Citrus Sinensis ID: 037302

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------41
Protein Sequence
MDNNGNAAELSQLNFTCFPNLESIIIPYTLLSGRIPSEIGALSKLEELALPYNSLTGTIPAEIGSLRNLVELDLSNNILNGSIPLEFGNLKDLDALRLRGNKLDGLIPSSIGNLTNLTHLDLSLNQLSGRLPQEVGNLKNLLSLFLDNNNLTGPIPSTLYHLNQLSNLYLAYNNLVGPLPKEVGNMKNLDSLLLNRNSLTGPIPSTIGYLNLGGKLDLSHNRLDSPIPPTIGNLTNLTSLDLSSNQLSGLLPREVGNLKYLDSLSLDGNNLIGSIPPTIGYLTNLTSLNLGYNQLSSSIPPELMNCSQLQNLVLSHNTLSGIVPPEIGNLTHLRQLDLSHNFINGTIPSQLGYIPNISAVDLSKNNLSGVVPASVRIIPKLIVSENNLELENSTSSENAPPPQAKPFK
Secondary Structure (PSIPRED)
ccccccEEEcccccccccccccEEEccccccEEEccHHHcccccccEEEccccccEEcccHHHcccccccEEEcccccEEEcccccccccccccEEEcccccccccccHHHHccccccEEcccccEEEEcccHHHHccccccEEEccccEEcccccHHcccccccccEEcccccccccccccccccccccEEEccccEEEEcccHHccccccccEEEcccccccccccccccccccccEEEccccccEEcccccccccccccEEEccccEEEccccccccccccccEEEcccccccccccHHccccccccEEEcccccccccccHHHHccccccEEEcccccccccccHHHcccccccEEEccccccccccccccccccccccccccEEEcccccccccccccccccc
Secondary Structure Prediction (SSPRO)
cccccccccccHHHHcccccccEEEEEEEcEEccccHHHHHcccccEEEEEEEccEEEccHHHHHcccccEEEccccEEEccccHHHHHcccccEEEccccccEEEccHHHHccccccEEEcccccccccccccccccccccEEEcccccEEccccHHHHHcccccEEEEEEEccEEEccHHHHHcccccEEEccccEEEccccHHHHHcccccEEEccccccEEEccHHHHccccccEEEccccEEEccccHHHHHcccccEEEccccccEEEccHHHHccccccEEEEEEEccEEEccHHHHHcccccEEEccccEEEccccHHHHHcccccEEEccccccEEEccHHHHHcccccEEEccccEEEccccHHHHHcccccccccccccccccHcccccHHHHcccc
Coil and Loop (DISEMBL)
mdnngnaaelsqlnftcfpnlesiiipytllsgripseigALSKLEElalpynsltgtipaeiGSLRNLVEldlsnnilngsiplefgnlkdldALRLRgnkldglipssignltnlthLDLSLnqlsgrlpqevGNLKNLLSLFldnnnltgpipstlyHLNQLSNLYLAYNnlvgplpkevgnmknlDSLLlnrnsltgpipstigylnlggkldlshnrldspipptignltnltsldlssnqlsgllprevgnlkyldslsldgnnligsipptigyltnltslnlgynqlsssippelmncsqLQNLVLshntlsgivppeignlthlrqldlshnfingtipsqlgyipnisavdlsknnlsgvvpasvriiPKLIvsennlelenstssenapppqakpfk
Flexible Loop (DISEMBL)
MDNNGNAAELSQLNFTCFPNLESIIIPYTLLSGRIPSEIGALSKLEELALPYNSLTGTIPAEIGSLRNLVELDLSNNILNGSIPLEFGNLKDLDALRLRGNKLDGLIPSSIGNLTNLTHLDLSLNQLSGRLPQEVGNLKNLLSLFLDNNNLTGPIPSTLYHLNQLSNLYLAYNNLVGPLPKEVGNMKNLDSLLLNRNSLTGPIPSTIGYLNLGGKLDLSHNRLDSPIPPTIGNLTNLTSLDLSSNQLSGLLPREVGNLKYLDSLSLDGNNLIGSIPPTIGYLTNLTSLNLGYNQLSSSIPPELMNCSQLQNLVLSHNTLSGIVPPEIGNLTHLRQLDLSHNFINGTIPSQLGYIPNISAVDLSKNNLSGVVPASVRIIPKLIVSENNLelenstssenapppqakpfk
Low Complexity Region (SEG)
MDNNGNAAELSQLNFTCFPNLESIIIPYTLLSGRIPSEIGALSKLEELALPYNSLTGTIPAEIGSLRNLVELDLSNNILNGSIPLEFGNLKDLDALRLRGNKLDGLIPSSIGNLTNLTHLDLSLNQLSGRLPQEVGnlknllslfldnnnlTGPIPSTLYHLNQLSNLYLAYNNLVGPLPKEVGNMKnldslllnrnslTGPIPSTIGYLNLGGKLDLSHNRLDSPIPPTIGnltnltsldlssnqlsGLLPREVGNLKYLDSLSLDGNNLIGSIPPTIGYLTNLTSLNLGYNQLSSSIPPELMNCSQLQNLVLSHNTLSGIVPPEIGNLTHLRQLDLSHNFINGTIPSQLGYIPNISAVDLSKNNLSGVVPASVRIIPKLIVSENNLELENSTSSENAPPPQAKPFK
Disordered region (IsUnstruct)
***********QLNFTCFPNLESIIIPYTLLSGRIPSEIGALSKLEELALPYNSLTGTIPAEIGSLRNLVELDLSNNILNGSIPLEFGNLKDLDALRLRGNKLDGLIPSSIGNLTNLTHLDLSLNQLSGRLPQEVGNLKNLLSLFLDNNNLTGPIPSTLYHLNQLSNLYLAYNNLVGPLPKEVGNMKNLDSLLLNRNSLTGPIPSTIGYLNLGGKLDLSHNRLDSPIPPTIGNLTNLTSLDLSSNQLSGLLPREVGNLKYLDSLSLDGNNLIGSIPPTIGYLTNLTSLNLGYNQLSSSIPPELMNCSQLQNLVLSHNTLSGIVPPEIGNLTHLRQLDLSHNFINGTIPSQLGYIPNISAVDLSKNNLSGVVPASVRIIPKLIVS************************
Disordered Region (DISOPRED)
MDNNGNAAELSQLNFTCFPNLESIIIPYTLLSGRIPSEIGALSKLEELALPYNSLTGTIPAEIGSLRNLVELDLSNNILNGSIPLEFGNLKDLDALRLRGNKLDGLIPSSIGNLTNLTHLDLSLNQLSGRLPQEVGNLKNLLSLFLDNNNLTGPIPSTLYHLNQLSNLYLAYNNLVGPLPKEVGNMKNLDSLLLNRNSLTGPIPSTIGYLNLGGKLDLSHNRLDSPIPPTIGNLTNLTSLDLSSNQLSGLLPREVGNLKYLDSLSLDGNNLIGSIPPTIGYLTNLTSLNLGYNQLSSSIPPELMNCSQLQNLVLSHNTLSGIVPPEIGNLTHLRQLDLSHNFINGTIPSQLGYIPNISAVDLSKNNLSGVVPASVRIIPKLIVSENNLELENSTSSENAPPPQAKPFK
Disordered Region (DISEMBL)
********ELSQLNFTCFPNLESIIIPYTLLSGRIPSEIGALSKLEELALPYNSLTGTIPAEIGSLRNLVELDLSNNILNGSIPLEFGNLKDLDALRLRGNKLDGLIPSSIGNLTNLTHLDLSLNQLSGRLPQEVGNLKNLLSLFLDNNNLTGPIPSTLYHLNQLSNLYLAYNNLVGPLPKEVGNMKNLDSLLLNRNSLTGPIPSTIGYLNLGGKLDLSHNRLDSPIPPTIGNLTNLTSLDLSSNQLSGLLPREVGNLKYLDSLSLDGNNLIGSIPPTIGYLTNLTSLNLGYNQLSSSIPPELMNCSQLQNLVLSHNTLSGIVPPEIGNLTHLRQLDLSHNFINGTIPSQLGYIPNISAVDLSKNNLSGVVPASVRIIPKLIVSENNLE*******************
Disordered Region (DISPRO)
**NNGNAAELSQLNFTCFPNLESIIIPYTLLSGRIPSEIGALSKLEELALPYNSLTGTIPAEIGSLRNLVELDLSNNILNGSIPLEFGNLKDLDALRLRGNKLDGLIPSSIGNLTNLTHLDLSLNQLSGRLPQEVGNLKNLLSLFLDNNNLTGPIPSTLYHLNQLSNLYLAYNNLVGPLPKEVGNMKNLDSLLLNRNSLTGPIPSTIGYLNLGGKLDLSHNRLDSPIPPTIGNLTNLTSLDLSSNQLSGLLPREVGNLKYLDSLSLDGNNLIGSIPPTIGYLTNLTSLNLGYNQLSSSIPPELMNCSQLQNLVLSHNTLSGIVPPEIGNLTHLRQLDLSHNFINGTIPSQLGYIPNISAVDLSKNNLSGVVPASVRIIPKLIVSENNLELENSTSSENAPPPQAKPFK
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
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TM Helix, Signal Peptide (MEMSAT_SVM)
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TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MDNNGNAAELSQLNFTCFPNLESIIIPYTLLSGRIPSEIGALSKLEELALPYNSLTGTIPAEIGSLRNLVELDLSNNILNGSIPLEFGNLKDLDALRLRGNKLDGLIPSSIGNLTNLTHLDLSLNQLSGRLPQEVGNLKNLLSLFLDNNNLTGPIPSTLYHLNQLSNLYLAYNNLVGPLPKEVGNMKNLDSLLLNRNSLTGPIPSTIGYLNLGGKLDLSHNRLDSPIPPTIGNLTNLTSLDLSSNQLSGLLPREVGNLKYLDSLSLDGNNLIGSIPPTIGYLTNLTSLNLGYNQLSSSIPPELMNCSQLQNLVLSHNTLSGIVPPEIGNLTHLRQLDLSHNFINGTIPSQLGYIPNISAVDLSKNNLSGVVPASVRIIPKLIVSENNLELENSTSSENAPPPQAKPFK
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	408	2.2.26 [Sep-21-2011]
C0LGR3	1091	Probable LRR receptor-lik	yes	no	0.877	0.328	0.404	3e-63
C0LGV1	1135	LRR receptor-like serine/	no	no	0.919	0.330	0.393	1e-62
C0LGQ5	1249	LRR receptor-like serine/	no	no	0.904	0.295	0.414	1e-62
Q8VZG8	1045	Probable LRR receptor-lik	no	no	0.867	0.338	0.399	1e-62
Q9FIZ3	1252	LRR receptor-like serine/	no	no	0.887	0.289	0.396	2e-61
Q9LHP4	1141	Receptor-like protein kin	no	no	0.872	0.312	0.406	2e-61
Q9LP24	1120	Probable leucine-rich rep	no	no	0.845	0.308	0.418	4e-61
Q9FL28	1173	LRR receptor-like serine/	no	no	0.894	0.311	0.390	7e-61
Q9LVP0	1102	Probable leucine-rich rep	no	no	0.904	0.334	0.397	1e-58
Q9SHI2	1101	Leucine-rich repeat recep	no	no	0.892	0.330	0.403	8e-58

>sp|C0LGR3|Y4265_ARATH Probable LRR receptor-like serine/threonine-protein kinase At4g26540 OS=Arabidopsis thaliana GN=At4g26540 PE=1 SV=1

 Score =  242 bits (618), Expect = 3e-63,   Method: Compositional matrix adjust.
 Identities = 155/383 (40%), Positives = 219/383 (57%), Gaps = 25/383 (6%)

Query: 18  FPNLESIIIPYTLLSGRIPSEIGALSKLEELALPYNSLTGTIPAEIGSLRNLVELDLSNN 77
           F  LE + +    LSG IP EI  L KL+ L+L  N+L G IP EIG+L  LVEL L +N
Sbjct: 116 FTELELLDLSDNSLSGDIPVEIFRLKKLKTLSLNTNNLEGHIPMEIGNLSGLVELMLFDN 175

Query: 78  ILNGSIPLEFGNLKDLDALRLRGNK-LDGLIPSSIGNLTNLTHLDLSLNQLSGRLPQEVG 136
            L+G IP   G LK+L  LR  GNK L G +P  IGN  NL  L L+   LSG+LP  +G
Sbjct: 176 KLSGEIPRSIGELKNLQVLRAGGNKNLRGELPWEIGNCENLVMLGLAETSLSGKLPASIG 235

Query: 137 NLKNLLSLFLDNNNLTGPIPSTLYHLNQLSNLYLAYNNLVGPLPKEVGNMKNLDSLLLNR 196
           NLK + ++ +  + L+GPIP  + +  +L NLYL  N++ G +P  +G +K L SLLL +
Sbjct: 236 NLKRVQTIAIYTSLLSGPIPDEIGYCTELQNLYLYQNSISGSIPTTIGGLKKLQSLLLWQ 295

Query: 197 NSLTGPIPSTIGYLNLGGKLDLSHNRLDSPIPPTIGNLTNLTSLDLSSNQLSGLLPREVG 256
           N+L G IP+ +G       +D S N L   IP + G L NL  L LS NQ+SG +P E+ 
Sbjct: 296 NNLVGKIPTELGNCPELWLIDFSENLLTGTIPRSFGKLENLQELQLSVNQISGTIPEELT 355

Query: 257 NLKYLDSLSLDGNNLIGSIPPTIGYLTNLTSLNLGYNQLSSSIPPELMNCSQLQNLVLSH 316
           N   L  L +D N + G IP  +  L +LT      N+L+ +IP  L  C +LQ + LS+
Sbjct: 356 NCTKLTHLEIDNNLITGEIPSLMSNLRSLTMFFAWQNKLTGNIPQSLSQCRELQAIDLSY 415

Query: 317 NTLSG------------------------IVPPEIGNLTHLRQLDLSHNFINGTIPSQLG 352
           N+LSG                         +PP+IGN T+L +L L+ N + G+IPS++G
Sbjct: 416 NSLSGSIPKEIFGLRNLTKLLLLSNDLSGFIPPDIGNCTNLYRLRLNGNRLAGSIPSEIG 475

Query: 353 YIPNISAVDLSKNNLSGVVPASV 375
            + N++ VD+S+N L G +P ++
Sbjct: 476 NLKNLNFVDISENRLVGSIPPAI 498

Arabidopsis thaliana (taxid: 3702)
EC: 2EC: .EC: 7EC: .EC: 1EC: 1EC: .EC: 1

>sp|C0LGV1|RCH1_ARATH LRR receptor-like serine/threonine-protein kinase RCH1 OS=Arabidopsis thaliana GN=RCH1 PE=2 SV=1

 Score =  240 bits (613), Expect = 1e-62,   Method: Compositional matrix adjust.
 Identities = 169/429 (39%), Positives = 237/429 (55%), Gaps = 54/429 (12%)

Query: 14  NFTCFPNLESIIIPYTLLSGRIPSEIGALSKLEELALPYNSLTGTIPAEIGSLRNLVELD 73
           N + F +L+ ++I  T L+G I SEIG  S+L  + L  NSL G IP+ +G L+NL EL 
Sbjct: 101 NISSFTSLQKLVISNTNLTGAISSEIGDCSELIVIDLSSNSLVGEIPSSLGKLKNLQELC 160

Query: 74  LSNNILNGSI------------------------PLEFGNLKDLDALRLRGN-KLDGLIP 108
           L++N L G I                        PLE G +  L+++R  GN +L G IP
Sbjct: 161 LNSNGLTGKIPPELGDCVSLKNLEIFDNYLSENLPLELGKISTLESIRAGGNSELSGKIP 220

Query: 109 SSIGNLTNLTHLDLSLNQLSGRLPQEVGNLKNLLSLFLDNNNLTGPIPSTLYHLNQLSNL 168
             IGN  NL  L L+  ++SG LP  +G L  L SL + +  L+G IP  L + ++L NL
Sbjct: 221 EEIGNCRNLKVLGLAATKISGSLPVSLGQLSKLQSLSVYSTMLSGEIPKELGNCSELINL 280

Query: 169 YLAYNNLVGPLPKEVGNMKNLDSLLLNRNSLTGPIPSTIGYLNLGGKLDLSHNRLDSPIP 228
           +L  N+L G LPKE+G ++NL+ +LL +N+L GPIP  IG++     +DLS N     IP
Sbjct: 281 FLYDNDLSGTLPKELGKLQNLEKMLLWQNNLHGPIPEEIGFMKSLNAIDLSMNYFSGTIP 340

Query: 229 PTIGNLTNLTSLDLSSNQLSGLLPREVGNLKYLDSLSLDGNNLIGSIPPTIGYLTNLTSL 288
            + GNL+NL  L LSSN ++G +P  + N   L    +D N + G IPP IG L  L ++
Sbjct: 341 KSFGNLSNLQELMLSSNNITGSIPSILSNCTKLVQFQIDANQISGLIPPEIGLLKEL-NI 399

Query: 289 NLGY-NQLSSSIPPELMNCSQLQNLVLSHNTL------------------------SGIV 323
            LG+ N+L  +IP EL  C  LQ L LS N L                        SG++
Sbjct: 400 FLGWQNKLEGNIPDELAGCQNLQALDLSQNYLTGSLPAGLFQLRNLTKLLLISNAISGVI 459

Query: 324 PPEIGNLTHLRQLDLSHNFINGTIPSQLGYIPNISAVDLSKNNLSGVVP---ASVRIIPK 380
           P EIGN T L +L L +N I G IP  +G++ N+S +DLS+NNLSG VP   ++ R +  
Sbjct: 460 PLEIGNCTSLVRLRLVNNRITGEIPKGIGFLQNLSFLDLSENNLSGPVPLEISNCRQLQM 519

Query: 381 LIVSENNLE 389
           L +S N L+
Sbjct: 520 LNLSNNTLQ 528

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|C0LGQ5|GSO1_ARATH LRR receptor-like serine/threonine-protein kinase GSO1 OS=Arabidopsis thaliana GN=GSO1 PE=2 SV=1

 Score =  240 bits (613), Expect = 1e-62,   Method: Compositional matrix adjust.
 Identities = 174/420 (41%), Positives = 228/420 (54%), Gaps = 51/420 (12%)

Query: 20  NLESIIIPYTLLSGRIPSEIGALSKLEELALPYNSLTGTIPAEIGSLRNLVELDLSNNIL 79
           NL+ +++ +  L G++P EI AL KLE L L  N  +G IP EIG+  +L  +D+  N  
Sbjct: 409 NLQWLVLYHNNLEGKLPKEISALRKLEVLFLYENRFSGEIPQEIGNCTSLKMIDMFGNHF 468

Query: 80  NGSIPLEFGNLKDLDALRLRGNKLDGLIPSSIGNLTNLTHLDLSLNQLSGRLPQEVGNLK 139
            G IP   G LK+L+ L LR N+L G +P+S+GN   L  LDL+ NQLSG +P   G LK
Sbjct: 469 EGEIPPSIGRLKELNLLHLRQNELVGGLPASLGNCHQLNILDLADNQLSGSIPSSFGFLK 528

Query: 140 NLLSLFLDNNNLTGPIPSTLYHLNQLSNLYLAYNNLVG---------------------- 177
            L  L L NN+L G +P +L  L  L+ + L++N L G                      
Sbjct: 529 GLEQLMLYNNSLQGNLPDSLISLRNLTRINLSHNRLNGTIHPLCGSSSYLSFDVTNNGFE 588

Query: 178 -PLPKEVGNMKNLDSLLLNRNSLTGPIPSTIGYLN---------------------LGGK 215
             +P E+GN +NLD L L +N LTG IP T+G +                      L  K
Sbjct: 589 DEIPLELGNSQNLDRLRLGKNQLTGKIPWTLGKIRELSLLDMSSNALTGTIPLQLVLCKK 648

Query: 216 L---DLSHNRLDSPIPPTIGNLTNLTSLDLSSNQLSGLLPREVGNLKYLDSLSLDGNNLI 272
           L   DL++N L  PIPP +G L+ L  L LSSNQ    LP E+ N   L  LSLDGN+L 
Sbjct: 649 LTHIDLNNNFLSGPIPPWLGKLSQLGELKLSSNQFVESLPTELFNCTKLLVLSLDGNSLN 708

Query: 273 GSIPPTIGYLTNLTSLNLGYNQLSSSIPPELMNCSQLQNLVLSHNTLSGIVPPEIGNLTH 332
           GSIP  IG L  L  LNL  NQ S S+P  +   S+L  L LS N+L+G +P EIG L  
Sbjct: 709 GSIPQEIGNLGALNVLNLDKNQFSGSLPQAMGKLSKLYELRLSRNSLTGEIPVEIGQLQD 768

Query: 333 LR-QLDLSHNFINGTIPSQLGYIPNISAVDLSKNNLSGVVPASV---RIIPKLIVSENNL 388
           L+  LDLS+N   G IPS +G +  +  +DLS N L+G VP SV   + +  L VS NNL
Sbjct: 769 LQSALDLSYNNFTGDIPSTIGTLSKLETLDLSHNQLTGEVPGSVGDMKSLGYLNVSFNNL 828

Together with GSO2, receptor-like serine/threonine-kinase required during the development of the epidermal surface in embryos and cotyledons.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q8VZG8|Y4885_ARATH Probable LRR receptor-like serine/threonine-protein kinase At4g08850 OS=Arabidopsis thaliana GN=At4g08850 PE=1 SV=3

 Score =  240 bits (613), Expect = 1e-62,   Method: Compositional matrix adjust.
 Identities = 153/383 (39%), Positives = 204/383 (53%)

Query: 1   MDNNGNAAELSQLNFTCFPNLESIIIPYTLLSGRIPSEIGALSKLEELALPYNSLTGTIP 60
           + N G         F+  PNL  + +     SG I    G  SKLE   L  N L G IP
Sbjct: 100 LTNTGIEGTFEDFPFSSLPNLTFVDLSMNRFSGTISPLWGRFSKLEYFDLSINQLVGEIP 159

Query: 61  AEIGSLRNLVELDLSNNILNGSIPLEFGNLKDLDALRLRGNKLDGLIPSSIGNLTNLTHL 120
            E+G L NL  L L  N LNGSIP E G L  +  + +  N L G IPSS GNLT L +L
Sbjct: 160 PELGDLSNLDTLHLVENKLNGSIPSEIGRLTKVTEIAIYDNLLTGPIPSSFGNLTKLVNL 219

Query: 121 DLSLNQLSGRLPQEVGNLKNLLSLFLDNNNLTGPIPSTLYHLNQLSNLYLAYNNLVGPLP 180
            L +N LSG +P E+GNL NL  L LD NNLTG IPS+  +L  ++ L +  N L G +P
Sbjct: 220 YLFINSLSGSIPSEIGNLPNLRELCLDRNNLTGKIPSSFGNLKNVTLLNMFENQLSGEIP 279

Query: 181 KEVGNMKNLDSLLLNRNSLTGPIPSTIGYLNLGGKLDLSHNRLDSPIPPTIGNLTNLTSL 240
            E+GNM  LD+L L+ N LTGPIPST+G +     L L  N+L+  IPP +G + ++  L
Sbjct: 280 PEIGNMTALDTLSLHTNKLTGPIPSTLGNIKTLAVLHLYLNQLNGSIPPELGEMESMIDL 339

Query: 241 DLSSNQLSGLLPREVGNLKYLDSLSLDGNNLIGSIPPTIGYLTNLTSLNLGYNQLSSSIP 300
           ++S N+L+G +P   G L  L+ L L  N L G IPP I   T LT L L  N  +  +P
Sbjct: 340 EISENKLTGPVPDSFGKLTALEWLFLRDNQLSGPIPPGIANSTELTVLQLDTNNFTGFLP 399

Query: 301 PELMNCSQLQNLVLSHNTLSGIVPPEIGNLTHLRQLDLSHNFINGTIPSQLGYIPNISAV 360
             +    +L+NL L  N   G VP  + +   L ++    N  +G I    G  P ++ +
Sbjct: 400 DTICRGGKLENLTLDDNHFEGPVPKSLRDCKSLIRVRFKGNSFSGDISEAFGVYPTLNFI 459

Query: 361 DLSKNNLSGVVPASVRIIPKLIV 383
           DLS NN  G + A+     KL+ 
Sbjct: 460 DLSNNNFHGQLSANWEQSQKLVA 482

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9FIZ3|GSO2_ARATH LRR receptor-like serine/threonine-protein kinase GSO2 OS=Arabidopsis thaliana GN=GSO2 PE=2 SV=2

 Score =  236 bits (603), Expect = 2e-61,   Method: Compositional matrix adjust.
 Identities = 153/386 (39%), Positives = 215/386 (55%), Gaps = 24/386 (6%)

Query: 20  NLESIIIPYTLLSGRIPSEIGALSKLEELALPYNSLTGTIPAEIGSLRNLVELDLSNNIL 79
           NL+   + +  L G++P EIG L KLE + L  N  +G +P EIG+   L E+D   N L
Sbjct: 410 NLQEFTLYHNNLEGKVPKEIGFLGKLEIMYLYENRFSGEMPVEIGNCTRLQEIDWYGNRL 469

Query: 80  NGSIPLEFGNLKDLDALRLRGNKLDGLIPSSIGNLTNLTHLDLSLNQLSGRLPQEVGNLK 139
           +G IP   G LKDL  L LR N+L G IP+S+GN   +T +DL+ NQLSG +P   G L 
Sbjct: 470 SGEIPSSIGRLKDLTRLHLRENELVGNIPASLGNCHQMTVIDLADNQLSGSIPSSFGFLT 529

Query: 140 NLLSLFLDNNNLTGPIPSTLYHLNQLSNL-------------------YLAY----NNLV 176
            L    + NN+L G +P +L +L  L+ +                   YL++    N   
Sbjct: 530 ALELFMIYNNSLQGNLPDSLINLKNLTRINFSSNKFNGSISPLCGSSSYLSFDVTENGFE 589

Query: 177 GPLPKEVGNMKNLDSLLLNRNSLTGPIPSTIGYLNLGGKLDLSHNRLDSPIPPTIGNLTN 236
           G +P E+G   NLD L L +N  TG IP T G ++    LD+S N L   IP  +G    
Sbjct: 590 GDIPLELGKSTNLDRLRLGKNQFTGRIPRTFGKISELSLLDISRNSLSGIIPVELGLCKK 649

Query: 237 LTSLDLSSNQLSGLLPREVGNLKYLDSLSLDGNNLIGSIPPTIGYLTNLTSLNLGYNQLS 296
           LT +DL++N LSG++P  +G L  L  L L  N  +GS+P  I  LTN+ +L L  N L+
Sbjct: 650 LTHIDLNNNYLSGVIPTWLGKLPLLGELKLSSNKFVGSLPTEIFSLTNILTLFLDGNSLN 709

Query: 297 SSIPPELMNCSQLQNLVLSHNTLSGIVPPEIGNLTHLRQLDLSHNFINGTIPSQLGYIPN 356
            SIP E+ N   L  L L  N LSG +P  IG L+ L +L LS N + G IP ++G + +
Sbjct: 710 GSIPQEIGNLQALNALNLEENQLSGPLPSTIGKLSKLFELRLSRNALTGEIPVEIGQLQD 769

Query: 357 I-SAVDLSKNNLSGVVPASVRIIPKL 381
           + SA+DLS NN +G +P+++  +PKL
Sbjct: 770 LQSALDLSYNNFTGRIPSTISTLPKL 795

Together with GSO1, receptor-like serine/threonine-kinase required during the development of the epidermal surface in embryos and cotyledons. Involved in the nuclear division phase of megagametogenesis.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9LHP4|RCH2_ARATH Receptor-like protein kinase 2 OS=Arabidopsis thaliana GN=RCH2 PE=1 SV=1

 Score =  236 bits (603), Expect = 2e-61,   Method: Compositional matrix adjust.
 Identities = 145/357 (40%), Positives = 207/357 (57%), Gaps = 1/357 (0%)

Query: 20  NLESIIIPYTLLSGRIPSEIGALSKLEELALPYNSLTGTIPAEIGSLRNLVELDLSNNI- 78
           NLE++I+    L+G+IP +I   SKL+ L L  N LTG+IP E+G L  L  + +  N  
Sbjct: 154 NLETLILNSNQLTGKIPPDISKCSKLKSLILFDNLLTGSIPTELGKLSGLEVIRIGGNKE 213

Query: 79  LNGSIPLEFGNLKDLDALRLRGNKLDGLIPSSIGNLTNLTHLDLSLNQLSGRLPQEVGNL 138
           ++G IP E G+  +L  L L    + G +PSS+G L  L  L +    +SG +P ++GN 
Sbjct: 214 ISGQIPSEIGDCSNLTVLGLAETSVSGNLPSSLGKLKKLETLSIYTTMISGEIPSDLGNC 273

Query: 139 KNLLSLFLDNNNLTGPIPSTLYHLNQLSNLYLAYNNLVGPLPKEVGNMKNLDSLLLNRNS 198
             L+ LFL  N+L+G IP  +  L +L  L+L  N+LVG +P+E+GN  NL  + L+ N 
Sbjct: 274 SELVDLFLYENSLSGSIPREIGQLTKLEQLFLWQNSLVGGIPEEIGNCSNLKMIDLSLNL 333

Query: 199 LTGPIPSTIGYLNLGGKLDLSHNRLDSPIPPTIGNLTNLTSLDLSSNQLSGLLPREVGNL 258
           L+G IPS+IG L+   +  +S N+    IP TI N ++L  L L  NQ+SGL+P E+G L
Sbjct: 334 LSGSIPSSIGRLSFLEEFMISDNKFSGSIPTTISNCSSLVQLQLDKNQISGLIPSELGTL 393

Query: 259 KYLDSLSLDGNNLIGSIPPTIGYLTNLTSLNLGYNQLSSSIPPELMNCSQLQNLVLSHNT 318
             L       N L GSIPP +   T+L +L+L  N L+ +IP  L     L  L+L  N+
Sbjct: 394 TKLTLFFAWSNQLEGSIPPGLADCTDLQALDLSRNSLTGTIPSGLFMLRNLTKLLLISNS 453

Query: 319 LSGIVPPEIGNLTHLRQLDLSHNFINGTIPSQLGYIPNISAVDLSKNNLSGVVPASV 375
           LSG +P EIGN + L +L L  N I G IPS +G +  I+ +D S N L G VP  +
Sbjct: 454 LSGFIPQEIGNCSSLVRLRLGFNRITGEIPSGIGSLKKINFLDFSSNRLHGKVPDEI 510

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9LP24|Y1571_ARATH Probable leucine-rich repeat receptor-like protein kinase At1g35710 OS=Arabidopsis thaliana GN=At1g35710 PE=2 SV=1

 Score =  235 bits (600), Expect = 4e-61,   Method: Compositional matrix adjust.
 Identities = 157/375 (41%), Positives = 216/375 (57%)

Query: 1   MDNNGNAAELSQLNFTCFPNLESIIIPYTLLSGRIPSEIGALSKLEELALPYNSLTGTIP 60
           + N G         F    NL  + +   LLSG IP + G LSKL    L  N LTG I 
Sbjct: 84  LTNTGIEGTFQDFPFISLSNLAYVDLSMNLLSGTIPPQFGNLSKLIYFDLSTNHLTGEIS 143

Query: 61  AEIGSLRNLVELDLSNNILNGSIPLEFGNLKDLDALRLRGNKLDGLIPSSIGNLTNLTHL 120
             +G+L+NL  L L  N L   IP E GN++ +  L L  NKL G IPSS+GNL NL  L
Sbjct: 144 PSLGNLKNLTVLYLHQNYLTSVIPSELGNMESMTDLALSQNKLTGSIPSSLGNLKNLMVL 203

Query: 121 DLSLNQLSGRLPQEVGNLKNLLSLFLDNNNLTGPIPSTLYHLNQLSNLYLAYNNLVGPLP 180
            L  N L+G +P E+GN++++  L L  N LTG IPSTL +L  L  LYL  N L G +P
Sbjct: 204 YLYENYLTGVIPPELGNMESMTDLALSQNKLTGSIPSTLGNLKNLMVLYLYENYLTGVIP 263

Query: 181 KEVGNMKNLDSLLLNRNSLTGPIPSTIGYLNLGGKLDLSHNRLDSPIPPTIGNLTNLTSL 240
            E+GNM+++ +L L++N LTG IPS++G L     L L  N L   IPP +GN+ ++  L
Sbjct: 264 PEIGNMESMTNLALSQNKLTGSIPSSLGNLKNLTLLSLFQNYLTGGIPPKLGNIESMIDL 323

Query: 241 DLSSNQLSGLLPREVGNLKYLDSLSLDGNNLIGSIPPTIGYLTNLTSLNLGYNQLSSSIP 300
           +LS+N+L+G +P  +GNLK L  L L  N L G IPP +G + ++  L L  N+L+ SIP
Sbjct: 324 ELSNNKLTGSIPSSLGNLKNLTILYLYENYLTGVIPPELGNMESMIDLQLNNNKLTGSIP 383

Query: 301 PELMNCSQLQNLVLSHNTLSGIVPPEIGNLTHLRQLDLSHNFINGTIPSQLGYIPNISAV 360
               N   L  L L  N L+G++P E+GN+  +  LDLS N + G++P   G    + ++
Sbjct: 384 SSFGNLKNLTYLYLYLNYLTGVIPQELGNMESMINLDLSQNKLTGSVPDSFGNFTKLESL 443

Query: 361 DLSKNNLSGVVPASV 375
            L  N+LSG +P  V
Sbjct: 444 YLRVNHLSGAIPPGV 458

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9FL28|FLS2_ARATH LRR receptor-like serine/threonine-protein kinase FLS2 OS=Arabidopsis thaliana GN=FLS2 PE=1 SV=1

 Score =  234 bits (598), Expect = 7e-61,   Method: Compositional matrix adjust.
 Identities = 144/369 (39%), Positives = 221/369 (59%), Gaps = 4/369 (1%)

Query: 24  IIIPYTLLSGRIPSEIGALSKLEELALPYNSLTGTIPAEIGSLRNLVELDLSNNILNGSI 83
           I   Y  L+G+IP  +G L  L+      N LTG+IP  IG+L NL +LDLS N L G I
Sbjct: 173 IGFDYNNLTGKIPECLGDLVHLQMFVAAGNHLTGSIPVSIGTLANLTDLDLSGNQLTGKI 232

Query: 84  PLEFGNLKDLDALRLRGNKLDGLIPSSIGNLTNLTHLDLSLNQLSGRLPQEVGNLKNLLS 143
           P +FGNL +L +L L  N L+G IP+ IGN ++L  L+L  NQL+G++P E+GNL  L +
Sbjct: 233 PRDFGNLLNLQSLVLTENLLEGDIPAEIGNCSSLVQLELYDNQLTGKIPAELGNLVQLQA 292

Query: 144 LFLDNNNLTGPIPSTLYHLNQLSNLYLAYNNLVGPLPKEVGNMKNLDSLLLNRNSLTGPI 203
           L +  N LT  IPS+L+ L QL++L L+ N+LVGP+ +E+G +++L+ L L+ N+ TG  
Sbjct: 293 LRIYKNKLTSSIPSSLFRLTQLTHLGLSENHLVGPISEEIGFLESLEVLTLHSNNFTGEF 352

Query: 204 PSTIGYLNLGGKLDLSHNRLDSPIPPTIGNLTNLTSLDLSSNQLSGLLPREVGNLKYLDS 263
           P +I  L     L +  N +   +P  +G LTNL +L    N L+G +P  + N   L  
Sbjct: 353 PQSITNLRNLTVLTVGFNNISGELPADLGLLTNLRNLSAHDNLLTGPIPSSISNCTGLKL 412

Query: 264 LSLDGNNLIGSIPPTIGYLTNLTSLNLGYNQLSSSIPPELMNCSQLQNLVLSHNTLSGIV 323
           L L  N + G IP   G + NLT +++G N  +  IP ++ NCS L+ L ++ N L+G +
Sbjct: 413 LDLSHNQMTGEIPRGFGRM-NLTFISIGRNHFTGEIPDDIFNCSNLETLSVADNNLTGTL 471

Query: 324 PPEIGNLTHLRQLDLSHNFINGTIPSQLGYIPNISAVDLSKNNLSGVVP---ASVRIIPK 380
            P IG L  LR L +S+N + G IP ++G + +++ + L  N  +G +P   +++ ++  
Sbjct: 472 KPLIGKLQKLRILQVSYNSLTGPIPREIGNLKDLNILYLHSNGFTGRIPREMSNLTLLQG 531

Query: 381 LIVSENNLE 389
           L +  N+LE
Sbjct: 532 LRMYSNDLE 540

Constitutes the pattern-recognition receptor (PPR) that determines the specific perception of flagellin (flg22), a potent elicitor of the defense response to pathogen-associated molecular patterns (PAMPs). Flagellin-binding to the receptor is the first step to initiate the innate immune MAP kinase signaling cascade (MEKK1, MKK4/MKK5 and MPK3/MPK6), resulting in enhanced resistance against pathogens. Binding to the effector AvrPto1 from Pseudomonas syringae blocks the downstream plant immune response.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9LVP0|Y5639_ARATH Probable leucine-rich repeat receptor-like protein kinase At5g63930 OS=Arabidopsis thaliana GN=At5g63930 PE=1 SV=1

 Score =  227 bits (579), Expect = 1e-58,   Method: Compositional matrix adjust.
 Identities = 148/372 (39%), Positives = 211/372 (56%), Gaps = 3/372 (0%)

Query: 20  NLESIIIPYTLLSGRIPSEIGALSKLEELALPYNSLTGTIPAEIGSLRNLVELDLSNNIL 79
           +L+ + + Y  LSG+IP EIG  S LE L L  N   G IP EIG L +L  L + NN +
Sbjct: 98  HLKQLDLSYNGLSGKIPKEIGNCSSLEILKLNNNQFDGEIPVEIGKLVSLENLIIYNNRI 157

Query: 80  NGSIPLEFGNLKDLDALRLRGNKLDGLIPSSIGNLTNLTHLDLSLNQLSGRLPQEVGNLK 139
           +GS+P+E GNL  L  L    N + G +P SIGNL  LT      N +SG LP E+G  +
Sbjct: 158 SGSLPVEIGNLLSLSQLVTYSNNISGQLPRSIGNLKRLTSFRAGQNMISGSLPSEIGGCE 217

Query: 140 NLLSLFLDNNNLTGPIPSTLYHLNQLSNLYLAYNNLVGPLPKEVGNMKNLDSLLLNRNSL 199
           +L+ L L  N L+G +P  +  L +LS + L  N   G +P+E+ N  +L++L L +N L
Sbjct: 218 SLVMLGLAQNQLSGELPKEIGMLKKLSQVILWENEFSGFIPREISNCTSLETLALYKNQL 277

Query: 200 TGPIPSTIGYLNLGGKLDLSHNRLDSPIPPTIGNLTNLTSLDLSSNQLSGLLPREVGNLK 259
            GPIP  +G L     L L  N L+  IP  IGNL+    +D S N L+G +P E+GN++
Sbjct: 278 VGPIPKELGDLQSLEFLYLYRNGLNGTIPREIGNLSYAIEIDFSENALTGEIPLELGNIE 337

Query: 260 YLDSLSLDGNNLIGSIPPTIGYLTNLTSLNLGYNQLSSSIPPELMNCSQLQNLVLSHNTL 319
            L+ L L  N L G+IP  +  L NL+ L+L  N L+  IP        L  L L  N+L
Sbjct: 338 GLELLYLFENQLTGTIPVELSTLKNLSKLDLSINALTGPIPLGFQYLRGLFMLQLFQNSL 397

Query: 320 SGIVPPEIGNLTHLRQLDLSHNFINGTIPSQLGYIPNISAVDLSKNNLSGVVPASV---R 376
           SG +PP++G  + L  LD+S N ++G IPS L    N+  ++L  NNLSG +P  +   +
Sbjct: 398 SGTIPPKLGWYSDLWVLDMSDNHLSGRIPSYLCLHSNMIILNLGTNNLSGNIPTGITTCK 457

Query: 377 IIPKLIVSENNL 388
            + +L ++ NNL
Sbjct: 458 TLVQLRLARNNL 469

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9SHI2|Y1723_ARATH Leucine-rich repeat receptor-like serine/threonine-protein kinase At1g17230 OS=Arabidopsis thaliana GN=At1g17230 PE=2 SV=2

 Score =  224 bits (571), Expect = 8e-58,   Method: Compositional matrix adjust.
 Identities = 148/367 (40%), Positives = 202/367 (55%)

Query: 20  NLESIIIPYTLLSGRIPSEIGALSKLEELALPYNSLTGTIPAEIGSLRNLVELDLSNNIL 79
            LE + +     +G IP EIG L+K++ L L  N LTG IP EIG+L +  E+D S N L
Sbjct: 260 RLEVLALHENYFTGSIPREIGKLTKMKRLYLYTNQLTGEIPREIGNLIDAAEIDFSENQL 319

Query: 80  NGSIPLEFGNLKDLDALRLRGNKLDGLIPSSIGNLTNLTHLDLSLNQLSGRLPQEVGNLK 139
            G IP EFG++ +L  L L  N L G IP  +G LT L  LDLS+N+L+G +PQE+  L 
Sbjct: 320 TGFIPKEFGHILNLKLLHLFENILLGPIPRELGELTLLEKLDLSINRLNGTIPQELQFLP 379

Query: 140 NLLSLFLDNNNLTGPIPSTLYHLNQLSNLYLAYNNLVGPLPKEVGNMKNLDSLLLNRNSL 199
            L+ L L +N L G IP  +   +  S L ++ N+L GP+P      + L  L L  N L
Sbjct: 380 YLVDLQLFDNQLEGKIPPLIGFYSNFSVLDMSANSLSGPIPAHFCRFQTLILLSLGSNKL 439

Query: 200 TGPIPSTIGYLNLGGKLDLSHNRLDSPIPPTIGNLTNLTSLDLSSNQLSGLLPREVGNLK 259
           +G IP  +       KL L  N+L   +P  + NL NLT+L+L  N LSG +  ++G LK
Sbjct: 440 SGNIPRDLKTCKSLTKLMLGDNQLTGSLPIELFNLQNLTALELHQNWLSGNISADLGKLK 499

Query: 260 YLDSLSLDGNNLIGSIPPTIGYLTNLTSLNLGYNQLSSSIPPELMNCSQLQNLVLSHNTL 319
            L+ L L  NN  G IPP IG LT +   N+  NQL+  IP EL +C  +Q L LS N  
Sbjct: 500 NLERLRLANNNFTGEIPPEIGNLTKIVGFNISSNQLTGHIPKELGSCVTIQRLDLSGNKF 559

Query: 320 SGIVPPEIGNLTHLRQLDLSHNFINGTIPSQLGYIPNISAVDLSKNNLSGVVPASVRIIP 379
           SG +  E+G L +L  L LS N + G IP   G +  +  + L  N LS  +P  +  + 
Sbjct: 560 SGYIAQELGQLVYLEILRLSDNRLTGEIPHSFGDLTRLMELQLGGNLLSENIPVELGKLT 619

Query: 380 KLIVSEN 386
            L +S N
Sbjct: 620 SLQISLN 626

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	408
357451683	1029	Receptor protein kinase-like protein [Me	0.767	0.304	0.455	2e-72
358346993	801	Receptor protein kinase-like protein [Me	0.879	0.448	0.494	2e-71
299470286	1527	LRR-GTPase of the ROCO family [Ectocarpu	0.901	0.240	0.452	1e-69
153870007	1308	conserved hypothetical protein [Beggiato	0.776	0.242	0.534	2e-69
302795083	1243	hypothetical protein SELMODRAFT_418921 [	0.879	0.288	0.435	3e-69
225465647	820	PREDICTED: probable LRR receptor-like se	0.914	0.454	0.438	4e-69
356577797	1204	PREDICTED: probable LRR receptor-like se	0.860	0.291	0.437	2e-68
297846638	1123	hypothetical protein ARALYDRAFT_473694 [	0.904	0.328	0.44	2e-68
225452751	878	PREDICTED: probable leucine-rich repeat	0.919	0.427	0.443	2e-68
12054894	1145	receptor protein kinase [Pinus sylvestri	0.811	0.289	0.443	2e-68

>gi|357451683|ref|XP_003596118.1| Receptor protein kinase-like protein [Medicago truncatula] gi|355485166|gb|AES66369.1| Receptor protein kinase-like protein [Medicago truncatula]

 Score =  279 bits (713), Expect = 2e-72,   Method: Compositional matrix adjust.
 Identities = 170/373 (45%), Positives = 237/373 (63%)

Query: 10  LSQLNFTCFPNLESIIIPYTLLSGRIPSEIGALSKLEELALPYNSLTGTIPAEIGSLRNL 69
           LS LN  CF NLES++I    L G IP EIG LSKL  L + YN+L G +P  +G+L  L
Sbjct: 88  LSTLNLACFKNLESLVIRKIGLEGTIPKEIGHLSKLTHLDMSYNNLQGQVPHSLGNLSKL 147

Query: 70  VELDLSNNILNGSIPLEFGNLKDLDALRLRGNKLDGLIPSSIGNLTNLTHLDLSLNQLSG 129
             LDLS NIL G +P   GNL  L  L L  N L G++P S+GNL+ LTHLDLS N LSG
Sbjct: 148 THLDLSANILKGQVPHSLGNLSKLTHLDLSDNILSGVVPHSLGNLSKLTHLDLSDNLLSG 207

Query: 130 RLPQEVGNLKNLLSLFLDNNNLTGPIPSTLYHLNQLSNLYLAYNNLVGPLPKEVGNMKNL 189
            +P  +GNL  L  L L +N L+G +P +L +L++L++L L+ N L G +P  +GN+  L
Sbjct: 208 VVPHSLGNLSKLTHLDLSDNLLSGVVPPSLGNLSKLTHLDLSVNLLKGQVPHSLGNLSKL 267

Query: 190 DSLLLNRNSLTGPIPSTIGYLNLGGKLDLSHNRLDSPIPPTIGNLTNLTSLDLSSNQLSG 249
             L  + NSL G IP+++G       LD+S+N L+  IP  +G +  L SL+LS+N++SG
Sbjct: 268 THLDFSYNSLEGEIPNSLGNHRQLKYLDISNNNLNGSIPHELGFIKYLGSLNLSTNRISG 327

Query: 250 LLPREVGNLKYLDSLSLDGNNLIGSIPPTIGYLTNLTSLNLGYNQLSSSIPPELMNCSQL 309
            +P  +GNL  L  L + GN+L+G IPP+IG L +L SL +  N +  SIPP L     L
Sbjct: 328 DIPPSLGNLVKLTHLVIYGNSLVGKIPPSIGNLRSLESLEISDNYIQGSIPPRLGLLKNL 387

Query: 310 QNLVLSHNTLSGIVPPEIGNLTHLRQLDLSHNFINGTIPSQLGYIPNISAVDLSKNNLSG 369
             L LSHN + G +PP +GNL  L +LD+S+N I G +P +LG + N++ +DLS N L+G
Sbjct: 388 TTLRLSHNRIKGEIPPSLGNLKQLEELDISNNNIQGFLPFELGLLKNLTTLDLSHNRLNG 447

Query: 370 VVPASVRIIPKLI 382
            +P S++ + +LI
Sbjct: 448 NLPISLKNLTQLI 460

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|358346993|ref|XP_003637547.1| Receptor protein kinase-like protein [Medicago truncatula] gi|355503482|gb|AES84685.1| Receptor protein kinase-like protein [Medicago truncatula]

 Score =  276 bits (705), Expect = 2e-71,   Method: Compositional matrix adjust.
 Identities = 178/360 (49%), Positives = 232/360 (64%), Gaps = 1/360 (0%)

Query: 20  NLESIIIPYTLLSGRIPSEIGALSKLEELALPYNSLTGTIPAEIGSLRNLVELDLSNNIL 79
           NL++I +    LSG IP  IG L+KL EL    N+LTG IP  IG+L NL  +DLS N L
Sbjct: 146 NLDTIDLSQNTLSGPIPFTIGNLTKLSELYFYSNALTGQIPPSIGNLINLDIIDLSRNHL 205

Query: 80  NGSIPLEFGNLKDLDALRLRGNKLDGLIPSSIGNLTNLTHLDLSLNQLSGRLPQEVGNLK 139
           +G IP   GNL +LD   L  N L G IP +IGNLT L+ L L LN L+G++P  +GNL 
Sbjct: 206 SGPIPPSIGNLINLDYFSLSQNNLSGPIPFTIGNLTKLSTLSLYLNALTGQIPPSIGNLI 265

Query: 140 NLLSLFLDNNNLTGPIPSTLYHLNQLSNLYLAYNNLVGPLPKEVGNMKNLDSLLLNRNSL 199
           NL  ++L++N L+GP PST+ +L +LS L L  N L G +P  +GN+ NLD++ L+RN L
Sbjct: 266 NLDIIYLNDNELSGPFPSTITNLTKLSTLSLYLNALTGQIPPSIGNLINLDNIYLSRNHL 325

Query: 200 TGPIPSTIGYLNLGGKLDLSHNRLDSPIPPTIGNLTNLTSLDLSSNQLSGLLPREVGNLK 259
           +GPIPSTIG L   G L L  N L   IPP+IGNL NL ++ LS N LSG +P  +GNL 
Sbjct: 326 SGPIPSTIGNLTKLGTLSLYLNALTGQIPPSIGNLINLDNIYLSRNHLSGPIPPSIGNLI 385

Query: 260 YLDSLSLDGNNLIGSIPPTIGYLTNLTSLNLGYNQLSSSIPPELMNCSQLQNLVLSHNTL 319
            LD  SL  NNL G IP TIG LT L++L+L  N L+  IPP + N   L N+ LS N L
Sbjct: 386 NLDYFSLSQNNLSGPIPSTIGNLTKLSTLSLYLNALTGQIPPSVGNLINLDNISLSRNHL 445

Query: 320 SGIVPPEIGNLTHLRQLDLSHNFINGTIPSQLGYIPNISAVDLSKNNLSGVVPASV-RII 378
           SG +PP IGNLT+L    LS N ++G IPS +G +  +S + LS N+L+  +P  + R+I
Sbjct: 446 SGPIPPSIGNLTNLDYFSLSQNNLSGPIPSTIGNLTKLSEIHLSFNSLTENIPTEMNRLI 505

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|299470286|emb|CBN79590.1| LRR-GTPase of the ROCO family [Ectocarpus siliculosus]

 Score =  270 bits (690), Expect = 1e-69,   Method: Compositional matrix adjust.
 Identities = 168/371 (45%), Positives = 228/371 (61%), Gaps = 3/371 (0%)

Query: 21  LESIIIPYTLLSGRIPSEIGALSKLEELALPYNSLTGTIPAEIGSLRNLVELDLSNNILN 80
           LES+ +    L G IP E+GAL+ LE+L L  N LTG IP E+G+LR L  L LS N L 
Sbjct: 71  LESLDLGINKLGGHIPKELGALTILEQLWLERNQLTGPIPREVGNLRELKALWLSGNRLT 130

Query: 81  GSIPLEFGNLKDLDALRLRGNKLDGLIPSSIGNLTNLTHLDLSLNQLSGRLPQEVGNLKN 140
           G+IP + G L +L  L L   +L G I   +G LT LT L L  N+L+G +P E+G L  
Sbjct: 131 GAIPAQHGALSELSCLNLSKTQLSGPILKELGALTKLTSLFLRSNKLTGPIPPELGKLAA 190

Query: 141 LLSLFLDNNNLTGPIPSTLYHLNQLSNLYLAYNNLVGPLPKEVGNMKNLDSLLLNRNSLT 200
           L SL L  N LTG IP+ L  LN+L+ L L+ N L GP+P EVG +  +  L L  N L+
Sbjct: 191 LESLDLTGNQLTGAIPAQLGDLNKLTALNLSNNQLSGPIPPEVGKLGAVKQLDLWGNKLS 250

Query: 201 GPIPSTIGYLNLGGKLDLSHNRLDSPIPPTIGNLTNLTSLDLSSNQLSGLLPREVGNLKY 260
           GPIP  +G L     L L  N+   PIPP +GNL+ L  L+L +NQLSG +P EVGNL+ 
Sbjct: 251 GPIPKELGALTKLASLFLRSNKFTDPIPPEMGNLSALQHLELQNNQLSGPIPSEVGNLRE 310

Query: 261 LDSLSLDGNNLIGSIPPTIGYLTNLTSLNLGYNQLSSSIPPELMNCSQLQNLVLSHNTLS 320
           L +L L GN L G+IP  +G L  LT LNL  NQLS  IP  L   S+L +L L  N LS
Sbjct: 311 LKTLWLSGNQLTGAIPAQLGALNELTCLNLSKNQLSGEIPASLGQVSKLDSLYLHQNKLS 370

Query: 321 GIVPPEIGNLTHLRQLDLSHNFINGTIPSQLGYIPNISAVDLSKNNLSGVVP---ASVRI 377
           G +P E+G+L+ L  L L++N + G IP++LG +  ++++ L  N L+G +P   A+++ 
Sbjct: 371 GYIPKELGSLSKLGVLRLNNNDLTGPIPNELGALTKLTSLFLVCNKLTGAIPAQLAALKE 430

Query: 378 IPKLIVSENNL 388
           + +L++S N L
Sbjct: 431 LTRLLLSGNQL 441

Source: Ectocarpus siliculosus

Species: Ectocarpus siliculosus

Genus: Ectocarpus

Family: Ectocarpaceae

Order: Ectocarpales

Phylum: Phaeophyceae

Superkingdom: Eukaryota

>gi|153870007|ref|ZP_01999496.1| conserved hypothetical protein [Beggiatoa sp. PS] gi|152073527|gb|EDN70504.1| conserved hypothetical protein [Beggiatoa sp. PS]

 Score =  269 bits (688), Expect = 2e-69,   Method: Compositional matrix adjust.
 Identities = 170/318 (53%), Positives = 209/318 (65%)

Query: 31  LSGRIPSEIGALSKLEELALPYNSLTGTIPAEIGSLRNLVELDLSNNILNGSIPLEFGNL 90
           L+G IPS+IG L++L  L L  N LTG+IP EIG+L  L EL L+ N L+GSIP E GNL
Sbjct: 173 LNGSIPSKIGNLNQLVHLDLACNHLTGSIPPEIGNLTQLTELILAFNQLSGSIPPEIGNL 232

Query: 91  KDLDALRLRGNKLDGLIPSSIGNLTNLTHLDLSLNQLSGRLPQEVGNLKNLLSLFLDNNN 150
             L  L L  N L+GLIP  IGNLT L  L+L  N LSG +P E+GNL  L  L+L +N+
Sbjct: 233 IQLTELNLGNNPLNGLIPPEIGNLTQLESLNLYENLLSGSIPPEIGNLTQLTRLYLADNS 292

Query: 151 LTGPIPSTLYHLNQLSNLYLAYNNLVGPLPKEVGNMKNLDSLLLNRNSLTGPIPSTIGYL 210
           L+G IP  + +L QL+ L L +N L G +P E+GN+  L  L L+ N L+G IP  IG L
Sbjct: 293 LSGSIPQEIGNLTQLNLLSLMFNQLSGSIPPEIGNLTQLTYLSLSHNQLSGSIPPEIGNL 352

Query: 211 NLGGKLDLSHNRLDSPIPPTIGNLTNLTSLDLSSNQLSGLLPREVGNLKYLDSLSLDGNN 270
               +L L+ N L   IPP IGNLT L SL L +NQLS  +P E+G+L  LD+L L GN 
Sbjct: 353 TQLTELYLADNSLSGSIPPEIGNLTQLVSLWLGNNQLSASIPPEIGHLTQLDTLILSGNQ 412

Query: 271 LIGSIPPTIGYLTNLTSLNLGYNQLSSSIPPELMNCSQLQNLVLSHNTLSGIVPPEIGNL 330
           L GSIPP IG+LT L  L L  NQLS SIPPE+ N +QL NL L+ N LSG +PPEIGNL
Sbjct: 413 LSGSIPPEIGHLTQLMYLYLDSNQLSGSIPPEIGNLTQLYNLELNSNQLSGSIPPEIGNL 472

Query: 331 THLRQLDLSHNFINGTIP 348
             L  LDLS N ++G IP
Sbjct: 473 IELYYLDLSKNQLSGDIP 490

Source: Beggiatoa sp. PS

Species: Beggiatoa sp. PS

Genus: Beggiatoa

Family: Thiotrichaceae

Order: Thiotrichales

Class: Gammaproteobacteria

Phylum: Proteobacteria

Superkingdom: Bacteria

>gi|302795083|ref|XP_002979305.1| hypothetical protein SELMODRAFT_418921 [Selaginella moellendorffii] gi|300153073|gb|EFJ19713.1| hypothetical protein SELMODRAFT_418921 [Selaginella moellendorffii]

 Score =  268 bits (686), Expect = 3e-69,   Method: Compositional matrix adjust.
 Identities = 174/400 (43%), Positives = 237/400 (59%), Gaps = 41/400 (10%)

Query: 14  NFTCFPNLESIIIPYTLLSG-RIPSEIGALSKLEELALPYNSLTGTIPAEIGSLRNLVEL 72
           N T    + SI++P   L G  +  +IG+LSKLE+LALP N L+G IP E+  L+NLV L
Sbjct: 84  NSTGLVQVVSIVLPKASLDGGFLVGDIGSLSKLEKLALPGNRLSGRIPVELSILQNLVSL 143

Query: 73  DLSNNILNGSIPLEFGNLKDLDALRLRGNKLDGLIPSSIGNLTNLTHLDLSLNQLSGRLP 132
           DLS+N+L G+IP+E G+L+ L AL L  N L G+IP  IGNLT LT L L  NQL G++P
Sbjct: 144 DLSSNLLWGTIPVELGSLQKLKALSLANNSLTGVIPPEIGNLTQLTVLYLQQNQLVGKIP 203

Query: 133 QEVGNLKNLLSLFLDNNNLTGPIPSTLYHLNQLSNLYLAYNNLVGPLPKEVGNMKNLDSL 192
            E+ +L  L +L+L +N LTGPIP  L  L +L+ L L  N L G +P+ + N+ NL++L
Sbjct: 204 AELCDLTALEALYLHSNYLTGPIPPELGRLKKLAVLLLFSNELTGSIPETLANLTNLEAL 263

Query: 193 LLNRNSLTGPIPSTIG----------------------------------------YLNL 212
           +L+ NSL+G IP  IG                                        Y N 
Sbjct: 264 VLSENSLSGSIPPAIGSFPVLRVLYLDSNNLSGLIPPEIGLLPCLQKYCSSNPTNAYFNG 323

Query: 213 GGKLDLSHNRLDSPIPPTIGNLTNLTSLDLSSNQLSGLLPREVGNLKYLDSLSLDGNNLI 272
              + L  N L  PIPP IGNL +L  L+LSSNQLSG +P E+GN+  L  L L  NNL 
Sbjct: 324 PPAIRLFSNNLQGPIPPEIGNLQSLEILELSSNQLSGGIPPELGNMTSLVHLDLQFNNLS 383

Query: 273 GSIPPTIGYLTNLTSLNLGYNQLSSSIPPELMNCSQLQNLVLSHNTLSGIVPPEIGNLTH 332
           G IPP I  L+ L  L+LGYN+LS +IP E+     L+ + L +N+LSG +P ++ +L  
Sbjct: 384 GPIPPDISLLSRLEVLSLGYNRLSGAIPYEVGLLFSLRLMYLPNNSLSGHIPADLEHLKM 443

Query: 333 LRQLDLSHNFINGTIPSQLGYIPNISAVDLSKNNLSGVVP 372
           L Q+DL  N + G+IP QLG++PN+ A+ L +N L G +P
Sbjct: 444 LTQVDLDFNELTGSIPKQLGFLPNLQALFLQQNKLQGSIP 483

Source: Selaginella moellendorffii

Species: Selaginella moellendorffii

Genus: Selaginella

Family: Selaginellaceae

Order: Selaginellales

Class: Isoetopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225465647|ref|XP_002270862.1| PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At4g08850-like [Vitis vinifera]

 Score =  268 bits (684), Expect = 4e-69,   Method: Compositional matrix adjust.
 Identities = 164/374 (43%), Positives = 239/374 (63%), Gaps = 1/374 (0%)

Query: 4   NGNAAELSQLNFTCFPNLESIIIPYTLLSGRIPSEIGALSKLEELALPYNSLTGTIPAEI 63
           +G   ELS+L F+ FP+L  + + ++ + GRIP EIG L+KL  L +    + G +P  +
Sbjct: 85  DGKMVELSKLKFSSFPSLLHLYVSHSSIYGRIPDEIGMLTKLTYLRISECDVYGELPVSL 144

Query: 64  GSLRNLVELDLSNNILNGSIPLEFGNLKDLDALRLRGNK-LDGLIPSSIGNLTNLTHLDL 122
           G+L  L ELDL+ N L+G IP   G LK+L  L L  N  L G+IP S+G L NL +LDL
Sbjct: 145 GNLTLLEELDLAYNNLSGVIPSSLGYLKNLIHLDLSFNYGLSGVIPPSLGYLKNLKYLDL 204

Query: 123 SLNQLSGRLPQEVGNLKNLLSLFLDNNNLTGPIPSTLYHLNQLSNLYLAYNNLVGPLPKE 182
           S+N+++G +P ++GNLKNL  L+L +N+L+G IPS L +L+ L  L+L +N + G +P E
Sbjct: 205 SINEINGSIPSQIGNLKNLTHLYLVSNSLSGVIPSPLANLSNLEYLFLNFNRINGSIPSE 264

Query: 183 VGNMKNLDSLLLNRNSLTGPIPSTIGYLNLGGKLDLSHNRLDSPIPPTIGNLTNLTSLDL 242
           +GN+KNL  L L+ NSL G IPS++G+L     L L +N++   IP + G+LTNLT L L
Sbjct: 265 IGNLKNLVQLCLSHNSLIGAIPSSLGHLTNLTYLHLFNNQIQGGIPLSFGHLTNLTDLYL 324

Query: 243 SSNQLSGLLPREVGNLKYLDSLSLDGNNLIGSIPPTIGYLTNLTSLNLGYNQLSSSIPPE 302
             NQ++G +P  + NLK L  L LD NNL G IP ++GYL +L   N+  NQ+S  IP  
Sbjct: 325 CYNQINGSIPPIIWNLKNLIHLRLDHNNLTGVIPSSLGYLIHLHEFNISGNQISGQIPSS 384

Query: 303 LMNCSQLQNLVLSHNTLSGIVPPEIGNLTHLRQLDLSHNFINGTIPSQLGYIPNISAVDL 362
           + N + L  L LS N + G +P ++ NL  L  L+LSHN ++G+IP+ L Y     ++DL
Sbjct: 385 IGNLNNLTRLDLSDNLIHGKIPSQVQNLKRLVYLNLSHNKLSGSIPTLLIYDHIRPSLDL 444

Query: 363 SKNNLSGVVPASVR 376
           S N+L G +P  ++
Sbjct: 445 SYNDLEGHIPFELQ 458

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356577797|ref|XP_003557009.1| PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At4g08850-like [Glycine max]

 Score =  266 bits (679), Expect = 2e-68,   Method: Compositional matrix adjust.
 Identities = 164/375 (43%), Positives = 235/375 (62%)

Query: 1   MDNNGNAAELSQLNFTCFPNLESIIIPYTLLSGRIPSEIGALSKLEELALPYNSLTGTIP 60
           + N G    L  LNF+  PN+ ++ + +  L+G IP +IG+LSKL  L L  N L+G IP
Sbjct: 82  LTNVGLRGTLQNLNFSLLPNILTLNMSHNSLNGTIPPQIGSLSKLARLDLSDNFLSGEIP 141

Query: 61  AEIGSLRNLVELDLSNNILNGSIPLEFGNLKDLDALRLRGNKLDGLIPSSIGNLTNLTHL 120
           + IG+L NL  L   +N L+G+IP   GNL +LD++ L  NKL G IP  IGNL+ L+ L
Sbjct: 142 STIGNLSNLYYLSFYDNSLSGAIPSSIGNLVNLDSMILHKNKLSGSIPFIIGNLSKLSVL 201

Query: 121 DLSLNQLSGRLPQEVGNLKNLLSLFLDNNNLTGPIPSTLYHLNQLSNLYLAYNNLVGPLP 180
            +  N+L+G +P  +GNL N+ SL L  N L+G IP T+ +L++LS LY++ N L GP+P
Sbjct: 202 SIYSNELTGPIPTSIGNLVNMDSLLLYENKLSGSIPFTIGNLSKLSGLYISLNELTGPIP 261

Query: 181 KEVGNMKNLDSLLLNRNSLTGPIPSTIGYLNLGGKLDLSHNRLDSPIPPTIGNLTNLTSL 240
             +GN+ NL+++ L +N L+G IP  IG L+   KL +  N L  PIP +IGNL NL S+
Sbjct: 262 ASIGNLVNLEAMRLFKNKLSGSIPFNIGNLSKLSKLSIHSNELTGPIPASIGNLVNLDSM 321

Query: 241 DLSSNQLSGLLPREVGNLKYLDSLSLDGNNLIGSIPPTIGYLTNLTSLNLGYNQLSSSIP 300
            L  N+LSG +P  +GNL     LS+  N L G IP +IG L +L SL L  N+LS SIP
Sbjct: 322 ILHKNKLSGSIPFIIGNLSKFSVLSISFNELTGPIPASIGNLVHLDSLLLEENKLSGSIP 381

Query: 301 PELMNCSQLQNLVLSHNTLSGIVPPEIGNLTHLRQLDLSHNFINGTIPSQLGYIPNISAV 360
             + N S+L  L +S N L+G +P  IGNL +L  + L  N ++G+IP  +G +  +S +
Sbjct: 382 FTIGNLSKLSGLYISLNELTGPIPASIGNLVNLEAMRLFKNKLSGSIPFTIGNLSKLSKL 441

Query: 361 DLSKNNLSGVVPASV 375
            +  N L+G +PAS+
Sbjct: 442 SIHSNELTGPIPASI 456

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297846638|ref|XP_002891200.1| hypothetical protein ARALYDRAFT_473694 [Arabidopsis lyrata subsp. lyrata] gi|297337042|gb|EFH67459.1| hypothetical protein ARALYDRAFT_473694 [Arabidopsis lyrata subsp. lyrata]

 Score =  266 bits (679), Expect = 2e-68,   Method: Compositional matrix adjust.
 Identities = 165/375 (44%), Positives = 225/375 (60%)

Query: 1   MDNNGNAAELSQLNFTCFPNLESIIIPYTLLSGRIPSEIGALSKLEELALPYNSLTGTIP 60
           + +N          F+  PNL SI +     SG IP + G LSKL    L  N LT  IP
Sbjct: 87  LTDNAIEGTFQDFPFSSLPNLASIDLSMNRFSGTIPPQFGNLSKLIYFDLSTNHLTREIP 146

Query: 61  AEIGSLRNLVELDLSNNILNGSIPLEFGNLKDLDALRLRGNKLDGLIPSSIGNLTNLTHL 120
             +G+L+NL  LDL +N L G IP + GN++ +  L L  NKL G IPSS+GNL NLT L
Sbjct: 147 PSLGNLKNLTVLDLHHNYLTGVIPPDLGNMESMTYLELSHNKLTGSIPSSLGNLKNLTVL 206

Query: 121 DLSLNQLSGRLPQEVGNLKNLLSLFLDNNNLTGPIPSTLYHLNQLSNLYLAYNNLVGPLP 180
            L  N L+G +P E+GN+++++ L L  N LTG IPS+L +L  L+ LYL +N L G +P
Sbjct: 207 YLYQNYLTGVIPPELGNMESMIDLELSTNKLTGSIPSSLGNLKNLTVLYLHHNYLTGVIP 266

Query: 181 KEVGNMKNLDSLLLNRNSLTGPIPSTIGYLNLGGKLDLSHNRLDSPIPPTIGNLTNLTSL 240
            E+GNM+++  L L+ N LTG IPS++G L     L L  N L   IPP +GN+ ++T L
Sbjct: 267 PELGNMESMIDLELSDNKLTGSIPSSLGNLKNLTVLYLYKNYLTGVIPPELGNMESMTYL 326

Query: 241 DLSSNQLSGLLPREVGNLKYLDSLSLDGNNLIGSIPPTIGYLTNLTSLNLGYNQLSSSIP 300
           DLS N+L+G +P  +GNLK L  L L  N L G IPP +G L ++  L L  N+L+ SIP
Sbjct: 327 DLSENKLTGSIPSSLGNLKNLTVLYLHHNYLTGVIPPELGNLESMIDLELSDNKLTGSIP 386

Query: 301 PELMNCSQLQNLVLSHNTLSGIVPPEIGNLTHLRQLDLSHNFINGTIPSQLGYIPNISAV 360
             L N   L  L L HN L+G++PPE+GN+  +  L LS N + G+IPS  G    + ++
Sbjct: 387 SSLGNLKNLTVLYLHHNYLTGVIPPELGNMESMIDLALSQNNLTGSIPSSFGNFTKLESL 446

Query: 361 DLSKNNLSGVVPASV 375
            L  N+LSG +P  V
Sbjct: 447 YLRDNHLSGTIPRGV 461

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225452751|ref|XP_002277606.1| PREDICTED: probable leucine-rich repeat receptor-like protein kinase At1g35710-like [Vitis vinifera]

 Score =  266 bits (679), Expect = 2e-68,   Method: Compositional matrix adjust.
 Identities = 177/399 (44%), Positives = 239/399 (59%), Gaps = 24/399 (6%)

Query: 1   MDNNGNAAELSQLNFTCFPNLESIIIPYTLLSGRIPSEIGALSKLEELALPYNSLTGTIP 60
            D+     ELS+L F+ FP+L  + +    L+G IP +IG L++L  L LP N+LTG +P
Sbjct: 76  FDSGKKLGELSKLEFSSFPSLVELFLSDCGLNGSIPHQIGTLTQLIILYLPLNNLTGELP 135

Query: 61  AEIGSLRNLVELDLSNNILNGSIPLEFGNLKDLDALRLRGNKLDGLIPSSIGNLTNLTHL 120
             + +L  L  L L +N L+GSIP E G +K+L    L  N L G+IPSS GNLTNLT+L
Sbjct: 136 LSLANLTQLEYLSLHSNRLHGSIPPEIGKMKNLIYFILHDNNLTGVIPSSFGNLTNLTYL 195

Query: 121 DLSLNQLSGRLPQEVGNLKNL--LS----------------------LFLDNNNLTGPIP 156
            L  NQ+SG +P ++G +KNL  LS                      LFLD NNLT  IP
Sbjct: 196 YLGSNQISGFIPPQIGKMKNLEFLSLSYNGLHGSIPPEIGKLQNLNYLFLDYNNLTSVIP 255

Query: 157 STLYHLNQLSNLYLAYNNLVGPLPKEVGNMKNLDSLLLNRNSLTGPIPSTIGYLNLGGKL 216
           S+  +L  L+ LYL  N + G +P ++G +KNL+ L L+ N L GPIP  IG L     L
Sbjct: 256 SSFGNLTNLTYLYLDSNQISGFIPPQIGKIKNLELLELSYNGLHGPIPLEIGKLKNLKIL 315

Query: 217 DLSHNRLDSPIPPTIGNLTNLTSLDLSSNQLSGLLPREVGNLKYLDSLSLDGNNLIGSIP 276
           +L +N L   IP + GNLTNLT L L  NQ+SG +P E+G +K L   +L  N+L G IP
Sbjct: 316 NLGYNNLIGVIPSSFGNLTNLTYLTLGGNQISGFIPPEIGKMKNLIFFNLGYNSLTGVIP 375

Query: 277 PTIGYLTNLTSLNLGYNQLSSSIPPELMNCSQLQNLVLSHNTLSGIVPPEIGNLTHLRQL 336
            + G LT+LTSL L  NQ++ SIPPE+     L  L L+ N +SG +P EI NL  L  L
Sbjct: 376 SSFGNLTHLTSLILRGNQINGSIPPEIGYLLDLLYLDLNTNQISGFIPEEILNLKKLGHL 435

Query: 337 DLSHNFINGTIPSQLGYIPNISAVDLSKNNLSGVVPASV 375
           D+S+N I+G IPS+LG +      +LS+NN+SG +P S+
Sbjct: 436 DISNNLISGKIPSELGNLKEAIYFNLSRNNISGTIPLSI 474

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|12054894|emb|CAC20842.1| receptor protein kinase [Pinus sylvestris]

 Score =  265 bits (678), Expect = 2e-68,   Method: Compositional matrix adjust.
 Identities = 158/356 (44%), Positives = 222/356 (62%)

Query: 20  NLESIIIPYTLLSGRIPSEIGALSKLEELALPYNSLTGTIPAEIGSLRNLVELDLSNNIL 79
           NL ++ +  T +SG+IP   G+L KL+ LA+    L+GTIPAE+G+   LV L L  N L
Sbjct: 246 NLVTLGLAETNISGKIPLSFGSLKKLQTLAIYTAFLSGTIPAELGNCSELVNLYLYENRL 305

Query: 80  NGSIPLEFGNLKDLDALRLRGNKLDGLIPSSIGNLTNLTHLDLSLNQLSGRLPQEVGNLK 139
           +G+IP E G L+ L+ L L  N+LDG IP+ +G+ ++L  +DLS N LSG +P   G+LK
Sbjct: 306 SGAIPRELGKLQKLEKLYLWDNELDGSIPAELGSCSSLKFVDLSTNSLSGSIPDSFGSLK 365

Query: 140 NLLSLFLDNNNLTGPIPSTLYHLNQLSNLYLAYNNLVGPLPKEVGNMKNLDSLLLNRNSL 199
           NL  L + +NN++G IP+ L +  +L+ + L  N + G +P E+G +K L  L L +N+L
Sbjct: 366 NLSELEITDNNVSGSIPAALANCTELTQIQLYNNQISGQMPAELGALKKLTVLFLWQNNL 425

Query: 200 TGPIPSTIGYLNLGGKLDLSHNRLDSPIPPTIGNLTNLTSLDLSSNQLSGLLPREVGNLK 259
            GPIPS++G  +    LDLSHNRL   IPP++  + NLT L L SN+L+G LP E+GN  
Sbjct: 426 EGPIPSSLGSCDNLQSLDLSHNRLTGSIPPSLFEIKNLTKLLLLSNELTGALPPEIGNCV 485

Query: 260 YLDSLSLDGNNLIGSIPPTIGYLTNLTSLNLGYNQLSSSIPPELMNCSQLQNLVLSHNTL 319
            L  L L  N L+  IP  IG L NL  L+L  NQ S SIP E+  CSQLQ L L  N L
Sbjct: 486 ALSRLRLGNNRLLNQIPREIGKLENLVFLDLAMNQFSGSIPAEIGGCSQLQMLDLHGNRL 545

Query: 320 SGIVPPEIGNLTHLRQLDLSHNFINGTIPSQLGYIPNISAVDLSKNNLSGVVPASV 375
            G +P  +G L  L+ +DLS N + G IP+ LG +  ++ + L+ N LSG +P  +
Sbjct: 546 GGELPRALGFLHGLQVVDLSANELTGLIPANLGNLVALTKLTLNGNALSGAIPWEI 601

Source: Pinus sylvestris

Species: Pinus sylvestris

Genus: Pinus

Family: Pinaceae

Order: Coniferales

Class: Coniferopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	408
TAIR|locus:2011339	1120	AT1G35710 [Arabidopsis thalian	0.948	0.345	0.374	3.7e-57
TAIR|locus:2170483	1173	FLS2 "FLAGELLIN-SENSITIVE 2" [	0.862	0.300	0.380	7.4e-54
TAIR|locus:2161825	1090	AT5G56040 [Arabidopsis thalian	0.924	0.345	0.356	2.6e-53
TAIR|locus:2154344	1135	AT5G48940 [Arabidopsis thalian	0.901	0.324	0.353	6.2e-53
TAIR|locus:2085949	1141	AT3G24240 [Arabidopsis thalian	0.879	0.314	0.366	4.6e-52
TAIR|locus:2131518	1091	AT4G26540 [Arabidopsis thalian	0.909	0.340	0.36	8.4e-52
TAIR|locus:2138268	1045	AT4G08850 [Arabidopsis thalian	0.904	0.353	0.343	2.5e-51
TAIR|locus:2122239	1136	AT4G36180 [Arabidopsis thalian	0.911	0.327	0.353	1.8e-50
TAIR|locus:2160791	1102	AT5G63930 [Arabidopsis thalian	0.938	0.347	0.343	2.8e-50
TAIR|locus:2120362	1249	GSO1 "GASSHO1" [Arabidopsis th	0.870	0.284	0.386	4.9e-50

TAIR|locus:2011339 AT1G35710 [Arabidopsis thaliana (taxid:3702)]

 Score = 597 (215.2 bits), Expect = 3.7e-57, P = 3.7e-57
 Identities = 146/390 (37%), Positives = 191/390 (48%)

Query:     1 MDNNGNAAELSQLNFTCFPNLESIIIPYTLLSGRIPSEIGALSKLEELALPYNSLTGTIP 60
             + N G         F    NL  + +   LLSG IP + G LSKL    L  N LTG I 
Sbjct:    84 LTNTGIEGTFQDFPFISLSNLAYVDLSMNLLSGTIPPQFGNLSKLIYFDLSTNHLTGEIS 143

Query:    61 AEIGSLRNLVELDLSNNILNGSIPLEFGNLKDLDALRLRGNKLDGLIPSSIGNLTNLTHL 120
               +G+L+NL  L L  N L   IP E GN++ +  L L  NKL G IPSS+GNL NL  L
Sbjct:   144 PSLGNLKNLTVLYLHQNYLTSVIPSELGNMESMTDLALSQNKLTGSIPSSLGNLKNLMVL 203

Query:   121 DLSLNQLSGRLPQEVGXXXXXXXXXXXXXXXTGPIPSTLYHLNQLSNLYLAYNNLVGPLP 180
              L  N L+G +P E+G               TG IPSTL +L  L  LYL  N L G +P
Sbjct:   204 YLYENYLTGVIPPELGNMESMTDLALSQNKLTGSIPSTLGNLKNLMVLYLYENYLTGVIP 263

Query:   181 KEVGNMKXXXXXXXXXXXXTGPIPSTIGYLNLGGKLDLSHNRLDSPIPPTIGXXXXXXXX 240
              E+GNM+            TG IPS++G L     L L  N L   IPP +G        
Sbjct:   264 PEIGNMESMTNLALSQNKLTGSIPSSLGNLKNLTLLSLFQNYLTGGIPPKLGNIESMIDL 323

Query:   241 XXXXXXXXGLLPREVGNLKYLDSLSLDGNNLIGSIPPTIGYLTNLTSLNLGYNQLSSSIP 300
                     G +P  +GNLK L  L L  N L G IPP +G + ++  L L  N+L+ SIP
Sbjct:   324 ELSNNKLTGSIPSSLGNLKNLTILYLYENYLTGVIPPELGNMESMIDLQLNNNKLTGSIP 383

Query:   301 PELMNCSQLQNLVLSHNTLSGIVPPEIGNLTHLRQLDLSHNFINGTIPSQLGYIPNISAV 360
                 N   L  L L  N L+G++P E+GN+  +  LDLS N + G++P   G    + ++
Sbjct:   384 SSFGNLKNLTYLYLYLNYLTGVIPQELGNMESMINLDLSQNKLTGSVPDSFGNFTKLESL 443

Query:   361 DLSKNNLSGVVPASVRI---IPKLIVSENN 387
              L  N+LSG +P  V     +  LI+  NN
Sbjct:   444 YLRVNHLSGAIPPGVANSSHLTTLILDTNN 473

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=ISS

GO:0004713 "protein tyrosine kinase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0006468 "protein phosphorylation" evidence=IEA;ISS

GO:0007169 "transmembrane receptor protein tyrosine kinase signaling pathway" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0000165 "MAPK cascade" evidence=RCA

GO:0009814 "defense response, incompatible interaction" evidence=RCA

TAIR|locus:2170483 FLS2 "FLAGELLIN-SENSITIVE 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 567 (204.7 bits), Expect = 7.4e-54, P = 7.4e-54
 Identities = 135/355 (38%), Positives = 187/355 (52%)

Query:    20 NLESIIIPYTLLSGRIPSEIGALSKLEELALPYNSLTGTIPAEIGSLRNLVELDLSNNIL 79
             NL  + +    L+G+IP + G L  L+ L L  N L G IPAEIG+  +LV+L+L +N L
Sbjct:   217 NLTDLDLSGNQLTGKIPRDFGNLLNLQSLVLTENLLEGDIPAEIGNCSSLVQLELYDNQL 276

Query:    80 NGSIPLEFGNLKDLDALRLRGNKLDGLIPSSIGNLTNLTHLDLSLNQLSGRLPQEVGXXX 139
              G IP E GNL  L ALR+  NKL   IPSS+  LT LTHL LS N L G + +E+G   
Sbjct:   277 TGKIPAELGNLVQLQALRIYKNKLTSSIPSSLFRLTQLTHLGLSENHLVGPISEEIGFLE 336

Query:   140 XXXXXXXXXXXXTGPIPSTLYHLNQLSNLYLAYNNLVGPLPKEVGNMKXXXXXXXXXXXX 199
                         TG  P ++ +L  L+ L + +NN+ G LP ++G +             
Sbjct:   337 SLEVLTLHSNNFTGEFPQSITNLRNLTVLTVGFNNISGELPADLGLLTNLRNLSAHDNLL 396

Query:   200 TGPIPSTIGYLNLGGKL-DLSHNRLDSPIPPTIGXXXXXXXXXXXXXXXXGLLPREVGNL 258
             TGPIPS+I     G KL DLSHN++   IP   G                G +P ++ N 
Sbjct:   397 TGPIPSSISNCT-GLKLLDLSHNQMTGEIPRGFGRMNLTFISIGRNHFT-GEIPDDIFNC 454

Query:   259 KYLDSLSLDGNNLIGSIPPTIGYLTNLTSLNLGYNQLSSSIPPELMNCSQLQNLVLSHNT 318
               L++LS+  NNL G++ P IG L  L  L + YN L+  IP E+ N   L  L L  N 
Sbjct:   455 SNLETLSVADNNLTGTLKPLIGKLQKLRILQVSYNSLTGPIPREIGNLKDLNILYLHSNG 514

Query:   319 LSGIVPPEIGNLTHLRQLDLSHNFINGTIPSQLGYIPNISAVDLSKNNLSGVVPA 373
              +G +P E+ NLT L+ L +  N + G IP ++  +  +S +DLS N  SG +PA
Sbjct:   515 FTGRIPREMSNLTLLQGLRMYSNDLEGPIPEEMFDMKLLSVLDLSNNKFSGQIPA 569

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA;ISS

GO:0004713 "protein tyrosine kinase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA;ISS

GO:0006468 "protein phosphorylation" evidence=ISS

GO:0007169 "transmembrane receptor protein tyrosine kinase signaling pathway" evidence=ISS

GO:0016301 "kinase activity" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0004675 "transmembrane receptor protein serine/threonine kinase activity" evidence=ISS

GO:0016020 "membrane" evidence=ISS;IDA

GO:0016045 "detection of bacterium" evidence=IMP

GO:0005886 "plasma membrane" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

GO:0042742 "defense response to bacterium" evidence=RCA;IMP

GO:0052544 "defense response by callose deposition in cell wall" evidence=IMP

GO:0010359 "regulation of anion channel activity" evidence=IMP

GO:0016310 "phosphorylation" evidence=RCA

GO:0005768 "endosome" evidence=IDA

GO:0006898 "receptor-mediated endocytosis" evidence=IDA

TAIR|locus:2161825 AT5G56040 [Arabidopsis thaliana (taxid:3702)]

 Score = 561 (202.5 bits), Expect = 2.6e-53, P = 2.6e-53
 Identities = 136/382 (35%), Positives = 194/382 (50%)

Query:    21 LESIIIPYTLLSGRIPSEIGALSKLEELALPYNSLTGTIPAEIGSLRNLVELDLSNNILN 80
             LE + +    LSG IP +I  L KL+ L+L  N+L G IP+E+G+L NL+EL L +N L 
Sbjct:   122 LEVLDLADNSLSGEIPVDIFKLKKLKILSLNTNNLEGVIPSELGNLVNLIELTLFDNKLA 181

Query:    81 GSIPLEFGNLKDLDALRLRGNK-LDGLIPSSIGNLTNLTHLDLSLNQLSGRLPQEVGXXX 139
             G IP   G LK+L+  R  GNK L G +P  IGN  +L  L L+   LSGRLP  +G   
Sbjct:   182 GEIPRTIGELKNLEIFRAGGNKNLRGELPWEIGNCESLVTLGLAETSLSGRLPASIGNLK 241

Query:   140 XXXXXXXXXXXXTGPIPSTLYHLNQLSNLYLAYNNLVGPLPKEVGNMKXXXXXXXXXXXX 199
                         +GPIP  + +  +L NLYL  N++ G +P  +G +K            
Sbjct:   242 KVQTIALYTSLLSGPIPDEIGNCTELQNLYLYQNSISGSIPVSMGRLKKLQSLLLWQNNL 301

Query:   200 TGPIPSTIGYLNLGGKLDLSHNRLDSPIPPTIGXXXXXXXXXXXXXXXXGLLPREVGNLK 259
              G IP+ +G       +DLS N L   IP + G                G +P E+ N  
Sbjct:   302 VGKIPTELGTCPELFLVDLSENLLTGNIPRSFGNLPNLQELQLSVNQLSGTIPEELANCT 361

Query:   260 YLDSLSLDGNNLIGSIPPTIGYLTNLTSLNLGYNQLSSSIPPELMNCSQLQNLVLSHNTL 319
              L  L +D N + G IPP IG LT+LT      NQL+  IP  L  C +LQ + LS+N L
Sbjct:   362 KLTHLEIDNNQISGEIPPLIGKLTSLTMFFAWQNQLTGIIPESLSQCQELQAIDLSYNNL 421

Query:   320 SGIVPPEIGNLTHLRQLDLSHNFINGTIPSQLGYIPNISAVDLSKNNLSGVVPASVRIIP 379
             SG +P  I  + +L +L L  N+++G IP  +G   N+  + L+ N L+G +PA +  + 
Sbjct:   422 SGSIPNGIFEIRNLTKLLLLSNYLSGFIPPDIGNCTNLYRLRLNGNRLAGNIPAEIGNLK 481

Query:   380 KLIVSENNLELENSTSSENAPP 401
              L    N +++  +    N PP
Sbjct:   482 NL----NFIDISENRLIGNIPP 499

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA;ISS

GO:0005524 "ATP binding" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0006468 "protein phosphorylation" evidence=IEA;ISS

GO:0007169 "transmembrane receptor protein tyrosine kinase signaling pathway" evidence=ISS

GO:0016301 "kinase activity" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0002237 "response to molecule of bacterial origin" evidence=RCA

GO:0006084 "acetyl-CoA metabolic process" evidence=RCA

GO:0007165 "signal transduction" evidence=RCA

GO:0010075 "regulation of meristem growth" evidence=RCA

GO:0010103 "stomatal complex morphogenesis" evidence=RCA

GO:0016126 "sterol biosynthetic process" evidence=RCA

GO:0016132 "brassinosteroid biosynthetic process" evidence=RCA

GO:0048443 "stamen development" evidence=RCA

GO:0048653 "anther development" evidence=RCA

TAIR|locus:2154344 AT5G48940 [Arabidopsis thaliana (taxid:3702)]

 Score = 558 (201.5 bits), Expect = 6.2e-53, P = 6.2e-53
 Identities = 132/373 (35%), Positives = 199/373 (53%)

Query:    20 NLESIIIPYTLLSGRIPSEIGALSKLEELALPYNSLTGTIPAEIGSLRNLVELDLSNNIL 79
             NL+ + +  T +SG +P  +G LSKL+ L++    L+G IP E+G+   L+ L L +N L
Sbjct:   228 NLKVLGLAATKISGSLPVSLGQLSKLQSLSVYSTMLSGEIPKELGNCSELINLFLYDNDL 287

Query:    80 NGSIPLEFGNLKDLDALRLRGNKLDGLIPSSIGNLTNLTHLDLSLNQLSGRLPQEVGXXX 139
             +G++P E G L++L+ + L  N L G IP  IG + +L  +DLS+N  SG +P+  G   
Sbjct:   288 SGTLPKELGKLQNLEKMLLWQNNLHGPIPEEIGFMKSLNAIDLSMNYFSGTIPKSFGNLS 347

Query:   140 XXXXXXXXXXXXTGPIPSTLYHLNQLSNLYLAYNNLVGPLPKEVGNMKXXXXXXXXXXXX 199
                         TG IPS L +  +L    +  N + G +P E+G +K            
Sbjct:   348 NLQELMLSSNNITGSIPSILSNCTKLVQFQIDANQISGLIPPEIGLLKELNIFLGWQNKL 407

Query:   200 TGPIPSTI-GYLNLGGKLDLSHNRLDSPIPPTIGXXXXXXXXXXXXXXXXGLLPREVGNL 258
              G IP  + G  NL   LDLS N L   +P  +                 G++P E+GN 
Sbjct:   408 EGNIPDELAGCQNLQA-LDLSQNYLTGSLPAGLFQLRNLTKLLLISNAISGVIPLEIGNC 466

Query:   259 KYLDSLSLDGNNLIGSIPPTIGYLTNLTSLNLGYNQLSSSIPPELMNCSQLQNLVLSHNT 318
               L  L L  N + G IP  IG+L NL+ L+L  N LS  +P E+ NC QLQ L LS+NT
Sbjct:   467 TSLVRLRLVNNRITGEIPKGIGFLQNLSFLDLSENNLSGPVPLEISNCRQLQMLNLSNNT 526

Query:   319 LSGIVPPEIGNLTHLRQLDLSHNFINGTIPSQLGYIPNISAVDLSKNNLSGVVPASV--- 375
             L G +P  + +LT L+ LD+S N + G IP  LG++ +++ + LSKN+ +G +P+S+   
Sbjct:   527 LQGYLPLSLSSLTKLQVLDVSSNDLTGKIPDSLGHLISLNRLILSKNSFNGEIPSSLGHC 586

Query:   376 RIIPKLIVSENNL 388
               +  L +S NN+
Sbjct:   587 TNLQLLDLSSNNI 599

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA;ISS

GO:0005524 "ATP binding" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0006468 "protein phosphorylation" evidence=IEA;ISS

GO:0007169 "transmembrane receptor protein tyrosine kinase signaling pathway" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0002237 "response to molecule of bacterial origin" evidence=RCA

GO:0007165 "signal transduction" evidence=RCA

GO:0010103 "stomatal complex morphogenesis" evidence=RCA

GO:0048443 "stamen development" evidence=RCA

TAIR|locus:2085949 AT3G24240 [Arabidopsis thaliana (taxid:3702)]

 Score = 550 (198.7 bits), Expect = 4.6e-52, P = 4.6e-52
 Identities = 133/363 (36%), Positives = 185/363 (50%)

Query:    31 LSGRIPSEIGALSKLEELALPYNSLTGTIPAEIGSLRNLVELDLSNNILNGSIPLEFGNL 90
             LSG IP EIG L+KLE+L L  NSL G IP EIG+  NL  +DLS N+L+GSIP   G L
Sbjct:   286 LSGSIPREIGQLTKLEQLFLWQNSLVGGIPEEIGNCSNLKMIDLSLNLLSGSIPSSIGRL 345

Query:    91 KDLDALRLRGNKLDGLIPSSIGNLTNLTHLDLSLNQLSGRLPQEVGXXXXXXXXXXXXXX 150
               L+   +  NK  G IP++I N ++L  L L  NQ+SG +P E+G              
Sbjct:   346 SFLEEFMISDNKFSGSIPTTISNCSSLVQLQLDKNQISGLIPSELGTLTKLTLFFAWSNQ 405

Query:   151 XTGPIPSTLYHLNQLSNLYLAYNNLVGPLPKEVGNMKXXXXXXXXXXXXTGPIPSTIGYL 210
               G IP  L     L  L L+ N+L G +P  +  ++            +G IP  IG  
Sbjct:   406 LEGSIPPGLADCTDLQALDLSRNSLTGTIPSGLFMLRNLTKLLLISNSLSGFIPQEIGNC 465

Query:   211 NLGGKLDLSHNRLDSPIPPTIGXXXXXXXXXXXXXXXXGLLPREVGNLKYLDSLSLDGNN 270
             +   +L L  NR+   IP  IG                G +P E+G+   L  + L  N+
Sbjct:   466 SSLVRLRLGFNRITGEIPSGIGSLKKINFLDFSSNRLHGKVPDEIGSCSELQMIDLSNNS 525

Query:   271 LIGSIPPTIGYLTNLTSLNLGYNQLSSSIPPELMNCSQLQNLVLSHNTLSGIVPPEIGNL 330
             L GS+P  +  L+ L  L++  NQ S  IP  L     L  L+LS N  SG +P  +G  
Sbjct:   526 LEGSLPNPVSSLSGLQVLDVSANQFSGKIPASLGRLVSLNKLILSKNLFSGSIPTSLGMC 585

Query:   331 THLRQLDLSHNFINGTIPSQLGYIPNIS-AVDLSKNNLSGVVPASVRIIPKLIV---SEN 386
             + L+ LDL  N ++G IPS+LG I N+  A++LS N L+G +P+ +  + KL +   S N
Sbjct:   586 SGLQLLDLGSNELSGEIPSELGDIENLEIALNLSSNRLTGKIPSKIASLNKLSILDLSHN 645

Query:   387 NLE 389
              LE
Sbjct:   646 MLE 648

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA;ISS

GO:0005524 "ATP binding" evidence=IEA;ISS

GO:0006468 "protein phosphorylation" evidence=IEA;ISS

GO:0007169 "transmembrane receptor protein tyrosine kinase signaling pathway" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0000041 "transition metal ion transport" evidence=RCA

GO:0002237 "response to molecule of bacterial origin" evidence=RCA

GO:0007165 "signal transduction" evidence=RCA

GO:0010103 "stomatal complex morphogenesis" evidence=RCA

GO:0010359 "regulation of anion channel activity" evidence=RCA

GO:0048443 "stamen development" evidence=RCA

TAIR|locus:2131518 AT4G26540 [Arabidopsis thaliana (taxid:3702)]

 Score = 547 (197.6 bits), Expect = 8.4e-52, P = 8.4e-52
 Identities = 135/375 (36%), Positives = 189/375 (50%)

Query:    18 FPNLESIIIPYTLLSGRIPSEIGALSKLEELALPYNSLTGTIPAEIGSLRNLVELDLSNN 77
             F  LE + +    LSG IP EI  L KL+ L+L  N+L G IP EIG+L  LVEL L +N
Sbjct:   116 FTELELLDLSDNSLSGDIPVEIFRLKKLKTLSLNTNNLEGHIPMEIGNLSGLVELMLFDN 175

Query:    78 ILNGSIPLEFGNLKDLDALRLRGNK-LDGLIPSSIGNLTNLTHLDLSLNQLSGRLPQEVG 136
              L+G IP   G LK+L  LR  GNK L G +P  IGN  NL  L L+   LSG+LP  +G
Sbjct:   176 KLSGEIPRSIGELKNLQVLRAGGNKNLRGELPWEIGNCENLVMLGLAETSLSGKLPASIG 235

Query:   137 XXXXXXXXXXXXXXXTGPIPSTLYHLNQLSNLYLAYNNLVGPLPKEVGNMKXXXXXXXXX 196
                            +GPIP  + +  +L NLYL  N++ G +P  +G +K         
Sbjct:   236 NLKRVQTIAIYTSLLSGPIPDEIGYCTELQNLYLYQNSISGSIPTTIGGLKKLQSLLLWQ 295

Query:   197 XXXTGPIPSTIGYLNLGGKLDLSHNRLDSPIPPTIGXXXXXXXXXXXXXXXXGLLPREVG 256
                 G IP+ +G       +D S N L   IP + G                G +P E+ 
Sbjct:   296 NNLVGKIPTELGNCPELWLIDFSENLLTGTIPRSFGKLENLQELQLSVNQISGTIPEELT 355

Query:   257 NLKYLDSLSLDGNNLIGSIPPTIGYLTNLTSLNLGYNQLSSSIPPELMNCSQLQNLVLSH 316
             N   L  L +D N + G IP  +  L +LT      N+L+ +IP  L  C +LQ + LS+
Sbjct:   356 NCTKLTHLEIDNNLITGEIPSLMSNLRSLTMFFAWQNKLTGNIPQSLSQCRELQAIDLSY 415

Query:   317 NTLSGIVPPEIGNLTHLRQLDLSHNFINGTIPSQLGYIPNISAVDLSKNNLSGVVPASVR 376
             N+LSG +P EI  L +L +L L  N ++G IP  +G   N+  + L+ N L+G +P+ + 
Sbjct:   416 NSLSGSIPKEIFGLRNLTKLLLLSNDLSGFIPPDIGNCTNLYRLRLNGNRLAGSIPSEIG 475

Query:   377 IIPKLI---VSENNL 388
              +  L    +SEN L
Sbjct:   476 NLKNLNFVDISENRL 490

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005886 "plasma membrane" evidence=ISM;IDA

GO:0006468 "protein phosphorylation" evidence=IEA

GO:0016301 "kinase activity" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0002237 "response to molecule of bacterial origin" evidence=RCA

GO:0007165 "signal transduction" evidence=RCA

GO:0010103 "stomatal complex morphogenesis" evidence=RCA

GO:0048443 "stamen development" evidence=RCA

TAIR|locus:2138268 AT4G08850 [Arabidopsis thaliana (taxid:3702)]

 Score = 542 (195.9 bits), Expect = 2.5e-51, P = 2.5e-51
 Identities = 131/381 (34%), Positives = 190/381 (49%)

Query:    18 FPNLESIIIPYTL---LSGRIPSEIGALSKLEELALPYNSLTGTIPAEIGSLRNLVELDL 74
             F NL  ++  Y     LSG IPSEIG L  L EL L  N+LTG IP+  G+L+N+  L++
Sbjct:   210 FGNLTKLVNLYLFINSLSGSIPSEIGNLPNLRELCLDRNNLTGKIPSSFGNLKNVTLLNM 269

Query:    75 SNNILNGSIPLEFGNLKDLDALRLRGNKLDGLIPSSIGNLTNLTHLDLSLNQLSGRLPQE 134
               N L+G IP E GN+  LD L L  NKL G IPS++GN+  L  L L LNQL+G +P E
Sbjct:   270 FENQLSGEIPPEIGNMTALDTLSLHTNKLTGPIPSTLGNIKTLAVLHLYLNQLNGSIPPE 329

Query:   135 VGXXXXXXXXXXXXXXXTGPIPSTLYHLNQLSNLYLAYNNLVGPLPKEVGNMKXXXXXXX 194
             +G               TGP+P +   L  L  L+L  N L GP+P  + N         
Sbjct:   330 LGEMESMIDLEISENKLTGPVPDSFGKLTALEWLFLRDNQLSGPIPPGIANSTELTVLQL 389

Query:   195 XXXXXTGPIPSTIGYLNLGGKLD---LSHNRLDSPIPPTIGXXXXXXXXXXXXXXXXGLL 251
                  TG +P TI     GGKL+   L  N  + P+P ++                 G +
Sbjct:   390 DTNNFTGFLPDTICR---GGKLENLTLDDNHFEGPVPKSLRDCKSLIRVRFKGNSFSGDI 446

Query:   252 PREVGNLKYLDSLSLDGNNLIGSIPPTIGYLTNLTSLNLGYNQLSSSIPPELMNCSQLQN 311
                 G    L+ + L  NN  G +         L +  L  N ++ +IPPE+ N +QL  
Sbjct:   447 SEAFGVYPTLNFIDLSNNNFHGQLSANWEQSQKLVAFILSNNSITGAIPPEIWNMTQLSQ 506

Query:   312 LVLSHNTLSGIVPPEIGNLTHLRQLDLSHNFINGTIPSQLGYIPNISAVDLSKNNLSGVV 371
             L LS N ++G +P  I N+  + +L L+ N ++G IPS +  + N+  +DLS N  S  +
Sbjct:   507 LDLSSNRITGELPESISNINRISKLQLNGNRLSGKIPSGIRLLTNLEYLDLSSNRFSSEI 566

Query:   372 PASVRIIPKLI---VSENNLE 389
             P ++  +P+L    +S N+L+
Sbjct:   567 PPTLNNLPRLYYMNLSRNDLD 587

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004713 "protein tyrosine kinase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0005886 "plasma membrane" evidence=ISM;IDA

GO:0006468 "protein phosphorylation" evidence=IEA

GO:0016301 "kinase activity" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0016020 "membrane" evidence=IDA

GO:0009506 "plasmodesma" evidence=IDA

GO:0006857 "oligopeptide transport" evidence=RCA

GO:0006995 "cellular response to nitrogen starvation" evidence=RCA

GO:0009627 "systemic acquired resistance" evidence=RCA

GO:0031347 "regulation of defense response" evidence=RCA

TAIR|locus:2122239 AT4G36180 [Arabidopsis thaliana (taxid:3702)]

 Score = 535 (193.4 bits), Expect = 1.8e-50, P = 1.8e-50
 Identities = 133/376 (35%), Positives = 185/376 (49%)

Query:    20 NLESIIIPYTLLSGRIPSEIGALSKLEELALPYNSLTGTIPAEIGSLRNLVELDLSNNIL 79
             +L+++ +   L SG IP +IG L +LEEL L  NSLTG IP EI    +L  LD   N L
Sbjct:   333 SLKNLDVSGNLFSGEIPPDIGNLKRLEELKLANNSLTGEIPVEIKQCGSLDVLDFEGNSL 392

Query:    80 NGSIPLEFGNLKDLDALRLRGNKLDGLIPSSIGNLTNLTHLDLSLNQLSGRLPQEVGXXX 139
              G IP   G +K L  L L  N   G +PSS+ NL  L  L+L  N L+G  P E+    
Sbjct:   393 KGQIPEFLGYMKALKVLSLGRNSFSGYVPSSMVNLQQLERLNLGENNLNGSFPVELMALT 452

Query:   140 XXXXXXXXXXXXTGPIPSTLYHLNQLSNLYLAYNNLVGPLPKEVGNMKXXXXXXXXXXXX 199
                         +G +P ++ +L+ LS L L+ N   G +P  VGN+             
Sbjct:   453 SLSELDLSGNRFSGAVPVSISNLSNLSFLNLSGNGFSGEIPASVGNLFKLTALDLSKQNM 512

Query:   200 TGPIPSTIGYLNLGGKLDLSHNRLDSPIPPTIGXXXXXXXXXXXXXXXXGLLPREVGNLK 259
             +G +P  +  L     + L  N     +P                    G +P+  G L+
Sbjct:   513 SGEVPVELSGLPNVQVIALQGNNFSGVVPEGFSSLVSLRYVNLSSNSFSGEIPQTFGFLR 572

Query:   260 YLDSLSLDGNNLIGSIPPTIGYLTNLTSLNLGYNQLSSSIPPELMNCSQLQNLVLSHNTL 319
              L SLSL  N++ GSIPP IG  + L  L L  N+L   IP +L    +L+ L L  N L
Sbjct:   573 LLVSLSLSDNHISGSIPPEIGNCSALEVLELRSNRLMGHIPADLSRLPRLKVLDLGQNNL 632

Query:   320 SGIVPPEIGNLTHLRQLDLSHNFINGTIPSQLGYIPNISAVDLSKNNLSGVVPASVRIIP 379
             SG +PPEI   + L  L L HN ++G IP     + N++ +DLS NNL+G +PAS+ +I 
Sbjct:   633 SGEIPPEISQSSSLNSLSLDHNHLSGVIPGSFSGLSNLTKMDLSVNNLTGEIPASLALIS 692

Query:   380 K-LI---VSENNLELE 391
               L+   VS NNL+ E
Sbjct:   693 SNLVYFNVSSNNLKGE 708

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA;ISS

GO:0005524 "ATP binding" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM;IDA

GO:0006468 "protein phosphorylation" evidence=IEA;ISS

GO:0007169 "transmembrane receptor protein tyrosine kinase signaling pathway" evidence=ISS

GO:0016301 "kinase activity" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0000226 "microtubule cytoskeleton organization" evidence=RCA

GO:0000911 "cytokinesis by cell plate formation" evidence=RCA

GO:0002237 "response to molecule of bacterial origin" evidence=RCA

GO:0006260 "DNA replication" evidence=RCA

GO:0006306 "DNA methylation" evidence=RCA

GO:0007165 "signal transduction" evidence=RCA

GO:0008283 "cell proliferation" evidence=RCA

GO:0009855 "determination of bilateral symmetry" evidence=RCA

GO:0010014 "meristem initiation" evidence=RCA

GO:0010073 "meristem maintenance" evidence=RCA

GO:0010075 "regulation of meristem growth" evidence=RCA

GO:0010103 "stomatal complex morphogenesis" evidence=RCA

GO:0030244 "cellulose biosynthetic process" evidence=RCA

GO:0048443 "stamen development" evidence=RCA

GO:0051567 "histone H3-K9 methylation" evidence=RCA

TAIR|locus:2160791 AT5G63930 [Arabidopsis thaliana (taxid:3702)]

 Score = 533 (192.7 bits), Expect = 2.8e-50, P = 2.8e-50
 Identities = 133/387 (34%), Positives = 193/387 (49%)

Query:    14 NFTCFPNLESIIIPYTLLSGRIPSEIGALSKLEELALPYNSLTGTIPAEIGSLRNLVELD 73
             N++  P + S+ +   +LSG++   IG L  L++L L YN L+G IP EIG+  +L  L 
Sbjct:    68 NYSSDPEVLSLNLSSMVLSGKLSPSIGGLVHLKQLDLSYNGLSGKIPKEIGNCSSLEILK 127

Query:    74 LSNNILNGSIPLEFGNLKDLDALRLRGNKLDGLIPSSIGNLTNLTHLDLSLNQLSGRLPQ 133
             L+NN  +G IP+E G L  L+ L +  N++ G +P  IGNL +L+ L    N +SG+LP+
Sbjct:   128 LNNNQFDGEIPVEIGKLVSLENLIIYNNRISGSLPVEIGNLLSLSQLVTYSNNISGQLPR 187

Query:   134 EVGXXXXXXXXXXXXXXXTGPIPSTLYHLNQLSNLYLAYNNLVGPLPKEVGNMKXXXXXX 193
              +G               +G +PS +     L  L LA N L G LPKE+G +K      
Sbjct:   188 SIGNLKRLTSFRAGQNMISGSLPSEIGGCESLVMLGLAQNQLSGELPKEIGMLKKLSQVI 247

Query:   194 XXXXXXTGPIPSTIGYLNLGGKLDLSHNRLDSPIPPTIGXXXXXXXXXXXXXXXXGLLPR 253
                   +G IP  I        L L  N+L  PIP  +G                G +PR
Sbjct:   248 LWENEFSGFIPREISNCTSLETLALYKNQLVGPIPKELGDLQSLEFLYLYRNGLNGTIPR 307

Query:   254 EVGNLKYLDSLSLDGNNLIGSIPPTIGYLTNLTSLNLGYNQLSSSIPPELMNCSQLQNLV 313
             E+GNL Y   +    N L G IP  +G +  L  L L  NQL+ +IP EL     L  L 
Sbjct:   308 EIGNLSYAIEIDFSENALTGEIPLELGNIEGLELLYLFENQLTGTIPVELSTLKNLSKLD 367

Query:   314 LSHNTLSGIVPPEIGNLTHLRQLDLSHNFINGTIPSQLGYIPNISAVDLSKNNLSGVVPA 373
             LS N L+G +P     L  L  L L  N ++GTIP +LG+  ++  +D+S N+LSG +P+
Sbjct:   368 LSINALTGPIPLGFQYLRGLFMLQLFQNSLSGTIPPKLGWYSDLWVLDMSDNHLSGRIPS 427

Query:   374 SVRIIPKLIVSENNLELENSTSSENAP 400
              + +   +I+    L L  +  S N P
Sbjct:   428 YLCLHSNMII----LNLGTNNLSGNIP 450

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA;ISS

GO:0005524 "ATP binding" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM;IDA

GO:0006468 "protein phosphorylation" evidence=IEA;ISS

GO:0007169 "transmembrane receptor protein tyrosine kinase signaling pathway" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0002237 "response to molecule of bacterial origin" evidence=RCA

GO:0007165 "signal transduction" evidence=RCA

GO:0010103 "stomatal complex morphogenesis" evidence=RCA

GO:0048443 "stamen development" evidence=RCA

TAIR|locus:2120362 GSO1 "GASSHO1" [Arabidopsis thaliana (taxid:3702)]

 Score = 532 (192.3 bits), Expect = 4.9e-50, P = 4.9e-50
 Identities = 139/360 (38%), Positives = 182/360 (50%)

Query:    33 GRIPSEIGALSKLEELALPYNSLTGTIPAEIGSLRNLVELDLSNNILNGSIPLEFGNLKD 92
             G IP  IG L +L  L L  N L G +PA +G+   L  LDL++N L+GSIP  FG LK 
Sbjct:   470 GEIPPSIGRLKELNLLHLRQNELVGGLPASLGNCHQLNILDLADNQLSGSIPSSFGFLKG 529

Query:    93 LDALRLRGNKLDGLIPSSIGNLTNLTHLDLSLNQLSGRLPQEVGXXXXXXXXXXXXXXXT 152
             L+ L L  N L G +P S+ +L NLT ++LS N+L+G +    G                
Sbjct:   530 LEQLMLYNNSLQGNLPDSLISLRNLTRINLSHNRLNGTIHPLCGSSSYLSFDVTNNGFED 589

Query:   153 GPIPSTLYHLNQLSNLYLAYNNLVGPLPKEVGNMKXXXXXXXXXXXXTGPIPSTIGYLNL 212
               IP  L +   L  L L  N L G +P  +G ++            TG IP  +     
Sbjct:   590 -EIPLELGNSQNLDRLRLGKNQLTGKIPWTLGKIRELSLLDMSSNALTGTIPLQLVLCKK 648

Query:   213 GGKLDLSHNRLDSPIPPTIGXXXXXXXXXXXXXXXXGLLPREVGNLKYLDSLSLDGNNLI 272
                +DL++N L  PIPP +G                  LP E+ N   L  LSLDGN+L 
Sbjct:   649 LTHIDLNNNFLSGPIPPWLGKLSQLGELKLSSNQFVESLPTELFNCTKLLVLSLDGNSLN 708

Query:   273 GSIPPTIGYLTNLTSLNLGYNQLSSSIPPELMNCSQLQNLVLSHNTLSGIVPPEIGNLTH 332
             GSIP  IG L  L  LNL  NQ S S+P  +   S+L  L LS N+L+G +P EIG L  
Sbjct:   709 GSIPQEIGNLGALNVLNLDKNQFSGSLPQAMGKLSKLYELRLSRNSLTGEIPVEIGQLQD 768

Query:   333 LRQ-LDLSHNFINGTIPSQLGYIPNISAVDLSKNNLSGVVPASV---RIIPKLIVSENNL 388
             L+  LDLS+N   G IPS +G +  +  +DLS N L+G VP SV   + +  L VS NNL
Sbjct:   769 LQSALDLSYNNFTGDIPSTIGTLSKLETLDLSHNQLTGEVPGSVGDMKSLGYLNVSFNNL 828

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA;ISS

GO:0005524 "ATP binding" evidence=IEA;ISS

GO:0006468 "protein phosphorylation" evidence=IEA;ISS

GO:0007169 "transmembrane receptor protein tyrosine kinase signaling pathway" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0008544 "epidermis development" evidence=IGI

GO:0009790 "embryo development" evidence=IGI

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	408
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	2e-69
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	5e-67
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	2e-53
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	5e-47
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	2e-46
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	3e-16
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	5e-16
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	1e-15
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	4e-15
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	4e-15
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	6e-15
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	2e-14
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	1e-11
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	7e-11
COG4886	394	COG4886, COG4886, Leucine-rich repeat (LRR) protei	4e-10
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	6e-09
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	1e-08
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	1e-07
PRK15370	754	PRK15370, PRK15370, E3 ubiquitin-protein ligase Sl	8e-06
COG4886	394	COG4886, COG4886, Leucine-rich repeat (LRR) protei	4e-05
PLN03210	1153	PLN03210, PLN03210, Resistant to P	5e-05
COG4886	394	COG4886, COG4886, Leucine-rich repeat (LRR) protei	9e-05
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	1e-04
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	2e-04
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	3e-04
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	4e-04
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	7e-04
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	0.002
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	0.004
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	0.004

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score =  235 bits (601), Expect = 2e-69
 Identities = 148/353 (41%), Positives = 204/353 (57%), Gaps = 3/353 (0%)

Query: 18  FPNLESIIIPYTLLSGRIPSEIGALS-KLEELALPYNSLTGTIPAEIGSLRNLVELDLSN 76
            P +++I +    LSG IP +I   S  L  L L  N+ TG+IP   GS+ NL  LDLSN
Sbjct: 92  LPYIQTINLSNNQLSGPIPDDIFTTSSSLRYLNLSNNNFTGSIPR--GSIPNLETLDLSN 149

Query: 77  NILNGSIPLEFGNLKDLDALRLRGNKLDGLIPSSIGNLTNLTHLDLSLNQLSGRLPQEVG 136
           N+L+G IP + G+   L  L L GN L G IP+S+ NLT+L  L L+ NQL G++P+E+G
Sbjct: 150 NMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELG 209

Query: 137 NLKNLLSLFLDNNNLTGPIPSTLYHLNQLSNLYLAYNNLVGPLPKEVGNMKNLDSLLLNR 196
            +K+L  ++L  NNL+G IP  +  L  L++L L YNNL GP+P  +GN+KNL  L L +
Sbjct: 210 QMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQ 269

Query: 197 NSLTGPIPSTIGYLNLGGKLDLSHNRLDSPIPPTIGNLTNLTSLDLSSNQLSGLLPREVG 256
           N L+GPIP +I  L     LDLS N L   IP  +  L NL  L L SN  +G +P  + 
Sbjct: 270 NKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTGKIPVALT 329

Query: 257 NLKYLDSLSLDGNNLIGSIPPTIGYLTNLTSLNLGYNQLSSSIPPELMNCSQLQNLVLSH 316
           +L  L  L L  N   G IP  +G   NLT L+L  N L+  IP  L +   L  L+L  
Sbjct: 330 SLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFS 389

Query: 317 NTLSGIVPPEIGNLTHLRQLDLSHNFINGTIPSQLGYIPNISAVDLSKNNLSG 369
           N+L G +P  +G    LR++ L  N  +G +PS+   +P +  +D+S NNL G
Sbjct: 390 NSLEGEIPKSLGACRSLRRVRLQDNSFSGELPSEFTKLPLVYFLDISNNNLQG 442

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score =  228 bits (584), Expect = 5e-67
 Identities = 155/394 (39%), Positives = 211/394 (53%), Gaps = 26/394 (6%)

Query: 21  LESIIIPYTLLSGRIPSEIGALSKLEELALPYNSLTGTIPAEIGSLRNLVELDLSNNILN 80
           LE + +    L G+IP E+G +  L+ + L YN+L+G IP EIG L +L  LDL  N L 
Sbjct: 190 LEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLT 249

Query: 81  GSIPLEFGNLKDLDALRLRGNKLDGLIPSSIGNLTNLTHLDLSLNQLSGRLPQEVGNLKN 140
           G IP   GNLK+L  L L  NKL G IP SI +L  L  LDLS N LSG +P+ V  L+N
Sbjct: 250 GPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPELVIQLQN 309

Query: 141 LLSLFLDNNNLTGPIPSTLYHLNQLSNLYLAYNNLVGPLPKEVGNMKNLDSLLLNRNSLT 200
           L  L L +NN TG IP  L  L +L  L L  N   G +PK +G   NL  L L+ N+LT
Sbjct: 310 LEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLT 369

Query: 201 GPIPSTIGYLNLGGKLDLSHNRLDSPIPPTIGNLTNLTSLDLSSNQLSGLLPREVGNLKY 260
           G IP  +       KL L  N L+  IP ++G   +L  + L  N  SG LP E   L  
Sbjct: 370 GEIPEGLCSSGNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNSFSGELPSEFTKLPL 429

Query: 261 LDSLSLDGNNLIGSIP------PTIGYLT-----------------NLTSLNLGYNQLSS 297
           +  L +  NNL G I       P++  L+                  L +L+L  NQ S 
Sbjct: 430 VYFLDISNNNLQGRINSRKWDMPSLQMLSLARNKFFGGLPDSFGSKRLENLDLSRNQFSG 489

Query: 298 SIPPELMNCSQLQNLVLSHNTLSGIVPPEIGNLTHLRQLDLSHNFINGTIPSQLGYIPNI 357
           ++P +L + S+L  L LS N LSG +P E+ +   L  LDLSHN ++G IP+    +P +
Sbjct: 490 AVPRKLGSLSELMQLKLSENKLSGEIPDELSSCKKLVSLDLSHNQLSGQIPASFSEMPVL 549

Query: 358 SAVDLSKNNLSGVVPASVRIIPKLI---VSENNL 388
           S +DLS+N LSG +P ++  +  L+   +S N+L
Sbjct: 550 SQLDLSQNQLSGEIPKNLGNVESLVQVNISHNHL 583

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score =  190 bits (485), Expect = 2e-53
 Identities = 133/334 (39%), Positives = 185/334 (55%), Gaps = 3/334 (0%)

Query: 43  SKLEELALPYNSLTGTIPAEIGSLRNLVELDLSNNILNGSIPLE-FGNLKDLDALRLRGN 101
           S++  + L   +++G I + I  L  +  ++LSNN L+G IP + F     L  L L  N
Sbjct: 69  SRVVSIDLSGKNISGKISSAIFRLPYIQTINLSNNQLSGPIPDDIFTTSSSLRYLNLSNN 128

Query: 102 KLDGLIPSSIGNLTNLTHLDLSLNQLSGRLPQEVGNLKNLLSLFLDNNNLTGPIPSTLYH 161
              G IP   G++ NL  LDLS N LSG +P ++G+  +L  L L  N L G IP++L +
Sbjct: 129 NFTGSIPR--GSIPNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTN 186

Query: 162 LNQLSNLYLAYNNLVGPLPKEVGNMKNLDSLLLNRNSLTGPIPSTIGYLNLGGKLDLSHN 221
           L  L  L LA N LVG +P+E+G MK+L  + L  N+L+G IP  IG L     LDL +N
Sbjct: 187 LTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYN 246

Query: 222 RLDSPIPPTIGNLTNLTSLDLSSNQLSGLLPREVGNLKYLDSLSLDGNNLIGSIPPTIGY 281
            L  PIP ++GNL NL  L L  N+LSG +P  + +L+ L SL L  N+L G IP  +  
Sbjct: 247 NLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPELVIQ 306

Query: 282 LTNLTSLNLGYNQLSSSIPPELMNCSQLQNLVLSHNTLSGIVPPEIGNLTHLRQLDLSHN 341
           L NL  L+L  N  +  IP  L +  +LQ L L  N  SG +P  +G   +L  LDLS N
Sbjct: 307 LQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTN 366

Query: 342 FINGTIPSQLGYIPNISAVDLSKNNLSGVVPASV 375
            + G IP  L    N+  + L  N+L G +P S+
Sbjct: 367 NLTGEIPEGLCSSGNLFKLILFSNSLEGEIPKSL 400

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score =  172 bits (437), Expect = 5e-47
 Identities = 113/296 (38%), Positives = 158/296 (53%), Gaps = 27/296 (9%)

Query: 89  NLKDLDALRLRGNKLDGLIPSSIGNLTNLTHLDLSLNQLSGRLPQEVGNL-KNLLSLFLD 147
           N   + ++ L G  + G I S+I  L  +  ++LS NQLSG +P ++     +L  L L 
Sbjct: 67  NSSRVVSIDLSGKNISGKISSAIFRLPYIQTINLSNNQLSGPIPDDIFTTSSSLRYLNLS 126

Query: 148 NNNLTGPIPSTLYHLNQLSNLYLAYNNLVGPLPKEVGNMKNLDSLLLNRNSLTGPIPSTI 207
           NNN TG IP                           G++ NL++L L+ N L+G IP+ I
Sbjct: 127 NNNFTGSIPR--------------------------GSIPNLETLDLSNNMLSGEIPNDI 160

Query: 208 GYLNLGGKLDLSHNRLDSPIPPTIGNLTNLTSLDLSSNQLSGLLPREVGNLKYLDSLSLD 267
           G  +    LDL  N L   IP ++ NLT+L  L L+SNQL G +PRE+G +K L  + L 
Sbjct: 161 GSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLG 220

Query: 268 GNNLIGSIPPTIGYLTNLTSLNLGYNQLSSSIPPELMNCSQLQNLVLSHNTLSGIVPPEI 327
            NNL G IP  IG LT+L  L+L YN L+  IP  L N   LQ L L  N LSG +PP I
Sbjct: 221 YNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSI 280

Query: 328 GNLTHLRQLDLSHNFINGTIPSQLGYIPNISAVDLSKNNLSGVVPASVRIIPKLIV 383
            +L  L  LDLS N ++G IP  +  + N+  + L  NN +G +P ++  +P+L V
Sbjct: 281 FSLQKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTGKIPVALTSLPRLQV 336

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score =  170 bits (432), Expect = 2e-46
 Identities = 112/306 (36%), Positives = 156/306 (50%), Gaps = 1/306 (0%)

Query: 20  NLESIIIPYTLLSGRIPSEIGALSKLEELALPYNSLTGTIPAEIGSLRNLVELDLSNNIL 79
            L S+ +    LSG IP  +  L  LE L L  N+ TG IP  + SL  L  L L +N  
Sbjct: 285 KLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKF 344

Query: 80  NGSIPLEFGNLKDLDALRLRGNKLDGLIPSSIGNLTNLTHLDLSLNQLSGRLPQEVGNLK 139
           +G IP   G   +L  L L  N L G IP  + +  NL  L L  N L G +P+ +G  +
Sbjct: 345 SGEIPKNLGKHNNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSNSLEGEIPKSLGACR 404

Query: 140 NLLSLFLDNNNLTGPIPSTLYHLNQLSNLYLAYNNLVGPLPKEVGNMKNLDSLLLNRNSL 199
           +L  + L +N+ +G +PS    L  +  L ++ NNL G +     +M +L  L L RN  
Sbjct: 405 SLRRVRLQDNSFSGELPSEFTKLPLVYFLDISNNNLQGRINSRKWDMPSLQMLSLARNKF 464

Query: 200 TGPIPSTIGYLNLGGKLDLSHNRLDSPIPPTIGNLTNLTSLDLSSNQLSGLLPREVGNLK 259
            G +P + G   L   LDLS N+    +P  +G+L+ L  L LS N+LSG +P E+ + K
Sbjct: 465 FGGLPDSFGSKRL-ENLDLSRNQFSGAVPRKLGSLSELMQLKLSENKLSGEIPDELSSCK 523

Query: 260 YLDSLSLDGNNLIGSIPPTIGYLTNLTSLNLGYNQLSSSIPPELMNCSQLQNLVLSHNTL 319
            L SL L  N L G IP +   +  L+ L+L  NQLS  IP  L N   L  + +SHN L
Sbjct: 524 KLVSLDLSHNQLSGQIPASFSEMPVLSQLDLSQNQLSGEIPKNLGNVESLVQVNISHNHL 583

Query: 320 SGIVPP 325
            G +P 
Sbjct: 584 HGSLPS 589

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 80.7 bits (199), Expect = 3e-16
 Identities = 50/145 (34%), Positives = 79/145 (54%), Gaps = 3/145 (2%)

Query: 230 TIGNLTNLTSLDLSSNQLSGLLPREVGNLKYLDSLSLDGNNLIGSIPPTIGYLT-NLTSL 288
           T  N + + S+DLS   +SG +   +  L Y+ +++L  N L G IP  I   + +L  L
Sbjct: 64  TCNNSSRVVSIDLSGKNISGKISSAIFRLPYIQTINLSNNQLSGPIPDDIFTTSSSLRYL 123

Query: 289 NLGYNQLSSSIPPELMNCSQLQNLVLSHNTLSGIVPPEIGNLTHLRQLDLSHNFINGTIP 348
           NL  N  + SIP   +    L+ L LS+N LSG +P +IG+ + L+ LDL  N + G IP
Sbjct: 124 NLSNNNFTGSIPRGSIPN--LETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIP 181

Query: 349 SQLGYIPNISAVDLSKNNLSGVVPA 373
           + L  + ++  + L+ N L G +P 
Sbjct: 182 NSLTNLTSLEFLTLASNQLVGQIPR 206

Length = 968

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 79.5 bits (196), Expect = 5e-16
 Identities = 38/96 (39%), Positives = 58/96 (60%)

Query: 260 YLDSLSLDGNNLIGSIPPTIGYLTNLTSLNLGYNQLSSSIPPELMNCSQLQNLVLSHNTL 319
           ++D L LD   L G IP  I  L +L S+NL  N +  +IPP L + + L+ L LS+N+ 
Sbjct: 419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSF 478

Query: 320 SGIVPPEIGNLTHLRQLDLSHNFINGTIPSQLGYIP 355
           +G +P  +G LT LR L+L+ N ++G +P+ LG   
Sbjct: 479 NGSIPESLGQLTSLRILNLNGNSLSGRVPAALGGRL 514

Length = 623

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 78.7 bits (194), Expect = 1e-15
 Identities = 46/111 (41%), Positives = 62/111 (55%), Gaps = 3/111 (2%)

Query: 48  LALPYNSLTGTIPAEIGSLRNLVELDLSNNILNGSIPLEFGNLKDLDALRLRGNKLDGLI 107
           L L    L G IP +I  LR+L  ++LS N + G+IP   G++  L+ L L  N  +G I
Sbjct: 423 LGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSI 482

Query: 108 PSSIGNLTNLTHLDLSLNQLSGRLPQEVGN--LKNLLSLFLDNNNLTGPIP 156
           P S+G LT+L  L+L+ N LSGR+P  +G   L      F DN  L G IP
Sbjct: 483 PESLGQLTSLRILNLNGNSLSGRVPAALGGRLLHRASFNFTDNAGLCG-IP 532

Length = 623

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 76.8 bits (189), Expect = 4e-15
 Identities = 36/89 (40%), Positives = 58/89 (65%)

Query: 240 LDLSSNQLSGLLPREVGNLKYLDSLSLDGNNLIGSIPPTIGYLTNLTSLNLGYNQLSSSI 299
           L L +  L G +P ++  L++L S++L GN++ G+IPP++G +T+L  L+L YN  + SI
Sbjct: 423 LGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSI 482

Query: 300 PPELMNCSQLQNLVLSHNTLSGIVPPEIG 328
           P  L   + L+ L L+ N+LSG VP  +G
Sbjct: 483 PESLGQLTSLRILNLNGNSLSGRVPAALG 511

Length = 623

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 76.8 bits (189), Expect = 4e-15
 Identities = 36/92 (39%), Positives = 55/92 (59%)

Query: 189 LDSLLLNRNSLTGPIPSTIGYLNLGGKLDLSHNRLDSPIPPTIGNLTNLTSLDLSSNQLS 248
           +D L L+   L G IP+ I  L     ++LS N +   IPP++G++T+L  LDLS N  +
Sbjct: 420 IDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFN 479

Query: 249 GLLPREVGNLKYLDSLSLDGNNLIGSIPPTIG 280
           G +P  +G L  L  L+L+GN+L G +P  +G
Sbjct: 480 GSIPESLGQLTSLRILNLNGNSLSGRVPAALG 511

Length = 623

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 76.4 bits (188), Expect = 6e-15
 Identities = 37/82 (45%), Positives = 49/82 (59%)

Query: 31  LSGRIPSEIGALSKLEELALPYNSLTGTIPAEIGSLRNLVELDLSNNILNGSIPLEFGNL 90
           L G IP++I  L  L+ + L  NS+ G IP  +GS+ +L  LDLS N  NGSIP   G L
Sbjct: 430 LRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQL 489

Query: 91  KDLDALRLRGNKLDGLIPSSIG 112
             L  L L GN L G +P+++G
Sbjct: 490 TSLRILNLNGNSLSGRVPAALG 511

Length = 623

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 74.5 bits (183), Expect = 2e-14
 Identities = 36/88 (40%), Positives = 55/88 (62%)

Query: 72  LDLSNNILNGSIPLEFGNLKDLDALRLRGNKLDGLIPSSIGNLTNLTHLDLSLNQLSGRL 131
           L L N  L G IP +   L+ L ++ L GN + G IP S+G++T+L  LDLS N  +G +
Sbjct: 423 LGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSI 482

Query: 132 PQEVGNLKNLLSLFLDNNNLTGPIPSTL 159
           P+ +G L +L  L L+ N+L+G +P+ L
Sbjct: 483 PESLGQLTSLRILNLNGNSLSGRVPAAL 510

Length = 623

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 66.0 bits (161), Expect = 1e-11
 Identities = 35/113 (30%), Positives = 57/113 (50%), Gaps = 24/113 (21%)

Query: 144 LFLDNNNLTGPIPSTLYHLNQLSNLYLAYNNLVGPLPKEVGNMKNLDSLLLNRNSLTGPI 203
           L LDN  L G IP+ +  L  L ++ L+ N++ G +P  +G++ +L+ L           
Sbjct: 423 LGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVL----------- 471

Query: 204 PSTIGYLNLGGKLDLSHNRLDSPIPPTIGNLTNLTSLDLSSNQLSGLLPREVG 256
                        DLS+N  +  IP ++G LT+L  L+L+ N LSG +P  +G
Sbjct: 472 -------------DLSYNSFNGSIPESLGQLTSLRILNLNGNSLSGRVPAALG 511

Length = 623

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 63.7 bits (155), Expect = 7e-11
 Identities = 33/95 (34%), Positives = 54/95 (56%)

Query: 120 LDLSLNQLSGRLPQEVGNLKNLLSLFLDNNNLTGPIPSTLYHLNQLSNLYLAYNNLVGPL 179
           L L    L G +P ++  L++L S+ L  N++ G IP +L  +  L  L L+YN+  G +
Sbjct: 423 LGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSI 482

Query: 180 PKEVGNMKNLDSLLLNRNSLTGPIPSTIGYLNLGG 214
           P+ +G + +L  L LN NSL+G +P+ +G   L  
Sbjct: 483 PESLGQLTSLRILNLNGNSLSGRVPAALGGRLLHR 517

Length = 623

>gnl|CDD|227223 COG4886, COG4886, Leucine-rich repeat (LRR) protein [Function unknown]

 Score = 60.8 bits (147), Expect = 4e-10
 Identities = 87/237 (36%), Positives = 124/237 (52%), Gaps = 10/237 (4%)

Query: 62  EIGSLRNLVELDLSNNILNGSIPLEFGNLKDLDALRLRGNKLDGLIPSSIGNLTNLTHLD 121
           E+  L NL  LDL NN +    PL      +L  L L  NK+   +PS + NL NL +LD
Sbjct: 111 ELLELTNLTSLDLDNNNITDIPPLIGLLKSNLKELDLSDNKI-ESLPSPLRNLPNLKNLD 169

Query: 122 LSLNQLSGRLPQEVGNLKNLLSLFLDNNNLTGPIPSTLYHLNQLSNLYLAYNNLVGPLPK 181
           LS N LS  LP+ + NL NL +L L  N ++  +P  +  L+ L  L L+ N+++  L  
Sbjct: 170 LSFNDLS-DLPKLLSNLSNLNNLDLSGNKIS-DLPPEIELLSALEELDLSNNSII-ELLS 226

Query: 182 EVGNMKNLDSLLLNRNSLTGPIPSTIGYLNLGGKLDLSHNRLDSPIPPTIGNLTNLTSLD 241
            + N+KNL  L L+ N L   +P +IG L+    LDLS+N++ S    ++G+LTNL  LD
Sbjct: 227 SLSNLKNLSGLELSNNKLE-DLPESIGNLSNLETLDLSNNQISS--ISSLGSLTNLRELD 283

Query: 242 LSSNQLSGLLPREVGNLKYLDSLSLDGNNLIGSIPPTIGYLTNLTSLNLGYNQLSSS 298
           LS N LS  LP        L  L L  N L+      +   + L + N+  N  +SS
Sbjct: 284 LSGNSLSNALPL---IALLLLLLELLLNLLLTLKALELKLNSILLNNNILSNGETSS 337

Length = 394

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 57.5 bits (139), Expect = 6e-09
 Identities = 26/64 (40%), Positives = 39/64 (60%)

Query: 312 LVLSHNTLSGIVPPEIGNLTHLRQLDLSHNFINGTIPSQLGYIPNISAVDLSKNNLSGVV 371
           L L +  L G +P +I  L HL+ ++LS N I G IP  LG I ++  +DLS N+ +G +
Sbjct: 423 LGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSI 482

Query: 372 PASV 375
           P S+
Sbjct: 483 PESL 486

Length = 623

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 57.2 bits (138), Expect = 1e-08
 Identities = 35/96 (36%), Positives = 50/96 (52%)

Query: 15  FTCFPNLESIIIPYTLLSGRIPSEIGALSKLEELALPYNSLTGTIPAEIGSLRNLVELDL 74
                 L  + +    LSG IP E+ +  KL  L L +N L+G IPA    +  L +LDL
Sbjct: 495 LGSLSELMQLKLSENKLSGEIPDELSSCKKLVSLDLSHNQLSGQIPASFSEMPVLSQLDL 554

Query: 75  SNNILNGSIPLEFGNLKDLDALRLRGNKLDGLIPSS 110
           S N L+G IP   GN++ L  + +  N L G +PS+
Sbjct: 555 SQNQLSGEIPKNLGNVESLVQVNISHNHLHGSLPST 590

Length = 968

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 53.3 bits (128), Expect = 1e-07
 Identities = 27/68 (39%), Positives = 41/68 (60%)

Query: 21  LESIIIPYTLLSGRIPSEIGALSKLEELALPYNSLTGTIPAEIGSLRNLVELDLSNNILN 80
           L+SI +    + G IP  +G+++ LE L L YNS  G+IP  +G L +L  L+L+ N L+
Sbjct: 444 LQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNGNSLS 503

Query: 81  GSIPLEFG 88
           G +P   G
Sbjct: 504 GRVPAALG 511

Length = 623

>gnl|CDD|185268 PRK15370, PRK15370, E3 ubiquitin-protein ligase SlrP; Provisional

 Score = 47.8 bits (113), Expect = 8e-06
 Identities = 79/273 (28%), Positives = 120/273 (43%), Gaps = 42/273 (15%)

Query: 139 KNLLSLFLDNNNLTGPIPSTLYHLNQLSNLYLAYNNLVGPLPKEV-GNMKNLDSLLLNRN 197
            N   L L    LT  IP+      Q++ L L  N L   LP+ + GN+K L +      
Sbjct: 178 NNKTELRLKILGLT-TIPA--CIPEQITTLILDNNELKS-LPENLQGNIKTLYANSNQLT 233

Query: 198 SLTGPIPSTIGYLNLGGKLDLSHNRLDSPIPPTIGNLTNLTSLDLSSNQLSGLLPREVGN 257
           S+   +P TI       +++LS NR+ + +P  +   + L SLDL  N++S L       
Sbjct: 234 SIPATLPDTI------QEMELSINRI-TELPERLP--SALQSLDLFHNKISCLPENLPEE 284

Query: 258 LKYLDSLSLDGNNLIGSIPPTIGYLTNLTSLNLGYNQLSSSIPPELMNCSQLQNLVLSHN 317
           L+YL         L   +P  I   T+L   +     L  ++PP       L+ L    N
Sbjct: 285 LRYLSVYDNSIRTLPAHLPSGI---THLNVQSNSLTALPETLPP------GLKTLEAGEN 335

Query: 318 TLSGI---VPPEIGNLTHLRQLDLSHNFINGTIPSQLGYIPNISAVDLSKN---NLSGVV 371
            L+ +   +PPE      L+ LD+S N I   +P  L   P I+ +D+S+N   NL   +
Sbjct: 336 ALTSLPASLPPE------LQVLDVSKNQIT-VLPETLP--PTITTLDVSRNALTNLPENL 386

Query: 372 PASVRIIPKLIVSENNL-ELENSTSSENAPPPQ 403
           PA+++I   +  S NNL  L  S        PQ
Sbjct: 387 PAALQI---MQASRNNLVRLPESLPHFRGEGPQ 416

Length = 754

>gnl|CDD|227223 COG4886, COG4886, Leucine-rich repeat (LRR) protein [Function unknown]

 Score = 45.0 bits (106), Expect = 4e-05
 Identities = 70/219 (31%), Positives = 110/219 (50%), Gaps = 8/219 (3%)

Query: 179 LPKEVGNMKNLDSLLLNRNSLTGPIPSTIGYLNLGGKLDLSHNRLDSPIPPTIGNLT-NL 237
             + + N+  L SL LN N L   I S +  L     LDL +N + + IPP IG L  NL
Sbjct: 85  GSENLLNLLPLPSLDLNLNRLRSNI-SELLELTNLTSLDLDNNNI-TDIPPLIGLLKSNL 142

Query: 238 TSLDLSSNQLSGLLPREVGNLKYLDSLSLDGNNLIGSIPPTIGYLTNLTSLNLGYNQLSS 297
             LDLS N++   LP  + NL  L +L L  N+L   +P  +  L+NL +L+L  N++S 
Sbjct: 143 KELDLSDNKIE-SLPSPLRNLPNLKNLDLSFNDLS-DLPKLLSNLSNLNNLDLSGNKISD 200

Query: 298 SIPPELMNCSQLQNLVLSHNTLSGIVPPEIGNLTHLRQLDLSHNFINGTIPSQLGYIPNI 357
            +PPE+   S L+ L LS+N++   +   + NL +L  L+LS+N +   +P  +G + N+
Sbjct: 201 -LPPEIELLSALEELDLSNNSII-ELLSSLSNLKNLSGLELSNNKLE-DLPESIGNLSNL 257

Query: 358 SAVDLSKNNLSGVVPASVRIIPKLIVSENNLELENSTSS 396
             +DLS N +S +         + +    N         
Sbjct: 258 ETLDLSNNQISSISSLGSLTNLRELDLSGNSLSNALPLI 296

Length = 394

>gnl|CDD|215633 PLN03210, PLN03210, Resistant to P

 Score = 45.3 bits (107), Expect = 5e-05
 Identities = 72/278 (25%), Positives = 120/278 (43%), Gaps = 53/278 (19%)

Query: 91  KDLDALRLRGNKLDGLIPSSIGNLTNLTHLDLSLNQLSGRLPQEVGNLK---NLLSLFLD 147
           ++L  L+++G+KL+ L    + +LT L ++DL   + S  L +E+ +L    NL +L L 
Sbjct: 611 ENLVKLQMQGSKLEKLW-DGVHSLTGLRNIDL---RGSKNL-KEIPDLSMATNLETLKLS 665

Query: 148 NNNLTGPIPSTLYHLNQLSNLYLAYNNLVGPLPKEVGNMKNLDSLLLN---RNSLTGPIP 204
           + +    +PS++ +LN+L +L ++    +  LP  + N+K+L  L L+   R      I 
Sbjct: 666 DCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTGI-NLKSLYRLNLSGCSRLKSFPDIS 724

Query: 205 STIGYLNLGGKLDLSHNRLDSPIPPTIGNLTNLTSLDLSSNQLSG----LLPREVGNLKY 260
           + I +L+L      +     S +   + NL  L   ++ S +L      L P        
Sbjct: 725 TNISWLDLDET---AIEEFPSNLR--LENLDELILCEMKSEKLWERVQPLTPLMTMLSPS 779

Query: 261 LDSLSLDGNNLIGSIPPTIGYLTNLTSLNLGYNQLSSSIPPELMNCSQLQNLVLSHNTLS 320
           L  L L     +  +P +I  L  L  L             E+ NC  L+ L       +
Sbjct: 780 LTRLFLSDIPSLVELPSSIQNLHKLEHL-------------EIENCINLETLP------T 820

Query: 321 GIVPPEIGNLTHLRQLDLSHNFINGTIPSQLGYIPNIS 358
           GI      NL  L  LDLS         S+L   P+IS
Sbjct: 821 GI------NLESLESLDLSGC-------SRLRTFPDIS 845

syringae 6; Provisional. Length = 1153

>gnl|CDD|227223 COG4886, COG4886, Leucine-rich repeat (LRR) protein [Function unknown]

 Score = 43.8 bits (103), Expect = 9e-05
 Identities = 90/247 (36%), Positives = 132/247 (53%), Gaps = 11/247 (4%)

Query: 106 LIPSSIGNLTNLTHLDLSLNQLSGRLPQEVGNLKNLLSLFLDNNNLTGPIPSTLYHLNQL 165
           L+PSS+  L +L  L  S    S    + + NL  L SL L+ N L   I S L  L  L
Sbjct: 61  LLPSSLSRLLSLDLLSPSGIS-SLDGSENLLNLLPLPSLDLNLNRLRSNI-SELLELTNL 118

Query: 166 SNLYLAYNNLVGPLPKEVGNMK-NLDSLLLNRNSLTGPIPSTIGYLNLGGKLDLSHNRLD 224
           ++L L  NN +  +P  +G +K NL  L L+ N +   +PS +  L     LDLS N L 
Sbjct: 119 TSLDL-DNNNITDIPPLIGLLKSNLKELDLSDNKIES-LPSPLRNLPNLKNLDLSFNDLS 176

Query: 225 SPIPPTIGNLTNLTSLDLSSNQLSGLLPREVGNLKYLDSLSLDGNNLIGSIPPTIGYLTN 284
             +P  + NL+NL +LDLS N++S  LP E+  L  L+ L L  N++I  +  ++  L N
Sbjct: 177 D-LPKLLSNLSNLNNLDLSGNKIS-DLPPEIELLSALEELDLSNNSII-ELLSSLSNLKN 233

Query: 285 LTSLNLGYNQLSSSIPPELMNCSQLQNLVLSHNTLSGIVPPEIGNLTHLRQLDLSHNFIN 344
           L+ L L  N+L       + N S L+ L LS+N +S I    +G+LT+LR+LDLS N ++
Sbjct: 234 LSGLELSNNKLEDLPES-IGNLSNLETLDLSNNQISSI--SSLGSLTNLRELDLSGNSLS 290

Query: 345 GTIPSQL 351
             +P   
Sbjct: 291 NALPLIA 297

Length = 394

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 39.4 bits (93), Expect = 1e-04
 Identities = 23/59 (38%), Positives = 30/59 (50%)

Query: 93  LDALRLRGNKLDGLIPSSIGNLTNLTHLDLSLNQLSGRLPQEVGNLKNLLSLFLDNNNL 151
           L +L L  N+L  +   +   L NL  LDLS N L+   P+    L +L SL L  NNL
Sbjct: 2   LKSLDLSNNRLTVIPDGAFKGLPNLKVLDLSGNNLTSISPEAFSGLPSLRSLDLSGNNL 60

Length = 60

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 38.7 bits (91), Expect = 2e-04
 Identities = 26/57 (45%), Positives = 29/57 (50%)

Query: 215 KLDLSHNRLDSPIPPTIGNLTNLTSLDLSSNQLSGLLPREVGNLKYLDSLSLDGNNL 271
            LDLS+NRL          L NL  LDLS N L+ + P     L  L SL L GNNL
Sbjct: 4   SLDLSNNRLTVIPDGAFKGLPNLKVLDLSGNNLTSISPEAFSGLPSLRSLDLSGNNL 60

Length = 60

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 38.3 bits (90), Expect = 3e-04
 Identities = 26/60 (43%), Positives = 30/60 (50%)

Query: 68  NLVELDLSNNILNGSIPLEFGNLKDLDALRLRGNKLDGLIPSSIGNLTNLTHLDLSLNQL 127
           NL  LDLSNN L       F  L +L  L L GN L  + P +   L +L  LDLS N L
Sbjct: 1   NLKSLDLSNNRLTVIPDGAFKGLPNLKVLDLSGNNLTSISPEAFSGLPSLRSLDLSGNNL 60

Length = 60

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 37.9 bits (89), Expect = 4e-04
 Identities = 25/59 (42%), Positives = 30/59 (50%), Gaps = 2/59 (3%)

Query: 284 NLTSLNLGYNQLSSSIPPE-LMNCSQLQNLVLSHNTLSGIVPPEIGNLTHLRQLDLSHN 341
           NL SL+L  N+L+  IP         L+ L LS N L+ I P     L  LR LDLS N
Sbjct: 1   NLKSLDLSNNRLTV-IPDGAFKGLPNLKVLDLSGNNLTSISPEAFSGLPSLRSLDLSGN 58

Length = 60

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 37.1 bits (87), Expect = 7e-04
 Identities = 26/61 (42%), Positives = 31/61 (50%), Gaps = 2/61 (3%)

Query: 116 NLTHLDLSLNQLSGRLPQEV-GNLKNLLSLFLDNNNLTGPIPSTLYHLNQLSNLYLAYNN 174
           NL  LDLS N+L+  +P      L NL  L L  NNLT   P     L  L +L L+ NN
Sbjct: 1   NLKSLDLSNNRLT-VIPDGAFKGLPNLKVLDLSGNNLTSISPEAFSGLPSLRSLDLSGNN 59

Query: 175 L 175
           L
Sbjct: 60  L 60

Length = 60

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 36.0 bits (84), Expect = 0.002
 Identities = 25/60 (41%), Positives = 31/60 (51%)

Query: 236 NLTSLDLSSNQLSGLLPREVGNLKYLDSLSLDGNNLIGSIPPTIGYLTNLTSLNLGYNQL 295
           NL SLDLS+N+L+ +       L  L  L L GNNL    P     L +L SL+L  N L
Sbjct: 1   NLKSLDLSNNRLTVIPDGAFKGLPNLKVLDLSGNNLTSISPEAFSGLPSLRSLDLSGNNL 60

Length = 60

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 39.0 bits (91), Expect = 0.004
 Identities = 18/48 (37%), Positives = 27/48 (56%)

Query: 19  PNLESIIIPYTLLSGRIPSEIGALSKLEELALPYNSLTGTIPAEIGSL 66
            +LE + + Y   +G IP  +G L+ L  L L  NSL+G +PA +G  
Sbjct: 466 TSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNGNSLSGRVPAALGGR 513

Length = 623

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 35.2 bits (82), Expect = 0.004
 Identities = 20/57 (35%), Positives = 24/57 (42%)

Query: 261 LDSLSLDGNNLIGSIPPTIGYLTNLTSLNLGYNQLSSSIPPELMNCSQLQNLVLSHN 317
           L SL L  N L          L NL  L+L  N L+S  P        L++L LS N
Sbjct: 2   LKSLDLSNNRLTVIPDGAFKGLPNLKVLDLSGNNLTSISPEAFSGLPSLRSLDLSGN 58

Length = 60

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	408
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	100.0
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	100.0
KOG4194	873	consensus Membrane glycoprotein LIG-1 [Signal tran	100.0
KOG4194	873	consensus Membrane glycoprotein LIG-1 [Signal tran	100.0
KOG0444	1255	consensus Cytoskeletal regulator Flightless-I (con	99.94
KOG0444	1255	consensus Cytoskeletal regulator Flightless-I (con	99.94
PLN03210	1153	Resistant to P. syringae 6; Provisional	99.93
KOG0472	565	consensus Leucine-rich repeat protein [Function un	99.91
KOG0472	565	consensus Leucine-rich repeat protein [Function un	99.9
PLN03210	1153	Resistant to P. syringae 6; Provisional	99.9
KOG0618	1081	consensus Serine/threonine phosphatase 2C containi	99.87
KOG0618	1081	consensus Serine/threonine phosphatase 2C containi	99.87
KOG4237	498	consensus Extracellular matrix protein slit, conta	99.85
KOG4237	498	consensus Extracellular matrix protein slit, conta	99.83
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	99.75
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	99.73
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	99.7
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	99.68
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	99.61
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	99.57
KOG0617	264	consensus Ras suppressor protein (contains leucine	99.41
KOG0617	264	consensus Ras suppressor protein (contains leucine	99.4
KOG1909	382	consensus Ran GTPase-activating protein [RNA proce	99.27
KOG1909	382	consensus Ran GTPase-activating protein [RNA proce	99.2
KOG4658	889	consensus Apoptotic ATPase [Signal transduction me	99.19
KOG3207	505	consensus Beta-tubulin folding cofactor E [Posttra	99.19
KOG4658	889	consensus Apoptotic ATPase [Signal transduction me	99.11
KOG3207	505	consensus Beta-tubulin folding cofactor E [Posttra	99.06
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	99.06
KOG1259	490	consensus Nischarin, modulator of integrin alpha5	99.05
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	98.99
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	98.91
KOG1259	490	consensus Nischarin, modulator of integrin alpha5	98.85
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	98.84
PLN03150	623	hypothetical protein; Provisional	98.83
COG4886	394	Leucine-rich repeat (LRR) protein [Function unknow	98.81
KOG0532	722	consensus Leucine-rich repeat (LRR) protein, conta	98.79
COG4886	394	Leucine-rich repeat (LRR) protein [Function unknow	98.79
KOG4341	483	consensus F-box protein containing LRR [General fu	98.69
PLN03150	623	hypothetical protein; Provisional	98.67
KOG0532	722	consensus Leucine-rich repeat (LRR) protein, conta	98.67
KOG2120	419	consensus SCF ubiquitin ligase, Skp2 component [Po	98.66
KOG4341	483	consensus F-box protein containing LRR [General fu	98.66
KOG2120	419	consensus SCF ubiquitin ligase, Skp2 component [Po	98.58
KOG0531	414	consensus Protein phosphatase 1, regulatory subuni	98.46
KOG0531	414	consensus Protein phosphatase 1, regulatory subuni	98.43
KOG1859	1096	consensus Leucine-rich repeat proteins [General fu	98.43
KOG2982	418	consensus Uncharacterized conserved protein [Funct	98.39
PF13306	129	LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_	98.39
KOG2982	418	consensus Uncharacterized conserved protein [Funct	98.34
COG5238	388	RNA1 Ran GTPase-activating protein (RanGAP) involv	98.29
PF13306	129	LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_	98.18
KOG1859	1096	consensus Leucine-rich repeat proteins [General fu	98.05
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	97.95
KOG1644	233	consensus U2-associated snRNP A' protein [RNA proc	97.93
KOG3665	699	consensus ZYG-1-like serine/threonine protein kina	97.92
COG5238	388	RNA1 Ran GTPase-activating protein (RanGAP) involv	97.87
KOG1644	233	consensus U2-associated snRNP A' protein [RNA proc	97.86
PRK15386	426	type III secretion protein GogB; Provisional	97.82
PRK15386	426	type III secretion protein GogB; Provisional	97.77
KOG3665	699	consensus ZYG-1-like serine/threonine protein kina	97.66
KOG4579	177	consensus Leucine-rich repeat (LRR) protein associ	97.65
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	97.57
KOG1947	482	consensus Leucine rich repeat proteins, some prote	97.5
KOG4579	177	consensus Leucine-rich repeat (LRR) protein associ	97.48
KOG1947	482	consensus Leucine rich repeat proteins, some prote	97.4
KOG2739	260	consensus Leucine-rich acidic nuclear protein [Cel	97.13
KOG2739	260	consensus Leucine-rich acidic nuclear protein [Cel	97.0
KOG2123	388	consensus Uncharacterized conserved protein [Funct	96.89
KOG2123	388	consensus Uncharacterized conserved protein [Funct	96.65
PF00560	22	LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Le	96.24
KOG3864	221	consensus Uncharacterized conserved protein [Funct	95.97
KOG3864	221	consensus Uncharacterized conserved protein [Funct	94.5
PF00560	22	LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Le	94.47
PF13504	17	LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OO	91.82
smart00369	26	LRR_TYP Leucine-rich repeats, typical (most popula	90.76
smart00370	26	LRR Leucine-rich repeats, outliers.	90.76
KOG4308	478	consensus LRR-containing protein [Function unknown	85.36
PF13516	24	LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RI	85.18
KOG0473	326	consensus Leucine-rich repeat protein [Function un	82.65

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=100.00  E-value=3e-42  Score=354.45  Aligned_cols=392  Identities=37%  Similarity=0.542  Sum_probs=237.1

Q ss_pred             ccccCCCCCCcEEEcCCCccccccchhhccCCCCcEEeCCCCcCCCCCcccccCCCCCcEEeCCCceecccCcccccCCC
Q 037302           12 QLNFTCFPNLESIIIPYTLLSGRIPSEIGALSKLEELALPYNSLTGTIPAEIGSLRNLVELDLSNNILNGSIPLEFGNLK   91 (408)
Q Consensus        12 ~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~   91 (408)
                      ...+.++++|++|++++|.+.+..|..+..+++|++|++++|.+.+..+..+.++++|+.|++++|.+.+..|..+.+++
T Consensus       157 p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~  236 (968)
T PLN00113        157 PNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLT  236 (968)
T ss_pred             ChHHhcCCCCCEEECccCcccccCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEECcCCccCCcCChhHhcCC
Confidence            34566777777777777777666666677777777777777766655666666666777777766666655666666666


Q ss_pred             CCceeecCCccccccCCCcCCCCCCCCEEEcCCCeecccCcccccCCCCCceEeccCCcccCcCchhhccCCCCCEEEcC
Q 037302           92 DLDALRLRGNKLDGLIPSSIGNLTNLTHLDLSLNQLSGRLPQEVGNLKNLLSLFLDNNNLTGPIPSTLYHLNQLSNLYLA  171 (408)
Q Consensus        92 ~L~~L~l~~~~i~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~  171 (408)
                      +|++|++++|.+....|..+.++++|++|++++|.+.+..+..+..+++|++|++++|.+....+..+..+++|+.|+++
T Consensus       237 ~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~  316 (968)
T PLN00113        237 SLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPELVIQLQNLEILHLF  316 (968)
T ss_pred             CCCEEECcCceeccccChhHhCCCCCCEEECcCCeeeccCchhHhhccCcCEEECcCCeeccCCChhHcCCCCCcEEECC
Confidence            66666666666655555566666666666666666654555555556666666666655554455555555555555555


Q ss_pred             CCcCCCCCCccccCCCCCCEEEecCcccccccCcccccccccCeEEccCC------------------------cCCCCC
Q 037302          172 YNNLVGPLPKEVGNMKNLDSLLLNRNSLTGPIPSTIGYLNLGGKLDLSHN------------------------RLDSPI  227 (408)
Q Consensus       172 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~------------------------~~~~~~  227 (408)
                      +|.+....+..+..+++|+.|++++|.+.+..+..+..++.|+.+++++|                        .+....
T Consensus       317 ~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~  396 (968)
T PLN00113        317 SNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSNSLEGEI  396 (968)
T ss_pred             CCccCCcCChhHhcCCCCCEEECcCCCCcCcCChHHhCCCCCcEEECCCCeeEeeCChhHhCcCCCCEEECcCCEecccC
Confidence            55554444444555555555555555544444444444444444444444                        444444


Q ss_pred             CcccCCCCCccEEEccCCcccccCCccccCCCCCCEEeCCCCcccccCCccccCCCCCcEEeCCCCccccCCCcCCcCCC
Q 037302          228 PPTIGNLTNLTSLDLSSNQLSGLLPREVGNLKYLDSLSLDGNNLIGSIPPTIGYLTNLTSLNLGYNQLSSSIPPELMNCS  307 (408)
Q Consensus       228 ~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~  307 (408)
                      +..+..+++|+.|++++|.+.+..+..+..++.|+.|++++|.+....+..+..+++|++|++++|.+.+..+..+ ..+
T Consensus       397 p~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~p~~~-~~~  475 (968)
T PLN00113        397 PKSLGACRSLRRVRLQDNSFSGELPSEFTKLPLVYFLDISNNNLQGRINSRKWDMPSLQMLSLARNKFFGGLPDSF-GSK  475 (968)
T ss_pred             CHHHhCCCCCCEEECcCCEeeeECChhHhcCCCCCEEECcCCcccCccChhhccCCCCcEEECcCceeeeecCccc-ccc
Confidence            4444555566666666665554445555555566666666555554444444455556666665555543333322 235


Q ss_pred             CCcEEEcCCCccCCcCCcccccCCCccEEEcCCccccccCCcCCCCCCCccEEeCCCCccCCcCCccccC---CCeEEcc
Q 037302          308 QLQNLVLSHNTLSGIVPPEIGNLTHLRQLDLSHNFINGTIPSQLGYIPNISAVDLSKNNLSGVVPASVRI---IPKLIVS  384 (408)
Q Consensus       308 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~---l~~l~l~  384 (408)
                      +|+.|++++|++.+..+..+..+++|+.|++++|.+.+.+|..+..+++|+.|++++|++.+..|..+..   +++|+++
T Consensus       476 ~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls  555 (968)
T PLN00113        476 RLENLDLSRNQFSGAVPRKLGSLSELMQLKLSENKLSGEIPDELSSCKKLVSLDLSHNQLSGQIPASFSEMPVLSQLDLS  555 (968)
T ss_pred             cceEEECcCCccCCccChhhhhhhccCEEECcCCcceeeCChHHcCccCCCEEECCCCcccccCChhHhCcccCCEEECC
Confidence            6666666666666566666666677777777777776666666666777777777777777766665543   4477777


Q ss_pred             CCccCCCCCCCcCCCCCCCC
Q 037302          385 ENNLELENSTSSENAPPPQA  404 (408)
Q Consensus       385 ~n~~~~~~~~~~~~~~~~~~  404 (408)
                      +|+++|.+|..+.+++.|+.
T Consensus       556 ~N~l~~~~p~~l~~l~~L~~  575 (968)
T PLN00113        556 QNQLSGEIPKNLGNVESLVQ  575 (968)
T ss_pred             CCcccccCChhHhcCcccCE
Confidence            77777777777666665543

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=100.00  E-value=4.1e-42  Score=353.41  Aligned_cols=390  Identities=38%  Similarity=0.570  Sum_probs=320.5

Q ss_pred             CCCCCCcEEEcCCCccccccchhhccCCCCcEEeCCCCcCCCCCcccccCCCCCcEEeCCCceecccCcccccCCCCCce
Q 037302           16 TCFPNLESIIIPYTLLSGRIPSEIGALSKLEELALPYNSLTGTIPAEIGSLRNLVELDLSNNILNGSIPLEFGNLKDLDA   95 (408)
Q Consensus        16 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~   95 (408)
                      ..+++|++|++++|.+.+..|..+..+++|++|++++|.+.+..+..+.++++|++|++++|.+....|..+..+++|+.
T Consensus       137 ~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~  216 (968)
T PLN00113        137 GSIPNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKW  216 (968)
T ss_pred             cccCCCCEEECcCCcccccCChHHhcCCCCCEEECccCcccccCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccE
Confidence            46899999999999999899999999999999999999988888899999999999999999998888999999999999


Q ss_pred             eecCCccccccCCCcCCCCCCCCEEEcCCCeecccCcccccCCCCCceEeccCCcccCcCchhhccCCCCCEEEcCCCcC
Q 037302           96 LRLRGNKLDGLIPSSIGNLTNLTHLDLSLNQLSGRLPQEVGNLKNLLSLFLDNNNLTGPIPSTLYHLNQLSNLYLAYNNL  175 (408)
Q Consensus        96 L~l~~~~i~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~  175 (408)
                      |++++|.+....|..+.++++|++|++++|.+....+..+..+++|++|++++|.+.+..+..+..+++|+.|++++|.+
T Consensus       217 L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l  296 (968)
T PLN00113        217 IYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSL  296 (968)
T ss_pred             EECcCCccCCcCChhHhcCCCCCEEECcCceeccccChhHhCCCCCCEEECcCCeeeccCchhHhhccCcCEEECcCCee
Confidence            99999998888888899999999999999999878888999999999999999999878888899999999999999998


Q ss_pred             CCCCCccccCCCCCCEEEecCcccccccCcccccccccCeEEccCCcCCCCCCcccCCCCCccEEEccCCcccccCCccc
Q 037302          176 VGPLPKEVGNMKNLDSLLLNRNSLTGPIPSTIGYLNLGGKLDLSHNRLDSPIPPTIGNLTNLTSLDLSSNQLSGLLPREV  255 (408)
Q Consensus       176 ~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~  255 (408)
                      ....+..+..+++|+.|++.+|.+.+..+..+..+++|+.+++++|.+....+..+..+++|+.|++++|.+.+..+..+
T Consensus       297 ~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~Ls~n~l~~~~p~~~  376 (968)
T PLN00113        297 SGEIPELVIQLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIPEGL  376 (968)
T ss_pred             ccCCChhHcCCCCCcEEECCCCccCCcCChhHhcCCCCCEEECcCCCCcCcCChHHhCCCCCcEEECCCCeeEeeCChhH
Confidence            87888889999999999999999887788888999999999999999987788888888899999999887765555555


Q ss_pred             cCCCCCCEEeCCCCcccccCCccccCCCCCcEEeCCCCccccCCC------------------------cCCcCCCCCcE
Q 037302          256 GNLKYLDSLSLDGNNLIGSIPPTIGYLTNLTSLNLGYNQLSSSIP------------------------PELMNCSQLQN  311 (408)
Q Consensus       256 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~------------------------~~~~~~~~L~~  311 (408)
                      ...++|+.|++.+|.+....+..+..+++|+.|++++|.+++..+                        ..+..+++|+.
T Consensus       377 ~~~~~L~~L~l~~n~l~~~~p~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~  456 (968)
T PLN00113        377 CSSGNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNSFSGELPSEFTKLPLVYFLDISNNNLQGRINSRKWDMPSLQM  456 (968)
T ss_pred             hCcCCCCEEECcCCEecccCCHHHhCCCCCCEEECcCCEeeeECChhHhcCCCCCEEECcCCcccCccChhhccCCCCcE
Confidence            555555555555555544444444455555555555555444333                        33444555555


Q ss_pred             EEcCCCccCCcCCcccccCCCccEEEcCCccccccCCcCCCCCCCccEEeCCCCccCCcCCcccc---CCCeEEccCCcc
Q 037302          312 LVLSHNTLSGIVPPEIGNLTHLRQLDLSHNFINGTIPSQLGYIPNISAVDLSKNNLSGVVPASVR---IIPKLIVSENNL  388 (408)
Q Consensus       312 L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~---~l~~l~l~~n~~  388 (408)
                      |++++|++.+..+..+ ..++|+.|++++|++++..|..+.++++|+.|++++|++.+..|+.+.   ++++|++++|++
T Consensus       457 L~L~~n~~~~~~p~~~-~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l  535 (968)
T PLN00113        457 LSLARNKFFGGLPDSF-GSKRLENLDLSRNQFSGAVPRKLGSLSELMQLKLSENKLSGEIPDELSSCKKLVSLDLSHNQL  535 (968)
T ss_pred             EECcCceeeeecCccc-ccccceEEECcCCccCCccChhhhhhhccCEEECcCCcceeeCChHHcCccCCCEEECCCCcc
Confidence            5555555544444333 346777888888888877888888888999999999999988887765   456999999999


Q ss_pred             CCCCCCCcCCCCCCCCCC
Q 037302          389 ELENSTSSENAPPPQAKP  406 (408)
Q Consensus       389 ~~~~~~~~~~~~~~~~~~  406 (408)
                      ++.+|..+.+++.|+.+-
T Consensus       536 ~~~~p~~~~~l~~L~~L~  553 (968)
T PLN00113        536 SGQIPASFSEMPVLSQLD  553 (968)
T ss_pred             cccCChhHhCcccCCEEE
Confidence            999999999888887543

>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]

Probab=100.00  E-value=5.8e-37  Score=273.17  Aligned_cols=352  Identities=24%  Similarity=0.246  Sum_probs=182.0

Q ss_pred             CcEEeCCCCcCCCCCcccccCCCCCcEEeCCCceecccCcccccCCCCCceeecCCccccccCCCcCCCCCCCCEEEcCC
Q 037302           45 LEELALPYNSLTGTIPAEIGSLRNLVELDLSNNILNGSIPLEFGNLKDLDALRLRGNKLDGLIPSSIGNLTNLTHLDLSL  124 (408)
Q Consensus        45 L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~l~~l~~L~~L~l~~  124 (408)
                      -+.|++++|++..+....|.++++|+.+.+.+|.+. ..|.......+|+.|+|.+|.|..+..+.+..++.|+.++++.
T Consensus        80 t~~LdlsnNkl~~id~~~f~nl~nLq~v~l~~N~Lt-~IP~f~~~sghl~~L~L~~N~I~sv~se~L~~l~alrslDLSr  158 (873)
T KOG4194|consen   80 TQTLDLSNNKLSHIDFEFFYNLPNLQEVNLNKNELT-RIPRFGHESGHLEKLDLRHNLISSVTSEELSALPALRSLDLSR  158 (873)
T ss_pred             eeeeeccccccccCcHHHHhcCCcceeeeeccchhh-hcccccccccceeEEeeeccccccccHHHHHhHhhhhhhhhhh
Confidence            344555555555444445555555555555555554 3444444444555555555555555555555555555555555


Q ss_pred             CeecccCcccccCCCCCceEeccCCcccCcCchhhccCCCCCEEEcCCCcCCCCCCccccCCCCCCEEEecCcccccccC
Q 037302          125 NQLSGRLPQEVGNLKNLLSLFLDNNNLTGPIPSTLYHLNQLSNLYLAYNNLVGPLPKEVGNMKNLDSLLLNRNSLTGPIP  204 (408)
Q Consensus       125 ~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~  204 (408)
                      |.+..+....|..-+++++|++++|.|+....+.|..+.+|..|.++.|++.......|..+++|+.|++..|.+...-.
T Consensus       159 N~is~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsrNrittLp~r~Fk~L~~L~~LdLnrN~irive~  238 (873)
T KOG4194|consen  159 NLISEIPKPSFPAKVNIKKLNLASNRITTLETGHFDSLNSLLTLKLSRNRITTLPQRSFKRLPKLESLDLNRNRIRIVEG  238 (873)
T ss_pred             chhhcccCCCCCCCCCceEEeeccccccccccccccccchheeeecccCcccccCHHHhhhcchhhhhhccccceeeehh
Confidence            55544433444444455555555555554444455555555555555555554444445555555555555555543333


Q ss_pred             cccccccccCeEEccCCcCCCCCCcccCCCCCccEEEccCCcccccCCccccCCCCCCEEeCCCCcccccCCccccCCCC
Q 037302          205 STIGYLNLGGKLDLSHNRLDSPIPPTIGNLTNLTSLDLSSNQLSGLLPREVGNLKYLDSLSLDGNNLIGSIPPTIGYLTN  284 (408)
Q Consensus       205 ~~~~~~~~L~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~  284 (408)
                      ..|.++++++.+.+..|.+.......|..+.++++|+++.|.+......++-++..|+.|+++++.+.......+..+++
T Consensus       239 ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~NaI~rih~d~Wsftqk  318 (873)
T KOG4194|consen  239 LTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRLQAVNEGWLFGLTSLEQLDLSYNAIQRIHIDSWSFTQK  318 (873)
T ss_pred             hhhcCchhhhhhhhhhcCcccccCcceeeecccceeecccchhhhhhcccccccchhhhhccchhhhheeecchhhhccc
Confidence            44555555555555555554444445555555555555555555444444445555555555555555444555555555


Q ss_pred             CcEEeCCCCccccCCCcCCcCCCCCcEEEcCCCccCCcCCcccccCCCccEEEcCCccccccC---CcCCCCCCCccEEe
Q 037302          285 LTSLNLGYNQLSSSIPPELMNCSQLQNLVLSHNTLSGIVPPEIGNLTHLRQLDLSHNFINGTI---PSQLGYIPNISAVD  361 (408)
Q Consensus       285 L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~---~~~~~~~~~L~~L~  361 (408)
                      |++|+++.|.++...+..|..+.+|++|+|+.|.++.+...+|..+++|++|++++|.+...+   ..+|.++++|+.|.
T Consensus       319 L~~LdLs~N~i~~l~~~sf~~L~~Le~LnLs~Nsi~~l~e~af~~lssL~~LdLr~N~ls~~IEDaa~~f~gl~~LrkL~  398 (873)
T KOG4194|consen  319 LKELDLSSNRITRLDEGSFRVLSQLEELNLSHNSIDHLAEGAFVGLSSLHKLDLRSNELSWCIEDAAVAFNGLPSLRKLR  398 (873)
T ss_pred             ceeEeccccccccCChhHHHHHHHhhhhcccccchHHHHhhHHHHhhhhhhhcCcCCeEEEEEecchhhhccchhhhhee
Confidence            555555555555444444555555555555555555454555555555555555555544321   12344455555555


Q ss_pred             CCCCccCCcCCccccC---CCeEEccCCccCCCCCCCcC
Q 037302          362 LSKNNLSGVVPASVRI---IPKLIVSENNLELENSTSSE  397 (408)
Q Consensus       362 l~~~~l~~~~~~~~~~---l~~l~l~~n~~~~~~~~~~~  397 (408)
                      +.||+++.+.-..|..   ++.|||.+|.|-...|.-|+
T Consensus       399 l~gNqlk~I~krAfsgl~~LE~LdL~~NaiaSIq~nAFe  437 (873)
T KOG4194|consen  399 LTGNQLKSIPKRAFSGLEALEHLDLGDNAIASIQPNAFE  437 (873)
T ss_pred             ecCceeeecchhhhccCcccceecCCCCcceeecccccc
Confidence            5555555444444332   33555555555444444443

>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]

Probab=100.00  E-value=3.2e-37  Score=274.79  Aligned_cols=357  Identities=24%  Similarity=0.253  Sum_probs=186.0

Q ss_pred             CCcEEEcCCCccccccchhhccCCCCcEEeCCCCcCCCCCcccccCCCCCcEEeCCCceecccCcccccCCCCCceeecC
Q 037302           20 NLESIIIPYTLLSGRIPSEIGALSKLEELALPYNSLTGTIPAEIGSLRNLVELDLSNNILNGSIPLEFGNLKDLDALRLR   99 (408)
Q Consensus        20 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~   99 (408)
                      .-+.|+++++.+....+..|..+++|+.+.+..|..+ ..|.......+|+.|+|.+|.|...-...+..++-|+.|+|+
T Consensus        79 ~t~~LdlsnNkl~~id~~~f~nl~nLq~v~l~~N~Lt-~IP~f~~~sghl~~L~L~~N~I~sv~se~L~~l~alrslDLS  157 (873)
T KOG4194|consen   79 QTQTLDLSNNKLSHIDFEFFYNLPNLQEVNLNKNELT-RIPRFGHESGHLEKLDLRHNLISSVTSEELSALPALRSLDLS  157 (873)
T ss_pred             ceeeeeccccccccCcHHHHhcCCcceeeeeccchhh-hcccccccccceeEEeeeccccccccHHHHHhHhhhhhhhhh
Confidence            3444555555555444555555555555555555544 233333334445555555555554444445555555555555


Q ss_pred             CccccccCCCcCCCCCCCCEEEcCCCeecccCcccccCCCCCceEeccCCcccCcCchhhccCCCCCEEEcCCCcCCCCC
Q 037302          100 GNKLDGLIPSSIGNLTNLTHLDLSLNQLSGRLPQEVGNLKNLLSLFLDNNNLTGPIPSTLYHLNQLSNLYLAYNNLVGPL  179 (408)
Q Consensus       100 ~~~i~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~  179 (408)
                      .|.|..+....|..-.++++|++.+|.+++.....|..+.+|.+|.++.|+++...+..|..+++|+.|++..|.+...-
T Consensus       158 rN~is~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsrNrittLp~r~Fk~L~~L~~LdLnrN~irive  237 (873)
T KOG4194|consen  158 RNLISEIPKPSFPAKVNIKKLNLASNRITTLETGHFDSLNSLLTLKLSRNRITTLPQRSFKRLPKLESLDLNRNRIRIVE  237 (873)
T ss_pred             hchhhcccCCCCCCCCCceEEeeccccccccccccccccchheeeecccCcccccCHHHhhhcchhhhhhccccceeeeh
Confidence            55555444444544455555555555555555555555555555555555555444444444555555555555544333


Q ss_pred             CccccCCCCCCEEEecCcccccccCcccccccccCeEEccCCcCCCCCCcccCCCCCccEEEccCCcccccCCccccCCC
Q 037302          180 PKEVGNMKNLDSLLLNRNSLTGPIPSTIGYLNLGGKLDLSHNRLDSPIPPTIGNLTNLTSLDLSSNQLSGLLPREVGNLK  259 (408)
Q Consensus       180 ~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~  259 (408)
                      ...|+.+++|+.|.+..|.+.......|-.+..+++++++.|++......++.+++.|+.|+++.|.+.......+..++
T Consensus       238 ~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~NaI~rih~d~Wsftq  317 (873)
T KOG4194|consen  238 GLTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRLQAVNEGWLFGLTSLEQLDLSYNAIQRIHIDSWSFTQ  317 (873)
T ss_pred             hhhhcCchhhhhhhhhhcCcccccCcceeeecccceeecccchhhhhhcccccccchhhhhccchhhhheeecchhhhcc
Confidence            33455555555555555555444444555555555555555555544445555555555555555555544444455555


Q ss_pred             CCCEEeCCCCcccccCCccccCCCCCcEEeCCCCccccCCCcCCcCCCCCcEEEcCCCccCCc---CCcccccCCCccEE
Q 037302          260 YLDSLSLDGNNLIGSIPPTIGYLTNLTSLNLGYNQLSSSIPPELMNCSQLQNLVLSHNTLSGI---VPPEIGNLTHLRQL  336 (408)
Q Consensus       260 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~---~~~~~~~~~~L~~L  336 (408)
                      +|++|+++.+.+....+..+..+..|++|.++.|.++......|..+.+|++|+|++|.+...   ...+|.++++|+.|
T Consensus       318 kL~~LdLs~N~i~~l~~~sf~~L~~Le~LnLs~Nsi~~l~e~af~~lssL~~LdLr~N~ls~~IEDaa~~f~gl~~LrkL  397 (873)
T KOG4194|consen  318 KLKELDLSSNRITRLDEGSFRVLSQLEELNLSHNSIDHLAEGAFVGLSSLHKLDLRSNELSWCIEDAAVAFNGLPSLRKL  397 (873)
T ss_pred             cceeEeccccccccCChhHHHHHHHhhhhcccccchHHHHhhHHHHhhhhhhhcCcCCeEEEEEecchhhhccchhhhhe
Confidence            555555555555544444555555555555555555544444455555555555555543211   22344455555555


Q ss_pred             EcCCccccccCCcCCCCCCCccEEeCCCCccCCcCCccccC
Q 037302          337 DLSHNFINGTIPSQLGYIPNISAVDLSKNNLSGVVPASVRI  377 (408)
Q Consensus       337 ~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~  377 (408)
                      ++.||++......+|.++++|+.|++.+|.+..+-|..|..
T Consensus       398 ~l~gNqlk~I~krAfsgl~~LE~LdL~~NaiaSIq~nAFe~  438 (873)
T KOG4194|consen  398 RLTGNQLKSIPKRAFSGLEALEHLDLGDNAIASIQPNAFEP  438 (873)
T ss_pred             eecCceeeecchhhhccCcccceecCCCCcceeeccccccc
Confidence            55555555444445555555555555555555555555443

>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]

Probab=99.94  E-value=1.6e-29  Score=227.98  Aligned_cols=346  Identities=29%  Similarity=0.424  Sum_probs=225.7

Q ss_pred             CCCcEEEcCCCcccc-ccchhhccCCCCcEEeCCCCcCCCCCcccccCCC-----------------------CCcEEeC
Q 037302           19 PNLESIIIPYTLLSG-RIPSEIGALSKLEELALPYNSLTGTIPAEIGSLR-----------------------NLVELDL   74 (408)
Q Consensus        19 ~~L~~L~l~~~~~~~-~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~-----------------------~L~~L~l   74 (408)
                      |-.+-+++++++++| ..|.....+++++.|.+...++. ..|..++.+.                       .|+.+++
T Consensus         7 pFVrGvDfsgNDFsg~~FP~~v~qMt~~~WLkLnrt~L~-~vPeEL~~lqkLEHLs~~HN~L~~vhGELs~Lp~LRsv~~   85 (1255)
T KOG0444|consen    7 PFVRGVDFSGNDFSGDRFPHDVEQMTQMTWLKLNRTKLE-QVPEELSRLQKLEHLSMAHNQLISVHGELSDLPRLRSVIV   85 (1255)
T ss_pred             ceeecccccCCcCCCCcCchhHHHhhheeEEEechhhhh-hChHHHHHHhhhhhhhhhhhhhHhhhhhhccchhhHHHhh
Confidence            445555666666653 34455555555555555554443 3444444444                       4444444


Q ss_pred             CCceecc-cCcccccCCCCCceeecCCccccccCCCcCCCCCCCCEEEcCCCeecccCcccccCCCCCceEeccCCcccC
Q 037302           75 SNNILNG-SIPLEFGNLKDLDALRLRGNKLDGLIPSSIGNLTNLTHLDLSLNQLSGRLPQEVGNLKNLLSLFLDNNNLTG  153 (408)
Q Consensus        75 ~~~~~~~-~~~~~~~~l~~L~~L~l~~~~i~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~  153 (408)
                      ..|++.. -.|..+-.+..|..|+++.|++. ..|..++...++-+|++++|.+.++....+.++..|-.|+++.|++. 
T Consensus        86 R~N~LKnsGiP~diF~l~dLt~lDLShNqL~-EvP~~LE~AKn~iVLNLS~N~IetIPn~lfinLtDLLfLDLS~NrLe-  163 (1255)
T KOG0444|consen   86 RDNNLKNSGIPTDIFRLKDLTILDLSHNQLR-EVPTNLEYAKNSIVLNLSYNNIETIPNSLFINLTDLLFLDLSNNRLE-  163 (1255)
T ss_pred             hccccccCCCCchhcccccceeeecchhhhh-hcchhhhhhcCcEEEEcccCccccCCchHHHhhHhHhhhccccchhh-
Confidence            4444331 23333445555666666666554 33444555566666666666665444445556666666666666665 


Q ss_pred             cCchhhccCCCCCEEEcCCCcCCCCCCccccCCCCCCEEEecCcccc-cccCcccccccccCeEEccCCcCCCCCCcccC
Q 037302          154 PIPSTLYHLNQLSNLYLAYNNLVGPLPKEVGNMKNLDSLLLNRNSLT-GPIPSTIGYLNLGGKLDLSHNRLDSPIPPTIG  232 (408)
Q Consensus       154 ~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~-~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~l~  232 (408)
                      .++..+..+..|++|.+++|++.......+..+.+|+.|.+++.+-+ ..++..+..+.+|..++++.|.+. ..|+.+.
T Consensus       164 ~LPPQ~RRL~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N~Lp-~vPecly  242 (1255)
T KOG0444|consen  164 MLPPQIRRLSMLQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSENNLP-IVPECLY  242 (1255)
T ss_pred             hcCHHHHHHhhhhhhhcCCChhhHHHHhcCccchhhhhhhcccccchhhcCCCchhhhhhhhhccccccCCC-cchHHHh
Confidence            55566666677777777777665433334455566666666665432 245666777777778888877775 5677777


Q ss_pred             CCCCccEEEccCCcccccCCccccCCCCCCEEeCCCCcccccCCccccCCCCCcEEeCCCCccc-cCCCcCCcCCCCCcE
Q 037302          233 NLTNLTSLDLSSNQLSGLLPREVGNLKYLDSLSLDGNNLIGSIPPTIGYLTNLTSLNLGYNQLS-SSIPPELMNCSQLQN  311 (408)
Q Consensus       233 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~-~~~~~~~~~~~~L~~  311 (408)
                      .+++|+.|++++|.++ ..........+|++|+++++.++ ..+.++..+++|+.|...+|.++ +.+|..++.+.+|+.
T Consensus       243 ~l~~LrrLNLS~N~it-eL~~~~~~W~~lEtLNlSrNQLt-~LP~avcKL~kL~kLy~n~NkL~FeGiPSGIGKL~~Lev  320 (1255)
T KOG0444|consen  243 KLRNLRRLNLSGNKIT-ELNMTEGEWENLETLNLSRNQLT-VLPDAVCKLTKLTKLYANNNKLTFEGIPSGIGKLIQLEV  320 (1255)
T ss_pred             hhhhhheeccCcCcee-eeeccHHHHhhhhhhccccchhc-cchHHHhhhHHHHHHHhccCcccccCCccchhhhhhhHH
Confidence            7888888888888777 33444555677888888888877 56777778888888888887754 246677778888888


Q ss_pred             EEcCCCccCCcCCcccccCCCccEEEcCCccccccCCcCCCCCCCccEEeCCCCccCCcCC
Q 037302          312 LVLSHNTLSGIVPPEIGNLTHLRQLDLSHNFINGTIPSQLGYIPNISAVDLSKNNLSGVVP  372 (408)
Q Consensus       312 L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~  372 (408)
                      +...+|++. ..++.++.|+.|+.|.++.|++. .+|+++.-++.|+.|++..|+-.-.+|
T Consensus       321 f~aanN~LE-lVPEglcRC~kL~kL~L~~NrLi-TLPeaIHlL~~l~vLDlreNpnLVMPP  379 (1255)
T KOG0444|consen  321 FHAANNKLE-LVPEGLCRCVKLQKLKLDHNRLI-TLPEAIHLLPDLKVLDLRENPNLVMPP  379 (1255)
T ss_pred             HHhhccccc-cCchhhhhhHHHHHhccccccee-echhhhhhcCCcceeeccCCcCccCCC
Confidence            888888876 77888888888888888888887 778888888888888888887665555

>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]

Probab=99.94  E-value=2.5e-29  Score=226.64  Aligned_cols=341  Identities=31%  Similarity=0.406  Sum_probs=277.7

Q ss_pred             cCCCCCCcEEEcCCCccccccchhhccCCCCcEEeCCCCcCC-CCCcccccCCCCCcEEeCCCceecccCcccccCCCCC
Q 037302           15 FTCFPNLESIIIPYTLLSGRIPSEIGALSKLEELALPYNSLT-GTIPAEIGSLRNLVELDLSNNILNGSIPLEFGNLKDL   93 (408)
Q Consensus        15 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~-~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L   93 (408)
                      ++++.+|+.|.+..+.+. .+...++.++.||.+.+..|++. ..+|..+..+..|.+|++++|++. ..|..+.+..++
T Consensus        51 L~~lqkLEHLs~~HN~L~-~vhGELs~Lp~LRsv~~R~N~LKnsGiP~diF~l~dLt~lDLShNqL~-EvP~~LE~AKn~  128 (1255)
T KOG0444|consen   51 LSRLQKLEHLSMAHNQLI-SVHGELSDLPRLRSVIVRDNNLKNSGIPTDIFRLKDLTILDLSHNQLR-EVPTNLEYAKNS  128 (1255)
T ss_pred             HHHHhhhhhhhhhhhhhH-hhhhhhccchhhHHHhhhccccccCCCCchhcccccceeeecchhhhh-hcchhhhhhcCc
Confidence            345556666666666655 33445667777777777777654 356778889999999999999998 889999999999


Q ss_pred             ceeecCCccccccCCCcCCCCCCCCEEEcCCCeecccCcccccCCCCCceEeccCCcccCcCchhhccCCCCCEEEcCCC
Q 037302           94 DALRLRGNKLDGLIPSSIGNLTNLTHLDLSLNQLSGRLPQEVGNLKNLLSLFLDNNNLTGPIPSTLYHLNQLSNLYLAYN  173 (408)
Q Consensus        94 ~~L~l~~~~i~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~  173 (408)
                      -.|+++.|+|..++...|-+++.|-.|++++|++. .+|..+..+..|++|.+++|.+.......+..+++|+.|.+++.
T Consensus       129 iVLNLS~N~IetIPn~lfinLtDLLfLDLS~NrLe-~LPPQ~RRL~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~T  207 (1255)
T KOG0444|consen  129 IVLNLSYNNIETIPNSLFINLTDLLFLDLSNNRLE-MLPPQIRRLSMLQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNT  207 (1255)
T ss_pred             EEEEcccCccccCCchHHHhhHhHhhhccccchhh-hcCHHHHHHhhhhhhhcCCChhhHHHHhcCccchhhhhhhcccc
Confidence            99999999999888888889999999999999998 66777888999999999999876444445666788888999886


Q ss_pred             cC-CCCCCccccCCCCCCEEEecCcccccccCcccccccccCeEEccCCcCCCCCCcccCCCCCccEEEccCCcccccCC
Q 037302          174 NL-VGPLPKEVGNMKNLDSLLLNRNSLTGPIPSTIGYLNLGGKLDLSHNRLDSPIPPTIGNLTNLTSLDLSSNQLSGLLP  252 (408)
Q Consensus       174 ~~-~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~  252 (408)
                      .- ...+|..+..+.+|..++++.|.+. ..+..+-..+.|..|++++|.++.. ........+|+.|+++.|+++ ..+
T Consensus       208 qRTl~N~Ptsld~l~NL~dvDlS~N~Lp-~vPecly~l~~LrrLNLS~N~iteL-~~~~~~W~~lEtLNlSrNQLt-~LP  284 (1255)
T KOG0444|consen  208 QRTLDNIPTSLDDLHNLRDVDLSENNLP-IVPECLYKLRNLRRLNLSGNKITEL-NMTEGEWENLETLNLSRNQLT-VLP  284 (1255)
T ss_pred             cchhhcCCCchhhhhhhhhccccccCCC-cchHHHhhhhhhheeccCcCceeee-eccHHHHhhhhhhccccchhc-cch
Confidence            53 3457778889999999999999876 5677888899999999999998753 223444578999999999998 788


Q ss_pred             ccccCCCCCCEEeCCCCcccc-cCCccccCCCCCcEEeCCCCccccCCCcCCcCCCCCcEEEcCCCccCCcCCcccccCC
Q 037302          253 REVGNLKYLDSLSLDGNNLIG-SIPPTIGYLTNLTSLNLGYNQLSSSIPPELMNCSQLQNLVLSHNTLSGIVPPEIGNLT  331 (408)
Q Consensus       253 ~~~~~~~~L~~L~l~~~~~~~-~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~  331 (408)
                      .+++.++.|+.|.+.++++.- .++..++.+..|+++...+|.+. ..|..+.+|+.|+.|.++.|++. ..++++.-++
T Consensus       285 ~avcKL~kL~kLy~n~NkL~FeGiPSGIGKL~~Levf~aanN~LE-lVPEglcRC~kL~kL~L~~NrLi-TLPeaIHlL~  362 (1255)
T KOG0444|consen  285 DAVCKLTKLTKLYANNNKLTFEGIPSGIGKLIQLEVFHAANNKLE-LVPEGLCRCVKLQKLKLDHNRLI-TLPEAIHLLP  362 (1255)
T ss_pred             HHHhhhHHHHHHHhccCcccccCCccchhhhhhhHHHHhhccccc-cCchhhhhhHHHHHhccccccee-echhhhhhcC
Confidence            889999999999999998763 37888999999999999999988 88999999999999999999976 6789999999


Q ss_pred             CccEEEcCCccccccCCcCCCCCCCccEEeCC
Q 037302          332 HLRQLDLSHNFINGTIPSQLGYIPNISAVDLS  363 (408)
Q Consensus       332 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~  363 (408)
                      .|+.|++..|+-.-..|..-..-++++.-+++
T Consensus       363 ~l~vLDlreNpnLVMPPKP~da~~~lefYNID  394 (1255)
T KOG0444|consen  363 DLKVLDLRENPNLVMPPKPNDARKKLEFYNID  394 (1255)
T ss_pred             CcceeeccCCcCccCCCCcchhhhcceeeecc
Confidence            99999999997764444332223456554444

>PLN03210 Resistant to P

Probab=99.93  E-value=8.5e-24  Score=218.57  Aligned_cols=343  Identities=23%  Similarity=0.262  Sum_probs=254.4

Q ss_pred             cccccccCCCCCCcEEEcCCCc------cccccchhhccCC-CCcEEeCCCCcCCCCCcccccCCCCCcEEeCCCceecc
Q 037302            9 ELSQLNFTCFPNLESIIIPYTL------LSGRIPSEIGALS-KLEELALPYNSLTGTIPAEIGSLRNLVELDLSNNILNG   81 (408)
Q Consensus         9 ~~~~~~~~~~~~L~~L~l~~~~------~~~~~~~~~~~~~-~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~   81 (408)
                      .++..+|.+|++|+.|.+....      ....+|..+..++ +|+.|.+.++.+. .+|..| ...+|+.|++.++.+. 
T Consensus       548 ~i~~~aF~~m~~L~~L~~~~~~~~~~~~~~~~lp~~~~~lp~~Lr~L~~~~~~l~-~lP~~f-~~~~L~~L~L~~s~l~-  624 (1153)
T PLN03210        548 HIHENAFKGMRNLLFLKFYTKKWDQKKEVRWHLPEGFDYLPPKLRLLRWDKYPLR-CMPSNF-RPENLVKLQMQGSKLE-  624 (1153)
T ss_pred             eecHHHHhcCccccEEEEecccccccccceeecCcchhhcCcccEEEEecCCCCC-CCCCcC-CccCCcEEECcCcccc-
Confidence            4667789999999999996543      2234566666664 5999999998776 556555 5689999999999887 


Q ss_pred             cCcccccCCCCCceeecCCccccccCCCcCCCCCCCCEEEcCCCeecccCcccccCCCCCceEeccCCcccCcCchhhcc
Q 037302           82 SIPLEFGNLKDLDALRLRGNKLDGLIPSSIGNLTNLTHLDLSLNQLSGRLPQEVGNLKNLLSLFLDNNNLTGPIPSTLYH  161 (408)
Q Consensus        82 ~~~~~~~~l~~L~~L~l~~~~i~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~  161 (408)
                      .++..+..+++|++++++++......| .+..+++|+.|++.+|......+..+..+++|+.|++++|.....++..+ .
T Consensus       625 ~L~~~~~~l~~Lk~L~Ls~~~~l~~ip-~ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~i-~  702 (1153)
T PLN03210        625 KLWDGVHSLTGLRNIDLRGSKNLKEIP-DLSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTGI-N  702 (1153)
T ss_pred             ccccccccCCCCCEEECCCCCCcCcCC-ccccCCcccEEEecCCCCccccchhhhccCCCCEEeCCCCCCcCccCCcC-C
Confidence            566677889999999999875332334 37788999999999986555678888899999999999875433444433 6


Q ss_pred             CCCCCEEEcCCCcCCCCCCccccCCCCCCEEEecCcccccccCcccccccccCeEEccCCcCCC-------CCCcccCCC
Q 037302          162 LNQLSNLYLAYNNLVGPLPKEVGNMKNLDSLLLNRNSLTGPIPSTIGYLNLGGKLDLSHNRLDS-------PIPPTIGNL  234 (408)
Q Consensus       162 ~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~-------~~~~~l~~~  234 (408)
                      +++|+.|++++|.....++.   ...+|+.|++.++.+.. ++..+ .+++|..|.+.++....       ..+.....+
T Consensus       703 l~sL~~L~Lsgc~~L~~~p~---~~~nL~~L~L~~n~i~~-lP~~~-~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~  777 (1153)
T PLN03210        703 LKSLYRLNLSGCSRLKSFPD---ISTNISWLDLDETAIEE-FPSNL-RLENLDELILCEMKSEKLWERVQPLTPLMTMLS  777 (1153)
T ss_pred             CCCCCEEeCCCCCCcccccc---ccCCcCeeecCCCcccc-ccccc-cccccccccccccchhhccccccccchhhhhcc
Confidence            88999999999865444432   24688999999988763 33333 46777777776543211       111122345


Q ss_pred             CCccEEEccCCcccccCCccccCCCCCCEEeCCCCcccccCCccccCCCCCcEEeCCCCccccCCCcCCcCCCCCcEEEc
Q 037302          235 TNLTSLDLSSNQLSGLLPREVGNLKYLDSLSLDGNNLIGSIPPTIGYLTNLTSLNLGYNQLSSSIPPELMNCSQLQNLVL  314 (408)
Q Consensus       235 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l  314 (408)
                      ++|+.|++++|......+..++.+++|+.|++.+|......+... .+++|+.|++++|......+.   ..++|+.|++
T Consensus       778 ~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~-~L~sL~~L~Ls~c~~L~~~p~---~~~nL~~L~L  853 (1153)
T PLN03210        778 PSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPTGI-NLESLESLDLSGCSRLRTFPD---ISTNISDLNL  853 (1153)
T ss_pred             ccchheeCCCCCCccccChhhhCCCCCCEEECCCCCCcCeeCCCC-CccccCEEECCCCCccccccc---cccccCEeEC
Confidence            789999999987665677778889999999999987554555444 688999999999865433332   2368999999


Q ss_pred             CCCccCCcCCcccccCCCccEEEcCCccccccCCcCCCCCCCccEEeCCCCc
Q 037302          315 SHNTLSGIVPPEIGNLTHLRQLDLSHNFINGTIPSQLGYIPNISAVDLSKNN  366 (408)
Q Consensus       315 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~  366 (408)
                      ++|.++ ..+..+..+++|+.|++++|.....+|..+..+++|+.+++++|.
T Consensus       854 s~n~i~-~iP~si~~l~~L~~L~L~~C~~L~~l~~~~~~L~~L~~L~l~~C~  904 (1153)
T PLN03210        854 SRTGIE-EVPWWIEKFSNLSFLDMNGCNNLQRVSLNISKLKHLETVDFSDCG  904 (1153)
T ss_pred             CCCCCc-cChHHHhcCCCCCEEECCCCCCcCccCcccccccCCCeeecCCCc
Confidence            999887 567778889999999999986665777777888999999999995

syringae 6; Provisional

>KOG0472 consensus Leucine-rich repeat protein [Function unknown]

Probab=99.91  E-value=1.2e-27  Score=204.90  Aligned_cols=382  Identities=30%  Similarity=0.411  Sum_probs=233.4

Q ss_pred             ccccCCCCCCcEEEcCCCccccccchhhccCCCCcEEeCCCCcCCCCCcccccCCCCCcEEeCCCceecc----------
Q 037302           12 QLNFTCFPNLESIIIPYTLLSGRIPSEIGALSKLEELALPYNSLTGTIPAEIGSLRNLVELDLSNNILNG----------   81 (408)
Q Consensus        12 ~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~----------   81 (408)
                      .....+++-+.+++++++... ..|.+++.+..++.++.+.+++. .+|..+..+..|+.++++.+....          
T Consensus        61 ~~dl~nL~~l~vl~~~~n~l~-~lp~aig~l~~l~~l~vs~n~ls-~lp~~i~s~~~l~~l~~s~n~~~el~~~i~~~~~  138 (565)
T KOG0472|consen   61 REDLKNLACLTVLNVHDNKLS-QLPAAIGELEALKSLNVSHNKLS-ELPEQIGSLISLVKLDCSSNELKELPDSIGRLLD  138 (565)
T ss_pred             cHhhhcccceeEEEeccchhh-hCCHHHHHHHHHHHhhcccchHh-hccHHHhhhhhhhhhhccccceeecCchHHHHhh
Confidence            345677788888888877766 44555665555666666655554 445555555555555555554441          


Q ss_pred             ------------cCcccccCCCCCceeecCCccccccCCCcCCCCCCCCEEEcCCCeecccCcccccCCCCCceEeccCC
Q 037302           82 ------------SIPLEFGNLKDLDALRLRGNKLDGLIPSSIGNLTNLTHLDLSLNQLSGRLPQEVGNLKNLLSLFLDNN  149 (408)
Q Consensus        82 ------------~~~~~~~~l~~L~~L~l~~~~i~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~  149 (408)
                                  ..|..+..+.++..+++.++++....++.+. ++.|++++...|.+. ..|..++.+.+|..|++..|
T Consensus       139 l~dl~~~~N~i~slp~~~~~~~~l~~l~~~~n~l~~l~~~~i~-m~~L~~ld~~~N~L~-tlP~~lg~l~~L~~LyL~~N  216 (565)
T KOG0472|consen  139 LEDLDATNNQISSLPEDMVNLSKLSKLDLEGNKLKALPENHIA-MKRLKHLDCNSNLLE-TLPPELGGLESLELLYLRRN  216 (565)
T ss_pred             hhhhhccccccccCchHHHHHHHHHHhhccccchhhCCHHHHH-HHHHHhcccchhhhh-cCChhhcchhhhHHHHhhhc
Confidence                        3344444444444455555444433333332 556666666666555 45555666666666666666


Q ss_pred             cccCcCchhhccCCCCCEEEcCCCcCCCCCCccccCCCCCCEEEecCcccccccCcccccccccCeEEccCCcCCCCCCc
Q 037302          150 NLTGPIPSTLYHLNQLSNLYLAYNNLVGPLPKEVGNMKNLDSLLLNRNSLTGPIPSTIGYLNLGGKLDLSHNRLDSPIPP  229 (408)
Q Consensus       150 ~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~  229 (408)
                      .+. ..+ .|.+|..|+++++..|.+.....+...+++++..|++++|.+. ..++.++-+.+|.+++++++.++. .+.
T Consensus       217 ki~-~lP-ef~gcs~L~Elh~g~N~i~~lpae~~~~L~~l~vLDLRdNklk-e~Pde~clLrsL~rLDlSNN~is~-Lp~  292 (565)
T KOG0472|consen  217 KIR-FLP-EFPGCSLLKELHVGENQIEMLPAEHLKHLNSLLVLDLRDNKLK-EVPDEICLLRSLERLDLSNNDISS-LPY  292 (565)
T ss_pred             ccc-cCC-CCCccHHHHHHHhcccHHHhhHHHHhcccccceeeeccccccc-cCchHHHHhhhhhhhcccCCcccc-CCc
Confidence            665 344 5666777777777666665332233446778888888888877 456677777888888888887763 556


Q ss_pred             ccCCCCCccEEEccCCccccc-------C-------------------------------Ccc---ccCCCCCCEEeCCC
Q 037302          230 TIGNLTNLTSLDLSSNQLSGL-------L-------------------------------PRE---VGNLKYLDSLSLDG  268 (408)
Q Consensus       230 ~l~~~~~L~~L~l~~~~~~~~-------~-------------------------------~~~---~~~~~~L~~L~l~~  268 (408)
                      .++++ +|+.|.+.|+.+...       .                               ...   .....+.+.|.+++
T Consensus       293 sLgnl-hL~~L~leGNPlrTiRr~ii~~gT~~vLKyLrs~~~~dglS~se~~~e~~~t~~~~~~~~~~~~i~tkiL~~s~  371 (565)
T KOG0472|consen  293 SLGNL-HLKFLALEGNPLRTIRREIISKGTQEVLKYLRSKIKDDGLSQSEGGTETAMTLPSESFPDIYAIITTKILDVSD  371 (565)
T ss_pred             ccccc-eeeehhhcCCchHHHHHHHHcccHHHHHHHHHHhhccCCCCCCcccccccCCCCCCcccchhhhhhhhhhcccc
Confidence            67776 788888777643210       0                               000   01112344455554


Q ss_pred             CcccccCCccccCC--CCCcEEeCCCCcccc-----------------------CCCcCCcCCCCCcEEEcCCCccCCcC
Q 037302          269 NNLIGSIPPTIGYL--TNLTSLNLGYNQLSS-----------------------SIPPELMNCSQLQNLVLSHNTLSGIV  323 (408)
Q Consensus       269 ~~~~~~~~~~~~~~--~~L~~L~l~~~~~~~-----------------------~~~~~~~~~~~L~~L~l~~~~~~~~~  323 (408)
                      -..+.++...|...  .-.+.++++.|++.+                       ..+..+.++++|..|++++|-+- -.
T Consensus       372 ~qlt~VPdEVfea~~~~~Vt~VnfskNqL~elPk~L~~lkelvT~l~lsnn~isfv~~~l~~l~kLt~L~L~NN~Ln-~L  450 (565)
T KOG0472|consen  372 KQLTLVPDEVFEAAKSEIVTSVNFSKNQLCELPKRLVELKELVTDLVLSNNKISFVPLELSQLQKLTFLDLSNNLLN-DL  450 (565)
T ss_pred             cccccCCHHHHHHhhhcceEEEecccchHhhhhhhhHHHHHHHHHHHhhcCccccchHHHHhhhcceeeecccchhh-hc
Confidence            44443322222211  124555666655432                       34445566788888999888776 45


Q ss_pred             CcccccCCCccEEEcCCccccccCCcCCCCCCCccEEeCCCCccCCcCCcccc---CCCeEEccCCccCCCCCCCcCCCC
Q 037302          324 PPEIGNLTHLRQLDLSHNFINGTIPSQLGYIPNISAVDLSKNNLSGVVPASVR---IIPKLIVSENNLELENSTSSENAP  400 (408)
Q Consensus       324 ~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~---~l~~l~l~~n~~~~~~~~~~~~~~  400 (408)
                      +..+..+..|+.++++.|.+. ..|.++.-...++.+..++||+..+.|..+.   ++.+||+.+|.+. .||-.+.|++
T Consensus       451 P~e~~~lv~Lq~LnlS~NrFr-~lP~~~y~lq~lEtllas~nqi~~vd~~~l~nm~nL~tLDL~nNdlq-~IPp~Lgnmt  528 (565)
T KOG0472|consen  451 PEEMGSLVRLQTLNLSFNRFR-MLPECLYELQTLETLLASNNQIGSVDPSGLKNMRNLTTLDLQNNDLQ-QIPPILGNMT  528 (565)
T ss_pred             chhhhhhhhhheecccccccc-cchHHHhhHHHHHHHHhccccccccChHHhhhhhhcceeccCCCchh-hCChhhcccc
Confidence            666677778889999888776 6676666666777788888888877766444   4448888888885 7787888888


Q ss_pred             CCCCC
Q 037302          401 PPQAK  405 (408)
Q Consensus       401 ~~~~~  405 (408)
                      +|.-+
T Consensus       529 nL~hL  533 (565)
T KOG0472|consen  529 NLRHL  533 (565)
T ss_pred             ceeEE
Confidence            76544

>KOG0472 consensus Leucine-rich repeat protein [Function unknown]

Probab=99.90  E-value=1.2e-27  Score=204.98  Aligned_cols=362  Identities=28%  Similarity=0.405  Sum_probs=277.4

Q ss_pred             cCCCCCCcEEEcCCCccccccchhhccCCCCcEEeCCCCcCCCCCcccccCCCCCcEEeCCCceecccCcccccCCCCCc
Q 037302           15 FTCFPNLESIIIPYTLLSGRIPSEIGALSKLEELALPYNSLTGTIPAEIGSLRNLVELDLSNNILNGSIPLEFGNLKDLD   94 (408)
Q Consensus        15 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~   94 (408)
                      ....+.++.++++.+.+. ..++.++.+..+..++..+|++. ..|.++..+.+|..+++.++.+....+..+ ++..|+
T Consensus       110 i~s~~~l~~l~~s~n~~~-el~~~i~~~~~l~dl~~~~N~i~-slp~~~~~~~~l~~l~~~~n~l~~l~~~~i-~m~~L~  186 (565)
T KOG0472|consen  110 IGSLISLVKLDCSSNELK-ELPDSIGRLLDLEDLDATNNQIS-SLPEDMVNLSKLSKLDLEGNKLKALPENHI-AMKRLK  186 (565)
T ss_pred             Hhhhhhhhhhhcccccee-ecCchHHHHhhhhhhhccccccc-cCchHHHHHHHHHHhhccccchhhCCHHHH-HHHHHH
Confidence            344577888888888777 66777888888999999888887 678888899999999999999884444444 489999


Q ss_pred             eeecCCccccccCCCcCCCCCCCCEEEcCCCeecccCcccccCCCCCceEeccCCcccCcCchhh-ccCCCCCEEEcCCC
Q 037302           95 ALRLRGNKLDGLIPSSIGNLTNLTHLDLSLNQLSGRLPQEVGNLKNLLSLFLDNNNLTGPIPSTL-YHLNQLSNLYLAYN  173 (408)
Q Consensus        95 ~L~l~~~~i~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~-~~~~~L~~L~l~~~  173 (408)
                      .++...|-++ ..|..++.+.+|+.|++..|++. ..| .|.++..|++++++.|.+. +++... .+++++..|++.+|
T Consensus       187 ~ld~~~N~L~-tlP~~lg~l~~L~~LyL~~Nki~-~lP-ef~gcs~L~Elh~g~N~i~-~lpae~~~~L~~l~vLDLRdN  262 (565)
T KOG0472|consen  187 HLDCNSNLLE-TLPPELGGLESLELLYLRRNKIR-FLP-EFPGCSLLKELHVGENQIE-MLPAEHLKHLNSLLVLDLRDN  262 (565)
T ss_pred             hcccchhhhh-cCChhhcchhhhHHHHhhhcccc-cCC-CCCccHHHHHHHhcccHHH-hhHHHHhcccccceeeecccc
Confidence            9999998777 55667999999999999999998 455 7999999999999999998 555544 47999999999999


Q ss_pred             cCCCCCCccccCCCCCCEEEecCcccccccCcccccccccCeEEccCCcCCC----------------------------
Q 037302          174 NLVGPLPKEVGNMKNLDSLLLNRNSLTGPIPSTIGYLNLGGKLDLSHNRLDS----------------------------  225 (408)
Q Consensus       174 ~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~----------------------------  225 (408)
                      ++.+ .|..+..+.+|+.|++++|.++ ..+..++.+ +|+.+.+.++++..                            
T Consensus       263 klke-~Pde~clLrsL~rLDlSNN~is-~Lp~sLgnl-hL~~L~leGNPlrTiRr~ii~~gT~~vLKyLrs~~~~dglS~  339 (565)
T KOG0472|consen  263 KLKE-VPDEICLLRSLERLDLSNNDIS-SLPYSLGNL-HLKFLALEGNPLRTIRREIISKGTQEVLKYLRSKIKDDGLSQ  339 (565)
T ss_pred             cccc-CchHHHHhhhhhhhcccCCccc-cCCcccccc-eeeehhhcCCchHHHHHHHHcccHHHHHHHHHHhhccCCCCC
Confidence            9874 5666788999999999999998 567788888 89999888875420                            


Q ss_pred             ------CC---C----cccCCCCCccEEEccCCcccccCCccccCC--CCCCEEeCCCCccc------------------
Q 037302          226 ------PI---P----PTIGNLTNLTSLDLSSNQLSGLLPREVGNL--KYLDSLSLDGNNLI------------------  272 (408)
Q Consensus       226 ------~~---~----~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~--~~L~~L~l~~~~~~------------------  272 (408)
                            ..   +    .......+.+.|++++-+++....+.|...  .-....+++++.+.                  
T Consensus       340 se~~~e~~~t~~~~~~~~~~~~i~tkiL~~s~~qlt~VPdEVfea~~~~~Vt~VnfskNqL~elPk~L~~lkelvT~l~l  419 (565)
T KOG0472|consen  340 SEGGTETAMTLPSESFPDIYAIITTKILDVSDKQLTLVPDEVFEAAKSEIVTSVNFSKNQLCELPKRLVELKELVTDLVL  419 (565)
T ss_pred             CcccccccCCCCCCcccchhhhhhhhhhcccccccccCCHHHHHHhhhcceEEEecccchHhhhhhhhHHHHHHHHHHHh
Confidence                  00   0    011122456777777766665444444221  22455566655432                  


Q ss_pred             -----ccCCccccCCCCCcEEeCCCCccccCCCcCCcCCCCCcEEEcCCCccCCcCCcccccCCCccEEEcCCccccccC
Q 037302          273 -----GSIPPTIGYLTNLTSLNLGYNQLSSSIPPELMNCSQLQNLVLSHNTLSGIVPPEIGNLTHLRQLDLSHNFINGTI  347 (408)
Q Consensus       273 -----~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~  347 (408)
                           +.++..+..+++|..|++++|.+. ..|..+.++..|+.|+++.|++. ..++.+.....++.+-.++|++....
T Consensus       420 snn~isfv~~~l~~l~kLt~L~L~NN~Ln-~LP~e~~~lv~Lq~LnlS~NrFr-~lP~~~y~lq~lEtllas~nqi~~vd  497 (565)
T KOG0472|consen  420 SNNKISFVPLELSQLQKLTFLDLSNNLLN-DLPEEMGSLVRLQTLNLSFNRFR-MLPECLYELQTLETLLASNNQIGSVD  497 (565)
T ss_pred             hcCccccchHHHHhhhcceeeecccchhh-hcchhhhhhhhhheecccccccc-cchHHHhhHHHHHHHHhccccccccC
Confidence                 123445567889999999998887 56667778888999999999987 67777777777888888889998666


Q ss_pred             CcCCCCCCCccEEeCCCCccCCcCCcccc---CCCeEEccCCccC
Q 037302          348 PSQLGYIPNISAVDLSKNNLSGVVPASVR---IIPKLIVSENNLE  389 (408)
Q Consensus       348 ~~~~~~~~~L~~L~l~~~~l~~~~~~~~~---~l~~l~l~~n~~~  389 (408)
                      +..+.++..|.+|++.+|.+..++| .++   ++++|++.+|++.
T Consensus       498 ~~~l~nm~nL~tLDL~nNdlq~IPp-~LgnmtnL~hLeL~gNpfr  541 (565)
T KOG0472|consen  498 PSGLKNMRNLTTLDLQNNDLQQIPP-ILGNMTNLRHLELDGNPFR  541 (565)
T ss_pred             hHHhhhhhhcceeccCCCchhhCCh-hhccccceeEEEecCCccC
Confidence            6668889999999999999886555 344   4559999999997

>PLN03210 Resistant to P

Probab=99.90  E-value=1.6e-21  Score=201.74  Aligned_cols=337  Identities=23%  Similarity=0.273  Sum_probs=251.4

Q ss_pred             chhhccCCCCcEEeCCCCcC------CCCCcccccCC-CCCcEEeCCCceecccCcccccCCCCCceeecCCccccccCC
Q 037302           36 PSEIGALSKLEELALPYNSL------TGTIPAEIGSL-RNLVELDLSNNILNGSIPLEFGNLKDLDALRLRGNKLDGLIP  108 (408)
Q Consensus        36 ~~~~~~~~~L~~L~l~~~~~------~~~~~~~~~~~-~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~  108 (408)
                      ..+|..+++|+.|.+..+..      ....+..+..+ ++|+.|.+.++.+. .+|..| ...+|+.|++.++.+. ..+
T Consensus       551 ~~aF~~m~~L~~L~~~~~~~~~~~~~~~~lp~~~~~lp~~Lr~L~~~~~~l~-~lP~~f-~~~~L~~L~L~~s~l~-~L~  627 (1153)
T PLN03210        551 ENAFKGMRNLLFLKFYTKKWDQKKEVRWHLPEGFDYLPPKLRLLRWDKYPLR-CMPSNF-RPENLVKLQMQGSKLE-KLW  627 (1153)
T ss_pred             HHHHhcCccccEEEEecccccccccceeecCcchhhcCcccEEEEecCCCCC-CCCCcC-CccCCcEEECcCcccc-ccc
Confidence            45688999999999976532      22345556555 46999999998876 667766 4689999999999887 456


Q ss_pred             CcCCCCCCCCEEEcCCCeecccCcccccCCCCCceEeccCCcccCcCchhhccCCCCCEEEcCCCcCCCCCCccccCCCC
Q 037302          109 SSIGNLTNLTHLDLSLNQLSGRLPQEVGNLKNLLSLFLDNNNLTGPIPSTLYHLNQLSNLYLAYNNLVGPLPKEVGNMKN  188 (408)
Q Consensus       109 ~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~  188 (408)
                      ..+..+++|+.++++++......+ .+..+++|++|++.+|......+..+..+++|+.|++++|.....++..+ .+++
T Consensus       628 ~~~~~l~~Lk~L~Ls~~~~l~~ip-~ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~i-~l~s  705 (1153)
T PLN03210        628 DGVHSLTGLRNIDLRGSKNLKEIP-DLSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTGI-NLKS  705 (1153)
T ss_pred             cccccCCCCCEEECCCCCCcCcCC-ccccCCcccEEEecCCCCccccchhhhccCCCCEEeCCCCCCcCccCCcC-CCCC
Confidence            667889999999999875432444 47788999999999987655778888999999999999987655555543 7899


Q ss_pred             CCEEEecCcccccccCcccccccccCeEEccCCcCCCCCCcccCCCCCccEEEccCCcccc-------cCCccccCCCCC
Q 037302          189 LDSLLLNRNSLTGPIPSTIGYLNLGGKLDLSHNRLDSPIPPTIGNLTNLTSLDLSSNQLSG-------LLPREVGNLKYL  261 (408)
Q Consensus       189 L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~-------~~~~~~~~~~~L  261 (408)
                      |+.|++++|.....++.   ...+++.++++++.+.. .|..+ .+++|++|.+.++....       ..+.....+++|
T Consensus       706 L~~L~Lsgc~~L~~~p~---~~~nL~~L~L~~n~i~~-lP~~~-~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~sL  780 (1153)
T PLN03210        706 LYRLNLSGCSRLKSFPD---ISTNISWLDLDETAIEE-FPSNL-RLENLDELILCEMKSEKLWERVQPLTPLMTMLSPSL  780 (1153)
T ss_pred             CCEEeCCCCCCcccccc---ccCCcCeeecCCCcccc-ccccc-cccccccccccccchhhccccccccchhhhhccccc
Confidence            99999999865433332   24678999999988754 34333 46788888887753221       111122345789


Q ss_pred             CEEeCCCCcccccCCccccCCCCCcEEeCCCCccccCCCcCCcCCCCCcEEEcCCCccCCcCCcccccCCCccEEEcCCc
Q 037302          262 DSLSLDGNNLIGSIPPTIGYLTNLTSLNLGYNQLSSSIPPELMNCSQLQNLVLSHNTLSGIVPPEIGNLTHLRQLDLSHN  341 (408)
Q Consensus       262 ~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~  341 (408)
                      +.|++++|.....++..+.++++|+.|++++|......+... .+++|+.|++++|......+..   .++|+.|++++|
T Consensus       781 ~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~-~L~sL~~L~Ls~c~~L~~~p~~---~~nL~~L~Ls~n  856 (1153)
T PLN03210        781 TRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPTGI-NLESLESLDLSGCSRLRTFPDI---STNISDLNLSRT  856 (1153)
T ss_pred             hheeCCCCCCccccChhhhCCCCCCEEECCCCCCcCeeCCCC-CccccCEEECCCCCcccccccc---ccccCEeECCCC
Confidence            999999998776778889999999999999986544555544 6899999999999644333332   368999999999


Q ss_pred             cccccCCcCCCCCCCccEEeCCCCccCCcCCcc---ccCCCeEEccCCc
Q 037302          342 FINGTIPSQLGYIPNISAVDLSKNNLSGVVPAS---VRIIPKLIVSENN  387 (408)
Q Consensus       342 ~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~---~~~l~~l~l~~n~  387 (408)
                      .++ .+|..+..+++|+.|++++|+-....|..   +..++.+++++|.
T Consensus       857 ~i~-~iP~si~~l~~L~~L~L~~C~~L~~l~~~~~~L~~L~~L~l~~C~  904 (1153)
T PLN03210        857 GIE-EVPWWIEKFSNLSFLDMNGCNNLQRVSLNISKLKHLETVDFSDCG  904 (1153)
T ss_pred             CCc-cChHHHhcCCCCCEEECCCCCCcCccCcccccccCCCeeecCCCc
Confidence            998 67888899999999999998544444443   3455678888876

syringae 6; Provisional

>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]

Probab=99.87  E-value=4.1e-25  Score=207.66  Aligned_cols=362  Identities=33%  Similarity=0.448  Sum_probs=235.2

Q ss_pred             ccCCCCCCcEEEcCCCccccccchhhccCCCCcEEeCCCCcCCCCCcccccCCCCCcEEeCCCceecccCcccccCCCCC
Q 037302           14 NFTCFPNLESIIIPYTLLSGRIPSEIGALSKLEELALPYNSLTGTIPAEIGSLRNLVELDLSNNILNGSIPLEFGNLKDL   93 (408)
Q Consensus        14 ~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L   93 (408)
                      ...++-+|++|+++++.+. ..|..+..+.+|+.|.++.|.+. ..+....++.+|+++.|.++... ..|..+..+.+|
T Consensus        40 ~~~~~v~L~~l~lsnn~~~-~fp~~it~l~~L~~ln~s~n~i~-~vp~s~~~~~~l~~lnL~~n~l~-~lP~~~~~lknl  116 (1081)
T KOG0618|consen   40 FVEKRVKLKSLDLSNNQIS-SFPIQITLLSHLRQLNLSRNYIR-SVPSSCSNMRNLQYLNLKNNRLQ-SLPASISELKNL  116 (1081)
T ss_pred             HhhheeeeEEeeccccccc-cCCchhhhHHHHhhcccchhhHh-hCchhhhhhhcchhheeccchhh-cCchhHHhhhcc
Confidence            3444555888888888776 56666777788888888888776 55667778888888888887766 677777888888


Q ss_pred             ceeecCCccccccCCCcCCCCCC-------------------CCEEEcCCCeecccCcccc-------------------
Q 037302           94 DALRLRGNKLDGLIPSSIGNLTN-------------------LTHLDLSLNQLSGRLPQEV-------------------  135 (408)
Q Consensus        94 ~~L~l~~~~i~~~~~~~l~~l~~-------------------L~~L~l~~~~~~~~~~~~~-------------------  135 (408)
                      ++|+++.|.+..+ |..+..++.                   ++++++..+.+...+..++                   
T Consensus       117 ~~LdlS~N~f~~~-Pl~i~~lt~~~~~~~s~N~~~~~lg~~~ik~~~l~~n~l~~~~~~~i~~l~~~ldLr~N~~~~~dl  195 (1081)
T KOG0618|consen  117 QYLDLSFNHFGPI-PLVIEVLTAEEELAASNNEKIQRLGQTSIKKLDLRLNVLGGSFLIDIYNLTHQLDLRYNEMEVLDL  195 (1081)
T ss_pred             cccccchhccCCC-chhHHhhhHHHHHhhhcchhhhhhccccchhhhhhhhhcccchhcchhhhheeeecccchhhhhhh
Confidence            8888887776533 222222211                   2222222221111111111                   


Q ss_pred             cCC--------------------CCCceEeccCCcccCcCchhhccCCCCCEEEcCCCcCCCCCCccccCCCCCCEEEec
Q 037302          136 GNL--------------------KNLLSLFLDNNNLTGPIPSTLYHLNQLSNLYLAYNNLVGPLPKEVGNMKNLDSLLLN  195 (408)
Q Consensus       136 ~~l--------------------~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~  195 (408)
                      ..+                    ++++.++...|.++... . -....++++++++.+++.. .++++..+.+|+.+...
T Consensus       196 s~~~~l~~l~c~rn~ls~l~~~g~~l~~L~a~~n~l~~~~-~-~p~p~nl~~~dis~n~l~~-lp~wi~~~~nle~l~~n  272 (1081)
T KOG0618|consen  196 SNLANLEVLHCERNQLSELEISGPSLTALYADHNPLTTLD-V-HPVPLNLQYLDISHNNLSN-LPEWIGACANLEALNAN  272 (1081)
T ss_pred             hhccchhhhhhhhcccceEEecCcchheeeeccCcceeec-c-ccccccceeeecchhhhhc-chHHHHhcccceEeccc
Confidence            111                    22333333333332110 0 1113467777777777763 45888888899998888


Q ss_pred             CcccccccCcccccccccCeEEccCCcCCCCCCcccCCCCCccEEEccCCcccccCCccc--------------------
Q 037302          196 RNSLTGPIPSTIGYLNLGGKLDLSHNRLDSPIPPTIGNLTNLTSLDLSSNQLSGLLPREV--------------------  255 (408)
Q Consensus       196 ~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~--------------------  255 (408)
                      .|.+. ..+........|+.+.+..|.+.. .+..+.....|++|++..+++.+.....+                    
T Consensus       273 ~N~l~-~lp~ri~~~~~L~~l~~~~nel~y-ip~~le~~~sL~tLdL~~N~L~~lp~~~l~v~~~~l~~ln~s~n~l~~l  350 (1081)
T KOG0618|consen  273 HNRLV-ALPLRISRITSLVSLSAAYNELEY-IPPFLEGLKSLRTLDLQSNNLPSLPDNFLAVLNASLNTLNVSSNKLSTL  350 (1081)
T ss_pred             chhHH-hhHHHHhhhhhHHHHHhhhhhhhh-CCCcccccceeeeeeehhccccccchHHHhhhhHHHHHHhhhhcccccc
Confidence            88775 334444555666666666665543 33445556667777776665543221111                    


Q ss_pred             -----cCCCCCCEEeCCCCcccccCCccccCCCCCcEEeCCCCccccCCCcCCcCCCCCcEEEcCCCccCCcCCcccccC
Q 037302          256 -----GNLKYLDSLSLDGNNLIGSIPPTIGYLTNLTSLNLGYNQLSSSIPPELMNCSQLQNLVLSHNTLSGIVPPEIGNL  330 (408)
Q Consensus       256 -----~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~  330 (408)
                           ...+.|+.|.+.+|.+++.....+.++++|+.|++++|.+.......+.+++.|++|+++||+++ .+++.+..+
T Consensus       351 p~~~e~~~~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsyNrL~~fpas~~~kle~LeeL~LSGNkL~-~Lp~tva~~  429 (1081)
T KOG0618|consen  351 PSYEENNHAALQELYLANNHLTDSCFPVLVNFKHLKVLHLSYNRLNSFPASKLRKLEELEELNLSGNKLT-TLPDTVANL  429 (1081)
T ss_pred             ccccchhhHHHHHHHHhcCcccccchhhhccccceeeeeecccccccCCHHHHhchHHhHHHhcccchhh-hhhHHHHhh
Confidence                 12244677777777777666666778889999999999888666677788888999999999887 445777888


Q ss_pred             CCccEEEcCCccccccCCcCCCCCCCccEEeCCCCccCCc-CCcccc--CCCeEEccCCc
Q 037302          331 THLRQLDLSHNFINGTIPSQLGYIPNISAVDLSKNNLSGV-VPASVR--IIPKLIVSENN  387 (408)
Q Consensus       331 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~-~~~~~~--~l~~l~l~~n~  387 (408)
                      +.|++|...+|++. ..| .++.++.|+.++++.|+++.. .|+.+.  +|++||+++|.
T Consensus       430 ~~L~tL~ahsN~l~-~fP-e~~~l~qL~~lDlS~N~L~~~~l~~~~p~p~LkyLdlSGN~  487 (1081)
T KOG0618|consen  430 GRLHTLRAHSNQLL-SFP-ELAQLPQLKVLDLSCNNLSEVTLPEALPSPNLKYLDLSGNT  487 (1081)
T ss_pred             hhhHHHhhcCCcee-ech-hhhhcCcceEEecccchhhhhhhhhhCCCcccceeeccCCc
Confidence            88888888888888 666 677888899999999988655 444444  68888988887

>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]

Probab=99.87  E-value=1e-24  Score=204.97  Aligned_cols=235  Identities=31%  Similarity=0.407  Sum_probs=146.1

Q ss_pred             CcEEEcCCCccccccchhhccCCCCcEEeCCCCcCCCCCcccccCCCCCcEEeCCCceecccCcccccCCCCCceeecCC
Q 037302           21 LESIIIPYTLLSGRIPSEIGALSKLEELALPYNSLTGTIPAEIGSLRNLVELDLSNNILNGSIPLEFGNLKDLDALRLRG  100 (408)
Q Consensus        21 L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~  100 (408)
                      +..|++..+.+.....+...++.+|+.|+++++.+. ..|..+..+.+|+.|+++++.+. ..|....++.+|+++.|.+
T Consensus        23 ~~~ln~~~N~~l~~pl~~~~~~v~L~~l~lsnn~~~-~fp~~it~l~~L~~ln~s~n~i~-~vp~s~~~~~~l~~lnL~~  100 (1081)
T KOG0618|consen   23 LQILNLRRNSLLSRPLEFVEKRVKLKSLDLSNNQIS-SFPIQITLLSHLRQLNLSRNYIR-SVPSSCSNMRNLQYLNLKN  100 (1081)
T ss_pred             HHhhhccccccccCchHHhhheeeeEEeeccccccc-cCCchhhhHHHHhhcccchhhHh-hCchhhhhhhcchhheecc
Confidence            777777777665333455566777999999999886 66777888999999999999988 6777788999999999999


Q ss_pred             ccccccCCCcCCCCCCCCEEEcCCCeecccCcccccCCCC-------------------CceEeccCCcccCcCchhhcc
Q 037302          101 NKLDGLIPSSIGNLTNLTHLDLSLNQLSGRLPQEVGNLKN-------------------LLSLFLDNNNLTGPIPSTLYH  161 (408)
Q Consensus       101 ~~i~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~-------------------L~~L~l~~~~~~~~~~~~~~~  161 (408)
                      +... ..|..+..+.+|+.|+++.|.+.. .|..+..+..                   ++.+++..+.+.......+..
T Consensus       101 n~l~-~lP~~~~~lknl~~LdlS~N~f~~-~Pl~i~~lt~~~~~~~s~N~~~~~lg~~~ik~~~l~~n~l~~~~~~~i~~  178 (1081)
T KOG0618|consen  101 NRLQ-SLPASISELKNLQYLDLSFNHFGP-IPLVIEVLTAEEELAASNNEKIQRLGQTSIKKLDLRLNVLGGSFLIDIYN  178 (1081)
T ss_pred             chhh-cCchhHHhhhcccccccchhccCC-CchhHHhhhHHHHHhhhcchhhhhhccccchhhhhhhhhcccchhcchhh
Confidence            9876 667778999999999999997762 2222222222                   444444444443333333333


Q ss_pred             CCCCCEEEcCCCcCCCCCCccccCCCCCCEEEecCcccccccCcccccccccCeEEccCCcCCCCCCcccCCCCCccEEE
Q 037302          162 LNQLSNLYLAYNNLVGPLPKEVGNMKNLDSLLLNRNSLTGPIPSTIGYLNLGGKLDLSHNRLDSPIPPTIGNLTNLTSLD  241 (408)
Q Consensus       162 ~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~l~~~~~L~~L~  241 (408)
                      +..  .+++.+|.+. .  ..+..+++|+.+....+.+...    --.-++++.+..+.|.++.....  ....+|++++
T Consensus       179 l~~--~ldLr~N~~~-~--~dls~~~~l~~l~c~rn~ls~l----~~~g~~l~~L~a~~n~l~~~~~~--p~p~nl~~~d  247 (1081)
T KOG0618|consen  179 LTH--QLDLRYNEME-V--LDLSNLANLEVLHCERNQLSEL----EISGPSLTALYADHNPLTTLDVH--PVPLNLQYLD  247 (1081)
T ss_pred             hhe--eeecccchhh-h--hhhhhccchhhhhhhhcccceE----EecCcchheeeeccCcceeeccc--cccccceeee
Confidence            332  4777777655 1  2345566666666655554321    11234455555555554422111  1224555555


Q ss_pred             ccCCcccccCCccccCCCCCCEEeCCCCcc
Q 037302          242 LSSNQLSGLLPREVGNLKYLDSLSLDGNNL  271 (408)
Q Consensus       242 l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~  271 (408)
                      ++.+.+.. .+.++..+.+|+.++..++.+
T Consensus       248 is~n~l~~-lp~wi~~~~nle~l~~n~N~l  276 (1081)
T KOG0618|consen  248 ISHNNLSN-LPEWIGACANLEALNANHNRL  276 (1081)
T ss_pred             cchhhhhc-chHHHHhcccceEecccchhH
Confidence            55555552 225555555555555555544

>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]

Probab=99.85  E-value=9.2e-24  Score=180.85  Aligned_cols=121  Identities=22%  Similarity=0.264  Sum_probs=80.6

Q ss_pred             CCcccccccccCCCCCCcEEEcCCCccccccchhhccCCCCcEEeCCC-CcCCCCCcccccCCCCCcEEeCCCceecccC
Q 037302            5 GNAAELSQLNFTCFPNLESIIIPYTLLSGRIPSEIGALSKLEELALPY-NSLTGTIPAEIGSLRNLVELDLSNNILNGSI   83 (408)
Q Consensus         5 ~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~-~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~   83 (408)
                      |.|..|+..+|+.++.||+|+|+.+.+....|++|..+++|.+|.+.+ |+|++.....|.++..|+.|.+.-+.+....
T Consensus        77 N~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~slqrLllNan~i~Cir  156 (498)
T KOG4237|consen   77 NQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGLSSLQRLLLNANHINCIR  156 (498)
T ss_pred             CCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHHHHHHhcChhhhcchh
Confidence            566677777777777777777777777666666777777766666655 6666555566667777777777666666666


Q ss_pred             cccccCCCCCceeecCCccccccCCCcCCCCCCCCEEEcCCC
Q 037302           84 PLEFGNLKDLDALRLRGNKLDGLIPSSIGNLTNLTHLDLSLN  125 (408)
Q Consensus        84 ~~~~~~l~~L~~L~l~~~~i~~~~~~~l~~l~~L~~L~l~~~  125 (408)
                      ..+|..++++..|.+-++.+..+....|..+..++.+.+..+
T Consensus       157 ~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~n  198 (498)
T KOG4237|consen  157 QDALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQN  198 (498)
T ss_pred             HHHHHHhhhcchhcccchhhhhhccccccchhccchHhhhcC
Confidence            666667777777777776666555555666666666655444

>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]

Probab=99.83  E-value=3.2e-23  Score=177.59  Aligned_cols=131  Identities=29%  Similarity=0.350  Sum_probs=104.7

Q ss_pred             CCcEEeCCCCcCCCCCcccccCCCCCcEEeCCCceecccCcccccCCCCCceeecCC-ccccccCCCcCCCCCCCCEEEc
Q 037302           44 KLEELALPYNSLTGTIPAEIGSLRNLVELDLSNNILNGSIPLEFGNLKDLDALRLRG-NKLDGLIPSSIGNLTNLTHLDL  122 (408)
Q Consensus        44 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~-~~i~~~~~~~l~~l~~L~~L~l  122 (408)
                      .-.+|.|..|+|+.+.+.+|..+++|+.|+|++|.|..+.|.+|..++.+-.|.+-+ |+|+.+....|.++..++.|.+
T Consensus        68 ~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~slqrLll  147 (498)
T KOG4237|consen   68 ETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGLSSLQRLLL  147 (498)
T ss_pred             cceEEEeccCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHHHHHHhc
Confidence            467778888888877888888888888888888888888888888888877777766 7788787788888888888888


Q ss_pred             CCCeecccCcccccCCCCCceEeccCCcccCcCchhhccCCCCCEEEcCCCc
Q 037302          123 SLNQLSGRLPQEVGNLKNLLSLFLDNNNLTGPIPSTLYHLNQLSNLYLAYNN  174 (408)
Q Consensus       123 ~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~  174 (408)
                      .-+.+.....++|..++++..|.+.++.+..+-..+|..+..++.+.+..+.
T Consensus       148 Nan~i~Cir~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~np  199 (498)
T KOG4237|consen  148 NANHINCIRQDALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQNP  199 (498)
T ss_pred             ChhhhcchhHHHHHHhhhcchhcccchhhhhhccccccchhccchHhhhcCc
Confidence            8887776777788888888888888887775544567777778887776665

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=99.75  E-value=2.5e-17  Score=159.58  Aligned_cols=266  Identities=29%  Similarity=0.336  Sum_probs=173.7

Q ss_pred             CCcEEeCCCceecccCcccccCCCCCceeecCCccccccCCCcCCCCCCCCEEEcCCCeecccCcccccCCCCCceEecc
Q 037302           68 NLVELDLSNNILNGSIPLEFGNLKDLDALRLRGNKLDGLIPSSIGNLTNLTHLDLSLNQLSGRLPQEVGNLKNLLSLFLD  147 (408)
Q Consensus        68 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~  147 (408)
                      .-..|+++.+.+. .+|..+.  ++|+.|++.+|+++.++ .   .+++|++|++++|.++. ++.   ..++|+.|+++
T Consensus       202 ~~~~LdLs~~~Lt-sLP~~l~--~~L~~L~L~~N~Lt~LP-~---lp~~Lk~LdLs~N~Lts-LP~---lp~sL~~L~Ls  270 (788)
T PRK15387        202 GNAVLNVGESGLT-TLPDCLP--AHITTLVIPDNNLTSLP-A---LPPELRTLEVSGNQLTS-LPV---LPPGLLELSIF  270 (788)
T ss_pred             CCcEEEcCCCCCC-cCCcchh--cCCCEEEccCCcCCCCC-C---CCCCCcEEEecCCccCc-ccC---cccccceeecc
Confidence            4556777777776 4555443  46788888887776442 2   25778888888887763 332   24677888888


Q ss_pred             CCcccCcCchhhccCCCCCEEEcCCCcCCCCCCccccCCCCCCEEEecCcccccccCcccccccccCeEEccCCcCCCCC
Q 037302          148 NNNLTGPIPSTLYHLNQLSNLYLAYNNLVGPLPKEVGNMKNLDSLLLNRNSLTGPIPSTIGYLNLGGKLDLSHNRLDSPI  227 (408)
Q Consensus       148 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~  227 (408)
                      +|.+.. ++.   ..++|+.|++++|.+.. ++.   ..++|+.|++++|.+... +.   .+..|+.|.+++|.+.. +
T Consensus       271 ~N~L~~-Lp~---lp~~L~~L~Ls~N~Lt~-LP~---~p~~L~~LdLS~N~L~~L-p~---lp~~L~~L~Ls~N~L~~-L  337 (788)
T PRK15387        271 SNPLTH-LPA---LPSGLCKLWIFGNQLTS-LPV---LPPGLQELSVSDNQLASL-PA---LPSELCKLWAYNNQLTS-L  337 (788)
T ss_pred             CCchhh-hhh---chhhcCEEECcCCcccc-ccc---cccccceeECCCCccccC-CC---CcccccccccccCcccc-c
Confidence            777662 222   13567778888877653 222   346788888888877642 22   23457777777777754 2


Q ss_pred             CcccCCCCCccEEEccCCcccccCCccccCCCCCCEEeCCCCcccccCCccccCCCCCcEEeCCCCccccCCCcCCcCCC
Q 037302          228 PPTIGNLTNLTSLDLSSNQLSGLLPREVGNLKYLDSLSLDGNNLIGSIPPTIGYLTNLTSLNLGYNQLSSSIPPELMNCS  307 (408)
Q Consensus       228 ~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~  307 (408)
                      |.   ...+|+.|++++|.+... +..   .++|+.|.+++|.+.. ++.   ...+|+.|++++|.++. .+..   .+
T Consensus       338 P~---lp~~Lq~LdLS~N~Ls~L-P~l---p~~L~~L~Ls~N~L~~-LP~---l~~~L~~LdLs~N~Lt~-LP~l---~s  402 (788)
T PRK15387        338 PT---LPSGLQELSVSDNQLASL-PTL---PSELYKLWAYNNRLTS-LPA---LPSGLKELIVSGNRLTS-LPVL---PS  402 (788)
T ss_pred             cc---cccccceEecCCCccCCC-CCC---Ccccceehhhcccccc-Ccc---cccccceEEecCCcccC-CCCc---cc
Confidence            22   124788888888877642 221   3567778888777663 222   23578888888888773 3322   25


Q ss_pred             CCcEEEcCCCccCCcCCcccccCCCccEEEcCCccccccCCcCCCCCCCccEEeCCCCccCCcCCccccC
Q 037302          308 QLQNLVLSHNTLSGIVPPEIGNLTHLRQLDLSHNFINGTIPSQLGYIPNISAVDLSKNNLSGVVPASVRI  377 (408)
Q Consensus       308 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~  377 (408)
                      +|+.|++++|++.. ++..   ..+|+.|++++|+++ .+|..+..+++|+.|++++|++.+..|..+..
T Consensus       403 ~L~~LdLS~N~Lss-IP~l---~~~L~~L~Ls~NqLt-~LP~sl~~L~~L~~LdLs~N~Ls~~~~~~L~~  467 (788)
T PRK15387        403 ELKELMVSGNRLTS-LPML---PSGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTLQALRE  467 (788)
T ss_pred             CCCEEEccCCcCCC-CCcc---hhhhhhhhhccCccc-ccChHHhhccCCCeEECCCCCCCchHHHHHHH
Confidence            78888888888774 3332   246778888888887 66777778888888888888888776665533

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=99.73  E-value=5.8e-17  Score=157.01  Aligned_cols=265  Identities=27%  Similarity=0.309  Sum_probs=198.0

Q ss_pred             CCCceeecCCccccccCCCcCCCCCCCCEEEcCCCeecccCcccccCCCCCceEeccCCcccCcCchhhccCCCCCEEEc
Q 037302           91 KDLDALRLRGNKLDGLIPSSIGNLTNLTHLDLSLNQLSGRLPQEVGNLKNLLSLFLDNNNLTGPIPSTLYHLNQLSNLYL  170 (408)
Q Consensus        91 ~~L~~L~l~~~~i~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l  170 (408)
                      ..-..|+++.+.++.+ |..+.  ++|+.|.+.+|.++. ++.   .+++|++|++++|.++. ++.   ..++|+.|++
T Consensus       201 ~~~~~LdLs~~~LtsL-P~~l~--~~L~~L~L~~N~Lt~-LP~---lp~~Lk~LdLs~N~Lts-LP~---lp~sL~~L~L  269 (788)
T PRK15387        201 NGNAVLNVGESGLTTL-PDCLP--AHITTLVIPDNNLTS-LPA---LPPELRTLEVSGNQLTS-LPV---LPPGLLELSI  269 (788)
T ss_pred             CCCcEEEcCCCCCCcC-Ccchh--cCCCEEEccCCcCCC-CCC---CCCCCcEEEecCCccCc-ccC---cccccceeec
Confidence            4577899999988854 44453  589999999998874 333   36899999999999884 333   2478999999


