Citrus Sinensis ID: 037304

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------
Protein Sequence
FTAVVVRRNYLFVLDRKFVPVEALDEPRGLQVVAYCMLLFYLKLCCLYLSVFPVHFEISTKQLYQLWIAEGFIPNNNEATAERYLEQLINAGFVDAGKRSDRGRINTGFIPGRCSPALLTVAFEGEFVISPIMDQEVKLWENVKRFTAHGNLNDFAFLDHFDSFLHSLLHLTSGSHYLNPTYCEKICKMFKFLRVLDLGSLVLIRYPFEIENLFLLRYLHLNIPSLKSLPSSLLNSLLNLYTLDKPFSYIDHTVDEF
Secondary Structure (PSIPRED)
ccHHHHHHHHHHHHHcccccccccccHHHHHHcccccccccHHHHHccccccccccccccHHHHHHHHHHcccccccccHHHHHHHHHHHccccccEEcccccEEcEEEEcHHHHHHHHHHHccccEEEEEcccccccccccEEEEEEEcccccccccccccccccEEEEEccccccccHHHHHHHcccccEEEEEEccccccccccccccccccccEEccccccccccccccccccccccEEEccccccccccccc
Secondary Structure Prediction (SSPRO)
cccHHHHHHHHHHHcHHHcccccHHHHHHHHHccHHcccHHHHHHEEEEEEccccccEcHHHHHHHHHHHccccccHHHHHHHHHHHHHHHccEEEEcccccccEEEEEHHHHHHHHHHHHHHHccEEEEEcccccccccccEEEEEEEcccccccccccccccEEEEEEEccccccccHHHHHHHHHcccEEEEEEccccccHHccHHHHHHHHHHHccccccccccccHHHHHHHHHHcEEcccccccccccccc
Coil and Loop (DISEMBL)
FTAVVVRRNYLFvldrkfvpvealdeprglQVVAYCMLLFYLKLCCLYLSVFPVHFEISTKQLYQLWIAegfipnnneATAERYLEQLINAgfvdagkrsdrgrintgfipgrcspalltvafegefvispimDQEVKLWENVKRftahgnlndfafLDHFDSFLHSLLHltsgshylnptyCEKICKMFKFLRVLDLGSLVLIRYPFEIENLFLLRYLHlnipslkslpSSLLNSLLNlytldkpfsyidhtvdef
Flexible Loop (DISEMBL)
ftavvvrrnylfvldrkfvpvealdeprgLQVVAYCMLLFYLKLCCLYLSVFPVHFEISTKQLYQLWIAEGFIPNNNEATAERYLEQLINAGfvdagkrsdRGRINTGFIPGRCSPALLTVAFEGEFVISPIMDQEVKLWENVKRFTAHGNLNDFAFLDHFDSFLHSLLHLTSGSHYLNPTYCEKICKMFKFLRVLDLGSLVLIRYPFEIENLFLLRYLHLNIPSLKSLPSSLLNSLLNLYtldkpfsyiDHTVDEF
Low Complexity Region (SEG)
FTAVVVRRNYLFVLDRKFVPVEALDEPRGLQVVAycmllfylklcclylSVFPVHFEISTKQLYQLWIAEGFIPNNNEATAERYLEQLINAGFVDAGKRSDRGRINTGFIPGRCSPALLTVAFEGEFVISPIMDQEVKLWENVKRFTAHGNLNDFAfldhfdsflhsllhlTSGSHYLNPTYCEKICKMFKFLRVLDLGSLVLIRYPFEIENLFLLRYLHlnipslkslpssllnsllnlYTLDKPFSYIDHTVDEF
Disordered region (IsUnstruct)
**AVVVRRNYLFVLDRKFVPVEALDEPRGLQVVAYCMLLFYLKLCCLYLSVFPVHFEISTKQLYQLWIAEGFIPNNNEATAERYLEQLINAGFVDAGKRSDRGRINTGFIPGRCSPALLTVAFEGEFVISPIMDQEVKLWENVKRFTAHGNLNDFAFLDHFDSFLHSLLHLTSGSHYLNPTYCEKICKMFKFLRVLDLGSLVLIRYPFEIENLFLLRYLHLNIPSLKSLPSSLLNSLLNLYTLDKPFSYIDH*****
Disordered Region (DISOPRED)
FTAVVVRRNYLFVLDRKFV**EALDEPRGLQVVAYCMLLFYLKLCCLYLSVFPVHFEISTKQLYQLWIAEGFIPNNNEATAERYLEQLINAGFVDAGKRSDRGRINTGFIPGRCSPALLTVAFEGEFVISPIMDQ**KLWENVKRFTAHGNLNDFAF**HFDSFLHSLLHLTSGSHYLNPTYCEKICKMFKFLRVLDLGSLVLIRYPFEIENLFLLRYLHLNIPSLKSLPSSLLNSLLNLYTLDKPFSYIDHTVDEF
Disordered Region (DISEMBL)
FTAVVVRRNYLFVLDRKFVPVEALDEPRGLQVVAYCMLLFYLKLCCLYLSVFPVHFEISTKQLYQLWIAEGFIPNNNEATAERYLEQLINAGFVDAGKRSDRGRINTGFIPGRCSPALLTVAFEGEFVISPIMDQEVKLWENVKRFTAHGNLNDFAFLDHFDSFLHSLLHLTSGSHYLNPTYCEKICKMFKFLRVLDLGSLVLIRYPFEIENLFLLRYLHLNIPSLKSLPSSLLNSLLNLYTLDKPFSYIDHTVDEF
Disordered Region (DISPRO)
FTAVVVRRNYLFVLDRKFVPVEALDEPRGLQVVAYCMLLFYLKLCCLYLSVFPVHFEISTKQLYQLWIAEGFIPNNNEATAERYLEQLINAGFVDAGKRSDRGRINTGFIPGRCSPALLTVAFEGEFVISPIMDQEVKLWENVKRFTAHGNLNDFAFLDHFDSFLHSLLHLTSGSHYLNPTYCEKICKMFKFLRVLDLGSLVLIRYPFEIENLFLLRYLHLNIPSLKSLPSSLLNSLLNLYTLDKPFSYIDHT****
Transmembrane Helix (TMHMM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
FTAVVVRRNYLFVLDRKFVPVEALDEPRGLQVVAYCMLLFYLKLCCLYLSVFPVHFEISTKQLYQLWIAEGFIPNNNEATAERYLEQLINAGFVDAGKRSDRGRINTGFIPGRCSPALLTVAFEGEFVISPIMDQEVKLWENVKRFTAHGNLNDFAFLDHFDSFLHSLLHLTSGSHYLNPTYCEKICKMFKFLRVLDLGSLVLIRYPFEIENLFLLRYLHLNIPSLKSLPSSLLNSLLNLYTLDKPFSYIDHTVDEF
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	257	2.2.26 [Sep-21-2011]
Q9STE5	847	Putative disease resistan	yes	no	0.805	0.244	0.309	1e-11
Q9STE7	847	Putative disease resistan	no	no	0.774	0.234	0.306	3e-11
Q9M667	835	Disease resistance protei	no	no	0.785	0.241	0.292	7e-11
Q6L3Z7	1317	Putative late blight resi	N/A	no	0.793	0.154	0.309	2e-09
Q6L403	1312	Putative late blight resi	N/A	no	0.793	0.155	0.309	3e-09
Q6L3Z4	1348	Putative late blight resi	N/A	no	0.805	0.153	0.304	6e-08
Q6L400	1284	Putative late blight resi	N/A	no	0.789	0.158	0.308	1e-07
Q6L3X3	1202	Putative late blight resi	N/A	no	0.785	0.168	0.308	2e-07
Q6L439	1244	Putative late blight resi	N/A	no	0.797	0.164	0.327	4e-07
Q6L3N7	1292	Putative late blight resi	N/A	no	0.821	0.163	0.305	1e-06

>sp|Q9STE5|R13L2_ARATH Putative disease resistance RPP13-like protein 2 OS=Arabidopsis thaliana GN=RPP13L2 PE=3 SV=1

 Score = 70.1 bits (170), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 70/226 (30%), Positives = 105/226 (46%), Gaps = 19/226 (8%)

Query: 42  LKLCCLYLSVFPVHFEISTKQLYQLWIAEGFIPNNNEATAER----YLEQLINAGFVDAG 97
           LKLC LYLSVFP  +E+  ++L QL +AEGFI  + E T E     Y+E L+    V+  
Sbjct: 410 LKLCFLYLSVFPEDYEVDVEKLIQLLVAEGFIQEDEEMTMEDVARYYIEDLVYISLVEVV 469

Query: 98  KRSDRGRINTGFIPGRCSPALLTVAFEGEFVISPIMDQEVKLWENVKRFTAHGNLNDFAF 157
           KR  +G++ +  I        +  + E  FV   + D++     + +R   H  ++D   
Sbjct: 470 KRK-KGKLMSFRIHDLVREFTIKKSKELNFV--NVYDEQHSSTTS-RREVVHHLMDDNYL 525

Query: 158 LD-HFDSFLHSLLHLTSGSHYLNPTYCEKICKMFKFLRVLDLGSLVLI-------RYPFE 209
            D   ++ + S L    G    + TY E I    K LRVL+LG L  I         P  
Sbjct: 526 CDRRVNTQMRSFLFF--GKRRNDITYVETITLKLKLLRVLNLGGLHFICQGYSPWSLPDV 583

Query: 210 IENLFLLRYLHLNIPSLKSLPSSLLNSLLNLYTLDKPFSYIDHTVD 255
           I  L  LRYL +    + +LP   +++L  L TLD   +  +   D
Sbjct: 584 IGGLVHLRYLGIADTVVNNLP-DFISNLRFLQTLDASGNSFERMTD 628

Potential disease resistance protein.
Arabidopsis thaliana (taxid: 3702)

>sp|Q9STE7|R13L3_ARATH Putative disease resistance RPP13-like protein 3 OS=Arabidopsis thaliana GN=RPP13L3 PE=3 SV=1

 Score = 68.9 bits (167), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 69/225 (30%), Positives = 106/225 (47%), Gaps = 26/225 (11%)

Query: 42  LKLCCLYLSVFPVHFEISTKQLYQLWIAEGFIPNNNEATAER----YLEQLINAGFVDAG 97
           LKLC LY SVFP  +EI  ++L  L +AEGFI  + E   E     Y+++L++   V A 
Sbjct: 417 LKLCFLYFSVFPEDYEIKVEKLIHLLVAEGFIQEDEEMMMEDVARCYIDELVDRSLVKA- 475

Query: 98  KRSDRGRINTGFIPGRCSPALLTVAFEGEFVISPIMDQEVKLWENVKRFTAHGNLNDFAF 157
           +R +RG++ +  I        +  A E  FV   + +++    +  +R   H  +ND+  
Sbjct: 476 ERIERGKVMSCRIHDLLRDLAIKKAKELNFV--NVYNEKQHSSDICRREVVHHLMNDYYL 533

Query: 158 LD-HFDSFLHSLLHLTS--GSHYLNPTYCEKICKMFKFLRVLDLGSLVLIRY------PF 208
            D   +  + S L +    G  Y+N T  +      K LRVL++  L+ +        P 
Sbjct: 534 CDRRVNKRMRSFLFIGERRGFGYVNTTNLK-----LKLLRVLNMEGLLFVSKNISNTLPD 588

Query: 209 EIENLFLLRYLHLNIPSLKSLPSSLLNSLLNLYTLD----KPFSY 249
            I  L  LRYL +    +  LP+S+ N L  L TLD     PF Y
Sbjct: 589 VIGELIHLRYLGIADTYVSILPASISN-LRFLQTLDASGNDPFQY 632

Potential disease resistance protein.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9M667|RPP13_ARATH Disease resistance protein RPP13 OS=Arabidopsis thaliana GN=RPP13 PE=2 SV=2

 Score = 67.8 bits (164), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 65/222 (29%), Positives = 108/222 (48%), Gaps = 20/222 (9%)

Query: 43  KLCCLYLSVFPVHFEISTKQLYQLWIAEGFIPNNNEATAER----YLEQLINAGFVDAGK 98
           KLC LYLS+FP  +EI  ++L  L +AEGFI  + E   E     Y+E+LI+   ++A +
Sbjct: 418 KLCFLYLSIFPEDYEIDLEKLIHLLVAEGFIQGDEEMMMEDVARYYIEELIDRSLLEAVR 477

Query: 99  RSDRGRINTGFIPGRCSPALLTVAFEGEFVISPIMDQEVKLWENV--KRFTAHGNLNDFA 156
           R +RG++ +  I        +  + E  FV   + +  V    +   +R   H     ++
Sbjct: 478 R-ERGKVMSCRIHDLLRDVAIKKSKELNFV--NVYNDHVAQHSSTTCRREVVHHQFKRYS 534

Query: 157 FLDHFDSFLHSLLHLTSGSHYLNPTYCEKICKMFKFLRVLDLGSLVLIRYPFEIE-NLFL 215
                +  + S L+     H +   +     +  K LRVLD GSL L   PF+I  +L  
Sbjct: 535 SEKRKNKRMRSFLYFGEFDHLVGLDF-----ETLKLLRVLDFGSLWL---PFKINGDLIH 586

Query: 216 LRYLHLNIPSLKSLP-SSLLNSLLNLYTLDKPFSY-IDHTVD 255
           LRYL ++  S+     +++++ L  L TL    +Y I+ T+D
Sbjct: 587 LRYLGIDGNSINDFDIAAIISKLRFLQTLFVSDNYFIEETID 628

Disease resistance protein. Resistance proteins guard the plant against pathogens that contain an appropriate avirulence protein via an indirect interaction with this avirulence protein. That triggers a defense system including the hypersensitive response, which restricts the pathogen growth. In contrast to other resistance proteins, it works independently of ESD1 and NSD1 proteins and does not require the accumulation of salicylic acid, suggesting the existence of an independent signaling pathway. The specificity to avirulence proteins differs in the different cultivars.

Arabidopsis thaliana (taxid: 3702)

>sp|Q6L3Z7|R1B14_SOLDE Putative late blight resistance protein homolog R1B-14 OS=Solanum demissum GN=R1B-14 PE=3 SV=1

 Score = 63.2 bits (152), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 74/239 (30%), Positives = 108/239 (45%), Gaps = 35/239 (14%)

Query: 25  DEPRGLQVVAYCMLLFYLKLCCLYLSVFPVHFEISTKQLYQLWIAEGFIPNNN----EAT 80
           ++ R +   +Y +L  +LK C LY   F     I   +L +LWI+E FI ++     E  
Sbjct: 770 NDSRAIVNQSYHVLPCHLKSCFLYFGAFLEDEVIDISRLIRLWISESFIKSSEGRRLEDI 829

Query: 81  AERYLEQLINAGFVDAGKRSDR-GRINTGFIPGRCSPALLTVAFEGEFVISPIMDQEVKL 139
           AE YLE LI    V   +R+D  G++       R    LL      +F      ++   L
Sbjct: 830 AEGYLENLIGRNLVMVTQRADSDGKVKA----CRLHDVLL------DFCKERAAEENFLL 879

Query: 140 WEN-----VKRFTAHGNLNDFAFLDHFD--------SFLHSLLHLTSGSHYLNPTYCEKI 186
           W N      K   +H      AF +  +        S + S+L     S+  +P +   +
Sbjct: 880 WINRDQISTKAVYSHKQHAHLAFTEMDNLVEWSASCSLVGSVLFKNPDSYLYSPAFSTSL 939

Query: 187 CKM-FKFLRVLDLGSLVLIRY-PFEIENLFLLRYLHLNIPSLKSLPSSLLNSLLNLYTL 243
             + FKFL+VLDL   V+I + P E   LF LRYL  +I    S+PSS+ N L NL TL
Sbjct: 940 ILLNFKFLKVLDLEHQVVIDFIPTE---LFYLRYLSASIEQ-NSIPSSISN-LWNLETL 993

Confers resistance to late blight (Phytophthora infestans) races carrying the avirulence gene Avr1. Resistance proteins guard the plant against pathogens that contain an appropriate avirulence protein via an indirect interaction with this avirulence protein. That triggers a defense system including the hypersensitive response, which restricts the pathogen growth.

Solanum demissum (taxid: 50514)

>sp|Q6L403|R1B17_SOLDE Putative late blight resistance protein homolog R1B-17 OS=Solanum demissum GN=R1B-17 PE=3 SV=1

 Score = 62.4 bits (150), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 74/239 (30%), Positives = 108/239 (45%), Gaps = 35/239 (14%)

Query: 25  DEPRGLQVVAYCMLLFYLKLCCLYLSVFPVHFEISTKQLYQLWIAEGFIPNNN----EAT 80
           ++ R +   +Y +L  +LK C LY   F     I   +L +LWI+E FI ++     E  
Sbjct: 770 NDSRAIVNQSYHVLPCHLKSCFLYFGAFLEDEVIDISRLIRLWISESFIKSSEGRRLEDI 829

Query: 81  AERYLEQLINAGFVDAGKRSDR-GRINTGFIPGRCSPALLTVAFEGEFVISPIMDQEVKL 139
           AE YLE LI    V   +R+D  G++       R    LL      +F      ++   L
Sbjct: 830 AEGYLENLIGRNLVMVTQRADSDGKVKA----CRLHDVLL------DFCKERAAEENFLL 879

Query: 140 WEN-----VKRFTAHGNLNDFAFLDHFD--------SFLHSLLHLTSGSHYLNPTYCEKI 186
           W N      K   +H      AF +  +        S + S+L     S+  +P +   +
Sbjct: 880 WINRDQISTKAVYSHKQHAHLAFTEMDNLVEWSASCSLVGSVLFKNPDSYLYSPAFSISL 939

Query: 187 CKM-FKFLRVLDLGSLVLIRY-PFEIENLFLLRYLHLNIPSLKSLPSSLLNSLLNLYTL 243
             + FKFL+VLDL   V+I + P E   LF LRYL  +I    S+PSS+ N L NL TL
Sbjct: 940 ILLNFKFLKVLDLERQVVIDFIPTE---LFYLRYLSASIEQ-NSIPSSISN-LWNLETL 993

Confers resistance to late blight (Phytophthora infestans) races carrying the avirulence gene Avr1. Resistance proteins guard the plant against pathogens that contain an appropriate avirulence protein via an indirect interaction with this avirulence protein. That triggers a defense system including the hypersensitive response, which restricts the pathogen growth.

Solanum demissum (taxid: 50514)

>sp|Q6L3Z4|R1B12_SOLDE Putative late blight resistance protein homolog R1B-12 OS=Solanum demissum GN=R1B-12 PE=3 SV=2

 Score = 58.2 bits (139), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 74/243 (30%), Positives = 102/243 (41%), Gaps = 36/243 (14%)

Query: 25   DEPRGLQVVAYCMLLFYLKLCCLYLSVFPVHFEISTKQLYQLWIAEGFIPNNN----EAT 80
            ++ R +   +Y +L F+LK C LY   F     I+  +L +LWI+E FI +      E  
Sbjct: 796  NDSRAIVDQSYHVLPFHLKSCFLYFGAFLEDRVINVSRLIRLWISESFIKSCEGRRLEDI 855

Query: 81   AERYLEQLINAGFVDAGKRSDR-GRINTGFIPGRCSPALLTVAFEGEFVISPIMDQEVKL 139
            AE YLE LI    V   +R++  G++    +           A E  F++    DQ  K 
Sbjct: 856  AEGYLENLIGRNLVMVTQRANSDGKVKACRLHDVLLDFCKERAAEENFLLRIKWDQSTKP 915

Query: 140  WENVKRFTAHGNLNDFAFLDHFDSFLHSLLHLTSGS-------HYLNPTYCEKICKM--- 189
               V     H +L  F  +D+       L   TSGS          +P +    C     
Sbjct: 916  SSCVYSHKQHAHLA-FTGMDNL------LEWSTSGSLVGSVLFKNYDPNFAYNSCSSHAF 968

Query: 190  --------FKFLRVLDLGSLVLIRY-PFEIENLFLLRYLHLNIPSLKSLPSSLLNSLLNL 240
                    FKFL+VLDL     I + P E   L  LRYL   I    S+PSS+ N L NL
Sbjct: 969  AISRILPNFKFLKVLDLEHQFFIDFIPTE---LLYLRYLSARIGQ-NSIPSSISN-LWNL 1023

Query: 241  YTL 243
             TL
Sbjct: 1024 ETL 1026

Confers resistance to late blight (Phytophthora infestans) races carrying the avirulence gene Avr1. Resistance proteins guard the plant against pathogens that contain an appropriate avirulence protein via an indirect interaction with this avirulence protein. That triggers a defense system including the hypersensitive response, which restricts the pathogen growth.

Solanum demissum (taxid: 50514)

>sp|Q6L400|R1B16_SOLDE Putative late blight resistance protein homolog R1B-16 OS=Solanum demissum GN=R1B-16 PE=3 SV=1

 Score = 57.0 bits (136), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 74/240 (30%), Positives = 102/240 (42%), Gaps = 37/240 (15%)

Query: 25  DEPRGLQVVAYCMLLFYLKLCCLYLSVFPVHFEISTKQLYQLWIAEGFIPNNN----EAT 80
           ++ R +   +Y +L  +LK C LY   F     I   +L +LWI+E FI ++     E  
Sbjct: 768 NDSRAIVNQSYHVLPCHLKSCFLYFGAFLEDEVIDISRLIRLWISESFIKSSEGRRLEDI 827

Query: 81  AERYLEQLINAGFVDAGKRSDR-GRINTGFIPGRCSPALLTVAFEGEFVISPIMDQEVKL 139
           AE YLE LI    V   +R+D  G++       R    LL      +F      ++   L
Sbjct: 828 AEGYLENLIGRNLVMVTQRADSDGKVKA----CRLHDVLL------DFCKERAAEENFLL 877

Query: 140 WENVKRFT----AHGNLNDFAFLDHFDSFLHSLLHLTSGSHYLNPTYCEK---------- 185
           W N  + T    +H      AF +  DS +      +     L   Y  +          
Sbjct: 878 WINRDQSTNAVYSHKRHAHLAFTE-MDSLVEWSASCSLVGSVLLKNYARRPLSSPAFSIS 936

Query: 186 -ICKMFKFLRVLDLGSLVLI-RYPFEIENLFLLRYLHLNIPSLKSLPSSLLNSLLNLYTL 243
            I   FKFL+VLDL   V+I   P E   LF LRYL   I    S+PSS+ N L NL TL
Sbjct: 937 HILLNFKFLKVLDLEHQVVIDSIPTE---LFYLRYLSARIEQ-NSIPSSISN-LWNLETL 991

Confers resistance to late blight (Phytophthora infestans) races carrying the avirulence gene Avr1. Resistance proteins guard the plant against pathogens that contain an appropriate avirulence protein via an indirect interaction with this avirulence protein. That triggers a defense system including the hypersensitive response, which restricts the pathogen growth.

Solanum demissum (taxid: 50514)

>sp|Q6L3X3|R1B8_SOLDE Putative late blight resistance protein homolog R1B-8 OS=Solanum demissum GN=R1B-8 PE=5 SV=1

 Score = 56.2 bits (134), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 75/243 (30%), Positives = 105/243 (43%), Gaps = 41/243 (16%)

Query: 25  DEPRGLQVVAYCMLLFYLKLCCLYLSVFPVHFEISTKQLYQLWIAEGFIPNNN----EAT 80
           ++ R +   +Y +L  +LK C LY   F     I   +L  LWI+E FI +      E  
Sbjct: 689 NDSRAIVDQSYHVLPCHLKSCFLYFGAFLEDRVIDISRLIGLWISESFIKSCEGRRLEYI 748

Query: 81  AERYLEQLINAGFVDAGKRSDRGRINTGFIPG-RCSPALL----TVAFEGEFVISPIMDQ 135
           AE YLE LI    V   +R+    I+ G +   R    LL      A E  F++    DQ
Sbjct: 749 AEGYLENLIGRNLVMVTQRA----ISDGKVKACRLHDVLLDFCKKRAAEENFLLWINRDQ 804

Query: 136 EVKL--------------WENVKRFTAHGNLNDFAFLDHFDSFLHSLLHLTSGSHYLNPT 181
             K                +N+  ++A  +L        +D +   L      SH    +
Sbjct: 805 STKAVYSHKQHAHLAFTEMDNLVEWSASCSLVGSVLFKSYDPYFRPL-----SSHAFAIS 859

Query: 182 YCEKICKMFKFLRVLDLGSLVLIRY-PFEIENLFLLRYLHLNIPSLKSLPSSLLNSLLNL 240
           +   I   FKFL+VLDL   V+I + P E   LF LRYL  +I    S+PSS+ N L NL
Sbjct: 860 H---ILLNFKFLKVLDLEHQVIIDFIPTE---LFYLRYLSAHIDQ-NSIPSSISN-LWNL 911

Query: 241 YTL 243
            TL
Sbjct: 912 ETL 914

Confers resistance to late blight (Phytophthora infestans) races carrying the avirulence gene Avr1. Resistance proteins guard the plant against pathogens that contain an appropriate avirulence protein via an indirect interaction with this avirulence protein. That triggers a defense system including the hypersensitive response, which restricts the pathogen growth.

Solanum demissum (taxid: 50514)

>sp|Q6L439|R1A4_SOLDE Putative late blight resistance protein homolog R1A-4 OS=Solanum demissum GN=R1A-4 PE=5 SV=2

 Score = 55.5 bits (132), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 76/232 (32%), Positives = 105/232 (45%), Gaps = 27/232 (11%)

Query: 28  RGLQVVAYCMLLFYLKLCCLYLSVFPVHFEISTKQLYQLWIAEGFIPNNN----EATAER 83
           R +   +Y +L  +LK C LY   F    EI   +L +LWI+E FI +      E  AE 
Sbjct: 764 RAIVDQSYHVLPCHLKSCFLYFGAFLGVREIRISRLIRLWISESFIKSCEGRRLEDIAEG 823

Query: 84  YLEQLINAGFVDAGKRSDRGRINTGFIPGRCSPALLTV----AFEGEFVISPIMDQEVKL 139
           YLE LI    V   +R++    N      R    LL      A E   ++    DQ  K 
Sbjct: 824 YLENLIGRNLVMVTQRANS---NGKVKACRLHDVLLNFCKERAAEENLLLWINRDQSTKA 880

Query: 140 WENVKR-----FTAHGNLNDFAFLDHFDSFLHSLLHLTSGSHYLN-PTYC-EKICKMFKF 192
             + K+     FT   NL +++      S + S+L +    ++   P Y    I   FKF
Sbjct: 881 VYSHKQHAHLAFTKMDNLVEWS---ASSSLVGSVLIMRYNPYFARCPLYAVSHILLNFKF 937

Query: 193 LRVLDLGSLVLIRY-PFEIENLFLLRYLHLNIPSLKSLPSSLLNSLLNLYTL 243
           L+VLDL   V+I + P E   L  LRYL  +I    S+PSS+ N L NL TL
Sbjct: 938 LKVLDLKHQVVIDFIPTE---LPYLRYLTADIGQ-NSIPSSISN-LWNLETL 984

Confers resistance to late blight (Phytophthora infestans) races carrying the avirulence gene Avr1. Resistance proteins guard the plant against pathogens that contain an appropriate avirulence protein via an indirect interaction with this avirulence protein. That triggers a defense system including the hypersensitive response, which restricts the pathogen growth.

Solanum demissum (taxid: 50514)

>sp|Q6L3N7|R1C3_SOLDE Putative late blight resistance protein homolog R1C-3 OS=Solanum demissum GN=R1C-3 PE=3 SV=1

 Score = 53.9 bits (128), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 73/239 (30%), Positives = 101/239 (42%), Gaps = 28/239 (11%)

Query: 25  DEPRGLQVVAYCMLLFYLKLCCLYLSVFPVHFEISTKQLYQLWIAEGFIPNNN----EAT 80
           ++ R +   +Y +L  +LK C LY   F     I   +L +LWI+E F+ +      E  
Sbjct: 739 NDSRAVVDQSYHVLPCHLKSCFLYFGAFLEDRVIDISRLIRLWISESFVKSCEGRSLEDI 798

Query: 81  AERYLEQLINAGFVDAGKRSDR-GRINTGFIPGRCSPALLTVAFEGEFVISPIMDQEVKL 139
           AE YLE LI    V   +R D  G++    +           A E  F++    DQ  K 
Sbjct: 799 AEGYLENLIGRNLVMVTQRDDSDGKVKACRLHDVLLDFCKERAAEENFLLWINRDQITKP 858

Query: 140 WENVKRFTAHGNLNDFAFLDHFDSFLHSLLHLTSGS---HYLNPTYC-----------EK 185
              V     H +L   AF D  +    S      GS      +P +             +
Sbjct: 859 SSCVYSHNQHAHL---AFTDMKNLVEWSASCSRVGSVLFKNYDPYFAGRPLSSHAFSISR 915

Query: 186 ICKMFKFLRVLDLGSLVLI-RYPFEIENLFLLRYLHLNIPSLKSLPSSLLNSLLNLYTL 243
           I   FKFL+VLDL   V+I   P E   LF LRY+  +I    S+PSS+ N L NL TL
Sbjct: 916 ILLNFKFLKVLDLEHQVVIDSIPTE---LFYLRYISAHIEQ-NSIPSSISN-LWNLETL 969

Confers resistance to late blight (Phytophthora infestans) races carrying the avirulence gene Avr1. Resistance proteins guard the plant against pathogens that contain an appropriate avirulence protein via an indirect interaction with this avirulence protein. That triggers a defense system including the hypersensitive response, which restricts the pathogen growth.

Solanum demissum (taxid: 50514)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	257
147766268	931	hypothetical protein VITISV_032893 [Viti	0.859	0.237	0.317	2e-19
359474448	931	PREDICTED: disease resistance protein RP	0.859	0.237	0.317	2e-19
115476476	907	Os08g0424700 [Oryza sativa Japonica Grou	0.941	0.266	0.322	6e-19
359496848	856	PREDICTED: disease resistance RPP8-like	0.817	0.245	0.318	6e-19
222640579	854	hypothetical protein OsJ_27368 [Oryza sa	0.941	0.283	0.322	6e-19
147766035	902	hypothetical protein VITISV_038742 [Viti	0.817	0.232	0.318	1e-18
224071419	946	nbs-lrr resistance protein [Populus tric	0.875	0.237	0.324	5e-18
224098990	948	nbs-lrr resistance protein [Populus tric	0.824	0.223	0.336	8e-18
105922948	1997	NBS-NBS-LRR type disease resistance prot	0.824	0.106	0.331	1e-17
224138304	948	nbs-lrr resistance protein [Populus tric	0.824	0.223	0.331	2e-17

>gi|147766268|emb|CAN74463.1| hypothetical protein VITISV_032893 [Vitis vinifera]

 Score =  102 bits (253), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 73/230 (31%), Positives = 114/230 (49%), Gaps = 9/230 (3%)

Query: 25  DEPRGLQVVAYCMLLFYLKLCCLYLSVFPVHFEISTKQLYQLWIAEGFIP----NNNEAT 80
           D  + + +++Y  L +YLK C LY+S+FP  + I   +L +LW+AEGF+        E  
Sbjct: 418 DSLKEILLLSYNDLPYYLKSCFLYMSIFPEDYLIRRMRLIRLWMAEGFVEAKGRKTQEEV 477

Query: 81  AERYLEQLINAGFVDAGKRSDRGRINTGFIPGRCSPALLTVAFEGEFVISPIMDQEVKLW 140
            E YL +L+N   V    R+  GR++T  +        ++ +  G+ +++   ++ V+  
Sbjct: 478 GEGYLNELVNRSLVQVATRTRNGRVSTCRVHDLLREIXVSXSRGGQNLVAIANEENVRWP 537

Query: 141 ENVKRFTAHGNLNDFAFLDHFDSFLHSLLHLTSGSHYLNPTYCEKICKMFKFLRVLDLGS 200
           E ++R   H  L +    D     L SLL  +  S    PT         + L+VLDL  
Sbjct: 538 EKIRRLAVHKTLENVP-QDMVLGQLRSLLMFSLPSGDCIPTLSS---GGLRLLKVLDLQG 593

Query: 201 LVLIRYPFEIENLFLLRYLHLNIPSLKSLPSSLLNSLLNLYTLDKPFSYI 250
             L   P E+ NLF LRYL L+   +K +PSS +  L NL TLD   SY+
Sbjct: 594 APLEIIPNEVWNLFNLRYLSLSRTKVKVIPSS-IGKLQNLETLDLKHSYV 642

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359474448|ref|XP_003631469.1| PREDICTED: disease resistance protein RPM1-like [Vitis vinifera]

 Score =  101 bits (252), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 73/230 (31%), Positives = 115/230 (50%), Gaps = 9/230 (3%)

Query: 25  DEPRGLQVVAYCMLLFYLKLCCLYLSVFPVHFEISTKQLYQLWIAEGFIP----NNNEAT 80
           D  + + +++Y  L +YLK C LY+S+FP  + I   +L +LW+AEGF+        E  
Sbjct: 418 DSLKEILLLSYNDLPYYLKSCFLYMSIFPEDYLIRRMRLIRLWMAEGFVEAKGRKTQEEV 477

Query: 81  AERYLEQLINAGFVDAGKRSDRGRINTGFIPGRCSPALLTVAFEGEFVISPIMDQEVKLW 140
            E YL +L+N   V    R+  GR++T  +       +++ +  G+ +++   ++ V+  
Sbjct: 478 GEGYLNELVNRSLVQVATRTRNGRVSTCRVHDLLREIIVSKSRGGQNLVAIANEENVRWP 537

Query: 141 ENVKRFTAHGNLNDFAFLDHFDSFLHSLLHLTSGSHYLNPTYCEKICKMFKFLRVLDLGS 200
           E ++R   H  L +    D     L SLL  +  S    PT         + L+VLDL  
Sbjct: 538 EKIRRLAVHKTLENVP-QDMELGQLRSLLMFSLPSGDCIPTLSS---GGLRLLKVLDLQG 593

Query: 201 LVLIRYPFEIENLFLLRYLHLNIPSLKSLPSSLLNSLLNLYTLDKPFSYI 250
             L   P E+ NLF LRYL L+   +K +PSS +  L NL TLD   SY+
Sbjct: 594 APLEIIPNEVWNLFNLRYLSLSRTKVKVIPSS-IGKLQNLETLDLKHSYV 642

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|115476476|ref|NP_001061834.1| Os08g0424700 [Oryza sativa Japonica Group] gi|27817976|dbj|BAC55740.1| putative disease resistance gene homolog [Oryza sativa Japonica Group] gi|37806292|dbj|BAC99807.1| putative disease resistance gene homolog [Oryza sativa Japonica Group] gi|113623803|dbj|BAF23748.1| Os08g0424700 [Oryza sativa Japonica Group] gi|161376418|gb|ABX71479.1| putative disease resistance-like protein [Oryza sativa Japonica Group]

 Score =  100 bits (249), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 82/254 (32%), Positives = 122/254 (48%), Gaps = 12/254 (4%)

Query: 3   AVVVRRNYLFVLDRKFVPVEALDEPRGLQVVAYCMLLFYLKLCCLYLSVFPVHFEISTKQ 62
            V V +N L  L +K++P   L     +   AY  L  +LK C LY  +FP  + I    
Sbjct: 381 TVQVWKNVLDNLHKKYLPEFTLP---SILWFAYSDLPHHLKCCLLYFIMFPRKYSIKRMT 437

Query: 63  LYQLWIAEGFIPNNNEATAE----RYLEQLINAGFVDAGKRSDRGRINTGFIPGRCSPAL 118
           L +LW+AEGFI N+ E+T E    RYL +LI+ G V      D GR+ +  +       +
Sbjct: 438 LIRLWMAEGFIKNDQESTLEDTAGRYLTELIDRGMVQVADFYDYGRVKSCSVHDMLREII 497

Query: 119 LTVAFEGEFVISPIMDQEVKLWENVKRFTAHGNLNDFAFLDHFDSFLHSLLHLTSGSHYL 178
           +  + E  F I P+     K+  NV+R +   N ND    D+  + L +L     G+  +
Sbjct: 498 ILKSTEDNFGI-PVTRGVNKVRGNVRRLSII-NTNDDFLEDNSCTNLRTLFVF--GASSI 553

Query: 179 NPTYCEKICKMFKFLRVLDLGSLVLIRYPFEIENLFLLRYLHLNIPSLKSLPSSLLNSLL 238
           + T        F+ LR+LDL    +   P E+ +LF LRYL L    +  LP S L  ++
Sbjct: 554 STTSLHAFLVGFRLLRILDLEGAPVESLPDELPDLFYLRYLSLRNTRIDKLPKS-LKKMM 612

Query: 239 NLYTLDKPFSYIDH 252
           NL TLD   +Y+  
Sbjct: 613 NLQTLDLKGTYVSQ 626

Source: Oryza sativa Japonica Group

Species: Oryza sativa

Genus: Oryza

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359496848|ref|XP_002269653.2| PREDICTED: disease resistance RPP8-like protein 3-like [Vitis vinifera]

 Score =  100 bits (249), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 70/220 (31%), Positives = 106/220 (48%), Gaps = 10/220 (4%)

Query: 32  VVAYCMLLFYLKLCCLYLSVFPVHFEISTKQLYQLWIAEGFIPNNNEAT----AERYLEQ 87
            ++Y  L +YLK C LY  +FP   EI   +L  LWIAEGF+    E +    AE +LE+
Sbjct: 371 ALSYNDLPYYLKPCFLYFGLFPEDLEIPVGKLVLLWIAEGFVQQRGEESMEDVAEDFLEE 430

Query: 88  LINAGFVDAGKRSDRGRINTGFIPGRCSPALLTVAFEGEFVISPIMDQ---EVKLWENVK 144
           L++   +   ++   G+I    I        ++ A E +F+   I+D    +  +    +
Sbjct: 431 LVDRSMIQVAEKRYNGKIKACRIHDLLRDLAMSEAKECKFL--EILDSTNIDTSVTTRAR 488

Query: 145 RFTAHGNLNDFAFLDHFDSFLHSLLHLTSGSHYLNPTYCEKICKMFKFLRVLDLGSLVLI 204
           R + H +L ++  L H +    S+LH +     L     + + +  K LRVLDL  +   
Sbjct: 489 RISVHSSLEEYMKLRHPNPHFRSMLHFSRCEESLRRDQWKSLFESLKLLRVLDLERVQTH 548

Query: 205 RYPFEIENLFLLRYLHLNIPSLKSLPSSLLNSLLNLYTLD 244
             P EI  L  LRYL L    L+ LPSS+ N   NL TLD
Sbjct: 549 ALPKEIRELVHLRYLGLRRTGLQRLPSSIQN-FCNLQTLD 587

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|222640579|gb|EEE68711.1| hypothetical protein OsJ_27368 [Oryza sativa Japonica Group]

 Score =  100 bits (249), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 82/254 (32%), Positives = 122/254 (48%), Gaps = 12/254 (4%)

Query: 3   AVVVRRNYLFVLDRKFVPVEALDEPRGLQVVAYCMLLFYLKLCCLYLSVFPVHFEISTKQ 62
            V V +N L  L +K++P   L     +   AY  L  +LK C LY  +FP  + I    
Sbjct: 328 TVQVWKNVLDNLHKKYLPEFTLP---SILWFAYSDLPHHLKCCLLYFIMFPRKYSIKRMT 384

Query: 63  LYQLWIAEGFIPNNNEATAE----RYLEQLINAGFVDAGKRSDRGRINTGFIPGRCSPAL 118
           L +LW+AEGFI N+ E+T E    RYL +LI+ G V      D GR+ +  +       +
Sbjct: 385 LIRLWMAEGFIKNDQESTLEDTAGRYLTELIDRGMVQVADFYDYGRVKSCSVHDMLREII 444

Query: 119 LTVAFEGEFVISPIMDQEVKLWENVKRFTAHGNLNDFAFLDHFDSFLHSLLHLTSGSHYL 178
           +  + E  F I P+     K+  NV+R +   N ND    D+  + L +L     G+  +
Sbjct: 445 ILKSTEDNFGI-PVTRGVNKVRGNVRRLSII-NTNDDFLEDNSCTNLRTL--FVFGASSI 500

Query: 179 NPTYCEKICKMFKFLRVLDLGSLVLIRYPFEIENLFLLRYLHLNIPSLKSLPSSLLNSLL 238
           + T        F+ LR+LDL    +   P E+ +LF LRYL L    +  LP S L  ++
Sbjct: 501 STTSLHAFLVGFRLLRILDLEGAPVESLPDELPDLFYLRYLSLRNTRIDKLPKS-LKKMM 559

Query: 239 NLYTLDKPFSYIDH 252
           NL TLD   +Y+  
Sbjct: 560 NLQTLDLKGTYVSQ 573

Source: Oryza sativa Japonica Group

Species: Oryza sativa

Genus: Oryza

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147766035|emb|CAN70214.1| hypothetical protein VITISV_038742 [Vitis vinifera]

 Score = 99.8 bits (247), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 70/220 (31%), Positives = 106/220 (48%), Gaps = 10/220 (4%)

Query: 32  VVAYCMLLFYLKLCCLYLSVFPVHFEISTKQLYQLWIAEGFIPNNNEAT----AERYLEQ 87
            ++Y  L +YLK C LY  +FP   EI   +L  LWIAEGF+    E +    AE +LE+
Sbjct: 417 ALSYNDLPYYLKPCFLYFGLFPEDLEIPVGKLVLLWIAEGFVQQRGEESMEDVAEDFLEE 476

Query: 88  LINAGFVDAGKRSDRGRINTGFIPGRCSPALLTVAFEGEFVISPIMDQ---EVKLWENVK 144
           L++   +   ++   G+I    I        ++ A E +F+   I+D    +  +    +
Sbjct: 477 LVDRSMIQVAEKRYNGKIKMCRIHDLLRDLAMSEAKECKFL--EILDSTNIDTSVTTRAR 534

Query: 145 RFTAHGNLNDFAFLDHFDSFLHSLLHLTSGSHYLNPTYCEKICKMFKFLRVLDLGSLVLI 204
           R + H +L ++  L H +    S+LH +     L     + + +  K LRVLDL  +   
Sbjct: 535 RISVHSSLEEYMKLRHPNPHFRSMLHFSRCEESLRREQWKSLFESLKLLRVLDLERVQTH 594

Query: 205 RYPFEIENLFLLRYLHLNIPSLKSLPSSLLNSLLNLYTLD 244
             P EI  L  LRYL L    L+ LPSS+ N   NL TLD
Sbjct: 595 ALPKEIRELVHLRYLGLRRTGLQRLPSSVQN-FCNLQTLD 633

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224071419|ref|XP_002303451.1| nbs-lrr resistance protein [Populus trichocarpa] gi|105923008|gb|ABF81450.1| NBS-LRR type disease resistance protein [Populus trichocarpa] gi|222840883|gb|EEE78430.1| nbs-lrr resistance protein [Populus trichocarpa]

 Score = 97.4 bits (241), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 76/234 (32%), Positives = 112/234 (47%), Gaps = 9/234 (3%)

Query: 22  EALDEPRGLQVVAYCMLLFYLKLCCLYLSVFPVHFEISTKQLYQLWIAEGFIPNNN---- 77
           + L   R +  ++Y  L +YLK C LY S+FP    I   +L +LWIAEGF+        
Sbjct: 404 DTLMSTRKILSLSYNDLPYYLKSCLLYFSIFPAGNPIERMKLIRLWIAEGFVEGKEVMTL 463

Query: 78  EATAERYLEQLINAGFVDAGKRSDRGRINTGFIPGRCSPALLTVAFEGEFVISPIMDQEV 137
           E  AE YL +LI    V   + +  GR+ T  I       ++T A + +FV   I  +E 
Sbjct: 464 EEVAEDYLNELIKRSLVRVVEATSDGRVKTCRIHDLLREIMITKAKDQDFV--AIAKEEG 521

Query: 138 KLW-ENVKRFTAHGNLNDFAFLDHFDSFLHSLLHLTSGSHYLNPTYCEKICKMFKFLRVL 196
            +W E V+R + H  +       H  S L S+L         +           + L VL
Sbjct: 522 MVWSEKVRRVSIHKAVPSIQ-RRHVPSRLRSVLIFWGADSCPDSPAPNLSFGHLRLLNVL 580

Query: 197 DLGSLVLIRYPFEIENLFLLRYLHLNIPSLKSLPSSLLNSLLNLYTLDKPFSYI 250
           DL    L  +P ++ +LFLL+YL L   ++ S+PSS ++ LLNL TLD   + I
Sbjct: 581 DLEGAPLKEFPSKVSSLFLLKYLSLRNTNVNSIPSS-ISKLLNLETLDLKHTQI 633

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224098990|ref|XP_002334517.1| nbs-lrr resistance protein [Populus trichocarpa] gi|222872779|gb|EEF09910.1| nbs-lrr resistance protein [Populus trichocarpa]

 Score = 96.7 bits (239), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 75/223 (33%), Positives = 109/223 (48%), Gaps = 11/223 (4%)

Query: 28  RGLQVVAYCMLLFYLKLCCLYLSVFPVHFEISTKQLYQLWIAEGFIPNNN----EATAER 83
           R +  ++Y  L +YLK C LY S+FPV   I   +L +LWIAEGF+        E  A+ 
Sbjct: 410 RKILSLSYNDLPYYLKSCLLYFSIFPVGNRIKRMRLIRLWIAEGFVKGKEGMTVEEVAQD 469

Query: 84  YLEQLINAGFVDAGKRSDRGRINTGFIPGRCSPALLTVAFEGEFVISPIMDQEVKLW-EN 142
           YL +L+    V   K +  GR+ T  +       ++T A + +FV   I  +E  +W E 
Sbjct: 470 YLNELMKRSLVQVVKATSDGRVKTCRVHDLLREIMITKAKDQDFV--AIAKEEGTIWPEK 527

Query: 143 VKRFTAHGNLNDFAFLDHFDSFLHSLLHLTSGS-HYLNPTYCEKICKMFKFLRVLDLGSL 201
           V+R + H N+       H  S   SLL        Y +P +        + L VLDL   
Sbjct: 528 VRRVSMH-NVMPSKQQRHVASRFRSLLTFWGADCSYESPVH-NLFSGRLRLLHVLDLEGA 585

Query: 202 VLIRYPFEIENLFLLRYLHLNIPSLKSLPSSLLNSLLNLYTLD 244
            L  +P E+ +LFLL+YL L    +  +PSS ++ L NL TLD
Sbjct: 586 PLKEFPNEVVSLFLLKYLSLRNTRVSFIPSS-ISKLKNLETLD 627

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|105922948|gb|ABF81446.1| NBS-NBS-LRR type disease resistance protein [Populus trichocarpa]

 Score = 96.3 bits (238), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 74/223 (33%), Positives = 110/223 (49%), Gaps = 11/223 (4%)

Query: 28   RGLQVVAYCMLLFYLKLCCLYLSVFPVHFEISTKQLYQLWIAEGFIPNNN----EATAER 83
            R +  ++Y  L +YLK C LY S+FPV   I   +L +LWIAEGF+        E  A+ 
Sbjct: 1413 RKILSLSYNDLPYYLKSCLLYFSIFPVGNRIKRMRLIRLWIAEGFVKGKEGMTVEEVAQD 1472

Query: 84   YLEQLINAGFVDAGKRSDRGRINTGFIPGRCSPALLTVAFEGEFVISPIMDQEVKLW-EN 142
            YL +L+    V   + +  GR+ T  +       ++T A + +FV   I  +E  +W E 
Sbjct: 1473 YLNELMKRSLVQVVRATSDGRVKTCRVHDLLREIMITKAKDQDFV--AIAKEEGTIWPEK 1530

Query: 143  VKRFTAHGNLNDFAFLDHFDSFLHSLLHL-TSGSHYLNPTYCEKICKMFKFLRVLDLGSL 201
            V+R + H N+       H  S   SLL    +   Y +P +        + L VLDL   
Sbjct: 1531 VRRVSMH-NVMPSKQQRHVASRFRSLLTFWVADCSYESPVH-NLFSGRLRLLHVLDLEGA 1588

Query: 202  VLIRYPFEIENLFLLRYLHLNIPSLKSLPSSLLNSLLNLYTLD 244
             L  +P E+ +LFLL+YL L    +  +PSS ++ L NL TLD
Sbjct: 1589 PLKEFPNEVVSLFLLKYLSLRNTRVSFIPSS-ISKLKNLETLD 1630

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224138304|ref|XP_002326569.1| nbs-lrr resistance protein [Populus trichocarpa] gi|222833891|gb|EEE72368.1| nbs-lrr resistance protein [Populus trichocarpa]

 Score = 95.9 bits (237), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 74/223 (33%), Positives = 110/223 (49%), Gaps = 11/223 (4%)

Query: 28  RGLQVVAYCMLLFYLKLCCLYLSVFPVHFEISTKQLYQLWIAEGFIPNNN----EATAER 83
           R +  ++Y  L +YLK C LY S+FPV   I   +L +LWIAEGF+        E  A+ 
Sbjct: 410 RKILSLSYNDLPYYLKSCLLYFSIFPVGNRIKRMRLIRLWIAEGFVKGKEGMTVEEVAQD 469

Query: 84  YLEQLINAGFVDAGKRSDRGRINTGFIPGRCSPALLTVAFEGEFVISPIMDQEVKLW-EN 142
           YL +L+    V   + +  GR+ T  +       ++T A + +FV   I  +E  +W E 
Sbjct: 470 YLNELMKRSLVQVVRATSDGRVKTCRVHDLLREIMITKAKDQDFV--AIAKEEGTIWPEK 527

Query: 143 VKRFTAHGNLNDFAFLDHFDSFLHSLLHL-TSGSHYLNPTYCEKICKMFKFLRVLDLGSL 201
           V+R + H N+       H  S   SLL    +   Y +P +        + L VLDL   
Sbjct: 528 VRRVSMH-NVMPSKQQRHVASRFRSLLTFWVADCSYESPVH-NLFSGRLRLLHVLDLEGA 585

Query: 202 VLIRYPFEIENLFLLRYLHLNIPSLKSLPSSLLNSLLNLYTLD 244
            L  +P E+ +LFLL+YL L    +  +PSS ++ L NL TLD
Sbjct: 586 PLKEFPNEVVSLFLLKYLSLRNTRVSFIPSS-ISKLKNLETLD 627

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	257
TAIR|locus:2075170	835	RPP13 "RECOGNITION OF PERONOSP	0.214	0.065	0.366	0.00031

TAIR|locus:2075170 RPP13 "RECOGNITION OF PERONOSPORA PARASITICA 13" [Arabidopsis thaliana (taxid:3702)]

 Score = 98 (39.6 bits), Expect = 0.00031, Sum P(2) = 0.00031
 Identities = 22/60 (36%), Positives = 37/60 (61%)

Query:    50 SVFPVHFEISTKQLYQLWIAEGFIPNNNEA----TAERYLEQLINAGFVDAGKRSDRGRI 105
             S+FP  +EI  ++L  L +AEGFI  + E      A  Y+E+LI+   ++A +R +RG++
Sbjct:   425 SIFPEDYEIDLEKLIHLLVAEGFIQGDEEMMMEDVARYYIEELIDRSLLEAVRR-ERGKV 483

GO:0005634 "nucleus" evidence=ISM

GO:0006952 "defense response" evidence=IEA;ISS;TAS

GO:0043531 "ADP binding" evidence=IEA

GO:0005737 "cytoplasm" evidence=TAS

GO:0009814 "defense response, incompatible interaction" evidence=IMP

GO:0005886 "plasma membrane" evidence=IDA

GO:0009626 "plant-type hypersensitive response" evidence=IMP

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	257
pfam00931	285	pfam00931, NB-ARC, NB-ARC domain	9e-08

>gnl|CDD|216202 pfam00931, NB-ARC, NB-ARC domain

 Score = 51.6 bits (124), Expect = 9e-08
 Identities = 24/71 (33%), Positives = 41/71 (57%)

Query: 8   RNYLFVLDRKFVPVEALDEPRGLQVVAYCMLLFYLKLCCLYLSVFPVHFEISTKQLYQLW 67
            + L  L+ +    + L+E   +  ++Y  L  +LK C LYL++FP  + I  +QL +LW
Sbjct: 215 EHVLEQLNNELAGRDGLNEVLSILSLSYDNLPMHLKRCFLYLALFPEDYNIRKEQLIKLW 274

Query: 68  IAEGFIPNNNE 78
           IAEGF+  ++ 
Sbjct: 275 IAEGFVIPSDI 285

Length = 285

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	257
KOG4658	889	consensus Apoptotic ATPase [Signal transduction me	100.0
PLN03210	1153	Resistant to P. syringae 6; Provisional	99.88
PF00931	287	NB-ARC: NB-ARC domain; InterPro: IPR002182 This is	99.15
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	98.93
KOG0617	264	consensus Ras suppressor protein (contains leucine	98.92
KOG0617	264	consensus Ras suppressor protein (contains leucine	98.85
KOG0444	1255	consensus Cytoskeletal regulator Flightless-I (con	98.78
PLN03150	623	hypothetical protein; Provisional	98.6
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	98.6
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	98.55
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	98.54
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	98.5
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	98.4
KOG0444	1255	consensus Cytoskeletal regulator Flightless-I (con	98.38
KOG0472	565	consensus Leucine-rich repeat protein [Function un	98.38
KOG0472	565	consensus Leucine-rich repeat protein [Function un	98.36
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	98.34
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	98.32
PLN03150	623	hypothetical protein; Provisional	98.27
PLN03210	1153	Resistant to P. syringae 6; Provisional	98.19
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	98.13
KOG0618	1081	consensus Serine/threonine phosphatase 2C containi	97.99
KOG0618	1081	consensus Serine/threonine phosphatase 2C containi	97.95
KOG4194	873	consensus Membrane glycoprotein LIG-1 [Signal tran	97.93
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	97.92
KOG4579	177	consensus Leucine-rich repeat (LRR) protein associ	97.91
KOG4194	873	consensus Membrane glycoprotein LIG-1 [Signal tran	97.88
KOG1259	490	consensus Nischarin, modulator of integrin alpha5	97.86
KOG4658	889	consensus Apoptotic ATPase [Signal transduction me	97.76
KOG1259	490	consensus Nischarin, modulator of integrin alpha5	97.73
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	97.67
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	97.66
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	97.6
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	97.6
COG4886	394	Leucine-rich repeat (LRR) protein [Function unknow	97.59
KOG4237	498	consensus Extracellular matrix protein slit, conta	97.58
KOG0532	722	consensus Leucine-rich repeat (LRR) protein, conta	97.52
KOG0532	722	consensus Leucine-rich repeat (LRR) protein, conta	97.5
KOG3665	699	consensus ZYG-1-like serine/threonine protein kina	97.45
KOG4237	498	consensus Extracellular matrix protein slit, conta	97.32
PRK15386	426	type III secretion protein GogB; Provisional	97.2
COG4886	394	Leucine-rich repeat (LRR) protein [Function unknow	97.04
KOG3665	699	consensus ZYG-1-like serine/threonine protein kina	97.01
KOG4579	177	consensus Leucine-rich repeat (LRR) protein associ	96.96
PF00560	22	LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Le	96.92
PRK15386	426	type III secretion protein GogB; Provisional	96.84
PF00560	22	LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Le	96.64
KOG3207	505	consensus Beta-tubulin folding cofactor E [Posttra	96.64
KOG1909	382	consensus Ran GTPase-activating protein [RNA proce	96.61
KOG0531	414	consensus Protein phosphatase 1, regulatory subuni	96.6
KOG1644	233	consensus U2-associated snRNP A' protein [RNA proc	96.53
KOG1909	382	consensus Ran GTPase-activating protein [RNA proce	96.53
PF13504	17	LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OO	96.4
KOG0531	414	consensus Protein phosphatase 1, regulatory subuni	96.24
KOG2982	418	consensus Uncharacterized conserved protein [Funct	96.18
KOG1859	1096	consensus Leucine-rich repeat proteins [General fu	96.02
KOG3207	505	consensus Beta-tubulin folding cofactor E [Posttra	96.01
PF13504	17	LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OO	95.78
KOG2739	260	consensus Leucine-rich acidic nuclear protein [Cel	95.47
KOG1859	1096	consensus Leucine-rich repeat proteins [General fu	95.05
smart00370	26	LRR Leucine-rich repeats, outliers.	94.86
smart00369	26	LRR_TYP Leucine-rich repeats, typical (most popula	94.86
smart00370	26	LRR Leucine-rich repeats, outliers.	94.62
smart00369	26	LRR_TYP Leucine-rich repeats, typical (most popula	94.62
KOG2739	260	consensus Leucine-rich acidic nuclear protein [Cel	94.6
KOG1644	233	consensus U2-associated snRNP A' protein [RNA proc	94.47
KOG2982	418	consensus Uncharacterized conserved protein [Funct	94.02
KOG2123	388	consensus Uncharacterized conserved protein [Funct	93.21
PF13306	129	LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_	92.03
smart00364	26	LRR_BAC Leucine-rich repeats, bacterial type.	90.47
PF13306	129	LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_	90.28
KOG0473	326	consensus Leucine-rich repeat protein [Function un	90.22
KOG0473	326	consensus Leucine-rich repeat protein [Function un	88.46
KOG2120	419	consensus SCF ubiquitin ligase, Skp2 component [Po	84.7
KOG2120	419	consensus SCF ubiquitin ligase, Skp2 component [Po	84.45
COG5238	388	RNA1 Ran GTPase-activating protein (RanGAP) involv	84.32
smart00365	26	LRR_SD22 Leucine-rich repeat, SDS22-like subfamily	80.1

>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]

Probab=100.00  E-value=3e-43  Score=333.71  Aligned_cols=234  Identities=27%  Similarity=0.364  Sum_probs=200.3

Q ss_pred             hhHHHhhcccCCC----CCC-CcchHHHHHHhHhhhhHHHHHHHHHhhcCCCCceecHHHHHHHHHHcCCCCCCc-----
Q 037304            8 RNYLFVLDRKFVP----VEA-LDEPRGLQVVAYCMLLFYLKLCCLYLSVFPVHFEISTKQLYQLWIAEGFIPNNN-----   77 (257)
Q Consensus         8 ~~W~~~l~~~~~~----~~~-~~~i~~~L~lSY~~L~~~lk~cfl~~a~Fp~~~~i~~~~Li~~Wiaeg~i~~~~-----   77 (257)
                      ++|+++.+...+.    .++ .+.|+++|++|||+||+++|.||||||+|||||+|+++.||.+||||||+.+..     
T Consensus       373 ~eW~~~~~~l~s~~~~~~~~~~~~i~~iLklSyd~L~~~lK~CFLycalFPED~~I~~e~Li~yWiaEGfi~~~~~~~~~  452 (889)
T KOG4658|consen  373 QEWRRALNVLKSSLAADFSGMEESILPILKLSYDNLPEELKSCFLYCALFPEDYEIKKEKLIEYWIAEGFIDPLDGGETA  452 (889)
T ss_pred             HHHHHHHccccccccCCCCchhhhhHHhhhccHhhhhHHHHHHHHhhccCCcccccchHHHHHHHHhccCcCccccccch
Confidence            4899999976444    222 357999999999999999999999999999999999999999999999998843     


Q ss_pred             HHHHHHHHHHHHHCCCccceecCCCCCeeEEEeChhHHHHHHHhhc-----cCCeeeceecCC------CCCccCcEEEE
Q 037304           78 EATAERYLEQLINAGFVDAGKRSDRGRINTGFIPGRCSPALLTVAF-----EGEFVISPIMDQ------EVKLWENVKRF  146 (257)
Q Consensus        78 ~~~~~~~~~~L~~r~li~~~~~~~~g~~~~~~mHdl~~dl~~~i~~-----~e~~~~~~~~~~------~~~~~~~~r~L  146 (257)
                      ++.|+.|+++|+++||++..+..  ++..+|+|||+|||+|.++|+     +++.+.  ..+.      +..+|..+|++
T Consensus       453 ~d~G~~~i~~LV~~~Ll~~~~~~--~~~~~~kmHDvvRe~al~ias~~~~~~e~~iv--~~~~~~~~~~~~~~~~~~rr~  528 (889)
T KOG4658|consen  453 EDVGYDYIEELVRASLLIEERDE--GRKETVKMHDVVREMALWIASDFGKQEENQIV--SDGVGLSEIPQVKSWNSVRRM  528 (889)
T ss_pred             hcchHHHHHHHHHHHHHhhcccc--cceeEEEeeHHHHHHHHHHhccccccccceEE--ECCcCccccccccchhheeEE
Confidence            89999999999999999987754  667899999999999999999     676544  2221      11223788999


Q ss_pred             EEeCCCCcc-ccccCCCCCccEEEeecCCCCCCCcccchHhhccCcccceEEEeCCC-CccCchhcCCCCCCcEEEccCC
Q 037304          147 TAHGNLNDF-AFLDHFDSFLHSLLHLTSGSHYLNPTYCEKICKMFKFLRVLDLGSLV-LIRYPFEIENLFLLRYLHLNIP  224 (257)
Q Consensus       147 ~~~~~~~~~-~~~~~~~~~Lrsl~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~-l~~lp~~i~~L~~L~~L~l~~~  224 (257)
                      +++++.... +.....+ +++||.+..+...  .......+|..|+.||||||++|. +.++|++|++|.|||||++++|
T Consensus       529 s~~~~~~~~~~~~~~~~-~L~tLll~~n~~~--l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t  605 (889)
T KOG4658|consen  529 SLMNNKIEHIAGSSENP-KLRTLLLQRNSDW--LLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDT  605 (889)
T ss_pred             EEeccchhhccCCCCCC-ccceEEEeecchh--hhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccCC
Confidence            999998765 5666777 8999999987531  234667889999999999999887 8899999999999999999999


Q ss_pred             CccccchhHHhcCccccEeeccCCC
Q 037304          225 SLKSLPSSLLNSLLNLYTLDKPFSY  249 (257)
Q Consensus       225 ~l~~lP~~i~~~L~~L~~L~l~~~~  249 (257)
                      .++.||.++ ++|..|++|++..+.
T Consensus       606 ~I~~LP~~l-~~Lk~L~~Lnl~~~~  629 (889)
T KOG4658|consen  606 GISHLPSGL-GNLKKLIYLNLEVTG  629 (889)
T ss_pred             CccccchHH-HHHHhhheecccccc
Confidence            999999999 999999999999876

>PLN03210 Resistant to P

Probab=99.88  E-value=4.6e-22  Score=196.94  Aligned_cols=102  Identities=10%  Similarity=-0.036  Sum_probs=81.2

Q ss_pred             chhhHHHhhcccCCCCCCCcchHHHHHHhHhhhhH-HHHHHHHHhhcCCCCceecHHHHHHHHHHcCCCCCCcHHHHHHH
Q 037304            6 VRRNYLFVLDRKFVPVEALDEPRGLQVVAYCMLLF-YLKLCCLYLSVFPVHFEISTKQLYQLWIAEGFIPNNNEATAERY   84 (257)
Q Consensus         6 ~~~~W~~~l~~~~~~~~~~~~i~~~L~lSY~~L~~-~lk~cfl~~a~Fp~~~~i~~~~Li~~Wiaeg~i~~~~~~~~~~~   84 (257)
                      .+++|+.++++..+  ....+|.++|++||++|++ ..|.||+|||+||.+..++   .+..|+|.+....      +..
T Consensus       403 ~~~~W~~~l~~L~~--~~~~~I~~~L~~SYd~L~~~~~k~~Fl~ia~ff~~~~~~---~v~~~l~~~~~~~------~~~  471 (1153)
T PLN03210        403 DKEDWMDMLPRLRN--GLDGKIEKTLRVSYDGLNNKKDKAIFRHIACLFNGEKVN---DIKLLLANSDLDV------NIG  471 (1153)
T ss_pred             CHHHHHHHHHHHHh--CccHHHHHHHHHhhhccCccchhhhhheehhhcCCCCHH---HHHHHHHhcCCCc------hhC
Confidence            46899999998632  2235899999999999987 5999999999999987553   4667777765432      234


Q ss_pred             HHHHHHCCCccceecCCCCCeeEEEeChhHHHHHHHhhccC
Q 037304           85 LEQLINAGFVDAGKRSDRGRINTGFIPGRCSPALLTVAFEG  125 (257)
Q Consensus        85 ~~~L~~r~li~~~~~~~~g~~~~~~mHdl~~dl~~~i~~~e  125 (257)
                      ++.|+++|||+...       ..++|||++|+||+.+++++
T Consensus       472 l~~L~~ksLi~~~~-------~~~~MHdLl~~~~r~i~~~~  505 (1153)
T PLN03210        472 LKNLVDKSLIHVRE-------DIVEMHSLLQEMGKEIVRAQ  505 (1153)
T ss_pred             hHHHHhcCCEEEcC-------CeEEhhhHHHHHHHHHHHhh
Confidence            89999999998743       35899999999999999765

syringae 6; Provisional

>PF00931 NB-ARC: NB-ARC domain; InterPro: IPR002182 This is the NB-ARC domain, a novel signalling motif found in bacteria and eukaryotes, shared by plant resistance gene products and regulators of cell death in animals []

Probab=99.15  E-value=8.2e-12  Score=106.18  Aligned_cols=70  Identities=29%  Similarity=0.422  Sum_probs=56.7

Q ss_pred             hhhHHHhhcccCCCCC----CCcchHHHHHHhHhhhhHHHHHHHHHhhcCCCCceecHHHHHHHHHHcCCCCCC
Q 037304            7 RRNYLFVLDRKFVPVE----ALDEPRGLQVVAYCMLLFYLKLCCLYLSVFPVHFEISTKQLYQLWIAEGFIPNN   76 (257)
Q Consensus         7 ~~~W~~~l~~~~~~~~----~~~~i~~~L~lSY~~L~~~lk~cfl~~a~Fp~~~~i~~~~Li~~Wiaeg~i~~~   76 (257)
                      .++|+.+++...+...    ....+..++.+||+.||+++|.||+|||+||+++.|+++.|+++|++||||.+.
T Consensus       212 ~~~w~~~~~~l~~~~~~~~~~~~~~~~~l~~s~~~L~~~~~~~f~~L~~f~~~~~i~~~~li~lW~~e~~i~~~  285 (287)
T PF00931_consen  212 VDEWEEALEELENSLRESRDYDRSVFSALELSYDSLPDELRRCFLYLSIFPEGVPIPRERLIRLWVAEGFISSK  285 (287)
T ss_dssp             SSSHHHHHHHHHHCHTCSSGSCHHHHHHHHHHHHSSHTCCHHHHHHGGGSGTTS-EEHHHHHHHHTT-HHTC--
T ss_pred             ccccccccccccccccccccccccccccceechhcCCccHHHHHhhCcCCCCCceECHHHHHHHHHHCCCCccc
Confidence            4679988875422221    246799999999999999999999999999999999999999999999999764

This domain has been structurally characterised in the human protein apoptotic protease-activating factor 1 (Apaf-1) []. It contains the three-layered alpha-beta fold and subsequent short alpha-helical region characteristic of the AAA+ ATPase domain superfamily. While this domain is thought to bind and hyrolyse ATP, only ADP binding has been experimentally verified. It is proposed that binding and hydrolysis of ATP by this domain induces conformational changes the the overall protein, leading to formation of the apoptosome.; GO: 0043531 ADP binding; PDB: 3IZA_E 1Z6T_D 3SFZ_A 3SHF_A 1VT4_M 3IZ8_G 3LQR_A 2A5Y_C 3LQQ_A.

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=98.93  E-value=9e-10  Score=71.34  Aligned_cols=60  Identities=32%  Similarity=0.328  Sum_probs=53.5

Q ss_pred             cccceEEEeCCCCccCc-hhcCCCCCCcEEEccCCCccccchhHHhcCccccEeeccCCCC
Q 037304          191 KFLRVLDLGSLVLIRYP-FEIENLFLLRYLHLNIPSLKSLPSSLLNSLLNLYTLDKPFSYI  250 (257)
Q Consensus       191 ~~Lr~L~L~~~~l~~lp-~~i~~L~~L~~L~l~~~~l~~lP~~i~~~L~~L~~L~l~~~~l  250 (257)
                      ++|++|++++|.+..+| ..+..+++|++|++++|.++.+|+..|..+++|++|++++|++
T Consensus         1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l   61 (61)
T PF13855_consen    1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL   61 (61)
T ss_dssp             TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred             CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence            46899999999999887 5778899999999999999999886669999999999999874

...

>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]

Probab=98.92  E-value=1.2e-10  Score=89.58  Aligned_cols=92  Identities=22%  Similarity=0.094  Sum_probs=53.8

Q ss_pred             cccCCCCCccEEEeecCCCCCCCcccchHhhccCcccceEEEeCCCCc--cCchhcCCCCCCcEEEccCCCccccchhHH
Q 037304          157 FLDHFDSFLHSLLHLTSGSHYLNPTYCEKICKMFKFLRVLDLGSLVLI--RYPFEIENLFLLRYLHLNIPSLKSLPSSLL  234 (257)
Q Consensus       157 ~~~~~~~~Lrsl~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~l~--~lp~~i~~L~~L~~L~l~~~~l~~lP~~i~  234 (257)
                      ....++ +||.|.+..+..     ...|..|+.++.|++|||..|.+.  .+|..+..|.-||.|.|+.|.++-+|+.+ 
T Consensus        74 ~issl~-klr~lnvgmnrl-----~~lprgfgs~p~levldltynnl~e~~lpgnff~m~tlralyl~dndfe~lp~dv-  146 (264)
T KOG0617|consen   74 SISSLP-KLRILNVGMNRL-----NILPRGFGSFPALEVLDLTYNNLNENSLPGNFFYMTTLRALYLGDNDFEILPPDV-  146 (264)
T ss_pred             hhhhch-hhhheecchhhh-----hcCccccCCCchhhhhhccccccccccCCcchhHHHHHHHHHhcCCCcccCChhh-
Confidence            334555 666665544433     356777888888888888876654  44555444444444455555555555555 


Q ss_pred             hcCccccEeeccCCCCCcCCC
Q 037304          235 NSLLNLYTLDKPFSYIDHTVD  255 (257)
Q Consensus       235 ~~L~~L~~L~l~~~~l~~lP~  255 (257)
                      |+|.+||.|.+++|.+-++|.
T Consensus       147 g~lt~lqil~lrdndll~lpk  167 (264)
T KOG0617|consen  147 GKLTNLQILSLRDNDLLSLPK  167 (264)
T ss_pred             hhhcceeEEeeccCchhhCcH
Confidence            555555555555555555554

>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]

Probab=98.85  E-value=1.6e-10  Score=88.88  Aligned_cols=112  Identities=21%  Similarity=0.131  Sum_probs=94.8

Q ss_pred             CcEEEEEEeCCCCcc--ccccCCCCCccEEEeecCCCCCCCcccchHhhccCcccceEEEeCCCCccCchhcCCCCCCcE
Q 037304          141 ENVKRFTAHGNLNDF--AFLDHFDSFLHSLLHLTSGSHYLNPTYCEKICKMFKFLRVLDLGSLVLIRYPFEIENLFLLRY  218 (257)
Q Consensus       141 ~~~r~L~~~~~~~~~--~~~~~~~~~Lrsl~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~l~~lp~~i~~L~~L~~  218 (257)
                      .++|++-+.-+....  .....++ .|..|.+..+..   ....+|..|-.|..||.|.|+.|.++-+|..+++|++|+.
T Consensus        79 ~klr~lnvgmnrl~~lprgfgs~p-~levldltynnl---~e~~lpgnff~m~tlralyl~dndfe~lp~dvg~lt~lqi  154 (264)
T KOG0617|consen   79 PKLRILNVGMNRLNILPRGFGSFP-ALEVLDLTYNNL---NENSLPGNFFYMTTLRALYLGDNDFEILPPDVGKLTNLQI  154 (264)
T ss_pred             hhhhheecchhhhhcCccccCCCc-hhhhhhcccccc---ccccCCcchhHHHHHHHHHhcCCCcccCChhhhhhcceeE
Confidence            667777666555443  2445677 888888877665   4566778888899999999999999999999999999999


Q ss_pred             EEccCCCccccchhHHhcCccccEeeccCCCCCcCCCCC
Q 037304          219 LHLNIPSLKSLPSSLLNSLLNLYTLDKPFSYIDHTVDEF  257 (257)
Q Consensus       219 L~l~~~~l~~lP~~i~~~L~~L~~L~l~~~~l~~lP~~i  257 (257)
                      |.++.|.+-++|..+ |.|..|+.|.+.+|+++.+|+++
T Consensus       155 l~lrdndll~lpkei-g~lt~lrelhiqgnrl~vlppel  192 (264)
T KOG0617|consen  155 LSLRDNDLLSLPKEI-GDLTRLRELHIQGNRLTVLPPEL  192 (264)
T ss_pred             EeeccCchhhCcHHH-HHHHHHHHHhcccceeeecChhh
Confidence            999999999999999 99999999999999999999863

>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]

Probab=98.78  E-value=6.3e-10  Score=100.64  Aligned_cols=111  Identities=20%  Similarity=0.161  Sum_probs=63.5

Q ss_pred             CcEEEEEEeCCCCcc--ccccCCCCCccEEEeecCCCCCCCcccchHhhccCcccceEEEeCCCCccCchhcCCCCCCcE
Q 037304          141 ENVKRFTAHGNLNDF--AFLDHFDSFLHSLLHLTSGSHYLNPTYCEKICKMFKFLRVLDLGSLVLIRYPFEIENLFLLRY  218 (257)
Q Consensus       141 ~~~r~L~~~~~~~~~--~~~~~~~~~Lrsl~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~l~~lp~~i~~L~~L~~  218 (257)
                      .++.||++..+....  -+..+++ .||++++..+...  ..+++ +-+-.++.|.+|||+.|++.+.|..+..-+++-.
T Consensus        55 qkLEHLs~~HN~L~~vhGELs~Lp-~LRsv~~R~N~LK--nsGiP-~diF~l~dLt~lDLShNqL~EvP~~LE~AKn~iV  130 (1255)
T KOG0444|consen   55 QKLEHLSMAHNQLISVHGELSDLP-RLRSVIVRDNNLK--NSGIP-TDIFRLKDLTILDLSHNQLREVPTNLEYAKNSIV  130 (1255)
T ss_pred             hhhhhhhhhhhhhHhhhhhhccch-hhHHHhhhccccc--cCCCC-chhcccccceeeecchhhhhhcchhhhhhcCcEE
Confidence            445556555554332  3455666 7777776665543  22333 3333566666666666666666666666666666


Q ss_pred             EEccCCCccccchhHHhcCccccEeeccCCCCCcCCC
Q 037304          219 LHLNIPSLKSLPSSLLNSLLNLYTLDKPFSYIDHTVD  255 (257)
Q Consensus       219 L~l~~~~l~~lP~~i~~~L~~L~~L~l~~~~l~~lP~  255 (257)
                      |+||+|+|+++|.++|-+|.-|-.|||++|++..||+
T Consensus       131 LNLS~N~IetIPn~lfinLtDLLfLDLS~NrLe~LPP  167 (1255)
T KOG0444|consen  131 LNLSYNNIETIPNSLFINLTDLLFLDLSNNRLEMLPP  167 (1255)
T ss_pred             EEcccCccccCCchHHHhhHhHhhhccccchhhhcCH
Confidence            6666666666666554555666666666665555554

>PLN03150 hypothetical protein; Provisional

Probab=98.60  E-value=7.5e-08  Score=90.44  Aligned_cols=86  Identities=19%  Similarity=0.228  Sum_probs=64.7

Q ss_pred             ccEEEeecCCCCCCCcccchHhhccCcccceEEEeCCCCc-cCchhcCCCCCCcEEEccCCCcc-ccchhHHhcCccccE
Q 037304          165 LHSLLHLTSGSHYLNPTYCEKICKMFKFLRVLDLGSLVLI-RYPFEIENLFLLRYLHLNIPSLK-SLPSSLLNSLLNLYT  242 (257)
Q Consensus       165 Lrsl~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~l~-~lp~~i~~L~~L~~L~l~~~~l~-~lP~~i~~~L~~L~~  242 (257)
                      ++.|.+.++..    ....+..+..+++|+.|+|++|.+. .+|..++.+++|++|+|++|.+. .+|+++ ++|.+|++
T Consensus       420 v~~L~L~~n~L----~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l-~~L~~L~~  494 (623)
T PLN03150        420 IDGLGLDNQGL----RGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESL-GQLTSLRI  494 (623)
T ss_pred             EEEEECCCCCc----cccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHH-hcCCCCCE
Confidence            45555555443    2345667788888888888888876 77888888888888888888876 678888 88888888


Q ss_pred             eeccCCCCC-cCCC
Q 037304          243 LDKPFSYID-HTVD  255 (257)
Q Consensus       243 L~l~~~~l~-~lP~  255 (257)
                      |+|++|.+. .+|.
T Consensus       495 L~Ls~N~l~g~iP~  508 (623)
T PLN03150        495 LNLNGNSLSGRVPA  508 (623)
T ss_pred             EECcCCcccccCCh
Confidence            888888755 6665

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=98.60  E-value=8.9e-08  Score=94.53  Aligned_cols=66  Identities=23%  Similarity=0.358  Sum_probs=35.0

Q ss_pred             hHhhccCcccceEEEeCCCCc-cCchhcCCCCCCcEEEccCCCcc-ccchhHHhcCccccEeeccCCCC
Q 037304          184 EKICKMFKFLRVLDLGSLVLI-RYPFEIENLFLLRYLHLNIPSLK-SLPSSLLNSLLNLYTLDKPFSYI  250 (257)
Q Consensus       184 ~~~~~~l~~Lr~L~L~~~~l~-~lp~~i~~L~~L~~L~l~~~~l~-~lP~~i~~~L~~L~~L~l~~~~l  250 (257)
                      |..+.++++|++|++++|.+. .+|..++++++|++|++++|.+. .+|..+ +++.+|++|++++|.+
T Consensus       181 p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l-~~l~~L~~L~L~~n~l  248 (968)
T PLN00113        181 PNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEI-GGLTSLNHLDLVYNNL  248 (968)
T ss_pred             ChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEECcCCccCCcCChhH-hcCCCCCEEECcCcee
Confidence            344455555555555555543 34555555555555555555543 455555 5555555555555553

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=98.55  E-value=6.1e-08  Score=58.19  Aligned_cols=38  Identities=32%  Similarity=0.341  Sum_probs=17.9

Q ss_pred             CCcEEEccCCCccccchhHHhcCccccEeeccCCCCCcC
Q 037304          215 LLRYLHLNIPSLKSLPSSLLNSLLNLYTLDKPFSYIDHT  253 (257)
Q Consensus       215 ~L~~L~l~~~~l~~lP~~i~~~L~~L~~L~l~~~~l~~l  253 (257)
                      +|++|++++|.++.+|+.+ ++|++|++|++++|++.++
T Consensus         2 ~L~~L~l~~N~i~~l~~~l-~~l~~L~~L~l~~N~i~~i   39 (44)
T PF12799_consen    2 NLEELDLSNNQITDLPPEL-SNLPNLETLNLSNNPISDI   39 (44)
T ss_dssp             T-SEEEETSSS-SSHGGHG-TTCTTSSEEEETSSCCSBE
T ss_pred             cceEEEccCCCCcccCchH-hCCCCCCEEEecCCCCCCC
Confidence            4445555555555555444 5555555555555544443

...

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=98.54  E-value=1.5e-07  Score=92.95  Aligned_cols=81  Identities=26%  Similarity=0.288  Sum_probs=37.6

Q ss_pred             CccEEEeecCCCCCCCcccchHhhccCcccceEEEeCCCCc-cCchhcCCCCCCcEEEccCCCcc-ccchhHHhcCcccc
Q 037304          164 FLHSLLHLTSGSHYLNPTYCEKICKMFKFLRVLDLGSLVLI-RYPFEIENLFLLRYLHLNIPSLK-SLPSSLLNSLLNLY  241 (257)
Q Consensus       164 ~Lrsl~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~l~-~lp~~i~~L~~L~~L~l~~~~l~-~lP~~i~~~L~~L~  241 (257)
                      +|++|.+.++...    ...+..+..+++|++|++++|.+. .+|..++++++|++|++++|.+. .+|..+ +++.+|+
T Consensus       141 ~L~~L~Ls~n~~~----~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l-~~l~~L~  215 (968)
T PLN00113        141 NLETLDLSNNMLS----GEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPREL-GQMKSLK  215 (968)
T ss_pred             CCCEEECcCCccc----ccCChHHhcCCCCCEEECccCcccccCChhhhhCcCCCeeeccCCCCcCcCChHH-cCcCCcc
Confidence            4555544444321    123344444555555555554433 34444555555555555544432 344444 5555555


Q ss_pred             EeeccCCC
Q 037304          242 TLDKPFSY  249 (257)
Q Consensus       242 ~L~l~~~~  249 (257)
                      +|++++|.
T Consensus       216 ~L~L~~n~  223 (968)
T PLN00113        216 WIYLGYNN  223 (968)
T ss_pred             EEECcCCc
Confidence            55555444

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=98.50  E-value=1.6e-07  Score=56.32  Aligned_cols=41  Identities=29%  Similarity=0.340  Sum_probs=35.9

Q ss_pred             cccceEEEeCCCCccCchhcCCCCCCcEEEccCCCccccch
Q 037304          191 KFLRVLDLGSLVLIRYPFEIENLFLLRYLHLNIPSLKSLPS  231 (257)
Q Consensus       191 ~~Lr~L~L~~~~l~~lp~~i~~L~~L~~L~l~~~~l~~lP~  231 (257)
                      ++|++|++++|+++.+|..+++|++|++|++++|.++.+|.
T Consensus         1 ~~L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~N~i~~i~~   41 (44)
T PF12799_consen    1 KNLEELDLSNNQITDLPPELSNLPNLETLNLSNNPISDISP   41 (44)
T ss_dssp             TT-SEEEETSSS-SSHGGHGTTCTTSSEEEETSSCCSBEGG
T ss_pred             CcceEEEccCCCCcccCchHhCCCCCCEEEecCCCCCCCcC
Confidence            47899999999999999999999999999999999987764

...

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=98.40  E-value=3.6e-07  Score=58.96  Aligned_cols=59  Identities=29%  Similarity=0.202  Sum_probs=51.5

Q ss_pred             CccEEEeecCCCCCCCcccchHhhccCcccceEEEeCCCCccCc-hhcCCCCCCcEEEccCCCc
Q 037304          164 FLHSLLHLTSGSHYLNPTYCEKICKMFKFLRVLDLGSLVLIRYP-FEIENLFLLRYLHLNIPSL  226 (257)
Q Consensus       164 ~Lrsl~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~l~~lp-~~i~~L~~L~~L~l~~~~l  226 (257)
                      +|++|.+.++..    ..+.+..|.++++|++|++++|.+..+| ..+..+++|++|++++|++
T Consensus         2 ~L~~L~l~~n~l----~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l   61 (61)
T PF13855_consen    2 NLESLDLSNNKL----TEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL   61 (61)
T ss_dssp             TESEEEETSSTE----SEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred             cCcEEECCCCCC----CccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence            788898888764    3567789999999999999999999886 6789999999999999875

...

