Citrus Sinensis ID: 037308

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-
Protein Sequence
GTKKIEGICLDMSTVKEIRLNLSTFTKMPKLRFLKFYSSSFNGENKCKVSYLQDPRFAEVKYFHWHGYPLKSLPSNLSAEKLVFLKVPYSDIEQLWNGEKHYSNLNQIINATCNKLIAKTPNPTLMPHLNKLVILNLRGSKSLKSLPSGIFNLEFLTKLDLSGCSKLKRLLEISSGNINWLFLRETAIEELPSSIERLLRLGHLDLSDCKRLKSLPSSLFKLKSLGVLNLGGCSNLQRLPECLGQLSSPIILNLAKTNVERIPESIIQLFVLRYLLLSYSERIQSVSLPLARGILEDTQRSPHMDHKLAVRWQEVQENVCL
Secondary Structure (PSIPRED)
ccccEEEEEEEcccccEEEEcHHHHcccccccEEEEcccccccccccccccccccccccccEEEEccccccccccccccccccEEEccccccEEccccccccccccEEEccccccccEEccccccccccccccccccccccccccccccccccccccEEEcccccccccccccccccccEEEccccccEEccccHHccccccEEEcccccccccccccccccccccEEEEccccccccccccccccccccEEEccccccccccccccccccccEEEccccccccccccccccccccccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
cccEEEEEEEEcccccHccccHHHHHccccccEEEEEcccccccccccccccccccHHHcEEEEccccccccccccccHHHHEEEEcccccHHHccccccccHcccEEEccccccccccccccccHHcHHHccEEEccccccHccccccHHcHHHccEEEcccccHHcccccccHHHHHEEEccccccEcccccHHHHHcccEEEccccccHHcccccHcccccccEEEcccccHHHcccHHHccHHHHcEEEcccccccccccHHHHHHcccEEEccccccccEccccccHHHHHHccccccccccccccHccccccccc
Coil and Loop (DISEMBL)
GTKKIEGICLDMSTVKEIRLNLstftkmpklrflkfysssfngenkckvsylqdprfaevkyfhwhgyplkslpsnlsaeklvflkvpysdieqlwngekhySNLNQIINATCNKLiaktpnptlmphLNKLVILNLrgskslkslpsgifnlEFLTKLDLSGCSKLKRLLEISSGNINWLFLRETAIEELPSSIERLLRLghldlsdckrlkslpsslfklkslgvlnlggcsnlqrlpeclgqlsspiILNLAKTNVERIPESIIQLFVLRYLLLSYSEriqsvslplargiledtqrsphmdHKLAVRWQEVQENVCL
Flexible Loop (DISEMBL)
gtkkiegicldmstvKEIRLnlstftkmpkLRFLKFYSSSFNGENKCKVSYLQDPRFAEVKYFHWHGYPLKSLPSNLSAEKLVFLKVPYSDIEQLWNGEKHYSNLNQIINATCNKLIAKTPNPTLMPHLNKLVILNLRGSKSLKSLPSGIFNLEFLTKLDLSGCSKLKRLLEISSGNINWLFLRETAIEELPSSIERLLRLGHLDLSDCKRLKSLPSSLFKLKSLGVLNLGGCSNLQRLPECLGQLSSPIILNLAKTNVERIPESIIQLFVLRYLLLSYSERIQSVSLPLARGILEDTQRSPHMDHKLAVRWQevqenvcl
Low Complexity Region (SEG)
GTKKIEGICLDMSTVKEIRLNLSTFTKMPKLRFLKFYSSSFNGENKCKVSYLQDPRFAEVKYFHWHGYPLKSLPSNLSAEKLVFLKVPYSDIEQLWNGEKHYSNLNQIINATCNKLIAKTPNPTLMPHLNKLVILNLRGSKSLKSLPSGIFNLEFLTKLDLSGCSKLKRLLEISSGNINWLFLRETAIEELPSSIERLLRLGHLDLSDCkrlkslpsslfklkslGVLNLGGCSNLQRLPECLGQLSSPIILNLAKTNVERIPESIIQLFVLRYLLLSYSERIQSVSLPLARGILEDTQRSPHMDHKLAVRWQEVQENVCL
Disordered region (IsUnstruct)
*****EGICLDMSTVKEIRLNLSTFTKMPKLRFLKFYSSSFNGENKCKVSYLQDPRFAEVKYFHWHGYPLKSLPSNLSAEKLVFLKVPYSDIEQLWNGEKHYSNLNQIINATCNKLIAKTPNPTLMPHLNKLVILNLRGSKSLKSLPSGIFNLEFLTKLDLSGCSKLKRLLEISSGNINWLFLRETAIEELPSSIERLLRLGHLDLSDCKRLKSLPSSLFKLKSLGVLNLGGCSNLQRLPECLGQLSSPIILNLAKTNVERIPESIIQLFVLRYLLLSYSERIQSVSLPLARGIL*************AVRW*********
Disordered Region (DISOPRED)
GTKKIEGICLDMSTVKEIRLNLSTFTKMPKLRFLKFYSSSFNGENKCKVS***DPRFAEVKYFHWHGYPLKSLPSNLSAEKLVFLKVPYSDIEQLWNGEKHYSNLNQIINATCNKLIAKTPNPTLMPHLNKLVILNLRGSKSLKSLPSGIFNLEFLTKLDLSGCSKLKRLLEISSGNINWLFLRETAIEELPSSIERLLRLGHLDLSDCKRLKSLPSSLFKLKSLGVLNLGGCSNLQRLPECLGQLSSPIILNLAKTNVERIPESIIQLFVLRYLLLSYSERIQSVSLPLARGILEDTQRSPHMDHKLAVRWQEVQENVCL
Disordered Region (DISEMBL)
GTKKIEGICLDMSTVKEIRLNLSTFTKMPKLRFLKFYSSSFNGENKCKVSYLQDPRFAEVKYFHWHGYPLKSLPSNLSAEKLVFLKVPYSDIEQLWNGEKHYSNLNQIINATCNKLIAKTPNPTLMPHLNKLVILNLRGSKSLKSLPSGIFNLEFLTKLDLSGCSKLKRLLEISSGNINWLFLRETAIEELPSSIERLLRLGHLDLSDCKRLKSLPSSLFKLKSLGVLNLGGCSNLQRLPECLGQLSSPIILNLAKTNVERIPESIIQLFVLRYLLLSYSERIQSVSLPLARGILEDTQRSPHMDHKLAVRWQEVQENVCL
Disordered Region (DISPRO)
*TKKIEGICLDMSTVKEIRLNLSTFTKMPKLRFLKFYSSSFNGENKCKVSYLQDPRFAEVKYFHWHGYPLKSLPSNLSAEKLVFLKVPYSDIEQLWNGEKHYSNLNQIINATCNKLIAKTPNPTLMPHLNKLVILNLRGSKSLKSLPSGIFNLEFLTKLDLSGCSKLKRLLEISSGNINWLFLRETAIEELPSSIERLLRLGHLDLSDCKRLKSLPSSLFKLKSLGVLNLGGCSNLQRLPECLGQLSSPIILNLAKTNVERIPESIIQLFVLRYLLLSYSERIQSVSLPLARGILEDTQRSPHMDHKLAVRWQEVQENVCL
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
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Transmembrane Helix (MEMSAT)
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TM Helix, Signal Peptide (MEMSAT_SVM)
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TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
GTKKIEGICLDMSTVKEIRLNLSTFTKMPKLRFLKFYSSSFNGENKCKVSYLQDPRFAEVKYFHWHGYPLKSLPSNLSAEKLVFLKVPYSDIEQLWNGEKHYSNLNQIINATCNKLIAKTPNPTLMPHLNKLVILNLRGSKSLKSLPSGIFNLEFLTKLDLSGCSKLKRLLEISSGNINWLFLRETAIEELPSSIERLLRLGHLDLSDCKRLKSLPSSLFKLKSLGVLNLGGCSNLQRLPECLGQLSSPIILNLAKTNVERIPESIIQLFVLRYLLLSYSERIQSVSLPLARGILEDTQRSPHMDHKLAVRWQEVQENVCL
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	321	2.2.26 [Sep-21-2011]
Q9SZ67	1895	Probable WRKY transcripti	no	no	0.862	0.146	0.371	1e-37
Q40392	1144	TMV resistance protein N	N/A	no	0.875	0.245	0.296	1e-19
O23530	1301	Protein SUPPRESSOR OF npr	no	no	0.638	0.157	0.356	4e-19
Q9FH83	1288	Probable WRKY transcripti	no	no	0.769	0.191	0.308	5e-19
O82500	1095	Putative disease resistan	no	no	0.772	0.226	0.3	3e-18
Q9FL92	1372	Probable WRKY transcripti	no	no	0.791	0.185	0.288	3e-16
Q9FKN7	1613	Protein DA1-related 4 OS=	no	no	0.819	0.163	0.264	3e-14
P0CB16	1201	Putative disease resistan	no	no	0.520	0.139	0.335	1e-11
Q7SXW3	601	Leucine-rich repeat-conta	yes	no	0.613	0.327	0.295	5e-10
Q9RBS2	1024	Protein PopC OS=Ralstonia	no	no	0.380	0.119	0.344	1e-07

>sp|Q9SZ67|WRK19_ARATH Probable WRKY transcription factor 19 OS=Arabidopsis thaliana GN=WRKY19 PE=2 SV=1

 Score =  157 bits (396), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 116/312 (37%), Positives = 173/312 (55%), Gaps = 35/312 (11%)

Query: 1    GTKKIEGICLDMSTVKEIRLNLSTFTKMPKLRFLKFYSSSFNGENKCKVSYLQDPRF--A 58
            GT  IEGI LDM  +K    N + F KM  LR LK Y S    E K  VS+ Q   +  +
Sbjct: 1149 GTSAIEGIFLDMLNLK-FDANPNVFEKMCNLRLLKLYCS--KAEEKHGVSFPQGLEYLPS 1205

Query: 59   EVKYFHWHGYPLKSLPSNLSAEKLVFLKVPYSDIEQLWNGEKHY-----SNLNQI--INA 111
            +++  HW  YPL SLP + + E LV L +P S  ++LW G+K       S+L ++  +  
Sbjct: 1206 KLRLLHWEYYPLSSLPKSFNPENLVELNLPSSCAKKLWKGKKARFCTTNSSLEKLKKMRL 1265

Query: 112  TCNKLIAKTP---NPTLMPHLN------------------KLVILNLRGSKSLKSLPSGI 150
            + +  + K P   + T + H++                  KLV LNL+G   L+++PS +
Sbjct: 1266 SYSDQLTKIPRLSSATNLEHIDLEGCNSLLSLSQSISYLKKLVFLNLKGCSKLENIPS-M 1324

Query: 151  FNLEFLTKLDLSGCSKLKRLLEISSGNINWLFLRETAIEELPSSIERLLRLGHLDLSDCK 210
             +LE L  L+LSGCSKL    EIS  N+  L++  T I+E+PSSI+ L+ L  LDL + +
Sbjct: 1325 VDLESLEVLNLSGCSKLGNFPEISP-NVKELYMGGTMIQEIPSSIKNLVLLEKLDLENSR 1383

Query: 211  RLKSLPSSLFKLKSLGVLNLGGCSNLQRLPECLGQLSSPIILNLAKTNVERIPESIIQLF 270
             LK+LP+S++KLK L  LNL GC +L+R P+   ++     L+L++T+++ +P SI  L 
Sbjct: 1384 HLKNLPTSIYKLKHLETLNLSGCISLERFPDSSRRMKCLRFLDLSRTDIKELPSSISYLT 1443

Query: 271  VLRYLLLSYSER 282
             L  LL   S R
Sbjct: 1444 ALDELLFVDSRR 1455

Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element. May act also as a disease resistance protein with a serine/threonine-protein kinase activity.
Arabidopsis thaliana (taxid: 3702)

>sp|Q40392|TMVRN_NICGU TMV resistance protein N OS=Nicotiana glutinosa GN=N PE=1 SV=1

 Score = 97.4 bits (241), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 95/320 (29%), Positives = 153/320 (47%), Gaps = 39/320 (12%)

Query: 1   GTKKIEGICLDMSTVKEIRLNLSTFTKMPKLRFLKFYSSSFNGENKCKVSYLQDPRFAEV 60
           GT  +E I +  S    +R +      M +LR      SS        + YL +     +
Sbjct: 526 GTMAMEAIWVS-SYSSTLRFSNQAVKNMKRLRVFNMGRSS----THYAIDYLPN----NL 576

Query: 61  KYFHWHGYPLKSLPSNLSAEKLVFLKVPYSDIEQLWNGEKHYSNLNQIINATCNKLIAKT 120
           + F    YP +S PS    + LV L++ ++ +  LW   KH  +L +I + + +K + +T
Sbjct: 577 RCFVCTNYPWESFPSTFELKMLVHLQLRHNSLRHLWTETKHLPSLRRI-DLSWSKRLTRT 635

Query: 121 PNPTLMPHL---------------------NKLVILNLRGSKSLKSLPSGIFNLEFLTKL 159
           P+ T MP+L                     +K++ L L   KSLK  P    N+E L  L
Sbjct: 636 PDFTGMPNLEYVNLYQCSNLEEVHHSLGCCSKVIGLYLNDCKSLKRFP--CVNVESLEYL 693

Query: 160 DLSGCSKLKRLLEISSGNIN---WLFLRETAIEELPSSI-ERLLRLGHLDLSDCKRLKSL 215
            L  C  L++L EI  G +     + ++ + I ELPSSI +    +  L L + K L +L
Sbjct: 694 GLRSCDSLEKLPEIY-GRMKPEIQIHMQGSGIRELPSSIFQYKTHVTKLLLWNMKNLVAL 752

Query: 216 PSSLFKLKSLGVLNLGGCSNLQRLPECLGQLSSPIILNLAKTNVERIPESIIQLFVLRYL 275
           PSS+ +LKSL  L++ GCS L+ LPE +G L +  + + + T + R P SII+L  L  L
Sbjct: 753 PSSICRLKSLVSLSVSGCSKLESLPEEIGDLDNLRVFDASDTLILRPPSSIIRLNKLIIL 812

Query: 276 LL-SYSERIQSVSLPLARGI 294
           +   + + +     P+A G+
Sbjct: 813 MFRGFKDGVHFEFPPVAEGL 832

Disease resistance protein. Resistance proteins guard the plant against pathogens that contain an appropriate avirulence protein via a direct or indirect interaction with this avirulence protein. That triggers a defense system including the hypersensitive response, which restricts the pathogen growth.

Nicotiana glutinosa (taxid: 35889)

>sp|O23530|SNC1_ARATH Protein SUPPRESSOR OF npr1-1, CONSTITUTIVE 1 OS=Arabidopsis thaliana GN=SNC1 PE=1 SV=3

 Score = 95.9 bits (237), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 78/219 (35%), Positives = 121/219 (55%), Gaps = 14/219 (6%)

Query: 70   LKSLPSNLSAEKLVFLKVPYSDIEQLWNGEKHYSNLNQIINATCNKLIAKTPNPTLMPHL 129
            L+S P  L +E + +L +  + IE++ +  K  +NL  +    C  L+     PT + +L
Sbjct: 923  LRSFP--LISESIKWLYLENTAIEEIPDLSKA-TNLKNLKLNNCKSLVTL---PTTIGNL 976

Query: 130  NKLVILNLRGSKSLKSLPSGIFNLEFLTKLDLSGCSKLKRLLEISSGNINWLFLRETAIE 189
             KLV   ++    L+ LP  + NL  L  LDLSGCS L R   + S NI WL+L  TAIE
Sbjct: 977  QKLVSFEMKECTGLEVLPIDV-NLSSLMILDLSGCSSL-RTFPLISTNIVWLYLENTAIE 1034

Query: 190  ELPSSIERLLRLGHLDLSDCKRLKSLPSSLFKLKSLGVLNLGGCSNLQRLPECLGQLSSP 249
            E+PS+I  L RL  L++ +C  L+ LP+ +  L SL +L+L GCS+L+  P     +S+ 
Sbjct: 1035 EIPSTIGNLHRLVKLEMKECTGLEVLPTDV-NLSSLMILDLSGCSSLRTFP----LISTR 1089

Query: 250  I-ILNLAKTNVERIPESIIQLFVLRYLLLSYSERIQSVS 287
            I  L L  T +E +P  I     L  L++   +R++++S
Sbjct: 1090 IECLYLQNTAIEEVPCCIEDFTRLTVLMMYCCQRLKTIS 1128

Disease resistance protein of the TIR-NB-LRR-type. Part of the RPP5 locus that contains a cluster of several paralogous disease resistance (R) genes. Resistance proteins guard the plant against pathogens that contain an appropriate avirulence protein via an indirect interaction with this avirulence protein. That triggers a defense system including the hypersensitive response, which restricts the pathogen growth. Regulated by RNA silencing. Expression regulated by MOS1 at chromatin level. Negatively regulated at the transcript level by BON1.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FH83|WRK52_ARATH Probable WRKY transcription factor 52 OS=Arabidopsis thaliana GN=WRKY52 PE=2 SV=3

 Score = 95.5 bits (236), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 94/305 (30%), Positives = 138/305 (45%), Gaps = 58/305 (19%)

Query: 1   GTKKIEGICLDMSTVKEIRLNLSTFTKMPKLRFLKFYSSSFNGENKCKVSYLQDPRFA-- 58
           G+++IEG+ LD S ++   L  S F  M  LR LK Y S  N E    +++      +  
Sbjct: 497 GSEEIEGLFLDTSNLR-FDLQPSAFKNMLNLRLLKIYCS--NPEVHPVINFPTGSLHSLP 553

Query: 59  -EVKYFHWHGYPLKSLPSNLSAEKLVFLKVPYSDIEQLWNGEKHYSNLNQIINATCNKLI 117
            E++  HW  YPLKSLP N     LV + +PYS +++LW G K+   L  I     + L+
Sbjct: 554 NELRLLHWENYPLKSLPQNFDPRHLVEINMPYSQLQKLWGGTKNLEMLRTIRLCHSHHLV 613

Query: 118 AKTPNPTLMPHLNKLVILNLRGSKSLKSLPSGIFNLEFLTKLDLSGCSKLKRLLEISSGN 177
               +   +     L +++L+G   L++ P+    L  L  ++LSGC K+K +LEI   N
Sbjct: 614 ----DIDDLLKAENLEVIDLQGCTRLQNFPAA-GRLLRLRVVNLSGCIKIKSVLEIPP-N 667

Query: 178 INWLFLRETAIEELP-----------------------------------SSIERLLRLG 202
           I  L L+ T I  LP                                   SS + L +L 
Sbjct: 668 IEKLHLQGTGILALPVSTVKPNHRELVNFLTEIPGLSEELERLTSLLESNSSCQDLGKLI 727

Query: 203 HLDLSDCKRLKSLPSSLFKLKSLGVLNLGGCSNL---QRLPECLGQLSSPIILNLAKTNV 259
            L+L DC  L+SLP+       L VL+L GCS+L   Q  P  L QL       L  T +
Sbjct: 728 CLELKDCSCLQSLPN--MANLDLNVLDLSGCSSLNSIQGFPRFLKQLY------LGGTAI 779

Query: 260 ERIPE 264
             +P+
Sbjct: 780 REVPQ 784

Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element. Acts also as a disease resistance protein conferring resistance to Ralstonia solanacearum.