Q ss_pred             CCCcCCCCCCccccCCCCCCEEEecCcccccccCcccccccccCeEEccCCcCCCCCCcccCCCCCccEEEccCCccccc
Q 037302          171 AYNNLVGPLPKEVGNMKNLDSLLLNRNSLTGPIPSTIGYLNLGGKLDLSHNRLDSPIPPTIGNLTNLTSLDLSSNQLSGL  250 (408)
Q Consensus       171 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~  250 (408)
                      ++|.+.. ++.   ...+|+.|++.+|.+... +.   .++.|+.|++++|.+... +..   ...|+.|.+++|.+.. 
T Consensus       270 s~N~L~~-Lp~---lp~~L~~L~Ls~N~Lt~L-P~---~p~~L~~LdLS~N~L~~L-p~l---p~~L~~L~Ls~N~L~~-  336 (788)
T PRK15387        270 FSNPLTH-LPA---LPSGLCKLWIFGNQLTSL-PV---LPPGLQELSVSDNQLASL-PAL---PSELCKLWAYNNQLTS-  336 (788)
T ss_pred             cCCchhh-hhh---chhhcCEEECcCCccccc-cc---cccccceeECCCCccccC-CCC---cccccccccccCcccc-
Confidence            9998763 222   236788999999988743 22   357899999999988753 322   3568899999998874 


Q ss_pred             CCccccCCCCCCEEeCCCCcccccCCccccCCCCCcEEeCCCCccccCCCcCCcCCCCCcEEEcCCCccCCcCCcccccC
Q 037302          251 LPREVGNLKYLDSLSLDGNNLIGSIPPTIGYLTNLTSLNLGYNQLSSSIPPELMNCSQLQNLVLSHNTLSGIVPPEIGNL  330 (408)
Q Consensus       251 ~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~  330 (408)
                      .+.   ...+|+.|++++|.+... +.   ..++|+.|++++|.+.. ++..   ..+|+.|++++|.+.. .+..   .
T Consensus       337 LP~---lp~~Lq~LdLS~N~Ls~L-P~---lp~~L~~L~Ls~N~L~~-LP~l---~~~L~~LdLs~N~Lt~-LP~l---~  401 (788)
T PRK15387        337 LPT---LPSGLQELSVSDNQLASL-PT---LPSELYKLWAYNNRLTS-LPAL---PSGLKELIVSGNRLTS-LPVL---P  401 (788)
T ss_pred             ccc---cccccceEecCCCccCCC-CC---CCcccceehhhcccccc-Cccc---ccccceEEecCCcccC-CCCc---c
Confidence            332   125899999999998743 32   24689999999999884 4432   3579999999999884 3332   3


Q ss_pred             CCccEEEcCCccccccCCcCCCCCCCccEEeCCCCccCCcCCcccc---CCCeEEccCCccCCCCCCCcCCC
Q 037302          331 THLRQLDLSHNFINGTIPSQLGYIPNISAVDLSKNNLSGVVPASVR---IIPKLIVSENNLELENSTSSENA  399 (408)
Q Consensus       331 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~---~l~~l~l~~n~~~~~~~~~~~~~  399 (408)
                      ++|+.|++++|+++ .+|..   ..+|+.|++++|+++. +|..+.   ++..|++++|++++.+|..+..+
T Consensus       402 s~L~~LdLS~N~Ls-sIP~l---~~~L~~L~Ls~NqLt~-LP~sl~~L~~L~~LdLs~N~Ls~~~~~~L~~l  468 (788)
T PRK15387        402 SELKELMVSGNRLT-SLPML---PSGLLSLSVYRNQLTR-LPESLIHLSSETTVNLEGNPLSERTLQALREI  468 (788)
T ss_pred             cCCCEEEccCCcCC-CCCcc---hhhhhhhhhccCcccc-cChHHhhccCCCeEECCCCCCCchHHHHHHHH
Confidence            68999999999998 45643   3578999999999985 566555   56699999999999988877443

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=99.70  E-value=6.4e-19  Score=159.20  Aligned_cols=56  Identities=32%  Similarity=0.392  Sum_probs=25.9

Q ss_pred             EeCCCceec-ccCcccccCCCCCceeecCCcccccc----CCCcCCCCCCCCEEEcCCCee
Q 037302           72 LDLSNNILN-GSIPLEFGNLKDLDALRLRGNKLDGL----IPSSIGNLTNLTHLDLSLNQL  127 (408)
Q Consensus        72 L~l~~~~~~-~~~~~~~~~l~~L~~L~l~~~~i~~~----~~~~l~~l~~L~~L~l~~~~~  127 (408)
                      |+|.++.+. ......+..+.+|++++++++.++..    .+..+...+++++++++++.+
T Consensus         3 l~L~~~~l~~~~~~~~~~~l~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~   63 (319)
T cd00116           3 LSLKGELLKTERATELLPKLLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNET   63 (319)
T ss_pred             cccccCcccccchHHHHHHHhhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEecccccc
Confidence            444444443 22334444555566666666654321    122233444455555554433

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=99.68  E-value=1.3e-18  Score=157.11  Aligned_cols=110  Identities=24%  Similarity=0.260  Sum_probs=58.8

Q ss_pred             CCCCCEEeCCCCccccc----CCccccCCCCCcEEeCCCCccccCCCcCCc-----CCCCCcEEEcCCCccCCc----CC
Q 037302          258 LKYLDSLSLDGNNLIGS----IPPTIGYLTNLTSLNLGYNQLSSSIPPELM-----NCSQLQNLVLSHNTLSGI----VP  324 (408)
Q Consensus       258 ~~~L~~L~l~~~~~~~~----~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~-----~~~~L~~L~l~~~~~~~~----~~  324 (408)
                      .++|+.|++++|.+.+.    ....+..+++|++|++++|.+++.....+.     ..+.|++|++++|.+++.    ..
T Consensus       192 ~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~l~~~~~~~l~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~  271 (319)
T cd00116         192 NCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLTDAGAAALASALLSPNISLLTLSLSCNDITDDGAKDLA  271 (319)
T ss_pred             CCCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCCcCchHHHHHHHHHHhccCCCceEEEccCCCCCcHHHHHHH
Confidence            34555555555544322    122344556666666666665532111111     236777777777766521    12


Q ss_pred             cccccCCCccEEEcCCccccccC----CcCCCCC-CCccEEeCCCCcc
Q 037302          325 PEIGNLTHLRQLDLSHNFINGTI----PSQLGYI-PNISAVDLSKNNL  367 (408)
Q Consensus       325 ~~~~~~~~L~~L~l~~~~~~~~~----~~~~~~~-~~L~~L~l~~~~l  367 (408)
                      ..+..+++|+.+++++|.+.+..    ...+... +.|+++++.++++
T Consensus       272 ~~~~~~~~L~~l~l~~N~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  319 (319)
T cd00116         272 EVLAEKESLLELDLRGNKFGEEGAQLLAESLLEPGNELESLWVKDDSF  319 (319)
T ss_pred             HHHhcCCCccEEECCCCCCcHHHHHHHHHHHhhcCCchhhcccCCCCC
Confidence            33345567777777777777442    2223333 5777777777653

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=99.61  E-value=4.9e-15  Score=144.55  Aligned_cols=256  Identities=26%  Similarity=0.431  Sum_probs=143.0

Q ss_pred             CCceeecCCccccccCCCcCCCCCCCCEEEcCCCeecccCcccccCCCCCceEeccCCcccCcCchhhccCCCCCEEEcC
Q 037302           92 DLDALRLRGNKLDGLIPSSIGNLTNLTHLDLSLNQLSGRLPQEVGNLKNLLSLFLDNNNLTGPIPSTLYHLNQLSNLYLA  171 (408)
Q Consensus        92 ~L~~L~l~~~~i~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~  171 (408)
                      +...|++++..++.+ |..+  .++++.|++++|.+.. ++..+.  ++|++|++++|.++. ++..+  .+.|+.|+++
T Consensus       179 ~~~~L~L~~~~LtsL-P~~I--p~~L~~L~Ls~N~Lts-LP~~l~--~nL~~L~Ls~N~Lts-LP~~l--~~~L~~L~Ls  249 (754)
T PRK15370        179 NKTELRLKILGLTTI-PACI--PEQITTLILDNNELKS-LPENLQ--GNIKTLYANSNQLTS-IPATL--PDTIQEMELS  249 (754)
T ss_pred             CceEEEeCCCCcCcC-Cccc--ccCCcEEEecCCCCCc-CChhhc--cCCCEEECCCCcccc-CChhh--hccccEEECc
Confidence            355666666555533 2222  2456666666666652 333222  356666666666552 23222  2356666666


Q ss_pred             CCcCCCCCCccccCCCCCCEEEecCcccccccCcccccccccCeEEccCCcCCCCCCcccCCCCCccEEEccCCcccccC
Q 037302          172 YNNLVGPLPKEVGNMKNLDSLLLNRNSLTGPIPSTIGYLNLGGKLDLSHNRLDSPIPPTIGNLTNLTSLDLSSNQLSGLL  251 (408)
Q Consensus       172 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~  251 (408)
                      +|.+.. ++..+  ..+|+.|++++|.+.. ++..+  ++.|+.|++++|.+... +..+  .++|+.|++++|.+.. .
T Consensus       250 ~N~L~~-LP~~l--~s~L~~L~Ls~N~L~~-LP~~l--~~sL~~L~Ls~N~Lt~L-P~~l--p~sL~~L~Ls~N~Lt~-L  319 (754)
T PRK15370        250 INRITE-LPERL--PSALQSLDLFHNKISC-LPENL--PEELRYLSVYDNSIRTL-PAHL--PSGITHLNVQSNSLTA-L  319 (754)
T ss_pred             CCccCc-CChhH--hCCCCEEECcCCccCc-ccccc--CCCCcEEECCCCccccC-cccc--hhhHHHHHhcCCcccc-C
Confidence            666552 23222  2356666666666552 23222  24667777777666542 2222  2467777777776663 2


Q ss_pred             CccccCCCCCCEEeCCCCcccccCCccccCCCCCcEEeCCCCccccCCCcCCcCCCCCcEEEcCCCccCCcCCcccccCC
Q 037302          252 PREVGNLKYLDSLSLDGNNLIGSIPPTIGYLTNLTSLNLGYNQLSSSIPPELMNCSQLQNLVLSHNTLSGIVPPEIGNLT  331 (408)
Q Consensus       252 ~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~  331 (408)
                      +..+  .++|+.|.+++|.+.. .+..+  +++|+.|++++|.+. ..+..+.  ++|+.|++++|.+.. .+..+.  +
T Consensus       320 P~~l--~~sL~~L~Ls~N~Lt~-LP~~l--~~sL~~L~Ls~N~L~-~LP~~lp--~~L~~LdLs~N~Lt~-LP~~l~--~  388 (754)
T PRK15370        320 PETL--PPGLKTLEAGENALTS-LPASL--PPELQVLDVSKNQIT-VLPETLP--PTITTLDVSRNALTN-LPENLP--A  388 (754)
T ss_pred             Cccc--cccceeccccCCcccc-CChhh--cCcccEEECCCCCCC-cCChhhc--CCcCEEECCCCcCCC-CCHhHH--H
Confidence            2222  2567777777777653 33222  367888888887776 3343332  578888888887763 333332  3


Q ss_pred             CccEEEcCCccccccCCcC----CCCCCCccEEeCCCCccCCcCCccccCCCeE
Q 037302          332 HLRQLDLSHNFINGTIPSQ----LGYIPNISAVDLSKNNLSGVVPASVRIIPKL  381 (408)
Q Consensus       332 ~L~~L~l~~~~~~~~~~~~----~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~l  381 (408)
                      .|+.|++++|++. .+|..    ...++.+..+++.+|++.   ...+.+++.+
T Consensus       389 sL~~LdLs~N~L~-~LP~sl~~~~~~~~~l~~L~L~~Npls---~~tl~~L~~L  438 (754)
T PRK15370        389 ALQIMQASRNNLV-RLPESLPHFRGEGPQPTRIIVEYNPFS---ERTIQNMQRL  438 (754)
T ss_pred             HHHHHhhccCCcc-cCchhHHHHhhcCCCccEEEeeCCCcc---HHHHHHHHHh
Confidence            6778888888777 44433    233467778888888775   2344444444

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=99.57  E-value=1.4e-14  Score=141.39  Aligned_cols=245  Identities=28%  Similarity=0.473  Sum_probs=166.3

Q ss_pred             CCCCEEEcCCCeecccCcccccCCCCCceEeccCCcccCcCchhhccCCCCCEEEcCCCcCCCCCCccccCCCCCCEEEe
Q 037302          115 TNLTHLDLSLNQLSGRLPQEVGNLKNLLSLFLDNNNLTGPIPSTLYHLNQLSNLYLAYNNLVGPLPKEVGNMKNLDSLLL  194 (408)
Q Consensus       115 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l  194 (408)
                      .+...|++++..+.. +|..+  .+.++.|++++|.++. ++..+.  ++|+.|++++|.+.. ++..+  .++|+.|++
T Consensus       178 ~~~~~L~L~~~~Lts-LP~~I--p~~L~~L~Ls~N~Lts-LP~~l~--~nL~~L~Ls~N~Lts-LP~~l--~~~L~~L~L  248 (754)
T PRK15370        178 NNKTELRLKILGLTT-IPACI--PEQITTLILDNNELKS-LPENLQ--GNIKTLYANSNQLTS-IPATL--PDTIQEMEL  248 (754)
T ss_pred             cCceEEEeCCCCcCc-CCccc--ccCCcEEEecCCCCCc-CChhhc--cCCCEEECCCCcccc-CChhh--hccccEEEC
Confidence            356778888877763 34433  3578899999888874 444333  588999998887763 33322  357888999


Q ss_pred             cCcccccccCcccccccccCeEEccCCcCCCCCCcccCCCCCccEEEccCCcccccCCccccCCCCCCEEeCCCCccccc
Q 037302          195 NRNSLTGPIPSTIGYLNLGGKLDLSHNRLDSPIPPTIGNLTNLTSLDLSSNQLSGLLPREVGNLKYLDSLSLDGNNLIGS  274 (408)
Q Consensus       195 ~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~  274 (408)
                      ++|.+.. ++..+  +..|+.|++++|.+.. .+..+.  ++|+.|++++|.+.. .+..+  .++|+.|++++|.+...
T Consensus       249 s~N~L~~-LP~~l--~s~L~~L~Ls~N~L~~-LP~~l~--~sL~~L~Ls~N~Lt~-LP~~l--p~sL~~L~Ls~N~Lt~L  319 (754)
T PRK15370        249 SINRITE-LPERL--PSALQSLDLFHNKISC-LPENLP--EELRYLSVYDNSIRT-LPAHL--PSGITHLNVQSNSLTAL  319 (754)
T ss_pred             cCCccCc-CChhH--hCCCCEEECcCCccCc-cccccC--CCCcEEECCCCcccc-Ccccc--hhhHHHHHhcCCccccC
Confidence            8888763 33333  3578889998888774 344332  578999999888774 33222  24688888888877643


Q ss_pred             CCccccCCCCCcEEeCCCCccccCCCcCCcCCCCCcEEEcCCCccCCcCCcccccCCCccEEEcCCccccccCCcCCCCC
Q 037302          275 IPPTIGYLTNLTSLNLGYNQLSSSIPPELMNCSQLQNLVLSHNTLSGIVPPEIGNLTHLRQLDLSHNFINGTIPSQLGYI  354 (408)
Q Consensus       275 ~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~  354 (408)
                       +..  ..++|+.|++++|.++. .+..+.  ++|+.|++++|++. ..+..+  .++|+.|++++|.++ .+|..+.  
T Consensus       320 -P~~--l~~sL~~L~Ls~N~Lt~-LP~~l~--~sL~~L~Ls~N~L~-~LP~~l--p~~L~~LdLs~N~Lt-~LP~~l~--  387 (754)
T PRK15370        320 -PET--LPPGLKTLEAGENALTS-LPASLP--PELQVLDVSKNQIT-VLPETL--PPTITTLDVSRNALT-NLPENLP--  387 (754)
T ss_pred             -Ccc--ccccceeccccCCcccc-CChhhc--CcccEEECCCCCCC-cCChhh--cCCcCEEECCCCcCC-CCCHhHH--
Confidence             222  23688899999888874 443333  68999999998887 344444  268899999999888 4454432  


Q ss_pred             CCccEEeCCCCccCCcCCccc-------cCCCeEEccCCccCC
Q 037302          355 PNISAVDLSKNNLSGVVPASV-------RIIPKLIVSENNLEL  390 (408)
Q Consensus       355 ~~L~~L~l~~~~l~~~~~~~~-------~~l~~l~l~~n~~~~  390 (408)
                      .+|+.|++++|++..+ |+.+       ..+.+|++.+|+++.
T Consensus       388 ~sL~~LdLs~N~L~~L-P~sl~~~~~~~~~l~~L~L~~Npls~  429 (754)
T PRK15370        388 AALQIMQASRNNLVRL-PESLPHFRGEGPQPTRIIVEYNPFSE  429 (754)
T ss_pred             HHHHHHhhccCCcccC-chhHHHHhhcCCCccEEEeeCCCccH
Confidence            4688889999988754 4332       334588999998863

>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]

Probab=99.41  E-value=3.8e-15  Score=113.99  Aligned_cols=157  Identities=34%  Similarity=0.573  Sum_probs=106.1

Q ss_pred             hccCCCCcEEeCCCCcCCCCCcccccCCCCCcEEeCCCceecccCcccccCCCCCceeecCCccccccCCCcCCCCCCCC
Q 037302           39 IGALSKLEELALPYNSLTGTIPAEIGSLRNLVELDLSNNILNGSIPLEFGNLKDLDALRLRGNKLDGLIPSSIGNLTNLT  118 (408)
Q Consensus        39 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~l~~l~~L~  118 (408)
                      +..+.+.+.|.+++++++ ..+-.+..+.+|++|+++++++. .+|..+..+++|+.|++.-+++. +.|..|+.++.|+
T Consensus        29 Lf~~s~ITrLtLSHNKl~-~vppnia~l~nlevln~~nnqie-~lp~~issl~klr~lnvgmnrl~-~lprgfgs~p~le  105 (264)
T KOG0617|consen   29 LFNMSNITRLTLSHNKLT-VVPPNIAELKNLEVLNLSNNQIE-ELPTSISSLPKLRILNVGMNRLN-ILPRGFGSFPALE  105 (264)
T ss_pred             ccchhhhhhhhcccCcee-ecCCcHHHhhhhhhhhcccchhh-hcChhhhhchhhhheecchhhhh-cCccccCCCchhh
Confidence            444556667777777766 44555667777777777777776 56666777777777777766655 6667777777777


Q ss_pred             EEEcCCCeec-ccCcccccCCCCCceEeccCCcccCcCchhhccCCCCCEEEcCCCcCCCCCCccccCCCCCCEEEecCc
Q 037302          119 HLDLSLNQLS-GRLPQEVGNLKNLLSLFLDNNNLTGPIPSTLYHLNQLSNLYLAYNNLVGPLPKEVGNMKNLDSLLLNRN  197 (408)
Q Consensus       119 ~L~l~~~~~~-~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~  197 (408)
                      .|++..|.+. ...|..|..+..|+.|+++++.+. +++..++++++|+.|.+..|++. ..+..+..+..|++|++.+|
T Consensus       106 vldltynnl~e~~lpgnff~m~tlralyl~dndfe-~lp~dvg~lt~lqil~lrdndll-~lpkeig~lt~lrelhiqgn  183 (264)
T KOG0617|consen  106 VLDLTYNNLNENSLPGNFFYMTTLRALYLGDNDFE-ILPPDVGKLTNLQILSLRDNDLL-SLPKEIGDLTRLRELHIQGN  183 (264)
T ss_pred             hhhccccccccccCCcchhHHHHHHHHHhcCCCcc-cCChhhhhhcceeEEeeccCchh-hCcHHHHHHHHHHHHhcccc
Confidence            7777776553 345555666677777777777766 56666777777777777776655 34555666666777777666


Q ss_pred             ccc
Q 037302          198 SLT  200 (408)
Q Consensus       198 ~~~  200 (408)
                      .+.
T Consensus       184 rl~  186 (264)
T KOG0617|consen  184 RLT  186 (264)
T ss_pred             eee
Confidence            654

>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]

Probab=99.40  E-value=3.9e-15  Score=113.92  Aligned_cols=157  Identities=32%  Similarity=0.485  Sum_probs=138.4

Q ss_pred             cCCCCCCcEEEcCCCccccccchhhccCCCCcEEeCCCCcCCCCCcccccCCCCCcEEeCCCceecccCcccccCCCCCc
Q 037302           15 FTCFPNLESIIIPYTLLSGRIPSEIGALSKLEELALPYNSLTGTIPAEIGSLRNLVELDLSNNILNGSIPLEFGNLKDLD   94 (408)
Q Consensus        15 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~   94 (408)
                      +-+++++++|.++.+.+. .+|..++.+.+|+.|.+.+++++ .+|..++.+++|+.|++.-+++. ..|..|+.+|-|+
T Consensus        29 Lf~~s~ITrLtLSHNKl~-~vppnia~l~nlevln~~nnqie-~lp~~issl~klr~lnvgmnrl~-~lprgfgs~p~le  105 (264)
T KOG0617|consen   29 LFNMSNITRLTLSHNKLT-VVPPNIAELKNLEVLNLSNNQIE-ELPTSISSLPKLRILNVGMNRLN-ILPRGFGSFPALE  105 (264)
T ss_pred             ccchhhhhhhhcccCcee-ecCCcHHHhhhhhhhhcccchhh-hcChhhhhchhhhheecchhhhh-cCccccCCCchhh
Confidence            445678899999999988 56667999999999999999998 78889999999999999988887 8899999999999


Q ss_pred             eeecCCcccc-ccCCCcCCCCCCCCEEEcCCCeecccCcccccCCCCCceEeccCCcccCcCchhhccCCCCCEEEcCCC
Q 037302           95 ALRLRGNKLD-GLIPSSIGNLTNLTHLDLSLNQLSGRLPQEVGNLKNLLSLFLDNNNLTGPIPSTLYHLNQLSNLYLAYN  173 (408)
Q Consensus        95 ~L~l~~~~i~-~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~  173 (408)
                      .|++..+++. ...|..|..++.|+.|.++.|.+. ..|..++.+.+|+.|.+.++.+- .++..++.+..|++|++.+|
T Consensus       106 vldltynnl~e~~lpgnff~m~tlralyl~dndfe-~lp~dvg~lt~lqil~lrdndll-~lpkeig~lt~lrelhiqgn  183 (264)
T KOG0617|consen  106 VLDLTYNNLNENSLPGNFFYMTTLRALYLGDNDFE-ILPPDVGKLTNLQILSLRDNDLL-SLPKEIGDLTRLRELHIQGN  183 (264)
T ss_pred             hhhccccccccccCCcchhHHHHHHHHHhcCCCcc-cCChhhhhhcceeEEeeccCchh-hCcHHHHHHHHHHHHhcccc
Confidence            9999988764 557777888999999999999988 77888999999999999999876 67888999999999999999


Q ss_pred             cCC
Q 037302          174 NLV  176 (408)
Q Consensus       174 ~~~  176 (408)
                      .+.
T Consensus       184 rl~  186 (264)
T KOG0617|consen  184 RLT  186 (264)
T ss_pred             eee
Confidence            876

>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]

Probab=99.27  E-value=8.7e-14  Score=118.45  Aligned_cols=246  Identities=19%  Similarity=0.204  Sum_probs=153.8

Q ss_pred             CCCCCCCCEEEcCCCeecccCc----ccccCCCCCceEeccCCccc---C-------cCchhhccCCCCCEEEcCCCcCC
Q 037302          111 IGNLTNLTHLDLSLNQLSGRLP----QEVGNLKNLLSLFLDNNNLT---G-------PIPSTLYHLNQLSNLYLAYNNLV  176 (408)
Q Consensus       111 l~~l~~L~~L~l~~~~~~~~~~----~~~~~l~~L~~L~l~~~~~~---~-------~~~~~~~~~~~L~~L~l~~~~~~  176 (408)
                      +..+..+..+++++|.+.....    ..++..+.|+..++++-...   .       .+...+..+|+|+++++++|-+.
T Consensus        26 ~~~~~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDNA~G  105 (382)
T KOG1909|consen   26 LEPMDSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDMFTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDNAFG  105 (382)
T ss_pred             hcccCceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCCceeEeeccccccC
Confidence            4556788888888888764333    33455677777777653211   1       12233445667777777777654


Q ss_pred             CCCCc----cccCCCCCCEEEecCcccccccCcccccccccCeEEccCCcCCCCCCcccCCCCCccEEEccCCcccccC-
Q 037302          177 GPLPK----EVGNMKNLDSLLLNRNSLTGPIPSTIGYLNLGGKLDLSHNRLDSPIPPTIGNLTNLTSLDLSSNQLSGLL-  251 (408)
Q Consensus       177 ~~~~~----~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~-  251 (408)
                      ...+.    .+..+..|++|.+.+|.+.......++  ..|..+.         .....+..+.|+.+..+.|.+.+.. 
T Consensus       106 ~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~--~al~~l~---------~~kk~~~~~~Lrv~i~~rNrlen~ga  174 (382)
T KOG1909|consen  106 PKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLG--RALFELA---------VNKKAASKPKLRVFICGRNRLENGGA  174 (382)
T ss_pred             ccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHH--HHHHHHH---------HHhccCCCcceEEEEeeccccccccH
Confidence            43322    234456666666666655421111110  0111111         0112334578888888888766433 


Q ss_pred             ---CccccCCCCCCEEeCCCCccccc----CCccccCCCCCcEEeCCCCccccC----CCcCCcCCCCCcEEEcCCCccC
Q 037302          252 ---PREVGNLKYLDSLSLDGNNLIGS----IPPTIGYLTNLTSLNLGYNQLSSS----IPPELMNCSQLQNLVLSHNTLS  320 (408)
Q Consensus       252 ---~~~~~~~~~L~~L~l~~~~~~~~----~~~~~~~~~~L~~L~l~~~~~~~~----~~~~~~~~~~L~~L~l~~~~~~  320 (408)
                         ...|...+.|+++.+.++.+...    ....+.+|++|+.|++.+|-++..    ....+..+++|++|++++|.+.
T Consensus       175 ~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~dcll~  254 (382)
T KOG1909|consen  175 TALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLGDCLLE  254 (382)
T ss_pred             HHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeecccccccc
Confidence               34456678899999988887543    234567889999999999887643    3345667888999999999876


Q ss_pred             CcCCccc-----ccCCCccEEEcCCcccccc----CCcCCCCCCCccEEeCCCCcc
Q 037302          321 GIVPPEI-----GNLTHLRQLDLSHNFINGT----IPSQLGYIPNISAVDLSKNNL  367 (408)
Q Consensus       321 ~~~~~~~-----~~~~~L~~L~l~~~~~~~~----~~~~~~~~~~L~~L~l~~~~l  367 (408)
                      .....++     ...|+|+.+.+.+|.++..    +..++...+.|+.|++++|.+
T Consensus       255 ~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~l  310 (382)
T KOG1909|consen  255 NEGAIAFVDALKESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGNRL  310 (382)
T ss_pred             cccHHHHHHHHhccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCcccc
Confidence            5444333     2468999999999988853    233445578899999999988

>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]

Probab=99.20  E-value=7.2e-13  Score=112.94  Aligned_cols=233  Identities=21%  Similarity=0.229  Sum_probs=148.5

Q ss_pred             ccCCCCCceeecCCccccc----cCCCcCCCCCCCCEEEcCCC---eecccCc-------ccccCCCCCceEeccCCccc
Q 037302           87 FGNLKDLDALRLRGNKLDG----LIPSSIGNLTNLTHLDLSLN---QLSGRLP-------QEVGNLKNLLSLFLDNNNLT  152 (408)
Q Consensus        87 ~~~l~~L~~L~l~~~~i~~----~~~~~l~~l~~L~~L~l~~~---~~~~~~~-------~~~~~l~~L~~L~l~~~~~~  152 (408)
                      ......++++++++|.+..    .....+.+.++|+..++++-   +.....+       .++..+|+|+++++++|.+.
T Consensus        26 ~~~~~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDNA~G  105 (382)
T KOG1909|consen   26 LEPMDSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDMFTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDNAFG  105 (382)
T ss_pred             hcccCceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCCceeEeeccccccC
Confidence            4567889999999998742    23344667789999988763   2222223       34567889999999999876


Q ss_pred             CcCch----hhccCCCCCEEEcCCCcCCCCCC-------------ccccCCCCCCEEEecCcccccc----cCccccccc
Q 037302          153 GPIPS----TLYHLNQLSNLYLAYNNLVGPLP-------------KEVGNMKNLDSLLLNRNSLTGP----IPSTIGYLN  211 (408)
Q Consensus       153 ~~~~~----~~~~~~~L~~L~l~~~~~~~~~~-------------~~~~~~~~L~~L~l~~~~~~~~----~~~~~~~~~  211 (408)
                      ...+.    .+.++..|++|.+.+|.+.....             ......+.|+++...+|.+.+.    +...+...+
T Consensus       106 ~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrlen~ga~~~A~~~~~~~  185 (382)
T KOG1909|consen  106 PKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNRLENGGATALAEAFQSHP  185 (382)
T ss_pred             ccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeeccccccccHHHHHHHHHhcc
Confidence            44333    45678999999999998753221             2234467788888877776432    234556667


Q ss_pred             ccCeEEccCCcCCCCC----CcccCCCCCccEEEccCCccccc----CCccccCCCCCCEEeCCCCcccccCCcc-----
Q 037302          212 LGGKLDLSHNRLDSPI----PPTIGNLTNLTSLDLSSNQLSGL----LPREVGNLKYLDSLSLDGNNLIGSIPPT-----  278 (408)
Q Consensus       212 ~L~~l~l~~~~~~~~~----~~~l~~~~~L~~L~l~~~~~~~~----~~~~~~~~~~L~~L~l~~~~~~~~~~~~-----  278 (408)
                      .++.+.+..+.+....    ...+..|++|+.|++.+|.++..    ....++.+++|+++++++|.+...-..+     
T Consensus       186 ~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~dcll~~~Ga~a~~~al  265 (382)
T KOG1909|consen  186 TLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLGDCLLENEGAIAFVDAL  265 (382)
T ss_pred             ccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeecccccccccccHHHHHHHH
Confidence            7888888777664322    23456677777777777766533    2334556677777777777665332211     


Q ss_pred             ccCCCCCcEEeCCCCccccCCC----cCCcCCCCCcEEEcCCCcc
Q 037302          279 IGYLTNLTSLNLGYNQLSSSIP----PELMNCSQLQNLVLSHNTL  319 (408)
Q Consensus       279 ~~~~~~L~~L~l~~~~~~~~~~----~~~~~~~~L~~L~l~~~~~  319 (408)
                      -...|+|+++.+.+|.|+....    ..+...|.|+.|++++|++
T Consensus       266 ~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~l  310 (382)
T KOG1909|consen  266 KESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGNRL  310 (382)
T ss_pred             hccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCcccc
Confidence            1235677777777776653211    1222346666666666666

>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]

Probab=99.19  E-value=1.1e-11  Score=123.29  Aligned_cols=135  Identities=26%  Similarity=0.292  Sum_probs=99.0

Q ss_pred             cccCCCCCCcEEEcCCCccccccchhhccCCCCcEEeCCCCc--CCCCCcccccCCCCCcEEeCCCceecccCcccccCC
Q 037302           13 LNFTCFPNLESIIIPYTLLSGRIPSEIGALSKLEELALPYNS--LTGTIPAEIGSLRNLVELDLSNNILNGSIPLEFGNL   90 (408)
Q Consensus        13 ~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~--~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l   90 (408)
                      ....+....+++.+.++.+.. .+. -..++.|++|-+.++.  +.......|..++.|++|++++|.-...+|..++.+
T Consensus       517 ~~~~~~~~~rr~s~~~~~~~~-~~~-~~~~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~L  594 (889)
T KOG4658|consen  517 PQVKSWNSVRRMSLMNNKIEH-IAG-SSENPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGEL  594 (889)
T ss_pred             ccccchhheeEEEEeccchhh-ccC-CCCCCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhh
Confidence            344455667777777776642 222 2445688898888875  444555557889999999999877666888888999


Q ss_pred             CCCceeecCCccccccCCCcCCCCCCCCEEEcCCCeecccCcccccCCCCCceEeccCCc
Q 037302           91 KDLDALRLRGNKLDGLIPSSIGNLTNLTHLDLSLNQLSGRLPQEVGNLKNLLSLFLDNNN  150 (408)
Q Consensus        91 ~~L~~L~l~~~~i~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~  150 (408)
                      .+||+|+++++.+. ..|..+.++..|.+|++..+......+.....+++|++|.+....
T Consensus       595 i~LryL~L~~t~I~-~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~  653 (889)
T KOG4658|consen  595 VHLRYLDLSDTGIS-HLPSGLGNLKKLIYLNLEVTGRLESIPGILLELQSLRVLRLPRSA  653 (889)
T ss_pred             hhhhcccccCCCcc-ccchHHHHHHhhheeccccccccccccchhhhcccccEEEeeccc
Confidence            99999999998887 667778888899999988876543445666668888888887554

>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]

Probab=99.19  E-value=3.5e-12  Score=111.88  Aligned_cols=207  Identities=24%  Similarity=0.236  Sum_probs=90.0

Q ss_pred             CCCCCEEEcCCCcCCCCCC-ccccCCCCCCEEEecCccccc--ccCcccccccccCeEEccCCcCCCCCCcc-cCCCCCc
Q 037302          162 LNQLSNLYLAYNNLVGPLP-KEVGNMKNLDSLLLNRNSLTG--PIPSTIGYLNLGGKLDLSHNRLDSPIPPT-IGNLTNL  237 (408)
Q Consensus       162 ~~~L~~L~l~~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~--~~~~~~~~~~~L~~l~l~~~~~~~~~~~~-l~~~~~L  237 (408)
                      +.+|+.+.+.++.+..... .....+++++.|+++.|-+..  ........+|+|+.|+++.|++....... -..+++|
T Consensus       120 ~kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~~l  199 (505)
T KOG3207|consen  120 LKKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLSHL  199 (505)
T ss_pred             HHhhhheeecCccccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhhhh
Confidence            3344444444444332211 233444555555555443321  11222334455555555554433211110 1133555


Q ss_pred             cEEEccCCcccccCC-ccccCCCCCCEEeCCCCcccccCCccccCCCCCcEEeCCCCccccCC-CcCCcCCCCCcEEEcC
Q 037302          238 TSLDLSSNQLSGLLP-REVGNLKYLDSLSLDGNNLIGSIPPTIGYLTNLTSLNLGYNQLSSSI-PPELMNCSQLQNLVLS  315 (408)
Q Consensus       238 ~~L~l~~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~-~~~~~~~~~L~~L~l~  315 (408)
                      +.|.+++|.++.... .....+|+|+.|.+.+|...........-++.|+.|+|++|++.... ......+|.|+.|+++
T Consensus       200 K~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~~~~~~~~~l~~L~~Lnls  279 (505)
T KOG3207|consen  200 KQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLIDFDQGYKVGTLPGLNQLNLS  279 (505)
T ss_pred             heEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCcccccccccccccccchhhhhcc
Confidence            556666655542211 12234556666666555321111122233455666666665544221 1223445556666666


Q ss_pred             CCccCCcCCccc------ccCCCccEEEcCCcccccc-CCcCCCCCCCccEEeCCCCccC
Q 037302          316 HNTLSGIVPPEI------GNLTHLRQLDLSHNFINGT-IPSQLGYIPNISAVDLSKNNLS  368 (408)
Q Consensus       316 ~~~~~~~~~~~~------~~~~~L~~L~l~~~~~~~~-~~~~~~~~~~L~~L~l~~~~l~  368 (408)
                      .|.+.++.....      ..+++|+.|++..|++.+- ....++..++|+.+.+.+|++.
T Consensus       280 ~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~~w~sl~~l~~l~nlk~l~~~~n~ln  339 (505)
T KOG3207|consen  280 STGIASIAEPDVESLDKTHTFPKLEYLNISENNIRDWRSLNHLRTLENLKHLRITLNYLN  339 (505)
T ss_pred             ccCcchhcCCCccchhhhcccccceeeecccCccccccccchhhccchhhhhhccccccc
Confidence            655543322221      3445666666666655421 1123444555555555555553

>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]

Probab=99.11  E-value=4.2e-11  Score=119.16  Aligned_cols=182  Identities=26%  Similarity=0.306  Sum_probs=107.5

Q ss_pred             CCCCCCcEEEcCCCc--cccccchhhccCCCCcEEeCCCCcCCCCCcccccCCCCCcEEeCCCceecccCcccccCCCCC
Q 037302           16 TCFPNLESIIIPYTL--LSGRIPSEIGALSKLEELALPYNSLTGTIPAEIGSLRNLVELDLSNNILNGSIPLEFGNLKDL   93 (408)
Q Consensus        16 ~~~~~L~~L~l~~~~--~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L   93 (408)
                      .++|.|++|-+.++.  +.......|..++.|+.|++++|.--..+|..++.+-+|++|+++++.+. .+|..+.++..|
T Consensus       542 ~~~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t~I~-~LP~~l~~Lk~L  620 (889)
T KOG4658|consen  542 SENPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDTGIS-HLPSGLGNLKKL  620 (889)
T ss_pred             CCCCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccCCCcc-ccchHHHHHHhh
Confidence            344578888877764  33223334677888888888877655577888888888888888888877 778888888888


Q ss_pred             ceeecCCccccccCCCcCCCCCCCCEEEcCCCeec--ccCcccccCCCCCceEeccCCcccCcCchhhccCCCCCE----
Q 037302           94 DALRLRGNKLDGLIPSSIGNLTNLTHLDLSLNQLS--GRLPQEVGNLKNLLSLFLDNNNLTGPIPSTLYHLNQLSN----  167 (408)
Q Consensus        94 ~~L~l~~~~i~~~~~~~l~~l~~L~~L~l~~~~~~--~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~----  167 (408)
                      .+|++..+......+.....+++|++|.+......  ......+..+.+|+.+.+.....  .....+..++.|..    
T Consensus       621 ~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~~~~~~~~l~el~~Le~L~~ls~~~~s~--~~~e~l~~~~~L~~~~~~  698 (889)
T KOG4658|consen  621 IYLNLEVTGRLESIPGILLELQSLRVLRLPRSALSNDKLLLKELENLEHLENLSITISSV--LLLEDLLGMTRLRSLLQS  698 (889)
T ss_pred             heeccccccccccccchhhhcccccEEEeeccccccchhhHHhhhcccchhhheeecchh--HhHhhhhhhHHHHHHhHh
Confidence            88888876543344555666888888887665421  11222334444444444432221  11111222333332    


Q ss_pred             EEcCCCcCCCCCCccccCCCCCCEEEecCccccc
Q 037302          168 LYLAYNNLVGPLPKEVGNMKNLDSLLLNRNSLTG  201 (408)
Q Consensus       168 L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~  201 (408)
                      +.+..+... .....+..+.+|++|.+.++.+.+
T Consensus       699 l~~~~~~~~-~~~~~~~~l~~L~~L~i~~~~~~e  731 (889)
T KOG4658|consen  699 LSIEGCSKR-TLISSLGSLGNLEELSILDCGISE  731 (889)
T ss_pred             hhhcccccc-eeecccccccCcceEEEEcCCCch
Confidence            222222211 223345667778888887777653

>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]

Probab=99.06  E-value=1.5e-11  Score=107.95  Aligned_cols=207  Identities=25%  Similarity=0.241  Sum_probs=147.6

Q ss_pred             cCCCCCCEEEecCcccccccC-cccccccccCeEEccCCcCCCC--CCcccCCCCCccEEEccCCcccccC-CccccCCC
Q 037302          184 GNMKNLDSLLLNRNSLTGPIP-STIGYLNLGGKLDLSHNRLDSP--IPPTIGNLTNLTSLDLSSNQLSGLL-PREVGNLK  259 (408)
Q Consensus       184 ~~~~~L~~L~l~~~~~~~~~~-~~~~~~~~L~~l~l~~~~~~~~--~~~~l~~~~~L~~L~l~~~~~~~~~-~~~~~~~~  259 (408)
                      +++.+|+.+.++++.+..... .....++.++.|+++.+-+...  .......+|+|+.|+++.|.+.... ...-..++
T Consensus       118 sn~kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~  197 (505)
T KOG3207|consen  118 SNLKKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLS  197 (505)
T ss_pred             hhHHhhhheeecCccccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhh
Confidence            457788999999887753322 4667899999999999865543  2234567899999999998665221 11122568


Q ss_pred             CCCEEeCCCCccccc-CCccccCCCCCcEEeCCCCccccCCCcCCcCCCCCcEEEcCCCccCCcC-CcccccCCCccEEE
Q 037302          260 YLDSLSLDGNNLIGS-IPPTIGYLTNLTSLNLGYNQLSSSIPPELMNCSQLQNLVLSHNTLSGIV-PPEIGNLTHLRQLD  337 (408)
Q Consensus       260 ~L~~L~l~~~~~~~~-~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~-~~~~~~~~~L~~L~  337 (408)
                      +|+.|.+++|++.-. +......+|+|+.|++..|..-.........+..|++|+|++|.+.... ......++.|+.|.
T Consensus       198 ~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~~~~~~~~~l~~L~~Ln  277 (505)
T KOG3207|consen  198 HLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLIDFDQGYKVGTLPGLNQLN  277 (505)
T ss_pred             hhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCcccccccccccccccchhhhh
Confidence            899999999998632 3344668999999999999532233333445678999999999875332 24556789999999


Q ss_pred             cCCcccccc-CCcC-----CCCCCCccEEeCCCCccCCcC----CccccCCCeEEccCCccCC
Q 037302          338 LSHNFINGT-IPSQ-----LGYIPNISAVDLSKNNLSGVV----PASVRIIPKLIVSENNLEL  390 (408)
Q Consensus       338 l~~~~~~~~-~~~~-----~~~~~~L~~L~l~~~~l~~~~----~~~~~~l~~l~l~~n~~~~  390 (408)
                      ++.|.+.+. .|.+     ...+++|++|++..|++..+.    -+...+++.+.+..|+++.
T Consensus       278 ls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~~w~sl~~l~~l~nlk~l~~~~n~ln~  340 (505)
T KOG3207|consen  278 LSSTGIASIAEPDVESLDKTHTFPKLEYLNISENNIRDWRSLNHLRTLENLKHLRITLNYLNK  340 (505)
T ss_pred             ccccCcchhcCCCccchhhhcccccceeeecccCccccccccchhhccchhhhhhcccccccc
Confidence            999999864 3333     346799999999999996553    2445566677777887753

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=99.06  E-value=6.6e-11  Score=94.55  Aligned_cols=124  Identities=30%  Similarity=0.409  Sum_probs=43.8

Q ss_pred             CCCCccEEEccCCcccccCCcccc-CCCCCCEEeCCCCcccccCCccccCCCCCcEEeCCCCccccCCCcCC-cCCCCCc
Q 037302          233 NLTNLTSLDLSSNQLSGLLPREVG-NLKYLDSLSLDGNNLIGSIPPTIGYLTNLTSLNLGYNQLSSSIPPEL-MNCSQLQ  310 (408)
Q Consensus       233 ~~~~L~~L~l~~~~~~~~~~~~~~-~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~-~~~~~L~  310 (408)
                      ++.++++|+++++.+...  ..+. .+.+|+.|++++|.+...  ..+..+++|++|++++|.++.. ...+ ..+|+|+
T Consensus        17 n~~~~~~L~L~~n~I~~I--e~L~~~l~~L~~L~Ls~N~I~~l--~~l~~L~~L~~L~L~~N~I~~i-~~~l~~~lp~L~   91 (175)
T PF14580_consen   17 NPVKLRELNLRGNQISTI--ENLGATLDKLEVLDLSNNQITKL--EGLPGLPRLKTLDLSNNRISSI-SEGLDKNLPNLQ   91 (175)
T ss_dssp             ---------------------S--TT-TT--EEE-TTS--S----TT----TT--EEE--SS---S--CHHHHHH-TT--
T ss_pred             cccccccccccccccccc--cchhhhhcCCCEEECCCCCCccc--cCccChhhhhhcccCCCCCCcc-ccchHHhCCcCC
Confidence            345677777777776632  2233 456778888888877643  3466677888888888888743 2233 3577888


Q ss_pred             EEEcCCCccCCcCC-cccccCCCccEEEcCCccccccCC---cCCCCCCCccEEe
Q 037302          311 NLVLSHNTLSGIVP-PEIGNLTHLRQLDLSHNFINGTIP---SQLGYIPNISAVD  361 (408)
Q Consensus       311 ~L~l~~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~~~~---~~~~~~~~L~~L~  361 (408)
                      +|.+++|++.+... ..+..+++|+.|++.+|++++...   ..+..+|+|+.|+
T Consensus        92 ~L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~~~~~YR~~vi~~lP~Lk~LD  146 (175)
T PF14580_consen   92 ELYLSNNKISDLNELEPLSSLPKLRVLSLEGNPVCEKKNYRLFVIYKLPSLKVLD  146 (175)
T ss_dssp             EEE-TTS---SCCCCGGGGG-TT--EEE-TT-GGGGSTTHHHHHHHH-TT-SEET
T ss_pred             EEECcCCcCCChHHhHHHHcCCCcceeeccCCcccchhhHHHHHHHHcChhheeC
Confidence            88888887765332 455677888888888888874411   1344578888765

>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]

Probab=99.05  E-value=6.2e-11  Score=99.34  Aligned_cols=133  Identities=27%  Similarity=0.352  Sum_probs=102.1

Q ss_pred             CCCCccEEEccCCcccccCCccccCCCCCCEEeCCCCcccccCCccccCCCCCcEEeCCCCccccCCCcCCcCCCCCcEE
Q 037302          233 NLTNLTSLDLSSNQLSGLLPREVGNLKYLDSLSLDGNNLIGSIPPTIGYLTNLTSLNLGYNQLSSSIPPELMNCSQLQNL  312 (408)
Q Consensus       233 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L  312 (408)
                      ....|+++++++|.+. .+.....-.|.++.|++++|.+...  ..+..+++|..|++++|.++. ...+-..+.++++|
T Consensus       282 TWq~LtelDLS~N~I~-~iDESvKL~Pkir~L~lS~N~i~~v--~nLa~L~~L~~LDLS~N~Ls~-~~Gwh~KLGNIKtL  357 (490)
T KOG1259|consen  282 TWQELTELDLSGNLIT-QIDESVKLAPKLRRLILSQNRIRTV--QNLAELPQLQLLDLSGNLLAE-CVGWHLKLGNIKTL  357 (490)
T ss_pred             hHhhhhhccccccchh-hhhhhhhhccceeEEeccccceeee--hhhhhcccceEeecccchhHh-hhhhHhhhcCEeee
Confidence            3467888999998876 5556667778999999999988743  337788899999999988773 33333456788999


Q ss_pred             EcCCCccCCcCCcccccCCCccEEEcCCcccccc-CCcCCCCCCCccEEeCCCCccCCcC
Q 037302          313 VLSHNTLSGIVPPEIGNLTHLRQLDLSHNFINGT-IPSQLGYIPNISAVDLSKNNLSGVV  371 (408)
Q Consensus       313 ~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~-~~~~~~~~~~L~~L~l~~~~l~~~~  371 (408)
                      .+.+|.+...  ..+.++-+|..||+++|++.+. ....++++|-|+.+.+.+|++.++.
T Consensus       358 ~La~N~iE~L--SGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl~~~v  415 (490)
T KOG1259|consen  358 KLAQNKIETL--SGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNPLAGSV  415 (490)
T ss_pred             ehhhhhHhhh--hhhHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCCccccc
Confidence            9999988633  4567778899999999988854 2356788899999999999998753

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=98.99  E-value=4.7e-10  Score=89.69  Aligned_cols=106  Identities=29%  Similarity=0.405  Sum_probs=24.0

Q ss_pred             CCCceeecCCccccccCCCcCC-CCCCCCEEEcCCCeecccCcccccCCCCCceEeccCCcccCcCchhhccCCCCCEEE
Q 037302           91 KDLDALRLRGNKLDGLIPSSIG-NLTNLTHLDLSLNQLSGRLPQEVGNLKNLLSLFLDNNNLTGPIPSTLYHLNQLSNLY  169 (408)
Q Consensus        91 ~~L~~L~l~~~~i~~~~~~~l~-~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~  169 (408)
                      .++++|++.++.|+.+  +.+. .+.+|+.|++++|.+...  ..+..++.|++|++++|.++.........+|+|++|.
T Consensus        19 ~~~~~L~L~~n~I~~I--e~L~~~l~~L~~L~Ls~N~I~~l--~~l~~L~~L~~L~L~~N~I~~i~~~l~~~lp~L~~L~   94 (175)
T PF14580_consen   19 VKLRELNLRGNQISTI--ENLGATLDKLEVLDLSNNQITKL--EGLPGLPRLKTLDLSNNRISSISEGLDKNLPNLQELY   94 (175)
T ss_dssp             -------------------S--TT-TT--EEE-TTS--S----TT----TT--EEE--SS---S-CHHHHHH-TT--EEE
T ss_pred             cccccccccccccccc--cchhhhhcCCCEEECCCCCCccc--cCccChhhhhhcccCCCCCCccccchHHhCCcCCEEE
Confidence            3445555555544433  2232 244555555555555422  2344455555555555555432221112345555555


Q ss_pred             cCCCcCCCC-CCccccCCCCCCEEEecCcccc
Q 037302          170 LAYNNLVGP-LPKEVGNMKNLDSLLLNRNSLT  200 (408)
Q Consensus       170 l~~~~~~~~-~~~~~~~~~~L~~L~l~~~~~~  200 (408)
                      +++|.+... ....++.+++|++|++.+|++.
T Consensus        95 L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~  126 (175)
T PF14580_consen   95 LSNNKISDLNELEPLSSLPKLRVLSLEGNPVC  126 (175)
T ss_dssp             -TTS---SCCCCGGGGG-TT--EEE-TT-GGG
T ss_pred             CcCCcCCChHHhHHHHcCCCcceeeccCCccc
Confidence            555554321 1123444555555555555543

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=98.91  E-value=1.3e-09  Score=71.58  Aligned_cols=61  Identities=41%  Similarity=0.628  Sum_probs=39.8

Q ss_pred             CCCcEEEcCCCccCCcCCcccccCCCccEEEcCCccccccCCcCCCCCCCccEEeCCCCcc
Q 037302          307 SQLQNLVLSHNTLSGIVPPEIGNLTHLRQLDLSHNFINGTIPSQLGYIPNISAVDLSKNNL  367 (408)
Q Consensus       307 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l  367 (408)
                      |+|++|++++|++..+....|..+++|++|++++|.++...+.+|..+++|+.|++++|++
T Consensus         1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l   61 (61)
T PF13855_consen    1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL   61 (61)
T ss_dssp             TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred             CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence            4566666666666655556666666666666666666655556666666666666666654

...

>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]

Probab=98.85  E-value=9.1e-10  Score=92.45  Aligned_cols=130  Identities=25%  Similarity=0.265  Sum_probs=101.0

Q ss_pred             ccCCCCCCEEeCCCCcccccCCccccCCCCCcEEeCCCCccccCCCcCCcCCCCCcEEEcCCCccCCcCCcccccCCCcc
Q 037302          255 VGNLKYLDSLSLDGNNLIGSIPPTIGYLTNLTSLNLGYNQLSSSIPPELMNCSQLQNLVLSHNTLSGIVPPEIGNLTHLR  334 (408)
Q Consensus       255 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~  334 (408)
                      +..+..|+++++++|.+. .+-..+.-.|.++.|+++.|.+.....  +..+++|+.|++++|.++. ...+=.++.+++
T Consensus       280 ~dTWq~LtelDLS~N~I~-~iDESvKL~Pkir~L~lS~N~i~~v~n--La~L~~L~~LDLS~N~Ls~-~~Gwh~KLGNIK  355 (490)
T KOG1259|consen  280 ADTWQELTELDLSGNLIT-QIDESVKLAPKLRRLILSQNRIRTVQN--LAELPQLQLLDLSGNLLAE-CVGWHLKLGNIK  355 (490)
T ss_pred             cchHhhhhhccccccchh-hhhhhhhhccceeEEeccccceeeehh--hhhcccceEeecccchhHh-hhhhHhhhcCEe
Confidence            344578999999999887 344566778999999999999985433  6778999999999999874 345556788999


Q ss_pred             EEEcCCccccccCCcCCCCCCCccEEeCCCCccCCcCC-ccccC---CCeEEccCCccCC
Q 037302          335 QLDLSHNFINGTIPSQLGYIPNISAVDLSKNNLSGVVP-ASVRI---IPKLIVSENNLEL  390 (408)
Q Consensus       335 ~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~-~~~~~---l~~l~l~~n~~~~  390 (408)
                      +|.+++|.+.+.  ..++++=+|..|++++|+|..... +.+++   ++.+.+.+|++.+
T Consensus       356 tL~La~N~iE~L--SGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl~~  413 (490)
T KOG1259|consen  356 TLKLAQNKIETL--SGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNPLAG  413 (490)
T ss_pred             eeehhhhhHhhh--hhhHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCCccc
Confidence            999999988643  456677889999999999986643 33443   4488999999864

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=98.84  E-value=3e-09  Score=69.84  Aligned_cols=61  Identities=43%  Similarity=0.591  Sum_probs=49.1

Q ss_pred             CCCcEEeCCCCccccCCCcCCcCCCCCcEEEcCCCccCCcCCcccccCCCccEEEcCCccc
Q 037302          283 TNLTSLNLGYNQLSSSIPPELMNCSQLQNLVLSHNTLSGIVPPEIGNLTHLRQLDLSHNFI  343 (408)
Q Consensus       283 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~  343 (408)
                      |+|++|++++|.+....+..|.++++|++|++++|++..+.+.+|.++++|++|++++|++
T Consensus         1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l   61 (61)
T PF13855_consen    1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL   61 (61)
T ss_dssp             TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred             CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence            5678888888888877767788888888888888888877777888888888888888864

...

>PLN03150 hypothetical protein; Provisional

Probab=98.83  E-value=8.1e-09  Score=100.78  Aligned_cols=111  Identities=32%  Similarity=0.494  Sum_probs=95.0

Q ss_pred             CCcEEeCCCCccccCCCcCCcCCCCCcEEEcCCCccCCcCCcccccCCCccEEEcCCccccccCCcCCCCCCCccEEeCC
Q 037302          284 NLTSLNLGYNQLSSSIPPELMNCSQLQNLVLSHNTLSGIVPPEIGNLTHLRQLDLSHNFINGTIPSQLGYIPNISAVDLS  363 (408)
Q Consensus       284 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~  363 (408)
                      .++.|++++|.+.+..+..+..+++|+.|++++|.+.+..+..+..+++|+.|++++|++++.+|..+..+++|+.|+++
T Consensus       419 ~v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls  498 (623)
T PLN03150        419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLN  498 (623)
T ss_pred             EEEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECc
Confidence            37788999999888888888889999999999999988888888999999999999999998899989999999999999


Q ss_pred             CCccCCcCCccccC----CCeEEccCCccCCCCCC
Q 037302          364 KNNLSGVVPASVRI----IPKLIVSENNLELENST  394 (408)
Q Consensus       364 ~~~l~~~~~~~~~~----l~~l~l~~n~~~~~~~~  394 (408)
                      +|++.+..|..+..    +..+++.+|+..+..|.
T Consensus       499 ~N~l~g~iP~~l~~~~~~~~~l~~~~N~~lc~~p~  533 (623)
T PLN03150        499 GNSLSGRVPAALGGRLLHRASFNFTDNAGLCGIPG  533 (623)
T ss_pred             CCcccccCChHHhhccccCceEEecCCccccCCCC
Confidence            99999998877654    33788888886665553

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]

Probab=98.81  E-value=7.7e-09  Score=96.26  Aligned_cols=200  Identities=41%  Similarity=0.605  Sum_probs=118.7

Q ss_pred             EEEcCCCcCCCCCCccccCCCCCCEEEecCcccccccCcccccc-cccCeEEccCCcCCCCCCcccCCCCCccEEEccCC
Q 037302          167 NLYLAYNNLVGPLPKEVGNMKNLDSLLLNRNSLTGPIPSTIGYL-NLGGKLDLSHNRLDSPIPPTIGNLTNLTSLDLSSN  245 (408)
Q Consensus       167 ~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~-~~L~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~  245 (408)
                      .+....+.+.... ..+...+.++.+.+.++.+.+ .+...... +.++.++++++.+... +..+..+++|+.|++++|
T Consensus        97 ~l~~~~~~~~~~~-~~~~~~~~l~~L~l~~n~i~~-i~~~~~~~~~nL~~L~l~~N~i~~l-~~~~~~l~~L~~L~l~~N  173 (394)
T COG4886          97 SLDLNLNRLRSNI-SELLELTNLTSLDLDNNNITD-IPPLIGLLKSNLKELDLSDNKIESL-PSPLRNLPNLKNLDLSFN  173 (394)
T ss_pred             eeeccccccccCc-hhhhcccceeEEecCCccccc-Cccccccchhhcccccccccchhhh-hhhhhccccccccccCCc
Confidence            4555555542221 223445667777777777663 33333444 2677777777766532 234566777777777777


Q ss_pred             cccccCCccccCCCCCCEEeCCCCcccccCCccccCCCCCcEEeCCCCccccCCCcCCcCCCCCcEEEcCCCccCCcCCc
Q 037302          246 QLSGLLPREVGNLKYLDSLSLDGNNLIGSIPPTIGYLTNLTSLNLGYNQLSSSIPPELMNCSQLQNLVLSHNTLSGIVPP  325 (408)
Q Consensus       246 ~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~  325 (408)
                      .+.+. +...+..+.|+.|+++++.+... +........|+++.+++|.+. ..+..+..+.++..+.+.++++... +.
T Consensus       174 ~l~~l-~~~~~~~~~L~~L~ls~N~i~~l-~~~~~~~~~L~~l~~~~N~~~-~~~~~~~~~~~l~~l~l~~n~~~~~-~~  249 (394)
T COG4886         174 DLSDL-PKLLSNLSNLNNLDLSGNKISDL-PPEIELLSALEELDLSNNSII-ELLSSLSNLKNLSGLELSNNKLEDL-PE  249 (394)
T ss_pred             hhhhh-hhhhhhhhhhhheeccCCccccC-chhhhhhhhhhhhhhcCCcce-ecchhhhhcccccccccCCceeeec-cc
Confidence            76633 22222556777777777776633 222234445777777777533 2334455566666666666666522 45


Q ss_pred             ccccCCCccEEEcCCccccccCCcCCCCCCCccEEeCCCCccCCcCCccc
Q 037302          326 EIGNLTHLRQLDLSHNFINGTIPSQLGYIPNISAVDLSKNNLSGVVPASV  375 (408)
Q Consensus       326 ~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~  375 (408)
                      .+..++++++|++++|++++..+  +....+++.|+++++.+....|...
T Consensus       250 ~~~~l~~l~~L~~s~n~i~~i~~--~~~~~~l~~L~~s~n~~~~~~~~~~  297 (394)
T COG4886         250 SIGNLSNLETLDLSNNQISSISS--LGSLTNLRELDLSGNSLSNALPLIA  297 (394)
T ss_pred             hhccccccceecccccccccccc--ccccCccCEEeccCccccccchhhh
Confidence            55666677777777777774433  6666777777777777766655443

>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]

Probab=98.79  E-value=3.4e-10  Score=102.87  Aligned_cols=169  Identities=34%  Similarity=0.468  Sum_probs=102.1

Q ss_pred             EEEecCcccccccCcccccccccCeEEccCCcCCCCCCcccCCCCCccEEEccCCcccccCCccccCCCCCCEEeCCCCc
Q 037302          191 SLLLNRNSLTGPIPSTIGYLNLGGKLDLSHNRLDSPIPPTIGNLTNLTSLDLSSNQLSGLLPREVGNLKYLDSLSLDGNN  270 (408)
Q Consensus       191 ~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~  270 (408)
                      ..+++.|.+. ..+..++.+..|+.+.+..+.+. ..+..+..+..|..++++.|.+. ..+..++.++ |+.|.+++++
T Consensus        79 ~aDlsrNR~~-elp~~~~~f~~Le~liLy~n~~r-~ip~~i~~L~~lt~l~ls~NqlS-~lp~~lC~lp-Lkvli~sNNk  154 (722)
T KOG0532|consen   79 FADLSRNRFS-ELPEEACAFVSLESLILYHNCIR-TIPEAICNLEALTFLDLSSNQLS-HLPDGLCDLP-LKVLIVSNNK  154 (722)
T ss_pred             hhhccccccc-cCchHHHHHHHHHHHHHHhccce-ecchhhhhhhHHHHhhhccchhh-cCChhhhcCc-ceeEEEecCc
Confidence            3445555554 34455556666666666665554 34555666666666777666655 3333343332 6666666666


Q ss_pred             ccccCCccccCCCCCcEEeCCCCccccCCCcCCcCCCCCcEEEcCCCccCCcCCcccccCCCccEEEcCCccccccCCcC
Q 037302          271 LIGSIPPTIGYLTNLTSLNLGYNQLSSSIPPELMNCSQLQNLVLSHNTLSGIVPPEIGNLTHLRQLDLSHNFINGTIPSQ  350 (408)
Q Consensus       271 ~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~  350 (408)
                      +. ..+..++..++|..|+.+.|++- ..+..+.++.+|+.|++..|++. ..++.+. .=.|..||++.|.+. .+|..
T Consensus       155 l~-~lp~~ig~~~tl~~ld~s~nei~-slpsql~~l~slr~l~vrRn~l~-~lp~El~-~LpLi~lDfScNkis-~iPv~  229 (722)
T KOG0532|consen  155 LT-SLPEEIGLLPTLAHLDVSKNEIQ-SLPSQLGYLTSLRDLNVRRNHLE-DLPEELC-SLPLIRLDFSCNKIS-YLPVD  229 (722)
T ss_pred             cc-cCCcccccchhHHHhhhhhhhhh-hchHHhhhHHHHHHHHHhhhhhh-hCCHHHh-CCceeeeecccCcee-ecchh
Confidence            65 34444556667777777777666 44555666667777777777665 3344444 235667777777776 66667


Q ss_pred             CCCCCCccEEeCCCCccC
Q 037302          351 LGYIPNISAVDLSKNNLS  368 (408)
Q Consensus       351 ~~~~~~L~~L~l~~~~l~  368 (408)
                      |+.|+.|+.|-+.+|+++
T Consensus       230 fr~m~~Lq~l~LenNPLq  247 (722)
T KOG0532|consen  230 FRKMRHLQVLQLENNPLQ  247 (722)
T ss_pred             hhhhhhheeeeeccCCCC
Confidence            777777777777777776

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]

Probab=98.79  E-value=1e-08  Score=95.41  Aligned_cols=201  Identities=38%  Similarity=0.525  Sum_probs=143.4

Q ss_pred             eEeccCCcccCcCchhhccCCCCCEEEcCCCcCCCCCCccccCCC-CCCEEEecCcccccccCcccccccccCeEEccCC
Q 037302          143 SLFLDNNNLTGPIPSTLYHLNQLSNLYLAYNNLVGPLPKEVGNMK-NLDSLLLNRNSLTGPIPSTIGYLNLGGKLDLSHN  221 (408)
Q Consensus       143 ~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~-~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~  221 (408)
                      .+....+.+. .....+...+.++.+.+.++.+... +....... +|+.|+++++.+.. .+.....++.|+.|+++.|
T Consensus        97 ~l~~~~~~~~-~~~~~~~~~~~l~~L~l~~n~i~~i-~~~~~~~~~nL~~L~l~~N~i~~-l~~~~~~l~~L~~L~l~~N  173 (394)
T COG4886          97 SLDLNLNRLR-SNISELLELTNLTSLDLDNNNITDI-PPLIGLLKSNLKELDLSDNKIES-LPSPLRNLPNLKNLDLSFN  173 (394)
T ss_pred             eeeccccccc-cCchhhhcccceeEEecCCcccccC-ccccccchhhcccccccccchhh-hhhhhhccccccccccCCc
Confidence            4666666653 2233444557788888888887643 33345553 89999999988763 3356778899999999998


Q ss_pred             cCCCCCCcccCCCCCccEEEccCCcccccCCccccCCCCCCEEeCCCCcccccCCccccCCCCCcEEeCCCCccccCCCc
Q 037302          222 RLDSPIPPTIGNLTNLTSLDLSSNQLSGLLPREVGNLKYLDSLSLDGNNLIGSIPPTIGYLTNLTSLNLGYNQLSSSIPP  301 (408)
Q Consensus       222 ~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~  301 (408)
                      ++..... .....+.|+.|+++++.+.. .+........|+++.+.++... ..+..+....++..+.+.++++.. .+.
T Consensus       174 ~l~~l~~-~~~~~~~L~~L~ls~N~i~~-l~~~~~~~~~L~~l~~~~N~~~-~~~~~~~~~~~l~~l~l~~n~~~~-~~~  249 (394)
T COG4886         174 DLSDLPK-LLSNLSNLNNLDLSGNKISD-LPPEIELLSALEELDLSNNSII-ELLSSLSNLKNLSGLELSNNKLED-LPE  249 (394)
T ss_pred             hhhhhhh-hhhhhhhhhheeccCCcccc-CchhhhhhhhhhhhhhcCCcce-ecchhhhhcccccccccCCceeee-ccc
Confidence            8875432 23256889999999998873 3433344556899999888533 344556777888888888888773 355


Q ss_pred             CCcCCCCCcEEEcCCCccCCcCCcccccCCCccEEEcCCccccccCCcCCC
Q 037302          302 ELMNCSQLQNLVLSHNTLSGIVPPEIGNLTHLRQLDLSHNFINGTIPSQLG  352 (408)
Q Consensus       302 ~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~  352 (408)
                      .+..++++++|++++|.+..+..  +....+++.|+++++.+....+....
T Consensus       250 ~~~~l~~l~~L~~s~n~i~~i~~--~~~~~~l~~L~~s~n~~~~~~~~~~~  298 (394)
T COG4886         250 SIGNLSNLETLDLSNNQISSISS--LGSLTNLRELDLSGNSLSNALPLIAL  298 (394)
T ss_pred             hhccccccceecccccccccccc--ccccCccCEEeccCccccccchhhhc
Confidence            67778889999999999885544  77888999999999988876665543

>KOG4341 consensus F-box protein containing LRR [General function prediction only]

Probab=98.69  E-value=2e-10  Score=100.43  Aligned_cols=278  Identities=19%  Similarity=0.126  Sum_probs=153.9

Q ss_pred             CCCceeecCCcccccc--CCCcCCCCCCCCEEEcCCCee-cccCcccc-cCCCCCceEeccCCc-ccCcCch-hhccCCC
Q 037302           91 KDLDALRLRGNKLDGL--IPSSIGNLTNLTHLDLSLNQL-SGRLPQEV-GNLKNLLSLFLDNNN-LTGPIPS-TLYHLNQ  164 (408)
Q Consensus        91 ~~L~~L~l~~~~i~~~--~~~~l~~l~~L~~L~l~~~~~-~~~~~~~~-~~l~~L~~L~l~~~~-~~~~~~~-~~~~~~~  164 (408)
                      -.|+.|.++++.-...  .......++++++|.+.++.. ++.....+ ..+++|+++++..|. ++...-. ....|++
T Consensus       138 g~lk~LSlrG~r~v~~sslrt~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~k  217 (483)
T KOG4341|consen  138 GFLKELSLRGCRAVGDSSLRTFASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEGCRK  217 (483)
T ss_pred             cccccccccccccCCcchhhHHhhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHhhhh
Confidence            3578888887752211  112234578888888877753 22111122 357788888887743 4432222 3345888


Q ss_pred             CCEEEcCCCcCCCC-CC-ccccCCCCCCEEEecCccccc--ccCcccccccccCeEEccCCc-CCCCCC-cccCCCCCcc
Q 037302          165 LSNLYLAYNNLVGP-LP-KEVGNMKNLDSLLLNRNSLTG--PIPSTIGYLNLGGKLDLSHNR-LDSPIP-PTIGNLTNLT  238 (408)
Q Consensus       165 L~~L~l~~~~~~~~-~~-~~~~~~~~L~~L~l~~~~~~~--~~~~~~~~~~~L~~l~l~~~~-~~~~~~-~~l~~~~~L~  238 (408)
                      |+++++++|+-... .. .....+..++.+...+|.-.+  .+...-.+++-+.++++..|. +++... ..-..+..|+
T Consensus       218 L~~lNlSwc~qi~~~gv~~~~rG~~~l~~~~~kGC~e~~le~l~~~~~~~~~i~~lnl~~c~~lTD~~~~~i~~~c~~lq  297 (483)
T KOG4341|consen  218 LKYLNLSWCPQISGNGVQALQRGCKELEKLSLKGCLELELEALLKAAAYCLEILKLNLQHCNQLTDEDLWLIACGCHALQ  297 (483)
T ss_pred             HHHhhhccCchhhcCcchHHhccchhhhhhhhcccccccHHHHHHHhccChHhhccchhhhccccchHHHHHhhhhhHhh
Confidence            88888888754221 11 123445556666555543211  111222344455566654442 222211 1123466778


Q ss_pred             EEEccCCcc-cccCCccc-cCCCCCCEEeCCCCcc-ccc-CCccccCCCCCcEEeCCCCcccc--CCCcCCcCCCCCcEE
Q 037302          239 SLDLSSNQL-SGLLPREV-GNLKYLDSLSLDGNNL-IGS-IPPTIGYLTNLTSLNLGYNQLSS--SIPPELMNCSQLQNL  312 (408)
Q Consensus       239 ~L~l~~~~~-~~~~~~~~-~~~~~L~~L~l~~~~~-~~~-~~~~~~~~~~L~~L~l~~~~~~~--~~~~~~~~~~~L~~L  312 (408)
                      .|+.++|.. ++.....+ .++++|+.+.+.+|.- ++. ....-.+++.|+.+++.++....  .....-.+|+.|+.+
T Consensus       298 ~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~sls~~C~~lr~l  377 (483)
T KOG4341|consen  298 VLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDGTLASLSRNCPRLRVL  377 (483)
T ss_pred             hhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhhhHhhhccCCchhccC
Confidence            888877643 22222222 4678888888888763 222 22233467788888887775331  123334567888888


Q ss_pred             EcCCCc-cCCcC----CcccccCCCccEEEcCCcccc-ccCCcCCCCCCCccEEeCCCCccC
Q 037302          313 VLSHNT-LSGIV----PPEIGNLTHLRQLDLSHNFIN-GTIPSQLGYIPNISAVDLSKNNLS  368 (408)
Q Consensus       313 ~l~~~~-~~~~~----~~~~~~~~~L~~L~l~~~~~~-~~~~~~~~~~~~L~~L~l~~~~l~  368 (408)
                      .++.|. +++..    ...-.....+..+.+++|+.+ +...+.+..|+.|+.+++.+|+-.
T Consensus       378 slshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~Le~l~~c~~Leri~l~~~q~v  439 (483)
T KOG4341|consen  378 SLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDATLEHLSICRNLERIELIDCQDV  439 (483)
T ss_pred             ChhhhhhhhhhhhhhhhhccccccccceeeecCCCCchHHHHHHHhhCcccceeeeechhhh
Confidence            888775 23221    112234567888888888544 445566777888888888888653

>PLN03150 hypothetical protein; Provisional

Probab=98.67  E-value=5.5e-08  Score=95.04  Aligned_cols=112  Identities=36%  Similarity=0.574  Sum_probs=98.1

Q ss_pred             CCEEeCCCCcccccCCccccCCCCCcEEeCCCCccccCCCcCCcCCCCCcEEEcCCCccCCcCCcccccCCCccEEEcCC
Q 037302          261 LDSLSLDGNNLIGSIPPTIGYLTNLTSLNLGYNQLSSSIPPELMNCSQLQNLVLSHNTLSGIVPPEIGNLTHLRQLDLSH  340 (408)
Q Consensus       261 L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~  340 (408)
                      ++.|+++++.+....+..+..+++|+.|++++|.+.+..+..+..+++|+.|++++|.+.+..+..+..+++|+.|++++
T Consensus       420 v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~  499 (623)
T PLN03150        420 IDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNG  499 (623)
T ss_pred             EEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcC
Confidence            77889999988877888889999999999999999888888899999999999999999988999999999999999999


Q ss_pred             ccccccCCcCCCC-CCCccEEeCCCCccCCcCC
Q 037302          341 NFINGTIPSQLGY-IPNISAVDLSKNNLSGVVP  372 (408)
Q Consensus       341 ~~~~~~~~~~~~~-~~~L~~L~l~~~~l~~~~~  372 (408)
                      |.+++.+|..+.. ..++..+++.+|+.....|
T Consensus       500 N~l~g~iP~~l~~~~~~~~~l~~~~N~~lc~~p  532 (623)
T PLN03150        500 NSLSGRVPAALGGRLLHRASFNFTDNAGLCGIP  532 (623)
T ss_pred             CcccccCChHHhhccccCceEEecCCccccCCC
Confidence            9999999988765 3567889999997654333

>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]

Probab=98.67  E-value=1e-09  Score=99.78  Aligned_cols=190  Identities=33%  Similarity=0.459  Sum_probs=148.2

Q ss_pred             cEEEcCCCccccccchhhccCCCCcEEeCCCCcCCCCCcccccCCCCCcEEeCCCceecccCcccccCCCCCceeecCCc
Q 037302           22 ESIIIPYTLLSGRIPSEIGALSKLEELALPYNSLTGTIPAEIGSLRNLVELDLSNNILNGSIPLEFGNLKDLDALRLRGN  101 (408)
Q Consensus        22 ~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~  101 (408)
                      ...+++.+.+. .+|..+..|..|..+.++.|.+. ..+..+.++..|..++++.|++. .+|..++.| -|+.|.+++|
T Consensus        78 ~~aDlsrNR~~-elp~~~~~f~~Le~liLy~n~~r-~ip~~i~~L~~lt~l~ls~NqlS-~lp~~lC~l-pLkvli~sNN  153 (722)
T KOG0532|consen   78 VFADLSRNRFS-ELPEEACAFVSLESLILYHNCIR-TIPEAICNLEALTFLDLSSNQLS-HLPDGLCDL-PLKVLIVSNN  153 (722)
T ss_pred             hhhhccccccc-cCchHHHHHHHHHHHHHHhccce-ecchhhhhhhHHHHhhhccchhh-cCChhhhcC-cceeEEEecC
Confidence            34566667666 67777888888999999888776 77888999999999999999987 777777766 4899999999


Q ss_pred             cccccCCCcCCCCCCCCEEEcCCCeecccCcccccCCCCCceEeccCCcccCcCchhhccCCCCCEEEcCCCcCCCCCCc
Q 037302          102 KLDGLIPSSIGNLTNLTHLDLSLNQLSGRLPQEVGNLKNLLSLFLDNNNLTGPIPSTLYHLNQLSNLYLAYNNLVGPLPK  181 (408)
Q Consensus       102 ~i~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~  181 (408)
                      +++ ..|..++..+.|.+++.+.|.+. ..+..+..+.+|+.+.+..|++. .++..+. .-.|..|+++.|++. .++-
T Consensus       154 kl~-~lp~~ig~~~tl~~ld~s~nei~-slpsql~~l~slr~l~vrRn~l~-~lp~El~-~LpLi~lDfScNkis-~iPv  228 (722)
T KOG0532|consen  154 KLT-SLPEEIGLLPTLAHLDVSKNEIQ-SLPSQLGYLTSLRDLNVRRNHLE-DLPEELC-SLPLIRLDFSCNKIS-YLPV  228 (722)
T ss_pred             ccc-cCCcccccchhHHHhhhhhhhhh-hchHHhhhHHHHHHHHHhhhhhh-hCCHHHh-CCceeeeecccCcee-ecch
Confidence            887 55666888899999999999988 56677888899999999988877 4555556 345889999999887 4667


Q ss_pred             cccCCCCCCEEEecCcccccccCccc---ccccccCeEEccCC
Q 037302          182 EVGNMKNLDSLLLNRNSLTGPIPSTI---GYLNLGGKLDLSHN  221 (408)
Q Consensus       182 ~~~~~~~L~~L~l~~~~~~~~~~~~~---~~~~~L~~l~l~~~  221 (408)
                      .|..+.+|++|.+.+|.+.. .+..+   +...-.|+|+...|
T Consensus       229 ~fr~m~~Lq~l~LenNPLqS-PPAqIC~kGkVHIFKyL~~qA~  270 (722)
T KOG0532|consen  229 DFRKMRHLQVLQLENNPLQS-PPAQICEKGKVHIFKYLSTQAC  270 (722)
T ss_pred             hhhhhhhheeeeeccCCCCC-ChHHHHhccceeeeeeecchhc
Confidence            78999999999999998874 22222   22344566766665

>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]

Probab=98.66  E-value=1.5e-10  Score=96.85  Aligned_cols=177  Identities=26%  Similarity=0.260  Sum_probs=103.7

Q ss_pred             CCCEEEecCccccc-ccCcccccccccCeEEccCCcCCCCCCcccCCCCCccEEEccCCccccc--CCccccCCCCCCEE
Q 037302          188 NLDSLLLNRNSLTG-PIPSTIGYLNLGGKLDLSHNRLDSPIPPTIGNLTNLTSLDLSSNQLSGL--LPREVGNLKYLDSL  264 (408)
Q Consensus       188 ~L~~L~l~~~~~~~-~~~~~~~~~~~L~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~--~~~~~~~~~~L~~L  264 (408)
                      .|+.++++...++. .....++.|.+|+.+.+.+.++++.+...++...+|+.|++++|+.-..  ....+..|..|.+|
T Consensus       186 Rlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~L  265 (419)
T KOG2120|consen  186 RLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDEL  265 (419)
T ss_pred             hhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhhc
Confidence            46667776655532 2334556677777777777777665555666677777777777643211  12234567777777


Q ss_pred             eCCCCccccc-CCccccC-CCCCcEEeCCCCccc--cC-CCcCCcCCCCCcEEEcCCCc-cCCcCCcccccCCCccEEEc
Q 037302          265 SLDGNNLIGS-IPPTIGY-LTNLTSLNLGYNQLS--SS-IPPELMNCSQLQNLVLSHNT-LSGIVPPEIGNLTHLRQLDL  338 (408)
Q Consensus       265 ~l~~~~~~~~-~~~~~~~-~~~L~~L~l~~~~~~--~~-~~~~~~~~~~L~~L~l~~~~-~~~~~~~~~~~~~~L~~L~l  338 (408)
                      +++.|..... ....+.+ -++|+.|+++|+.-.  .. ......+||+|..|++++|. ++.-....|.+++.|++|.+
T Consensus       266 NlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~lSl  345 (419)
T KOG2120|consen  266 NLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQHLSL  345 (419)
T ss_pred             CchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHHHhcchheeeeh
Confidence            7777765432 2222222 256777777776421  11 11223457777777777774 33222234456777777777


Q ss_pred             CCccccccCCc---CCCCCCCccEEeCCCCc
Q 037302          339 SHNFINGTIPS---QLGYIPNISAVDLSKNN  366 (408)
Q Consensus       339 ~~~~~~~~~~~---~~~~~~~L~~L~l~~~~  366 (408)
                      +.|...  +|+   .+...|+|.+|++.||-
T Consensus       346 sRCY~i--~p~~~~~l~s~psl~yLdv~g~v  374 (419)
T KOG2120|consen  346 SRCYDI--IPETLLELNSKPSLVYLDVFGCV  374 (419)
T ss_pred             hhhcCC--ChHHeeeeccCcceEEEEecccc
Confidence            777542  333   34566777777777763

>KOG4341 consensus F-box protein containing LRR [General function prediction only]

Probab=98.66  E-value=1.6e-10  Score=101.14  Aligned_cols=248  Identities=19%  Similarity=0.108  Sum_probs=136.6

Q ss_pred             CCCCCEEEcCCC-eecccCcc-cccCCCCCceEeccCCc-ccCcCch-hhccCCCCCEEEcCCCcCCCC--CCccccCCC
Q 037302          114 LTNLTHLDLSLN-QLSGRLPQ-EVGNLKNLLSLFLDNNN-LTGPIPS-TLYHLNQLSNLYLAYNNLVGP--LPKEVGNMK  187 (408)
Q Consensus       114 l~~L~~L~l~~~-~~~~~~~~-~~~~l~~L~~L~l~~~~-~~~~~~~-~~~~~~~L~~L~l~~~~~~~~--~~~~~~~~~  187 (408)
                      |+.|+++++..| .++..... -...+++|++++++.+. +++.... ...++..++.+...+|.-...  +...-+.++
T Consensus       189 C~~l~~l~L~~c~~iT~~~Lk~la~gC~kL~~lNlSwc~qi~~~gv~~~~rG~~~l~~~~~kGC~e~~le~l~~~~~~~~  268 (483)
T KOG4341|consen  189 CRKLRHLNLHSCSSITDVSLKYLAEGCRKLKYLNLSWCPQISGNGVQALQRGCKELEKLSLKGCLELELEALLKAAAYCL  268 (483)
T ss_pred             cchhhhhhhcccchhHHHHHHHHHHhhhhHHHhhhccCchhhcCcchHHhccchhhhhhhhcccccccHHHHHHHhccCh
Confidence            455555555442 22222222 12345666666666553 3321111 233455555555555432110  011112334


Q ss_pred             CCCEEEecCcc-ccc-ccCcccccccccCeEEccCCcC-CCCCC-cccCCCCCccEEEccCCc-ccccCCcccc-CCCCC
Q 037302          188 NLDSLLLNRNS-LTG-PIPSTIGYLNLGGKLDLSHNRL-DSPIP-PTIGNLTNLTSLDLSSNQ-LSGLLPREVG-NLKYL  261 (408)
Q Consensus       188 ~L~~L~l~~~~-~~~-~~~~~~~~~~~L~~l~l~~~~~-~~~~~-~~l~~~~~L~~L~l~~~~-~~~~~~~~~~-~~~~L  261 (408)
                      .+..+++..|. +++ .....-..+..++.+..+++.. ++... ..-..+.+|+.+.+++|. +++.....++ .++.|
T Consensus       269 ~i~~lnl~~c~~lTD~~~~~i~~~c~~lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~L  348 (483)
T KOG4341|consen  269 EILKLNLQHCNQLTDEDLWLIACGCHALQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHL  348 (483)
T ss_pred             HhhccchhhhccccchHHHHHhhhhhHhhhhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhhhcCChhh
Confidence            44555544443 222 1223335677788888776643 22111 122457889999998884 4444444444 56889


Q ss_pred             CEEeCCCCccccc--CCccccCCCCCcEEeCCCCc-cccCCCcCC----cCCCCCcEEEcCCCc-cCCcCCcccccCCCc
Q 037302          262 DSLSLDGNNLIGS--IPPTIGYLTNLTSLNLGYNQ-LSSSIPPEL----MNCSQLQNLVLSHNT-LSGIVPPEIGNLTHL  333 (408)
Q Consensus       262 ~~L~l~~~~~~~~--~~~~~~~~~~L~~L~l~~~~-~~~~~~~~~----~~~~~L~~L~l~~~~-~~~~~~~~~~~~~~L  333 (408)
                      +.+++.++.....  ....-.+|+.|+.+.++.|. +++.....+    .....|+.+.+++|+ +++...+.+..+++|
T Consensus       349 e~l~~e~~~~~~d~tL~sls~~C~~lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~Le~l~~c~~L  428 (483)
T KOG4341|consen  349 ERLDLEECGLITDGTLASLSRNCPRLRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDATLEHLSICRNL  428 (483)
T ss_pred             hhhcccccceehhhhHhhhccCCchhccCChhhhhhhhhhhhhhhhhccccccccceeeecCCCCchHHHHHHHhhCccc
Confidence            9999988864322  33445678999999999886 343322222    346789999999997 455556677889999


Q ss_pred             cEEEcCCcc-ccccCCcCC-CCCCCccEEe
Q 037302          334 RQLDLSHNF-INGTIPSQL-GYIPNISAVD  361 (408)
Q Consensus       334 ~~L~l~~~~-~~~~~~~~~-~~~~~L~~L~  361 (408)
                      +.+++.+|+ ++......+ ..+|+++..-
T Consensus       429 eri~l~~~q~vtk~~i~~~~~~lp~i~v~a  458 (483)
T KOG4341|consen  429 ERIELIDCQDVTKEAISRFATHLPNIKVHA  458 (483)
T ss_pred             ceeeeechhhhhhhhhHHHHhhCccceehh
Confidence            999999994 443333333 3567666543

>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]

Probab=98.58  E-value=4.9e-10  Score=93.92  Aligned_cols=180  Identities=23%  Similarity=0.184  Sum_probs=94.7

Q ss_pred             CceEeccCCcccC-cCchhhccCCCCCEEEcCCCcCCCCCCccccCCCCCCEEEecCcccccccCcccccccccCeEEcc
Q 037302          141 LLSLFLDNNNLTG-PIPSTLYHLNQLSNLYLAYNNLVGPLPKEVGNMKNLDSLLLNRNSLTGPIPSTIGYLNLGGKLDLS  219 (408)
Q Consensus       141 L~~L~l~~~~~~~-~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~  219 (408)
                      |++++++...++. .+...+..|.+|+.+.+.+..+.+.....++.-.+|+.|+++.+..                    
T Consensus       187 lq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG--------------------  246 (419)
T KOG2120|consen  187 LQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSG--------------------  246 (419)
T ss_pred             hHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccc--------------------
Confidence            5555555444331 1222334455555555555555444434444445555555544421                    


Q ss_pred             CCcCCCC-CCcccCCCCCccEEEccCCccccc-CCccccC-CCCCCEEeCCCCccc---ccCCccccCCCCCcEEeCCCC
Q 037302          220 HNRLDSP-IPPTIGNLTNLTSLDLSSNQLSGL-LPREVGN-LKYLDSLSLDGNNLI---GSIPPTIGYLTNLTSLNLGYN  293 (408)
Q Consensus       220 ~~~~~~~-~~~~l~~~~~L~~L~l~~~~~~~~-~~~~~~~-~~~L~~L~l~~~~~~---~~~~~~~~~~~~L~~L~l~~~  293 (408)
                         ++.. ..-.+..|+.|.+|+++.|..... .....++ -++|+.|+++|+.-.   .........||+|.+|++++|
T Consensus       247 ---~t~n~~~ll~~scs~L~~LNlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~  323 (419)
T KOG2120|consen  247 ---FTENALQLLLSSCSRLDELNLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDS  323 (419)
T ss_pred             ---cchhHHHHHHHhhhhHhhcCchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccc
Confidence               1111 111234556666666666644322 1122222 256777777766421   112233567888888888877


Q ss_pred             cc-ccCCCcCCcCCCCCcEEEcCCCcc-CCcCCcccccCCCccEEEcCCccc
Q 037302          294 QL-SSSIPPELMNCSQLQNLVLSHNTL-SGIVPPEIGNLTHLRQLDLSHNFI  343 (408)
Q Consensus       294 ~~-~~~~~~~~~~~~~L~~L~l~~~~~-~~~~~~~~~~~~~L~~L~l~~~~~  343 (408)
                      .. +......+-+++.|++|.++.|.. .-.....+...|+|.+|++.+|--
T Consensus       324 v~l~~~~~~~~~kf~~L~~lSlsRCY~i~p~~~~~l~s~psl~yLdv~g~vs  375 (419)
T KOG2120|consen  324 VMLKNDCFQEFFKFNYLQHLSLSRCYDIIPETLLELNSKPSLVYLDVFGCVS  375 (419)
T ss_pred             cccCchHHHHHHhcchheeeehhhhcCCChHHeeeeccCcceEEEEeccccC
Confidence            53 333334466778888888888863 212223456678899999988843

>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]

Probab=98.46  E-value=1.7e-08  Score=94.16  Aligned_cols=106  Identities=29%  Similarity=0.313  Sum_probs=49.2

Q ss_pred             CCCCCceeecCCccccccCCCcCCCCCCCCEEEcCCCeecccCcccccCCCCCceEeccCCcccCcCchhhccCCCCCEE
Q 037302           89 NLKDLDALRLRGNKLDGLIPSSIGNLTNLTHLDLSLNQLSGRLPQEVGNLKNLLSLFLDNNNLTGPIPSTLYHLNQLSNL  168 (408)
Q Consensus        89 ~l~~L~~L~l~~~~i~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L  168 (408)
                      .+..++.+.++.+.+.. ....+..+.+|+.+++.++.+..+ ...+..+++|+++++++|.++..  ..+..++.|+.|
T Consensus        70 ~l~~l~~l~l~~n~i~~-~~~~l~~~~~l~~l~l~~n~i~~i-~~~l~~~~~L~~L~ls~N~I~~i--~~l~~l~~L~~L  145 (414)
T KOG0531|consen   70 SLTSLKELNLRQNLIAK-ILNHLSKLKSLEALDLYDNKIEKI-ENLLSSLVNLQVLDLSFNKITKL--EGLSTLTLLKEL  145 (414)
T ss_pred             HhHhHHhhccchhhhhh-hhcccccccceeeeeccccchhhc-ccchhhhhcchheeccccccccc--cchhhccchhhh
Confidence            34445555555554442 112244555666666666655422 11144455555555555555432  123334445555


Q ss_pred             EcCCCcCCCCCCccccCCCCCCEEEecCcccc
Q 037302          169 YLAYNNLVGPLPKEVGNMKNLDSLLLNRNSLT  200 (408)
Q Consensus       169 ~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~  200 (408)
                      ++.+|.+...  ..+..++.|+.+++++|.+.
T Consensus       146 ~l~~N~i~~~--~~~~~l~~L~~l~l~~n~i~  175 (414)
T KOG0531|consen  146 NLSGNLISDI--SGLESLKSLKLLDLSYNRIV  175 (414)
T ss_pred             eeccCcchhc--cCCccchhhhcccCCcchhh
Confidence            5555554422  12333444555555554443

>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]

Probab=98.43  E-value=2.6e-08  Score=92.94  Aligned_cols=221  Identities=29%  Similarity=0.345  Sum_probs=97.4

Q ss_pred             cCCCCCceeecCCccccccCCCcCCCCCCCCEEEcCCCeecccCcccccCCCCCceEeccCCcccCcCchhhccCCCCCE
Q 037302           88 GNLKDLDALRLRGNKLDGLIPSSIGNLTNLTHLDLSLNQLSGRLPQEVGNLKNLLSLFLDNNNLTGPIPSTLYHLNQLSN  167 (408)
Q Consensus        88 ~~l~~L~~L~l~~~~i~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~  167 (408)
                      ..+.+|+.+++.++.+..+... +..+++|++|++++|.+...  ..+..++.|+.|++.+|.+..+  ..+..++.|+.
T Consensus        92 ~~~~~l~~l~l~~n~i~~i~~~-l~~~~~L~~L~ls~N~I~~i--~~l~~l~~L~~L~l~~N~i~~~--~~~~~l~~L~~  166 (414)
T KOG0531|consen   92 SKLKSLEALDLYDNKIEKIENL-LSSLVNLQVLDLSFNKITKL--EGLSTLTLLKELNLSGNLISDI--SGLESLKSLKL  166 (414)
T ss_pred             ccccceeeeeccccchhhcccc-hhhhhcchheeccccccccc--cchhhccchhhheeccCcchhc--cCCccchhhhc
Confidence            3444555555555554433111 34455555555555555422  2334444455555555554422  22233455555


Q ss_pred             EEcCCCcCCCCCC-ccccCCCCCCEEEecCcccccccCcccccccccCeEEccCCcCCCCCCcccCCCC--CccEEEccC
Q 037302          168 LYLAYNNLVGPLP-KEVGNMKNLDSLLLNRNSLTGPIPSTIGYLNLGGKLDLSHNRLDSPIPPTIGNLT--NLTSLDLSS  244 (408)
Q Consensus       168 L~l~~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~l~~~~--~L~~L~l~~  244 (408)
                      +++++|.+...-. . ...+.+++.+++.++.+...  ..+.....+..+.+..+.+....+  +....  +|+.+.+++
T Consensus       167 l~l~~n~i~~ie~~~-~~~~~~l~~l~l~~n~i~~i--~~~~~~~~l~~~~l~~n~i~~~~~--l~~~~~~~L~~l~l~~  241 (414)
T KOG0531|consen  167 LDLSYNRIVDIENDE-LSELISLEELDLGGNSIREI--EGLDLLKKLVLLSLLDNKISKLEG--LNELVMLHLRELYLSG  241 (414)
T ss_pred             ccCCcchhhhhhhhh-hhhccchHHHhccCCchhcc--cchHHHHHHHHhhcccccceeccC--cccchhHHHHHHhccc
Confidence            5555555443211 1 24455555555555544321  122222233333444444432211  11112  266666666


Q ss_pred             CcccccCCccccCCCCCCEEeCCCCcccccCCccccCCCCCcEEeCCCCccccCCC---c-CCcCCCCCcEEEcCCCccC
Q 037302          245 NQLSGLLPREVGNLKYLDSLSLDGNNLIGSIPPTIGYLTNLTSLNLGYNQLSSSIP---P-ELMNCSQLQNLVLSHNTLS  320 (408)
Q Consensus       245 ~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~---~-~~~~~~~L~~L~l~~~~~~  320 (408)
                      +.+.. ....+..+..+..+++..+.+...  ..+...+.+..+....+.+.....   . .....+.++.+.+.++...
T Consensus       242 n~i~~-~~~~~~~~~~l~~l~~~~n~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  318 (414)
T KOG0531|consen  242 NRISR-SPEGLENLKNLPVLDLSSNRISNL--EGLERLPKLSELWLNDNKLALSEAISQEYITSAAPTLVTLTLELNPIR  318 (414)
T ss_pred             Ccccc-ccccccccccccccchhhcccccc--ccccccchHHHhccCcchhcchhhhhccccccccccccccccccCccc
Confidence            65542 113344455666666665554322  223334444444554444331111   1 1334456666666666554


Q ss_pred             C
Q 037302          321 G  321 (408)
Q Consensus       321 ~  321 (408)
                      .
T Consensus       319 ~  319 (414)
T KOG0531|consen  319 K  319 (414)
T ss_pred             c
Confidence            3

>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]

Probab=98.43  E-value=2.5e-09  Score=100.05  Aligned_cols=128  Identities=30%  Similarity=0.372  Sum_probs=92.0

Q ss_pred             CccEEEccCCcccccCCccccCCCCCCEEeCCCCcccccCCccccCCCCCcEEeCCCCccccCCCcCCcCCCCCcEEEcC
Q 037302          236 NLTSLDLSSNQLSGLLPREVGNLKYLDSLSLDGNNLIGSIPPTIGYLTNLTSLNLGYNQLSSSIPPELMNCSQLQNLVLS  315 (408)
Q Consensus       236 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~  315 (408)
                      .|...+.+.|.+. .....+.-++.++.|++++|++.+.  ..+..+++|++|+|+.|.+....-....+|. |..|+++
T Consensus       165 ~L~~a~fsyN~L~-~mD~SLqll~ale~LnLshNk~~~v--~~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc~-L~~L~lr  240 (1096)
T KOG1859|consen  165 KLATASFSYNRLV-LMDESLQLLPALESLNLSHNKFTKV--DNLRRLPKLKHLDLSYNCLRHVPQLSMVGCK-LQLLNLR  240 (1096)
T ss_pred             hHhhhhcchhhHH-hHHHHHHHHHHhhhhccchhhhhhh--HHHHhcccccccccccchhccccccchhhhh-heeeeec
Confidence            4555666666665 4455666678888888888888754  3677888888888888887744333344555 8888888


Q ss_pred             CCccCCcCCcccccCCCccEEEcCCcccccc-CCcCCCCCCCccEEeCCCCccCC
Q 037302          316 HNTLSGIVPPEIGNLTHLRQLDLSHNFINGT-IPSQLGYIPNISAVDLSKNNLSG  369 (408)
Q Consensus       316 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~-~~~~~~~~~~L~~L~l~~~~l~~  369 (408)
                      +|.++..  ..+.++++|+.||+++|-+.+. ....++.+..|+.|++.||++-.
T Consensus       241 nN~l~tL--~gie~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl~c  293 (1096)
T KOG1859|consen  241 NNALTTL--RGIENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPLCC  293 (1096)
T ss_pred             ccHHHhh--hhHHhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCcccc
Confidence            8887633  4667788888999998877643 22345567788888999988864

>KOG2982 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.39  E-value=5.9e-08  Score=81.65  Aligned_cols=183  Identities=23%  Similarity=0.192  Sum_probs=76.4

Q ss_pred             CCCCCcEEeCCCceecc--cCcccccCCCCCceeecCCccccccCCCcC-CCCCCCCEEEcCCCeecccC-cccccCCCC
Q 037302           65 SLRNLVELDLSNNILNG--SIPLEFGNLKDLDALRLRGNKLDGLIPSSI-GNLTNLTHLDLSLNQLSGRL-PQEVGNLKN  140 (408)
Q Consensus        65 ~~~~L~~L~l~~~~~~~--~~~~~~~~l~~L~~L~l~~~~i~~~~~~~l-~~l~~L~~L~l~~~~~~~~~-~~~~~~l~~  140 (408)
                      .++.++.+++.+|.+.+  .....+.++|.|+.|+++.|.+..... .+ ....+|+.|.+.++.+.... ...+..+|.
T Consensus        69 ~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~-~lp~p~~nl~~lVLNgT~L~w~~~~s~l~~lP~  147 (418)
T KOG2982|consen   69 SVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIK-SLPLPLKNLRVLVLNGTGLSWTQSTSSLDDLPK  147 (418)
T ss_pred             HhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccc-cCcccccceEEEEEcCCCCChhhhhhhhhcchh
Confidence            34555555655555542  122223455666666665555432211 11 12345555555555443211 122334555


Q ss_pred             CceEeccCCcccCcCch--hhcc-CCCCCEEEcCCCcCCCC--CCccccCCCCCCEEEecCcccccc-cCcccccccccC
Q 037302          141 LLSLFLDNNNLTGPIPS--TLYH-LNQLSNLYLAYNNLVGP--LPKEVGNMKNLDSLLLNRNSLTGP-IPSTIGYLNLGG  214 (408)
Q Consensus       141 L~~L~l~~~~~~~~~~~--~~~~-~~~L~~L~l~~~~~~~~--~~~~~~~~~~L~~L~l~~~~~~~~-~~~~~~~~~~L~  214 (408)
                      ++.++++.|........  .... .+.+++++...|.....  ....-.-+|++.++.+..|++... .......+|.+.
T Consensus       148 vtelHmS~N~~rq~n~Dd~c~e~~s~~v~tlh~~~c~~~~w~~~~~l~r~Fpnv~sv~v~e~PlK~~s~ek~se~~p~~~  227 (418)
T KOG2982|consen  148 VTELHMSDNSLRQLNLDDNCIEDWSTEVLTLHQLPCLEQLWLNKNKLSRIFPNVNSVFVCEGPLKTESSEKGSEPFPSLS  227 (418)
T ss_pred             hhhhhhccchhhhhccccccccccchhhhhhhcCCcHHHHHHHHHhHHhhcccchheeeecCcccchhhcccCCCCCcch
Confidence            55555555532211110  0111 22444444444432210  001112245555565555554321 112223334444


Q ss_pred             eEEccCCcCCCCC-CcccCCCCCccEEEccCCccc
Q 037302          215 KLDLSHNRLDSPI-PPTIGNLTNLTSLDLSSNQLS  248 (408)
Q Consensus       215 ~l~l~~~~~~~~~-~~~l~~~~~L~~L~l~~~~~~  248 (408)
                      .|++..+++.+.. .+.+.+++.|..|.++.+.+.
T Consensus       228 ~LnL~~~~idswasvD~Ln~f~~l~dlRv~~~Pl~  262 (418)
T KOG2982|consen  228 CLNLGANNIDSWASVDALNGFPQLVDLRVSENPLS  262 (418)
T ss_pred             hhhhcccccccHHHHHHHcCCchhheeeccCCccc
Confidence            4555554444321 133455555555555555443

>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A

Probab=98.39  E-value=9e-07  Score=68.22  Aligned_cols=128  Identities=20%  Similarity=0.277  Sum_probs=62.0

Q ss_pred             ccccccccCCCCCCcEEEcCCCccccccchhhccCCCCcEEeCCCCcCCCCCcccccCCCCCcEEeCCCceecccCcccc
Q 037302            8 AELSQLNFTCFPNLESIIIPYTLLSGRIPSEIGALSKLEELALPYNSLTGTIPAEIGSLRNLVELDLSNNILNGSIPLEF   87 (408)
Q Consensus         8 ~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~   87 (408)
                      +.|+..+|.++++|+.+.+.. .+...-...|..+++|+.+.+.++ +.......|..++.++.+.+.. .+.......|
T Consensus         1 ~~i~~~~F~~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F   77 (129)
T PF13306_consen    1 TSIGNNAFYNCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAF   77 (129)
T ss_dssp             -EE-TTTTTT-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTT
T ss_pred             CEECHHHHhCCCCCCEEEECC-CeeEeChhhccccccccccccccc-ccccceeeeecccccccccccc-cccccccccc
Confidence            357888999999999999874 344344456778878888888764 5545556677777777777765 2222334556


Q ss_pred             cCCCCCceeecCCccccccCCCcCCCCCCCCEEEcCCCeecccCcccccCCCCC
Q 037302           88 GNLKDLDALRLRGNKLDGLIPSSIGNLTNLTHLDLSLNQLSGRLPQEVGNLKNL  141 (408)
Q Consensus        88 ~~l~~L~~L~l~~~~i~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L  141 (408)
                      ..+++|+.+.+..+ +..+....|.++ .++.+.+.. .+..+....|.++++|
T Consensus        78 ~~~~~l~~i~~~~~-~~~i~~~~f~~~-~l~~i~~~~-~~~~i~~~~F~~~~~l  128 (129)
T PF13306_consen   78 SNCTNLKNIDIPSN-ITEIGSSSFSNC-NLKEINIPS-NITKIEENAFKNCTKL  128 (129)
T ss_dssp             TT-TTECEEEETTT--BEEHTTTTTT--T--EEE-TT-B-SS----GGG-----
T ss_pred             cccccccccccCcc-ccEEchhhhcCC-CceEEEECC-CccEECCccccccccC
Confidence            66777777777554 444444555555 666666654 2222334455555444

>KOG2982 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.34  E-value=1.5e-07  Score=79.33  Aligned_cols=225  Identities=23%  Similarity=0.220  Sum_probs=145.1

Q ss_pred             CCCCCcEEeCCCceeccc-Ccccc-cCCCCCceeecCCcccccc--CCCcCCCCCCCCEEEcCCCeecccCcccccCCCC
Q 037302           65 SLRNLVELDLSNNILNGS-IPLEF-GNLKDLDALRLRGNKLDGL--IPSSIGNLTNLTHLDLSLNQLSGRLPQEVGNLKN  140 (408)
Q Consensus        65 ~~~~L~~L~l~~~~~~~~-~~~~~-~~l~~L~~L~l~~~~i~~~--~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~  140 (408)
                      ....++.+.+.++.+..+ ....| ..+.+++.+++.+|.+...  ....++++|.|+.|+++.|.+...+...-....+
T Consensus        43 s~ra~ellvln~~~id~~gd~~~~~~~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~n  122 (418)
T KOG2982|consen   43 SLRALELLVLNGSIIDNEGDVMLFGSSVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKN  122 (418)
T ss_pred             cccchhhheecCCCCCcchhHHHHHHHhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccc
Confidence            344566777778877632 22223 3578999999999998743  2234678999999999999887433222245678


Q ss_pred             CceEeccCCccc-CcCchhhccCCCCCEEEcCCCcCCCCCCc--cc-cCCCCCCEEEecCccccc--ccCcccccccccC
Q 037302          141 LLSLFLDNNNLT-GPIPSTLYHLNQLSNLYLAYNNLVGPLPK--EV-GNMKNLDSLLLNRNSLTG--PIPSTIGYLNLGG  214 (408)
Q Consensus       141 L~~L~l~~~~~~-~~~~~~~~~~~~L~~L~l~~~~~~~~~~~--~~-~~~~~L~~L~l~~~~~~~--~~~~~~~~~~~L~  214 (408)
                      |+++-+.+.++. ......+..+|.++.++++.|........  .. .-.+.+..++...|....  .....-..+|++.
T Consensus       123 l~~lVLNgT~L~w~~~~s~l~~lP~vtelHmS~N~~rq~n~Dd~c~e~~s~~v~tlh~~~c~~~~w~~~~~l~r~Fpnv~  202 (418)
T KOG2982|consen  123 LRVLVLNGTGLSWTQSTSSLDDLPKVTELHMSDNSLRQLNLDDNCIEDWSTEVLTLHQLPCLEQLWLNKNKLSRIFPNVN  202 (418)
T ss_pred             eEEEEEcCCCCChhhhhhhhhcchhhhhhhhccchhhhhccccccccccchhhhhhhcCCcHHHHHHHHHhHHhhcccch
Confidence            999999988754 23344566689999999999854321111  11 123456667666665431  1122234567888


Q ss_pred             eEEccCCcCCCCC-CcccCCCCCccEEEccCCccccc-CCccccCCCCCCEEeCCCCcccccCCc------cccCCCCCc
Q 037302          215 KLDLSHNRLDSPI-PPTIGNLTNLTSLDLSSNQLSGL-LPREVGNLKYLDSLSLDGNNLIGSIPP------TIGYLTNLT  286 (408)
Q Consensus       215 ~l~l~~~~~~~~~-~~~l~~~~~L~~L~l~~~~~~~~-~~~~~~~~~~L~~L~l~~~~~~~~~~~------~~~~~~~L~  286 (408)
                      .+.+..+++.... ......++.+..|.++.+++.+. ....+.++++|..|++.++.+.+....      .++.+++++
T Consensus       203 sv~v~e~PlK~~s~ek~se~~p~~~~LnL~~~~idswasvD~Ln~f~~l~dlRv~~~Pl~d~l~~~err~llIaRL~~v~  282 (418)
T KOG2982|consen  203 SVFVCEGPLKTESSEKGSEPFPSLSCLNLGANNIDSWASVDALNGFPQLVDLRVSENPLSDPLRGGERRFLLIARLTKVQ  282 (418)
T ss_pred             heeeecCcccchhhcccCCCCCcchhhhhcccccccHHHHHHHcCCchhheeeccCCcccccccCCcceEEEEeeccceE
Confidence            8888777664432 23455667777888888887643 235677889999999999887644322      234566666


Q ss_pred             EEe
Q 037302          287 SLN  289 (408)
Q Consensus       287 ~L~  289 (408)
                      .|+
T Consensus       283 vLN  285 (418)
T KOG2982|consen  283 VLN  285 (418)
T ss_pred             Eec
Confidence            664

>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]

Probab=98.29  E-value=8e-08  Score=79.84  Aligned_cols=39  Identities=26%  Similarity=0.284  Sum_probs=17.3

Q ss_pred             CCCCCcEEeCCCCccccCCC----cCCcCCCCCcEEEcCCCcc
Q 037302          281 YLTNLTSLNLGYNQLSSSIP----PELMNCSQLQNLVLSHNTL  319 (408)
Q Consensus       281 ~~~~L~~L~l~~~~~~~~~~----~~~~~~~~L~~L~l~~~~~  319 (408)
                      .+++|+.|++.+|-++-...    ..+..++.|++|.+..|-+
T Consensus       212 y~~~LevLDlqDNtft~~gS~~La~al~~W~~lrEL~lnDCll  254 (388)
T COG5238         212 YSHSLEVLDLQDNTFTLEGSRYLADALCEWNLLRELRLNDCLL  254 (388)
T ss_pred             HhCcceeeeccccchhhhhHHHHHHHhcccchhhhccccchhh
Confidence            44555555555554442111    1223344455555555543

>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A

Probab=98.18  E-value=5e-06  Score=64.00  Aligned_cols=122  Identities=18%  Similarity=0.269  Sum_probs=40.4

Q ss_pred             ccCCCCCccEEEccCCcccccCCccccCCCCCCEEeCCCCcccccCCccccCCCCCcEEeCCCCccccCCCcCCcCCCCC
Q 037302          230 TIGNLTNLTSLDLSSNQLSGLLPREVGNLKYLDSLSLDGNNLIGSIPPTIGYLTNLTSLNLGYNQLSSSIPPELMNCSQL  309 (408)
Q Consensus       230 ~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L  309 (408)
                      .|..+.+|+.+.+.. .+.......|..+++|+.+.+.+. +......++..+++++.+.+.+ .+.......|..+++|
T Consensus         7 ~F~~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~~l   83 (129)
T PF13306_consen    7 AFYNCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNCTNL   83 (129)
T ss_dssp             TTTT-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-TTE
T ss_pred             HHhCCCCCCEEEECC-CeeEeChhhccccccccccccccc-ccccceeeeecccccccccccc-cccccccccccccccc
Confidence            344444555555543 223333344445555555555442 3223333444444555555543 2222333344445555


Q ss_pred             cEEEcCCCccCCcCCcccccCCCccEEEcCCccccccCCcCCCCCCCc
Q 037302          310 QNLVLSHNTLSGIVPPEIGNLTHLRQLDLSHNFINGTIPSQLGYIPNI  357 (408)
Q Consensus       310 ~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L  357 (408)
                      +.+.+..+ +..+....|.++ .++.+.+.+ .+......+|.+|++|
T Consensus        84 ~~i~~~~~-~~~i~~~~f~~~-~l~~i~~~~-~~~~i~~~~F~~~~~l  128 (129)
T PF13306_consen   84 KNIDIPSN-ITEIGSSSFSNC-NLKEINIPS-NITKIEENAFKNCTKL  128 (129)
T ss_dssp             CEEEETTT--BEEHTTTTTT--T--EEE-TT-B-SS----GGG-----
T ss_pred             cccccCcc-ccEEchhhhcCC-CceEEEECC-CccEECCccccccccC
Confidence            55555432 322333444444 555555444 2222333444444444

>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]

Probab=98.05  E-value=9.3e-08  Score=89.86  Aligned_cols=122  Identities=27%  Similarity=0.305  Sum_probs=72.8

Q ss_pred             CCEEeCCCCcccccCCccccCCCCCcEEeCCCCccccCCCcCCcCCCCCcEEEcCCCccCCcCCcccccCCCccEEEcCC
Q 037302          261 LDSLSLDGNNLIGSIPPTIGYLTNLTSLNLGYNQLSSSIPPELMNCSQLQNLVLSHNTLSGIVPPEIGNLTHLRQLDLSH  340 (408)
Q Consensus       261 L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~  340 (408)
                      |...+.+.|.+. ..-..+.-++.|+.|++++|+++...  .+..|+.|++|+|++|.+..+..-....|. |..|.+++
T Consensus       166 L~~a~fsyN~L~-~mD~SLqll~ale~LnLshNk~~~v~--~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc~-L~~L~lrn  241 (1096)
T KOG1859|consen  166 LATASFSYNRLV-LMDESLQLLPALESLNLSHNKFTKVD--NLRRLPKLKHLDLSYNCLRHVPQLSMVGCK-LQLLNLRN  241 (1096)
T ss_pred             HhhhhcchhhHH-hHHHHHHHHHHhhhhccchhhhhhhH--HHHhcccccccccccchhccccccchhhhh-heeeeecc
Confidence            444444444443 22234455567777777777776432  566677777777777766533332333443 77777777


Q ss_pred             ccccccCCcCCCCCCCccEEeCCCCccCCcC---C-ccccCCCeEEccCCcc
Q 037302          341 NFINGTIPSQLGYIPNISAVDLSKNNLSGVV---P-ASVRIIPKLIVSENNL  388 (408)
Q Consensus       341 ~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~---~-~~~~~l~~l~l~~n~~  388 (408)
                      |.++..  ..++++++|+-|++++|-+.+..   | +.++.++.|.|.+|++
T Consensus       242 N~l~tL--~gie~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl  291 (1096)
T KOG1859|consen  242 NALTTL--RGIENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPL  291 (1096)
T ss_pred             cHHHhh--hhHHhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCcc
Confidence            776633  23556677777777777665442   2 4455566777777776

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=97.95  E-value=5.6e-06  Score=49.64  Aligned_cols=39  Identities=38%  Similarity=0.724  Sum_probs=23.5

Q ss_pred             CCccEEEcCCccccccCCcCCCCCCCccEEeCCCCccCCc
Q 037302          331 THLRQLDLSHNFINGTIPSQLGYIPNISAVDLSKNNLSGV  370 (408)
Q Consensus       331 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~  370 (408)
                      ++|++|++++|++++ +|..++++++|+.|++++|+++.+
T Consensus         1 ~~L~~L~l~~N~i~~-l~~~l~~l~~L~~L~l~~N~i~~i   39 (44)
T PF12799_consen    1 KNLEELDLSNNQITD-LPPELSNLPNLETLNLSNNPISDI   39 (44)
T ss_dssp             TT-SEEEETSSS-SS-HGGHGTTCTTSSEEEETSSCCSBE
T ss_pred             CcceEEEccCCCCcc-cCchHhCCCCCCEEEecCCCCCCC
Confidence            356677777777763 344466677777777777766643

...

>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]

Probab=97.93  E-value=1.9e-05  Score=63.17  Aligned_cols=103  Identities=21%  Similarity=0.275  Sum_probs=50.3

Q ss_pred             CCCEEeCCCCcccccCCccccCCCCCcEEeCCCCccccCCCcCCcCCCCCcEEEcCCCccCCcC-CcccccCCCccEEEc
Q 037302          260 YLDSLSLDGNNLIGSIPPTIGYLTNLTSLNLGYNQLSSSIPPELMNCSQLQNLVLSHNTLSGIV-PPEIGNLTHLRQLDL  338 (408)
Q Consensus       260 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~-~~~~~~~~~L~~L~l  338 (408)
                      +...++++++.+...  ..+.++++|.+|.+.+|.|+.+.+..-..+|+|+.|.+.+|.+.+.. ...+..||.|++|.+
T Consensus        43 ~~d~iDLtdNdl~~l--~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~Ltl  120 (233)
T KOG1644|consen   43 QFDAIDLTDNDLRKL--DNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEYLTL  120 (233)
T ss_pred             ccceecccccchhhc--ccCCCccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhcchhccCCccceeee
Confidence            444455555544321  23445555556666655555444433334455666666555543221 133445556666666


Q ss_pred             CCccccccCC---cCCCCCCCccEEeCCC
Q 037302          339 SHNFINGTIP---SQLGYIPNISAVDLSK  364 (408)
Q Consensus       339 ~~~~~~~~~~---~~~~~~~~L~~L~l~~  364 (408)
                      -+|++++.--   ..+..+|+|+.|++.+
T Consensus       121 l~Npv~~k~~YR~yvl~klp~l~~LDF~k  149 (233)
T KOG1644|consen  121 LGNPVEHKKNYRLYVLYKLPSLRTLDFQK  149 (233)
T ss_pred             cCCchhcccCceeEEEEecCcceEeehhh
Confidence            6665553211   1234455566555443

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]

Probab=97.92  E-value=1.7e-06  Score=84.57  Aligned_cols=81  Identities=23%  Similarity=0.310  Sum_probs=37.3

Q ss_pred             CCCCcEEeCCCceecc-cCcccccCCCCCceeecCCccccccCCCcCCCCCCCCEEEcCCCeecc-cCcccccCCCCCce
Q 037302           66 LRNLVELDLSNNILNG-SIPLEFGNLKDLDALRLRGNKLDGLIPSSIGNLTNLTHLDLSLNQLSG-RLPQEVGNLKNLLS  143 (408)
Q Consensus        66 ~~~L~~L~l~~~~~~~-~~~~~~~~l~~L~~L~l~~~~i~~~~~~~l~~l~~L~~L~l~~~~~~~-~~~~~~~~l~~L~~  143 (408)
                      +|.|+.|.+.+-.+.. .+.....++|+|..|++++++++..  .+++.+++|++|.+.+-.+.. .....+..+.+|+.
T Consensus       147 LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl--~GIS~LknLq~L~mrnLe~e~~~~l~~LF~L~~L~v  224 (699)
T KOG3665|consen  147 LPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL--SGISRLKNLQVLSMRNLEFESYQDLIDLFNLKKLRV  224 (699)
T ss_pred             CcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc--HHHhccccHHHHhccCCCCCchhhHHHHhcccCCCe
Confidence            4555555555544331 2222334455555555555555433  344455555555554443331 11223344555555


Q ss_pred             EeccC
Q 037302          144 LFLDN  148 (408)
Q Consensus       144 L~l~~  148 (408)
                      ||++.
T Consensus       225 LDIS~  229 (699)
T KOG3665|consen  225 LDISR  229 (699)
T ss_pred             eeccc
Confidence            55553

>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]

Probab=97.87  E-value=5e-06  Score=69.43  Aligned_cols=42  Identities=21%  Similarity=0.320  Sum_probs=23.5

Q ss_pred             ccCCCCCCcEEEcCCCccccccch----hhccCCCCcEEeCCCCcC
Q 037302           14 NFTCFPNLESIIIPYTLLSGRIPS----EIGALSKLEELALPYNSL   55 (408)
Q Consensus        14 ~~~~~~~L~~L~l~~~~~~~~~~~----~~~~~~~L~~L~l~~~~~   55 (408)
                      ++-+||+|+.++|+++.+....|.    .+++-+.|.+|.+.+|..
T Consensus        87 aLlkcp~l~~v~LSDNAfg~~~~e~L~d~is~~t~l~HL~l~NnGl  132 (388)
T COG5238          87 ALLKCPRLQKVDLSDNAFGSEFPEELGDLISSSTDLVHLKLNNNGL  132 (388)
T ss_pred             HHhcCCcceeeeccccccCcccchHHHHHHhcCCCceeEEeecCCC
Confidence            445566666666666655544332    245555666666666544

>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]

Probab=97.86  E-value=3.1e-05  Score=61.90  Aligned_cols=102  Identities=22%  Similarity=0.238  Sum_probs=79.8

Q ss_pred             CCCCcEEeCCCCccccCCCcCCcCCCCCcEEEcCCCccCCcCCcccccCCCccEEEcCCccccccC-CcCCCCCCCccEE
Q 037302          282 LTNLTSLNLGYNQLSSSIPPELMNCSQLQNLVLSHNTLSGIVPPEIGNLTHLRQLDLSHNFINGTI-PSQLGYIPNISAV  360 (408)
Q Consensus       282 ~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~-~~~~~~~~~L~~L  360 (408)
                      ......+++++|.+...  ..|..+++|.+|.+++|+++.+.+..-.-+++|+.|.+.+|.+.... ...++.||+|++|
T Consensus        41 ~d~~d~iDLtdNdl~~l--~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~L  118 (233)
T KOG1644|consen   41 LDQFDAIDLTDNDLRKL--DNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEYL  118 (233)
T ss_pred             ccccceecccccchhhc--ccCCCccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhcchhccCCcccee
Confidence            34678899999988733  46888999999999999999877766667789999999999888642 3567899999999


Q ss_pred             eCCCCccCCcC------CccccCCCeEEccC
Q 037302          361 DLSKNNLSGVV------PASVRIIPKLIVSE  385 (408)
Q Consensus       361 ~l~~~~l~~~~------~~~~~~l~~l~l~~  385 (408)
                      .+-+|++..-.      -..++++++||-+.
T Consensus       119 tll~Npv~~k~~YR~yvl~klp~l~~LDF~k  149 (233)
T KOG1644|consen  119 TLLGNPVEHKKNYRLYVLYKLPSLRTLDFQK  149 (233)
T ss_pred             eecCCchhcccCceeEEEEecCcceEeehhh
Confidence            99999997541      23355566666543

>PRK15386 type III secretion protein GogB; Provisional

Probab=97.82  E-value=0.00014  Score=65.86  Aligned_cols=138  Identities=18%  Similarity=0.210  Sum_probs=83.8

Q ss_pred             cccccccCeEEccCCcCCCCCCcccCCCCCccEEEccCCcccccCCccccCCCCCCEEeCCCCcccccCCccccCCCCCc
Q 037302          207 IGYLNLGGKLDLSHNRLDSPIPPTIGNLTNLTSLDLSSNQLSGLLPREVGNLKYLDSLSLDGNNLIGSIPPTIGYLTNLT  286 (408)
Q Consensus       207 ~~~~~~L~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~  286 (408)
                      +..++.++.|++++|.+... |   .-.++|++|.+++|.--...+..+  .++|+.|.+.+|.....      -.++|+
T Consensus        48 ~~~~~~l~~L~Is~c~L~sL-P---~LP~sLtsL~Lsnc~nLtsLP~~L--P~nLe~L~Ls~Cs~L~s------LP~sLe  115 (426)
T PRK15386         48 IEEARASGRLYIKDCDIESL-P---VLPNELTEITIENCNNLTTLPGSI--PEGLEKLTVCHCPEISG------LPESVR  115 (426)
T ss_pred             HHHhcCCCEEEeCCCCCccc-C---CCCCCCcEEEccCCCCcccCCchh--hhhhhheEccCcccccc------cccccc
Confidence            44568888999998876643 3   123579999998874433444433  35889999988843222      235688


Q ss_pred             EEeCCCCccccCCCcCCcCC-CCCcEEEcCCCc-cCC-cCCcccccCCCccEEEcCCccccccCCcCCCCCCCccEEeCC
Q 037302          287 SLNLGYNQLSSSIPPELMNC-SQLQNLVLSHNT-LSG-IVPPEIGNLTHLRQLDLSHNFINGTIPSQLGYIPNISAVDLS  363 (408)
Q Consensus       287 ~L~l~~~~~~~~~~~~~~~~-~~L~~L~l~~~~-~~~-~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~  363 (408)
                      .|++.++....     +..+ ++|+.|.+.+++ ... ..+..+  .++|++|++++|... ..|..+.  .+|+.|.++
T Consensus       116 ~L~L~~n~~~~-----L~~LPssLk~L~I~~~n~~~~~~lp~~L--PsSLk~L~Is~c~~i-~LP~~LP--~SLk~L~ls  185 (426)
T PRK15386        116 SLEIKGSATDS-----IKNVPNGLTSLSINSYNPENQARIDNLI--SPSLKTLSLTGCSNI-ILPEKLP--ESLQSITLH  185 (426)
T ss_pred             eEEeCCCCCcc-----cccCcchHhheecccccccccccccccc--CCcccEEEecCCCcc-cCccccc--ccCcEEEec
Confidence            88887654431     2222 467888875543 110 111111  257999999998866 3443332  588888887


Q ss_pred             CCc
Q 037302          364 KNN  366 (408)
Q Consensus       364 ~~~  366 (408)
                      .+.
T Consensus       186 ~n~  188 (426)
T PRK15386        186 IEQ  188 (426)
T ss_pred             ccc
Confidence            763

>PRK15386 type III secretion protein GogB; Provisional

Probab=97.77  E-value=0.00026  Score=64.28  Aligned_cols=158  Identities=17%  Similarity=0.211  Sum_probs=97.3

Q ss_pred             ccCCCCCCEEEecCcccccccCcccccccccCeEEccCCcCCCCCCcccCCCCCccEEEccCC-cccccCCccccCCCCC
Q 037302          183 VGNMKNLDSLLLNRNSLTGPIPSTIGYLNLGGKLDLSHNRLDSPIPPTIGNLTNLTSLDLSSN-QLSGLLPREVGNLKYL  261 (408)
Q Consensus       183 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~-~~~~~~~~~~~~~~~L  261 (408)
                      +..+++++.|++++|.+... +   ..++.|+.|.+++|......+..+  .++|++|.+++| .+. ..      .++|
T Consensus        48 ~~~~~~l~~L~Is~c~L~sL-P---~LP~sLtsL~Lsnc~nLtsLP~~L--P~nLe~L~Ls~Cs~L~-sL------P~sL  114 (426)
T PRK15386         48 IEEARASGRLYIKDCDIESL-P---VLPNELTEITIENCNNLTTLPGSI--PEGLEKLTVCHCPEIS-GL------PESV  114 (426)
T ss_pred             HHHhcCCCEEEeCCCCCccc-C---CCCCCCcEEEccCCCCcccCCchh--hhhhhheEccCccccc-cc------cccc
Confidence            44578999999999977633 3   345679999998865433444444  368999999998 433 22      2468


Q ss_pred             CEEeCCCCcccccCCccccCCCCCcEEeCCCCcccc--CCCcCCcCCCCCcEEEcCCCccCCcCCcccccCCCccEEEcC
Q 037302          262 DSLSLDGNNLIGSIPPTIGYLTNLTSLNLGYNQLSS--SIPPELMNCSQLQNLVLSHNTLSGIVPPEIGNLTHLRQLDLS  339 (408)
Q Consensus       262 ~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~--~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~  339 (408)
                      +.|.+.++.... .   -.-+++|+.|.+.++....  ..+..+  .++|++|.+++|... ..+..+.  .+|+.|.++
T Consensus       115 e~L~L~~n~~~~-L---~~LPssLk~L~I~~~n~~~~~~lp~~L--PsSLk~L~Is~c~~i-~LP~~LP--~SLk~L~ls  185 (426)
T PRK15386        115 RSLEIKGSATDS-I---KNVPNGLTSLSINSYNPENQARIDNLI--SPSLKTLSLTGCSNI-ILPEKLP--ESLQSITLH  185 (426)
T ss_pred             ceEEeCCCCCcc-c---ccCcchHhheecccccccccccccccc--CCcccEEEecCCCcc-cCccccc--ccCcEEEec
Confidence            888887554331 1   1123578888885433110  111112  268999999999865 3343343  589999998


Q ss_pred             Cccccc--cCCcCCCCCCCccEEeCCCC
Q 037302          340 HNFING--TIPSQLGYIPNISAVDLSKN  365 (408)
Q Consensus       340 ~~~~~~--~~~~~~~~~~~L~~L~l~~~  365 (408)
                      .+....  .....+.  +++ .|.+.+|
T Consensus       186 ~n~~~sLeI~~~sLP--~nl-~L~f~n~  210 (426)
T PRK15386        186 IEQKTTWNISFEGFP--DGL-DIDLQNS  210 (426)
T ss_pred             ccccccccCcccccc--ccc-Eechhhh
Confidence            874331  1111221  445 6777766

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]

Probab=97.66  E-value=1.7e-05  Score=77.71  Aligned_cols=157  Identities=25%  Similarity=0.197  Sum_probs=98.8

Q ss_pred             ccccCeEEccCCcCCCCC-C-cccCCCCCccEEEccCCccccc-CCccccCCCCCCEEeCCCCcccccCCccccCCCCCc
Q 037302          210 LNLGGKLDLSHNRLDSPI-P-PTIGNLTNLTSLDLSSNQLSGL-LPREVGNLKYLDSLSLDGNNLIGSIPPTIGYLTNLT  286 (408)
Q Consensus       210 ~~~L~~l~l~~~~~~~~~-~-~~l~~~~~L~~L~l~~~~~~~~-~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~  286 (408)
                      -.+|++|++++...-... + ..-..+|+|++|.+.+-.+... ......++|+|..|+++++++...  .+++++++|+
T Consensus       121 r~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl--~GIS~LknLq  198 (699)
T KOG3665|consen  121 RQNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL--SGISRLKNLQ  198 (699)
T ss_pred             HHhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc--HHHhccccHH
Confidence            356778888774332111 1 1112468888888888655422 334456778888888888887644  6677888888


Q ss_pred             EEeCCCCcccc-CCCcCCcCCCCCcEEEcCCCccCCcC------CcccccCCCccEEEcCCccccccCCcC-CCCCCCcc
Q 037302          287 SLNLGYNQLSS-SIPPELMNCSQLQNLVLSHNTLSGIV------PPEIGNLTHLRQLDLSHNFINGTIPSQ-LGYIPNIS  358 (408)
Q Consensus       287 ~L~l~~~~~~~-~~~~~~~~~~~L~~L~l~~~~~~~~~------~~~~~~~~~L~~L~l~~~~~~~~~~~~-~~~~~~L~  358 (408)
                      .|.+.+-.+.. .....+-++.+|+.|++|..+.....      .+.-..+|+|+.||.++..+.+..-+. +...|+|+
T Consensus       199 ~L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~~~~le~ll~sH~~L~  278 (699)
T KOG3665|consen  199 VLSMRNLEFESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDINEEILEELLNSHPNLQ  278 (699)
T ss_pred             HHhccCCCCCchhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcchhHHHHHHHHHhCccHh
Confidence            88887766663 11223556788888888887543211      122234788888888888777554333 34567777


Q ss_pred             EEeCCCCccC
Q 037302          359 AVDLSKNNLS  368 (408)
Q Consensus       359 ~L~l~~~~l~  368 (408)
                      .+..-+|...
T Consensus       279 ~i~~~~~~~~  288 (699)
T KOG3665|consen  279 QIAALDCLAL  288 (699)
T ss_pred             hhhhhhhhcc
Confidence            7776665443

>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]

Probab=97.65  E-value=1.4e-06  Score=64.87  Aligned_cols=86  Identities=29%  Similarity=0.286  Sum_probs=54.3

Q ss_pred             CCCCCEEeCCCCcccccCCccccCCCCCcEEeCCCCccccCCCcCCcCCCCCcEEEcCCCccCCcCCcccccCCCccEEE
Q 037302          258 LKYLDSLSLDGNNLIGSIPPTIGYLTNLTSLNLGYNQLSSSIPPELMNCSQLQNLVLSHNTLSGIVPPEIGNLTHLRQLD  337 (408)
Q Consensus       258 ~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~  337 (408)
                      ...|+..++++|.+.+........++.++.+++++|.+. ..|..+..++.|+.|++++|++. ..+..+..+.++-.|+
T Consensus        52 ~~el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~neis-dvPeE~Aam~aLr~lNl~~N~l~-~~p~vi~~L~~l~~Ld  129 (177)
T KOG4579|consen   52 GYELTKISLSDNGFKKFPKKFTIKFPTATTLNLANNEIS-DVPEELAAMPALRSLNLRFNPLN-AEPRVIAPLIKLDMLD  129 (177)
T ss_pred             CceEEEEecccchhhhCCHHHhhccchhhhhhcchhhhh-hchHHHhhhHHhhhcccccCccc-cchHHHHHHHhHHHhc
Confidence            345566667776666555455555666777777777776 34444666777777777777765 4455555566677777


Q ss_pred             cCCccccc
Q 037302          338 LSHNFING  345 (408)
Q Consensus       338 l~~~~~~~  345 (408)
                      ..+|....
T Consensus       130 s~~na~~e  137 (177)
T KOG4579|consen  130 SPENARAE  137 (177)
T ss_pred             CCCCcccc
Confidence            77766653

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=97.57  E-value=0.00011  Score=44.10  Aligned_cols=37  Identities=30%  Similarity=0.540  Sum_probs=20.3

Q ss_pred             CCCcEEEcCCCccccccchhhccCCCCcEEeCCCCcCC
Q 037302           19 PNLESIIIPYTLLSGRIPSEIGALSKLEELALPYNSLT   56 (408)
Q Consensus        19 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~   56 (408)
                      ++|++|+++++.+. .++..++.+++|+.|++++|.++
T Consensus         1 ~~L~~L~l~~N~i~-~l~~~l~~l~~L~~L~l~~N~i~   37 (44)
T PF12799_consen    1 KNLEELDLSNNQIT-DLPPELSNLPNLETLNLSNNPIS   37 (44)
T ss_dssp             TT-SEEEETSSS-S-SHGGHGTTCTTSSEEEETSSCCS
T ss_pred             CcceEEEccCCCCc-ccCchHhCCCCCCEEEecCCCCC
Confidence            35666666666665 33444566666666666666554

...

>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]

Probab=97.50  E-value=3.7e-06  Score=80.62  Aligned_cols=129  Identities=22%  Similarity=0.133  Sum_probs=61.4

Q ss_pred             CCCCCEEEcCCCcCCCC--CCccccCCCCCCEEEecCc-cc-cc---ccCcccccccccCeEEccCCc-CCCCCCcccC-
Q 037302          162 LNQLSNLYLAYNNLVGP--LPKEVGNMKNLDSLLLNRN-SL-TG---PIPSTIGYLNLGGKLDLSHNR-LDSPIPPTIG-  232 (408)
Q Consensus       162 ~~~L~~L~l~~~~~~~~--~~~~~~~~~~L~~L~l~~~-~~-~~---~~~~~~~~~~~L~~l~l~~~~-~~~~~~~~l~-  232 (408)
                      ++.|+.+.+.++.....  .......++.|+.|+++++ .. ..   ........++.++.++++.+. +++.....++ 
T Consensus       187 ~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l~~  266 (482)
T KOG1947|consen  187 CPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSALAS  266 (482)
T ss_pred             CchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHHHh
Confidence            56666666665533222  2233455666666666552 11 10   011233445666666666655 3333222222 


Q ss_pred             CCCCccEEEccCCc-ccccCCccc-cCCCCCCEEeCCCCccccc--CCccccCCCCCcEEeC
Q 037302          233 NLTNLTSLDLSSNQ-LSGLLPREV-GNLKYLDSLSLDGNNLIGS--IPPTIGYLTNLTSLNL  290 (408)
Q Consensus       233 ~~~~L~~L~l~~~~-~~~~~~~~~-~~~~~L~~L~l~~~~~~~~--~~~~~~~~~~L~~L~l  290 (408)
                      .|++|+.|.+.+|. +++.....+ ..++.|++|++++|.....  .......+++|+.+.+
T Consensus       267 ~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~~d~~l~~~~~~c~~l~~l~~  328 (482)
T KOG1947|consen  267 RCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGLTDSGLEALLKNCPNLRELKL  328 (482)
T ss_pred             hCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccchHHHHHHHHHhCcchhhhhh
Confidence            26667777666664 343332222 3456677777766654311  2222334555555443

>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]

Probab=97.48  E-value=4.3e-06  Score=62.43  Aligned_cols=139  Identities=19%  Similarity=0.216  Sum_probs=84.6

Q ss_pred             CCEEeCCCCccccc--CCccccCCCCCcEEeCCCCccccCCCcCCcCCCCCcEEEcCCCccCCcCCcccccCCCccEEEc
Q 037302          261 LDSLSLDGNNLIGS--IPPTIGYLTNLTSLNLGYNQLSSSIPPELMNCSQLQNLVLSHNTLSGIVPPEIGNLTHLRQLDL  338 (408)
Q Consensus       261 L~~L~l~~~~~~~~--~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l  338 (408)
                      +..++++.|.+.-.  ....+..-..|+..++++|.+....+..-...+.++.+++.+|.+.+ .++.+..++.|+.+++
T Consensus        29 ~h~ldLssc~lm~i~davy~l~~~~el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~neisd-vPeE~Aam~aLr~lNl  107 (177)
T KOG4579|consen   29 LHFLDLSSCQLMYIADAVYMLSKGYELTKISLSDNGFKKFPKKFTIKFPTATTLNLANNEISD-VPEELAAMPALRSLNL  107 (177)
T ss_pred             hhhcccccchhhHHHHHHHHHhCCceEEEEecccchhhhCCHHHhhccchhhhhhcchhhhhh-chHHHhhhHHhhhccc
Confidence            44455556654311  12223344566677777777774333333345677777777777763 3455777777777777


Q ss_pred             CCccccccCCcCCCCCCCccEEeCCCCccCCcCCcccc--CCCeEEccCCccCCCCCCCcCCCCC
Q 037302          339 SHNFINGTIPSQLGYIPNISAVDLSKNNLSGVVPASVR--IIPKLIVSENNLELENSTSSENAPP  401 (408)
Q Consensus       339 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~--~l~~l~l~~n~~~~~~~~~~~~~~~  401 (408)
                      +.|++. ..|..+..+.++-.|+.-+|.+.-+.-..+.  ....+++.++++.+.=+..+|-+.+
T Consensus       108 ~~N~l~-~~p~vi~~L~~l~~Lds~~na~~eid~dl~~s~~~al~~lgnepl~~~~~~klqa~kp  171 (177)
T KOG4579|consen  108 RFNPLN-AEPRVIAPLIKLDMLDSPENARAEIDVDLFYSSLPALIKLGNEPLGDETKKKLQALKP  171 (177)
T ss_pred             ccCccc-cchHHHHHHHhHHHhcCCCCccccCcHHHhccccHHHHHhcCCcccccCcccccccCC
Confidence            777777 5566666667777777777766544333222  2226677777787777777776663

>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]

Probab=97.40  E-value=9.2e-06  Score=77.88  Aligned_cols=132  Identities=22%  Similarity=0.091  Sum_probs=73.5

Q ss_pred             CCCCCceEeccCCc-ccCc-CchhhccCCCCCEEEcCCC-cCCCC----CCccccCCCCCCEEEecCcc-cccccCccc-
Q 037302          137 NLKNLLSLFLDNNN-LTGP-IPSTLYHLNQLSNLYLAYN-NLVGP----LPKEVGNMKNLDSLLLNRNS-LTGPIPSTI-  207 (408)
Q Consensus       137 ~l~~L~~L~l~~~~-~~~~-~~~~~~~~~~L~~L~l~~~-~~~~~----~~~~~~~~~~L~~L~l~~~~-~~~~~~~~~-  207 (408)
                      ..+.|+.+.+.++. +... .......++.|+.++++++ .....    .......+++|+.+++..+. +++.....+ 
T Consensus       186 ~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l~  265 (482)
T KOG1947|consen  186 SCPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSALA  265 (482)
T ss_pred             hCchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHHH
Confidence            36777777777663 2211 2234455788888888763 21111    11233456778888888776 443332232 


Q ss_pred             ccccccCeEEccCCc-CCCCC-CcccCCCCCccEEEccCCccc-cc-CCccccCCCCCCEEeCCC
Q 037302          208 GYLNLGGKLDLSHNR-LDSPI-PPTIGNLTNLTSLDLSSNQLS-GL-LPREVGNLKYLDSLSLDG  268 (408)
Q Consensus       208 ~~~~~L~~l~l~~~~-~~~~~-~~~l~~~~~L~~L~l~~~~~~-~~-~~~~~~~~~~L~~L~l~~  268 (408)
                      ..++.|+.+.+.+|. +++.. ......++.|++|++++|... +. .......+++++.|.+..
T Consensus       266 ~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~~d~~l~~~~~~c~~l~~l~~~~  330 (482)
T KOG1947|consen  266 SRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGLTDSGLEALLKNCPNLRELKLLS  330 (482)
T ss_pred             hhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccchHHHHHHHHHhCcchhhhhhhh
Confidence            337788888876665 33322 223345778888888887543 11 122233466666655443

>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=97.13  E-value=0.00013  Score=60.95  Aligned_cols=57  Identities=30%  Similarity=0.199  Sum_probs=23.6

Q ss_pred             CCCCCEEEcCCCeeccc-CcccccCCCCCceEeccCCcccCcCc---hhhccCCCCCEEEc
Q 037302          114 LTNLTHLDLSLNQLSGR-LPQEVGNLKNLLSLFLDNNNLTGPIP---STLYHLNQLSNLYL  170 (408)
Q Consensus       114 l~~L~~L~l~~~~~~~~-~~~~~~~l~~L~~L~l~~~~~~~~~~---~~~~~~~~L~~L~l  170 (408)
                      +++|+++++++|+++.. -...++.+++|..|++..|..+....   ..|.-+++|++++-
T Consensus        90 ~P~l~~l~ls~Nki~~lstl~pl~~l~nL~~Ldl~n~~~~~l~dyre~vf~ll~~L~~LD~  150 (260)
T KOG2739|consen   90 APNLKVLNLSGNKIKDLSTLRPLKELENLKSLDLFNCSVTNLDDYREKVFLLLPSLKYLDG  150 (260)
T ss_pred             CCceeEEeecCCccccccccchhhhhcchhhhhcccCCccccccHHHHHHHHhhhhccccc
Confidence            35555555555544310 00112334445555555544332111   12333566666554

>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=97.00  E-value=0.00029  Score=58.90  Aligned_cols=63  Identities=27%  Similarity=0.303  Sum_probs=26.4

Q ss_pred             CCCCCCEEeCCCC--cccccCCccccCCCCCcEEeCCCCcccc-CCCcCCcCCCCCcEEEcCCCcc
Q 037302          257 NLKYLDSLSLDGN--NLIGSIPPTIGYLTNLTSLNLGYNQLSS-SIPPELMNCSQLQNLVLSHNTL  319 (408)
Q Consensus       257 ~~~~L~~L~l~~~--~~~~~~~~~~~~~~~L~~L~l~~~~~~~-~~~~~~~~~~~L~~L~l~~~~~  319 (408)
                      .+++|+.|.++.+  ............+|+|+++++++|.+.. .....+..+++|..|++.+|..
T Consensus        63 ~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~pl~~l~nL~~Ldl~n~~~  128 (260)
T KOG2739|consen   63 KLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRPLKELENLKSLDLFNCSV  128 (260)
T ss_pred             CcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccchhhhhcchhhhhcccCCc
Confidence            3445555555555  2222233333344555555555554441 0111122334444445555443

>KOG2123 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.89  E-value=2e-05  Score=66.20  Aligned_cols=99  Identities=27%  Similarity=0.346  Sum_probs=59.1

Q ss_pred             CCCCEEeCCCCcccccCCccccCCCCCcEEeCCCCccccCCCcCCcCCCCCcEEEcCCCccCCcCC-cccccCCCccEEE
Q 037302          259 KYLDSLSLDGNNLIGSIPPTIGYLTNLTSLNLGYNQLSSSIPPELMNCSQLQNLVLSHNTLSGIVP-PEIGNLTHLRQLD  337 (408)
Q Consensus       259 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~-~~~~~~~~L~~L~  337 (408)
                      .+.+.|+..||.+.++  .....++.|++|.|+-|.|+..  ..+..|++|++|.|..|.|.++.. +.+.++|+|+.|+
T Consensus        19 ~~vkKLNcwg~~L~DI--sic~kMp~lEVLsLSvNkIssL--~pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~LW   94 (388)
T KOG2123|consen   19 ENVKKLNCWGCGLDDI--SICEKMPLLEVLSLSVNKISSL--APLQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTLW   94 (388)
T ss_pred             HHhhhhcccCCCccHH--HHHHhcccceeEEeeccccccc--hhHHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhHh
Confidence            4455666677766543  3345667777777777777633  346667777777777776653321 2345677777777


Q ss_pred             cCCccccccCCc-----CCCCCCCccEEe
Q 037302          338 LSHNFINGTIPS-----QLGYIPNISAVD  361 (408)
Q Consensus       338 l~~~~~~~~~~~-----~~~~~~~L~~L~  361 (408)
                      |..|+-.+..+.     .++.+|+|+.|+
T Consensus        95 L~ENPCc~~ag~nYR~~VLR~LPnLkKLD  123 (388)
T KOG2123|consen   95 LDENPCCGEAGQNYRRKVLRVLPNLKKLD  123 (388)
T ss_pred             hccCCcccccchhHHHHHHHHcccchhcc
Confidence            777766544332     233456666553

>KOG2123 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.65  E-value=5.5e-05  Score=63.62  Aligned_cols=80  Identities=25%  Similarity=0.194  Sum_probs=48.3

Q ss_pred             CCCCcEEeCCCCcCCCCCcccccCCCCCcEEeCCCceecccCcccccCCCCCceeecCCccccccC-CCcCCCCCCCCEE
Q 037302           42 LSKLEELALPYNSLTGTIPAEIGSLRNLVELDLSNNILNGSIPLEFGNLKDLDALRLRGNKLDGLI-PSSIGNLTNLTHL  120 (408)
Q Consensus        42 ~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~-~~~l~~l~~L~~L  120 (408)
                      +.+.+.|+.-||.++++  ....+++.|++|.|+-|+|...  ..+..|.+|++|+|+.|.|.++. ...+.++++|+.|
T Consensus        18 l~~vkKLNcwg~~L~DI--sic~kMp~lEVLsLSvNkIssL--~pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~L   93 (388)
T KOG2123|consen   18 LENVKKLNCWGCGLDDI--SICEKMPLLEVLSLSVNKISSL--APLQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTL   93 (388)
T ss_pred             HHHhhhhcccCCCccHH--HHHHhcccceeEEeeccccccc--hhHHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhH
Confidence            34556666666666544  3445677777777777766532  23566777777777777665331 1235566666666


Q ss_pred             EcCCC
Q 037302          121 DLSLN  125 (408)
Q Consensus       121 ~l~~~  125 (408)
                      .+..|
T Consensus        94 WL~EN   98 (388)
T KOG2123|consen   94 WLDEN   98 (388)
T ss_pred             hhccC
Confidence            66554

>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=96.24  E-value=0.002  Score=32.02  Aligned_cols=21  Identities=33%  Similarity=0.265  Sum_probs=12.4

Q ss_pred             CCeEEccCCccCCCCCCCcCCC
Q 037302          378 IPKLIVSENNLELENSTSSENA  399 (408)
Q Consensus       378 l~~l~l~~n~~~~~~~~~~~~~  399 (408)
                      |++|++++|+++ .+|..|++|
T Consensus         2 L~~Ldls~n~l~-~ip~~~~~l   22 (22)
T PF00560_consen    2 LEYLDLSGNNLT-SIPSSFSNL   22 (22)
T ss_dssp             ESEEEETSSEES-EEGTTTTT-
T ss_pred             ccEEECCCCcCE-eCChhhcCC
Confidence            456666666665 666665543

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....

>KOG3864 consensus Uncharacterized conserved protein [Function unknown]

Probab=95.97  E-value=0.00037  Score=56.00  Aligned_cols=81  Identities=16%  Similarity=0.146  Sum_probs=42.8

Q ss_pred             CcEEeCCCCccccCCCcCCcCCCCCcEEEcCCCc-cCCcCCccc-ccCCCccEEEcCCc-cccccCCcCCCCCCCccEEe
Q 037302          285 LTSLNLGYNQLSSSIPPELMNCSQLQNLVLSHNT-LSGIVPPEI-GNLTHLRQLDLSHN-FINGTIPSQLGYIPNISAVD  361 (408)
Q Consensus       285 L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~-~~~~~~~~~-~~~~~L~~L~l~~~-~~~~~~~~~~~~~~~L~~L~  361 (408)
                      ++.++-+++.|.......+.++++++.|.+.+|+ +.+.-.+.+ ...++|+.|+|++| +||+...+.+..+++|+.|.
T Consensus       103 IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~L~  182 (221)
T KOG3864|consen  103 IEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNLRRLH  182 (221)
T ss_pred             EEEEecCCchHHHHHHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHHhhhhHHHH
Confidence            4555556665555555555556666666666664 111100111 12356666666666 55555555555666666666


Q ss_pred             CCCC
Q 037302          362 LSKN  365 (408)
Q Consensus       362 l~~~  365 (408)
                      +++=
T Consensus       183 l~~l  186 (221)
T KOG3864|consen  183 LYDL  186 (221)
T ss_pred             hcCc
Confidence            5554

>KOG3864 consensus Uncharacterized conserved protein [Function unknown]

Probab=94.50  E-value=0.0026  Score=51.27  Aligned_cols=81  Identities=19%  Similarity=0.220  Sum_probs=40.1

Q ss_pred             CccEEEccCCcccccCCccccCCCCCCEEeCCCCcccccC-Cccc-cCCCCCcEEeCCCCc-cccCCCcCCcCCCCCcEE
Q 037302          236 NLTSLDLSSNQLSGLLPREVGNLKYLDSLSLDGNNLIGSI-PPTI-GYLTNLTSLNLGYNQ-LSSSIPPELMNCSQLQNL  312 (408)
Q Consensus       236 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~-~~~~-~~~~~L~~L~l~~~~-~~~~~~~~~~~~~~L~~L  312 (408)
                      .++.++-+++.+......-+..++.++.|.+.+|...+.. ...+ .-.++|+.|++++|. |++.....+..+++|+.|
T Consensus       102 ~IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~L  181 (221)
T KOG3864|consen  102 KIEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNLRRL  181 (221)
T ss_pred             eEEEEecCCchHHHHHHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHHhhhhHHH
Confidence            4666666766666555555666666777777666543221 1111 122445555555443 343333334444444444


Q ss_pred             EcCC
Q 037302          313 VLSH  316 (408)
Q Consensus       313 ~l~~  316 (408)
                      .+.+
T Consensus       182 ~l~~  185 (221)
T KOG3864|consen  182 HLYD  185 (221)
T ss_pred             HhcC
Confidence            4433

>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=94.47  E-value=0.017  Score=28.59  Aligned_cols=12  Identities=50%  Similarity=0.562  Sum_probs=6.4

Q ss_pred             ccEEEcCCcccc
Q 037302          333 LRQLDLSHNFIN  344 (408)
Q Consensus       333 L~~L~l~~~~~~  344 (408)
                      |++|++++|+++
T Consensus         2 L~~Ldls~n~l~   13 (22)
T PF00560_consen    2 LEYLDLSGNNLT   13 (22)
T ss_dssp             ESEEEETSSEES
T ss_pred             ccEEECCCCcCE
Confidence            455555555555

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....

>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D

Probab=91.82  E-value=0.12  Score=23.65  Aligned_cols=11  Identities=64%  Similarity=0.854  Sum_probs=3.4

Q ss_pred             ccEEEcCCccc
Q 037302          333 LRQLDLSHNFI  343 (408)
Q Consensus       333 L~~L~l~~~~~  343 (408)
                      |+.|++++|++
T Consensus         3 L~~L~l~~n~L   13 (17)
T PF13504_consen    3 LRTLDLSNNRL   13 (17)
T ss_dssp             -SEEEETSS--
T ss_pred             cCEEECCCCCC
Confidence            34444444443

...

>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily

Probab=90.76  E-value=0.21  Score=25.71  Aligned_cols=21  Identities=43%  Similarity=0.760  Sum_probs=11.7

Q ss_pred             CCccEEeCCCCccCCcCCccc
Q 037302          355 PNISAVDLSKNNLSGVVPASV  375 (408)
Q Consensus       355 ~~L~~L~l~~~~l~~~~~~~~  375 (408)
                      ++|+.|++++|++..+.+..|
T Consensus         2 ~~L~~L~L~~N~l~~lp~~~f   22 (26)
T smart00369        2 PNLRELDLSNNQLSSLPPGAF   22 (26)
T ss_pred             CCCCEEECCCCcCCcCCHHHc
Confidence            455666666666655544444

>smart00370 LRR Leucine-rich repeats, outliers

Probab=90.76  E-value=0.21  Score=25.71  Aligned_cols=21  Identities=43%  Similarity=0.760  Sum_probs=11.7

Q ss_pred             CCccEEeCCCCccCCcCCccc
Q 037302          355 PNISAVDLSKNNLSGVVPASV  375 (408)
Q Consensus       355 ~~L~~L~l~~~~l~~~~~~~~  375 (408)
                      ++|+.|++++|++..+.+..|
T Consensus         2 ~~L~~L~L~~N~l~~lp~~~f   22 (26)
T smart00370        2 PNLRELDLSNNQLSSLPPGAF   22 (26)
T ss_pred             CCCCEEECCCCcCCcCCHHHc
Confidence            455666666666655544444

>KOG4308 consensus LRR-containing protein [Function unknown]

Probab=85.36  E-value=0.0017  Score=61.20  Aligned_cols=83  Identities=30%  Similarity=0.257  Sum_probs=39.5

Q ss_pred             CCEEEcCCCcCCCC----CCccccCCCCCCEEEecCccccccc----Ccccccc-cccCeEEccCCcCCCCC----Cccc
Q 037302          165 LSNLYLAYNNLVGP----LPKEVGNMKNLDSLLLNRNSLTGPI----PSTIGYL-NLGGKLDLSHNRLDSPI----PPTI  231 (408)
Q Consensus       165 L~~L~l~~~~~~~~----~~~~~~~~~~L~~L~l~~~~~~~~~----~~~~~~~-~~L~~l~l~~~~~~~~~----~~~l  231 (408)
                      +..+.+.+|.+...    +...+...+.|..|+++.|.+.+..    ...+... ..++.|.+..|.+....    ...+
T Consensus        89 l~~L~L~~~~l~~~~~~~l~~~l~t~~~L~~L~l~~n~l~~~g~~~l~~~l~~~~~~l~~L~l~~c~l~~~g~~~l~~~L  168 (478)
T KOG4308|consen   89 LLHLSLANNRLGDRGAEELAQALKTLPTLGQLDLSGNNLGDEGARLLCEGLRLPQCLLQTLELVSCSLTSEGAAPLAAVL  168 (478)
T ss_pred             HHHhhhhhCccccchHHHHHHHhcccccHhHhhcccCCCccHhHHHHHhhcccchHHHHHHHhhcccccccchHHHHHHH
Confidence            55566666665432    2233455667777777776665321    1112222 33444555444443321    1223


Q ss_pred             CCCCCccEEEccCCcc
Q 037302          232 GNLTNLTSLDLSSNQL  247 (408)
Q Consensus       232 ~~~~~L~~L~l~~~~~  247 (408)
                      .....++.++++.|.+
T Consensus       169 ~~~~~l~~l~l~~n~l  184 (478)
T KOG4308|consen  169 EKNEHLTELDLSLNGL  184 (478)
T ss_pred             hcccchhHHHHHhccc
Confidence            3345556666655544

>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A

Probab=85.18  E-value=0.3  Score=24.57  Aligned_cols=15  Identities=27%  Similarity=0.547  Sum_probs=7.4

Q ss_pred             CCCcEEEcCCCcccc
Q 037302           19 PNLESIIIPYTLLSG   33 (408)
Q Consensus        19 ~~L~~L~l~~~~~~~   33 (408)
                      ++|++|++++|.+.+
T Consensus         2 ~~L~~L~l~~n~i~~   16 (24)
T PF13516_consen    2 PNLETLDLSNNQITD   16 (24)
T ss_dssp             TT-SEEE-TSSBEHH
T ss_pred             CCCCEEEccCCcCCH
Confidence            556666666665543

...

>KOG0473 consensus Leucine-rich repeat protein [Function unknown]

Probab=82.65  E-value=0.021  Score=47.26  Aligned_cols=90  Identities=13%  Similarity=0.171  Sum_probs=40.7

Q ss_pred             ccccccCCCCCCcEEEcCCCccccccchhhccCCCCcEEeCCCCcCCCCCcccccCCCCCcEEeCCCceecccCcccccC
Q 037302           10 LSQLNFTCFPNLESIIIPYTLLSGRIPSEIGALSKLEELALPYNSLTGTIPAEIGSLRNLVELDLSNNILNGSIPLEFGN   89 (408)
Q Consensus        10 ~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~   89 (408)
                      |+.-.+..+...++||++.+.... +-..|+.++.+..|+++.+.+. ..+.++.....++.+++..|... ..|..+..
T Consensus        33 ~~v~ei~~~kr~tvld~~s~r~vn-~~~n~s~~t~~~rl~~sknq~~-~~~~d~~q~~e~~~~~~~~n~~~-~~p~s~~k  109 (326)
T KOG0473|consen   33 IPVREIASFKRVTVLDLSSNRLVN-LGKNFSILTRLVRLDLSKNQIK-FLPKDAKQQRETVNAASHKNNHS-QQPKSQKK  109 (326)
T ss_pred             cchhhhhccceeeeehhhhhHHHh-hccchHHHHHHHHHhccHhhHh-hChhhHHHHHHHHHHHhhccchh-hCCccccc
Confidence            333334444444555554443321 1112333344444455544443 44444444444555555444443 44555555


Q ss_pred             CCCCceeecCCcc
Q 037302           90 LKDLDALRLRGNK  102 (408)
Q Consensus        90 l~~L~~L~l~~~~  102 (408)
                      .+++++++..++.
T Consensus       110 ~~~~k~~e~k~~~  122 (326)
T KOG0473|consen  110 EPHPKKNEQKKTE  122 (326)
T ss_pred             cCCcchhhhccCc
Confidence            5555555555544

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	408
3riz_A	772	Crystal Structure Of The Plant Steroid Receptor Bri		2e-28
3riz_A	772	Crystal Structure Of The Plant Steroid Receptor Bri		6e-05
3rgx_A	768	Structural Insight Into Brassinosteroid Perception		2e-28
3rgx_A	768	Structural Insight Into Brassinosteroid Perception		6e-05
1ogq_A	313	The Crystal Structure Of Pgip (Polygalacturonase In		7e-15
1ogq_A	313	The Crystal Structure Of Pgip (Polygalacturonase In		5e-11
2omv_A	461	Crystal Structure Of Inla S192n Y369s/hec1 Complex		2e-05
2omu_A	462	Crystal Structure Of Inla G194s+s Y369s/hec1 Comple		2e-05
1o6s_A	466	Internalin (Listeria Monocytogenes) E-Cadherin (Hum		3e-05
2omz_A	466	Crystal Structure Of Inla Y369a/hec1 Complex Length		3e-05
2omt_A	462	Crystal Structure Of Inla G194s+sHEC1 COMPLEX Lengt		3e-05
2omx_A	462	Crystal Structure Of Inla S192n G194s+sHEC1 COMPLEX		3e-05
4b8c_D	727	Nuclease Module Of The Yeast Ccr4-Not Complex Lengt		3e-05
4b8c_D	727	Nuclease Module Of The Yeast Ccr4-Not Complex Lengt		1e-04
2omy_A	461	Crystal Structure Of Inla S192n/hec1 Complex Length		3e-05
2id5_A	477	Crystal Structure Of The Lingo-1 Ectodomain Length		4e-04

>pdb|3RIZ|A Chain A, Crystal Structure Of The Plant Steroid Receptor Bri1 Ectodomain Length = 772

Iteration: 1
 Score =  122 bits (306), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 118/384 (30%), Positives = 174/384 (45%), Gaps = 15/384 (3%)
Query: 20  NLESIIIPYTLLSGRIPSEIGALSKLEELALPYNSLTGTIPAEIGSLRNLVELDLSNNIL 79
           NLE + +     S  IP  +G  S L+ L +  N L+G     I +   L  L++S+N  
Sbjct: 198 NLEFLDVSSNNFSTGIPF-LGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQF 256
Query: 80  NGSIP-LEFGNLKDLDALRLRGNKLDGLIPSSI-GNLTNLTHLDLSLNQLSGRLPQEVGX 137
            G IP L    LK L  L L  NK  G IP  + G    LT LDLS N   G +P   G 
Sbjct: 257 VGPIPPLP---LKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGS 313
Query: 138 XXXXXXXXXXXXXXTGPIP-STLYHLNQLSNLYLAYNNLVGPLPKEVGNMKXXXXXXX-X 195
                         +G +P  TL  +  L  L L++N   G LP+ + N+          
Sbjct: 314 CSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLS 373
Query: 196 XXXXTGPIPSTIGY--LNLGGKLDLSHNRLDSPIPPTIGXXXXXXXXXXXXXXXXGLLPR 253
               +GPI   +     N   +L L +N     IPPT+                 G +P 
Sbjct: 374 SNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPS 433
Query: 254 EVGNLKYLDSLSLDGNNLIGSIPPTIGYLTNLTSLNLGYNQLSSSIPPELMNCSQLQNLV 313
            +G+L  L  L L  N L G IP  + Y+  L +L L +N L+  IP  L NC+ L  + 
Sbjct: 434 SLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWIS 493
Query: 314 LSHNTLSGIVPPEIGNLTHLRQLDLSHNFINGTIPSQLGYIPNISAVDLSKNNLSGVVPA 373
           LS+N L+G +P  IG L +L  L LS+N  +G IP++LG   ++  +DL+ N  +G +PA
Sbjct: 494 LSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPA 553
Query: 374 SV-----RIIPKLIVSENNLELEN 392
           ++     +I    I  +  + ++N
Sbjct: 554 AMFKQSGKIAANFIAGKRYVYIKN 577

>pdb|3RIZ|A Chain A, Crystal Structure Of The Plant Steroid Receptor Bri1 Ectodomain Length = 772

Iteration: 1
 Score = 45.4 bits (106), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 87/326 (26%), Positives = 122/326 (37%), Gaps = 52/326 (15%)
Query: 115 TNLTHLDLSLNQLSGRLPQEVGXXXXXXXXXXXXXXXTGPIPSTL---YHLNQLSNLYLA 171
            +LT LDLS N LSG +                    T   P  +     LN L  L L+
Sbjct: 97  ASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLS 156
Query: 172 YNNLVGP------LPKEVGNMKXXXXXXXXXXXXTGPIPSTIGYLNLGGKLDLSHNRLDS 225
            N++ G       L    G +K            +G +  +   +NL   LD+S N   +
Sbjct: 157 ANSISGANVVGWVLSDGCGELK---HLAISGNKISGDVDVS-RCVNL-EFLDVSSNNFST 211
Query: 226 PIPPTIGXXXXXXXXXXXXXXXXGLLPREVGNLKYLDSLSLDGNNLIGSIPPTIGYLTNL 285
            I P +G                G   R +     L  L++  N  +G IPP    L +L
Sbjct: 212 GI-PFLGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPPLP--LKSL 268
Query: 286 TSLNLGYNQLSSSIPPELMN-CSQLQNLVLSHNTLSGIVPPEIG---------------- 328
             L+L  N+ +  IP  L   C  L  L LS N   G VPP  G                
Sbjct: 269 QYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFS 328
Query: 329 ---------NLTHLRQLDLSHNFINGTIPSQLGYIPNISA----VDLSKNNLSGVVPASV 375
                     +  L+ LDLS N  +G +P  L    N+SA    +DLS NN SG +  ++
Sbjct: 329 GELPMDTLLKMRGLKVLDLSFNEFSGELPESL---TNLSASLLTLDLSSNNFSGPILPNL 385
Query: 376 RIIPKLIVSENNLELENSTSSENAPP 401
              PK  + E  L L+N+  +   PP
Sbjct: 386 CQNPKNTLQE--LYLQNNGFTGKIPP 409

>pdb|3RGX|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1 Length = 768

Iteration: 1
 Score =  122 bits (306), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 117/383 (30%), Positives = 173/383 (45%), Gaps = 13/383 (3%)
Query: 20  NLESIIIPYTLLSGRIPSEIGALSKLEELALPYNSLTGTIPAEIGSLRNLVELDLSNNIL 79
           NLE + +     S  IP  +G  S L+ L +  N L+G     I +   L  L++S+N  
Sbjct: 201 NLEFLDVSSNNFSTGIPF-LGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQF 259
Query: 80  NGSIPLEFGNLKDLDALRLRGNKLDGLIPSSI-GNLTNLTHLDLSLNQLSGRLPQEVGXX 138
            G IP     LK L  L L  NK  G IP  + G    LT LDLS N   G +P   G  
Sbjct: 260 VGPIPPL--PLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSC 317
Query: 139 XXXXXXXXXXXXXTGPIP-STLYHLNQLSNLYLAYNNLVGPLPKEVGNMKXXXXXXX-XX 196
                        +G +P  TL  +  L  L L++N   G LP+ + N+           
Sbjct: 318 SLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSS 377
Query: 197 XXXTGPIPSTIGY--LNLGGKLDLSHNRLDSPIPPTIGXXXXXXXXXXXXXXXXGLLPRE 254
              +GPI   +     N   +L L +N     IPPT+                 G +P  
Sbjct: 378 NNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSS 437
Query: 255 VGNLKYLDSLSLDGNNLIGSIPPTIGYLTNLTSLNLGYNQLSSSIPPELMNCSQLQNLVL 314
           +G+L  L  L L  N L G IP  + Y+  L +L L +N L+  IP  L NC+ L  + L
Sbjct: 438 LGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISL 497
Query: 315 SHNTLSGIVPPEIGNLTHLRQLDLSHNFINGTIPSQLGYIPNISAVDLSKNNLSGVVPAS 374
           S+N L+G +P  IG L +L  L LS+N  +G IP++LG   ++  +DL+ N  +G +PA+
Sbjct: 498 SNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAA 557
Query: 375 V-----RIIPKLIVSENNLELEN 392
           +     +I    I  +  + ++N
Sbjct: 558 MFKQSGKIAANFIAGKRYVYIKN 580

>pdb|3RGX|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1 Length = 768

Iteration: 1
 Score = 45.4 bits (106), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 87/326 (26%), Positives = 122/326 (37%), Gaps = 52/326 (15%)
Query: 115 TNLTHLDLSLNQLSGRLPQEVGXXXXXXXXXXXXXXXTGPIPSTL---YHLNQLSNLYLA 171
            +LT LDLS N LSG +                    T   P  +     LN L  L L+
Sbjct: 100 ASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLS 159
Query: 172 YNNLVGP------LPKEVGNMKXXXXXXXXXXXXTGPIPSTIGYLNLGGKLDLSHNRLDS 225
            N++ G       L    G +K            +G +  +   +NL   LD+S N   +
Sbjct: 160 ANSISGANVVGWVLSDGCGELK---HLAISGNKISGDVDVS-RCVNL-EFLDVSSNNFST 214
Query: 226 PIPPTIGXXXXXXXXXXXXXXXXGLLPREVGNLKYLDSLSLDGNNLIGSIPPTIGYLTNL 285
            I P +G                G   R +     L  L++  N  +G IPP    L +L
Sbjct: 215 GI-PFLGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPPLP--LKSL 271
Query: 286 TSLNLGYNQLSSSIPPELMN-CSQLQNLVLSHNTLSGIVPPEIG---------------- 328
             L+L  N+ +  IP  L   C  L  L LS N   G VPP  G                
Sbjct: 272 QYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFS 331
Query: 329 ---------NLTHLRQLDLSHNFINGTIPSQLGYIPNISA----VDLSKNNLSGVVPASV 375
                     +  L+ LDLS N  +G +P  L    N+SA    +DLS NN SG +  ++
Sbjct: 332 GELPMDTLLKMRGLKVLDLSFNEFSGELPESL---TNLSASLLTLDLSSNNFSGPILPNL 388
Query: 376 RIIPKLIVSENNLELENSTSSENAPP 401
              PK  + E  L L+N+  +   PP
Sbjct: 389 CQNPKNTLQE--LYLQNNGFTGKIPP 412

>pdb|1OGQ|A Chain A, The Crystal Structure Of Pgip (Polygalacturonase Inhibiting Protein), A Leucine Rich Repeat Protein Involved In Plant Defense Length = 313

Iteration: 1
 Score = 78.6 bits (192), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 66/221 (29%), Positives = 104/221 (47%), Gaps = 4/221 (1%)
Query: 154 PIPSTLYHLNQLSNLYLA-YNNLVGPLPKEVGNMKXXXXXXXXXXXXTGPIPSTIGYLNL 212
           PIPS+L +L  L+ LY+   NNLVGP+P  +  +             +G IP  +  +  
Sbjct: 67  PIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKT 126
Query: 213 GGKLDLSHNRLDSPIPPTIGXXXXXXXXXXXXXXXXGLLPREVGNL-KYLDSLSLDGNNL 271
              LD S+N L   +PP+I                 G +P   G+  K   S+++  N L
Sbjct: 127 LVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRL 186
Query: 272 IGSIPPTIGYLTNLTSLNLGYNQLSSSIPPELMNCSQLQNLVLSHNTLSGIVPPEIGNLT 331
            G IPPT   L NL  ++L  N L         +    Q + L+ N+L+  +  ++G   
Sbjct: 187 TGKIPPTFANL-NLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLG-KVGLSK 244
Query: 332 HLRQLDLSHNFINGTIPSQLGYIPNISAVDLSKNNLSGVVP 372
           +L  LDL +N I GT+P  L  +  + ++++S NNL G +P
Sbjct: 245 NLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIP 285

>pdb|1OGQ|A Chain A, The Crystal Structure Of Pgip (Polygalacturonase Inhibiting Protein), A Leucine Rich Repeat Protein Involved In Plant Defense Length = 313

Iteration: 1
 Score = 65.5 bits (158), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 42/135 (31%), Positives = 63/135 (46%), Gaps = 25/135 (18%)
Query: 251 LPREVGNLKYLDSLSLDG-NNLIGSIPPTIGYLTNLTSLNLGYNQLSSSIPPELMNCSQL 309
           +P  + NL YL+ L + G NNL+G IPP I  LT                        QL
Sbjct: 68  IPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLT------------------------QL 103
Query: 310 QNLVLSHNTLSGIVPPEIGNLTHLRQLDLSHNFINGTIPSQLGYIPNISAVDLSKNNLSG 369
             L ++H  +SG +P  +  +  L  LD S+N ++GT+P  +  +PN+  +    N +SG
Sbjct: 104 HYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISG 163
Query: 370 VVPASVRIIPKLIVS 384
            +P S     KL  S
Sbjct: 164 AIPDSYGSFSKLFTS 178

>pdb|2OMV|A Chain A, Crystal Structure Of Inla S192n Y369s/hec1 Complex Length = 461

Iteration: 1
 Score = 47.0 bits (110), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 49/137 (35%), Positives = 74/137 (54%), Gaps = 13/137 (9%)
Query: 255 VGNLKYLDSLSLDGNNL--IGSIPPTIGYLTNLTSLNLGYNQLSSSIPPELMNCSQLQNL 312
           +G L  LD LSL+GN L  IG    T+  LTNLT L+L  NQ+S+  P  L   ++L  L
Sbjct: 212 LGILTNLDELSLNGNQLKDIG----TLASLTNLTDLDLANNQISNLAP--LSGLTKLTEL 265
Query: 313 VLSHNTLSGIVPPEIGNLTHLRQLDLSHNFINGTIPSQLGYIPNISAVDLSKNNLSGVVP 372
            L  N +S I P  +  LT L  L+L+ N +    P  +  + N++ + L  NN+S + P
Sbjct: 266 KLGANQISNISP--LAGLTALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNISDISP 321
Query: 373 -ASVRIIPKLIVSENNL 388
            +S+  + +L  S N +
Sbjct: 322 VSSLTKLQRLFFSNNKV 338

>pdb|2OMU|A Chain A, Crystal Structure Of Inla G194s+s Y369s/hec1 Complex Length = 462

Iteration: 1
 Score = 47.0 bits (110), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 49/137 (35%), Positives = 74/137 (54%), Gaps = 13/137 (9%)
Query: 255 VGNLKYLDSLSLDGNNL--IGSIPPTIGYLTNLTSLNLGYNQLSSSIPPELMNCSQLQNL 312
           +G L  LD LSL+GN L  IG    T+  LTNLT L+L  NQ+S+  P  L   ++L  L
Sbjct: 213 LGILTNLDELSLNGNQLKDIG----TLASLTNLTDLDLANNQISNLAP--LSGLTKLTEL 266
Query: 313 VLSHNTLSGIVPPEIGNLTHLRQLDLSHNFINGTIPSQLGYIPNISAVDLSKNNLSGVVP 372
            L  N +S I P  +  LT L  L+L+ N +    P  +  + N++ + L  NN+S + P
Sbjct: 267 KLGANQISNISP--LAGLTALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNISDISP 322
Query: 373 -ASVRIIPKLIVSENNL 388
            +S+  + +L  S N +
Sbjct: 323 VSSLTKLQRLFFSNNKV 339

>pdb|1O6S|A Chain A, Internalin (Listeria Monocytogenes) E-Cadherin (Human) Recognition Complex Length = 466

Iteration: 1
 Score = 46.2 bits (108), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 46/122 (37%), Positives = 66/122 (54%), Gaps = 12/122 (9%)
Query: 255 VGNLKYLDSLSLDGNNL--IGSIPPTIGYLTNLTSLNLGYNQLSSSIPPELMNCSQLQNL 312
           +G L  LD LSL+GN L  IG    T+  LTNLT L+L  NQ+S+  P  L   ++L  L
Sbjct: 217 LGILTNLDELSLNGNQLKDIG----TLASLTNLTDLDLANNQISNLAP--LSGLTKLTEL 270
Query: 313 VLSHNTLSGIVPPEIGNLTHLRQLDLSHNFINGTIPSQLGYIPNISAVDLSKNNLSGVVP 372
            L  N +S I P  +  LT L  L+L+ N +    P  +  + N++ + L  NN+S + P
Sbjct: 271 KLGANQISNISP--LAGLTALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNISDISP 326
Query: 373 AS 374
            S
Sbjct: 327 VS 328

>pdb|2OMZ|A Chain A, Crystal Structure Of Inla Y369a/hec1 Complex Length = 466

Iteration: 1
 Score = 46.2 bits (108), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 46/122 (37%), Positives = 66/122 (54%), Gaps = 12/122 (9%)
Query: 255 VGNLKYLDSLSLDGNNL--IGSIPPTIGYLTNLTSLNLGYNQLSSSIPPELMNCSQLQNL 312
           +G L  LD LSL+GN L  IG    T+  LTNLT L+L  NQ+S+  P  L   ++L  L
Sbjct: 216 LGILTNLDELSLNGNQLKDIG----TLASLTNLTDLDLANNQISNLAP--LSGLTKLTEL 269
Query: 313 VLSHNTLSGIVPPEIGNLTHLRQLDLSHNFINGTIPSQLGYIPNISAVDLSKNNLSGVVP 372
            L  N +S I P  +  LT L  L+L+ N +    P  +  + N++ + L  NN+S + P
Sbjct: 270 KLGANQISNISP--LAGLTALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNISDISP 325
Query: 373 AS 374
            S
Sbjct: 326 VS 327

>pdb|2OMT|A Chain A, Crystal Structure Of Inla G194s+sHEC1 COMPLEX Length = 462

Iteration: 1
 Score = 46.2 bits (108), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 46/122 (37%), Positives = 66/122 (54%), Gaps = 12/122 (9%)
Query: 255 VGNLKYLDSLSLDGNNL--IGSIPPTIGYLTNLTSLNLGYNQLSSSIPPELMNCSQLQNL 312
           +G L  LD LSL+GN L  IG    T+  LTNLT L+L  NQ+S+  P  L   ++L  L
Sbjct: 213 LGILTNLDELSLNGNQLKDIG----TLASLTNLTDLDLANNQISNLAP--LSGLTKLTEL 266
Query: 313 VLSHNTLSGIVPPEIGNLTHLRQLDLSHNFINGTIPSQLGYIPNISAVDLSKNNLSGVVP 372
            L  N +S I P  +  LT L  L+L+ N +    P  +  + N++ + L  NN+S + P
Sbjct: 267 KLGANQISNISP--LAGLTALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNISDISP 322
Query: 373 AS 374
            S
Sbjct: 323 VS 324

>pdb|2OMX|A Chain A, Crystal Structure Of Inla S192n G194s+sHEC1 COMPLEX Length = 462

Iteration: 1
 Score = 46.2 bits (108), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 46/122 (37%), Positives = 66/122 (54%), Gaps = 12/122 (9%)
Query: 255 VGNLKYLDSLSLDGNNL--IGSIPPTIGYLTNLTSLNLGYNQLSSSIPPELMNCSQLQNL 312
           +G L  LD LSL+GN L  IG    T+  LTNLT L+L  NQ+S+  P  L   ++L  L
Sbjct: 213 LGILTNLDELSLNGNQLKDIG----TLASLTNLTDLDLANNQISNLAP--LSGLTKLTEL 266
Query: 313 VLSHNTLSGIVPPEIGNLTHLRQLDLSHNFINGTIPSQLGYIPNISAVDLSKNNLSGVVP 372
            L  N +S I P  +  LT L  L+L+ N +    P  +  + N++ + L  NN+S + P
Sbjct: 267 KLGANQISNISP--LAGLTALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNISDISP 322
Query: 373 AS 374
            S
Sbjct: 323 VS 324

>pdb|4B8C|D Chain D, Nuclease Module Of The Yeast Ccr4-Not Complex Length = 727

Iteration: 1
 Score = 46.2 bits (108), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 38/112 (33%), Positives = 57/112 (50%), Gaps = 14/112 (12%)
Query: 2   DNNGNAAELSQLNFTCFPNLESIIIPYTLLS---------GRIPSEIGALSKLEELALPY 52
           D   +A +LS L      N+ + I  Y  L+           +P+EI  LS L  L L +
Sbjct: 223 DQLWHALDLSNLQIF---NISANIFKYDFLTRLYLNGNSLTELPAEIKNLSNLRVLDLSH 279
Query: 53  NSLTGTIPAEIGSLRNLVELDLSNNILNGSIPLEFGNLKDLDALRLRGNKLD 104
           N LT ++PAE+GS   L      +N++  ++P EFGNL +L  L + GN L+
Sbjct: 280 NRLT-SLPAELGSCFQLKYFYFFDNMVT-TLPWEFGNLCNLQFLGVEGNPLE 329

>pdb|4B8C|D Chain D, Nuclease Module Of The Yeast Ccr4-Not Complex Length = 727

Iteration: 1
 Score = 44.7 bits (104), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 31/87 (35%), Positives = 50/87 (57%), Gaps = 3/87 (3%)
Query: 255 VGNLKYLDSLSLDGNNLIGSIPPTIGYLTNLTSLNLGYNQLSSSIPPELMNCSQLQNLVL 314
           +    +L  L L+GN+L   +P  I  L+NL  L+L +N+L +S+P EL +C QL+    
Sbjct: 243 IFKYDFLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRL-TSLPAELGSCFQLKYFYF 300
Query: 315 SHNTLSGIVPPEIGNLTHLRQLDLSHN 341
             N ++ + P E GNL +L+ L +  N
Sbjct: 301 FDNMVTTL-PWEFGNLCNLQFLGVEGN 326

>pdb|2OMY|A Chain A, Crystal Structure Of Inla S192n/hec1 Complex Length = 461

Iteration: 1
 Score = 46.2 bits (108), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 46/122 (37%), Positives = 66/122 (54%), Gaps = 12/122 (9%)
Query: 255 VGNLKYLDSLSLDGNNL--IGSIPPTIGYLTNLTSLNLGYNQLSSSIPPELMNCSQLQNL 312
           +G L  LD LSL+GN L  IG    T+  LTNLT L+L  NQ+S+  P  L   ++L  L
Sbjct: 212 LGILTNLDELSLNGNQLKDIG----TLASLTNLTDLDLANNQISNLAP--LSGLTKLTEL 265
Query: 313 VLSHNTLSGIVPPEIGNLTHLRQLDLSHNFINGTIPSQLGYIPNISAVDLSKNNLSGVVP 372
            L  N +S I P  +  LT L  L+L+ N +    P  +  + N++ + L  NN+S + P
Sbjct: 266 KLGANQISNISP--LAGLTALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNISDISP 321
Query: 373 AS 374
            S
Sbjct: 322 VS 323

>pdb|2ID5|A Chain A, Crystal Structure Of The Lingo-1 Ectodomain Length = 477

Iteration: 1
 Score = 42.7 bits (99), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 82/321 (25%), Positives = 117/321 (36%), Gaps = 52/321 (16%)
Query: 62  EIGSLRNLVELDLSNNILNGSIPLEFGNLKDLDALRLRGNKLDGLIPSSIGN-LTNLTHL 120
           E  S  +L EL+L+ NI++   P  F NL +L  L LR N+L  LIP  +   L+NLT L
Sbjct: 51  EFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLK-LIPLGVFTGLSNLTKL 109
Query: 121 DLSLNQLSGRLPQEVGXXXXXXXXXXXXXXXTGPIPSTLYHLNQLSNLYLAYNNLVGPLP 180
           D+S N++   L                              LN L  L L   NL   +P
Sbjct: 110 DISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTS-IP 168
Query: 181 KEVGNMKXXXXXXXXXXXXTGPIPSTIGYLNLGGKLDLSHNRLDSPIPPTIGXXXXXXXX 240
            E                  G I   + +LN+    D S  RL                 
Sbjct: 169 TEA------------LSHLHGLIVLRLRHLNINAIRDYSFKRL----------------- 199
Query: 241 XXXXXXXXGLLPREVGNLKYLD-------------SLSLDGNNLIGSIPPTIGYLTNLTS 287
                    L   E+ +  YLD             SLS+   NL       + +L  L  
Sbjct: 200 -------YRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVYLRF 252
Query: 288 LNLGYNQLSSSIPPELMNCSQLQNLVLSHNTLSGIVPPEIGNLTHLRQLDLSHNFINGTI 347
           LNL YN +S+     L    +LQ + L    L+ + P     L +LR L++S N +    
Sbjct: 253 LNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTTLE 312
Query: 348 PSQLGYIPNISAVDLSKNNLS 368
            S    + N+  + L  N L+
Sbjct: 313 ESVFHSVGNLETLILDSNPLA 333

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	408
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	1e-104
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	1e-100
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	2e-97
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	1e-95
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	3e-93
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	1e-92
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	1e-86
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	7e-83
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	1e-79
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	2e-79
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	3e-74
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	7e-72
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	1e-42
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	4e-38
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	8e-67
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	4e-66
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	1e-65
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	3e-61
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	3e-58
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	7e-39
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	7e-66
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	4e-63
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	2e-60
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	6e-52
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	5e-43
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	2e-39
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	2e-35
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	2e-26
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	4e-22
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	2e-62
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	2e-54
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	1e-51
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	6e-37
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	2e-33
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	4e-09
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	2e-55
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	6e-55
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	7e-54
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	3e-51
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	2e-49
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	6e-26
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	2e-52
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	3e-50
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	2e-49
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	1e-41
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	1e-39
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	1e-51
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	1e-51
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	7e-51
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	1e-49
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	4e-48
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	7e-47
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	7e-28
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	3e-10
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	3e-47
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	3e-41
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	1e-20
1o6v_A	466	Internalin A; bacterial infection, extracellular r	1e-45
1o6v_A	466	Internalin A; bacterial infection, extracellular r	3e-44
1o6v_A	466	Internalin A; bacterial infection, extracellular r	2e-38
1o6v_A	466	Internalin A; bacterial infection, extracellular r	5e-33
1o6v_A	466	Internalin A; bacterial infection, extracellular r	4e-16
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	1e-44
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	5e-44
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	1e-43
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	5e-43
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	8e-43
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	5e-37
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	6e-35
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	3e-25
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	4e-21
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	3e-06
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	4e-43
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	1e-25
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	1e-06
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	6e-43
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	2e-40
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	3e-40
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	5e-18
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	9e-17
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	9e-43
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	3e-41
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	2e-29
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	4e-40
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	4e-37
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	2e-35
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	9e-31
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	2e-19
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	6e-40
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	7e-34
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	1e-16
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	2e-10
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	6e-40
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	8e-40
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	5e-38
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	1e-37
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	2e-32
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	4e-22
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	1e-15
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	5e-10
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	4e-38
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	9e-38
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	2e-37
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	5e-37
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	1e-35
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	2e-35
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	2e-21
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	9e-38
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	9e-35
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	8e-23
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	6e-37
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	9e-34
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	1e-32
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	1e-30
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	8e-28
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	7e-25
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	2e-21
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	1e-35
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	5e-27
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	1e-25
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	2e-20
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	3e-07
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	2e-35
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	1e-24
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	2e-24
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	5e-19
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	2e-14
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	7e-14
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	2e-07
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	4e-35
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	6e-34
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	1e-32
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	4e-26
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	3e-24
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	9e-23
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	6e-35
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	8e-31
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	1e-28
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	3e-22
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	3e-11
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	1e-32
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	2e-32
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	3e-32
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	4e-22
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	4e-31
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	3e-29
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	6e-29
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	2e-15
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	8e-31
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	2e-28
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	8e-20
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	5e-15
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	3e-30
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	2e-29
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	4e-29
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	7e-28
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	1e-26
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	7e-24
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	8e-20
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	2e-28
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	5e-26
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	2e-20
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	9e-27
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	3e-26
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	8e-22
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	8e-20
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	8e-16
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	1e-24
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	2e-23
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	5e-23
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	1e-24
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	6e-22
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	3e-21
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	2e-24
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	3e-21
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	9e-13
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	4e-23
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	4e-20
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	2e-17
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	5e-14
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	4e-23
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	3e-22
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	1e-16
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	5e-16
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	7e-23
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	1e-22
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	2e-19
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	8e-22
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	2e-20
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	5e-20
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	6e-19
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	1e-11
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	2e-21
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	2e-18
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	9e-18
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	8e-17
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	2e-14
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	1e-13
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	3e-08
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	2e-20
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	8e-15
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	2e-12
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	3e-11
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	3e-19
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	3e-18
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	3e-17
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	7e-17
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	9e-11
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	3e-05
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	4e-19
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	1e-17
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	3e-17
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	2e-08
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	1e-18
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	1e-16
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	9e-11
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	3e-10
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	3e-18
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	7e-18
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	2e-16
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	8e-13
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	2e-17
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	2e-17
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	6e-15
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	1e-14
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	3e-12
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	2e-11
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	4e-07
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	3e-17
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	4e-17
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	2e-14
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	6e-16
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	4e-13
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	1e-08
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	1e-15
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	1e-13
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	3e-13
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	1e-12
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	2e-12
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	5e-12
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	4e-11
3m19_A	251	Variable lymphocyte receptor A diversity region; a	3e-14
3m19_A	251	Variable lymphocyte receptor A diversity region; a	8e-14
3m19_A	251	Variable lymphocyte receptor A diversity region; a	7e-13
3m19_A	251	Variable lymphocyte receptor A diversity region; a	6e-11
3m19_A	251	Variable lymphocyte receptor A diversity region; a	4e-10
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	5e-14
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	2e-12
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	3e-12
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	1e-11
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	2e-07
3e6j_A	229	Variable lymphocyte receptor diversity region; var	5e-14
3e6j_A	229	Variable lymphocyte receptor diversity region; var	3e-13
3e6j_A	229	Variable lymphocyte receptor diversity region; var	4e-12
3e6j_A	229	Variable lymphocyte receptor diversity region; var	2e-11
3e6j_A	229	Variable lymphocyte receptor diversity region; var	2e-09
3e6j_A	229	Variable lymphocyte receptor diversity region; var	5e-09
3e6j_A	229	Variable lymphocyte receptor diversity region; var	6e-06
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	1e-13
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	5e-13
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	1e-06
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	1e-05
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	5e-13
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	4e-12
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	1e-06
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	1e-11
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	8e-09
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	2e-11
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	8e-10
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	1e-09
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	3e-06
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	1e-04
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	2e-11
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	4e-11
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	1e-10
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	5e-10
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	3e-08
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	3e-07
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	3e-07
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	2e-06
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	3e-11
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	4e-11
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	3e-10
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	2e-09
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	8e-08
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	3e-07
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	2e-04
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	4e-10
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	1e-07
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	6e-07
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	1e-05
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	1e-09
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	5e-09
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	6e-09
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	7e-05
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	2e-09
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	3e-09
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	3e-09
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	2e-06
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	3e-09
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	3e-07
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	5e-09
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	6e-07
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	2e-08
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	5e-07
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	3e-04
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	5e-08
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	1e-05
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	2e-04
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	6e-08
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	4e-07
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	5e-07
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	6e-06
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	7e-06
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	2e-04
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	8e-08
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	1e-05
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	2e-04
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	2e-07
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	5e-07
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	2e-07
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	1e-06
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	9e-05
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	2e-04
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	4e-04
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	4e-04
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	1e-06
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	1e-06
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	7e-05
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	2e-04
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	3e-04
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	2e-05
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	4e-05
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	1e-04
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	4e-04

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  324 bits (832), Expect = e-104
 Identities = 132/362 (36%), Positives = 189/362 (52%), Gaps = 8/362 (2%)

Query: 18  FPNLESIIIPYTLLSGRIPSEIGALSKLEELALPYNSLTGTIPAEIGSLRNLVELDLSNN 77
             NLE + +     S  IP  +G  S L+ L +  N L+G     I +   L  L++S+N
Sbjct: 199 CVNLEFLDVSSNNFSTGIPF-LGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSN 257

Query: 78  ILNGSIPLEFGNLKDLDALRLRGNKLDGLIPSSI-GNLTNLTHLDLSLNQLSGRLPQEVG 136
              G IP     LK L  L L  NK  G IP  + G    LT LDLS N   G +P   G
Sbjct: 258 QFVGPIPPL--PLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFG 315

Query: 137 NLKNLLSLFLDNNNLTGPIP-STLYHLNQLSNLYLAYNNLVGPLPKEVGNMK-NLDSLLL 194
           +   L SL L +NN +G +P  TL  +  L  L L++N   G LP+ + N+  +L +L L
Sbjct: 316 SCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDL 375

Query: 195 NRNSLTGPIPSTIGYLNLGG--KLDLSHNRLDSPIPPTIGNLTNLTSLDLSSNQLSGLLP 252
           + N+ +GPI   +         +L L +N     IPPT+ N + L SL LS N LSG +P
Sbjct: 376 SSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIP 435

Query: 253 REVGNLKYLDSLSLDGNNLIGSIPPTIGYLTNLTSLNLGYNQLSSSIPPELMNCSQLQNL 312
             +G+L  L  L L  N L G IP  + Y+  L +L L +N L+  IP  L NC+ L  +
Sbjct: 436 SSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWI 495

Query: 313 VLSHNTLSGIVPPEIGNLTHLRQLDLSHNFINGTIPSQLGYIPNISAVDLSKNNLSGVVP 372
            LS+N L+G +P  IG L +L  L LS+N  +G IP++LG   ++  +DL+ N  +G +P
Sbjct: 496 SLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIP 555

Query: 373 AS 374
           A+
Sbjct: 556 AA 557

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  313 bits (805), Expect = e-100
 Identities = 114/362 (31%), Positives = 174/362 (48%), Gaps = 8/362 (2%)

Query: 15  FTCFPNLESIIIPYTLLSGRIPSEIG--ALSKLEELALPYNSLTGTIPAEIGSLRNLVEL 72
                +L ++ +     SG I   +     + L+EL L  N  TG IP  + +   LV L
Sbjct: 364 TNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSL 423

Query: 73  DLSNNILNGSIPLEFGNLKDLDALRLRGNKLDGLIPSSIGNLTNLTHLDLSLNQLSGRLP 132
            LS N L+G+IP   G+L  L  L+L  N L+G IP  +  +  L  L L  N L+G +P
Sbjct: 424 HLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIP 483

Query: 133 QEVGNLKNLLSLFLDNNNLTGPIPSTLYHLNQLSNLYLAYNNLVGPLPKEVGNMKNLDSL 192
             + N  NL  + L NN LTG IP  +  L  L+ L L+ N+  G +P E+G+ ++L  L
Sbjct: 484 SGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWL 543

Query: 193 LLNRNSLTGPIPSTIGYLNLGGKLDLSHNRLDSPIPPTIGNLTNLTSLDLSSN--QLSGL 250
            LN N   G IP+ +          ++ N +       I N         + N  +  G+
Sbjct: 544 DLNTNLFNGTIPAAMFKQ----SGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGI 599

Query: 251 LPREVGNLKYLDSLSLDGNNLIGSIPPTIGYLTNLTSLNLGYNQLSSSIPPELMNCSQLQ 310
              ++  L   +  ++      G   PT     ++  L++ YN LS  IP E+ +   L 
Sbjct: 600 RSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLF 659

Query: 311 NLVLSHNTLSGIVPPEIGNLTHLRQLDLSHNFINGTIPSQLGYIPNISAVDLSKNNLSGV 370
            L L HN +SG +P E+G+L  L  LDLS N ++G IP  +  +  ++ +DLS NNLSG 
Sbjct: 660 ILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGP 719

Query: 371 VP 372
           +P
Sbjct: 720 IP 721

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  306 bits (786), Expect = 2e-97
 Identities = 124/380 (32%), Positives = 188/380 (49%), Gaps = 12/380 (3%)

Query: 18  FPNLESIIIPYTLLSGRIPSEIGALS-KLEELALPYNSLTGTIPAEIG--SLRNLVELDL 74
              L+ + + +   SG +P  +  LS  L  L L  N+ +G I   +       L EL L
Sbjct: 342 MRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYL 401

Query: 75  SNNILNGSIPLEFGNLKDLDALRLRGNKLDGLIPSSIGNLTNLTHLDLSLNQLSGRLPQE 134
            NN   G IP    N  +L +L L  N L G IPSS+G+L+ L  L L LN L G +PQE
Sbjct: 402 QNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQE 461

Query: 135 VGNLKNLLSLFLDNNNLTGPIPSTLYHLNQLSNLYLAYNNLVGPLPKEVGNMKNLDSLLL 194
           +  +K L +L LD N+LTG IPS L +   L+ + L+ N L G +PK +G ++NL  L L
Sbjct: 462 LMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKL 521

Query: 195 NRNSLTGPIPSTIGYLNLGGKLDLSHNRLDSPIPPTIGNLTNLTSLDLSSNQLSGLLPRE 254
           + NS +G IP+ +G       LDL+ N  +  IP  +       S  +++N ++G     
Sbjct: 522 SNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQ----SGKIAANFIAGKRYVY 577

Query: 255 VGNLKYLDSLSLDGN--NLIGSIPPTIGYLTNLTSLNLGYNQLSSSIPPELMNCSQLQNL 312
           + N          GN     G     +  L+     N+          P   N   +  L
Sbjct: 578 IKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFL 637

Query: 313 VLSHNTLSGIVPPEIGNLTHLRQLDLSHNFINGTIPSQLGYIPNISAVDLSKNNLSGVVP 372
            +S+N LSG +P EIG++ +L  L+L HN I+G+IP ++G +  ++ +DLS N L G +P
Sbjct: 638 DMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIP 697

Query: 373 ASVRIIPKLI---VSENNLE 389
            ++  +  L    +S NNL 
Sbjct: 698 QAMSALTMLTEIDLSNNNLS 717

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  302 bits (775), Expect = 1e-95
 Identities = 122/383 (31%), Positives = 174/383 (45%), Gaps = 17/383 (4%)

Query: 19  PNLESIIIPYTLLSGRIPSEIGA-LSKLEELALPYNSLTGTIPAEI---GSLRNLVELDL 74
             L+ + +    L        G  L+ LE L L  NS++G              L  L +
Sbjct: 126 SGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSISGANVVGWVLSDGCGELKHLAI 185

Query: 75  SNNILNGSIPLEFGNLKDLDALRLRGNKLDGLIPSSIGNLTNLTHLDLSLNQLSGRLPQE 134
           S N ++G + +      +L+ L +  N     IP  +G+ + L HLD+S N+LSG   + 
Sbjct: 186 SGNKISGDVDV--SRCVNLEFLDVSSNNFSTGIP-FLGDCSALQHLDISGNKLSGDFSRA 242

Query: 135 VGNLKNLLSLFLDNNNLTGPIPSTLYHLNQLSNLYLAYNNLVGPLPKEV-GNMKNLDSLL 193
           +     L  L + +N   GPIP     L  L  L LA N   G +P  + G    L  L 
Sbjct: 243 ISTCTELKLLNISSNQFVGPIPPLP--LKSLQYLSLAENKFTGEIPDFLSGACDTLTGLD 300

Query: 194 LNRNSLTGPIPSTIGYLNLGGKLDLSHNRLDSPIPP-TIGNLTNLTSLDLSSNQLSGLLP 252
           L+ N   G +P   G  +L   L LS N     +P  T+  +  L  LDLS N+ SG LP
Sbjct: 301 LSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELP 360

Query: 253 REVGNLKY-LDSLSLDGNNLIGSIPPTIG--YLTNLTSLNLGYNQLSSSIPPELMNCSQL 309
             + NL   L +L L  NN  G I P +       L  L L  N  +  IPP L NCS+L
Sbjct: 361 ESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSEL 420

Query: 310 QNLVLSHNTLSGIVPPEIGNLTHLRQLDLSHNFINGTIPSQLGYIPNISAVDLSKNNLSG 369
            +L LS N LSG +P  +G+L+ LR L L  N + G IP +L Y+  +  + L  N+L+G
Sbjct: 421 VSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTG 480

Query: 370 VVPASVRIIPKLIV---SENNLE 389
            +P+ +     L     S N L 
Sbjct: 481 EIPSGLSNCTNLNWISLSNNRLT 503

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  295 bits (757), Expect = 3e-93
 Identities = 113/352 (32%), Positives = 165/352 (46%), Gaps = 8/352 (2%)

Query: 11  SQLNFTCFPNLESIIIPYTLLSGRIPSEIGALSKLEELALPYNSLTGTIPAEIGSLRNLV 70
             L       L+ + +     +G+IP  +   S+L  L L +N L+GTIP+ +GSL  L 
Sbjct: 386 PNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLR 445

Query: 71  ELDLSNNILNGSIPLEFGNLKDLDALRLRGNKLDGLIPSSIGNLTNLTHLDLSLNQLSGR 130
           +L L  N+L G IP E   +K L+ L L  N L G IPS + N TNL  + LS N+L+G 
Sbjct: 446 DLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGE 505

Query: 131 LPQEVGNLKNLLSLFLDNNNLTGPIPSTLYHLNQLSNLYLAYNNLVGPLPKEVGNMKNLD 190
           +P+ +G L+NL  L L NN+ +G IP+ L     L  L L  N   G +P  +       
Sbjct: 506 IPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQ---- 561

Query: 191 SLLLNRNSLTGPIPSTIGYLNLGGKLDLSHN--RLDSPIPPTIGNLTNLTSLDLSSNQLS 248
           S  +  N + G     I    +  +   + N           +  L+     +++S    
Sbjct: 562 SGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYG 621

Query: 249 GLLPREVGNLKYLDSLSLDGNNLIGSIPPTIGYLTNLTSLNLGYNQLSSSIPPELMNCSQ 308
           G       N   +  L +  N L G IP  IG +  L  LNLG+N +S SIP E+ +   
Sbjct: 622 GHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRG 681

Query: 309 LQNLVLSHNTLSGIVPPEIGNLTHLRQLDLSHNFINGTIPS--QLGYIPNIS 358
           L  L LS N L G +P  +  LT L ++DLS+N ++G IP   Q    P   
Sbjct: 682 LNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPEMGQFETFPPAK 733

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  294 bits (754), Expect = 1e-92
 Identities = 116/390 (29%), Positives = 175/390 (44%), Gaps = 20/390 (5%)

Query: 14  NFTCFPNLESIIIPYTLLSGRIPSEIGALSKLEELALPYNSLTGTIPA--EIGSLRNLVE 71
           +      LES+ +  + ++G +       + L  L L  NSL+G +     +GS   L  
Sbjct: 72  SLLSLTGLESLFLSNSHINGSVS-GFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKF 130

Query: 72  LDLSNNILNGSIPLE-FGNLKDLDALRLRGNKLDGLIPSSI---GNLTNLTHLDLSLNQL 127
           L++S+N L+    +     L  L+ L L  N + G              L HL +S N++
Sbjct: 131 LNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSISGANVVGWVLSDGCGELKHLAISGNKI 190

Query: 128 SGRLPQEVGNLKNLLSLFLDNNNLTGPIPSTLYHLNQLSNLYLAYNNLVGPLPKEVGNMK 187
           SG +   V    NL  L + +NN +  IP  L   + L +L ++ N L G   + +    
Sbjct: 191 SGDVD--VSRCVNLEFLDVSSNNFSTGIPF-LGDCSALQHLDISGNKLSGDFSRAISTCT 247

Query: 188 NLDSLLLNRNSLTGPIPSTIGYLNLGGKLDLSHNRLDSPIPPTI-GNLTNLTSLDLSSNQ 246
            L  L ++ N   GPIP     L     L L+ N+    IP  + G    LT LDLS N 
Sbjct: 248 ELKLLNISSNQFVGPIPPLP--LKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNH 305

Query: 247 LSGLLPREVGNLKYLDSLSLDGNNLIGSIPP-TIGYLTNLTSLNLGYNQLSSSIPPELMN 305
             G +P   G+   L+SL+L  NN  G +P  T+  +  L  L+L +N+ S  +P  L N
Sbjct: 306 FYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTN 365

Query: 306 CS-QLQNLVLSHNTLSGIVPPEIGN--LTHLRQLDLSHNFINGTIPSQLGYIPNISAVDL 362
            S  L  L LS N  SG + P +       L++L L +N   G IP  L     + ++ L
Sbjct: 366 LSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHL 425

Query: 363 SKNNLSGVVPASVRIIPKLIV---SENNLE 389
           S N LSG +P+S+  + KL       N LE
Sbjct: 426 SFNYLSGTIPSSLGSLSKLRDLKLWLNMLE 455

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  278 bits (713), Expect = 1e-86
 Identities = 108/377 (28%), Positives = 166/377 (44%), Gaps = 20/377 (5%)

Query: 27  PYTLLSGRIPSEIGALSKLEELALPYNSLTGTIPAEIGSLRNLVELDLSNNILNGSIP-- 84
           P  +    + S + +L+ LE L L  + + G++        +L  LDLS N L+G +   
Sbjct: 61  PLNVGFSAVSSSLLSLTGLESLFLSNSHINGSVS-GFKCSASLTSLDLSRNSLSGPVTTL 119

Query: 85  LEFGNLKDLDALRLRGNKLDGLIPSSIG-NLTNLTHLDLSLNQLSGRLPQEV---GNLKN 140
              G+   L  L +  N LD     S G  L +L  LDLS N +SG              
Sbjct: 120 TSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSISGANVVGWVLSDGCGE 179

Query: 141 LLSLFLDNNNLTGPIPSTLYHLNQLSNLYLAYNNLVGPLPKEVGNMKNLDSLLLNRNSLT 200
           L  L +  N ++G +   +     L  L ++ NN    +P  +G+   L  L ++ N L+
Sbjct: 180 LKHLAISGNKISGDVD--VSRCVNLEFLDVSSNNFSTGIP-FLGDCSALQHLDISGNKLS 236

Query: 201 GPIPSTIGYLNLGGKLDLSHNRLDSPIPPTIGNLTNLTSLDLSSNQLSGLLPREV-GNLK 259
           G     I        L++S N+   PIPP    L +L  L L+ N+ +G +P  + G   
Sbjct: 237 GDFSRAISTCTELKLLNISSNQFVGPIPPL--PLKSLQYLSLAENKFTGEIPDFLSGACD 294

Query: 260 YLDSLSLDGNNLIGSIPPTIGYLTNLTSLNLGYNQLSSSIPPE-LMNCSQLQNLVLSHNT 318
            L  L L GN+  G++PP  G  + L SL L  N  S  +P + L+    L+ L LS N 
Sbjct: 295 TLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNE 354

Query: 319 LSGIVPPEIGNLT-HLRQLDLSHNFINGTIPSQLG--YIPNISAVDLSKNNLSGVVPASV 375
            SG +P  + NL+  L  LDLS N  +G I   L       +  + L  N  +G +P ++
Sbjct: 355 FSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTL 414

Query: 376 RIIPKLIV---SENNLE 389
               +L+    S N L 
Sbjct: 415 SNCSELVSLHLSFNYLS 431

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  268 bits (687), Expect = 7e-83
 Identities = 107/364 (29%), Positives = 169/364 (46%), Gaps = 20/364 (5%)

Query: 40  GALSKLEELALPYNSLTGTIPAEIGSLRNLVELDLSNNILNGSIPLEFGNLKDLDALRLR 99
             ++ ++  + P N     + + + SL  L  L LSN+ +NGS+   F     L +L L 
Sbjct: 50  DKVTSIDLSSKPLNVGFSAVSSSLLSLTGLESLFLSNSHINGSVS-GFKCSASLTSLDLS 108

Query: 100 GNKLDGLIPS--SIGNLTNLTHLDLSLNQLSGRLPQEVG-NLKNLLSLFLDNNNLTGPIP 156
            N L G + +  S+G+ + L  L++S N L        G  L +L  L L  N+++G   
Sbjct: 109 RNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSISGANV 168

Query: 157 STLYHLNQLSNL---YLAYNNLVGPLPKEVGNMKNLDSLLLNRNSLTGPIPSTIGYLNLG 213
                 +    L    ++ N + G +   V    NL+ L ++ N+ +  IP  +G  +  
Sbjct: 169 VGWVLSDGCGELKHLAISGNKISGDVD--VSRCVNLEFLDVSSNNFSTGIPF-LGDCSAL 225

Query: 214 GKLDLSHNRLDSPIPPTIGNLTNLTSLDLSSNQLSGLLPREVGNLKYLDSLSLDGNNLIG 273
             LD+S N+L       I   T L  L++SSNQ  G +P     LK L  LSL  N   G
Sbjct: 226 QHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPPL--PLKSLQYLSLAENKFTG 283

Query: 274 SIPPTI-GYLTNLTSLNLGYNQLSSSIPPELMNCSQLQNLVLSHNTLSGIVPPE-IGNLT 331
            IP  + G    LT L+L  N    ++PP   +CS L++L LS N  SG +P + +  + 
Sbjct: 284 EIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMR 343

Query: 332 HLRQLDLSHNFINGTIPSQLGYI-PNISAVDLSKNNLSGVVPASVRIIPK-----LIVSE 385
            L+ LDLS N  +G +P  L  +  ++  +DLS NN SG +  ++   PK     L +  
Sbjct: 344 GLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQN 403

Query: 386 NNLE 389
           N   
Sbjct: 404 NGFT 407

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score =  247 bits (632), Expect = 1e-79
 Identities = 85/274 (31%), Positives = 127/274 (46%), Gaps = 7/274 (2%)

Query: 72  LDLSNNILNGSIPLEFGNLKDLDALRLRGNKLDG--LIPSSIGNLTNLTHLDLS-LNQLS 128
            D  N    G +         ++ L L G  L     IPSS+ NL  L  L +  +N L 
Sbjct: 31  TDCCNRTWLGVLCDTDTQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLV 90

Query: 129 GRLPQEVGNLKNLLSLFLDNNNLTGPIPSTLYHLNQLSNLYLAYNNLVGPLPKEVGNMKN 188
           G +P  +  L  L  L++ + N++G IP  L  +  L  L  +YN L G LP  + ++ N
Sbjct: 91  GPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPN 150

Query: 189 LDSLLLNRNSLTGPIPSTIGYL-NLGGKLDLSHNRLDSPIPPTIGNLTNLTSLDLSSNQL 247
           L  +  + N ++G IP + G    L   + +S NRL   IPPT  NL NL  +DLS N L
Sbjct: 151 LVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANL-NLAFVDLSRNML 209

Query: 248 SGLLPREVGNLKYLDSLSLDGNNLIGSIPPTIGYLTNLTSLNLGYNQLSSSIPPELMNCS 307
            G      G+ K    + L  N+L   +   +G   NL  L+L  N++  ++P  L    
Sbjct: 210 EGDASVLFGSDKNTQKIHLAKNSLAFDLGK-VGLSKNLNGLDLRNNRIYGTLPQGLTQLK 268

Query: 308 QLQNLVLSHNTLSGIVPPEIGNLTHLRQLDLSHN 341
            L +L +S N L G +P + GNL        ++N
Sbjct: 269 FLHSLNVSFNNLCGEIP-QGGNLQRFDVSAYANN 301

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score =  246 bits (630), Expect = 2e-79
 Identities = 85/278 (30%), Positives = 129/278 (46%), Gaps = 8/278 (2%)

Query: 53  NSLTGTIPAEIGSLRNLVELDLSNNILNGS--IPLEFGNLKDLDALRLRG-NKLDGLIPS 109
            +  G +         +  LDLS   L     IP    NL  L+ L + G N L G IP 
Sbjct: 36  RTWLGVLCDTDTQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPP 95

Query: 110 SIGNLTNLTHLDLSLNQLSGRLPQEVGNLKNLLSLFLDNNNLTGPIPSTLYHLNQLSNLY 169
           +I  LT L +L ++   +SG +P  +  +K L++L    N L+G +P ++  L  L  + 
Sbjct: 96  AIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGIT 155

Query: 170 LAYNNLVGPLPKEVGNMKNLDSLL-LNRNSLTGPIPSTIGYLNLGGKLDLSHNRLDSPIP 228
              N + G +P   G+   L + + ++RN LTG IP T   LNL   +DLS N L+    
Sbjct: 156 FDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLNL-AFVDLSRNMLEGDAS 214

Query: 229 PTIGNLTNLTSLDLSSNQLSGLLPREVGNLKYLDSLSLDGNNLIGSIPPTIGYLTNLTSL 288
              G+  N   + L+ N L+  L  +VG  K L+ L L  N + G++P  +  L  L SL
Sbjct: 215 VLFGSDKNTQKIHLAKNSLAFDLG-KVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSL 273

Query: 289 NLGYNQLSSSIPPELMNCSQLQNLVLSHNT-LSGIVPP 325
           N+ +N L   IP    N  +      ++N  L G   P
Sbjct: 274 NVSFNNLCGEIPQGG-NLQRFDVSAYANNKCLCGSPLP 310

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score =  233 bits (596), Expect = 3e-74
 Identities = 82/261 (31%), Positives = 124/261 (47%), Gaps = 7/261 (2%)

Query: 20  NLESIIIPYTLLSGR--IPSEIGALSKLEELALP-YNSLTGTIPAEIGSLRNLVELDLSN 76
            + ++ +    L     IPS +  L  L  L +   N+L G IP  I  L  L  L +++
Sbjct: 51  RVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITH 110

Query: 77  NILNGSIPLEFGNLKDLDALRLRGNKLDGLIPSSIGNLTNLTHLDLSLNQLSGRLPQEVG 136
             ++G+IP     +K L  L    N L G +P SI +L NL  +    N++SG +P   G
Sbjct: 111 TNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYG 170

Query: 137 NLKNLL-SLFLDNNNLTGPIPSTLYHLNQLSNLYLAYNNLVGPLPKEVGNMKNLDSLLLN 195
           +   L  S+ +  N LTG IP T  +LN L+ + L+ N L G      G+ KN   + L 
Sbjct: 171 SFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSRNMLEGDASVLFGSDKNTQKIHLA 229

Query: 196 RNSLTGPIPSTIGYLNLGGKLDLSHNRLDSPIPPTIGNLTNLTSLDLSSNQLSGLLPREV 255
           +NSL   +       NL   LDL +NR+   +P  +  L  L SL++S N L G +P+  
Sbjct: 230 KNSLAFDLGKVGLSKNL-NGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQG- 287

Query: 256 GNLKYLDSLSLDGNNLIGSIP 276
           GNL+  D  +   N  +   P
Sbjct: 288 GNLQRFDVSAYANNKCLCGSP 308

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score =  227 bits (580), Expect = 7e-72
 Identities = 91/297 (30%), Positives = 140/297 (47%), Gaps = 18/297 (6%)

Query: 86  EFGNLKDLDALRLRGNKLDGLIPSSIGNLTNL----THLDLSLNQLSGRLPQEVGNLKNL 141
           E  N +D  AL      L   I   +GN T L       D       G L         +
Sbjct: 1   ELCNPQDKQAL------LQ--IKKDLGNPTTLSSWLPTTDCCNRTWLGVLCDTDTQTYRV 52

Query: 142 LSLFLDNNNLTG--PIPSTLYHLNQLSNLYLA-YNNLVGPLPKEVGNMKNLDSLLLNRNS 198
            +L L   NL    PIPS+L +L  L+ LY+   NNLVGP+P  +  +  L  L +   +
Sbjct: 53  NNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTN 112

Query: 199 LTGPIPSTIGYLNLGGKLDLSHNRLDSPIPPTIGNLTNLTSLDLSSNQLSGLLPREVGNL 258
           ++G IP  +  +     LD S+N L   +PP+I +L NL  +    N++SG +P   G+ 
Sbjct: 113 VSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSF 172

Query: 259 KYLD-SLSLDGNNLIGSIPPTIGYLTNLTSLNLGYNQLSSSIPPELMNCSQLQNLVLSHN 317
             L  S+++  N L G IPPT   L NL  ++L  N L         +    Q + L+ N
Sbjct: 173 SKLFTSMTISRNRLTGKIPPTFANL-NLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKN 231

Query: 318 TLSGIVPPEIGNLTHLRQLDLSHNFINGTIPSQLGYIPNISAVDLSKNNLSGVVPAS 374
           +L+  +  ++G   +L  LDL +N I GT+P  L  +  + ++++S NNL G +P  
Sbjct: 232 SLAFDLG-KVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQG 287

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score =  151 bits (383), Expect = 1e-42
 Identities = 56/182 (30%), Positives = 84/182 (46%), Gaps = 6/182 (3%)

Query: 214 GKLDLSHNRLDSPIPPTIGNLTNLTSLDLSSNQLSG--LLPREVGNLKYLDSLSL-DGNN 270
              D  +      +  T      + +LDLS   L     +P  + NL YL+ L +   NN
Sbjct: 29  PTTDCCNRTWLGVLCDTDTQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINN 88

Query: 271 LIGSIPPTIGYLTNLTSLNLGYNQLSSSIPPELMNCSQLQNLVLSHNTLSGIVPPEIGNL 330
           L+G IPP I  LT L  L + +  +S +IP  L     L  L  S+N LSG +PP I +L
Sbjct: 89  LVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSL 148

Query: 331 THLRQLDLSHNFINGTIPSQLGYIPNISAV-DLSKNNLSGVVPASVRI--IPKLIVSENN 387
            +L  +    N I+G IP   G    +     +S+N L+G +P +     +  + +S N 
Sbjct: 149 PNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLNLAFVDLSRNM 208

Query: 388 LE 389
           LE
Sbjct: 209 LE 210

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score =  138 bits (351), Expect = 4e-38
 Identities = 61/165 (36%), Positives = 81/165 (49%), Gaps = 6/165 (3%)

Query: 19  PNLESIIIPYTLLSGRIPSEIGALSKL-EELALPYNSLTGTIPAEIGSLRNLVELDLSNN 77
           PNL  I      +SG IP   G+ SKL   + +  N LTG IP    +L NL  +DLS N
Sbjct: 149 PNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANL-NLAFVDLSRN 207

Query: 78  ILNGSIPLEFGNLKDLDALRLRGNKLDGLIPSSIGNLTNLTHLDLSLNQLSGRLPQEVGN 137
           +L G   + FG+ K+   + L  N L   +   +G   NL  LDL  N++ G LPQ +  
Sbjct: 208 MLEGDASVLFGSDKNTQKIHLAKNSLAFDLG-KVGLSKNLNGLDLRNNRIYGTLPQGLTQ 266

Query: 138 LKNLLSLFLDNNNLTGPIPSTLYHLNQLSNLYLAYNNLV--GPLP 180
           LK L SL +  NNL G IP    +L +      A N  +   PLP
Sbjct: 267 LKFLHSLNVSFNNLCGEIPQGG-NLQRFDVSAYANNKCLCGSPLP 310

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score =  222 bits (569), Expect = 8e-67
 Identities = 72/390 (18%), Positives = 136/390 (34%), Gaps = 38/390 (9%)

Query: 18  FPNLESIIIPYTLLSGRIPSEIGALSKLEELALPYNSLTGTIPAEIGSLRNLVELDLSNN 77
               E+    Y         +   L  L ++ +        +P  + +L  +  ++++ N
Sbjct: 224 CEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACN 283

Query: 78  --------ILNGSIPLEFGNLKDLDALRLRGNKLDGL-IPSSIGNLTNLTHLDLSLNQLS 128
                     +     +    + +  + +  N L    + +S+  +  L  L+   NQL 
Sbjct: 284 RGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLKTFPVETSLQKMKKLGMLECLYNQLE 343

Query: 129 GRLPQEVGNLKNLLSLFLDNNNLTGPIPSTLYHLNQLSNLYLAYNNLVG-PLPKEVGNMK 187
           G      G+   L SL L  N +T    +      Q+ NL  A+N L   P   +  ++ 
Sbjct: 344 G-KLPAFGSEIKLASLNLAYNQITEIPANFCGFTEQVENLSFAHNKLKYIPNIFDAKSVS 402

Query: 188 NLDSLLLNRNSLTG-------PIPSTIGYLNLGGKLDLSHNRLDSPIPPTIGNLTNLTSL 240
            + ++  + N +         P+  T         ++LS+N++           + L+S+
Sbjct: 403 VMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSI 462

Query: 241 DLSSNQLSGL-------LPREVGNLKYLDSLSLDGNNLIGSIPPTIGY--LTNLTSLNLG 291
           +L  N L+ +             N   L S+ L  N L   +        L  L  ++L 
Sbjct: 463 NLMGNMLTEIPKNSLKDENENFKNTYLLTSIDLRFNKL-TKLSDDFRATTLPYLVGIDLS 521

Query: 292 YNQLSSSIPPELMNCSQLQ------NLVLSHNTLSGIVPPEIGNLTHLRQLDLSHNFING 345
           YN   S  P + +N S L+            N      P  I     L QL +  N I  
Sbjct: 522 YNSF-SKFPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSNDIR- 579

Query: 346 TIPSQLGYIPNISAVDLSKNNLSGVVPASV 375
            +  ++   PNIS +D+  N    +  + V
Sbjct: 580 KVNEKIT--PNISVLDIKDNPNISIDLSYV 607

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score =  221 bits (564), Expect = 4e-66
 Identities = 68/393 (17%), Positives = 134/393 (34%), Gaps = 32/393 (8%)

Query: 3   NNGNAAELSQLNFTCFPNLESIIIPYTLLSGRIPSEIGALSKLEELALPYNSLTGTIPAE 62
            +     +       F +L    I        I        K  ++    N++T  +   
Sbjct: 143 MHYQKTFVDYDPREDFSDLIKDCINSDPQQKSIKKSSRITLKDTQIGQLSNNITF-VSKA 201

Query: 63  IGSLRNLVELDLSNNILNGSIPLEFGNLKDLDALRLRGNKLDGLIPSSIGNLTNLTHLDL 122
           +  L  L +  + N+        E    ++ +  +               NL +LT +++
Sbjct: 202 VMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKT-----EDLKWDNLKDLTDVEV 256

Query: 123 SLNQLSGRLPQEVGNLKNLLSLFLDNNNLT--------GPIPSTLYHLNQLSNLYLAYNN 174
                  +LP  +  L  +  + +  N               +      ++  +Y+ YNN
Sbjct: 257 YNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNN 316

Query: 175 L-VGPLPKEVGNMKNLDSLLLNRNSLTGPIPSTIGYLNLGGKLDLSHNRLDSPIPPTIGN 233
           L   P+   +  MK L  L    N L G +P+  G       L+L++N++        G 
Sbjct: 317 LKTFPVETSLQKMKKLGMLECLYNQLEGKLPA-FGSEIKLASLNLAYNQITEIPANFCGF 375

Query: 234 LTNLTSLDLSSNQLSGLLPR-EVGNLKYLDSLSLDGNNL-------IGSIPPTIGYLTNL 285
              + +L  + N+L  +    +  ++  + ++    N +          + PT     N+
Sbjct: 376 TEQVENLSFAHNKLKYIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINV 435

Query: 286 TSLNLGYNQLSSSIPPELMNCSQLQNLVLSHNTLSGI-------VPPEIGNLTHLRQLDL 338
           +S+NL  NQ+S          S L ++ L  N L+ I             N   L  +DL
Sbjct: 436 SSINLSNNQISKFPKELFSTGSPLSSINLMGNMLTEIPKNSLKDENENFKNTYLLTSIDL 495

Query: 339 SHNFINGTIPS-QLGYIPNISAVDLSKNNLSGV 370
             N +       +   +P +  +DLS N+ S  
Sbjct: 496 RFNKLTKLSDDFRATTLPYLVGIDLSYNSFSKF 528

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score =  219 bits (561), Expect = 1e-65
 Identities = 64/412 (15%), Positives = 140/412 (33%), Gaps = 44/412 (10%)

Query: 20  NLESIIIPYTLLSGRIPSEIGALSKLEELALPYNSLTG----TIPAEIGSLRNLVELDLS 75
            +  + +     SGR+P  IG L++LE LAL  +          P  I +  +  +    
Sbjct: 82  RVTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQKQKM 141

Query: 76  NNILNGSIP--LEFGNLKDLDALRLRGNKLDGLIPSSIGNLTNLTHLDLSLNQLSGRLPQ 133
                 +        +  DL    +  +     I  S       T +    N ++  + +
Sbjct: 142 RMHYQKTFVDYDPREDFSDLIKDCINSDPQQKSIKKSSRITLKDTQIGQLSNNITF-VSK 200

Query: 134 EVGNLKNLLSLFLDNNNLTGPIPSTLY-------------------HLNQLSNLYLAYNN 174
            V  L  L   ++ N+          +                   +L  L+++ +    
Sbjct: 201 AVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCP 260

Query: 175 LVGPLPKEVGNMKNLDSLLLNRNSLT--------GPIPSTIGYLNLGGKLDLSHNRLDS- 225
            +  LP  +  +  +  + +  N               +          + + +N L + 
Sbjct: 261 NLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLKTF 320

Query: 226 PIPPTIGNLTNLTSLDLSSNQLSGLLPREVGNLKYLDSLSLDGNNLIGSIPPTIGYLTNL 285
           P+  ++  +  L  L+   NQL G LP   G+   L SL+L  N +        G+   +
Sbjct: 321 PVETSLQKMKKLGMLECLYNQLEGKLP-AFGSEIKLASLNLAYNQITEIPANFCGFTEQV 379

Query: 286 TSLNLGYNQLSS-SIPPELMNCSQLQNLVLSHNTLSGIV-------PPEIGNLTHLRQLD 337
            +L+  +N+L       +  + S +  +  S+N +  +         P      ++  ++
Sbjct: 380 ENLSFAHNKLKYIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSIN 439

Query: 338 LSHNFINGTIPSQLGYIPNISAVDLSKNNLSGVVPASVRIIPKLIVSENNLE 389
           LS+N I+            +S+++L  N L+ +   S++   +   +   L 
Sbjct: 440 LSNNQISKFPKELFSTGSPLSSINLMGNMLTEIPKNSLKDENENFKNTYLLT 491

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score =  207 bits (530), Expect = 3e-61
 Identities = 51/368 (13%), Positives = 119/368 (32%), Gaps = 23/368 (6%)

Query: 38  EIGALSKLEELALPYNSLTGTIPAEIGSLRNLVELDLSNNILNG----SIPLEFGNLKDL 93
            + +  ++  L+L     +G +P  IG L  L  L L ++          P         
Sbjct: 76  SLNSNGRVTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSD 135

Query: 94  DALRLRGNKLDGLIPSSIG--NLTNLTHLDLSLNQLSGRLPQEVGNLKNLLSLFLDNNNL 151
           +  +                 + ++L    ++ +     + +          +   +NN+
Sbjct: 136 EQKQKMRMHYQKTFVDYDPREDFSDLIKDCINSDPQQKSIKKSSRITLKDTQIGQLSNNI 195

Query: 152 TGPIPSTLYHLNQLSNLYLAYNNLVGPLPKEVGNMKNLDSLLLNRNSLTGPIPSTIGYLN 211
           T  +   +  L +L   Y+  +  V     E    +N +                   L 
Sbjct: 196 TF-VSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEY-----AQQYKTEDLKWDNLK 249

Query: 212 LGGKLDLSHNRLDSPIPPTIGNLTNLTSLDLSSNQLSGL--------LPREVGNLKYLDS 263
               +++ +    + +P  +  L  +  ++++ N+               +    + +  
Sbjct: 250 DLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQI 309

Query: 264 LSLDGNNLI-GSIPPTIGYLTNLTSLNLGYNQLSSSIPPELMNCSQLQNLVLSHNTLSGI 322
           + +  NNL    +  ++  +  L  L   YNQL     P   +  +L +L L++N ++ I
Sbjct: 310 IYIGYNNLKTFPVETSLQKMKKLGMLECLYNQL-EGKLPAFGSEIKLASLNLAYNQITEI 368

Query: 323 VPPEIGNLTHLRQLDLSHNFINGTIPS-QLGYIPNISAVDLSKNNLSGVVPASVRIIPKL 381
                G    +  L  +HN +           +  +SA+D S N +  V   +   +   
Sbjct: 369 PANFCGFTEQVENLSFAHNKLKYIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPT 428

Query: 382 IVSENNLE 389
                N+ 
Sbjct: 429 PFKGINVS 436

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score =  199 bits (509), Expect = 3e-58
 Identities = 62/343 (18%), Positives = 121/343 (35%), Gaps = 32/343 (9%)

Query: 26  IPYTLLSGRIPSEIGALSKLEELALPYNSL-TGTIPAEIGSLRNLVELDLSNNILNGSIP 84
                   +  ++     K++ + + YN+L T  +   +  ++ L  L+   N L G +P
Sbjct: 288 GEQLKDDWQALADAPVGEKIQIIYIGYNNLKTFPVETSLQKMKKLGMLECLYNQLEGKLP 347

Query: 85  LEFGNLKDLDALRLRGNKLDGLIPSSIGNLTNLTHLDLSLNQLSGRLPQ--EVGNLKNLL 142
             FG+   L +L L  N++  +  +  G    + +L  + N+L   +P   +  ++  + 
Sbjct: 348 -AFGSEIKLASLNLAYNQITEIPANFCGFTEQVENLSFAHNKLKY-IPNIFDAKSVSVMS 405

Query: 143 SLFLDNNNLTG-------PIPSTLYHLNQLSNLYLAYNNLVGPLPKEVGNMKNLDSLLLN 195
           ++    N +         P+  T +    +S++ L+ N +     +       L S+ L 
Sbjct: 406 AIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLM 465

Query: 196 RNSLTG-------PIPSTIGYLNLGGKLDLSHNRLDSPIPPTI--GNLTNLTSLDLSSNQ 246
            N LT                  L   +DL  N+L   +        L  L  +DLS N 
Sbjct: 466 GNMLTEIPKNSLKDENENFKNTYLLTSIDLRFNKLTK-LSDDFRATTLPYLVGIDLSYNS 524

Query: 247 LSGLLPREVGNLKYLDSLSL------DGNNLIGSIPPTIGYLTNLTSLNLGYNQLSSSIP 300
            S   P +  N   L    +       GN  +   P  I    +LT L +G N +   + 
Sbjct: 525 FSKF-PTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSNDIRK-VN 582

Query: 301 PELMNCSQLQNLVLSHNTLSGIVPPEIGNLTHLRQLDLSHNFI 343
            ++     +  L +  N    I    +          L ++  
Sbjct: 583 EKIT--PNISVLDIKDNPNISIDLSYVCPYIEAGMYMLFYDKT 623

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score =  146 bits (371), Expect = 7e-39
 Identities = 43/299 (14%), Positives = 89/299 (29%), Gaps = 40/299 (13%)

Query: 105 GLIPSSIGNLTNLTHLDLSLNQLSGRLPQEVGNLKNLLSLFLDNNNLTGPIPSTLYHLNQ 164
                S+ +   +T L L     SGR+P  +G L  L  L L ++               
Sbjct: 71  AQPGVSLNSNGRVTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNERLFG----- 125

Query: 165 LSNLYLAYNNLVGPLPKEVGNMKNLDSLLLNRNSLTGPIPSTIGYLNLG--GKLDLSHNR 222
                          PK +    + +     R              +     K  ++ + 
Sbjct: 126 ---------------PKGISANMSDEQKQKMRMHYQKTFVDYDPREDFSDLIKDCINSDP 170

Query: 223 LDSPIPPTIGNLTNLTSLDLSSNQLSGLLPREVGNLKYLDSLSLDGNNLIGSIPPTIGYL 282
               I  +       T +   SN ++ +  + V  L  L    +  +  +          
Sbjct: 171 QQKSIKKSSRITLKDTQIGQLSNNITFV-SKAVMRLTKLRQFYMGNSPFVAENICEAWEN 229

Query: 283 TNLTSLNLGYNQLSSSIPPELMNCSQLQNLVLSHNTLSGIVPPEIGNLTHLRQLDLSHNF 342
            N       Y Q   +   +  N   L ++ + +      +P  +  L  ++ ++++ N 
Sbjct: 230 ENSE-----YAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNR 284

Query: 343 I--------NGTIPSQLGYIPNISAVDLSKNNL-SGVVPASVRIIPKLIV---SENNLE 389
                    +    +       I  + +  NNL +  V  S++ + KL +     N LE
Sbjct: 285 GISGEQLKDDWQALADAPVGEKIQIIYIGYNNLKTFPVETSLQKMKKLGMLECLYNQLE 343

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  221 bits (565), Expect = 7e-66
 Identities = 92/402 (22%), Positives = 151/402 (37%), Gaps = 23/402 (5%)

Query: 10  LSQLNFTCFPNLESIIIPYTLLSGRIPSEIGALSKLEELALPYNSLTGTIPAEIGSLRNL 69
           L+Q+      N+  + + +  L     +     S+L  L + +N+++   P     L  L
Sbjct: 16  LTQVPDDLPTNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPML 75

Query: 70  VELDLSNNILNGSIPLEFGNLKDLDALRLRGNKLDGLIPSSIGNLTNLTHLDLSLNQLSG 129
             L+L +N L+      F    +L  L L  N +  +  +      NL  LDLS N LS 
Sbjct: 76  KVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSS 135

Query: 130 RLPQEVGNLKNLLSLFLDNNNLTGPIPSTLYHLN--QLSNLYLAYNNLVGPLPKEVGNMK 187
                   L+NL  L L NN +       L       L  L L+ N +    P     + 
Sbjct: 136 TKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIKEFSPGCFHAIG 195

Query: 188 NLDSLLLNRNSLTGPIPSTIGYLNLGGK---LDLSHNRLDSPIPPTIGNL--TNLTSLDL 242
            L  L LN   L   +   +           L LS+++L +    T   L  TNLT LDL
Sbjct: 196 RLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDL 255

Query: 243 SSNQLSGLLPREVGNLKYLDSLSLDGNNLIGSIPPTIGYLTNLTSLNLGYN--------- 293
           S N L+ +       L  L+   L+ NN+      ++  L N+  LNL  +         
Sbjct: 256 SYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLA 315

Query: 294 QLSSSIPPELMNCSQLQNLVLSHNTLSGIVPPEIGNLTHLRQLDLSHNFINGTIPSQLG- 352
            L             L++L +  N + GI       L +L+ L LS++F +    +    
Sbjct: 316 SLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETF 375

Query: 353 ---YIPNISAVDLSKNNLSGVVPASVRIIPKLIV---SENNL 388
                  +  ++L+KN +S +   +   +  L V     N +
Sbjct: 376 VSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEI 417

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  214 bits (546), Expect = 4e-63
 Identities = 80/371 (21%), Positives = 141/371 (38%), Gaps = 22/371 (5%)

Query: 45  LEELALPYNSLTGTIPAEIGSLRNLVELDLSNNILNGSIPLEFGNLKDLDALRLRGNKLD 104
            E     +  LT  +P ++    N+  L+L++N L       F     L +L +  N + 
Sbjct: 6   HEVADCSHLKLT-QVPDDL--PTNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTIS 62

Query: 105 GLIPSSIGNLTNLTHLDLSLNQLSGRLPQEVGNLKNLLSLFLDNNNLTGPIPSTLYHLNQ 164
            L P     L  L  L+L  N+LS    +      NL  L L +N++     +       
Sbjct: 63  KLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKN 122

Query: 165 LSNLYLAYNNLVGPLPKEVGNMKNLDSLLLNRNSLTGPIPSTIGYLNLGG--KLDLSHNR 222
           L  L L++N L          ++NL  LLL+ N +       +         KL+LS N+
Sbjct: 123 LITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQ 182

Query: 223 LDSPIPPTIGNLTNLTSLDLSSNQLSGLLPREVG---NLKYLDSLSLDGNNLIGSIPPTI 279
           +    P     +  L  L L++ QL   L  ++        + +LSL  + L  +   T 
Sbjct: 183 IKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTF 242

Query: 280 GYL--TNLTSLNLGYNQLSSSIPPELMNCSQLQNLVLSHNTLSGIVPPEIGNLTHLRQLD 337
             L  TNLT L+L YN L+           QL+   L +N +  +    +  L ++R L+
Sbjct: 243 LGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLN 302

Query: 338 LSHNF---------INGTIPSQLGYIPNISAVDLSKNNLSGVVPASVRIIPKLIV---SE 385
           L  +F         +         ++  +  +++  N++ G+       +  L     S 
Sbjct: 303 LKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSN 362

Query: 386 NNLELENSTSS 396
           +   L   T+ 
Sbjct: 363 SFTSLRTLTNE 373

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  206 bits (526), Expect = 2e-60
 Identities = 82/401 (20%), Positives = 137/401 (34%), Gaps = 30/401 (7%)

Query: 19  PNLESIIIPYTLLSGRIPSEIGAL--SKLEELALPYNSLTGTIPAEIGSLRNLVELDLSN 76
            ++ ++ +  + LS    +    L  + L  L L YN+L          L  L    L  
Sbjct: 222 TSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEY 281

Query: 77  NILNGSIPLEFGNLKDLDALRLRGN---------KLDGLIPSSIGNLTNLTHLDLSLNQL 127
           N +          L ++  L L+ +          L  +   S   L  L HL++  N +
Sbjct: 282 NNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDI 341

Query: 128 SGRLPQEVGNLKNLLSLFLDNN--NLTGPIPSTLYHL--NQLSNLYLAYNNLVGPLPKEV 183
            G        L NL  L L N+  +L      T   L  + L  L L  N +        
Sbjct: 342 PGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAF 401

Query: 184 GNMKNLDSLLLNRNSLTGPIP-STIGYLNLGGKLDLSHNRLDSPIPPTIGNLTNLTSLDL 242
             + +L+ L L  N +   +       L    ++ LS+N+       +   + +L  L L
Sbjct: 402 SWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLML 461

Query: 243 SSNQLSGL--LPREVGNLKYLDSLSLDGNNLIGSIPPTIGYLTNLTSLNLGYNQLSS--- 297
               L  +   P     L+ L  L L  NN+       +  L  L  L+L +N L+    
Sbjct: 462 RRVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWK 521

Query: 298 -----SIPPELMNCSQLQNLVLSHNTLSGIVPPEIGNLTHLRQLDLSHNFINGTIPSQLG 352
                     L   S L  L L  N    I      +L  L+ +DL  N +N    S   
Sbjct: 522 HANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPASVFN 581

Query: 353 YIPNISAVDLSKNNLSGVVPASVRIIPK----LIVSENNLE 389
              ++ +++L KN ++ V         +    L +  N  +
Sbjct: 582 NQVSLKSLNLQKNLITSVEKKVFGPAFRNLTELDMRFNPFD 622

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  183 bits (467), Expect = 6e-52
 Identities = 79/362 (21%), Positives = 131/362 (36%), Gaps = 25/362 (6%)

Query: 15  FTCFPNLESIIIPYTLLSGRIPSEIGALSKLEELALPYN---------SLTGTIPAEIGS 65
           F   P LE   + Y  +       +  L  +  L L  +         SL          
Sbjct: 268 FAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQW 327

Query: 66  LRNLVELDLSNNILNGSIPLEFGNLKDLDALRLRGNKLDGLIPSSIG----NLTNLTHLD 121
           L+ L  L++ +N + G     F  L +L  L L  +       ++        + L  L+
Sbjct: 328 LKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILN 387

Query: 122 LSLNQLSGRLPQEVGNLKNLLSLFLDNNNLTGPIP-STLYHLNQLSNLYLAYNNLVGPLP 180
           L+ N++S         L +L  L L  N +   +       L  +  +YL+YN  +    
Sbjct: 388 LTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTR 447

Query: 181 KEVGNMKNLDSLLLNRNSLTG--PIPSTIGYLNLGGKLDLSHNRLDSPIPPTIGNLTNLT 238
                + +L  L+L R +L      PS    L     LDLS+N + +     +  L  L 
Sbjct: 448 NSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLEGLEKLE 507

Query: 239 SLDLSSNQLS--------GLLPREVGNLKYLDSLSLDGNNLIGSIPPTIGYLTNLTSLNL 290
            LDL  N L+        G     +  L +L  L+L+ N            L  L  ++L
Sbjct: 508 ILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKIIDL 567

Query: 291 GYNQLSSSIPPELMNCSQLQNLVLSHNTLSGIVPPEIG-NLTHLRQLDLSHNFINGTIPS 349
           G N L++       N   L++L L  N ++ +     G    +L +LD+  N  + T  S
Sbjct: 568 GLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEKKVFGPAFRNLTELDMRFNPFDCTCES 627

Query: 350 QL 351
             
Sbjct: 628 IA 629

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  159 bits (403), Expect = 5e-43
 Identities = 66/284 (23%), Positives = 114/284 (40%), Gaps = 13/284 (4%)

Query: 115 TNLTHLDLSLNQLSGRLPQEVGNLKNLLSLFLDNNNLTGPIPSTLYHLNQLSNLYLAYNN 174
            +    D S  +L+ ++P ++    N+  L L +N L     +     +QL++L + +N 
Sbjct: 4   VSHEVADCSHLKLT-QVPDDL--PTNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNT 60

Query: 175 LVGPLPKEVGNMKNLDSLLLNRNSLTGPIPSTIGYLNLGGKLDLSHNRLDSPIPPTIGNL 234
           +    P+    +  L  L L  N L+     T  +     +L L  N +           
Sbjct: 61  ISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQ 120

Query: 235 TNLTSLDLSSNQLSGLLPREVGNLKYLDSLSLDGNNLIGSIPPTIGYL--TNLTSLNLGY 292
            NL +LDLS N LS         L+ L  L L  N +       +     ++L  L L  
Sbjct: 121 KNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSS 180

Query: 293 NQLSSSIPPELMNCSQLQNLVLSHNTLSGIVPPEIG---NLTHLRQLDLSHNFINGTIPS 349
           NQ+    P       +L  L L++  L   +  ++      T +R L LS++ ++ T  +
Sbjct: 181 NQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNT 240

Query: 350 QLG--YIPNISAVDLSKNNLSGVVPASVRIIPKLIV---SENNL 388
                   N++ +DLS NNL+ V   S   +P+L       NN+
Sbjct: 241 TFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNI 284

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  148 bits (376), Expect = 2e-39
 Identities = 63/271 (23%), Positives = 100/271 (36%), Gaps = 12/271 (4%)

Query: 41  ALSKLEELALPYNSLTGTIPAEIGSLRNLVELDLSNNILNGSIP-LEFGNLKDLDALRLR 99
           A S L  L L  N ++         L +L  LDL  N +   +   E+  L+++  + L 
Sbjct: 379 AHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLS 438

Query: 100 GNKLDGLIPSSIGNLTNLTHLDLSLNQLSG--RLPQEVGNLKNLLSLFLDNNNLTGPIPS 157
            NK   L  +S   + +L  L L    L      P     L+NL  L L NNN+      
Sbjct: 439 YNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDD 498

Query: 158 TLYHLNQLSNLYLAYNNL--------VGPLPKEVGNMKNLDSLLLNRNSLTGPIPSTIGY 209
            L  L +L  L L +NNL         G     +  + +L  L L  N            
Sbjct: 499 MLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKD 558

Query: 210 LNLGGKLDLSHNRLDSPIPPTIGNLTNLTSLDLSSNQLSGLLPREVG-NLKYLDSLSLDG 268
           L     +DL  N L++       N  +L SL+L  N ++ +  +  G   + L  L +  
Sbjct: 559 LFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEKKVFGPAFRNLTELDMRF 618

Query: 269 NNLIGSIPPTIGYLTNLTSLNLGYNQLSSSI 299
           N    +      ++  +   +    +LSS  
Sbjct: 619 NPFDCTCESIAWFVNWINETHTNIPELSSHY 649

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  137 bits (346), Expect = 2e-35
 Identities = 63/277 (22%), Positives = 91/277 (32%), Gaps = 12/277 (4%)

Query: 11  SQLNFTCFPNLESIIIPYTLLSGRIPSEIGALSKLEELALPYNSLTGTIPA-EIGSLRNL 69
                     L  + +    +S         L  LE L L  N +   +   E   L N+
Sbjct: 373 ETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENI 432

Query: 70  VELDLSNNILNGSIPLEFGNLKDLDALRLRGNKLDGL--IPSSIGNLTNLTHLDLSLNQL 127
            E+ LS N         F  +  L  L LR   L  +   PS    L NLT LDLS N +
Sbjct: 433 FEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNI 492

Query: 128 SGRLPQEVGNLKNLLSLFLDNNNLT--------GPIPSTLYHLNQLSNLYLAYNNLVGPL 179
           +      +  L+ L  L L +NNL         G     L  L+ L  L L  N      
Sbjct: 493 ANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIP 552

Query: 180 PKEVGNMKNLDSLLLNRNSLTGPIPSTIGYLNLGGKLDLSHNRLDSPIPPTIG-NLTNLT 238
            +   ++  L  + L  N+L     S          L+L  N + S      G    NLT
Sbjct: 553 VEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEKKVFGPAFRNLT 612

Query: 239 SLDLSSNQLSGLLPREVGNLKYLDSLSLDGNNLIGSI 275
            LD+  N            + +++    +   L    
Sbjct: 613 ELDMRFNPFDCTCESIAWFVNWINETHTNIPELSSHY 649

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  110 bits (278), Expect = 2e-26
 Identities = 53/234 (22%), Positives = 86/234 (36%), Gaps = 14/234 (5%)

Query: 1   MDNNGNAAELSQLNFTCFPNLESIIIPYTLLSGRIPSEIGALSKLEELALPYNSLTG--T 58
           +  N    EL+   +    N+  I + Y        +    +  L+ L L   +L    +
Sbjct: 412 LGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDS 471

Query: 59  IPAEIGSLRNLVELDLSNNILNGSIPLEFGNLKDLDALRLRGNKL--------DGLIPSS 110
            P+    LRNL  LDLSNN +          L+ L+ L L+ N L         G     
Sbjct: 472 SPSPFQPLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYF 531

Query: 111 IGNLTNLTHLDLSLNQLSGRLPQEVGNLKNLLSLFLDNNNLTGPIPSTLYHLNQLSNLYL 170
           +  L++L  L+L  N       +   +L  L  + L  NNL     S   +   L +L L
Sbjct: 532 LKGLSHLHILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNL 591

Query: 171 AYNNLVGPLPKEVG-NMKNLDSLLLNRNSLTGPIPSTIGYLNLGGKLDLSHNRL 223
             N +     K  G   +NL  L +  N       S   ++N    ++ +H  +
Sbjct: 592 QKNLITSVEKKVFGPAFRNLTELDMRFNPFDCTCESIAWFVNW---INETHTNI 642

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 97.8 bits (244), Expect = 4e-22
 Identities = 39/158 (24%), Positives = 61/158 (38%), Gaps = 6/158 (3%)

Query: 235 TNLTSLDLSSNQLSGLLPREVGNLKYLDSLSLDGNNLIGSIPPTIGYLTNLTSLNLGYNQ 294
            +    D S  +L+ +      N+  L+   L  N L           + LTSL++G+N 
Sbjct: 4   VSHEVADCSHLKLTQVPDDLPTNITVLN---LTHNQLRRLPAANFTRYSQLTSLDVGFNT 60

Query: 295 LSSSIPPELMNCSQLQNLVLSHNTLSGIVPPEIGNLTHLRQLDLSHNFINGTIPSQLGYI 354
           +S   P        L+ L L HN LS +        T+L +L L  N I     +     
Sbjct: 61  ISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQ 120

Query: 355 PNISAVDLSKNNLSGVVPASVRIIPKLIV---SENNLE 389
            N+  +DLS N LS     +   +  L     S N ++
Sbjct: 121 KNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQ 158

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score =  214 bits (547), Expect = 2e-62
 Identities = 68/387 (17%), Positives = 132/387 (34%), Gaps = 38/387 (9%)

Query: 20  NLESIIIPYTLLSGRIPSEIGALSKLEELALPYNSLTGTIPAEIGSLRNLVELDLSNNIL 79
           + E     Y             L  L ++ L        +P  +  L  L  L+++ N  
Sbjct: 468 DWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRG 527

Query: 80  NG---------SIPLEFGNLKDLDALRLRGNKLDGLIPS-SIGNLTNLTHLDLSLNQLSG 129
                       +  +      +    +  N L+    S S+  +  L  LD   N++  
Sbjct: 528 ISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLEEFPASASLQKMVKLGLLDCVHNKVRH 587

Query: 130 RLPQEVGNLKNLLSLFLDNNNLTGPIPSTLYHLNQLSNLYLAYNNLVG-PLPKEVGNMKN 188
              +  G    L  L LD N +           +Q+  L  ++N L   P      ++  
Sbjct: 588 --LEAFGTNVKLTDLKLDYNQIEEIPEDFCAFTDQVEGLGFSHNKLKYIPNIFNAKSVYV 645

Query: 189 LDSLLLNRNSLTGPIPSTIGYLNLGG-----KLDLSHNRLDSPIPPTIGNLTNLTSLDLS 243
           + S+  + N +     +    ++         + LS+N +           + ++++ LS
Sbjct: 646 MGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQKFPTELFATGSPISTIILS 705

Query: 244 SNQLSGL-------LPREVGNLKYLDSLSLDGNNLIGSIPPTI--GYLTNLTSLNLGYNQ 294
           +N ++ +             N   L ++ L  N L  S+        L  L+++++ YN 
Sbjct: 706 NNLMTSIPENSLKPKDGNYKNTYLLTTIDLRFNKL-TSLSDDFRATTLPYLSNMDVSYNC 764

Query: 295 LSSSIPPELMNCSQLQ------NLVLSHNTLSGIVPPEIGNLTHLRQLDLSHNFINGTIP 348
            SS  P + +N SQL+            N +    P  I     L QL +  N I   + 
Sbjct: 765 FSS-FPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGSNDIR-KVD 822

Query: 349 SQLGYIPNISAVDLSKNNLSGVVPASV 375
            +L   P +  +D++ N    +   SV
Sbjct: 823 EKL--TPQLYILDIADNPNISIDVTSV 847

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score =  192 bits (489), Expect = 2e-54
 Identities = 63/397 (15%), Positives = 130/397 (32%), Gaps = 38/397 (9%)

Query: 3   NNGNAAELSQLNFTCFPNLESIIIPYTLLSGRIPSEIGALSKLEELALPYNSLTG----- 57
           +     E  +L+++   +L  + +       ++P  +  L +L+ L +  N         
Sbjct: 475 DYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLK 534

Query: 58  ----TIPAEIGSLRNLVELDLSNNILNG-SIPLEFGNLKDLDALRLRGNKLDGLIPSSIG 112
                +  +  +   +    +  N L           +  L  L    NK+  L   + G
Sbjct: 535 ADWTRLADDEDTGPKIQIFYMGYNNLEEFPASASLQKMVKLGLLDCVHNKVRHL--EAFG 592

Query: 113 NLTNLTHLDLSLNQLSGRLPQEVG-NLKNLLSLFLDNNNLTG-PIPSTLYHLNQLSNLYL 170
               LT L L  NQ+   +P++       +  L   +N L   P       +  + ++  
Sbjct: 593 TNVKLTDLKLDYNQIEE-IPEDFCAFTDQVEGLGFSHNKLKYIPNIFNAKSVYVMGSVDF 651

Query: 171 AYNNLVG-----PLPKEVGNMKNLDSLLLNRNSLTGPIPSTIGYLNLGGKLDLSHNRLDS 225
           +YN +           +     N  ++ L+ N +           +    + LS+N + S
Sbjct: 652 SYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQKFPTELFATGSPISTIILSNNLMTS 711

Query: 226 -------PIPPTIGNLTNLTSLDLSSNQLSGLLPR-EVGNLKYLDSLSLDGNNLIGSIPP 277
                  P      N   LT++DL  N+L+ L        L YL ++ +  N    S P 
Sbjct: 712 IPENSLKPKDGNYKNTYLLTTIDLRFNKLTSLSDDFRATTLPYLSNMDVSYNCF-SSFPT 770

Query: 278 TIGYLTNLTSLNLGY------NQLSSSIPPELMNCSQLQNLVLSHNTLSGIVPPEIGNLT 331
                + L +  + +      N++    P  +  C  L  L +  N +  +   ++    
Sbjct: 771 QPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGSNDIRKV-DEKL--TP 827

Query: 332 HLRQLDLSHNFINGTIPSQLGYIPNISAVDLSKNNLS 368
            L  LD++ N       + +          L  +   
Sbjct: 828 QLYILDIADNPNISIDVTSVCPYIEAGMYVLLYDKTQ 864

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score =  184 bits (469), Expect = 1e-51
 Identities = 77/438 (17%), Positives = 141/438 (32%), Gaps = 85/438 (19%)

Query: 31  LSGRIPSEIGALSKLEELALPYNSLTGTI-------------------------PAEIGS 65
             GR+P  IG L++L+ L+   +S T +                             +  
Sbjct: 335 AKGRVPDAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLDY 394

Query: 66  LRNLVELDLSNNILNGSIPLEFGNLKDLDALRLRGNKLDGL------IPSSIGNLTNLTH 119
            + L   DL  + +N +   E   +K    + L+  ++  L      I  +I  LT L  
Sbjct: 395 DQRLNLSDLLQDAINRN--PEMKPIKKDSRISLKDTQIGNLTNRITFISKAIQRLTKLQI 452

Query: 120 LDLSLNQLSG-------------------RLPQEVGNLKNLLSLFLDNNNLTGPIPSTLY 160
           +  + +  +                           NLK+L  + L N      +P  LY
Sbjct: 453 IYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLY 512

Query: 161 HLNQLSNLYLAYNNLVGP---------LPKEVGNMKNLDSLLLNRNSLTG-PIPSTIGYL 210
            L +L +L +A N  +           L  +      +    +  N+L   P  +++  +
Sbjct: 513 DLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLEEFPASASLQKM 572

Query: 211 NLGGKLDLSHNRLDSPIPPTIGNLTNLTSLDLSSNQLSGLLPREVGNLKYLDSLSLDGNN 270
              G LD  HN++        G    LT L L  NQ+  +          ++ L    N 
Sbjct: 573 VKLGLLDCVHNKVRHL--EAFGTNVKLTDLKLDYNQIEEIPEDFCAFTDQVEGLGFSHNK 630

Query: 271 LIGSIPPT--IGYLTNLTSLNLGYNQLSS-----SIPPELMNCSQLQNLVLSHNTLSGIV 323
           L   IP       +  + S++  YN++ S     S   +         + LS+N +    
Sbjct: 631 L-KYIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQKFP 689

Query: 324 PPEIGNLTHLRQLDLSHNFI-------NGTIPSQLGYIPNISAVDLSKNNLSGVVPASVR 376
                  + +  + LS+N +                    ++ +DL  N L+  +    R
Sbjct: 690 TELFATGSPISTIILSNNLMTSIPENSLKPKDGNYKNTYLLTTIDLRFNKLTS-LSDDFR 748

Query: 377 IIP-----KLIVSENNLE 389
                    + VS N   
Sbjct: 749 ATTLPYLSNMDVSYNCFS 766

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score =  141 bits (358), Expect = 6e-37
 Identities = 50/311 (16%), Positives = 97/311 (31%), Gaps = 52/311 (16%)

Query: 34  RIPSEIGALSKLEELALPYNSLTGTIPAEIGS-LRNLVELDLSNNILNGSIP--LEFGNL 90
           R     G   KL +L L YN +   IP +  +    +  L  S+N L   IP      ++
Sbjct: 586 RHLEAFGTNVKLTDLKLDYNQIE-EIPEDFCAFTDQVEGLGFSHNKLK-YIPNIFNAKSV 643

Query: 91  KDLDALRLRGNKLDGLIPS-----SIGNLTNLTHLDLSLNQLSGRLPQEVGNLKNLLSLF 145
             + ++    NK+     +           N + + LS N++     +       + ++ 
Sbjct: 644 YVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQKFPTELFATGSPISTII 703

Query: 146 LDNNNLT-------GPIPSTLYHLNQLSNLYLAYNNLVG-PLPKEVGNMKNLDSLLLNRN 197
           L NN +T        P      +   L+ + L +N L           +  L ++ ++ N
Sbjct: 704 LSNNLMTSIPENSLKPKDGNYKNTYLLTTIDLRFNKLTSLSDDFRATTLPYLSNMDVSYN 763

Query: 198 SLTGPIPSTIG------YLNLGGKLDLSHNRLDSPIPPTIGNLTNLTSLDLSSNQLSGLL 251
             +   P+            +  + D   NR+    P  I    +L  L + SN +    
Sbjct: 764 CFSS-FPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGSNDIR--- 819

Query: 252 PREVGNLKYLDSLSLDGNNLIGSIPPTIGYLTNLTSLNLGYNQLSSSIPPELMNCSQLQN 311
                                  +   +     L  L++  N   S     +    +   
Sbjct: 820 ----------------------KVDEKL--TPQLYILDIADNPNISIDVTSVCPYIEAGM 855

Query: 312 LVLSHNTLSGI 322
            VL ++    I
Sbjct: 856 YVLLYDKTQDI 866

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score =  131 bits (332), Expect = 2e-33
 Identities = 38/317 (11%), Positives = 89/317 (28%), Gaps = 22/317 (6%)

Query: 71  ELDLSNNILNGSIPLEFGNLKDLDALRLRGNKLDGLIPSSIGNLTNLTHLDLSLNQLSGR 130
            + +        I          +AL  +  +      ++  +  N    +  L+    +
Sbjct: 256 NVPIQLKETAEYIKDYKALKAIWEALDGKNWRYYSGTINNTIHSLNWN-FNKELDMWGDQ 314

Query: 131 LPQEVGNLKNLLSLFLDNNNLTGPIPSTLYHLNQLSNLYLAYNNLVGPLPKEVGNMKNLD 190
              ++ N   +  L L      G +P  +  L +L  L    ++               D
Sbjct: 315 PGVDLDNNGRVTGLSLAGFGAKGRVPDAIGQLTELKVLSFGTHSETVSGRLFGDEELTPD 374

Query: 191 SLLLNRNSLTGPIPS-TIGYLNLGGKLDLSHNRLDS-----PIPPTIGNLTNLTSLDLSS 244
                ++ +        + Y       DL  + ++      PI          T +   +
Sbjct: 375 MSEERKHRIRMHYKKMFLDYDQRLNLSDLLQDAINRNPEMKPIKKDSRISLKDTQIGNLT 434

Query: 245 NQLSGLLPREVGNLKYLDSLSLDGNNLIGSIPPTIGYLTNLTSLNLGYNQLSSSIPPELM 304
           N+++ +  + +  L  L  +    +              +    N  Y +   +      
Sbjct: 435 NRITFI-SKAIQRLTKLQIIYFANSPFTYDNIAV-----DWEDANSDYAKQYENEELSWS 488

Query: 305 NCSQLQNLVLSHNTLSGIVPPEIGNLTHLRQLDLSHNFING---------TIPSQLGYIP 355
           N   L ++ L +      +P  + +L  L+ L+++ N              +       P
Sbjct: 489 NLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGP 548

Query: 356 NISAVDLSKNNLSGVVP 372
            I    +  NNL     
Sbjct: 549 KIQIFYMGYNNLEEFPA 565

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 57.6 bits (139), Expect = 4e-09
 Identities = 22/169 (13%), Positives = 49/169 (28%), Gaps = 1/169 (0%)

Query: 234 LTNLTSLDLSSNQLSGLLPREVGNLKYLDSLSLDGNNLIGSIPPTIGYLTNLTSLNLGYN 293
           LT   ++ +   + +  +          ++L                +  N  + N   +
Sbjct: 251 LTKDANVPIQLKETAEYIKDYKALKAIWEALDGKNWRYYSGTINNTIHSLN-WNFNKELD 309

Query: 294 QLSSSIPPELMNCSQLQNLVLSHNTLSGIVPPEIGNLTHLRQLDLSHNFINGTIPSQLGY 353
                   +L N  ++  L L+     G VP  IG LT L+ L    +    +       
Sbjct: 310 MWGDQPGVDLDNNGRVTGLSLAGFGAKGRVPDAIGQLTELKVLSFGTHSETVSGRLFGDE 369

Query: 354 IPNISAVDLSKNNLSGVVPASVRIIPKLIVSENNLELENSTSSENAPPP 402
                  +  K+ +            + +   + L+   + + E  P  
Sbjct: 370 ELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSDLLQDAINRNPEMKPIK 418

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score =  191 bits (488), Expect = 2e-55
 Identities = 72/375 (19%), Positives = 130/375 (34%), Gaps = 9/375 (2%)

Query: 9   ELSQLNFTCFPNLESIIIPYTLLSGRIPSEIGALSKLEELALPYNSLTGTIPAEIGSLRN 68
            +    F+   NL  + +    +         +  +L+ L L  N L       +   + 
Sbjct: 47  TIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIFMAETALSGPKA 106

Query: 69  LVELDLSNNILNGSIPLEFGNLKDLDALRLRGNKLDGLIPSSIGNLTNLTHLDLSLNQLS 128
           L  L      ++    +   N K L++L L  N +  +          L  LD   N + 
Sbjct: 107 LKHLFFIQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIH 166

Query: 129 GRLPQEVGNLKNLLSLFLD-NNNLTGPIPSTLYHLNQLSNLYLAYNNLVGPLPKEVGN-- 185
               +++ +L+   +L L+ N N    I    +      +L       +  + K + N  
Sbjct: 167 YLSKEDMSSLQQATNLSLNLNGNDIAGIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNST 226

Query: 186 MKNLDSLLLNRNSLTGPIPSTIGYLNL--GGKLDLSHNRLDSPIPPTIGNLTNLTSLDLS 243
           +++L              P+    L       ++L  +   +    T    + L  LDL+
Sbjct: 227 IQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFFNISSNTFHCFSGLQELDLT 286

Query: 244 SNQLSGLLPREVGNLKYLDSLSLDGNNLIGSIPPTIGYLTNLTSLNLGYNQLSSSIPPE- 302
           +  LS L P  +  L  L  L L  N        +     +LT L++  N     +    
Sbjct: 287 ATHLSEL-PSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGC 345

Query: 303 LMNCSQLQNLVLSHN--TLSGIVPPEIGNLTHLRQLDLSHNFINGTIPSQLGYIPNISAV 360
           L N   L+ L LSH+    S     ++ NL+HL+ L+LS+N             P +  +
Sbjct: 346 LENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELL 405

Query: 361 DLSKNNLSGVVPASV 375
           DL+   L      S 
Sbjct: 406 DLAFTRLKVKDAQSP 420

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score =  190 bits (485), Expect = 6e-55
 Identities = 73/391 (18%), Positives = 131/391 (33%), Gaps = 12/391 (3%)

Query: 10  LSQLNFTCFPNLESIIIPYTLLSGRIPSEIGALSKLEELALPYNSLTGTIPAEIGSLRNL 69
           L+++  T   + E +   + +L     +    L  L  L L    +         S   L
Sbjct: 24  LNEIPGTLPNSTECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRL 83

Query: 70  VELDLSNNILNGSIPLEFGNLKDLDALRLRGNKLDGLIPSSIGNLTNLTHLDLSLNQLSG 129
             L L+ N L           K L  L      +  +    + N   L  L L  N +S 
Sbjct: 84  DTLVLTANPLIFMAETALSGPKALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSNHISS 143

Query: 130 RLPQEVGNLKNLLSLFLDNNNLTGPIPSTLYHLNQLSNLYLAYN-NLVGPLPKEVGNMKN 188
               +    + L  L   NN +       +  L Q +NL L  N N +  +     +   
Sbjct: 144 IKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGNDIAGIEPGAFDSAV 203

Query: 189 LDSLLLNRNSLTGPIPSTIGYLNLG--GKLDLSHNRLDSPIPPTIGNL--TNLTSLDLSS 244
             SL          I   +    +             +   P     L   ++ S++L  
Sbjct: 204 FQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQK 263

Query: 245 NQLSGLLPREVGNLKYLDSLSLDGNNLIGSIPPTIGYLTNLTSLNLGYNQLSSSIPPELM 304
           +    +          L  L L   + +  +P  +  L+ L  L L  N+  +       
Sbjct: 264 HYFFNISSNTFHCFSGLQELDLTATH-LSELPSGLVGLSTLKKLVLSANKFENLCQISAS 322

Query: 305 NCSQLQNLVLSHNTLSGIVPPE-IGNLTHLRQLDLSHNFIN--GTIPSQLGYIPNISAVD 361
           N   L +L +  NT    +    + NL +LR+LDLSH+ I        QL  + ++ +++
Sbjct: 323 NFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLN 382

Query: 362 LSKNNLSGVVPASVRIIPKLIV---SENNLE 389
           LS N    +   + +  P+L +   +   L+
Sbjct: 383 LSYNEPLSLKTEAFKECPQLELLDLAFTRLK 413

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score =  187 bits (477), Expect = 7e-54
 Identities = 77/358 (21%), Positives = 135/358 (37%), Gaps = 13/358 (3%)

Query: 35  IPSEIGALSKLEELALPYNSLTGTIPAEIG--SLRNLVELDLSNNILNGSIPLEFGNLKD 92
           I       +  + L          I   +   ++++L      +       P  F  L +
Sbjct: 194 IEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCE 253

Query: 93  LD--ALRLRGNKLDGLIPSSIGNLTNLTHLDLSLNQLSGRLPQEVGNLKNLLSLFLDNNN 150
           +   ++ L+ +    +  ++    + L  LDL+   LS  LP  +  L  L  L L  N 
Sbjct: 254 MSVESINLQKHYFFNISSNTFHCFSGLQELDLTATHLS-ELPSGLVGLSTLKKLVLSANK 312

Query: 151 LTGPIPSTLYHLNQLSNLYLAYNNLVGPLPKEV-GNMKNLDSLLLNRNSLTGPIPSTIGY 209
                  +  +   L++L +  N     L      N++NL  L L+ + +       +  
Sbjct: 313 FENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQL 372

Query: 210 LNLGG--KLDLSHNRLDSPIPPTIGNLTNLTSLDLSSNQLSGLLPREV-GNLKYLDSLSL 266
            NL     L+LS+N   S           L  LDL+  +L     +    NL  L  L+L
Sbjct: 373 RNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNL 432

Query: 267 DGNNLIGSIPPTIGYLTNLTSLNLGYNQLSSSI---PPELMNCSQLQNLVLSHNTLSGIV 323
             + L  S       L  L  LNL  N            L    +L+ LVLS   LS I 
Sbjct: 433 SHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSID 492

Query: 324 PPEIGNLTHLRQLDLSHNFINGTIPSQLGYIPNISAVDLSKNNLSGVVPASVRIIPKL 381
                +L  +  +DLSHN +  +    L ++  I  ++L+ N++S ++P+ + I+ + 
Sbjct: 493 QHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGIY-LNLASNHISIILPSLLPILSQQ 549

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score =  180 bits (459), Expect = 3e-51
 Identities = 80/379 (21%), Positives = 136/379 (35%), Gaps = 13/379 (3%)

Query: 2   DNNGNAAELSQLNFTCFPNLESIIIPYTLLSGRIPSEIG--ALSKLEELALPYNSLTGTI 59
           + NGN     +         +S+    T     I   +    +  L              
Sbjct: 185 NLNGNDIAGIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDIS 244

Query: 60  PAEIGSLR--NLVELDLSNNILNGSIPLEFGNLKDLDALRLRGNKLDGLIPSSIGNLTNL 117
           PA    L   ++  ++L  +         F     L  L L    L   +PS +  L+ L
Sbjct: 245 PAVFEGLCEMSVESINLQKHYFFNISSNTFHCFSGLQELDLTATHLSE-LPSGLVGLSTL 303

Query: 118 THLDLSLNQLSGRLPQEVGNLKNLLSLFLDNNNLTGPIPS-TLYHLNQLSNLYLAYNNL- 175
             L LS N+          N  +L  L +  N     + +  L +L  L  L L+++++ 
Sbjct: 304 KKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIE 363

Query: 176 -VGPLPKEVGNMKNLDSLLLNRNSLTGPIPSTIGYLNLGGKLDLSHNRLDSPIPPTI-GN 233
                  ++ N+ +L SL L+ N                  LDL+  RL      +   N
Sbjct: 364 TSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQN 423

Query: 234 LTNLTSLDLSSNQLSGLLPREVGNLKYLDSLSLDGNNLIGSI---PPTIGYLTNLTSLNL 290
           L  L  L+LS + L     +    L  L  L+L GN+          ++  L  L  L L
Sbjct: 424 LHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVL 483

Query: 291 GYNQLSSSIPPELMNCSQLQNLVLSHNTLSGIVPPEIGNLTHLRQLDLSHNFINGTIPSQ 350
            +  LSS       +   + ++ LSHN L+      + +L  +  L+L+ N I+  +PS 
Sbjct: 484 SFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGI-YLNLASNHISIILPSL 542

Query: 351 LGYIPNISAVDLSKNNLSG 369
           L  +     ++L +N L  
Sbjct: 543 LPILSQQRTINLRQNPLDC 561

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score =  175 bits (446), Expect = 2e-49
 Identities = 72/390 (18%), Positives = 133/390 (34%), Gaps = 17/390 (4%)

Query: 15  FTCFPNLESIIIPYTLLSGRIPSEIGALSKLE--ELALPYNSLTGTIPAEIGSLRNLVEL 72
                 L+ +      +      ++ +L +     L L  N +   I            L
Sbjct: 149 GFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGNDIA-GIEPGAFDSAVFQSL 207

Query: 73  DLSNNILNGSIP--LEFGNLKDLDALRLRGNKLDGLIPSSIGNL--TNLTHLDLSLNQLS 128
           +         I   L+   ++ L          + + P+    L   ++  ++L  +   
Sbjct: 208 NFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFF 267

Query: 129 GRLPQEVGNLKNLLSLFLDNNNLTGPIPSTLYHLNQLSNLYLAYNNLVGPLPKEVGNMKN 188
                       L  L L   +L+  +PS L  L+ L  L L+ N           N  +
Sbjct: 268 NISSNTFHCFSGLQELDLTATHLSE-LPSGLVGLSTLKKLVLSANKFENLCQISASNFPS 326

Query: 189 LDSLLLNRNSLTGPIPS-TIGYLNLGGKLDLSHNRLDS--PIPPTIGNLTNLTSLDLSSN 245
           L  L +  N+    + +  +  L    +LDLSH+ +++       + NL++L SL+LS N
Sbjct: 327 LTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYN 386

Query: 246 QLSGLLPREVGNLKYLDSLSLDGNNLIGSIPPTI-GYLTNLTSLNLGYNQLSSSIPPELM 304
           +   L          L+ L L    L      +    L  L  LNL ++ L  S      
Sbjct: 387 EPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFD 446

Query: 305 NCSQLQNLVLSHNTLSGIV---PPEIGNLTHLRQLDLSHNFINGTIPSQLGYIPNISAVD 361
               LQ+L L  N            +  L  L  L LS   ++         +  ++ VD
Sbjct: 447 GLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVD 506

Query: 362 LSKNNLSGVVPASVRIIPKLIV--SENNLE 389
           LS N L+     ++  +  + +  + N++ 
Sbjct: 507 LSHNRLTSSSIEALSHLKGIYLNLASNHIS 536

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score =  108 bits (273), Expect = 6e-26
 Identities = 45/192 (23%), Positives = 74/192 (38%), Gaps = 4/192 (2%)

Query: 216 LDLSHNRLDSPIPPTIGNLTNLTSLDLSSNQLSGLLPREVGNLKYLDSLSLDGNNLIGSI 275
           L+ S N L +    T   L NLT LDL+  Q+  +      +   LD+L L  N LI   
Sbjct: 38  LEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIFMA 97

Query: 276 PPTIGYLTNLTSLNLGYNQLSSSIPPELMNCSQLQNLVLSHNTLSGIVPPEIGNLTHLRQ 335
              +     L  L      +SS     L N   L++L L  N +S I  P+      L+ 
Sbjct: 98  ETALSGPKALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKV 157

Query: 336 LDLSHNFINGTIPSQLGYIPNISAV--DLSKNNLSGVVPASVRIIP--KLIVSENNLELE 391
           LD  +N I+      +  +   + +  +L+ N+++G+ P +        L        L 
Sbjct: 158 LDFQNNAIHYLSKEDMSSLQQATNLSLNLNGNDIAGIEPGAFDSAVFQSLNFGGTQNLLV 217

Query: 392 NSTSSENAPPPQ 403
                +N+    
Sbjct: 218 IFKGLKNSTIQS 229

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score =  177 bits (452), Expect = 2e-52
 Identities = 83/336 (24%), Positives = 162/336 (48%), Gaps = 23/336 (6%)

Query: 37  SEIGALSKLEELALPYNSLTGTIPAEIGSLRNLVELDLSNNILNGSIPLEFGNLKDLDAL 96
                L++     L   S+T  +      L ++ +L ++   +  SI      L +L+ L
Sbjct: 16  FPDADLAEGIRAVLQKASVTDVVT--QEELESITKLVVAGEKVA-SIQ-GIEYLTNLEYL 71

Query: 97  RLRGNKLDGLIPSSIGNLTNLTHLDLSLNQLSGRLPQEVGNLKNLLSLFLDNNNLTGPIP 156
            L GN++  + P  + NL  LT+L +  N+++      + NL NL  L+L+ +N++   P
Sbjct: 72  NLNGNQITDISP--LSNLVKLTNLYIGTNKITD--ISALQNLTNLRELYLNEDNISDISP 127

Query: 157 STLYHLNQLSNLYLAYNNLVGPLPKEVGNMKNLDSLLLNRNSLTGPIPSTIGYLNLGGKL 216
             L +L ++ +L L  N+ +      + NM  L+ L +  + +    P  I  L     L
Sbjct: 128 --LANLTKMYSLNLGANHNLS-DLSPLSNMTGLNYLTVTESKVKDVTP--IANLTDLYSL 182

Query: 217 DLSHNRLDSPIPPTIGNLTNLTSLDLSSNQLSGLLPREVGNLKYLDSLSLDGNNLIGSIP 276
            L++N+++   P  + +LT+L       NQ++ + P  V N+  L+SL +  N +    P
Sbjct: 183 SLNYNQIEDISP--LASLTSLHYFTAYVNQITDITP--VANMTRLNSLKIGNNKITDLSP 238

Query: 277 PTIGYLTNLTSLNLGYNQLSSSIPPELMNCSQLQNLVLSHNTLSGIVPPEIGNLTHLRQL 336
             +  L+ LT L +G NQ+S      + + ++L+ L +  N +S I    + NL+ L  L
Sbjct: 239 --LANLSQLTWLEIGTNQISD--INAVKDLTKLKMLNVGSNQISDI--SVLNNLSQLNSL 292

Query: 337 DLSHNFINGTIPSQLGYIPNISAVDLSKNNLSGVVP 372
            L++N +       +G + N++ + LS+N+++ + P
Sbjct: 293 FLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRP 328

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score =  171 bits (437), Expect = 3e-50
 Identities = 93/333 (27%), Positives = 145/333 (43%), Gaps = 23/333 (6%)

Query: 36  PSEIGALSKLEELALPYNSLTGTIPAEIGSLRNLVELDLSNNILNGSIPLEFGNLKDLDA 95
                 L  + +L +    +       I  L NL  L+L+ N +    PL   NL  L  
Sbjct: 37  VVTQEELESITKLVVAGEKVAS--IQGIEYLTNLEYLNLNGNQITDISPL--SNLVKLTN 92

Query: 96  LRLRGNKLDGLIPSSIGNLTNLTHLDLSLNQLSGRLPQEVGNLKNLLSLFLDNNNLTGPI 155
           L +  NK+     S++ NLTNL  L L+ + +S      + NL  + SL L  N+     
Sbjct: 93  LYIGTNKIT--DISALQNLTNLRELYLNEDNISD--ISPLANLTKMYSLNLGANHNLS-D 147

Query: 156 PSTLYHLNQLSNLYLAYNNLVGPLPKEVGNMKNLDSLLLNRNSLTGPIPSTIGYLNLGGK 215
            S L ++  L+ L +  + +    P  + N+ +L SL LN N +    P  +  L     
Sbjct: 148 LSPLSNMTGLNYLTVTESKVKDVTP--IANLTDLYSLSLNYNQIEDISP--LASLTSLHY 203

Query: 216 LDLSHNRLDSPIPPTIGNLTNLTSLDLSSNQLSGLLPREVGNLKYLDSLSLDGNNLIGSI 275
                N++    P  + N+T L SL + +N+++ L P  + NL  L  L +  N +  S 
Sbjct: 204 FTAYVNQITDITP--VANMTRLNSLKIGNNKITDLSP--LANLSQLTWLEIGTNQI--SD 257

Query: 276 PPTIGYLTNLTSLNLGYNQLSSSIPPELMNCSQLQNLVLSHNTLSGIVPPEIGNLTHLRQ 335
              +  LT L  LN+G NQ+S      L N SQL +L L++N L       IG LT+L  
Sbjct: 258 INAVKDLTKLKMLNVGSNQISD--ISVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTT 315

Query: 336 LDLSHNFINGTIPSQLGYIPNISAVDLSKNNLS 368
           L LS N I    P  L  +  + + D +   + 
Sbjct: 316 LFLSQNHITDIRP--LASLSKMDSADFANQVIK 346

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score =  169 bits (431), Expect = 2e-49
 Identities = 73/330 (22%), Positives = 138/330 (41%), Gaps = 23/330 (6%)

Query: 14  NFTCFPNLESIIIPYTLLSGRIPSEIGALSKLEELALPYNSLTGTIPAEIGSLRNLVELD 73
                 ++  +++    ++      I  L+ LE L L  N +T   P  + +L  L  L 
Sbjct: 39  TQEELESITKLVVAGEKVAS--IQGIEYLTNLEYLNLNGNQITDISP--LSNLVKLTNLY 94

Query: 74  LSNNILNGSIPLEFGNLKDLDALRLRGNKLDGLIPSSIGNLTNLTHLDLSLNQLSGRLPQ 133
           +  N +  +      NL +L  L L  + +  + P  + NLT +  L+L  N        
Sbjct: 95  IGTNKI--TDISALQNLTNLRELYLNEDNISDISP--LANLTKMYSLNLGANHNLS-DLS 149

Query: 134 EVGNLKNLLSLFLDNNNLTGPIPSTLYHLNQLSNLYLAYNNLVGPLPKEVGNMKNLDSLL 193
            + N+  L  L +  + +    P  + +L  L +L L YN +       + ++ +L    
Sbjct: 150 PLSNMTGLNYLTVTESKVKDVTP--IANLTDLYSLSLNYNQIEDI--SPLASLTSLHYFT 205

Query: 194 LNRNSLTGPIPSTIGYLNLGGKLDLSHNRLDSPIPPTIGNLTNLTSLDLSSNQLSGLLPR 253
              N +T   P  +  +     L + +N++    P  + NL+ LT L++ +NQ+S +   
Sbjct: 206 AYVNQITDITP--VANMTRLNSLKIGNNKITDLSP--LANLSQLTWLEIGTNQISDI--N 259

Query: 254 EVGNLKYLDSLSLDGNNLIGSIPPTIGYLTNLTSLNLGYNQLSSSIPPELMNCSQLQNLV 313
            V +L  L  L++  N +  S    +  L+ L SL L  NQL +     +   + L  L 
Sbjct: 260 AVKDLTKLKMLNVGSNQI--SDISVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLF 317

Query: 314 LSHNTLSGIVPPEIGNLTHLRQLDLSHNFI 343
           LS N ++ I    + +L+ +   D ++  I
Sbjct: 318 LSQNHITDI--RPLASLSKMDSADFANQVI 345

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score =  148 bits (377), Expect = 1e-41
 Identities = 68/304 (22%), Positives = 136/304 (44%), Gaps = 23/304 (7%)

Query: 69  LVELDLSNNILNGSIPLEFGNLKDLDALRLRGNKLDGLIPSSIGNLTNLTHLDLSLNQLS 128
              L      +N   P    +L +     L+   +  ++      L ++T L ++  +++
Sbjct: 2   AATLATLPAPINQIFPDA--DLAEGIRAVLQKASVTDVVT--QEELESITKLVVAGEKVA 57

Query: 129 GRLPQEVGNLKNLLSLFLDNNNLTGPIPSTLYHLNQLSNLYLAYNNLVGPLPKEVGNMKN 188
               Q +  L NL  L L+ N +T   P  L +L +L+NLY+  N +       + N+ N
Sbjct: 58  S--IQGIEYLTNLEYLNLNGNQITDISP--LSNLVKLTNLYIGTNKITD--ISALQNLTN 111

Query: 189 LDSLLLNRNSLTGPIPSTIGYLNLGGKLDLSHNRLDSPIPPTIGNLTNLTSLDLSSNQLS 248
           L  L LN ++++   P  +  L     L+L  N   S     + N+T L  L ++ +++ 
Sbjct: 112 LRELYLNEDNISDISP--LANLTKMYSLNLGANHNLS-DLSPLSNMTGLNYLTVTESKVK 168

Query: 249 GLLPREVGNLKYLDSLSLDGNNLIGSIPPTIGYLTNLTSLNLGYNQLSSSIPPELMNCSQ 308
            + P  + NL  L SLSL+ N +    P  +  LT+L       NQ++   P  + N ++
Sbjct: 169 DVTP--IANLTDLYSLSLNYNQIEDISP--LASLTSLHYFTAYVNQITDITP--VANMTR 222

Query: 309 LQNLVLSHNTLSGIVPPEIGNLTHLRQLDLSHNFINGTIPSQLGYIPNISAVDLSKNNLS 368
           L +L + +N ++ +    + NL+ L  L++  N I  +  + +  +  +  +++  N +S
Sbjct: 223 LNSLKIGNNKITDL--SPLANLSQLTWLEIGTNQI--SDINAVKDLTKLKMLNVGSNQIS 278

Query: 369 GVVP 372
            +  
Sbjct: 279 DISV 282

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score =  143 bits (364), Expect = 1e-39
 Identities = 61/283 (21%), Positives = 122/283 (43%), Gaps = 19/283 (6%)

Query: 14  NFTCFPNLESIIIPYTLLSGRIPSEIGALSKLEELALPYNSLTGTIPAEIGSLRNLVELD 73
             +    L ++ I    ++    S +  L+ L EL L  ++++   P  + +L  +  L+
Sbjct: 83  PLSNLVKLTNLYIGTNKIT--DISALQNLTNLRELYLNEDNISDISP--LANLTKMYSLN 138

Query: 74  LSNNILNGSIPLEFGNLKDLDALRLRGNKLDGLIPSSIGNLTNLTHLDLSLNQLSGRLPQ 133
           L  N     +     N+  L+ L +  +K+  + P  I NLT+L  L L+ NQ+      
Sbjct: 139 LGANHNLSDLS-PLSNMTGLNYLTVTESKVKDVTP--IANLTDLYSLSLNYNQIED--IS 193

Query: 134 EVGNLKNLLSLFLDNNNLTGPIPSTLYHLNQLSNLYLAYNNLVGPLPKEVGNMKNLDSLL 193
            + +L +L       N +T   P  + ++ +L++L +  N +    P  + N+  L  L 
Sbjct: 194 PLASLTSLHYFTAYVNQITDITP--VANMTRLNSLKIGNNKITDLSP--LANLSQLTWLE 249

Query: 194 LNRNSLTGPIPSTIGYLNLGGKLDLSHNRLDSPIPPTIGNLTNLTSLDLSSNQLSGLLPR 253
           +  N ++    + +  L     L++  N++       + NL+ L SL L++NQL      
Sbjct: 250 IGTNQISDI--NAVKDLTKLKMLNVGSNQISDI--SVLNNLSQLNSLFLNNNQLGNEDME 305

Query: 254 EVGNLKYLDSLSLDGNNLIGSIPPTIGYLTNLTSLNLGYNQLS 296
            +G L  L +L L  N++    P  +  L+ + S +     + 
Sbjct: 306 VIGGLTNLTTLFLSQNHITDIRP--LASLSKMDSADFANQVIK 346

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score =  181 bits (462), Expect = 1e-51
 Identities = 86/418 (20%), Positives = 137/418 (32%), Gaps = 40/418 (9%)

Query: 9   ELSQLNFTCFPNLESIIIPYTLLSGRIPSEIGALSKLEELALPYNSLTGTIPAEIGSLRN 68
            L   +F  FP L+ + +    +         +LS L  L L  N +          L +
Sbjct: 42  HLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSS 101

Query: 69  LVELDLSNNILNGSIPLEFGNLKDLDALRLRGNKLDGL-IPSSIGNLTNLTHLDLSLNQL 127
           L +L      L        G+LK L  L +  N +    +P    NLTNL HLDLS N++
Sbjct: 102 LQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKI 161

Query: 128 SGRLPQEVGNLKNL----LSLFLDNNNLTGPIPSTLYHLNQLSNLYLAYNNLVGPLPKEV 183
                 ++  L  +    LSL L  N +    P     +  L  L L  N     + K  
Sbjct: 162 QSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIR-LHKLTLRNNFDSLNVMKTC 220

Query: 184 -GNMKNLDSL------LLNRNSLTGPIPSTIGYLNLGGKLDLSHNRLD---SPIPPTIGN 233
              +  L+          N  +L     S +  L      +     LD     I      
Sbjct: 221 IQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNC 280

Query: 234 LTNLTSLDLSSNQLSGLLPR-EVGNLKYLD----------------SLSLDGNNLIGSIP 276
           LTN++S  L S  +  +         ++L+                   L   +  G   
Sbjct: 281 LTNVSSFSLVSVTIERVKDFSYNFGWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNA 340

Query: 277 PTIGYLTNLTSLNLGYNQLS--SSIPPELMNCSQLQNLVLSHNTLSGIVPPEIGNLTHLR 334
            +   L +L  L+L  N LS            + L+ L LS N +  +       L  L 
Sbjct: 341 FSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITM-SSNFLGLEQLE 399

Query: 335 QLDLSHNFINGTIP-SQLGYIPNISAVDLSKNNLSGVVPASVRIIPKLIV---SENNL 388
            LD  H+ +      S    + N+  +D+S  +           +  L V   + N+ 
Sbjct: 400 HLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSF 457

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score =  181 bits (461), Expect = 1e-51
 Identities = 79/365 (21%), Positives = 132/365 (36%), Gaps = 23/365 (6%)

Query: 20  NLESIIIPYTLLSGRIPSE-IGALSKLEELALPYNSLTGTI---PAEIGSLRNLVELDLS 75
            L  + +     S  +    I  L+ LE   L              +  +L  L  L + 
Sbjct: 201 RLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIE 260

Query: 76  NNILN------GSIPLEFGNLKDLDALRLRGNKLDGLIPSSIGNLTNLTHLDLSLNQLSG 129
              L         I   F  L ++ +  L    ++ +   S        HL+L   +   
Sbjct: 261 EFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDFS--YNFGWQHLELVNCKFGQ 318

Query: 130 RLPQEVGNLKNLLSLFLDNNNLTGPIPSTLYHLNQLSNLYLAYNNL--VGPLPKEVGNMK 187
               ++ +LK L        +  G    +   L  L  L L+ N L   G   +      
Sbjct: 319 FPTLKLKSLKRL-----TFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTT 373

Query: 188 NLDSLLLNRNSLTGPIPSTIGYLNLGGKLDLSHNRLDSPIPPTI-GNLTNLTSLDLSSNQ 246
           +L  L L+ N +     + +G   L   LD  H+ L      ++  +L NL  LD+S   
Sbjct: 374 SLKYLDLSFNGVITMSSNFLGLEQLE-HLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTH 432

Query: 247 LSGLLPREVGNLKYLDSLSLDGNNLIGSIPP-TIGYLTNLTSLNLGYNQLSSSIPPELMN 305
                      L  L+ L + GN+   +  P     L NLT L+L   QL    P    +
Sbjct: 433 TRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNS 492

Query: 306 CSQLQNLVLSHNTLSGIVPPEIGNLTHLRQLDLSHNFINGTIPSQLGYIP-NISAVDLSK 364
            S LQ L +SHN    +       L  L+ LD S N I  +   +L + P +++ ++L++
Sbjct: 493 LSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQ 552

Query: 365 NNLSG 369
           N+ + 
Sbjct: 553 NDFAC 557

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score =  179 bits (456), Expect = 7e-51
 Identities = 72/372 (19%), Positives = 122/372 (32%), Gaps = 26/372 (6%)

Query: 35  IPSEIGALSKLEELALPYNSLTGTIPAE-IGSLRNLVELDLSNNILNGSIPLE------F 87
           I        +L +L L  N  +  +    I  L  L    L          LE       
Sbjct: 192 IQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSAL 251

Query: 88  GNLKDLDALRLRGNKLD---GLIPSSIGNLTNLTHLDLSLNQLSGRLPQEVGNLKNLLSL 144
             L +L     R   LD     I      LTN++   L    +                L
Sbjct: 252 EGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKD--FSYNFGWQHL 309

Query: 145 FLDNNNLTGPIPSTLYHLNQLSNLYLAYNNLVGPLPKEVGNMKNLDSLLLNRNSLT--GP 202
            L N          L  L +L+       N    +     ++ +L+ L L+RN L+  G 
Sbjct: 310 ELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAFSEV-----DLPSLEFLDLSRNGLSFKGC 364

Query: 203 IPSTIGYLNLGGKLDLSHNRLDSPIPPTIGNLTNLTSLDLSSNQLSGLLPREV-GNLKYL 261
              +         LDLS N +   +      L  L  LD   + L  +    V  +L+ L
Sbjct: 365 CSQSDFGTTSLKYLDLSFNGV-ITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNL 423

Query: 262 DSLSLDGNNLIGSIPPTIGYLTNLTSLNLGYNQLSSSIPPE-LMNCSQLQNLVLSHNTLS 320
             L +   +   +       L++L  L +  N    +  P+       L  L LS   L 
Sbjct: 424 IYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLE 483

Query: 321 GIVPPEIGNLTHLRQLDLSHNFINGTIPSQLGYIPNISAVDLSKNNLSGVVPASVRIIPK 380
            + P    +L+ L+ L++SHN            + ++  +D S N++       ++  P 
Sbjct: 484 QLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPS 543

Query: 381 ----LIVSENNL 388
               L +++N+ 
Sbjct: 544 SLAFLNLTQNDF 555

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score =  175 bits (447), Expect = 1e-49
 Identities = 75/372 (20%), Positives = 121/372 (32%), Gaps = 41/372 (11%)

Query: 35  IPSEIGALSKLEELALPYNSLTGTIPAEIGSLRNLVELDLSNNILNGSIPLEFGNLKDLD 94
           IP  +      + L L +N L         S   L  LDLS   +       + +L  L 
Sbjct: 22  IPDNL--PFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLS 79

Query: 95  ALRLRGNKLDGLIPSSIGNLTNLTHLDLSLNQLSGRLPQEVGNLKNLLSLFLDNNNLTG- 153
            L L GN +  L   +   L++L  L      L+      +G+LK L  L + +N +   
Sbjct: 80  TLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSF 139

Query: 154 PIPSTLYHLNQLSNLYLAYNNLVGPLPKEVGNMKNLD----SLLLNRNSLTGPIPSTIGY 209
            +P    +L  L +L L+ N +      ++  +  +     SL L+ N +    P     
Sbjct: 140 KLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKE 199

Query: 210 LNLGGKLDLSHNRLDSPIPPT-IGNLTNLTSLDLSSNQLSGLLPREV------GNLKYLD 262
           + L  KL L +N     +  T I  L  L    L   +       E         L  L 
Sbjct: 200 IRL-HKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLT 258

Query: 263 SLSLDGNNL---IGSIPPTIGYLTNLTSLNLGYNQLSSSIPPELMNCSQLQNLVLSHNTL 319
                   L   +  I      LTN++S +L    +              Q+L L +   
Sbjct: 259 IEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKD--FSYNFGWQHLELVNCKF 316

Query: 320 SGIVP-------------------PEIGNLTHLRQLDLSHNFIN--GTIPSQLGYIPNIS 358
                                       +L  L  LDLS N ++  G          ++ 
Sbjct: 317 GQFPTLKLKSLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLK 376

Query: 359 AVDLSKNNLSGV 370
            +DLS N +  +
Sbjct: 377 YLDLSFNGVITM 388

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score =  171 bits (436), Expect = 4e-48
 Identities = 80/362 (22%), Positives = 125/362 (34%), Gaps = 21/362 (5%)

Query: 3   NNGNAAELSQLNFTCFPNLESIIIPY------TLLSGRIPSEIGALSKLEELALPYNSLT 56
              N   L + + +    L ++ I              I      L+ +   +L   ++ 
Sbjct: 236 EFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIE 295

Query: 57  GTIPAEIGSLRNLVELDLSNNILNGSIPLEFGNLKDLDALRLRGNKLDGLIPSSIGNLTN 116
                          L+L N        L+  +LK L     +G         S  +L +
Sbjct: 296 RVKD--FSYNFGWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGG-----NAFSEVDLPS 348

Query: 117 LTHLDLSLNQLS--GRLPQEVGNLKNLLSLFLDNNNLTGPIPSTLYHLNQLSNLYLAYNN 174
           L  LDLS N LS  G   Q      +L  L L  N +   + S    L QL +L   ++N
Sbjct: 349 LEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVIT-MSSNFLGLEQLEHLDFQHSN 407

Query: 175 LVGPLPKEV-GNMKNLDSLLLNRNSLTGPIPSTIGYLNLGGKLDLSHNRLDSPIPP-TIG 232
           L       V  +++NL  L ++              L+    L ++ N       P    
Sbjct: 408 LKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFT 467

Query: 233 NLTNLTSLDLSSNQLSGLLPREVGNLKYLDSLSLDGNNLIGSIPPTIGYLTNLTSLNLGY 292
            L NLT LDLS  QL  L P    +L  L  L++  NN           L +L  L+   
Sbjct: 468 ELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSL 527

Query: 293 NQLSSSIPPELMNC-SQLQNLVLSHNTLSGIVPPE--IGNLTHLRQLDLSHNFINGTIPS 349
           N + +S   EL +  S L  L L+ N  +     +  +  +   RQL +    +    PS
Sbjct: 528 NHIMTSKKQELQHFPSSLAFLNLTQNDFACTCEHQSFLQWIKDQRQLLVEVERMECATPS 587

Query: 350 QL 351
             
Sbjct: 588 DK 589

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score =  168 bits (428), Expect = 7e-47
 Identities = 72/363 (19%), Positives = 123/363 (33%), Gaps = 28/363 (7%)

Query: 59  IPAEIGSLRNLVELDLSNNILNGSIPLEFGNLKDLDALRLRGNKLDGLIPSSIGNLTNLT 118
           IP  +    +   LDLS N L       F +  +L  L L   ++  +   +  +L++L+
Sbjct: 22  IPDNLPF--STKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLS 79

Query: 119 HLDLSLNQLSGRLPQEVGNLKNLLSLFLDNNNLTGPIPSTLYHLNQLSNLYLAYNNLVG- 177
            L L+ N +          L +L  L     NL       + HL  L  L +A+N +   
Sbjct: 80  TLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSF 139

Query: 178 PLPKEVGNMKNLDSLLLNRNSLTGPIPSTIGYL----NLGGKLDLSHNRLDSPIPPTIGN 233
            LP+   N+ NL+ L L+ N +     + +  L     L   LDLS N ++  I P    
Sbjct: 140 KLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNF-IQPGAFK 198

Query: 234 LTNLTSLDLSSNQLSGLLPREV-GNLKYLDSLSLDGNNLIGSI---PPTIGYLTNLTSLN 289
              L  L L +N  S  + +     L  L+   L                  L  L +L 
Sbjct: 199 EIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLT 258

Query: 290 LGYNQLSS------SIPPELMNCSQLQNLVLSHNTLSGIVPPEIGNLTHLRQLDLSHNFI 343
           +   +L+        I       + + +  L   T+  +           + L+L +   
Sbjct: 259 IEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKD--FSYNFGWQHLELVNCKF 316

Query: 344 NGTIPSQLGYIPNISAVDLSKNNLSGVVPASVRIIPKLIV---SENNLELENSTSSENAP 400
                 +L  +       L+  +  G    S   +P L     S N L  +   S  +  
Sbjct: 317 GQFPTLKLKSLKR-----LTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFG 371

Query: 401 PPQ 403
              
Sbjct: 372 TTS 374

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score =  114 bits (288), Expect = 7e-28
 Identities = 41/179 (22%), Positives = 73/179 (40%), Gaps = 4/179 (2%)

Query: 215 KLDLSHNRLDSPIPPTIGNLTNLTSLDLSSNQLSGLLPREVGNLKYLDSLSLDGNNLIGS 274
                       IP  +    +  +LDLS N L  L      +   L  L L    +   
Sbjct: 11  TYQCMELNFYK-IPDNL--PFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTI 67

Query: 275 IPPTIGYLTNLTSLNLGYNQLSSSIPPELMNCSQLQNLVLSHNTLSGIVPPEIGNLTHLR 334
                  L++L++L L  N + S         S LQ LV     L+ +    IG+L  L+
Sbjct: 68  EDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLK 127

Query: 335 QLDLSHNFINGT-IPSQLGYIPNISAVDLSKNNLSGVVPASVRIIPKLIVSENNLELEN 392
           +L+++HN I    +P     + N+  +DLS N +  +    +R++ ++ +   +L+L  
Sbjct: 128 ELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSL 186

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 60.8 bits (148), Expect = 3e-10
 Identities = 27/142 (19%), Positives = 47/142 (33%), Gaps = 3/142 (2%)

Query: 1   MDNNGNAAELSQLNFTCFPNLESIIIPYTLLSGRIPSEIGALSKLEELALPYNSLTGTIP 60
           M  N          FT   NL  + +    L    P+   +LS L+ L + +N+      
Sbjct: 452 MAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDT 511

Query: 61  AEIGSLRNLVELDLSNNILNGSIPLEFGNL-KDLDALRLRGNKLDGLIPSS--IGNLTNL 117
                L +L  LD S N +  S   E  +    L  L L  N           +  + + 
Sbjct: 512 FPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTCEHQSFLQWIKDQ 571

Query: 118 THLDLSLNQLSGRLPQEVGNLK 139
             L + + ++    P +   + 
Sbjct: 572 RQLLVEVERMECATPSDKQGMP 593

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score =  163 bits (415), Expect = 3e-47
 Identities = 55/289 (19%), Positives = 95/289 (32%), Gaps = 23/289 (7%)

Query: 34  RIPSEIGALSKLEELALPYNSLTGTIPAEIGSLR--NLVELDLSNNILNGSIPLEFGNLK 91
                    +  +       +L       +        V L+L +  L    P +   L 
Sbjct: 47  HSAWRQANSNNPQIETRTGRALK-ATADLLEDATQPGRVALELRSVPLP-QFPDQAFRLS 104

Query: 92  DLDALRLRGNKLDGLIPSSIGNLTNLTHLDLSLNQLSGRLPQEVGNLKNLLSLFLDNNNL 151
            L  + +    L  L P ++     L  L L+ N L   LP  + +L  L  L +     
Sbjct: 105 HLQHMTIDAAGLMEL-PDTMQQFAGLETLTLARNPLR-ALPASIASLNRLRELSIRACPE 162

Query: 152 TGPIPSTLYHLNQLSNLYLAYNNLVGPLPKEVGNMKNLDSLLLNRNSLTGPIPSTIGYLN 211
              +P  L   +                  E   + NL SL L    +   +P++I  L 
Sbjct: 163 LTELPEPLASTD---------------ASGEHQGLVNLQSLRLEWTGIRS-LPASIANLQ 206

Query: 212 LGGKLDLSHNRLDSPIPPTIGNLTNLTSLDLSSNQLSGLLPREVGNLKYLDSLSLDGNNL 271
               L + ++ L + + P I +L  L  LDL         P   G    L  L L   + 
Sbjct: 207 NLKSLKIRNSPLSA-LGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSN 265

Query: 272 IGSIPPTIGYLTNLTSLNLGYNQLSSSIPPELMNCSQLQNLVLSHNTLS 320
           + ++P  I  LT L  L+L      S +P  +        +++  +  +
Sbjct: 266 LLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPHLQA 314

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score =  147 bits (374), Expect = 3e-41
 Identities = 62/312 (19%), Positives = 110/312 (35%), Gaps = 21/312 (6%)

Query: 81  GSIPLEFGNLKDLDALRLRGNKLDGLIPSSIGNLTNLTHLDLSLNQLSGRLPQEVGNLKN 140
           GS      +    + L  +G+         +       + D +    + R      N  N
Sbjct: 2   GSSHHHHHHSSGRENLYFQGSTALRPYHDVLSQWQRHYNADRNRWHSAWRQA----NSNN 57

Query: 141 LLSLFLDNNNLTGPIPSTLYHLNQ--LSNLYLAYNNLVGPLPKEVGNMKNLDSLLLNRNS 198
                     L       L    Q     L L    L    P +   + +L  + ++   
Sbjct: 58  PQIETRTGRALKA-TADLLEDATQPGRVALELRSVPLPQ-FPDQAFRLSHLQHMTIDAAG 115

Query: 199 LTGPIPSTIGYLNLGGKLDLSHNRLDSPIPPTIGNLTNLTSLDLSSNQLSGLLPREVGN- 257
           L   +P T+        L L+ N L + +P +I +L  L  L + +      LP  + + 
Sbjct: 116 LME-LPDTMQQFAGLETLTLARNPLRA-LPASIASLNRLRELSIRACPELTELPEPLAST 173

Query: 258 --------LKYLDSLSLDGNNLIGSIPPTIGYLTNLTSLNLGYNQLSSSIPPELMNCSQL 309
                   L  L SL L+   +  S+P +I  L NL SL +  + LS+ + P + +  +L
Sbjct: 174 DASGEHQGLVNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLSA-LGPAIHHLPKL 231

Query: 310 QNLVLSHNTLSGIVPPEIGNLTHLRQLDLSHNFINGTIPSQLGYIPNISAVDLSKNNLSG 369
           + L L   T     PP  G    L++L L       T+P  +  +  +  +DL       
Sbjct: 232 EELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLS 291

Query: 370 VVPASVRIIPKL 381
            +P+ +  +P  
Sbjct: 292 RLPSLIAQLPAN 303

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 91.2 bits (227), Expect = 1e-20
 Identities = 35/223 (15%), Positives = 79/223 (35%), Gaps = 34/223 (15%)

Query: 176 VGPLPKEVGNMKNLDSLLLNRNSLTGPIPSTIGYLNLGGKLDLS---------------- 219
           +G       +    ++L    ++   P    +         D +                
Sbjct: 1   MGSSHHHHHHSSGRENLYFQGSTALRPYHDVLSQWQRHYNADRNRWHSAWRQANSNNPQI 60

Query: 220 ---HNRLDSPIPPTIGNLT--NLTSLDLSSNQLSGLLPREVGNLKYLDSLSLDGNNLIGS 274
                R        + + T     +L+L S  L    P +   L +L  +++D   L+  
Sbjct: 61  ETRTGRALKATADLLEDATQPGRVALELRSVPLPQ-FPDQAFRLSHLQHMTIDAAGLM-E 118

Query: 275 IPPTIGYLTNLTSLNLGYNQLSSSIPPELMNCSQLQNLVLSHNTLSGIVPPEIGN----- 329
           +P T+     L +L L  N L  ++P  + + ++L+ L +        +P  + +     
Sbjct: 119 LPDTMQQFAGLETLTLARNPL-RALPASIASLNRLRELSIRACPELTELPEPLASTDASG 177

Query: 330 ----LTHLRQLDLSHNFINGTIPSQLGYIPNISAVDLSKNNLS 368
               L +L+ L L    I  ++P+ +  + N+ ++ +  + LS
Sbjct: 178 EHQGLVNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLS 219

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score =  162 bits (412), Expect = 1e-45
 Identities = 105/387 (27%), Positives = 168/387 (43%), Gaps = 31/387 (8%)

Query: 14  NFTCFPNLESIIIPYTLLSGRIPSEIGALSKLEELALPYNSLTGTIPAEIGSLRNLVELD 73
                 NL  I      L+   P  +  L+KL ++ +  N +    P  + +L NL  L 
Sbjct: 63  GVEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADITP--LANLTNLTGLT 118

Query: 74  LSNNILNGSIPLEFGNLKDLDALRLRGNKLDGLIPSSIGNLTNLTHLDLSLNQLSGRLPQ 133
           L NN +    PL   NL +L+ L L  N +  +  S++  LT+L  L            +
Sbjct: 119 LFNNQITDIDPL--KNLTNLNRLELSSNTISDI--SALSGLTSLQQLSFGNQVTD---LK 171

Query: 134 EVGNLKNLLSLFLDNNNLTGPIPSTLYHLNQLSNLYLAYNNLVGPLPKEVGNMKNLDSLL 193
            + NL  L  L + +N ++    S L  L  L +L    N +    P  +G + NLD L 
Sbjct: 172 PLANLTTLERLDISSNKVSDI--SVLAKLTNLESLIATNNQISDITP--LGILTNLDELS 227

Query: 194 LNRNSLTGPIPSTIGYLNLGGKLDLSHNRLDSPIPPTIGNLTNLTSLDLSSNQLSGLLPR 253
           LN N L      T+  L     LDL++N++ +  P  +  LT LT L L +NQ+S + P 
Sbjct: 228 LNGNQLKDI--GTLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNISP- 282

Query: 254 EVGNLKYLDSLSLDGNNLIGSIPPTIGYLTNLTSLNLGYNQLSSSIPPELMNCSQLQNLV 313
            +  L  L +L L+ N L    P  I  L NLT L L +N +S   P  + + ++LQ L 
Sbjct: 283 -LAGLTALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNISDISP--VSSLTKLQRLF 337

Query: 314 LSHNTLSGIVPPEIGNLTHLRQLDLSHNFINGTIPSQLGYIPNISAVDLSKNNLSGVVPA 373
             +N +S +    + NLT++  L   HN I+   P  L  +  I+ + L+    +     
Sbjct: 338 FYNNKVSDV--SSLANLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQAWTNAPVN 393

Query: 374 SVR--IIPKLIVSENNLELENSTSSEN 398
                 IP  + +     +  +T S+ 
Sbjct: 394 YKANVSIPNTVKNVTGALIAPATISDG 420

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score =  158 bits (403), Expect = 3e-44
 Identities = 96/336 (28%), Positives = 153/336 (45%), Gaps = 27/336 (8%)

Query: 37  SEIGALSKLEELALPYNSLTGTIPAEIGSLRNLVELDLSNNILNGSIPLEFGNLKDLDAL 96
               AL++  +  L   ++T T+      L  +  L                 L +L  +
Sbjct: 18  FTDTALAEKMKTVLGKTNVTDTVS--QTDLDQVTTLQADRL--GIKSIDGVEYLNNLTQI 73

Query: 97  RLRGNKLDGLIPSSIGNLTNLTHLDLSLNQLSGRLPQEVGNLKNLLSLFLDNNNLTGPIP 156
               N+L  + P  + NLT L  + ++ NQ++      + NL NL  L L NN +T   P
Sbjct: 74  NFSNNQLTDITP--LKNLTKLVDILMNNNQIAD--ITPLANLTNLTGLTLFNNQITDIDP 129

Query: 157 STLYHLNQLSNLYLAYNNLVGPLPKEVGNMKNLDSLLLNRNSLTGPIPSTIGYLNLGGKL 216
             L +L  L+ L L+ N +       +  + +L  L    N +T   P  +  L    +L
Sbjct: 130 --LKNLTNLNRLELSSNTISD--ISALSGLTSLQQLSFG-NQVTDLKP--LANLTTLERL 182

Query: 217 DLSHNRLDSPIPPTIGNLTNLTSLDLSSNQLSGLLPREVGNLKYLDSLSLDGNNLIGSIP 276
           D+S N++       +  LTNL SL  ++NQ+S + P  +G L  LD LSL+GN L     
Sbjct: 183 DISSNKVSD--ISVLAKLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQLKD--I 236

Query: 277 PTIGYLTNLTSLNLGYNQLSSSIPPELMNCSQLQNLVLSHNTLSGIVPPEIGNLTHLRQL 336
            T+  LTNLT L+L  NQ+S+  P  L   ++L  L L  N +S I    +  LT L  L
Sbjct: 237 GTLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNI--SPLAGLTALTNL 292

Query: 337 DLSHNFINGTIPSQLGYIPNISAVDLSKNNLSGVVP 372
           +L+ N +    P  +  + N++ + L  NN+S + P
Sbjct: 293 ELNENQLEDISP--ISNLKNLTYLTLYFNNISDISP 326

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score =  143 bits (362), Expect = 2e-38
 Identities = 88/359 (24%), Positives = 143/359 (39%), Gaps = 26/359 (7%)

Query: 14  NFTCFPNLESIIIPYTLLSGRIPSEIGALSKLEELALPYNSLTGTIPAEIGSLRNLVELD 73
                 NL  + +    +S    S +  L+ L++L+   N +T   P  + +L  L  LD
Sbjct: 129 PLKNLTNLNRLELSSNTISD--ISALSGLTSLQQLSF-GNQVTDLKP--LANLTTLERLD 183

Query: 74  LSNNILNGSIPLEFGNLKDLDALRLRGNKLDGLIPSSIGNLTNLTHLDLSLNQLSGRLPQ 133
           +S+N +  S       L +L++L    N++  + P  +G LTNL  L L+ NQL      
Sbjct: 184 ISSNKV--SDISVLAKLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQLKD--IG 237

Query: 134 EVGNLKNLLSLFLDNNNLTGPIPSTLYHLNQLSNLYLAYNNLVGPLPKEVGNMKNLDSLL 193
            + +L NL  L L NN ++   P  L  L +L+ L L  N +    P  +  +  L +L 
Sbjct: 238 TLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNISP--LAGLTALTNLE 293

Query: 194 LNRNSLTGPIPSTIGYLNLGGKLDLSHNRLDSPIPPTIGNLTNLTSLDLSSNQLSGLLPR 253
           LN N L    P  I  L     L L  N +    P  + +LT L  L   +N++S +   
Sbjct: 294 LNENQLEDISP--ISNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFYNNKVSDV--S 347

Query: 254 EVGNLKYLDSLSLDGNNLIGSIPPTIGYLTNLTSLNLGYNQLSSSIPPELMNCSQLQNLV 313
            + NL  ++ LS   N +    P  +  LT +T L L     ++  P        + N V
Sbjct: 348 SLANLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQAWTN-APVNYKANVSIPNTV 404

Query: 314 LSHNTLSGIVPPEIGNLTHLRQLDLSHNFINGTIPSQLGYIPNISAVDLSKNNLSGVVP 372
            +      I P  I +     + D++ N  +               +       SG V 
Sbjct: 405 KNVTGAL-IAPATISDGGSYTEPDITWNLPSY-TNEVSYTFSQPVTIGKGTTTFSGTVT 461

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score =  128 bits (323), Expect = 5e-33
 Identities = 80/312 (25%), Positives = 122/312 (39%), Gaps = 21/312 (6%)

Query: 13  LNFTCFPNLESIIIPYTLLSGRIPSEIGALSKLEELALPYNSLTGTIPAEIGSLRNLVEL 72
                   LE + I    +S    S +  L+ LE L    N ++   P  +G L NL EL
Sbjct: 171 KPLANLTTLERLDISSNKVSD--ISVLAKLTNLESLIATNNQISDITP--LGILTNLDEL 226

Query: 73  DLSNNILNGSIPLEFGNLKDLDALRLRGNKLDGLIPSSIGNLTNLTHLDLSLNQLSGRLP 132
            L+ N L         +L +L  L L  N++  L P  +  LT LT L L  NQ+S    
Sbjct: 227 SLNGNQLKD--IGTLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISN--I 280

Query: 133 QEVGNLKNLLSLFLDNNNLTGPIPSTLYHLNQLSNLYLAYNNLVGPLPKEVGNMKNLDSL 192
             +  L  L +L L+ N L    P  + +L  L+ L L +NN+    P  V ++  L  L
Sbjct: 281 SPLAGLTALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNISDISP--VSSLTKLQRL 336

Query: 193 LLNRNSLTGPIPSTIGYLNLGGKLDLSHNRLDSPIPPTIGNLTNLTSLDLSSNQLSGLLP 252
               N ++      +  L     L   HN++    P  + NLT +T L L+    +    
Sbjct: 337 FFYNNKVSDVSS--LANLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQAWTNAPV 392

Query: 253 REVGNLKYLDSLSLDGNNLIGSIPPTIGYLTNLTSLNLGYNQLSSSIPPELMNCSQLQNL 312
               N+   +++      LI   P TI    + T  ++ +N   S         SQ   +
Sbjct: 393 NYKANVSIPNTVKNVTGALI--APATISDGGSYTEPDITWNLP-SYTNEVSYTFSQPVTI 449

Query: 313 VLSHNTLSGIVP 324
                T SG V 
Sbjct: 450 GKGTTTFSGTVT 461

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 78.9 bits (195), Expect = 4e-16
 Identities = 37/159 (23%), Positives = 71/159 (44%), Gaps = 11/159 (6%)

Query: 214 GKLDLSHNRLDSPIPPTIGNLTNLTSLDLSSNQLSGLLPREVGNLKYLDSLSLDGNNLIG 273
           G   ++ +   + I      L       L    ++  +     +L  + +L  D   +  
Sbjct: 4   GSATITQDTPINQIFT-DTALAEKMKTVLGKTNVTDTVS--QTDLDQVTTLQADRLGI-- 58

Query: 274 SIPPTIGYLTNLTSLNLGYNQLSSSIPPELMNCSQLQNLVLSHNTLSGIVPPEIGNLTHL 333
                + YL NLT +N   NQL+   P  L N ++L ++++++N ++ I    + NLT+L
Sbjct: 59  KSIDGVEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADI--TPLANLTNL 114

Query: 334 RQLDLSHNFINGTIPSQLGYIPNISAVDLSKNNLSGVVP 372
             L L +N I    P  L  + N++ ++LS N +S +  
Sbjct: 115 TGLTLFNNQITDIDP--LKNLTNLNRLELSSNTISDISA 151

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score =  162 bits (412), Expect = 1e-44
 Identities = 75/360 (20%), Positives = 114/360 (31%), Gaps = 21/360 (5%)

Query: 35  IPSEIGALSKLEELALPYNSLTGTIPAE-IGSLRNLVELDLSNNILNGSIPLE------F 87
           I  +     KL EL L  N  +  I    + +L  L    L          LE       
Sbjct: 196 IQDQAFQGIKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIM 255

Query: 88  GNLKDLDA--LRLRGNKLDGLIPSSIGNLTNLTHLDLSLNQLSGRLPQEVGNLKNLLSLF 145
             L D+     RL               L N++ + L+   +     ++V       SL 
Sbjct: 256 EGLCDVTIDEFRLTYTNDFSDDIVKFHCLANVSAMSLAGVSIKY--LEDVPKHFKWQSLS 313

Query: 146 LDNNNLTGPIPSTLYHLNQLSNLYLAYNNLVGPLPKEVGNMKNLDSLLLNRNSLTGPIPS 205
           +    L       L  L  L    L  N       K    + +L  L L+RN+L+     
Sbjct: 314 IIRCQLKQFPTLDLPFLKSL---TLTMNKGSISFKK--VALPSLSYLDLSRNALSFSGCC 368

Query: 206 TIGYLNLGG--KLDLSHNRLDSPIPPTIGNLTNLTSLDLSSNQLSGLLPREV-GNLKYLD 262
           +   L       LDLS N     +      L  L  LD   + L  +       +L+ L 
Sbjct: 369 SYSDLGTNSLRHLDLSFNGAII-MSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLL 427

Query: 263 SLSLDGNNLIGSIPPTIGYLTNLTSLNLGYNQLSSSIPPE-LMNCSQLQNLVLSHNTLSG 321
            L +   N           LT+L +L +  N    +       N + L  L LS   L  
Sbjct: 428 YLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQ 487

Query: 322 IVPPEIGNLTHLRQLDLSHNFINGTIPSQLGYIPNISAVDLSKNNLSGVVPASVRIIPKL 381
           I       L  L+ L++SHN +     S    + ++S +D S N +             L
Sbjct: 488 ISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIETSKGILQHFPKSL 547

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score =  160 bits (408), Expect = 5e-44
 Identities = 77/374 (20%), Positives = 122/374 (32%), Gaps = 23/374 (6%)

Query: 10  LSQLNFTCF--PNLESIIIPYTLLSGRIPSE-IGALSKLEELALPYNSLTGTIPAEIGSL 66
           +  +    F    L  + +     S  I    +  L+ L    L           EI   
Sbjct: 193 IDFIQDQAFQGIKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEP 252

Query: 67  R--------NLVELDLSNNILNGSIPLEFGNLKDLDALRLRGNKLDGLIPSSIGNLTNLT 118
                     + E  L+         ++F  L ++ A+ L G  +  L    +       
Sbjct: 253 SIMEGLCDVTIDEFRLTYTNDFSDDIVKFHCLANVSAMSLAGVSIKYL--EDVPKHFKWQ 310

Query: 119 HLDLSLNQLSGRLPQEVGNLKNLLSLFLDNNNLTGPIPSTLYHLNQLSNLYLAYNNL--V 176
            L +   QL         +L  L SL L  N  +         L  LS L L+ N L   
Sbjct: 311 SLSIIRCQLKQ---FPTLDLPFLKSLTLTMNKGSISFKKV--ALPSLSYLDLSRNALSFS 365

Query: 177 GPLPKEVGNMKNLDSLLLNRNSLTGPIPSTIGYLNLGGKLDLSHNRLDSPIPP-TIGNLT 235
           G          +L  L L+ N     + +    L     LD  H+ L          +L 
Sbjct: 366 GCCSYSDLGTNSLRHLDLSFNGAII-MSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLE 424

Query: 236 NLTSLDLSSNQLSGLLPREVGNLKYLDSLSLDGNNLIGSIPP-TIGYLTNLTSLNLGYNQ 294
            L  LD+S              L  L++L + GN+   +         TNLT L+L   Q
Sbjct: 425 KLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQ 484

Query: 295 LSSSIPPELMNCSQLQNLVLSHNTLSGIVPPEIGNLTHLRQLDLSHNFINGTIPSQLGYI 354
           L            +LQ L +SHN L  +       L  L  LD S N I  +      + 
Sbjct: 485 LEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIETSKGILQHFP 544

Query: 355 PNISAVDLSKNNLS 368
            +++  +L+ N+++
Sbjct: 545 KSLAFFNLTNNSVA 558

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score =  159 bits (405), Expect = 1e-43
 Identities = 73/361 (20%), Positives = 128/361 (35%), Gaps = 49/361 (13%)

Query: 52  YNSLTGTIPAEIGSLRNLVELDLSNNILNGSIPLEFGNLKDLDALRLRGNKLDGLIPSSI 111
              L+  +P +I S  +   +DLS N L       F N  +L  L L   +++ +   + 
Sbjct: 20  DQKLS-KVPDDIPS--STKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAW 76

Query: 112 GNLTNLTHLDLSLNQLSGRLPQEVGNLKNLLSLFLDNNNLTGPIPSTLYHLNQLSNLYLA 171
             L +L++L L+ N +    P     L +L +L      L       +  L  L  L +A
Sbjct: 77  HGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVA 136

Query: 172 YNNLVG-PLPKEVGNMKNLDSLLLNRNSLTGPIPSTIGYL----NLGGKLDLSHNRLDSP 226
           +N +    LP    N+ NL  + L+ N +     + + +L     +   LD+S N +D  
Sbjct: 137 HNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMSLNPIDF- 195

Query: 227 IPPTIGNLTNLTSLDLSSNQLSGLLPREVG----NLKYLD-------------------- 262
           I         L  L L  N  S  + +        L                        
Sbjct: 196 IQDQAFQGIKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIM 255

Query: 263 ---------SLSLDGNNLIGSIPPTIGYLTNLTSLNLGYNQLSSSIPPELMNCSQLQNLV 313
                       L   N           L N+++++L    +      ++    + Q+L 
Sbjct: 256 EGLCDVTIDEFRLTYTNDFSDDIVKFHCLANVSAMSLAGVSIKY--LEDVPKHFKWQSLS 313

Query: 314 LSHNTLSGIVPPEIGNLTHLRQLDLSHNFINGTIPSQLGYIPNISAVDLSKNNLSGVVPA 373
           +    L         +L  L+ L L+ N   G+I  +   +P++S +DLS+N LS     
Sbjct: 314 IIRCQLKQF---PTLDLPFLKSLTLTMN--KGSISFKKVALPSLSYLDLSRNALSFSGCC 368

Query: 374 S 374
           S
Sbjct: 369 S 369

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score =  157 bits (400), Expect = 5e-43
 Identities = 84/419 (20%), Positives = 139/419 (33%), Gaps = 43/419 (10%)

Query: 9   ELSQLNFTCFPNLESIIIPYTLLSGRIPSEIGALSKLEELALPYNSLTGTIPAEIGSLRN 68
            L   +F+ F  L+ + +    +          L  L  L L  N +    P     L +
Sbjct: 46  ILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTS 105

Query: 69  LVELDLSNNILNGSIPLEFGNLKDLDALRLRGNKLDGL-IPSSIGNLTNLTHLDLSLNQL 127
           L  L      L        G L  L  L +  N +    +P+   NLTNL H+DLS N +
Sbjct: 106 LENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYI 165

Query: 128 SGRLPQEVGNLKNL----LSLFLDNNNLTGPIPSTLYHLNQLSNLYLAYNNLVGPLPKEV 183
                 ++  L+      LSL +  N +   I    +   +L  L L  N     + K  
Sbjct: 166 QTITVNDLQFLRENPQVNLSLDMSLNPIDF-IQDQAFQGIKLHELTLRGNFNSSNIMKTC 224

Query: 184 -GNMKNLDSLLLNRNSLTGPIPSTIGYLNL--------GGKLDLSHNRLDSPIPPTIGNL 234
             N+  L    L            I   ++          +  L++    S        L
Sbjct: 225 LQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVKFHCL 284

Query: 235 TNLTSLDLSSNQLSGLLPR-------------------EVGNLKYLDSLSLDGNNLIGSI 275
            N++++ L+   +  L                         +L +L SL+L  N    SI
Sbjct: 285 ANVSAMSLAGVSIKYLEDVPKHFKWQSLSIIRCQLKQFPTLDLPFLKSLTLTMNKG--SI 342

Query: 276 PPTIGYLTNLTSLNLGYNQLSSSIP--PELMNCSQLQNLVLSHNTLSGIVPPEIGNLTHL 333
                 L +L+ L+L  N LS S       +  + L++L LS N    I+      L  L
Sbjct: 343 SFKKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAI-IMSANFMGLEEL 401

Query: 334 RQLDLSHNFINGTIP-SQLGYIPNISAVDLSKNNLSGVVPASVRIIPKLIV---SENNL 388
           + LD  H+ +      S    +  +  +D+S  N           +  L     + N+ 
Sbjct: 402 QHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSF 460

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score =  157 bits (399), Expect = 8e-43
 Identities = 74/369 (20%), Positives = 129/369 (34%), Gaps = 24/369 (6%)

Query: 18  FPNLESIIIPYTLLSGRIPSEIGALSKLEELALPYNSLTGTIPAEIGSLRNLVELDLSNN 77
             + ++I + +  L           S+L+ L L    +          L +L  L L+ N
Sbjct: 31  PSSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGN 90

Query: 78  ILNGSIPLEFGNLKDLDALRLRGNKLDGLIPSSIGNLTNLTHLDLSLNQLSG-RLPQEVG 136
            +    P  F  L  L+ L     KL  L    IG L  L  L+++ N +   +LP    
Sbjct: 91  PIQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFS 150

Query: 137 NLKNLLSLFLDNNNLTGPIPSTLYHLNQLSN----LYLAYNNLVGPLPKEVGNMKNLDSL 192
           NL NL+ + L  N +     + L  L +       L ++ N +   +  +      L  L
Sbjct: 151 NLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMSLNPIDF-IQDQAFQGIKLHEL 209

Query: 193 LLNRNSLTGPIPSTIG-------YLNLGGKLDLSHNRLDSPIPPTIGNLTNLT--SLDLS 243
            L  N  +  I  T            L          L+   P  +  L ++T     L+
Sbjct: 210 TLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDEFRLT 269

Query: 244 SNQLSGLLPREVGNLKYLDSLSLDGNNLIGSIPPTIGYLTNLTSLNLGYNQLSSSIPPEL 303
                     +   L  + ++SL G ++       +       SL++   QL    P   
Sbjct: 270 YTNDFSDDIVKFHCLANVSAMSLAGVSI--KYLEDVPKHFKWQSLSIIRCQL-KQFPTL- 325

Query: 304 MNCSQLQNLVLSHNTLSGIVPPEIGNLTHLRQLDLSHNFINGTIPS--QLGYIPNISAVD 361
            +   L++L L+ N  S  +  +   L  L  LDLS N ++ +           ++  +D
Sbjct: 326 -DLPFLKSLTLTMNKGS--ISFKKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLD 382

Query: 362 LSKNNLSGV 370
           LS N    +
Sbjct: 383 LSFNGAIIM 391

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score =  141 bits (357), Expect = 5e-37
 Identities = 66/322 (20%), Positives = 116/322 (36%), Gaps = 12/322 (3%)

Query: 3   NNGNAAELSQLNFTCFPNLESIIIPYTLLSGRIPSEIGALSKLEELALPYNSLTGTIPAE 62
            N    E S +   C   ++   + YT        +   L+ +  ++L   S+      +
Sbjct: 245 RNLEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVKFHCLANVSAMSLAGVSIKY--LED 302

Query: 63  IGSLRNLVELDLSNNILNGSIPLEFGNLKDLDALRLRGNKLDGLIPSSIGNLTNLTHLDL 122
           +        L +    L         +L  L +L L  NK    I      L +L++LDL
Sbjct: 303 VPKHFKWQSLSIIRCQLKQ---FPTLDLPFLKSLTLTMNKGS--ISFKKVALPSLSYLDL 357

Query: 123 SLNQLS--GRLPQEVGNLKNLLSLFLDNNNLTGPIPSTLYHLNQLSNLYLAYNNLVGPLP 180
           S N LS  G          +L  L L  N     + +    L +L +L   ++ L     
Sbjct: 358 SRNALSFSGCCSYSDLGTNSLRHLDLSFNGAII-MSANFMGLEELQHLDFQHSTLKRVTE 416

Query: 181 KEV-GNMKNLDSLLLNRNSLTGPIPSTIGYLNLGGKLDLSHNRLDSPIPP-TIGNLTNLT 238
                +++ L  L ++  +           L     L ++ N            N TNLT
Sbjct: 417 FSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLT 476

Query: 239 SLDLSSNQLSGLLPREVGNLKYLDSLSLDGNNLIGSIPPTIGYLTNLTSLNLGYNQLSSS 298
            LDLS  QL  +       L  L  L++  NNL+         L +L++L+  +N++ +S
Sbjct: 477 FLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIETS 536

Query: 299 IPPELMNCSQLQNLVLSHNTLS 320
                     L    L++N+++
Sbjct: 537 KGILQHFPKSLAFFNLTNNSVA 558

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score =  135 bits (341), Expect = 6e-35
 Identities = 66/300 (22%), Positives = 104/300 (34%), Gaps = 12/300 (4%)

Query: 3   NNGNAAELSQLNFTCFPNLESIIIPYTLLSGRIPSEIGALSKLEELALPYNSLTGTIPAE 62
              N      + F C  N+ ++ +    +      ++    K + L++    L       
Sbjct: 269 TYTNDFSDDIVKFHCLANVSAMSLAGVSIKY--LEDVPKHFKWQSLSIIRCQLKQFPTL- 325

Query: 63  IGSLRNLVELDLSNNILNGSIPLEFGNLKDLDALRLRGNKLDGLIPSSIGNL--TNLTHL 120
              L  L  L L+ N   GSI  +   L  L  L L  N L      S  +L   +L HL
Sbjct: 326 --DLPFLKSLTLTMN--KGSISFKKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHL 381

Query: 121 DLSLNQLSGRLPQEVGNLKNLLSLFLDNNNLTGPIP-STLYHLNQLSNLYLAYNNLVGPL 179
           DLS N     +      L+ L  L   ++ L      S    L +L  L ++Y N     
Sbjct: 382 DLSFNGAII-MSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDF 440

Query: 180 PKEVGNMKNLDSLLLNRNSLTGPIPSTIGYLNLG-GKLDLSHNRLDSPIPPTIGNLTNLT 238
                 + +L++L +  NS      S +         LDLS  +L+         L  L 
Sbjct: 441 DGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQ 500

Query: 239 SLDLSSNQLSGLLPREVGNLKYLDSLSLDGNNLIGSIPPTIGYLTNLTSLNLGYNQLSSS 298
            L++S N L  L       L  L +L    N +  S      +  +L   NL  N ++  
Sbjct: 501 LLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIETSKGILQHFPKSLAFFNLTNNSVACI 560

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score =  107 bits (268), Expect = 3e-25
 Identities = 44/193 (22%), Positives = 80/193 (41%), Gaps = 5/193 (2%)

Query: 201 GPIPSTIGYLNLGGKLDLSHNRLDSPIPPTIGNLTNLTSLDLSSNQLSGLLPREVGNLKY 260
           G +   I  +           +L   +P  I   ++  ++DLS N L  L      N   
Sbjct: 2   GSLNPCIEVVP-NITYQCMDQKLSK-VPDDIP--SSTKNIDLSFNPLKILKSYSFSNFSE 57

Query: 261 LDSLSLDGNNLIGSIPPTIGYLTNLTSLNLGYNQLSSSIPPELMNCSQLQNLVLSHNTLS 320
           L  L L    +          L +L++L L  N + S  P      + L+NLV     L+
Sbjct: 58  LQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVETKLA 117

Query: 321 GIVPPEIGNLTHLRQLDLSHNFING-TIPSQLGYIPNISAVDLSKNNLSGVVPASVRIIP 379
            +    IG L  L++L+++HNFI+   +P+    + N+  VDLS N +  +    ++ + 
Sbjct: 118 SLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLR 177

Query: 380 KLIVSENNLELEN 392
           +      +L++  
Sbjct: 178 ENPQVNLSLDMSL 190

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 94.7 bits (236), Expect = 4e-21
 Identities = 36/176 (20%), Positives = 62/176 (35%), Gaps = 2/176 (1%)

Query: 2   DNNGNAAELSQLNFTCFPNLESIIIPYTLLSGRIP-SEIGALSKLEELALPYNSLTGTIP 60
           D + N A +   NF     L+ +   ++ L      S   +L KL  L + Y +      
Sbjct: 382 DLSFNGAIIMSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFD 441

Query: 61  AEIGSLRNLVELDLSNNILNGSIPLE-FGNLKDLDALRLRGNKLDGLIPSSIGNLTNLTH 119
                L +L  L ++ N    +     F N  +L  L L   +L+ +       L  L  
Sbjct: 442 GIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQL 501

Query: 120 LDLSLNQLSGRLPQEVGNLKNLLSLFLDNNNLTGPIPSTLYHLNQLSNLYLAYNNL 175
           L++S N L          L +L +L    N +        +    L+   L  N++
Sbjct: 502 LNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIETSKGILQHFPKSLAFFNLTNNSV 557

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 48.5 bits (116), Expect = 3e-06
 Identities = 22/104 (21%), Positives = 34/104 (32%)

Query: 1   MDNNGNAAELSQLNFTCFPNLESIIIPYTLLSGRIPSEIGALSKLEELALPYNSLTGTIP 60
           M  N          F    NL  + +    L          L +L+ L + +N+L     
Sbjct: 455 MAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDS 514

Query: 61  AEIGSLRNLVELDLSNNILNGSIPLEFGNLKDLDALRLRGNKLD 104
           +    L +L  LD S N +  S  +     K L    L  N + 
Sbjct: 515 SHYNQLYSLSTLDCSFNRIETSKGILQHFPKSLAFFNLTNNSVA 558

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score =  154 bits (390), Expect = 4e-43
 Identities = 66/355 (18%), Positives = 135/355 (38%), Gaps = 15/355 (4%)

Query: 35  IPSEIGALSKLEELALPYNSLTGTIPAEIGSLRNLVELDLSNNILNGSIPLEFGNLKDLD 94
           I S +       ++ +   +       E  +L N   +   N+ +         + + ++
Sbjct: 13  IDSNLQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMRKLPAALLDSFRQVE 72

Query: 95  ALRLRGNKLDGLIPSSIGNLTNLTHLDLSLNQLSGRLPQEVGNLKNLLSLFLDNNNLTGP 154
            L L   +++ +   +      +  L +  N +    P    N+  L  L L+ N+L+  
Sbjct: 73  LLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSL 132

Query: 155 IPSTLYHLNQLSNLYLAYNNLVGPLPKEVGNMKNLDSLLLNRNSLTGPIPSTIGYLNLGG 214
                ++  +L+ L ++ NNL            +L +L L+ N LT    S I  L    
Sbjct: 133 PRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVDLSLIPSLF--- 189

Query: 215 KLDLSHNRLDSPIPPTIGNLTNLTSLDLSSNQLSGLLPREVGNLKYLDSLSLDGNNLIGS 274
             ++S+N L +     +     +  LD S N ++ +          L  L L  NNL   
Sbjct: 190 HANVSYNLLST-----LAIPIAVEELDASHNSINVV---RGPVNVELTILKLQHNNLTD- 240

Query: 275 IPPTIGYLTNLTSLNLGYNQLSSSIPPELMNCSQLQNLVLSHNTLSGIVPPEIGNLTHLR 334
               +     L  ++L YN+L   +    +   +L+ L +S+N L  +       +  L+
Sbjct: 241 -TAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVAL-NLYGQPIPTLK 298

Query: 335 QLDLSHNFINGTIPSQLGYIPNISAVDLSKNNLSGVVPASVRIIPKLIVSENNLE 389
            LDLSHN +   +         +  + L  N++  +  ++   +  L +S N+ +
Sbjct: 299 VLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIVTLKLSTHHTLKNLTLSHNDWD 352

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score =  106 bits (266), Expect = 1e-25
 Identities = 65/293 (22%), Positives = 111/293 (37%), Gaps = 24/293 (8%)

Query: 15  FTCFPNLESIIIPYTLLSGRIPSEI-GALSKLEELALPYNSLTGTIPAEI-GSLRNLVEL 72
           F   P L  +++    LS  +P  I     KL  L++  N+L   I  +   +  +L  L
Sbjct: 113 FQNVPLLTVLVLERNDLS-SLPRGIFHNTPKLTTLSMSNNNLE-RIEDDTFQATTSLQNL 170

Query: 73  DLSNNILNGSIPLEFGNLKDLDALRLRGNKLDGLIPSSIGNLTNLTHLDLSLNQLSGRLP 132
            LS+N L     ++   +  L    +  N L     S++     +  LD S N ++  + 
Sbjct: 171 QLSSNRLTH---VDLSLIPSLFHANVSYNLL-----STLAIPIAVEELDASHNSIN-VVR 221

Query: 133 QEVGNLKNLLSLFLDNNNLTGPIPSTLYHLNQLSNLYLAYNNLVGPLPKEVGNMKNLDSL 192
             V     L  L L +NNLT    + L +   L  + L+YN L   +      M+ L+ L
Sbjct: 222 GPV--NVELTILKLQHNNLTDT--AWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERL 277

Query: 193 LLNRNSLTGPIPSTIGYLNLGGKLDLSHNRLDSPIPPTIGNLTNLTSLDLSSNQLSGLLP 252
            ++ N L   +      +     LDLSHN L   +         L +L L  N +  L  
Sbjct: 278 YISNNRLVA-LNLYGQPIPTLKVLDLSHNHLLH-VERNQPQFDRLENLYLDHNSIVTL-- 333

Query: 253 REVGNLKYLDSLSLDGNNLIGSIPPTIGYLTNLTSLNLGYNQLSSSIPPELMN 305
            ++     L +L+L  N+   +         N+    +        I  +L +
Sbjct: 334 -KLSTHHTLKNLTLSHNDWDCN--SLRALFRNVARPAVDDADQHCKIDYQLEH 383

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 48.9 bits (117), Expect = 1e-06
 Identities = 16/119 (13%), Positives = 40/119 (33%), Gaps = 3/119 (2%)

Query: 274 SIPPTIGYLTNLTSLNLGYNQLSSSIPPELMNCSQLQNLVLSHNTLSGIVPPEIGNLTHL 333
            I   + Y      +++           E +  +  + +   ++T+  +    + +   +
Sbjct: 12  CIDSNLQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMRKLPAALLDSFRQV 71

Query: 334 RQLDLSHNFINGTIPSQLGYIPNISAVDLSKNNLSGVVPASVRIIPKLIV---SENNLE 389
             L+L+   I         Y   I  + +  N +  + P   + +P L V     N+L 
Sbjct: 72  ELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLS 130

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score =  151 bits (384), Expect = 6e-43
 Identities = 58/308 (18%), Positives = 114/308 (37%), Gaps = 16/308 (5%)

Query: 82  SIPLEFGNLKDLDALRLRGNKLDGLIPSSIGNLTNLTHLDLSLNQLSGRLPQEVGNLKNL 141
           +I     N       ++  + L   + S   +  N+  LDLS N LS     ++     L
Sbjct: 1   AIHEIKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKL 60

Query: 142 LSLFLDNNNLTGPIPSTLYHLNQLSNLYLAYNNLVGPLPKEVGNMKNLDSLLLNRNSLTG 201
             L L +N L   +   L  L+ L  L L  N +     +E+    ++++L    N+++ 
Sbjct: 61  ELLNLSSNVLYETLD--LESLSTLRTLDLNNNYV-----QELLVGPSIETLHAANNNISR 113

Query: 202 PIPSTIGYLNLGGKLDLSHNRLDSPIPPTIGNLTNLTSLDLSSNQLSGL-LPREVGNLKY 260
            +  + G       + L++N++        G  + +  LDL  N++  +       +   
Sbjct: 114 -VSCSRG-QGK-KNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDT 170

Query: 261 LDSLSLDGNNLIGSIPPTIGYLTNLTSLNLGYNQLSSSIPPELMNCSQLQNLVLSHNTLS 320
           L+ L+L  N +   +   +     L +L+L  N+L + + PE  + + +  + L +N L 
Sbjct: 171 LEHLNLQYNFIY-DVKGQVV-FAKLKTLDLSSNKL-AFMGPEFQSAAGVTWISLRNNKLV 227

Query: 321 GIVPPEIGNLTHLRQLDLSHNFIN-GTIPSQLGYIPNISAVDLSKNNLSGVVPASVRIIP 379
            I    +    +L   DL  N  + GT+         +  V                 +P
Sbjct: 228 LI-EKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTGQNEEECTVP 286

Query: 380 KLIVSENN 387
            L      
Sbjct: 287 TLGHYGAY 294

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score =  145 bits (367), Expect = 2e-40
 Identities = 62/310 (20%), Positives = 118/310 (38%), Gaps = 24/310 (7%)

Query: 35  IPSEIGALSKLEELALPYNSLTGTIPAEIGSLRNLVELDLSNNILNGSIPLEFGNLKDLD 94
           I       ++ +   +  +SL   + +   S  N+ ELDLS N L+     +      L+
Sbjct: 2   IHEIKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLE 61

Query: 95  ALRLRGNKLDGLIPSSIGNLTNLTHLDLSLNQLSGRLPQEVGNLKNLLSLFLDNNNLTGP 154
            L L  N L       + +L+ L  LDL+ N +      E+    ++ +L   NNN++  
Sbjct: 62  LLNLSSNVLYET--LDLESLSTLRTLDLNNNYVQ-----ELLVGPSIETLHAANNNISR- 113

Query: 155 IPSTLYHLNQLSNLYLAYNNLVGPLPKEVGNMKNLDSLLLNRNSLTG-PIPSTIGYLNLG 213
           +  +        N+YLA N +      + G    +  L L  N +            +  
Sbjct: 114 VSCSR--GQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTL 171

Query: 214 GKLDLSHNRLDSPIPPTIGNLTNLTSLDLSSNQLSGLLPREVGNLKYLDSLSLDGNNLIG 273
             L+L +N +   +   +     L +LDLSSN+L+  +  E  +   +  +SL  N L+ 
Sbjct: 172 EHLNLQYNFIYD-VKGQV-VFAKLKTLDLSSNKLAF-MGPEFQSAAGVTWISLRNNKLV- 227

Query: 274 SIPPTIGYLTNLTSLNLGYNQLSSSIPPELMNCSQLQNLVLSHNTLSGIVPPEIGNLTHL 333
            I   + +  NL   +L  N            C  L++    +  +  +    +  LT  
Sbjct: 228 LIEKALRFSQNLEHFDLRGNGFH---------CGTLRDFFSKNQRVQTVAKQTVKKLTGQ 278

Query: 334 RQLDLSHNFI 343
            + + +   +
Sbjct: 279 NEEECTVPTL 288

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score =  144 bits (366), Expect = 3e-40
 Identities = 57/323 (17%), Positives = 112/323 (34%), Gaps = 16/323 (4%)

Query: 19  PNLESIIIPYTLLSGRIPSEIGALSKLEELALPYNSLTGTIPAEIGSLRNLVELDLSNNI 78
              +   +  + L   + S   +   ++EL L  N L+    A++     L  L+LS+N+
Sbjct: 10  NRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNV 69

Query: 79  LNGSIPLEFGNLKDLDALRLRGNKLDGLIPSSIGNLTNLTHLDLSLNQLSGRLPQEVGNL 138
           L     L+  +L  L  L L  N +       +    ++  L  + N +S R+       
Sbjct: 70  L--YETLDLESLSTLRTLDLNNNYV-----QELLVGPSIETLHAANNNIS-RVS--CSRG 119

Query: 139 KNLLSLFLDNNNLTGPIPSTLYHLNQLSNLYLAYNNLVG-PLPKEVGNMKNLDSLLLNRN 197
           +   +++L NN +T          +++  L L  N +      +   +   L+ L L  N
Sbjct: 120 QGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYN 179

Query: 198 SLTGPIPSTIGYLNLGGKLDLSHNRLDSPIPPTIGNLTNLTSLDLSSNQLSGLLPREVGN 257
            +   +   + +  L   LDLS N+L   + P   +   +T + L +N+L   + + +  
Sbjct: 180 FIYD-VKGQVVFAKL-KTLDLSSNKLAF-MGPEFQSAAGVTWISLRNNKLVL-IEKALRF 235

Query: 258 LKYLDSLSLDGNNLIGSIPPTIGYLTNLTSLNLGYNQLSSSIPPELMNCSQLQNLVLSHN 317
            + L+   L GN           +  N     +    +          C+          
Sbjct: 236 SQNLEHFDLRGNGFH-CGTLRDFFSKNQRVQTVAKQTVKKLTGQNEEECTVPTLGHYGAY 294

Query: 318 TLSGIVPPEIGNLTHLRQLDLSH 340
               +  P    L  L      H
Sbjct: 295 CCEDLPAPFADRLIALGHHHHHH 317

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 83.1 bits (206), Expect = 5e-18
 Identities = 30/166 (18%), Positives = 57/166 (34%), Gaps = 13/166 (7%)

Query: 227 IPPTIGNLTNLTSLDLSSNQLSGLLPREVGNLKYLDSLSLDGNNLIGSIPPTIGYLTNLT 286
           I     N        ++ + L   L     +   +  L L GN L       +   T L 
Sbjct: 2   IHEIKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLE 61

Query: 287 SLNLGYNQLSSSIPPELMNCSQLQNLVLSHNTLSGIVPPEIGNLTHLRQLDLSHNFINGT 346
            LNL  N L      +L + S L+ L L++N +      E+     +  L  ++N I+  
Sbjct: 62  LLNLSSNVLYE--TLDLESLSTLRTLDLNNNYVQ-----ELLVGPSIETLHAANNNIS-R 113

Query: 347 IPSQLGYIPNISAVDLSKNNLSGVVPASVRIIPKLIV---SENNLE 389
           +    G       + L+ N ++ +         ++       N ++
Sbjct: 114 VSCSRG--QGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEID 157

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 79.6 bits (197), Expect = 9e-17
 Identities = 29/185 (15%), Positives = 64/185 (34%), Gaps = 6/185 (3%)

Query: 10  LSQLNFTCFPNLESIIIPYTLLSGRIPSEIGALSKLEELALPYNSLTG-TIPAEIGSLRN 68
           +S+++ +     ++I +    ++     + G  S+++ L L  N +          S   
Sbjct: 111 ISRVSCSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDT 170

Query: 69  LVELDLSNNILNGSIPLEFGNLKDLDALRLRGNKLDGLIPSSIGNLTNLTHLDLSLNQLS 128
           L  L+L  N +   +  +      L  L L  NKL   +     +   +T + L  N+L 
Sbjct: 171 LEHLNLQYNFIY-DVKGQV-VFAKLKTLDLSSNKLAF-MGPEFQSAAGVTWISLRNNKLV 227

Query: 129 GRLPQEVGNLKNLLSLFLDNNNLT-GPIPSTLYHLNQLSNLYLAYNNLVGPLPKEVGNMK 187
             + + +   +NL    L  N    G +        ++  +       +    +E   + 
Sbjct: 228 -LIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTGQNEEECTVP 286

Query: 188 NLDSL 192
            L   
Sbjct: 287 TLGHY 291

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score =  155 bits (393), Expect = 9e-43
 Identities = 84/313 (26%), Positives = 135/313 (43%), Gaps = 6/313 (1%)

Query: 34  RIPSEIGALSKLEELALPYNSLTGTIPAEIGSLRNLVELDLSNNILNGSIPLEFGNLKDL 93
            +P  I   ++   L L  N +      E  S  +L EL+L+ NI++   P  F NL +L
Sbjct: 25  AVPEGI--PTETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNL 82

Query: 94  DALRLRGNKLDGLIPSSIGNLTNLTHLDLSLNQLSGRLPQEVGNLKNLLSLFLDNNNLTG 153
             L LR N+L  +       L+NLT LD+S N++   L     +L NL SL + +N+L  
Sbjct: 83  RTLGLRSNRLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVY 142

Query: 154 PIPSTLYHLNQLSNLYLAYNNLVGPLPKEVGNMKNLDSLLLNRNSLTGPIPSTIGYLNLG 213
                   LN L  L L   NL     + + ++  L  L L   ++      +   L   
Sbjct: 143 ISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRL 202

Query: 214 GKLDLSHNRLDSPIPPTIGNLTNLTSLDLSSNQLSGLLPREVGNLKYLDSLSLDGNNLIG 273
             L++SH      + P      NLTSL ++   L+ +    V +L YL  L+L  N  I 
Sbjct: 203 KVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNP-IS 261

Query: 274 SIPPTI-GYLTNLTSLNLGYNQLSSSIPPE-LMNCSQLQNLVLSHNTLSGIVPPEIGNLT 331
           +I  ++   L  L  + L   QL+  + P      + L+ L +S N L+ +      ++ 
Sbjct: 262 TIEGSMLHELLRLQEIQLVGGQLAV-VEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSVG 320

Query: 332 HLRQLDLSHNFIN 344
           +L  L L  N + 
Sbjct: 321 NLETLILDSNPLA 333

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score =  151 bits (382), Expect = 3e-41
 Identities = 67/291 (23%), Positives = 120/291 (41%), Gaps = 2/291 (0%)

Query: 92  DLDALRLRGNKLDGLIPSSIGNLTNLTHLDLSLNQLSGRLPQEVGNLKNLLSLFLDNNNL 151
           +   L L  N++  L      +  +L  L+L+ N +S   P    NL NL +L L +N L
Sbjct: 33  ETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRL 92

Query: 152 TGPIPSTLYHLNQLSNLYLAYNNLVGPLPKEVGNMKNLDSLLLNRNSLTGPIPSTIGYLN 211
                     L+ L+ L ++ N +V  L     ++ NL SL +  N L          LN
Sbjct: 93  KLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLN 152

Query: 212 LGGKLDLSHNRLDSPIPPTIGNLTNLTSLDLSSNQLSGLLPREVGNLKYLDSLSLDGNNL 271
              +L L    L S     + +L  L  L L    ++ +       L  L  L +     
Sbjct: 153 SLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPY 212

Query: 272 IGSIPPTIGYLTNLTSLNLGYNQLSSSIPPE-LMNCSQLQNLVLSHNTLSGIVPPEIGNL 330
           + ++ P   Y  NLTSL++ +  L +++P   + +   L+ L LS+N +S I    +  L
Sbjct: 213 LDTMTPNCLYGLNLTSLSITHCNL-TAVPYLAVRHLVYLRFLNLSYNPISTIEGSMLHEL 271

Query: 331 THLRQLDLSHNFINGTIPSQLGYIPNISAVDLSKNNLSGVVPASVRIIPKL 381
             L+++ L    +    P     +  +  +++S N L+ +  +    +  L
Sbjct: 272 LRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSVGNL 322

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score =  118 bits (297), Expect = 2e-29
 Identities = 69/289 (23%), Positives = 115/289 (39%), Gaps = 26/289 (8%)

Query: 9   ELSQLNFTCFPNLESIIIPYTLLSGRIPSEIGALSKLEELALPYNSLTGTIPAEI-GSLR 67
            L+Q  F  FP+LE + +   ++S   P     L  L  L L  N L   IP  +   L 
Sbjct: 46  TLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLK-LIPLGVFTGLS 104

Query: 68  NLVELDLSNNILNGSIPLEFGNLKDLDALRLRGNKLDGLIPSSIGNLTNLTHLDLSLNQL 127
           NL +LD+S N +   +   F +L +L +L +  N L  +   +   L +L  L L    L
Sbjct: 105 NLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNL 164

Query: 128 SGRLPQEVGNLKNLLSLFLDNNNLTGPIPSTLYHLNQLSNLYLAYNNLVGPLPKEVGNMK 187
           +    + + +L  L+ L L + N+      +   L +L  L +++   +  +        
Sbjct: 165 TSIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGL 224

Query: 188 NLDSLLLNRNSLTGPIPSTIG------YLNLGG------------------KLDLSHNRL 223
           NL SL +   +LT      +       +LNL                    ++ L   +L
Sbjct: 225 NLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQL 284

Query: 224 DSPIPPTIGNLTNLTSLDLSSNQLSGLLPREVGNLKYLDSLSLDGNNLI 272
               P     L  L  L++S NQL+ L      ++  L++L LD N L 
Sbjct: 285 AVVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSVGNLETLILDSNPLA 333

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score =  151 bits (382), Expect = 4e-40
 Identities = 99/404 (24%), Positives = 148/404 (36%), Gaps = 39/404 (9%)

Query: 15  FTCFPNLESIIIPYTLLSGRIPSEIGALSKLEELALPYNSLTGTIPAEI-GSLRNLVELD 73
                  E +++ +  +     S    L +L+ L L       TI  E   +L NL  LD
Sbjct: 20  PQVLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILD 79

Query: 74  LSNNILNGSIPLEFGNLKDLDALRLRGNKL--DGLIPSSIGNLTNLTHLDLSLNQLSG-R 130
           L ++ +    P  F  L  L  LRL    L    L      NL  LT LDLS NQ+    
Sbjct: 80  LGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLY 139

Query: 131 LPQEVGNLKNLLSLFLDNNNLTGPIPSTLYHLNQ--LSNLYLAYNNLVGPLPKEVGNMKN 188
           L    G L +L S+   +N +       L  L    LS   LA N+L   +  + G   N
Sbjct: 140 LHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMN 199

Query: 189 ------LDSLLLNRNSLTGPIPST------------IGYLNLGGKLDLSHNRLDSPIPPT 230
                 L+ L ++ N  T  I               +   +         + +  P   T
Sbjct: 200 PFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNT 259

Query: 231 IGNL--TNLTSLDLSSNQLSGLLPREVGNLKYLDSLSLDGNNLIGSIPPTIGYLTNLTSL 288
              L  +++  LDLS   +  L  R    LK L  L+L  N +          L NL  L
Sbjct: 260 FAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVL 319

Query: 289 NLGYNQLSSSIPPELMNCSQLQNLVLSHNTLSGIVPPEIGNLTHLRQLDLSHNFINGTIP 348
           NL YN L            ++  + L  N ++ I       L  L+ LDL  N +     
Sbjct: 320 NLSYNLLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNAL----- 374

Query: 349 SQLGYIPNISAVDLSKNNLSGVVPASVRIIPKLIVSENNLELEN 392
           + + +IP+I  + LS N L          +PK+ ++ N + L  
Sbjct: 375 TTIHFIPSIPDIFLSGNKLV--------TLPKINLTANLIHLSE 410

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score =  142 bits (360), Expect = 4e-37
 Identities = 78/374 (20%), Positives = 138/374 (36%), Gaps = 33/374 (8%)

Query: 52  YNSLTGTIPAEIGSLRNLVELDLSNNILNGSIPLEFGNLKDLDALRLRGNKLDGLI-PSS 110
           + +LT  +P     L     L LS N +       F  L+ L  L L        I   +
Sbjct: 13  FCNLT-QVPQ---VLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEA 68

Query: 111 IGNLTNLTHLDLSLNQLSGRLPQEVGNLKNLLSLFLDNNNLTGPI--PSTLYHLNQLSNL 168
             NL NL  LDL  +++    P     L +L  L L    L+  +       +L  L+ L
Sbjct: 69  FRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRL 128

Query: 169 YLAYNNLVG-PLPKEVGNMKNLDSLLLNRNSLTGPIPSTIGYLNLGG--KLDLSHNRLDS 225
            L+ N +    L    G + +L S+  + N +       +  L         L+ N L S
Sbjct: 129 DLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAANSLYS 188

Query: 226 PIPPTIGNLTN------LTSLDLSSNQLSGLLPREVGN------------LKYLDSLSLD 267
            +    G   N      L  LD+S N  +  +     N              ++      
Sbjct: 189 RVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFG 248

Query: 268 GNNLIGSIPPTIGYL--TNLTSLNLGYNQLSSSIPPELMNCSQLQNLVLSHNTLSGIVPP 325
            +N+      T   L  +++  L+L +  + S           L+ L L++N ++ I   
Sbjct: 249 FHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADE 308

Query: 326 EIGNLTHLRQLDLSHNFINGTIPSQLGYIPNISAVDLSKNNLSGVVPASVRIIPKLIV-- 383
               L +L+ L+LS+N +     S    +P ++ +DL KN+++ +   + + + KL    
Sbjct: 309 AFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLD 368

Query: 384 -SENNLELENSTSS 396
             +N L   +   S
Sbjct: 369 LRDNALTTIHFIPS 382

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score =  137 bits (347), Expect = 2e-35
 Identities = 84/369 (22%), Positives = 138/369 (37%), Gaps = 44/369 (11%)

Query: 29  TLLSGRIPSEIGALSKLEELALPYNSLTGTIPAEIGSLR--NLVELDLSNNILNGSIPLE 86
             +S      +     +      ++++          L   ++  LDLS+  +       
Sbjct: 226 NAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRV 285

Query: 87  FGNLKDLDALRLRGNKLDGLIPSSIGNLTNLTHLDLSLNQLSGRLPQEVGNLKNLLSLFL 146
           F  LKDL  L L  NK++ +   +   L NL  L+LS N L          L  +  + L
Sbjct: 286 FETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDL 345

Query: 147 DNNNLTGPIPSTLYHLNQLSNLYLAYNNLVGPLPKEVGNMKNLDSLLLNRNSLTGPIPST 206
             N++      T   L +L  L L  N L       +  + ++  + L+ N L      T
Sbjct: 346 QKNHIAIIQDQTFKFLEKLQTLDLRDNAL-----TTIHFIPSIPDIFLSGNKLV-----T 395

Query: 207 IGYLNLGGK-LDLSHNRLDS-PIPPTIGNLTNLTSLDLSSNQLSGLLPREVGNLKYLDSL 264
           +  +NL    + LS NRL++  I   +  + +L  L L+ N+ S     +          
Sbjct: 396 LPKINLTANLIHLSENRLENLDILYFLLRVPHLQILILNQNRFSSCSGDQ---------- 445

Query: 265 SLDGNNLIGSIPPTIGYLTNLTSLNLGYNQLSSSIPPEL-----MNCSQLQNLVLSHNTL 319
                        T     +L  L LG N L  +   EL        S LQ L L+HN L
Sbjct: 446 -------------TPSENPSLEQLFLGENMLQLAWETELCWDVFEGLSHLQVLYLNHNYL 492

Query: 320 SGIVPPEIGNLTHLRQLDLSHNFINGTIPSQLGYIPNISAVDLSKNNLSGVVPASVRIIP 379
           + + P    +LT LR L L+ N +     + L    N+  +D+S+N L    P     + 
Sbjct: 493 NSLPPGVFSHLTALRGLSLNSNRLTVLSHNDL--PANLEILDISRNQLLAPNPDVFVSLS 550

Query: 380 KLIVSENNL 388
            L ++ N  
Sbjct: 551 VLDITHNKF 559

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score =  123 bits (311), Expect = 9e-31
 Identities = 67/337 (19%), Positives = 122/337 (36%), Gaps = 32/337 (9%)

Query: 72  LDLSNNILNGSIPLEFGNLKDLDALRLRGNKLDGLIPSSIGNLTNLTHLDLSLNQLSGRL 131
                  L   +P      + L    L  N +  +  SS   L  L  L+L        +
Sbjct: 9   AFYRFCNLT-QVPQVLNTTERLL---LSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTI 64

Query: 132 PQEV-GNLKNLLSLFLDNNNLTGPIPSTLYHLNQLSNLYLAYNNL--VGPLPKEVGNMKN 188
            +E   NL NL  L L ++ +    P     L  L  L L +  L           N+K 
Sbjct: 65  DKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKA 124

Query: 189 LDSLLLNRNSLTG-PIPSTIGYLNLGGKLDLSHNRLDSPIPPTIGNLT--NLTSLDLSSN 245
           L  L L++N +    +  + G LN    +D S N++       +  L    L+   L++N
Sbjct: 125 LTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAAN 184

Query: 246 QLSGLLPREVGNL------KYLDSLSLDGN------------NLIGSIPPTIGYLTNLTS 287
            L   +  + G          L+ L + GN             +  S   ++    ++  
Sbjct: 185 SLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMG 244

Query: 288 LNLGYNQLSSSIPPEL---MNCSQLQNLVLSHNTLSGIVPPEIGNLTHLRQLDLSHNFIN 344
              G++ +           +  S +++L LSH  +  +       L  L+ L+L++N IN
Sbjct: 245 AGFGFHNI-KDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKIN 303

Query: 345 GTIPSQLGYIPNISAVDLSKNNLSGVVPASVRIIPKL 381
                    + N+  ++LS N L  +  ++   +PK+
Sbjct: 304 KIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKV 340

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 89.5 bits (222), Expect = 2e-19
 Identities = 43/190 (22%), Positives = 67/190 (35%), Gaps = 8/190 (4%)

Query: 213 GGKLDLSHNRLDSPIPPTIGNLTNLTSLDLSSNQLSGLLPREVGNLKYLDSLSLDGNNLI 272
           G         L   +P     L     L LS N +  +       L+ L  L L      
Sbjct: 6   GRIAFYRFCNLTQ-VPQ---VLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTP 61

Query: 273 GSIPP-TIGYLTNLTSLNLGYNQLSSSIPPELMNCSQLQNLVLSHNTLSGIVPPE--IGN 329
            +I       L NL  L+LG +++    P        L  L L    LS  V  +    N
Sbjct: 62  LTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRN 121

Query: 330 LTHLRQLDLSHNFING-TIPSQLGYIPNISAVDLSKNNLSGVVPASVRIIPKLIVSENNL 388
           L  L +LDLS N I    +    G + ++ ++D S N +  V    +  +    +S  +L
Sbjct: 122 LKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSL 181

Query: 389 ELENSTSSEN 398
              +  S  +
Sbjct: 182 AANSLYSRVS 191

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score =  149 bits (378), Expect = 6e-40
 Identities = 77/318 (24%), Positives = 124/318 (38%), Gaps = 43/318 (13%)

Query: 34  RIPSEIGALSKLEELALPYNSLTGTIPAEIGSLRNLVELDLSNNILNGSIPLEFGNLKDL 93
            +P  +   + +  L +P N+LT ++PA       L  L++S N L  S+P+    L +L
Sbjct: 54  TLPDCLP--AHITTLVIPDNNLT-SLPALPP---ELRTLEVSGNQLT-SLPVLPPGLLEL 106

Query: 94  DALRLRGNKLDGLIPSSIGNLTNLTHLDLSLNQLSGRLPQEVGNLKNLLSLFLDNNNLTG 153
                    L  L        + L  L +  NQL+  LP     L+    L + +N L  
Sbjct: 107 SIFSNPLTHLPAL-------PSGLCKLWIFGNQLT-SLPVLPPGLQ---ELSVSDNQLAS 155

Query: 154 PIPSTLYHLNQLSNLYLAYNNLVGPLPKEVGNMKNLDSLLLNRNSLTGPIPSTIGYLNLG 213
            +P+     ++L  L+   N L   LP     ++ L    ++ N L   +P+    L   
Sbjct: 156 -LPALP---SELCKLWAYNNQLTS-LPMLPSGLQELS---VSDNQLAS-LPTLPSELY-- 204

Query: 214 GKLDLSHNRLDSPIPPTIGNLTNLTSLDLSSNQLSGLLPREVGNLKYLDSLSLDGNNLIG 273
            KL   +NRL S +P     L     L +S N+L+ L P     LK L        N + 
Sbjct: 205 -KLWAYNNRLTS-LPALPSGLK---ELIVSGNRLTSL-PVLPSELKELMV----SGNRLT 254

Query: 274 SIPPTIGYLTNLTSLNLGYNQLSSSIPPELMNCSQLQNLVLSHNTLSGIVPPEIGNLTHL 333
           S+P        L SL++  NQL+  +P  L++ S    + L  N LS      +  +T  
Sbjct: 255 SLPMLPS---GLLSLSVYRNQLTR-LPESLIHLSSETTVNLEGNPLSERTLQALREITSA 310

Query: 334 RQLDLSHNFINGTIPSQL 351
                     +    S  
Sbjct: 311 PGYSGPIIRFDMAGASAP 328

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score =  132 bits (333), Expect = 7e-34
 Identities = 75/339 (22%), Positives = 121/339 (35%), Gaps = 54/339 (15%)

Query: 67  RNLVELDLSNNILNGSIPLEFGNLKDLDALRLRGNKLDGLIPSSIGNLTNLTHLDLSLNQ 126
           R     + S         +          L +  + L  L P  +    ++T L +  N 
Sbjct: 16  RRAAPAEESRGRAAVVQKMRACLNNGNAVLNVGESGLTTL-PDCLP--AHITTLVIPDNN 72

Query: 127 LSGRLPQEVGNLKNLLSLFLDNNNLTGPIPSTLYHLNQLSNLYLAYNNLVGPLPKEVGNM 186
           L+  LP     L+    L +  N LT  +P     L +LS       +L           
Sbjct: 73  LT-SLPALPPELRT---LEVSGNQLTS-LPVLPPGLLELSIFSNPLTHLPALPS------ 121

Query: 187 KNLDSLLLNRNSLTGPIPSTIGYLNLGGKLDLSHNRLDSPIPPTIGNLT----------- 235
             L  L +  N LT  +P     L    +L +S N+L S +P     L            
Sbjct: 122 -GLCKLWIFGNQLTS-LPVLPPGLQ---ELSVSDNQLAS-LPALPSELCKLWAYNNQLTS 175

Query: 236 ------NLTSLDLSSNQLSGLLPREVGNLKYLDSLSLDGNNLIGSIPPTIGYLTNLTSLN 289
                  L  L +S NQL+  LP     L  L +     NN + S+P        L  L 
Sbjct: 176 LPMLPSGLQELSVSDNQLAS-LPTLPSELYKLWAY----NNRLTSLPALPS---GLKELI 227

Query: 290 LGYNQLSSSIPPELMNCSQLQNLVLSHNTLSGIVPPEIGNLTHLRQLDLSHNFINGTIPS 349
           +  N+L +S+P      S+L+ L++S N L+ + P     L     L +  N +   +P 
Sbjct: 228 VSGNRL-TSLPVLP---SELKELMVSGNRLTSL-PMLPSGLLS---LSVYRNQLT-RLPE 278

Query: 350 QLGYIPNISAVDLSKNNLSGVVPASVRIIPKLIVSENNL 388
            L ++ + + V+L  N LS     ++R I         +
Sbjct: 279 SLIHLSSETTVNLEGNPLSERTLQALREITSAPGYSGPI 317

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 80.7 bits (199), Expect = 1e-16
 Identities = 46/193 (23%), Positives = 79/193 (40%), Gaps = 20/193 (10%)

Query: 18  FPNLESIIIPYTLLSGRIPSEIGALSKLEELALPYNSLTGTIPAEIGSLRNLVELDLSNN 77
              L+ + +    L+  +P+    L KL       N LT ++PA    L+   EL +S N
Sbjct: 180 PSGLQELSVSDNQLA-SLPTLPSELYKLWAY---NNRLT-SLPALPSGLK---ELIVSGN 231

Query: 78  ILNGSIPLEFGNLKDLDALRLRGNKLDGLIPSSIGNLTNLTHLDLSLNQLSGRLPQEVGN 137
            L  S+P+    LK+L    + GN+L  L P     L     L +  NQL+ RLP+ + +
Sbjct: 232 RLT-SLPVLPSELKELM---VSGNRLTSL-PMLPSGLL---SLSVYRNQLT-RLPESLIH 282

Query: 138 LKNLLSLFLDNNNLTGPIPSTLYHLNQL---SNLYLAYNNLVGPLPKEVGNMKNLDSLLL 194
           L +  ++ L+ N L+      L  +      S   + ++      P+E   +    +  L
Sbjct: 283 LSSETTVNLEGNPLSERTLQALREITSAPGYSGPIIRFDMAGASAPRETRALHLAAADWL 342

Query: 195 NRNSLTGPIPSTI 207
                  P P+  
Sbjct: 343 VPAREGEPAPADR 355

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 61.4 bits (149), Expect = 2e-10
 Identities = 32/178 (17%), Positives = 59/178 (33%), Gaps = 20/178 (11%)

Query: 9   ELSQLNFTCFP----NLESIIIPYTLLSGRIPSEIGALSKLEELALPYNSLTGTIPAEIG 64
                  T  P     L+ +I+    L+  +P       +L+EL +  N LT ++P    
Sbjct: 207 WAYNNRLTSLPALPSGLKELIVSGNRLT-SLPVLPS---ELKELMVSGNRLT-SLPMLPS 261

Query: 65  SLRNLVELDLSNNILNGSIPLEFGNLKDLDALRLRGNKLDGLIPSSIGNLTNLTHLDLSL 124
               L+ L +  N L   +P    +L     + L GN L      ++  +T+       +
Sbjct: 262 ---GLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTLQALREITSAPGYSGPI 317

Query: 125 NQ---LSGRLPQEVGNLKNLLSLFLDNNNLTGPIPST----LYHLNQLSNLYLAYNNL 175
            +        P+E   L    + +L       P P+         +      L  + L
Sbjct: 318 IRFDMAGASAPRETRALHLAAADWLVPAREGEPAPADRWHMFGQEDNADAFSLFLDRL 375

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score =  147 bits (373), Expect = 6e-40
 Identities = 63/356 (17%), Positives = 123/356 (34%), Gaps = 19/356 (5%)

Query: 35  IPSEIGALSKLEELALPYNSLTGTIPAEIGSLRNLVELDLSNNILNGSIPLEFGNLKDLD 94
           I       ++ +   +  +SL   + +   S  N+ ELDLS N L+     +      L+
Sbjct: 2   IHEIKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLE 61

Query: 95  ALRLRGNKLDGLIPSSIGNLTNLTHLDLSLNQLSGRLPQEVGNLKNLLSLFLDNNNLTGP 154
            L L  N L       + +L+ L  LDL+ N +      E+    ++ +L   NNN++  
Sbjct: 62  LLNLSSNVLYET--LDLESLSTLRTLDLNNNYVQ-----ELLVGPSIETLHAANNNISRV 114

Query: 155 IPSTLYHLNQLSNLYLAYNNLVGPLPKEVGNMKNLDSLLLNRNSLTG-PIPSTIGYLNLG 213
             S         N+YLA N +      + G    +  L L  N +            +  
Sbjct: 115 SCSR---GQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTL 171

Query: 214 GKLDLSHNRLDSPIPPTIGNLTNLTSLDLSSNQLSGLLPREVGNLKYLDSLSLDGNNLIG 273
             L+L +N +   +   +     L +LDLSSN+L+  +  E  +   +  +SL  N L+ 
Sbjct: 172 EHLNLQYNFIYD-VKGQV-VFAKLKTLDLSSNKLAF-MGPEFQSAAGVTWISLRNNKLV- 227

Query: 274 SIPPTIGYLTNLTSLNLGYNQLSSSIPPELMNCSQLQNLVLSHNTLSGIVPPEIGNLTHL 333
            I   + +  NL   +L  N        +  +    +   ++  T+  +        T  
Sbjct: 228 LIEKALRFSQNLEHFDLRGNGFHCGTLRDFFS-KNQRVQTVAKQTVKKLTGQNEEECTVP 286

Query: 334 RQLDLSHNFINGTIPSQLGYIPNISAVDLSKNNLSGVVPASVRIIPKLIVSENNLE 389
                              +   + A+   ++ L     +    +     ++    
Sbjct: 287 TLGHYGAYCCE---DLPAPFADRLIALKRKEHALLSGQGSETERLECERENQARQR 339

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score =  147 bits (372), Expect = 8e-40
 Identities = 60/369 (16%), Positives = 124/369 (33%), Gaps = 20/369 (5%)

Query: 19  PNLESIIIPYTLLSGRIPSEIGALSKLEELALPYNSLTGTIPAEIGSLRNLVELDLSNNI 78
              +   +  + L   + S   +   ++EL L  N L+    A++     L  L+LS+N+
Sbjct: 10  NRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNV 69

Query: 79  LNGSIPLEFGNLKDLDALRLRGNKLDGLIPSSIGNLTNLTHLDLSLNQLSGRLPQEVGNL 138
           L  ++     +L  L  L L  N +       +    ++  L  + N +S R+       
Sbjct: 70  LYETLD--LESLSTLRTLDLNNNYV-----QELLVGPSIETLHAANNNIS-RVS--CSRG 119

Query: 139 KNLLSLFLDNNNLTGPIPSTLYHLNQLSNLYLAYNNLVG-PLPKEVGNMKNLDSLLLNRN 197
           +   +++L NN +T          +++  L L  N +      +   +   L+ L L  N
Sbjct: 120 QGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYN 179

Query: 198 SLTGPIPSTIGYLNLGGKLDLSHNRLDSPIPPTIGNLTNLTSLDLSSNQLSGLLPREVGN 257
            +   +   + +  L   LDLS N+L   + P   +   +T + L +N+L   + + +  
Sbjct: 180 FIYD-VKGQVVFAKL-KTLDLSSNKLAF-MGPEFQSAAGVTWISLRNNKLVL-IEKALRF 235

Query: 258 LKYLDSLSLDGNNLIGSIPPTIGYLTNLTSLNLGYNQLSSSIPPELMNCSQLQNLVLSHN 317
            + L+   L GN           +  N     +    +          C+          
Sbjct: 236 SQNLEHFDLRGNGFH-CGTLRDFFSKNQRVQTVAKQTVKKLTGQNEEECTVPTLGHYGAY 294

Query: 318 TLSGIVPPEIGNLTHLRQLDLSHNFING----TIPSQLGYIPNISAVDLSKNNLSGVVPA 373
               +  P    L  L++ + +     G     +  +         +D  K     V+  
Sbjct: 295 CCEDLPAPFADRLIALKRKEHALLSGQGSETERLECERENQARQREIDALKEQYRTVIDQ 354

Query: 374 SVRIIPKLI 382
                   I
Sbjct: 355 VTLRKQAKI 363

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score =  142 bits (359), Expect = 5e-38
 Identities = 56/340 (16%), Positives = 112/340 (32%), Gaps = 16/340 (4%)

Query: 63  IGSLRNLVELDLSNNILNGSIPLEFGNLKDLDALRLRGNKLDGLIPSSIGNLTNLTHLDL 122
             +        ++++ L  ++     +  ++  L L GN L  +  + +   T L  L+L
Sbjct: 6   KQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNL 65

Query: 123 SLNQLSGRLPQEVGNLKNLLSLFLDNNNLTGPIPSTLYHLNQLSNLYLAYNNLVGPLPKE 182
           S N L      ++ +L  L +L L+NN +       L     +  L+ A NN+   +   
Sbjct: 66  SSNVLYE--TLDLESLSTLRTLDLNNNYVQ-----ELLVGPSIETLHAANNNISR-VSCS 117

Query: 183 VGNMKNLDSLLLNRNSLTGPIPSTIGYLNLGGKLDLSHNRLDS-PIPPTIGNLTNLTSLD 241
               +   ++ L  N +T       G  +    LDL  N +D+        +   L  L+
Sbjct: 118 --RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLN 175

Query: 242 LSSNQLSGLLPREVGNLKYLDSLSLDGNNLIGSIPPTIGYLTNLTSLNLGYNQLSSSIPP 301
           L  N +  +  +       L +L L  N  +  + P       +T ++L  N+L   I  
Sbjct: 176 LQYNFIYDVKGQV--VFAKLKTLDLSSNK-LAFMGPEFQSAAGVTWISLRNNKL-VLIEK 231

Query: 302 ELMNCSQLQNLVLSHNTLSGIVPPEIGNLTHLRQLDLSHNFINGTIPSQLGYIPNISAVD 361
            L     L++  L  N        +     + R   ++   +              +   
Sbjct: 232 ALRFSQNLEHFDLRGNGFHCGTLRDF-FSKNQRVQTVAKQTVKKLTGQNEEECTVPTLGH 290

Query: 362 LSKNNLSGVVPASVRIIPKLIVSENNLELENSTSSENAPP 401
                   +       +  L   E+ L     + +E    
Sbjct: 291 YGAYCCEDLPAPFADRLIALKRKEHALLSGQGSETERLEC 330

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score =  141 bits (356), Expect = 1e-37
 Identities = 53/271 (19%), Positives = 104/271 (38%), Gaps = 15/271 (5%)

Query: 82  SIPLEFGNLKDLDALRLRGNKLDGLIPSSIGNLTNLTHLDLSLNQLSGRLPQEVGNLKNL 141
           +I     N       ++  + L   + S   +  N+  LDLS N LS     ++     L
Sbjct: 1   AIHEIKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKL 60

Query: 142 LSLFLDNNNLTGPIPSTLYHLNQLSNLYLAYNNLVGPLPKEVGNMKNLDSLLLNRNSLTG 201
             L L +N L   +   L  L+ L  L L  N +     +E+    ++++L    N+++ 
Sbjct: 61  ELLNLSSNVLYETLD--LESLSTLRTLDLNNNYV-----QELLVGPSIETLHAANNNISR 113

Query: 202 PIPSTIGYLNLGGKLDLSHNRLDSPIPPTIGNLTNLTSLDLSSNQLSGL-LPREVGNLKY 260
              S          + L++N++        G  + +  LDL  N++  +       +   
Sbjct: 114 VSCSRGQGKK---NIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDT 170

Query: 261 LDSLSLDGNNLIGSIPPTIGYLTNLTSLNLGYNQLSSSIPPELMNCSQLQNLVLSHNTLS 320
           L+ L+L  N +   +   +     L +L+L  N+L + + PE  + + +  + L +N L 
Sbjct: 171 LEHLNLQYNFIY-DVKGQV-VFAKLKTLDLSSNKL-AFMGPEFQSAAGVTWISLRNNKLV 227

Query: 321 GIVPPEIGNLTHLRQLDLSHNFINGTIPSQL 351
            I    +    +L   DL  N  +       
Sbjct: 228 LI-EKALRFSQNLEHFDLRGNGFHCGTLRDF 257

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score =  126 bits (319), Expect = 2e-32
 Identities = 54/374 (14%), Positives = 105/374 (28%), Gaps = 28/374 (7%)

Query: 15  FTCFPNLESIIIPYTLLSGRIPSEIGALSKLEELALPYNSLTGTIPAEIGSLRNLVELDL 74
                N++ + +    LS    +++   +KLE L L  N L      ++ SL  L  LDL
Sbjct: 30  RQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYE--TLDLESLSTLRTLDL 87

Query: 75  SNNIL----------------NGSIPLEFGNLKDLDALRLRGNKLDGLIPSSIGNLTNLT 118
           +NN +                N    +     +    + L  NK+  L     G  + + 
Sbjct: 88  NNNYVQELLVGPSIETLHAANNNISRVSCSRGQGKKNIYLANNKITMLRDLDEGCRSRVQ 147

Query: 119 HLDLSLNQLSG-RLPQEVGNLKNLLSLFLDNNNLTGPIPSTLYHLNQLSNLYLAYNNLVG 177
           +LDL LN++      +   +   L  L L  N +   +   +    +L  L L+ N L  
Sbjct: 148 YLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYD-VKGQVV-FAKLKTLDLSSNKLAF 205

Query: 178 PLPKEVGNMKNLDSLLLNRNSLTGPIPSTIGYLNLGGKLDLSHNRLDSPIPPTIGNLTNL 237
            +  E  +   +  + L  N L   I   + +       DL  N              N 
Sbjct: 206 -MGPEFQSAAGVTWISLRNNKLVL-IEKALRFSQNLEHFDLRGNGFHCGTLRDF-FSKNQ 262

Query: 238 TSLDLSSNQLSGLLPREVGNLKYLDSLSLDGNNLIGSIPPTIGYLTNLTSLNLGYNQLS- 296
               ++   +  L  +                       P    L  L            
Sbjct: 263 RVQTVAKQTVKKLTGQNEEECTVPTLGHYGAYCCEDLPAPFADRLIALKRKEHALLSGQG 322

Query: 297 ---SSIPPELMNCSQLQNLVLSHNTLSGIVPPEIGNLTHLRQLDLSHNFINGTIPSQLGY 353
                +  E  N ++ + +         ++            L+     ++  + +    
Sbjct: 323 SETERLECERENQARQREIDALKEQYRTVIDQVTLRKQAKITLEQKKKALDEQVSNGRRA 382

Query: 354 IPNISAVDLSKNNL 367
              +          
Sbjct: 383 HAELDGTLQQAVGQ 396

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 97.2 bits (242), Expect = 4e-22
 Identities = 41/343 (11%), Positives = 94/343 (27%), Gaps = 16/343 (4%)

Query: 10  LSQLNFTCFPNLESIIIPYTLLSGRIPSEIGALSKLEELALPYNSLTG-TIPAEIGSLRN 68
           +S+++ +     ++I +    ++     + G  S+++ L L  N +          S   
Sbjct: 111 ISRVSCSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDT 170

Query: 69  LVELDLSNNILNGSIPLEFGNLKDLDALRLRGNKLDGLIPSSIGNLTNLTHLDLSLNQLS 128
           L  L+L  N +   +  +      L  L L  NKL   +     +   +T + L  N+L 
Sbjct: 171 LEHLNLQYNFIY-DVKGQV-VFAKLKTLDLSSNKLAF-MGPEFQSAAGVTWISLRNNKLV 227

Query: 129 GRLPQEVGNLKNLLSLFLDNNNL-TGPIPSTLYHLNQLSNLYLAYNNLVGPLPKEVGNMK 187
             + + +   +NL    L  N    G +        ++  +       +    +E     
Sbjct: 228 -LIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTGQNEE--ECT 284

Query: 188 NLDSLLLNRNSLTGPIPSTIGYLNLGGKLDLSHNRLD----SPIPPTIGNLTNLTSLDLS 243
                                 L    + + +           +     N      +D  
Sbjct: 285 VPTLGHYGAYCCEDLPAPFADRLIALKRKEHALLSGQGSETERLECERENQARQREIDAL 344

Query: 244 SNQLSGLLPREVGNLKYLDSLSLDGNNLIGSIPPTIGYLTNLTSLNLGYNQLS--SSIPP 301
             Q   ++ +     +   +L      L   +         L                  
Sbjct: 345 KEQYRTVIDQVTLRKQAKITLEQKKKALDEQVSNGRRAHAELDGTLQQAVGQIELQHATE 404

Query: 302 ELMNCSQLQNLVLSHNTLSGIVPPEIGNLTHLRQLDLSHNFIN 344
           E      L+ +V  +  +   V  +      +R  D+  +   
Sbjct: 405 EQSPLQLLRAIVKRYEEMY--VEQQSVQNNAIRDWDMYQHKET 445

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 77.6 bits (191), Expect = 1e-15
 Identities = 36/259 (13%), Positives = 72/259 (27%), Gaps = 5/259 (1%)

Query: 42  LSKLEELALPYNSLTGTIPAEIGSLRNLVELDLSNNILNGSIPLEFGNLKDLDALRLRGN 101
            +KL+ L L  N L   +  E  S   +  + L NN L   I       ++L+   LRGN
Sbjct: 190 FAKLKTLDLSSNKLA-FMGPEFQSAAGVTWISLRNNKLV-LIEKALRFSQNLEHFDLRGN 247

Query: 102 KLD-GLIPSSIGNLTNLTHLDL-SLNQLSGRLPQEVGNLKNLLSLFLDNNNLTGPIPSTL 159
               G +         +  +   ++ +L+G+  +E               +L  P    L
Sbjct: 248 GFHCGTLRDFFSKNQRVQTVAKQTVKKLTGQNEEECTVPTLGHYGAYCCEDLPAPFADRL 307

Query: 160 YHLNQLSNLYLA-YNNLVGPLPKEVGNMKNLDSLLLNRNSLTGPIPSTIGYLNLGGKLDL 218
             L +  +  L+   +    L  E  N      +   +      I            L+ 
Sbjct: 308 IALKRKEHALLSGQGSETERLECERENQARQREIDALKEQYRTVIDQVTLRKQAKITLEQ 367

Query: 219 SHNRLDSPIPPTIGNLTNLTSLDLSSNQLSGLLPREVGNLKYLDSLSLDGNNLIGSIPPT 278
               LD  +         L      +     L              ++        +   
Sbjct: 368 KKKALDEQVSNGRRAHAELDGTLQQAVGQIELQHATEEQSPLQLLRAIVKRYEEMYVEQQ 427

Query: 279 IGYLTNLTSLNLGYNQLSS 297
                 +   ++  ++ + 
Sbjct: 428 SVQNNAIRDWDMYQHKETQ 446

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 59.9 bits (145), Expect = 5e-10
 Identities = 19/95 (20%), Positives = 36/95 (37%), Gaps = 2/95 (2%)

Query: 274 SIPPTIGYLTNLTSLNLGYNQLSSSIPPELMNCSQLQNLVLSHNTLSGIVPPEIGNLTHL 333
           +I              +  + L  ++     +   ++ L LS N LS I   ++   T L
Sbjct: 1   AIHEIKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKL 60

Query: 334 RQLDLSHNFINGTIPSQLGYIPNISAVDLSKNNLS 368
             L+LS N +       L  +  +  +DL+ N + 
Sbjct: 61  ELLNLSSNVL--YETLDLESLSTLRTLDLNNNYVQ 93

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score =  143 bits (361), Expect = 9e-38
 Identities = 73/320 (22%), Positives = 128/320 (40%), Gaps = 28/320 (8%)

Query: 42  LSKLEELALPYNSLTGTIPAEIGSLRNLVELDLSNNILNGSIPLEFGNLKDLDALRLRGN 101
           L+  + +    +++     A + S R +  L+L++  +       F     +  L +  N
Sbjct: 50  LNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFN 109

Query: 102 KLDGLIPSSIGNLTNLTHLDLSLNQLSGRLPQEV-GNLKNLLSLFLDNNNLTGPIPSTLY 160
            +  L P    N+  LT L L  N LS  LP+ +  N   L +L + NNNL      T  
Sbjct: 110 AIRYLPPHVFQNVPLLTVLVLERNDLS-SLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQ 168

Query: 161 HLNQLSNLYLAYNNLVGPLPKEVGNMKNLDSLLLNRNSLTG-PIPSTIGYLNLGG----- 214
               L NL L+ N L      ++  + +L    ++ N L+   IP  +  L+        
Sbjct: 169 ATTSLQNLQLSSNRLTH---VDLSLIPSLFHANVSYNLLSTLAIPIAVEELDASHNSINV 225

Query: 215 ----------KLDLSHNRLDSPIPPTIGNLTNLTSLDLSSNQLSGLLPREVGNLKYLDSL 264
                      L L HN L       + N   L  +DLS N+L  ++      ++ L+ L
Sbjct: 226 VRGPVNVELTILKLQHNNLTD--TAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERL 283

Query: 265 SLDGNNLIGSIPPTIGYLTNLTSLNLGYNQLSSSIPPELMNCSQLQNLVLSHNTLSGIVP 324
            +  N  + ++      +  L  L+L +N L   +        +L+NL L HN++  +  
Sbjct: 284 YISNNR-LVALNLYGQPIPTLKVLDLSHNHL-LHVERNQPQFDRLENLYLDHNSIVTL-- 339

Query: 325 PEIGNLTHLRQLDLSHNFIN 344
            ++     L+ L LSHN  +
Sbjct: 340 -KLSTHHTLKNLTLSHNDWD 358

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score =  134 bits (339), Expect = 9e-35
 Identities = 61/359 (16%), Positives = 124/359 (34%), Gaps = 27/359 (7%)

Query: 49  ALPYNSLTGTIPAEIGSLRNLVELDLSNNILNGSIPLEFGNLKDLDALRLRGNKLDGLIP 108
             P       I + +       ++ +     +     E   L +   +  + + +  L  
Sbjct: 9   VKPRQPEYKCIDSNLQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMRKLPA 68

Query: 109 SSIGNLTNLTHLDLSLNQLSGRLPQEV-GNLKNLLSLFLDNNNLTGPIPSTLYHLNQLSN 167
           + + +   +  L+L+  Q+   +          +  L++  N +    P    ++  L+ 
Sbjct: 69  ALLDSFRQVELLNLNDLQIE-EIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTV 127

Query: 168 LYLAYNNLVGPLPKEVGNMKNLDSLLLNRNSLTGPIPSTIGYLNLGGKLDLSHNRLDSPI 227
           L L  N+L         N   L +L ++ N+L      T         L LS NRL   +
Sbjct: 128 LVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTH-V 186

Query: 228 PP-----------------TIGNLTNLTSLDLSSNQLSGLLPREVGNLKYLDSLSLDGNN 270
                              T+     +  LD S N ++ +          L  L L  NN
Sbjct: 187 DLSLIPSLFHANVSYNLLSTLAIPIAVEELDASHNSINVV---RGPVNVELTILKLQHNN 243

Query: 271 LIGSIPPTIGYLTNLTSLNLGYNQLSSSIPPELMNCSQLQNLVLSHNTLSGIVPPEIGNL 330
           L       +     L  ++L YN+L   +    +   +L+ L +S+N L  +       +
Sbjct: 244 LTD--TAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVAL-NLYGQPI 300

Query: 331 THLRQLDLSHNFINGTIPSQLGYIPNISAVDLSKNNLSGVVPASVRIIPKLIVSENNLE 389
             L+ LDLSHN +   +         +  + L  N++  +  ++   +  L +S N+ +
Sbjct: 301 PTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIVTLKLSTHHTLKNLTLSHNDWD 358

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 99.6 bits (248), Expect = 8e-23
 Identities = 58/265 (21%), Positives = 100/265 (37%), Gaps = 22/265 (8%)

Query: 42  LSKLEELALPYNSLTGTIPAEI-GSLRNLVELDLSNNILNGSIPLEFGNLKDLDALRLRG 100
             KL  L++  N+L   I  +   +  +L  L LS+N L     ++   +  L    +  
Sbjct: 146 TPKLTTLSMSNNNLE-RIEDDTFQATTSLQNLQLSSNRLTH---VDLSLIPSLFHANVSY 201

Query: 101 NKLDGLIPSSIGNLTNLTHLDLSLNQLSGRLPQEVGNLKNLLSLFLDNNNLTGPIPSTLY 160
           N L     S++     +  LD S N ++  +   V     L  L L +NNLT    + L 
Sbjct: 202 NLL-----STLAIPIAVEELDASHNSIN-VVRGPV--NVELTILKLQHNNLTDT--AWLL 251

Query: 161 HLNQLSNLYLAYNNLVGPLPKEVGNMKNLDSLLLNRNSLTGPIPSTIGYLNLGGKLDLSH 220
           +   L  + L+YN L   +      M+ L+ L ++ N L   +      +     LDLSH
Sbjct: 252 NYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVA-LNLYGQPIPTLKVLDLSH 310

Query: 221 NRLDSPIPPTIGNLTNLTSLDLSSNQLSGLLPREVGNLKYLDSLSLDGNNLIGSIPPTIG 280
           N L   +         L +L L  N +  L   ++     L +L+L  N+   +      
Sbjct: 311 NHLLH-VERNQPQFDRLENLYLDHNSIVTL---KLSTHHTLKNLTLSHNDWDCN--SLRA 364

Query: 281 YLTNLTSLNLGYNQLSSSIPPELMN 305
              N+    +        I  +L +
Sbjct: 365 LFRNVARPAVDDADQHCKIDYQLEH 389

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score =  140 bits (355), Expect = 6e-37
 Identities = 84/415 (20%), Positives = 140/415 (33%), Gaps = 45/415 (10%)

Query: 2   DNNGNAAELSQLNFTCFP-----NLESIIIPYTLLSGRIPSEIGALSKLEELALPYNSLT 56
                  +  +LNF   P     + +++ + +  L         +  +L+ L L    + 
Sbjct: 6   VVPNITYQCMELNFYKIPDNLPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQ 65

Query: 57  GTIPAEIGSLRNLVELDLSNNILNGSIPLEFGNLKDLDALRLRGNKLDGLIPSSIGNLTN 116
                   SL +L  L L+ N +       F  L  L  L      L  L    IG+L  
Sbjct: 66  TIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKT 125

Query: 117 LTHLDLSLNQL-SGRLPQEVGNLKNLLSLFLDNNNLTGPIPSTLYHLNQLSN----LYLA 171
           L  L+++ N + S +LP+   NL NL  L L +N +     + L  L+Q+      L L+
Sbjct: 126 LKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLS 185

Query: 172 YNNLVGPLPKEVGNMKNLDSLLLNRNSLTGPIPSTI-------GYLNLGGKLDLSHNRLD 224
            N +   +         L  L L  N  +  +  T            L      +   L+
Sbjct: 186 LNPMNF-IQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLE 244

Query: 225 SPIPPTIGNLTNLTSLDLSSNQLSGLLPREVGNLKYLDSLSLD--GNNLIGSIPPTIG-- 280
                 +  L NLT  +     L   L   +     L ++S     +  I  +       
Sbjct: 245 KFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDFSYNF 304

Query: 281 ------------------YLTNLTSLNLGYNQLSSSIPPELMNCSQLQNLVLSHNTLS-- 320
                              L +L  L    N+  ++     ++   L+ L LS N LS  
Sbjct: 305 GWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNA--FSEVDLPSLEFLDLSRNGLSFK 362

Query: 321 GIVPPEIGNLTHLRQLDLSHNFINGTIPSQLGYIPNISAVDLSKNNLSGVVPASV 375
           G         T L+ LDLS N +  T+ S    +  +  +D   +NL  +   SV
Sbjct: 363 GCCSQSDFGTTSLKYLDLSFNGVI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFSV 416

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score =  131 bits (331), Expect = 9e-34
 Identities = 68/348 (19%), Positives = 112/348 (32%), Gaps = 22/348 (6%)

Query: 35  IPSEIGALSKLEELALPYNSLTGTIPAE-IGSLRNLVELDLSNNILNGSIPLE------F 87
           I        +L +L L  N  +  +    I  L  L    L          LE       
Sbjct: 192 IQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSAL 251

Query: 88  GNLKDLDALRLRGNKLDGL---IPSSIGNLTNLTHLDLSLNQLSGRLPQEVGNLKNLLSL 144
             L +L     R   LD     I      LTN++   L    +  R+     N      L
Sbjct: 252 EGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIE-RVKDFSYNF-GWQHL 309

Query: 145 FLDNNNLTGPIPSTLYHLNQLSNLYLAYNNLVGPLPKEVGNMKNLDSLLLNRNSLT--GP 202
            L N             L  L  L    N       +   ++ +L+ L L+RN L+  G 
Sbjct: 310 ELVNCKFGQFPTL---KLKSLKRLTFTSNKGGNAFSEV--DLPSLEFLDLSRNGLSFKGC 364

Query: 203 IPSTIGYLNLGGKLDLSHNRLDSPIPPTIGNLTNLTSLDLSSNQLSGLLPREV-GNLKYL 261
              +         LDLS N + + +      L  L  LD   + L  +    V  +L+ L
Sbjct: 365 CSQSDFGTTSLKYLDLSFNGVIT-MSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNL 423

Query: 262 DSLSLDGNNLIGSIPPTIGYLTNLTSLNLGYNQLSSSIPPE-LMNCSQLQNLVLSHNTLS 320
             L +   +   +       L++L  L +  N    +  P+       L  L LS   L 
Sbjct: 424 IYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLE 483

Query: 321 GIVPPEIGNLTHLRQLDLSHNFINGTIPSQLGYIPNISAVDLSKNNLS 368
            + P    +L+ L+ L+++ N +          + ++  + L  N   
Sbjct: 484 QLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQKIWLHTNPWD 531

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score =  128 bits (323), Expect = 1e-32
 Identities = 78/386 (20%), Positives = 137/386 (35%), Gaps = 29/386 (7%)

Query: 15  FTCFPNLESIIIPYTLLSGRIPSEIGALSKLE----ELALPYNSLTGTIPAEIGSLRNLV 70
           F+   NLE + +    +     +++  L ++      L L  N +   I         L 
Sbjct: 145 FSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMN-FIQPGAFKEIRLH 203

Query: 71  ELDLSNNILNGSIPLE-FGNLKDLDALRL------RGNKLDGLIPSSIGNLTNLTHLDLS 123
           +L L NN  + ++       L  L+  RL          L+    S++  L NLT  +  
Sbjct: 204 KLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFR 263

Query: 124 LNQLSGRLPQEVG---NLKNLLSLFLDNNNLTG-PIPSTLYHLNQLSNLYLAYNNLVGPL 179
           L  L   L   +     L N+ S  L +  +      S  +    L  +   +       
Sbjct: 264 LAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDFSYNFGWQHLELVNCKFGQFPT-- 321

Query: 180 PKEVGNMKNLDSLLLNRNSLTGPIPSTIGYLNLGGKLDLSHNRLD--SPIPPTIGNLTNL 237
                 +K+L  L    N       S +   +L   LDLS N L        +    T+L
Sbjct: 322 ----LKLKSLKRLTFTSNKGGN-AFSEVDLPSLE-FLDLSRNGLSFKGCCSQSDFGTTSL 375

Query: 238 TSLDLSSNQLSGLLPREVGNLKYLDSLSLDGNNLIGSIPPTI-GYLTNLTSLNLGYNQLS 296
             LDLS N +  +       L+ L+ L    +NL      ++   L NL  L++ +    
Sbjct: 376 KYLDLSFNGVITM-SSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTR 434

Query: 297 SSIPPELMNCSQLQNLVLSHNTLSGIVPPEI-GNLTHLRQLDLSHNFINGTIPSQLGYIP 355
            +        S L+ L ++ N+      P+I   L +L  LDLS   +    P+    + 
Sbjct: 435 VAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLS 494

Query: 356 NISAVDLSKNNLSGVVPASVRIIPKL 381
           ++  ++++ N L  V       +  L
Sbjct: 495 SLQVLNMASNQLKSVPDGIFDRLTSL 520

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score =  122 bits (308), Expect = 1e-30
 Identities = 74/338 (21%), Positives = 117/338 (34%), Gaps = 24/338 (7%)

Query: 19  PNLESIIIPYTLLSGRIPSE-IGALSKLEELALPY------NSLTGTIPAEIGSLRNLVE 71
             L  + +     S  +    I  L+ LE   L         +L     + +  L NL  
Sbjct: 200 IRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTI 259

Query: 72  LDLSNNILNGS---IPLEFGNLKDLDALRLRGNKLDGLIPSSI-GNLTNLTHLDLSLNQL 127
            +     L+     I   F  L ++ +  L    ++ +   S      +L  ++    Q 
Sbjct: 260 EEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDFSYNFGWQHLELVNCKFGQF 319

Query: 128 SGRLPQEVGNLKNLLSLFLDNNNLTGPIPSTLYHLNQLSNLYLAYNNL--VGPLPKEVGN 185
                     LK+L  L   +N            L  L  L L+ N L   G   +    
Sbjct: 320 PT------LKLKSLKRLTFTSNKGGNAFSEV--DLPSLEFLDLSRNGLSFKGCCSQSDFG 371

Query: 186 MKNLDSLLLNRNSLTGPIPSTIGYLNLGGKLDLSHNRLDSPIPPTI-GNLTNLTSLDLSS 244
             +L  L L+ N +   + S    L     LD  H+ L      ++  +L NL  LD+S 
Sbjct: 372 TTSLKYLDLSFNGVIT-MSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISH 430

Query: 245 NQLSGLLPREVGNLKYLDSLSLDGNNLIGSIPPTI-GYLTNLTSLNLGYNQLSSSIPPEL 303
                        L  L+ L + GN+   +  P I   L NLT L+L   QL    P   
Sbjct: 431 THTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAF 490

Query: 304 MNCSQLQNLVLSHNTLSGIVPPEIGNLTHLRQLDLSHN 341
            + S LQ L ++ N L  +       LT L+++ L  N
Sbjct: 491 NSLSSLQVLNMASNQLKSVPDGIFDRLTSLQKIWLHTN 528

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score =  114 bits (287), Expect = 8e-28
 Identities = 68/297 (22%), Positives = 103/297 (34%), Gaps = 18/297 (6%)

Query: 10  LSQLNFTCFPNLESIII------PYTLLSGRIPSEIGALSKLEELALPYNSLTGTIPAEI 63
           L + + +    L ++ I              I      L+ +   +L   ++   +    
Sbjct: 243 LEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIE-RVKDFS 301

Query: 64  GSLRNLVELDLSNNILNGSIPLEFGNLKDLDALRLRGNKLDGLIPSSIGNLTNLTHLDLS 123
                   L+L N        L+  +LK L       NK          +L +L  LDLS
Sbjct: 302 Y-NFGWQHLELVNCKFGQFPTLKLKSLKRLT---FTSNKGGNAFSEV--DLPSLEFLDLS 355

Query: 124 LNQLS--GRLPQEVGNLKNLLSLFLDNNNLTGPIPSTLYHLNQLSNLYLAYNNLVGPLPK 181
            N LS  G   Q      +L  L L  N +   + S    L QL +L   ++NL      
Sbjct: 356 RNGLSFKGCCSQSDFGTTSLKYLDLSFNGVIT-MSSNFLGLEQLEHLDFQHSNLKQMSEF 414

Query: 182 EV-GNMKNLDSLLLNRNSLTGPIPSTIGYLNLGGKLDLSHNRLDSPIPPTI-GNLTNLTS 239
            V  +++NL  L ++              L+    L ++ N       P I   L NLT 
Sbjct: 415 SVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTF 474

Query: 240 LDLSSNQLSGLLPREVGNLKYLDSLSLDGNNLIGSIPPTIGYLTNLTSLNLGYNQLS 296
           LDLS  QL  L P    +L  L  L++  N L          LT+L  + L  N   
Sbjct: 475 LDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQKIWLHTNPWD 531

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score =  105 bits (264), Expect = 7e-25
 Identities = 63/274 (22%), Positives = 101/274 (36%), Gaps = 13/274 (4%)

Query: 15  FTCFPNLESIIIPYTLLSGRIPSEIGALSKLEELALPYNSLTGTIPAEIGSLRNLVELDL 74
           F C  N+ S  +    +  R+          + L L               L++L  L  
Sbjct: 278 FNCLTNVSSFSLVSVTIE-RVKDFSY-NFGWQHLELVNCKFGQFPT---LKLKSLKRLTF 332

Query: 75  SNNILNGSIPLEFGNLKDLDALRLRGNKLD--GLIPSSIGNLTNLTHLDLSLNQLSGRLP 132
           ++N    +      +L  L+ L L  N L   G    S    T+L +LDLS N +   + 
Sbjct: 333 TSNKGGNAFS--EVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVI-TMS 389

Query: 133 QEVGNLKNLLSLFLDNNNLTG-PIPSTLYHLNQLSNLYLAYNNLVGPLPKEVGNMKNLDS 191
                L+ L  L   ++NL      S    L  L  L +++ +           + +L+ 
Sbjct: 390 SNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEV 449

Query: 192 LLLNRNSLTGPIPSTI-GYLNLGGKLDLSHNRLDSPIPPTIGNLTNLTSLDLSSNQLSGL 250
           L +  NS        I   L     LDLS  +L+   P    +L++L  L+++SNQL  +
Sbjct: 450 LKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSV 509

Query: 251 LPREVGNLKYLDSLSLDGNNLIGSIPPTIGYLTN 284
                  L  L  + L  N    S  P I YL+ 
Sbjct: 510 PDGIFDRLTSLQKIWLHTNPWDCS-CPRIDYLSR 542

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 95.6 bits (238), Expect = 2e-21
 Identities = 41/177 (23%), Positives = 73/177 (41%), Gaps = 4/177 (2%)

Query: 217 DLSHNRLDSPIPPTIGNLTNLTSLDLSSNQLSGLLPREVGNLKYLDSLSLDGNNLIGSIP 276
                     IP  +    +  +LDLS N L  L      +   L  L L    +     
Sbjct: 13  QCMELNFYK-IPDNLP--FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIED 69

Query: 277 PTIGYLTNLTSLNLGYNQLSSSIPPELMNCSQLQNLVLSHNTLSGIVPPEIGNLTHLRQL 336
                L++L++L L  N + S         S LQ LV     L+ +    IG+L  L++L
Sbjct: 70  GAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKEL 129

Query: 337 DLSHNFIN-GTIPSQLGYIPNISAVDLSKNNLSGVVPASVRIIPKLIVSENNLELEN 392
           +++HN I    +P     + N+  +DLS N +  +    +R++ ++ +   +L+L  
Sbjct: 130 NVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSL 186

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score =  132 bits (334), Expect = 1e-35
 Identities = 71/299 (23%), Positives = 115/299 (38%), Gaps = 20/299 (6%)

Query: 53  NSLTGTIPAEIGSLRNLVELDLSNNILNGSIPLEFGNLKDLDALRLRGNKLDGLIPSSIG 112
             L   +P ++    +   LDL NN +      +F NLK+L  L L  NK+  + P +  
Sbjct: 41  LGLE-KVPKDLPP--DTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFA 97

Query: 113 NLTNLTHLDLSLNQLSGRLPQEVGNLKNLLSLFLDNNNLTGPIPSTLYHLNQLSNLYLAY 172
            L  L  L LS NQL   LP+++   K L  L +  N +T    S    LNQ+  + L  
Sbjct: 98  PLVKLERLYLSKNQLK-ELPEKM--PKTLQELRVHENEITKVRKSVFNGLNQMIVVELGT 154

Query: 173 NNL-VGPLPKEV-GNMKNLDSLLLNRNSLTGPIPSTIGYLNLGGKLDLSHNRLDSPIPPT 230
           N L    +       MK L  + +   ++T         L    +L L  N++      +
Sbjct: 155 NPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQGLPPSLT---ELHLDGNKITKVDAAS 211

Query: 231 IGNLTNLTSLDLSSNQLSGLLPREVGNLKYLDSLSLDGNNLIGSIPPTIGYLTNLTSLNL 290
           +  L NL  L LS N +S +    + N  +L  L L+ N L+  +P  +     +  + L
Sbjct: 212 LKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYL 270

Query: 291 GYNQLSS------SIPPELMNCSQLQNLVLSHN--TLSGIVPPEIGNLTHLRQLDLSHN 341
             N +S+        P      +    + L  N      I P     +     + L + 
Sbjct: 271 HNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQLGNY 329

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score =  108 bits (273), Expect = 5e-27
 Identities = 59/262 (22%), Positives = 101/262 (38%), Gaps = 17/262 (6%)

Query: 42  LSKLEELALPYNSLTGTIPAEIGSLRNLVELDLSNNILNGSIPLEFGNLKDLDALRLRGN 101
           L  L  L L  N ++   P     L  L  L LS N L     L     K L  LR+  N
Sbjct: 75  LKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLKE---LPEKMPKTLQELRVHEN 131

Query: 102 KLDGLIPSSIGNLTNLTHLDLSLNQL-SGRLPQEV-GNLKNLLSLFLDNNNLTGPIPSTL 159
           ++  +  S    L  +  ++L  N L S  +       +K L  + + + N+T  IP  L
Sbjct: 132 EITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITT-IPQGL 190

Query: 160 YHLNQLSNLYLAYNNLVGPLPKEVGNMKNLDSLLLNRNSLTGPIPSTIGYLNLGGKLDLS 219
                L+ L+L  N +       +  + NL  L L+ NS++     ++       +L L+
Sbjct: 191 --PPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLN 248

Query: 220 HNRLDSPIPPTIGNLTNLTSLDLSSNQLSGL------LPREVGNLKYLDSLSLDGNNL-I 272
           +N+L   +P  + +   +  + L +N +S +       P           +SL  N +  
Sbjct: 249 NNKLVK-VPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQY 307

Query: 273 GSIPP-TIGYLTNLTSLNLGYN 293
             I P T   +    ++ LG  
Sbjct: 308 WEIQPSTFRCVYVRAAVQLGNY 329

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score =  105 bits (264), Expect = 1e-25
 Identities = 62/259 (23%), Positives = 110/259 (42%), Gaps = 16/259 (6%)

Query: 116 NLTHLDLSLNQLSGRLPQEVGNLKNLLSLFLDNNNLTGPIPSTLYHLNQLSNLYLAYNNL 175
           +L  +  S   L  ++P+++    +   L L NN +T        +L  L  L L  N +
Sbjct: 32  HLRVVQCSDLGLE-KVPKDLP--PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKI 88

Query: 176 VGPLPKEVGNMKNLDSLLLNRNSLTGPIPSTIGYLNLGGKLDLSHNRLDSPIPPTI-GNL 234
               P     +  L+ L L++N L          L    +L +  N +   +  ++   L
Sbjct: 89  SKISPGAFAPLVKLERLYLSKNQLKELPEKMPKTLQ---ELRVHENEITK-VRKSVFNGL 144

Query: 235 TNLTSLDLSSNQL-SGLLPREV-GNLKYLDSLSLDGNNLIGSIPPTIGYLTNLTSLNLGY 292
             +  ++L +N L S  +       +K L  + +   N I +IP   G   +LT L+L  
Sbjct: 145 NQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTN-ITTIPQ--GLPPSLTELHLDG 201

Query: 293 NQLSSSIPPE-LMNCSQLQNLVLSHNTLSGIVPPEIGNLTHLRQLDLSHNFINGTIPSQL 351
           N+++  +    L   + L  L LS N++S +    + N  HLR+L L++N +   +P  L
Sbjct: 202 NKITK-VDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-KVPGGL 259

Query: 352 GYIPNISAVDLSKNNLSGV 370
                I  V L  NN+S +
Sbjct: 260 ADHKYIQVVYLHNNNISAI 278

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 90.1 bits (224), Expect = 2e-20
 Identities = 43/219 (19%), Positives = 87/219 (39%), Gaps = 20/219 (9%)

Query: 40  GALSKLEELALPYNSLTGTIPAEI-GSLRNLVELDLSNN-ILNGSIPLE-FGNLKDLDAL 96
                L+EL +  N +T  +   +   L  ++ ++L  N + +  I    F  +K L  +
Sbjct: 118 KMPKTLQELRVHENEIT-KVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYI 176

Query: 97  RLRGNKLDGLIPSSIGNLTNLTHLDLSLNQLSGRLPQEV-GNLKNLLSLFLDNNNLTGPI 155
           R+    +  +     G   +LT L L  N+++ ++       L NL  L L  N+++   
Sbjct: 177 RIADTNITTI---PQGLPPSLTELHLDGNKIT-KVDAASLKGLNNLAKLGLSFNSISAVD 232

Query: 156 PSTLYHLNQLSNLYLAYNNLVGPLPKEVGNMKNLDSLLLNRNSLT-------GPIPSTIG 208
             +L +   L  L+L  N LV  +P  + + K +  + L+ N+++        P      
Sbjct: 233 NGSLANTPHLRELHLNNNKLVK-VPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTK 291

Query: 209 YLNLGGKLDLSHNRL-DSPIPP-TIGNLTNLTSLDLSSN 245
             +    + L  N +    I P T   +    ++ L + 
Sbjct: 292 KASY-SGVSLFSNPVQYWEIQPSTFRCVYVRAAVQLGNY 329

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 50.8 bits (122), Expect = 3e-07
 Identities = 25/124 (20%), Positives = 53/124 (42%), Gaps = 6/124 (4%)

Query: 260 YLDSLSLDGNNLIGSIPPTIGYLTNLTSLNLGYNQLSSSIPPELMNCSQLQNLVLSHNTL 319
           +L  +      L   +P  +    +   L+L  N+++     +  N   L  L+L +N +
Sbjct: 32  HLRVVQCSDLGLE-KVPKDLP--PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKI 88

Query: 320 SGIVPPEIGNLTHLRQLDLSHNFINGTIPSQLGYIPNISAVDLSKNNLSGVVPASVRIIP 379
           S I P     L  L +L LS N +   +P ++     +  + + +N ++ V  +    + 
Sbjct: 89  SKISPGAFAPLVKLERLYLSKNQLK-ELPEKM--PKTLQELRVHENEITKVRKSVFNGLN 145

Query: 380 KLIV 383
           ++IV
Sbjct: 146 QMIV 149

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score =  132 bits (333), Expect = 2e-35
 Identities = 63/307 (20%), Positives = 112/307 (36%), Gaps = 21/307 (6%)

Query: 45  LEELALPYNSLTGTIPAEIGSLRNLVELDLSNNILNGSIPLEFGNLKDLDALRLRGNKLD 104
           L  +      L   +P EI    +   LDL NN ++     +F  L+ L AL L  NK+ 
Sbjct: 35  LRVVQCSDLGLK-AVPKEISP--DTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKIS 91

Query: 105 GLIPSSIGNLTNLTHLDLSLNQLSGRLPQEVGNLKNLLSLFLDNNNLTGPIPSTLYHLNQ 164
            +   +   L  L  L +S N L   +P  +    +L+ L + +N +          L  
Sbjct: 92  KIHEKAFSPLRKLQKLYISKNHLV-EIPPNL--PSSLVELRIHDNRIRKVPKGVFSGLRN 148

Query: 165 LSNLYLAYNNL-VGPLPKEVGNMKNLDSLLLNRNSLTGPIPSTIGYLNLGGKLDLSHNRL 223
           ++ + +  N L          +   L+ L ++   LTG        LN   +L L HN++
Sbjct: 149 MNCIEMGGNPLENSGFEPGAFDGLKLNYLRISEAKLTGIPKDLPETLN---ELHLDHNKI 205

Query: 224 DSPIPPTIGNLTNLTSLDLSSNQLSGLLPREVGNLKYLDSLSLDGNNLIGSIPPTIGYLT 283
            +     +   + L  L L  NQ+  +    +  L  L  L LD N L   +P  +  L 
Sbjct: 206 QAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLS-RVPAGLPDLK 264

Query: 284 NLTSLNLGYNQLSSSIPPE-------LMNCSQLQNLVLSHN--TLSGIVPPEIGNLTHLR 334
            L  + L  N + + +           +  +    + L +N      + P     +T   
Sbjct: 265 LLQVVYLHTNNI-TKVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQPATFRCVTDRL 323

Query: 335 QLDLSHN 341
            +   + 
Sbjct: 324 AIQFGNY 330

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score =  102 bits (256), Expect = 1e-24
 Identities = 65/258 (25%), Positives = 109/258 (42%), Gaps = 15/258 (5%)

Query: 116 NLTHLDLSLNQLSGRLPQEVGNLKNLLSLFLDNNNLTGPIPSTLYHLNQLSNLYLAYNNL 175
           +L  +  S   L   +P+E+    +   L L NN+++         L  L  L L  N +
Sbjct: 34  HLRVVQCSDLGLK-AVPKEIS--PDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKI 90

Query: 176 VGPLPKEVGNMKNLDSLLLNRNSLTGPIPSTIGYLNLGGKLDLSHNRLDSPIPPTIGNLT 235
                K    ++ L  L +++N L    P+    L    +L +  NR+          L 
Sbjct: 91  SKIHEKAFSPLRKLQKLYISKNHLVEIPPNLPSSL---VELRIHDNRIRKVPKGVFSGLR 147

Query: 236 NLTSLDLSSNQL--SGLLPREVGNLKYLDSLSLDGNNLIGSIPPTIGYLTNLTSLNLGYN 293
           N+  +++  N L  SG  P     LK L+ L +    L   IP        L  L+L +N
Sbjct: 148 NMNCIEMGGNPLENSGFEPGAFDGLK-LNYLRISEAKLT-GIPK--DLPETLNELHLDHN 203

Query: 294 QLSSSIPPE-LMNCSQLQNLVLSHNTLSGIVPPEIGNLTHLRQLDLSHNFINGTIPSQLG 352
           ++ + I  E L+  S+L  L L HN +  I    +  L  LR+L L +N ++  +P+ L 
Sbjct: 204 KIQA-IELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLS-RVPAGLP 261

Query: 353 YIPNISAVDLSKNNLSGV 370
            +  +  V L  NN++ V
Sbjct: 262 DLKLLQVVYLHTNNITKV 279

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score =  102 bits (255), Expect = 2e-24
 Identities = 55/263 (20%), Positives = 100/263 (38%), Gaps = 18/263 (6%)

Query: 42  LSKLEELALPYNSLTGTIPAEIGSLRNLVELDLSNNILNGSIPLEFGNLKDLDALRLRGN 101
           L  L  L L  N ++         LR L +L +S N L     +       L  LR+  N
Sbjct: 77  LQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNHLVE---IPPNLPSSLVELRIHDN 133

Query: 102 KLDGLIPSSIGNLTNLTHLDLSLNQL-SGRLPQEVGNLKNLLSLFLDNNNLTGPIPSTLY 160
           ++  +       L N+  +++  N L +        +   L  L +    LTG IP  L 
Sbjct: 134 RIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGLKLNYLRISEAKLTG-IPKDL- 191

Query: 161 HLNQLSNLYLAYNNLVGPLPKEV-GNMKNLDSLLLNRNSLTGPIPSTIGYLNLGGKLDLS 219
               L+ L+L +N +   +  E       L  L L  N +      ++ +L    +L L 
Sbjct: 192 -PETLNELHLDHNKIQA-IELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLD 249

Query: 220 HNRLDSPIPPTIGNLTNLTSLDLSSNQLSGLLP------REVGNLKYLDSLSLDGNNL-I 272
           +N+L   +P  + +L  L  + L +N ++ +               Y + +SL  N +  
Sbjct: 250 NNKLSR-VPAGLPDLKLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFNNPVPY 308

Query: 273 GSIPP-TIGYLTNLTSLNLGYNQ 294
             + P T   +T+  ++  G  +
Sbjct: 309 WEVQPATFRCVTDRLAIQFGNYK 331

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 86.2 bits (214), Expect = 5e-19
 Identities = 51/219 (23%), Positives = 89/219 (40%), Gaps = 19/219 (8%)

Query: 40  GALSKLEELALPYNSLTGTIPAEI-GSLRNLVELDLSNNILNGSI--PLEFGNLKDLDAL 96
              S L EL +  N +   +P  +   LRN+  +++  N L  S   P  F  LK L+ L
Sbjct: 120 NLPSSLVELRIHDNRIR-KVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGLK-LNYL 177

Query: 97  RLRGNKLDGLIPSSIGNLTNLTHLDLSLNQLSGRLPQEV-GNLKNLLSLFLDNNNLTGPI 155
           R+   KL G+          L  L L  N++   +  E       L  L L +N +    
Sbjct: 178 RISEAKLTGIPK---DLPETLNELHLDHNKIQ-AIELEDLLRYSKLYRLGLGHNQIRMIE 233

Query: 156 PSTLYHLNQLSNLYLAYNNLVGPLPKEVGNMKNLDSLLLNRNSLTGPIPSTIGYLNLGGK 215
             +L  L  L  L+L  N L   +P  + ++K L  + L+ N++T    +    +  G K
Sbjct: 234 NGSLSFLPTLRELHLDNNKLSR-VPAGLPDLKLLQVVYLHTNNITKVGVNDFCPVGFGVK 292

Query: 216 ------LDLSHNRLD-SPIPP-TIGNLTNLTSLDLSSNQ 246
                 + L +N +    + P T   +T+  ++   + +
Sbjct: 293 RAYYNGISLFNNPVPYWEVQPATFRCVTDRLAIQFGNYK 331

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 73.1 bits (180), Expect = 2e-14
 Identities = 45/219 (20%), Positives = 76/219 (34%), Gaps = 34/219 (15%)

Query: 188 NLDSLLLNRNSLT---GPIPSTIGYLNLGGKLDLSHNRLDSPIPPTIGNLTNLTSLDLSS 244
           +L  +  +   L      I      L      DL +N +          L +L +L L +
Sbjct: 34  HLRVVQCSDLGLKAVPKEISPDTTLL------DLQNNDISELRKDDFKGLQHLYALVLVN 87

Query: 245 NQLSGLLPREVGNLKYLDSLSLDGNNL--------------------IGSIPP-TIGYLT 283
           N++S +  +    L+ L  L +  N+L                    I  +P      L 
Sbjct: 88  NKISKIHEKAFSPLRKLQKLYISKNHLVEIPPNLPSSLVELRIHDNRIRKVPKGVFSGLR 147

Query: 284 NLTSLNLGYNQL-SSSIPPELMNCSQLQNLVLSHNTLSGIVPPEIGNLTHLRQLDLSHNF 342
           N+  + +G N L +S   P   +  +L  L +S   L+GI          L +L L HN 
Sbjct: 148 NMNCIEMGGNPLENSGFEPGAFDGLKLNYLRISEAKLTGIPK---DLPETLNELHLDHNK 204

Query: 343 INGTIPSQLGYIPNISAVDLSKNNLSGVVPASVRIIPKL 381
           I       L     +  + L  N +  +   S+  +P L
Sbjct: 205 IQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTL 243

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 71.2 bits (175), Expect = 7e-14
 Identities = 42/199 (21%), Positives = 74/199 (37%), Gaps = 15/199 (7%)

Query: 9   ELSQLNFTCFPNLESIIIPY-TLLSGRIPSEIGALSKLEELALPYNSLTGTIPAEIGSLR 67
           ++ +  F+   N+  I +    L +           KL  L +    LT  IP       
Sbjct: 137 KVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGLKLNYLRISEAKLT-GIPK--DLPE 193

Query: 68  NLVELDLSNNILNGSIPLE-FGNLKDLDALRLRGNKLDGLIPSSIGNLTNLTHLDLSLNQ 126
            L EL L +N +  +I LE       L  L L  N++  +   S+  L  L  L L  N+
Sbjct: 194 TLNELHLDHNKIQ-AIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNK 252

Query: 127 LSGRLPQEVGNLKNLLSLFLDNNNLTGPIPSTLYHLN------QLSNLYLAYNNL-VGPL 179
           LS R+P  + +LK L  ++L  NN+T    +    +         + + L  N +    +
Sbjct: 253 LS-RVPAGLPDLKLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEV 311

Query: 180 PKEV-GNMKNLDSLLLNRN 197
                  + +  ++     
Sbjct: 312 QPATFRCVTDRLAIQFGNY 330

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 51.2 bits (123), Expect = 2e-07
 Identities = 29/133 (21%), Positives = 50/133 (37%), Gaps = 9/133 (6%)

Query: 260 YLDSLSLDGNNLIGSIPPTIGYLTNLTSLNLGYNQLSSSIPPELMNCSQLQNLVLSHNTL 319
           +L  +      L  ++P  I    + T L+L  N +S     +      L  LVL +N +
Sbjct: 34  HLRVVQCSDLGLK-AVPKEIS--PDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKI 90

Query: 320 SGIVPPEIGNLTHLRQLDLSHNFINGTIPSQLGYIPNISAVDLSKNNLSGVVPASVRIIP 379
           S I       L  L++L +S N +   IP  L    ++  + +  N +  V       + 
Sbjct: 91  SKIHEKAFSPLRKLQKLYISKNHLV-EIPPNL--PSSLVELRIHDNRIRKVPKGVFSGLR 147

Query: 380 KLIV---SENNLE 389
            +       N LE
Sbjct: 148 NMNCIEMGGNPLE 160

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score =  133 bits (338), Expect = 4e-35
 Identities = 82/367 (22%), Positives = 144/367 (39%), Gaps = 51/367 (13%)

Query: 35  IPSEIGALSKLEELALPYNSLTGTIPAEIGSLRNLVELDLSNNILNGSIPLEFGNLKDLD 94
           I     + + L+E     ++LT  +P E  ++++  E   + +    + P   G  +++ 
Sbjct: 3   INPRNVSNTFLQEPLRHSSNLT-EMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMA 61

Query: 95  ALRLRGNKLDGL------------IPSSIGNLTNLTHLDLSLNQLSGRLPQEVGNLKNLL 142
             RLR                   +P       +L  L  S N L+  LP+   +LK+LL
Sbjct: 62  VSRLRDCLDRQAHELELNNLGLSSLPELPP---HLESLVASCNSLT-ELPELPQSLKSLL 117

Query: 143 SLFLDNNNLTGPIPSTLYHLNQLSNLYLAYNNLVGPLPKEVGNMKNLDSLLLNRNSLTGP 202
               +   L+   P        L  L ++ N L   LP E+ N   L  + ++ NSL   
Sbjct: 118 VDNNNLKALSDLPPL-------LEYLGVSNNQLEK-LP-ELQNSSFLKIIDVDNNSLKK- 167

Query: 203 IPSTIGYLNLGGKLDLSHNRLDSPIPPTIGNLTNLTSLDLSSNQLSGLLPREVGNLKYLD 262
           +P     L     +   +N+L+    P + NL  LT++   +N L   LP    +L+ + 
Sbjct: 168 LPDLPPSLE---FIAAGNNQLEE--LPELQNLPFLTAIYADNNSLKK-LPDLPLSLESIV 221

Query: 263 SLSLDGNNLIGSIPPTIGYLTNLTSLNLGYNQLSSSIPPELMNCSQLQNLVLSHNTLSGI 322
                 N L     P +  L  LT++    N L  ++P        L+ L +  N L+ +
Sbjct: 222 ---AGNNIL--EELPELQNLPFLTTIYADNNLL-KTLPDLP---PSLEALNVRDNYLTDL 272

Query: 323 VPPEIGNLTHLRQLDLSHNFINGTIPSQLGYIPNISAVDLSKNNLSGVVPASVRIIPKLI 382
            P    +LT    LD+S N  +  +       PN+  ++ S N +   +      + +L 
Sbjct: 273 -PELPQSLTF---LDVSENIFS-GLSE---LPPNLYYLNASSNEIR-SLCDLPPSLEELN 323

Query: 383 VSENNLE 389
           VS N L 
Sbjct: 324 VSNNKLI 330

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score =  130 bits (329), Expect = 6e-34
 Identities = 82/384 (21%), Positives = 138/384 (35%), Gaps = 66/384 (17%)

Query: 34  RIPSEIGALSKLEELALPYNSLTGTIPAEIGSLR-------------NLVELDLSNNILN 80
            +P E   +    E    ++      P   G  R                EL+L+N  L+
Sbjct: 25  EMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLDRQAHELELNNLGLS 84

Query: 81  GSIPLEFGNLKDLDALRLRGNKLDGLIPSSIGNLTNLTHLDLSLNQLSGRLPQ------- 133
            S+P    +L+ L       N L  L P    +L +L   + +L  LS   P        
Sbjct: 85  -SLPELPPHLESLV---ASCNSLTEL-PELPQSLKSLLVDNNNLKALSDLPPLLEYLGVS 139

Query: 134 --------EVGNLKNLLSLFLDNNNLTGPIPSTLYHLNQLSNLYLAYNNLVGPLPKEVGN 185
                   E+ N   L  + +DNN+L             L  +    N L      E+ N
Sbjct: 140 NNQLEKLPELQNSSFLKIIDVDNNSLKKLPDL----PPSLEFIAAGNNQLEE--LPELQN 193

Query: 186 MKNLDSLLLNRNSLTGPIPSTIGYLNLGGKLDLSHNRLDSPIPPTIGNLTNLTSLDLSSN 245
           +  L ++  + NSL   +P     L     +   +N L+    P + NL  LT++   +N
Sbjct: 194 LPFLTAIYADNNSLKK-LPDLPLSLE---SIVAGNNILEE--LPELQNLPFLTTIYADNN 247

Query: 246 QLSGLLPREVGNLKYLDSLSLDGNNLIGSIPPTIGYLTNLTSLNLGYNQLSSSIPPELMN 305
            L   LP    +L+ L+      +N +  +P     LT L      ++ LS   P     
Sbjct: 248 LLKT-LPDLPPSLEALNVR----DNYLTDLPELPQSLTFLDVSENIFSGLSELPP----- 297

Query: 306 CSQLQNLVLSHNTLSGIVPPEIGNLTHLRQLDLSHNFINGTIPSQLGYIPNISAVDLSKN 365
              L  L  S N +  +          L +L++S+N +   +P+       +  +  S N
Sbjct: 298 --NLYYLNASSNEIRSL----CDLPPSLEELNVSNNKLI-ELPALPP---RLERLIASFN 347

Query: 366 NLSGVVPASVRIIPKLIVSENNLE 389
           +L+  VP   + + +L V  N L 
Sbjct: 348 HLA-EVPELPQNLKQLHVEYNPLR 370

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score =  126 bits (319), Expect = 1e-32
 Identities = 93/384 (24%), Positives = 151/384 (39%), Gaps = 56/384 (14%)

Query: 10  LSQLNFTCFP----NLESIIIPYTLLSGRIPSEIGALSKLEELALPYNSLTGTIPAEIGS 65
           L+ L  +  P    +LES++     L+  +P    +L  L        +L+   P     
Sbjct: 78  LNNLGLSSLPELPPHLESLVASCNSLT-ELPELPQSLKSLLVDNNNLKALSDLPP----- 131

Query: 66  LRNLVELDLSNNILNGSIPLEFGNLKDLDALRLRGNKLDGLIPSSIGNLTNLTHLDLSLN 125
              L  L +SNN L   +P E  N   L  + +  N L  L         +L  +    N
Sbjct: 132 --LLEYLGVSNNQLE-KLP-ELQNSSFLKIIDVDNNSLKKLPDL----PPSLEFIAAGNN 183

Query: 126 QLSGRLPQEVGNLKNLLSLFLDNNNLTGPIPSTLYHLNQLSNLYLAYNNLVGPLPKEVGN 185
           QL   LP E+ NL  L +++ DNN+L             L ++    N L      E+ N
Sbjct: 184 QLE-ELP-ELQNLPFLTAIYADNNSLKKLPDL----PLSLESIVAGNNILE--ELPELQN 235

Query: 186 MKNLDSLLLNRNSLTGPIPSTIGYLNLGGKLDLSHNRLDSPIPPTIGNLTNLTSLDLSSN 245
           +  L ++  + N L   +P     L     L++  N L   +P    +LT L   +   +
Sbjct: 236 LPFLTTIYADNNLLKT-LPDLPPSLE---ALNVRDNYLTD-LPELPQSLTFLDVSENIFS 290

Query: 246 QLSGLLPREVGNLKYLDSLSLDGNNLIGSIPPTIGYLTNLTSLNLGYNQLSSSIPPELMN 305
            LS L P    NL YL++     +N I S+        +L  LN+  N+L   +P     
Sbjct: 291 GLSELPP----NLYYLNAS----SNEIRSLCDL---PPSLEELNVSNNKLIE-LPALP-- 336

Query: 306 CSQLQNLVLSHNTLSGIVPPEIGNLTHLRQLDLSHNFINGTIPSQLGYIPNISAVDLSKN 365
             +L+ L+ S N L+ + P    NL   +QL + +N +    P     + +     L  N
Sbjct: 337 -PRLERLIASFNHLAEV-PELPQNL---KQLHVEYNPLR-EFPDIPESVED-----LRMN 385

Query: 366 NLSGVVPASVRIIPKLIVSENNLE 389
           +    VP   + + +L V  N L 
Sbjct: 386 SHLAEVPELPQNLKQLHVETNPLR 409

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score =  108 bits (272), Expect = 4e-26
 Identities = 73/336 (21%), Positives = 117/336 (34%), Gaps = 59/336 (17%)

Query: 38  EIGALSKLEELALPYNSLTGTIPAEIGSLRNLVELDLSNNILNGSIPLEFGNLKDLDALR 97
           E+   S L+ + +  NSL   +P    SL     +   NN L   +P E  NL  L A+ 
Sbjct: 148 ELQNSSFLKIIDVDNNSLK-KLPDLPPSLE---FIAAGNNQLE-ELP-ELQNLPFLTAIY 201

Query: 98  LRGNKLDGLIPSSIGNLTNLTHLDLSLNQLSGRLPQEVGNLKNLLSLFLDNNNLTGPIPS 157
              N L  L         +L  +    N L      E+ NL  L +++ DNN L   +P 
Sbjct: 202 ADNNSLKKLPDL----PLSLESIVAGNNILE--ELPELQNLPFLTTIYADNNLLKT-LPD 254

Query: 158 TLYHLNQLSNLYLAYNNLVGPLPKEVGNMKNLDSLLLNRNSLTGPIPSTIGYLNLGG--- 214
                  L  L +  N L   LP+   ++  LD      + L+  +P  + YLN      
Sbjct: 255 ---LPPSLEALNVRDNYLTD-LPELPQSLTFLDVSENIFSGLS-ELPPNLYYLNASSNEI 309

Query: 215 -----------KLDLSHNRLDSPIPPTIGNLTNLTSLDLSSNQLSGLLPREVGNLKYLDS 263
                      +L++S+N+L   +P     L  L     S N L+ + P    NLK L  
Sbjct: 310 RSLCDLPPSLEELNVSNNKLIE-LPALPPRLERL---IASFNHLAEV-PELPQNLKQLHV 364

Query: 264 L---------------SLDGNNLIGSIPPTIGYLTNLTSLNLGYNQLSSSIPPELMNCSQ 308
                            L  N+ +  +P       NL  L++  N L    P        
Sbjct: 365 EYNPLREFPDIPESVEDLRMNSHLAEVPELPQ---NLKQLHVETNPLRE-FPDIP---ES 417

Query: 309 LQNLVLSHNTLSGIVPPEIGNLTHLRQLDLSHNFIN 344
           +++L ++   +             L      H+  +
Sbjct: 418 VEDLRMNSERVVDPYEFAHETTDKLEDDVFEHHHHH 453

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score =  103 bits (258), Expect = 3e-24
 Identities = 48/263 (18%), Positives = 89/263 (33%), Gaps = 36/263 (13%)

Query: 106 LIPSSIGNLTNLTHLDLSLNQLSGRLPQEVGNLKNLLSLFLDNNNLTGPIPSTLYHLNQL 165
            I     + T L       + L+  +P E  N+K+    +   +      P       ++
Sbjct: 2   FINPRNVSNTFLQEPLRHSSNLT-EMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREM 60

Query: 166 SNLYLAYNNLVGPLPKEVGNMKNLDSLLLNRNSLTGPIPSTIGYLNLGGKLDLSHNRLDS 225
           +   L                +    L LN   L+  +P    +L     L  S N L  
Sbjct: 61  AVSRLRDCLD-----------RQAHELELNNLGLS-SLPELPPHLE---SLVASCNSLTE 105

Query: 226 PIPPTIGNLTNLTSLDLSSNQLSGLLPREVGNLKYLDSLSLDGNNLIGSIPPTIGYLTNL 285
            +P    +L +L   + +   LS L P        L+ L +  N L     P +   + L
Sbjct: 106 -LPELPQSLKSLLVDNNNLKALSDLPPL-------LEYLGVSNNQL--EKLPELQNSSFL 155

Query: 286 TSLNLGYNQLSSSIPPELMNCSQLQNLVLSHNTLSGIVPPEIGNLTHLRQLDLSHNFING 345
             +++  N L   +P        L+ +   +N L  +  PE+ NL  L  +   +N +  
Sbjct: 156 KIIDVDNNSL-KKLPDLP---PSLEFIAAGNNQLEEL--PELQNLPFLTAIYADNNSLK- 208

Query: 346 TIPSQLGYIPNISAVDLSKNNLS 368
            +P       ++ ++    N L 
Sbjct: 209 KLPDLPL---SLESIVAGNNILE 228

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 98.5 bits (246), Expect = 9e-23
 Identities = 53/287 (18%), Positives = 96/287 (33%), Gaps = 39/287 (13%)

Query: 34  RIPSEIGALSKLEELALPYNSLTGTIPAEIGSLRNLVELDLSNNILNGSIPLEFGNLKDL 93
            +         LE +    N L      E+ +L  L  +   NN+L  ++P    +L+ L
Sbjct: 206 SLKKLPDLPLSLESIVAGNNILE--ELPELQNLPFLTTIYADNNLLK-TLPDLPPSLEAL 262

Query: 94  DALRLRGNKLDGLIPSSIGNLTNLTHLDLSLNQLSGRLPQEVGNLKNLLSLFLDNNNLTG 153
           +        L    P    +LT L   +   + LS   P       NL  L   +N +  
Sbjct: 263 NVRDNYLTDL----PELPQSLTFLDVSENIFSGLSELPP-------NLYYLNASSNEIRS 311

Query: 154 PIPSTLYHLNQLSNLYLAYNNLVGPLPKEVGNMKNLDSLLLNRNSLTGPIPSTIGYLNLG 213
                      L  L ++ N L+  LP     ++ L     + N L   +P     L   
Sbjct: 312 LCDL----PPSLEELNVSNNKLIE-LPALPPRLERLI---ASFNHLAE-VPELPQNLK-- 360

Query: 214 GKLDLSHNRLDSPIPPTIGNLTNLTSLDLSSNQLSGLLPREVGNLKYLDSLSLDGNNLIG 273
            +L + +N L    P    ++ +L      ++ L+ + P    NLK L        N + 
Sbjct: 361 -QLHVEYNPLRE-FPDIPESVEDLRM----NSHLAEV-PELPQNLKQLHV----ETNPLR 409

Query: 274 SIPPTIGYLTNLTSLNLGYNQLSSSIPPELMNCSQLQNLVLSHNTLS 320
             P       ++  L +   ++            +L++ V  H+   
Sbjct: 410 EFPDIPE---SVEDLRMNSERVVDPYEFAHETTDKLEDDVFEHHHHH 453

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score =  134 bits (339), Expect = 6e-35
 Identities = 75/409 (18%), Positives = 144/409 (35%), Gaps = 31/409 (7%)

Query: 10  LSQLNFTCFPNLESIIIPYTLLSGRIPSEIGALSKLEELALPYNSLTGTIPAEI-GSLRN 68
            + +       ++S+ + +  ++     ++ A + L+ L L  + +  TI  +   SL +
Sbjct: 17  FTSIPSGLTAAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRIN-TIEGDAFYSLGS 75

Query: 69  LVELDLSNNILNGSIPLEFGNLKDLDALRLRGNKLDGL-IPSSIGNLTNLTHLDLSLNQL 127
           L  LDLS+N L+      FG L  L  L L GN    L + S   NLTNL  L +   + 
Sbjct: 76  LEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVET 135

Query: 128 SGRLPQEV-GNLKNLLSLFLDNNNLTGPIPSTLYHLNQLSNLYLAYNNLVGPLPKEVGNM 186
              + +     L +L  L +   +L      +L  +  + +L L  +     L      +
Sbjct: 136 FSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESAFLLEIFADIL 195

Query: 187 KNLDSLLLNRNSLTGPIPSTIGYLNLGGKLDLSHNRLDSP----------IPPTIGNLTN 236
            ++  L L   +L     S +    +   +     R              +   I  L+ 
Sbjct: 196 SSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSE 255

Query: 237 LTSLDLSSNQLSGLLPREVGNLK--------YLDSLSLDGNNLIGSIPPTIGYLTNLTSL 288
           +   D + N L    P E   +          +  L +    L   +      L  +  +
Sbjct: 256 VEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRI 315

Query: 289 NLGYNQLSSSIPPELMNCSQLQNLVLSHNTLSGIVPPE---IGNLTHLRQLDLSHNFIN- 344
            +  +++         +   L+ L LS N +           G    L+ L LS N +  
Sbjct: 316 TVENSKVFLVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRS 375

Query: 345 -GTIPSQLGYIPNISAVDLSKNNLSGVVPASVRIIPKLIV---SENNLE 389
                  L  + N++++D+S+N     +P S +   K+     S   + 
Sbjct: 376 MQKTGEILLTLKNLTSLDISRNTFH-PMPDSCQWPEKMRFLNLSSTGIR 423

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score =  122 bits (309), Expect = 8e-31
 Identities = 63/386 (16%), Positives = 128/386 (33%), Gaps = 21/386 (5%)

Query: 1   MDNNGNAAELSQLNFTCFPNLESIIIPYTLLSGRIPSEIGALSKLEELALPYNSLTGTIP 60
           + N    +E+ +++F    +L  + I    L       + ++  +  L L  +     + 
Sbjct: 130 IGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESAFLLE 189

Query: 61  AEIGSLRNLVELDLSNNILNGSIPLEFGNLKDLDALRLRGNKLDGLIPSSIGNLTNLTHL 120
                L ++  L+L +  L           +    ++    +   L   S   L  L   
Sbjct: 190 IFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRY 249

Query: 121 DLSLNQLSGRLPQEVGNLKNLLSLFLDNNNLTGPIPSTLYHLNQLSNLYLAYNNLVGPLP 180
            L L+++         +         + +               +  L++    L   L 
Sbjct: 250 ILELSEVE------FDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLS 303

Query: 181 KEVGNMKNLDSLLLNRNSLTGPIPSTIGYLNLGGKLDLSHNRLDSPIPPT---IGNLTNL 237
                ++ +  + +  + +     S   +L     LDLS N +           G   +L
Sbjct: 304 TVYSLLEKVKRITVENSKVFLVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSL 363

Query: 238 TSLDLSSNQLSGL--LPREVGNLKYLDSLSLDGNNLIGSIPPTIGYLTNLTSLNLGYNQL 295
            +L LS N L  +      +  LK L SL +  N     +P +  +   +  LNL    +
Sbjct: 364 QTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNT-FHPMPDSCQWPEKMRFLNLSSTGI 422

Query: 296 SSSIPPELMNCSQLQNLVLSHNTLSGIVPPEIGNLTHLRQLDLSHNFINGTIPSQLGYIP 355
              +   +     L+ L +S+N L          L  L++L +S N +  T+P      P
Sbjct: 423 RV-VKTCIP--QTLEVLDVSNNNLDSFSL----FLPRLQELYISRNKLK-TLPD-ASLFP 473

Query: 356 NISAVDLSKNNLSGVVPASVRIIPKL 381
            +  + +S+N L  V       +  L
Sbjct: 474 VLLVMKISRNQLKSVPDGIFDRLTSL 499

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score =  116 bits (293), Expect = 1e-28
 Identities = 61/337 (18%), Positives = 116/337 (34%), Gaps = 21/337 (6%)

Query: 10  LSQLNFTCFPNLESIIIPYTLLSGRIPSEIGALSKLEELALPYNSLTGTIPAEIGSLRNL 69
           L ++      ++  + +  T L+    S +        +       +         L  L
Sbjct: 187 LLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKL 246

Query: 70  VELDLSNNILNGSIPLEFGNLKDLDALRLRGNKLDGLIPSSIGNLTNLTHLDLSLNQLSG 129
           +   L  +       +EF +           ++ D +          +  L +    L  
Sbjct: 247 LRYILELS------EVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFY 300

Query: 130 RLPQEVGNLKNLLSLFLDNNNLTGPIPSTLYHLNQLSNLYLAYNNL---VGPLPKEVGNM 186
            L      L+ +  + ++N+ +     S   HL  L  L L+ N +           G  
Sbjct: 301 DLSTVYSLLEKVKRITVENSKVFLVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAW 360

Query: 187 KNLDSLLLNRNSLT--GPIPSTIGYLNLGGKLDLSHNRLDSPIPPTIGNLTNLTSLDLSS 244
            +L +L+L++N L         +  L     LD+S N    P+P +      +  L+LSS
Sbjct: 361 PSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTF-HPMPDSCQWPEKMRFLNLSS 419

Query: 245 NQLSGLLPREVGNLKYLDSLSLDGNNLIGSIPPTIGYLTNLTSLNLGYNQLSSSIPPELM 304
             +  +       L+ LD +S   NN + S      +L  L  L +  N+L +   P+  
Sbjct: 420 TGIRVVKTCIPQTLEVLD-VS---NNNLDSFSL---FLPRLQELYISRNKLKT--LPDAS 470

Query: 305 NCSQLQNLVLSHNTLSGIVPPEIGNLTHLRQLDLSHN 341
               L  + +S N L  +       LT L+++ L  N
Sbjct: 471 LFPVLLVMKISRNQLKSVPDGIFDRLTSLQKIWLHTN 507

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 97.5 bits (243), Expect = 3e-22
 Identities = 48/236 (20%), Positives = 87/236 (36%), Gaps = 15/236 (6%)

Query: 42  LSKLEELALPYNSLTGTIPAEIGSLRNLVELDLSNNILNGSIPLEFGNLKDLDALRLRGN 101
              +  L +P   L   +      L  +  + + N+ +         +LK L+ L L  N
Sbjct: 285 TVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVFLVPCSFSQHLKSLEFLDLSEN 344

Query: 102 KLDGLI---PSSIGNLTNLTHLDLSLNQLS--GRLPQEVGNLKNLLSLFLDNNNLTGPIP 156
            +        +  G   +L  L LS N L    +  + +  LKNL SL +  N    P+P
Sbjct: 345 LMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFH-PMP 403

Query: 157 STLYHLNQLSNLYLAYNNLVGPLPKEVGNMKNLDSLLLNRNSLTGPIPSTIGYLNLGGKL 216
            +     ++  L L+   +   +       + L+ L ++ N+L       +  L    +L
Sbjct: 404 DSCQWPEKMRFLNLSSTGIRV-VKT--CIPQTLEVLDVSNNNLDS-FSLFLPRLQ---EL 456

Query: 217 DLSHNRLDSPIPPTIGNLTNLTSLDLSSNQLSGLLPREVGNLKYLDSLSLDGNNLI 272
            +S N+L + +P        L  + +S NQL  +       L  L  + L  N   
Sbjct: 457 YISRNKLKT-LPDA-SLFPVLLVMKISRNQLKSVPDGIFDRLTSLQKIWLHTNPWD 510

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 64.0 bits (156), Expect = 3e-11
 Identities = 26/140 (18%), Positives = 49/140 (35%), Gaps = 4/140 (2%)

Query: 237 LTSLDLSSNQLSGLLPREVGNLKYLDSLSLDGNNLIGSIPPTIGYLTNLTSLNLGYNQLS 296
               D  S   + +       +K LD   L  N +       +    NL  L L  ++++
Sbjct: 7   SGVCDGRSRSFTSIPSGLTAAMKSLD---LSFNKITYIGHGDLRACANLQVLILKSSRIN 63

Query: 297 SSIPPELMNCSQLQNLVLSHNTLSGIVPPEIGNLTHLRQLDLSHNFING-TIPSQLGYIP 355
           +       +   L++L LS N LS +     G L+ L+ L+L  N      + S    + 
Sbjct: 64  TIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLT 123

Query: 356 NISAVDLSKNNLSGVVPASV 375
           N+  + +        +    
Sbjct: 124 NLQTLRIGNVETFSEIRRID 143

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score =  126 bits (319), Expect = 1e-32
 Identities = 76/367 (20%), Positives = 140/367 (38%), Gaps = 37/367 (10%)

Query: 8   AELSQLNFTCFPNLESIIIPYTLLSGRIPSEIGA-LSKLEELALPYNSLTGTIPAEI-GS 65
           AEL++ +F+   +L+ + +        I +     LS L  L L YN     +       
Sbjct: 43  AELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFL-QLETGAFNG 101

Query: 66  LRNLVELDLSNNILNGSIPLE--FGNLKDLDALRLRGNKLDGLIPSSI-GNLTNLTHLDL 122
           L NL  L L+   L+G++     F  L  L+ L LR N +  + P+S   N+     LDL
Sbjct: 102 LANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDL 161

Query: 123 SLNQLS----------GRLPQEVGNLKNLLSLFLDNNNLTGPIPSTLYHLNQLSNLYLAY 172
           + N++                 +  L ++    ++   L        +    ++ L L+ 
Sbjct: 162 TFNKVKSICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSG 221

Query: 173 NNLVGPLPKEVGNMKNLDSLL-------------LNRNSLTGPIPSTIGYLNLGG--KLD 217
           N     + K   +      +                  +   P   T   L   G    D
Sbjct: 222 NGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCD 281

Query: 218 LSHNRLDSPIPPTI-GNLTNLTSLDLSSNQLSGLLPREVGNLKYLDSLSLDGNNLIGSIP 276
           LS +++ + +  ++  + T+L  L L+ N+++ +       L +L  L+L   N +GSI 
Sbjct: 282 LSKSKIFA-LLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLS-QNFLGSID 339

Query: 277 PTI-GYLTNLTSLNLGYNQLSSSIPPEL-MNCSQLQNLVLSHNTLSGIVPPEIGNLTHLR 334
             +   L  L  L+L YN + + +  +  +    L+ L L  N L  +       LT L+
Sbjct: 340 SRMFENLDKLEVLDLSYNHIRA-LGDQSFLGLPNLKELALDTNQLKSVPDGIFDRLTSLQ 398

Query: 335 QLDLSHN 341
           ++ L  N
Sbjct: 399 KIWLHTN 405

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score =  126 bits (319), Expect = 2e-32
 Identities = 70/356 (19%), Positives = 115/356 (32%), Gaps = 31/356 (8%)

Query: 45  LEELALPYNSLTGTIPAEIGSLRNLVELDLSNNILNGSIPLE-FGNLKDLDALRLRGNKL 103
           +  + L  NS+          L++L  L +        I    F  L  L  L+L  N+ 
Sbjct: 32  VNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQF 91

Query: 104 DGLIPSSIGNLTNLTHLDLSLNQL-SGRLPQEV-GNLKNLLSLFLDNNNLTGPIPSTL-Y 160
             L   +   L NL  L L+   L    L       L +L  L L +NN+    P++   
Sbjct: 92  LQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFL 151

Query: 161 HLNQLSNLYLAYNNL----------VGPLPKEVGNMKNLDSLLLNRNSLTGPIPSTIGYL 210
           ++ +   L L +N +                 +  + ++    +N   L           
Sbjct: 152 NMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKN 211

Query: 211 NLGGKLDLSHNRLDSPIPPTIGNLTNLTSL-------------DLSSNQLSGLLPREVGN 257
                LDLS N     +     +    T +                              
Sbjct: 212 TSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTFKG 271

Query: 258 LKYLDSLSLD-GNNLIGSIPPTI-GYLTNLTSLNLGYNQLSSSIPPE-LMNCSQLQNLVL 314
           L+     + D   + I ++  ++  + T+L  L L  N++ + I        + L  L L
Sbjct: 272 LEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEI-NKIDDNAFWGLTHLLKLNL 330

Query: 315 SHNTLSGIVPPEIGNLTHLRQLDLSHNFINGTIPSQLGYIPNISAVDLSKNNLSGV 370
           S N L  I      NL  L  LDLS+N I          +PN+  + L  N L  V
Sbjct: 331 SQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLKSV 386

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score =  126 bits (317), Expect = 3e-32
 Identities = 75/380 (19%), Positives = 130/380 (34%), Gaps = 33/380 (8%)

Query: 19  PNLESIIIPYTLLSGRIPSEIGALSKLEELALPYNSLTGTIPAEI-GSLRNLVELDLSNN 77
            ++  + +    ++    +    L  L+ L +   +    I       L +L+ L L  N
Sbjct: 30  AHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYN 89

Query: 78  ILNGSIPLE-FGNLKDLDALRLRGNKLDGLI--PSSIGNLTNLTHLDLSLNQLSGRLPQE 134
                +    F  L +L+ L L    LDG +   +    LT+L  L L  N +    P  
Sbjct: 90  QF-LQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPAS 148

Query: 135 V-GNLKNLLSLFLDNNNLTGPIPSTLYHL--NQLSNLYLAYNNLVGPLPKEVG------- 184
              N++    L L  N +       L +      + L L+   L       +G       
Sbjct: 149 FFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNP 208

Query: 185 -NMKNLDSLLLNRNSLTGPIPSTIGYLNLGGKL-------------DLSHNRLDSPIPPT 230
               ++ +L L+ N     +         G K+                H     P   T
Sbjct: 209 FKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFT 268

Query: 231 IGNL--TNLTSLDLSSNQLSGLLPREVGNLKYLDSLSLDGNNLIGSIPPTI-GYLTNLTS 287
              L  + + + DLS +++  LL     +   L+ L+L  N  I  I       LT+L  
Sbjct: 269 FKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNE-INKIDDNAFWGLTHLLK 327

Query: 288 LNLGYNQLSSSIPPELMNCSQLQNLVLSHNTLSGIVPPEIGNLTHLRQLDLSHNFINGTI 347
           LNL  N L S       N  +L+ L LS+N +  +       L +L++L L  N +    
Sbjct: 328 LNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLKSVP 387

Query: 348 PSQLGYIPNISAVDLSKNNL 367
                 + ++  + L  N  
Sbjct: 388 DGIFDRLTSLQKIWLHTNPW 407

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 96.7 bits (241), Expect = 4e-22
 Identities = 60/306 (19%), Positives = 110/306 (35%), Gaps = 29/306 (9%)

Query: 92  DLDALRLRGNKLDGLIPSSIGNLTNLTHLDLSLNQLSGRLPQEV-GNLKNLLSLFLDNNN 150
            ++ + L  N +  L  +S   L +L  L +        +       L +L+ L LD N 
Sbjct: 31  HVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQ 90

Query: 151 LTGPIPSTLYHLNQLSNLYLAYNNL-VGPLPKEV-GNMKNLDSLLLNRNSLTGPIPSTI- 207
                      L  L  L L   NL    L       + +L+ L+L  N++    P++  
Sbjct: 91  FLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFF 150

Query: 208 GYLNLGGKLDLSHNRLDSPIPPTIGNLT--NLTSLDLSSNQLSGLLPREVG--------N 257
             +     LDL+ N++ S     + N    + T L LSS  L  +    +G         
Sbjct: 151 LNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFK 210

Query: 258 LKYLDSLSLDGNNLIGSIPPTIGYLTNLTSL-------------NLGYNQLS--SSIPPE 302
              + +L L GN    S+          T +             + G+       +   +
Sbjct: 211 NTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTFK 270

Query: 303 LMNCSQLQNLVLSHNTLSGIVPPEIGNLTHLRQLDLSHNFINGTIPSQLGYIPNISAVDL 362
            +  S ++   LS + +  ++     + T L QL L+ N IN    +    + ++  ++L
Sbjct: 271 GLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNL 330

Query: 363 SKNNLS 368
           S+N L 
Sbjct: 331 SQNFLG 336

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score =  122 bits (308), Expect = 4e-31
 Identities = 58/258 (22%), Positives = 93/258 (36%), Gaps = 8/258 (3%)

Query: 16  TCFPNLESIIIPYTLLSGRIPSEIGALSKLEELALPYNSLTGTIPAEIGSLRNLVELDLS 75
           +C      ++     LS  +P  I   S    L L  N++          L +L  L L 
Sbjct: 51  SCSNQFSKVVCTRRGLS-EVPQGI--PSNTRYLNLMENNIQMIQADTFRHLHHLEVLQLG 107

Query: 76  NNILNGSIPLEFGNLKDLDALRLRGNKLDGLIPSSIGNLTNLTHLDLSLNQLSGRLPQEV 135
            N +       F  L  L+ L L  N L  +   +   L+ L  L L  N +   +P   
Sbjct: 108 RNSIRQIEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELWLRNNPIE-SIPSYA 166

Query: 136 -GNLKNLLSLFLDNNN-LTGPIPSTLYHLNQLSNLYLAYNNLVGPLPKEVGNMKNLDSLL 193
              + +L+ L L     L          L  L  L L   N+   +P  +  +  L+ L 
Sbjct: 167 FNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKD-MP-NLTPLVGLEELE 224

Query: 194 LNRNSLTGPIPSTIGYLNLGGKLDLSHNRLDSPIPPTIGNLTNLTSLDLSSNQLSGLLPR 253
           ++ N      P +   L+   KL + ++++          L +L  L+L+ N LS L   
Sbjct: 225 MSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHD 284

Query: 254 EVGNLKYLDSLSLDGNNL 271
               L+YL  L L  N  
Sbjct: 285 LFTPLRYLVELHLHHNPW 302

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score =  117 bits (295), Expect = 3e-29
 Identities = 52/244 (21%), Positives = 89/244 (36%), Gaps = 8/244 (3%)

Query: 140 NLLSLFLDNNNLTGPIPSTLYHLNQLSNLYLAYNNLVGPLPKEVGNMKNLDSLLLNRNSL 199
               +      L+  +P  +        L L  NN+         ++ +L+ L L RNS+
Sbjct: 55  QFSKVVCTRRGLSE-VPQGIPS--NTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSI 111

Query: 200 TGPIPSTIGYLNLGGKLDLSHNRLDSPIPP-TIGNLTNLTSLDLSSNQLSGLLPREVGNL 258
                     L     L+L  N L   IP      L+ L  L L +N +  +       +
Sbjct: 112 RQIEVGAFNGLASLNTLELFDNWLTV-IPSGAFEYLSKLRELWLRNNPIESIPSYAFNRV 170

Query: 259 KYLDSLSLDGNNLIGSIPPTI-GYLTNLTSLNLGYNQLSSSIPPELMNCSQLQNLVLSHN 317
             L  L L     +  I       L NL  LNLG   +     P L     L+ L +S N
Sbjct: 171 PSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKD--MPNLTPLVGLEELEMSGN 228

Query: 318 TLSGIVPPEIGNLTHLRQLDLSHNFINGTIPSQLGYIPNISAVDLSKNNLSGVVPASVRI 377
               I P     L+ L++L + ++ ++    +    + ++  ++L+ NNLS +       
Sbjct: 229 HFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTP 288

Query: 378 IPKL 381
           +  L
Sbjct: 289 LRYL 292

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score =  116 bits (292), Expect = 6e-29
 Identities = 61/302 (20%), Positives = 101/302 (33%), Gaps = 58/302 (19%)

Query: 43  SKLEELALPYNSLTGTIPAEIGSLRNLVELDLSNNILNGSIPLEFGNLKDLDALRLRGNK 102
           ++  ++      L+  +P  I    N   L+L  N +       F +L  L+ L+L  N 
Sbjct: 54  NQFSKVVCTRRGLS-EVPQGI--PSNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNS 110

Query: 103 LDGLIPSSIGNLTNLTHLDLSLNQLSGRLPQEV-GNLKNLLSLFLDNNNLTGPIPSTLYH 161
           +  +   +   L +L  L+L  N L+  +P      L  L  L+L NN +          
Sbjct: 111 IRQIEVGAFNGLASLNTLELFDNWLT-VIPSGAFEYLSKLRELWLRNNPIESIPSYAFNR 169

Query: 162 LNQLSNLYLAYNNLVGPLPKEV-GNMKNLDSLLLNRNSLTGPIPSTIGYLNLGGKLDLSH 220
           +  L  L L     +  + +     + NL  L L   ++                     
Sbjct: 170 VPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDM------------------ 211

Query: 221 NRLDSPIPPTIGNLTNLTSLDLSSNQLSGLLPREVGNLKYLDSLSLDGNNLIGSIPP-TI 279
                   P +  L  L  L++S N    + P     L  L  L +  +  +  I     
Sbjct: 212 --------PNLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQ-VSLIERNAF 262

Query: 280 GYLTNLTSLNLGYNQLSSSIPPELMNCSQLQNLVLSHNTLSGIVPPEIGNLTHLRQLDLS 339
             L +L  LNL +N LSS +P +L                          L +L +L L 
Sbjct: 263 DGLASLVELNLAHNNLSS-LPHDLFT-----------------------PLRYLVELHLH 298

Query: 340 HN 341
           HN
Sbjct: 299 HN 300

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 76.7 bits (189), Expect = 2e-15
 Identities = 40/165 (24%), Positives = 61/165 (36%), Gaps = 7/165 (4%)

Query: 15  FTCFPNLESIIIPYTLLSGRIPSEI-GALSKLEELALP-YNSLTGTIPAEI-GSLRNLVE 71
           F     L  + +    +   IPS     +  L  L L     L   I       L NL  
Sbjct: 143 FEYLSKLRELWLRNNPIE-SIPSYAFNRVPSLMRLDLGELKKLE-YISEGAFEGLFNLKY 200

Query: 72  LDLSNNILNGSIPLEFGNLKDLDALRLRGNKLDGLIPSSIGNLTNLTHLDLSLNQLSGRL 131
           L+L    +   +P     L  L+ L + GN    + P S   L++L  L +  +Q+S   
Sbjct: 201 LNLGMCNIK-DMP-NLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIE 258

Query: 132 PQEVGNLKNLLSLFLDNNNLTGPIPSTLYHLNQLSNLYLAYNNLV 176
                 L +L+ L L +NNL+         L  L  L+L +N   
Sbjct: 259 RNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYLVELHLHHNPWN 303

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score =  121 bits (306), Expect = 8e-31
 Identities = 61/256 (23%), Positives = 106/256 (41%), Gaps = 10/256 (3%)

Query: 43  SKLEELALPYNSLTGTIPAEIGSLRNLVELDLSNNILNGSIPLEFGNLKDLDALRLRGNK 102
           ++  ++     +L   +P  I    N   L+L  N +       F +L+ L+ L+L  N 
Sbjct: 43  NQFSKVICVRKNLR-EVPDGI--STNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNH 99

Query: 103 LDGLIPSSIGNLTNLTHLDLSLNQLSGRLPQEV-GNLKNLLSLFLDNNNLTGPIPSTLYH 161
           +  +   +   L NL  L+L  N+L+  +P      L  L  L+L NN +          
Sbjct: 100 IRTIEIGAFNGLANLNTLELFDNRLT-TIPNGAFVYLSKLKELWLRNNPIESIPSYAFNR 158

Query: 162 LNQLSNLYLAYNNLVGPLPKEV-GNMKNLDSLLLNRNSLTGPIPSTIGYLNLGGKLDLSH 220
           +  L  L L     +  + +     + NL  L L   +L   IP+    + L  +LDLS 
Sbjct: 159 IPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLRE-IPNLTPLIKL-DELDLSG 216

Query: 221 NRLDSPIPPTIGNLTNLTSLDLSSNQLSGLLPREVGNLKYLDSLSLDGNNLIGSIPP-TI 279
           N L +  P +   L +L  L +  +Q+  +      NL+ L  ++L  NNL   +P    
Sbjct: 217 NHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLT-LLPHDLF 275

Query: 280 GYLTNLTSLNLGYNQL 295
             L +L  ++L +N  
Sbjct: 276 TPLHHLERIHLHHNPW 291

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score =  114 bits (287), Expect = 2e-28
 Identities = 58/253 (22%), Positives = 96/253 (37%), Gaps = 6/253 (2%)

Query: 116 NLTHLDLSLNQLSGRLPQEVGNLKNLLSLFLDNNNLTGPIPSTLYHLNQLSNLYLAYNNL 175
             + +      L   +P  +    N   L L  N +     ++  HL  L  L L+ N++
Sbjct: 44  QFSKVICVRKNLR-EVPDGI--STNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHI 100

Query: 176 VGPLPKEVGNMKNLDSLLLNRNSLTGPIPSTIGYLNLGGKLDLSHNRLDSPIPPTIGNLT 235
                     + NL++L L  N LT        YL+   +L L +N ++S        + 
Sbjct: 101 RTIEIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIP 160

Query: 236 NLTSLDLSS-NQLSGLLPREVGNLKYLDSLSLDGNNLIGSIPPTIGYLTNLTSLNLGYNQ 294
           +L  LDL    +LS +       L  L  L+L   NL     P +  L  L  L+L  N 
Sbjct: 161 SLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNL--REIPNLTPLIKLDELDLSGNH 218

Query: 295 LSSSIPPELMNCSQLQNLVLSHNTLSGIVPPEIGNLTHLRQLDLSHNFINGTIPSQLGYI 354
           LS+  P        LQ L +  + +  I      NL  L +++L+HN +          +
Sbjct: 219 LSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPL 278

Query: 355 PNISAVDLSKNNL 367
            ++  + L  N  
Sbjct: 279 HHLERIHLHHNPW 291

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 89.8 bits (223), Expect = 8e-20
 Identities = 59/266 (22%), Positives = 92/266 (34%), Gaps = 55/266 (20%)

Query: 9   ELSQLNFTCFPNLESIIIPYTLLSGRIPSEI-GALSKLEELALPYNSLTGTIPAEIGSLR 67
            +   +F    +LE + +    +   I       L+ L  L L  N LT TIP       
Sbjct: 78  IIKVNSFKHLRHLEILQLSRNHIR-TIEIGAFNGLANLNTLELFDNRLT-TIPNGA---- 131

Query: 68  NLVELDLSNNILNGSIPLEFGNLKDLDALRLRGNKLDGLIPSSIGNLTNLTHLDLS-LNQ 126
                              F  L  L  L LR N ++ +   +   + +L  LDL  L +
Sbjct: 132 -------------------FVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKR 172

Query: 127 LSGRLPQEV-GNLKNLLSLFLDNNNLTGPIPSTLYHLNQLSNLYLAYNNLVGPLPKEVGN 185
           LS  + +     L NL  L L   NL   IP  L  L +L  L L+ N+L    P     
Sbjct: 173 LS-YISEGAFEGLSNLRYLNLAMCNLRE-IP-NLTPLIKLDELDLSGNHLSAIRPGSFQG 229

Query: 186 MKNLDSLLLNRNSLTGPIPSTIGYLNLGGKLDLSHNRLDSPIPPTIGNLTNLTSLDLSSN 245
           + +L                         KL +  +++         NL +L  ++L+ N
Sbjct: 230 LMHLQ------------------------KLWMIQSQIQVIERNAFDNLQSLVEINLAHN 265

Query: 246 QLSGLLPREVGNLKYLDSLSLDGNNL 271
            L+ L       L +L+ + L  N  
Sbjct: 266 NLTLLPHDLFTPLHHLERIHLHHNPW 291

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 75.6 bits (186), Expect = 5e-15
 Identities = 44/165 (26%), Positives = 66/165 (40%), Gaps = 7/165 (4%)

Query: 15  FTCFPNLESIIIPYTLLSGRIPSEI-GALSKLEELALP-YNSLTGTIPAEI-GSLRNLVE 71
           F     L+ + +    +   IPS     +  L  L L     L+  I       L NL  
Sbjct: 132 FVYLSKLKELWLRNNPIE-SIPSYAFNRIPSLRRLDLGELKRLS-YISEGAFEGLSNLRY 189

Query: 72  LDLSNNILNGSIPLEFGNLKDLDALRLRGNKLDGLIPSSIGNLTNLTHLDLSLNQLSGRL 131
           L+L+   L   IP     L  LD L L GN L  + P S   L +L  L +  +Q+    
Sbjct: 190 LNLAMCNLR-EIP-NLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIE 247

Query: 132 PQEVGNLKNLLSLFLDNNNLTGPIPSTLYHLNQLSNLYLAYNNLV 176
                NL++L+ + L +NNLT         L+ L  ++L +N   
Sbjct: 248 RNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHNPWN 292

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score =  121 bits (304), Expect = 3e-30
 Identities = 64/269 (23%), Positives = 104/269 (38%), Gaps = 35/269 (13%)

Query: 107 IPSSIGNLTNLTHLDLSLNQLSG---RLPQEVGNLKNLLSLFLDNNNLTGPIPSTLYHLN 163
           I   I N  +L+  +   N +SG            +       + N     +   L  +N
Sbjct: 3   IMLPINNNFSLS-QNSFYNTISGTYADYFSAWDKWEKQALPGENRNEAVSLLKECL--IN 59

Query: 164 QLSNLYLAYNNLVGPLPKEVGNMKNLDSLLLNRNSLTGPIPSTIGYLNLGGKLDLSHNRL 223
           Q S L L   NL   LP  +     +  L + +N+L   +P     L     LD   NRL
Sbjct: 60  QFSELQLNRLNLSS-LPDNLP--PQITVLEITQNALI-SLPELPASLE---YLDACDNRL 112

Query: 224 DSPIPPTIGNLTNLTSLDLSSNQLSGLLPREVGNLKYLDSLSLDGNNLIGSIPPTIGYLT 283
            + +P    +L +L   D+ +NQL+ +LP     L+Y+++     NN +  +P      T
Sbjct: 113 ST-LPELPASLKHL---DVDNNQLT-MLPELPALLEYINA----DNNQLTMLPELP---T 160

Query: 284 NLTSLNLGYNQLSSSIPPELMNCSQLQNLVLSHNTLSGIVPPEIGNLTHLRQ----LDLS 339
           +L  L++  NQL+  +P        L+ L +S N L  + P       H  +        
Sbjct: 161 SLEVLSVRNNQLTF-LPELP---ESLEALDVSTNLLESL-PAVPVRNHHSEETEIFFRCR 215

Query: 340 HNFINGTIPSQLGYIPNISAVDLSKNNLS 368
            N I   IP  +  +     + L  N LS
Sbjct: 216 ENRIT-HIPENILSLDPTCTIILEDNPLS 243

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score =  119 bits (299), Expect = 2e-29
 Identities = 64/304 (21%), Positives = 113/304 (37%), Gaps = 30/304 (9%)

Query: 52  YNSLTGTIPAEIGSLRNLVELDLSNNILNGSIP-LEFGNLKDLDALRLRGNKLDGLIPSS 110
           YN+++GT      +     +  L     N ++  L+   +     L+L    L  L P +
Sbjct: 19  YNTISGTYADYFSAWDKWEKQALPGENRNEAVSLLKECLINQFSELQLNRLNLSSL-PDN 77

Query: 111 IGNLTNLTHLDLSLNQLSGRLPQEVGNLKNLLSLFLDNNNLTGPIPSTLYHLNQLSNLYL 170
           +     +T L+++ N L   LP+   +L+ L      +N L+  +P        L +L +
Sbjct: 78  LP--PQITVLEITQNALI-SLPELPASLEYLD---ACDNRLST-LPELP---ASLKHLDV 127

Query: 171 AYNNLVGPLPKEVGNMKNLDSLLLNRNSLTGPIPSTIGYLNLGGKLDLSHNRLDSPIPPT 230
             N L   LP+    ++ ++    + N LT  +P     L     L + +N+L   +P  
Sbjct: 128 DNNQLTM-LPELPALLEYIN---ADNNQLTM-LPELPTSLE---VLSVRNNQLTF-LPEL 178

Query: 231 IGNLTNLTSLDLSSNQLSGLLPREVGNLKYLDSLSLD---GNNLIGSIPPTIGYLTNLTS 287
             +L    +LD+S+N L  L P       + +   +      N I  IP  I  L    +
Sbjct: 179 PESLE---ALDVSTNLLESL-PAVPVRNHHSEETEIFFRCRENRITHIPENILSLDPTCT 234

Query: 288 LNLGYNQLSSSIPPELMNCSQLQNLVLSHNTLSGIVPPEIGNLTHLRQLDLSHNFINGTI 347
           + L  N LSS I   L   +   +        S  +     N  H    D    +     
Sbjct: 235 IILEDNPLSSRIRESLSQQTAQPDYHGPRIYFS--MSDGQQNTLHRPLADAVTAWFPENK 292

Query: 348 PSQL 351
            S +
Sbjct: 293 QSDV 296

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score =  114 bits (287), Expect = 4e-29
 Identities = 64/276 (23%), Positives = 99/276 (35%), Gaps = 33/276 (11%)

Query: 71  ELDLSNNILNGSIPLEFGNLKDLDALRLRGNKLDGLIPSSIGNLTNLTHLDLSLNQLSGR 130
           E+  ++  L  S+P           L L  NKL  L       LT LT L LS N LS +
Sbjct: 11  EIRCNSKGLT-SVPTGI--PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFK 67

Query: 131 --LPQEVGNLKNLLSLFLDNNNLTGPIPSTLYHLNQLSNLYLAYNNLVGPLPKEVGNMKN 188
               Q      +L  L L  N +   + S    L QL +L   ++NL       V    +
Sbjct: 68  GCCSQSDFGTTSLKYLDLSFNGVIT-MSSNFLGLEQLEHLDFQHSNLKQMSEFSV--FLS 124

Query: 189 LDSLLLNRNSLTGPIPSTIGYLNLGGKLDLSHNRLDSPIPPTIGNLTNLTSLDLSSNQLS 248
           L +L+                      LD+SH             L++L  L ++ N   
Sbjct: 125 LRNLI---------------------YLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQ 163

Query: 249 GLLPREV-GNLKYLDSLSLDGNNLIGSIPP-TIGYLTNLTSLNLGYNQLSSSIPPELMNC 306
                ++   L+ L  L L     +  + P     L++L  LN+ +N   S         
Sbjct: 164 ENFLPDIFTELRNLTFLDLSQCQ-LEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCL 222

Query: 307 SQLQNLVLSHNTLSGIVPPEIGNL-THLRQLDLSHN 341
           + LQ L  S N +      E+ +  + L  L+L+ N
Sbjct: 223 NSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQN 258

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score =  110 bits (278), Expect = 7e-28
 Identities = 61/252 (24%), Positives = 97/252 (38%), Gaps = 15/252 (5%)

Query: 53  NSLTGTIPAEIGSLRNLVELDLSNNILNGSIPLEFGNLKDLDALRLRGNKLD--GLIPSS 110
             LT ++P  I    +   L+L +N L       F  L  L  L L  N L   G    S
Sbjct: 17  KGLT-SVPTGI--PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQS 73

Query: 111 IGNLTNLTHLDLSLNQLSGRLPQEVGNLKNLLSLFLDNNNLTG-PIPSTLYHLNQLSNLY 169
               T+L +LDLS N +   +      L+ L  L   ++NL      S    L  L  L 
Sbjct: 74  DFGTTSLKYLDLSFNGVI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLD 132

Query: 170 LAYNNLVGPLPKEV-GNMKNLDSLLLNRNSLTGPIPSTI--GYLNLGGKLDLSHNRLDSP 226
           +++ +        +   + +L+ L +  NS        I     NL   LDLS  +L+  
Sbjct: 133 ISHTHTRV-AFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLT-FLDLSQCQLEQL 190

Query: 227 IPPTIGNLTNLTSLDLSSNQLSGLLPREVGNLKYLDSLSLDGNNLIGSIPPTI--GYLTN 284
            P    +L++L  L++S N    L       L  L  L    N+++ +        + ++
Sbjct: 191 SPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIM-TSKKQELQHFPSS 249

Query: 285 LTSLNLGYNQLS 296
           L  LNL  N  +
Sbjct: 250 LAFLNLTQNDFA 261

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score =  107 bits (270), Expect = 1e-26
 Identities = 51/258 (19%), Positives = 89/258 (34%), Gaps = 30/258 (11%)

Query: 116 NLTHLDLSLNQLSGRLPQEVGNLKNLLSLFLDNNNLTGPIPSTLYHLNQLSNLYLAYNNL 175
           + T +  +   L+  +P  +    +   L L++N L          L QL+ L L+ N L
Sbjct: 8   SGTEIRCNSKGLT-SVPTGI--PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGL 64

Query: 176 VGPLPKEVGNMKNLDSLLLNRNSLTGPIPSTIGYLNLGGKLDLSHNRLDSPIPPTIGNLT 235
                    +     SL                       LDLS N + + +      L 
Sbjct: 65  -SFKGCCSQSDFGTTSLK---------------------YLDLSFNGVIT-MSSNFLGLE 101

Query: 236 NLTSLDLSSNQLSGLLPREV-GNLKYLDSLSLDGNNLIGSIPPTI-GYLTNLTSLNLGYN 293
            L  LD   + L  +    V  +L+ L  L +   +        I   L++L  L +  N
Sbjct: 102 QLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTH-TRVAFNGIFNGLSSLEVLKMAGN 160

Query: 294 QLSSSIPPE-LMNCSQLQNLVLSHNTLSGIVPPEIGNLTHLRQLDLSHNFINGTIPSQLG 352
               +  P+       L  L LS   L  + P    +L+ L+ L++SHN           
Sbjct: 161 SFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYK 220

Query: 353 YIPNISAVDLSKNNLSGV 370
            + ++  +D S N++   
Sbjct: 221 CLNSLQVLDYSLNHIMTS 238

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 99.7 bits (249), Expect = 7e-24
 Identities = 50/238 (21%), Positives = 91/238 (38%), Gaps = 10/238 (4%)

Query: 18  FPNLESIIIPYTLLSGRIPSEIGALSKLEELALPYNSLT--GTIPAEIGSLRNLVELDLS 75
             +   + +    L          L++L +L+L  N L+  G          +L  LDLS
Sbjct: 27  PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLS 86

Query: 76  NNILNGSIPLEFGNLKDLDALRLRGNKLDGLIPSSI-GNLTNLTHLDLSLNQLSGRLPQE 134
            N +  ++   F  L+ L+ L  + + L  +   S+  +L NL +LD+S           
Sbjct: 87  FNGVI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTR-VAFNG 144

Query: 135 V-GNLKNLLSLFLDNNN-LTGPIPSTLYHLNQLSNLYLAYNNLVGPLPKEVGNMKNLDSL 192
           +   L +L  L +  N+     +P     L  L+ L L+   L    P    ++ +L  L
Sbjct: 145 IFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVL 204

Query: 193 LLNRNSLTGPIPSTIGYLNLGGKLDLSHNRLDSPIPPTI--GNLTNLTSLDLSSNQLS 248
            ++ N+           LN    LD S N + +           ++L  L+L+ N  +
Sbjct: 205 NMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMT-SKKQELQHFPSSLAFLNLTQNDFA 261

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 88.1 bits (219), Expect = 8e-20
 Identities = 49/203 (24%), Positives = 84/203 (41%), Gaps = 8/203 (3%)

Query: 2   DNNGNAAELSQLNFTCFPNLESIIIPYTLLSGRIPSEIGALSKLEELALPYNSLTGTIPA 61
            N  +       +     +L+ + + +  +   + S    L +LE L   +++L      
Sbjct: 61  SNGLSFKGCCSQSDFGTTSLKYLDLSFNGVI-TMSSNFLGLEQLEHLDFQHSNLKQMSEF 119

Query: 62  EI-GSLRNLVELDLSNNILNGSIPLEFGNLKDLDALRLRGNK-LDGLIPSSIGNLTNLTH 119
            +  SLRNL+ LD+S+     +    F  L  L+ L++ GN   +  +P     L NLT 
Sbjct: 120 SVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTF 179

Query: 120 LDLSLNQLSGRLPQEV-GNLKNLLSLFLDNNNLTGPIPSTLYHLNQLSNLYLAYNNLVGP 178
           LDLS  QL  +L      +L +L  L + +NN           LN L  L  + N+++  
Sbjct: 180 LDLSQCQLE-QLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMT- 237

Query: 179 LPKEV--GNMKNLDSLLLNRNSL 199
             K+       +L  L L +N  
Sbjct: 238 SKKQELQHFPSSLAFLNLTQNDF 260

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score =  113 bits (284), Expect = 2e-28
 Identities = 60/292 (20%), Positives = 106/292 (36%), Gaps = 24/292 (8%)

Query: 53  NSLTGTIPAEIGSLRNLVELDLSNNILNGSIPLEFGNLKDLDALRLRGNKLDGLIPSSIG 112
            SL  +IP+ +     +  LDLSNN +      +     +L AL L  N ++ +   S  
Sbjct: 41  GSLN-SIPSGLTE--AVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFS 97

Query: 113 NLTNLTHLDLSLNQLSGRLPQEV-GNLKNLLSLFLDNNNLTG-PIPSTLYHLNQLSNLYL 170
           +L +L HLDLS N LS  L       L +L  L L  N        S   HL +L  L +
Sbjct: 98  SLGSLEHLDLSYNYLS-NLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRV 156

Query: 171 AYNNLVGPLPKEV-GNMKNLDSLLLNRNSLTGPIPSTIGYLNLGGKLDLSHNRLDSPIPP 229
              +    + ++    +  L+ L ++ + L    P ++  +     L L   +    +  
Sbjct: 157 GNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHILLLEI 216

Query: 230 TIGNLTNLTSLDLSSNQLSGLLPREVGNLKYLDSLSLDGNNLIGSIPPTIGYLTNLTSLN 289
            +   +++  L+L    L         +   L +   +           +       ++ 
Sbjct: 217 FVDVTSSVECLELRDTDLDTF------HFSELSTGETNS----------LIKKFTFRNVK 260

Query: 290 LGYNQLSSSIPPELMNCSQLQNLVLSHNTLSGIVPPEIGNLTHLRQLDLSHN 341
           +    L   +   L   S L  L  S N L  +       LT L+++ L  N
Sbjct: 261 ITDESL-FQVMKLLNQISGLLELEFSRNQLKSVPDGIFDRLTSLQKIWLHTN 311

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score =  106 bits (267), Expect = 5e-26
 Identities = 55/242 (22%), Positives = 91/242 (37%), Gaps = 15/242 (6%)

Query: 42  LSKLEELALPYNSLTGTIPAEI-GSLRNLVELDLSNNILNGSIPLE-FGNLKDLDALRLR 99
              L+ L L  N +  TI  +   SL +L  LDLS N L  ++    F  L  L  L L 
Sbjct: 75  CVNLQALVLTSNGIN-TIEEDSFSSLGSLEHLDLSYNYL-SNLSSSWFKPLSSLTFLNLL 132

Query: 100 GNKLDGLIPSSI-GNLTNLTHLDLSLNQLSGRLPQEV-GNLKNLLSLFLDNNNLTGPIPS 157
           GN    L  +S+  +LT L  L +       ++ ++    L  L  L +D ++L    P 
Sbjct: 133 GNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPK 192

Query: 158 TLYHLNQLSNLYLAYNNLVGPLPKEVGNMKNLDSLLLNRNSLTGPIPSTIGYLNLGG--- 214
           +L  +  +S+L L     +  L   V    +++ L L    L     S +          
Sbjct: 193 SLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIK 252

Query: 215 -----KLDLSHNRLDSPIPPTIGNLTNLTSLDLSSNQLSGLLPREVGNLKYLDSLSLDGN 269
                 + ++   L   +   +  ++ L  L+ S NQL  +       L  L  + L  N
Sbjct: 253 KFTFRNVKITDESLFQ-VMKLLNQISGLLELEFSRNQLKSVPDGIFDRLTSLQKIWLHTN 311

Query: 270 NL 271
             
Sbjct: 312 PW 313

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 90.9 bits (226), Expect = 2e-20
 Identities = 45/228 (19%), Positives = 87/228 (38%), Gaps = 4/228 (1%)

Query: 165 LSNLYLAYNNLVGPLPKEVGNMKNLDSLLLNRNSLTGPIPSTIGYLNLGGKLDLSHNRLD 224
           + +L L+ N +      ++    NL +L+L  N +      +   L     LDLS+N L 
Sbjct: 54  VKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLS 113

Query: 225 SPIPPTI-GNLTNLTSLDLSSNQLSGLLPREV-GNLKYLDSLSLDGNNLIGSIPP-TIGY 281
           + +  +    L++LT L+L  N    L    +  +L  L  L +   +    I       
Sbjct: 114 N-LSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAG 172

Query: 282 LTNLTSLNLGYNQLSSSIPPELMNCSQLQNLVLSHNTLSGIVPPEIGNLTHLRQLDLSHN 341
           LT L  L +  + L S  P  L +   + +L+L       ++   +   + +  L+L   
Sbjct: 173 LTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDT 232

Query: 342 FINGTIPSQLGYIPNISAVDLSKNNLSGVVPASVRIIPKLIVSENNLE 389
            ++    S+L      S +         +   S+  + KL+   + L 
Sbjct: 233 DLDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQVMKLLNQISGLL 280

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score =  107 bits (269), Expect = 9e-27
 Identities = 58/215 (26%), Positives = 85/215 (39%), Gaps = 9/215 (4%)

Query: 107 IPSSIGNLTNLTHLDLSLNQLSGRLPQEVGNLKNLLSLFLDNNNLTGPIPSTLYHLNQLS 166
           +P  I        + L  N++S          +NL  L+L +N L     +    L  L 
Sbjct: 26  VPVGI--PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLE 83

Query: 167 NLYLAYNNLVGPLPKEV-GNMKNLDSLLLNRNSLTGPIPSTIGYLNLGGKLDLSHNRLDS 225
            L L+ N  +  +       +  L +L L+R  L    P     L     L L  N L +
Sbjct: 84  QLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQA 143

Query: 226 PIPPTI-GNLTNLTSLDLSSNQLSGLLPREVGNLKYLDSLSLDGNNLIGSIPP-TIGYLT 283
            +P     +L NLT L L  N++S +  R    L  LD L L  N  +  + P     L 
Sbjct: 144 -LPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNR-VAHVHPHAFRDLG 201