>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]

Probab=98.38  E-value=4.4e-08  Score=88.99  Aligned_cols=72  Identities=24%  Similarity=0.113  Sum_probs=40.5

Q ss_pred             chHhhccCcccceEEEeCCCCccCchhcCCCCCCcEEEccCCCccccchhHHhcCccccEeeccCCCCCcCCC
Q 037304          183 CEKICKMFKFLRVLDLGSLVLIRYPFEIENLFLLRYLHLNIPSLKSLPSSLLNSLLNLYTLDKPFSYIDHTVD  255 (257)
Q Consensus       183 ~~~~~~~l~~Lr~L~L~~~~l~~lp~~i~~L~~L~~L~l~~~~l~~lP~~i~~~L~~L~~L~l~~~~l~~lP~  255 (257)
                      +|.++..+.+|+-+||+.|.++.+|+.+.++.+||.|+||+|.+++|-..+ +.-.+|++|+++.|++..||+
T Consensus       214 ~Ptsld~l~NL~dvDlS~N~Lp~vPecly~l~~LrrLNLS~N~iteL~~~~-~~W~~lEtLNlSrNQLt~LP~  285 (1255)
T KOG0444|consen  214 IPTSLDDLHNLRDVDLSENNLPIVPECLYKLRNLRRLNLSGNKITELNMTE-GEWENLETLNLSRNQLTVLPD  285 (1255)
T ss_pred             CCCchhhhhhhhhccccccCCCcchHHHhhhhhhheeccCcCceeeeeccH-HHHhhhhhhccccchhccchH
Confidence            345555566666666666666666666666666666666665555554444 444445555555544444443

>KOG0472 consensus Leucine-rich repeat protein [Function unknown]

Probab=98.38  E-value=2.6e-08  Score=85.98  Aligned_cols=66  Identities=33%  Similarity=0.234  Sum_probs=45.2

Q ss_pred             chHhhccCcccceEEEeCCCCccCchhcCCCCCCcEEEccCCCccccchhHHhcCccccEeeccCCCC
Q 037304          183 CEKICKMFKFLRVLDLGSLVLIRYPFEIENLFLLRYLHLNIPSLKSLPSSLLNSLLNLYTLDKPFSYI  250 (257)
Q Consensus       183 ~~~~~~~l~~Lr~L~L~~~~l~~lp~~i~~L~~L~~L~l~~~~l~~lP~~i~~~L~~L~~L~l~~~~l  250 (257)
                      +.+..+.+.+|.+|||..|+++++|+.++.|.+|.+||+++|.++.+|.++ |+| +|+.|-+.||.+
T Consensus       244 pae~~~~L~~l~vLDLRdNklke~Pde~clLrsL~rLDlSNN~is~Lp~sL-gnl-hL~~L~leGNPl  309 (565)
T KOG0472|consen  244 PAEHLKHLNSLLVLDLRDNKLKEVPDEICLLRSLERLDLSNNDISSLPYSL-GNL-HLKFLALEGNPL  309 (565)
T ss_pred             HHHHhcccccceeeeccccccccCchHHHHhhhhhhhcccCCccccCCccc-ccc-eeeehhhcCCch
Confidence            344555667777777777777777777777777777777777777777777 776 777776666654

>KOG0472 consensus Leucine-rich repeat protein [Function unknown]

Probab=98.36  E-value=2.5e-08  Score=86.06  Aligned_cols=93  Identities=22%  Similarity=0.147  Sum_probs=74.1

Q ss_pred             cccCCCCCccEEEeecCCCCCCCcccchHhhccCcccceEEEeCCCCccCchhcC-CCCCCcEEEccCCCccccchhHHh
Q 037304          157 FLDHFDSFLHSLLHLTSGSHYLNPTYCEKICKMFKFLRVLDLGSLVLIRYPFEIE-NLFLLRYLHLNIPSLKSLPSSLLN  235 (257)
Q Consensus       157 ~~~~~~~~Lrsl~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~l~~lp~~i~-~L~~L~~L~l~~~~l~~lP~~i~~  235 (257)
                      +...+. .+.-|.+..+..     .+.| .|.++..|.-|+++.|+++.+|..++ .|.+|..||++.|.+++.|..+ +
T Consensus       201 ~lg~l~-~L~~LyL~~Nki-----~~lP-ef~gcs~L~Elh~g~N~i~~lpae~~~~L~~l~vLDLRdNklke~Pde~-c  272 (565)
T KOG0472|consen  201 ELGGLE-SLELLYLRRNKI-----RFLP-EFPGCSLLKELHVGENQIEMLPAEHLKHLNSLLVLDLRDNKLKEVPDEI-C  272 (565)
T ss_pred             hhcchh-hhHHHHhhhccc-----ccCC-CCCccHHHHHHHhcccHHHhhHHHHhcccccceeeeccccccccCchHH-H
Confidence            334444 454444444443     2343 67888888888888888888998877 7999999999999999999999 9


Q ss_pred             cCccccEeeccCCCCCcCCCCC
Q 037304          236 SLLNLYTLDKPFSYIDHTVDEF  257 (257)
Q Consensus       236 ~L~~L~~L~l~~~~l~~lP~~i  257 (257)
                      .|++|..||+++|.+..+|.++
T Consensus       273 lLrsL~rLDlSNN~is~Lp~sL  294 (565)
T KOG0472|consen  273 LLRSLERLDLSNNDISSLPYSL  294 (565)
T ss_pred             HhhhhhhhcccCCccccCCccc
Confidence            9999999999999999999753

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=98.34  E-value=4.5e-07  Score=71.26  Aligned_cols=102  Identities=21%  Similarity=0.123  Sum_probs=31.0

Q ss_pred             EEEEEEeCCCCccc-ccc-CCCCCccEEEeecCCCCCCCcccchHhhccCcccceEEEeCCCCccCchhcC-CCCCCcEE
Q 037304          143 VKRFTAHGNLNDFA-FLD-HFDSFLHSLLHLTSGSHYLNPTYCEKICKMFKFLRVLDLGSLVLIRYPFEIE-NLFLLRYL  219 (257)
Q Consensus       143 ~r~L~~~~~~~~~~-~~~-~~~~~Lrsl~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~l~~lp~~i~-~L~~L~~L  219 (257)
                      .|.|.+.++..... ... .+. ++++|.+.++....    +  +.+..++.|+.|++++|.++.+++.+. .+++|+.|
T Consensus        21 ~~~L~L~~n~I~~Ie~L~~~l~-~L~~L~Ls~N~I~~----l--~~l~~L~~L~~L~L~~N~I~~i~~~l~~~lp~L~~L   93 (175)
T PF14580_consen   21 LRELNLRGNQISTIENLGATLD-KLEVLDLSNNQITK----L--EGLPGLPRLKTLDLSNNRISSISEGLDKNLPNLQEL   93 (175)
T ss_dssp             ---------------S--TT-T-T--EEE-TTS--S--------TT----TT--EEE--SS---S-CHHHHHH-TT--EE
T ss_pred             cccccccccccccccchhhhhc-CCCEEECCCCCCcc----c--cCccChhhhhhcccCCCCCCccccchHHhCCcCCEE
Confidence            45555655554432 222 245 66677666665531    1  345556677777777777766654442 46677777


Q ss_pred             EccCCCccccc--hhHHhcCccccEeeccCCCCCc
Q 037304          220 HLNIPSLKSLP--SSLLNSLLNLYTLDKPFSYIDH  252 (257)
Q Consensus       220 ~l~~~~l~~lP--~~i~~~L~~L~~L~l~~~~l~~  252 (257)
                      .+++|.+..+-  ..+ ..+++|++|++.+|.+.+
T Consensus        94 ~L~~N~I~~l~~l~~L-~~l~~L~~L~L~~NPv~~  127 (175)
T PF14580_consen   94 YLSNNKISDLNELEPL-SSLPKLRVLSLEGNPVCE  127 (175)
T ss_dssp             E-TTS---SCCCCGGG-GG-TT--EEE-TT-GGGG
T ss_pred             ECcCCcCCChHHhHHH-HcCCCcceeeccCCcccc
Confidence            77776665432  234 566677777777665543

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=98.32  E-value=5.3e-07  Score=70.83  Aligned_cols=88  Identities=20%  Similarity=0.124  Sum_probs=31.6

Q ss_pred             ccCCCCCccEEEeecCCCCCCCcccchHhhc-cCcccceEEEeCCCCccCchhcCCCCCCcEEEccCCCccccchhHHhc
Q 037304          158 LDHFDSFLHSLLHLTSGSHYLNPTYCEKICK-MFKFLRVLDLGSLVLIRYPFEIENLFLLRYLHLNIPSLKSLPSSLLNS  236 (257)
Q Consensus       158 ~~~~~~~Lrsl~l~~~~~~~~~~~~~~~~~~-~l~~Lr~L~L~~~~l~~lp~~i~~L~~L~~L~l~~~~l~~lP~~i~~~  236 (257)
                      ..+.. ++|.|.+.++....     + +.+. .+.+|++|+|++|.++.++ .+..+++|+.|++++|.++.+++.+...
T Consensus        15 ~~n~~-~~~~L~L~~n~I~~-----I-e~L~~~l~~L~~L~Ls~N~I~~l~-~l~~L~~L~~L~L~~N~I~~i~~~l~~~   86 (175)
T PF14580_consen   15 YNNPV-KLRELNLRGNQIST-----I-ENLGATLDKLEVLDLSNNQITKLE-GLPGLPRLKTLDLSNNRISSISEGLDKN   86 (175)
T ss_dssp             ----------------------------S--TT-TT--EEE-TTS--S--T-T----TT--EEE--SS---S-CHHHHHH
T ss_pred             ccccc-cccccccccccccc-----c-cchhhhhcCCCEEECCCCCCcccc-CccChhhhhhcccCCCCCCccccchHHh
Confidence            33445 78889998887741     1 2344 5788999999999999886 4888999999999999999998766246


Q ss_pred             CccccEeeccCCCCCcC
Q 037304          237 LLNLYTLDKPFSYIDHT  253 (257)
Q Consensus       237 L~~L~~L~l~~~~l~~l  253 (257)
                      +++|+.|++++|++.++
T Consensus        87 lp~L~~L~L~~N~I~~l  103 (175)
T PF14580_consen   87 LPNLQELYLSNNKISDL  103 (175)
T ss_dssp             -TT--EEE-TTS---SC
T ss_pred             CCcCCEEECcCCcCCCh
Confidence            99999999999987655

>PLN03150 hypothetical protein; Provisional

Probab=98.27  E-value=3.2e-06  Score=79.55  Aligned_cols=106  Identities=18%  Similarity=0.117  Sum_probs=83.1

Q ss_pred             EEEEEEeCCCCc--c-ccccCCCCCccEEEeecCCCCCCCcccchHhhccCcccceEEEeCCCCc-cCchhcCCCCCCcE
Q 037304          143 VKRFTAHGNLND--F-AFLDHFDSFLHSLLHLTSGSHYLNPTYCEKICKMFKFLRVLDLGSLVLI-RYPFEIENLFLLRY  218 (257)
Q Consensus       143 ~r~L~~~~~~~~--~-~~~~~~~~~Lrsl~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~l~-~lp~~i~~L~~L~~  218 (257)
                      +..|.+..+...  . .....+. +|+.|.+.++...    ...|..+..+++|+.|+|++|.+. .+|..+++|++|++
T Consensus       420 v~~L~L~~n~L~g~ip~~i~~L~-~L~~L~Ls~N~l~----g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~  494 (623)
T PLN03150        420 IDGLGLDNQGLRGFIPNDISKLR-HLQSINLSGNSIR----GNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRI  494 (623)
T ss_pred             EEEEECCCCCccccCCHHHhCCC-CCCEEECCCCccc----CcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCE
Confidence            445555554433  1 3455678 9999999888653    456778999999999999999988 78999999999999


Q ss_pred             EEccCCCcc-ccchhHHhcC-ccccEeeccCCC-CCcCC
Q 037304          219 LHLNIPSLK-SLPSSLLNSL-LNLYTLDKPFSY-IDHTV  254 (257)
Q Consensus       219 L~l~~~~l~-~lP~~i~~~L-~~L~~L~l~~~~-l~~lP  254 (257)
                      |+|++|.+. .+|..+ +.+ .++..+++.+|. +...|
T Consensus       495 L~Ls~N~l~g~iP~~l-~~~~~~~~~l~~~~N~~lc~~p  532 (623)
T PLN03150        495 LNLNGNSLSGRVPAAL-GGRLLHRASFNFTDNAGLCGIP  532 (623)
T ss_pred             EECcCCcccccCChHH-hhccccCceEEecCCccccCCC
Confidence            999999976 899998 764 578899998876 44443

>PLN03210 Resistant to P

Probab=98.19  E-value=3.9e-06  Score=84.33  Aligned_cols=61  Identities=28%  Similarity=0.341  Sum_probs=30.8

Q ss_pred             hccCcccceEEEeCCC-CccCchhcCCCCCCcEEEccCC-CccccchhHHhcCccccEeeccCCC
Q 037304          187 CKMFKFLRVLDLGSLV-LIRYPFEIENLFLLRYLHLNIP-SLKSLPSSLLNSLLNLYTLDKPFSY  249 (257)
Q Consensus       187 ~~~l~~Lr~L~L~~~~-l~~lp~~i~~L~~L~~L~l~~~-~l~~lP~~i~~~L~~L~~L~l~~~~  249 (257)
                      +..+++|+.|+|++|. +..+|.+++++++|++|++++| .++.+|..+  ++.+|++|++++|.
T Consensus       653 ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~i--~l~sL~~L~Lsgc~  715 (1153)
T PLN03210        653 LSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTGI--NLKSLYRLNLSGCS  715 (1153)
T ss_pred             cccCCcccEEEecCCCCccccchhhhccCCCCEEeCCCCCCcCccCCcC--CCCCCCEEeCCCCC
Confidence            3444555555555544 4455555555555555555554 245555543  44555555555543

syringae 6; Provisional

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=98.13  E-value=6.2e-06  Score=78.73  Aligned_cols=59  Identities=19%  Similarity=0.147  Sum_probs=39.1

Q ss_pred             ccceEEEeCCCCccCchhcCCCCCCcEEEccCCCccccchhHHhcCccccEeeccCCCCCcCCC
Q 037304          192 FLRVLDLGSLVLIRYPFEIENLFLLRYLHLNIPSLKSLPSSLLNSLLNLYTLDKPFSYIDHTVD  255 (257)
Q Consensus       192 ~Lr~L~L~~~~l~~lp~~i~~L~~L~~L~l~~~~l~~lP~~i~~~L~~L~~L~l~~~~l~~lP~  255 (257)
                      +|+.|+|++|.+..+|..+.  .+|++|++++|.++.+|..+ .  .+|++|++++|++..+|.
T Consensus       242 ~L~~L~Ls~N~L~~LP~~l~--s~L~~L~Ls~N~L~~LP~~l-~--~sL~~L~Ls~N~Lt~LP~  300 (754)
T PRK15370        242 TIQEMELSINRITELPERLP--SALQSLDLFHNKISCLPENL-P--EELRYLSVYDNSIRTLPA  300 (754)
T ss_pred             cccEEECcCCccCcCChhHh--CCCCEEECcCCccCcccccc-C--CCCcEEECCCCccccCcc
Confidence            46666666666666665554  36777777777777777666 3  467777777777766664

>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]

Probab=97.99  E-value=1.3e-06  Score=82.46  Aligned_cols=89  Identities=24%  Similarity=0.241  Sum_probs=68.2

Q ss_pred             ccccCCCCCccEEEeecCCCCCCCcccchHhhccCcccceEEEeCCCCccCchhcCCCCCCcEEEccCCCccccchhHHh
Q 037304          156 AFLDHFDSFLHSLLHLTSGSHYLNPTYCEKICKMFKFLRVLDLGSLVLIRYPFEIENLFLLRYLHLNIPSLKSLPSSLLN  235 (257)
Q Consensus       156 ~~~~~~~~~Lrsl~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~l~~lp~~i~~L~~L~~L~l~~~~l~~lP~~i~~  235 (257)
                      +...++. +||.|.+..+..+    .++...+.++..|+.|+|+||.++.+|..+.++..|+.|...+|.+..+| .+ .
T Consensus       377 p~l~~~~-hLKVLhLsyNrL~----~fpas~~~kle~LeeL~LSGNkL~~Lp~tva~~~~L~tL~ahsN~l~~fP-e~-~  449 (1081)
T KOG0618|consen  377 PVLVNFK-HLKVLHLSYNRLN----SFPASKLRKLEELEELNLSGNKLTTLPDTVANLGRLHTLRAHSNQLLSFP-EL-A  449 (1081)
T ss_pred             hhhcccc-ceeeeeecccccc----cCCHHHHhchHHhHHHhcccchhhhhhHHHHhhhhhHHHhhcCCceeech-hh-h
Confidence            5666777 8888888877653    46667778888888888888888888888888888888777777777777 55 6


Q ss_pred             cCccccEeeccCCCCC
Q 037304          236 SLLNLYTLDKPFSYID  251 (257)
Q Consensus       236 ~L~~L~~L~l~~~~l~  251 (257)
                      +++.|+++|++.|.++
T Consensus       450 ~l~qL~~lDlS~N~L~  465 (1081)
T KOG0618|consen  450 QLPQLKVLDLSCNNLS  465 (1081)
T ss_pred             hcCcceEEecccchhh
Confidence            7788888888777654

>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]

Probab=97.95  E-value=1.9e-06  Score=81.46  Aligned_cols=86  Identities=28%  Similarity=0.272  Sum_probs=59.7

Q ss_pred             CccEEEeecCCCCCCCcccchHhhccCcccceEEEeCCCCccCchhcCCCCCCcEEEccCCCccccchhHHhcCccccEe
Q 037304          164 FLHSLLHLTSGSHYLNPTYCEKICKMFKFLRVLDLGSLVLIRYPFEIENLFLLRYLHLNIPSLKSLPSSLLNSLLNLYTL  243 (257)
Q Consensus       164 ~Lrsl~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~l~~lp~~i~~L~~L~~L~l~~~~l~~lP~~i~~~L~~L~~L  243 (257)
                      +|++|.+.++...     ..|..+..+..|+.|.++.|-+..+|.+++++.+|+||+|.+|.+..+|.++ ..+++|++|
T Consensus        46 ~L~~l~lsnn~~~-----~fp~~it~l~~L~~ln~s~n~i~~vp~s~~~~~~l~~lnL~~n~l~~lP~~~-~~lknl~~L  119 (1081)
T KOG0618|consen   46 KLKSLDLSNNQIS-----SFPIQITLLSHLRQLNLSRNYIRSVPSSCSNMRNLQYLNLKNNRLQSLPASI-SELKNLQYL  119 (1081)
T ss_pred             eeEEeeccccccc-----cCCchhhhHHHHhhcccchhhHhhCchhhhhhhcchhheeccchhhcCchhH-Hhhhccccc
Confidence            4666666666543     2344556666777777777777777777777777777777777777777777 777777777


Q ss_pred             eccCCCCCcCCC
Q 037304          244 DKPFSYIDHTVD  255 (257)
Q Consensus       244 ~l~~~~l~~lP~  255 (257)
                      |++.|.+...|.
T Consensus       120 dlS~N~f~~~Pl  131 (1081)
T KOG0618|consen  120 DLSFNHFGPIPL  131 (1081)
T ss_pred             ccchhccCCCch
Confidence            777777666664

>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]

Probab=97.93  E-value=1.3e-05  Score=72.75  Aligned_cols=105  Identities=19%  Similarity=0.115  Sum_probs=63.6

Q ss_pred             cEEEEEEeCCCCcc---ccccCCCCCccEEEeecCCCCCCCcccchHhhccCcccceEEEeCCCCccC-chhcCCCCCCc
Q 037304          142 NVKRFTAHGNLNDF---AFLDHFDSFLHSLLHLTSGSHYLNPTYCEKICKMFKFLRVLDLGSLVLIRY-PFEIENLFLLR  217 (257)
Q Consensus       142 ~~r~L~~~~~~~~~---~~~~~~~~~Lrsl~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~l~~l-p~~i~~L~~L~  217 (257)
                      .+.+|.+..+....   .+...++ .+|+|.++.+...    .+....|..-.+++.|+|++|.++.+ -..+..+.+|.
T Consensus       126 hl~~L~L~~N~I~sv~se~L~~l~-alrslDLSrN~is----~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~  200 (873)
T KOG4194|consen  126 HLEKLDLRHNLISSVTSEELSALP-ALRSLDLSRNLIS----EIPKPSFPAKVNIKKLNLASNRITTLETGHFDSLNSLL  200 (873)
T ss_pred             ceeEEeeeccccccccHHHHHhHh-hhhhhhhhhchhh----cccCCCCCCCCCceEEeeccccccccccccccccchhe
Confidence            34555555544332   2334444 5666655555432    23334555555666777777776655 35566677777


Q ss_pred             EEEccCCCccccchhHHhcCccccEeeccCCCCC
Q 037304          218 YLHLNIPSLKSLPSSLLNSLLNLYTLDKPFSYID  251 (257)
Q Consensus       218 ~L~l~~~~l~~lP~~i~~~L~~L~~L~l~~~~l~  251 (257)
                      .|.|+.|+++.||.-+|.+|++|+.|+|..|.+.
T Consensus       201 tlkLsrNrittLp~r~Fk~L~~L~~LdLnrN~ir  234 (873)
T KOG4194|consen  201 TLKLSRNRITTLPQRSFKRLPKLESLDLNRNRIR  234 (873)
T ss_pred             eeecccCcccccCHHHhhhcchhhhhhcccccee
Confidence            7777777777787777566888888888777643

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=97.92  E-value=4.3e-05  Score=73.08  Aligned_cols=100  Identities=14%  Similarity=0.049  Sum_probs=73.4

Q ss_pred             EEEEEEeCCCCc-cccccCCCCCccEEEeecCCCCCCCcccchHhhccCcccceEEEeCCCCccCchhcCCCCCCcEEEc
Q 037304          143 VKRFTAHGNLND-FAFLDHFDSFLHSLLHLTSGSHYLNPTYCEKICKMFKFLRVLDLGSLVLIRYPFEIENLFLLRYLHL  221 (257)
Q Consensus       143 ~r~L~~~~~~~~-~~~~~~~~~~Lrsl~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~l~~lp~~i~~L~~L~~L~l  221 (257)
                      ...+.+...... +|.. -.+ .++.|.+.++...    .++ ..+  .++|+.|++++|.++.+|..+.  .+|+.|++
T Consensus       180 ~~~L~L~~~~LtsLP~~-Ip~-~L~~L~Ls~N~Lt----sLP-~~l--~~nL~~L~Ls~N~LtsLP~~l~--~~L~~L~L  248 (754)
T PRK15370        180 KTELRLKILGLTTIPAC-IPE-QITTLILDNNELK----SLP-ENL--QGNIKTLYANSNQLTSIPATLP--DTIQEMEL  248 (754)
T ss_pred             ceEEEeCCCCcCcCCcc-ccc-CCcEEEecCCCCC----cCC-hhh--ccCCCEEECCCCccccCChhhh--ccccEEEC
Confidence            445555544332 2321 124 7889999888654    222 222  2589999999999999998765  47999999


Q ss_pred             cCCCccccchhHHhcCccccEeeccCCCCCcCCCC
Q 037304          222 NIPSLKSLPSSLLNSLLNLYTLDKPFSYIDHTVDE  256 (257)
Q Consensus       222 ~~~~l~~lP~~i~~~L~~L~~L~l~~~~l~~lP~~  256 (257)
                      ++|.+..+|.++ .  .+|++|++++|++..+|..
T Consensus       249 s~N~L~~LP~~l-~--s~L~~L~Ls~N~L~~LP~~  280 (754)
T PRK15370        249 SINRITELPERL-P--SALQSLDLFHNKISCLPEN  280 (754)
T ss_pred             cCCccCcCChhH-h--CCCCEEECcCCccCccccc
Confidence            999999999988 5  5899999999999888864

>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]

Probab=97.91  E-value=2.3e-06  Score=63.78  Aligned_cols=86  Identities=22%  Similarity=0.253  Sum_probs=67.3

Q ss_pred             CccEEEeecCCCCCCCcccchHhhccCcccceEEEeCCCCccCchhcCCCCCCcEEEccCCCccccchhHHhcCccccEe
Q 037304          164 FLHSLLHLTSGSHYLNPTYCEKICKMFKFLRVLDLGSLVLIRYPFEIENLFLLRYLHLNIPSLKSLPSSLLNSLLNLYTL  243 (257)
Q Consensus       164 ~Lrsl~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~l~~lp~~i~~L~~L~~L~l~~~~l~~lP~~i~~~L~~L~~L  243 (257)
                      .|.+..+.++...    .+++.+-.+++.+..|+|++|.+.++|..+..++.||.|+++.|.+...|.-| ..|.+|-.|
T Consensus        54 el~~i~ls~N~fk----~fp~kft~kf~t~t~lNl~~neisdvPeE~Aam~aLr~lNl~~N~l~~~p~vi-~~L~~l~~L  128 (177)
T KOG4579|consen   54 ELTKISLSDNGFK----KFPKKFTIKFPTATTLNLANNEISDVPEELAAMPALRSLNLRFNPLNAEPRVI-APLIKLDML  128 (177)
T ss_pred             eEEEEecccchhh----hCCHHHhhccchhhhhhcchhhhhhchHHHhhhHHhhhcccccCccccchHHH-HHHHhHHHh
Confidence            4555555555543    34555556677888889999999999988888999999999999988899988 778888888


Q ss_pred             eccCCCCCcCC
Q 037304          244 DKPFSYIDHTV  254 (257)
Q Consensus       244 ~l~~~~l~~lP  254 (257)
                      |..+|...++|
T Consensus       129 ds~~na~~eid  139 (177)
T KOG4579|consen  129 DSPENARAEID  139 (177)
T ss_pred             cCCCCccccCc
Confidence            88888777776

>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]

Probab=97.88  E-value=8.4e-06  Score=73.89  Aligned_cols=87  Identities=18%  Similarity=0.119  Sum_probs=48.5

Q ss_pred             CccEEEeecCCCCCCCcccchHhhccCcccceEEEeCCCCccCc-hhcCCCCCCcEEEccCCCcccc-chhHHhcCcccc
Q 037304          164 FLHSLLHLTSGSHYLNPTYCEKICKMFKFLRVLDLGSLVLIRYP-FEIENLFLLRYLHLNIPSLKSL-PSSLLNSLLNLY  241 (257)
Q Consensus       164 ~Lrsl~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~l~~lp-~~i~~L~~L~~L~l~~~~l~~l-P~~i~~~L~~L~  241 (257)
                      ++..|.+.++...    .+-...|.++.+|.+|.|+.|.++.+| .++.+|++|+.|+|..|.++.. -..+ ..|.+|+
T Consensus       174 ni~~L~La~N~It----~l~~~~F~~lnsL~tlkLsrNrittLp~r~Fk~L~~L~~LdLnrN~irive~ltF-qgL~Sl~  248 (873)
T KOG4194|consen  174 NIKKLNLASNRIT----TLETGHFDSLNSLLTLKLSRNRITTLPQRSFKRLPKLESLDLNRNRIRIVEGLTF-QGLPSLQ  248 (873)
T ss_pred             CceEEeecccccc----ccccccccccchheeeecccCcccccCHHHhhhcchhhhhhccccceeeehhhhh-cCchhhh
Confidence            5556666655543    233345556666666666666666665 3344466666666666665544 2233 5666666


Q ss_pred             EeeccCCCCCcCCC
Q 037304          242 TLDKPFSYIDHTVD  255 (257)
Q Consensus       242 ~L~l~~~~l~~lP~  255 (257)
                      .|.|..|.+..|-+
T Consensus       249 nlklqrN~I~kL~D  262 (873)
T KOG4194|consen  249 NLKLQRNDISKLDD  262 (873)
T ss_pred             hhhhhhcCcccccC
Confidence            66666665555544

>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]

Probab=97.86  E-value=3.6e-06  Score=70.57  Aligned_cols=84  Identities=20%  Similarity=0.162  Sum_probs=51.1

Q ss_pred             CccEEEeecCCCCCCCcccchHhhccCcccceEEEeCCCCccCchh----------------------cCCCCCCcEEEc
Q 037304          164 FLHSLLHLTSGSHYLNPTYCEKICKMFKFLRVLDLGSLVLIRYPFE----------------------IENLFLLRYLHL  221 (257)
Q Consensus       164 ~Lrsl~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~l~~lp~~----------------------i~~L~~L~~L~l  221 (257)
                      ++|.|.++.+...     .. ..+..+.+|..|||++|.+.++-..                      +++|-+|.+|++
T Consensus       308 kir~L~lS~N~i~-----~v-~nLa~L~~L~~LDLS~N~Ls~~~Gwh~KLGNIKtL~La~N~iE~LSGL~KLYSLvnLDl  381 (490)
T KOG1259|consen  308 KLRRLILSQNRIR-----TV-QNLAELPQLQLLDLSGNLLAECVGWHLKLGNIKTLKLAQNKIETLSGLRKLYSLVNLDL  381 (490)
T ss_pred             ceeEEecccccee-----ee-hhhhhcccceEeecccchhHhhhhhHhhhcCEeeeehhhhhHhhhhhhHhhhhheeccc
Confidence            7888888777653     12 3366777777777777765433222                      344455666666


Q ss_pred             cCCCccccc--hhHHhcCccccEeeccCCCCCcCC
Q 037304          222 NIPSLKSLP--SSLLNSLLNLYTLDKPFSYIDHTV  254 (257)
Q Consensus       222 ~~~~l~~lP--~~i~~~L~~L~~L~l~~~~l~~lP  254 (257)
                      ++|+++.+-  .+| |+|+.|+++.|.+|.+..+|
T Consensus       382 ~~N~Ie~ldeV~~I-G~LPCLE~l~L~~NPl~~~v  415 (490)
T KOG1259|consen  382 SSNQIEELDEVNHI-GNLPCLETLRLTGNPLAGSV  415 (490)
T ss_pred             cccchhhHHHhccc-ccccHHHHHhhcCCCccccc
Confidence            666666443  356 66666666666666655554

>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]

Probab=97.76  E-value=1.4e-05  Score=77.54  Aligned_cols=102  Identities=25%  Similarity=0.320  Sum_probs=82.8

Q ss_pred             CcEEEEEEeCCCC---ccc--cccCCCCCccEEEeecCCCCCCCcccchHhhccCcccceEEEeCCCCccCchhcCCCCC
Q 037304          141 ENVKRFTAHGNLN---DFA--FLDHFDSFLHSLLHLTSGSHYLNPTYCEKICKMFKFLRVLDLGSLVLIRYPFEIENLFL  215 (257)
Q Consensus       141 ~~~r~L~~~~~~~---~~~--~~~~~~~~Lrsl~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~l~~lp~~i~~L~~  215 (257)
                      .+++-|.+..+..   ..+  ....++ .||.|.+.++...    ..+|..++.+-+||.|+++++.+..+|.++++|+.
T Consensus       545 ~~L~tLll~~n~~~l~~is~~ff~~m~-~LrVLDLs~~~~l----~~LP~~I~~Li~LryL~L~~t~I~~LP~~l~~Lk~  619 (889)
T KOG4658|consen  545 PKLRTLLLQRNSDWLLEISGEFFRSLP-LLRVLDLSGNSSL----SKLPSSIGELVHLRYLDLSDTGISHLPSGLGNLKK  619 (889)
T ss_pred             CccceEEEeecchhhhhcCHHHHhhCc-ceEEEECCCCCcc----CcCChHHhhhhhhhcccccCCCccccchHHHHHHh
Confidence            4577777777642   222  266788 9999999986542    45788999999999999999999999999999999


Q ss_pred             CcEEEccCCC-ccccchhHHhcCccccEeeccCC
Q 037304          216 LRYLHLNIPS-LKSLPSSLLNSLLNLYTLDKPFS  248 (257)
Q Consensus       216 L~~L~l~~~~-l~~lP~~i~~~L~~L~~L~l~~~  248 (257)
                      |.||++..+. +..+|.-+ +.|++|++|.+...
T Consensus       620 L~~Lnl~~~~~l~~~~~i~-~~L~~Lr~L~l~~s  652 (889)
T KOG4658|consen  620 LIYLNLEVTGRLESIPGIL-LELQSLRVLRLPRS  652 (889)
T ss_pred             hheeccccccccccccchh-hhcccccEEEeecc
Confidence            9999999986 55555555 77999999998764

>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]

Probab=97.73  E-value=1e-05  Score=67.92  Aligned_cols=83  Identities=23%  Similarity=0.104  Sum_probs=62.9

Q ss_pred             CccEEEeecCCCCCCCcccchHhhccCcccceEEEeCCCCccCchhcCCCCCCcEEEccCCCccccc-------------
Q 037304          164 FLHSLLHLTSGSHYLNPTYCEKICKMFKFLRVLDLGSLVLIRYPFEIENLFLLRYLHLNIPSLKSLP-------------  230 (257)
Q Consensus       164 ~Lrsl~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~l~~lp~~i~~L~~L~~L~l~~~~l~~lP-------------  230 (257)
                      .|.++.++++...     ...++..-.+.+|+|+++.|.+..+-. +..|.+|..|+|++|.+.++-             
T Consensus       285 ~LtelDLS~N~I~-----~iDESvKL~Pkir~L~lS~N~i~~v~n-La~L~~L~~LDLS~N~Ls~~~Gwh~KLGNIKtL~  358 (490)
T KOG1259|consen  285 ELTELDLSGNLIT-----QIDESVKLAPKLRRLILSQNRIRTVQN-LAELPQLQLLDLSGNLLAECVGWHLKLGNIKTLK  358 (490)
T ss_pred             hhhhccccccchh-----hhhhhhhhccceeEEeccccceeeehh-hhhcccceEeecccchhHhhhhhHhhhcCEeeee
Confidence            5667777776553     456777788999999999999876543 888899999999987664332             


Q ss_pred             ---------hhHHhcCccccEeeccCCCCCcC
Q 037304          231 ---------SSLLNSLLNLYTLDKPFSYIDHT  253 (257)
Q Consensus       231 ---------~~i~~~L~~L~~L~l~~~~l~~l  253 (257)
                               +++ ++|++|..||+++|+++++
T Consensus       359 La~N~iE~LSGL-~KLYSLvnLDl~~N~Ie~l  389 (490)
T KOG1259|consen  359 LAQNKIETLSGL-RKLYSLVNLDLSSNQIEEL  389 (490)
T ss_pred             hhhhhHhhhhhh-HhhhhheeccccccchhhH
Confidence                     345 7888888999988876654

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=97.67  E-value=7.3e-05  Score=64.17  Aligned_cols=87  Identities=23%  Similarity=0.101  Sum_probs=40.3

Q ss_pred             CccEEEeecCCCCCCCcccchHhhccCcccceEEEeCCCCc-----cCchhcCCCCCCcEEEccCCCccc-cchhHHh--
Q 037304          164 FLHSLLHLTSGSHYLNPTYCEKICKMFKFLRVLDLGSLVLI-----RYPFEIENLFLLRYLHLNIPSLKS-LPSSLLN--  235 (257)
Q Consensus       164 ~Lrsl~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~l~-----~lp~~i~~L~~L~~L~l~~~~l~~-lP~~i~~--  235 (257)
                      ++++|.+.++..........+..+..+++|+.|++++|.+.     .++..+..+++|++|++++|.+.. -+..+..  
T Consensus       166 ~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~l~~~~~~~l~~~~  245 (319)
T cd00116         166 DLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLTDAGAAALASAL  245 (319)
T ss_pred             CcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCCcCchHHHHHHHHHH
Confidence            55555555544321000112223344456666666666543     233444555666666666665542 1111101  


Q ss_pred             --cCccccEeeccCCCC
Q 037304          236 --SLLNLYTLDKPFSYI  250 (257)
Q Consensus       236 --~L~~L~~L~l~~~~l  250 (257)
                        ....|+.|++++|.+
T Consensus       246 ~~~~~~L~~L~l~~n~i  262 (319)
T cd00116         246 LSPNISLLTLSLSCNDI  262 (319)
T ss_pred             hccCCCceEEEccCCCC
Confidence              125666666666654

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=97.66  E-value=5.9e-05  Score=64.75  Aligned_cols=107  Identities=18%  Similarity=0.062  Sum_probs=73.6

Q ss_pred             EEEEEEeCCCCcc-------ccccCC-CCCccEEEeecCCCCCCCcccchHhhccCcccceEEEeCCCCc-----cCchh
Q 037304          143 VKRFTAHGNLNDF-------AFLDHF-DSFLHSLLHLTSGSHYLNPTYCEKICKMFKFLRVLDLGSLVLI-----RYPFE  209 (257)
Q Consensus       143 ~r~L~~~~~~~~~-------~~~~~~-~~~Lrsl~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~l~-----~lp~~  209 (257)
                      +++|.+..+....       ...... + +++.|.+.++.............+..++.|+.|++++|.+.     .++..
T Consensus       110 L~~L~ls~~~~~~~~~~~l~~~l~~~~~-~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~  188 (319)
T cd00116         110 LQELKLNNNGLGDRGLRLLAKGLKDLPP-ALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNGIGDAGIRALAEG  188 (319)
T ss_pred             ccEEEeeCCccchHHHHHHHHHHHhCCC-CceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcCCCCchHHHHHHHHH
Confidence            7788887765441       122344 5 78888888776531111223456677788999999988876     34455


Q ss_pred             cCCCCCCcEEEccCCCcc-----ccchhHHhcCccccEeeccCCCCC
Q 037304          210 IENLFLLRYLHLNIPSLK-----SLPSSLLNSLLNLYTLDKPFSYID  251 (257)
Q Consensus       210 i~~L~~L~~L~l~~~~l~-----~lP~~i~~~L~~L~~L~l~~~~l~  251 (257)
                      +..+++|++|++++|.+.     .++..+ ..+++|++|++++|.+.
T Consensus       189 l~~~~~L~~L~L~~n~i~~~~~~~l~~~~-~~~~~L~~L~ls~n~l~  234 (319)
T cd00116         189 LKANCNLEVLDLNNNGLTDEGASALAETL-ASLKSLEVLNLGDNNLT  234 (319)
T ss_pred             HHhCCCCCEEeccCCccChHHHHHHHHHh-cccCCCCEEecCCCcCc
Confidence            666678999999988764     455566 77888999999998765

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=97.60  E-value=8.2e-05  Score=71.17  Aligned_cols=57  Identities=23%  Similarity=0.103  Sum_probs=46.9

Q ss_pred             cccceEEEeCCCCccCchhcCCCCCCcEEEccCCCccccchhHHhcCccccEeeccCCCCC
Q 037304          191 KFLRVLDLGSLVLIRYPFEIENLFLLRYLHLNIPSLKSLPSSLLNSLLNLYTLDKPFSYID  251 (257)
Q Consensus       191 ~~Lr~L~L~~~~l~~lp~~i~~L~~L~~L~l~~~~l~~lP~~i~~~L~~L~~L~l~~~~l~  251 (257)
                      ++|+.|++++|.+..+|...   .+|++|++++|.++.+|.++ +++.+|++|++++|.+.
T Consensus       402 s~L~~LdLS~N~LssIP~l~---~~L~~L~Ls~NqLt~LP~sl-~~L~~L~~LdLs~N~Ls  458 (788)
T PRK15387        402 SELKELMVSGNRLTSLPMLP---SGLLSLSVYRNQLTRLPESL-IHLSSETTVNLEGNPLS  458 (788)
T ss_pred             cCCCEEEccCCcCCCCCcch---hhhhhhhhccCcccccChHH-hhccCCCeEECCCCCCC
Confidence            46777788888877777532   46788999999999999999 99999999999999875

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=97.60  E-value=0.00015  Score=69.34  Aligned_cols=109  Identities=17%  Similarity=-0.038  Sum_probs=54.9

Q ss_pred             CcEEEEEEeCCCCcc-ccccCCCCCccEEEeecCCCCCCCcc------------cchHhhccCcccceEEEeCCCCccCc
Q 037304          141 ENVKRFTAHGNLNDF-AFLDHFDSFLHSLLHLTSGSHYLNPT------------YCEKICKMFKFLRVLDLGSLVLIRYP  207 (257)
Q Consensus       141 ~~~r~L~~~~~~~~~-~~~~~~~~~Lrsl~l~~~~~~~~~~~------------~~~~~~~~l~~Lr~L~L~~~~l~~lp  207 (257)
                      ..++.|.+..+.... +.  ..+ +|++|.+.++.....+..            .+...-.....|+.|++++|.++.+|
T Consensus       222 ~~L~~L~L~~N~Lt~LP~--lp~-~Lk~LdLs~N~LtsLP~lp~sL~~L~Ls~N~L~~Lp~lp~~L~~L~Ls~N~Lt~LP  298 (788)
T PRK15387        222 AHITTLVIPDNNLTSLPA--LPP-ELRTLEVSGNQLTSLPVLPPGLLELSIFSNPLTHLPALPSGLCKLWIFGNQLTSLP  298 (788)
T ss_pred             cCCCEEEccCCcCCCCCC--CCC-CCcEEEecCCccCcccCcccccceeeccCCchhhhhhchhhcCEEECcCCcccccc
Confidence            345677776665443 22  234 777887777654321000            00000001123445555555555554


Q ss_pred             hhcCCCCCCcEEEccCCCccccchhH--HhcC--------------ccccEeeccCCCCCcCCC
Q 037304          208 FEIENLFLLRYLHLNIPSLKSLPSSL--LNSL--------------LNLYTLDKPFSYIDHTVD  255 (257)
Q Consensus       208 ~~i~~L~~L~~L~l~~~~l~~lP~~i--~~~L--------------~~L~~L~l~~~~l~~lP~  255 (257)
                      ..   +++|++|++++|.++.+|...  +..|              .+|++|++++|++..+|.
T Consensus       299 ~~---p~~L~~LdLS~N~L~~Lp~lp~~L~~L~Ls~N~L~~LP~lp~~Lq~LdLS~N~Ls~LP~  359 (788)
T PRK15387        299 VL---PPGLQELSVSDNQLASLPALPSELCKLWAYNNQLTSLPTLPSGLQELSVSDNQLASLPT  359 (788)
T ss_pred             cc---ccccceeECCCCccccCCCCcccccccccccCccccccccccccceEecCCCccCCCCC
Confidence            32   245677777766666554411  0111              367778888877777664

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]

Probab=97.59  E-value=3.2e-05  Score=68.77  Aligned_cols=86  Identities=28%  Similarity=0.253  Sum_probs=54.3

Q ss_pred             CccEEEeecCCCCCCCcccchHhhccCc-ccceEEEeCCCCccCchhcCCCCCCcEEEccCCCccccchhHHhcCccccE
Q 037304          164 FLHSLLHLTSGSHYLNPTYCEKICKMFK-FLRVLDLGSLVLIRYPFEIENLFLLRYLHLNIPSLKSLPSSLLNSLLNLYT  242 (257)
Q Consensus       164 ~Lrsl~l~~~~~~~~~~~~~~~~~~~l~-~Lr~L~L~~~~l~~lp~~i~~L~~L~~L~l~~~~l~~lP~~i~~~L~~L~~  242 (257)
                      .+..+.+.++...     -.+.....++ +|+.|+++++.+..+|..++.+++|+.|+++.|.+..+|... +.+.+|+.
T Consensus       117 ~l~~L~l~~n~i~-----~i~~~~~~~~~nL~~L~l~~N~i~~l~~~~~~l~~L~~L~l~~N~l~~l~~~~-~~~~~L~~  190 (394)
T COG4886         117 NLTSLDLDNNNIT-----DIPPLIGLLKSNLKELDLSDNKIESLPSPLRNLPNLKNLDLSFNDLSDLPKLL-SNLSNLNN  190 (394)
T ss_pred             ceeEEecCCcccc-----cCccccccchhhcccccccccchhhhhhhhhccccccccccCCchhhhhhhhh-hhhhhhhh
Confidence            4555555555442     1233334442 677777777777766666677777777777777777777766 66777777


Q ss_pred             eeccCCCCCcCCC
Q 037304          243 LDKPFSYIDHTVD  255 (257)
Q Consensus       243 L~l~~~~l~~lP~  255 (257)
                      |++++|++..+|.
T Consensus       191 L~ls~N~i~~l~~  203 (394)
T COG4886         191 LDLSGNKISDLPP  203 (394)
T ss_pred             eeccCCccccCch
Confidence            7777776666664

>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]

Probab=97.58  E-value=1.3e-05  Score=69.44  Aligned_cols=84  Identities=20%  Similarity=0.084  Sum_probs=68.0

Q ss_pred             CccEEEeecCCCCCCCcccchHhhccCcccceEEEeCCCCccC-chhcCCCCCCcEEEccC-CCccccchhHHhcCcccc
Q 037304          164 FLHSLLHLTSGSHYLNPTYCEKICKMFKFLRVLDLGSLVLIRY-PFEIENLFLLRYLHLNI-PSLKSLPSSLLNSLLNLY  241 (257)
Q Consensus       164 ~Lrsl~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~l~~l-p~~i~~L~~L~~L~l~~-~~l~~lP~~i~~~L~~L~  241 (257)
                      ....+.+..+..    ..+++..|+.+++||.|||+.|.|+.+ |+.+..|..|-.|-+-+ |+|+.+|...|+.|..||
T Consensus        68 ~tveirLdqN~I----~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~slq  143 (498)
T KOG4237|consen   68 ETVEIRLDQNQI----SSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGLSSLQ  143 (498)
T ss_pred             cceEEEeccCCc----ccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHHHH
Confidence            444555666654    367889999999999999999999966 89999999887777766 779999999889999999


Q ss_pred             EeeccCCCCC
Q 037304          242 TLDKPFSYID  251 (257)
Q Consensus       242 ~L~l~~~~l~  251 (257)
                      -|.+.-|++.
T Consensus       144 rLllNan~i~  153 (498)
T KOG4237|consen  144 RLLLNANHIN  153 (498)
T ss_pred             HHhcChhhhc
Confidence            8888776543

>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]

Probab=97.52  E-value=2.6e-05  Score=70.46  Aligned_cols=71  Identities=18%  Similarity=0.158  Sum_probs=56.2

Q ss_pred             chHhhccCcccceEEEeCCCCccCchhcCCCCCCcEEEccCCCccccchhHHhcCccccEeeccCCCCCcCCC
Q 037304          183 CEKICKMFKFLRVLDLGSLVLIRYPFEIENLFLLRYLHLNIPSLKSLPSSLLNSLLNLYTLDKPFSYIDHTVD  255 (257)
Q Consensus       183 ~~~~~~~l~~Lr~L~L~~~~l~~lp~~i~~L~~L~~L~l~~~~l~~lP~~i~~~L~~L~~L~l~~~~l~~lP~  255 (257)
                      ++.-+..+.+||.|.+..|.+..+|..++.| .|..||++.|++..||-++ .++.+||+|-|.+|.++.=|.
T Consensus       181 lpsql~~l~slr~l~vrRn~l~~lp~El~~L-pLi~lDfScNkis~iPv~f-r~m~~Lq~l~LenNPLqSPPA  251 (722)
T KOG0532|consen  181 LPSQLGYLTSLRDLNVRRNHLEDLPEELCSL-PLIRLDFSCNKISYLPVDF-RKMRHLQVLQLENNPLQSPPA  251 (722)
T ss_pred             chHHhhhHHHHHHHHHhhhhhhhCCHHHhCC-ceeeeecccCceeecchhh-hhhhhheeeeeccCCCCCChH
Confidence            4455667777788888888877888877755 4778888888888999998 999999999888887877664

>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]

Probab=97.50  E-value=1.5e-05  Score=71.95  Aligned_cols=86  Identities=22%  Similarity=0.181  Sum_probs=71.6

Q ss_pred             CccEEEeecCCCCCCCcccchHhhccCcccceEEEeCCCCccCchhcCCCCCCcEEEccCCCccccchhHHhcCccccEe
Q 037304          164 FLHSLLHLTSGSHYLNPTYCEKICKMFKFLRVLDLGSLVLIRYPFEIENLFLLRYLHLNIPSLKSLPSSLLNSLLNLYTL  243 (257)
Q Consensus       164 ~Lrsl~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~l~~lp~~i~~L~~L~~L~l~~~~l~~lP~~i~~~L~~L~~L  243 (257)
                      -|+.|++.++...     ..|.-++....|..||.+.|.+..+|..+++|..|+.|+++.|.+..+|+.+ + --.|..|
T Consensus       144 pLkvli~sNNkl~-----~lp~~ig~~~tl~~ld~s~nei~slpsql~~l~slr~l~vrRn~l~~lp~El-~-~LpLi~l  216 (722)
T KOG0532|consen  144 PLKVLIVSNNKLT-----SLPEEIGLLPTLAHLDVSKNEIQSLPSQLGYLTSLRDLNVRRNHLEDLPEEL-C-SLPLIRL  216 (722)
T ss_pred             cceeEEEecCccc-----cCCcccccchhHHHhhhhhhhhhhchHHhhhHHHHHHHHHhhhhhhhCCHHH-h-CCceeee
Confidence            4888888887664     3556666788889999999999999999999999999999999999999998 7 4568889


Q ss_pred             eccCCCCCcCCCC
Q 037304          244 DKPFSYIDHTVDE  256 (257)
Q Consensus       244 ~l~~~~l~~lP~~  256 (257)
                      |++.|++..+|-.
T Consensus       217 DfScNkis~iPv~  229 (722)
T KOG0532|consen  217 DFSCNKISYLPVD  229 (722)
T ss_pred             ecccCceeecchh
Confidence            9999998888854

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]

Probab=97.45  E-value=0.00011  Score=69.77  Aligned_cols=84  Identities=23%  Similarity=0.198  Sum_probs=49.4

Q ss_pred             CCCCCccEEEeecCCCCCCCcccchHhhccCcccceEEEeCCCCccCchhcCCCCCCcEEEccCCCccccc--hhHHhcC
Q 037304          160 HFDSFLHSLLHLTSGSHYLNPTYCEKICKMFKFLRVLDLGSLVLIRYPFEIENLFLLRYLHLNIPSLKSLP--SSLLNSL  237 (257)
Q Consensus       160 ~~~~~Lrsl~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~l~~lp~~i~~L~~L~~L~l~~~~l~~lP--~~i~~~L  237 (257)
                      -+| .||+|.+.+....   .......+.++++|+.||+++++++.+ ..|++|++|+.|.+++-.++.-+  ..+ .+|
T Consensus       146 ~LP-sL~sL~i~~~~~~---~~dF~~lc~sFpNL~sLDIS~TnI~nl-~GIS~LknLq~L~mrnLe~e~~~~l~~L-F~L  219 (699)
T KOG3665|consen  146 MLP-SLRSLVISGRQFD---NDDFSQLCASFPNLRSLDISGTNISNL-SGISRLKNLQVLSMRNLEFESYQDLIDL-FNL  219 (699)
T ss_pred             hCc-ccceEEecCceec---chhHHHHhhccCccceeecCCCCccCc-HHHhccccHHHHhccCCCCCchhhHHHH-hcc
Confidence            345 7777777665442   122345566777777777777776655 55666666666666654444221  234 566


Q ss_pred             ccccEeeccCCC
Q 037304          238 LNLYTLDKPFSY  249 (257)
Q Consensus       238 ~~L~~L~l~~~~  249 (257)
                      ++|++||+|...
T Consensus       220 ~~L~vLDIS~~~  231 (699)
T KOG3665|consen  220 KKLRVLDISRDK  231 (699)
T ss_pred             cCCCeeeccccc
Confidence            666666666543

>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]

Probab=97.32  E-value=7.1e-05  Score=64.97  Aligned_cols=71  Identities=25%  Similarity=0.164  Sum_probs=58.6

Q ss_pred             chHhhccCcccceEEEeCCCCccC-chhcCCCCCCcEEEccCCCccccchhHHhcCccccEeeccCCCCCcC
Q 037304          183 CEKICKMFKFLRVLDLGSLVLIRY-PFEIENLFLLRYLHLNIPSLKSLPSSLLNSLLNLYTLDKPFSYIDHT  253 (257)
Q Consensus       183 ~~~~~~~l~~Lr~L~L~~~~l~~l-p~~i~~L~~L~~L~l~~~~l~~lP~~i~~~L~~L~~L~l~~~~l~~l  253 (257)
                      +...|.++++||+|+|++|.++.+ +.++..+.+++.|.|..|+++.+-..+|..|..|++|+|.+|+++.+
T Consensus       266 P~~cf~~L~~L~~lnlsnN~i~~i~~~aFe~~a~l~eL~L~~N~l~~v~~~~f~~ls~L~tL~L~~N~it~~  337 (498)
T KOG4237|consen  266 PAKCFKKLPNLRKLNLSNNKITRIEDGAFEGAAELQELYLTRNKLEFVSSGMFQGLSGLKTLSLYDNQITTV  337 (498)
T ss_pred             hHHHHhhcccceEeccCCCccchhhhhhhcchhhhhhhhcCcchHHHHHHHhhhccccceeeeecCCeeEEE
Confidence            345688899999999999988866 67788888888888888888888888878888888888888887643

>PRK15386 type III secretion protein GogB; Provisional

Probab=97.20  E-value=0.0011  Score=58.84  Aligned_cols=98  Identities=17%  Similarity=0.043  Sum_probs=53.7

Q ss_pred             cEEEEEEeCCCCccccccCCCCCccEEEeecCCCCCCCcccchHhhccCcccceEEEeCC-CCccCchhcCCCCCCcEEE
Q 037304          142 NVKRFTAHGNLNDFAFLDHFDSFLHSLLHLTSGSHYLNPTYCEKICKMFKFLRVLDLGSL-VLIRYPFEIENLFLLRYLH  220 (257)
Q Consensus       142 ~~r~L~~~~~~~~~~~~~~~~~~Lrsl~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~-~l~~lp~~i~~L~~L~~L~  220 (257)
                      ..++|.+..+....  ...++.+|++|.+.++...    ...|..+  .++|+.|++++| .+..+|.+      |+.|.
T Consensus        53 ~l~~L~Is~c~L~s--LP~LP~sLtsL~Lsnc~nL----tsLP~~L--P~nLe~L~Ls~Cs~L~sLP~s------Le~L~  118 (426)
T PRK15386         53 ASGRLYIKDCDIES--LPVLPNELTEITIENCNNL----TTLPGSI--PEGLEKLTVCHCPEISGLPES------VRSLE  118 (426)
T ss_pred             CCCEEEeCCCCCcc--cCCCCCCCcEEEccCCCCc----ccCCchh--hhhhhheEccCcccccccccc------cceEE
Confidence            34566666553322  1234436778877664431    1222222  246777888777 46666654      44444


Q ss_pred             ccCCC---ccccchhHHhcCc------------------cccEeeccCCCCCcCC
Q 037304          221 LNIPS---LKSLPSSLLNSLL------------------NLYTLDKPFSYIDHTV  254 (257)
Q Consensus       221 l~~~~---l~~lP~~i~~~L~------------------~L~~L~l~~~~l~~lP  254 (257)
                      ++++.   +..+|+++ ..|.                  +|++|++++|....+|
T Consensus       119 L~~n~~~~L~~LPssL-k~L~I~~~n~~~~~~lp~~LPsSLk~L~Is~c~~i~LP  172 (426)
T PRK15386        119 IKGSATDSIKNVPNGL-TSLSINSYNPENQARIDNLISPSLKTLSLTGCSNIILP  172 (426)
T ss_pred             eCCCCCcccccCcchH-hheeccccccccccccccccCCcccEEEecCCCcccCc
Confidence            54432   56677776 6552                  6777888777643333

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]

Probab=97.04  E-value=0.00034  Score=62.22  Aligned_cols=71  Identities=30%  Similarity=0.259  Sum_probs=64.0

Q ss_pred             HhhccCcccceEEEeCCCCccCchhcCCCC-CCcEEEccCCCccccchhHHhcCccccEeeccCCCCCcCCCC
Q 037304          185 KICKMFKFLRVLDLGSLVLIRYPFEIENLF-LLRYLHLNIPSLKSLPSSLLNSLLNLYTLDKPFSYIDHTVDE  256 (257)
Q Consensus       185 ~~~~~l~~Lr~L~L~~~~l~~lp~~i~~L~-~L~~L~l~~~~l~~lP~~i~~~L~~L~~L~l~~~~l~~lP~~  256 (257)
                      .....++.+..|++.++.+.++|..++.+. +|+.|+++++.+..+|..+ +.+++|+.|++++|.+.++|..
T Consensus       110 ~~~~~~~~l~~L~l~~n~i~~i~~~~~~~~~nL~~L~l~~N~i~~l~~~~-~~l~~L~~L~l~~N~l~~l~~~  181 (394)
T COG4886         110 SELLELTNLTSLDLDNNNITDIPPLIGLLKSNLKELDLSDNKIESLPSPL-RNLPNLKNLDLSFNDLSDLPKL  181 (394)
T ss_pred             hhhhcccceeEEecCCcccccCccccccchhhcccccccccchhhhhhhh-hccccccccccCCchhhhhhhh
Confidence            344555789999999999999999999995 9999999999999999999 9999999999999999988863

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]

Probab=97.01  E-value=0.00032  Score=66.61  Aligned_cols=82  Identities=22%  Similarity=0.141  Sum_probs=65.1

Q ss_pred             CccEEEeecCCCCCCCcccchHhhccCcccceEEEeCCCCc--cCchhcCCCCCCcEEEccCCCccccchhHHhcCcccc
Q 037304          164 FLHSLLHLTSGSHYLNPTYCEKICKMFKFLRVLDLGSLVLI--RYPFEIENLFLLRYLHLNIPSLKSLPSSLLNSLLNLY  241 (257)
Q Consensus       164 ~Lrsl~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~l~--~lp~~i~~L~~L~~L~l~~~~l~~lP~~i~~~L~~L~  241 (257)
                      +||.|.+.|...-  ....+...-..+|+|+.|.+.|-.+.  ++-.-..++++|+.||+|+|+++.+ .+| ++|+|||
T Consensus       123 nL~~LdI~G~~~~--s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl-~GI-S~LknLq  198 (699)
T KOG3665|consen  123 NLQHLDISGSELF--SNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL-SGI-SRLKNLQ  198 (699)
T ss_pred             hhhhcCccccchh--hccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc-HHH-hccccHH
Confidence            7888888775442  44556667778999999999997754  4455566789999999999999998 888 9999999


Q ss_pred             EeeccCCC
Q 037304          242 TLDKPFSY  249 (257)
Q Consensus       242 ~L~l~~~~  249 (257)
                      +|.+++=.
T Consensus       199 ~L~mrnLe  206 (699)
T KOG3665|consen  199 VLSMRNLE  206 (699)
T ss_pred             HHhccCCC
Confidence            99887643

>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]

Probab=96.96  E-value=0.00023  Score=53.28  Aligned_cols=70  Identities=14%  Similarity=0.138  Sum_probs=60.5

Q ss_pred             HhhccCcccceEEEeCCCCccCchhcCCC-CCCcEEEccCCCccccchhHHhcCccccEeeccCCCCCcCCC
Q 037304          185 KICKMFKFLRVLDLGSLVLIRYPFEIENL-FLLRYLHLNIPSLKSLPSSLLNSLLNLYTLDKPFSYIDHTVD  255 (257)
Q Consensus       185 ~~~~~l~~Lr~L~L~~~~l~~lp~~i~~L-~~L~~L~l~~~~l~~lP~~i~~~L~~L~~L~l~~~~l~~lP~  255 (257)
                      ..+.+...|...+|++|.++.+|+.+... +-+..|++++|.++.+|..+ ..++.|+.|+++.|.+..+|.
T Consensus        47 y~l~~~~el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~neisdvPeE~-Aam~aLr~lNl~~N~l~~~p~  117 (177)
T KOG4579|consen   47 YMLSKGYELTKISLSDNGFKKFPKKFTIKFPTATTLNLANNEISDVPEEL-AAMPALRSLNLRFNPLNAEPR  117 (177)
T ss_pred             HHHhCCceEEEEecccchhhhCCHHHhhccchhhhhhcchhhhhhchHHH-hhhHHhhhcccccCccccchH
Confidence            34456667888999999999999888765 47899999999999999998 999999999999999877764

>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=96.92  E-value=0.0003  Score=35.31  Aligned_cols=18  Identities=50%  Similarity=0.742  Sum_probs=9.9

Q ss_pred             CcEEEccCCCccccchhH
Q 037304          216 LRYLHLNIPSLKSLPSSL  233 (257)
Q Consensus       216 L~~L~l~~~~l~~lP~~i  233 (257)
                      |++|++++|.++.+|+++
T Consensus         2 L~~Ldls~n~l~~ip~~~   19 (22)
T PF00560_consen    2 LEYLDLSGNNLTSIPSSF   19 (22)
T ss_dssp             ESEEEETSSEESEEGTTT
T ss_pred             ccEEECCCCcCEeCChhh
Confidence            455555555555555554

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....

>PRK15386 type III secretion protein GogB; Provisional

Probab=96.84  E-value=0.0016  Score=57.71  Aligned_cols=81  Identities=17%  Similarity=0.089  Sum_probs=48.1

Q ss_pred             ccCCCCCccEEEeecCCCCCCCcccchHhhccCcccceEEEeCCC-CccCchhcCCCCCCcEEEccCC-CccccchhHHh
Q 037304          158 LDHFDSFLHSLLHLTSGSHYLNPTYCEKICKMFKFLRVLDLGSLV-LIRYPFEIENLFLLRYLHLNIP-SLKSLPSSLLN  235 (257)
Q Consensus       158 ~~~~~~~Lrsl~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~-l~~lp~~i~~L~~L~~L~l~~~-~l~~lP~~i~~  235 (257)
                      ...+. +++.|.+.++...    . +|   .-..+|+.|.+++|. ++.+|..+.  .+|++|.+++| .+..+|+++ .
T Consensus        48 ~~~~~-~l~~L~Is~c~L~----s-LP---~LP~sLtsL~Lsnc~nLtsLP~~LP--~nLe~L~Ls~Cs~L~sLP~sL-e  115 (426)
T PRK15386         48 IEEAR-ASGRLYIKDCDIE----S-LP---VLPNELTEITIENCNNLTTLPGSIP--EGLEKLTVCHCPEISGLPESV-R  115 (426)
T ss_pred             HHHhc-CCCEEEeCCCCCc----c-cC---CCCCCCcEEEccCCCCcccCCchhh--hhhhheEccCccccccccccc-c
Confidence            33456 7777777766432    1 12   112357788887765 667776553  47888888877 577777654 3


Q ss_pred             cCccccEeeccCCC---CCcCCCC
Q 037304          236 SLLNLYTLDKPFSY---IDHTVDE  256 (257)
Q Consensus       236 ~L~~L~~L~l~~~~---l~~lP~~  256 (257)
                      .      |++.++.   +.+||++
T Consensus       116 ~------L~L~~n~~~~L~~LPss  133 (426)
T PRK15386        116 S------LEIKGSATDSIKNVPNG  133 (426)
T ss_pred             e------EEeCCCCCcccccCcch
Confidence            3      3344332   5667654

>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=96.64  E-value=0.00081  Score=33.72  Aligned_cols=22  Identities=36%  Similarity=0.380  Sum_probs=18.7

Q ss_pred             ccceEEEeCCCCccCchhcCCC
Q 037304          192 FLRVLDLGSLVLIRYPFEIENL  213 (257)
Q Consensus       192 ~Lr~L~L~~~~l~~lp~~i~~L  213 (257)
                      +|++|++++|.++.+|.++++|
T Consensus         1 ~L~~Ldls~n~l~~ip~~~~~l   22 (22)
T PF00560_consen    1 NLEYLDLSGNNLTSIPSSFSNL   22 (22)
T ss_dssp             TESEEEETSSEESEEGTTTTT-
T ss_pred             CccEEECCCCcCEeCChhhcCC
Confidence            5899999999999999887764

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....

>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]

Probab=96.64  E-value=0.00083  Score=59.17  Aligned_cols=108  Identities=19%  Similarity=0.189  Sum_probs=71.6

Q ss_pred             CcEEEEEEeCCCCcc----ccccCCCCCccEEEeecCCCCCCCcccchHhhccCcccceEEEeCCCCccCc--hhcCCCC
Q 037304          141 ENVKRFTAHGNLNDF----AFLDHFDSFLHSLLHLTSGSHYLNPTYCEKICKMFKFLRVLDLGSLVLIRYP--FEIENLF  214 (257)
Q Consensus       141 ~~~r~L~~~~~~~~~----~~~~~~~~~Lrsl~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~l~~lp--~~i~~L~  214 (257)
                      ..+..|.+..+....    .-...++ .+..|.+..+...    ........-++.|+.|||++|.+..++  ..++.++
T Consensus       197 ~~lK~L~l~~CGls~k~V~~~~~~fP-sl~~L~L~~N~~~----~~~~~~~~i~~~L~~LdLs~N~li~~~~~~~~~~l~  271 (505)
T KOG3207|consen  197 SHLKQLVLNSCGLSWKDVQWILLTFP-SLEVLYLEANEII----LIKATSTKILQTLQELDLSNNNLIDFDQGYKVGTLP  271 (505)
T ss_pred             hhhheEEeccCCCCHHHHHHHHHhCC-cHHHhhhhccccc----ceecchhhhhhHHhhccccCCccccccccccccccc
Confidence            556667776665543    2234566 7777777766421    112233455667888888888877666  5678888


Q ss_pred             CCcEEEccCCCcccc--chh-----HHhcCccccEeeccCCCCCcCC
Q 037304          215 LLRYLHLNIPSLKSL--PSS-----LLNSLLNLYTLDKPFSYIDHTV  254 (257)
Q Consensus       215 ~L~~L~l~~~~l~~l--P~~-----i~~~L~~L~~L~l~~~~l~~lP  254 (257)
                      .|+.|+++.|++.++  |+.     . ..+++|++|++..|++.+.|
T Consensus       272 ~L~~Lnls~tgi~si~~~d~~s~~kt-~~f~kL~~L~i~~N~I~~w~  317 (505)
T KOG3207|consen  272 GLNQLNLSSTGIASIAEPDVESLDKT-HTFPKLEYLNISENNIRDWR  317 (505)
T ss_pred             chhhhhccccCcchhcCCCccchhhh-cccccceeeecccCcccccc
Confidence            899999988887743  554     2 36788999999888875544

>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]

Probab=96.61  E-value=0.0027  Score=54.43  Aligned_cols=87  Identities=21%  Similarity=0.101  Sum_probs=52.1

Q ss_pred             CccEEEeecCCCCCCCcccchHhhccCcccceEEEeCCCCc-----cCchhcCCCCCCcEEEccCCCcc-----ccchhH
Q 037304          164 FLHSLLHLTSGSHYLNPTYCEKICKMFKFLRVLDLGSLVLI-----RYPFEIENLFLLRYLHLNIPSLK-----SLPSSL  233 (257)
Q Consensus       164 ~Lrsl~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~l~-----~lp~~i~~L~~L~~L~l~~~~l~-----~lP~~i  233 (257)
                      .+..+.+..+.....-.......|..+++|++|||..|.++     .+-..++.+++|+.|+++.|.++     .+-..+
T Consensus       186 ~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~dcll~~~Ga~a~~~al  265 (382)
T KOG1909|consen  186 TLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLGDCLLENEGAIAFVDAL  265 (382)
T ss_pred             ccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeecccccccccccHHHHHHHH
Confidence            55666666555432111345566777888888888877765     34455666777777777777654     233333


Q ss_pred             HhcCccccEeeccCCCC
Q 037304          234 LNSLLNLYTLDKPFSYI  250 (257)
Q Consensus       234 ~~~L~~L~~L~l~~~~l  250 (257)
                      -...++|++|++.+|.+
T Consensus       266 ~~~~p~L~vl~l~gNeI  282 (382)
T KOG1909|consen  266 KESAPSLEVLELAGNEI  282 (382)
T ss_pred             hccCCCCceeccCcchh
Confidence            23345666666666653

>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]

Probab=96.60  E-value=0.001  Score=59.74  Aligned_cols=88  Identities=23%  Similarity=0.232  Sum_probs=61.8

Q ss_pred             ccCCCCCccEEEeecCCCCCCCcccchHhhccCcccceEEEeCCCCccCchhcCCCCCCcEEEccCCCccccchhHHhcC
Q 037304          158 LDHFDSFLHSLLHLTSGSHYLNPTYCEKICKMFKFLRVLDLGSLVLIRYPFEIENLFLLRYLHLNIPSLKSLPSSLLNSL  237 (257)
Q Consensus       158 ~~~~~~~Lrsl~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~l~~lp~~i~~L~~L~~L~l~~~~l~~lP~~i~~~L  237 (257)
                      ...+. .+..+.+.++...     -....+..+.+|++|++++|.|..+. .+..++.|+.|++++|.++.++..  ..+
T Consensus        91 l~~~~-~l~~l~l~~n~i~-----~i~~~l~~~~~L~~L~ls~N~I~~i~-~l~~l~~L~~L~l~~N~i~~~~~~--~~l  161 (414)
T KOG0531|consen   91 LSKLK-SLEALDLYDNKIE-----KIENLLSSLVNLQVLDLSFNKITKLE-GLSTLTLLKELNLSGNLISDISGL--ESL  161 (414)
T ss_pred             ccccc-ceeeeeccccchh-----hcccchhhhhcchheecccccccccc-chhhccchhhheeccCcchhccCC--ccc
Confidence            34455 6777777666553     12222667888888888888887664 366677788888888888877554  458


Q ss_pred             ccccEeeccCCCCCcCC
Q 037304          238 LNLYTLDKPFSYIDHTV  254 (257)
Q Consensus       238 ~~L~~L~l~~~~l~~lP  254 (257)
                      .+|+.+++.+|.+..++
T Consensus       162 ~~L~~l~l~~n~i~~ie  178 (414)
T KOG0531|consen  162 KSLKLLDLSYNRIVDIE  178 (414)
T ss_pred             hhhhcccCCcchhhhhh
Confidence            88888888888766554

>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]

Probab=96.53  E-value=0.0036  Score=49.89  Aligned_cols=86  Identities=22%  Similarity=0.133  Sum_probs=65.7

Q ss_pred             ccccCCCCCccEEEeecCCCCCCCcccchHhhccCcccceEEEeCCCCccCc--hhcCCCCCCcEEEccCCCccccch--
Q 037304          156 AFLDHFDSFLHSLLHLTSGSHYLNPTYCEKICKMFKFLRVLDLGSLVLIRYP--FEIENLFLLRYLHLNIPSLKSLPS--  231 (257)
Q Consensus       156 ~~~~~~~~~Lrsl~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~l~~lp--~~i~~L~~L~~L~l~~~~l~~lP~--  231 (257)
                      .....++ .|.+|.+..+...    .+-+..-..+++|.+|.|.+|++.++-  +.+..++.|+||.+-+|.++..+.  
T Consensus        58 ~~lp~l~-rL~tLll~nNrIt----~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~Ltll~Npv~~k~~YR  132 (233)
T KOG1644|consen   58 DNLPHLP-RLHTLLLNNNRIT----RIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEYLTLLGNPVEHKKNYR  132 (233)
T ss_pred             ccCCCcc-ccceEEecCCcce----eeccchhhhccccceEEecCcchhhhhhcchhccCCccceeeecCCchhcccCce
Confidence            4556777 9999999988865    344444556778999999999987553  346678899999999998875543  


Q ss_pred             --hHHhcCccccEeeccC
Q 037304          232 --SLLNSLLNLYTLDKPF  247 (257)
Q Consensus       232 --~i~~~L~~L~~L~l~~  247 (257)
                        -+ .++++|++||.++
T Consensus       133 ~yvl-~klp~l~~LDF~k  149 (233)
T KOG1644|consen  133 LYVL-YKLPSLRTLDFQK  149 (233)
T ss_pred             eEEE-EecCcceEeehhh
Confidence              24 8999999999865

>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]

Probab=96.53  E-value=0.003  Score=54.23  Aligned_cols=91  Identities=14%  Similarity=0.042  Sum_probs=73.1

Q ss_pred             cCCCCCccEEEeecCCCCCCCcccchHhhccCcccceEEEeCCCCc-----cCchhcCCCCCCcEEEccCCCcc-----c
Q 037304          159 DHFDSFLHSLLHLTSGSHYLNPTYCEKICKMFKFLRVLDLGSLVLI-----RYPFEIENLFLLRYLHLNIPSLK-----S  228 (257)
Q Consensus       159 ~~~~~~Lrsl~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~l~-----~lp~~i~~L~~L~~L~l~~~~l~-----~  228 (257)
                      .+.+ +||++++..+.............|+..+.|+.+.++.|.+.     -+-..+..++||+.|+|+.|-++     .
T Consensus       154 ~~~~-~Lrv~i~~rNrlen~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~  232 (382)
T KOG1909|consen  154 ASKP-KLRVFICGRNRLENGGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVA  232 (382)
T ss_pred             CCCc-ceEEEEeeccccccccHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHH
Confidence            3455 99999998887765455667788999999999999999865     23466788999999999998775     4


Q ss_pred             cchhHHhcCccccEeeccCCCCC
Q 037304          229 LPSSLLNSLLNLYTLDKPFSYID  251 (257)
Q Consensus       229 lP~~i~~~L~~L~~L~l~~~~l~  251 (257)
                      +-..+ +.+++|+.|++++|.+.
T Consensus       233 LakaL-~s~~~L~El~l~dcll~  254 (382)
T KOG1909|consen  233 LAKAL-SSWPHLRELNLGDCLLE  254 (382)
T ss_pred             HHHHh-cccchheeecccccccc
Confidence            56666 78899999999999764

>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D

Probab=96.40  E-value=0.0016  Score=30.39  Aligned_cols=16  Identities=31%  Similarity=0.231  Sum_probs=7.0

Q ss_pred             cccEeeccCCCCCcCC
Q 037304          239 NLYTLDKPFSYIDHTV  254 (257)
Q Consensus       239 ~L~~L~l~~~~l~~lP  254 (257)
                      +|++|++++|+++++|
T Consensus         2 ~L~~L~l~~n~L~~lP   17 (17)
T PF13504_consen    2 NLRTLDLSNNRLTSLP   17 (17)
T ss_dssp             T-SEEEETSS--SSE-
T ss_pred             ccCEEECCCCCCCCCc
Confidence            4556666666655554

...

>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]

Probab=96.24  E-value=0.002  Score=57.86  Aligned_cols=104  Identities=17%  Similarity=0.130  Sum_probs=78.5

Q ss_pred             CcEEEEEEeCCCCcc-cc-ccCCCCCccEEEeecCCCCCCCcccchHhhccCcccceEEEeCCCCccCchhcCCCCCCcE
Q 037304          141 ENVKRFTAHGNLNDF-AF-LDHFDSFLHSLLHLTSGSHYLNPTYCEKICKMFKFLRVLDLGSLVLIRYPFEIENLFLLRY  218 (257)
Q Consensus       141 ~~~r~L~~~~~~~~~-~~-~~~~~~~Lrsl~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~l~~lp~~i~~L~~L~~  218 (257)
                      .....+.+..+...- .. ...+. +|+.|.+..+....      -..+..+..|+.|++++|.+..++. +..++.|+.
T Consensus        95 ~~l~~l~l~~n~i~~i~~~l~~~~-~L~~L~ls~N~I~~------i~~l~~l~~L~~L~l~~N~i~~~~~-~~~l~~L~~  166 (414)
T KOG0531|consen   95 KSLEALDLYDNKIEKIENLLSSLV-NLQVLDLSFNKITK------LEGLSTLTLLKELNLSGNLISDISG-LESLKSLKL  166 (414)
T ss_pred             cceeeeeccccchhhcccchhhhh-cchheecccccccc------ccchhhccchhhheeccCcchhccC-Cccchhhhc
Confidence            667777777777654 34 56678 99999998887642      1445667779999999999886653 555889999


Q ss_pred             EEccCCCccccchh-HHhcCccccEeeccCCCCCcC
Q 037304          219 LHLNIPSLKSLPSS-LLNSLLNLYTLDKPFSYIDHT  253 (257)
Q Consensus       219 L~l~~~~l~~lP~~-i~~~L~~L~~L~l~~~~l~~l  253 (257)
                      +++++|.+..++.. . ..+.+|+.+.+.+|.+..+
T Consensus       167 l~l~~n~i~~ie~~~~-~~~~~l~~l~l~~n~i~~i  201 (414)
T KOG0531|consen  167 LDLSYNRIVDIENDEL-SELISLEELDLGGNSIREI  201 (414)
T ss_pred             ccCCcchhhhhhhhhh-hhccchHHHhccCCchhcc
Confidence            99999998888773 4 6788999999988875543

>KOG2982 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.18  E-value=0.0024  Score=53.87  Aligned_cols=89  Identities=20%  Similarity=0.059  Sum_probs=64.4

Q ss_pred             CCCCCccEEEeecCCCCCCCcccchHhhccCcccceEEEeCCCCccCchhc-CCCCCCcEEEccCCCcc--ccchhHHhc
Q 037304          160 HFDSFLHSLLHLTSGSHYLNPTYCEKICKMFKFLRVLDLGSLVLIRYPFEI-ENLFLLRYLHLNIPSLK--SLPSSLLNS  236 (257)
Q Consensus       160 ~~~~~Lrsl~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~l~~lp~~i-~~L~~L~~L~l~~~~l~--~lP~~i~~~  236 (257)
                      ... .++.+.+.++...  ...-...++.+|+.|++|+++.|++.....+. -.+++|+.|-|.|+.+.  ..-... ..
T Consensus        69 ~~~-~v~elDL~~N~iS--dWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~L~w~~~~s~l-~~  144 (418)
T KOG2982|consen   69 SVT-DVKELDLTGNLIS--DWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTGLSWTQSTSSL-DD  144 (418)
T ss_pred             Hhh-hhhhhhcccchhc--cHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEEEEEcCCCCChhhhhhhh-hc
Confidence            344 6777777776554  33445577899999999999999876433333 36779999999998764  555566 88


Q ss_pred             CccccEeeccCCCCCc
Q 037304          237 LLNLYTLDKPFSYIDH  252 (257)
Q Consensus       237 L~~L~~L~l~~~~l~~  252 (257)
                      ++.++.|.++.|++.+
T Consensus       145 lP~vtelHmS~N~~rq  160 (418)
T KOG2982|consen  145 LPKVTELHMSDNSLRQ  160 (418)
T ss_pred             chhhhhhhhccchhhh
Confidence            8888889888886543

>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]

Probab=96.02  E-value=0.0011  Score=62.15  Aligned_cols=81  Identities=23%  Similarity=0.271  Sum_probs=61.4

Q ss_pred             CCCCccEEEeecCCCCCCCcccchHhhccCcccceEEEeCCCCccCch-hcCCCCCCcEEEccCCCccccchhHHhcCcc
Q 037304          161 FDSFLHSLLHLTSGSHYLNPTYCEKICKMFKFLRVLDLGSLVLIRYPF-EIENLFLLRYLHLNIPSLKSLPSSLLNSLLN  239 (257)
Q Consensus       161 ~~~~Lrsl~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~l~~lp~-~i~~L~~L~~L~l~~~~l~~lP~~i~~~L~~  239 (257)
                      ++ .+++|.+..+....     . ..+..++.|+.|||+.|.+..+|. +...+ +|..|.+++|.+++| .+| .+|.+
T Consensus       186 l~-ale~LnLshNk~~~-----v-~~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc-~L~~L~lrnN~l~tL-~gi-e~Lks  255 (1096)
T KOG1859|consen  186 LP-ALESLNLSHNKFTK-----V-DNLRRLPKLKHLDLSYNCLRHVPQLSMVGC-KLQLLNLRNNALTTL-RGI-ENLKS  255 (1096)
T ss_pred             HH-Hhhhhccchhhhhh-----h-HHHHhcccccccccccchhccccccchhhh-hheeeeecccHHHhh-hhH-Hhhhh
Confidence            44 77888887776531     2 477888999999999999887774 22233 389999999988888 456 79999


Q ss_pred             ccEeeccCCCCC
Q 037304          240 LYTLDKPFSYID  251 (257)
Q Consensus       240 L~~L~l~~~~l~  251 (257)
                      |+.||+++|-+.
T Consensus       256 L~~LDlsyNll~  267 (1096)
T KOG1859|consen  256 LYGLDLSYNLLS  267 (1096)
T ss_pred             hhccchhHhhhh
Confidence            999999988644

>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]

Probab=96.01  E-value=0.002  Score=56.81  Aligned_cols=88  Identities=20%  Similarity=0.135  Sum_probs=63.7

Q ss_pred             CCCCCccEEEeecCCCCCCCcccchHhhccCcccceEEEeCCC-CccCchhcCCCCCCcEEEccCCCccccc--hhHHhc
Q 037304          160 HFDSFLHSLLHLTSGSHYLNPTYCEKICKMFKFLRVLDLGSLV-LIRYPFEIENLFLLRYLHLNIPSLKSLP--SSLLNS  236 (257)
Q Consensus       160 ~~~~~Lrsl~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~-l~~lp~~i~~L~~L~~L~l~~~~l~~lP--~~i~~~  236 (257)
                      .++ +++.|.+.++..   ...-.......+++|.+|+|.+|. +...-.+...+..|+.|+|++|++-..|  .-+ +.
T Consensus       195 ~l~-~lK~L~l~~CGl---s~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~~~~~~~-~~  269 (505)
T KOG3207|consen  195 LLS-HLKQLVLNSCGL---SWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLIDFDQGYKV-GT  269 (505)
T ss_pred             hhh-hhheEEeccCCC---CHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCccccccccccc-cc
Confidence            445 777777777766   334456677888999999999884 3222222334567899999999887777  556 88


Q ss_pred             CccccEeeccCCCCCc
Q 037304          237 LLNLYTLDKPFSYIDH  252 (257)
Q Consensus       237 L~~L~~L~l~~~~l~~  252 (257)
                      |+.|..|+++.|.+.+
T Consensus       270 l~~L~~Lnls~tgi~s  285 (505)
T KOG3207|consen  270 LPGLNQLNLSSTGIAS  285 (505)
T ss_pred             ccchhhhhccccCcch
Confidence            9999999999998664

>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D

Probab=95.78  E-value=0.0057  Score=28.51  Aligned_cols=16  Identities=50%  Similarity=0.565  Sum_probs=6.3

Q ss_pred             CCcEEEccCCCccccc
Q 037304          215 LLRYLHLNIPSLKSLP  230 (257)
Q Consensus       215 ~L~~L~l~~~~l~~lP  230 (257)
                      +|+.|++++|+++++|
T Consensus         2 ~L~~L~l~~n~L~~lP   17 (17)
T PF13504_consen    2 NLRTLDLSNNRLTSLP   17 (17)
T ss_dssp             T-SEEEETSS--SSE-
T ss_pred             ccCEEECCCCCCCCCc
Confidence            4555555555555444

...