Arabidopsis thaliana (taxid: 3702)

>sp|O82500|Y4117_ARATH Putative disease resistance protein At4g11170 OS=Arabidopsis thaliana GN=At4g11170 PE=2 SV=1

 Score = 93.2 bits (230), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 90/300 (30%), Positives = 147/300 (49%), Gaps = 52/300 (17%)

Query: 1   GTKKIEGICLDMSTVKE-IRLNLSTFTKMPKLRFLKFYSSSFNGENKCKVSYLQDPR--- 56
           GT  + GI LDM  +KE + ++  TF +M  L +LKFY SS   ++K KV  LQ P    
Sbjct: 525 GTGTVLGISLDMCEIKEELYISEKTFEEMRNLVYLKFYMSS-PIDDKMKVK-LQLPEEGL 582

Query: 57  --FAEVKYFHWHGYPLKSLPSNLSAEKLVFLKVPYSDIEQLWNGEKHYSNLNQIINATCN 114
               +++  HW  YPL+  PS+   E LV L + +S +++LW+G +   NL + +N   +
Sbjct: 583 SYLPQLRLLHWDAYPLEFFPSSFRPECLVELNMSHSKLKKLWSGVQPLRNL-RTMNLNSS 641

Query: 115 KLIAKTPN---------------------PTLMPHLNKLVILNLRGSKSLKSLPSGIFNL 153
           + +   PN                     P+ + +L  L++L +   K L+ +P+ I NL
Sbjct: 642 RNLEILPNLMEATKLNRLDLGWCESLVELPSSIKNLQHLILLEMSCCKKLEIIPTNI-NL 700

Query: 154 EFLTKLDLSGCSKLKRLLEISSGNINWLFLRETAIEELPSSIE-------------RLLR 200
             L  L    C++L+   EIS+ NI  L L  TAI E+P S++             ++ R
Sbjct: 701 PSLEVLHFRYCTRLQTFPEIST-NIRLLNLIGTAITEVPPSVKYWSKIDEICMERAKVKR 759

Query: 201 LGH-------LDLSDCKRLKSLPSSLFKLKSLGVLNLGGCSNLQRLPECLGQLSSPIILN 253
           L H       L L + K L+++P  L  L  L ++++  C N+  LP+  G +S+   +N
Sbjct: 760 LVHVPYVLEKLCLRENKELETIPRYLKYLPRLQMIDISYCINIISLPKLPGSVSALTAVN 819

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FL92|WRK16_ARATH Probable WRKY transcription factor 16 OS=Arabidopsis thaliana GN=WRKY16 PE=2 SV=1

 Score = 86.3 bits (212), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 89/309 (28%), Positives = 136/309 (44%), Gaps = 55/309 (17%)

Query: 3   KKIEGICLDMSTVKEIRLNLSTFTKMPKLRFLKFYSSS---FNGENKCKVSYLQDPRFAE 59
           ++IEG+ LD S +    +    F  M  LR  K YSS+    +  N  K S    P    
Sbjct: 492 EEIEGMFLDTSNLS-FDIKHVAFDNMLNLRLFKIYSSNPEVHHVNNFLKGSLSSLPNV-- 548

Query: 60  VKYFHWHGYPLKSLPSNLSAEKLVFLKVPYSDIEQLWNGEKHYSNLNQIINATCNKLIAK 119
           ++  HW  YPL+ LP N     LV + +PYS +++LW G K    L  I      +L+  
Sbjct: 549 LRLLHWENYPLQFLPQNFDPIHLVEINMPYSQLKKLWGGTKDLEMLKTIRLCHSQQLV-- 606

Query: 120 TPNPTLMPHLNKLVILNLRGSKSLKSLPSGIFNLEFLTKLDLSGCSKLKRLLEISSGNIN 179
             +   +     L +++L+G   L+S P+    L  L  ++LSGC+++K   EI   NI 
Sbjct: 607 --DIDDLLKAQNLEVVDLQGCTRLQSFPA-TGQLLHLRVVNLSGCTEIKSFPEIPP-NIE 662

Query: 180 WLFLRETAIEELPSSI-----ERLL----------------------------------- 199
            L L+ T I ELP SI       LL                                   
Sbjct: 663 TLNLQGTGIIELPLSIVKPNYRELLNLLAEIPGLSGVSNLEQSDLKPLTSLMKISTSYQN 722

Query: 200 --RLGHLDLSDCKRLKSLPSSLFKLKSLGVLNLGGCSNLQRLPECLGQLSSPIILNLAKT 257
             +L  L+L+DC RL+SLP ++  L+ L  L+L GCS L+ +      L    ++  A  
Sbjct: 723 PGKLSCLELNDCSRLRSLP-NMVNLELLKALDLSGCSELETIQGFPRNLKELYLVGTAVR 781

Query: 258 NVERIPESI 266
            V ++P+S+
Sbjct: 782 QVPQLPQSL 790

Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element. May also act as a disease resistance protein.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FKN7|DAR4_ARATH Protein DA1-related 4 OS=Arabidopsis thaliana GN=DAR4 PE=1 SV=2

 Score = 79.7 bits (195), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 77/291 (26%), Positives = 133/291 (45%), Gaps = 28/291 (9%)

Query: 2   TKKIEGICLDMSTVKEIRLNLSTFTKMPKLRFLKFYSSSFNGENKCKVSYLQDPRFAEVK 61
            + IE I LD S VK   +    F  M  L+FLK Y+S     +        D    E++
Sbjct: 516 AEHIESIFLDTSNVK-FDVKHDAFKNMFNLKFLKIYNSCSKYISGLNFPKGLDSLPYELR 574

Query: 62  YFHWHGYPLKSLPSNLSAEKLVFLKVPYSDIEQLWNGEKHYSNLNQIINATCNKLIAKTP 121
             HW  YPL+SLP +     LV L +PYS + +L    K    L ++I +   +L+    
Sbjct: 575 LLHWENYPLQSLPQDFDFGHLVKLSMPYSQLHKLGTRVKDLVMLKRLILSHSLQLV---- 630

Query: 122 NPTLMPHLNKLVILNLRGSKSLKSLPSGIFNLEFLTKLDLSGCSKLKRLLEISSGNINWL 181
              ++ +   + +++L+G   L+  P     L+ L  ++LSGC+++K    +   NI  L
Sbjct: 631 ECDILIYAQNIELIDLQGCTGLQRFPD-TSQLQNLRVVNLSGCTEIKCFSGVPP-NIEEL 688

Query: 182 FLRETAIEELP------------------SSIERLLRLGHLDLSDCKRLKSLPSSLFKLK 223
            L+ T I E+P                  + +E    + H+DL     L ++ S+   + 
Sbjct: 689 HLQGTRIREIPIFNATHPPKVKLDRKKLWNLLENFSDVEHIDLECVTNLATVTSNNHVMG 748

Query: 224 SLGVLNLGGCSNLQRLPECLGQLSSPIILNLAKTNVERI---PESIIQLFV 271
            L  LN+  CSNL+ LP+ +   S  ++     + +E+I   P ++ +L+V
Sbjct: 749 KLVCLNMKYCSNLRGLPDMVSLESLKVLYLSGCSELEKIMGFPRNLKKLYV 799

Arabidopsis thaliana (taxid: 3702)

>sp|P0CB16|DRL25_ARATH Putative disease resistance protein At4g19050 OS=Arabidopsis thaliana GN=At4g19050 PE=3 SV=2

 Score = 70.9 bits (172), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 59/176 (33%), Positives = 95/176 (53%), Gaps = 9/176 (5%)

Query: 117 IAKTPNPTLMPHLNKLVILN---LRGSKSLKSLPSGIFNLEFLTKLDLSGCSKLKRLLEI 173
           ++KT  P L   +  +V LN   LR    ++ LPS I  L  L   D+SGC KLK +   
Sbjct: 686 MSKTSLPELADTIADVVNLNKLLLRNCSLIEELPS-IEKLTHLEVFDVSGCIKLKNI-NG 743

Query: 174 SSGNINWLF---LRETAIEELPSSIERLLRLGHLDLSDCKRLKSLPSSLFKLKSLGVLNL 230
           S G +++L    L ET + ELP  I  L  L  L +  C +LK+LP+ L KL +L + ++
Sbjct: 744 SFGEMSYLHEVNLSETNLSELPDKISELSNLKELIIRKCSKLKTLPN-LEKLTNLEIFDV 802

Query: 231 GGCSNLQRLPECLGQLSSPIILNLAKTNVERIPESIIQLFVLRYLLLSYSERIQSV 286
            GC+ L+ +      LS    +NL++TN+  +P  I +L  L+ L+L    +++++
Sbjct: 803 SGCTELETIEGSFENLSCLHKVNLSETNLGELPNKISELSNLKELILRNCSKLKAL 858

Potential disease resistance protein.

Arabidopsis thaliana (taxid: 3702)

>sp|Q7SXW3|LRC40_DANRE Leucine-rich repeat-containing protein 40 OS=Danio rerio GN=lrrc40 PE=2 SV=1

 Score = 65.5 bits (158), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 65/220 (29%), Positives = 114/220 (51%), Gaps = 23/220 (10%)

Query: 112 TCNKLIAKTPNPTLMPHLNKLVILNLRGSKSLKSLPSGIFNLEFLTKLDLSGCSKLKRLL 171
           + NKL +   +  L+P    LV+L++  ++ L SLP  I +LE L KL LS      +L 
Sbjct: 88  SSNKLQSIPDDVKLLP---ALVVLDIHDNQ-LSSLPDSIGDLEQLQKLILSH----NKLT 139

Query: 172 EISSG-----NINWLFLRETAIEELPSSIERLLRLGHLDLSDCKRLKSLPSSLFKLKSLG 226
           E+ SG     N+  L L++  IE++P  + +L+ L  LDLS+   L  +P SL  L++L 
Sbjct: 140 ELPSGVWRLTNLRCLHLQQNLIEQIPRDLGQLVNLDELDLSN-NHLIDIPESLANLQNLV 198

Query: 227 VLNLGGCSNLQRLPECLGQLSSPIILNLAKTNVERIPESIIQLFVLRYLLLSYSERIQSV 286
            L+L  C+ L+ LP  + Q+ +  +L+ ++  +E IP  + Q+  L  L L +++     
Sbjct: 199 KLDL-SCNKLKSLPPAISQMKNLRMLDCSRNQMESIPPVLAQMESLEQLYLRHNKLRYLP 257

Query: 287 SLPLARGILE--------DTQRSPHMDHKLAVRWQEVQEN 318
            LP  + + E        +   + H+ H  A+   E+++N
Sbjct: 258 ELPCCKTLKELHCGNNQIEVLEAEHLKHLNALSLLELRDN 297

Danio rerio (taxid: 7955)

>sp|Q9RBS2|POPC_RALSO Protein PopC OS=Ralstonia solanacearum (strain GMI1000) GN=popC PE=4 SV=2

 Score = 57.4 bits (137), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 43/125 (34%), Positives = 72/125 (57%), Gaps = 3/125 (2%)

Query: 123 PTLMPHLNKLVILNLRGSKSLKSLPSGIFNLEFLTKLDLSGCSKLKRLLEISSGN-INWL 181
           P  + +L  L  L+L+G+K+ K+LP  ++ L  L +L LS    LK L  +  G+ +  L
Sbjct: 240 PATLENLFLLETLSLKGAKNFKALPDAVWRLPALQELKLSETG-LKSLPPVGGGSALQRL 298

Query: 182 FLRETAIEELPSSIERLLRLGHLDLSDCKRLKSLPSSLFKLKSLGVLNLGGCSNLQRLPE 241
            + ++ +E+LP+    L +L  L LS+ K L+ L S + +L +L  L+L     L+RLP+
Sbjct: 299 TIEDSPLEQLPAGFADLDQLASLSLSNTK-LEKLSSGIGQLPALKSLSLQDNPKLERLPK 357

Query: 242 CLGQL 246
            LGQ+
Sbjct: 358 SLGQV 362

Probably involved in host-pathogen interactions. May interact with plant target proteins; may modulate a plant signal transduction pathway.

Ralstonia solanacearum (strain GMI1000) (taxid: 267608)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	321
225460354	1174	PREDICTED: TMV resistance protein N-like	0.834	0.228	0.398	1e-42
359486073	1296	PREDICTED: TMV resistance protein N-like	0.884	0.219	0.393	5e-42
359486071	1261	PREDICTED: TMV resistance protein N-like	0.831	0.211	0.396	6e-42
297744796	596	unnamed protein product [Vitis vinifera]	0.859	0.463	0.365	2e-41
255563202	1158	leucine-rich repeat containing protein,	0.794	0.220	0.393	7e-41
224127913	467	predicted protein [Populus trichocarpa]	0.828	0.569	0.382	7e-41
224145016	1254	tir-nbs-lrr resistance protein [Populus	0.847	0.216	0.387	9e-41
359486075	1291	PREDICTED: TMV resistance protein N-like	0.878	0.218	0.385	1e-40
147768286	1206	hypothetical protein VITISV_033530 [Viti	0.859	0.228	0.362	3e-40
224145030	1435	tir-nbs-lrr resistance protein [Populus	0.897	0.200	0.367	8e-40

>gi|225460354|ref|XP_002263146.1| PREDICTED: TMV resistance protein N-like [Vitis vinifera]

 Score =  180 bits (456), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 120/301 (39%), Positives = 174/301 (57%), Gaps = 33/301 (10%)

Query: 1   GTKKIEGICLDMSTVKEIRLNLSTFTKMPKLRFLKFYSSSFNGENKCKVSYLQDPRFAEV 60
           GT+ +EG+ LD+S  KE+  +   FT+M +LR L+FY+   NG  K    +L +     +
Sbjct: 534 GTEAVEGLVLDLSASKELHFSAGAFTEMNRLRVLRFYNVKMNGNLK----FLSN----NL 585

Query: 61  KYFHWHGYPLKSLPSNLSAEKLVFLKVPYSDIEQLWNGEKHYSNLNQIINATCNKLIAKT 120
           +  +WH YPLKSLPSN   +KLV L +  S +EQLW G+K +  L + I  + ++ + +T
Sbjct: 586 RSLYWHEYPLKSLPSNFHPKKLVELNMCSSRLEQLWKGDKSFEKL-KFIKLSHSQYLTRT 644

Query: 121 PNPTLMPHL---------------------NKLVILNLRGSKSLKSLPSGIFNLEFLTKL 159
           P+ +  P+L                      KL+ LNL G K+LKS  S I ++  L  L
Sbjct: 645 PDFSGAPNLERLILEGCTSMVKVHPSIGALQKLIFLNLEGCKNLKSFASSI-HMNSLQIL 703

Query: 160 DLSGCSKLKRLLEI--SSGNINWLFLRETAIEELPSSIERLLRLGHLDLSDCKRLKSLPS 217
            LSGCSKLK+  E+  +  ++  L L ETA+ ELPSSI RL  L  L+L++CK+L SLP 
Sbjct: 704 TLSGCSKLKKFPEMLENMKSLRQLLLDETALRELPSSIGRLNGLVLLNLTNCKKLVSLPQ 763

Query: 218 SLFKLKSLGVLNLGGCSNLQRLPECLGQLSSPIILNLAKTNVERIPESIIQLFVLRYLLL 277
           SL KL SL +L L GCS L++LP+ LG L   + LN   + ++ +P SI  L  L+ L L
Sbjct: 764 SLCKLTSLQILTLAGCSELKKLPDELGSLRCLVNLNADGSGIQEVPPSITLLTNLQVLSL 823

Query: 278 S 278
           +
Sbjct: 824 A 824

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359486073|ref|XP_002272820.2| PREDICTED: TMV resistance protein N-like, partial [Vitis vinifera]

 Score =  177 bits (449), Expect = 5e-42,   Method: Compositional matrix adjust.
 Identities = 128/325 (39%), Positives = 178/325 (54%), Gaps = 41/325 (12%)

Query: 1   GTKKIEGICLDMSTVKEIRLNLSTFTKMPKLRFLKFYSSSFNGEN--------------K 46
           GT+ +EG+ L++ST+KE+  +++ FTKM KLR L+FY +   G +              +
Sbjct: 535 GTEAVEGMVLNLSTLKELHFSVNVFTKMNKLRVLRFYDAQIWGSSWIWRRNDRYKSPYTE 594

Query: 47  CKVSYLQDPRF--AEVKYFHWHGYPLKSLPSNLSAEKLVFLKVPYSDIEQLWNGEKHYSN 104
           CK     D +F    ++  +W GYPLKSLPSN   EKL+ LK+ +S +EQLW G K +  
Sbjct: 595 CKFHLSGDFKFLSNHLRSLYWDGYPLKSLPSNFHPEKLLELKMCFSQLEQLWEGNKSFQK 654

Query: 105 LNQIINATCNKLIAKTPNPTLMPHL---------------------NKLVILNLRGSKSL 143
           L + I  + ++ + KTP+ +  P L                      KL+ LNL G K+L
Sbjct: 655 L-KFIELSHSQHLIKTPDFSGAPKLRRIILEGCTSLVKVHPSIGALKKLIFLNLEGCKNL 713

Query: 144 KSLPSGIFNLEFLTKLDLSGCSKLKRLLEISS--GNINWLFLRETAIEELPSSIERLLRL 201
           KS  S I +LE L  L LSGCSKLK+  E+     N + L L+ TAI+ LP SIE L  L
Sbjct: 714 KSFLSSI-HLESLQILTLSGCSKLKKFPEVQGPMDNFSELSLKGTAIKGLPLSIEYLNGL 772

Query: 202 GHLDLSDCKRLKSLPSSLFKLKSLGVLNLGGCSNLQRLPECLGQLSSPIILNLAKTNVER 261
             L+L +CK L+SLPS +FKLKSL  L L  CS L++LPE    + S   L L  T +  
Sbjct: 773 ALLNLEECKSLESLPSCIFKLKSLKTLILSNCSRLKKLPEIGENMESLKELFLDDTGLRE 832

Query: 262 IPESIIQLFVLRYLLLSYSERIQSV 286
           +P SI  L  L  L L   +R+ S+
Sbjct: 833 LPSSIEHLNGLVLLKLKNCKRLASL 857

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359486071|ref|XP_002272667.2| PREDICTED: TMV resistance protein N-like [Vitis vinifera]

 Score =  177 bits (449), Expect = 6e-42,   Method: Compositional matrix adjust.
 Identities = 122/308 (39%), Positives = 169/308 (54%), Gaps = 41/308 (13%)

Query: 1   GTKKIEGICLDMSTVKEIRLNLSTFTKMPKLRFLKFYSSSFNGEN--------------K 46
           GT+ +EG+ L++ST+KE+  +++ FTKM KLR L+FY +   G +              +
Sbjct: 530 GTEAVEGMVLNLSTLKELHFSVNVFTKMNKLRVLRFYDAQIWGSSWIGRHNDRYKSPYTE 589

Query: 47  CKVSYLQDPRF--AEVKYFHWHGYPLKSLPSNLSAEKLVFLKVPYSDIEQLWNGEKHYSN 104
           CK     D +F    ++  HW GYPLKSLPSN   EKL+ LK+ +S +EQLW G K +  
Sbjct: 590 CKFHLSGDFKFLSNHLRSLHWDGYPLKSLPSNFHPEKLLELKMCFSQLEQLWEGNKSFQK 649

Query: 105 LNQIINATCNKLIAKTPNPTLMPH---------------------LNKLVILNLRGSKSL 143
           L + I  + ++ + KTP+ +  P                      L KL+ LNL G K+L
Sbjct: 650 L-KFIELSHSQHLIKTPDFSGAPKLRRIILEGCTSLVKVHPSIGALKKLIFLNLEGCKNL 708

Query: 144 KSLPSGIFNLEFLTKLDLSGCSKLKRLLEISSG--NINWLFLRETAIEELPSSIERLLRL 201
           KS  S I +LE L  + LSGCSKLK+  E+     N+  L L+ TAI+ LP SIE L  L
Sbjct: 709 KSFSSSI-HLESLQTITLSGCSKLKKFPEVQGAMDNLPELSLKGTAIKGLPLSIEYLNGL 767

Query: 202 GHLDLSDCKRLKSLPSSLFKLKSLGVLNLGGCSNLQRLPECLGQLSSPIILNLAKTNVER 261
             L+L +CK L+SLP  +FKLKSL  L L  CS L++LPE    + S   L L  T +  
Sbjct: 768 SLLNLEECKSLESLPGCIFKLKSLKTLILSNCSRLKKLPEIQENMESLKKLFLDDTGLRE 827