Query: 284 NLTSLNLGYNQLSSSIPPELM-NCSQLQNLVLSHN 317
            L +L L  N L S++P E +     LQ L L+ N
Sbjct: 202 RLMTLYLFANNL-SALPTEALAPLRALQYLRLNDN 235

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score =  105 bits (265), Expect = 3e-26
 Identities = 58/222 (26%), Positives = 84/222 (37%), Gaps = 6/222 (2%)

Query: 52  YNSLTGTIPAEIGSLRNLVELDLSNNILNGSIPLEFGNLKDLDALRLRGNKLDGLIPSSI 111
              L   +P  I        + L  N ++      F   ++L  L L  N L  +  ++ 
Sbjct: 20  QQGLQ-AVPVGI--PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAF 76

Query: 112 GNLTNLTHLDLSLNQLSGRLPQEV-GNLKNLLSLFLDNNNLTGPIPSTLYHLNQLSNLYL 170
             L  L  LDLS N     +       L  L +L LD   L    P     L  L  LYL
Sbjct: 77  TGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYL 136

Query: 171 AYNNLVGPLPKEV-GNMKNLDSLLLNRNSLTGPIPSTIGYLNLGGKLDLSHNRLDSPIPP 229
             N L   LP +   ++ NL  L L+ N ++         L+   +L L  NR+    P 
Sbjct: 137 QDNALQA-LPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPH 195

Query: 230 TIGNLTNLTSLDLSSNQLSGLLPREVGNLKYLDSLSLDGNNL 271
              +L  L +L L +N LS L    +  L+ L  L L+ N  
Sbjct: 196 AFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPW 237

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 93.5 bits (233), Expect = 8e-22
 Identities = 43/169 (25%), Positives = 70/169 (41%), Gaps = 3/169 (1%)

Query: 215 KLDLSHNRLDSPIPPTIGNLTNLTSLDLSSNQLSGLLPREVGNLKYLDSLSLDGNNLIGS 274
           ++ L  NR+      +     NLT L L SN L+ +       L  L+ L L  N  + S
Sbjct: 36  RIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRS 95

Query: 275 IPP-TIGYLTNLTSLNLGYNQLSSSIPPE-LMNCSQLQNLVLSHNTLSGIVPPEIGNLTH 332
           + P T   L  L +L+L    L   + P      + LQ L L  N L  +      +L +
Sbjct: 96  VDPATFHGLGRLHTLHLDRCGL-QELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGN 154

Query: 333 LRQLDLSHNFINGTIPSQLGYIPNISAVDLSKNNLSGVVPASVRIIPKL 381
           L  L L  N I+         + ++  + L +N ++ V P + R + +L
Sbjct: 155 LTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRL 203

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 87.7 bits (218), Expect = 8e-20
 Identities = 56/207 (27%), Positives = 77/207 (37%), Gaps = 5/207 (2%)

Query: 18  FPNLESIIIPYTLLSGRIPSEIGALSKLEELALPYNSLTGTIPAEI-GSLRNLVELDLSN 76
               + I +    +S    +   A   L  L L  N L   I A     L  L +LDLS+
Sbjct: 31  PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLA-RIDAAAFTGLALLEQLDLSD 89

Query: 77  NILNGSIPLE-FGNLKDLDALRLRGNKLDGLIPSSIGNLTNLTHLDLSLNQLSGRLPQEV 135
           N    S+    F  L  L  L L    L  L P     L  L +L L  N L   LP + 
Sbjct: 90  NAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQ-ALPDDT 148

Query: 136 -GNLKNLLSLFLDNNNLTGPIPSTLYHLNQLSNLYLAYNNLVGPLPKEVGNMKNLDSLLL 194
             +L NL  LFL  N ++         L+ L  L L  N +    P    ++  L +L L
Sbjct: 149 FRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYL 208

Query: 195 NRNSLTGPIPSTIGYLNLGGKLDLSHN 221
             N+L+      +  L     L L+ N
Sbjct: 209 FANNLSALPTEALAPLRALQYLRLNDN 235

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 76.2 bits (188), Expect = 8e-16
 Identities = 38/138 (27%), Positives = 61/138 (44%), Gaps = 6/138 (4%)

Query: 42  LSKLEELALPYNSLTGTIPAEI-GSLRNLVELDLSNNILNGSIPLE-FGNLKDLDALRLR 99
           L +L  L L    L   +   +   L  L  L L +N L  ++P + F +L +L  L L 
Sbjct: 104 LGRLHTLHLDRCGLQ-ELGPGLFRGLAALQYLYLQDNALQ-ALPDDTFRDLGNLTHLFLH 161

Query: 100 GNKLDGLIPSSIGNLTNLTHLDLSLNQLSGRLPQEV-GNLKNLLSLFLDNNNLTGPIPST 158
           GN++  +   +   L +L  L L  N+++  +      +L  L++L+L  NNL+      
Sbjct: 162 GNRISSVPERAFRGLHSLDRLLLHQNRVA-HVHPHAFRDLGRLMTLYLFANNLSALPTEA 220

Query: 159 LYHLNQLSNLYLAYNNLV 176
           L  L  L  L L  N  V
Sbjct: 221 LAPLRALQYLRLNDNPWV 238

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score =  104 bits (261), Expect = 1e-24
 Identities = 75/370 (20%), Positives = 134/370 (36%), Gaps = 51/370 (13%)

Query: 37  SEIGALSKLEELALPYNSLTGTIPAEIGSLRNLVELDLSNNILNGSIPLEFGNLKDLDAL 96
           + I  L+ L +L    N++T     ++    NL  L   +N L     L+   L  L  L
Sbjct: 58  TGIEKLTGLTKLICTSNNITTL---DLSQNTNLTYLACDSNKLTN---LDVTPLTKLTYL 111

Query: 97  RLRGNKLDGLIPSSIGNLTNLTHLDLSLNQLSGRLPQEVGNLKNLLSLFLDNNNLTGPIP 156
               NKL  L    +     LT+L+ + N L+     +V +   L  L    N     + 
Sbjct: 112 NCDTNKLTKL---DVSQNPLLTYLNCARNTLT---EIDVSHNTQLTELDCHLNKKITKLD 165

Query: 157 STLYHLNQLSNLYLAYNNLVGPLPKEVGNMKNLDSLLLNRNSLTGPIPSTIGYLNLGGKL 216
             +    QL+ L  ++N +      +V   K L+ L  + N++T    +    L     L
Sbjct: 166 --VTPQTQLTTLDCSFNKITE---LDVSQNKLLNRLNCDTNNITKLDLNQNIQLT---FL 217

Query: 217 DLSHNRLDSPIPPTIGNLTNLTSLDLSSNQLSGLLPREVGNLKYLD-------------- 262
           D S N+L       +  LT LT  D S N L+ L    +  L  L               
Sbjct: 218 DCSSNKLTE---IDVTPLTQLTYFDCSVNPLTELDVSTLSKLTTLHCIQTDLLEIDLTHN 274

Query: 263 ----SLSLDGNNLIGSIPPTIGYLTNLTSLNLGYNQLSSSIPPELMNCSQLQNLVLSHNT 318
                   +G   I  +   + + T L  L+     ++     +L    +L  L L++  
Sbjct: 275 TQLIYFQAEGCRKIKELD--VTHNTQLYLLDCQAAGITEL---DLSQNPKLVYLYLNNTE 329

Query: 319 LSGIVPPEIGNLTHLRQLDLSHNFINGTIPSQLGYIPNISAVDLSKNNLSGVVPASVRII 378
           L+ +   ++ + T L+ L   +  I     S +G IP ++    ++     +   ++   
Sbjct: 330 LTEL---DVSHNTKLKSLSCVNAHIQ-DFSS-VGKIPALNNNFEAEGQTITMPKETLTNN 384

Query: 379 PKLIVSENNL 388
              I    +L
Sbjct: 385 SLTIAVSPDL 394

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score =  100 bits (251), Expect = 2e-23
 Identities = 65/370 (17%), Positives = 116/370 (31%), Gaps = 40/370 (10%)

Query: 9   ELSQLNFTCFPNLESIIIPYTLLSGRIPSEIGALSKLEELALPYNSLTGTIPAEIGSLRN 68
           +L+ L+ T    L  +      L+     ++     L  L    N+LT     ++     
Sbjct: 96  KLTNLDVTPLTKLTYLNCDTNKLT---KLDVSQNPLLTYLNCARNTLT---EIDVSHNTQ 149

Query: 69  LVELDLSNNILNGSIPLEFGNLKDLDALRLRGNKLDGLIPSSIGNLTNLTHLDLSLNQLS 128
           L ELD   N       L+      L  L    NK+  L    +     L  L+   N ++
Sbjct: 150 LTELDCHLN--KKITKLDVTPQTQLTTLDCSFNKITEL---DVSQNKLLNRLNCDTNNIT 204

Query: 129 GRLPQEVGNLKNLLSLFLDNNNLTGPIPSTLYHLNQLSNLYLAYNNLVGPLPKEVGNMKN 188
                ++     L  L   +N LT      +  L QL+    + N L      +V  +  
Sbjct: 205 K---LDLNQNIQLTFLDCSSNKLTE---IDVTPLTQLTYFDCSVNPLTEL---DVSTLSK 255

Query: 189 LDSLLLNRNSLTGPIPSTIGYLNLGGKLDLSHNRLDSPIPPTIGNLTNLTSLDLSSNQLS 248
           L +L   +  L       I   +    +              + + T L  LD  +  ++
Sbjct: 256 LTTLHCIQTDLL-----EIDLTHNTQLIYFQAEGCRKIKELDVTHNTQLYLLDCQAAGIT 310

Query: 249 GLLPREVGNLKYLDSLSLDGNNLIGSIPPTIGYLTNLTSLNLGYNQLSSSIPPELMNCSQ 308
            L   ++     L  L L+   L   +   + + T L SL+     +       +     
Sbjct: 311 EL---DLSQNPKLVYLYLNNTELT-ELD--VSHNTKLKSLSCVNAHIQDF--SSVGKIPA 362

Query: 309 LQNLVLSHNTLSGIVPPEIGNL-----THLRQLDLSHNFINGTIPSQLGYIPNISAVDLS 363
           L N   +      +    + N           LD   N +   I    G + + +   ++
Sbjct: 363 LNNNFEAEGQTITMPKETLTNNSLTIAVSPDLLDQFGNPM--NIEPGDGGVYDQATNTIT 420

Query: 364 KNNLSGVVPA 373
             NLS   PA
Sbjct: 421 WENLSTDNPA 430

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 99.4 bits (248), Expect = 5e-23
 Identities = 64/346 (18%), Positives = 110/346 (31%), Gaps = 33/346 (9%)

Query: 43  SKLEELALPYNSLTGTIPAEIGSLRNLVELDLSNNILNGSIPLEFGNLKDLDALRLRGNK 102
                       +  T       L  L  LD  N+ +   +      L  L  L    N 
Sbjct: 18  DNFASEVAAAFEMQATDTISEEQLATLTSLDCHNSSIT-DMT-GIEKLTGLTKLICTSNN 75

Query: 103 LDGLIPSSIGNLTNLTHLDLSLNQLSGRLPQEVGNLKNLLSLFLDNNNLTGPIPSTLYHL 162
           +  L    +   TNLT+L    N+L+     +V  L  L  L  D N LT      +   
Sbjct: 76  ITTL---DLSQNTNLTYLACDSNKLTNL---DVTPLTKLTYLNCDTNKLT---KLDVSQN 126

Query: 163 NQLSNLYLAYNNLVGPLPKEVGNMKNLDSLLLNRNSLTGPIPSTIGYLNLGGKLDLSHNR 222
             L+ L  A N L      +V +   L  L  + N     +   +        LD S N+
Sbjct: 127 PLLTYLNCARNTLT---EIDVSHNTQLTELDCHLNKKITKLD--VTPQTQLTTLDCSFNK 181

Query: 223 LDSPIPPTIGNLTNLTSLDLSSNQLSGLLPREVGNLKYLDSLSLDGNNLIGSIPPTIGYL 282
           +       +     L  L+  +N ++ L   ++     L  L    N L   I   +  L
Sbjct: 182 ITE---LDVSQNKLLNRLNCDTNNITKL---DLNQNIQLTFLDCSSNKLT-EID--VTPL 232

Query: 283 TNLTSLNLGYNQLSSSIPPELMNCSQLQNLVLSHNTLSGIVPPEIGNLTHLRQLDLSHNF 342
           T LT  +   N L+     ++   S+L  L      L  I   ++ + T L         
Sbjct: 233 TQLTYFDCSVNPLTE---LDVSTLSKLTTLHCIQTDLLEI---DLTHNTQLIYFQAEGC- 285

Query: 343 INGTIPSQLGYIPNISAVDLSKNNLSGVVPASVRIIPKLIVSENNL 388
                   + +   +  +D     ++ +  +    +  L ++   L
Sbjct: 286 -RKIKELDVTHNTQLYLLDCQAAGITELDLSQNPKLVYLYLNNTEL 330

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score =  104 bits (261), Expect = 1e-24
 Identities = 72/398 (18%), Positives = 126/398 (31%), Gaps = 30/398 (7%)

Query: 4   NGNAAELSQLNFTCFP-----NLESIIIPYTLLSGRIPSEIGALSKLEELALPYNSLTGT 58
           +    + S+      P         + I    +S    S+I +LSKL  L + +N +   
Sbjct: 1   SEFLVDRSKNGLIHVPKDLSQKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYL 60

Query: 59  IPAEIGSLRNLVELDLSNNILNGSIPLEFGNLKDLDALRLRGNKLDGL-IPSSIGNLTNL 117
             +     + L  LDLS+N L     +      +L  L L  N  D L I    GN++ L
Sbjct: 61  DISVFKFNQELEYLDLSHNKLVK---ISCHPTVNLKHLDLSFNAFDALPICKEFGNMSQL 117

Query: 118 THLDLSLNQLSGRLPQEVGNLKNLLSLFLDNNNLTGPIPS---TLYHLNQLSNLYLAYNN 174
             L LS   L       + +L     L +                ++   L  ++     
Sbjct: 118 KFLGLSTTHLEKSSVLPIAHLNISKVLLVLGETYGEKEDPEGLQDFNTESLHIVFPTNKE 177

Query: 175 LVGPLPKEVGNMKNLDSLLLNRNSLTG------PIPSTIGYLNLGGKLDLSHNRLDSPIP 228
               L   V  + NL+   +              I + +        L L++        
Sbjct: 178 FHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILAKLQTNPKLSNLTLNNIETTWNSF 237

Query: 229 PTIGNL---TNLTSLDLSSNQLSGLLPREVG-----NLKYLDSLSLDGNNLIGSIPPTIG 280
             I  L   T +    +S+ +L G L          +LK L    +  +           
Sbjct: 238 IRILQLVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVFGFPQSYIYE 297

Query: 281 YLTNLTSLNLGYNQLSSSIPPELMNCSQLQNLVLSHNTLSGIVPPEIGNLTHLRQLDLSH 340
             +N+   N   +             S   +L  S+N L+  V    G+LT L  L L  
Sbjct: 298 IFSNMNIKNFTVSGTRMVHMLCPSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQM 357

Query: 341 NFINGTIPSQLGYI---PNISAVDLSKNNLSGVVPASV 375
           N +   +           ++  +D+S+N++S       
Sbjct: 358 NQLK-ELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGD 394

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 96.5 bits (240), Expect = 6e-22
 Identities = 55/253 (21%), Positives = 94/253 (37%), Gaps = 7/253 (2%)

Query: 45  LEELALPYNSLTGTIPAEIGSLRNLVELDLSNNILNGSIPLEFGNLKDLDALRLRGNKLD 104
           +  + L              SL+ L    + +++        +    +++      +   
Sbjct: 254 ISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVFGFPQSYIYEIFSNMNIKNFTVSGTR 313

Query: 105 GLIPSSIGNLTNLTHLDLSLNQLSGRLPQEVGNLKNLLSLFLDNNNLT--GPIPSTLYHL 162
            +       ++   HLD S N L+  + +  G+L  L +L L  N L     I      +
Sbjct: 314 MVHMLCPSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQM 373

Query: 163 NQLSNLYLAYNNLVGPLPKEV-GNMKNLDSLLLNRNSLTGPIPSTIGYLNLGGKLDLSHN 221
             L  L ++ N++     K      K+L SL ++ N LT  I   +        LDL  N
Sbjct: 374 KSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRCL--PPRIKVLDLHSN 431

Query: 222 RLDSPIPPTIGNLTNLTSLDLSSNQLSGLLPREVGNLKYLDSLSLDGNNLIGSIPPTIGY 281
           ++ S IP  +  L  L  L+++SNQL  +       L  L  + L  N    S  P I Y
Sbjct: 432 KIKS-IPKQVVKLEALQELNVASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCS-CPRIDY 489

Query: 282 LTNLTSLNLGYNQ 294
           L+   + N    Q
Sbjct: 490 LSRWLNKNSQKEQ 502

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 94.9 bits (236), Expect = 3e-21
 Identities = 63/357 (17%), Positives = 116/357 (32%), Gaps = 28/357 (7%)

Query: 9   ELSQLNFTCFPNLESIIIPYTLLSGRI-PSEIGALSKLEELALPYNSLTGTIPAEIGSLR 67
            L + +     +L    +   L        +   L      +L     T      I  + 
Sbjct: 126 HLEKSSVLPIAHLNISKVLLVLGETYGEKEDPEGLQDFNTESLHIVFPTNKEFHFILDVS 185

Query: 68  NLVELDLSNNILNG-----------SIPLEFGNLKDLDALRLRGNKLDGLIPSSIGNL-- 114
                +L  + +             SI  +      L  L L   +        I  L  
Sbjct: 186 VKTVANLELSNIKCVLEDNKCSYFLSILAKLQTNPKLSNLTLNNIETTWNSFIRILQLVW 245

Query: 115 -TNLTHLDLSLNQLSGRLPQEVG-----NLKNLLSLFLDNNNLTGPIPSTLYHLNQLSNL 168
            T + +  +S  +L G+L          +LK L    + ++    P        + ++  
Sbjct: 246 HTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVFGFPQSYIYEIFSNMNIK 305

Query: 169 YLAYNNLVGPLPKEVGNMKNLDSLLLNRNSLTGPIPSTIGYLNLGGKLDLSHNRLDSPIP 228
               +            +     L  + N LT  +    G+L     L L  N+L   + 
Sbjct: 306 NFTVSGTRMVHMLCPSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKE-LS 364

Query: 229 PTIG---NLTNLTSLDLSSNQLSGLLPREV-GNLKYLDSLSLDGNNLIGSIPPTIGYLTN 284
                   + +L  LD+S N +S    +      K L SL++  N L  +I   +     
Sbjct: 365 KIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRCL--PPR 422

Query: 285 LTSLNLGYNQLSSSIPPELMNCSQLQNLVLSHNTLSGIVPPEIGNLTHLRQLDLSHN 341
           +  L+L  N++ S IP +++    LQ L ++ N L  +       LT L+++ L  N
Sbjct: 423 IKVLDLHSNKIKS-IPKQVVKLEALQELNVASNQLKSVPDGIFDRLTSLQKIWLHTN 478

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score =  104 bits (260), Expect = 2e-24
 Identities = 66/364 (18%), Positives = 130/364 (35%), Gaps = 45/364 (12%)

Query: 45  LEELALPYNSLTGTIPAEIGSLRNLVELDLSNNILNGSIPLEFGNLKDLDALRLRGNKLD 104
           + E       +    P    +    ++ +L    +  ++      L  +D +    + + 
Sbjct: 1   MGETITVSTPIKQIFP--DDAFAETIKDNLKKKSVTDAVTQN--ELNSIDQIIANNSDIK 56

Query: 105 GLIPSSIGNLTNLTHLDLSLNQLSGRLPQEVGNLKNLLSLFLDNNNLTGPIPSTLYHLNQ 164
            +    I  L N+T L L+ N+L+   P  + NLKNL  LFLD N +     S+L  L +
Sbjct: 57  SV--QGIQYLPNVTKLFLNGNKLTDIKP--LTNLKNLGWLFLDENKIK--DLSSLKDLKK 110

Query: 165 LSNLYLAYNNLVGPLPKEVGNMKNLDSLLLNRNSLTGPIPSTIGYLNLGGKLDLSHNRLD 224
           L +L L +N +      ++  + +L  L                       L L +N++ 
Sbjct: 111 LKSLSLEHNGI-----SDINGLVHLPQLE---------------------SLYLGNNKIT 144

Query: 225 SPIPPTIGNLTNLTSLDLSSNQLSGLLPREVGNLKYLDSLSLDGNNLIGSIPPTIGYLTN 284
                 +  LT L +L L  NQ+S ++P  +  L  L +L L   N I  +   +  L N
Sbjct: 145 DITV--LSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLS-KNHISDLRA-LAGLKN 198

Query: 285 LTSLNLGYNQLSSSIPPELMNCSQLQNLVLSHNTLSGIVPPEIGNLTHLRQLDLSHNFIN 344
           L  L L   +  +       N      +  +  +L    P  I +     + ++  +   
Sbjct: 199 LDVLELFSQECLNKPINHQSNLVVPNTVKNTDGSLV--TPEIISDDGDYEKPNVKWHLPE 256

Query: 345 GTIPSQLGYIPNISAVDLSKNNLSGVVPASVRIIPKLIVSENNLELENSTSSENAPPPQA 404
            T      +   ++ +  +K    G V   ++ +  +    +   ++    +        
Sbjct: 257 FTNEVSFIFYQPVT-IGKAKARFHGRVTQPLKEVYTVSYDVDGTVIKTKVEAGTRITAPK 315

Query: 405 KPFK 408
            P K
Sbjct: 316 PPTK 319

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 94.8 bits (235), Expect = 3e-21
 Identities = 60/257 (23%), Positives = 106/257 (41%), Gaps = 18/257 (7%)

Query: 41  ALSKLEELALPYNSLTGTIPAEIGSLRNLVELDLSNNILNGSIPLEFGNLKDLDALRLRG 100
           A ++  +  L   S+T  +      L ++ ++  +N+ +     ++   L ++  L L G
Sbjct: 19  AFAETIKDNLKKKSVTDAVT--QNELNSIDQIIANNSDIKSVQGIQ--YLPNVTKLFLNG 74

Query: 101 NKLDGLIPSSIGNLTNLTHLDLSLNQLSGRLPQEVGNLKNLLSLFLDNNNLTGPIPSTLY 160
           NKL  +    + NL NL  L L  N++      +  +LK L SL L++N ++    + L 
Sbjct: 75  NKLTDI--KPLTNLKNLGWLFLDENKIKDLSSLK--DLKKLKSLSLEHNGIS--DINGLV 128

Query: 161 HLNQLSNLYLAYNNLVGPLPKEVGNMKNLDSLLLNRNSLTGPIPSTIGYLNLGGKLDLSH 220
           HL QL +LYL  N +       +  +  LD+L L  N ++  I    G   L   L LS 
Sbjct: 129 HLPQLESLYLGNNKITDITV--LSRLTKLDTLSLEDNQISD-IVPLAGLTKLQ-NLYLSK 184

Query: 221 NRLDSPIPPTIGNLTNLTSLDLSSNQLSGLLPREVGNLKYLDSLSLDGNNLIGSIPPTIG 280
           N +       +  L NL  L+L S +          NL   +++     +L    P  I 
Sbjct: 185 NHISDLRA--LAGLKNLDVLELFSQECLNKPINHQSNLVVPNTVKNTDGSL--VTPEIIS 240

Query: 281 YLTNLTSLNLGYNQLSS 297
              +    N+ ++    
Sbjct: 241 DDGDYEKPNVKWHLPEF 257

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 69.0 bits (168), Expect = 9e-13
 Identities = 45/223 (20%), Positives = 80/223 (35%), Gaps = 10/223 (4%)

Query: 14  NFTCFPNLESIIIPYTLLSGRIPSEIGALSKLEELALPYNSLTGTIPAEIGSLRNLVELD 73
             T   NL  + +    +   + S +  L KL+ L+L +N ++  I   +  L  L  L 
Sbjct: 82  PLTNLKNLGWLFLDENKIK-DL-SSLKDLKKLKSLSLEHNGIS-DING-LVHLPQLESLY 137

Query: 74  LSNNILNGSIPLEFGNLKDLDALRLRGNKLDGLIPSSIGNLTNLTHLDLSLNQLSGRLPQ 133
           L NN +     L    L  LD L L  N++  +    +  LT L +L LS N +S    +
Sbjct: 138 LGNNKITDITVLS--RLTKLDTLSLEDNQISDI--VPLAGLTKLQNLYLSKNHISD--LR 191

Query: 134 EVGNLKNLLSLFLDNNNLTGPIPSTLYHLNQLSNLYLAYNNLVGPLPKEVGNMKNLDSLL 193
            +  LKNL  L L +        +   +L   + +     +LV P            ++ 
Sbjct: 192 ALAGLKNLDVLELFSQECLNKPINHQSNLVVPNTVKNTDGSLVTPEIISDDGDYEKPNVK 251

Query: 194 LNRNSLTGPIPSTIGYLNLGGKLDLSHNRLDSPIPPTIGNLTN 236
            +    T  +          GK     +   +     +  ++ 
Sbjct: 252 WHLPEFTNEVSFIFYQPVTIGKAKARFHGRVTQPLKEVYTVSY 294

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 98.4 bits (245), Expect = 4e-23
 Identities = 53/252 (21%), Positives = 88/252 (34%), Gaps = 11/252 (4%)

Query: 46  EELALPYNSLTGTIPAEIGSLRNLVELDLSNNILNGSIPLEFGNLKDLDALRLRGNKLDG 105
                  + +T  IP+++   RN +EL      L       F    DL+ + +  N +  
Sbjct: 12  RVFLCQESKVT-EIPSDL--PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLE 68

Query: 106 LIPSSI-GNLTNLTHLDLS-LNQLSGRLPQEVGNLKNLLSLFLDNNNLTGPIPSTLYHLN 163
           +I + +  NL  L  + +   N L    P+   NL NL  L + N  +         H  
Sbjct: 69  VIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSL 128

Query: 164 QLSNLYLAYNNLVGPLPKEV--GNMKNLDSLLLNRNSLTGPIPSTIGYLNLGGKLDLSHN 221
           Q   L +  N  +  + +    G       L LN+N +     S      L       +N
Sbjct: 129 QKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIHNSAFNGTQLDELNLSDNN 188

Query: 222 RLDSPIPPTIGNLTNLTSLDLSSNQLSGLLPREVGNLKYLDSLSLDGNNLIGSIPPTIGY 281
            L+          +    LD+S  ++  L    + NLK L + S      +    PT+  
Sbjct: 189 NLEELPNDVFHGASGPVILDISRTRIHSLPSYGLENLKKLRARSTYNLKKL----PTLEK 244

Query: 282 LTNLTSLNLGYN 293
           L  L   +L Y 
Sbjct: 245 LVALMEASLTYP 256

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 89.9 bits (223), Expect = 4e-20
 Identities = 47/255 (18%), Positives = 90/255 (35%), Gaps = 15/255 (5%)

Query: 94  DALRLRGNKLDGLIPSSIGNLTNLTHLDLSLNQLSGRLPQEVGNLKNLLSLFLDNNNLTG 153
                + +K+   IPS +    N   L   L +L            +L  + +  N++  
Sbjct: 12  RVFLCQESKVTE-IPSDL--PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLE 68

Query: 154 PIPS-TLYHLNQLSNLYLAYNNLVGPLPKEV-GNMKNLDSLLLNRNSLTGPIPSTIGYLN 211
            I +    +L +L  + +   N +  +  E   N+ NL  LL++   +         +  
Sbjct: 69  VIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSL 128

Query: 212 LGGKLDLSHNRLDSPIPPTI--GNLTNLTSLDLSSNQLSGLLPREVGNLKYLDSLSLDGN 269
               LD+  N     I      G       L L+ N +  +      N   LD L+L  N
Sbjct: 129 QKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEI-HNSAFNGTQLDELNLSDN 187

Query: 270 NLIGSIPPTI-GYLTNLTSLNLGYNQLSSSIPPELMNCSQLQNL-VLSHNTLSGIVPPEI 327
           N +  +P  +    +    L++   ++ S +P   +    L+ L   S   L  +  P +
Sbjct: 188 NNLEELPNDVFHGASGPVILDISRTRIHS-LPSYGL--ENLKKLRARSTYNLKKL--PTL 242

Query: 328 GNLTHLRQLDLSHNF 342
             L  L +  L++  
Sbjct: 243 EKLVALMEASLTYPS 257

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 81.8 bits (202), Expect = 2e-17
 Identities = 42/254 (16%), Positives = 78/254 (30%), Gaps = 31/254 (12%)

Query: 116 NLTHLDLSLNQLSGRLPQEVGNLKNLLSLFLDNNNLTGPIPSTLYHLNQLSNLYLAYNNL 175
           +        ++++  +P ++   +N + L      L             L  + ++ N++
Sbjct: 10  SNRVFLCQESKVT-EIPSDL--PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDV 66

Query: 176 VGPLPKEV-GNMKNLDSLLLNRNSLTGPIPSTIGYLNLGGKLDLSHNRLDSPIPPTIGNL 234
           +  +  +V  N+  L  + + +                        N L    P    NL
Sbjct: 67  LEVIEADVFSNLPKLHEIRIEKA-----------------------NNLLYINPEAFQNL 103

Query: 235 TNLTSLDLSSNQLSGLLPREVGNLKYLDSLSLDGNNLIGSIPPTI--GYLTNLTSLNLGY 292
            NL  L +S+  +  L      +      L +  N  I +I      G       L L  
Sbjct: 104 PNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNK 163

Query: 293 NQLSSSIPPELMNCSQLQNLVLSH-NTLSGIVPPEIGNLTHLRQLDLSHNFINGTIPSQL 351
           N +   I     N +QL  L LS  N L  +        +    LD+S   I+      L
Sbjct: 164 NGI-QEIHNSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSYGL 222

Query: 352 GYIPNISAVDLSKN 365
             +  + A      
Sbjct: 223 ENLKKLRARSTYNL 236

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 71.8 bits (176), Expect = 5e-14
 Identities = 37/207 (17%), Positives = 65/207 (31%), Gaps = 8/207 (3%)

Query: 187 KNLDSLLLNRNSLTGPIPSTIGYLNLGGKLDLSHNRLDSPIPP-TIGNLTNLTSLDLS-S 244
           +N   L      L               K+++S N +   I      NL  L  + +  +
Sbjct: 30  RNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKA 89

Query: 245 NQLSGLLPREVGNLKYLDSLSLDGNNLIGSIPP-TIGYLTNLTSLNLGYNQLSSSIPPEL 303
           N L  + P    NL  L  L +     I  +P     +      L++  N    +I    
Sbjct: 90  NNLLYINPEAFQNLPNLQYLLISNTG-IKHLPDVHKIHSLQKVLLDIQDNINIHTIERNS 148

Query: 304 MN--CSQLQNLVLSHNTLSGIVPPEIGNLTHLRQLDLSH-NFINGTIPSQLGYIPNISAV 360
                 +   L L+ N +  I      N T L +L+LS  N +                +
Sbjct: 149 FVGLSFESVILWLNKNGIQEI-HNSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVIL 207

Query: 361 DLSKNNLSGVVPASVRIIPKLIVSENN 387
           D+S+  +  +    +  + KL      
Sbjct: 208 DISRTRIHSLPSYGLENLKKLRARSTY 234

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 97.0 bits (242), Expect = 4e-23
 Identities = 55/230 (23%), Positives = 80/230 (34%), Gaps = 28/230 (12%)

Query: 92  DLDALRLRGNKLDGLIPSSIGNLTNLTHLDLSLNQLSGRLPQEV-GNLKNLLSLFLDNNN 150
               L L  N L  L   S  +   L  LDLS  ++   +      +L +L +L L  N 
Sbjct: 29  STKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQ-TIEDGAYQSLSHLSTLILTGNP 87

Query: 151 LTGPIPSTLYHLNQLSNLYLAYNNLVGPLPKEVGNMKNLDSLLLNRNSLTGPIPSTIGYL 210
           +          L+ L  L     NL       +G++K L  L +  N +           
Sbjct: 88  IQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQ---------- 137

Query: 211 NLGGKLDLSHNRLDSPIPPTIGNLTNLTSLDLSSNQLSGLLPREVGNLKYLDSLSLD--- 267
                           +P    NLTNL  LDLSSN++  +   ++  L  +  L+L    
Sbjct: 138 -------------SFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDL 184

Query: 268 GNNLIGSIPPTIGYLTNLTSLNLGYNQLSSSIPPELMNCSQLQNLVLSHN 317
             N +  I P       L  L L  NQL S         + LQ + L  N
Sbjct: 185 SLNPMNFIQPGAFKEIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTN 234

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 94.7 bits (236), Expect = 3e-22
 Identities = 56/224 (25%), Positives = 88/224 (39%), Gaps = 11/224 (4%)

Query: 52  YNSLTGTIPAEIGSLRNLVELDLSNNILNGSIPLEFGNLKDLDALRLRGNKLDGLIPSSI 111
             +    IP  +    +   LDLS N L       F +  +L  L L   ++  +   + 
Sbjct: 16  ELNFY-KIPDNLPF--STKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAY 72

Query: 112 GNLTNLTHLDLSLNQLSGRLPQEV-GNLKNLLSLFLDNNNLTGPIPSTLYHLNQLSNLYL 170
            +L++L+ L L+ N +   L       L +L  L     NL       + HL  L  L +
Sbjct: 73  QSLSHLSTLILTGNPIQ-SLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNV 131

Query: 171 AYNNL-VGPLPKEVGNMKNLDSLLLNRNSLTGPIPSTIGYL----NLGGKLDLSHNRLDS 225
           A+N +    LP+   N+ NL+ L L+ N +     + +  L     L   LDLS N ++ 
Sbjct: 132 AHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNF 191

Query: 226 PIPPTIGNLTNLTSLDLSSNQLSGLLPREVGNLKYLDSLSLDGN 269
            I P       L  L L +NQL  +       L  L  + L  N
Sbjct: 192 -IQPGAFKEIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTN 234

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 78.5 bits (194), Expect = 1e-16
 Identities = 50/234 (21%), Positives = 86/234 (36%), Gaps = 36/234 (15%)

Query: 140 NLLSLFLDNNNLTGPIPSTLYHLNQLSNLYLAYNNLVGPLPKEVGNMKNLDSLLLNRNSL 199
           +  +L L  N L      + +   +L  L L+   +   +    G  ++L  L       
Sbjct: 29  STKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQT-IE--DGAYQSLSHL------- 78

Query: 200 TGPIPSTIGYLNLGGKLDLSHNRLDSPIPPTI-GNLTNLTSLDLSSNQLSGLLPREVGNL 258
                           L L+ N + S +       L++L  L      L+ L    +G+L
Sbjct: 79  --------------STLILTGNPIQS-LALGAFSGLSSLQKLVAVETNLASLENFPIGHL 123

Query: 259 KYLDSLSLDGNNLIGSIPP--TIGYLTNLTSLNLGYNQLSSSIPPELM-NCSQLQ----N 311
           K L  L++  +NLI S         LTNL  L+L  N++ S I    +    Q+     +
Sbjct: 124 KTLKELNVA-HNLIQSFKLPEYFSNLTNLEHLDLSSNKIQS-IYCTDLRVLHQMPLLNLS 181

Query: 312 LVLSHNTLSGIVPPEIGNLTHLRQLDLSHNFINGTIPSQLGYIPNISAVDLSKN 365
           L LS N ++ I  P       L++L L  N +          + ++  + L  N
Sbjct: 182 LDLSLNPMNFI-QPGAFKEIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTN 234

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 76.5 bits (189), Expect = 5e-16
 Identities = 43/177 (24%), Positives = 77/177 (43%), Gaps = 8/177 (4%)

Query: 219 SHNRLDSPIPPTIGNLTNLTSLDLSSNQLSGLLPREVGNLKYLDSLSLDGNNLIGSIPPT 278
                   IP  +    +  +LDLS N L  L      +   L  L L     I +I   
Sbjct: 15  MELNFYK-IPDNL--PFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCE-IQTIEDG 70

Query: 279 I-GYLTNLTSLNLGYNQLSSSIPPEL-MNCSQLQNLVLSHNTLSGIVPPEIGNLTHLRQL 336
               L++L++L L  N + S +        S LQ LV     L+ +    IG+L  L++L
Sbjct: 71  AYQSLSHLSTLILTGNPIQS-LALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKEL 129

Query: 337 DLSHNFI-NGTIPSQLGYIPNISAVDLSKNNLSGVVPASVRIIPKLIVSENNLELEN 392
           +++HN I +  +P     + N+  +DLS N +  +    +R++ ++ +   +L+L  
Sbjct: 130 NVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSL 186

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 97.1 bits (242), Expect = 7e-23
 Identities = 58/282 (20%), Positives = 113/282 (40%), Gaps = 20/282 (7%)

Query: 65  SLRNLVELDLSNNILNGSIPLEFGNLKDLDALRLRGNKLDGLIPSSIGNLTNLTHLDLSL 124
           +L N +++    + +  ++     +L  +  L   G  +  +    +  L NL  L+L  
Sbjct: 17  ALANAIKIAAGKSNVTDTVTQA--DLDGITTLSAFGTGVTTI--EGVQYLNNLIGLELKD 72

Query: 125 NQLSGRLPQEVGNLKNLLSLFLDNNNLTGPIPSTLYHLNQLSNLYLAYNNLVGPLPKEVG 184
           NQ++      + NL  +  L L  N L     S +  L  +  L L    +    P  + 
Sbjct: 73  NQITD--LAPLKNLTKITELELSGNPLK--NVSAIAGLQSIKTLDLTSTQITDVTP--LA 126

Query: 185 NMKNLDSLLLNRNSLTGPIPSTIGYLNLGGKLDLSHNRLDSPIPPTIGNLTNLTSLDLSS 244
            + NL  L L+ N +T   P  +  L     L + + ++    P  + NL+ LT+L    
Sbjct: 127 GLSNLQVLYLDLNQITNISP--LAGLTNLQYLSIGNAQVSDLTP--LANLSKLTTLKADD 182

Query: 245 NQLSGLLPREVGNLKYLDSLSLDGNNLIGSIPPTIGYLTNLTSLNLGYNQLSSSIPPELM 304
           N++S + P  + +L  L  + L  N  I  + P +   +NL  + L    +++   P   
Sbjct: 183 NKISDISP--LASLPNLIEVHLKNNQ-ISDVSP-LANTSNLFIVTLTNQTITN--QPVFY 236

Query: 305 NCSQLQNLVLSHNTLSGIVPPEIGNLTHLRQLDLSHNFINGT 346
           N + +   V+   + + I P  I +       +L+ N  +  
Sbjct: 237 NNNLVVPNVVKGPSGAPIAPATISDNGTYASPNLTWNLTSFI 278

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 95.9 bits (239), Expect = 1e-22
 Identities = 66/251 (26%), Positives = 109/251 (43%), Gaps = 18/251 (7%)

Query: 137 NLKNLLSLFLDNNNLTGPIPSTLYHLNQLSNLYLAYNNLVGPLPKEVGNMKNLDSLLLNR 196
            L N + +    +N+T     T   L+ ++ L      +     + V  + NL  L L  
Sbjct: 17  ALANAIKIAAGKSNVTDT--VTQADLDGITTLSAFGTGVTTI--EGVQYLNNLIGLELKD 72

Query: 197 NSLTGPIPSTIGYLNLGGKLDLSHNRLDSPIPPTIGNLTNLTSLDLSSNQLSGLLPREVG 256
           N +T   P  +  L    +L+LS N L +     I  L ++ +LDL+S Q++ + P  + 
Sbjct: 73  NQITDLAP--LKNLTKITELELSGNPLKNVSA--IAGLQSIKTLDLTSTQITDVTP--LA 126

Query: 257 NLKYLDSLSLDGNNLIGSIPPTIGYLTNLTSLNLGYNQLSSSIPPELMNCSQLQNLVLSH 316
            L  L  L LD N  I +I P +  LTNL  L++G  Q+S   P  L N S+L  L    
Sbjct: 127 GLSNLQVLYLDLNQ-ITNISP-LAGLTNLQYLSIGNAQVSDLTP--LANLSKLTTLKADD 182

Query: 317 NTLSGIVPPEIGNLTHLRQLDLSHNFINGTIPSQLGYIPNISAVDLSKNNLSGVVPASVR 376
           N +S I    + +L +L ++ L +N I+   P  L    N+  V L+   ++        
Sbjct: 183 NKISDI--SPLASLPNLIEVHLKNNQISDVSP--LANTSNLFIVTLTNQTITNQPVFYNN 238

Query: 377 IIPKLIVSENN 387
            +    V +  
Sbjct: 239 NLVVPNVVKGP 249

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 87.1 bits (216), Expect = 2e-19
 Identities = 66/281 (23%), Positives = 112/281 (39%), Gaps = 20/281 (7%)

Query: 18  FPNLESIIIPYTLLSGRIPSEIGALSKLEELALPYNSLTGTIPAEIGSLRNLVELDLSNN 77
             N   I    + ++         L  +  L+     +T      +  L NL+ L+L +N
Sbjct: 18  LANAIKIAAGKSNVTD--TVTQADLDGITTLSAFGTGVTTIEG--VQYLNNLIGLELKDN 73

Query: 78  ILNGSIPLEFGNLKDLDALRLRGNKLDGLIPSSIGNLTNLTHLDLSLNQLSGRLPQEVGN 137
            +    PL+  NL  +  L L GN L  +  S+I  L ++  LDL+  Q++      +  
Sbjct: 74  QITDLAPLK--NLTKITELELSGNPLKNV--SAIAGLQSIKTLDLTSTQITD--VTPLAG 127

Query: 138 LKNLLSLFLDNNNLTGPIPSTLYHLNQLSNLYLAYNNLVGPLPKEVGNMKNLDSLLLNRN 197
           L NL  L+LD N +T   P  L  L  L  L +    +    P  + N+  L +L  + N
Sbjct: 128 LSNLQVLYLDLNQITNISP--LAGLTNLQYLSIGNAQVSDLTP--LANLSKLTTLKADDN 183

Query: 198 SLTGPIPSTIGYLNLGGKLDLSHNRLDSPIPPTIGNLTNLTSLDLSSNQLSGLLPREVGN 257
            ++  I       NL  ++ L +N++    P  + N +NL  + L++  ++        N
Sbjct: 184 KISD-ISPLASLPNLI-EVHLKNNQISDVSP--LANTSNLFIVTLTNQTITNQPVFYNNN 239

Query: 258 LKYLDSLSLDGNNLIGSIPPTIGYLTNLTSLNLGYNQLSSS 298
           L   + +       I   P TI       S NL +N  S  
Sbjct: 240 LVVPNVVKGPSGAPI--APATISDNGTYASPNLTWNLTSFI 278

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 96.5 bits (240), Expect = 8e-22
 Identities = 58/327 (17%), Positives = 108/327 (33%), Gaps = 29/327 (8%)

Query: 36  PSEIGALSKLEELALPYNSLTGTIPAEI-GSLRNLVELDLSNNILNGSIPLEFGNLKDLD 94
             +I  LS+L  L L +N +  ++   +    ++L  LD+S+N L  +I      +  L 
Sbjct: 69  MPDISFLSELRVLRLSHNRIR-SLDFHVFLFNQDLEYLDVSHNRL-QNIS--CCPMASLR 124

Query: 95  ALRLRGNKLDGL-IPSSIGNLTNLTHLDLSLNQLSGRLPQEVGNLKNLLSLFLDNNNLTG 153
            L L  N  D L +    GNLT LT L LS  +   +L        +L  + LD  +   
Sbjct: 125 HLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFR-QLDLLPVAHLHLSCILLDLVSYHI 183

Query: 154 P---------IPSTLYHLNQLSNLYLAYNNLVGPLPKEVGNMKNLDSLLLNRNSLTGPIP 204
                       +T+ HL    N   +    +         + N+    LN  +    + 
Sbjct: 184 KGGETESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIK---LNDENCQRLMT 240

Query: 205 STIGYLNLGGKLDLSHNRLDSPIPPTIGNL-----TNLTSLDLSSNQLSGLLPREVGN-- 257
                      L+++   +++    ++          +  L++ +  ++  + RE     
Sbjct: 241 FLSELTRGPTLLNVTLQHIETTWKCSVKLFQFFWPRPVEYLNIYNLTITERIDREEFTYS 300

Query: 258 ---LKYLDSLSLDGNNLIGSIPPTIGYLTNLTSLNLGYNQLSSSIPPELMNCSQLQNLVL 314
              LK L    +     + S          +    L  +           + S    L  
Sbjct: 301 ETALKSLMIEHVKNQVFLFSKEALYSVFAEMNIKMLSISDTPFIHMVCPPSPSSFTFLNF 360

Query: 315 SHNTLSGIVPPEIGNLTHLRQLDLSHN 341
           + N  +  V      L  L+ L L  N
Sbjct: 361 TQNVFTDSVFQGCSTLKRLQTLILQRN 387

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 92.2 bits (229), Expect = 2e-20
 Identities = 49/238 (20%), Positives = 93/238 (39%), Gaps = 13/238 (5%)

Query: 42  LSKLEELALPYNSLTGTIPAEIG-----SLRNLVELDLSNNILNGSIPLEFGNLKDLDAL 96
              +E L +   ++T  I  E       +L++L+   + N +   S    +    +++  
Sbjct: 275 PRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAEMNIK 334

Query: 97  RLRGNKLDGLIPSSIGNLTNLTHLDLSLNQLSGRLPQEVGNLKNLLSLFLDNNNLTGPIP 156
            L  +    +      + ++ T L+ + N  +  + Q    LK L +L L  N L     
Sbjct: 335 MLSISDTPFIHMVCPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKN-FF 393

Query: 157 STLYHLNQLSNLYLAYNNLV----GPLPKEVGNMKNLDSLLLNRNSLTGPIPSTIGYLNL 212
                   +S+L     +L         +     +++  L L+ N LTG +   +    +
Sbjct: 394 KVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTGSVFRCLP-PKV 452

Query: 213 GGKLDLSHNRLDSPIPPTIGNLTNLTSLDLSSNQLSGLLPREVGNLKYLDSLSLDGNN 270
              LDL +NR+ S IP  + +L  L  L+++SNQL  +       L  L  + L  N 
Sbjct: 453 -KVLDLHNNRIMS-IPKDVTHLQALQELNVASNQLKSVPDGVFDRLTSLQYIWLHDNP 508

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 91.1 bits (226), Expect = 5e-20
 Identities = 61/352 (17%), Positives = 124/352 (35%), Gaps = 25/352 (7%)

Query: 35  IPSEIGALSKLEELALPYNSLTGTIPAEIGSLRNLVELDLSNNILNGSIPLE-FGNLKDL 93
           +P ++    + + L+L  NS++     +I  L  L  L LS+N +  S+    F   +DL
Sbjct: 46  VPKDL--PPRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIR-SLDFHVFLFNQDL 102

Query: 94  DALRLRGNKLDGLIPSSIGNLTNLTHLDLSLNQL-SGRLPQEVGNLKNLLSLFLDNNNLT 152
           + L +  N+L  +   S   + +L HLDLS N      + +E GNL  L  L L      
Sbjct: 103 EYLDVSHNRLQNI---SCCPMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFR 159

Query: 153 GPIPSTLYHLNQLSNLYLAYNNLVGPLPKEVGNMKNLDSLLLNRNSLTGP------IPST 206
                 + HL+    L    +  +     E   + N   L L  +  +          + 
Sbjct: 160 QLDLLPVAHLHLSCILLDLVSYHIKGGETESLQIPNTTVLHLVFHPNSLFSVQVNMSVNA 219

Query: 207 IGYLNLGGKLDLSHNRLDSPIPPTIGNLTNLTSLDLSSNQLSGLLPREVGNLKY-----L 261
           +G+L L   + L+       +          T L+++   +       V   ++     +
Sbjct: 220 LGHLQLSN-IKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWKCSVKLFQFFWPRPV 278

Query: 262 DSLSLDGNNLIGSIPPTIG-----YLTNLTSLNLGYNQLSSSIPPELMNCSQLQNLVLSH 316
           + L++    +   I           L +L   ++       S        +++   +LS 
Sbjct: 279 EYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAEMNIKMLSI 338

Query: 317 NTLSGIVPPEIGNLTHLRQLDLSHNFINGTIPSQLGYIPNISAVDLSKNNLS 368
           +    I      + +    L+ + N    ++      +  +  + L +N L 
Sbjct: 339 SDTPFIHMVCPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLK 390

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 88.0 bits (218), Expect = 6e-19
 Identities = 61/372 (16%), Positives = 127/372 (34%), Gaps = 28/372 (7%)

Query: 6   NAAELSQLNFTCFPNLESIIIPYTLLSGRIPS---EIGALSKLEELALPYNSLTGTIPAE 62
           +AA+  QL+     +L    I   L+S  I     E   +     L L ++  +      
Sbjct: 154 SAAKFRQLDLLPVAHLHLSCILLDLVSYHIKGGETESLQIPNTTVLHLVFHPNSLFSVQV 213

Query: 63  IGSLRNLVELDLSNNILNGSIPLEFGNLKDLDALRLRGNKLDGLIPSSIGNLTNLTHLDL 122
             S+  L  L LSN  LN                                 L N+T   +
Sbjct: 214 NMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPT--------------LLNVTLQHI 259

Query: 123 SLNQLSGRLPQEVGNLKNLLSLFLDNNNLTGPIPSTLYHLNQLSNLYLAYNNLVGP---- 178
                      +    + +  L + N  +T  I    +  ++ +   L   ++       
Sbjct: 260 ETTWKCSVKLFQFFWPRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVFLF 319

Query: 179 LPKEVGN-MKNLDSLLLNRNSLTGPIPSTIGYLNLGGKLDLSHNRLDSPIPPTIGNLTNL 237
             + + +    ++  +L+ +             +    L+ + N     +      L  L
Sbjct: 320 SKEALYSVFAEMNIKMLSISDTPFIHMVCPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRL 379

Query: 238 TSLDLSSNQLSGL--LPREVGNLKYLDSLSLDGNNL-IGSIPPTIGYLTNLTSLNLGYNQ 294
            +L L  N L     +     N+  L++L +  N+L   +   T  +  ++  LNL  N 
Sbjct: 380 QTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNM 439

Query: 295 LSSSIPPELMNCSQLQNLVLSHNTLSGIVPPEIGNLTHLRQLDLSHNFINGTIPSQLGYI 354
           L+ S+   L    +++ L L +N +  I P ++ +L  L++L+++ N +          +
Sbjct: 440 LTGSVFRCLP--PKVKVLDLHNNRIMSI-PKDVTHLQALQELNVASNQLKSVPDGVFDRL 496

Query: 355 PNISAVDLSKNN 366
            ++  + L  N 
Sbjct: 497 TSLQYIWLHDNP 508

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 65.3 bits (159), Expect = 1e-11
 Identities = 39/179 (21%), Positives = 66/179 (36%), Gaps = 5/179 (2%)

Query: 216 LDLSHNRLDSPIPPTIGNLTNLTSLDLSSNQLSGLLPREVGNLKYLDSLSLDGNNLIGSI 275
           L LS N +     P I  L+ L  L LS N++  L        + L+ L +  N L  +I
Sbjct: 57  LSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHNRL-QNI 115

Query: 276 PPTIGYLTNLTSLNLGYNQLSS-SIPPELMNCSQLQNLVLSHNTLSGIVPPEIGNL-THL 333
                 + +L  L+L +N      +  E  N ++L  L LS      +    + +L    
Sbjct: 116 SC--CPMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQLDLLPVAHLHLSC 173

Query: 334 RQLDLSHNFINGTIPSQLGYIPNISAVDLSKNNLSGVVPASVRIIPKLIVSENNLELEN 392
             LDL    I G     L          +   N    V  ++ +     +  +N++L +
Sbjct: 174 ILLDLVSYHIKGGETESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLND 232

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 90.4 bits (225), Expect = 2e-21
 Identities = 40/186 (21%), Positives = 75/186 (40%), Gaps = 10/186 (5%)

Query: 137 NLKNLLSLFLDNNNLTGPIPSTLYHLNQLSNLYLAYNNLVGPLPKEVGNMKNLDSLLLNR 196
             K  L+  L  ++      +    +N L+ + LA  N+       +    N+  L +N 
Sbjct: 21  TFKAYLNGLLGQSSTANITEA---QMNSLTYITLANINVTDL--TGIEYAHNIKDLTINN 75

Query: 197 NSLTGPIPSTIGYLNLGGKLDLSHNRLDSPIPPTIGNLTNLTSLDLSSNQLSGLLPREVG 256
              T    + I  L+   +L +    + S   P +  LT+LT LD+S +     +  ++ 
Sbjct: 76  IHATNY--NPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKIN 133

Query: 257 NLKYLDSLSLDGNNLIGSIPPTIGYLTNLTSLNLGYNQLSSSIPPELMNCSQLQNLVLSH 316
            L  ++S+ L  N  I  I P +  L  L SLN+ ++ +       + +  +L  L    
Sbjct: 134 TLPKVNSIDLSYNGAITDIMP-LKTLPELKSLNIQFDGVHDYRG--IEDFPKLNQLYAFS 190

Query: 317 NTLSGI 322
            T+ G 
Sbjct: 191 QTIGGK 196

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 81.5 bits (202), Expect = 2e-18
 Identities = 28/208 (13%), Positives = 67/208 (32%), Gaps = 31/208 (14%)

Query: 43  SKLEELALPYNSLTGTIPAEIGSLRNLVELDLSNNILNGSIPLEFGNLKDLDALRLRGNK 102
           S  +         + T       + +L  + L+N  +     +E     ++  L +    
Sbjct: 20  STFKAYLNGLLGQSSTANITEAQMNSLTYITLANINVTDLTGIE--YAHNIKDLTINNIH 77

Query: 103 LDGLIPSSIGNLTNLTHLDLSLNQLSGRLPQEVGNLKNLLSLFLDNNNLTGPIPSTLYHL 162
                 + I  L+NL  L +    ++      +  L +L  L + ++     I + +  L
Sbjct: 78  ATNY--NPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTL 135

Query: 163 NQLSNLYLAYNNLVGPLPKEVGNMKNLDSLLLNRNSLTGPIPSTIGYLNLGGKLDLSHNR 222
            +++++ L+YN  +  +   +  +  L S                        L++  + 
Sbjct: 136 PKVNSIDLSYNGAITDI-MPLKTLPELKS------------------------LNIQFDG 170

Query: 223 LDSPIPPTIGNLTNLTSLDLSSNQLSGL 250
           +       I +   L  L   S  + G 
Sbjct: 171 VHDYRG--IEDFPKLNQLYAFSQTIGGK 196

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 80.0 bits (198), Expect = 9e-18
 Identities = 33/183 (18%), Positives = 71/183 (38%), Gaps = 7/183 (3%)

Query: 19  PNLESIIIPYTLLSGRIPSEIGALSKLEELALPYNSLTGTIPAEIGSLRNLVELDLSNNI 78
              ++ +      S         ++ L  + L   ++T      I    N+ +L ++N  
Sbjct: 20  STFKAYLNGLLGQSSTANITEAQMNSLTYITLANINVTDLTG--IEYAHNIKDLTINNIH 77

Query: 79  LNGSIPLEFGNLKDLDALRLRGNKLDGLIPSSIGNLTNLTHLDLSLNQLSGRLPQEVGNL 138
                P+    L +L+ LR+ G  +      ++  LT+LT LD+S +     +  ++  L
Sbjct: 78  ATNYNPIS--GLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTL 135

Query: 139 KNLLSLFLDNNNLTGPIPSTLYHLNQLSNLYLAYNNLVGPLPKEVGNMKNLDSLLLNRNS 198
             + S+ L  N     I   L  L +L +L + ++ +       + +   L+ L     +
Sbjct: 136 PKVNSIDLSYNGAITDI-MPLKTLPELKSLNIQFDGVHDYRG--IEDFPKLNQLYAFSQT 192

Query: 199 LTG 201
           + G
Sbjct: 193 IGG 195

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 77.3 bits (191), Expect = 8e-17
 Identities = 28/143 (19%), Positives = 62/143 (43%), Gaps = 5/143 (3%)

Query: 230 TIGNLTNLTSLDLSSNQLSGLLPREVGNLKYLDSLSLDGNNLIGSIPPTIGYLTNLTSLN 289
           T   + +LT + L++  ++ L    +     +  L+++  +   +  P I  L+NL  L 
Sbjct: 39  TEAQMNSLTYITLANINVTDLTG--IEYAHNIKDLTINNIH-ATNYNP-ISGLSNLERLR 94

Query: 290 LGYNQLSSSIPPELMNCSQLQNLVLSHNTLSGIVPPEIGNLTHLRQLDLSHNFINGTIPS 349
           +    ++S   P L   + L  L +SH+     +  +I  L  +  +DLS+N     I  
Sbjct: 95  IMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDI-M 153

Query: 350 QLGYIPNISAVDLSKNNLSGVVP 372
            L  +P + ++++  + +     
Sbjct: 154 PLKTLPELKSLNIQFDGVHDYRG 176

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 70.8 bits (174), Expect = 2e-14
 Identities = 26/135 (19%), Positives = 58/135 (42%), Gaps = 7/135 (5%)

Query: 233 NLTNLTSLDLSSNQLSGLLPREVGNLKYLDSLSLDGNNLIGSIPPTIGYLTNLTSLNLGY 292
                 +  L  +  + +   ++ +L Y+       N  +  +   I Y  N+  L +  
Sbjct: 21  TFKAYLNGLLGQSSTANITEAQMNSLTYITL----ANINVTDLTG-IEYAHNIKDLTINN 75

Query: 293 NQLSSSIPPELMNCSQLQNLVLSHNTLSGIVPPEIGNLTHLRQLDLSHNFINGTIPSQLG 352
              ++  P  +   S L+ L +    ++    P +  LT L  LD+SH+  + +I +++ 
Sbjct: 76  IHATNYNP--ISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKIN 133

Query: 353 YIPNISAVDLSKNNL 367
            +P ++++DLS N  
Sbjct: 134 TLPKVNSIDLSYNGA 148

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 68.1 bits (167), Expect = 1e-13
 Identities = 26/140 (18%), Positives = 54/140 (38%), Gaps = 5/140 (3%)

Query: 14  NFTCFPNLESIIIPYTLLSGRIPSEIGALSKLEELALPYNSLTGTIPAEIGSLRNLVELD 73
                 N++ + I     +    + I  LS LE L +    +T      +  L +L  LD
Sbjct: 61  GIEYAHNIKDLTINNIHATN--YNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLD 118

Query: 74  LSNNILNGSIPLEFGNLKDLDALRLRGNKLDGLIPSSIGNLTNLTHLDLSLNQLSGRLPQ 133
           +S++  + SI  +   L  ++++ L  N     I   +  L  L  L++  + +      
Sbjct: 119 ISHSAHDDSILTKINTLPKVNSIDLSYNGAITDI-MPLKTLPELKSLNIQFDGVHDYRG- 176

Query: 134 EVGNLKNLLSLFLDNNNLTG 153
            + +   L  L+  +  + G
Sbjct: 177 -IEDFPKLNQLYAFSQTIGG 195

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 52.3 bits (126), Expect = 3e-08
 Identities = 19/125 (15%), Positives = 51/125 (40%), Gaps = 7/125 (5%)

Query: 257 NLKYLDSLSLDGNNLIGSIPPTIGYLTNLTSLNLGYNQLSSSIPPELMNCSQLQNLVLSH 316
             K   +  L G +   +I  T   + +LT + L    ++      +     +++L +++
Sbjct: 21  TFKAYLNGLL-GQSSTANI--TEAQMNSLTYITLANINVTDLTG--IEYAHNIKDLTINN 75

Query: 317 NTLSGIVPPEIGNLTHLRQLDLSHNFINGTIPSQLGYIPNISAVDLSKNNLSGVVPASVR 376
              +   P  I  L++L +L +    +       L  + +++ +D+S +     +   + 
Sbjct: 76  IHATNYNP--ISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKIN 133

Query: 377 IIPKL 381
            +PK+
Sbjct: 134 TLPKV 138

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 92.1 bits (228), Expect = 2e-20
 Identities = 44/237 (18%), Positives = 72/237 (30%), Gaps = 34/237 (14%)

Query: 108 PSSIGNLTNLTHLDLSLNQLSGRLPQEVGNLKNLLSLFLDNNNLTGPIPSTLYHLNQLSN 167
                    L   +LS+ + +  L  E+ + K L  L  +N      I   +  L+ L  
Sbjct: 342 CRDSATDEQLFRCELSVEKST-VLQSELESCKELQELEPENKWCLLTIILLMRALDPLLY 400

Query: 168 LYLAYNNLVGPLPKEVGNMKNLDSLLLNRNSLTGPIPSTIGYLNLGGKLDLSHNRLDSPI 227
                         +  +      L   R+                  L L+H  L    
Sbjct: 401 EKETLQYFST---LKAVDPMRAAYLDDLRSKFLLENSVLKMEYADVRVLHLAHKDLTVL- 456

Query: 228 PPTIGNLTNLTSLDLSSNQLSGLLPREVGNLKYLDSLSLDGNNLIGSIPPTIGYLTNLTS 287
              +  L  +T LDLS N+L                          ++PP +  L  L  
Sbjct: 457 -CHLEQLLLVTHLDLSHNRLR-------------------------ALPPALAALRCLEV 490

Query: 288 LNLGYNQLSSSIPPELMNCSQLQNLVLSHNTLSGI-VPPEIGNLTHLRQLDLSHNFI 343
           L    N L +     + N  +LQ L+L +N L        + +   L  L+L  N +
Sbjct: 491 LQASDNALEN--VDGVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSL 545

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 75.2 bits (184), Expect = 8e-15
 Identities = 33/162 (20%), Positives = 57/162 (35%), Gaps = 6/162 (3%)

Query: 8   AELSQLNFTCFPNLESIIIPYTLLSGRIPSEIGALSKLEELALPYNSLTGTIPAEIGSLR 67
              S L          +    +             + +  L L +  LT  +   +  L 
Sbjct: 406 QYFSTLKAVDPMRAAYLDDLRSKFLLENSVLKMEYADVRVLHLAHKDLT-VLC-HLEQLL 463

Query: 68  NLVELDLSNNILNGSIPLEFGNLKDLDALRLRGNKLDGLIPSSIGNLTNLTHLDLSLNQL 127
            +  LDLS+N L  ++P     L+ L+ L+   N L+ +    + NL  L  L L  N+L
Sbjct: 464 LVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALENV--DGVANLPRLQELLLCNNRL 520

Query: 128 SG-RLPQEVGNLKNLLSLFLDNNNLTGPIPSTLYHLNQLSNL 168
                 Q + +   L+ L L  N+L             L ++
Sbjct: 521 QQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSV 562

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 67.9 bits (165), Expect = 2e-12
 Identities = 44/235 (18%), Positives = 69/235 (29%), Gaps = 52/235 (22%)

Query: 36  PSEIGALSKLEELALPYNSLTGTIPAEIGSLRNLVELDLSNNILNGSIPLEFGNLKDLDA 95
             +     +L    L     T  + +E+ S + L EL+  N     +I L    L  L  
Sbjct: 342 CRDSATDEQLFRCELSVEKST-VLQSELESCKELQELEPENKWCLLTIILLMRALDPLLY 400

Query: 96  LRLRGNKLDGL---------------------IPSSIGNLTNLTHLDLSLNQLSGRLPQE 134
            +        L                              ++  L L+   L+  L   
Sbjct: 401 EKETLQYFSTLKAVDPMRAAYLDDLRSKFLLENSVLKMEYADVRVLHLAHKDLT-VLC-H 458

Query: 135 VGNLKNLLSLFLDNNNLTGPIPSTLYHLNQLSNLYLAYNNLVGPLPKEVGNMKNLDSLLL 194
           +  L  +  L L +N L   +P  L  L  L  L  + N L     + V  + NL  L  
Sbjct: 459 LEQLLLVTHLDLSHNRLRA-LPPALAALRCLEVLQASDNAL-----ENVDGVANLPRLQ- 511

Query: 195 NRNSLTGPIPSTIGYLNLGGKLDLSHNRLDS-PIPPTIGNLTNLTSLDLSSNQLS 248
                               +L L +NRL        + +   L  L+L  N L 
Sbjct: 512 --------------------ELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLC 546

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 64.0 bits (155), Expect = 3e-11
 Identities = 41/256 (16%), Positives = 83/256 (32%), Gaps = 26/256 (10%)

Query: 134 EVGNLKNLLSLFLDNNNLTGPIPSTLYHLNQLSNLYLAYNNLVGPLPKEVGNMKNLDSLL 193
            V   +  LS+        G    TL  +   + L + +    G        + +L +  
Sbjct: 249 HVSREEACLSVCFSRPLTVGSRMGTLLLMVDEAPLSVEWRTPDGRNRPSHVWLCDLPAAS 308

Query: 194 LNRNSLTGPIPSTIGYLNLGGKLDLSHNRLDSPIPPTIGNLTNLTSLDLSSNQLSGLLPR 253
           LN               +   +  L  +R +            L   +LS  + + +L  
Sbjct: 309 LNDQLPQHTFRVIWTGSDSQKECVLLKDRPECW-CRDSATDEQLFRCELSVEKST-VLQS 366

Query: 254 EVGNLKYLDSLSLDGN-------------NLIGSIPPTIGYLTNLTSLN--------LGY 292
           E+ + K L  L  +               + +     T+ Y + L +++           
Sbjct: 367 ELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDDLR 426

Query: 293 NQLSSSIPPELMNCSQLQNLVLSHNTLSGIVPPEIGNLTHLRQLDLSHNFINGTIPSQLG 352
           ++         M  + ++ L L+H  L+ +    +  L  +  LDLSHN +   +P  L 
Sbjct: 427 SKFLLENSVLKMEYADVRVLHLAHKDLTVL--CHLEQLLLVTHLDLSHNRLR-ALPPALA 483

Query: 353 YIPNISAVDLSKNNLS 368
            +  +  +  S N L 
Sbjct: 484 ALRCLEVLQASDNALE 499

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 86.9 bits (215), Expect = 3e-19
 Identities = 52/275 (18%), Positives = 85/275 (30%), Gaps = 22/275 (8%)

Query: 112 GNLTNLTHLDLSLNQLSGRLPQEVGNLKNLLSLFLDNNNLTGPIPSTLYHL---NQLSNL 168
           G  +    L     +       ++    +L  L +    +   I      +   + L  L
Sbjct: 41  GGRSLEYLLKRVDTEADLGQFTDIIKSLSLKRLTVRAARIPSRILFGALRVLGISGLQEL 100

Query: 169 YLAYNNLVGPLPKEVGN--MKNLDSLLLNRNSLTGPIPSTIGYLNLGG----KLDLSHNR 222
            L    + G  P  +      +L+ L L   S                     L ++   
Sbjct: 101 TLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAH 160

Query: 223 LDSPIPPTIGNLTNLTSLDLSSNQLSG-------LLPREVGNLKYLDSLSLDGNNLIGSI 275
             +     +     L++LDLS N   G       L P +   L+ L   +       G  
Sbjct: 161 SLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVC 220

Query: 276 PPTIGYLTNLTSLNLGYNQLSSSIPPELM-NCSQLQNLVLSHNTLSGIVPPEIGNLTHLR 334
                    L  L+L +N L  +         SQL +L LS   L   VP  +     L 
Sbjct: 221 SALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLKQ-VPKGL--PAKLS 277

Query: 335 QLDLSHNFINGTIPSQLGYIPNISAVDLSKNNLSG 369
            LDLS+N ++   PS    +P +  + L  N    
Sbjct: 278 VLDLSYNRLD-RNPSPDE-LPQVGNLSLKGNPFLD 310

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 84.2 bits (208), Expect = 3e-18
 Identities = 53/227 (23%), Positives = 76/227 (33%), Gaps = 19/227 (8%)

Query: 37  SEIGALSKLEELALPYNSLTGTIPAEIGSL--RNLVELDLSNNILNGSIP----LEFGNL 90
             +  +S L+EL L    +TGT P  +      +L  L+L N            L+    
Sbjct: 89  LRVLGISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATRDAWLAELQQWLK 148

Query: 91  KDLDALRLRGNKLDGLIPSSIGNLTNLTHLDLSLNQLSGRLPQE----VGNLKNLLSLFL 146
             L  L +            +     L+ LDLS N   G               L  L L
Sbjct: 149 PGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLAL 208

Query: 147 DNNNLT---GPIPSTLYHLNQLSNLYLAYNNLVGPLPKEV-GNMKNLDSLLLNRNSLTGP 202
            N  +    G   +      QL  L L++N+L              L+SL L+   L   
Sbjct: 209 RNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLKQV 268

Query: 203 IPSTIGYLNLGGKLDLSHNRLDSPIPPTIGNLTNLTSLDLSSNQLSG 249
                  L+    LDLS+NRLD    P+   L  + +L L  N    
Sbjct: 269 PKGLPAKLS---VLDLSYNRLDR--NPSPDELPQVGNLSLKGNPFLD 310

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 81.1 bits (200), Expect = 3e-17
 Identities = 54/296 (18%), Positives = 90/296 (30%), Gaps = 44/296 (14%)

Query: 64  GSLRNLVELDLSNNILNGSIPLEFGNLKDLDALRLRGNKLDGLIPSS---IGNLTNLTHL 120
           G       L   +   +     +      L  L +R  ++   I      +  ++ L  L
Sbjct: 41  GGRSLEYLLKRVDTEADLGQFTDIIKSLSLKRLTVRAARIPSRILFGALRVLGISGLQEL 100

Query: 121 DLSLNQLSGRLPQEVGNL--KNLLSLFLDNNNLTGPIPSTL----YHLNQLSNLYLAYNN 174
            L   +++G  P  +      +L  L L N +             +    L  L +A  +
Sbjct: 101 TLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAH 160

Query: 175 LVGPLPKEVGNMKNLDSLLLNRNSLTGPIPSTIGYLNLGG----KLDLSHNRLDS---PI 227
            +    ++V     L +L L+ N   G          L       L L +  +++     
Sbjct: 161 SLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVC 220

Query: 228 PPTIGNLTNLTSLDLSSNQLSGLLPREVGNLKYLDSLSLDGNNLIGSIPPTIGYLTNLTS 287
                    L  LDLS N L                             P+  + + L S
Sbjct: 221 SALAAARVQLQGLDLSHNSLRDAAG-----------------------APSCDWPSQLNS 257

Query: 288 LNLGYNQLSSSIPPELMNCSQLQNLVLSHNTLSGIVPPEIGNLTHLRQLDLSHNFI 343
           LNL +  L   +P  L   ++L  L LS+N L     P    L  +  L L  N  
Sbjct: 258 LNLSFTGL-KQVPKGLP--AKLSVLDLSYNRLDRN--PSPDELPQVGNLSLKGNPF 308

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 79.9 bits (197), Expect = 7e-17
 Identities = 57/276 (20%), Positives = 86/276 (31%), Gaps = 22/276 (7%)

Query: 40  GALSKLEELALPYNSLTGTIPAEIGSLRNLVELDLSNNILNGSIP---LEFGNLKDLDAL 96
           G  S    L             +I    +L  L +    +   I    L    +  L  L
Sbjct: 41  GGRSLEYLLKRVDTEADLGQFTDIIKSLSLKRLTVRAARIPSRILFGALRVLGISGLQEL 100

Query: 97  RLRGNKLDGLIPSSIGNLTNLTHLDLSLNQLS-GRLPQEVGNLKNLL-----SLFLDNNN 150
            L   ++ G  P  +   T      L+L  +S       +  L+  L      L +   +
Sbjct: 101 TLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAH 160

Query: 151 LTGPIPSTLYHLNQLSNLYLAYNNLVGPLPKE----VGNMKNLDSLLLNRN---SLTGPI 203
                   +     LS L L+ N  +G               L  L L      + +G  
Sbjct: 161 SLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVC 220

Query: 204 PSTIGYLNLGGKLDLSHNRL-DSPIPPTIGNLTNLTSLDLSSNQLSGLLPREVGNLKYLD 262
            +          LDLSHN L D+   P+    + L SL+LS   L  +       L  LD
Sbjct: 221 SALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLKQVPKGLPAKLSVLD 280

Query: 263 SLSLDGNNLIGSIPPTIGYLTNLTSLNLGYNQLSSS 298
            LS    N +   P     L  + +L+L  N    S
Sbjct: 281 -LS---YNRLDRNPSPDE-LPQVGNLSLKGNPFLDS 311

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 61.5 bits (149), Expect = 9e-11
 Identities = 41/228 (17%), Positives = 75/228 (32%), Gaps = 23/228 (10%)

Query: 184 GNMKNLDSLLLNRNSLTGP--IPSTIGYLNLGGKLDLSHNRLDSPIPPT---IGNLTNLT 238
           G  ++L+ LL   ++          I  L+L  +L +   R+ S I      +  ++ L 
Sbjct: 40  GGGRSLEYLLKRVDTEADLGQFTDIIKSLSLK-RLTVRAARIPSRILFGALRVLGISGLQ 98

Query: 239 SLDLSSNQLSGLLPREVGNLKYLDSLSLDGNNLIGSIPPTI------GYLTNLTSLNLGY 292
            L L + +++G  P  +      D   L+  N+  +                L  L++  
Sbjct: 99  ELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQ 158

Query: 293 NQLSSSIPPELMNCSQLQNLVLSHNTLSGIVPPEI----GNLTHLRQLDLSHNFIN---G 345
               +    ++     L  L LS N   G               L+ L L +  +    G
Sbjct: 159 AHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSG 218

Query: 346 TIPSQLGYIPNISAVDLSKNNLSGVVPASVRIIPK----LIVSENNLE 389
              +       +  +DLS N+L     A     P     L +S   L+
Sbjct: 219 VCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLK 266

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 44.5 bits (105), Expect = 3e-05
 Identities = 30/162 (18%), Positives = 58/162 (35%), Gaps = 6/162 (3%)

Query: 237 LTSLDLSSNQLSGLLPREVGNLKYLDSLSLDGNNLIGSIPPTIGYLTNLTSLNLGYNQLS 296
           L  +D  ++        +  +LK L   +    + I      +  ++ L  L L   +++
Sbjct: 49  LKRVDTEADLGQFTDIIKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVT 108

Query: 297 SSIPPELMNCS--QLQNLVLSHNTLSGIVP--PEIGNL--THLRQLDLSHNFINGTIPSQ 350
            + PP L+  +   L  L L + + +       E+       L+ L ++          Q
Sbjct: 109 GTAPPPLLEATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQ 168

Query: 351 LGYIPNISAVDLSKNNLSGVVPASVRIIPKLIVSENNLELEN 392
           +   P +S +DLS N   G       + P    +   L L N
Sbjct: 169 VRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRN 210

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 85.9 bits (213), Expect = 4e-19
 Identities = 58/227 (25%), Positives = 89/227 (39%), Gaps = 33/227 (14%)

Query: 68  NLVELDLSNNILNGSIPLEFGNLKDLDALRLRGNKLDGLIPSSIGNLTNLTHLDLSLNQL 127
           + +E++     L  ++P      KD   L L  N L     +++   T LT L+L   +L
Sbjct: 11  SHLEVNCDKRNL-TALPP--DLPKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAEL 67

Query: 128 SGRLPQEVGNLKNLLSLFLDNNNLTGPIPSTLYHLNQLSNLYLAYNNLVGPLPKEVGNMK 187
           +    Q  G L  L +L L +N L   +P     L  L+ L +++N L   LP       
Sbjct: 68  TK--LQVDGTLPVLGTLDLSHNQLQS-LPLLGQTLPALTVLDVSFNRLTS-LPLGA---- 119

Query: 188 NLDSLLLNRNSLTGPIPSTIGYLNLGGKLDLSHNRLDSPIPPTI-GNLTNLTSLDLSSNQ 246
            L  L      L               +L L  N L + +PP +      L  L L++N 
Sbjct: 120 -LRGL----GELQ--------------ELYLKGNELKT-LPPGLLTPTPKLEKLSLANNN 159

Query: 247 LSGLLPREVGNLKYLDSLSLDGNNLIGSIPPTIGYLTNLTSLNLGYN 293
           L+ L    +  L+ LD+L L  N+L  +IP        L    L  N
Sbjct: 160 LTELPAGLLNGLENLDTLLLQENSL-YTIPKGFFGSHLLPFAFLHGN 205

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 81.7 bits (202), Expect = 1e-17
 Identities = 57/230 (24%), Positives = 84/230 (36%), Gaps = 56/230 (24%)

Query: 113 NLTNLTHLDLSLNQLSGRLPQEVGNLKNLLSLFLDNNNLTGPIPSTLYHLNQLSNLYLAY 172
            + +   ++     L+  LP ++   K+   L L  N L     +TL    +L+ L L  
Sbjct: 8   KVASHLEVNCDKRNLT-ALPPDL--PKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDR 64

Query: 173 NNLVGPLPKEVGNMKNLDSLLLNRNSLTGPIPSTIGYLNLGGKLDLSHNRLDSPIPPTIG 232
             L      ++     L  L                     G LDLSHN+L S +P    
Sbjct: 65  AEL-----TKLQVDGTLPVL---------------------GTLDLSHNQLQS-LPLLGQ 97

Query: 233 NLTNLTSLDLSSNQLSGLLPREVGNLKYLDSLSLDGNNLIGSIPPTI-GYLTNLTSLNLG 291
            L  LT LD+S N+L+ L    +  L  L  L L GN L  ++PP +      L  L+L 
Sbjct: 98  TLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNEL-KTLPPGLLTPTPKLEKLSLA 156

Query: 292 YNQLSSSIPPELMNCSQLQNLVLSHNTLSGIVPPEIGNLTHLRQLDLSHN 341
            N L+  +P  L+N                        L +L  L L  N
Sbjct: 157 NNNLTE-LPAGLLN-----------------------GLENLDTLLLQEN 182

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 80.5 bits (199), Expect = 3e-17
 Identities = 53/181 (29%), Positives = 75/181 (41%), Gaps = 6/181 (3%)

Query: 18  FPNLESIIIPYTLLSGRIPSEIGALSKLEELALPYNSLTGTIPAEIGSLRNLVELDLSNN 77
             +   + +   LL     + +   ++L +L L    LT  +  + G+L  L  LDLS+N
Sbjct: 30  PKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELT-KLQVD-GTLPVLGTLDLSHN 87

Query: 78  ILNGSIPLEFGNLKDLDALRLRGNKLDGLIPSSIGNLTNLTHLDLSLNQLSGRLPQEV-G 136
            L  S+PL    L  L  L +  N+L  L   ++  L  L  L L  N+L   LP  +  
Sbjct: 88  QLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELK-TLPPGLLT 145

Query: 137 NLKNLLSLFLDNNNLTGPIPSTLYHLNQLSNLYLAYNNLVGPLPKEVGNMKNLDSLLLNR 196
               L  L L NNNLT      L  L  L  L L  N+L   +PK       L    L+ 
Sbjct: 146 PTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLYT-IPKGFFGSHLLPFAFLHG 204

Query: 197 N 197
           N
Sbjct: 205 N 205

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 54.7 bits (132), Expect = 2e-08
 Identities = 29/136 (21%), Positives = 53/136 (38%), Gaps = 30/136 (22%)

Query: 233 NLTNLTSLDLSSNQLSGLLPREVGNLKYLDSLSLDGNNLIGSIPPTIGYLTNLTSLNLGY 292
            + +   ++     L+                         ++PP +    + T L+L  
Sbjct: 8   KVASHLEVNCDKRNLT-------------------------ALPPDL--PKDTTILHLSE 40

Query: 293 NQLSSSIPPELMNCSQLQNLVLSHNTLSGIVPPEIGNLTHLRQLDLSHNFINGTIPSQLG 352
           N L +     LM  ++L  L L    L+ +     G L  L  LDLSHN +  ++P    
Sbjct: 41  NLLYTFSLATLMPYTRLTQLNLDRAELTKL--QVDGTLPVLGTLDLSHNQLQ-SLPLLGQ 97

Query: 353 YIPNISAVDLSKNNLS 368
            +P ++ +D+S N L+
Sbjct: 98  TLPALTVLDVSFNRLT 113

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 84.7 bits (210), Expect = 1e-18
 Identities = 59/282 (20%), Positives = 109/282 (38%), Gaps = 42/282 (14%)

Query: 65  SLRNLVELDLSNNILNGSIPLEFGNLKDLDALRLRGNKLDGLIPSSIGNLTNLTHLDLSL 124
           +    ++ +L    +  ++      L  +D +    + +  +    I  L N+T L L+ 
Sbjct: 22  AFAETIKDNLKKKSVTDAVTQN--ELNSIDQIIANNSDIKSV--QGIQYLPNVTKLFLNG 77

Query: 125 NQLSGRLPQEVGNLKNLLSLFLDNNNLTGPIPSTLYHLNQLSNLYLAYNNLVGPLPKEVG 184
           N+L+   P  + NLKNL  LFLD N +     S+L  L +L +L L +N +      ++ 
Sbjct: 78  NKLTDIKP--LANLKNLGWLFLDENKVK--DLSSLKDLKKLKSLSLEHNGI-----SDIN 128

Query: 185 NMKNLDSLLLNRNSLTGPIPSTIGYLNLGGKLDLSHNRLDSPIPPTIGNLTNLTSLDLSS 244
            + +L  L                       L L +N++       +  LT L +L L  
Sbjct: 129 GLVHLPQLE---------------------SLYLGNNKITDITV--LSRLTKLDTLSLED 165

Query: 245 NQLSGLLPREVGNLKYLDSLSLDGNNLIGSIPPTIGYLTNLTSLNLGYNQLSSSIPPELM 304
           NQ+S ++P  +  L  L +L L   N I  +   +  L NL  L L   +  +       
Sbjct: 166 NQISDIVP--LAGLTKLQNLYLS-KNHISDLRA-LAGLKNLDVLELFSQECLNKPINHQS 221

Query: 305 NCSQLQNLVLSHNTLSGIVPPEIGNLTHLRQLDLSHNFINGT 346
           N      +  +  +L  + P  I +     + ++  +    T
Sbjct: 222 NLVVPNTVKNTDGSL--VTPEIISDDGDYEKPNVKWHLPEFT 261

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 78.6 bits (194), Expect = 1e-16
 Identities = 60/258 (23%), Positives = 108/258 (41%), Gaps = 18/258 (6%)

Query: 41  ALSKLEELALPYNSLTGTIPAEIGSLRNLVELDLSNNILNGSIPLEFGNLKDLDALRLRG 100
           A ++  +  L   S+T  +      L ++ ++  +N+ +     ++   L ++  L L G
Sbjct: 22  AFAETIKDNLKKKSVTDAVT--QNELNSIDQIIANNSDIKSVQGIQ--YLPNVTKLFLNG 77

Query: 101 NKLDGLIPSSIGNLTNLTHLDLSLNQLSGRLPQEVGNLKNLLSLFLDNNNLTGPIPSTLY 160
           NKL  +    + NL NL  L L  N++      +  +LK L SL L++N ++    + L 
Sbjct: 78  NKLTDI--KPLANLKNLGWLFLDENKVKDLSSLK--DLKKLKSLSLEHNGIS--DINGLV 131

Query: 161 HLNQLSNLYLAYNNLVGPLPKEVGNMKNLDSLLLNRNSLTGPIPSTIGYLNLGGKLDLSH 220
           HL QL +LYL  N +       +  +  LD+L L  N ++  I    G   L   L LS 
Sbjct: 132 HLPQLESLYLGNNKITDITV--LSRLTKLDTLSLEDNQISD-IVPLAGLTKLQ-NLYLSK 187

Query: 221 NRLDSPIPPTIGNLTNLTSLDLSSNQLSGLLPREVGNLKYLDSLSLDGNNLIGSIPPTIG 280
           N +       +  L NL  L+L S +          NL   +++     +L+   P  I 
Sbjct: 188 NHISDLRA--LAGLKNLDVLELFSQECLNKPINHQSNLVVPNTVKNTDGSLVT--PEIIS 243

Query: 281 YLTNLTSLNLGYNQLSSS 298
              +    N+ ++    +
Sbjct: 244 DDGDYEKPNVKWHLPEFT 261

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 61.2 bits (149), Expect = 9e-11
 Identities = 43/189 (22%), Positives = 73/189 (38%), Gaps = 12/189 (6%)

Query: 14  NFTCFPNLESIIIPYTLLSGRIPSEIGALSKLEELALPYNSLTGTIPAEIGSLRNLVELD 73
                PN+  + +    L+  I   +  L  L  L L  N +       +  L+ L  L 
Sbjct: 63  GIQYLPNVTKLFLNGNKLT-DI-KPLANLKNLGWLFLDENKVKDLSS--LKDLKKLKSLS 118

Query: 74  LSNNILNGSIPLEFGNLKDLDALRLRGNKLDGLIPSSIGNLTNLTHLDLSLNQLSGRLPQ 133
           L +N ++    L   +L  L++L L  NK+  +  + +  LT L  L L  NQ+S     
Sbjct: 119 LEHNGISDINGLV--HLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISD--IV 172

Query: 134 EVGNLKNLLSLFLDNNNLTGPIPSTLYHLNQLSNLYLAYNNLVGPLPKEVGNMKNLDSLL 193
            +  L  L +L+L  N+++      L  L  L  L L     +        N+   +++ 
Sbjct: 173 PLAGLTKLQNLYLSKNHISD--LRALAGLKNLDVLELFSQECLNKPINHQSNLVVPNTVK 230

Query: 194 LNRNSLTGP 202
               SL  P
Sbjct: 231 NTDGSLVTP 239

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 59.7 bits (145), Expect = 3e-10
 Identities = 39/165 (23%), Positives = 64/165 (38%), Gaps = 8/165 (4%)

Query: 37  SEIGALSKLEELALPYNSLTGTIPAEIGSLRNLVELDLSNNILNGSIPLEFGNLKDLDAL 96
           S +  L KL+ L+L +N ++      +  L  L  L L NN +     L    L  LD L
Sbjct: 106 SSLKDLKKLKSLSLEHNGISDING--LVHLPQLESLYLGNNKITDITVLS--RLTKLDTL 161

Query: 97  RLRGNKLDGLIPSSIGNLTNLTHLDLSLNQLSGRLPQEVGNLKNLLSLFLDNNNLTGPIP 156
            L  N++  +    +  LT L +L LS N +S    + +  LKNL  L L +        
Sbjct: 162 SLEDNQISDI--VPLAGLTKLQNLYLSKNHISD--LRALAGLKNLDVLELFSQECLNKPI 217

Query: 157 STLYHLNQLSNLYLAYNNLVGPLPKEVGNMKNLDSLLLNRNSLTG 201
           +   +L   + +     +LV P            ++  +    T 
Sbjct: 218 NHQSNLVVPNTVKNTDGSLVTPEIISDDGDYEKPNVKWHLPEFTN 262

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 83.1 bits (206), Expect = 3e-18
 Identities = 56/159 (35%), Positives = 76/159 (47%), Gaps = 6/159 (3%)

Query: 42  LSKLEELALPYNSLTGTIPAEI-GSLRNLVELDLSNNILNGSIPLE-FGNLKDLDALRLR 99
           L+KL  L L  N L  T+PA I   L+NL  L +++N L  ++P+  F  L +L  LRL 
Sbjct: 60  LTKLRLLYLNDNKLQ-TLPAGIFKELKNLETLWVTDNKLQ-ALPIGVFDQLVNLAELRLD 117

Query: 100 GNKLDGLIPSSIGNLTNLTHLDLSLNQLSGRLPQEV-GNLKNLLSLFLDNNNLTGPIPST 158
            N+L  L P    +LT LT+L L  N+L   LP+ V   L +L  L L NN L       
Sbjct: 118 RNQLKSLPPRVFDSLTKLTYLSLGYNELQ-SLPKGVFDKLTSLKELRLYNNQLKRVPEGA 176

Query: 159 LYHLNQLSNLYLAYNNLVGPLPKEVGNMKNLDSLLLNRN 197
              L +L  L L  N L         +++ L  L L  N
Sbjct: 177 FDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQEN 215

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 81.9 bits (203), Expect = 7e-18
 Identities = 52/181 (28%), Positives = 81/181 (44%), Gaps = 6/181 (3%)

Query: 188 NLDSLLLNRNSLTGPIPSTIGYLNLGGKLDLSHNRLDSPIPPTI-GNLTNLTSLDLSSNQ 246
           +   L L  N L+         L     L L+ N+L + +P  I   L NL +L ++ N+
Sbjct: 38  DTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQT-LPAGIFKELKNLETLWVTDNK 96

Query: 247 LSGLLPREVGNLKYLDSLSLDGNNLIGSIPPTI-GYLTNLTSLNLGYNQLSSSIPPELMN 305
           L  L       L  L  L LD N  + S+PP +   LT LT L+LGYN+L  S+P  + +
Sbjct: 97  LQALPIGVFDQLVNLAELRLDRNQ-LKSLPPRVFDSLTKLTYLSLGYNEL-QSLPKGVFD 154

Query: 306 C-SQLQNLVLSHNTLSGIVPPEIGNLTHLRQLDLSHNFINGTIPSQLGYIPNISAVDLSK 364
             + L+ L L +N L  +       LT L+ L L +N +          +  +  + L +
Sbjct: 155 KLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQE 214

Query: 365 N 365
           N
Sbjct: 215 N 215

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 78.1 bits (193), Expect = 2e-16
 Identities = 63/196 (32%), Positives = 79/196 (40%), Gaps = 7/196 (3%)

Query: 52  YNSLTGTIPAEIGSLRNLVELDLSNNILNGSIPLEFGNLKDLDALRLRGNKLDGLIPSSI 111
              LT  IP+ I +  +  +LDL +N L+      F  L  L  L L  NKL  L     
Sbjct: 25  SKKLT-AIPSNIPA--DTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIF 81

Query: 112 GNLTNLTHLDLSLNQLSGRLPQEV-GNLKNLLSLFLDNNNLTGPIPSTLYHLNQLSNLYL 170
             L NL  L ++ N+L   LP  V   L NL  L LD N L    P     L +L+ L L
Sbjct: 82  KELKNLETLWVTDNKLQ-ALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSL 140

Query: 171 AYNNLVGPLPKEV-GNMKNLDSLLLNRNSLTGPIPSTIGYLNLGGKLDLSHNRLDSPIPP 229
            YN L   LPK V   + +L  L L  N L          L     L L +N+L      
Sbjct: 141 GYNELQS-LPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPEG 199

Query: 230 TIGNLTNLTSLDLSSN 245
              +L  L  L L  N
Sbjct: 200 AFDSLEKLKMLQLQEN 215

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 67.3 bits (165), Expect = 8e-13
 Identities = 41/127 (32%), Positives = 59/127 (46%), Gaps = 7/127 (5%)

Query: 217 DLSHNRLDSPIPPTIGNLTNLTSLDLSSNQLSGLLPREVGNLKYLDSLSLDGNNLIGSIP 276
           D S  +L + IP  I    +   LDL SN+LS L  +    L  L  L L+ N L  ++P
Sbjct: 22  DCSSKKLTA-IPSNI--PADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKL-QTLP 77

Query: 277 PTI-GYLTNLTSLNLGYNQLSSSIPPELMNC-SQLQNLVLSHNTLSGIVPPEIGNLTHLR 334
             I   L NL +L +  N+L  ++P  + +    L  L L  N L  + P    +LT L 
Sbjct: 78  AGIFKELKNLETLWVTDNKL-QALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLT 136

Query: 335 QLDLSHN 341
            L L +N
Sbjct: 137 YLSLGYN 143

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 80.0 bits (198), Expect = 2e-17
 Identities = 40/208 (19%), Positives = 76/208 (36%), Gaps = 8/208 (3%)

Query: 66  LRNLVELDLSNNILNGSIPLEFGNLKDLDALRLRGN-KLDGLIPSSIGNLTNLTHLDLSL 124
             +   L L    L       F NL ++  + +  +  L  L   S  NL+ +TH+++  
Sbjct: 30  PPSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRN 89

Query: 125 NQLSGRLPQEV-GNLKNLLSLFLDNNNLTG-PIPSTLYHLNQLSNLYLAYNNLVGPLPKE 182
            +    +  +    L  L  L + N  L   P  + +Y  +    L +  N  +  +P  
Sbjct: 90  TRNLTYIDPDALKELPLLKFLGIFNTGLKMFPDLTKVYSTDIFFILEITDNPYMTSIPVN 149

Query: 183 V--GNMKNLDSLLLNRNSLTGPIPSTIGYLNLGGKLDLSHNRLDSPIPPTI--GNLTNLT 238
              G      +L L  N  T           L   + L+ N+  + I      G  +  +
Sbjct: 150 AFQGLCNETLTLKLYNNGFTSVQGYAFNGTKL-DAVYLNKNKYLTVIDKDAFGGVYSGPS 208

Query: 239 SLDLSSNQLSGLLPREVGNLKYLDSLSL 266
            LD+S   ++ L  + + +LK L + + 
Sbjct: 209 LLDVSQTSVTALPSKGLEHLKELIARNT 236

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 79.7 bits (197), Expect = 2e-17
 Identities = 35/232 (15%), Positives = 86/232 (37%), Gaps = 33/232 (14%)

Query: 92  DLDALRLRGNKLDGLIPSSIGNLTNLTHLDLSLNQLSGRLPQEVGNLKNLLSLFLDNNNL 151
               L+L    L  +   +  NL N++ + +S                        +  L
Sbjct: 32  STQTLKLIETHLRTIPSHAFSNLPNISRIYVS-----------------------IDVTL 68

Query: 152 TGPIPSTLYHLNQLSNLYLAYNNLVGPLPKEV-GNMKNLDSLLLNRNSLTG-PIPSTIGY 209
                 + Y+L++++++ +     +  +  +    +  L  L +    L   P  + +  
Sbjct: 69  QQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLGIFNTGLKMFPDLTKVYS 128

Query: 210 LNLGGKLDLSHNRLDSPIPP-TIGNLTNLT-SLDLSSNQLSGLLPREVGNLKYLDSLSLD 267
            ++   L+++ N   + IP      L N T +L L +N  +  +     N   LD++ L+
Sbjct: 129 TDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFTS-VQGYAFNGTKLDAVYLN 187

Query: 268 GNNLIGSIPPTI--GYLTNLTSLNLGYNQLSSSIPPELMNCSQLQNLVLSHN 317
            N  +  I      G  +  + L++    + +++P + +    L+ L+  + 
Sbjct: 188 KNKYLTVIDKDAFGGVYSGPSLLDVSQTSV-TALPSKGL--EHLKELIARNT 236

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 73.1 bits (180), Expect = 6e-15
 Identities = 34/234 (14%), Positives = 80/234 (34%), Gaps = 32/234 (13%)

Query: 114 LTNLTHLDLSLNQLSGRLPQEVGNLKNLLSLFLDNNNLTGPIPS-TLYHLNQLSNLYLAY 172
             +   L L    L         NL N+  +++  +     + S + Y+L++++++ +  
Sbjct: 30  PPSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRN 89

Query: 173 NNLVGPLPKEV-GNMKNLDSLLLNRNSLTG-PIPSTIGYLNLGGKLDLSHNRLDSPIPP- 229
              +  +  +    +  L  L +    L   P  + +   ++   L+++ N   + IP  
Sbjct: 90  TRNLTYIDPDALKELPLLKFLGIFNTGLKMFPDLTKVYSTDIFFILEITDNPYMTSIPVN 149

Query: 230 TIGNLTNLT-SLDLSSNQLSGLLPREVGNLKYLDSLSLDGNNLIGSIPPTIGYLTNLTSL 288
               L N T +L L +N  +                         S+       T L ++
Sbjct: 150 AFQGLCNETLTLKLYNNGFT-------------------------SVQGYAFNGTKLDAV 184

Query: 289 NLGYNQLSSSIPPELMN--CSQLQNLVLSHNTLSGIVPPEIGNLTHLRQLDLSH 340
            L  N+  + I  +      S    L +S  +++ +    + +L  L   +   
Sbjct: 185 YLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVTALPSKGLEHLKELIARNTWT 238

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 72.3 bits (178), Expect = 1e-14
 Identities = 39/235 (16%), Positives = 79/235 (33%), Gaps = 34/235 (14%)

Query: 115 TNLTHLDLSLNQLSGRLPQEVGNLKNLLSLFLDNNNLTGPIPSTLYHLNQLSNLYLAYNN 174
                  ++   +  R+P       +  +L L   +L         +L  +S +Y++ + 
Sbjct: 11  HQEEDFRVTCKDIQ-RIP---SLPPSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDV 66

Query: 175 LVGPLPKEVGNMKNLDSLLLNRNSLTGPIPSTIGYLNLGGKLDLSHNRLDSPIPP-TIGN 233
            +  L        NL  +                       +++ + R  + I P  +  
Sbjct: 67  TLQQLESHS--FYNLSKVT---------------------HIEIRNTRNLTYIDPDALKE 103

Query: 234 LTNLTSLDLSSNQLSGLLP-REVGNLKYLDSLSLDGNNLIGSIPP-TIGYLTNLT-SLNL 290
           L  L  L + +  L       +V +      L +  N  + SIP      L N T +L L
Sbjct: 104 LPLLKFLGIFNTGLKMFPDLTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKL 163

Query: 291 GYNQLSSSIPPELMNCSQLQNLVLSHNTLSGIVPPEI--GNLTHLRQLDLSHNFI 343
             N  +S +     N ++L  + L+ N    ++  +   G  +    LD+S   +
Sbjct: 164 YNNGFTS-VQGYAFNGTKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSV 217

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 65.0 bits (159), Expect = 3e-12
 Identities = 23/163 (14%), Positives = 54/163 (33%), Gaps = 9/163 (5%)

Query: 213 GGKLDLSHNRLDSPIPPTIGNLTNLTSLDLSSNQLSGLLPREVGNLKYLDSLSLDGNNLI 272
                ++   +   IP       +  +L L    L  +      NL  +  + +  +  +
Sbjct: 13  EEDFRVTCKDIQR-IP---SLPPSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTL 68

Query: 273 GSIPPTI-GYLTNLTSLNLGYNQLSSSIPPE-LMNCSQLQNLVLSHNTLSGIVP-PEIGN 329
             +       L+ +T + +   +  + I P+ L     L+ L + +  L       ++ +
Sbjct: 69  QQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLGIFNTGLKMFPDLTKVYS 128

Query: 330 LTHLRQLDLSHNFINGTIPSQL--GYIPNISAVDLSKNNLSGV 370
                 L+++ N    +IP     G       + L  N  + V
Sbjct: 129 TDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFTSV 171

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 62.3 bits (152), Expect = 2e-11
 Identities = 30/189 (15%), Positives = 68/189 (35%), Gaps = 8/189 (4%)

Query: 19  PNLESIIIPYTLLSGRIPSEIGALSKLEELALPYNSLTGTIPAEI-GSLRNLVELDLSNN 77
           P+ +++ +  T L          L  +  + +  +     + +    +L  +  +++ N 
Sbjct: 31  PSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNT 90

Query: 78  ILNGSIPLE-FGNLKDLDALRLRGNKLDGLIP-SSIGNLTNLTHLDLSLNQLSGRLPQEV 135
                I  +    L  L  L +    L      + + +      L+++ N     +P   
Sbjct: 91  RNLTYIDPDALKELPLLKFLGIFNTGLKMFPDLTKVYSTDIFFILEITDNPYMTSIPVNA 150

Query: 136 -GNLKNLL-SLFLDNNNLTGPIPSTLYHLNQLSNLYLAYNNLVGPLPKEV--GNMKNLDS 191
              L N   +L L NN  T  +    ++  +L  +YL  N  +  + K+   G       
Sbjct: 151 FQGLCNETLTLKLYNNGFTS-VQGYAFNGTKLDAVYLNKNKYLTVIDKDAFGGVYSGPSL 209

Query: 192 LLLNRNSLT 200
           L +++ S+T
Sbjct: 210 LDVSQTSVT 218

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 49.6 bits (119), Expect = 4e-07
 Identities = 32/157 (20%), Positives = 55/157 (35%), Gaps = 9/157 (5%)

Query: 19  PNLESIIIPYTLLSGRIPSEI-GALSKLEELALPYNSLTGTIPAE--IGSLRNLVELDLS 75
             +  I I  T     I  +    L  L+ L +    L    P    + S      L+++
Sbjct: 80  SKVTHIEIRNTRNLTYIDPDALKELPLLKFLGIFNTGLK-MFPDLTKVYSTDIFFILEIT 138

Query: 76  NNILNGSIPLE-FGNL-KDLDALRLRGNKLDGLIPSSIGNLTNLTHLDLSLNQLSGRLPQ 133
           +N    SIP+  F  L  +   L+L  N     +     N T L  + L+ N+    + +
Sbjct: 139 DNPYMTSIPVNAFQGLCNETLTLKLYNNGF-TSVQGYAFNGTKLDAVYLNKNKYLTVIDK 197

Query: 134 EV--GNLKNLLSLFLDNNNLTGPIPSTLYHLNQLSNL 168
           +   G       L +   ++T      L HL +L   
Sbjct: 198 DAFGGVYSGPSLLDVSQTSVTALPSKGLEHLKELIAR 234

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 81.4 bits (201), Expect = 3e-17
 Identities = 47/184 (25%), Positives = 78/184 (42%), Gaps = 15/184 (8%)

Query: 216 LDLSHNRLDSPIPPTIGNLTNLTSLDLSSNQLSGLLPREV-GNLKYLDSLSLDGNNLIGS 274
           L  S  +L + +P ++   +    LDLS N LS L        L  L SL L  N+ +  
Sbjct: 23  LSCSKQQLPN-VPQSL--PSYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNH-LNF 78

Query: 275 IPP-TIGYLTNLTSLNLGYNQLSSSIPPE-LMNCSQLQNLVLSHNTLSGIVPPEIGNLTH 332
           I       + NL  L+L  N L  ++      +   L+ L+L +N +  +      ++  
Sbjct: 79  ISSEAFVPVPNLRYLDLSSNHL-HTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQ 137

Query: 333 LRQLDLSHNFINGTIP----SQLGYIPNISAVDLSKNNLSGVVPASVRIIPKLIVSENNL 388
           L++L LS N I+   P         +P +  +DLS N L  +    ++ +P     +N L
Sbjct: 138 LQKLYLSQNQIS-RFPVELIKDGNKLPKLMLLDLSSNKLKKLPLTDLQKLPAW--VKNGL 194

Query: 389 ELEN 392
            L N
Sbjct: 195 YLHN 198

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 81.0 bits (200), Expect = 4e-17
 Identities = 46/159 (28%), Positives = 63/159 (39%), Gaps = 10/159 (6%)

Query: 215 KLDLSHNRLDSPIPPTI--GNLTNLTSLDLSSNQLSGLLPREVGNLKYLDSLSLDGNNLI 272
            LDLSHN L   +        LTNL SL LS N L+ +       +  L  L L  N+L 
Sbjct: 43  LLDLSHNNLSR-LRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNHL- 100

Query: 273 GSIPP-TIGYLTNLTSLNLGYNQLSSSIPPE-LMNCSQLQNLVLSHNTLSGIVP---PEI 327
            ++       L  L  L L  N +   +      + +QLQ L LS N +S        + 
Sbjct: 101 HTLDEFLFSDLQALEVLLLYNNHI-VVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDG 159

Query: 328 GNLTHLRQLDLSHNFINGTIPSQLGYIPNISAVDLSKNN 366
             L  L  LDLS N +     + L  +P      L  +N
Sbjct: 160 NKLPKLMLLDLSSNKLKKLPLTDLQKLPAWVKNGLYLHN 198

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 73.0 bits (179), Expect = 2e-14
 Identities = 42/169 (24%), Positives = 66/169 (39%), Gaps = 14/169 (8%)

Query: 35  IPSEIGALSKLEELALPYNSLTGTIPAEI--GSLRNLVELDLSNNILNGSIPLE-FGNLK 91
           +P  + +      L L +N+L+  + AE     L NL  L LS+N LN  I  E F  + 
Sbjct: 33  VPQSLPSY--TALLDLSHNNLS-RLRAEWTPTRLTNLHSLLLSHNHLN-FISSEAFVPVP 88

Query: 92  DLDALRLRGNKLDGLIPSSIGNLTNLTHLDLSLNQLSGRLPQEV-GNLKNLLSLFLDNNN 150
           +L  L L  N L  L      +L  L  L L  N +   + +    ++  L  L+L  N 
Sbjct: 89  NLRYLDLSSNHLHTLDEFLFSDLQALEVLLLYNNHIV-VVDRNAFEDMAQLQKLYLSQNQ 147

Query: 151 LTGPIP----STLYHLNQLSNLYLAYNNLVGPLPKEVGNMKNLDSLLLN 195
           ++   P         L +L  L L+ N L      ++  +       L 
Sbjct: 148 ISR-FPVELIKDGNKLPKLMLLDLSSNKLKKLPLTDLQKLPAWVKNGLY 195

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 76.2 bits (188), Expect = 6e-16
 Identities = 48/249 (19%), Positives = 92/249 (36%), Gaps = 19/249 (7%)

Query: 98  LRGNKLDGLIPSSIGNLTNLTHLDLSLNQLSGRLPQEVGNLKNLLSLFLDNNNLTGPIPS 157
            R   ++ + P     L N    +L    ++  + Q+   L  + +   DN+N+     +
Sbjct: 4   QRPTPINQVFP--DPGLANAVKQNLGKQSVTDLVSQK--ELSGVQNFNGDNSNIQ--SLA 57

Query: 158 TLYHLNQLSNLYLAYNNLVGPLPKEVGNMKNLDSLLLNRNSLTGPIPSTIGYLNLGGKLD 217
            +     L  L+L++N +    P  + ++  L+ L +NRN L     + I    L  +L 
Sbjct: 58  GMQFFTNLKELHLSHNQISDLSP--LKDLTKLEELSVNRNRLK--NLNGIPSACL-SRLF 112

Query: 218 LSHNRLDSPIPPTIGNLTNLTSLDLSSNQLSGLLPREVGNLKYLDSLSLDGNNLIGSIPP 277
           L +N L       + +L NL  L + +N+L  ++   +G L  L+ L L GN  I +   
Sbjct: 113 LDNNELRDTDS--LIHLKNLEILSIRNNKLKSIVM--LGFLSKLEVLDLHGNE-ITNTGG 167

Query: 278 TIGYLTNLTSLNLGYNQLSSSIPPELMNCSQLQNLVLSHNTLSGIVPPEIGNLTHLRQLD 337
            +  L  +  ++L   +  +              +         I P  I N        
Sbjct: 168 -LTRLKKVNWIDLTGQKCVNEPVKYQPELYITNTVKDPDGRW--ISPYYISNGGSYVDGC 224

Query: 338 LSHNFINGT 346
           +       T
Sbjct: 225 VLWELPVYT 233

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 67.7 bits (166), Expect = 4e-13
 Identities = 45/236 (19%), Positives = 86/236 (36%), Gaps = 17/236 (7%)

Query: 63  IGSLRNLVELDLSNNILNGSIPLEFGNLKDLDALRLRGNKLDGLIPSSIGNLTNLTHLDL 122
              L N V+ +L    +   +  +   L  +       + +  L  + +   TNL  L L
Sbjct: 15  DPGLANAVKQNLGKQSVTDLVSQK--ELSGVQNFNGDNSNIQSL--AGMQFFTNLKELHL 70

Query: 123 SLNQLSGRLPQEVGNLKNLLSLFLDNNNLTGPIPSTLYHLNQLSNLYLAYNNLVGPLPKE 182
           S NQ+S      + +L  L  L ++ N L     + +     LS L+L  N L       
Sbjct: 71  SHNQISD--LSPLKDLTKLEELSVNRNRLK--NLNGIPSAC-LSRLFLDNNELRDTDS-- 123

Query: 183 VGNMKNLDSLLLNRNSLTGPIPSTIGYLNLGGKLDLSHNRLDSPIPPTIGNLTNLTSLDL 242
           + ++KNL+ L +  N L       +G+L+    LDL  N + +     +  L  +  +DL
Sbjct: 124 LIHLKNLEILSIRNNKLKS--IVMLGFLSKLEVLDLHGNEITNTGG--LTRLKKVNWIDL 179

Query: 243 SSNQLSGLLPREVGNLKYLDSLSLDGNNLIGSIPPTIGYLTNLTSLNLGYNQLSSS 298
           +  +      +    L   +++       I   P  I    +     + +     +
Sbjct: 180 TGQKCVNEPVKYQPELYITNTVKDPDGRWIS--PYYISNGGSYVDGCVLWELPVYT 233

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 54.3 bits (131), Expect = 1e-08
 Identities = 36/143 (25%), Positives = 57/143 (39%), Gaps = 9/143 (6%)

Query: 37  SEIGALSKLEELALPYNSLTGTIPAEIGSLRNLVELDLSNNILNGSIPLEFGNLKDLDAL 96
           S +  L+KLEEL++  N L             L  L L NN L  +  L   +LK+L+ L
Sbjct: 79  SPLKDLTKLEELSVNRNRLKNL---NGIPSACLSRLFLDNNELRDTDSLI--HLKNLEIL 133

Query: 97  RLRGNKLDGLIPSSIGNLTNLTHLDLSLNQLSGRLPQEVGNLKNLLSLFLDNNNLTGPIP 156
            +R NKL  +    +G L+ L  LDL  N+++      +  LK +  + L          
Sbjct: 134 SIRNNKLKSI--VMLGFLSKLEVLDLHGNEITN--TGGLTRLKKVNWIDLTGQKCVNEPV 189

Query: 157 STLYHLNQLSNLYLAYNNLVGPL 179
                L   + +       + P 
Sbjct: 190 KYQPELYITNTVKDPDGRWISPY 212

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 74.7 bits (184), Expect = 1e-15
 Identities = 36/130 (27%), Positives = 59/130 (45%), Gaps = 6/130 (4%)

Query: 215 KLDLSHNRLDSPIPPTI-GNLTNLTSLDLSSNQLSGLLPREVGNLKYLDSLSLDGNNLIG 273
           ++ L  N +   IPP        L  +DLS+NQ+S L P     L+ L+SL L GN +  
Sbjct: 36  EIRLEQNTIKV-IPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKI-T 93

Query: 274 SIPPTI-GYLTNLTSLNLGYNQLSSSIPPELM-NCSQLQNLVLSHNTLSGIVPPEIGNLT 331
            +P ++   L +L  L L  N+++  +  +   +   L  L L  N L  I       L 
Sbjct: 94  ELPKSLFEGLFSLQLLLLNANKINC-LRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLR 152

Query: 332 HLRQLDLSHN 341
            ++ + L+ N
Sbjct: 153 AIQTMHLAQN 162

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 68.9 bits (169), Expect = 1e-13
 Identities = 36/155 (23%), Positives = 61/155 (39%), Gaps = 7/155 (4%)

Query: 213 GGKLDLSHNRLDSPIPPTIGNLTNLTSLDLSSNQLSGLLPREVGNLKYLDSLSLDGNNLI 272
              +D     L   IP  +     +T + L  N +  + P      K L  + L  NN I
Sbjct: 13  NNIVDCRGKGLTE-IPTNL--PETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLS-NNQI 68

Query: 273 GSIPPTI-GYLTNLTSLNLGYNQLSSSIPPELM-NCSQLQNLVLSHNTLSGIVPPEIGNL 330
             + P     L +L SL L  N+++  +P  L      LQ L+L+ N ++ +      +L
Sbjct: 69  SELAPDAFQGLRSLNSLVLYGNKITE-LPKSLFEGLFSLQLLLLNANKINCLRVDAFQDL 127

Query: 331 THLRQLDLSHNFINGTIPSQLGYIPNISAVDLSKN 365
            +L  L L  N +          +  I  + L++N
Sbjct: 128 HNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQN 162

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 67.4 bits (165), Expect = 3e-13
 Identities = 36/135 (26%), Positives = 54/135 (40%), Gaps = 4/135 (2%)

Query: 92  DLDALRLRGNKLDGLIPSSIGNLTNLTHLDLSLNQLSGRLPQEV-GNLKNLLSLFLDNNN 150
            +  +RL  N +  + P +      L  +DLS NQ+S  L  +    L++L SL L  N 
Sbjct: 33  TITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQIS-ELAPDAFQGLRSLNSLVLYGNK 91

Query: 151 LTGPIPSTLYHLNQLSNLYLAYNNLVGPLPKEV-GNMKNLDSLLLNRNSLTGPIPSTIGY 209
           +T    S    L  L  L L  N +   L  +   ++ NL+ L L  N L      T   
Sbjct: 92  ITELPKSLFEGLFSLQLLLLNANKINC-LRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSP 150

Query: 210 LNLGGKLDLSHNRLD 224
           L     + L+ N   
Sbjct: 151 LRAIQTMHLAQNPFI 165

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 65.8 bits (161), Expect = 1e-12
 Identities = 33/134 (24%), Positives = 57/134 (42%), Gaps = 8/134 (5%)

Query: 188 NLDSLLLNRNSLTGPIPSTI--GYLNLGGKLDLSHNRLDSPIPPTI-GNLTNLTSLDLSS 244
            +  + L +N++   IP      Y  L  ++DLS+N++   + P     L +L SL L  
Sbjct: 33  TITEIRLEQNTIKV-IPPGAFSPYKKLR-RIDLSNNQISE-LAPDAFQGLRSLNSLVLYG 89

Query: 245 NQLSGLLPREVGNLKYLDSLSLDGNNLIGSIPP-TIGYLTNLTSLNLGYNQLSSSIPPEL 303
           N+++ L       L  L  L L+ N +   +       L NL  L+L  N+L +      
Sbjct: 90  NKITELPKSLFEGLFSLQLLLLNANKI-NCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTF 148

Query: 304 MNCSQLQNLVLSHN 317
                +Q + L+ N
Sbjct: 149 SPLRAIQTMHLAQN 162

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 65.1 bits (159), Expect = 2e-12
 Identities = 35/147 (23%), Positives = 60/147 (40%), Gaps = 5/147 (3%)

Query: 52  YNSLTGTIPAEIGSLRNLVELDLSNNILNGSIPLEFGNLKDLDALRLRGNKLDGLIPSSI 111
              LT  IP  +     + E+ L  N +    P  F   K L  + L  N++  L P + 
Sbjct: 20  GKGLT-EIPTNLPE--TITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAF 76

Query: 112 GNLTNLTHLDLSLNQLSGRLPQEV-GNLKNLLSLFLDNNNLTGPIPSTLYHLNQLSNLYL 170
             L +L  L L  N+++  LP+ +   L +L  L L+ N +          L+ L+ L L
Sbjct: 77  QGLRSLNSLVLYGNKIT-ELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSL 135

Query: 171 AYNNLVGPLPKEVGNMKNLDSLLLNRN 197
             N L          ++ + ++ L +N
Sbjct: 136 YDNKLQTIAKGTFSPLRAIQTMHLAQN 162

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 63.9 bits (156), Expect = 5e-12
 Identities = 29/110 (26%), Positives = 46/110 (41%), Gaps = 4/110 (3%)

Query: 42  LSKLEELALPYNSLTGTIPAEI-GSLRNLVELDLSNNILNGSIPLE-FGNLKDLDALRLR 99
             KL  + L  N ++  +  +    LR+L  L L  N +   +P   F  L  L  L L 
Sbjct: 55  YKKLRRIDLSNNQIS-ELAPDAFQGLRSLNSLVLYGNKIT-ELPKSLFEGLFSLQLLLLN 112

Query: 100 GNKLDGLIPSSIGNLTNLTHLDLSLNQLSGRLPQEVGNLKNLLSLFLDNN 149
            NK++ L   +  +L NL  L L  N+L          L+ + ++ L  N
Sbjct: 113 ANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQN 162

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 61.6 bits (150), Expect = 4e-11
 Identities = 30/130 (23%), Positives = 55/130 (42%), Gaps = 6/130 (4%)

Query: 167 NLYLAYNNLVGPLPKEVGNMKNLDSLLLNRNSLTGPIPSTI--GYLNLGGKLDLSHNRLD 224
            + L  N +    P      K L  + L+ N ++  +      G  +L   L L  N++ 
Sbjct: 36  EIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISE-LAPDAFQGLRSLN-SLVLYGNKIT 93

Query: 225 SPIPPTI-GNLTNLTSLDLSSNQLSGLLPREVGNLKYLDSLSLDGNNLIGSIPPTIGYLT 283
             +P ++   L +L  L L++N+++ L      +L  L+ LSL  N L      T   L 
Sbjct: 94  E-LPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLR 152

Query: 284 NLTSLNLGYN 293
            + +++L  N
Sbjct: 153 AIQTMHLAQN 162

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Length = 251

 Score = 71.3 bits (175), Expect = 3e-14
 Identities = 50/155 (32%), Positives = 71/155 (45%), Gaps = 6/155 (3%)

Query: 190 DSLLLNRNSLTGPIPSTIGYLNLGGKLDLSHNRLDSPIPPTI-GNLTNLTSLDLSSNQLS 248
           + L L    L     +T   L     L+L +N+L + +   +  +LT L +L L++NQL+
Sbjct: 38  EKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQT-LSAGVFDDLTELGTLGLANNQLA 96

Query: 249 GLLPREVGNLKYLDSLSLDGNNLIGSIPPTI-GYLTNLTSLNLGYNQLSSSIPPELMNC- 306
            L      +L  LD L L GN L  S+P  +   LT L  L L  NQL S IP    +  
Sbjct: 97  SLPLGVFDHLTQLDKLYLGGNQL-KSLPSGVFDRLTKLKELRLNTNQLQS-IPAGAFDKL 154

Query: 307 SQLQNLVLSHNTLSGIVPPEIGNLTHLRQLDLSHN 341
           + LQ L LS N L  +       L  L+ + L  N
Sbjct: 155 TNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGN 189

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Length = 251

 Score = 69.7 bits (171), Expect = 8e-14
 Identities = 51/166 (30%), Positives = 68/166 (40%), Gaps = 8/166 (4%)

Query: 35  IPSEIGALSKLEELALPYNSLTGTIPAEIGSLRNLVELDLSNNILNGSIPLE-FGNLKDL 93
           +PS I A +  E+L L    L     A    L  L  L+L  N L  ++    F +L +L
Sbjct: 29  VPSGIPADT--EKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQL-QTLSAGVFDDLTEL 85

Query: 94  DALRLRGNKLDGLIPSSIGNLTNLTHLDLSLNQLSGRLPQEV-GNLKNLLSLFLDNNNLT 152
             L L  N+L  L      +LT L  L L  NQL   LP  V   L  L  L L+ N L 
Sbjct: 86  GTLGLANNQLASLPLGVFDHLTQLDKLYLGGNQLK-SLPSGVFDRLTKLKELRLNTNQLQ 144

Query: 153 GPIPSTLY-HLNQLSNLYLAYNNLVGPLPKEVGNMKNLDSLLLNRN 197
             IP+  +  L  L  L L+ N L          +  L ++ L  N
Sbjct: 145 S-IPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGN 189

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Length = 251

 Score = 67.0 bits (164), Expect = 7e-13
 Identities = 48/153 (31%), Positives = 61/153 (39%), Gaps = 4/153 (2%)

Query: 167 NLYLAYNNLVGPLPKEVGNMKNLDSLLLNRNSLTGPIPSTIGYLNLGGKLDLSHNRLDSP 226
            L L    L          +  L  L L+ N L          L   G L L++N+L S 
Sbjct: 39  KLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLAS- 97

Query: 227 IPPTI-GNLTNLTSLDLSSNQLSGLLPREVGNLKYLDSLSLDGNNLIGSIPPTI-GYLTN 284
           +P  +  +LT L  L L  NQL  L       L  L  L L+ N L  SIP      LTN
Sbjct: 98  LPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQL-QSIPAGAFDKLTN 156

Query: 285 LTSLNLGYNQLSSSIPPELMNCSQLQNLVLSHN 317
           L +L+L  NQL S          +LQ + L  N
Sbjct: 157 LQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGN 189

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Length = 251

 Score = 61.2 bits (149), Expect = 6e-11
 Identities = 51/164 (31%), Positives = 70/164 (42%), Gaps = 23/164 (14%)

Query: 217 DLSHNRLDSPIPPTIGNLTNLTSLDLSSNQLSGLLPREVGNLKYLDSLSLDGNNLIGSIP 276
           D     LDS +P  I    +   LDL S  L+ L       L  L  L+LD N L  ++ 
Sbjct: 20  DCQGKSLDS-VPSGIP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQL-QTLS 75

Query: 277 PTI-GYLTNLTSLNLGYNQLSSSIPPELMNC-SQLQNLVLSHNTLSGIVPPEIGNLTHLR 334
             +   LT L +L L  NQL +S+P  + +  +QL  L L  N L  +       LT L+
Sbjct: 76  AGVFDDLTELGTLGLANNQL-ASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLK 134

Query: 335 QLDLSHNFINGTIPSQLGYIP--------NISAVDLSKNNLSGV 370
           +L L+ N        QL  IP        N+  + LS N L  V
Sbjct: 135 ELRLNTN--------QLQSIPAGAFDKLTNLQTLSLSTNQLQSV 170

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Length = 251

 Score = 58.9 bits (143), Expect = 4e-10
 Identities = 46/151 (30%), Positives = 63/151 (41%), Gaps = 7/151 (4%)

Query: 52  YNSLTGTIPAEIGSLRNLVELDLSNNILNGSIPLEFGNLKDLDALRLRGNKLDGLIPSSI 111
             SL  ++P+ I    +  +LDL +  L       F  L  L  L L  N+L  L     
Sbjct: 23  GKSLD-SVPSGIP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVF 79

Query: 112 GNLTNLTHLDLSLNQLSGRLPQEV-GNLKNLLSLFLDNNNLTGPIPSTLYHLNQLSNLYL 170
            +LT L  L L+ NQL+  LP  V  +L  L  L+L  N L          L +L  L L
Sbjct: 80  DDLTELGTLGLANNQLA-SLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRL 138

Query: 171 AYNNLVGPLPKEV-GNMKNLDSLLLNRNSLT 200
             N L   +P      + NL +L L+ N L 
Sbjct: 139 NTNQLQS-IPAGAFDKLTNLQTLSLSTNQLQ 168

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 69.7 bits (171), Expect = 5e-14
 Identities = 26/131 (19%), Positives = 57/131 (43%), Gaps = 7/131 (5%)

Query: 215 KLDLSHNRLDSPIPPTIG--NLTNLTSLDLSSNQLSGLLPREVGNLKYLDSLSLDGNNLI 272
           +L L++N     +  T     L  L  ++ S+N+++ +          ++ + L  N L 
Sbjct: 36  ELRLNNNEFTV-LEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNRLE 94

Query: 273 GSIPPTI-GYLTNLTSLNLGYNQLSSSIPPEL-MNCSQLQNLVLSHNTLSGIVPPEIGNL 330
            ++   +   L +L +L L  N++ + +  +  +  S ++ L L  N ++ + P     L
Sbjct: 95  -NVQHKMFKGLESLKTLMLRSNRI-TCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTL 152

Query: 331 THLRQLDLSHN 341
             L  L+L  N
Sbjct: 153 HSLSTLNLLAN 163

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 65.1 bits (159), Expect = 2e-12
 Identities = 32/148 (21%), Positives = 57/148 (38%), Gaps = 6/148 (4%)

Query: 52  YNSLTGTIPAEIGSLRNLVELDLSNNILNGSIPL-EFGNLKDLDALRLRGNKLDGLIPSS 110
              L   IP  I       EL L+NN          F  L  L  +    NK+  +   +
Sbjct: 20  NQKLN-KIPEHIPQ--YTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGA 76

Query: 111 IGNLTNLTHLDLSLNQLSGRLPQEV-GNLKNLLSLFLDNNNLTGPIPSTLYHLNQLSNLY 169
               + +  + L+ N+L   +  ++   L++L +L L +N +T     +   L+ +  L 
Sbjct: 77  FEGASGVNEILLTSNRLE-NVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLS 135

Query: 170 LAYNNLVGPLPKEVGNMKNLDSLLLNRN 197
           L  N +    P     + +L +L L  N
Sbjct: 136 LYDNQITTVAPGAFDTLHSLSTLNLLAN 163

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 64.7 bits (158), Expect = 3e-12
 Identities = 29/130 (22%), Positives = 54/130 (41%), Gaps = 8/130 (6%)

Query: 217 DLSHNRLDSPIPPTIGNLTNLTSLDLSSNQLSGLLPREV-GNLKYLDSLSLDGNNLIGSI 275
           D S+ +L+  IP  I        L L++N+ + L    +   L  L  ++   NN I  I
Sbjct: 17  DCSNQKLNK-IPEHIP--QYTAELRLNNNEFTVLEATGIFKKLPQLRKINFS-NNKITDI 72

Query: 276 PPTI-GYLTNLTSLNLGYNQLSSSIPPELM-NCSQLQNLVLSHNTLSGIVPPEIGNLTHL 333
                   + +  + L  N+L  ++  ++      L+ L+L  N ++ +       L+ +
Sbjct: 73  EEGAFEGASGVNEILLTSNRL-ENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSV 131

Query: 334 RQLDLSHNFI 343
           R L L  N I
Sbjct: 132 RLLSLYDNQI 141

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 62.8 bits (153), Expect = 1e-11
 Identities = 28/132 (21%), Positives = 54/132 (40%), Gaps = 5/132 (3%)

Query: 167 NLYLAYNNLVGPLPKEV-GNMKNLDSLLLNRNSLTGPIPSTIGYLNLGGKLDLSHNRLDS 225
            L L  N         +   +  L  +  + N +T          +   ++ L+ NRL++
Sbjct: 36  ELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNRLEN 95

Query: 226 PIPPTI-GNLTNLTSLDLSSNQLSGLLPREVGNLKYLDSLSLDGNNLIGSIPP-TIGYLT 283
            +   +   L +L +L L SN+++ +       L  +  LSL  N +  ++ P     L 
Sbjct: 96  -VQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQI-TTVAPGAFDTLH 153

Query: 284 NLTSLNLGYNQL 295
           +L++LNL  N  
Sbjct: 154 SLSTLNLLANPF 165

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 50.4 bits (121), Expect = 2e-07
 Identities = 21/88 (23%), Positives = 39/88 (44%), Gaps = 4/88 (4%)

Query: 42  LSKLEELALPYNSLTGTIPAEI-GSLRNLVELDLSNNILNGSIPLE-FGNLKDLDALRLR 99
            S + E+ L  N L   +  ++   L +L  L L +N +   +  + F  L  +  L L 
Sbjct: 80  ASGVNEILLTSNRLE-NVQHKMFKGLESLKTLMLRSNRIT-CVGNDSFIGLSSVRLLSLY 137

Query: 100 GNKLDGLIPSSIGNLTNLTHLDLSLNQL 127
            N++  + P +   L +L+ L+L  N  
Sbjct: 138 DNQITTVAPGAFDTLHSLSTLNLLANPF 165

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} Length = 229

 Score = 70.1 bits (172), Expect = 5e-14
 Identities = 44/141 (31%), Positives = 67/141 (47%), Gaps = 6/141 (4%)

Query: 35  IPSEIGALSKLEELALPYNSLTGTIPAEIGSLRNLVELDLSNNILNGSIPLE-FGNLKDL 93
           +P+ I   +  + L L  N +T   P    SL NL EL L +N L  ++P+  F +L  L
Sbjct: 34  VPAGIPTNA--QILYLHDNQITKLEPGVFDSLINLKELYLGSNQLG-ALPVGVFDSLTQL 90

Query: 94  DALRLRGNKLDGLIPSSIGNLTNLTHLDLSLNQLSGRLPQEVGNLKNLLSLFLDNNNLTG 153
             L L  N+L  L  +    L +L  L +  N+L+  LP+ +  L +L  L LD N L  
Sbjct: 91  TVLDLGTNQLTVLPSAVFDRLVHLKELFMCCNKLT-ELPRGIERLTHLTHLALDQNQLKS 149

Query: 154 PIPSTLYHLNQLSNLYLAYNN 174
                   L+ L++ YL + N
Sbjct: 150 IPHGAFDRLSSLTHAYL-FGN 169

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} Length = 229

 Score = 67.8 bits (166), Expect = 3e-13
 Identities = 37/128 (28%), Positives = 52/128 (40%), Gaps = 3/128 (2%)

Query: 215 KLDLSHNRLDSPIPPTIGNLTNLTSLDLSSNQLSGLLPREVGNLKYLDSLSLDGNNLIGS 274
            L L  N++    P    +L NL  L L SNQL  L      +L  L  L L  N L   
Sbjct: 44  ILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQL-TV 102

Query: 275 IPPTI-GYLTNLTSLNLGYNQLSSSIPPELMNCSQLQNLVLSHNTLSGIVPPEIGNLTHL 333
           +P  +   L +L  L +  N+L+  +P  +   + L +L L  N L  I       L+ L
Sbjct: 103 LPSAVFDRLVHLKELFMCCNKLTE-LPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSL 161

Query: 334 RQLDLSHN 341
               L  N
Sbjct: 162 THAYLFGN 169

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} Length = 229

 Score = 64.3 bits (157), Expect = 4e-12
 Identities = 43/129 (33%), Positives = 58/129 (44%), Gaps = 3/129 (2%)

Query: 190 DSLLLNRNSLTGPIPSTIGYLNLGGKLDLSHNRLDSPIPPTI-GNLTNLTSLDLSSNQLS 248
             L L+ N +T   P     L    +L L  N+L + +P  +  +LT LT LDL +NQL+
Sbjct: 43  QILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGA-LPVGVFDSLTQLTVLDLGTNQLT 101

Query: 249 GLLPREVGNLKYLDSLSLDGNNLIGSIPPTIGYLTNLTSLNLGYNQLSSSIPPELMNCSQ 308
            L       L +L  L +  N L   +P  I  LT+LT L L  NQL S         S 
Sbjct: 102 VLPSAVFDRLVHLKELFMCCNKL-TELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSS 160

Query: 309 LQNLVLSHN 317
           L +  L  N
Sbjct: 161 LTHAYLFGN 169

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} Length = 229

 Score = 62.0 bits (151), Expect = 2e-11
 Identities = 45/127 (35%), Positives = 61/127 (48%), Gaps = 8/127 (6%)

Query: 217 DLSHNRLDSPIPPTIGNLTNLTSLDLSSNQLSGLLPREVGNLKYLDSLSLDGNNLIGSIP 276
           D    R  S +P  I   TN   L L  NQ++ L P    +L  L  L L  N L G++P
Sbjct: 25  DCRSKRHAS-VPAGI--PTNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQL-GALP 80

Query: 277 PTI-GYLTNLTSLNLGYNQLSSSIPPELMNC-SQLQNLVLSHNTLSGIVPPEIGNLTHLR 334
             +   LT LT L+LG NQL + +P  + +    L+ L +  N L+ + P  I  LTHL 
Sbjct: 81  VGVFDSLTQLTVLDLGTNQL-TVLPSAVFDRLVHLKELFMCCNKLTEL-PRGIERLTHLT 138

Query: 335 QLDLSHN 341
            L L  N
Sbjct: 139 HLALDQN 145

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} Length = 229

 Score = 56.6 bits (137), Expect = 2e-09
 Identities = 44/141 (31%), Positives = 59/141 (41%), Gaps = 5/141 (3%)

Query: 107 IPSSIGNLTNLTHLDLSLNQLSGRLPQEVGNLKNLLSLFLDNNNLTGPIPSTLYHLNQLS 166
           +P+ I   TN   L L  NQ++   P    +L NL  L+L +N L          L QL+
Sbjct: 34  VPAGI--PTNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLT 91

Query: 167 NLYLAYNNLVGPLPKEV-GNMKNLDSLLLNRNSLTGPIPSTIGYLNLGGKLDLSHNRLDS 225
            L L  N L   LP  V   + +L  L +  N LT  +P  I  L     L L  N+L S
Sbjct: 92  VLDLGTNQLTV-LPSAVFDRLVHLKELFMCCNKLTE-LPRGIERLTHLTHLALDQNQLKS 149

Query: 226 PIPPTIGNLTNLTSLDLSSNQ 246
                   L++LT   L  N 
Sbjct: 150 IPHGAFDRLSSLTHAYLFGNP 170

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} Length = 229

 Score = 55.5 bits (134), Expect = 5e-09
 Identities = 41/128 (32%), Positives = 53/128 (41%), Gaps = 3/128 (2%)

Query: 143 SLFLDNNNLTGPIPSTLYHLNQLSNLYLAYNNLVGPLPKEV-GNMKNLDSLLLNRNSLTG 201
            L+L +N +T   P     L  L  LYL  N L   LP  V  ++  L  L L  N LT 
Sbjct: 44  ILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGA-LPVGVFDSLTQLTVLDLGTNQLTV 102

Query: 202 PIPSTIGYLNLGGKLDLSHNRLDSPIPPTIGNLTNLTSLDLSSNQLSGLLPREVGNLKYL 261
              +    L    +L +  N+L   +P  I  LT+LT L L  NQL  +       L  L
Sbjct: 103 LPSAVFDRLVHLKELFMCCNKLTE-LPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSL 161

Query: 262 DSLSLDGN 269
               L GN
Sbjct: 162 THAYLFGN 169

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} Length = 229

 Score = 46.2 bits (110), Expect = 6e-06
 Identities = 27/86 (31%), Positives = 40/86 (46%), Gaps = 3/86 (3%)

Query: 42  LSKLEELALPYNSLTGTIPAEI-GSLRNLVELDLSNNILNGSIPLEFGNLKDLDALRLRG 100
           L++L  L L  N LT  +P+ +   L +L EL +  N L   +P     L  L  L L  
Sbjct: 87  LTQLTVLDLGTNQLT-VLPSAVFDRLVHLKELFMCCNKLT-ELPRGIERLTHLTHLALDQ 144

Query: 101 NKLDGLIPSSIGNLTNLTHLDLSLNQ 126
           N+L  +   +   L++LTH  L  N 
Sbjct: 145 NQLKSIPHGAFDRLSSLTHAYLFGNP 170

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 70.8 bits (174), Expect = 1e-13
 Identities = 67/344 (19%), Positives = 122/344 (35%), Gaps = 63/344 (18%)

Query: 44  KLEELALPYNSLTGT----IPAEIGSLRNLVELDLSNNILNGS-IPLEFGNLKD----LD 94
           K+++L+L    LTG     + + + +L  L EL LS+N+L  + + L    L D    L+
Sbjct: 86  KIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLE 145

Query: 95  ALRLRGNKLD----GLIPSSIGNLTNLTHLDLSLNQLSGRLPQEVG-----NLKNLLSLF 145
            L+L    L       + S +    +   L +S N ++    + +      +   L +L 
Sbjct: 146 KLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALK 205

Query: 146 LDNNNLT----GPIPSTLYHLNQLSNLYLAYNNLVGPLPKEVGNMKNLDSLLLNRNSLTG 201
           L++  +T      +   +     L  L L  N L      +VG  +    LL   + L  
Sbjct: 206 LESCGVTSDNCRDLCGIVASKASLRELALGSNKL-----GDVGMAELCPGLLHPSSRLR- 259

Query: 202 PIPSTIGYLNLGGKLDLSHNRLDSP----IPPTIGNLTNLTSLDLSSNQLS-----GLLP 252
                         L +    + +     +   +    +L  L L+ N+L       L  
Sbjct: 260 -------------TLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCE 306

Query: 253 REVGNLKYLDSLSLDGNNL----IGSIPPTIGYLTNLTSLNLGYNQLSSSIPPEL----- 303
             +     L+SL +   +            +     L  L +  N+L  +   EL     
Sbjct: 307 TLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLG 366

Query: 304 MNCSQLQNLVLSHNTLSGIVPPEIG----NLTHLRQLDLSHNFI 343
              S L+ L L+   +S      +         LR+LDLS+N +
Sbjct: 367 QPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCL 410

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 69.2 bits (170), Expect = 5e-13
 Identities = 62/313 (19%), Positives = 109/313 (34%), Gaps = 55/313 (17%)

Query: 67  RNLVELDLSNNILNGSIPLEFG-NLKDLDALRLRGNKLD----GLIPSSIGNLTNLTHLD 121
            ++  LD+    L+ +   E    L+    +RL    L       I S++     L  L+
Sbjct: 3   LDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELN 62

Query: 122 LSLNQLSGRLPQEVGNL-----KNLLSLFLDNNNLT----GPIPSTLYHLNQLSNLYLAY 172
           L  N+L       V          +  L L N  LT    G + STL  L  L  L+L+ 
Sbjct: 63  LRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSD 122

Query: 173 NNLVGPLPKEVGNMKNLDSLLLNRNSLTGPIPSTIGYLNLGGKLDLSHNRLDS----PIP 228
           N L      + G     + LL  +  L               KL L +  L +    P+ 
Sbjct: 123 NLL-----GDAGLQLLCEGLLDPQCRLE--------------KLQLEYCSLSAASCEPLA 163

Query: 229 PTIGNLTNLTSLDLSSNQLSG-----LLPREVGNLKYLDSLSLDGNNL----IGSIPPTI 279
             +    +   L +S+N ++      L      +   L++L L+   +       +   +
Sbjct: 164 SVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIV 223

Query: 280 GYLTNLTSLNLGYNQLSSS-----IPPELMNCSQLQNLVLSHNTLSGIVPPEIG----NL 330
               +L  L LG N+L         P  L   S+L+ L +    ++     ++       
Sbjct: 224 ASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAK 283

Query: 331 THLRQLDLSHNFI 343
             L++L L+ N +
Sbjct: 284 ESLKELSLAGNEL 296

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 49.2 bits (118), Expect = 1e-06
 Identities = 37/181 (20%), Positives = 61/181 (33%), Gaps = 23/181 (12%)

Query: 187 KNLDSLLLNRNSLTGP-IPSTIGYLNLGGKLDLSHNRLD----SPIPPTIGNLTNLTSLD 241
            ++ SL +    L+       +  L     + L    L       I   +     L  L+
Sbjct: 3   LDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELN 62

Query: 242 LSSNQLSG-----LLPREVGNLKYLDSLSLDGNNL----IGSIPPTIGYLTNLTSLNLGY 292
           L SN+L       +L         +  LSL    L     G +  T+  L  L  L+L  
Sbjct: 63  LRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSD 122

Query: 293 NQLSSS-----IPPELMNCSQLQNLVLSHNTLSGIVPPEIG----NLTHLRQLDLSHNFI 343
           N L  +         L    +L+ L L + +LS      +          ++L +S+N I
Sbjct: 123 NLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDI 182

Query: 344 N 344
           N
Sbjct: 183 N 183

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 46.1 bits (110), Expect = 1e-05
 Identities = 47/232 (20%), Positives = 76/232 (32%), Gaps = 47/232 (20%)

Query: 44  KLEELALPYNSLT----GTIPAEIGSLRNLVELDLSNNILNGS-----IPLEFGNLKDLD 94
           +LE L L    +T      +   + S  +L EL L +N L         P        L 
Sbjct: 200 QLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLR 259

Query: 95  ALRLRGNKLD----GLIPSSIGNLTNLTHLDLSLNQLSGRLPQEVGNL-----KNLLSLF 145
            L +    +     G +   +    +L  L L+ N+L     + +          L SL+
Sbjct: 260 TLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLW 319

Query: 146 LDNNNLTG----PIPSTLYHLNQLSNLYLAYNNLVGPLPKEVGNMKNLDSLLLNRNS-LT 200
           + + + T        S L     L  L ++ N L      E   ++ L   L    S L 
Sbjct: 320 VKSCSFTAACCSHFSSVLAQNRFLLELQISNNRL------EDAGVRELCQGLGQPGSVLR 373

Query: 201 GPIPSTIGYLNLGGKLDLSHNRLD----SPIPPTIGNLTNLTSLDLSSNQLS 248
                          L L+   +     S +  T+    +L  LDLS+N L 
Sbjct: 374 --------------VLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLG 411

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A Length = 272

 Score = 67.7 bits (166), Expect = 5e-13
 Identities = 54/177 (30%), Positives = 78/177 (44%), Gaps = 10/177 (5%)

Query: 167 NLYLAYNNLVGPLPKEVGNMKNLDSLLLNRNSLTGPIPSTIGYLNLGGKLDLSHNRLDSP 226
              L   ++   + +    + ++D ++ N + +       I YL     L L  N+L   
Sbjct: 23  KANLKKKSVTDAVTQN--ELNSIDQIIANNSDIKSVQG--IQYLPNVRYLALGGNKLHDI 78

Query: 227 IPPTIGNLTNLTSLDLSSNQLSGLLPREVGNLKYLDSLSLDGNNLIGSIPPTI-GYLTNL 285
               +  LTNLT L L+ NQL  L       L  L  L L  N L  S+P  +   LTNL
Sbjct: 79  --SALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQL-QSLPDGVFDKLTNL 135

Query: 286 TSLNLGYNQLSSSIPPELMNC-SQLQNLVLSHNTLSGIVPPEIGNLTHLRQLDLSHN 341
           T LNL +NQL  S+P  + +  + L  L LS+N L  +       LT L+ L L  N
Sbjct: 136 TYLNLAHNQL-QSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQN 191

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A Length = 272

 Score = 65.0 bits (159), Expect = 4e-12
 Identities = 51/160 (31%), Positives = 71/160 (44%), Gaps = 8/160 (5%)

Query: 42  LSKLEELALPYNSLTGTIPAEIGSLRNLVELDLSNNILNGSIPLEFGNLKDLDALRLRGN 101
           L+ ++++    + +  ++   I  L N+  L L  N L+  I      L +L  L L GN
Sbjct: 40  LNSIDQIIANNSDIK-SVQG-IQYLPNVRYLALGGNKLH-DISA-LKELTNLTYLILTGN 95

Query: 102 KLDGLIPSSIGNLTNLTHLDLSLNQLSGRLPQEVGN-LKNLLSLFLDNNNLTGPIPSTLY 160
           +L  L       LTNL  L L  NQL   LP  V + L NL  L L +N L         
Sbjct: 96  QLQSLPNGVFDKLTNLKELVLVENQLQ-SLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFD 154

Query: 161 HLNQLSNLYLAYNNLVGPLPKEV-GNMKNLDSLLLNRNSL 199
            L  L+ L L+YN L   LP+ V   +  L  L L +N L
Sbjct: 155 KLTNLTELDLSYNQLQS-LPEGVFDKLTQLKDLRLYQNQL 193

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A Length = 272

 Score = 48.5 bits (116), Expect = 1e-06
 Identities = 26/125 (20%), Positives = 47/125 (37%), Gaps = 9/125 (7%)

Query: 217 DLSHNRLDSPIPPTIGNLTNLTSLDLSSNQLSGLLPREVGNLKYLDSLSLDGNNLIGSIP 276
            +S        P            +L    ++  + +    L  +D +  + +++     
Sbjct: 4   TVSTPIKQI-FPDDA--FAETIKANLKKKSVTDAVTQN--ELNSIDQIIANNSDI--KSV 56

Query: 277 PTIGYLTNLTSLNLGYNQLSSSIPPELMNCSQLQNLVLSHNTLSGIVPPEIGNLTHLRQL 336
             I YL N+  L LG N+L       L   + L  L+L+ N L  +       LT+L++L
Sbjct: 57  QGIQYLPNVRYLALGGNKLHD--ISALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKEL 114

Query: 337 DLSHN 341
            L  N
Sbjct: 115 VLVEN 119

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386

 Score = 64.7 bits (158), Expect = 1e-11
 Identities = 49/326 (15%), Positives = 92/326 (28%), Gaps = 63/326 (19%)

Query: 67  RNLVELDLSNNILNG----SIPLEFGNLKDLDALRLRGNKLDG----LIPSSIGNLTNLT 118
            ++    L  + +      S+         +  + L GN +       +  +I +  +L 
Sbjct: 4   FSIEGKSLKLDAITTEDEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLE 63

Query: 119 HLDLSLNQLSGRLPQEVGNLKNLLSLFLDNNNLTGPIPSTLYHLNQLSNLYLAYNNL--- 175
             + S         +    L+ LL   L    L                + L+ N     
Sbjct: 64  IAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLH--------------TVRLSDNAFGPT 109

Query: 176 -VGPLPKEVGNMKNLDSLLLNRNS------------LTGPIPSTIGYLNLG-GKLDLSHN 221
              PL   +     L+ L L+ N             L     +           +    N
Sbjct: 110 AQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRN 169

Query: 222 RLDSP----IPPTIGNLTNLTSLDLSSNQL-----SGLLPREVGNLKYLDSLSLDGNNL- 271
           RL++        T  +   L ++ +  N +       LL   +   + L  L L  N   
Sbjct: 170 RLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFT 229

Query: 272 ---IGSIPPTIGYLTNLTSLNLGYNQLSS----SIPPELMNCS--QLQNLVLSHNTLSGI 322
                ++   +    NL  L L    LS+    ++           LQ L L +N +   
Sbjct: 230 HLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELD 289

Query: 323 VPPEIG-----NLTHLRQLDLSHNFI 343
               +       +  L  L+L+ N  
Sbjct: 290 AVRTLKTVIDEKMPDLLFLELNGNRF 315

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386

 Score = 55.9 bits (135), Expect = 8e-09
 Identities = 57/330 (17%), Positives = 92/330 (27%), Gaps = 81/330 (24%)

Query: 35  IPSEIGALSKLEELALPYNSLTGT----IPAEIGSLRNLVELDLSNNILNGSIPLEFGNL 90
           + + +     ++E+ L  N++       +   I S ++L   + S+             L
Sbjct: 24  VFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEAL 83

Query: 91  KD----------LDALRLRGNKLDG----LIPSSIGNLTNLTHLDLSLNQLS-------- 128
           +           L  +RL  N         +   +   T L HL L  N L         
Sbjct: 84  RLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIA 143

Query: 129 -----GRLPQEVGNLKNLLSLFLDNNNLTGP----IPSTLYHLNQLSNLYLAYNNLVGPL 179
                  + ++  N   L S+    N L          T      L  + +  N +    
Sbjct: 144 RALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGI---- 199

Query: 180 PKEVGNMKNLDSLLLNRNSLTGPIPSTIGYLNLGGKLDLSHNRLD----SPIPPTIGNLT 235
            +  G    L   L     L                LDL  N       S +   + +  
Sbjct: 200 -RPEGIEHLLLEGLAYCQELK--------------VLDLQDNTFTHLGSSALAIALKSWP 244

Query: 236 NLTSLDLSSNQLSGLLPREVGNLKYLDSLSLDGNNLIGSIPPTIGYLTNLTSLNLGYNQL 295
           NL  L L+   LS       G    +D+ S   N               L +L L YN++
Sbjct: 245 NLRELGLNDCLLS-----ARGAAAVVDAFSKLEN-------------IGLQTLRLQYNEI 286

Query: 296 SSSIPPEL-----MNCSQLQNLVLSHNTLS 320
                  L          L  L L+ N  S
Sbjct: 287 ELDAVRTLKTVIDEKMPDLLFLELNGNRFS 316

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens} Length = 193

 Score = 61.9 bits (151), Expect = 2e-11
 Identities = 33/105 (31%), Positives = 52/105 (49%), Gaps = 5/105 (4%)

Query: 215 KLDLSHNRLDSPIPPTIGNLTNLTSLDLSSNQLSGLLPREVGNLKYLDSLSLDGNNLIGS 274
           +L L  N+    +P  + N  +LT +DLS+N++S L  +   N+  L +L L  N L   
Sbjct: 35  ELYLDGNQFTL-VPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRL-RC 92

Query: 275 IPPTI-GYLTNLTSLNLGYNQLSSSIPPELM-NCSQLQNLVLSHN 317
           IPP     L +L  L+L  N + S +P     + S L +L +  N
Sbjct: 93  IPPRTFDGLKSLRLLSLHGNDI-SVVPEGAFNDLSALSHLAIGAN 136

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens} Length = 193

 Score = 56.9 bits (138), Expect = 8e-10
 Identities = 37/123 (30%), Positives = 56/123 (45%), Gaps = 9/123 (7%)

Query: 54  SLTGTIPAEIGSLRNLVELDLSNNILNGSIPLEFGNLKDLDALRLRGNKLDGLIPSSIGN 113
            L   +P  I    ++ EL L  N     +P E  N K L  + L  N++  L   S  N
Sbjct: 21  GLK-VLPKGIPR--DVTELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFSN 76

Query: 114 LTNLTHLDLSLNQLSGRLPQEV-GNLKNLLSLFLDNNNLTGPIPSTLY-HLNQLSNLYLA 171
           +T L  L LS N+L   +P      LK+L  L L  N+++  +P   +  L+ LS+L + 
Sbjct: 77  MTQLLTLILSYNRLR-CIPPRTFDGLKSLRLLSLHGNDISV-VPEGAFNDLSALSHLAI- 133

Query: 172 YNN 174
             N
Sbjct: 134 GAN 136

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens} Length = 193

 Score = 56.5 bits (137), Expect = 1e-09
 Identities = 34/109 (31%), Positives = 54/109 (49%), Gaps = 5/109 (4%)

Query: 235 TNLTSLDLSSNQLSGLLPREVGNLKYLDSLSLDGNNLIGSIPP-TIGYLTNLTSLNLGYN 293
            ++T L L  NQ + L+P+E+ N K+L  + L  NN I ++   +   +T L +L L YN
Sbjct: 31  RDVTELYLDGNQFT-LVPKELSNYKHLTLIDLS-NNRISTLSNQSFSNMTQLLTLILSYN 88

Query: 294 QLSSSIPPEL-MNCSQLQNLVLSHNTLSGIVPPEIGNLTHLRQLDLSHN 341
           +L   IPP        L+ L L  N +S +      +L+ L  L +  N
Sbjct: 89  RL-RCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGAN 136

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens} Length = 193

 Score = 46.5 bits (111), Expect = 3e-06
 Identities = 36/142 (25%), Positives = 59/142 (41%), Gaps = 29/142 (20%)

Query: 107 IPSSIGNLTNLTHLDLSLNQLSGRLPQEVGNLKNLLSLFLDNNNLTGPIPSTLYHLNQLS 166
           +P  I    ++T L L  NQ +  +P+E+ N K+L  + L NN ++     +  ++ QL 
Sbjct: 25  LPKGIP--RDVTELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLL 81

Query: 167 NLYLAYNNLVGPLPKEVGNMKNLDSLLLNRNSLTGPIPSTIGYLNLGGKLDLSHNRLDSP 226
            L L+YN L   +P         D L     SL                L L  N +   
Sbjct: 82  TLILSYNRL-RCIPPRT-----FDGL----KSLR--------------LLSLHGNDISV- 116

Query: 227 IPPTI-GNLTNLTSLDLSSNQL 247
           +P     +L+ L+ L + +N L
Sbjct: 117 VPEGAFNDLSALSHLAIGANPL 138

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens} Length = 193

 Score = 41.9 bits (99), Expect = 1e-04
 Identities = 30/105 (28%), Positives = 47/105 (44%), Gaps = 19/105 (18%)

Query: 274 SIPPTIGYLTNLTSLNLGYNQLSSSIPPELMNCSQLQNLVLSHNTLSGIVPPEIGNLTHL 333
            +P  I    ++T L L  NQ +  +P EL N   L  + LS+N +S +      N+T L
Sbjct: 24  VLPKGIP--RDVTELYLDGNQFTL-VPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQL 80

Query: 334 RQLDLSHNFINGTIPSQLGYIP--------NISAVDLSKNNLSGV 370
             L LS+N        +L  IP        ++  + L  N++S V
Sbjct: 81  LTLILSYN--------RLRCIPPRTFDGLKSLRLLSLHGNDISVV 117

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 64.0 bits (155), Expect = 2e-11
 Identities = 25/102 (24%), Positives = 40/102 (39%), Gaps = 4/102 (3%)

Query: 220 HNRLDSPIPPTIGNLTNLTSLDLSSNQLSGLLPREV-GNLKYLDSLSLDGNNLIGSIPP- 277
                      +    NLT L + + Q    L       L  L +L++   + +  + P 
Sbjct: 16  TRDGALDSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIV-KSGLRFVAPD 74

Query: 278 TIGYLTNLTSLNLGYNQLSSSIPPELMNCSQLQNLVLSHNTL 319
              +   L+ LNL +N L  S+  + +    LQ LVLS N L
Sbjct: 75  AFHFTPRLSRLNLSFNAL-ESLSWKTVQGLSLQELVLSGNPL 115

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 62.8 bits (152), Expect = 4e-11
 Identities = 23/96 (23%), Positives = 35/96 (36%), Gaps = 2/96 (2%)

Query: 58  TIPAEIGSLRNLVELDLSNNILNGSIPLE-FGNLKDLDALRLRGNKLDGLIPSSIGNLTN 116
                +    NL EL + N      + L     L +L  L +  + L  + P +      
Sbjct: 22  DSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPR 81

Query: 117 LTHLDLSLNQLSGRLPQEVGNLKNLLSLFLDNNNLT 152
           L+ L+LS N L   L  +     +L  L L  N L 
Sbjct: 82  LSRLNLSFNALE-SLSWKTVQGLSLQELVLSGNPLH 116

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 61.7 bits (149), Expect = 1e-10
 Identities = 20/95 (21%), Positives = 37/95 (38%), Gaps = 2/95 (2%)

Query: 274 SIPPTIGYLTNLTSLNLGYNQLSSSIPPE-LMNCSQLQNLVLSHNTLSGIVPPEIGNLTH 332
                +    NLT L +   Q    +    L    +L+NL +  + L  + P        
Sbjct: 22  DSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPR 81

Query: 333 LRQLDLSHNFINGTIPSQLGYIPNISAVDLSKNNL 367
           L +L+LS N +  ++  +     ++  + LS N L
Sbjct: 82  LSRLNLSFNALE-SLSWKTVQGLSLQELVLSGNPL 115

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 59.8 bits (144), Expect = 5e-10
 Identities = 23/95 (24%), Positives = 36/95 (37%), Gaps = 2/95 (2%)

Query: 107 IPSSIGNLTNLTHLDLSLNQLSGRLPQEV-GNLKNLLSLFLDNNNLTGPIPSTLYHLNQL 165
               +    NLT L +   Q    L       L  L +L +  + L    P   +   +L
Sbjct: 23  SLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRL 82

Query: 166 SNLYLAYNNLVGPLPKEVGNMKNLDSLLLNRNSLT 200
           S L L++N L   L  +     +L  L+L+ N L 
Sbjct: 83  SRLNLSFNALES-LSWKTVQGLSLQELVLSGNPLH 116

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 54.4 bits (130), Expect = 3e-08
 Identities = 25/117 (21%), Positives = 35/117 (29%), Gaps = 24/117 (20%)

Query: 155 IPSTLYHLNQLSNLYLAYNNLVGPLPKEVGNMKNLDSLLLNRNSLTGPIPSTIGYLNLGG 214
               L     L+ LY+     +  L      ++ L  L                      
Sbjct: 23  SLHHLPGAENLTELYIENQQHLQHLELRD--LRGLGELR--------------------- 59

Query: 215 KLDLSHNRLDSPIPPTIGNLTNLTSLDLSSNQLSGLLPREVGNLKYLDSLSLDGNNL 271
            L +  + L    P        L+ L+LS N L  L  + V  L  L  L L GN L
Sbjct: 60  NLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNALESLSWKTVQGLS-LQELVLSGNPL 115

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 51.3 bits (122), Expect = 3e-07
 Identities = 21/96 (21%), Positives = 33/96 (34%), Gaps = 4/96 (4%)

Query: 34  RIPSEIGALSKLEELALPYNSLTGTIPAE-IGSLRNLVELDLSNNILNGSIPLE-FGNLK 91
                +     L EL +        +    +  L  L  L +  + L   +  + F    
Sbjct: 22  DSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLR-FVAPDAFHFTP 80

Query: 92  DLDALRLRGNKLDGLIPSSIGNLTNLTHLDLSLNQL 127
            L  L L  N L+ L   ++  L +L  L LS N L
Sbjct: 81  RLSRLNLSFNALESLSWKTVQGL-SLQELVLSGNPL 115

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 50.9 bits (121), Expect = 3e-07
 Identities = 24/102 (23%), Positives = 38/102 (37%), Gaps = 2/102 (1%)

Query: 124 LNQLSGRLPQEVGNLKNLLSLFLDNNNLTGPIPS-TLYHLNQLSNLYLAYNNLVGPLPKE 182
               +      +   +NL  L+++N      +    L  L +L NL +  + L    P  
Sbjct: 16  TRDGALDSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDA 75

Query: 183 VGNMKNLDSLLLNRNSLTGPIPSTIGYLNLGGKLDLSHNRLD 224
                 L  L L+ N+L      T+  L+L   L LS N L 
Sbjct: 76  FHFTPRLSRLNLSFNALESLSWKTVQGLSLQE-LVLSGNPLH 116

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 48.6 bits (115), Expect = 2e-06
 Identities = 14/81 (17%), Positives = 27/81 (33%), Gaps = 1/81 (1%)

Query: 293 NQLSSSIPPELMNCSQLQNLVLSHNTLSGIVPPE-IGNLTHLRQLDLSHNFINGTIPSQL 351
              +      L     L  L + +      +    +  L  LR L +  + +    P   
Sbjct: 17  RDGALDSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAF 76

Query: 352 GYIPNISAVDLSKNNLSGVVP 372
            + P +S ++LS N L  +  
Sbjct: 77  HFTPRLSRLNLSFNALESLSW 97

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri} Length = 208

 Score = 61.6 bits (150), Expect = 3e-11
 Identities = 44/129 (34%), Positives = 58/129 (44%), Gaps = 4/129 (3%)

Query: 215 KLDLSHNRLDSPIPPTIGNLTNLTSLDLSSNQLSGLLPREVGNLKYLDSLSLDGNNLIGS 274
            LDL  N L S        LT+LT L L  N+L  L       L  L  L+L  N L  S
Sbjct: 32  YLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQL-QS 90

Query: 275 IPPTI-GYLTNLTSLNLGYNQLSSSIPPELMN-CSQLQNLVLSHNTLSGIVPPEIGNLTH 332
           +P  +   LT L  L L  NQL  S+P  + +  +QL++L L  N L  +       LT 
Sbjct: 91  LPNGVFDKLTQLKELALNTNQL-QSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTS 149

Query: 333 LRQLDLSHN 341
           L+ + L  N
Sbjct: 150 LQYIWLHDN 158

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri} Length = 208

 Score = 61.2 bits (149), Expect = 4e-11
 Identities = 43/141 (30%), Positives = 54/141 (38%), Gaps = 5/141 (3%)

Query: 35  IPSEIGALSKLEELALPYNSLTGTIPAEIGSLRNLVELDLSNNILNGSIPLEFGNLKDLD 94
           +P+ I A  +   L L  NSL          L +L +L L  N L       F  L  L 
Sbjct: 22  VPTGIPA--QTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLT 79

Query: 95  ALRLRGNKLDGLIPSSIGNLTNLTHLDLSLNQLSGRLPQEV-GNLKNLLSLFLDNNNLTG 153
            L L  N+L  L       LT L  L L+ NQL   LP  V   L  L  L L  N L  
Sbjct: 80  YLNLSTNQLQSLPNGVFDKLTQLKELALNTNQLQ-SLPDGVFDKLTQLKDLRLYQNQLKS 138

Query: 154 PIPSTLYHLNQLSNLYLAYNN 174
                   L  L  ++L ++N
Sbjct: 139 VPDGVFDRLTSLQYIWL-HDN 158

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri} Length = 208

 Score = 58.5 bits (142), Expect = 3e-10
 Identities = 46/131 (35%), Positives = 61/131 (46%), Gaps = 6/131 (4%)

Query: 190 DSLLLNRNSLTGPIPSTIGYLNLGGKLDLSHNRLDSPIPPTIGN-LTNLTSLDLSSNQLS 248
             L L  NSL          L    +L L  N+L S +P  + N LT+LT L+LS+NQL 
Sbjct: 31  TYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQS-LPNGVFNKLTSLTYLNLSTNQLQ 89

Query: 249 GLLPREVGNLKYLDSLSLDGNNLIGSIPPTI-GYLTNLTSLNLGYNQLSSSIPPELM-NC 306
            L       L  L  L+L+ N L  S+P  +   LT L  L L  NQL  S+P  +    
Sbjct: 90  SLPNGVFDKLTQLKELALNTNQL-QSLPDGVFDKLTQLKDLRLYQNQL-KSVPDGVFDRL 147

Query: 307 SQLQNLVLSHN 317
           + LQ + L  N
Sbjct: 148 TSLQYIWLHDN 158

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri} Length = 208

 Score = 56.2 bits (136), Expect = 2e-09
 Identities = 43/127 (33%), Positives = 57/127 (44%), Gaps = 7/127 (5%)

Query: 217 DLSHNRLDSPIPPTIGNLTNLTSLDLSSNQLSGLLPREVGNLKYLDSLSLDGNNLIGSIP 276
           +       S +P  I      T LDL +N L  L       L  L  L L GN L  S+P
Sbjct: 13  ECYSQGRTS-VPTGIP--AQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKL-QSLP 68

Query: 277 PTI-GYLTNLTSLNLGYNQLSSSIPPELMNC-SQLQNLVLSHNTLSGIVPPEIGNLTHLR 334
             +   LT+LT LNL  NQL  S+P  + +  +QL+ L L+ N L  +       LT L+
Sbjct: 69  NGVFNKLTSLTYLNLSTNQL-QSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLK 127

Query: 335 QLDLSHN 341
            L L  N
Sbjct: 128 DLRLYQN 134

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri} Length = 208

 Score = 51.6 bits (124), Expect = 8e-08
 Identities = 44/119 (36%), Positives = 54/119 (45%), Gaps = 6/119 (5%)

Query: 59  IPAEIGSLRNLVELDLSNNILNGSIPLEFGNLKDLDALRLRGNKLDGLIPSSIGNLTNLT 118
           +P  I +      LDL  N L       F  L  L  L L GNKL  L       LT+LT
Sbjct: 22  VPTGIPA--QTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLT 79

Query: 119 HLDLSLNQLSGRLPQEV-GNLKNLLSLFLDNNNLTGPIPSTLY-HLNQLSNLYLAYNNL 175
           +L+LS NQL   LP  V   L  L  L L+ N L   +P  ++  L QL +L L  N L
Sbjct: 80  YLNLSTNQLQ-SLPNGVFDKLTQLKELALNTNQLQS-LPDGVFDKLTQLKDLRLYQNQL 136

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri} Length = 208

 Score = 49.7 bits (119), Expect = 3e-07
 Identities = 46/156 (29%), Positives = 52/156 (33%), Gaps = 26/156 (16%)

Query: 92  DLDALRLRGNKLDGLIPSSIGNLTNLTHLDLSLNQLSGRLPQEVGN-LKNLLSLFLDNNN 150
               L L  N L  L       LT+LT L L  N+L   LP  V N L +L  L L  N 
Sbjct: 29  QTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQ-SLPNGVFNKLTSLTYLNLSTNQ 87

Query: 151 LTGPIPSTLYHLNQLSNLYLAYNNLVGPLPKEVGNMKNLDSLLLNRNSLTGPIPSTIGYL 210
           L          L QL  L L  N L   LP  V      D L      L           
Sbjct: 88  LQSLPNGVFDKLTQLKELALNTNQLQS-LPDGV-----FDKL----TQLK---------- 127

Query: 211 NLGGKLDLSHNRLDSPIPPTIGNLTNLTSLDLSSNQ 246
                L L  N+L S        LT+L  + L  N 
Sbjct: 128 ----DLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNP 159

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri} Length = 208

 Score = 41.6 bits (98), Expect = 2e-04
 Identities = 31/96 (32%), Positives = 44/96 (45%), Gaps = 10/96 (10%)

Query: 262 DSLSLDGNNLIGSIPPTIGYLTNLTSLNLGYNQLSSSIPPELMNC-SQLQNLVLSHNTLS 320
             L L+ N+L          LT+LT L LG N+L  S+P  + N  + L  L LS N L 
Sbjct: 31  TYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKL-QSLPNGVFNKLTSLTYLNLSTNQLQ 89

Query: 321 GIVPPEIGNLTHLRQLDLSHNFINGTIPSQLGYIPN 356
            +       LT L++L L+ N        QL  +P+
Sbjct: 90  SLPNGVFDKLTQLKELALNTN--------QLQSLPD 117

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198

 Score = 58.2 bits (141), Expect = 4e-10
 Identities = 31/128 (24%), Positives = 55/128 (42%), Gaps = 7/128 (5%)

Query: 215 KLDLSHNRLDSPIPPTIGNLTNLTSLDLSSNQLSGLLPREVGNLKYLDSLSLDGNNLIGS 274
           +L      ++  +  T+  L     L LS+N +  +    +  ++ L  LSL G NLI  
Sbjct: 29  ELHGMIPPIEK-MDATLSTLKACKHLALSTNNIEKI--SSLSGMENLRILSL-GRNLIKK 84

Query: 275 IPPTIGYLTNLTSLNLGYNQLSSSIPPELMNCSQLQNLVLSHNTLSGIVPPE-IGNLTHL 333
           I         L  L + YNQ++S +   +     L+ L +S+N ++     + +  L  L
Sbjct: 85  IENLDAVADTLEELWISYNQIAS-LSG-IEKLVNLRVLYMSNNKITNWGEIDKLAALDKL 142

Query: 334 RQLDLSHN 341
             L L+ N
Sbjct: 143 EDLLLAGN 150

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198

 Score = 50.8 bits (122), Expect = 1e-07
 Identities = 33/136 (24%), Positives = 57/136 (41%), Gaps = 20/136 (14%)

Query: 215 KLDLSHNRLDSPIPPTIGNLTNLTSLDLSSNQLSGL--LPREVGNLKYLDSLSLDGNNLI 272
            L LS N ++  I   +  + NL  L L  N +  +  L      L+ L  +S    N I
Sbjct: 52  HLALSTNNIEK-ISS-LSGMENLRILSLGRNLIKKIENLDAVADTLEELW-IS---YNQI 105

Query: 273 GSIPPTIGYLTNLTSLNLGYNQLSS-SIPPELMNCSQLQNLVLSHNTLSGIVPPE----- 326
            S+   I  L NL  L +  N++++     +L    +L++L+L+ N L            
Sbjct: 106 ASLSG-IEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSE 164

Query: 327 -----IGNLTHLRQLD 337
                +  L +L++LD
Sbjct: 165 YRIEVVKRLPNLKKLD 180

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198

 Score = 48.5 bits (116), Expect = 6e-07
 Identities = 29/177 (16%), Positives = 64/177 (36%), Gaps = 32/177 (18%)

Query: 85  LEFGNLKDLDALRLRGNKLDGLIPSSIGNLTNLTHLDLSLNQLSGRLPQEVGNLKNLLSL 144
           +     + ++ L      ++  + +++  L    HL LS N +  ++   +  ++NL  L
Sbjct: 20  VVATEAEKVE-LHGMIPPIEK-MDATLSTLKACKHLALSTNNIE-KI-SSLSGMENLRIL 75

Query: 145 FLDNNNLTGPIPSTLYHLNQLSNLYLAYNNLVGPLPKEVGNMKNLDSLLLNRNSLTGPIP 204
            L  N +   I +     + L  L+++YN +       +  ++ L +L            
Sbjct: 76  SLGRNLIKK-IENLDAVADTLEELWISYNQI-----ASLSGIEKLVNL------------ 117

Query: 205 STIGYLNLGGKLDLSHNRLDSPIP-PTIGNLTNLTSLDLSSNQLSGLLPREVGNLKY 260
                      L +S+N++ +      +  L  L  L L+ N L           +Y
Sbjct: 118 ---------RVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEY 165

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198

 Score = 45.1 bits (107), Expect = 1e-05
 Identities = 24/133 (18%), Positives = 46/133 (34%), Gaps = 6/133 (4%)

Query: 237 LTSLDLSSNQLSGLLPREVGNLKYLDSLSLDGN-NLIGSIPPTIGYLTNLTSLNLGYNQL 295
           +       + +     R+       + + L G    I  +  T+  L     L L  N +
Sbjct: 1   MAKATTIKDAIRIFEERKSVVATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNI 60

Query: 296 SSSIPPELMNCSQLQNLVLSHNTLSGIVPPEIGNLTHLRQLDLSHNFINGTIPSQLGYIP 355
                  L     L+ L L  N +  I   +      L +L +S+N I     S +  + 
Sbjct: 61  EKISS--LSGMENLRILSLGRNLIKKIENLD-AVADTLEELWISYNQI--ASLSGIEKLV 115

Query: 356 NISAVDLSKNNLS 368
           N+  + +S N ++
Sbjct: 116 NLRVLYMSNNKIT 128

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7 Length = 192

 Score = 56.9 bits (138), Expect = 1e-09
 Identities = 32/107 (29%), Positives = 49/107 (45%), Gaps = 7/107 (6%)

Query: 215 KLDLSHNRLDSPIPPT--IGNLTNLTSLDLSSNQLSGLLPREVGNLKYLDSLSLDGNNLI 272
           +L L+ N L   I      G L +L  L+L  NQL+G+ P       ++  L L  N + 
Sbjct: 33  ELLLNDNELGR-ISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKI- 90

Query: 273 GSIPPTI-GYLTNLTSLNLGYNQLSSSIPPELM-NCSQLQNLVLSHN 317
             I   +   L  L +LNL  NQ+ S + P    + + L +L L+ N
Sbjct: 91  KEISNKMFLGLHQLKTLNLYDNQI-SCVMPGSFEHLNSLTSLNLASN 136

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7 Length = 192

 Score = 54.6 bits (132), Expect = 5e-09
 Identities = 30/110 (27%), Positives = 51/110 (46%), Gaps = 5/110 (4%)

Query: 235 TNLTSLDLSSNQLSGLLPREV-GNLKYLDSLSLDGNNLIGSIPPTI-GYLTNLTSLNLGY 292
            + T L L+ N+L  +    + G L +L  L L   N +  I P      +++  L LG 
Sbjct: 29  LHTTELLLNDNELGRISSDGLFGRLPHLVKLELK-RNQLTGIEPNAFEGASHIQELQLGE 87

Query: 293 NQLSSSIPPELMN-CSQLQNLVLSHNTLSGIVPPEIGNLTHLRQLDLSHN 341
           N++   I  ++     QL+ L L  N +S ++P    +L  L  L+L+ N
Sbjct: 88  NKI-KEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASN 136

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7 Length = 192

 Score = 54.2 bits (131), Expect = 6e-09
 Identities = 36/124 (29%), Positives = 63/124 (50%), Gaps = 9/124 (7%)

Query: 54  SLTGTIPAEIGSLRNLVELDLSNNILNGSIPLE--FGNLKDLDALRLRGNKLDGLIPSSI 111
            L   IP +I    +  EL L++N L   I  +  FG L  L  L L+ N+L G+ P++ 
Sbjct: 19  GLK-EIPRDIPL--HTTELLLNDNELG-RISSDGLFGRLPHLVKLELKRNQLTGIEPNAF 74

Query: 112 GNLTNLTHLDLSLNQLSGRLPQEV-GNLKNLLSLFLDNNNLTGPIPSTLYHLNQLSNLYL 170
              +++  L L  N++   +  ++   L  L +L L +N ++  +P +  HLN L++L L
Sbjct: 75  EGASHIQELQLGENKIK-EISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNL 133

Query: 171 AYNN 174
             +N
Sbjct: 134 -ASN 136

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7 Length = 192

 Score = 42.3 bits (100), Expect = 7e-05
 Identities = 35/141 (24%), Positives = 58/141 (41%), Gaps = 29/141 (20%)

Query: 107 IPSSIGNLTNLTHLDLSLNQLSGRLPQEV-GNLKNLLSLFLDNNNLTGPIPSTLYHLNQL 165
           IP  I    + T L L+ N+L       + G L +L+ L L  N LTG  P+     + +
Sbjct: 23  IPRDI--PLHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHI 80

Query: 166 SNLYLAYNNLVGPLPKEVGNMKNLDSLLLNRNSLTGPIPSTIGYLNLGGKLDLSHNRLDS 225
             L L  N +   +  ++        L    + L                L+L  N++  
Sbjct: 81  QELQLGENKI-KEISNKM-----FLGL----HQLK--------------TLNLYDNQISC 116

Query: 226 PIPP-TIGNLTNLTSLDLSSN 245
            + P +  +L +LTSL+L+SN
Sbjct: 117 -VMPGSFEHLNSLTSLNLASN 136

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri} Length = 177

 Score = 55.7 bits (135), Expect = 2e-09
 Identities = 36/104 (34%), Positives = 44/104 (42%), Gaps = 2/104 (1%)

Query: 215 KLDLSHNRLDSPIPPTIGNLTNLTSLDLSSNQLSGLLPREVGNLKYLDSLSLDGNNLIGS 274
           +L+L  N+L S        LT LT L LS NQ+  L       L  L  L L  N L  S
Sbjct: 32  RLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKL-QS 90

Query: 275 IPPTI-GYLTNLTSLNLGYNQLSSSIPPELMNCSQLQNLVLSHN 317
           +P  +   LT L  L L  NQL S         + LQ + L  N
Sbjct: 91  LPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTN 134

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri} Length = 177

 Score = 55.3 bits (134), Expect = 3e-09
 Identities = 35/116 (30%), Positives = 44/116 (37%), Gaps = 4/116 (3%)

Query: 35  IPSEIGALSKLEELALPYNSLTGTIPAEIGSLRNLVELDLSNNILNGSIPLE-FGNLKDL 93
           +P+ I +      L L  N L          L  L +L LS N +  S+P   F  L  L
Sbjct: 22  VPTGIPS--SATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQ-SLPDGVFDKLTKL 78

Query: 94  DALRLRGNKLDGLIPSSIGNLTNLTHLDLSLNQLSGRLPQEVGNLKNLLSLFLDNN 149
             L L  NKL  L       LT L  L L  NQL          L +L  ++L  N
Sbjct: 79  TILYLHENKLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTN 134

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri} Length = 177

 Score = 55.0 bits (133), Expect = 3e-09
 Identities = 41/131 (31%), Positives = 61/131 (46%), Gaps = 7/131 (5%)

Query: 213 GGKLDLSHNRLDSPIPPTIGNLTNLTSLDLSSNQLSGLLPREVGNLKYLDSLSLDGNNLI 272
           G ++  +   L S +P  I   ++ T L+L SN+L  L       L  L  LSL  N + 
Sbjct: 9   GTEIRCNSKGLTS-VPTGIP--SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQI- 64

Query: 273 GSIPPTI-GYLTNLTSLNLGYNQLSSSIPPELM-NCSQLQNLVLSHNTLSGIVPPEIGNL 330
            S+P  +   LT LT L L  N+L  S+P  +    +QL+ L L  N L  +       L
Sbjct: 65  QSLPDGVFDKLTKLTILYLHENKL-QSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRL 123

Query: 331 THLRQLDLSHN 341
           T L+++ L  N
Sbjct: 124 TSLQKIWLHTN 134

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri} Length = 177

 Score = 46.9 bits (112), Expect = 2e-06
 Identities = 35/108 (32%), Positives = 45/108 (41%), Gaps = 4/108 (3%)

Query: 92  DLDALRLRGNKLDGLIPSSIGNLTNLTHLDLSLNQLSGRLPQEV-GNLKNLLSLFLDNNN 150
               L L  NKL  L       LT LT L LS NQ+   LP  V   L  L  L+L  N 
Sbjct: 29  SATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQ-SLPDGVFDKLTKLTILYLHENK 87

Query: 151 LTGPIPSTLY-HLNQLSNLYLAYNNLVGPLPKEVGNMKNLDSLLLNRN 197
           L   +P+ ++  L QL  L L  N L          + +L  + L+ N
Sbjct: 88  LQS-LPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTN 134

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* Length = 592

 Score = 57.6 bits (139), Expect = 3e-09
 Identities = 49/332 (14%), Positives = 90/332 (27%), Gaps = 49/332 (14%)

Query: 42  LSKLEELALPYNSLTGTIPAEIGSLRNLVELDLSNNILNGSIPLEFGNLKDLDALRLRGN 101
              L  + +    +   +     +  NL E    +   +  +P ++ NL     L   G 
Sbjct: 219 CRSLVSVKVGDFEIL-ELVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGL 277

Query: 102 KL--DGLIPSSIGNLTNLTHLDLS-LNQLSGRLPQEVGNLKNLLSLFLDNNNLTGPIPST 158
                  +P        +  LDL      +      +    NL  L   N      +   
Sbjct: 278 SYMGPNEMPILFPFAAQIRKLDLLYALLETEDHCTLIQKCPNLEVLETRNVIGDRGLEVL 337

Query: 159 LYHLNQLSNLYLAYNNLVGPLPKEVG------------NMKNLDSLLLNRNSLT------ 200
             +  QL  L +        +  E G              + L+ + +  + +T      
Sbjct: 338 AQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYVSDITNESLES 397

Query: 201 ----GPIPSTIGYLNLGGKLDLSHNRLDSPIPPTIGNLTNLTSLDLSSNQLSGLLPREVG 256
                        + L  +  ++   LD+ +   +     L        Q          
Sbjct: 398 IGTYLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQ---------- 447

Query: 257 NLKYLDSLSLDGNNLIGSIPPTIGYLTNLTSLNLGYNQLS-SSIPPELMNCSQLQNLVLS 315
                  L+  G + IG       Y  N+  + LGY   S   +      C  LQ L + 
Sbjct: 448 -----GGLTDLGLSYIGQ------YSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMR 496

Query: 316 HNTLSGI-VPPEIGNLTHLRQLDLSHNFINGT 346
               S   +   +  L  LR L +     + T
Sbjct: 497 GCCFSERAIAAAVTKLPSLRYLWVQGYRASMT 528

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* Length = 592

 Score = 51.5 bits (123), Expect = 3e-07
 Identities = 44/306 (14%), Positives = 92/306 (30%), Gaps = 29/306 (9%)

Query: 65  SLRNLVELDLSNNILNGSIPLEFGNLKDLDALRLRGNKL--DGLIPSSIGNLTNLTHLDL 122
           ++ NL+  +    +      +   NL+ L ++  R   +    L   +     +L  L L
Sbjct: 87  AMFNLIPENWGGYVTPWVTEI-SNNLRQLKSVHFRRMIVSDLDLDRLAKARADDLETLKL 145

Query: 123 SL-NQLSGRLPQEVG-NLKNLLSLFLDNNNLTGPIPSTLYHLN------QLSNLYLAYNN 174
              +  +      +  + + + +L ++ ++ +      L+ L       ++ N Y+    
Sbjct: 146 DKCSGFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFA 205

Query: 175 LVGP--LPKEVGNMKNLDSLLLNRNSLTGPIPSTIGYLNLGGKLDLSHNRLDSPIPPTIG 232
            + P  L     N ++L S+ +    +   +       NL  +        D  +P    
Sbjct: 206 KISPKDLETIARNCRSLVSVKVGDFEILELVGFFKAAANLE-EFCGGSLNEDIGMPEKYM 264

Query: 233 NLTNLTSLDLSSNQLSGL--LPREVGNLKYLDSLSLDGNNLIG-SIPPTIGYLTNLTSLN 289
           NL     L        G   +P        +  L L    L        I    NL  L 
Sbjct: 265 NLVFPRKLCRLGLSYMGPNEMPILFPFAAQIRKLDLLYALLETEDHCTLIQKCPNLEVLE 324

Query: 290 LGYNQLSSSIPPELMNCSQLQNLVLSHNTLSGIVPPEIGNLT------------HLRQLD 337
                    +      C QL+ L +        +  E G ++             L  + 
Sbjct: 325 TRNVIGDRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMA 384

Query: 338 LSHNFI 343
           +  + I
Sbjct: 385 VYVSDI 390

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* Length = 594

 Score = 57.2 bits (138), Expect = 5e-09
 Identities = 49/394 (12%), Positives = 120/394 (30%), Gaps = 44/394 (11%)

Query: 17  CFPNLESIIIPY-TLLSGRIPSEIGA-LSKLEELALPYNSLTGTIPAEIGSL----RNLV 70
            F N + +++      S    + I A    L+EL L  + +       +        +LV
Sbjct: 128 SFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDTYTSLV 187

Query: 71  ELDLSN---NILNGSIPLEFGNLKDLDALRLRGNKLDGLIPSSIGNLTNLTHLDLSL--- 124
            L++S     +   ++        +L +L+L        + + +     L  L       
Sbjct: 188 SLNISCLASEVSFSALERLVTRCPNLKSLKLNRAVPLEKLATLLQRAPQLEELGTGGYTA 247

Query: 125 ---NQLSGRLPQEVGNLKNLLSLFLDNNNLTGPIPSTLYHLNQLSNLYLAYNNLVGP-LP 180
                +   L   +   K L  L    + +   +P+     ++L+ L L+Y  +    L 
Sbjct: 248 EVRPDVYSGLSVALSGCKELRCLSGFWDAVPAYLPAVYSVCSRLTTLNLSYATVQSYDLV 307

Query: 181 KEVGNMKNLDSLLLNRNSLTGPIPSTIG-------YLNLGGKLDLSHNRL----DSPIPP 229
           K +     L  L +  + +       +         L +               +  +  
Sbjct: 308 KLLCQCPKLQRLWV-LDYIEDAGLEVLASTCKDLRELRVFPSEPFVMEPNVALTEQGLVS 366

Query: 230 TIGNLTNLTSLDLSSNQLSGLLPREVG-NLKYLDSLSLDGNNLIGSIPPTIG-------- 280
                  L S+     Q++      +  N   +    L           T+         
Sbjct: 367 VSMGCPKLESVLYFCRQMTNAALITIARNRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGA 426

Query: 281 ---YLTNLTSLNLGYNQLSSSIPPELMNCSQLQNLVLSH--NTLSGIVPPEIGNLTHLRQ 335
              +  +L  L+L                 +++ L ++   ++  G+    +     LR+
Sbjct: 427 IVEHCKDLRRLSLSGLLTDKVFEYIGTYAKKMEMLSVAFAGDSDLGMH-HVLSGCDSLRK 485

Query: 336 LDLSH-NFINGTIPSQLGYIPNISAVDLSKNNLS 368
           L++    F +  + +    +  + ++ +S  ++S
Sbjct: 486 LEIRDCPFGDKALLANASKLETMRSLWMSSCSVS 519

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* Length = 594

 Score = 50.7 bits (121), Expect = 6e-07
 Identities = 47/306 (15%), Positives = 91/306 (29%), Gaps = 29/306 (9%)

Query: 64  GSLRNLVELDLSNNILNGSIPLEFGNLKDLDALRLRGNKLDGLIPSSIGNLT-------- 115
              R  V +     +   ++   F  ++ ++           L+P   G           
Sbjct: 42  RWCRRKVFIGNCYAVSPATVIRRFPKVRSVELKGKPHFADFNLVPDGWGGYVYPWIEAMS 101

Query: 116 ----NLTHLDLSLNQLSGR-LPQEVGNLKNLLSLFLDN-NNLTGP-IPSTLYHLNQLSNL 168
                L  + L    ++   L     + KN   L L +    +   + +       L  L
Sbjct: 102 SSYTWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKEL 161

Query: 169 YLAYNNLVGPLPKEVGNMKNLDSLL--LNRNSLTGPI-PSTIGYLNLGGK----LDLSHN 221
            L  +++       + +  +  + L  LN + L   +  S +  L         L L+  
Sbjct: 162 DLRESDVDDVSGHWLSHFPDTYTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRA 221

Query: 222 RLDSPIPPTIGNLTNLTSLDLSS------NQLSGLLPREVGNLKYLDSLSLDGNNLIGSI 275
                +   +     L  L            +   L   +   K L  LS   + +   +
Sbjct: 222 VPLEKLATLLQRAPQLEELGTGGYTAEVRPDVYSGLSVALSGCKELRCLSGFWDAVPAYL 281

Query: 276 PPTIGYLTNLTSLNLGYNQLSS-SIPPELMNCSQLQNLVLSHNTLSGIVPPEIGNLTHLR 334
           P      + LT+LNL Y  + S  +   L  C +LQ L +        +         LR
Sbjct: 282 PAVYSVCSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDYIEDAGLEVLASTCKDLR 341

Query: 335 QLDLSH 340
           +L +  
Sbjct: 342 ELRVFP 347

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis} Length = 362

 Score = 55.0 bits (131), Expect = 2e-08
 Identities = 28/208 (13%), Positives = 72/208 (34%), Gaps = 26/208 (12%)

Query: 169 YLAYNNLVGPLPKEVGNMKNLDSLLLNRNSLTGPIPSTIGYLN----LGGKLDLSHNRLD 224
               +++   + +      + + L            S I  ++    L     L++ ++ 
Sbjct: 121 GEDCSDIADGIVENKEKFAHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIK 180

Query: 225 SPIPPTIGNL--TNLTSLDLSSNQLSGLLPREVG-----NLKYLDSLSLDGNNLIGSIPP 277
                +IG     NL SL++ S  L   +  ++      NL+ L  L +   +       
Sbjct: 181 GTNNLSIGKKPRPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLV-LYVGVEDYGFDGDM 239

Query: 278 TI-------GYLTNLTSLNLGYNQLSSSIPPELMNCSQLQNLV---LSHNTLSG----IV 323
            +           NL  L +   +  + +    +    L  L    +S   L+     ++
Sbjct: 240 NVFRPLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLL 299

Query: 324 PPEIGNLTHLRQLDLSHNFINGTIPSQL 351
              +  + HL+ +++ +N+++  +  +L
Sbjct: 300 LDHVDKIKHLKFINMKYNYLSDEMKKEL 327

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis} Length = 362

 Score = 50.3 bits (119), Expect = 5e-07
 Identities = 23/130 (17%), Positives = 45/130 (34%), Gaps = 18/130 (13%)

Query: 41  ALSKLEELALPYNSLTGTIPAEIGS--LRNLVELDL----SNNILNGSIP-----LEFGN 89
               L+ L +    L  ++  +I    L NL +L L     +   +G +           
Sbjct: 191 PRPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDR 250

Query: 90  LKDLDALRLRGNKLDGLIPSSIGN---LTNLTHLDLSLNQLSGR----LPQEVGNLKNLL 142
             +L  L +   +   ++         L  L  +D+S   L+      L   V  +K+L 
Sbjct: 251 FPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLK 310

Query: 143 SLFLDNNNLT 152
            + +  N L+
Sbjct: 311 FINMKYNYLS 320

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis} Length = 362

 Score = 41.5 bits (96), Expect = 3e-04
 Identities = 28/145 (19%), Positives = 54/145 (37%), Gaps = 19/145 (13%)

Query: 19  PNLESIIIPYTLLSGRIPSEIGA--LSKLEELALPYNSLTGTIPAEIGSLR--------- 67
           PNL+S+ I    L   +  +I    L  LE+L L           ++   R         
Sbjct: 193 PNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFP 252

Query: 68  NLVELDLSNNILNGSIP---LEFGNLKDLDALRLRGNKL--DGL--IPSSIGNLTNLTHL 120
           NL  L + +      +    LE   L  L+ + +    L  +G   +   +  + +L  +
Sbjct: 253 NLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFI 312

Query: 121 DLSLNQLSGRLPQEVGN-LKNLLSL 144
           ++  N LS  + +E+   L   + +
Sbjct: 313 NMKYNYLSDEMKKELQKSLPMKIDV 337

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D Length = 170

 Score = 51.1 bits (123), Expect = 5e-08
 Identities = 38/107 (35%), Positives = 48/107 (44%), Gaps = 7/107 (6%)

Query: 213 GGKLDLSHNRLDSPIPPTIGNLTNLTSLDLSSNQLSGLLPREVGNLKYLDSLSLDGNNLI 272
           G  +D S   L S +P  I   T    L L  NQ++ L P     L  L  L LD N L 
Sbjct: 11  GTTVDCSGKSLAS-VPTGI--PTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQL- 66

Query: 273 GSIPPTI-GYLTNLTSLNLGYNQLSSSIPPELM-NCSQLQNLVLSHN 317
             +P  +   LT LT L+L  NQL  SIP     N   L ++ L +N
Sbjct: 67  TVLPAGVFDKLTQLTQLSLNDNQL-KSIPRGAFDNLKSLTHIWLLNN 112

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D Length = 170

 Score = 44.5 bits (106), Expect = 1e-05
 Identities = 31/85 (36%), Positives = 42/85 (49%), Gaps = 5/85 (5%)

Query: 92  DLDALRLRGNKLDGLIPSSIGNLTNLTHLDLSLNQLSGRLPQEV-GNLKNLLSLFLDNNN 150
               L L  N++  L P     LT LT LDL  NQL+  LP  V   L  L  L L++N 
Sbjct: 31  TTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLT-VLPAGVFDKLTQLTQLSLNDNQ 89

Query: 151 LTGPIPSTLY-HLNQLSNLYLAYNN 174
           L   IP   + +L  L++++L  NN
Sbjct: 90  LKS-IPRGAFDNLKSLTHIWL-LNN 112

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D Length = 170

 Score = 41.1 bits (97), Expect = 2e-04
 Identities = 33/116 (28%), Positives = 45/116 (38%), Gaps = 28/116 (24%)

Query: 35  IPSEIGALSKLEELALPYNSLTGTIPAEIGSLRNLVELDLSNNILNGSIPLEFGNLKDLD 94
           +P+ I   +  + L L  N +T   P     L  L  LDL N                  
Sbjct: 24  VPTGI--PTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDN------------------ 63

Query: 95  ALRLRGNKLDGLIPSSIGNLTNLTHLDLSLNQLSGRLPQEV-GNLKNLLSLFLDNN 149
                 N+L  L       LT LT L L+ NQL   +P+    NLK+L  ++L NN
Sbjct: 64  ------NQLTVLPAGVFDKLTQLTQLSLNDNQLK-SIPRGAFDNLKSLTHIWLLNN 112

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 51.2 bits (123), Expect = 6e-08
 Identities = 27/115 (23%), Positives = 47/115 (40%), Gaps = 10/115 (8%)

Query: 42  LSKLEELALPYNSLTGTIPAEIGSLRNLVELDLSNNILNGSIPLE-FGNLKDLDALRLRG 100
             +  EL L    +   I     +L     +D S+N +     L+ F  L+ L  L +  
Sbjct: 18  AVRDRELDLRGYKIP-VIENLGATLDQFDAIDFSDNEIR---KLDGFPLLRRLKTLLVNN 73

Query: 101 NKLDGLIPSSIGNLTNLTHLDLSLNQLSGRLPQEV---GNLKNLLSLFLDNNNLT 152
           N++  +       L +LT L L+ N L      ++    +LK+L  L +  N +T
Sbjct: 74  NRICRIGEGLDQALPDLTELILTNNSLVE--LGDLDPLASLKSLTYLCILRNPVT 126

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 48.9 bits (117), Expect = 4e-07
 Identities = 21/128 (16%), Positives = 50/128 (39%), Gaps = 8/128 (6%)

Query: 240 LDLSSNQLSGLLPREVGNLKYLDSLSLDGNNLIGSIPPTIGYLTNLTSLNLGYNQLSSSI 299
           + L++  +      +  N      L L G   I  I      L    +++   N++    
Sbjct: 2   VKLTAELIEQAA--QYTNAVRDRELDLRGYK-IPVIENLGATLDQFDAIDFSDNEIRKLD 58

Query: 300 PPELMNCSQLQNLVLSHNTLSGIVPPEIGNLTHLRQLDLSHNFIN--GTIPSQLGYIPNI 357
                   +L+ L++++N +  I       L  L +L L++N +   G +   L  + ++
Sbjct: 59  G--FPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELILTNNSLVELGDL-DPLASLKSL 115

Query: 358 SAVDLSKN 365
           + + + +N
Sbjct: 116 TYLCILRN 123

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 48.5 bits (116), Expect = 5e-07
 Identities = 26/108 (24%), Positives = 39/108 (36%), Gaps = 5/108 (4%)

Query: 61  AEIGSLRNLVELDLSNNILNGSIPLEFGNLKDLDALRLRGNKLDGLIPSSIGNLTNLTHL 120
           A+  +     ELDL    +   I      L   DA+    N++  L       L  L  L
Sbjct: 13  AQYTNAVRDRELDLRGYKIP-VIENLGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTL 69

Query: 121 DLSLNQLSGRLPQEVGNLKNLLSLFLDNNNLTGPIPSTLYHLNQLSNL 168
            ++ N++          L +L  L L NN+L       L  L  L +L
Sbjct: 70  LVNNNRICRIGEGLDQALPDLTELILTNNSLVE--LGDLDPLASLKSL 115

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 45.4 bits (108), Expect = 6e-06
 Identities = 17/100 (17%), Positives = 34/100 (34%), Gaps = 4/100 (4%)

Query: 269 NNLIGSIPPTIGYLTNLTSLNLGYNQLSSSIPPELMNCSQLQNLVLSHNTLSGIVPPEIG 328
             LI               L+L   ++   I        Q   +  S N +  +      
Sbjct: 6   AELIEQAA-QYTNAVRDRELDLRGYKIPV-IENLGATLDQFDAIDFSDNEIRKLDG--FP 61

Query: 329 NLTHLRQLDLSHNFINGTIPSQLGYIPNISAVDLSKNNLS 368
            L  L+ L +++N I          +P+++ + L+ N+L 
Sbjct: 62  LLRRLKTLLVNNNRICRIGEGLDQALPDLTELILTNNSLV 101

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 45.0 bits (107), Expect = 7e-06
 Identities = 32/134 (23%), Positives = 59/134 (44%), Gaps = 14/134 (10%)

Query: 72  LDLSNNILNGSIPLEFGNLKDLDALRLRGNKLDGLIPSSIGNLTNLTHLDLSLNQLSGRL 131
           + L+  ++  +   ++ N      L LRG K+  +I +    L     +D S N++  +L
Sbjct: 2   VKLTAELIEQA--AQYTNAVRDRELDLRGYKIP-VIENLGATLDQFDAIDFSDNEIR-KL 57

Query: 132 PQEVGNLKNLLSLFLDNNNLTGPIPSTLYHLNQLSNLYLAYNNL-----VGPLPKEVGNM 186
                 L+ L +L ++NN +          L  L+ L L  N+L     + PL     ++
Sbjct: 58  DG-FPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELILTNNSLVELGDLDPL----ASL 112

Query: 187 KNLDSLLLNRNSLT 200
           K+L  L + RN +T
Sbjct: 113 KSLTYLCILRNPVT 126

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 41.2 bits (97), Expect = 2e-04
 Identities = 25/111 (22%), Positives = 43/111 (38%), Gaps = 6/111 (5%)

Query: 185 NMKNLDSLLLNRNSLTGPIPSTIGYLNLGGKLDLSHNRLDSPIPPTIGNLTNLTSLDLSS 244
           N      L L    +   I +    L+    +D S N +          L  L +L +++
Sbjct: 17  NAVRDRELDLRGYKIP-VIENLGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNN 73

Query: 245 NQLSGLLPREVGNLKYLDSLSLDGNNL--IGSIPPTIGYLTNLTSLNLGYN 293
           N++  +       L  L  L L  N+L  +G + P +  L +LT L +  N
Sbjct: 74  NRICRIGEGLDQALPDLTELILTNNSLVELGDLDP-LASLKSLTYLCILRN 123

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus} Length = 174

 Score = 50.7 bits (122), Expect = 8e-08
 Identities = 30/89 (33%), Positives = 44/89 (49%), Gaps = 6/89 (6%)

Query: 213 GGKLDLSHNRLDSPIPPTIGNLTNLTSLDLSSNQLSGLLPREVGNLKYLDSLSLDGNNLI 272
              ++  + RL S +P  I   T+   L L++NQ++ L P    +L  L  L  + N L 
Sbjct: 14  QTLVNCQNIRLAS-VPAGI--PTDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKL- 69

Query: 273 GSIPPTI-GYLTNLTSLNLGYNQLSSSIP 300
            +IP  +   LT LT L+L  N L  SIP
Sbjct: 70  TAIPTGVFDKLTQLTQLDLNDNHL-KSIP 97

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus} Length = 174

 Score = 44.2 bits (105), Expect = 1e-05
 Identities = 29/85 (34%), Positives = 44/85 (51%), Gaps = 5/85 (5%)

Query: 92  DLDALRLRGNKLDGLIPSSIGNLTNLTHLDLSLNQLSGRLPQEV-GNLKNLLSLFLDNNN 150
           D   L L  N++  L P    +L NL  L  + N+L+  +P  V   L  L  L L++N+
Sbjct: 34  DKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLT-AIPTGVFDKLTQLTQLDLNDNH 92

Query: 151 LTGPIPSTLY-HLNQLSNLYLAYNN 174
           L   IP   + +L  L+++YL YNN
Sbjct: 93  LKS-IPRGAFDNLKSLTHIYL-YNN 115

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus} Length = 174

 Score = 41.1 bits (97), Expect = 2e-04
 Identities = 31/116 (26%), Positives = 46/116 (39%), Gaps = 28/116 (24%)

Query: 35  IPSEIGALSKLEELALPYNSLTGTIPAEIGSLRNLVELDLSNNILNGSIPLEFGNLKDLD 94
           +P+ I   +  + L L  N +T   P     L NL +L  ++                  
Sbjct: 27  VPAGI--PTDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNS------------------ 66

Query: 95  ALRLRGNKLDGLIPSSIGNLTNLTHLDLSLNQLSGRLPQEV-GNLKNLLSLFLDNN 149
                 NKL  +       LT LT LDL+ N L   +P+    NLK+L  ++L NN
Sbjct: 67  ------NKLTAIPTGVFDKLTQLTQLDLNDNHLK-SIPRGAFDNLKSLTHIYLYNN 115

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} Length = 362

 Score = 52.0 bits (125), Expect = 2e-07
 Identities = 58/306 (18%), Positives = 101/306 (33%), Gaps = 64/306 (20%)

Query: 106 LIPSSIGNLTNLTHLDLSLNQLSGRLPQEVG-----NLKNLLSLFLDNNNLTGP----IP 156
            +         +T LDLSLN L      E+         ++ SL L  N+L       + 
Sbjct: 13  PVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELV 72

Query: 157 STLYHLN-QLSNLYLAYNNLVGPLPKEVGNMKNLDSLLLNRNSLTGPIPSTIGYLNLGGK 215
             L  +   +++L L+ N L         + + + +L     ++T               
Sbjct: 73  QILAAIPANVTSLNLSGNFL-----SYKSSDELVKTLAAIPFTIT--------------V 113

Query: 216 LDLSHNRLDSPIPPTIGNL-----TNLTSLDLSSNQ--------LSGLLPREVGNLKYLD 262
           LDL  N   S               ++TSL+L  N         L  +L     N+  L+
Sbjct: 114 LDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQILAAIPANVNSLN 173

Query: 263 ----SLSLDGNNLIGSIPPTIGYLTNLTSLNLGYNQLSSSIPPEL-----MNCSQLQNLV 313
               +L+      +     +I    ++TSL+L  N L      EL        + + +L 
Sbjct: 174 LRGNNLASKNCAELAKFLASIP--ASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLN 231

Query: 314 LSHNTLSGIVPPEIGNL----THLRQLDLSHNFINGTIPSQLGYI-------PNISAVDL 362
           L  N L G     +  L     HL+ + L ++ +      Q   +         I  VD 
Sbjct: 232 LCLNCLHGPSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDK 291

Query: 363 SKNNLS 368
           +   + 
Sbjct: 292 NGKEIH 297

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} Length = 362

 Score = 50.5 bits (121), Expect = 5e-07
 Identities = 63/336 (18%), Positives = 112/336 (33%), Gaps = 66/336 (19%)

Query: 67  RNLVELDLSNNIL--NGSIPLEFG---NLKDLDALRLRGNKL-----DGLIPSSIGNLTN 116
             +  LDLS N L    ++ L          + +L L GN L     D L+        N
Sbjct: 22  HGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPAN 81

Query: 117 LTHLDLSLNQLSGRLPQEVGNL-----KNLLSLFLDNNNLTG----PIPSTLYHLNQ-LS 166
           +T L+LS N LS +   E+          +  L L  N+ +            +L   ++
Sbjct: 82  VTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASIT 141

Query: 167 NLYLAYNNLVGPLPKEVGNM-----KNLDSLLLNRNSLTGPIPSTIGYLNLGG------- 214
           +L L  N+L      E+  +      N++SL L  N+L      +     L         
Sbjct: 142 SLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNNLA-----SKNCAELAKFLASIPA 196

Query: 215 ---KLDLSHNRLDSPIPPTIG-----NLTNLTSLDLSSNQLSG----LLPREVGNLKYLD 262
               LDLS N L       +         ++ SL+L  N L G     L     +LK+L 
Sbjct: 197 SVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPSLENLKLLKDSLKHLQ 256

Query: 263 SLSLDGNNL-------IGSIPPTIGYLTNLTSLNLGYNQLSSSIPPELMN-----CSQLQ 310
           ++ LD + +         ++      +  +  ++    ++  S    + N       +  
Sbjct: 257 TVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEIHPSHSIPISNLIRELSGKAD 316

Query: 311 NLVLSHNTLSGIV-----PPEIGNLTHLRQLDLSHN 341
              L +  L           ++     LR+   +  
Sbjct: 317 VPSLLNQCLIFAQKHQTNIEDLNIPDELRESIQTCK 352

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 48.9 bits (117), Expect = 2e-07
 Identities = 27/111 (24%), Positives = 44/111 (39%), Gaps = 4/111 (3%)

Query: 65  SLRNLVELDLSNN-ILNGSIPLEFGNLKDLDALRLRGNKLDGLIPSSIGNLTNLTHLDLS 123
           +  ++ EL L N+    G +       ++L+ L      L  +  +++  L  L  L+LS
Sbjct: 15  TPSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELS 72

Query: 124 LNQLSGRLPQEVGNLKNLLSLFLDNNNLTGP-IPSTLYHLNQLSNLYLAYN 173
            N++SG L        NL  L L  N +        L  L  L +L L   
Sbjct: 73  DNRVSGGLEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNC 123

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 46.6 bits (111), Expect = 1e-06
 Identities = 26/111 (23%), Positives = 44/111 (39%), Gaps = 4/111 (3%)

Query: 257 NLKYLDSLSLDGN-NLIGSIPPTIGYLTNLTSLNLGYNQLSSSIPPELMNCSQLQNLVLS 315
               +  L LD + +  G +         L  L+     L+S     L   ++L+ L LS
Sbjct: 15  TPSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELS 72

Query: 316 HNTLSGIVPPEIGNLTHLRQLDLSHNFING-TIPSQLGYIPNISAVDLSKN 365
            N +SG +        +L  L+LS N I   +    L  + N+ ++DL   
Sbjct: 73  DNRVSGGLEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNC 123

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 41.6 bits (98), Expect = 9e-05
 Identities = 19/88 (21%), Positives = 41/88 (46%), Gaps = 3/88 (3%)

Query: 282 LTNLTSLNLGYNQLSSSIPPELM-NCSQLQNLVLSHNTLSGIVPPEIGNLTHLRQLDLSH 340
            +++  L L  ++ +      L     +L+ L   +  L+ I    +  L  L++L+LS 
Sbjct: 16  PSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSD 73

Query: 341 NFINGTIPSQLGYIPNISAVDLSKNNLS 368
           N ++G +       PN++ ++LS N + 
Sbjct: 74  NRVSGGLEVLAEKCPNLTHLNLSGNKIK 101

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 40.8 bits (96), Expect = 2e-04
 Identities = 28/94 (29%), Positives = 44/94 (46%), Gaps = 3/94 (3%)

Query: 33  GRIPSEIGALSKLEELALPYNSLTGTIPAEIGSLRNLVELDLSNNILNGSIPLEFGNLKD 92
           G++        +LE L+     LT +I A +  L  L +L+LS+N ++G + +      +
Sbjct: 32  GKLEGLTDEFEELEFLSTINVGLT-SI-ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPN 89

Query: 93  LDALRLRGNKLDGL-IPSSIGNLTNLTHLDLSLN 125
           L  L L GNK+  L     +  L NL  LDL   
Sbjct: 90  LTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNC 123

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 39.7 bits (93), Expect = 4e-04
 Identities = 25/116 (21%), Positives = 44/116 (37%), Gaps = 8/116 (6%)

Query: 89  NLKDLDALRLRGNKLD-GLIPSSIGNLTNLTHLDLSLNQLS--GRLPQEVGNLKNLLSLF 145
              D+  L L  ++ + G +         L  L      L+    LP     L  L  L 
Sbjct: 15  TPSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSIANLP----KLNKLKKLE 70

Query: 146 LDNNNLTGPIPSTLYHLNQLSNLYLAYNNLVGPL-PKEVGNMKNLDSLLLNRNSLT 200
           L +N ++G +         L++L L+ N +      + +  ++NL SL L    +T
Sbjct: 71  LSDNRVSGGLEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVT 126

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 39.7 bits (93), Expect = 4e-04
 Identities = 30/103 (29%), Positives = 42/103 (40%), Gaps = 5/103 (4%)

Query: 193 LLNRNSLTGPIPSTIGYLNLGGKLDLSHNRLDSPIPPTIGNLTNLTSLDLSSNQLSGLLP 252
           L N  S  G +            L   +  L S I   +  L  L  L+LS N++SG L 
Sbjct: 24  LDNSRSNEGKLEGLTDEFEELEFLSTINVGLTS-IAN-LPKLNKLKKLELSDNRVSGGLE 81

Query: 253 REVGNLKYLDSLSLDGNNL--IGSIPPTIGYLTNLTSLNLGYN 293
                   L  L+L GN +  + +I P +  L NL SL+L   
Sbjct: 82  VLAEKCPNLTHLNLSGNKIKDLSTIEP-LKKLENLKSLDLFNC 123

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 47.4 bits (113), Expect = 1e-06
 Identities = 32/111 (28%), Positives = 43/111 (38%), Gaps = 4/111 (3%)

Query: 65  SLRNLVELDLSNNILN-GSIPLEFGNLKDLDALRLRGNKLDGLIPSSIGNLTNLTHLDLS 123
           +   + EL L N   N G I        +L+ L L    L  +  S++  L  L  L+LS
Sbjct: 22  TPAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV--SNLPKLPKLKKLELS 79

Query: 124 LNQLSGRLPQEVGNLKNLLSLFLDNNNLTGP-IPSTLYHLNQLSNLYLAYN 173
            N++ G L      L NL  L L  N L        L  L  L +L L   
Sbjct: 80  ENRIFGGLDMLAEKLPNLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNC 130

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 47.4 bits (113), Expect = 1e-06
 Identities = 24/89 (26%), Positives = 35/89 (39%), Gaps = 3/89 (3%)

Query: 257 NLKYLDSLSLDGN-NLIGSIPPTIGYLTNLTSLNLGYNQLSSSIPPELMNCSQLQNLVLS 315
               +  L LD   +  G I        NL  L+L    L S +   L    +L+ L LS
Sbjct: 22  TPAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLIS-VSN-LPKLPKLKKLELS 79

Query: 316 HNTLSGIVPPEIGNLTHLRQLDLSHNFIN 344
            N + G +      L +L  L+LS N + 
Sbjct: 80  ENRIFGGLDMLAEKLPNLTHLNLSGNKLK 108

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 42.0 bits (99), Expect = 7e-05
 Identities = 31/107 (28%), Positives = 46/107 (42%), Gaps = 5/107 (4%)

Query: 193 LLNRNSLTGPIPSTIGYLNLGGKLDLSHNRLDSPIPPTIGNLTNLTSLDLSSNQLSGLLP 252
           L N  S  G I            L L +  L S +   +  L  L  L+LS N++ G L 
Sbjct: 31  LDNCKSNDGKIEGLTAEFVNLEFLSLINVGLIS-VSN-LPKLPKLKKLELSENRIFGGLD 88

Query: 253 REVGNLKYLDSLSLDGNNL--IGSIPPTIGYLTNLTSLNLGYNQLSS 297
                L  L  L+L GN L  I ++ P +  L  L SL+L   ++++
Sbjct: 89  MLAEKLPNLTHLNLSGNKLKDISTLEP-LKKLECLKSLDLFNCEVTN 134

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 40.5 bits (95), Expect = 2e-04
 Identities = 27/97 (27%), Positives = 42/97 (43%), Gaps = 3/97 (3%)

Query: 33  GRIPSEIGALSKLEELALPYNSLTGTIPAEIGSLRNLVELDLSNNILNGSIPLEFGNLKD 92
           G+I         LE L+L    L     + +  L  L +L+LS N + G + +    L +
Sbjct: 39  GKIEGLTAEFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDMLAEKLPN 96

Query: 93  LDALRLRGNKLDGL-IPSSIGNLTNLTHLDLSLNQLS 128
           L  L L GNKL  +     +  L  L  LDL   +++
Sbjct: 97  LTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVT 133

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 40.5 bits (95), Expect = 3e-04
 Identities = 21/89 (23%), Positives = 37/89 (41%), Gaps = 3/89 (3%)

Query: 281 YLTNLTSLNLGYNQLS-SSIPPELMNCSQLQNLVLSHNTLSGIVPPEIGNLTHLRQLDLS 339
               +  L L   + +   I         L+ L L +  L  +    +  L  L++L+LS
Sbjct: 22  TPAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV--SNLPKLPKLKKLELS 79

Query: 340 HNFINGTIPSQLGYIPNISAVDLSKNNLS 368
            N I G +      +PN++ ++LS N L 
Sbjct: 80  ENRIFGGLDMLAEKLPNLTHLNLSGNKLK 108

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A Length = 336

 Score = 45.3 bits (107), Expect = 2e-05
 Identities = 49/239 (20%), Positives = 86/239 (35%), Gaps = 14/239 (5%)

Query: 9   ELSQLNFTCFPNLESIIIPYTLLS-GRIPSEIGALSKLEELALPYNSLTGTIPAEIGSLR 67
           +           ++ + +  +++    +   +   SKL+ L+L    L+  I   +    
Sbjct: 83  DQPLAEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNS 142

Query: 68  NLVELDLSN--NILNGSIPLEFGNLKDLDALRLRGNKL---DGLIPSSIGNLTNLTHLDL 122
           NLV L+LS        ++     +   LD L L          +  +       +T L+L
Sbjct: 143 NLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNL 202

Query: 123 S--LNQLSGR-LPQEVGNLKNLLSLFL-DNNNLTGPIPSTLYHLNQLSNLYLAYNNLVGP 178
           S     L    L   V    NL+ L L D+  L        + LN L +L L+    + P
Sbjct: 203 SGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIP 262

Query: 179 L-PKEVGNMKNLDSLLLNRNSLTGPIPSTIGYLNLGGKLDLSHNRLDSPIPPTIGNLTN 236
               E+G +  L +L +      G +      L     L ++ +   +   PTIGN  N
Sbjct: 263 ETLLELGEIPTLKTLQVFGIVPDGTLQLLKEALP---HLQINCSHFTTIARPTIGNKKN 318

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A Length = 336

 Score = 44.1 bits (104), Expect = 4e-05
 Identities = 45/184 (24%), Positives = 71/184 (38%), Gaps = 10/184 (5%)

Query: 215 KLDLSHNRLDSPIPPTIGNLTNLTSLDLSS-NQLS-GLLPREVGNLKYLDSLSLDGNNLI 272
            L L   RL  PI  T+   +NL  L+LS  +  S   L   + +   LD L+L      
Sbjct: 122 NLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDF 181

Query: 273 GSIPPTI---GYLTNLTSLNL-GYNQL--SSSIPPELMNCSQLQNLVLSHNT-LSGIVPP 325
                 +        +T LNL GY +    S +   +  C  L +L LS +  L      
Sbjct: 182 TEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQ 241

Query: 326 EIGNLTHLRQLDLSH-NFINGTIPSQLGYIPNISAVDLSKNNLSGVVPASVRIIPKLIVS 384
           E   L +L+ L LS    I      +LG IP +  + +      G +      +P L ++
Sbjct: 242 EFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGIVPDGTLQLLKEALPHLQIN 301

Query: 385 ENNL 388
            ++ 
Sbjct: 302 CSHF 305

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A Length = 336

 Score = 42.9 bits (101), Expect = 1e-04
 Identities = 50/270 (18%), Positives = 87/270 (32%), Gaps = 25/270 (9%)

Query: 67  RNLVELDLSNNILNGSIPLEFGNLKDLDALRLRGNKLDGLIPSSIGNLTNLTHLDLSLNQ 126
           + ++      + ++  +   F   +               +   +   + L +L L   +
Sbjct: 70  QGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLR 129

Query: 127 LSGRLPQEVGNLKNLLSLFLDN-NNLTGPIPSTLY-HLNQLSNLYLAYNNLVGPLPKEVG 184
           LS  +   +    NL+ L L   +  +     TL    ++L  L L++            
Sbjct: 130 LSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFT------- 182

Query: 185 NMKNLDSLLLNRNSLTGPIPSTIGYLNLGGKLDLSHNRLDSPIPPTIGNLTNLTSLDLSS 244
                +  +         +  TI  LNL G      N   S +   +    NL  LDLS 
Sbjct: 183 -----EKHVQ---VAVAHVSETITQLNLSG---YRKNLQKSDLSTLVRRCPNLVHLDLSD 231

Query: 245 -NQLSGLLPREVGNLKYLDSLSLDGNNLIGSI-PPTIGYLTNLTSLNLGYNQLSSSIPPE 302
              L     +E   L YL  LSL     I       +G +  L +L +       ++   
Sbjct: 232 SVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGIVPDGTLQLL 291

Query: 303 LMNCSQLQNLVLSHNTLSGIVPPEIGNLTH 332
                 LQ +  SH   + I  P IGN  +
Sbjct: 292 KEALPHLQ-INCSH--FTTIARPTIGNKKN 318

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens} Length = 372

 Score = 41.2 bits (97), Expect = 4e-04
 Identities = 29/151 (19%), Positives = 52/151 (34%), Gaps = 26/151 (17%)

Query: 215 KLDLSHNRLDSPIPPTIGN-LTNLTSLDLSSNQL---------SGLLPREVGNLKYLDSL 264
           +++L+  +LD     T+         L L  N L           LL     +   + +L
Sbjct: 105 EVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLLL----HDQCQITTL 160

Query: 265 SLDGNNL----IGSIPPTIGYLTNLTSLNLGYNQLS----SSIPPELMNCSQLQNLVLSH 316
            L  N L    +  +   +   T++T L+L +  L       +  +L    QLQ L +++
Sbjct: 161 RLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAY 220

Query: 317 NTLSGIVPPEIGNL----THLRQLDLSHNFI 343
           N         +         L  L L  N +
Sbjct: 221 NGAGDTAALALARAAREHPSLELLHLYFNEL 251

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	408
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	100.0
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	100.0
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	100.0
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	100.0
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	100.0
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	100.0
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	100.0
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	100.0
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	100.0
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	100.0
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	100.0
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	100.0
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	100.0
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	100.0
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	100.0
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	100.0
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	100.0
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	100.0
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	100.0
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	100.0
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	100.0
1o6v_A	466	Internalin A; bacterial infection, extracellular r	100.0
1o6v_A	466	Internalin A; bacterial infection, extracellular r	100.0
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	100.0
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	100.0
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	100.0
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	100.0
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	100.0
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	100.0
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	100.0
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	100.0
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	100.0
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	100.0
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	100.0
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	100.0
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	100.0
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	100.0
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	100.0
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	99.98
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	99.97
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	99.97
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	99.97
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	99.97
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	99.97
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	99.97
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	99.96
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	99.96
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	99.96
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	99.95
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	99.94
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	99.94
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	99.94
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	99.94
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	99.94
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	99.94
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	99.94
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	99.94
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	99.94
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	99.93
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	99.93
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	99.93
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	99.92
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	99.92
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	99.92
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	99.92
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	99.91
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	99.91
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	99.91
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	99.91
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	99.9
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	99.9
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	99.89
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	99.89
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	99.89
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	99.89
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	99.89
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	99.88
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	99.88
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	99.87
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	99.87
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	99.87
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	99.86
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	99.86
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	99.84
3m19_A	251	Variable lymphocyte receptor A diversity region; a	99.84
4fs7_A	394	Uncharacterized protein; leucine-rich repeats, pro	99.84
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	99.84
3m19_A	251	Variable lymphocyte receptor A diversity region; a	99.84
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	99.84
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	99.84
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	99.83
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	99.83
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	99.83
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	99.83
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	99.83
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	99.83
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	99.81
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	99.77
4fs7_A	394	Uncharacterized protein; leucine-rich repeats, pro	99.76
4gt6_A	394	Cell surface protein; leucine rich repeats, putati	99.75
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	99.75
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	99.75
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	99.74
4fdw_A	401	Leucine rich hypothetical protein; putative cell s	99.74
4fdw_A	401	Leucine rich hypothetical protein; putative cell s	99.74
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	99.73
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	99.73
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	99.73
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	99.73
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	99.72
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	99.72
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	99.72
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	99.72
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	99.72
3e6j_A	229	Variable lymphocyte receptor diversity region; var	99.7
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	99.7
3e6j_A	229	Variable lymphocyte receptor diversity region; var	99.7
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	99.7
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	99.68
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	99.68
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	99.68
4gt6_A	394	Cell surface protein; leucine rich repeats, putati	99.67
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	99.65
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	99.63
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	99.62
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.59
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.57
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	99.56
4h09_A	379	Hypothetical leucine rich repeat protein; two LRR_	99.56
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.55
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.55
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	99.55
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	99.54
4h09_A	379	Hypothetical leucine rich repeat protein; two LRR_	99.54
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	99.52
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	99.52
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	99.52
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	99.5
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	99.47
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	99.46
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	99.46
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	99.45
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	99.32
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	99.31
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	99.29
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	99.28
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	99.26
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	99.24
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	99.2
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	99.12
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	99.03
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	98.95
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	98.85
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	98.73
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	98.58
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	98.43
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	98.35
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	98.34
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	97.95
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	97.93
1pgv_A	197	TMD-1, tropomodulin TMD-1; structural genomics, PS	96.81
1pgv_A	197	TMD-1, tropomodulin TMD-1; structural genomics, PS	96.71
3rfe_A	130	Platelet glycoprotein IB beta chain; platelet surf	95.87
3rfe_A	130	Platelet glycoprotein IB beta chain; platelet surf	95.8
2lz0_A	100	Uncharacterized protein; hypothetical leucine rich	93.4
2lz0_A	100	Uncharacterized protein; hypothetical leucine rich	90.66

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=100.00  E-value=2.3e-45  Score=367.31  Aligned_cols=303  Identities=35%  Similarity=0.506  Sum_probs=156.1

Q ss_pred             cCCCCCCcEEEcCCCccccccchhhccCCCCcEEeCCCCcCCCCCcccccCCCCCcEEeCCCceecccCcccccC-CCCC
Q 037302           15 FTCFPNLESIIIPYTLLSGRIPSEIGALSKLEELALPYNSLTGTIPAEIGSLRNLVELDLSNNILNGSIPLEFGN-LKDL   93 (408)
Q Consensus        15 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~-l~~L   93 (408)
                      |.++++|++|++++|.+.+..+..+..+++|++|++++|.+.+..+..  .+++|++|++++|.+.+..|..+.. +++|
T Consensus       219 l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~--~l~~L~~L~L~~n~l~~~ip~~~~~~~~~L  296 (768)
T 3rgz_A          219 LGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPPL--PLKSLQYLSLAENKFTGEIPDFLSGACDTL  296 (768)
T ss_dssp             CTTCCSCCEEECCSSCCCSCHHHHTTTCSSCCEEECCSSCCEESCCCC--CCTTCCEEECCSSEEEESCCCCSCTTCTTC
T ss_pred             cccCCCCCEEECcCCcCCCcccHHHhcCCCCCEEECCCCcccCccCcc--ccCCCCEEECcCCccCCccCHHHHhhcCcC
Confidence            888889999999888888888888888888888888888765433322  4555555555555555444444433 2555


Q ss_pred             ceeecCCccccccCCCcCCCCCCCCEEEcCCCeecccCccc-ccCCCCCceEeccCCcccCcCchhhcc-----------
Q 037302           94 DALRLRGNKLDGLIPSSIGNLTNLTHLDLSLNQLSGRLPQE-VGNLKNLLSLFLDNNNLTGPIPSTLYH-----------  161 (408)
Q Consensus        94 ~~L~l~~~~i~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~-~~~l~~L~~L~l~~~~~~~~~~~~~~~-----------  161 (408)
                      ++|++++|.+....+..+..+++|++|++++|.+.+..+.. +..+++|++|++++|.+.+..+..+..           
T Consensus       297 ~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~ip~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~~L~~L~Ls  376 (768)
T 3rgz_A          297 TGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLS  376 (768)
T ss_dssp             SEEECCSSEEEECCCGGGGGCTTCCEEECCSSEEEEECCHHHHTTCTTCCEEECCSSEEEECCCTTHHHHTTTCSEEECC
T ss_pred             CEEECcCCcCCCccchHHhcCCCccEEECCCCcccCcCCHHHHhcCCCCCEEeCcCCccCccccHHHHhhhcCCcEEEcc
Confidence            55555555554444444555555555555555443222222 444444444444444433222222222           


Q ss_pred             ----------------CCCCCEEEcCCCcCCCCCCccccCCCCCCEEEecCcccccccCcccccccccCeEEccCCcCCC
Q 037302          162 ----------------LNQLSNLYLAYNNLVGPLPKEVGNMKNLDSLLLNRNSLTGPIPSTIGYLNLGGKLDLSHNRLDS  225 (408)
Q Consensus       162 ----------------~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~  225 (408)
                                      +++|++|++++|.+....+..+..+++|+.|++++|.+.+..+..+..++.|+.+++++|.+.+
T Consensus       377 ~N~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~  456 (768)
T 3rgz_A          377 SNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEG  456 (768)
T ss_dssp             SSEEEEECCTTTTCSTTCCCCEEECCSSEEEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCCS
T ss_pred             CCCcCCCcChhhhhcccCCccEEECCCCccccccCHHHhcCCCCCEEECcCCcccCcccHHHhcCCCCCEEECCCCcccC
Confidence                            2233333333333332333344444555555555554444444444444555555555554444


Q ss_pred             CCCcccCCCCCccEEEccCCcccccCCccccCCCCCCEEeCCCCcccccCCccccCCCCCcEEeCCCCccccCCCcCCcC
Q 037302          226 PIPPTIGNLTNLTSLDLSSNQLSGLLPREVGNLKYLDSLSLDGNNLIGSIPPTIGYLTNLTSLNLGYNQLSSSIPPELMN  305 (408)
Q Consensus       226 ~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~  305 (408)
                      ..+..+..+++|++|++++|.+.+..+..+..+++|++|++++|.+....+.++..+++|++|++++|.+.+..+..+..
T Consensus       457 ~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~  536 (768)
T 3rgz_A          457 EIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGD  536 (768)
T ss_dssp             CCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECCGGGGG
T ss_pred             cCCHHHcCCCCceEEEecCCcccCcCCHHHhcCCCCCEEEccCCccCCcCChHHhcCCCCCEEECCCCcccCcCCHHHcC
Confidence            44444444455555555555444444444444555555555555544444444444555555555555544444444444


Q ss_pred             CCCCcEEEcCCCcc
Q 037302          306 CSQLQNLVLSHNTL  319 (408)
Q Consensus       306 ~~~L~~L~l~~~~~  319 (408)
                      +++|+.|++++|++
T Consensus       537 l~~L~~L~Ls~N~l  550 (768)
T 3rgz_A          537 CRSLIWLDLNTNLF  550 (768)
T ss_dssp             CTTCCEEECCSSEE
T ss_pred             CCCCCEEECCCCcc
Confidence            44444444444443

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=100.00  E-value=7.1e-45  Score=363.83  Aligned_cols=333  Identities=37%  Similarity=0.529  Sum_probs=273.8

Q ss_pred             cccCCCCCCcEEEcCCCccccccchhhccCCCCcEEeCCCCcCCCCCcccccCCCCCcEEeCCCceecccCcccccCCCC
Q 037302           13 LNFTCFPNLESIIIPYTLLSGRIPSEIGALSKLEELALPYNSLTGTIPAEIGSLRNLVELDLSNNILNGSIPLEFGNLKD   92 (408)
Q Consensus        13 ~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~   92 (408)
                      ..+.++++|++|++++|.+.+..+. +..+++|++|++++|.+++..+..+..+++|++|++++|.+.+..|..  .+++
T Consensus       194 ~~~~~l~~L~~L~Ls~n~l~~~~~~-l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~--~l~~  270 (768)
T 3rgz_A          194 VDVSRCVNLEFLDVSSNNFSTGIPF-LGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPPL--PLKS  270 (768)
T ss_dssp             CBCTTCTTCCEEECCSSCCCSCCCB-CTTCCSCCEEECCSSCCCSCHHHHTTTCSSCCEEECCSSCCEESCCCC--CCTT
T ss_pred             CCcccCCcCCEEECcCCcCCCCCcc-cccCCCCCEEECcCCcCCCcccHHHhcCCCCCEEECCCCcccCccCcc--ccCC
Confidence            3458999999999999999987777 999999999999999998888899999999999999999988666654  8899


Q ss_pred             CceeecCCccccccCCCcCCCC-CCCCEEEcCCCeecccCcccccCCCCCceEeccCCcccCcCchh-hccCCCCCEEEc
Q 037302           93 LDALRLRGNKLDGLIPSSIGNL-TNLTHLDLSLNQLSGRLPQEVGNLKNLLSLFLDNNNLTGPIPST-LYHLNQLSNLYL  170 (408)
Q Consensus        93 L~~L~l~~~~i~~~~~~~l~~l-~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~-~~~~~~L~~L~l  170 (408)
                      |++|++++|.+....|..+... ++|++|++++|.+.+..+..+..+++|++|++++|.+.+..+.. +..+++|++|++
T Consensus       271 L~~L~L~~n~l~~~ip~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~ip~~~l~~l~~L~~L~L  350 (768)
T 3rgz_A          271 LQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDL  350 (768)
T ss_dssp             CCEEECCSSEEEESCCCCSCTTCTTCSEEECCSSEEEECCCGGGGGCTTCCEEECCSSEEEEECCHHHHTTCTTCCEEEC
T ss_pred             CCEEECcCCccCCccCHHHHhhcCcCCEEECcCCcCCCccchHHhcCCCccEEECCCCcccCcCCHHHHhcCCCCCEEeC
Confidence            9999999999987777777664 99999999999998888899999999999999999987555544 889999999999


Q ss_pred             CCCcCCCCCCccccC---------------------------CCCCCEEEecCcccccccCcccccccccCeEEccCCcC
Q 037302          171 AYNNLVGPLPKEVGN---------------------------MKNLDSLLLNRNSLTGPIPSTIGYLNLGGKLDLSHNRL  223 (408)
Q Consensus       171 ~~~~~~~~~~~~~~~---------------------------~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~  223 (408)
                      ++|.+....+..+..                           +++|+.|++++|.+.+..+..+..++.|+.+++++|.+
T Consensus       351 s~n~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l  430 (768)
T 3rgz_A          351 SFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYL  430 (768)
T ss_dssp             CSSEEEECCCTTHHHHTTTCSEEECCSSEEEEECCTTTTCSTTCCCCEEECCSSEEEEECCGGGGGCTTCCEEECCSSEE
T ss_pred             cCCccCccccHHHHhhhcCCcEEEccCCCcCCCcChhhhhcccCCccEEECCCCccccccCHHHhcCCCCCEEECcCCcc
Confidence            999875444443433                           34566666666666555666777778888888888877


Q ss_pred             CCCCCcccCCCCCccEEEccCCcccccCCccccCCCCCCEEeCCCCcccccCCccccCCCCCcEEeCCCCccccCCCcCC
Q 037302          224 DSPIPPTIGNLTNLTSLDLSSNQLSGLLPREVGNLKYLDSLSLDGNNLIGSIPPTIGYLTNLTSLNLGYNQLSSSIPPEL  303 (408)
Q Consensus       224 ~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~  303 (408)
                      .+..+..+..+++|+.|++++|.+.+..+..+..+++|++|++++|.+....+..+..+++|++|++++|.+++..+..+
T Consensus       431 ~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~  510 (768)
T 3rgz_A          431 SGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWI  510 (768)
T ss_dssp             ESCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGG
T ss_pred             cCcccHHHhcCCCCCEEECCCCcccCcCCHHHcCCCCceEEEecCCcccCcCCHHHhcCCCCCEEEccCCccCCcCChHH
Confidence            77777777888888888888888877777778888888888888888877777778888888888888888887888888


Q ss_pred             cCCCCCcEEEcCCCccCCcCCcccccCCCccEEEcCCccccccCC
Q 037302          304 MNCSQLQNLVLSHNTLSGIVPPEIGNLTHLRQLDLSHNFINGTIP  348 (408)
Q Consensus       304 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~  348 (408)
                      ..+++|++|++++|++.+..+..+..+++|+.|++++|++++.+|
T Consensus       511 ~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip  555 (768)
T 3rgz_A          511 GRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIP  555 (768)
T ss_dssp             GGCTTCCEEECCSSCCEEECCGGGGGCTTCCEEECCSSEEESBCC
T ss_pred             hcCCCCCEEECCCCcccCcCCHHHcCCCCCCEEECCCCccCCcCC
Confidence            888888888888888877777777777777777777776654443

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=100.00  E-value=2.5e-43  Score=344.92  Aligned_cols=398  Identities=20%  Similarity=0.196  Sum_probs=268.6

Q ss_pred             CCCcccccccccCCCCCCcEEEcCCCccccccchhhccCCCCcEEeCCCCcCCCCCcccccCCCCCcEEeCCCceecccC
Q 037302            4 NGNAAELSQLNFTCFPNLESIIIPYTLLSGRIPSEIGALSKLEELALPYNSLTGTIPAEIGSLRNLVELDLSNNILNGSI   83 (408)
Q Consensus         4 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~   83 (408)
                      +|.++.+...+|.++++|++|++++|.+.+..+..|..+++|++|++++|.+....+..|.++++|++|++++|.+....
T Consensus        42 ~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~l~  121 (606)
T 3t6q_A           42 FNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIFMAETALSGPKALKHLFFIQTGISSID  121 (606)
T ss_dssp             TCCCSEECTTTSTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCSEECTTTTSSCTTCCEEECTTSCCSCGG
T ss_pred             CCccCcCChhHhccCccceEEECCCCccceeChhhccCccccCeeeCCCCcccccChhhhcccccccEeeccccCcccCC
Confidence            46788888889999999999999999998888888999999999999999988777888999999999999999988666


Q ss_pred             cccccCCCCCceeecCCccccccCCCcCCCCCCCCEEEcCCCeecccCcccccCCCCCc--eEeccCCcccC--------
Q 037302           84 PLEFGNLKDLDALRLRGNKLDGLIPSSIGNLTNLTHLDLSLNQLSGRLPQEVGNLKNLL--SLFLDNNNLTG--------  153 (408)
Q Consensus        84 ~~~~~~l~~L~~L~l~~~~i~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~--~L~l~~~~~~~--------  153 (408)
                      +..+.++++|++|++++|.+..+....+..+++|++|++++|.+....+..+..+++|+  .+++++|.+..        
T Consensus       122 ~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~l~L~l~~n~l~~~~~~~~~~  201 (606)
T 3t6q_A          122 FIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGNDIAGIEPGAFDS  201 (606)
T ss_dssp             GSCCTTCTTCCEEECCSSCCCCCCCCTTCCCTTCCEEECCSSCCCEECHHHHHTTTTCCSEEEECTTCCCCEECTTTTTT
T ss_pred             cchhccCCcccEEECCCCcccccCcccccCCcccCEEEcccCcccccChhhhhhhcccceeEEecCCCccCccChhHhhh
Confidence            77788999999999999988766555556688999999998887766566666666666  56665554332        


Q ss_pred             -------------------------------------------------------------------cCchhhccCCCCC
Q 037302          154 -------------------------------------------------------------------PIPSTLYHLNQLS  166 (408)
Q Consensus       154 -------------------------------------------------------------------~~~~~~~~~~~L~  166 (408)
                                                                                         ..+..+..+++|+
T Consensus       202 ~~L~~L~l~~~~~~~~~~~~l~~~~l~~l~~~~~~~~~~~~i~~~~~~~l~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~  281 (606)
T 3t6q_A          202 AVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFFNISSNTFHCFSGLQ  281 (606)
T ss_dssp             CEEEEEECTTCSCHHHHHHHTTTCEEEEEECCCCTTSCCCCCCGGGGGGGGGSEEEEEECTTCCCSSCCTTTTTTCTTCS
T ss_pred             ccccccccCCchhHHHHhhhccccchhheechhhccccccccChhHhchhhcCceeEEEeecCccCccCHHHhccccCCC
Confidence                                                                               2223355567777


Q ss_pred             EEEcCCCcCCCCCCccccCCCCCCEEEecCcccccccCcccccccccCeEEccCCcCCCCC-CcccCCCCCccEEEccCC
Q 037302          167 NLYLAYNNLVGPLPKEVGNMKNLDSLLLNRNSLTGPIPSTIGYLNLGGKLDLSHNRLDSPI-PPTIGNLTNLTSLDLSSN  245 (408)
Q Consensus       167 ~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~-~~~l~~~~~L~~L~l~~~  245 (408)
                      +|++++|.+. ..+..+..+++|++|++++|.+.+..+..+..++.|++++++++.+.... ...+..+++|++|++++|
T Consensus       282 ~L~l~~n~l~-~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n  360 (606)
T 3t6q_A          282 ELDLTATHLS-ELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHD  360 (606)
T ss_dssp             EEECTTSCCS-CCCSSCCSCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEECCSCSSCCBCCSSTTTTCTTCCEEECCSS
T ss_pred             EEeccCCccC-CCChhhcccccCCEEECccCCcCcCchhhhhccCcCCEEECCCCCcccccchhhhhccCcCCEEECCCC
Confidence            7777777766 44556677777777877777776555566667777777777776655322 334566667777777766


Q ss_pred             cccccC--CccccCCCCCCEEeCCCCcccccCCccccCCCCCcEEeCCCCccccCCCc-CCcCCCCCcEEEcCCCccCCc
Q 037302          246 QLSGLL--PREVGNLKYLDSLSLDGNNLIGSIPPTIGYLTNLTSLNLGYNQLSSSIPP-ELMNCSQLQNLVLSHNTLSGI  322 (408)
Q Consensus       246 ~~~~~~--~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~-~~~~~~~L~~L~l~~~~~~~~  322 (408)
                      .+....  +..+..+++|++|++++|.+....+..+..+++|++|++++|.+....+. .+..+++|++|++++|.+.+.
T Consensus       361 ~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~  440 (606)
T 3t6q_A          361 DIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDIS  440 (606)
T ss_dssp             CCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCCEECCTTCCTTTTCTTCCEEECTTCCCBTT
T ss_pred             ccccccCcchhcccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCCcCCCcccchhhhCcccCCEEECCCCccCCc
Confidence            665433  44455666666666666665555555555666666666666665543332 255556666666666655555


Q ss_pred             CCcccccCCCccEEEcCCcccccc---CCcCCCCCCCccEEeCCCCccCCcCCcccc---CCCeEEccCCccCCCCCCCc
Q 037302          323 VPPEIGNLTHLRQLDLSHNFINGT---IPSQLGYIPNISAVDLSKNNLSGVVPASVR---IIPKLIVSENNLELENSTSS  396 (408)
Q Consensus       323 ~~~~~~~~~~L~~L~l~~~~~~~~---~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~---~l~~l~l~~n~~~~~~~~~~  396 (408)
                      .+..+..+++|++|++++|++++.   .+..+..+++|+.|++++|++.+..|..+.   ++++|++++|++++.+|+.+
T Consensus       441 ~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l  520 (606)
T 3t6q_A          441 SEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEAL  520 (606)
T ss_dssp             CTTTTTTCTTCCEEECTTCBCGGGEECSSCGGGGCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCGGGGGGG
T ss_pred             CHHHHhCCCCCCEEECCCCCCCccccccchhhccCCCccEEECCCCccCccChhhhccccCCCEEECCCCccCcCChhHh
Confidence            555555555566666666555531   123345555555555555555555554443   23355555555555555555


Q ss_pred             CCCCCC
Q 037302          397 ENAPPP  402 (408)
Q Consensus       397 ~~~~~~  402 (408)
                      .+++.|
T Consensus       521 ~~l~~L  526 (606)
T 3t6q_A          521 SHLKGI  526 (606)
T ss_dssp             TTCCSC
T ss_pred             Cccccc
Confidence            555544

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=100.00  E-value=3e-43  Score=344.35  Aligned_cols=401  Identities=19%  Similarity=0.166  Sum_probs=331.0

Q ss_pred             CCCcccccccccCCCCCCcEEEcCCCccccccchhhccCCCCcEEeCCCCcCCCCCcccccCCCCCcEEeCCCceecccC
Q 037302            4 NGNAAELSQLNFTCFPNLESIIIPYTLLSGRIPSEIGALSKLEELALPYNSLTGTIPAEIGSLRNLVELDLSNNILNGSI   83 (408)
Q Consensus         4 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~   83 (408)
                      +|.+..+...+|.++++|++|++++|.+.+..+..+..+++|++|++++|.++...+..+.++++|++|++++|.+....
T Consensus        66 ~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~l~~~~~~~l~~L~~L~L~~n~l~~~~  145 (606)
T 3t6q_A           66 RCQIYWIHEDTFQSQHRLDTLVLTANPLIFMAETALSGPKALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSNHISSIK  145 (606)
T ss_dssp             TCCCCEECTTTTTTCTTCCEEECTTCCCSEECTTTTSSCTTCCEEECTTSCCSCGGGSCCTTCTTCCEEECCSSCCCCCC
T ss_pred             CCccceeChhhccCccccCeeeCCCCcccccChhhhcccccccEeeccccCcccCCcchhccCCcccEEECCCCcccccC
Confidence            45688888889999999999999999988777888999999999999999888666777888889999999988887543