>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=95.47  E-value=0.01  Score=49.05  Aligned_cols=91  Identities=19%  Similarity=0.039  Sum_probs=52.7

Q ss_pred             ccccCCCCCccEEEeecCCCCCCCcccchHhhccCcccceEEEeCCCCccC--chhcCCCCCCcEEEccCCCcccc---c
Q 037304          156 AFLDHFDSFLHSLLHLTSGSHYLNPTYCEKICKMFKFLRVLDLGSLVLIRY--PFEIENLFLLRYLHLNIPSLKSL---P  230 (257)
Q Consensus       156 ~~~~~~~~~Lrsl~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~l~~l--p~~i~~L~~L~~L~l~~~~l~~l---P  230 (257)
                      .....++ +|+.|.++.+...  ...-++.....+++|++|++++|.+..+  -.....+.+|..|++..|....+   -
T Consensus        59 ~~~P~Lp-~LkkL~lsdn~~~--~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~pl~~l~nL~~Ldl~n~~~~~l~dyr  135 (260)
T KOG2739|consen   59 TNFPKLP-KLKKLELSDNYRR--VSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRPLKELENLKSLDLFNCSVTNLDDYR  135 (260)
T ss_pred             ccCCCcc-hhhhhcccCCccc--ccccceehhhhCCceeEEeecCCccccccccchhhhhcchhhhhcccCCccccccHH
Confidence            3455666 7777777766321  1112233345558888888888886631  12244566677777777655433   2


Q ss_pred             hhHHhcCccccEeeccCCC
Q 037304          231 SSLLNSLLNLYTLDKPFSY  249 (257)
Q Consensus       231 ~~i~~~L~~L~~L~l~~~~  249 (257)
                      ..+|.-+++|.+||--...
T Consensus       136 e~vf~ll~~L~~LD~~dv~  154 (260)
T KOG2739|consen  136 EKVFLLLPSLKYLDGCDVD  154 (260)
T ss_pred             HHHHHHhhhhccccccccC
Confidence            3454566777777754443

>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]

Probab=95.05  E-value=0.0035  Score=58.80  Aligned_cols=70  Identities=16%  Similarity=0.163  Sum_probs=52.5

Q ss_pred             cchHhhccCcccceEEEeCCCCccCchhcCCCCCCcEEEccCCCccccchhHHhcCccccEeeccCCCCCcC
Q 037304          182 YCEKICKMFKFLRVLDLGSLVLIRYPFEIENLFLLRYLHLNIPSLKSLPSSLLNSLLNLYTLDKPFSYIDHT  253 (257)
Q Consensus       182 ~~~~~~~~l~~Lr~L~L~~~~l~~lp~~i~~L~~L~~L~l~~~~l~~lP~~i~~~L~~L~~L~l~~~~l~~l  253 (257)
                      ..+..+.-++.|+.|+|+.|++...- .+..|++|+.|||+.|.+..+|.-- ..=..|+.|.+++|.+++|
T Consensus       178 ~mD~SLqll~ale~LnLshNk~~~v~-~Lr~l~~LkhLDlsyN~L~~vp~l~-~~gc~L~~L~lrnN~l~tL  247 (1096)
T KOG1859|consen  178 LMDESLQLLPALESLNLSHNKFTKVD-NLRRLPKLKHLDLSYNCLRHVPQLS-MVGCKLQLLNLRNNALTTL  247 (1096)
T ss_pred             hHHHHHHHHHHhhhhccchhhhhhhH-HHHhcccccccccccchhccccccc-hhhhhheeeeecccHHHhh
Confidence            34566777788889999999887664 6778888999999998888887632 2223488999998876554

>smart00370 LRR Leucine-rich repeats, outliers

Probab=94.86  E-value=0.016  Score=30.07  Aligned_cols=19  Identities=42%  Similarity=0.417  Sum_probs=10.4

Q ss_pred             CCCcEEEccCCCccccchh
Q 037304          214 FLLRYLHLNIPSLKSLPSS  232 (257)
Q Consensus       214 ~~L~~L~l~~~~l~~lP~~  232 (257)
                      ++|++|+|++|.++.+|..
T Consensus         2 ~~L~~L~L~~N~l~~lp~~   20 (26)
T smart00370        2 PNLRELDLSNNQLSSLPPG   20 (26)
T ss_pred             CCCCEEECCCCcCCcCCHH
Confidence            4455555555555555544

>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily

Probab=94.86  E-value=0.016  Score=30.07  Aligned_cols=19  Identities=42%  Similarity=0.417  Sum_probs=10.4

Q ss_pred             CCCcEEEccCCCccccchh
Q 037304          214 FLLRYLHLNIPSLKSLPSS  232 (257)
Q Consensus       214 ~~L~~L~l~~~~l~~lP~~  232 (257)
                      ++|++|+|++|.++.+|..
T Consensus         2 ~~L~~L~L~~N~l~~lp~~   20 (26)
T smart00369        2 PNLRELDLSNNQLSSLPPG   20 (26)
T ss_pred             CCCCEEECCCCcCCcCCHH
Confidence            4455555555555555544

>smart00370 LRR Leucine-rich repeats, outliers

Probab=94.62  E-value=0.031  Score=28.95  Aligned_cols=20  Identities=25%  Similarity=0.155  Sum_probs=12.6

Q ss_pred             CccccEeeccCCCCCcCCCC
Q 037304          237 LLNLYTLDKPFSYIDHTVDE  256 (257)
Q Consensus       237 L~~L~~L~l~~~~l~~lP~~  256 (257)
                      |.+|++|+|.+|.+..+|++
T Consensus         1 L~~L~~L~L~~N~l~~lp~~   20 (26)
T smart00370        1 LPNLRELDLSNNQLSSLPPG   20 (26)
T ss_pred             CCCCCEEECCCCcCCcCCHH
Confidence            35666666666666666653

>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily

Probab=94.62  E-value=0.031  Score=28.95  Aligned_cols=20  Identities=25%  Similarity=0.155  Sum_probs=12.6

Q ss_pred             CccccEeeccCCCCCcCCCC
Q 037304          237 LLNLYTLDKPFSYIDHTVDE  256 (257)
Q Consensus       237 L~~L~~L~l~~~~l~~lP~~  256 (257)
                      |.+|++|+|.+|.+..+|++
T Consensus         1 L~~L~~L~L~~N~l~~lp~~   20 (26)
T smart00369        1 LPNLRELDLSNNQLSSLPPG   20 (26)
T ss_pred             CCCCCEEECCCCcCCcCCHH
Confidence            35666666666666666653

>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=94.60  E-value=0.016  Score=47.89  Aligned_cols=67  Identities=22%  Similarity=0.158  Sum_probs=50.4

Q ss_pred             HhhccCcccceEEEeCC--CCc-cCchhcCCCCCCcEEEccCCCcc---ccchhHHhcCccccEeeccCCCCCcC
Q 037304          185 KICKMFKFLRVLDLGSL--VLI-RYPFEIENLFLLRYLHLNIPSLK---SLPSSLLNSLLNLYTLDKPFSYIDHT  253 (257)
Q Consensus       185 ~~~~~l~~Lr~L~L~~~--~l~-~lp~~i~~L~~L~~L~l~~~~l~---~lP~~i~~~L~~L~~L~l~~~~l~~l  253 (257)
                      ..|..+++|+.|.++.|  .+. .++-....+++|++|++++|+++   ++++ . .+|.+|..||+..|....+
T Consensus        59 ~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~p-l-~~l~nL~~Ldl~n~~~~~l  131 (260)
T KOG2739|consen   59 TNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRP-L-KELENLKSLDLFNCSVTNL  131 (260)
T ss_pred             ccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccch-h-hhhcchhhhhcccCCcccc
Confidence            45667889999999999  433 56655666799999999999865   4443 3 5788899999998875443

>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]

Probab=94.47  E-value=0.042  Score=43.97  Aligned_cols=82  Identities=18%  Similarity=0.080  Sum_probs=57.3

Q ss_pred             CccEEEeecCCCCCCCcccchHhhccCcccceEEEeCCCCccCchhcCC-CCCCcEEEccCCCccccch--hHHhcCccc
Q 037304          164 FLHSLLHLTSGSHYLNPTYCEKICKMFKFLRVLDLGSLVLIRYPFEIEN-LFLLRYLHLNIPSLKSLPS--SLLNSLLNL  240 (257)
Q Consensus       164 ~Lrsl~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~l~~lp~~i~~-L~~L~~L~l~~~~l~~lP~--~i~~~L~~L  240 (257)
                      +...+.+.++..-      -...|..++.|.+|.++.|.|..+-+.++. +++|..|.|.+|++.++-+  .+ ..++.|
T Consensus        43 ~~d~iDLtdNdl~------~l~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pL-a~~p~L  115 (233)
T KOG1644|consen   43 QFDAIDLTDNDLR------KLDNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDLDPL-ASCPKL  115 (233)
T ss_pred             ccceecccccchh------hcccCCCccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhcchh-ccCCcc
Confidence            3445555555432      235678888999999999999888666665 5679999999988776532  23 456788


Q ss_pred             cEeeccCCCCCc
Q 037304          241 YTLDKPFSYIDH  252 (257)
Q Consensus       241 ~~L~l~~~~l~~  252 (257)
                      ++|.+-+|.+..
T Consensus       116 ~~Ltll~Npv~~  127 (233)
T KOG1644|consen  116 EYLTLLGNPVEH  127 (233)
T ss_pred             ceeeecCCchhc
Confidence            888887776543

>KOG2982 consensus Uncharacterized conserved protein [Function unknown]

Probab=94.02  E-value=0.035  Score=47.07  Aligned_cols=78  Identities=27%  Similarity=0.156  Sum_probs=53.9

Q ss_pred             EEEeecCCCCCCCcccchHhhccCcccceEEEeCCCCccC---chhcCCCCCCcEEEccCCCcc----ccchhHHhcCcc
Q 037304          167 SLLHLTSGSHYLNPTYCEKICKMFKFLRVLDLGSLVLIRY---PFEIENLFLLRYLHLNIPSLK----SLPSSLLNSLLN  239 (257)
Q Consensus       167 sl~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~l~~l---p~~i~~L~~L~~L~l~~~~l~----~lP~~i~~~L~~  239 (257)
                      -+.+.++...  ..+....+-...+.++-|||.+|.++..   -.-+.+|++|+.|+++.|.+.    .+|  .  .+.+
T Consensus        49 llvln~~~id--~~gd~~~~~~~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp--~--p~~n  122 (418)
T KOG2982|consen   49 LLVLNGSIID--NEGDVMLFGSSVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLP--L--PLKN  122 (418)
T ss_pred             hheecCCCCC--cchhHHHHHHHhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCc--c--cccc
Confidence            3344444443  3333444556678899999999998844   334567999999999998654    555  2  4578


Q ss_pred             ccEeeccCCCC
Q 037304          240 LYTLDKPFSYI  250 (257)
Q Consensus       240 L~~L~l~~~~l  250 (257)
                      |++|-|.|+++
T Consensus       123 l~~lVLNgT~L  133 (418)
T KOG2982|consen  123 LRVLVLNGTGL  133 (418)
T ss_pred             eEEEEEcCCCC
Confidence            99999988764

>KOG2123 consensus Uncharacterized conserved protein [Function unknown]

Probab=93.21  E-value=0.0097  Score=49.89  Aligned_cols=77  Identities=23%  Similarity=0.202  Sum_probs=49.0

Q ss_pred             CccEEEeecCCCCCCCcccchHhhccCcccceEEEeCCCCccCchhcCCCCCCcEEEccCCCccccch--hHHhcCcccc
Q 037304          164 FLHSLLHLTSGSHYLNPTYCEKICKMFKFLRVLDLGSLVLIRYPFEIENLFLLRYLHLNIPSLKSLPS--SLLNSLLNLY  241 (257)
Q Consensus       164 ~Lrsl~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~l~~lp~~i~~L~~L~~L~l~~~~l~~lP~--~i~~~L~~L~  241 (257)
                      +++.|.+.++...      --.+..+|+.|+||.|+-|.++.+- .+..+++|+.|.|+.|.|..+-+  -+ .+|++|+
T Consensus        20 ~vkKLNcwg~~L~------DIsic~kMp~lEVLsLSvNkIssL~-pl~rCtrLkElYLRkN~I~sldEL~YL-knlpsLr   91 (388)
T KOG2123|consen   20 NVKKLNCWGCGLD------DISICEKMPLLEVLSLSVNKISSLA-PLQRCTRLKELYLRKNCIESLDELEYL-KNLPSLR   91 (388)
T ss_pred             HhhhhcccCCCcc------HHHHHHhcccceeEEeeccccccch-hHHHHHHHHHHHHHhcccccHHHHHHH-hcCchhh
Confidence            5555656665543      1245677888888888888777663 35667777777777776665533  23 5666777


Q ss_pred             EeeccCC
Q 037304          242 TLDKPFS  248 (257)
Q Consensus       242 ~L~l~~~  248 (257)
                      +|=|..|
T Consensus        92 ~LWL~EN   98 (388)
T KOG2123|consen   92 TLWLDEN   98 (388)
T ss_pred             hHhhccC
Confidence            7666544

>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A

Probab=92.03  E-value=0.33  Score=35.40  Aligned_cols=103  Identities=15%  Similarity=0.132  Sum_probs=53.3

Q ss_pred             cEEEEEEeCCCCcc--ccccCCCCCccEEEeecCCCCCCCcccchHhhccCcccceEEEeCCCCccCc-hhcCCCCCCcE
Q 037304          142 NVKRFTAHGNLNDF--AFLDHFDSFLHSLLHLTSGSHYLNPTYCEKICKMFKFLRVLDLGSLVLIRYP-FEIENLFLLRY  218 (257)
Q Consensus       142 ~~r~L~~~~~~~~~--~~~~~~~~~Lrsl~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~l~~lp-~~i~~L~~L~~  218 (257)
                      .++.+.+......+  .....+. .++.+.+.+.-     ..+....|.+++.|+.+.+.. .+..++ ..+..+.+|+.
T Consensus        13 ~l~~i~~~~~~~~I~~~~F~~~~-~l~~i~~~~~~-----~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~~l~~   85 (129)
T PF13306_consen   13 NLESITFPNTIKKIGENAFSNCT-SLKSINFPNNL-----TSIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNCTNLKN   85 (129)
T ss_dssp             T--EEEETST--EE-TTTTTT-T-T-SEEEESSTT-----SCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-TTECE
T ss_pred             CCCEEEECCCeeEeChhhccccc-ccccccccccc-----cccceeeeecccccccccccc-cccccccccccccccccc
Confidence            45556555432222  2334566 77888776532     234556788888888888865 555554 34556888888


Q ss_pred             EEccCCCccccchhHHhcCccccEeeccCCCCCcCC
Q 037304          219 LHLNIPSLKSLPSSLLNSLLNLYTLDKPFSYIDHTV  254 (257)
Q Consensus       219 L~l~~~~l~~lP~~i~~~L~~L~~L~l~~~~l~~lP  254 (257)
                      +.+..+ +..++...|.+. +|+.+.+.. .+..++
T Consensus        86 i~~~~~-~~~i~~~~f~~~-~l~~i~~~~-~~~~i~  118 (129)
T PF13306_consen   86 IDIPSN-ITEIGSSSFSNC-NLKEINIPS-NITKIE  118 (129)
T ss_dssp             EEETTT--BEEHTTTTTT--T--EEE-TT-B-SS--
T ss_pred             cccCcc-ccEEchhhhcCC-CceEEEECC-CccEEC
Confidence            888764 777877775665 888888765 344444

>smart00364 LRR_BAC Leucine-rich repeats, bacterial type

Probab=90.47  E-value=0.17  Score=26.29  Aligned_cols=17  Identities=12%  Similarity=0.118  Sum_probs=11.7

Q ss_pred             cccEeeccCCCCCcCCC
Q 037304          239 NLYTLDKPFSYIDHTVD  255 (257)
Q Consensus       239 ~L~~L~l~~~~l~~lP~  255 (257)
                      +|+.|++++|++.+||+
T Consensus         3 ~L~~L~vs~N~Lt~LPe   19 (26)
T smart00364        3 SLKELNVSNNQLTSLPE   19 (26)
T ss_pred             ccceeecCCCccccCcc
Confidence            56667777777777765

>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A

Probab=90.28  E-value=1.3  Score=32.21  Aligned_cols=62  Identities=19%  Similarity=0.192  Sum_probs=23.1

Q ss_pred             chHhhccCcccceEEEeCCCCccCc-hhcCCCCCCcEEEccCCCccccchhHHhcCccccEeecc
Q 037304          183 CEKICKMFKFLRVLDLGSLVLIRYP-FEIENLFLLRYLHLNIPSLKSLPSSLLNSLLNLYTLDKP  246 (257)
Q Consensus       183 ~~~~~~~l~~Lr~L~L~~~~l~~lp-~~i~~L~~L~~L~l~~~~l~~lP~~i~~~L~~L~~L~l~  246 (257)
                      ....|..+++|+.+.+.++ +..++ ..+..++.|+++.+.. .+..++...|....+|+.+++.
T Consensus        27 ~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~~l~~i~~~   89 (129)
T PF13306_consen   27 GENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNCTNLKNIDIP   89 (129)
T ss_dssp             -TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-TTECEEEET
T ss_pred             Chhhccccccccccccccc-ccccceeeeecccccccccccc-cccccccccccccccccccccC
Confidence            3344455544555555442 33333 2233444455555533 3444444332334455555443

>KOG0473 consensus Leucine-rich repeat protein [Function unknown]

Probab=90.22  E-value=0.011  Score=48.33  Aligned_cols=64  Identities=13%  Similarity=-0.039  Sum_probs=37.7

Q ss_pred             HhhccCcccceEEEeCCCCccCchhcCCCCCCcEEEccCCCccccchhHHhcCccccEeeccCCC
Q 037304          185 KICKMFKFLRVLDLGSLVLIRYPFEIENLFLLRYLHLNIPSLKSLPSSLLNSLLNLYTLDKPFSY  249 (257)
Q Consensus       185 ~~~~~l~~Lr~L~L~~~~l~~lp~~i~~L~~L~~L~l~~~~l~~lP~~i~~~L~~L~~L~l~~~~  249 (257)
                      ..|+.++.|.-||++.+.+..+|...+.+..++.+++..|..+.+|.+. +++++++++++.+|.
T Consensus        59 ~n~s~~t~~~rl~~sknq~~~~~~d~~q~~e~~~~~~~~n~~~~~p~s~-~k~~~~k~~e~k~~~  122 (326)
T KOG0473|consen   59 KNFSILTRLVRLDLSKNQIKFLPKDAKQQRETVNAASHKNNHSQQPKSQ-KKEPHPKKNEQKKTE  122 (326)
T ss_pred             cchHHHHHHHHHhccHhhHhhChhhHHHHHHHHHHHhhccchhhCCccc-cccCCcchhhhccCc
Confidence            3344455555566666666666666666655666666555666666666 666666666665553

>KOG0473 consensus Leucine-rich repeat protein [Function unknown]

Probab=88.46  E-value=0.015  Score=47.51  Aligned_cols=69  Identities=22%  Similarity=0.147  Sum_probs=60.9

Q ss_pred             hccCcccceEEEeCCCCccCchhcCCCCCCcEEEccCCCccccchhHHhcCccccEeeccCCCCCcCCCC
Q 037304          187 CKMFKFLRVLDLGSLVLIRYPFEIENLFLLRYLHLNIPSLKSLPSSLLNSLLNLYTLDKPFSYIDHTVDE  256 (257)
Q Consensus       187 ~~~l~~Lr~L~L~~~~l~~lp~~i~~L~~L~~L~l~~~~l~~lP~~i~~~L~~L~~L~l~~~~l~~lP~~  256 (257)
                      +..++...+||++.+++..+-..++.++.|.-|+++.+.+..+|... +.+..+..+++-.|....+|.+
T Consensus        38 i~~~kr~tvld~~s~r~vn~~~n~s~~t~~~rl~~sknq~~~~~~d~-~q~~e~~~~~~~~n~~~~~p~s  106 (326)
T KOG0473|consen   38 IASFKRVTVLDLSSNRLVNLGKNFSILTRLVRLDLSKNQIKFLPKDA-KQQRETVNAASHKNNHSQQPKS  106 (326)
T ss_pred             hhccceeeeehhhhhHHHhhccchHHHHHHHHHhccHhhHhhChhhH-HHHHHHHHHHhhccchhhCCcc
Confidence            44567788999999998888888888999999999999999999999 9999999999988888888865

>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]

Probab=84.70  E-value=0.26  Score=42.03  Aligned_cols=62  Identities=27%  Similarity=0.140  Sum_probs=42.2

Q ss_pred             HhhccCcccceEEEeCCC-Cc-cCchhcCCCCCCcEEEccCCCccccchh---HHhcCccccEeeccCC
Q 037304          185 KICKMFKFLRVLDLGSLV-LI-RYPFEIENLFLLRYLHLNIPSLKSLPSS---LLNSLLNLYTLDKPFS  248 (257)
Q Consensus       185 ~~~~~l~~Lr~L~L~~~~-l~-~lp~~i~~L~~L~~L~l~~~~l~~lP~~---i~~~L~~L~~L~l~~~  248 (257)
                      ..-..+++|..|||+.|. ++ ..-..+-+++.|++|+++.|..- .|..   + +..+.|.+||+-+|
T Consensus       307 tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~lSlsRCY~i-~p~~~~~l-~s~psl~yLdv~g~  373 (419)
T KOG2120|consen  307 TLVRRCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQHLSLSRCYDI-IPETLLEL-NSKPSLVYLDVFGC  373 (419)
T ss_pred             HHHHhCCceeeeccccccccCchHHHHHHhcchheeeehhhhcCC-ChHHeeee-ccCcceEEEEeccc
Confidence            334678888888888876 54 44456677888888888887521 2322   3 56678888888776

>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]

Probab=84.45  E-value=0.14  Score=43.52  Aligned_cols=66  Identities=24%  Similarity=0.156  Sum_probs=33.0

Q ss_pred             hHhhccCcccceEEEeCCCCc-cCchhcCCCCCCcEEEccCCC-ccccch-hHHhcCccccEeeccCCC
Q 037304          184 EKICKMFKFLRVLDLGSLVLI-RYPFEIENLFLLRYLHLNIPS-LKSLPS-SLLNSLLNLYTLDKPFSY  249 (257)
Q Consensus       184 ~~~~~~l~~Lr~L~L~~~~l~-~lp~~i~~L~~L~~L~l~~~~-l~~lP~-~i~~~L~~L~~L~l~~~~  249 (257)
                      ...++.+++|+-|.++|+++. .+-..|.+=.+|+.|+++.++ +++--- -++.++..|+.|+++.|.
T Consensus       203 ~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~LNlsWc~  271 (419)
T KOG2120|consen  203 HGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDELNLSWCF  271 (419)
T ss_pred             HHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhhcCchHhh
Confidence            344555555666666665554 233444444556666665543 442211 122455555555555554

>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]

Probab=84.32  E-value=2.3  Score=35.97  Aligned_cols=47  Identities=15%  Similarity=-0.101  Sum_probs=25.9

Q ss_pred             ccccCCCCCccEEEeecCCCCCCCcccchHhhccCcccceEEEeCCCC
Q 037304          156 AFLDHFDSFLHSLLHLTSGSHYLNPTYCEKICKMFKFLRVLDLGSLVL  203 (257)
Q Consensus       156 ~~~~~~~~~Lrsl~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~l  203 (257)
                      +...+++ +++++.++.+.........+.+.+++...|..|.+++|.+
T Consensus        86 ~aLlkcp-~l~~v~LSDNAfg~~~~e~L~d~is~~t~l~HL~l~NnGl  132 (388)
T COG5238          86 KALLKCP-RLQKVDLSDNAFGSEFPEELGDLISSSTDLVHLKLNNNGL  132 (388)
T ss_pred             HHHhcCC-cceeeeccccccCcccchHHHHHHhcCCCceeEEeecCCC
Confidence            3445666 6666666666554322233445556666666666666554

>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily

Probab=80.10  E-value=1.3  Score=23.02  Aligned_cols=16  Identities=38%  Similarity=0.335  Sum_probs=9.7

Q ss_pred             CccccEeeccCCCCCc
Q 037304          237 LLNLYTLDKPFSYIDH  252 (257)
Q Consensus       237 L~~L~~L~l~~~~l~~  252 (257)
                      |.+|+.|+++.|+++.
T Consensus         1 L~~L~~L~L~~NkI~~   16 (26)
T smart00365        1 LTNLEELDLSQNKIKK   16 (26)
T ss_pred             CCccCEEECCCCccce
Confidence            3566666776666543

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	257
1z6t_A	591	APAF-1, apoptotic protease activating factor 1; ca	5e-09
2a5y_B	549	CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis	1e-08
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-06
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	8e-04

>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens} Length = 591

 Score = 55.2 bits (133), Expect = 5e-09
 Identities = 15/73 (20%), Positives = 24/73 (32%), Gaps = 10/73 (13%)

Query: 35  YCMLLFYLKLCCLYLSVFPVHFEISTKQLYQLWIAEGFIPNNNEATAERYLEQLINAGFV 94
             ML   +K     LS+     ++ TK L  LW  E           E  L++ +N   +
Sbjct: 372 VEMLREDIKDYYTDLSILQKDVKVPTKVLCILWDMETEE-------VEDILQEFVNKSLL 424

Query: 95  DAGKRSDRGRINT 107
                   G+   
Sbjct: 425 ---FCDRNGKSFR 434

>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A* Length = 549

 Score = 54.2 bits (130), Expect = 1e-08
 Identities = 11/69 (15%), Positives = 22/69 (31%), Gaps = 2/69 (2%)

Query: 35  YCMLLFYLKLCCLYLSVFPVHFEISTKQLYQLWIAEGFIPNNN--EATAERYLEQLINAG 92
             +L    +    +  V P   +I  K    +   +         +      L++L   G
Sbjct: 382 VEVLSDEDRSALAFAVVMPPGVDIPVKLWSCVIPVDICSNEEEQLDDEVADRLKRLSKRG 441

Query: 93  FVDAGKRSD 101
            + +GKR  
Sbjct: 442 ALLSGKRMP 450

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 47.9 bits (113), Expect = 2e-06
 Identities = 37/209 (17%), Positives = 67/209 (32%), Gaps = 42/209 (20%)

Query: 47  LY--LSVFPVHFEISTKQLYQLWIAEGFIPNNNEATAERYLEQLINAGFVDAGKRSDRGR 104
           ++  LSVFP    I T  L  +W       +  ++     + +L     V+  K+     
Sbjct: 374 MFDRLSVFPPSAHIPTILLSLIW------FDVIKSDVMVVVNKLHKYSLVE--KQPKEST 425

Query: 105 INTGFIPGRCSPALLTVAFEGEFVISPIMDQEVKLWENVKRFTAHGNL------NDFAFL 158
           I    IP                 +   ++ E  L    +    H N+      +D    
Sbjct: 426 I---SIPSI------------YLELKVKLENEYALH---RSIVDHYNIPKTFDSDDLI-P 466

Query: 159 DHFDSFLHSLL--HLTSGSHYLNPTYCEKICKMFKFLRVLDLGSLVLIRYPFEIENLFL- 215
            + D + +S +  HL +  H    T    +   F+FL                I N    
Sbjct: 467 PYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSILNTLQQ 526

Query: 216 ----LRYLHLNIPSLKSLPSSLLNSLLNL 240
                 Y+  N P  + L +++L+ L  +
Sbjct: 527 LKFYKPYICDNDPKYERLVNAILDFLPKI 555

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 39.2 bits (92), Expect = 8e-04
 Identities = 13/52 (25%), Positives = 25/52 (48%), Gaps = 1/52 (1%)

Query: 193 LRVLDLGSLVLIRYPFEIENLFLLRYLHLNIPSLKSLPSSLLNSLLNLYTLD 244
              L+L S+ L ++P +   L  L+++ ++   L  LP ++      L TL 
Sbjct: 83  RVALELRSVPLPQFPDQAFRLSHLQHMTIDAAGLMELPDTMQQ-FAGLETLT 133

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	257
2a5y_B	549	CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis	99.71
3sfz_A	1249	APAF-1, apoptotic peptidase activating factor 1; a	99.41
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	99.38
3e6j_A	229	Variable lymphocyte receptor diversity region; var	99.23
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.19
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	99.18
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	99.14
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	99.12
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	99.12
1z6t_A	591	APAF-1, apoptotic protease activating factor 1; ca	99.12
3e6j_A	229	Variable lymphocyte receptor diversity region; var	99.1
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	99.1
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	99.1
3m19_A	251	Variable lymphocyte receptor A diversity region; a	99.1
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	99.09
3m19_A	251	Variable lymphocyte receptor A diversity region; a	99.09
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	99.08
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	99.08
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.08
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.08
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	99.08
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	99.08
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	99.07
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	99.06
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	99.05
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	99.05
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	99.04
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	99.04
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	99.04
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	99.03
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	99.03
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	99.03
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	99.02
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	99.02
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	99.02
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	99.02
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	99.01
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	99.0
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	99.0
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	99.0
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	98.99
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	98.99
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	98.97
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	98.97
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	98.96
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	98.96
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	98.96
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	98.94
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	98.93
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	98.93
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	98.92
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	98.92
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	98.92
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	98.91
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	98.91
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	98.91
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	98.88
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	98.88
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	98.87
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	98.87
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	98.87
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	98.87
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	98.87
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	98.86
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	98.86
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	98.86
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	98.86
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	98.86
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	98.85
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	98.85
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	98.84
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	98.84
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	98.84
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	98.82
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	98.82
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	98.82
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	98.81
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	98.81
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	98.81
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	98.8
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	98.8
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	98.8
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	98.8
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	98.78
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	98.78
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	98.78
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	98.78
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	98.77
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	98.77
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	98.77
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	98.76
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	98.76
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	98.76
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	98.75
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	98.75
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	98.75
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	98.74
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	98.73
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	98.73
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	98.73
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	98.72
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	98.71
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	98.7
1o6v_A	466	Internalin A; bacterial infection, extracellular r	98.7
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	98.7
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	98.69
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	98.69
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	98.67
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	98.66
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	98.66
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	98.66
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	98.65
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	98.64
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	98.64
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	98.64
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	98.63
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	98.61
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	98.59
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	98.58
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	98.54
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	98.52
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	98.52
1o6v_A	466	Internalin A; bacterial infection, extracellular r	98.5
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	98.48
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	98.45
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	98.45
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	98.41
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	98.4
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	98.4
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	98.35
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	98.34
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	98.31
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	98.28
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	98.27
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	98.24
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	98.18
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	98.02
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	97.94
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	97.91
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	97.87
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	97.85
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	97.84
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	97.74
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	97.67
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	97.64
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	97.63
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	97.61
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	97.56
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	97.44
3rfe_A	130	Platelet glycoprotein IB beta chain; platelet surf	97.42
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	97.32
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	97.31
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	97.06
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	97.0
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	96.92
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	96.66
4fdw_A	401	Leucine rich hypothetical protein; putative cell s	96.52
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	96.16
4fdw_A	401	Leucine rich hypothetical protein; putative cell s	95.16
3rfe_A	130	Platelet glycoprotein IB beta chain; platelet surf	94.3
4h09_A	379	Hypothetical leucine rich repeat protein; two LRR_	93.21
4gt6_A	394	Cell surface protein; leucine rich repeats, putati	92.39
1pgv_A	197	TMD-1, tropomodulin TMD-1; structural genomics, PS	92.14
1pgv_A	197	TMD-1, tropomodulin TMD-1; structural genomics, PS	91.08
4fs7_A	394	Uncharacterized protein; leucine-rich repeats, pro	91.06
4h09_A	379	Hypothetical leucine rich repeat protein; two LRR_	90.98
4gt6_A	394	Cell surface protein; leucine rich repeats, putati	84.68
4fs7_A	394	Uncharacterized protein; leucine-rich repeats, pro	82.64

>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*

Probab=99.71  E-value=1.2e-18  Score=159.71  Aligned_cols=110  Identities=23%  Similarity=0.237  Sum_probs=86.1

Q ss_pred             hHHHh--hcccCCCCCCCcchHHHHHHhHhhhhHHHHHHHH-----------HhhcCCCCceecHHHHHHHHHHc--CCC
Q 037304            9 NYLFV--LDRKFVPVEALDEPRGLQVVAYCMLLFYLKLCCL-----------YLSVFPVHFEISTKQLYQLWIAE--GFI   73 (257)
Q Consensus         9 ~W~~~--l~~~~~~~~~~~~i~~~L~lSY~~L~~~lk~cfl-----------~~a~Fp~~~~i~~~~Li~~Wiae--g~i   73 (257)
                      .|+.+  +.+.++.. ..+++.++|++||++||.++|.||+           |||+||+++.|+    +++|+|+  ||+
T Consensus       344 ~w~~~~~l~~~l~~~-~~~~i~~~l~~Sy~~L~~~lk~~f~~Ls~~er~l~~~ls~fp~~~~i~----i~~w~a~~~G~i  418 (549)
T 2a5y_B          344 TFEKMAQLNNKLESR-GLVGVECITPYSYKSLAMALQRCVEVLSDEDRSALAFAVVMPPGVDIP----VKLWSCVIPVDI  418 (549)
T ss_dssp             SHHHHHHHHHHHHHH-CSSTTCCCSSSSSSSHHHHHHHHHHTSCHHHHHHTTGGGSSCTTCCEE----HHHHHHHSCC--
T ss_pred             hHHHHHHhHHHhhcc-cHHHHHHHHhcccccccHHHHHHHhccchhhhhHhhheeeeCCCCeee----eeeeeeecccee
Confidence            35443  33433332 2467999999999999999999999           999999999999    8999999  999


Q ss_pred             CCCc-----HHHHHHHHHHHHHCCCccceecCCCCCeeEEEeChhHHHHHHHhhccCCe
Q 037304           74 PNNN-----EATAERYLEQLINAGFVDAGKRSDRGRINTGFIPGRCSPALLTVAFEGEF  127 (257)
Q Consensus        74 ~~~~-----~~~~~~~~~~L~~r~li~~~~~~~~g~~~~~~mHdl~~dl~~~i~~~e~~  127 (257)
                      ...+     +++++ ||++|+++||+++...+   ....|+|||+||++|+.++.++++
T Consensus       419 ~~~~~~~~~~~~~~-~l~~L~~rsLl~~~~~~---~~~~~~mHdlv~~~a~~~~~~~~~  473 (549)
T 2a5y_B          419 CSNEEEQLDDEVAD-RLKRLSKRGALLSGKRM---PVLTFKIDHIIHMFLKHVVDAQTI  473 (549)
T ss_dssp             -----CCCTHHHHH-HHHHTTTBSSCSEEECS---SSCEEECCHHHHHHHHTTSCTHHH
T ss_pred             ccCCCCCCHHHHHH-HHHHHHHcCCeeEecCC---CceEEEeChHHHHHHHHHHHHHHH
Confidence            7543     77777 99999999999987643   346899999999999999887543

>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*

Probab=99.41  E-value=3.1e-13  Score=133.93  Aligned_cols=91  Identities=18%  Similarity=0.174  Sum_probs=81.0

Q ss_pred             cchHHHHHHhHhhhhHHHHHHHHHhhcCCCCceecHHHHHHHHHHcCCCCCCcHHHHHHHHHHHHHCCCccceecCCCCC
Q 037304           25 DEPRGLQVVAYCMLLFYLKLCCLYLSVFPVHFEISTKQLYQLWIAEGFIPNNNEATAERYLEQLINAGFVDAGKRSDRGR  104 (257)
Q Consensus        25 ~~i~~~L~lSY~~L~~~lk~cfl~~a~Fp~~~~i~~~~Li~~Wiaeg~i~~~~~~~~~~~~~~L~~r~li~~~~~~~~g~  104 (257)
                      +.+..++.+||+.||+++|.||+|||+||+++.|+++.++.+|.++       ++.++.++++|+++||++...   +|+
T Consensus       362 ~~~~~~l~~s~~~L~~~~~~~~~~l~~f~~~~~i~~~~~~~~~~~~-------~~~~~~~l~~L~~~sl~~~~~---~~~  431 (1249)
T 3sfz_A          362 EALDEAMSISVEMLREDIKDYYTDLSILQKDVKVPTKVLCVLWDLE-------TEEVEDILQEFVNKSLLFCNR---NGK  431 (1249)
T ss_dssp             HHHHHHHHHHHHTSCTTTHHHHHHGGGSCTTCCEEHHHHHHHHTCC-------HHHHHHHHHHHHHTTSCEEEE---SSS
T ss_pred             HHHHHHHHHHHHhCCHHHHHHHHHhCccCCCCeeCHHHHHHHhCCC-------HHHHHHHHHHHHhccceEEec---CCC
Confidence            4699999999999999999999999999999999999999999765       567899999999999999765   344


Q ss_pred             eeEEEeChhHHHHHHHhhccC
Q 037304          105 INTGFIPGRCSPALLTVAFEG  125 (257)
Q Consensus       105 ~~~~~mHdl~~dl~~~i~~~e  125 (257)
                      ...|+|||++|++++..+.++
T Consensus       432 ~~~~~~h~l~~~~~~~~~~~~  452 (1249)
T 3sfz_A          432 SFCYYLHDLQVDFLTEKNRSQ  452 (1249)
T ss_dssp             SEEEECCHHHHHHHHHHTGGG
T ss_pred             ceEEEecHHHHHHHHhhhhHH
Confidence            467999999999999887654

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A*

Probab=99.38  E-value=4.8e-13  Score=128.03  Aligned_cols=85  Identities=19%  Similarity=0.120  Sum_probs=75.0

Q ss_pred             CcchHHHHHHhHhhhhHHH-HHHHHHhhcCCCCceecHHHHHHHHHHcCCCCCCcHHHHHHHHHHHHHCCCccceecCCC
Q 037304           24 LDEPRGLQVVAYCMLLFYL-KLCCLYLSVFPVHFEISTKQLYQLWIAEGFIPNNNEATAERYLEQLINAGFVDAGKRSDR  102 (257)
Q Consensus        24 ~~~i~~~L~lSY~~L~~~l-k~cfl~~a~Fp~~~~i~~~~Li~~Wiaeg~i~~~~~~~~~~~~~~L~~r~li~~~~~~~~  102 (257)
                      .+.+..+|.+||+.||+++ |+||+|||+||+++.|+++.++.+|+++|      ++.++.++++|+++|||+...    
T Consensus       352 ~~~I~aaLelSYd~Lp~eelK~cFL~LAIFPed~~I~~elLa~LW~aeG------eedAe~~L~eLvdRSLLq~d~----  421 (1221)
T 1vt4_I          352 CDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVI------KSDVMVVVNKLHKYSLVEKQP----  421 (1221)
T ss_dssp             CHHHHHHHHHHHHHSCTTHHHHHHHHTTSSCTTSCEEHHHHHHHHCSSC------SHHHHHHHHHHHTSSSSSBCS----
T ss_pred             hhHHHHHHHHHHHhCCHHHHHHHHHHHhCCCCCCCCCHHHHHHHhcCCC------HHHHHHHHHHHHhhCCEEEeC----
Confidence            3689999999999999999 99999999999999999999999999988      235889999999999999842    


Q ss_pred             CCeeEEEeChhHHHHHH
Q 037304          103 GRINTGFIPGRCSPALL  119 (257)
Q Consensus       103 g~~~~~~mHdl~~dl~~  119 (257)
                       ....|+|||++++++.
T Consensus       422 -~~~rYrMHDLllELr~  437 (1221)
T 1vt4_I          422 -KESTISIPSIYLELKV  437 (1221)
T ss_dssp             -SSSEEBCCCHHHHHHH
T ss_pred             -CCCEEEehHHHHHHhc
Confidence             2257999999999763

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=99.23  E-value=3.7e-11  Score=97.72  Aligned_cols=109  Identities=21%  Similarity=0.212  Sum_probs=86.3

Q ss_pred             CcEEEEEEeCCCCcc---ccccCCCCCccEEEeecCCCCCCCcccchHhhccCcccceEEEeCCCCccCchh-cCCCCCC
Q 037304          141 ENVKRFTAHGNLNDF---AFLDHFDSFLHSLLHLTSGSHYLNPTYCEKICKMFKFLRVLDLGSLVLIRYPFE-IENLFLL  216 (257)
Q Consensus       141 ~~~r~L~~~~~~~~~---~~~~~~~~~Lrsl~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~l~~lp~~-i~~L~~L  216 (257)
                      ..++.|.+..+....   .....++ +|+.|.+.++...    .+.+..|..+++|++|+|++|.++.+|.. ++.+++|
T Consensus        40 ~~L~~L~Ls~n~i~~~~~~~~~~l~-~L~~L~L~~N~l~----~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L  114 (229)
T 3e6j_A           40 TNAQILYLHDNQITKLEPGVFDSLI-NLKELYLGSNQLG----ALPVGVFDSLTQLTVLDLGTNQLTVLPSAVFDRLVHL  114 (229)
T ss_dssp             TTCSEEECCSSCCCCCCTTTTTTCT-TCCEEECCSSCCC----CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTC
T ss_pred             CCCCEEEcCCCccCccCHHHhhCcc-CCcEEECCCCCCC----CcChhhcccCCCcCEEECCCCcCCccChhHhCcchhh
Confidence            567788887776553   2345677 8888888887753    44556778888999999999988887654 5788899


Q ss_pred             cEEEccCCCccccchhHHhcCccccEeeccCCCCCcCCC
Q 037304          217 RYLHLNIPSLKSLPSSLLNSLLNLYTLDKPFSYIDHTVD  255 (257)
Q Consensus       217 ~~L~l~~~~l~~lP~~i~~~L~~L~~L~l~~~~l~~lP~  255 (257)
                      ++|++++|.++.+|..+ +.+.+|++|++++|.+..+|.
T Consensus       115 ~~L~Ls~N~l~~lp~~~-~~l~~L~~L~L~~N~l~~~~~  152 (229)
T 3e6j_A          115 KELFMCCNKLTELPRGI-ERLTHLTHLALDQNQLKSIPH  152 (229)
T ss_dssp             CEEECCSSCCCSCCTTG-GGCTTCSEEECCSSCCCCCCT
T ss_pred             CeEeccCCcccccCccc-ccCCCCCEEECCCCcCCccCH
Confidence            99999999888899888 889999999999888887775

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=99.19  E-value=9.7e-11  Score=90.31  Aligned_cols=110  Identities=16%  Similarity=0.007  Sum_probs=92.4

Q ss_pred             CcEEEEEEeCCCCcc-ccccCCCCCccEEEeecCCCCCCCcccchHhhccCcccceEEEeCCCCccCc--hhcCCCCCCc
Q 037304          141 ENVKRFTAHGNLNDF-AFLDHFDSFLHSLLHLTSGSHYLNPTYCEKICKMFKFLRVLDLGSLVLIRYP--FEIENLFLLR  217 (257)
Q Consensus       141 ~~~r~L~~~~~~~~~-~~~~~~~~~Lrsl~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~l~~lp--~~i~~L~~L~  217 (257)
                      ..++.|.+..+.... .....++ +|+.|.+.++...    ..++..+..+++|++|++++|.+..+|  ..++.+++|+
T Consensus        49 ~~L~~L~l~~n~l~~~~~~~~l~-~L~~L~Ls~N~l~----~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~l~~l~~L~  123 (168)
T 2ell_A           49 VNLEFLSLINVGLISVSNLPKLP-KLKKLELSENRIF----GGLDMLAEKLPNLTHLNLSGNKLKDISTLEPLKKLECLK  123 (168)
T ss_dssp             GGCCEEEEESSCCCCCSSCCCCS-SCCEEEEESCCCC----SCCCHHHHHCTTCCEEECBSSSCCSSGGGGGGSSCSCCC
T ss_pred             CCCCEEeCcCCCCCChhhhccCC-CCCEEECcCCcCc----hHHHHHHhhCCCCCEEeccCCccCcchhHHHHhcCCCCC
Confidence            667888888876543 4556677 8999999988764    236677888999999999999999876  7899999999


Q ss_pred             EEEccCCCccccch----hHHhcCccccEeeccCCCCCcCCCC
Q 037304          218 YLHLNIPSLKSLPS----SLLNSLLNLYTLDKPFSYIDHTVDE  256 (257)
Q Consensus       218 ~L~l~~~~l~~lP~----~i~~~L~~L~~L~l~~~~l~~lP~~  256 (257)
                      +|++++|.+..+|.    .+ +.+++|++|++++|.+.++|++
T Consensus       124 ~L~l~~N~l~~~~~~~~~~~-~~l~~L~~L~l~~n~~~~~~~~  165 (168)
T 2ell_A          124 SLDLFNCEVTNLNDYRESVF-KLLPQLTYLDGYDREDQEAPDS  165 (168)
T ss_dssp             EEECCSSGGGTSTTHHHHHH-TTCSSCCEETTEETTSCBCCSS
T ss_pred             EEEeeCCcCcchHHHHHHHH-HhCccCcEecCCCCChhhcccc
Confidence            99999999999987    56 9999999999999999998874

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=99.18  E-value=9.4e-11  Score=94.72  Aligned_cols=110  Identities=17%  Similarity=0.161  Sum_probs=84.4

Q ss_pred             CcEEEEEEeCCCCcc-c--cccCCCCCccEEEeecCCCCCCCcccchHhhccCcccceEEEeCCCCccCchh-cCCCCCC
Q 037304          141 ENVKRFTAHGNLNDF-A--FLDHFDSFLHSLLHLTSGSHYLNPTYCEKICKMFKFLRVLDLGSLVLIRYPFE-IENLFLL  216 (257)
Q Consensus       141 ~~~r~L~~~~~~~~~-~--~~~~~~~~Lrsl~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~l~~lp~~-i~~L~~L  216 (257)
                      ..++.|.+..+.... +  ....++ +|+.|.+.++...    .+.+..|.++++|++|+|++|.+..+|.. +..+++|
T Consensus        32 ~~l~~L~l~~n~i~~i~~~~~~~l~-~L~~L~Ls~N~i~----~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L  106 (220)
T 2v9t_B           32 ETITEIRLEQNTIKVIPPGAFSPYK-KLRRIDLSNNQIS----ELAPDAFQGLRSLNSLVLYGNKITELPKSLFEGLFSL  106 (220)
T ss_dssp             TTCCEEECCSSCCCEECTTSSTTCT-TCCEEECCSSCCC----EECTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTC
T ss_pred             cCCCEEECCCCcCCCcCHhHhhCCC-CCCEEECCCCcCC----CcCHHHhhCCcCCCEEECCCCcCCccCHhHccCCCCC
Confidence            567788877776553 1  345677 8888888887653    45567888888899999999888888765 5778889


Q ss_pred             cEEEccCCCccccchhHHhcCccccEeeccCCCCCcCCC
Q 037304          217 RYLHLNIPSLKSLPSSLLNSLLNLYTLDKPFSYIDHTVD  255 (257)
Q Consensus       217 ~~L~l~~~~l~~lP~~i~~~L~~L~~L~l~~~~l~~lP~  255 (257)
                      ++|+|++|.++.++...|+.+++|++|++++|.+..+|.
T Consensus       107 ~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~  145 (220)
T 2v9t_B          107 QLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAK  145 (220)
T ss_dssp             CEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCT
T ss_pred             CEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECH
Confidence            999998888887754433888889999998888887765

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=99.14  E-value=1.9e-10  Score=91.82  Aligned_cols=110  Identities=20%  Similarity=0.207  Sum_probs=65.2

Q ss_pred             CcEEEEEEeCCCCcc-c--cccCCCCCccEEEeecCCCCCCCcccchHhhccCcccceEEEeCCCCccCchh-cCCCCCC
Q 037304          141 ENVKRFTAHGNLNDF-A--FLDHFDSFLHSLLHLTSGSHYLNPTYCEKICKMFKFLRVLDLGSLVLIRYPFE-IENLFLL  216 (257)
Q Consensus       141 ~~~r~L~~~~~~~~~-~--~~~~~~~~Lrsl~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~l~~lp~~-i~~L~~L  216 (257)
                      ..+++|.+..+.... +  ....++ +|+.|.+.++...    .+.+..|..+++|++|++++|.+..+|.. ++.+++|
T Consensus        28 ~~l~~L~l~~n~l~~~~~~~~~~l~-~L~~L~l~~n~l~----~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L  102 (208)
T 2o6s_A           28 AQTTYLDLETNSLKSLPNGVFDELT-SLTQLYLGGNKLQ----SLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQL  102 (208)
T ss_dssp             TTCSEEECCSSCCCCCCTTTTTTCT-TCSEEECCSSCCC----CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTC
T ss_pred             CCCcEEEcCCCccCcCChhhhcccc-cCcEEECCCCccC----ccChhhcCCCCCcCEEECCCCcCCccCHhHhcCccCC
Confidence            455666666554432 1  123555 6677766665442    33444556666667777766666665543 4666666


Q ss_pred             cEEEccCCCccccchhHHhcCccccEeeccCCCCCcCCC
Q 037304          217 RYLHLNIPSLKSLPSSLLNSLLNLYTLDKPFSYIDHTVD  255 (257)
Q Consensus       217 ~~L~l~~~~l~~lP~~i~~~L~~L~~L~l~~~~l~~lP~  255 (257)
                      ++|++++|.++.+|...|+++++|++|++++|.+..+|.
T Consensus       103 ~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~  141 (208)
T 2o6s_A          103 KELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPD  141 (208)
T ss_dssp             CEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCT
T ss_pred             CEEEcCCCcCcccCHhHhccCCcCCEEECCCCccceeCH
Confidence            666666666666665533666666666666666665554

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=99.12  E-value=1.8e-10  Score=89.69  Aligned_cols=89  Identities=20%  Similarity=0.116  Sum_probs=77.8

Q ss_pred             CCCccEEEeecCCCCCCCcccchHhhccCcccceEEEeCCCCccCchh-cCCCCCCcEEEccCCCccccchhHHhcCccc
Q 037304          162 DSFLHSLLHLTSGSHYLNPTYCEKICKMFKFLRVLDLGSLVLIRYPFE-IENLFLLRYLHLNIPSLKSLPSSLLNSLLNL  240 (257)
Q Consensus       162 ~~~Lrsl~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~l~~lp~~-i~~L~~L~~L~l~~~~l~~lP~~i~~~L~~L  240 (257)
                      . +++.|.+.++...    ...+..|.++++|+.|+|++|.+..+|.. ++.+++|++|+|++|.++.+|...|+.+++|
T Consensus        33 ~-~L~~L~Ls~N~l~----~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L  107 (174)
T 2r9u_A           33 T-DKQRLWLNNNQIT----KLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNHLKSIPRGAFDNLKSL  107 (174)
T ss_dssp             T-TCSEEECCSSCCC----CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTC
T ss_pred             C-CCcEEEeCCCCcc----ccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCCccceeCHHHhccccCC
Confidence            5 8999999988764    45678899999999999999999999876 5899999999999999999998743999999


Q ss_pred             cEeeccCCCCCcCCC
Q 037304          241 YTLDKPFSYIDHTVD  255 (257)
Q Consensus       241 ~~L~l~~~~l~~lP~  255 (257)
                      ++|++++|.+.-.|.
T Consensus       108 ~~L~L~~N~~~c~~~  122 (174)
T 2r9u_A          108 THIYLYNNPWDCECR  122 (174)
T ss_dssp             SEEECCSSCBCTTBG
T ss_pred             CEEEeCCCCcccccc
Confidence            999999998775553

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=99.12  E-value=2.8e-10  Score=88.53  Aligned_cols=106  Identities=20%  Similarity=0.211  Sum_probs=77.7

Q ss_pred             CcEEEEEEeCCCCcc-c--cccCCCCCccEEEeecCCCCCCCcccchHhhccCcccceEEEeCCCCccCchh-cCCCCCC
Q 037304          141 ENVKRFTAHGNLNDF-A--FLDHFDSFLHSLLHLTSGSHYLNPTYCEKICKMFKFLRVLDLGSLVLIRYPFE-IENLFLL  216 (257)
Q Consensus       141 ~~~r~L~~~~~~~~~-~--~~~~~~~~Lrsl~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~l~~lp~~-i~~L~~L  216 (257)
                      ..++.|.+..+.... +  ....++ +|+.|.+.++...    ...+..|..+++|+.|++++|.+..+|.. ++.+++|
T Consensus        28 ~~l~~L~l~~n~l~~~~~~~~~~l~-~L~~L~l~~n~l~----~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L  102 (177)
T 2o6r_A           28 SSATRLELESNKLQSLPHGVFDKLT-QLTKLSLSQNQIQ----SLPDGVFDKLTKLTILYLHENKLQSLPNGVFDKLTQL  102 (177)
T ss_dssp             TTCSEEECCSSCCCCCCTTTTTTCT-TCSEEECCSSCCC----CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTC
T ss_pred             CCCcEEEeCCCcccEeCHHHhcCcc-cccEEECCCCcce----EeChhHccCCCccCEEECCCCCccccCHHHhhCCccc
Confidence            567777777765443 2  234567 8888888777653    34556677888888888888888877654 5778888


Q ss_pred             cEEEccCCCccccchhHHhcCccccEeeccCCCCC
Q 037304          217 RYLHLNIPSLKSLPSSLLNSLLNLYTLDKPFSYID  251 (257)
Q Consensus       217 ~~L~l~~~~l~~lP~~i~~~L~~L~~L~l~~~~l~  251 (257)
                      ++|++++|.++.+|..+|..+++|++|++++|.+.
T Consensus       103 ~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~  137 (177)
T 2o6r_A          103 KELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWD  137 (177)
T ss_dssp             CEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred             CEEECcCCcceEeCHHHhcCCcccCEEEecCCCee
Confidence            88888888888888775477888888888888754

>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}

Probab=99.12  E-value=1.4e-10  Score=106.80  Aligned_cols=88  Identities=18%  Similarity=0.195  Sum_probs=76.8

Q ss_pred             cchHHHHHHhHhhhhHHHHHHHHHhhcCCCCceecHHHHHHHHHHcCCCCCCcHHHHHHHHHHHHHCCCccceecCCCCC
Q 037304           25 DEPRGLQVVAYCMLLFYLKLCCLYLSVFPVHFEISTKQLYQLWIAEGFIPNNNEATAERYLEQLINAGFVDAGKRSDRGR  104 (257)
Q Consensus        25 ~~i~~~L~lSY~~L~~~lk~cfl~~a~Fp~~~~i~~~~Li~~Wiaeg~i~~~~~~~~~~~~~~L~~r~li~~~~~~~~g~  104 (257)
                      ..+..++..||+.||++.|.||++||+||+++.|+.+.++.+|.++       .+.+..++++|+++||++...   ++.
T Consensus       362 ~~l~~~l~~s~~~L~~~~~~~l~~la~f~~~~~i~~~~l~~l~~~~-------~~~~~~~l~~L~~~~Ll~~~~---~~~  431 (591)
T 1z6t_A          362 EALDEAMSISVEMLREDIKDYYTDLSILQKDVKVPTKVLCILWDME-------TEEVEDILQEFVNKSLLFCDR---NGK  431 (591)
T ss_dssp             HHHHHHHHHHHHTSCTTTHHHHHHGGGCCTTCCEEHHHHHHHHTCC-------HHHHHHHHHHHHHTTSSEEEE---ETT
T ss_pred             HHHHHHHHHHHHhCCHHHHHHHHHccccCCCCccCHHHHHHHhccC-------HHHHHHHHHHHHhCcCeEEec---CCC
Confidence            4789999999999999999999999999999999999999999654       345788999999999998654   234


Q ss_pred             eeEEEeChhHHHHHHHhh
Q 037304          105 INTGFIPGRCSPALLTVA  122 (257)
Q Consensus       105 ~~~~~mHdl~~dl~~~i~  122 (257)
                      ...|+||+++++++....
T Consensus       432 ~~~~~~H~lv~~~~~~~~  449 (591)
T 1z6t_A          432 SFRYYLHDLQVDFLTEKN  449 (591)
T ss_dssp             EEEEECCHHHHHHHHHHT
T ss_pred             ccEEEEcHHHHHHHHhhh
Confidence            468999999999998773

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=99.10  E-value=3.1e-10  Score=92.15  Aligned_cols=90  Identities=21%  Similarity=0.170  Sum_probs=80.1

Q ss_pred             CCCccEEEeecCCCCCCCcccchHhhccCcccceEEEeCCCCccCch-hcCCCCCCcEEEccCCCccccchhHHhcCccc
Q 037304          162 DSFLHSLLHLTSGSHYLNPTYCEKICKMFKFLRVLDLGSLVLIRYPF-EIENLFLLRYLHLNIPSLKSLPSSLLNSLLNL  240 (257)
Q Consensus       162 ~~~Lrsl~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~l~~lp~-~i~~L~~L~~L~l~~~~l~~lP~~i~~~L~~L  240 (257)
                      + +++.|.+.++...    ...+..|..+++|+.|+|++|.+..+|. .++.+++|++|+|++|.++.+|...|+.+.+|
T Consensus        40 ~-~L~~L~Ls~n~i~----~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L  114 (229)
T 3e6j_A           40 T-NAQILYLHDNQIT----KLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQLTVLPSAVFDRLVHL  114 (229)
T ss_dssp             T-TCSEEECCSSCCC----CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTC
T ss_pred             C-CCCEEEcCCCccC----ccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCCCcCCccChhHhCcchhh
Confidence            5 8999999988764    4567789999999999999999998875 46899999999999999999988765899999


Q ss_pred             cEeeccCCCCCcCCCC
Q 037304          241 YTLDKPFSYIDHTVDE  256 (257)
Q Consensus       241 ~~L~l~~~~l~~lP~~  256 (257)
                      ++|++++|++..+|.+
T Consensus       115 ~~L~Ls~N~l~~lp~~  130 (229)
T 3e6j_A          115 KELFMCCNKLTELPRG  130 (229)
T ss_dssp             CEEECCSSCCCSCCTT
T ss_pred             CeEeccCCcccccCcc
Confidence            9999999999999875

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=99.10  E-value=2.7e-10  Score=95.87  Aligned_cols=111  Identities=20%  Similarity=0.037  Sum_probs=79.9

Q ss_pred             CcEEEEEEeCCCCcc-c-cccCCCCCccEEEeecCCCCCCCcccchHhhccCcccceEEEeCCCCccCchh-cCCCCCCc
Q 037304          141 ENVKRFTAHGNLNDF-A-FLDHFDSFLHSLLHLTSGSHYLNPTYCEKICKMFKFLRVLDLGSLVLIRYPFE-IENLFLLR  217 (257)
Q Consensus       141 ~~~r~L~~~~~~~~~-~-~~~~~~~~Lrsl~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~l~~lp~~-i~~L~~L~  217 (257)
                      ..++.|.+..+.... + ....++ +|+.|.+.++...    ...+..|.++++|+.|++++|.+..+|.. +..+++|+
T Consensus        77 ~~L~~L~Ls~N~l~~l~~~~~~l~-~L~~L~l~~N~l~----~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~  151 (290)
T 1p9a_G           77 PVLGTLDLSHNQLQSLPLLGQTLP-ALTVLDVSFNRLT----SLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLE  151 (290)
T ss_dssp             TTCCEEECCSSCCSSCCCCTTTCT-TCCEEECCSSCCC----CCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCC
T ss_pred             CcCCEEECCCCcCCcCchhhccCC-CCCEEECCCCcCc----ccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCC
Confidence            456666666655432 2 234566 7777777776653    34556778888888888888888877644 56788888


Q ss_pred             EEEccCCCccccchhHHhcCccccEeeccCCCCCcCCCC
Q 037304          218 YLHLNIPSLKSLPSSLLNSLLNLYTLDKPFSYIDHTVDE  256 (257)
Q Consensus       218 ~L~l~~~~l~~lP~~i~~~L~~L~~L~l~~~~l~~lP~~  256 (257)
                      +|++++|.++.+|..+|.++++|++|++++|.+..+|.+
T Consensus       152 ~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~ip~~  190 (290)
T 1p9a_G          152 KLSLANNNLTELPAGLLNGLENLDTLLLQENSLYTIPKG  190 (290)
T ss_dssp             EEECTTSCCSCCCTTTTTTCTTCCEEECCSSCCCCCCTT
T ss_pred             EEECCCCcCCccCHHHhcCcCCCCEEECCCCcCCccChh
Confidence            888888888888877657788888888888888888765

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=99.10  E-value=2.9e-10  Score=94.68  Aligned_cols=110  Identities=21%  Similarity=0.243  Sum_probs=67.4

Q ss_pred             CcEEEEEEeCCCCcc-cc--ccCCCCCccEEEeecCCCCCCCcccchHhhccCcccceEEEeCCCCccCchh-cCCCCCC
Q 037304          141 ENVKRFTAHGNLNDF-AF--LDHFDSFLHSLLHLTSGSHYLNPTYCEKICKMFKFLRVLDLGSLVLIRYPFE-IENLFLL  216 (257)
Q Consensus       141 ~~~r~L~~~~~~~~~-~~--~~~~~~~Lrsl~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~l~~lp~~-i~~L~~L  216 (257)
                      ..++.|.+..+.... +.  ...++ +|+.|.+.++...    ...+..|..+++|++|++++|.+..+|.. ++.+++|
T Consensus        85 ~~L~~L~L~~n~l~~~~~~~~~~l~-~L~~L~L~~n~l~----~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L  159 (272)
T 3rfs_A           85 TNLTYLILTGNQLQSLPNGVFDKLT-NLKELVLVENQLQ----SLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNL  159 (272)
T ss_dssp             TTCCEEECTTSCCCCCCTTTTTTCT-TCCEEECTTSCCC----CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTC
T ss_pred             CCCCEEECCCCccCccChhHhcCCc-CCCEEECCCCcCC----ccCHHHhccCCCCCEEECCCCccCccCHHHhccCccC
Confidence            455555555554332 11  24455 6666666655442    34445566677777777777777666543 4667777


Q ss_pred             cEEEccCCCccccchhHHhcCccccEeeccCCCCCcCCC
Q 037304          217 RYLHLNIPSLKSLPSSLLNSLLNLYTLDKPFSYIDHTVD  255 (257)
Q Consensus       217 ~~L~l~~~~l~~lP~~i~~~L~~L~~L~l~~~~l~~lP~  255 (257)
                      ++|++++|.++.+|...|+.+++|++|++++|.+..+|+
T Consensus       160 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~  198 (272)
T 3rfs_A          160 TELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLKSVPD  198 (272)
T ss_dssp             CEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCT
T ss_pred             CEEECCCCCcCccCHHHhcCCccCCEEECCCCcCCccCH
Confidence            777777777776666544677777777777777666654

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=99.10  E-value=2.8e-10  Score=93.57  Aligned_cols=110  Identities=22%  Similarity=0.208  Sum_probs=81.1

Q ss_pred             CcEEEEEEeCCCCcc--c-cccCCCCCccEEEeecCCCCCCCcccchHhhccCcccceEEEeCCCCccCchh-cCCCCCC
Q 037304          141 ENVKRFTAHGNLNDF--A-FLDHFDSFLHSLLHLTSGSHYLNPTYCEKICKMFKFLRVLDLGSLVLIRYPFE-IENLFLL  216 (257)
Q Consensus       141 ~~~r~L~~~~~~~~~--~-~~~~~~~~Lrsl~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~l~~lp~~-i~~L~~L  216 (257)
                      ..++.|.+..+....  + ....++ +|+.|.+.++...    ...+..|..+++|++|+|++|.+..+|.. ++.+++|
T Consensus        59 ~~L~~L~L~~n~l~~~~~~~~~~l~-~L~~L~L~~n~l~----~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L  133 (251)
T 3m19_A           59 TKLTWLNLDYNQLQTLSAGVFDDLT-ELGTLGLANNQLA----SLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKL  133 (251)
T ss_dssp             TTCCEEECTTSCCCCCCTTTTTTCT-TCCEEECTTSCCC----CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTC
T ss_pred             ccCCEEECCCCcCCccCHhHhccCC-cCCEEECCCCccc----ccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcc
Confidence            566777776665443  1 235566 7788877776653    44556778888888888888888877654 5778888


Q ss_pred             cEEEccCCCccccchhHHhcCccccEeeccCCCCCcCCC
Q 037304          217 RYLHLNIPSLKSLPSSLLNSLLNLYTLDKPFSYIDHTVD  255 (257)
Q Consensus       217 ~~L~l~~~~l~~lP~~i~~~L~~L~~L~l~~~~l~~lP~  255 (257)
                      ++|++++|.++.+|...|+.+++|++|++++|.+..+|.
T Consensus       134 ~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~  172 (251)
T 3m19_A          134 KELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVPH  172 (251)
T ss_dssp             CEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCT
T ss_pred             cEEECcCCcCCccCHHHcCcCcCCCEEECCCCcCCccCH
Confidence            888888888888887433888888888888888877765

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=99.09  E-value=2.1e-10  Score=105.31  Aligned_cols=107  Identities=16%  Similarity=0.046  Sum_probs=92.3

Q ss_pred             cEEEEEEeCCCCc-cccccCCCCCccEEEeecCCCCCCCcccchHhhccCcccceEEEeCCCCccCchhcCCCCCCcEEE
Q 037304          142 NVKRFTAHGNLND-FAFLDHFDSFLHSLLHLTSGSHYLNPTYCEKICKMFKFLRVLDLGSLVLIRYPFEIENLFLLRYLH  220 (257)
Q Consensus       142 ~~r~L~~~~~~~~-~~~~~~~~~~Lrsl~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~l~~lp~~i~~L~~L~~L~  220 (257)
                      .++.|.+.++... ++....++ +|+.|.+.++...     .+|..+..+++|+.|+|++|.++.+| .++.+++|++|+
T Consensus       442 ~L~~L~Ls~n~l~~lp~~~~l~-~L~~L~Ls~N~l~-----~lp~~~~~l~~L~~L~Ls~N~l~~lp-~l~~l~~L~~L~  514 (567)
T 1dce_A          442 DVRVLHLAHKDLTVLCHLEQLL-LVTHLDLSHNRLR-----ALPPALAALRCLEVLQASDNALENVD-GVANLPRLQELL  514 (567)
T ss_dssp             TCSEEECTTSCCSSCCCGGGGT-TCCEEECCSSCCC-----CCCGGGGGCTTCCEEECCSSCCCCCG-GGTTCSSCCEEE
T ss_pred             CceEEEecCCCCCCCcCccccc-cCcEeecCccccc-----ccchhhhcCCCCCEEECCCCCCCCCc-ccCCCCCCcEEE
Confidence            4667777776654 35577788 9999999998763     35678999999999999999999998 899999999999


Q ss_pred             ccCCCcccc--chhHHhcCccccEeeccCCCCCcCCCC
Q 037304          221 LNIPSLKSL--PSSLLNSLLNLYTLDKPFSYIDHTVDE  256 (257)
Q Consensus       221 l~~~~l~~l--P~~i~~~L~~L~~L~l~~~~l~~lP~~  256 (257)
                      |++|.++.+  |..+ +.|++|++|++++|.+..+|+.
T Consensus       515 Ls~N~l~~~~~p~~l-~~l~~L~~L~L~~N~l~~~~~~  551 (567)
T 1dce_A          515 LCNNRLQQSAAIQPL-VSCPRLVLLNLQGNSLCQEEGI  551 (567)
T ss_dssp             CCSSCCCSSSTTGGG-GGCTTCCEEECTTSGGGGSSSC
T ss_pred             CCCCCCCCCCCcHHH-hcCCCCCEEEecCCcCCCCccH
Confidence            999999988  8899 9999999999999999888764

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=99.09  E-value=3.3e-10  Score=93.13  Aligned_cols=106  Identities=20%  Similarity=0.186  Sum_probs=68.0

Q ss_pred             CcEEEEEEeCCCCcc-c--cccCCCCCccEEEeecCCCCCCCcccchHhhccCcccceEEEeCCCCccCch-hcCCCCCC
Q 037304          141 ENVKRFTAHGNLNDF-A--FLDHFDSFLHSLLHLTSGSHYLNPTYCEKICKMFKFLRVLDLGSLVLIRYPF-EIENLFLL  216 (257)
Q Consensus       141 ~~~r~L~~~~~~~~~-~--~~~~~~~~Lrsl~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~l~~lp~-~i~~L~~L  216 (257)
                      ..++.|.+..+.... +  ....++ +|+.|.+.++...    .+.+..|..+++|+.|+|++|.+..+|. .++.+++|
T Consensus        83 ~~L~~L~L~~n~l~~~~~~~~~~l~-~L~~L~L~~N~l~----~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L  157 (251)
T 3m19_A           83 TELGTLGLANNQLASLPLGVFDHLT-QLDKLYLGGNQLK----SLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNL  157 (251)
T ss_dssp             TTCCEEECTTSCCCCCCTTTTTTCT-TCCEEECCSSCCC----CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTC
T ss_pred             CcCCEEECCCCcccccChhHhcccC-CCCEEEcCCCcCC----CcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCC
Confidence            566666666655443 1  224556 7777777666543    3444556677777777777777776654 56677777


Q ss_pred             cEEEccCCCccccchhHHhcCccccEeeccCCCCC
Q 037304          217 RYLHLNIPSLKSLPSSLLNSLLNLYTLDKPFSYID  251 (257)
Q Consensus       217 ~~L~l~~~~l~~lP~~i~~~L~~L~~L~l~~~~l~  251 (257)
                      ++|++++|.++.+|...|.++++|++|++++|.+.
T Consensus       158 ~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~  192 (251)
T 3m19_A          158 QTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQFD  192 (251)
T ss_dssp             CEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBC
T ss_pred             CEEECCCCcCCccCHHHHhCCCCCCEEEeeCCcee
Confidence            77777777777666643367777777777777654

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=99.08  E-value=3.7e-10  Score=91.22  Aligned_cols=106  Identities=13%  Similarity=-0.006  Sum_probs=58.8

Q ss_pred             cEEEEEEeCCCCccc----cccCCCCCccEEEeecCCCCCCCcccchHhhccCcccceEEEeCCCCccCc-hhcCCCCCC
Q 037304          142 NVKRFTAHGNLNDFA----FLDHFDSFLHSLLHLTSGSHYLNPTYCEKICKMFKFLRVLDLGSLVLIRYP-FEIENLFLL  216 (257)
Q Consensus       142 ~~r~L~~~~~~~~~~----~~~~~~~~Lrsl~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~l~~lp-~~i~~L~~L  216 (257)
                      .++.|.+..+.....    ....++ +|+.|.+.++...    .+.+..|.++++|+.|+|++|.+..+| ..++.+++|
T Consensus        33 ~~~~L~L~~N~l~~~~~~~~~~~l~-~L~~L~L~~N~i~----~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L  107 (220)
T 2v70_A           33 YTAELRLNNNEFTVLEATGIFKKLP-QLRKINFSNNKIT----DIEEGAFEGASGVNEILLTSNRLENVQHKMFKGLESL  107 (220)
T ss_dssp             TCSEEECCSSCCCEECCCCCGGGCT-TCCEEECCSSCCC----EECTTTTTTCTTCCEEECCSSCCCCCCGGGGTTCSSC
T ss_pred             CCCEEEcCCCcCCccCchhhhccCC-CCCEEECCCCcCC----EECHHHhCCCCCCCEEECCCCccCccCHhHhcCCcCC
Confidence            345555555544321    133455 6666666655532    334445666666666666666666554 335566666


Q ss_pred             cEEEccCCCcccc-chhHHhcCccccEeeccCCCCCcC
Q 037304          217 RYLHLNIPSLKSL-PSSLLNSLLNLYTLDKPFSYIDHT  253 (257)
Q Consensus       217 ~~L~l~~~~l~~l-P~~i~~~L~~L~~L~l~~~~l~~l  253 (257)
                      ++|++++|.++.+ |..+ +.+++|++|++++|.+..+
T Consensus       108 ~~L~Ls~N~l~~~~~~~~-~~l~~L~~L~L~~N~l~~~  144 (220)
T 2v70_A          108 KTLMLRSNRITCVGNDSF-IGLSSVRLLSLYDNQITTV  144 (220)
T ss_dssp             CEEECTTSCCCCBCTTSS-TTCTTCSEEECTTSCCCCB
T ss_pred             CEEECCCCcCCeECHhHc-CCCccCCEEECCCCcCCEE
Confidence            6666666666655 3334 6666666666666665554

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=99.08  E-value=5e-10  Score=88.62  Aligned_cols=104  Identities=20%  Similarity=0.157  Sum_probs=63.3

Q ss_pred             CcEEEEEEeCCCCcc--ccccCCCCCccEEEeecCCCCCCCcccchHhhccCcccceEEEeCCCCccCc-hhcCCCCCCc
Q 037304          141 ENVKRFTAHGNLNDF--AFLDHFDSFLHSLLHLTSGSHYLNPTYCEKICKMFKFLRVLDLGSLVLIRYP-FEIENLFLLR  217 (257)
Q Consensus       141 ~~~r~L~~~~~~~~~--~~~~~~~~~Lrsl~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~l~~lp-~~i~~L~~L~  217 (257)
                      ..++.|.+..+....  .....+. +|+.|.+.++...    .+.+..|.++++|+.|+|++|.+..+| ..++.+++|+
T Consensus        31 ~~l~~L~L~~n~i~~ip~~~~~l~-~L~~L~Ls~N~i~----~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~  105 (193)
T 2wfh_A           31 RDVTELYLDGNQFTLVPKELSNYK-HLTLIDLSNNRIS----TLSNQSFSNMTQLLTLILSYNRLRCIPPRTFDGLKSLR  105 (193)
T ss_dssp             TTCCEEECCSSCCCSCCGGGGGCT-TCCEEECCSSCCC----CCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCC
T ss_pred             CCCCEEECCCCcCchhHHHhhccc-CCCEEECCCCcCC----EeCHhHccCCCCCCEEECCCCccCEeCHHHhCCCCCCC
Confidence            455666666555432  2334455 6666666666543    344455666667777777777666554 3566666777


Q ss_pred             EEEccCCCccccchhHHhcCccccEeeccCCC
Q 037304          218 YLHLNIPSLKSLPSSLLNSLLNLYTLDKPFSY  249 (257)
Q Consensus       218 ~L~l~~~~l~~lP~~i~~~L~~L~~L~l~~~~  249 (257)
                      +|+|++|.++.+|...|..+++|++|++++|.
T Consensus       106 ~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~  137 (193)
T 2wfh_A          106 LLSLHGNDISVVPEGAFNDLSALSHLAIGANP  137 (193)
T ss_dssp             EEECCSSCCCBCCTTTTTTCTTCCEEECCSSC
T ss_pred             EEECCCCCCCeeChhhhhcCccccEEEeCCCC
Confidence            77777766666666533666677777776664

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=99.08  E-value=2.4e-10  Score=88.11  Aligned_cols=107  Identities=21%  Similarity=0.140  Sum_probs=89.8

Q ss_pred             CcEEEEEEeCCCCc---cccc-cCCCCCccEEEeecCCCCCCCcccchHhhccCcccceEEEeCCCCcc-CchhcCCCCC
Q 037304          141 ENVKRFTAHGNLND---FAFL-DHFDSFLHSLLHLTSGSHYLNPTYCEKICKMFKFLRVLDLGSLVLIR-YPFEIENLFL  215 (257)
Q Consensus       141 ~~~r~L~~~~~~~~---~~~~-~~~~~~Lrsl~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~l~~-lp~~i~~L~~  215 (257)
                      ..++.|.+..+...   ++.. ..++ +|+.|.+.++....    .  ..+..+++|++|++++|.+.. +|..++.+++
T Consensus        24 ~~L~~L~l~~n~l~~~~i~~~~~~l~-~L~~L~l~~n~l~~----~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~   96 (168)
T 2ell_A           24 AAVRELVLDNCKSNDGKIEGLTAEFV-NLEFLSLINVGLIS----V--SNLPKLPKLKKLELSENRIFGGLDMLAEKLPN   96 (168)
T ss_dssp             TSCSEEECCSCBCBTTBCSSCCGGGG-GCCEEEEESSCCCC----C--SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTT
T ss_pred             ccCCEEECCCCCCChhhHHHHHHhCC-CCCEEeCcCCCCCC----h--hhhccCCCCCEEECcCCcCchHHHHHHhhCCC
Confidence            56788888877654   3333 5678 99999999987642    2  678899999999999999987 7888888999


Q ss_pred             CcEEEccCCCccccc--hhHHhcCccccEeeccCCCCCcCCC
Q 037304          216 LRYLHLNIPSLKSLP--SSLLNSLLNLYTLDKPFSYIDHTVD  255 (257)
Q Consensus       216 L~~L~l~~~~l~~lP--~~i~~~L~~L~~L~l~~~~l~~lP~  255 (257)
                      |++|++++|.++.+|  ..+ +.+++|++|++++|.+..+|.
T Consensus        97 L~~L~Ls~N~l~~~~~~~~l-~~l~~L~~L~l~~N~l~~~~~  137 (168)
T 2ell_A           97 LTHLNLSGNKLKDISTLEPL-KKLECLKSLDLFNCEVTNLND  137 (168)
T ss_dssp             CCEEECBSSSCCSSGGGGGG-SSCSCCCEEECCSSGGGTSTT
T ss_pred             CCEEeccCCccCcchhHHHH-hcCCCCCEEEeeCCcCcchHH
Confidence            999999999999987  677 999999999999999887775

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=99.08  E-value=1.4e-10  Score=87.63  Aligned_cols=107  Identities=21%  Similarity=0.175  Sum_probs=83.0

Q ss_pred             CcEEEEEEeCCCCc---ccc-ccCCCCCccEEEeecCCCCCCCcccchHhhccCcccceEEEeCCCCcc-CchhcCCCCC
Q 037304          141 ENVKRFTAHGNLND---FAF-LDHFDSFLHSLLHLTSGSHYLNPTYCEKICKMFKFLRVLDLGSLVLIR-YPFEIENLFL  215 (257)
Q Consensus       141 ~~~r~L~~~~~~~~---~~~-~~~~~~~Lrsl~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~l~~-lp~~i~~L~~  215 (257)
                      ..++++.+..+...   .+. ...++ +|+.|.+.++....    .  ..+..+++|++|++++|.+.. +|..++.+++
T Consensus        17 ~~l~~L~l~~n~l~~~~~~~~~~~l~-~L~~L~l~~n~l~~----~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~   89 (149)
T 2je0_A           17 SDVKELVLDNSRSNEGKLEGLTDEFE-ELEFLSTINVGLTS----I--ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPN   89 (149)
T ss_dssp             GGCSEEECTTCBCBTTBCCSCCTTCT-TCCEEECTTSCCCC----C--TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTT
T ss_pred             ccCeEEEccCCcCChhHHHHHHhhcC-CCcEEECcCCCCCC----c--hhhhcCCCCCEEECCCCcccchHHHHhhhCCC
Confidence            45677777776654   232 35667 89999888876542    2  667888899999999999886 7777778899


Q ss_pred             CcEEEccCCCccccc--hhHHhcCccccEeeccCCCCCcCCC
Q 037304          216 LRYLHLNIPSLKSLP--SSLLNSLLNLYTLDKPFSYIDHTVD  255 (257)
Q Consensus       216 L~~L~l~~~~l~~lP--~~i~~~L~~L~~L~l~~~~l~~lP~  255 (257)
                      |++|++++|.++.+|  ..+ +.+++|++|++++|.+..+|.
T Consensus        90 L~~L~ls~N~i~~~~~~~~~-~~l~~L~~L~l~~N~l~~~~~  130 (149)
T 2je0_A           90 LTHLNLSGNKIKDLSTIEPL-KKLENLKSLDLFNCEVTNLND  130 (149)
T ss_dssp             CCEEECTTSCCCSHHHHGGG-GGCTTCCEEECTTCGGGGSTT
T ss_pred             CCEEECCCCcCCChHHHHHH-hhCCCCCEEeCcCCcccchHH
Confidence            999999999888775  677 889999999999988877764

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=99.08  E-value=3e-10  Score=95.59  Aligned_cols=110  Identities=18%  Similarity=0.099  Sum_probs=87.5

Q ss_pred             CcEEEEEEeCCCCcc-ccccCCCCCccEEEeecCCCCCCCcccchHhhccCcccceEEEeCCCCccCc-hhcCCCCCCcE
Q 037304          141 ENVKRFTAHGNLNDF-AFLDHFDSFLHSLLHLTSGSHYLNPTYCEKICKMFKFLRVLDLGSLVLIRYP-FEIENLFLLRY  218 (257)
Q Consensus       141 ~~~r~L~~~~~~~~~-~~~~~~~~~Lrsl~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~l~~lp-~~i~~L~~L~~  218 (257)
                      ..++.|.+..+.... +....++ +|++|.+.++...     .++..+..+++|++|++++|.++.+| ..++.+++|++
T Consensus        55 ~~L~~L~L~~n~l~~~~~~~~l~-~L~~L~Ls~N~l~-----~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~  128 (290)
T 1p9a_G           55 TRLTQLNLDRAELTKLQVDGTLP-VLGTLDLSHNQLQ-----SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQE  128 (290)
T ss_dssp             TTCCEEECTTSCCCEEECCSCCT-TCCEEECCSSCCS-----SCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCE
T ss_pred             CCCCEEECCCCccCcccCCCCCC-cCCEEECCCCcCC-----cCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCE
Confidence            566777776665543 3335667 8888888887664     24556788899999999999999886 66889999999


Q ss_pred             EEccCCCccccchhHHhcCccccEeeccCCCCCcCCCC
Q 037304          219 LHLNIPSLKSLPSSLLNSLLNLYTLDKPFSYIDHTVDE  256 (257)
Q Consensus       219 L~l~~~~l~~lP~~i~~~L~~L~~L~l~~~~l~~lP~~  256 (257)
                      |++++|.++.+|..+|..+++|+.|++++|++..+|.+
T Consensus       129 L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~  166 (290)
T 1p9a_G          129 LYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAG  166 (290)
T ss_dssp             EECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSCCCTT
T ss_pred             EECCCCCCCccChhhcccccCCCEEECCCCcCCccCHH
Confidence            99999999999887668899999999999998888864

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=99.08  E-value=3.1e-10  Score=91.63  Aligned_cols=88  Identities=20%  Similarity=0.146  Sum_probs=78.9

Q ss_pred             CccEEEeecCCCCCCCcccchHhhccCcccceEEEeCCCCccC-chhcCCCCCCcEEEccCCCccccchhHHhcCccccE
Q 037304          164 FLHSLLHLTSGSHYLNPTYCEKICKMFKFLRVLDLGSLVLIRY-PFEIENLFLLRYLHLNIPSLKSLPSSLLNSLLNLYT  242 (257)
Q Consensus       164 ~Lrsl~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~l~~l-p~~i~~L~~L~~L~l~~~~l~~lP~~i~~~L~~L~~  242 (257)
                      .++.|.+.++...    .+.+..|..+++|+.|+|++|.+..+ |..+..+++|++|+|++|.++.+|..+|..+++|++
T Consensus        33 ~l~~L~l~~n~i~----~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~  108 (220)
T 2v9t_B           33 TITEIRLEQNTIK----VIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKITELPKSLFEGLFSLQL  108 (220)
T ss_dssp             TCCEEECCSSCCC----EECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCE
T ss_pred             CCCEEECCCCcCC----CcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCcCCccCHhHccCCCCCCE
Confidence            8999999988754    45666899999999999999999976 789999999999999999999999987689999999


Q ss_pred             eeccCCCCCcCCC
Q 037304          243 LDKPFSYIDHTVD  255 (257)
Q Consensus       243 L~l~~~~l~~lP~  255 (257)
                      |++++|.+..+|+
T Consensus       109 L~L~~N~l~~~~~  121 (220)
T 2v9t_B          109 LLLNANKINCLRV  121 (220)
T ss_dssp             EECCSSCCCCCCT
T ss_pred             EECCCCCCCEeCH
Confidence            9999999887754

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=99.07  E-value=3.6e-10  Score=87.58  Aligned_cols=86  Identities=22%  Similarity=0.163  Sum_probs=75.2

Q ss_pred             CCCccEEEeecCCCCCCCcccchHhhccCcccceEEEeCCCCccCchh-cCCCCCCcEEEccCCCccccchhHHhcCccc
Q 037304          162 DSFLHSLLHLTSGSHYLNPTYCEKICKMFKFLRVLDLGSLVLIRYPFE-IENLFLLRYLHLNIPSLKSLPSSLLNSLLNL  240 (257)
Q Consensus       162 ~~~Lrsl~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~l~~lp~~-i~~L~~L~~L~l~~~~l~~lP~~i~~~L~~L  240 (257)
                      . .++.|.+.++...    .+.+..|.++++|++|+|++|.+..+|.. +..+++|++|+|++|.++.+|...|+++++|
T Consensus        30 ~-~l~~L~L~~N~i~----~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L  104 (170)
T 3g39_A           30 T-TTQVLYLYDNQIT----KLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQLKSIPRGAFDNLKSL  104 (170)
T ss_dssp             T-TCSEEECCSSCCC----CCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTC
T ss_pred             C-CCcEEEcCCCcCC----ccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCCCccCEeCHHHhcCCCCC
Confidence            5 8999999988764    45678899999999999999999988765 5899999999999999999998744999999


Q ss_pred             cEeeccCCCCCc
Q 037304          241 YTLDKPFSYIDH  252 (257)
Q Consensus       241 ~~L~l~~~~l~~  252 (257)
                      ++|++++|.+.-
T Consensus       105 ~~L~L~~N~~~c  116 (170)
T 3g39_A          105 THIWLLNNPWDC  116 (170)
T ss_dssp             CEEECCSSCBCT
T ss_pred             CEEEeCCCCCCC
Confidence            999999997653

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=99.06  E-value=4.8e-10  Score=95.99  Aligned_cols=103  Identities=18%  Similarity=0.093  Sum_probs=51.6

Q ss_pred             CcEEEEEEeCCCCcc-c-cccCCCCCccEEEeecCCCCCCCcccchHh---------hccCcccceEEEeCCCCccCchh
Q 037304          141 ENVKRFTAHGNLNDF-A-FLDHFDSFLHSLLHLTSGSHYLNPTYCEKI---------CKMFKFLRVLDLGSLVLIRYPFE  209 (257)
Q Consensus       141 ~~~r~L~~~~~~~~~-~-~~~~~~~~Lrsl~l~~~~~~~~~~~~~~~~---------~~~l~~Lr~L~L~~~~l~~lp~~  209 (257)
                      ..++.|.+..+.... + ....++ +|+.|.+.++....    ..|..         |.++++|++|++++|.+..+|..
T Consensus       127 ~~L~~L~Ls~n~l~~lp~~l~~l~-~L~~L~L~~n~~~~----~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~lp~~  201 (328)
T 4fcg_A          127 AGLETLTLARNPLRALPASIASLN-RLRELSIRACPELT----ELPEPLASTDASGEHQGLVNLQSLRLEWTGIRSLPAS  201 (328)
T ss_dssp             TTCSEEEEESCCCCCCCGGGGGCT-TCCEEEEEEETTCC----CCCSCSEEEC-CCCEEESTTCCEEEEEEECCCCCCGG
T ss_pred             CCCCEEECCCCccccCcHHHhcCc-CCCEEECCCCCCcc----ccChhHhhccchhhhccCCCCCEEECcCCCcCcchHh
Confidence            455666666554432 2 334455 66666665533210    11111         22355555555555555555555