Query: 262 IPESIIQL 269
           +P SI  L
Sbjct: 828 LPSSIEHL 835

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297744796|emb|CBI38064.3| unnamed protein product [Vitis vinifera]

 Score =  176 bits (445), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 122/334 (36%), Positives = 177/334 (52%), Gaps = 58/334 (17%)

Query: 1   GTKKIEGICLDMSTVKEIRLNLSTFTKMPKLRFLKFYSSSFNG----------------- 43
           GT+ +EG+ LD+S  KE+  +   FT+M +LR L+FY+   NG                 
Sbjct: 92  GTEAVEGLVLDLSASKELHFSAGAFTEMNRLRVLRFYNVKMNGSLEYLSEKELFDTTYHP 151

Query: 44  --------------ENKCKVSYLQDPRF--AEVKYFHWHGYPLKSLPSNLSAEKLVFLKV 87
                         +  CK+    D +F    ++  +WH YPLKSLPSN   +KLV L +
Sbjct: 152 WRWRAHEIQRADEMQTDCKLHLSGDLKFLSNNLRSLYWHEYPLKSLPSNFHPKKLVELNM 211

Query: 88  PYSDIEQLWNGEKHYSNLNQIINATCNKLIAKTPNPTLMPHL------------------ 129
             S +EQLW G+K +  L + I  + ++ + +TP+ +  P+L                  
Sbjct: 212 CSSRLEQLWKGDKSFEKL-KFIKLSHSQYLTRTPDFSGAPNLERLILEGCTSMVKVHPSI 270

Query: 130 ---NKLVILNLRGSKSLKSLPSGIFNLEFLTKLDLSGCSKLKRLLEI--SSGNINWLFLR 184
               KL+ LNL G K+LKS  S I ++  L  L LSGCSKLK+  E+  +  ++  L L 
Sbjct: 271 GALQKLIFLNLEGCKNLKSFASSI-HMNSLQILTLSGCSKLKKFPEMLENMKSLRQLLLD 329

Query: 185 ETAIEELPSSIERLLRLGHLDLSDCKRLKSLPSSLFKLKSLGVLNLGGCSNLQRLPECLG 244
           ETA+ ELPSSI RL  L  L+L++CK+L SLP SL KL SL +L L GCS L++LP+ LG
Sbjct: 330 ETALRELPSSIGRLNGLVLLNLTNCKKLVSLPQSLCKLTSLQILTLAGCSELKKLPDELG 389

Query: 245 QLSSPIILNLAKTNVERIPESIIQLFVLRYLLLS 278
            L   + LN   + ++ +P SI  L  L+ L L+
Sbjct: 390 SLRCLVNLNADGSGIQEVPPSITLLTNLQVLSLA 423

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255563202|ref|XP_002522604.1| leucine-rich repeat containing protein, putative [Ricinus communis] gi|223538080|gb|EEF39691.1| leucine-rich repeat containing protein, putative [Ricinus communis]

 Score =  174 bits (440), Expect = 7e-41,   Method: Compositional matrix adjust.
 Identities = 111/282 (39%), Positives = 163/282 (57%), Gaps = 27/282 (9%)

Query: 1   GTKKIEGICLDMSTVKEIRLNLSTFTKMPKLRFLKFYSSSFNG--ENKCKVSYLQ--DPR 56
           GT+ I GI L MS  +++ LN + FT++  L+FL    S+  G  E +CKV + +  +  
Sbjct: 565 GTEAIVGILLGMSEARKLELNRNAFTRISNLKFLILRMSNNCGGFEEECKVQFPEGLESL 624

Query: 57  FAEVKYFHWHGYPLKSLPSNLSAEKLVFLKVPYSDIEQLWNGEKHYSNLNQIINATCNKL 116
             +++Y +WHGYPLK LP+N     L+ L  PYS +E LW G+K  S++ Q         
Sbjct: 625 PQQLRYLYWHGYPLKFLPANFHPTNLIELNFPYSRLEGLWEGDKVPSSIGQ--------- 675

Query: 117 IAKTPNPTLMPHLNKLVILNLRGSKSLKSLPSGIFNLEFLTKLDLSGCSKLKRLLEISSG 176
                       L KL  ++LR SK+++S P+ I +L+ L  LDLSGCS LK   E+S  
Sbjct: 676 ------------LTKLTFMSLRCSKNIRSFPTTI-DLQSLETLDLSGCSNLKIFPEVSR- 721

Query: 177 NINWLFLRETAIEELPSSIERLLRLGHLDLSDCKRLKSLPSSLFKLKSLGVLNLGGCSNL 236
           NI +L+L ETAI+E+P SIE L +L  L++ +C  L+ +PS++FKLKSLGVL L GC  L
Sbjct: 722 NIRYLYLNETAIQEVPLSIEHLSKLVVLNMKNCNELECIPSTIFKLKSLGVLILSGCKKL 781

Query: 237 QRLPECLGQLSSPIILNLAKTNVERIPESIIQLFVLRYLLLS 278
           +  PE L   +    L+L +T +  +P++   L  L  L  S
Sbjct: 782 ESFPEILETTNHLQHLSLDETAMVNLPDTFCNLKALNMLNFS 823

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224127913|ref|XP_002329208.1| predicted protein [Populus trichocarpa] gi|222870989|gb|EEF08120.1| predicted protein [Populus trichocarpa]

 Score =  174 bits (440), Expect = 7e-41,   Method: Compositional matrix adjust.
 Identities = 116/303 (38%), Positives = 164/303 (54%), Gaps = 37/303 (12%)

Query: 1   GTKKIEGICLDMSTVKEIRLNLSTFTKMPKLRFLKFYSSSFNGENKCKVSYLQDPRF--A 58
           GT+K+EGI  D S +KEI+L+   F +M  LR LK Y+S   G+N CKV +    +    
Sbjct: 56  GTEKVEGIFFDTSKIKEIKLSSKAFARMYNLRLLKIYNSEV-GKN-CKVYHPNGLKSLSD 113

Query: 59  EVKYFHWHGYPLKSLPSNLSAEKLVFLKVPYSDIEQLWNGE----KHYSNLNQIIN---- 110
           E++Y HW GYPLKSLPSN   E LV L + +S + +LW G+    KH+ +   I +    
Sbjct: 114 ELRYLHWDGYPLKSLPSNFHPENLVELNLSHSKVRELWKGDQKLHKHFESSKNIKSKYLK 173

Query: 111 ----ATCNKL-----------------IAKTPNPTLMPHLNKLVILNLRGSKSLKSLPSG 149
               + C+ L                  A    P  + HL++LV LNLR  K L +LP  
Sbjct: 174 ALNLSGCSNLKMYPETTEHVMYLNFNETAIKELPQSIGHLSRLVALNLRECKQLGNLPDS 233

Query: 150 IFNLEFLTKLDLSGCSKLKRLLEISSGNINWLFLRETAIEELPSSIERLLRLGHLDLSDC 209
           I  L+ +  +D+SGCS + +   I  GN  +L+L  TA+EE PSS+  L R+  LDLS+C
Sbjct: 234 ICLLKSIVIVDVSGCSNVTKFPNI-PGNTRYLYLSGTAVEEFPSSVGHLWRISSLDLSNC 292

Query: 210 KRLKSLPSSLFKLKSLGVLNLGGCSNLQRLPECLGQLSSPIILNLAKTNVERIPESIIQL 269
            RLK+LPS++++L  L  LNL GCS++   P     +     L L  T +E IP SI   
Sbjct: 293 GRLKNLPSTIYELAYLEKLNLSGCSSVTEFPNVSWNIKE---LYLDGTAIEEIPSSIACF 349

Query: 270 FVL 272
           + L
Sbjct: 350 YKL 352

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224145016|ref|XP_002325496.1| tir-nbs-lrr resistance protein [Populus trichocarpa] gi|222862371|gb|EEE99877.1| tir-nbs-lrr resistance protein [Populus trichocarpa]

 Score =  173 bits (439), Expect = 9e-41,   Method: Compositional matrix adjust.
 Identities = 116/299 (38%), Positives = 170/299 (56%), Gaps = 27/299 (9%)

Query: 1   GTKKIEGICLDMSTVKEIRLNLSTFTKMPKLRFLKFYSSSFNGENKCKVSYLQDPRFAEV 60
           GT K+EGI LD+S  +EI L+ +   +M KLR LK Y+S    + +  + +  +    E+
Sbjct: 523 GTGKVEGIFLDVSKTREIELSSTALERMYKLRLLKIYNSEAGVKCRVHLPHGLESLSEEL 582

Query: 61  KYFHWHGYPLKSLPSNLSAEKLVFLKVPYSDIEQLWNGEKHYSNLNQIINATCNKL---- 116
           +Y HW GYPL SLP N   + LV L +  S+++QLW G+++  NL  +  + C  +    
Sbjct: 583 RYLHWDGYPLTSLPCNFRPQNLVELNLSSSNVKQLWRGDQNLVNLKDVNLSNCEHITLLP 642

Query: 117 -IAKTPN---------------PTLMPHLNKLVILNLRGSKSLKSLPSGIFNLEFLTKLD 160
            ++K  N               P+ + HL+KLV L+LRG K L +LPS  FN  FL  L+
Sbjct: 643 DLSKARNLERLNLQFCTSLVKFPSSVQHLDKLVDLDLRGCKRLINLPSR-FNSSFLETLN 701

Query: 161 LSGCSKLKRLLEISSGNINWLFLRETAIEELPSSIERLLRLGHLDLSDCKRLKSLPSSLF 220
           LSGCS +K+  E ++  + +L L ETA+EELP SI  L  L  L+L +CK L +LP +++
Sbjct: 702 LSGCSNIKKCPE-TARKLTYLNLNETAVEELPQSIGELGGLVALNLKNCKLLVNLPENMY 760

Query: 221 KLKSLGVLNLGGCSNLQRLPECLGQLSSPI-ILNLAKTNVERIPESIIQLFVLRYLLLS 278
            LKSL + ++ GCS++ R P+     S  I  L L  T +E +P SI  L  L YL LS
Sbjct: 761 LLKSLLIADISGCSSISRFPD----FSRNIRYLYLNGTAIEELPSSIGDLRELIYLDLS 815

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359486075|ref|XP_002273047.2| PREDICTED: TMV resistance protein N-like [Vitis vinifera]

 Score =  173 bits (438), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 126/327 (38%), Positives = 174/327 (53%), Gaps = 45/327 (13%)

Query: 1   GTKKIEGICLDMSTVKEIRLNLSTFTKMPKLRFLKFYSSSFNGEN--------------K 46
           GT+ +EG+ L++ST+KE+  +++ FTKM KLR L+FY +   G +              +
Sbjct: 530 GTEAVEGMVLNLSTLKELHFSVNVFTKMNKLRVLRFYDAQIWGSSWIWRRNDRYKSPYTE 589

Query: 47  CKVSYLQDPRF--AEVKYFHWHGYPLKSLPSNLSAEKLVFLKVPYSDIEQLWNGEKHYSN 104
           CK     D +F    ++  +W GYPLKSLPSN   EKL+ LK+ +S +EQLW G K +  
Sbjct: 590 CKFHLSGDFKFLSNHLRSLYWDGYPLKSLPSNFHPEKLLELKMCFSQLEQLWEGNKSFQK 649

Query: 105 LN-----------------------QIINATCNKLIAKTPNPTLMPHLNKLVILNLRGSK 141
           L                        +II   C  L+   P+   +  L KL+ LNL G K
Sbjct: 650 LKFIELSHSQHLIKAPDFSGAPKLRRIILEGCTSLVKVHPS---IGALKKLIFLNLEGCK 706

Query: 142 SLKSLPSGIFNLEFLTKLDLSGCSKLKRLLEISSG--NINWLFLRETAIEELPSSIERLL 199
           +LKS  S I +LE L  L LSGCSKLK+L E+     N++ L L+ TAI+ LP SIE L 
Sbjct: 707 NLKSFLSSI-HLESLQILTLSGCSKLKKLPEVQGAMDNLSELSLKGTAIKGLPLSIEYLN 765

Query: 200 RLGHLDLSDCKRLKSLPSSLFKLKSLGVLNLGGCSNLQRLPECLGQLSSPIILNLAKTNV 259
            L   +L +CK L+SLP  +FKLKSL  L L  C  L++LPE    + S   L L  T +
Sbjct: 766 GLALFNLEECKSLESLPGCIFKLKSLKTLILSNCLRLKKLPEIQENMESLKELFLDDTGL 825

Query: 260 ERIPESIIQLFVLRYLLLSYSERIQSV 286
             +P SI  L  L  L L   +R+ S+
Sbjct: 826 RELPSSIEHLNGLVLLKLKNCKRLASL 852

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147768286|emb|CAN64759.1| hypothetical protein VITISV_033530 [Vitis vinifera]

 Score =  171 bits (434), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 121/334 (36%), Positives = 176/334 (52%), Gaps = 58/334 (17%)

Query: 1   GTKKIEGICLDMSTVKEIRLNLSTFTKMPKLRFLKFYSSSFNG----------------- 43
           GT+ +EG+ LD+S  KE+  +   FT+M +LR L+FY+   NG                 
Sbjct: 534 GTEAVEGLVLDLSASKELHXSAGAFTEMNRLRVLRFYNVKMNGSLEYLSEXELFDTTYHP 593

Query: 44  --------------ENKCKVSYLQDPRF--AEVKYFHWHGYPLKSLPSNLSAEKLVFLKV 87
                         +  CK+    D +F    ++  +WH YPLKSLPSN   +KLV L +
Sbjct: 594 WRWRAHEIQRADEMQTDCKLHLSGDLKFLSNNLRSLYWHEYPLKSLPSNFHPKKLVELNM 653

Query: 88  PYSDIEQLWNGEKHYSNLNQIINATCNKLIAKTPNPTLMPHL------------------ 129
             S +E LW G+K +  L + I  + ++ + +TP+ +  P+L                  
Sbjct: 654 CSSRLEXLWKGDKSFEKL-KFIKLSHSQYLTRTPDFSGAPNLERLILEGCKSMVKVHPSI 712

Query: 130 ---NKLVILNLRGSKSLKSLPSGIFNLEFLTKLDLSGCSKLKRLLEI--SSGNINWLFLR 184
               KL+ LNL G K+LKS  S I ++  L  L LSGCSKLK+  E+  +  ++  L L 
Sbjct: 713 GALQKLIFLNLXGCKNLKSFASSI-HMNSLQILTLSGCSKLKKFPEMLENMKSLRQLLLD 771

Query: 185 ETAIEELPSSIERLLRLGHLDLSDCKRLKSLPSSLFKLKSLGVLNLGGCSNLQRLPECLG 244
           ETA+ ELPSSI RL  L  L+L++CK+L SLP SL KL SL +L L GCS L++LP+ LG
Sbjct: 772 ETALRELPSSIGRLNGLVLLNLTNCKKLVSLPQSLCKLTSLQILTLAGCSELKKLPDELG 831

Query: 245 QLSSPIILNLAKTNVERIPESIIQLFVLRYLLLS 278
            L   + LN   + ++ +P SI  L  L+ L L+
Sbjct: 832 SLRCLVNLNADGSGIQEVPPSITLLTNLQVLSLA 865

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224145030|ref|XP_002325501.1| tir-nbs-lrr resistance protein [Populus trichocarpa] gi|222862376|gb|EEE99882.1| tir-nbs-lrr resistance protein [Populus trichocarpa]

 Score =  170 bits (431), Expect = 8e-40,   Method: Compositional matrix adjust.
 Identities = 117/318 (36%), Positives = 181/318 (56%), Gaps = 30/318 (9%)

Query: 2   TKKIEGICLDMSTVKEIRLNLSTFTKMPKLRFLKFYSSSFNGENKCKVSYLQ--DPRFAE 59
           T+K+EG+ LD+S ++EI L+ + F +M  LR LK Y+S+    +KC V      +    E
Sbjct: 539 TEKVEGMFLDVSEIREIELSSTAFARMYNLRLLKIYNSA--AGDKCTVHLPSGLESLSHE 596

Query: 60  VKYFHWHGYPLKSLPSNLSAEKLVFLKVPYSDIEQLWNGEKHYSNLNQIINATCNKL--- 116
           ++Y HW GYPL SLP N   + LV L +  S ++QLW G+++  NL  +  + C  +   
Sbjct: 597 LRYLHWDGYPLTSLPCNFRPQNLVELNLSSSKVKQLWRGDQNLGNLKDVNLSNCEHITFL 656

Query: 117 --IAKTPN---------------PTLMPHLNKLVILNLRGSKSLKSLPSGIFNLEFLTKL 159
             ++K  N               P+ + HL+KLV L+LRG K L +LPS I N   L  L
Sbjct: 657 PDLSKARNLERLNLQFCKSLVKFPSSIQHLDKLVDLDLRGCKRLINLPSRI-NSSCLETL 715

Query: 160 DLSGCSKLKRLLEISSGNINWLFLRETAIEELPSSIERLLRLGHLDLSDCKRLKSLPSSL 219
           +LSGC+ LK+  E ++G + +L L ETA+EELP SI  L  L  L+L +CK + +LP ++
Sbjct: 716 NLSGCANLKKCPE-TAGKLTYLNLNETAVEELPQSIGELSGLVTLNLKNCKLVLNLPENI 774

Query: 220 FKLKSLGVLNLGGCSNLQRLPECLGQLSSPIILNLAKTNVERIPESIIQLFVLRYLLLSY 279
           + LKSL ++++ GCS++ R P+    +     L L  T +E +P SI  L  L YL L  
Sbjct: 775 YLLKSLLIVDISGCSSISRFPDFSWNIR---YLYLNGTAIEELPSSIGGLRELIYLDLVG 831

Query: 280 SERIQSVSLPLAR-GILE 296
             R++++   +++ G LE
Sbjct: 832 CNRLKNLPSAVSKLGCLE 849

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	321
TAIR|locus:2153363	1261	AT5G45200 [Arabidopsis thalian	0.825	0.210	0.343	7.7e-27
TAIR|locus:2081810	1226	AT3G51570 [Arabidopsis thalian	0.850	0.222	0.332	1.5e-26
TAIR|locus:2153207	1165	AT5G45060 [Arabidopsis thalian	0.850	0.234	0.342	3.8e-26
TAIR|locus:2195478	1031	AT1G63870 [Arabidopsis thalian	0.859	0.267	0.288	2.9e-25
TAIR|locus:2827629	1355	AT2G17050 [Arabidopsis thalian	0.878	0.208	0.315	1.5e-24
TAIR|locus:2175075	1068	AT5G41750 [Arabidopsis thalian	0.844	0.253	0.314	7.4e-24
TAIR|locus:2118116	1895	WRKY19 [Arabidopsis thaliana (	0.750	0.127	0.351	2.1e-23
TAIR|locus:2160472	1038	AT5G41540 [Arabidopsis thalian	0.850	0.263	0.293	2.4e-23
TAIR|locus:2155322	1170	LAZ5 "LAZARUS 5" [Arabidopsis	0.856	0.235	0.309	2.7e-22
TAIR|locus:2147992	1189	AT5G11250 [Arabidopsis thalian	0.834	0.225	0.309	2.7e-22

TAIR|locus:2153363 AT5G45200 [Arabidopsis thaliana (taxid:3702)]

 Score = 315 (115.9 bits), Expect = 7.7e-27, P = 7.7e-27
 Identities = 97/282 (34%), Positives = 142/282 (50%)

Query:     4 KIEGICLDMSTVKEIRLNLSTFTKMPKLRFLKFYSSSFNGENKCKVSYLQDPR---FA-- 58
             K+ G+ LDM  VKE+ L+  TF KM  LR+LKFY+S  + E + + S L  P    F   
Sbjct:   558 KVRGVYLDMFEVKEMGLDSDTFNKMDDLRYLKFYNSHCHRECEAEDSKLNFPEGLEFLPQ 617