Q ss_pred             cccccCCCCCceeecCCccccccCCCcCCCCCCCC--EEEcCCCe-----------------------------------
Q 037302           84 PLEFGNLKDLDALRLRGNKLDGLIPSSIGNLTNLT--HLDLSLNQ-----------------------------------  126 (408)
Q Consensus        84 ~~~~~~l~~L~~L~l~~~~i~~~~~~~l~~l~~L~--~L~l~~~~-----------------------------------  126 (408)
                      ...+..+++|++|++++|.+....+..+..+++|+  .+++++|.                                   
T Consensus       146 ~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~l~L~l~~n~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~  225 (606)
T 3t6q_A          146 LPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGNDIAGIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNS  225 (606)
T ss_dssp             CCTTCCCTTCCEEECCSSCCCEECHHHHHTTTTCCSEEEECTTCCCCEECTTTTTTCEEEEEECTTCSCHHHHHHHTTTC
T ss_pred             cccccCCcccCEEEcccCcccccChhhhhhhcccceeEEecCCCccCccChhHhhhccccccccCCchhHHHHhhhcccc
Confidence            33344478888888888877666555555566555  55555443                                   


Q ss_pred             ----------------------------------------ecccCcccccCCCCCceEeccCCcccCcCchhhccCCCCC
Q 037302          127 ----------------------------------------LSGRLPQEVGNLKNLLSLFLDNNNLTGPIPSTLYHLNQLS  166 (408)
Q Consensus       127 ----------------------------------------~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~  166 (408)
                                                              +....+..+..+++|++|+++++.++ ..+..+..+++|+
T Consensus       226 ~l~~l~~~~~~~~~~~~i~~~~~~~l~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~lp~~l~~l~~L~  304 (606)
T 3t6q_A          226 TIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFFNISSNTFHCFSGLQELDLTATHLS-ELPSGLVGLSTLK  304 (606)
T ss_dssp             EEEEEECCCCTTSCCCCCCGGGGGGGGGSEEEEEECTTCCCSSCCTTTTTTCTTCSEEECTTSCCS-CCCSSCCSCTTCC
T ss_pred             chhheechhhccccccccChhHhchhhcCceeEEEeecCccCccCHHHhccccCCCEEeccCCccC-CCChhhcccccCC
Confidence                                                    33333344677889999999999988 5667788899999


Q ss_pred             EEEcCCCcCCCCCCccccCCCCCCEEEecCcccccc-cCcccccccccCeEEccCCcCCCCC--CcccCCCCCccEEEcc
Q 037302          167 NLYLAYNNLVGPLPKEVGNMKNLDSLLLNRNSLTGP-IPSTIGYLNLGGKLDLSHNRLDSPI--PPTIGNLTNLTSLDLS  243 (408)
Q Consensus       167 ~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~-~~~~~~~~~~L~~l~l~~~~~~~~~--~~~l~~~~~L~~L~l~  243 (408)
                      +|++++|.+....+..+..+++|+.|++++|.+... ....+..++.|+.++++++.+....  +..+..+++|++|+++
T Consensus       305 ~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~  384 (606)
T 3t6q_A          305 KLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLS  384 (606)
T ss_dssp             EEECTTCCCSBGGGGCGGGCTTCSEEECCSCSSCCBCCSSTTTTCTTCCEEECCSSCCCEEEESTTTTTTCTTCCEEECC
T ss_pred             EEECccCCcCcCchhhhhccCcCCEEECCCCCcccccchhhhhccCcCCEEECCCCccccccCcchhcccCCCCCEEECC
Confidence            999999998876677889999999999999987643 3455888999999999999887654  5678889999999999


Q ss_pred             CCcccccCCccccCCCCCCEEeCCCCcccccCC-ccccCCCCCcEEeCCCCccccCCCcCCcCCCCCcEEEcCCCccCCc
Q 037302          244 SNQLSGLLPREVGNLKYLDSLSLDGNNLIGSIP-PTIGYLTNLTSLNLGYNQLSSSIPPELMNCSQLQNLVLSHNTLSGI  322 (408)
Q Consensus       244 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~  322 (408)
                      +|.+.+..+..+..+++|+.|++++|.+....+ ..+..+++|++|++++|.++...+..+..+++|++|++++|++.+.
T Consensus       385 ~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~  464 (606)
T 3t6q_A          385 YNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKG  464 (606)
T ss_dssp             SCSCEEECTTTTTTCTTCSEEECTTCCEECCTTCCTTTTCTTCCEEECTTCCCBTTCTTTTTTCTTCCEEECTTCBCGGG
T ss_pred             CCcCCcCCHHHhcCCccCCeEECCCCcCCCcccchhhhCcccCCEEECCCCccCCcCHHHHhCCCCCCEEECCCCCCCcc
Confidence            999887778888899999999999999875543 4488899999999999999988888899999999999999998752


Q ss_pred             ---CCcccccCCCccEEEcCCccccccCCcCCCCCCCccEEeCCCCccCCcCCccccCCC--eEEccCCccCCCCCCCcC
Q 037302          323 ---VPPEIGNLTHLRQLDLSHNFINGTIPSQLGYIPNISAVDLSKNNLSGVVPASVRIIP--KLIVSENNLELENSTSSE  397 (408)
Q Consensus       323 ---~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~l~--~l~l~~n~~~~~~~~~~~  397 (408)
                         ....+..+++|++|++++|.+++..|..+..+++|+.|++++|++.+..|+.++++.  +|++++|++++.+|..+.
T Consensus       465 ~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~L~L~~N~l~~~~~~~~~  544 (606)
T 3t6q_A          465 NIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGIYLNLASNHISIILPSLLP  544 (606)
T ss_dssp             EECSSCGGGGCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCGGGGGGGTTCCSCEEECCSSCCCCCCGGGHH
T ss_pred             ccccchhhccCCCccEEECCCCccCccChhhhccccCCCEEECCCCccCcCChhHhCcccccEEECcCCcccccCHhhcc
Confidence               235688899999999999999988889999999999999999999999988888666  899999999988888888


Q ss_pred             CCCCCCCC
Q 037302          398 NAPPPQAK  405 (408)
Q Consensus       398 ~~~~~~~~  405 (408)
                      .++.|+.+
T Consensus       545 ~l~~L~~L  552 (606)
T 3t6q_A          545 ILSQQRTI  552 (606)
T ss_dssp             HHHTSSEE
T ss_pred             cCCCCCEE
Confidence            77776644

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=100.00  E-value=1.7e-41  Score=332.02  Aligned_cols=394  Identities=21%  Similarity=0.208  Sum_probs=235.2

Q ss_pred             CCCcccccccccCCCCCCcEEEcCCCccccccchhhccCCCCcEEeCCCCcCCCCCcccccCCCCCcEEeCCCceecccC
Q 037302            4 NGNAAELSQLNFTCFPNLESIIIPYTLLSGRIPSEIGALSKLEELALPYNSLTGTIPAEIGSLRNLVELDLSNNILNGSI   83 (408)
Q Consensus         4 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~   83 (408)
                      +|.++.+...+|.++++|++|++++|.+.+..+..|..+++|++|++++|.++...+..|.++++|++|++++|.+....
T Consensus        41 ~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~  120 (606)
T 3vq2_A           41 FNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVETKLASLE  120 (606)
T ss_dssp             TSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCCCCTTSSTTCTTCCEEECTTSCCCCSS
T ss_pred             CCCcCEeChhhccCCccCcEEeCCCCcccccCHHHhhchhhcCEeECCCCcccccChhhcCCcccCCEEEccCCcccccc
Confidence            35566777777777777777777777777666667777777777777777777666777777777777777777776555


Q ss_pred             cccccCCCCCceeecCCcccccc-CCCcCCCCCCCCEEEcCCCeecccCcccccCCCCCc----eEeccCCcccCcCchh
Q 037302           84 PLEFGNLKDLDALRLRGNKLDGL-IPSSIGNLTNLTHLDLSLNQLSGRLPQEVGNLKNLL----SLFLDNNNLTGPIPST  158 (408)
Q Consensus        84 ~~~~~~l~~L~~L~l~~~~i~~~-~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~----~L~l~~~~~~~~~~~~  158 (408)
                      +..+.++++|++|++++|.+... .|..+.++++|++|++++|.+....+..+..+++|+    +++++++.++......
T Consensus       121 ~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~~l~~L~l~~n~l~~~~~~~  200 (606)
T 3vq2_A          121 SFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMSLNPIDFIQDQA  200 (606)
T ss_dssp             SSCCTTCTTCCEEECCSSCCCCCCCCGGGGTCTTCCEEECCSSCCCEECTTTTHHHHHCTTCCCEEECTTCCCCEECTTT
T ss_pred             ccccCCCCCCCEEeCCCCcccceechHhHhhcCCCCEEEccCCcceecChhhhhhhhccccccceeeccCCCcceeCccc
Confidence            56677777777777777776642 366677777777777777766544444333322221    3333333322111111


Q ss_pred             --------------------------------------------------------------------------------
Q 037302          159 --------------------------------------------------------------------------------  158 (408)
Q Consensus       159 --------------------------------------------------------------------------------  158 (408)
                                                                                                      
T Consensus       201 ~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~  280 (606)
T 3vq2_A          201 FQGIKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVK  280 (606)
T ss_dssp             TTTCEEEEEEEESCCSCHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCGGGGTTGGGSEEEEEEECCCTTCCGGGGS
T ss_pred             ccCceeeeeeccCCccchhHHHHHhccccccccccccccccccCCcccccChHHhhhhhhccHhheeccccccccccccc
Confidence                                                                                            


Q ss_pred             hccCCCCCEEEcCCCcCCCCCCccccCCCCCCEEEecCcccccccCcccccccccCeEEccCC-----------------
Q 037302          159 LYHLNQLSNLYLAYNNLVGPLPKEVGNMKNLDSLLLNRNSLTGPIPSTIGYLNLGGKLDLSHN-----------------  221 (408)
Q Consensus       159 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~-----------------  221 (408)
                      +..+++|+.++++++.+.. .+ .+..+++|++|++.+|.+. ..+ .+ .++.|+.++++++                 
T Consensus       281 ~~~l~~L~~L~l~~~~~~~-l~-~l~~~~~L~~L~l~~n~l~-~lp-~~-~l~~L~~L~l~~n~~~~~~~~~~l~~L~~L  355 (606)
T 3vq2_A          281 FHCLANVSAMSLAGVSIKY-LE-DVPKHFKWQSLSIIRCQLK-QFP-TL-DLPFLKSLTLTMNKGSISFKKVALPSLSYL  355 (606)
T ss_dssp             CGGGTTCSEEEEESCCCCC-CC-CCCTTCCCSEEEEESCCCS-SCC-CC-CCSSCCEEEEESCSSCEECCCCCCTTCCEE
T ss_pred             cccCCCCCEEEecCccchh-hh-hccccccCCEEEcccccCc-ccc-cC-CCCccceeeccCCcCccchhhccCCCCCEE
Confidence            2223344444444444322 12 3445555666666665552 222 22 4444444444444                 


Q ss_pred             -----cCCCC--CCcccCCCCCccEEEccCCcccccCCccccCCCCCCEEeCCCCcccccCC-ccccCCCCCcEEeCCCC
Q 037302          222 -----RLDSP--IPPTIGNLTNLTSLDLSSNQLSGLLPREVGNLKYLDSLSLDGNNLIGSIP-PTIGYLTNLTSLNLGYN  293 (408)
Q Consensus       222 -----~~~~~--~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~-~~~~~~~~L~~L~l~~~  293 (408)
                           .+...  .+..+..+++|++|++++|.+.. .+..+..+++|+.|++++|.+....+ ..+..+++|++|++++|
T Consensus       356 ~ls~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~-~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n  434 (606)
T 3vq2_A          356 DLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAII-MSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYT  434 (606)
T ss_dssp             ECCSSCEEEEEECCHHHHCCSCCCEEECCSCSEEE-ECCCCTTCTTCCEEECTTSEEESTTTTTTTTTCTTCCEEECTTS
T ss_pred             ECcCCccCCCcchhhhhccCCcccEeECCCCcccc-chhhccCCCCCCeeECCCCccCCccChhhhhccccCCEEECcCC
Confidence                 33221  12333444555555555554442 22445556666666666666554433 45566666777777776


Q ss_pred             ccccCCCcCCcCCCCCcEEEcCCCccCC-cCCcccccCCCccEEEcCCccccccCCcCCCCCCCccEEeCCCCccCCcCC
Q 037302          294 QLSSSIPPELMNCSQLQNLVLSHNTLSG-IVPPEIGNLTHLRQLDLSHNFINGTIPSQLGYIPNISAVDLSKNNLSGVVP  372 (408)
Q Consensus       294 ~~~~~~~~~~~~~~~L~~L~l~~~~~~~-~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~  372 (408)
                      .+....+..+.++++|++|++++|.+.+ ..+..+..+++|++|++++|++++..|..+..+++|+.|++++|++.+..|
T Consensus       435 ~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~  514 (606)
T 3vq2_A          435 NTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDS  514 (606)
T ss_dssp             CCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCEEG
T ss_pred             CCCccchhhhcCCCCCCEEECCCCcCCCcchHHhhccCCCCCEEECCCCcCCccChhhhcccccCCEEECCCCcCCCcCH
Confidence            6666566666667777777777776664 345666667777777777777776666667777777777777777777666


Q ss_pred             ccccC---CCeEEccCCccCCCCCCCcCCCCC-CCC
Q 037302          373 ASVRI---IPKLIVSENNLELENSTSSENAPP-PQA  404 (408)
Q Consensus       373 ~~~~~---l~~l~l~~n~~~~~~~~~~~~~~~-~~~  404 (408)
                      ..+++   +++|++++|+++ .+|..+..++. |+.
T Consensus       515 ~~~~~l~~L~~L~l~~N~l~-~~p~~~~~l~~~L~~  549 (606)
T 3vq2_A          515 SHYNQLYSLSTLDCSFNRIE-TSKGILQHFPKSLAF  549 (606)
T ss_dssp             GGTTTCTTCCEEECTTSCCC-CEESCGGGSCTTCCE
T ss_pred             HHccCCCcCCEEECCCCcCc-ccCHhHhhhcccCcE
Confidence            55553   457777777775 56666666653 543

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=100.00  E-value=1.8e-41  Score=329.55  Aligned_cols=394  Identities=22%  Similarity=0.230  Sum_probs=246.6

Q ss_pred             CCCcccccccccCCCCCCcEEEcCCCccccccchhhccCCCCcEEeCCCCcCCCCCcccccCCCCCcEEeCCCceecccC
Q 037302            4 NGNAAELSQLNFTCFPNLESIIIPYTLLSGRIPSEIGALSKLEELALPYNSLTGTIPAEIGSLRNLVELDLSNNILNGSI   83 (408)
Q Consensus         4 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~   83 (408)
                      +|.++.+...+|.++++|++|++++|.+.+..+..|..+++|++|++++|.++...+..|.++++|++|++++|.+....
T Consensus        37 ~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~  116 (570)
T 2z63_A           37 FNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLE  116 (570)
T ss_dssp             SCCCCEECTTTTTTCSSCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTSCCCCST
T ss_pred             CCccCccChhHhhCCCCceEEECCCCcCCccCcccccCchhCCEEeCcCCcCCccCHhhhcCccccccccccccccccCC
Confidence            34566666667777777777777777666555566667777777777777666555566677777777777777666444


Q ss_pred             cccccCCCCCceeecCCcccccc-CCCcCCCCCCCCEEEcCCCeecccCcccccCCCCC----ceEeccCCcccCcCchh
Q 037302           84 PLEFGNLKDLDALRLRGNKLDGL-IPSSIGNLTNLTHLDLSLNQLSGRLPQEVGNLKNL----LSLFLDNNNLTGPIPST  158 (408)
Q Consensus        84 ~~~~~~l~~L~~L~l~~~~i~~~-~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L----~~L~l~~~~~~~~~~~~  158 (408)
                      +..+.++++|++|++++|.+..+ .|..+.++++|++|++++|.+....+..+..+++|    +.++++++.+....+..
T Consensus       117 ~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~~~~~L~l~~n~l~~~~~~~  196 (570)
T 2z63_A          117 NFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGA  196 (570)
T ss_dssp             TCSCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECTTSCCCEECGGGGHHHHTCTTCCCEEECTTCCCCEECTTT
T ss_pred             CccccccccccEEecCCCccceecChhhhcccCCCCEEeCcCCccceecHHHccchhccchhhhhcccCCCCceecCHHH
Confidence            44566677777777777766543 35566667777777777766654444445444444    45555554443222221


Q ss_pred             --------------------------------------------------------------------------------
Q 037302          159 --------------------------------------------------------------------------------  158 (408)
Q Consensus       159 --------------------------------------------------------------------------------  158 (408)
                                                                                                      
T Consensus       197 ~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~  276 (570)
T 2z63_A          197 FKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIID  276 (570)
T ss_dssp             TTTCEEEEEEEESCCSCTTHHHHHHHTTTTCEEEEEEEEECCCCSSCEECCTTTTGGGGGSEEEEEEEEETTEEESCSTT
T ss_pred             hccCcceeEecccccccccchhhhhcCccccceeeeccccccCchhhhhcchhhhccccccchhhhhhhcchhhhhhchh
Confidence                                                                                            


Q ss_pred             -hccCCCCCEEEcCCCcCCCCCCccccCCCCCCEEEecCcccccccCcccccccccCeEEccCCcCCCCCCcccCCCCCc
Q 037302          159 -LYHLNQLSNLYLAYNNLVGPLPKEVGNMKNLDSLLLNRNSLTGPIPSTIGYLNLGGKLDLSHNRLDSPIPPTIGNLTNL  237 (408)
Q Consensus       159 -~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~l~~~~~L  237 (408)
                       +..+++|+.++++++.+. ..+..+..+ +|++|++.+|.+.. .+.  ..++.|+.++++++.+....+.  ..+++|
T Consensus       277 ~~~~l~~L~~L~l~~~~l~-~l~~~~~~~-~L~~L~l~~n~~~~-l~~--~~l~~L~~L~l~~n~~~~~~~~--~~~~~L  349 (570)
T 2z63_A          277 LFNCLTNVSSFSLVSVTIE-RVKDFSYNF-GWQHLELVNCKFGQ-FPT--LKLKSLKRLTFTSNKGGNAFSE--VDLPSL  349 (570)
T ss_dssp             TTGGGTTCSEEEEESCEEC-SCCBCCSCC-CCSEEEEESCBCSS-CCB--CBCSSCCEEEEESCBSCCBCCC--CBCTTC
T ss_pred             hhcCcCcccEEEecCccch-hhhhhhccC-CccEEeeccCcccc-cCc--ccccccCEEeCcCCcccccccc--ccCCCC
Confidence             222334444444444333 223333333 44444444444431 111  2344455555555444332221  456777


Q ss_pred             cEEEccCCcccccC--CccccCCCCCCEEeCCCCcccccCCccccCCCCCcEEeCCCCccccCCC-cCCcCCCCCcEEEc
Q 037302          238 TSLDLSSNQLSGLL--PREVGNLKYLDSLSLDGNNLIGSIPPTIGYLTNLTSLNLGYNQLSSSIP-PELMNCSQLQNLVL  314 (408)
Q Consensus       238 ~~L~l~~~~~~~~~--~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~-~~~~~~~~L~~L~l  314 (408)
                      ++|++++|.+....  +..+..+++|++|++++|.+...... +..+++|++|++++|.+....+ ..+.++++|++|++
T Consensus       350 ~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~-~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l  428 (570)
T 2z63_A          350 EFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSN-FLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDI  428 (570)
T ss_dssp             CEEECCSSCCBEEEEEEHHHHTCSCCCEEECCSCSEEEEEEE-EETCTTCCEEECTTSEEESCTTSCTTTTCTTCCEEEC
T ss_pred             CEEeCcCCccCccccccccccccCccCEEECCCCcccccccc-ccccCCCCEEEccCCccccccchhhhhcCCCCCEEeC
Confidence            77777777665432  44566777788888887776644333 6777788888888887775544 45677788888888


Q ss_pred             CCCccCCcCCcccccCCCccEEEcCCcccc-ccCCcCCCCCCCccEEeCCCCccCCcCCcccc---CCCeEEccCCccCC
Q 037302          315 SHNTLSGIVPPEIGNLTHLRQLDLSHNFIN-GTIPSQLGYIPNISAVDLSKNNLSGVVPASVR---IIPKLIVSENNLEL  390 (408)
Q Consensus       315 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~-~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~---~l~~l~l~~n~~~~  390 (408)
                      ++|.+.+..+..+..+++|++|++++|.++ +.+|..+..+++|+.|++++|++.+..|..+.   ++++|++++|++++
T Consensus       429 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~  508 (570)
T 2z63_A          429 SHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKS  508 (570)
T ss_dssp             TTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSC
T ss_pred             cCCcccccchhhhhcCCcCcEEECcCCcCccccchhhhhcccCCCEEECCCCccccCChhhhhcccCCCEEeCCCCcCCC
Confidence            888777666777777788888888888776 35677777788888888888888777776654   45588888888877


Q ss_pred             CCCCCcCCCCCCCCC
Q 037302          391 ENSTSSENAPPPQAK  405 (408)
Q Consensus       391 ~~~~~~~~~~~~~~~  405 (408)
                      .+|..+.+++.|+.+
T Consensus       509 ~~~~~~~~l~~L~~L  523 (570)
T 2z63_A          509 VPDGIFDRLTSLQKI  523 (570)
T ss_dssp             CCTTTTTTCTTCCEE
T ss_pred             CCHHHhhcccCCcEE
Confidence            777777777776644

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=100.00  E-value=1.6e-40  Score=329.22  Aligned_cols=387  Identities=23%  Similarity=0.249  Sum_probs=231.4

Q ss_pred             CCCcccccccccCCCCCCcEEEcCCCccccccchhhccCCCCcEEeCCCCcCCCCCcccccCCCCCcEEeCCCceecccC
Q 037302            4 NGNAAELSQLNFTCFPNLESIIIPYTLLSGRIPSEIGALSKLEELALPYNSLTGTIPAEIGSLRNLVELDLSNNILNGSI   83 (408)
Q Consensus         4 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~   83 (408)
                      +|.++.++..+|.++++|++|+++++.+.+..+..+..+++|++|++++|.++...+..|.++++|++|++++|.+....
T Consensus        34 ~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~  113 (680)
T 1ziw_A           34 HNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIK  113 (680)
T ss_dssp             SSCCCCCCGGGGGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCC
T ss_pred             CCCCCCcCHHHHhCCCcCcEEECCCCccCccCHHHHhcccCcCEEECCCCccCccChhhhccCCCCCEEECCCCccCccC
Confidence            45677788888888888899998888888777888888888888888888887665567888888888888888887666


Q ss_pred             cccccCCCCCceeecCCccccccCCCcCCCCCCCCEEEcCCCeecccCccccc--CCCCCceEeccCCcccCcCchhhcc
Q 037302           84 PLEFGNLKDLDALRLRGNKLDGLIPSSIGNLTNLTHLDLSLNQLSGRLPQEVG--NLKNLLSLFLDNNNLTGPIPSTLYH  161 (408)
Q Consensus        84 ~~~~~~l~~L~~L~l~~~~i~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~--~l~~L~~L~l~~~~~~~~~~~~~~~  161 (408)
                      +..|.++++|++|++++|.+....+..+.++++|++|++++|.+....+..+.  .+++|++|++++|.+....+..+..
T Consensus       114 ~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~  193 (680)
T 1ziw_A          114 NNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIKEFSPGCFHA  193 (680)
T ss_dssp             SCTTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEEECCSSCCCCBCHHHHGGGTTCEESEEECTTCCCCCBCTTGGGG
T ss_pred             hhHccccCCCCEEECCCCcccccCchhhcccccCCEEEccCCcccccCHHHhhccccccccEEECCCCcccccChhhhhh
Confidence            67788888888888888888777777788888888888888877655444433  3467777777776655443333322


Q ss_pred             C---------------------------CC--------------------------CCEEEcCCCcCCCCCCccccCCCC
Q 037302          162 L---------------------------NQ--------------------------LSNLYLAYNNLVGPLPKEVGNMKN  188 (408)
Q Consensus       162 ~---------------------------~~--------------------------L~~L~l~~~~~~~~~~~~~~~~~~  188 (408)
                      +                           ++                          |+.|++++|.+....+..+..+++
T Consensus       194 l~~L~~L~l~~~~l~~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~  273 (680)
T 1ziw_A          194 IGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQ  273 (680)
T ss_dssp             SSEECEEECTTCCCHHHHHHHHHHHHTTSCCCEEECTTSCCCEECTTTTGGGGGSCCCEEECTTSCCCEECTTTTTTCTT
T ss_pred             hhhhhhhhccccccChhhHHHHHHHhhhccccEEEccCCcccccChhHhhccCcCCCCEEECCCCCcCccCcccccCccc
Confidence            2                           22                          444444444433333333444444


Q ss_pred             CCEEEecCcccccccCcccccccccCeEEccCCcCCC---------CCCcccCCCCCccEEEccCCcccccCCccccCCC
Q 037302          189 LDSLLLNRNSLTGPIPSTIGYLNLGGKLDLSHNRLDS---------PIPPTIGNLTNLTSLDLSSNQLSGLLPREVGNLK  259 (408)
Q Consensus       189 L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~---------~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~  259 (408)
                      |++|++++|.+.+..+..+..++.|+.++++++....         .....+..+++|++|++++|.+.+..+..+..++
T Consensus       274 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~lp~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~  353 (680)
T 1ziw_A          274 LEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLI  353 (680)
T ss_dssp             CCEEECCSCCBSEECTTTTTTCTTCCEEECTTCBCCC------CCEECTTTTTTCTTCCEEECCSCCBCCCCTTTTTTCT
T ss_pred             ccEeeCCCCccCccChhhhcCCCCccEEeccchhhhcccccccccccChhhcccCCCCCEEECCCCccCCCChhHhcccc
Confidence            5555554444444444444444555555544332111         0111345556666666666666655555556666


Q ss_pred             CCCEEeCCCCcc----------------------------cccCCccccCCCCCcEEeCCCCccccCCC-cCCcCCCCCc
Q 037302          260 YLDSLSLDGNNL----------------------------IGSIPPTIGYLTNLTSLNLGYNQLSSSIP-PELMNCSQLQ  310 (408)
Q Consensus       260 ~L~~L~l~~~~~----------------------------~~~~~~~~~~~~~L~~L~l~~~~~~~~~~-~~~~~~~~L~  310 (408)
                      +|++|++++|.+                            ....+..+..+++|++|++++|.+.+..+ ..+.++++|+
T Consensus       354 ~L~~L~Ls~n~~~~~~l~~~~f~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~  433 (680)
T 1ziw_A          354 NLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIF  433 (680)
T ss_dssp             TCCEEECTTCBSCCCEECTTTTGGGTTSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCEEECCSGGGTTCTTCC
T ss_pred             CCcEEECCCCchhhhhcchhhhcccccCcCceEECCCCCCCeEChhhhhCCCCCCEEeCCCCcCccccCcccccCccccc
Confidence            666666655432                            11122233334444444444444432222 2344444444


Q ss_pred             EEEcCCCccCCcCCcccccCCCccEEEcCCcccc--ccCCcCCCCCCCccEEeCCCCccCCcCCcccc---CCCeEEccC
Q 037302          311 NLVLSHNTLSGIVPPEIGNLTHLRQLDLSHNFIN--GTIPSQLGYIPNISAVDLSKNNLSGVVPASVR---IIPKLIVSE  385 (408)
Q Consensus       311 ~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~--~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~---~l~~l~l~~  385 (408)
                      +|++++|++.+..+..+..+++|+.|++++|.+.  +..|..+..+++|+.|++++|++.++.|..+.   ++++|++++
T Consensus       434 ~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~p~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~Ls~  513 (680)
T 1ziw_A          434 EIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQH  513 (680)
T ss_dssp             EEECCSCSEEECCTTTTTTCTTCCEEECTTSCCBCTTCSSCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred             EEecCCCCcceeChhhhhcCcccccchhccccccccccCCcccccCCCCCEEECCCCCCCcCChhhhccccccCEEeCCC
Confidence            4444444444344444444555555555555443  23455566666666666666666666555443   344666666


Q ss_pred             CccCC
Q 037302          386 NNLEL  390 (408)
Q Consensus       386 n~~~~  390 (408)
                      |++++
T Consensus       514 N~l~~  518 (680)
T 1ziw_A          514 NNLAR  518 (680)
T ss_dssp             SCCGG
T ss_pred             CCccc
Confidence            66654

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=100.00  E-value=5.2e-41  Score=328.54  Aligned_cols=386  Identities=20%  Similarity=0.197  Sum_probs=302.1

Q ss_pred             CCCcccccccccCCCCCCcEEEcCCCccccccchhhccCCCCcEEeCCCCcCCCCCcccccCCCCCcEEeCCCceecc-c
Q 037302            4 NGNAAELSQLNFTCFPNLESIIIPYTLLSGRIPSEIGALSKLEELALPYNSLTGTIPAEIGSLRNLVELDLSNNILNG-S   82 (408)
Q Consensus         4 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~-~   82 (408)
                      +|.++.+...+|.++++|++|++++|.+.+..|..+..+++|++|++++|.+....+..++++++|++|++++|.+.. .
T Consensus        65 ~n~l~~i~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~  144 (606)
T 3vq2_A           65 RCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCK  144 (606)
T ss_dssp             TCCCCEECTTTTTTCTTCCEEECTTCCCCCCCTTSSTTCTTCCEEECTTSCCCCSSSSCCTTCTTCCEEECCSSCCCCCC
T ss_pred             CCcccccCHHHhhchhhcCEeECCCCcccccChhhcCCcccCCEEEccCCccccccccccCCCCCCCEEeCCCCccccee
Confidence            467888989999999999999999999998888999999999999999999987777889999999999999999875 4


Q ss_pred             CcccccCCCCCceeecCCccccccCCCcCCCCCCCC----EEEcCCCeecccCccc------------------------
Q 037302           83 IPLEFGNLKDLDALRLRGNKLDGLIPSSIGNLTNLT----HLDLSLNQLSGRLPQE------------------------  134 (408)
Q Consensus        83 ~~~~~~~l~~L~~L~l~~~~i~~~~~~~l~~l~~L~----~L~l~~~~~~~~~~~~------------------------  134 (408)
                      .|..+.++++|++|++++|.+....+..+..+.+|+    ++++++|.+....+..                        
T Consensus       145 lp~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~~l~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~  224 (606)
T 3vq2_A          145 LPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMSLNPIDFIQDQAFQGIKLHELTLRGNFNSSNIMKTC  224 (606)
T ss_dssp             CCGGGGTCTTCCEEECCSSCCCEECTTTTHHHHHCTTCCCEEECTTCCCCEECTTTTTTCEEEEEEEESCCSCHHHHHHH
T ss_pred             chHhHhhcCCCCEEEccCCcceecChhhhhhhhccccccceeeccCCCcceeCcccccCceeeeeeccCCccchhHHHHH
Confidence            688899999999999999988776665554433322    3444443332111110                        


Q ss_pred             --------------------------------------------------------ccCCCCCceEeccCCcccCcCchh
Q 037302          135 --------------------------------------------------------VGNLKNLLSLFLDNNNLTGPIPST  158 (408)
Q Consensus       135 --------------------------------------------------------~~~l~~L~~L~l~~~~~~~~~~~~  158 (408)
                                                                              +..+++|+.++++++.+.. .+ .
T Consensus       225 ~~~l~~L~~l~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~-l~-~  302 (606)
T 3vq2_A          225 LQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVKFHCLANVSAMSLAGVSIKY-LE-D  302 (606)
T ss_dssp             HHTTTTCEEEEEEEECCTTSCCCSCCCGGGGTTGGGSEEEEEEECCCTTCCGGGGSCGGGTTCSEEEEESCCCCC-CC-C
T ss_pred             hccccccccccccccccccCCcccccChHHhhhhhhccHhheeccccccccccccccccCCCCCEEEecCccchh-hh-h
Confidence                                                                    2223444444444444332 11 3


Q ss_pred             hccCCCCCEEEcCCCcCCCCCC--------------------ccccCCCCCCEEEecCcccccc--cCcccccccccCeE
Q 037302          159 LYHLNQLSNLYLAYNNLVGPLP--------------------KEVGNMKNLDSLLLNRNSLTGP--IPSTIGYLNLGGKL  216 (408)
Q Consensus       159 ~~~~~~L~~L~l~~~~~~~~~~--------------------~~~~~~~~L~~L~l~~~~~~~~--~~~~~~~~~~L~~l  216 (408)
                      +..+++|++|++++|.+. .++                    ..+..+++|+.|++++|.+.+.  .+..+..++.|+.+
T Consensus       303 l~~~~~L~~L~l~~n~l~-~lp~~~l~~L~~L~l~~n~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L  381 (606)
T 3vq2_A          303 VPKHFKWQSLSIIRCQLK-QFPTLDLPFLKSLTLTMNKGSISFKKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHL  381 (606)
T ss_dssp             CCTTCCCSEEEEESCCCS-SCCCCCCSSCCEEEEESCSSCEECCCCCCTTCCEEECCSSCEEEEEECCHHHHCCSCCCEE
T ss_pred             ccccccCCEEEcccccCc-ccccCCCCccceeeccCCcCccchhhccCCCCCEEECcCCccCCCcchhhhhccCCcccEe
Confidence            344444455544444431 111                    1345677788888888777644  26677889999999


Q ss_pred             EccCCcCCCCCCcccCCCCCccEEEccCCcccccCC-ccccCCCCCCEEeCCCCcccccCCccccCCCCCcEEeCCCCcc
Q 037302          217 DLSHNRLDSPIPPTIGNLTNLTSLDLSSNQLSGLLP-REVGNLKYLDSLSLDGNNLIGSIPPTIGYLTNLTSLNLGYNQL  295 (408)
Q Consensus       217 ~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~  295 (408)
                      ++++|.+.. .+..+..+++|+.|++++|.+....+ ..+..+++|+.|++++|.+....+..+..+++|++|++++|.+
T Consensus       382 ~L~~n~l~~-~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l  460 (606)
T 3vq2_A          382 DLSFNGAII-MSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSF  460 (606)
T ss_dssp             ECCSCSEEE-ECCCCTTCTTCCEEECTTSEEESTTTTTTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEE
T ss_pred             ECCCCcccc-chhhccCCCCCCeeECCCCccCCccChhhhhccccCCEEECcCCCCCccchhhhcCCCCCCEEECCCCcC
Confidence            999998765 34678889999999999999886655 6788999999999999999877888899999999999999999


Q ss_pred             cc-CCCcCCcCCCCCcEEEcCCCccCCcCCcccccCCCccEEEcCCccccccCCcCCCCCCCccEEeCCCCccCCcCCc-
Q 037302          296 SS-SIPPELMNCSQLQNLVLSHNTLSGIVPPEIGNLTHLRQLDLSHNFINGTIPSQLGYIPNISAVDLSKNNLSGVVPA-  373 (408)
Q Consensus       296 ~~-~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~-  373 (408)
                      .+ ..+..+..+++|++|++++|.+++..+..+..+++|++|++++|++++..|..+..+++|+.|++++|+++.+.+. 
T Consensus       461 ~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~p~~~  540 (606)
T 3vq2_A          461 KDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIETSKGIL  540 (606)
T ss_dssp             GGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCEEGGGTTTCTTCCEEECTTSCCCCEESCG
T ss_pred             CCcchHHhhccCCCCCEEECCCCcCCccChhhhcccccCCEEECCCCcCCCcCHHHccCCCcCCEEECCCCcCcccCHhH
Confidence            86 3677899999999999999999988888999999999999999999988899999999999999999999965543 


Q ss_pred             -ccc-CCCeEEccCCccCCCCC
Q 037302          374 -SVR-IIPKLIVSENNLELENS  393 (408)
Q Consensus       374 -~~~-~l~~l~l~~n~~~~~~~  393 (408)
                       .+. ++++|++++|++.+..+
T Consensus       541 ~~l~~~L~~l~l~~N~~~c~c~  562 (606)
T 3vq2_A          541 QHFPKSLAFFNLTNNSVACICE  562 (606)
T ss_dssp             GGSCTTCCEEECCSCCCCCSST
T ss_pred             hhhcccCcEEEccCCCcccCCc
Confidence             222 47899999999987554

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=100.00  E-value=1.1e-39  Score=323.23  Aligned_cols=177  Identities=21%  Similarity=0.224  Sum_probs=93.6

Q ss_pred             CcccCCCCCccEEEccCCcccccC-CccccCCCCCCEEeCCCCcccccCCccccCCCCCcEEeCCCCccc--cCCCcCCc
Q 037302          228 PPTIGNLTNLTSLDLSSNQLSGLL-PREVGNLKYLDSLSLDGNNLIGSIPPTIGYLTNLTSLNLGYNQLS--SSIPPELM  304 (408)
Q Consensus       228 ~~~l~~~~~L~~L~l~~~~~~~~~-~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~--~~~~~~~~  304 (408)
                      +..+..+++|+.|++++|.+.+.. ...+..+++|++|++++|.+....+..+..+++|++|++++|.+.  +..+..+.
T Consensus       398 ~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~p~~~~  477 (680)
T 1ziw_A          398 SDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQ  477 (680)
T ss_dssp             TTTTTTCTTCCEEECCSSCCEEECCSGGGTTCTTCCEEECCSCSEEECCTTTTTTCTTCCEEECTTSCCBCTTCSSCTTT
T ss_pred             hhhhhCCCCCCEEeCCCCcCccccCcccccCcccccEEecCCCCcceeChhhhhcCcccccchhccccccccccCCcccc
Confidence            334444555555555555544222 234444555555555555544333334444444444444444433  23344455


Q ss_pred             CCCCCcEEEcCCCccCCcCCcccccCCCccEEEcCCccccccCC--------cCCCCCCCccEEeCCCCccCCcCCcccc
Q 037302          305 NCSQLQNLVLSHNTLSGIVPPEIGNLTHLRQLDLSHNFINGTIP--------SQLGYIPNISAVDLSKNNLSGVVPASVR  376 (408)
Q Consensus       305 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~--------~~~~~~~~L~~L~l~~~~l~~~~~~~~~  376 (408)
                      .+++|++|++++|.++++.+..+..+++|++|++++|.+++..+        ..+..+++|+.|++++|++..+.+..|.
T Consensus       478 ~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~  557 (680)
T 1ziw_A          478 PLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFK  557 (680)
T ss_dssp             TCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCGGGGSTTSTTSCCCTTTTCTTCCEEECCSSCCCCCCTTTTT
T ss_pred             cCCCCCEEECCCCCCCcCChhhhccccccCEEeCCCCCccccchhhccCCcchhhcCCCCCCEEECCCCCCCCCCHHHcc
Confidence            56666666666666665555556666666666666666654321        1245566666666666666655444443


Q ss_pred             ---CCCeEEccCCccCCCCCCCcCCCCCCCC
Q 037302          377 ---IIPKLIVSENNLELENSTSSENAPPPQA  404 (408)
Q Consensus       377 ---~l~~l~l~~n~~~~~~~~~~~~~~~~~~  404 (408)
                         ++++|++++|.+++..+..+.+++.|+.
T Consensus       558 ~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~  588 (680)
T 1ziw_A          558 DLFELKIIDLGLNNLNTLPASVFNNQVSLKS  588 (680)
T ss_dssp             TCTTCCEEECCSSCCCCCCTTTTTTCTTCCE
T ss_pred             cccCcceeECCCCCCCcCCHhHhCCCCCCCE
Confidence               3446666666666544444556665554

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=100.00  E-value=1.8e-40  Score=335.28  Aligned_cols=398  Identities=23%  Similarity=0.221  Sum_probs=271.8

Q ss_pred             CCCcccccccccCCCCCCcEEEcCCCcccccc-chhhccCCCCcEEeCCCCcCCCCCcccccCCCCCcEEeCCCceeccc
Q 037302            4 NGNAAELSQLNFTCFPNLESIIIPYTLLSGRI-PSEIGALSKLEELALPYNSLTGTIPAEIGSLRNLVELDLSNNILNGS   82 (408)
Q Consensus         4 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~-~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~   82 (408)
                      +|.++.+...+|.++++|++|++++|...+.+ +..|..+++|++|++++|.+....+..|.++++|++|++++|.+.+.
T Consensus        33 ~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~  112 (844)
T 3j0a_A           33 FNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDA  112 (844)
T ss_dssp             SCCCCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEECTTSSCSCSSCCCEECTTCCCSSC
T ss_pred             CCcCCccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcccCHhHccCCcccCEeeCcCCCCCcc
Confidence            46677788888888888888888888655554 67788888888888888888877788888888888888888888754


Q ss_pred             Cccc--ccCCCCCceeecCCccccccCC-CcCCCCCCCCEEEcCCCeecccCcccccCC--CC-----------------
Q 037302           83 IPLE--FGNLKDLDALRLRGNKLDGLIP-SSIGNLTNLTHLDLSLNQLSGRLPQEVGNL--KN-----------------  140 (408)
Q Consensus        83 ~~~~--~~~l~~L~~L~l~~~~i~~~~~-~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l--~~-----------------  140 (408)
                      .+..  +.++++|++|++++|.+....+ ..|.++++|++|++++|.+....+..+..+  ++                 
T Consensus       113 ~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~l~~l~~~~L~~L~L~~n~l~~~~~~  192 (844)
T 3j0a_A          113 VLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAANSLYSRVSV  192 (844)
T ss_dssp             CSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCCSGGGHHHHHCSSCCCEECCSBSCCCCCC
T ss_pred             cccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCeeCHHHcccccCCccceEECCCCcccccccc
Confidence            4443  7888888888888888765544 467888888888888887765544444333  33                 


Q ss_pred             -------------CceEeccCCcccCcCchhh------------------------------------cc--CCCCCEEE
Q 037302          141 -------------LLSLFLDNNNLTGPIPSTL------------------------------------YH--LNQLSNLY  169 (408)
Q Consensus       141 -------------L~~L~l~~~~~~~~~~~~~------------------------------------~~--~~~L~~L~  169 (408)
                                   |+.|++++|.+....+..+                                    ..  .++|+.|+
T Consensus       193 ~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~~~~~~~l~~~~~~~f~~l~~~~L~~L~  272 (844)
T 3j0a_A          193 DWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLD  272 (844)
T ss_dssp             CCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCCBCSSSCSSSTTGGGTTTTTTTTSCCCEEE
T ss_pred             chhhcCCccccCceeEEecCCCcCchhHHHHHHhhcCcccccceecccccccccccccccCCCChhhhhccccCCccEEE
Confidence                         4455554443321111111                                    11  14566666


Q ss_pred             cCCCcCCCCCCccccCCCCCCEEEecCcccccccCcccccccccCeEEccCCcCCCCCCcccCCCCCccEEEccCCcccc
Q 037302          170 LAYNNLVGPLPKEVGNMKNLDSLLLNRNSLTGPIPSTIGYLNLGGKLDLSHNRLDSPIPPTIGNLTNLTSLDLSSNQLSG  249 (408)
Q Consensus       170 l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~  249 (408)
                      +++|.+....+..+..+++|+.|++++|.+.+..+..+..++.|+.|++++|.+....+..+..+++|+.|++++|.+..
T Consensus       273 Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~  352 (844)
T 3j0a_A          273 LSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIAI  352 (844)
T ss_dssp             CTTCCCCEECSCCSSSCCCCCEEEEESCCCCEECTTTTTTCSSCCEEEEESCCCSCCCSCSCSSCTTCCEEECCSCCCCC
T ss_pred             CCCCcccccChhhhhcCCCCCEEECCCCcCCCCChHHhcCCCCCCEEECCCCCCCccCHHHhcCCCCCCEEECCCCCCCc
Confidence            66665554445556667777777777777766656666777777777777777766666667777777777777777765


Q ss_pred             cCCccccCCCCCCEEeCCCCcccccCC----------------------------------------ccccCCCCCcEEe
Q 037302          250 LLPREVGNLKYLDSLSLDGNNLIGSIP----------------------------------------PTIGYLTNLTSLN  289 (408)
Q Consensus       250 ~~~~~~~~~~~L~~L~l~~~~~~~~~~----------------------------------------~~~~~~~~L~~L~  289 (408)
                      ..+..+..+++|+.|++++|.+.....                                        ..+..+++|++|+
T Consensus       353 ~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~L~~L~l~~N~l~~l~~~~~~l~~L~ls~N~l~~l~~~~~~~~l~~L~~L~  432 (844)
T 3j0a_A          353 IQDQTFKFLEKLQTLDLRDNALTTIHFIPSIPDIFLSGNKLVTLPKINLTANLIHLSENRLENLDILYFLLRVPHLQILI  432 (844)
T ss_dssp             CCSSCSCSCCCCCEEEEETCCSCCCSSCCSCSEEEEESCCCCCCCCCCTTCCEEECCSCCCCSSTTHHHHTTCTTCCEEE
T ss_pred             cChhhhcCCCCCCEEECCCCCCCcccCCCCcchhccCCCCcccccccccccceeecccCccccCchhhhhhcCCccceee
Confidence            555666677777777777766542110                                        0011344455555


Q ss_pred             CCCCccccCCCc-CCcCCCCCcEEEcCCCccC-----CcCCcccccCCCccEEEcCCccccccCCcCCCCCCCccEEeCC
Q 037302          290 LGYNQLSSSIPP-ELMNCSQLQNLVLSHNTLS-----GIVPPEIGNLTHLRQLDLSHNFINGTIPSQLGYIPNISAVDLS  363 (408)
Q Consensus       290 l~~~~~~~~~~~-~~~~~~~L~~L~l~~~~~~-----~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~  363 (408)
                      +++|.++..... .+..+++|+.|++++|.+.     +..+..|..+++|+.|++++|.+++..+..+..+++|+.|+++
T Consensus       433 Ls~N~l~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls  512 (844)
T 3j0a_A          433 LNQNRFSSCSGDQTPSENPSLEQLFLGENMLQLAWETELCWDVFEGLSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLN  512 (844)
T ss_dssp             EESCCCCCCCSSSSSCSCTTCCBCEEESCCCSSSCCSCCCSSCSSCBCCEECCCCCHHHHTTCCTTSSSSCCSCSEEEEE
T ss_pred             CCCCcccccccccccccCCccccccCCCCccccccccccchhhhcCcccccEEECCCCcccccChhHccchhhhheeECC
Confidence            555544422211 2333455666666665554     2223456778889999999999888888888899999999999


Q ss_pred             CCccCCcCCcccc-CCCeEEccCCccCCCCCCCcCCCCC
Q 037302          364 KNNLSGVVPASVR-IIPKLIVSENNLELENSTSSENAPP  401 (408)
Q Consensus       364 ~~~l~~~~~~~~~-~l~~l~l~~n~~~~~~~~~~~~~~~  401 (408)
                      +|+++++.|..+. ++++|++++|++++.+|..+.++..
T Consensus       513 ~N~l~~l~~~~~~~~L~~L~Ls~N~l~~~~~~~~~~L~~  551 (844)
T 3j0a_A          513 SNRLTVLSHNDLPANLEILDISRNQLLAPNPDVFVSLSV  551 (844)
T ss_dssp             SCCCSSCCCCCCCSCCCEEEEEEECCCCCCSCCCSSCCE
T ss_pred             CCCCCccChhhhhccccEEECCCCcCCCCChhHhCCcCE
Confidence            9999988776664 6889999999999999988776554

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=100.00  E-value=4.2e-40  Score=319.93  Aligned_cols=383  Identities=21%  Similarity=0.267  Sum_probs=320.9

Q ss_pred             CCCcccccccccCCCCCCcEEEcCCCccccccchhhccCCCCcEEeCCCCcCCCCCcccccCCCCCcEEeCCCceecc-c
Q 037302            4 NGNAAELSQLNFTCFPNLESIIIPYTLLSGRIPSEIGALSKLEELALPYNSLTGTIPAEIGSLRNLVELDLSNNILNG-S   82 (408)
Q Consensus         4 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~-~   82 (408)
                      +|.++.++..+|.++++|++|+++++.+.+..+..+..+++|++|++++|.+....+..+.++++|++|++++|.+.. .
T Consensus        61 ~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~  140 (570)
T 2z63_A           61 RCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFK  140 (570)
T ss_dssp             TCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTSCCCCSTTCSCTTCTTCCEEECCSSCCCCCC
T ss_pred             CCcCCccCcccccCchhCCEEeCcCCcCCccCHhhhcCccccccccccccccccCCCccccccccccEEecCCCccceec
Confidence            456888999999999999999999999987777889999999999999999886666679999999999999999875 3


Q ss_pred             CcccccCCCCCceeecCCccccccCCCcCCCCCCC----CEEEcCCCeeccc----------------------------
Q 037302           83 IPLEFGNLKDLDALRLRGNKLDGLIPSSIGNLTNL----THLDLSLNQLSGR----------------------------  130 (408)
Q Consensus        83 ~~~~~~~l~~L~~L~l~~~~i~~~~~~~l~~l~~L----~~L~l~~~~~~~~----------------------------  130 (408)
                      .|..+.++++|++|++++|.+....+..+..+++|    +++++++|.+...                            
T Consensus       141 lp~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~~~~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~  220 (570)
T 2z63_A          141 LPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTC  220 (570)
T ss_dssp             CCGGGGGCTTCCEEECTTSCCCEECGGGGHHHHTCTTCCCEEECTTCCCCEECTTTTTTCEEEEEEEESCCSCTTHHHHH
T ss_pred             ChhhhcccCCCCEEeCcCCccceecHHHccchhccchhhhhcccCCCCceecCHHHhccCcceeEecccccccccchhhh
Confidence            68889999999999999998877666666655555    5666665543321                            


Q ss_pred             -----------------------------------------------------CcccccCCCCCceEeccCCcccCcCch
Q 037302          131 -----------------------------------------------------LPQEVGNLKNLLSLFLDNNNLTGPIPS  157 (408)
Q Consensus       131 -----------------------------------------------------~~~~~~~l~~L~~L~l~~~~~~~~~~~  157 (408)
                                                                           .+..+..+++|++++++++.+. ..+.
T Consensus       221 ~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~-~l~~  299 (570)
T 2z63_A          221 IQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIE-RVKD  299 (570)
T ss_dssp             HHTTTTCEEEEEEEEECCCCSSCEECCTTTTGGGGGSEEEEEEEEETTEEESCSTTTTGGGTTCSEEEEESCEEC-SCCB
T ss_pred             hcCccccceeeeccccccCchhhhhcchhhhccccccchhhhhhhcchhhhhhchhhhcCcCcccEEEecCccch-hhhh
Confidence                                                                 2233455688999999998887 4566


Q ss_pred             hhccCCCCCEEEcCCCcCCCCCCccccCCCCCCEEEecCcccccccCcccccccccCeEEccCCcCCCCC--CcccCCCC
Q 037302          158 TLYHLNQLSNLYLAYNNLVGPLPKEVGNMKNLDSLLLNRNSLTGPIPSTIGYLNLGGKLDLSHNRLDSPI--PPTIGNLT  235 (408)
Q Consensus       158 ~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~--~~~l~~~~  235 (408)
                      .+..+ +|+.|++++|.+. ..+.  ..+++|+.|++.+|.+....+.  ..++.|+.++++++.+....  +..+..++
T Consensus       300 ~~~~~-~L~~L~l~~n~~~-~l~~--~~l~~L~~L~l~~n~~~~~~~~--~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~  373 (570)
T 2z63_A          300 FSYNF-GWQHLELVNCKFG-QFPT--LKLKSLKRLTFTSNKGGNAFSE--VDLPSLEFLDLSRNGLSFKGCCSQSDFGTT  373 (570)
T ss_dssp             CCSCC-CCSEEEEESCBCS-SCCB--CBCSSCCEEEEESCBSCCBCCC--CBCTTCCEEECCSSCCBEEEEEEHHHHTCS
T ss_pred             hhccC-CccEEeeccCccc-ccCc--ccccccCEEeCcCCcccccccc--ccCCCCCEEeCcCCccCccccccccccccC
Confidence            67777 9999999999887 3333  5789999999999987654433  77899999999999876543  45677889


Q ss_pred             CccEEEccCCcccccCCccccCCCCCCEEeCCCCcccccCC-ccccCCCCCcEEeCCCCccccCCCcCCcCCCCCcEEEc
Q 037302          236 NLTSLDLSSNQLSGLLPREVGNLKYLDSLSLDGNNLIGSIP-PTIGYLTNLTSLNLGYNQLSSSIPPELMNCSQLQNLVL  314 (408)
Q Consensus       236 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l  314 (408)
                      +|++|++++|.+...... +..+++|+.|++++|.+....+ ..+..+++|++|++++|.+....+..+.++++|++|++
T Consensus       374 ~L~~L~l~~n~l~~~~~~-~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l  452 (570)
T 2z63_A          374 SLKYLDLSFNGVITMSSN-FLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKM  452 (570)
T ss_dssp             CCCEEECCSCSEEEEEEE-EETCTTCCEEECTTSEEESCTTSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEEC
T ss_pred             ccCEEECCCCcccccccc-ccccCCCCEEEccCCccccccchhhhhcCCCCCEEeCcCCcccccchhhhhcCCcCcEEEC
Confidence            999999999988855444 8899999999999999876544 56789999999999999999888888999999999999


Q ss_pred             CCCccC-CcCCcccccCCCccEEEcCCccccccCCcCCCCCCCccEEeCCCCccCCcCCcccc---CCCeEEccCCccCC
Q 037302          315 SHNTLS-GIVPPEIGNLTHLRQLDLSHNFINGTIPSQLGYIPNISAVDLSKNNLSGVVPASVR---IIPKLIVSENNLEL  390 (408)
Q Consensus       315 ~~~~~~-~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~---~l~~l~l~~n~~~~  390 (408)
                      ++|.+. +..+..+..+++|++|++++|++++..|..+..+++|+.|++++|++.+..|..+.   ++++|++++|++++
T Consensus       453 ~~n~l~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~~  532 (570)
T 2z63_A          453 AGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQKIWLHTNPWDC  532 (570)
T ss_dssp             TTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCC
T ss_pred             cCCcCccccchhhhhcccCCCEEECCCCccccCChhhhhcccCCCEEeCCCCcCCCCCHHHhhcccCCcEEEecCCcccC
Confidence            999987 46778899999999999999999988899999999999999999999999887665   56699999999998


Q ss_pred             CCCC
Q 037302          391 ENST  394 (408)
Q Consensus       391 ~~~~  394 (408)
                      ..|.
T Consensus       533 ~~~~  536 (570)
T 2z63_A          533 SCPR  536 (570)
T ss_dssp             CTTT
T ss_pred             CCcc
Confidence            8775

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=100.00  E-value=1.4e-40  Score=325.58  Aligned_cols=371  Identities=23%  Similarity=0.310  Sum_probs=265.4

Q ss_pred             CCCcEEEcCCCccccccchhhccCCCCcEEeCCCCcC-------------------------------------------
Q 037302           19 PNLESIIIPYTLLSGRIPSEIGALSKLEELALPYNSL-------------------------------------------   55 (408)
Q Consensus        19 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~-------------------------------------------   55 (408)
                      -+++.|+++++.+.|.+|..++.+++|++|++++|.+                                           
T Consensus        81 ~~V~~L~L~~~~l~g~lp~~l~~L~~L~~L~Ls~N~~~~~~~~~~~~~~~~~~~~~~~~~l~l~l~~~~l~~~~~~~~~~  160 (636)
T 4eco_A           81 GRVTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQKQKMRMHYQKTFVDYDPREDFSD  160 (636)
T ss_dssp             CCEEEEECTTSCCEEEECGGGGGCTTCCEEESCCGGGGGTCCSBSTTSBCTTCCHHHHHHHHTHHHHHHTCCCGGGGSCH
T ss_pred             CCEEEEEecCcccCCcCChHHhcCccceEEECcCCccccCCccccccccccCchHHHHHHHHhhHHHhhhccCchhhHHH
Confidence            4788888888888888888888888888888887743                                           


Q ss_pred             -----------------------------------CCCCcccccCCCCCcEEeCCCceeccc-----------------C
Q 037302           56 -----------------------------------TGTIPAEIGSLRNLVELDLSNNILNGS-----------------I   83 (408)
Q Consensus        56 -----------------------------------~~~~~~~~~~~~~L~~L~l~~~~~~~~-----------------~   83 (408)
                                                         ++ +|..++++++|++|++++|.+.+.                 .
T Consensus       161 ~~~~l~~~~l~~~~~~~~~~~~l~~l~l~~~~n~l~~-ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~i  239 (636)
T 4eco_A          161 LIKDCINSDPQQKSIKKSSRITLKDTQIGQLSNNITF-VSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYK  239 (636)
T ss_dssp             HHHHHHHHCTTSCCCCCCCCCCCCTTTTTCCSCEEEE-ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHT
T ss_pred             HHHHHhhcCccccccccccccchhhhhhccccCCCcc-CCHHHhcccCCCEEECcCCccccccccccccccccchhcccC
Confidence                                               12 455677888888888888887764                 7


Q ss_pred             ccccc--CCCCCceeecCCccccccCCCcCCCCCCCCEEEcCCCe-ecc-cCcccccCC------CCCceEeccCCcccC
Q 037302           84 PLEFG--NLKDLDALRLRGNKLDGLIPSSIGNLTNLTHLDLSLNQ-LSG-RLPQEVGNL------KNLLSLFLDNNNLTG  153 (408)
Q Consensus        84 ~~~~~--~l~~L~~L~l~~~~i~~~~~~~l~~l~~L~~L~l~~~~-~~~-~~~~~~~~l------~~L~~L~l~~~~~~~  153 (408)
                      |..+.  ++++|++|++++|.+....|..+.++++|++|++++|. +.+ ..+..+..+      ++|++|++++|.++ 
T Consensus       240 p~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~-  318 (636)
T 4eco_A          240 TEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLK-  318 (636)
T ss_dssp             TSCCCGGGCTTCCEEEEECCTTCSSCCTTTTTCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCS-
T ss_pred             chhhhhcccCCCCEEEecCCcCCccChHHHhcCCCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCC-
Confidence            77777  88888888888888777777888888888888888887 665 456656554      78888888888887 


Q ss_pred             cCch--hhccCCCCCEEEcCCCcCCCCCCccccCCCCCCEEEecCcccccccCcccccccc-cCeEEccCCcCCCCCCcc
Q 037302          154 PIPS--TLYHLNQLSNLYLAYNNLVGPLPKEVGNMKNLDSLLLNRNSLTGPIPSTIGYLNL-GGKLDLSHNRLDSPIPPT  230 (408)
Q Consensus       154 ~~~~--~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~-L~~l~l~~~~~~~~~~~~  230 (408)
                      .++.  .+..+++|+.|++++|.+....+ .+..+++|+.|++++|.+. ..+..+..++. |+.|++++|.+. ..+..
T Consensus       319 ~ip~~~~l~~l~~L~~L~L~~N~l~g~ip-~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~~L~~L~Ls~N~l~-~lp~~  395 (636)
T 4eco_A          319 TFPVETSLQKMKKLGMLECLYNQLEGKLP-AFGSEIKLASLNLAYNQIT-EIPANFCGFTEQVENLSFAHNKLK-YIPNI  395 (636)
T ss_dssp             SCCCHHHHTTCTTCCEEECCSCCCEEECC-CCEEEEEESEEECCSSEEE-ECCTTSEEECTTCCEEECCSSCCS-SCCSC
T ss_pred             ccCchhhhccCCCCCEEeCcCCcCccchh-hhCCCCCCCEEECCCCccc-cccHhhhhhcccCcEEEccCCcCc-ccchh
Confidence            5665  77888888888888887764455 6777788888888888776 55556777777 888888887776 44555


Q ss_pred             cCCCC--CccEEEccCCcccccCCcccc-------CCCCCCEEeCCCCcccccCCccccCCCCCcEEeCCCCccccCCCc
Q 037302          231 IGNLT--NLTSLDLSSNQLSGLLPREVG-------NLKYLDSLSLDGNNLIGSIPPTIGYLTNLTSLNLGYNQLSSSIPP  301 (408)
Q Consensus       231 l~~~~--~L~~L~l~~~~~~~~~~~~~~-------~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~  301 (408)
                      +...+  +|+.|++++|.+.+..+..+.       .+++|+.|++++|.+.......+..+++|++|++++|.++.....
T Consensus       396 ~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~~~~l~~L~~L~Ls~N~l~~i~~~  475 (636)
T 4eco_A          396 FDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLTEIPKN  475 (636)
T ss_dssp             CCTTCSSCEEEEECCSSCTTTTTTCSSCTTCSSCCCCCCEEEEECCSSCCCSCCTHHHHTTCCCSEEECCSSCCSBCCSS
T ss_pred             hhhcccCccCEEECcCCcCCCcchhhhcccccccccCCCCCEEECcCCccCcCCHHHHccCCCCCEEECCCCCCCCcCHH
Confidence            55433  777888877777665555555       556777777777777644444455677777777777777743333


Q ss_pred             CCcCC-------CCCcEEEcCCCccCCcCCcccc--cCCCccEEEcCCccccccCCcCCCCCCCccEEeC------CCCc
Q 037302          302 ELMNC-------SQLQNLVLSHNTLSGIVPPEIG--NLTHLRQLDLSHNFINGTIPSQLGYIPNISAVDL------SKNN  366 (408)
Q Consensus       302 ~~~~~-------~~L~~L~l~~~~~~~~~~~~~~--~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l------~~~~  366 (408)
                      .+...       ++|++|++++|+++ ..+..+.  .+++|++|++++|++++ +|..+..+++|+.|++      ++|+
T Consensus       476 ~~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~-ip~~~~~l~~L~~L~Ls~N~~ls~N~  553 (636)
T 4eco_A          476 SLKDENENFKNTYLLTSIDLRFNKLT-KLSDDFRATTLPYLVGIDLSYNSFSK-FPTQPLNSSTLKGFGIRNQRDAQGNR  553 (636)
T ss_dssp             SSEETTEECTTGGGCCEEECCSSCCC-BCCGGGSTTTCTTCCEEECCSSCCSS-CCCGGGGCSSCCEEECCSCBCTTCCB
T ss_pred             HhccccccccccCCccEEECcCCcCC-ccChhhhhccCCCcCEEECCCCCCCC-cChhhhcCCCCCEEECCCCcccccCc
Confidence            33322       27777777777776 4455554  67777777777777775 6666667777777777      4566


Q ss_pred             cCCcCCcccc---CCCeEEccCCccCCCCCCCcC
Q 037302          367 LSGVVPASVR---IIPKLIVSENNLELENSTSSE  397 (408)
Q Consensus       367 l~~~~~~~~~---~l~~l~l~~n~~~~~~~~~~~  397 (408)
                      +.+..|..+.   ++++|++++|++ +.+|..+.
T Consensus       554 l~~~~p~~l~~l~~L~~L~Ls~N~l-~~ip~~~~  586 (636)
T 4eco_A          554 TLREWPEGITLCPSLTQLQIGSNDI-RKVNEKIT  586 (636)
T ss_dssp             CCCCCCTTGGGCSSCCEEECCSSCC-CBCCSCCC
T ss_pred             ccccChHHHhcCCCCCEEECCCCcC-CccCHhHh
Confidence            6666666554   344777777777 67776654

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=100.00  E-value=5.4e-40  Score=321.42  Aligned_cols=350  Identities=21%  Similarity=0.295  Sum_probs=301.7

Q ss_pred             cchhhccCCCCcEEeCCCCcCCCC-----------------Cccccc--CCCCCcEEeCCCceecccCcccccCCCCCce
Q 037302           35 IPSEIGALSKLEELALPYNSLTGT-----------------IPAEIG--SLRNLVELDLSNNILNGSIPLEFGNLKDLDA   95 (408)
Q Consensus        35 ~~~~~~~~~~L~~L~l~~~~~~~~-----------------~~~~~~--~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~   95 (408)
                      +|..+..+++|++|++++|.+++.                 .|..++  ++++|++|++++|.+.+..|..+.++++|++
T Consensus       198 ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~  277 (636)
T 4eco_A          198 VSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQL  277 (636)
T ss_dssp             ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTTCSSCCE
T ss_pred             CCHHHhcccCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccChHHHhcCCCCCE
Confidence            677799999999999999999864                 788888  9999999999999988889999999999999


Q ss_pred             eecCCcc-ccc-cCCCcCCCC------CCCCEEEcCCCeecccCcc--cccCCCCCceEeccCCcccCcCchhhccCCCC
Q 037302           96 LRLRGNK-LDG-LIPSSIGNL------TNLTHLDLSLNQLSGRLPQ--EVGNLKNLLSLFLDNNNLTGPIPSTLYHLNQL  165 (408)
Q Consensus        96 L~l~~~~-i~~-~~~~~l~~l------~~L~~L~l~~~~~~~~~~~--~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L  165 (408)
                      |++++|. ++. ..|..+..+      ++|++|++++|.+. ..+.  .+..+++|++|++++|.+.+..+ .+..+++|
T Consensus       278 L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~-~ip~~~~l~~l~~L~~L~L~~N~l~g~ip-~~~~l~~L  355 (636)
T 4eco_A          278 INVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLK-TFPVETSLQKMKKLGMLECLYNQLEGKLP-AFGSEIKL  355 (636)
T ss_dssp             EECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCS-SCCCHHHHTTCTTCCEEECCSCCCEEECC-CCEEEEEE
T ss_pred             EECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCC-ccCchhhhccCCCCCEEeCcCCcCccchh-hhCCCCCC
Confidence            9999998 776 556666555      99999999999998 6777  89999999999999999886666 88889999


Q ss_pred             CEEEcCCCcCCCCCCccccCCCC-CCEEEecCcccccccCccccccc--ccCeEEccCCcCCCCCCcccC-------CCC
Q 037302          166 SNLYLAYNNLVGPLPKEVGNMKN-LDSLLLNRNSLTGPIPSTIGYLN--LGGKLDLSHNRLDSPIPPTIG-------NLT  235 (408)
Q Consensus       166 ~~L~l~~~~~~~~~~~~~~~~~~-L~~L~l~~~~~~~~~~~~~~~~~--~L~~l~l~~~~~~~~~~~~l~-------~~~  235 (408)
                      +.|++++|.+. ..+..+..+++ |+.|++++|.+. ..+..+...+  .|+.+++++|.+....+..+.       .++
T Consensus       356 ~~L~L~~N~l~-~lp~~l~~l~~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~  433 (636)
T 4eco_A          356 ASLNLAYNQIT-EIPANFCGFTEQVENLSFAHNKLK-YIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGI  433 (636)
T ss_dssp             SEEECCSSEEE-ECCTTSEEECTTCCEEECCSSCCS-SCCSCCCTTCSSCEEEEECCSSCTTTTTTCSSCTTCSSCCCCC
T ss_pred             CEEECCCCccc-cccHhhhhhcccCcEEEccCCcCc-ccchhhhhcccCccCEEECcCCcCCCcchhhhcccccccccCC
Confidence            99999999987 56667888999 999999999988 5566666544  899999999999887777777       778


Q ss_pred             CccEEEccCCcccccCCccccCCCCCCEEeCCCCcccccCCccccCC-------CCCcEEeCCCCccccCCCcCCc--CC
Q 037302          236 NLTSLDLSSNQLSGLLPREVGNLKYLDSLSLDGNNLIGSIPPTIGYL-------TNLTSLNLGYNQLSSSIPPELM--NC  306 (408)
Q Consensus       236 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~-------~~L~~L~l~~~~~~~~~~~~~~--~~  306 (408)
                      +|+.|++++|.+.......+..+++|+.|++++|.+.......+...       ++|++|++++|.++ ..+..+.  .+
T Consensus       434 ~L~~L~Ls~N~l~~lp~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~~~l  512 (636)
T 4eco_A          434 NVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLTEIPKNSLKDENENFKNTYLLTSIDLRFNKLT-KLSDDFRATTL  512 (636)
T ss_dssp             CEEEEECCSSCCCSCCTHHHHTTCCCSEEECCSSCCSBCCSSSSEETTEECTTGGGCCEEECCSSCCC-BCCGGGSTTTC
T ss_pred             CCCEEECcCCccCcCCHHHHccCCCCCEEECCCCCCCCcCHHHhccccccccccCCccEEECcCCcCC-ccChhhhhccC
Confidence            99999999999986555666778999999999999985444444433       39999999999999 5666665  89


Q ss_pred             CCCcEEEcCCCccCCcCCcccccCCCccEEEc------CCccccccCCcCCCCCCCccEEeCCCCccCCcCCccccCCCe
Q 037302          307 SQLQNLVLSHNTLSGIVPPEIGNLTHLRQLDL------SHNFINGTIPSQLGYIPNISAVDLSKNNLSGVVPASVRIIPK  380 (408)
Q Consensus       307 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l------~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~  380 (408)
                      ++|++|++++|++++ .+..+..+++|++|++      ++|.+.+.+|..+..+++|+.|++++|++..+......++++
T Consensus       513 ~~L~~L~Ls~N~l~~-ip~~~~~l~~L~~L~Ls~N~~ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~ip~~~~~~L~~  591 (636)
T 4eco_A          513 PYLVGIDLSYNSFSK-FPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSNDIRKVNEKITPNISV  591 (636)
T ss_dssp             TTCCEEECCSSCCSS-CCCGGGGCSSCCEEECCSCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCCCBCCSCCCTTCCE
T ss_pred             CCcCEEECCCCCCCC-cChhhhcCCCCCEEECCCCcccccCcccccChHHHhcCCCCCEEECCCCcCCccCHhHhCcCCE
Confidence            999999999999996 7888889999999999      567788889999999999999999999996554455568999


Q ss_pred             EEccCCccCC
Q 037302          381 LIVSENNLEL  390 (408)
Q Consensus       381 l~l~~n~~~~  390 (408)
                      |++++|++..
T Consensus       592 L~Ls~N~l~~  601 (636)
T 4eco_A          592 LDIKDNPNIS  601 (636)
T ss_dssp             EECCSCTTCE
T ss_pred             EECcCCCCcc
Confidence            9999998864

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=100.00  E-value=4.1e-39  Score=325.32  Aligned_cols=385  Identities=24%  Similarity=0.236  Sum_probs=317.2

Q ss_pred             CCcccccccccCCCCCCcEEEcCCCccccccchhhccCCCCcEEeCCCCcCCCCCccc--ccCCCCCcEEeCCCceeccc
Q 037302            5 GNAAELSQLNFTCFPNLESIIIPYTLLSGRIPSEIGALSKLEELALPYNSLTGTIPAE--IGSLRNLVELDLSNNILNGS   82 (408)
Q Consensus         5 ~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~--~~~~~~L~~L~l~~~~~~~~   82 (408)
                      +.++.++..+|.++++|++|++++|.+.+..|..+..+++|++|++++|.+.+..+..  +..+++|++|++++|.+.+.
T Consensus        59 ~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~  138 (844)
T 3j0a_A           59 YTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSL  138 (844)
T ss_dssp             CCCCEECTTTTSSCTTCCEEECTTCCCCEECTTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCC
T ss_pred             CCccccCHHHhcCCCCCCEEECCCCcCcccCHhHccCCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCccccc
Confidence            3577888899999999999999999999888899999999999999999987644443  88999999999999998755


Q ss_pred             Cc-ccccCCCCCceeecCCccccccCCCcCCC--------------------------CC------CCCEEEcCCCeecc
Q 037302           83 IP-LEFGNLKDLDALRLRGNKLDGLIPSSIGN--------------------------LT------NLTHLDLSLNQLSG  129 (408)
Q Consensus        83 ~~-~~~~~l~~L~~L~l~~~~i~~~~~~~l~~--------------------------l~------~L~~L~l~~~~~~~  129 (408)
                      .+ ..|.++++|++|++++|.+....+..+..                          ++      .|++|++++|.+..
T Consensus       139 ~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~l~~l~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~  218 (844)
T 3j0a_A          139 YLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTV  218 (844)
T ss_dssp             CCCGGGGTCSSCCEEEEESSCCCCCCSGGGHHHHHCSSCCCEECCSBSCCCCCCCCCSSSCTTTTCCBSEEBCSSCCSST
T ss_pred             ccchhHhhCCCCCEEECCCCcCCeeCHHHcccccCCccceEECCCCccccccccchhhcCCccccCceeEEecCCCcCch
Confidence            43 56889999999999988776544433322                          22      27788887775432


Q ss_pred             cCcccc------------------------------------cC--CCCCceEeccCCcccCcCchhhccCCCCCEEEcC
Q 037302          130 RLPQEV------------------------------------GN--LKNLLSLFLDNNNLTGPIPSTLYHLNQLSNLYLA  171 (408)
Q Consensus       130 ~~~~~~------------------------------------~~--l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~  171 (408)
                      ..+..+                                    ..  .++|+.|++++|.+....+..+..+++|+.|+++
T Consensus       219 ~~~~~~~~~l~~~~l~~L~l~~~~~~~~~~~~~l~~~~~~~f~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~  298 (844)
T 3j0a_A          219 DITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLA  298 (844)
T ss_dssp             TTTSGGGGTSCSCCBSEEECCSSCCBCSSSCSSSTTGGGTTTTTTTTSCCCEEECTTCCCCEECSCCSSSCCCCCEEEEE
T ss_pred             hHHHHHHhhcCcccccceecccccccccccccccCCCChhhhhccccCCccEEECCCCcccccChhhhhcCCCCCEEECC
Confidence            222111                                    11  2689999999999887777888999999999999


Q ss_pred             CCcCCCCCCccccCCCCCCEEEecCcccccccCcccccccccCeEEccCCcCCCCCCcccCCCCCccEEEccCCcccccC
Q 037302          172 YNNLVGPLPKEVGNMKNLDSLLLNRNSLTGPIPSTIGYLNLGGKLDLSHNRLDSPIPPTIGNLTNLTSLDLSSNQLSGLL  251 (408)
Q Consensus       172 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~  251 (408)
                      +|.+....+..+..+++|+.|++++|.+.+..+..+..++.|+.+++++|.+....+..+..+++|+.|++++|.+....
T Consensus       299 ~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~i~  378 (844)
T 3j0a_A          299 YNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALTTIH  378 (844)
T ss_dssp             SCCCCEECTTTTTTCSSCCEEEEESCCCSCCCSCSCSSCTTCCEEECCSCCCCCCCSSCSCSCCCCCEEEEETCCSCCCS
T ss_pred             CCcCCCCChHHhcCCCCCCEEECCCCCCCccCHHHhcCCCCCCEEECCCCCCCccChhhhcCCCCCCEEECCCCCCCccc
Confidence            99998777788999999999999999998777888999999999999999998887788889999999999998765311


Q ss_pred             C----------------------------------------ccccCCCCCCEEeCCCCcccccCC-ccccCCCCCcEEeC
Q 037302          252 P----------------------------------------REVGNLKYLDSLSLDGNNLIGSIP-PTIGYLTNLTSLNL  290 (408)
Q Consensus       252 ~----------------------------------------~~~~~~~~L~~L~l~~~~~~~~~~-~~~~~~~~L~~L~l  290 (408)
                      .                                        ..+..+++|+.|++++|.+..... ..+..+++|++|++
T Consensus       379 ~~~~L~~L~l~~N~l~~l~~~~~~l~~L~ls~N~l~~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~L~~L~L  458 (844)
T 3j0a_A          379 FIPSIPDIFLSGNKLVTLPKINLTANLIHLSENRLENLDILYFLLRVPHLQILILNQNRFSSCSGDQTPSENPSLEQLFL  458 (844)
T ss_dssp             SCCSCSEEEEESCCCCCCCCCCTTCCEEECCSCCCCSSTTHHHHTTCTTCCEEEEESCCCCCCCSSSSSCSCTTCCBCEE
T ss_pred             CCCCcchhccCCCCcccccccccccceeecccCccccCchhhhhhcCCccceeeCCCCcccccccccccccCCccccccC
Confidence            0                                        112367889999999998875432 24556899999999


Q ss_pred             CCCcccc-----CCCcCCcCCCCCcEEEcCCCccCCcCCcccccCCCccEEEcCCccccccCCcCCCCCCCccEEeCCCC
Q 037302          291 GYNQLSS-----SIPPELMNCSQLQNLVLSHNTLSGIVPPEIGNLTHLRQLDLSHNFINGTIPSQLGYIPNISAVDLSKN  365 (408)
Q Consensus       291 ~~~~~~~-----~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~  365 (408)
                      ++|.+..     ..+..+.++++|++|++++|.+++..+..+..+++|+.|++++|++++..+..+.  ++|+.|++++|
T Consensus       459 s~N~l~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~--~~L~~L~Ls~N  536 (844)
T 3j0a_A          459 GENMLQLAWETELCWDVFEGLSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRLTVLSHNDLP--ANLEILDISRN  536 (844)
T ss_dssp             ESCCCSSSCCSCCCSSCSSCBCCEECCCCCHHHHTTCCTTSSSSCCSCSEEEEESCCCSSCCCCCCC--SCCCEEEEEEE
T ss_pred             CCCccccccccccchhhhcCcccccEEECCCCcccccChhHccchhhhheeECCCCCCCccChhhhh--ccccEEECCCC
Confidence            9999863     3345678899999999999999988888899999999999999999977666665  89999999999


Q ss_pred             ccCCcCCccccCCCeEEccCCccCCC
Q 037302          366 NLSGVVPASVRIIPKLIVSENNLELE  391 (408)
Q Consensus       366 ~l~~~~~~~~~~l~~l~l~~n~~~~~  391 (408)
                      ++.+..|..+.+++++++++|++.+.
T Consensus       537 ~l~~~~~~~~~~L~~l~l~~Np~~C~  562 (844)
T 3j0a_A          537 QLLAPNPDVFVSLSVLDITHNKFICE  562 (844)
T ss_dssp             CCCCCCSCCCSSCCEEEEEEECCCCS
T ss_pred             cCCCCChhHhCCcCEEEecCCCcccc
Confidence            99999999999999999999998763

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=100.00  E-value=5.4e-39  Score=310.61  Aligned_cols=391  Identities=20%  Similarity=0.216  Sum_probs=222.4

Q ss_pred             CcccccccccCCCCCCcEEEcCCCccccccchhhccCCCCcEEeCCCCcCCCCCcccccCCCCCcEEeCCCceecc-cCc
Q 037302            6 NAAELSQLNFTCFPNLESIIIPYTLLSGRIPSEIGALSKLEELALPYNSLTGTIPAEIGSLRNLVELDLSNNILNG-SIP   84 (408)
Q Consensus         6 ~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~-~~~   84 (408)
                      .++.+...+|.++++|++|+++++.+.+..+..+..+++|++|++++|.+.+..+..|.++++|++|++++|.+.. ..+
T Consensus        37 ~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~  116 (549)
T 2z81_A           37 KITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVT  116 (549)
T ss_dssp             CCCEECSSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCSCCHHHHTTCTTCCEEECTTCCCSSSCSS
T ss_pred             ccCccChhhhhcCCcccEEECCCCCcCccChhhccccccCCEEECCCCccCccCHHHhccCCCCcEEECCCCcccccchh
Confidence            3444444455555555555555555554444445555555555555555544444445555555555555555443 123


Q ss_pred             ccccCCCCCceeecCCcc-ccccCCCcCCCCCCCCEEEcCCCeecccCcccccCCCCCceEeccCCcccCcCchhhccCC
Q 037302           85 LEFGNLKDLDALRLRGNK-LDGLIPSSIGNLTNLTHLDLSLNQLSGRLPQEVGNLKNLLSLFLDNNNLTGPIPSTLYHLN  163 (408)
Q Consensus        85 ~~~~~l~~L~~L~l~~~~-i~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~  163 (408)
                      ..+.++++|++|++++|. +..+.+..+.++++|++|++++|.+....+..+..+++|++|+++.+.+.......+..++
T Consensus       117 ~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~  196 (549)
T 2z81_A          117 SLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESAFLLEIFADILS  196 (549)
T ss_dssp             CSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSBSTTHHHHHHHSTT
T ss_pred             hhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCcccccChhhhhccccCceEecccCcccccchhhHhhcc
Confidence            344555555555555554 3333334455555555555555555444444455555555555555444322111223466


Q ss_pred             CCCEEEcCCCcCCCCC---CccccCCCCCCEEEecCcccccccC----c-------------------------------
Q 037302          164 QLSNLYLAYNNLVGPL---PKEVGNMKNLDSLLLNRNSLTGPIP----S-------------------------------  205 (408)
Q Consensus       164 ~L~~L~l~~~~~~~~~---~~~~~~~~~L~~L~l~~~~~~~~~~----~-------------------------------  205 (408)
                      +|+.|++++|.+....   ......+++|+.|++.++.+.+...    .                               
T Consensus       197 ~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~  276 (549)
T 2z81_A          197 SVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEFDDCTLNGLGDFNPSESDV  276 (549)
T ss_dssp             TBSEEEEESCBCTTCCCCCCSSCCCCCCCCEEEEESCEEEHHHHHHHHGGGGGCTTCCEEEEESCEEECCSCCCCCTTTC
T ss_pred             cccEEEccCCccccccccccchhhhhhcccceeccccccchhHHHHHHHHhhhhccccccccccccccccccccccchhh
Confidence            7777777776654321   0111223444444444433221000    0                               


Q ss_pred             ----------------------------ccccccccCeEEccCCcCCCCCCccc-CCCCCccEEEccCCcccccC---Cc
Q 037302          206 ----------------------------TIGYLNLGGKLDLSHNRLDSPIPPTI-GNLTNLTSLDLSSNQLSGLL---PR  253 (408)
Q Consensus       206 ----------------------------~~~~~~~L~~l~l~~~~~~~~~~~~l-~~~~~L~~L~l~~~~~~~~~---~~  253 (408)
                                                  .+...+.++.++++++.+.. .+..+ ..+++|++|++++|.+.+..   ..
T Consensus       277 ~~~l~~L~~L~l~~~~i~~~~~~~~l~~~~~~~~~L~~L~l~~n~l~~-ip~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~  355 (549)
T 2z81_A          277 VSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVFL-VPCSFSQHLKSLEFLDLSENLMVEEYLKNSA  355 (549)
T ss_dssp             CCCCTTCCEEEEESCBCSCGGGSCCCCHHHHHSTTCCEEEEESSCCCC-CCHHHHHHCTTCCEEECCSSCCCHHHHHHHT
T ss_pred             hhhhcccccccccccccchhhhcccchhhhhhcccceEEEeccCcccc-CCHHHHhcCccccEEEccCCccccccccchh
Confidence                                        01112345555665555543 23222 45778888888888776433   22


Q ss_pred             cccCCCCCCEEeCCCCcccccCC--ccccCCCCCcEEeCCCCccccCCCcCCcCCCCCcEEEcCCCccCCcCCcccccCC
Q 037302          254 EVGNLKYLDSLSLDGNNLIGSIP--PTIGYLTNLTSLNLGYNQLSSSIPPELMNCSQLQNLVLSHNTLSGIVPPEIGNLT  331 (408)
Q Consensus       254 ~~~~~~~L~~L~l~~~~~~~~~~--~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~  331 (408)
                      .++.+++|+.|++++|.+.....  ..+..+++|++|++++|.++ ..+..+..+++|++|++++|+++... ..+  .+
T Consensus       356 ~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~~~~L~~L~Ls~N~l~~l~-~~~--~~  431 (549)
T 2z81_A          356 CKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFH-PMPDSCQWPEKMRFLNLSSTGIRVVK-TCI--PQ  431 (549)
T ss_dssp             CTTSSTTCCEEECTTSCCCCHHHHHHHGGGCTTCCEEECTTCCCC-CCCSCCCCCTTCCEEECTTSCCSCCC-TTS--CT
T ss_pred             hhhccccCcEEEccCCcccccccchhhhhcCCCCCEEECCCCCCc-cCChhhcccccccEEECCCCCccccc-chh--cC
Confidence            35667788888888887764321  34667788888888888887 55666777788888888888876332 222  25


Q ss_pred             CccEEEcCCccccccCCcCCCCCCCccEEeCCCCccCCcCC-ccccCCCeEEccCCccCCCCCCCcCCCCCCCCC
Q 037302          332 HLRQLDLSHNFINGTIPSQLGYIPNISAVDLSKNNLSGVVP-ASVRIIPKLIVSENNLELENSTSSENAPPPQAK  405 (408)
Q Consensus       332 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~-~~~~~l~~l~l~~n~~~~~~~~~~~~~~~~~~~  405 (408)
                      +|+.|++++|++++.    ...+++|+.|++++|+++.+.+ ..+.++++|++++|++++.+|..+.+++.|+.+
T Consensus       432 ~L~~L~Ls~N~l~~~----~~~l~~L~~L~Ls~N~l~~ip~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L  502 (549)
T 2z81_A          432 TLEVLDVSNNNLDSF----SLFLPRLQELYISRNKLKTLPDASLFPVLLVMKISRNQLKSVPDGIFDRLTSLQKI  502 (549)
T ss_dssp             TCSEEECCSSCCSCC----CCCCTTCCEEECCSSCCSSCCCGGGCTTCCEEECCSSCCCCCCTTGGGGCTTCCEE
T ss_pred             CceEEECCCCChhhh----cccCChhcEEECCCCccCcCCCcccCccCCEEecCCCccCCcCHHHHhcCcccCEE
Confidence            778888888877743    2467888888888888885543 234567788888888888888888888877654

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}

Probab=100.00  E-value=6.6e-39  Score=319.14  Aligned_cols=331  Identities=21%  Similarity=0.249  Sum_probs=197.8

Q ss_pred             CcccccCCCCCcEEeCCCceecc-----------------cCccccc--CCCCCceeecCCccccccCCCcCCCCCCCCE
Q 037302           59 IPAEIGSLRNLVELDLSNNILNG-----------------SIPLEFG--NLKDLDALRLRGNKLDGLIPSSIGNLTNLTH  119 (408)
Q Consensus        59 ~~~~~~~~~~L~~L~l~~~~~~~-----------------~~~~~~~--~l~~L~~L~l~~~~i~~~~~~~l~~l~~L~~  119 (408)
                      +|..++++++|++|++++|.+.+                 ..|..+.  ++++|++|++++|.+....|..+.++++|++
T Consensus       440 IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~  519 (876)
T 4ecn_A          440 ISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQS  519 (876)
T ss_dssp             ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGCSSCCE
T ss_pred             hhHHHhcCCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCccChHHHhCCCCCCE
Confidence            44556677777777777777765                 2566655  7777777777777766666677777777777


Q ss_pred             EEcCCCe-ecc-cCcccccC-------CCCCceEeccCCcccCcCch--hhccCCCCCEEEcCCCcCCCCCCccccCCCC
Q 037302          120 LDLSLNQ-LSG-RLPQEVGN-------LKNLLSLFLDNNNLTGPIPS--TLYHLNQLSNLYLAYNNLVGPLPKEVGNMKN  188 (408)
Q Consensus       120 L~l~~~~-~~~-~~~~~~~~-------l~~L~~L~l~~~~~~~~~~~--~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~  188 (408)
                      |++++|. +.+ ..|..+..       +++|+.|++++|.+. .++.  .+..+++|+.|++++|.+. .++ .+..+++
T Consensus       520 L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~l~~L~~L~~L~Ls~N~l~-~lp-~~~~L~~  596 (876)
T 4ecn_A          520 LNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLE-EFPASASLQKMVKLGLLDCVHNKVR-HLE-AFGTNVK  596 (876)
T ss_dssp             EECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCC-BCCCHHHHTTCTTCCEEECTTSCCC-BCC-CCCTTSE
T ss_pred             EECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCC-ccCChhhhhcCCCCCEEECCCCCcc-cch-hhcCCCc
Confidence            7777776 554 34443333       347777777777776 4555  6777777777777777766 444 5677777


Q ss_pred             CCEEEecCcccccccCcccccccc-cCeEEccCCcCCCCCCcccCCCC--CccEEEccCCcccccCCcc---cc--CCCC
Q 037302          189 LDSLLLNRNSLTGPIPSTIGYLNL-GGKLDLSHNRLDSPIPPTIGNLT--NLTSLDLSSNQLSGLLPRE---VG--NLKY  260 (408)
Q Consensus       189 L~~L~l~~~~~~~~~~~~~~~~~~-L~~l~l~~~~~~~~~~~~l~~~~--~L~~L~l~~~~~~~~~~~~---~~--~~~~  260 (408)
                      |+.|++++|.+. .++..+..++. |+.|++++|.+. ..+..+...+  +|+.|++++|.+.+..+..   +.  ..++
T Consensus       597 L~~L~Ls~N~l~-~lp~~l~~l~~~L~~L~Ls~N~L~-~lp~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~  674 (876)
T 4ecn_A          597 LTDLKLDYNQIE-EIPEDFCAFTDQVEGLGFSHNKLK-YIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGIN  674 (876)
T ss_dssp             ESEEECCSSCCS-CCCTTSCEECTTCCEEECCSSCCC-SCCSCCCTTCSSCEEEEECCSSCTTTTSSSCSSCTTTCCCCC
T ss_pred             ceEEECcCCccc-cchHHHhhccccCCEEECcCCCCC-cCchhhhccccCCCCEEECcCCcCCCccccchhhhccccCCC
Confidence            777777777766 45555666666 777777777666 3444444433  3666666666665332211   11  2235


Q ss_pred             CCEEeCCCCcccccCCccccCCCCCcEEeCCCCccccCCCcCCcC-------CCCCcEEEcCCCccCCcCCcccc--cCC
Q 037302          261 LDSLSLDGNNLIGSIPPTIGYLTNLTSLNLGYNQLSSSIPPELMN-------CSQLQNLVLSHNTLSGIVPPEIG--NLT  331 (408)
Q Consensus       261 L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~-------~~~L~~L~l~~~~~~~~~~~~~~--~~~  331 (408)
                      |+.|++++|.+.......+..+++|+.|++++|.+.......+..       +++|+.|++++|++. .++..+.  .++
T Consensus       675 L~~L~Ls~N~L~~lp~~~~~~l~~L~~L~Ls~N~L~~ip~~~~~~~~~~l~nl~~L~~L~Ls~N~L~-~lp~~l~~~~l~  753 (876)
T 4ecn_A          675 ASTVTLSYNEIQKFPTELFATGSPISTIILSNNLMTSIPENSLKPKDGNYKNTYLLTTIDLRFNKLT-SLSDDFRATTLP  753 (876)
T ss_dssp             EEEEECCSSCCCSCCHHHHHTTCCCSEEECCSCCCSCCCTTSSSCTTSCCTTGGGCCEEECCSSCCC-CCCGGGSTTTCT
T ss_pred             cCEEEccCCcCCccCHHHHccCCCCCEEECCCCcCCccChHHhccccccccccCCccEEECCCCCCc-cchHHhhhccCC
Confidence            666666666655333333345566666666666655322222221       225666666666665 3344443  556


Q ss_pred             CccEEEcCCccccccCCcCCCCCCCccEEeCCC------CccCCcCCcccc---CCCeEEccCCccCCCCCCCcC
Q 037302          332 HLRQLDLSHNFINGTIPSQLGYIPNISAVDLSK------NNLSGVVPASVR---IIPKLIVSENNLELENSTSSE  397 (408)
Q Consensus       332 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~------~~l~~~~~~~~~---~l~~l~l~~n~~~~~~~~~~~  397 (408)
                      +|+.|++++|.+++ +|..+..+++|+.|++++      |++.+..|..+.   +|++|++++|++ +.+|..+.
T Consensus       754 ~L~~L~Ls~N~L~~-lp~~l~~L~~L~~L~Ls~N~~ls~N~l~~~ip~~l~~L~~L~~L~Ls~N~L-~~Ip~~l~  826 (876)
T 4ecn_A          754 YLSNMDVSYNCFSS-FPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGSNDI-RKVDEKLT  826 (876)
T ss_dssp             TCCEEECCSSCCSS-CCCGGGGCTTCCEEECCCCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCC-CBCCSCCC
T ss_pred             CcCEEEeCCCCCCc-cchhhhcCCCCCEEECCCCCCcccccccccChHHHhcCCCCCEEECCCCCC-CccCHhhc
Confidence            66666666666664 455555666666666644      555555554443   344666666666 56665543

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=100.00  E-value=2.6e-38  Score=298.78  Aligned_cols=354  Identities=20%  Similarity=0.168  Sum_probs=201.1

Q ss_pred             CCCcEEEcCCCccccccchhhccCCCCcEEeCCCCcCC-CCCcccccCCCCCcEEeCCCceecccCcccccCCCCCceee
Q 037302           19 PNLESIIIPYTLLSGRIPSEIGALSKLEELALPYNSLT-GTIPAEIGSLRNLVELDLSNNILNGSIPLEFGNLKDLDALR   97 (408)
Q Consensus        19 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~-~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~   97 (408)
                      ++|++|+++++.+.+..+..+..+++|++|++++|.+. ...+..|.++++|++|++++|.+....|..|.++++|++|+
T Consensus        30 ~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~  109 (455)
T 3v47_A           30 AHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQLETGAFNGLANLEVLT  109 (455)
T ss_dssp             TTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTCTTCEECTTTTTTCTTCCEEE
T ss_pred             CccCEEEecCCccCcCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCCCCccCccChhhccCcccCCEEe
Confidence            56777777777776666666777777777777777664 23345567777777777777776655666677777777777


Q ss_pred             cCCccccccC--CCcCCCCCCCCEEEcCCCeecccCccc-ccCCCCCceEeccCCcccCcCchhhccC--CCCCEEEcCC
Q 037302           98 LRGNKLDGLI--PSSIGNLTNLTHLDLSLNQLSGRLPQE-VGNLKNLLSLFLDNNNLTGPIPSTLYHL--NQLSNLYLAY  172 (408)
Q Consensus        98 l~~~~i~~~~--~~~l~~l~~L~~L~l~~~~~~~~~~~~-~~~l~~L~~L~l~~~~~~~~~~~~~~~~--~~L~~L~l~~  172 (408)
                      +++|.+....  ...+..+++|++|++++|.+....+.. +..+++|++|++++|.+....+..+..+  .+++.+++++
T Consensus       110 L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~~~L~~L~l~~  189 (455)
T 3v47_A          110 LTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSS  189 (455)
T ss_dssp             CTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBSCCCTTTSGGGTTCEEEEEECTT
T ss_pred             CCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCcccccChhhhhcccccccccccccc
Confidence            7777665422  233666777777777777776554444 5667777777777777665555555543  5666777777


Q ss_pred             CcCCCCCCcc--------ccCCCCCCEEEecCcccccccCcccccc---cccCeEEccCCcCCCCC----------Cccc
Q 037302          173 NNLVGPLPKE--------VGNMKNLDSLLLNRNSLTGPIPSTIGYL---NLGGKLDLSHNRLDSPI----------PPTI  231 (408)
Q Consensus       173 ~~~~~~~~~~--------~~~~~~L~~L~l~~~~~~~~~~~~~~~~---~~L~~l~l~~~~~~~~~----------~~~l  231 (408)
                      +.+.......        +..+++|++|++++|.+.+..+..+...   +.++.++++++......          ...+
T Consensus       190 n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~  269 (455)
T 3v47_A          190 ITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTF  269 (455)
T ss_dssp             CBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEECTTCTTTSCCTTCCSSCCCCTTTT
T ss_pred             CcccccchhhccccccccccccceeeeEecCCCcccccchhhhhccccccceeeEeeccccccccccchhhhccCccccc
Confidence            6665432221        2244667777777766654433333322   56666666655332110          0011


Q ss_pred             C--CCCCccEEEccCCcccccCCccccCCCCCCEEeCCCCcccccCCccccCCCCCcEEeCCCCccccCCCcCCcCCCCC
Q 037302          232 G--NLTNLTSLDLSSNQLSGLLPREVGNLKYLDSLSLDGNNLIGSIPPTIGYLTNLTSLNLGYNQLSSSIPPELMNCSQL  309 (408)
Q Consensus       232 ~--~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L  309 (408)
                      .  ..++|+.|++++|.+.+..+..+..+++|++|++++|.+....+..+..+++|++|++++|.+++..+..+.++++|
T Consensus       270 ~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L  349 (455)
T 3v47_A          270 KGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKL  349 (455)
T ss_dssp             GGGTTSCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGGTTCTTC
T ss_pred             ccccccCceEEEecCccccccchhhcccCCCCCEEECCCCcccccChhHhcCcccCCEEECCCCccCCcChhHhcCcccC
Confidence            1  11345555555555544444445555555555555555544444444555555555555555554444444555555


Q ss_pred             cEEEcCCCccCCcCCcccccCCCccEEEcCCccccccCCcCCCCCCCccEEeCCCCccCCcCC
Q 037302          310 QNLVLSHNTLSGIVPPEIGNLTHLRQLDLSHNFINGTIPSQLGYIPNISAVDLSKNNLSGVVP  372 (408)
Q Consensus       310 ~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~  372 (408)
                      ++|++++|++.+..+..+..+++|++|++++|++++..+..+..+++|+.|++++|++.+..|
T Consensus       350 ~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~  412 (455)
T 3v47_A          350 EVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP  412 (455)
T ss_dssp             CEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTT
T ss_pred             CEEECCCCcccccChhhccccccccEEECCCCccccCCHhHhccCCcccEEEccCCCcccCCC
Confidence            555555555554444455555555555555555554444444455555555555555554443

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=100.00  E-value=3.7e-38  Score=297.74  Aligned_cols=370  Identities=21%  Similarity=0.212  Sum_probs=307.8

Q ss_pred             CcEEEcCCCccccccchhhccCCCCcEEeCCCCcCCCCCcccccCCCCCcEEeCCCceec-ccCcccccCCCCCceeecC
Q 037302           21 LESIIIPYTLLSGRIPSEIGALSKLEELALPYNSLTGTIPAEIGSLRNLVELDLSNNILN-GSIPLEFGNLKDLDALRLR   99 (408)
Q Consensus        21 L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~-~~~~~~~~~l~~L~~L~l~   99 (408)
                      -+.++.++..+. .+|. +  .++|++|++++|.++...+..|.++++|++|++++|.+. ...+..|.++++|++|+++
T Consensus        12 ~~~~~c~~~~l~-~lp~-l--~~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls   87 (455)
T 3v47_A           12 GYNAICINRGLH-QVPE-L--PAHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLD   87 (455)
T ss_dssp             TTEEECCSSCCS-SCCC-C--CTTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECT
T ss_pred             ccccCcCCCCcc-cCCC-C--CCccCEEEecCCccCcCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCC
Confidence            346777776665 4444 2  278999999999998777889999999999999999876 3456779999999999999


Q ss_pred             CccccccCCCcCCCCCCCCEEEcCCCeecccCccc--ccCCCCCceEeccCCcccCcCchh-hccCCCCCEEEcCCCcCC
Q 037302          100 GNKLDGLIPSSIGNLTNLTHLDLSLNQLSGRLPQE--VGNLKNLLSLFLDNNNLTGPIPST-LYHLNQLSNLYLAYNNLV  176 (408)
Q Consensus       100 ~~~i~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~--~~~l~~L~~L~l~~~~~~~~~~~~-~~~~~~L~~L~l~~~~~~  176 (408)
                      +|.+....+..+.++++|++|++++|.+.+..+..  +..+++|++|++++|.+....+.. +..+++|++|++++|.+.
T Consensus        88 ~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~  167 (455)
T 3v47_A           88 YNQFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVK  167 (455)
T ss_dssp             TCTTCEECTTTTTTCTTCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBS
T ss_pred             CCccCccChhhccCcccCCEEeCCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCccc
Confidence            99998888899999999999999999987543443  888999999999999998776655 788999999999999988


Q ss_pred             CCCCccccCC--CCCCEEEecCcccccccCcc--------cccccccCeEEccCCcCCCCCCcccCC---CCCccEEEcc
Q 037302          177 GPLPKEVGNM--KNLDSLLLNRNSLTGPIPST--------IGYLNLGGKLDLSHNRLDSPIPPTIGN---LTNLTSLDLS  243 (408)
Q Consensus       177 ~~~~~~~~~~--~~L~~L~l~~~~~~~~~~~~--------~~~~~~L~~l~l~~~~~~~~~~~~l~~---~~~L~~L~l~  243 (408)
                      ...+..+..+  ++++.++++++.+.+.....        +...+.|+.+++++|.+....+..+..   .++|+.|+++
T Consensus       168 ~~~~~~l~~l~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~  247 (455)
T 3v47_A          168 SICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILS  247 (455)
T ss_dssp             CCCTTTSGGGTTCEEEEEECTTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEECT
T ss_pred             ccChhhhhccccccccccccccCcccccchhhccccccccccccceeeeEecCCCcccccchhhhhccccccceeeEeec
Confidence            7766666655  78999999999887543332        234578999999999887544443332   3789999999


Q ss_pred             CCccccc----------CCcccc--CCCCCCEEeCCCCcccccCCccccCCCCCcEEeCCCCccccCCCcCCcCCCCCcE
Q 037302          244 SNQLSGL----------LPREVG--NLKYLDSLSLDGNNLIGSIPPTIGYLTNLTSLNLGYNQLSSSIPPELMNCSQLQN  311 (408)
Q Consensus       244 ~~~~~~~----------~~~~~~--~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~  311 (408)
                      ++.....          ....+.  ..++|+.|++++|.+....+..+..+++|++|++++|.+++..+..+.++++|++
T Consensus       248 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~  327 (455)
T 3v47_A          248 NSYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLK  327 (455)
T ss_dssp             TCTTTSCCTTCCSSCCCCTTTTGGGTTSCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCE
T ss_pred             cccccccccchhhhccCcccccccccccCceEEEecCccccccchhhcccCCCCCEEECCCCcccccChhHhcCcccCCE
Confidence            8744321          111222  2368999999999998888888999999999999999999888888999999999


Q ss_pred             EEcCCCccCCcCCcccccCCCccEEEcCCccccccCCcCCCCCCCccEEeCCCCccCCcCCcccc---CCCeEEccCCcc
Q 037302          312 LVLSHNTLSGIVPPEIGNLTHLRQLDLSHNFINGTIPSQLGYIPNISAVDLSKNNLSGVVPASVR---IIPKLIVSENNL  388 (408)
Q Consensus       312 L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~---~l~~l~l~~n~~  388 (408)
                      |++++|.+.+..+..+..+++|++|++++|++++..|..+..+++|+.|++++|+++++.+..+.   ++++|++++|++
T Consensus       328 L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l  407 (455)
T 3v47_A          328 LNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPW  407 (455)
T ss_dssp             EECCSSCCCEECGGGGTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCB
T ss_pred             EECCCCccCCcChhHhcCcccCCEEECCCCcccccChhhccccccccEEECCCCccccCCHhHhccCCcccEEEccCCCc
Confidence            99999999888788899999999999999999988899999999999999999999998876654   577999999999


Q ss_pred             CCCCCC
Q 037302          389 ELENST  394 (408)
Q Consensus       389 ~~~~~~  394 (408)
                      ++.+|.
T Consensus       408 ~~~~~~  413 (455)
T 3v47_A          408 DCSCPR  413 (455)
T ss_dssp             CCCTTT
T ss_pred             ccCCCc
Confidence            998873

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}

Probab=100.00  E-value=2.8e-38  Score=314.68  Aligned_cols=355  Identities=19%  Similarity=0.268  Sum_probs=279.3

Q ss_pred             cchhhccCCCCcEEeCCCCcCCC-----------------CCccccc--CCCCCcEEeCCCceecccCcccccCCCCCce
Q 037302           35 IPSEIGALSKLEELALPYNSLTG-----------------TIPAEIG--SLRNLVELDLSNNILNGSIPLEFGNLKDLDA   95 (408)
Q Consensus        35 ~~~~~~~~~~L~~L~l~~~~~~~-----------------~~~~~~~--~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~   95 (408)
                      +|..+..+++|++|++++|.+++                 ..|..++  ++++|++|++++|.+.+..|..+.++++|++
T Consensus       440 IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~  519 (876)
T 4ecn_A          440 ISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQS  519 (876)
T ss_dssp             ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGCSSCCE
T ss_pred             hhHHHhcCCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCccChHHHhCCCCCCE
Confidence            66778889999999999998886                 2677766  8999999999999887788888999999999


Q ss_pred             eecCCcc-ccc-cCCCc-------CCCCCCCCEEEcCCCeecccCcc--cccCCCCCceEeccCCcccCcCchhhccCCC
Q 037302           96 LRLRGNK-LDG-LIPSS-------IGNLTNLTHLDLSLNQLSGRLPQ--EVGNLKNLLSLFLDNNNLTGPIPSTLYHLNQ  164 (408)
Q Consensus        96 L~l~~~~-i~~-~~~~~-------l~~l~~L~~L~l~~~~~~~~~~~--~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~  164 (408)
                      |++++|. ++. ..|..       +..+++|++|++++|.+. .++.  .+..+++|+.|++++|.+. .++ .+..+++
T Consensus       520 L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~l~~L~~L~~L~Ls~N~l~-~lp-~~~~L~~  596 (876)
T 4ecn_A          520 LNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLE-EFPASASLQKMVKLGLLDCVHNKVR-HLE-AFGTNVK  596 (876)
T ss_dssp             EECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCC-BCCCHHHHTTCTTCCEEECTTSCCC-BCC-CCCTTSE
T ss_pred             EECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCC-ccCChhhhhcCCCCCEEECCCCCcc-cch-hhcCCCc
Confidence            9999997 665 34433       345569999999999888 6666  7888999999999999888 555 7888899


Q ss_pred             CCEEEcCCCcCCCCCCccccCCCC-CCEEEecCcccccccCcccccccc--cCeEEccCCcCCCCCCcc---cC--CCCC
Q 037302          165 LSNLYLAYNNLVGPLPKEVGNMKN-LDSLLLNRNSLTGPIPSTIGYLNL--GGKLDLSHNRLDSPIPPT---IG--NLTN  236 (408)
Q Consensus       165 L~~L~l~~~~~~~~~~~~~~~~~~-L~~L~l~~~~~~~~~~~~~~~~~~--L~~l~l~~~~~~~~~~~~---l~--~~~~  236 (408)
                      |+.|++++|.+. .++..+..+++ |+.|++++|.+. .++..+...+.  |+.|++++|.+.+..+..   +.  .+++
T Consensus       597 L~~L~Ls~N~l~-~lp~~l~~l~~~L~~L~Ls~N~L~-~lp~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~  674 (876)
T 4ecn_A          597 LTDLKLDYNQIE-EIPEDFCAFTDQVEGLGFSHNKLK-YIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGIN  674 (876)
T ss_dssp             ESEEECCSSCCS-CCCTTSCEECTTCCEEECCSSCCC-SCCSCCCTTCSSCEEEEECCSSCTTTTSSSCSSCTTTCCCCC
T ss_pred             ceEEECcCCccc-cchHHHhhccccCCEEECcCCCCC-cCchhhhccccCCCCEEECcCCcCCCccccchhhhccccCCC
Confidence            999999999887 66667888888 999999999887 55566655543  899999999886544321   22  3458


Q ss_pred             ccEEEccCCcccccCCccccCCCCCCEEeCCCCcccccCCccccC-------CCCCcEEeCCCCccccCCCcCCc--CCC
Q 037302          237 LTSLDLSSNQLSGLLPREVGNLKYLDSLSLDGNNLIGSIPPTIGY-------LTNLTSLNLGYNQLSSSIPPELM--NCS  307 (408)
Q Consensus       237 L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~-------~~~L~~L~l~~~~~~~~~~~~~~--~~~  307 (408)
                      |+.|++++|.+.......+..+++|+.|++++|.+.......+..       +++|++|++++|.++ ..+..+.  .++
T Consensus       675 L~~L~Ls~N~L~~lp~~~~~~l~~L~~L~Ls~N~L~~ip~~~~~~~~~~l~nl~~L~~L~Ls~N~L~-~lp~~l~~~~l~  753 (876)
T 4ecn_A          675 ASTVTLSYNEIQKFPTELFATGSPISTIILSNNLMTSIPENSLKPKDGNYKNTYLLTTIDLRFNKLT-SLSDDFRATTLP  753 (876)
T ss_dssp             EEEEECCSSCCCSCCHHHHHTTCCCSEEECCSCCCSCCCTTSSSCTTSCCTTGGGCCEEECCSSCCC-CCCGGGSTTTCT
T ss_pred             cCEEEccCCcCCccCHHHHccCCCCCEEECCCCcCCccChHHhccccccccccCCccEEECCCCCCc-cchHHhhhccCC
Confidence            999999999888544444557889999999999887443333332       238999999999988 5666665  889


Q ss_pred             CCcEEEcCCCccCCcCCcccccCCCccEEEcCC------ccccccCCcCCCCCCCccEEeCCCCccCCcCCccccCCCeE
Q 037302          308 QLQNLVLSHNTLSGIVPPEIGNLTHLRQLDLSH------NFINGTIPSQLGYIPNISAVDLSKNNLSGVVPASVRIIPKL  381 (408)
Q Consensus       308 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~------~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~l  381 (408)
                      +|+.|++++|++.+ ++..+..+++|+.|++++      |.+.+.+|..+..+++|+.|++++|++..+.+....+++.|
T Consensus       754 ~L~~L~Ls~N~L~~-lp~~l~~L~~L~~L~Ls~N~~ls~N~l~~~ip~~l~~L~~L~~L~Ls~N~L~~Ip~~l~~~L~~L  832 (876)
T 4ecn_A          754 YLSNMDVSYNCFSS-FPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGSNDIRKVDEKLTPQLYIL  832 (876)
T ss_dssp             TCCEEECCSSCCSS-CCCGGGGCTTCCEEECCCCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCCCBCCSCCCSSSCEE
T ss_pred             CcCEEEeCCCCCCc-cchhhhcCCCCCEEECCCCCCcccccccccChHHHhcCCCCCEEECCCCCCCccCHhhcCCCCEE
Confidence            99999999999886 577788899999999976      77777888888899999999999999954444455678899


Q ss_pred             EccCCccCCCCCCCc
Q 037302          382 IVSENNLELENSTSS  396 (408)
Q Consensus       382 ~l~~n~~~~~~~~~~  396 (408)
                      ++++|++...-+..+
T Consensus       833 dLs~N~l~~i~~~~~  847 (876)
T 4ecn_A          833 DIADNPNISIDVTSV  847 (876)
T ss_dssp             ECCSCTTCEEECGGG
T ss_pred             ECCCCCCCccChHHc
Confidence            999999875444443

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=100.00  E-value=4.1e-37  Score=295.40  Aligned_cols=374  Identities=21%  Similarity=0.198  Sum_probs=235.7

Q ss_pred             CCCcccccccccCCCCCCcEEEcCCCccccccchhhccCCCCcEEeCCCCcCCCCCcccccCCCCCcEEeCCCceecccC
Q 037302            4 NGNAAELSQLNFTCFPNLESIIIPYTLLSGRIPSEIGALSKLEELALPYNSLTGTIPAEIGSLRNLVELDLSNNILNGSI   83 (408)
Q Consensus         4 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~   83 (408)
                      ++.++.++...+   ++|++|+++++.+.+..+..+..+++|++|++++|.+++..+..|.++++|++|++++|.+. .+
T Consensus         9 ~n~l~~ip~~~~---~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~-~l   84 (520)
T 2z7x_B            9 KNGLIHVPKDLS---QKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNKLV-KI   84 (520)
T ss_dssp             TSCCSSCCCSCC---TTCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSSCCC-EE
T ss_pred             CCCccccccccc---ccccEEECCCCcccccChhhccccccccEEecCCCccCCcChHHhhcccCCCEEecCCCcee-ec
Confidence            456777776544   89999999999998877788999999999999999998777888999999999999999987 44


Q ss_pred             cccccCCCCCceeecCCcccccc-CCCcCCCCCCCCEEEcCCCeecccCcccccCCCCC--ceEeccCCcc--cCcCchh
Q 037302           84 PLEFGNLKDLDALRLRGNKLDGL-IPSSIGNLTNLTHLDLSLNQLSGRLPQEVGNLKNL--LSLFLDNNNL--TGPIPST  158 (408)
Q Consensus        84 ~~~~~~l~~L~~L~l~~~~i~~~-~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L--~~L~l~~~~~--~~~~~~~  158 (408)
                      |..  .+++|++|++++|.+... .|..+.++++|++|++++|.+..   ..+..+++|  +++++++|.+  ....+..
T Consensus        85 p~~--~l~~L~~L~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~~---~~~~~l~~L~L~~L~l~~n~l~~~~~~~~~  159 (520)
T 2z7x_B           85 SCH--PTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEK---SSVLPIAHLNISKVLLVLGETYGEKEDPEG  159 (520)
T ss_dssp             ECC--CCCCCSEEECCSSCCSSCCCCGGGGGCTTCCEEEEEESSCCG---GGGGGGTTSCEEEEEEEECTTTTSSCCTTT
T ss_pred             Ccc--ccCCccEEeccCCccccccchhhhccCCcceEEEecCcccch---hhccccccceeeEEEeeccccccccccccc
Confidence            544  789999999999998764 56788999999999999998864   346666777  8888888776  3333332


Q ss_pred             hcc--------------------------CCCCCEEEcCCCc------------------------------CCCCCCcc
Q 037302          159 LYH--------------------------LNQLSNLYLAYNN------------------------------LVGPLPKE  182 (408)
Q Consensus       159 ~~~--------------------------~~~L~~L~l~~~~------------------------------~~~~~~~~  182 (408)
                      +..                          +++|+.+++++|.                              +.......
T Consensus       160 l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~  239 (520)
T 2z7x_B          160 LQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILAKLQTNPKLSNLTLNNIETTWNSFIR  239 (520)
T ss_dssp             TTTCCEEEEEEECCSSSCCCCCCCCCCTTCSEEEECCEEECCSTTTTHHHHHHHHGGGGCTTCCEEEEEEEEEEHHHHHH
T ss_pred             ccccccceEEEEeccCcchhhhhhhhhhcccceeeccccccccccccceeecchhhhccccchhhccccccccCHHHHHH
Confidence            222                          2333333333321                              11000000


Q ss_pred             ---ccCCCCCCEEEecCcccccccCccc-----ccccccC--------------------------eEEccCCcCCCCCC
Q 037302          183 ---VGNMKNLDSLLLNRNSLTGPIPSTI-----GYLNLGG--------------------------KLDLSHNRLDSPIP  228 (408)
Q Consensus       183 ---~~~~~~L~~L~l~~~~~~~~~~~~~-----~~~~~L~--------------------------~l~l~~~~~~~~~~  228 (408)
                         ....++|++|++++|.+.+..+..+     ..++.|+                          .++++++.+.... 
T Consensus       240 ~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~~l~~L~~l~l~~n~~~~p~~~~~~~~~~~~L~~L~l~~n~l~~~~-  318 (520)
T 2z7x_B          240 ILQLVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVFGFPQSYIYEIFSNMNIKNFTVSGTRMVHML-  318 (520)
T ss_dssp             HHHHHHTSSCSEEEEEEEEEESCCCCCCCCCCSCCCCEEEEEEEEECCCCSCTHHHHHHHHTCCCSEEEEESSCCCCCC-
T ss_pred             HHHHhhhCcccEEEeecccccCccccchhhcccccCceeEeccccccceecchhhhhcccccCceeEEEcCCCcccccc-
Confidence               0002355666666655554444433     4444444                          4444444433211 


Q ss_pred             cccCCCCCccEEEccCCcccccCCccccCCCCCCEEeCCCCcccc--cCCccccCCCCCcEEeCCCCccccCCC-cCCcC
Q 037302          229 PTIGNLTNLTSLDLSSNQLSGLLPREVGNLKYLDSLSLDGNNLIG--SIPPTIGYLTNLTSLNLGYNQLSSSIP-PELMN  305 (408)
Q Consensus       229 ~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~--~~~~~~~~~~~L~~L~l~~~~~~~~~~-~~~~~  305 (408)
                       ....+++|++|++++|.+.+..+..+..+++|++|++++|.+..  ..+..+..+++|++|++++|.++...+ ..+..
T Consensus       319 -~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~~~~  397 (520)
T 2z7x_B          319 -CPSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSW  397 (520)
T ss_dssp             -CCSSCCCCCEEECCSSCCCTTTTTTCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBCCGGGCSCCC
T ss_pred             -chhhCCcccEEEeECCccChhhhhhhccCCCCCEEEccCCccCccccchHHHhhCCCCCEEECCCCcCCcccccchhcc
Confidence             11455666666666666665555556666666666666666653  223345566666666666666664222 23555


Q ss_pred             CCCCcEEEcCCCccCCcCCcccccCCCccEEEcCCccccccCCcCCCCCCCccEEeCCCCccCCcCCcccc---CCCeEE
Q 037302          306 CSQLQNLVLSHNTLSGIVPPEIGNLTHLRQLDLSHNFINGTIPSQLGYIPNISAVDLSKNNLSGVVPASVR---IIPKLI  382 (408)
Q Consensus       306 ~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~---~l~~l~  382 (408)
                      +++|++|++++|++++..+..+.  ++|+.|++++|+++ .+|..+..+++|+.|++++|+++.+.+..+.   ++++|+
T Consensus       398 l~~L~~L~Ls~N~l~~~~~~~l~--~~L~~L~Ls~N~l~-~ip~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~  474 (520)
T 2z7x_B          398 TKSLLSLNMSSNILTDTIFRCLP--PRIKVLDLHSNKIK-SIPKQVVKLEALQELNVASNQLKSVPDGIFDRLTSLQKIW  474 (520)
T ss_dssp             CTTCCEEECCSSCCCGGGGGSCC--TTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred             CccCCEEECcCCCCCcchhhhhc--ccCCEEECCCCccc-ccchhhhcCCCCCEEECCCCcCCccCHHHhccCCcccEEE
Confidence            66666666666666544333332  46666666666666 4555555666666666666666654443233   345666


Q ss_pred             ccCCccCCC
Q 037302          383 VSENNLELE  391 (408)
Q Consensus       383 l~~n~~~~~  391 (408)
                      +++|++++.
T Consensus       475 l~~N~~~c~  483 (520)
T 2z7x_B          475 LHTNPWDCS  483 (520)
T ss_dssp             CCSSCBCCC
T ss_pred             CcCCCCccc
Confidence            666666553

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=100.00  E-value=5.7e-38  Score=303.48  Aligned_cols=392  Identities=21%  Similarity=0.195  Sum_probs=280.9

Q ss_pred             CCCcccccccccCCCCCCcEEEcCCCccccccchhhccCCCCcEEeCCCCcCCCCCcccccCCCCCcEEeCCCceecccC
Q 037302            4 NGNAAELSQLNFTCFPNLESIIIPYTLLSGRIPSEIGALSKLEELALPYNSLTGTIPAEIGSLRNLVELDLSNNILNGSI   83 (408)
Q Consensus         4 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~   83 (408)
                      ++.++.++...+   ++|++|+++++.+.+..+..+..+++|++|++++|.++...+..|..+++|++|++++|.+.+..
T Consensus        14 ~~~l~~ip~~~~---~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~   90 (549)
T 2z81_A           14 SRSFTSIPSGLT---AAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLS   90 (549)
T ss_dssp             TSCCSSCCSCCC---TTCCEEECCSSCCCEECSSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCSCC
T ss_pred             CCccccccccCC---CCccEEECcCCccCccChhhhhcCCcccEEECCCCCcCccChhhccccccCCEEECCCCccCccC
Confidence            345666776443   78999999999999877888999999999999999999877888999999999999999999777


Q ss_pred             cccccCCCCCceeecCCcccccc-CCCcCCCCCCCCEEEcCCCe-ecccCcccccCCCCCceEeccCCcccCcCchhhcc
Q 037302           84 PLEFGNLKDLDALRLRGNKLDGL-IPSSIGNLTNLTHLDLSLNQ-LSGRLPQEVGNLKNLLSLFLDNNNLTGPIPSTLYH  161 (408)
Q Consensus        84 ~~~~~~l~~L~~L~l~~~~i~~~-~~~~l~~l~~L~~L~l~~~~-~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~  161 (408)
                      +..|.++++|++|++++|.+... .+..+.++++|++|++++|. +....+..+..+++|++|++++|.+....+..+..
T Consensus        91 ~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~  170 (549)
T 2z81_A           91 SSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKS  170 (549)
T ss_dssp             HHHHTTCTTCCEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTT
T ss_pred             HHHhccCCCCcEEECCCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCcccccChhhhhc
Confidence            77799999999999999998754 45678999999999999997 44444467889999999999999998778888999


Q ss_pred             CCCCCEEEcCCCcCCCCCCccccCCCCCCEEEecCccccccc---CcccccccccCeEEccCCcCCCCC-----------
Q 037302          162 LNQLSNLYLAYNNLVGPLPKEVGNMKNLDSLLLNRNSLTGPI---PSTIGYLNLGGKLDLSHNRLDSPI-----------  227 (408)
Q Consensus       162 ~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~---~~~~~~~~~L~~l~l~~~~~~~~~-----------  227 (408)
                      +++|++|+++.+.........+..+++|+.|++++|.+.+..   ......++.++.++++++.+.+..           
T Consensus       171 l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~~~  250 (549)
T 2z81_A          171 IRDIHHLTLHLSESAFLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYI  250 (549)
T ss_dssp             CSEEEEEEEECSBSTTHHHHHHHSTTTBSEEEEESCBCTTCCCCCCSSCCCCCCCCEEEEESCEEEHHHHHHHHGGGGGC
T ss_pred             cccCceEecccCcccccchhhHhhcccccEEEccCCccccccccccchhhhhhcccceeccccccchhHHHHHHHHhhhh
Confidence            999999999998875332233456899999999999887531   122234556666666554332100           


Q ss_pred             -----------------------CcccCCC-----------------------------CCccEEEccCCcccccCCccc
Q 037302          228 -----------------------PPTIGNL-----------------------------TNLTSLDLSSNQLSGLLPREV  255 (408)
Q Consensus       228 -----------------------~~~l~~~-----------------------------~~L~~L~l~~~~~~~~~~~~~  255 (408)
                                             ...+..+                             .+|+.|++++|.+.......+
T Consensus       251 ~~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~l~~~~~~~~~L~~L~l~~n~l~~ip~~~~  330 (549)
T 2z81_A          251 LELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVFLVPCSFS  330 (549)
T ss_dssp             TTCCEEEEESCEEECCSCCCCCTTTCCCCCTTCCEEEEESCBCSCGGGSCCCCHHHHHSTTCCEEEEESSCCCCCCHHHH
T ss_pred             ccccccccccccccccccccccchhhhhhhcccccccccccccchhhhcccchhhhhhcccceEEEeccCccccCCHHHH
Confidence                                   0011112                             345555555555442222222


Q ss_pred             cCCCCCCEEeCCCCcccccC---CccccCCCCCcEEeCCCCccccCCC--cCCcCCCCCcEEEcCCCccCCcCCcccccC
Q 037302          256 GNLKYLDSLSLDGNNLIGSI---PPTIGYLTNLTSLNLGYNQLSSSIP--PELMNCSQLQNLVLSHNTLSGIVPPEIGNL  330 (408)
Q Consensus       256 ~~~~~L~~L~l~~~~~~~~~---~~~~~~~~~L~~L~l~~~~~~~~~~--~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~  330 (408)
                      ..+++|++|++++|.+.+..   ...+..+++|++|++++|.++....  ..+..+++|++|++++|+++ ..+..+..+
T Consensus       331 ~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~~  409 (549)
T 2z81_A          331 QHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFH-PMPDSCQWP  409 (549)
T ss_dssp             HHCTTCCEEECCSSCCCHHHHHHHTCTTSSTTCCEEECTTSCCCCHHHHHHHGGGCTTCCEEECTTCCCC-CCCSCCCCC
T ss_pred             hcCccccEEEccCCccccccccchhhhhccccCcEEEccCCcccccccchhhhhcCCCCCEEECCCCCCc-cCChhhccc
Confidence            45677777777777765432   2235566777777777777764321  33566777777777777776 445566667


Q ss_pred             CCccEEEcCCccccccCCcCCCCCCCccEEeCCCCccCCcCCccccCCCeEEccCCccCCCCCCCcCCCCCCCCC
Q 037302          331 THLRQLDLSHNFINGTIPSQLGYIPNISAVDLSKNNLSGVVPASVRIIPKLIVSENNLELENSTSSENAPPPQAK  405 (408)
Q Consensus       331 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~l~l~~n~~~~~~~~~~~~~~~~~~~  405 (408)
                      ++|++|++++|.++. ++..+  .++|+.|++++|++++.. ..+.++++|++++|+++ .+|.. ..++.|+.+
T Consensus       410 ~~L~~L~Ls~N~l~~-l~~~~--~~~L~~L~Ls~N~l~~~~-~~l~~L~~L~Ls~N~l~-~ip~~-~~l~~L~~L  478 (549)
T 2z81_A          410 EKMRFLNLSSTGIRV-VKTCI--PQTLEVLDVSNNNLDSFS-LFLPRLQELYISRNKLK-TLPDA-SLFPVLLVM  478 (549)
T ss_dssp             TTCCEEECTTSCCSC-CCTTS--CTTCSEEECCSSCCSCCC-CCCTTCCEEECCSSCCS-SCCCG-GGCTTCCEE
T ss_pred             ccccEEECCCCCccc-ccchh--cCCceEEECCCCChhhhc-ccCChhcEEECCCCccC-cCCCc-ccCccCCEE
Confidence            777777777777763 33222  257777778777777653 45667888888888886 67763 556665543

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A

Probab=100.00  E-value=1e-35  Score=281.39  Aligned_cols=345  Identities=30%  Similarity=0.446  Sum_probs=254.6

Q ss_pred             CCCCCcEEEcCCCccccccchhhccCCCCcEEeCCCCcCCCCCcccccCCCCCcEEeCCCceecccCcccccCCCCCcee
Q 037302           17 CFPNLESIIIPYTLLSGRIPSEIGALSKLEELALPYNSLTGTIPAEIGSLRNLVELDLSNNILNGSIPLEFGNLKDLDAL   96 (408)
Q Consensus        17 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L   96 (408)
                      .++++++|++.++.+.. ++ .+..+++|++|++++|.++...+  +..+++|++|++++|.+.+..+  +.++++|++|
T Consensus        44 ~l~~l~~L~l~~~~i~~-l~-~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L  117 (466)
T 1o6v_A           44 DLDQVTTLQADRLGIKS-ID-GVEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADITP--LANLTNLTGL  117 (466)
T ss_dssp             HHHTCCEEECCSSCCCC-CT-TGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCCGG--GTTCTTCCEE
T ss_pred             HhccccEEecCCCCCcc-Cc-chhhhcCCCEEECCCCccCCchh--hhccccCCEEECCCCccccChh--hcCCCCCCEE
Confidence            35678888888887763 33 37778888888888888775433  7888888888888888774443  7788888888


Q ss_pred             ecCCccccccCCCcCCCCCCCCEEEcCCCeecccCcccccCCCCCceEeccCCcccCcCchhhccCCCCCEEEcCCCcCC
Q 037302           97 RLRGNKLDGLIPSSIGNLTNLTHLDLSLNQLSGRLPQEVGNLKNLLSLFLDNNNLTGPIPSTLYHLNQLSNLYLAYNNLV  176 (408)
Q Consensus        97 ~l~~~~i~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~  176 (408)
                      ++++|.+....+  +..+++|++|++++|.+...  ..+..+++|++++++. .+...  ..+..+++|+.|++++|.+.
T Consensus       118 ~L~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~l~~-~~~~~--~~~~~l~~L~~L~l~~n~l~  190 (466)
T 1o6v_A          118 TLFNNQITDIDP--LKNLTNLNRLELSSNTISDI--SALSGLTSLQQLSFGN-QVTDL--KPLANLTTLERLDISSNKVS  190 (466)
T ss_dssp             ECCSSCCCCCGG--GTTCTTCSEEEEEEEEECCC--GGGTTCTTCSEEEEEE-SCCCC--GGGTTCTTCCEEECCSSCCC
T ss_pred             ECCCCCCCCChH--HcCCCCCCEEECCCCccCCC--hhhccCCcccEeecCC-cccCc--hhhccCCCCCEEECcCCcCC
Confidence            888888775533  77888888888888887643  3477788888888863 33322  23677888888888888766


Q ss_pred             CCCCccccCCCCCCEEEecCcccccccCcccccccccCeEEccCCcCCCCCCcccCCCCCccEEEccCCcccccCCcccc
Q 037302          177 GPLPKEVGNMKNLDSLLLNRNSLTGPIPSTIGYLNLGGKLDLSHNRLDSPIPPTIGNLTNLTSLDLSSNQLSGLLPREVG  256 (408)
Q Consensus       177 ~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~  256 (408)
                      ..  ..+..+++|++|++++|.+.+..+  +..++.|+.+++++|.+...  ..+..+++|++|++++|.+.+..+  +.
T Consensus       191 ~~--~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~--~~  262 (466)
T 1o6v_A          191 DI--SVLAKLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQLKDI--GTLASLTNLTDLDLANNQISNLAP--LS  262 (466)
T ss_dssp             CC--GGGGGCTTCSEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG--GT
T ss_pred             CC--hhhccCCCCCEEEecCCccccccc--ccccCCCCEEECCCCCcccc--hhhhcCCCCCEEECCCCccccchh--hh
Confidence            43  346778888888888887765433  56678888888888877653  356677888888888887764433  67


Q ss_pred             CCCCCCEEeCCCCcccccCCccccCCCCCcEEeCCCCccccCCCcCCcCCCCCcEEEcCCCccCCcCCcccccCCCccEE
Q 037302          257 NLKYLDSLSLDGNNLIGSIPPTIGYLTNLTSLNLGYNQLSSSIPPELMNCSQLQNLVLSHNTLSGIVPPEIGNLTHLRQL  336 (408)
Q Consensus       257 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L  336 (408)
                      .+++|+.|++++|.+....+  +..+++|++|++++|.+++..+  +..+++|+.|++++|++.+..+  +..+++|++|
T Consensus       263 ~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L  336 (466)
T 1o6v_A          263 GLTKLTELKLGANQISNISP--LAGLTALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNISDISP--VSSLTKLQRL  336 (466)
T ss_dssp             TCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCSCCGG--GGGCTTCSEEECCSSCCSCCGG--GGGCTTCCEE
T ss_pred             cCCCCCEEECCCCccCcccc--ccCCCccCeEEcCCCcccCchh--hcCCCCCCEEECcCCcCCCchh--hccCccCCEe
Confidence            77888888888887764432  6778888888888888775432  6778888888888888775543  6778888888


Q ss_pred             EcCCccccccCCcCCCCCCCccEEeCCCCccCCcCC-ccccCCCeEEccCCccCC
Q 037302          337 DLSHNFINGTIPSQLGYIPNISAVDLSKNNLSGVVP-ASVRIIPKLIVSENNLEL  390 (408)
Q Consensus       337 ~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~-~~~~~l~~l~l~~n~~~~  390 (408)
                      ++++|.+++.  ..+..+++|+.|++++|++.+..| ..+.+++.|++++|++++
T Consensus       337 ~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~n~~~~  389 (466)
T 1o6v_A          337 FFYNNKVSDV--SSLANLTNINWLSAGHNQISDLTPLANLTRITQLGLNDQAWTN  389 (466)
T ss_dssp             ECCSSCCCCC--GGGTTCTTCCEEECCSSCCCBCGGGTTCTTCCEEECCCEEEEC
T ss_pred             ECCCCccCCc--hhhccCCCCCEEeCCCCccCccchhhcCCCCCEEeccCCcccC
Confidence            8888888754  356778888888888888887766 334566688888888876

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A

Probab=100.00  E-value=2e-35  Score=279.38  Aligned_cols=335  Identities=30%  Similarity=0.455  Sum_probs=283.9

Q ss_pred             CCcccccccccCCCCCCcEEEcCCCccccccchhhccCCCCcEEeCCCCcCCCCCcccccCCCCCcEEeCCCceecccCc
Q 037302            5 GNAAELSQLNFTCFPNLESIIIPYTLLSGRIPSEIGALSKLEELALPYNSLTGTIPAEIGSLRNLVELDLSNNILNGSIP   84 (408)
Q Consensus         5 ~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~   84 (408)
                      +.+..++  .+..+++|++|+++++.+.+..+  +..+++|++|++++|.+....+  +.++++|++|++++|.+.+..+
T Consensus        56 ~~i~~l~--~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~  129 (466)
T 1o6v_A           56 LGIKSID--GVEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADITP--LANLTNLTGLTLFNNQITDIDP  129 (466)
T ss_dssp             SCCCCCT--TGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCCGG
T ss_pred             CCCccCc--chhhhcCCCEEECCCCccCCchh--hhccccCCEEECCCCccccChh--hcCCCCCCEEECCCCCCCCChH
Confidence            3455555  48889999999999999886544  8999999999999999885543  9999999999999999885433


Q ss_pred             ccccCCCCCceeecCCccccccCCCcCCCCCCCCEEEcCCCeecccCcccccCCCCCceEeccCCcccCcCchhhccCCC
Q 037302           85 LEFGNLKDLDALRLRGNKLDGLIPSSIGNLTNLTHLDLSLNQLSGRLPQEVGNLKNLLSLFLDNNNLTGPIPSTLYHLNQ  164 (408)
Q Consensus        85 ~~~~~l~~L~~L~l~~~~i~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~  164 (408)
                        +..+++|++|++++|.+...  ..+..+++|++|++++ .+...  ..+..+++|++|+++++.+...  ..+..+++
T Consensus       130 --~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~l~~-~~~~~--~~~~~l~~L~~L~l~~n~l~~~--~~l~~l~~  200 (466)
T 1o6v_A          130 --LKNLTNLNRLELSSNTISDI--SALSGLTSLQQLSFGN-QVTDL--KPLANLTTLERLDISSNKVSDI--SVLAKLTN  200 (466)
T ss_dssp             --GTTCTTCSEEEEEEEEECCC--GGGTTCTTCSEEEEEE-SCCCC--GGGTTCTTCCEEECCSSCCCCC--GGGGGCTT
T ss_pred             --HcCCCCCCEEECCCCccCCC--hhhccCCcccEeecCC-cccCc--hhhccCCCCCEEECcCCcCCCC--hhhccCCC
Confidence              88999999999999998754  3588999999999964 33322  3488999999999999998743  45788999


Q ss_pred             CCEEEcCCCcCCCCCCccccCCCCCCEEEecCcccccccCcccccccccCeEEccCCcCCCCCCcccCCCCCccEEEccC
Q 037302          165 LSNLYLAYNNLVGPLPKEVGNMKNLDSLLLNRNSLTGPIPSTIGYLNLGGKLDLSHNRLDSPIPPTIGNLTNLTSLDLSS  244 (408)
Q Consensus       165 L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~  244 (408)
                      |+.|++++|.+....+  +..+++|+.|++++|.+.+.  ..+..+++|+.+++++|.+....+  +..+++|++|++++
T Consensus       201 L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~  274 (466)
T 1o6v_A          201 LESLIATNNQISDITP--LGILTNLDELSLNGNQLKDI--GTLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGA  274 (466)
T ss_dssp             CSEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCS
T ss_pred             CCEEEecCCccccccc--ccccCCCCEEECCCCCcccc--hhhhcCCCCCEEECCCCccccchh--hhcCCCCCEEECCC
Confidence            9999999998875433  67899999999999988753  467889999999999999876543  78899999999999


Q ss_pred             CcccccCCccccCCCCCCEEeCCCCcccccCCccccCCCCCcEEeCCCCccccCCCcCCcCCCCCcEEEcCCCccCCcCC
Q 037302          245 NQLSGLLPREVGNLKYLDSLSLDGNNLIGSIPPTIGYLTNLTSLNLGYNQLSSSIPPELMNCSQLQNLVLSHNTLSGIVP  324 (408)
Q Consensus       245 ~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~  324 (408)
                      |.+....+  +..+++|+.|++++|.+....+  +..+++|++|++++|.+++..+  +..+++|++|++++|++.+.  
T Consensus       275 n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~--  346 (466)
T 1o6v_A          275 NQISNISP--LAGLTALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFYNNKVSDV--  346 (466)
T ss_dssp             SCCCCCGG--GTTCTTCSEEECCSSCCSCCGG--GGGCTTCSEEECCSSCCSCCGG--GGGCTTCCEEECCSSCCCCC--
T ss_pred             CccCcccc--ccCCCccCeEEcCCCcccCchh--hcCCCCCCEEECcCCcCCCchh--hccCccCCEeECCCCccCCc--
Confidence            98875433  7789999999999999875433  7889999999999999986543  77899999999999999865  


Q ss_pred             cccccCCCccEEEcCCccccccCCcCCCCCCCccEEeCCCCccCCc
Q 037302          325 PEIGNLTHLRQLDLSHNFINGTIPSQLGYIPNISAVDLSKNNLSGV  370 (408)
Q Consensus       325 ~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~  370 (408)
                      ..+..+++|+.|++++|++++..|  +..+++|+.|++++|++.+.
T Consensus       347 ~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~~~~~  390 (466)
T 1o6v_A          347 SSLANLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQAWTNA  390 (466)
T ss_dssp             GGGTTCTTCCEEECCSSCCCBCGG--GTTCTTCCEEECCCEEEECC
T ss_pred             hhhccCCCCCEEeCCCCccCccch--hhcCCCCCEEeccCCcccCC
Confidence            578899999999999999997776  78999999999999999884

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=100.00  E-value=5.8e-36  Score=287.37  Aligned_cols=371  Identities=22%  Similarity=0.220  Sum_probs=264.9

Q ss_pred             cEEEcCCCccccccchhhccCCCCcEEeCCCCcCCCCCcccccCCCCCcEEeCCCceecccCcccccCCCCCceeecCCc
Q 037302           22 ESIIIPYTLLSGRIPSEIGALSKLEELALPYNSLTGTIPAEIGSLRNLVELDLSNNILNGSIPLEFGNLKDLDALRLRGN  101 (408)
Q Consensus        22 ~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~  101 (408)
                      ++++++++.+. .+|..+.  ++|++|++++|.+....+..|.++++|++|++++|.+.+..|..|.++++|++|++++|
T Consensus         3 ~~l~ls~n~l~-~ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N   79 (520)
T 2z7x_B            3 FLVDRSKNGLI-HVPKDLS--QKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHN   79 (520)
T ss_dssp             CEEECTTSCCS-SCCCSCC--TTCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSS
T ss_pred             ceEecCCCCcc-ccccccc--ccccEEECCCCcccccChhhccccccccEEecCCCccCCcChHHhhcccCCCEEecCCC
Confidence            58999999988 4665555  89999999999998777788999999999999999999878889999999999999999


Q ss_pred             cccccCCCcCCCCCCCCEEEcCCCeecc-cCcccccCCCCCceEeccCCcccCcCchhhccCCCC--CEEEcCCCcC--C
Q 037302          102 KLDGLIPSSIGNLTNLTHLDLSLNQLSG-RLPQEVGNLKNLLSLFLDNNNLTGPIPSTLYHLNQL--SNLYLAYNNL--V  176 (408)
Q Consensus       102 ~i~~~~~~~l~~l~~L~~L~l~~~~~~~-~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L--~~L~l~~~~~--~  176 (408)
                      .++.++..   .+++|++|++++|.+.. ..+..+..+++|++|++++|.+..   ..+..+++|  +.+++++|.+  .
T Consensus        80 ~l~~lp~~---~l~~L~~L~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~~---~~~~~l~~L~L~~L~l~~n~l~~~  153 (520)
T 2z7x_B           80 KLVKISCH---PTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEK---SSVLPIAHLNISKVLLVLGETYGE  153 (520)
T ss_dssp             CCCEEECC---CCCCCSEEECCSSCCSSCCCCGGGGGCTTCCEEEEEESSCCG---GGGGGGTTSCEEEEEEEECTTTTS
T ss_pred             ceeecCcc---ccCCccEEeccCCccccccchhhhccCCcceEEEecCcccch---hhccccccceeeEEEeeccccccc
Confidence            99865443   79999999999999986 356889999999999999998874   456778888  9999998877  3


Q ss_pred             CCCCccccC--------------------------CCCCCEEEecCcc------------------------------cc
Q 037302          177 GPLPKEVGN--------------------------MKNLDSLLLNRNS------------------------------LT  200 (408)
Q Consensus       177 ~~~~~~~~~--------------------------~~~L~~L~l~~~~------------------------------~~  200 (408)
                      ...+..+..                          +++|+.+++++|.                              +.
T Consensus       154 ~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~  233 (520)
T 2z7x_B          154 KEDPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILAKLQTNPKLSNLTLNNIETT  233 (520)
T ss_dssp             SCCTTTTTTCCEEEEEEECCSSSCCCCCCCCCCTTCSEEEECCEEECCSTTTTHHHHHHHHGGGGCTTCCEEEEEEEEEE
T ss_pred             ccccccccccccceEEEEeccCcchhhhhhhhhhcccceeeccccccccccccceeecchhhhccccchhhccccccccC
Confidence            333332222                          4444444444442                              22


Q ss_pred             cccCcc---cccccccCeEEccCCcCCCCCCccc-----CCCCCccEEEccCCcccccCCcc------------------
Q 037302          201 GPIPST---IGYLNLGGKLDLSHNRLDSPIPPTI-----GNLTNLTSLDLSSNQLSGLLPRE------------------  254 (408)
Q Consensus       201 ~~~~~~---~~~~~~L~~l~l~~~~~~~~~~~~l-----~~~~~L~~L~l~~~~~~~~~~~~------------------  254 (408)
                      +.....   ....+.|++++++++.+.+..+..+     ..+++|+.++++++.+. .....                  
T Consensus       234 ~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~~l~~L~~l~l~~n~~~-~p~~~~~~~~~~~~L~~L~l~~n  312 (520)
T 2z7x_B          234 WNSFIRILQLVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVFG-FPQSYIYEIFSNMNIKNFTVSGT  312 (520)
T ss_dssp             HHHHHHHHHHHHTSSCSEEEEEEEEEESCCCCCCCCCCSCCCCEEEEEEEEECCCC-SCTHHHHHHHHTCCCSEEEEESS
T ss_pred             HHHHHHHHHHhhhCcccEEEeecccccCccccchhhcccccCceeEecccccccee-cchhhhhcccccCceeEEEcCCC
Confidence            100000   0113478888888888775666665     66677777766666541 11011                  


Q ss_pred             -------ccCCCCCCEEeCCCCcccccCCccccCCCCCcEEeCCCCcccc--CCCcCCcCCCCCcEEEcCCCccCC-cCC
Q 037302          255 -------VGNLKYLDSLSLDGNNLIGSIPPTIGYLTNLTSLNLGYNQLSS--SIPPELMNCSQLQNLVLSHNTLSG-IVP  324 (408)
Q Consensus       255 -------~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~--~~~~~~~~~~~L~~L~l~~~~~~~-~~~  324 (408)
                             ...+++|++|++++|.+.+..+..+..+++|++|++++|.+++  ..+..+..+++|++|++++|.+.+ ...
T Consensus       313 ~l~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~  392 (520)
T 2z7x_B          313 RMVHMLCPSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKK  392 (520)
T ss_dssp             CCCCCCCCSSCCCCCEEECCSSCCCTTTTTTCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBCCGGG
T ss_pred             ccccccchhhCCcccEEEeECCccChhhhhhhccCCCCCEEEccCCccCccccchHHHhhCCCCCEEECCCCcCCccccc
Confidence                   1456777788888777776566667777788888888777774  223446677788888888887775 333


Q ss_pred             cccccCCCccEEEcCCccccccCCcCCCCCCCccEEeCCCCccCCcCCc--cccCCCeEEccCCccCCCCCCC-cCCCCC
Q 037302          325 PEIGNLTHLRQLDLSHNFINGTIPSQLGYIPNISAVDLSKNNLSGVVPA--SVRIIPKLIVSENNLELENSTS-SENAPP  401 (408)
Q Consensus       325 ~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~--~~~~l~~l~l~~n~~~~~~~~~-~~~~~~  401 (408)
                      ..+..+++|++|++++|++++..|..+.  ++|+.|++++|++..+.+.  .+.++++|++++|+++ .+|.. +..++.
T Consensus       393 ~~~~~l~~L~~L~Ls~N~l~~~~~~~l~--~~L~~L~Ls~N~l~~ip~~~~~l~~L~~L~L~~N~l~-~l~~~~~~~l~~  469 (520)
T 2z7x_B          393 GDCSWTKSLLSLNMSSNILTDTIFRCLP--PRIKVLDLHSNKIKSIPKQVVKLEALQELNVASNQLK-SVPDGIFDRLTS  469 (520)
T ss_dssp             CSCCCCTTCCEEECCSSCCCGGGGGSCC--TTCCEEECCSSCCCCCCGGGGGCTTCCEEECCSSCCC-CCCTTTTTTCTT
T ss_pred             chhccCccCCEEECcCCCCCcchhhhhc--ccCCEEECCCCcccccchhhhcCCCCCEEECCCCcCC-ccCHHHhccCCc
Confidence            3466677788888888877766555543  6788888888888743332  2345668888888886 56665 777776


Q ss_pred             CCCC
Q 037302          402 PQAK  405 (408)
Q Consensus       402 ~~~~  405 (408)
                      |+.+
T Consensus       470 L~~L  473 (520)
T 2z7x_B          470 LQKI  473 (520)
T ss_dssp             CCEE
T ss_pred             ccEE
Confidence            6543

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=100.00  E-value=1.5e-35  Score=286.90  Aligned_cols=373  Identities=21%  Similarity=0.206  Sum_probs=229.1

Q ss_pred             CCcccccccccCCCCCCcEEEcCCCccccccchhhccCCCCcEEeCCCCcCCCCCcccccCCCCCcEEeCCCceecccCc
Q 037302            5 GNAAELSQLNFTCFPNLESIIIPYTLLSGRIPSEIGALSKLEELALPYNSLTGTIPAEIGSLRNLVELDLSNNILNGSIP   84 (408)
Q Consensus         5 ~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~   84 (408)
                      ++++.++...+   ++|++|+++++.+.+..+..+..+++|++|++++|.++...+..|.++++|++|++++|.+. .+|
T Consensus        41 ~~L~~ip~~~~---~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp  116 (562)
T 3a79_B           41 RNLTHVPKDLP---PRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHNRLQ-NIS  116 (562)
T ss_dssp             SCCCSCCTTSC---TTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECTTSCCC-EEC
T ss_pred             CCCccCCCCCC---CCcCEEECCCCCccccChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEECCCCcCC-ccC
Confidence            34455554332   66777777777777666666777777777777777776666666777777777777777766 334


Q ss_pred             ccccCCCCCceeecCCccccccC-CCcCCCCCCCCEEEcCCCeecccCcccccCCCCC--ceEeccCCcc--cCcCchhh
Q 037302           85 LEFGNLKDLDALRLRGNKLDGLI-PSSIGNLTNLTHLDLSLNQLSGRLPQEVGNLKNL--LSLFLDNNNL--TGPIPSTL  159 (408)
Q Consensus        85 ~~~~~l~~L~~L~l~~~~i~~~~-~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L--~~L~l~~~~~--~~~~~~~~  159 (408)
                      ..  .+++|++|++++|.+.... +..+.++++|++|++++|.+...   .+..+++|  +++++++|.+  ....+..+
T Consensus       117 ~~--~l~~L~~L~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~~~---~~~~l~~L~L~~L~L~~n~l~~~~~~~~~l  191 (562)
T 3a79_B          117 CC--PMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQL---DLLPVAHLHLSCILLDLVSYHIKGGETESL  191 (562)
T ss_dssp             SC--CCTTCSEEECCSSCCSBCCCCGGGGGCTTCCEEEEECSBCCTT---TTGGGTTSCEEEEEEEESSCCCCSSSCCEE
T ss_pred             cc--ccccCCEEECCCCCccccCchHhhcccCcccEEecCCCccccC---chhhhhhceeeEEEeecccccccccCcccc
Confidence            33  5677777777777766543 35667777777777777766532   23333444  6777666655  32222222


Q ss_pred             cc--------------------------CCCCCEEEcCCCc----------------------------CCCC----CCc
Q 037302          160 YH--------------------------LNQLSNLYLAYNN----------------------------LVGP----LPK  181 (408)
Q Consensus       160 ~~--------------------------~~~L~~L~l~~~~----------------------------~~~~----~~~  181 (408)
                      ..                          +++|+.++++++.                            +...    .+.
T Consensus       192 ~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~l~~~~~~l~~l~~L~~L~L~~~~l~~~~~~~~~~  271 (562)
T 3a79_B          192 QIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWKCSVKLFQ  271 (562)
T ss_dssp             EECCEEEEEEEECSSSCCCCCCEEEESSEEEEEEEEEECCSTTHHHHHHHHHHHHSCSSCEEEEEEEEEECHHHHHHHHH
T ss_pred             cccCcceEEEEecCccchhhhhhhcccccceEEEecccccccccchHHHHHHHHhccCcceEEEecCCcCcHHHHHHHHH
Confidence            22                          2223333333221                            0000    000


Q ss_pred             cccCCCCCCEEEecCcccccccCccc-----ccc--------------------------cccCeEEccCCcCCCCCCcc
Q 037302          182 EVGNMKNLDSLLLNRNSLTGPIPSTI-----GYL--------------------------NLGGKLDLSHNRLDSPIPPT  230 (408)
Q Consensus       182 ~~~~~~~L~~L~l~~~~~~~~~~~~~-----~~~--------------------------~~L~~l~l~~~~~~~~~~~~  230 (408)
                       ....++|++|++++|.+.+..+..+     ..+                          ..++.++++++.+....  .
T Consensus       272 -~~~~~~L~~L~l~~n~l~~~ip~~~~~~~~~~L~~L~~~~~~~~~~~~p~~~~~~~~~~~~L~~L~l~~n~~~~~~--~  348 (562)
T 3a79_B          272 -FFWPRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAEMNIKMLSISDTPFIHMV--C  348 (562)
T ss_dssp             -HHTTSSEEEEEEEEEEECSCCCCCCCCCCSCSCCEEEEEEEEECCCSSCHHHHHHHHHTCCCSEEEEESSCCCCCC--C
T ss_pred             -hhhcccccEEEEeccEeeccccchhhhcccccchheehhhcccceeecChhhhhhhhccCcceEEEccCCCccccc--C
Confidence             0011256666666665553333322     111                          34666666666554322  1


Q ss_pred             cCCCCCccEEEccCCcccccCCccccCCCCCCEEeCCCCcccccC--CccccCCCCCcEEeCCCCcccc-CCCcCCcCCC
Q 037302          231 IGNLTNLTSLDLSSNQLSGLLPREVGNLKYLDSLSLDGNNLIGSI--PPTIGYLTNLTSLNLGYNQLSS-SIPPELMNCS  307 (408)
Q Consensus       231 l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~--~~~~~~~~~L~~L~l~~~~~~~-~~~~~~~~~~  307 (408)
                      ...+++|++|++++|.+.+..+..+..+++|++|++++|.+....  +..+..+++|++|++++|.++. .....+..++
T Consensus       349 ~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~l~  428 (562)
T 3a79_B          349 PPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAE  428 (562)
T ss_dssp             CSSCCCCCEEECCSSCCCTTTTTTCCSCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECTTSCCBSCCSSCCCCCCT
T ss_pred             ccCCCCceEEECCCCccccchhhhhcccCCCCEEECCCCCcCCcccchhhhcCCCCCCEEECCCCcCCCccChhhhcCcc
Confidence            256678888888888877666677777888888888888776432  3456777888888888888876 3334466778


Q ss_pred             CCcEEEcCCCccCCcCCcccccCCCccEEEcCCccccccCCcCCCCCCCccEEeCCCCccCCcCCcccc---CCCeEEcc
Q 037302          308 QLQNLVLSHNTLSGIVPPEIGNLTHLRQLDLSHNFINGTIPSQLGYIPNISAVDLSKNNLSGVVPASVR---IIPKLIVS  384 (408)
Q Consensus       308 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~---~l~~l~l~  384 (408)
                      +|++|++++|++++..+..+.  ++|++|++++|+++ .+|..+..+++|+.|++++|+++.+.+..+.   ++++|+++
T Consensus       429 ~L~~L~l~~n~l~~~~~~~l~--~~L~~L~L~~N~l~-~ip~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~l~  505 (562)
T 3a79_B          429 SILVLNLSSNMLTGSVFRCLP--PKVKVLDLHNNRIM-SIPKDVTHLQALQELNVASNQLKSVPDGVFDRLTSLQYIWLH  505 (562)
T ss_dssp             TCCEEECCSSCCCGGGGSSCC--TTCSEEECCSSCCC-CCCTTTTSSCCCSEEECCSSCCCCCCTTSTTTCTTCCCEECC
T ss_pred             cCCEEECCCCCCCcchhhhhc--CcCCEEECCCCcCc-ccChhhcCCCCCCEEECCCCCCCCCCHHHHhcCCCCCEEEec
Confidence            888888888887654433332  57888888888887 5565555788888888888888865554343   45588888


Q ss_pred             CCccCCCC
Q 037302          385 ENNLELEN  392 (408)
Q Consensus       385 ~n~~~~~~  392 (408)
                      +|++.+..
T Consensus       506 ~N~~~c~c  513 (562)
T 3a79_B          506 DNPWDCTC  513 (562)
T ss_dssp             SCCBCCCH
T ss_pred             CCCcCCCc
Confidence            88877643

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=100.00  E-value=1.5e-35  Score=281.38  Aligned_cols=320  Identities=26%  Similarity=0.250  Sum_probs=218.5

Q ss_pred             cEEEcCCCccccccchhhccCCCCcEEeCCCCcCCCCCcccccCCCCCcEEeCCCceecccCcccccCCCCCceeecCCc
Q 037302           22 ESIIIPYTLLSGRIPSEIGALSKLEELALPYNSLTGTIPAEIGSLRNLVELDLSNNILNGSIPLEFGNLKDLDALRLRGN  101 (408)
Q Consensus        22 ~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~  101 (408)
                      +.+++++..+. .+|..+.  ++++.|++++|.++...+..|.++++|++|++++|.+....+..|.++++|++|++++|
T Consensus        14 ~~v~c~~~~l~-~ip~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n   90 (477)
T 2id5_A           14 RAVLCHRKRFV-AVPEGIP--TETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSN   90 (477)
T ss_dssp             TEEECCSCCCS-SCCSCCC--TTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred             CEEEeCCCCcC-cCCCCCC--CCCcEEECCCCccceECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCC
Confidence            56777766665 3444332  47888888888887766777888888888888888887777778888888888888888


Q ss_pred             cccccCCCcCCCCCCCCEEEcCCCeecccCcccccCCCCCceEeccCCcccCcCchhhccCCCCCEEEcCCCcCCCCCCc
Q 037302          102 KLDGLIPSSIGNLTNLTHLDLSLNQLSGRLPQEVGNLKNLLSLFLDNNNLTGPIPSTLYHLNQLSNLYLAYNNLVGPLPK  181 (408)
Q Consensus       102 ~i~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~  181 (408)
                      .+..+.+..|.++++|++|++++|.+....+..+..+++|++|++++|.+....+..+..+++|+.|++++|.+......
T Consensus        91 ~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~  170 (477)
T 2id5_A           91 RLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTE  170 (477)
T ss_dssp             CCCSCCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCSSCCHH
T ss_pred             cCCccCcccccCCCCCCEEECCCCccccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCcCcccChh
Confidence            88777777778888888888888887766667777888888888888877766666777778888888887777655555


Q ss_pred             cccCCCCCCEEEecCcccccccCcccccccccCeEEccCCcCCCCCCcccCCCCCccEEEccCCcccccCCccccCCCCC
Q 037302          182 EVGNMKNLDSLLLNRNSLTGPIPSTIGYLNLGGKLDLSHNRLDSPIPPTIGNLTNLTSLDLSSNQLSGLLPREVGNLKYL  261 (408)
Q Consensus       182 ~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L  261 (408)
                      .+..+++|+.|++.+|.+.......+..++.|+.++++++......+.......+|++|++++|.+.......+..+++|
T Consensus       171 ~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L  250 (477)
T 2id5_A          171 ALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVYL  250 (477)
T ss_dssp             HHTTCTTCCEEEEESCCCCEECTTCSCSCTTCCEEEEECCTTCCEECTTTTTTCCCSEEEEESSCCCSCCHHHHTTCTTC
T ss_pred             HhcccCCCcEEeCCCCcCcEeChhhcccCcccceeeCCCCccccccCcccccCccccEEECcCCcccccCHHHhcCcccc
Confidence            67777777777777777665555566666667777776655443333333333466666666666654443455556666


Q ss_pred             CEEeCCCCcccccCCccccCCCCCcEEeCCCCccccCCCcCCcCCCCCcEEEcCCCccCCcCCcccccCCCccEEEcCCc
Q 037302          262 DSLSLDGNNLIGSIPPTIGYLTNLTSLNLGYNQLSSSIPPELMNCSQLQNLVLSHNTLSGIVPPEIGNLTHLRQLDLSHN  341 (408)
Q Consensus       262 ~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~  341 (408)
                      +.|++++|.+.......+..+++|++|++++|.+....+..+.++++|+.|++++|.++......|..+++|++|++++|
T Consensus       251 ~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N  330 (477)
T 2id5_A          251 RFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSVGNLETLILDSN  330 (477)
T ss_dssp             CEEECCSSCCCEECTTSCTTCTTCCEEECCSSCCSEECTTTBTTCTTCCEEECCSSCCSCCCGGGBSCGGGCCEEECCSS
T ss_pred             CeeECCCCcCCccChhhccccccCCEEECCCCccceECHHHhcCcccCCEEECCCCcCceeCHhHcCCCcccCEEEccCC
Confidence            66666666655444455556666666666666666555555566666666666666665554455555666666666666


Q ss_pred             ccc
Q 037302          342 FIN  344 (408)
Q Consensus       342 ~~~  344 (408)
                      ++.
T Consensus       331 ~l~  333 (477)
T 2id5_A          331 PLA  333 (477)
T ss_dssp             CEE
T ss_pred             Ccc
Confidence            554

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=100.00  E-value=3.4e-35  Score=278.97  Aligned_cols=301  Identities=24%  Similarity=0.221  Sum_probs=156.8

Q ss_pred             CCcEEEcCCCccccccchhhccCCCCcEEeCCCCcCCCCCcccccCCCCCcEEeCCCceecccCcccccCCCCCceeecC
Q 037302           20 NLESIIIPYTLLSGRIPSEIGALSKLEELALPYNSLTGTIPAEIGSLRNLVELDLSNNILNGSIPLEFGNLKDLDALRLR   99 (408)
Q Consensus        20 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~   99 (408)
                      ++++|+++++.+.+..+..|..+++|++|++++|.+....+..|.++++|++|++++|.+....+..|.++++|++|+++
T Consensus        33 ~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls  112 (477)
T 2id5_A           33 ETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDIS  112 (477)
T ss_dssp             TCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCSCCTTSSTTCTTCCEEECT
T ss_pred             CCcEEECCCCccceECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCCcCCccCcccccCCCCCCEEECC
Confidence            45555555555554444455555555555555555554445555555555555555555553333444555555555555


Q ss_pred             CccccccCCCcCCCCCCCCEEEcCCCeecccCcccccCCCCCceEeccCCcccCcCchhhccCCCCCEEEcCCCcCCCCC
Q 037302          100 GNKLDGLIPSSIGNLTNLTHLDLSLNQLSGRLPQEVGNLKNLLSLFLDNNNLTGPIPSTLYHLNQLSNLYLAYNNLVGPL  179 (408)
Q Consensus       100 ~~~i~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~  179 (408)
                      +|.+....+..+..+++|++|++++|.+....+..+..+++|++|++++|.++......+..+++|+.|++++|.+....
T Consensus       113 ~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~  192 (477)
T 2id5_A          113 ENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAIR  192 (477)
T ss_dssp             TSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCSSCCHHHHTTCTTCCEEEEESCCCCEEC
T ss_pred             CCccccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCcCcccChhHhcccCCCcEEeCCCCcCcEeC
Confidence            55555444555555555555555555554444445555555555555555555444444555555555555555554433


Q ss_pred             CccccCCCCCCEEEecCcccccccCcccccccccCeEEccCCcCCCCCCcccCCCCCccEEEccCCcccccCCccccCCC
Q 037302          180 PKEVGNMKNLDSLLLNRNSLTGPIPSTIGYLNLGGKLDLSHNRLDSPIPPTIGNLTNLTSLDLSSNQLSGLLPREVGNLK  259 (408)
Q Consensus       180 ~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~  259 (408)
                      +..+..+++|+.|++++|...+..+........|+.|++++|.+.......+..+++|+.|++++|.+.......+..++
T Consensus       193 ~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~  272 (477)
T 2id5_A          193 DYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPISTIEGSMLHELL  272 (477)
T ss_dssp             TTCSCSCTTCCEEEEECCTTCCEECTTTTTTCCCSEEEEESSCCCSCCHHHHTTCTTCCEEECCSSCCCEECTTSCTTCT
T ss_pred             hhhcccCcccceeeCCCCccccccCcccccCccccEEECcCCcccccCHHHhcCccccCeeECCCCcCCccChhhccccc
Confidence            44455555555555555443333333333333555555555555443333445555555555555555544444455555


Q ss_pred             CCCEEeCCCCcccccCCccccCCCCCcEEeCCCCccccCCCcCCcCCCCCcEEEcCCCccC
Q 037302          260 YLDSLSLDGNNLIGSIPPTIGYLTNLTSLNLGYNQLSSSIPPELMNCSQLQNLVLSHNTLS  320 (408)
Q Consensus       260 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~  320 (408)
                      +|+.|++++|.+....+..+..+++|++|++++|.++...+..+..+++|++|++++|++.
T Consensus       273 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~  333 (477)
T 2id5_A          273 RLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSVGNLETLILDSNPLA  333 (477)
T ss_dssp             TCCEEECCSSCCSEECTTTBTTCTTCCEEECCSSCCSCCCGGGBSCGGGCCEEECCSSCEE
T ss_pred             cCCEEECCCCccceECHHHhcCcccCCEEECCCCcCceeCHhHcCCCcccCEEEccCCCcc
Confidence            5555555555555444445555555555555555555444444455555555555555543

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=100.00  E-value=1.9e-34  Score=279.20  Aligned_cols=376  Identities=21%  Similarity=0.204  Sum_probs=281.2

Q ss_pred             CCCCCCcEEEcCCCccccccchhhccCCCCcEEeCCCCcCCCCCcccccCCCCCcEEeCCCceecccCcccccCCCCCce
Q 037302           16 TCFPNLESIIIPYTLLSGRIPSEIGALSKLEELALPYNSLTGTIPAEIGSLRNLVELDLSNNILNGSIPLEFGNLKDLDA   95 (408)
Q Consensus        16 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~   95 (408)
                      ..+...++++++++.+.+ +|..+.  ++|++|++++|.++...+..|.++++|++|++++|.+.+..+..|.++++|++
T Consensus        28 ~~~~~~~~l~ls~~~L~~-ip~~~~--~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~  104 (562)
T 3a79_B           28 FSNELESMVDYSNRNLTH-VPKDLP--PRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEY  104 (562)
T ss_dssp             -----CCEEECTTSCCCS-CCTTSC--TTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCE
T ss_pred             cccCCCcEEEcCCCCCcc-CCCCCC--CCcCEEECCCCCccccChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCE
Confidence            445566899999999884 665454  79999999999999877789999999999999999999888899999999999


Q ss_pred             eecCCccccccCCCcCCCCCCCCEEEcCCCeeccc-CcccccCCCCCceEeccCCcccCcCchhhccCCCC--CEEEcCC
Q 037302           96 LRLRGNKLDGLIPSSIGNLTNLTHLDLSLNQLSGR-LPQEVGNLKNLLSLFLDNNNLTGPIPSTLYHLNQL--SNLYLAY  172 (408)
Q Consensus        96 L~l~~~~i~~~~~~~l~~l~~L~~L~l~~~~~~~~-~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L--~~L~l~~  172 (408)
                      |++++|.++.++..   .+++|++|++++|.+... .+..+..+++|++|+++++.+...   .+..+++|  +.+++++
T Consensus       105 L~Ls~N~l~~lp~~---~l~~L~~L~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~~~---~~~~l~~L~L~~L~L~~  178 (562)
T 3a79_B          105 LDVSHNRLQNISCC---PMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQL---DLLPVAHLHLSCILLDL  178 (562)
T ss_dssp             EECTTSCCCEECSC---CCTTCSEEECCSSCCSBCCCCGGGGGCTTCCEEEEECSBCCTT---TTGGGTTSCEEEEEEEE
T ss_pred             EECCCCcCCccCcc---ccccCCEEECCCCCccccCchHhhcccCcccEEecCCCccccC---chhhhhhceeeEEEeec
Confidence            99999999865444   799999999999999853 347899999999999999988753   44555666  9999998


Q ss_pred             CcC--CCCCCcccc--------------------------CCCCCCEEEecCcc--------------------------
Q 037302          173 NNL--VGPLPKEVG--------------------------NMKNLDSLLLNRNS--------------------------  198 (408)
Q Consensus       173 ~~~--~~~~~~~~~--------------------------~~~~L~~L~l~~~~--------------------------  198 (408)
                      |.+  ....+..+.                          .+++|+.+++++|.                          
T Consensus       179 n~l~~~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~l~~~~~~l~~l~~L~~L~L~~  258 (562)
T 3a79_B          179 VSYHIKGGETESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQH  258 (562)
T ss_dssp             SSCCCCSSSCCEEEECCEEEEEEEECSSSCCCCCCEEEESSEEEEEEEEEECCSTTHHHHHHHHHHHHSCSSCEEEEEEE
T ss_pred             ccccccccCcccccccCcceEEEEecCccchhhhhhhcccccceEEEecccccccccchHHHHHHHHhccCcceEEEecC
Confidence            877  433333333                          34456666666542                          


Q ss_pred             --ccccc-C--cccccccccCeEEccCCcCCCCCCccc-----CCCC--------------------------CccEEEc
Q 037302          199 --LTGPI-P--STIGYLNLGGKLDLSHNRLDSPIPPTI-----GNLT--------------------------NLTSLDL  242 (408)
Q Consensus       199 --~~~~~-~--~~~~~~~~L~~l~l~~~~~~~~~~~~l-----~~~~--------------------------~L~~L~l  242 (408)
                        +.+.. .  ......+.|++++++++.+.+..+..+     ..++                          +|++|++
T Consensus       259 ~~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~ip~~~~~~~~~~L~~L~~~~~~~~~~~~p~~~~~~~~~~~~L~~L~l  338 (562)
T 3a79_B          259 IETTWKCSVKLFQFFWPRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAEMNIKMLSI  338 (562)
T ss_dssp             EEECHHHHHHHHHHHTTSSEEEEEEEEEEECSCCCCCCCCCCSCSCCEEEEEEEEECCCSSCHHHHHHHHHTCCCSEEEE
T ss_pred             CcCcHHHHHHHHHhhhcccccEEEEeccEeeccccchhhhcccccchheehhhcccceeecChhhhhhhhccCcceEEEc
Confidence              10000 0  000112378889998888775555444     2222                          3556666


Q ss_pred             cCCcccccCCccccCCCCCCEEeCCCCcccccCCccccCCCCCcEEeCCCCccccCC--CcCCcCCCCCcEEEcCCCccC
Q 037302          243 SSNQLSGLLPREVGNLKYLDSLSLDGNNLIGSIPPTIGYLTNLTSLNLGYNQLSSSI--PPELMNCSQLQNLVLSHNTLS  320 (408)
Q Consensus       243 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~--~~~~~~~~~L~~L~l~~~~~~  320 (408)
                      ++|.+....  ....+++|++|++++|.+.+..+..+..+++|++|++++|.++...  +..+.++++|++|++++|.+.
T Consensus       339 ~~n~~~~~~--~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N~l~  416 (562)
T 3a79_B          339 SDTPFIHMV--CPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLN  416 (562)
T ss_dssp             ESSCCCCCC--CCSSCCCCCEEECCSSCCCTTTTTTCCSCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECTTSCCB
T ss_pred             cCCCccccc--CccCCCCceEEECCCCccccchhhhhcccCCCCEEECCCCCcCCcccchhhhcCCCCCCEEECCCCcCC
Confidence            665544221  1257789999999999988777778889999999999999988533  345788999999999999988


Q ss_pred             C-cCCcccccCCCccEEEcCCccccccCCcCCCCCCCccEEeCCCCccCCcCCcc--ccCCCeEEccCCccCCCCCCC-c
Q 037302          321 G-IVPPEIGNLTHLRQLDLSHNFINGTIPSQLGYIPNISAVDLSKNNLSGVVPAS--VRIIPKLIVSENNLELENSTS-S  396 (408)
Q Consensus       321 ~-~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~--~~~l~~l~l~~n~~~~~~~~~-~  396 (408)
                      + .....+..+++|++|++++|++++..+..+.  ++|+.|++++|+++.+.+..  +.++++|++++|+++ .+|.. +
T Consensus       417 ~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~--~~L~~L~L~~N~l~~ip~~~~~l~~L~~L~L~~N~l~-~l~~~~~  493 (562)
T 3a79_B          417 SHAYDRTCAWAESILVLNLSSNMLTGSVFRCLP--PKVKVLDLHNNRIMSIPKDVTHLQALQELNVASNQLK-SVPDGVF  493 (562)
T ss_dssp             SCCSSCCCCCCTTCCEEECCSSCCCGGGGSSCC--TTCSEEECCSSCCCCCCTTTTSSCCCSEEECCSSCCC-CCCTTST
T ss_pred             CccChhhhcCcccCCEEECCCCCCCcchhhhhc--CcCCEEECCCCcCcccChhhcCCCCCCEEECCCCCCC-CCCHHHH
Confidence            7 4445678889999999999999876665543  78999999999998655433  346779999999998 67776 8


Q ss_pred             CCCCCCCCC
Q 037302          397 ENAPPPQAK  405 (408)
Q Consensus       397 ~~~~~~~~~  405 (408)
                      ..++.|+.+
T Consensus       494 ~~l~~L~~L  502 (562)
T 3a79_B          494 DRLTSLQYI  502 (562)
T ss_dssp             TTCTTCCCE
T ss_pred             hcCCCCCEE
Confidence            888887654

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=100.00  E-value=5.1e-34  Score=280.66  Aligned_cols=384  Identities=21%  Similarity=0.209  Sum_probs=221.6

Q ss_pred             CCcEEEcCCCccccccchhhccCCCCcEEeCCCCcCCCCCcccccCCCCCcEEeCCCceecccCcccccCCCCCceeecC
Q 037302           20 NLESIIIPYTLLSGRIPSEIGALSKLEELALPYNSLTGTIPAEIGSLRNLVELDLSNNILNGSIPLEFGNLKDLDALRLR   99 (408)
Q Consensus        20 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~   99 (408)
                      ++++|+|+++.+.+..+..|..+++|++|++++|.++.+.+.+|.++++|++|++++|++....+..|.++++|++|+++
T Consensus        53 ~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~~l~~~~f~~L~~L~~L~Ls  132 (635)
T 4g8a_A           53 STKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAV  132 (635)
T ss_dssp             TCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECGGGGTTCTTCCEEECT
T ss_pred             CCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCCCCCHHHhcCCCCCCEEECC
Confidence            56666666666665555556666666666666666665555566666666666666666654455556666666666666


Q ss_pred             CccccccCCCcCCCCCCCCEEEcCCCeeccc-CcccccCCCCCceEeccCCcccCcCchhhccCCCCC----EEEcCCCc
Q 037302          100 GNKLDGLIPSSIGNLTNLTHLDLSLNQLSGR-LPQEVGNLKNLLSLFLDNNNLTGPIPSTLYHLNQLS----NLYLAYNN  174 (408)
Q Consensus       100 ~~~i~~~~~~~l~~l~~L~~L~l~~~~~~~~-~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~----~L~l~~~~  174 (408)
                      +|.++.+.+..|.++++|++|++++|.+... .+..+..+++|++|++++|.++...+..+..+.+++    .++++.+.
T Consensus       133 ~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~L~~l~~~~~~~~ls~n~  212 (635)
T 4g8a_A          133 ETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNP  212 (635)
T ss_dssp             TSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCCEEECTTCC
T ss_pred             CCcCCCCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCccccccccccccchhhhhhhhhhhhcccCc
Confidence            6666655555566666666666666665432 344455566666666666655433333222211111    11111111


Q ss_pred             CCC------------------------------------------------------C----------------------
Q 037302          175 LVG------------------------------------------------------P----------------------  178 (408)
Q Consensus       175 ~~~------------------------------------------------------~----------------------  178 (408)
                      +..                                                      .                      
T Consensus       213 l~~i~~~~~~~~~~~~l~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~~~~l~~~~l~~~~~~  292 (635)
T 4g8a_A          213 MNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLD  292 (635)
T ss_dssp             CCEECTTTTTTCEEEEEEEESCCSSHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCTTTTGGGGGSEEEEEEEECCC
T ss_pred             ccccCcccccchhhhhhhhhcccccccccchhhcCCcccccccccccccccccccccccccccccccchhhhhhhhhhhc
Confidence            100                                                      0                      


Q ss_pred             -----CCccccCCCCCCEEEecCcccccccCcccccccccCeEEccCCcCCCCC-------------------CcccCCC
Q 037302          179 -----LPKEVGNMKNLDSLLLNRNSLTGPIPSTIGYLNLGGKLDLSHNRLDSPI-------------------PPTIGNL  234 (408)
Q Consensus       179 -----~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~-------------------~~~l~~~  234 (408)
                           ....+....+++.+.+.++.+...  ..+.....++.+.+.++.+....                   ......+
T Consensus       293 ~~~~~~~~~~~~~~~l~~l~~~~~~~~~~--~~~~~~~~L~~L~l~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~l  370 (635)
T 4g8a_A          293 YYLDGIIDLFNCLTNVSSFSLVSVTIERV--KDFSYNFGWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAFSEVDL  370 (635)
T ss_dssp             SCEEECTTTTGGGTTCSEEEEESCEEEEC--GGGGSCCCCSEEEEESCEESSCCCCBCTTCCEEEEESCCSCCBCCCCBC
T ss_pred             ccccchhhhhhhhcccccccccccccccc--cccccchhhhhhhcccccccCcCcccchhhhhcccccccCCCCcccccc
Confidence                 000011112223333222222110  11222223333333332211110                   0111234


Q ss_pred             CCccEEEccCCcccc-------------------------cCCccccCCCCCCEEeCCCCccccc-CCccccCCCCCcEE
Q 037302          235 TNLTSLDLSSNQLSG-------------------------LLPREVGNLKYLDSLSLDGNNLIGS-IPPTIGYLTNLTSL  288 (408)
Q Consensus       235 ~~L~~L~l~~~~~~~-------------------------~~~~~~~~~~~L~~L~l~~~~~~~~-~~~~~~~~~~L~~L  288 (408)
                      ++|+.++++++.+..                         .....+..+++|+.+++.++..... ....+..+++++.+
T Consensus       371 ~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~l~~l~~l  450 (635)
T 4g8a_A          371 PSLEFLDLSRNGLSFKGCCSQSDFGTISLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYL  450 (635)
T ss_dssp             TTCCEEECCSSCCBEEEECCHHHHSCSCCCEEECCSCSEEEECSCCTTCTTCCEEECTTSEEESTTSSCTTTTCTTCCEE
T ss_pred             cccccchhhccccccccccccchhhhhhhhhhhccccccccccccccccccccchhhhhccccccccccccccccccccc
Confidence            455555555543321                         1122344556677777766655433 23456677788888


Q ss_pred             eCCCCccccCCCcCCcCCCCCcEEEcCCCcc-CCcCCcccccCCCccEEEcCCccccccCCcCCCCCCCccEEeCCCCcc
Q 037302          289 NLGYNQLSSSIPPELMNCSQLQNLVLSHNTL-SGIVPPEIGNLTHLRQLDLSHNFINGTIPSQLGYIPNISAVDLSKNNL  367 (408)
Q Consensus       289 ~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~-~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l  367 (408)
                      +++.|.+....+..+..++.|+.|++++|.+ ....+..+..+++|++|++++|++++..|..|.++++|+.|++++|++
T Consensus       451 ~ls~n~l~~~~~~~~~~~~~L~~L~Ls~N~~~~~~~~~~~~~l~~L~~L~Ls~N~L~~l~~~~f~~l~~L~~L~Ls~N~l  530 (635)
T 4g8a_A          451 DISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNF  530 (635)
T ss_dssp             ECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCC
T ss_pred             cccccccccccccccccchhhhhhhhhhcccccccCchhhhhccccCEEECCCCccCCcChHHHcCCCCCCEEECCCCcC
Confidence            8888888777777777888888888888864 335667788888888888888888877788888888888888888888


Q ss_pred             CCcCCcccc---CCCeEEccCCccCCCCCCCcCCCC-CCCCC
Q 037302          368 SGVVPASVR---IIPKLIVSENNLELENSTSSENAP-PPQAK  405 (408)
Q Consensus       368 ~~~~~~~~~---~l~~l~l~~n~~~~~~~~~~~~~~-~~~~~  405 (408)
                      +++.|..+.   +|++|++++|++++.+|..++.++ .|+.+
T Consensus       531 ~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~~L~~L  572 (635)
T 4g8a_A          531 FSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFL  572 (635)
T ss_dssp             CBCCCGGGTTCTTCCEEECTTSCCCBCCSSCTTCCCTTCCEE
T ss_pred             CCCChhHHhCCCCCCEEECCCCcCCCCCHHHHHhhhCcCCEE
Confidence            888877665   456888888888888888888773 46543

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}

Probab=100.00  E-value=1.9e-33  Score=263.87  Aligned_cols=350  Identities=22%  Similarity=0.213  Sum_probs=252.1

Q ss_pred             cccccccCCCCCCcEEEcCCCccccccchhhccCCCCcEEeCCCCcCCCCCcccccCCCCCcEEeCCCceecccCccccc
Q 037302            9 ELSQLNFTCFPNLESIIIPYTLLSGRIPSEIGALSKLEELALPYNSLTGTIPAEIGSLRNLVELDLSNNILNGSIPLEFG   88 (408)
Q Consensus         9 ~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~   88 (408)
                      ......+.++++|++|+++++.+.+. | .+..+++|++|++++|.+++.   .+..+++|++|++++|.+.+. +  +.
T Consensus        32 ~~~~~~~~~l~~L~~L~Ls~n~l~~~-~-~l~~l~~L~~L~Ls~n~l~~~---~~~~l~~L~~L~Ls~N~l~~~-~--~~  103 (457)
T 3bz5_A           32 ATDTISEEQLATLTSLDCHNSSITDM-T-GIEKLTGLTKLICTSNNITTL---DLSQNTNLTYLACDSNKLTNL-D--VT  103 (457)
T ss_dssp             TTSEEEHHHHTTCCEEECCSSCCCCC-T-TGGGCTTCSEEECCSSCCSCC---CCTTCTTCSEEECCSSCCSCC-C--CT
T ss_pred             cccccChhHcCCCCEEEccCCCcccC-h-hhcccCCCCEEEccCCcCCeE---ccccCCCCCEEECcCCCCcee-e--cC
Confidence            34445677889999999999988864 4 588999999999999988754   288899999999999988753 3  78


Q ss_pred             CCCCCceeecCCccccccCCCcCCCCCCCCEEEcCCCeecccCcccccCCCCCceEeccCCcccCcCchhhccCCCCCEE
Q 037302           89 NLKDLDALRLRGNKLDGLIPSSIGNLTNLTHLDLSLNQLSGRLPQEVGNLKNLLSLFLDNNNLTGPIPSTLYHLNQLSNL  168 (408)
Q Consensus        89 ~l~~L~~L~l~~~~i~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L  168 (408)
                      .+++|++|++++|.++.+   .+..+++|++|++++|.+...   .+..+++|++|++++|......  .+..+++|+.|
T Consensus       104 ~l~~L~~L~L~~N~l~~l---~~~~l~~L~~L~l~~N~l~~l---~l~~l~~L~~L~l~~n~~~~~~--~~~~l~~L~~L  175 (457)
T 3bz5_A          104 PLTKLTYLNCDTNKLTKL---DVSQNPLLTYLNCARNTLTEI---DVSHNTQLTELDCHLNKKITKL--DVTPQTQLTTL  175 (457)
T ss_dssp             TCTTCCEEECCSSCCSCC---CCTTCTTCCEEECTTSCCSCC---CCTTCTTCCEEECTTCSCCCCC--CCTTCTTCCEE
T ss_pred             CCCcCCEEECCCCcCCee---cCCCCCcCCEEECCCCcccee---ccccCCcCCEEECCCCCccccc--ccccCCcCCEE
Confidence            899999999999988765   278899999999999988753   3778899999999988533233  46778999999


Q ss_pred             EcCCCcCCCCCCccccCCCCCCEEEecCcccccccCcccccccccCeEEccCCcCCCCCCcccCCCCCccEEEccCCccc
Q 037302          169 YLAYNNLVGPLPKEVGNMKNLDSLLLNRNSLTGPIPSTIGYLNLGGKLDLSHNRLDSPIPPTIGNLTNLTSLDLSSNQLS  248 (408)
Q Consensus       169 ~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~  248 (408)
                      ++++|.+... +  +..+++|+.|++++|.+.+.   .+..++.|+.+++++|++.+. +  +..+++|+.|++++|.+.
T Consensus       176 ~ls~n~l~~l-~--l~~l~~L~~L~l~~N~l~~~---~l~~l~~L~~L~Ls~N~l~~i-p--~~~l~~L~~L~l~~N~l~  246 (457)
T 3bz5_A          176 DCSFNKITEL-D--VSQNKLLNRLNCDTNNITKL---DLNQNIQLTFLDCSSNKLTEI-D--VTPLTQLTYFDCSVNPLT  246 (457)
T ss_dssp             ECCSSCCCCC-C--CTTCTTCCEEECCSSCCSCC---CCTTCTTCSEEECCSSCCSCC-C--CTTCTTCSEEECCSSCCS
T ss_pred             ECCCCcccee-c--cccCCCCCEEECcCCcCCee---ccccCCCCCEEECcCCccccc-C--ccccCCCCEEEeeCCcCC
Confidence            9999988753 3  78889999999999988754   477889999999999988763 3  778889999999999887


Q ss_pred             ccCCccccCCCCCCEEeCCCCcccccC--------CccccCCCCCcEEeCCCCccccCCCc--------CCcCCCCCcEE
Q 037302          249 GLLPREVGNLKYLDSLSLDGNNLIGSI--------PPTIGYLTNLTSLNLGYNQLSSSIPP--------ELMNCSQLQNL  312 (408)
Q Consensus       249 ~~~~~~~~~~~~L~~L~l~~~~~~~~~--------~~~~~~~~~L~~L~l~~~~~~~~~~~--------~~~~~~~L~~L  312 (408)
                      +..   +..+++|+.|+++++.+....        ...+..+++|+.|++++|...+..+.        .+.++++|++|
T Consensus       247 ~~~---~~~l~~L~~L~l~~n~L~~L~l~~n~~~~~~~~~~l~~L~~L~Ls~n~~l~~l~~~~~~L~~L~l~~~~~L~~L  323 (457)
T 3bz5_A          247 ELD---VSTLSKLTTLHCIQTDLLEIDLTHNTQLIYFQAEGCRKIKELDVTHNTQLYLLDCQAAGITELDLSQNPKLVYL  323 (457)
T ss_dssp             CCC---CTTCTTCCEEECTTCCCSCCCCTTCTTCCEEECTTCTTCCCCCCTTCTTCCEEECTTCCCSCCCCTTCTTCCEE
T ss_pred             CcC---HHHCCCCCEEeccCCCCCEEECCCCccCCcccccccccCCEEECCCCcccceeccCCCcceEechhhcccCCEE
Confidence            543   334556665555544332110        01134567777777777754322111        24445666666


Q ss_pred             EcCCCccCCcCCcccccCCCccEEEcCCccccccCCcCCCCCCCccEEeCCCCccCCcCCccccCCCeEEccCCccCCCC
Q 037302          313 VLSHNTLSGIVPPEIGNLTHLRQLDLSHNFINGTIPSQLGYIPNISAVDLSKNNLSGVVPASVRIIPKLIVSENNLELEN  392 (408)
Q Consensus       313 ~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~l~l~~n~~~~~~  392 (408)
                      ++++|++++.   .+..+++|+.|++++|++++        ++.|+.|.+++|.+.|.  .....+..+++++|.++|.|
T Consensus       324 ~L~~N~l~~l---~l~~l~~L~~L~l~~N~l~~--------l~~L~~L~l~~n~l~g~--~~~~~l~~l~l~~N~l~g~i  390 (457)
T 3bz5_A          324 YLNNTELTEL---DVSHNTKLKSLSCVNAHIQD--------FSSVGKIPALNNNFEAE--GQTITMPKETLTNNSLTIAV  390 (457)
T ss_dssp             ECTTCCCSCC---CCTTCTTCSEEECCSSCCCB--------CTTGGGSSGGGTSEEEE--EEEEECCCBCCBTTBEEEEC
T ss_pred             ECCCCccccc---ccccCCcCcEEECCCCCCCC--------ccccccccccCCcEEec--ceeeecCccccccCcEEEEc
Confidence            6666666543   25556666666666666553        23445555555555543  23345668899999999999


Q ss_pred             CCCcCCC
Q 037302          393 STSSENA  399 (408)
Q Consensus       393 ~~~~~~~  399 (408)
                      |..+...
T Consensus       391 p~~~~~~  397 (457)
T 3bz5_A          391 SPDLLDQ  397 (457)
T ss_dssp             CTTCBCT
T ss_pred             ChhHhcc
Confidence            9887554

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=100.00  E-value=6.3e-33  Score=252.44  Aligned_cols=305  Identities=30%  Similarity=0.396  Sum_probs=140.3

Q ss_pred             ccCCCCcEEeCCCCcCCCCCcccccCCCCCcEEeCCCceecccCcccccCCCCCceeecCCccccccCCCcCCCCCCCCE
Q 037302           40 GALSKLEELALPYNSLTGTIPAEIGSLRNLVELDLSNNILNGSIPLEFGNLKDLDALRLRGNKLDGLIPSSIGNLTNLTH  119 (408)
Q Consensus        40 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~l~~l~~L~~  119 (408)
                      ..+++|++|+++++.+...  ..+..+++|++|++++|.+.+..+  +..+++|++|++++|.+...  ..+..+++|++
T Consensus        41 ~~l~~L~~L~l~~~~i~~~--~~~~~~~~L~~L~l~~n~i~~~~~--~~~l~~L~~L~L~~n~i~~~--~~~~~l~~L~~  114 (347)
T 4fmz_A           41 EELESITKLVVAGEKVASI--QGIEYLTNLEYLNLNGNQITDISP--LSNLVKLTNLYIGTNKITDI--SALQNLTNLRE  114 (347)
T ss_dssp             HHHTTCSEEECCSSCCCCC--TTGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCC--GGGTTCTTCSE
T ss_pred             hhcccccEEEEeCCccccc--hhhhhcCCccEEEccCCccccchh--hhcCCcCCEEEccCCcccCc--hHHcCCCcCCE
Confidence            3455555566655555422  224555555555555555543222  55555566666655555432  23555555555


Q ss_pred             EEcCCCeecccCcccccCCCCCceEeccCCcccCcCchhhccCCCCCEEEcCCCcCCCCCCccccCCCCCCEEEecCccc
Q 037302          120 LDLSLNQLSGRLPQEVGNLKNLLSLFLDNNNLTGPIPSTLYHLNQLSNLYLAYNNLVGPLPKEVGNMKNLDSLLLNRNSL  199 (408)
Q Consensus       120 L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~  199 (408)
                      |++++|.+....  .+..+++|+++++++|..... ...+..+++|++|++++|.+.....  +..+++|++|++++|.+
T Consensus       115 L~l~~n~i~~~~--~~~~l~~L~~L~l~~n~~~~~-~~~~~~l~~L~~L~l~~~~~~~~~~--~~~l~~L~~L~l~~n~l  189 (347)
T 4fmz_A          115 LYLNEDNISDIS--PLANLTKMYSLNLGANHNLSD-LSPLSNMTGLNYLTVTESKVKDVTP--IANLTDLYSLSLNYNQI  189 (347)
T ss_dssp             EECTTSCCCCCG--GGTTCTTCCEEECTTCTTCCC-CGGGTTCTTCCEEECCSSCCCCCGG--GGGCTTCSEEECTTSCC
T ss_pred             EECcCCcccCch--hhccCCceeEEECCCCCCccc-ccchhhCCCCcEEEecCCCcCCchh--hccCCCCCEEEccCCcc
Confidence            555555554321  145555555555555533222 2224455555555555555432211  44555555555555544


Q ss_pred             ccccCcccccccccCeEEccCCcCCCCCCcccCCCCCccEEEccCCcccccCCccccCCCCCCEEeCCCCcccccCCccc
Q 037302          200 TGPIPSTIGYLNLGGKLDLSHNRLDSPIPPTIGNLTNLTSLDLSSNQLSGLLPREVGNLKYLDSLSLDGNNLIGSIPPTI  279 (408)
Q Consensus       200 ~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~  279 (408)
                      .+...  +..++.|+.++++++.+....+  +..+++|++|++++|.+.+...  +..+++|++|++++|.+...  ..+
T Consensus       190 ~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~~~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~--~~~  261 (347)
T 4fmz_A          190 EDISP--LASLTSLHYFTAYVNQITDITP--VANMTRLNSLKIGNNKITDLSP--LANLSQLTWLEIGTNQISDI--NAV  261 (347)
T ss_dssp             CCCGG--GGGCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCC--GGG
T ss_pred             ccccc--ccCCCccceeecccCCCCCCch--hhcCCcCCEEEccCCccCCCcc--hhcCCCCCEEECCCCccCCC--hhH
Confidence            32211  3444444444444444433221  3344445555555544442211  34444444444444444321  233


Q ss_pred             cCCCCCcEEeCCCCccccCCCcCCcCCCCCcEEEcCCCccCCcCCcccccCCCccEEEcCCccccccCCcCCCCCCCccE
Q 037302          280 GYLTNLTSLNLGYNQLSSSIPPELMNCSQLQNLVLSHNTLSGIVPPEIGNLTHLRQLDLSHNFINGTIPSQLGYIPNISA  359 (408)
Q Consensus       280 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~  359 (408)
                      ..+++|++|++++|.+++.  ..+..+++|++|++++|.+.+..+..+..+++|++|++++|++++..|  +..+++|+.
T Consensus       262 ~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~  337 (347)
T 4fmz_A          262 KDLTKLKMLNVGSNQISDI--SVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRP--LASLSKMDS  337 (347)
T ss_dssp             TTCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCGGGHHHHHTCTTCSEEECCSSSCCCCGG--GGGCTTCSE
T ss_pred             hcCCCcCEEEccCCccCCC--hhhcCCCCCCEEECcCCcCCCcChhHhhccccCCEEEccCCccccccC--hhhhhccce
Confidence            4444444444444444422  223444444444444444443333444444444444444444443333  334444444


Q ss_pred             EeCCCCcc
Q 037302          360 VDLSKNNL  367 (408)
Q Consensus       360 L~l~~~~l  367 (408)
                      |++++|++
T Consensus       338 L~l~~N~i  345 (347)
T 4fmz_A          338 ADFANQVI  345 (347)
T ss_dssp             ESSSCC--
T ss_pred             eehhhhcc
Confidence            44444444

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=100.00  E-value=3.3e-33  Score=258.26  Aligned_cols=312  Identities=24%  Similarity=0.192  Sum_probs=243.2

Q ss_pred             cCCCCcEEeCCCCcCCCCCcccccCCCCCcEEeCCCceecccCcccccCCCCCceeecCCccccccCCCcCCCCCCCCEE
Q 037302           41 ALSKLEELALPYNSLTGTIPAEIGSLRNLVELDLSNNILNGSIPLEFGNLKDLDALRLRGNKLDGLIPSSIGNLTNLTHL  120 (408)
Q Consensus        41 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~l~~l~~L~~L  120 (408)
                      .+++++.|++.++.++...+..+..+++|++|+++++.+....+..|..+++|++|++++|.+..+.+..+..+++|++|
T Consensus        43 ~l~~l~~l~l~~~~l~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L  122 (390)
T 3o6n_A           43 TLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVL  122 (390)
T ss_dssp             GGCCCSEEEEESCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred             ccCCceEEEecCCchhhCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEE
Confidence            46788999999888876655667888999999999998887777788889999999999998887888888889999999


Q ss_pred             EcCCCeecccCcccccCCCCCceEeccCCcccCcCchhhccCCCCCEEEcCCCcCCCCCCccccCCCCCCEEEecCcccc
Q 037302          121 DLSLNQLSGRLPQEVGNLKNLLSLFLDNNNLTGPIPSTLYHLNQLSNLYLAYNNLVGPLPKEVGNMKNLDSLLLNRNSLT  200 (408)
Q Consensus       121 ~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~  200 (408)
                      ++++|.+.......+..+++|++|++++|.+....+..+..+++|++|++++|.+...   .+..+++|+.+++++|.+.
T Consensus       123 ~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~---~~~~l~~L~~L~l~~n~l~  199 (390)
T 3o6n_A          123 VLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHV---DLSLIPSLFHANVSYNLLS  199 (390)
T ss_dssp             ECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSBC---CGGGCTTCSEEECCSSCCS
T ss_pred             ECCCCccCcCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcCCcc---ccccccccceeeccccccc
Confidence            9999988855555567888999999999888876677788888999999988887643   3567788888888887665


Q ss_pred             cccCcccccccccCeEEccCCcCCCCCCcccCCCCCccEEEccCCcccccCCccccCCCCCCEEeCCCCcccccCCcccc
Q 037302          201 GPIPSTIGYLNLGGKLDLSHNRLDSPIPPTIGNLTNLTSLDLSSNQLSGLLPREVGNLKYLDSLSLDGNNLIGSIPPTIG  280 (408)
Q Consensus       201 ~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~  280 (408)
                      .     +...+.++.++++++.+.....   ...++|+.|++++|.+.+.  ..+..+++|++|++++|.+....+..+.
T Consensus       200 ~-----~~~~~~L~~L~l~~n~l~~~~~---~~~~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~Ls~n~l~~~~~~~~~  269 (390)
T 3o6n_A          200 T-----LAIPIAVEELDASHNSINVVRG---PVNVELTILKLQHNNLTDT--AWLLNYPGLVEVDLSYNELEKIMYHPFV  269 (390)
T ss_dssp             E-----EECCSSCSEEECCSSCCCEEEC---CCCSSCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCEEESGGGT
T ss_pred             c-----cCCCCcceEEECCCCeeeeccc---cccccccEEECCCCCCccc--HHHcCCCCccEEECCCCcCCCcChhHcc
Confidence            2     3445678888888887764322   2246788888888887743  4677788888888888888766677778


Q ss_pred             CCCCCcEEeCCCCccccCCCcCCcCCCCCcEEEcCCCccCCcCCcccccCCCccEEEcCCccccccCCcCCCCCCCccEE
Q 037302          281 YLTNLTSLNLGYNQLSSSIPPELMNCSQLQNLVLSHNTLSGIVPPEIGNLTHLRQLDLSHNFINGTIPSQLGYIPNISAV  360 (408)
Q Consensus       281 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L  360 (408)
                      .+++|++|++++|.++. .+..+..+++|++|++++|++. ..+..+..+++|++|++++|++++. +  +..+++|+.|
T Consensus       270 ~l~~L~~L~L~~n~l~~-~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~l~~L~~L~L~~N~i~~~-~--~~~~~~L~~L  344 (390)
T 3o6n_A          270 KMQRLERLYISNNRLVA-LNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIVTL-K--LSTHHTLKNL  344 (390)
T ss_dssp             TCSSCCEEECCSSCCCE-EECSSSCCTTCCEEECCSSCCC-CCGGGHHHHTTCSEEECCSSCCCCC-C--CCTTCCCSEE
T ss_pred             ccccCCEEECCCCcCcc-cCcccCCCCCCCEEECCCCcce-ecCccccccCcCCEEECCCCcccee-C--chhhccCCEE
Confidence            88888888888888874 3444566788888888888877 3455567778888888888888744 2  5667888888


Q ss_pred             eCCCCccCCc
Q 037302          361 DLSKNNLSGV  370 (408)
Q Consensus       361 ~l~~~~l~~~  370 (408)
                      ++++|++...
T Consensus       345 ~l~~N~~~~~  354 (390)
T 3o6n_A          345 TLSHNDWDCN  354 (390)
T ss_dssp             ECCSSCEEHH
T ss_pred             EcCCCCccch
Confidence            8888888654

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=100.00  E-value=8.7e-33  Score=251.52  Aligned_cols=308  Identities=26%  Similarity=0.413  Sum_probs=260.9

Q ss_pred             ccccCCCCCcEEeCCCceecccCcccccCCCCCceeecCCccccccCCCcCCCCCCCCEEEcCCCeecccCcccccCCCC
Q 037302           61 AEIGSLRNLVELDLSNNILNGSIPLEFGNLKDLDALRLRGNKLDGLIPSSIGNLTNLTHLDLSLNQLSGRLPQEVGNLKN  140 (408)
Q Consensus        61 ~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~  140 (408)
                      ..+..+++|+.|+++++.+.. .+ .+..+++|++|++++|.+..+.+  +..+++|++|++++|.+...  ..+..+++
T Consensus        38 ~~~~~l~~L~~L~l~~~~i~~-~~-~~~~~~~L~~L~l~~n~i~~~~~--~~~l~~L~~L~L~~n~i~~~--~~~~~l~~  111 (347)
T 4fmz_A           38 VTQEELESITKLVVAGEKVAS-IQ-GIEYLTNLEYLNLNGNQITDISP--LSNLVKLTNLYIGTNKITDI--SALQNLTN  111 (347)
T ss_dssp             ECHHHHTTCSEEECCSSCCCC-CT-TGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCC--GGGTTCTT
T ss_pred             ccchhcccccEEEEeCCcccc-ch-hhhhcCCccEEEccCCccccchh--hhcCCcCCEEEccCCcccCc--hHHcCCCc
Confidence            345678899999999999874 33 47889999999999999886644  88999999999999988753  46889999


Q ss_pred             CceEeccCCcccCcCchhhccCCCCCEEEcCCCcCCCCCCccccCCCCCCEEEecCcccccccCcccccccccCeEEccC
Q 037302          141 LLSLFLDNNNLTGPIPSTLYHLNQLSNLYLAYNNLVGPLPKEVGNMKNLDSLLLNRNSLTGPIPSTIGYLNLGGKLDLSH  220 (408)
Q Consensus       141 L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~  220 (408)
                      |++|+++++.+....  .+..+++|+.+++++|...... ..+..+++|+.|++++|.+.+...  +..++.|+.+++++
T Consensus       112 L~~L~l~~n~i~~~~--~~~~l~~L~~L~l~~n~~~~~~-~~~~~l~~L~~L~l~~~~~~~~~~--~~~l~~L~~L~l~~  186 (347)
T 4fmz_A          112 LRELYLNEDNISDIS--PLANLTKMYSLNLGANHNLSDL-SPLSNMTGLNYLTVTESKVKDVTP--IANLTDLYSLSLNY  186 (347)
T ss_dssp             CSEEECTTSCCCCCG--GGTTCTTCCEEECTTCTTCCCC-GGGTTCTTCCEEECCSSCCCCCGG--GGGCTTCSEEECTT
T ss_pred             CCEEECcCCcccCch--hhccCCceeEEECCCCCCcccc-cchhhCCCCcEEEecCCCcCCchh--hccCCCCCEEEccC
Confidence            999999999988543  2788999999999999665444 348899999999999998875433  78899999999999


Q ss_pred             CcCCCCCCcccCCCCCccEEEccCCcccccCCccccCCCCCCEEeCCCCcccccCCccccCCCCCcEEeCCCCccccCCC
Q 037302          221 NRLDSPIPPTIGNLTNLTSLDLSSNQLSGLLPREVGNLKYLDSLSLDGNNLIGSIPPTIGYLTNLTSLNLGYNQLSSSIP  300 (408)
Q Consensus       221 ~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~  300 (408)
                      |.+....+  +..+++|+.+++++|.+.+...  +..+++|++|++++|.+.....  +..+++|++|++++|.++..  
T Consensus       187 n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~~~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~--  258 (347)
T 4fmz_A          187 NQIEDISP--LASLTSLHYFTAYVNQITDITP--VANMTRLNSLKIGNNKITDLSP--LANLSQLTWLEIGTNQISDI--  258 (347)
T ss_dssp             SCCCCCGG--GGGCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCC--
T ss_pred             Cccccccc--ccCCCccceeecccCCCCCCch--hhcCCcCCEEEccCCccCCCcc--hhcCCCCCEEECCCCccCCC--
Confidence            98875433  7788999999999998875433  7788999999999999875433  78899999999999999854  


Q ss_pred             cCCcCCCCCcEEEcCCCccCCcCCcccccCCCccEEEcCCccccccCCcCCCCCCCccEEeCCCCccCCcCC-ccccCCC
Q 037302          301 PELMNCSQLQNLVLSHNTLSGIVPPEIGNLTHLRQLDLSHNFINGTIPSQLGYIPNISAVDLSKNNLSGVVP-ASVRIIP  379 (408)
Q Consensus       301 ~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~-~~~~~l~  379 (408)
                      ..+..+++|++|++++|.+.+.  ..+..+++|++|++++|++++..+..+..+++|+.|++++|++++..| ..+.+++
T Consensus       259 ~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~l~~L~  336 (347)
T 4fmz_A          259 NAVKDLTKLKMLNVGSNQISDI--SVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRPLASLSKMD  336 (347)
T ss_dssp             GGGTTCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCGGGHHHHHTCTTCSEEECCSSSCCCCGGGGGCTTCS
T ss_pred             hhHhcCCCcCEEEccCCccCCC--hhhcCCCCCCEEECcCCcCCCcChhHhhccccCCEEEccCCccccccChhhhhccc
Confidence            4678899999999999999865  568899999999999999998888889999999999999999999877 6677888


Q ss_pred             eEEccCCccC
Q 037302          380 KLIVSENNLE  389 (408)
Q Consensus       380 ~l~l~~n~~~  389 (408)
                      +|++++|+++
T Consensus       337 ~L~l~~N~i~  346 (347)
T 4fmz_A          337 SADFANQVIK  346 (347)
T ss_dssp             EESSSCC---
T ss_pred             eeehhhhccc
Confidence            9999999985

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=100.00  E-value=3.4e-33  Score=258.23  Aligned_cols=308  Identities=22%  Similarity=0.221  Sum_probs=145.4

Q ss_pred             CCCcEEEcCCCccccccchhhccCCCCcEEeCCCCcCCCCCcccccCCCCCcEEeCCCceecccCcccccCCCCCceeec
Q 037302           19 PNLESIIIPYTLLSGRIPSEIGALSKLEELALPYNSLTGTIPAEIGSLRNLVELDLSNNILNGSIPLEFGNLKDLDALRL   98 (408)
Q Consensus        19 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l   98 (408)
                      ++++.++++++.+....+..+..+++|++|+++++.+....+..|..+++|++|++++|.+....+..+..+++|++|++
T Consensus        45 ~~l~~l~l~~~~l~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L  124 (390)
T 3o6n_A           45 NNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVL  124 (390)
T ss_dssp             CCCSEEEEESCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred             CCceEEEecCCchhhCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEEEC
Confidence            45555555555444333333445555555555555554444444555555555555555554444444455555555555


Q ss_pred             CCccccccCCCcCCCCCCCCEEEcCCCeecccCcccccCCCCCceEeccCCcccCcCchhhccCCCCCEEEcCCCcCCCC
Q 037302           99 RGNKLDGLIPSSIGNLTNLTHLDLSLNQLSGRLPQEVGNLKNLLSLFLDNNNLTGPIPSTLYHLNQLSNLYLAYNNLVGP  178 (408)
Q Consensus        99 ~~~~i~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~  178 (408)
                      ++|.+..+.+..+..+++|++|++++|.+....+..+..+++|++|++++|.++..   .+..+++|+.+++++|.+.  
T Consensus       125 ~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~---~~~~l~~L~~L~l~~n~l~--  199 (390)
T 3o6n_A          125 ERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHV---DLSLIPSLFHANVSYNLLS--  199 (390)
T ss_dssp             CSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSBC---CGGGCTTCSEEECCSSCCS--
T ss_pred             CCCccCcCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcCCcc---ccccccccceeeccccccc--
Confidence            55555444444444555555555555555444444445555555555555544422   1333455555555544432  


Q ss_pred             CCccccCCCCCCEEEecCcccccccCcccccccccCeEEccCCcCCCCCCcccCCCCCccEEEccCCcccccCCccccCC
Q 037302          179 LPKEVGNMKNLDSLLLNRNSLTGPIPSTIGYLNLGGKLDLSHNRLDSPIPPTIGNLTNLTSLDLSSNQLSGLLPREVGNL  258 (408)
Q Consensus       179 ~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~  258 (408)
                         .+...++|+.|++++|.+.....   ...+.|+.++++++.+...  ..+..+++|++|++++|.+.+..+..+..+
T Consensus       200 ---~~~~~~~L~~L~l~~n~l~~~~~---~~~~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l  271 (390)
T 3o6n_A          200 ---TLAIPIAVEELDASHNSINVVRG---PVNVELTILKLQHNNLTDT--AWLLNYPGLVEVDLSYNELEKIMYHPFVKM  271 (390)
T ss_dssp             ---EEECCSSCSEEECCSSCCCEEEC---CCCSSCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCEEESGGGTTC
T ss_pred             ---ccCCCCcceEEECCCCeeeeccc---cccccccEEECCCCCCccc--HHHcCCCCccEEECCCCcCCCcChhHcccc
Confidence               12333445555555554432211   1224455555555544432  234444555555555555544444444455


Q ss_pred             CCCCEEeCCCCcccccCCccccCCCCCcEEeCCCCccccCCCcCCcCCCCCcEEEcCCCccCCcCCcccccCCCccEEEc
Q 037302          259 KYLDSLSLDGNNLIGSIPPTIGYLTNLTSLNLGYNQLSSSIPPELMNCSQLQNLVLSHNTLSGIVPPEIGNLTHLRQLDL  338 (408)
Q Consensus       259 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l  338 (408)
                      ++|+.|++++|.+... +..+..+++|++|++++|.+. ..+..+..+++|++|++++|.++..   .+..+++|+.|++
T Consensus       272 ~~L~~L~L~~n~l~~~-~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~l~~L~~L~L~~N~i~~~---~~~~~~~L~~L~l  346 (390)
T 3o6n_A          272 QRLERLYISNNRLVAL-NLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIVTL---KLSTHHTLKNLTL  346 (390)
T ss_dssp             SSCCEEECCSSCCCEE-ECSSSCCTTCCEEECCSSCCC-CCGGGHHHHTTCSEEECCSSCCCCC---CCCTTCCCSEEEC
T ss_pred             ccCCEEECCCCcCccc-CcccCCCCCCCEEECCCCcce-ecCccccccCcCCEEECCCCcccee---CchhhccCCEEEc
Confidence            5555555555544422 222334455555555555544 2233344445555555555554432   1334445555555


Q ss_pred             CCcccc
Q 037302          339 SHNFIN  344 (408)
Q Consensus       339 ~~~~~~  344 (408)
                      ++|++.
T Consensus       347 ~~N~~~  352 (390)
T 3o6n_A          347 SHNDWD  352 (390)
T ss_dssp             CSSCEE
T ss_pred             CCCCcc
Confidence            555444

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=100.00  E-value=1.2e-31  Score=263.69  Aligned_cols=379  Identities=19%  Similarity=0.182  Sum_probs=275.2

Q ss_pred             EEEcCCCccccccchhhccCCCCcEEeCCCCcCCCCCcccccCCCCCcEEeCCCceecccCcccccCCCCCceeecCCcc
Q 037302           23 SIIIPYTLLSGRIPSEIGALSKLEELALPYNSLTGTIPAEIGSLRNLVELDLSNNILNGSIPLEFGNLKDLDALRLRGNK  102 (408)
Q Consensus        23 ~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~  102 (408)
                      +.+.++..+. .+|..+.  +++++|+|++|.++...+.+|.++++|++|++++|++....+.+|.++++|++|++++|+
T Consensus        35 ~~~c~~~~l~-~vP~~lp--~~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~  111 (635)
T 4g8a_A           35 TYQCMELNFY-KIPDNLP--FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNP  111 (635)
T ss_dssp             EEECTTSCCS-SCCSSSC--TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCC
T ss_pred             EEECCCCCcC-ccCCCCC--cCCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCc
Confidence            4566655555 4554443  479999999999998878899999999999999999987888889999999999999999


Q ss_pred             ccccCCCcCCCCCCCCEEEcCCCeecccCcccccCCCCCceEeccCCcccCc-CchhhccCCCCCEEEcCCCcCCCCCCc
Q 037302          103 LDGLIPSSIGNLTNLTHLDLSLNQLSGRLPQEVGNLKNLLSLFLDNNNLTGP-IPSTLYHLNQLSNLYLAYNNLVGPLPK  181 (408)
Q Consensus       103 i~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~-~~~~~~~~~~L~~L~l~~~~~~~~~~~  181 (408)
                      ++.+.+..|.++++|++|++++|.+....+..|..+++|++|++++|.+... .+..+..+++|++|++++|.+....+.
T Consensus       112 l~~l~~~~f~~L~~L~~L~Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~  191 (635)
T 4g8a_A          112 IQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCT  191 (635)
T ss_dssp             CCEECGGGGTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGG
T ss_pred             CCCCCHHHhcCCCCCCEEECCCCcCCCCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCccccccccc
Confidence            9988888899999999999999999877777899999999999999998754 456778899999999999987654443


Q ss_pred             cccCCCC----CCEEEecCccccccc------------------------------------------------------
Q 037302          182 EVGNMKN----LDSLLLNRNSLTGPI------------------------------------------------------  203 (408)
Q Consensus       182 ~~~~~~~----L~~L~l~~~~~~~~~------------------------------------------------------  203 (408)
                      .+..+.+    ...++++.+.+....                                                      
T Consensus       192 ~l~~L~~l~~~~~~~~ls~n~l~~i~~~~~~~~~~~~l~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~  271 (635)
T 4g8a_A          192 DLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFD  271 (635)
T ss_dssp             GGHHHHTCTTCCCEEECTTCCCCEECTTTTTTCEEEEEEEESCCSSHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCC
T ss_pred             cccchhhhhhhhhhhhcccCcccccCcccccchhhhhhhhhcccccccccchhhcCCccccccccccccccccccccccc
Confidence            3322211    112222222211000                                                      


Q ss_pred             ---------------------------CcccccccccCeEEccCCcCCCCCCcccCCCCCccEEEccCCcccccCC----
Q 037302          204 ---------------------------PSTIGYLNLGGKLDLSHNRLDSPIPPTIGNLTNLTSLDLSSNQLSGLLP----  252 (408)
Q Consensus       204 ---------------------------~~~~~~~~~L~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~----  252 (408)
                                                 ...+.....++.+.+..+.+...  ..+....+++.|++.++.+.....    
T Consensus       272 ~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~--~~~~~~~~L~~L~l~~~~~~~~~~~~l~  349 (635)
T 4g8a_A          272 KSALEGLCNLTIEEFRLAYLDYYLDGIIDLFNCLTNVSSFSLVSVTIERV--KDFSYNFGWQHLELVNCKFGQFPTLKLK  349 (635)
T ss_dssp             TTTTGGGGGSEEEEEEEECCCSCEEECTTTTGGGTTCSEEEEESCEEEEC--GGGGSCCCCSEEEEESCEESSCCCCBCT
T ss_pred             ccccccccchhhhhhhhhhhcccccchhhhhhhhcccccccccccccccc--cccccchhhhhhhcccccccCcCcccch
Confidence                                       00011122233333333322211  234455677888877765442211    


Q ss_pred             ---------------ccccCCCCCCEEeCCCCccccc--C-----------------------CccccCCCCCcEEeCCC
Q 037302          253 ---------------REVGNLKYLDSLSLDGNNLIGS--I-----------------------PPTIGYLTNLTSLNLGY  292 (408)
Q Consensus       253 ---------------~~~~~~~~L~~L~l~~~~~~~~--~-----------------------~~~~~~~~~L~~L~l~~  292 (408)
                                     .....+++|+.++++++.+...  .                       ...+..+++|+.+++.+
T Consensus       350 ~L~~l~l~~n~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~~~~~~~~~~~~~~~~l~~L~~l~l~~  429 (635)
T 4g8a_A          350 SLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTISLKYLDLSFNGVITMSSNFLGLEQLEHLDFQH  429 (635)
T ss_dssp             TCCEEEEESCCSCCBCCCCBCTTCCEEECCSSCCBEEEECCHHHHSCSCCCEEECCSCSEEEECSCCTTCTTCCEEECTT
T ss_pred             hhhhcccccccCCCCcccccccccccchhhccccccccccccchhhhhhhhhhhccccccccccccccccccccchhhhh
Confidence                           1123467888888887765321  1                       12234456677777766


Q ss_pred             CccccCCC-cCCcCCCCCcEEEcCCCccCCcCCcccccCCCccEEEcCCcccc-ccCCcCCCCCCCccEEeCCCCccCCc
Q 037302          293 NQLSSSIP-PELMNCSQLQNLVLSHNTLSGIVPPEIGNLTHLRQLDLSHNFIN-GTIPSQLGYIPNISAVDLSKNNLSGV  370 (408)
Q Consensus       293 ~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~-~~~~~~~~~~~~L~~L~l~~~~l~~~  370 (408)
                      +......+ ..+..+++++.++++.|.+....+..+..++.++.|++++|... ...|..+..+++|+.|++++|+++++
T Consensus       430 ~~~~~~~~~~~~~~l~~l~~l~ls~n~l~~~~~~~~~~~~~L~~L~Ls~N~~~~~~~~~~~~~l~~L~~L~Ls~N~L~~l  509 (635)
T 4g8a_A          430 SNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQL  509 (635)
T ss_dssp             SEEESTTSSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEE
T ss_pred             ccccccccccccccccccccccccccccccccccccccchhhhhhhhhhcccccccCchhhhhccccCEEECCCCccCCc
Confidence            65543332 44677888999999999888777888889999999999999754 35788899999999999999999999


Q ss_pred             CCcccc---CCCeEEccCCccCCCCCCCcCCCCCCCCCC
Q 037302          371 VPASVR---IIPKLIVSENNLELENSTSSENAPPPQAKP  406 (408)
Q Consensus       371 ~~~~~~---~l~~l~l~~n~~~~~~~~~~~~~~~~~~~~  406 (408)
                      .|..|.   +|++|++++|++++..|..+.+++.|+.+-
T Consensus       510 ~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~  548 (635)
T 4g8a_A          510 SPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLD  548 (635)
T ss_dssp             CTTTTTTCTTCCEEECTTSCCCBCCCGGGTTCTTCCEEE
T ss_pred             ChHHHcCCCCCCEEECCCCcCCCCChhHHhCCCCCCEEE
Confidence            998876   466999999999998899999999887653

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=100.00  E-value=4.1e-32  Score=264.19  Aligned_cols=312  Identities=24%  Similarity=0.202  Sum_probs=237.5

Q ss_pred             cCCCCcEEeCCCCcCCCCCcccccCCCCCcEEeCCCceecccCcccccCCCCCceeecCCccccccCCCcCCCCCCCCEE
Q 037302           41 ALSKLEELALPYNSLTGTIPAEIGSLRNLVELDLSNNILNGSIPLEFGNLKDLDALRLRGNKLDGLIPSSIGNLTNLTHL  120 (408)
Q Consensus        41 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~l~~l~~L~~L  120 (408)
                      .+.+++.+++.++.+....+..+..+++|++|++++|.+.+..+..|..+++|++|++++|.+..+.+..|.++++|++|
T Consensus        49 ~l~~l~~l~l~~~~l~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L  128 (597)
T 3oja_B           49 TLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVL  128 (597)
T ss_dssp             GGCCCSEEEESSCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred             cCCCceEEEeeCCCCCCcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEE
Confidence            45788888888888876666667888888999998888887777788888889999998888887877788888889999


Q ss_pred             EcCCCeecccCcccccCCCCCceEeccCCcccCcCchhhccCCCCCEEEcCCCcCCCCCCccccCCCCCCEEEecCcccc
Q 037302          121 DLSLNQLSGRLPQEVGNLKNLLSLFLDNNNLTGPIPSTLYHLNQLSNLYLAYNNLVGPLPKEVGNMKNLDSLLLNRNSLT  200 (408)
Q Consensus       121 ~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~  200 (408)
                      ++++|.+....+..+..+++|++|++++|.+....+..+..+++|+.|++++|.+...   .+..+++|+.+++++|.+.
T Consensus       129 ~L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~---~~~~l~~L~~L~l~~n~l~  205 (597)
T 3oja_B          129 VLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHV---DLSLIPSLFHANVSYNLLS  205 (597)
T ss_dssp             ECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSBC---CGGGCTTCSEEECCSSCCS
T ss_pred             EeeCCCCCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCCc---ChhhhhhhhhhhcccCccc
Confidence            9888888865555667888888888888888877777788888888888888877643   2566788888888887665


Q ss_pred             cccCcccccccccCeEEccCCcCCCCCCcccCCCCCccEEEccCCcccccCCccccCCCCCCEEeCCCCcccccCCcccc
Q 037302          201 GPIPSTIGYLNLGGKLDLSHNRLDSPIPPTIGNLTNLTSLDLSSNQLSGLLPREVGNLKYLDSLSLDGNNLIGSIPPTIG  280 (408)
Q Consensus       201 ~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~  280 (408)
                      .     +..++.|+.++++++.+....+.   ..++|+.|++++|.+++.  ..+..+++|+.|++++|.+....+..+.
T Consensus       206 ~-----l~~~~~L~~L~ls~n~l~~~~~~---~~~~L~~L~L~~n~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~~~  275 (597)
T 3oja_B          206 T-----LAIPIAVEELDASHNSINVVRGP---VNVELTILKLQHNNLTDT--AWLLNYPGLVEVDLSYNELEKIMYHPFV  275 (597)
T ss_dssp             E-----EECCTTCSEEECCSSCCCEEECS---CCSCCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCEEESGGGT
T ss_pred             c-----ccCCchhheeeccCCcccccccc---cCCCCCEEECCCCCCCCC--hhhccCCCCCEEECCCCccCCCCHHHhc
Confidence            2     34556788888888776543222   135788888888877643  5567778888888888887766677777


Q ss_pred             CCCCCcEEeCCCCccccCCCcCCcCCCCCcEEEcCCCccCCcCCcccccCCCccEEEcCCccccccCCcCCCCCCCccEE
Q 037302          281 YLTNLTSLNLGYNQLSSSIPPELMNCSQLQNLVLSHNTLSGIVPPEIGNLTHLRQLDLSHNFINGTIPSQLGYIPNISAV  360 (408)
Q Consensus       281 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L  360 (408)
                      .+++|++|++++|.++. .+..+..+++|+.|++++|.+. ..+..+..+++|+.|++++|.+++. +  +..+++|+.|
T Consensus       276 ~l~~L~~L~Ls~N~l~~-l~~~~~~l~~L~~L~Ls~N~l~-~i~~~~~~l~~L~~L~L~~N~l~~~-~--~~~~~~L~~L  350 (597)
T 3oja_B          276 KMQRLERLYISNNRLVA-LNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIVTL-K--LSTHHTLKNL  350 (597)
T ss_dssp             TCSSCCEEECTTSCCCE-EECSSSCCTTCCEEECCSSCCC-CCGGGHHHHTTCSEEECCSSCCCCC-C--CCTTCCCSEE
T ss_pred             CccCCCEEECCCCCCCC-CCcccccCCCCcEEECCCCCCC-ccCcccccCCCCCEEECCCCCCCCc-C--hhhcCCCCEE
Confidence            88888888888888774 3444566788888888888877 4455667778888888888887744 2  5567788888


Q ss_pred             eCCCCccCCc
Q 037302          361 DLSKNNLSGV  370 (408)
Q Consensus       361 ~l~~~~l~~~  370 (408)
                      ++++|++.+.
T Consensus       351 ~l~~N~~~~~  360 (597)
T 3oja_B          351 TLSHNDWDCN  360 (597)
T ss_dssp             ECCSSCEEHH
T ss_pred             EeeCCCCCCh
Confidence            8888887643

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=100.00  E-value=2.9e-31  Score=258.27  Aligned_cols=311  Identities=22%  Similarity=0.221  Sum_probs=270.8

Q ss_pred             CCCCCcEEEcCCCccccccchhhccCCCCcEEeCCCCcCCCCCcccccCCCCCcEEeCCCceecccCcccccCCCCCcee
Q 037302           17 CFPNLESIIIPYTLLSGRIPSEIGALSKLEELALPYNSLTGTIPAEIGSLRNLVELDLSNNILNGSIPLEFGNLKDLDAL   96 (408)
Q Consensus        17 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L   96 (408)
                      .+++++.++++++.+....+..+..+++|++|++++|.+.+..+..|..+++|++|++++|.+....+..|.++++|++|
T Consensus        49 ~l~~l~~l~l~~~~l~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L  128 (597)
T 3oja_B           49 TLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVL  128 (597)
T ss_dssp             GGCCCSEEEESSCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred             cCCCceEEEeeCCCCCCcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEE
Confidence            34788999999999886666778999999999999999987777899999999999999999998888889999999999


Q ss_pred             ecCCccccccCCCcCCCCCCCCEEEcCCCeecccCcccccCCCCCceEeccCCcccCcCchhhccCCCCCEEEcCCCcCC
Q 037302           97 RLRGNKLDGLIPSSIGNLTNLTHLDLSLNQLSGRLPQEVGNLKNLLSLFLDNNNLTGPIPSTLYHLNQLSNLYLAYNNLV  176 (408)
Q Consensus        97 ~l~~~~i~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~  176 (408)
                      ++++|.+..+++..|..+++|++|++++|.+....+..+..+++|++|++++|.+...   .+..+++|+.+++++|.+.
T Consensus       129 ~L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~---~~~~l~~L~~L~l~~n~l~  205 (597)
T 3oja_B          129 VLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHV---DLSLIPSLFHANVSYNLLS  205 (597)
T ss_dssp             ECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSBC---CGGGCTTCSEEECCSSCCS
T ss_pred             EeeCCCCCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCCc---ChhhhhhhhhhhcccCccc
Confidence            9999999978777789999999999999999888788899999999999999998754   3566899999999998765


Q ss_pred             CCCCccccCCCCCCEEEecCcccccccCcccccccccCeEEccCCcCCCCCCcccCCCCCccEEEccCCcccccCCcccc
Q 037302          177 GPLPKEVGNMKNLDSLLLNRNSLTGPIPSTIGYLNLGGKLDLSHNRLDSPIPPTIGNLTNLTSLDLSSNQLSGLLPREVG  256 (408)
Q Consensus       177 ~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~  256 (408)
                           .+...++|+.|++++|.+......   ..+.|+.|++++|.+.+  +..+..+++|+.|++++|.+.+..+..+.
T Consensus       206 -----~l~~~~~L~~L~ls~n~l~~~~~~---~~~~L~~L~L~~n~l~~--~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~  275 (597)
T 3oja_B          206 -----TLAIPIAVEELDASHNSINVVRGP---VNVELTILKLQHNNLTD--TAWLLNYPGLVEVDLSYNELEKIMYHPFV  275 (597)
T ss_dssp             -----EEECCTTCSEEECCSSCCCEEECS---CCSCCCEEECCSSCCCC--CGGGGGCTTCSEEECCSSCCCEEESGGGT
T ss_pred             -----cccCCchhheeeccCCcccccccc---cCCCCCEEECCCCCCCC--ChhhccCCCCCEEECCCCccCCCCHHHhc
Confidence                 346677899999999988644322   24689999999999876  36788899999999999999988888899


Q ss_pred             CCCCCCEEeCCCCcccccCCccccCCCCCcEEeCCCCccccCCCcCCcCCCCCcEEEcCCCccCCcCCcccccCCCccEE
Q 037302          257 NLKYLDSLSLDGNNLIGSIPPTIGYLTNLTSLNLGYNQLSSSIPPELMNCSQLQNLVLSHNTLSGIVPPEIGNLTHLRQL  336 (408)
Q Consensus       257 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L  336 (408)
                      .+++|+.|++++|.+... +..+..+++|++|++++|.++ ..+..+..+++|+.|++++|.+...   .+..+++|+.|
T Consensus       276 ~l~~L~~L~Ls~N~l~~l-~~~~~~l~~L~~L~Ls~N~l~-~i~~~~~~l~~L~~L~L~~N~l~~~---~~~~~~~L~~L  350 (597)
T 3oja_B          276 KMQRLERLYISNNRLVAL-NLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIVTL---KLSTHHTLKNL  350 (597)
T ss_dssp             TCSSCCEEECTTSCCCEE-ECSSSCCTTCCEEECCSSCCC-CCGGGHHHHTTCSEEECCSSCCCCC---CCCTTCCCSEE
T ss_pred             CccCCCEEECCCCCCCCC-CcccccCCCCcEEECCCCCCC-ccCcccccCCCCCEEECCCCCCCCc---ChhhcCCCCEE
Confidence            999999999999998753 455677899999999999999 5666678899999999999998755   36778999999


Q ss_pred             EcCCccccc
Q 037302          337 DLSHNFING  345 (408)
Q Consensus       337 ~l~~~~~~~  345 (408)
                      ++++|++..
T Consensus       351 ~l~~N~~~~  359 (597)
T 3oja_B          351 TLSHNDWDC  359 (597)
T ss_dssp             ECCSSCEEH
T ss_pred             EeeCCCCCC
Confidence            999999874

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A

Probab=100.00  E-value=7.8e-31  Score=245.87  Aligned_cols=353  Identities=26%  Similarity=0.297  Sum_probs=174.7

Q ss_pred             CCCcccccccccCCCCCCcEEEcCCCccccccchhhccCCC-------------CcEEeCCCCcCCCCCcccccCCCCCc
Q 037302            4 NGNAAELSQLNFTCFPNLESIIIPYTLLSGRIPSEIGALSK-------------LEELALPYNSLTGTIPAEIGSLRNLV   70 (408)
Q Consensus         4 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~-------------L~~L~l~~~~~~~~~~~~~~~~~~L~   70 (408)
                      +++++.++. ++.++++|++|+++++.+.+..|..+..+.+             +++|++++|.+++. +.   ..++|+
T Consensus        20 ~n~l~~iP~-~i~~L~~L~~L~l~~n~~~~~~p~~~~~l~~L~~l~l~~c~~~~l~~L~l~~~~l~~l-p~---~~~~L~   94 (454)
T 1jl5_A           20 SSNLTEMPV-EAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLDRQAHELELNNLGLSSL-PE---LPPHLE   94 (454)
T ss_dssp             ---------------CCHHHHHHHHHHHHHTSCTTSCCCHHHHHHHHHHHHHHTCSEEECTTSCCSCC-CS---CCTTCS
T ss_pred             cCchhhCCh-hHhcccchhhhhccCCcccccCCcccccchhcchhhhhhhhccCCCEEEecCCccccC-CC---CcCCCC
Confidence            345566664 4788888888888888777777777766654             37777777776632 22   235677


Q ss_pred             EEeCCCceecccCcccccCCCCCceeecCCccccccCCCcCCCCCCCCEEEcCCCeecccCcccccCCCCCceEeccCCc
Q 037302           71 ELDLSNNILNGSIPLEFGNLKDLDALRLRGNKLDGLIPSSIGNLTNLTHLDLSLNQLSGRLPQEVGNLKNLLSLFLDNNN  150 (408)
Q Consensus        71 ~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~  150 (408)
                      +|++++|.+.+ .|..   .++|++|++++|.+..+..    ..++|++|++++|.+.. .+ .+..+++|++|++++|.
T Consensus        95 ~L~l~~n~l~~-lp~~---~~~L~~L~l~~n~l~~l~~----~~~~L~~L~L~~n~l~~-lp-~~~~l~~L~~L~l~~N~  164 (454)
T 1jl5_A           95 SLVASCNSLTE-LPEL---PQSLKSLLVDNNNLKALSD----LPPLLEYLGVSNNQLEK-LP-ELQNSSFLKIIDVDNNS  164 (454)
T ss_dssp             EEECCSSCCSS-CCCC---CTTCCEEECCSSCCSCCCS----CCTTCCEEECCSSCCSS-CC-CCTTCTTCCEEECCSSC
T ss_pred             EEEccCCcCCc-cccc---cCCCcEEECCCCccCcccC----CCCCCCEEECcCCCCCC-Cc-ccCCCCCCCEEECCCCc
Confidence            77777777663 3432   3567777776666553321    11567777777776664 33 46666777777777666


Q ss_pred             ccCcCchhhccCCCCCEEEcCCCcCCCCCCccccCCCCCCEEEecCcccccccCcccccccccCeEEccCCcCCCCCCcc
Q 037302          151 LTGPIPSTLYHLNQLSNLYLAYNNLVGPLPKEVGNMKNLDSLLLNRNSLTGPIPSTIGYLNLGGKLDLSHNRLDSPIPPT  230 (408)
Q Consensus       151 ~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~  230 (408)
                      ++. .+..   .++|++|++++|.+.. .+ .+..+++|+.|++++|.+.+. +.   ..+.|+.+++++|.+.. .+ .
T Consensus       165 l~~-lp~~---~~~L~~L~L~~n~l~~-l~-~~~~l~~L~~L~l~~N~l~~l-~~---~~~~L~~L~l~~n~l~~-lp-~  232 (454)
T 1jl5_A          165 LKK-LPDL---PPSLEFIAAGNNQLEE-LP-ELQNLPFLTAIYADNNSLKKL-PD---LPLSLESIVAGNNILEE-LP-E  232 (454)
T ss_dssp             CSC-CCCC---CTTCCEEECCSSCCSS-CC-CCTTCTTCCEEECCSSCCSSC-CC---CCTTCCEEECCSSCCSS-CC-C
T ss_pred             Ccc-cCCC---cccccEEECcCCcCCc-Cc-cccCCCCCCEEECCCCcCCcC-CC---CcCcccEEECcCCcCCc-cc-c
Confidence            653 2221   2466677776666654 23 456666677777766665531 11   12466666666666552 33 3


Q ss_pred             cCCCCCccEEEccCCcccccCCccccCCCCCCEEeCCCCcccccCCccccCCCCCcEEeCCCCccccCCCc---------
Q 037302          231 IGNLTNLTSLDLSSNQLSGLLPREVGNLKYLDSLSLDGNNLIGSIPPTIGYLTNLTSLNLGYNQLSSSIPP---------  301 (408)
Q Consensus       231 l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~---------  301 (408)
                      +..+++|++|++++|.+.+. +.   ..++|+.|++++|.+... +.   .+++|++|++++|.+++....         
T Consensus       233 ~~~l~~L~~L~l~~N~l~~l-~~---~~~~L~~L~l~~N~l~~l-~~---~~~~L~~L~ls~N~l~~l~~~~~~L~~L~l  304 (454)
T 1jl5_A          233 LQNLPFLTTIYADNNLLKTL-PD---LPPSLEALNVRDNYLTDL-PE---LPQSLTFLDVSENIFSGLSELPPNLYYLNA  304 (454)
T ss_dssp             CTTCTTCCEEECCSSCCSSC-CS---CCTTCCEEECCSSCCSCC-CC---CCTTCCEEECCSSCCSEESCCCTTCCEEEC
T ss_pred             cCCCCCCCEEECCCCcCCcc-cc---cccccCEEECCCCccccc-Cc---ccCcCCEEECcCCccCcccCcCCcCCEEEC
Confidence            55666666666666665532 11   125566666666655432 11   124555555555555431100         


Q ss_pred             ------CCcCC-CCCcEEEcCCCccCCcCCcccccCCCccEEEcCCccccccCCcCCCCCCCccEEeCCCCccCC--cCC
Q 037302          302 ------ELMNC-SQLQNLVLSHNTLSGIVPPEIGNLTHLRQLDLSHNFINGTIPSQLGYIPNISAVDLSKNNLSG--VVP  372 (408)
Q Consensus       302 ------~~~~~-~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~--~~~  372 (408)
                            .+... ++|++|++++|++.+ .+..   +++|++|++++|+++ .+|.   .+++|+.|++++|++.+  ..|
T Consensus       305 ~~N~l~~i~~~~~~L~~L~Ls~N~l~~-lp~~---~~~L~~L~L~~N~l~-~lp~---~l~~L~~L~L~~N~l~~l~~ip  376 (454)
T 1jl5_A          305 SSNEIRSLCDLPPSLEELNVSNNKLIE-LPAL---PPRLERLIASFNHLA-EVPE---LPQNLKQLHVEYNPLREFPDIP  376 (454)
T ss_dssp             CSSCCSEECCCCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCS-CCCC---CCTTCCEEECCSSCCSSCCCCC
T ss_pred             cCCcCCcccCCcCcCCEEECCCCcccc-cccc---CCcCCEEECCCCccc-cccc---hhhhccEEECCCCCCCcCCCCh
Confidence                  01111 355555555555543 2211   355666666666555 3333   34556666666666655  334


Q ss_pred             ccc----------------cCCCeEEccCCccCC--CCCCCcCCC
Q 037302          373 ASV----------------RIIPKLIVSENNLEL--ENSTSSENA  399 (408)
Q Consensus       373 ~~~----------------~~l~~l~l~~n~~~~--~~~~~~~~~  399 (408)
                      ..+                .++++|++++|++++  .+|.++.++
T Consensus       377 ~~l~~L~~n~~~~~i~~~~~~L~~L~ls~N~l~~~~~iP~sl~~L  421 (454)
T 1jl5_A          377 ESVEDLRMNSHLAEVPELPQNLKQLHVETNPLREFPDIPESVEDL  421 (454)
T ss_dssp             TTCCEEECCC-----------------------------------
T ss_pred             HHHHhhhhcccccccccccCcCCEEECCCCcCCccccchhhHhhe
Confidence            433                234456666666665  555555444

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}

Probab=99.98  E-value=1.7e-30  Score=243.78  Aligned_cols=324  Identities=23%  Similarity=0.221  Sum_probs=254.4

Q ss_pred             ccccchhhccCCCCcEEeCCCCcCCCCCcccccCCCCCcEEeCCCceecccCcccccCCCCCceeecCCccccccCCCcC
Q 037302           32 SGRIPSEIGALSKLEELALPYNSLTGTIPAEIGSLRNLVELDLSNNILNGSIPLEFGNLKDLDALRLRGNKLDGLIPSSI  111 (408)
Q Consensus        32 ~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~l  111 (408)
                      .+..+..+..+++|++|+++++.+++. + .+..+++|++|++++|.+.+. +  +..+++|++|++++|.++..   .+
T Consensus        31 ~~~~~~~~~~l~~L~~L~Ls~n~l~~~-~-~l~~l~~L~~L~Ls~n~l~~~-~--~~~l~~L~~L~Ls~N~l~~~---~~  102 (457)
T 3bz5_A           31 QATDTISEEQLATLTSLDCHNSSITDM-T-GIEKLTGLTKLICTSNNITTL-D--LSQNTNLTYLACDSNKLTNL---DV  102 (457)
T ss_dssp             CTTSEEEHHHHTTCCEEECCSSCCCCC-T-TGGGCTTCSEEECCSSCCSCC-C--CTTCTTCSEEECCSSCCSCC---CC
T ss_pred             CcccccChhHcCCCCEEEccCCCcccC-h-hhcccCCCCEEEccCCcCCeE-c--cccCCCCCEEECcCCCCcee---ec
Confidence            334445678899999999999999854 4 688999999999999998854 3  78999999999999998865   28


Q ss_pred             CCCCCCCEEEcCCCeecccCcccccCCCCCceEeccCCcccCcCchhhccCCCCCEEEcCCCcCCCCCCccccCCCCCCE
Q 037302          112 GNLTNLTHLDLSLNQLSGRLPQEVGNLKNLLSLFLDNNNLTGPIPSTLYHLNQLSNLYLAYNNLVGPLPKEVGNMKNLDS  191 (408)
Q Consensus       112 ~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~  191 (408)
                      ..+++|++|++++|.+... +  +..+++|++|++++|.++..   .+..+++|+.|++++|......  .+..+++|+.
T Consensus       103 ~~l~~L~~L~L~~N~l~~l-~--~~~l~~L~~L~l~~N~l~~l---~l~~l~~L~~L~l~~n~~~~~~--~~~~l~~L~~  174 (457)
T 3bz5_A          103 TPLTKLTYLNCDTNKLTKL-D--VSQNPLLTYLNCARNTLTEI---DVSHNTQLTELDCHLNKKITKL--DVTPQTQLTT  174 (457)
T ss_dssp             TTCTTCCEEECCSSCCSCC-C--CTTCTTCCEEECTTSCCSCC---CCTTCTTCCEEECTTCSCCCCC--CCTTCTTCCE
T ss_pred             CCCCcCCEEECCCCcCCee-c--CCCCCcCCEEECCCCcccee---ccccCCcCCEEECCCCCccccc--ccccCCcCCE
Confidence            8999999999999998853 2  78899999999999998864   3778999999999999654433  4788999999


Q ss_pred             EEecCcccccccCcccccccccCeEEccCCcCCCCCCcccCCCCCccEEEccCCcccccCCccccCCCCCCEEeCCCCcc
Q 037302          192 LLLNRNSLTGPIPSTIGYLNLGGKLDLSHNRLDSPIPPTIGNLTNLTSLDLSSNQLSGLLPREVGNLKYLDSLSLDGNNL  271 (408)
Q Consensus       192 L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~  271 (408)
                      |++++|.+.+. +  +..++.|+.+++++|.+...   .+..+++|+.|++++|.+.+. +  +..+++|+.|++++|.+
T Consensus       175 L~ls~n~l~~l-~--l~~l~~L~~L~l~~N~l~~~---~l~~l~~L~~L~Ls~N~l~~i-p--~~~l~~L~~L~l~~N~l  245 (457)
T 3bz5_A          175 LDCSFNKITEL-D--VSQNKLLNRLNCDTNNITKL---DLNQNIQLTFLDCSSNKLTEI-D--VTPLTQLTYFDCSVNPL  245 (457)
T ss_dssp             EECCSSCCCCC-C--CTTCTTCCEEECCSSCCSCC---CCTTCTTCSEEECCSSCCSCC-C--CTTCTTCSEEECCSSCC
T ss_pred             EECCCCcccee-c--cccCCCCCEEECcCCcCCee---ccccCCCCCEEECcCCccccc-C--ccccCCCCEEEeeCCcC
Confidence            99999998753 2  77889999999999988765   377889999999999999863 3  77889999999999998