Q ss_pred             cCCCCCCcEEEccCCCccccchhHHhcCccccEeeccCCC
Q 037304          210 IENLFLLRYLHLNIPSLKSLPSSLLNSLLNLYTLDKPFSY  249 (257)
Q Consensus       210 i~~L~~L~~L~l~~~~l~~lP~~i~~~L~~L~~L~l~~~~  249 (257)
                      ++.+++|++|++++|.+..+|..+ +++++|++|++++|.
T Consensus       202 l~~l~~L~~L~L~~N~l~~l~~~l-~~l~~L~~L~Ls~n~  240 (328)
T 4fcg_A          202 IANLQNLKSLKIRNSPLSALGPAI-HHLPKLEELDLRGCT  240 (328)
T ss_dssp             GGGCTTCCEEEEESSCCCCCCGGG-GGCTTCCEEECTTCT
T ss_pred             hcCCCCCCEEEccCCCCCcCchhh-ccCCCCCEEECcCCc
Confidence            555555555555555555555555 555555555555544

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=99.05  E-value=3.8e-10  Score=96.66  Aligned_cols=109  Identities=20%  Similarity=0.178  Sum_probs=92.0

Q ss_pred             CcEEEEEEeCCCCcc-c-cccCCCCCccEEEeecCCCCCCCcccchHhhccCcccceEEEeCCC-CccCchhcCC-----
Q 037304          141 ENVKRFTAHGNLNDF-A-FLDHFDSFLHSLLHLTSGSHYLNPTYCEKICKMFKFLRVLDLGSLV-LIRYPFEIEN-----  212 (257)
Q Consensus       141 ~~~r~L~~~~~~~~~-~-~~~~~~~~Lrsl~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~-l~~lp~~i~~-----  212 (257)
                      ..+++|.+..+.... + ....++ +|+.|.+.++...     .+|..+.++++|++|++++|. +..+|..++.     
T Consensus       104 ~~L~~L~L~~n~l~~lp~~~~~l~-~L~~L~Ls~n~l~-----~lp~~l~~l~~L~~L~L~~n~~~~~~p~~~~~~~~~~  177 (328)
T 4fcg_A          104 SHLQHMTIDAAGLMELPDTMQQFA-GLETLTLARNPLR-----ALPASIASLNRLRELSIRACPELTELPEPLASTDASG  177 (328)
T ss_dssp             TTCSEEEEESSCCCCCCSCGGGGT-TCSEEEEESCCCC-----CCCGGGGGCTTCCEEEEEEETTCCCCCSCSEEEC-CC
T ss_pred             CCCCEEECCCCCccchhHHHhccC-CCCEEECCCCccc-----cCcHHHhcCcCCCEEECCCCCCccccChhHhhccchh
Confidence            678889998877553 3 356778 9999999988763     356779999999999999977 5578887765     


Q ss_pred             ----CCCCcEEEccCCCccccchhHHhcCccccEeeccCCCCCcCCCC
Q 037304          213 ----LFLLRYLHLNIPSLKSLPSSLLNSLLNLYTLDKPFSYIDHTVDE  256 (257)
Q Consensus       213 ----L~~L~~L~l~~~~l~~lP~~i~~~L~~L~~L~l~~~~l~~lP~~  256 (257)
                          +++|++|++++|.++.+|.++ +++++|++|++++|.+..+|+.
T Consensus       178 ~~~~l~~L~~L~L~~n~l~~lp~~l-~~l~~L~~L~L~~N~l~~l~~~  224 (328)
T 4fcg_A          178 EHQGLVNLQSLRLEWTGIRSLPASI-ANLQNLKSLKIRNSPLSALGPA  224 (328)
T ss_dssp             CEEESTTCCEEEEEEECCCCCCGGG-GGCTTCCEEEEESSCCCCCCGG
T ss_pred             hhccCCCCCEEECcCCCcCcchHhh-cCCCCCCEEEccCCCCCcCchh
Confidence                999999999999999999999 9999999999999998888764

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=99.05  E-value=1.2e-10  Score=110.09  Aligned_cols=106  Identities=23%  Similarity=0.180  Sum_probs=85.4

Q ss_pred             CcEEEEEEeCCCCcc--ccccCCCCCccEEEeecCCCCCCCcccchHhhccCcccceEEEeCCCCccCchhcCCCCCCcE
Q 037304          141 ENVKRFTAHGNLNDF--AFLDHFDSFLHSLLHLTSGSHYLNPTYCEKICKMFKFLRVLDLGSLVLIRYPFEIENLFLLRY  218 (257)
Q Consensus       141 ~~~r~L~~~~~~~~~--~~~~~~~~~Lrsl~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~l~~lp~~i~~L~~L~~  218 (257)
                      ..++.|.+..+....  .....++ +|++|.+.++...     .+|..|..+++|++|+|++|.+..+|..++.|++|++
T Consensus       224 ~~L~~L~Ls~n~l~~l~~~~~~l~-~L~~L~Ls~N~l~-----~lp~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~  297 (727)
T 4b8c_D          224 QLWHALDLSNLQIFNISANIFKYD-FLTRLYLNGNSLT-----ELPAEIKNLSNLRVLDLSHNRLTSLPAELGSCFQLKY  297 (727)
T ss_dssp             CCCCEEECTTSCCSCCCGGGGGCC-SCSCCBCTTSCCS-----CCCGGGGGGTTCCEEECTTSCCSSCCSSGGGGTTCSE
T ss_pred             CCCcEEECCCCCCCCCChhhcCCC-CCCEEEeeCCcCc-----ccChhhhCCCCCCEEeCcCCcCCccChhhcCCCCCCE
Confidence            566777777766542  2445677 8888888887653     3556788899999999999998888999999999999


Q ss_pred             EEccCCCccccchhHHhcCccccEeeccCCCCCcC
Q 037304          219 LHLNIPSLKSLPSSLLNSLLNLYTLDKPFSYIDHT  253 (257)
Q Consensus       219 L~l~~~~l~~lP~~i~~~L~~L~~L~l~~~~l~~l  253 (257)
                      |+|++|.++.+|.++ ++|.+|++|+|++|.+...
T Consensus       298 L~L~~N~l~~lp~~~-~~l~~L~~L~L~~N~l~~~  331 (727)
T 4b8c_D          298 FYFFDNMVTTLPWEF-GNLCNLQFLGVEGNPLEKQ  331 (727)
T ss_dssp             EECCSSCCCCCCSST-TSCTTCCCEECTTSCCCSH
T ss_pred             EECCCCCCCccChhh-hcCCCccEEeCCCCccCCC
Confidence            999999999999988 9999999999999887643

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=99.04  E-value=8.5e-10  Score=91.66  Aligned_cols=110  Identities=20%  Similarity=0.199  Sum_probs=65.2

Q ss_pred             CcEEEEEEeCCCCcc-c--cccCCCCCccEEEeecCCCCCCCcccchHhhccCcccceEEEeCCCCccCchh-cCCCCCC
Q 037304          141 ENVKRFTAHGNLNDF-A--FLDHFDSFLHSLLHLTSGSHYLNPTYCEKICKMFKFLRVLDLGSLVLIRYPFE-IENLFLL  216 (257)
Q Consensus       141 ~~~r~L~~~~~~~~~-~--~~~~~~~~Lrsl~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~l~~lp~~-i~~L~~L  216 (257)
                      ..++.|.+..+.... +  ....++ +|+.|.+.++...    ...+..|..+++|+.|++++|.+..+|.. ++.+++|
T Consensus        85 ~~L~~L~l~~n~l~~~~~~~~~~l~-~L~~L~l~~n~l~----~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L  159 (270)
T 2o6q_A           85 KNLETLWVTDNKLQALPIGVFDQLV-NLAELRLDRNQLK----SLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSL  159 (270)
T ss_dssp             TTCCEEECCSSCCCCCCTTTTTTCS-SCCEEECCSSCCC----CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTC
T ss_pred             CCCCEEECCCCcCCcCCHhHccccc-CCCEEECCCCccC----eeCHHHhCcCcCCCEEECCCCcCCccCHhHccCCccc
Confidence            445555555444332 1  123445 6666666555432    23445566667777777777776666543 5667777


Q ss_pred             cEEEccCCCccccchhHHhcCccccEeeccCCCCCcCCC
Q 037304          217 RYLHLNIPSLKSLPSSLLNSLLNLYTLDKPFSYIDHTVD  255 (257)
Q Consensus       217 ~~L~l~~~~l~~lP~~i~~~L~~L~~L~l~~~~l~~lP~  255 (257)
                      ++|++++|.++.+|...|.++++|++|++++|.+..+|.
T Consensus       160 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~  198 (270)
T 2o6q_A          160 KELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPE  198 (270)
T ss_dssp             CEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCCSCCCT
T ss_pred             ceeEecCCcCcEeChhHhccCCCcCEEECCCCcCCcCCH
Confidence            777777777766665533667777777777776666654

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=99.04  E-value=9.7e-10  Score=87.01  Aligned_cols=107  Identities=15%  Similarity=0.105  Sum_probs=63.0

Q ss_pred             CcEEEEEEeCCCCcc-ccccCCCCCccEEEeecCCCCCCCcccchHhhccCcccceEEEeCCCCcc-CchhcCCCCCCcE
Q 037304          141 ENVKRFTAHGNLNDF-AFLDHFDSFLHSLLHLTSGSHYLNPTYCEKICKMFKFLRVLDLGSLVLIR-YPFEIENLFLLRY  218 (257)
Q Consensus       141 ~~~r~L~~~~~~~~~-~~~~~~~~~Lrsl~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~l~~-lp~~i~~L~~L~~  218 (257)
                      ..++.|.+..+.... +....++ +|+.|.+.++...    ...+..+..+++|++|++++|.+.. .|..++.+++|++
T Consensus        66 ~~L~~L~l~~n~~~~~~~l~~l~-~L~~L~l~~n~l~----~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~  140 (197)
T 4ezg_A           66 HNIKDLTINNIHATNYNPISGLS-NLERLRIMGKDVT----SDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNS  140 (197)
T ss_dssp             TTCSEEEEESCCCSCCGGGTTCT-TCCEEEEECTTCB----GGGSCCCTTCTTCCEEECCSSBCBGGGHHHHTTCSSCCE
T ss_pred             CCCCEEEccCCCCCcchhhhcCC-CCCEEEeECCccC----cccChhhcCCCCCCEEEecCCccCcHhHHHHhhCCCCCE
Confidence            455666666554332 3444555 6666666665442    2233445666666666666666653 4566666666666


Q ss_pred             EEccCCC-ccccchhHHhcCccccEeeccCCCCCcCC
Q 037304          219 LHLNIPS-LKSLPSSLLNSLLNLYTLDKPFSYIDHTV  254 (257)
Q Consensus       219 L~l~~~~-l~~lP~~i~~~L~~L~~L~l~~~~l~~lP  254 (257)
                      |++++|. +..+| .+ +.+++|++|++++|.+..+|
T Consensus       141 L~L~~n~~i~~~~-~l-~~l~~L~~L~l~~n~i~~~~  175 (197)
T 4ezg_A          141 IDLSYNGAITDIM-PL-KTLPELKSLNIQFDGVHDYR  175 (197)
T ss_dssp             EECCSCTBCCCCG-GG-GGCSSCCEEECTTBCCCCCT
T ss_pred             EEccCCCCccccH-hh-cCCCCCCEEECCCCCCcChH
Confidence            6666665 66665 45 66666666666666655543

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=99.04  E-value=6.5e-10  Score=87.94  Aligned_cols=88  Identities=18%  Similarity=0.145  Sum_probs=77.7

Q ss_pred             CccEEEeecCCCCCCCcccchHhhccCcccceEEEeCCCCccCc-hhcCCCCCCcEEEccCCCccccchhHHhcCccccE
Q 037304          164 FLHSLLHLTSGSHYLNPTYCEKICKMFKFLRVLDLGSLVLIRYP-FEIENLFLLRYLHLNIPSLKSLPSSLLNSLLNLYT  242 (257)
Q Consensus       164 ~Lrsl~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~l~~lp-~~i~~L~~L~~L~l~~~~l~~lP~~i~~~L~~L~~  242 (257)
                      +++.|.+.++...     .++..|..+++|+.|+|++|.++.++ ..+..+++|++|+|++|.++.+|...|+.+++|++
T Consensus        32 ~l~~L~L~~n~i~-----~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~  106 (193)
T 2wfh_A           32 DVTELYLDGNQFT-----LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIPPRTFDGLKSLRL  106 (193)
T ss_dssp             TCCEEECCSSCCC-----SCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCE
T ss_pred             CCCEEECCCCcCc-----hhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCccCEeCHHHhCCCCCCCE
Confidence            8999999988764     34478999999999999999999886 57999999999999999999998754499999999


Q ss_pred             eeccCCCCCcCCCC
Q 037304          243 LDKPFSYIDHTVDE  256 (257)
Q Consensus       243 L~l~~~~l~~lP~~  256 (257)
                      |+|++|.+..+|.+
T Consensus       107 L~L~~N~l~~~~~~  120 (193)
T 2wfh_A          107 LSLHGNDISVVPEG  120 (193)
T ss_dssp             EECCSSCCCBCCTT
T ss_pred             EECCCCCCCeeChh
Confidence            99999999988864

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=99.03  E-value=2.7e-10  Score=107.64  Aligned_cols=93  Identities=27%  Similarity=0.184  Sum_probs=80.8

Q ss_pred             ccCCCCCccEEEeecCCCCCCCcccchHhhccCcccceEEEeCCCCccCchhcCCCCCCcEEEccCCCccccchhHHhcC
Q 037304          158 LDHFDSFLHSLLHLTSGSHYLNPTYCEKICKMFKFLRVLDLGSLVLIRYPFEIENLFLLRYLHLNIPSLKSLPSSLLNSL  237 (257)
Q Consensus       158 ~~~~~~~Lrsl~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~l~~lp~~i~~L~~L~~L~l~~~~l~~lP~~i~~~L  237 (257)
                      ...+. .|+.|.+.++...     .++..+..+++|+.|+|++|.+..+|..++.|++|++|+|++|.++.+|.++ ++|
T Consensus       220 ~~~l~-~L~~L~Ls~n~l~-----~l~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l~~lp~~~-~~l  292 (727)
T 4b8c_D          220 KYDDQ-LWHALDLSNLQIF-----NISANIFKYDFLTRLYLNGNSLTELPAEIKNLSNLRVLDLSHNRLTSLPAEL-GSC  292 (727)
T ss_dssp             --CCC-CCCEEECTTSCCS-----CCCGGGGGCCSCSCCBCTTSCCSCCCGGGGGGTTCCEEECTTSCCSSCCSSG-GGG
T ss_pred             hccCC-CCcEEECCCCCCC-----CCChhhcCCCCCCEEEeeCCcCcccChhhhCCCCCCEEeCcCCcCCccChhh-cCC
Confidence            44567 8999999888763     2344455899999999999999999999999999999999999999999999 999


Q ss_pred             ccccEeeccCCCCCcCCCCC
Q 037304          238 LNLYTLDKPFSYIDHTVDEF  257 (257)
Q Consensus       238 ~~L~~L~l~~~~l~~lP~~i  257 (257)
                      .+|++|+|++|.+..+|.+|
T Consensus       293 ~~L~~L~L~~N~l~~lp~~~  312 (727)
T 4b8c_D          293 FQLKYFYFFDNMVTTLPWEF  312 (727)
T ss_dssp             TTCSEEECCSSCCCCCCSST
T ss_pred             CCCCEEECCCCCCCccChhh
Confidence            99999999999999999754

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=99.03  E-value=1e-09  Score=91.23  Aligned_cols=110  Identities=18%  Similarity=0.185  Sum_probs=75.4

Q ss_pred             CcEEEEEEeCCCCcc-cc--ccCCCCCccEEEeecCCCCCCCcccchHhhccCcccceEEEeCCCCccCc-hhcCCCCCC
Q 037304          141 ENVKRFTAHGNLNDF-AF--LDHFDSFLHSLLHLTSGSHYLNPTYCEKICKMFKFLRVLDLGSLVLIRYP-FEIENLFLL  216 (257)
Q Consensus       141 ~~~r~L~~~~~~~~~-~~--~~~~~~~Lrsl~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~l~~lp-~~i~~L~~L  216 (257)
                      ..++.|.+..+.... +.  ...++ +|++|.+.++...    ...+..|..+++|+.|++++|.+..+| ..++.+++|
T Consensus        61 ~~L~~L~l~~n~l~~i~~~~~~~l~-~L~~L~l~~n~l~----~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L  135 (270)
T 2o6q_A           61 TKLRLLYLNDNKLQTLPAGIFKELK-NLETLWVTDNKLQ----ALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKL  135 (270)
T ss_dssp             TTCCEEECCSSCCSCCCTTTTSSCT-TCCEEECCSSCCC----CCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTC
T ss_pred             CCCCEEECCCCccCeeChhhhcCCC-CCCEEECCCCcCC----cCCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCC
Confidence            556666666554332 11  23456 7777777666543    344556777788888888888877665 446778888


Q ss_pred             cEEEccCCCccccchhHHhcCccccEeeccCCCCCcCCC
Q 037304          217 RYLHLNIPSLKSLPSSLLNSLLNLYTLDKPFSYIDHTVD  255 (257)
Q Consensus       217 ~~L~l~~~~l~~lP~~i~~~L~~L~~L~l~~~~l~~lP~  255 (257)
                      ++|++++|.++.+|...|+.+++|++|++++|.+..+|.
T Consensus       136 ~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~  174 (270)
T 2o6q_A          136 TYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRVPE  174 (270)
T ss_dssp             CEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCT
T ss_pred             CEEECCCCcCCccCHhHccCCcccceeEecCCcCcEeCh
Confidence            888888888888877644788888888888887777664

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=99.03  E-value=5.6e-10  Score=94.90  Aligned_cols=104  Identities=18%  Similarity=0.123  Sum_probs=52.9

Q ss_pred             cEEEEEEeCCCCc----c-ccccCCCCCccEEEeec-CCCCCCCcccchHhhccCcccceEEEeCCCCc-cCchhcCCCC
Q 037304          142 NVKRFTAHGNLND----F-AFLDHFDSFLHSLLHLT-SGSHYLNPTYCEKICKMFKFLRVLDLGSLVLI-RYPFEIENLF  214 (257)
Q Consensus       142 ~~r~L~~~~~~~~----~-~~~~~~~~~Lrsl~l~~-~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~l~-~lp~~i~~L~  214 (257)
                      ++++|.+.++...    . .....++ +|+.|.+.+ +...    ...|..|.++++|++|++++|.+. .+|..+++++
T Consensus        51 ~l~~L~L~~~~l~~~~~~~~~l~~l~-~L~~L~L~~~n~l~----~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~  125 (313)
T 1ogq_A           51 RVNNLDLSGLNLPKPYPIPSSLANLP-YLNFLYIGGINNLV----GPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIK  125 (313)
T ss_dssp             CEEEEEEECCCCSSCEECCGGGGGCT-TCSEEEEEEETTEE----SCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCT
T ss_pred             eEEEEECCCCCccCCcccChhHhCCC-CCCeeeCCCCCccc----ccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCC
Confidence            4555555554432    1 2334455 556665553 3221    223444555555555555555554 4455555555


Q ss_pred             CCcEEEccCCCcc-ccchhHHhcCccccEeeccCCCCC
Q 037304          215 LLRYLHLNIPSLK-SLPSSLLNSLLNLYTLDKPFSYID  251 (257)
Q Consensus       215 ~L~~L~l~~~~l~-~lP~~i~~~L~~L~~L~l~~~~l~  251 (257)
                      +|++|++++|.+. .+|..+ +++++|++|++++|.+.
T Consensus       126 ~L~~L~Ls~N~l~~~~p~~~-~~l~~L~~L~L~~N~l~  162 (313)
T 1ogq_A          126 TLVTLDFSYNALSGTLPPSI-SSLPNLVGITFDGNRIS  162 (313)
T ss_dssp             TCCEEECCSSEEESCCCGGG-GGCTTCCEEECCSSCCE
T ss_pred             CCCEEeCCCCccCCcCChHH-hcCCCCCeEECcCCccc
Confidence            5555555555554 455555 55555555555555544

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=99.02  E-value=1.2e-09  Score=87.16  Aligned_cols=91  Identities=23%  Similarity=0.213  Sum_probs=78.8

Q ss_pred             CCCCccEEEeecCCCCCCCcccchHhhccCcccceEEEeCCCCccCchh-cCCCCCCcEEEccCCCccccchhHHhcCcc
Q 037304          161 FDSFLHSLLHLTSGSHYLNPTYCEKICKMFKFLRVLDLGSLVLIRYPFE-IENLFLLRYLHLNIPSLKSLPSSLLNSLLN  239 (257)
Q Consensus       161 ~~~~Lrsl~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~l~~lp~~-i~~L~~L~~L~l~~~~l~~lP~~i~~~L~~  239 (257)
                      .+ +++.|.+.++...    ...+..|..+++|++|++++|.+..+|.. +..+++|++|++++|.++.+|...|+++++
T Consensus        27 ~~-~l~~L~l~~n~l~----~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~  101 (208)
T 2o6s_A           27 PA-QTTYLDLETNSLK----SLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQ  101 (208)
T ss_dssp             CT-TCSEEECCSSCCC----CCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTT
T ss_pred             CC-CCcEEEcCCCccC----cCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCcCCccCHhHhcCccC
Confidence            45 8999999988754    45567789999999999999999988754 688999999999999999998875589999


Q ss_pred             ccEeeccCCCCCcCCCC
Q 037304          240 LYTLDKPFSYIDHTVDE  256 (257)
Q Consensus       240 L~~L~l~~~~l~~lP~~  256 (257)
                      |++|++++|.+..+|..
T Consensus       102 L~~L~L~~N~l~~~~~~  118 (208)
T 2o6s_A          102 LKELALNTNQLQSLPDG  118 (208)
T ss_dssp             CCEEECCSSCCCCCCTT
T ss_pred             CCEEEcCCCcCcccCHh
Confidence            99999999998888763

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=99.02  E-value=4.9e-10  Score=87.10  Aligned_cols=102  Identities=15%  Similarity=0.017  Sum_probs=48.9

Q ss_pred             cEEEEEEeCCCCcc-ccccCCCCCccEEEeecCCCCCCCcccchHhhccCcccceEEEeCCCCccCch--hcCCCCCCcE
Q 037304          142 NVKRFTAHGNLNDF-AFLDHFDSFLHSLLHLTSGSHYLNPTYCEKICKMFKFLRVLDLGSLVLIRYPF--EIENLFLLRY  218 (257)
Q Consensus       142 ~~r~L~~~~~~~~~-~~~~~~~~~Lrsl~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~l~~lp~--~i~~L~~L~~  218 (257)
                      .++.|.+..+.... .....++ +|+.|.+.++...    ..++..|..+++|++|++++|.+..+|.  .++.+++|++
T Consensus        43 ~L~~L~Ls~N~l~~~~~l~~l~-~L~~L~Ls~N~l~----~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~l~~l~~L~~  117 (176)
T 1a9n_A           43 QFDAIDFSDNEIRKLDGFPLLR-RLKTLLVNNNRIC----RIGEGLDQALPDLTELILTNNSLVELGDLDPLASLKSLTY  117 (176)
T ss_dssp             CCSEEECCSSCCCEECCCCCCS-SCCEEECCSSCCC----EECSCHHHHCTTCCEEECCSCCCCCGGGGGGGGGCTTCCE
T ss_pred             CCCEEECCCCCCCcccccccCC-CCCEEECCCCccc----ccCcchhhcCCCCCEEECCCCcCCcchhhHhhhcCCCCCE
Confidence            44444444443322 2333344 5555555544432    2223334555555555555555555544  4555555555


Q ss_pred             EEccCCCccccchh----HHhcCccccEeeccCCC
Q 037304          219 LHLNIPSLKSLPSS----LLNSLLNLYTLDKPFSY  249 (257)
Q Consensus       219 L~l~~~~l~~lP~~----i~~~L~~L~~L~l~~~~  249 (257)
                      |++++|.+..+|..    + +.+++|++||+++|.
T Consensus       118 L~l~~N~i~~~~~~~~~~~-~~l~~L~~Ld~~~n~  151 (176)
T 1a9n_A          118 LCILRNPVTNKKHYRLYVI-YKVPQVRVLDFQKVK  151 (176)
T ss_dssp             EECCSSGGGGSTTHHHHHH-HHCTTCSEETTEECC
T ss_pred             EEecCCCCCCcHhHHHHHH-HHCCccceeCCCcCC
Confidence            55555555555543    3 555555555555543

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=99.02  E-value=5.3e-10  Score=102.95  Aligned_cols=108  Identities=18%  Similarity=0.028  Sum_probs=86.9

Q ss_pred             CcEEEEEEeCCCCcc---ccccCCCCCccEEEeecCCCCCCCcccchHhhccCcccceEEEeCCCCccCc-hhcCCCCCC
Q 037304          141 ENVKRFTAHGNLNDF---AFLDHFDSFLHSLLHLTSGSHYLNPTYCEKICKMFKFLRVLDLGSLVLIRYP-FEIENLFLL  216 (257)
Q Consensus       141 ~~~r~L~~~~~~~~~---~~~~~~~~~Lrsl~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~l~~lp-~~i~~L~~L  216 (257)
                      ..+++|.+..+....   ....+++ +|+.|.+.++...    .+.+..|.++++|++|+|++|.++.+| ..+++|++|
T Consensus        52 ~~~~~LdLs~N~i~~l~~~~f~~l~-~L~~L~Ls~N~i~----~i~~~~f~~L~~L~~L~Ls~N~l~~l~~~~f~~L~~L  126 (635)
T 4g8a_A           52 FSTKNLDLSFNPLRHLGSYSFFSFP-ELQVLDLSRCEIQ----TIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSL  126 (635)
T ss_dssp             TTCCEEECTTSCCCEECTTTTTTCT-TCCEEECTTCCCC----EECTTTTTTCTTCCEEECTTCCCCEECGGGGTTCTTC
T ss_pred             cCCCEEEeeCCCCCCCCHHHHhCCC-CCCEEECCCCcCC----CcChhHhcCCCCCCEEEccCCcCCCCCHHHhcCCCCC
Confidence            578888888877654   2356778 8999999887653    456678899999999999999998887 457889999


Q ss_pred             cEEEccCCCccccchhHHhcCccccEeeccCCCCCcC
Q 037304          217 RYLHLNIPSLKSLPSSLLNSLLNLYTLDKPFSYIDHT  253 (257)
Q Consensus       217 ~~L~l~~~~l~~lP~~i~~~L~~L~~L~l~~~~l~~l  253 (257)
                      ++|++++|.++.+|+..|++|++|++|++++|.+..+
T Consensus       127 ~~L~Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~  163 (635)
T 4g8a_A          127 QKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSF  163 (635)
T ss_dssp             CEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCC
T ss_pred             CEEECCCCcCCCCChhhhhcCcccCeeccccCccccC
Confidence            9999999999888875338999999999999887644

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=99.02  E-value=1e-09  Score=85.31  Aligned_cols=91  Identities=19%  Similarity=0.160  Sum_probs=79.0

Q ss_pred             CCCCccEEEeecCCCCCCCcccchHhhccCcccceEEEeCCCCccCchh-cCCCCCCcEEEccCCCccccchhHHhcCcc
Q 037304          161 FDSFLHSLLHLTSGSHYLNPTYCEKICKMFKFLRVLDLGSLVLIRYPFE-IENLFLLRYLHLNIPSLKSLPSSLLNSLLN  239 (257)
Q Consensus       161 ~~~~Lrsl~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~l~~lp~~-i~~L~~L~~L~l~~~~l~~lP~~i~~~L~~  239 (257)
                      .+ +++.|.+.++...    ...+..|..+++|++|++++|.+..+|.. ++.+++|++|++++|.++.+|...|+++++
T Consensus        27 ~~-~l~~L~l~~n~l~----~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~  101 (177)
T 2o6r_A           27 PS-SATRLELESNKLQ----SLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQSLPNGVFDKLTQ  101 (177)
T ss_dssp             CT-TCSEEECCSSCCC----CCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTT
T ss_pred             CC-CCcEEEeCCCccc----EeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCCCCccccCHHHhhCCcc
Confidence            35 8999999988753    45566789999999999999999988754 689999999999999999998875589999


Q ss_pred             ccEeeccCCCCCcCCCC
Q 037304          240 LYTLDKPFSYIDHTVDE  256 (257)
Q Consensus       240 L~~L~l~~~~l~~lP~~  256 (257)
                      |++|++++|.+..+|.+
T Consensus       102 L~~L~l~~N~l~~~~~~  118 (177)
T 2o6r_A          102 LKELALDTNQLKSVPDG  118 (177)
T ss_dssp             CCEEECCSSCCSCCCTT
T ss_pred             cCEEECcCCcceEeCHH
Confidence            99999999999888864

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=99.01  E-value=2.4e-09  Score=84.74  Aligned_cols=106  Identities=10%  Similarity=0.028  Sum_probs=89.9

Q ss_pred             CcEEEEEEeCCCCcc-ccccCCCCCccEEEeecCCCCCCCcccchHhhccCcccceEEEeCCCCcc-CchhcCCCCCCcE
Q 037304          141 ENVKRFTAHGNLNDF-AFLDHFDSFLHSLLHLTSGSHYLNPTYCEKICKMFKFLRVLDLGSLVLIR-YPFEIENLFLLRY  218 (257)
Q Consensus       141 ~~~r~L~~~~~~~~~-~~~~~~~~~Lrsl~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~l~~-lp~~i~~L~~L~~  218 (257)
                      ..++++.+..+.... +....++ +|++|.+.++...      ....+..+++|+.|++++|.+.. .|..++.+++|++
T Consensus        44 ~~L~~L~l~~n~i~~l~~l~~l~-~L~~L~l~~n~~~------~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~  116 (197)
T 4ezg_A           44 NSLTYITLANINVTDLTGIEYAH-NIKDLTINNIHAT------NYNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTL  116 (197)
T ss_dssp             HTCCEEEEESSCCSCCTTGGGCT-TCSEEEEESCCCS------CCGGGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCE
T ss_pred             CCccEEeccCCCccChHHHhcCC-CCCEEEccCCCCC------cchhhhcCCCCCEEEeECCccCcccChhhcCCCCCCE
Confidence            678889888876553 5667788 9999999988553      22478899999999999999885 6888999999999


Q ss_pred             EEccCCCccc-cchhHHhcCccccEeeccCCC-CCcCC
Q 037304          219 LHLNIPSLKS-LPSSLLNSLLNLYTLDKPFSY-IDHTV  254 (257)
Q Consensus       219 L~l~~~~l~~-lP~~i~~~L~~L~~L~l~~~~-l~~lP  254 (257)
                      |++++|.+.. .|..+ +++++|++|++++|. +..+|
T Consensus       117 L~Ls~n~i~~~~~~~l-~~l~~L~~L~L~~n~~i~~~~  153 (197)
T 4ezg_A          117 LDISHSAHDDSILTKI-NTLPKVNSIDLSYNGAITDIM  153 (197)
T ss_dssp             EECCSSBCBGGGHHHH-TTCSSCCEEECCSCTBCCCCG
T ss_pred             EEecCCccCcHhHHHH-hhCCCCCEEEccCCCCccccH
Confidence            9999999884 77888 999999999999998 77776

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=99.00  E-value=5.8e-10  Score=102.69  Aligned_cols=108  Identities=17%  Similarity=0.099  Sum_probs=75.0

Q ss_pred             CcEEEEEEeCCCCcc-c--cccCCCCCccEEEeecCCCCCCCcccchHhhccCcccceEEEeCCCCccCch-hcCCCCCC
Q 037304          141 ENVKRFTAHGNLNDF-A--FLDHFDSFLHSLLHLTSGSHYLNPTYCEKICKMFKFLRVLDLGSLVLIRYPF-EIENLFLL  216 (257)
Q Consensus       141 ~~~r~L~~~~~~~~~-~--~~~~~~~~Lrsl~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~l~~lp~-~i~~L~~L  216 (257)
                      ..++.|.+..+.... +  ...+++ +|++|.+.++...    ..++..|.++++|++|++++|.++.+|. .++++++|
T Consensus        76 ~~L~~L~Ls~N~i~~i~~~~f~~L~-~L~~L~Ls~N~l~----~l~~~~f~~L~~L~~L~Ls~N~l~~l~~~~~~~L~~L  150 (635)
T 4g8a_A           76 PELQVLDLSRCEIQTIEDGAYQSLS-HLSTLILTGNPIQ----SLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTL  150 (635)
T ss_dssp             TTCCEEECTTCCCCEECTTTTTTCT-TCCEEECTTCCCC----EECGGGGTTCTTCCEEECTTSCCCCSTTCCCTTCTTC
T ss_pred             CCCCEEECCCCcCCCcChhHhcCCC-CCCEEEccCCcCC----CCCHHHhcCCCCCCEEECCCCcCCCCChhhhhcCccc
Confidence            566777777765543 1  245566 7778777776543    4555677778888888888887777754 47777888


Q ss_pred             cEEEccCCCccc--cchhHHhcCccccEeeccCCCCCcCC
Q 037304          217 RYLHLNIPSLKS--LPSSLLNSLLNLYTLDKPFSYIDHTV  254 (257)
Q Consensus       217 ~~L~l~~~~l~~--lP~~i~~~L~~L~~L~l~~~~l~~lP  254 (257)
                      ++|++++|.+..  +|..+ +.+++|++|++++|++..++
T Consensus       151 ~~L~Ls~N~l~~~~~~~~~-~~l~~L~~L~L~~N~l~~~~  189 (635)
T 4g8a_A          151 KELNVAHNLIQSFKLPEYF-SNLTNLEHLDLSSNKIQSIY  189 (635)
T ss_dssp             CEEECCSSCCCCCCCCGGG-GGCTTCCEEECCSSCCCEEC
T ss_pred             CeeccccCccccCCCchhh-ccchhhhhhcccCccccccc
Confidence            888888777653  46666 77788888888877766554

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=99.00  E-value=8e-10  Score=87.28  Aligned_cols=105  Identities=14%  Similarity=0.081  Sum_probs=80.6

Q ss_pred             CcEEEEEEeCCCCcc-c-c--ccCCCCCccEEEeecCCCCCCCcccchHhhccCcccceEEEeCCCCccCc-hhcCCCCC
Q 037304          141 ENVKRFTAHGNLNDF-A-F--LDHFDSFLHSLLHLTSGSHYLNPTYCEKICKMFKFLRVLDLGSLVLIRYP-FEIENLFL  215 (257)
Q Consensus       141 ~~~r~L~~~~~~~~~-~-~--~~~~~~~Lrsl~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~l~~lp-~~i~~L~~  215 (257)
                      ..++.|.+..+.... + .  ...++ +|+.|.+.++...    ...+..|.++++|+.|+|++|.+..+| ..++.+++
T Consensus        29 ~~l~~L~l~~n~i~~~~~~~~~~~l~-~L~~L~Ls~N~l~----~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~  103 (192)
T 1w8a_A           29 LHTTELLLNDNELGRISSDGLFGRLP-HLVKLELKRNQLT----GIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQ  103 (192)
T ss_dssp             TTCSEEECCSCCCCSBCCSCSGGGCT-TCCEEECCSSCCC----CBCTTTTTTCTTCCEEECCSCCCCEECSSSSTTCTT
T ss_pred             CCCCEEECCCCcCCccCCccccccCC-CCCEEECCCCCCC----CcCHhHcCCcccCCEEECCCCcCCccCHHHhcCCCC
Confidence            467788887776543 2 1  45677 8888888887754    455677888889999999999888765 45788889


Q ss_pred             CcEEEccCCCcccc-chhHHhcCccccEeeccCCCCC
Q 037304          216 LRYLHLNIPSLKSL-PSSLLNSLLNLYTLDKPFSYID  251 (257)
Q Consensus       216 L~~L~l~~~~l~~l-P~~i~~~L~~L~~L~l~~~~l~  251 (257)
                      |++|++++|.++.+ |..+ +.+++|++|++++|.+.
T Consensus       104 L~~L~L~~N~l~~~~~~~~-~~l~~L~~L~L~~N~l~  139 (192)
T 1w8a_A          104 LKTLNLYDNQISCVMPGSF-EHLNSLTSLNLASNPFN  139 (192)
T ss_dssp             CCEEECCSSCCCEECTTSS-TTCTTCCEEECTTCCBC
T ss_pred             CCEEECCCCcCCeeCHHHh-hcCCCCCEEEeCCCCcc
Confidence            99999999888866 5556 88889999999888754

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=99.00  E-value=1.3e-09  Score=90.58  Aligned_cols=104  Identities=21%  Similarity=0.154  Sum_probs=52.5

Q ss_pred             CcEEEEEEeCCCCcc-cc--ccCCCCCccEEEeecCCCCCCCcccchHhhccCcccceEEEeCCCCccCchh-cCCCCCC
Q 037304          141 ENVKRFTAHGNLNDF-AF--LDHFDSFLHSLLHLTSGSHYLNPTYCEKICKMFKFLRVLDLGSLVLIRYPFE-IENLFLL  216 (257)
Q Consensus       141 ~~~r~L~~~~~~~~~-~~--~~~~~~~Lrsl~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~l~~lp~~-i~~L~~L  216 (257)
                      ..++.|.+..+.... +.  ...++ +|+.|.+.++...    ...+..|..+++|+.|++++|.+..+|.. ++.+++|
T Consensus       109 ~~L~~L~L~~n~l~~~~~~~~~~l~-~L~~L~L~~n~l~----~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L  183 (272)
T 3rfs_A          109 TNLKELVLVENQLQSLPDGVFDKLT-NLTYLNLAHNQLQ----SLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQL  183 (272)
T ss_dssp             TTCCEEECTTSCCCCCCTTTTTTCT-TCCEEECCSSCCC----CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTC
T ss_pred             cCCCEEECCCCcCCccCHHHhccCC-CCCEEECCCCccC----ccCHHHhccCccCCEEECCCCCcCccCHHHhcCCccC
Confidence            445555555444332 11  23444 5555555555432    23334455555555555555555544432 3555555


Q ss_pred             cEEEccCCCccccchhHHhcCccccEeeccCCC
Q 037304          217 RYLHLNIPSLKSLPSSLLNSLLNLYTLDKPFSY  249 (257)
Q Consensus       217 ~~L~l~~~~l~~lP~~i~~~L~~L~~L~l~~~~  249 (257)
                      ++|++++|.++.+|+..|+++++|++|++++|.
T Consensus       184 ~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~  216 (272)
T 3rfs_A          184 KDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNP  216 (272)
T ss_dssp             CEEECCSSCCSCCCTTTTTTCTTCCEEECCSSC
T ss_pred             CEEECCCCcCCccCHHHHhCCcCCCEEEccCCC
Confidence            555555555555554433555555555555554

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=98.99  E-value=1.1e-09  Score=94.82  Aligned_cols=109  Identities=21%  Similarity=0.167  Sum_probs=68.9

Q ss_pred             CcEEEEEEeCCCCcc---ccccCCCCCccEEEeecCCCCCCCcccchHhhccCcccceEEEeCCCCccC-chhcCCCCCC
Q 037304          141 ENVKRFTAHGNLNDF---AFLDHFDSFLHSLLHLTSGSHYLNPTYCEKICKMFKFLRVLDLGSLVLIRY-PFEIENLFLL  216 (257)
Q Consensus       141 ~~~r~L~~~~~~~~~---~~~~~~~~~Lrsl~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~l~~l-p~~i~~L~~L  216 (257)
                      ..++.|.+..+....   .....++ +|+.|.+.++...    .+.+..|..+++|+.|+|++|.+..+ |..+..+++|
T Consensus        64 ~~L~~L~L~~N~i~~i~~~~~~~l~-~L~~L~Ls~N~l~----~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L  138 (361)
T 2xot_A           64 TNLHSLLLSHNHLNFISSEAFVPVP-NLRYLDLSSNHLH----TLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQL  138 (361)
T ss_dssp             TTCCEEECCSSCCCEECTTTTTTCT-TCCEEECCSSCCC----EECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTC
T ss_pred             cccCEEECCCCcCCccChhhccCCC-CCCEEECCCCcCC----cCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccC
Confidence            445566665554432   1234555 6666666666542    34455667777777777777777655 5667777777


Q ss_pred             cEEEccCCCccccchhHH---hcCccccEeeccCCCCCcCC
Q 037304          217 RYLHLNIPSLKSLPSSLL---NSLLNLYTLDKPFSYIDHTV  254 (257)
Q Consensus       217 ~~L~l~~~~l~~lP~~i~---~~L~~L~~L~l~~~~l~~lP  254 (257)
                      ++|+|++|.++.+|..+|   +++++|++|+|++|.+..+|
T Consensus       139 ~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~  179 (361)
T 2xot_A          139 QKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLKKLP  179 (361)
T ss_dssp             CEEECCSSCCCSCCGGGTC----CTTCCEEECCSSCCCCCC
T ss_pred             CEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCCCCCccC
Confidence            777777777777777664   35777777777777776665

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=98.99  E-value=1.2e-09  Score=88.23  Aligned_cols=105  Identities=16%  Similarity=0.134  Sum_probs=89.5

Q ss_pred             CcEEEEEEeCCCCcc---ccccCCCCCccEEEeecCCCCCCCcccchHhhccCcccceEEEeCCCCccC-chhcCCCCCC
Q 037304          141 ENVKRFTAHGNLNDF---AFLDHFDSFLHSLLHLTSGSHYLNPTYCEKICKMFKFLRVLDLGSLVLIRY-PFEIENLFLL  216 (257)
Q Consensus       141 ~~~r~L~~~~~~~~~---~~~~~~~~~Lrsl~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~l~~l-p~~i~~L~~L  216 (257)
                      ..++.|.+..+....   .....++ +|+.|.+.++...    ...+..|..+++|+.|+|++|.+..+ |..++.+++|
T Consensus        57 ~~L~~L~L~~N~i~~i~~~~~~~l~-~L~~L~Ls~N~l~----~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L  131 (220)
T 2v70_A           57 PQLRKINFSNNKITDIEEGAFEGAS-GVNEILLTSNRLE----NVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSV  131 (220)
T ss_dssp             TTCCEEECCSSCCCEECTTTTTTCT-TCCEEECCSSCCC----CCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTC
T ss_pred             CCCCEEECCCCcCCEECHHHhCCCC-CCCEEECCCCccC----ccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccC
Confidence            678888888877654   2456778 9999999988764    45677899999999999999999977 6889999999


Q ss_pred             cEEEccCCCcccc-chhHHhcCccccEeeccCCCCC
Q 037304          217 RYLHLNIPSLKSL-PSSLLNSLLNLYTLDKPFSYID  251 (257)
Q Consensus       217 ~~L~l~~~~l~~l-P~~i~~~L~~L~~L~l~~~~l~  251 (257)
                      ++|++++|.++.+ |..+ ..+++|++|++++|.+.
T Consensus       132 ~~L~L~~N~l~~~~~~~~-~~l~~L~~L~L~~N~l~  166 (220)
T 2v70_A          132 RLLSLYDNQITTVAPGAF-DTLHSLSTLNLLANPFN  166 (220)
T ss_dssp             SEEECTTSCCCCBCTTTT-TTCTTCCEEECCSCCEE
T ss_pred             CEEECCCCcCCEECHHHh-cCCCCCCEEEecCcCCc
Confidence            9999999999988 5666 99999999999998753

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=98.97  E-value=1.2e-09  Score=86.30  Aligned_cols=87  Identities=18%  Similarity=0.138  Sum_probs=74.3

Q ss_pred             CccEEEeecCCCCCCCcccch-HhhccCcccceEEEeCCCCccC-chhcCCCCCCcEEEccCCCccccchhHHhcCcccc
Q 037304          164 FLHSLLHLTSGSHYLNPTYCE-KICKMFKFLRVLDLGSLVLIRY-PFEIENLFLLRYLHLNIPSLKSLPSSLLNSLLNLY  241 (257)
Q Consensus       164 ~Lrsl~l~~~~~~~~~~~~~~-~~~~~l~~Lr~L~L~~~~l~~l-p~~i~~L~~L~~L~l~~~~l~~lP~~i~~~L~~L~  241 (257)
                      .++.|.+.++...    ...+ ..|..+++|+.|+|++|.++.+ |..++.+++|++|++++|.++.+|...|+.+++|+
T Consensus        30 ~l~~L~l~~n~i~----~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~  105 (192)
T 1w8a_A           30 HTTELLLNDNELG----RISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLK  105 (192)
T ss_dssp             TCSEEECCSCCCC----SBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCCCCEECSSSSTTCTTCC
T ss_pred             CCCEEECCCCcCC----ccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCCcCCccCHHHhcCCCCCC
Confidence            8999999888764    2333 3589999999999999999977 78899999999999999999988876438999999


Q ss_pred             EeeccCCCCCcCC
Q 037304          242 TLDKPFSYIDHTV  254 (257)
Q Consensus       242 ~L~l~~~~l~~lP  254 (257)
                      +|++++|++..++
T Consensus       106 ~L~L~~N~l~~~~  118 (192)
T 1w8a_A          106 TLNLYDNQISCVM  118 (192)
T ss_dssp             EEECCSSCCCEEC
T ss_pred             EEECCCCcCCeeC
Confidence            9999999987653

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=98.97  E-value=1.1e-09  Score=94.93  Aligned_cols=110  Identities=20%  Similarity=0.061  Sum_probs=91.3

Q ss_pred             CcEEEEEEeCCCCcc--cc-cc-CCCCCccEEEeecCCCCCCCcccchHhhccCcccceEEEeCCCCccCch-hcCCCCC
Q 037304          141 ENVKRFTAHGNLNDF--AF-LD-HFDSFLHSLLHLTSGSHYLNPTYCEKICKMFKFLRVLDLGSLVLIRYPF-EIENLFL  215 (257)
Q Consensus       141 ~~~r~L~~~~~~~~~--~~-~~-~~~~~Lrsl~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~l~~lp~-~i~~L~~  215 (257)
                      ..++.|.+..+....  +. .. .++ +|+.|.+.++...    .+.+..|..+++|+.|+|++|.+..+|. .+..+++
T Consensus        39 ~~l~~L~Ls~N~l~~l~~~~~~~~l~-~L~~L~L~~N~i~----~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~  113 (361)
T 2xot_A           39 SYTALLDLSHNNLSRLRAEWTPTRLT-NLHSLLLSHNHLN----FISSEAFVPVPNLRYLDLSSNHLHTLDEFLFSDLQA  113 (361)
T ss_dssp             TTCSEEECCSSCCCEECTTSSSSCCT-TCCEEECCSSCCC----EECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTT
T ss_pred             CCCCEEECCCCCCCccChhhhhhccc-ccCEEECCCCcCC----ccChhhccCCCCCCEEECCCCcCCcCCHHHhCCCcC
Confidence            557788888877654  22 23 778 9999999988754    4566789999999999999999998864 6889999


Q ss_pred             CcEEEccCCCccccc-hhHHhcCccccEeeccCCCCCcCCCC
Q 037304          216 LRYLHLNIPSLKSLP-SSLLNSLLNLYTLDKPFSYIDHTVDE  256 (257)
Q Consensus       216 L~~L~l~~~~l~~lP-~~i~~~L~~L~~L~l~~~~l~~lP~~  256 (257)
                      |++|+|++|.+..++ ..+ ..+++|+.|+|++|.+..+|..
T Consensus       114 L~~L~L~~N~i~~~~~~~~-~~l~~L~~L~L~~N~l~~l~~~  154 (361)
T 2xot_A          114 LEVLLLYNNHIVVVDRNAF-EDMAQLQKLYLSQNQISRFPVE  154 (361)
T ss_dssp             CCEEECCSSCCCEECTTTT-TTCTTCCEEECCSSCCCSCCGG
T ss_pred             CCEEECCCCcccEECHHHh-CCcccCCEEECCCCcCCeeCHH
Confidence            999999999999885 456 9999999999999999988753

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=98.96  E-value=8.9e-10  Score=101.50  Aligned_cols=108  Identities=17%  Similarity=0.204  Sum_probs=60.7

Q ss_pred             CcEEEEEEeCCCCcc--c-cccCCCCCccEEEeecCCCCCCCcccchHhhccCcccceEEEeCCCCccCc-hhcCCCCCC
Q 037304          141 ENVKRFTAHGNLNDF--A-FLDHFDSFLHSLLHLTSGSHYLNPTYCEKICKMFKFLRVLDLGSLVLIRYP-FEIENLFLL  216 (257)
Q Consensus       141 ~~~r~L~~~~~~~~~--~-~~~~~~~~Lrsl~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~l~~lp-~~i~~L~~L  216 (257)
                      ..+++|.+..+....  + ...+++ +|++|.+.++...    ...+..|.++++|++|++++|.+..+| ..++++++|
T Consensus        56 ~~L~~L~Ls~n~l~~i~~~~~~~l~-~L~~L~Ls~n~l~----~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L  130 (606)
T 3vq2_A           56 SELQWLDLSRCEIETIEDKAWHGLH-HLSNLILTGNPIQ----SFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITL  130 (606)
T ss_dssp             TTCCEEECTTCCCCEECTTTTTTCT-TCCEEECTTCCCC----CCCTTSSTTCTTCCEEECTTSCCCCSSSSCCTTCTTC
T ss_pred             ccCcEEeCCCCcccccCHHHhhchh-hcCEeECCCCccc----ccChhhcCCcccCCEEEccCCccccccccccCCCCCC
Confidence            445555555443332  1 223445 5555555555432    233455666666666666666665554 556666666


Q ss_pred             cEEEccCCCcc--ccchhHHhcCccccEeeccCCCCCcCC
Q 037304          217 RYLHLNIPSLK--SLPSSLLNSLLNLYTLDKPFSYIDHTV  254 (257)
Q Consensus       217 ~~L~l~~~~l~--~lP~~i~~~L~~L~~L~l~~~~l~~lP  254 (257)
                      ++|++++|.+.  .+|..+ +++++|++|++++|.+..+|
T Consensus       131 ~~L~L~~n~l~~~~lp~~~-~~l~~L~~L~Ls~n~l~~~~  169 (606)
T 3vq2_A          131 KKLNVAHNFIHSCKLPAYF-SNLTNLVHVDLSYNYIQTIT  169 (606)
T ss_dssp             CEEECCSSCCCCCCCCGGG-GTCTTCCEEECCSSCCCEEC
T ss_pred             CEEeCCCCcccceechHhH-hhcCCCCEEEccCCcceecC
Confidence            66666666655  356666 66667777777666655543

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=98.96  E-value=1.8e-09  Score=90.23  Aligned_cols=108  Identities=19%  Similarity=0.145  Sum_probs=64.4

Q ss_pred             CcEEEEEEeCCC-Ccc---ccccCCCCCccEEEeecCCCCCCCcccchHhhccCcccceEEEeCCCCccCch-hcCCCCC
Q 037304          141 ENVKRFTAHGNL-NDF---AFLDHFDSFLHSLLHLTSGSHYLNPTYCEKICKMFKFLRVLDLGSLVLIRYPF-EIENLFL  215 (257)
Q Consensus       141 ~~~r~L~~~~~~-~~~---~~~~~~~~~Lrsl~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~l~~lp~-~i~~L~~  215 (257)
                      ..++.|.+..+. ...   .....++ +|+.|.+.++...    ...+..+..+++|+.|++++|.+..+|. .++.+++
T Consensus        80 ~~L~~L~l~~n~~l~~~~~~~~~~l~-~L~~L~l~~n~l~----~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~  154 (285)
T 1ozn_A           80 ALLEQLDLSDNAQLRSVDPATFHGLG-RLHTLHLDRCGLQ----ELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGN  154 (285)
T ss_dssp             TTCCEEECCSCTTCCCCCTTTTTTCT-TCCEEECTTSCCC----CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTT
T ss_pred             cCCCEEeCCCCCCccccCHHHhcCCc-CCCEEECCCCcCC----EECHhHhhCCcCCCEEECCCCcccccCHhHhccCCC
Confidence            445555555543 221   1233445 6666666555432    2344556667777777777777666653 3666777


Q ss_pred             CcEEEccCCCccccchhHHhcCccccEeeccCCCCCcC
Q 037304          216 LRYLHLNIPSLKSLPSSLLNSLLNLYTLDKPFSYIDHT  253 (257)
Q Consensus       216 L~~L~l~~~~l~~lP~~i~~~L~~L~~L~l~~~~l~~l  253 (257)
                      |++|++++|.++.+|...|..+++|++|++++|.+..+
T Consensus       155 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~  192 (285)
T 1ozn_A          155 LTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHV  192 (285)
T ss_dssp             CCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEE
T ss_pred             ccEEECCCCcccccCHHHhcCccccCEEECCCCccccc
Confidence            77777777777766664226777777777777765544

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=98.96  E-value=1.5e-09  Score=94.80  Aligned_cols=109  Identities=20%  Similarity=0.144  Sum_probs=55.6

Q ss_pred             CcEEEEEEeCCCCcc-cc--ccCCCCCccEEEeecCCCCCCCcccchHhhccCcccceEEEeCCCCccCc-hhcCCCCCC
Q 037304          141 ENVKRFTAHGNLNDF-AF--LDHFDSFLHSLLHLTSGSHYLNPTYCEKICKMFKFLRVLDLGSLVLIRYP-FEIENLFLL  216 (257)
Q Consensus       141 ~~~r~L~~~~~~~~~-~~--~~~~~~~Lrsl~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~l~~lp-~~i~~L~~L  216 (257)
                      ..++++.+..+.... +.  ...++ +|+.|.+.++...    ...+..|..+++|+.|++++|.+..+| ..++.+++|
T Consensus        45 ~~l~~l~l~~~~l~~l~~~~~~~l~-~L~~L~L~~n~i~----~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L  119 (390)
T 3o6n_A           45 NNQKIVTFKNSTMRKLPAALLDSFR-QVELLNLNDLQIE----EIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLL  119 (390)
T ss_dssp             CCCSEEEEESCEESEECTHHHHHCC-CCSEEECTTSCCC----EECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTC
T ss_pred             CCceEEEecCCchhhCChhHhcccc-cCcEEECCCCccc----ccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCC
Confidence            455556655544332 21  23445 5666665555432    233345555555555555555555442 334555555


Q ss_pred             cEEEccCCCccccchhHHhcCccccEeeccCCCCCcCC
Q 037304          217 RYLHLNIPSLKSLPSSLLNSLLNLYTLDKPFSYIDHTV  254 (257)
Q Consensus       217 ~~L~l~~~~l~~lP~~i~~~L~~L~~L~l~~~~l~~lP  254 (257)
                      ++|++++|.++.+|..+|+++++|++|++++|.+..+|
T Consensus       120 ~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~  157 (390)
T 3o6n_A          120 TVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIE  157 (390)
T ss_dssp             CEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCC
T ss_pred             CEEECCCCccCcCCHHHhcCCCCCcEEECCCCccCccC
Confidence            55555555555555553355555555555555544443

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=98.94  E-value=2.6e-09  Score=91.09  Aligned_cols=109  Identities=16%  Similarity=-0.032  Sum_probs=80.7

Q ss_pred             CcEEEEEEeCCCCccccccCCCCCccEEEeecCCCCCCCcccchHhhccCcccceEEEeCCCCccCc-hhcCCCCCCcEE
Q 037304          141 ENVKRFTAHGNLNDFAFLDHFDSFLHSLLHLTSGSHYLNPTYCEKICKMFKFLRVLDLGSLVLIRYP-FEIENLFLLRYL  219 (257)
Q Consensus       141 ~~~r~L~~~~~~~~~~~~~~~~~~Lrsl~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~l~~lp-~~i~~L~~L~~L  219 (257)
                      ..++.+.+..+........-.+ +|+.|.+.++...    ...+..|..+++|+.|++++|.+..++ ..++.+++|++|
T Consensus       171 ~~L~~L~l~~n~l~~l~~~~~~-~L~~L~l~~n~l~----~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L  245 (330)
T 1xku_A          171 KKLSYIRIADTNITTIPQGLPP-SLTELHLDGNKIT----KVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLREL  245 (330)
T ss_dssp             TTCCEEECCSSCCCSCCSSCCT-TCSEEECTTSCCC----EECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEE
T ss_pred             CCcCEEECCCCccccCCccccc-cCCEEECCCCcCC----ccCHHHhcCCCCCCEEECCCCcCceeChhhccCCCCCCEE
Confidence            4455555555443321111124 6667766666542    345677889999999999999988665 478889999999


Q ss_pred             EccCCCccccchhHHhcCccccEeeccCCCCCcCCC
Q 037304          220 HLNIPSLKSLPSSLLNSLLNLYTLDKPFSYIDHTVD  255 (257)
Q Consensus       220 ~l~~~~l~~lP~~i~~~L~~L~~L~l~~~~l~~lP~  255 (257)
                      ++++|.+..+|..+ +.+++|++|++++|.+..+|.
T Consensus       246 ~L~~N~l~~lp~~l-~~l~~L~~L~l~~N~i~~~~~  280 (330)
T 1xku_A          246 HLNNNKLVKVPGGL-ADHKYIQVVYLHNNNISAIGS  280 (330)
T ss_dssp             ECCSSCCSSCCTTT-TTCSSCCEEECCSSCCCCCCT
T ss_pred             ECCCCcCccCChhh-ccCCCcCEEECCCCcCCccCh
Confidence            99999999999998 999999999999999888775

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=98.93  E-value=1.5e-09  Score=84.41  Aligned_cols=107  Identities=17%  Similarity=0.069  Sum_probs=88.1

Q ss_pred             CcEEEEEEeCCCCcc-ccccC-CCCCccEEEeecCCCCCCCcccchHhhccCcccceEEEeCCCCccCchhc-CCCCCCc
Q 037304          141 ENVKRFTAHGNLNDF-AFLDH-FDSFLHSLLHLTSGSHYLNPTYCEKICKMFKFLRVLDLGSLVLIRYPFEI-ENLFLLR  217 (257)
Q Consensus       141 ~~~r~L~~~~~~~~~-~~~~~-~~~~Lrsl~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~l~~lp~~i-~~L~~L~  217 (257)
                      ..++.|.+.++.... +.... .+ +|+.|.+.++...    ..  ..+..+++|++|++++|.+..+|..+ +.+++|+
T Consensus        19 ~~L~~L~l~~n~l~~i~~~~~~~~-~L~~L~Ls~N~l~----~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~   91 (176)
T 1a9n_A           19 VRDRELDLRGYKIPVIENLGATLD-QFDAIDFSDNEIR----KL--DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLT   91 (176)
T ss_dssp             TSCEEEECTTSCCCSCCCGGGGTT-CCSEEECCSSCCC----EE--CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCC
T ss_pred             CCceEEEeeCCCCchhHHhhhcCC-CCCEEECCCCCCC----cc--cccccCCCCCEEECCCCcccccCcchhhcCCCCC
Confidence            567788887766543 33322 34 8999999988764    22  57889999999999999999988665 8999999


Q ss_pred             EEEccCCCccccch--hHHhcCccccEeeccCCCCCcCCC
Q 037304          218 YLHLNIPSLKSLPS--SLLNSLLNLYTLDKPFSYIDHTVD  255 (257)
Q Consensus       218 ~L~l~~~~l~~lP~--~i~~~L~~L~~L~l~~~~l~~lP~  255 (257)
                      +|++++|.+..+|.  .+ +.+++|++|++++|.+..+|.
T Consensus        92 ~L~L~~N~i~~~~~~~~l-~~l~~L~~L~l~~N~i~~~~~  130 (176)
T 1a9n_A           92 ELILTNNSLVELGDLDPL-ASLKSLTYLCILRNPVTNKKH  130 (176)
T ss_dssp             EEECCSCCCCCGGGGGGG-GGCTTCCEEECCSSGGGGSTT
T ss_pred             EEECCCCcCCcchhhHhh-hcCCCCCEEEecCCCCCCcHh
Confidence            99999999999998  77 999999999999999888775

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=98.93  E-value=3e-09  Score=88.88  Aligned_cols=111  Identities=22%  Similarity=0.149  Sum_probs=77.8

Q ss_pred             CcEEEEEEeCCCCcc---ccccCCCCCccEEEeecCCCCCCCcccchHhhccCcccceEEEeCCCCccC-chhcCCCCCC
Q 037304          141 ENVKRFTAHGNLNDF---AFLDHFDSFLHSLLHLTSGSHYLNPTYCEKICKMFKFLRVLDLGSLVLIRY-PFEIENLFLL  216 (257)
Q Consensus       141 ~~~r~L~~~~~~~~~---~~~~~~~~~Lrsl~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~l~~l-p~~i~~L~~L  216 (257)
                      ..++.|.+..+....   .....++ +|+.|.+.++..   .....+..|..+++|+.|++++|.+..+ |..++.+++|
T Consensus        56 ~~L~~L~l~~n~l~~~~~~~~~~l~-~L~~L~l~~n~~---l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L  131 (285)
T 1ozn_A           56 RNLTILWLHSNVLARIDAAAFTGLA-LLEQLDLSDNAQ---LRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAAL  131 (285)
T ss_dssp             TTCCEEECCSSCCCEECTTTTTTCT-TCCEEECCSCTT---CCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTC
T ss_pred             CCCCEEECCCCccceeCHhhcCCcc-CCCEEeCCCCCC---ccccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCC
Confidence            566677776655432   2344566 777777776652   1234456777888888888888887766 5667788888


Q ss_pred             cEEEccCCCccccchhHHhcCccccEeeccCCCCCcCCC
Q 037304          217 RYLHLNIPSLKSLPSSLLNSLLNLYTLDKPFSYIDHTVD  255 (257)
Q Consensus       217 ~~L~l~~~~l~~lP~~i~~~L~~L~~L~l~~~~l~~lP~  255 (257)
                      ++|++++|.++.+|...|+++++|++|++++|++..+|.
T Consensus       132 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~  170 (285)
T 1ozn_A          132 QYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPE  170 (285)
T ss_dssp             CEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECT
T ss_pred             CEEECCCCcccccCHhHhccCCCccEEECCCCcccccCH
Confidence            888888888887776633788888888888888776664

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=98.92  E-value=3.1e-09  Score=86.55  Aligned_cols=109  Identities=13%  Similarity=0.101  Sum_probs=64.3

Q ss_pred             CcEEEEEEeCCC-Cc-cc--cccCCCCCccEEEeec-CCCCCCCcccchHhhccCcccceEEEeCCCCccCchhcCCCCC
Q 037304          141 ENVKRFTAHGNL-ND-FA--FLDHFDSFLHSLLHLT-SGSHYLNPTYCEKICKMFKFLRVLDLGSLVLIRYPFEIENLFL  215 (257)
Q Consensus       141 ~~~r~L~~~~~~-~~-~~--~~~~~~~~Lrsl~l~~-~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~l~~lp~~i~~L~~  215 (257)
                      ..++.|.+..+. .. .+  ...+++ +|+.|.+.+ +...    .+.+..|.++++|+.|++++|.+..+|. ++.+++
T Consensus        55 ~~L~~L~l~~n~~l~~i~~~~f~~l~-~L~~L~l~~~n~l~----~i~~~~f~~l~~L~~L~l~~n~l~~lp~-~~~l~~  128 (239)
T 2xwt_C           55 PNISRIYVSIDVTLQQLESHSFYNLS-KVTHIEIRNTRNLT----YIDPDALKELPLLKFLGIFNTGLKMFPD-LTKVYS  128 (239)
T ss_dssp             TTCCEEEEECCSSCCEECTTTEESCT-TCCEEEEEEETTCC----EECTTSEECCTTCCEEEEEEECCCSCCC-CTTCCB
T ss_pred             CCCcEEeCCCCCCcceeCHhHcCCCc-CCcEEECCCCCCee----EcCHHHhCCCCCCCEEeCCCCCCccccc-cccccc
Confidence            556666666664 32 22  234556 677776665 4432    3444556666667777776666666665 555555


Q ss_pred             Cc---EEEccCC-CccccchhHHhcCcccc-EeeccCCCCCcCCC
Q 037304          216 LR---YLHLNIP-SLKSLPSSLLNSLLNLY-TLDKPFSYIDHTVD  255 (257)
Q Consensus       216 L~---~L~l~~~-~l~~lP~~i~~~L~~L~-~L~l~~~~l~~lP~  255 (257)
                      |+   +|++++| .++.+|...|+.+.+|+ +|++++|.+..+|.
T Consensus       129 L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~~i~~  173 (239)
T 2xwt_C          129 TDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFTSVQG  173 (239)
T ss_dssp             CCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCCEECT
T ss_pred             cccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCcccCH
Confidence            55   6666666 56666654336666666 66666666655554

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=98.92  E-value=2.5e-09  Score=93.33  Aligned_cols=107  Identities=13%  Similarity=-0.020  Sum_probs=80.7

Q ss_pred             cEEEEEEeCCCCcc-ccccCCCCCccEEEeecCCCCCCCcccchHhhccCcccceEEEeCCCCccCchhcCCCCCCcEEE
Q 037304          142 NVKRFTAHGNLNDF-AFLDHFDSFLHSLLHLTSGSHYLNPTYCEKICKMFKFLRVLDLGSLVLIRYPFEIENLFLLRYLH  220 (257)
Q Consensus       142 ~~r~L~~~~~~~~~-~~~~~~~~~Lrsl~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~l~~lp~~i~~L~~L~~L~  220 (257)
                      .++.|.+..+.... +....++ +|+.|.+.++...    ...+..|..+++|+.|++++|.+..+|..++.+++|++|+
T Consensus       227 ~L~~L~l~~n~l~~~~~l~~l~-~L~~L~Ls~n~l~----~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~l~~L~~L~  301 (390)
T 3o6n_A          227 ELTILKLQHNNLTDTAWLLNYP-GLVEVDLSYNELE----KIMYHPFVKMQRLERLYISNNRLVALNLYGQPIPTLKVLD  301 (390)
T ss_dssp             SCCEEECCSSCCCCCGGGGGCT-TCSEEECCSSCCC----EEESGGGTTCSSCCEEECCSSCCCEEECSSSCCTTCCEEE
T ss_pred             cccEEECCCCCCcccHHHcCCC-CccEEECCCCcCC----CcChhHccccccCCEEECCCCcCcccCcccCCCCCCCEEE
Confidence            34455554444332 3345566 7788877777543    4556778888889999999888888888888888899999


Q ss_pred             ccCCCccccchhHHhcCccccEeeccCCCCCcCC
Q 037304          221 LNIPSLKSLPSSLLNSLLNLYTLDKPFSYIDHTV  254 (257)
Q Consensus       221 l~~~~l~~lP~~i~~~L~~L~~L~l~~~~l~~lP  254 (257)
                      +++|.+..+|..+ +.+++|++|++++|.+..+|
T Consensus       302 L~~n~l~~~~~~~-~~l~~L~~L~L~~N~i~~~~  334 (390)
T 3o6n_A          302 LSHNHLLHVERNQ-PQFDRLENLYLDHNSIVTLK  334 (390)
T ss_dssp             CCSSCCCCCGGGH-HHHTTCSEEECCSSCCCCCC
T ss_pred             CCCCcceecCccc-cccCcCCEEECCCCccceeC
Confidence            9998888888888 88889999999888877665

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=98.92  E-value=1.4e-09  Score=99.87  Aligned_cols=85  Identities=15%  Similarity=0.095  Sum_probs=75.0

Q ss_pred             CccEEEeecCCCCCCCcccchHhhccCcccceEEEeCCCCccCchhcCCCCCCcEEEccCCCccccchhHHhcCccccEe
Q 037304          164 FLHSLLHLTSGSHYLNPTYCEKICKMFKFLRVLDLGSLVLIRYPFEIENLFLLRYLHLNIPSLKSLPSSLLNSLLNLYTL  243 (257)
Q Consensus       164 ~Lrsl~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~l~~lp~~i~~L~~L~~L~l~~~~l~~lP~~i~~~L~~L~~L  243 (257)
                      .++.|.+.++...    . +|. +..+++|+.|+|++|.+..+|..++.+++|++|+|++|.++.+| ++ ++|++|++|
T Consensus       442 ~L~~L~Ls~n~l~----~-lp~-~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l~~lp-~l-~~l~~L~~L  513 (567)
T 1dce_A          442 DVRVLHLAHKDLT----V-LCH-LEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALENVD-GV-ANLPRLQEL  513 (567)
T ss_dssp             TCSEEECTTSCCS----S-CCC-GGGGTTCCEEECCSSCCCCCCGGGGGCTTCCEEECCSSCCCCCG-GG-TTCSSCCEE
T ss_pred             CceEEEecCCCCC----C-CcC-ccccccCcEeecCcccccccchhhhcCCCCCEEECCCCCCCCCc-cc-CCCCCCcEE
Confidence            5778888887654    2 344 89999999999999999999999999999999999999999999 88 999999999


Q ss_pred             eccCCCCCcC--CCC
Q 037304          244 DKPFSYIDHT--VDE  256 (257)
Q Consensus       244 ~l~~~~l~~l--P~~  256 (257)
                      +|++|.+..+  |..
T Consensus       514 ~Ls~N~l~~~~~p~~  528 (567)
T 1dce_A          514 LLCNNRLQQSAAIQP  528 (567)
T ss_dssp             ECCSSCCCSSSTTGG
T ss_pred             ECCCCCCCCCCCcHH
Confidence            9999999887  543

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=98.91  E-value=1.1e-09  Score=82.49  Aligned_cols=88  Identities=19%  Similarity=0.085  Sum_probs=75.2

Q ss_pred             CCCCccEEEeecCCCCCCCcccchHhhccCcccceEEEeCCCCccCchhcCCCCCCcEEEccCCCccc-cchhHHhcCcc
Q 037304          161 FDSFLHSLLHLTSGSHYLNPTYCEKICKMFKFLRVLDLGSLVLIRYPFEIENLFLLRYLHLNIPSLKS-LPSSLLNSLLN  239 (257)
Q Consensus       161 ~~~~Lrsl~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~l~~lp~~i~~L~~L~~L~l~~~~l~~-lP~~i~~~L~~  239 (257)
                      .+ +++.|.+.++...   ....+..+..+++|+.|++++|.+..+ ..++.+++|++|++++|.++. +|..+ +++++
T Consensus        16 ~~-~l~~L~l~~n~l~---~~~~~~~~~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~Ls~n~i~~~~~~~~-~~l~~   89 (149)
T 2je0_A           16 PS-DVKELVLDNSRSN---EGKLEGLTDEFEELEFLSTINVGLTSI-ANLPKLNKLKKLELSDNRVSGGLEVLA-EKCPN   89 (149)
T ss_dssp             GG-GCSEEECTTCBCB---TTBCCSCCTTCTTCCEEECTTSCCCCC-TTCCCCTTCCEEECCSSCCCSCTHHHH-HHCTT
T ss_pred             Cc-cCeEEEccCCcCC---hhHHHHHHhhcCCCcEEECcCCCCCCc-hhhhcCCCCCEEECCCCcccchHHHHh-hhCCC
Confidence            35 8999999888653   124456788999999999999999888 789999999999999999987 78777 88999


Q ss_pred             ccEeeccCCCCCcCC
Q 037304          240 LYTLDKPFSYIDHTV  254 (257)
Q Consensus       240 L~~L~l~~~~l~~lP  254 (257)
                      |++|++++|.+..+|
T Consensus        90 L~~L~ls~N~i~~~~  104 (149)
T 2je0_A           90 LTHLNLSGNKIKDLS  104 (149)
T ss_dssp             CCEEECTTSCCCSHH
T ss_pred             CCEEECCCCcCCChH
Confidence            999999999987654

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=98.91  E-value=2.7e-09  Score=88.76  Aligned_cols=108  Identities=17%  Similarity=0.099  Sum_probs=62.3

Q ss_pred             CcEEEEEEeCCCCcc-c--cccCCCCCccEEEeecCCCCCCCcccchHhhccCcccceEEEeCCCCccCch-hcCCCCCC
Q 037304          141 ENVKRFTAHGNLNDF-A--FLDHFDSFLHSLLHLTSGSHYLNPTYCEKICKMFKFLRVLDLGSLVLIRYPF-EIENLFLL  216 (257)
Q Consensus       141 ~~~r~L~~~~~~~~~-~--~~~~~~~~Lrsl~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~l~~lp~-~i~~L~~L  216 (257)
                      ..++.|.+..+.... +  ....++ +|++|.+.++...    ...+..|.++++|+.|++++|.+..++. .++.+++|
T Consensus        52 ~~L~~L~l~~n~l~~~~~~~~~~l~-~L~~L~L~~n~l~----~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L  126 (276)
T 2z62_A           52 PELQVLDLSRCEIQTIEDGAYQSLS-HLSTLILTGNPIQ----SLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTL  126 (276)
T ss_dssp             TTCSEEECTTCCCCEECTTTTTTCT-TCCEEECTTCCCC----EECTTTTTTCTTCCEEECTTSCCCCSTTCCCTTCTTC
T ss_pred             cCCcEEECCCCcCCccCHHHccCCc-CCCEEECCCCccC----ccChhhhcCCccccEEECCCCCccccCchhcccCCCC
Confidence            445555555544332 1  234455 6666666655432    3344556666666666666666665543 46666666


Q ss_pred             cEEEccCCCccc--cchhHHhcCccccEeeccCCCCCcCC
Q 037304          217 RYLHLNIPSLKS--LPSSLLNSLLNLYTLDKPFSYIDHTV  254 (257)
Q Consensus       217 ~~L~l~~~~l~~--lP~~i~~~L~~L~~L~l~~~~l~~lP  254 (257)
                      ++|++++|.+..  +|..+ +++++|++|++++|.+..+|
T Consensus       127 ~~L~l~~n~l~~~~l~~~~-~~l~~L~~L~Ls~N~l~~~~  165 (276)
T 2z62_A          127 KELNVAHNLIQSFKLPEYF-SNLTNLEHLDLSSNKIQSIY  165 (276)
T ss_dssp             CEEECCSSCCCCCCCCGGG-GGCTTCCEEECCSSCCCEEC
T ss_pred             CEEECcCCccceecCchhh-ccCCCCCEEECCCCCCCcCC
Confidence            666666666654  56666 66666666666666655443

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=98.91  E-value=4.2e-09  Score=81.85  Aligned_cols=66  Identities=20%  Similarity=0.211  Sum_probs=61.0

Q ss_pred             cccceEEEeCCCCccC-chhcCCCCCCcEEEccCCCccccchhHHhcCccccEeeccCCCCCcCCCC
Q 037304          191 KFLRVLDLGSLVLIRY-PFEIENLFLLRYLHLNIPSLKSLPSSLLNSLLNLYTLDKPFSYIDHTVDE  256 (257)
Q Consensus       191 ~~Lr~L~L~~~~l~~l-p~~i~~L~~L~~L~l~~~~l~~lP~~i~~~L~~L~~L~l~~~~l~~lP~~  256 (257)
                      ++|++|+|++|.+..+ |..++.+++|++|+|++|.++.+|..+|+++++|++|+|++|++..+|++
T Consensus        33 ~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~l~~l~~~   99 (174)
T 2r9u_A           33 TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNHLKSIPRG   99 (174)
T ss_dssp             TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTT
T ss_pred             CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCCccceeCHH
Confidence            7899999999999987 67899999999999999999999998658999999999999999998864

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=98.88  E-value=3e-09  Score=97.09  Aligned_cols=108  Identities=17%  Similarity=0.100  Sum_probs=67.3

Q ss_pred             CcEEEEEEeCCCCcc---ccccCCCCCccEEEeecCCCCCCCcccchHhhccCcccceEEEeCCCCccCch-hcCCCCCC
Q 037304          141 ENVKRFTAHGNLNDF---AFLDHFDSFLHSLLHLTSGSHYLNPTYCEKICKMFKFLRVLDLGSLVLIRYPF-EIENLFLL  216 (257)
Q Consensus       141 ~~~r~L~~~~~~~~~---~~~~~~~~~Lrsl~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~l~~lp~-~i~~L~~L  216 (257)
                      ..+++|.+..+....   ....+++ +|++|.+.++...    ...+..|.++++|++|++++|.+..+|. .++++++|
T Consensus        52 ~~L~~L~Ls~n~i~~i~~~~~~~l~-~L~~L~L~~n~l~----~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L  126 (570)
T 2z63_A           52 PELQVLDLSRCEIQTIEDGAYQSLS-HLSTLILTGNPIQ----SLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTL  126 (570)
T ss_dssp             SSCCEEECTTCCCCEECTTTTTTCT-TCCEEECTTCCCC----EECTTTTTTCTTCCEEECTTSCCCCSTTCSCTTCTTC
T ss_pred             CCceEEECCCCcCCccCcccccCch-hCCEEeCcCCcCC----ccCHhhhcCccccccccccccccccCCCccccccccc
Confidence            445555555544332   1233455 6666666555432    3444566677777777777777666654 57777777


Q ss_pred             cEEEccCCCccc--cchhHHhcCccccEeeccCCCCCcCC
Q 037304          217 RYLHLNIPSLKS--LPSSLLNSLLNLYTLDKPFSYIDHTV  254 (257)
Q Consensus       217 ~~L~l~~~~l~~--lP~~i~~~L~~L~~L~l~~~~l~~lP  254 (257)
                      ++|++++|.+..  +|..+ +++++|++|++++|.+..+|
T Consensus       127 ~~L~L~~n~l~~~~lp~~~-~~l~~L~~L~l~~n~l~~~~  165 (570)
T 2z63_A          127 KELNVAHNLIQSFKLPEYF-SNLTNLEHLDLSSNKIQSIY  165 (570)
T ss_dssp             CEEECCSSCCCCCCCCGGG-GGCTTCCEEECTTSCCCEEC
T ss_pred             cEEecCCCccceecChhhh-cccCCCCEEeCcCCccceec
Confidence            777777777664  57777 77777777777777766543

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=98.88  E-value=4.2e-09  Score=98.33  Aligned_cols=108  Identities=21%  Similarity=0.169  Sum_probs=83.7

Q ss_pred             CcEEEEEEeCCCCcc---ccccCCCCCccEEEeecCCCCCCCcccchHhhccCcccceEEEeCCCCccCch-hcCCCCCC
Q 037304          141 ENVKRFTAHGNLNDF---AFLDHFDSFLHSLLHLTSGSHYLNPTYCEKICKMFKFLRVLDLGSLVLIRYPF-EIENLFLL  216 (257)
Q Consensus       141 ~~~r~L~~~~~~~~~---~~~~~~~~~Lrsl~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~l~~lp~-~i~~L~~L  216 (257)
                      ..+++|.+..+....   .....++ +|++|.+.++...    ...+..|.++++|++|++++|.+..+|. .++++++|
T Consensus        25 ~~l~~L~Ls~n~l~~~~~~~~~~l~-~L~~L~Ls~n~l~----~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L   99 (680)
T 1ziw_A           25 TNITVLNLTHNQLRRLPAANFTRYS-QLTSLDVGFNTIS----KLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNL   99 (680)
T ss_dssp             TTCSEEECCSSCCCCCCGGGGGGGT-TCSEEECCSSCCC----CCCTTHHHHCTTCCEEECCSSCCCCCCTTTTTTCTTC
T ss_pred             CCCcEEECCCCCCCCcCHHHHhCCC-cCcEEECCCCccC----ccCHHHHhcccCcCEEECCCCccCccChhhhccCCCC
Confidence            577888888776543   2356677 8899988877643    4556778888899999999888888875 58888889


Q ss_pred             cEEEccCCCccccch-hHHhcCccccEeeccCCCCCcCC
Q 037304          217 RYLHLNIPSLKSLPS-SLLNSLLNLYTLDKPFSYIDHTV  254 (257)
Q Consensus       217 ~~L~l~~~~l~~lP~-~i~~~L~~L~~L~l~~~~l~~lP  254 (257)
                      ++|++++|.+..+|+ .+ +++++|++|++++|.+...|
T Consensus       100 ~~L~L~~n~l~~~~~~~~-~~l~~L~~L~Ls~n~l~~~~  137 (680)
T 1ziw_A          100 TELHLMSNSIQKIKNNPF-VKQKNLITLDLSHNGLSSTK  137 (680)
T ss_dssp             SEEECCSSCCCCCCSCTT-TTCTTCCEEECCSSCCSCCC
T ss_pred             CEEECCCCccCccChhHc-cccCCCCEEECCCCcccccC
Confidence            999998888888774 45 88888888888888766554

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=98.87  E-value=4e-09  Score=97.13  Aligned_cols=109  Identities=19%  Similarity=0.126  Sum_probs=88.1

Q ss_pred             CcEEEEEEeCCCCcc---ccccCCCCCccEEEeecCCCCCCCcccchHhhccCcccceEEEeCCCCccC-chhcCCCCCC
Q 037304          141 ENVKRFTAHGNLNDF---AFLDHFDSFLHSLLHLTSGSHYLNPTYCEKICKMFKFLRVLDLGSLVLIRY-PFEIENLFLL  216 (257)
Q Consensus       141 ~~~r~L~~~~~~~~~---~~~~~~~~~Lrsl~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~l~~l-p~~i~~L~~L  216 (257)
                      ..+++|.+..+....   ....+++ +|++|.+.++...    ...+..|.++++|++|++++|.+..+ |..++++++|
T Consensus        32 ~~l~~L~Ls~n~l~~~~~~~~~~l~-~L~~L~Ls~n~l~----~i~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L  106 (606)
T 3vq2_A           32 SSTKNIDLSFNPLKILKSYSFSNFS-ELQWLDLSRCEIE----TIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSL  106 (606)
T ss_dssp             TTCCEEECTTSCCCEECTTTTTTCT-TCCEEECTTCCCC----EECTTTTTTCTTCCEEECTTCCCCCCCTTSSTTCTTC
T ss_pred             CCcCEEECCCCCcCEeChhhccCCc-cCcEEeCCCCccc----ccCHHHhhchhhcCEeECCCCcccccChhhcCCcccC
Confidence            678888888876553   2456778 8999998887653    45677888999999999999998877 7889999999


Q ss_pred             cEEEccCCCccccc-hhHHhcCccccEeeccCCCCC--cCCC
Q 037304          217 RYLHLNIPSLKSLP-SSLLNSLLNLYTLDKPFSYID--HTVD  255 (257)
Q Consensus       217 ~~L~l~~~~l~~lP-~~i~~~L~~L~~L~l~~~~l~--~lP~  255 (257)
                      ++|++++|.+..+| ..+ +++.+|++|++++|.+.  ++|.
T Consensus       107 ~~L~L~~n~l~~~~~~~~-~~l~~L~~L~L~~n~l~~~~lp~  147 (606)
T 3vq2_A          107 ENLVAVETKLASLESFPI-GQLITLKKLNVAHNFIHSCKLPA  147 (606)
T ss_dssp             CEEECTTSCCCCSSSSCC-TTCTTCCEEECCSSCCCCCCCCG
T ss_pred             CEEEccCCcccccccccc-CCCCCCCEEeCCCCcccceechH
Confidence            99999999988887 566 99999999999999876  4565

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=98.87  E-value=5.7e-09  Score=92.68  Aligned_cols=83  Identities=20%  Similarity=0.127  Sum_probs=41.4

Q ss_pred             CccEEEeecCCCCCCCcccchHhhccCcccceEEEeCCCCccC-chhcCCCCCCcEEEccCCCccccchhHHhcCccccE
Q 037304          164 FLHSLLHLTSGSHYLNPTYCEKICKMFKFLRVLDLGSLVLIRY-PFEIENLFLLRYLHLNIPSLKSLPSSLLNSLLNLYT  242 (257)
Q Consensus       164 ~Lrsl~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~l~~l-p~~i~~L~~L~~L~l~~~~l~~lP~~i~~~L~~L~~  242 (257)
                      +|+.|.+.++...    ...+..|..+++|++|++++|.+..+ |..++.+++|++|++++|.++.+|..+|+.+++|++
T Consensus       324 ~L~~L~Ls~N~l~----~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~  399 (455)
T 3v47_A          324 HLLKLNLSQNFLG----SIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLKSVPDGIFDRLTSLQK  399 (455)
T ss_dssp             TCCEEECCSSCCC----EECGGGGTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCE
T ss_pred             cCCEEECCCCccC----CcChhHhcCcccCCEEECCCCcccccChhhccccccccEEECCCCccccCCHhHhccCCcccE
Confidence            4444444444321    23344455555555555555555533 444555555555555555555555443345555555