Query:    59 EVKYFHWHGYPLKSLPSNLSAEKLVFLKVPYSDIEQLWNGEKHYSNLNQIINATCNKLIA 118
             E++Y +W  YP K+LP N   + L+ LK+PYS IEQ+W  EK  SNL  +     +KL +
Sbjct:   618 ELRYLNWLKYPEKNLPINFDPKNLIDLKLPYSQIEQIWEEEKDTSNLQWLDLNHSSKLHS 677

Query:   119 KTPNPTLMPHLNKLVILNLRGSKSLKSLPSGIFNLEFLTKLDLSGCSKLKRLLEISSGNI 178
              +     +    KL  +NL G   LK+LP  + N+E L  L+L GC+ L+ L +I+   +
Sbjct:   678 LSG----LSRAQKLQSINLEGCTGLKTLPQVLQNMESLMFLNLRGCTSLESLPDITLVGL 733

Query:   179 NWLFLRETA-IEELPSSIERLLRLGHLDLSDCXXXXXXXXXXXXXXXXGVLNLGGCSNLQ 237
               L L   +  +E     + L  L +LD +                    L L  C NL 
Sbjct:   734 RTLILSNCSRFKEFKLIAKNLEEL-YLDGTAIKELPSTIGDLQKLIS---LKLKDCKNLL 789

Query:   238 RLPECLGQLSS--PIILNLAKTNVERIPESIIQLFVLRYLLL 277
              LP+ +G L +   IIL+   +++E  PE    L  L+ LLL
Sbjct:   790 SLPDSIGNLKAIQEIILS-GCSSLESFPEVNQNLKHLKTLLL 830

GO:0005622 "intracellular" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM

GO:0006952 "defense response" evidence=IEA;ISS

GO:0007165 "signal transduction" evidence=IEA

GO:0043531 "ADP binding" evidence=IEA

TAIR|locus:2081810 AT3G51570 [Arabidopsis thaliana (taxid:3702)]

 Score = 312 (114.9 bits), Expect = 1.5e-26, P = 1.5e-26
 Identities = 96/289 (33%), Positives = 142/289 (49%)

Query:     4 KIEGICLDMSTVK-EIRLNLSTFTKMPKLRFLKFYSSSFNGENKC--KVSYLQDPRFA-- 58
             ++ GI L+M+ +K E+ L+  TF  M  LR+LK YSS    + K   K++      F   
Sbjct:   548 EVRGIFLNMNEMKREMSLDSCTFKSMCGLRYLKIYSSHCPQQCKPNNKINLPDGLNFPLK 607

Query:    59 EVKYFHWHGYPLKSLPSNLSAEKLVFLKVPYSDIEQLWNGEKHYSNLN-QIINATCNKLI 117
             EV+Y HW  +PLK +P + + + LV LK+P+S IE++W+ +KH      + +N + +  +
Sbjct:   608 EVRYLHWLEFPLKEIPPDFNPQNLVDLKLPHSKIERIWSDDKHKDTPKLKWVNLSHSSNL 667

Query:   118 AKTPNPTLMPHLNKLVILNLRGSKSLKSLPSGIFNLEFLTKLDLSGCSKLKRLLEISSGN 177
                     +    +LV LNL+G  SLKSLP    NL  L  L LS CS LK    IS  N
Sbjct:   668 WDISG---LSKAQRLVFLNLKGCTSLKSLPE--INLVSLEILILSNCSNLKEFRVISQ-N 721

Query:   178 INWLFLRETAIEELPSSIERLLRLGHLDLSDCXXXXXXXXXXXXXXXXGVLNLGGCSNLQ 237
             +  L+L  T+I+ELP +   L RL  L++  C                  L L  C  LQ
Sbjct:   722 LETLYLDGTSIKELPLNFNILQRLVILNMKGCAKLKEFPDCLDDLKALKELILSDCWKLQ 781

Query:   238 RLPECLGQLSSPIILNLAKTNVERIPESIIQLFVLRYLLLSYSERIQSV 286
               P    ++    IL L  T +  IP     +  L+ L LS ++ I S+
Sbjct:   782 NFPAICERIKVLEILRLDTTTITEIP----MISSLQCLCLSKNDHISSL 826

GO:0005622 "intracellular" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM

GO:0006952 "defense response" evidence=IEA;ISS

GO:0007165 "signal transduction" evidence=IEA

GO:0043531 "ADP binding" evidence=IEA

GO:0016020 "membrane" evidence=IDA

TAIR|locus:2153207 AT5G45060 [Arabidopsis thaliana (taxid:3702)]

 Score = 308 (113.5 bits), Expect = 3.8e-26, P = 3.8e-26
 Identities = 101/295 (34%), Positives = 145/295 (49%)

Query:     1 GTKKIEGICLDMSTVK-EIRLNLSTFTKMPKLRFLKFYSSSFNGE----NKCKV-SYLQD 54
             G   + GI LD+S VK E  L+   F  M  LR+LK Y+S    E    NK  +   L+ 
Sbjct:   553 GAANVRGIFLDLSEVKVETSLDREHFKNMRNLRYLKLYNSHCPHECLTNNKINMPDGLEL 612

Query:    55 PRFAEVKYFHWHGYPLKSLPSNLSAEKLVFLKVPYSDIEQLWNGEKHYSNLNQIINATCN 114
             P   EV+  HW  +PL+ LP++     LV LK+PYS+IE+LW+G K    L  +     +
Sbjct:   613 P-LKEVRCLHWLKFPLEELPNDFDPINLVDLKLPYSEIERLWDGVKDTPVLKWVDLNHSS 671

Query:   115 KLIAKTPNPTLMPHLNKLVILNLRGSKSLKSLPSGIFNLEFLTKLDLSGCSKLKRLLEIS 174
             KL + +     +     L  LNL G  SL+SL     NL  L  L LS CS  K    I 
Sbjct:   672 KLCSLSG----LSKAQNLQRLNLEGCTSLESLRD--VNLTSLKTLTLSNCSNFKEFPLIP 725

Query:   175 SGNINWLFLRETAIEELPSSIERLLRLGHLDLSDCXXXXXXXXXXXXXXXXGVLNLGGCS 234
               N+  L+L  T+I +LP ++  L RL  L++ DC                  L L GCS
Sbjct:   726 E-NLKALYLDGTSISQLPDNVGNLKRLVLLNMKDCKVLETIPTCVSELKTLQKLVLSGCS 784

Query:   235 NLQRLPECLGQLSSPIILNLAKTNVERIPESIIQLFVLRYLLLSYSERIQSVSLP 289
              L+  PE + + S  I+L L  T+++ +P    QL  ++YL LS ++ +  + LP
Sbjct:   785 KLKEFPE-INKSSLKILL-LDGTSIKTMP----QLPSVQYLCLSRNDHL--IYLP 831

GO:0000166 "nucleotide binding" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0006952 "defense response" evidence=IEA;ISS

GO:0007165 "signal transduction" evidence=IEA

GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA

GO:0043531 "ADP binding" evidence=IEA

TAIR|locus:2195478 AT1G63870 [Arabidopsis thaliana (taxid:3702)]

 Score = 299 (110.3 bits), Expect = 2.9e-25, P = 2.9e-25
 Identities = 91/315 (28%), Positives = 150/315 (47%)

Query:     1 GTKKIEGICLDMSTVKEIRLNLSTFTKMPKLRFLKFYSSSFNGENKCKV-SYLQDPRFAE 59
             GTK + GI  D+S V E+ ++  +F ++P LRFLK + S  +G ++  +    + PR   
Sbjct:   523 GTKAMSGISFDISGVDEVVISGKSFKRIPNLRFLKVFKSRDDGNDRVHIPEETEFPR--R 580

Query:    60 VKYFHWHGYPLKSLPSNLSAEKLVFLKVPYSDIEQLWNG--------------EKHYSNL 105
             ++  HW  YP KSLP     + LV L +P S +E+LW G               +H   L
Sbjct:   581 LRLLHWEAYPCKSLPPTFQPQYLVELYMPSSQLEKLWEGTQRLTHLKKMNLFASRHLKEL 640

Query:   106 NQIINAT---------CNKLIAKTPNPTLMPHLNKLVILNLRGSKSLKSLPSGIFNLEFL 156
               + NAT         C  L+     P+   HL+KL  L +    +L+ +P+ + NL  L
Sbjct:   641 PDLSNATNLERMDLSYCESLVEI---PSSFSHLHKLEWLEMNNCINLQVIPAHM-NLASL 696

Query:   157 TKLDLSGCSKLKRLLEISSGNINWLFLRETAIEELPSSIERLLRLGHLDLSDCXXXXXXX 216
               +++ GCS+L+ +  + S NI  L++  TA+E +P SI    RL  L +S         
Sbjct:   697 ETVNMRGCSRLRNI-PVMSTNITQLYVSRTAVEGMPPSIRFCSRLERLSISSSGKLKGIT 755

Query:   217 XXXXXXXXXGVLNLGGCSNLQRLPECLGQLSSPIILNLAKTN-VERIPESIIQLFVLRYL 275
                       +++    S+++ +PEC+  L    ILNL+    +  +PE    L   R+L
Sbjct:   756 HLPISLKQLDLID----SDIETIPECIKSLHLLYILNLSGCRRLASLPELPSSL---RFL 808

Query:   276 LLSYSERIQSVSLPL 290
             +    E +++V  PL
Sbjct:   809 MADDCESLETVFCPL 823

GO:0000166 "nucleotide binding" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0006952 "defense response" evidence=IEA;ISS

GO:0007165 "signal transduction" evidence=IEA

GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA

GO:0043531 "ADP binding" evidence=IEA

TAIR|locus:2827629 AT2G17050 [Arabidopsis thaliana (taxid:3702)]

 Score = 294 (108.6 bits), Expect = 1.5e-24, P = 1.5e-24
 Identities = 94/298 (31%), Positives = 140/298 (46%)

Query:     2 TKKIEGICLDMSTVKEIRLNLSTFTKMPKLRFLKFYSSSFNGENKCKVSYLQDPRFAEVK 61
             T+ IE I LDMS +K   +    F  M  LRFLK YSS+     + +          E++
Sbjct:   359 TEDIEVIFLDMSNLKFF-VKPDAFKSMHNLRFLKIYSSNPGKHQRIRFREALQSLPNELR 417

Query:    62 YFHWHGYPLKSLPSNLSAEKLVFLKVPYSDIEQLWNGEKHYSNLNQIINATCNKLIAKTP 121
               HW  YPL+SLP +     LV L +PYS +++LW G K+   L  +  +    L+    
Sbjct:   418 LLHWEDYPLQSLPQHFDPTHLVELNMPYSKLQKLWGGTKNLEMLKMVRLSHSQDLVEIEE 477

Query:   122 NPTLMPHLNKLVILNLRGSKSLKSLPSGIFNLEFLTKLDLSGCSKLKRL-LEISSG---N 177
                L+   N + +++L+G   ++S P+   +L+ L  ++LSGC ++K   LE   G   N
Sbjct:   478 ---LIKSKN-IEVIDLQGCTKIQSFPA-TRHLQHLRVINLSGCVEIKSTQLEEFQGFPRN 532

Query:   178 INWLFLRETAIEELPSSIERLLRLGHLDLSDCXXXXXXXXXXXXXXXXGVLNLGGCSNLQ 237
             +  L+L  T I E+ SSI  L  L  LDLS+C                  L L GCS LQ
Sbjct:   533 LKELYLSGTGIREVTSSIH-LSSLEVLDLSNCKRLQNLPMGKGNLASLIKLMLSGCSKLQ 591

Query:   238 RLPECLGQLSSPIILNLAKTNVERIPESIIQLFVLRYLLLSYSERIQSVSLPLARGIL 295
              + +    L     L LA T++  +P SI  L  L        +++Q   LP+  G L
Sbjct:   592 NIQDLPTNLKE---LYLAGTSIREVPSSICHLTQLVVFDAENCKKLQD--LPMGMGNL 644

GO:0005622 "intracellular" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0006952 "defense response" evidence=IEA;ISS

GO:0007165 "signal transduction" evidence=IEA

GO:0043531 "ADP binding" evidence=IEA

TAIR|locus:2175075 AT5G41750 [Arabidopsis thaliana (taxid:3702)]

 Score = 286 (105.7 bits), Expect = 7.4e-24, P = 7.4e-24
 Identities = 93/296 (31%), Positives = 141/296 (47%)

Query:     1 GTKKIEGICLDMSTVKEIRLNLSTFTKMPKLRFLKFYSSSFNGENKCKVSYLQDPRFAE- 59
             GT+ ++GI  D S ++E+ +    F  M  L+FL+ Y  SFN E   ++   +D  +   
Sbjct:   525 GTESVKGISFDTSNIEEVSVGKGAFEGMRNLQFLRIYRDSFNSEGTLQIP--EDMEYIPP 582

Query:    60 VKYFHWHGYPLKSLPSNLSAEKLVFLKVPYSDIEQLWNGEKHYSNLNQIINATCNKLIAK 119
             V+  HW  YP KSLP   + E LV +++P S +++LW G +   NL  I + + +  + +
Sbjct:   583 VRLLHWQNYPRKSLPQRFNPEHLVKIRMPSSKLKKLWGGIQPLPNLKSI-DMSFSYSLKE 641

Query:   120 TPNPTLMPHLNKLVILNLRGSKSLKSLPSGIFNLEFLTKLDLSGCSKLKRLLEISSGNIN 179
              PN   +     L IL+L   KSL  LP  I NL  L  L++  CS LK    +   NIN
Sbjct:   642 IPN---LSKATNLEILSLEFCKSLVELPFSILNLHKLEILNVENCSMLK----VIPTNIN 694

Query:   180 WLFLRE---TAIEELPSSIERLLRLGHLDLSDCXXXXXXXXXXXXXXXXGVLNLGGCSNL 236
                L     T   EL +  +    +  L+L D                   L +G  S L
Sbjct:   695 LASLERLDMTGCSELRTFPDISSNIKKLNLGDTMIEDVPPSVGCWSRLDH-LYIGSRS-L 752

Query:   237 QRL--PECLGQLSSPIILNLAKTNVERIPESIIQLFVLRYLLLSYSERIQSV-SLP 289
             +RL  P C+  L       L K+N+E IPESII L  L +L ++   +++S+  LP
Sbjct:   753 KRLHVPPCITSLV------LWKSNIESIPESIIGLTRLDWLNVNSCRKLKSILGLP 802

GO:0000166 "nucleotide binding" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0006952 "defense response" evidence=IEA;ISS

GO:0007165 "signal transduction" evidence=IEA

GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA

GO:0043531 "ADP binding" evidence=IEA

TAIR|locus:2118116 WRKY19 [Arabidopsis thaliana (taxid:3702)]

 Score = 285 (105.4 bits), Expect = 2.1e-23, P = 2.1e-23
 Identities = 92/262 (35%), Positives = 136/262 (51%)

Query:    30 KLRFL--KFY--SS---SFNGENKCKVSYLQDPRFAEVKYFHWHGYPLKSLPSNLSAEKL 82
             KLR L  ++Y  SS   SFN EN  +++    P     K   W G   +   +N S EKL
Sbjct:  1206 KLRLLHWEYYPLSSLPKSFNPENLVELNL---PSSCAKKL--WKGKKARFCTTNSSLEKL 1260

Query:    83 VFLKVPYSDIEQLWNGEKHYS--NLNQIINATCNKLIAKTPNPTLMPHLNKLVILNLRGS 140
               +++ YSD  QL    +  S  NL  I    CN L++ + +   + +L KLV LNL+G 
Sbjct:  1261 KKMRLSYSD--QLTKIPRLSSATNLEHIDLEGCNSLLSLSQS---ISYLKKLVFLNLKGC 1315

Query:   141 KSLKSLPSGIFNLEFLTKLDLSGCSKLKRLLEISSGNINWLFLRETAIEELPSSIERLLR 200
               L+++PS + +LE L  L+LSGCSKL    EIS  N+  L++  T I+E+PSSI+ L+ 
Sbjct:  1316 SKLENIPSMV-DLESLEVLNLSGCSKLGNFPEISP-NVKELYMGGTMIQEIPSSIKNLVL 1373

Query:   201 LGHLDLSDCXXXXXXXXXXXXXXXXGVLNLGGCSNLQRLPECLGQLSSPIILNLAKTNVE 260
             L  LDL +                   LNL GC +L+R P+   ++     L+L++T+++
Sbjct:  1374 LEKLDLENSRHLKNLPTSIYKLKHLETLNLSGCISLERFPDSSRRMKCLRFLDLSRTDIK 1433

Query:   261 RIPESIIQLFVLRYLLLSYSER 282
              +P SI  L  L  LL   S R
Sbjct:  1434 ELPSSISYLTALDELLFVDSRR 1455

GO:0000166 "nucleotide binding" evidence=IEA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004713 "protein tyrosine kinase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0006468 "protein phosphorylation" evidence=IEA

GO:0006952 "defense response" evidence=IEA

GO:0007165 "signal transduction" evidence=IEA

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA

GO:0043531 "ADP binding" evidence=IEA

GO:0043565 "sequence-specific DNA binding" evidence=IEA

GO:0009941 "chloroplast envelope" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

GO:0006944 "cellular membrane fusion" evidence=RCA

GO:0009556 "microsporogenesis" evidence=RCA

GO:0052543 "callose deposition in cell wall" evidence=RCA

TAIR|locus:2160472 AT5G41540 [Arabidopsis thaliana (taxid:3702)]

 Score = 281 (104.0 bits), Expect = 2.4e-23, P = 2.4e-23
 Identities = 86/293 (29%), Positives = 144/293 (49%)

Query:     1 GTKKIEGICLDMSTVKEIRLNLSTFTKMPKLRFLKFYSSSFNGENKCKVSYLQDPRFA-E 59
             GT  + GI  DMS V E  ++   F  M  LRFL+ Y  S     K  +  ++D ++   
Sbjct:   525 GTGSVLGISFDMSKVSEFSISGRAFEAMRNLRFLRIYRRS--SSKKVTLRIVEDMKYLPR 582

Query:    60 VKYFHWHGYPLKSLPSNLSAEKLVFLKVPYSDIEQLWNGEKHYSNLNQIINATCNKLIAK 119
             ++  HW  YP KSLP     E+LV L +P+S++E+LW G +  +NL  I + + ++ + +
Sbjct:   583 LRLLHWEHYPRKSLPRRFQPERLVVLHMPHSNLEKLWGGIQSLTNLKNI-DLSFSRKLKE 641

Query:   120 TPNPTLMPHLNKLVILNLRGSKSLKSLPSGIFNLEFLTKLDLSGCSKLKRLLEISSGNIN 179
              PN +   +L  L ++      SL  LPS I NL+ L  L + GC    ++L++   NIN
Sbjct:   642 IPNLSNATNLETLTLIKC---SSLVELPSSISNLQKLKALMMFGC----KMLKVVPTNIN 694

Query:   180 WLFLRE---TAIEELPSSIERLLRLGHLDLSDCXXXXXXXXXXXXXXXXGVLNLGGCSNL 236
              + L +   T   +L S  +    +  LD+                     L+L  C +L
Sbjct:   695 LVSLEKVSMTLCSQLSSFPDISRNIKSLDVGKTKIEEVPPSVVKYWSRLDQLSLE-CRSL 753

Query:   237 QRLPECLGQLSSPIILNLAKTNVERIPESIIQLFVLRYLLLSYSERIQSVSLP 289
             +RL      ++   +L+L+ +++E IP+ +I+L  LR L +    ++  VSLP
Sbjct:   754 KRLTYVPPSIT---MLSLSFSDIETIPDCVIRLTRLRTLTIKCCRKL--VSLP 801

GO:0000166 "nucleotide binding" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM

GO:0006952 "defense response" evidence=IEA;ISS

GO:0007165 "signal transduction" evidence=IEA

GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA

GO:0043531 "ADP binding" evidence=IEA

TAIR|locus:2155322 LAZ5 "LAZARUS 5" [Arabidopsis thaliana (taxid:3702)]

 Score = 272 (100.8 bits), Expect = 2.7e-22, P = 2.7e-22
 Identities = 90/291 (30%), Positives = 145/291 (49%)

Query:     3 KKIEGICLDMSTV-KEIRLNLSTFTKMPKLRFLKFYSSSFN--GENKCKVSYLQDPRFA- 58
             + + GI LDMS V +E+  + + F+ M  LR+LK YSS  +  GE   K   +++ +   
Sbjct:   596 ENVRGIFLDMSKVPEEMTFDGNIFSNMCNLRYLKIYSSVCHKEGEGIFKFDTVREIQLPL 655

Query:    59 -EVKYFHWHGYPLKSLPSNLSAEKLVFLKVPYSDIEQLWNGEKHYSNLNQIINATCNKLI 117
              +V+Y HW  YP + LPS+ + E LV L++PYS I+++W G K    L    N + +   
Sbjct:   656 DKVRYLHWMKYPWEKLPSDFNPENLVDLELPYSSIKKVWEGVKDTPILKWA-NLSYS--- 711

Query:   118 AKTPNPTLMPHLNKLVILNLRGSKSLKSLPSGIFNLEFLTKLDLSGCSKLKRLLEISSGN 177
             +K  N   + +   L  LNL G  SL  LP  + N++ L  L++  C+ L  L  I   +
Sbjct:   712 SKLTNLLGLSNAKNLERLNLEGCTSLLKLPQEMENMKSLVFLNMRRCTSLTCLQSIKVSS 771

Query:   178 INWLFLRETA-IEELPSSIERLLRLGHLDLSDCXXXXXXXXXXXXXXXXGVLNLGGCSNL 236
             +  L L + + +EE     E L  L +LD +                   VLN+ GC+ L
Sbjct:   772 LKILILSDCSKLEEFEVISENLEEL-YLDGTAIKGLPPAAGDLTRLV---VLNMEGCTEL 827

Query:   237 QRLPECLGQLSSPIILNLAK-TNVERIPESIIQLFVLRYLLLSYSERIQSV 286
             + LP+ LG+  +   L L+  + +E +P  +  +  LR LLL    RI+ +
Sbjct:   828 ESLPKRLGKQKALQELVLSGCSKLESVPTDVKDMKHLRLLLLD-GTRIRKI 877

GO:0005622 "intracellular" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0006952 "defense response" evidence=IEA;ISS

GO:0007165 "signal transduction" evidence=IEA

GO:0043531 "ADP binding" evidence=IEA

GO:0009626 "plant-type hypersensitive response" evidence=IMP

GO:0051607 "defense response to virus" evidence=IMP

TAIR|locus:2147992 AT5G11250 [Arabidopsis thaliana (taxid:3702)]

 Score = 272 (100.8 bits), Expect = 2.7e-22, P = 2.7e-22
 Identities = 87/281 (30%), Positives = 132/281 (46%)

Query:     1 GTKKIEGICLDMSTVKEIRLNLSTFTKMPKLRFLKFYSSSFNGENKCKVSYLQDPRFAEV 60
             G+K + GI       +E  +N   F  M  L+FL+F       +    +SYL      ++
Sbjct:   578 GSKSVIGIDFHYIIEEEFDMNERVFEGMSNLQFLRFDCDHDTLQLSRGLSYLS----RKL 633

Query:    61 KYFHWHGYPLKSLPSNLSAEKLVFLKVPYSDIEQLWNGEKHYSNLNQI-INATCNKLIAK 119
             +   W  +P+  LPS ++ E L+ L + +S ++ LW G K   NL Q+ ++ + N  + +
Sbjct:   634 QLLDWIYFPMTCLPSTVNVEFLIELNLTHSKLDMLWEGVKPLHNLRQMDLSYSVN--LKE 691

Query:   120 TPNPTLMPHLNKLVILNLRGSKSLKSLPSGIFNLEFLTKLDLSGCSKLKRLLEISSG-NI 178
              P+ +   +L KL++ N     SL  LPS I N   L  LDL+GCS L  L       N+
Sbjct:   692 LPDLSTAINLRKLILSNC---SSLIKLPSCIGNAINLEDLDLNGCSSLVELPSFGDAINL 748

Query:   179 NWLFLRETA-IEELPSSIERLLRLGHLDLSDCXXXXXXXXXXXXXXXXGVLNLGGCSNLQ 237
               L LR  + + ELPSSI   + L  LDL  C                 +L+L GCSNL 
Sbjct:   749 QKLLLRYCSNLVELPSSIGNAINLRELDLYYCSSLIRLPSSIGNAINLLILDLNGCSNLL 808

Query:   238 RLPECLGQLSSPIILNLAK-TNVERIPESIIQLFVLRYLLL 277
              LP  +G   +   L+L +   +  +P SI     L+ LLL
Sbjct:   809 ELPSSIGNAINLQKLDLRRCAKLLELPSSIGNAINLQNLLL 849

GO:0005622 "intracellular" evidence=IEA

GO:0006952 "defense response" evidence=IEA;ISS

GO:0007165 "signal transduction" evidence=IEA

GO:0043531 "ADP binding" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	eugene3.01250001	hypothetical protein (467 aa)
		(Populus trichocarpa)
Predicted Functional Partners:
	eugene3.02220007	annotation not avaliable (671 aa)			•						0.460
	eugene3.00190764	hypothetical protein (586 aa)			•						0.460
	eugene3.27720001	hypothetical protein (224 aa)			•						0.455
	eugene3.03590002	hypothetical protein (228 aa)			•						0.455
	fgenesh4_pg.C_LG_VI000128	hypothetical protein (228 aa)			•						0.454
	eugene3.02620001	hypothetical protein (209 aa)			•						0.451
	gw1.VI.2172.1	hypothetical protein (315 aa)			•						0.437
	eugene3.02170002	hypothetical protein (188 aa)			•						0.414
	eugene3.00150435	hypothetical protein (198 aa)			•						0.411
	fgenesh4_pg.C_LG_III000118	hypothetical protein (297 aa)			•						0.410

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	321
PLN03210	1153	PLN03210, PLN03210, Resistant to P	2e-37
PLN03210	1153	PLN03210, PLN03210, Resistant to P	4e-21
COG4886	394	COG4886, COG4886, Leucine-rich repeat (LRR) protei	3e-04
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	0.004

>gnl|CDD|215633 PLN03210, PLN03210, Resistant to P

 Score =  141 bits (357), Expect = 2e-37
 Identities = 112/367 (30%), Positives = 175/367 (47%), Gaps = 80/367 (21%)

Query: 1   GTKKIEGICLDMSTVKEIRLNLSTFTKMPKLRFLKFYSSSFNGENKCKVSYLQDPRF--- 57
           GTKK+ GI LD+  + E+ ++ + F  M  L FLKFY+  +  + K +V +     F   
Sbjct: 530 GTKKVLGITLDIDEIDELHIHENAFKGMRNLLFLKFYTKKW--DQKKEVRWHLPEGFDYL 587

Query: 58  -AEVKYFHWHGYPLKSLPSNLSAEKLVFLKVPYSDIEQLWNGEKHYSNLNQIINATCNKL 116
             +++   W  YPL+ +PSN   E LV L++  S +E+LW+G    + L  I +   +K 
Sbjct: 588 PPKLRLLRWDKYPLRCMPSNFRPENLVKLQMQGSKLEKLWDGVHSLTGLRNI-DLRGSKN 646

Query: 117 IAKTPN---------------------PTLMPHLNKLVILNLRGSKSLKSLPSGIFNLEF 155
           + + P+                     P+ + +LNKL  L++   ++L+ LP+GI NL+ 
Sbjct: 647 LKEIPDLSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTGI-NLKS 705

Query: 156 LTKLDLSGCSKLKRLLEISSGNINWLFLRETAIEELPSSI--ERLLRLG----------- 202
           L +L+LSGCS+LK   +IS+ NI+WL L ETAIEE PS++  E L  L            
Sbjct: 706 LYRLNLSGCSRLKSFPDIST-NISWLDLDETAIEEFPSNLRLENLDELILCEMKSEKLWE 764

Query: 203 -----------------HLDLSDCKRLKSLPSSLFKLKSLGVLNLGGCSNLQRLP----- 240
                             L LSD   L  LPSS+  L  L  L +  C NL+ LP     
Sbjct: 765 RVQPLTPLMTMLSPSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPTGINL 824

Query: 241 --------------ECLGQLSSPI-ILNLAKTNVERIPESIIQLFVLRYLLLSYSERIQS 285
                              +S+ I  LNL++T +E +P  I +   L +L ++    +Q 
Sbjct: 825 ESLESLDLSGCSRLRTFPDISTNISDLNLSRTGIEEVPWWIEKFSNLSFLDMNGCNNLQR 884

Query: 286 VSLPLAR 292
           VSL +++
Sbjct: 885 VSLNISK 891

syringae 6; Provisional. Length = 1153

>gnl|CDD|215633 PLN03210, PLN03210, Resistant to P

 Score = 93.8 bits (233), Expect = 4e-21
 Identities = 59/172 (34%), Positives = 97/172 (56%), Gaps = 7/172 (4%)

Query: 70  LKSLPSNLSAEKLVFLKVPYSDIEQLWNGEKHYSNLNQIINATCNKL-IAKTPN----PT 124
           ++  PSNL  E L  L +     E+LW   +  + L  +++ +  +L ++  P+    P+
Sbjct: 737 IEEFPSNLRLENLDELILCEMKSEKLWERVQPLTPLMTMLSPSLTRLFLSDIPSLVELPS 796

Query: 125 LMPHLNKLVILNLRGSKSLKSLPSGIFNLEFLTKLDLSGCSKLKRLLEISSGNINWLFLR 184
            + +L+KL  L +    +L++LP+GI NLE L  LDLSGCS+L+   +IS+ NI+ L L 
Sbjct: 797 SIQNLHKLEHLEIENCINLETLPTGI-NLESLESLDLSGCSRLRTFPDIST-NISDLNLS 854

Query: 185 ETAIEELPSSIERLLRLGHLDLSDCKRLKSLPSSLFKLKSLGVLNLGGCSNL 236
            T IEE+P  IE+   L  LD++ C  L+ +  ++ KLK L  ++   C  L
Sbjct: 855 RTGIEEVPWWIEKFSNLSFLDMNGCNNLQRVSLNISKLKHLETVDFSDCGAL 906

syringae 6; Provisional. Length = 1153

>gnl|CDD|227223 COG4886, COG4886, Leucine-rich repeat (LRR) protein [Function unknown]

 Score = 41.9 bits (98), Expect = 3e-04
 Identities = 54/177 (30%), Positives = 74/177 (41%), Gaps = 26/177 (14%)

Query: 126 MPHLNKLVILNLRGSKSLKSLPSGIFNLEFLTKLDLSG--CSKLKRLLEISSGNINWLFL 183
           + +L  L  L+L     L+S  S +  L  LT LDL     + +  L+ +   N+  L L
Sbjct: 89  LLNLLPLPSLDL-NLNRLRSNISELLELTNLTSLDLDNNNITDIPPLIGLLKSNLKELDL 147

Query: 184 RETAIEELPSSIERLLRLGHLDLSDCKRLKSLPSSLFKLKSLGVLNLGG----------- 232
            +  IE LPS +  L  L +LDLS    L  LP  L  L +L  L+L G           
Sbjct: 148 SDNKIESLPSPLRNLPNLKNLDLSFND-LSDLPKLLSNLSNLNNLDLSGNKISDLPPEIE 206

Query: 233 -CSNLQRL----------PECLGQLSSPIILNLAKTNVERIPESIIQLFVLRYLLLS 278
             S L+ L             L  L +   L L+   +E +PESI  L  L  L LS
Sbjct: 207 LLSALEELDLSNNSIIELLSSLSNLKNLSGLELSNNKLEDLPESIGNLSNLETLDLS 263

Length = 394

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 38.3 bits (89), Expect = 0.004
 Identities = 26/64 (40%), Positives = 37/64 (57%)

Query: 191 LPSSIERLLRLGHLDLSDCKRLKSLPSSLFKLKSLGVLNLGGCSNLQRLPECLGQLSSPI 250
           +P+ I +L  L  ++LS      ++P SL  + SL VL+L   S    +PE LGQL+S  
Sbjct: 434 IPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLR 493

Query: 251 ILNL 254
           ILNL
Sbjct: 494 ILNL 497

Length = 623

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	321
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	99.95
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	99.94
PLN03210	1153	Resistant to P. syringae 6; Provisional	99.94
KOG4194	873	consensus Membrane glycoprotein LIG-1 [Signal tran	99.92
KOG4194	873	consensus Membrane glycoprotein LIG-1 [Signal tran	99.91
KOG0444	1255	consensus Cytoskeletal regulator Flightless-I (con	99.86
KOG0444	1255	consensus Cytoskeletal regulator Flightless-I (con	99.85
KOG0472	565	consensus Leucine-rich repeat protein [Function un	99.82
KOG0472	565	consensus Leucine-rich repeat protein [Function un	99.76
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	99.75
PLN03210	1153	Resistant to P. syringae 6; Provisional	99.75
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	99.73
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	99.72
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	99.72
KOG0618	1081	consensus Serine/threonine phosphatase 2C containi	99.69
KOG0617	264	consensus Ras suppressor protein (contains leucine	99.67
KOG0618	1081	consensus Serine/threonine phosphatase 2C containi	99.67
KOG0617	264	consensus Ras suppressor protein (contains leucine	99.61
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	99.59
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	99.5
KOG4237	498	consensus Extracellular matrix protein slit, conta	99.5
KOG4237	498	consensus Extracellular matrix protein slit, conta	99.44
KOG1909	382	consensus Ran GTPase-activating protein [RNA proce	99.33
KOG0532	722	consensus Leucine-rich repeat (LRR) protein, conta	99.31
KOG0532	722	consensus Leucine-rich repeat (LRR) protein, conta	99.26
COG4886	394	Leucine-rich repeat (LRR) protein [Function unknow	99.06
COG4886	394	Leucine-rich repeat (LRR) protein [Function unknow	99.05
KOG3207	505	consensus Beta-tubulin folding cofactor E [Posttra	99.05
KOG1259	490	consensus Nischarin, modulator of integrin alpha5	99.01
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	99.01
PLN03150	623	hypothetical protein; Provisional	98.99
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	98.96
KOG3207	505	consensus Beta-tubulin folding cofactor E [Posttra	98.94
KOG1259	490	consensus Nischarin, modulator of integrin alpha5	98.94
KOG1909	382	consensus Ran GTPase-activating protein [RNA proce	98.86
PLN03150	623	hypothetical protein; Provisional	98.73
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	98.71
KOG0531	414	consensus Protein phosphatase 1, regulatory subuni	98.71
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	98.69
KOG0531	414	consensus Protein phosphatase 1, regulatory subuni	98.68
KOG4658	889	consensus Apoptotic ATPase [Signal transduction me	98.66
KOG4658	889	consensus Apoptotic ATPase [Signal transduction me	98.66
PRK15386	426	type III secretion protein GogB; Provisional	98.49
KOG2120	419	consensus SCF ubiquitin ligase, Skp2 component [Po	98.42
COG5238	388	RNA1 Ran GTPase-activating protein (RanGAP) involv	98.35
PRK15386	426	type III secretion protein GogB; Provisional	98.33
KOG2120	419	consensus SCF ubiquitin ligase, Skp2 component [Po	98.27
KOG1859	1096	consensus Leucine-rich repeat proteins [General fu	98.21
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	98.19
KOG3665	699	consensus ZYG-1-like serine/threonine protein kina	98.14
KOG1859	1096	consensus Leucine-rich repeat proteins [General fu	98.13
KOG4579	177	consensus Leucine-rich repeat (LRR) protein associ	97.92
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	97.85
KOG2982	418	consensus Uncharacterized conserved protein [Funct	97.83
COG5238	388	RNA1 Ran GTPase-activating protein (RanGAP) involv	97.74
KOG1644	233	consensus U2-associated snRNP A' protein [RNA proc	97.62
KOG4341	483	consensus F-box protein containing LRR [General fu	97.6
KOG1644	233	consensus U2-associated snRNP A' protein [RNA proc	97.59
KOG3665	699	consensus ZYG-1-like serine/threonine protein kina	97.51
KOG2982	418	consensus Uncharacterized conserved protein [Funct	97.48
KOG4579	177	consensus Leucine-rich repeat (LRR) protein associ	97.32
KOG4341	483	consensus F-box protein containing LRR [General fu	97.28
KOG2739	260	consensus Leucine-rich acidic nuclear protein [Cel	97.12
KOG2123	388	consensus Uncharacterized conserved protein [Funct	96.66
KOG2739	260	consensus Leucine-rich acidic nuclear protein [Cel	96.62
PF13306	129	LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_	96.49
KOG2123	388	consensus Uncharacterized conserved protein [Funct	96.31
PF13306	129	LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_	96.19
KOG1947	482	consensus Leucine rich repeat proteins, some prote	95.8
PF00560	22	LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Le	95.63
PF13504	17	LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OO	95.39
PF00560	22	LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Le	95.31
KOG1947	482	consensus Leucine rich repeat proteins, some prote	93.81
KOG3864	221	consensus Uncharacterized conserved protein [Funct	92.76
smart00369	26	LRR_TYP Leucine-rich repeats, typical (most popula	91.92
smart00370	26	LRR Leucine-rich repeats, outliers.	91.92
KOG4308	478	consensus LRR-containing protein [Function unknown	90.39
KOG4308	478	consensus LRR-containing protein [Function unknown	88.58
KOG3864	221	consensus Uncharacterized conserved protein [Funct	87.4
smart00364	26	LRR_BAC Leucine-rich repeats, bacterial type.	85.94
smart00367	26	LRR_CC Leucine-rich repeat - CC (cysteine-containi	84.3

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=99.95  E-value=3.2e-27  Score=238.98  Aligned_cols=266  Identities=22%  Similarity=0.246  Sum_probs=132.2

Q ss_pred             ceEEEEeecCchhhhccChhhhcCCCCceEEEEeecCCCCccccceeccCCCC-c-CcccEEEecCCCCCCCCCcCCcCc
Q 037308            4 KIEGICLDMSTVKEIRLNLSTFTKMPKLRFLKFYSSSFNGENKCKVSYLQDPR-F-AEVKYFHWHGYPLKSLPSNLSAEK   81 (321)
Q Consensus         4 ~~~~~~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~l~-~-~~L~~l~l~~~~l~~~~~~~~l~~   81 (321)
                      +|..+.+  +++......+..+..+++|++|++++|.+++..+      ..+. . .+|++|++++|.+........+++
T Consensus        70 ~v~~L~L--~~~~i~~~~~~~~~~l~~L~~L~Ls~n~~~~~ip------~~~~~~l~~L~~L~Ls~n~l~~~~p~~~l~~  141 (968)
T PLN00113         70 RVVSIDL--SGKNISGKISSAIFRLPYIQTINLSNNQLSGPIP------DDIFTTSSSLRYLNLSNNNFTGSIPRGSIPN  141 (968)
T ss_pred             cEEEEEe--cCCCccccCChHHhCCCCCCEEECCCCccCCcCC------hHHhccCCCCCEEECcCCccccccCccccCC
Confidence            4444444  4443333335678888899999998888665433      2211 2 566666666665532211224555