Q ss_pred             cccCCccccCCCCCcEEeCCCCccccCCC--------cCCcCCCCCcEEEcCCCccCCcC--------CcccccCCCccE
Q 037302          272 IGSIPPTIGYLTNLTSLNLGYNQLSSSIP--------PELMNCSQLQNLVLSHNTLSGIV--------PPEIGNLTHLRQ  335 (408)
Q Consensus       272 ~~~~~~~~~~~~~L~~L~l~~~~~~~~~~--------~~~~~~~~L~~L~l~~~~~~~~~--------~~~~~~~~~L~~  335 (408)
                      ....   ...+++|+.|+++++.+.....        ..+..+++|+.|++++|...+..        .-.+..+++|++
T Consensus       246 ~~~~---~~~l~~L~~L~l~~n~L~~L~l~~n~~~~~~~~~~l~~L~~L~Ls~n~~l~~l~~~~~~L~~L~l~~~~~L~~  322 (457)
T 3bz5_A          246 TELD---VSTLSKLTTLHCIQTDLLEIDLTHNTQLIYFQAEGCRKIKELDVTHNTQLYLLDCQAAGITELDLSQNPKLVY  322 (457)
T ss_dssp             SCCC---CTTCTTCCEEECTTCCCSCCCCTTCTTCCEEECTTCTTCCCCCCTTCTTCCEEECTTCCCSCCCCTTCTTCCE
T ss_pred             CCcC---HHHCCCCCEEeccCCCCCEEECCCCccCCcccccccccCCEEECCCCcccceeccCCCcceEechhhcccCCE
Confidence            7654   3455666666555544332111        12456788999999888643221        123566788888


Q ss_pred             EEcCCccccccCCcCCCCCCCccEEeCCCCccCCcCCccccCCCeEEccCCccCCC
Q 037302          336 LDLSHNFINGTIPSQLGYIPNISAVDLSKNNLSGVVPASVRIIPKLIVSENNLELE  391 (408)
Q Consensus       336 L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~l~l~~n~~~~~  391 (408)
                      |++++|++++. +  +..+++|+.|++++|+++++     ..+..|+++.|.++|.
T Consensus       323 L~L~~N~l~~l-~--l~~l~~L~~L~l~~N~l~~l-----~~L~~L~l~~n~l~g~  370 (457)
T 3bz5_A          323 LYLNNTELTEL-D--VSHNTKLKSLSCVNAHIQDF-----SSVGKIPALNNNFEAE  370 (457)
T ss_dssp             EECTTCCCSCC-C--CTTCTTCSEEECCSSCCCBC-----TTGGGSSGGGTSEEEE
T ss_pred             EECCCCccccc-c--cccCCcCcEEECCCCCCCCc-----cccccccccCCcEEec
Confidence            88888888864 3  77888888888888888863     4566777888888765

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=99.97  E-value=1.4e-29  Score=228.60  Aligned_cols=291  Identities=24%  Similarity=0.301  Sum_probs=181.3

Q ss_pred             CCcEEeCCCCcCCCCCcccccCCCCCcEEeCCCceecccCcccccCCCCCceeecCCccccccCCCcCCCCCCCCEEEcC
Q 037302           44 KLEELALPYNSLTGTIPAEIGSLRNLVELDLSNNILNGSIPLEFGNLKDLDALRLRGNKLDGLIPSSIGNLTNLTHLDLS  123 (408)
Q Consensus        44 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~l~~l~~L~~L~l~  123 (408)
                      +++.++++++.++ ..+..+  .+.+++|+++++.+....+..|.++++|++|++++|.+..+.+..+..+++|++|+++
T Consensus        32 ~l~~l~~~~~~l~-~lp~~~--~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls  108 (330)
T 1xku_A           32 HLRVVQCSDLGLE-KVPKDL--PPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLS  108 (330)
T ss_dssp             ETTEEECTTSCCC-SCCCSC--CTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECC
T ss_pred             CCeEEEecCCCcc-ccCccC--CCCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECC
Confidence            5666776666555 233322  2466666776666665555556666667777776666665656666666666666666


Q ss_pred             CCeecccCcccccCCCCCceEeccCCcccCcCchhhccCCCCCEEEcCCCcCCCCCCccccCCCCCCEEEecCccccccc
Q 037302          124 LNQLSGRLPQEVGNLKNLLSLFLDNNNLTGPIPSTLYHLNQLSNLYLAYNNLVGPLPKEVGNMKNLDSLLLNRNSLTGPI  203 (408)
Q Consensus       124 ~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~  203 (408)
                      +|.+.. .+..+.  ++|++|++++|.+.......+..+++|+.|++++|.+..                      .+..
T Consensus       109 ~n~l~~-l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~----------------------~~~~  163 (330)
T 1xku_A          109 KNQLKE-LPEKMP--KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKS----------------------SGIE  163 (330)
T ss_dssp             SSCCSB-CCSSCC--TTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCG----------------------GGBC
T ss_pred             CCcCCc-cChhhc--ccccEEECCCCcccccCHhHhcCCccccEEECCCCcCCc----------------------cCcC
Confidence            666552 222222  456666666666554444455555666666665555432                      0022


Q ss_pred             CcccccccccCeEEccCCcCCCCCCcccCCCCCccEEEccCCcccccCCccccCCCCCCEEeCCCCcccccCCccccCCC
Q 037302          204 PSTIGYLNLGGKLDLSHNRLDSPIPPTIGNLTNLTSLDLSSNQLSGLLPREVGNLKYLDSLSLDGNNLIGSIPPTIGYLT  283 (408)
Q Consensus       204 ~~~~~~~~~L~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~  283 (408)
                      +..+..+++|+.++++++.+... +..+  .++|++|++++|.+.+..+..+..+++|+.|++++|.+....+..+..++
T Consensus       164 ~~~~~~l~~L~~L~l~~n~l~~l-~~~~--~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~  240 (330)
T 1xku_A          164 NGAFQGMKKLSYIRIADTNITTI-PQGL--PPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTP  240 (330)
T ss_dssp             TTGGGGCTTCCEEECCSSCCCSC-CSSC--CTTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGST
T ss_pred             hhhccCCCCcCEEECCCCccccC-Cccc--cccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCceeChhhccCCC
Confidence            23334444444455544444332 1111  15677777777777666666677777788888877777665555677778


Q ss_pred             CCcEEeCCCCccccCCCcCCcCCCCCcEEEcCCCccCCcCCccccc------CCCccEEEcCCccccc--cCCcCCCCCC
Q 037302          284 NLTSLNLGYNQLSSSIPPELMNCSQLQNLVLSHNTLSGIVPPEIGN------LTHLRQLDLSHNFING--TIPSQLGYIP  355 (408)
Q Consensus       284 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~------~~~L~~L~l~~~~~~~--~~~~~~~~~~  355 (408)
                      +|++|++++|.++ ..+..+..+++|++|++++|+++++....|..      .+.++.+++++|++..  ..|..+..++
T Consensus       241 ~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~i~~~~~~~f~~~~~~~~~~~l~~l~l~~N~~~~~~i~~~~f~~~~  319 (330)
T 1xku_A          241 HLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVY  319 (330)
T ss_dssp             TCCEEECCSSCCS-SCCTTTTTCSSCCEEECCSSCCCCCCTTSSSCSSCCTTSCCCSEEECCSSSSCGGGSCGGGGTTCC
T ss_pred             CCCEEECCCCcCc-cCChhhccCCCcCEEECCCCcCCccChhhcCCcccccccccccceEeecCcccccccCcccccccc
Confidence            8888888888877 55666777888888888888877666555543      3678899999998764  4567788888


Q ss_pred             CccEEeCCCCc
Q 037302          356 NISAVDLSKNN  366 (408)
Q Consensus       356 ~L~~L~l~~~~  366 (408)
                      +++.+++++|+
T Consensus       320 ~l~~l~L~~N~  330 (330)
T 1xku_A          320 VRAAVQLGNYK  330 (330)
T ss_dssp             CGGGEEC----
T ss_pred             ceeEEEecccC
Confidence            99999998875

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=99.97  E-value=2.3e-29  Score=227.19  Aligned_cols=265  Identities=25%  Similarity=0.334  Sum_probs=185.3

Q ss_pred             CCCEEEcCCCeecccCcccccCCCCCceEeccCCcccCcCchhhccCCCCCEEEcCCCcCCCCCCccccCCCCCCEEEec
Q 037302          116 NLTHLDLSLNQLSGRLPQEVGNLKNLLSLFLDNNNLTGPIPSTLYHLNQLSNLYLAYNNLVGPLPKEVGNMKNLDSLLLN  195 (408)
Q Consensus       116 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~  195 (408)
                      ++++|++++|.+....+..+..+++|++|++++|.+....+..+..+++|++|++++|.+... +..+  .++|++|+++
T Consensus        53 ~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~l-~~~~--~~~L~~L~l~  129 (330)
T 1xku_A           53 DTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLKEL-PEKM--PKTLQELRVH  129 (330)
T ss_dssp             TCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCSBC-CSSC--CTTCCEEECC
T ss_pred             CCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECCCCcCCcc-Chhh--cccccEEECC
Confidence            344444444444433333344444444444444444433344444445555555555444321 1111  2567777777


Q ss_pred             CcccccccCcccccccccCeEEccCCcCCC--CCCcccCCCCCccEEEccCCcccccCCccccCCCCCCEEeCCCCcccc
Q 037302          196 RNSLTGPIPSTIGYLNLGGKLDLSHNRLDS--PIPPTIGNLTNLTSLDLSSNQLSGLLPREVGNLKYLDSLSLDGNNLIG  273 (408)
Q Consensus       196 ~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~--~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~  273 (408)
                      +|.+.+.....+..++.|+.++++++.+..  ..+..+..+++|++|++++|.+... +..+  .++|++|++++|.+..
T Consensus       130 ~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~l-~~~~--~~~L~~L~l~~n~l~~  206 (330)
T 1xku_A          130 ENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTI-PQGL--PPSLTELHLDGNKITK  206 (330)
T ss_dssp             SSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCCSC-CSSC--CTTCSEEECTTSCCCE
T ss_pred             CCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCccccC-Cccc--cccCCEEECCCCcCCc
Confidence            776665555566777888888888877653  4556788899999999999988743 3332  2899999999999987


Q ss_pred             cCCccccCCCCCcEEeCCCCccccCCCcCCcCCCCCcEEEcCCCccCCcCCcccccCCCccEEEcCCccccccCCcCCCC
Q 037302          274 SIPPTIGYLTNLTSLNLGYNQLSSSIPPELMNCSQLQNLVLSHNTLSGIVPPEIGNLTHLRQLDLSHNFINGTIPSQLGY  353 (408)
Q Consensus       274 ~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~  353 (408)
                      ..+..+..+++|++|++++|.++...+..+..+++|++|++++|++. ..+..+..+++|++|++++|++++..+..|..
T Consensus       207 ~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~i~~~~~~~f~~  285 (330)
T 1xku_A          207 VDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNISAIGSNDFCP  285 (330)
T ss_dssp             ECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCS-SCCTTTTTCSSCCEEECCSSCCCCCCTTSSSC
T ss_pred             cCHHHhcCCCCCCEEECCCCcCceeChhhccCCCCCCEEECCCCcCc-cCChhhccCCCcCEEECCCCcCCccChhhcCC
Confidence            77788999999999999999999877778899999999999999998 56677889999999999999999777766643


Q ss_pred             ------CCCccEEeCCCCccCC--cCCcccc---CCCeEEccCCc
Q 037302          354 ------IPNISAVDLSKNNLSG--VVPASVR---IIPKLIVSENN  387 (408)
Q Consensus       354 ------~~~L~~L~l~~~~l~~--~~~~~~~---~l~~l~l~~n~  387 (408)
                            .++++.+++++|++..  +.|..|.   .++.+++++|+
T Consensus       286 ~~~~~~~~~l~~l~l~~N~~~~~~i~~~~f~~~~~l~~l~L~~N~  330 (330)
T 1xku_A          286 PGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQLGNYK  330 (330)
T ss_dssp             SSCCTTSCCCSEEECCSSSSCGGGSCGGGGTTCCCGGGEEC----
T ss_pred             cccccccccccceEeecCcccccccCccccccccceeEEEecccC
Confidence                  3789999999999975  4455555   45599999885

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I

Probab=99.97  E-value=3.5e-34  Score=270.98  Aligned_cols=376  Identities=21%  Similarity=0.175  Sum_probs=269.6

Q ss_pred             CCCcEEEcCCCccccccch-hhccCCCCcEEeCCCCcCCCC----CcccccCCCCCcEEeCCCceecccCcccc-cCCC-
Q 037302           19 PNLESIIIPYTLLSGRIPS-EIGALSKLEELALPYNSLTGT----IPAEIGSLRNLVELDLSNNILNGSIPLEF-GNLK-   91 (408)
Q Consensus        19 ~~L~~L~l~~~~~~~~~~~-~~~~~~~L~~L~l~~~~~~~~----~~~~~~~~~~L~~L~l~~~~~~~~~~~~~-~~l~-   91 (408)
                      ++|++|+++++.+...... .+..+++|++|++++|.++..    .+..+..+++|++|++++|.+.+..+..+ ..++ 
T Consensus         3 ~~l~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~   82 (461)
T 1z7x_W            3 LDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQT   82 (461)
T ss_dssp             EEEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCS
T ss_pred             ccceehhhhhcccCchhHHHHHhhcCCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHHHHHHHHhh
Confidence            5788999988887754433 378889999999999987632    34556778999999999988765433333 3344 


Q ss_pred             ---CCceeecCCccccc----cCCCcCCCCCCCCEEEcCCCeecccCccccc-----CCCCCceEeccCCcccCcC----
Q 037302           92 ---DLDALRLRGNKLDG----LIPSSIGNLTNLTHLDLSLNQLSGRLPQEVG-----NLKNLLSLFLDNNNLTGPI----  155 (408)
Q Consensus        92 ---~L~~L~l~~~~i~~----~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~-----~l~~L~~L~l~~~~~~~~~----  155 (408)
                         +|++|++++|.+..    ..+..+..+++|++|++++|.+....+..+.     ..++|++|++++|.++...    
T Consensus        83 ~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l  162 (461)
T 1z7x_W           83 PSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPL  162 (461)
T ss_dssp             TTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHH
T ss_pred             CCCceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHHH
Confidence               69999999998774    3366788889999999999887644333332     3567999999998877533    


Q ss_pred             chhhccCCCCCEEEcCCCcCCCCCCcccc-----CCCCCCEEEecCcccccc----cCcccccccccCeEEccCCcCCCC
Q 037302          156 PSTLYHLNQLSNLYLAYNNLVGPLPKEVG-----NMKNLDSLLLNRNSLTGP----IPSTIGYLNLGGKLDLSHNRLDSP  226 (408)
Q Consensus       156 ~~~~~~~~~L~~L~l~~~~~~~~~~~~~~-----~~~~L~~L~l~~~~~~~~----~~~~~~~~~~L~~l~l~~~~~~~~  226 (408)
                      ...+..+++|++|++++|.+.......+.     ..++|++|++++|.+.+.    .+..+..++.|+++++++|.+...
T Consensus       163 ~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~  242 (461)
T 1z7x_W          163 ASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDV  242 (461)
T ss_dssp             HHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHHH
T ss_pred             HHHHhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCcCChH
Confidence            44556678999999998886533222222     356899999999887653    345566788999999998876542


Q ss_pred             C-----CcccCCCCCccEEEccCCccccc----CCccccCCCCCCEEeCCCCcccccCCccc-----cCCCCCcEEeCCC
Q 037302          227 I-----PPTIGNLTNLTSLDLSSNQLSGL----LPREVGNLKYLDSLSLDGNNLIGSIPPTI-----GYLTNLTSLNLGY  292 (408)
Q Consensus       227 ~-----~~~l~~~~~L~~L~l~~~~~~~~----~~~~~~~~~~L~~L~l~~~~~~~~~~~~~-----~~~~~L~~L~l~~  292 (408)
                      .     +..+..+++|++|++++|.+++.    .+..+..+++|++|++++|.+.+.....+     ...++|++|++++
T Consensus       243 ~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~  322 (461)
T 1z7x_W          243 GMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKS  322 (461)
T ss_dssp             HHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTT
T ss_pred             HHHHHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCCCchHHHHHHHHHhccCCccceeeEcCC
Confidence            1     12223578899999999988753    34456668899999999988754322222     2336899999999


Q ss_pred             CccccCC----CcCCcCCCCCcEEEcCCCccCCcCCccccc-----CCCccEEEcCCccccc----cCCcCCCCCCCccE
Q 037302          293 NQLSSSI----PPELMNCSQLQNLVLSHNTLSGIVPPEIGN-----LTHLRQLDLSHNFING----TIPSQLGYIPNISA  359 (408)
Q Consensus       293 ~~~~~~~----~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~-----~~~L~~L~l~~~~~~~----~~~~~~~~~~~L~~  359 (408)
                      |.++...    +..+..+++|++|++++|.+.+.....+..     .++|++|++++|.+++    .++..+..+++|+.
T Consensus       323 n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~  402 (461)
T 1z7x_W          323 CSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRE  402 (461)
T ss_dssp             SCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCCCCCE
T ss_pred             CCCchHHHHHHHHHHhhCCCccEEEccCCccccccHHHHHHHHcCCCCceEEEECCCCCCChhhHHHHHHHHHhCCCccE
Confidence            9887542    344556789999999999876544433332     6799999999999886    56777778899999


Q ss_pred             EeCCCCccCCc--------CCccccCCCeEEccCCccCCCCCC
Q 037302          360 VDLSKNNLSGV--------VPASVRIIPKLIVSENNLELENST  394 (408)
Q Consensus       360 L~l~~~~l~~~--------~~~~~~~l~~l~l~~n~~~~~~~~  394 (408)
                      |++++|++.+.        .|...+.++.|.+.++......++
T Consensus       403 L~l~~N~i~~~~~~~l~~~l~~~~~~L~~L~~~~~~~~~~~~~  445 (461)
T 1z7x_W          403 LDLSNNCLGDAGILQLVESVRQPGCLLEQLVLYDIYWSEEMED  445 (461)
T ss_dssp             EECCSSSCCHHHHHHHHHHHTSTTCCCCEEECTTCCCCHHHHH
T ss_pred             EECCCCCCCHHHHHHHHHHhccCCcchhheeecccccCHHHHH
Confidence            99999998765        344455788888888887654443

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=99.97  E-value=3.4e-29  Score=226.18  Aligned_cols=288  Identities=22%  Similarity=0.278  Sum_probs=203.0

Q ss_pred             CCcEEeCCCCcCCCCCcccccCCCCCcEEeCCCceecccCcccccCCCCCceeecCCccccccCCCcCCCCCCCCEEEcC
Q 037302           44 KLEELALPYNSLTGTIPAEIGSLRNLVELDLSNNILNGSIPLEFGNLKDLDALRLRGNKLDGLIPSSIGNLTNLTHLDLS  123 (408)
Q Consensus        44 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~l~~l~~L~~L~l~  123 (408)
                      +++.++++++.++ ..|..+  .++|++|++++|.+....+..|.++++|++|++++|.++.+.+..+.++++|++|+++
T Consensus        34 ~l~~l~~~~~~l~-~ip~~~--~~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~  110 (332)
T 2ft3_A           34 HLRVVQCSDLGLK-AVPKEI--SPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYIS  110 (332)
T ss_dssp             ETTEEECCSSCCS-SCCSCC--CTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECC
T ss_pred             cCCEEECCCCCcc-ccCCCC--CCCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECC
Confidence            5666666666655 333333  2466677777766665555566667777777777776666666666667777777777


Q ss_pred             CCeecccCcccccCCCCCceEeccCCcccCcCchhhccCCCCCEEEcCCCcCCC--CCCccccCCCCCCEEEecCccccc
Q 037302          124 LNQLSGRLPQEVGNLKNLLSLFLDNNNLTGPIPSTLYHLNQLSNLYLAYNNLVG--PLPKEVGNMKNLDSLLLNRNSLTG  201 (408)
Q Consensus       124 ~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~--~~~~~~~~~~~L~~L~l~~~~~~~  201 (408)
                      +|.+.. .+..+.  ++|++|++++|.+.......+..+++|+.|++++|.+..  ..+..+..+ +|+.|++++|.+.+
T Consensus       111 ~n~l~~-l~~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~l~~n~l~~  186 (332)
T 2ft3_A          111 KNHLVE-IPPNLP--SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRISEAKLTG  186 (332)
T ss_dssp             SSCCCS-CCSSCC--TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCSCCBCCSSBCSS
T ss_pred             CCcCCc-cCcccc--ccCCEEECCCCccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCC-ccCEEECcCCCCCc
Confidence            766652 232222  567777777777665555556667777777777776642  334445555 77777777777664


Q ss_pred             ccCcccccccccCeEEccCCcCCCCCCcccCCCCCccEEEccCCcccccCCccccCCCCCCEEeCCCCcccccCCccccC
Q 037302          202 PIPSTIGYLNLGGKLDLSHNRLDSPIPPTIGNLTNLTSLDLSSNQLSGLLPREVGNLKYLDSLSLDGNNLIGSIPPTIGY  281 (408)
Q Consensus       202 ~~~~~~~~~~~L~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~  281 (408)
                      . +..+  .+.|+.+++++|.+....+..+..+++|++|++++|.+.+..+..+..+++|+.|++++|.+. ..+..+..
T Consensus       187 l-~~~~--~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~~  262 (332)
T 2ft3_A          187 I-PKDL--PETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLS-RVPAGLPD  262 (332)
T ss_dssp             C-CSSS--CSSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSSCCC-BCCTTGGG
T ss_pred             c-Cccc--cCCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCcCChhHhhCCCCCCEEECCCCcCe-ecChhhhc
Confidence            3 2222  267888888888888777778888899999999999888777777888899999999999887 55566888


Q ss_pred             CCCCcEEeCCCCccccCCCcCCcC------CCCCcEEEcCCCccC--CcCCcccccCCCccEEEcCCcc
Q 037302          282 LTNLTSLNLGYNQLSSSIPPELMN------CSQLQNLVLSHNTLS--GIVPPEIGNLTHLRQLDLSHNF  342 (408)
Q Consensus       282 ~~~L~~L~l~~~~~~~~~~~~~~~------~~~L~~L~l~~~~~~--~~~~~~~~~~~~L~~L~l~~~~  342 (408)
                      +++|++|++++|.++......+..      .+.|+.|++++|++.  +..+.+|..+++|+.+++++|.
T Consensus       263 l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~l~~L~l~~N~~~~~~~~~~~~~~l~~L~~l~l~~n~  331 (332)
T 2ft3_A          263 LKLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQPATFRCVTDRLAIQFGNYK  331 (332)
T ss_dssp             CTTCCEEECCSSCCCBCCTTSSSCSSCCSSSCCBSEEECCSSSSCGGGSCGGGGTTBCCSTTEEC----
T ss_pred             CccCCEEECCCCCCCccChhHccccccccccccccceEeecCcccccccCcccccccchhhhhhccccc
Confidence            999999999999998766665554      467999999999876  5677788899999999999884

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=99.97  E-value=3.8e-29  Score=225.83  Aligned_cols=287  Identities=21%  Similarity=0.284  Sum_probs=163.5

Q ss_pred             CCcEEeCCCceecccCcccccCCCCCceeecCCccccccCCCcCCCCCCCCEEEcCCCeecccCcccccCCCCCceEecc
Q 037302           68 NLVELDLSNNILNGSIPLEFGNLKDLDALRLRGNKLDGLIPSSIGNLTNLTHLDLSLNQLSGRLPQEVGNLKNLLSLFLD  147 (408)
Q Consensus        68 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~  147 (408)
                      +++.++++++.+. ..|..+  .++|++|+++++.+..+.+..+.++++|++|++++|.+....+..+..+++|++|+++
T Consensus        34 ~l~~l~~~~~~l~-~ip~~~--~~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~  110 (332)
T 2ft3_A           34 HLRVVQCSDLGLK-AVPKEI--SPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYIS  110 (332)
T ss_dssp             ETTEEECCSSCCS-SCCSCC--CTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECC
T ss_pred             cCCEEECCCCCcc-ccCCCC--CCCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECC
Confidence            6788888888776 445444  2678888888888877777778888888888888888876667778888888888888


Q ss_pred             CCcccCcCchhhccCCCCCEEEcCCCcCCCCCCccccCCCCCCEEEecCccccc--ccCcccccccccCeEEccCCcCCC
Q 037302          148 NNNLTGPIPSTLYHLNQLSNLYLAYNNLVGPLPKEVGNMKNLDSLLLNRNSLTG--PIPSTIGYLNLGGKLDLSHNRLDS  225 (408)
Q Consensus       148 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~--~~~~~~~~~~~L~~l~l~~~~~~~  225 (408)
                      +|.+.. .+..+.  ++|++|++++|.+....+..+..+++|+.|++++|.+..  ..+..+..+ .|+.++++++.+..
T Consensus       111 ~n~l~~-l~~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~l~~n~l~~  186 (332)
T 2ft3_A          111 KNHLVE-IPPNLP--SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRISEAKLTG  186 (332)
T ss_dssp             SSCCCS-CCSSCC--TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCSCCBCCSSBCSS
T ss_pred             CCcCCc-cCcccc--ccCCEEECCCCccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCC-ccCEEECcCCCCCc
Confidence            887763 333222  678888888777766555567777777777777776642  233334433 55555555555543


Q ss_pred             CCCcccCCCCCccEEEccCCcccccCCccccCCCCCCEEeCCCCcccccCCccccCCCCCcEEeCCCCccccCCCcCCcC
Q 037302          226 PIPPTIGNLTNLTSLDLSSNQLSGLLPREVGNLKYLDSLSLDGNNLIGSIPPTIGYLTNLTSLNLGYNQLSSSIPPELMN  305 (408)
Q Consensus       226 ~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~  305 (408)
                      . +..+.  ++|++|++++|.+....+..+..+++|+.|++++|.+....+..+..+++|++|++++|.++ ..+..+..
T Consensus       187 l-~~~~~--~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~~  262 (332)
T 2ft3_A          187 I-PKDLP--ETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLS-RVPAGLPD  262 (332)
T ss_dssp             C-CSSSC--SSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSSCCC-BCCTTGGG
T ss_pred             c-Ccccc--CCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCcCChhHhhCCCCCCEEECCCCcCe-ecChhhhc
Confidence            2 21111  34555555555544443344444455555555555444333334444445555555554444 33333444


Q ss_pred             CCCCcEEEcCCCccCCcCCccccc------CCCccEEEcCCcccc--ccCCcCCCCCCCccEEeCCCC
Q 037302          306 CSQLQNLVLSHNTLSGIVPPEIGN------LTHLRQLDLSHNFIN--GTIPSQLGYIPNISAVDLSKN  365 (408)
Q Consensus       306 ~~~L~~L~l~~~~~~~~~~~~~~~------~~~L~~L~l~~~~~~--~~~~~~~~~~~~L~~L~l~~~  365 (408)
                      +++|++|++++|++++.....|..      .+.|+.+++++|++.  +..+.++..+++|+.+++++|
T Consensus       263 l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~l~~L~l~~N~~~~~~~~~~~~~~l~~L~~l~l~~n  330 (332)
T 2ft3_A          263 LKLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQPATFRCVTDRLAIQFGNY  330 (332)
T ss_dssp             CTTCCEEECCSSCCCBCCTTSSSCSSCCSSSCCBSEEECCSSSSCGGGSCGGGGTTBCCSTTEEC---
T ss_pred             CccCCEEECCCCCCCccChhHccccccccccccccceEeecCcccccccCcccccccchhhhhhcccc
Confidence            444444544444444333333322      133444444444443  233334444444444444443

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A

Probab=99.97  E-value=7.6e-28  Score=225.60  Aligned_cols=334  Identities=27%  Similarity=0.351  Sum_probs=210.4

Q ss_pred             CCCcEEEcCCCccccccchhhccCCCCcEEeCCCCcCCCCCcccccCCCCCcEEeCCCceecccCcccccCCCCCceeec
Q 037302           19 PNLESIIIPYTLLSGRIPSEIGALSKLEELALPYNSLTGTIPAEIGSLRNLVELDLSNNILNGSIPLEFGNLKDLDALRL   98 (408)
Q Consensus        19 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l   98 (408)
                      ++|++|+++++.+.+ +|.   .+++|++|++++|.++.. +.   ..++|++|++++|.+.+ .| .+.++++|++|++
T Consensus        91 ~~L~~L~l~~n~l~~-lp~---~~~~L~~L~l~~n~l~~l-~~---~~~~L~~L~L~~n~l~~-lp-~~~~l~~L~~L~l  160 (454)
T 1jl5_A           91 PHLESLVASCNSLTE-LPE---LPQSLKSLLVDNNNLKAL-SD---LPPLLEYLGVSNNQLEK-LP-ELQNSSFLKIIDV  160 (454)
T ss_dssp             TTCSEEECCSSCCSS-CCC---CCTTCCEEECCSSCCSCC-CS---CCTTCCEEECCSSCCSS-CC-CCTTCTTCCEEEC
T ss_pred             CCCCEEEccCCcCCc-ccc---ccCCCcEEECCCCccCcc-cC---CCCCCCEEECcCCCCCC-Cc-ccCCCCCCCEEEC
Confidence            577888888777775 443   236788888888877632 11   12688888888888874 55 4788888888888


Q ss_pred             CCccccccCCCcCCCCCCCCEEEcCCCeecccCcccccCCCCCceEeccCCcccCcCchhhccCCCCCEEEcCCCcCCCC
Q 037302           99 RGNKLDGLIPSSIGNLTNLTHLDLSLNQLSGRLPQEVGNLKNLLSLFLDNNNLTGPIPSTLYHLNQLSNLYLAYNNLVGP  178 (408)
Q Consensus        99 ~~~~i~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~  178 (408)
                      ++|.++.+ +..   .++|++|++++|.+.. .+ .+..+++|++|++++|.++. .+.   ..++|++|++++|.+. .
T Consensus       161 ~~N~l~~l-p~~---~~~L~~L~L~~n~l~~-l~-~~~~l~~L~~L~l~~N~l~~-l~~---~~~~L~~L~l~~n~l~-~  229 (454)
T 1jl5_A          161 DNNSLKKL-PDL---PPSLEFIAAGNNQLEE-LP-ELQNLPFLTAIYADNNSLKK-LPD---LPLSLESIVAGNNILE-E  229 (454)
T ss_dssp             CSSCCSCC-CCC---CTTCCEEECCSSCCSS-CC-CCTTCTTCCEEECCSSCCSS-CCC---CCTTCCEEECCSSCCS-S
T ss_pred             CCCcCccc-CCC---cccccEEECcCCcCCc-Cc-cccCCCCCCEEECCCCcCCc-CCC---CcCcccEEECcCCcCC-c
Confidence            88887653 222   3588888888888874 33 57788888888888888764 222   1357888888888776 3


Q ss_pred             CCccccCCCCCCEEEecCcccccccCcccccccccCeEEccCCcCCCCCCcccCCCCCccEEEccCCcccccCCccccCC
Q 037302          179 LPKEVGNMKNLDSLLLNRNSLTGPIPSTIGYLNLGGKLDLSHNRLDSPIPPTIGNLTNLTSLDLSSNQLSGLLPREVGNL  258 (408)
Q Consensus       179 ~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~  258 (408)
                      .+ .+..+++|+.|++++|.+.+. +.   .++.|+.+++++|.+... +..   +++|+.|++++|.+.+...    ..
T Consensus       230 lp-~~~~l~~L~~L~l~~N~l~~l-~~---~~~~L~~L~l~~N~l~~l-~~~---~~~L~~L~ls~N~l~~l~~----~~  296 (454)
T 1jl5_A          230 LP-ELQNLPFLTTIYADNNLLKTL-PD---LPPSLEALNVRDNYLTDL-PEL---PQSLTFLDVSENIFSGLSE----LP  296 (454)
T ss_dssp             CC-CCTTCTTCCEEECCSSCCSSC-CS---CCTTCCEEECCSSCCSCC-CCC---CTTCCEEECCSSCCSEESC----CC
T ss_pred             cc-ccCCCCCCCEEECCCCcCCcc-cc---cccccCEEECCCCccccc-Ccc---cCcCCEEECcCCccCcccC----cC
Confidence            44 377888899999888887642 22   347888888888887652 322   3788999999888764211    12


Q ss_pred             CCCCEEeCCCCcccccCCccccCCCCCcEEeCCCCccccCCCcCCcCCCCCcEEEcCCCccCCcCCcccccCCCccEEEc
Q 037302          259 KYLDSLSLDGNNLIGSIPPTIGYLTNLTSLNLGYNQLSSSIPPELMNCSQLQNLVLSHNTLSGIVPPEIGNLTHLRQLDL  338 (408)
Q Consensus       259 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l  338 (408)
                      ++|+.|++++|.+....    ...++|++|++++|.+++ .+..   +++|++|++++|.++. .+.   .+++|++|++
T Consensus       297 ~~L~~L~l~~N~l~~i~----~~~~~L~~L~Ls~N~l~~-lp~~---~~~L~~L~L~~N~l~~-lp~---~l~~L~~L~L  364 (454)
T 1jl5_A          297 PNLYYLNASSNEIRSLC----DLPPSLEELNVSNNKLIE-LPAL---PPRLERLIASFNHLAE-VPE---LPQNLKQLHV  364 (454)
T ss_dssp             TTCCEEECCSSCCSEEC----CCCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCSC-CCC---CCTTCCEEEC
T ss_pred             CcCCEEECcCCcCCccc----CCcCcCCEEECCCCcccc-cccc---CCcCCEEECCCCcccc-ccc---hhhhccEEEC
Confidence            68999999998876421    123589999999999985 3332   5899999999999984 343   4689999999


Q ss_pred             CCccccc--cCCcCCCCC-------------CCccEEeCCCCccCC--cCCccccCCCeEEccCCccCCCCCCCcCCCCC
Q 037302          339 SHNFING--TIPSQLGYI-------------PNISAVDLSKNNLSG--VVPASVRIIPKLIVSENNLELENSTSSENAPP  401 (408)
Q Consensus       339 ~~~~~~~--~~~~~~~~~-------------~~L~~L~l~~~~l~~--~~~~~~~~l~~l~l~~n~~~~~~~~~~~~~~~  401 (408)
                      ++|++++  .+|..+..+             ++|+.|++++|++++  .+|.   .++.+.+.+|.+.+.+|-..+....
T Consensus       365 ~~N~l~~l~~ip~~l~~L~~n~~~~~i~~~~~~L~~L~ls~N~l~~~~~iP~---sl~~L~~~~~~~~~~~~~~~~~~~~  441 (454)
T 1jl5_A          365 EYNPLREFPDIPESVEDLRMNSHLAEVPELPQNLKQLHVETNPLREFPDIPE---SVEDLRMNSERVVDPYEFAHETTDK  441 (454)
T ss_dssp             CSSCCSSCCCCCTTCCEEECCC----------------------------------------------------------
T ss_pred             CCCCCCcCCCChHHHHhhhhcccccccccccCcCCEEECCCCcCCccccchh---hHhheeCcCcccCCccccCHHHhhh
Confidence            9999998  677777766             889999999999997  4454   4567788999998888776655443

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I

Probab=99.96  E-value=1.4e-32  Score=260.08  Aligned_cols=366  Identities=20%  Similarity=0.152  Sum_probs=274.2

Q ss_pred             Ccccccccc-cCCCCCCcEEEcCCCccccc----cchhhccCCCCcEEeCCCCcCCCCCcccc-cCCC----CCcEEeCC
Q 037302            6 NAAELSQLN-FTCFPNLESIIIPYTLLSGR----IPSEIGALSKLEELALPYNSLTGTIPAEI-GSLR----NLVELDLS   75 (408)
Q Consensus         6 ~~~~~~~~~-~~~~~~L~~L~l~~~~~~~~----~~~~~~~~~~L~~L~l~~~~~~~~~~~~~-~~~~----~L~~L~l~   75 (408)
                      +++...... |..+++|++|++++|.+.+.    ++..+..+++|++|++++|.+.+.....+ ..++    +|++|+++
T Consensus        14 ~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~L~   93 (461)
T 1z7x_W           14 ELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQ   93 (461)
T ss_dssp             CCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCSTTCCCCEEECT
T ss_pred             ccCchhHHHHHhhcCCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHHHHHHHHhhCCCceeEEEcc
Confidence            344444333 78899999999999998743    45667889999999999998865333333 3344    79999999


Q ss_pred             Cceecc----cCcccccCCCCCceeecCCccccccCCCc-----CCCCCCCCEEEcCCCeecccC----cccccCCCCCc
Q 037302           76 NNILNG----SIPLEFGNLKDLDALRLRGNKLDGLIPSS-----IGNLTNLTHLDLSLNQLSGRL----PQEVGNLKNLL  142 (408)
Q Consensus        76 ~~~~~~----~~~~~~~~l~~L~~L~l~~~~i~~~~~~~-----l~~l~~L~~L~l~~~~~~~~~----~~~~~~l~~L~  142 (408)
                      +|.+.+    ..+..+..+++|++|++++|.+....+..     ....++|++|++++|.+....    +..+..+++|+
T Consensus        94 ~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~  173 (461)
T 1z7x_W           94 NCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFK  173 (461)
T ss_dssp             TSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCTTCC
T ss_pred             CCCCCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHHHHHHHhhCCCCC
Confidence            999874    45778899999999999999876433322     233578999999999887543    44556789999


Q ss_pred             eEeccCCcccCcCchhhc-----cCCCCCEEEcCCCcCCCC----CCccccCCCCCCEEEecCccccccc-----Ccccc
Q 037302          143 SLFLDNNNLTGPIPSTLY-----HLNQLSNLYLAYNNLVGP----LPKEVGNMKNLDSLLLNRNSLTGPI-----PSTIG  208 (408)
Q Consensus       143 ~L~l~~~~~~~~~~~~~~-----~~~~L~~L~l~~~~~~~~----~~~~~~~~~~L~~L~l~~~~~~~~~-----~~~~~  208 (408)
                      +|++++|.+.......+.     ..++|++|++++|.+...    ++..+..+++|++|++++|.+.+..     ...+.
T Consensus       174 ~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~  253 (461)
T 1z7x_W          174 ELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGMAELCPGLLH  253 (461)
T ss_dssp             EEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHTS
T ss_pred             EEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCcCChHHHHHHHHHHhc
Confidence            999999987754444333     256999999999988753    3456677899999999999876432     22223


Q ss_pred             cccccCeEEccCCcCCCC----CCcccCCCCCccEEEccCCcccccCCcccc-----CCCCCCEEeCCCCccccc----C
Q 037302          209 YLNLGGKLDLSHNRLDSP----IPPTIGNLTNLTSLDLSSNQLSGLLPREVG-----NLKYLDSLSLDGNNLIGS----I  275 (408)
Q Consensus       209 ~~~~L~~l~l~~~~~~~~----~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~-----~~~~L~~L~l~~~~~~~~----~  275 (408)
                      .++.|++|++++|.++..    .+..+..+++|++|++++|.+.+.....+.     ..++|++|++++|.+...    .
T Consensus       254 ~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l  333 (461)
T 1z7x_W          254 PSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHF  333 (461)
T ss_dssp             TTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHH
T ss_pred             CCCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCCCchHHHHHHHHHhccCCccceeeEcCCCCCchHHHHHH
Confidence            578999999999988753    344566689999999999988754443333     236999999999998754    3


Q ss_pred             CccccCCCCCcEEeCCCCccccCCCcCCc-----CCCCCcEEEcCCCccCC----cCCcccccCCCccEEEcCCcccccc
Q 037302          276 PPTIGYLTNLTSLNLGYNQLSSSIPPELM-----NCSQLQNLVLSHNTLSG----IVPPEIGNLTHLRQLDLSHNFINGT  346 (408)
Q Consensus       276 ~~~~~~~~~L~~L~l~~~~~~~~~~~~~~-----~~~~L~~L~l~~~~~~~----~~~~~~~~~~~L~~L~l~~~~~~~~  346 (408)
                      +..+..+++|++|++++|.+++..+..+.     ..++|++|++++|.+++    ..+..+..+++|++|++++|++++.
T Consensus       334 ~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~N~i~~~  413 (461)
T 1z7x_W          334 SSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDA  413 (461)
T ss_dssp             HHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCCCCCEEECCSSSCCHH
T ss_pred             HHHHhhCCCccEEEccCCccccccHHHHHHHHcCCCCceEEEECCCCCCChhhHHHHHHHHHhCCCccEEECCCCCCCHH
Confidence            44566789999999999998765443332     26899999999999875    4566777899999999999999865


Q ss_pred             CCcC----CC-CCCCccEEeCCCCccCCcC
Q 037302          347 IPSQ----LG-YIPNISAVDLSKNNLSGVV  371 (408)
Q Consensus       347 ~~~~----~~-~~~~L~~L~l~~~~l~~~~  371 (408)
                      ....    +. ...+|+.|.+.++.+....
T Consensus       414 ~~~~l~~~l~~~~~~L~~L~~~~~~~~~~~  443 (461)
T 1z7x_W          414 GILQLVESVRQPGCLLEQLVLYDIYWSEEM  443 (461)
T ss_dssp             HHHHHHHHHTSTTCCCCEEECTTCCCCHHH
T ss_pred             HHHHHHHHhccCCcchhheeecccccCHHH
Confidence            3222    21 2457999999888776543

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=99.96  E-value=1.1e-28  Score=220.58  Aligned_cols=248  Identities=31%  Similarity=0.496  Sum_probs=144.6

Q ss_pred             CceEeccCCcccC--cCchhhccCCCCCEEEcCC-CcCCCCCCccccCCCCCCEEEecCcccccccCcccccccccCeEE
Q 037302          141 LLSLFLDNNNLTG--PIPSTLYHLNQLSNLYLAY-NNLVGPLPKEVGNMKNLDSLLLNRNSLTGPIPSTIGYLNLGGKLD  217 (408)
Q Consensus       141 L~~L~l~~~~~~~--~~~~~~~~~~~L~~L~l~~-~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~  217 (408)
                      ++.|+++++.+.+  ..+..+..+++|++|++++ +.+....+..+..+++|++|++++|.+.+..+..+..+++|++|+
T Consensus        52 l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~  131 (313)
T 1ogq_A           52 VNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLD  131 (313)
T ss_dssp             EEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEE
T ss_pred             EEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCEEe
Confidence            4444444444433  3334444444444444442 333333444444455555555555544444444445555555555


Q ss_pred             ccCCcCCCCCCcccCCCCCccEEEccCCcccccCCccccCCC-CCCEEeCCCCcccccCCccccCCCCCcEEeCCCCccc
Q 037302          218 LSHNRLDSPIPPTIGNLTNLTSLDLSSNQLSGLLPREVGNLK-YLDSLSLDGNNLIGSIPPTIGYLTNLTSLNLGYNQLS  296 (408)
Q Consensus       218 l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~-~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~  296 (408)
                      +++|.+....+..+..+++|++|++++|.+.+..+..+..++ +|+.|++++|.+....+..+..++ |++|++++|.++
T Consensus       132 Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~-L~~L~Ls~N~l~  210 (313)
T 1ogq_A          132 FSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSRNMLE  210 (313)
T ss_dssp             CCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCC-CSEEECCSSEEE
T ss_pred             CCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCCc-ccEEECcCCccc
Confidence            555555444455555556666666666665545555555555 666666666666555555555554 777777777766


Q ss_pred             cCCCcCCcCCCCCcEEEcCCCccCCcCCcccccCCCccEEEcCCccccccCCcCCCCCCCccEEeCCCCccCCcCCcc--
Q 037302          297 SSIPPELMNCSQLQNLVLSHNTLSGIVPPEIGNLTHLRQLDLSHNFINGTIPSQLGYIPNISAVDLSKNNLSGVVPAS--  374 (408)
Q Consensus       297 ~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~--  374 (408)
                      +..+..+..+++|+.|++++|.+.+..+. +..+++|++|++++|++++.+|..+..+++|+.|++++|++.+.+|..  
T Consensus       211 ~~~~~~~~~l~~L~~L~L~~N~l~~~~~~-~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~~~  289 (313)
T 1ogq_A          211 GDASVLFGSDKNTQKIHLAKNSLAFDLGK-VGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQGGN  289 (313)
T ss_dssp             ECCGGGCCTTSCCSEEECCSSEECCBGGG-CCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCCSTT
T ss_pred             CcCCHHHhcCCCCCEEECCCCceeeecCc-ccccCCCCEEECcCCcccCcCChHHhcCcCCCEEECcCCcccccCCCCcc
Confidence            66666666677777777777776643333 566677777777777777667777777777777777777777666643  


Q ss_pred             ccCCCeEEccCCc-cCC
Q 037302          375 VRIIPKLIVSENN-LEL  390 (408)
Q Consensus       375 ~~~l~~l~l~~n~-~~~  390 (408)
                      +.+++.+++++|+ +.|
T Consensus       290 l~~L~~l~l~~N~~lc~  306 (313)
T 1ogq_A          290 LQRFDVSAYANNKCLCG  306 (313)
T ss_dssp             GGGSCGGGTCSSSEEES
T ss_pred             ccccChHHhcCCCCccC
Confidence            3455677777777 444

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=99.96  E-value=2.1e-28  Score=218.72  Aligned_cols=252  Identities=30%  Similarity=0.486  Sum_probs=226.5

Q ss_pred             CCCCEEEcCCCeecc--cCcccccCCCCCceEeccC-CcccCcCchhhccCCCCCEEEcCCCcCCCCCCccccCCCCCCE
Q 037302          115 TNLTHLDLSLNQLSG--RLPQEVGNLKNLLSLFLDN-NNLTGPIPSTLYHLNQLSNLYLAYNNLVGPLPKEVGNMKNLDS  191 (408)
Q Consensus       115 ~~L~~L~l~~~~~~~--~~~~~~~~l~~L~~L~l~~-~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~  191 (408)
                      .++++|+++++.+.+  ..+..+..+++|++|++++ +.+....+..+..+++|++|++++|.+....+..+..+++|++
T Consensus        50 ~~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~  129 (313)
T 1ogq_A           50 YRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVT  129 (313)
T ss_dssp             CCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCE
T ss_pred             ceEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCE
Confidence            579999999999987  6788899999999999995 8888788888999999999999999988777888999999999


Q ss_pred             EEecCcccccccCcccccccccCeEEccCCcCCCCCCcccCCCC-CccEEEccCCcccccCCccccCCCCCCEEeCCCCc
Q 037302          192 LLLNRNSLTGPIPSTIGYLNLGGKLDLSHNRLDSPIPPTIGNLT-NLTSLDLSSNQLSGLLPREVGNLKYLDSLSLDGNN  270 (408)
Q Consensus       192 L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~l~~~~-~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~  270 (408)
                      |++++|.+.+..+..+..+++|++|++++|.+.+..+..+..++ +|++|++++|.+.+..+..+..++ |+.|++++|.
T Consensus       130 L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~-L~~L~Ls~N~  208 (313)
T 1ogq_A          130 LDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSRNM  208 (313)
T ss_dssp             EECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCC-CSEEECCSSE
T ss_pred             EeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCCc-ccEEECcCCc
Confidence            99999999878888899999999999999998877788888887 999999999999877888888776 9999999999


Q ss_pred             ccccCCccccCCCCCcEEeCCCCccccCCCcCCcCCCCCcEEEcCCCccCCcCCcccccCCCccEEEcCCccccccCCcC
Q 037302          271 LIGSIPPTIGYLTNLTSLNLGYNQLSSSIPPELMNCSQLQNLVLSHNTLSGIVPPEIGNLTHLRQLDLSHNFINGTIPSQ  350 (408)
Q Consensus       271 ~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~  350 (408)
                      +....+..+..+++|++|++++|.++...+. +..+++|++|++++|.+.+..+..+..+++|++|++++|++++.+|..
T Consensus       209 l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~-~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~  287 (313)
T 1ogq_A          209 LEGDASVLFGSDKNTQKIHLAKNSLAFDLGK-VGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQG  287 (313)
T ss_dssp             EEECCGGGCCTTSCCSEEECCSSEECCBGGG-CCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCCS
T ss_pred             ccCcCCHHHhcCCCCCEEECCCCceeeecCc-ccccCCCCEEECcCCcccCcCChHHhcCcCCCEEECcCCcccccCCCC
Confidence            9877888889999999999999999855444 778899999999999998888999999999999999999999888876


Q ss_pred             CCCCCCccEEeCCCCc-cCC
Q 037302          351 LGYIPNISAVDLSKNN-LSG  369 (408)
Q Consensus       351 ~~~~~~L~~L~l~~~~-l~~  369 (408)
                       ..+++|+.+++++|+ +.+
T Consensus       288 -~~l~~L~~l~l~~N~~lc~  306 (313)
T 1ogq_A          288 -GNLQRFDVSAYANNKCLCG  306 (313)
T ss_dssp             -TTGGGSCGGGTCSSSEEES
T ss_pred             -ccccccChHHhcCCCCccC
Confidence             788999999999998 554

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=99.95  E-value=2.7e-27  Score=211.26  Aligned_cols=283  Identities=23%  Similarity=0.282  Sum_probs=199.6

Q ss_pred             ceeecCCccccccCCCcCCCCCCCCEEEcCCCeecccCcccccCCCCCceEeccCCcccCcC--chhhccCCCCCEEEcC
Q 037302           94 DALRLRGNKLDGLIPSSIGNLTNLTHLDLSLNQLSGRLPQEVGNLKNLLSLFLDNNNLTGPI--PSTLYHLNQLSNLYLA  171 (408)
Q Consensus        94 ~~L~l~~~~i~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~--~~~~~~~~~L~~L~l~  171 (408)
                      +.++.+++.++.++. .+  .++|++|+++++.+.......+..+++|++|++++|.+....  +..+..+++|++|+++
T Consensus        10 ~~l~c~~~~l~~ip~-~~--~~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls   86 (306)
T 2z66_A           10 TEIRCNSKGLTSVPT-GI--PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLS   86 (306)
T ss_dssp             TEEECCSSCCSSCCS-CC--CTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECC
T ss_pred             CEEEcCCCCcccCCC-CC--CCCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECC
Confidence            456666666654432 22  256777777777776444445667777777777777655221  3344456666666666


Q ss_pred             CCcCCCCCCccccCCCCCCEEEecCcccccccCcccccccccCeEEccCCcCCCCCC-cccCCCCCccEEEccCCccccc
Q 037302          172 YNNLVGPLPKEVGNMKNLDSLLLNRNSLTGPIPSTIGYLNLGGKLDLSHNRLDSPIP-PTIGNLTNLTSLDLSSNQLSGL  250 (408)
Q Consensus       172 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~-~~l~~~~~L~~L~l~~~~~~~~  250 (408)
                      +|.+.. .+..+..+++|++|++++|                        .+..... ..+..+++|++|++++|.+...
T Consensus        87 ~n~i~~-l~~~~~~l~~L~~L~l~~n------------------------~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~  141 (306)
T 2z66_A           87 FNGVIT-MSSNFLGLEQLEHLDFQHS------------------------NLKQMSEFSVFLSLRNLIYLDISHTHTRVA  141 (306)
T ss_dssp             SCSEEE-EEEEEETCTTCCEEECTTS------------------------EEESSTTTTTTTTCTTCCEEECTTSCCEEC
T ss_pred             CCcccc-ChhhcCCCCCCCEEECCCC------------------------cccccccchhhhhccCCCEEECCCCcCCcc
Confidence            665442 2223444555555555544                        4433322 3456677788888888877766


Q ss_pred             CCccccCCCCCCEEeCCCCcccc-cCCccccCCCCCcEEeCCCCccccCCCcCCcCCCCCcEEEcCCCccCCcCCccccc
Q 037302          251 LPREVGNLKYLDSLSLDGNNLIG-SIPPTIGYLTNLTSLNLGYNQLSSSIPPELMNCSQLQNLVLSHNTLSGIVPPEIGN  329 (408)
Q Consensus       251 ~~~~~~~~~~L~~L~l~~~~~~~-~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~  329 (408)
                      .+..+..+++|++|++++|.+.. ..+..+..+++|++|++++|.+++..+..+..+++|++|++++|.+++.....+..
T Consensus       142 ~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~  221 (306)
T 2z66_A          142 FNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKC  221 (306)
T ss_dssp             STTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCSBCCSGGGTT
T ss_pred             chhhcccCcCCCEEECCCCccccccchhHHhhCcCCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCccCccChhhccC
Confidence            66677778888888888888765 35667788899999999999998777788888999999999999998777778888


Q ss_pred             CCCccEEEcCCccccccCCcCCCCCC-CccEEeCCCCccCCcCC-----ccccCCCeEEccCCccCCCCCCCcCCCCCCC
Q 037302          330 LTHLRQLDLSHNFINGTIPSQLGYIP-NISAVDLSKNNLSGVVP-----ASVRIIPKLIVSENNLELENSTSSENAPPPQ  403 (408)
Q Consensus       330 ~~~L~~L~l~~~~~~~~~~~~~~~~~-~L~~L~l~~~~l~~~~~-----~~~~~l~~l~l~~n~~~~~~~~~~~~~~~~~  403 (408)
                      +++|+.|++++|++++..+..+..++ +|+.|++++|++.+..+     +.+...+.+....+.+.++.|..+.+.+-++
T Consensus       222 l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~L~L~~N~~~~~c~~~~~~~~l~~~~~~~~~~~~~~C~~p~~~~g~~~~~  301 (306)
T 2z66_A          222 LNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTCEHQSFLQWIKDQRQLLVEVERMECATPSDKQGMPVLS  301 (306)
T ss_dssp             CTTCCEEECTTSCCCBCSSSSCCCCCTTCCEEECTTCCEECSGGGHHHHHHHHHTGGGBSCGGGCBEEESGGGTTCBGGG
T ss_pred             cccCCEeECCCCCCcccCHHHHHhhhccCCEEEccCCCeecccChHHHHHHHHhhhhhhccccccccCCchhhCCceeee
Confidence            99999999999999988888888884 89999999999986532     2334455667778888899999888766544


Q ss_pred             C
Q 037302          404 A  404 (408)
Q Consensus       404 ~  404 (408)
                      .
T Consensus       302 ~  302 (306)
T 2z66_A          302 L  302 (306)
T ss_dssp             C
T ss_pred             e
Confidence            3

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=99.94  E-value=1.7e-30  Score=253.41  Aligned_cols=387  Identities=14%  Similarity=0.114  Sum_probs=206.5

Q ss_pred             ccccccccCCCCCCcEEEcCCCccc---cccc------------hhhccCCCCcEEeCCCCcCCCCCcccccC-CCC-Cc
Q 037302            8 AELSQLNFTCFPNLESIIIPYTLLS---GRIP------------SEIGALSKLEELALPYNSLTGTIPAEIGS-LRN-LV   70 (408)
Q Consensus         8 ~~~~~~~~~~~~~L~~L~l~~~~~~---~~~~------------~~~~~~~~L~~L~l~~~~~~~~~~~~~~~-~~~-L~   70 (408)
                      .......+.++|+|+.|+++++...   +..|            .....+++|++|+++++.+++.....+.. +++ |+
T Consensus        62 ~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~L~  141 (592)
T 3ogk_B           62 TATPDRLSRRFPNLRSLKLKGKPRAAMFNLIPENWGGYVTPWVTEISNNLRQLKSVHFRRMIVSDLDLDRLAKARADDLE  141 (592)
T ss_dssp             GSCHHHHHHHCTTCSEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCBCCHHHHHHHHHHHGGGCC
T ss_pred             ccChHHHHHhCCCCeEEEecCCcchhhcccccccccccchHHHHHHHhhCCCCCeEEeeccEecHHHHHHHHHhccccCc
Confidence            3344556677777888888665321   1111            11236777888888777665443344433 333 77


Q ss_pred             EEeCCCce-ecc-cCcccccCCCCCceeecCCccccccCC----CcCCCCCCCCEEEcCCCeecc----cCcccccCCCC
Q 037302           71 ELDLSNNI-LNG-SIPLEFGNLKDLDALRLRGNKLDGLIP----SSIGNLTNLTHLDLSLNQLSG----RLPQEVGNLKN  140 (408)
Q Consensus        71 ~L~l~~~~-~~~-~~~~~~~~l~~L~~L~l~~~~i~~~~~----~~l~~l~~L~~L~l~~~~~~~----~~~~~~~~l~~  140 (408)
                      +|++++|. +.. ..+.....+++|++|++++|.+.....    .....+++|++|+++++.+..    ..+..+..+++
T Consensus       142 ~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~  221 (592)
T 3ogk_B          142 TLKLDKCSGFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRS  221 (592)
T ss_dssp             EEEEESCEEEEHHHHHHHHHHCTTCSEEECTTCEEECCCSHHHHHHHHHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTT
T ss_pred             EEECcCCCCcCHHHHHHHHhhCCCCCEEECccccccCcchhHHHHHHhcCCCccEEEeeccCCCccCHHHHHHHHhhCCC
Confidence            77777765 221 122223466777777777776543321    123456777777777776642    22223345677


Q ss_pred             CceEeccCCcccCcCchhhccCCCCCEEEcCCCcCC---CCCCccccCCCCCCEEEecCcccccccCcccccccccCeEE
Q 037302          141 LLSLFLDNNNLTGPIPSTLYHLNQLSNLYLAYNNLV---GPLPKEVGNMKNLDSLLLNRNSLTGPIPSTIGYLNLGGKLD  217 (408)
Q Consensus       141 L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~---~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~  217 (408)
                      |++|+++++.+.. .+..+..+++|+++.++.....   ......+..+++|+.+.+.++.. ...+..+..+++|++|+
T Consensus       222 L~~L~L~~~~~~~-l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~-~~l~~~~~~~~~L~~L~  299 (592)
T 3ogk_B          222 LVSVKVGDFEILE-LVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGP-NEMPILFPFAAQIRKLD  299 (592)
T ss_dssp             CCEEECSSCBGGG-GHHHHHHCTTCCEEEECBCCCCTTCTTSSSCCCCCTTCCEEEETTCCT-TTGGGGGGGGGGCCEEE
T ss_pred             CcEEeccCccHHH-HHHHHhhhhHHHhhcccccccccchHHHHHHhhccccccccCccccch-hHHHHHHhhcCCCcEEe
Confidence            7777777776653 4455666777777776542211   11222344455555555544321 12333444455555555


Q ss_pred             ccCCcCCCCCC-cccCCCC------------------------CccEEEccC----------C-cccccCC-ccccCCCC
Q 037302          218 LSHNRLDSPIP-PTIGNLT------------------------NLTSLDLSS----------N-QLSGLLP-REVGNLKY  260 (408)
Q Consensus       218 l~~~~~~~~~~-~~l~~~~------------------------~L~~L~l~~----------~-~~~~~~~-~~~~~~~~  260 (408)
                      +++|.+..... ..+..++                        +|++|++++          | .+++... .....+++
T Consensus       300 Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~  379 (592)
T 3ogk_B          300 LLYALLETEDHCTLIQKCPNLEVLETRNVIGDRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQE  379 (592)
T ss_dssp             ETTCCCCHHHHHHHHTTCTTCCEEEEEGGGHHHHHHHHHHHCTTCCEEEEECCCCSSTTSSTTCCCCHHHHHHHHHHCTT
T ss_pred             cCCCcCCHHHHHHHHHhCcCCCEEeccCccCHHHHHHHHHhCCCCCEEEeecCccccccccccCccCHHHHHHHHhhCcc
Confidence            55554321111 1123344                        444444442          2 2221111 11223455


Q ss_pred             CCEEeCCCCcccccCCcccc-CCCCCcEEeCC----CCccccC-----CCcCCcCCCCCcEEEcCCCc--cCCcCCccc-
Q 037302          261 LDSLSLDGNNLIGSIPPTIG-YLTNLTSLNLG----YNQLSSS-----IPPELMNCSQLQNLVLSHNT--LSGIVPPEI-  327 (408)
Q Consensus       261 L~~L~l~~~~~~~~~~~~~~-~~~~L~~L~l~----~~~~~~~-----~~~~~~~~~~L~~L~l~~~~--~~~~~~~~~-  327 (408)
                      |++|++..+.+.+.....+. .+++|++|+++    .+.+++.     ....+.++++|++|++++|.  +++.....+ 
T Consensus       380 L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~~~~  459 (592)
T 3ogk_B          380 LEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYIG  459 (592)
T ss_dssp             CSEEEEEESCCCHHHHHHHHHHCCSCCEEEEEECSCCSCCSSCCCHHHHHHHHHHCTTCCEEEEECCGGGCCHHHHHHHH
T ss_pred             CeEEEeecCCccHHHHHHHHhhCCCCcEEEEeecCCCccccCchHHHHHHHHHHhCCCCCEEEEecCCCCccHHHHHHHH
Confidence            55555544444332222222 25666666664    3334321     11124456777777776553  332222223 


Q ss_pred             ccCCCccEEEcCCcccccc-CCcCCCCCCCccEEeCCCCccCCcCC----ccccCCCeEEccCCccCCCCCCCc
Q 037302          328 GNLTHLRQLDLSHNFINGT-IPSQLGYIPNISAVDLSKNNLSGVVP----ASVRIIPKLIVSENNLELENSTSS  396 (408)
Q Consensus       328 ~~~~~L~~L~l~~~~~~~~-~~~~~~~~~~L~~L~l~~~~l~~~~~----~~~~~l~~l~l~~n~~~~~~~~~~  396 (408)
                      ..+++|++|++++|++++. .+..+..+++|+.|++++|++.+...    ..+.++++|++++|++++.....+
T Consensus       460 ~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~ls~n~it~~~~~~l  533 (592)
T 3ogk_B          460 QYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCCFSERAIAAAVTKLPSLRYLWVQGYRASMTGQDLM  533 (592)
T ss_dssp             HSCTTCCEEEECSCCSSHHHHHHHHTCCTTCCEEEEESCCCBHHHHHHHHHHCSSCCEEEEESCBCCTTCTTGG
T ss_pred             HhCccceEeeccCCCCCHHHHHHHHhcCcccCeeeccCCCCcHHHHHHHHHhcCccCeeECcCCcCCHHHHHHH
Confidence            2478888888888888763 34455778889999999998764422    235678899999999887644433

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=99.94  E-value=2.6e-26  Score=202.67  Aligned_cols=236  Identities=24%  Similarity=0.204  Sum_probs=160.7

Q ss_pred             CCCCEEEcCCCcCCCCCCccccCCCCCCEEEecCcccccccCcccccccccCeEEccCCc-CCCCCCcccCCCCCccEEE
Q 037302          163 NQLSNLYLAYNNLVGPLPKEVGNMKNLDSLLLNRNSLTGPIPSTIGYLNLGGKLDLSHNR-LDSPIPPTIGNLTNLTSLD  241 (408)
Q Consensus       163 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~-~~~~~~~~l~~~~~L~~L~  241 (408)
                      +++++|+++++.+....+..+..+++|++|++++|.+.+..+..+..++.|++|+++++. +....+..+..+++|++|+
T Consensus        32 ~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~L~  111 (285)
T 1ozn_A           32 AASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLH  111 (285)
T ss_dssp             TTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEEE
T ss_pred             CCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCCCccccCHHHhcCCcCCCEEE
Confidence            345555555555444333445555555555555555554444555556666666666664 5544455666677777777


Q ss_pred             ccCCcccccCCccccCCCCCCEEeCCCCcccccCCccccCCCCCcEEeCCCCccccCCCcCCcCCCCCcEEEcCCCccCC
Q 037302          242 LSSNQLSGLLPREVGNLKYLDSLSLDGNNLIGSIPPTIGYLTNLTSLNLGYNQLSSSIPPELMNCSQLQNLVLSHNTLSG  321 (408)
Q Consensus       242 l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~  321 (408)
                      +++|.+....+..+..+++|++|+++++.+.......+..+++|++|++++|.++...+..+..+++|++|++++|.+.+
T Consensus       112 l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~  191 (285)
T 1ozn_A          112 LDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAH  191 (285)
T ss_dssp             CTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCE
T ss_pred             CCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCcccccCHHHhcCccccCEEECCCCcccc
Confidence            77777766556667777777777777777765555567777888888888888776666667778888888888888877


Q ss_pred             cCCcccccCCCccEEEcCCccccccCCcCCCCCCCccEEeCCCCccCCcCC--ccccCCCeEEccCCccCCCCCCCcCC
Q 037302          322 IVPPEIGNLTHLRQLDLSHNFINGTIPSQLGYIPNISAVDLSKNNLSGVVP--ASVRIIPKLIVSENNLELENSTSSEN  398 (408)
Q Consensus       322 ~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~--~~~~~l~~l~l~~n~~~~~~~~~~~~  398 (408)
                      ..+..+..+++|+.|++++|.+++..+..+..+++|+.|++++|++....+  +....++.+....+.+.+..|+.+.+
T Consensus       192 ~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~~~~~~~~~~l~~~~~~~~~~~c~~p~~l~g  270 (285)
T 1ozn_A          192 VHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDCRARPLWAWLQKFRGSSSEVPCSLPQRLAG  270 (285)
T ss_dssp             ECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEECSGGGHHHHHHHHHCCSEECCCBEEESGGGTT
T ss_pred             cCHhHccCcccccEeeCCCCcCCcCCHHHcccCcccCEEeccCCCccCCCCcHHHHHHHHhcccccCccccCCchHhCC
Confidence            777778888888888888888886666667788888888888888875433  12233445667777888888877654

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=99.94  E-value=9.3e-27  Score=212.05  Aligned_cols=280  Identities=20%  Similarity=0.180  Sum_probs=178.5

Q ss_pred             CCCCcEEeCCCceecccCcccccCCCCCceeecCCccccccCCCcCCCCCCCCEEEcCCCeecccCcccccCCCCCceEe
Q 037302           66 LRNLVELDLSNNILNGSIPLEFGNLKDLDALRLRGNKLDGLIPSSIGNLTNLTHLDLSLNQLSGRLPQEVGNLKNLLSLF  145 (408)
Q Consensus        66 ~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~  145 (408)
                      |+...+.+.+++.+. ..|..+.  ++|++|+++++.++.+.+..+.++++|++|++++|.+....+..+..+++|++|+
T Consensus        30 C~~~~~c~~~~~~l~-~iP~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~  106 (353)
T 2z80_A           30 CDRNGICKGSSGSLN-SIPSGLT--EAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLD  106 (353)
T ss_dssp             ECTTSEEECCSTTCS-SCCTTCC--TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEE
T ss_pred             CCCCeEeeCCCCCcc-ccccccc--ccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEE
Confidence            344455666666666 4454433  5788888888888777766788888888888888877766666777788888888


Q ss_pred             ccCCcccCcCchhhccCCCCCEEEcCCCcCCCCCC-ccccCCCCCCEEEecCcc-cccccCcccccccccCeEEccCCcC
Q 037302          146 LDNNNLTGPIPSTLYHLNQLSNLYLAYNNLVGPLP-KEVGNMKNLDSLLLNRNS-LTGPIPSTIGYLNLGGKLDLSHNRL  223 (408)
Q Consensus       146 l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~-~~~~~~~~L~~L~l~~~~-~~~~~~~~~~~~~~L~~l~l~~~~~  223 (408)
                      +++|.++......+..+++|++|++++|.+..... ..+..+++|+.|++++|. +....+..+..++.|+.+++++|.+
T Consensus       107 Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l  186 (353)
T 2z80_A          107 LSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDL  186 (353)
T ss_dssp             CCSSCCSSCCHHHHTTCTTCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTC
T ss_pred             CCCCcCCcCCHhHhCCCccCCEEECCCCCCcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCCc
Confidence            88887775555557777888888888777764433 356677777777777763 4433344455555555555555555


Q ss_pred             CCCCCcccCCCCCccEEEccCCcccccCCccccCCCCCCEEeCCCCcccccCCccccCCCCCcEEeCCCCccccCCCcCC
Q 037302          224 DSPIPPTIGNLTNLTSLDLSSNQLSGLLPREVGNLKYLDSLSLDGNNLIGSIPPTIGYLTNLTSLNLGYNQLSSSIPPEL  303 (408)
Q Consensus       224 ~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~  303 (408)
                      ....+..+..+++|++|++++|.+.......+..+++|+.|++++                        |.++......+
T Consensus       187 ~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~------------------------n~l~~~~~~~l  242 (353)
T 2z80_A          187 QSYEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRD------------------------TDLDTFHFSEL  242 (353)
T ss_dssp             CEECTTTTTTCSEEEEEEEECSCSTTHHHHHHHHTTTEEEEEEES------------------------CBCTTCCCC--
T ss_pred             CccCHHHHhccccCCeecCCCCccccchhhhhhhcccccEEECCC------------------------Ccccccccccc
Confidence            544445555555555555555554422222223344455555544                        44443222211


Q ss_pred             ---cCCCCCcEEEcCCCccCC----cCCcccccCCCccEEEcCCccccccCCcCCCCCCCccEEeCCCCccCCcCC
Q 037302          304 ---MNCSQLQNLVLSHNTLSG----IVPPEIGNLTHLRQLDLSHNFINGTIPSQLGYIPNISAVDLSKNNLSGVVP  372 (408)
Q Consensus       304 ---~~~~~L~~L~l~~~~~~~----~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~  372 (408)
                         ...+.++.++++++.+.+    ..+..+..+++|++|++++|+++...+..+..+++|+.|++++|++.+..|
T Consensus       243 ~~~~~~~~l~~l~L~~~~l~~~~l~~l~~~l~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~~~~~~~  318 (353)
T 2z80_A          243 STGETNSLIKKFTFRNVKITDESLFQVMKLLNQISGLLELEFSRNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP  318 (353)
T ss_dssp             ----CCCCCCEEEEESCBCCHHHHHHHHHHHHTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred             ccccccchhhccccccccccCcchhhhHHHHhcccCCCEEECCCCCCCccCHHHHhcCCCCCEEEeeCCCccCcCC
Confidence               234566777777766543    234566788899999999998884444446888999999999998886544

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=99.94  E-value=1.8e-26  Score=206.01  Aligned_cols=282  Identities=24%  Similarity=0.244  Sum_probs=189.2

Q ss_pred             cEEeCCCceecccCcccccCCCCCceeecCCccccccCCCcCCCCCCCCEEEcCCCeecccC--cccccCCCCCceEecc
Q 037302           70 VELDLSNNILNGSIPLEFGNLKDLDALRLRGNKLDGLIPSSIGNLTNLTHLDLSLNQLSGRL--PQEVGNLKNLLSLFLD  147 (408)
Q Consensus        70 ~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~l~~l~~L~~L~l~~~~~~~~~--~~~~~~l~~L~~L~l~  147 (408)
                      +.++.+++.+. ..|..+.  ++|++|+++++.+..+.+..|.++++|++|++++|.+....  +..+..+++|++|+++
T Consensus        10 ~~l~c~~~~l~-~ip~~~~--~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls   86 (306)
T 2z66_A           10 TEIRCNSKGLT-SVPTGIP--SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLS   86 (306)
T ss_dssp             TEEECCSSCCS-SCCSCCC--TTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECC
T ss_pred             CEEEcCCCCcc-cCCCCCC--CCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECC
Confidence            46777777776 4554443  68999999999998777777899999999999999886332  4566779999999999


Q ss_pred             CCcccCcCchhhccCCCCCEEEcCCCcCCCCCC-ccccCCCCCCEEEecCcccccccCcccccccccCeEEccCCcCCCC
Q 037302          148 NNNLTGPIPSTLYHLNQLSNLYLAYNNLVGPLP-KEVGNMKNLDSLLLNRNSLTGPIPSTIGYLNLGGKLDLSHNRLDSP  226 (408)
Q Consensus       148 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~  226 (408)
                      +|.+. ..+..+..+++|++|++++|.+..... ..+..+++|+.|++++|.+....+..                    
T Consensus        87 ~n~i~-~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~--------------------  145 (306)
T 2z66_A           87 FNGVI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGI--------------------  145 (306)
T ss_dssp             SCSEE-EEEEEEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTT--------------------
T ss_pred             CCccc-cChhhcCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCccchhh--------------------
Confidence            99987 455568889999999999998865433 45677777888877777665443333                    


Q ss_pred             CCcccCCCCCccEEEccCCcccc-cCCccccCCCCCCEEeCCCCcccccCCccccCCCCCcEEeCCCCccccCCCcCCcC
Q 037302          227 IPPTIGNLTNLTSLDLSSNQLSG-LLPREVGNLKYLDSLSLDGNNLIGSIPPTIGYLTNLTSLNLGYNQLSSSIPPELMN  305 (408)
Q Consensus       227 ~~~~l~~~~~L~~L~l~~~~~~~-~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~  305 (408)
                          +..+++|++|++++|.+.+ ..+..+..+++|++|++++|.+....+..+..+++|++|++++|.++...+..+..
T Consensus       146 ----~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~  221 (306)
T 2z66_A          146 ----FNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKC  221 (306)
T ss_dssp             ----TTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCSBCCSGGGTT
T ss_pred             ----cccCcCCCEEECCCCccccccchhHHhhCcCCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCccCccChhhccC
Confidence                3444555555555555543 24445555666666666666665555555666666666666666666555555666


Q ss_pred             CCCCcEEEcCCCccCCcCCcccccCC-CccEEEcCCccccccCC--cCCCCCCCccEEeCCCCccCCcCCccccCCC
Q 037302          306 CSQLQNLVLSHNTLSGIVPPEIGNLT-HLRQLDLSHNFINGTIP--SQLGYIPNISAVDLSKNNLSGVVPASVRIIP  379 (408)
Q Consensus       306 ~~~L~~L~l~~~~~~~~~~~~~~~~~-~L~~L~l~~~~~~~~~~--~~~~~~~~L~~L~l~~~~l~~~~~~~~~~l~  379 (408)
                      +++|++|++++|++.+..+..+..++ +|++|++++|+++..-.  .....+...+.+.+..+.+....|..+.+..
T Consensus       222 l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~L~L~~N~~~~~c~~~~~~~~l~~~~~~~~~~~~~~C~~p~~~~g~~  298 (306)
T 2z66_A          222 LNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTCEHQSFLQWIKDQRQLLVEVERMECATPSDKQGMP  298 (306)
T ss_dssp             CTTCCEEECTTSCCCBCSSSSCCCCCTTCCEEECTTCCEECSGGGHHHHHHHHHTGGGBSCGGGCBEEESGGGTTCB
T ss_pred             cccCCEeECCCCCCcccCHHHHHhhhccCCEEEccCCCeecccChHHHHHHHHhhhhhhccccccccCCchhhCCce
Confidence            67777777777776666666666663 67777777776653211  1112233444455556666666666665544

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=99.94  E-value=2.1e-26  Score=209.71  Aligned_cols=254  Identities=21%  Similarity=0.210  Sum_probs=134.0

Q ss_pred             CCcEEeCCCceecccCcccccCCCCCceeecCCccccccCCCcCCCCCCCCEEEcCCCeecccCcccccCCCCCceEecc
Q 037302           68 NLVELDLSNNILNGSIPLEFGNLKDLDALRLRGNKLDGLIPSSIGNLTNLTHLDLSLNQLSGRLPQEVGNLKNLLSLFLD  147 (408)
Q Consensus        68 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~  147 (408)
                      +|++|+++++.+....+..+.++++|++|++++|.++.+.+..|.++++|++|++++|.+....+..+..+++|++|+++
T Consensus        53 ~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~  132 (353)
T 2z80_A           53 AVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLL  132 (353)
T ss_dssp             TCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSSCCHHHHTTCTTCSEEECT
T ss_pred             cCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCCcCCcCCHhHhCCCccCCEEECC
Confidence            44444554444443333344445555555555554444444444455555555555554443333334445555555555


Q ss_pred             CCcccCcCc-hhhccCCCCCEEEcCCCc-CCCCCCccccCCCCCCEEEecCcccccccCcccccccccCeEEccCCcCCC
Q 037302          148 NNNLTGPIP-STLYHLNQLSNLYLAYNN-LVGPLPKEVGNMKNLDSLLLNRNSLTGPIPSTIGYLNLGGKLDLSHNRLDS  225 (408)
Q Consensus       148 ~~~~~~~~~-~~~~~~~~L~~L~l~~~~-~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~  225 (408)
                      +|.+..... ..+..+++|++|++++|. +....+..+..+++|+.|++++|.+.+..+..+..+++|++++++++.+..
T Consensus       133 ~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~  212 (353)
T 2z80_A          133 GNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHIL  212 (353)
T ss_dssp             TCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSCSTT
T ss_pred             CCCCcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCCcCccCHHHHhccccCCeecCCCCcccc
Confidence            554443222 234445555555555542 322223344555555555555555544444455555555555555555433


Q ss_pred             CCCcccCCCCCccEEEccCCcccccCCccc---cCCCCCCEEeCCCCccccc----CCccccCCCCCcEEeCCCCccccC
Q 037302          226 PIPPTIGNLTNLTSLDLSSNQLSGLLPREV---GNLKYLDSLSLDGNNLIGS----IPPTIGYLTNLTSLNLGYNQLSSS  298 (408)
Q Consensus       226 ~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~---~~~~~L~~L~l~~~~~~~~----~~~~~~~~~~L~~L~l~~~~~~~~  298 (408)
                      .....+..+++|+.|++++|.+.+.....+   ...+.++.+++.++.+.+.    .+..+..+++|++|++++|.++..
T Consensus       213 ~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~~~~l~~l~L~~~~l~~~~l~~l~~~l~~l~~L~~L~Ls~N~l~~i  292 (353)
T 2z80_A          213 LLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQVMKLLNQISGLLELEFSRNQLKSV  292 (353)
T ss_dssp             HHHHHHHHTTTEEEEEEESCBCTTCCCC------CCCCCCEEEEESCBCCHHHHHHHHHHHHTCTTCCEEECCSSCCCCC
T ss_pred             chhhhhhhcccccEEECCCCccccccccccccccccchhhccccccccccCcchhhhHHHHhcccCCCEEECCCCCCCcc
Confidence            222222334566666666665553322222   2345566666666655432    344567788888888888888855


Q ss_pred             CCcCCcCCCCCcEEEcCCCccCC
Q 037302          299 IPPELMNCSQLQNLVLSHNTLSG  321 (408)
Q Consensus       299 ~~~~~~~~~~L~~L~l~~~~~~~  321 (408)
                      ....+.++++|++|++++|++.+
T Consensus       293 ~~~~~~~l~~L~~L~L~~N~~~~  315 (353)
T 2z80_A          293 PDGIFDRLTSLQKIWLHTNPWDC  315 (353)
T ss_dssp             CTTTTTTCTTCCEEECCSSCBCC
T ss_pred             CHHHHhcCCCCCEEEeeCCCccC
Confidence            44446788888888888888763

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=99.94  E-value=8.2e-30  Score=248.62  Aligned_cols=369  Identities=13%  Similarity=0.074  Sum_probs=231.6

Q ss_pred             ccchhhccCCCCcEEeCCCCcCC---CCCccc------------ccCCCCCcEEeCCCceecccCcccccC-CCC-Ccee
Q 037302           34 RIPSEIGALSKLEELALPYNSLT---GTIPAE------------IGSLRNLVELDLSNNILNGSIPLEFGN-LKD-LDAL   96 (408)
Q Consensus        34 ~~~~~~~~~~~L~~L~l~~~~~~---~~~~~~------------~~~~~~L~~L~l~~~~~~~~~~~~~~~-l~~-L~~L   96 (408)
                      ..+..+.++++|++|+++++...   +..+..            +..+++|++|++++|.+.+..+..+.. +++ |++|
T Consensus        64 ~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~L~~L  143 (592)
T 3ogk_B           64 TPDRLSRRFPNLRSLKLKGKPRAAMFNLIPENWGGYVTPWVTEISNNLRQLKSVHFRRMIVSDLDLDRLAKARADDLETL  143 (592)
T ss_dssp             CHHHHHHHCTTCSEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCBCCHHHHHHHHHHHGGGCCEE
T ss_pred             ChHHHHHhCCCCeEEEecCCcchhhcccccccccccchHHHHHHHhhCCCCCeEEeeccEecHHHHHHHHHhccccCcEE
Confidence            34455788999999999886421   111111            227899999999999887655555554 455 9999


Q ss_pred             ecCCcc-cccc-CCCcCCCCCCCCEEEcCCCeecccC----cccccCCCCCceEeccCCcccC----cCchhhccCCCCC
Q 037302           97 RLRGNK-LDGL-IPSSIGNLTNLTHLDLSLNQLSGRL----PQEVGNLKNLLSLFLDNNNLTG----PIPSTLYHLNQLS  166 (408)
Q Consensus        97 ~l~~~~-i~~~-~~~~l~~l~~L~~L~l~~~~~~~~~----~~~~~~l~~L~~L~l~~~~~~~----~~~~~~~~~~~L~  166 (408)
                      ++++|. +... .+.....+++|++|++++|.+.+..    ......+++|++|+++++.+..    .....+..+++|+
T Consensus       144 ~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~  223 (592)
T 3ogk_B          144 KLDKCSGFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLV  223 (592)
T ss_dssp             EEESCEEEEHHHHHHHHHHCTTCSEEECTTCEEECCCSHHHHHHHHHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCC
T ss_pred             ECcCCCCcCHHHHHHHHhhCCCCCEEECccccccCcchhHHHHHHhcCCCccEEEeeccCCCccCHHHHHHHHhhCCCCc
Confidence            999886 2211 1122347899999999999886542    2234578999999999988762    2333456799999


Q ss_pred             EEEcCCCcCCCCCCccccCCCCCCEEEecCcccc---cccCcccccccccCeEEccCCcCCCCCCcccCCCCCccEEEcc
Q 037302          167 NLYLAYNNLVGPLPKEVGNMKNLDSLLLNRNSLT---GPIPSTIGYLNLGGKLDLSHNRLDSPIPPTIGNLTNLTSLDLS  243 (408)
Q Consensus       167 ~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~---~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~  243 (408)
                      .|++++|.+.. .+..+..+++|++|.+......   ......+..+++|+.+.+..... ...+..+..+++|++|+++
T Consensus       224 ~L~L~~~~~~~-l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~-~~l~~~~~~~~~L~~L~Ls  301 (592)
T 3ogk_B          224 SVKVGDFEILE-LVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGP-NEMPILFPFAAQIRKLDLL  301 (592)
T ss_dssp             EEECSSCBGGG-GHHHHHHCTTCCEEEECBCCCCTTCTTSSSCCCCCTTCCEEEETTCCT-TTGGGGGGGGGGCCEEEET
T ss_pred             EEeccCccHHH-HHHHHhhhhHHHhhcccccccccchHHHHHHhhccccccccCccccch-hHHHHHHhhcCCCcEEecC
Confidence            99999988764 4567888999999999853322   23345667788999999987532 3455667788999999999


Q ss_pred             CCcccccCC-ccccCCCCCCEEeCCCCcccccCCccccCCCCCcEEeCC-------------------------------
Q 037302          244 SNQLSGLLP-REVGNLKYLDSLSLDGNNLIGSIPPTIGYLTNLTSLNLG-------------------------------  291 (408)
Q Consensus       244 ~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~-------------------------------  291 (408)
                      +|.+++... ..+..+++|+.|++.++............+++|++|+++                               
T Consensus       302 ~~~l~~~~~~~~~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~  381 (592)
T 3ogk_B          302 YALLETEDHCTLIQKCPNLEVLETRNVIGDRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQELE  381 (592)
T ss_dssp             TCCCCHHHHHHHHTTCTTCCEEEEEGGGHHHHHHHHHHHCTTCCEEEEECCCCSSTTSSTTCCCCHHHHHHHHHHCTTCS
T ss_pred             CCcCCHHHHHHHHHhCcCCCEEeccCccCHHHHHHHHHhCCCCCEEEeecCccccccccccCccCHHHHHHHHhhCccCe
Confidence            998654332 334667777777776332111122223445556666665                               


Q ss_pred             -----CCccccCCCcCCcC-CCCCcEEEcC----CCccCCc-----CCcccccCCCccEEEcCCcc--ccccCCcCC-CC
Q 037302          292 -----YNQLSSSIPPELMN-CSQLQNLVLS----HNTLSGI-----VPPEIGNLTHLRQLDLSHNF--INGTIPSQL-GY  353 (408)
Q Consensus       292 -----~~~~~~~~~~~~~~-~~~L~~L~l~----~~~~~~~-----~~~~~~~~~~L~~L~l~~~~--~~~~~~~~~-~~  353 (408)
                           .+.+++.....+.. +++|+.|+++    .+.+++.     ....+.++++|++|++++|.  +++..+..+ ..
T Consensus       382 ~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~~~~~~  461 (592)
T 3ogk_B          382 YMAVYVSDITNESLESIGTYLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQY  461 (592)
T ss_dssp             EEEEEESCCCHHHHHHHHHHCCSCCEEEEEECSCCSCCSSCCCHHHHHHHHHHCTTCCEEEEECCGGGCCHHHHHHHHHS
T ss_pred             EEEeecCCccHHHHHHHHhhCCCCcEEEEeecCCCccccCchHHHHHHHHHHhCCCCCEEEEecCCCCccHHHHHHHHHh
Confidence                 33332222222222 4555555554    2233321     11124456677777776543  443333333 24


Q ss_pred             CCCccEEeCCCCccCCcC-C---ccccCCCeEEccCCccCCC-CCCCcCCCCCCCC
Q 037302          354 IPNISAVDLSKNNLSGVV-P---ASVRIIPKLIVSENNLELE-NSTSSENAPPPQA  404 (408)
Q Consensus       354 ~~~L~~L~l~~~~l~~~~-~---~~~~~l~~l~l~~n~~~~~-~~~~~~~~~~~~~  404 (408)
                      +++|+.|++++|++.+.. +   ....++++|++++|++++. ++.....++.|+.
T Consensus       462 ~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~  517 (592)
T 3ogk_B          462 SPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCCFSERAIAAAVTKLPSLRY  517 (592)
T ss_dssp             CTTCCEEEECSCCSSHHHHHHHHTCCTTCCEEEEESCCCBHHHHHHHHHHCSSCCE
T ss_pred             CccceEeeccCCCCCHHHHHHHHhcCcccCeeeccCCCCcHHHHHHHHHhcCccCe
Confidence            677888888888876532 2   2345677888888887654 3444445555543

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=99.94  E-value=5.8e-25  Score=206.16  Aligned_cols=247  Identities=24%  Similarity=0.236  Sum_probs=148.3

Q ss_pred             CCceeecCCccccccCCCcCCCCCCCCEEEcCCCeecccCcccccCCCCCceEeccCCcccCcCchhhccCCCCCEEEcC
Q 037302           92 DLDALRLRGNKLDGLIPSSIGNLTNLTHLDLSLNQLSGRLPQEVGNLKNLLSLFLDNNNLTGPIPSTLYHLNQLSNLYLA  171 (408)
Q Consensus        92 ~L~~L~l~~~~i~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~  171 (408)
                      ..+.++..+..++.++ ..+  .+++++|++++|.+....+..|..+++|++|++++|.+....+..+.++++|++|+++
T Consensus        44 ~~~~v~c~~~~l~~iP-~~~--~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~  120 (440)
T 3zyj_A           44 QFSKVICVRKNLREVP-DGI--STNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELF  120 (440)
T ss_dssp             TSCEEECCSCCCSSCC-SCC--CTTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECC
T ss_pred             CCCEEEeCCCCcCcCC-CCC--CCCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECC
Confidence            3567777777766443 333  2678888888888876666778888888888888888776666777778888888888


Q ss_pred             CCcCCCCCCccccCCCCCCEEEecCcccccccCcccccccccCeEEccCC-cCCCCCCcccCCCCCccEEEccCCccccc
Q 037302          172 YNNLVGPLPKEVGNMKNLDSLLLNRNSLTGPIPSTIGYLNLGGKLDLSHN-RLDSPIPPTIGNLTNLTSLDLSSNQLSGL  250 (408)
Q Consensus       172 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~-~~~~~~~~~l~~~~~L~~L~l~~~~~~~~  250 (408)
                      +|.+.......+..+++|++|++++|.+.......+..+++|+.|+++++ .+.......+..+++|++|++++|.+...
T Consensus       121 ~n~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~  200 (440)
T 3zyj_A          121 DNRLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLREI  200 (440)
T ss_dssp             SSCCSSCCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCSSC
T ss_pred             CCcCCeeCHhHhhccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCccc
Confidence            88777655556777777888877777766555555666666666666653 23322333455555555555555555422


Q ss_pred             CCccccCCCCCCEEeCCCCcccccCCccccCCCCCcEEeCCCCccccCCCcCCcCCCCCcEEEcCCCccCCcCCcccccC
Q 037302          251 LPREVGNLKYLDSLSLDGNNLIGSIPPTIGYLTNLTSLNLGYNQLSSSIPPELMNCSQLQNLVLSHNTLSGIVPPEIGNL  330 (408)
Q Consensus       251 ~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~  330 (408)
                       + .+..+++|+.|++++|.+....+..+..+++|++|++++|.++...+..+.++++|++|++++|+++......+..+
T Consensus       201 -~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l  278 (440)
T 3zyj_A          201 -P-NLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPL  278 (440)
T ss_dssp             -C-CCTTCSSCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCCCCCCTTTTSSC
T ss_pred             -c-ccCCCcccCEEECCCCccCccChhhhccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCCCCccChhHhccc
Confidence             1 23444455555555554444444444445555555555555544444444444555555555555444444444444


Q ss_pred             CCccEEEcCCccc
Q 037302          331 THLRQLDLSHNFI  343 (408)
Q Consensus       331 ~~L~~L~l~~~~~  343 (408)
                      ++|+.|++++|++
T Consensus       279 ~~L~~L~L~~Np~  291 (440)
T 3zyj_A          279 HHLERIHLHHNPW  291 (440)
T ss_dssp             TTCCEEECCSSCE
T ss_pred             cCCCEEEcCCCCc
Confidence            4555555554443

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=99.94  E-value=5.7e-25  Score=206.90  Aligned_cols=246  Identities=22%  Similarity=0.194  Sum_probs=136.4

Q ss_pred             CCceeecCCccccccCCCcCCCCCCCCEEEcCCCeecccCcccccCCCCCceEeccCCcccCcCchhhccCCCCCEEEcC
Q 037302           92 DLDALRLRGNKLDGLIPSSIGNLTNLTHLDLSLNQLSGRLPQEVGNLKNLLSLFLDNNNLTGPIPSTLYHLNQLSNLYLA  171 (408)
Q Consensus        92 ~L~~L~l~~~~i~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~  171 (408)
                      ....++.++..++.++ ..+  .+++++|++++|.+....+..|..+++|++|++++|.+....+..+.++++|++|+++
T Consensus        55 ~~~~v~c~~~~l~~iP-~~~--~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~  131 (452)
T 3zyi_A           55 QFSKVVCTRRGLSEVP-QGI--PSNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELF  131 (452)
T ss_dssp             SSCEEECCSSCCSSCC-SCC--CTTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECC
T ss_pred             CCcEEEECCCCcCccC-CCC--CCCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECC
Confidence            3456677666666443 323  2577888888887776666777777788888887777776666667777777777777


Q ss_pred             CCcCCCCCCccccCCCCCCEEEecCcccccccCcccccccccCeEEccCC-cCCCCCCcccCCCCCccEEEccCCccccc
Q 037302          172 YNNLVGPLPKEVGNMKNLDSLLLNRNSLTGPIPSTIGYLNLGGKLDLSHN-RLDSPIPPTIGNLTNLTSLDLSSNQLSGL  250 (408)
Q Consensus       172 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~-~~~~~~~~~l~~~~~L~~L~l~~~~~~~~  250 (408)
                      +|.+....+..+..+++|++|++++|.+.......+..++.|+.|+++++ .+.......+..+++|++|++++|.+.+.
T Consensus       132 ~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~  211 (452)
T 3zyi_A          132 DNWLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDM  211 (452)
T ss_dssp             SSCCSBCCTTTSSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSSC
T ss_pred             CCcCCccChhhhcccCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCccccc
Confidence            77766555555666777777777777665444445555556666665553 22222233344455555555555544422


Q ss_pred             CCccccCCCCCCEEeCCCCcccccCCccccCCCCCcEEeCCCCccccCCCcCCcCCCCCcEEEcCCCccCCcCCcccccC
Q 037302          251 LPREVGNLKYLDSLSLDGNNLIGSIPPTIGYLTNLTSLNLGYNQLSSSIPPELMNCSQLQNLVLSHNTLSGIVPPEIGNL  330 (408)
Q Consensus       251 ~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~  330 (408)
                        ..+..+++|+.|++++|.+....+..+..+++|++|++++|.++...+..+..+++|+.|++++|+++......+..+
T Consensus       212 --~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l  289 (452)
T 3zyi_A          212 --PNLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPL  289 (452)
T ss_dssp             --CCCTTCTTCCEEECTTSCCSEECGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTSSTTC
T ss_pred             --ccccccccccEEECcCCcCcccCcccccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcCCccChHHhccc
Confidence              123344444444444444443334444444444444444444444444444444444444444444443333344444


Q ss_pred             CCccEEEcCCcc
Q 037302          331 THLRQLDLSHNF  342 (408)
Q Consensus       331 ~~L~~L~l~~~~  342 (408)
                      ++|+.|++++|+
T Consensus       290 ~~L~~L~L~~Np  301 (452)
T 3zyi_A          290 RYLVELHLHHNP  301 (452)
T ss_dssp             TTCCEEECCSSC
T ss_pred             cCCCEEEccCCC
Confidence            444444444443

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=99.94  E-value=8.9e-26  Score=199.28  Aligned_cols=256  Identities=21%  Similarity=0.183  Sum_probs=146.5

Q ss_pred             ceeecCCccccccCCCcCCCCCCCCEEEcCCCeecccCcccccCCCCCceEeccCCcccCcCchhhccCCCCCEEEcCCC
Q 037302           94 DALRLRGNKLDGLIPSSIGNLTNLTHLDLSLNQLSGRLPQEVGNLKNLLSLFLDNNNLTGPIPSTLYHLNQLSNLYLAYN  173 (408)
Q Consensus        94 ~~L~l~~~~i~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~  173 (408)
                      +.++.++..++.++ ..  ..++|++|+++++.+....+..+..+++|++|+++++.++...+..+..+++|++|++++|
T Consensus        14 ~~~~c~~~~l~~ip-~~--~~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n   90 (285)
T 1ozn_A           14 VTTSCPQQGLQAVP-VG--IPAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDN   90 (285)
T ss_dssp             CEEECCSSCCSSCC-TT--CCTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSC
T ss_pred             eEEEcCcCCcccCC-cC--CCCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCC
Confidence            56666666665443 22  2467777777777777555566777777777777777766555566666777777777766


Q ss_pred             c-CCCCCCccccCCCCCCEEEecCcccccccCcccccccccCeEEccCCcCCCCCCcccCCCCCccEEEccCCcccccCC
Q 037302          174 N-LVGPLPKEVGNMKNLDSLLLNRNSLTGPIPSTIGYLNLGGKLDLSHNRLDSPIPPTIGNLTNLTSLDLSSNQLSGLLP  252 (408)
Q Consensus       174 ~-~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~  252 (408)
                      . +....+..+..+++|++|++++|.+.+..+.                        .+..+++|++|++++|.+.....
T Consensus        91 ~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~------------------------~~~~l~~L~~L~l~~n~l~~~~~  146 (285)
T 1ozn_A           91 AQLRSVDPATFHGLGRLHTLHLDRCGLQELGPG------------------------LFRGLAALQYLYLQDNALQALPD  146 (285)
T ss_dssp             TTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTT------------------------TTTTCTTCCEEECCSSCCCCCCT
T ss_pred             CCccccCHHHhcCCcCCCEEECCCCcCCEECHh------------------------HhhCCcCCCEEECCCCcccccCH
Confidence            5 4444445555566666666666555443333                        44444555555555555544334


Q ss_pred             ccccCCCCCCEEeCCCCcccccCCccccCCCCCcEEeCCCCccccCCCcCCcCCCCCcEEEcCCCccCCcCCcccccCCC
Q 037302          253 REVGNLKYLDSLSLDGNNLIGSIPPTIGYLTNLTSLNLGYNQLSSSIPPELMNCSQLQNLVLSHNTLSGIVPPEIGNLTH  332 (408)
Q Consensus       253 ~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~  332 (408)
                      ..+..+++|++|++++|.+.......+..+++|++|++++|.++...+..+..+++|++|++++|.+++..+..+..+++
T Consensus       147 ~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~  226 (285)
T 1ozn_A          147 DTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRA  226 (285)
T ss_dssp             TTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTT
T ss_pred             hHhccCCCccEEECCCCcccccCHHHhcCccccCEEECCCCcccccCHhHccCcccccEeeCCCCcCCcCCHHHcccCcc
Confidence            44455555555555555555444444555666666666666666555555666666666666666666544455666666


Q ss_pred             ccEEEcCCccccccCCcCCCCCCCccEEeCCCCccCCcCCccccC
Q 037302          333 LRQLDLSHNFINGTIPSQLGYIPNISAVDLSKNNLSGVVPASVRI  377 (408)
Q Consensus       333 L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~  377 (408)
                      |+.|++++|++...-+. ......++.+....+.+....|+.+..
T Consensus       227 L~~L~l~~N~~~c~~~~-~~~~~~l~~~~~~~~~~~c~~p~~l~g  270 (285)
T 1ozn_A          227 LQYLRLNDNPWVCDCRA-RPLWAWLQKFRGSSSEVPCSLPQRLAG  270 (285)
T ss_dssp             CCEEECCSSCEECSGGG-HHHHHHHHHCCSEECCCBEEESGGGTT
T ss_pred             cCEEeccCCCccCCCCc-HHHHHHHHhcccccCccccCCchHhCC
Confidence            66666666665522111 011122344445555555555555544

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=99.93  E-value=2.8e-24  Score=201.55  Aligned_cols=247  Identities=23%  Similarity=0.223  Sum_probs=216.3

Q ss_pred             CcEEeCCCceecccCcccccCCCCCceeecCCccccccCCCcCCCCCCCCEEEcCCCeecccCcccccCCCCCceEeccC
Q 037302           69 LVELDLSNNILNGSIPLEFGNLKDLDALRLRGNKLDGLIPSSIGNLTNLTHLDLSLNQLSGRLPQEVGNLKNLLSLFLDN  148 (408)
Q Consensus        69 L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~  148 (408)
                      ...++..+..+. ..|..+.  ++++.|++++|.+..+.+..|.++++|++|++++|.+....+..|..+++|++|++++
T Consensus        45 ~~~v~c~~~~l~-~iP~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~  121 (440)
T 3zyj_A           45 FSKVICVRKNLR-EVPDGIS--TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFD  121 (440)
T ss_dssp             SCEEECCSCCCS-SCCSCCC--TTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCS
T ss_pred             CCEEEeCCCCcC-cCCCCCC--CCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCC
Confidence            457777777776 5565544  7899999999999988889999999999999999999877778899999999999999


Q ss_pred             CcccCcCchhhccCCCCCEEEcCCCcCCCCCCccccCCCCCCEEEecCcc-cccccCcccccccccCeEEccCCcCCCCC
Q 037302          149 NNLTGPIPSTLYHLNQLSNLYLAYNNLVGPLPKEVGNMKNLDSLLLNRNS-LTGPIPSTIGYLNLGGKLDLSHNRLDSPI  227 (408)
Q Consensus       149 ~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~-~~~~~~~~~~~~~~L~~l~l~~~~~~~~~  227 (408)
                      |.++......+..+++|++|++++|.+.......+..+++|+.|+++++. +.......+..+++|+.|++++|.+... 
T Consensus       122 n~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~-  200 (440)
T 3zyj_A          122 NRLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLREI-  200 (440)
T ss_dssp             SCCSSCCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCSSC-
T ss_pred             CcCCeeCHhHhhccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCccc-
Confidence            99987767788999999999999999887666788999999999999854 4444455788899999999999988754 


Q ss_pred             CcccCCCCCccEEEccCCcccccCCccccCCCCCCEEeCCCCcccccCCccccCCCCCcEEeCCCCccccCCCcCCcCCC
Q 037302          228 PPTIGNLTNLTSLDLSSNQLSGLLPREVGNLKYLDSLSLDGNNLIGSIPPTIGYLTNLTSLNLGYNQLSSSIPPELMNCS  307 (408)
Q Consensus       228 ~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~  307 (408)
                      + .+..+++|+.|++++|.+....+..+..+++|+.|++++|.+....+..+..+++|++|++++|.++...+..+..++
T Consensus       201 ~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~  279 (440)
T 3zyj_A          201 P-NLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLH  279 (440)
T ss_dssp             C-CCTTCSSCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCCCCCCTTTTSSCT
T ss_pred             c-ccCCCcccCEEECCCCccCccChhhhccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCCCCccChhHhcccc
Confidence            3 477889999999999999988888899999999999999999888888899999999999999999988778888999


Q ss_pred             CCcEEEcCCCccC
Q 037302          308 QLQNLVLSHNTLS  320 (408)
Q Consensus       308 ~L~~L~l~~~~~~  320 (408)
                      +|+.|++++|++.
T Consensus       280 ~L~~L~L~~Np~~  292 (440)
T 3zyj_A          280 HLERIHLHHNPWN  292 (440)
T ss_dssp             TCCEEECCSSCEE
T ss_pred             CCCEEEcCCCCcc
Confidence            9999999999875

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=99.93  E-value=2.6e-24  Score=202.46  Aligned_cols=246  Identities=23%  Similarity=0.214  Sum_probs=133.7

Q ss_pred             cEEeCCCCcCCCCCcccccCCCCCcEEeCCCceecccCcccccCCCCCceeecCCccccccCCCcCCCCCCCCEEEcCCC
Q 037302           46 EELALPYNSLTGTIPAEIGSLRNLVELDLSNNILNGSIPLEFGNLKDLDALRLRGNKLDGLIPSSIGNLTNLTHLDLSLN  125 (408)
Q Consensus        46 ~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~l~~l~~L~~L~l~~~  125 (408)
                      +.++..+..++ ..|..+.  +++++|++++|.+....+..|.++++|++|++++|.+..+.+..|.++++|++|++++|
T Consensus        57 ~~v~c~~~~l~-~iP~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n  133 (452)
T 3zyi_A           57 SKVVCTRRGLS-EVPQGIP--SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDN  133 (452)
T ss_dssp             CEEECCSSCCS-SCCSCCC--TTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred             cEEEECCCCcC-ccCCCCC--CCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCC
Confidence            44455444443 2222222  35566666666555545555555566666666665555555555555556666666555


Q ss_pred             eecccCcccccCCCCCceEeccCCcccCcCchhhccCCCCCEEEcCCCcCCCCCCccccCCCCCCEEEecCcccccccCc
Q 037302          126 QLSGRLPQEVGNLKNLLSLFLDNNNLTGPIPSTLYHLNQLSNLYLAYNNLVGPLPKEVGNMKNLDSLLLNRNSLTGPIPS  205 (408)
Q Consensus       126 ~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~  205 (408)
                      .+....+..+..+++|++|++++|.+.......+..+++|+.|+++++..                       +......
T Consensus       134 ~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~-----------------------l~~i~~~  190 (452)
T 3zyi_A          134 WLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKK-----------------------LEYISEG  190 (452)
T ss_dssp             CCSBCCTTTSSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTT-----------------------CCEECTT
T ss_pred             cCCccChhhhcccCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCCC-----------------------ccccChh
Confidence            55544444455555555555555555544444455555555555554322                       2212222


Q ss_pred             ccccccccCeEEccCCcCCCCCCcccCCCCCccEEEccCCcccccCCccccCCCCCCEEeCCCCcccccCCccccCCCCC
Q 037302          206 TIGYLNLGGKLDLSHNRLDSPIPPTIGNLTNLTSLDLSSNQLSGLLPREVGNLKYLDSLSLDGNNLIGSIPPTIGYLTNL  285 (408)
Q Consensus       206 ~~~~~~~L~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L  285 (408)
                      .+..+++|+.|++++|.+...  ..+..+++|+.|++++|.+.+..+..+..+++|+.|++++|.+....+..+..+++|
T Consensus       191 ~~~~l~~L~~L~L~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L  268 (452)
T 3zyi_A          191 AFEGLFNLKYLNLGMCNIKDM--PNLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASL  268 (452)
T ss_dssp             TTTTCTTCCEEECTTSCCSSC--CCCTTCTTCCEEECTTSCCSEECGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTC
T ss_pred             hccCCCCCCEEECCCCccccc--ccccccccccEEECcCCcCcccCcccccCccCCCEEEeCCCcCceECHHHhcCCCCC
Confidence            344444555555555544432  134455666666666666665555556666666666666666655555556666666


Q ss_pred             cEEeCCCCccccCCCcCCcCCCCCcEEEcCCCcc
Q 037302          286 TSLNLGYNQLSSSIPPELMNCSQLQNLVLSHNTL  319 (408)
Q Consensus       286 ~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~  319 (408)
                      ++|++++|.++......+..+++|+.|++++|++
T Consensus       269 ~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~  302 (452)
T 3zyi_A          269 VELNLAHNNLSSLPHDLFTPLRYLVELHLHHNPW  302 (452)
T ss_dssp             CEEECCSSCCSCCCTTSSTTCTTCCEEECCSSCE
T ss_pred             CEEECCCCcCCccChHHhccccCCCEEEccCCCc
Confidence            6666666666655555556666666666666654

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=99.93  E-value=1.6e-24  Score=194.77  Aligned_cols=234  Identities=24%  Similarity=0.337  Sum_probs=136.0

Q ss_pred             CCCCEEEcCCCeecccCcccccCCCCCceEeccCCcccCcCchhhccCCCCCEEEcCCCcCCCCCCccccCCCCCCEEEe
Q 037302          115 TNLTHLDLSLNQLSGRLPQEVGNLKNLLSLFLDNNNLTGPIPSTLYHLNQLSNLYLAYNNLVGPLPKEVGNMKNLDSLLL  194 (408)
Q Consensus       115 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l  194 (408)
                      +++++|+++++.+. ..+..+..+++|++|++++|.+. ..+..+..+++|++|++++|.+. .++..+..+++|+.|++
T Consensus        81 ~~l~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~n~l~-~lp~~~~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L~L  157 (328)
T 4fcg_A           81 PGRVALELRSVPLP-QFPDQAFRLSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLRELSI  157 (328)
T ss_dssp             TTCCEEEEESSCCS-SCCSCGGGGTTCSEEEEESSCCC-CCCSCGGGGTTCSEEEEESCCCC-CCCGGGGGCTTCCEEEE
T ss_pred             cceeEEEccCCCch-hcChhhhhCCCCCEEECCCCCcc-chhHHHhccCCCCEEECCCCccc-cCcHHHhcCcCCCEEEC
Confidence            45555555555554 33444444555555555555554 34444555555555555555544 33444555555555555


Q ss_pred             cCcccccccCcccccccccCeEEccCCcCCCCCCcccCCCCCccEEEccCCcccccCCccccCCCCCCEEeCCCCccccc
Q 037302          195 NRNSLTGPIPSTIGYLNLGGKLDLSHNRLDSPIPPTIGNLTNLTSLDLSSNQLSGLLPREVGNLKYLDSLSLDGNNLIGS  274 (408)
Q Consensus       195 ~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~  274 (408)
                      ++|...+..+..+..      .         .....+..+++|++|++++|.+. ..+..+..+++|++|++++|.+.. 
T Consensus       158 ~~n~~~~~~p~~~~~------~---------~~~~~~~~l~~L~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~N~l~~-  220 (328)
T 4fcg_A          158 RACPELTELPEPLAS------T---------DASGEHQGLVNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLSA-  220 (328)
T ss_dssp             EEETTCCCCCSCSEE------E---------C-CCCEEESTTCCEEEEEEECCC-CCCGGGGGCTTCCEEEEESSCCCC-
T ss_pred             CCCCCccccChhHhh------c---------cchhhhccCCCCCEEECcCCCcC-cchHhhcCCCCCCEEEccCCCCCc-
Confidence            554433222222111      0         00112334666777777776666 445556666777777777776663 


Q ss_pred             CCccccCCCCCcEEeCCCCccccCCCcCCcCCCCCcEEEcCCCccCCcCCcccccCCCccEEEcCCccccccCCcCCCCC
Q 037302          275 IPPTIGYLTNLTSLNLGYNQLSSSIPPELMNCSQLQNLVLSHNTLSGIVPPEIGNLTHLRQLDLSHNFINGTIPSQLGYI  354 (408)
Q Consensus       275 ~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~  354 (408)
                      .+..+..+++|++|++++|.+.+..+..+..+++|++|++++|.+.+..+..+..+++|++|++++|.+.+.+|..+..+
T Consensus       221 l~~~l~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l~~L  300 (328)
T 4fcg_A          221 LGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQL  300 (328)
T ss_dssp             CCGGGGGCTTCCEEECTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCCGGGGGS
T ss_pred             CchhhccCCCCCEEECcCCcchhhhHHHhcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhccHHHhhc
Confidence            33446666777777777776666666666667777777777776666666666777777777777777776777777777


Q ss_pred             CCccEEeCCCCccC
Q 037302          355 PNISAVDLSKNNLS  368 (408)
Q Consensus       355 ~~L~~L~l~~~~l~  368 (408)
                      ++|+.+.+..+.+.
T Consensus       301 ~~L~~l~l~~~~~~  314 (328)
T 4fcg_A          301 PANCIILVPPHLQA  314 (328)
T ss_dssp             CTTCEEECCGGGSC
T ss_pred             cCceEEeCCHHHHH
Confidence            77777776665554

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=99.92  E-value=1.8e-29  Score=246.37  Aligned_cols=162  Identities=22%  Similarity=0.179  Sum_probs=86.5

Q ss_pred             ccccccCCCCCCcEEEcCCCcccccc---------------chhhccCCCCcEEeCCCCcCCCCCccccc-CCCCCcEEe
Q 037302           10 LSQLNFTCFPNLESIIIPYTLLSGRI---------------PSEIGALSKLEELALPYNSLTGTIPAEIG-SLRNLVELD   73 (408)
Q Consensus        10 ~~~~~~~~~~~L~~L~l~~~~~~~~~---------------~~~~~~~~~L~~L~l~~~~~~~~~~~~~~-~~~~L~~L~   73 (408)
                      .+...+.++|+|++|+++++......               ......+++|++|+++++.+++.....+. .+++|++|+
T Consensus        57 ~~~~~~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~  136 (594)
T 2p1m_B           57 SPATVIRRFPKVRSVELKGKPHFADFNLVPDGWGGYVYPWIEAMSSSYTWLEEIRLKRMVVTDDCLELIAKSFKNFKVLV  136 (594)
T ss_dssp             CHHHHHHHCTTCCEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCBCCHHHHHHHHHHCTTCCEEE
T ss_pred             CHHHHHhhCCCceEEeccCCCchhhcccccccccchhhHHHHHHHHhCCCCCeEEeeCcEEcHHHHHHHHHhCCCCcEEe
Confidence            34455667777777777766432111               11234567777777777766544334443 466777777


Q ss_pred             CCCc-eeccc-CcccccCCCCCceeecCCccccccCCCc----CCCCCCCCEEEcCCCe--eccc-CcccccCCCCCceE
Q 037302           74 LSNN-ILNGS-IPLEFGNLKDLDALRLRGNKLDGLIPSS----IGNLTNLTHLDLSLNQ--LSGR-LPQEVGNLKNLLSL  144 (408)
Q Consensus        74 l~~~-~~~~~-~~~~~~~l~~L~~L~l~~~~i~~~~~~~----l~~l~~L~~L~l~~~~--~~~~-~~~~~~~l~~L~~L  144 (408)
                      +++| .+.+. .+..+..+++|++|++++|.+....+..    ...+++|++|+++++.  +... .......+++|++|
T Consensus       137 L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L  216 (594)
T 2p1m_B          137 LSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISCLASEVSFSALERLVTRCPNLKSL  216 (594)
T ss_dssp             EESCEEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCTTCCCCCEEECTTCCSCCCHHHHHHHHHHCTTCCEE
T ss_pred             CCCcCCCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhhcCCcCcEEEecccCCcCCHHHHHHHHHhCCCCcEE
Confidence            7776 33321 3333346677777777777654433222    2255677777777664  2111 11112335677777


Q ss_pred             eccCCc-ccCcCchhhccCCCCCEEEcCC
Q 037302          145 FLDNNN-LTGPIPSTLYHLNQLSNLYLAY  172 (408)
Q Consensus       145 ~l~~~~-~~~~~~~~~~~~~~L~~L~l~~  172 (408)
                      +++++. +. ..+..+..+++|+.+.+..
T Consensus       217 ~L~~~~~~~-~l~~~~~~~~~L~~L~l~~  244 (594)
T 2p1m_B          217 KLNRAVPLE-KLATLLQRAPQLEELGTGG  244 (594)
T ss_dssp             ECCTTSCHH-HHHHHHHHCTTCSEEECSB
T ss_pred             ecCCCCcHH-HHHHHHhcCCcceEccccc
Confidence            776652 22 2333444555566655443

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=99.92  E-value=6.3e-24  Score=190.80  Aligned_cols=236  Identities=24%  Similarity=0.306  Sum_probs=180.8

Q ss_pred             CCCCCceeecCCccccccCCCcCCCCCCCCEEEcCCCeecccCcccccCCCCCceEeccCCcccCcCchhhccCCCCCEE
Q 037302           89 NLKDLDALRLRGNKLDGLIPSSIGNLTNLTHLDLSLNQLSGRLPQEVGNLKNLLSLFLDNNNLTGPIPSTLYHLNQLSNL  168 (408)
Q Consensus        89 ~l~~L~~L~l~~~~i~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L  168 (408)
                      ...+++.|+++++.+. ..|..+..+++|++|++++|.+. ..+..+..+++|++|++++|.+. .++..+..+++|++|
T Consensus        79 ~~~~l~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~n~l~-~lp~~~~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L  155 (328)
T 4fcg_A           79 TQPGRVALELRSVPLP-QFPDQAFRLSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLREL  155 (328)
T ss_dssp             TSTTCCEEEEESSCCS-SCCSCGGGGTTCSEEEEESSCCC-CCCSCGGGGTTCSEEEEESCCCC-CCCGGGGGCTTCCEE
T ss_pred             cccceeEEEccCCCch-hcChhhhhCCCCCEEECCCCCcc-chhHHHhccCCCCEEECCCCccc-cCcHHHhcCcCCCEE
Confidence            3578999999999998 45566888999999999999998 67888999999999999999998 667789999999999


Q ss_pred             EcCCCcCCCCCCccccCCCCCCEEEecCcccccccCcccccccccCeEEccCCcCCCCCCcccCCCCCccEEEccCCccc
Q 037302          169 YLAYNNLVGPLPKEVGNMKNLDSLLLNRNSLTGPIPSTIGYLNLGGKLDLSHNRLDSPIPPTIGNLTNLTSLDLSSNQLS  248 (408)
Q Consensus       169 ~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~  248 (408)
                      ++++|......+..+..      .         .....+..++.|++|++++|.+. ..+..+..+++|++|++++|.+.
T Consensus       156 ~L~~n~~~~~~p~~~~~------~---------~~~~~~~~l~~L~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~N~l~  219 (328)
T 4fcg_A          156 SIRACPELTELPEPLAS------T---------DASGEHQGLVNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLS  219 (328)
T ss_dssp             EEEEETTCCCCCSCSEE------E---------C-CCCEEESTTCCEEEEEEECCC-CCCGGGGGCTTCCEEEEESSCCC
T ss_pred             ECCCCCCccccChhHhh------c---------cchhhhccCCCCCEEECcCCCcC-cchHhhcCCCCCCEEEccCCCCC
Confidence            99998776555544332      0         11223455566666666666665 34555666777777777777766


Q ss_pred             ccCCccccCCCCCCEEeCCCCcccccCCccccCCCCCcEEeCCCCccccCCCcCCcCCCCCcEEEcCCCccCCcCCcccc
Q 037302          249 GLLPREVGNLKYLDSLSLDGNNLIGSIPPTIGYLTNLTSLNLGYNQLSSSIPPELMNCSQLQNLVLSHNTLSGIVPPEIG  328 (408)
Q Consensus       249 ~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~  328 (408)
                      . .+..+..+++|++|++++|.+....+..+..+++|++|++++|.+.+..+..+.++++|++|++++|++.+..+..+.
T Consensus       220 ~-l~~~l~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l~  298 (328)
T 4fcg_A          220 A-LGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIA  298 (328)
T ss_dssp             C-CCGGGGGCTTCCEEECTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCCGGGG
T ss_pred             c-CchhhccCCCCCEEECcCCcchhhhHHHhcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhccHHHh
Confidence            3 444566777888888888777766777777788888888888877777777778888888888888887778888888


Q ss_pred             cCCCccEEEcCCcccc
Q 037302          329 NLTHLRQLDLSHNFIN  344 (408)
Q Consensus       329 ~~~~L~~L~l~~~~~~  344 (408)
                      .+++++.+++..+.+.
T Consensus       299 ~L~~L~~l~l~~~~~~  314 (328)
T 4fcg_A          299 QLPANCIILVPPHLQA  314 (328)
T ss_dssp             GSCTTCEEECCGGGSC
T ss_pred             hccCceEEeCCHHHHH
Confidence            8888888888876554

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}

Probab=99.92  E-value=6.2e-26  Score=203.23  Aligned_cols=257  Identities=21%  Similarity=0.210  Sum_probs=117.6

Q ss_pred             CcEEeCCCceecccCcccccCCCCCceeecCCccccccCCCcCCCCCCCCEEEcCCCeecccCcccccCCCCCceEeccC
Q 037302           69 LVELDLSNNILNGSIPLEFGNLKDLDALRLRGNKLDGLIPSSIGNLTNLTHLDLSLNQLSGRLPQEVGNLKNLLSLFLDN  148 (408)
Q Consensus        69 L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~  148 (408)
                      ++..+++.+.+.......+..+++|++|++++|.+....+..+..+++|++|++++|.+....+  +..+++|++|++++
T Consensus        12 l~i~~ls~~~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~Ls~   89 (317)
T 3o53_A           12 YKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNN   89 (317)
T ss_dssp             EEEESCCTTTHHHHHHHHHTTGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE--ETTCTTCCEEECCS
T ss_pred             eeEeeccccchhhhHHHHhccCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh--hhhcCCCCEEECcC
Confidence            3344444444433333334455566666666666655555555566666666666665543221  45555555555555


Q ss_pred             CcccCcCchhhccCCCCCEEEcCCCcCCCCCCccccCCCCCCEEEecCcccccccCcccccccccCeEEccCCcCCCCCC
Q 037302          149 NNLTGPIPSTLYHLNQLSNLYLAYNNLVGPLPKEVGNMKNLDSLLLNRNSLTGPIPSTIGYLNLGGKLDLSHNRLDSPIP  228 (408)
Q Consensus       149 ~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~  228 (408)
                      |.++..     ...++|++|++++|.+..                        ...   ..++.|+.+++++|.+....+
T Consensus        90 n~l~~l-----~~~~~L~~L~l~~n~l~~------------------------~~~---~~~~~L~~L~l~~N~l~~~~~  137 (317)
T 3o53_A           90 NYVQEL-----LVGPSIETLHAANNNISR------------------------VSC---SRGQGKKNIYLANNKITMLRD  137 (317)
T ss_dssp             SEEEEE-----EECTTCCEEECCSSCCSE------------------------EEE---CCCSSCEEEECCSSCCCSGGG
T ss_pred             Cccccc-----cCCCCcCEEECCCCccCC------------------------cCc---cccCCCCEEECCCCCCCCccc
Confidence            554421     122444444444443321                        111   112334444444444433333


Q ss_pred             cccCCCCCccEEEccCCcccccCCccc-cCCCCCCEEeCCCCcccccCCccccCCCCCcEEeCCCCccccCCCcCCcCCC
Q 037302          229 PTIGNLTNLTSLDLSSNQLSGLLPREV-GNLKYLDSLSLDGNNLIGSIPPTIGYLTNLTSLNLGYNQLSSSIPPELMNCS  307 (408)
Q Consensus       229 ~~l~~~~~L~~L~l~~~~~~~~~~~~~-~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~  307 (408)
                      ..+..+++|++|++++|.+.+..+..+ ..+++|++|++++|.+....  ....+++|++|++++|.++... ..+..++
T Consensus       138 ~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~--~~~~l~~L~~L~Ls~N~l~~l~-~~~~~l~  214 (317)
T 3o53_A          138 LDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVK--GQVVFAKLKTLDLSSNKLAFMG-PEFQSAA  214 (317)
T ss_dssp             BCTGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEEE--CCCCCTTCCEEECCSSCCCEEC-GGGGGGT
T ss_pred             hhhhccCCCCEEECCCCCCCcccHHHHhhccCcCCEEECCCCcCcccc--cccccccCCEEECCCCcCCcch-hhhcccC
Confidence            334444455555555554443333222 23445555555555444321  1122445555555555554322 2244445


Q ss_pred             CCcEEEcCCCccCCcCCcccccCCCccEEEcCCcccc-ccCCcCCCCCCCccEEeCC
Q 037302          308 QLQNLVLSHNTLSGIVPPEIGNLTHLRQLDLSHNFIN-GTIPSQLGYIPNISAVDLS  363 (408)
Q Consensus       308 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~-~~~~~~~~~~~~L~~L~l~  363 (408)
                      +|++|++++|+++ ..+..+..+++|+.|++++|++. +..+..+..+++|+.+++.
T Consensus       215 ~L~~L~L~~N~l~-~l~~~~~~l~~L~~L~l~~N~~~~~~~~~~~~~~~~L~~l~l~  270 (317)
T 3o53_A          215 GVTWISLRNNKLV-LIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQ  270 (317)
T ss_dssp             TCSEEECTTSCCC-EECTTCCCCTTCCEEECTTCCCBHHHHHHHHHTCHHHHHHHHH
T ss_pred             cccEEECcCCccc-chhhHhhcCCCCCEEEccCCCccCcCHHHHHhccccceEEECC
Confidence            5555555555544 22333444455555555555544 3334444444455555444

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}

Probab=99.92  E-value=2e-25  Score=199.92  Aligned_cols=261  Identities=20%  Similarity=0.179  Sum_probs=196.4

Q ss_pred             EcCCCeecccCcccccCCCCCceEeccCCcccCcCchhhccCCCCCEEEcCCCcCCCCCCccccCCCCCCEEEecCcccc
Q 037302          121 DLSLNQLSGRLPQEVGNLKNLLSLFLDNNNLTGPIPSTLYHLNQLSNLYLAYNNLVGPLPKEVGNMKNLDSLLLNRNSLT  200 (408)
Q Consensus       121 ~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~  200 (408)
                      +++.+.+.......+..+++|++|++++|.++...+..+..+++|++|++++|.+....  .+..+++|+.|++++|.+.
T Consensus        16 ~ls~~~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~--~~~~l~~L~~L~Ls~n~l~   93 (317)
T 3o53_A           16 KVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETL--DLESLSTLRTLDLNNNYVQ   93 (317)
T ss_dssp             SCCTTTHHHHHHHHHTTGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEE--EETTCTTCCEEECCSSEEE
T ss_pred             eccccchhhhHHHHhccCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcch--hhhhcCCCCEEECcCCccc
Confidence            34444443333334445667777777777777655566777777777777777765332  2677888888888888776


Q ss_pred             cccCcccccccccCeEEccCCcCCCCCCcccCCCCCccEEEccCCcccccCCccccCCCCCCEEeCCCCcccccCCccc-
Q 037302          201 GPIPSTIGYLNLGGKLDLSHNRLDSPIPPTIGNLTNLTSLDLSSNQLSGLLPREVGNLKYLDSLSLDGNNLIGSIPPTI-  279 (408)
Q Consensus       201 ~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~-  279 (408)
                      +.     ...+.|+.+++++|.+....+.   .+++|++|++++|.+....+..+..+++|+.|++++|.+....+..+ 
T Consensus        94 ~l-----~~~~~L~~L~l~~n~l~~~~~~---~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~  165 (317)
T 3o53_A           94 EL-----LVGPSIETLHAANNNISRVSCS---RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELA  165 (317)
T ss_dssp             EE-----EECTTCCEEECCSSCCSEEEEC---CCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEEGGGGG
T ss_pred             cc-----cCCCCcCEEECCCCccCCcCcc---ccCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcccHHHHh
Confidence            32     2348899999999988764433   35789999999999987777788889999999999999886655544 


Q ss_pred             cCCCCCcEEeCCCCccccCCCcCCcCCCCCcEEEcCCCccCCcCCcccccCCCccEEEcCCccccccCCcCCCCCCCccE
Q 037302          280 GYLTNLTSLNLGYNQLSSSIPPELMNCSQLQNLVLSHNTLSGIVPPEIGNLTHLRQLDLSHNFINGTIPSQLGYIPNISA  359 (408)
Q Consensus       280 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~  359 (408)
                      ..+++|++|++++|.++...  ....+++|++|++++|++++. +..+..+++|++|++++|+++ .+|..+..+++|+.
T Consensus       166 ~~l~~L~~L~L~~N~l~~~~--~~~~l~~L~~L~Ls~N~l~~l-~~~~~~l~~L~~L~L~~N~l~-~l~~~~~~l~~L~~  241 (317)
T 3o53_A          166 ASSDTLEHLNLQYNFIYDVK--GQVVFAKLKTLDLSSNKLAFM-GPEFQSAAGVTWISLRNNKLV-LIEKALRFSQNLEH  241 (317)
T ss_dssp             GGTTTCCEEECTTSCCCEEE--CCCCCTTCCEEECCSSCCCEE-CGGGGGGTTCSEEECTTSCCC-EECTTCCCCTTCCE
T ss_pred             hccCcCCEEECCCCcCcccc--cccccccCCEEECCCCcCCcc-hhhhcccCcccEEECcCCccc-chhhHhhcCCCCCE
Confidence            47899999999999998652  233589999999999999854 445889999999999999999 56778899999999


Q ss_pred             EeCCCCccC-CcCCccccCC---CeEEccC-CccCCCCCCC
Q 037302          360 VDLSKNNLS-GVVPASVRII---PKLIVSE-NNLELENSTS  395 (408)
Q Consensus       360 L~l~~~~l~-~~~~~~~~~l---~~l~l~~-n~~~~~~~~~  395 (408)
                      |++++|++. +..|..+..+   +++++++ +.++|..|..
T Consensus       242 L~l~~N~~~~~~~~~~~~~~~~L~~l~l~~~~~l~~~~~~~  282 (317)
T 3o53_A          242 FDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTGQNEEE  282 (317)
T ss_dssp             EECTTCCCBHHHHHHHHHTCHHHHHHHHHHHHHHHSSSSCC
T ss_pred             EEccCCCccCcCHHHHHhccccceEEECCCchhccCCchhc
Confidence            999999998 5566655544   4777773 3466655544

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=99.91  E-value=4.3e-28  Score=236.58  Aligned_cols=377  Identities=15%  Similarity=0.118  Sum_probs=251.8

Q ss_pred             cccCCCCCCcEEEcCCCccccccchhhc-cCCCCcEEeCCCC-cCCCC-CcccccCCCCCcEEeCCCceecccCcccc--
Q 037302           13 LNFTCFPNLESIIIPYTLLSGRIPSEIG-ALSKLEELALPYN-SLTGT-IPAEIGSLRNLVELDLSNNILNGSIPLEF--   87 (408)
Q Consensus        13 ~~~~~~~~L~~L~l~~~~~~~~~~~~~~-~~~~L~~L~l~~~-~~~~~-~~~~~~~~~~L~~L~l~~~~~~~~~~~~~--   87 (408)
                      ..+.++++|++|+++++.+.+..+..+. .+++|++|++.+| .++.. .+..+..+++|++|++++|.+.+..+..+  
T Consensus        99 ~l~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~  178 (594)
T 2p1m_B           99 AMSSSYTWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSH  178 (594)
T ss_dssp             HHHHHCTTCCEEEEESCBCCHHHHHHHHHHCTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGG
T ss_pred             HHHHhCCCCCeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHH
Confidence            3356789999999999988766666664 7899999999988 44322 23334578999999999998775443333  


Q ss_pred             --cCCCCCceeecCCccccccCCC----cCCCCCCCCEEEcCCC-eecccCcccccCCCCCceEeccCCc-------ccC
Q 037302           88 --GNLKDLDALRLRGNKLDGLIPS----SIGNLTNLTHLDLSLN-QLSGRLPQEVGNLKNLLSLFLDNNN-------LTG  153 (408)
Q Consensus        88 --~~l~~L~~L~l~~~~i~~~~~~----~l~~l~~L~~L~l~~~-~~~~~~~~~~~~l~~L~~L~l~~~~-------~~~  153 (408)
                        ..+++|++|+++++. ..+...    .+..+++|++|++++| .+. ..+..+..+++|+++++..+.       +. 
T Consensus       179 ~~~~~~~L~~L~l~~~~-~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~-~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~-  255 (594)
T 2p1m_B          179 FPDTYTSLVSLNISCLA-SEVSFSALERLVTRCPNLKSLKLNRAVPLE-KLATLLQRAPQLEELGTGGYTAEVRPDVYS-  255 (594)
T ss_dssp             SCTTCCCCCEEECTTCC-SCCCHHHHHHHHHHCTTCCEEECCTTSCHH-HHHHHHHHCTTCSEEECSBCCCCCCHHHHH-
T ss_pred             HhhcCCcCcEEEecccC-CcCCHHHHHHHHHhCCCCcEEecCCCCcHH-HHHHHHhcCCcceEcccccccCccchhhHH-
Confidence              367799999999885 112111    1234689999999988 333 355666778999999876543       22 


Q ss_pred             cCchhhccCCCCCEEE-cCCCcCCCCCCccccCCCCCCEEEecCcccccc-cCcccccccccCeEEccCCcCCCC-CCcc
Q 037302          154 PIPSTLYHLNQLSNLY-LAYNNLVGPLPKEVGNMKNLDSLLLNRNSLTGP-IPSTIGYLNLGGKLDLSHNRLDSP-IPPT  230 (408)
Q Consensus       154 ~~~~~~~~~~~L~~L~-l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~-~~~~~~~~~~L~~l~l~~~~~~~~-~~~~  230 (408)
                      .....+.++++|+.+. +..... ...+..+..+++|++|++++|.+.+. ....+..+++|++|.++++ +... ....
T Consensus       256 ~l~~~l~~~~~L~~Ls~~~~~~~-~~l~~~~~~~~~L~~L~L~~~~l~~~~l~~~~~~~~~L~~L~l~~~-~~~~~l~~l  333 (594)
T 2p1m_B          256 GLSVALSGCKELRCLSGFWDAVP-AYLPAVYSVCSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDY-IEDAGLEVL  333 (594)
T ss_dssp             HHHHHHHTCTTCCEEECCBTCCG-GGGGGGHHHHTTCCEEECTTCCCCHHHHHHHHTTCTTCCEEEEEGG-GHHHHHHHH
T ss_pred             HHHHHHhcCCCcccccCCcccch-hhHHHHHHhhCCCCEEEccCCCCCHHHHHHHHhcCCCcCEEeCcCc-cCHHHHHHH
Confidence            1233667889999883 332211 12233344678999999999886532 2223567889999999877 3211 1112


Q ss_pred             cCCCCCccEEEccC---------CcccccCCcccc-CCCCCCEEeCCCCcccccCCccc-cCCCCCcEEeCC--C----C
Q 037302          231 IGNLTNLTSLDLSS---------NQLSGLLPREVG-NLKYLDSLSLDGNNLIGSIPPTI-GYLTNLTSLNLG--Y----N  293 (408)
Q Consensus       231 l~~~~~L~~L~l~~---------~~~~~~~~~~~~-~~~~L~~L~l~~~~~~~~~~~~~-~~~~~L~~L~l~--~----~  293 (408)
                      ...+++|++|++.+         +.+++.....+. .+++|+.|.+..+.+.+.....+ ..+++|++|+++  +    +
T Consensus       334 ~~~~~~L~~L~L~~~~~~g~~~~~~l~~~~l~~l~~~~~~L~~L~~~~~~l~~~~~~~l~~~~~~L~~L~L~~~~~~~~~  413 (594)
T 2p1m_B          334 ASTCKDLRELRVFPSEPFVMEPNVALTEQGLVSVSMGCPKLESVLYFCRQMTNAALITIARNRPNMTRFRLCIIEPKAPD  413 (594)
T ss_dssp             HHHCTTCCEEEEECSCTTCSSCSSCCCHHHHHHHHHHCTTCCEEEEEESCCCHHHHHHHHHHCTTCCEEEEEESSTTCCC
T ss_pred             HHhCCCCCEEEEecCcccccccCCCCCHHHHHHHHHhchhHHHHHHhcCCcCHHHHHHHHhhCCCcceeEeecccCCCcc
Confidence            23478899999843         233332222233 47899999887776654433333 358999999998  3    3


Q ss_pred             ccccCC-----CcCCcCCCCCcEEEcCCCccCCcCCccccc-CCCccEEEcCCccccccCCcCC-CCCCCccEEeCCCCc
Q 037302          294 QLSSSI-----PPELMNCSQLQNLVLSHNTLSGIVPPEIGN-LTHLRQLDLSHNFINGTIPSQL-GYIPNISAVDLSKNN  366 (408)
Q Consensus       294 ~~~~~~-----~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~-~~~L~~L~l~~~~~~~~~~~~~-~~~~~L~~L~l~~~~  366 (408)
                      .++...     ...+..+++|+.|++++ .+++.....+.. +++|+.|++++|.+++..+..+ ..+++|+.|++++|+
T Consensus       414 ~l~~~~~~~~~~~l~~~~~~L~~L~L~~-~l~~~~~~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~  492 (594)
T 2p1m_B          414 YLTLEPLDIGFGAIVEHCKDLRRLSLSG-LLTDKVFEYIGTYAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCP  492 (594)
T ss_dssp             TTTCCCTHHHHHHHHHHCTTCCEEECCS-SCCHHHHHHHHHHCTTCCEEEEESCCSSHHHHHHHHHHCTTCCEEEEESCS
T ss_pred             cccCCchhhHHHHHHhhCCCccEEeecC-cccHHHHHHHHHhchhccEeeccCCCCcHHHHHHHHhcCCCcCEEECcCCC
Confidence            444211     11255689999999987 555443344444 7899999999999886655544 568999999999999


Q ss_pred             cCCcCC----ccccCCCeEEccCCccCCCCCCC
Q 037302          367 LSGVVP----ASVRIIPKLIVSENNLELENSTS  395 (408)
Q Consensus       367 l~~~~~----~~~~~l~~l~l~~n~~~~~~~~~  395 (408)
                      +.+..+    ..+.++++|++++|+++......
T Consensus       493 ~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~  525 (594)
T 2p1m_B          493 FGDKALLANASKLETMRSLWMSSCSVSFGACKL  525 (594)
T ss_dssp             CCHHHHHHTGGGGGGSSEEEEESSCCBHHHHHH
T ss_pred             CcHHHHHHHHHhCCCCCEEeeeCCCCCHHHHHH
Confidence            964433    23567889999999986544333

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}

Probab=99.91  E-value=8.9e-23  Score=197.03  Aligned_cols=265  Identities=28%  Similarity=0.285  Sum_probs=152.2

Q ss_pred             CCcEEeCCCCcCCCCCcccccCCCCCcEEeCCCceecccCcccccCCCCCceeecCCccccccCCCcCCCCCCCCEEEcC
Q 037302           44 KLEELALPYNSLTGTIPAEIGSLRNLVELDLSNNILNGSIPLEFGNLKDLDALRLRGNKLDGLIPSSIGNLTNLTHLDLS  123 (408)
Q Consensus        44 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~l~~l~~L~~L~l~  123 (408)
                      +++.|+++++.++ .+|..+.  ++|+.|++++|.+. .+|.   .+++|++|++++|.++.++.    .+++|++|+++
T Consensus        41 ~l~~L~ls~n~L~-~lp~~l~--~~L~~L~L~~N~l~-~lp~---~l~~L~~L~Ls~N~l~~lp~----~l~~L~~L~Ls  109 (622)
T 3g06_A           41 GNAVLNVGESGLT-TLPDCLP--AHITTLVIPDNNLT-SLPA---LPPELRTLEVSGNQLTSLPV----LPPGLLELSIF  109 (622)
T ss_dssp             CCCEEECCSSCCS-CCCSCCC--TTCSEEEECSCCCS-CCCC---CCTTCCEEEECSCCCSCCCC----CCTTCCEEEEC
T ss_pred             CCcEEEecCCCcC-ccChhhC--CCCcEEEecCCCCC-CCCC---cCCCCCEEEcCCCcCCcCCC----CCCCCCEEECc
Confidence            5777777777776 4444443  67777777777666 3333   45677777777776654332    45666667666


Q ss_pred             CCeecccCcccccCCCCCceEeccCCcccCcCchhhccCCCCCEEEcCCCcCCCCCCccccCCCCCCEEEecCccccccc
Q 037302          124 LNQLSGRLPQEVGNLKNLLSLFLDNNNLTGPIPSTLYHLNQLSNLYLAYNNLVGPLPKEVGNMKNLDSLLLNRNSLTGPI  203 (408)
Q Consensus       124 ~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~  203 (408)
                      +|.+... +.   .+++|+.|++++|.++.. +.   .+++|++|++++|.+... +   ..+                 
T Consensus       110 ~N~l~~l-~~---~l~~L~~L~L~~N~l~~l-p~---~l~~L~~L~Ls~N~l~~l-~---~~~-----------------  160 (622)
T 3g06_A          110 SNPLTHL-PA---LPSGLCKLWIFGNQLTSL-PV---LPPGLQELSVSDNQLASL-P---ALP-----------------  160 (622)
T ss_dssp             SCCCCCC-CC---CCTTCCEEECCSSCCSCC-CC---CCTTCCEEECCSSCCSCC-C---CCC-----------------
T ss_pred             CCcCCCC-CC---CCCCcCEEECCCCCCCcC-CC---CCCCCCEEECcCCcCCCc-C---Ccc-----------------
Confidence            6666532 22   345566666666655432 21   124555555555544321 1   122                 


Q ss_pred             CcccccccccCeEEccCCcCCCCCCcccCCCCCccEEEccCCcccccCCccccCCCCCCEEeCCCCcccccCCccccCCC
Q 037302          204 PSTIGYLNLGGKLDLSHNRLDSPIPPTIGNLTNLTSLDLSSNQLSGLLPREVGNLKYLDSLSLDGNNLIGSIPPTIGYLT  283 (408)
Q Consensus       204 ~~~~~~~~~L~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~  283 (408)
                             +.|+.|.+++|.+....    ..+++|+.|++++|.+... +.   ..++|+.|.+.+|.+.... .   .++
T Consensus       161 -------~~L~~L~L~~N~l~~l~----~~~~~L~~L~Ls~N~l~~l-~~---~~~~L~~L~L~~N~l~~l~-~---~~~  221 (622)
T 3g06_A          161 -------SELCKLWAYNNQLTSLP----MLPSGLQELSVSDNQLASL-PT---LPSELYKLWAYNNRLTSLP-A---LPS  221 (622)
T ss_dssp             -------TTCCEEECCSSCCSCCC----CCCTTCCEEECCSSCCSCC-CC---CCTTCCEEECCSSCCSSCC-C---CCT
T ss_pred             -------CCCCEEECCCCCCCCCc----ccCCCCcEEECCCCCCCCC-CC---ccchhhEEECcCCcccccC-C---CCC
Confidence                   34445555554444321    2345566666666655532 11   2356666666666655322 1   236


Q ss_pred             CCcEEeCCCCccccCCCcCCcCCCCCcEEEcCCCccCCcCCcccccCCCccEEEcCCccccccCCcCCCCCCCccEEeCC
Q 037302          284 NLTSLNLGYNQLSSSIPPELMNCSQLQNLVLSHNTLSGIVPPEIGNLTHLRQLDLSHNFINGTIPSQLGYIPNISAVDLS  363 (408)
Q Consensus       284 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~  363 (408)
                      +|++|++++|.++. .+   ..+++|+.|++++|.++.+ +.   .+++|+.|++++|.++ .+|..+..+++|+.|+++
T Consensus       222 ~L~~L~Ls~N~L~~-lp---~~l~~L~~L~Ls~N~L~~l-p~---~~~~L~~L~Ls~N~L~-~lp~~l~~l~~L~~L~L~  292 (622)
T 3g06_A          222 GLKELIVSGNRLTS-LP---VLPSELKELMVSGNRLTSL-PM---LPSGLLSLSVYRNQLT-RLPESLIHLSSETTVNLE  292 (622)
T ss_dssp             TCCEEECCSSCCSC-CC---CCCTTCCEEECCSSCCSCC-CC---CCTTCCEEECCSSCCC-SCCGGGGGSCTTCEEECC
T ss_pred             CCCEEEccCCccCc-CC---CCCCcCcEEECCCCCCCcC-Cc---ccccCcEEeCCCCCCC-cCCHHHhhccccCEEEec
Confidence            67777777776663 22   3446777777777776633 22   4567777777777777 556667777777777777


Q ss_pred             CCccCCcCCcccc
Q 037302          364 KNNLSGVVPASVR  376 (408)
Q Consensus       364 ~~~l~~~~~~~~~  376 (408)
                      +|++.+..|..+.
T Consensus       293 ~N~l~~~~~~~l~  305 (622)
T 3g06_A          293 GNPLSERTLQALR  305 (622)
T ss_dssp             SCCCCHHHHHHHH
T ss_pred             CCCCCCcCHHHHH
Confidence            7777766665544

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=99.91  E-value=8.9e-25  Score=195.27  Aligned_cols=203  Identities=24%  Similarity=0.233  Sum_probs=137.8

Q ss_pred             cCCCCCEEEcCCCcCCCCCCccc--cCCCCCCEEEecCcccccccCcccccc-----cccCeEEccCCcCCCCCCcccCC
Q 037302          161 HLNQLSNLYLAYNNLVGPLPKEV--GNMKNLDSLLLNRNSLTGPIPSTIGYL-----NLGGKLDLSHNRLDSPIPPTIGN  233 (408)
Q Consensus       161 ~~~~L~~L~l~~~~~~~~~~~~~--~~~~~L~~L~l~~~~~~~~~~~~~~~~-----~~L~~l~l~~~~~~~~~~~~l~~  233 (408)
                      .+++|++|++++|.+....+..+  ..+++|++|++++|.+.+. +..+..+     +.|++|++++|.+....+..+..
T Consensus        93 ~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~  171 (312)
T 1wwl_A           93 GISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRV  171 (312)
T ss_dssp             TTSCCCEEEEEEEBCBSCCCCCSSSCCSCCCSEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCC
T ss_pred             CcCCccEEEccCCcccchhHHHHHHhcCCCccEEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhcc
Confidence            46677777777777665555544  6677777777777777654 4555554     77888888888777766677778


Q ss_pred             CCCccEEEccCCccccc--CCcc--ccCCCCCCEEeCCCCccccc---CCccccCCCCCcEEeCCCCccccCCC-cCCcC
Q 037302          234 LTNLTSLDLSSNQLSGL--LPRE--VGNLKYLDSLSLDGNNLIGS---IPPTIGYLTNLTSLNLGYNQLSSSIP-PELMN  305 (408)
Q Consensus       234 ~~~L~~L~l~~~~~~~~--~~~~--~~~~~~L~~L~l~~~~~~~~---~~~~~~~~~~L~~L~l~~~~~~~~~~-~~~~~  305 (408)
                      +++|++|++++|.+.+.  .+..  +..+++|++|++++|.+...   ....+..+++|++|++++|.+++..+ ..+..
T Consensus       172 l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~  251 (312)
T 1wwl_A          172 FPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDW  251 (312)
T ss_dssp             CSSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCC
T ss_pred             CCCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhhh
Confidence            88888888888875432  1112  26677888888888877622   22334566788888888887776543 34555


Q ss_pred             CCCCcEEEcCCCccCCcCCcccccCCCccEEEcCCccccccCCcCCCCCCCccEEeCCCCccCC
Q 037302          306 CSQLQNLVLSHNTLSGIVPPEIGNLTHLRQLDLSHNFINGTIPSQLGYIPNISAVDLSKNNLSG  369 (408)
Q Consensus       306 ~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~  369 (408)
                      +++|++|++++|.++ ..+..+.  ++|++|++++|++++. |. +..+++|+.|++++|++++
T Consensus       252 l~~L~~L~Ls~N~l~-~ip~~~~--~~L~~L~Ls~N~l~~~-p~-~~~l~~L~~L~L~~N~l~~  310 (312)
T 1wwl_A          252 PSQLNSLNLSFTGLK-QVPKGLP--AKLSVLDLSYNRLDRN-PS-PDELPQVGNLSLKGNPFLD  310 (312)
T ss_dssp             CTTCCEEECTTSCCS-SCCSSCC--SEEEEEECCSSCCCSC-CC-TTTSCEEEEEECTTCTTTC
T ss_pred             cCCCCEEECCCCccC-hhhhhcc--CCceEEECCCCCCCCC-hh-HhhCCCCCEEeccCCCCCC
Confidence            677888888888776 3444443  6777888888877754 54 6677777777777777764

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=99.91  E-value=3.1e-23  Score=181.47  Aligned_cols=190  Identities=29%  Similarity=0.258  Sum_probs=138.5

Q ss_pred             cccccccCeEEccCCcCCCCCCcccCCCCCccEEEccCCcccccCCccccCCCCCCEEeCCCCcccccCCccccCCCCCc
Q 037302          207 IGYLNLGGKLDLSHNRLDSPIPPTIGNLTNLTSLDLSSNQLSGLLPREVGNLKYLDSLSLDGNNLIGSIPPTIGYLTNLT  286 (408)
Q Consensus       207 ~~~~~~L~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~  286 (408)
                      +..++.|++|+++++.+...  ..+..+++|++|++++|.+....+..+..+++|++|++++|.+....+..+..+++|+
T Consensus        59 l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~  136 (272)
T 3rfs_A           59 IQYLPNVRYLALGGNKLHDI--SALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLT  136 (272)
T ss_dssp             GGGCTTCCEEECTTSCCCCC--GGGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCC
T ss_pred             cccCCCCcEEECCCCCCCCc--hhhcCCCCCCEEECCCCccCccChhHhcCCcCCCEEECCCCcCCccCHHHhccCCCCC
Confidence            33444555555555544432  2455666777777777776655555566777777777777777655555677778888


Q ss_pred             EEeCCCCccccCCCcCCcCCCCCcEEEcCCCccCCcCCcccccCCCccEEEcCCccccccCCcCCCCCCCccEEeCCCCc
Q 037302          287 SLNLGYNQLSSSIPPELMNCSQLQNLVLSHNTLSGIVPPEIGNLTHLRQLDLSHNFINGTIPSQLGYIPNISAVDLSKNN  366 (408)
Q Consensus       287 ~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~  366 (408)
                      +|++++|.++...+..+..+++|++|++++|++++..+..+..+++|++|++++|++++..+..+..+++|+.|++++|+
T Consensus       137 ~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~  216 (272)
T 3rfs_A          137 YLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNP  216 (272)
T ss_dssp             EEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSC
T ss_pred             EEECCCCccCccCHHHhccCccCCEEECCCCCcCccCHHHhcCCccCCEEECCCCcCCccCHHHHhCCcCCCEEEccCCC
Confidence            88888888876666667778888888888888877666667788888888888888887777777888888888888888


Q ss_pred             cCCcCCccccCCCeEEccCCccCCCCCCCcCCCCCC
Q 037302          367 LSGVVPASVRIIPKLIVSENNLELENSTSSENAPPP  402 (408)
Q Consensus       367 l~~~~~~~~~~l~~l~l~~n~~~~~~~~~~~~~~~~  402 (408)
                      +.+..|    +++.+++..|.++|.+|.++.++++.
T Consensus       217 ~~~~~~----~l~~l~~~~n~~~g~ip~~~~~~~~~  248 (272)
T 3rfs_A          217 WDCTCP----GIRYLSEWINKHSGVVRNSAGSVAPD  248 (272)
T ss_dssp             BCCCTT----TTHHHHHHHHHTGGGBBCTTSCBCGG
T ss_pred             ccccCc----HHHHHHHHHHhCCCcccCcccccCCC
Confidence            876543    56788888888888888888877653

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}

Probab=99.90  E-value=9.9e-22  Score=189.75  Aligned_cols=263  Identities=27%  Similarity=0.285  Sum_probs=174.0

Q ss_pred             CCCcEEEcCCCccccccchhhccCCCCcEEeCCCCcCCCCCcccccCCCCCcEEeCCCceecccCcccccCCCCCceeec
Q 037302           19 PNLESIIIPYTLLSGRIPSEIGALSKLEELALPYNSLTGTIPAEIGSLRNLVELDLSNNILNGSIPLEFGNLKDLDALRL   98 (408)
Q Consensus        19 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l   98 (408)
                      .++++|+++++.+. .+|..+.  ++|++|++++|.++. ++.   .+++|++|++++|.+. .+|.   .+++|++|++
T Consensus        40 ~~l~~L~ls~n~L~-~lp~~l~--~~L~~L~L~~N~l~~-lp~---~l~~L~~L~Ls~N~l~-~lp~---~l~~L~~L~L  108 (622)
T 3g06_A           40 NGNAVLNVGESGLT-TLPDCLP--AHITTLVIPDNNLTS-LPA---LPPELRTLEVSGNQLT-SLPV---LPPGLLELSI  108 (622)
T ss_dssp             HCCCEEECCSSCCS-CCCSCCC--TTCSEEEECSCCCSC-CCC---CCTTCCEEEECSCCCS-CCCC---CCTTCCEEEE
T ss_pred             CCCcEEEecCCCcC-ccChhhC--CCCcEEEecCCCCCC-CCC---cCCCCCEEEcCCCcCC-cCCC---CCCCCCEEEC
Confidence            46999999999988 5665554  799999999999884 333   6789999999999987 4454   6799999999


Q ss_pred             CCccccccCCCcCCCCCCCCEEEcCCCeecccCcccccCCCCCceEeccCCcccCcCchhhccCCCCCEEEcCCCcCCCC
Q 037302           99 RGNKLDGLIPSSIGNLTNLTHLDLSLNQLSGRLPQEVGNLKNLLSLFLDNNNLTGPIPSTLYHLNQLSNLYLAYNNLVGP  178 (408)
Q Consensus        99 ~~~~i~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~  178 (408)
                      ++|.++.+..    .+++|+.|++++|.+.. .+.   .+++|++|++++|.++.. +.   ..++|+.|++++|.+...
T Consensus       109 s~N~l~~l~~----~l~~L~~L~L~~N~l~~-lp~---~l~~L~~L~Ls~N~l~~l-~~---~~~~L~~L~L~~N~l~~l  176 (622)
T 3g06_A          109 FSNPLTHLPA----LPSGLCKLWIFGNQLTS-LPV---LPPGLQELSVSDNQLASL-PA---LPSELCKLWAYNNQLTSL  176 (622)
T ss_dssp             CSCCCCCCCC----CCTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSCC-CC---CCTTCCEEECCSSCCSCC
T ss_pred             cCCcCCCCCC----CCCCcCEEECCCCCCCc-CCC---CCCCCCEEECcCCcCCCc-CC---ccCCCCEEECCCCCCCCC
Confidence            9999886543    57899999999999874 333   358999999999988743 22   357899999999988742


Q ss_pred             CCccccCCCCCCEEEecCcccccccCcccccccccCeEEccCCcCCCCCCcccCCCCCccEEEccCCcccccCCccccCC
Q 037302          179 LPKEVGNMKNLDSLLLNRNSLTGPIPSTIGYLNLGGKLDLSHNRLDSPIPPTIGNLTNLTSLDLSSNQLSGLLPREVGNL  258 (408)
Q Consensus       179 ~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~  258 (408)
                       +   ..+++|+.|++++|.+.+. +.   .++.|+.|.+++|.+.... .   .+++|+.|++++|.+.          
T Consensus       177 -~---~~~~~L~~L~Ls~N~l~~l-~~---~~~~L~~L~L~~N~l~~l~-~---~~~~L~~L~Ls~N~L~----------  234 (622)
T 3g06_A          177 -P---MLPSGLQELSVSDNQLASL-PT---LPSELYKLWAYNNRLTSLP-A---LPSGLKELIVSGNRLT----------  234 (622)
T ss_dssp             -C---CCCTTCCEEECCSSCCSCC-CC---CCTTCCEEECCSSCCSSCC-C---CCTTCCEEECCSSCCS----------
T ss_pred             -c---ccCCCCcEEECCCCCCCCC-CC---ccchhhEEECcCCcccccC-C---CCCCCCEEEccCCccC----------
Confidence             2   4567788888888776532 11   2345555555555544321 1   1244455555544443          


Q ss_pred             CCCCEEeCCCCcccccCCccccCCCCCcEEeCCCCccccCCCcCCcCCCCCcEEEcCCCccCCcCCcccccCCCccEEEc
Q 037302          259 KYLDSLSLDGNNLIGSIPPTIGYLTNLTSLNLGYNQLSSSIPPELMNCSQLQNLVLSHNTLSGIVPPEIGNLTHLRQLDL  338 (408)
Q Consensus       259 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l  338 (408)
                                    .. +   ..+++|++|++++|.++. ++.   .+++|+.|++++|.++ .++..+..+++|+.|++
T Consensus       235 --------------~l-p---~~l~~L~~L~Ls~N~L~~-lp~---~~~~L~~L~Ls~N~L~-~lp~~l~~l~~L~~L~L  291 (622)
T 3g06_A          235 --------------SL-P---VLPSELKELMVSGNRLTS-LPM---LPSGLLSLSVYRNQLT-RLPESLIHLSSETTVNL  291 (622)
T ss_dssp             --------------CC-C---CCCTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCC-SCCGGGGGSCTTCEEEC
T ss_pred             --------------cC-C---CCCCcCcEEECCCCCCCc-CCc---ccccCcEEeCCCCCCC-cCCHHHhhccccCEEEe
Confidence                          21 1   233455555555555552 222   3455555555555555 33445555555666666


Q ss_pred             CCccccccCCc
Q 037302          339 SHNFINGTIPS  349 (408)
Q Consensus       339 ~~~~~~~~~~~  349 (408)
                      ++|++++..|.
T Consensus       292 ~~N~l~~~~~~  302 (622)
T 3g06_A          292 EGNPLSERTLQ  302 (622)
T ss_dssp             CSCCCCHHHHH
T ss_pred             cCCCCCCcCHH
Confidence            66655544443

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=99.90  E-value=1.4e-24  Score=193.94  Aligned_cols=248  Identities=21%  Similarity=0.234  Sum_probs=190.4

Q ss_pred             ccCCCCCceEeccCCcccCcCchhhccCCCCCEEEcCCCcCCC-CCCcccc-------CCCCCCEEEecCcccccccCcc
Q 037302          135 VGNLKNLLSLFLDNNNLTGPIPSTLYHLNQLSNLYLAYNNLVG-PLPKEVG-------NMKNLDSLLLNRNSLTGPIPST  206 (408)
Q Consensus       135 ~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~-~~~~~~~-------~~~~L~~L~l~~~~~~~~~~~~  206 (408)
                      +...++|+.++++++.+  ..+..+...  ++.|+++++.+.. ..+..+.       .+++|++|++++|.+.+..+..
T Consensus        39 ~~~~~~L~~l~l~~n~l--~~p~~~~~~--L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~  114 (312)
T 1wwl_A           39 YGGGRSLEYLLKRVDTE--ADLGQFTDI--IKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPP  114 (312)
T ss_dssp             EEEEEECTTHHHHCCTT--CCCHHHHHH--HHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCC
T ss_pred             EccCCCceeEeeccccc--ccHHHHHHH--HhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHH
Confidence            34456677777777776  344444433  6777777776632 2333333       6899999999999998766665


Q ss_pred             c--ccccccCeEEccCCcCCCCCCcccCCC-----CCccEEEccCCcccccCCccccCCCCCCEEeCCCCccccc--CCc
Q 037302          207 I--GYLNLGGKLDLSHNRLDSPIPPTIGNL-----TNLTSLDLSSNQLSGLLPREVGNLKYLDSLSLDGNNLIGS--IPP  277 (408)
Q Consensus       207 ~--~~~~~L~~l~l~~~~~~~~~~~~l~~~-----~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~--~~~  277 (408)
                      +  ..++.|++|++++|.+... +..+..+     ++|++|++++|.+....+..++.+++|++|++++|.+...  .+.
T Consensus       115 ~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~  193 (312)
T 1wwl_A          115 LLEATGPDLNILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLIS  193 (312)
T ss_dssp             SSSCCSCCCSEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHHHHH
T ss_pred             HHHhcCCCccEEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchHHHH
Confidence            4  8899999999999999876 6666555     8999999999999877778899999999999999986533  122


Q ss_pred             c--ccCCCCCcEEeCCCCcccc---CCCcCCcCCCCCcEEEcCCCccCCcCC-cccccCCCccEEEcCCccccccCCcCC
Q 037302          278 T--IGYLTNLTSLNLGYNQLSS---SIPPELMNCSQLQNLVLSHNTLSGIVP-PEIGNLTHLRQLDLSHNFINGTIPSQL  351 (408)
Q Consensus       278 ~--~~~~~~L~~L~l~~~~~~~---~~~~~~~~~~~L~~L~l~~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~~~~~~~  351 (408)
                      .  +..+++|++|++++|.++.   .....+..+++|++|++++|++.+..+ ..+..+++|++|++++|.++ .+|..+
T Consensus       194 ~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~-~ip~~~  272 (312)
T 1wwl_A          194 ALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLK-QVPKGL  272 (312)
T ss_dssp             HSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCCCTTCCEEECTTSCCS-SCCSSC
T ss_pred             HHHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhhhcCCCCEEECCCCccC-hhhhhc
Confidence            2  3788999999999999883   222334578999999999999987653 45667899999999999999 667666


Q ss_pred             CCCCCccEEeCCCCccCCcCCc--cccCCCeEEccCCccCCC
Q 037302          352 GYIPNISAVDLSKNNLSGVVPA--SVRIIPKLIVSENNLELE  391 (408)
Q Consensus       352 ~~~~~L~~L~l~~~~l~~~~~~--~~~~l~~l~l~~n~~~~~  391 (408)
                      .  ++|+.|++++|++++. |.  .+.++++|++++|++++.
T Consensus       273 ~--~~L~~L~Ls~N~l~~~-p~~~~l~~L~~L~L~~N~l~~~  311 (312)
T 1wwl_A          273 P--AKLSVLDLSYNRLDRN-PSPDELPQVGNLSLKGNPFLDS  311 (312)
T ss_dssp             C--SEEEEEECCSSCCCSC-CCTTTSCEEEEEECTTCTTTCC
T ss_pred             c--CCceEEECCCCCCCCC-hhHhhCCCCCEEeccCCCCCCC
Confidence            5  8999999999999987 43  233556999999999764

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.89  E-value=4.1e-23  Score=195.35  Aligned_cols=232  Identities=21%  Similarity=0.195  Sum_probs=144.7

Q ss_pred             CCCceEeccCCcccCcCchhhccCCCCCEEEcCCCcCCCCCCccccCCCCCCEEEecCcccccccCcccccccccCeEEc
Q 037302          139 KNLLSLFLDNNNLTGPIPSTLYHLNQLSNLYLAYNNLVGPLPKEVGNMKNLDSLLLNRNSLTGPIPSTIGYLNLGGKLDL  218 (408)
Q Consensus       139 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l  218 (408)
                      ++|++|++++|.+....+..+..+++|+.|++++|.+....+  +..+++|+.|++++|.+.+..     ..+.|+.|++
T Consensus        34 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~l~-----~~~~L~~L~L  106 (487)
T 3oja_A           34 WNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQELL-----VGPSIETLHA  106 (487)
T ss_dssp             GGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE--CTTCTTCCEEECCSSEEEEEE-----ECTTCCEEEC
T ss_pred             CCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc--cccCCCCCEEEecCCcCCCCC-----CCCCcCEEEC
Confidence            355666666555554444555555666666666555543222  555666666666666554321     2256666666


Q ss_pred             cCCcCCCCCCcccCCCCCccEEEccCCcccccCCccccCCCCCCEEeCCCCcccccCCcccc-CCCCCcEEeCCCCcccc
Q 037302          219 SHNRLDSPIPPTIGNLTNLTSLDLSSNQLSGLLPREVGNLKYLDSLSLDGNNLIGSIPPTIG-YLTNLTSLNLGYNQLSS  297 (408)
Q Consensus       219 ~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~-~~~~L~~L~l~~~~~~~  297 (408)
                      ++|.+....+.   .+++|+.|++++|.+.+..+..++.+++|+.|++++|.+....+..+. .+++|++|++++|.+++
T Consensus       107 ~~N~l~~~~~~---~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l~~  183 (487)
T 3oja_A          107 ANNNISRVSCS---RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYD  183 (487)
T ss_dssp             CSSCCCCEEEC---CCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCE
T ss_pred             cCCcCCCCCcc---ccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCcccc
Confidence            66666543332   346677777777777666566666777777777777777655444443 56777777777777775


Q ss_pred             CCCcCCcCCCCCcEEEcCCCccCCcCCcccccCCCccEEEcCCccccccCCcCCCCCCCccEEeCCCCccC-CcCCcccc
Q 037302          298 SIPPELMNCSQLQNLVLSHNTLSGIVPPEIGNLTHLRQLDLSHNFINGTIPSQLGYIPNISAVDLSKNNLS-GVVPASVR  376 (408)
Q Consensus       298 ~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~-~~~~~~~~  376 (408)
                      ..  ....+++|+.|++++|.+++. +..+..+++|+.|++++|.++ .+|..+..+++|+.|++++|++. +..|..+.
T Consensus       184 ~~--~~~~l~~L~~L~Ls~N~l~~~-~~~~~~l~~L~~L~Ls~N~l~-~lp~~l~~l~~L~~L~l~~N~l~c~~~~~~~~  259 (487)
T 3oja_A          184 VK--GQVVFAKLKTLDLSSNKLAFM-GPEFQSAAGVTWISLRNNKLV-LIEKALRFSQNLEHFDLRGNGFHCGTLRDFFS  259 (487)
T ss_dssp             EE--CCCCCTTCCEEECCSSCCCEE-CGGGGGGTTCSEEECTTSCCC-EECTTCCCCTTCCEEECTTCCBCHHHHHHHHT
T ss_pred             cc--ccccCCCCCEEECCCCCCCCC-CHhHcCCCCccEEEecCCcCc-ccchhhccCCCCCEEEcCCCCCcCcchHHHHH
Confidence            42  233467788888888877744 334677778888888888777 35666777778888888888776 44444444


Q ss_pred             CCC---eEEcc
Q 037302          377 IIP---KLIVS  384 (408)
Q Consensus       377 ~l~---~l~l~  384 (408)
                      .+.   .+++.
T Consensus       260 ~l~~L~~l~~~  270 (487)
T 3oja_A          260 KNQRVQTVAKQ  270 (487)
T ss_dssp             TCHHHHHHHHH
T ss_pred             hCCCCcEEecc
Confidence            433   44443

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=99.89  E-value=3.4e-22  Score=175.45  Aligned_cols=207  Identities=23%  Similarity=0.226  Sum_probs=118.6

Q ss_pred             CCCEEEcCCCcCCCCCCccccCCCCCCEEEecCcccccccCcccccccccCeEEccCCcCCCCCCcccCCCCCccEEEcc
Q 037302          164 QLSNLYLAYNNLVGPLPKEVGNMKNLDSLLLNRNSLTGPIPSTIGYLNLGGKLDLSHNRLDSPIPPTIGNLTNLTSLDLS  243 (408)
Q Consensus       164 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~  243 (408)
                      ++++|++++|.+....+..+..+++|++|++++|.+.+..+..+..+++|++|+++++.+....+..+..+++|++|+++
T Consensus        29 ~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~  108 (276)
T 2z62_A           29 STKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAV  108 (276)
T ss_dssp             TCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECT
T ss_pred             CccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhcCCccccEEECC
Confidence            34444444444433333334444445555555444443333344445555555555555544444455555666666666


Q ss_pred             CCcccccCCccccCCCCCCEEeCCCCccccc-CCccccCCCCCcEEeCCCCccccCCCcCCcCCCCCc----EEEcCCCc
Q 037302          244 SNQLSGLLPREVGNLKYLDSLSLDGNNLIGS-IPPTIGYLTNLTSLNLGYNQLSSSIPPELMNCSQLQ----NLVLSHNT  318 (408)
Q Consensus       244 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~-~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~----~L~l~~~~  318 (408)
                      +|.+.......+..+++|++|++++|.+... .+..+..+++|++|++++|.++...+..+..+++|+    +|++++|.
T Consensus       109 ~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~l~l~L~ls~n~  188 (276)
T 2z62_A          109 ETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNP  188 (276)
T ss_dssp             TSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCEEEECCSSC
T ss_pred             CCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCcCCHHHhhhhhhccccceeeecCCCc
Confidence            6655544444455666666666666665542 345566667777777777766655444555545554    67777777


Q ss_pred             cCCcCCcccccCCCccEEEcCCccccccCCcCCCCCCCccEEeCCCCccCCcC
Q 037302          319 LSGIVPPEIGNLTHLRQLDLSHNFINGTIPSQLGYIPNISAVDLSKNNLSGVV  371 (408)
Q Consensus       319 ~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~  371 (408)
                      +.+..+..+. ..+|++|++++|++++..+..+..+++|+.|++++|++.+..
T Consensus       189 l~~~~~~~~~-~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c  240 (276)
T 2z62_A          189 MNFIQPGAFK-EIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSC  240 (276)
T ss_dssp             CCEECTTSSC-SCCEEEEECCSSCCSCCCTTTTTTCCSCCEEECCSSCBCCCT
T ss_pred             ccccCccccC-CCcccEEECCCCceeecCHhHhcccccccEEEccCCcccccC
Confidence            7655444443 346777777777777555556677777777777777776544

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=99.89  E-value=1.9e-21  Score=170.03  Aligned_cols=183  Identities=26%  Similarity=0.297  Sum_probs=115.2

Q ss_pred             CCCEEEecCcccccccCcccccccccCeEEccCCcCCCCCCcccCCCCCccEEEccCCcccccCCccccCCCCCCEEeCC
Q 037302          188 NLDSLLLNRNSLTGPIPSTIGYLNLGGKLDLSHNRLDSPIPPTIGNLTNLTSLDLSSNQLSGLLPREVGNLKYLDSLSLD  267 (408)
Q Consensus       188 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~  267 (408)
                      +++.|++++|.+....+..+..+++|++|+++++.+....+..+..+++|++|++++|.+.......+..+++|++|+++
T Consensus        38 ~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~  117 (270)
T 2o6q_A           38 DTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNKLQALPIGVFDQLVNLAELRLD  117 (270)
T ss_dssp             TCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECCSSCCCCCCTTTTTTCSSCCEEECC
T ss_pred             CCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECCCCcCCcCCHhHcccccCCCEEECC
Confidence            44444444444443333344445555555555555544444445556666666666666655444555666667777776


Q ss_pred             CCcccccCCccccCCCCCcEEeCCCCccccCCCcCCcCCCCCcEEEcCCCccCCcCCcccccCCCccEEEcCCccccccC
Q 037302          268 GNNLIGSIPPTIGYLTNLTSLNLGYNQLSSSIPPELMNCSQLQNLVLSHNTLSGIVPPEIGNLTHLRQLDLSHNFINGTI  347 (408)
Q Consensus       268 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~  347 (408)
                      ++.+....+..+..+++|++|++++|.+....+..+..+++|++|++++|.++...+..|..+++|++|++++|++++..
T Consensus       118 ~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~  197 (270)
T 2o6q_A          118 RNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVP  197 (270)
T ss_dssp             SSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCCSCCC
T ss_pred             CCccCeeCHHHhCcCcCCCEEECCCCcCCccCHhHccCCcccceeEecCCcCcEeChhHhccCCCcCEEECCCCcCCcCC
Confidence            66666555555666777777777777777555555667777777777777777666666777777777777777777655


Q ss_pred             CcCCCCCCCccEEeCCCCccCCc
Q 037302          348 PSQLGYIPNISAVDLSKNNLSGV  370 (408)
Q Consensus       348 ~~~~~~~~~L~~L~l~~~~l~~~  370 (408)
                      +..+..+++|+.|++++|++...
T Consensus       198 ~~~~~~l~~L~~L~l~~N~~~c~  220 (270)
T 2o6q_A          198 EGAFDSLEKLKMLQLQENPWDCT  220 (270)
T ss_dssp             TTTTTTCTTCCEEECCSSCBCCS
T ss_pred             HHHhccccCCCEEEecCCCeeCC
Confidence            55667777777777777776543

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=99.89  E-value=4.5e-22  Score=174.67  Aligned_cols=206  Identities=24%  Similarity=0.230  Sum_probs=178.8

Q ss_pred             CCCCEEEecCcccccccCcccccccccCeEEccCCcCCCCCCcccCCCCCccEEEccCCcccccCCccccCCCCCCEEeC
Q 037302          187 KNLDSLLLNRNSLTGPIPSTIGYLNLGGKLDLSHNRLDSPIPPTIGNLTNLTSLDLSSNQLSGLLPREVGNLKYLDSLSL  266 (408)
Q Consensus       187 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l  266 (408)
                      ++++.|++++|.+.+..+..+..++.|++++++++.+....+..+..+++|++|++++|.+....+..+..+++|++|++
T Consensus        28 ~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l  107 (276)
T 2z62_A           28 FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVA  107 (276)
T ss_dssp             TTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEEC
T ss_pred             CCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhcCCccccEEEC
Confidence            57999999999998777778889999999999999998777778899999999999999998777788999999999999


Q ss_pred             CCCcccccCCccccCCCCCcEEeCCCCccccC-CCcCCcCCCCCcEEEcCCCccCCcCCcccccCCCcc----EEEcCCc
Q 037302          267 DGNNLIGSIPPTIGYLTNLTSLNLGYNQLSSS-IPPELMNCSQLQNLVLSHNTLSGIVPPEIGNLTHLR----QLDLSHN  341 (408)
Q Consensus       267 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~-~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~----~L~l~~~  341 (408)
                      +++.+.......+..+++|++|++++|.++.. .+..+.++++|++|++++|++++..+..+..+++|+    .|++++|
T Consensus       108 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~l~l~L~ls~n  187 (276)
T 2z62_A          108 VETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLN  187 (276)
T ss_dssp             TTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCEEEECCSS
T ss_pred             CCCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCcCCHHHhhhhhhccccceeeecCCC
Confidence            99998876666788999999999999999864 477889999999999999999877777777777777    8999999


Q ss_pred             cccccCCcCCCCCCCccEEeCCCCccCCcCCcccc---CCCeEEccCCccCCCCC
Q 037302          342 FINGTIPSQLGYIPNISAVDLSKNNLSGVVPASVR---IIPKLIVSENNLELENS  393 (408)
Q Consensus       342 ~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~---~l~~l~l~~n~~~~~~~  393 (408)
                      .+++..+..+. ..+|+.|++++|+++++.+..+.   ++++|++++|++++..|
T Consensus       188 ~l~~~~~~~~~-~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~  241 (276)
T 2z62_A          188 PMNFIQPGAFK-EIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP  241 (276)
T ss_dssp             CCCEECTTSSC-SCCEEEEECCSSCCSCCCTTTTTTCCSCCEEECCSSCBCCCTT
T ss_pred             cccccCccccC-CCcccEEECCCCceeecCHhHhcccccccEEEccCCcccccCC
Confidence            99966665554 45899999999999988876654   56799999999987554

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=99.89  E-value=2.2e-21  Score=169.50  Aligned_cols=200  Identities=28%  Similarity=0.285  Sum_probs=114.3

Q ss_pred             CCCcEEEcCCCccccccchhhccCCCCcEEeCCCCcCCCCCcccccCCCCCcEEeCCCceecccCcccccCCCCCceeec
Q 037302           19 PNLESIIIPYTLLSGRIPSEIGALSKLEELALPYNSLTGTIPAEIGSLRNLVELDLSNNILNGSIPLEFGNLKDLDALRL   98 (408)
Q Consensus        19 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l   98 (408)
                      ++.+.++++++.+. .+|..+.  +++++|+++++.+....+..|.++++|++|++++|.+....+..|..+++|++|++
T Consensus        16 ~~~~~l~~~~~~l~-~ip~~~~--~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l   92 (270)
T 2o6q_A           16 NNKNSVDCSSKKLT-AIPSNIP--ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWV   92 (270)
T ss_dssp             TTTTEEECTTSCCS-SCCSCCC--TTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEEC
T ss_pred             CCCCEEEccCCCCC-ccCCCCC--CCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEEC
Confidence            35667777766665 3343332  46777777777666555556666777777777776666444445566666777777


Q ss_pred             CCccccccCCCcCCCCCCCCEEEcCCCeecccCcccccCCCCCceEeccCCcccCcCchhhccCCCCCEEEcCCCcCCCC
Q 037302           99 RGNKLDGLIPSSIGNLTNLTHLDLSLNQLSGRLPQEVGNLKNLLSLFLDNNNLTGPIPSTLYHLNQLSNLYLAYNNLVGP  178 (408)
Q Consensus        99 ~~~~i~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~  178 (408)
                      ++|.+..+.+..+..+++|++|++++|.+....+..+..+++|++|++++|.++......+..+++|+.|++++|.+...
T Consensus        93 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~  172 (270)
T 2o6q_A           93 TDNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRV  172 (270)
T ss_dssp             CSSCCCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCC
T ss_pred             CCCcCCcCCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCcCCccCHhHccCCcccceeEecCCcCcEe
Confidence            66666655555566666666666666666555445555666666666666655544444455555566666555555444


Q ss_pred             CCccccCCCCCCEEEecCcccccccCcccccccccCeEEccCC
Q 037302          179 LPKEVGNMKNLDSLLLNRNSLTGPIPSTIGYLNLGGKLDLSHN  221 (408)
Q Consensus       179 ~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~  221 (408)
                      .+..+..+++|+.|++++|.+.......+..++.|+.+++++|
T Consensus       173 ~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N  215 (270)
T 2o6q_A          173 PEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQEN  215 (270)
T ss_dssp             CTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSS
T ss_pred             ChhHhccCCCcCEEECCCCcCCcCCHHHhccccCCCEEEecCC
Confidence            3334445555555555555444333333333444444444443

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.88  E-value=2e-23  Score=197.50  Aligned_cols=237  Identities=22%  Similarity=0.235  Sum_probs=140.9

Q ss_pred             CCCCCceeecCCccccccCCCcCCCCCCCCEEEcCCCeecccCcccccCCCCCceEeccCCcccCcCchhhccCCCCCEE
Q 037302           89 NLKDLDALRLRGNKLDGLIPSSIGNLTNLTHLDLSLNQLSGRLPQEVGNLKNLLSLFLDNNNLTGPIPSTLYHLNQLSNL  168 (408)
Q Consensus        89 ~l~~L~~L~l~~~~i~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L  168 (408)
                      .+++|++|++++|.+....+..|..+++|++|++++|.+.+..+  +..+++|++|++++|.++..     ...++|+.|
T Consensus        32 ~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~l-----~~~~~L~~L  104 (487)
T 3oja_A           32 SAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQEL-----LVGPSIETL  104 (487)
T ss_dssp             TGGGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE--CTTCTTCCEEECCSSEEEEE-----EECTTCCEE
T ss_pred             cCCCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc--cccCCCCCEEEecCCcCCCC-----CCCCCcCEE
Confidence            44578888888888777767777788888888888877764333  66777777777777776532     123566666


Q ss_pred             EcCCCcCCCCCCccccCCCCCCEEEecCcccccccCcccccccccCeEEccCCcCCCCCCcccCCCCCccEEEccCCccc
Q 037302          169 YLAYNNLVGPLPKEVGNMKNLDSLLLNRNSLTGPIPSTIGYLNLGGKLDLSHNRLDSPIPPTIGNLTNLTSLDLSSNQLS  248 (408)
Q Consensus       169 ~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~  248 (408)
                      ++++|.+....+   ..+++|+.|++++|                        .+....+..+..+++|+.|++++|.+.
T Consensus       105 ~L~~N~l~~~~~---~~l~~L~~L~L~~N------------------------~l~~~~~~~~~~l~~L~~L~Ls~N~l~  157 (487)
T 3oja_A          105 HAANNNISRVSC---SRGQGKKNIYLANN------------------------KITMLRDLDEGCRSRVQYLDLKLNEID  157 (487)
T ss_dssp             ECCSSCCCCEEE---CCCSSCEEEECCSS------------------------CCCSGGGBCGGGGSSEEEEECTTSCCC
T ss_pred             ECcCCcCCCCCc---cccCCCCEEECCCC------------------------CCCCCCchhhcCCCCCCEEECCCCCCC
Confidence            666665543211   22344455555444                        444444444445555666666666555


Q ss_pred             ccCCcccc-CCCCCCEEeCCCCcccccCCccccCCCCCcEEeCCCCccccCCCcCCcCCCCCcEEEcCCCccCCcCCccc
Q 037302          249 GLLPREVG-NLKYLDSLSLDGNNLIGSIPPTIGYLTNLTSLNLGYNQLSSSIPPELMNCSQLQNLVLSHNTLSGIVPPEI  327 (408)
Q Consensus       249 ~~~~~~~~-~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~  327 (408)
                      +..+..+. .+++|+.|++++|.+....  ....+++|++|++++|.+++..+ .+..+++|+.|++++|.+.+ .+..+
T Consensus       158 ~~~~~~l~~~l~~L~~L~Ls~N~l~~~~--~~~~l~~L~~L~Ls~N~l~~~~~-~~~~l~~L~~L~Ls~N~l~~-lp~~l  233 (487)
T 3oja_A          158 TVNFAELAASSDTLEHLNLQYNFIYDVK--GQVVFAKLKTLDLSSNKLAFMGP-EFQSAAGVTWISLRNNKLVL-IEKAL  233 (487)
T ss_dssp             EEEGGGGGGGTTTCCEEECTTSCCCEEE--CCCCCTTCCEEECCSSCCCEECG-GGGGGTTCSEEECTTSCCCE-ECTTC
T ss_pred             CcChHHHhhhCCcccEEecCCCcccccc--ccccCCCCCEEECCCCCCCCCCH-hHcCCCCccEEEecCCcCcc-cchhh
Confidence            44444443 4566666666666655331  22245666666666666664333 35566666666666666663 34455


Q ss_pred             ccCCCccEEEcCCcccc-ccCCcCCCCCCCccEEeCC
Q 037302          328 GNLTHLRQLDLSHNFIN-GTIPSQLGYIPNISAVDLS  363 (408)
Q Consensus       328 ~~~~~L~~L~l~~~~~~-~~~~~~~~~~~~L~~L~l~  363 (408)
                      ..+++|+.|++++|++. +..|..+..++.|+.+.+.
T Consensus       234 ~~l~~L~~L~l~~N~l~c~~~~~~~~~l~~L~~l~~~  270 (487)
T 3oja_A          234 RFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQ  270 (487)
T ss_dssp             CCCTTCCEEECTTCCBCHHHHHHHHTTCHHHHHHHHH
T ss_pred             ccCCCCCEEEcCCCCCcCcchHHHHHhCCCCcEEecc
Confidence            66666777777777665 3445555556666665554

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=99.88  E-value=8.3e-22  Score=172.38  Aligned_cols=209  Identities=29%  Similarity=0.275  Sum_probs=145.7

Q ss_pred             ccCCCCCEEEcCCCcCCCCCCccccCCCCCCEEEecCcccccccCcccccccccCeEEccCCcCCCCCCcccCCCCCccE
Q 037302          160 YHLNQLSNLYLAYNNLVGPLPKEVGNMKNLDSLLLNRNSLTGPIPSTIGYLNLGGKLDLSHNRLDSPIPPTIGNLTNLTS  239 (408)
Q Consensus       160 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~l~~~~~L~~  239 (408)
                      ..+++|+.+.++++.+...  ..+..+++|++|++++|.+.+.  ..+..+++|++|++++|.+....+..+..+++|++
T Consensus        38 ~~l~~L~~L~l~~~~i~~~--~~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~  113 (272)
T 3rfs_A           38 NELNSIDQIIANNSDIKSV--QGIQYLPNVRYLALGGNKLHDI--SALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKE  113 (272)
T ss_dssp             HHHTTCCEEECTTSCCCCC--TTGGGCTTCCEEECTTSCCCCC--GGGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCE
T ss_pred             ccccceeeeeeCCCCcccc--cccccCCCCcEEECCCCCCCCc--hhhcCCCCCCEEECCCCccCccChhHhcCCcCCCE
Confidence            3455566666665554422  2345566666666666655532  24556666777777766666655556667777777


Q ss_pred             EEccCCcccccCCccccCCCCCCEEeCCCCcccccCCccccCCCCCcEEeCCCCccccCCCcCCcCCCCCcEEEcCCCcc
Q 037302          240 LDLSSNQLSGLLPREVGNLKYLDSLSLDGNNLIGSIPPTIGYLTNLTSLNLGYNQLSSSIPPELMNCSQLQNLVLSHNTL  319 (408)
Q Consensus       240 L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~  319 (408)
                      |++++|.+....+..+..+++|++|++++|.+....+..+..+++|++|++++|.++...+..+..+++|++|++++|++
T Consensus       114 L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l  193 (272)
T 3rfs_A          114 LVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQL  193 (272)
T ss_dssp             EECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC
T ss_pred             EECCCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCCcCccCHHHhcCCccCCEEECCCCcC
Confidence            77777777765556667777788888887777755555667778888888888888766666677788888888888888


Q ss_pred             CCcCCcccccCCCccEEEcCCccccccCCcCCCCCCCccEEeCCCCccCCcCCccccCCC
Q 037302          320 SGIVPPEIGNLTHLRQLDLSHNFINGTIPSQLGYIPNISAVDLSKNNLSGVVPASVRIIP  379 (408)
Q Consensus       320 ~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~l~  379 (408)
                      .+..+..+..+++|+.|++++|++.       ..+++|+.+.+..|++.|.+|..++.+.
T Consensus       194 ~~~~~~~~~~l~~L~~L~l~~N~~~-------~~~~~l~~l~~~~n~~~g~ip~~~~~~~  246 (272)
T 3rfs_A          194 KSVPDGVFDRLTSLQYIWLHDNPWD-------CTCPGIRYLSEWINKHSGVVRNSAGSVA  246 (272)
T ss_dssp             SCCCTTTTTTCTTCCEEECCSSCBC-------CCTTTTHHHHHHHHHTGGGBBCTTSCBC
T ss_pred             CccCHHHHhCCcCCCEEEccCCCcc-------ccCcHHHHHHHHHHhCCCcccCcccccC
Confidence            7776666777888888888888665       3466788888888888888887777665

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=99.87  E-value=3e-23  Score=187.68  Aligned_cols=234  Identities=20%  Similarity=0.240  Sum_probs=129.3

Q ss_pred             CCCCEEEcCCCcCCCCCCccccCCCCCCEEEecCcccccc-cCcccccccccCeEEccCCcCCCCCCcccCCCCCccEEE
Q 037302          163 NQLSNLYLAYNNLVGPLPKEVGNMKNLDSLLLNRNSLTGP-IPSTIGYLNLGGKLDLSHNRLDSPIPPTIGNLTNLTSLD  241 (408)
Q Consensus       163 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~-~~~~~~~~~~L~~l~l~~~~~~~~~~~~l~~~~~L~~L~  241 (408)
                      +.++.+++.++.+....+. +..+++|++|++++|.+.+. .+..+..+++|++|++++|.+....+..++.+++|++|+
T Consensus        70 ~~l~~L~l~~n~l~~~~~~-~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~  148 (336)
T 2ast_B           70 QGVIAFRCPRSFMDQPLAE-HFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLN  148 (336)
T ss_dssp             TTCSEEECTTCEECSCCCS-CCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEE
T ss_pred             ccceEEEcCCccccccchh-hccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEE
Confidence            4444444444444332222 23445555555555544322 333445555555555555554433344455566666666


Q ss_pred             ccCC-ccccc-CCccccCCCCCCEEeCCCC-ccccc-CCccccCCC-CCcEEeCCCCc--cc-cCCCcCCcCCCCCcEEE
Q 037302          242 LSSN-QLSGL-LPREVGNLKYLDSLSLDGN-NLIGS-IPPTIGYLT-NLTSLNLGYNQ--LS-SSIPPELMNCSQLQNLV  313 (408)
Q Consensus       242 l~~~-~~~~~-~~~~~~~~~~L~~L~l~~~-~~~~~-~~~~~~~~~-~L~~L~l~~~~--~~-~~~~~~~~~~~~L~~L~  313 (408)
                      +++| .+++. .+..+..+++|++|++++| .+.+. .+..+..++ +|++|++++|.  ++ ...+..+..+++|++|+
T Consensus       149 L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~  228 (336)
T 2ast_B          149 LSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLD  228 (336)
T ss_dssp             CTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEE
T ss_pred             CCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeCCCcccCCHHHHHHHHhhCCCCCEEe
Confidence            6666 44432 3334555667777777776 55432 234455666 77777777763  33 12233445567777777


Q ss_pred             cCCCc-cCCcCCcccccCCCccEEEcCCcc-ccccCCcCCCCCCCccEEeCCCCccCCcCCccc-cCCCeEEccCCccCC
Q 037302          314 LSHNT-LSGIVPPEIGNLTHLRQLDLSHNF-INGTIPSQLGYIPNISAVDLSKNNLSGVVPASV-RIIPKLIVSENNLEL  390 (408)
Q Consensus       314 l~~~~-~~~~~~~~~~~~~~L~~L~l~~~~-~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~-~~l~~l~l~~n~~~~  390 (408)
                      +++|. +++.....+..+++|++|++++|. +.+.....+..+++|+.|++++| +....-+.+ .++..|++++|++++
T Consensus       229 l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~-i~~~~~~~l~~~l~~L~l~~n~l~~  307 (336)
T 2ast_B          229 LSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI-VPDGTLQLLKEALPHLQINCSHFTT  307 (336)
T ss_dssp             CTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS-SCTTCHHHHHHHSTTSEESCCCSCC
T ss_pred             CCCCCcCCHHHHHHHhCCCCCCEeeCCCCCCCCHHHHHHHhcCCCCCEEeccCc-cCHHHHHHHHhhCcceEEecccCcc
Confidence            77776 554555566677777777777773 33222234566777777777777 332221222 236677777777777


Q ss_pred             CCCCCcCC
Q 037302          391 ENSTSSEN  398 (408)
Q Consensus       391 ~~~~~~~~  398 (408)
                      ..|..+.+
T Consensus       308 ~~~~~~~~  315 (336)
T 2ast_B          308 IARPTIGN  315 (336)
T ss_dssp             TTCSSCSS
T ss_pred             ccCCcccc
Confidence            77766553

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=99.87  E-value=1.6e-21  Score=167.28  Aligned_cols=197  Identities=16%  Similarity=0.178  Sum_probs=147.9

Q ss_pred             CCCEEEecCcccccccCcccccccccCeEEccCCc-CCCCCCcccCCCCCccEEEccC-CcccccCCccccCCCCCCEEe
Q 037302          188 NLDSLLLNRNSLTGPIPSTIGYLNLGGKLDLSHNR-LDSPIPPTIGNLTNLTSLDLSS-NQLSGLLPREVGNLKYLDSLS  265 (408)
Q Consensus       188 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~-~~~~~~~~l~~~~~L~~L~l~~-~~~~~~~~~~~~~~~~L~~L~  265 (408)
                      +++.|++++|.+....+..+..+++|++++++++. +....+..+..+++|++|++++ +.+....+..|..+++|++|+
T Consensus        32 ~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L~  111 (239)
T 2xwt_C           32 STQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLG  111 (239)
T ss_dssp             TCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEEE
T ss_pred             cccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEEe
Confidence            56677777766665555566667777777777765 6555555667777888888877 677655666677778888888


Q ss_pred             CCCCcccccCCccccCCCCCc---EEeCCCC-ccccCCCcCCcCCCCCc-EEEcCCCccCCcCCcccccCCCccEEEcCC
Q 037302          266 LDGNNLIGSIPPTIGYLTNLT---SLNLGYN-QLSSSIPPELMNCSQLQ-NLVLSHNTLSGIVPPEIGNLTHLRQLDLSH  340 (408)
Q Consensus       266 l~~~~~~~~~~~~~~~~~~L~---~L~l~~~-~~~~~~~~~~~~~~~L~-~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~  340 (408)
                      +++|.+.. .+. +..+++|+   +|++++| .++...+..+.++++|+ +|++++|+++.+....+.. ++|++|++++
T Consensus       112 l~~n~l~~-lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~~i~~~~~~~-~~L~~L~L~~  188 (239)
T 2xwt_C          112 IFNTGLKM-FPD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFTSVQGYAFNG-TKLDAVYLNK  188 (239)
T ss_dssp             EEEECCCS-CCC-CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCCEECTTTTTT-CEEEEEECTT
T ss_pred             CCCCCCcc-ccc-cccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCcccCHhhcCC-CCCCEEEcCC
Confidence            88877764 333 66777777   8888888 78766666788888888 9999888887555555555 7899999999


Q ss_pred             cc-ccccCCcCCCCC-CCccEEeCCCCccCCcCCccccCCCeEEccCCc
Q 037302          341 NF-INGTIPSQLGYI-PNISAVDLSKNNLSGVVPASVRIIPKLIVSENN  387 (408)
Q Consensus       341 ~~-~~~~~~~~~~~~-~~L~~L~l~~~~l~~~~~~~~~~l~~l~l~~n~  387 (408)
                      |+ +++..+..+..+ ++|+.|++++|+++.+.+..+.++++|++++++
T Consensus       189 n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~~l~~~~~~~L~~L~l~~~~  237 (239)
T 2xwt_C          189 NKYLTVIDKDAFGGVYSGPSLLDVSQTSVTALPSKGLEHLKELIARNTW  237 (239)
T ss_dssp             CTTCCEECTTTTTTCSBCCSEEECTTCCCCCCCCTTCTTCSEEECTTC-
T ss_pred             CCCcccCCHHHhhccccCCcEEECCCCccccCChhHhccCceeeccCcc
Confidence            95 886667778888 899999999999988877888888888888775

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=99.87  E-value=1.2e-20  Score=166.24  Aligned_cols=205  Identities=25%  Similarity=0.196  Sum_probs=170.6

Q ss_pred             hhccCCCCCEEEcCCCcCCCCCCccccCCCCCCEEEecCcccccccCcccccccccCeEEccCCcCCCCCCcccCCCCCc
Q 037302          158 TLYHLNQLSNLYLAYNNLVGPLPKEVGNMKNLDSLLLNRNSLTGPIPSTIGYLNLGGKLDLSHNRLDSPIPPTIGNLTNL  237 (408)
Q Consensus       158 ~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~l~~~~~L  237 (408)
                      .+..++++++++++++.+... +..+  .++++.|++++|.+....+..+..++.|+.|+++++.+.....  ...+++|
T Consensus         5 ~~~~l~~l~~l~~~~~~l~~i-p~~~--~~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L   79 (290)
T 1p9a_G            5 EVSKVASHLEVNCDKRNLTAL-PPDL--PKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQV--DGTLPVL   79 (290)
T ss_dssp             EEECSTTCCEEECTTSCCSSC-CSCC--CTTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEEC--CSCCTTC
T ss_pred             cccccCCccEEECCCCCCCcC-CCCC--CCCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccC--CCCCCcC
Confidence            356688899999998887643 3322  3789999999999887777788889999999999998875433  2678899


Q ss_pred             cEEEccCCcccccCCccccCCCCCCEEeCCCCcccccCCccccCCCCCcEEeCCCCccccCCCcCCcCCCCCcEEEcCCC
Q 037302          238 TSLDLSSNQLSGLLPREVGNLKYLDSLSLDGNNLIGSIPPTIGYLTNLTSLNLGYNQLSSSIPPELMNCSQLQNLVLSHN  317 (408)
Q Consensus       238 ~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~  317 (408)
                      +.|++++|.+. ..+..+..+++|+.|++++|.+....+..+..+++|++|++++|.++...+..+..+++|+.|++++|
T Consensus        80 ~~L~Ls~N~l~-~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N  158 (290)
T 1p9a_G           80 GTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANN  158 (290)
T ss_dssp             CEEECCSSCCS-SCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTS
T ss_pred             CEEECCCCcCC-cCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCEEECCCC
Confidence            99999999887 45566778899999999999988777778889999999999999999777777888999999999999


Q ss_pred             ccCCcCCcccccCCCccEEEcCCccccccCCcCCCCCCCccEEeCCCCccCC
Q 037302          318 TLSGIVPPEIGNLTHLRQLDLSHNFINGTIPSQLGYIPNISAVDLSKNNLSG  369 (408)
Q Consensus       318 ~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~  369 (408)
                      +++......+..+++|+.|++++|+++ .+|..+...++|+.+++++|++..
T Consensus       159 ~l~~l~~~~~~~l~~L~~L~L~~N~l~-~ip~~~~~~~~L~~l~L~~Np~~C  209 (290)
T 1p9a_G          159 NLTELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGNPWLC  209 (290)
T ss_dssp             CCSCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCCCSEEECCSCCBCC
T ss_pred             cCCccCHHHhcCcCCCCEEECCCCcCC-ccChhhcccccCCeEEeCCCCccC
Confidence            998777777888999999999999998 667777778899999999998864

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=99.86  E-value=2.2e-20  Score=164.63  Aligned_cols=204  Identities=31%  Similarity=0.289  Sum_probs=172.6

Q ss_pred             cccCCCCCceEeccCCcccCcCchhhccCCCCCEEEcCCCcCCCCCCccccCCCCCCEEEecCcccccccCccccccccc
Q 037302          134 EVGNLKNLLSLFLDNNNLTGPIPSTLYHLNQLSNLYLAYNNLVGPLPKEVGNMKNLDSLLLNRNSLTGPIPSTIGYLNLG  213 (408)
Q Consensus       134 ~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L  213 (408)
                      .+..++++++++++++.++. ++..+  .+.++.|++++|.+....+..+..+++|+.|++++|.+.....  ...++.|
T Consensus         5 ~~~~l~~l~~l~~~~~~l~~-ip~~~--~~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L   79 (290)
T 1p9a_G            5 EVSKVASHLEVNCDKRNLTA-LPPDL--PKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQV--DGTLPVL   79 (290)
T ss_dssp             EEECSTTCCEEECTTSCCSS-CCSCC--CTTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEEC--CSCCTTC
T ss_pred             cccccCCccEEECCCCCCCc-CCCCC--CCCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccC--CCCCCcC
Confidence            45678899999999988874 44333  3689999999999877666788999999999999998875433  2678999


Q ss_pred             CeEEccCCcCCCCCCcccCCCCCccEEEccCCcccccCCccccCCCCCCEEeCCCCcccccCCccccCCCCCcEEeCCCC
Q 037302          214 GKLDLSHNRLDSPIPPTIGNLTNLTSLDLSSNQLSGLLPREVGNLKYLDSLSLDGNNLIGSIPPTIGYLTNLTSLNLGYN  293 (408)
Q Consensus       214 ~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~  293 (408)
                      +.|+++++.+.. .+..+..+++|+.|++++|.++...+..|..+++|+.|++++|.+....+..+..+++|++|++++|
T Consensus        80 ~~L~Ls~N~l~~-l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N  158 (290)
T 1p9a_G           80 GTLDLSHNQLQS-LPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANN  158 (290)
T ss_dssp             CEEECCSSCCSS-CCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTS
T ss_pred             CEEECCCCcCCc-CchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCEEECCCC
Confidence            999999998874 5567788899999999999998777788899999999999999998777777888999999999999


Q ss_pred             ccccCCCcCCcCCCCCcEEEcCCCccCCcCCcccccCCCccEEEcCCcccc
Q 037302          294 QLSSSIPPELMNCSQLQNLVLSHNTLSGIVPPEIGNLTHLRQLDLSHNFIN  344 (408)
Q Consensus       294 ~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~  344 (408)
                      .++...+..+..+++|+.|++++|+++ ..+..+...++|+.+++++|+..
T Consensus       159 ~l~~l~~~~~~~l~~L~~L~L~~N~l~-~ip~~~~~~~~L~~l~L~~Np~~  208 (290)
T 1p9a_G          159 NLTELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGNPWL  208 (290)
T ss_dssp             CCSCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCCCSEEECCSCCBC
T ss_pred             cCCccCHHHhcCcCCCCEEECCCCcCC-ccChhhcccccCCeEEeCCCCcc
Confidence            999777777888999999999999998 45666677789999999999876

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}

Probab=99.86  E-value=7.4e-23  Score=186.73  Aligned_cols=255  Identities=23%  Similarity=0.228  Sum_probs=135.1

Q ss_pred             eecCCccccccCCCcCCCCCCCCEEEcCCCeecccCc----ccccCCC-CCceEeccCCcccCcCchhhccC-----CCC
Q 037302           96 LRLRGNKLDGLIPSSIGNLTNLTHLDLSLNQLSGRLP----QEVGNLK-NLLSLFLDNNNLTGPIPSTLYHL-----NQL  165 (408)
Q Consensus        96 L~l~~~~i~~~~~~~l~~l~~L~~L~l~~~~~~~~~~----~~~~~l~-~L~~L~l~~~~~~~~~~~~~~~~-----~~L  165 (408)
                      .+++.+.+....+..+...++|++|++++|.+....+    ..+..++ +|++|++++|.+.......+..+     ++|
T Consensus         3 ~~ls~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L   82 (362)
T 3goz_A            3 YKLTLHPGSNPVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANV   82 (362)
T ss_dssp             EECCCCTTCCHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTC
T ss_pred             cccccccchHHHHHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCc
Confidence            4566666665555555555668888888877765554    5566666 77777777777765555555543     677


Q ss_pred             CEEEcCCCcCCCCCCcc----ccCC-CCCCEEEecCcccccccCcccccccccCeEEccCCcCCCCCCcccCC-CCCccE
Q 037302          166 SNLYLAYNNLVGPLPKE----VGNM-KNLDSLLLNRNSLTGPIPSTIGYLNLGGKLDLSHNRLDSPIPPTIGN-LTNLTS  239 (408)
Q Consensus       166 ~~L~l~~~~~~~~~~~~----~~~~-~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~l~~-~~~L~~  239 (408)
                      ++|++++|.+....+..    +..+ ++|++|++++|.+.+.....+..                    .+.. +++|++
T Consensus        83 ~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~--------------------~l~~~~~~L~~  142 (362)
T 3goz_A           83 TSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQ--------------------AFSNLPASITS  142 (362)
T ss_dssp             CEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHH--------------------HHTTSCTTCCE
T ss_pred             cEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHH--------------------HHHhCCCceeE
Confidence            77777777665433332    2333 56666666666655332222211                    1112 234555


Q ss_pred             EEccCCcccccCCc----cccCCC-CCCEEeCCCCcccccCCc----cccCC-CCCcEEeCCCCccccCCCc----CCcC
Q 037302          240 LDLSSNQLSGLLPR----EVGNLK-YLDSLSLDGNNLIGSIPP----TIGYL-TNLTSLNLGYNQLSSSIPP----ELMN  305 (408)
Q Consensus       240 L~l~~~~~~~~~~~----~~~~~~-~L~~L~l~~~~~~~~~~~----~~~~~-~~L~~L~l~~~~~~~~~~~----~~~~  305 (408)
                      |++++|.+++....    .+...+ +|++|++++|.+.+....    .+..+ ++|++|++++|.+++....    .+..
T Consensus       143 L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~  222 (362)
T 3goz_A          143 LNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSS  222 (362)
T ss_dssp             EECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHH
T ss_pred             EEccCCcCCHHHHHHHHHHHhcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhc
Confidence            55555544432221    122333 555555555555433221    22233 3566666666655542221    2222


Q ss_pred             -CCCCcEEEcCCCccCCcCC----cccccCCCccEEEcCCcccccc-------CCcCCCCCCCccEEeCCCCccCCc
Q 037302          306 -CSQLQNLVLSHNTLSGIVP----PEIGNLTHLRQLDLSHNFINGT-------IPSQLGYIPNISAVDLSKNNLSGV  370 (408)
Q Consensus       306 -~~~L~~L~l~~~~~~~~~~----~~~~~~~~L~~L~l~~~~~~~~-------~~~~~~~~~~L~~L~l~~~~l~~~  370 (408)
                       .++|++|++++|.+.+...    ..+..+++|+.|++++|.+.+.       ++..+..+++|+.|++++|++...
T Consensus       223 ~~~~L~~L~Ls~N~l~~~~~~~l~~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N~l~~~  299 (362)
T 3goz_A          223 IPNHVVSLNLCLNCLHGPSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEIHPS  299 (362)
T ss_dssp             SCTTCCEEECCSSCCCCCCHHHHHHTTTTTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTTCCEEEEECTTSCBCCGG
T ss_pred             CCCCceEEECcCCCCCcHHHHHHHHHHhcCCCccEEEeccCCccccCHHHHHHHHHHhccCCceEEEecCCCcCCCc
Confidence             2466666666666554322    2234456666666666663322       223455566666666766666544

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=99.84  E-value=3.3e-22  Score=180.76  Aligned_cols=102  Identities=25%  Similarity=0.248  Sum_probs=58.3

Q ss_pred             CCcEEeCCCceecccCcccccCC--CCCceeecCCccccccCCCcCCCCCCCCEEEcCCCeeccc-CcccccCCCCCceE
Q 037302           68 NLVELDLSNNILNGSIPLEFGNL--KDLDALRLRGNKLDGLIPSSIGNLTNLTHLDLSLNQLSGR-LPQEVGNLKNLLSL  144 (408)
Q Consensus        68 ~L~~L~l~~~~~~~~~~~~~~~l--~~L~~L~l~~~~i~~~~~~~l~~l~~L~~L~l~~~~~~~~-~~~~~~~l~~L~~L  144 (408)
                      .++.++++++.+.   +..+..+  ++++.++++++.+....+. +..+++|++|++++|.+... .+..+..+++|++|
T Consensus        48 ~~~~l~l~~~~~~---~~~~~~~~~~~l~~L~l~~n~l~~~~~~-~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L  123 (336)
T 2ast_B           48 LWQTLDLTGKNLH---PDVTGRLLSQGVIAFRCPRSFMDQPLAE-HFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNL  123 (336)
T ss_dssp             TSSEEECTTCBCC---HHHHHHHHHTTCSEEECTTCEECSCCCS-CCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEE
T ss_pred             hheeeccccccCC---HHHHHhhhhccceEEEcCCccccccchh-hccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEE
Confidence            4667777766554   3334444  6677777777766544433 44566666666666665432 34445556666666


Q ss_pred             eccCCcccCcCchhhccCCCCCEEEcCCC
Q 037302          145 FLDNNNLTGPIPSTLYHLNQLSNLYLAYN  173 (408)
Q Consensus       145 ~l~~~~~~~~~~~~~~~~~~L~~L~l~~~  173 (408)
                      ++++|.+++..+..+..+++|++|++++|
T Consensus       124 ~L~~~~l~~~~~~~l~~~~~L~~L~L~~~  152 (336)
T 2ast_B          124 SLEGLRLSDPIVNTLAKNSNLVRLNLSGC  152 (336)
T ss_dssp             ECTTCBCCHHHHHHHTTCTTCSEEECTTC
T ss_pred             eCcCcccCHHHHHHHhcCCCCCEEECCCC
Confidence            66666554444444455555555555555

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=99.84  E-value=1.7e-19  Score=155.80  Aligned_cols=179  Identities=29%  Similarity=0.293  Sum_probs=127.5

Q ss_pred             CCEEEecCcccccccCcccccccccCeEEccCCcCCCCCCcccCCCCCccEEEccCCcccccCCccccCCCCCCEEeCCC
Q 037302          189 LDSLLLNRNSLTGPIPSTIGYLNLGGKLDLSHNRLDSPIPPTIGNLTNLTSLDLSSNQLSGLLPREVGNLKYLDSLSLDG  268 (408)
Q Consensus       189 L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~  268 (408)
                      .+.++++++.+... +..+  .+.++.|+++++.+....+..+..+++|++|++++|.+....+..+..+++|++|++++
T Consensus        16 ~~~l~~~~~~l~~~-p~~~--~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~   92 (251)
T 3m19_A           16 KKEVDCQGKSLDSV-PSGI--PADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLAN   92 (251)
T ss_dssp             GTEEECTTCCCSSC-CSCC--CTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTT
T ss_pred             CeEEecCCCCcccc-CCCC--CCCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECCC
Confidence            34455555444422 2111  24566666766666666666667777777777777777766666677777788888877


Q ss_pred             CcccccCCccccCCCCCcEEeCCCCccccCCCcCCcCCCCCcEEEcCCCccCCcCCcccccCCCccEEEcCCccccccCC
Q 037302          269 NNLIGSIPPTIGYLTNLTSLNLGYNQLSSSIPPELMNCSQLQNLVLSHNTLSGIVPPEIGNLTHLRQLDLSHNFINGTIP  348 (408)
Q Consensus       269 ~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~  348 (408)
                      +.+....+..+..+++|++|++++|.++...+..+..+++|++|++++|.+++..+..+..+++|++|++++|++++..+
T Consensus        93 n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~  172 (251)
T 3m19_A           93 NQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVPH  172 (251)
T ss_dssp             SCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCT
T ss_pred             CcccccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCCcCCccCH
Confidence            77776666667777888888888888876666667778888888888888876666677788888888888888886666


Q ss_pred             cCCCCCCCccEEeCCCCccCCc
Q 037302          349 SQLGYIPNISAVDLSKNNLSGV  370 (408)
Q Consensus       349 ~~~~~~~~L~~L~l~~~~l~~~  370 (408)
                      ..+..+++|+.|++++|++...
T Consensus       173 ~~~~~l~~L~~L~l~~N~~~c~  194 (251)
T 3m19_A          173 GAFDRLGKLQTITLFGNQFDCS  194 (251)
T ss_dssp             TTTTTCTTCCEEECCSCCBCTT
T ss_pred             HHHhCCCCCCEEEeeCCceeCC
Confidence            6777888888888888888765

>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}

Probab=99.84  E-value=3.4e-19  Score=164.32  Aligned_cols=336  Identities=14%  Similarity=0.051  Sum_probs=228.6

Q ss_pred             CcccccccccCCCCCCcEEEcCCCccccccchhhccCCCCcEEeCCCCcCCCCCcccccCCCCCcEEeCCCceecccCcc
Q 037302            6 NAAELSQLNFTCFPNLESIIIPYTLLSGRIPSEIGALSKLEELALPYNSLTGTIPAEIGSLRNLVELDLSNNILNGSIPL   85 (408)
Q Consensus         6 ~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~   85 (408)
                      +|+.|+..||.+|.+|+.+.+... +...-..+|..|.+|+.+.+.++ ++.+...+|.++..|+.+.+..+ +......
T Consensus        58 ~VtsIg~~AF~~c~~L~~i~lp~~-i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~c~~L~~i~~p~~-l~~i~~~  134 (394)
T 4fs7_A           58 DVVSIGYAAFQGCRKVTEIKIPST-VREIGEFAFENCSKLEIINIPDS-VKMIGRCTFSGCYALKSILLPLM-LKSIGVE  134 (394)
T ss_dssp             EEEEECTTTTTTCTTEEEEECCTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCCCCCCTT-CCEECTT
T ss_pred             eEeEhHHHHhhCCCCceEEEeCCC-ccCcchhHhhCCCCCcEEEeCCC-ceEccchhhcccccchhhcccCc-eeeecce
Confidence            588899999999999999999743 44344567899999999999765 55566778899999998887765 3224556


Q ss_pred             cccCCCCCceeecCCccccccCCCcCCCCCCCCEEEcCCCeecccCcccccCCCCCceEeccCCcccCcCchhhccCCCC
Q 037302           86 EFGNLKDLDALRLRGNKLDGLIPSSIGNLTNLTHLDLSLNQLSGRLPQEVGNLKNLLSLFLDNNNLTGPIPSTLYHLNQL  165 (408)
Q Consensus        86 ~~~~l~~L~~L~l~~~~i~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L  165 (408)
                      +|.++..++.......  ..+...+|.++++|+.+.+..+.. .....+|..+++|+.+.+..+ ++.+....+..+..|
T Consensus       135 aF~~~~~~~~~~~~~~--~~i~~~aF~~c~~L~~i~l~~~~~-~I~~~~F~~c~~L~~i~l~~~-~~~I~~~~F~~~~~L  210 (394)
T 4fs7_A          135 AFKGCDFKEITIPEGV--TVIGDEAFATCESLEYVSLPDSME-TLHNGLFSGCGKLKSIKLPRN-LKIIRDYCFAECILL  210 (394)
T ss_dssp             TTTTCCCSEEECCTTC--CEECTTTTTTCTTCCEEECCTTCC-EECTTTTTTCTTCCBCCCCTT-CCEECTTTTTTCTTC
T ss_pred             eeecccccccccCccc--cccchhhhcccCCCcEEecCCccc-eeccccccCCCCceEEEcCCC-ceEeCchhhcccccc
Confidence            6776654443333332  335567788899999999876532 255667888889999888765 444556677888888


Q ss_pred             CEEEcCCCcCCCCCCccccCCCCCCEEEecCcccccccCcccccccccCeEEccCCcCCCCCCcccCCCCCccEEEccCC
Q 037302          166 SNLYLAYNNLVGPLPKEVGNMKNLDSLLLNRNSLTGPIPSTIGYLNLGGKLDLSHNRLDSPIPPTIGNLTNLTSLDLSSN  245 (408)
Q Consensus       166 ~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~  245 (408)
                      +.+.+..+...  ..........|+.+.+.... .......+..+..++.+.+..+.. ......+..+..++.+.....
T Consensus       211 ~~i~~~~~~~~--i~~~~~~~~~l~~i~ip~~~-~~i~~~~f~~~~~l~~~~~~~~~~-~i~~~~F~~~~~l~~~~~~~~  286 (394)
T 4fs7_A          211 ENMEFPNSLYY--LGDFALSKTGVKNIIIPDSF-TELGKSVFYGCTDLESISIQNNKL-RIGGSLFYNCSGLKKVIYGSV  286 (394)
T ss_dssp             CBCCCCTTCCE--ECTTTTTTCCCCEEEECTTC-CEECSSTTTTCSSCCEEEECCTTC-EECSCTTTTCTTCCEEEECSS
T ss_pred             ceeecCCCceE--eehhhcccCCCceEEECCCc-eecccccccccccceeEEcCCCcc-eeeccccccccccceeccCce
Confidence            88877654321  11223445678888776532 223445667777888887765432 244556777778887777654


Q ss_pred             cccccCCccccCCCCCCEEeCCCCcccccCCccccCCCCCcEEeCCCCccccCCCcCCcCCCCCcEEEcCCCccCCcCCc
Q 037302          246 QLSGLLPREVGNLKYLDSLSLDGNNLIGSIPPTIGYLTNLTSLNLGYNQLSSSIPPELMNCSQLQNLVLSHNTLSGIVPP  325 (408)
Q Consensus       246 ~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~  325 (408)
                      .+   ....+..+.+|+.+.+..+ +......++.+|.+|+.++|.++ ++.....+|.+|.+|+.+.+..+ ++.+...
T Consensus       287 ~i---~~~~F~~~~~L~~i~l~~~-i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~  360 (394)
T 4fs7_A          287 IV---PEKTFYGCSSLTEVKLLDS-VKFIGEEAFESCTSLVSIDLPYL-VEEIGKRSFRGCTSLSNINFPLS-LRKIGAN  360 (394)
T ss_dssp             EE---CTTTTTTCTTCCEEEECTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTT
T ss_pred             ee---ccccccccccccccccccc-cceechhhhcCCCCCCEEEeCCc-ccEEhHHhccCCCCCCEEEECcc-ccEehHH
Confidence            32   3345667788888887654 33345566777888888888654 55566677888888888888765 5556677


Q ss_pred             ccccCCCccEEEcCCccccccCCcCCCCCCCccEE
Q 037302          326 EIGNLTHLRQLDLSHNFINGTIPSQLGYIPNISAV  360 (408)
Q Consensus       326 ~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L  360 (408)
                      +|.+|++|+.+++..+ +. ....+|.+|.+|+.+
T Consensus       361 aF~~C~~L~~i~lp~~-~~-~~~~~F~~c~~L~~I  393 (394)
T 4fs7_A          361 AFQGCINLKKVELPKR-LE-QYRYDFEDTTKFKWI  393 (394)
T ss_dssp             TBTTCTTCCEEEEEGG-GG-GGGGGBCTTCEEEEE
T ss_pred             HhhCCCCCCEEEECCC-CE-EhhheecCCCCCcEE
Confidence            8888888888888655 22 234567777777765

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=99.84  E-value=2.5e-20  Score=165.86  Aligned_cols=193  Identities=26%  Similarity=0.356  Sum_probs=109.3

Q ss_pred             cCCCCCceEeccCCcccCcCchhhccCCCCCEEEcCCCcCCCCCCccccCCCCCCEEEecCcccccccCcccccccccCe
Q 037302          136 GNLKNLLSLFLDNNNLTGPIPSTLYHLNQLSNLYLAYNNLVGPLPKEVGNMKNLDSLLLNRNSLTGPIPSTIGYLNLGGK  215 (408)
Q Consensus       136 ~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~  215 (408)
                      ..+++|++|+++++.+... + .+..+++|+.|++++|.+....+  +..+++|++|++++|.+.+.  ..+..++.|+.
T Consensus        38 ~~l~~L~~L~l~~~~i~~l-~-~~~~l~~L~~L~L~~n~i~~~~~--~~~l~~L~~L~L~~n~l~~~--~~~~~l~~L~~  111 (308)
T 1h6u_A           38 ADLDGITTLSAFGTGVTTI-E-GVQYLNNLIGLELKDNQITDLAP--LKNLTKITELELSGNPLKNV--SAIAGLQSIKT  111 (308)
T ss_dssp             HHHHTCCEEECTTSCCCCC-T-TGGGCTTCCEEECCSSCCCCCGG--GTTCCSCCEEECCSCCCSCC--GGGTTCTTCCE
T ss_pred             HHcCCcCEEEeeCCCccCc-h-hhhccCCCCEEEccCCcCCCChh--HccCCCCCEEEccCCcCCCc--hhhcCCCCCCE
Confidence            4466777777777766532 2 45667777777777776654322  66667777777777666532  24555666666


Q ss_pred             EEccCCcCCCCCCcccCCCCCccEEEccCCcccccCCccccCCCCCCEEeCCCCcccccCCccccCCCCCcEEeCCCCcc
Q 037302          216 LDLSHNRLDSPIPPTIGNLTNLTSLDLSSNQLSGLLPREVGNLKYLDSLSLDGNNLIGSIPPTIGYLTNLTSLNLGYNQL  295 (408)
Q Consensus       216 l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~  295 (408)
                      |++++|.+....  .+..+++|++|++++|.+.+...  +..+++|+.|++++|.+.+...  +..+++|++|++++|.+
T Consensus       112 L~l~~n~l~~~~--~l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~l  185 (308)
T 1h6u_A          112 LDLTSTQITDVT--PLAGLSNLQVLYLDLNQITNISP--LAGLTNLQYLSIGNAQVSDLTP--LANLSKLTTLKADDNKI  185 (308)
T ss_dssp             EECTTSCCCCCG--GGTTCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCC
T ss_pred             EECCCCCCCCch--hhcCCCCCCEEECCCCccCcCcc--ccCCCCccEEEccCCcCCCChh--hcCCCCCCEEECCCCcc
Confidence            666666555421  25555666666666665543222  4455566666666665543221  45555666666666655


Q ss_pred             ccCCCcCCcCCCCCcEEEcCCCccCCcCCcccccCCCccEEEcCCcccc
Q 037302          296 SSSIPPELMNCSQLQNLVLSHNTLSGIVPPEIGNLTHLRQLDLSHNFIN  344 (408)
Q Consensus       296 ~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~  344 (408)
                      ++..+  +..+++|++|++++|++.+..  .+..+++|+.|++++|+++
T Consensus       186 ~~~~~--l~~l~~L~~L~L~~N~l~~~~--~l~~l~~L~~L~l~~N~i~  230 (308)
T 1h6u_A          186 SDISP--LASLPNLIEVHLKNNQISDVS--PLANTSNLFIVTLTNQTIT  230 (308)
T ss_dssp             CCCGG--GGGCTTCCEEECTTSCCCBCG--GGTTCTTCCEEEEEEEEEE
T ss_pred             CcChh--hcCCCCCCEEEccCCccCccc--cccCCCCCCEEEccCCeee
Confidence            53221  455555666666666555332  3455555666666665555

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=99.84  E-value=2.3e-19  Score=154.89  Aligned_cols=178  Identities=26%  Similarity=0.299  Sum_probs=156.8

Q ss_pred             cccCeEEccCCcCCCCCCcccCCCCCccEEEccCCcccccCCccccCCCCCCEEeCCCCcccccCCccccCCCCCcEEeC
Q 037302          211 NLGGKLDLSHNRLDSPIPPTIGNLTNLTSLDLSSNQLSGLLPREVGNLKYLDSLSLDGNNLIGSIPPTIGYLTNLTSLNL  290 (408)
Q Consensus       211 ~~L~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l  290 (408)
                      ...+.++++++.+... |..+.  +.++.|+++++.+....+..+..+++|++|+++++.+....+..+..+++|++|++
T Consensus        14 ~~~~~l~~~~~~l~~~-p~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L   90 (251)
T 3m19_A           14 EGKKEVDCQGKSLDSV-PSGIP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGL   90 (251)
T ss_dssp             GGGTEEECTTCCCSSC-CSCCC--TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEEC
T ss_pred             CCCeEEecCCCCcccc-CCCCC--CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEEC
Confidence            4567899998887753 33333  68999999999998877788999999999999999998777777899999999999


Q ss_pred             CCCccccCCCcCCcCCCCCcEEEcCCCccCCcCCcccccCCCccEEEcCCccccccCCcCCCCCCCccEEeCCCCccCCc
Q 037302          291 GYNQLSSSIPPELMNCSQLQNLVLSHNTLSGIVPPEIGNLTHLRQLDLSHNFINGTIPSQLGYIPNISAVDLSKNNLSGV  370 (408)
Q Consensus       291 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~  370 (408)
                      ++|.++...+..+..+++|++|++++|++++..+..+..+++|++|++++|++++..+..+..+++|+.|++++|++.+.
T Consensus        91 ~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~  170 (251)
T 3m19_A           91 ANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSV  170 (251)
T ss_dssp             TTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCC
T ss_pred             CCCcccccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCCcCCcc
Confidence            99999987778889999999999999999977777789999999999999999977777899999999999999999998


Q ss_pred             CCcccc---CCCeEEccCCccCCC
Q 037302          371 VPASVR---IIPKLIVSENNLELE  391 (408)
Q Consensus       371 ~~~~~~---~l~~l~l~~n~~~~~  391 (408)
                      .+..+.   ++++|++++|++++.
T Consensus       171 ~~~~~~~l~~L~~L~l~~N~~~c~  194 (251)
T 3m19_A          171 PHGAFDRLGKLQTITLFGNQFDCS  194 (251)
T ss_dssp             CTTTTTTCTTCCEEECCSCCBCTT
T ss_pred             CHHHHhCCCCCCEEEeeCCceeCC
Confidence            886665   566999999999876

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}

Probab=99.84  E-value=9.2e-22  Score=179.49  Aligned_cols=256  Identities=21%  Similarity=0.187  Sum_probs=163.5

Q ss_pred             EEeCCCceecccCcccccCCCCCceeecCCccccccCC----CcCCCCC-CCCEEEcCCCeecccCcccccCC-----CC
Q 037302           71 ELDLSNNILNGSIPLEFGNLKDLDALRLRGNKLDGLIP----SSIGNLT-NLTHLDLSLNQLSGRLPQEVGNL-----KN  140 (408)
Q Consensus        71 ~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~----~~l~~l~-~L~~L~l~~~~~~~~~~~~~~~l-----~~  140 (408)
                      .+.++.+.+.+..|..+...++|++|++++|.+....+    ..+..++ +|++|++++|.+....+..+..+     ++
T Consensus         2 ~~~ls~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~   81 (362)
T 3goz_A            2 NYKLTLHPGSNPVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPAN   81 (362)
T ss_dssp             EEECCCCTTCCHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTT
T ss_pred             ccccccccchHHHHHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCC
Confidence            35677787776667766667779999999999987766    6677888 99999999999987666666654     99


Q ss_pred             CceEeccCCcccCcCchhhc----cC-CCCCEEEcCCCcCCCCCCcc----ccC-CCCCCEEEecCcccccccCcccccc
Q 037302          141 LLSLFLDNNNLTGPIPSTLY----HL-NQLSNLYLAYNNLVGPLPKE----VGN-MKNLDSLLLNRNSLTGPIPSTIGYL  210 (408)
Q Consensus       141 L~~L~l~~~~~~~~~~~~~~----~~-~~L~~L~l~~~~~~~~~~~~----~~~-~~~L~~L~l~~~~~~~~~~~~~~~~  210 (408)
                      |++|++++|.++......+.    .+ ++|++|++++|.+.......    +.. .++|++|++++|.+.+.....+.  
T Consensus        82 L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~--  159 (362)
T 3goz_A           82 VTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELI--  159 (362)
T ss_dssp             CCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHH--
T ss_pred             ccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHH--
Confidence            99999999998866555443    44 89999999999987554433    333 35888888888877643222111  


Q ss_pred             cccCeEEccCCcCCCCCCcccCCCC-CccEEEccCCcccccCCc----cccCC-CCCCEEeCCCCccccc----CCcccc
Q 037302          211 NLGGKLDLSHNRLDSPIPPTIGNLT-NLTSLDLSSNQLSGLLPR----EVGNL-KYLDSLSLDGNNLIGS----IPPTIG  280 (408)
Q Consensus       211 ~~L~~l~l~~~~~~~~~~~~l~~~~-~L~~L~l~~~~~~~~~~~----~~~~~-~~L~~L~l~~~~~~~~----~~~~~~  280 (408)
                                        ..+...+ +|++|++++|.+++....    .+..+ ++|++|++++|.+.+.    .+..+.
T Consensus       160 ------------------~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~  221 (362)
T 3goz_A          160 ------------------QILAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFS  221 (362)
T ss_dssp             ------------------HHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHH
T ss_pred             ------------------HHHhcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHh
Confidence                              0111111 455555555544433322    22233 3566666665555432    112222


Q ss_pred             C-CCCCcEEeCCCCccccCCC----cCCcCCCCCcEEEcCCCccCCcCC-------cccccCCCccEEEcCCcccccc
Q 037302          281 Y-LTNLTSLNLGYNQLSSSIP----PELMNCSQLQNLVLSHNTLSGIVP-------PEIGNLTHLRQLDLSHNFINGT  346 (408)
Q Consensus       281 ~-~~~L~~L~l~~~~~~~~~~----~~~~~~~~L~~L~l~~~~~~~~~~-------~~~~~~~~L~~L~l~~~~~~~~  346 (408)
                      . .++|++|++++|.+++...    ..+..+++|++|++++|.+.++..       ..+..+++|+.|++++|++.+.
T Consensus       222 ~~~~~L~~L~Ls~N~l~~~~~~~l~~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N~l~~~  299 (362)
T 3goz_A          222 SIPNHVVSLNLCLNCLHGPSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEIHPS  299 (362)
T ss_dssp             HSCTTCCEEECCSSCCCCCCHHHHHHTTTTTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTTCCEEEEECTTSCBCCGG
T ss_pred             cCCCCceEEECcCCCCCcHHHHHHHHHHhcCCCccEEEeccCCccccCHHHHHHHHHHhccCCceEEEecCCCcCCCc
Confidence            2 3466667776666654332    234556677777777776433222       2455667777788888777655

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=99.84  E-value=2.7e-20  Score=166.07  Aligned_cols=201  Identities=24%  Similarity=0.248  Sum_probs=100.9

Q ss_pred             CCCCCEEEcCCCcCCCCCCccc--cCCCCCCEEEecCcccccccC----cccccccccCeEEccCCcCCCCCCcccCCCC
Q 037302          162 LNQLSNLYLAYNNLVGPLPKEV--GNMKNLDSLLLNRNSLTGPIP----STIGYLNLGGKLDLSHNRLDSPIPPTIGNLT  235 (408)
Q Consensus       162 ~~~L~~L~l~~~~~~~~~~~~~--~~~~~L~~L~l~~~~~~~~~~----~~~~~~~~L~~l~l~~~~~~~~~~~~l~~~~  235 (408)
                      +++|++|++++|.+....+..+  ..+++|++|++++|.+.+..+    ..+..+++|++|++++|.+....+..+..++
T Consensus        90 ~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~  169 (310)
T 4glp_A           90 YSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHSPAFSCEQVRAFP  169 (310)
T ss_dssp             HSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSSCCCCTTSCCCCT
T ss_pred             cCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCcchhhHHHhccCC
Confidence            4557777777776665555555  666777777777776654222    2223456666666666666555555566666


Q ss_pred             CccEEEccCCccccc----CCccccCCCCCCEEeCCCCcccccCC--c-cccCCCCCcEEeCCCCccccCCCcCCcCC--
Q 037302          236 NLTSLDLSSNQLSGL----LPREVGNLKYLDSLSLDGNNLIGSIP--P-TIGYLTNLTSLNLGYNQLSSSIPPELMNC--  306 (408)
Q Consensus       236 ~L~~L~l~~~~~~~~----~~~~~~~~~~L~~L~l~~~~~~~~~~--~-~~~~~~~L~~L~l~~~~~~~~~~~~~~~~--  306 (408)
                      +|++|++++|.+...    ....+..+++|++|++++|.+.....  . .+..+++|++|++++|.+++..+..+..+  
T Consensus       170 ~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~  249 (310)
T 4glp_A          170 ALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMETPTGVCAALAAAGVQPHSLDLSHNSLRATVNPSAPRCMW  249 (310)
T ss_dssp             TCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCHHHHHHHHHHHTCCCSSEECTTSCCCCCCCSCCSSCCC
T ss_pred             CCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCchHHHHHHHHhcCCCCCEEECCCCCCCccchhhHHhccC
Confidence            666666666654321    11222345555555555555532111  0 12344555555555555554433333333  


Q ss_pred             -CCCcEEEcCCCccCCcCCcccccCCCccEEEcCCccccccCCcCCCCCCCccEEeCCCCcc
Q 037302          307 -SQLQNLVLSHNTLSGIVPPEIGNLTHLRQLDLSHNFINGTIPSQLGYIPNISAVDLSKNNL  367 (408)
Q Consensus       307 -~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l  367 (408)
                       ++|++|++++|+++ ..+..+.  ++|++|++++|++++. |. +..+++|+.|++++|++
T Consensus       250 ~~~L~~L~Ls~N~l~-~lp~~~~--~~L~~L~Ls~N~l~~~-~~-~~~l~~L~~L~L~~N~l  306 (310)
T 4glp_A          250 SSALNSLNLSFAGLE-QVPKGLP--AKLRVLDLSSNRLNRA-PQ-PDELPEVDNLTLDGNPF  306 (310)
T ss_dssp             CTTCCCEECCSSCCC-SCCSCCC--SCCSCEECCSCCCCSC-CC-TTSCCCCSCEECSSTTT
T ss_pred             cCcCCEEECCCCCCC-chhhhhc--CCCCEEECCCCcCCCC-ch-hhhCCCccEEECcCCCC
Confidence             34555555555444 2222221  3444555555544422 21 23344444444444444

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=99.83  E-value=1e-22  Score=187.59  Aligned_cols=258  Identities=19%  Similarity=0.209  Sum_probs=138.0

Q ss_pred             CceeecCCccccccCCCcCCCCCCCCEEEcCCCeecccCcc----cccCCCCCceEeccCCccc---CcCchh-------
Q 037302           93 LDALRLRGNKLDGLIPSSIGNLTNLTHLDLSLNQLSGRLPQ----EVGNLKNLLSLFLDNNNLT---GPIPST-------  158 (408)
Q Consensus        93 L~~L~l~~~~i~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~----~~~~l~~L~~L~l~~~~~~---~~~~~~-------  158 (408)
                      |+...+....+. ..+..+..+++|++|++++|.+....+.    .+..+++|++|+++++.+.   ...+..       
T Consensus        11 L~~~~l~~~~~~-~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~   89 (386)
T 2ca6_A           11 LKLDAITTEDEK-SVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQA   89 (386)
T ss_dssp             CEESSCCSHHHH-TTSHHHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHH
T ss_pred             cccCCCCHHHHH-HHHHHHhcCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHH
Confidence            333334333333 2334566677888888888877644332    3556777888888775432   222222       


Q ss_pred             hccCCCCCEEEcCCCcCCCC----CCccccCCCCCCEEEecCcccccccCcccccccccCeEEccCCcCCCCCCcccCCC
Q 037302          159 LYHLNQLSNLYLAYNNLVGP----LPKEVGNMKNLDSLLLNRNSLTGPIPSTIGYLNLGGKLDLSHNRLDSPIPPTIGNL  234 (408)
Q Consensus       159 ~~~~~~L~~L~l~~~~~~~~----~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~l~~~  234 (408)
                      +..+++|++|++++|.+...    ++..+..+++|++|++++|.+.+.....+...                    +..+
T Consensus        90 l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~--------------------l~~l  149 (386)
T 2ca6_A           90 LLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARA--------------------LQEL  149 (386)
T ss_dssp             HTTCTTCCEEECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHH--------------------HHHH
T ss_pred             HhhCCcccEEECCCCcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHH--------------------HHHH
Confidence            24566777777777666542    33345556666666666665542211111111                    1111


Q ss_pred             ---------CCccEEEccCCccccc-CC---ccccCCCCCCEEeCCCCccccc-----CCccccCCCCCcEEeCCCCccc
Q 037302          235 ---------TNLTSLDLSSNQLSGL-LP---REVGNLKYLDSLSLDGNNLIGS-----IPPTIGYLTNLTSLNLGYNQLS  296 (408)
Q Consensus       235 ---------~~L~~L~l~~~~~~~~-~~---~~~~~~~~L~~L~l~~~~~~~~-----~~~~~~~~~~L~~L~l~~~~~~  296 (408)
                               ++|++|++++|.++.. .+   ..+..+++|+.|++++|.+...     .+..+..+++|++|++++|.++
T Consensus       150 ~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~  229 (386)
T 2ca6_A          150 AVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFT  229 (386)
T ss_dssp             HHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCH
T ss_pred             hhhhhcccCCCCcEEECCCCCCCcHHHHHHHHHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCC
Confidence                     4555555555554421 11   2344455666666666655421     1124555666666666666664


Q ss_pred             ----cCCCcCCcCCCCCcEEEcCCCccCCc----CCcccc--cCCCccEEEcCCccccc----cCCcCC-CCCCCccEEe
Q 037302          297 ----SSIPPELMNCSQLQNLVLSHNTLSGI----VPPEIG--NLTHLRQLDLSHNFING----TIPSQL-GYIPNISAVD  361 (408)
Q Consensus       297 ----~~~~~~~~~~~~L~~L~l~~~~~~~~----~~~~~~--~~~~L~~L~l~~~~~~~----~~~~~~-~~~~~L~~L~  361 (408)
                          ...+..+..+++|++|++++|.+.+.    .+..+.  .+++|+.|++++|.+++    .+|..+ .++++|+.|+
T Consensus       230 ~~g~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~  309 (386)
T 2ca6_A          230 HLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLE  309 (386)
T ss_dssp             HHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEE
T ss_pred             cHHHHHHHHHHccCCCcCEEECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEE
Confidence                23334455666666666666665533    223332  25667777777776665    244444 3466677777


Q ss_pred             CCCCccCCcC
Q 037302          362 LSKNNLSGVV  371 (408)
Q Consensus       362 l~~~~l~~~~  371 (408)
                      +++|++.+..
T Consensus       310 l~~N~l~~~~  319 (386)
T 2ca6_A          310 LNGNRFSEED  319 (386)
T ss_dssp             CTTSBSCTTS
T ss_pred             ccCCcCCcch
Confidence            7777666544

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=99.83  E-value=1.3e-19  Score=151.94  Aligned_cols=180  Identities=26%  Similarity=0.235  Sum_probs=137.2

Q ss_pred             eEEccCCcCCCCCCcccCCCCCccEEEccCCcccccCCccccCCCCCCEEeCCCCcccccCCccccCCCCCcEEeCCCCc
Q 037302          215 KLDLSHNRLDSPIPPTIGNLTNLTSLDLSSNQLSGLLPREVGNLKYLDSLSLDGNNLIGSIPPTIGYLTNLTSLNLGYNQ  294 (408)
Q Consensus       215 ~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~  294 (408)
                      .++.+++.+... +..+  .++|++|+++++.+.......+..+++|++|+++++.+.......+..+++|++|++++|.
T Consensus        11 ~v~c~~~~l~~~-p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~   87 (208)
T 2o6s_A           11 TVECYSQGRTSV-PTGI--PAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQ   87 (208)
T ss_dssp             EEECCSSCCSSC-CSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred             EEEecCCCccCC-CCCC--CCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCc
Confidence            455555544432 2222  3578888888887776666667778888888888888776656667788888888888888


Q ss_pred             cccCCCcCCcCCCCCcEEEcCCCccCCcCCcccccCCCccEEEcCCccccccCCcCCCCCCCccEEeCCCCccCCcCCcc
Q 037302          295 LSSSIPPELMNCSQLQNLVLSHNTLSGIVPPEIGNLTHLRQLDLSHNFINGTIPSQLGYIPNISAVDLSKNNLSGVVPAS  374 (408)
Q Consensus       295 ~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~  374 (408)
                      ++...+..+..+++|++|++++|.+.+..+..+..+++|++|++++|++++..+..+..+++|+.|++++|++.+..   
T Consensus        88 l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~---  164 (208)
T 2o6s_A           88 LQSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDCTC---  164 (208)
T ss_dssp             CCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCCCT---
T ss_pred             CCccCHhHhcCccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCccEEEecCCCeecCC---
Confidence            88666666778888888888888888776667788888999999988888666666788888999999998887543   


Q ss_pred             ccCCCeEEccCCccCCCCCCCcCCCCC
Q 037302          375 VRIIPKLIVSENNLELENSTSSENAPP  401 (408)
Q Consensus       375 ~~~l~~l~l~~n~~~~~~~~~~~~~~~  401 (408)
                       .+++.|+++.|.++|.+|+.+.+++.
T Consensus       165 -~~l~~L~~~~n~~~g~ip~~~~~l~~  190 (208)
T 2o6s_A          165 -PGIRYLSEWINKHSGVVRNSAGSVAP  190 (208)
T ss_dssp             -TTTHHHHHHHHHCTTTBBCTTSSBCT
T ss_pred             -CCHHHHHHHHHhCCceeeccCccccC
Confidence             36778888889998899888887765

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=99.83  E-value=3.1e-20  Score=165.65  Aligned_cols=226  Identities=20%  Similarity=0.201  Sum_probs=168.5

Q ss_pred             CCCCEEEcCCCcCCCCCC---ccccCCCCCCEEEecCcccccccCccc--ccccccCeEEccCCcCCCCCC----cccCC
Q 037302          163 NQLSNLYLAYNNLVGPLP---KEVGNMKNLDSLLLNRNSLTGPIPSTI--GYLNLGGKLDLSHNRLDSPIP----PTIGN  233 (408)
Q Consensus       163 ~~L~~L~l~~~~~~~~~~---~~~~~~~~L~~L~l~~~~~~~~~~~~~--~~~~~L~~l~l~~~~~~~~~~----~~l~~  233 (408)
                      ..++.+.+..+.+.....   ..+..+++|++|++++|.+.+..+..+  ..+++|+.|++++|.+....+    ..+..
T Consensus        64 ~~l~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~  143 (310)
T 4glp_A           64 LRVRRLTVGAAQVPAQLLVGALRVLAYSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWL  143 (310)
T ss_dssp             CCCCEEEECSCCCBHHHHHHHHHHHHHSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTB
T ss_pred             cceeEEEEeCCcCCHHHHHHHHHhcccCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhh
Confidence            446666666655432100   012234669999999998887766666  788999999999998875433    23346


Q ss_pred             CCCccEEEccCCcccccCCccccCCCCCCEEeCCCCccccc----CCccccCCCCCcEEeCCCCccccCCCc---CCcCC
Q 037302          234 LTNLTSLDLSSNQLSGLLPREVGNLKYLDSLSLDGNNLIGS----IPPTIGYLTNLTSLNLGYNQLSSSIPP---ELMNC  306 (408)
Q Consensus       234 ~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~----~~~~~~~~~~L~~L~l~~~~~~~~~~~---~~~~~  306 (408)
                      +++|++|++++|.+....+..++.+++|++|++++|.+...    ....+..+++|++|++++|.++.....   .+..+
T Consensus       144 ~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~~l  223 (310)
T 4glp_A          144 KPGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMETPTGVCAALAAAG  223 (310)
T ss_dssp             CSCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCHHHHHHHHHHHT
T ss_pred             ccCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCchHHHHHHHHhcC
Confidence            78999999999998877777888899999999999986432    223346788999999999988632111   24567


Q ss_pred             CCCcEEEcCCCccCCcCCcccccC---CCccEEEcCCccccccCCcCCCCCCCccEEeCCCCccCCc-CCccccCCCeEE
Q 037302          307 SQLQNLVLSHNTLSGIVPPEIGNL---THLRQLDLSHNFINGTIPSQLGYIPNISAVDLSKNNLSGV-VPASVRIIPKLI  382 (408)
Q Consensus       307 ~~L~~L~l~~~~~~~~~~~~~~~~---~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~-~~~~~~~l~~l~  382 (408)
                      ++|++|++++|.+.+..+..+..+   ++|++|++++|+++ .+|..+.  ++|+.|++++|+++++ .+..+.++++|+
T Consensus       224 ~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~-~lp~~~~--~~L~~L~Ls~N~l~~~~~~~~l~~L~~L~  300 (310)
T 4glp_A          224 VQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLE-QVPKGLP--AKLRVLDLSSNRLNRAPQPDELPEVDNLT  300 (310)
T ss_dssp             CCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCCC-SCCSCCC--SCCSCEECCSCCCCSCCCTTSCCCCSCEE
T ss_pred             CCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCCCCC-chhhhhc--CCCCEEECCCCcCCCCchhhhCCCccEEE
Confidence            899999999999887766666655   69999999999998 5566553  7999999999999885 456677888999