Q ss_pred             eeccCCCC
Q 037304          243 LDKPFSYI  250 (257)
Q Consensus       243 L~l~~~~l  250 (257)
                      |++++|.+
T Consensus       400 L~l~~N~l  407 (455)
T 3v47_A          400 IWLHTNPW  407 (455)
T ss_dssp             EECCSSCB
T ss_pred             EEccCCCc
Confidence            55555543

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=98.87  E-value=3.9e-09  Score=87.73  Aligned_cols=109  Identities=17%  Similarity=0.050  Sum_probs=89.8

Q ss_pred             CcEEEEEEeCCCCcc---ccccCCCCCccEEEeecCCCCCCCcccchHhhccCcccceEEEeCCCCccCc-hhcCCCCCC
Q 037304          141 ENVKRFTAHGNLNDF---AFLDHFDSFLHSLLHLTSGSHYLNPTYCEKICKMFKFLRVLDLGSLVLIRYP-FEIENLFLL  216 (257)
Q Consensus       141 ~~~r~L~~~~~~~~~---~~~~~~~~~Lrsl~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~l~~lp-~~i~~L~~L  216 (257)
                      ..++.|.+..+....   .....++ +|+.|.+.++...    ...+..|.++++|+.|++++|.+..++ ..++.+++|
T Consensus        28 ~~l~~L~ls~n~l~~~~~~~~~~l~-~L~~L~l~~n~l~----~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L  102 (276)
T 2z62_A           28 FSTKNLDLSFNPLRHLGSYSFFSFP-ELQVLDLSRCEIQ----TIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSL  102 (276)
T ss_dssp             TTCCEEECTTCCCCEECTTTTTTCT-TCSEEECTTCCCC----EECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTC
T ss_pred             CCccEEECCCCcccccCHhHhcccc-CCcEEECCCCcCC----ccCHHHccCCcCCCEEECCCCccCccChhhhcCCccc
Confidence            568888888776553   2456678 9999999888653    456668899999999999999998765 778999999


Q ss_pred             cEEEccCCCccccch-hHHhcCccccEeeccCCCCCc--CCC
Q 037304          217 RYLHLNIPSLKSLPS-SLLNSLLNLYTLDKPFSYIDH--TVD  255 (257)
Q Consensus       217 ~~L~l~~~~l~~lP~-~i~~~L~~L~~L~l~~~~l~~--lP~  255 (257)
                      ++|++++|.+..++. .+ +++++|++|++++|.+..  +|.
T Consensus       103 ~~L~l~~n~l~~~~~~~~-~~l~~L~~L~l~~n~l~~~~l~~  143 (276)
T 2z62_A          103 QKLVAVETNLASLENFPI-GHLKTLKELNVAHNLIQSFKLPE  143 (276)
T ss_dssp             CEEECTTSCCCCSTTCCC-TTCTTCCEEECCSSCCCCCCCCG
T ss_pred             cEEECCCCCccccCchhc-ccCCCCCEEECcCCccceecCch
Confidence            999999999998877 56 999999999999999876  454

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=98.87  E-value=3.5e-09  Score=91.20  Aligned_cols=102  Identities=24%  Similarity=0.177  Sum_probs=55.2

Q ss_pred             CcEEEEEEeCCCCcc-c--cccCCCCCccEEEeecCCCCCCCcccchHhhccCcccceEEEeCCCCccCchh-cCCCCCC
Q 037304          141 ENVKRFTAHGNLNDF-A--FLDHFDSFLHSLLHLTSGSHYLNPTYCEKICKMFKFLRVLDLGSLVLIRYPFE-IENLFLL  216 (257)
Q Consensus       141 ~~~r~L~~~~~~~~~-~--~~~~~~~~Lrsl~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~l~~lp~~-i~~L~~L  216 (257)
                      ..++.|.+..+.... +  ....++ +|++|.+.++...    ...+..|.++++|++|++++|.++.+|.. ++++++|
T Consensus        52 ~~L~~L~l~~n~i~~~~~~~~~~l~-~L~~L~L~~n~l~----~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L  126 (353)
T 2z80_A           52 EAVKSLDLSNNRITYISNSDLQRCV-NLQALVLTSNGIN----TIEEDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSL  126 (353)
T ss_dssp             TTCCEEECTTSCCCEECTTTTTTCT-TCCEEECTTSCCC----EECTTTTTTCTTCCEEECCSSCCSSCCHHHHTTCTTC
T ss_pred             ccCcEEECCCCcCcccCHHHhccCC-CCCEEECCCCccC----ccCHhhcCCCCCCCEEECCCCcCCcCCHhHhCCCccC
Confidence            355556555554332 1  234455 6666666555432    23344555566666666666665555543 5556666


Q ss_pred             cEEEccCCCccccch--hHHhcCccccEeeccCC
Q 037304          217 RYLHLNIPSLKSLPS--SLLNSLLNLYTLDKPFS  248 (257)
Q Consensus       217 ~~L~l~~~~l~~lP~--~i~~~L~~L~~L~l~~~  248 (257)
                      ++|++++|.++.+|.  .+ +++++|++|++++|
T Consensus       127 ~~L~L~~n~l~~l~~~~~~-~~l~~L~~L~l~~n  159 (353)
T 2z80_A          127 TFLNLLGNPYKTLGETSLF-SHLTKLQILRVGNM  159 (353)
T ss_dssp             SEEECTTCCCSSSCSSCSC-TTCTTCCEEEEEES
T ss_pred             CEEECCCCCCcccCchhhh-ccCCCCcEEECCCC
Confidence            666666665555555  33 55556666666555

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}

Probab=98.87  E-value=5.3e-09  Score=88.88  Aligned_cols=109  Identities=11%  Similarity=-0.089  Sum_probs=67.7

Q ss_pred             CcEEEEEEeCCCCcc---ccccCCCCCccEEEeecCCCCCCCcccchHh-hccCcccceEEEeCCCCccCchhcCCCCCC
Q 037304          141 ENVKRFTAHGNLNDF---AFLDHFDSFLHSLLHLTSGSHYLNPTYCEKI-CKMFKFLRVLDLGSLVLIRYPFEIENLFLL  216 (257)
Q Consensus       141 ~~~r~L~~~~~~~~~---~~~~~~~~~Lrsl~l~~~~~~~~~~~~~~~~-~~~l~~Lr~L~L~~~~l~~lp~~i~~L~~L  216 (257)
                      ..++.|.+..+....   .....++ +|+.|.+.++...    ...+.. +..+++|++|++++|.+..+|.. ..+++|
T Consensus       120 ~~L~~L~l~~N~l~~~~~~~~~~l~-~L~~L~Ls~N~l~----~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~-~~l~~L  193 (317)
T 3o53_A          120 QGKKNIYLANNKITMLRDLDEGCRS-RVQYLDLKLNEID----TVNFAELAASSDTLEHLNLQYNFIYDVKGQ-VVFAKL  193 (317)
T ss_dssp             SSCEEEECCSSCCCSGGGBCTGGGS-SEEEEECTTSCCC----EEEGGGGGGGTTTCCEEECTTSCCCEEECC-CCCTTC
T ss_pred             CCCCEEECCCCCCCCccchhhhccC-CCCEEECCCCCCC----cccHHHHhhccCcCCEEECCCCcCcccccc-cccccC
Confidence            345566665555432   1233455 6777777666542    222333 34667777777777777766543 346777


Q ss_pred             cEEEccCCCccccchhHHhcCccccEeeccCCCCCcCCCC
Q 037304          217 RYLHLNIPSLKSLPSSLLNSLLNLYTLDKPFSYIDHTVDE  256 (257)
Q Consensus       217 ~~L~l~~~~l~~lP~~i~~~L~~L~~L~l~~~~l~~lP~~  256 (257)
                      ++|++++|.++.+|+.+ +.+++|++|++++|.+..+|..
T Consensus       194 ~~L~Ls~N~l~~l~~~~-~~l~~L~~L~L~~N~l~~l~~~  232 (317)
T 3o53_A          194 KTLDLSSNKLAFMGPEF-QSAAGVTWISLRNNKLVLIEKA  232 (317)
T ss_dssp             CEEECCSSCCCEECGGG-GGGTTCSEEECTTSCCCEECTT
T ss_pred             CEEECCCCcCCcchhhh-cccCcccEEECcCCcccchhhH
Confidence            77777777777777776 7777777777777777666653

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=98.86  E-value=4.4e-09  Score=97.09  Aligned_cols=107  Identities=13%  Similarity=-0.020  Sum_probs=83.6

Q ss_pred             cEEEEEEeCCCCcc-ccccCCCCCccEEEeecCCCCCCCcccchHhhccCcccceEEEeCCCCccCchhcCCCCCCcEEE
Q 037304          142 NVKRFTAHGNLNDF-AFLDHFDSFLHSLLHLTSGSHYLNPTYCEKICKMFKFLRVLDLGSLVLIRYPFEIENLFLLRYLH  220 (257)
Q Consensus       142 ~~r~L~~~~~~~~~-~~~~~~~~~Lrsl~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~l~~lp~~i~~L~~L~~L~  220 (257)
                      .++.|.+..+.... +....++ +|+.|.+.++...    ...+..|..+++|+.|+|++|.+..+|..++.+++|++|+
T Consensus       233 ~L~~L~L~~n~l~~~~~l~~l~-~L~~L~Ls~N~l~----~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~L~~L~  307 (597)
T 3oja_B          233 ELTILKLQHNNLTDTAWLLNYP-GLVEVDLSYNELE----KIMYHPFVKMQRLERLYISNNRLVALNLYGQPIPTLKVLD  307 (597)
T ss_dssp             CCCEEECCSSCCCCCGGGGGCT-TCSEEECCSSCCC----EEESGGGTTCSSCCEEECTTSCCCEEECSSSCCTTCCEEE
T ss_pred             CCCEEECCCCCCCCChhhccCC-CCCEEECCCCccC----CCCHHHhcCccCCCEEECCCCCCCCCCcccccCCCCcEEE
Confidence            34555555544332 3445667 8888888777643    4567788889999999999999888888888899999999


Q ss_pred             ccCCCccccchhHHhcCccccEeeccCCCCCcCC
Q 037304          221 LNIPSLKSLPSSLLNSLLNLYTLDKPFSYIDHTV  254 (257)
Q Consensus       221 l~~~~l~~lP~~i~~~L~~L~~L~l~~~~l~~lP  254 (257)
                      +++|.+..+|..+ +.+++|++|++++|.+..+|
T Consensus       308 Ls~N~l~~i~~~~-~~l~~L~~L~L~~N~l~~~~  340 (597)
T 3oja_B          308 LSHNHLLHVERNQ-PQFDRLENLYLDHNSIVTLK  340 (597)
T ss_dssp             CCSSCCCCCGGGH-HHHTTCSEEECCSSCCCCCC
T ss_pred             CCCCCCCccCccc-ccCCCCCEEECCCCCCCCcC
Confidence            9999998999988 88999999999999877665

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=98.86  E-value=2.4e-09  Score=90.94  Aligned_cols=109  Identities=16%  Similarity=0.109  Sum_probs=78.6

Q ss_pred             CcEEEEEEeC-CCCc--c-ccccCCCCCccEEEeecCCCCCCCcccchHhhccCcccceEEEeCCCCc-cCchhcCCCCC
Q 037304          141 ENVKRFTAHG-NLND--F-AFLDHFDSFLHSLLHLTSGSHYLNPTYCEKICKMFKFLRVLDLGSLVLI-RYPFEIENLFL  215 (257)
Q Consensus       141 ~~~r~L~~~~-~~~~--~-~~~~~~~~~Lrsl~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~l~-~lp~~i~~L~~  215 (257)
                      ..++.|.+.+ +...  . .....++ +|+.|.+.++...    ...+..|.++++|++|++++|.+. .+|..++.+++
T Consensus        76 ~~L~~L~L~~~n~l~~~~p~~l~~l~-~L~~L~Ls~n~l~----~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~  150 (313)
T 1ogq_A           76 PYLNFLYIGGINNLVGPIPPAIAKLT-QLHYLYITHTNVS----GAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPN  150 (313)
T ss_dssp             TTCSEEEEEEETTEESCCCGGGGGCT-TCSEEEEEEECCE----EECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTT
T ss_pred             CCCCeeeCCCCCcccccCChhHhcCC-CCCEEECcCCeeC----CcCCHHHhCCCCCCEEeCCCCccCCcCChHHhcCCC
Confidence            6677777773 4332  2 2455677 8888888777652    345667788888888888888877 67778888888


Q ss_pred             CcEEEccCCCcc-ccchhHHhcCc-cccEeeccCCCCC-cCCC
Q 037304          216 LRYLHLNIPSLK-SLPSSLLNSLL-NLYTLDKPFSYID-HTVD  255 (257)
Q Consensus       216 L~~L~l~~~~l~-~lP~~i~~~L~-~L~~L~l~~~~l~-~lP~  255 (257)
                      |++|++++|.+. .+|..+ +++. +|++|++++|.+. .+|.
T Consensus       151 L~~L~L~~N~l~~~~p~~l-~~l~~~L~~L~L~~N~l~~~~~~  192 (313)
T 1ogq_A          151 LVGITFDGNRISGAIPDSY-GSFSKLFTSMTISRNRLTGKIPP  192 (313)
T ss_dssp             CCEEECCSSCCEEECCGGG-GCCCTTCCEEECCSSEEEEECCG
T ss_pred             CCeEECcCCcccCcCCHHH-hhhhhcCcEEECcCCeeeccCCh
Confidence            888888888877 778887 7777 7888888887755 4443

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=98.86  E-value=5.2e-09  Score=85.14  Aligned_cols=109  Identities=10%  Similarity=0.077  Sum_probs=89.8

Q ss_pred             CcEEEEEEeCCCCcc-c--cccCCCCCccEEEeecCC-CCCCCcccchHhhccCcccceEEEeC-CCCccCc-hhcCCCC
Q 037304          141 ENVKRFTAHGNLNDF-A--FLDHFDSFLHSLLHLTSG-SHYLNPTYCEKICKMFKFLRVLDLGS-LVLIRYP-FEIENLF  214 (257)
Q Consensus       141 ~~~r~L~~~~~~~~~-~--~~~~~~~~Lrsl~l~~~~-~~~~~~~~~~~~~~~l~~Lr~L~L~~-~~l~~lp-~~i~~L~  214 (257)
                      ..++.|.+..+.... +  ....++ +|++|.+.++. ..    .+.+..|.++++|+.|++++ |.++.+| ..+..++
T Consensus        31 ~~l~~L~l~~n~l~~i~~~~~~~l~-~L~~L~l~~n~~l~----~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~  105 (239)
T 2xwt_C           31 PSTQTLKLIETHLRTIPSHAFSNLP-NISRIYVSIDVTLQ----QLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELP  105 (239)
T ss_dssp             TTCCEEEEESCCCSEECTTTTTTCT-TCCEEEEECCSSCC----EECTTTEESCTTCCEEEEEEETTCCEECTTSEECCT
T ss_pred             CcccEEEEeCCcceEECHHHccCCC-CCcEEeCCCCCCcc----eeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCC
Confidence            578888888887654 2  355778 99999999886 42    45566889999999999998 8899886 5788999


Q ss_pred             CCcEEEccCCCccccchhHHhcCcccc---EeeccCC-CCCcCCCC
Q 037304          215 LLRYLHLNIPSLKSLPSSLLNSLLNLY---TLDKPFS-YIDHTVDE  256 (257)
Q Consensus       215 ~L~~L~l~~~~l~~lP~~i~~~L~~L~---~L~l~~~-~l~~lP~~  256 (257)
                      +|++|++++|.++.+|. + +.+.+|+   +|++++| .+..+|..
T Consensus       106 ~L~~L~l~~n~l~~lp~-~-~~l~~L~~L~~L~l~~N~~l~~i~~~  149 (239)
T 2xwt_C          106 LLKFLGIFNTGLKMFPD-L-TKVYSTDIFFILEITDNPYMTSIPVN  149 (239)
T ss_dssp             TCCEEEEEEECCCSCCC-C-TTCCBCCSEEEEEEESCTTCCEECTT
T ss_pred             CCCEEeCCCCCCccccc-c-ccccccccccEEECCCCcchhhcCcc
Confidence            99999999999999998 6 8888888   9999999 78877753

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=98.86  E-value=7.7e-09  Score=80.01  Aligned_cols=85  Identities=16%  Similarity=0.065  Sum_probs=69.1

Q ss_pred             ccEEEeecCCCCCCCcccchHhhccCcccceEEEeCCCCccC-chhcCCCCCCcEEEccCCCccccchhHHhcCccccEe
Q 037304          165 LHSLLHLTSGSHYLNPTYCEKICKMFKFLRVLDLGSLVLIRY-PFEIENLFLLRYLHLNIPSLKSLPSSLLNSLLNLYTL  243 (257)
Q Consensus       165 Lrsl~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~l~~l-p~~i~~L~~L~~L~l~~~~l~~lP~~i~~~L~~L~~L  243 (257)
                      .+++.+.++....    + |..+  .+.|+.|+|++|.++.+ |..++.+++|++|+|++|.++.+|..+|..+++|++|
T Consensus        11 ~~~l~~s~n~l~~----i-p~~~--~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L   83 (170)
T 3g39_A           11 GTTVDCSGKSLAS----V-PTGI--PTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQL   83 (170)
T ss_dssp             TTEEECTTSCCSS----C-CSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred             CCEEEeCCCCcCc----c-CccC--CCCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEE
Confidence            3456666655431    2 2222  37899999999999988 6779999999999999999999999876899999999


Q ss_pred             eccCCCCCcCCCC
Q 037304          244 DKPFSYIDHTVDE  256 (257)
Q Consensus       244 ~l~~~~l~~lP~~  256 (257)
                      +|++|++..+|++
T Consensus        84 ~L~~N~l~~~~~~   96 (170)
T 3g39_A           84 SLNDNQLKSIPRG   96 (170)
T ss_dssp             ECCSSCCCCCCTT
T ss_pred             ECCCCccCEeCHH
Confidence            9999999988864

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=98.86  E-value=5.4e-09  Score=93.13  Aligned_cols=102  Identities=23%  Similarity=0.160  Sum_probs=52.0

Q ss_pred             CcEEEEEEeCCCCcc---ccccCCCCCccEEEeecCCCCCCCcccchHhhccCcccceEEEeCCCCccCch-hcCCCCCC
Q 037304          141 ENVKRFTAHGNLNDF---AFLDHFDSFLHSLLHLTSGSHYLNPTYCEKICKMFKFLRVLDLGSLVLIRYPF-EIENLFLL  216 (257)
Q Consensus       141 ~~~r~L~~~~~~~~~---~~~~~~~~~Lrsl~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~l~~lp~-~i~~L~~L  216 (257)
                      ..++.|.+..+....   .....++ +|+.|.+.++...    ...+..|.++++|+.|+|++|.+..+|. .++.+++|
T Consensus        75 ~~l~~L~L~~n~i~~~~~~~~~~l~-~L~~L~Ls~n~i~----~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L  149 (452)
T 3zyi_A           75 SNTRYLNLMENNIQMIQADTFRHLH-HLEVLQLGRNSIR----QIEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKL  149 (452)
T ss_dssp             TTCSEEECCSSCCCEECTTTTTTCT-TCCEEECCSSCCC----EECTTTTTTCTTCCEEECCSSCCSBCCTTTSSSCTTC
T ss_pred             CCccEEECcCCcCceECHHHcCCCC-CCCEEECCCCccC----CcChhhccCcccCCEEECCCCcCCccChhhhcccCCC
Confidence            445566665554432   2234455 6666666655432    3344555556666666666666555543 25555556


Q ss_pred             cEEEccCCCccccchhHHhcCccccEeeccC
Q 037304          217 RYLHLNIPSLKSLPSSLLNSLLNLYTLDKPF  247 (257)
Q Consensus       217 ~~L~l~~~~l~~lP~~i~~~L~~L~~L~l~~  247 (257)
                      ++|++++|.++.+|...|.++++|++|++++
T Consensus       150 ~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~  180 (452)
T 3zyi_A          150 RELWLRNNPIESIPSYAFNRVPSLMRLDLGE  180 (452)
T ss_dssp             CEEECCSCCCCEECTTTTTTCTTCCEEECCC
T ss_pred             CEEECCCCCcceeCHhHHhcCCcccEEeCCC
Confidence            6666655555555443224444444444433

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=98.85  E-value=4.7e-09  Score=95.77  Aligned_cols=109  Identities=17%  Similarity=0.050  Sum_probs=80.1

Q ss_pred             CcEEEEEEeCCCCcc---ccccCCCCCccEEEeecCCCCCCCcccchHhhccCcccceEEEeCCCCccCc-hhcCCCCCC
Q 037304          141 ENVKRFTAHGNLNDF---AFLDHFDSFLHSLLHLTSGSHYLNPTYCEKICKMFKFLRVLDLGSLVLIRYP-FEIENLFLL  216 (257)
Q Consensus       141 ~~~r~L~~~~~~~~~---~~~~~~~~~Lrsl~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~l~~lp-~~i~~L~~L  216 (257)
                      ..+++|.+..+....   .....++ +|++|.+.++...    ...+..|.++++|++|++++|.+..+| ..++.+++|
T Consensus        28 ~~l~~L~Ls~n~l~~~~~~~~~~l~-~L~~L~Ls~n~i~----~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L  102 (570)
T 2z63_A           28 FSTKNLDLSFNPLRHLGSYSFFSFP-ELQVLDLSRCEIQ----TIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSL  102 (570)
T ss_dssp             SSCCEEECCSCCCCEECTTTTTTCS-SCCEEECTTCCCC----EECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTC
T ss_pred             ccccEEEccCCccCccChhHhhCCC-CceEEECCCCcCC----ccCcccccCchhCCEEeCcCCcCCccCHhhhcCcccc
Confidence            567777777766543   2445677 8888888777543    455667788888888888888877664 678888888


Q ss_pred             cEEEccCCCccccch-hHHhcCccccEeeccCCCCCc--CCC
Q 037304          217 RYLHLNIPSLKSLPS-SLLNSLLNLYTLDKPFSYIDH--TVD  255 (257)
Q Consensus       217 ~~L~l~~~~l~~lP~-~i~~~L~~L~~L~l~~~~l~~--lP~  255 (257)
                      ++|++++|.++.+|. .+ +++++|++|++++|.+..  +|.
T Consensus       103 ~~L~L~~n~l~~l~~~~~-~~l~~L~~L~L~~n~l~~~~lp~  143 (570)
T 2z63_A          103 QKLVAVETNLASLENFPI-GHLKTLKELNVAHNLIQSFKLPE  143 (570)
T ss_dssp             CEEECTTSCCCCSTTCSC-TTCTTCCEEECCSSCCCCCCCCG
T ss_pred             ccccccccccccCCCccc-cccccccEEecCCCccceecChh
Confidence            888888888887776 45 888888888888887664  454

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=98.85  E-value=6.3e-09  Score=96.01  Aligned_cols=109  Identities=14%  Similarity=0.063  Sum_probs=63.9

Q ss_pred             CcEEEEEEeCCCCcc---ccccCCCCCccEEEeecCCCCCCCcccchHhhccCcccceEEEeCCCCccCchh-cCCCCCC
Q 037304          141 ENVKRFTAHGNLNDF---AFLDHFDSFLHSLLHLTSGSHYLNPTYCEKICKMFKFLRVLDLGSLVLIRYPFE-IENLFLL  216 (257)
Q Consensus       141 ~~~r~L~~~~~~~~~---~~~~~~~~~Lrsl~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~l~~lp~~-i~~L~~L  216 (257)
                      ..++.|.+..+....   .....++ +|+.|.+.++...    ..++..|.++++|++|+|++|.+..+|.. ++.+++|
T Consensus        75 ~~L~~L~L~~n~l~~~~~~~~~~l~-~L~~L~L~~n~l~----~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L  149 (597)
T 3oja_B           75 RQVELLNLNDLQIEEIDTYAFAYAH-TIQKLYMGFNAIR----YLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKL  149 (597)
T ss_dssp             CCCSEEECTTSCCCEECTTTTTTCT-TCCEEECCSSCCC----CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTC
T ss_pred             CCCcEEECCCCCCCCCChHHhcCCC-CCCEEECCCCcCC----CCCHHHHcCCCCCCEEEeeCCCCCCCCHHHhccCCCC
Confidence            345555555544332   1334555 6666666655532    34455566667777777777766666654 3666777


Q ss_pred             cEEEccCCCccccchhHHhcCccccEeeccCCCCCcCC
Q 037304          217 RYLHLNIPSLKSLPSSLLNSLLNLYTLDKPFSYIDHTV  254 (257)
Q Consensus       217 ~~L~l~~~~l~~lP~~i~~~L~~L~~L~l~~~~l~~lP  254 (257)
                      ++|++++|.+..+|+..|+++++|++|++++|.+..+|
T Consensus       150 ~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~  187 (597)
T 3oja_B          150 TTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVD  187 (597)
T ss_dssp             CEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSBCC
T ss_pred             CEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCCcC
Confidence            77777776666555432266677777777766655443

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=98.84  E-value=6.6e-09  Score=92.25  Aligned_cols=106  Identities=16%  Similarity=0.045  Sum_probs=46.9

Q ss_pred             CcEEEEEEeCCCCcc---ccccCCCCCccEEEeecCCCCCCCcccchHhhccCcccceEEEeCCCCccC-chhcCCCCCC
Q 037304          141 ENVKRFTAHGNLNDF---AFLDHFDSFLHSLLHLTSGSHYLNPTYCEKICKMFKFLRVLDLGSLVLIRY-PFEIENLFLL  216 (257)
Q Consensus       141 ~~~r~L~~~~~~~~~---~~~~~~~~~Lrsl~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~l~~l-p~~i~~L~~L  216 (257)
                      ..+++|.+..+....   .....++ +|+.|.+.++..   ...+.+..|.++++|++|++++|.+..+ |..++++++|
T Consensus        30 ~~l~~L~Ls~n~i~~~~~~~~~~l~-~L~~L~L~~n~~---~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L  105 (455)
T 3v47_A           30 AHVNYVDLSLNSIAELNETSFSRLQ-DLQFLKVEQQTP---GLVIRNNTFRGLSSLIILKLDYNQFLQLETGAFNGLANL  105 (455)
T ss_dssp             TTCCEEECCSSCCCEECTTTTSSCT-TCCEEECCCCST---TCEECTTTTTTCTTCCEEECTTCTTCEECTTTTTTCTTC
T ss_pred             CccCEEEecCCccCcCChhHhccCc-cccEEECcCCcc---cceECcccccccccCCEEeCCCCccCccChhhccCcccC
Confidence            344555555444332   1233444 555555554433   1122234444455555555555554433 4444445555


Q ss_pred             cEEEccCCCccc-cchh--HHhcCccccEeeccCCCCC
Q 037304          217 RYLHLNIPSLKS-LPSS--LLNSLLNLYTLDKPFSYID  251 (257)
Q Consensus       217 ~~L~l~~~~l~~-lP~~--i~~~L~~L~~L~l~~~~l~  251 (257)
                      ++|++++|.++. +|..  + +++++|++|++++|.+.
T Consensus       106 ~~L~L~~n~l~~~~~~~~~~-~~l~~L~~L~L~~n~l~  142 (455)
T 3v47_A          106 EVLTLTQCNLDGAVLSGNFF-KPLTSLEMLVLRDNNIK  142 (455)
T ss_dssp             CEEECTTSCCBTHHHHSSTT-TTCTTCCEEECCSSBCC
T ss_pred             CEEeCCCCCCCccccCcccc-cCcccCCEEECCCCccC
Confidence            555555444442 2222  3 44444444444444443

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=98.84  E-value=9e-09  Score=91.39  Aligned_cols=102  Identities=23%  Similarity=0.167  Sum_probs=53.2

Q ss_pred             CcEEEEEEeCCCCcc---ccccCCCCCccEEEeecCCCCCCCcccchHhhccCcccceEEEeCCCCccCch-hcCCCCCC
Q 037304          141 ENVKRFTAHGNLNDF---AFLDHFDSFLHSLLHLTSGSHYLNPTYCEKICKMFKFLRVLDLGSLVLIRYPF-EIENLFLL  216 (257)
Q Consensus       141 ~~~r~L~~~~~~~~~---~~~~~~~~~Lrsl~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~l~~lp~-~i~~L~~L  216 (257)
                      ..++.|.+..+....   .....++ +|+.|.+.++...    .+.+..|.++++|+.|+|++|.++.+|. .+..+++|
T Consensus        64 ~~l~~L~L~~n~i~~~~~~~~~~l~-~L~~L~Ls~n~i~----~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L  138 (440)
T 3zyj_A           64 TNTRLLNLHENQIQIIKVNSFKHLR-HLEILQLSRNHIR----TIEIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKL  138 (440)
T ss_dssp             TTCSEEECCSCCCCEECTTTTSSCS-SCCEEECCSSCCC----EECGGGGTTCSSCCEEECCSSCCSSCCTTTSCSCSSC
T ss_pred             CCCcEEEccCCcCCeeCHHHhhCCC-CCCEEECCCCcCC----ccChhhccCCccCCEEECCCCcCCeeCHhHhhccccC
Confidence            445556665555432   2334455 6666666655432    3344555666666666666666655543 45556666


Q ss_pred             cEEEccCCCccccchhHHhcCccccEeeccC
Q 037304          217 RYLHLNIPSLKSLPSSLLNSLLNLYTLDKPF  247 (257)
Q Consensus       217 ~~L~l~~~~l~~lP~~i~~~L~~L~~L~l~~  247 (257)
                      ++|++++|.++.+|...|.++++|++|++++
T Consensus       139 ~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~  169 (440)
T 3zyj_A          139 KELWLRNNPIESIPSYAFNRIPSLRRLDLGE  169 (440)
T ss_dssp             CEEECCSCCCCEECTTTTTTCTTCCEEECCC
T ss_pred             ceeeCCCCcccccCHHHhhhCcccCEeCCCC
Confidence            6666666555555442224444444444433

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=98.84  E-value=1.1e-08  Score=86.64  Aligned_cols=104  Identities=17%  Similarity=0.132  Sum_probs=79.9

Q ss_pred             CcEEEEEEeCCCCcc-ccccCCCCCccEEEeecCCCCCCCcccchHhhccCcccceEEEeCCCCccCchhcCCCCCCcEE
Q 037304          141 ENVKRFTAHGNLNDF-AFLDHFDSFLHSLLHLTSGSHYLNPTYCEKICKMFKFLRVLDLGSLVLIRYPFEIENLFLLRYL  219 (257)
Q Consensus       141 ~~~r~L~~~~~~~~~-~~~~~~~~~Lrsl~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~l~~lp~~i~~L~~L~~L  219 (257)
                      ..++.|.+..+.... +....++ +|+.|.+.++....     . ..+..+++|+.|++++|.+..+|. ++.+++|++|
T Consensus        63 ~~L~~L~L~~n~i~~~~~~~~l~-~L~~L~L~~n~l~~-----~-~~~~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L  134 (308)
T 1h6u_A           63 NNLIGLELKDNQITDLAPLKNLT-KITELELSGNPLKN-----V-SAIAGLQSIKTLDLTSTQITDVTP-LAGLSNLQVL  134 (308)
T ss_dssp             TTCCEEECCSSCCCCCGGGTTCC-SCCEEECCSCCCSC-----C-GGGTTCTTCCEEECTTSCCCCCGG-GTTCTTCCEE
T ss_pred             CCCCEEEccCCcCCCChhHccCC-CCCEEEccCCcCCC-----c-hhhcCCCCCCEEECCCCCCCCchh-hcCCCCCCEE
Confidence            677778777766543 3466677 88888888776542     1 357788888888888888887765 8888888888


Q ss_pred             EccCCCccccchhHHhcCccccEeeccCCCCCcCC
Q 037304          220 HLNIPSLKSLPSSLLNSLLNLYTLDKPFSYIDHTV  254 (257)
Q Consensus       220 ~l~~~~l~~lP~~i~~~L~~L~~L~l~~~~l~~lP  254 (257)
                      ++++|.++.+|. + +.+++|++|++++|.+..+|
T Consensus       135 ~l~~n~l~~~~~-l-~~l~~L~~L~l~~n~l~~~~  167 (308)
T 1h6u_A          135 YLDLNQITNISP-L-AGLTNLQYLSIGNAQVSDLT  167 (308)
T ss_dssp             ECCSSCCCCCGG-G-GGCTTCCEEECCSSCCCCCG
T ss_pred             ECCCCccCcCcc-c-cCCCCccEEEccCCcCCCCh
Confidence            888888888876 6 88888999999888877665

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=98.82  E-value=8.1e-09  Score=93.08  Aligned_cols=109  Identities=11%  Similarity=-0.106  Sum_probs=75.9

Q ss_pred             CcEEEEEEeCCCCcc---ccccCCCCCccEEEeecCCCCCCCcccchHhh-ccCcccceEEEeCCCCccCchhcCCCCCC
Q 037304          141 ENVKRFTAHGNLNDF---AFLDHFDSFLHSLLHLTSGSHYLNPTYCEKIC-KMFKFLRVLDLGSLVLIRYPFEIENLFLL  216 (257)
Q Consensus       141 ~~~r~L~~~~~~~~~---~~~~~~~~~Lrsl~l~~~~~~~~~~~~~~~~~-~~l~~Lr~L~L~~~~l~~lp~~i~~L~~L  216 (257)
                      ..++.|.+..+....   .....++ +|+.|.+.++...    ...+..+ ..+++|+.|+|++|.+..+|. ...+++|
T Consensus       120 ~~L~~L~L~~N~l~~~~~~~~~~l~-~L~~L~Ls~N~l~----~~~~~~l~~~l~~L~~L~Ls~N~l~~~~~-~~~l~~L  193 (487)
T 3oja_A          120 QGKKNIYLANNKITMLRDLDEGCRS-RVQYLDLKLNEID----TVNFAELAASSDTLEHLNLQYNFIYDVKG-QVVFAKL  193 (487)
T ss_dssp             SSCEEEECCSSCCCSGGGBCGGGGS-SEEEEECTTSCCC----EEEGGGGGGGTTTCCEEECTTSCCCEEEC-CCCCTTC
T ss_pred             CCCCEEECCCCCCCCCCchhhcCCC-CCCEEECCCCCCC----CcChHHHhhhCCcccEEecCCCccccccc-cccCCCC
Confidence            456677776665442   2334566 7778777777653    2334444 367888888888888776654 3357888


Q ss_pred             cEEEccCCCccccchhHHhcCccccEeeccCCCCCcCCCC
Q 037304          217 RYLHLNIPSLKSLPSSLLNSLLNLYTLDKPFSYIDHTVDE  256 (257)
Q Consensus       217 ~~L~l~~~~l~~lP~~i~~~L~~L~~L~l~~~~l~~lP~~  256 (257)
                      ++|++++|.++.+|+++ +.+++|++|++++|.+..+|..
T Consensus       194 ~~L~Ls~N~l~~~~~~~-~~l~~L~~L~Ls~N~l~~lp~~  232 (487)
T 3oja_A          194 KTLDLSSNKLAFMGPEF-QSAAGVTWISLRNNKLVLIEKA  232 (487)
T ss_dssp             CEEECCSSCCCEECGGG-GGGTTCSEEECTTSCCCEECTT
T ss_pred             CEEECCCCCCCCCCHhH-cCCCCccEEEecCCcCcccchh
Confidence            88888888888888887 8888888888888887777754

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=98.82  E-value=3.4e-09  Score=90.54  Aligned_cols=87  Identities=21%  Similarity=0.070  Sum_probs=70.2

Q ss_pred             CccEEEeecCCCCCCCcccchHhhccCcccceEEEeCCCCccCc-hhcCCCCCCcEEEccCCCccccchhHHhcCccccE
Q 037304          164 FLHSLLHLTSGSHYLNPTYCEKICKMFKFLRVLDLGSLVLIRYP-FEIENLFLLRYLHLNIPSLKSLPSSLLNSLLNLYT  242 (257)
Q Consensus       164 ~Lrsl~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~l~~lp-~~i~~L~~L~~L~l~~~~l~~lP~~i~~~L~~L~~  242 (257)
                      +|+.|.+.++...    ...+..+..+++|+.|++++|.+..++ ..++.+++|++|++++|.++.+|..+ +.+++|++
T Consensus       194 ~L~~L~l~~n~i~----~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~lp~~l-~~l~~L~~  268 (332)
T 2ft3_A          194 TLNELHLDHNKIQ----AIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLSRVPAGL-PDLKLLQV  268 (332)
T ss_dssp             SCSCCBCCSSCCC----CCCTTSSTTCTTCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSSCCCBCCTTG-GGCTTCCE
T ss_pred             CCCEEECCCCcCC----ccCHHHhcCCCCCCEEECCCCcCCcCChhHhhCCCCCCEEECCCCcCeecChhh-hcCccCCE
Confidence            5666666655442    344567888899999999999988775 47888999999999999999999998 99999999


Q ss_pred             eeccCCCCCcCCC
Q 037304          243 LDKPFSYIDHTVD  255 (257)
Q Consensus       243 L~l~~~~l~~lP~  255 (257)
                      |++++|.+..+|.
T Consensus       269 L~l~~N~l~~~~~  281 (332)
T 2ft3_A          269 VYLHTNNITKVGV  281 (332)
T ss_dssp             EECCSSCCCBCCT
T ss_pred             EECCCCCCCccCh
Confidence            9999998887764

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=98.82  E-value=1.7e-08  Score=85.56  Aligned_cols=104  Identities=17%  Similarity=0.136  Sum_probs=86.5

Q ss_pred             CcEEEEEEeCCCCcc-ccccCCCCCccEEEeecCCCCCCCcccchHhhccCcccceEEEeCCCCccCchhcCCCCCCcEE
Q 037304          141 ENVKRFTAHGNLNDF-AFLDHFDSFLHSLLHLTSGSHYLNPTYCEKICKMFKFLRVLDLGSLVLIRYPFEIENLFLLRYL  219 (257)
Q Consensus       141 ~~~r~L~~~~~~~~~-~~~~~~~~~Lrsl~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~l~~lp~~i~~L~~L~~L  219 (257)
                      ..++.|.+..+.... +....++ +|+.|.+.++....    . + .+..+++|+.|++++|.+..+|. ++.+++|++|
T Consensus        85 ~~L~~L~L~~n~l~~~~~~~~l~-~L~~L~l~~n~l~~----~-~-~l~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L  156 (308)
T 1h6u_A           85 TKITELELSGNPLKNVSAIAGLQ-SIKTLDLTSTQITD----V-T-PLAGLSNLQVLYLDLNQITNISP-LAGLTNLQYL  156 (308)
T ss_dssp             CSCCEEECCSCCCSCCGGGTTCT-TCCEEECTTSCCCC----C-G-GGTTCTTCCEEECCSSCCCCCGG-GGGCTTCCEE
T ss_pred             CCCCEEEccCCcCCCchhhcCCC-CCCEEECCCCCCCC----c-h-hhcCCCCCCEEECCCCccCcCcc-ccCCCCccEE
Confidence            678888888876553 5566778 99999998887642    2 2 38899999999999999988876 8889999999


Q ss_pred             EccCCCccccchhHHhcCccccEeeccCCCCCcCC
Q 037304          220 HLNIPSLKSLPSSLLNSLLNLYTLDKPFSYIDHTV  254 (257)
Q Consensus       220 ~l~~~~l~~lP~~i~~~L~~L~~L~l~~~~l~~lP  254 (257)
                      ++++|.++.+|. + +++++|+.|++++|.+..+|
T Consensus       157 ~l~~n~l~~~~~-l-~~l~~L~~L~l~~n~l~~~~  189 (308)
T 1h6u_A          157 SIGNAQVSDLTP-L-ANLSKLTTLKADDNKISDIS  189 (308)
T ss_dssp             ECCSSCCCCCGG-G-TTCTTCCEEECCSSCCCCCG
T ss_pred             EccCCcCCCChh-h-cCCCCCCEEECCCCccCcCh
Confidence            999999998888 6 89999999999999887765

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=98.81  E-value=5e-09  Score=89.96  Aligned_cols=91  Identities=18%  Similarity=0.011  Sum_probs=71.0

Q ss_pred             cccccCCCCCccEEEeec-CCCCCCCcccchHhhccCcccceEEEeCCCCccCc-hhcCCCCCCcEEEccCCCccccchh
Q 037304          155 FAFLDHFDSFLHSLLHLT-SGSHYLNPTYCEKICKMFKFLRVLDLGSLVLIRYP-FEIENLFLLRYLHLNIPSLKSLPSS  232 (257)
Q Consensus       155 ~~~~~~~~~~Lrsl~l~~-~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~l~~lp-~~i~~L~~L~~L~l~~~~l~~lP~~  232 (257)
                      +|....+. +|+.|.+.+ +..    ..+.+..|.++++|+.|+|++|.+..+| ..+++|++|++|+|++|.+..+|..
T Consensus        24 ip~l~~~~-~L~~L~l~~~n~l----~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~   98 (347)
T 2ifg_A           24 LHHLPGAE-NLTELYIENQQHL----QHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNALESLSWK   98 (347)
T ss_dssp             TTTSCSCS-CCSEEECCSCSSC----CEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSSCCSCCCST
T ss_pred             cCCCCCCC-CeeEEEccCCCCC----CCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCCccceeCHH
Confidence            34455566 788998875 654    3566678889999999999999988765 5678899999999999999999888


Q ss_pred             HHhcCccccEeeccCCCCC
Q 037304          233 LLNSLLNLYTLDKPFSYID  251 (257)
Q Consensus       233 i~~~L~~L~~L~l~~~~l~  251 (257)
                      +|..+ .|+.|+|.+|.+.
T Consensus        99 ~~~~~-~L~~l~l~~N~~~  116 (347)
T 2ifg_A           99 TVQGL-SLQELVLSGNPLH  116 (347)
T ss_dssp             TTCSC-CCCEEECCSSCCC
T ss_pred             HcccC-CceEEEeeCCCcc
Confidence            73444 4999999888764

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=98.81  E-value=1.7e-08  Score=84.81  Aligned_cols=103  Identities=19%  Similarity=0.092  Sum_probs=44.9

Q ss_pred             CcEEEEEEeCCCCcc-ccccCCCCCccEEEeecCCCCCCCcccchHhhccCcccceEEEeCCCCccCchhcCCCCCCcEE
Q 037304          141 ENVKRFTAHGNLNDF-AFLDHFDSFLHSLLHLTSGSHYLNPTYCEKICKMFKFLRVLDLGSLVLIRYPFEIENLFLLRYL  219 (257)
Q Consensus       141 ~~~r~L~~~~~~~~~-~~~~~~~~~Lrsl~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~l~~lp~~i~~L~~L~~L  219 (257)
                      ..++.|.+..+.... +....++ +|+.|.+.++....    .  ..+..+++|+.|++++|.+..+ ..++.+++|++|
T Consensus        90 ~~L~~L~l~~n~l~~~~~l~~l~-~L~~L~L~~n~i~~----~--~~l~~l~~L~~L~l~~n~l~~~-~~l~~l~~L~~L  161 (291)
T 1h6t_A           90 KNLGWLFLDENKVKDLSSLKDLK-KLKSLSLEHNGISD----I--NGLVHLPQLESLYLGNNKITDI-TVLSRLTKLDTL  161 (291)
T ss_dssp             TTCCEEECCSSCCCCGGGGTTCT-TCCEEECTTSCCCC----C--GGGGGCTTCCEEECCSSCCCCC-GGGGGCTTCSEE
T ss_pred             CCCCEEECCCCcCCCChhhccCC-CCCEEECCCCcCCC----C--hhhcCCCCCCEEEccCCcCCcc-hhhccCCCCCEE
Confidence            344444444443322 2333444 55555544443321    1  2334444444444444444443 234444444444


Q ss_pred             EccCCCccccchhHHhcCccccEeeccCCCCCcC
Q 037304          220 HLNIPSLKSLPSSLLNSLLNLYTLDKPFSYIDHT  253 (257)
Q Consensus       220 ~l~~~~l~~lP~~i~~~L~~L~~L~l~~~~l~~l  253 (257)
                      ++++|.++.+|. + +.+++|++|++++|.+..+
T Consensus       162 ~L~~N~l~~~~~-l-~~l~~L~~L~L~~N~i~~l  193 (291)
T 1h6t_A          162 SLEDNQISDIVP-L-AGLTKLQNLYLSKNHISDL  193 (291)
T ss_dssp             ECCSSCCCCCGG-G-TTCTTCCEEECCSSCCCBC
T ss_pred             EccCCccccchh-h-cCCCccCEEECCCCcCCCC
Confidence            444444444443 3 4444444444444444333

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=98.81  E-value=8.1e-09  Score=93.39  Aligned_cols=103  Identities=14%  Similarity=0.113  Sum_probs=85.9

Q ss_pred             CcEEEEEEeCCCCcc---ccccCCCCCccEEEeecCCCCCCCcccchHhhccCcccceEEEeCCCCccCchhcCCCCCCc
Q 037304          141 ENVKRFTAHGNLNDF---AFLDHFDSFLHSLLHLTSGSHYLNPTYCEKICKMFKFLRVLDLGSLVLIRYPFEIENLFLLR  217 (257)
Q Consensus       141 ~~~r~L~~~~~~~~~---~~~~~~~~~Lrsl~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~l~~lp~~i~~L~~L~  217 (257)
                      ..+++|.+..+....   .....++ +|++|.+.++...    ...+..|.++++|++|++++|.++.+|..  .+++|+
T Consensus        21 ~~L~~L~Ls~n~i~~~~~~~~~~l~-~L~~L~Ls~n~l~----~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~--~l~~L~   93 (520)
T 2z7x_B           21 QKTTILNISQNYISELWTSDILSLS-KLRILIISHNRIQ----YLDISVFKFNQELEYLDLSHNKLVKISCH--PTVNLK   93 (520)
T ss_dssp             TTCSEEECCSSCCCCCCHHHHTTCT-TCCEEECCSSCCC----EEEGGGGTTCTTCCEEECCSSCCCEEECC--CCCCCS
T ss_pred             ccccEEECCCCcccccChhhccccc-cccEEecCCCccC----CcChHHhhcccCCCEEecCCCceeecCcc--ccCCcc
Confidence            678888888877553   2456788 9999999988753    46678899999999999999999988877  899999


Q ss_pred             EEEccCCCccc--cchhHHhcCccccEeeccCCCCC
Q 037304          218 YLHLNIPSLKS--LPSSLLNSLLNLYTLDKPFSYID  251 (257)
Q Consensus       218 ~L~l~~~~l~~--lP~~i~~~L~~L~~L~l~~~~l~  251 (257)
                      +|++++|.++.  +|..+ +++++|++|++++|.+.
T Consensus        94 ~L~L~~N~l~~~~~p~~~-~~l~~L~~L~L~~n~l~  128 (520)
T 2z7x_B           94 HLDLSFNAFDALPICKEF-GNMSQLKFLGLSTTHLE  128 (520)
T ss_dssp             EEECCSSCCSSCCCCGGG-GGCTTCCEEEEEESSCC
T ss_pred             EEeccCCccccccchhhh-ccCCcceEEEecCcccc
Confidence            99999999875  57888 99999999999998764

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=98.80  E-value=6.9e-09  Score=94.33  Aligned_cols=108  Identities=21%  Similarity=0.112  Sum_probs=61.0

Q ss_pred             CcEEEEEEeCCCCcc---ccccCCCCCccEEEeecCCCCCCCcccchHhhccCcccceEEEeCCCCccCchh-cCCCCCC
Q 037304          141 ENVKRFTAHGNLNDF---AFLDHFDSFLHSLLHLTSGSHYLNPTYCEKICKMFKFLRVLDLGSLVLIRYPFE-IENLFLL  216 (257)
Q Consensus       141 ~~~r~L~~~~~~~~~---~~~~~~~~~Lrsl~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~l~~lp~~-i~~L~~L  216 (257)
                      ..+++|.+..+....   .....++ +|++|.+.++...    ...+..|.++++|++|++++|.+..+|.. ++++++|
T Consensus        26 ~~L~~L~Ls~n~l~~~~~~~~~~l~-~L~~L~Ls~n~i~----~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L  100 (549)
T 2z81_A           26 AAMKSLDLSFNKITYIGHGDLRACA-NLQVLILKSSRIN----TIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSL  100 (549)
T ss_dssp             TTCCEEECCSSCCCEECSSTTSSCT-TCCEEECTTSCCC----EECTTTTTTCTTCCEEECTTSCCCSCCHHHHTTCTTC
T ss_pred             CCccEEECcCCccCccChhhhhcCC-cccEEECCCCCcC----ccChhhccccccCCEEECCCCccCccCHHHhccCCCC
Confidence            455666666555432   1234555 6666666665432    34445566666666666666666655433 6666666


Q ss_pred             cEEEccCCCccc--cchhHHhcCccccEeeccCCC-CCcCC
Q 037304          217 RYLHLNIPSLKS--LPSSLLNSLLNLYTLDKPFSY-IDHTV  254 (257)
Q Consensus       217 ~~L~l~~~~l~~--lP~~i~~~L~~L~~L~l~~~~-l~~lP  254 (257)
                      ++|++++|.++.  .|..+ +++++|++|++++|. +..+|
T Consensus       101 ~~L~Ls~n~l~~~~~~~~~-~~l~~L~~L~L~~n~~~~~~~  140 (549)
T 2z81_A          101 KYLNLMGNPYQTLGVTSLF-PNLTNLQTLRIGNVETFSEIR  140 (549)
T ss_dssp             CEEECTTCCCSSSCSSCSC-TTCTTCCEEEEEESSSCCEEC
T ss_pred             cEEECCCCcccccchhhhh-hccCCccEEECCCCccccccC
Confidence            666666666553  34455 666666666666655 44444

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=98.80  E-value=6.7e-09  Score=87.55  Aligned_cols=109  Identities=18%  Similarity=0.196  Sum_probs=72.2

Q ss_pred             CcEEEEEEeCCCCcc---ccccCCCCCccEEEeecCCCCCCCcccchHhhccCcccceEEEeCCCCccC-chhcCCCCCC
Q 037304          141 ENVKRFTAHGNLNDF---AFLDHFDSFLHSLLHLTSGSHYLNPTYCEKICKMFKFLRVLDLGSLVLIRY-PFEIENLFLL  216 (257)
Q Consensus       141 ~~~r~L~~~~~~~~~---~~~~~~~~~Lrsl~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~l~~l-p~~i~~L~~L  216 (257)
                      ..++.|.+..+....   .....++ +|+.|.+.++...   ....+..+..+++|+.|++++|.+..+ |..++.+++|
T Consensus       126 ~~L~~L~l~~n~l~~~~~~~~~~l~-~L~~L~l~~n~l~---~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L  201 (306)
T 2z66_A          126 RNLIYLDISHTHTRVAFNGIFNGLS-SLEVLKMAGNSFQ---ENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSL  201 (306)
T ss_dssp             TTCCEEECTTSCCEECSTTTTTTCT-TCCEEECTTCEEG---GGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTC
T ss_pred             cCCCEEECCCCcCCccchhhcccCc-CCCEEECCCCccc---cccchhHHhhCcCCCEEECCCCCcCCcCHHHhcCCCCC
Confidence            455666665554332   1233455 6777776665431   113456677788888888888887765 5677788888


Q ss_pred             cEEEccCCCccccchhHHhcCccccEeeccCCCCCcC
Q 037304          217 RYLHLNIPSLKSLPSSLLNSLLNLYTLDKPFSYIDHT  253 (257)
Q Consensus       217 ~~L~l~~~~l~~lP~~i~~~L~~L~~L~l~~~~l~~l  253 (257)
                      ++|++++|.+..+|...++.+++|++|++++|.+...
T Consensus       202 ~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~  238 (306)
T 2z66_A          202 QVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTS  238 (306)
T ss_dssp             CEEECTTSCCSBCCSGGGTTCTTCCEEECTTSCCCBC
T ss_pred             CEEECCCCccCccChhhccCcccCCEeECCCCCCccc
Confidence            8888888887777663337788888888888876543

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=98.80  E-value=1.1e-08  Score=88.21  Aligned_cols=88  Identities=19%  Similarity=0.008  Sum_probs=78.2

Q ss_pred             CccEEEeecCCCCCCCcccchHhhccCcccceEEEeCCCCccC-chhcCCCCCCcEEEccCCCccccchhHHhcCccccE
Q 037304          164 FLHSLLHLTSGSHYLNPTYCEKICKMFKFLRVLDLGSLVLIRY-PFEIENLFLLRYLHLNIPSLKSLPSSLLNSLLNLYT  242 (257)
Q Consensus       164 ~Lrsl~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~l~~l-p~~i~~L~~L~~L~l~~~~l~~lP~~i~~~L~~L~~  242 (257)
                      +++.|.+.++...    ...+..|.++++|+.|++++|.+..+ |..++++++|++|++++|.++.+|...|+++++|++
T Consensus        53 ~L~~L~l~~n~i~----~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~  128 (353)
T 2z80_A           53 AVKSLDLSNNRIT----YISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTF  128 (353)
T ss_dssp             TCCEEECTTSCCC----EECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSSCCHHHHTTCTTCSE
T ss_pred             cCcEEECCCCcCc----ccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCCcCCcCCHhHhCCCccCCE
Confidence            8999999888754    45556899999999999999999977 567999999999999999999999884499999999


Q ss_pred             eeccCCCCCcCCC
Q 037304          243 LDKPFSYIDHTVD  255 (257)
Q Consensus       243 L~l~~~~l~~lP~  255 (257)
                      |++++|.+..+|.
T Consensus       129 L~L~~n~l~~l~~  141 (353)
T 2z80_A          129 LNLLGNPYKTLGE  141 (353)
T ss_dssp             EECTTCCCSSSCS
T ss_pred             EECCCCCCcccCc
Confidence            9999999888876

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=98.80  E-value=1.3e-08  Score=97.65  Aligned_cols=105  Identities=23%  Similarity=0.190  Sum_probs=45.8

Q ss_pred             CcEEEEEEeCCCCcc---ccccCCCCCccEEEeecCCCCCCCcccchHhhccCcccceEEEeCCCCccC-chhcCCCCCC
Q 037304          141 ENVKRFTAHGNLNDF---AFLDHFDSFLHSLLHLTSGSHYLNPTYCEKICKMFKFLRVLDLGSLVLIRY-PFEIENLFLL  216 (257)
Q Consensus       141 ~~~r~L~~~~~~~~~---~~~~~~~~~Lrsl~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~l~~l-p~~i~~L~~L  216 (257)
                      ..+++|.+..+....   .....+. +|+.|.+.++..   ...+.+..|.++++|++|+|++|.+..+ |..++++++|
T Consensus        24 ~~l~~LdLs~N~i~~i~~~~~~~l~-~L~~LdLs~n~~---~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L   99 (844)
T 3j0a_A           24 NTTERLLLSFNYIRTVTASSFPFLE-QLQLLELGSQYT---PLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHL   99 (844)
T ss_dssp             TTCCEEEEESCCCCEECSSSCSSCC-SCSEEEECTTCC---CCEECTTTTSSCTTCCEEECTTCCCCEECTTSSCSCSSC
T ss_pred             CCcCEEECCCCcCCccChhHCcccc-cCeEEeCCCCCC---ccccCHHHhcCCCCCCEEECCCCcCcccCHhHccCCccc
Confidence            445555555544332   2233444 555555554422   1122234444444444444444444433 4444444444


Q ss_pred             cEEEccCCCccc-cchh--HHhcCccccEeeccCCCC
Q 037304          217 RYLHLNIPSLKS-LPSS--LLNSLLNLYTLDKPFSYI  250 (257)
Q Consensus       217 ~~L~l~~~~l~~-lP~~--i~~~L~~L~~L~l~~~~l  250 (257)
                      ++|++++|.+.. +|..  + ++|++|++|++++|.+
T Consensus       100 ~~L~Ls~n~l~~~~~~~~~~-~~L~~L~~L~Ls~N~l  135 (844)
T 3j0a_A          100 FELRLYFCGLSDAVLKDGYF-RNLKALTRLDLSKNQI  135 (844)
T ss_dssp             CCEECTTCCCSSCCSTTCCC-SSCSSCCEEEEESCCC
T ss_pred             CEeeCcCCCCCcccccCccc-cccCCCCEEECCCCcc
Confidence            444444444432 2322  3 4444444444444443

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=98.78  E-value=2.3e-08  Score=82.86  Aligned_cols=102  Identities=23%  Similarity=0.080  Sum_probs=71.7

Q ss_pred             CcEEEEEEeCCCCcc-ccccCCCCCccEEEeecCCCCCCCcccchHhhccCcccceEEEeCCCCccCchhcCCCCCCcEE
Q 037304          141 ENVKRFTAHGNLNDF-AFLDHFDSFLHSLLHLTSGSHYLNPTYCEKICKMFKFLRVLDLGSLVLIRYPFEIENLFLLRYL  219 (257)
Q Consensus       141 ~~~r~L~~~~~~~~~-~~~~~~~~~Lrsl~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~l~~lp~~i~~L~~L~~L  219 (257)
                      ..++.|.+..+.... +....++ +|+.|.+.++....     .+. +.. ++|+.|++++|.+..+| .++.+++|++|
T Consensus        63 ~~L~~L~L~~N~i~~~~~l~~l~-~L~~L~L~~N~l~~-----l~~-~~~-~~L~~L~L~~N~l~~~~-~l~~l~~L~~L  133 (263)
T 1xeu_A           63 TNLKELHLSHNQISDLSPLKDLT-KLEELSVNRNRLKN-----LNG-IPS-ACLSRLFLDNNELRDTD-SLIHLKNLEIL  133 (263)
T ss_dssp             TTCCEEECCSSCCCCCGGGTTCS-SCCEEECCSSCCSC-----CTT-CCC-SSCCEEECCSSCCSBSG-GGTTCTTCCEE
T ss_pred             CCCCEEECCCCccCCChhhccCC-CCCEEECCCCccCC-----cCc-ccc-CcccEEEccCCccCCCh-hhcCcccccEE
Confidence            566777776665443 3355666 77777777766532     111 222 77888888888877765 47888888888


Q ss_pred             EccCCCccccchhHHhcCccccEeeccCCCCCcC
Q 037304          220 HLNIPSLKSLPSSLLNSLLNLYTLDKPFSYIDHT  253 (257)
Q Consensus       220 ~l~~~~l~~lP~~i~~~L~~L~~L~l~~~~l~~l  253 (257)
                      ++++|.++.+| .+ +.+++|++|++++|.+..+
T Consensus       134 ~Ls~N~i~~~~-~l-~~l~~L~~L~L~~N~i~~~  165 (263)
T 1xeu_A          134 SIRNNKLKSIV-ML-GFLSKLEVLDLHGNEITNT  165 (263)
T ss_dssp             ECTTSCCCBCG-GG-GGCTTCCEEECTTSCCCBC
T ss_pred             ECCCCcCCCCh-HH-ccCCCCCEEECCCCcCcch
Confidence            88888888886 56 8888888888888877654

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}

Probab=98.78  E-value=1.1e-08  Score=98.09  Aligned_cols=109  Identities=14%  Similarity=0.180  Sum_probs=76.3

Q ss_pred             CcEEEEEEeCCCCc--cc-cccCCCCCccEEEeecCC-CCCCCcc-cchHhhccCc-------ccceEEEeCCCCccCch
Q 037304          141 ENVKRFTAHGNLND--FA-FLDHFDSFLHSLLHLTSG-SHYLNPT-YCEKICKMFK-------FLRVLDLGSLVLIRYPF  208 (257)
Q Consensus       141 ~~~r~L~~~~~~~~--~~-~~~~~~~~Lrsl~l~~~~-~~~~~~~-~~~~~~~~l~-------~Lr~L~L~~~~l~~lp~  208 (257)
                      ..++.|.+..+...  .| ....++ +|+.|.+.++. ..    . ..|..+..++       +|+.|++++|.+..+|.
T Consensus       491 ~~L~~L~Ls~N~l~~~iP~~l~~L~-~L~~L~Ls~N~~ls----g~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~~ip~  565 (876)
T 4ecn_A          491 KDLTDVELYNCPNMTQLPDFLYDLP-ELQSLNIACNRGIS----AAQLKADWTRLADDEDTGPKIQIFYMGYNNLEEFPA  565 (876)
T ss_dssp             TTCCEEEEESCTTCCSCCGGGGGCS-SCCEEECTTCTTSC----HHHHHHHHHHHHHCTTTTTTCCEEECCSSCCCBCCC
T ss_pred             CCCCEEECcCCCCCccChHHHhCCC-CCCEEECcCCCCcc----cccchHHHHhhhhcccccCCccEEEeeCCcCCccCC
Confidence            66788888877532  23 456777 88888888776 32    2 3444444444       77888888777777777


Q ss_pred             --hcCCCCCCcEEEccCCCccccchhHHhcCccccEeeccCCCCCcCCCC
Q 037304          209 --EIENLFLLRYLHLNIPSLKSLPSSLLNSLLNLYTLDKPFSYIDHTVDE  256 (257)
Q Consensus       209 --~i~~L~~L~~L~l~~~~l~~lP~~i~~~L~~L~~L~l~~~~l~~lP~~  256 (257)
                        .++++++|++|++++|.+..+| .+ +++++|+.|++++|.+..+|.+
T Consensus       566 ~~~l~~L~~L~~L~Ls~N~l~~lp-~~-~~L~~L~~L~Ls~N~l~~lp~~  613 (876)
T 4ecn_A          566 SASLQKMVKLGLLDCVHNKVRHLE-AF-GTNVKLTDLKLDYNQIEEIPED  613 (876)
T ss_dssp             HHHHTTCTTCCEEECTTSCCCBCC-CC-CTTSEESEEECCSSCCSCCCTT
T ss_pred             hhhhhcCCCCCEEECCCCCcccch-hh-cCCCcceEEECcCCccccchHH
Confidence              7777777777777777777777 66 7777777777777776677654

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=98.78  E-value=1.2e-08  Score=93.91  Aligned_cols=107  Identities=15%  Similarity=-0.028  Sum_probs=79.0

Q ss_pred             CcEEEEEEeCCCCcc---ccccCCCCCccEEEeecCCCCCCCcccchHhhccCcccceEEEeCCCCccC-chhcCCCCCC
Q 037304          141 ENVKRFTAHGNLNDF---AFLDHFDSFLHSLLHLTSGSHYLNPTYCEKICKMFKFLRVLDLGSLVLIRY-PFEIENLFLL  216 (257)
Q Consensus       141 ~~~r~L~~~~~~~~~---~~~~~~~~~Lrsl~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~l~~l-p~~i~~L~~L  216 (257)
                      ..+++|.+..+....   ....+++ +|++|.+.++...    ...+..|.++++|++|++++|.+..+ |..++.+++|
T Consensus        33 ~~l~~L~Ls~n~i~~~~~~~~~~l~-~L~~L~Ls~n~i~----~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L  107 (606)
T 3t6q_A           33 NSTECLEFSFNVLPTIQNTTFSRLI-NLTFLDLTRCQIY----WIHEDTFQSQHRLDTLVLTANPLIFMAETALSGPKAL  107 (606)
T ss_dssp             TTCCEEECTTCCCSEECTTTSTTCT-TCSEEECTTCCCC----EECTTTTTTCTTCCEEECTTCCCSEECTTTTSSCTTC
T ss_pred             CcCcEEEccCCccCcCChhHhccCc-cceEEECCCCccc----eeChhhccCccccCeeeCCCCcccccChhhhcccccc
Confidence            567777777776553   2445677 8888888877643    45567788888888888888887754 6778888888


Q ss_pred             cEEEccCCCcccc-chhHHhcCccccEeeccCCCCCcC
Q 037304          217 RYLHLNIPSLKSL-PSSLLNSLLNLYTLDKPFSYIDHT  253 (257)
Q Consensus       217 ~~L~l~~~~l~~l-P~~i~~~L~~L~~L~l~~~~l~~l  253 (257)
                      ++|++++|.++.+ |..+ +++++|++|++++|.+..+
T Consensus       108 ~~L~L~~n~i~~l~~~~~-~~l~~L~~L~L~~n~l~~~  144 (606)
T 3t6q_A          108 KHLFFIQTGISSIDFIPL-HNQKTLESLYLGSNHISSI  144 (606)
T ss_dssp             CEEECTTSCCSCGGGSCC-TTCTTCCEEECCSSCCCCC
T ss_pred             cEeeccccCcccCCcchh-ccCCcccEEECCCCccccc
Confidence            8888888888777 4555 7888888888888877655

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=98.78  E-value=1.3e-08  Score=91.10  Aligned_cols=105  Identities=18%  Similarity=0.084  Sum_probs=48.5

Q ss_pred             CcEEEEEEeCCCCcc---ccccCCCCCccEEEeecCCCCCCCcccchHhhccCcccceEEEeCCCCccCch-hcCCCCCC
Q 037304          141 ENVKRFTAHGNLNDF---AFLDHFDSFLHSLLHLTSGSHYLNPTYCEKICKMFKFLRVLDLGSLVLIRYPF-EIENLFLL  216 (257)
Q Consensus       141 ~~~r~L~~~~~~~~~---~~~~~~~~~Lrsl~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~l~~lp~-~i~~L~~L  216 (257)
                      ..++.|.+..+....   .....++ +|+.|.+.++...    ...+..|.++++|+.|+|++|.+..+|. .++++++|
T Consensus        32 ~~l~~L~L~~n~l~~~~~~~~~~l~-~L~~L~L~~n~i~----~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L  106 (477)
T 2id5_A           32 TETRLLDLGKNRIKTLNQDEFASFP-HLEELELNENIVS----AVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNL  106 (477)
T ss_dssp             TTCSEEECCSSCCCEECTTTTTTCT-TCCEEECTTSCCC----EECTTTTTTCTTCCEEECCSSCCCSCCTTSSTTCTTC
T ss_pred             CCCcEEECCCCccceECHhHccCCC-CCCEEECCCCccC----EeChhhhhCCccCCEEECCCCcCCccCcccccCCCCC
Confidence            344555555444332   1233444 5555555554332    2334445555555555555555554443 23445555


Q ss_pred             cEEEccCCCccccchhHHhcCccccEeeccCCCC
Q 037304          217 RYLHLNIPSLKSLPSSLLNSLLNLYTLDKPFSYI  250 (257)
Q Consensus       217 ~~L~l~~~~l~~lP~~i~~~L~~L~~L~l~~~~l  250 (257)
                      ++|++++|.+..+++..|+++++|++|++++|.+
T Consensus       107 ~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l  140 (477)
T 2id5_A          107 TKLDISENKIVILLDYMFQDLYNLKSLEVGDNDL  140 (477)
T ss_dssp             CEEECTTSCCCEECTTTTTTCTTCCEEEECCTTC
T ss_pred             CEEECCCCccccCChhHccccccCCEEECCCCcc
Confidence            5555555554433222114444444444444443

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=98.77  E-value=1.6e-08  Score=92.50  Aligned_cols=104  Identities=16%  Similarity=0.096  Sum_probs=85.2

Q ss_pred             CcEEEEEEeCCCCcc---ccccCCCCCccEEEeecCCCCCCCcccchHhhccCcccceEEEeCCCCccCchhcCCCCCCc
Q 037304          141 ENVKRFTAHGNLNDF---AFLDHFDSFLHSLLHLTSGSHYLNPTYCEKICKMFKFLRVLDLGSLVLIRYPFEIENLFLLR  217 (257)
Q Consensus       141 ~~~r~L~~~~~~~~~---~~~~~~~~~Lrsl~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~l~~lp~~i~~L~~L~  217 (257)
                      ..++.|.+..+....   .....++ +|+.|.+.++...    ...+..|.++++|++|++++|.++.+|..  .+++|+
T Consensus        52 ~~L~~L~Ls~N~i~~~~~~~~~~l~-~L~~L~Ls~N~l~----~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~--~l~~L~  124 (562)
T 3a79_B           52 PRTKALSLSQNSISELRMPDISFLS-ELRVLRLSHNRIR----SLDFHVFLFNQDLEYLDVSHNRLQNISCC--PMASLR  124 (562)
T ss_dssp             TTCCEEECCSSCCCCCCGGGTTTCT-TCCEEECCSCCCC----EECTTTTTTCTTCCEEECTTSCCCEECSC--CCTTCS
T ss_pred             CCcCEEECCCCCccccChhhhccCC-CccEEECCCCCCC----cCCHHHhCCCCCCCEEECCCCcCCccCcc--ccccCC
Confidence            677888888876553   2456778 9999999888653    45677889999999999999999988877  899999


Q ss_pred             EEEccCCCccccc--hhHHhcCccccEeeccCCCCCc
Q 037304          218 YLHLNIPSLKSLP--SSLLNSLLNLYTLDKPFSYIDH  252 (257)
Q Consensus       218 ~L~l~~~~l~~lP--~~i~~~L~~L~~L~l~~~~l~~  252 (257)
                      +|++++|.+..+|  ..+ +++++|++|++++|.+..
T Consensus       125 ~L~Ls~N~l~~l~~p~~~-~~l~~L~~L~L~~n~l~~  160 (562)
T 3a79_B          125 HLDLSFNDFDVLPVCKEF-GNLTKLTFLGLSAAKFRQ  160 (562)
T ss_dssp             EEECCSSCCSBCCCCGGG-GGCTTCCEEEEECSBCCT
T ss_pred             EEECCCCCccccCchHhh-cccCcccEEecCCCcccc
Confidence            9999999988765  677 999999999999987653

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=98.77  E-value=2.6e-08  Score=83.69  Aligned_cols=104  Identities=22%  Similarity=0.122  Sum_probs=83.3

Q ss_pred             CcEEEEEEeCCCCcc-ccccCCCCCccEEEeecCCCCCCCcccchHhhccCcccceEEEeCCCCccCchhcCCCCCCcEE
Q 037304          141 ENVKRFTAHGNLNDF-AFLDHFDSFLHSLLHLTSGSHYLNPTYCEKICKMFKFLRVLDLGSLVLIRYPFEIENLFLLRYL  219 (257)
Q Consensus       141 ~~~r~L~~~~~~~~~-~~~~~~~~~Lrsl~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~l~~lp~~i~~L~~L~~L  219 (257)
                      ..++.|.+..+.... +....++ +|+.|.+.++....     + +.+..+++|+.|++++|.+..++ .++.+++|++|
T Consensus        68 ~~L~~L~L~~n~l~~~~~l~~l~-~L~~L~l~~n~l~~-----~-~~l~~l~~L~~L~L~~n~i~~~~-~l~~l~~L~~L  139 (291)
T 1h6t_A           68 PNVTKLFLNGNKLTDIKPLANLK-NLGWLFLDENKVKD-----L-SSLKDLKKLKSLSLEHNGISDIN-GLVHLPQLESL  139 (291)
T ss_dssp             TTCCEEECCSSCCCCCGGGTTCT-TCCEEECCSSCCCC-----G-GGGTTCTTCCEEECTTSCCCCCG-GGGGCTTCCEE
T ss_pred             CCCCEEEccCCccCCCcccccCC-CCCEEECCCCcCCC-----C-hhhccCCCCCEEECCCCcCCCCh-hhcCCCCCCEE
Confidence            677888887776543 3466777 89999888877641     2 34888999999999999988774 58889999999


Q ss_pred             EccCCCccccchhHHhcCccccEeeccCCCCCcCC
Q 037304          220 HLNIPSLKSLPSSLLNSLLNLYTLDKPFSYIDHTV  254 (257)
Q Consensus       220 ~l~~~~l~~lP~~i~~~L~~L~~L~l~~~~l~~lP  254 (257)
                      ++++|.++.+ +.+ +++++|++|++++|.+..+|
T Consensus       140 ~l~~n~l~~~-~~l-~~l~~L~~L~L~~N~l~~~~  172 (291)
T 1h6t_A          140 YLGNNKITDI-TVL-SRLTKLDTLSLEDNQISDIV  172 (291)
T ss_dssp             ECCSSCCCCC-GGG-GGCTTCSEEECCSSCCCCCG
T ss_pred             EccCCcCCcc-hhh-ccCCCCCEEEccCCccccch
Confidence            9999998888 567 89999999999999887765

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=98.77  E-value=1.6e-08  Score=90.08  Aligned_cols=88  Identities=19%  Similarity=0.109  Sum_probs=78.4

Q ss_pred             CccEEEeecCCCCCCCcccchHhhccCcccceEEEeCCCCccCc-hhcCCCCCCcEEEccCCCccccchhHHhcCccccE
Q 037304          164 FLHSLLHLTSGSHYLNPTYCEKICKMFKFLRVLDLGSLVLIRYP-FEIENLFLLRYLHLNIPSLKSLPSSLLNSLLNLYT  242 (257)
Q Consensus       164 ~Lrsl~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~l~~lp-~~i~~L~~L~~L~l~~~~l~~lP~~i~~~L~~L~~  242 (257)
                      +++.|.+.++...    ...+..|.++++|+.|+|++|.+..++ ..+.++++|++|+|++|.++.+|...|+.+++|++
T Consensus        76 ~l~~L~L~~n~i~----~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~  151 (452)
T 3zyi_A           76 NTRYLNLMENNIQ----MIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRE  151 (452)
T ss_dssp             TCSEEECCSSCCC----EECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSBCCTTTSSSCTTCCE
T ss_pred             CccEEECcCCcCc----eECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCCcCCccChhhhcccCCCCE
Confidence            8999999988753    566788999999999999999999764 78999999999999999999999875489999999


Q ss_pred             eeccCCCCCcCCC
Q 037304          243 LDKPFSYIDHTVD  255 (257)
Q Consensus       243 L~l~~~~l~~lP~  255 (257)
                      |++++|.+..+|.
T Consensus       152 L~L~~N~l~~~~~  164 (452)
T 3zyi_A          152 LWLRNNPIESIPS  164 (452)
T ss_dssp             EECCSCCCCEECT
T ss_pred             EECCCCCcceeCH
Confidence            9999999887775

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=98.76  E-value=1.6e-08  Score=91.43  Aligned_cols=84  Identities=18%  Similarity=0.059  Sum_probs=75.5

Q ss_pred             CCCccEEEeecCCCCCCCcccchHhhccCcccceEEEeCCCCccC-chhcCCCCCCcEEEccCCCccccchhHHhcCccc
Q 037304          162 DSFLHSLLHLTSGSHYLNPTYCEKICKMFKFLRVLDLGSLVLIRY-PFEIENLFLLRYLHLNIPSLKSLPSSLLNSLLNL  240 (257)
Q Consensus       162 ~~~Lrsl~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~l~~l-p~~i~~L~~L~~L~l~~~~l~~lP~~i~~~L~~L  240 (257)
                      + +++.|.+.++...    ...+..|.++++|++|++++|.+..+ |..++++++|++|++++|.++.+|..   .+++|
T Consensus        21 ~-~L~~L~Ls~n~i~----~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~---~l~~L   92 (520)
T 2z7x_B           21 Q-KTTILNISQNYIS----ELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNKLVKISCH---PTVNL   92 (520)
T ss_dssp             T-TCSEEECCSSCCC----CCCHHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSSCCCEEECC---CCCCC
T ss_pred             c-cccEEECCCCccc----ccChhhccccccccEEecCCCccCCcChHHhhcccCCCEEecCCCceeecCcc---ccCCc
Confidence            6 9999999988764    45668899999999999999999977 78999999999999999999999986   79999


Q ss_pred             cEeeccCCCCCcC
Q 037304          241 YTLDKPFSYIDHT  253 (257)
Q Consensus       241 ~~L~l~~~~l~~l  253 (257)
                      ++|++++|.+..+
T Consensus        93 ~~L~L~~N~l~~~  105 (520)
T 2z7x_B           93 KHLDLSFNAFDAL  105 (520)
T ss_dssp             SEEECCSSCCSSC
T ss_pred             cEEeccCCccccc
Confidence            9999999998753

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=98.76  E-value=3.1e-08  Score=84.53  Aligned_cols=104  Identities=13%  Similarity=0.152  Sum_probs=78.9

Q ss_pred             CcEEEEEEeCCCCcc---ccccCCCCCccEEEeecCCCCCCCcccchHhhccCcccceEEEeCCCCccCchhcCCCCCCc
Q 037304          141 ENVKRFTAHGNLNDF---AFLDHFDSFLHSLLHLTSGSHYLNPTYCEKICKMFKFLRVLDLGSLVLIRYPFEIENLFLLR  217 (257)
Q Consensus       141 ~~~r~L~~~~~~~~~---~~~~~~~~~Lrsl~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~l~~lp~~i~~L~~L~  217 (257)
                      ..++.|.+..+....   .....++ +|+.|.+.++...    ...+..|.++++|+.|++++|.+..+|..+.  ++|+
T Consensus        54 ~~l~~L~l~~n~i~~~~~~~~~~l~-~L~~L~L~~n~l~----~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~--~~L~  126 (332)
T 2ft3_A           54 PDTTLLDLQNNDISELRKDDFKGLQ-HLYALVLVNNKIS----KIHEKAFSPLRKLQKLYISKNHLVEIPPNLP--SSLV  126 (332)
T ss_dssp             TTCCEEECCSSCCCEECTTTTTTCT-TCCEEECCSSCCC----EECGGGSTTCTTCCEEECCSSCCCSCCSSCC--TTCC
T ss_pred             CCCeEEECCCCcCCccCHhHhhCCC-CCcEEECCCCccC----ccCHhHhhCcCCCCEEECCCCcCCccCcccc--ccCC
Confidence            567778777766543   2356677 8888888877653    4556778888899999999888888887766  6888


Q ss_pred             EEEccCCCccccchhHHhcCccccEeeccCCCCC
Q 037304          218 YLHLNIPSLKSLPSSLLNSLLNLYTLDKPFSYID  251 (257)
Q Consensus       218 ~L~l~~~~l~~lP~~i~~~L~~L~~L~l~~~~l~  251 (257)
                      +|++++|.+..+|...|+++++|++|++++|.+.
T Consensus       127 ~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~  160 (332)
T 2ft3_A          127 ELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLE  160 (332)
T ss_dssp             EEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCB
T ss_pred             EEECCCCccCccCHhHhCCCccCCEEECCCCccc
Confidence            8888888888887764478888888888887764

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=98.76  E-value=1.3e-08  Score=96.59  Aligned_cols=91  Identities=21%  Similarity=0.212  Sum_probs=80.3

Q ss_pred             cCCCCCccEEEeecCCCCCCCcccchHhhccCcccceEEEeCCCCc-cCchhcCCCCCCcEEEccCCCcc-ccchhHHhc
Q 037304          159 DHFDSFLHSLLHLTSGSHYLNPTYCEKICKMFKFLRVLDLGSLVLI-RYPFEIENLFLLRYLHLNIPSLK-SLPSSLLNS  236 (257)
Q Consensus       159 ~~~~~~Lrsl~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~l~-~lp~~i~~L~~L~~L~l~~~~l~-~lP~~i~~~  236 (257)
                      ..+. .++.|.+.++...    +..|..+..++.|++|+|++|.+. .+|.+++.+++|++|+|++|.++ .+|.++ ++
T Consensus       629 ~~l~-~L~~LdLs~N~l~----g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~l-~~  702 (768)
T 3rgz_A          629 DNNG-SMMFLDMSYNMLS----GYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAM-SA  702 (768)
T ss_dssp             SSSB-CCCEEECCSSCCB----SCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEECCCGGG-GG
T ss_pred             hccc-cccEEECcCCccc----ccCCHHHhccccCCEEeCcCCccCCCCChHHhCCCCCCEEECCCCcccCcCChHH-hC
Confidence            3456 8889999888753    467788999999999999999988 88999999999999999999987 889999 99


Q ss_pred             CccccEeeccCCCCC-cCCC
Q 037304          237 LLNLYTLDKPFSYID-HTVD  255 (257)
Q Consensus       237 L~~L~~L~l~~~~l~-~lP~  255 (257)
                      +++|++|++++|++. .+|.
T Consensus       703 l~~L~~L~ls~N~l~g~iP~  722 (768)
T 3rgz_A          703 LTMLTEIDLSNNNLSGPIPE  722 (768)
T ss_dssp             CCCCSEEECCSSEEEEECCS
T ss_pred             CCCCCEEECcCCcccccCCC
Confidence            999999999999865 6775

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=98.75  E-value=1.5e-08  Score=90.69  Aligned_cols=87  Identities=26%  Similarity=0.218  Sum_probs=77.3

Q ss_pred             CccEEEeecCCCCCCCcccchHhhccCcccceEEEeCCCCccC-chhcCCCCCCcEEEccCCCccccchhHHhcCccccE
Q 037304          164 FLHSLLHLTSGSHYLNPTYCEKICKMFKFLRVLDLGSLVLIRY-PFEIENLFLLRYLHLNIPSLKSLPSSLLNSLLNLYT  242 (257)
Q Consensus       164 ~Lrsl~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~l~~l-p~~i~~L~~L~~L~l~~~~l~~lP~~i~~~L~~L~~  242 (257)
                      .++.|.+.++...    ...+..|.++++|+.|+|++|.+..+ |..++++++|++|++++|.++.+|...|+++++|++
T Consensus        33 ~l~~L~L~~n~l~----~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~  108 (477)
T 2id5_A           33 ETRLLDLGKNRIK----TLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTK  108 (477)
T ss_dssp             TCSEEECCSSCCC----EECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCSCCTTSSTTCTTCCE
T ss_pred             CCcEEECCCCccc----eECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCCcCCccCcccccCCCCCCE
Confidence            8999999988754    45677899999999999999999876 789999999999999999999999875589999999


Q ss_pred             eeccCCCCCcCC
Q 037304          243 LDKPFSYIDHTV  254 (257)
Q Consensus       243 L~l~~~~l~~lP  254 (257)
                      |++++|.+..++
T Consensus       109 L~Ls~n~i~~~~  120 (477)
T 2id5_A          109 LDISENKIVILL  120 (477)
T ss_dssp             EECTTSCCCEEC
T ss_pred             EECCCCccccCC
Confidence            999999877654

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=98.75  E-value=1.1e-08  Score=86.34  Aligned_cols=107  Identities=21%  Similarity=0.167  Sum_probs=60.6

Q ss_pred             CcEEEEEEeCCCCcc-cc--ccCCCCCccEEEeecCCCCCCCcccchHhhccCcccceEEEeCCCCccCchhcCCCCCCc
Q 037304          141 ENVKRFTAHGNLNDF-AF--LDHFDSFLHSLLHLTSGSHYLNPTYCEKICKMFKFLRVLDLGSLVLIRYPFEIENLFLLR  217 (257)
Q Consensus       141 ~~~r~L~~~~~~~~~-~~--~~~~~~~Lrsl~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~l~~lp~~i~~L~~L~  217 (257)
                      ..+++|.+..+.... +.  ...++ +|+.|.+.++...  .....+..+..+++|++|++++|.+..+|..+..+++|+
T Consensus        28 ~~l~~L~L~~n~l~~i~~~~~~~l~-~L~~L~L~~n~l~--~~~~~~~~~~~~~~L~~L~Ls~n~i~~l~~~~~~l~~L~  104 (306)
T 2z66_A           28 SSATRLELESNKLQSLPHGVFDKLT-QLTKLSLSSNGLS--FKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLE  104 (306)
T ss_dssp             TTCCEEECCSSCCCCCCTTTTTTCT-TCSEEECCSSCCC--EEEEEEHHHHSCSCCCEEECCSCSEEEEEEEEETCTTCC
T ss_pred             CCCCEEECCCCccCccCHhHhhccc-cCCEEECCCCccC--cccCcccccccccccCEEECCCCccccChhhcCCCCCCC
Confidence            456666666655432 21  34566 7777777666542  111123444556666666666666666665566666666