Q ss_pred             eeEEeccCCccc-ccccCCCCCCChHhHHhhccccccccCCCCCCCCCCCCccEEEccCCCCCcccCccccCcccCcEEe
Q 037308           82 LVFLKVPYSDIE-QLWNGEKHYSNLNQIINATCNKLIAKTPNPTLMPHLNKLVILNLRGSKSLKSLPSGIFNLEFLTKLD  160 (321)
Q Consensus        82 L~~L~l~~~~l~-~~~~~~~~l~~L~~~l~l~~~~l~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~l~~l~~L~~L~  160 (321)
                      |++|++++|.+. .++..++.+++|+. ++++.|.+.+.+|.  .+..+++|++|++++|.+.+.+|..++.+++|++|+
T Consensus       142 L~~L~Ls~n~~~~~~p~~~~~l~~L~~-L~L~~n~l~~~~p~--~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~  218 (968)
T PLN00113        142 LETLDLSNNMLSGEIPNDIGSFSSLKV-LDLGGNVLVGKIPN--SLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIY  218 (968)
T ss_pred             CCEEECcCCcccccCChHHhcCCCCCE-EECccCcccccCCh--hhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEE
Confidence            555555555554 23334445555555 55555555444443  455555555555555554444454455555555555


Q ss_pred             cCCCCCccccccc--ccCCccEEEeccccccc-cChhhhccCCCCeEecccCcccccccccccCCCCCCEEEecCCCCCC
Q 037308          161 LSGCSKLKRLLEI--SSGNINWLFLRETAIEE-LPSSIERLLRLGHLDLSDCKRLKSLPSSLFKLKSLGVLNLGGCSNLQ  237 (321)
Q Consensus       161 l~~~~~~~~~~~~--~~~~L~~L~l~~~~i~~-l~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~~~~~~  237 (321)
                      +++|...+.+|..  .+++|++|++++|.+.+ +|..+..+++|++|++++|.+.+..|..+..+++|+.|++++|.+.+
T Consensus       219 L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~  298 (968)
T PLN00113        219 LGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSG  298 (968)
T ss_pred             CcCCccCCcCChhHhcCCCCCEEECcCceeccccChhHhCCCCCCEEECcCCeeeccCchhHhhccCcCEEECcCCeecc
Confidence            5554433333322  24445555555554442 34444444445555555444444444444444444444444444444


Q ss_pred             ccccccCCCCCCcEEEcccCCCc-ccchhhhccCCcCEEeccCC
Q 037308          238 RLPECLGQLSSPIILNLAKTNVE-RIPESIIQLFVLRYLLLSYS  280 (321)
Q Consensus       238 ~~~~~~~~~~~L~~L~l~~n~l~-~l~~~l~~l~~L~~L~l~~n  280 (321)
                      .+|..+..+++|+.|++++|.++ .+|..+..+++|+.|++++|
T Consensus       299 ~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n  342 (968)
T PLN00113        299 EIPELVIQLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSN  342 (968)
T ss_pred             CCChhHcCCCCCcEEECCCCccCCcCChhHhcCCCCCEEECcCC
Confidence            44444444444444444444444 33344444444444444444

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=99.94  E-value=1.4e-26  Score=234.28  Aligned_cols=261  Identities=22%  Similarity=0.293  Sum_probs=170.5

Q ss_pred             eecCchhhh-ccChhhhcCCCCceEEEEeecCCCCccccceeccCCCCcCcccEEEecCCCCC-CCCCcC-CcCceeEEe
Q 037308           10 LDMSTVKEI-RLNLSTFTKMPKLRFLKFYSSSFNGENKCKVSYLQDPRFAEVKYFHWHGYPLK-SLPSNL-SAEKLVFLK   86 (321)
Q Consensus        10 l~~~~~~~~-~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~l~~~~L~~l~l~~~~l~-~~~~~~-~l~~L~~L~   86 (321)
                      |+++++... .++...+..+++|++|++++|.+++..+..       ..++|++|++++|.+. .+|..+ .+++|++|+
T Consensus        98 L~Ls~n~~~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~~-------~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~  170 (968)
T PLN00113         98 INLSNNQLSGPIPDDIFTTSSSLRYLNLSNNNFTGSIPRG-------SIPNLETLDLSNNMLSGEIPNDIGSFSSLKVLD  170 (968)
T ss_pred             EECCCCccCCcCChHHhccCCCCCEEECcCCccccccCcc-------ccCCCCEEECcCCcccccCChHHhcCCCCCEEE
Confidence            445555432 455555668899999999999876543320       1267777777777664 445444 677777777


Q ss_pred             ccCCccc-ccccCCCCCCChHhHHhhccccccccCCCCCCCCCCCCccEEEccCCCCCcccCccccCcccCcEEecCCCC
Q 037308           87 VPYSDIE-QLWNGEKHYSNLNQIINATCNKLIAKTPNPTLMPHLNKLVILNLRGSKSLKSLPSGIFNLEFLTKLDLSGCS  165 (321)
Q Consensus        87 l~~~~l~-~~~~~~~~l~~L~~~l~l~~~~l~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~l~~l~~L~~L~l~~~~  165 (321)
                      +++|.+. .++..+..+++|+. ++++.|.+.+.+|.  .+..+++|+.|++++|.+.+.+|..++.+++|++|++++|.
T Consensus       171 L~~n~l~~~~p~~~~~l~~L~~-L~L~~n~l~~~~p~--~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~  247 (968)
T PLN00113        171 LGGNVLVGKIPNSLTNLTSLEF-LTLASNQLVGQIPR--ELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNN  247 (968)
T ss_pred             CccCcccccCChhhhhCcCCCe-eeccCCCCcCcCCh--HHcCcCCccEEECcCCccCCcCChhHhcCCCCCEEECcCce
Confidence            7777764 34555666777777 77777776655655  66777777777777777666666666777777777777765


Q ss_pred             Cccccccc--ccCCccEEEeccccccc-cChhhhccCCCCeEecccCcccccccccccCCCCCCEEEecCCCCCCccccc
Q 037308          166 KLKRLLEI--SSGNINWLFLRETAIEE-LPSSIERLLRLGHLDLSDCKRLKSLPSSLFKLKSLGVLNLGGCSNLQRLPEC  242 (321)
Q Consensus       166 ~~~~~~~~--~~~~L~~L~l~~~~i~~-l~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~  242 (321)
                      ..+.+|..  .+++|+.|++++|.+.+ +|..+..+++|++|++++|.+.+.+|..+..+++|+.|++++|.+.+..|..
T Consensus       248 l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~  327 (968)
T PLN00113        248 LTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTGKIPVA  327 (968)
T ss_pred             eccccChhHhCCCCCCEEECcCCeeeccCchhHhhccCcCEEECcCCeeccCCChhHcCCCCCcEEECCCCccCCcCChh
Confidence            54444433  35566677777666654 5555666666777777766666666666666666666666666666666666


Q ss_pred             cCCCCCCcEEEcccCCCc-ccchhhhccCCcCEEeccCC
Q 037308          243 LGQLSSPIILNLAKTNVE-RIPESIIQLFVLRYLLLSYS  280 (321)
Q Consensus       243 ~~~~~~L~~L~l~~n~l~-~l~~~l~~l~~L~~L~l~~n  280 (321)
                      +..+++|+.|++++|.++ .+|..++.+++|+.|++++|
T Consensus       328 ~~~l~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~Ls~n  366 (968)
T PLN00113        328 LTSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTN  366 (968)
T ss_pred             HhcCCCCCEEECcCCCCcCcCChHHhCCCCCcEEECCCC
Confidence            666666666666666665 55666666666666666666

>PLN03210 Resistant to P

Probab=99.94  E-value=1.5e-25  Score=228.43  Aligned_cols=296  Identities=33%  Similarity=0.508  Sum_probs=216.5

Q ss_pred             CCCceEEEEeecCchhhhccChhhhcCCCCceEEEEeecCCCCccccceeccCCCCc--CcccEEEecCCCCCCCCCcCC
Q 037308            1 GTKKIEGICLDMSTVKEIRLNLSTFTKMPKLRFLKFYSSSFNGENKCKVSYLQDPRF--AEVKYFHWHGYPLKSLPSNLS   78 (321)
Q Consensus         1 ~~~~~~~~~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~l~~--~~L~~l~l~~~~l~~~~~~~~   78 (321)
                      |++.|++|.+|++......+...+|.+|++|+.|.+..+.+..........+.++..  .+|+.|.+.+++++.+|..+.
T Consensus       530 g~~~v~~i~l~~~~~~~~~i~~~aF~~m~~L~~L~~~~~~~~~~~~~~~~lp~~~~~lp~~Lr~L~~~~~~l~~lP~~f~  609 (1153)
T PLN03210        530 GTKKVLGITLDIDEIDELHIHENAFKGMRNLLFLKFYTKKWDQKKEVRWHLPEGFDYLPPKLRLLRWDKYPLRCMPSNFR  609 (1153)
T ss_pred             ccceeeEEEeccCccceeeecHHHHhcCccccEEEEecccccccccceeecCcchhhcCcccEEEEecCCCCCCCCCcCC
Confidence            678999999999999888899999999999999999876533322223445566665  679999999999999999999


Q ss_pred             cCceeEEeccCCcccccccCCCCCCChHhHHhhccc-cccccCCCCCCCCCCCCccEEEccCCCCCcccCccccCcccCc
Q 037308           79 AEKLVFLKVPYSDIEQLWNGEKHYSNLNQIINATCN-KLIAKTPNPTLMPHLNKLVILNLRGSKSLKSLPSGIFNLEFLT  157 (321)
Q Consensus        79 l~~L~~L~l~~~~l~~~~~~~~~l~~L~~~l~l~~~-~l~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~l~~l~~L~  157 (321)
                      +.+|+.|+++++.+..++.+...+++|+. ++++.+ .+. .+|   .+..+++|+.|++++|.....+|..+..+++|+
T Consensus       610 ~~~L~~L~L~~s~l~~L~~~~~~l~~Lk~-L~Ls~~~~l~-~ip---~ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~  684 (1153)
T PLN03210        610 PENLVKLQMQGSKLEKLWDGVHSLTGLRN-IDLRGSKNLK-EIP---DLSMATNLETLKLSDCSSLVELPSSIQYLNKLE  684 (1153)
T ss_pred             ccCCcEEECcCccccccccccccCCCCCE-EECCCCCCcC-cCC---ccccCCcccEEEecCCCCccccchhhhccCCCC
Confidence            99999999999999999998889999988 888654 454 665   466677788888877766666676666677777


Q ss_pred             EEecCCCCCccccccc-c---------------------cCCccEEEeccccccccChhh--------------------
Q 037308          158 KLDLSGCSKLKRLLEI-S---------------------SGNINWLFLRETAIEELPSSI--------------------  195 (321)
Q Consensus       158 ~L~l~~~~~~~~~~~~-~---------------------~~~L~~L~l~~~~i~~l~~~~--------------------  195 (321)
                      .|++++|..++.+|.. .                     ..+|+.|++++|.+.++|..+                    
T Consensus       685 ~L~L~~c~~L~~Lp~~i~l~sL~~L~Lsgc~~L~~~p~~~~nL~~L~L~~n~i~~lP~~~~l~~L~~L~l~~~~~~~l~~  764 (1153)
T PLN03210        685 DLDMSRCENLEILPTGINLKSLYRLNLSGCSRLKSFPDISTNISWLDLDETAIEEFPSNLRLENLDELILCEMKSEKLWE  764 (1153)
T ss_pred             EEeCCCCCCcCccCCcCCCCCCCEEeCCCCCCccccccccCCcCeeecCCCccccccccccccccccccccccchhhccc
Confidence            7777666555444432 1                     334555556566655555321                    


Q ss_pred             ----------hccCCCCeEecccCcccccccccccCCCCCCEEEecCCCCCCcccccc--------------------CC
Q 037308          196 ----------ERLLRLGHLDLSDCKRLKSLPSSLFKLKSLGVLNLGGCSNLQRLPECL--------------------GQ  245 (321)
Q Consensus       196 ----------~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~--------------------~~  245 (321)
                                ...++|+.|++++|.....+|..++++++|+.|++++|...+.+|..+                    ..
T Consensus       765 ~~~~l~~~~~~~~~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~~L~sL~~L~Ls~c~~L~~~p~~  844 (1153)
T PLN03210        765 RVQPLTPLMTMLSPSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPTGINLESLESLDLSGCSRLRTFPDI  844 (1153)
T ss_pred             cccccchhhhhccccchheeCCCCCCccccChhhhCCCCCCEEECCCCCCcCeeCCCCCccccCEEECCCCCcccccccc
Confidence                      012356667777766666677777777777777777776555555432                    01


Q ss_pred             CCCCcEEEcccCCCcccchhhhccCCcCEEeccCCCCccccc-Cc---cccccccccccC
Q 037308          246 LSSPIILNLAKTNVERIPESIIQLFVLRYLLLSYSERIQSVS-LP---LARGILEDTQRS  301 (321)
Q Consensus       246 ~~~L~~L~l~~n~l~~l~~~l~~l~~L~~L~l~~n~~l~~~~-~~---~~l~~l~~~~~~  301 (321)
                      .++|+.|++++|.++.+|.++..+++|+.|++.+|+.++.+| .+   +.++.+++.+|.
T Consensus       845 ~~nL~~L~Ls~n~i~~iP~si~~l~~L~~L~L~~C~~L~~l~~~~~~L~~L~~L~l~~C~  904 (1153)
T PLN03210        845 STNISDLNLSRTGIEEVPWWIEKFSNLSFLDMNGCNNLQRVSLNISKLKHLETVDFSDCG  904 (1153)
T ss_pred             ccccCEeECCCCCCccChHHHhcCCCCCEEECCCCCCcCccCcccccccCCCeeecCCCc
Confidence            245667777777788899899999999999999999999988 33   455666777774

syringae 6; Provisional

>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]

Probab=99.92  E-value=2.6e-26  Score=205.93  Aligned_cols=283  Identities=21%  Similarity=0.206  Sum_probs=206.7

Q ss_pred             EeecCchhhhccChhhhcCCCCceEEEEeecCCCCccccceeccCCCCcCcccEEEecCCCCCCCCCc-C-CcCceeEEe
Q 037308            9 CLDMSTVKEIRLNLSTFTKMPKLRFLKFYSSSFNGENKCKVSYLQDPRFAEVKYFHWHGYPLKSLPSN-L-SAEKLVFLK   86 (321)
Q Consensus         9 ~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~l~~~~L~~l~l~~~~l~~~~~~-~-~l~~L~~L~   86 (321)
                      .|++.++.+.......++.++.||.|||+.|.++.     +..+......++++|+|++|.++.+... | .+.+|..|.
T Consensus       129 ~L~L~~N~I~sv~se~L~~l~alrslDLSrN~is~-----i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlk  203 (873)
T KOG4194|consen  129 KLDLRHNLISSVTSEELSALPALRSLDLSRNLISE-----IPKPSFPAKVNIKKLNLASNRITTLETGHFDSLNSLLTLK  203 (873)
T ss_pred             EEeeeccccccccHHHHHhHhhhhhhhhhhchhhc-----ccCCCCCCCCCceEEeeccccccccccccccccchheeee
Confidence            34556666667777888888999999999987441     1222222237888888888888877665 2 566888888


Q ss_pred             ccCCcccccccCC-CCCCChHhHHhhccccccc-----------------------cCCCCCCCCCCCCccEEEccCCCC
Q 037308           87 VPYSDIEQLWNGE-KHYSNLNQIINATCNKLIA-----------------------KTPNPTLMPHLNKLVILNLRGSKS  142 (321)
Q Consensus        87 l~~~~l~~~~~~~-~~l~~L~~~l~l~~~~l~~-----------------------~~~~~~~~~~l~~L~~L~l~~n~~  142 (321)
                      ++.|+++.++... +++++|+. |++..|.|+.                       .+.. +.|.++.++++|+|+.|++
T Consensus       204 LsrNrittLp~r~Fk~L~~L~~-LdLnrN~irive~ltFqgL~Sl~nlklqrN~I~kL~D-G~Fy~l~kme~l~L~~N~l  281 (873)
T KOG4194|consen  204 LSRNRITTLPQRSFKRLPKLES-LDLNRNRIRIVEGLTFQGLPSLQNLKLQRNDISKLDD-GAFYGLEKMEHLNLETNRL  281 (873)
T ss_pred             cccCcccccCHHHhhhcchhhh-hhccccceeeehhhhhcCchhhhhhhhhhcCcccccC-cceeeecccceeecccchh
Confidence            8888888876533 44777777 6666665541                       2221 1455666777777777765


Q ss_pred             CcccCccccCcccCcEEecCCCCCccccccc--ccCCccEEEeccccccccCh-hhhccCCCCeEecccCcccccccccc
Q 037308          143 LKSLPSGIFNLEFLTKLDLSGCSKLKRLLEI--SSGNINWLFLRETAIEELPS-SIERLLRLGHLDLSDCKRLKSLPSSL  219 (321)
Q Consensus       143 ~~~~p~~l~~l~~L~~L~l~~~~~~~~~~~~--~~~~L~~L~l~~~~i~~l~~-~~~~l~~L~~L~l~~n~~~~~~~~~~  219 (321)
                      ...-.+++.++++|++|+++.|.....-+..  ..++|++|++++|.++++++ ++..+..|++|+++.|.+.......|
T Consensus       282 ~~vn~g~lfgLt~L~~L~lS~NaI~rih~d~WsftqkL~~LdLs~N~i~~l~~~sf~~L~~Le~LnLs~Nsi~~l~e~af  361 (873)
T KOG4194|consen  282 QAVNEGWLFGLTSLEQLDLSYNAIQRIHIDSWSFTQKLKELDLSSNRITRLDEGSFRVLSQLEELNLSHNSIDHLAEGAF  361 (873)
T ss_pred             hhhhcccccccchhhhhccchhhhheeecchhhhcccceeEeccccccccCChhHHHHHHHhhhhcccccchHHHHhhHH
Confidence            5555566778888888888887654433322  57789999999999999885 58888899999999988776666678


Q ss_pred             cCCCCCCEEEecCCCCCCcc---ccccCCCCCCcEEEcccCCCcccc-hhhhccCCcCEEeccCCCCccccc----Cccc
Q 037308          220 FKLKSLGVLNLGGCSNLQRL---PECLGQLSSPIILNLAKTNVERIP-ESIIQLFVLRYLLLSYSERIQSVS----LPLA  291 (321)
Q Consensus       220 ~~l~~L~~L~l~~~~~~~~~---~~~~~~~~~L~~L~l~~n~l~~l~-~~l~~l~~L~~L~l~~n~~l~~~~----~~~~  291 (321)
                      .++.+|+.||+++|.+...+   ...|.++++|+.|++.+|+++.+| ..+.++++|+.|++.+| .|..|+    -|..
T Consensus       362 ~~lssL~~LdLr~N~ls~~IEDaa~~f~gl~~LrkL~l~gNqlk~I~krAfsgl~~LE~LdL~~N-aiaSIq~nAFe~m~  440 (873)
T KOG4194|consen  362 VGLSSLHKLDLRSNELSWCIEDAAVAFNGLPSLRKLRLTGNQLKSIPKRAFSGLEALEHLDLGDN-AIASIQPNAFEPME  440 (873)
T ss_pred             HHhhhhhhhcCcCCeEEEEEecchhhhccchhhhheeecCceeeecchhhhccCcccceecCCCC-cceeecccccccch
Confidence            89999999999998775433   346778999999999999999999 57899999999999999 888876    4445


Q ss_pred             cccccccc
Q 037308          292 RGILEDTQ  299 (321)
Q Consensus       292 l~~l~~~~  299 (321)
                      +++|-+..
T Consensus       441 Lk~Lv~nS  448 (873)
T KOG4194|consen  441 LKELVMNS  448 (873)
T ss_pred             hhhhhhcc
Confidence            55554443

>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]

Probab=99.91  E-value=5.5e-26  Score=203.84  Aligned_cols=282  Identities=18%  Similarity=0.127  Sum_probs=179.4