Q ss_pred             ccCCccCCC
Q 037302          383 VSENNLELE  391 (408)
Q Consensus       383 l~~n~~~~~  391 (408)
                      +++|+++.+
T Consensus       301 L~~N~l~~~  309 (310)
T 4glp_A          301 LDGNPFLVP  309 (310)
T ss_dssp             CSSTTTSCC
T ss_pred             CcCCCCCCC
Confidence            999998754

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=99.83  E-value=1.8e-22  Score=185.94  Aligned_cols=186  Identities=18%  Similarity=0.184  Sum_probs=142.6

Q ss_pred             ccccccCeEEccCCcCCCC----CCcccCCCCCccEEEccCCcccccCCccc----cCC---------CCCCEEeCCCCc
Q 037302          208 GYLNLGGKLDLSHNRLDSP----IPPTIGNLTNLTSLDLSSNQLSGLLPREV----GNL---------KYLDSLSLDGNN  270 (408)
Q Consensus       208 ~~~~~L~~l~l~~~~~~~~----~~~~l~~~~~L~~L~l~~~~~~~~~~~~~----~~~---------~~L~~L~l~~~~  270 (408)
                      ..+++|++|++++|.+...    .+..+..+++|++|++++|.++......+    ..+         ++|+.|++++|.
T Consensus        91 ~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~  170 (386)
T 2ca6_A           91 LKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNR  170 (386)
T ss_dssp             TTCTTCCEEECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSC
T ss_pred             hhCCcccEEECCCCcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCC
Confidence            5567777777777766652    34456678889999999988764433333    333         899999999999


Q ss_pred             cccc-CC---ccccCCCCCcEEeCCCCccccC-----CCcCCcCCCCCcEEEcCCCccC----CcCCcccccCCCccEEE
Q 037302          271 LIGS-IP---PTIGYLTNLTSLNLGYNQLSSS-----IPPELMNCSQLQNLVLSHNTLS----GIVPPEIGNLTHLRQLD  337 (408)
Q Consensus       271 ~~~~-~~---~~~~~~~~L~~L~l~~~~~~~~-----~~~~~~~~~~L~~L~l~~~~~~----~~~~~~~~~~~~L~~L~  337 (408)
                      +... .+   ..+..+++|++|++++|.++..     .+..+..+++|++|++++|.++    ...+..+..+++|++|+
T Consensus       171 l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~  250 (386)
T 2ca6_A          171 LENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELG  250 (386)
T ss_dssp             CTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEE
T ss_pred             CCcHHHHHHHHHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEE
Confidence            8633 22   3566889999999999988732     2336778999999999999985    35566788899999999


Q ss_pred             cCCcccccc----CCcCC--CCCCCccEEeCCCCccCC----cCCcc----ccCCCeEEccCCccCCCCC
Q 037302          338 LSHNFINGT----IPSQL--GYIPNISAVDLSKNNLSG----VVPAS----VRIIPKLIVSENNLELENS  393 (408)
Q Consensus       338 l~~~~~~~~----~~~~~--~~~~~L~~L~l~~~~l~~----~~~~~----~~~l~~l~l~~n~~~~~~~  393 (408)
                      +++|.+++.    ++..+  ..+++|+.|++++|++..    ..|..    +.++++|++++|++++..|
T Consensus       251 L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~~~~~  320 (386)
T 2ca6_A          251 LNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEEDD  320 (386)
T ss_dssp             CTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCTTSH
T ss_pred             CCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCcCCcchh
Confidence            999999865    45555  348999999999999998    35543    4788899999999987764

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=99.83  E-value=5.8e-20  Score=157.52  Aligned_cols=197  Identities=18%  Similarity=0.207  Sum_probs=111.0

Q ss_pred             CCceEeccCCcccCcCchhhccCCCCCEEEcCCCc-CCCCCCccccCCCCCCEEEecCcccccccCcccccccccCeEEc
Q 037302          140 NLLSLFLDNNNLTGPIPSTLYHLNQLSNLYLAYNN-LVGPLPKEVGNMKNLDSLLLNRNSLTGPIPSTIGYLNLGGKLDL  218 (408)
Q Consensus       140 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~-~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l  218 (408)
                      ++++|+++++.++......+..+++|++|++++|. +....+..|..+++|++|+++++                     
T Consensus        32 ~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~---------------------   90 (239)
T 2xwt_C           32 STQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNT---------------------   90 (239)
T ss_dssp             TCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEE---------------------
T ss_pred             cccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCC---------------------
Confidence            45555555555554443444455555555555553 33333334444455555555440                     


Q ss_pred             cCCcCCCCCCcccCCCCCccEEEccCCcccccCCccccCCCCCC---EEeCCCC-cccccCCccccCCCCCc-EEeCCCC
Q 037302          219 SHNRLDSPIPPTIGNLTNLTSLDLSSNQLSGLLPREVGNLKYLD---SLSLDGN-NLIGSIPPTIGYLTNLT-SLNLGYN  293 (408)
Q Consensus       219 ~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~---~L~l~~~-~~~~~~~~~~~~~~~L~-~L~l~~~  293 (408)
                        +.+....+..+..+++|++|++++|.+.. .+. +..+++|+   .|++++| .+.......+..+++|+ +|++++|
T Consensus        91 --n~l~~i~~~~f~~l~~L~~L~l~~n~l~~-lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n  166 (239)
T 2xwt_C           91 --RNLTYIDPDALKELPLLKFLGIFNTGLKM-FPD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNN  166 (239)
T ss_dssp             --TTCCEECTTSEECCTTCCEEEEEEECCCS-CCC-CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSC
T ss_pred             --CCeeEcCHHHhCCCCCCCEEeCCCCCCcc-ccc-cccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCC
Confidence              44443333444455555555555555543 222 44555555   6666666 55544445566667777 7777777


Q ss_pred             ccccCCCcCCcCCCCCcEEEcCCCc-cCCcCCcccccC-CCccEEEcCCccccccCCcCCCCCCCccEEeCCCC
Q 037302          294 QLSSSIPPELMNCSQLQNLVLSHNT-LSGIVPPEIGNL-THLRQLDLSHNFINGTIPSQLGYIPNISAVDLSKN  365 (408)
Q Consensus       294 ~~~~~~~~~~~~~~~L~~L~l~~~~-~~~~~~~~~~~~-~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~  365 (408)
                      .++......+.. ++|++|++++|+ ++.+.+..|..+ ++|+.|++++|+++.. |..  .+++|+.|.++++
T Consensus       167 ~l~~i~~~~~~~-~~L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~~l-~~~--~~~~L~~L~l~~~  236 (239)
T 2xwt_C          167 GFTSVQGYAFNG-TKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVTAL-PSK--GLEHLKELIARNT  236 (239)
T ss_dssp             CCCEECTTTTTT-CEEEEEECTTCTTCCEECTTTTTTCSBCCSEEECTTCCCCCC-CCT--TCTTCSEEECTTC
T ss_pred             CCcccCHhhcCC-CCCCEEEcCCCCCcccCCHHHhhccccCCcEEECCCCccccC-Chh--HhccCceeeccCc
Confidence            766444444444 677777777774 665556667777 7777777777777743 322  4567777777765

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=99.83  E-value=7.7e-20  Score=162.73  Aligned_cols=197  Identities=29%  Similarity=0.380  Sum_probs=165.3

Q ss_pred             hccCCCCCEEEcCCCcCCCCCCccccCCCCCCEEEecCcccccccCcccccccccCeEEccCCcCCCCCCcccCCCCCcc
Q 037302          159 LYHLNQLSNLYLAYNNLVGPLPKEVGNMKNLDSLLLNRNSLTGPIPSTIGYLNLGGKLDLSHNRLDSPIPPTIGNLTNLT  238 (408)
Q Consensus       159 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~l~~~~~L~  238 (408)
                      ...+++|+.|+++++.+... + .+..+++|+.|++++|.+.+..+  +..+++|+.|++++|.+...  ..+..+++|+
T Consensus        37 ~~~l~~L~~L~l~~~~i~~l-~-~~~~l~~L~~L~L~~n~i~~~~~--~~~l~~L~~L~L~~n~l~~~--~~~~~l~~L~  110 (308)
T 1h6u_A           37 QADLDGITTLSAFGTGVTTI-E-GVQYLNNLIGLELKDNQITDLAP--LKNLTKITELELSGNPLKNV--SAIAGLQSIK  110 (308)
T ss_dssp             HHHHHTCCEEECTTSCCCCC-T-TGGGCTTCCEEECCSSCCCCCGG--GTTCCSCCEEECCSCCCSCC--GGGTTCTTCC
T ss_pred             HHHcCCcCEEEeeCCCccCc-h-hhhccCCCCEEEccCCcCCCChh--HccCCCCCEEEccCCcCCCc--hhhcCCCCCC
Confidence            45688999999999988753 3 57889999999999999875443  88899999999999998764  3688899999


Q ss_pred             EEEccCCcccccCCccccCCCCCCEEeCCCCcccccCCccccCCCCCcEEeCCCCccccCCCcCCcCCCCCcEEEcCCCc
Q 037302          239 SLDLSSNQLSGLLPREVGNLKYLDSLSLDGNNLIGSIPPTIGYLTNLTSLNLGYNQLSSSIPPELMNCSQLQNLVLSHNT  318 (408)
Q Consensus       239 ~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~  318 (408)
                      +|++++|.+.+..  .+..+++|+.|++++|.+.....  +..+++|++|++++|.+++..+  +..+++|+.|++++|.
T Consensus       111 ~L~l~~n~l~~~~--~l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~  184 (308)
T 1h6u_A          111 TLDLTSTQITDVT--PLAGLSNLQVLYLDLNQITNISP--LAGLTNLQYLSIGNAQVSDLTP--LANLSKLTTLKADDNK  184 (308)
T ss_dssp             EEECTTSCCCCCG--GGTTCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSC
T ss_pred             EEECCCCCCCCch--hhcCCCCCCEEECCCCccCcCcc--ccCCCCccEEEccCCcCCCChh--hcCCCCCCEEECCCCc
Confidence            9999999887532  37889999999999998875433  7889999999999999985433  7889999999999999


Q ss_pred             cCCcCCcccccCCCccEEEcCCccccccCCcCCCCCCCccEEeCCCCccCCcC
Q 037302          319 LSGIVPPEIGNLTHLRQLDLSHNFINGTIPSQLGYIPNISAVDLSKNNLSGVV  371 (408)
Q Consensus       319 ~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~  371 (408)
                      +.+..  .+..+++|++|++++|++++..+  +..+++|+.|++++|++.+..
T Consensus       185 l~~~~--~l~~l~~L~~L~L~~N~l~~~~~--l~~l~~L~~L~l~~N~i~~~~  233 (308)
T 1h6u_A          185 ISDIS--PLASLPNLIEVHLKNNQISDVSP--LANTSNLFIVTLTNQTITNQP  233 (308)
T ss_dssp             CCCCG--GGGGCTTCCEEECTTSCCCBCGG--GTTCTTCCEEEEEEEEEECCC
T ss_pred             cCcCh--hhcCCCCCCEEEccCCccCcccc--ccCCCCCCEEEccCCeeecCC
Confidence            98553  37889999999999999986553  788999999999999998643

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=99.81  E-value=3.7e-19  Score=149.12  Aligned_cols=179  Identities=28%  Similarity=0.209  Sum_probs=138.2

Q ss_pred             ccccCeEEccCCcCCCCCCcccCCCCCccEEEccCCcccccCCccccCCCCCCEEeCCCCcccccCCccccCCCCCcEEe
Q 037302          210 LNLGGKLDLSHNRLDSPIPPTIGNLTNLTSLDLSSNQLSGLLPREVGNLKYLDSLSLDGNNLIGSIPPTIGYLTNLTSLN  289 (408)
Q Consensus       210 ~~~L~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~  289 (408)
                      .+.+++|+++++.+....+..+..+++|++|++++|.+.......+..+++|++|++++|.+.......+..+++|++|+
T Consensus        27 ~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~  106 (208)
T 2o6s_A           27 PAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELA  106 (208)
T ss_dssp             CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred             CCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCcCCccCHhHhcCccCCCEEE
Confidence            34677777777777665556667778888888888877766566677788888888888887766666677888888999


Q ss_pred             CCCCccccCCCcCCcCCCCCcEEEcCCCccCCcCCcccccCCCccEEEcCCccccccCCcCCCCCCCccEEeCCCCccCC
Q 037302          290 LGYNQLSSSIPPELMNCSQLQNLVLSHNTLSGIVPPEIGNLTHLRQLDLSHNFINGTIPSQLGYIPNISAVDLSKNNLSG  369 (408)
Q Consensus       290 l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~  369 (408)
                      +++|.++...+..+..+++|++|++++|.+++.....+..+++|+.|++++|++.       ..+++|+.|++..|++.+
T Consensus       107 L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~-------~~~~~l~~L~~~~n~~~g  179 (208)
T 2o6s_A          107 LNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWD-------CTCPGIRYLSEWINKHSG  179 (208)
T ss_dssp             CCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBC-------CCTTTTHHHHHHHHHCTT
T ss_pred             cCCCcCcccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCccEEEecCCCee-------cCCCCHHHHHHHHHhCCc
Confidence            9888888666666788889999999999888776667888889999999999665       356788999999999999


Q ss_pred             cCCccccCCCeEEccCCccCCCCCCCc
Q 037302          370 VVPASVRIIPKLIVSENNLELENSTSS  396 (408)
Q Consensus       370 ~~~~~~~~l~~l~l~~n~~~~~~~~~~  396 (408)
                      .+|..++.+.. ++..+...+..+.++
T Consensus       180 ~ip~~~~~l~~-~~~~C~~~~~~~~~~  205 (208)
T 2o6s_A          180 VVRNSAGSVAP-DSAKCSGSGKPVRSI  205 (208)
T ss_dssp             TBBCTTSSBCT-TCSBBTTTCCBGGGC
T ss_pred             eeeccCccccC-CccccccCCCcceee
Confidence            88888887753 555566666666665

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*

Probab=99.77  E-value=1.5e-17  Score=150.74  Aligned_cols=238  Identities=18%  Similarity=0.107  Sum_probs=133.9

Q ss_pred             ceEeccCCcccCcCchhhccCCCCCEEEcCCCcCCCCCCccccCCCCCCEEEecCcccccc-cCcccccccccCe-EEcc
Q 037302          142 LSLFLDNNNLTGPIPSTLYHLNQLSNLYLAYNNLVGPLPKEVGNMKNLDSLLLNRNSLTGP-IPSTIGYLNLGGK-LDLS  219 (408)
Q Consensus       142 ~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~-~~~~~~~~~~L~~-l~l~  219 (408)
                      ++++.+++.++ .++..+  .+++++|++++|.+......+|..+++|+.|++++|.+.+. ....|..++.+.. +.+.
T Consensus        12 ~~v~C~~~~Lt-~iP~~l--~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~   88 (350)
T 4ay9_X           12 RVFLCQESKVT-EIPSDL--PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEK   88 (350)
T ss_dssp             TEEEEESTTCC-SCCTTC--CTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEE
T ss_pred             CEEEecCCCCC-ccCcCc--CCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhccc
Confidence            45566666665 334333  25677788877777655555677777788888777776443 2345566666554 3344


Q ss_pred             CCcCCCCCCcccCCCCCccEEEccCCcccccCCccccCCCCCCEEeCCCC-cccccCCccccCC-CCCcEEeCCCCcccc
Q 037302          220 HNRLDSPIPPTIGNLTNLTSLDLSSNQLSGLLPREVGNLKYLDSLSLDGN-NLIGSIPPTIGYL-TNLTSLNLGYNQLSS  297 (408)
Q Consensus       220 ~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~-~~~~~~~~~~~~~-~~L~~L~l~~~~~~~  297 (408)
                      ++++....+..+..+++|++|++++|.+.......+....++..+++.++ .+.......+... ..++.|++++|.++.
T Consensus        89 ~N~l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~~  168 (350)
T 4ay9_X           89 ANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQE  168 (350)
T ss_dssp             ETTCCEECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCCE
T ss_pred             CCcccccCchhhhhccccccccccccccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhccccccccC
Confidence            56666555666677777777777777666544444445556666666443 3333333333333 346666777766664


Q ss_pred             CCCcCCcCCCCCcEEEcCC-CccCCcCCcccccCCCccEEEcCCccccccCCcCCCCCCCccEEeCCCCccCCcCC--cc
Q 037302          298 SIPPELMNCSQLQNLVLSH-NTLSGIVPPEIGNLTHLRQLDLSHNFINGTIPSQLGYIPNISAVDLSKNNLSGVVP--AS  374 (408)
Q Consensus       298 ~~~~~~~~~~~L~~L~l~~-~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~--~~  374 (408)
                      .....+ ...+|+++.+.+ |.++.+...+|..+++|++|++++|+++...+..+   .+|+.|.+.++.-....|  +.
T Consensus       169 i~~~~f-~~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~l~~lp~~~~---~~L~~L~~l~~~~l~~lP~l~~  244 (350)
T 4ay9_X          169 IHNSAF-NGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSYGL---ENLKKLRARSTYNLKKLPTLEK  244 (350)
T ss_dssp             ECTTSS-TTEEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTSCCCCCCSSSC---TTCCEEECTTCTTCCCCCCTTT
T ss_pred             CChhhc-cccchhHHhhccCCcccCCCHHHhccCcccchhhcCCCCcCccChhhh---ccchHhhhccCCCcCcCCCchh
Confidence            433333 335566666654 44554444556666666777777666663333233   344444444443222233  34


Q ss_pred             ccCCCeEEccCC
Q 037302          375 VRIIPKLIVSEN  386 (408)
Q Consensus       375 ~~~l~~l~l~~n  386 (408)
                      +.+|+.+++.++
T Consensus       245 l~~L~~l~l~~~  256 (350)
T 4ay9_X          245 LVALMEASLTYP  256 (350)
T ss_dssp             CCSCCEEECSCH
T ss_pred             CcChhhCcCCCC
Confidence            555556666543

>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}

Probab=99.76  E-value=5.7e-17  Score=149.42  Aligned_cols=310  Identities=11%  Similarity=0.020  Sum_probs=168.8

Q ss_pred             hhhccCCCCcEEeCCCCcCCCCCcccccCCCCCcEEeCCCceecccCcccccCCCCCceeecCCccccccCCCcCCCCCC
Q 037302           37 SEIGALSKLEELALPYNSLTGTIPAEIGSLRNLVELDLSNNILNGSIPLEFGNLKDLDALRLRGNKLDGLIPSSIGNLTN  116 (408)
Q Consensus        37 ~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~l~~l~~  116 (408)
                      .+|..|.+|+++.+..+ ++.+...+|.+|.+|+.+++..+ +..+...+|.++..|+.+.+..+ +..+...+|.++..
T Consensus        65 ~AF~~c~~L~~i~lp~~-i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~c~~L~~i~~p~~-l~~i~~~aF~~~~~  141 (394)
T 4fs7_A           65 AAFQGCRKVTEIKIPST-VREIGEFAFENCSKLEIINIPDS-VKMIGRCTFSGCYALKSILLPLM-LKSIGVEAFKGCDF  141 (394)
T ss_dssp             TTTTTCTTEEEEECCTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCCCCCCTT-CCEECTTTTTTCCC
T ss_pred             HHhhCCCCceEEEeCCC-ccCcchhHhhCCCCCcEEEeCCC-ceEccchhhcccccchhhcccCc-eeeecceeeecccc
Confidence            45667777777777643 44455666777777777777654 33344556667777777666544 33345555655544


Q ss_pred             CCEEEcCCCeecccCcccccCCCCCceEeccCCcccCcCchhhccCCCCCEEEcCCCcCCCCCCccccCCCCCCEEEecC
Q 037302          117 LTHLDLSLNQLSGRLPQEVGNLKNLLSLFLDNNNLTGPIPSTLYHLNQLSNLYLAYNNLVGPLPKEVGNMKNLDSLLLNR  196 (408)
Q Consensus       117 L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~  196 (408)
                      ++.........  ....+|..+++|+.+.+..+. ..+....|..+++|+.+.+..+ +......+|..+..|+.+.+..
T Consensus       142 ~~~~~~~~~~~--i~~~aF~~c~~L~~i~l~~~~-~~I~~~~F~~c~~L~~i~l~~~-~~~I~~~~F~~~~~L~~i~~~~  217 (394)
T 4fs7_A          142 KEITIPEGVTV--IGDEAFATCESLEYVSLPDSM-ETLHNGLFSGCGKLKSIKLPRN-LKIIRDYCFAECILLENMEFPN  217 (394)
T ss_dssp             SEEECCTTCCE--ECTTTTTTCTTCCEEECCTTC-CEECTTTTTTCTTCCBCCCCTT-CCEECTTTTTTCTTCCBCCCCT
T ss_pred             cccccCccccc--cchhhhcccCCCcEEecCCcc-ceeccccccCCCCceEEEcCCC-ceEeCchhhccccccceeecCC
Confidence            33332222211  334566677777777776543 2244556666777777766544 2223334566666666665544


Q ss_pred             cccccccCcccccccccCeEEccCCcCCCCCCcccCCCCCccEEEccCCcccccCCccccCCCCCCEEeCCCCcccccCC
Q 037302          197 NSLTGPIPSTIGYLNLGGKLDLSHNRLDSPIPPTIGNLTNLTSLDLSSNQLSGLLPREVGNLKYLDSLSLDGNNLIGSIP  276 (408)
Q Consensus       197 ~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~  276 (408)
                      +...  ....+.....++.+.+... ...+....+..+..++.+.+..+... .....|..+..++.+......+   ..
T Consensus       218 ~~~~--i~~~~~~~~~l~~i~ip~~-~~~i~~~~f~~~~~l~~~~~~~~~~~-i~~~~F~~~~~l~~~~~~~~~i---~~  290 (394)
T 4fs7_A          218 SLYY--LGDFALSKTGVKNIIIPDS-FTELGKSVFYGCTDLESISIQNNKLR-IGGSLFYNCSGLKKVIYGSVIV---PE  290 (394)
T ss_dssp             TCCE--ECTTTTTTCCCCEEEECTT-CCEECSSTTTTCSSCCEEEECCTTCE-ECSCTTTTCTTCCEEEECSSEE---CT
T ss_pred             CceE--eehhhcccCCCceEEECCC-ceecccccccccccceeEEcCCCcce-eeccccccccccceeccCceee---cc
Confidence            3221  1222233445666655432 22233345556666666666554322 3444555566666665544332   22


Q ss_pred             ccccCCCCCcEEeCCCCccccCCCcCCcCCCCCcEEEcCCCccCCcCCcccccCCCccEEEcCCccccccCCcCCCCCCC
Q 037302          277 PTIGYLTNLTSLNLGYNQLSSSIPPELMNCSQLQNLVLSHNTLSGIVPPEIGNLTHLRQLDLSHNFINGTIPSQLGYIPN  356 (408)
Q Consensus       277 ~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~  356 (408)
                      ..+..+.+|+.+.+.++ +......+|.+|.+|+.+.+..+ ++.+...+|.+|++|+.+.+..+ ++.....+|.+|.+
T Consensus       291 ~~F~~~~~L~~i~l~~~-i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~  367 (394)
T 4fs7_A          291 KTFYGCSSLTEVKLLDS-VKFIGEEAFESCTSLVSIDLPYL-VEEIGKRSFRGCTSLSNINFPLS-LRKIGANAFQGCIN  367 (394)
T ss_dssp             TTTTTCTTCCEEEECTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTBTTCTT
T ss_pred             ccccccccccccccccc-cceechhhhcCCCCCCEEEeCCc-ccEEhHHhccCCCCCCEEEECcc-ccEehHHHhhCCCC
Confidence            34555666666666543 33344555666666666666543 44455556666666666666555 44445556666666


Q ss_pred             ccEEeCC
Q 037302          357 ISAVDLS  363 (408)
Q Consensus       357 L~~L~l~  363 (408)
                      |+.+++.
T Consensus       368 L~~i~lp  374 (394)
T 4fs7_A          368 LKKVELP  374 (394)
T ss_dssp             CCEEEEE
T ss_pred             CCEEEEC
Confidence            6666654

>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}

Probab=99.75  E-value=3.6e-16  Score=144.12  Aligned_cols=337  Identities=10%  Similarity=0.103  Sum_probs=176.7

Q ss_pred             CcccccccccCCCC-CCcEEEcCCCccccccchhhccCCCCcEEeCCCCc---CCCCCcccccCCCCCcEEeCCCceecc
Q 037302            6 NAAELSQLNFTCFP-NLESIIIPYTLLSGRIPSEIGALSKLEELALPYNS---LTGTIPAEIGSLRNLVELDLSNNILNG   81 (408)
Q Consensus         6 ~~~~~~~~~~~~~~-~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~---~~~~~~~~~~~~~~L~~L~l~~~~~~~   81 (408)
                      .|+.|+..||.++. .|+.+.+... +...-..+|..|.+|+.+.+..+.   ++.+...+|..+..|+.+.+..+ +..
T Consensus        50 ~Vt~Ig~~aF~~~~~~L~sI~iP~s-vt~Ig~~AF~~C~~L~~i~~~~n~p~~l~~Ig~~aF~~c~~L~~i~~~~~-~~~  127 (394)
T 4gt6_A           50 PVSKIGDRVFCNYKYVLTSVQIPDT-VTEIGSNAFYNCTSLKRVTIQDNKPSCVKKIGRQAFMFCSELTDIPILDS-VTE  127 (394)
T ss_dssp             EEEEECTTTTTTCCSCCCEEEECTT-CCEECTTTTTTCTTCCEEEEGGGCCCCCCEECTTTTTTCTTCCBCGGGTT-CSE
T ss_pred             eeeEcCHhhccCCCCcCEEEEECCC-eeEEhHHHhhCCccCceEeecCCCCCeeeEechhhchhcccceeeccCCc-cce
Confidence            47788888888875 5888888643 333334567788888888776542   44455566777777777666554 222


Q ss_pred             cCcccccCCCCCceeecCCccccccCCCcCCCCCCCCEEEcCCCeecccCcccccCCCCCceEeccCCcccCcCchhhcc
Q 037302           82 SIPLEFGNLKDLDALRLRGNKLDGLIPSSIGNLTNLTHLDLSLNQLSGRLPQEVGNLKNLLSLFLDNNNLTGPIPSTLYH  161 (408)
Q Consensus        82 ~~~~~~~~l~~L~~L~l~~~~i~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~  161 (408)
                      ....+|..+.+|+.+.+... +..+....|..+..|+.+.+..+ +..+...+|.. ..|+.+.+..... ......+..
T Consensus       128 I~~~aF~~c~~L~~i~lp~~-~~~I~~~~F~~c~~L~~i~~~~~-~~~I~~~aF~~-~~l~~i~ip~~~~-~i~~~af~~  203 (394)
T 4gt6_A          128 IDSEAFHHCEELDTVTIPEG-VTSVADGMFSYCYSLHTVTLPDS-VTAIEERAFTG-TALTQIHIPAKVT-RIGTNAFSE  203 (394)
T ss_dssp             ECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTT-CCCSEEEECTTCC-EECTTTTTT
T ss_pred             ehhhhhhhhcccccccccce-eeeecccceecccccccccccce-eeEeccccccc-cceeEEEECCccc-ccccchhhh
Confidence            44556667777777777543 33355556666777777766554 22233344433 4566666654322 234445555


Q ss_pred             CCCCCEEEcCCCcCCCCCCccccCCCCCCEEEecCcccccccCcccccccccCeEEccCCcCCCCCCcccCCCCCccEEE
Q 037302          162 LNQLSNLYLAYNNLVGPLPKEVGNMKNLDSLLLNRNSLTGPIPSTIGYLNLGGKLDLSHNRLDSPIPPTIGNLTNLTSLD  241 (408)
Q Consensus       162 ~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~l~~~~~L~~L~  241 (408)
                      +..++................+.........           ...+.....+..+.+.. .+..+...+|..|..|+.+.
T Consensus       204 c~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~ip~-~v~~i~~~aF~~c~~L~~i~  271 (394)
T 4gt6_A          204 CFALSTITSDSESYPAIDNVLYEKSANGDYA-----------LIRYPSQREDPAFKIPN-GVARIETHAFDSCAYLASVK  271 (394)
T ss_dssp             CTTCCEEEECCSSSCBSSSCEEEECTTSCEE-----------EEECCTTCCCSEEECCT-TEEEECTTTTTTCSSCCEEE
T ss_pred             ccccceecccccccccccceeeccccccccc-----------ccccccccccceEEcCC-cceEcccceeeecccccEEe
Confidence            6666555543322211000000000000000           00011112223333322 11222344566677777777


Q ss_pred             ccCCcccccCCccccCCCCCCEEeCCCCcccccCCccccCCCCCcEEeCCCCccccCCCcCCcCCCCCcEEEcCCCccCC
Q 037302          242 LSSNQLSGLLPREVGNLKYLDSLSLDGNNLIGSIPPTIGYLTNLTSLNLGYNQLSSSIPPELMNCSQLQNLVLSHNTLSG  321 (408)
Q Consensus       242 l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~  321 (408)
                      +..... .....+|.+++.|+.+.+... +......+|.+|.+|+.+.|.++ ++.....+|.+|.+|+++.+..+ ++.
T Consensus       272 lp~~~~-~I~~~aF~~c~~L~~i~l~~~-i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~C~~L~~i~ip~s-v~~  347 (394)
T 4gt6_A          272 MPDSVV-SIGTGAFMNCPALQDIEFSSR-ITELPESVFAGCISLKSIDIPEG-ITQILDDAFAGCEQLERIAIPSS-VTK  347 (394)
T ss_dssp             CCTTCC-EECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEECTT-CCB
T ss_pred             cccccc-eecCcccccccccccccCCCc-ccccCceeecCCCCcCEEEeCCc-ccEehHhHhhCCCCCCEEEECcc-cCE
Confidence            765432 244556666777777777532 33344556667777777777553 44455566777777777777543 444


Q ss_pred             cCCcccccCCCccEEEcCCccccccCCcCCCCCCCccEEeCCCCcc
Q 037302          322 IVPPEIGNLTHLRQLDLSHNFINGTIPSQLGYIPNISAVDLSKNNL  367 (408)
Q Consensus       322 ~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l  367 (408)
                      +...+|.+|++|+.+++.++....   .++..+.+|+.+.+..+.+
T Consensus       348 I~~~aF~~C~~L~~i~~~~~~~~~---~~~~~~~~L~~i~i~~~~~  390 (394)
T 4gt6_A          348 IPESAFSNCTALNNIEYSGSRSQW---NAISTDSGLQNLPVAPGSI  390 (394)
T ss_dssp             CCGGGGTTCTTCCEEEESSCHHHH---HTCBCCCCC----------
T ss_pred             EhHhHhhCCCCCCEEEECCceeeh---hhhhccCCCCEEEeCCCCE
Confidence            556677777777777777664331   3455666676666655443

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=99.75  E-value=1.5e-17  Score=146.66  Aligned_cols=176  Identities=31%  Similarity=0.406  Sum_probs=140.0

Q ss_pred             ccCCCCCCEEEecCcccccccCcccccccccCeEEccCCcCCCCCCcccCCCCCccEEEccCCcccccCCccccCCCCCC
Q 037302          183 VGNMKNLDSLLLNRNSLTGPIPSTIGYLNLGGKLDLSHNRLDSPIPPTIGNLTNLTSLDLSSNQLSGLLPREVGNLKYLD  262 (408)
Q Consensus       183 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~  262 (408)
                      +..+++|+.|++++|.+.+.  ..+..+++|+.|++++|.+....+  +..+++|+.|++++|.+.+.  ..+..+++|+
T Consensus        42 ~~~l~~L~~L~l~~~~i~~~--~~~~~l~~L~~L~L~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~  115 (291)
T 1h6t_A           42 QNELNSIDQIIANNSDIKSV--QGIQYLPNVTKLFLNGNKLTDIKP--LANLKNLGWLFLDENKVKDL--SSLKDLKKLK  115 (291)
T ss_dssp             HHHHHTCCEEECTTSCCCCC--TTGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCG--GGGTTCTTCC
T ss_pred             hhhcCcccEEEccCCCcccC--hhHhcCCCCCEEEccCCccCCCcc--cccCCCCCEEECCCCcCCCC--hhhccCCCCC
Confidence            45678899999999887644  247778899999999988876543  78889999999999888743  3477888999


Q ss_pred             EEeCCCCcccccCCccccCCCCCcEEeCCCCccccCCCcCCcCCCCCcEEEcCCCccCCcCCcccccCCCccEEEcCCcc
Q 037302          263 SLSLDGNNLIGSIPPTIGYLTNLTSLNLGYNQLSSSIPPELMNCSQLQNLVLSHNTLSGIVPPEIGNLTHLRQLDLSHNF  342 (408)
Q Consensus       263 ~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~  342 (408)
                      .|++++|.+...  ..+..+++|++|++++|.++..  ..+..+++|++|++++|.+.+..+  +..+++|+.|++++|.
T Consensus       116 ~L~L~~n~i~~~--~~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~N~l~~~~~--l~~l~~L~~L~L~~N~  189 (291)
T 1h6t_A          116 SLSLEHNGISDI--NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNH  189 (291)
T ss_dssp             EEECTTSCCCCC--GGGGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSC
T ss_pred             EEECCCCcCCCC--hhhcCCCCCCEEEccCCcCCcc--hhhccCCCCCEEEccCCccccchh--hcCCCccCEEECCCCc
Confidence            999999888753  4577888999999999988854  567788899999999998875543  7888899999999998


Q ss_pred             ccccCCcCCCCCCCccEEeCCCCccCCcCC
Q 037302          343 INGTIPSQLGYIPNISAVDLSKNNLSGVVP  372 (408)
Q Consensus       343 ~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~  372 (408)
                      +++. + .+..+++|+.|++++|++.....
T Consensus       190 i~~l-~-~l~~l~~L~~L~l~~n~i~~~~~  217 (291)
T 1h6t_A          190 ISDL-R-ALAGLKNLDVLELFSQECLNKPI  217 (291)
T ss_dssp             CCBC-G-GGTTCTTCSEEEEEEEEEECCCE
T ss_pred             CCCC-h-hhccCCCCCEEECcCCcccCCcc
Confidence            8854 3 37788899999999998876443

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}

Probab=99.75  E-value=1.8e-18  Score=155.51  Aligned_cols=103  Identities=19%  Similarity=0.226  Sum_probs=80.7

Q ss_pred             CCCccEEEccCCcccccCCccccCCCCCCEEeCCCCcccccCCccccCCCCCc-EEeCCCCccccCCCcCCcCCCCCcEE
Q 037302          234 LTNLTSLDLSSNQLSGLLPREVGNLKYLDSLSLDGNNLIGSIPPTIGYLTNLT-SLNLGYNQLSSSIPPELMNCSQLQNL  312 (408)
Q Consensus       234 ~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~-~L~l~~~~~~~~~~~~~~~~~~L~~L  312 (408)
                      |++|+.++++++.+......+|.+|.+|+++++.++ +......+|.+|++|+ .+++.+ .++.....+|.+|++|+.+
T Consensus       225 ~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~l  302 (329)
T 3sb4_A          225 MPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHN-LKTIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNLRYV  302 (329)
T ss_dssp             CTTCCEEECTTBCCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTTEEEE
T ss_pred             cCCCeEEECCCCCcceecHhhhhCCCCCCEEECCcc-cceehHHHhhCChhccEEEEEcc-cceEEchhhhhCCccCCEE
Confidence            677888888877777677777888888888888776 5555667788888888 888877 6666777788888888888


Q ss_pred             EcCCCccCCcCCcccccCCCccEEEc
Q 037302          313 VLSHNTLSGIVPPEIGNLTHLRQLDL  338 (408)
Q Consensus       313 ~l~~~~~~~~~~~~~~~~~~L~~L~l  338 (408)
                      +++++.++.+...+|.+|++|+.++.
T Consensus       303 ~l~~n~i~~I~~~aF~~~~~L~~ly~  328 (329)
T 3sb4_A          303 LATGDKITTLGDELFGNGVPSKLIYK  328 (329)
T ss_dssp             EECSSCCCEECTTTTCTTCCCCEEEC
T ss_pred             EeCCCccCccchhhhcCCcchhhhcc
Confidence            88888887777788888888888764

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}

Probab=99.74  E-value=2.4e-18  Score=154.68  Aligned_cols=126  Identities=16%  Similarity=0.069  Sum_probs=92.4

Q ss_pred             CCccEEEccCCcccccCCccccCCCCCCEEeCCCCcccccCCccccCCCCCcEEeCCCCccccCCCcCCcCCCCCc-EEE
Q 037302          235 TNLTSLDLSSNQLSGLLPREVGNLKYLDSLSLDGNNLIGSIPPTIGYLTNLTSLNLGYNQLSSSIPPELMNCSQLQ-NLV  313 (408)
Q Consensus       235 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~-~L~  313 (408)
                      .++..+.+.+.-...........+++|+.++++++.+......+|.+|++|+.+++.++ +......+|.+|++|+ .+.
T Consensus       202 ~~~~~l~~~~~l~~~~~~~l~~~~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~  280 (329)
T 3sb4_A          202 RDINFLTIEGKLDNADFKLIRDYMPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHN-LKTIGQRVFSNCGRLAGTLE  280 (329)
T ss_dssp             GGCSEEEEEECCCHHHHHHHHHHCTTCCEEECTTBCCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEE
T ss_pred             cccceEEEeeeecHHHHHHHHHhcCCCeEEECCCCCcceecHhhhhCCCCCCEEECCcc-cceehHHHhhCChhccEEEE
Confidence            45555665554222111111224788888888888777677778888888888888887 6667777888888888 888


Q ss_pred             cCCCccCCcCCcccccCCCccEEEcCCccccccCCcCCCCCCCccEEeC
Q 037302          314 LSHNTLSGIVPPEIGNLTHLRQLDLSHNFINGTIPSQLGYIPNISAVDL  362 (408)
Q Consensus       314 l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l  362 (408)
                      +.+ .++.+...+|.+|++|+.+++.++.++...+.+|.+|++|+.+..
T Consensus       281 l~~-~l~~I~~~aF~~c~~L~~l~l~~n~i~~I~~~aF~~~~~L~~ly~  328 (329)
T 3sb4_A          281 LPA-SVTAIEFGAFMGCDNLRYVLATGDKITTLGDELFGNGVPSKLIYK  328 (329)
T ss_dssp             ECT-TCCEECTTTTTTCTTEEEEEECSSCCCEECTTTTCTTCCCCEEEC
T ss_pred             Ecc-cceEEchhhhhCCccCCEEEeCCCccCccchhhhcCCcchhhhcc
Confidence            888 676677788888888888888888888777778888888888753

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A

Probab=99.74  E-value=1.1e-16  Score=146.96  Aligned_cols=269  Identities=10%  Similarity=0.087  Sum_probs=161.5

Q ss_pred             cCCCCCCcEEEcCCCccccccchhhccCCCCcEEeCCCCcCCCCCcccccCCCCCcEEeCCCceecccCcccccCCCCCc
Q 037302           15 FTCFPNLESIIIPYTLLSGRIPSEIGALSKLEELALPYNSLTGTIPAEIGSLRNLVELDLSNNILNGSIPLEFGNLKDLD   94 (408)
Q Consensus        15 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~   94 (408)
                      +..+..++.+.+.+. +...-..+|..+ +|+.+.+..+ ++.+...+|.++ +|+.+.+.. .+..+...+|.+|++|+
T Consensus       109 ~~~~~~l~~i~ip~~-i~~I~~~aF~~~-~L~~i~l~~~-i~~I~~~aF~~~-~L~~i~lp~-~l~~I~~~aF~~c~~L~  183 (401)
T 4fdw_A          109 TEILKGYNEIILPNS-VKSIPKDAFRNS-QIAKVVLNEG-LKSIGDMAFFNS-TVQEIVFPS-TLEQLKEDIFYYCYNLK  183 (401)
T ss_dssp             EEECSSCSEEECCTT-CCEECTTTTTTC-CCSEEECCTT-CCEECTTTTTTC-CCCEEECCT-TCCEECSSTTTTCTTCC
T ss_pred             EEecCCccEEEECCc-cCEehHhhcccC-CccEEEeCCC-ccEECHHhcCCC-CceEEEeCC-CccEehHHHhhCcccCC
Confidence            334455566665432 222223344443 5666666544 443445555553 466666664 33334455666666666


Q ss_pred             eeecCCccccccCCCcCCCCCCCCEEEcCCCeecccCcccccCCCCCceEeccCCcccCcCchhhccCCCCCEEEcCCCc
Q 037302           95 ALRLRGNKLDGLIPSSIGNLTNLTHLDLSLNQLSGRLPQEVGNLKNLLSLFLDNNNLTGPIPSTLYHLNQLSNLYLAYNN  174 (408)
Q Consensus        95 ~L~l~~~~i~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~  174 (408)
                      .+++..+.++.+....|. +.+|+.+.+..+ +..+...+|..+++|+.+.+..+ ++.+...+|.. .+|+.+.+.. .
T Consensus       184 ~l~l~~n~l~~I~~~aF~-~~~L~~l~lp~~-l~~I~~~aF~~~~~L~~l~l~~~-l~~I~~~aF~~-~~L~~i~lp~-~  258 (401)
T 4fdw_A          184 KADLSKTKITKLPASTFV-YAGIEEVLLPVT-LKEIGSQAFLKTSQLKTIEIPEN-VSTIGQEAFRE-SGITTVKLPN-G  258 (401)
T ss_dssp             EEECTTSCCSEECTTTTT-TCCCSEEECCTT-CCEECTTTTTTCTTCCCEECCTT-CCEECTTTTTT-CCCSEEEEET-T
T ss_pred             eeecCCCcceEechhhEe-ecccCEEEeCCc-hheehhhHhhCCCCCCEEecCCC-ccCcccccccc-CCccEEEeCC-C
Confidence            666666666655555555 466666666543 44445556666666777666653 33344455555 5677766633 2


Q ss_pred             CCCCCCccccCCCCCCEEEecCcccc-----cccCcccccccccCeEEccCCcCCCCCCcccCCCCCccEEEccCCcccc
Q 037302          175 LVGPLPKEVGNMKNLDSLLLNRNSLT-----GPIPSTIGYLNLGGKLDLSHNRLDSPIPPTIGNLTNLTSLDLSSNQLSG  249 (408)
Q Consensus       175 ~~~~~~~~~~~~~~L~~L~l~~~~~~-----~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~  249 (408)
                      +......+|..|++|+.+.+.++...     ......|..|+.|+.+.+.. .+..+...+|..|++|+.+.+..+ +..
T Consensus       259 i~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~~-~i~~I~~~aF~~c~~L~~l~lp~~-l~~  336 (401)
T 4fdw_A          259 VTNIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIPE-SIRILGQGLLGGNRKVTQLTIPAN-VTQ  336 (401)
T ss_dssp             CCEECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCCT-TCCEECTTTTTTCCSCCEEEECTT-CCE
T ss_pred             ccEEChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeCC-ceEEEhhhhhcCCCCccEEEECcc-ccE
Confidence            33334456677777777777665443     24456677778888887774 355556677888888888888654 555


Q ss_pred             cCCccccCCCCCCEEeCCCCcccccCCccccCCC-CCcEEeCCCCccc
Q 037302          250 LLPREVGNLKYLDSLSLDGNNLIGSIPPTIGYLT-NLTSLNLGYNQLS  296 (408)
Q Consensus       250 ~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~-~L~~L~l~~~~~~  296 (408)
                      ....+|.++ +|+.+.+.++.........+..++ +++.+.+..+.+.
T Consensus       337 I~~~aF~~~-~L~~l~l~~n~~~~l~~~~F~~~~~~l~~l~vp~~~~~  383 (401)
T 4fdw_A          337 INFSAFNNT-GIKEVKVEGTTPPQVFEKVWYGFPDDITVIRVPAESVE  383 (401)
T ss_dssp             ECTTSSSSS-CCCEEEECCSSCCBCCCSSCCCSCTTCCEEEECGGGHH
T ss_pred             EcHHhCCCC-CCCEEEEcCCCCcccccccccCCCCCccEEEeCHHHHH
Confidence            666778888 888888888776655555566664 6778888766544

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A

Probab=99.74  E-value=2.8e-16  Score=144.17  Aligned_cols=265  Identities=11%  Similarity=0.105  Sum_probs=147.6

Q ss_pred             CCCCCceeecCCccccccCCCcCCCCCCCCEEEcCCCeecccCcccccCCCCCceEeccCCcccCcCchhhccCCCCCEE
Q 037302           89 NLKDLDALRLRGNKLDGLIPSSIGNLTNLTHLDLSLNQLSGRLPQEVGNLKNLLSLFLDNNNLTGPIPSTLYHLNQLSNL  168 (408)
Q Consensus        89 ~l~~L~~L~l~~~~i~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L  168 (408)
                      .+..++.+.+... ++.+...+|.++ +|+.+.+..+ +..+...+|..+ +|+.+.+.. .+..+...+|..|++|+.+
T Consensus       111 ~~~~l~~i~ip~~-i~~I~~~aF~~~-~L~~i~l~~~-i~~I~~~aF~~~-~L~~i~lp~-~l~~I~~~aF~~c~~L~~l  185 (401)
T 4fdw_A          111 ILKGYNEIILPNS-VKSIPKDAFRNS-QIAKVVLNEG-LKSIGDMAFFNS-TVQEIVFPS-TLEQLKEDIFYYCYNLKKA  185 (401)
T ss_dssp             ECSSCSEEECCTT-CCEECTTTTTTC-CCSEEECCTT-CCEECTTTTTTC-CCCEEECCT-TCCEECSSTTTTCTTCCEE
T ss_pred             ecCCccEEEECCc-cCEehHhhcccC-CccEEEeCCC-ccEECHHhcCCC-CceEEEeCC-CccEehHHHhhCcccCCee
Confidence            4466777777654 444556666664 6777777655 444455566653 577777764 3444555566777777777


Q ss_pred             EcCCCcCCCCCCccccCCCCCCEEEecCcccccccCcccccccccCeEEccCCcCCCCCCcccCCCCCccEEEccCCccc
Q 037302          169 YLAYNNLVGPLPKEVGNMKNLDSLLLNRNSLTGPIPSTIGYLNLGGKLDLSHNRLDSPIPPTIGNLTNLTSLDLSSNQLS  248 (408)
Q Consensus       169 ~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~  248 (408)
                      ++..+.+.......|. +.+|+++.+..+ +.......|..++.|+.+.+..+ +..+...+|.. ++|+.+.+.. .+.
T Consensus       186 ~l~~n~l~~I~~~aF~-~~~L~~l~lp~~-l~~I~~~aF~~~~~L~~l~l~~~-l~~I~~~aF~~-~~L~~i~lp~-~i~  260 (401)
T 4fdw_A          186 DLSKTKITKLPASTFV-YAGIEEVLLPVT-LKEIGSQAFLKTSQLKTIEIPEN-VSTIGQEAFRE-SGITTVKLPN-GVT  260 (401)
T ss_dssp             ECTTSCCSEECTTTTT-TCCCSEEECCTT-CCEECTTTTTTCTTCCCEECCTT-CCEECTTTTTT-CCCSEEEEET-TCC
T ss_pred             ecCCCcceEechhhEe-ecccCEEEeCCc-hheehhhHhhCCCCCCEEecCCC-ccCcccccccc-CCccEEEeCC-Ccc
Confidence            7766655544444444 466666666543 43344555666666666666542 33334444554 4566666632 334


Q ss_pred             ccCCccccCCCCCCEEeCCCCccc-----ccCCccccCCCCCcEEeCCCCccccCCCcCCcCCCCCcEEEcCCCccCCcC
Q 037302          249 GLLPREVGNLKYLDSLSLDGNNLI-----GSIPPTIGYLTNLTSLNLGYNQLSSSIPPELMNCSQLQNLVLSHNTLSGIV  323 (408)
Q Consensus       249 ~~~~~~~~~~~~L~~L~l~~~~~~-----~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~  323 (408)
                      .....+|.+|++|+.+.+.++...     .....+|.+|++|+.+.+.+ .+......+|.+|++|+.+.+..+ ++.+.
T Consensus       261 ~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~~-~i~~I~~~aF~~c~~L~~l~lp~~-l~~I~  338 (401)
T 4fdw_A          261 NIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIPE-SIRILGQGLLGGNRKVTQLTIPAN-VTQIN  338 (401)
T ss_dssp             EECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCCT-TCCEECTTTTTTCCSCCEEEECTT-CCEEC
T ss_pred             EEChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeCC-ceEEEhhhhhcCCCCccEEEECcc-ccEEc
Confidence            344555666666666666554432     23344555566666666653 244445555556666666666433 44445


Q ss_pred             CcccccCCCccEEEcCCccccccCCcCCCCCC-CccEEeCCCCc
Q 037302          324 PPEIGNLTHLRQLDLSHNFINGTIPSQLGYIP-NISAVDLSKNN  366 (408)
Q Consensus       324 ~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~-~L~~L~l~~~~  366 (408)
                      ..+|.+| +|+.+.+.++.........|.+++ +++.|.+-.+.
T Consensus       339 ~~aF~~~-~L~~l~l~~n~~~~l~~~~F~~~~~~l~~l~vp~~~  381 (401)
T 4fdw_A          339 FSAFNNT-GIKEVKVEGTTPPQVFEKVWYGFPDDITVIRVPAES  381 (401)
T ss_dssp             TTSSSSS-CCCEEEECCSSCCBCCCSSCCCSCTTCCEEEECGGG
T ss_pred             HHhCCCC-CCCEEEEcCCCCcccccccccCCCCCccEEEeCHHH
Confidence            5556655 666666666655544444555543 45555554443

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*

Probab=99.73  E-value=9.7e-17  Score=145.46  Aligned_cols=240  Identities=17%  Similarity=0.133  Sum_probs=170.1

Q ss_pred             ceeecCCccccccCCCcCCCCCCCCEEEcCCCeecccCcccccCCCCCceEeccCCcccCcC-chhhccCCCCCEE-EcC
Q 037302           94 DALRLRGNKLDGLIPSSIGNLTNLTHLDLSLNQLSGRLPQEVGNLKNLLSLFLDNNNLTGPI-PSTLYHLNQLSNL-YLA  171 (408)
Q Consensus        94 ~~L~l~~~~i~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~-~~~~~~~~~L~~L-~l~  171 (408)
                      +.++.++++++.++ ..+  .+++++|++++|.++...+.+|..+++|++|++++|.+.... ...|.++++++++ ...
T Consensus        12 ~~v~C~~~~Lt~iP-~~l--~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~   88 (350)
T 4ay9_X           12 RVFLCQESKVTEIP-SDL--PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEK   88 (350)
T ss_dssp             TEEEEESTTCCSCC-TTC--CTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEE
T ss_pred             CEEEecCCCCCccC-cCc--CCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhccc
Confidence            56777777777553 334  368999999999998666678899999999999999875433 4567788888765 445


Q ss_pred             CCcCCCCCCccccCCCCCCEEEecCcccccccCcccccccccCeEEccC-CcCCCCCCcccCCC-CCccEEEccCCcccc
Q 037302          172 YNNLVGPLPKEVGNMKNLDSLLLNRNSLTGPIPSTIGYLNLGGKLDLSH-NRLDSPIPPTIGNL-TNLTSLDLSSNQLSG  249 (408)
Q Consensus       172 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~-~~~~~~~~~~l~~~-~~L~~L~l~~~~~~~  249 (408)
                      .+.+....+..|..+++|+.|++++|.+.......+.....+..+++.+ +.+.......+..+ ..++.|++++|.+..
T Consensus        89 ~N~l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~~  168 (350)
T 4ay9_X           89 ANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQE  168 (350)
T ss_dssp             ETTCCEECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCCE
T ss_pred             CCcccccCchhhhhccccccccccccccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhccccccccC
Confidence            5677666677888999999999999988766555555666677777755 45554444455554 368888999888875


Q ss_pred             cCCccccCCCCCCEEeCCC-CcccccCCccccCCCCCcEEeCCCCccccCCCcCCcCCCCCcEEEcCCCccCCcCCcccc
Q 037302          250 LLPREVGNLKYLDSLSLDG-NNLIGSIPPTIGYLTNLTSLNLGYNQLSSSIPPELMNCSQLQNLVLSHNTLSGIVPPEIG  328 (408)
Q Consensus       250 ~~~~~~~~~~~L~~L~l~~-~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~  328 (408)
                      .....+. ..+|+.+.+.+ +.+......++..+++|++|++++|.++......   +.+|+.|.+.++.--+..+ .+.
T Consensus       169 i~~~~f~-~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~l~~lp~~~---~~~L~~L~~l~~~~l~~lP-~l~  243 (350)
T 4ay9_X          169 IHNSAFN-GTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSYG---LENLKKLRARSTYNLKKLP-TLE  243 (350)
T ss_dssp             ECTTSST-TEEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTSCCCCCCSSS---CTTCCEEECTTCTTCCCCC-CTT
T ss_pred             CChhhcc-ccchhHHhhccCCcccCCCHHHhccCcccchhhcCCCCcCccChhh---hccchHhhhccCCCcCcCC-Cch
Confidence            5554443 45788888875 4455445566788888999999998888554433   4566666666554332333 467


Q ss_pred             cCCCccEEEcCCc
Q 037302          329 NLTHLRQLDLSHN  341 (408)
Q Consensus       329 ~~~~L~~L~l~~~  341 (408)
                      .+++|+.+++.++
T Consensus       244 ~l~~L~~l~l~~~  256 (350)
T 4ay9_X          244 KLVALMEASLTYP  256 (350)
T ss_dssp             TCCSCCEEECSCH
T ss_pred             hCcChhhCcCCCC
Confidence            7888888888765

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=99.73  E-value=3.9e-17  Score=143.96  Aligned_cols=171  Identities=27%  Similarity=0.391  Sum_probs=90.3

Q ss_pred             CCCCCCcEEEcCCCccccccchhhccCCCCcEEeCCCCcCCCCCcccccCCCCCcEEeCCCceecccCcccccCCCCCce
Q 037302           16 TCFPNLESIIIPYTLLSGRIPSEIGALSKLEELALPYNSLTGTIPAEIGSLRNLVELDLSNNILNGSIPLEFGNLKDLDA   95 (408)
Q Consensus        16 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~   95 (408)
                      ..+++|+.|+++++.+... + .+..+++|++|++++|.+++..+  +..+++|+.|++++|.+.+ .+ .+..+++|++
T Consensus        43 ~~l~~L~~L~l~~~~i~~~-~-~~~~l~~L~~L~L~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~-~~-~l~~l~~L~~  116 (291)
T 1h6t_A           43 NELNSIDQIIANNSDIKSV-Q-GIQYLPNVTKLFLNGNKLTDIKP--LANLKNLGWLFLDENKVKD-LS-SLKDLKKLKS  116 (291)
T ss_dssp             HHHHTCCEEECTTSCCCCC-T-TGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCC-GG-GGTTCTTCCE
T ss_pred             hhcCcccEEEccCCCcccC-h-hHhcCCCCCEEEccCCccCCCcc--cccCCCCCEEECCCCcCCC-Ch-hhccCCCCCE
Confidence            3455566666666555432 2 25555666666666665553322  5556666666666665542 22 2555556666


Q ss_pred             eecCCccccccCCCcCCCCCCCCEEEcCCCeecccCcccccCCCCCceEeccCCcccCcCchhhccCCCCCEEEcCCCcC
Q 037302           96 LRLRGNKLDGLIPSSIGNLTNLTHLDLSLNQLSGRLPQEVGNLKNLLSLFLDNNNLTGPIPSTLYHLNQLSNLYLAYNNL  175 (408)
Q Consensus        96 L~l~~~~i~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~  175 (408)
                      |++++|.+...  ..+..+++|++|++++|.+...  ..+..+++|++|++++|.+....+  +..+++|+.|++++|.+
T Consensus       117 L~L~~n~i~~~--~~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~N~l~~~~~--l~~l~~L~~L~L~~N~i  190 (291)
T 1h6t_A          117 LSLEHNGISDI--NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHI  190 (291)
T ss_dssp             EECTTSCCCCC--GGGGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCC
T ss_pred             EECCCCcCCCC--hhhcCCCCCCEEEccCCcCCcc--hhhccCCCCCEEEccCCccccchh--hcCCCccCEEECCCCcC
Confidence            66666555433  3345555566666655555432  345555555555555555543322  45555555555555555


Q ss_pred             CCCCCccccCCCCCCEEEecCcccc
Q 037302          176 VGPLPKEVGNMKNLDSLLLNRNSLT  200 (408)
Q Consensus       176 ~~~~~~~~~~~~~L~~L~l~~~~~~  200 (408)
                      ...  ..+..+++|+.|++++|.+.
T Consensus       191 ~~l--~~l~~l~~L~~L~l~~n~i~  213 (291)
T 1h6t_A          191 SDL--RALAGLKNLDVLELFSQECL  213 (291)
T ss_dssp             CBC--GGGTTCTTCSEEEEEEEEEE
T ss_pred             CCC--hhhccCCCCCEEECcCCccc
Confidence            432  22455555555555555543

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=99.73  E-value=1.4e-16  Score=134.35  Aligned_cols=153  Identities=20%  Similarity=0.246  Sum_probs=121.5

Q ss_pred             CeEEccCCcCCCCCCcccCCCCCccEEEccCCcccccCCccccCCCCCCEEeCCCCcccccCCccccCCCCCcEEeCCCC
Q 037302          214 GKLDLSHNRLDSPIPPTIGNLTNLTSLDLSSNQLSGLLPREVGNLKYLDSLSLDGNNLIGSIPPTIGYLTNLTSLNLGYN  293 (408)
Q Consensus       214 ~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~  293 (408)
                      +.++++++.++.+ |..+.  ++++.|+++++.+....+..+..+++|+.|++++|.+....+..+..+++|++|++++|
T Consensus        14 ~~v~c~~~~l~~i-P~~l~--~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N   90 (220)
T 2v9t_B           14 NIVDCRGKGLTEI-PTNLP--ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGN   90 (220)
T ss_dssp             TEEECTTSCCSSC-CSSCC--TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSS
T ss_pred             CEEEcCCCCcCcC-CCccC--cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCC
Confidence            3566666655543 33332  57888888888887666667788888888888888887666777888888899999888


Q ss_pred             ccccCCCcCCcCCCCCcEEEcCCCccCCcCCcccccCCCccEEEcCCccccccCCcCCCCCCCccEEeCCCCccCC
Q 037302          294 QLSSSIPPELMNCSQLQNLVLSHNTLSGIVPPEIGNLTHLRQLDLSHNFINGTIPSQLGYIPNISAVDLSKNNLSG  369 (408)
Q Consensus       294 ~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~  369 (408)
                      .++...+..|..+++|++|++++|++.+..+..|..+++|+.|++++|.+++..+..+..+++|+.|++++|++..
T Consensus        91 ~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c  166 (220)
T 2v9t_B           91 KITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPFIC  166 (220)
T ss_dssp             CCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCEEC
T ss_pred             cCCccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCCcCC
Confidence            8886666667888889999999998887777888888899999999998887777778888889999999988864

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=99.73  E-value=4.8e-17  Score=148.06  Aligned_cols=154  Identities=27%  Similarity=0.265  Sum_probs=74.7

Q ss_pred             CccEEEccCCcccccCCcccc-CCCCCCEEeCCCCcccccCCccccCCCCCcEEeCCCCccccCCCcCCcCCCCCcEEEc
Q 037302          236 NLTSLDLSSNQLSGLLPREVG-NLKYLDSLSLDGNNLIGSIPPTIGYLTNLTSLNLGYNQLSSSIPPELMNCSQLQNLVL  314 (408)
Q Consensus       236 ~L~~L~l~~~~~~~~~~~~~~-~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l  314 (408)
                      .++.|++++|.++......+. .+++|+.|++++|.+....+..+..+++|++|++++|.++...+..|.++++|++|++
T Consensus        40 ~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L  119 (361)
T 2xot_A           40 YTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNHLHTLDEFLFSDLQALEVLLL  119 (361)
T ss_dssp             TCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEEC
T ss_pred             CCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCCCcCCcCCHHHhCCCcCCCEEEC
Confidence            345555555554444444443 4455555555555554444444455555555555555555444444555555555555


Q ss_pred             CCCccCCcCCcccccCCCccEEEcCCccccccCCcCC---CCCCCccEEeCCCCccCCcCCccccCC-----CeEEccCC
Q 037302          315 SHNTLSGIVPPEIGNLTHLRQLDLSHNFINGTIPSQL---GYIPNISAVDLSKNNLSGVVPASVRII-----PKLIVSEN  386 (408)
Q Consensus       315 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~---~~~~~L~~L~l~~~~l~~~~~~~~~~l-----~~l~l~~n  386 (408)
                      ++|.+..+.+..|..+++|+.|++++|.++...+..+   ..+++|+.|++++|++..+.+..+..+     +.|++.+|
T Consensus       120 ~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~~~l~~l~l~~N  199 (361)
T 2xot_A          120 YNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLKKLPLTDLQKLPAWVKNGLYLHNN  199 (361)
T ss_dssp             CSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCSSCCCCCCHHHHHHSCHHHHTTEECCSS
T ss_pred             CCCcccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCCCCCccCHHHhhhccHhhcceEEecCC
Confidence            5555554444455555555555555555553333333   334555555555555554443333332     23555555


Q ss_pred             ccC
Q 037302          387 NLE  389 (408)
Q Consensus       387 ~~~  389 (408)
                      ++.
T Consensus       200 ~~~  202 (361)
T 2xot_A          200 PLE  202 (361)
T ss_dssp             CEE
T ss_pred             Ccc
Confidence            543

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=99.72  E-value=1.2e-16  Score=134.66  Aligned_cols=150  Identities=20%  Similarity=0.274  Sum_probs=132.2

Q ss_pred             cEEEccCCcccccCCccccCCCCCCEEeCCCCcccccCCccccCCCCCcEEeCCCCccccCCCcCCcCCCCCcEEEcCCC
Q 037302          238 TSLDLSSNQLSGLLPREVGNLKYLDSLSLDGNNLIGSIPPTIGYLTNLTSLNLGYNQLSSSIPPELMNCSQLQNLVLSHN  317 (408)
Q Consensus       238 ~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~  317 (408)
                      +.++.+++.++. .+..+  .++++.|+++++.+....+..+..+++|++|++++|.++...+..|.++++|++|++++|
T Consensus        14 ~~v~c~~~~l~~-iP~~l--~~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N   90 (220)
T 2v9t_B           14 NIVDCRGKGLTE-IPTNL--PETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGN   90 (220)
T ss_dssp             TEEECTTSCCSS-CCSSC--CTTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSS
T ss_pred             CEEEcCCCCcCc-CCCcc--CcCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCC
Confidence            578888887774 33333  278999999999998777778899999999999999999888889999999999999999


Q ss_pred             ccCCcCCcccccCCCccEEEcCCccccccCCcCCCCCCCccEEeCCCCccCCcCCcccc---CCCeEEccCCccCC
Q 037302          318 TLSGIVPPEIGNLTHLRQLDLSHNFINGTIPSQLGYIPNISAVDLSKNNLSGVVPASVR---IIPKLIVSENNLEL  390 (408)
Q Consensus       318 ~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~---~l~~l~l~~n~~~~  390 (408)
                      .++.+....|..+++|++|++++|++++..+..+..+++|+.|++++|+++++.+..+.   ++++|++++|++.+
T Consensus        91 ~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c  166 (220)
T 2v9t_B           91 KITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPFIC  166 (220)
T ss_dssp             CCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCEEC
T ss_pred             cCCccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCCcCC
Confidence            99977777789999999999999999988889999999999999999999999887666   46699999999864

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A

Probab=99.72  E-value=5.7e-17  Score=156.38  Aligned_cols=180  Identities=30%  Similarity=0.393  Sum_probs=150.0

Q ss_pred             ccCCCCCCEEEecCcccccccCcccccccccCeEEccCCcCCCCCCcccCCCCCccEEEccCCcccccCCccccCCCCCC
Q 037302          183 VGNMKNLDSLLLNRNSLTGPIPSTIGYLNLGGKLDLSHNRLDSPIPPTIGNLTNLTSLDLSSNQLSGLLPREVGNLKYLD  262 (408)
Q Consensus       183 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~  262 (408)
                      +..+++|+.|+++++.+... + .+..++.|+.|++++|.+....+  +..+++|+.|++++|.+...  ..+..+++|+
T Consensus        39 ~~~L~~L~~L~l~~n~i~~l-~-~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~  112 (605)
T 1m9s_A           39 QNELNSIDQIIANNSDIKSV-Q-GIQYLPNVTKLFLNGNKLTDIKP--LTNLKNLGWLFLDENKIKDL--SSLKDLKKLK  112 (605)
T ss_dssp             HHHHTTCCCCBCTTCCCCCC-T-TGGGCTTCCEEECTTSCCCCCGG--GGGCTTCCEEECCSSCCCCC--TTSTTCTTCC
T ss_pred             hhcCCCCCEEECcCCCCCCC-h-HHccCCCCCEEEeeCCCCCCChh--hccCCCCCEEECcCCCCCCC--hhhccCCCCC
Confidence            46688899999999988743 2 57889999999999999876544  78899999999999988743  3678899999


Q ss_pred             EEeCCCCcccccCCccccCCCCCcEEeCCCCccccCCCcCCcCCCCCcEEEcCCCccCCcCCcccccCCCccEEEcCCcc
Q 037302          263 SLSLDGNNLIGSIPPTIGYLTNLTSLNLGYNQLSSSIPPELMNCSQLQNLVLSHNTLSGIVPPEIGNLTHLRQLDLSHNF  342 (408)
Q Consensus       263 ~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~  342 (408)
                      .|++++|.+...  ..+..+++|+.|++++|.+...  ..+..+++|+.|+|++|.+.+..+  +..+++|+.|++++|+
T Consensus       113 ~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~  186 (605)
T 1m9s_A          113 SLSLEHNGISDI--NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNH  186 (605)
T ss_dssp             EEECTTSCCCCC--GGGGGCTTCSEEECCSSCCCCC--GGGGSCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSC
T ss_pred             EEEecCCCCCCC--ccccCCCccCEEECCCCccCCc--hhhcccCCCCEEECcCCcCCCchh--hccCCCCCEEECcCCC
Confidence            999999998753  4578899999999999999854  668889999999999999986644  8889999999999999


Q ss_pred             ccccCCcCCCCCCCccEEeCCCCccCCcCCcccc
Q 037302          343 INGTIPSQLGYIPNISAVDLSKNNLSGVVPASVR  376 (408)
Q Consensus       343 ~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~  376 (408)
                      +.+.  ..+..+++|+.|++++|++.+.....+.
T Consensus       187 i~~l--~~l~~l~~L~~L~L~~N~l~~~p~~~~~  218 (605)
T 1m9s_A          187 ISDL--RALAGLKNLDVLELFSQECLNKPINHQS  218 (605)
T ss_dssp             CCBC--GGGTTCTTCSEEECCSEEEECCCCCCCS
T ss_pred             CCCC--hHHccCCCCCEEEccCCcCcCCcccccc
Confidence            9864  3578899999999999999876444433

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A

Probab=99.72  E-value=1.2e-16  Score=154.09  Aligned_cols=172  Identities=29%  Similarity=0.407  Sum_probs=111.3

Q ss_pred             cCCCCCEEEcCCCcCCCCCCccccCCCCCCEEEecCcccccccCcccccccccCeEEccCCcCCCCCCcccCCCCCccEE
Q 037302          161 HLNQLSNLYLAYNNLVGPLPKEVGNMKNLDSLLLNRNSLTGPIPSTIGYLNLGGKLDLSHNRLDSPIPPTIGNLTNLTSL  240 (408)
Q Consensus       161 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~l~~~~~L~~L  240 (408)
                      .++.|+.|+++++.+...  ..+..+++|+.|++++|.+.+..+  +..++.|+.|++++|.+...  ..+..+++|+.|
T Consensus        41 ~L~~L~~L~l~~n~i~~l--~~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L  114 (605)
T 1m9s_A           41 ELNSIDQIIANNSDIKSV--QGIQYLPNVTKLFLNGNKLTDIKP--LTNLKNLGWLFLDENKIKDL--SSLKDLKKLKSL  114 (605)
T ss_dssp             HHTTCCCCBCTTCCCCCC--TTGGGCTTCCEEECTTSCCCCCGG--GGGCTTCCEEECCSSCCCCC--TTSTTCTTCCEE
T ss_pred             cCCCCCEEECcCCCCCCC--hHHccCCCCCEEEeeCCCCCCChh--hccCCCCCEEECcCCCCCCC--hhhccCCCCCEE
Confidence            344455555555444322  124455555555555555443222  45555666666666555432  246667777777


Q ss_pred             EccCCcccccCCccccCCCCCCEEeCCCCcccccCCccccCCCCCcEEeCCCCccccCCCcCCcCCCCCcEEEcCCCccC
Q 037302          241 DLSSNQLSGLLPREVGNLKYLDSLSLDGNNLIGSIPPTIGYLTNLTSLNLGYNQLSSSIPPELMNCSQLQNLVLSHNTLS  320 (408)
Q Consensus       241 ~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~  320 (408)
                      ++++|.+.+.  ..+..+++|+.|++++|.+...  ..+..+++|+.|+|++|.+....+  +..+++|+.|+|++|.+.
T Consensus       115 ~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~i~  188 (605)
T 1m9s_A          115 SLEHNGISDI--NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHIS  188 (605)
T ss_dssp             ECTTSCCCCC--GGGGGCTTCSEEECCSSCCCCC--GGGGSCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCC
T ss_pred             EecCCCCCCC--ccccCCCccCEEECCCCccCCc--hhhcccCCCCEEECcCCcCCCchh--hccCCCCCEEECcCCCCC
Confidence            7777776642  3466777888888888877643  556778888888888888775443  777888888888888887


Q ss_pred             CcCCcccccCCCccEEEcCCcccccc
Q 037302          321 GIVPPEIGNLTHLRQLDLSHNFINGT  346 (408)
Q Consensus       321 ~~~~~~~~~~~~L~~L~l~~~~~~~~  346 (408)
                      +.  ..+..+++|+.|++++|++.+.
T Consensus       189 ~l--~~l~~l~~L~~L~L~~N~l~~~  212 (605)
T 1m9s_A          189 DL--RALAGLKNLDVLELFSQECLNK  212 (605)
T ss_dssp             BC--GGGTTCTTCSEEECCSEEEECC
T ss_pred             CC--hHHccCCCCCEEEccCCcCcCC
Confidence            54  4677788888888888888754

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=99.72  E-value=1.5e-16  Score=134.05  Aligned_cols=155  Identities=19%  Similarity=0.241  Sum_probs=131.4

Q ss_pred             CeEEccCCcCCCCCCcccCCCCCccEEEccCCcccccC-CccccCCCCCCEEeCCCCcccccCCccccCCCCCcEEeCCC
Q 037302          214 GKLDLSHNRLDSPIPPTIGNLTNLTSLDLSSNQLSGLL-PREVGNLKYLDSLSLDGNNLIGSIPPTIGYLTNLTSLNLGY  292 (408)
Q Consensus       214 ~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~-~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~  292 (408)
                      +.++++++.+..+ |..+  ...+++|++++|.+.... ...+..+++|+.|+++++.+....+..+..+++|++|++++
T Consensus        14 ~~l~~s~n~l~~i-P~~~--~~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~   90 (220)
T 2v70_A           14 TTVDCSNQKLNKI-PEHI--PQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTS   90 (220)
T ss_dssp             TEEECCSSCCSSC-CSCC--CTTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred             CEeEeCCCCcccC-ccCC--CCCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCC
Confidence            4788888887653 4333  346789999999888653 35578899999999999998877777888999999999999


Q ss_pred             CccccCCCcCCcCCCCCcEEEcCCCccCCcCCcccccCCCccEEEcCCccccccCCcCCCCCCCccEEeCCCCccCCcC
Q 037302          293 NQLSSSIPPELMNCSQLQNLVLSHNTLSGIVPPEIGNLTHLRQLDLSHNFINGTIPSQLGYIPNISAVDLSKNNLSGVV  371 (408)
Q Consensus       293 ~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~  371 (408)
                      |.++...+..+..+++|++|++++|++.+..+..|..+++|++|++++|++++..|..+..+++|+.|++++|++....
T Consensus        91 N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c  169 (220)
T 2v70_A           91 NRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPFNCNC  169 (220)
T ss_dssp             SCCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCEECSG
T ss_pred             CccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCCcCCC
Confidence            9999777777889999999999999999888888999999999999999999888889999999999999999997653

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=99.72  E-value=1.8e-16  Score=133.60  Aligned_cols=152  Identities=19%  Similarity=0.248  Sum_probs=99.0

Q ss_pred             CEEEecCcccccccCcccccccccCeEEccCCcCCCCCC-cccCCCCCccEEEccCCcccccCCccccCCCCCCEEeCCC
Q 037302          190 DSLLLNRNSLTGPIPSTIGYLNLGGKLDLSHNRLDSPIP-PTIGNLTNLTSLDLSSNQLSGLLPREVGNLKYLDSLSLDG  268 (408)
Q Consensus       190 ~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~-~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~  268 (408)
                      +.++++++.+... +..+  .+.++.|+++++.+....+ ..+..+++|++|++++|.+....+..|..+++|++|++++
T Consensus        14 ~~l~~s~n~l~~i-P~~~--~~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~   90 (220)
T 2v70_A           14 TTVDCSNQKLNKI-PEHI--PQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTS   90 (220)
T ss_dssp             TEEECCSSCCSSC-CSCC--CTTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred             CEeEeCCCCcccC-ccCC--CCCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCC
Confidence            3566666665532 2222  3445677777776665432 3456667777777777776655555666677777777777


Q ss_pred             CcccccCCccccCCCCCcEEeCCCCccccCCCcCCcCCCCCcEEEcCCCccCCcCCcccccCCCccEEEcCCcccc
Q 037302          269 NNLIGSIPPTIGYLTNLTSLNLGYNQLSSSIPPELMNCSQLQNLVLSHNTLSGIVPPEIGNLTHLRQLDLSHNFIN  344 (408)
Q Consensus       269 ~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~  344 (408)
                      |.+....+..+..+++|++|++++|.++...+..+..+++|++|++++|.+++..+..|..+++|+.|++++|++.
T Consensus        91 N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~  166 (220)
T 2v70_A           91 NRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPFN  166 (220)
T ss_dssp             SCCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCEE
T ss_pred             CccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCCc
Confidence            7766555555666777777777777777666666667777777777777776666666777777777777777665

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=99.70  E-value=6e-16  Score=131.34  Aligned_cols=155  Identities=29%  Similarity=0.320  Sum_probs=122.3

Q ss_pred             cCeEEccCCcCCCCCCcccCCCCCccEEEccCCcccccCCccccCCCCCCEEeCCCCcccccCCccccCCCCCcEEeCCC
Q 037302          213 GGKLDLSHNRLDSPIPPTIGNLTNLTSLDLSSNQLSGLLPREVGNLKYLDSLSLDGNNLIGSIPPTIGYLTNLTSLNLGY  292 (408)
Q Consensus       213 L~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~  292 (408)
                      .+.++.+++.+..+ |..+  .++|+.|++++|.+....+..+..+++|+.|++++|.+.......+..+++|++|++++
T Consensus        21 ~~~v~c~~~~l~~i-p~~~--~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~   97 (229)
T 3e6j_A           21 GTTVDCRSKRHASV-PAGI--PTNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGT   97 (229)
T ss_dssp             TTEEECTTSCCSSC-CSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred             CCEeEccCCCcCcc-CCCC--CCCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCC
Confidence            34566666655533 3222  27788888888888877677788888888888888888766666678888999999999


Q ss_pred             CccccCCCcCCcCCCCCcEEEcCCCccCCcCCcccccCCCccEEEcCCccccccCCcCCCCCCCccEEeCCCCccCCcC
Q 037302          293 NQLSSSIPPELMNCSQLQNLVLSHNTLSGIVPPEIGNLTHLRQLDLSHNFINGTIPSQLGYIPNISAVDLSKNNLSGVV  371 (408)
Q Consensus       293 ~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~  371 (408)
                      |.++...+..+..+++|++|++++|++. .++..+..+++|+.|++++|+++...+..+..+++|+.|++++|++....
T Consensus        98 N~l~~l~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c  175 (229)
T 3e6j_A           98 NQLTVLPSAVFDRLVHLKELFMCCNKLT-ELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNPWDCEC  175 (229)
T ss_dssp             SCCCCCCTTTTTTCTTCCEEECCSSCCC-SCCTTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCBCTTB
T ss_pred             CcCCccChhHhCcchhhCeEeccCCccc-ccCcccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCCccCCc
Confidence            9888776677788899999999999888 55677788899999999999988766677888899999999999887654

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=99.70  E-value=5.5e-17  Score=134.51  Aligned_cols=152  Identities=16%  Similarity=0.258  Sum_probs=73.5

Q ss_pred             ccccccCeEEccCCcCCCCCCcccCCCCCccEEEccCCcccccCCccccCCCCCCEEeCCCCcccccCCccccCCCCCcE
Q 037302          208 GYLNLGGKLDLSHNRLDSPIPPTIGNLTNLTSLDLSSNQLSGLLPREVGNLKYLDSLSLDGNNLIGSIPPTIGYLTNLTS  287 (408)
Q Consensus       208 ~~~~~L~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~  287 (408)
                      ..++.++.++++++.+... + .+..+++|++|++++|.+..  ...+..+++|++|++++|.+....+..+..+++|++
T Consensus        41 ~~l~~L~~L~l~~n~i~~l-~-~l~~l~~L~~L~l~~n~~~~--~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~  116 (197)
T 4ezg_A           41 AQMNSLTYITLANINVTDL-T-GIEYAHNIKDLTINNIHATN--YNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTL  116 (197)
T ss_dssp             HHHHTCCEEEEESSCCSCC-T-TGGGCTTCSEEEEESCCCSC--CGGGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCE
T ss_pred             hhcCCccEEeccCCCccCh-H-HHhcCCCCCEEEccCCCCCc--chhhhcCCCCCEEEeECCccCcccChhhcCCCCCCE
Confidence            3445555566655555422 2 34455555555555554331  123444555555555555554433444455555555


Q ss_pred             EeCCCCccccCCCcCCcCCCCCcEEEcCCCc-cCCcCCcccccCCCccEEEcCCccccccCCcCCCCCCCccEEeCCCCc
Q 037302          288 LNLGYNQLSSSIPPELMNCSQLQNLVLSHNT-LSGIVPPEIGNLTHLRQLDLSHNFINGTIPSQLGYIPNISAVDLSKNN  366 (408)
Q Consensus       288 L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~-~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~  366 (408)
                      |++++|.++...+..+..+++|++|++++|+ +...  ..+..+++|++|++++|++++. + .+..+++|+.|++++|+
T Consensus       117 L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~--~~l~~l~~L~~L~l~~n~i~~~-~-~l~~l~~L~~L~l~~N~  192 (197)
T 4ezg_A          117 LDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDI--MPLKTLPELKSLNIQFDGVHDY-R-GIEDFPKLNQLYAFSQT  192 (197)
T ss_dssp             EECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCCCC--GGGGGCSSCCEEECTTBCCCCC-T-TGGGCSSCCEEEECBC-
T ss_pred             EEecCCccCcHhHHHHhhCCCCCEEEccCCCCcccc--HhhcCCCCCCEEECCCCCCcCh-H-HhccCCCCCEEEeeCcc
Confidence            5555555554334444455555555555554 3322  1344455555555555555432 1 34444555555555554


Q ss_pred             c
Q 037302          367 L  367 (408)
Q Consensus       367 l  367 (408)
                      +
T Consensus       193 i  193 (197)
T 4ezg_A          193 I  193 (197)
T ss_dssp             -
T ss_pred             c
Confidence            4

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=99.70  E-value=4.8e-16  Score=131.91  Aligned_cols=155  Identities=22%  Similarity=0.281  Sum_probs=133.7

Q ss_pred             CCccEEEccCCcccccCCccccCCCCCCEEeCCCCcccccCCccccCCCCCcEEeCCCCccccCCCcCCcCCCCCcEEEc
Q 037302          235 TNLTSLDLSSNQLSGLLPREVGNLKYLDSLSLDGNNLIGSIPPTIGYLTNLTSLNLGYNQLSSSIPPELMNCSQLQNLVL  314 (408)
Q Consensus       235 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l  314 (408)
                      ...+.++.+++.+.. .+..+  .++|+.|+++++.+....+..+..+++|++|++++|.+....+..+..+++|++|++
T Consensus        19 Cs~~~v~c~~~~l~~-ip~~~--~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~L   95 (229)
T 3e6j_A           19 CSGTTVDCRSKRHAS-VPAGI--PTNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDL   95 (229)
T ss_dssp             EETTEEECTTSCCSS-CCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred             EeCCEeEccCCCcCc-cCCCC--CCCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEEC
Confidence            356778888887773 33333  389999999999998777888999999999999999998777677899999999999


Q ss_pred             CCCccCCcCCcccccCCCccEEEcCCccccccCCcCCCCCCCccEEeCCCCccCCcCCcccc---CCCeEEccCCccCCC
Q 037302          315 SHNTLSGIVPPEIGNLTHLRQLDLSHNFINGTIPSQLGYIPNISAVDLSKNNLSGVVPASVR---IIPKLIVSENNLELE  391 (408)
Q Consensus       315 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~---~l~~l~l~~n~~~~~  391 (408)
                      ++|+++...+..|..+++|++|++++|.++ .+|..+..+++|+.|++++|++..+.+..+.   ++++|++++|++.+.
T Consensus        96 s~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~  174 (229)
T 3e6j_A           96 GTNQLTVLPSAVFDRLVHLKELFMCCNKLT-ELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNPWDCE  174 (229)
T ss_dssp             CSSCCCCCCTTTTTTCTTCCEEECCSSCCC-SCCTTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCBCTT
T ss_pred             CCCcCCccChhHhCcchhhCeEeccCCccc-ccCcccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCCccCC
Confidence            999999887778899999999999999999 7788889999999999999999988876655   566999999999865


Q ss_pred             CC
Q 037302          392 NS  393 (408)
Q Consensus       392 ~~  393 (408)
                      .+
T Consensus       175 c~  176 (229)
T 3e6j_A          175 CR  176 (229)
T ss_dssp             BG
T ss_pred             cc
Confidence            43

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=99.70  E-value=8e-17  Score=133.51  Aligned_cols=151  Identities=19%  Similarity=0.274  Sum_probs=82.5

Q ss_pred             CCCCccEEEccCCcccccCCccccCCCCCCEEeCCCCcccccCCccccCCCCCcEEeCCCCccccCCCcCCcCCCCCcEE
Q 037302          233 NLTNLTSLDLSSNQLSGLLPREVGNLKYLDSLSLDGNNLIGSIPPTIGYLTNLTSLNLGYNQLSSSIPPELMNCSQLQNL  312 (408)
Q Consensus       233 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L  312 (408)
                      .+++|++|+++++.+.+ .+ .+..+++|++|++++|.+..  ...+..+++|++|++++|.++...+..+..+++|++|
T Consensus        42 ~l~~L~~L~l~~n~i~~-l~-~l~~l~~L~~L~l~~n~~~~--~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L  117 (197)
T 4ezg_A           42 QMNSLTYITLANINVTD-LT-GIEYAHNIKDLTINNIHATN--YNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLL  117 (197)
T ss_dssp             HHHTCCEEEEESSCCSC-CT-TGGGCTTCSEEEEESCCCSC--CGGGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEE
T ss_pred             hcCCccEEeccCCCccC-hH-HHhcCCCCCEEEccCCCCCc--chhhhcCCCCCEEEeECCccCcccChhhcCCCCCCEE
Confidence            34556666666665552 22 35555666666666664432  2345556666666666666654445555566666666


Q ss_pred             EcCCCccCCcCCcccccCCCccEEEcCCcc-ccccCCcCCCCCCCccEEeCCCCccCCcCC-ccccCCCeEEccCCccC
Q 037302          313 VLSHNTLSGIVPPEIGNLTHLRQLDLSHNF-INGTIPSQLGYIPNISAVDLSKNNLSGVVP-ASVRIIPKLIVSENNLE  389 (408)
Q Consensus       313 ~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~-~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~-~~~~~l~~l~l~~n~~~  389 (408)
                      ++++|.+++..+..+..+++|++|++++|. ++ .++ .+..+++|+.|++++|++.+..+ ..+.++++|++++|++.
T Consensus       118 ~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~-~~~-~l~~l~~L~~L~l~~n~i~~~~~l~~l~~L~~L~l~~N~i~  194 (197)
T 4ezg_A          118 DISHSAHDDSILTKINTLPKVNSIDLSYNGAIT-DIM-PLKTLPELKSLNIQFDGVHDYRGIEDFPKLNQLYAFSQTIG  194 (197)
T ss_dssp             ECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCC-CCG-GGGGCSSCCEEECTTBCCCCCTTGGGCSSCCEEEECBC---
T ss_pred             EecCCccCcHhHHHHhhCCCCCEEEccCCCCcc-ccH-hhcCCCCCCEEECCCCCCcChHHhccCCCCCEEEeeCcccC
Confidence            666666654444555566666666666665 44 223 35556666666666666655432 33445556666666653

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}

Probab=99.68  E-value=5.7e-16  Score=147.86  Aligned_cols=187  Identities=29%  Similarity=0.379  Sum_probs=117.4

Q ss_pred             CCCEEEcCCCcCCCCCCccccCCCCCCEEEecCcccccccCcccccccccCeEEccCCcCCCCCCcccCCCCCccEEEcc
Q 037302          164 QLSNLYLAYNNLVGPLPKEVGNMKNLDSLLLNRNSLTGPIPSTIGYLNLGGKLDLSHNRLDSPIPPTIGNLTNLTSLDLS  243 (408)
Q Consensus       164 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~  243 (408)
                      +++.|+++++.+.. ++..+  .++|+.|++++|.+.. ++   ..+++|+.|++++|.+.. ++. +..  +|++|+++
T Consensus        60 ~L~~L~Ls~n~L~~-lp~~l--~~~L~~L~Ls~N~l~~-ip---~~l~~L~~L~Ls~N~l~~-ip~-l~~--~L~~L~Ls  128 (571)
T 3cvr_A           60 QFSELQLNRLNLSS-LPDNL--PPQITVLEITQNALIS-LP---ELPASLEYLDACDNRLST-LPE-LPA--SLKHLDVD  128 (571)
T ss_dssp             TCSEEECCSSCCSC-CCSCC--CTTCSEEECCSSCCSC-CC---CCCTTCCEEECCSSCCSC-CCC-CCT--TCCEEECC
T ss_pred             CccEEEeCCCCCCc-cCHhH--cCCCCEEECcCCCCcc-cc---cccCCCCEEEccCCCCCC-cch-hhc--CCCEEECC
Confidence            56666666665543 23222  2556666666666552 22   335666777777666655 333 333  67777777


Q ss_pred             CCcccccCCccccCCCCCCEEeCCCCcccccCCccccCCCCCcEEeCCCCccccCCCcCCcCCCCCcEEEcCCCccCCcC
Q 037302          244 SNQLSGLLPREVGNLKYLDSLSLDGNNLIGSIPPTIGYLTNLTSLNLGYNQLSSSIPPELMNCSQLQNLVLSHNTLSGIV  323 (408)
Q Consensus       244 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~  323 (408)
                      +|.++. .+.   .+++|+.|++++|.+.. ++.   .+++|++|++++|.++. ++. +.  ++|+.|++++|.++. +
T Consensus       129 ~N~l~~-lp~---~l~~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~L~~-lp~-l~--~~L~~L~Ls~N~L~~-l  195 (571)
T 3cvr_A          129 NNQLTM-LPE---LPALLEYINADNNQLTM-LPE---LPTSLEVLSVRNNQLTF-LPE-LP--ESLEALDVSTNLLES-L  195 (571)
T ss_dssp             SSCCSC-CCC---CCTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSC-CCC-CC--TTCCEEECCSSCCSS-C
T ss_pred             CCcCCC-CCC---cCccccEEeCCCCccCc-CCC---cCCCcCEEECCCCCCCC-cch-hh--CCCCEEECcCCCCCc-h
Confidence            777664 222   45777777777777664 222   45677888888877775 343 44  778888888887763 3


Q ss_pred             CcccccCCCc-------cEEEcCCccccccCCcCCCCCCCccEEeCCCCccCCcCCccccCC
Q 037302          324 PPEIGNLTHL-------RQLDLSHNFINGTIPSQLGYIPNISAVDLSKNNLSGVVPASVRII  378 (408)
Q Consensus       324 ~~~~~~~~~L-------~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~l  378 (408)
                      +. +..  +|       +.|++++|+++ .+|..+..+++|+.|++++|++.+..|..+..+
T Consensus       196 p~-~~~--~L~~~~~~L~~L~Ls~N~l~-~lp~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l  253 (571)
T 3cvr_A          196 PA-VPV--RNHHSEETEIFFRCRENRIT-HIPENILSLDPTCTIILEDNPLSSRIRESLSQQ  253 (571)
T ss_dssp             CC-CC----------CCEEEECCSSCCC-CCCGGGGGSCTTEEEECCSSSCCHHHHHHHHHH
T ss_pred             hh-HHH--hhhcccccceEEecCCCcce-ecCHHHhcCCCCCEEEeeCCcCCCcCHHHHHHh
Confidence            33 433  56       88888888887 456666668888888888888887777665543

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=99.68  E-value=1.8e-16  Score=144.26  Aligned_cols=156  Identities=31%  Similarity=0.258  Sum_probs=81.9

Q ss_pred             cCeEEccCCcCCCCCCcccC-CCCCccEEEccCCcccccCCccccCCCCCCEEeCCCCcccccCCccccCCCCCcEEeCC
Q 037302          213 GGKLDLSHNRLDSPIPPTIG-NLTNLTSLDLSSNQLSGLLPREVGNLKYLDSLSLDGNNLIGSIPPTIGYLTNLTSLNLG  291 (408)
Q Consensus       213 L~~l~l~~~~~~~~~~~~l~-~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~  291 (408)
                      ++.|++++|.+....+..+. .+++|+.|++++|.+....+..|..+++|+.|++++|.+.......+..+++|++|+++
T Consensus        41 l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~  120 (361)
T 2xot_A           41 TALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNHLHTLDEFLFSDLQALEVLLLY  120 (361)
T ss_dssp             CSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECC
T ss_pred             CCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCCCcCCcCCHHHhCCCcCCCEEECC
Confidence            44455555544444444444 45555555555555554444445555555555555555554444445555556666666


Q ss_pred             CCccccCCCcCCcCCCCCcEEEcCCCccCCcCCccc---ccCCCccEEEcCCccccccCCcCCCCCCC--ccEEeCCCCc
Q 037302          292 YNQLSSSIPPELMNCSQLQNLVLSHNTLSGIVPPEI---GNLTHLRQLDLSHNFINGTIPSQLGYIPN--ISAVDLSKNN  366 (408)
Q Consensus       292 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~---~~~~~L~~L~l~~~~~~~~~~~~~~~~~~--L~~L~l~~~~  366 (408)
                      +|.+....+..+..+++|+.|++++|.+..+....+   ..+++|+.|++++|+++...+..+..++.  ++.|++++|+
T Consensus       121 ~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~~~l~~l~l~~N~  200 (361)
T 2xot_A          121 NNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLKKLPLTDLQKLPAWVKNGLYLHNNP  200 (361)
T ss_dssp             SSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCSSCCCCCCHHHHHHSCHHHHTTEECCSSC
T ss_pred             CCcccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCCCCCccCHHHhhhccHhhcceEEecCCC
Confidence            665555545555555666666666665554333333   34556666666666665443344444444  3556666665


Q ss_pred             cC
Q 037302          367 LS  368 (408)
Q Consensus       367 l~  368 (408)
                      +.
T Consensus       201 ~~  202 (361)
T 2xot_A          201 LE  202 (361)
T ss_dssp             EE
T ss_pred             cc
Confidence            54

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}

Probab=99.68  E-value=3.5e-16  Score=149.26  Aligned_cols=188  Identities=25%  Similarity=0.350  Sum_probs=149.1

Q ss_pred             CCCCEEEecCcccccccCcccccccccCeEEccCCcCCCCCCcccCCCCCccEEEccCCcccccCCccccCCCCCCEEeC
Q 037302          187 KNLDSLLLNRNSLTGPIPSTIGYLNLGGKLDLSHNRLDSPIPPTIGNLTNLTSLDLSSNQLSGLLPREVGNLKYLDSLSL  266 (408)
Q Consensus       187 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l  266 (408)
                      .+++.|+++++.+.+ ++..+  +++|+.|++++|.+.. ++   ..+++|+.|++++|.++. .+. +..  +|+.|++
T Consensus        59 ~~L~~L~Ls~n~L~~-lp~~l--~~~L~~L~Ls~N~l~~-ip---~~l~~L~~L~Ls~N~l~~-ip~-l~~--~L~~L~L  127 (571)
T 3cvr_A           59 NQFSELQLNRLNLSS-LPDNL--PPQITVLEITQNALIS-LP---ELPASLEYLDACDNRLST-LPE-LPA--SLKHLDV  127 (571)
T ss_dssp             TTCSEEECCSSCCSC-CCSCC--CTTCSEEECCSSCCSC-CC---CCCTTCCEEECCSSCCSC-CCC-CCT--TCCEEEC
T ss_pred             CCccEEEeCCCCCCc-cCHhH--cCCCCEEECcCCCCcc-cc---cccCCCCEEEccCCCCCC-cch-hhc--CCCEEEC
Confidence            389999999999876 44333  4789999999999884 34   457899999999999986 444 443  9999999


Q ss_pred             CCCcccccCCccccCCCCCcEEeCCCCccccCCCcCCcCCCCCcEEEcCCCccCCcCCcccccCCCccEEEcCCcccccc
Q 037302          267 DGNNLIGSIPPTIGYLTNLTSLNLGYNQLSSSIPPELMNCSQLQNLVLSHNTLSGIVPPEIGNLTHLRQLDLSHNFINGT  346 (408)
Q Consensus       267 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~  346 (408)
                      ++|.+.. ++.   .+++|++|++++|.++. ++.   .+++|++|++++|++++ ++. +.  ++|+.|++++|.++ .
T Consensus       128 s~N~l~~-lp~---~l~~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~L~~-lp~-l~--~~L~~L~Ls~N~L~-~  194 (571)
T 3cvr_A          128 DNNQLTM-LPE---LPALLEYINADNNQLTM-LPE---LPTSLEVLSVRNNQLTF-LPE-LP--ESLEALDVSTNLLE-S  194 (571)
T ss_dssp             CSSCCSC-CCC---CCTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSC-CCC-CC--TTCCEEECCSSCCS-S
T ss_pred             CCCcCCC-CCC---cCccccEEeCCCCccCc-CCC---cCCCcCEEECCCCCCCC-cch-hh--CCCCEEECcCCCCC-c
Confidence            9999886 333   68999999999999985 443   57899999999999986 444 55  89999999999999 6


Q ss_pred             CCcCCCCCCCc-------cEEeCCCCccCCcCCcc--ccCCCeEEccCCccCCCCCCCcCCCCC
Q 037302          347 IPSQLGYIPNI-------SAVDLSKNNLSGVVPAS--VRIIPKLIVSENNLELENSTSSENAPP  401 (408)
Q Consensus       347 ~~~~~~~~~~L-------~~L~l~~~~l~~~~~~~--~~~l~~l~l~~n~~~~~~~~~~~~~~~  401 (408)
                      +|. +..  +|       +.|++++|+++.+.+..  +.++++|++++|++++.+|..+..++.
T Consensus       195 lp~-~~~--~L~~~~~~L~~L~Ls~N~l~~lp~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~  255 (571)
T 3cvr_A          195 LPA-VPV--RNHHSEETEIFFRCRENRITHIPENILSLDPTCTIILEDNPLSSRIRESLSQQTA  255 (571)
T ss_dssp             CCC-CC----------CCEEEECCSSCCCCCCGGGGGSCTTEEEECCSSSCCHHHHHHHHHHHH
T ss_pred             hhh-HHH--hhhcccccceEEecCCCcceecCHHHhcCCCCCEEEeeCCcCCCcCHHHHHHhhc
Confidence            665 543  77       99999999999754322  335669999999999999988777543

>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}

Probab=99.67  E-value=9.7e-15  Score=134.49  Aligned_cols=329  Identities=9%  Similarity=0.086  Sum_probs=187.6

Q ss_pred             hhccCC-CCcEEeCCCCcCCCCCcccccCCCCCcEEeCCCce---ecccCcccccCCCCCceeecCCccccccCCCcCCC
Q 037302           38 EIGALS-KLEELALPYNSLTGTIPAEIGSLRNLVELDLSNNI---LNGSIPLEFGNLKDLDALRLRGNKLDGLIPSSIGN  113 (408)
Q Consensus        38 ~~~~~~-~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~---~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~l~~  113 (408)
                      +|..+. .|+++.+..+ ++.+...+|.+|.+|+.+.+..+.   +..+...+|.+|.+|+.+.+..+ ++.+....|..
T Consensus        58 aF~~~~~~L~sI~iP~s-vt~Ig~~AF~~C~~L~~i~~~~n~p~~l~~Ig~~aF~~c~~L~~i~~~~~-~~~I~~~aF~~  135 (394)
T 4gt6_A           58 VFCNYKYVLTSVQIPDT-VTEIGSNAFYNCTSLKRVTIQDNKPSCVKKIGRQAFMFCSELTDIPILDS-VTEIDSEAFHH  135 (394)
T ss_dssp             TTTTCCSCCCEEEECTT-CCEECTTTTTTCTTCCEEEEGGGCCCCCCEECTTTTTTCTTCCBCGGGTT-CSEECTTTTTT
T ss_pred             hccCCCCcCEEEEECCC-eeEEhHHHhhCCccCceEeecCCCCCeeeEechhhchhcccceeeccCCc-cceehhhhhhh
Confidence            455553 4677777644 444556667777777777665432   33344555666666666666544 34455556666


Q ss_pred             CCCCCEEEcCCCeecccCcccccCCCCCceEeccCCcccCcCchhhccCCCCCEEEcCCCcCCCCCCccccCCCCCCEEE
Q 037302          114 LTNLTHLDLSLNQLSGRLPQEVGNLKNLLSLFLDNNNLTGPIPSTLYHLNQLSNLYLAYNNLVGPLPKEVGNMKNLDSLL  193 (408)
Q Consensus       114 l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~  193 (408)
                      +.+|+.+.+.... ..+...++..+..|+.+.+..+ +..+...+|. ...|+.+.+..... .....++..+.++....
T Consensus       136 c~~L~~i~lp~~~-~~I~~~~F~~c~~L~~i~~~~~-~~~I~~~aF~-~~~l~~i~ip~~~~-~i~~~af~~c~~l~~~~  211 (394)
T 4gt6_A          136 CEELDTVTIPEGV-TSVADGMFSYCYSLHTVTLPDS-VTAIEERAFT-GTALTQIHIPAKVT-RIGTNAFSECFALSTIT  211 (394)
T ss_dssp             CTTCCEEECCTTC-CEECTTTTTTCTTCCEEECCTT-CCEECTTTTT-TCCCSEEEECTTCC-EECTTTTTTCTTCCEEE
T ss_pred             hccccccccccee-eeecccceecccccccccccce-eeEecccccc-ccceeEEEECCccc-ccccchhhhccccceec
Confidence            6677766665432 2234455666666666666543 2223333443 24566666544321 12234455566665555


Q ss_pred             ecCcccccccCcccccccccCeEEccCCcCCCCCCcccCCCCCccEEEccCCcccccCCccccCCCCCCEEeCCCCcccc
Q 037302          194 LNRNSLTGPIPSTIGYLNLGGKLDLSHNRLDSPIPPTIGNLTNLTSLDLSSNQLSGLLPREVGNLKYLDSLSLDGNNLIG  273 (408)
Q Consensus       194 l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~  273 (408)
                      .............+...... ...+          ........+..+.+.. .+......+|..+..|+.+.+...... 
T Consensus       212 ~~~~~~~~~~~~~~~~~~~~-~~~~----------~~~~~~~~~~~~~ip~-~v~~i~~~aF~~c~~L~~i~lp~~~~~-  278 (394)
T 4gt6_A          212 SDSESYPAIDNVLYEKSANG-DYAL----------IRYPSQREDPAFKIPN-GVARIETHAFDSCAYLASVKMPDSVVS-  278 (394)
T ss_dssp             ECCSSSCBSSSCEEEECTTS-CEEE----------EECCTTCCCSEEECCT-TEEEECTTTTTTCSSCCEEECCTTCCE-
T ss_pred             ccccccccccceeecccccc-cccc----------cccccccccceEEcCC-cceEcccceeeecccccEEecccccce-
Confidence            44332211100001100000 0000          0111223455555543 233355667888999999999765432 


Q ss_pred             cCCccccCCCCCcEEeCCCCccccCCCcCCcCCCCCcEEEcCCCccCCcCCcccccCCCccEEEcCCccccccCCcCCCC
Q 037302          274 SIPPTIGYLTNLTSLNLGYNQLSSSIPPELMNCSQLQNLVLSHNTLSGIVPPEIGNLTHLRQLDLSHNFINGTIPSQLGY  353 (408)
Q Consensus       274 ~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~  353 (408)
                      ....++.++++|+.+.+.. .+......+|.+|.+|+.+.+..+ ++.+...+|.+|.+|+.+.+..+ ++.....+|.+
T Consensus       279 I~~~aF~~c~~L~~i~l~~-~i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~C~~L~~i~ip~s-v~~I~~~aF~~  355 (394)
T 4gt6_A          279 IGTGAFMNCPALQDIEFSS-RITELPESVFAGCISLKSIDIPEG-ITQILDDAFAGCEQLERIAIPSS-VTKIPESAFSN  355 (394)
T ss_dssp             ECTTTTTTCTTCCEEECCT-TCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEECTT-CCBCCGGGGTT
T ss_pred             ecCcccccccccccccCCC-cccccCceeecCCCCcCEEEeCCc-ccEehHhHhhCCCCCCEEEECcc-cCEEhHhHhhC
Confidence            4556788899999999964 455567778999999999999764 55577789999999999999765 66567788999


Q ss_pred             CCCccEEeCCCCccCCcCCccccCCCeEEccCCcc
Q 037302          354 IPNISAVDLSKNNLSGVVPASVRIIPKLIVSENNL  388 (408)
Q Consensus       354 ~~~L~~L~l~~~~l~~~~~~~~~~l~~l~l~~n~~  388 (408)
                      |.+|+.+++.++......-....+|+.+.+..+.+
T Consensus       356 C~~L~~i~~~~~~~~~~~~~~~~~L~~i~i~~~~~  390 (394)
T 4gt6_A          356 CTALNNIEYSGSRSQWNAISTDSGLQNLPVAPGSI  390 (394)
T ss_dssp             CTTCCEEEESSCHHHHHTCBCCCCC----------
T ss_pred             CCCCCEEEECCceeehhhhhccCCCCEEEeCCCCE
Confidence            99999999998865422222223455666655443

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=99.65  E-value=2.5e-16  Score=136.54  Aligned_cols=170  Identities=22%  Similarity=0.273  Sum_probs=109.8

Q ss_pred             CCCCCEEEcCCCcCCCCCCccccCCCCCCEEEecCcccccccCcccccccccCeEEccCCcCCCCCCcccCCCCCccEEE
Q 037302          162 LNQLSNLYLAYNNLVGPLPKEVGNMKNLDSLLLNRNSLTGPIPSTIGYLNLGGKLDLSHNRLDSPIPPTIGNLTNLTSLD  241 (408)
Q Consensus       162 ~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~l~~~~~L~~L~  241 (408)
                      +.++..+.+.++.+.+..  .+..+++|+.|++++|.+.+. + .+..++.|+.|++++|.+....+  +..+++|+.|+
T Consensus        18 l~~l~~l~l~~~~i~~~~--~~~~l~~L~~L~l~~n~i~~l-~-~l~~l~~L~~L~L~~N~i~~~~~--l~~l~~L~~L~   91 (263)
T 1xeu_A           18 LANAVKQNLGKQSVTDLV--SQKELSGVQNFNGDNSNIQSL-A-GMQFFTNLKELHLSHNQISDLSP--LKDLTKLEELS   91 (263)
T ss_dssp             HHHHHHHHHTCSCTTSEE--CHHHHTTCSEEECTTSCCCCC-T-TGGGCTTCCEEECCSSCCCCCGG--GTTCSSCCEEE
T ss_pred             HHHHHHHHhcCCCccccc--chhhcCcCcEEECcCCCcccc-h-HHhhCCCCCEEECCCCccCCChh--hccCCCCCEEE
Confidence            344555566666654322  356677888888888776643 2 56667777777777777765433  66777777777


Q ss_pred             ccCCcccccCCccccCCCCCCEEeCCCCcccccCCccccCCCCCcEEeCCCCccccCCCcCCcCCCCCcEEEcCCCccCC
Q 037302          242 LSSNQLSGLLPREVGNLKYLDSLSLDGNNLIGSIPPTIGYLTNLTSLNLGYNQLSSSIPPELMNCSQLQNLVLSHNTLSG  321 (408)
Q Consensus       242 l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~  321 (408)
                      +++|.+.+...  +.. ++|+.|++++|.+...  ..+..+++|++|++++|.+++.  ..+..+++|++|++++|++.+
T Consensus        92 L~~N~l~~l~~--~~~-~~L~~L~L~~N~l~~~--~~l~~l~~L~~L~Ls~N~i~~~--~~l~~l~~L~~L~L~~N~i~~  164 (263)
T 1xeu_A           92 VNRNRLKNLNG--IPS-ACLSRLFLDNNELRDT--DSLIHLKNLEILSIRNNKLKSI--VMLGFLSKLEVLDLHGNEITN  164 (263)
T ss_dssp             CCSSCCSCCTT--CCC-SSCCEEECCSSCCSBS--GGGTTCTTCCEEECTTSCCCBC--GGGGGCTTCCEEECTTSCCCB
T ss_pred             CCCCccCCcCc--ccc-CcccEEEccCCccCCC--hhhcCcccccEEECCCCcCCCC--hHHccCCCCCEEECCCCcCcc
Confidence            77777664322  222 6777777777766543  3466677777777777777643  246667777777777777764


Q ss_pred             cCCcccccCCCccEEEcCCcccccc
Q 037302          322 IVPPEIGNLTHLRQLDLSHNFINGT  346 (408)
Q Consensus       322 ~~~~~~~~~~~L~~L~l~~~~~~~~  346 (408)
                      .  ..+..+++|+.|++++|+++..
T Consensus       165 ~--~~l~~l~~L~~L~l~~N~~~~~  187 (263)
T 1xeu_A          165 T--GGLTRLKKVNWIDLTGQKCVNE  187 (263)
T ss_dssp             C--TTSTTCCCCCEEEEEEEEEECC
T ss_pred             h--HHhccCCCCCEEeCCCCcccCC
Confidence            4  5566677777777777776644

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=99.63  E-value=6.9e-16  Score=133.78  Aligned_cols=170  Identities=23%  Similarity=0.251  Sum_probs=124.8

Q ss_pred             CCCCcEEEcCCCccccccchhhccCCCCcEEeCCCCcCCCCCcccccCCCCCcEEeCCCceecccCcccccCCCCCceee
Q 037302           18 FPNLESIIIPYTLLSGRIPSEIGALSKLEELALPYNSLTGTIPAEIGSLRNLVELDLSNNILNGSIPLEFGNLKDLDALR   97 (408)
Q Consensus        18 ~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~   97 (408)
                      +.+++.+++.++.+.+. + .+..+++|++|++++|.++.. + .+..+++|+.|++++|.+.+..+  +..+++|++|+
T Consensus        18 l~~l~~l~l~~~~i~~~-~-~~~~l~~L~~L~l~~n~i~~l-~-~l~~l~~L~~L~L~~N~i~~~~~--l~~l~~L~~L~   91 (263)
T 1xeu_A           18 LANAVKQNLGKQSVTDL-V-SQKELSGVQNFNGDNSNIQSL-A-GMQFFTNLKELHLSHNQISDLSP--LKDLTKLEELS   91 (263)
T ss_dssp             HHHHHHHHHTCSCTTSE-E-CHHHHTTCSEEECTTSCCCCC-T-TGGGCTTCCEEECCSSCCCCCGG--GTTCSSCCEEE
T ss_pred             HHHHHHHHhcCCCcccc-c-chhhcCcCcEEECcCCCcccc-h-HHhhCCCCCEEECCCCccCCChh--hccCCCCCEEE
Confidence            44566667777766633 2 467788888888888877643 3 67778888888888888775443  77888888888


Q ss_pred             cCCccccccCCCcCCCCCCCCEEEcCCCeecccCcccccCCCCCceEeccCCcccCcCchhhccCCCCCEEEcCCCcCCC
Q 037302           98 LRGNKLDGLIPSSIGNLTNLTHLDLSLNQLSGRLPQEVGNLKNLLSLFLDNNNLTGPIPSTLYHLNQLSNLYLAYNNLVG  177 (408)
Q Consensus        98 l~~~~i~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~  177 (408)
                      +++|.++.+.+  +.. ++|++|++++|.+...  ..+..+++|+.|++++|.++..  ..+..+++|+.|++++|.+..
T Consensus        92 L~~N~l~~l~~--~~~-~~L~~L~L~~N~l~~~--~~l~~l~~L~~L~Ls~N~i~~~--~~l~~l~~L~~L~L~~N~i~~  164 (263)
T 1xeu_A           92 VNRNRLKNLNG--IPS-ACLSRLFLDNNELRDT--DSLIHLKNLEILSIRNNKLKSI--VMLGFLSKLEVLDLHGNEITN  164 (263)
T ss_dssp             CCSSCCSCCTT--CCC-SSCCEEECCSSCCSBS--GGGTTCTTCCEEECTTSCCCBC--GGGGGCTTCCEEECTTSCCCB
T ss_pred             CCCCccCCcCc--ccc-CcccEEEccCCccCCC--hhhcCcccccEEECCCCcCCCC--hHHccCCCCCEEECCCCcCcc
Confidence            88888775433  233 7888888888887743  3577888888888888887754  357778888888888888765


Q ss_pred             CCCccccCCCCCCEEEecCcccccc
Q 037302          178 PLPKEVGNMKNLDSLLLNRNSLTGP  202 (408)
Q Consensus       178 ~~~~~~~~~~~L~~L~l~~~~~~~~  202 (408)
                      .  ..+..+++|+.|++++|.+...
T Consensus       165 ~--~~l~~l~~L~~L~l~~N~~~~~  187 (263)
T 1xeu_A          165 T--GGLTRLKKVNWIDLTGQKCVNE  187 (263)
T ss_dssp             C--TTSTTCCCCCEEEEEEEEEECC
T ss_pred             h--HHhccCCCCCEEeCCCCcccCC
Confidence            4  5577788888888888877643

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=99.62  E-value=3.1e-15  Score=123.21  Aligned_cols=131  Identities=25%  Similarity=0.365  Sum_probs=82.6

Q ss_pred             cEEEccCCcccccCCccccCCCCCCEEeCCCCcccccCCc-cccCCCCCcEEeCCCCccccCCCcCCcCCCCCcEEEcCC
Q 037302          238 TSLDLSSNQLSGLLPREVGNLKYLDSLSLDGNNLIGSIPP-TIGYLTNLTSLNLGYNQLSSSIPPELMNCSQLQNLVLSH  316 (408)
Q Consensus       238 ~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~-~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~  316 (408)
                      +.++++++.+.. .+..+.  +++++|+++++.+....+. .+..+++|++|++++|.++...+..+.++++|++|++++
T Consensus        11 ~~l~~s~~~l~~-ip~~~~--~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~   87 (192)
T 1w8a_A           11 TTVDCTGRGLKE-IPRDIP--LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGE   87 (192)
T ss_dssp             TEEECTTSCCSS-CCSCCC--TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCS
T ss_pred             CEEEcCCCCcCc-CccCCC--CCCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCC
Confidence            455555555542 222221  2566666666665544332 356666777777777777666566666677777777777


Q ss_pred             CccCCcCCcccccCCCccEEEcCCccccccCCcCCCCCCCccEEeCCCCccCCcC
Q 037302          317 NTLSGIVPPEIGNLTHLRQLDLSHNFINGTIPSQLGYIPNISAVDLSKNNLSGVV  371 (408)
Q Consensus       317 ~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~  371 (408)
                      |++++..+..|..+++|++|++++|++++..|..+..+++|+.|++++|++.+..
T Consensus        88 N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c  142 (192)
T 1w8a_A           88 NKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCNC  142 (192)
T ss_dssp             CCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCCSG
T ss_pred             CcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCccCcC
Confidence            7776666666666777777777777777666666777777777777777776543

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=99.59  E-value=2.5e-15  Score=121.13  Aligned_cols=89  Identities=25%  Similarity=0.253  Sum_probs=38.6

Q ss_pred             cCCCCCcEEeCCCCccccCCCcCCcCCCCCcEEEcCCCccCCcCCcccccCCCccEEEcCCccccccC-CcCCCCCCCcc
Q 037302          280 GYLTNLTSLNLGYNQLSSSIPPELMNCSQLQNLVLSHNTLSGIVPPEIGNLTHLRQLDLSHNFINGTI-PSQLGYIPNIS  358 (408)
Q Consensus       280 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~-~~~~~~~~~L~  358 (408)
                      ..+++|++|++++|.++..  ..+..+++|++|++++|.+.+..+..+..+++|+.|++++|.+++.. +..+..+++|+
T Consensus        46 ~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~l~~l~~L~  123 (168)
T 2ell_A           46 AEFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLNLSGNKLKDISTLEPLKKLECLK  123 (168)
T ss_dssp             GGGGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEEECBSSSCCSSGGGGGGSSCSCCC
T ss_pred             HhCCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEEeccCCccCcchhHHHHhcCCCCC
Confidence            3444444444444444422  33444444444444444444333333333444444444444444321 13344444444


Q ss_pred             EEeCCCCccCCc
Q 037302          359 AVDLSKNNLSGV  370 (408)
Q Consensus       359 ~L~l~~~~l~~~  370 (408)
                      .|++++|++.+.
T Consensus       124 ~L~l~~N~l~~~  135 (168)
T 2ell_A          124 SLDLFNCEVTNL  135 (168)
T ss_dssp             EEECCSSGGGTS
T ss_pred             EEEeeCCcCcch
Confidence            444444444443

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=99.57  E-value=5.8e-15  Score=118.97  Aligned_cols=130  Identities=23%  Similarity=0.272  Sum_probs=63.4

Q ss_pred             CCCcEEEcCCCccc-cccchhhccCCCCcEEeCCCCcCCCCCcccccCCCCCcEEeCCCceecccCcccccCCCCCceee
Q 037302           19 PNLESIIIPYTLLS-GRIPSEIGALSKLEELALPYNSLTGTIPAEIGSLRNLVELDLSNNILNGSIPLEFGNLKDLDALR   97 (408)
Q Consensus        19 ~~L~~L~l~~~~~~-~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~   97 (408)
                      ++|++|++++|.+. +.++..+..+++|++|++++|.++..  ..+..+++|++|++++|.+....+..+..+++|++|+
T Consensus        24 ~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~  101 (168)
T 2ell_A           24 AAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLN  101 (168)
T ss_dssp             TSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEEE
T ss_pred             ccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEEe
Confidence            45566666655554 34444455555555555555555433  4455555555555555555533444444455555555


Q ss_pred             cCCccccccCC-CcCCCCCCCCEEEcCCCeecccCc---ccccCCCCCceEeccCCc
Q 037302           98 LRGNKLDGLIP-SSIGNLTNLTHLDLSLNQLSGRLP---QEVGNLKNLLSLFLDNNN  150 (408)
Q Consensus        98 l~~~~i~~~~~-~~l~~l~~L~~L~l~~~~~~~~~~---~~~~~l~~L~~L~l~~~~  150 (408)
                      +++|.++.+.. ..+..+++|++|++++|.+....+   ..+..+++|++|++.++.
T Consensus       102 Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~  158 (168)
T 2ell_A          102 LSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDRE  158 (168)
T ss_dssp             CBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETT
T ss_pred             ccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCC
Confidence            55555443321 334444444444444444442222   233444444444444443

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=99.56  E-value=1.3e-14  Score=119.39  Aligned_cols=176  Identities=23%  Similarity=0.281  Sum_probs=120.9

Q ss_pred             CeEEccCCcCCCCCCcccCCCCCccEEEccCCcccccCCc-cccCCCCCCEEeCCCCcccccCCccccCCCCCcEEeCCC
Q 037302          214 GKLDLSHNRLDSPIPPTIGNLTNLTSLDLSSNQLSGLLPR-EVGNLKYLDSLSLDGNNLIGSIPPTIGYLTNLTSLNLGY  292 (408)
Q Consensus       214 ~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~-~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~  292 (408)
                      +.++++++.+.. +|..+.  .++++|+++++.+....+. .+..+++|+.|++++|.+....+..+..+++|++|++++
T Consensus        11 ~~l~~s~~~l~~-ip~~~~--~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~   87 (192)
T 1w8a_A           11 TTVDCTGRGLKE-IPRDIP--LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGE   87 (192)
T ss_dssp             TEEECTTSCCSS-CCSCCC--TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCS
T ss_pred             CEEEcCCCCcCc-CccCCC--CCCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCC
Confidence            466677666653 333332  3788888888877755443 477788888888888888766677788888888888888


Q ss_pred             CccccCCCcCCcCCCCCcEEEcCCCccCCcCCcccccCCCccEEEcCCccccccCCcCCCCCCCccEEeCCCCccCCcCC
Q 037302          293 NQLSSSIPPELMNCSQLQNLVLSHNTLSGIVPPEIGNLTHLRQLDLSHNFINGTIPSQLGYIPNISAVDLSKNNLSGVVP  372 (408)
Q Consensus       293 ~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~  372 (408)
                      |.++...+..+..+++|++|++++|++++..+..+..+++|++|++++|++....+-. .....++...+.++......|
T Consensus        88 N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c~l~-~~~~~l~~~~~~~~~~~C~~P  166 (192)
T 1w8a_A           88 NKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCNCHLA-WFAEWLRKKSLNGGAARCGAP  166 (192)
T ss_dssp             CCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCCSGGGH-HHHHHHHHHCCSGGGCBBCSS
T ss_pred             CcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCccCcCcch-HHHHHHHHcCCCCCCCCCCCC
Confidence            8888777777888888888888888888777788888888888888888887432210 000112323344455555566


Q ss_pred             ccccCCCeEEccCCccCCCCC
Q 037302          373 ASVRIIPKLIVSENNLELENS  393 (408)
Q Consensus       373 ~~~~~l~~l~l~~n~~~~~~~  393 (408)
                      ..+......++..+.+....+
T Consensus       167 ~~l~~~~l~~l~~~~~~C~~~  187 (192)
T 1w8a_A          167 SKVRDVQIKDLPHSEFKCSSE  187 (192)
T ss_dssp             TTTTTSBGGGSCTTTCCCCCC
T ss_pred             hHHcCCChhhCcHhhcCcCCC
Confidence            666666666666666654433

>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}

Probab=99.56  E-value=1.7e-12  Score=119.00  Aligned_cols=306  Identities=11%  Similarity=0.063  Sum_probs=163.4

Q ss_pred             ccCCCCCCcEEEcCCCccccccchhhccCCCCcEEeCCCCcCCCCCcccccCCCCCcEEeCCCceecccCcccccCCCCC
Q 037302           14 NFTCFPNLESIIIPYTLLSGRIPSEIGALSKLEELALPYNSLTGTIPAEIGSLRNLVELDLSNNILNGSIPLEFGNLKDL   93 (408)
Q Consensus        14 ~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L   93 (408)
                      +|....+|+.+.+... +...-..+|..|.+|+.+.+..+ ++.+...+|.++ +|+.+.+..+ +..+...+|..+ +|
T Consensus        41 ~~~~~~~i~~v~ip~~-vt~Ig~~aF~~C~~L~~I~lp~~-v~~Ig~~aF~~c-~l~~i~~~~~-l~~I~~~aF~~~-~L  115 (379)
T 4h09_A           41 WYKDRDRISEVRVNSG-ITSIGEANFNSCYNMTKVTVAST-VTSIGDGAFADT-KLQSYTGMER-VKKFGDYVFQGT-DL  115 (379)
T ss_dssp             TGGGGGGCSEEEECTT-EEEECTTTTTTCTTCCEEEECTT-CCEECTTTTTTC-CCCEEEECTT-CCEECTTTTTTC-CC
T ss_pred             ccccccCCEEEEeCCC-ccChHHHHhhCCCCCCEEEeCCc-ceEechhhhcCC-CCceEECCce-eeEeccceeccC-Cc
Confidence            3444455555555422 12122234555555555555433 333444445444 3444444332 211223334333 45


Q ss_pred             ceeecCCccccccCCCcCCCCCCCCEEEcCCCeecccCcccccCCCCCceEeccCCccc------------CcCchhhcc
Q 037302           94 DALRLRGNKLDGLIPSSIGNLTNLTHLDLSLNQLSGRLPQEVGNLKNLLSLFLDNNNLT------------GPIPSTLYH  161 (408)
Q Consensus        94 ~~L~l~~~~i~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~------------~~~~~~~~~  161 (408)
                      +.+.+..+ +..+....|..+ +++.+.+..+ +......++..+..++.+.+......            ......+..
T Consensus       116 ~~i~lp~~-~~~i~~~~F~~~-~l~~~~~~~~-v~~i~~~~f~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  192 (379)
T 4h09_A          116 DDFEFPGA-TTEIGNYIFYNS-SVKRIVIPKS-VTTIKDGIGYKAENLEKIEVSSNNKNYVAENYVLYNKNKTILESYPA  192 (379)
T ss_dssp             SEEECCTT-CCEECTTTTTTC-CCCEEEECTT-CCEECSCTTTTCTTCCEEEECTTCSSEEEETTEEEETTSSEEEECCT
T ss_pred             ccccCCCc-cccccccccccc-eeeeeeccce-eeccccchhcccccccccccccccceeecccceecccccceeccccc
Confidence            55555443 222333333332 3444433322 11122233444444444444322110            011112233


Q ss_pred             CCCCCEEEcCCCcCCCCCCccccCCCCCCEEEecCcccccccCcccccccccCeEEccCCcCCCCCCcccCCCCCccEEE
Q 037302          162 LNQLSNLYLAYNNLVGPLPKEVGNMKNLDSLLLNRNSLTGPIPSTIGYLNLGGKLDLSHNRLDSPIPPTIGNLTNLTSLD  241 (408)
Q Consensus       162 ~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~l~~~~~L~~L~  241 (408)
                      +..+..+.+..... ......+..+.+++.+.+..+ +.......+..+..|+.+.+..+ +..+...++..+.+|+.+.
T Consensus       193 ~~~~~~~~~~~~~~-~i~~~~f~~~~~l~~i~~~~~-~~~i~~~~f~~~~~L~~i~lp~~-v~~I~~~aF~~~~~l~~i~  269 (379)
T 4h09_A          193 AKTGTEFTIPSTVK-TVTAYGFSYGKNLKKITITSG-VTTLGDGAFYGMKALDEIAIPKN-VTSIGSFLLQNCTALKTLN  269 (379)
T ss_dssp             TCCCSEEECCTTCC-EECTTTTTTCSSCSEEECCTT-CCEECTTTTTTCSSCCEEEECTT-CCEECTTTTTTCTTCCEEE
T ss_pred             ccccccccccccee-EEeecccccccccceeeeccc-eeEEccccccCCccceEEEcCCC-ccEeCccccceeehhcccc
Confidence            44455554433221 122344566777777776543 23244556677778888877654 4444556777888888888


Q ss_pred             ccCCcccccCCccccCCCCCCEEeCCCCcccccCCccccCCCCCcEEeCCCCccccCCCcCCcCCCCCcEEEcCCCccCC
Q 037302          242 LSSNQLSGLLPREVGNLKYLDSLSLDGNNLIGSIPPTIGYLTNLTSLNLGYNQLSSSIPPELMNCSQLQNLVLSHNTLSG  321 (408)
Q Consensus       242 l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~  321 (408)
                      +... +......+|.+|.+|+.+.+.++.+......+|.+|.+|+.+.|..+ ++.....+|.+|.+|+++.+..+ ++.
T Consensus       270 l~~~-i~~i~~~aF~~c~~L~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~ip~~-v~~  346 (379)
T 4h09_A          270 FYAK-VKTVPYLLCSGCSNLTKVVMDNSAIETLEPRVFMDCVKLSSVTLPTA-LKTIQVYAFKNCKALSTISYPKS-ITL  346 (379)
T ss_dssp             ECCC-CSEECTTTTTTCTTCCEEEECCTTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCCCCCCTT-CCE
T ss_pred             cccc-ceeccccccccccccccccccccccceehhhhhcCCCCCCEEEcCcc-ccEEHHHHhhCCCCCCEEEECCc-cCE
Confidence            8653 44455667788888888888877766566677888888998888654 55566778888899998888654 555


Q ss_pred             cCCcccccCCCc
Q 037302          322 IVPPEIGNLTHL  333 (408)
Q Consensus       322 ~~~~~~~~~~~L  333 (408)
                      +...+|.+++.+
T Consensus       347 I~~~aF~~c~~~  358 (379)
T 4h09_A          347 IESGAFEGSSIT  358 (379)
T ss_dssp             ECTTTTTTSSCC
T ss_pred             EchhHhhCCCCC
Confidence            667778777443

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=99.55  E-value=6.1e-15  Score=116.29  Aligned_cols=89  Identities=25%  Similarity=0.254  Sum_probs=36.2

Q ss_pred             cCCCCCcEEeCCCCccccCCCcCCcCCCCCcEEEcCCCccCCcCCcccccCCCccEEEcCCcccccc-CCcCCCCCCCcc
Q 037302          280 GYLTNLTSLNLGYNQLSSSIPPELMNCSQLQNLVLSHNTLSGIVPPEIGNLTHLRQLDLSHNFINGT-IPSQLGYIPNIS  358 (408)
Q Consensus       280 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~-~~~~~~~~~~L~  358 (408)
                      ..+++|++|++++|.++..  ..+..+++|++|++++|.+.+..+..+..+++|++|++++|.+++. .+..+..+++|+
T Consensus        39 ~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~ls~N~i~~~~~~~~~~~l~~L~  116 (149)
T 2je0_A           39 DEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLK  116 (149)
T ss_dssp             TTCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEEECTTSCCCSHHHHGGGGGCTTCC
T ss_pred             hhcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEEECCCCcCCChHHHHHHhhCCCCC
Confidence            3344444444444444322  3333344444444444444432333333344444444444444431 123334444444


Q ss_pred             EEeCCCCccCCc
Q 037302          359 AVDLSKNNLSGV  370 (408)
Q Consensus       359 ~L~l~~~~l~~~  370 (408)
                      .|++++|++.+.
T Consensus       117 ~L~l~~N~l~~~  128 (149)
T 2je0_A          117 SLDLFNCEVTNL  128 (149)
T ss_dssp             EEECTTCGGGGS
T ss_pred             EEeCcCCcccch
Confidence            444444444443

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=99.55  E-value=8.1e-15  Score=115.56  Aligned_cols=127  Identities=24%  Similarity=0.283  Sum_probs=73.6

Q ss_pred             CCCCcEEEcCCCccc-cccchhhccCCCCcEEeCCCCcCCCCCcccccCCCCCcEEeCCCceecccCcccccCCCCCcee
Q 037302           18 FPNLESIIIPYTLLS-GRIPSEIGALSKLEELALPYNSLTGTIPAEIGSLRNLVELDLSNNILNGSIPLEFGNLKDLDAL   96 (408)
Q Consensus        18 ~~~L~~L~l~~~~~~-~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L   96 (408)
                      .++|++|+++++.+. +.++..+..+++|++|++++|.++..  ..+..+++|++|++++|.+.+..|..+..+++|++|
T Consensus        16 ~~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L   93 (149)
T 2je0_A           16 PSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHL   93 (149)
T ss_dssp             GGGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEE
T ss_pred             CccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEE
Confidence            356777777777666 55566666677777777777766544  556666666666666666664455555556666666


Q ss_pred             ecCCccccccC-CCcCCCCCCCCEEEcCCCeecccCc---ccccCCCCCceEec
Q 037302           97 RLRGNKLDGLI-PSSIGNLTNLTHLDLSLNQLSGRLP---QEVGNLKNLLSLFL  146 (408)
Q Consensus        97 ~l~~~~i~~~~-~~~l~~l~~L~~L~l~~~~~~~~~~---~~~~~l~~L~~L~l  146 (408)
                      ++++|.++... +..+..+++|++|++++|.+....+   ..+..+++|+.|++
T Consensus        94 ~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l  147 (149)
T 2je0_A           94 NLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDG  147 (149)
T ss_dssp             ECTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETT
T ss_pred             ECCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccC
Confidence            66666655331 2344555555555555555443322   23444445554444

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=99.55  E-value=2.9e-15  Score=148.14  Aligned_cols=146  Identities=23%  Similarity=0.292  Sum_probs=103.5

Q ss_pred             CCccccCCCCCCEEeCCCCcccccCCccccCCCCCcEEeCCCCccccCCCcCCcCCCCCcEEEcCCCccCCcCCcccccC
Q 037302          251 LPREVGNLKYLDSLSLDGNNLIGSIPPTIGYLTNLTSLNLGYNQLSSSIPPELMNCSQLQNLVLSHNTLSGIVPPEIGNL  330 (408)
Q Consensus       251 ~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~  330 (408)
                      .+..+..++.|+.|++++|.+. .++..+..+++|++|+|++|.++ .++..+..+++|++|+|++|+++ .++..+..+
T Consensus       216 ~~~~~~~l~~L~~L~Ls~n~l~-~l~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l  292 (727)
T 4b8c_D          216 PKDSKYDDQLWHALDLSNLQIF-NISANIFKYDFLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLT-SLPAELGSC  292 (727)
T ss_dssp             ------CCCCCCEEECTTSCCS-CCCGGGGGCCSCSCCBCTTSCCS-CCCGGGGGGTTCCEEECTTSCCS-SCCSSGGGG
T ss_pred             ChhhhccCCCCcEEECCCCCCC-CCChhhcCCCCCCEEEeeCCcCc-ccChhhhCCCCCCEEeCcCCcCC-ccChhhcCC
Confidence            3455667778888888888776 34444557788888888888887 56666778888888888888887 557777888


Q ss_pred             CCccEEEcCCccccccCCcCCCCCCCccEEeCCCCccCCcCCccccCCC----eEEccCCccCCCCCCCcCCCC
Q 037302          331 THLRQLDLSHNFINGTIPSQLGYIPNISAVDLSKNNLSGVVPASVRIIP----KLIVSENNLELENSTSSENAP  400 (408)
Q Consensus       331 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~l~----~l~l~~n~~~~~~~~~~~~~~  400 (408)
                      ++|++|++++|.++ .+|..+..+++|+.|++++|++.+.+|..+..+.    .+++++|.+++.+|..+..+.
T Consensus       293 ~~L~~L~L~~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~~~~~l~l~~N~l~~~~p~~l~~l~  365 (727)
T 4b8c_D          293 FQLKYFYFFDNMVT-TLPWEFGNLCNLQFLGVEGNPLEKQFLKILTEKSVTGLIFYLRDNRPEIPLPHERRFIE  365 (727)
T ss_dssp             TTCSEEECCSSCCC-CCCSSTTSCTTCCCEECTTSCCCSHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC-----
T ss_pred             CCCCEEECCCCCCC-ccChhhhcCCCccEEeCCCCccCCCChHHHhhcchhhhHHhhccCcccCcCccccceeE
Confidence            88888888888877 6676788888888888888888887777665432    467888888888887765553

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=99.54  E-value=9.3e-14  Score=112.85  Aligned_cols=133  Identities=23%  Similarity=0.226  Sum_probs=94.0

Q ss_pred             ccEEEccCCcccccCCccccCCCCCCEEeCCCCcccccCCccccCCCCCcEEeCCCCccccCCCcCCcCCCCCcEEEcCC
Q 037302          237 LTSLDLSSNQLSGLLPREVGNLKYLDSLSLDGNNLIGSIPPTIGYLTNLTSLNLGYNQLSSSIPPELMNCSQLQNLVLSH  316 (408)
Q Consensus       237 L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~  316 (408)
                      .+.++++++.+.... ..  ..++|++|+++++.+.......+..+++|++|++++|.++...+..+..+++|++|++++
T Consensus         9 ~~~l~~~~~~l~~~p-~~--~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~   85 (177)
T 2o6r_A            9 GTEIRCNSKGLTSVP-TG--IPSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHE   85 (177)
T ss_dssp             TTEEECCSSCCSSCC-TT--CCTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred             CCEEEecCCCCccCC-CC--CCCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCC
Confidence            455666666555322 21  125677777777777655555567777888888888877766556677788888888888


Q ss_pred             CccCCcCCcccccCCCccEEEcCCccccccCCcCCCCCCCccEEeCCCCccCCcCC
Q 037302          317 NTLSGIVPPEIGNLTHLRQLDLSHNFINGTIPSQLGYIPNISAVDLSKNNLSGVVP  372 (408)
Q Consensus       317 ~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~  372 (408)
                      |.+++..+..+..+++|++|++++|++++..+..+..+++|+.|++++|++.+..|
T Consensus        86 N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~  141 (177)
T 2o6r_A           86 NKLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP  141 (177)
T ss_dssp             SCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred             CCccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCCCeeccCc
Confidence            88876666667778888888888888886655566778888888888888876543

>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}

Probab=99.54  E-value=1.8e-12  Score=118.71  Aligned_cols=315  Identities=12%  Similarity=0.106  Sum_probs=172.5

Q ss_pred             hccCCCCcEEeCCCCcCCCCCcccccCCCCCcEEeCCCceecccCcccccCCCCCceeecCCccccccCCCcCCCCCCCC
Q 037302           39 IGALSKLEELALPYNSLTGTIPAEIGSLRNLVELDLSNNILNGSIPLEFGNLKDLDALRLRGNKLDGLIPSSIGNLTNLT  118 (408)
Q Consensus        39 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~l~~l~~L~  118 (408)
                      +....+|+++.+... ++.+...+|.+|.+|+.+.+..+ +..+...+|.++ +|+.+.+..+ ++.+...+|..+ +|+
T Consensus        42 ~~~~~~i~~v~ip~~-vt~Ig~~aF~~C~~L~~I~lp~~-v~~Ig~~aF~~c-~l~~i~~~~~-l~~I~~~aF~~~-~L~  116 (379)
T 4h09_A           42 YKDRDRISEVRVNSG-ITSIGEANFNSCYNMTKVTVAST-VTSIGDGAFADT-KLQSYTGMER-VKKFGDYVFQGT-DLD  116 (379)
T ss_dssp             GGGGGGCSEEEECTT-EEEECTTTTTTCTTCCEEEECTT-CCEECTTTTTTC-CCCEEEECTT-CCEECTTTTTTC-CCS
T ss_pred             cccccCCEEEEeCCC-ccChHHHHhhCCCCCCEEEeCCc-ceEechhhhcCC-CCceEECCce-eeEeccceeccC-Ccc
Confidence            455567777777654 44466677777777887777654 333555666666 5666666543 344445555543 677


Q ss_pred             EEEcCCCeecccCcccccCCCCCceEeccCCcccCcCchhhccCCCCCEEEcCCCcCCCCCCccccCCCCCCEEEecCcc
Q 037302          119 HLDLSLNQLSGRLPQEVGNLKNLLSLFLDNNNLTGPIPSTLYHLNQLSNLYLAYNNLVGPLPKEVGNMKNLDSLLLNRNS  198 (408)
Q Consensus       119 ~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~  198 (408)
                      .+.+..+... ....+|... +++.+.+..+ ++.+....+..+..++.+.+........... ....        ..  
T Consensus       117 ~i~lp~~~~~-i~~~~F~~~-~l~~~~~~~~-v~~i~~~~f~~~~~l~~~~~~~~~~~~~~~~-~~~~--------~~--  182 (379)
T 4h09_A          117 DFEFPGATTE-IGNYIFYNS-SVKRIVIPKS-VTTIKDGIGYKAENLEKIEVSSNNKNYVAEN-YVLY--------NK--  182 (379)
T ss_dssp             EEECCTTCCE-ECTTTTTTC-CCCEEEECTT-CCEECSCTTTTCTTCCEEEECTTCSSEEEET-TEEE--------ET--
T ss_pred             cccCCCcccc-ccccccccc-eeeeeeccce-eeccccchhcccccccccccccccceeeccc-ceec--------cc--
Confidence            7777554221 233344433 4555554432 2223344555566666665543321100000 0000        00  


Q ss_pred             cccccCcccccccccCeEEccCCcCCCCCCcccCCCCCccEEEccCCcccccCCccccCCCCCCEEeCCCCcccccCCcc
Q 037302          199 LTGPIPSTIGYLNLGGKLDLSHNRLDSPIPPTIGNLTNLTSLDLSSNQLSGLLPREVGNLKYLDSLSLDGNNLIGSIPPT  278 (408)
Q Consensus       199 ~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~  278 (408)
                       .......+..+..+..+.+.... .......+..+..|+.+.+... +......++..+..|+.+.+..+ +......+
T Consensus       183 -~~~~~~~~~~~~~~~~~~~~~~~-~~i~~~~f~~~~~l~~i~~~~~-~~~i~~~~f~~~~~L~~i~lp~~-v~~I~~~a  258 (379)
T 4h09_A          183 -NKTILESYPAAKTGTEFTIPSTV-KTVTAYGFSYGKNLKKITITSG-VTTLGDGAFYGMKALDEIAIPKN-VTSIGSFL  258 (379)
T ss_dssp             -TSSEEEECCTTCCCSEEECCTTC-CEECTTTTTTCSSCSEEECCTT-CCEECTTTTTTCSSCCEEEECTT-CCEECTTT
T ss_pred             -ccceeccccccccccccccccce-eEEeecccccccccceeeeccc-eeEEccccccCCccceEEEcCCC-ccEeCccc
Confidence             00011122233334444443221 1123344555667777766543 23344455666777777777654 33344456


Q ss_pred             ccCCCCCcEEeCCCCccccCCCcCCcCCCCCcEEEcCCCccCCcCCcccccCCCccEEEcCCccccccCCcCCCCCCCcc
Q 037302          279 IGYLTNLTSLNLGYNQLSSSIPPELMNCSQLQNLVLSHNTLSGIVPPEIGNLTHLRQLDLSHNFINGTIPSQLGYIPNIS  358 (408)
Q Consensus       279 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~  358 (408)
                      +..+.+|+.+.+..+ +.......|.+|++|+.+.+.++.++.+...+|.+|.+|+.+.+..+ ++.....+|.+|.+|+
T Consensus       259 F~~~~~l~~i~l~~~-i~~i~~~aF~~c~~L~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~  336 (379)
T 4h09_A          259 LQNCTALKTLNFYAK-VKTVPYLLCSGCSNLTKVVMDNSAIETLEPRVFMDCVKLSSVTLPTA-LKTIQVYAFKNCKALS  336 (379)
T ss_dssp             TTTCTTCCEEEECCC-CSEECTTTTTTCTTCCEEEECCTTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCC
T ss_pred             cceeehhcccccccc-ceeccccccccccccccccccccccceehhhhhcCCCCCCEEEcCcc-ccEEHHHHhhCCCCCC
Confidence            667777777777543 33355566777777777777777766666777777777777777654 5545566777777777


Q ss_pred             EEeCCCCccCCcCCccccCCC
Q 037302          359 AVDLSKNNLSGVVPASVRIIP  379 (408)
Q Consensus       359 ~L~l~~~~l~~~~~~~~~~l~  379 (408)
                      .+.+..+ ++.+...+|.+..
T Consensus       337 ~i~ip~~-v~~I~~~aF~~c~  356 (379)
T 4h09_A          337 TISYPKS-ITLIESGAFEGSS  356 (379)
T ss_dssp             CCCCCTT-CCEECTTTTTTSS
T ss_pred             EEEECCc-cCEEchhHhhCCC
Confidence            7777544 5555556665543

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=99.52  E-value=1.9e-13  Score=110.99  Aligned_cols=130  Identities=20%  Similarity=0.214  Sum_probs=111.0

Q ss_pred             CCEEeCCCCcccccCCccccCCCCCcEEeCCCCccccCCCcCCcCCCCCcEEEcCCCccCCcCCcccccCCCccEEEcCC
Q 037302          261 LDSLSLDGNNLIGSIPPTIGYLTNLTSLNLGYNQLSSSIPPELMNCSQLQNLVLSHNTLSGIVPPEIGNLTHLRQLDLSH  340 (408)
Q Consensus       261 L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~  340 (408)
                      .+.+++.++.+.... .  ...++|++|++++|.+....+..+..+++|++|++++|.+++..+..+..+++|++|++++
T Consensus         9 ~~~l~~~~~~l~~~p-~--~~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~   85 (177)
T 2o6r_A            9 GTEIRCNSKGLTSVP-T--GIPSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHE   85 (177)
T ss_dssp             TTEEECCSSCCSSCC-T--TCCTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred             CCEEEecCCCCccCC-C--CCCCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCC
Confidence            577888888776443 2  2347999999999999977777788999999999999999977777789999999999999


Q ss_pred             ccccccCCcCCCCCCCccEEeCCCCccCCcCCcccc---CCCeEEccCCccCCCCC
Q 037302          341 NFINGTIPSQLGYIPNISAVDLSKNNLSGVVPASVR---IIPKLIVSENNLELENS  393 (408)
Q Consensus       341 ~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~---~l~~l~l~~n~~~~~~~  393 (408)
                      |.+++..+..+..+++|+.|++++|++.++.+..+.   ++++|++++|++++..|
T Consensus        86 N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~  141 (177)
T 2o6r_A           86 NKLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP  141 (177)
T ss_dssp             SCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred             CCccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCCCeeccCc
Confidence            999977777889999999999999999988876654   57799999999987654

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=99.52  E-value=2e-13  Score=112.27  Aligned_cols=128  Identities=28%  Similarity=0.372  Sum_probs=84.4

Q ss_pred             cEEEccCCcccccCCccccCCCCCCEEeCCCCcccccCCccccCCCCCcEEeCCCCccccCCCcCCcCCCCCcEEEcCCC
Q 037302          238 TSLDLSSNQLSGLLPREVGNLKYLDSLSLDGNNLIGSIPPTIGYLTNLTSLNLGYNQLSSSIPPELMNCSQLQNLVLSHN  317 (408)
Q Consensus       238 ~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~  317 (408)
                      +.++++++.+.. .+..+  .+++++|+++++.+. ..+..+..+++|++|++++|.++...+..|.++++|++|++++|
T Consensus        13 ~~l~~~~~~l~~-ip~~~--~~~l~~L~L~~n~i~-~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N   88 (193)
T 2wfh_A           13 TVVRCSNKGLKV-LPKGI--PRDVTELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYN   88 (193)
T ss_dssp             TEEECTTSCCSS-CCSCC--CTTCCEEECCSSCCC-SCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred             CEEEcCCCCCCc-CCCCC--CCCCCEEECCCCcCc-hhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCC
Confidence            345555555442 22222  246666666666665 33355666777777777777777666666777777777777777


Q ss_pred             ccCCcCCcccccCCCccEEEcCCccccccCCcCCCCCCCccEEeCCCCccCC
Q 037302          318 TLSGIVPPEIGNLTHLRQLDLSHNFINGTIPSQLGYIPNISAVDLSKNNLSG  369 (408)
Q Consensus       318 ~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~  369 (408)
                      .++.+.+..|..+++|+.|++++|.++...+..+..+++|+.|++++|++..
T Consensus        89 ~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~C  140 (193)
T 2wfh_A           89 RLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPLYC  140 (193)
T ss_dssp             CCCBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCEEC
T ss_pred             ccCEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCCCeec
Confidence            7776666677777777777777777775555567777777777777777753

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=99.52  E-value=2.4e-16  Score=151.08  Aligned_cols=108  Identities=27%  Similarity=0.325  Sum_probs=55.6

Q ss_pred             CCCEEeCCCCcccccCCccccCCCCCcEEeCCCCccccCCCcCCcCCCCCcEEEcCCCccCCcCCcccccCCCccEEEcC
Q 037302          260 YLDSLSLDGNNLIGSIPPTIGYLTNLTSLNLGYNQLSSSIPPELMNCSQLQNLVLSHNTLSGIVPPEIGNLTHLRQLDLS  339 (408)
Q Consensus       260 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~  339 (408)
                      .|+.|++++|.+.. ++. +..+++|+.|++++|.++ ..|..+.++++|+.|++++|.+++ .+ .+..+++|+.|+++
T Consensus       442 ~L~~L~Ls~n~l~~-lp~-~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~~-lp-~l~~l~~L~~L~Ls  516 (567)
T 1dce_A          442 DVRVLHLAHKDLTV-LCH-LEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALEN-VD-GVANLPRLQELLLC  516 (567)
T ss_dssp             TCSEEECTTSCCSS-CCC-GGGGTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCC-CG-GGTTCSSCCEEECC
T ss_pred             CceEEEecCCCCCC-CcC-ccccccCcEeecCccccc-ccchhhhcCCCCCEEECCCCCCCC-Cc-ccCCCCCCcEEECC
Confidence            35555555555543 222 455555555555555555 344445555555555555555553 22 44555555555555


Q ss_pred             CccccccC-CcCCCCCCCccEEeCCCCccCCcCC
Q 037302          340 HNFINGTI-PSQLGYIPNISAVDLSKNNLSGVVP  372 (408)
Q Consensus       340 ~~~~~~~~-~~~~~~~~~L~~L~l~~~~l~~~~~  372 (408)
                      +|.+++.. |..+..+++|+.|++++|++.+.+|
T Consensus       517 ~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~  550 (567)
T 1dce_A          517 NNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEG  550 (567)
T ss_dssp             SSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSS
T ss_pred             CCCCCCCCCcHHHhcCCCCCEEEecCCcCCCCcc
Confidence            55555443 5555555555555555555554433

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=99.50  E-value=3.1e-13  Score=111.19  Aligned_cols=125  Identities=26%  Similarity=0.307  Sum_probs=108.8

Q ss_pred             CEEeCCCCcccccCCccccCCCCCcEEeCCCCccccCCCcCCcCCCCCcEEEcCCCccCCcCCcccccCCCccEEEcCCc
Q 037302          262 DSLSLDGNNLIGSIPPTIGYLTNLTSLNLGYNQLSSSIPPELMNCSQLQNLVLSHNTLSGIVPPEIGNLTHLRQLDLSHN  341 (408)
Q Consensus       262 ~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~  341 (408)
                      +.++.+++.+... +..+  .++|++|++++|.++ ..+..+.++++|++|++++|.++++.+..|..+++|++|++++|
T Consensus        13 ~~l~~~~~~l~~i-p~~~--~~~l~~L~L~~n~i~-~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N   88 (193)
T 2wfh_A           13 TVVRCSNKGLKVL-PKGI--PRDVTELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYN   88 (193)
T ss_dssp             TEEECTTSCCSSC-CSCC--CTTCCEEECCSSCCC-SCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred             CEEEcCCCCCCcC-CCCC--CCCCCEEECCCCcCc-hhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCC
Confidence            5788888887744 3332  368999999999998 55678899999999999999999888888999999999999999


Q ss_pred             cccccCCcCCCCCCCccEEeCCCCccCCcCCcccc---CCCeEEccCCccCC
Q 037302          342 FINGTIPSQLGYIPNISAVDLSKNNLSGVVPASVR---IIPKLIVSENNLEL  390 (408)
Q Consensus       342 ~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~---~l~~l~l~~n~~~~  390 (408)
                      .++...+..|..+++|+.|++++|++..+.+..|.   ++++|++++|++.+
T Consensus        89 ~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~C  140 (193)
T 2wfh_A           89 RLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPLYC  140 (193)
T ss_dssp             CCCBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCEEC
T ss_pred             ccCEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCCCeec
Confidence            99988888999999999999999999988877665   56699999999864

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=99.47  E-value=1.1e-15  Score=146.62  Aligned_cols=121  Identities=25%  Similarity=0.208  Sum_probs=69.4

Q ss_pred             CCCEEEcCCCeecccCcccccCCCCCceEeccCCcccCcCchhhccCCCCCEEEcCCCcCCCCCCccccCCCCCCEEEec
Q 037302          116 NLTHLDLSLNQLSGRLPQEVGNLKNLLSLFLDNNNLTGPIPSTLYHLNQLSNLYLAYNNLVGPLPKEVGNMKNLDSLLLN  195 (408)
Q Consensus       116 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~  195 (408)
                      .|+.|++++|.+.. ++. +..+++|+.|++++|.++ .++..+..+++|+.|++++|.+.. ++ .+..+++|+.|+++
T Consensus       442 ~L~~L~Ls~n~l~~-lp~-~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~~-lp-~l~~l~~L~~L~Ls  516 (567)
T 1dce_A          442 DVRVLHLAHKDLTV-LCH-LEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALEN-VD-GVANLPRLQELLLC  516 (567)
T ss_dssp             TCSEEECTTSCCSS-CCC-GGGGTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCC-CG-GGTTCSSCCEEECC
T ss_pred             CceEEEecCCCCCC-CcC-ccccccCcEeecCccccc-ccchhhhcCCCCCEEECCCCCCCC-Cc-ccCCCCCCcEEECC
Confidence            35666666666553 333 556666666666666665 445556666666666666666554 33 45666666666666


Q ss_pred             Cccccccc-CcccccccccCeEEccCCcCCCCCCc---ccCCCCCccEEE
Q 037302          196 RNSLTGPI-PSTIGYLNLGGKLDLSHNRLDSPIPP---TIGNLTNLTSLD  241 (408)
Q Consensus       196 ~~~~~~~~-~~~~~~~~~L~~l~l~~~~~~~~~~~---~l~~~~~L~~L~  241 (408)
                      +|.+.+.. +..+..++.|+.|++++|.+....+.   .+..+++|+.|+
T Consensus       517 ~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~l~~~lp~L~~L~  566 (567)
T 1dce_A          517 NNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSIL  566 (567)
T ss_dssp             SSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSSCTTHHHHHCTTCSEEE
T ss_pred             CCCCCCCCCcHHHhcCCCCCEEEecCCcCCCCccHHHHHHHHCcccCccC
Confidence            66665443 55566666666666666665443221   122356666664

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=99.46  E-value=1.1e-14  Score=144.03  Aligned_cols=142  Identities=28%  Similarity=0.346  Sum_probs=72.5

Q ss_pred             cccCCCCCccEEEccCCcccccCCccccCCCCCCEEeCCCCcccccCCccccCCCCCcEEeCCCCccccCCCcCCcCCCC
Q 037302          229 PTIGNLTNLTSLDLSSNQLSGLLPREVGNLKYLDSLSLDGNNLIGSIPPTIGYLTNLTSLNLGYNQLSSSIPPELMNCSQ  308 (408)
Q Consensus       229 ~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~  308 (408)
                      ..+..++.|+.|++++|.+. ..+..+..+++|++|++++|.+. .++..+..+++|++|+|++|.++ .++..+..+++
T Consensus       218 ~~~~~l~~L~~L~Ls~n~l~-~l~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~  294 (727)
T 4b8c_D          218 DSKYDDQLWHALDLSNLQIF-NISANIFKYDFLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLT-SLPAELGSCFQ  294 (727)
T ss_dssp             ----CCCCCCEEECTTSCCS-CCCGGGGGCCSCSCCBCTTSCCS-CCCGGGGGGTTCCEEECTTSCCS-SCCSSGGGGTT
T ss_pred             hhhccCCCCcEEECCCCCCC-CCChhhcCCCCCCEEEeeCCcCc-ccChhhhCCCCCCEEeCcCCcCC-ccChhhcCCCC
Confidence            34445555666666655554 23333335555666666666555 34444555566666666666655 44555555566


Q ss_pred             CcEEEcCCCccCCcCCcccccCCCccEEEcCCccccccCCcCCCCCCC-ccEEeCCCCccCCcCCcc
Q 037302          309 LQNLVLSHNTLSGIVPPEIGNLTHLRQLDLSHNFINGTIPSQLGYIPN-ISAVDLSKNNLSGVVPAS  374 (408)
Q Consensus       309 L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~-L~~L~l~~~~l~~~~~~~  374 (408)
                      |++|+|++|.+. .++..|..+++|+.|++++|.+++.+|..+..... +..+++++|.+.+..|..
T Consensus       295 L~~L~L~~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~~~~~l~l~~N~l~~~~p~~  360 (727)
T 4b8c_D          295 LKYFYFFDNMVT-TLPWEFGNLCNLQFLGVEGNPLEKQFLKILTEKSVTGLIFYLRDNRPEIPLPHE  360 (727)
T ss_dssp             CSEEECCSSCCC-CCCSSTTSCTTCCCEECTTSCCCSHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC
T ss_pred             CCEEECCCCCCC-ccChhhhcCCCccEEeCCCCccCCCChHHHhhcchhhhHHhhccCcccCcCccc
Confidence            666666666554 33444555666666666666665544444332211 112445555555554443

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=99.46  E-value=1e-13  Score=112.40  Aligned_cols=132  Identities=18%  Similarity=0.228  Sum_probs=72.9

Q ss_pred             CCCCccEEEccCCcccccCCccccCCCCCCEEeCCCCcccccCCccccCCCCCcEEeCCCCccccCCCcCCcCCCCCcEE
Q 037302          233 NLTNLTSLDLSSNQLSGLLPREVGNLKYLDSLSLDGNNLIGSIPPTIGYLTNLTSLNLGYNQLSSSIPPELMNCSQLQNL  312 (408)
Q Consensus       233 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L  312 (408)
                      .+++|++|++++|.+... +......++|+.|++++|.+...  ..+..+++|++|++++|.++...+..+..+++|++|
T Consensus        17 ~~~~L~~L~l~~n~l~~i-~~~~~~~~~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L   93 (176)
T 1a9n_A           17 NAVRDRELDLRGYKIPVI-ENLGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTEL   93 (176)
T ss_dssp             CTTSCEEEECTTSCCCSC-CCGGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCEE
T ss_pred             CcCCceEEEeeCCCCchh-HHhhhcCCCCCEEECCCCCCCcc--cccccCCCCCEEECCCCcccccCcchhhcCCCCCEE
Confidence            445566666666655522 22222223666666666655533  345556666666666666664433334556666666


Q ss_pred             EcCCCccCCcCC-cccccCCCccEEEcCCccccccCCc----CCCCCCCccEEeCCCCccC
Q 037302          313 VLSHNTLSGIVP-PEIGNLTHLRQLDLSHNFINGTIPS----QLGYIPNISAVDLSKNNLS  368 (408)
Q Consensus       313 ~l~~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~~~~~----~~~~~~~L~~L~l~~~~l~  368 (408)
                      ++++|.+..... ..+..+++|+.|++++|+++. .|.    .+..+++|+.|++++|...
T Consensus        94 ~L~~N~i~~~~~~~~l~~l~~L~~L~l~~N~i~~-~~~~~~~~~~~l~~L~~Ld~~~n~~~  153 (176)
T 1a9n_A           94 ILTNNSLVELGDLDPLASLKSLTYLCILRNPVTN-KKHYRLYVIYKVPQVRVLDFQKVKLK  153 (176)
T ss_dssp             ECCSCCCCCGGGGGGGGGCTTCCEEECCSSGGGG-STTHHHHHHHHCTTCSEETTEECCHH
T ss_pred             ECCCCcCCcchhhHhhhcCCCCCEEEecCCCCCC-cHhHHHHHHHHCCccceeCCCcCCHH
Confidence            666666643221 245566666666666666653 333    2556666666666666553

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=99.45  E-value=1.5e-13  Score=111.55  Aligned_cols=133  Identities=19%  Similarity=0.152  Sum_probs=73.5

Q ss_pred             cccCCCCCCcEEEcCCCccccccchhhccC-CCCcEEeCCCCcCCCCCcccccCCCCCcEEeCCCceecccCcccccCCC
Q 037302           13 LNFTCFPNLESIIIPYTLLSGRIPSEIGAL-SKLEELALPYNSLTGTIPAEIGSLRNLVELDLSNNILNGSIPLEFGNLK   91 (408)
Q Consensus        13 ~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~-~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~   91 (408)
                      ..|.++++|++|+++++.+.. ++. +..+ ++|++|++++|.+++.  ..+..+++|++|++++|.+....+..+..++
T Consensus        13 ~~~~~~~~L~~L~l~~n~l~~-i~~-~~~~~~~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~   88 (176)
T 1a9n_A           13 AQYTNAVRDRELDLRGYKIPV-IEN-LGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRIGEGLDQALP   88 (176)
T ss_dssp             CEEECTTSCEEEECTTSCCCS-CCC-GGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCEECSCHHHHCT
T ss_pred             HhcCCcCCceEEEeeCCCCch-hHH-hhhcCCCCCEEECCCCCCCcc--cccccCCCCCEEECCCCcccccCcchhhcCC
Confidence            345666777777777776663 233 3333 3677777777666543  4556666666666666666543334345566


Q ss_pred             CCceeecCCccccccCC-CcCCCCCCCCEEEcCCCeecccCcc----cccCCCCCceEeccCCc
Q 037302           92 DLDALRLRGNKLDGLIP-SSIGNLTNLTHLDLSLNQLSGRLPQ----EVGNLKNLLSLFLDNNN  150 (408)
Q Consensus        92 ~L~~L~l~~~~i~~~~~-~~l~~l~~L~~L~l~~~~~~~~~~~----~~~~l~~L~~L~l~~~~  150 (408)
                      +|++|++++|.+..+.. ..+..+++|++|++++|.+... +.    .+..+++|+.++++++.
T Consensus        89 ~L~~L~L~~N~i~~~~~~~~l~~l~~L~~L~l~~N~i~~~-~~~~~~~~~~l~~L~~Ld~~~n~  151 (176)
T 1a9n_A           89 DLTELILTNNSLVELGDLDPLASLKSLTYLCILRNPVTNK-KHYRLYVIYKVPQVRVLDFQKVK  151 (176)
T ss_dssp             TCCEEECCSCCCCCGGGGGGGGGCTTCCEEECCSSGGGGS-TTHHHHHHHHCTTCSEETTEECC
T ss_pred             CCCEEECCCCcCCcchhhHhhhcCCCCCEEEecCCCCCCc-HhHHHHHHHHCCccceeCCCcCC
Confidence            66666666666543322 2455555555555555555422 22    24445555555555443

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=99.32  E-value=1.7e-11  Score=98.52  Aligned_cols=108  Identities=23%  Similarity=0.252  Sum_probs=72.8

Q ss_pred             CCEEeCCCCcccccCCccccCCCCCcEEeCCCCccccCCCcCCcCCCCCcEEEcCCCccCCcCCcccccCCCccEEEcCC
Q 037302          261 LDSLSLDGNNLIGSIPPTIGYLTNLTSLNLGYNQLSSSIPPELMNCSQLQNLVLSHNTLSGIVPPEIGNLTHLRQLDLSH  340 (408)
Q Consensus       261 L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~  340 (408)
                      .+.++++++.+... +..+  .++|++|++++|.++...+..+.++++|++|++++|+++++.+..|..+++|++|++++
T Consensus        11 ~~~l~~s~n~l~~i-p~~~--~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~   87 (170)
T 3g39_A           11 GTTVDCSGKSLASV-PTGI--PTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLND   87 (170)
T ss_dssp             TTEEECTTSCCSSC-CSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred             CCEEEeCCCCcCcc-CccC--CCCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCC
Confidence            35566666655532 2222  26677777777777766666677777777777777777766666667777777777777


Q ss_pred             ccccccCCcCCCCCCCccEEeCCCCccCCcC
Q 037302          341 NFINGTIPSQLGYIPNISAVDLSKNNLSGVV  371 (408)
Q Consensus       341 ~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~  371 (408)
                      |+++...+..+..+++|+.|++++|++....
T Consensus        88 N~l~~~~~~~~~~l~~L~~L~L~~N~~~c~c  118 (170)
T 3g39_A           88 NQLKSIPRGAFDNLKSLTHIWLLNNPWDCAC  118 (170)
T ss_dssp             SCCCCCCTTTTTTCTTCCEEECCSSCBCTTB
T ss_pred             CccCEeCHHHhcCCCCCCEEEeCCCCCCCCc
Confidence            7777655566777777777777777776543

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=99.31  E-value=2.1e-11  Score=97.95  Aligned_cols=106  Identities=19%  Similarity=0.293  Sum_probs=92.3

Q ss_pred             CCcEEeCCCCccccCCCcCCcCCCCCcEEEcCCCccCCcCCcccccCCCccEEEcCCccccccCCcCCCCCCCccEEeCC
Q 037302          284 NLTSLNLGYNQLSSSIPPELMNCSQLQNLVLSHNTLSGIVPPEIGNLTHLRQLDLSHNFINGTIPSQLGYIPNISAVDLS  363 (408)
Q Consensus       284 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~  363 (408)
                      +.+.++++++.++. ++..+.  ++|++|++++|.+++..+..|..+++|++|++++|++++..+..|..+++|+.|+++
T Consensus        10 ~~~~l~~s~n~l~~-ip~~~~--~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~   86 (170)
T 3g39_A           10 SGTTVDCSGKSLAS-VPTGIP--TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLN   86 (170)
T ss_dssp             ETTEEECTTSCCSS-CCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred             CCCEEEeCCCCcCc-cCccCC--CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECC
Confidence            46899999999984 444443  899999999999998888899999999999999999997777788999999999999


Q ss_pred             CCccCCcCCcccc---CCCeEEccCCccCCCC
Q 037302          364 KNNLSGVVPASVR---IIPKLIVSENNLELEN  392 (408)
Q Consensus       364 ~~~l~~~~~~~~~---~l~~l~l~~n~~~~~~  392 (408)
                      +|+++++.+..+.   ++++|++++|++++..
T Consensus        87 ~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c~c  118 (170)
T 3g39_A           87 DNQLKSIPRGAFDNLKSLTHIWLLNNPWDCAC  118 (170)
T ss_dssp             SSCCCCCCTTTTTTCTTCCEEECCSSCBCTTB
T ss_pred             CCccCEeCHHHhcCCCCCCEEEeCCCCCCCCc
Confidence            9999998887665   5669999999997653

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=99.29  E-value=1.8e-14  Score=119.33  Aligned_cols=130  Identities=25%  Similarity=0.314  Sum_probs=76.4

Q ss_pred             CCCCcEEEcCCCccccccch------hhccCCCCcEEeCCCCcCCCCCcccccCCCCCcEEeCCCceecccCcccccCCC
Q 037302           18 FPNLESIIIPYTLLSGRIPS------EIGALSKLEELALPYNSLTGTIPAEIGSLRNLVELDLSNNILNGSIPLEFGNLK   91 (408)
Q Consensus        18 ~~~L~~L~l~~~~~~~~~~~------~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~   91 (408)
                      .+.++.++++.+.+.+..+.      .+..+++|++|++++|.++. .+ .+..+++|+.|++++|.+. .+|..+..++
T Consensus        17 ~~~l~~l~l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n~l~~-l~-~~~~l~~L~~L~l~~n~l~-~l~~~~~~~~   93 (198)
T 1ds9_A           17 RKSVVATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIK-KIENLDAVAD   93 (198)
T ss_dssp             TTCCCCTTCSEEECCBCCTTCCCCHHHHHHTTTCSEEECSEEEESC-CC-CHHHHTTCCEEEEEEEEEC-SCSSHHHHHH
T ss_pred             cccccCcchheeEeccccCcHhhhhHHHhcCCCCCEEECCCCCCcc-cc-ccccCCCCCEEECCCCCcc-cccchhhcCC
Confidence            34444444544444444333      66677777777777776664 33 5666667777777777666 4455555566


Q ss_pred             CCceeecCCccccccCCCcCCCCCCCCEEEcCCCeecccCc-ccccCCCCCceEeccCCccc
Q 037302           92 DLDALRLRGNKLDGLIPSSIGNLTNLTHLDLSLNQLSGRLP-QEVGNLKNLLSLFLDNNNLT  152 (408)
Q Consensus        92 ~L~~L~l~~~~i~~~~~~~l~~l~~L~~L~l~~~~~~~~~~-~~~~~l~~L~~L~l~~~~~~  152 (408)
                      +|++|++++|.+..+.  .+..+++|++|++++|.+..... ..+..+++|+++++++|.+.
T Consensus        94 ~L~~L~L~~N~l~~l~--~~~~l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~  153 (198)
T 1ds9_A           94 TLEELWISYNQIASLS--GIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLY  153 (198)
T ss_dssp             HCSEEEEEEEECCCHH--HHHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHH
T ss_pred             cCCEEECcCCcCCcCC--ccccCCCCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCccc
Confidence            6777777766665432  35556666666666666653221 34556666666666666554

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=99.28  E-value=3.9e-11  Score=96.77  Aligned_cols=106  Identities=24%  Similarity=0.279  Sum_probs=69.1

Q ss_pred             CEEeCCCCcccccCCccccCCCCCcEEeCCCCccccCCCcCCcCCCCCcEEEcCCCccCCcCCcccccCCCccEEEcCCc
Q 037302          262 DSLSLDGNNLIGSIPPTIGYLTNLTSLNLGYNQLSSSIPPELMNCSQLQNLVLSHNTLSGIVPPEIGNLTHLRQLDLSHN  341 (408)
Q Consensus       262 ~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~  341 (408)
                      +.++++++.+... +..+  .++|++|++++|.+....+..+.++++|++|++++|+++++....|..+++|+.|++++|
T Consensus        15 ~~l~~~~n~l~~i-P~~~--~~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N   91 (174)
T 2r9u_A           15 TLVNCQNIRLASV-PAGI--PTDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDN   91 (174)
T ss_dssp             SEEECCSSCCSSC-CSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred             cEEEeCCCCCCcc-CCCc--CCCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCC
Confidence            4555655555422 2222  256777777777776665666677777777777777776655555667777777777777


Q ss_pred             cccccCCcCCCCCCCccEEeCCCCccCCc
Q 037302          342 FINGTIPSQLGYIPNISAVDLSKNNLSGV  370 (408)
Q Consensus       342 ~~~~~~~~~~~~~~~L~~L~l~~~~l~~~  370 (408)
                      +++...+..+..+++|+.|++++|++...
T Consensus        92 ~l~~l~~~~~~~l~~L~~L~L~~N~~~c~  120 (174)
T 2r9u_A           92 HLKSIPRGAFDNLKSLTHIYLYNNPWDCE  120 (174)
T ss_dssp             CCCCCCTTTTTTCTTCSEEECCSSCBCTT
T ss_pred             ccceeCHHHhccccCCCEEEeCCCCcccc
Confidence            77755555567777777777777777643

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=99.26  E-value=5.7e-11  Score=95.76  Aligned_cols=104  Identities=20%  Similarity=0.329  Sum_probs=90.1

Q ss_pred             CcEEeCCCCccccCCCcCCcCCCCCcEEEcCCCccCCcCCcccccCCCccEEEcCCccccccCCcCCCCCCCccEEeCCC
Q 037302          285 LTSLNLGYNQLSSSIPPELMNCSQLQNLVLSHNTLSGIVPPEIGNLTHLRQLDLSHNFINGTIPSQLGYIPNISAVDLSK  364 (408)
Q Consensus       285 L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~  364 (408)
                      -+.++++++.++ .++..+.  ++|++|++++|.+.+..+..|..+++|++|++++|++++..+..|..+++|+.|++++
T Consensus        14 ~~~l~~~~n~l~-~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~   90 (174)
T 2r9u_A           14 QTLVNCQNIRLA-SVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLND   90 (174)
T ss_dssp             SSEEECCSSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred             CcEEEeCCCCCC-ccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCC
Confidence            478999999998 4455444  8999999999999988888999999999999999999977667788999999999999


Q ss_pred             CccCCcCCcccc---CCCeEEccCCccCCC
Q 037302          365 NNLSGVVPASVR---IIPKLIVSENNLELE  391 (408)
Q Consensus       365 ~~l~~~~~~~~~---~l~~l~l~~n~~~~~  391 (408)
                      |++.++.+..+.   ++++|++++|++...
T Consensus        91 N~l~~l~~~~~~~l~~L~~L~L~~N~~~c~  120 (174)
T 2r9u_A           91 NHLKSIPRGAFDNLKSLTHIYLYNNPWDCE  120 (174)
T ss_dssp             SCCCCCCTTTTTTCTTCSEEECCSSCBCTT
T ss_pred             CccceeCHHHhccccCCCEEEeCCCCcccc
Confidence            999988876555   567999999999743

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=99.24  E-value=1.7e-14  Score=119.48  Aligned_cols=111  Identities=27%  Similarity=0.314  Sum_probs=49.3

Q ss_pred             ccCCCCCCEEeCCCCcccccCCccccCCCCCcEEeCCCCccccCCCcCCcCCCCCcEEEcCCCccCCcCCcccccCCCcc
Q 037302          255 VGNLKYLDSLSLDGNNLIGSIPPTIGYLTNLTSLNLGYNQLSSSIPPELMNCSQLQNLVLSHNTLSGIVPPEIGNLTHLR  334 (408)
Q Consensus       255 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~  334 (408)
                      +..+++|++|++++|.+.. .+ .+..+++|++|++++|.++ ..+..+..+++|++|++++|.+.+.  ..+..+++|+
T Consensus        44 ~~~l~~L~~L~ls~n~l~~-l~-~~~~l~~L~~L~l~~n~l~-~l~~~~~~~~~L~~L~L~~N~l~~l--~~~~~l~~L~  118 (198)
T 1ds9_A           44 LSTLKACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIK-KIENLDAVADTLEELWISYNQIASL--SGIEKLVNLR  118 (198)
T ss_dssp             HHHTTTCSEEECSEEEESC-CC-CHHHHTTCCEEEEEEEEEC-SCSSHHHHHHHCSEEEEEEEECCCH--HHHHHHHHSS
T ss_pred             HhcCCCCCEEECCCCCCcc-cc-ccccCCCCCEEECCCCCcc-cccchhhcCCcCCEEECcCCcCCcC--CccccCCCCC
Confidence            3344444444444444432 12 3444444444444444444 2233333344455555555544432  1344445555


Q ss_pred             EEEcCCccccccCC-cCCCCCCCccEEeCCCCccCCc
Q 037302          335 QLDLSHNFINGTIP-SQLGYIPNISAVDLSKNNLSGV  370 (408)
Q Consensus       335 ~L~l~~~~~~~~~~-~~~~~~~~L~~L~l~~~~l~~~  370 (408)
                      .|++++|++++..+ ..+..+++|+.|++++|++.+.
T Consensus       119 ~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~  155 (198)
T 1ds9_A          119 VLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYND  155 (198)
T ss_dssp             EEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHH
T ss_pred             EEECCCCcCCchhHHHHHhcCCCCCEEEecCCccccc
Confidence            55555555543211 2344455555555555555443

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}

Probab=99.20  E-value=3.1e-13  Score=122.78  Aligned_cols=166  Identities=20%  Similarity=0.175  Sum_probs=115.3

Q ss_pred             ccccCeEEccCCcCCCCCCcc----cC-CCCCccEEEccCCcccccCCccc-cCCCCCCEEeCCCCcccccCCccc----
Q 037302          210 LNLGGKLDLSHNRLDSPIPPT----IG-NLTNLTSLDLSSNQLSGLLPREV-GNLKYLDSLSLDGNNLIGSIPPTI----  279 (408)
Q Consensus       210 ~~~L~~l~l~~~~~~~~~~~~----l~-~~~~L~~L~l~~~~~~~~~~~~~-~~~~~L~~L~l~~~~~~~~~~~~~----  279 (408)
                      .+.++.+++++|.+.......    +. .+++|++|++++|.+++.....+ ..+++|+.|++++|.+.+.....+    
T Consensus        71 ~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L  150 (372)
T 3un9_A           71 LSSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLL  150 (372)
T ss_dssp             HTTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHH
T ss_pred             HhhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHH
Confidence            467889999998876432222    22 23689999999998865433333 245688999999998764422222    


Q ss_pred             -cCCCCCcEEeCCCCccccCCC----cCCcCCCCCcEEEcCCCccCCcC----CcccccCCCccEEEcCCccccccC---
Q 037302          280 -GYLTNLTSLNLGYNQLSSSIP----PELMNCSQLQNLVLSHNTLSGIV----PPEIGNLTHLRQLDLSHNFINGTI---  347 (408)
Q Consensus       280 -~~~~~L~~L~l~~~~~~~~~~----~~~~~~~~L~~L~l~~~~~~~~~----~~~~~~~~~L~~L~l~~~~~~~~~---  347 (408)
                       ...++|++|++++|.+++...    ..+..+++|++|++++|.+.+..    ...+...++|++|++++|.+++..   
T Consensus       151 ~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~  230 (372)
T 3un9_A          151 LHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALA  230 (372)
T ss_dssp             HSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHH
T ss_pred             HhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHH
Confidence             346789999999998875322    23456788999999999876432    345566788999999999888643   


Q ss_pred             -CcCCCCCCCccEEeCCCCccCCcCCccc
Q 037302          348 -PSQLGYIPNISAVDLSKNNLSGVVPASV  375 (408)
Q Consensus       348 -~~~~~~~~~L~~L~l~~~~l~~~~~~~~  375 (408)
                       +.++..+++|+.|++++|++.......+
T Consensus       231 l~~~L~~~~~L~~L~Ls~N~i~~~g~~~L  259 (372)
T 3un9_A          231 LARAAREHPSLELLHLYFNELSSEGRQVL  259 (372)
T ss_dssp             HHHHHHHCSSCCEEECTTSSCCHHHHHHH
T ss_pred             HHHHHHhCCCCCEEeccCCCCCHHHHHHH
Confidence             3344567889999999998876544444

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}

Probab=99.12  E-value=6.1e-12  Score=114.28  Aligned_cols=160  Identities=23%  Similarity=0.180  Sum_probs=91.5

Q ss_pred             CCCCcEEeCCCCcCCCCCccccc-----CCCCCcEEeCCCceecccCcccc-cCCCCCceeecCCccccccCCCcC----
Q 037302           42 LSKLEELALPYNSLTGTIPAEIG-----SLRNLVELDLSNNILNGSIPLEF-GNLKDLDALRLRGNKLDGLIPSSI----  111 (408)
Q Consensus        42 ~~~L~~L~l~~~~~~~~~~~~~~-----~~~~L~~L~l~~~~~~~~~~~~~-~~l~~L~~L~l~~~~i~~~~~~~l----  111 (408)
                      .++|++|++++|.++......+.     ..++|+.|++++|.+.+.....+ ..+++|++|++++|.+.......+    
T Consensus        71 ~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L  150 (372)
T 3un9_A           71 LSSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLL  150 (372)
T ss_dssp             HTTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHH
T ss_pred             HhhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHH
Confidence            35677777777766533222222     23567777777776653322222 234567777777776653322222    


Q ss_pred             -CCCCCCCEEEcCCCeecccC----cccccCCCCCceEeccCCcccCcC----chhhccCCCCCEEEcCCCcCCCC----
Q 037302          112 -GNLTNLTHLDLSLNQLSGRL----PQEVGNLKNLLSLFLDNNNLTGPI----PSTLYHLNQLSNLYLAYNNLVGP----  178 (408)
Q Consensus       112 -~~l~~L~~L~l~~~~~~~~~----~~~~~~l~~L~~L~l~~~~~~~~~----~~~~~~~~~L~~L~l~~~~~~~~----  178 (408)
                       ...++|++|++++|.+....    ...+...++|++|++++|.+.+..    ...+..+++|+.|++++|.+...    
T Consensus       151 ~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~  230 (372)
T 3un9_A          151 LHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALA  230 (372)
T ss_dssp             HSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHH
T ss_pred             HhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHH
Confidence             23566777777777665322    223355677777777777665322    33445566777777777766532    


Q ss_pred             CCccccCCCCCCEEEecCccccc
Q 037302          179 LPKEVGNMKNLDSLLLNRNSLTG  201 (408)
Q Consensus       179 ~~~~~~~~~~L~~L~l~~~~~~~  201 (408)
                      +...+...++|++|++++|.+.+
T Consensus       231 l~~~L~~~~~L~~L~Ls~N~i~~  253 (372)
T 3un9_A          231 LARAAREHPSLELLHLYFNELSS  253 (372)
T ss_dssp             HHHHHHHCSSCCEEECTTSSCCH
T ss_pred             HHHHHHhCCCCCEEeccCCCCCH
Confidence            12233445777777777777654

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=99.03  E-value=8e-10  Score=99.78  Aligned_cols=105  Identities=21%  Similarity=0.206  Sum_probs=86.5

Q ss_pred             EEeCCCC-cccccCCccccCCCCCcEEeCCC-CccccCCCcCCcCCCCCcEEEcCCCccCCcCCcccccCCCccEEEcCC
Q 037302          263 SLSLDGN-NLIGSIPPTIGYLTNLTSLNLGY-NQLSSSIPPELMNCSQLQNLVLSHNTLSGIVPPEIGNLTHLRQLDLSH  340 (408)
Q Consensus       263 ~L~l~~~-~~~~~~~~~~~~~~~L~~L~l~~-~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~  340 (408)
                      .++.++. .+.. ++. +..+++|++|+|++ |.+....+..|.++++|+.|+|++|.+.++.+..|..+++|+.|+|++
T Consensus        12 ~v~~~~~n~l~~-ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~   89 (347)
T 2ifg_A           12 GLRCTRDGALDS-LHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSF   89 (347)
T ss_dssp             CEECCSSCCCTT-TTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCS
T ss_pred             EEEcCCCCCCCc-cCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCC
Confidence            4566666 6663 455 88888999999996 899877777888999999999999999888888889999999999999


Q ss_pred             ccccccCCcCCCCCCCccEEeCCCCccCCc
Q 037302          341 NFINGTIPSQLGYIPNISAVDLSKNNLSGV  370 (408)
Q Consensus       341 ~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~  370 (408)
                      |+++...+..+..++ |+.|++.+|++...
T Consensus        90 N~l~~~~~~~~~~~~-L~~l~l~~N~~~c~  118 (347)
T 2ifg_A           90 NALESLSWKTVQGLS-LQELVLSGNPLHCS  118 (347)
T ss_dssp             SCCSCCCSTTTCSCC-CCEEECCSSCCCCC
T ss_pred             CccceeCHHHcccCC-ceEEEeeCCCccCC
Confidence            999966666666555 99999999998754

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=98.95  E-value=3.1e-09  Score=95.95  Aligned_cols=104  Identities=22%  Similarity=0.250  Sum_probs=88.0

Q ss_pred             cEEEccCC-cccccCCccccCCCCCCEEeCCC-CcccccCCccccCCCCCcEEeCCCCccccCCCcCCcCCCCCcEEEcC
Q 037302          238 TSLDLSSN-QLSGLLPREVGNLKYLDSLSLDG-NNLIGSIPPTIGYLTNLTSLNLGYNQLSSSIPPELMNCSQLQNLVLS  315 (408)
Q Consensus       238 ~~L~l~~~-~~~~~~~~~~~~~~~L~~L~l~~-~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~  315 (408)
                      ..++.+++ .++. .+. +..+++|+.|++++ +.+....+..+..+++|++|+|++|.++...+..|.++++|+.|+|+
T Consensus        11 ~~v~~~~~n~l~~-ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~   88 (347)
T 2ifg_A           11 SGLRCTRDGALDS-LHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLS   88 (347)
T ss_dssp             SCEECCSSCCCTT-TTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECC
T ss_pred             CEEEcCCCCCCCc-cCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCC
Confidence            34677777 6764 555 88889999999996 88887777788999999999999999998888889999999999999


Q ss_pred             CCccCCcCCcccccCCCccEEEcCCcccc
Q 037302          316 HNTLSGIVPPEIGNLTHLRQLDLSHNFIN  344 (408)
Q Consensus       316 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~~  344 (408)
                      +|++..+.+..+..++ |+.|++.+|.+.
T Consensus        89 ~N~l~~~~~~~~~~~~-L~~l~l~~N~~~  116 (347)
T 2ifg_A           89 FNALESLSWKTVQGLS-LQELVLSGNPLH  116 (347)
T ss_dssp             SSCCSCCCSTTTCSCC-CCEEECCSSCCC
T ss_pred             CCccceeCHHHcccCC-ceEEEeeCCCcc
Confidence            9999877666666665 999999999887

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}

Probab=98.85  E-value=5.8e-10  Score=100.42  Aligned_cols=57  Identities=25%  Similarity=0.220  Sum_probs=26.4

Q ss_pred             ccccccCeEEccCCcCCCCCCcccCCCCCccEEEccCCcccccCCcccc--CCCCCCEEeCC
Q 037302          208 GYLNLGGKLDLSHNRLDSPIPPTIGNLTNLTSLDLSSNQLSGLLPREVG--NLKYLDSLSLD  267 (408)
Q Consensus       208 ~~~~~L~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~--~~~~L~~L~l~  267 (408)
                      ..+|.|+.|.++++.-.. .+. +. .++|++|.+..|.+.......++  .+|+|+.|+++
T Consensus       169 ~~~P~L~~L~L~g~~~l~-l~~-~~-~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~  227 (362)
T 2ra8_A          169 DAMPLLNNLKIKGTNNLS-IGK-KP-RPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLY  227 (362)
T ss_dssp             HTCTTCCEEEEECCBTCB-CCS-CB-CTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEE
T ss_pred             hcCCCCcEEEEeCCCCce-ecc-cc-CCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEe
Confidence            444555555555442111 111 22 45666666666555433222222  45666666653

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}

Probab=98.73  E-value=9.4e-09  Score=92.53  Aligned_cols=137  Identities=18%  Similarity=0.172  Sum_probs=69.0

Q ss_pred             ccCCCCCcEEeCCCceecccCcccccCCCCCceeecCCccccccCCCcC--CCCCCCCEEEcCCC--eec-c----cCcc
Q 037302           63 IGSLRNLVELDLSNNILNGSIPLEFGNLKDLDALRLRGNKLDGLIPSSI--GNLTNLTHLDLSLN--QLS-G----RLPQ  133 (408)
Q Consensus        63 ~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~l--~~l~~L~~L~l~~~--~~~-~----~~~~  133 (408)
                      +..+++|+.|.++++.-. .++. + .+++|+.|.+..+.+.......+  ..+++|++|+++.+  ... .    .+..
T Consensus       168 l~~~P~L~~L~L~g~~~l-~l~~-~-~~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~  244 (362)
T 2ra8_A          168 LDAMPLLNNLKIKGTNNL-SIGK-K-PRPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRP  244 (362)
T ss_dssp             HHTCTTCCEEEEECCBTC-BCCS-C-BCTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGGTGG
T ss_pred             HhcCCCCcEEEEeCCCCc-eecc-c-cCCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEeccccccccchhHHHHHH
Confidence            345566666666554211 1111 2 25666666666555432211222  24566666665321  110 0    0011


Q ss_pred             cc--cCCCCCceEeccCCcccCcCchhhc---cCCCCCEEEcCCCcCCCCC----CccccCCCCCCEEEecCcccccc
Q 037302          134 EV--GNLKNLLSLFLDNNNLTGPIPSTLY---HLNQLSNLYLAYNNLVGPL----PKEVGNMKNLDSLLLNRNSLTGP  202 (408)
Q Consensus       134 ~~--~~l~~L~~L~l~~~~~~~~~~~~~~---~~~~L~~L~l~~~~~~~~~----~~~~~~~~~L~~L~l~~~~~~~~  202 (408)
                      .+  ..+|+|++|++.+|.+.+.....+.   .+++|++|+++.|.+....    ...+..+++|+.|+++.|.+.+.
T Consensus       245 ~l~~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~d~  322 (362)
T 2ra8_A          245 LFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLSDE  322 (362)
T ss_dssp             GSCTTTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBCCHH
T ss_pred             HHhcCCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcCCHH
Confidence            12  2367777777777665532222222   3667888888777665321    11223467788888887776543

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A

Probab=98.58  E-value=4.1e-09  Score=83.46  Aligned_cols=84  Identities=7%  Similarity=0.011  Sum_probs=51.6

Q ss_pred             CCCcEEeCCCCccccCCCcCCcCCCCCcEEEcCCCc-cCCcCCccccc----CCCccEEEcCCc-cccccCCcCCCCCCC
Q 037302          283 TNLTSLNLGYNQLSSSIPPELMNCSQLQNLVLSHNT-LSGIVPPEIGN----LTHLRQLDLSHN-FINGTIPSQLGYIPN  356 (408)
Q Consensus       283 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~-~~~~~~~~~~~----~~~L~~L~l~~~-~~~~~~~~~~~~~~~  356 (408)
                      ..|+.|++++|.+++.....+.+|++|++|+|++|. +++.....+..    +++|++|++++| .+++.....+..+++
T Consensus        61 ~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~  140 (176)
T 3e4g_A           61 YKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRN  140 (176)
T ss_dssp             CCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTT
T ss_pred             ceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCC
Confidence            356666666666665555556666777777777764 54433334443    235777777777 366655555666677


Q ss_pred             ccEEeCCCCc
Q 037302          357 ISAVDLSKNN  366 (408)
Q Consensus       357 L~~L~l~~~~  366 (408)
                      |+.|++++|+
T Consensus       141 L~~L~L~~c~  150 (176)
T 3e4g_A          141 LKYLFLSDLP  150 (176)
T ss_dssp             CCEEEEESCT
T ss_pred             CCEEECCCCC
Confidence            7777777774

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1

Probab=98.43  E-value=1.5e-08  Score=82.31  Aligned_cols=112  Identities=13%  Similarity=0.132  Sum_probs=53.3

Q ss_pred             cCCCCCCEEeCCCC-ccccc----CCccccCCCCCcEEeCCCCccccCCC----cCCcCCCCCcEEEcCCCccCCc----
Q 037302          256 GNLKYLDSLSLDGN-NLIGS----IPPTIGYLTNLTSLNLGYNQLSSSIP----PELMNCSQLQNLVLSHNTLSGI----  322 (408)
Q Consensus       256 ~~~~~L~~L~l~~~-~~~~~----~~~~~~~~~~L~~L~l~~~~~~~~~~----~~~~~~~~L~~L~l~~~~~~~~----  322 (408)
                      ...+.|++|++++| .+.+.    ....+...++|++|++++|.+++...    ..+...+.|++|++++|.+.+.    
T Consensus        33 ~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~~~  112 (185)
T 1io0_A           33 NNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILA  112 (185)
T ss_dssp             TTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHH
T ss_pred             hcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHHHH
Confidence            33444555555444 33321    12223344555555555555543221    1223345556666666555432    


Q ss_pred             CCcccccCCCccEEEc--CCccccccC----CcCCCCCCCccEEeCCCCcc
Q 037302          323 VPPEIGNLTHLRQLDL--SHNFINGTI----PSQLGYIPNISAVDLSKNNL  367 (408)
Q Consensus       323 ~~~~~~~~~~L~~L~l--~~~~~~~~~----~~~~~~~~~L~~L~l~~~~l  367 (408)
                      ...++...++|++|++  ++|.+.+..    ...+...++|+.|++++|++
T Consensus       113 l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i  163 (185)
T 1io0_A          113 LVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQ  163 (185)
T ss_dssp             HHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSH
T ss_pred             HHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCC
Confidence            1234444556666666  556665432    22334446666666666655

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A

Probab=98.35  E-value=5.1e-08  Score=77.20  Aligned_cols=82  Identities=11%  Similarity=0.143  Sum_probs=38.4

Q ss_pred             CccEEEccCCcccccCCccccCCCCCCEEeCCCCc-ccccCCccccC----CCCCcEEeCCCCc-cccCCCcCCcCCCCC
Q 037302          236 NLTSLDLSSNQLSGLLPREVGNLKYLDSLSLDGNN-LIGSIPPTIGY----LTNLTSLNLGYNQ-LSSSIPPELMNCSQL  309 (408)
Q Consensus       236 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~-~~~~~~~~~~~----~~~L~~L~l~~~~-~~~~~~~~~~~~~~L  309 (408)
                      .|++|++++|.+++.....+..+++|+.|++++|. +++.....+..    +++|++|++++|. +++.....+..+++|
T Consensus        62 ~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~L  141 (176)
T 3e4g_A           62 KIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRNL  141 (176)
T ss_dssp             CEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTTC
T ss_pred             eEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCCC
Confidence            46666666666555544555555666666666654 33222222222    1244444444442 433333333344444


Q ss_pred             cEEEcCCC
Q 037302          310 QNLVLSHN  317 (408)
Q Consensus       310 ~~L~l~~~  317 (408)
                      ++|++++|
T Consensus       142 ~~L~L~~c  149 (176)
T 3e4g_A          142 KYLFLSDL  149 (176)
T ss_dssp             CEEEEESC
T ss_pred             CEEECCCC
Confidence            44444444

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1

Probab=98.34  E-value=5.6e-08  Score=78.94  Aligned_cols=115  Identities=13%  Similarity=0.131  Sum_probs=69.3

Q ss_pred             hhccCCCCcEEeCCCC-cCCCC----CcccccCCCCCcEEeCCCceeccc----CcccccCCCCCceeecCCcccccc--
Q 037302           38 EIGALSKLEELALPYN-SLTGT----IPAEIGSLRNLVELDLSNNILNGS----IPLEFGNLKDLDALRLRGNKLDGL--  106 (408)
Q Consensus        38 ~~~~~~~L~~L~l~~~-~~~~~----~~~~~~~~~~L~~L~l~~~~~~~~----~~~~~~~l~~L~~L~l~~~~i~~~--  106 (408)
                      .+...++|++|++++| .+.+.    +...+...++|++|++++|.+.+.    +...+...++|++|++++|.+...  
T Consensus        31 ~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~  110 (185)
T 1io0_A           31 IQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGI  110 (185)
T ss_dssp             HHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHH
T ss_pred             HHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHH
Confidence            3455666777777666 55422    223344556677777777766542    223334456677777777766532  


Q ss_pred             --CCCcCCCCCCCCEEEc--CCCeecccC----cccccCCCCCceEeccCCccc
Q 037302          107 --IPSSIGNLTNLTHLDL--SLNQLSGRL----PQEVGNLKNLLSLFLDNNNLT  152 (408)
Q Consensus       107 --~~~~l~~l~~L~~L~l--~~~~~~~~~----~~~~~~l~~L~~L~l~~~~~~  152 (408)
                        ....+...++|++|++  ++|.+....    ...+...+.|++|++++|.+.
T Consensus       111 ~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i~  164 (185)
T 1io0_A          111 LALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQG  164 (185)
T ss_dssp             HHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSHH
T ss_pred             HHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCCC
Confidence              2344556677888888  667765432    234455678888888887765

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A

Probab=97.95  E-value=7.5e-06  Score=69.83  Aligned_cols=113  Identities=24%  Similarity=0.215  Sum_probs=71.2

Q ss_pred             cccccccCCCCCCcE--EEcCCCccc---cccchhhccCCCCcEEeCCCCcCCCC--CcccccCCCCCcEEeCCCceecc
Q 037302            9 ELSQLNFTCFPNLES--IIIPYTLLS---GRIPSEIGALSKLEELALPYNSLTGT--IPAEIGSLRNLVELDLSNNILNG   81 (408)
Q Consensus         9 ~~~~~~~~~~~~L~~--L~l~~~~~~---~~~~~~~~~~~~L~~L~l~~~~~~~~--~~~~~~~~~~L~~L~l~~~~~~~   81 (408)
                      .++-..|...|.|+.  ++++.+...   +........+++|++|+|++|.++..  ++..+..+++|+.|+|++|.+.+
T Consensus       131 ~LdLs~l~~dp~L~~~~l~l~~N~~~~~~~~l~i~~~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~  210 (267)
T 3rw6_A          131 ALDLKGLRSDPDLVAQNIDVVLNRRSCMAATLRIIEENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKS  210 (267)
T ss_dssp             EEECTTGGGCHHHHHTTCCCCTTSHHHHHHHHHHHHHHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCS
T ss_pred             ccCHHHcCCCcchhhcCccccCCHHHHHHHHHHHHHhhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCC
Confidence            344455666677766  555555322   11222235678888889988888753  23455678888899998888874


Q ss_pred             c-CcccccCCCCCceeecCCccccccCC-------CcCCCCCCCCEEEc
Q 037302           82 S-IPLEFGNLKDLDALRLRGNKLDGLIP-------SSIGNLTNLTHLDL  122 (408)
Q Consensus        82 ~-~~~~~~~l~~L~~L~l~~~~i~~~~~-------~~l~~l~~L~~L~l  122 (408)
                      . ....+..+ +|++|.+.+|.+....+       ..+..+++|+.|+-
T Consensus       211 ~~~l~~l~~l-~L~~L~L~~Npl~~~~~~~~~y~~~il~~~P~L~~LDg  258 (267)
T 3rw6_A          211 ERELDKIKGL-KLEELWLDGNSLCDTFRDQSTYISAIRERFPKLLRLDG  258 (267)
T ss_dssp             GGGGGGGTTS-CCSEEECTTSTTGGGCSSHHHHHHHHHHHCTTCCEESS
T ss_pred             chhhhhcccC-CcceEEccCCcCccccCcchhHHHHHHHHCcccCeECC
Confidence            3 11223333 88889998888764333       23556788887763

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A

Probab=97.93  E-value=5.8e-06  Score=70.52  Aligned_cols=63  Identities=29%  Similarity=0.328  Sum_probs=29.7

Q ss_pred             CCCCCcEEeCCCCccccC--CCcCCcCCCCCcEEEcCCCccCCcCCcccccCC--CccEEEcCCccccc
Q 037302          281 YLTNLTSLNLGYNQLSSS--IPPELMNCSQLQNLVLSHNTLSGIVPPEIGNLT--HLRQLDLSHNFING  345 (408)
Q Consensus       281 ~~~~L~~L~l~~~~~~~~--~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~--~L~~L~l~~~~~~~  345 (408)
                      .+++|+.|++++|.++..  .+..+..+++|+.|+|++|.+.+.  ..+..++  +|++|++++|++.+
T Consensus       168 ~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~--~~l~~l~~l~L~~L~L~~Npl~~  234 (267)
T 3rw6_A          168 NIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE--RELDKIKGLKLEELWLDGNSLCD  234 (267)
T ss_dssp             HCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG--GGGGGGTTSCCSEEECTTSTTGG
T ss_pred             hCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc--hhhhhcccCCcceEEccCCcCcc
Confidence            345555555555555431  112233455555555555555433  1222222  55555555555554

>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1

Probab=96.81  E-value=0.00018  Score=57.94  Aligned_cols=38  Identities=21%  Similarity=0.306  Sum_probs=16.1

Q ss_pred             CCccEEEccCC-ccccc----CCccccCCCCCCEEeCCCCccc
Q 037302          235 TNLTSLDLSSN-QLSGL----LPREVGNLKYLDSLSLDGNNLI  272 (408)
Q Consensus       235 ~~L~~L~l~~~-~~~~~----~~~~~~~~~~L~~L~l~~~~~~  272 (408)
                      +.|++|+++++ .+.+.    ...++..-..|+.|++++|.+.
T Consensus        41 ~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~ig   83 (197)
T 1pgv_A           41 TDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAIS   83 (197)
T ss_dssp             SSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCB
T ss_pred             CCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCC
Confidence            44555555543 33321    1222233344555555554443

>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1

Probab=96.71  E-value=0.00034  Score=56.39  Aligned_cols=110  Identities=9%  Similarity=0.073  Sum_probs=48.2

Q ss_pred             CCCCCCEEeCCCC-ccccc----CCccccCCCCCcEEeCCCCccccCCCcC----CcCCCCCcEEEcCCCccCCcC----
Q 037302          257 NLKYLDSLSLDGN-NLIGS----IPPTIGYLTNLTSLNLGYNQLSSSIPPE----LMNCSQLQNLVLSHNTLSGIV----  323 (408)
Q Consensus       257 ~~~~L~~L~l~~~-~~~~~----~~~~~~~~~~L~~L~l~~~~~~~~~~~~----~~~~~~L~~L~l~~~~~~~~~----  323 (408)
                      .-+.|++|+++++ .+.+.    +..++..-..|+.|+|++|.+.+.....    +...+.|++|+|+.|.+....    
T Consensus        39 ~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~al  118 (197)
T 1pgv_A           39 DDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARL  118 (197)
T ss_dssp             TCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHH
T ss_pred             cCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHHH
Confidence            3345555555543 33221    1223334455555555555554332222    223455555555555554221    


Q ss_pred             CcccccCCCccEEEcCCcc---cccc----CCcCCCCCCCccEEeCCCCc
Q 037302          324 PPEIGNLTHLRQLDLSHNF---INGT----IPSQLGYIPNISAVDLSKNN  366 (408)
Q Consensus       324 ~~~~~~~~~L~~L~l~~~~---~~~~----~~~~~~~~~~L~~L~l~~~~  366 (408)
                      .+++..-+.|++|+++++.   +.+.    +..++..-++|+.|+++.|.
T Consensus       119 a~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~~~~  168 (197)
T 1pgv_A          119 LRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFAS  168 (197)
T ss_dssp             HHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCCC
T ss_pred             HHHHhhCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEeccCCC
Confidence            1233333445555555432   2211    12233334555555555443

>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*

Probab=95.87  E-value=0.023  Score=42.44  Aligned_cols=35  Identities=29%  Similarity=0.227  Sum_probs=15.0

Q ss_pred             CCcEEeCCCCccccCCCcCCcCCCCCcEEEcCCCc
Q 037302          284 NLTSLNLGYNQLSSSIPPELMNCSQLQNLVLSHNT  318 (408)
Q Consensus       284 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~  318 (408)
                      +|++|+|++|.++......|..+++|+.|.|++|.
T Consensus        32 ~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP   66 (130)
T 3rfe_A           32 DTTELVLTGNNLTALPPGLLDALPALRTAHLGANP   66 (130)
T ss_dssp             TCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSC
T ss_pred             CCCEEECCCCcCCccChhhhhhccccCEEEecCCC
Confidence            34444444444443333334444444444444443

>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*

Probab=95.80  E-value=0.02  Score=42.79  Aligned_cols=36  Identities=31%  Similarity=0.391  Sum_probs=19.9

Q ss_pred             CCcEEEcCCCccCCcCCcccccCCCccEEEcCCccc
Q 037302          308 QLQNLVLSHNTLSGIVPPEIGNLTHLRQLDLSHNFI  343 (408)
Q Consensus       308 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~  343 (408)
                      +|++|+|++|.++.+....|..+++|+.|++.+|+.
T Consensus        32 ~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~   67 (130)
T 3rfe_A           32 DTTELVLTGNNLTALPPGLLDALPALRTAHLGANPW   67 (130)
T ss_dssp             TCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCC
T ss_pred             CCCEEECCCCcCCccChhhhhhccccCEEEecCCCe
Confidence            455555555555555455555555555555555544

>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}

Probab=93.40  E-value=0.067  Score=37.67  Aligned_cols=49  Identities=12%  Similarity=0.093  Sum_probs=36.2

Q ss_pred             CCCcccccccccCCCCCCcEEEcCCCccccccchhhccCCCCcEEeCCCC
Q 037302            4 NGNAAELSQLNFTCFPNLESIIIPYTLLSGRIPSEIGALSKLEELALPYN   53 (408)
Q Consensus         4 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~   53 (408)
                      +..|+.|+..+|.+|..|+.+.+... +...-..+|..|.+|+.+.+.+.
T Consensus         5 g~~vt~I~~~aF~~c~~L~~i~iP~~-v~~Ig~~aF~~C~~L~~i~~~~~   53 (100)
T 2lz0_A            5 GEPVVGMDKSLFAGNTVIREITVQPN-IGLLYDGMFSGCTALEKLILTGE   53 (100)
T ss_dssp             CCCCCSSCSCTTTTCTTCCCEEECTT-SSCCCTTSSTTCTTCCCEEECCS
T ss_pred             CCccCEecHHHhcCCCCCcEEEcCCc-hheEcHHHHhccCCccEEEEcCC
Confidence            45789999999999999999999754 22233455777788888777654

>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}

Probab=90.66  E-value=0.3  Score=34.26  Aligned_cols=46  Identities=11%  Similarity=0.110  Sum_probs=26.8

Q ss_pred             cccCCCcCCcCCCCCcEEEcCCCccCCcCCcccccCCCccEEEcCCc
Q 037302          295 LSSSIPPELMNCSQLQNLVLSHNTLSGIVPPEIGNLTHLRQLDLSHN  341 (408)
Q Consensus       295 ~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~  341 (408)
                      ++.+...+|.+|.+|+.+.+-.. ++.+...+|.+|.+|+.+.+.+.
T Consensus         8 vt~I~~~aF~~c~~L~~i~iP~~-v~~Ig~~aF~~C~~L~~i~~~~~   53 (100)
T 2lz0_A            8 VVGMDKSLFAGNTVIREITVQPN-IGLLYDGMFSGCTALEKLILTGE   53 (100)
T ss_dssp             CCSSCSCTTTTCTTCCCEEECTT-SSCCCTTSSTTCTTCCCEEECCS
T ss_pred             cCEecHHHhcCCCCCcEEEcCCc-hheEcHHHHhccCCccEEEEcCC
Confidence            44444555666666666666553 33355566666666666666554

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	408
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	4e-23
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	2e-21
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	3e-16
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	1e-14
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	8e-14
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	2e-08
d1ozna_	284	c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept	1e-20
d1ozna_	284	c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept	2e-20
d1ozna_	284	c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept	1e-19
d1ozna_	284	c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept	1e-19
d1ozna_	284	c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept	1e-12
d1ozna_	284	c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept	1e-12
d1ozna_	284	c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept	4e-10
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	7e-20
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	2e-19
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	7e-10
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	1e-06
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	4e-19
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	1e-18
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	2e-18
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	1e-13
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	4e-09
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	8e-15
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	2e-09
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	2e-07
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	8e-06
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	0.001
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	1e-10
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	7e-09
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	1e-08
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	5e-08
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	5e-07
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	6e-07
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	1e-05
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	2e-05
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	5e-05
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	7e-05
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	9e-05
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	1e-04
d2astb2	284	c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p1	2e-10
d2astb2	284	c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p1	1e-09
d2astb2	284	c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p1	6e-09
d2astb2	284	c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p1	7e-09
d2astb2	284	c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p1	6e-08
d1h6ta2	210	c.10.2.1 (A:31-240) Internalin B {Listeria monocyt	2e-09
d1h6ta2	210	c.10.2.1 (A:31-240) Internalin B {Listeria monocyt	3e-07
d1h6ta2	210	c.10.2.1 (A:31-240) Internalin B {Listeria monocyt	4e-06
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	8e-09
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	3e-08
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	5e-08
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	3e-07
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	1e-06
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	3e-06
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	6e-05
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	7e-05
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	5e-04
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	0.001
d1h6ua2	227	c.10.2.1 (A:36-262) Internalin H {Listeria monocyt	9e-09
d1h6ua2	227	c.10.2.1 (A:36-262) Internalin H {Listeria monocyt	2e-08
d1h6ua2	227	c.10.2.1 (A:36-262) Internalin H {Listeria monocyt	8e-08
d1h6ua2	227	c.10.2.1 (A:36-262) Internalin H {Listeria monocyt	1e-06
d1h6ua2	227	c.10.2.1 (A:36-262) Internalin H {Listeria monocyt	2e-04
d1h6ua2	227	c.10.2.1 (A:36-262) Internalin H {Listeria monocyt	7e-04
d1h6ua2	227	c.10.2.1 (A:36-262) Internalin H {Listeria monocyt	0.002
d1xwdc1	242	c.10.2.7 (C:18-259) Follicle-stimulating hormone r	2e-07
d1xwdc1	242	c.10.2.7 (C:18-259) Follicle-stimulating hormone r	1e-05
d1xwdc1	242	c.10.2.7 (C:18-259) Follicle-stimulating hormone r	2e-05
d1xwdc1	242	c.10.2.7 (C:18-259) Follicle-stimulating hormone r	4e-04
d1xwdc1	242	c.10.2.7 (C:18-259) Follicle-stimulating hormone r	0.002
d1a9na_	162	c.10.2.4 (A:) Splicesomal U2A' protein {Human (Hom	5e-07
d1a9na_	162	c.10.2.4 (A:) Splicesomal U2A' protein {Human (Hom	1e-05
d1a9na_	162	c.10.2.4 (A:) Splicesomal U2A' protein {Human (Hom	2e-05
d1a9na_	162	c.10.2.4 (A:) Splicesomal U2A' protein {Human (Hom	9e-05
d2omxa2	199	c.10.2.1 (A:37-235) Internalin B {Listeria monocyt	7e-07
d2omxa2	199	c.10.2.1 (A:37-235) Internalin B {Listeria monocyt	2e-04
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	1e-06
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	2e-05
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	2e-05
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	3e-05
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	0.001
d1koha1	162	c.10.2.3 (A:201-362) mRNA export factor tap {Human	2e-06
d1koha1	162	c.10.2.3 (A:201-362) mRNA export factor tap {Human	7e-06
d1koha1	162	c.10.2.3 (A:201-362) mRNA export factor tap {Human	2e-04
d1koha1	162	c.10.2.3 (A:201-362) mRNA export factor tap {Human	3e-04
d1koha1	162	c.10.2.3 (A:201-362) mRNA export factor tap {Human	5e-04
d1koha1	162	c.10.2.3 (A:201-362) mRNA export factor tap {Human	0.003
d2ifga3	156	c.10.2.7 (A:36-191) High affinity nerve growth fac	3e-06
d2ifga3	156	c.10.2.7 (A:36-191) High affinity nerve growth fac	8e-05
d1w8aa_	192	c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanoga	6e-06
d1w8aa_	192	c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanoga	2e-04
d1w8aa_	192	c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanoga	2e-04
d1w8aa_	192	c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanoga	0.001
d2ca6a1	344	c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal dom	3e-05
d2ca6a1	344	c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal dom	1e-04
d2ca6a1	344	c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal dom	8e-04
d2ca6a1	344	c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal dom	9e-04
d2ca6a1	344	c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal dom	0.002
d1m9la_	198	c.10.3.1 (A:) Outer arm dynein light chain 1 {Gree	6e-04

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 96.3 bits (238), Expect = 4e-23
 Identities = 60/289 (20%), Positives = 104/289 (35%), Gaps = 15/289 (5%)

Query: 82  SIPLEFGNLKDLDALRLRGNKLDGLIPSSIGNLTNLTHLDLSLNQLSGRLPQEVGNLKNL 141
            +P +     D   L L+ NK+  +      NL NL  L L  N++S   P     L  L
Sbjct: 24  KVPKDLP--PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKL 81

Query: 142 LSLFLDNNNLTGPIPSTLYHLNQLSNLYLAYNNLVGPLPKEVGNMKNLDSLLLNRNSLTG 201
             L+L  N L          L +L         +   +   +  M  ++ L  N    +G
Sbjct: 82  ERLYLSKNQLKELPEKMPKTLQELRVHENEITKVRKSVFNGLNQMIVVE-LGTNPLKSSG 140

Query: 202 PIPSTIGYLNLGGKLDLSHNRLDSPIPPTIGNLTNLTSLDLSSNQLSGLLPREVGNLKYL 261
                   +     + ++   + + IP   G   +LT L L  N+++ +    +  L  L
Sbjct: 141 IENGAFQGMKKLSYIRIADTNI-TTIPQ--GLPPSLTELHLDGNKITKVDAASLKGLNNL 197

Query: 262 DSLSLDGNNLIGSIPPTIGYLTNLTSLNLGYNQLSSSIPPELMNCSQLQNLVLSHNTLSG 321
             L L  N++      ++    +L  L+L  N+L   +P  L +   +Q + L +N +S 
Sbjct: 198 AKLGLSFNSISAVDNGSLANTPHLRELHLNNNKL-VKVPGGLADHKYIQVVYLHNNNISA 256

Query: 322 I------VPPEIGNLTHLRQLDLSHNFINGT--IPSQLGYIPNISAVDL 362
           I       P           + L  N +      PS    +   +AV L
Sbjct: 257 IGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQL 305

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 91.6 bits (226), Expect = 2e-21
 Identities = 62/287 (21%), Positives = 116/287 (40%), Gaps = 14/287 (4%)

Query: 34  RIPSEIGALSKLEELALPYNSLTGTIPAEIGSLRNLVELDLSNNILNGSIPLEFGNLKDL 93
           ++P ++        L L  N +T     +  +L+NL  L L NN ++   P  F  L  L
Sbjct: 24  KVPKDLP--PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKL 81

Query: 94  DALRLRGNKLDGLIPSSIGNLTNLTHLDLSLNQLSGRLPQEVGNLKNLLSLFLDNNNLTG 153
           + L L  N+L  L       L  L   +  + ++   +   + N   ++ L  +    +G
Sbjct: 82  ERLYLSKNQLKELPEKMPKTLQELRVHENEITKVRKSVFNGL-NQMIVVELGTNPLKSSG 140

Query: 154 PIPSTLYHLNQLSNLYLAYNNLVGPLPKEVGNMKNLDSLLLNRNSLTGPIPSTIGYLNLG 213
                   + +LS + +A  N+        G   +L  L L+ N +T    +++  LN  
Sbjct: 141 IENGAFQGMKKLSYIRIADTNITTIPQ---GLPPSLTELHLDGNKITKVDAASLKGLNNL 197

Query: 214 GKLDLSHNRLDSPIPPTIGNLTNLTSLDLSSNQLSGLLPREVGNLKYLDSLSLDGNNLIG 273
            KL LS N + +    ++ N  +L  L L++N+L   +P  + + KY+  + L  NN+  
Sbjct: 198 AKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLVK-VPGGLADHKYIQVVYLHNNNISA 256

Query: 274 ------SIPPTIGYLTNLTSLNLGYNQLS-SSIPPELMNCSQLQNLV 313
                   P       + + ++L  N +    I P    C  ++  V
Sbjct: 257 IGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAV 303

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 76.6 bits (187), Expect = 3e-16
 Identities = 49/263 (18%), Positives = 98/263 (37%), Gaps = 12/263 (4%)

Query: 9   ELSQLNFTCFPNLESIIIPYTLLSGRIPSEIGALSKLEELALPYNSLTGTIPAEIGSLRN 68
           E+   +F    NL ++I+    +S   P     L KLE L L  N L         +L+ 
Sbjct: 45  EIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLKELPEKMPKTLQE 104

Query: 69  LVELDLSNNILNGSIPLEFGNLKDLDALRLRGNKLDGLIPSSIGNLTNLTHLDLSLNQLS 128
           L   +     +  S+      +  ++ L     K  G+   +   +  L+++ ++   ++
Sbjct: 105 LRVHENEITKVRKSVFNGLNQMIVVE-LGTNPLKSSGIENGAFQGMKKLSYIRIADTNIT 163

Query: 129 GRLPQEVGNLKNLLSLFLDNNNLTGPIPSTLYHLNQLSNLYLAYNNLVGPLPKEVGNMKN 188
                  G   +L  L LD N +T    ++L  LN L+ L L++N++       + N  +
Sbjct: 164 TIPQ---GLPPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPH 220

Query: 189 LDSLLLNRNSLTGPIPSTIGYLNLGGKLDLSHNRLDS------PIPPTIGNLTNLTSLDL 242
           L  L LN N L         +  +   + L +N + +        P       + + + L
Sbjct: 221 LRELHLNNNKLVKVPGGLADHKYI-QVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSL 279

Query: 243 SSNQLSGLLPREVGNLKYLDSLS 265
            SN +      +    + +   +
Sbjct: 280 FSNPVQ-YWEIQPSTFRCVYVRA 301

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 72.0 bits (175), Expect = 1e-14
 Identities = 34/176 (19%), Positives = 70/176 (39%), Gaps = 8/176 (4%)

Query: 216 LDLSHNRLDSPIPPTIGNLTNLTSLDLSSNQLSGLLPREVGNLKYLDSLSLDGNNLIGSI 275
           +  S   L+  +P  +    +   LDL +N+++ +   +  NLK L +L L  N +    
Sbjct: 15  VQCSDLGLEK-VPKDLP--PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKIS 71

Query: 276 PPTIGYLTNLTSLNLGYNQLSSSIPPELMNCSQLQNLVLSHNTLSGIVPPEIGNLTHLRQ 335
           P     L  L  L L  NQL   +P ++      Q L +  N ++ +       L  +  
Sbjct: 72  PGAFAPLVKLERLYLSKNQL-KELPEKMPKTL--QELRVHENEITKVRKSVFNGLNQMIV 128

Query: 336 LDLSHNFIN--GTIPSQLGYIPNISAVDLSKNNLSGVVPASVRIIPKLIVSENNLE 389
           ++L  N +   G        +  +S + ++  N++ +       + +L +  N + 
Sbjct: 129 VELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQGLPPSLTELHLDGNKIT 184

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 69.3 bits (168), Expect = 8e-14
 Identities = 42/201 (20%), Positives = 71/201 (35%), Gaps = 4/201 (1%)

Query: 187 KNLDSLLLNRNSLTGPIPSTIGYLNLGGKLDLSHNRLDSPIPPTIGNLTNLTSLDLSSNQ 246
            +   L L  N +T         L     L L +N++    P     L  L  L LS NQ
Sbjct: 31  PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQ 90

Query: 247 LSGLLPREVGNLKYLDSLSLDGNNLIGSIPPTIGYLTNLTSLNLGYNQLSSSIPPELMNC 306
           L  L  +    L+ L     +   +  S+   +  +  +  L     + S          
Sbjct: 91  LKELPEKMPKTLQELRVHENEITKVRKSVFNGLNQMIVV-ELGTNPLKSSGIENGAFQGM 149

Query: 307 SQLQNLVLSHNTLSGIVPPEIGNLTHLRQLDLSHNFINGTIPSQLGYIPNISAVDLSKNN 366
            +L  + ++   ++ I     G    L +L L  N I     + L  + N++ + LS N+
Sbjct: 150 KKLSYIRIADTNITTIPQ---GLPPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNS 206

Query: 367 LSGVVPASVRIIPKLIVSENN 387
           +S V   S+   P L     N
Sbjct: 207 ISAVDNGSLANTPHLRELHLN 227

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 53.1 bits (126), Expect = 2e-08
 Identities = 39/180 (21%), Positives = 65/180 (36%), Gaps = 10/180 (5%)

Query: 2   DNNGNAAELSQLNFTCFPNLESIIIPYTLLSGRIPSEIGALSKLEELALPYNSLTGTIPA 61
           +N       S  N      +  +       SG        + KL  + +   ++T TIP 
Sbjct: 109 ENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNIT-TIPQ 167

Query: 62  EIGSLRNLVELDLSNNILNGSIPLEFGNLKDLDALRLRGNKLDGLIPSSIGNLTNLTHLD 121
             G   +L EL L  N +          L +L  L L  N +  +   S+ N  +L  L 
Sbjct: 168 --GLPPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELH 225

Query: 122 LSLNQLSGRLPQEVGNLKNLLSLFLDNNNLTG------PIPSTLYHLNQLSNLYLAYNNL 175
           L+ N+L    P  + + K +  ++L NNN++         P         S + L  N +
Sbjct: 226 LNNNKLVKV-PGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPV 284

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 89.1 bits (219), Expect = 1e-20
 Identities = 57/263 (21%), Positives = 88/263 (33%), Gaps = 7/263 (2%)

Query: 35  IPSEIGALSKLEELALPYNSLTGTIPAEIGSLRNL-VELDLSNNILNGSIPLEFGNLKDL 93
           +P  I A    + + L  N ++    A   + RNL +    SN +         G     
Sbjct: 26  VPVGIPAA--SQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLE 83

Query: 94  DALRLRGNKLDGLIPSSIGNLTNLTHLDLSLNQLSGRLPQEVGNLKNLLSLFLDNNNLTG 153
                   +L  + P++   L  L  L L    L    P     L  L  L+L +N L  
Sbjct: 84  QLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQA 143

Query: 154 PIPSTLYHLNQLSNLYLAYNNLVGPLPKEVGNMKNLDSLLLNRNSLTGPIPSTIGYLNLG 213
               T   L  L++L+L  N +     +    + +LD LLL++N +    P     L   
Sbjct: 144 LPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRL 203

Query: 214 GKLDLSHNRLDSPIPPTIGNLTNLTSLDLSSNQLSGLLPREVGNLKYLDSLSLDGNNLIG 273
             L L  N L +     +  L  L  L L+ N       R      +L       + +  
Sbjct: 204 MTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVC-DCRARPLWAWLQKFRGSSSEVPC 262

Query: 274 SIPPTIGYLTNLTSLNLGYNQLS 296
           S+P     L       L  N L 
Sbjct: 263 SLPQR---LAGRDLKRLAANDLQ 282

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 88.3 bits (217), Expect = 2e-20
 Identities = 66/264 (25%), Positives = 98/264 (37%), Gaps = 7/264 (2%)

Query: 107 IPSSIGNLTNLTHLDLSLNQLSGRLPQEVGNLKNLLSLFLDNNNLTGPIPSTLYHLNQLS 166
           +P  I        + L  N++S          +NL  L+L +N L     +    L  L 
Sbjct: 26  VPVGIP--AASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLE 83

Query: 167 NLYLAYNNLVGPL-PKEVGNMKNLDSLLLNRNSLTGPIPSTIGYLNLGGKLDLSHNRLDS 225
            L L+ N  +  + P     +  L +L L+R  L    P     L     L L  N L +
Sbjct: 84  QLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQA 143

Query: 226 PIPPTIGNLTNLTSLDLSSNQLSGLLPREVGNLKYLDSLSLDGNNLIGSIPPTIGYLTNL 285
               T  +L NLT L L  N++S +  R    L  LD L L  N +    P     L  L
Sbjct: 144 LPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRL 203

Query: 286 TSLNLGYNQLSSSIPPELMNCSQLQNLVLSHNTLSGIVPPEIGNLTHLRQLDLSHNFING 345
            +L L  N LS+     L     LQ L L+ N               L++   S + +  
Sbjct: 204 MTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCD-CRARPLWAWLQKFRGSSSEVPC 262

Query: 346 TIPSQLGYIPNISAVDLSKNNLSG 369
           ++P +L          L+ N+L G
Sbjct: 263 SLPQRLA---GRDLKRLAANDLQG 283

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 86.4 bits (212), Expect = 1e-19
 Identities = 55/273 (20%), Positives = 92/273 (33%), Gaps = 5/273 (1%)

Query: 118 THLDLSLNQLSGRLPQEVGNLKNLLSLFLDNNNLTGPIPSTLYHLNQLSNLYLAYNNLVG 177
                    L   +P  +        +FL  N ++    ++      L+ L+L  N L  
Sbjct: 14  VTTSCPQQGLQ-AVPVGIPA--ASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLAR 70

Query: 178 PLPKEVGNMKNLDSLLLNRNSLTGPI-PSTIGYLNLGGKLDLSHNRLDSPIPPTIGNLTN 236
                   +  L+ L L+ N+    + P+T   L     L L    L    P     L  
Sbjct: 71  IDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAA 130

Query: 237 LTSLDLSSNQLSGLLPREVGNLKYLDSLSLDGNNLIGSIPPTIGYLTNLTSLNLGYNQLS 296
           L  L L  N L  L      +L  L  L L GN +          L +L  L L  N+++
Sbjct: 131 LQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVA 190

Query: 297 SSIPPELMNCSQLQNLVLSHNTLSGIVPPEIGNLTHLRQLDLSHNFINGTIPSQLGYIPN 356
              P    +  +L  L L  N LS +    +  L  L+ L L+ N       +       
Sbjct: 191 HVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDCRA-RPLWAW 249

Query: 357 ISAVDLSKNNLSGVVPASVRIIPKLIVSENNLE 389
           +     S + +   +P  +       ++ N+L+
Sbjct: 250 LQKFRGSSSEVPCSLPQRLAGRDLKRLAANDLQ 282

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 86.4 bits (212), Expect = 1e-19
 Identities = 65/270 (24%), Positives = 98/270 (36%), Gaps = 8/270 (2%)

Query: 53  NSLTGTIPAEIGSLRNLVELDLSNNILNGSIPLEFGNLKDLDALRLRGNKLDGLIPSSIG 112
             L   +P  I +      + L  N ++      F   ++L  L L  N L  +  ++  
Sbjct: 21  QGLQ-AVPVGIPA--ASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFT 77

Query: 113 NLTNLTHLDLSLNQLSGRL-PQEVGNLKNLLSLFLDNNNLTGPIPSTLYHLNQLSNLYLA 171
            L  L  LDLS N     + P     L  L +L LD   L    P     L  L  LYL 
Sbjct: 78  GLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQ 137

Query: 172 YNNLVGPLPKEVGNMKNLDSLLLNRNSLTGPIPSTIGYLNLGGKLDLSHNRLDSPIPPTI 231
            N L         ++ NL  L L+ N ++         L+   +L L  NR+    P   
Sbjct: 138 DNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAF 197

Query: 232 GNLTNLTSLDLSSNQLSGLLPREVGNLKYLDSLSLDGNNLIGSIPPTIGYLTNLTSLNLG 291
            +L  L +L L +N LS L    +  L+ L  L L+ N  +            L      
Sbjct: 198 RDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDCRA-RPLWAWLQKFRGS 256

Query: 292 YNQLSSSIPPELMNCSQLQNLVLSHNTLSG 321
            +++  S+P  L      +   L+ N L G
Sbjct: 257 SSEVPCSLPQRLAGRDLKR---LAANDLQG 283

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 65.6 bits (158), Expect = 1e-12
 Identities = 43/188 (22%), Positives = 67/188 (35%), Gaps = 4/188 (2%)

Query: 14  NFTCFPNLESIIIPYTLLSGRIPSEIGALSKLEELALPYNSLTGTIPAEIGSLRNLVELD 73
            F     L ++ +    L    P     L+ L+ L L  N+L          L NL  L 
Sbjct: 100 TFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLF 159

Query: 74  LSNNILNGSIPLEFGNLKDLDALRLRGNKLDGLIPSSIGNLTNLTHLDLSLNQLSGRLPQ 133
           L  N ++      F  L  LD L L  N++  + P +  +L  L  L L  N LS    +
Sbjct: 160 LHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTE 219

Query: 134 EVGNLKNLLSLFLDNNNLTGPIPSTLYHLNQLSNLYLAYNNLVGPLPKEVGNMKNLDSLL 193
            +  L+ L  L L++N       +       L     + + +   LP+ +          
Sbjct: 220 ALAPLRALQYLRLNDNPWVCDCRA-RPLWAWLQKFRGSSSEVPCSLPQRLAGRDLKR--- 275

Query: 194 LNRNSLTG 201
           L  N L G
Sbjct: 276 LAANDLQG 283

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 65.2 bits (157), Expect = 1e-12
 Identities = 47/196 (23%), Positives = 73/196 (37%), Gaps = 4/196 (2%)

Query: 28  YTLLSGRIPSEIGALSKLEELALPYNSLTGTIPAEIGSLRNLVELDLSNNILNGSIPLEF 87
              L    P+    L +L  L L    L    P     L  L  L L +N L       F
Sbjct: 90  NAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTF 149

Query: 88  GNLKDLDALRLRGNKLDGLIPSSIGNLTNLTHLDLSLNQLSGRLPQEVGNLKNLLSLFLD 147
            +L +L  L L GN++  +   +   L +L  L L  N+++   P    +L  L++L+L 
Sbjct: 150 RDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLF 209

Query: 148 NNNLTGPIPSTLYHLNQLSNLYLAYNNLVGPLPKEVGNMKNLDSLLLNRNSLTGPIPSTI 207
            NNL+      L  L  L  L L  N  V    +       L     + + +   +P  +
Sbjct: 210 ANNLSALPTEALAPLRALQYLRLNDNPWVCD-CRARPLWAWLQKFRGSSSEVPCSLPQRL 268

Query: 208 GYLNLGGKLDLSHNRL 223
              +L     L+ N L
Sbjct: 269 AGRDL---KRLAANDL 281

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 57.9 bits (138), Expect = 4e-10
 Identities = 37/175 (21%), Positives = 56/175 (32%), Gaps = 4/175 (2%)

Query: 3   NNGNAAELSQLNFTCFPNLESIIIPYTLLSGRIPSEIGALSKLEELALPYNSLTGTIPAE 62
           +     EL    F     L+ + +    L          L  L  L L  N ++      
Sbjct: 113 DRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERA 172

Query: 63  IGSLRNLVELDLSNNILNGSIPLEFGNLKDLDALRLRGNKLDGLIPSSIGNLTNLTHLDL 122
              L +L  L L  N +    P  F +L  L  L L  N L  L   ++  L  L +L L
Sbjct: 173 FRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRL 232

Query: 123 SLNQLSGRLPQEVGNLKNLLSLFLDNNNLTGPIPSTLYHLNQLSNLYLAYNNLVG 177
           + N       +       L      ++ +   +P     L       LA N+L G
Sbjct: 233 NDNPWVC-DCRARPLWAWLQKFRGSSSEVPCSLPQ---RLAGRDLKRLAANDLQG 283

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 88.1 bits (217), Expect = 7e-20
 Identities = 82/357 (22%), Positives = 139/357 (38%), Gaps = 49/357 (13%)

Query: 42  LSKLEELALPYNSLTGTIPAEIGSLRNLVELDLSNNILNGSIPLEFGNLKDLDALRLRGN 101
           L ++  L      +       +  L NL +++ SNN L    P    NL  L  + +  N
Sbjct: 43  LDQVTTLQADRLGIKSI--DGVEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNN 98

Query: 102 KLDGLIPSSIGNLTNLTHLDLSLNQLSGRLPQEVG---------NLKNLLSLFLDNNNLT 152
           ++  + P +         L  +       L               + ++ +L    +   
Sbjct: 99  QIADITPLANLTNLTGLTLFNNQITDIDPLKNLTNLNRLELSSNTISDISALSGLTSLQQ 158

Query: 153 GPIPSTLYHLNQLSNL----YLAYNNLVGPLPKEVGNMKNLDSLLLNRNSLTGPIPSTIG 208
               + +  L  L+NL     L  ++        +  + NL+SL+   N ++   P  I 
Sbjct: 159 LSFGNQVTDLKPLANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQISDITPLGI- 217

Query: 209 YLNLGGKLDLSHNRLDSPIPPTIGNLTNLTSLDLSSNQLSGLLPREVGNLKYLDSLSLDG 268
             NL  +L L+ N+L      T+ +LTNLT LDL++NQ+S L P  +  L  L  L L  
Sbjct: 218 LTNLD-ELSLNGNQLKDI--GTLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGA 272

Query: 269 NNLIGSIP--------------------PTIGYLTNLTSLNLGYNQLSSSIPPELMNCSQ 308
           N +    P                      I  L NLT L L +N +S   P  + + ++
Sbjct: 273 NQISNISPLAGLTALTNLELNENQLEDISPISNLKNLTYLTLYFNNISDISP--VSSLTK 330

Query: 309 LQNLVLSHNTLSGIVPPEIGNLTHLRQLDLSHNFINGTIPSQLGYIPNISAVDLSKN 365
           LQ L  ++N +S      + NLT++  L   HN I+   P  L  +  I+ + L+  
Sbjct: 331 LQRLFFANNKVSD--VSSLANLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQ 383

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 86.6 bits (213), Expect = 2e-19
 Identities = 84/365 (23%), Positives = 143/365 (39%), Gaps = 49/365 (13%)

Query: 41  ALSKLEELALPYNSLTGTIPAEIGSLRNLVELDLSNNILNGSIPLEFGNLKDLDALRLRG 100
           AL++  +  L   ++T T+      L  +  L      +  SI      L +L  +    
Sbjct: 20  ALAEKMKTVLGKTNVTDTVSQT--DLDQVTTLQADRLGIK-SID-GVEYLNNLTQINFSN 75

Query: 101 NKLDGLIPSSIGNLTNLTHLDLSLNQLSGRLPQEVGNLKNLLSLFLDNNNLTGPIPSTLY 160
           N+L  + P  + NLT L  + ++ NQ++   P         L+LF +      P+ +   
Sbjct: 76  NQLTDITP--LKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITDIDPLKNLTN 133

Query: 161 H---------LNQLSNLYLAYNNLVGPLPKEVGNMKNLDSL----LLNRNSLTGPIPSTI 207
                     ++ +S L    +        +V ++K L +L     L+ +S      S +
Sbjct: 134 LNRLELSSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVSDISVL 193

Query: 208 GYLNLGGKLDLSHNRLDSPIPPTIGNLTNLTSLDLSSNQLSGLLPREVGNLKYLDSLSLD 267
             L     L  ++N++    P  I   TNL  L L+ NQL       + +L  L  L L 
Sbjct: 194 AKLTNLESLIATNNQISDITPLGIL--TNLDELSLNGNQLKD--IGTLASLTNLTDLDLA 249

Query: 268 GNNLIGSIPPTIGYLTNLTSLNLGYNQLSSSIP--------------------PELMNCS 307
            N +    P  +  LT LT L LG NQ+S+  P                      + N  
Sbjct: 250 NNQISNLAP--LSGLTKLTELKLGANQISNISPLAGLTALTNLELNENQLEDISPISNLK 307

Query: 308 QLQNLVLSHNTLSGIVPPEIGNLTHLRQLDLSHNFINGTIPSQLGYIPNISAVDLSKNNL 367
            L  L L  N +S I P  + +LT L++L  ++N +  +  S L  + NI+ +    N +
Sbjct: 308 NLTYLTLYFNNISDISP--VSSLTKLQRLFFANNKV--SDVSSLANLTNINWLSAGHNQI 363

Query: 368 SGVVP 372
           S + P
Sbjct: 364 SDLTP 368

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 58.1 bits (139), Expect = 7e-10
 Identities = 61/333 (18%), Positives = 107/333 (32%), Gaps = 42/333 (12%)

Query: 89  NLKDLDALRLRGNKLDGLIPSSIGNLTNLTHLDLSLNQLSGRLPQEVGNLKNLLSLFLDN 148
            L +     L    +   +  +  +L  +T L      +       V  L NL  +   N
Sbjct: 20  ALAEKMKTVLGKTNVTDTVSQT--DLDQVTTLQADRLGIKS--IDGVEYLNNLTQINFSN 75

Query: 149 NNLTGPIP-STLYHLNQLSNLYLAYNNLVGPLPKEVGNMKNLDSLLLNRNSLTGPIPSTI 207
           N LT   P   L  L  +        ++             L +  +        + +  
Sbjct: 76  NQLTDITPLKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITDIDPLKNLTNLN 135

Query: 208 GYLNLGGKLDLSHNRLDSPIPPTIGNLTNLTSLDLSSNQLSGLLPREVGN---------- 257
                   +              +     +T L   +N  +        N          
Sbjct: 136 RLELSSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVSDISVLAK 195

Query: 258 LKYLDSLSLDGNNLIGSIPPTIGYLTNLTSLNLGYNQLSSSIPPELMNCSQLQNLVLSHN 317
           L  L+SL    N +    P  I   TNL  L+L  NQL       L + + L +L L++N
Sbjct: 196 LTNLESLIATNNQISDITPLGIL--TNLDELSLNGNQLKD--IGTLASLTNLTDLDLANN 251

Query: 318 TLSGIVPPEIGNLTHLRQLDLSHNFINGTIP--------------------SQLGYIPNI 357
            +S + P  +  LT L +L L  N I+   P                    S +  + N+
Sbjct: 252 QISNLAP--LSGLTKLTELKLGANQISNISPLAGLTALTNLELNENQLEDISPISNLKNL 309

Query: 358 SAVDLSKNNLSGVVP-ASVRIIPKLIVSENNLE 389
           + + L  NN+S + P +S+  + +L  + N + 
Sbjct: 310 TYLTLYFNNISDISPVSSLTKLQRLFFANNKVS 342

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 47.7 bits (112), Expect = 1e-06
 Identities = 19/88 (21%), Positives = 38/88 (43%), Gaps = 6/88 (6%)

Query: 14  NFTCFPNLESIIIPYTLLSGRIPSEIGALSKLEELALPYNSLTGTIPAEIGSLRNLVELD 73
             +   NL  + + +  +S   P  + +L+KL+ L    N ++    + + +L N+  L 
Sbjct: 302 PISNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFANNKVSD--VSSLANLTNINWLS 357

Query: 74  LSNNILNGSIPLEFGNLKDLDALRLRGN 101
             +N ++   PL   NL  +  L L   
Sbjct: 358 AGHNQISDLTPL--ANLTRITQLGLNDQ 383

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 85.2 bits (209), Expect = 4e-19
 Identities = 66/266 (24%), Positives = 101/266 (37%), Gaps = 27/266 (10%)

Query: 37  SEIGALSKLEELALPYNSLTG--TIPAEIGSLRNLVELDLSNNI-LNGSIPLEFGNLKDL 93
                  ++  L L   +L     IP+ + +L  L  L +     L G IP     L  L
Sbjct: 44  DTDTQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQL 103

Query: 94  DALRLRGNKLDGLIPSSIGNLTNLTHLDLSLNQLSGRLPQEVGNLKNLLSLFLDNNNLTG 153
             L +    + G IP  +  +  L  LD S N LSG LP  + +L NL+ +  D N ++G
Sbjct: 104 HYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISG 163

Query: 154 PIPSTLYHLNQLSNLYLAYNNLVGPLPKEVGNMKNLDSLLLNRNSL-------------- 199
            IP +    ++L        N +           NL  + L+RN L              
Sbjct: 164 AIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLNLAFVDLSRNMLEGDASVLFGSDKNT 223

Query: 200 ---------TGPIPSTIGYLNLGGKLDLSHNRLDSPIPPTIGNLTNLTSLDLSSNQLSGL 250
                           +G       LDL +NR+   +P  +  L  L SL++S N L G 
Sbjct: 224 QKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGE 283

Query: 251 LPREVGNLKYLDSLSLDGNNLIGSIP 276
           +P + GNL+  D  +   N  +   P
Sbjct: 284 IP-QGGNLQRFDVSAYANNKCLCGSP 308

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 84.0 bits (206), Expect = 1e-18
 Identities = 69/266 (25%), Positives = 109/266 (40%), Gaps = 6/266 (2%)

Query: 64  GSLRNLVELDLSNNILNG--SIPLEFGNLKDLDALRLRGN-KLDGLIPSSIGNLTNLTHL 120
                +  LDLS   L     IP    NL  L+ L + G   L G IP +I  LT L +L
Sbjct: 47  TQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYL 106

Query: 121 DLSLNQLSGRLPQEVGNLKNLLSLFLDNNNLTGPIPSTLYHLNQLSNLYLAYNNLVGPLP 180
            ++   +SG +P  +  +K L++L    N L+G +P ++  L  L  +    N + G +P
Sbjct: 107 YITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIP 166

Query: 181 KEVGNMKNLDSLLLNRNSLTGPIPSTIGYLNLGGKLDLSHNRLDSPIPPTIGNLTNLTSL 240
              G+   L + +    +                 +DLS N L+       G+  N T  
Sbjct: 167 DSYGSFSKLFTSMTISRNRLTGKIPPTFANLNLAFVDLSRNMLEGDASVLFGSDKN-TQK 225

Query: 241 DLSSNQLSGLLPREVGNLKYLDSLSLDGNNLIGSIPPTIGYLTNLTSLNLGYNQLSSSIP 300
              +         +VG  K L+ L L  N + G++P  +  L  L SLN+ +N L   I 
Sbjct: 226 IHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEI- 284

Query: 301 PELMNCSQLQNLVLSHNT-LSGIVPP 325
           P+  N  +      ++N  L G   P
Sbjct: 285 PQGGNLQRFDVSAYANNKCLCGSPLP 310

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 82.9 bits (203), Expect = 2e-18
 Identities = 65/268 (24%), Positives = 113/268 (42%), Gaps = 7/268 (2%)

Query: 104 DGLIPSSIGNLTNLTHLDLSLNQLSGR--LPQEVGNLKNLLSLFLDNN-NLTGPIPSTLY 160
            G++  +      + +LDLS   L     +P  + NL  L  L++    NL GPIP  + 
Sbjct: 39  LGVLCDTDTQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIA 98

Query: 161 HLNQLSNLYLAYNNLVGPLPKEVGNMKNLDSLLLNRNSLTGPIPSTIGYLNLGGKLDLSH 220
            L QL  LY+ + N+ G +P  +  +K L +L  + N+L+G +P +I  L     +    
Sbjct: 99  KLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDG 158

Query: 221 NRLDSPIPPTIGNLTNLTS-LDLSSNQLSGLLPREVGNLKYLDSLSLDGNNLIGSIPPTI 279
           NR+   IP + G+ + L + + +S N+L+G +P    NL           N++      +
Sbjct: 159 NRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLNLAF--VDLSRNMLEGDASVL 216

Query: 280 GYLTNLTSLNLGYNQLSSSIPPELMNCSQLQNLVLSHNTLSGIVPPEIGNLTHLRQLDLS 339
                 T          +    ++     L  L L +N + G +P  +  L  L  L++S
Sbjct: 217 FGSDKNTQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVS 276

Query: 340 HNFINGTIPSQLGYIPNISAVDLSKNNL 367
            N + G IP   G +        + N  
Sbjct: 277 FNNLCGEIPQ-GGNLQRFDVSAYANNKC 303

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 68.6 bits (166), Expect = 1e-13
 Identities = 64/258 (24%), Positives = 107/258 (41%), Gaps = 6/258 (2%)

Query: 136 GNLKNLLSLFLDNNNLTG--PIPSTLYHLNQLSNLYLAYN-NLVGPLPKEVGNMKNLDSL 192
                + +L L   NL    PIPS+L +L  L+ LY+    NLVGP+P  +  +  L  L
Sbjct: 47  TQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYL 106

Query: 193 LLNRNSLTGPIPSTIGYLNLGGKLDLSHNRLDSPIPPTIGNLTNLTSLDLSSNQLSGLLP 252
            +   +++G IP  +  +     LD S+N L   +PP+I +L NL  +    N++SG +P
Sbjct: 107 YITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIP 166