Q ss_pred             EEEccCCCccccch--hHHhcCccccEeeccCCCCC
Q 037304          218 YLHLNIPSLKSLPS--SLLNSLLNLYTLDKPFSYID  251 (257)
Q Consensus       218 ~L~l~~~~l~~lP~--~i~~~L~~L~~L~l~~~~l~  251 (257)
                      +|++++|.+..+|.  .+ +++++|++|++++|.+.
T Consensus       105 ~L~l~~n~l~~~~~~~~~-~~l~~L~~L~l~~n~l~  139 (306)
T 2z66_A          105 HLDFQHSNLKQMSEFSVF-LSLRNLIYLDISHTHTR  139 (306)
T ss_dssp             EEECTTSEEESSTTTTTT-TTCTTCCEEECTTSCCE
T ss_pred             EEECCCCcccccccchhh-hhccCCCEEECCCCcCC
Confidence            66666666555553  34 55666666666655544

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=98.75  E-value=2e-08  Score=91.84  Aligned_cols=102  Identities=15%  Similarity=-0.004  Sum_probs=84.5

Q ss_pred             EEEEEeCCCCcc-ccccCCCCCccEEEeecCCCCCCCcccchHhhccCcccceEEEeCCCCccC-chhcCCCCCCcEEEc
Q 037304          144 KRFTAHGNLNDF-AFLDHFDSFLHSLLHLTSGSHYLNPTYCEKICKMFKFLRVLDLGSLVLIRY-PFEIENLFLLRYLHL  221 (257)
Q Consensus       144 r~L~~~~~~~~~-~~~~~~~~~Lrsl~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~l~~l-p~~i~~L~~L~~L~l  221 (257)
                      +++.+.++.... |... .+ +++.|.+.++...    ...+..|.++++|++|++++|.++.+ |..++++++|++|++
T Consensus        34 ~~l~ls~~~L~~ip~~~-~~-~L~~L~Ls~N~i~----~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L  107 (562)
T 3a79_B           34 SMVDYSNRNLTHVPKDL-PP-RTKALSLSQNSIS----ELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDV  107 (562)
T ss_dssp             CEEECTTSCCCSCCTTS-CT-TCCEEECCSSCCC----CCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEEC
T ss_pred             cEEEcCCCCCccCCCCC-CC-CcCEEECCCCCcc----ccChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEEC
Confidence            566666555442 3322 26 9999999988764    45667899999999999999999977 688999999999999


Q ss_pred             cCCCccccchhHHhcCccccEeeccCCCCCcCC
Q 037304          222 NIPSLKSLPSSLLNSLLNLYTLDKPFSYIDHTV  254 (257)
Q Consensus       222 ~~~~l~~lP~~i~~~L~~L~~L~l~~~~l~~lP  254 (257)
                      ++|.++.+|..   .+++|++|++++|.+..+|
T Consensus       108 s~N~l~~lp~~---~l~~L~~L~Ls~N~l~~l~  137 (562)
T 3a79_B          108 SHNRLQNISCC---PMASLRHLDLSFNDFDVLP  137 (562)
T ss_dssp             TTSCCCEECSC---CCTTCSEEECCSSCCSBCC
T ss_pred             CCCcCCccCcc---ccccCCEEECCCCCccccC
Confidence            99999999986   7999999999999988765

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=98.74  E-value=9.5e-09  Score=95.60  Aligned_cols=109  Identities=14%  Similarity=0.201  Sum_probs=72.4

Q ss_pred             CcEEEEEEeCCCCc--cc-cccCCCCCccEEEeecCC-CCCCCcc-cchHhhccC------cccceEEEeCCCCccCch-
Q 037304          141 ENVKRFTAHGNLND--FA-FLDHFDSFLHSLLHLTSG-SHYLNPT-YCEKICKMF------KFLRVLDLGSLVLIRYPF-  208 (257)
Q Consensus       141 ~~~r~L~~~~~~~~--~~-~~~~~~~~Lrsl~l~~~~-~~~~~~~-~~~~~~~~l------~~Lr~L~L~~~~l~~lp~-  208 (257)
                      ..+++|.+..+...  .| ....++ +|+.|.+.++. ..    . ..|..+..+      ++|++|++++|.+..+|. 
T Consensus       249 ~~L~~L~L~~n~l~~~~p~~l~~l~-~L~~L~Ls~n~~l~----~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~~ip~~  323 (636)
T 4eco_A          249 KDLTDVEVYNCPNLTKLPTFLKALP-EMQLINVACNRGIS----GEQLKDDWQALADAPVGEKIQIIYIGYNNLKTFPVE  323 (636)
T ss_dssp             TTCCEEEEECCTTCSSCCTTTTTCS-SCCEEECTTCTTSC----HHHHHHHHHHHHHSGGGGTCCEEECCSSCCSSCCCH
T ss_pred             CCCCEEEecCCcCCccChHHHhcCC-CCCEEECcCCCCCc----cccchHHHHhhhccccCCCCCEEECCCCcCCccCch
Confidence            56778888877533  23 445677 88888887776 31    2 344555554      777777777777777777 


Q ss_pred             -hcCCCCCCcEEEccCCCcc-ccchhHHhcCccccEeeccCCCCCcCCCC
Q 037304          209 -EIENLFLLRYLHLNIPSLK-SLPSSLLNSLLNLYTLDKPFSYIDHTVDE  256 (257)
Q Consensus       209 -~i~~L~~L~~L~l~~~~l~-~lP~~i~~~L~~L~~L~l~~~~l~~lP~~  256 (257)
                       .++++++|++|++++|.+. .+| .+ +++++|++|++++|.+..+|.+
T Consensus       324 ~~l~~l~~L~~L~L~~N~l~g~ip-~~-~~l~~L~~L~L~~N~l~~lp~~  371 (636)
T 4eco_A          324 TSLQKMKKLGMLECLYNQLEGKLP-AF-GSEIKLASLNLAYNQITEIPAN  371 (636)
T ss_dssp             HHHTTCTTCCEEECCSCCCEEECC-CC-EEEEEESEEECCSSEEEECCTT
T ss_pred             hhhccCCCCCEEeCcCCcCccchh-hh-CCCCCCCEEECCCCccccccHh
Confidence             7777777777777777766 666 55 6666666666666665555543

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=98.73  E-value=2.7e-08  Score=88.30  Aligned_cols=106  Identities=21%  Similarity=0.213  Sum_probs=52.2

Q ss_pred             CcEEEEEEeCCCCcc---ccccCCCCCccEEEeecCCCCCCCcccchHhhccCcccceEEEeCCCCccCch---------
Q 037304          141 ENVKRFTAHGNLNDF---AFLDHFDSFLHSLLHLTSGSHYLNPTYCEKICKMFKFLRVLDLGSLVLIRYPF---------  208 (257)
Q Consensus       141 ~~~r~L~~~~~~~~~---~~~~~~~~~Lrsl~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~l~~lp~---------  208 (257)
                      ..++.|.+..+....   ....+++ +|+.|.+.++...    .+.+..|..+++|+.|++++|.+..+|.         
T Consensus        88 ~~L~~L~Ls~n~i~~i~~~~~~~l~-~L~~L~L~~n~l~----~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L  162 (440)
T 3zyj_A           88 RHLEILQLSRNHIRTIEIGAFNGLA-NLNTLELFDNRLT----TIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSL  162 (440)
T ss_dssp             SSCCEEECCSSCCCEECGGGGTTCS-SCCEEECCSSCCS----SCCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTC
T ss_pred             CCCCEEECCCCcCCccChhhccCCc-cCCEEECCCCcCC----eeCHhHhhccccCceeeCCCCcccccCHHHhhhCccc
Confidence            445555555544332   1233445 5566655555432    2333345555555555555555544432         


Q ss_pred             -----------------hcCCCCCCcEEEccCCCccccchhHHhcCccccEeeccCCCCCcC
Q 037304          209 -----------------EIENLFLLRYLHLNIPSLKSLPSSLLNSLLNLYTLDKPFSYIDHT  253 (257)
Q Consensus       209 -----------------~i~~L~~L~~L~l~~~~l~~lP~~i~~~L~~L~~L~l~~~~l~~l  253 (257)
                                       .+..+++|++|++++|.++.+|. + ..+.+|++|++++|.+..+
T Consensus       163 ~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~-~-~~l~~L~~L~Ls~N~l~~~  222 (440)
T 3zyj_A          163 RRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLREIPN-L-TPLIKLDELDLSGNHLSAI  222 (440)
T ss_dssp             CEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCSSCCC-C-TTCSSCCEEECTTSCCCEE
T ss_pred             CEeCCCCCCCcceeCcchhhcccccCeecCCCCcCccccc-c-CCCcccCEEECCCCccCcc
Confidence                             34445555555555555555553 3 4555555555555554443

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=98.73  E-value=5.1e-09  Score=88.66  Aligned_cols=65  Identities=20%  Similarity=0.137  Sum_probs=43.7

Q ss_pred             hccCcccceEEEeCCCCccC-chhcCCC---CCCcEEEccCCCccccchhHHhcCccccEeeccCCCCCcCC
Q 037304          187 CKMFKFLRVLDLGSLVLIRY-PFEIENL---FLLRYLHLNIPSLKSLPSSLLNSLLNLYTLDKPFSYIDHTV  254 (257)
Q Consensus       187 ~~~l~~Lr~L~L~~~~l~~l-p~~i~~L---~~L~~L~l~~~~l~~lP~~i~~~L~~L~~L~l~~~~l~~lP  254 (257)
                      +..+++|+.|+|++|.+... |..++.+   ++|++|++++|.++.+|..+ .  ++|++|++++|++..+|
T Consensus       220 ~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~-~--~~L~~L~Ls~N~l~~~~  288 (310)
T 4glp_A          220 AAAGVQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLEQVPKGL-P--AKLRVLDLSSNRLNRAP  288 (310)
T ss_dssp             HHHTCCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCCCSCCSCC-C--SCCSCEECCSCCCCSCC
T ss_pred             HhcCCCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCCCCCchhhhh-c--CCCCEEECCCCcCCCCc
Confidence            45667777777777776654 6666655   47777777777777777766 3  67777777777766554

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A

Probab=98.73  E-value=3.5e-08  Score=91.21  Aligned_cols=65  Identities=20%  Similarity=0.112  Sum_probs=36.1

Q ss_pred             hhccCcccceEEEeCCCCccCchhcCCCCCCcEEEccCCCccccchhHHhcCccccEeeccCCCCCcC
Q 037304          186 ICKMFKFLRVLDLGSLVLIRYPFEIENLFLLRYLHLNIPSLKSLPSSLLNSLLNLYTLDKPFSYIDHT  253 (257)
Q Consensus       186 ~~~~l~~Lr~L~L~~~~l~~lp~~i~~L~~L~~L~l~~~~l~~lP~~i~~~L~~L~~L~l~~~~l~~l  253 (257)
                      .+..+++|+.|+|++|.+..++. +..+++|+.|+|++|.+..+| .+ +.|++|+.|+|++|.+...
T Consensus       148 ~l~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N~i~~l~-~l-~~l~~L~~L~L~~N~l~~~  212 (605)
T 1m9s_A          148 VLSRLTKLDTLSLEDNQISDIVP-LAGLTKLQNLYLSKNHISDLR-AL-AGLKNLDVLELFSQECLNK  212 (605)
T ss_dssp             GGGSCTTCSEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCBCG-GG-TTCTTCSEEECCSEEEECC
T ss_pred             hhcccCCCCEEECcCCcCCCchh-hccCCCCCEEECcCCCCCCCh-HH-ccCCCCCEEEccCCcCcCC
Confidence            44555555555555555555444 555555666666665555553 34 5566666666665554433

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=98.72  E-value=3.3e-08  Score=84.79  Aligned_cols=73  Identities=15%  Similarity=0.083  Sum_probs=64.3

Q ss_pred             chHhhccCcccceEEEeC-CCCccCc-hhcCCCCCCcEEEccCCCccccchhHHhcCccccEeeccCCCCCcCCCC
Q 037304          183 CEKICKMFKFLRVLDLGS-LVLIRYP-FEIENLFLLRYLHLNIPSLKSLPSSLLNSLLNLYTLDKPFSYIDHTVDE  256 (257)
Q Consensus       183 ~~~~~~~l~~Lr~L~L~~-~~l~~lp-~~i~~L~~L~~L~l~~~~l~~lP~~i~~~L~~L~~L~l~~~~l~~lP~~  256 (257)
                      +|. +..+++|+.|+|++ |.+..+| ..++.|++|++|+|++|.++.+|+..|++|.+|+.|+|++|++..+|++
T Consensus        24 ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~   98 (347)
T 2ifg_A           24 LHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNALESLSWK   98 (347)
T ss_dssp             TTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSSCCSCCCST
T ss_pred             cCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCCccceeCHH
Confidence            445 88899999999997 8899886 6799999999999999999988876559999999999999999999864

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}

Probab=98.71  E-value=2.3e-08  Score=95.94  Aligned_cols=108  Identities=12%  Similarity=0.071  Sum_probs=91.5

Q ss_pred             CcEEEEEEeCCCCc-------------------cccc-c--CCCCCccEEEeecCCCCCCCcccchHhhccCcccceEEE
Q 037304          141 ENVKRFTAHGNLND-------------------FAFL-D--HFDSFLHSLLHLTSGSHYLNPTYCEKICKMFKFLRVLDL  198 (257)
Q Consensus       141 ~~~r~L~~~~~~~~-------------------~~~~-~--~~~~~Lrsl~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~L  198 (257)
                      ..++.|.+..+...                   +|.. .  .++ +|+.|.+.++...    ...|..|.++++|+.|++
T Consensus       448 ~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~-~L~~L~Ls~N~l~----~~iP~~l~~L~~L~~L~L  522 (876)
T 4ecn_A          448 TKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLK-DLTDVELYNCPNM----TQLPDFLYDLPELQSLNI  522 (876)
T ss_dssp             TTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCT-TCCEEEEESCTTC----CSCCGGGGGCSSCCEEEC
T ss_pred             CCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCC-CCCEEECcCCCCC----ccChHHHhCCCCCCEEEC
Confidence            67889999887654                   3332 2  678 9999999988643    356688999999999999


Q ss_pred             eCCC-Ccc--CchhcCCCC-------CCcEEEccCCCccccch--hHHhcCccccEeeccCCCCCcCC
Q 037304          199 GSLV-LIR--YPFEIENLF-------LLRYLHLNIPSLKSLPS--SLLNSLLNLYTLDKPFSYIDHTV  254 (257)
Q Consensus       199 ~~~~-l~~--lp~~i~~L~-------~L~~L~l~~~~l~~lP~--~i~~~L~~L~~L~l~~~~l~~lP  254 (257)
                      ++|. ++.  +|..++.++       +|++|++++|.+..+|.  .+ +++++|++|++++|.+..+|
T Consensus       523 s~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~~ip~~~~l-~~L~~L~~L~Ls~N~l~~lp  589 (876)
T 4ecn_A          523 ACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLEEFPASASL-QKMVKLGLLDCVHNKVRHLE  589 (876)
T ss_dssp             TTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCCBCCCHHHH-TTCTTCCEEECTTSCCCBCC
T ss_pred             cCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCCccCChhhh-hcCCCCCEEECCCCCcccch
Confidence            9998 874  898887776       99999999999999999  88 99999999999999988888

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=98.70  E-value=2.7e-08  Score=94.43  Aligned_cols=109  Identities=17%  Similarity=0.070  Sum_probs=74.0

Q ss_pred             CcEEEEEEeCCCCcc---ccccCCCCCccEEEeecCCCCCCCcccchHhhccCcccceEEEeCCCCc-cCchhcCCCCCC
Q 037304          141 ENVKRFTAHGNLNDF---AFLDHFDSFLHSLLHLTSGSHYLNPTYCEKICKMFKFLRVLDLGSLVLI-RYPFEIENLFLL  216 (257)
Q Consensus       141 ~~~r~L~~~~~~~~~---~~~~~~~~~Lrsl~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~l~-~lp~~i~~L~~L  216 (257)
                      ..++.|.+..+....   .....++ +|+.|.+.++...    ...|..+..+++|++|++++|.+. .+|..++.+++|
T Consensus       442 ~~L~~L~L~~n~l~~~~p~~~~~l~-~L~~L~L~~N~l~----~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L  516 (768)
T 3rgz_A          442 SKLRDLKLWLNMLEGEIPQELMYVK-TLETLILDFNDLT----GEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENL  516 (768)
T ss_dssp             TTCCEEECCSSCCCSCCCGGGGGCT-TCCEEECCSSCCC----SCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTC
T ss_pred             CCCCEEECCCCcccCcCCHHHcCCC-CceEEEecCCccc----CcCCHHHhcCCCCCEEEccCCccCCcCChHHhcCCCC
Confidence            344555555544331   2233455 6666666665542    345667777888888888888876 677888888888


Q ss_pred             cEEEccCCCcc-ccchhHHhcCccccEeeccCCCCC-cCCC
Q 037304          217 RYLHLNIPSLK-SLPSSLLNSLLNLYTLDKPFSYID-HTVD  255 (257)
Q Consensus       217 ~~L~l~~~~l~-~lP~~i~~~L~~L~~L~l~~~~l~-~lP~  255 (257)
                      ++|++++|.+. .+|..+ +++++|++|++++|.+. .+|.
T Consensus       517 ~~L~L~~N~l~~~~p~~l-~~l~~L~~L~Ls~N~l~g~ip~  556 (768)
T 3rgz_A          517 AILKLSNNSFSGNIPAEL-GDCRSLIWLDLNTNLFNGTIPA  556 (768)
T ss_dssp             CEEECCSSCCEEECCGGG-GGCTTCCEEECCSSEEESBCCG
T ss_pred             CEEECCCCcccCcCCHHH-cCCCCCCEEECCCCccCCcCCh
Confidence            88888888766 777777 88888888888888754 6664

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A

Probab=98.70  E-value=3.2e-08  Score=88.47  Aligned_cols=104  Identities=15%  Similarity=0.072  Sum_probs=76.1

Q ss_pred             CcEEEEEEeCCCCc-cccccCCCCCccEEEeecCCCCCCCcccchHhhccCcccceEEEeCCCCccCchhcCCCCCCcEE
Q 037304          141 ENVKRFTAHGNLND-FAFLDHFDSFLHSLLHLTSGSHYLNPTYCEKICKMFKFLRVLDLGSLVLIRYPFEIENLFLLRYL  219 (257)
Q Consensus       141 ~~~r~L~~~~~~~~-~~~~~~~~~~Lrsl~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~l~~lp~~i~~L~~L~~L  219 (257)
                      ..++.+.+...... .+....++ +|+.|.+.++...    ... . +..+++|+.|++++|.+..+|. ++++++|++|
T Consensus        46 ~~l~~L~l~~~~i~~l~~~~~l~-~L~~L~Ls~n~l~----~~~-~-~~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L  117 (466)
T 1o6v_A           46 DQVTTLQADRLGIKSIDGVEYLN-NLTQINFSNNQLT----DIT-P-LKNLTKLVDILMNNNQIADITP-LANLTNLTGL  117 (466)
T ss_dssp             HTCCEEECCSSCCCCCTTGGGCT-TCCEEECCSSCCC----CCG-G-GTTCTTCCEEECCSSCCCCCGG-GTTCTTCCEE
T ss_pred             ccccEEecCCCCCccCcchhhhc-CCCEEECCCCccC----Cch-h-hhccccCCEEECCCCccccChh-hcCCCCCCEE
Confidence            56677777665543 24455677 8888888877653    222 2 7788888888888888887766 8888888888


Q ss_pred             EccCCCccccchhHHhcCccccEeeccCCCCCcCC
Q 037304          220 HLNIPSLKSLPSSLLNSLLNLYTLDKPFSYIDHTV  254 (257)
Q Consensus       220 ~l~~~~l~~lP~~i~~~L~~L~~L~l~~~~l~~lP  254 (257)
                      ++++|.++.+|. + +++++|++|++++|.+..+|
T Consensus       118 ~L~~n~l~~~~~-~-~~l~~L~~L~l~~n~l~~~~  150 (466)
T 1o6v_A          118 TLFNNQITDIDP-L-KNLTNLNRLELSSNTISDIS  150 (466)
T ss_dssp             ECCSSCCCCCGG-G-TTCTTCSEEEEEEEEECCCG
T ss_pred             ECCCCCCCCChH-H-cCCCCCCEEECCCCccCCCh
Confidence            888888888776 6 78888888888887765554

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=98.70  E-value=2.1e-08  Score=93.30  Aligned_cols=108  Identities=12%  Similarity=0.136  Sum_probs=91.4

Q ss_pred             CcEEEEEEeCCCCc-------------------cc-ccc--CCCCCccEEEeecCCCCCCCcccchHhhccCcccceEEE
Q 037304          141 ENVKRFTAHGNLND-------------------FA-FLD--HFDSFLHSLLHLTSGSHYLNPTYCEKICKMFKFLRVLDL  198 (257)
Q Consensus       141 ~~~r~L~~~~~~~~-------------------~~-~~~--~~~~~Lrsl~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~L  198 (257)
                      ..++.|.+..+...                   .| ...  .++ +|+.|.+.++...    ...|..+.++++|++|++
T Consensus       206 ~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~-~L~~L~L~~n~l~----~~~p~~l~~l~~L~~L~L  280 (636)
T 4eco_A          206 TKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLK-DLTDVEVYNCPNL----TKLPTFLKALPEMQLINV  280 (636)
T ss_dssp             TTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCT-TCCEEEEECCTTC----SSCCTTTTTCSSCCEEEC
T ss_pred             cCCCEEECcCCccccccccccccccccchhcccCchhhhhcccC-CCCEEEecCCcCC----ccChHHHhcCCCCCEEEC
Confidence            67888888887643                   22 233  678 9999999988753    356688999999999999


Q ss_pred             eCCC-Cc--cCchhcCCC------CCCcEEEccCCCccccch--hHHhcCccccEeeccCCCCC-cCC
Q 037304          199 GSLV-LI--RYPFEIENL------FLLRYLHLNIPSLKSLPS--SLLNSLLNLYTLDKPFSYID-HTV  254 (257)
Q Consensus       199 ~~~~-l~--~lp~~i~~L------~~L~~L~l~~~~l~~lP~--~i~~~L~~L~~L~l~~~~l~-~lP  254 (257)
                      ++|. ++  .+|..++.+      ++|++|++++|.++.+|.  .+ +++++|++|++++|.+. .+|
T Consensus       281 s~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~~ip~~~~l-~~l~~L~~L~L~~N~l~g~ip  347 (636)
T 4eco_A          281 ACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLKTFPVETSL-QKMKKLGMLECLYNQLEGKLP  347 (636)
T ss_dssp             TTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCSSCCCHHHH-TTCTTCCEEECCSCCCEEECC
T ss_pred             cCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCCccCchhhh-ccCCCCCEEeCcCCcCccchh
Confidence            9998 88  489999887      999999999999999999  88 99999999999999988 887

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=98.69  E-value=6.2e-08  Score=82.93  Aligned_cols=104  Identities=20%  Similarity=0.075  Sum_probs=55.4

Q ss_pred             CcEEEEEEeCCCCcc-ccccCCCCCccEEEeecCCCCCCCcccchHhhccCcccceEEEeCCCCccCchhcCCCCCCcEE
Q 037304          141 ENVKRFTAHGNLNDF-AFLDHFDSFLHSLLHLTSGSHYLNPTYCEKICKMFKFLRVLDLGSLVLIRYPFEIENLFLLRYL  219 (257)
Q Consensus       141 ~~~r~L~~~~~~~~~-~~~~~~~~~Lrsl~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~l~~lp~~i~~L~~L~~L  219 (257)
                      ..++.|.+.++.... +....++ +|++|.+.++....     . +.+..+++|+.|++++|.+..+|. +..+++|++|
T Consensus        66 ~~L~~L~l~~n~i~~~~~~~~l~-~L~~L~L~~n~i~~-----~-~~~~~l~~L~~L~l~~n~i~~~~~-~~~l~~L~~L  137 (347)
T 4fmz_A           66 TNLEYLNLNGNQITDISPLSNLV-KLTNLYIGTNKITD-----I-SALQNLTNLRELYLNEDNISDISP-LANLTKMYSL  137 (347)
T ss_dssp             TTCCEEECCSSCCCCCGGGTTCT-TCCEEECCSSCCCC-----C-GGGTTCTTCSEEECTTSCCCCCGG-GTTCTTCCEE
T ss_pred             CCccEEEccCCccccchhhhcCC-cCCEEEccCCcccC-----c-hHHcCCCcCCEEECcCCcccCchh-hccCCceeEE
Confidence            455555555544332 2344455 56666655554321     1 235556666666666666655554 5566666666


Q ss_pred             EccCCCccccchhHHhcCccccEeeccCCCCCcC
Q 037304          220 HLNIPSLKSLPSSLLNSLLNLYTLDKPFSYIDHT  253 (257)
Q Consensus       220 ~l~~~~l~~lP~~i~~~L~~L~~L~l~~~~l~~l  253 (257)
                      ++++|.....+..+ +.+++|++|++++|.+..+
T Consensus       138 ~l~~n~~~~~~~~~-~~l~~L~~L~l~~~~~~~~  170 (347)
T 4fmz_A          138 NLGANHNLSDLSPL-SNMTGLNYLTVTESKVKDV  170 (347)
T ss_dssp             ECTTCTTCCCCGGG-TTCTTCCEEECCSSCCCCC
T ss_pred             ECCCCCCcccccch-hhCCCCcEEEecCCCcCCc
Confidence            66666432233335 6666666666666655444

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=98.69  E-value=3.3e-08  Score=89.85  Aligned_cols=87  Identities=22%  Similarity=0.007  Sum_probs=76.2

Q ss_pred             CCCccEEEeecCCCCCCCcccchHhhccCcccceEEEeCCCCccCc-hhcCCCCCCcEEEccCCCccccchhHHhcCccc
Q 037304          162 DSFLHSLLHLTSGSHYLNPTYCEKICKMFKFLRVLDLGSLVLIRYP-FEIENLFLLRYLHLNIPSLKSLPSSLLNSLLNL  240 (257)
Q Consensus       162 ~~~Lrsl~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~l~~lp-~~i~~L~~L~~L~l~~~~l~~lP~~i~~~L~~L  240 (257)
                      + ++++|.+.++...    ...+..|.++++|++|++++|.+..+| ..++.+++|++|++++|.+..+|+..|+++++|
T Consensus        26 ~-~L~~L~Ls~n~l~----~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L  100 (549)
T 2z81_A           26 A-AMKSLDLSFNKIT----YIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSL  100 (549)
T ss_dssp             T-TCCEEECCSSCCC----EECSSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCSCCHHHHTTCTTC
T ss_pred             C-CccEEECcCCccC----ccChhhhhcCCcccEEECCCCCcCccChhhccccccCCEEECCCCccCccCHHHhccCCCC
Confidence            5 8999999988753    455678999999999999999998765 789999999999999999998888733999999


Q ss_pred             cEeeccCCCCCcC
Q 037304          241 YTLDKPFSYIDHT  253 (257)
Q Consensus       241 ~~L~l~~~~l~~l  253 (257)
                      ++|++++|.+..+
T Consensus       101 ~~L~Ls~n~l~~~  113 (549)
T 2z81_A          101 KYLNLMGNPYQTL  113 (549)
T ss_dssp             CEEECTTCCCSSS
T ss_pred             cEEECCCCccccc
Confidence            9999999998744

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=98.67  E-value=4.5e-08  Score=83.40  Aligned_cols=104  Identities=13%  Similarity=0.119  Sum_probs=83.3

Q ss_pred             CcEEEEEEeCCCCcc---ccccCCCCCccEEEeecCCCCCCCcccchHhhccCcccceEEEeCCCCccCchhcCCCCCCc
Q 037304          141 ENVKRFTAHGNLNDF---AFLDHFDSFLHSLLHLTSGSHYLNPTYCEKICKMFKFLRVLDLGSLVLIRYPFEIENLFLLR  217 (257)
Q Consensus       141 ~~~r~L~~~~~~~~~---~~~~~~~~~Lrsl~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~l~~lp~~i~~L~~L~  217 (257)
                      ..++.|.+..+....   .....++ +|++|.+.++...    ...+..|..+++|+.|++++|.+..+|..+.  ++|+
T Consensus        52 ~~l~~L~L~~n~i~~~~~~~~~~l~-~L~~L~L~~n~l~----~~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~--~~L~  124 (330)
T 1xku_A           52 PDTALLDLQNNKITEIKDGDFKNLK-NLHTLILINNKIS----KISPGAFAPLVKLERLYLSKNQLKELPEKMP--KTLQ  124 (330)
T ss_dssp             TTCCEEECCSSCCCCBCTTTTTTCT-TCCEEECCSSCCC----CBCTTTTTTCTTCCEEECCSSCCSBCCSSCC--TTCC
T ss_pred             CCCeEEECCCCcCCEeChhhhccCC-CCCEEECCCCcCC----eeCHHHhcCCCCCCEEECCCCcCCccChhhc--cccc
Confidence            567788887776543   2356677 8999998887653    4556788899999999999999988887766  6899


Q ss_pred             EEEccCCCccccchhHHhcCccccEeeccCCCCC
Q 037304          218 YLHLNIPSLKSLPSSLLNSLLNLYTLDKPFSYID  251 (257)
Q Consensus       218 ~L~l~~~~l~~lP~~i~~~L~~L~~L~l~~~~l~  251 (257)
                      +|++++|.+..+|...|+++++|++|++++|.+.
T Consensus       125 ~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~  158 (330)
T 1xku_A          125 ELRVHENEITKVRKSVFNGLNQMIVVELGTNPLK  158 (330)
T ss_dssp             EEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCC
T ss_pred             EEECCCCcccccCHhHhcCCccccEEECCCCcCC
Confidence            9999999988887765599999999999998865

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=98.66  E-value=1.7e-08  Score=85.49  Aligned_cols=113  Identities=14%  Similarity=0.015  Sum_probs=62.5

Q ss_pred             CcEEEEEEeCCCCcc---ccccCCCCCccEEEeecCCCCCCCcccc-hHhhccCcccceEEEeCCCCccCchh----cCC
Q 037304          141 ENVKRFTAHGNLNDF---AFLDHFDSFLHSLLHLTSGSHYLNPTYC-EKICKMFKFLRVLDLGSLVLIRYPFE----IEN  212 (257)
Q Consensus       141 ~~~r~L~~~~~~~~~---~~~~~~~~~Lrsl~l~~~~~~~~~~~~~-~~~~~~l~~Lr~L~L~~~~l~~lp~~----i~~  212 (257)
                      ..+++|.+..+....   .....++ +|++|.+.++.... ..... +..+..+++|++|++++|.++.+|..    ++.
T Consensus       145 ~~L~~L~Ls~n~l~~~~~~~~~~l~-~L~~L~Ls~N~l~~-~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~~  222 (310)
T 4glp_A          145 PGLKVLSIAQAHSPAFSCEQVRAFP-ALTSLDLSDNPGLG-ERGLMAALCPHKFPAIQNLALRNTGMETPTGVCAALAAA  222 (310)
T ss_dssp             SCCCEEEEECCSSCCCCTTSCCCCT-TCCEEECCSCTTCH-HHHHHTTSCTTSSCCCCSCBCCSSCCCCHHHHHHHHHHH
T ss_pred             cCCCEEEeeCCCcchhhHHHhccCC-CCCEEECCCCCCcc-chhhhHHHhhhcCCCCCEEECCCCCCCchHHHHHHHHhc
Confidence            345555555554432   1223455 66666666554310 00011 11234566677777777766554432    355


Q ss_pred             CCCCcEEEccCCCcccc-chhHHhcC---ccccEeeccCCCCCcCCCC
Q 037304          213 LFLLRYLHLNIPSLKSL-PSSLLNSL---LNLYTLDKPFSYIDHTVDE  256 (257)
Q Consensus       213 L~~L~~L~l~~~~l~~l-P~~i~~~L---~~L~~L~l~~~~l~~lP~~  256 (257)
                      +++|++|++++|.+..+ |+.+ +.+   ++|++|++++|++.++|..
T Consensus       223 l~~L~~L~Ls~N~l~~~~p~~~-~~~~~~~~L~~L~Ls~N~l~~lp~~  269 (310)
T 4glp_A          223 GVQPHSLDLSHNSLRATVNPSA-PRCMWSSALNSLNLSFAGLEQVPKG  269 (310)
T ss_dssp             TCCCSSEECTTSCCCCCCCSCC-SSCCCCTTCCCEECCSSCCCSCCSC
T ss_pred             CCCCCEEECCCCCCCccchhhH-HhccCcCcCCEEECCCCCCCchhhh
Confidence            66777777777776655 6666 555   4777777777777676654

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=98.66  E-value=2.2e-08  Score=90.26  Aligned_cols=109  Identities=13%  Similarity=-0.027  Sum_probs=83.3

Q ss_pred             CcEEEEEEeCCCCccccccCCCCCccEEEeecCCCCCCCcccchHhhccCcccceEEEeCCCCcc-CchhcC-CCCCCcE
Q 037304          141 ENVKRFTAHGNLNDFAFLDHFDSFLHSLLHLTSGSHYLNPTYCEKICKMFKFLRVLDLGSLVLIR-YPFEIE-NLFLLRY  218 (257)
Q Consensus       141 ~~~r~L~~~~~~~~~~~~~~~~~~Lrsl~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~l~~-lp~~i~-~L~~L~~  218 (257)
                      ..++.|.+..+.........++ +|+.|.+.++...    ...+..+..+++|+.|+|++|.+.. .|..+. .+++|++
T Consensus        99 ~~L~~L~L~~N~l~~~~~~~l~-~L~~L~L~~N~l~----~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~  173 (487)
T 3oja_A           99 PSIETLHAANNNISRVSCSRGQ-GKKNIYLANNKIT----MLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEH  173 (487)
T ss_dssp             TTCCEEECCSSCCCCEEECCCS-SCEEEECCSSCCC----SGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCE
T ss_pred             CCcCEEECcCCcCCCCCccccC-CCCEEECCCCCCC----CCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccE
Confidence            4556666666555443334567 8888888877653    4556678889999999999999885 466665 7899999


Q ss_pred             EEccCCCccccchhHHhcCccccEeeccCCCCCcCCCC
Q 037304          219 LHLNIPSLKSLPSSLLNSLLNLYTLDKPFSYIDHTVDE  256 (257)
Q Consensus       219 L~l~~~~l~~lP~~i~~~L~~L~~L~l~~~~l~~lP~~  256 (257)
                      |+|++|.++.+|...  .+++|++|++++|.+..+|++
T Consensus       174 L~Ls~N~l~~~~~~~--~l~~L~~L~Ls~N~l~~~~~~  209 (487)
T 3oja_A          174 LNLQYNFIYDVKGQV--VFAKLKTLDLSSNKLAFMGPE  209 (487)
T ss_dssp             EECTTSCCCEEECCC--CCTTCCEEECCSSCCCEECGG
T ss_pred             EecCCCccccccccc--cCCCCCEEECCCCCCCCCCHh
Confidence            999999999887654  699999999999998887753

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A

Probab=98.66  E-value=6.1e-08  Score=89.62  Aligned_cols=104  Identities=19%  Similarity=0.081  Sum_probs=89.7

Q ss_pred             CcEEEEEEeCCCCcc-ccccCCCCCccEEEeecCCCCCCCcccchHhhccCcccceEEEeCCCCccCchhcCCCCCCcEE
Q 037304          141 ENVKRFTAHGNLNDF-AFLDHFDSFLHSLLHLTSGSHYLNPTYCEKICKMFKFLRVLDLGSLVLIRYPFEIENLFLLRYL  219 (257)
Q Consensus       141 ~~~r~L~~~~~~~~~-~~~~~~~~~Lrsl~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~l~~lp~~i~~L~~L~~L  219 (257)
                      ..+++|.+..+.... +....++ +|+.|.+.++....     + ..+..+++|+.|+|++|.+..+ ..++.+++|+.|
T Consensus        87 ~~L~~L~Ls~N~l~~l~~l~~l~-~L~~L~Ls~N~l~~-----l-~~l~~l~~L~~L~Ls~N~l~~l-~~l~~l~~L~~L  158 (605)
T 1m9s_A           87 KNLGWLFLDENKIKDLSSLKDLK-KLKSLSLEHNGISD-----I-NGLVHLPQLESLYLGNNKITDI-TVLSRLTKLDTL  158 (605)
T ss_dssp             TTCCEEECCSSCCCCCTTSTTCT-TCCEEECTTSCCCC-----C-GGGGGCTTCSEEECCSSCCCCC-GGGGSCTTCSEE
T ss_pred             CCCCEEECcCCCCCCChhhccCC-CCCEEEecCCCCCC-----C-ccccCCCccCEEECCCCccCCc-hhhcccCCCCEE
Confidence            678899988877554 5667788 99999999887642     2 4588999999999999999988 679999999999


Q ss_pred             EccCCCccccchhHHhcCccccEeeccCCCCCcCC
Q 037304          220 HLNIPSLKSLPSSLLNSLLNLYTLDKPFSYIDHTV  254 (257)
Q Consensus       220 ~l~~~~l~~lP~~i~~~L~~L~~L~l~~~~l~~lP  254 (257)
                      +|++|.+..+++ + +.+++|+.|+|++|.+..+|
T Consensus       159 ~Ls~N~l~~~~~-l-~~l~~L~~L~Ls~N~i~~l~  191 (605)
T 1m9s_A          159 SLEDNQISDIVP-L-AGLTKLQNLYLSKNHISDLR  191 (605)
T ss_dssp             ECCSSCCCCCGG-G-TTCTTCCEEECCSSCCCBCG
T ss_pred             ECcCCcCCCchh-h-ccCCCCCEEECcCCCCCCCh
Confidence            999999998877 7 99999999999999987775

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=98.65  E-value=5.2e-08  Score=82.53  Aligned_cols=90  Identities=23%  Similarity=0.255  Sum_probs=46.5

Q ss_pred             CCCCCccEEEeecCCCCCCCcccchHhhccCcccceEEEeCCCCccCc--hhcCCCCCCcEEEccCCCccccchhHHhcC
Q 037304          160 HFDSFLHSLLHLTSGSHYLNPTYCEKICKMFKFLRVLDLGSLVLIRYP--FEIENLFLLRYLHLNIPSLKSLPSSLLNSL  237 (257)
Q Consensus       160 ~~~~~Lrsl~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~l~~lp--~~i~~L~~L~~L~l~~~~l~~lP~~i~~~L  237 (257)
                      .++ +|+.|.+.++.... ........+..+++|+.|++++|.+...+  ..+..+++|++|++++|.++.+|..+ .  
T Consensus       199 ~l~-~L~~L~L~~N~l~~-~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~~ip~~~-~--  273 (312)
T 1wwl_A          199 KFP-TLQVLALRNAGMET-PSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLKQVPKGL-P--  273 (312)
T ss_dssp             SCT-TCCEEECTTSCCCC-HHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCCCTTCCEEECTTSCCSSCCSSC-C--
T ss_pred             cCC-CCCEEECCCCcCcc-hHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhhhcCCCCEEECCCCccChhhhhc-c--
Confidence            344 55555555444320 01122233445556666666666655433  33444556666666666666666655 3  


Q ss_pred             ccccEeeccCCCCCcCC
Q 037304          238 LNLYTLDKPFSYIDHTV  254 (257)
Q Consensus       238 ~~L~~L~l~~~~l~~lP  254 (257)
                      ++|++|++++|++..+|
T Consensus       274 ~~L~~L~Ls~N~l~~~p  290 (312)
T 1wwl_A          274 AKLSVLDLSYNRLDRNP  290 (312)
T ss_dssp             SEEEEEECCSSCCCSCC
T ss_pred             CCceEEECCCCCCCCCh
Confidence            56666666666655554

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=98.64  E-value=5.1e-08  Score=80.69  Aligned_cols=103  Identities=14%  Similarity=0.030  Sum_probs=86.0

Q ss_pred             CcEEEEEEeCCCCcc-ccccCCCCCccEEEeecCCCCCCCcccchHhhccCcccceEEEeCCCCccCchhcCCCCCCcEE
Q 037304          141 ENVKRFTAHGNLNDF-AFLDHFDSFLHSLLHLTSGSHYLNPTYCEKICKMFKFLRVLDLGSLVLIRYPFEIENLFLLRYL  219 (257)
Q Consensus       141 ~~~r~L~~~~~~~~~-~~~~~~~~~Lrsl~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~l~~lp~~i~~L~~L~~L  219 (257)
                      ..++.|.+..+.... +.... . +|+.|.+.++....     . ..+..+++|+.|++++|.++.+| .++.+++|++|
T Consensus        85 ~~L~~L~L~~N~l~~l~~~~~-~-~L~~L~L~~N~l~~-----~-~~l~~l~~L~~L~Ls~N~i~~~~-~l~~l~~L~~L  155 (263)
T 1xeu_A           85 TKLEELSVNRNRLKNLNGIPS-A-CLSRLFLDNNELRD-----T-DSLIHLKNLEILSIRNNKLKSIV-MLGFLSKLEVL  155 (263)
T ss_dssp             SSCCEEECCSSCCSCCTTCCC-S-SCCEEECCSSCCSB-----S-GGGTTCTTCCEEECTTSCCCBCG-GGGGCTTCCEE
T ss_pred             CCCCEEECCCCccCCcCcccc-C-cccEEEccCCccCC-----C-hhhcCcccccEEECCCCcCCCCh-HHccCCCCCEE
Confidence            678888888887654 33333 7 99999999987642     2 35889999999999999999887 68999999999


Q ss_pred             EccCCCccccchhHHhcCccccEeeccCCCCCcCC
Q 037304          220 HLNIPSLKSLPSSLLNSLLNLYTLDKPFSYIDHTV  254 (257)
Q Consensus       220 ~l~~~~l~~lP~~i~~~L~~L~~L~l~~~~l~~lP  254 (257)
                      ++++|.+..+ ..+ +.+++|++|++++|.+...|
T Consensus       156 ~L~~N~i~~~-~~l-~~l~~L~~L~l~~N~~~~~~  188 (263)
T 1xeu_A          156 DLHGNEITNT-GGL-TRLKKVNWIDLTGQKCVNEP  188 (263)
T ss_dssp             ECTTSCCCBC-TTS-TTCCCCCEEEEEEEEEECCC
T ss_pred             ECCCCcCcch-HHh-ccCCCCCEEeCCCCcccCCc
Confidence            9999999988 667 99999999999999866555

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=98.64  E-value=7.3e-08  Score=89.92  Aligned_cols=67  Identities=27%  Similarity=0.426  Sum_probs=30.7

Q ss_pred             hccCcccceEEEeCCCCccCch-hcCCCCCCcEEEccCCCccccchhHHhcCccccEeeccCCCCCcC
Q 037304          187 CKMFKFLRVLDLGSLVLIRYPF-EIENLFLLRYLHLNIPSLKSLPSSLLNSLLNLYTLDKPFSYIDHT  253 (257)
Q Consensus       187 ~~~l~~Lr~L~L~~~~l~~lp~-~i~~L~~L~~L~l~~~~l~~lP~~i~~~L~~L~~L~l~~~~l~~l  253 (257)
                      |..+++|++|++++|.+..+|. .++.+++|++|++++|.++.+|...|..+++|++|++++|++..+
T Consensus       532 ~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~  599 (680)
T 1ziw_A          532 LKGLSHLHILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSV  599 (680)
T ss_dssp             TTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCCCBC
T ss_pred             hcCCCCCCEEECCCCCCCCCCHHHcccccCcceeECCCCCCCcCCHhHhCCCCCCCEEECCCCcCCcc
Confidence            3344444444444444444442 244444444444444444444444334444555555554444443

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=98.64  E-value=3.7e-08  Score=83.41  Aligned_cols=113  Identities=16%  Similarity=0.039  Sum_probs=79.1

Q ss_pred             CcEEEEEEeCCCCcc---ccccCCCCCccEEEeecCCCCCCCcccchHhh--ccCcccceEEEeCCCCccCc---hh-cC
Q 037304          141 ENVKRFTAHGNLNDF---AFLDHFDSFLHSLLHLTSGSHYLNPTYCEKIC--KMFKFLRVLDLGSLVLIRYP---FE-IE  211 (257)
Q Consensus       141 ~~~r~L~~~~~~~~~---~~~~~~~~~Lrsl~l~~~~~~~~~~~~~~~~~--~~l~~Lr~L~L~~~~l~~lp---~~-i~  211 (257)
                      ..+++|.+..+....   .....++ +|+.|.+.++....  ....+..+  ..+++|+.|++++|.+..+|   .. +.
T Consensus       149 ~~L~~L~L~~N~l~~~~~~~~~~l~-~L~~L~Ls~N~l~~--~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~  225 (312)
T 1wwl_A          149 PGLKVLSIAQAHSLNFSCEQVRVFP-ALSTLDLSDNPELG--ERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAA  225 (312)
T ss_dssp             TTCCEEEEESCSCCCCCTTTCCCCS-SCCEEECCSCTTCH--HHHHHHHSCTTSCTTCCEEECTTSCCCCHHHHHHHHHH
T ss_pred             CCCcEEEeeCCCCccchHHHhccCC-CCCEEECCCCCcCc--chHHHHHHHhccCCCCCEEECCCCcCcchHHHHHHHHh
Confidence            467777777776543   2345677 88898888876420  00012233  78889999999999888443   22 35


Q ss_pred             CCCCCcEEEccCCCccccc--hhHHhcCccccEeeccCCCCCcCCCCC
Q 037304          212 NLFLLRYLHLNIPSLKSLP--SSLLNSLLNLYTLDKPFSYIDHTVDEF  257 (257)
Q Consensus       212 ~L~~L~~L~l~~~~l~~lP--~~i~~~L~~L~~L~l~~~~l~~lP~~i  257 (257)
                      .+++|++|++++|.+...+  ..+ ..+++|++|++++|.+.++|..+
T Consensus       226 ~l~~L~~L~Ls~N~l~~~~~~~~~-~~l~~L~~L~Ls~N~l~~ip~~~  272 (312)
T 1wwl_A          226 ARVQLQGLDLSHNSLRDAAGAPSC-DWPSQLNSLNLSFTGLKQVPKGL  272 (312)
T ss_dssp             TTCCCSEEECTTSCCCSSCCCSCC-CCCTTCCEEECTTSCCSSCCSSC
T ss_pred             cCCCCCEEECCCCcCCcccchhhh-hhcCCCCEEECCCCccChhhhhc
Confidence            6788999999999887655  334 66889999999999888888753

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=98.63  E-value=1.3e-07  Score=80.90  Aligned_cols=105  Identities=22%  Similarity=0.120  Sum_probs=69.5

Q ss_pred             CcEEEEEEeCCCCcc-ccccCCCCCccEEEeecCCCCCCCcccchHhhccCcccceEEEeCCCCccCchhcCCCCCCcEE
Q 037304          141 ENVKRFTAHGNLNDF-AFLDHFDSFLHSLLHLTSGSHYLNPTYCEKICKMFKFLRVLDLGSLVLIRYPFEIENLFLLRYL  219 (257)
Q Consensus       141 ~~~r~L~~~~~~~~~-~~~~~~~~~Lrsl~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~l~~lp~~i~~L~~L~~L  219 (257)
                      ..++.|.+.++.... +....++ +|+.|.+.++....    .  ..+..+++|+.|++++|.+..+| .++.+++|++|
T Consensus       221 ~~L~~L~l~~n~l~~~~~~~~l~-~L~~L~l~~n~l~~----~--~~~~~l~~L~~L~l~~n~l~~~~-~~~~l~~L~~L  292 (347)
T 4fmz_A          221 TRLNSLKIGNNKITDLSPLANLS-QLTWLEIGTNQISD----I--NAVKDLTKLKMLNVGSNQISDIS-VLNNLSQLNSL  292 (347)
T ss_dssp             TTCCEEECCSSCCCCCGGGTTCT-TCCEEECCSSCCCC----C--GGGTTCTTCCEEECCSSCCCCCG-GGGGCTTCSEE
T ss_pred             CcCCEEEccCCccCCCcchhcCC-CCCEEECCCCccCC----C--hhHhcCCCcCEEEccCCccCCCh-hhcCCCCCCEE
Confidence            455666665554432 3345556 67777776665431    1  35677777888888888777664 46777888888


Q ss_pred             EccCCCccccc-hhHHhcCccccEeeccCCCCCcCC
Q 037304          220 HLNIPSLKSLP-SSLLNSLLNLYTLDKPFSYIDHTV  254 (257)
Q Consensus       220 ~l~~~~l~~lP-~~i~~~L~~L~~L~l~~~~l~~lP  254 (257)
                      ++++|.+...+ ..+ +.+++|++|++++|.+..+|
T Consensus       293 ~L~~n~l~~~~~~~l-~~l~~L~~L~L~~n~l~~~~  327 (347)
T 4fmz_A          293 FLNNNQLGNEDMEVI-GGLTNLTTLFLSQNHITDIR  327 (347)
T ss_dssp             ECCSSCCCGGGHHHH-HTCTTCSEEECCSSSCCCCG
T ss_pred             ECcCCcCCCcChhHh-hccccCCEEEccCCcccccc
Confidence            88888776544 445 78888888888888776654

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}

Probab=98.61  E-value=6.8e-08  Score=81.98  Aligned_cols=103  Identities=21%  Similarity=0.039  Sum_probs=85.1

Q ss_pred             CcEEEEEEeCCCCcc--c-cc-cCCCCCccEEEeecCCCCCCCcccchHhhccCcccceEEEeCCCCccCchhcCCCCCC
Q 037304          141 ENVKRFTAHGNLNDF--A-FL-DHFDSFLHSLLHLTSGSHYLNPTYCEKICKMFKFLRVLDLGSLVLIRYPFEIENLFLL  216 (257)
Q Consensus       141 ~~~r~L~~~~~~~~~--~-~~-~~~~~~Lrsl~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~l~~lp~~i~~L~~L  216 (257)
                      ..++.|.+..+....  + .. ..++ +|+.|.+.++...    ..  .....+++|+.|++++|.+..+|..+..+++|
T Consensus       144 ~~L~~L~Ls~N~l~~~~~~~~~~~l~-~L~~L~L~~N~l~----~~--~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~L  216 (317)
T 3o53_A          144 SRVQYLDLKLNEIDTVNFAELAASSD-TLEHLNLQYNFIY----DV--KGQVVFAKLKTLDLSSNKLAFMGPEFQSAAGV  216 (317)
T ss_dssp             SSEEEEECTTSCCCEEEGGGGGGGTT-TCCEEECTTSCCC----EE--ECCCCCTTCCEEECCSSCCCEECGGGGGGTTC
T ss_pred             CCCCEEECCCCCCCcccHHHHhhccC-cCCEEECCCCcCc----cc--ccccccccCCEEECCCCcCCcchhhhcccCcc
Confidence            678999988877653  2 22 3567 9999999988764    22  22335889999999999999998889999999


Q ss_pred             cEEEccCCCccccchhHHhcCccccEeeccCCCCC
Q 037304          217 RYLHLNIPSLKSLPSSLLNSLLNLYTLDKPFSYID  251 (257)
Q Consensus       217 ~~L~l~~~~l~~lP~~i~~~L~~L~~L~l~~~~l~  251 (257)
                      ++|++++|.++.+|..+ +.+++|+.|++++|.+.
T Consensus       217 ~~L~L~~N~l~~l~~~~-~~l~~L~~L~l~~N~~~  250 (317)
T 3o53_A          217 TWISLRNNKLVLIEKAL-RFSQNLEHFDLRGNGFH  250 (317)
T ss_dssp             SEEECTTSCCCEECTTC-CCCTTCCEEECTTCCCB
T ss_pred             cEEECcCCcccchhhHh-hcCCCCCEEEccCCCcc
Confidence            99999999999999998 99999999999999865

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=98.59  E-value=4e-09  Score=83.46  Aligned_cols=89  Identities=19%  Similarity=0.114  Sum_probs=74.5

Q ss_pred             cccCCCCCccEEEeecCCCCCCCcccchHhhccCcccceEEEeCCCCccCchhcCCCCCCcEEEccCCCccccchhHHhc
Q 037304          157 FLDHFDSFLHSLLHLTSGSHYLNPTYCEKICKMFKFLRVLDLGSLVLIRYPFEIENLFLLRYLHLNIPSLKSLPSSLLNS  236 (257)
Q Consensus       157 ~~~~~~~~Lrsl~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~l~~lp~~i~~L~~L~~L~l~~~~l~~lP~~i~~~  236 (257)
                      ....++ +|+.|.+.++...    . .+ .+..+++|+.|++++|.+..+|..++.+++|++|++++|.++.+| .+ ++
T Consensus        43 ~~~~l~-~L~~L~ls~n~l~----~-l~-~~~~l~~L~~L~l~~n~l~~l~~~~~~~~~L~~L~L~~N~l~~l~-~~-~~  113 (198)
T 1ds9_A           43 TLSTLK-ACKHLALSTNNIE----K-IS-SLSGMENLRILSLGRNLIKKIENLDAVADTLEELWISYNQIASLS-GI-EK  113 (198)
T ss_dssp             HHHHTT-TCSEEECSEEEES----C-CC-CHHHHTTCCEEEEEEEEECSCSSHHHHHHHCSEEEEEEEECCCHH-HH-HH
T ss_pred             HHhcCC-CCCEEECCCCCCc----c-cc-ccccCCCCCEEECCCCCcccccchhhcCCcCCEEECcCCcCCcCC-cc-cc
Confidence            345677 8999999887653    2 33 778899999999999999999988888899999999999999888 67 89


Q ss_pred             CccccEeeccCCCCCcCC
Q 037304          237 LLNLYTLDKPFSYIDHTV  254 (257)
Q Consensus       237 L~~L~~L~l~~~~l~~lP  254 (257)
                      +++|++|++++|.+..+|
T Consensus       114 l~~L~~L~l~~N~i~~~~  131 (198)
T 1ds9_A          114 LVNLRVLYMSNNKITNWG  131 (198)
T ss_dssp             HHHSSEEEESEEECCCHH
T ss_pred             CCCCCEEECCCCcCCchh
Confidence            999999999999877654

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}

Probab=98.58  E-value=1.3e-07  Score=84.44  Aligned_cols=98  Identities=15%  Similarity=0.104  Sum_probs=43.0

Q ss_pred             CcEEEEEEeCCCCcc-ccccCCCCCccEEEeecCCCCCCCcccchHhhccCcccceEEEeCCCCccCchhcCCCCCCcEE
Q 037304          141 ENVKRFTAHGNLNDF-AFLDHFDSFLHSLLHLTSGSHYLNPTYCEKICKMFKFLRVLDLGSLVLIRYPFEIENLFLLRYL  219 (257)
Q Consensus       141 ~~~r~L~~~~~~~~~-~~~~~~~~~Lrsl~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~l~~lp~~i~~L~~L~~L  219 (257)
                      ..++.|.+..+.... +....++ +|+.|.+.++....    . +  +..+++|++|++++|.+..+|  ++.+++|++|
T Consensus        42 ~~L~~L~Ls~n~l~~~~~l~~l~-~L~~L~Ls~n~l~~----~-~--~~~l~~L~~L~Ls~N~l~~~~--~~~l~~L~~L  111 (457)
T 3bz5_A           42 ATLTSLDCHNSSITDMTGIEKLT-GLTKLICTSNNITT----L-D--LSQNTNLTYLACDSNKLTNLD--VTPLTKLTYL  111 (457)
T ss_dssp             TTCCEEECCSSCCCCCTTGGGCT-TCSEEECCSSCCSC----C-C--CTTCTTCSEEECCSSCCSCCC--CTTCTTCCEE
T ss_pred             CCCCEEEccCCCcccChhhcccC-CCCEEEccCCcCCe----E-c--cccCCCCCEEECcCCCCceee--cCCCCcCCEE
Confidence            344444444433221 2333444 55555554444321    1 1  344444455555544444443  4444444444


Q ss_pred             EccCCCccccchhHHhcCccccEeeccCCCCC
Q 037304          220 HLNIPSLKSLPSSLLNSLLNLYTLDKPFSYID  251 (257)
Q Consensus       220 ~l~~~~l~~lP~~i~~~L~~L~~L~l~~~~l~  251 (257)
                      ++++|.++.+|  + +++++|++|++++|.+.
T Consensus       112 ~L~~N~l~~l~--~-~~l~~L~~L~l~~N~l~  140 (457)
T 3bz5_A          112 NCDTNKLTKLD--V-SQNPLLTYLNCARNTLT  140 (457)
T ss_dssp             ECCSSCCSCCC--C-TTCTTCCEEECTTSCCS
T ss_pred             ECCCCcCCeec--C-CCCCcCCEEECCCCccc
Confidence            44444444443  3 44444444444444443

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=98.54  E-value=1.1e-07  Score=87.46  Aligned_cols=68  Identities=19%  Similarity=0.017  Sum_probs=31.7

Q ss_pred             hhccCcccceEEEeCCCCccCc-hhcCCCCCCcEEEccCCCccccchhHHhcCcccc--EeeccCCCCCcC
Q 037304          186 ICKMFKFLRVLDLGSLVLIRYP-FEIENLFLLRYLHLNIPSLKSLPSSLLNSLLNLY--TLDKPFSYIDHT  253 (257)
Q Consensus       186 ~~~~l~~Lr~L~L~~~~l~~lp-~~i~~L~~L~~L~l~~~~l~~lP~~i~~~L~~L~--~L~l~~~~l~~l  253 (257)
                      .+.++++|+.|++++|.+..++ ..+..+++|++|++++|.+..++...|+.+.+|+  +|++++|.+..+
T Consensus       124 ~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~l~L~l~~n~l~~~  194 (606)
T 3t6q_A          124 PLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGNDIAGI  194 (606)
T ss_dssp             CCTTCTTCCEEECCSSCCCCCCCCTTCCCTTCCEEECCSSCCCEECHHHHHTTTTCCSEEEECTTCCCCEE
T ss_pred             hhccCCcccEEECCCCcccccCcccccCCcccCEEEcccCcccccChhhhhhhcccceeEEecCCCccCcc
Confidence            3444555555555555544331 2222255555555555555444322225555555  555555554443

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=98.52  E-value=2.3e-07  Score=88.94  Aligned_cols=109  Identities=15%  Similarity=0.097  Sum_probs=83.2

Q ss_pred             CcEEEEEEeCCCCcc---ccccCCCCCccEEEeecCCCCCCCcccchHhhccCcccceEEEeCCCCccC-chhcCCCCCC
Q 037304          141 ENVKRFTAHGNLNDF---AFLDHFDSFLHSLLHLTSGSHYLNPTYCEKICKMFKFLRVLDLGSLVLIRY-PFEIENLFLL  216 (257)
Q Consensus       141 ~~~r~L~~~~~~~~~---~~~~~~~~~Lrsl~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~l~~l-p~~i~~L~~L  216 (257)
                      ..++.|.+..+....   .....++ +|+.|.+.++...    ...+..|..+++|+.|++++|.+..+ |..++.+++|
T Consensus       266 ~~L~~L~Ls~n~l~~~~~~~~~~l~-~L~~L~L~~n~i~----~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L  340 (844)
T 3j0a_A          266 SSVRHLDLSHGFVFSLNSRVFETLK-DLKVLNLAYNKIN----KIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKV  340 (844)
T ss_dssp             SCCCEEECTTCCCCEECSCCSSSCC-CCCEEEEESCCCC----EECTTTTTTCSSCCEEEEESCCCSCCCSCSCSSCTTC
T ss_pred             CCccEEECCCCcccccChhhhhcCC-CCCEEECCCCcCC----CCChHHhcCCCCCCEEECCCCCCCccCHHHhcCCCCC
Confidence            356777776655432   2345667 8888888887653    45567788899999999999998766 6788899999


Q ss_pred             cEEEccCCCccccchhHHhcCccccEeeccCCCCCcCC
Q 037304          217 RYLHLNIPSLKSLPSSLLNSLLNLYTLDKPFSYIDHTV  254 (257)
Q Consensus       217 ~~L~l~~~~l~~lP~~i~~~L~~L~~L~l~~~~l~~lP  254 (257)
                      ++|++++|.+..+|...|+.+++|++|++++|.+..+|
T Consensus       341 ~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~i~  378 (844)
T 3j0a_A          341 AYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALTTIH  378 (844)
T ss_dssp             CEEECCSCCCCCCCSSCSCSCCCCCEEEEETCCSCCCS
T ss_pred             CEEECCCCCCCccChhhhcCCCCCCEEECCCCCCCccc
Confidence            99999999888887654388899999999988876654

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=98.52  E-value=2.1e-09  Score=85.11  Aligned_cols=103  Identities=17%  Similarity=0.062  Sum_probs=83.0

Q ss_pred             CcEEEEEEeCCCCc-cccccCCCCCccEEEeecCCCCCCCcccchHhhccCcccceEEEeCCCCccCchhcCCCCCCcEE
Q 037304          141 ENVKRFTAHGNLND-FAFLDHFDSFLHSLLHLTSGSHYLNPTYCEKICKMFKFLRVLDLGSLVLIRYPFEIENLFLLRYL  219 (257)
Q Consensus       141 ~~~r~L~~~~~~~~-~~~~~~~~~~Lrsl~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~l~~lp~~i~~L~~L~~L  219 (257)
                      ..++.|.+..+... ++....++ +|+.|.+.++...     .++..+..+++|+.|++++|.+..+| .++.+++|++|
T Consensus        48 ~~L~~L~ls~n~l~~l~~~~~l~-~L~~L~l~~n~l~-----~l~~~~~~~~~L~~L~L~~N~l~~l~-~~~~l~~L~~L  120 (198)
T 1ds9_A           48 KACKHLALSTNNIEKISSLSGME-NLRILSLGRNLIK-----KIENLDAVADTLEELWISYNQIASLS-GIEKLVNLRVL  120 (198)
T ss_dssp             TTCSEEECSEEEESCCCCHHHHT-TCCEEEEEEEEEC-----SCSSHHHHHHHCSEEEEEEEECCCHH-HHHHHHHSSEE
T ss_pred             CCCCEEECCCCCCccccccccCC-CCCEEECCCCCcc-----cccchhhcCCcCCEEECcCCcCCcCC-ccccCCCCCEE
Confidence            45666766555432 24556677 9999999988653     24567777899999999999999887 68899999999


Q ss_pred             EccCCCccccch--hHHhcCccccEeeccCCCCC
Q 037304          220 HLNIPSLKSLPS--SLLNSLLNLYTLDKPFSYID  251 (257)
Q Consensus       220 ~l~~~~l~~lP~--~i~~~L~~L~~L~l~~~~l~  251 (257)
                      ++++|.+..+|.  .+ +.+++|++|++++|.+.
T Consensus       121 ~l~~N~i~~~~~~~~l-~~l~~L~~L~l~~N~l~  153 (198)
T 1ds9_A          121 YMSNNKITNWGEIDKL-AALDKLEDLLLAGNPLY  153 (198)
T ss_dssp             EESEEECCCHHHHHHH-TTTTTCSEEEECSCHHH
T ss_pred             ECCCCcCCchhHHHHH-hcCCCCCEEEecCCccc
Confidence            999999998876  67 99999999999999764

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A

Probab=98.50  E-value=4.6e-07  Score=80.90  Aligned_cols=62  Identities=26%  Similarity=0.267  Sum_probs=28.4

Q ss_pred             hccCcccceEEEeCCCCccCchhcCCCCCCcEEEccCCCccccchhHHhcCccccEeeccCCCCC
Q 037304          187 CKMFKFLRVLDLGSLVLIRYPFEIENLFLLRYLHLNIPSLKSLPSSLLNSLLNLYTLDKPFSYID  251 (257)
Q Consensus       187 ~~~l~~Lr~L~L~~~~l~~lp~~i~~L~~L~~L~l~~~~l~~lP~~i~~~L~~L~~L~l~~~~l~  251 (257)
                      +..+++|+.|++++|.+..+|. ++.+++|++|++++|.++.+|. + +.+++|+.|++++|.+.
T Consensus       261 ~~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~L~~n~l~~~~~-~-~~l~~L~~L~L~~n~l~  322 (466)
T 1o6v_A          261 LSGLTKLTELKLGANQISNISP-LAGLTALTNLELNENQLEDISP-I-SNLKNLTYLTLYFNNIS  322 (466)
T ss_dssp             GTTCTTCSEEECCSSCCCCCGG-GTTCTTCSEEECCSSCCSCCGG-G-GGCTTCSEEECCSSCCS
T ss_pred             hhcCCCCCEEECCCCccCcccc-ccCCCccCeEEcCCCcccCchh-h-cCCCCCCEEECcCCcCC
Confidence            3444444444444444444433 4444444444444444444433 3 44444444444444433

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*

Probab=98.48  E-value=2.4e-07  Score=79.70  Aligned_cols=112  Identities=14%  Similarity=-0.089  Sum_probs=73.3

Q ss_pred             CcEEEEEEeCCCCcc-cc--ccCCCCCccEEEeecCCCCCCCcccchHhhccCc-ccceEEEeCCCCccCchhcCCCCCC
Q 037304          141 ENVKRFTAHGNLNDF-AF--LDHFDSFLHSLLHLTSGSHYLNPTYCEKICKMFK-FLRVLDLGSLVLIRYPFEIENLFLL  216 (257)
Q Consensus       141 ~~~r~L~~~~~~~~~-~~--~~~~~~~Lrsl~l~~~~~~~~~~~~~~~~~~~l~-~Lr~L~L~~~~l~~lp~~i~~L~~L  216 (257)
                      .+++.+.+..+.... +.  ..... ++..+.+.+...   ...+.+..|..+. .++.|++++|.++.+|..+....+|
T Consensus       104 ~~L~~L~l~~n~l~~~~~~~~~~~~-~l~~l~l~~~~~---i~~l~~~~f~~~~~~l~~L~L~~N~i~~i~~~~f~~~~L  179 (350)
T 4ay9_X          104 PNLQYLLISNTGIKHLPDVHKIHSL-QKVLLDIQDNIN---IHTIERNSFVGLSFESVILWLNKNGIQEIHNSAFNGTQL  179 (350)
T ss_dssp             TTCCEEEEEEECCSSCCCCTTCCBS-SCEEEEEESCTT---CCEECTTSSTTSBSSCEEEECCSSCCCEECTTSSTTEEE
T ss_pred             cccccccccccccccCCchhhcccc-hhhhhhhccccc---cccccccchhhcchhhhhhccccccccCCChhhccccch
Confidence            456666666554432 11  12223 444444443322   2233444555554 5788888888888888877777788


Q ss_pred             cEEEccC-CCccccchhHHhcCccccEeeccCCCCCcCCCC
Q 037304          217 RYLHLNI-PSLKSLPSSLLNSLLNLYTLDKPFSYIDHTVDE  256 (257)
Q Consensus       217 ~~L~l~~-~~l~~lP~~i~~~L~~L~~L~l~~~~l~~lP~~  256 (257)
                      +.|++++ +.++.+|...|..+++|++|++++|+++.+|.+
T Consensus       180 ~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~l~~lp~~  220 (350)
T 4ay9_X          180 DELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSY  220 (350)
T ss_dssp             EEEECTTCTTCCCCCTTTTTTEECCSEEECTTSCCCCCCSS
T ss_pred             hHHhhccCCcccCCCHHHhccCcccchhhcCCCCcCccChh
Confidence            8888875 568888876658888888888888888888764

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}

Probab=98.45  E-value=2.8e-07  Score=82.33  Aligned_cols=86  Identities=17%  Similarity=0.048  Sum_probs=74.8

Q ss_pred             cccCCCCCccEEEeecCCCCCCCcccchHhhccCcccceEEEeCCCCccCchhcCCCCCCcEEEccCCCccccchhHHhc
Q 037304          157 FLDHFDSFLHSLLHLTSGSHYLNPTYCEKICKMFKFLRVLDLGSLVLIRYPFEIENLFLLRYLHLNIPSLKSLPSSLLNS  236 (257)
Q Consensus       157 ~~~~~~~~Lrsl~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~l~~lp~~i~~L~~L~~L~l~~~~l~~lP~~i~~~  236 (257)
                      ....++ ++++|.+.++...    .. + .+..+++|++|++++|.++.+|  ++.+++|++|++++|.++.+|  + ++
T Consensus        37 ~~~~l~-~L~~L~Ls~n~l~----~~-~-~l~~l~~L~~L~Ls~n~l~~~~--~~~l~~L~~L~Ls~N~l~~~~--~-~~  104 (457)
T 3bz5_A           37 SEEQLA-TLTSLDCHNSSIT----DM-T-GIEKLTGLTKLICTSNNITTLD--LSQNTNLTYLACDSNKLTNLD--V-TP  104 (457)
T ss_dssp             EHHHHT-TCCEEECCSSCCC----CC-T-TGGGCTTCSEEECCSSCCSCCC--CTTCTTCSEEECCSSCCSCCC--C-TT
T ss_pred             ChhHcC-CCCEEEccCCCcc----cC-h-hhcccCCCCEEEccCCcCCeEc--cccCCCCCEEECcCCCCceee--c-CC
Confidence            345677 9999999988764    22 3 6889999999999999999886  899999999999999999986  7 99


Q ss_pred             CccccEeeccCCCCCcCC
Q 037304          237 LLNLYTLDKPFSYIDHTV  254 (257)
Q Consensus       237 L~~L~~L~l~~~~l~~lP  254 (257)
                      +++|++|++++|.+..+|
T Consensus       105 l~~L~~L~L~~N~l~~l~  122 (457)
T 3bz5_A          105 LTKLTYLNCDTNKLTKLD  122 (457)
T ss_dssp             CTTCCEEECCSSCCSCCC
T ss_pred             CCcCCEEECCCCcCCeec
Confidence            999999999999987765

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}

Probab=98.45  E-value=2.7e-07  Score=84.63  Aligned_cols=57  Identities=16%  Similarity=0.148  Sum_probs=34.7

Q ss_pred             cccceEEEeCCCCccCchhcCCCCCC-------cEEEccCCCccccchhHHhcCccccEeeccCCCCC
Q 037304          191 KFLRVLDLGSLVLIRYPFEIENLFLL-------RYLHLNIPSLKSLPSSLLNSLLNLYTLDKPFSYID  251 (257)
Q Consensus       191 ~~Lr~L~L~~~~l~~lp~~i~~L~~L-------~~L~l~~~~l~~lP~~i~~~L~~L~~L~l~~~~l~  251 (257)
                      ++|+.|+|++|.++.+|. +..  +|       ++|++++|.++.+|.++ +++++|++|++++|.+.
T Consensus       180 ~~L~~L~Ls~N~L~~lp~-~~~--~L~~~~~~L~~L~Ls~N~l~~lp~~l-~~l~~L~~L~L~~N~l~  243 (571)
T 3cvr_A          180 ESLEALDVSTNLLESLPA-VPV--RNHHSEETEIFFRCRENRITHIPENI-LSLDPTCTIILEDNPLS  243 (571)
T ss_dssp             TTCCEEECCSSCCSSCCC-CC----------CCEEEECCSSCCCCCCGGG-GGSCTTEEEECCSSSCC
T ss_pred             CCCCEEECcCCCCCchhh-HHH--hhhcccccceEEecCCCcceecCHHH-hcCCCCCEEEeeCCcCC
Confidence            556666666666666655 443  45       66666666666666666 66666666666666654

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}

Probab=98.41  E-value=5e-07  Score=82.88  Aligned_cols=97  Identities=16%  Similarity=0.097  Sum_probs=77.2

Q ss_pred             cEEEEEEeCCCCcc-ccccCCCCCccEEEeecCCCCCCCcccchHhhccCcccceEEEeCCCCccCchhcCCCCCCcEEE
Q 037304          142 NVKRFTAHGNLNDF-AFLDHFDSFLHSLLHLTSGSHYLNPTYCEKICKMFKFLRVLDLGSLVLIRYPFEIENLFLLRYLH  220 (257)
Q Consensus       142 ~~r~L~~~~~~~~~-~~~~~~~~~Lrsl~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~l~~lp~~i~~L~~L~~L~  220 (257)
                      .++.|.+..+.... +.  .++ +|+.|.+.++....     ++.   .+++|+.|+|++|.+..+|. ++  ++|++|+
T Consensus       121 ~L~~L~Ls~N~l~~lp~--~l~-~L~~L~Ls~N~l~~-----lp~---~l~~L~~L~Ls~N~L~~lp~-l~--~~L~~L~  186 (571)
T 3cvr_A          121 SLKHLDVDNNQLTMLPE--LPA-LLEYINADNNQLTM-----LPE---LPTSLEVLSVRNNQLTFLPE-LP--ESLEALD  186 (571)
T ss_dssp             TCCEEECCSSCCSCCCC--CCT-TCCEEECCSSCCSC-----CCC---CCTTCCEEECCSSCCSCCCC-CC--TTCCEEE
T ss_pred             CCCEEECCCCcCCCCCC--cCc-cccEEeCCCCccCc-----CCC---cCCCcCEEECCCCCCCCcch-hh--CCCCEEE
Confidence            66777777766543 33  667 89999998887642     222   57899999999999999998 76  8999999


Q ss_pred             ccCCCccccchhHHhcCccc-------cEeeccCCCCCcCCCC
Q 037304          221 LNIPSLKSLPSSLLNSLLNL-------YTLDKPFSYIDHTVDE  256 (257)
Q Consensus       221 l~~~~l~~lP~~i~~~L~~L-------~~L~l~~~~l~~lP~~  256 (257)
                      +++|.++.+|. + +.  +|       ++|++++|.+..+|.+
T Consensus       187 Ls~N~L~~lp~-~-~~--~L~~~~~~L~~L~Ls~N~l~~lp~~  225 (571)
T 3cvr_A          187 VSTNLLESLPA-V-PV--RNHHSEETEIFFRCRENRITHIPEN  225 (571)
T ss_dssp             CCSSCCSSCCC-C-C----------CCEEEECCSSCCCCCCGG
T ss_pred             CcCCCCCchhh-H-HH--hhhcccccceEEecCCCcceecCHH
Confidence            99999999999 7 65  77       9999999999999974

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=98.40  E-value=1.8e-07  Score=79.57  Aligned_cols=103  Identities=11%  Similarity=-0.001  Sum_probs=71.6

Q ss_pred             CcEEEEEEeCCCCc---c-ccccCCCCCccEEEeecCCCCCCCcccchHhhccCcccceEEEeCC-CCc--cCchhcCCC
Q 037304          141 ENVKRFTAHGNLND---F-AFLDHFDSFLHSLLHLTSGSHYLNPTYCEKICKMFKFLRVLDLGSL-VLI--RYPFEIENL  213 (257)
Q Consensus       141 ~~~r~L~~~~~~~~---~-~~~~~~~~~Lrsl~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~-~l~--~lp~~i~~L  213 (257)
                      .++++|.+..+...   . .....++ +|++|.+.++...    ...+..+..+++|+.|++++| .++  .+|..+..+
T Consensus        93 ~~L~~L~L~~~~l~~~~~~~~~~~~~-~L~~L~L~~~~l~----~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~  167 (336)
T 2ast_B           93 FRVQHMDLSNSVIEVSTLHGILSQCS-KLQNLSLEGLRLS----DPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSC  167 (336)
T ss_dssp             BCCCEEECTTCEECHHHHHHHHTTBC-CCSEEECTTCBCC----HHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHC
T ss_pred             CCCCEEEccCCCcCHHHHHHHHhhCC-CCCEEeCcCcccC----HHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcC
Confidence            56677777666533   1 2234566 8888887776532    344566777888888888888 466  366767778


Q ss_pred             CCCcEEEccCC-Cccc--cchhHHhcCc-cccEeeccCCC
Q 037304          214 FLLRYLHLNIP-SLKS--LPSSLLNSLL-NLYTLDKPFSY  249 (257)
Q Consensus       214 ~~L~~L~l~~~-~l~~--lP~~i~~~L~-~L~~L~l~~~~  249 (257)
                      ++|++|++++| .++.  +|..+ +.++ +|++|++++|.
T Consensus       168 ~~L~~L~l~~~~~l~~~~~~~~~-~~l~~~L~~L~l~~~~  206 (336)
T 2ast_B          168 SRLDELNLSWCFDFTEKHVQVAV-AHVSETITQLNLSGYR  206 (336)
T ss_dssp             TTCCEEECCCCTTCCHHHHHHHH-HHSCTTCCEEECCSCG
T ss_pred             CCCCEEcCCCCCCcChHHHHHHH-HhcccCCCEEEeCCCc
Confidence            88888888888 7763  66667 7888 88888888873

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=98.40  E-value=2.2e-07  Score=80.87  Aligned_cols=112  Identities=15%  Similarity=0.015  Sum_probs=82.6

Q ss_pred             CcEEEEEEeCCCCc------c-c-cccCCCCCccEEEeecCCCCCCCcccchHhhccCcccceEEEeCCCCcc-----Cc
Q 037304          141 ENVKRFTAHGNLND------F-A-FLDHFDSFLHSLLHLTSGSHYLNPTYCEKICKMFKFLRVLDLGSLVLIR-----YP  207 (257)
Q Consensus       141 ~~~r~L~~~~~~~~------~-~-~~~~~~~~Lrsl~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~l~~-----lp  207 (257)
                      ..++.|.+..+...      . + ....++ +|+.|.+.++.........++..+..+++|+.|+|++|.+..     +|
T Consensus       187 ~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~-~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~  265 (386)
T 2ca6_A          187 RLLHTVKMVQNGIRPEGIEHLLLEGLAYCQ-ELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVV  265 (386)
T ss_dssp             TTCCEEECCSSCCCHHHHHHHHHTTGGGCT-TCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHHHH
T ss_pred             CCcCEEECcCCCCCHhHHHHHHHHHhhcCC-CccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCCCchhhHHHHH
Confidence            46777888777655      1 2 455677 888888887765210013356678888999999999998873     46


Q ss_pred             hhc--CCCCCCcEEEccCCCccc-----cchhHHhcCccccEeeccCCCCCcC
Q 037304          208 FEI--ENLFLLRYLHLNIPSLKS-----LPSSLLNSLLNLYTLDKPFSYIDHT  253 (257)
Q Consensus       208 ~~i--~~L~~L~~L~l~~~~l~~-----lP~~i~~~L~~L~~L~l~~~~l~~l  253 (257)
                      ..+  +.+++|++|++++|.+..     +|..++.++++|++|++++|.+...
T Consensus       266 ~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~~~  318 (386)
T 2ca6_A          266 DAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEE  318 (386)
T ss_dssp             HHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCTT
T ss_pred             HHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCcCCcc
Confidence            666  448899999999998886     8888856689999999999887643

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A

Probab=98.35  E-value=1.1e-06  Score=78.30  Aligned_cols=101  Identities=18%  Similarity=0.139  Sum_probs=67.9

Q ss_pred             CcEEEEEEeCCCCcc-ccccCCCCCccEEEeecCCCCCCCcccchHhhccCcccceEEEeCCCCccCchhcCCCCCCcEE
Q 037304          141 ENVKRFTAHGNLNDF-AFLDHFDSFLHSLLHLTSGSHYLNPTYCEKICKMFKFLRVLDLGSLVLIRYPFEIENLFLLRYL  219 (257)
Q Consensus       141 ~~~r~L~~~~~~~~~-~~~~~~~~~Lrsl~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~l~~lp~~i~~L~~L~~L  219 (257)
                      ..++.+.+..+.... +..  .+ +|++|.+.++...    . .| .+..+++|++|++++|.+..+|..+   .+|++|
T Consensus       111 ~~L~~L~l~~n~l~~l~~~--~~-~L~~L~L~~n~l~----~-lp-~~~~l~~L~~L~l~~N~l~~lp~~~---~~L~~L  178 (454)
T 1jl5_A          111 QSLKSLLVDNNNLKALSDL--PP-LLEYLGVSNNQLE----K-LP-ELQNSSFLKIIDVDNNSLKKLPDLP---PSLEFI  178 (454)
T ss_dssp             TTCCEEECCSSCCSCCCSC--CT-TCCEEECCSSCCS----S-CC-CCTTCTTCCEEECCSSCCSCCCCCC---TTCCEE
T ss_pred             CCCcEEECCCCccCcccCC--CC-CCCEEECcCCCCC----C-Cc-ccCCCCCCCEEECCCCcCcccCCCc---ccccEE
Confidence            456666665554332 111  14 7777777776553    2 23 4777888888888888877777543   477888


Q ss_pred             EccCCCccccchhHHhcCccccEeeccCCCCCcCCC
Q 037304          220 HLNIPSLKSLPSSLLNSLLNLYTLDKPFSYIDHTVD  255 (257)
Q Consensus       220 ~l~~~~l~~lP~~i~~~L~~L~~L~l~~~~l~~lP~  255 (257)
                      ++++|.++.+| ++ +++++|++|++++|.+..+|.
T Consensus       179 ~L~~n~l~~l~-~~-~~l~~L~~L~l~~N~l~~l~~  212 (454)
T 1jl5_A          179 AAGNNQLEELP-EL-QNLPFLTAIYADNNSLKKLPD  212 (454)
T ss_dssp             ECCSSCCSSCC-CC-TTCTTCCEEECCSSCCSSCCC
T ss_pred             ECcCCcCCcCc-cc-cCCCCCCEEECCCCcCCcCCC
Confidence            88888777777 46 788888888888877766654

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}

Probab=98.34  E-value=1.9e-06  Score=79.86  Aligned_cols=97  Identities=16%  Similarity=-0.063  Sum_probs=71.2

Q ss_pred             CcEEEEEEeCCCCcc-ccccCCCCCccEEEeecCCCCCCCcccchHhhccCcccceEEEeCCCCccCchhcCCCCCCcEE
Q 037304          141 ENVKRFTAHGNLNDF-AFLDHFDSFLHSLLHLTSGSHYLNPTYCEKICKMFKFLRVLDLGSLVLIRYPFEIENLFLLRYL  219 (257)
Q Consensus       141 ~~~r~L~~~~~~~~~-~~~~~~~~~Lrsl~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~l~~lp~~i~~L~~L~~L  219 (257)
                      ..++.|.+..+.... +.  .++ +|++|.+.++...    . ++.   .+++|+.|++++|.++.+|.   .+++|++|
T Consensus        61 ~~L~~L~L~~N~l~~lp~--~l~-~L~~L~Ls~N~l~----~-lp~---~l~~L~~L~Ls~N~l~~l~~---~l~~L~~L  126 (622)
T 3g06_A           61 AHITTLVIPDNNLTSLPA--LPP-ELRTLEVSGNQLT----S-LPV---LPPGLLELSIFSNPLTHLPA---LPSGLCKL  126 (622)
T ss_dssp             TTCSEEEECSCCCSCCCC--CCT-TCCEEEECSCCCS----C-CCC---CCTTCCEEEECSCCCCCCCC---CCTTCCEE
T ss_pred             CCCcEEEecCCCCCCCCC--cCC-CCCEEEcCCCcCC----c-CCC---CCCCCCEEECcCCcCCCCCC---CCCCcCEE
Confidence            567888887776553 32  456 8888888877653    1 222   67788888888888888776   56778888


Q ss_pred             EccCCCccccchhHHhcCccccEeeccCCCCCcCCC
Q 037304          220 HLNIPSLKSLPSSLLNSLLNLYTLDKPFSYIDHTVD  255 (257)
Q Consensus       220 ~l~~~~l~~lP~~i~~~L~~L~~L~l~~~~l~~lP~  255 (257)
                      ++++|.++.+|..    +++|++|++++|.+..+|.
T Consensus       127 ~L~~N~l~~lp~~----l~~L~~L~Ls~N~l~~l~~  158 (622)
T 3g06_A          127 WIFGNQLTSLPVL----PPGLQELSVSDNQLASLPA  158 (622)
T ss_dssp             ECCSSCCSCCCCC----CTTCCEEECCSSCCSCCCC
T ss_pred             ECCCCCCCcCCCC----CCCCCEEECcCCcCCCcCC
Confidence            8888888888764    3678888888888777764

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*

Probab=98.31  E-value=1.7e-06  Score=74.27  Aligned_cols=87  Identities=15%  Similarity=-0.007  Sum_probs=36.4