Q ss_pred             ceEEEEeecCchhhhccChhhhcC-CCCceEEEEeecCCCCccccceeccCCCCc-CcccEEEecCCCCCCCCCcC--Cc
Q 037308            4 KIEGICLDMSTVKEIRLNLSTFTK-MPKLRFLKFYSSSFNGENKCKVSYLQDPRF-AEVKYFHWHGYPLKSLPSNL--SA   79 (321)
Q Consensus         4 ~~~~~~l~~~~~~~~~~~~~~l~~-l~~L~~L~l~~n~~~~~~~~~~~~~~~l~~-~~L~~l~l~~~~l~~~~~~~--~l   79 (321)
                      +++++.++  +++...+  +.++. ..+|+.|+|.+|.++      ....+.++. +-|+.+||+.|.+..++...  .-
T Consensus       103 nLq~v~l~--~N~Lt~I--P~f~~~sghl~~L~L~~N~I~------sv~se~L~~l~alrslDLSrN~is~i~~~sfp~~  172 (873)
T KOG4194|consen  103 NLQEVNLN--KNELTRI--PRFGHESGHLEKLDLRHNLIS------SVTSEELSALPALRSLDLSRNLISEIPKPSFPAK  172 (873)
T ss_pred             cceeeeec--cchhhhc--ccccccccceeEEeeeccccc------cccHHHHHhHhhhhhhhhhhchhhcccCCCCCCC
Confidence            44455443  3333333  33444 456999999999854      344456777 99999999999999888764  45


Q ss_pred             CceeEEeccCCccccccc-CCCCCCChHhHHhhccccccccCCCCCCCCCCCCccEEEccCCCCCcccCccccCcccCcE
Q 037308           80 EKLVFLKVPYSDIEQLWN-GEKHYSNLNQIINATCNKLIAKTPNPTLMPHLNKLVILNLRGSKSLKSLPSGIFNLEFLTK  158 (321)
Q Consensus        80 ~~L~~L~l~~~~l~~~~~-~~~~l~~L~~~l~l~~~~l~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~l~~l~~L~~  158 (321)
                      .++++|++++|+|+.+.. .+..+.+|.. +.++.|+++ .+|. ..|..+++|++|+|..|++.-.---.|+++++|+.
T Consensus       173 ~ni~~L~La~N~It~l~~~~F~~lnsL~t-lkLsrNrit-tLp~-r~Fk~L~~L~~LdLnrN~irive~ltFqgL~Sl~n  249 (873)
T KOG4194|consen  173 VNIKKLNLASNRITTLETGHFDSLNSLLT-LKLSRNRIT-TLPQ-RSFKRLPKLESLDLNRNRIRIVEGLTFQGLPSLQN  249 (873)
T ss_pred             CCceEEeeccccccccccccccccchhee-eecccCccc-ccCH-HHhhhcchhhhhhccccceeeehhhhhcCchhhhh
Confidence            799999999999999865 4456666777 888999999 8884 35777999999999999843322334667777777


Q ss_pred             EecCCCCCcc--cccccccCCccEEEeccccccccC-hhhhcc------------------------CCCCeEecccCcc
Q 037308          159 LDLSGCSKLK--RLLEISSGNINWLFLRETAIEELP-SSIERL------------------------LRLGHLDLSDCKR  211 (321)
Q Consensus       159 L~l~~~~~~~--~~~~~~~~~L~~L~l~~~~i~~l~-~~~~~l------------------------~~L~~L~l~~n~~  211 (321)
                      |.+.+|....  .-....+.++++|++..|.++.+. .|+.++                        ++|+.|+++.|.+
T Consensus       250 lklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~NaI~rih~d~WsftqkL~~LdLs~N~i  329 (873)
T KOG4194|consen  250 LKLQRNDISKLDDGAFYGLEKMEHLNLETNRLQAVNEGWLFGLTSLEQLDLSYNAIQRIHIDSWSFTQKLKELDLSSNRI  329 (873)
T ss_pred             hhhhhcCcccccCcceeeecccceeecccchhhhhhcccccccchhhhhccchhhhheeecchhhhcccceeEecccccc
Confidence            7666643211  111112444445555444444443 234444                        4455555555444


Q ss_pred             cccccccccCCCCCCEEEecCCCCCCccccccCCCCCCcEEEcccCCCc----ccchhhhccCCcCEEeccCCCCccccc
Q 037308          212 LKSLPSSLFKLKSLGVLNLGGCSNLQRLPECLGQLSSPIILNLAKTNVE----RIPESIIQLFVLRYLLLSYSERIQSVS  287 (321)
Q Consensus       212 ~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~----~l~~~l~~l~~L~~L~l~~n~~l~~~~  287 (321)
                      ....+..+..+..|+.|.+++|.+...-..+|.++++|+.||+.+|.+.    +-...+..+++|++|.+.|| +++.|+
T Consensus       330 ~~l~~~sf~~L~~Le~LnLs~Nsi~~l~e~af~~lssL~~LdLr~N~ls~~IEDaa~~f~gl~~LrkL~l~gN-qlk~I~  408 (873)
T KOG4194|consen  330 TRLDEGSFRVLSQLEELNLSHNSIDHLAEGAFVGLSSLHKLDLRSNELSWCIEDAAVAFNGLPSLRKLRLTGN-QLKSIP  408 (873)
T ss_pred             ccCChhHHHHHHHhhhhcccccchHHHHhhHHHHhhhhhhhcCcCCeEEEEEecchhhhccchhhhheeecCc-eeeecc
Confidence            4433344444445555555554443333345667777777777777765    33345667888889999998 888888


Q ss_pred             -----Cccccccccccc
Q 037308          288 -----LPLARGILEDTQ  299 (321)
Q Consensus       288 -----~~~~l~~l~~~~  299 (321)
                           -..++++|+..+
T Consensus       409 krAfsgl~~LE~LdL~~  425 (873)
T KOG4194|consen  409 KRAFSGLEALEHLDLGD  425 (873)
T ss_pred             hhhhccCcccceecCCC
Confidence                 334555555444

>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]

Probab=99.86  E-value=6.6e-24  Score=192.18  Aligned_cols=242  Identities=21%  Similarity=0.259  Sum_probs=159.8

Q ss_pred             cCCCCc-CcccEEEecCCCCCCCCCcC-CcCceeEEeccCCcccccccCC-CCCCChHhHHhhccccccccCCCCCCCCC
Q 037308           52 LQDPRF-AEVKYFHWHGYPLKSLPSNL-SAEKLVFLKVPYSDIEQLWNGE-KHYSNLNQIINATCNKLIAKTPNPTLMPH  128 (321)
Q Consensus        52 ~~~l~~-~~L~~l~l~~~~l~~~~~~~-~l~~L~~L~l~~~~l~~~~~~~-~~l~~L~~~l~l~~~~l~~~~~~~~~~~~  128 (321)
                      |..+-. ..|+.+++++|.++.+|... ...++-.|++|+|.|.++|..+ .++..|.. ++++.|.+. .+|+  ....
T Consensus        96 P~diF~l~dLt~lDLShNqL~EvP~~LE~AKn~iVLNLS~N~IetIPn~lfinLtDLLf-LDLS~NrLe-~LPP--Q~RR  171 (1255)
T KOG0444|consen   96 PTDIFRLKDLTILDLSHNQLREVPTNLEYAKNSIVLNLSYNNIETIPNSLFINLTDLLF-LDLSNNRLE-MLPP--QIRR  171 (1255)
T ss_pred             CchhcccccceeeecchhhhhhcchhhhhhcCcEEEEcccCccccCCchHHHhhHhHhh-hccccchhh-hcCH--HHHH
Confidence            333333 77777777777777777766 6777777777777777776543 35555666 777778777 7776  7777


Q ss_pred             CCCccEEEccCCCCCcccCccccCcccCcEEecCCCCC-ccccccc--ccCCccEEEeccccccccChhhhccCCCCeEe
Q 037308          129 LNKLVILNLRGSKSLKSLPSGIFNLEFLTKLDLSGCSK-LKRLLEI--SSGNINWLFLRETAIEELPSSIERLLRLGHLD  205 (321)
Q Consensus       129 l~~L~~L~l~~n~~~~~~p~~l~~l~~L~~L~l~~~~~-~~~~~~~--~~~~L~~L~l~~~~i~~l~~~~~~l~~L~~L~  205 (321)
                      +..|+.|++++|.+...--.-+..+++|+.|.+++... ...+|..  .+.+|..+|++.|.+..+|+.+-.+++|++|+
T Consensus       172 L~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N~Lp~vPecly~l~~LrrLN  251 (1255)
T KOG0444|consen  172 LSMLQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSENNLPIVPECLYKLRNLRRLN  251 (1255)
T ss_pred             HhhhhhhhcCCChhhHHHHhcCccchhhhhhhcccccchhhcCCCchhhhhhhhhccccccCCCcchHHHhhhhhhheec
Confidence            77788888887764221111133456666666665322 2244443  46678888888888888888888888888888


Q ss_pred             cccCcccccccccccCCCCCCEEEecCCCC-----------------------C-CccccccCCCCCCcEEEcccCCCcc
Q 037308          206 LSDCKRLKSLPSSLFKLKSLGVLNLGGCSN-----------------------L-QRLPECLGQLSSPIILNLAKTNVER  261 (321)
Q Consensus       206 l~~n~~~~~~~~~~~~l~~L~~L~l~~~~~-----------------------~-~~~~~~~~~~~~L~~L~l~~n~l~~  261 (321)
                      +++|.++.. ....+.+.+|+.|++++|++                       . ..+|.+++.+.+|+.+..++|.+.-
T Consensus       252 LS~N~iteL-~~~~~~W~~lEtLNlSrNQLt~LP~avcKL~kL~kLy~n~NkL~FeGiPSGIGKL~~Levf~aanN~LEl  330 (1255)
T KOG0444|consen  252 LSGNKITEL-NMTEGEWENLETLNLSRNQLTVLPDAVCKLTKLTKLYANNNKLTFEGIPSGIGKLIQLEVFHAANNKLEL  330 (1255)
T ss_pred             cCcCceeee-eccHHHHhhhhhhccccchhccchHHHhhhHHHHHHHhccCcccccCCccchhhhhhhHHHHhhcccccc
Confidence            888876532 22234445555555555433                       2 2355666666666666667777777


Q ss_pred             cchhhhccCCcCEEeccCCCCccccc----Cccccccccccc
Q 037308          262 IPESIIQLFVLRYLLLSYSERIQSVS----LPLARGILEDTQ  299 (321)
Q Consensus       262 l~~~l~~l~~L~~L~l~~n~~l~~~~----~~~~l~~l~~~~  299 (321)
                      +|+.+++|+.|++|.++.| ++.++|    +.+.+..||+..
T Consensus       331 VPEglcRC~kL~kL~L~~N-rLiTLPeaIHlL~~l~vLDlre  371 (1255)
T KOG0444|consen  331 VPEGLCRCVKLQKLKLDHN-RLITLPEAIHLLPDLKVLDLRE  371 (1255)
T ss_pred             CchhhhhhHHHHHhccccc-ceeechhhhhhcCCcceeeccC
Confidence            8888888888888888888 777777    556677776665

>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]

Probab=99.85  E-value=1.2e-22  Score=184.10  Aligned_cols=251  Identities=23%  Similarity=0.333  Sum_probs=209.0

Q ss_pred             CCCCceEEEEeecCCCCccccceeccCCCCc-CcccEEEecCCCCCCCCCcC-CcCceeEEeccCCcccccccCCCCCCC
Q 037308           27 KMPKLRFLKFYSSSFNGENKCKVSYLQDPRF-AEVKYFHWHGYPLKSLPSNL-SAEKLVFLKVPYSDIEQLWNGEKHYSN  104 (321)
Q Consensus        27 ~l~~L~~L~l~~n~~~~~~~~~~~~~~~l~~-~~L~~l~l~~~~l~~~~~~~-~l~~L~~L~l~~~~l~~~~~~~~~l~~  104 (321)
                      -+|-.+-.|+++|.|+|.     ..|..+.. ..++.|.+....+..+|... .+.+|++|.+++|++.++...+..+|.
T Consensus         5 VLpFVrGvDfsgNDFsg~-----~FP~~v~qMt~~~WLkLnrt~L~~vPeEL~~lqkLEHLs~~HN~L~~vhGELs~Lp~   79 (1255)
T KOG0444|consen    5 VLPFVRGVDFSGNDFSGD-----RFPHDVEQMTQMTWLKLNRTKLEQVPEELSRLQKLEHLSMAHNQLISVHGELSDLPR   79 (1255)
T ss_pred             ccceeecccccCCcCCCC-----cCchhHHHhhheeEEEechhhhhhChHHHHHHhhhhhhhhhhhhhHhhhhhhccchh
Confidence            356678899999987753     23344454 89999999999999999987 899999999999999999999999999


Q ss_pred             hHhHHhhccccccccCCCCCCCCCCCCccEEEccCCCCCcccCccccCcccCcEEecCCCCCccccccc---ccCCccEE
Q 037308          105 LNQIINATCNKLIAKTPNPTLMPHLNKLVILNLRGSKSLKSLPSGIFNLEFLTKLDLSGCSKLKRLLEI---SSGNINWL  181 (321)
Q Consensus       105 L~~~l~l~~~~l~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~l~~l~~L~~L~l~~~~~~~~~~~~---~~~~L~~L  181 (321)
                      |+. +.+..|.+. .-..|..+.++..|..||+|.|+ +.+.|..+..-+.+-.|+++.|. +..+|..   .+..|-.|
T Consensus        80 LRs-v~~R~N~LK-nsGiP~diF~l~dLt~lDLShNq-L~EvP~~LE~AKn~iVLNLS~N~-IetIPn~lfinLtDLLfL  155 (1255)
T KOG0444|consen   80 LRS-VIVRDNNLK-NSGIPTDIFRLKDLTILDLSHNQ-LREVPTNLEYAKNSIVLNLSYNN-IETIPNSLFINLTDLLFL  155 (1255)
T ss_pred             hHH-Hhhhccccc-cCCCCchhcccccceeeecchhh-hhhcchhhhhhcCcEEEEcccCc-cccCCchHHHhhHhHhhh
Confidence            999 999888887 32223378899999999999998 77889889899999999999965 5556644   46667789


Q ss_pred             EeccccccccChhhhccCCCCeEecccCcccccccccccCCCCCCEEEecCCCCC-CccccccCCCCCCcEEEcccCCCc
Q 037308          182 FLRETAIEELPSSIERLLRLGHLDLSDCKRLKSLPSSLFKLKSLGVLNLGGCSNL-QRLPECLGQLSSPIILNLAKTNVE  260 (321)
Q Consensus       182 ~l~~~~i~~l~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~~~~~-~~~~~~~~~~~~L~~L~l~~n~l~  260 (321)
                      |+++|++..+|+.+..+..|+.|++++|.+...--..+..+.+|+.|.+++.+.+ ..+|.++..+.+|+.+|++.|.+.
T Consensus       156 DLS~NrLe~LPPQ~RRL~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N~Lp  235 (1255)
T KOG0444|consen  156 DLSNNRLEMLPPQIRRLSMLQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSENNLP  235 (1255)
T ss_pred             ccccchhhhcCHHHHHHhhhhhhhcCCChhhHHHHhcCccchhhhhhhcccccchhhcCCCchhhhhhhhhccccccCCC
Confidence            9999999999999999999999999998855433345667788888888876443 568889999999999999999999


Q ss_pred             ccchhhhccCCcCEEeccCCCCccccc
Q 037308          261 RIPESIIQLFVLRYLLLSYSERIQSVS  287 (321)
Q Consensus       261 ~l~~~l~~l~~L~~L~l~~n~~l~~~~  287 (321)
                      .+|+++..+++|+.|++++| .|+++.
T Consensus       236 ~vPecly~l~~LrrLNLS~N-~iteL~  261 (1255)
T KOG0444|consen  236 IVPECLYKLRNLRRLNLSGN-KITELN  261 (1255)
T ss_pred             cchHHHhhhhhhheeccCcC-ceeeee
Confidence            99999999999999999999 776665

>KOG0472 consensus Leucine-rich repeat protein [Function unknown]

Probab=99.82  E-value=1.6e-22  Score=174.47  Aligned_cols=86  Identities=28%  Similarity=0.314  Sum_probs=62.3

Q ss_pred             hhccCCCCeEecccCcccccccccccCCCCCCEEEecCCCC-----------------------CCccccccCCCCCCcE
Q 037308          195 IERLLRLGHLDLSDCKRLKSLPSSLFKLKSLGVLNLGGCSN-----------------------LQRLPECLGQLSSPII  251 (321)
Q Consensus       195 ~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~~~~-----------------------~~~~~~~~~~~~~L~~  251 (321)
                      ++.+++|..|++++|. ..++|..++.+..|+.|+++.|.+                       ...-++.+.+|.+|.+
T Consensus       431 l~~l~kLt~L~L~NN~-Ln~LP~e~~~lv~Lq~LnlS~NrFr~lP~~~y~lq~lEtllas~nqi~~vd~~~l~nm~nL~t  509 (565)
T KOG0472|consen  431 LSQLQKLTFLDLSNNL-LNDLPEEMGSLVRLQTLNLSFNRFRMLPECLYELQTLETLLASNNQIGSVDPSGLKNMRNLTT  509 (565)
T ss_pred             HHhhhcceeeecccch-hhhcchhhhhhhhhheecccccccccchHHHhhHHHHHHHHhccccccccChHHhhhhhhcce
Confidence            4445666666666533 555666666666667776666533                       2222345788899999


Q ss_pred             EEcccCCCcccchhhhccCCcCEEeccCCC
Q 037308          252 LNLAKTNVERIPESIIQLFVLRYLLLSYSE  281 (321)
Q Consensus       252 L~l~~n~l~~l~~~l~~l~~L~~L~l~~n~  281 (321)
                      ||+.+|.+..+|+.+++|.+|++|.++||+
T Consensus       510 LDL~nNdlq~IPp~LgnmtnL~hLeL~gNp  539 (565)
T KOG0472|consen  510 LDLQNNDLQQIPPILGNMTNLRHLELDGNP  539 (565)
T ss_pred             eccCCCchhhCChhhccccceeEEEecCCc
Confidence            999999999999999999999999999993

>KOG0472 consensus Leucine-rich repeat protein [Function unknown]

Probab=99.76  E-value=3.4e-21  Score=166.36  Aligned_cols=247  Identities=24%  Similarity=0.321  Sum_probs=137.8

Q ss_pred             hhhcCCCCceEEEEeecCCCCccccceeccCCCCc-CcccEEEecCCCCCCCCCcC-CcCceeEEeccCCcccccccCCC
Q 037308           23 STFTKMPKLRFLKFYSSSFNGENKCKVSYLQDPRF-AEVKYFHWHGYPLKSLPSNL-SAEKLVFLKVPYSDIEQLWNGEK  100 (321)
Q Consensus        23 ~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~l~~-~~L~~l~l~~~~l~~~~~~~-~l~~L~~L~l~~~~l~~~~~~~~  100 (321)
                      +.+..+..+.+|++++|+.       ...+++++. ..++.++.+++.+..+|..+ .+..+..++.++|.+..++++++
T Consensus        62 ~dl~nL~~l~vl~~~~n~l-------~~lp~aig~l~~l~~l~vs~n~ls~lp~~i~s~~~l~~l~~s~n~~~el~~~i~  134 (565)
T KOG0472|consen   62 EDLKNLACLTVLNVHDNKL-------SQLPAAIGELEALKSLNVSHNKLSELPEQIGSLISLVKLDCSSNELKELPDSIG  134 (565)
T ss_pred             HhhhcccceeEEEeccchh-------hhCCHHHHHHHHHHHhhcccchHhhccHHHhhhhhhhhhhccccceeecCchHH
Confidence            3445555566666665542       234444444 55555666666666555554 55666666666666666655555