Query: 253 REVGNLKYLDSLSLDGNNLIGSIPPTIGYLTNLTSLNLGYNQLSSSIPPELMNCSQLQNL 312
              G+   L +      N +    P      NL         +       L    +    
Sbjct: 167 DSYGSFSKLFTSMTISRNRLTGKIPPTFANLNLAF-VDLSRNMLEGDASVLFGSDKNTQK 225

Query: 313 VLSHNTLSGIVPPEIGNLTHLRQLDLSHNFINGTIPSQLGYIPNISAVDLSKNNLSGVVP 372
           +            ++G   +L  LDL +N I GT+P  L  +  + ++++S NNL G +P
Sbjct: 226 IHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIP 285

Query: 373 ASVRI--IPKLIVSENNL 388
               +        + N  
Sbjct: 286 QGGNLQRFDVSAYANNKC 303

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 55.1 bits (131), Expect = 4e-09
 Identities = 18/72 (25%), Positives = 30/72 (41%), Gaps = 1/72 (1%)

Query: 14  NFTCFPNLESIIIPYTLLSGRIPSEIGALSKLEELALPYNSLTGTIPAEIGSLRNLVELD 73
                 NL  + +    + G +P  +  L  L  L + +N+L G IP + G+L+      
Sbjct: 239 KVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIP-QGGNLQRFDVSA 297

Query: 74  LSNNILNGSIPL 85
            +NN      PL
Sbjct: 298 YANNKCLCGSPL 309

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 71.7 bits (174), Expect = 8e-15
 Identities = 51/211 (24%), Positives = 81/211 (38%), Gaps = 7/211 (3%)

Query: 62  EIGSLRNLVELDLSNNILNGSIPLEFGNLKDLDALRLRGNKLDGLIPSSIGNLTNLTHLD 121
           E+  + + +E++     L  ++P +    KD   L L  N L     +++   T LT L+
Sbjct: 5   EVSKVASHLEVNCDKRNLT-ALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLN 61

Query: 122 LSLNQLSGRLPQEVGNLKNLLSLFLDNNNLTGPIPSTLYHLNQLSNLYLAYNNLVGPLPK 181
           L   +      Q  G L  L +L L +N L          L  L+ L +++N L      
Sbjct: 62  LDRAE--LTKLQVDGTLPVLGTLDLSHNQLQSLPLLG-QTLPALTVLDVSFNRLTSLPLG 118

Query: 182 EVGNMKNLDSLLLNRNSLTGPIPSTIGYLNLGGKLDLSHNRLDSPIPPTIGNLTNLTSLD 241
            +  +  L  L L  N L    P  +       KL L++N L       +  L NL +L 
Sbjct: 119 ALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLL 178

Query: 242 LSSNQLSGLLPREVGNLKYLDSLSLDGNNLI 272
           L  N L   +P+       L    L GN  +
Sbjct: 179 LQENSLYT-IPKGFFGSHLLPFAFLHGNPWL 208

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 55.5 bits (132), Expect = 2e-09
 Identities = 50/208 (24%), Positives = 72/208 (34%), Gaps = 7/208 (3%)

Query: 134 EVGNLKNLLSLFLDNNNLTGPIPSTLYHLNQLSNLYLAYNNLVGPLPKEVGNMKNLDSLL 193
           EV  + + L +  D  NLT  +P  L      + L+L+ N L       +     L  L 
Sbjct: 5   EVSKVASHLEVNCDKRNLTA-LPPDL--PKDTTILHLSENLLYTFSLATLMPYTRLTQLN 61

Query: 194 LNRNSLTGPIPSTIGYLNLGGKLDLSHNRLDSPIPPTIGNLTNLTSLDLSSNQLSGLLPR 253
           L+R          +             +     +P     L  LT LD+S N+L+ L   
Sbjct: 62  LDRAE---LTKLQVDGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLG 118

Query: 254 EVGNLKYLDSLSLDGNNLIGSIPPTIGYLTNLTSLNLGYNQLSSSIPPELMNCSQLQNLV 313
            +  L  L  L L GN L    P  +     L  L+L  N L+      L     L  L+
Sbjct: 119 ALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLL 178

Query: 314 LSHNTLSGIVPPEIGNLTHLRQLDLSHN 341
           L  N+L   +P        L    L  N
Sbjct: 179 LQENSLY-TIPKGFFGSHLLPFAFLHGN 205

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 49.7 bits (117), Expect = 2e-07
 Identities = 50/213 (23%), Positives = 63/213 (29%), Gaps = 30/213 (14%)

Query: 35  IPSEIGALSKLEELALPYNSLTGTIPAEIGSLRNLVELDLSNNILNGSIPLEFGNLKDLD 94
           +P ++        L L  N L     A +     L +L+L    L               
Sbjct: 25  LPPDLPKD--TTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELT-------------- 68

Query: 95  ALRLRGNKLDGLIPSSIGNLTNLTHLDLSLNQLSGRLPQEVGNLKNLLSLFLDNNNLTGP 154
                            G L  L  LDLS NQL             L  L +  N LT  
Sbjct: 69  ------------KLQVDGTLPVLGTLDLSHNQLQSLPLLGQTL-PALTVLDVSFNRLTSL 115

Query: 155 IPSTLYHLNQLSNLYLAYNNLVGPLPKEVGNMKNLDSLLLNRNSLTGPIPSTIGYLNLGG 214
               L  L +L  LYL  N L    P  +     L+ L L  N+LT      +  L    
Sbjct: 116 PLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLD 175

Query: 215 KLDLSHNRLDSPIPPTIGNLTNLTSLDLSSNQL 247
            L L  N L + IP        L    L  N  
Sbjct: 176 TLLLQENSLYT-IPKGFFGSHLLPFAFLHGNPW 207

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.7 bits (104), Expect = 8e-06
 Identities = 15/65 (23%), Positives = 25/65 (38%), Gaps = 3/65 (4%)

Query: 278 TIGYLTNLTSLNLGYNQLSSSIPPELMNCSQLQNLVLSHNTLSGIVPPEIGNLTHLRQLD 337
            +  + +   +N     L++ +PP+L        L LS N L       +   T L QL+
Sbjct: 5   EVSKVASHLEVNCDKRNLTA-LPPDL--PKDTTILHLSENLLYTFSLATLMPYTRLTQLN 61

Query: 338 LSHNF 342
           L    
Sbjct: 62  LDRAE 66

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.8 bits (86), Expect = 0.001
 Identities = 16/53 (30%), Positives = 19/53 (35%), Gaps = 1/53 (1%)

Query: 52  YNSLTGTIPAEIGSLRNLVELDLSNNILNGSIPLEFGNLKDLDALRLRGNKLD 104
            N+LT      +  L NL  L L  N    +IP  F     L    L GN   
Sbjct: 157 NNNLTELPAGLLNGLENLDTLLLQEN-SLYTIPKGFFGSHLLPFAFLHGNPWL 208

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 60.4 bits (144), Expect = 1e-10
 Identities = 18/91 (19%), Positives = 32/91 (35%), Gaps = 5/91 (5%)

Query: 236 NLTSLDLSSNQLSGL-LPREVGNLKYLDSLSLDGNNL----IGSIPPTIGYLTNLTSLNL 290
           ++ SLD+   +LS       +  L+    + LD   L       I   +     L  LNL
Sbjct: 3   DIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNL 62

Query: 291 GYNQLSSSIPPELMNCSQLQNLVLSHNTLSG 321
             N+L       ++   Q  +  +   +L  
Sbjct: 63  RSNELGDVGVHCVLQGLQTPSCKIQKLSLQN 93

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 55.0 bits (130), Expect = 7e-09
 Identities = 17/91 (18%), Positives = 34/91 (37%), Gaps = 5/91 (5%)

Query: 284 NLTSLNLGYNQLSSSIPPELM-NCSQLQNLVLSHNTLSGIVPPEIG----NLTHLRQLDL 338
           ++ SL++   +LS +   EL+    Q Q + L    L+     +I         L +L+L
Sbjct: 3   DIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNL 62

Query: 339 SHNFINGTIPSQLGYIPNISAVDLSKNNLSG 369
             N +       +       +  + K +L  
Sbjct: 63  RSNELGDVGVHCVLQGLQTPSCKIQKLSLQN 93

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 54.2 bits (128), Expect = 1e-08
 Identities = 18/99 (18%), Positives = 32/99 (32%), Gaps = 5/99 (5%)

Query: 68  NLVELDLSNNILNGSIPLE-FGNLKDLDALRLRGNKLDG----LIPSSIGNLTNLTHLDL 122
           ++  LD+    L+ +   E    L+    +RL    L       I S++     L  L+L
Sbjct: 3   DIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNL 62

Query: 123 SLNQLSGRLPQEVGNLKNLLSLFLDNNNLTGPIPSTLYH 161
             N+L       V       S  +   +L     +    
Sbjct: 63  RSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGC 101

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 52.3 bits (123), Expect = 5e-08
 Identities = 22/91 (24%), Positives = 34/91 (37%), Gaps = 5/91 (5%)

Query: 116 NLTHLDLSLNQLS-GRLPQEVGNLKNLLSLFLDNNNLTG----PIPSTLYHLNQLSNLYL 170
           ++  LD+   +LS  R  + +  L+    + LD+  LT      I S L     L+ L L
Sbjct: 3   DIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNL 62

Query: 171 AYNNLVGPLPKEVGNMKNLDSLLLNRNSLTG 201
             N L       V       S  + + SL  
Sbjct: 63  RSNELGDVGVHCVLQGLQTPSCKIQKLSLQN 93

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 49.2 bits (115), Expect = 5e-07
 Identities = 17/83 (20%), Positives = 29/83 (34%), Gaps = 9/83 (10%)

Query: 257 NLKYLDSLSLDGNNL----IGSIPPTIGYLTNLTSLNLGYNQLSSSIPPELM-----NCS 307
               L  L L   ++      S+  T+    +L  L+L  N L  +   +L+        
Sbjct: 367 PGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGC 426

Query: 308 QLQNLVLSHNTLSGIVPPEIGNL 330
            L+ LVL     S  +   +  L
Sbjct: 427 LLEQLVLYDIYWSEEMEDRLQAL 449

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 49.2 bits (115), Expect = 6e-07
 Identities = 14/92 (15%), Positives = 30/92 (32%), Gaps = 8/92 (8%)

Query: 89  NLKDLDALRLRGNKL-DGLIPSSIGNLTNLTHLDLSLNQLSGR----LPQEVGNLKNLLS 143
           +++ LD   ++  +L D      +  L     + L    L+      +   +     L  
Sbjct: 3   DIQSLD---IQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAE 59

Query: 144 LFLDNNNLTGPIPSTLYHLNQLSNLYLAYNNL 175
           L L +N L       +    Q  +  +   +L
Sbjct: 60  LNLRSNELGDVGVHCVLQGLQTPSCKIQKLSL 91

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.0 bits (104), Expect = 1e-05
 Identities = 16/89 (17%), Positives = 28/89 (31%), Gaps = 5/89 (5%)

Query: 188 NLDSLLLNRNSLT-GPIPSTIGYLNLGGKLDLSHNRLD----SPIPPTIGNLTNLTSLDL 242
           ++ SL +    L+       +  L     + L    L       I   +     L  L+L
Sbjct: 3   DIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNL 62

Query: 243 SSNQLSGLLPREVGNLKYLDSLSLDGNNL 271
            SN+L  +    V       S  +   +L
Sbjct: 63  RSNELGDVGVHCVLQGLQTPSCKIQKLSL 91

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.6 bits (103), Expect = 2e-05
 Identities = 15/87 (17%), Positives = 27/87 (31%), Gaps = 9/87 (10%)

Query: 87  FGNLKDLDALRLRGNKLDGL----IPSSIGNLTNLTHLDLSLNQLSGRLPQEVG-----N 137
                 L  L L    +       + +++    +L  LDLS N L      ++       
Sbjct: 365 GQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQP 424

Query: 138 LKNLLSLFLDNNNLTGPIPSTLYHLNQ 164
              L  L L +   +  +   L  L +
Sbjct: 425 GCLLEQLVLYDIYWSEEMEDRLQALEK 451

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.0 bits (99), Expect = 5e-05
 Identities = 24/114 (21%), Positives = 40/114 (35%), Gaps = 29/114 (25%)

Query: 43  SKLEELALPYNSLTGT----IPAEIGSLRNLVELDLSNNILNGSIPLEFGNLKDLDALRL 98
           S L  L L    ++ +    + A + +  +L ELDLSNN L  +  L+      ++++R 
Sbjct: 369 SVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQL-----VESVRQ 423

Query: 99  RGNKLDGLIPSSIGNLTNLTHLDLSLNQLSGRLPQEVGNLKNLLSLFLDNNNLT 152
                             L  L L     S  +         L +L  D  +L 
Sbjct: 424 --------------PGCLLEQLVLYDIYWSEEMEDR------LQALEKDKPSLR 457

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.3 bits (97), Expect = 7e-05
 Identities = 17/87 (19%), Positives = 30/87 (34%), Gaps = 9/87 (10%)

Query: 303 LMNCSQLQNLVLSHNTLSGIVPPEIG----NLTHLRQLDLSHNFINGTIPSQLG-----Y 353
               S L+ L L+   +S      +         LR+LDLS+N +      QL       
Sbjct: 365 GQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQP 424

Query: 354 IPNISAVDLSKNNLSGVVPASVRIIPK 380
              +  + L     S  +   ++ + K
Sbjct: 425 GCLLEQLVLYDIYWSEEMEDRLQALEK 451

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.9 bits (96), Expect = 9e-05
 Identities = 16/85 (18%), Positives = 32/85 (37%), Gaps = 5/85 (5%)

Query: 20 NLESIIIPYTLLS-GRIPSEIGALSKLEELALPYNSLTG----TIPAEIGSLRNLVELDL 74
          +++S+ I    LS  R    +  L + + + L    LT      I + +     L EL+L
Sbjct: 3  DIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNL 62

Query: 75 SNNILNGSIPLEFGNLKDLDALRLR 99
           +N L               + +++
Sbjct: 63 RSNELGDVGVHCVLQGLQTPSCKIQ 87

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.5 bits (95), Expect = 1e-04
 Identities = 17/93 (18%), Positives = 27/93 (29%), Gaps = 23/93 (24%)

Query: 216 LDLSHNRLD----SPIPPTIGNLTNLTSLDLSSNQLSGLLPREVGNLKYLDSLSLDGNNL 271
           L L+   +     S +  T+    +L  LDLS+N L      ++         S+     
Sbjct: 374 LWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVE-------SVRQPG- 425

Query: 272 IGSIPPTIGYLTNLTSLNLGYNQLSSSIPPELM 304
                        L  L L     S  +   L 
Sbjct: 426 -----------CLLEQLVLYDIYWSEEMEDRLQ 447

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 59.0 bits (141), Expect = 2e-10
 Identities = 40/270 (14%), Positives = 87/270 (32%), Gaps = 16/270 (5%)

Query: 48  LALPYNSLTGTIPAEIGSLRNLVELDLSNNILNGSIPLEFGNLKDLDALRLRGNKL-DGL 106
           L L   +L   +   + S + ++      + ++  +   F   + +  + L  + +    
Sbjct: 5   LDLTGKNLHPDVTGRLLS-QGVIAFRCPRSFMDQPLAEHFSPFR-VQHMDLSNSVIEVST 62

Query: 107 IPSSIGNLTNLTHLDLSLNQLSGRLPQEVGNLKNLLSLFLDNNNLTGPIP--------ST 158
           +   +   + L +L L   +LS  +   +    NL+ L L   +              S 
Sbjct: 63  LHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSR 122

Query: 159 LYHLNQLSNLYLAYNNLVGPLPKEVGNMKNLDSLLLNRNSLTGPIPSTIGYLNLGGKLDL 218
           L  LN          ++   +      +  L+     +N     + + +        LDL
Sbjct: 123 LDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDL 182

Query: 219 SHNRLDSP-IPPTIGNLTNLTSLDLSS-NQLSGLLPREVGNLKYLDSLSLDGNNLIGSIP 276
           S + +           L  L  L LS    +      E+G +  L +L + G    G++ 
Sbjct: 183 SDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGIVPDGTLQ 242

Query: 277 PTIGYLTNLTSLNLGYNQLSSSIPPELMNC 306
                   L  L +  +  ++   P + N 
Sbjct: 243 LLK---EALPHLQINCSHFTTIARPTIGNK 269

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 56.7 bits (135), Expect = 1e-09
 Identities = 49/274 (17%), Positives = 82/274 (29%), Gaps = 17/274 (6%)

Query: 31  LSGR--IPSEIGALSKLEELALP-YNSLTGTIPAEIGSLRNLVELDLSNN-ILNGSIPLE 86
           L+G+   P   G L     +A     S      AE  S   +  +DLSN+ I   ++   
Sbjct: 7   LTGKNLHPDVTGRLLSQGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVSTLHGI 66

Query: 87  FGNLKDLDALRLRGNKLDGLIPSSIGNLTNLTHLDLSLNQLSGRLPQEVGNLKNLLSLFL 146
                 L  L L G +L   I +++   +NL  L+LS          +           L
Sbjct: 67  LSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDEL 126

Query: 147 DNNNLTGPIPSTLYHLNQLSNLYLAYNNLVG---------PLPKEVGNMKNLDSLLLNRN 197
           + +         +       +  +   NL G                    +   L +  
Sbjct: 127 NLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSV 186

Query: 198 SLTGPIPSTIGYLNLGGKLDLSH-NRLDSPIPPTIGNLTNLTSLDLSSNQLSGLLPREVG 256
            L          LN    L LS    +       +G +  L +L +      G L     
Sbjct: 187 MLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGIVPDGTLQLLKE 246

Query: 257 NLKYLDSLSLDGNNLIGSIPPTIGYLTNLTSLNL 290
            L +L    ++ ++      PTIG   N     +
Sbjct: 247 ALPHLQ---INCSHFTTIARPTIGNKKNQEIWGI 277

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 54.3 bits (129), Expect = 6e-09
 Identities = 20/106 (18%), Positives = 44/106 (41%), Gaps = 3/106 (2%)

Query: 238 TSLDLSSNQLSGLLPREVGNLKYLDSLSLDGNNLIGSIPPTIGYLTNLTSLNLGYNQLS- 296
            +LDL+   L   +   + +   + +     + +   +         +  ++L  + +  
Sbjct: 3   QTLDLTGKNLHPDVTGRLLSQGVI-AFRCPRSFMDQPLAEHFS-PFRVQHMDLSNSVIEV 60

Query: 297 SSIPPELMNCSQLQNLVLSHNTLSGIVPPEIGNLTHLRQLDLSHNF 342
           S++   L  CS+LQNL L    LS  +   +   ++L +L+LS   
Sbjct: 61  STLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCS 106

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 54.3 bits (129), Expect = 7e-09
 Identities = 41/283 (14%), Positives = 80/283 (28%), Gaps = 22/283 (7%)

Query: 72  LDLSNNILNGSIPLEFGNLKDLDALRLRGNKLDGLIPSSIGNLTNLTHLDLSLNQLSGR- 130
           LDL+   L+  +     +   + A R   + +D  +     +   + H+DLS + +    
Sbjct: 5   LDLTGKNLHPDVTGRLLSQG-VIAFRCPRSFMDQPLAEH-FSPFRVQHMDLSNSVIEVST 62

Query: 131 LPQEVGNLKNLLSLFLDNNNLTGPIPSTLYHLNQLSNLYLAYNNLVGPLPKEVGNMKNLD 190
           L   +     L +L L+   L+ PI +TL   + L  L L+  +       +        
Sbjct: 63  LHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSR 122

Query: 191 SLLLNRNSLTGPIPSTIGYLNLGGKLDLSHNRLDSPIPPTIGNLTNLTSLDLSSNQLSGL 250
              LN +         +          ++   L         +  +              
Sbjct: 123 LDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLS-------------- 168

Query: 251 LPREVGNLKYLDSLSLDGNNLIGSIPPTIGYLTNLTSLNLGY-NQLSSSIPPELMNCSQL 309
                     +     D   L          L  L  L+L     +      EL     L
Sbjct: 169 -TLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTL 227

Query: 310 QNLVLSHNTLSGIVPPEIGNLTHLRQLDLSHNFINGTIPSQLG 352
           + L +      G +      L HL+   ++ +         +G
Sbjct: 228 KTLQVFGIVPDGTLQLLKEALPHLQ---INCSHFTTIARPTIG 267

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 51.6 bits (122), Expect = 6e-08
 Identities = 43/256 (16%), Positives = 87/256 (33%), Gaps = 37/256 (14%)

Query: 168 LYLAYNNLVGPLPKEVGNMKNLDSLLLNRNSLTGPIPSTIGYLNLGGKLDLSHNRL-DSP 226
           L L   NL   +   + + + + +    R+ +  P+        +   +DLS++ +  S 
Sbjct: 5   LDLTGKNLHPDVTGRLLS-QGVIAFRCPRSFMDQPLAEHFSPFRVQ-HMDLSNSVIEVST 62

Query: 227 IPPTIGNLTNLTSLDLSSNQLSGLLPREVGNLKYLDSLSLDGNNLI--GSIPPTIGYLTN 284
           +   +   + L +L L   +LS  +   +     L  L+L G +     ++   +   + 
Sbjct: 63  LHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSR 122

Query: 285 LTSLN------------------------------LGYNQLSSSIPPELMNCSQLQNLVL 314
           L  LN                                 N   S +   +  C  L +L L
Sbjct: 123 LDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDL 182

Query: 315 SHNTL-SGIVPPEIGNLTHLRQLDLSH-NFINGTIPSQLGYIPNISAVDLSKNNLSGVVP 372
           S + +       E   L +L+ L LS    I      +LG IP +  + +      G + 
Sbjct: 183 SDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGIVPDGTLQ 242

Query: 373 ASVRIIPKLIVSENNL 388
                +P L ++ ++ 
Sbjct: 243 LLKEALPHLQINCSHF 258

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]} Length = 210

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

 Score = 55.0 bits (131), Expect = 2e-09
 Identities = 49/222 (22%), Positives = 78/222 (35%), Gaps = 22/222 (9%)

Query: 51  PYNSLTGTIPAEIG------SLRNLVELDLSNNILNGSIPLEFGNLKDLDALRLRGNKLD 104
           P  S T T+P  I       +    ++ +L    +  ++      L  +D +    + + 
Sbjct: 2   PLGSETITVPTPIKQIFSDDAFAETIKDNLKKKSVTDAVTQN--ELNSIDQIIANNSDIK 59

Query: 105 GLIPSSIGNLTNLTHLDLSLNQLSGRLPQEVGNLKNLLSLFLDNNNLTGPIPSTLYHLNQ 164
            +    I  L N+T L L+ N+L+    + + NLKNL  LFLD N +            +
Sbjct: 60  SVQG--IQYLPNVTKLFLNGNKLTD--IKPLANLKNLGWLFLDENKVKDLSSLKDLKKLK 115

Query: 165 LSNLYLAYNNLVGPLPKEVGNMKNLDSLLLNRNSLTGPIPSTIGYLNLGGKLDLSHNRLD 224
             +L     + +  L               +       I        L     LS     
Sbjct: 116 SLSLEHNGISDINGLVHLPQLE--------SLYLGNNKITDITVLSRLTKLDTLSLEDNQ 167

Query: 225 SPIPPTIGNLTNLTSLDLSSNQLSGLLPREVGNLKYLDSLSL 266
                 +  LT L +L LS N +S L  R +  LK LD L L
Sbjct: 168 ISDIVPLAGLTKLQNLYLSKNHISDL--RALAGLKNLDVLEL 207

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]} Length = 210

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

 Score = 48.5 bits (114), Expect = 3e-07
 Identities = 41/203 (20%), Positives = 70/203 (34%), Gaps = 16/203 (7%)

Query: 137 NLKNLLSLFLDNNNLTGPIPSTLYHLNQLSNLYLAYNNLVGPLPKEVGNMKNLDSLLLNR 196
                +   L   ++T  +  T   LN +  +    +++       +  + N+  L LN 
Sbjct: 22  AFAETIKDNLKKKSVTDAV--TQNELNSIDQIIANNSDIKSVQG--IQYLPNVTKLFLNG 77

Query: 197 NSLTGPIPSTIGYLNLGGKLDLSHNRLDSPIPPTIGNLTNLTSLDLSSNQLSGLLPREVG 256
           N LT   P           L                +         S +     +    G
Sbjct: 78  NKLTDIKPL--------ANLKNLGWLFLDENKVKDLSSLKDLKKLKSLSLEHNGISDING 129

Query: 257 NLKYLDSLSLDGNNLIGSIPPTIGYLTNLTSLNLGYNQLSSSIPPELMNCSQLQNLVLSH 316
            +      SL   N   +    +  LT L +L+L  NQ+S  +P  L   ++LQNL LS 
Sbjct: 130 LVHLPQLESLYLGNNKITDITVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSK 187

Query: 317 NTLSGIVPPEIGNLTHLRQLDLS 339
           N +S +    +  L +L  L+L 
Sbjct: 188 NHISDL--RALAGLKNLDVLELF 208

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]} Length = 210

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

 Score = 45.0 bits (105), Expect = 4e-06
 Identities = 35/193 (18%), Positives = 65/193 (33%), Gaps = 20/193 (10%)

Query: 185 NMKNLDSLLLNRNSLTGPIPSTIGYLNLGGKLDLSHNRLDSPIPPTIGNLTNLTSLDLSS 244
                    L + S+T  +  T   LN   ++  +++ + S     I  L N+T L L+ 
Sbjct: 22  AFAETIKDNLKKKSVTDAV--TQNELNSIDQIIANNSDIKSVQG--IQYLPNVTKLFLNG 77

Query: 245 NQLSGLLPREVGNLKYLDSLSLDGNNLIGSIPPTIGYLTNLTSLNLGYNQLSSSIPPELM 304
           N+L+ + P           L  +    + S+       +     N   +       P+L 
Sbjct: 78  NKLTDIKPLANLKNLGWLFLDENKVKDLSSLKDLKKLKSLSLEHNGISDINGLVHLPQLE 137

Query: 305 NCSQLQNLVLSHNTLSGIV--------------PPEIGNLTHLRQLDLSHNFINGTIPSQ 350
           +     N +     LS +                  +  LT L+ L LS N I  +    
Sbjct: 138 SLYLGNNKITDITVLSRLTKLDTLSLEDNQISDIVPLAGLTKLQNLYLSKNHI--SDLRA 195

Query: 351 LGYIPNISAVDLS 363
           L  + N+  ++L 
Sbjct: 196 LAGLKNLDVLELF 208

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 54.4 bits (129), Expect = 8e-09
 Identities = 22/93 (23%), Positives = 35/93 (37%), Gaps = 9/93 (9%)

Query: 218 LSHNRLDSPIPPTIGNLTNLTSLDLSSNQLSGLLPREVGNLKYLDSLSLDGNNLIGSIPP 277
              N   + I        +L  L++S+N+L   LP     L+ L   S    N +  +P 
Sbjct: 267 YYLNASSNEIRSLCDLPPSLEELNVSNNKLIE-LPALPPRLERLI-AS---FNHLAEVPE 321

Query: 278 TIGYLTNLTSLNLGYNQLSSSIPPELMNCSQLQ 310
                 NL  L++ YN L    P    +   L+
Sbjct: 322 LPQ---NLKQLHVEYNPL-REFPDIPESVEDLR 350

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 52.5 bits (124), Expect = 3e-08
 Identities = 21/92 (22%), Positives = 35/92 (38%), Gaps = 9/92 (9%)

Query: 50  LPYNSLTGTIPAEIGSLRNLVELDLSNNILNGSIPLEFGNLKDLDALRLRGNKLDGLIPS 109
              N+ +  I +      +L EL++SNN L   +P     L+ L       N L  +   
Sbjct: 267 YYLNASSNEIRSLCDLPPSLEELNVSNNKLI-ELPALPPRLERLI---ASFNHLAEVPEL 322

Query: 110 SIGNLTNLTHLDLSLNQLSGRLPQEVGNLKNL 141
                 NL  L +  N L    P    ++++L
Sbjct: 323 ----PQNLKQLHVEYNPLRE-FPDIPESVEDL 349

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 52.1 bits (123), Expect = 5e-08
 Identities = 19/89 (21%), Positives = 34/89 (38%), Gaps = 9/89 (10%)

Query: 269 NNLIGSIPPTIGYLTNLTSLNLGYNQLSSSIPPELMNCSQLQNLVLSHNTLSGIVPPEIG 328
           N     I        +L  LN+  N+L   +P       +L+ L+ S N L+ + P    
Sbjct: 270 NASSNEIRSLCDLPPSLEELNVSNNKLIE-LPALP---PRLERLIASFNHLAEV-PELPQ 324

Query: 329 NLTHLRQLDLSHNFINGTIPSQLGYIPNI 357
           NL  L    + +N +    P     + ++
Sbjct: 325 NLKQL---HVEYNPLR-EFPDIPESVEDL 349

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 49.8 bits (117), Expect = 3e-07
 Identities = 20/93 (21%), Positives = 33/93 (35%), Gaps = 10/93 (10%)

Query: 169 YLAYNNLVGPLPKEVGNMKNLDSLLLNRNSLTGPIPSTIGYLNLGGKLDLSHNRLDSPIP 228
               N     +        +L+ L ++ N L   +P+    L    +L  S N L   +P
Sbjct: 266 LYYLNASSNEIRSLCDLPPSLEELNVSNNKLIE-LPALPPRLE---RLIASFNHLAE-VP 320

Query: 229 PTIGNLTNLTSLDLSSNQLSGL--LPREVGNLK 259
                  NL  L +  N L     +P  V +L+
Sbjct: 321 ELPQ---NLKQLHVEYNPLREFPDIPESVEDLR 350

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 47.9 bits (112), Expect = 1e-06
 Identities = 23/96 (23%), Positives = 39/96 (40%), Gaps = 11/96 (11%)

Query: 74  LSNNILNGSIPLEFGNLKDLDALRLRGNKLDGLIPSSIGNLTNLTHLDLSLNQLSGRLPQ 133
              N  +  I         L+ L +  NKL   +P+    L     L  S N L+  +P+
Sbjct: 267 YYLNASSNEIRSLCDLPPSLEELNVSNNKLIE-LPALPPRLE---RLIASFNHLA-EVPE 321

Query: 134 EVGNLKNLLSLFLDNNNLTG--PIPSTLYHLNQLSN 167
              NLK    L ++ N L     IP ++  L ++++
Sbjct: 322 LPQNLK---QLHVEYNPLREFPDIPESVEDL-RMNS 353

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 46.7 bits (109), Expect = 3e-06
 Identities = 20/104 (19%), Positives = 34/104 (32%), Gaps = 16/104 (15%)

Query: 289 NLGYNQLSSSIPPELMNCSQLQNLVLSHNTLSGIVPPEIGNLTHLRQLDLSHNFINGTIP 348
               N  S+ I         L+ L +S+N L  + P     L  L     S N +   +P
Sbjct: 266 LYYLNASSNEIRSLCDLPPSLEELNVSNNKLIEL-PALPPRLERL---IASFNHLA-EVP 320

Query: 349 SQLGYIPNISAVDLSKNNLSGVVPASVRIIPKLIVSENNLELEN 392
                  N+  + +  N L           P +  S  +L + +
Sbjct: 321 ELPQ---NLKQLHVEYNPLRE--------FPDIPESVEDLRMNS 353

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 42.5 bits (98), Expect = 6e-05
 Identities = 18/80 (22%), Positives = 33/80 (41%), Gaps = 9/80 (11%)

Query: 14  NFTCFPNLESIIIPYTLLSGRIPSEIGALSKLEELALPYNSLTGTIPAEIGSLRNLVELD 73
                P+LE + +    L   +P+      +LE L   +N L   +P    +L+   +L 
Sbjct: 279 LCDLPPSLEELNVSNNKLI-ELPALPP---RLERLIASFNHLA-EVPELPQNLK---QLH 330

Query: 74  LSNNILNGSIPLEFGNLKDL 93
           +  N L    P    +++DL
Sbjct: 331 VEYNPLR-EFPDIPESVEDL 349

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 42.1 bits (97), Expect = 7e-05
 Identities = 22/96 (22%), Positives = 38/96 (39%), Gaps = 10/96 (10%)

Query: 119 HLDLSLNQLSGRLPQEVGNLKNLLSLFLDNNNLTGPIPSTLYHLNQLSNLYLAYNNLVGP 178
                LN  S  +        +L  L + NN L   +P+      +L  L  ++N+L   
Sbjct: 264 PNLYYLNASSNEIRSLCDLPPSLEELNVSNNKLIE-LPAL---PPRLERLIASFNHLAE- 318

Query: 179 LPKEVGNMKNLDSLLLNRNSLTG--PIPSTIGYLNL 212
           +P+   N+K L    +  N L     IP ++  L +
Sbjct: 319 VPELPQNLKQLH---VEYNPLREFPDIPESVEDLRM 351

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 39.4 bits (90), Expect = 5e-04
 Identities = 18/62 (29%), Positives = 28/62 (45%), Gaps = 5/62 (8%)

Query: 215 KLDLSHNRLDSPIPPTIGNLTNLTSLDLSSNQLSGLLPREVGNLKYLDSLSLDGNNLIGS 274
           +L+L++  L S +P    +L    SL  S N L+  LP    +LK L   + +   L   
Sbjct: 42  ELELNNLGLSS-LPELPPHLE---SLVASCNSLTE-LPELPQSLKSLLVDNNNLKALSDL 96

Query: 275 IP 276
            P
Sbjct: 97  PP 98

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 38.7 bits (88), Expect = 0.001
 Identities = 19/86 (22%), Positives = 36/86 (41%), Gaps = 5/86 (5%)

Query: 304 MNCSQLQNLVLSHNTLSGIVPPEIGNLTHLRQLDLSHNFINGTIPSQLGYIPNISAVDLS 363
              S+L   +   N  S  +         L +L++S+N +   +P+     P +  +  S
Sbjct: 257 SGLSELPPNLYYLNASSNEIRSLCDLPPSLEELNVSNNKLI-ELPAL---PPRLERLIAS 312

Query: 364 KNNLSGVVPASVRIIPKLIVSENNLE 389
            N+L+  VP   + + +L V  N L 
Sbjct: 313 FNHLAE-VPELPQNLKQLHVEYNPLR 337

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Length = 227

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

 Score = 53.1 bits (126), Expect = 9e-09
 Identities = 38/226 (16%), Positives = 76/226 (33%), Gaps = 18/226 (7%)

Query: 65  SLRNLVELDLSNNILNGSIPLEFGNLKDLDALRLRGNKLDGLIPSSIGNLTNLTHLDLSL 124
           +L N +++    + +  ++     +L  +  L   G  +  +    +  L NL  L+L  
Sbjct: 17  ALANAIKIAAGKSNVTDTVTQA--DLDGITTLSAFGTGVTTI--EGVQYLNNLIGLELKD 72

Query: 125 NQLSGRLPQEVGNLKNLLSLFLDNNNLTGPIPSTLYHLNQLSNLYLAYNNLVGPLPKEVG 184
           NQ++   P +           L          + L +++ ++ L       +        
Sbjct: 73  NQITDLAPLK----------NLTKITELELSGNPLKNVSAIAGLQSIKTLDLTSTQITDV 122

Query: 185 NMKNLDSLLLNRNSLTGPIPSTIGYLNLGGKLDLSHNRLDSPIPPTIGNLTNLTSLDLSS 244
                 S L         I +      L     LS           + NL+ LT+L    
Sbjct: 123 TPLAGLSNLQVLYLDLNQITNISPLAGLTNLQYLSIGNAQVSDLTPLANLSKLTTLKADD 182

Query: 245 NQLSGLLPREVGNLKYLDSLSLDGNNLIGSIPPTIGYLTNLTSLNL 290
           N++S + P  + +L  L  + L  N +    P  +   +NL  + L
Sbjct: 183 NKISDISP--LASLPNLIEVHLKNNQISDVSP--LANTSNLFIVTL 224

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Length = 227

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

 Score = 52.0 bits (123), Expect = 2e-08
 Identities = 36/228 (15%), Positives = 74/228 (32%), Gaps = 18/228 (7%)

Query: 113 NLTNLTHLDLSLNQLSGRLPQEVGNLKNLLSLFLDNNNLTGPIPSTLYHLNQLSNLYLAY 172
            L N   +    + ++  + Q   +L  + +L      +T      + +LN L  L L  
Sbjct: 17  ALANAIKIAAGKSNVTDTVTQA--DLDGITTLSAFGTGVTTI--EGVQYLNNLIGLELKD 72

Query: 173 NNLVGPLPKEVGNMKNLDSLLLNRNSLTGPIPSTIGYLNLGGKLDLSHNRLDSPIPPTIG 232
           N +    P +           L + +      + +  ++    L        +    T  
Sbjct: 73  NQITDLAPLK----------NLTKITELELSGNPLKNVSAIAGLQSIKTLDLTSTQITDV 122

Query: 233 NLTNLTSLDLSSNQLSGLLPREVGNLKYLDSLSLDGNNLIGSIPPTIGYLTNLTSLNLGY 292
                 S           +          +   L   N   S    +  L+ LT+L    
Sbjct: 123 TPLAGLSNLQVLYLDLNQITNISPLAGLTNLQYLSIGNAQVSDLTPLANLSKLTTLKADD 182

Query: 293 NQLSSSIPPELMNCSQLQNLVLSHNTLSGIVPPEIGNLTHLRQLDLSH 340
           N++S   P  L +   L  + L +N +S + P  + N ++L  + L++
Sbjct: 183 NKISDISP--LASLPNLIEVHLKNNQISDVSP--LANTSNLFIVTLTN 226

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Length = 227

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

 Score = 50.4 bits (119), Expect = 8e-08
 Identities = 39/228 (17%), Positives = 70/228 (30%), Gaps = 18/228 (7%)

Query: 89  NLKDLDALRLRGNKLDGLIPSSIGNLTNLTHLDLSLNQLSGRLPQEVGNLKNLLSLFLDN 148
            L +   +    + +   +  +  +L  +T L      ++    + V  L NL+ L L +
Sbjct: 17  ALANAIKIAAGKSNVTDTVTQA--DLDGITTLSAFGTGVTT--IEGVQYLNNLIGLELKD 72

Query: 149 NNLTGPIPSTLYHLNQLSNLYLAYNNLVGPLPKEVGNMKNLDSLLLNRNSLTGPIPSTIG 208
           N +T   P           L       V  +           +     +       S + 
Sbjct: 73  NQITDLAPLKNLTKITELELSGNPLKNVSAIAGLQSIKTLDLTSTQITDVTPLAGLSNLQ 132

Query: 209 YLNLGGKLDLSHNRLDSPIPPTIGNLTNLTSLDLSSNQLSGLLPREVGNLKYLDSLSLDG 268
            L L      + + L         +                     + NL  L +L  D 
Sbjct: 133 VLYLDLNQITNISPLAGLTNLQYLS----------IGNAQVSDLTPLANLSKLTTLKADD 182

Query: 269 NNLIGSIPPTIGYLTNLTSLNLGYNQLSSSIPPELMNCSQLQNLVLSH 316
           N +    P  +  L NL  ++L  NQ+S   P  L N S L  + L++
Sbjct: 183 NKISDISP--LASLPNLIEVHLKNNQISDVSP--LANTSNLFIVTLTN 226

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Length = 227

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

 Score = 46.9 bits (110), Expect = 1e-06
 Identities = 41/227 (18%), Positives = 74/227 (32%), Gaps = 18/227 (7%)

Query: 137 NLKNLLSLFLDNNNLTGPIPSTLYHLNQLSNLYLAYNNLVGPLPKEVGNMKNLDSLLLNR 196
            L N + +    +N+T  +  T   L+ ++ L      +     + V  + NL  L L  
Sbjct: 17  ALANAIKIAAGKSNVTDTV--TQADLDGITTLSAFGTGVTTI--EGVQYLNNLIGLELKD 72

Query: 197 NSLTGPIPSTIGYLNLGGKLDLSHNRLDSPIPPTIGNLTNLTSLDLSSNQLSGLLPREVG 256
           N +T   P          +L  +  +  S I       T   +    ++         + 
Sbjct: 73  NQITDLAPLKNLTKITELELSGNPLKNVSAIAGLQSIKTLDLTSTQITDVTPLAGLSNLQ 132

Query: 257 NLKYLDSLSLDGNNLIGSIPPTIGYLTNLTSLNLGYNQLSSSIPPELMNCSQLQNLVLSH 316
            L    +   + + L G                        S    L N S+L  L    
Sbjct: 133 VLYLDLNQITNISPLAGLTNLQYLS----------IGNAQVSDLTPLANLSKLTTLKADD 182

Query: 317 NTLSGIVPPEIGNLTHLRQLDLSHNFINGTIPSQLGYIPNISAVDLS 363
           N +S I    + +L +L ++ L +N I+   P  L    N+  V L+
Sbjct: 183 NKISDI--SPLASLPNLIEVHLKNNQISDVSP--LANTSNLFIVTLT 225

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Length = 227

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

 Score = 40.0 bits (92), Expect = 2e-04
 Identities = 20/62 (32%), Positives = 29/62 (46%), Gaps = 4/62 (6%)

Query: 87  FGNLKDLDALRLRGNKLDGLIPSSIGNLTNLTHLDLSLNQLSGRLPQEVGNLKNLLSLFL 146
             NL  L  L+   NK+  + P  + +L NL  + L  NQ+S   P  + N  NL  + L
Sbjct: 169 LANLSKLTTLKADDNKISDISP--LASLPNLIEVHLKNNQISDVSP--LANTSNLFIVTL 224

Query: 147 DN 148
            N
Sbjct: 225 TN 226

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Length = 227

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

 Score = 38.5 bits (88), Expect = 7e-04
 Identities = 37/202 (18%), Positives = 63/202 (31%), Gaps = 20/202 (9%)

Query: 185 NMKNLDSLLLNRNSLTGPIPSTIGYLNLGGKLDLSHNRLDSPIPPTIGNLTNLTSLDLSS 244
            + N   +   ++++T  +  T   L+    L      + +     +  L NL  L+L  
Sbjct: 17  ALANAIKIAAGKSNVTDTV--TQADLDGITTLSAFGTGVTTI--EGVQYLNNLIGLELKD 72

Query: 245 NQLSGLLPREVGNLKYLDSLSLDGNNLIGSIPPTIGYLTNLTSLNLGY------------ 292
           NQ++ L P +         LS +    + +I       T   +                 
Sbjct: 73  NQITDLAPLKNLTKITELELSGNPLKNVSAIAGLQSIKTLDLTSTQITDVTPLAGLSNLQ 132

Query: 293 --NQLSSSIPPELMNCSQLQNLVLSHNTLSGIVPPEIGNLTHLRQLDLSHNFINGTIPSQ 350
                 + I              LS           + NL+ L  L    N I+   P  
Sbjct: 133 VLYLDLNQITNISPLAGLTNLQYLSIGNAQVSDLTPLANLSKLTTLKADDNKISDISP-- 190

Query: 351 LGYIPNISAVDLSKNNLSGVVP 372
           L  +PN+  V L  N +S V P
Sbjct: 191 LASLPNLIEVHLKNNQISDVSP 212

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Length = 227

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

 Score = 37.3 bits (85), Expect = 0.002
 Identities = 34/205 (16%), Positives = 65/205 (31%), Gaps = 17/205 (8%)

Query: 42  LSKLEELALPYNSLTGTIPAEIGSLRNLVELDLSNNILNGSIPLEFGNLKDLDALRLRGN 101
           L  +  L+     +T      +  L NL+ L+L +N +    PL+         L     
Sbjct: 40  LDGITTLSAFGTGVTTI--EGVQYLNNLIGLELKDNQITDLAPLKNLTKITELELSGNPL 97

Query: 102 KLDGLIPSSIGNLTNLTHLDLSLNQLSGRLPQEVGNLKNLLSLFLDNNNLTGPIPSTLYH 161
           K    I       T         +         +  L   L+   + + L G        
Sbjct: 98  KNVSAIAGLQSIKTLDLTSTQITDVTPLAGLSNLQVLYLDLNQITNISPLAGLTNLQYLS 157

Query: 162 LNQLSNLYLAYNNLVGPLPKEVGNMKNLDSLLLNRNSLTGPIPSTIGYLNLGGKLDLSHN 221
           +                    + N+  L +L  + N ++   P  +  L    ++ L +N
Sbjct: 158 IGNAQVSD----------LTPLANLSKLTTLKADDNKISDISP--LASLPNLIEVHLKNN 205

Query: 222 RLDSPIPPTIGNLTNLTSLDLSSNQ 246
           ++    P  + N +NL  + L +NQ
Sbjct: 206 QISDVSP--LANTSNLFIVTL-TNQ 227

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 242

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 49.5 bits (116), Expect = 2e-07
 Identities = 39/229 (17%), Positives = 70/229 (30%), Gaps = 10/229 (4%)

Query: 53  NSLTGTIPAEIGSLRNLVELDLSNNILNGSIPLEFGNLKDLDALRLRGNKLDGLIPSSIG 112
           + +T  IP+++   RN +EL      L       F    DL+ + +  N +  +I + + 
Sbjct: 18  SKVT-EIPSDL--PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVF 74

Query: 113 NLTNLTHLDLSLNQLSGRLPQEVGNLKNLLSLFLDNNNLT----GPIPSTLYHLNQLSNL 168
           +     H        +                +L  +N        +         L ++
Sbjct: 75  SNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDI 134

Query: 169 YLAYNNLVGPLPKEVGNMKNLDSLLLNRNSLTGPIPSTIGYLNLGGKLDLSHNRLDSPIP 228
               N         VG       L LN+N +            L       +N L+    
Sbjct: 135 QDNINIHTIERNSFVGLSFESVILWLNKNGIQEIHNCAFNGTQLDELNLSDNNNLEELPN 194

Query: 229 PTIGNLTNLTSLDLSSNQLSGLLPREVGNLKYLDSLSLDGNNLIGSIPP 277
                 +    LD+S  ++  L    + NLK L + S    NL   +P 
Sbjct: 195 DVFHGASGPVILDISRTRIHSLPSYGLENLKKLRARST--YNL-KKLPT 240

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 242

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.5 bits (103), Expect = 1e-05
 Identities = 35/216 (16%), Positives = 68/216 (31%), Gaps = 6/216 (2%)

Query: 107 IPSSIGNLTNLTHLDLSLNQLSGRLPQEVGNLKNLLSLFLDNNNLTGPIPSTLYHLNQLS 166
           IPS +    N   L   L +L            +L  + +  N++   I + ++      
Sbjct: 23  IPSDL--PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKL 80

Query: 167 NLYLAY--NNLVGPLPKEVGNMKNLDSLLLNRNSLTGPIPSTIGYLNLGGKLDLSH--NR 222
           +       NNL+   P+   N+ NL  LL++   +         +      LD+    N 
Sbjct: 81  HEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINI 140

Query: 223 LDSPIPPTIGNLTNLTSLDLSSNQLSGLLPREVGNLKYLDSLSLDGNNLIGSIPPTIGYL 282
                   +G       L L+ N +  +        +  +    D NNL           
Sbjct: 141 HTIERNSFVGLSFESVILWLNKNGIQEIHNCAFNGTQLDELNLSDNNNLEELPNDVFHGA 200

Query: 283 TNLTSLNLGYNQLSSSIPPELMNCSQLQNLVLSHNT 318
           +    L++   ++ S     L N  +L+     +  
Sbjct: 201 SGPVILDISRTRIHSLPSYGLENLKKLRARSTYNLK 236

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 242

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.7 bits (101), Expect = 2e-05
 Identities = 30/238 (12%), Positives = 60/238 (25%), Gaps = 10/238 (4%)

Query: 116 NLTHLDLSLNQLSGRLPQEVGNLKNLLSLFLDNNNLTGPIPSTLYHL--NQLSNLYLAYN 173
           +        ++++  +P ++   +N + L      L              +   +     
Sbjct: 9   SNRVFLCQESKVT-EIPSDL--PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDV 65

Query: 174 NLVGPLPKEVGNMKNLDSLLLNRNSLTGPIPSTIGYLNLGGKLDLSHNRLDSPIPPTIGN 233
             V          K  +  +   N+L    P     L     L +S+  +         +
Sbjct: 66  LEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIH 125

Query: 234 LTNLTSLDLSS--NQLSGLLPREVGNLKYLDSLSLDGNNLIGSIPPTIGYLTNLTSLNLG 291
                 LD+    N  +      VG       L L+ N +                    
Sbjct: 126 SLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIHNCAFNGTQLDELNLSD 185

Query: 292 YNQLSSSIPPELMNCSQLQNLVLSHNTLSGIVPPEIGNLTHLRQLDLSHNFINGTIPS 349
            N L           S    L +S   +  +    + NL  LR     +      +P+
Sbjct: 186 NNNLEELPNDVFHGASGPVILDISRTRIHSLPSYGLENLKKLRARSTYN---LKKLPT 240

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 242

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.5 bits (90), Expect = 4e-04
 Identities = 32/235 (13%), Positives = 62/235 (26%), Gaps = 10/235 (4%)

Query: 71  ELDLSNNILNGSIPLEFGNLKDLDALRLRGNKLDGLIPSSIGNLTNLTHLDLSLNQLSGR 130
                 + +   IP +    ++   LR    KL  +   +     +L  +++S N +   
Sbjct: 12  VFLCQESKVT-EIPSDL--PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEV 68

Query: 131 LPQEVGNLKNLLSLFLDN--NNLTGPIPSTLYHLNQLSNLYLAYNNLVGPLPKEVGNMKN 188
           +  +V +    L        NNL    P    +L  L  L ++   +         +   
Sbjct: 69  IEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQ 128

Query: 189 LDSLLLNRNSLTGPIPSTIGYLNLGG--KLDLSHNRLDSPIPPTIGNLTNLTSLDLSSNQ 246
              L +  N     I              L L+ N +                    +N 
Sbjct: 129 KVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIHNCAFNGTQLDELNLSDNNN 188

Query: 247 LSGLLPREVGNLKYLDSLSLDGNNLIGSIPPTIGYLTNLTSLNLGYNQLSSSIPP 301
           L  L             L +    +       +  L  L + +     L   +P 
Sbjct: 189 LEELPNDVFHGASGPVILDISRTRIHSLPSYGLENLKKLRARST--YNL-KKLPT 240

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 242

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.6 bits (85), Expect = 0.002
 Identities = 13/81 (16%), Positives = 23/81 (28%), Gaps = 2/81 (2%)

Query: 288 LNLGYNQLSSSIPPELMNCSQLQNLVLSHNTLSGIVPPEIGNLTHLRQLDLSHNFINGTI 347
           L L  N +              +  +  +N L  +        +    LD+S   I+   
Sbjct: 158 LWLNKNGIQEIHNCAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLP 217

Query: 348 PSQLGYIPNISAVDLSKNNLS 368
              L  +  + A      NL 
Sbjct: 218 SYGLENLKKLRARST--YNLK 236

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]} Length = 162

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 47.2 bits (111), Expect = 5e-07
 Identities = 24/128 (18%), Positives = 42/128 (32%), Gaps = 7/128 (5%)

Query: 216 LDLSHNRLDSPIPPTIGNLTNLTSLDLSSNQLSGLLPREVGNLKYLDSLSLDGNNLIGSI 275
           LDL   ++   I      L    ++D S N++  L       L+ L +L ++ N +    
Sbjct: 23  LDLRGYKIPV-IENLGATLDQFDAIDFSDNEIRKLDGFP--LLRRLKTLLVNNNRICRIG 79

Query: 276 PPTIGYLTNLTSLNLGYNQLSSSIPPELMNCSQLQNLVLSHNT----LSGIVPPEIGNLT 331
                 L +LT L L  N L      + +   +    +                 I  + 
Sbjct: 80  EGLDQALPDLTELILTNNSLVELGDLDPLASLKSLTYLCILRNPVTNKKHYRLYVIYKVP 139

Query: 332 HLRQLDLS 339
            +R LD  
Sbjct: 140 QVRVLDFQ 147

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]} Length = 162

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.0 bits (100), Expect = 1e-05
 Identities = 22/140 (15%), Positives = 44/140 (31%), Gaps = 7/140 (5%)

Query: 229 PTIGNLTNLTSLDLSSNQLSGLLPREVGNLKYLDSLSLDGNNLIGSIPPTIGYLTNLTSL 288
               N      LDL   ++   +      L   D++    N +          L  L +L
Sbjct: 12  AQYTNAVRDRELDLRGYKIPV-IENLGATLDQFDAIDFSDNEIR--KLDGFPLLRRLKTL 68

Query: 289 NLGYNQLSSSIPPELMNCSQLQNLVLSHNTLSGI-VPPEIGNLTHLRQLDLSH---NFIN 344
            +  N++             L  L+L++N+L  +     + +L  L  L +         
Sbjct: 69  LVNNNRICRIGEGLDQALPDLTELILTNNSLVELGDLDPLASLKSLTYLCILRNPVTNKK 128

Query: 345 GTIPSQLGYIPNISAVDLSK 364
                 +  +P +  +D  K
Sbjct: 129 HYRLYVIYKVPQVRVLDFQK 148

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]} Length = 162

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.2 bits (98), Expect = 2e-05
 Identities = 24/102 (23%), Positives = 42/102 (41%), Gaps = 5/102 (4%)

Query: 74  LSNNILNGSIPLEFGNLKDLDALRLRGNKLDGLIPSSIGNLTNLTHLDLSLNQLSGRLPQ 133
           L+  ++  +   ++ N      L LRG K+   I +    L     +D S N++  R   
Sbjct: 3   LTAELIEQA--AQYTNAVRDRELDLRGYKIPV-IENLGATLDQFDAIDFSDNEI--RKLD 57

Query: 134 EVGNLKNLLSLFLDNNNLTGPIPSTLYHLNQLSNLYLAYNNL 175
               L+ L +L ++NN +          L  L+ L L  N+L
Sbjct: 58  GFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELILTNNSL 99

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]} Length = 162

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.3 bits (93), Expect = 9e-05
 Identities = 28/128 (21%), Positives = 50/128 (39%), Gaps = 4/128 (3%)

Query: 42  LSKLEELALPYNSLTGTIPAEIGSLRNLVELDLSNNILNGSIPLEFGNLKDLDALRLRGN 101
             +  EL L    +   I     +L     +D S+N +       F  L+ L  L +  N
Sbjct: 17  AVRDRELDLRGYKIP-VIENLGATLDQFDAIDFSDNEIRKLDG--FPLLRRLKTLLVNNN 73

Query: 102 KLDGLIPSSIGNLTNLTHLDLSLNQLSG-RLPQEVGNLKNLLSLFLDNNNLTGPIPSTLY 160
           ++  +       L +LT L L+ N L        + +LK+L  L +  N +T      LY
Sbjct: 74  RICRIGEGLDQALPDLTELILTNNSLVELGDLDPLASLKSLTYLCILRNPVTNKKHYRLY 133

Query: 161 HLNQLSNL 168
            + ++  +
Sbjct: 134 VIYKVPQV 141

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]} Length = 199

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

 Score = 47.4 bits (111), Expect = 7e-07
 Identities = 38/199 (19%), Positives = 69/199 (34%), Gaps = 16/199 (8%)

Query: 66  LRNLVELDLSNNILNGSIPLEFGNLKDLDALRLRGNKLDGLIPSSIGNLTNLTHLDLSLN 125
           L   ++  L    +  ++     +L  +  L+     +  +    +  L NLT ++ S N
Sbjct: 17  LAEKMKTVLGKTNVTDTVSQT--DLDQVTTLQADRLGIKSI--DGVEYLNNLTQINFSNN 72

Query: 126 QLSGRLPQEVGNLKNLLSLFLDNNNLTGPIPSTLYHLNQLSNLYLAYNNLVGPLPKEVGN 185
           QL+            L +L    + L                           +      
Sbjct: 73  QLTDI--------TPLKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITDIDPL 124

Query: 186 MKNLDSLLLNRNSLTGPIPSTIGYLNLGGKLDLSHNRLDSPIPPTIGNLTNLTSLDLSSN 245
               +   L  +S T    S +  L    +L+ S N++    P  + NLT L  LD+SSN
Sbjct: 125 KNLTNLNRLELSSNTISDISALSGLTSLQQLNFSSNQVTDLKP--LANLTTLERLDISSN 182

Query: 246 QLSGLLPREVGNLKYLDSL 264
           ++S +    +  L  L+SL
Sbjct: 183 KVSDI--SVLAKLTNLESL 199

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]} Length = 199

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

 Score = 40.0 bits (92), Expect = 2e-04
 Identities = 33/191 (17%), Positives = 63/191 (32%), Gaps = 22/191 (11%)

Query: 137 NLKNLLSLFLDNNNLTGPIPSTLYHLNQLSNLYLAYNNLVGPLPKEVGNMKNLDSLLLNR 196
            L   +   L   N+T  +  +   L+Q++ L      +       V  + NL  +  + 
Sbjct: 16  ALAEKMKTVLGKTNVTDTV--SQTDLDQVTTLQADRLGIKS--IDGVEYLNNLTQINFSN 71

Query: 197 NSLTGPI---------------PSTIGYLNLGGKLDLSHNRLDSPIPPTIGNLTNLTSLD 241
           N LT                          L    +L+   L +     I  L NLT+L+
Sbjct: 72  NQLTDITPLKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITDIDPLKNLTNLN 131

Query: 242 LSSNQLSGLLPREVGNLKYLDSLSLDGNNLIGSIPPTIGYLTNLTSLNLGYNQLSSSIPP 301
                 + +      +           +N +  + P +  LT L  L++  N++S     
Sbjct: 132 RLELSSNTISDISALSGLTSLQQLNFSSNQVTDLKP-LANLTTLERLDISSNKVSD--IS 188

Query: 302 ELMNCSQLQNL 312
            L   + L++L
Sbjct: 189 VLAKLTNLESL 199

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 45.1 bits (106), Expect = 1e-06
 Identities = 25/108 (23%), Positives = 44/108 (40%), Gaps = 6/108 (5%)

Query: 144 LFLDNNNLTGPIPSTLYHLNQLSNLYLAYNNLVGPLPKEVGNMKNLDSLLLNRNSLTGPI 203
           L L + +LT  +   L  L  +++L L++N L    P  +  ++ L+ L  + N      
Sbjct: 3   LHLAHKDLT--VLCHLEQLLLVTHLDLSHNRLRALPP-ALAALRCLEVLQASDN--ALEN 57

Query: 204 PSTIGYLNLGGKLDLSHNRLDS-PIPPTIGNLTNLTSLDLSSNQLSGL 250
              +  L    +L L +NRL        + +   L  L+L  N L   
Sbjct: 58  VDGVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQE 105

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 41.6 bits (97), Expect = 2e-05
 Identities = 29/122 (23%), Positives = 46/122 (37%), Gaps = 6/122 (4%)

Query: 48  LALPYNSLTGTIPAEIGSLRNLVELDLSNNILNGSIPLEFGNLKDLDALRLRGNKLDGLI 107
           L L +  LT  +   +  L  +  LDLS+N L    P     L+ L+   L+ +      
Sbjct: 3   LHLAHKDLT--VLCHLEQLLLVTHLDLSHNRLRALPP-ALAALRCLE--VLQASDNALEN 57

Query: 108 PSSIGNLTNLTHLDLSLNQL-SGRLPQEVGNLKNLLSLFLDNNNLTGPIPSTLYHLNQLS 166
              + NL  L  L L  N+L      Q + +   L+ L L  N+L             L 
Sbjct: 58  VDGVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLP 117

Query: 167 NL 168
           ++
Sbjct: 118 SV 119

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 41.6 bits (97), Expect = 2e-05
 Identities = 29/107 (27%), Positives = 42/107 (39%), Gaps = 6/107 (5%)

Query: 96  LRLRGNKLDGLIPSSIGNLTNLTHLDLSLNQLSGRLPQEVGNLKNLLSLFLDNNNLTGPI 155
           L L    L  L    +  L  +THLDLS N+L    P  +  L+ L    L  ++     
Sbjct: 3   LHLAHKDLTVL--CHLEQLLLVTHLDLSHNRLRALPP-ALAALRCL--EVLQASDNALEN 57

Query: 156 PSTLYHLNQLSNLYLAYNNLVG-PLPKEVGNMKNLDSLLLNRNSLTG 201
              + +L +L  L L  N L      + + +   L  L L  NSL  
Sbjct: 58  VDGVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQ 104

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 41.2 bits (96), Expect = 3e-05
 Identities = 28/108 (25%), Positives = 50/108 (46%), Gaps = 6/108 (5%)

Query: 264 LSLDGNNLIGSIPPTIGYLTNLTSLNLGYNQLSSSIPPELMNCSQLQNLVLSHNTLSGIV 323
           L L   +L  ++   +  L  +T L+L +N+L  ++PP L     L+ L  S N L  + 
Sbjct: 3   LHLAHKDL--TVLCHLEQLLLVTHLDLSHNRL-RALPPALAALRCLEVLQASDNALENV- 58

Query: 324 PPEIGNLTHLRQLDLSHNFINGT-IPSQLGYIPNISAVDLSKNNLSGV 370
              + NL  L++L L +N +  +     L   P +  ++L  N+L   
Sbjct: 59  -DGVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQE 105

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 36.6 bits (84), Expect = 0.001
 Identities = 27/125 (21%), Positives = 48/125 (38%), Gaps = 9/125 (7%)

Query: 168 LYLAYNNLVGPLPKEVGNMKNLDSLLLNRNSLTGPIPSTIGYLNLGGKLDLSHNRLDSPI 227
           L+LA+ +L       +  +  +  L L+ N L    P+      L     L  +      
Sbjct: 3   LHLAHKDLTVL--CHLEQLLLVTHLDLSHNRLRALPPALAALRCLE---VLQASDNALEN 57

Query: 228 PPTIGNLTNLTSLDLSSNQLSGL-LPREVGNLKYLDSLSLDGNNLI---GSIPPTIGYLT 283
              + NL  L  L L +N+L      + + +   L  L+L GN+L    G        L 
Sbjct: 58  VDGVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLP 117

Query: 284 NLTSL 288
           +++S+
Sbjct: 118 SVSSI 122

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]} Length = 162

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.6 bits (107), Expect = 2e-06
 Identities = 26/143 (18%), Positives = 51/143 (35%), Gaps = 6/143 (4%)

Query: 217 DLSHNRLDSPIPPTIGNLTNLTSLDLSSNQLSGLLPREVGNLKYLDSLSLDGNNLIGSIP 276
           +L   +++  +   +    + +   L    L      ++        L+   +++  ++ 
Sbjct: 3   ELKPEQVEQ-LKLIMSKRYDGSQQALDLKGLR--SDPDLVAQNIDVVLNR-RSSMAATLR 58

Query: 277 PTIGYLTNLTSLNLGYNQLS--SSIPPELMNCSQLQNLVLSHNTLSGIVPPEIGNLTHLR 334
                +  L SLNL  N+L     +   +     L+ L LS N L      +      L 
Sbjct: 59  IIEENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLKLE 118

Query: 335 QLDLSHNFINGTIPSQLGYIPNI 357
           +L L  N ++ T   Q  YI  I
Sbjct: 119 ELWLDGNSLSDTFRDQSTYISAI 141

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]} Length = 162

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.7 bits (102), Expect = 7e-06
 Identities = 27/151 (17%), Positives = 52/151 (34%), Gaps = 6/151 (3%)

Query: 241 DLSSNQLSGLLPREVGNLKYLDSLSLDGNNLIGSIPPTIGYLTNLTSLNLGYNQLSSSIP 300
           +L   Q+   L   +         +LD   L     P +        LN   + +++++ 
Sbjct: 3   ELKPEQVE-QLKLIMSKRYDGSQQALDLKGL--RSDPDLVAQNIDVVLNRR-SSMAATLR 58

Query: 301 PELMNCSQLQNLVLSHNTLSGI--VPPEIGNLTHLRQLDLSHNFINGTIPSQLGYIPNIS 358
               N  +L +L LS+N L  +  +   +    +L+ L+LS N +             + 
Sbjct: 59  IIEENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLKLE 118

Query: 359 AVDLSKNNLSGVVPASVRIIPKLIVSENNLE 389
            + L  N+LS         I  +      L 
Sbjct: 119 ELWLDGNSLSDTFRDQSTYISAIRERFPKLL 149

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]} Length = 162

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.4 bits (91), Expect = 2e-04
 Identities = 28/123 (22%), Positives = 50/123 (40%), Gaps = 7/123 (5%)

Query: 216 LDLSHNRLDSPIPPTIGNLTNLTSLDLSSNQLSGL--LPREVGNLKYLDSLSLDGNNLIG 273
           LDL   R D    P +        L+  S+  + L  +   +  L  L+ LS +    + 
Sbjct: 27  LDLKGLRSD----PDLVAQNIDVVLNRRSSMAATLRIIEENIPELLSLN-LSNNRLYRLD 81

Query: 274 SIPPTIGYLTNLTSLNLGYNQLSSSIPPELMNCSQLQNLVLSHNTLSGIVPPEIGNLTHL 333
            +   +    NL  LNL  N+L S    + +   +L+ L L  N+LS     +   ++ +
Sbjct: 82  DMSSIVQKAPNLKILNLSGNELKSERELDKIKGLKLEELWLDGNSLSDTFRDQSTYISAI 141

Query: 334 RQL 336
           R+ 
Sbjct: 142 RER 144

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]} Length = 162

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.0 bits (90), Expect = 3e-04
 Identities = 28/142 (19%), Positives = 47/142 (33%), Gaps = 5/142 (3%)

Query: 73  DLSNNILNGSIPLEFGNLKDLDALRL--RGNKLDGLIPSSIGNLTNLTHLDLSLNQLSGR 130
           D S   L+        +L   +   +  R + +   +     N+  L  L+LS N+L   
Sbjct: 21  DGSQQALDLKGLRSDPDLVAQNIDVVLNRRSSMAATLRIIEENIPELLSLNLSNNRLYRL 80

Query: 131 --LPQEVGNLKNLLSLFLDNNNLTGPIPSTLYHLNQLSNLYLAYNNLVGPLPKEVGNMKN 188
             +   V    NL  L L  N L            +L  L+L  N+L      +   +  
Sbjct: 81  DDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLKLEELWLDGNSLSDTFRDQSTYISA 140

Query: 189 LDSLLLNRNSLTG-PIPSTIGY 209
           +         L G  +P  I +
Sbjct: 141 IRERFPKLLRLDGHELPPPIAF 162

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]} Length = 162

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.3 bits (88), Expect = 5e-04
 Identities = 26/134 (19%), Positives = 56/134 (41%), Gaps = 5/134 (3%)

Query: 34  RIPSEIGALSKLEELALPYNSLTGTIPAEIGSLRNLVELDLSNNILNGSIPLEFGNLKDL 93
           ++   +       + AL    L      ++ +    V L+  +++   ++ +   N+ +L
Sbjct: 11  QLKLIMSKRYDGSQQALDLKGLR--SDPDLVAQNIDVVLNRRSSMAA-TLRIIEENIPEL 67

Query: 94  DALRLRGNKLDGL--IPSSIGNLTNLTHLDLSLNQLSGRLPQEVGNLKNLLSLFLDNNNL 151
            +L L  N+L  L  + S +    NL  L+LS N+L      +      L  L+LD N+L
Sbjct: 68  LSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLKLEELWLDGNSL 127

Query: 152 TGPIPSTLYHLNQL 165
           +        +++ +
Sbjct: 128 SDTFRDQSTYISAI 141

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]} Length = 162

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.3 bits (83), Expect = 0.003
 Identities = 32/168 (19%), Positives = 53/168 (31%), Gaps = 26/168 (15%)

Query: 121 DLSLNQLSGRLPQEVGNLKNLLSLFLDNNNLTGPIPSTLYHLNQLSNLYLAYNNLVGPLP 180
           +L   Q+  +L   +    +     LD   L       L   N    L    +++   L 
Sbjct: 3   ELKPEQVE-QLKLIMSKRYDGSQQALDLKGL--RSDPDLVAQNIDVVLNRR-SSMAATLR 58

Query: 181 KEVGNMKNLDSLLLNRNSLTGPIPSTIGYLNLGGKLDLSHNRLDSPIPPTIGNLTNLTSL 240
               N+  L SL L+ N L                           +   +    NL  L
Sbjct: 59  IIEENIPELLSLNLSNNRLYRL----------------------DDMSSIVQKAPNLKIL 96

Query: 241 DLSSNQLSGLLPREVGNLKYLDSLSLDGNNLIGSIPPTIGYLTNLTSL 288
           +LS N+L      +      L+ L LDGN+L  +      Y++ +   
Sbjct: 97  NLSGNELKSERELDKIKGLKLEELWLDGNSLSDTFRDQSTYISAIRER 144

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 156

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.4 bits (103), Expect = 3e-06
 Identities = 23/153 (15%), Positives = 49/153 (32%), Gaps = 4/153 (2%)

Query: 229 PTIGNLTNLTSLDLSSNQLSGLLPREVGNLKYLDSLSLDGNNLIGSIPP-TIGYLTNLTS 287
           P        + L  + +         +   + L  L ++    +  +    +  L  L +
Sbjct: 2   PDACCPHGSSGLRCTRDGALDS-LHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRN 60

Query: 288 LNLGYNQLSSSIPPELMNCSQLQNLVLSHNTLSGIVPPEIGNLTHLRQLDLSHNFINGTI 347
           L +  + L    P       +L  L LS N L  +   +      L++L LS N ++ + 
Sbjct: 61  LTIVKSGLRFVAPDAFHFTPRLSRLNLSFNALESL-SWKTVQGLSLQELVLSGNPLHCSC 119

Query: 348 PSQ-LGYIPNISAVDLSKNNLSGVVPASVRIIP 379
             + L          + +  L       +  +P
Sbjct: 120 ALRWLQRWEEEGLGGVPEQKLQCHGQGPLAHMP 152

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 156

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.5 bits (93), Expect = 8e-05
 Identities = 32/145 (22%), Positives = 54/145 (37%), Gaps = 4/145 (2%)

Query: 216 LDLSHNRLDSPIPPTIGNLTNLTSLDLSSNQ-LSGLLPREVGNLKYLDSLSLDGNNLIGS 274
           L  + +         +    NLT L + + Q L  L  R++  L  L +L++  + L   
Sbjct: 13  LRCTRDGALD-SLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFV 71

Query: 275 IPPTIGYLTNLTSLNLGYNQLSSSIPPELMNCSQLQNLVLSHNTLS-GIVPPEIGNLTHL 333
            P    +   L+ LNL +N    S+  + +    LQ LVLS N L        +      
Sbjct: 72  APDAFHFTPRLSRLNLSFNA-LESLSWKTVQGLSLQELVLSGNPLHCSCALRWLQRWEEE 130

Query: 334 RQLDLSHNFINGTIPSQLGYIPNIS 358
               +    +       L ++PN S
Sbjct: 131 GLGGVPEQKLQCHGQGPLAHMPNAS 155

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 192

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score = 44.4 bits (103), Expect = 6e-06
 Identities = 40/178 (22%), Positives = 66/178 (37%), Gaps = 8/178 (4%)

Query: 143 SLFLDNNNLTGPIPSTLYHLNQLSNLYLAYNNLVGPLPKEV-GNMKNLDSLLLNRNSLTG 201
           ++      L   IP  +      + L L  N L       + G + +L  L L RN LTG
Sbjct: 12  TVDCTGRGLKE-IPRDIP--LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTG 68

Query: 202 PIPSTIGYLNLGGKLDLSHNRLDSPIPPTIGNLTNLTSLDLSSNQLSGLLPREVGNLKYL 261
             P+     +   +L L  N++          L  L +L+L  NQ+S ++P    +L  L
Sbjct: 69  IEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSL 128

Query: 262 DSLSLDGNNLIGSIPPTIGYLTNLTSLNLGYNQLSSSIPPELMNCSQLQNLVLSHNTL 319
            SL+L  N           +   L   +L         P ++ +   +Q   L H+  
Sbjct: 129 TSLNLASNPFNC-NCHLAWFAEWLRKKSLNGGAARCGAPSKVRD---VQIKDLPHSEF 182

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 192

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score = 40.2 bits (92), Expect = 2e-04
 Identities = 29/158 (18%), Positives = 58/158 (36%), Gaps = 4/158 (2%)

Query: 1   MDNNGNAAELSQLNFTCFPNLESIIIPYTLLSGRIPSEIGALSKLEELALPYNSLTGTIP 60
           +++N      S   F   P+L  + +    L+G  P+     S ++EL L  N +     
Sbjct: 36  LNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISN 95

Query: 61  AEIGSLRNLVELDLSNNILNGSIPLEFGNLKDLDALRLRGNKLDGLIPSSIGNLTNLTHL 120
                L  L  L+L +N ++  +P  F +L  L +L L  N  +            L   
Sbjct: 96  KMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCNCH-LAWFAEWLRKK 154

Query: 121 DLSLNQLSGRLPQEVGNLKNLLSLFLDNNNLTGPIPST 158
            L+        P +   ++++    L ++       ++
Sbjct: 155 SLNGGAARCGAPSK---VRDVQIKDLPHSEFKCSSENS 189

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 192

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score = 39.8 bits (91), Expect = 2e-04
 Identities = 44/175 (25%), Positives = 67/175 (38%), Gaps = 7/175 (4%)

Query: 35  IPSEIGALSKLEELALPYNSLTGTIPAEI-GSLRNLVELDLSNNILNGSIPLEFGNLKDL 93
           IP +I       EL L  N L       + G L +LV+L+L  N L G  P  F     +
Sbjct: 23  IPRDIP--LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHI 80

Query: 94  DALRLRGNKLDGLIPSSIGNLTNLTHLDLSLNQLSGRLPQEVGNLKNLLSLFLDNNNLTG 153
             L+L  NK+  +       L  L  L+L  NQ+S  +P    +L +L SL L +N    
Sbjct: 81  QELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNC 140

Query: 154 PIPSTLYHLNQLSNLYLAYNNLVGPLPKEVGNMKNLDSLLLNRNSLTGPIPSTIG 208
                 +    L    L         P +V +++  D   L  +       ++ G
Sbjct: 141 -NCHLAWFAEWLRKKSLNGGAARCGAPSKVRDVQIKD---LPHSEFKCSSENSEG 191

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 192

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score = 37.1 bits (84), Expect = 0.001
 Identities = 38/184 (20%), Positives = 67/184 (36%), Gaps = 29/184 (15%)

Query: 238 TSLDLSSNQLSGLLPREVGNLKYLDSLSLDGNNLIGSIPPTI-GYLTNLTSLNLGYNQLS 296
           T++D +   L  + PR++    +   L L+ N L       + G L +L  L L  NQL+
Sbjct: 11  TTVDCTGRGLKEI-PRDIPL--HTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLT 67

Query: 297 SSIPPELMNCSQLQNLVLSHNTLSGIVPPEIGNLTHLRQLDLSHNFINGTIPSQLGYIPN 356
              P      S +Q L L  N +  I       L  L+ L+L  N I+  +P    ++ +
Sbjct: 68  GIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNS 127

Query: 357 ISAV-----------------------DLSKNNLSGVVPASVRIIPKLIVSENNL--ELE 391
           ++++                        L+        P+ VR +    +  +      E
Sbjct: 128 LTSLNLASNPFNCNCHLAWFAEWLRKKSLNGGAARCGAPSKVRDVQIKDLPHSEFKCSSE 187

Query: 392 NSTS 395
           NS  
Sbjct: 188 NSEG 191

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Length = 344

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

 Score = 43.3 bits (100), Expect = 3e-05
 Identities = 48/333 (14%), Positives = 95/333 (28%), Gaps = 33/333 (9%)

Query: 91  KDLDALRLRGNKLDGLIPSSIGNLTNLTHLDLSLNQLSGR----LPQEVGNLKNLLSLFL 146
           K L    +        + + +    ++  + LS N +       L + + + K+L     
Sbjct: 8   KSLKLDAITTEDEKS-VFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEF 66

Query: 147 DNNNLTGPIPSTLYHLNQLSNLYLAYNNLV---GPLPKEVGNMKNLDSLLLNRNSLTGPI 203
            +             L  L    L    L              +      L++++    +
Sbjct: 67  SDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHL 126

Query: 204 PSTIGYLNLGGKLDLSHNRLDSPIPPTIGNLTNLTSLDLSSNQLSGLLPREVGNLKYLDS 263
                 L       ++    +  +     N   L S+    N+L     +E         
Sbjct: 127 YLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHR 186

Query: 264 LSLDGNNLIGSIPPTIGYLTNLTSL-------------NLGYNQLSSSIPPELMNCSQLQ 310
           L      +   I P       L  L             N   +  SS++   L +   L+
Sbjct: 187 LLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLR 246

Query: 311 NLVLSHNTLSGIVPPEIGN------LTHLRQLDLSHNFINGTIPSQL-----GYIPNISA 359
            L L+   LS      + +         L+ L L +N I       L       +P++  
Sbjct: 247 ELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLF 306

Query: 360 VDLSKNNLSGVVPASVRIIPKLIVSENNLELEN 392
           ++L+ N  S      V  I ++  +    EL+ 
Sbjct: 307 LELNGNRFSE-EDDVVDEIREVFSTRGRGELDE 338

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Length = 344

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

 Score = 41.4 bits (95), Expect = 1e-04
 Identities = 47/321 (14%), Positives = 99/321 (30%), Gaps = 33/321 (10%)

Query: 45  LEELALPYNSLTG----TIPAEIGSLRNLVELDLSNNILNG----SIPLEFGNLKDLDAL 96
           +E  +L  +++T     ++ A +    ++ E+ LS N +       +     + KDL+  
Sbjct: 5   IEGKSLKLDAITTEDEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIA 64

Query: 97  RLRGN---KLDGLIPSSIGNLTNLTHLDLSLNQLSGRLPQEVGNLKNLLSLFLDNNNLTG 153
                   ++   IP ++  L         L+ +           +  L  FL  +    
Sbjct: 65  EFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLE 124

Query: 154 PIPSTLYHLNQLSNLYLAYNNLVGPLPKEVGNMKNLDSLLLNRNSLTGPIPSTIGYLNLG 213
            +      L   +   +A       + K+  N   L S++  RN            L  G
Sbjct: 125 HLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRN-----------RLENG 173

Query: 214 GKLDLSHNRLDSPIPPTIGNLTNLTSLDLSSNQLSGLLPREVGNLKYLDSLSLDGNNLIG 273
              + +       +  T+  + N    +   + L   L             +   +    
Sbjct: 174 SMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSS 233

Query: 274 SIPPTIGYLTNLTSLNLGYNQLSSSIPPELMNC------SQLQNLVLSHNTLSGIVPPEI 327
           ++   +    NL  L L    LS+     +++         LQ L L +N +       +
Sbjct: 234 ALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTL 293

Query: 328 -----GNLTHLRQLDLSHNFI 343
                  +  L  L+L+ N  
Sbjct: 294 KTVIDEKMPDLLFLELNGNRF 314

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Length = 344

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

 Score = 38.7 bits (88), Expect = 8e-04
 Identities = 14/92 (15%), Positives = 31/92 (33%), Gaps = 8/92 (8%)

Query: 284 NLTSLNLGYNQLS----SSIPPELMNCSQLQNLVLSHNTLSG----IVPPEIGNLTHLRQ 335
           ++   +L  + ++     S+   L+    ++ +VLS NT+       +   I +   L  
Sbjct: 4   SIEGKSLKLDAITTEDEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEI 63

Query: 336 LDLSHNFINGTIPSQLGYIPNISAVDLSKNNL 367
            + S  F           +  +    L    L
Sbjct: 64  AEFSDIFTGRVKDEIPEALRLLLQALLKCPKL 95

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Length = 344

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

 Score = 38.7 bits (88), Expect = 9e-04
 Identities = 12/71 (16%), Positives = 26/71 (36%), Gaps = 6/71 (8%)

Query: 84  PLEFGNLKDLDALRLRGNKLDGLIPSSI-----GNLTNLTHLDLSLNQLSGRLPQEVGNL 138
                    L  LRL+ N+++     ++       + +L  L+L+ N+ S      V  +
Sbjct: 266 AFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSE-EDDVVDEI 324

Query: 139 KNLLSLFLDNN 149
           + + S      
Sbjct: 325 REVFSTRGRGE 335

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Length = 344

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

 Score = 37.6 bits (85), Expect = 0.002
 Identities = 45/318 (14%), Positives = 88/318 (27%), Gaps = 21/318 (6%)

Query: 35  IPSEIGALSKLEELALPYNSLTG----TIPAEIGSLRNLVELDLSNN---ILNGSIPLEF 87
           + + +     ++E+ L  N++       +   I S ++L   + S+     +   IP   
Sbjct: 23  VFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEAL 82

Query: 88  GNLKDLDALRLRGNKLDGLIPSSIGNLTNLTHLDLSLNQLSGRLPQEVGNLKNLLSLFLD 147
             L        + + +     +            LS +     L      L       + 
Sbjct: 83  RLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIA 142

Query: 148 NNNLTGPIPSTLYHLNQLSNLYLAYNNL-VGPLPKEVGNMKNLDSLLLNRNSLTGPIPST 206
                  +     +   L ++    N L  G + +     ++   L   +    G  P  
Sbjct: 143 RALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEG 202

Query: 207 IGYLNLGGKLDLSHNRLDSPIPPTIGNLTNLTSLDLSSNQLSGLLPREVGNLKYLDSLSL 266
           I +L L G       ++      T  +L +        +  +               LS 
Sbjct: 203 IEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDC-----LLSA 257

Query: 267 DGNNLIGSIPPTIGYLTNLTSLNLGYNQLSSSIPPELM-----NCSQLQNLVLSHNTLS- 320
            G   +     +      L +L L YN++       L          L  L L+ N  S 
Sbjct: 258 RGAAAVVD-AFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSE 316

Query: 321 -GIVPPEIGNLTHLRQLD 337
              V  EI  +   R   
Sbjct: 317 EDDVVDEIREVFSTRGRG 334

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]} Length = 198

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

 Score = 38.5 bits (88), Expect = 6e-04
 Identities = 29/170 (17%), Positives = 49/170 (28%), Gaps = 16/170 (9%)

Query: 86  EFGNLKDLDALRLRGNKLDGLIP------SSIGNLTNLTHLDLSLNQLSGRLPQEVGNLK 139
            F   K + A      +L G+IP      +++  L    HL LS N +       +  ++
Sbjct: 13  IFEERKSVVATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEK--ISSLSGME 70

Query: 140 NLLSLFLDNNNLTGPIPSTLYHLNQLSNLYLAYNNLVGPLPKEVGNMKNLDS----LLLN 195
           NL  L L  N +                             +++ N++ L      +   
Sbjct: 71  NLRILSLGRNLIKKIENLDAVADTLEELWISYNQIASLSGIEKLVNLRVLYMSNNKITNW 130

Query: 196 RNSLTGPIPSTIGYLNLGG----KLDLSHNRLDSPIPPTIGNLTNLTSLD 241
                      +  L L G         +N         +  L NL  LD
Sbjct: 131 GEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD 180

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	408
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	99.95
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	99.94
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	99.92
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	99.92
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	99.92
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	99.9
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	99.89
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	99.89
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	99.83
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	99.82
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	99.79
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	99.77
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	99.73
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	99.72
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	99.71
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	99.7
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	99.68
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	99.67
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	99.66
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	99.65
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.64
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.64
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.64
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	99.63
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	99.63
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.62
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	99.48
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	99.48
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	99.44
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	99.4
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	99.37
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	99.35
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	99.26
d2ifga3	156	High affinity nerve growth factor receptor, N-term	99.21
d2ifga3	156	High affinity nerve growth factor receptor, N-term	99.2
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	99.07
d1koha1	162	mRNA export factor tap {Human (Homo sapiens) [TaxI	98.05
d1koha1	162	mRNA export factor tap {Human (Homo sapiens) [TaxI	97.98
d1pgva_	167	Tropomodulin C-terminal domain {nematode (Caenorha	97.79
d1pgva_	167	Tropomodulin C-terminal domain {nematode (Caenorha	97.77
d1io0a_	166	Tropomodulin C-terminal domain {Chicken (Gallus ga	97.21
d1io0a_	166	Tropomodulin C-terminal domain {Chicken (Gallus ga	97.01

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.95  E-value=2.4e-25  Score=203.04  Aligned_cols=339  Identities=28%  Similarity=0.368  Sum_probs=179.1

Q ss_pred             CCCcEEEcCCCccccccchhhccCCCCcEEeCCCCcCCCCCcccccCCCCCcEEeCCCceecccCcccccCCCCCceeec
Q 037302           19 PNLESIIIPYTLLSGRIPSEIGALSKLEELALPYNSLTGTIPAEIGSLRNLVELDLSNNILNGSIPLEFGNLKDLDALRL   98 (408)
Q Consensus        19 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l   98 (408)
                      .+|++|+++++.+.. + +.+..+++|++|++++|++++..  .++++++|++|++++|.+.+..  .+..+++|+.+++
T Consensus        44 ~~l~~L~l~~~~I~~-l-~gl~~L~nL~~L~Ls~N~l~~l~--~l~~L~~L~~L~L~~n~i~~i~--~l~~l~~L~~L~~  117 (384)
T d2omza2          44 DQVTTLQADRLGIKS-I-DGVEYLNNLTQINFSNNQLTDIT--PLKNLTKLVDILMNNNQIADIT--PLANLTNLTGLTL  117 (384)
T ss_dssp             TTCCEEECCSSCCCC-C-TTGGGCTTCCEEECCSSCCCCCG--GGTTCTTCCEEECCSSCCCCCG--GGTTCTTCCEEEC
T ss_pred             CCCCEEECCCCCCCC-c-cccccCCCCCEEeCcCCcCCCCc--cccCCccccccccccccccccc--ccccccccccccc
Confidence            345555555555442 1 23455555555555555554331  2555555555555555554221  2445555555555


Q ss_pred             CCccccccCCCcCCCCCCCCEEEcCCCeecccCcccccCCCCCceEeccCCcccCcCchhhccCCCCCEEEcCCCcCCCC
Q 037302           99 RGNKLDGLIPSSIGNLTNLTHLDLSLNQLSGRLPQEVGNLKNLLSLFLDNNNLTGPIPSTLYHLNQLSNLYLAYNNLVGP  178 (408)
Q Consensus        99 ~~~~i~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~  178 (408)
                      .++.++...+  ......+.......+.+.....................     .....+...+.........+...  
T Consensus       118 ~~~~~~~~~~--~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~--  188 (384)
T d2omza2         118 FNNQITDIDP--LKNLTNLNRLELSSNTISDISALSGLTSLQQLSFGNQV-----TDLKPLANLTTLERLDISSNKVS--  188 (384)
T ss_dssp             CSSCCCCCGG--GTTCTTCSEEEEEEEEECCCGGGTTCTTCSEEEEEESC-----CCCGGGTTCTTCCEEECCSSCCC--
T ss_pred             cccccccccc--cccccccccccccccccccccccccccccccccccccc-----chhhhhccccccccccccccccc--
Confidence            5554432211  22233344444333333211111111111111110000     01111222233333333333222  


Q ss_pred             CCccccCCCCCCEEEecCcccccccCcccccccccCeEEccCCcCCCCCCcccCCCCCccEEEccCCcccccCCccccCC
Q 037302          179 LPKEVGNMKNLDSLLLNRNSLTGPIPSTIGYLNLGGKLDLSHNRLDSPIPPTIGNLTNLTSLDLSSNQLSGLLPREVGNL  258 (408)
Q Consensus       179 ~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~  258 (408)
                      ....+..+++++.+.++++.+.+..  .+..++.++.++++++.+...  ..+..+++|+.+++++|.+.+..  .+..+
T Consensus       189 ~~~~~~~l~~~~~l~l~~n~i~~~~--~~~~~~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~--~~~~~  262 (384)
T d2omza2         189 DISVLAKLTNLESLIATNNQISDIT--PLGILTNLDELSLNGNQLKDI--GTLASLTNLTDLDLANNQISNLA--PLSGL  262 (384)
T ss_dssp             CCGGGGGCTTCSEEECCSSCCCCCG--GGGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCG--GGTTC
T ss_pred             cccccccccccceeeccCCccCCCC--cccccCCCCEEECCCCCCCCc--chhhcccccchhccccCccCCCC--ccccc
Confidence            2234556677777777776665432  234556777777777766542  24556677777777777665332  35566


Q ss_pred             CCCCEEeCCCCcccccCCccccCCCCCcEEeCCCCccccCCCcCCcCCCCCcEEEcCCCccCCcCCcccccCCCccEEEc
Q 037302          259 KYLDSLSLDGNNLIGSIPPTIGYLTNLTSLNLGYNQLSSSIPPELMNCSQLQNLVLSHNTLSGIVPPEIGNLTHLRQLDL  338 (408)
Q Consensus       259 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l  338 (408)
                      ++|+.|+++++.+...  ..+..++.++.+.+.+|.++.  ...+..++++++|++++|++.+.  ..+..+++|++|++
T Consensus       263 ~~L~~L~l~~~~l~~~--~~~~~~~~l~~l~~~~n~l~~--~~~~~~~~~l~~L~ls~n~l~~l--~~l~~l~~L~~L~L  336 (384)
T d2omza2         263 TKLTELKLGANQISNI--SPLAGLTALTNLELNENQLED--ISPISNLKNLTYLTLYFNNISDI--SPVSSLTKLQRLFF  336 (384)
T ss_dssp             TTCSEEECCSSCCCCC--GGGTTCTTCSEEECCSSCCSC--CGGGGGCTTCSEEECCSSCCSCC--GGGGGCTTCCEEEC
T ss_pred             ccCCEeeccCcccCCC--Ccccccccccccccccccccc--ccccchhcccCeEECCCCCCCCC--cccccCCCCCEEEC
Confidence            7777777777766532  235566777777777776663  23356667777777777777644  23666777777777


Q ss_pred             CCccccccCCcCCCCCCCccEEeCCCCccCCcCC-ccccCCCeEEccCC
Q 037302          339 SHNFINGTIPSQLGYIPNISAVDLSKNNLSGVVP-ASVRIIPKLIVSEN  386 (408)
Q Consensus       339 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~-~~~~~l~~l~l~~n  386 (408)
                      ++|++++ ++ .+..+++|+.|++++|+++++.| ..+.++++|++++|
T Consensus       337 ~~n~l~~-l~-~l~~l~~L~~L~l~~N~l~~l~~l~~l~~L~~L~L~~N  383 (384)
T d2omza2         337 ANNKVSD-VS-SLANLTNINWLSAGHNQISDLTPLANLTRITQLGLNDQ  383 (384)
T ss_dssp             CSSCCCC-CG-GGGGCTTCCEEECCSSCCCBCGGGTTCTTCSEEECCCE
T ss_pred             CCCCCCC-Ch-hHcCCCCCCEEECCCCcCCCChhhccCCCCCEeeCCCC
Confidence            7777763 23 46677777777777777777655 33446667777766

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.94  E-value=9.2e-25  Score=199.13  Aligned_cols=339  Identities=27%  Similarity=0.301  Sum_probs=242.3

Q ss_pred             ccCCCCcEEeCCCCcCCCCCcccccCCCCCcEEeCCCceecccCcccccCCCCCceeecCCccccccCCCcCCCCCCCCE
Q 037302           40 GALSKLEELALPYNSLTGTIPAEIGSLRNLVELDLSNNILNGSIPLEFGNLKDLDALRLRGNKLDGLIPSSIGNLTNLTH  119 (408)
Q Consensus        40 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~l~~l~~L~~  119 (408)
                      +.+.+|++|.++++.++..  ..+..+++|++|++++|++.+..  .+.++++|++|++++|.+..+.  .++++++|+.
T Consensus        41 ~~l~~l~~L~l~~~~I~~l--~gl~~L~nL~~L~Ls~N~l~~l~--~l~~L~~L~~L~L~~n~i~~i~--~l~~l~~L~~  114 (384)
T d2omza2          41 TDLDQVTTLQADRLGIKSI--DGVEYLNNLTQINFSNNQLTDIT--PLKNLTKLVDILMNNNQIADIT--PLANLTNLTG  114 (384)
T ss_dssp             HHHTTCCEEECCSSCCCCC--TTGGGCTTCCEEECCSSCCCCCG--GGTTCTTCCEEECCSSCCCCCG--GGTTCTTCCE
T ss_pred             HHhCCCCEEECCCCCCCCc--cccccCCCCCEEeCcCCcCCCCc--cccCCccccccccccccccccc--cccccccccc
Confidence            4566888899988888743  45777888889999888887443  3788888888888888877553  3778888888


Q ss_pred             EEcCCCeecccCcccccCCCCCceEeccCCcccCcCchhhccCCCCCEEEcCCCcCCCCCCccccCCCCCCEEEecCccc
Q 037302          120 LDLSLNQLSGRLPQEVGNLKNLLSLFLDNNNLTGPIPSTLYHLNQLSNLYLAYNNLVGPLPKEVGNMKNLDSLLLNRNSL  199 (408)
Q Consensus       120 L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~  199 (408)
                      +++.++.+.+..  .......+.......+.+.....................     .....+.............+..
T Consensus       115 L~~~~~~~~~~~--~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~  187 (384)
T d2omza2         115 LTLFNNQITDID--PLKNLTNLNRLELSSNTISDISALSGLTSLQQLSFGNQV-----TDLKPLANLTTLERLDISSNKV  187 (384)
T ss_dssp             EECCSSCCCCCG--GGTTCTTCSEEEEEEEEECCCGGGTTCTTCSEEEEEESC-----CCCGGGTTCTTCCEEECCSSCC
T ss_pred             cccccccccccc--ccccccccccccccccccccccccccccccccccccccc-----chhhhhcccccccccccccccc
Confidence            888887776332  233445555665555544422211111111111111111     1122344445555555444433


Q ss_pred             ccccCcccccccccCeEEccCCcCCCCCCcccCCCCCccEEEccCCcccccCCccccCCCCCCEEeCCCCcccccCCccc
Q 037302          200 TGPIPSTIGYLNLGGKLDLSHNRLDSPIPPTIGNLTNLTSLDLSSNQLSGLLPREVGNLKYLDSLSLDGNNLIGSIPPTI  279 (408)
Q Consensus       200 ~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~  279 (408)
                      .  .......++.++.+.++++.+....+  ...+++|++|++++|.+.+.  ..+..+++|+.+++.++.+...  ..+
T Consensus       188 ~--~~~~~~~l~~~~~l~l~~n~i~~~~~--~~~~~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~--~~~  259 (384)
T d2omza2         188 S--DISVLAKLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQLKDI--GTLASLTNLTDLDLANNQISNL--APL  259 (384)
T ss_dssp             C--CCGGGGGCTTCSEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCC--GGG
T ss_pred             c--cccccccccccceeeccCCccCCCCc--ccccCCCCEEECCCCCCCCc--chhhcccccchhccccCccCCC--Ccc
Confidence            2  34556778899999999998876543  45678999999999988743  3577889999999999988744  347


Q ss_pred             cCCCCCcEEeCCCCccccCCCcCCcCCCCCcEEEcCCCccCCcCCcccccCCCccEEEcCCccccccCCcCCCCCCCccE
Q 037302          280 GYLTNLTSLNLGYNQLSSSIPPELMNCSQLQNLVLSHNTLSGIVPPEIGNLTHLRQLDLSHNFINGTIPSQLGYIPNISA  359 (408)
Q Consensus       280 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~  359 (408)
                      ..+++|++|+++++.+.+.  ..+..++.++.+.+.+|.+.+.  ..+..+++++.+++++|.+++..  .+..+++|+.
T Consensus       260 ~~~~~L~~L~l~~~~l~~~--~~~~~~~~l~~l~~~~n~l~~~--~~~~~~~~l~~L~ls~n~l~~l~--~l~~l~~L~~  333 (384)
T d2omza2         260 SGLTKLTELKLGANQISNI--SPLAGLTALTNLELNENQLEDI--SPISNLKNLTYLTLYFNNISDIS--PVSSLTKLQR  333 (384)
T ss_dssp             TTCTTCSEEECCSSCCCCC--GGGTTCTTCSEEECCSSCCSCC--GGGGGCTTCSEEECCSSCCSCCG--GGGGCTTCCE
T ss_pred             cccccCCEeeccCcccCCC--Cccccccccccccccccccccc--cccchhcccCeEECCCCCCCCCc--ccccCCCCCE
Confidence            7889999999999998743  2477889999999999998753  46788999999999999998653  3788999999


Q ss_pred             EeCCCCccCCcC-CccccCCCeEEccCCccCCCCCCCcCCCCCCCCCCC
Q 037302          360 VDLSKNNLSGVV-PASVRIIPKLIVSENNLELENSTSSENAPPPQAKPF  407 (408)
Q Consensus       360 L~l~~~~l~~~~-~~~~~~l~~l~l~~n~~~~~~~~~~~~~~~~~~~~~  407 (408)
                      |++++|+++++. -..+.+|++|++++|++++-+|  +.+|+.|+.+.+
T Consensus       334 L~L~~n~l~~l~~l~~l~~L~~L~l~~N~l~~l~~--l~~l~~L~~L~L  380 (384)
T d2omza2         334 LFFANNKVSDVSSLANLTNINWLSAGHNQISDLTP--LANLTRITQLGL  380 (384)
T ss_dssp             EECCSSCCCCCGGGGGCTTCCEEECCSSCCCBCGG--GTTCTTCSEEEC
T ss_pred             EECCCCCCCCChhHcCCCCCCEEECCCCcCCCChh--hccCCCCCEeeC
Confidence            999999998754 2334578899999999987655  788888877654

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=99.92  E-value=1.1e-24  Score=192.87  Aligned_cols=254  Identities=31%  Similarity=0.484  Sum_probs=180.9

Q ss_pred             CCceEeccCCcccC--cCchhhccCCCCCEEEcCC-CcCCCCCCccccCCCCCCEEEecCcccccccCcccccccccCeE
Q 037302          140 NLLSLFLDNNNLTG--PIPSTLYHLNQLSNLYLAY-NNLVGPLPKEVGNMKNLDSLLLNRNSLTGPIPSTIGYLNLGGKL  216 (408)
Q Consensus       140 ~L~~L~l~~~~~~~--~~~~~~~~~~~L~~L~l~~-~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l  216 (408)
                      +++.|+++++.+..  .++..+.+++.|++|++++ +.+...+|..+.++++|++|++++|.+.+..+..+.....|+.+
T Consensus        51 ~v~~L~L~~~~l~g~~~lp~~l~~L~~L~~L~Ls~~N~l~g~iP~~i~~L~~L~~L~Ls~N~l~~~~~~~~~~~~~L~~l  130 (313)
T d1ogqa_          51 RVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTL  130 (313)
T ss_dssp             CEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEE
T ss_pred             EEEEEECCCCCCCCCCCCChHHhcCccccccccccccccccccccccccccccchhhhccccccccccccccchhhhccc
Confidence            35555555555443  2345566666666666664 44544556666667777777777776665555666667777777


Q ss_pred             EccCCcCCCCCCcccCCCCCccEEEccCCcccccCCccccCCCCC-CEEeCCCCcccccCCccccCCCCCcEEeCCCCcc
Q 037302          217 DLSHNRLDSPIPPTIGNLTNLTSLDLSSNQLSGLLPREVGNLKYL-DSLSLDGNNLIGSIPPTIGYLTNLTSLNLGYNQL  295 (408)
Q Consensus       217 ~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L-~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~  295 (408)
                      +++.+......+..+..++.++.++++++.+.+..+..+..+..+ +.+.++++.+....+..+.... ...+++.++..
T Consensus       131 ~l~~N~~~~~~p~~l~~l~~L~~l~l~~n~l~~~ip~~~~~l~~l~~~l~~~~n~l~~~~~~~~~~l~-~~~l~l~~~~~  209 (313)
T d1ogqa_         131 DFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSRNML  209 (313)
T ss_dssp             ECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCC-CSEEECCSSEE
T ss_pred             ccccccccccCchhhccCcccceeeccccccccccccccccccccccccccccccccccccccccccc-ccccccccccc
Confidence            777776666666677777788888888877776666666666554 7778888877766665555543 44688888887


Q ss_pred             ccCCCcCCcCCCCCcEEEcCCCccCCcCCcccccCCCccEEEcCCccccccCCcCCCCCCCccEEeCCCCccCCcCCcc-
Q 037302          296 SSSIPPELMNCSQLQNLVLSHNTLSGIVPPEIGNLTHLRQLDLSHNFINGTIPSQLGYIPNISAVDLSKNNLSGVVPAS-  374 (408)
Q Consensus       296 ~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~-  374 (408)
                      ....+..+..+++++.++++++.+.+.. ..+..+++|+.|++++|++++.+|..+..+++|+.|++++|+++|.+|+. 
T Consensus       210 ~~~~~~~~~~~~~l~~l~~~~~~l~~~~-~~~~~~~~L~~L~Ls~N~l~g~iP~~l~~L~~L~~L~Ls~N~l~g~iP~~~  288 (313)
T d1ogqa_         210 EGDASVLFGSDKNTQKIHLAKNSLAFDL-GKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQGG  288 (313)
T ss_dssp             EECCGGGCCTTSCCSEEECCSSEECCBG-GGCCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCCST
T ss_pred             cccccccccccccccccccccccccccc-cccccccccccccCccCeecccCChHHhCCCCCCEEECcCCcccccCCCcc
Confidence            7777777778888889998888877443 45677788999999999998888888888999999999999998877753 


Q ss_pred             -ccCCCeEEccCCc-cCC-CCCCC
Q 037302          375 -VRIIPKLIVSENN-LEL-ENSTS  395 (408)
Q Consensus       375 -~~~l~~l~l~~n~-~~~-~~~~~  395 (408)
                       +.+++.+++++|+ +.| ++|+|
T Consensus       289 ~L~~L~~l~l~~N~~l~g~plp~c  312 (313)
T d1ogqa_         289 NLQRFDVSAYANNKCLCGSPLPAC  312 (313)
T ss_dssp             TGGGSCGGGTCSSSEEESTTSSCC
T ss_pred             cCCCCCHHHhCCCccccCCCCCCC
Confidence             4567788889997 555 36654

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.92  E-value=1.4e-22  Score=178.52  Aligned_cols=108  Identities=27%  Similarity=0.327  Sum_probs=49.8

Q ss_pred             CCCEEeCCCCcccccCCccccCCCCCcEEeCCCCccccCCCcCCcCCCCCcEEEcCCCccCCcCCcccccCCCccEEEcC
Q 037302          260 YLDSLSLDGNNLIGSIPPTIGYLTNLTSLNLGYNQLSSSIPPELMNCSQLQNLVLSHNTLSGIVPPEIGNLTHLRQLDLS  339 (408)
Q Consensus       260 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~  339 (408)
                      +|+.|++.++.........+..++.+++|++++|.++...+..+.++++|++|++++|+++. ++.++..+++|++|+++
T Consensus       172 ~L~~L~l~~n~~~~~~~~~~~~~~~l~~L~~s~n~l~~~~~~~~~~l~~L~~L~L~~N~L~~-lp~~l~~l~~L~~L~Ls  250 (305)
T d1xkua_         172 SLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLVK-VPGGLADHKYIQVVYLH  250 (305)
T ss_dssp             TCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCSS-CCTTTTTCSSCCEEECC
T ss_pred             ccCEEECCCCcCCCCChhHhhccccccccccccccccccccccccccccceeeecccccccc-cccccccccCCCEEECC
Confidence            34444444443333333334444444444444444444444444444555555555554442 23344445555555555


Q ss_pred             CccccccCCcC------CCCCCCccEEeCCCCccC
Q 037302          340 HNFINGTIPSQ------LGYIPNISAVDLSKNNLS  368 (408)
Q Consensus       340 ~~~~~~~~~~~------~~~~~~L~~L~l~~~~l~  368 (408)
                      +|+++......      ....++|+.|++++|+++
T Consensus       251 ~N~i~~i~~~~f~~~~~~~~~~~L~~L~L~~N~~~  285 (305)
T d1xkua_         251 NNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQ  285 (305)
T ss_dssp             SSCCCCCCTTSSSCSSCCTTSCCCSEEECCSSSSC
T ss_pred             CCccCccChhhccCcchhcccCCCCEEECCCCcCc
Confidence            55554322222      223455666666666554

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.92  E-value=7.1e-23  Score=180.38  Aligned_cols=275  Identities=24%  Similarity=0.313  Sum_probs=188.6

Q ss_pred             CCceeecCCccccccCCCcCCCCCCCCEEEcCCCeecccCcccccCCCCCceEeccCCcccCcCchhhccCCCCCEEEcC
Q 037302           92 DLDALRLRGNKLDGLIPSSIGNLTNLTHLDLSLNQLSGRLPQEVGNLKNLLSLFLDNNNLTGPIPSTLYHLNQLSNLYLA  171 (408)
Q Consensus        92 ~L~~L~l~~~~i~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~  171 (408)
                      .++.++-++.+++.+++ .+  .+++++|++++|.++...+.+|..+++|++++++++.+....+..|..++.|+.++++
T Consensus        11 ~~~~~~C~~~~L~~lP~-~l--~~~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~l~~n~~~~i~~~~f~~l~~L~~L~l~   87 (305)
T d1xkua_          11 HLRVVQCSDLGLEKVPK-DL--PPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLS   87 (305)
T ss_dssp             ETTEEECTTSCCCSCCC-SC--CTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECC
T ss_pred             cCCEEEecCCCCCccCC-CC--CCCCCEEECcCCcCCCcChhHhhccccccccccccccccccchhhhhCCCccCEeccc
Confidence            45556666655554432 33  2567777777776664444456666777777777666665555556666666666666


Q ss_pred             CCcCCCCCCccccCCCCCCEEEecCcccccccCcccccccccCeEEccCCcCCCCCCcccCCCCCccEEEccCCcc--cc
Q 037302          172 YNNLVGPLPKEVGNMKNLDSLLLNRNSLTGPIPSTIGYLNLGGKLDLSHNRLDSPIPPTIGNLTNLTSLDLSSNQL--SG  249 (408)
Q Consensus       172 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~--~~  249 (408)
                      +|.+... +.  ...+.++.+...++.+.                        ......+.....+..+....+..  ..
T Consensus        88 ~n~l~~l-~~--~~~~~l~~L~~~~n~l~------------------------~l~~~~~~~~~~~~~l~~~~n~~~~~~  140 (305)
T d1xkua_          88 KNQLKEL-PE--KMPKTLQELRVHENEIT------------------------KVRKSVFNGLNQMIVVELGTNPLKSSG  140 (305)
T ss_dssp             SSCCSBC-CS--SCCTTCCEEECCSSCCC------------------------BBCHHHHTTCTTCCEEECCSSCCCGGG
T ss_pred             CCccCcC-cc--chhhhhhhhhccccchh------------------------hhhhhhhhccccccccccccccccccC
Confidence            6655432 11  22334555555544443                        22222333344455555554422  22


Q ss_pred             cCCccccCCCCCCEEeCCCCcccccCCccccCCCCCcEEeCCCCccccCCCcCCcCCCCCcEEEcCCCccCCcCCccccc
Q 037302          250 LLPREVGNLKYLDSLSLDGNNLIGSIPPTIGYLTNLTSLNLGYNQLSSSIPPELMNCSQLQNLVLSHNTLSGIVPPEIGN  329 (408)
Q Consensus       250 ~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~  329 (408)
                      .....+..+++|+.+++.++.+.... .  ..+++|++|++++|......+..+.+++.++.|++++|.+.+..+..+.+
T Consensus       141 ~~~~~~~~l~~L~~l~l~~n~l~~l~-~--~~~~~L~~L~l~~n~~~~~~~~~~~~~~~l~~L~~s~n~l~~~~~~~~~~  217 (305)
T d1xkua_         141 IENGAFQGMKKLSYIRIADTNITTIP-Q--GLPPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLAN  217 (305)
T ss_dssp             BCTTGGGGCTTCCEEECCSSCCCSCC-S--SCCTTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGG
T ss_pred             CCccccccccccCccccccCCccccC-c--ccCCccCEEECCCCcCCCCChhHhhccccccccccccccccccccccccc
Confidence            33445667788999999888776432 2  24689999999999999888888999999999999999999888889999


Q ss_pred             CCCccEEEcCCccccccCCcCCCCCCCccEEeCCCCccCCcCCcccc---------CCCeEEccCCccC-C-CCCCCcCC
Q 037302          330 LTHLRQLDLSHNFINGTIPSQLGYIPNISAVDLSKNNLSGVVPASVR---------IIPKLIVSENNLE-L-ENSTSSEN  398 (408)
Q Consensus       330 ~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~---------~l~~l~l~~n~~~-~-~~~~~~~~  398 (408)
                      +++|++|++++|.++ .+|..+..+++|+.|++++|+|+.+....|.         +++.|++++|+++ + ..|..|++
T Consensus       218 l~~L~~L~L~~N~L~-~lp~~l~~l~~L~~L~Ls~N~i~~i~~~~f~~~~~~~~~~~L~~L~L~~N~~~~~~~~~~~f~~  296 (305)
T d1xkua_         218 TPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRC  296 (305)
T ss_dssp             STTCCEEECCSSCCS-SCCTTTTTCSSCCEEECCSSCCCCCCTTSSSCSSCCTTSCCCSEEECCSSSSCGGGSCGGGGTT
T ss_pred             cccceeeeccccccc-ccccccccccCCCEEECCCCccCccChhhccCcchhcccCCCCEEECCCCcCccCcCCHhHhcc
Confidence            999999999999998 6688899999999999999999987665543         4669999999986 2 34444444


Q ss_pred             CC
Q 037302          399 AP  400 (408)
Q Consensus       399 ~~  400 (408)
                      +.
T Consensus       297 ~~  298 (305)
T d1xkua_         297 VY  298 (305)
T ss_dssp             CC
T ss_pred             cc
Confidence            43

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=99.90  E-value=6.7e-24  Score=187.67  Aligned_cols=252  Identities=30%  Similarity=0.481  Sum_probs=157.3

Q ss_pred             CCceeecCCcccccc--CCCcCCCCCCCCEEEcCC-CeecccCcccccCCCCCceEeccCCcccCcCchhhccCCCCCEE
Q 037302           92 DLDALRLRGNKLDGL--IPSSIGNLTNLTHLDLSL-NQLSGRLPQEVGNLKNLLSLFLDNNNLTGPIPSTLYHLNQLSNL  168 (408)
Q Consensus        92 ~L~~L~l~~~~i~~~--~~~~l~~l~~L~~L~l~~-~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L  168 (408)
                      +++.|+++++.+...  .|..+.++++|++|++++ |.+.+.+|..+..+++|++|++++|.+....+..+.        
T Consensus        51 ~v~~L~L~~~~l~g~~~lp~~l~~L~~L~~L~Ls~~N~l~g~iP~~i~~L~~L~~L~Ls~N~l~~~~~~~~~--------  122 (313)
T d1ogqa_          51 RVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLS--------  122 (313)
T ss_dssp             CEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGG--------
T ss_pred             EEEEEECCCCCCCCCCCCChHHhcCccccccccccccccccccccccccccccchhhhcccccccccccccc--------
Confidence            455566655554421  334455555555555543 344334444455555555555555544443344444        


Q ss_pred             EcCCCcCCCCCCccccCCCCCCEEEecCcccccccCcccccccccCeEEccCCcCCCCCCcccCCCCCc-cEEEccCCcc
Q 037302          169 YLAYNNLVGPLPKEVGNMKNLDSLLLNRNSLTGPIPSTIGYLNLGGKLDLSHNRLDSPIPPTIGNLTNL-TSLDLSSNQL  247 (408)
Q Consensus       169 ~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~l~~~~~L-~~L~l~~~~~  247 (408)
                                      .+++|+.+++..|.+....+..+..++.++.++++++.+.+..+..+..+..+ +.+.++++.+
T Consensus       123 ----------------~~~~L~~l~l~~N~~~~~~p~~l~~l~~L~~l~l~~n~l~~~ip~~~~~l~~l~~~l~~~~n~l  186 (313)
T d1ogqa_         123 ----------------QIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRL  186 (313)
T ss_dssp             ----------------GCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEE
T ss_pred             ----------------chhhhcccccccccccccCchhhccCcccceeeccccccccccccccccccccccccccccccc
Confidence                            44444444444444444444445555555555555555444444444444443 6677777777


Q ss_pred             cccCCccccCCCCCCEEeCCCCcccccCCccccCCCCCcEEeCCCCccccCCCcCCcCCCCCcEEEcCCCccCCcCCccc
Q 037302          248 SGLLPREVGNLKYLDSLSLDGNNLIGSIPPTIGYLTNLTSLNLGYNQLSSSIPPELMNCSQLQNLVLSHNTLSGIVPPEI  327 (408)
Q Consensus       248 ~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~  327 (408)
                      .+..+..+.... ...+++.++......+..+..+++++.++++++.+.... ..+..+++|+.|++++|++++..+..+
T Consensus       187 ~~~~~~~~~~l~-~~~l~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~l~~~~-~~~~~~~~L~~L~Ls~N~l~g~iP~~l  264 (313)
T d1ogqa_         187 TGKIPPTFANLN-LAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDL-GKVGLSKNLNGLDLRNNRIYGTLPQGL  264 (313)
T ss_dssp             EEECCGGGGGCC-CSEEECCSSEEEECCGGGCCTTSCCSEEECCSSEECCBG-GGCCCCTTCCEEECCSSCCEECCCGGG
T ss_pred             cccccccccccc-ccccccccccccccccccccccccccccccccccccccc-cccccccccccccCccCeecccCChHH
Confidence            655555555443 446777777776666677777888888888888877443 356777888999999998887888888


Q ss_pred             ccCCCccEEEcCCccccccCCcCCCCCCCccEEeCCCCc-cCCc
Q 037302          328 GNLTHLRQLDLSHNFINGTIPSQLGYIPNISAVDLSKNN-LSGV  370 (408)
Q Consensus       328 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~-l~~~  370 (408)
                      .++++|++|++++|++++.+|. +.++++|+.+.+.+|+ +.|.
T Consensus       265 ~~L~~L~~L~Ls~N~l~g~iP~-~~~L~~L~~l~l~~N~~l~g~  307 (313)
T d1ogqa_         265 TQLKFLHSLNVSFNNLCGEIPQ-GGNLQRFDVSAYANNKCLCGS  307 (313)
T ss_dssp             GGCTTCCEEECCSSEEEEECCC-STTGGGSCGGGTCSSSEEEST
T ss_pred             hCCCCCCEEECcCCcccccCCC-cccCCCCCHHHhCCCccccCC
Confidence            8899999999999998877774 4678888889999997 4543

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.89  E-value=9.1e-23  Score=177.63  Aligned_cols=236  Identities=24%  Similarity=0.204  Sum_probs=161.3

Q ss_pred             CCCEEEcCCCcCCCCCCccccCCCCCCEEEecCcccccccCcccccccccCeEEcc-CCcCCCCCCcccCCCCCccEEEc
Q 037302          164 QLSNLYLAYNNLVGPLPKEVGNMKNLDSLLLNRNSLTGPIPSTIGYLNLGGKLDLS-HNRLDSPIPPTIGNLTNLTSLDL  242 (408)
Q Consensus       164 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~-~~~~~~~~~~~l~~~~~L~~L~l  242 (408)
                      .+++|++++|++....+..|..+++|++++++++.+.......+.....+..+... .+.+....+..++.+++|++|++
T Consensus        33 ~~~~L~Ls~N~i~~i~~~~f~~l~~L~~L~ls~n~l~~i~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~l~~L~~L~l  112 (284)
T d1ozna_          33 ASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHL  112 (284)
T ss_dssp             TCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEEEC
T ss_pred             CCCEEECcCCcCCCCCHHHhhccccccccccccccccccccccccccccccccccccccccccccchhhcccccCCEEec
Confidence            45555555555544333445555666666666655554445555555666665543 33444455566777777888888


Q ss_pred             cCCcccccCCccccCCCCCCEEeCCCCcccccCCccccCCCCCcEEeCCCCccccCCCcCCcCCCCCcEEEcCCCccCCc
Q 037302          243 SSNQLSGLLPREVGNLKYLDSLSLDGNNLIGSIPPTIGYLTNLTSLNLGYNQLSSSIPPELMNCSQLQNLVLSHNTLSGI  322 (408)
Q Consensus       243 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~  322 (408)
                      +++.+.......+...++|+.+++.++.+.......+..+++|++|++++|.+....+..+.++++|+.+.+++|++.++
T Consensus       113 ~~n~~~~~~~~~~~~~~~L~~l~l~~N~l~~i~~~~f~~~~~L~~L~l~~N~l~~l~~~~f~~l~~L~~l~l~~N~l~~i  192 (284)
T d1ozna_         113 DRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHV  192 (284)
T ss_dssp             TTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEE
T ss_pred             CCcccccccccccchhcccchhhhccccccccChhHhccccchhhcccccCcccccchhhhccccccchhhhhhcccccc
Confidence            87776655556666777788888888877766666677778888888888888777777777888888888888888777


Q ss_pred             CCcccccCCCccEEEcCCccccccCCcCCCCCCCccEEeCCCCccCCcCC-cc-ccCCCeEEccCCccCCCCCCCcCCC
Q 037302          323 VPPEIGNLTHLRQLDLSHNFINGTIPSQLGYIPNISAVDLSKNNLSGVVP-AS-VRIIPKLIVSENNLELENSTSSENA  399 (408)
Q Consensus       323 ~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~-~~-~~~l~~l~l~~n~~~~~~~~~~~~~  399 (408)
                      .+..|..+++|++|++++|.+.+..+..+..+++|+.|++++|++....+ .. ...+++.....+.+.++.|..+.+.
T Consensus       193 ~~~~f~~l~~L~~L~l~~N~i~~~~~~~~~~~~~L~~L~l~~N~l~C~C~~~~l~~~l~~~~~~~~~~~C~~p~~l~g~  271 (284)
T d1ozna_         193 HPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDCRARPLWAWLQKFRGSSSEVPCSLPQRLAGR  271 (284)
T ss_dssp             CTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEECSGGGHHHHHHHHHCCSEECCCBEEESGGGTTC
T ss_pred             ChhHhhhhhhcccccccccccccccccccccccccCEEEecCCCCCCCccchHHHHHHHhCcCCCCceEeCCchHHcCC
Confidence            77788888888888888888887777777888888888888888765422 10 1123466666677777777777653

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.89  E-value=7.4e-23  Score=178.20  Aligned_cols=267  Identities=22%  Similarity=0.193  Sum_probs=149.0

Q ss_pred             eecCCccccccCCCcCCCCCCCCEEEcCCCeecccCcccccCCCCCceEeccCCcccCcCchhhccCCCCCEEEcCC-Cc
Q 037302           96 LRLRGNKLDGLIPSSIGNLTNLTHLDLSLNQLSGRLPQEVGNLKNLLSLFLDNNNLTGPIPSTLYHLNQLSNLYLAY-NN  174 (408)
Q Consensus        96 L~l~~~~i~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~-~~  174 (408)
                      +..++.+++.+ |..+  .+++++|++++|.++...+.+|..+++|++++++++.+.......+..++.++.+.... +.
T Consensus        16 v~c~~~~L~~i-P~~i--p~~~~~L~Ls~N~i~~i~~~~f~~l~~L~~L~ls~n~l~~i~~~~~~~~~~~~~l~~~~~~~   92 (284)
T d1ozna_          16 TSCPQQGLQAV-PVGI--PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQ   92 (284)
T ss_dssp             EECCSSCCSSC-CTTC--CTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTT
T ss_pred             EEcCCCCCCcc-CCCC--CCCCCEEECcCCcCCCCCHHHhhccccccccccccccccccccccccccccccccccccccc
Confidence            44455555533 3223  25677788888777755556677777777777777777655555566666666665543 23


Q ss_pred             CCCCCCccccCCCCCCEEEecCcccccccCcccccccccCeEEccCCcCCCCCCcccCCCCCccEEEccCCcccccCCcc
Q 037302          175 LVGPLPKEVGNMKNLDSLLLNRNSLTGPIPSTIGYLNLGGKLDLSHNRLDSPIPPTIGNLTNLTSLDLSSNQLSGLLPRE  254 (408)
Q Consensus       175 ~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~  254 (408)
                      +....+..++.+++|++|++++|.+......                        .+..+++|+.++++++.++...+..
T Consensus        93 ~~~l~~~~~~~l~~L~~L~l~~n~~~~~~~~------------------------~~~~~~~L~~l~l~~N~l~~i~~~~  148 (284)
T d1ozna_          93 LRSVDPATFHGLGRLHTLHLDRCGLQELGPG------------------------LFRGLAALQYLYLQDNALQALPDDT  148 (284)
T ss_dssp             CCCCCTTTTTTCTTCCEEECTTSCCCCCCTT------------------------TTTTCTTCCEEECCSSCCCCCCTTT
T ss_pred             cccccchhhcccccCCEEecCCccccccccc------------------------ccchhcccchhhhccccccccChhH
Confidence            3333344555566666666655554433333                        3344445555555555554444444


Q ss_pred             ccCCCCCCEEeCCCCcccccCCccccCCCCCcEEeCCCCccccCCCcCCcCCCCCcEEEcCCCccCCcCCcccccCCCcc
Q 037302          255 VGNLKYLDSLSLDGNNLIGSIPPTIGYLTNLTSLNLGYNQLSSSIPPELMNCSQLQNLVLSHNTLSGIVPPEIGNLTHLR  334 (408)
Q Consensus       255 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~  334 (408)
                      |+.+++|+.|+++++.+....+.++..+++|+++++++|.++...+..|..+++|++|++++|++.+..+..|..+++|+
T Consensus       149 f~~~~~L~~L~l~~N~l~~l~~~~f~~l~~L~~l~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~i~~~~~~~~~~~~~L~  228 (284)
T d1ozna_         149 FRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQ  228 (284)
T ss_dssp             TTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCC
T ss_pred             hccccchhhcccccCcccccchhhhccccccchhhhhhccccccChhHhhhhhhcccccccccccccccccccccccccC
Confidence            55555555555555555544445555566666666666666655555566666666666666666655555566666666


Q ss_pred             EEEcCCccccccCCcCCCCCCCccEEeCCCCccCCcCCccccCCCeEEccCCccCC
Q 037302          335 QLDLSHNFINGTIPSQLGYIPNISAVDLSKNNLSGVVPASVRIIPKLIVSENNLEL  390 (408)
Q Consensus       335 ~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~l~l~~n~~~~  390 (408)
                      +|++++|++.-. .........++.+....+++....|..+++....+++.+.+.|
T Consensus       229 ~L~l~~N~l~C~-C~~~~l~~~l~~~~~~~~~~~C~~p~~l~g~~l~~l~~~~l~g  283 (284)
T d1ozna_         229 YLRLNDNPWVCD-CRARPLWAWLQKFRGSSSEVPCSLPQRLAGRDLKRLAANDLQG  283 (284)
T ss_dssp             EEECCSSCEECS-GGGHHHHHHHHHCCSEECCCBEEESGGGTTCBGGGSCGGGSCC
T ss_pred             EEEecCCCCCCC-ccchHHHHHHHhCcCCCCceEeCCchHHcCCccccCCHHHCCC
Confidence            666666655421 1110011124444445555555556666655555566665554

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.83  E-value=2.6e-19  Score=153.78  Aligned_cols=177  Identities=27%  Similarity=0.216  Sum_probs=122.5

Q ss_pred             CCCEEEecCcccccccCcccccccccCeEEccCCcCCCCCCcccCCCCCccEEEccCCcccccCCccccCCCCCCEEeCC
Q 037302          188 NLDSLLLNRNSLTGPIPSTIGYLNLGGKLDLSHNRLDSPIPPTIGNLTNLTSLDLSSNQLSGLLPREVGNLKYLDSLSLD  267 (408)
Q Consensus       188 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~  267 (408)
                      +++.|++++|.+.+.....|..+++|++|++++|.++..  ..++.+++|+.|++++|.+.. ....+..+++|+.|+++
T Consensus        32 ~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~L~~N~l~~l--~~~~~l~~L~~L~Ls~N~l~~-~~~~~~~l~~L~~L~l~  108 (266)
T d1p9ag_          32 DTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKL--QVDGTLPVLGTLDLSHNQLQS-LPLLGQTLPALTVLDVS  108 (266)
T ss_dssp             TCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEE--ECCSCCTTCCEEECCSSCCSS-CCCCTTTCTTCCEEECC
T ss_pred             CCCEEECcCCcCCCcCHHHhhcccccccccccccccccc--ccccccccccccccccccccc-ccccccccccccccccc
Confidence            445555555554433334445555555555555554422  123456677777777776653 34456667778888887


Q ss_pred             CCcccccCCccccCCCCCcEEeCCCCccccCCCcCCcCCCCCcEEEcCCCccCCcCCcccccCCCccEEEcCCccccccC
Q 037302          268 GNNLIGSIPPTIGYLTNLTSLNLGYNQLSSSIPPELMNCSQLQNLVLSHNTLSGIVPPEIGNLTHLRQLDLSHNFINGTI  347 (408)
Q Consensus       268 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~  347 (408)
                      ++.+.......+..++++++|++++|.+....+..+..+++++.+++++|+++...+..|..+++|++|++++|+++ .+
T Consensus       109 ~~~~~~~~~~~~~~l~~l~~L~l~~n~l~~l~~~~~~~l~~l~~l~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~L~-~l  187 (266)
T d1p9ag_         109 FNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLY-TI  187 (266)
T ss_dssp             SSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSCCCTTTTTTCTTCCEEECCSSCCC-CC
T ss_pred             ccccceeeccccccccccccccccccccceeccccccccccchhcccccccccccCccccccccccceeecccCCCc-cc
Confidence            77776666666777788888888888887666666777888888888888888777777888888888888888887 66


Q ss_pred             CcCCCCCCCccEEeCCCCccC
Q 037302          348 PSQLGYIPNISAVDLSKNNLS  368 (408)
Q Consensus       348 ~~~~~~~~~L~~L~l~~~~l~  368 (408)
                      |..+..+++|+.|++++|++.
T Consensus       188 p~~~~~~~~L~~L~L~~Np~~  208 (266)
T d1p9ag_         188 PKGFFGSHLLPFAFLHGNPWL  208 (266)
T ss_dssp             CTTTTTTCCCSEEECCSCCBC
T ss_pred             ChhHCCCCCCCEEEecCCCCC
Confidence            776777888888888888775

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.82  E-value=5.4e-19  Score=151.79  Aligned_cols=201  Identities=28%  Similarity=0.270  Sum_probs=119.1

Q ss_pred             cCCCCCCcEEEcCCCccccccchhhccCCCCcEEeCCCCcCCCCCcccccCCCCCcEEeCCCceecccCcccccCCCCCc
Q 037302           15 FTCFPNLESIIIPYTLLSGRIPSEIGALSKLEELALPYNSLTGTIPAEIGSLRNLVELDLSNNILNGSIPLEFGNLKDLD   94 (408)
Q Consensus        15 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~   94 (408)
                      +++...+.++++++..+. .+|..+.  +++++|+|++|.++...+..|.++++|++|++++|.+.. ++ .+..+++|+
T Consensus         6 ~~~~~~~~~v~C~~~~L~-~iP~~lp--~~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~L~~N~l~~-l~-~~~~l~~L~   80 (266)
T d1p9ag_           6 VSKVASHLEVNCDKRNLT-ALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTK-LQ-VDGTLPVLG   80 (266)
T ss_dssp             EECSTTCCEEECTTSCCS-SCCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCE-EE-CCSCCTTCC
T ss_pred             EcccCCCeEEEccCCCCC-eeCcCcC--cCCCEEECcCCcCCCcCHHHhhccccccccccccccccc-cc-ccccccccc
Confidence            345556666777777666 3454332  467777777777765555667777777777777776653 22 245667777


Q ss_pred             eeecCCccccccCCCcCCCCCCCCEEEcCCCeecccCcccccCCCCCceEeccCCcccCcCchhhccCCCCCEEEcCCCc
Q 037302           95 ALRLRGNKLDGLIPSSIGNLTNLTHLDLSLNQLSGRLPQEVGNLKNLLSLFLDNNNLTGPIPSTLYHLNQLSNLYLAYNN  174 (408)
Q Consensus        95 ~L~l~~~~i~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~  174 (408)
                      +|++++|++.. .+..+..+++|+.|+++++.+.......+..+++++.+++.++.+....+..+..++.++.+++++|.
T Consensus        81 ~L~Ls~N~l~~-~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~l~~L~l~~n~l~~l~~~~~~~l~~l~~l~l~~N~  159 (266)
T d1p9ag_          81 TLDLSHNQLQS-LPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNN  159 (266)
T ss_dssp             EEECCSSCCSS-CCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSC
T ss_pred             ccccccccccc-cccccccccccccccccccccceeeccccccccccccccccccccceeccccccccccchhccccccc
Confidence            77777776653 34456666667777776666655555555566666666666666654444445555666666666666


Q ss_pred             CCCCCCccccCCCCCCEEEecCcccccccCcccccccccCeEEccCCc
Q 037302          175 LVGPLPKEVGNMKNLDSLLLNRNSLTGPIPSTIGYLNLGGKLDLSHNR  222 (408)
Q Consensus       175 ~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~  222 (408)
                      +....+..+..+++|++|++++|.+. .++..+...+.|+.+.+++|+
T Consensus       160 l~~~~~~~~~~l~~L~~L~Ls~N~L~-~lp~~~~~~~~L~~L~L~~Np  206 (266)
T d1p9ag_         160 LTELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGNP  206 (266)
T ss_dssp             CSCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCCCSEEECCSCC
T ss_pred             ccccCccccccccccceeecccCCCc-ccChhHCCCCCCCEEEecCCC
Confidence            55444445555566666666555554 233333344445555554443

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=99.79  E-value=4.8e-16  Score=138.91  Aligned_cols=310  Identities=25%  Similarity=0.238  Sum_probs=156.9

Q ss_pred             CCcEEeCCCCcCCCCCcccccCCCCCcEEeCCCceecccCcccccCCCCCceeecCCccccccCCCcCCCCCCCCEEEcC
Q 037302           44 KLEELALPYNSLTGTIPAEIGSLRNLVELDLSNNILNGSIPLEFGNLKDLDALRLRGNKLDGLIPSSIGNLTNLTHLDLS  123 (408)
Q Consensus        44 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~l~~l~~L~~L~l~  123 (408)
                      +++.|+++++.++ .+|.   ..++|++|++++|++. .+|..   ..+|+.|++.++.++.+. . +  .+.|++|+++
T Consensus        39 ~l~~LdLs~~~L~-~lp~---~~~~L~~L~Ls~N~l~-~lp~~---~~~L~~L~l~~n~l~~l~-~-l--p~~L~~L~L~  106 (353)
T d1jl5a_          39 QAHELELNNLGLS-SLPE---LPPHLESLVASCNSLT-ELPEL---PQSLKSLLVDNNNLKALS-D-L--PPLLEYLGVS  106 (353)
T ss_dssp             TCSEEECTTSCCS-CCCS---CCTTCSEEECCSSCCS-SCCCC---CTTCCEEECCSSCCSCCC-S-C--CTTCCEEECC
T ss_pred             CCCEEEeCCCCCC-CCCC---CCCCCCEEECCCCCCc-ccccc---hhhhhhhhhhhcccchhh-h-h--cccccccccc
Confidence            4555555555544 2222   1244555555555554 33332   235555555555544221 0 1  1345566666


Q ss_pred             CCeecccCcccccCCCCCceEeccCCcccCcCchhhccCCCCCEEEcCCCcCCCCCCccccCCCCCCEEEecCccccccc
Q 037302          124 LNQLSGRLPQEVGNLKNLLSLFLDNNNLTGPIPSTLYHLNQLSNLYLAYNNLVGPLPKEVGNMKNLDSLLLNRNSLTGPI  203 (408)
Q Consensus       124 ~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~  203 (408)
                      +|.+... + .+..+++|+++++.++.+....    .....+..+.+..+....  ...+..++.++.+.+..+......
T Consensus       107 ~n~l~~l-p-~~~~l~~L~~L~l~~~~~~~~~----~~~~~l~~l~~~~~~~~~--~~~l~~l~~l~~L~l~~n~~~~~~  178 (353)
T d1jl5a_         107 NNQLEKL-P-ELQNSSFLKIIDVDNNSLKKLP----DLPPSLEFIAAGNNQLEE--LPELQNLPFLTAIYADNNSLKKLP  178 (353)
T ss_dssp             SSCCSSC-C-CCTTCTTCCEEECCSSCCSCCC----CCCTTCCEEECCSSCCSS--CCCCTTCTTCCEEECCSSCCSSCC
T ss_pred             ccccccc-c-chhhhccceeeccccccccccc----cccccccchhhccccccc--cccccccccceecccccccccccc
Confidence            5555422 2 2344556666666555443211    113344455544433321  123445556666666655443211


Q ss_pred             CcccccccccCeEEccCCcCCCCCCcccCCCCCccEEEccCCcccccCCccccCCCCCCEEeCCCCcccccCCccccCCC
Q 037302          204 PSTIGYLNLGGKLDLSHNRLDSPIPPTIGNLTNLTSLDLSSNQLSGLLPREVGNLKYLDSLSLDGNNLIGSIPPTIGYLT  283 (408)
Q Consensus       204 ~~~~~~~~~L~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~  283 (408)
                          ......+.+...+..+.. . .....++.|+.+.++++.....    .....++..+.+..+.+...    ....+
T Consensus       179 ----~~~~~~~~l~~~~~~~~~-~-~~~~~l~~L~~l~l~~n~~~~~----~~~~~~l~~~~~~~~~~~~~----~~~~~  244 (353)
T d1jl5a_         179 ----DLPLSLESIVAGNNILEE-L-PELQNLPFLTTIYADNNLLKTL----PDLPPSLEALNVRDNYLTDL----PELPQ  244 (353)
T ss_dssp             ----CCCTTCCEEECCSSCCSS-C-CCCTTCTTCCEEECCSSCCSSC----CSCCTTCCEEECCSSCCSCC----CCCCT
T ss_pred             ----cccccccccccccccccc-c-cccccccccccccccccccccc----cccccccccccccccccccc----ccccc
Confidence                111222333443333321 1 2244567777777777654421    12335566677766655422    12334


Q ss_pred             CCcEEeCCCCccccCCCcCCcC-CCCCcEEEcCCCccCCcCCcccccCCCccEEEcCCccccccCCcCCCCCCCccEEeC
Q 037302          284 NLTSLNLGYNQLSSSIPPELMN-CSQLQNLVLSHNTLSGIVPPEIGNLTHLRQLDLSHNFINGTIPSQLGYIPNISAVDL  362 (408)
Q Consensus       284 ~L~~L~l~~~~~~~~~~~~~~~-~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l  362 (408)
                      .+...++..+.+...     .. .......++..+.+...    ...+++|++|++++|+++ .+|.   .+++|+.|++
T Consensus       245 ~l~~~~~~~~~~~~l-----~~l~~~~~~~~~~~~~~~~~----~~~~~~L~~L~Ls~N~l~-~lp~---~~~~L~~L~L  311 (353)
T d1jl5a_         245 SLTFLDVSENIFSGL-----SELPPNLYYLNASSNEIRSL----CDLPPSLEELNVSNNKLI-ELPA---LPPRLERLIA  311 (353)
T ss_dssp             TCCEEECCSSCCSEE-----SCCCTTCCEEECCSSCCSEE----CCCCTTCCEEECCSSCCS-CCCC---CCTTCCEEEC
T ss_pred             ccccccccccccccc-----ccccchhcccccccCccccc----cccCCCCCEEECCCCccC-cccc---ccCCCCEEEC
Confidence            566666655444321     11 13345556666555422    233567888888888877 4453   3577888888


Q ss_pred             CCCccCCcCCccccCCCeEEccCCccCCCCCCCcCCCCCC
Q 037302          363 SKNNLSGVVPASVRIIPKLIVSENNLELENSTSSENAPPP  402 (408)
Q Consensus       363 ~~~~l~~~~~~~~~~l~~l~l~~n~~~~~~~~~~~~~~~~  402 (408)
                      ++|+++. +|+...++++|++++|+++ .+|.....+..|
T Consensus       312 ~~N~L~~-l~~~~~~L~~L~L~~N~L~-~lp~~~~~L~~L  349 (353)
T d1jl5a_         312 SFNHLAE-VPELPQNLKQLHVEYNPLR-EFPDIPESVEDL  349 (353)
T ss_dssp             CSSCCSC-CCCCCTTCCEEECCSSCCS-SCCCCCTTCCEE
T ss_pred             CCCcCCc-cccccCCCCEEECcCCcCC-CCCccccccCee
Confidence            8888874 4566677888888888886 566554444433

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=99.77  E-value=1.9e-15  Score=134.94  Aligned_cols=313  Identities=25%  Similarity=0.258  Sum_probs=208.9

Q ss_pred             CCCcEEEcCCCccccccchhhccCCCCcEEeCCCCcCCCCCcccccCCCCCcEEeCCCceecccCcccccCC-CCCceee
Q 037302           19 PNLESIIIPYTLLSGRIPSEIGALSKLEELALPYNSLTGTIPAEIGSLRNLVELDLSNNILNGSIPLEFGNL-KDLDALR   97 (408)
Q Consensus        19 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l-~~L~~L~   97 (408)
                      .++++|+++++.+. .+|+   ..++|++|++++|+++ .+|..   ..+|+.|++.++.+.. ++    .+ +.|++|+
T Consensus        38 ~~l~~LdLs~~~L~-~lp~---~~~~L~~L~Ls~N~l~-~lp~~---~~~L~~L~l~~n~l~~-l~----~lp~~L~~L~  104 (353)
T d1jl5a_          38 RQAHELELNNLGLS-SLPE---LPPHLESLVASCNSLT-ELPEL---PQSLKSLLVDNNNLKA-LS----DLPPLLEYLG  104 (353)
T ss_dssp             HTCSEEECTTSCCS-CCCS---CCTTCSEEECCSSCCS-SCCCC---CTTCCEEECCSSCCSC-CC----SCCTTCCEEE
T ss_pred             cCCCEEEeCCCCCC-CCCC---CCCCCCEEECCCCCCc-ccccc---hhhhhhhhhhhcccch-hh----hhcccccccc
Confidence            47999999999887 4564   3578999999999988 44543   4689999999998762 22    23 4699999


Q ss_pred             cCCccccccCCCcCCCCCCCCEEEcCCCeecccCcccccCCCCCceEeccCCcccCcCchhhccCCCCCEEEcCCCcCCC
Q 037302           98 LRGNKLDGLIPSSIGNLTNLTHLDLSLNQLSGRLPQEVGNLKNLLSLFLDNNNLTGPIPSTLYHLNQLSNLYLAYNNLVG  177 (408)
Q Consensus        98 l~~~~i~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~  177 (408)
                      ++++.+..+.  .+..+++|++++++++.+... +   ...+.+..+.+..+...  ....+..++.++.+.+..+....
T Consensus       105 L~~n~l~~lp--~~~~l~~L~~L~l~~~~~~~~-~---~~~~~l~~l~~~~~~~~--~~~~l~~l~~l~~L~l~~n~~~~  176 (353)
T d1jl5a_         105 VSNNQLEKLP--ELQNSSFLKIIDVDNNSLKKL-P---DLPPSLEFIAAGNNQLE--ELPELQNLPFLTAIYADNNSLKK  176 (353)
T ss_dssp             CCSSCCSSCC--CCTTCTTCCEEECCSSCCSCC-C---CCCTTCCEEECCSSCCS--SCCCCTTCTTCCEEECCSSCCSS
T ss_pred             cccccccccc--chhhhccceeecccccccccc-c---cccccccchhhcccccc--ccccccccccceecccccccccc
Confidence            9999987553  367899999999999877632 2   23456777777665543  22345678889999998876653


Q ss_pred             CCCccccCCCCCCEEEecCcccccccCcccccccccCeEEccCCcCCCCCCcccCCCCCccEEEccCCcccccCCccccC
Q 037302          178 PLPKEVGNMKNLDSLLLNRNSLTGPIPSTIGYLNLGGKLDLSHNRLDSPIPPTIGNLTNLTSLDLSSNQLSGLLPREVGN  257 (408)
Q Consensus       178 ~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~  257 (408)
                      ..    ......+.+...+..+. . ...+..++.++.+.++++..... +   ....++..+.+.++.+...    ...
T Consensus       177 ~~----~~~~~~~~l~~~~~~~~-~-~~~~~~l~~L~~l~l~~n~~~~~-~---~~~~~l~~~~~~~~~~~~~----~~~  242 (353)
T d1jl5a_         177 LP----DLPLSLESIVAGNNILE-E-LPELQNLPFLTTIYADNNLLKTL-P---DLPPSLEALNVRDNYLTDL----PEL  242 (353)
T ss_dssp             CC----CCCTTCCEEECCSSCCS-S-CCCCTTCTTCCEEECCSSCCSSC-C---SCCTTCCEEECCSSCCSCC----CCC
T ss_pred             cc----ccccccccccccccccc-c-ccccccccccccccccccccccc-c---ccccccccccccccccccc----ccc
Confidence            21    22233445555544433 2 22356678899999988765432 2   2345678888887766522    122


Q ss_pred             CCCCCEEeCCCCcccccCCccccCCCCCcEEeCCCCccccCCCcCCcCCCCCcEEEcCCCccCCcCCcccccCCCccEEE
Q 037302          258 LKYLDSLSLDGNNLIGSIPPTIGYLTNLTSLNLGYNQLSSSIPPELMNCSQLQNLVLSHNTLSGIVPPEIGNLTHLRQLD  337 (408)
Q Consensus       258 ~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~  337 (408)
                      .+.+....+..+......    .-.......++..+.+...    ...+++|++|++++|++.. .+.   .+++|+.|+
T Consensus       243 ~~~l~~~~~~~~~~~~l~----~l~~~~~~~~~~~~~~~~~----~~~~~~L~~L~Ls~N~l~~-lp~---~~~~L~~L~  310 (353)
T d1jl5a_         243 PQSLTFLDVSENIFSGLS----ELPPNLYYLNASSNEIRSL----CDLPPSLEELNVSNNKLIE-LPA---LPPRLERLI  310 (353)
T ss_dssp             CTTCCEEECCSSCCSEES----CCCTTCCEEECCSSCCSEE----CCCCTTCCEEECCSSCCSC-CCC---CCTTCCEEE
T ss_pred             cccccccccccccccccc----cccchhcccccccCccccc----cccCCCCCEEECCCCccCc-ccc---ccCCCCEEE
Confidence            356666666655443211    1123455667766665532    2346789999999998874 333   357899999


Q ss_pred             cCCccccccCCcCCCCCCCccEEeCCCCccCCcCCccccCCCeEEc
Q 037302          338 LSHNFINGTIPSQLGYIPNISAVDLSKNNLSGVVPASVRIIPKLIV  383 (408)
Q Consensus       338 l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~l~l  383 (408)
                      +++|+++ .+|..   +++|+.|++++|+++. .|.....++.|.+
T Consensus       311 L~~N~L~-~l~~~---~~~L~~L~L~~N~L~~-lp~~~~~L~~L~~  351 (353)
T d1jl5a_         311 ASFNHLA-EVPEL---PQNLKQLHVEYNPLRE-FPDIPESVEDLRM  351 (353)
T ss_dssp             CCSSCCS-CCCCC---CTTCCEEECCSSCCSS-CCCCCTTCCEEEC
T ss_pred             CCCCcCC-ccccc---cCCCCEEECcCCcCCC-CCccccccCeeEC
Confidence            9999988 45543   4689999999999885 4555556766654

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.73  E-value=3.1e-20  Score=172.77  Aligned_cols=375  Identities=20%  Similarity=0.158  Sum_probs=215.9

Q ss_pred             CCCcEEEcCCCcccccc-chhhccCCCCcEEeCCCCcCCCC----CcccccCCCCCcEEeCCCceecccC----ccccc-
Q 037302           19 PNLESIIIPYTLLSGRI-PSEIGALSKLEELALPYNSLTGT----IPAEIGSLRNLVELDLSNNILNGSI----PLEFG-   88 (408)
Q Consensus        19 ~~L~~L~l~~~~~~~~~-~~~~~~~~~L~~L~l~~~~~~~~----~~~~~~~~~~L~~L~l~~~~~~~~~----~~~~~-   88 (408)
                      ++|++|+++++.+++.. ...+..+++++.|.|.+|.+++.    +...+..+++|+.|++++|.+.+..    ...+. 
T Consensus         2 ~~l~~ld~~~~~i~~~~~~~l~~~l~~l~~L~L~~~~i~~~~~~~l~~~L~~~~~L~~LdLs~N~i~~~~~~~l~~~l~~   81 (460)
T d1z7xw1           2 LDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQT   81 (460)
T ss_dssp             EEEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCS
T ss_pred             CCCCEEEeeCCcCChHHHHHHHHhCCCCCEEEeCCCCCCHHHHHHHHHHHhcCCCCCEEECcCCcCChHHHHHHHHHHhc
Confidence            46889999988887542 34567788999999999987632    2344678889999999998876421    22222 


Q ss_pred             CCCCCceeecCCcccccc----CCCcCCCCCCCCEEEcCCCeecccCccccc-----CCCCCceEeccCCcccCc----C
Q 037302           89 NLKDLDALRLRGNKLDGL----IPSSIGNLTNLTHLDLSLNQLSGRLPQEVG-----NLKNLLSLFLDNNNLTGP----I  155 (408)
Q Consensus        89 ~l~~L~~L~l~~~~i~~~----~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~-----~l~~L~~L~l~~~~~~~~----~  155 (408)
                      ...+|++|++++|.++..    .+..+..+++|++|++++|.+.......+.     ..................    .
T Consensus        82 ~~~~L~~L~L~~n~it~~~~~~l~~~l~~~~~L~~L~L~~N~i~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~  161 (460)
T d1z7xw1          82 PSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPL  161 (460)
T ss_dssp             TTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHH
T ss_pred             CCCCCCEEECCCCCccccccccccchhhccccccccccccccchhhhhhhhhhcccccccccccccccccccchhhhccc
Confidence            235799999999887643    234567788999999999877533222221     112223333332222111    1


Q ss_pred             chhhccCCCCCEEEcCCCcCCCCCC----ccc-cCCCCCCEEEecCcccccc----cCcccccccccCeEEccCCcCCCC
Q 037302          156 PSTLYHLNQLSNLYLAYNNLVGPLP----KEV-GNMKNLDSLLLNRNSLTGP----IPSTIGYLNLGGKLDLSHNRLDSP  226 (408)
Q Consensus       156 ~~~~~~~~~L~~L~l~~~~~~~~~~----~~~-~~~~~L~~L~l~~~~~~~~----~~~~~~~~~~L~~l~l~~~~~~~~  226 (408)
                      ...+...+.++.+.++.+.......    ..+ ........+.+.++.....    ....+...+.++.+.+..+.....
T Consensus       162 ~~~l~~~~~~~~~~ls~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~n~~~~~  241 (460)
T d1z7xw1         162 ASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDV  241 (460)
T ss_dssp             HHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHHH
T ss_pred             ccccccccccccccccccccccccccccccccccccccccccccccccccchhhhcccccccccccccccchhhcccccc
Confidence            1223345667777776665421100    001 1123445566655543321    112234456677777766644211


Q ss_pred             -----CCcccCCCCCccEEEccCCcccccC----CccccCCCCCCEEeCCCCcccccCCc-----cccCCCCCcEEeCCC
Q 037302          227 -----IPPTIGNLTNLTSLDLSSNQLSGLL----PREVGNLKYLDSLSLDGNNLIGSIPP-----TIGYLTNLTSLNLGY  292 (408)
Q Consensus       227 -----~~~~l~~~~~L~~L~l~~~~~~~~~----~~~~~~~~~L~~L~l~~~~~~~~~~~-----~~~~~~~L~~L~l~~  292 (408)
                           ..........++.+++++|.+....    ...+...+.++.++++++.+.+....     .......|+.+++++
T Consensus       242 ~~~~~~~~~~~~~~~l~~l~l~~n~i~~~~~~~~~~~l~~~~~l~~l~l~~n~i~~~~~~~l~~~l~~~~~~L~~l~l~~  321 (460)
T d1z7xw1         242 GMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKS  321 (460)
T ss_dssp             HHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTT
T ss_pred             ccchhhcccccccccccccccccccccccccccccccccccccccccccccccccccccchhhccccccccccccccccc
Confidence                 1122334567788888877655321    22234567778888877766432111     112345778888888


Q ss_pred             CccccCCCcC----CcCCCCCcEEEcCCCccCCcCC----ccc-ccCCCccEEEcCCcccccc----CCcCCCCCCCccE
Q 037302          293 NQLSSSIPPE----LMNCSQLQNLVLSHNTLSGIVP----PEI-GNLTHLRQLDLSHNFINGT----IPSQLGYIPNISA  359 (408)
Q Consensus       293 ~~~~~~~~~~----~~~~~~L~~L~l~~~~~~~~~~----~~~-~~~~~L~~L~l~~~~~~~~----~~~~~~~~~~L~~  359 (408)
                      +.++......    +..+++|++|++++|.+.+...    ..+ ...+.|++|++++|.+++.    ++..+..+++|++
T Consensus       322 ~~l~~~~~~~l~~~~~~~~~L~~L~Ls~N~i~~~g~~~l~~~l~~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~  401 (460)
T d1z7xw1         322 CSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRE  401 (460)
T ss_dssp             SCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCCCCCE
T ss_pred             cchhhhhhhhcccccccccchhhhheeeecccCcccchhhhhhhcccCCCCEEECCCCCCChHHHHHHHHHHhcCCCCCE
Confidence            7766443222    2345678888888887653221    222 2345688888888877753    2334556678888


Q ss_pred             EeCCCCccCCcCCcc--------ccCCCeEEccCCccCCCCC
Q 037302          360 VDLSKNNLSGVVPAS--------VRIIPKLIVSENNLELENS  393 (408)
Q Consensus       360 L~l~~~~l~~~~~~~--------~~~l~~l~l~~n~~~~~~~  393 (408)
                      |++++|++.......        ...+++|++.+|++.....
T Consensus       402 L~Ls~N~i~~~g~~~l~~~l~~~~~~L~~l~l~~~~~~~~~~  443 (460)
T d1z7xw1         402 LDLSNNCLGDAGILQLVESVRQPGCLLEQLVLYDIYWSEEME  443 (460)
T ss_dssp             EECCSSSCCHHHHHHHHHHHTSTTCCCCEEECTTCCCCHHHH
T ss_pred             EECCCCcCCHHHHHHHHHHHHhCCCccCEEECCCCCCCHHHH
Confidence            888888776432211        2256788888887765443

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.72  E-value=1.5e-16  Score=132.96  Aligned_cols=172  Identities=26%  Similarity=0.361  Sum_probs=84.5

Q ss_pred             hccCCCCcEEeCCCCcCCCCCcccccCCCCCcEEeCCCceecccCcccccCCCCCceeecCCccccccCCCcCCCCCCCC
Q 037302           39 IGALSKLEELALPYNSLTGTIPAEIGSLRNLVELDLSNNILNGSIPLEFGNLKDLDALRLRGNKLDGLIPSSIGNLTNLT  118 (408)
Q Consensus        39 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~l~~l~~L~  118 (408)
                      .+.+.+|++|.+.+|.++..  ..+..+++|++|++++|.+.+..  .+..+++|+++++.++.++.+  ..+.++++|+
T Consensus        37 ~~~l~~L~~L~l~~~~i~~l--~~l~~l~~L~~L~ls~n~i~~~~--~l~~l~~l~~l~~~~n~~~~i--~~l~~l~~L~  110 (227)
T d1h6ua2          37 QADLDGITTLSAFGTGVTTI--EGVQYLNNLIGLELKDNQITDLA--PLKNLTKITELELSGNPLKNV--SAIAGLQSIK  110 (227)
T ss_dssp             HHHHHTCCEEECTTSCCCCC--TTGGGCTTCCEEECCSSCCCCCG--GGTTCCSCCEEECCSCCCSCC--GGGTTCTTCC
T ss_pred             HHHcCCcCEEECCCCCCCcc--hhHhcCCCCcEeecCCceeeccc--ccccccccccccccccccccc--cccccccccc
Confidence            34455666666666665533  33556666666666666555322  255566666666666555433  2355556666


Q ss_pred             EEEcCCCeecccCcccccCCCCCceEeccCCcccCcCchhhccCCCCCEEEcCCCcCCCCCCccccCCCCCCEEEecCcc
Q 037302          119 HLDLSLNQLSGRLPQEVGNLKNLLSLFLDNNNLTGPIPSTLYHLNQLSNLYLAYNNLVGPLPKEVGNMKNLDSLLLNRNS  198 (408)
Q Consensus       119 ~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~  198 (408)
                      .+.++++.....  ..+...+.++.+.++.+.+...  ..+..+++|+.+.+++|.+...  ..++.+++|+.|++++|.
T Consensus       111 ~l~l~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~--~~~~~~~~L~~L~l~~n~~~~~--~~l~~l~~L~~L~Ls~n~  184 (227)
T d1h6ua2         111 TLDLTSTQITDV--TPLAGLSNLQVLYLDLNQITNI--SPLAGLTNLQYLSIGNAQVSDL--TPLANLSKLTTLKADDNK  184 (227)
T ss_dssp             EEECTTSCCCCC--GGGTTCTTCCEEECCSSCCCCC--GGGGGCTTCCEEECCSSCCCCC--GGGTTCTTCCEEECCSSC
T ss_pred             cccccccccccc--chhccccchhhhhchhhhhchh--hhhccccccccccccccccccc--hhhcccccceecccCCCc
Confidence            666655544321  2334445555555555444321  2234455555555555544321  224445555555555544


Q ss_pred             cccccCcccccccccCeEEccCCcCC
Q 037302          199 LTGPIPSTIGYLNLGGKLDLSHNRLD  224 (408)
Q Consensus       199 ~~~~~~~~~~~~~~L~~l~l~~~~~~  224 (408)
                      +.+.  ..++.+++|++|++++|+++
T Consensus       185 l~~l--~~l~~l~~L~~L~Ls~N~lt  208 (227)
T d1h6ua2         185 ISDI--SPLASLPNLIEVHLKNNQIS  208 (227)
T ss_dssp             CCCC--GGGGGCTTCCEEECTTSCCC
T ss_pred             cCCC--hhhcCCCCCCEEECcCCcCC
Confidence            4321  12333444444444444433

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.71  E-value=1.7e-16  Score=132.62  Aligned_cols=187  Identities=29%  Similarity=0.373  Sum_probs=103.5

Q ss_pred             cCCCCCEEEcCCCcCCCCCCccccCCCCCCEEEecCcccccccCcccccccccCeEEccCCcCCCCCCcccCCCCCccEE
Q 037302          161 HLNQLSNLYLAYNNLVGPLPKEVGNMKNLDSLLLNRNSLTGPIPSTIGYLNLGGKLDLSHNRLDSPIPPTIGNLTNLTSL  240 (408)
Q Consensus       161 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~l~~~~~L~~L  240 (408)
                      .+.+|+.|++.+|.+...  ..+..+++|+.|++++|.+.+..  .+..++.++.+.++++.++..  ..+..+++|+.+
T Consensus        39 ~l~~L~~L~l~~~~i~~l--~~l~~l~~L~~L~ls~n~i~~~~--~l~~l~~l~~l~~~~n~~~~i--~~l~~l~~L~~l  112 (227)
T d1h6ua2          39 DLDGITTLSAFGTGVTTI--EGVQYLNNLIGLELKDNQITDLA--PLKNLTKITELELSGNPLKNV--SAIAGLQSIKTL  112 (227)
T ss_dssp             HHHTCCEEECTTSCCCCC--TTGGGCTTCCEEECCSSCCCCCG--GGTTCCSCCEEECCSCCCSCC--GGGTTCTTCCEE
T ss_pred             HcCCcCEEECCCCCCCcc--hhHhcCCCCcEeecCCceeeccc--ccccccccccccccccccccc--cccccccccccc
Confidence            344555555555554422  23445555555555555444221  244455555555555544322  234556666666


Q ss_pred             EccCCcccccCCccccCCCCCCEEeCCCCcccccCCccccCCCCCcEEeCCCCccccCCCcCCcCCCCCcEEEcCCCccC
Q 037302          241 DLSSNQLSGLLPREVGNLKYLDSLSLDGNNLIGSIPPTIGYLTNLTSLNLGYNQLSSSIPPELMNCSQLQNLVLSHNTLS  320 (408)
Q Consensus       241 ~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~  320 (408)
                      .++++.....  ..+...+.++.+.+.++.+...  ..+..+++|++|++++|.+...  ..+.++++|++|++++|+++
T Consensus       113 ~l~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~--~~~~~~~~L~~L~l~~n~~~~~--~~l~~l~~L~~L~Ls~n~l~  186 (227)
T d1h6ua2         113 DLTSTQITDV--TPLAGLSNLQVLYLDLNQITNI--SPLAGLTNLQYLSIGNAQVSDL--TPLANLSKLTTLKADDNKIS  186 (227)
T ss_dssp             ECTTSCCCCC--GGGTTCTTCCEEECCSSCCCCC--GGGGGCTTCCEEECCSSCCCCC--GGGTTCTTCCEEECCSSCCC
T ss_pred             cccccccccc--chhccccchhhhhchhhhhchh--hhhccccccccccccccccccc--hhhcccccceecccCCCccC
Confidence            6666554322  2344556666666666655422  2345566777777777666532  23556677777777777665


Q ss_pred             CcCCcccccCCCccEEEcCCccccccCCcCCCCCCCccEEeCC
Q 037302          321 GIVPPEIGNLTHLRQLDLSHNFINGTIPSQLGYIPNISAVDLS  363 (408)
Q Consensus       321 ~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~  363 (408)
                      +.  ..+..+++|++|++++|++++..+  +.++++|+.|+++
T Consensus       187 ~l--~~l~~l~~L~~L~Ls~N~lt~i~~--l~~l~~L~~L~ls  225 (227)
T d1h6ua2         187 DI--SPLASLPNLIEVHLKNNQISDVSP--LANTSNLFIVTLT  225 (227)
T ss_dssp             CC--GGGGGCTTCCEEECTTSCCCBCGG--GTTCTTCCEEEEE
T ss_pred             CC--hhhcCCCCCCEEECcCCcCCCCcc--cccCCCCCEEEee
Confidence            43  346666777777777777664432  5666777777664

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.70  E-value=5.3e-18  Score=146.72  Aligned_cols=214  Identities=21%  Similarity=0.213  Sum_probs=113.0

Q ss_pred             CCCCEEEecCcccccc-cCcccccccccCeEEccCCcCCCCCCcccCCCCCccEEEccCC-cccccCC-ccccCCCCCCE
Q 037302          187 KNLDSLLLNRNSLTGP-IPSTIGYLNLGGKLDLSHNRLDSPIPPTIGNLTNLTSLDLSSN-QLSGLLP-REVGNLKYLDS  263 (408)
Q Consensus       187 ~~L~~L~l~~~~~~~~-~~~~~~~~~~L~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~-~~~~~~~-~~~~~~~~L~~  263 (408)
                      .+|++|+++++.+... ....+..+++|++|.++++.+.+.....++.+++|++|++++| .+++... .....+++|++
T Consensus        46 ~~L~~LdLs~~~i~~~~l~~l~~~c~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~Ls~c~~itd~~l~~l~~~~~~L~~  125 (284)
T d2astb2          46 FRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDE  125 (284)
T ss_dssp             BCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCE
T ss_pred             CCCCEEECCCCccCHHHHHHHHHhCCCcccccccccCCCcHHHHHHhcCCCCcCccccccccccccccchhhHHHHhccc
Confidence            3455555555444321 2233445555555555555544333344555566666666665 3332211 12234566777


Q ss_pred             EeCCCCcc-ccc-CCccc-cCCCCCcEEeCCCCc--cccC-CCcCCcCCCCCcEEEcCCCc-cCCcCCcccccCCCccEE
Q 037302          264 LSLDGNNL-IGS-IPPTI-GYLTNLTSLNLGYNQ--LSSS-IPPELMNCSQLQNLVLSHNT-LSGIVPPEIGNLTHLRQL  336 (408)
Q Consensus       264 L~l~~~~~-~~~-~~~~~-~~~~~L~~L~l~~~~--~~~~-~~~~~~~~~~L~~L~l~~~~-~~~~~~~~~~~~~~L~~L  336 (408)
                      |++++|.. .+. ....+ ..+++|+.|+++++.  +++. ....+.++++|++|++++|. +++.....+..+++|++|
T Consensus       126 L~ls~c~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~i~~~~l~~l~~~~~~L~~L~L~~~~~itd~~~~~l~~~~~L~~L  205 (284)
T d2astb2         126 LNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHL  205 (284)
T ss_dssp             EECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEE
T ss_pred             cccccccccccccchhhhcccccccchhhhcccccccccccccccccccccccccccccccCCCchhhhhhcccCcCCEE
Confidence            77766532 211 11111 234667777776642  2221 11123456777777777763 554455566667777777


Q ss_pred             EcCCc-cccccCCcCCCCCCCccEEeCCCCccCC-cCCccccCCCeEEccCCccCCCCCCCcCCCCC
Q 037302          337 DLSHN-FINGTIPSQLGYIPNISAVDLSKNNLSG-VVPASVRIIPKLIVSENNLELENSTSSENAPP  401 (408)
Q Consensus       337 ~l~~~-~~~~~~~~~~~~~~~L~~L~l~~~~l~~-~~~~~~~~l~~l~l~~n~~~~~~~~~~~~~~~  401 (408)
                      ++++| .+++.....++.+++|+.|++++| +.. ..+.....+..|.+..+++++..+..+.+...
T Consensus       206 ~L~~C~~i~~~~l~~L~~~~~L~~L~l~~~-~~d~~l~~l~~~lp~L~i~~~~ls~~~~~~~~~~~~  271 (284)
T d2astb2         206 SLSRCYDIIPETLLELGEIPTLKTLQVFGI-VPDGTLQLLKEALPHLQINCSHFTTIARPTIGNKKN  271 (284)
T ss_dssp             ECTTCTTCCGGGGGGGGGCTTCCEEECTTS-SCTTCHHHHHHHSTTSEESCCCSCCTTCSSCSSTTC
T ss_pred             ECCCCCCCChHHHHHHhcCCCCCEEeeeCC-CCHHHHHHHHHhCccccccCccCCCCCCCccCcccc
Confidence            77776 455555555666777777777777 322 12222234555666677777666666665544

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.68  E-value=7.7e-20  Score=170.01  Aligned_cols=352  Identities=18%  Similarity=0.154  Sum_probs=229.9

Q ss_pred             CCCcEEeCCCCcCCCCC-cccccCCCCCcEEeCCCceeccc----CcccccCCCCCceeecCCccccccC----CCcCC-
Q 037302           43 SKLEELALPYNSLTGTI-PAEIGSLRNLVELDLSNNILNGS----IPLEFGNLKDLDALRLRGNKLDGLI----PSSIG-  112 (408)
Q Consensus        43 ~~L~~L~l~~~~~~~~~-~~~~~~~~~L~~L~l~~~~~~~~----~~~~~~~l~~L~~L~l~~~~i~~~~----~~~l~-  112 (408)
                      ++|++|+++++++++.. ...++.++++++|+|++|.+.+.    +..++..+++|++|++++|.++...    ...+. 
T Consensus         2 ~~l~~ld~~~~~i~~~~~~~l~~~l~~l~~L~L~~~~i~~~~~~~l~~~L~~~~~L~~LdLs~N~i~~~~~~~l~~~l~~   81 (460)
T d1z7xw1           2 LDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQT   81 (460)
T ss_dssp             EEEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCS
T ss_pred             CCCCEEEeeCCcCChHHHHHHHHhCCCCCEEEeCCCCCCHHHHHHHHHHHhcCCCCCEEECcCCcCChHHHHHHHHHHhc
Confidence            36899999999987532 33467789999999999988642    3455678999999999999875321    22232 


Q ss_pred             CCCCCCEEEcCCCeecccC----cccccCCCCCceEeccCCcccCcCchhhcc-----CCCCCEEEcCCCcCCCC----C
Q 037302          113 NLTNLTHLDLSLNQLSGRL----PQEVGNLKNLLSLFLDNNNLTGPIPSTLYH-----LNQLSNLYLAYNNLVGP----L  179 (408)
Q Consensus       113 ~l~~L~~L~l~~~~~~~~~----~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~-----~~~L~~L~l~~~~~~~~----~  179 (408)
                      ...+|++|++++|.+++..    +..+..+++|++|++++|.+.......+..     .................    .
T Consensus        82 ~~~~L~~L~L~~n~it~~~~~~l~~~l~~~~~L~~L~L~~N~i~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~  161 (460)
T d1z7xw1          82 PSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPL  161 (460)
T ss_dssp             TTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHH
T ss_pred             CCCCCCEEECCCCCccccccccccchhhccccccccccccccchhhhhhhhhhcccccccccccccccccccchhhhccc
Confidence            3458999999999886442    345667899999999999876432222211     12233333333222111    1


Q ss_pred             CccccCCCCCCEEEecCccccccc----Cccc-ccccccCeEEccCCcCCCCC----CcccCCCCCccEEEccCCccccc
Q 037302          180 PKEVGNMKNLDSLLLNRNSLTGPI----PSTI-GYLNLGGKLDLSHNRLDSPI----PPTIGNLTNLTSLDLSSNQLSGL  250 (408)
Q Consensus       180 ~~~~~~~~~L~~L~l~~~~~~~~~----~~~~-~~~~~L~~l~l~~~~~~~~~----~~~l~~~~~L~~L~l~~~~~~~~  250 (408)
                      ...+...+.++.+.++++......    ...+ ........+.+..+......    ...+...+.++.+.++++.....
T Consensus       162 ~~~l~~~~~~~~~~ls~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~n~~~~~  241 (460)
T d1z7xw1         162 ASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDV  241 (460)
T ss_dssp             HHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHHH
T ss_pred             ccccccccccccccccccccccccccccccccccccccccccccccccccchhhhcccccccccccccccchhhcccccc
Confidence            122344677888888877654211    1111 12234556777666543221    12234568899999999866432


Q ss_pred             -----CCccccCCCCCCEEeCCCCccccc----CCccccCCCCCcEEeCCCCccccCCCcC-----CcCCCCCcEEEcCC
Q 037302          251 -----LPREVGNLKYLDSLSLDGNNLIGS----IPPTIGYLTNLTSLNLGYNQLSSSIPPE-----LMNCSQLQNLVLSH  316 (408)
Q Consensus       251 -----~~~~~~~~~~L~~L~l~~~~~~~~----~~~~~~~~~~L~~L~l~~~~~~~~~~~~-----~~~~~~L~~L~l~~  316 (408)
                           ..........++.++++++.+...    ....+...+.++.+++++|.++......     ......|+.+.+++
T Consensus       242 ~~~~~~~~~~~~~~~l~~l~l~~n~i~~~~~~~~~~~l~~~~~l~~l~l~~n~i~~~~~~~l~~~l~~~~~~L~~l~l~~  321 (460)
T d1z7xw1         242 GMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKS  321 (460)
T ss_dssp             HHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTT
T ss_pred             ccchhhcccccccccccccccccccccccccccccccccccccccccccccccccccccchhhccccccccccccccccc
Confidence                 223334567899999999977533    2223456789999999999886432221     22346899999999


Q ss_pred             CccCCcCCc----ccccCCCccEEEcCCccccccC----CcCC-CCCCCccEEeCCCCccCCcC----Ccc---ccCCCe
Q 037302          317 NTLSGIVPP----EIGNLTHLRQLDLSHNFINGTI----PSQL-GYIPNISAVDLSKNNLSGVV----PAS---VRIIPK  380 (408)
Q Consensus       317 ~~~~~~~~~----~~~~~~~L~~L~l~~~~~~~~~----~~~~-~~~~~L~~L~l~~~~l~~~~----~~~---~~~l~~  380 (408)
                      |.+......    .+...++|++|++++|++++..    +..+ ...+.|+.|++++|+++...    ++.   ...+++
T Consensus       322 ~~l~~~~~~~l~~~~~~~~~L~~L~Ls~N~i~~~g~~~l~~~l~~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~  401 (460)
T d1z7xw1         322 CSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRE  401 (460)
T ss_dssp             SCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCCCCCE
T ss_pred             cchhhhhhhhcccccccccchhhhheeeecccCcccchhhhhhhcccCCCCEEECCCCCCChHHHHHHHHHHhcCCCCCE
Confidence            987644333    3345679999999999987542    2333 35678999999999997532    222   256889


Q ss_pred             EEccCCccCCCCCC
Q 037302          381 LIVSENNLELENST  394 (408)
Q Consensus       381 l~l~~n~~~~~~~~  394 (408)
                      |++++|+++..+..
T Consensus       402 L~Ls~N~i~~~g~~  415 (460)
T d1z7xw1         402 LDLSNNCLGDAGIL  415 (460)
T ss_dssp             EECCSSSCCHHHHH
T ss_pred             EECCCCcCCHHHHH
Confidence            99999999765443

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.67  E-value=1.2e-16  Score=129.81  Aligned_cols=173  Identities=23%  Similarity=0.266  Sum_probs=124.1

Q ss_pred             CeEEccCCcCCCCCCcccCCCCCccEEEccCCcccc-cCCccccCCCCCCEEeCCCCcccccCCccccCCCCCcEEeCCC
Q 037302          214 GKLDLSHNRLDSPIPPTIGNLTNLTSLDLSSNQLSG-LLPREVGNLKYLDSLSLDGNNLIGSIPPTIGYLTNLTSLNLGY  292 (408)
Q Consensus       214 ~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~-~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~  292 (408)
                      +.++.++++++. +|..+  .+++++|++++|.++. .....|..+++|+.|+++++.+.......+..+++|++|++++
T Consensus        11 ~~v~Cs~~~L~~-iP~~l--p~~l~~L~Ls~N~i~~~~~~~~f~~l~~L~~L~L~~N~i~~~~~~~~~~~~~L~~L~Ls~   87 (192)
T d1w8aa_          11 TTVDCTGRGLKE-IPRDI--PLHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGE   87 (192)
T ss_dssp             TEEECTTSCCSS-CCSCC--CTTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCS
T ss_pred             CEEEEeCCCcCc-cCCCC--CCCCCEEEeCCCCCcccccccccCCCceEeeeeccccccccccccccccccccceeeecc
Confidence            356666666653 33333  2578888888887764 4456667788888888888887766777777788888888888


Q ss_pred             CccccCCCcCCcCCCCCcEEEcCCCccCCcCCcccccCCCccEEEcCCccccccCCcCCCCCCCccEEeCCCCccCCcCC
Q 037302          293 NQLSSSIPPELMNCSQLQNLVLSHNTLSGIVPPEIGNLTHLRQLDLSHNFINGTIPSQLGYIPNISAVDLSKNNLSGVVP  372 (408)
Q Consensus       293 ~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~  372 (408)
                      |.+....+..|.++++|++|+|++|+++.+.+.+|..+++|+++++++|++... +........++...+..+.++...|
T Consensus        88 N~l~~l~~~~F~~l~~L~~L~L~~N~l~~i~~~~f~~l~~L~~l~L~~N~~~~~-~~~~~~~~~l~~~~l~~~~~~c~~p  166 (192)
T d1w8aa_          88 NKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCN-CHLAWFAEWLRKKSLNGGAARCGAP  166 (192)
T ss_dssp             CCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCCS-GGGHHHHHHHHHHCCSGGGCBBCSS
T ss_pred             ccccccCHHHHhCCCcccccccCCccccccCHHHhcCCcccccccccccccccc-cchHHHhhhhhhhcccCCCeEeCCC
Confidence            888877777788888888888888888877777788888888888888877632 2111112345666777777777777


Q ss_pred             ccccCCCeEEccCCccCC
Q 037302          373 ASVRIIPKLIVSENNLEL  390 (408)
Q Consensus       373 ~~~~~l~~l~l~~n~~~~  390 (408)
                      ..+.+++.++++.|.+..
T Consensus       167 ~~l~~~~l~~L~~n~l~C  184 (192)
T d1w8aa_         167 SKVRDVQIKDLPHSEFKC  184 (192)
T ss_dssp             TTTTTSBGGGSCTTTCCC
T ss_pred             hhhcCCEeeecCHhhCcC
Confidence            777777778888888764

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.66  E-value=2.7e-15  Score=126.55  Aligned_cols=198  Identities=15%  Similarity=0.083  Sum_probs=111.5

Q ss_pred             CCCEEEecCcccccccCcccccccccCeEEccCCcCCC-CCCcccCCCCCccEEEccC-CcccccCCccccCCCCCCEEe
Q 037302          188 NLDSLLLNRNSLTGPIPSTIGYLNLGGKLDLSHNRLDS-PIPPTIGNLTNLTSLDLSS-NQLSGLLPREVGNLKYLDSLS  265 (408)
Q Consensus       188 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~-~~~~~l~~~~~L~~L~l~~-~~~~~~~~~~~~~~~~L~~L~  265 (408)
                      ++++|++++|.+.......|..+++|++++++++.+.. ..+..+..++.++++.+.+ +.+.......+..+++|+.+.
T Consensus        30 ~l~~L~Ls~n~i~~l~~~~f~~l~~L~~L~ls~n~~~~~i~~~~f~~l~~l~~l~~~~~n~l~~~~~~~~~~l~~L~~l~  109 (242)
T d1xwdc1          30 NAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLL  109 (242)
T ss_dssp             CCSEEEEESCCCCEECTTTTTTCTTCCEEEEESCTTCCEECSSSEESCTTCCEEEEECCTTCCEECTTSEECCTTCCEEE
T ss_pred             CCCEEECcCCcCCccChhHhhccchhhhhhhccccccceeeccccccccccccccccccccccccccccccccccccccc
Confidence            44555555555443333344555555555555554432 2233455556666665543 244444445566666666666


Q ss_pred             CCCCcccccCC-ccccCCCCCcEEeCCCCccccCCCcCCcCC-CCCcEEEcCCCccCCcCCcccccCCCccEE-EcCCcc
Q 037302          266 LDGNNLIGSIP-PTIGYLTNLTSLNLGYNQLSSSIPPELMNC-SQLQNLVLSHNTLSGIVPPEIGNLTHLRQL-DLSHNF  342 (408)
Q Consensus       266 l~~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~-~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L-~l~~~~  342 (408)
                      +.++.+..... ......+.+..+...++.+.......+.++ ..++.+.++++++..+....+. .++++++ .+.+|+
T Consensus       110 l~~~~l~~~~~~~~~~~l~~l~~~~~~n~~l~~i~~~~~~~~~~~l~~L~l~~n~l~~i~~~~~~-~~~l~~~~~l~~n~  188 (242)
T d1xwdc1         110 ISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIHNCAFN-GTQLDELNLSDNNN  188 (242)
T ss_dssp             EESCCCCSCCCCTTTCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCCEECTTTTT-TCCEEEEECTTCTT
T ss_pred             cchhhhcccccccccccccccccccccccccccccccccccccccceeeeccccccccccccccc-chhhhccccccccc
Confidence            66665543221 122334455555556656655555555554 3677777777777655554444 3444444 456667


Q ss_pred             ccccCCcCCCCCCCccEEeCCCCccCCcCCccccCCCeEEccCC
Q 037302          343 INGTIPSQLGYIPNISAVDLSKNNLSGVVPASVRIIPKLIVSEN  386 (408)
Q Consensus       343 ~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~l~l~~n  386 (408)
                      +++..+..|.++++|+.|++++|+++.+.+..|.++..|...++
T Consensus       189 l~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~l~~  232 (242)
T d1xwdc1         189 LEELPNDVFHGASGPVILDISRTRIHSLPSYGLENLKKLRARST  232 (242)
T ss_dssp             CCCCCTTTTTTSCCCSEEECTTSCCCCCCSSSCTTCCEEESSSE
T ss_pred             cccccHHHhcCCCCCCEEECCCCcCCccCHHHHcCCcccccCcC
Confidence            77554556777888888888888887777777777776654433

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.65  E-value=8.2e-16  Score=129.82  Aligned_cols=200  Identities=18%  Similarity=0.136  Sum_probs=97.9

Q ss_pred             CCceEeccCCcccCcCchhhccCCCCCEEEcCCCcCCCC-CCccccCCCCCCEEEecCcccccccCcccccccccCeEEc
Q 037302          140 NLLSLFLDNNNLTGPIPSTLYHLNQLSNLYLAYNNLVGP-LPKEVGNMKNLDSLLLNRNSLTGPIPSTIGYLNLGGKLDL  218 (408)
Q Consensus       140 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~-~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l  218 (408)
                      ++++|+++++.++......|.++++|++|++++|.+... ....|..+++++++.+..+                     
T Consensus        30 ~l~~L~Ls~n~i~~l~~~~f~~l~~L~~L~ls~n~~~~~i~~~~f~~l~~l~~l~~~~~---------------------   88 (242)
T d1xwdc1          30 NAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKA---------------------   88 (242)
T ss_dssp             CCSEEEEESCCCCEECTTTTTTCTTCCEEEEESCTTCCEECSSSEESCTTCCEEEEECC---------------------
T ss_pred             CCCEEECcCCcCCccChhHhhccchhhhhhhccccccceeecccccccccccccccccc---------------------
Confidence            456666666655544344455556666666655544321 2233445555555554332                     


Q ss_pred             cCCcCCCCCCcccCCCCCccEEEccCCcccccCC-ccccCCCCCCEEeCCCCcccccCCccccCC-CCCcEEeCCCCccc
Q 037302          219 SHNRLDSPIPPTIGNLTNLTSLDLSSNQLSGLLP-REVGNLKYLDSLSLDGNNLIGSIPPTIGYL-TNLTSLNLGYNQLS  296 (408)
Q Consensus       219 ~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~-~~L~~L~l~~~~~~  296 (408)
                        +.+....+..+..+++|++++++++.+..... ..+.....+..+...++.+.......+..+ ..++.+++++|.++
T Consensus        89 --n~l~~~~~~~~~~l~~L~~l~l~~~~l~~~~~~~~~~~l~~l~~~~~~n~~l~~i~~~~~~~~~~~l~~L~l~~n~l~  166 (242)
T d1xwdc1          89 --NNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQ  166 (242)
T ss_dssp             --TTCCEECTTSEECCTTCCEEEEESCCCCSCCCCTTTCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCC
T ss_pred             --ccccccccccccccccccccccchhhhcccccccccccccccccccccccccccccccccccccccceeeeccccccc
Confidence              22222233334444455555555444432211 111222333333333333333333333333 35666666666666


Q ss_pred             cCCCcCCcCCCCCcEE-EcCCCccCCcCCcccccCCCccEEEcCCccccccCCcCCCCCCCccEEeCC
Q 037302          297 SSIPPELMNCSQLQNL-VLSHNTLSGIVPPEIGNLTHLRQLDLSHNFINGTIPSQLGYIPNISAVDLS  363 (408)
Q Consensus       297 ~~~~~~~~~~~~L~~L-~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~  363 (408)
                      ......+ +.+++.++ .+++|.++++....|.++++|++|++++|+++...+..+.++++|+.+++.
T Consensus       167 ~i~~~~~-~~~~l~~~~~l~~n~l~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~l~~~  233 (242)
T d1xwdc1         167 EIHNCAF-NGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSYGLENLKKLRARSTY  233 (242)
T ss_dssp             EECTTTT-TTCCEEEEECTTCTTCCCCCTTTTTTSCCCSEEECTTSCCCCCCSSSCTTCCEEESSSEE
T ss_pred             ccccccc-cchhhhccccccccccccccHHHhcCCCCCCEEECCCCcCCccCHHHHcCCcccccCcCC
Confidence            4433333 33444444 345556665555566777777777777777775545556666666655443

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.64  E-value=1.6e-15  Score=123.69  Aligned_cols=160  Identities=24%  Similarity=0.371  Sum_probs=102.3

Q ss_pred             CCCCccEEEccCCcccccCCccccCCCCCCEEeCCCCcccccCCccccCCCCCcEEeCCCCccccCCCcCCcCCCCCcEE
Q 037302          233 NLTNLTSLDLSSNQLSGLLPREVGNLKYLDSLSLDGNNLIGSIPPTIGYLTNLTSLNLGYNQLSSSIPPELMNCSQLQNL  312 (408)
Q Consensus       233 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L  312 (408)
                      .++++++|+++++.+.+.  ..++.+++|++|++++|.+.+..  .+..+++|++|++++|.+...  ..+.+++.|+.|
T Consensus        38 ~l~~l~~L~l~~~~i~~l--~~l~~l~nL~~L~Ls~N~l~~~~--~l~~l~~L~~L~l~~n~~~~~--~~l~~l~~L~~L  111 (199)
T d2omxa2          38 DLDQVTTLQADRLGIKSI--DGVEYLNNLTQINFSNNQLTDIT--PLKNLTKLVDILMNNNQIADI--TPLANLTNLTGL  111 (199)
T ss_dssp             HHTTCCEEECTTSCCCCC--TTGGGCTTCCEEECCSSCCCCCG--GGTTCTTCCEEECCSSCCCCC--GGGTTCTTCSEE
T ss_pred             HhcCCCEEECCCCCCCCc--cccccCCCcCcCccccccccCcc--cccCCcccccccccccccccc--cccccccccccc
Confidence            345666777777666532  23556677777777777665432  266677777777777766532  235667777777


Q ss_pred             EcCCCccCCcCCcccccCCCccEEEcCCccccccCCcCCCCCCCccEEeCCCCccCCcCC-ccccCCCeEEccCCccCCC
Q 037302          313 VLSHNTLSGIVPPEIGNLTHLRQLDLSHNFINGTIPSQLGYIPNISAVDLSKNNLSGVVP-ASVRIIPKLIVSENNLELE  391 (408)
Q Consensus       313 ~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~-~~~~~l~~l~l~~n~~~~~  391 (408)
                      ++++|.....  ..+..+++|+.+++++|++.. ++ .+..+++|+.|++.+|+++++.+ ..+.++++|++++|+++. 
T Consensus       112 ~l~~~~~~~~--~~~~~l~~L~~L~l~~n~l~~-~~-~l~~~~~L~~L~l~~n~l~~l~~l~~l~~L~~L~ls~N~i~~-  186 (199)
T d2omxa2         112 TLFNNQITDI--DPLKNLTNLNRLELSSNTISD-IS-ALSGLTSLQQLNFSSNQVTDLKPLANLTTLERLDISSNKVSD-  186 (199)
T ss_dssp             ECCSSCCCCC--GGGTTCTTCSEEECCSSCCCC-CG-GGTTCTTCSEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCC-
T ss_pred             cccccccccc--cccchhhhhHHhhhhhhhhcc-cc-cccccccccccccccccccCCccccCCCCCCEEECCCCCCCC-
Confidence            7777766532  346667777777777777653 22 46677777777777777776543 344566677777777754 


Q ss_pred             CCCCcCCCCCCCC
Q 037302          392 NSTSSENAPPPQA  404 (408)
Q Consensus       392 ~~~~~~~~~~~~~  404 (408)
                      +| .+.+|+.|+.
T Consensus       187 i~-~l~~L~~L~~  198 (199)
T d2omxa2         187 IS-VLAKLTNLES  198 (199)
T ss_dssp             CG-GGGGCTTCSE
T ss_pred             Cc-cccCCCCCCc
Confidence            33 4566666654

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.64  E-value=5.2e-15  Score=120.57  Aligned_cols=163  Identities=28%  Similarity=0.385  Sum_probs=101.6

Q ss_pred             ccCCCCcEEeCCCCcCCCCCcccccCCCCCcEEeCCCceecccCcccccCCCCCceeecCCccccccCCCcCCCCCCCCE
Q 037302           40 GALSKLEELALPYNSLTGTIPAEIGSLRNLVELDLSNNILNGSIPLEFGNLKDLDALRLRGNKLDGLIPSSIGNLTNLTH  119 (408)
Q Consensus        40 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~l~~l~~L~~  119 (408)
                      ..++++++|++.++.++..  ..+..+++|++|++++|++.+..+  +.++++|++|+++++.+..+  ..+.++++|+.
T Consensus        37 ~~l~~l~~L~l~~~~i~~l--~~l~~l~nL~~L~Ls~N~l~~~~~--l~~l~~L~~L~l~~n~~~~~--~~l~~l~~L~~  110 (199)
T d2omxa2          37 TDLDQVTTLQADRLGIKSI--DGVEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADI--TPLANLTNLTG  110 (199)
T ss_dssp             HHHTTCCEEECTTSCCCCC--TTGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCC--GGGTTCTTCSE
T ss_pred             HHhcCCCEEECCCCCCCCc--cccccCCCcCcCccccccccCccc--ccCCcccccccccccccccc--ccccccccccc
Confidence            3456677777777766533  345666777777777776653322  66677777777777665533  23666777777


Q ss_pred             EEcCCCeecccCcccccCCCCCceEeccCCcccCcCchhhccCCCCCEEEcCCCcCCCCCCccccCCCCCCEEEecCccc
Q 037302          120 LDLSLNQLSGRLPQEVGNLKNLLSLFLDNNNLTGPIPSTLYHLNQLSNLYLAYNNLVGPLPKEVGNMKNLDSLLLNRNSL  199 (408)
Q Consensus       120 L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~  199 (408)
                      ++++++.....  ..+..+++|+.++++++.+.. . ..+..+++++.+++.+|.+...  ..+..+++|+.|++++|.+
T Consensus       111 L~l~~~~~~~~--~~~~~l~~L~~L~l~~n~l~~-~-~~l~~~~~L~~L~l~~n~l~~l--~~l~~l~~L~~L~ls~N~i  184 (199)
T d2omxa2         111 LTLFNNQITDI--DPLKNLTNLNRLELSSNTISD-I-SALSGLTSLQQLNFSSNQVTDL--KPLANLTTLERLDISSNKV  184 (199)
T ss_dssp             EECCSSCCCCC--GGGTTCTTCSEEECCSSCCCC-C-GGGTTCTTCSEEECCSSCCCCC--GGGTTCTTCCEEECCSSCC
T ss_pred             ccccccccccc--cccchhhhhHHhhhhhhhhcc-c-ccccccccccccccccccccCC--ccccCCCCCCEEECCCCCC
Confidence            77776665432  345667777777777776652 2 3456677777777777766532  2366777777777777776


Q ss_pred             ccccCcccccccccCeE
Q 037302          200 TGPIPSTIGYLNLGGKL  216 (408)
Q Consensus       200 ~~~~~~~~~~~~~L~~l  216 (408)
                      ++.  ..++.+++|+.|
T Consensus       185 ~~i--~~l~~L~~L~~L  199 (199)
T d2omxa2         185 SDI--SVLAKLTNLESL  199 (199)
T ss_dssp             CCC--GGGGGCTTCSEE
T ss_pred             CCC--ccccCCCCCCcC
Confidence            542  235556666553

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.64  E-value=6.3e-15  Score=121.12  Aligned_cols=166  Identities=28%  Similarity=0.361  Sum_probs=108.0

Q ss_pred             cCCCCcEEeCCCCcCCCCCcccccCCCCCcEEeCCCceecccCcccccCCCCCceeecCCccccccCCCcCCCCCCCCEE
Q 037302           41 ALSKLEELALPYNSLTGTIPAEIGSLRNLVELDLSNNILNGSIPLEFGNLKDLDALRLRGNKLDGLIPSSIGNLTNLTHL  120 (408)
Q Consensus        41 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~l~~l~~L~~L  120 (408)
                      .+.+|++|++.++.++..  ..+..+++|++|++++|++.+..  .+..+++|++|++++|+++.+  ..+..+++|+.+
T Consensus        44 ~L~~L~~L~l~~~~i~~l--~~l~~l~~L~~L~L~~n~i~~l~--~~~~l~~L~~L~l~~n~i~~l--~~l~~l~~L~~L  117 (210)
T d1h6ta2          44 ELNSIDQIIANNSDIKSV--QGIQYLPNVTKLFLNGNKLTDIK--PLANLKNLGWLFLDENKVKDL--SSLKDLKKLKSL  117 (210)
T ss_dssp             HHHTCCEEECTTSCCCCC--TTGGGCTTCCEEECCSSCCCCCG--GGTTCTTCCEEECCSSCCCCG--GGGTTCTTCCEE
T ss_pred             HhcCccEEECcCCCCCCc--hhHhhCCCCCEEeCCCccccCcc--ccccCcccccccccccccccc--cccccccccccc
Confidence            345677777777766543  23566777777777777766432  245677777777777776644  246667777777


Q ss_pred             EcCCCeecccCcccccCCCCCceEeccCCcccCcCchhhccCCCCCEEEcCCCcCCCCCCccccCCCCCCEEEecCcccc
Q 037302          121 DLSLNQLSGRLPQEVGNLKNLLSLFLDNNNLTGPIPSTLYHLNQLSNLYLAYNNLVGPLPKEVGNMKNLDSLLLNRNSLT  200 (408)
Q Consensus       121 ~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~  200 (408)
                      ++.++.+..  ...+..++.++.++++++.++..  ..+..+++|+.+++++|.+...  ..+..+++|+.|++++|.+.
T Consensus       118 ~l~~~~~~~--~~~l~~l~~l~~l~~~~n~l~~~--~~~~~l~~L~~l~l~~n~l~~i--~~l~~l~~L~~L~Ls~N~i~  191 (210)
T d1h6ta2         118 SLEHNGISD--INGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDI--VPLAGLTKLQNLYLSKNHIS  191 (210)
T ss_dssp             ECTTSCCCC--CGGGGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCC--GGGTTCTTCCEEECCSSCCC
T ss_pred             ccccccccc--ccccccccccccccccccccccc--cccccccccccccccccccccc--ccccCCCCCCEEECCCCCCC
Confidence            777776642  23466677777777777766532  3455677777777777776542  23667777777777777766


Q ss_pred             cccCcccccccccCeEEccC
Q 037302          201 GPIPSTIGYLNLGGKLDLSH  220 (408)
Q Consensus       201 ~~~~~~~~~~~~L~~l~l~~  220 (408)
                      +.  ..+..+++|++|++++
T Consensus       192 ~l--~~l~~l~~L~~L~Ls~  209 (210)
T d1h6ta2         192 DL--RALAGLKNLDVLELFS  209 (210)
T ss_dssp             BC--GGGTTCTTCSEEEEEE
T ss_pred             CC--hhhcCCCCCCEEEccC
Confidence            42  2466777777777753

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.63  E-value=1e-15  Score=124.12  Aligned_cols=163  Identities=21%  Similarity=0.277  Sum_probs=136.4

Q ss_pred             CccEEEccCCcccccCCccccCCCCCCEEeCCCCcccc-cCCccccCCCCCcEEeCCCCccccCCCcCCcCCCCCcEEEc
Q 037302          236 NLTSLDLSSNQLSGLLPREVGNLKYLDSLSLDGNNLIG-SIPPTIGYLTNLTSLNLGYNQLSSSIPPELMNCSQLQNLVL  314 (408)
Q Consensus       236 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~-~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l  314 (408)
                      ..+.++.+++.++. .+..+  .+++++|+++++.+.. .....+..+++|++|++++|.+....+..+..+++|++|++
T Consensus         9 ~~~~v~Cs~~~L~~-iP~~l--p~~l~~L~Ls~N~i~~~~~~~~f~~l~~L~~L~L~~N~i~~~~~~~~~~~~~L~~L~L   85 (192)
T d1w8aa_           9 EGTTVDCTGRGLKE-IPRDI--PLHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQL   85 (192)
T ss_dssp             ETTEEECTTSCCSS-CCSCC--CTTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEEC
T ss_pred             cCCEEEEeCCCcCc-cCCCC--CCCCCEEEeCCCCCcccccccccCCCceEeeeeccccccccccccccccccccceeee
Confidence            34678888888874 44433  3689999999999975 45667889999999999999999888889999999999999


Q ss_pred             CCCccCCcCCcccccCCCccEEEcCCccccccCCcCCCCCCCccEEeCCCCccCCcCCc-c-ccCCCeEEccCCccCCCC
Q 037302          315 SHNTLSGIVPPEIGNLTHLRQLDLSHNFINGTIPSQLGYIPNISAVDLSKNNLSGVVPA-S-VRIIPKLIVSENNLELEN  392 (408)
Q Consensus       315 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~-~-~~~l~~l~l~~n~~~~~~  392 (408)
                      ++|++..+.+.+|.++++|++|++++|+++...+.+|..+++|+.|++++|++....+. . ...++...+..+.+++..
T Consensus        86 s~N~l~~l~~~~F~~l~~L~~L~L~~N~l~~i~~~~f~~l~~L~~l~L~~N~~~~~~~~~~~~~~l~~~~l~~~~~~c~~  165 (192)
T d1w8aa_          86 GENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCNCHLAWFAEWLRKKSLNGGAARCGA  165 (192)
T ss_dssp             CSCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCCSGGGHHHHHHHHHHCCSGGGCBBCS
T ss_pred             ccccccccCHHHHhCCCcccccccCCccccccCHHHhcCCcccccccccccccccccchHHHhhhhhhhcccCCCeEeCC
Confidence            99999988888999999999999999999988888999999999999999999765431 1 223557788889999888


Q ss_pred             CCCcCCCCC
Q 037302          393 STSSENAPP  401 (408)
Q Consensus       393 ~~~~~~~~~  401 (408)
                      |..+.+++-
T Consensus       166 p~~l~~~~l  174 (192)
T d1w8aa_         166 PSKVRDVQI  174 (192)
T ss_dssp             STTTTTSBG
T ss_pred             ChhhcCCEe
Confidence            988776543

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.63  E-value=6.3e-17  Score=139.83  Aligned_cols=215  Identities=19%  Similarity=0.201  Sum_probs=110.3

Q ss_pred             CCCCceEeccCCcccCc-CchhhccCCCCCEEEcCCCcCCCCCCccccCCCCCCEEEecCcccccccCcccccccccCeE
Q 037302          138 LKNLLSLFLDNNNLTGP-IPSTLYHLNQLSNLYLAYNNLVGPLPKEVGNMKNLDSLLLNRNSLTGPIPSTIGYLNLGGKL  216 (408)
Q Consensus       138 l~~L~~L~l~~~~~~~~-~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l  216 (408)
                      ..+|++|+++++.+... +...+.++++|++|.+++|.+.+.....+..+++|++|++++|.                  
T Consensus        45 ~~~L~~LdLs~~~i~~~~l~~l~~~c~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~Ls~c~------------------  106 (284)
T d2astb2          45 PFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCS------------------  106 (284)
T ss_dssp             CBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCB------------------
T ss_pred             CCCCCEEECCCCccCHHHHHHHHHhCCCcccccccccCCCcHHHHHHhcCCCCcCccccccc------------------
Confidence            34556666655554322 22234445556666555555443333344445555555555432                  


Q ss_pred             EccCCcCCCCC-CcccCCCCCccEEEccCCc-ccccC-Cccc-cCCCCCCEEeCCCCc--cccc-CCccccCCCCCcEEe
Q 037302          217 DLSHNRLDSPI-PPTIGNLTNLTSLDLSSNQ-LSGLL-PREV-GNLKYLDSLSLDGNN--LIGS-IPPTIGYLTNLTSLN  289 (408)
Q Consensus       217 ~l~~~~~~~~~-~~~l~~~~~L~~L~l~~~~-~~~~~-~~~~-~~~~~L~~L~l~~~~--~~~~-~~~~~~~~~~L~~L~  289 (408)
                           .+++.. ......+++|++|++++|. +++.. ...+ ..++.|+.|+++++.  +.+. ......++++|++|+
T Consensus       107 -----~itd~~l~~l~~~~~~L~~L~ls~c~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~i~~~~l~~l~~~~~~L~~L~  181 (284)
T d2astb2         107 -----GFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLD  181 (284)
T ss_dssp             -----SCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEE
T ss_pred             -----cccccccchhhHHHHhccccccccccccccccchhhhcccccccchhhhcccccccccccccccccccccccccc
Confidence                 111100 0112235566666666652 22111 1112 234567777776653  2211 222334567777777


Q ss_pred             CCCCc-cccCCCcCCcCCCCCcEEEcCCC-ccCCcCCcccccCCCccEEEcCCcccccc-CCcCCCCCCCccEEeCCCCc
Q 037302          290 LGYNQ-LSSSIPPELMNCSQLQNLVLSHN-TLSGIVPPEIGNLTHLRQLDLSHNFINGT-IPSQLGYIPNISAVDLSKNN  366 (408)
Q Consensus       290 l~~~~-~~~~~~~~~~~~~~L~~L~l~~~-~~~~~~~~~~~~~~~L~~L~l~~~~~~~~-~~~~~~~~~~L~~L~l~~~~  366 (408)
                      +++|. +++.....+.++++|++|++++| .+++.....+..+++|+.|++++| +++. .......+|+|+   +..++
T Consensus       182 L~~~~~itd~~~~~l~~~~~L~~L~L~~C~~i~~~~l~~L~~~~~L~~L~l~~~-~~d~~l~~l~~~lp~L~---i~~~~  257 (284)
T d2astb2         182 LSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI-VPDGTLQLLKEALPHLQ---INCSH  257 (284)
T ss_dssp             CTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS-SCTTCHHHHHHHSTTSE---ESCCC
T ss_pred             cccccCCCchhhhhhcccCcCCEEECCCCCCCChHHHHHHhcCCCCCEEeeeCC-CCHHHHHHHHHhCcccc---ccCcc
Confidence            77654 55445555666777777777776 355444556667778888888777 3322 122223456655   35566


Q ss_pred             cCCcCCccccCCC
Q 037302          367 LSGVVPASVRIIP  379 (408)
Q Consensus       367 l~~~~~~~~~~l~  379 (408)
                      ++...+..+++-+
T Consensus       258 ls~~~~~~~~~~~  270 (284)
T d2astb2         258 FTTIARPTIGNKK  270 (284)
T ss_dssp             SCCTTCSSCSSTT
T ss_pred             CCCCCCCccCccc
Confidence            6666655555443

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.62  E-value=6.9e-15  Score=120.89  Aligned_cols=163  Identities=31%  Similarity=0.422  Sum_probs=72.3

Q ss_pred             CCCCCEEEecCcccccccCcccccccccCeEEccCCcCCCCCCcccCCCCCccEEEccCCcccccCCccccCCCCCCEEe
Q 037302          186 MKNLDSLLLNRNSLTGPIPSTIGYLNLGGKLDLSHNRLDSPIPPTIGNLTNLTSLDLSSNQLSGLLPREVGNLKYLDSLS  265 (408)
Q Consensus       186 ~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~  265 (408)
                      +.+|+.|++.++.+.+..  .+..+++|++|++++|.+++..  .++.+++|+.|++++|.+++.  ..+..+++|+.|+
T Consensus        45 L~~L~~L~l~~~~i~~l~--~l~~l~~L~~L~L~~n~i~~l~--~~~~l~~L~~L~l~~n~i~~l--~~l~~l~~L~~L~  118 (210)
T d1h6ta2          45 LNSIDQIIANNSDIKSVQ--GIQYLPNVTKLFLNGNKLTDIK--PLANLKNLGWLFLDENKVKDL--SSLKDLKKLKSLS  118 (210)
T ss_dssp             HHTCCEEECTTSCCCCCT--TGGGCTTCCEEECCSSCCCCCG--GGTTCTTCCEEECCSSCCCCG--GGGTTCTTCCEEE
T ss_pred             hcCccEEECcCCCCCCch--hHhhCCCCCEEeCCCccccCcc--ccccCcccccccccccccccc--ccccccccccccc
Confidence            344555555555544221  2344555555555555444321  234445555555555544421  1244445555555


Q ss_pred             CCCCcccccCCccccCCCCCcEEeCCCCccccCCCcCCcCCCCCcEEEcCCCccCCcCCcccccCCCccEEEcCCccccc
Q 037302          266 LDGNNLIGSIPPTIGYLTNLTSLNLGYNQLSSSIPPELMNCSQLQNLVLSHNTLSGIVPPEIGNLTHLRQLDLSHNFING  345 (408)
Q Consensus       266 l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~  345 (408)
                      +.++.....  ..+..++.++.+++++|.+++.  ..+..+++|+.+++++|.+.+.  ..+.++++|++|++++|++++
T Consensus       119 l~~~~~~~~--~~l~~l~~l~~l~~~~n~l~~~--~~~~~l~~L~~l~l~~n~l~~i--~~l~~l~~L~~L~Ls~N~i~~  192 (210)
T d1h6ta2         119 LEHNGISDI--NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDI--VPLAGLTKLQNLYLSKNHISD  192 (210)
T ss_dssp             CTTSCCCCC--GGGGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCC--GGGTTCTTCCEEECCSSCCCB
T ss_pred             ccccccccc--cccccccccccccccccccccc--cccccccccccccccccccccc--ccccCCCCCCEEECCCCCCCC
Confidence            555444321  2334444555555555444421  2233444555555555544422  124444455555555554442


Q ss_pred             cCCcCCCCCCCccEEeC
Q 037302          346 TIPSQLGYIPNISAVDL  362 (408)
Q Consensus       346 ~~~~~~~~~~~L~~L~l  362 (408)
                       ++ .+.++++|+.|++
T Consensus       193 -l~-~l~~l~~L~~L~L  207 (210)
T d1h6ta2         193 -LR-ALAGLKNLDVLEL  207 (210)
T ss_dssp             -CG-GGTTCTTCSEEEE
T ss_pred             -Ch-hhcCCCCCCEEEc
Confidence             22 2444445554444

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.48  E-value=3.8e-14  Score=110.82  Aligned_cols=125  Identities=22%  Similarity=0.180  Sum_probs=57.1

Q ss_pred             CCCCcEEeCCCCcCCCCCcccccCCCCCcEEeCCCceecccCcccccCCCCCceeecCCccccccCCCcCCCCCCCCEEE
Q 037302           42 LSKLEELALPYNSLTGTIPAEIGSLRNLVELDLSNNILNGSIPLEFGNLKDLDALRLRGNKLDGLIPSSIGNLTNLTHLD  121 (408)
Q Consensus        42 ~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~l~~l~~L~~L~  121 (408)
                      +.++|+|++++|+++.+ +..+..+++|++|++++|.+...  ..+..+++|++|++++|.++.+.+..+..+++|++|+
T Consensus        17 ~~~lr~L~L~~n~I~~i-~~~~~~l~~L~~L~Ls~N~i~~l--~~~~~l~~L~~L~ls~N~i~~l~~~~~~~l~~L~~L~   93 (162)
T d1a9na_          17 AVRDRELDLRGYKIPVI-ENLGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELI   93 (162)
T ss_dssp             TTSCEEEECTTSCCCSC-CCGGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCEEE
T ss_pred             cCcCcEEECCCCCCCcc-CccccccccCCEEECCCCCCCcc--CCcccCcchhhhhcccccccCCCccccccccccccce
Confidence            33444444444444422 22333444444444444444321  1244445555555555554444333344455555555


Q ss_pred             cCCCeecccC-cccccCCCCCceEeccCCcccCcC---chhhccCCCCCEEE
Q 037302          122 LSLNQLSGRL-PQEVGNLKNLLSLFLDNNNLTGPI---PSTLYHLNQLSNLY  169 (408)
Q Consensus       122 l~~~~~~~~~-~~~~~~l~~L~~L~l~~~~~~~~~---~~~~~~~~~L~~L~  169 (408)
                      +++|.+.... ...+..+++|+++++.+|.+....   ...+..+|+|+.|+
T Consensus        94 L~~N~i~~~~~l~~l~~l~~L~~L~l~~N~i~~~~~~r~~~i~~lp~L~~LD  145 (162)
T d1a9na_          94 LTNNSLVELGDLDPLASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLD  145 (162)
T ss_dssp             CCSCCCCCGGGGGGGGGCTTCCEEECCSSGGGGSTTHHHHHHHHCTTCSEET
T ss_pred             eccccccccccccccccccccchhhcCCCccccccchHHHHHHHCCCcCeeC
Confidence            5555444221 123445555666666655554221   12344566666654

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.48  E-value=3.3e-14  Score=111.14  Aligned_cols=126  Identities=17%  Similarity=0.212  Sum_probs=67.3

Q ss_pred             CCCCccEEEccCCcccccCCccccCCCCCCEEeCCCCcccccCCccccCCCCCcEEeCCCCccccCCCcCCcCCCCCcEE
Q 037302          233 NLTNLTSLDLSSNQLSGLLPREVGNLKYLDSLSLDGNNLIGSIPPTIGYLTNLTSLNLGYNQLSSSIPPELMNCSQLQNL  312 (408)
Q Consensus       233 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L  312 (408)
                      .+.++++|++++|.++.. +..+..+++|+.|++++|.+...  ..+..+++|++|++++|.++...+..+..+++|++|
T Consensus        16 n~~~lr~L~L~~n~I~~i-~~~~~~l~~L~~L~Ls~N~i~~l--~~~~~l~~L~~L~ls~N~i~~l~~~~~~~l~~L~~L   92 (162)
T d1a9na_          16 NAVRDRELDLRGYKIPVI-ENLGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTEL   92 (162)
T ss_dssp             CTTSCEEEECTTSCCCSC-CCGGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCEE
T ss_pred             CcCcCcEEECCCCCCCcc-CccccccccCCEEECCCCCCCcc--CCcccCcchhhhhcccccccCCCccccccccccccc
Confidence            344556666666655532 33334455666666666655432  234555666666666666654444444456666666


Q ss_pred             EcCCCccCCcCC-cccccCCCccEEEcCCccccccCC---cCCCCCCCccEEe
Q 037302          313 VLSHNTLSGIVP-PEIGNLTHLRQLDLSHNFINGTIP---SQLGYIPNISAVD  361 (408)
Q Consensus       313 ~l~~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~~~~---~~~~~~~~L~~L~  361 (408)
                      ++++|++.+... ..+..+++|+++++++|++++...   ..++.+|+|+.|+
T Consensus        93 ~L~~N~i~~~~~l~~l~~l~~L~~L~l~~N~i~~~~~~r~~~i~~lp~L~~LD  145 (162)
T d1a9na_          93 ILTNNSLVELGDLDPLASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLD  145 (162)
T ss_dssp             ECCSCCCCCGGGGGGGGGCTTCCEEECCSSGGGGSTTHHHHHHHHCTTCSEET
T ss_pred             eeccccccccccccccccccccchhhcCCCccccccchHHHHHHHCCCcCeeC
Confidence            666666553322 345556666666666666653211   1244556666554

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=99.44  E-value=5.8e-15  Score=131.34  Aligned_cols=249  Identities=17%  Similarity=0.174  Sum_probs=139.3

Q ss_pred             cCCCCCCCCEEEcCCCeecccC----cccccCCCCCceEeccCCcccCc----------CchhhccCCCCCEEEcCCCcC
Q 037302          110 SIGNLTNLTHLDLSLNQLSGRL----PQEVGNLKNLLSLFLDNNNLTGP----------IPSTLYHLNQLSNLYLAYNNL  175 (408)
Q Consensus       110 ~l~~l~~L~~L~l~~~~~~~~~----~~~~~~l~~L~~L~l~~~~~~~~----------~~~~~~~~~~L~~L~l~~~~~  175 (408)
                      .+.....+++|++++|.+....    ...+...+.|+.+++.++.....          +...+..+++|+.|++++|.+
T Consensus        26 ~L~~~~~l~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~l~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~L~~L~L~~n~i  105 (344)
T d2ca6a1          26 VLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAF  105 (344)
T ss_dssp             HHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCC
T ss_pred             HHhhCCCCCEEECcCCcCCHHHHHHHHHHHHhCCCCCEEECCCCcccccccccchHHHHHHHHHhhCCCccccccccccc
Confidence            3555778888888888775332    23345678888888876543211          122344567777777777766


Q ss_pred             CCCCC----ccccCCCCCCEEEecCcccccccCcccccccccCeEEccCCcCCCCCCcccCCCCCccEEEccCCcccccC
Q 037302          176 VGPLP----KEVGNMKNLDSLLLNRNSLTGPIPSTIGYLNLGGKLDLSHNRLDSPIPPTIGNLTNLTSLDLSSNQLSGLL  251 (408)
Q Consensus       176 ~~~~~----~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~  251 (408)
                      .....    ..+...++|++|++++|.+.......+.  ..+..+...         ......+.|+.+.++++.+.+..
T Consensus       106 ~~~~~~~l~~~l~~~~~L~~L~l~~n~l~~~~~~~l~--~~l~~~~~~---------~~~~~~~~L~~l~l~~n~i~~~~  174 (344)
T d2ca6a1         106 GPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIA--RALQELAVN---------KKAKNAPPLRSIICGRNRLENGS  174 (344)
T ss_dssp             CTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHH--HHHHHHHHH---------HHHHTCCCCCEEECCSSCCTGGG
T ss_pred             ccccccchhhhhcccccchheeccccccccccccccc--ccccccccc---------cccccCcccceeecccccccccc
Confidence            54322    2233456777777776654321111110  000000000         00122355666777666554322


Q ss_pred             C----ccccCCCCCCEEeCCCCccccc-----CCccccCCCCCcEEeCCCCccccC----CCcCCcCCCCCcEEEcCCCc
Q 037302          252 P----REVGNLKYLDSLSLDGNNLIGS-----IPPTIGYLTNLTSLNLGYNQLSSS----IPPELMNCSQLQNLVLSHNT  318 (408)
Q Consensus       252 ~----~~~~~~~~L~~L~l~~~~~~~~-----~~~~~~~~~~L~~L~l~~~~~~~~----~~~~~~~~~~L~~L~l~~~~  318 (408)
                      .    ..+..++.|++|++++|.+...     ....+..+++|+.|++++|.++..    ....+..+++|++|++++|.
T Consensus       175 ~~~l~~~l~~~~~L~~L~L~~n~i~~~g~~~~l~~~l~~~~~L~~L~Ls~N~i~~~g~~~L~~~l~~~~~L~~L~Ls~n~  254 (344)
T d2ca6a1         175 MKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCL  254 (344)
T ss_dssp             HHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCC
T ss_pred             cccccchhhhhhhhcccccccccccccccccchhhhhcchhhhcccccccccccccccccccccccccccchhhhhhcCc
Confidence            2    2234556777777777766432     223455677788888887776532    22345567788888888887


Q ss_pred             cCCcCCcc----cc--cCCCccEEEcCCccccccC----CcCCC-CCCCccEEeCCCCccCC
Q 037302          319 LSGIVPPE----IG--NLTHLRQLDLSHNFINGTI----PSQLG-YIPNISAVDLSKNNLSG  369 (408)
Q Consensus       319 ~~~~~~~~----~~--~~~~L~~L~l~~~~~~~~~----~~~~~-~~~~L~~L~l~~~~l~~  369 (408)
                      +.+.....    +.  ..+.|++|++++|++++..    ...+. ++++|+.|++++|++..
T Consensus       255 i~~~g~~~l~~~l~~~~~~~L~~L~ls~N~i~~~~~~~l~~~l~~~~~~L~~L~l~~N~~~~  316 (344)
T d2ca6a1         255 LSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSE  316 (344)
T ss_dssp             CCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCT
T ss_pred             cCchhhHHHHHHhhhccCCCCCEEECCCCcCChHHHHHHHHHHHccCCCCCEEECCCCcCCC
Confidence            65432222    22  2356888888888776432    22332 46778888888887753

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=99.40  E-value=2.2e-14  Score=127.55  Aligned_cols=243  Identities=20%  Similarity=0.171  Sum_probs=130.2

Q ss_pred             CcccccCCCCCceeecCCcccccc----CCCcCCCCCCCCEEEcCCCeecc---c-------CcccccCCCCCceEeccC
Q 037302           83 IPLEFGNLKDLDALRLRGNKLDGL----IPSSIGNLTNLTHLDLSLNQLSG---R-------LPQEVGNLKNLLSLFLDN  148 (408)
Q Consensus        83 ~~~~~~~l~~L~~L~l~~~~i~~~----~~~~l~~l~~L~~L~l~~~~~~~---~-------~~~~~~~l~~L~~L~l~~  148 (408)
                      ....+.+...++.|++++|.+...    ....+...++|+.++++++....   .       ....+...++|++|++++
T Consensus        23 l~~~L~~~~~l~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~l~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~L~~L~L~~  102 (344)
T d2ca6a1          23 VFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSD  102 (344)
T ss_dssp             TSHHHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCS
T ss_pred             HHHHHhhCCCCCEEECcCCcCCHHHHHHHHHHHHhCCCCCEEECCCCcccccccccchHHHHHHHHHhhCCCcccccccc
Confidence            445567789999999999987532    23457778999999998764321   1       223455689999999999


Q ss_pred             CcccCcCc----hhhccCCCCCEEEcCCCcCCCCCCcc-------------ccCCCCCCEEEecCccccccc----Cccc
Q 037302          149 NNLTGPIP----STLYHLNQLSNLYLAYNNLVGPLPKE-------------VGNMKNLDSLLLNRNSLTGPI----PSTI  207 (408)
Q Consensus       149 ~~~~~~~~----~~~~~~~~L~~L~l~~~~~~~~~~~~-------------~~~~~~L~~L~l~~~~~~~~~----~~~~  207 (408)
                      |.+.....    ..+..+++|++|++++|.+.......             ....+.|+.+.++++.+.+..    ...+
T Consensus       103 n~i~~~~~~~l~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~~~~~~~~~~L~~l~l~~n~i~~~~~~~l~~~l  182 (344)
T d2ca6a1         103 NAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTF  182 (344)
T ss_dssp             CCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHH
T ss_pred             cccccccccchhhhhcccccchheecccccccccccccccccccccccccccccCcccceeecccccccccccccccchh
Confidence            98775433    33456899999999998763211001             123456666666665543211    1122


Q ss_pred             ccccccCeEEccCCcCCCCCCcccCCCCCccEEEccCCcccccCCccccCCCCCCEEeCCCCccccc----CCccccCCC
Q 037302          208 GYLNLGGKLDLSHNRLDSPIPPTIGNLTNLTSLDLSSNQLSGLLPREVGNLKYLDSLSLDGNNLIGS----IPPTIGYLT  283 (408)
Q Consensus       208 ~~~~~L~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~----~~~~~~~~~  283 (408)
                      ..++.++.+++++|.+.....                   .......+..+++|+.|++++|.+...    +...+..++
T Consensus       183 ~~~~~L~~L~L~~n~i~~~g~-------------------~~~l~~~l~~~~~L~~L~Ls~N~i~~~g~~~L~~~l~~~~  243 (344)
T d2ca6a1         183 QSHRLLHTVKMVQNGIRPEGI-------------------EHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWP  243 (344)
T ss_dssp             HHCTTCCEEECCSSCCCHHHH-------------------HHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCT
T ss_pred             hhhhhhccccccccccccccc-------------------ccchhhhhcchhhhcccccccccccccccccccccccccc
Confidence            334445555555444332100                   000112233344555555555443221    122334455


Q ss_pred             CCcEEeCCCCccccCCCcC----Cc--CCCCCcEEEcCCCccCCcC----Ccccc-cCCCccEEEcCCcccc
Q 037302          284 NLTSLNLGYNQLSSSIPPE----LM--NCSQLQNLVLSHNTLSGIV----PPEIG-NLTHLRQLDLSHNFIN  344 (408)
Q Consensus       284 ~L~~L~l~~~~~~~~~~~~----~~--~~~~L~~L~l~~~~~~~~~----~~~~~-~~~~L~~L~l~~~~~~  344 (408)
                      +|++|++++|.+++.....    +.  ..+.|++|++++|.+....    ...+. +++.|+.|++++|.+.
T Consensus       244 ~L~~L~Ls~n~i~~~g~~~l~~~l~~~~~~~L~~L~ls~N~i~~~~~~~l~~~l~~~~~~L~~L~l~~N~~~  315 (344)
T d2ca6a1         244 NLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFS  315 (344)
T ss_dssp             TCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSC
T ss_pred             cchhhhhhcCccCchhhHHHHHHhhhccCCCCCEEECCCCcCChHHHHHHHHHHHccCCCCCEEECCCCcCC
Confidence            5555555555544321111    11  1245666666666554221    11221 3456666666666654

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.37  E-value=2.9e-12  Score=94.94  Aligned_cols=77  Identities=27%  Similarity=0.367  Sum_probs=34.2

Q ss_pred             EEEcCCCccccccchhhccCCCCcEEeCCCCcCCCCCcccccCCCCCcEEeCCCceecccCcccccCCCCCceeecCCcc
Q 037302           23 SIIIPYTLLSGRIPSEIGALSKLEELALPYNSLTGTIPAEIGSLRNLVELDLSNNILNGSIPLEFGNLKDLDALRLRGNK  102 (408)
Q Consensus        23 ~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~  102 (408)
                      +|+++++.+.. ++ .+..+++|++|++++|.++ .++..+..+++|++|++++|.+.. .+ .+..+++|+++++++|+
T Consensus         2 ~L~Ls~n~l~~-l~-~l~~l~~L~~L~ls~N~l~-~lp~~~~~l~~L~~L~l~~N~i~~-l~-~~~~l~~L~~L~l~~N~   76 (124)
T d1dcea3           2 VLHLAHKDLTV-LC-HLEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALEN-VD-GVANLPRLQELLLCNNR   76 (124)
T ss_dssp             EEECTTSCCSS-CC-CGGGGTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCC-CG-GGTTCSSCCEEECCSSC
T ss_pred             EEEcCCCCCCC-Cc-ccccCCCCCEEECCCCccC-cchhhhhhhhcccccccccccccc-cC-ccccccccCeEECCCCc
Confidence            45555555442 12 2444555555555555444 223334444444555544444442 12 23444444444444444


Q ss_pred             cc
Q 037302          103 LD  104 (408)
Q Consensus       103 i~  104 (408)
                      +.
T Consensus        77 i~   78 (124)
T d1dcea3          77 LQ   78 (124)
T ss_dssp             CC
T ss_pred             cC
Confidence            43

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.35  E-value=3.1e-12  Score=94.84  Aligned_cols=85  Identities=27%  Similarity=0.357  Sum_probs=32.3

Q ss_pred             cCCCCCCEEeCCCCcccccCCccccCCCCCcEEeCCCCccccCCCcCCcCCCCCcEEEcCCCccCCcCC-cccccCCCcc
Q 037302          256 GNLKYLDSLSLDGNNLIGSIPPTIGYLTNLTSLNLGYNQLSSSIPPELMNCSQLQNLVLSHNTLSGIVP-PEIGNLTHLR  334 (408)
Q Consensus       256 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~-~~~~~~~~L~  334 (408)
                      ..+++|++|++++|.+.. .+..+..+++|++|++++|.++..  ..+.++++|++|++++|++.+... ..+..+++|+
T Consensus        17 ~~l~~L~~L~ls~N~l~~-lp~~~~~l~~L~~L~l~~N~i~~l--~~~~~l~~L~~L~l~~N~i~~~~~~~~l~~~~~L~   93 (124)
T d1dcea3          17 EQLLLVTHLDLSHNRLRA-LPPALAALRCLEVLQASDNALENV--DGVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLV   93 (124)
T ss_dssp             GGGTTCCEEECCSSCCCC-CCGGGGGCTTCCEEECCSSCCCCC--GGGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCC
T ss_pred             ccCCCCCEEECCCCccCc-chhhhhhhhccccccccccccccc--CccccccccCeEECCCCccCCCCCchhhcCCCCCC
Confidence            334444444444444432 222333344444444444444321  123334444444444444332211 2333334444


Q ss_pred             EEEcCCccc
Q 037302          335 QLDLSHNFI  343 (408)
Q Consensus       335 ~L~l~~~~~  343 (408)
                      .+++++|++
T Consensus        94 ~L~l~~N~i  102 (124)
T d1dcea3          94 LLNLQGNSL  102 (124)
T ss_dssp             EEECTTSGG
T ss_pred             EEECCCCcC
Confidence            444444433

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=99.26  E-value=7.8e-14  Score=112.97  Aligned_cols=139  Identities=22%  Similarity=0.265  Sum_probs=88.3

Q ss_pred             cccccccCCCCCCcEEEcCCCc-cccccchhhccCCCCcEEeCCCCcCCCCCcccccCCCCCcEEeCCCceecccCcccc
Q 037302            9 ELSQLNFTCFPNLESIIIPYTL-LSGRIPSEIGALSKLEELALPYNSLTGTIPAEIGSLRNLVELDLSNNILNGSIPLEF   87 (408)
Q Consensus         9 ~~~~~~~~~~~~L~~L~l~~~~-~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~   87 (408)
                      .|+.........++.+++.+.. -....+..+..+++|++|++++|.++..  ..+..+++|+.|++++|.+. .++..+
T Consensus        13 ~~~~~~~~~~~~~~~~~l~~~~~~i~~l~~sl~~L~~L~~L~Ls~n~I~~i--~~l~~l~~L~~L~Ls~N~i~-~i~~~~   89 (198)
T d1m9la_          13 IFEERKSVVATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEKI--SSLSGMENLRILSLGRNLIK-KIENLD   89 (198)
T ss_dssp             HHHHTTCCCCTTCSCEECCBCCTTCCCCHHHHHHTTTCCEEECSEEEESCC--CCHHHHTTCCEEECCEEEEC-SCSSHH
T ss_pred             HHHHHcCCcccccceeeeecccCchhhhhhHHhcccccceeECcccCCCCc--ccccCCccccChhhcccccc-cccccc
Confidence            3444445555666677776432 1224456677788888888888877643  34677778888888888776 334444


Q ss_pred             cCCCCCceeecCCccccccCCCcCCCCCCCCEEEcCCCeecccC-cccccCCCCCceEeccCCccc
Q 037302           88 GNLKDLDALRLRGNKLDGLIPSSIGNLTNLTHLDLSLNQLSGRL-PQEVGNLKNLLSLFLDNNNLT  152 (408)
Q Consensus        88 ~~l~~L~~L~l~~~~i~~~~~~~l~~l~~L~~L~l~~~~~~~~~-~~~~~~l~~L~~L~l~~~~~~  152 (408)
                      ..+++|++|++++|.++.+  ..+..+++|++|++++|.+.... ...+..+++|+.|++++|.+.
T Consensus        90 ~~~~~L~~L~l~~N~i~~l--~~~~~l~~L~~L~L~~N~i~~~~~~~~l~~l~~L~~L~L~~N~l~  153 (198)
T d1m9la_          90 AVADTLEELWISYNQIASL--SGIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLY  153 (198)
T ss_dssp             HHHHHCCEEECSEEECCCH--HHHHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSSHHH
T ss_pred             ccccccccccccccccccc--ccccccccccccccccchhccccccccccCCCccceeecCCCccc
Confidence            4456777777777776644  23556677777777777765332 134566777777777776654

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.21  E-value=7.6e-11  Score=91.01  Aligned_cols=139  Identities=18%  Similarity=0.115  Sum_probs=93.6

Q ss_pred             CCCEEeCCCCcccccCCccccCCCCCcEEeCCCC-ccccCCCcCCcCCCCCcEEEcCCCccCCcCCcccccCCCccEEEc
Q 037302          260 YLDSLSLDGNNLIGSIPPTIGYLTNLTSLNLGYN-QLSSSIPPELMNCSQLQNLVLSHNTLSGIVPPEIGNLTHLRQLDL  338 (408)
Q Consensus       260 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~-~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l  338 (408)
                      ..+.++..+....+ .+..+...++|++|+++++ .++...+..|.++++|+.|++++|+++.+.+.+|..+++|++|++
T Consensus         9 ~~~~l~c~~~~~~~-~p~~l~~l~~l~~L~l~~n~~l~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L   87 (156)
T d2ifga3           9 GSSGLRCTRDGALD-SLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNL   87 (156)
T ss_dssp             SSSCEECCSSCCCT-TTTTSCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEEC
T ss_pred             CCCeEEecCCCCcc-CcccccCccccCeeecCCCccccccCchhhccccccCcceeeccccCCcccccccccccccceec
Confidence            34455666555542 3444566778888888765 477666677888889999999999888777888888999999999


Q ss_pred             CCccccccCCcCCCCCCCccEEeCCCCccCCcC-Cccc---cCCCeEEccCCccCCCCCCCcCCCC
Q 037302          339 SHNFINGTIPSQLGYIPNISAVDLSKNNLSGVV-PASV---RIIPKLIVSENNLELENSTSSENAP  400 (408)
Q Consensus       339 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~-~~~~---~~l~~l~l~~n~~~~~~~~~~~~~~  400 (408)
                      ++|+++...+..+.. .+|+.|++++|++.-.- ...+   .......+..++++...|..+.+.|
T Consensus        88 s~N~l~~l~~~~~~~-~~l~~L~L~~Np~~C~C~~~~l~~~~~~~~~~~~~~~~~C~~p~~l~~~p  152 (156)
T d2ifga3          88 SFNALESLSWKTVQG-LSLQELVLSGNPLHCSCALRWLQRWEEEGLGGVPEQKLQCHGQGPLAHMP  152 (156)
T ss_dssp             CSSCCSCCCSTTTCS-CCCCEEECCSSCCCCCGGGHHHHHHHHTTCSSCGGGCCCCSSSSCSSCCC
T ss_pred             cCCCCcccChhhhcc-ccccccccCCCcccCCchHHHHHHHHHhccCccCcCCcEECcChHHCcCC
Confidence            999988554455544 46899999999885211 0001   1112334455667766776666554

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.20  E-value=4.7e-11  Score=92.25  Aligned_cols=108  Identities=19%  Similarity=0.257  Sum_probs=93.1

Q ss_pred             CCCCCcEEeCCCCccccCCCcCCcCCCCCcEEEcCCC-ccCCcCCcccccCCCccEEEcCCccccccCCcCCCCCCCccE
Q 037302          281 YLTNLTSLNLGYNQLSSSIPPELMNCSQLQNLVLSHN-TLSGIVPPEIGNLTHLRQLDLSHNFINGTIPSQLGYIPNISA  359 (408)
Q Consensus       281 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~-~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~  359 (408)
                      .+...+.++.+++... ..+..+..+++|++|.+.++ .++.+...+|.++++|+.|++++|+++...+.+|..+++|+.
T Consensus         6 ~c~~~~~l~c~~~~~~-~~p~~l~~l~~l~~L~l~~n~~l~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~   84 (156)
T d2ifga3           6 CPHGSSGLRCTRDGAL-DSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSR   84 (156)
T ss_dssp             CCSSSSCEECCSSCCC-TTTTTSCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCE
T ss_pred             CcCCCCeEEecCCCCc-cCcccccCccccCeeecCCCccccccCchhhccccccCcceeeccccCCcccccccccccccc
Confidence            3455677888888887 45667888999999999876 488777788999999999999999999888889999999999


Q ss_pred             EeCCCCccCCcCCccccC--CCeEEccCCccC
Q 037302          360 VDLSKNNLSGVVPASVRI--IPKLIVSENNLE  389 (408)
Q Consensus       360 L~l~~~~l~~~~~~~~~~--l~~l~l~~n~~~  389 (408)
                      |++++|+++.+.+..+..  +++|++++|++.
T Consensus        85 L~Ls~N~l~~l~~~~~~~~~l~~L~L~~Np~~  116 (156)
T d2ifga3          85 LNLSFNALESLSWKTVQGLSLQELVLSGNPLH  116 (156)
T ss_dssp             EECCSSCCSCCCSTTTCSCCCCEEECCSSCCC
T ss_pred             eeccCCCCcccChhhhccccccccccCCCccc
Confidence            999999999888877774  559999999985

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=99.07  E-value=7.1e-13  Score=107.18  Aligned_cols=111  Identities=20%  Similarity=0.211  Sum_probs=91.5

Q ss_pred             cccCCCCCCcEEEcCCCccccccchhhccCCCCcEEeCCCCcCCCCCcccccCCCCCcEEeCCCceecccCcccccCCCC
Q 037302           13 LNFTCFPNLESIIIPYTLLSGRIPSEIGALSKLEELALPYNSLTGTIPAEIGSLRNLVELDLSNNILNGSIPLEFGNLKD   92 (408)
Q Consensus        13 ~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~   92 (408)
                      .++..+++|++|+++++.+.. ++ .+..+++|++|++++|.++. ++..+..+++|+.|++++|.+...  ..+..+++
T Consensus        42 ~sl~~L~~L~~L~Ls~n~I~~-i~-~l~~l~~L~~L~Ls~N~i~~-i~~~~~~~~~L~~L~l~~N~i~~l--~~~~~l~~  116 (198)
T d1m9la_          42 ATLSTLKACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIKK-IENLDAVADTLEELWISYNQIASL--SGIEKLVN  116 (198)
T ss_dssp             HHHHHTTTCCEEECSEEEESC-CC-CHHHHTTCCEEECCEEEECS-CSSHHHHHHHCCEEECSEEECCCH--HHHHHHHH
T ss_pred             hHHhcccccceeECcccCCCC-cc-cccCCccccChhhccccccc-cccccccccccccccccccccccc--cccccccc
Confidence            468889999999999999874 33 58899999999999999874 344455567899999999998743  34778999


Q ss_pred             CceeecCCccccccCC-CcCCCCCCCCEEEcCCCeec
Q 037302           93 LDALRLRGNKLDGLIP-SSIGNLTNLTHLDLSLNQLS  128 (408)
Q Consensus        93 L~~L~l~~~~i~~~~~-~~l~~l~~L~~L~l~~~~~~  128 (408)
                      |+.|++++|.++.... ..+..+++|+.|++++|.+.
T Consensus       117 L~~L~L~~N~i~~~~~~~~l~~l~~L~~L~L~~N~l~  153 (198)
T d1m9la_         117 LRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLY  153 (198)
T ss_dssp             SSEEEESEEECCCHHHHHHHTTTTTCSEEEECSSHHH
T ss_pred             ccccccccchhccccccccccCCCccceeecCCCccc
Confidence            9999999999875532 46889999999999999775

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.05  E-value=1.6e-07  Score=72.50  Aligned_cols=65  Identities=32%  Similarity=0.338  Sum_probs=33.6

Q ss_pred             cCCCCCceeecCCccccccCC--CcCCCCCCCCEEEcCCCeecccCcccccCCCCCceEeccCCccc
Q 037302           88 GNLKDLDALRLRGNKLDGLIP--SSIGNLTNLTHLDLSLNQLSGRLPQEVGNLKNLLSLFLDNNNLT  152 (408)
Q Consensus        88 ~~l~~L~~L~l~~~~i~~~~~--~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~  152 (408)
                      ..+++|++|++++|+++.+.+  ..+..+++|+.|++++|.+.+...-.+.....|+.+++.+|.+.
T Consensus        62 ~~~~~L~~L~Ls~N~i~~l~~~~~~~~~l~~L~~L~Ls~N~i~~l~~l~~l~~~~L~~L~L~~Npl~  128 (162)
T d1koha1          62 ENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLKLEELWLDGNSLS  128 (162)
T ss_dssp             HHCTTCCCCCCCSSCCCCCSGGGTHHHHSTTCCCCCCTTSCCCCGGGHHHHTTCCCSSCCCTTSTTS
T ss_pred             HhCCCCCEeeCCCccccCCchhHHHHhhCCcccccccccCccccchhhhhhhccccceeecCCCCcC
Confidence            456666666666666654421  22344556666666666555332222223344556666655554

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.98  E-value=5.7e-07  Score=69.23  Aligned_cols=81  Identities=25%  Similarity=0.194  Sum_probs=39.8

Q ss_pred             CCCCCcEEeCCCCccccCCC--cCCcCCCCCcEEEcCCCccCCcCCcccccCCCccEEEcCCccccccCCc-------CC
Q 037302          281 YLTNLTSLNLGYNQLSSSIP--PELMNCSQLQNLVLSHNTLSGIVPPEIGNLTHLRQLDLSHNFINGTIPS-------QL  351 (408)
Q Consensus       281 ~~~~L~~L~l~~~~~~~~~~--~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~-------~~  351 (408)
                      .++.|++|++++|.++....  ..+..+++|+.|++++|.+.+.....+.....|+++++++|++......       .+
T Consensus        63 ~~~~L~~L~Ls~N~i~~l~~~~~~~~~l~~L~~L~Ls~N~i~~l~~l~~l~~~~L~~L~L~~Npl~~~~~~~~~y~~~i~  142 (162)
T d1koha1          63 NIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLKLEELWLDGNSLSDTFRDQSTYISAIR  142 (162)
T ss_dssp             HCTTCCCCCCCSSCCCCCSGGGTHHHHSTTCCCCCCTTSCCCCGGGHHHHTTCCCSSCCCTTSTTSSSSSSHHHHHHHHH
T ss_pred             hCCCCCEeeCCCccccCCchhHHHHhhCCcccccccccCccccchhhhhhhccccceeecCCCCcCcCcccchhHHHHHH
Confidence            44555555555555553211  2233455666666666655543332333344566666666666533221       23


Q ss_pred             CCCCCccEEe
Q 037302          352 GYIPNISAVD  361 (408)
Q Consensus       352 ~~~~~L~~L~  361 (408)
                      +.+|+|+.|+
T Consensus       143 ~~~P~L~~LD  152 (162)
T d1koha1         143 ERFPKLLRLD  152 (162)
T ss_dssp             TTSTTCCEET
T ss_pred             HHCCCCCEEC
Confidence            4456666553

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=97.79  E-value=7.2e-06  Score=63.16  Aligned_cols=65  Identities=15%  Similarity=0.196  Sum_probs=34.7

Q ss_pred             CCCCCCcEEEcCCC-ccccc----cchhhccCCCCcEEeCCCCcCCCC----CcccccCCCCCcEEeCCCceec
Q 037302           16 TCFPNLESIIIPYT-LLSGR----IPSEIGALSKLEELALPYNSLTGT----IPAEIGSLRNLVELDLSNNILN   80 (408)
Q Consensus        16 ~~~~~L~~L~l~~~-~~~~~----~~~~~~~~~~L~~L~l~~~~~~~~----~~~~~~~~~~L~~L~l~~~~~~   80 (408)
                      .+.|+|++|+|+++ .+...    +...+...++|++|++++|.+.+.    +...+...+.|+.|++++|.+.
T Consensus        12 ~n~~~L~~L~L~~~~~i~~~~~~~l~~~L~~n~~L~~L~Ls~n~l~~~~~~~la~~L~~n~~L~~L~L~~n~i~   85 (167)
T d1pgva_          12 EDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLT   85 (167)
T ss_dssp             TTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCC
T ss_pred             hCCCCCcEEEeCCCCCCCHHHHHHHHHHHhhCCccceeeccccccchhHHHHHhhhhhhcccccceeeehhhcc
Confidence            34577777777754 34322    223455566677777776665422    1122334455666666665554

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=97.77  E-value=3.8e-06  Score=64.80  Aligned_cols=63  Identities=17%  Similarity=0.193  Sum_probs=26.4

Q ss_pred             cCCCCCCEEeCCCCccccc----CCccccCCCCCcEEeCCCCccccCCC----cCCcCCCCCcEEEcCCCc
Q 037302          256 GNLKYLDSLSLDGNNLIGS----IPPTIGYLTNLTSLNLGYNQLSSSIP----PELMNCSQLQNLVLSHNT  318 (408)
Q Consensus       256 ~~~~~L~~L~l~~~~~~~~----~~~~~~~~~~L~~L~l~~~~~~~~~~----~~~~~~~~L~~L~l~~~~  318 (408)
                      ...+.|++|++++|.+.+.    ....+...+.|++|++++|.++....    ..+...+.|++|++++++
T Consensus        41 ~~n~~L~~L~Ls~n~l~~~~~~~la~~L~~n~~L~~L~L~~n~i~~~g~~~l~~aL~~n~sL~~L~l~~n~  111 (167)
T d1pgva_          41 CNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARLLRSTLVTQSIVEFKADNQR  111 (167)
T ss_dssp             TTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHHHHHTTTTCCCSEEECCCCS
T ss_pred             hhCCccceeeccccccchhHHHHHhhhhhhcccccceeeehhhcchHHHHHHHHHHHhCCcCCEEECCCCc
Confidence            3344555555555544322    11122334455555555554443211    123334445555554443

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=97.21  E-value=2.8e-05  Score=59.67  Aligned_cols=73  Identities=10%  Similarity=0.109  Sum_probs=37.0

Q ss_pred             ccccccccCCCCCCcEEEcCCC-ccccc----cchhhccCCCCcEEeCCCCcCCCCCc----ccccCCCCCcEEeCCCce
Q 037302            8 AELSQLNFTCFPNLESIIIPYT-LLSGR----IPSEIGALSKLEELALPYNSLTGTIP----AEIGSLRNLVELDLSNNI   78 (408)
Q Consensus         8 ~~~~~~~~~~~~~L~~L~l~~~-~~~~~----~~~~~~~~~~L~~L~l~~~~~~~~~~----~~~~~~~~L~~L~l~~~~   78 (408)
                      .++=.....+.|.|++|++++. .+...    +..++...++|++|++++|.+.....    ..+...+.++.++++++.
T Consensus         6 ~~~l~~~~~~~~~L~~L~L~~~~~i~~~~~~~l~~al~~n~~L~~L~Ls~n~l~~~~~~~L~~~l~~~~~l~~l~l~~~~   85 (166)
T d1io0a_           6 EETLKRIQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNF   85 (166)
T ss_dssp             HHHHHHHHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSC
T ss_pred             HHHHHHHHhcCCCCcEEEcCCCCCCCHHHHHHHHHHHhcCCccCeeeccCCcccHHHHHHHHHHHhhcccchhhhhcccc
Confidence            3333344456677777777653 34322    22334556666667776665542211    223344555555555554


Q ss_pred             ec
Q 037302           79 LN   80 (408)
Q Consensus        79 ~~   80 (408)
                      +.
T Consensus        86 ~~   87 (166)
T d1io0a_          86 IS   87 (166)
T ss_dssp             CC
T ss_pred             cc
Confidence            43

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=97.01  E-value=7.6e-05  Score=57.16  Aligned_cols=14  Identities=21%  Similarity=0.399  Sum_probs=6.2

Q ss_pred             CCCCCEEeCCCCcc
Q 037302          258 LKYLDSLSLDGNNL  271 (408)
Q Consensus       258 ~~~L~~L~l~~~~~  271 (408)
                      .++|++|++++|.+
T Consensus        45 n~~L~~L~Ls~n~l   58 (166)
T d1io0a_          45 NTYVKKFSIVGTRS   58 (166)
T ss_dssp             CCSCCEEECTTSCC
T ss_pred             CCccCeeeccCCcc
Confidence            34444444444443