Q ss_pred             CccEEEeecCCCCCCCcccchHhhccCcccceEEEeCCCCc-cCc-hhcCCCCCCcE-EEccCCCccccchhHHhcCccc
Q 037304          164 FLHSLLHLTSGSHYLNPTYCEKICKMFKFLRVLDLGSLVLI-RYP-FEIENLFLLRY-LHLNIPSLKSLPSSLLNSLLNL  240 (257)
Q Consensus       164 ~Lrsl~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~l~-~lp-~~i~~L~~L~~-L~l~~~~l~~lP~~i~~~L~~L  240 (257)
                      +++.|.+.++...    .+.+..|.++++|+.|+|++|.+. .+| ..+.++++|+. +.+++|++..+|+..|..+++|
T Consensus        31 ~l~~L~Ls~N~i~----~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N~l~~l~~~~f~~l~~L  106 (350)
T 4ay9_X           31 NAIELRFVLTKLR----VIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNL  106 (350)
T ss_dssp             TCSEEEEESCCCS----EECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEETTCCEECTTSBCCCTTC
T ss_pred             CCCEEEccCCcCC----CcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCCcccccCchhhhhcccc
Confidence            4444444444332    233334444445555555544432 232 22344444332 2333344444433322444444


Q ss_pred             cEeeccCCCCCcCC
Q 037304          241 YTLDKPFSYIDHTV  254 (257)
Q Consensus       241 ~~L~l~~~~l~~lP  254 (257)
                      ++|++++|++..+|
T Consensus       107 ~~L~l~~n~l~~~~  120 (350)
T 4ay9_X          107 QYLLISNTGIKHLP  120 (350)
T ss_dssp             CEEEEEEECCSSCC
T ss_pred             ccccccccccccCC
Confidence            44544444444443

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}

Probab=98.28  E-value=1.8e-06  Score=80.08  Aligned_cols=77  Identities=19%  Similarity=0.059  Sum_probs=61.5

Q ss_pred             CccEEEeecCCCCCCCcccchHhhccCcccceEEEeCCCCccCchhcCCCCCCcEEEccCCCccccchhHHhcCccccEe
Q 037304          164 FLHSLLHLTSGSHYLNPTYCEKICKMFKFLRVLDLGSLVLIRYPFEIENLFLLRYLHLNIPSLKSLPSSLLNSLLNLYTL  243 (257)
Q Consensus       164 ~Lrsl~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~l~~lp~~i~~L~~L~~L~l~~~~l~~lP~~i~~~L~~L~~L  243 (257)
                      +|++|.+.++...    . ++   ..+++|+.|++++|.++.+|.   .+++|++|++++|.++.+|.++ +++++|+.|
T Consensus       222 ~L~~L~Ls~N~L~----~-lp---~~l~~L~~L~Ls~N~L~~lp~---~~~~L~~L~Ls~N~L~~lp~~l-~~l~~L~~L  289 (622)
T 3g06_A          222 GLKELIVSGNRLT----S-LP---VLPSELKELMVSGNRLTSLPM---LPSGLLSLSVYRNQLTRLPESL-IHLSSETTV  289 (622)
T ss_dssp             TCCEEECCSSCCS----C-CC---CCCTTCCEEECCSSCCSCCCC---CCTTCCEEECCSSCCCSCCGGG-GGSCTTCEE
T ss_pred             CCCEEEccCCccC----c-CC---CCCCcCcEEECCCCCCCcCCc---ccccCcEEeCCCCCCCcCCHHH-hhccccCEE
Confidence            5666666665543    1 22   456788999999999888887   6788999999999999999998 999999999


Q ss_pred             eccCCCCCc
Q 037304          244 DKPFSYIDH  252 (257)
Q Consensus       244 ~l~~~~l~~  252 (257)
                      ++++|.+..
T Consensus       290 ~L~~N~l~~  298 (622)
T 3g06_A          290 NLEGNPLSE  298 (622)
T ss_dssp             ECCSCCCCH
T ss_pred             EecCCCCCC
Confidence            999998653

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=98.27  E-value=3e-07  Score=78.22  Aligned_cols=85  Identities=16%  Similarity=0.014  Sum_probs=48.4

Q ss_pred             CCCCCccEEEeecC-CCCCCCcccchHhhccCc-ccceEEEeCCC--C--ccCchhcCCCCCCcEEEccCCC-cc-ccch
Q 037304          160 HFDSFLHSLLHLTS-GSHYLNPTYCEKICKMFK-FLRVLDLGSLV--L--IRYPFEIENLFLLRYLHLNIPS-LK-SLPS  231 (257)
Q Consensus       160 ~~~~~Lrsl~l~~~-~~~~~~~~~~~~~~~~l~-~Lr~L~L~~~~--l--~~lp~~i~~L~~L~~L~l~~~~-l~-~lP~  231 (257)
                      .++ +|+.|.+.++ ...   ....+..+..++ +|+.|++++|.  +  ..+|..++.+++|++|++++|. ++ ..|.
T Consensus       166 ~~~-~L~~L~l~~~~~l~---~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~  241 (336)
T 2ast_B          166 SCS-RLDELNLSWCFDFT---EKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQ  241 (336)
T ss_dssp             HCT-TCCEEECCCCTTCC---HHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGG
T ss_pred             cCC-CCCEEcCCCCCCcC---hHHHHHHHHhcccCCCEEEeCCCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHH
Confidence            445 5666665555 321   112344556666 66666666663  3  2455555666666666666666 33 4555


Q ss_pred             hHHhcCccccEeeccCCC
Q 037304          232 SLLNSLLNLYTLDKPFSY  249 (257)
Q Consensus       232 ~i~~~L~~L~~L~l~~~~  249 (257)
                      .+ +++++|++|++++|.
T Consensus       242 ~l-~~l~~L~~L~l~~~~  258 (336)
T 2ast_B          242 EF-FQLNYLQHLSLSRCY  258 (336)
T ss_dssp             GG-GGCTTCCEEECTTCT
T ss_pred             HH-hCCCCCCEeeCCCCC
Confidence            56 666667777666663

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=98.24  E-value=9.1e-07  Score=76.92  Aligned_cols=109  Identities=17%  Similarity=0.145  Sum_probs=72.7

Q ss_pred             cEEEEEEeCCCCcc---c----cccCCCCCccEEEeecCCCCCC-CcccchHhhccCcccceEEEeCCCC-----ccCch
Q 037304          142 NVKRFTAHGNLNDF---A----FLDHFDSFLHSLLHLTSGSHYL-NPTYCEKICKMFKFLRVLDLGSLVL-----IRYPF  208 (257)
Q Consensus       142 ~~r~L~~~~~~~~~---~----~~~~~~~~Lrsl~l~~~~~~~~-~~~~~~~~~~~l~~Lr~L~L~~~~l-----~~lp~  208 (257)
                      .+++|.+..+....   +    ....++ +|++|.+.++..... .....+..+..+++|++|+|++|.+     ..+|.
T Consensus       160 ~L~~L~L~~n~l~~~~~~~l~~~l~~~~-~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~  238 (386)
T 2ca6_A          160 PLRSIICGRNRLENGSMKEWAKTFQSHR-LLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAI  238 (386)
T ss_dssp             CCCEEECCSSCCTGGGHHHHHHHHHHCT-TCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHH
T ss_pred             CCcEEECCCCCCCcHHHHHHHHHHHhCC-CcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHH
Confidence            56677776665531   1    233566 788888777755200 0012333677788888888888887     45677


Q ss_pred             hcCCCCCCcEEEccCCCccc-----cchhHHhc--CccccEeeccCCCCCc
Q 037304          209 EIENLFLLRYLHLNIPSLKS-----LPSSLLNS--LLNLYTLDKPFSYIDH  252 (257)
Q Consensus       209 ~i~~L~~L~~L~l~~~~l~~-----lP~~i~~~--L~~L~~L~l~~~~l~~  252 (257)
                      .+..+++|++|++++|.+..     +|..+ ..  +++|++|++++|.+..
T Consensus       239 ~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l-~~~~~~~L~~L~L~~n~i~~  288 (386)
T 2ca6_A          239 ALKSWPNLRELGLNDCLLSARGAAAVVDAF-SKLENIGLQTLRLQYNEIEL  288 (386)
T ss_dssp             HGGGCTTCCEEECTTCCCCHHHHHHHHHHH-HTCSSCCCCEEECCSSCCBH
T ss_pred             HHccCCCcCEEECCCCCCchhhHHHHHHHH-hhccCCCeEEEECcCCcCCH
Confidence            78888888888888887763     46665 44  7888888888887664

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A

Probab=98.18  E-value=3.8e-06  Score=74.91  Aligned_cols=65  Identities=20%  Similarity=0.154  Sum_probs=47.7

Q ss_pred             hhccCcccceEEEeCCCCccCchhcCCCCCCcEEEccCCCccccchhHHhcCccccEeeccCCCCCcCCC
Q 037304          186 ICKMFKFLRVLDLGSLVLIRYPFEIENLFLLRYLHLNIPSLKSLPSSLLNSLLNLYTLDKPFSYIDHTVD  255 (257)
Q Consensus       186 ~~~~l~~Lr~L~L~~~~l~~lp~~i~~L~~L~~L~l~~~~l~~lP~~i~~~L~~L~~L~l~~~~l~~lP~  255 (257)
                      .+.++++|+.|++++|.+..+|...   .+|++|++++|.+..+|. + +.+++|++|++++|++..+|.
T Consensus       190 ~~~~l~~L~~L~l~~N~l~~l~~~~---~~L~~L~l~~n~l~~lp~-~-~~l~~L~~L~l~~N~l~~l~~  254 (454)
T 1jl5_A          190 ELQNLPFLTAIYADNNSLKKLPDLP---LSLESIVAGNNILEELPE-L-QNLPFLTTIYADNNLLKTLPD  254 (454)
T ss_dssp             CCTTCTTCCEEECCSSCCSSCCCCC---TTCCEEECCSSCCSSCCC-C-TTCTTCCEEECCSSCCSSCCS
T ss_pred             cccCCCCCCEEECCCCcCCcCCCCc---CcccEEECcCCcCCcccc-c-CCCCCCCEEECCCCcCCcccc
Confidence            3566667777777777766665432   467777777777778884 6 889999999999988887775

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}

Probab=98.02  E-value=4e-06  Score=72.32  Aligned_cols=88  Identities=15%  Similarity=0.054  Sum_probs=43.0

Q ss_pred             CccEEEeecCCCCCCCcccchHhhccCc-ccceEEEeCCCCccC-chh----cCCC-CCCcEEEccCCCccc-----cch
Q 037304          164 FLHSLLHLTSGSHYLNPTYCEKICKMFK-FLRVLDLGSLVLIRY-PFE----IENL-FLLRYLHLNIPSLKS-----LPS  231 (257)
Q Consensus       164 ~Lrsl~l~~~~~~~~~~~~~~~~~~~l~-~Lr~L~L~~~~l~~l-p~~----i~~L-~~L~~L~l~~~~l~~-----lP~  231 (257)
                      +|+.|.+.++..........+..+..++ +|+.|++++|.+... +..    +..+ ++|++|++++|.+..     +|.
T Consensus       139 ~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~  218 (362)
T 3goz_A          139 SITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAY  218 (362)
T ss_dssp             TCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHH
T ss_pred             ceeEEEccCCcCCHHHHHHHHHHHhcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHH
Confidence            5666666555442111112233344443 566666666665432 222    2233 356666666665554     555


Q ss_pred             hHHhcC-ccccEeeccCCCCCc
Q 037304          232 SLLNSL-LNLYTLDKPFSYIDH  252 (257)
Q Consensus       232 ~i~~~L-~~L~~L~l~~~~l~~  252 (257)
                      .+ ..+ ++|++|++++|.+..
T Consensus       219 ~l-~~~~~~L~~L~Ls~N~l~~  239 (362)
T 3goz_A          219 IF-SSIPNHVVSLNLCLNCLHG  239 (362)
T ss_dssp             HH-HHSCTTCCEEECCSSCCCC
T ss_pred             HH-hcCCCCceEEECcCCCCCc
Confidence            55 443 356666666665543

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}

Probab=97.94  E-value=8.3e-06  Score=70.30  Aligned_cols=107  Identities=14%  Similarity=0.011  Sum_probs=65.7

Q ss_pred             CcEEEEEEeCCCCccc-------cccCCCCCccEEEeecCCCCCCCcccchHhhccC-----cccceEEEeCCCCccC-c
Q 037304          141 ENVKRFTAHGNLNDFA-------FLDHFDSFLHSLLHLTSGSHYLNPTYCEKICKMF-----KFLRVLDLGSLVLIRY-P  207 (257)
Q Consensus       141 ~~~r~L~~~~~~~~~~-------~~~~~~~~Lrsl~l~~~~~~~~~~~~~~~~~~~l-----~~Lr~L~L~~~~l~~l-p  207 (257)
                      ..+++|.+..+.....       ....++.+|+.|.+.++...    ...+..+..+     ++|+.|+|++|.+... +
T Consensus        22 ~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~----~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~   97 (362)
T 3goz_A           22 HGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLG----FKNSDELVQILAAIPANVTSLNLSGNFLSYKSS   97 (362)
T ss_dssp             TTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGG----GSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCH
T ss_pred             CCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCC----HHHHHHHHHHHhccCCCccEEECcCCcCChHHH
Confidence            3467777777654321       11223225788888777653    2223333332     7888888888887744 3


Q ss_pred             hh----cCCC-CCCcEEEccCCCccccchhHHh----c-CccccEeeccCCCCC
Q 037304          208 FE----IENL-FLLRYLHLNIPSLKSLPSSLLN----S-LLNLYTLDKPFSYID  251 (257)
Q Consensus       208 ~~----i~~L-~~L~~L~l~~~~l~~lP~~i~~----~-L~~L~~L~l~~~~l~  251 (257)
                      ..    +..+ ++|++|++++|.++..+...++    . ..+|++|++++|.+.
T Consensus        98 ~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~  151 (362)
T 3goz_A           98 DELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLG  151 (362)
T ss_dssp             HHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGG
T ss_pred             HHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCC
Confidence            33    3344 7888888888888766543213    3 258888888888765

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I

Probab=97.91  E-value=6.1e-06  Score=73.08  Aligned_cols=107  Identities=15%  Similarity=0.038  Sum_probs=63.4

Q ss_pred             CcEEEEEEeCCCCcc-------ccccCCCCCccEEEeecCCCCCCCcccchHhhccCc----ccceEEEeCCCCc-----
Q 037304          141 ENVKRFTAHGNLNDF-------AFLDHFDSFLHSLLHLTSGSHYLNPTYCEKICKMFK----FLRVLDLGSLVLI-----  204 (257)
Q Consensus       141 ~~~r~L~~~~~~~~~-------~~~~~~~~~Lrsl~l~~~~~~~~~~~~~~~~~~~l~----~Lr~L~L~~~~l~-----  204 (257)
                      ..++.|.+..+....       .....++ +|++|.+.++...   .......+..++    +|+.|++++|.+.     
T Consensus        28 ~~L~~L~L~~~~l~~~~~~~l~~~l~~~~-~L~~L~Ls~n~l~---~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~  103 (461)
T 1z7x_W           28 QQCQVVRLDDCGLTEARCKDISSALRVNP-ALAELNLRSNELG---DVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCG  103 (461)
T ss_dssp             TTCSEEEEESSCCCHHHHHHHHHHHHTCT-TCCEEECTTCCCH---HHHHHHHHHTTCSTTCCCCEEECTTSCCBGGGHH
T ss_pred             CCccEEEccCCCCCHHHHHHHHHHHHhCC-CcCEEeCCCCcCC---hHHHHHHHHHHhhCCCceeEEEccCCCCCHHHHH
Confidence            456677777665441       1233456 7777777766542   111223334444    5777888777766     


Q ss_pred             cCchhcCCCCCCcEEEccCCCcccc-chhH----HhcCccccEeeccCCCCC
Q 037304          205 RYPFEIENLFLLRYLHLNIPSLKSL-PSSL----LNSLLNLYTLDKPFSYID  251 (257)
Q Consensus       205 ~lp~~i~~L~~L~~L~l~~~~l~~l-P~~i----~~~L~~L~~L~l~~~~l~  251 (257)
                      .+|..+..+++|++|++++|.+... +..+    +..+.+|++|++++|.+.
T Consensus       104 ~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~  155 (461)
T 1z7x_W          104 VLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLS  155 (461)
T ss_dssp             HHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCB
T ss_pred             HHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCC
Confidence            3567777777788888877776532 2222    122456788888777655

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I

Probab=97.87  E-value=6.5e-06  Score=72.89  Aligned_cols=87  Identities=21%  Similarity=0.088  Sum_probs=62.3

Q ss_pred             CccEEEeecCCCCCCCcccchHhhccCcccceEEEeCCCCccC-chhcCC-----CCCCcEEEccCCCcc-----ccchh
Q 037304          164 FLHSLLHLTSGSHYLNPTYCEKICKMFKFLRVLDLGSLVLIRY-PFEIEN-----LFLLRYLHLNIPSLK-----SLPSS  232 (257)
Q Consensus       164 ~Lrsl~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~l~~l-p~~i~~-----L~~L~~L~l~~~~l~-----~lP~~  232 (257)
                      +|+.|.+.++..........+..+..+++|+.|++++|.+... +..+..     .++|++|++++|.++     .+|..
T Consensus       314 ~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~  393 (461)
T 1z7x_W          314 QLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAAT  393 (461)
T ss_dssp             CCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHH
T ss_pred             cceeeEcCCCCCchHHHHHHHHHHhhCCCccEEEccCCccccccHHHHHHHHcCCCCceEEEECCCCCCChhhHHHHHHH
Confidence            5666666665543111122456677788999999999887633 333332     678999999999887     78888


Q ss_pred             HHhcCccccEeeccCCCCC
Q 037304          233 LLNSLLNLYTLDKPFSYID  251 (257)
Q Consensus       233 i~~~L~~L~~L~l~~~~l~  251 (257)
                      + .++++|++|++++|.+.
T Consensus       394 l-~~~~~L~~L~l~~N~i~  411 (461)
T 1z7x_W          394 L-LANHSLRELDLSNNCLG  411 (461)
T ss_dssp             H-HHCCCCCEEECCSSSCC
T ss_pred             H-HhCCCccEEECCCCCCC
Confidence            8 88999999999998765

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A

Probab=97.85  E-value=1.1e-05  Score=66.76  Aligned_cols=62  Identities=23%  Similarity=0.105  Sum_probs=34.7

Q ss_pred             ccCcccceEEEeCCCCccC---chhcCCCCCCcEEEccCCCccccchhHHhcCc--cccEeeccCCCCC
Q 037304          188 KMFKFLRVLDLGSLVLIRY---PFEIENLFLLRYLHLNIPSLKSLPSSLLNSLL--NLYTLDKPFSYID  251 (257)
Q Consensus       188 ~~l~~Lr~L~L~~~~l~~l---p~~i~~L~~L~~L~l~~~~l~~lP~~i~~~L~--~L~~L~l~~~~l~  251 (257)
                      .++++|+.|+|++|.+..+   |..++.+++|++|+|++|.++.+ ..+ ..+.  +|++|+|++|.+.
T Consensus       167 ~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~-~~l-~~l~~l~L~~L~L~~Npl~  233 (267)
T 3rw6_A          167 ENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE-REL-DKIKGLKLEELWLDGNSLC  233 (267)
T ss_dssp             HHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG-GGG-GGGTTSCCSEEECTTSTTG
T ss_pred             hhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc-hhh-hhcccCCcceEEccCCcCc
Confidence            4456666666666665533   24445566666666666666554 223 4444  6666666666543

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}

Probab=97.84  E-value=7.4e-06  Score=71.15  Aligned_cols=109  Identities=11%  Similarity=-0.083  Sum_probs=78.7

Q ss_pred             CcEEEEEEeCCCCcc---cc----c-cCCCCCccEEEeecCCCCCCCcccchHhhccCcccceEEEeCCCCc-----cCc
Q 037304          141 ENVKRFTAHGNLNDF---AF----L-DHFDSFLHSLLHLTSGSHYLNPTYCEKICKMFKFLRVLDLGSLVLI-----RYP  207 (257)
Q Consensus       141 ~~~r~L~~~~~~~~~---~~----~-~~~~~~Lrsl~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~l~-----~lp  207 (257)
                      ..+++|.+..+....   ..    . ...+ .|++|.+.++.........+...+...++|+.|+|++|.+.     .++
T Consensus       126 ~~L~~L~Ls~n~l~~~~~~~L~~~L~~~~~-~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~  204 (372)
T 3un9_A          126 LRARKLGLQLNSLGPEACKDLRDLLLHDQC-QITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLA  204 (372)
T ss_dssp             HTEEEEECCSSCCCHHHHHHHHHHHHSTTC-CCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHH
T ss_pred             HhccHhhcCCCCCCHHHHHHHHHHHHhcCC-ccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHH
Confidence            457788887776542   11    1 2356 89999998887531111234455678889999999999977     346


Q ss_pred             hhcCCCCCCcEEEccCCCcc-----ccchhHHhcCccccEeeccCCCCC
Q 037304          208 FEIENLFLLRYLHLNIPSLK-----SLPSSLLNSLLNLYTLDKPFSYID  251 (257)
Q Consensus       208 ~~i~~L~~L~~L~l~~~~l~-----~lP~~i~~~L~~L~~L~l~~~~l~  251 (257)
                      ..+...++|+.|+|++|.+.     .++..+ ...++|++|+|++|.+.
T Consensus       205 ~~L~~~~~L~~L~Ls~N~i~~~g~~~l~~~L-~~~~~L~~L~Ls~N~i~  252 (372)
T 3un9_A          205 AQLDRNRQLQELNVAYNGAGDTAALALARAA-REHPSLELLHLYFNELS  252 (372)
T ss_dssp             HHGGGCSCCCEEECCSSCCCHHHHHHHHHHH-HHCSSCCEEECTTSSCC
T ss_pred             HHHhcCCCcCeEECCCCCCCHHHHHHHHHHH-HhCCCCCEEeccCCCCC
Confidence            66777889999999999886     455666 77899999999999865

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A

Probab=97.74  E-value=4.1e-05  Score=63.32  Aligned_cols=82  Identities=21%  Similarity=0.128  Sum_probs=63.3

Q ss_pred             CCCCCccEEEeecCCCCCCCcccchHhhccCcccceEEEeCCCCccCchhcCCCC--CCcEEEccCCCcc-ccch-----
Q 037304          160 HFDSFLHSLLHLTSGSHYLNPTYCEKICKMFKFLRVLDLGSLVLIRYPFEIENLF--LLRYLHLNIPSLK-SLPS-----  231 (257)
Q Consensus       160 ~~~~~Lrsl~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~l~~lp~~i~~L~--~L~~L~l~~~~l~-~lP~-----  231 (257)
                      .++ +|++|.+.++....  ...++..+..+++|+.|+|++|.+..+ ..+..+.  +|+.|+|++|.+. .+|.     
T Consensus       168 ~l~-~L~~L~Ls~N~l~~--l~~l~~~~~~l~~L~~L~Ls~N~i~~~-~~l~~l~~l~L~~L~L~~Npl~~~~~~~~~y~  243 (267)
T 3rw6_A          168 NIP-ELLSLNLSNNRLYR--LDDMSSIVQKAPNLKILNLSGNELKSE-RELDKIKGLKLEELWLDGNSLCDTFRDQSTYI  243 (267)
T ss_dssp             HCT-TCCEEECTTSCCCC--CGGGTTHHHHSTTCCEEECTTSCCCSG-GGGGGGTTSCCSEEECTTSTTGGGCSSHHHHH
T ss_pred             hCC-CCCEEECCCCCCCC--CccchhHHhhCCCCCEEECCCCccCCc-hhhhhcccCCcceEEccCCcCccccCcchhHH
Confidence            577 99999999998752  123456778999999999999999876 3355555  9999999999986 4552     


Q ss_pred             -hHHhcCccccEeec
Q 037304          232 -SLLNSLLNLYTLDK  245 (257)
Q Consensus       232 -~i~~~L~~L~~L~l  245 (257)
                       .++..+++|+.||=
T Consensus       244 ~~il~~~P~L~~LDg  258 (267)
T 3rw6_A          244 SAIRERFPKLLRLDG  258 (267)
T ss_dssp             HHHHHHCTTCCEESS
T ss_pred             HHHHHHCcccCeECC
Confidence             23388999999973

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}

Probab=97.67  E-value=5.9e-05  Score=64.04  Aligned_cols=88  Identities=19%  Similarity=0.001  Sum_probs=70.5

Q ss_pred             CCCCccEEEeecCCCCCCCcccchHhhccCcccceEEEeCCCCccCc-hhcCCCCCCc-EEEccCCCccccchhHHhcCc
Q 037304          161 FDSFLHSLLHLTSGSHYLNPTYCEKICKMFKFLRVLDLGSLVLIRYP-FEIENLFLLR-YLHLNIPSLKSLPSSLLNSLL  238 (257)
Q Consensus       161 ~~~~Lrsl~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~l~~lp-~~i~~L~~L~-~L~l~~~~l~~lP~~i~~~L~  238 (257)
                      ++ +|+++.+.++..    ..+.+..|.++.+|+.|+|.++ +..++ ..+.++.+|+ .+.+.. .++.+++..|..+.
T Consensus       225 ~~-~L~~l~L~~n~i----~~I~~~aF~~~~~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~  297 (329)
T 3sb4_A          225 MP-NLVSLDISKTNA----TTIPDFTFAQKKYLLKIKLPHN-LKTIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCD  297 (329)
T ss_dssp             CT-TCCEEECTTBCC----CEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCT
T ss_pred             cC-CCeEEECCCCCc----ceecHhhhhCCCCCCEEECCcc-cceehHHHhhCChhccEEEEEcc-cceEEchhhhhCCc
Confidence            56 888888876543    3566778999999999999887 77675 5678889998 999988 78888876668899


Q ss_pred             cccEeeccCCCCCcCCC
Q 037304          239 NLYTLDKPFSYIDHTVD  255 (257)
Q Consensus       239 ~L~~L~l~~~~l~~lP~  255 (257)
                      +|+.+++.++.+..+++
T Consensus       298 ~L~~l~l~~n~i~~I~~  314 (329)
T 3sb4_A          298 NLRYVLATGDKITTLGD  314 (329)
T ss_dssp             TEEEEEECSSCCCEECT
T ss_pred             cCCEEEeCCCccCccch
Confidence            99999998888877765

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}

Probab=97.64  E-value=2e-05  Score=68.49  Aligned_cols=109  Identities=13%  Similarity=-0.052  Sum_probs=77.7

Q ss_pred             CcEEEEEEeCCCCcc---cc-ccCCCCCccEEEeecCCCCCCCcccchHhh-ccCcccceEEEeCCCCcc-----Cchhc
Q 037304          141 ENVKRFTAHGNLNDF---AF-LDHFDSFLHSLLHLTSGSHYLNPTYCEKIC-KMFKFLRVLDLGSLVLIR-----YPFEI  210 (257)
Q Consensus       141 ~~~r~L~~~~~~~~~---~~-~~~~~~~Lrsl~l~~~~~~~~~~~~~~~~~-~~l~~Lr~L~L~~~~l~~-----lp~~i  210 (257)
                      ..++.|.+..+....   .. ...+. +++.|.+.++.........+...+ ...+.|+.|+|++|.+..     ++..+
T Consensus       101 ~~L~~L~Ls~n~l~~~~~~~l~~~L~-~L~~L~Ls~n~l~~~~~~~L~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L  179 (372)
T 3un9_A          101 HALDEVNLASCQLDPAGLRTLLPVFL-RARKLGLQLNSLGPEACKDLRDLLLHDQCQITTLRLSNNPLTAAGVAVLMEGL  179 (372)
T ss_dssp             SCEEEEECTTCCCCHHHHHHTHHHHH-TEEEEECCSSCCCHHHHHHHHHHHHSTTCCCCEEECCSSCCHHHHHHHHHHHH
T ss_pred             CCceEEEecCCCCCHHHHHHHHHHHH-hccHhhcCCCCCCHHHHHHHHHHHHhcCCccceeeCCCCCCChHHHHHHHHHH
Confidence            367778887776542   11 12345 889999988876310011122223 346889999999999863     56667


Q ss_pred             CCCCCCcEEEccCCCcc-----ccchhHHhcCccccEeeccCCCCC
Q 037304          211 ENLFLLRYLHLNIPSLK-----SLPSSLLNSLLNLYTLDKPFSYID  251 (257)
Q Consensus       211 ~~L~~L~~L~l~~~~l~-----~lP~~i~~~L~~L~~L~l~~~~l~  251 (257)
                      ..+++|++|+|++|.+.     .++..+ ...++|++|+|++|.+.
T Consensus       180 ~~~~~L~~L~Ls~N~l~~~g~~~L~~~L-~~~~~L~~L~Ls~N~i~  224 (372)
T 3un9_A          180 AGNTSVTHLSLLHTGLGDEGLELLAAQL-DRNRQLQELNVAYNGAG  224 (372)
T ss_dssp             HTCSSCCEEECTTSSCHHHHHHHHHHHG-GGCSCCCEEECCSSCCC
T ss_pred             hcCCCcCEEeCCCCCCCcHHHHHHHHHH-hcCCCcCeEECCCCCCC
Confidence            88899999999999886     356677 88899999999999875

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1

Probab=97.63  E-value=3.2e-05  Score=60.30  Aligned_cols=108  Identities=11%  Similarity=0.064  Sum_probs=77.7

Q ss_pred             CcEEEEEEeCC-CCcc-------ccccCCCCCccEEEeecCCCCCCCcccchHhhccCcccceEEEeCCCCcc-----Cc
Q 037304          141 ENVKRFTAHGN-LNDF-------AFLDHFDSFLHSLLHLTSGSHYLNPTYCEKICKMFKFLRVLDLGSLVLIR-----YP  207 (257)
Q Consensus       141 ~~~r~L~~~~~-~~~~-------~~~~~~~~~Lrsl~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~l~~-----lp  207 (257)
                      ..++.|.+..+ ....       ......+ .|++|.+.++.....-...+...+...+.|+.|+|++|.+..     +.
T Consensus        36 ~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~-~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~~~l~  114 (185)
T 1io0_A           36 PDLEEVNLNNIMNIPVPTLKACAEALKTNT-YVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILALV  114 (185)
T ss_dssp             TTCCEEECTTCTTCCHHHHHHHHHHHTTCC-SCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHHHH
T ss_pred             CCCCEEEecCCCCCCHHHHHHHHHHHHhCC-CcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHHHHHH
Confidence            45667777766 4431       2234456 899999988876421112344566777889999999999873     56


Q ss_pred             hhcCCCCCCcEEEc--cCCCcc-----ccchhHHhcCccccEeeccCCCC
Q 037304          208 FEIENLFLLRYLHL--NIPSLK-----SLPSSLLNSLLNLYTLDKPFSYI  250 (257)
Q Consensus       208 ~~i~~L~~L~~L~l--~~~~l~-----~lP~~i~~~L~~L~~L~l~~~~l  250 (257)
                      ..+...++|++|+|  ++|.+.     .+...+ ...++|++|++++|.+
T Consensus       115 ~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L-~~n~~L~~L~L~~n~i  163 (185)
T 1io0_A          115 EALQSNTSLIELRIDNQSQPLGNNVEMEIANML-EKNTTLLKFGYHFTQQ  163 (185)
T ss_dssp             HGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHH-HHCSSCCEEECCCSSH
T ss_pred             HHHHhCCCceEEEecCCCCCCCHHHHHHHHHHH-HhCCCcCEEeccCCCC
Confidence            77777889999999  778876     366666 7778999999999875

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1

Probab=97.61  E-value=3.4e-05  Score=60.14  Aligned_cols=92  Identities=11%  Similarity=-0.001  Sum_probs=68.4

Q ss_pred             ccCCCCCccEEEeecC-CCCCCCcccchHhhccCcccceEEEeCCCCc-----cCchhcCCCCCCcEEEccCCCccc---
Q 037304          158 LDHFDSFLHSLLHLTS-GSHYLNPTYCEKICKMFKFLRVLDLGSLVLI-----RYPFEIENLFLLRYLHLNIPSLKS---  228 (257)
Q Consensus       158 ~~~~~~~Lrsl~l~~~-~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~l~-----~lp~~i~~L~~L~~L~l~~~~l~~---  228 (257)
                      ....+ .|++|.+.++ .........+...+...+.|++|+|++|.+.     .+...+...++|++|+|++|.+..   
T Consensus        32 l~~~~-~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~  110 (185)
T 1io0_A           32 QNNDP-DLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGI  110 (185)
T ss_dssp             HTTCT-TCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHH
T ss_pred             HhcCC-CCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHH
Confidence            34556 8999999887 5531111234456777889999999999986     245556666889999999998863   


Q ss_pred             --cchhHHhcCccccEeec--cCCCCC
Q 037304          229 --LPSSLLNSLLNLYTLDK--PFSYID  251 (257)
Q Consensus       229 --lP~~i~~~L~~L~~L~l--~~~~l~  251 (257)
                        +...+ ...++|++|++  ++|.+.
T Consensus       111 ~~l~~~L-~~n~~L~~L~L~~~~N~i~  136 (185)
T 1io0_A          111 LALVEAL-QSNTSLIELRIDNQSQPLG  136 (185)
T ss_dssp             HHHHHGG-GGCSSCCEEECCCCSSCCC
T ss_pred             HHHHHHH-HhCCCceEEEecCCCCCCC
Confidence              67777 88889999999  778764

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=97.56  E-value=9e-05  Score=67.64  Aligned_cols=65  Identities=14%  Similarity=-0.067  Sum_probs=50.8

Q ss_pred             hhccCcccceEEEeCCCCc--cCchhcCCCCCCcEEEccCCCcc--ccchhHHhcCccccEeeccCCCCC
Q 037304          186 ICKMFKFLRVLDLGSLVLI--RYPFEIENLFLLRYLHLNIPSLK--SLPSSLLNSLLNLYTLDKPFSYID  251 (257)
Q Consensus       186 ~~~~l~~Lr~L~L~~~~l~--~lp~~i~~L~~L~~L~l~~~~l~--~lP~~i~~~L~~L~~L~l~~~~l~  251 (257)
                      ....+++|+.|++++|.++  .++..+..+++|++|++++|.++  .+|..+ ..+++|++|++++|++.
T Consensus       458 ~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~-~~l~~L~~L~ls~n~it  526 (592)
T 3ogk_B          458 IGQYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCCFSERAIAAAV-TKLPSLRYLWVQGYRAS  526 (592)
T ss_dssp             HHHSCTTCCEEEECSCCSSHHHHHHHHTCCTTCCEEEEESCCCBHHHHHHHH-HHCSSCCEEEEESCBCC
T ss_pred             HHHhCccceEeeccCCCCCHHHHHHHHhcCcccCeeeccCCCCcHHHHHHHH-HhcCccCeeECcCCcCC
Confidence            3345788888888888876  35666788899999999999875  355556 78999999999999854

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A

Probab=97.44  E-value=0.00023  Score=54.92  Aligned_cols=83  Identities=8%  Similarity=-0.050  Sum_probs=56.1

Q ss_pred             CccEEEeecCCCCCCCcccchHhhccCcccceEEEeCCC-Ccc-CchhcCCC----CCCcEEEccCCC-cccc-chhHHh
Q 037304          164 FLHSLLHLTSGSHYLNPTYCEKICKMFKFLRVLDLGSLV-LIR-YPFEIENL----FLLRYLHLNIPS-LKSL-PSSLLN  235 (257)
Q Consensus       164 ~Lrsl~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~-l~~-lp~~i~~L----~~L~~L~l~~~~-l~~l-P~~i~~  235 (257)
                      +|+.|.+.++...  ... + ..+.++++|+.|+|++|. ++. --..++.+    ++|++|++++|. ++.- -..+ .
T Consensus        62 ~L~~LDLs~~~It--d~G-L-~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L-~  136 (176)
T 3e4g_A           62 KIQAIDATDSCIM--SIG-F-DHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIAL-H  136 (176)
T ss_dssp             CEEEEEEESCCCC--GGG-G-GGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHG-G
T ss_pred             eEeEEeCcCCCcc--HHH-H-HHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHH-h
Confidence            6888888877653  111 1 345788889999999886 662 23445554    368899998875 6521 1345 7


Q ss_pred             cCccccEeeccCCC-CC
Q 037304          236 SLLNLYTLDKPFSY-ID  251 (257)
Q Consensus       236 ~L~~L~~L~l~~~~-l~  251 (257)
                      ++++|++|++++|. ++
T Consensus       137 ~~~~L~~L~L~~c~~It  153 (176)
T 3e4g_A          137 HFRNLKYLFLSDLPGVK  153 (176)
T ss_dssp             GCTTCCEEEEESCTTCC
T ss_pred             cCCCCCEEECCCCCCCC
Confidence            78889999998885 43

>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*

Probab=97.42  E-value=0.00019  Score=52.57  Aligned_cols=53  Identities=26%  Similarity=0.232  Sum_probs=31.4

Q ss_pred             eEEEeCCCCc--cCchhcCCCCCCcEEEccCCCccccchhHHhcCccccEeeccCCC
Q 037304          195 VLDLGSLVLI--RYPFEIENLFLLRYLHLNIPSLKSLPSSLLNSLLNLYTLDKPFSY  249 (257)
Q Consensus       195 ~L~L~~~~l~--~lp~~i~~L~~L~~L~l~~~~l~~lP~~i~~~L~~L~~L~l~~~~  249 (257)
                      +++-++.+++  .+|..+.  .+|++|+|++|.|+.||...|..+.+|++|+|.+|.
T Consensus        12 ~v~Cs~~~L~~~~vP~~lp--~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP   66 (130)
T 3rfe_A           12 LVDCGRRGLTWASLPTAFP--VDTTELVLTGNNLTALPPGLLDALPALRTAHLGANP   66 (130)
T ss_dssp             EEECCSSCCCTTTSCSCCC--TTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSC
T ss_pred             EEEeCCCCCccccCCCCCC--cCCCEEECCCCcCCccChhhhhhccccCEEEecCCC
Confidence            4555555555  5664433  246666666666666666555566666666666653

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=97.32  E-value=0.00022  Score=65.07  Aligned_cols=22  Identities=14%  Similarity=0.239  Sum_probs=12.8

Q ss_pred             cccchhHHhcCccccEeeccCCC
Q 037304          227 KSLPSSLLNSLLNLYTLDKPFSY  249 (257)
Q Consensus       227 ~~lP~~i~~~L~~L~~L~l~~~~  249 (257)
                      ..+|..+ ..+++|++|++++|.
T Consensus       283 ~~l~~~~-~~~~~L~~L~Ls~~~  304 (592)
T 3ogk_B          283 NEMPILF-PFAAQIRKLDLLYAL  304 (592)
T ss_dssp             TTGGGGG-GGGGGCCEEEETTCC
T ss_pred             hHHHHHH-hhcCCCcEEecCCCc
Confidence            3455555 556666666666655

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}

Probab=97.31  E-value=0.00027  Score=61.01  Aligned_cols=109  Identities=12%  Similarity=0.071  Sum_probs=65.9

Q ss_pred             CcEEEEEEeCCCCcc---c--cccCCCCCccEEEeecCCC---CCCCcccchHhh--ccCcccceEEEeCCCCcc-Cchh
Q 037304          141 ENVKRFTAHGNLNDF---A--FLDHFDSFLHSLLHLTSGS---HYLNPTYCEKIC--KMFKFLRVLDLGSLVLIR-YPFE  209 (257)
Q Consensus       141 ~~~r~L~~~~~~~~~---~--~~~~~~~~Lrsl~l~~~~~---~~~~~~~~~~~~--~~l~~Lr~L~L~~~~l~~-lp~~  209 (257)
                      .++++|.+..+....   .  ....++ +|+.|.+.....   .......+...+  ..+++|++|+|.+|.+.. .+..
T Consensus       193 ~~L~~L~L~~~~l~~~~l~~l~~~~lp-~L~~L~L~~~~~~~~~~~~~~~l~~~l~~~~~p~Lr~L~L~~~~i~~~~~~~  271 (362)
T 2ra8_A          193 PNLKSLEIISGGLPDSVVEDILGSDLP-NLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDAEEQNVVVEM  271 (362)
T ss_dssp             TTCSEEEEECSBCCHHHHHHHHHSBCT-TCCEEEEECBCGGGTCCSCGGGTGGGSCTTTCTTCCEEEEESCTTHHHHHHH
T ss_pred             CCCcEEEEecCCCChHHHHHHHHccCC-CCcEEEEeccccccccchhHHHHHHHHhcCCCCCcCEEeCCCCCCchHHHHH
Confidence            566677766554332   1  112567 788877642111   000011112223  247889999998888652 2222


Q ss_pred             c---CCCCCCcEEEccCCCccc-----cchhHHhcCccccEeeccCCCCC
Q 037304          210 I---ENLFLLRYLHLNIPSLKS-----LPSSLLNSLLNLYTLDKPFSYID  251 (257)
Q Consensus       210 i---~~L~~L~~L~l~~~~l~~-----lP~~i~~~L~~L~~L~l~~~~l~  251 (257)
                      +   +.+++|+.|+|+.|.+..     ++..+ .++++|+.|++++|.+.
T Consensus       272 la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L-~~l~~L~~L~L~~n~i~  320 (362)
T 2ra8_A          272 FLESDILPQLETMDISAGVLTDEGARLLLDHV-DKIKHLKFINMKYNYLS  320 (362)
T ss_dssp             HHHCSSGGGCSEEECCSSCCBHHHHHHHHTTH-HHHTTCSEEECCSBBCC
T ss_pred             HHhCccCCCCCEEECCCCCCChHHHHHHHhhc-ccCCcceEEECCCCcCC
Confidence            2   357889999998888764     66677 77889999999888754

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=97.06  E-value=0.00029  Score=64.17  Aligned_cols=104  Identities=13%  Similarity=0.067  Sum_probs=60.3

Q ss_pred             CcEEEEEEeCCCCcc---cccc-CCCCCccEEEeecCCCCCCCcccchHhhccCcccceEEEeCCCCcc-----CchhcC
Q 037304          141 ENVKRFTAHGNLNDF---AFLD-HFDSFLHSLLHLTSGSHYLNPTYCEKICKMFKFLRVLDLGSLVLIR-----YPFEIE  211 (257)
Q Consensus       141 ~~~r~L~~~~~~~~~---~~~~-~~~~~Lrsl~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~l~~-----lp~~i~  211 (257)
                      ..+++|.+..+....   .... .++ +|++|.+.++...  .....+..+.++++|++|++++|.+..     ++....
T Consensus       105 ~~L~~L~L~~~~~~~~~~~~l~~~~~-~L~~L~L~~~~~~--~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~  181 (594)
T 2p1m_B          105 TWLEEIRLKRMVVTDDCLELIAKSFK-NFKVLVLSSCEGF--STDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPD  181 (594)
T ss_dssp             TTCCEEEEESCBCCHHHHHHHHHHCT-TCCEEEEESCEEE--EHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCT
T ss_pred             CCCCeEEeeCcEEcHHHHHHHHHhCC-CCcEEeCCCcCCC--CHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhh
Confidence            456677777655332   1121 466 7888887766321  111244555677888888888776442     233333


Q ss_pred             CCCCCcEEEccCCC--c--cccchhHHhcCccccEeeccCC
Q 037304          212 NLFLLRYLHLNIPS--L--KSLPSSLLNSLLNLYTLDKPFS  248 (257)
Q Consensus       212 ~L~~L~~L~l~~~~--l--~~lP~~i~~~L~~L~~L~l~~~  248 (257)
                      .+++|+.|++++|.  +  ..++.-+ .++++|++|++++|
T Consensus       182 ~~~~L~~L~l~~~~~~~~~~~l~~l~-~~~~~L~~L~L~~~  221 (594)
T 2p1m_B          182 TYTSLVSLNISCLASEVSFSALERLV-TRCPNLKSLKLNRA  221 (594)
T ss_dssp             TCCCCCEEECTTCCSCCCHHHHHHHH-HHCTTCCEEECCTT
T ss_pred             cCCcCcEEEecccCCcCCHHHHHHHH-HhCCCCcEEecCCC
Confidence            56677777777765  2  1233333 55677777777776

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}

Probab=97.00  E-value=0.0012  Score=55.73  Aligned_cols=98  Identities=12%  Similarity=0.049  Sum_probs=77.3

Q ss_pred             CcEEEEEEeCCCCc-c--ccccCCCCCccEEEeecCCCCCCCcccchHhhccCcccc-eEEEeCCCCccCc-hhcCCCCC
Q 037304          141 ENVKRFTAHGNLND-F--AFLDHFDSFLHSLLHLTSGSHYLNPTYCEKICKMFKFLR-VLDLGSLVLIRYP-FEIENLFL  215 (257)
Q Consensus       141 ~~~r~L~~~~~~~~-~--~~~~~~~~~Lrsl~l~~~~~~~~~~~~~~~~~~~l~~Lr-~L~L~~~~l~~lp-~~i~~L~~  215 (257)
                      ..++.+.+..+... +  ....++. +|+++.+..+     ...+.+..|.++++|+ .+++.+ .++.++ ..+.++++
T Consensus       226 ~~L~~l~L~~n~i~~I~~~aF~~~~-~L~~l~l~~n-----i~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~  298 (329)
T 3sb4_A          226 PNLVSLDISKTNATTIPDFTFAQKK-YLLKIKLPHN-----LKTIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDN  298 (329)
T ss_dssp             TTCCEEECTTBCCCEECTTTTTTCT-TCCEEECCTT-----CCEECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTT
T ss_pred             CCCeEEECCCCCcceecHhhhhCCC-CCCEEECCcc-----cceehHHHhhCChhccEEEEEcc-cceEEchhhhhCCcc
Confidence            35566666654333 2  2456777 8999988775     2356778999999999 999998 777774 78899999


Q ss_pred             CcEEEccCCCccccchhHHhcCccccEeec
Q 037304          216 LRYLHLNIPSLKSLPSSLLNSLLNLYTLDK  245 (257)
Q Consensus       216 L~~L~l~~~~l~~lP~~i~~~L~~L~~L~l  245 (257)
                      |+.++++++.++.++...|.++.+|+.+..
T Consensus       299 L~~l~l~~n~i~~I~~~aF~~~~~L~~ly~  328 (329)
T 3sb4_A          299 LRYVLATGDKITTLGDELFGNGVPSKLIYK  328 (329)
T ss_dssp             EEEEEECSSCCCEECTTTTCTTCCCCEEEC
T ss_pred             CCEEEeCCCccCccchhhhcCCcchhhhcc
Confidence            999999999999999977789999998853

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=96.92  E-value=0.00043  Score=63.06  Aligned_cols=85  Identities=19%  Similarity=0.140  Sum_probs=61.9

Q ss_pred             CCCCCccEEEeecCCCCCCCcccchHhhccCcccceEEEeCCC-Ccc--CchhcCCCCCCcEEEccCCCccc-----cch
Q 037304          160 HFDSFLHSLLHLTSGSHYLNPTYCEKICKMFKFLRVLDLGSLV-LIR--YPFEIENLFLLRYLHLNIPSLKS-----LPS  231 (257)
Q Consensus       160 ~~~~~Lrsl~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~-l~~--lp~~i~~L~~L~~L~l~~~~l~~-----lP~  231 (257)
                      .++ +|+.|.+.++...   ...+......+++|+.|++++|. +..  ++..+.++++|++|++++|.++.     ++.
T Consensus       103 ~~~-~L~~L~L~~~~~~---~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~  178 (594)
T 2p1m_B          103 SYT-WLEEIRLKRMVVT---DDCLELIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSH  178 (594)
T ss_dssp             HCT-TCCEEEEESCBCC---HHHHHHHHHHCTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGG
T ss_pred             hCC-CCCeEEeeCcEEc---HHHHHHHHHhCCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHH
Confidence            567 8999999887642   22233333478999999999994 553  56656689999999999987653     333


Q ss_pred             hHHhcCccccEeeccCCC
Q 037304          232 SLLNSLLNLYTLDKPFSY  249 (257)
Q Consensus       232 ~i~~~L~~L~~L~l~~~~  249 (257)
                      -. ..+++|++|++++|.
T Consensus       179 ~~-~~~~~L~~L~l~~~~  195 (594)
T 2p1m_B          179 FP-DTYTSLVSLNISCLA  195 (594)
T ss_dssp             SC-TTCCCCCEEECTTCC
T ss_pred             Hh-hcCCcCcEEEecccC
Confidence            33 467799999999885

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}

Probab=96.66  E-value=0.0073  Score=52.02  Aligned_cols=106  Identities=14%  Similarity=0.049  Sum_probs=67.9

Q ss_pred             CcEEEEEEeCCC-CccccccCCCCCccEEEeecCCCCCCCcccchHhh--ccCcccceEEEeCC--C------CccCchh
Q 037304          141 ENVKRFTAHGNL-NDFAFLDHFDSFLHSLLHLTSGSHYLNPTYCEKIC--KMFKFLRVLDLGSL--V------LIRYPFE  209 (257)
Q Consensus       141 ~~~r~L~~~~~~-~~~~~~~~~~~~Lrsl~l~~~~~~~~~~~~~~~~~--~~l~~Lr~L~L~~~--~------l~~lp~~  209 (257)
                      +.++.|.+.++. ...+. ...+ +|+.|.+..+...   .... ..+  ..+++|+.|+|+.+  .      +..+...
T Consensus       172 P~L~~L~L~g~~~l~l~~-~~~~-~L~~L~L~~~~l~---~~~l-~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~  245 (362)
T 2ra8_A          172 PLLNNLKIKGTNNLSIGK-KPRP-NLKSLEIISGGLP---DSVV-EDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPL  245 (362)
T ss_dssp             TTCCEEEEECCBTCBCCS-CBCT-TCSEEEEECSBCC---HHHH-HHHHHSBCTTCCEEEEECBCGGGTCCSCGGGTGGG
T ss_pred             CCCcEEEEeCCCCceecc-ccCC-CCcEEEEecCCCC---hHHH-HHHHHccCCCCcEEEEeccccccccchhHHHHHHH
Confidence            678888887763 22233 3467 8999998766542   1111 222  37899999998632  1      2222222


Q ss_pred             c--CCCCCCcEEEccCCCcc-ccchhHH--hcCccccEeeccCCCCCc
Q 037304          210 I--ENLFLLRYLHLNIPSLK-SLPSSLL--NSLLNLYTLDKPFSYIDH  252 (257)
Q Consensus       210 i--~~L~~L~~L~l~~~~l~-~lP~~i~--~~L~~L~~L~l~~~~l~~  252 (257)
                      +  ..+++|++|+|++|.+. ..+..++  +.+++|++|+|+.|.+..
T Consensus       246 l~~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d  293 (362)
T 2ra8_A          246 FSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTD  293 (362)
T ss_dssp             SCTTTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBH
T ss_pred             HhcCCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCCh
Confidence            2  35789999999999875 3344441  257899999999987653

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A

Probab=96.52  E-value=0.0093  Score=52.04  Aligned_cols=110  Identities=5%  Similarity=-0.064  Sum_probs=67.1

Q ss_pred             cEEEEEEeCCCCcc--ccccCCCCCccEEEeecCCCC-CCCcccchHhhccCcccceEEEeCCCCccCc-hhcCCCCCCc
Q 037304          142 NVKRFTAHGNLNDF--AFLDHFDSFLHSLLHLTSGSH-YLNPTYCEKICKMFKFLRVLDLGSLVLIRYP-FEIENLFLLR  217 (257)
Q Consensus       142 ~~r~L~~~~~~~~~--~~~~~~~~~Lrsl~l~~~~~~-~~~~~~~~~~~~~l~~Lr~L~L~~~~l~~lp-~~i~~L~~L~  217 (257)
                      .++.+.+..+-..+  ....++. +|+++.+.++... .....+.+..|.++++|+.+++.. .++.++ ..+.++.+|+
T Consensus       249 ~L~~i~lp~~i~~I~~~aF~~c~-~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~~-~i~~I~~~aF~~c~~L~  326 (401)
T 4fdw_A          249 GITTVKLPNGVTNIASRAFYYCP-ELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIPE-SIRILGQGLLGGNRKVT  326 (401)
T ss_dssp             CCSEEEEETTCCEECTTTTTTCT-TCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCCT-TCCEECTTTTTTCCSCC
T ss_pred             CccEEEeCCCccEEChhHhhCCC-CCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeCC-ceEEEhhhhhcCCCCcc
Confidence            34455554433332  2344566 7777776654431 011235556777777788877773 466554 4566778888


Q ss_pred             EEEccCCCccccchhHHhcCccccEeeccCCCCCcCCC
Q 037304          218 YLHLNIPSLKSLPSSLLNSLLNLYTLDKPFSYIDHTVD  255 (257)
Q Consensus       218 ~L~l~~~~l~~lP~~i~~~L~~L~~L~l~~~~l~~lP~  255 (257)
                      .+.+.. +++.++...|.++ +|+.+++.+|.+..++.
T Consensus       327 ~l~lp~-~l~~I~~~aF~~~-~L~~l~l~~n~~~~l~~  362 (401)
T 4fdw_A          327 QLTIPA-NVTQINFSAFNNT-GIKEVKVEGTTPPQVFE  362 (401)
T ss_dssp             EEEECT-TCCEECTTSSSSS-CCCEEEECCSSCCBCCC
T ss_pred             EEEECc-cccEEcHHhCCCC-CCCEEEEcCCCCccccc
Confidence            888844 3777766655777 88888888776555543

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A

Probab=96.16  E-value=0.019  Score=44.17  Aligned_cols=84  Identities=11%  Similarity=0.102  Sum_probs=60.4

Q ss_pred             CcEEEEEEeCCCCcc---ccccCCCCCccEEEeecCCCCCCCcccchHhhccC----cccceEEEeCCC-CccC-chhcC
Q 037304          141 ENVKRFTAHGNLNDF---AFLDHFDSFLHSLLHLTSGSHYLNPTYCEKICKMF----KFLRVLDLGSLV-LIRY-PFEIE  211 (257)
Q Consensus       141 ~~~r~L~~~~~~~~~---~~~~~~~~~Lrsl~l~~~~~~~~~~~~~~~~~~~l----~~Lr~L~L~~~~-l~~l-p~~i~  211 (257)
                      ..+.+|.+.+.....   ....+++ +|+.|.+.++..-   ....-..+..+    ++|+.|++++|. ++.- -..+.
T Consensus        61 ~~L~~LDLs~~~Itd~GL~~L~~~~-~L~~L~L~~C~~I---tD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~  136 (176)
T 3e4g_A           61 YKIQAIDATDSCIMSIGFDHMEGLQ-YVEKIRLCKCHYI---EDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALH  136 (176)
T ss_dssp             CCEEEEEEESCCCCGGGGGGGTTCS-CCCEEEEESCTTC---CHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGG
T ss_pred             ceEeEEeCcCCCccHHHHHHhcCCC-CCCEEEeCCCCcc---CHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHh
Confidence            568899988876443   4456888 9999999998642   12222344443    479999999997 7732 35577


Q ss_pred             CCCCCcEEEccCCC-ccc
Q 037304          212 NLFLLRYLHLNIPS-LKS  228 (257)
Q Consensus       212 ~L~~L~~L~l~~~~-l~~  228 (257)
                      .+++|++|++++|. ++.
T Consensus       137 ~~~~L~~L~L~~c~~Itd  154 (176)
T 3e4g_A          137 HFRNLKYLFLSDLPGVKE  154 (176)
T ss_dssp             GCTTCCEEEEESCTTCCC
T ss_pred             cCCCCCEEECCCCCCCCc
Confidence            89999999999985 653

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A

Probab=95.16  E-value=0.044  Score=47.71  Aligned_cols=84  Identities=12%  Similarity=0.072  Sum_probs=60.3

Q ss_pred             CccEEEeecCCCCCCCcccchHhhccCcccceEEEeCCCCc-----cC-chhcCCCCCCcEEEccCCCccccchhHHhcC
Q 037304          164 FLHSLLHLTSGSHYLNPTYCEKICKMFKFLRVLDLGSLVLI-----RY-PFEIENLFLLRYLHLNIPSLKSLPSSLLNSL  237 (257)
Q Consensus       164 ~Lrsl~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~l~-----~l-p~~i~~L~~L~~L~l~~~~l~~lP~~i~~~L  237 (257)
                      +|+++.+...     ...+....|.++++|+.+++.++.+.     .+ +..+..+++|+.+.+. ++++.++...|..+
T Consensus       249 ~L~~i~lp~~-----i~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~-~~i~~I~~~aF~~c  322 (401)
T 4fdw_A          249 GITTVKLPNG-----VTNIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIP-ESIRILGQGLLGGN  322 (401)
T ss_dssp             CCSEEEEETT-----CCEECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCC-TTCCEECTTTTTTC
T ss_pred             CccEEEeCCC-----ccEEChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeC-CceEEEhhhhhcCC
Confidence            4555555322     22455678889999999999887754     34 4667888999999998 45888888776888


Q ss_pred             ccccEeeccCCCCCcCC
Q 037304          238 LNLYTLDKPFSYIDHTV  254 (257)
Q Consensus       238 ~~L~~L~l~~~~l~~lP  254 (257)
                      .+|+.+.+..+ +..++
T Consensus       323 ~~L~~l~lp~~-l~~I~  338 (401)
T 4fdw_A          323 RKVTQLTIPAN-VTQIN  338 (401)
T ss_dssp             CSCCEEEECTT-CCEEC
T ss_pred             CCccEEEECcc-ccEEc
Confidence            99999998654 44443

>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*

Probab=94.30  E-value=0.034  Score=40.32  Aligned_cols=35  Identities=26%  Similarity=0.129  Sum_probs=27.3

Q ss_pred             ccceEEEeCCCCccCch-hcCCCCCCcEEEccCCCc
Q 037304          192 FLRVLDLGSLVLIRYPF-EIENLFLLRYLHLNIPSL  226 (257)
Q Consensus       192 ~Lr~L~L~~~~l~~lp~-~i~~L~~L~~L~l~~~~l  226 (257)
                      +|+.|+|++|.|+.+|. .+..+++|++|+|++|.+
T Consensus        32 ~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~   67 (130)
T 3rfe_A           32 DTTELVLTGNNLTALPPGLLDALPALRTAHLGANPW   67 (130)
T ss_dssp             TCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCC
T ss_pred             CCCEEECCCCcCCccChhhhhhccccCEEEecCCCe
Confidence            57888888888888864 456788888888888755

>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}

Probab=93.21  E-value=0.24  Score=42.17  Aligned_cols=65  Identities=14%  Similarity=0.085  Sum_probs=47.0

Q ss_pred             cchHhhccCcccceEEEeCCCCccCc-hhcCCCCCCcEEEccCCCccccchhHHhcCccccEeeccC
Q 037304          182 YCEKICKMFKFLRVLDLGSLVLIRYP-FEIENLFLLRYLHLNIPSLKSLPSSLLNSLLNLYTLDKPF  247 (257)
Q Consensus       182 ~~~~~~~~l~~Lr~L~L~~~~l~~lp-~~i~~L~~L~~L~l~~~~l~~lP~~i~~~L~~L~~L~l~~  247 (257)
                      +....|.++.+|+.+.+.++.++.++ ..+.++.+|+.+.+..+ ++.++...|.++.+|+.+.+..
T Consensus       277 i~~~aF~~c~~L~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~ip~  342 (379)
T 4h09_A          277 VPYLLCSGCSNLTKVVMDNSAIETLEPRVFMDCVKLSSVTLPTA-LKTIQVYAFKNCKALSTISYPK  342 (379)
T ss_dssp             ECTTTTTTCTTCCEEEECCTTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCCCCCCT
T ss_pred             ccccccccccccccccccccccceehhhhhcCCCCCCEEEcCcc-ccEEHHHHhhCCCCCCEEEECC
Confidence            44567788888888888877777664 56777888888888643 7777766557777887777643

>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}

Probab=92.39  E-value=0.47  Score=40.73  Aligned_cols=66  Identities=14%  Similarity=0.099  Sum_probs=48.8

Q ss_pred             ccchHhhccCcccceEEEeCCCCccCc-hhcCCCCCCcEEEccCCCccccchhHHhcCccccEeeccCC
Q 037304          181 TYCEKICKMFKFLRVLDLGSLVLIRYP-FEIENLFLLRYLHLNIPSLKSLPSSLLNSLLNLYTLDKPFS  248 (257)
Q Consensus       181 ~~~~~~~~~l~~Lr~L~L~~~~l~~lp-~~i~~L~~L~~L~l~~~~l~~lP~~i~~~L~~L~~L~l~~~  248 (257)
                      .+....|.++.+|+.+++..+ ++.+. ..+.++.+|+.+.+.. .++.++...|.++.+|+.+++.++
T Consensus       301 ~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~C~~L~~i~ip~-sv~~I~~~aF~~C~~L~~i~~~~~  367 (394)
T 4gt6_A          301 ELPESVFAGCISLKSIDIPEG-ITQILDDAFAGCEQLERIAIPS-SVTKIPESAFSNCTALNNIEYSGS  367 (394)
T ss_dssp             EECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEECT-TCCBCCGGGGTTCTTCCEEEESSC
T ss_pred             ccCceeecCCCCcCEEEeCCc-ccEehHhHhhCCCCCCEEEECc-ccCEEhHhHhhCCCCCCEEEECCc
Confidence            455567888888888888653 55553 5677788899888864 377887766688889998888765

>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1

Probab=92.14  E-value=0.087  Score=41.17  Aligned_cols=89  Identities=11%  Similarity=0.008  Sum_probs=56.6

Q ss_pred             cCCCCCccEEEeecCCCCCCCcccchHhhccCcccceEEEeCCCCc-----cCchhcCCCCCCcEEEccCC---Ccc---
Q 037304          159 DHFDSFLHSLLHLTSGSHYLNPTYCEKICKMFKFLRVLDLGSLVLI-----RYPFEIENLFLLRYLHLNIP---SLK---  227 (257)
Q Consensus       159 ~~~~~~Lrsl~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~l~-----~lp~~i~~L~~L~~L~l~~~---~l~---  227 (257)
                      ..-. .|+.|.+.++.....-...+...+..-+.|+.|+|++|.|.     .+-+.+..=+.|+.|+|+++   .+.   
T Consensus        67 ~~N~-~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~ala~aL~~N~tL~~L~L~n~~~~~ig~~g  145 (197)
T 1pgv_A           67 CNSK-HIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARLLRSTLVTQSIVEFKADNQRQSVLGNQV  145 (197)
T ss_dssp             TTCS-CCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHHHHHTTTTCCCSEEECCCCSSCCCCHHH
T ss_pred             hhCC-CcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHHHHHHHhhCCceeEEECCCCcCcCcCHHH
Confidence            3344 78888888776642112334566667778888888888876     23344555566888888754   232   


Q ss_pred             --ccchhHHhcCccccEeeccCCC
Q 037304          228 --SLPSSLLNSLLNLYTLDKPFSY  249 (257)
Q Consensus       228 --~lP~~i~~~L~~L~~L~l~~~~  249 (257)
                        .+-+.+ ..-+.|+.|+++.+.
T Consensus       146 ~~~ia~aL-~~N~tL~~L~l~~~~  168 (197)
T 1pgv_A          146 EMDMMMAI-EENESLLRVGISFAS  168 (197)
T ss_dssp             HHHHHHHH-HHCSSCCEEECCCCC
T ss_pred             HHHHHHHH-HhCCCcCeEeccCCC
Confidence              344455 556778888887654

>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1

Probab=91.08  E-value=0.27  Score=38.33  Aligned_cols=87  Identities=13%  Similarity=-0.078  Sum_probs=59.9

Q ss_pred             CCCCCccEEEeecC-CCCCCCcccchHhhccCcccceEEEeCCCCc-----cCchhcCCCCCCcEEEccCCCcc-----c
Q 037304          160 HFDSFLHSLLHLTS-GSHYLNPTYCEKICKMFKFLRVLDLGSLVLI-----RYPFEIENLFLLRYLHLNIPSLK-----S  228 (257)
Q Consensus       160 ~~~~~Lrsl~l~~~-~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~l~-----~lp~~i~~L~~L~~L~l~~~~l~-----~  228 (257)
                      .-+ .|+.|.+.++ .....-...+...+..-+.|+.|+|++|.+.     .+-+.+..=+.|+.|+|++|.|.     .
T Consensus        39 ~n~-~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~a  117 (197)
T 1pgv_A           39 DDT-DLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLAR  117 (197)
T ss_dssp             TCS-SCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHH
T ss_pred             cCC-CccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHH
Confidence            345 7889988764 4321011234456777788999999999987     23344444578999999999886     4


Q ss_pred             cchhHHhcCccccEeeccCC
Q 037304          229 LPSSLLNSLLNLYTLDKPFS  248 (257)
Q Consensus       229 lP~~i~~~L~~L~~L~l~~~  248 (257)
                      |-+.+ ..-..|+.|+|++|
T Consensus       118 la~aL-~~N~tL~~L~L~n~  136 (197)
T 1pgv_A          118 LLRST-LVTQSIVEFKADNQ  136 (197)
T ss_dssp             HHHHT-TTTCCCSEEECCCC
T ss_pred             HHHHH-hhCCceeEEECCCC
Confidence            55555 55677999999865

>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}

Probab=91.06  E-value=0.27  Score=42.31  Aligned_cols=65  Identities=15%  Similarity=0.187  Sum_probs=46.6

Q ss_pred             cchHhhccCcccceEEEeCCCCccCc-hhcCCCCCCcEEEccCCCccccchhHHhcCccccEeeccCC
Q 037304          182 YCEKICKMFKFLRVLDLGSLVLIRYP-FEIENLFLLRYLHLNIPSLKSLPSSLLNSLLNLYTLDKPFS  248 (257)
Q Consensus       182 ~~~~~~~~l~~Lr~L~L~~~~l~~lp-~~i~~L~~L~~L~l~~~~l~~lP~~i~~~L~~L~~L~l~~~  248 (257)
                      +....|.++.+|+.+++..+ ++.++ ..+.++.+|+.+.+..+ ++.++...|.++.+|+.++++.+
T Consensus       311 I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~lp~~  376 (394)
T 4fs7_A          311 IGEEAFESCTSLVSIDLPYL-VEEIGKRSFRGCTSLSNINFPLS-LRKIGANAFQGCINLKKVELPKR  376 (394)
T ss_dssp             ECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTBTTCTTCCEEEEEGG
T ss_pred             echhhhcCCCCCCEEEeCCc-ccEEhHHhccCCCCCCEEEECcc-ccEehHHHhhCCCCCCEEEECCC
Confidence            44566778888888887543 55553 56777888888888665 77777766578888888887654

>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}

Probab=90.98  E-value=0.64  Score=39.50  Aligned_cols=65  Identities=11%  Similarity=0.132  Sum_probs=50.0

Q ss_pred             cchHhhccCcccceEEEeCCCCccCc-hhcCCCCCCcEEEccCCCccccchhHHhcCccccEeeccC
Q 037304          182 YCEKICKMFKFLRVLDLGSLVLIRYP-FEIENLFLLRYLHLNIPSLKSLPSSLLNSLLNLYTLDKPF  247 (257)
Q Consensus       182 ~~~~~~~~l~~Lr~L~L~~~~l~~lp-~~i~~L~~L~~L~l~~~~l~~lP~~i~~~L~~L~~L~l~~  247 (257)
                      +....|.++.+|+.+.+..+ +..++ ..+..+.+|+.+.+.++.++.+++..|.++.+|+.+.+..
T Consensus       254 I~~~aF~~~~~l~~i~l~~~-i~~i~~~aF~~c~~L~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp~  319 (379)
T 4h09_A          254 IGSFLLQNCTALKTLNFYAK-VKTVPYLLCSGCSNLTKVVMDNSAIETLEPRVFMDCVKLSSVTLPT  319 (379)
T ss_dssp             ECTTTTTTCTTCCEEEECCC-CSEECTTTTTTCTTCCEEEECCTTCCEECTTTTTTCTTCCEEECCT
T ss_pred             eCccccceeehhcccccccc-ceeccccccccccccccccccccccceehhhhhcCCCCCCEEEcCc
Confidence            34456777778888887543 55554 4567889999999998889999887768889999998854

>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}

Probab=84.68  E-value=2.4  Score=36.23  Aligned_cols=86  Identities=10%  Similarity=0.076  Sum_probs=58.7

Q ss_pred             CCCCCccEEEeecCCCCCCCcccchHhhccCcccceEEEeCCCCccCc-hhcCCCCCCcEEEccCCCccccchhHHhcCc
Q 037304          160 HFDSFLHSLLHLTSGSHYLNPTYCEKICKMFKFLRVLDLGSLVLIRYP-FEIENLFLLRYLHLNIPSLKSLPSSLLNSLL  238 (257)
Q Consensus       160 ~~~~~Lrsl~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~l~~lp-~~i~~L~~L~~L~l~~~~l~~lP~~i~~~L~  238 (257)
                      ++. .|+++.+....     ..+....|.++..|+.+.+. +.+..++ ..+.++.+|+.+.+..+ ++.+....|..+.
T Consensus       263 ~c~-~L~~i~lp~~~-----~~I~~~aF~~c~~L~~i~l~-~~i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~C~  334 (394)
T 4gt6_A          263 SCA-YLASVKMPDSV-----VSIGTGAFMNCPALQDIEFS-SRITELPESVFAGCISLKSIDIPEG-ITQILDDAFAGCE  334 (394)
T ss_dssp             TCS-SCCEEECCTTC-----CEECTTTTTTCTTCCEEECC-TTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCT
T ss_pred             ecc-cccEEeccccc-----ceecCcccccccccccccCC-CcccccCceeecCCCCcCEEEeCCc-ccEehHhHhhCCC
Confidence            445 56666554332     23445677888888888885 3456665 45777899999999753 7788776668889


Q ss_pred             cccEeeccCCCCCcCC
Q 037304          239 NLYTLDKPFSYIDHTV  254 (257)
Q Consensus       239 ~L~~L~l~~~~l~~lP  254 (257)
                      +|+.+.+..+ +..++
T Consensus       335 ~L~~i~ip~s-v~~I~  349 (394)
T 4gt6_A          335 QLERIAIPSS-VTKIP  349 (394)
T ss_dssp             TCCEEEECTT-CCBCC
T ss_pred             CCCEEEECcc-cCEEh
Confidence            9999998654 44443

>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}

Probab=82.64  E-value=3  Score=35.57  Aligned_cols=69  Identities=14%  Similarity=0.038  Sum_probs=50.0

Q ss_pred             chHhhccCcccceEEEeCCCCccCc-hhcCCCCCCcEEEccCCCccccchhHHhcCccccEeeccCCCCCcCC
Q 037304          183 CEKICKMFKFLRVLDLGSLVLIRYP-FEIENLFLLRYLHLNIPSLKSLPSSLLNSLLNLYTLDKPFSYIDHTV  254 (257)
Q Consensus       183 ~~~~~~~l~~Lr~L~L~~~~l~~lp-~~i~~L~~L~~L~l~~~~l~~lP~~i~~~L~~L~~L~l~~~~l~~lP  254 (257)
                      ....|..+.+|+.+.+..+ ++.++ ..+.++.+|+.+.+.. .++.++...|.++.+|+.+++..+ +..++
T Consensus       289 ~~~~F~~~~~L~~i~l~~~-i~~I~~~aF~~c~~L~~i~lp~-~v~~I~~~aF~~c~~L~~i~lp~~-l~~I~  358 (394)
T 4fs7_A          289 PEKTFYGCSSLTEVKLLDS-VKFIGEEAFESCTSLVSIDLPY-LVEEIGKRSFRGCTSLSNINFPLS-LRKIG  358 (394)
T ss_dssp             CTTTTTTCTTCCEEEECTT-CCEECTTTTTTCTTCCEECCCT-TCCEECTTTTTTCTTCCEECCCTT-CCEEC
T ss_pred             ccccccccccccccccccc-cceechhhhcCCCCCCEEEeCC-cccEEhHHhccCCCCCCEEEECcc-ccEeh
Confidence            3456777888888888654 55553 5577889999999864 488887766588999999998765 44443

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	257
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	99.19
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	99.12
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	99.04
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	99.03
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	98.99
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	98.9
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	98.9
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	98.89
d2ifga3	156	High affinity nerve growth factor receptor, N-term	98.88
d2ifga3	156	High affinity nerve growth factor receptor, N-term	98.79
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	98.77
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	98.73
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	98.68
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	98.65
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	98.61
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	98.58
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	98.58
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	98.58
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	98.56
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	98.54
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	98.52
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	98.52
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	98.51
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	98.49
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	98.33
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	98.29
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	98.18
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	98.09
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	98.07
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	97.98
d1koha1	162	mRNA export factor tap {Human (Homo sapiens) [TaxI	97.92
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	97.67
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	97.66
d1koha1	162	mRNA export factor tap {Human (Homo sapiens) [TaxI	97.57
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	97.56
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	97.37
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	97.03
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	96.95
d1pgva_	167	Tropomodulin C-terminal domain {nematode (Caenorha	96.7
d1pgva_	167	Tropomodulin C-terminal domain {nematode (Caenorha	96.06
d1io0a_	166	Tropomodulin C-terminal domain {Chicken (Gallus ga	94.41
d1io0a_	166	Tropomodulin C-terminal domain {Chicken (Gallus ga	94.23

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.19  E-value=4.2e-11  Score=86.39  Aligned_cols=101  Identities=16%  Similarity=0.028  Sum_probs=81.6

Q ss_pred             EEEeCCCCcc-ccccCCCCCccEEEeecCCCCCCCcccchHhhccCcccceEEEeCCCCccCchhcCCCCCCcEEEccCC
Q 037304          146 FTAHGNLNDF-AFLDHFDSFLHSLLHLTSGSHYLNPTYCEKICKMFKFLRVLDLGSLVLIRYPFEIENLFLLRYLHLNIP  224 (257)
Q Consensus       146 L~~~~~~~~~-~~~~~~~~~Lrsl~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~l~~lp~~i~~L~~L~~L~l~~~  224 (257)
                      |.+..+.... +....+. +++.|.+.++...     ..|..+..+++|++|++++|.++.+|. ++.+++|+.|++++|
T Consensus         3 L~Ls~n~l~~l~~l~~l~-~L~~L~ls~N~l~-----~lp~~~~~l~~L~~L~l~~N~i~~l~~-~~~l~~L~~L~l~~N   75 (124)
T d1dcea3           3 LHLAHKDLTVLCHLEQLL-LVTHLDLSHNRLR-----ALPPALAALRCLEVLQASDNALENVDG-VANLPRLQELLLCNN   75 (124)
T ss_dssp             EECTTSCCSSCCCGGGGT-TCCEEECCSSCCC-----CCCGGGGGCTTCCEEECCSSCCCCCGG-GTTCSSCCEEECCSS
T ss_pred             EEcCCCCCCCCcccccCC-CCCEEECCCCccC-----cchhhhhhhhcccccccccccccccCc-cccccccCeEECCCC
Confidence            4444444432 4566778 9999999988764     245678899999999999999999874 999999999999999


Q ss_pred             Cccccch--hHHhcCccccEeeccCCCCCcCC
Q 037304          225 SLKSLPS--SLLNSLLNLYTLDKPFSYIDHTV  254 (257)
Q Consensus       225 ~l~~lP~--~i~~~L~~L~~L~l~~~~l~~lP  254 (257)
                      .+..+|.  .+ +.+++|++|++++|.+...|
T Consensus        76 ~i~~~~~~~~l-~~~~~L~~L~l~~N~i~~~~  106 (124)
T d1dcea3          76 RLQQSAAIQPL-VSCPRLVLLNLQGNSLCQEE  106 (124)
T ss_dssp             CCCSSSTTGGG-GGCTTCCEEECTTSGGGGSS
T ss_pred             ccCCCCCchhh-cCCCCCCEEECCCCcCCcCc
Confidence            9998874  56 89999999999999876554

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.12  E-value=6.9e-11  Score=85.19  Aligned_cols=82  Identities=16%  Similarity=0.079  Sum_probs=71.0

Q ss_pred             cEEEeecCCCCCCCcccchHhhccCcccceEEEeCCCCccCchhcCCCCCCcEEEccCCCccccchhHHhcCccccEeec
Q 037304          166 HSLLHLTSGSHYLNPTYCEKICKMFKFLRVLDLGSLVLIRYPFEIENLFLLRYLHLNIPSLKSLPSSLLNSLLNLYTLDK  245 (257)
Q Consensus       166 rsl~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~l~~lp~~i~~L~~L~~L~l~~~~l~~lP~~i~~~L~~L~~L~l  245 (257)
                      |.|.+.++...     .+ ..+..+++|+.|++++|.++.+|+.++.+++|+.|++++|.++.+|. + +++++|++|++
T Consensus         1 R~L~Ls~n~l~-----~l-~~l~~l~~L~~L~ls~N~l~~lp~~~~~l~~L~~L~l~~N~i~~l~~-~-~~l~~L~~L~l   72 (124)
T d1dcea3           1 RVLHLAHKDLT-----VL-CHLEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALENVDG-V-ANLPRLQELLL   72 (124)
T ss_dssp             SEEECTTSCCS-----SC-CCGGGGTTCCEEECCSSCCCCCCGGGGGCTTCCEEECCSSCCCCCGG-G-TTCSSCCEEEC
T ss_pred             CEEEcCCCCCC-----CC-cccccCCCCCEEECCCCccCcchhhhhhhhcccccccccccccccCc-c-ccccccCeEEC
Confidence            56777777654     12 24789999999999999999999999999999999999999999975 7 99999999999


Q ss_pred             cCCCCCcCCC
Q 037304          246 PFSYIDHTVD  255 (257)
Q Consensus       246 ~~~~l~~lP~  255 (257)
                      ++|++..+|.
T Consensus        73 ~~N~i~~~~~   82 (124)
T d1dcea3          73 CNNRLQQSAA   82 (124)
T ss_dssp             CSSCCCSSST
T ss_pred             CCCccCCCCC
Confidence            9999887764

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.04  E-value=1.3e-10  Score=87.74  Aligned_cols=107  Identities=17%  Similarity=0.069  Sum_probs=85.0

Q ss_pred             CcEEEEEEeCCCCcc-ccc-cCCCCCccEEEeecCCCCCCCcccchHhhccCcccceEEEeCCCCccCchhc-CCCCCCc
Q 037304          141 ENVKRFTAHGNLNDF-AFL-DHFDSFLHSLLHLTSGSHYLNPTYCEKICKMFKFLRVLDLGSLVLIRYPFEI-ENLFLLR  217 (257)
Q Consensus       141 ~~~r~L~~~~~~~~~-~~~-~~~~~~Lrsl~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~l~~lp~~i-~~L~~L~  217 (257)
                      .+.|.|.+.++.... +.. ..+. +|+.|.+.++...    .+  +.|..+++|+.|++++|.++.+|..+ ..+++|+
T Consensus        18 ~~lr~L~L~~n~I~~i~~~~~~l~-~L~~L~Ls~N~i~----~l--~~~~~l~~L~~L~ls~N~i~~l~~~~~~~l~~L~   90 (162)
T d1a9na_          18 VRDRELDLRGYKIPVIENLGATLD-QFDAIDFSDNEIR----KL--DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLT   90 (162)
T ss_dssp             TSCEEEECTTSCCCSCCCGGGGTT-CCSEEECCSSCCC----EE--CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCC
T ss_pred             CcCcEEECCCCCCCccCccccccc-cCCEEECCCCCCC----cc--CCcccCcchhhhhcccccccCCCccccccccccc
Confidence            467888888877654 332 4567 8999999988764    22  34788999999999999999887654 5689999


Q ss_pred             EEEccCCCccccch--hHHhcCccccEeeccCCCCCcCCC
Q 037304          218 YLHLNIPSLKSLPS--SLLNSLLNLYTLDKPFSYIDHTVD  255 (257)
Q Consensus       218 ~L~l~~~~l~~lP~--~i~~~L~~L~~L~l~~~~l~~lP~  255 (257)
                      .|++++|.+..++.  .+ ..+++|++|++++|.+.++|.
T Consensus        91 ~L~L~~N~i~~~~~l~~l-~~l~~L~~L~l~~N~i~~~~~  129 (162)
T d1a9na_          91 ELILTNNSLVELGDLDPL-ASLKSLTYLCILRNPVTNKKH  129 (162)
T ss_dssp             EEECCSCCCCCGGGGGGG-GGCTTCCEEECCSSGGGGSTT
T ss_pred             cceecccccccccccccc-ccccccchhhcCCCccccccc
Confidence            99999999988875  56 889999999999998877763

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.03  E-value=1.8e-10  Score=89.21  Aligned_cols=106  Identities=12%  Similarity=0.068  Sum_probs=84.0

Q ss_pred             CcEEEEEEeCCCCc-c---ccccCCCCCccEEEeecCCCCCCCcccchHhhccCcccceEEEeCCCCccCc-hhcCCCCC
Q 037304          141 ENVKRFTAHGNLND-F---AFLDHFDSFLHSLLHLTSGSHYLNPTYCEKICKMFKFLRVLDLGSLVLIRYP-FEIENLFL  215 (257)
Q Consensus       141 ~~~r~L~~~~~~~~-~---~~~~~~~~~Lrsl~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~l~~lp-~~i~~L~~  215 (257)
                      ..+++|.+..+... .   ....++. +|+.|.+.++...    ...+..|..++.|+.|+|++|.+..+| ..+.++++
T Consensus        29 ~~l~~L~Ls~N~i~~~~~~~~f~~l~-~L~~L~L~~N~i~----~~~~~~~~~~~~L~~L~Ls~N~l~~l~~~~F~~l~~  103 (192)
T d1w8aa_          29 LHTTELLLNDNELGRISSDGLFGRLP-HLVKLELKRNQLT----GIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQ  103 (192)
T ss_dssp             TTCSEEECCSCCCCSBCCSCSGGGCT-TCCEEECCSSCCC----CBCTTTTTTCTTCCEEECCSCCCCEECSSSSTTCTT
T ss_pred             CCCCEEEeCCCCCcccccccccCCCc-eEeeeeccccccc----cccccccccccccceeeeccccccccCHHHHhCCCc
Confidence            56788888888764 2   2335677 8889888877653    456678888899999999999988875 45788999


Q ss_pred             CcEEEccCCCccccchhHHhcCccccEeeccCCCCC
Q 037304          216 LRYLHLNIPSLKSLPSSLLNSLLNLYTLDKPFSYID  251 (257)
Q Consensus       216 L~~L~l~~~~l~~lP~~i~~~L~~L~~L~l~~~~l~  251 (257)
                      |++|+|++|.++.+|+..|..+++|++|+|++|.+.
T Consensus       104 L~~L~L~~N~l~~i~~~~f~~l~~L~~l~L~~N~~~  139 (192)
T d1w8aa_         104 LKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFN  139 (192)
T ss_dssp             CCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBC
T ss_pred             ccccccCCccccccCHHHhcCCcccccccccccccc
Confidence            999999999999888776588899999999888754

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=98.99  E-value=4.2e-10  Score=87.00  Aligned_cols=90  Identities=18%  Similarity=0.128  Sum_probs=78.4

Q ss_pred             CccEEEeecCCCCCCCcccchHhhccCcccceEEEeCCCCccC-chhcCCCCCCcEEEccCCCccccchhHHhcCccccE
Q 037304          164 FLHSLLHLTSGSHYLNPTYCEKICKMFKFLRVLDLGSLVLIRY-PFEIENLFLLRYLHLNIPSLKSLPSSLLNSLLNLYT  242 (257)
Q Consensus       164 ~Lrsl~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~l~~l-p~~i~~L~~L~~L~l~~~~l~~lP~~i~~~L~~L~~  242 (257)
                      .++.|.+.++...   ....+..|.++++|+.|++++|.+..+ +..+..+++|++|++++|.++.+|+..|.+|++|++
T Consensus        30 ~l~~L~Ls~N~i~---~~~~~~~f~~l~~L~~L~L~~N~i~~~~~~~~~~~~~L~~L~Ls~N~l~~l~~~~F~~l~~L~~  106 (192)
T d1w8aa_          30 HTTELLLNDNELG---RISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKT  106 (192)
T ss_dssp             TCSEEECCSCCCC---SBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCCCCEECSSSSTTCTTCCE
T ss_pred             CCCEEEeCCCCCc---ccccccccCCCceEeeeeccccccccccccccccccccceeeeccccccccCHHHHhCCCcccc
Confidence            8999999998763   234567889999999999999998866 577888999999999999999998876699999999


Q ss_pred             eeccCCCCCcCCCC
Q 037304          243 LDKPFSYIDHTVDE  256 (257)
Q Consensus       243 L~l~~~~l~~lP~~  256 (257)
                      |+|++|++..+|++
T Consensus       107 L~L~~N~l~~i~~~  120 (192)
T d1w8aa_         107 LNLYDNQISCVMPG  120 (192)
T ss_dssp             EECCSSCCCEECTT
T ss_pred             cccCCccccccCHH
Confidence            99999999988764

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.90  E-value=1.1e-09  Score=82.34  Aligned_cols=98  Identities=15%  Similarity=0.063  Sum_probs=53.1

Q ss_pred             CcEEEEEEeCCCCcc-ccccCCCCCccEEEeecCCCCCCCcccchHhhccCcccceEEEeCCCCccCch--hcCCCCCCc
Q 037304          141 ENVKRFTAHGNLNDF-AFLDHFDSFLHSLLHLTSGSHYLNPTYCEKICKMFKFLRVLDLGSLVLIRYPF--EIENLFLLR  217 (257)
Q Consensus       141 ~~~r~L~~~~~~~~~-~~~~~~~~~Lrsl~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~l~~lp~--~i~~L~~L~  217 (257)
                      ..+++|.+.++.... +....++ +|++|.+.++...    .+.+..+..+++|+.|++++|.+..+++  .+..+++|+
T Consensus        41 ~~L~~L~Ls~N~i~~l~~~~~l~-~L~~L~ls~N~i~----~l~~~~~~~l~~L~~L~L~~N~i~~~~~l~~l~~l~~L~  115 (162)
T d1a9na_          41 DQFDAIDFSDNEIRKLDGFPLLR-RLKTLLVNNNRIC----RIGEGLDQALPDLTELILTNNSLVELGDLDPLASLKSLT  115 (162)
T ss_dssp             TCCSEEECCSSCCCEECCCCCCS-SCCEEECCSSCCC----EECSCHHHHCTTCCEEECCSCCCCCGGGGGGGGGCTTCC
T ss_pred             ccCCEEECCCCCCCccCCcccCc-chhhhhccccccc----CCCccccccccccccceeccccccccccccccccccccc
Confidence            445555555554432 3334455 6666666555542    2333445556666666666666655542  455566666


Q ss_pred             EEEccCCCccccch----hHHhcCccccEee
Q 037304          218 YLHLNIPSLKSLPS----SLLNSLLNLYTLD  244 (257)
Q Consensus       218 ~L~l~~~~l~~lP~----~i~~~L~~L~~L~  244 (257)
                      +|++++|.+..+|.    .+ ..+++|++||
T Consensus       116 ~L~l~~N~i~~~~~~r~~~i-~~lp~L~~LD  145 (162)
T d1a9na_         116 YLCILRNPVTNKKHYRLYVI-YKVPQVRVLD  145 (162)
T ss_dssp             EEECCSSGGGGSTTHHHHHH-HHCTTCSEET
T ss_pred             hhhcCCCccccccchHHHHH-HHCCCcCeeC
Confidence            66666666655553    23 5566666665

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.90  E-value=2.5e-09  Score=86.72  Aligned_cols=67  Identities=19%  Similarity=-0.016  Sum_probs=39.7

Q ss_pred             cchHhhccCcccceEEEeCCCCccCc-hhcCCCCCCcEEEccCCCccccchhHHhcCccccEeeccCCC
Q 037304          182 YCEKICKMFKFLRVLDLGSLVLIRYP-FEIENLFLLRYLHLNIPSLKSLPSSLLNSLLNLYTLDKPFSY  249 (257)
Q Consensus       182 ~~~~~~~~l~~Lr~L~L~~~~l~~lp-~~i~~L~~L~~L~l~~~~l~~lP~~i~~~L~~L~~L~l~~~~  249 (257)
                      +.+..+..++.|+.|++++|.++.+| ..++.+++|++|+|++|.++.+|+++ ..+.+|+.|+|++|.
T Consensus       139 l~~~~~~~l~~l~~l~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~L~~lp~~~-~~~~~L~~L~L~~Np  206 (266)
T d1p9ag_         139 LPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLYTIPKGF-FGSHLLPFAFLHGNP  206 (266)
T ss_dssp             CCTTTTTTCTTCCEEECTTSCCSCCCTTTTTTCTTCCEEECCSSCCCCCCTTT-TTTCCCSEEECCSCC
T ss_pred             eccccccccccchhcccccccccccCccccccccccceeecccCCCcccChhH-CCCCCCCEEEecCCC
Confidence            33445555666666666666666554 33555666666666666666666666 556666666666553

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=98.89  E-value=2.7e-09  Score=87.97  Aligned_cols=107  Identities=16%  Similarity=-0.039  Sum_probs=55.8

Q ss_pred             cEEEEEEeCCCCccccccCCCCCccEEEeecCCCCCCCcccchHhhccCcccceEEEeCCCCccC-chhcCCCCCCcEEE
Q 037304          142 NVKRFTAHGNLNDFAFLDHFDSFLHSLLHLTSGSHYLNPTYCEKICKMFKFLRVLDLGSLVLIRY-PFEIENLFLLRYLH  220 (257)
Q Consensus       142 ~~r~L~~~~~~~~~~~~~~~~~~Lrsl~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~l~~l-p~~i~~L~~L~~L~  220 (257)
                      .++.+.+..+.........++ +++.|.+.++...    ...+..|.+++.+++|++++|.+..+ |..+.++++|++|+
T Consensus       151 ~L~~l~l~~n~l~~l~~~~~~-~L~~L~l~~n~~~----~~~~~~~~~~~~l~~L~~s~n~l~~~~~~~~~~l~~L~~L~  225 (305)
T d1xkua_         151 KLSYIRIADTNITTIPQGLPP-SLTELHLDGNKIT----KVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELH  225 (305)
T ss_dssp             TCCEEECCSSCCCSCCSSCCT-TCSEEECTTSCCC----EECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEE
T ss_pred             ccCccccccCCccccCcccCC-ccCEEECCCCcCC----CCChhHhhccccccccccccccccccccccccccccceeee
Confidence            344444444433221122234 5666655554432    23344555555666666666655544 34455556666666


Q ss_pred             ccCCCccccchhHHhcCccccEeeccCCCCCcCC
Q 037304          221 LNIPSLKSLPSSLLNSLLNLYTLDKPFSYIDHTV  254 (257)
Q Consensus       221 l~~~~l~~lP~~i~~~L~~L~~L~l~~~~l~~lP  254 (257)
                      |++|.++.+|.++ .++++|++|++++|+++.+|
T Consensus       226 L~~N~L~~lp~~l-~~l~~L~~L~Ls~N~i~~i~  258 (305)
T d1xkua_         226 LNNNKLVKVPGGL-ADHKYIQVVYLHNNNISAIG  258 (305)
T ss_dssp             CCSSCCSSCCTTT-TTCSSCCEEECCSSCCCCCC
T ss_pred             ccccccccccccc-ccccCCCEEECCCCccCccC
Confidence            6666666666555 55666666666665555554

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.88  E-value=2.6e-09  Score=79.80  Aligned_cols=88  Identities=19%  Similarity=-0.005  Sum_probs=72.9

Q ss_pred             ccCCCCCccEEEeecCCCCCCCcccchHhhccCcccceEEEeCCCCccC-chhcCCCCCCcEEEccCCCccccchhHHhc
Q 037304          158 LDHFDSFLHSLLHLTSGSHYLNPTYCEKICKMFKFLRVLDLGSLVLIRY-PFEIENLFLLRYLHLNIPSLKSLPSSLLNS  236 (257)
Q Consensus       158 ~~~~~~~Lrsl~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~l~~l-p~~i~~L~~L~~L~l~~~~l~~lP~~i~~~  236 (257)
                      ....+ +++.|.+.++..   ...+.+..|.++++|+.|++++|.++.+ |..+..+++|++|+|++|.++.+|.++ ..
T Consensus        27 l~~l~-~l~~L~l~~n~~---l~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~Ls~N~l~~l~~~~-~~  101 (156)
T d2ifga3          27 LPGAE-NLTELYIENQQH---LQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNALESLSWKT-VQ  101 (156)
T ss_dssp             SCSCS-CCSEEECCSCSS---CCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSSCCSCCCSTT-TC
T ss_pred             ccCcc-ccCeeecCCCcc---ccccCchhhccccccCcceeeccccCCcccccccccccccceeccCCCCcccChhh-hc
Confidence            34566 888888876543   3356677899999999999999999988 566889999999999999999999998 55


Q ss_pred             CccccEeeccCCCC
Q 037304          237 LLNLYTLDKPFSYI  250 (257)
Q Consensus       237 L~~L~~L~l~~~~l  250 (257)
                      ..+|+.|+|++|.+
T Consensus       102 ~~~l~~L~L~~Np~  115 (156)
T d2ifga3         102 GLSLQELVLSGNPL  115 (156)
T ss_dssp             SCCCCEEECCSSCC
T ss_pred             cccccccccCCCcc
Confidence            56899999998865

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.79  E-value=9.3e-09  Score=76.70  Aligned_cols=74  Identities=15%  Similarity=0.067  Sum_probs=64.7

Q ss_pred             chHhhccCcccceEEEeCCC-CccCc-hhcCCCCCCcEEEccCCCccccchhHHhcCccccEeeccCCCCCcCCCC
Q 037304          183 CEKICKMFKFLRVLDLGSLV-LIRYP-FEIENLFLLRYLHLNIPSLKSLPSSLLNSLLNLYTLDKPFSYIDHTVDE  256 (257)
Q Consensus       183 ~~~~~~~l~~Lr~L~L~~~~-l~~lp-~~i~~L~~L~~L~l~~~~l~~lP~~i~~~L~~L~~L~l~~~~l~~lP~~  256 (257)
                      .+..+..+++|+.|+++++. ++.++ ..+.++++|+.|++++|+++.+|+..|..+++|++|+|++|+++.+|.+
T Consensus        23 ~p~~l~~l~~l~~L~l~~n~~l~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~Ls~N~l~~l~~~   98 (156)
T d2ifga3          23 SLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNALESLSWK   98 (156)
T ss_dssp             TTTTSCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSSCCSCCCST
T ss_pred             CcccccCccccCeeecCCCccccccCchhhccccccCcceeeccccCCcccccccccccccceeccCCCCcccChh
Confidence            34567788999999998775 88885 6689999999999999999999776559999999999999999999875

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=98.77  E-value=1.9e-08  Score=77.84  Aligned_cols=104  Identities=17%  Similarity=0.124  Sum_probs=80.1

Q ss_pred             CcEEEEEEeCCCCcc-ccccCCCCCccEEEeecCCCCCCCcccchHhhccCcccceEEEeCCCCccCchhcCCCCCCcEE
Q 037304          141 ENVKRFTAHGNLNDF-AFLDHFDSFLHSLLHLTSGSHYLNPTYCEKICKMFKFLRVLDLGSLVLIRYPFEIENLFLLRYL  219 (257)
Q Consensus       141 ~~~r~L~~~~~~~~~-~~~~~~~~~Lrsl~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~l~~lp~~i~~L~~L~~L  219 (257)
                      .+++.+.+..+.... +....++ .|+.+.+.++...      ....+..+++|+.|++++|.+..+| .+..+++|++|
T Consensus        84 ~~L~~L~l~~n~~~~~~~l~~l~-~L~~L~l~~~~~~------~~~~~~~l~~L~~L~l~~n~l~~~~-~l~~~~~L~~L  155 (199)
T d2omxa2          84 TKLVDILMNNNQIADITPLANLT-NLTGLTLFNNQIT------DIDPLKNLTNLNRLELSSNTISDIS-ALSGLTSLQQL  155 (199)
T ss_dssp             TTCCEEECCSSCCCCCGGGTTCT-TCSEEECCSSCCC------CCGGGTTCTTCSEEECCSSCCCCCG-GGTTCTTCSEE
T ss_pred             ccccccccccccccccccccccc-ccccccccccccc------cccccchhhhhHHhhhhhhhhcccc-ccccccccccc
Confidence            456677666655433 4455666 7777777665543      1245778899999999999988765 58889999999


Q ss_pred             EccCCCccccchhHHhcCccccEeeccCCCCCcCC
Q 037304          220 HLNIPSLKSLPSSLLNSLLNLYTLDKPFSYIDHTV  254 (257)
Q Consensus       220 ~l~~~~l~~lP~~i~~~L~~L~~L~l~~~~l~~lP  254 (257)
                      ++.+|.++.+|. + +++++|++|++++|+++++|
T Consensus       156 ~l~~n~l~~l~~-l-~~l~~L~~L~ls~N~i~~i~  188 (199)
T d2omxa2         156 NFSSNQVTDLKP-L-ANLTTLERLDISSNKVSDIS  188 (199)
T ss_dssp             ECCSSCCCCCGG-G-TTCTTCCEEECCSSCCCCCG
T ss_pred             ccccccccCCcc-c-cCCCCCCEEECCCCCCCCCc
Confidence            999999998874 6 89999999999999988776

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.73  E-value=1.5e-08  Score=82.04  Aligned_cols=112  Identities=21%  Similarity=0.048  Sum_probs=92.5

Q ss_pred             CcEEEEEEeCCCCcc--ccccCCCCCccEEEeecCCCCCCCcccchHhhccCcccceEEEeCCCCccCch-hcCCCCCCc
Q 037304          141 ENVKRFTAHGNLNDF--AFLDHFDSFLHSLLHLTSGSHYLNPTYCEKICKMFKFLRVLDLGSLVLIRYPF-EIENLFLLR  217 (257)
Q Consensus       141 ~~~r~L~~~~~~~~~--~~~~~~~~~Lrsl~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~l~~lp~-~i~~L~~L~  217 (257)
                      ..++.|.+..+....  .....++ +|+.|.+.++...    ...+..+..+.+++.|++++|.+..+|. .+..+++|+
T Consensus        77 ~~L~~L~Ls~N~l~~~~~~~~~l~-~L~~L~l~~~~~~----~~~~~~~~~l~~l~~L~l~~n~l~~l~~~~~~~l~~l~  151 (266)
T d1p9ag_          77 PVLGTLDLSHNQLQSLPLLGQTLP-ALTVLDVSFNRLT----SLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLE  151 (266)
T ss_dssp             TTCCEEECCSSCCSSCCCCTTTCT-TCCEEECCSSCCC----CCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCC
T ss_pred             cccccccccccccccccccccccc-ccccccccccccc----eeeccccccccccccccccccccceeccccccccccch
Confidence            667888887776543  3445677 9999999877653    4556778899999999999999998864 456789999


Q ss_pred             EEEccCCCccccchhHHhcCccccEeeccCCCCCcCCCCC
Q 037304          218 YLHLNIPSLKSLPSSLLNSLLNLYTLDKPFSYIDHTVDEF  257 (257)
Q Consensus       218 ~L~l~~~~l~~lP~~i~~~L~~L~~L~l~~~~l~~lP~~i  257 (257)
                      +|++++|+++.+|...|+.+++|++|+|++|+++.+|+++
T Consensus       152 ~l~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~L~~lp~~~  191 (266)
T d1p9ag_         152 KLSLANNNLTELPAGLLNGLENLDTLLLQENSLYTIPKGF  191 (266)
T ss_dssp             EEECTTSCCSCCCTTTTTTCTTCCEEECCSSCCCCCCTTT
T ss_pred             hcccccccccccCccccccccccceeecccCCCcccChhH
Confidence            9999999999998775589999999999999999999764

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=98.68  E-value=2.1e-08  Score=82.45  Aligned_cols=110  Identities=13%  Similarity=0.046  Sum_probs=87.8

Q ss_pred             CcEEEEEEeCCCCcc---ccccCCCCCccEEEeecCCCCCCCcccchHhhccCcccceEEEeCCCCccCchhcCCCCCCc
Q 037304          141 ENVKRFTAHGNLNDF---AFLDHFDSFLHSLLHLTSGSHYLNPTYCEKICKMFKFLRVLDLGSLVLIRYPFEIENLFLLR  217 (257)
Q Consensus       141 ~~~r~L~~~~~~~~~---~~~~~~~~~Lrsl~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~l~~lp~~i~~L~~L~  217 (257)
                      .+++++.+..+....   .....+. .+++|.+.++...    ...+..+.++++|++|+|++|.++.+|.++..+++|+
T Consensus       171 ~~L~~L~l~~n~~~~~~~~~~~~~~-~l~~L~~s~n~l~----~~~~~~~~~l~~L~~L~L~~N~L~~lp~~l~~l~~L~  245 (305)
T d1xkua_         171 PSLTELHLDGNKITKVDAASLKGLN-NLAKLGLSFNSIS----AVDNGSLANTPHLRELHLNNNKLVKVPGGLADHKYIQ  245 (305)
T ss_dssp             TTCSEEECTTSCCCEECTGGGTTCT-TCCEEECCSSCCC----EECTTTGGGSTTCCEEECCSSCCSSCCTTTTTCSSCC
T ss_pred             CccCEEECCCCcCCCCChhHhhccc-ccccccccccccc----ccccccccccccceeeecccccccccccccccccCCC
Confidence            567788777665442   3445667 8899988877653    4567888999999999999999999999999999999


Q ss_pred             EEEccCCCccccchhHH------hcCccccEeeccCCCCC--cCCC
Q 037304          218 YLHLNIPSLKSLPSSLL------NSLLNLYTLDKPFSYID--HTVD  255 (257)
Q Consensus       218 ~L~l~~~~l~~lP~~i~------~~L~~L~~L~l~~~~l~--~lP~  255 (257)
                      +|++++|.++.++...|      ..+.+|+.|++.+|.++  ++|+
T Consensus       246 ~L~Ls~N~i~~i~~~~f~~~~~~~~~~~L~~L~L~~N~~~~~~~~~  291 (305)
T d1xkua_         246 VVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQP  291 (305)
T ss_dssp             EEECCSSCCCCCCTTSSSCSSCCTTSCCCSEEECCSSSSCGGGSCG
T ss_pred             EEECCCCccCccChhhccCcchhcccCCCCEEECCCCcCccCcCCH
Confidence            99999999998875432      45788999999999865  4543

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=98.65  E-value=1.2e-08  Score=84.30  Aligned_cols=109  Identities=18%  Similarity=0.105  Sum_probs=87.7

Q ss_pred             CcEEEEEEeCCCCc----c-ccccCCCCCccEEEeec-CCCCCCCcccchHhhccCcccceEEEeCCCCccC-chhcCCC
Q 037304          141 ENVKRFTAHGNLND----F-AFLDHFDSFLHSLLHLT-SGSHYLNPTYCEKICKMFKFLRVLDLGSLVLIRY-PFEIENL  213 (257)
Q Consensus       141 ~~~r~L~~~~~~~~----~-~~~~~~~~~Lrsl~l~~-~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~l~~l-p~~i~~L  213 (257)
                      .+++.|.+.+....    . +...+++ +|+.|.+.+ +..    .+.+|..+.++++|++|+|++|.+..+ |..+..+
T Consensus        50 ~~v~~L~L~~~~l~g~~~lp~~l~~L~-~L~~L~Ls~~N~l----~g~iP~~i~~L~~L~~L~Ls~N~l~~~~~~~~~~~  124 (313)
T d1ogqa_          50 YRVNNLDLSGLNLPKPYPIPSSLANLP-YLNFLYIGGINNL----VGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQI  124 (313)
T ss_dssp             CCEEEEEEECCCCSSCEECCGGGGGCT-TCSEEEEEEETTE----ESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGC
T ss_pred             EEEEEEECCCCCCCCCCCCChHHhcCc-ccccccccccccc----ccccccccccccccchhhhccccccccccccccch
Confidence            46888888886543    2 4567788 999999986 333    224677899999999999999998855 5678889


Q ss_pred             CCCcEEEccCCCc-cccchhHHhcCccccEeeccCCCCC-cCCC
Q 037304          214 FLLRYLHLNIPSL-KSLPSSLLNSLLNLYTLDKPFSYID-HTVD  255 (257)
Q Consensus       214 ~~L~~L~l~~~~l-~~lP~~i~~~L~~L~~L~l~~~~l~-~lP~  255 (257)
                      .+|++++++.|.+ ..+|.++ +++++|+++++++|.+. .+|.
T Consensus       125 ~~L~~l~l~~N~~~~~~p~~l-~~l~~L~~l~l~~n~l~~~ip~  167 (313)
T d1ogqa_         125 KTLVTLDFSYNALSGTLPPSI-SSLPNLVGITFDGNRISGAIPD  167 (313)
T ss_dssp             TTCCEEECCSSEEESCCCGGG-GGCTTCCEEECCSSCCEEECCG
T ss_pred             hhhcccccccccccccCchhh-ccCcccceeecccccccccccc
Confidence            9999999999874 4789999 99999999999999865 6665

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=98.61  E-value=1.1e-07  Score=74.69  Aligned_cols=66  Identities=20%  Similarity=0.170  Sum_probs=52.6

Q ss_pred             hhccCcccceEEEeCCCCccCchhcCCCCCCcEEEccCCCccccchhHHhcCccccEeeccCCCCCcCC
Q 037304          186 ICKMFKFLRVLDLGSLVLIRYPFEIENLFLLRYLHLNIPSLKSLPSSLLNSLLNLYTLDKPFSYIDHTV  254 (257)
Q Consensus       186 ~~~~l~~Lr~L~L~~~~l~~lp~~i~~L~~L~~L~l~~~~l~~lP~~i~~~L~~L~~L~l~~~~l~~lP  254 (257)
                      .+..+++|+.|++++|.+...+. ++++++|+.|++++|.++.+|. + +++++|++|++++|+++++|
T Consensus       146 ~~~~~~~L~~L~l~~n~~~~~~~-l~~l~~L~~L~Ls~n~l~~l~~-l-~~l~~L~~L~Ls~N~lt~i~  211 (227)
T d1h6ua2         146 PLAGLTNLQYLSIGNAQVSDLTP-LANLSKLTTLKADDNKISDISP-L-ASLPNLIEVHLKNNQISDVS  211 (227)
T ss_dssp             GGGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCCCGG-G-GGCTTCCEEECTTSCCCBCG
T ss_pred             hhccccccccccccccccccchh-hcccccceecccCCCccCCChh-h-cCCCCCCEEECcCCcCCCCc
Confidence            46677888888888888765543 7888888888888888888765 5 78888888888888877776

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=98.58  E-value=7.2e-08  Score=75.89  Aligned_cols=97  Identities=14%  Similarity=0.027  Sum_probs=74.1

Q ss_pred             CcEEEEEEeCCCCcc-ccccCCCCCccEEEeecCCCCCCCcccchHhhccCcccceEEEeCCCCccCchhcCCCCCCcEE
Q 037304          141 ENVKRFTAHGNLNDF-AFLDHFDSFLHSLLHLTSGSHYLNPTYCEKICKMFKFLRVLDLGSLVLIRYPFEIENLFLLRYL  219 (257)
Q Consensus       141 ~~~r~L~~~~~~~~~-~~~~~~~~~Lrsl~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~l~~lp~~i~~L~~L~~L  219 (257)
                      ...+.+.+....... .....+. +++.|.+.++...    .  ...+.++++|+.|++++|.++.+|. ++++++|++|
T Consensus       129 ~~~~~l~~~~~~~~~~~~~~~~~-~L~~L~l~~n~~~----~--~~~l~~l~~L~~L~Ls~n~l~~l~~-l~~l~~L~~L  200 (227)
T d1h6ua2         129 SNLQVLYLDLNQITNISPLAGLT-NLQYLSIGNAQVS----D--LTPLANLSKLTTLKADDNKISDISP-LASLPNLIEV  200 (227)
T ss_dssp             TTCCEEECCSSCCCCCGGGGGCT-TCCEEECCSSCCC----C--CGGGTTCTTCCEEECCSSCCCCCGG-GGGCTTCCEE
T ss_pred             cchhhhhchhhhhchhhhhcccc-ccccccccccccc----c--chhhcccccceecccCCCccCCChh-hcCCCCCCEE
Confidence            344444444433322 3455667 8888888776543    1  2347899999999999999998865 8899999999


Q ss_pred             EccCCCccccchhHHhcCccccEeeccC
Q 037304          220 HLNIPSLKSLPSSLLNSLLNLYTLDKPF  247 (257)
Q Consensus       220 ~l~~~~l~~lP~~i~~~L~~L~~L~l~~  247 (257)
                      ++++|+++.+|+ + +++++|++|++++
T Consensus       201 ~Ls~N~lt~i~~-l-~~l~~L~~L~lsn  226 (227)
T d1h6ua2         201 HLKNNQISDVSP-L-ANTSNLFIVTLTN  226 (227)
T ss_dssp             ECTTSCCCBCGG-G-TTCTTCCEEEEEE
T ss_pred             ECcCCcCCCCcc-c-ccCCCCCEEEeeC
Confidence            999999999985 7 9999999999974

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=98.58  E-value=6.3e-08  Score=79.84  Aligned_cols=87  Identities=18%  Similarity=0.183  Sum_probs=46.3

Q ss_pred             ccCCCCCccEEEeecCCCCCCCcccchHhhccCcccceEEEeCCCCc-cCchhcCCCCCCcEEEccCCCcc-ccchhHHh
Q 037304          158 LDHFDSFLHSLLHLTSGSHYLNPTYCEKICKMFKFLRVLDLGSLVLI-RYPFEIENLFLLRYLHLNIPSLK-SLPSSLLN  235 (257)
Q Consensus       158 ~~~~~~~Lrsl~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~l~-~lp~~i~~L~~L~~L~l~~~~l~-~lP~~i~~  235 (257)
                      ..+++ +|++|.+.++...    ...+..+..+..|++++++.|.+. .+|.+++++++|+++++++|.+. .+|..+ +
T Consensus        97 i~~L~-~L~~L~Ls~N~l~----~~~~~~~~~~~~L~~l~l~~N~~~~~~p~~l~~l~~L~~l~l~~n~l~~~ip~~~-~  170 (313)
T d1ogqa_          97 IAKLT-QLHYLYITHTNVS----GAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSY-G  170 (313)
T ss_dssp             GGGCT-TCSEEEEEEECCE----EECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGG-G
T ss_pred             ccccc-ccchhhhcccccc----ccccccccchhhhcccccccccccccCchhhccCcccceeecccccccccccccc-c
Confidence            34455 5556655555432    233444555555666666555533 44555555666666666555544 455555 5


Q ss_pred             cCccc-cEeeccCCCC
Q 037304          236 SLLNL-YTLDKPFSYI  250 (257)
Q Consensus       236 ~L~~L-~~L~l~~~~l  250 (257)
                      .+.++ +.+++++|++
T Consensus       171 ~l~~l~~~l~~~~n~l  186 (313)
T d1ogqa_         171 SFSKLFTSMTISRNRL  186 (313)
T ss_dssp             CCCTTCCEEECCSSEE
T ss_pred             cccccccccccccccc
Confidence            55544 5555555543

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=98.58  E-value=1.2e-07  Score=73.90  Aligned_cols=104  Identities=19%  Similarity=0.106  Sum_probs=59.9

Q ss_pred             CcEEEEEEeCCCCc-cccccCCCCCccEEEeecCCCCCCCcccchHhhccCcccceEEEeCCCCccCchhcCCCCCCcEE
Q 037304          141 ENVKRFTAHGNLND-FAFLDHFDSFLHSLLHLTSGSHYLNPTYCEKICKMFKFLRVLDLGSLVLIRYPFEIENLFLLRYL  219 (257)
Q Consensus       141 ~~~r~L~~~~~~~~-~~~~~~~~~~Lrsl~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~l~~lp~~i~~L~~L~~L  219 (257)
                      .+++.|.+..+... .+....++ +|+.+.+.++....      ...+..++.++.++++++.+...+ .++.+++|+++
T Consensus        90 ~~L~~L~l~~n~i~~l~~l~~l~-~L~~L~l~~~~~~~------~~~l~~l~~l~~l~~~~n~l~~~~-~~~~l~~L~~l  161 (210)
T d1h6ta2          90 KNLGWLFLDENKVKDLSSLKDLK-KLKSLSLEHNGISD------INGLVHLPQLESLYLGNNKITDIT-VLSRLTKLDTL  161 (210)
T ss_dssp             TTCCEEECCSSCCCCGGGGTTCT-TCCEEECTTSCCCC------CGGGGGCTTCCEEECCSSCCCCCG-GGGGCTTCSEE
T ss_pred             ccccccccccccccccccccccc-cccccccccccccc------cccccccccccccccccccccccc-ccccccccccc
Confidence            44555555554433 23444555 66666655544321      123455555555555555554432 35566777777


Q ss_pred             EccCCCccccchhHHhcCccccEeeccCCCCCcCC
Q 037304          220 HLNIPSLKSLPSSLLNSLLNLYTLDKPFSYIDHTV  254 (257)
Q Consensus       220 ~l~~~~l~~lP~~i~~~L~~L~~L~l~~~~l~~lP  254 (257)
                      ++++|.++.++. + +++++|+.|++++|.++++|
T Consensus       162 ~l~~n~l~~i~~-l-~~l~~L~~L~Ls~N~i~~l~  194 (210)
T d1h6ta2         162 SLEDNQISDIVP-L-AGLTKLQNLYLSKNHISDLR  194 (210)
T ss_dssp             ECCSSCCCCCGG-G-TTCTTCCEEECCSSCCCBCG
T ss_pred             cccccccccccc-c-cCCCCCCEEECCCCCCCCCh
Confidence            777777776654 5 67777777777777766665

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.56  E-value=8.6e-08  Score=78.00  Aligned_cols=104  Identities=18%  Similarity=0.097  Sum_probs=59.2

Q ss_pred             CcEEEEEEeCCCCcc-c--cccCCCCCccEEEeecCCCCCCCcccchHhhccCcccceEEEeCCCCccC-chhcCCCCCC
Q 037304          141 ENVKRFTAHGNLNDF-A--FLDHFDSFLHSLLHLTSGSHYLNPTYCEKICKMFKFLRVLDLGSLVLIRY-PFEIENLFLL  216 (257)
Q Consensus       141 ~~~r~L~~~~~~~~~-~--~~~~~~~~Lrsl~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~l~~l-p~~i~~L~~L  216 (257)
                      ..++.+.+..+.... +  ...... +++.|.+.++...    .+.+..|.++++|+.+++++|.+..+ |..++.+++|
T Consensus       129 ~~L~~l~l~~N~l~~i~~~~f~~~~-~L~~L~l~~N~l~----~l~~~~f~~l~~L~~l~l~~N~l~~i~~~~f~~l~~L  203 (284)
T d1ozna_         129 AALQYLYLQDNALQALPDDTFRDLG-NLTHLFLHGNRIS----SVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRL  203 (284)
T ss_dssp             TTCCEEECCSSCCCCCCTTTTTTCT-TCCEEECCSSCCC----EECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTC
T ss_pred             cccchhhhccccccccChhHhcccc-chhhcccccCccc----ccchhhhccccccchhhhhhccccccChhHhhhhhhc
Confidence            334455554444332 1  123444 5666666555432    34455666666666666666665543 5666666666


Q ss_pred             cEEEccCCCccccchhHHhcCccccEeeccCCC
Q 037304          217 RYLHLNIPSLKSLPSSLLNSLLNLYTLDKPFSY  249 (257)
Q Consensus       217 ~~L~l~~~~l~~lP~~i~~~L~~L~~L~l~~~~  249 (257)
                      ++|++++|.+..+|...|+++.+|++|++++|.
T Consensus       204 ~~L~l~~N~i~~~~~~~~~~~~~L~~L~l~~N~  236 (284)
T d1ozna_         204 MTLYLFANNLSALPTEALAPLRALQYLRLNDNP  236 (284)
T ss_dssp             CEEECCSSCCSCCCHHHHTTCTTCCEEECCSSC
T ss_pred             ccccccccccccccccccccccccCEEEecCCC
Confidence            666666666666655444666666666666654

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=98.54  E-value=1.2e-07  Score=73.79  Aligned_cols=97  Identities=21%  Similarity=0.089  Sum_probs=78.9

Q ss_pred             CcEEEEEEeCCCCcc-ccccCCCCCccEEEeecCCCCCCCcccchHhhccCcccceEEEeCCCCccCchhcCCCCCCcEE
Q 037304          141 ENVKRFTAHGNLNDF-AFLDHFDSFLHSLLHLTSGSHYLNPTYCEKICKMFKFLRVLDLGSLVLIRYPFEIENLFLLRYL  219 (257)
Q Consensus       141 ~~~r~L~~~~~~~~~-~~~~~~~~~Lrsl~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~l~~lp~~i~~L~~L~~L  219 (257)
                      .+++.+.+..+.... +....++ .++.+.+..+...      ....+..+++|+++++++|.+..++. ++++++|+.|
T Consensus       112 ~~L~~L~l~~~~~~~~~~l~~l~-~l~~l~~~~n~l~------~~~~~~~l~~L~~l~l~~n~l~~i~~-l~~l~~L~~L  183 (210)
T d1h6ta2         112 KKLKSLSLEHNGISDINGLVHLP-QLESLYLGNNKIT------DITVLSRLTKLDTLSLEDNQISDIVP-LAGLTKLQNL  183 (210)
T ss_dssp             TTCCEEECTTSCCCCCGGGGGCT-TCCEEECCSSCCC------CCGGGGGCTTCSEEECCSSCCCCCGG-GTTCTTCCEE
T ss_pred             ccccccccccccccccccccccc-ccccccccccccc------cccccccccccccccccccccccccc-ccCCCCCCEE
Confidence            567788877765443 5566777 8999888777653      12456789999999999999998765 8999999999


Q ss_pred             EccCCCccccchhHHhcCccccEeeccC
Q 037304          220 HLNIPSLKSLPSSLLNSLLNLYTLDKPF  247 (257)
Q Consensus       220 ~l~~~~l~~lP~~i~~~L~~L~~L~l~~  247 (257)
                      ++++|.++.+| ++ .+|++|++|+|++
T Consensus       184 ~Ls~N~i~~l~-~l-~~l~~L~~L~Ls~  209 (210)
T d1h6ta2         184 YLSKNHISDLR-AL-AGLKNLDVLELFS  209 (210)
T ss_dssp             ECCSSCCCBCG-GG-TTCTTCSEEEEEE
T ss_pred             ECCCCCCCCCh-hh-cCCCCCCEEEccC
Confidence            99999999997 57 9999999999974

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=98.52  E-value=1.3e-07  Score=79.64  Aligned_cols=103  Identities=17%  Similarity=0.064  Sum_probs=46.3

Q ss_pred             CcEEEEEEeCCCCc-cccccCCCCCccEEEeecCCCCCCCcccchHhhccCcccceEEEeCCCCccCchhcCCCCCCcEE
Q 037304          141 ENVKRFTAHGNLND-FAFLDHFDSFLHSLLHLTSGSHYLNPTYCEKICKMFKFLRVLDLGSLVLIRYPFEIENLFLLRYL  219 (257)
Q Consensus       141 ~~~r~L~~~~~~~~-~~~~~~~~~~Lrsl~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~l~~lp~~i~~L~~L~~L  219 (257)
                      ..++.+.+..+... .+....+. .++.+....+....      ...+..+++++.|++++|.++.++. +..+++|++|
T Consensus       263 ~~L~~L~l~~~~l~~~~~~~~~~-~l~~l~~~~n~l~~------~~~~~~~~~l~~L~ls~n~l~~l~~-l~~l~~L~~L  334 (384)
T d2omza2         263 TKLTELKLGANQISNISPLAGLT-ALTNLELNENQLED------ISPISNLKNLTYLTLYFNNISDISP-VSSLTKLQRL  334 (384)
T ss_dssp             TTCSEEECCSSCCCCCGGGTTCT-TCSEEECCSSCCSC------CGGGGGCTTCSEEECCSSCCSCCGG-GGGCTTCCEE
T ss_pred             ccCCEeeccCcccCCCCcccccc-cccccccccccccc------ccccchhcccCeEECCCCCCCCCcc-cccCCCCCEE
Confidence            44455555444332 13333444 45555444433320      1224444445555555555444432 4444555555


Q ss_pred             EccCCCccccchhHHhcCccccEeeccCCCCCcC
Q 037304          220 HLNIPSLKSLPSSLLNSLLNLYTLDKPFSYIDHT  253 (257)
Q Consensus       220 ~l~~~~l~~lP~~i~~~L~~L~~L~l~~~~l~~l  253 (257)
                      ++++|.++.+| ++ +++++|++|++++|++..+
T Consensus       335 ~L~~n~l~~l~-~l-~~l~~L~~L~l~~N~l~~l  366 (384)
T d2omza2         335 FFANNKVSDVS-SL-ANLTNINWLSAGHNQISDL  366 (384)
T ss_dssp             ECCSSCCCCCG-GG-GGCTTCCEEECCSSCCCBC
T ss_pred             ECCCCCCCCCh-hH-cCCCCCCEEECCCCcCCCC
Confidence            55555544444 24 4455555555555444443

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.52  E-value=1.5e-07  Score=76.58  Aligned_cols=109  Identities=14%  Similarity=0.058  Sum_probs=88.3

Q ss_pred             CcEEEEEEeCCCCcc---ccccCCCCCccEEEeecCCCCCCCcccchHhhccCcccceEEEeCCCCccCc-hhcCCCCCC
Q 037304          141 ENVKRFTAHGNLNDF---AFLDHFDSFLHSLLHLTSGSHYLNPTYCEKICKMFKFLRVLDLGSLVLIRYP-FEIENLFLL  216 (257)
Q Consensus       141 ~~~r~L~~~~~~~~~---~~~~~~~~~Lrsl~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~l~~lp-~~i~~L~~L  216 (257)
                      .+++.+.+..+....   ....... +|+++.+.++...    .+.+..|..+++|+.|++++|.++.+| ..+.++++|
T Consensus       105 ~~L~~L~l~~n~~~~~~~~~~~~~~-~L~~l~l~~N~l~----~i~~~~f~~~~~L~~L~l~~N~l~~l~~~~f~~l~~L  179 (284)
T d1ozna_         105 GRLHTLHLDRCGLQELGPGLFRGLA-ALQYLYLQDNALQ----ALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSL  179 (284)
T ss_dssp             TTCCEEECTTSCCCCCCTTTTTTCT-TCCEEECCSSCCC----CCCTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTC
T ss_pred             ccCCEEecCCcccccccccccchhc-ccchhhhcccccc----ccChhHhccccchhhcccccCcccccchhhhcccccc
Confidence            567888877766542   2344556 8999999887653    456678999999999999999999775 677889999


Q ss_pred             cEEEccCCCcccc-chhHHhcCccccEeeccCCCCCcCCC
Q 037304          217 RYLHLNIPSLKSL-PSSLLNSLLNLYTLDKPFSYIDHTVD  255 (257)
Q Consensus       217 ~~L~l~~~~l~~l-P~~i~~~L~~L~~L~l~~~~l~~lP~  255 (257)
                      +++++++|.+..+ |..+ +.+++|++|++++|++..+|.
T Consensus       180 ~~l~l~~N~l~~i~~~~f-~~l~~L~~L~l~~N~i~~~~~  218 (284)
T d1ozna_         180 DRLLLHQNRVAHVHPHAF-RDLGRLMTLYLFANNLSALPT  218 (284)
T ss_dssp             CEEECCSSCCCEECTTTT-TTCTTCCEEECCSSCCSCCCH
T ss_pred             chhhhhhccccccChhHh-hhhhhcccccccccccccccc
Confidence            9999999998877 5666 999999999999999887764

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=98.51  E-value=1.7e-07  Score=78.73  Aligned_cols=98  Identities=12%  Similarity=0.097  Sum_probs=75.9

Q ss_pred             CcEEEEEEeCCCCc-cccccCCCCCccEEEeecCCCCCCCcccchHhhccCcccceEEEeCCCCccCchhcCCCCCCcEE
Q 037304          141 ENVKRFTAHGNLND-FAFLDHFDSFLHSLLHLTSGSHYLNPTYCEKICKMFKFLRVLDLGSLVLIRYPFEIENLFLLRYL  219 (257)
Q Consensus       141 ~~~r~L~~~~~~~~-~~~~~~~~~~Lrsl~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~l~~lp~~i~~L~~L~~L  219 (257)
                      ...+.+....+... ......+. .++.+.+.++...    ..  ..+..+++|+.|++++|.++.+| .++++++|++|
T Consensus       285 ~~l~~l~~~~n~l~~~~~~~~~~-~l~~L~ls~n~l~----~l--~~l~~l~~L~~L~L~~n~l~~l~-~l~~l~~L~~L  356 (384)
T d2omza2         285 TALTNLELNENQLEDISPISNLK-NLTYLTLYFNNIS----DI--SPVSSLTKLQRLFFANNKVSDVS-SLANLTNINWL  356 (384)
T ss_dssp             TTCSEEECCSSCCSCCGGGGGCT-TCSEEECCSSCCS----CC--GGGGGCTTCCEEECCSSCCCCCG-GGGGCTTCCEE
T ss_pred             cccccccccccccccccccchhc-ccCeEECCCCCCC----CC--cccccCCCCCEEECCCCCCCCCh-hHcCCCCCCEE
Confidence            44455555554433 24456677 8889988877653    22  23788999999999999998877 58899999999


Q ss_pred             EccCCCccccchhHHhcCccccEeeccCC
Q 037304          220 HLNIPSLKSLPSSLLNSLLNLYTLDKPFS  248 (257)
Q Consensus       220 ~l~~~~l~~lP~~i~~~L~~L~~L~l~~~  248 (257)
                      ++++|.++.+|+ + ++|++|++|++++|
T Consensus       357 ~l~~N~l~~l~~-l-~~l~~L~~L~L~~N  383 (384)
T d2omza2         357 SAGHNQISDLTP-L-ANLTRITQLGLNDQ  383 (384)
T ss_dssp             ECCSSCCCBCGG-G-TTCTTCSEEECCCE
T ss_pred             ECCCCcCCCChh-h-ccCCCCCEeeCCCC
Confidence            999999999886 6 89999999999886

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=98.49  E-value=3.2e-07  Score=70.67  Aligned_cols=104  Identities=16%  Similarity=0.109  Sum_probs=74.4

Q ss_pred             CcEEEEEEeCCCCcc-ccccCCCCCccEEEeecCCCCCCCcccchHhhccCcccceEEEeCCCCccCchhcCCCCCCcEE
Q 037304          141 ENVKRFTAHGNLNDF-AFLDHFDSFLHSLLHLTSGSHYLNPTYCEKICKMFKFLRVLDLGSLVLIRYPFEIENLFLLRYL  219 (257)
Q Consensus       141 ~~~r~L~~~~~~~~~-~~~~~~~~~Lrsl~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~l~~lp~~i~~L~~L~~L  219 (257)
                      .+++.|.+.++.... +...+++ +|+.|.+.++...    . . ..+.+++.|+.|+++++.....+ .+..+++|++|
T Consensus        62 ~nL~~L~Ls~N~l~~~~~l~~l~-~L~~L~l~~n~~~----~-~-~~l~~l~~L~~L~l~~~~~~~~~-~~~~l~~L~~L  133 (199)
T d2omxa2          62 NNLTQINFSNNQLTDITPLKNLT-KLVDILMNNNQIA----D-I-TPLANLTNLTGLTLFNNQITDID-PLKNLTNLNRL  133 (199)
T ss_dssp             TTCCEEECCSSCCCCCGGGTTCT-TCCEEECCSSCCC----C-C-GGGTTCTTCSEEECCSSCCCCCG-GGTTCTTCSEE
T ss_pred             CCcCcCccccccccCcccccCCc-ccccccccccccc----c-c-ccccccccccccccccccccccc-ccchhhhhHHh
Confidence            667777777765443 4456677 7888877766543    1 1 24677888888888887766543 47778888888


Q ss_pred             EccCCCccccchhHHhcCccccEeeccCCCCCcCC
Q 037304          220 HLNIPSLKSLPSSLLNSLLNLYTLDKPFSYIDHTV  254 (257)
Q Consensus       220 ~l~~~~l~~lP~~i~~~L~~L~~L~l~~~~l~~lP  254 (257)
                      ++++|.+..+| .+ ..+.+|+.|++.+|++..+|
T Consensus       134 ~l~~n~l~~~~-~l-~~~~~L~~L~l~~n~l~~l~  166 (199)
T d2omxa2         134 ELSSNTISDIS-AL-SGLTSLQQLNFSSNQVTDLK  166 (199)
T ss_dssp             ECCSSCCCCCG-GG-TTCTTCSEEECCSSCCCCCG
T ss_pred             hhhhhhhcccc-cc-cccccccccccccccccCCc
Confidence            88888887766 46 78888888888888776665

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=98.33  E-value=2.3e-09  Score=83.33  Aligned_cols=102  Identities=18%  Similarity=0.072  Sum_probs=56.6

Q ss_pred             CcEEEEEEeCCCCc-cccccCCCCCccEEEeecCCCCCCCcccchHhhccCcccceEEEeCCCCccCchhcCCCCCCcEE
Q 037304          141 ENVKRFTAHGNLND-FAFLDHFDSFLHSLLHLTSGSHYLNPTYCEKICKMFKFLRVLDLGSLVLIRYPFEIENLFLLRYL  219 (257)
Q Consensus       141 ~~~r~L~~~~~~~~-~~~~~~~~~~Lrsl~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~l~~lp~~i~~L~~L~~L  219 (257)
                      ..+++|.+..+... ++....+. +|+.|.+.++....     ++..+..++.|+.|++++|.++.++ .+..+++|++|
T Consensus        48 ~~L~~L~Ls~n~I~~i~~l~~l~-~L~~L~Ls~N~i~~-----i~~~~~~~~~L~~L~l~~N~i~~l~-~~~~l~~L~~L  120 (198)
T d1m9la_          48 KACKHLALSTNNIEKISSLSGME-NLRILSLGRNLIKK-----IENLDAVADTLEELWISYNQIASLS-GIEKLVNLRVL  120 (198)
T ss_dssp             TTCCEEECSEEEESCCCCHHHHT-TCCEEECCEEEECS-----CSSHHHHHHHCCEEECSEEECCCHH-HHHHHHHSSEE
T ss_pred             cccceeECcccCCCCcccccCCc-cccChhhccccccc-----ccccccccccccccccccccccccc-ccccccccccc
Confidence            34455555444322 23344556 67777766654421     2233344455666666666666553 35566666666


Q ss_pred             EccCCCccccch--hHHhcCccccEeeccCCCC
Q 037304          220 HLNIPSLKSLPS--SLLNSLLNLYTLDKPFSYI  250 (257)
Q Consensus       220 ~l~~~~l~~lP~--~i~~~L~~L~~L~l~~~~l  250 (257)
                      ++++|.++.++.  .+ ..+++|++|++++|.+
T Consensus       121 ~L~~N~i~~~~~~~~l-~~l~~L~~L~L~~N~l  152 (198)
T d1m9la_         121 YMSNNKITNWGEIDKL-AALDKLEDLLLAGNPL  152 (198)
T ss_dssp             EESEEECCCHHHHHHH-TTTTTCSEEEECSSHH
T ss_pred             ccccchhccccccccc-cCCCccceeecCCCcc
Confidence            666666665553  44 6666666666666643

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=98.29  E-value=3.4e-08  Score=76.48  Aligned_cols=89  Identities=19%  Similarity=0.115  Sum_probs=71.5

Q ss_pred             cccCCCCCccEEEeecCCCCCCCcccchHhhccCcccceEEEeCCCCccCchhcCCCCCCcEEEccCCCccccchhHHhc
Q 037304          157 FLDHFDSFLHSLLHLTSGSHYLNPTYCEKICKMFKFLRVLDLGSLVLIRYPFEIENLFLLRYLHLNIPSLKSLPSSLLNS  236 (257)
Q Consensus       157 ~~~~~~~~Lrsl~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~l~~lp~~i~~L~~L~~L~l~~~~l~~lP~~i~~~  236 (257)
                      ....+. +|+.|.+.++...    .+  +.+..+++|+.|++++|.++.+|.....+++|++|++++|.++.++ .+ ..
T Consensus        43 sl~~L~-~L~~L~Ls~n~I~----~i--~~l~~l~~L~~L~Ls~N~i~~i~~~~~~~~~L~~L~l~~N~i~~l~-~~-~~  113 (198)
T d1m9la_          43 TLSTLK-ACKHLALSTNNIE----KI--SSLSGMENLRILSLGRNLIKKIENLDAVADTLEELWISYNQIASLS-GI-EK  113 (198)
T ss_dssp             HHHHTT-TCCEEECSEEEES----CC--CCHHHHTTCCEEECCEEEECSCSSHHHHHHHCCEEECSEEECCCHH-HH-HH
T ss_pred             HHhccc-ccceeECcccCCC----Cc--ccccCCccccChhhcccccccccccccccccccccccccccccccc-cc-cc
Confidence            345677 8999998877653    12  2478899999999999999888876666778999999999998885 46 88


Q ss_pred             CccccEeeccCCCCCcCC
Q 037304          237 LLNLYTLDKPFSYIDHTV  254 (257)
Q Consensus       237 L~~L~~L~l~~~~l~~lP  254 (257)
                      +++|++|++++|++..+|
T Consensus       114 l~~L~~L~L~~N~i~~~~  131 (198)
T d1m9la_         114 LVNLRVLYMSNNKITNWG  131 (198)
T ss_dssp             HHHSSEEEESEEECCCHH
T ss_pred             cccccccccccchhcccc
Confidence            999999999998876553

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.18  E-value=2.5e-06  Score=67.14  Aligned_cols=71  Identities=15%  Similarity=-0.012  Sum_probs=38.8

Q ss_pred             HhhccCc-ccceEEEeCCCCccCchhcCCCCCCcEEE-ccCCCccccchhHHhcCccccEeeccCCCCCcCCC
Q 037304          185 KICKMFK-FLRVLDLGSLVLIRYPFEIENLFLLRYLH-LNIPSLKSLPSSLLNSLLNLYTLDKPFSYIDHTVD  255 (257)
Q Consensus       185 ~~~~~l~-~Lr~L~L~~~~l~~lp~~i~~L~~L~~L~-l~~~~l~~lP~~i~~~L~~L~~L~l~~~~l~~lP~  255 (257)
                      ..|.+++ .+..|+++++.+..++.......+++.+. +.++.++++|...|.++++|++|++++|+++.+|.
T Consensus       146 ~~~~~~~~~l~~L~l~~n~l~~i~~~~~~~~~l~~~~~l~~n~l~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~  218 (242)
T d1xwdc1         146 NSFVGLSFESVILWLNKNGIQEIHNCAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPS  218 (242)
T ss_dssp             TSSTTSBSSCEEEECCSSCCCEECTTTTTTCCEEEEECTTCTTCCCCCTTTTTTSCCCSEEECTTSCCCCCCS
T ss_pred             cccccccccceeeecccccccccccccccchhhhccccccccccccccHHHhcCCCCCCEEECCCCcCCccCH
Confidence            3344333 45556666666665555554444544443 34455666665544566666666666666666554

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.09  E-value=7.3e-06  Score=64.36  Aligned_cols=87  Identities=15%  Similarity=0.052  Sum_probs=49.8

Q ss_pred             CccEEEeecCCCCCCCcccchHhhccCcccceEEEeCCCCcc-C-chhcCCCCCCcEEEccC-CCccccchhHHhcCccc
Q 037304          164 FLHSLLHLTSGSHYLNPTYCEKICKMFKFLRVLDLGSLVLIR-Y-PFEIENLFLLRYLHLNI-PSLKSLPSSLLNSLLNL  240 (257)
Q Consensus       164 ~Lrsl~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~l~~-l-p~~i~~L~~L~~L~l~~-~~l~~lP~~i~~~L~~L  240 (257)
                      ++++|.+.++...    .+.+..|.++++|++|++++|.+.. + +..+..+++++++.+.. +.+..++...|.++++|
T Consensus        30 ~l~~L~Ls~n~i~----~l~~~~f~~l~~L~~L~ls~n~~~~~i~~~~f~~l~~l~~l~~~~~n~l~~~~~~~~~~l~~L  105 (242)
T d1xwdc1          30 NAIELRFVLTKLR----VIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNL  105 (242)
T ss_dssp             CCSEEEEESCCCC----EECTTTTTTCTTCCEEEEESCTTCCEECSSSEESCTTCCEEEEECCTTCCEECTTSEECCTTC
T ss_pred             CCCEEECcCCcCC----ccChhHhhccchhhhhhhccccccceeeccccccccccccccccccccccccccccccccccc
Confidence            5666666665542    3344456666667777776666543 2 23455666666666554 34554544433666666


Q ss_pred             cEeeccCCCCCcCC
Q 037304          241 YTLDKPFSYIDHTV  254 (257)
Q Consensus       241 ~~L~l~~~~l~~lP  254 (257)
                      ++|++++|.+...|
T Consensus       106 ~~l~l~~~~l~~~~  119 (242)
T d1xwdc1         106 QYLLISNTGIKHLP  119 (242)
T ss_dssp             CEEEEESCCCCSCC
T ss_pred             cccccchhhhcccc
Confidence            66666666655443

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=98.07  E-value=1.5e-06  Score=71.78  Aligned_cols=61  Identities=21%  Similarity=0.175  Sum_probs=52.4

Q ss_pred             ccCcccceEEEeCCCCccCchhcCCCCCCcEEEccCCCccccchhHHhcCccccEeeccCCCCCcCCC
Q 037304          188 KMFKFLRVLDLGSLVLIRYPFEIENLFLLRYLHLNIPSLKSLPSSLLNSLLNLYTLDKPFSYIDHTVD  255 (257)
Q Consensus       188 ~~l~~Lr~L~L~~~~l~~lp~~i~~L~~L~~L~l~~~~l~~lP~~i~~~L~~L~~L~l~~~~l~~lP~  255 (257)
                      ..+++|+.|++++|.+..+|..   +++|+.|++++|.++.+|+..    .+|++|++++|+++++|+
T Consensus       281 ~~~~~L~~L~Ls~N~l~~lp~~---~~~L~~L~L~~N~L~~l~~~~----~~L~~L~L~~N~L~~lp~  341 (353)
T d1jl5a_         281 DLPPSLEELNVSNNKLIELPAL---PPRLERLIASFNHLAEVPELP----QNLKQLHVEYNPLREFPD  341 (353)
T ss_dssp             CCCTTCCEEECCSSCCSCCCCC---CTTCCEEECCSSCCSCCCCCC----TTCCEEECCSSCCSSCCC
T ss_pred             ccCCCCCEEECCCCccCccccc---cCCCCEEECCCCcCCcccccc----CCCCEEECcCCcCCCCCc
Confidence            3467899999999999999864   568999999999999998753    589999999999888875

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=97.98  E-value=6.4e-06  Score=67.73  Aligned_cols=98  Identities=17%  Similarity=0.074  Sum_probs=71.6

Q ss_pred             cEEEEEEeCCCCc-cccccCCCCCccEEEeecCCCCCCCcccchHhhccCcccceEEEeCCCCccCchhcCCCCCCcEEE
Q 037304          142 NVKRFTAHGNLND-FAFLDHFDSFLHSLLHLTSGSHYLNPTYCEKICKMFKFLRVLDLGSLVLIRYPFEIENLFLLRYLH  220 (257)
Q Consensus       142 ~~r~L~~~~~~~~-~~~~~~~~~~Lrsl~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~l~~lp~~i~~L~~L~~L~  220 (257)
                      +.++|.+...... +|+  ..+ +|++|.+.++....     +|.   .+.+|+.|++++|.+..++.-   .+.|++|+
T Consensus        39 ~l~~LdLs~~~L~~lp~--~~~-~L~~L~Ls~N~l~~-----lp~---~~~~L~~L~l~~n~l~~l~~l---p~~L~~L~  104 (353)
T d1jl5a_          39 QAHELELNNLGLSSLPE--LPP-HLESLVASCNSLTE-----LPE---LPQSLKSLLVDNNNLKALSDL---PPLLEYLG  104 (353)
T ss_dssp             TCSEEECTTSCCSCCCS--CCT-TCSEEECCSSCCSS-----CCC---CCTTCCEEECCSSCCSCCCSC---CTTCCEEE
T ss_pred             CCCEEEeCCCCCCCCCC--CCC-CCCEEECCCCCCcc-----ccc---chhhhhhhhhhhcccchhhhh---cccccccc
Confidence            3456666555433 232  246 89999998876541     222   356899999999998876642   24699999


Q ss_pred             ccCCCccccchhHHhcCccccEeeccCCCCCcCCC
Q 037304          221 LNIPSLKSLPSSLLNSLLNLYTLDKPFSYIDHTVD  255 (257)
Q Consensus       221 l~~~~l~~lP~~i~~~L~~L~~L~l~~~~l~~lP~  255 (257)
                      +++|.+..+|. + +++.+|++|++++|.+...|.
T Consensus       105 L~~n~l~~lp~-~-~~l~~L~~L~l~~~~~~~~~~  137 (353)
T d1jl5a_         105 VSNNQLEKLPE-L-QNSSFLKIIDVDNNSLKKLPD  137 (353)
T ss_dssp             CCSSCCSSCCC-C-TTCTTCCEEECCSSCCSCCCC
T ss_pred             ccccccccccc-h-hhhccceeecccccccccccc
Confidence            99999999996 5 799999999999998776654

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.92  E-value=1.6e-06  Score=64.53  Aligned_cols=68  Identities=22%  Similarity=0.018  Sum_probs=45.0

Q ss_pred             hHhhccCcccceEEEeCCCCccC---chhcCCCCCCcEEEccCCCccccchhHHhcCccccEeeccCCCCC
Q 037304          184 EKICKMFKFLRVLDLGSLVLIRY---PFEIENLFLLRYLHLNIPSLKSLPSSLLNSLLNLYTLDKPFSYID  251 (257)
Q Consensus       184 ~~~~~~l~~Lr~L~L~~~~l~~l---p~~i~~L~~L~~L~l~~~~l~~lP~~i~~~L~~L~~L~l~~~~l~  251 (257)
                      +..+..++.|++|+|++|.++.+   +..+..+++|++|++++|.++.+++--+.+..+|+.|++++|.+.
T Consensus        58 ~~~~~~~~~L~~L~Ls~N~i~~l~~~~~~~~~l~~L~~L~Ls~N~i~~l~~l~~l~~~~L~~L~L~~Npl~  128 (162)
T d1koha1          58 RIIEENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLKLEELWLDGNSLS  128 (162)
T ss_dssp             HHHHHHCTTCCCCCCCSSCCCCCSGGGTHHHHSTTCCCCCCTTSCCCCGGGHHHHTTCCCSSCCCTTSTTS
T ss_pred             HHHHHhCCCCCEeeCCCccccCCchhHHHHhhCCcccccccccCccccchhhhhhhccccceeecCCCCcC
Confidence            34456677788888888777654   344566777888888887777776522133456777777777654

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.67  E-value=1.5e-05  Score=64.55  Aligned_cols=102  Identities=11%  Similarity=-0.008  Sum_probs=51.2

Q ss_pred             CcEEEEEEeCCCCcc----ccccCCCCCccEEEeecCCCCCCCcccchHhhccCcccceEEEeCCC-Cc--cCchhcCCC
Q 037304          141 ENVKRFTAHGNLNDF----AFLDHFDSFLHSLLHLTSGSHYLNPTYCEKICKMFKFLRVLDLGSLV-LI--RYPFEIENL  213 (257)
Q Consensus       141 ~~~r~L~~~~~~~~~----~~~~~~~~~Lrsl~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~-l~--~lp~~i~~L  213 (257)
                      .+++++.+.......    .-...++ +|+.|.+.++...    ......+.++++|+.|++++|. ++  .+..-...+
T Consensus        46 ~~L~~LdLs~~~i~~~~l~~l~~~c~-~L~~L~L~~~~l~----~~~~~~l~~~~~L~~L~Ls~c~~itd~~l~~l~~~~  120 (284)
T d2astb2          46 FRVQHMDLSNSVIEVSTLHGILSQCS-KLQNLSLEGLRLS----DPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSC  120 (284)
T ss_dssp             BCCCEEECTTCEECHHHHHHHHTTBC-CCSEEECTTCBCC----HHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHC
T ss_pred             CCCCEEECCCCccCHHHHHHHHHhCC-CcccccccccCCC----cHHHHHHhcCCCCcCccccccccccccccchhhHHH
Confidence            345555554433221    1123455 6666666655431    2233445566667777776653 44  122223445


Q ss_pred             CCCcEEEccCCC-cc--ccchhHHhcC-ccccEeeccCC
Q 037304          214 FLLRYLHLNIPS-LK--SLPSSLLNSL-LNLYTLDKPFS  248 (257)
Q Consensus       214 ~~L~~L~l~~~~-l~--~lP~~i~~~L-~~L~~L~l~~~  248 (257)
                      ++|++|++++|. +.  .++..+ ... ++|+.|++++|
T Consensus       121 ~~L~~L~ls~c~~~~~~~~~~~~-~~~~~~L~~L~l~~~  158 (284)
T d2astb2         121 SRLDELNLSWCFDFTEKHVQVAV-AHVSETITQLNLSGY  158 (284)
T ss_dssp             TTCCEEECCCCTTCCHHHHHHHH-HHSCTTCCEEECCSC
T ss_pred             Hhccccccccccccccccchhhh-cccccccchhhhccc
Confidence            667777776653 32  233333 333 46666666654

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.66  E-value=3.6e-05  Score=62.11  Aligned_cols=105  Identities=16%  Similarity=-0.000  Sum_probs=69.1

Q ss_pred             CcEEEEEEeCCC-Ccc-----ccccCCCCCccEEEeecCCCCCCCcccchHhhccCcccceEEEeCCC-Cc-cCchhcCC
Q 037304          141 ENVKRFTAHGNL-NDF-----AFLDHFDSFLHSLLHLTSGSHYLNPTYCEKICKMFKFLRVLDLGSLV-LI-RYPFEIEN  212 (257)
Q Consensus       141 ~~~r~L~~~~~~-~~~-----~~~~~~~~~Lrsl~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~-l~-~lp~~i~~  212 (257)
                      ...++|.+.+.. ...     ......+ .++.|.+.+....- ..........++++|+.|++++|. ++ ..+..+++
T Consensus       121 ~~L~~L~ls~c~~~~~~~~~~~~~~~~~-~L~~L~l~~~~~~i-~~~~l~~l~~~~~~L~~L~L~~~~~itd~~~~~l~~  198 (284)
T d2astb2         121 SRLDELNLSWCFDFTEKHVQVAVAHVSE-TITQLNLSGYRKNL-QKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQ  198 (284)
T ss_dssp             TTCCEEECCCCTTCCHHHHHHHHHHSCT-TCCEEECCSCGGGS-CHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGG
T ss_pred             Hhccccccccccccccccchhhhccccc-ccchhhhccccccc-ccccccccccccccccccccccccCCCchhhhhhcc
Confidence            456666665532 111     1112235 78888776643210 122344556778899999999876 65 45677888


Q ss_pred             CCCCcEEEccCCC-cc-ccchhHHhcCccccEeeccCC
Q 037304          213 LFLLRYLHLNIPS-LK-SLPSSLLNSLLNLYTLDKPFS  248 (257)
Q Consensus       213 L~~L~~L~l~~~~-l~-~lP~~i~~~L~~L~~L~l~~~  248 (257)
                      +++|++|++++|. ++ .-+..+ +++++|++|++++|
T Consensus       199 ~~~L~~L~L~~C~~i~~~~l~~L-~~~~~L~~L~l~~~  235 (284)
T d2astb2         199 LNYLQHLSLSRCYDIIPETLLEL-GEIPTLKTLQVFGI  235 (284)
T ss_dssp             CTTCCEEECTTCTTCCGGGGGGG-GGCTTCCEEECTTS
T ss_pred             cCcCCEEECCCCCCCChHHHHHH-hcCCCCCEEeeeCC
Confidence            9999999999864 54 344566 88899999999887

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.57  E-value=1.5e-05  Score=58.96  Aligned_cols=82  Identities=20%  Similarity=0.062  Sum_probs=62.0

Q ss_pred             CCCCCccEEEeecCCCCCCCcccchHhhccCcccceEEEeCCCCccCch-hcCCCCCCcEEEccCCCccccch-------
Q 037304          160 HFDSFLHSLLHLTSGSHYLNPTYCEKICKMFKFLRVLDLGSLVLIRYPF-EIENLFLLRYLHLNIPSLKSLPS-------  231 (257)
Q Consensus       160 ~~~~~Lrsl~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~l~~lp~-~i~~L~~L~~L~l~~~~l~~lP~-------  231 (257)
                      .++ .|++|.+.++...  .....+..+..+++|+.|++++|.++.+++ ......+|+.|++++|.+.....       
T Consensus        63 ~~~-~L~~L~Ls~N~i~--~l~~~~~~~~~l~~L~~L~Ls~N~i~~l~~l~~l~~~~L~~L~L~~Npl~~~~~~~~~y~~  139 (162)
T d1koha1          63 NIP-ELLSLNLSNNRLY--RLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLKLEELWLDGNSLSDTFRDQSTYIS  139 (162)
T ss_dssp             HCT-TCCCCCCCSSCCC--CCSGGGTHHHHSTTCCCCCCTTSCCCCGGGHHHHTTCCCSSCCCTTSTTSSSSSSHHHHHH
T ss_pred             hCC-CCCEeeCCCcccc--CCchhHHHHhhCCcccccccccCccccchhhhhhhccccceeecCCCCcCcCcccchhHHH
Confidence            467 8999999998875  222345667889999999999999998865 23344579999999998864432       


Q ss_pred             hHHhcCccccEee
Q 037304          232 SLLNSLLNLYTLD  244 (257)
Q Consensus       232 ~i~~~L~~L~~L~  244 (257)
                      .++..+++|++||
T Consensus       140 ~i~~~~P~L~~LD  152 (162)
T d1koha1         140 AIRERFPKLLRLD  152 (162)
T ss_dssp             HHHTTSTTCCEET
T ss_pred             HHHHHCCCCCEEC
Confidence            3337789999997

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.56  E-value=2.8e-05  Score=65.87  Aligned_cols=108  Identities=15%  Similarity=0.047  Sum_probs=75.7

Q ss_pred             cEEEEEEeCCCCcc----ccccCCCCCccEEEeecCCCCCCCcccchHhhccCcccceEEEeCCCCcc-----CchhcCC
Q 037304          142 NVKRFTAHGNLNDF----AFLDHFDSFLHSLLHLTSGSHYLNPTYCEKICKMFKFLRVLDLGSLVLIR-----YPFEIEN  212 (257)
Q Consensus       142 ~~r~L~~~~~~~~~----~~~~~~~~~Lrsl~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~l~~-----lp~~i~~  212 (257)
                      +++.|.+.++....    .-...++ ++++|.+.++.........+...+..+++|+.|+|++|.+..     +...+..
T Consensus         3 ~l~~ld~~~~~i~~~~~~~l~~~l~-~l~~L~L~~~~i~~~~~~~l~~~L~~~~~L~~LdLs~N~i~~~~~~~l~~~l~~   81 (460)
T d1z7xw1           3 DIQSLDIQCEELSDARWAELLPLLQ-QCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQT   81 (460)
T ss_dssp             EEEEEEEESCCCCHHHHHHHHHHHT-TCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCS
T ss_pred             CCCEEEeeCCcCChHHHHHHHHhCC-CCCEEEeCCCCCCHHHHHHHHHHHhcCCCCCEEECcCCcCChHHHHHHHHHHhc
Confidence            35667777766543    1234566 899999998875311112345667889999999999998752     2333332


Q ss_pred             -CCCCcEEEccCCCccc-----cchhHHhcCccccEeeccCCCCC
Q 037304          213 -LFLLRYLHLNIPSLKS-----LPSSLLNSLLNLYTLDKPFSYID  251 (257)
Q Consensus       213 -L~~L~~L~l~~~~l~~-----lP~~i~~~L~~L~~L~l~~~~l~  251 (257)
                       ..+|+.|++++|.++.     ++..+ ..+++|++|++++|.+.
T Consensus        82 ~~~~L~~L~L~~n~it~~~~~~l~~~l-~~~~~L~~L~L~~N~i~  125 (460)
T d1z7xw1          82 PSCKIQKLSLQNCCLTGAGCGVLSSTL-RTLPTLQELHLSDNLLG  125 (460)
T ss_dssp             TTCCCCEEECTTSCCBGGGHHHHHHHT-TSCTTCCEEECCSSBCH
T ss_pred             CCCCCCEEECCCCCccccccccccchh-hccccccccccccccch
Confidence             3479999999998863     56677 88999999999998754

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.37  E-value=5.4e-05  Score=64.10  Aligned_cols=84  Identities=13%  Similarity=0.046  Sum_probs=64.2

Q ss_pred             CccEEEeecCCCCCCCcccchHhhccCcccceEEEeCCCCc-----cCchhcCCCCCCcEEEccCCCccc-----cchhH
Q 037304          164 FLHSLLHLTSGSHYLNPTYCEKICKMFKFLRVLDLGSLVLI-----RYPFEIENLFLLRYLHLNIPSLKS-----LPSSL  233 (257)
Q Consensus       164 ~Lrsl~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~l~-----~lp~~i~~L~~L~~L~l~~~~l~~-----lP~~i  233 (257)
                      +|++|.+.++...   .......+..++++++|+|++|.++     .++..+..+++|++|+|++|.+..     +...+
T Consensus         3 ~l~~ld~~~~~i~---~~~~~~l~~~l~~l~~L~L~~~~i~~~~~~~l~~~L~~~~~L~~LdLs~N~i~~~~~~~l~~~l   79 (460)
T d1z7xw1           3 DIQSLDIQCEELS---DARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGL   79 (460)
T ss_dssp             EEEEEEEESCCCC---HHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTT
T ss_pred             CCCEEEeeCCcCC---hHHHHHHHHhCCCCCEEEeCCCCCCHHHHHHHHHHHhcCCCCCEEECcCCcCChHHHHHHHHHH
Confidence            6788889887763   2334567788999999999999987     445667889999999999998853     33333


Q ss_pred             Hh-cCccccEeeccCCCCC
Q 037304          234 LN-SLLNLYTLDKPFSYID  251 (257)
Q Consensus       234 ~~-~L~~L~~L~l~~~~l~  251 (257)
                       . ...+|++|++++|.+.
T Consensus        80 -~~~~~~L~~L~L~~n~it   97 (460)
T d1z7xw1          80 -QTPSCKIQKLSLQNCCLT   97 (460)
T ss_dssp             -CSTTCCCCEEECTTSCCB
T ss_pred             -hcCCCCCCEEECCCCCcc
Confidence             2 2347999999999875

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=97.03  E-value=0.00033  Score=57.56  Aligned_cols=91  Identities=21%  Similarity=0.212  Sum_probs=60.8

Q ss_pred             cCCCCCccEEEeecCCCCCC-CcccchHhhccCcccceEEEeCCCCc-----cCchhcCCCCCCcEEEccCCCccc----
Q 037304          159 DHFDSFLHSLLHLTSGSHYL-NPTYCEKICKMFKFLRVLDLGSLVLI-----RYPFEIENLFLLRYLHLNIPSLKS----  228 (257)
Q Consensus       159 ~~~~~~Lrsl~l~~~~~~~~-~~~~~~~~~~~l~~Lr~L~L~~~~l~-----~lp~~i~~L~~L~~L~l~~~~l~~----  228 (257)
                      .... .+++|.+..+..... ........+..+++|+.|++++|.+.     .+...+...++|++|++++|.+..    
T Consensus       183 ~~~~-~L~~L~L~~n~i~~~g~~~~l~~~l~~~~~L~~L~Ls~N~i~~~g~~~L~~~l~~~~~L~~L~Ls~n~i~~~g~~  261 (344)
T d2ca6a1         183 QSHR-LLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAA  261 (344)
T ss_dssp             HHCT-TCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHH
T ss_pred             hhhh-hhcccccccccccccccccchhhhhcchhhhcccccccccccccccccccccccccccchhhhhhcCccCchhhH
Confidence            3456 788888877655310 01123445677888999999988865     345667778889999999888753    


Q ss_pred             -cchhHHhcC--ccccEeeccCCCCC
Q 037304          229 -LPSSLLNSL--LNLYTLDKPFSYID  251 (257)
Q Consensus       229 -lP~~i~~~L--~~L~~L~l~~~~l~  251 (257)
                       +-..+ ...  ..|++|++++|.+.
T Consensus       262 ~l~~~l-~~~~~~~L~~L~ls~N~i~  286 (344)
T d2ca6a1         262 AVVDAF-SKLENIGLQTLRLQYNEIE  286 (344)
T ss_dssp             HHHHHH-HTCSSCCCCEEECCSSCCB
T ss_pred             HHHHHh-hhccCCCCCEEECCCCcCC
Confidence             33334 433  56889999988764

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=96.95  E-value=0.00024  Score=58.46  Aligned_cols=111  Identities=15%  Similarity=0.021  Sum_probs=77.2

Q ss_pred             CcEEEEEEeCCCCcc--------ccccCCCCCccEEEeecCCCCCCCcccchHhhccCcccceEEEeCCCCcc-----Cc
Q 037304          141 ENVKRFTAHGNLNDF--------AFLDHFDSFLHSLLHLTSGSHYLNPTYCEKICKMFKFLRVLDLGSLVLIR-----YP  207 (257)
Q Consensus       141 ~~~r~L~~~~~~~~~--------~~~~~~~~~Lrsl~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~l~~-----lp  207 (257)
                      ..++.+.+..+....        ......+ +|+.|.+.++.........+...+..+++|+.|+|++|.+..     +-
T Consensus       186 ~~L~~L~L~~n~i~~~g~~~~l~~~l~~~~-~L~~L~Ls~N~i~~~g~~~L~~~l~~~~~L~~L~Ls~n~i~~~g~~~l~  264 (344)
T d2ca6a1         186 RLLHTVKMVQNGIRPEGIEHLLLEGLAYCQ-ELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVV  264 (344)
T ss_dssp             TTCCEEECCSSCCCHHHHHHHHHTTGGGCT-TCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHHHH
T ss_pred             hhhcccccccccccccccccchhhhhcchh-hhcccccccccccccccccccccccccccchhhhhhcCccCchhhHHHH
Confidence            456777777665432        2234567 899999987765310112244667889999999999999873     33


Q ss_pred             hhcCC--CCCCcEEEccCCCcc-----ccchhHHhcCccccEeeccCCCCCc
Q 037304          208 FEIEN--LFLLRYLHLNIPSLK-----SLPSSLLNSLLNLYTLDKPFSYIDH  252 (257)
Q Consensus       208 ~~i~~--L~~L~~L~l~~~~l~-----~lP~~i~~~L~~L~~L~l~~~~l~~  252 (257)
                      +.+..  .+.|+.|++++|.+.     .+...+..++++|++|++++|.+.+
T Consensus       265 ~~l~~~~~~~L~~L~ls~N~i~~~~~~~l~~~l~~~~~~L~~L~l~~N~~~~  316 (344)
T d2ca6a1         265 DAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSE  316 (344)
T ss_dssp             HHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCT
T ss_pred             HHhhhccCCCCCEEECCCCcCChHHHHHHHHHHHccCCCCCEEECCCCcCCC
Confidence            33433  357999999999885     4667762368899999999998754

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=96.70  E-value=0.00053  Score=50.54  Aligned_cols=106  Identities=9%  Similarity=-0.015  Sum_probs=64.7

Q ss_pred             CcEEEEEEeCC-CCcc-------ccccCCCCCccEEEeecCCCCCCCcccchHhhccCcccceEEEeCCCCc-----cCc
Q 037304          141 ENVKRFTAHGN-LNDF-------AFLDHFDSFLHSLLHLTSGSHYLNPTYCEKICKMFKFLRVLDLGSLVLI-----RYP  207 (257)
Q Consensus       141 ~~~r~L~~~~~-~~~~-------~~~~~~~~~Lrsl~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~l~-----~lp  207 (257)
                      ..++.|.+.+. ....       ....... .|++|.+.++.........+...+...+.|+.|+|++|.+.     .+-
T Consensus        15 ~~L~~L~L~~~~~i~~~~~~~l~~~L~~n~-~L~~L~Ls~n~l~~~~~~~la~~L~~n~~L~~L~L~~n~i~~~g~~~l~   93 (167)
T d1pgva_          15 TDLKEVNINNMKRVSKERIRSLIEAACNSK-HIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARLL   93 (167)
T ss_dssp             SSCCEEECTTCCSSCHHHHHHHHHHHTTCS-CCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHHH
T ss_pred             CCCcEEEeCCCCCCCHHHHHHHHHHHhhCC-ccceeeccccccchhHHHHHhhhhhhcccccceeeehhhcchHHHHHHH
Confidence            34566666542 2221       2234455 78888887765532111234456667778888888888766     234


Q ss_pred             hhcCCCCCCcEEEccCCCccc--------cchhHHhcCccccEeeccCC
Q 037304          208 FEIENLFLLRYLHLNIPSLKS--------LPSSLLNSLLNLYTLDKPFS  248 (257)
Q Consensus       208 ~~i~~L~~L~~L~l~~~~l~~--------lP~~i~~~L~~L~~L~l~~~  248 (257)
                      ..+..-+.|++|+++++.+..        +...+ ..-++|+.|+++.+
T Consensus        94 ~aL~~n~sL~~L~l~~n~~~~~g~~~~~~l~~~L-~~n~sL~~l~l~~~  141 (167)
T d1pgva_          94 RSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAI-EENESLLRVGISFA  141 (167)
T ss_dssp             HHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHH-HHCSSCCEEECCCC
T ss_pred             HHHHhCCcCCEEECCCCcCCCccHHHHHHHHHHH-HhCCCccEeeCcCC
Confidence            456666778888887765432        44555 56677888887665

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=96.06  E-value=0.0025  Score=46.72  Aligned_cols=90  Identities=12%  Similarity=-0.097  Sum_probs=59.7

Q ss_pred             CCCCccEEEeecCC-CCCCCcccchHhhccCcccceEEEeCCCCc-----cCchhcCCCCCCcEEEccCCCcc-----cc
Q 037304          161 FDSFLHSLLHLTSG-SHYLNPTYCEKICKMFKFLRVLDLGSLVLI-----RYPFEIENLFLLRYLHLNIPSLK-----SL  229 (257)
Q Consensus       161 ~~~~Lrsl~l~~~~-~~~~~~~~~~~~~~~l~~Lr~L~L~~~~l~-----~lp~~i~~L~~L~~L~l~~~~l~-----~l  229 (257)
                      .+ .|+.|.+.+.. ........+...+...+.|+.|+|++|.+.     .+.+.+...+.|+.|++++|.+.     .+
T Consensus        14 ~~-~L~~L~L~~~~~i~~~~~~~l~~~L~~n~~L~~L~Ls~n~l~~~~~~~la~~L~~n~~L~~L~L~~n~i~~~g~~~l   92 (167)
T d1pgva_          14 DT-DLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARL   92 (167)
T ss_dssp             CS-SCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHH
T ss_pred             CC-CCcEEEeCCCCCCCHHHHHHHHHHHhhCCccceeeccccccchhHHHHHhhhhhhcccccceeeehhhcchHHHHHH
Confidence            45 88888887532 210001123345667788999999998876     23345556678999999998775     24


Q ss_pred             chhHHhcCccccEeeccCCCCCc
Q 037304          230 PSSLLNSLLNLYTLDKPFSYIDH  252 (257)
Q Consensus       230 P~~i~~~L~~L~~L~l~~~~l~~  252 (257)
                      -..+ ..-++|+.|++++|....
T Consensus        93 ~~aL-~~n~sL~~L~l~~n~~~~  114 (167)
T d1pgva_          93 LRST-LVTQSIVEFKADNQRQSV  114 (167)
T ss_dssp             HHHT-TTTCCCSEEECCCCSSCC
T ss_pred             HHHH-HhCCcCCEEECCCCcCCC
Confidence            4455 666789999998876443

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=94.41  E-value=0.013  Score=42.40  Aligned_cols=107  Identities=11%  Similarity=0.078  Sum_probs=69.0

Q ss_pred             CcEEEEEEeC-CCCcc-------ccccCCCCCccEEEeecCCCCCCCcccchHhhccCcccceEEEeCCCCc-----cCc
Q 037304          141 ENVKRFTAHG-NLNDF-------AFLDHFDSFLHSLLHLTSGSHYLNPTYCEKICKMFKFLRVLDLGSLVLI-----RYP  207 (257)
Q Consensus       141 ~~~r~L~~~~-~~~~~-------~~~~~~~~~Lrsl~l~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~l~-----~lp  207 (257)
                      +.+++|.+.+ +....       ......+ +|+.|.+.++.........+...+...+.++.++++++.+.     .+-
T Consensus        17 ~~L~~L~L~~~~~i~~~~~~~l~~al~~n~-~L~~L~Ls~n~l~~~~~~~L~~~l~~~~~l~~l~l~~~~~~~~g~~~l~   95 (166)
T d1io0a_          17 PDLEEVNLNNIMNIPVPTLKACAEALKTNT-YVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILALV   95 (166)
T ss_dssp             TTCCEEECTTCTTCCHHHHHHHHHHHTTCC-SCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHHHH
T ss_pred             CCCcEEEcCCCCCCCHHHHHHHHHHHhcCC-ccCeeeccCCcccHHHHHHHHHHHhhcccchhhhhccccccchhHHHHH
Confidence            4556666654 22221       2334567 88888888876542112234456677888999999888865     344


Q ss_pred             hhcCCCCCCcEEEcc--CCCcc-----ccchhHHhcCccccEeeccCCC
Q 037304          208 FEIENLFLLRYLHLN--IPSLK-----SLPSSLLNSLLNLYTLDKPFSY  249 (257)
Q Consensus       208 ~~i~~L~~L~~L~l~--~~~l~-----~lP~~i~~~L~~L~~L~l~~~~  249 (257)
                      ..+...+.|+.+.|.  ++.+.     .|...+ .+.++|+.|++..+.
T Consensus        96 ~~l~~~~~L~~l~L~l~~n~i~~~~~~~La~~L-~~n~~L~~L~l~~~~  143 (166)
T d1io0a_          96 EALQSNTSLIELRIDNQSQPLGNNVEMEIANML-EKNTTLLKFGYHFTQ  143 (166)
T ss_dssp             HGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHH-HHCSSCCEEECCCSS
T ss_pred             HHHHhCccccEEeeccCCCcCcHHHHHHHHHHH-HhCCCcCEEeCcCCC
Confidence            666777888876664  44553     466667 788889999887664

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=94.23  E-value=0.023  Score=41.03  Aligned_cols=86  Identities=12%  Similarity=-0.019  Sum_probs=58.5

Q ss_pred             CCCCCccEEEeecCC-CCCCCcccchHhhccCcccceEEEeCCCCc-----cCchhcCCCCCCcEEEccCCCcc-----c
Q 037304          160 HFDSFLHSLLHLTSG-SHYLNPTYCEKICKMFKFLRVLDLGSLVLI-----RYPFEIENLFLLRYLHLNIPSLK-----S  228 (257)
Q Consensus       160 ~~~~~Lrsl~l~~~~-~~~~~~~~~~~~~~~l~~Lr~L~L~~~~l~-----~lp~~i~~L~~L~~L~l~~~~l~-----~  228 (257)
                      +.+ .|+.|.+.+.. ........+...+...++|+.|++++|.+.     .+-..+...++++.++++++.+.     .
T Consensus        15 ~~~-~L~~L~L~~~~~i~~~~~~~l~~al~~n~~L~~L~Ls~n~l~~~~~~~L~~~l~~~~~l~~l~l~~~~~~~~g~~~   93 (166)
T d1io0a_          15 NDP-DLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILA   93 (166)
T ss_dssp             TCT-TCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHH
T ss_pred             cCC-CCcEEEcCCCCCCCHHHHHHHHHHHhcCCccCeeeccCCcccHHHHHHHHHHHhhcccchhhhhccccccchhHHH
Confidence            445 88888887632 321011123455678889999999999876     23345566789999999998764     4


Q ss_pred             cchhHHhcCccccEeeccC
Q 037304          229 LPSSLLNSLLNLYTLDKPF  247 (257)
Q Consensus       229 lP~~i~~~L~~L~~L~l~~  247 (257)
                      +-..+ ...++|+.++|..
T Consensus        94 l~~~l-~~~~~L~~l~L~l  111 (166)
T d1io0a_          94 LVEAL-QSNTSLIELRIDN  111 (166)
T ss_dssp             HHHGG-GGCSSCCEEECCC
T ss_pred             HHHHH-HhCccccEEeecc
Confidence            55666 7788898766653