Q ss_pred             CCCChHhHHhhccccccccCCCCCCCCCCCCccEEEccCCCCCcccCccccCcccCcEEecCCCCCccccccc--ccCCc
Q 037308          101 HYSNLNQIINATCNKLIAKTPNPTLMPHLNKLVILNLRGSKSLKSLPSGIFNLEFLTKLDLSGCSKLKRLLEI--SSGNI  178 (321)
Q Consensus       101 ~l~~L~~~l~l~~~~l~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~l~~l~~L~~L~l~~~~~~~~~~~~--~~~~L  178 (321)
                      .+..+.. ++...|++. ..|+  .+..+.++..|++.+|. ....|+..-++++|++++.-.|. ++.+|+.  .+.+|
T Consensus       135 ~~~~l~d-l~~~~N~i~-slp~--~~~~~~~l~~l~~~~n~-l~~l~~~~i~m~~L~~ld~~~N~-L~tlP~~lg~l~~L  208 (565)
T KOG0472|consen  135 RLLDLED-LDATNNQIS-SLPE--DMVNLSKLSKLDLEGNK-LKALPENHIAMKRLKHLDCNSNL-LETLPPELGGLESL  208 (565)
T ss_pred             HHhhhhh-hhccccccc-cCch--HHHHHHHHHHhhccccc-hhhCCHHHHHHHHHHhcccchhh-hhcCChhhcchhhh
Confidence            6555555 555566665 5554  55556666666666655 33344333346666666655532 3444433  34455


Q ss_pred             cEEEeccccccccChhhhccCCCCeEecccCcccccccccccCCCCCCEEEecCCCCCCccccccCCCCCCcEEEcccCC
Q 037308          179 NWLFLRETAIEELPSSIERLLRLGHLDLSDCKRLKSLPSSLFKLKSLGVLNLGGCSNLQRLPECLGQLSSPIILNLAKTN  258 (321)
Q Consensus       179 ~~L~l~~~~i~~l~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~  258 (321)
                      .-|++..|.+..+| .|..+..|.+|.++.|.+.....+...+++++..||+.+|+ ..+.|+.++.+.+|.+||+++|.
T Consensus       209 ~~LyL~~Nki~~lP-ef~gcs~L~Elh~g~N~i~~lpae~~~~L~~l~vLDLRdNk-lke~Pde~clLrsL~rLDlSNN~  286 (565)
T KOG0472|consen  209 ELLYLRRNKIRFLP-EFPGCSLLKELHVGENQIEMLPAEHLKHLNSLLVLDLRDNK-LKEVPDEICLLRSLERLDLSNND  286 (565)
T ss_pred             HHHHhhhcccccCC-CCCccHHHHHHHhcccHHHhhHHHHhcccccceeeeccccc-cccCchHHHHhhhhhhhcccCCc
Confidence            55556666666666 35555556666666555332222333366666666666644 34455666666666666666666


Q ss_pred             CcccchhhhccCCcCEEeccCCCCcccc
Q 037308          259 VERIPESIIQLFVLRYLLLSYSERIQSV  286 (321)
Q Consensus       259 l~~l~~~l~~l~~L~~L~l~~n~~l~~~  286 (321)
                      ++.+|..++++ .|+.|-+.|| -+++|
T Consensus       287 is~Lp~sLgnl-hL~~L~leGN-PlrTi  312 (565)
T KOG0472|consen  287 ISSLPYSLGNL-HLKFLALEGN-PLRTI  312 (565)
T ss_pred             cccCCcccccc-eeeehhhcCC-chHHH
Confidence            66666666666 6666666666 34443

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=99.75  E-value=1.6e-17  Score=159.90  Aligned_cols=219  Identities=21%  Similarity=0.180  Sum_probs=137.1

Q ss_pred             CCceEEEEeecCCCCccccceeccCCCCcCcccEEEecCCCCCCCCCcCCcCceeEEeccCCcccccccCCCCCCChHhH
Q 037308           29 PKLRFLKFYSSSFNGENKCKVSYLQDPRFAEVKYFHWHGYPLKSLPSNLSAEKLVFLKVPYSDIEQLWNGEKHYSNLNQI  108 (321)
Q Consensus        29 ~~L~~L~l~~n~~~~~~~~~~~~~~~l~~~~L~~l~l~~~~l~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~l~~L~~~  108 (321)
                      ++|+.|++.+|.++.       .+..  .++|++|++++|.++.+|..  .++|+.|++++|.++.++...   .+|.. 
T Consensus       222 ~~L~~L~L~~N~Lt~-------LP~l--p~~Lk~LdLs~N~LtsLP~l--p~sL~~L~Ls~N~L~~Lp~lp---~~L~~-  286 (788)
T PRK15387        222 AHITTLVIPDNNLTS-------LPAL--PPELRTLEVSGNQLTSLPVL--PPGLLELSIFSNPLTHLPALP---SGLCK-  286 (788)
T ss_pred             cCCCEEEccCCcCCC-------CCCC--CCCCcEEEecCCccCcccCc--ccccceeeccCCchhhhhhch---hhcCE-
Confidence            367888888876542       1110  16788888888877777653  456777777777766654321   23444 


Q ss_pred             HhhccccccccCCCCCCCCCCCCccEEEccCCCCCcccCcccc-----------------CcccCcEEecCCCCCccccc
Q 037308          109 INATCNKLIAKTPNPTLMPHLNKLVILNLRGSKSLKSLPSGIF-----------------NLEFLTKLDLSGCSKLKRLL  171 (321)
Q Consensus       109 l~l~~~~l~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~l~-----------------~l~~L~~L~l~~~~~~~~~~  171 (321)
                      ++++.|.++ .+|.     ..++|+.|++++|.+. .+|....                 ...+|+.|++++|. +..+|
T Consensus       287 L~Ls~N~Lt-~LP~-----~p~~L~~LdLS~N~L~-~Lp~lp~~L~~L~Ls~N~L~~LP~lp~~Lq~LdLS~N~-Ls~LP  358 (788)
T PRK15387        287 LWIFGNQLT-SLPV-----LPPGLQELSVSDNQLA-SLPALPSELCKLWAYNNQLTSLPTLPSGLQELSVSDNQ-LASLP  358 (788)
T ss_pred             EECcCCccc-cccc-----cccccceeECCCCccc-cCCCCcccccccccccCccccccccccccceEecCCCc-cCCCC
Confidence            555556555 4442     1245666666665532 2232110                 11356666666643 33444


Q ss_pred             ccccCCccEEEeccccccccChhhhccCCCCeEecccCcccccccccccCCCCCCEEEecCCCCCCccccccCCCCCCcE
Q 037308          172 EISSGNINWLFLRETAIEELPSSIERLLRLGHLDLSDCKRLKSLPSSLFKLKSLGVLNLGGCSNLQRLPECLGQLSSPII  251 (321)
Q Consensus       172 ~~~~~~L~~L~l~~~~i~~l~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~  251 (321)
                      .. +.+|+.|++++|.++.+|..   ..+|+.|++++|.+.+ +|..   .++|+.|++++|.+. .+|..   ..+|+.
T Consensus       359 ~l-p~~L~~L~Ls~N~L~~LP~l---~~~L~~LdLs~N~Lt~-LP~l---~s~L~~LdLS~N~Ls-sIP~l---~~~L~~  426 (788)
T PRK15387        359 TL-PSELYKLWAYNNRLTSLPAL---PSGLKELIVSGNRLTS-LPVL---PSELKELMVSGNRLT-SLPML---PSGLLS  426 (788)
T ss_pred             CC-CcccceehhhccccccCccc---ccccceEEecCCcccC-CCCc---ccCCCEEEccCCcCC-CCCcc---hhhhhh
Confidence            43 55666666666666666642   2467888888877654 4432   357888888887764 35543   346888


Q ss_pred             EEcccCCCcccchhhhccCCcCEEeccCCCC
Q 037308          252 LNLAKTNVERIPESIIQLFVLRYLLLSYSER  282 (321)
Q Consensus       252 L~l~~n~l~~l~~~l~~l~~L~~L~l~~n~~  282 (321)
                      |++++|+++.+|..+..+++|+.|++++|+.
T Consensus       427 L~Ls~NqLt~LP~sl~~L~~L~~LdLs~N~L  457 (788)
T PRK15387        427 LSVYRNQLTRLPESLIHLSSETTVNLEGNPL  457 (788)
T ss_pred             hhhccCcccccChHHhhccCCCeEECCCCCC
Confidence            9999999999998899999999999999943

>PLN03210 Resistant to P

Probab=99.75  E-value=4.1e-17  Score=166.90  Aligned_cols=237  Identities=27%  Similarity=0.310  Sum_probs=169.2

Q ss_pred             CCc-CcccEEEecCCCC-------CCCCCcC-C-cCceeEEeccCCcccccccCCCCCCChHhHHhhccccccccCCCCC
Q 037308           55 PRF-AEVKYFHWHGYPL-------KSLPSNL-S-AEKLVFLKVPYSDIEQLWNGEKHYSNLNQIINATCNKLIAKTPNPT  124 (321)
Q Consensus        55 l~~-~~L~~l~l~~~~l-------~~~~~~~-~-l~~L~~L~l~~~~l~~~~~~~~~l~~L~~~l~l~~~~l~~~~~~~~  124 (321)
                      +.. .+|++|.+..+..       ..+|..+ . ..+|+.|++.++.++.++..+ ...+|.+ +++..+.+. .++.  
T Consensus       554 F~~m~~L~~L~~~~~~~~~~~~~~~~lp~~~~~lp~~Lr~L~~~~~~l~~lP~~f-~~~~L~~-L~L~~s~l~-~L~~--  628 (1153)
T PLN03210        554 FKGMRNLLFLKFYTKKWDQKKEVRWHLPEGFDYLPPKLRLLRWDKYPLRCMPSNF-RPENLVK-LQMQGSKLE-KLWD--  628 (1153)
T ss_pred             HhcCccccEEEEecccccccccceeecCcchhhcCcccEEEEecCCCCCCCCCcC-CccCCcE-EECcCcccc-cccc--
Confidence            344 8899998865532       1345554 3 457999999999999988765 5688988 999999998 7876  


Q ss_pred             CCCCCCCccEEEccCCCCCcccCccccCcccCcEEecCCCCCccccccc--ccCCccEEEeccc-cccccChhhhccCCC
Q 037308          125 LMPHLNKLVILNLRGSKSLKSLPSGIFNLEFLTKLDLSGCSKLKRLLEI--SSGNINWLFLRET-AIEELPSSIERLLRL  201 (321)
Q Consensus       125 ~~~~l~~L~~L~l~~n~~~~~~p~~l~~l~~L~~L~l~~~~~~~~~~~~--~~~~L~~L~l~~~-~i~~l~~~~~~l~~L  201 (321)
                      .+..+++|+.|+++++...+.+|. ++.+++|+.|++++|..+..+|..  .+.+|+.|++++| .++.+|..+ ++++|
T Consensus       629 ~~~~l~~Lk~L~Ls~~~~l~~ip~-ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~i-~l~sL  706 (1153)
T PLN03210        629 GVHSLTGLRNIDLRGSKNLKEIPD-LSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTGI-NLKSL  706 (1153)
T ss_pred             ccccCCCCCEEECCCCCCcCcCCc-cccCCcccEEEecCCCCccccchhhhccCCCCEEeCCCCCCcCccCCcC-CCCCC
Confidence            788899999999999876778886 888999999999999888887765  5789999999886 566777654 56777


Q ss_pred             CeEecccCcccccccccc--------------------------------------------------cCCCCCCEEEec
Q 037308          202 GHLDLSDCKRLKSLPSSL--------------------------------------------------FKLKSLGVLNLG  231 (321)
Q Consensus       202 ~~L~l~~n~~~~~~~~~~--------------------------------------------------~~l~~L~~L~l~  231 (321)
                      +.|++++|.....+|...                                                  ..+++|+.|+++
T Consensus       707 ~~L~Lsgc~~L~~~p~~~~nL~~L~L~~n~i~~lP~~~~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~sL~~L~Ls  786 (1153)
T PLN03210        707 YRLNLSGCSRLKSFPDISTNISWLDLDETAIEEFPSNLRLENLDELILCEMKSEKLWERVQPLTPLMTMLSPSLTRLFLS  786 (1153)
T ss_pred             CEEeCCCCCCccccccccCCcCeeecCCCccccccccccccccccccccccchhhccccccccchhhhhccccchheeCC
Confidence            777777765443333210                                                  012355666666


Q ss_pred             CCCCCCccccccCCCCCCcEEEcccC-CCcccchhhhccCCcCEEeccCCCCccccc-Cccccccccccc
Q 037308          232 GCSNLQRLPECLGQLSSPIILNLAKT-NVERIPESIIQLFVLRYLLLSYSERIQSVS-LPLARGILEDTQ  299 (321)
Q Consensus       232 ~~~~~~~~~~~~~~~~~L~~L~l~~n-~l~~l~~~l~~l~~L~~L~l~~n~~l~~~~-~~~~l~~l~~~~  299 (321)
                      +|.....+|..++.+++|+.|++++| .++.+|..+ .+++|++|++++|..++.+| .+.+++.|++.+
T Consensus       787 ~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~-~L~sL~~L~Ls~c~~L~~~p~~~~nL~~L~Ls~  855 (1153)
T PLN03210        787 DIPSLVELPSSIQNLHKLEHLEIENCINLETLPTGI-NLESLESLDLSGCSRLRTFPDISTNISDLNLSR  855 (1153)
T ss_pred             CCCCccccChhhhCCCCCCEEECCCCCCcCeeCCCC-CccccCEEECCCCCccccccccccccCEeECCC
Confidence            66666666666777777777777665 455666544 56667777777776666665 555555555444

syringae 6; Provisional

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=99.73  E-value=1.1e-17  Score=161.63  Aligned_cols=227  Identities=20%  Similarity=0.264  Sum_probs=159.7

Q ss_pred             CCceEEEEeecCCCCccccceeccCCCCcCcccEEEecCCCCCCCCCcCCcCceeEEeccCCcccccccCCCCCCChHhH
Q 037308           29 PKLRFLKFYSSSFNGENKCKVSYLQDPRFAEVKYFHWHGYPLKSLPSNLSAEKLVFLKVPYSDIEQLWNGEKHYSNLNQI  108 (321)
Q Consensus        29 ~~L~~L~l~~n~~~~~~~~~~~~~~~l~~~~L~~l~l~~~~l~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~l~~L~~~  108 (321)
                      .+...|++.++.++.       .|..+ .++|+.|++++|.+..+|..+. ++|++|++++|.++.++..+.  +.|+. 
T Consensus       178 ~~~~~L~L~~~~Lts-------LP~~I-p~~L~~L~Ls~N~LtsLP~~l~-~nL~~L~Ls~N~LtsLP~~l~--~~L~~-  245 (754)
T PRK15370        178 NNKTELRLKILGLTT-------IPACI-PEQITTLILDNNELKSLPENLQ-GNIKTLYANSNQLTSIPATLP--DTIQE-  245 (754)
T ss_pred             cCceEEEeCCCCcCc-------CCccc-ccCCcEEEecCCCCCcCChhhc-cCCCEEECCCCccccCChhhh--ccccE-
Confidence            356778887765441       11111 1578888888888888876543 578888888888887765432  35777 


Q ss_pred             HhhccccccccCCCCCCCCCCCCccEEEccCCCCCcccCccccCcccCcEEecCCCCCcccccccccCCccEEEeccccc
Q 037308          109 INATCNKLIAKTPNPTLMPHLNKLVILNLRGSKSLKSLPSGIFNLEFLTKLDLSGCSKLKRLLEISSGNINWLFLRETAI  188 (321)
Q Consensus       109 l~l~~~~l~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~i  188 (321)
                      +++++|.+. .+|.  .+.  .+|+.|++++|.+ ..+|..+.  ++|+.|++++|. ++.+|...+++|+.|++++|.+
T Consensus       246 L~Ls~N~L~-~LP~--~l~--s~L~~L~Ls~N~L-~~LP~~l~--~sL~~L~Ls~N~-Lt~LP~~lp~sL~~L~Ls~N~L  316 (754)
T PRK15370        246 MELSINRIT-ELPE--RLP--SALQSLDLFHNKI-SCLPENLP--EELRYLSVYDNS-IRTLPAHLPSGITHLNVQSNSL  316 (754)
T ss_pred             EECcCCccC-cCCh--hHh--CCCCEEECcCCcc-CccccccC--CCCcEEECCCCc-cccCcccchhhHHHHHhcCCcc
Confidence            888888887 7765  442  4788888888874 45676442  578888888864 4455554456788888888888


Q ss_pred             cccChhhhccCCCCeEecccCcccccccccccCCCCCCEEEecCCCCCCccccccCCCCCCcEEEcccCCCcccchhhhc
Q 037308          189 EELPSSIERLLRLGHLDLSDCKRLKSLPSSLFKLKSLGVLNLGGCSNLQRLPECLGQLSSPIILNLAKTNVERIPESIIQ  268 (321)
Q Consensus       189 ~~l~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~l~~~l~~  268 (321)
                      +.+|..+.  ++|+.|++++|.+.. +|..+.  ++|+.|++++|++. .+|..+.  ++|+.|++++|.++.+|..+. 
T Consensus       317 t~LP~~l~--~sL~~L~Ls~N~Lt~-LP~~l~--~sL~~L~Ls~N~L~-~LP~~lp--~~L~~LdLs~N~Lt~LP~~l~-  387 (754)
T PRK15370        317 TALPETLP--PGLKTLEAGENALTS-LPASLP--PELQVLDVSKNQIT-VLPETLP--PTITTLDVSRNALTNLPENLP-  387 (754)
T ss_pred             ccCCcccc--ccceeccccCCcccc-CChhhc--CcccEEECCCCCCC-cCChhhc--CCcCEEECCCCcCCCCCHhHH-
Confidence            88775442  578888888887654 554442  68888888887764 4555443  578889998888888887664 


Q ss_pred             cCCcCEEeccCCCCccccc
Q 037308          269 LFVLRYLLLSYSERIQSVS  287 (321)
Q Consensus       269 l~~L~~L~l~~n~~l~~~~  287 (321)
                       ..|+.|++++| .+..+|
T Consensus       388 -~sL~~LdLs~N-~L~~LP  404 (754)
T PRK15370        388 -AALQIMQASRN-NLVRLP  404 (754)
T ss_pred             -HHHHHHhhccC-CcccCc
Confidence             36888888888 777766

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=99.72  E-value=2.2e-17  Score=159.50  Aligned_cols=225  Identities=22%  Similarity=0.303  Sum_probs=175.3

Q ss_pred             CCceEEEEeecCCCCccccceeccCCCCcCcccEEEecCCCCCCCCCcCCcCceeEEeccCCcccccccCCCCCCChHhH
Q 037308           29 PKLRFLKFYSSSFNGENKCKVSYLQDPRFAEVKYFHWHGYPLKSLPSNLSAEKLVFLKVPYSDIEQLWNGEKHYSNLNQI  108 (321)
Q Consensus        29 ~~L~~L~l~~n~~~~~~~~~~~~~~~l~~~~L~~l~l~~~~l~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~l~~L~~~  108 (321)
                      ++|+.|++++|.++.       .+..+ ..+|+.|++++|.+..+|..+ .++|+.|++++|.+..++..+.  .+|+. 
T Consensus       199 ~~L~~L~Ls~N~Lts-------LP~~l-~~nL~~L~Ls~N~LtsLP~~l-~~~L~~L~Ls~N~L~~LP~~l~--s~L~~-  266 (754)
T PRK15370        199 EQITTLILDNNELKS-------LPENL-QGNIKTLYANSNQLTSIPATL-PDTIQEMELSINRITELPERLP--SALQS-  266 (754)
T ss_pred             cCCcEEEecCCCCCc-------CChhh-ccCCCEEECCCCccccCChhh-hccccEEECcCCccCcCChhHh--CCCCE-
Confidence            579999999998652       12111 268999999999999988754 3589999999999998876543  46778 


Q ss_pred             HhhccccccccCCCCCCCCCCCCccEEEccCCCCCcccCccccCcccCcEEecCCCCCcccccccccCCccEEEeccccc
Q 037308          109 INATCNKLIAKTPNPTLMPHLNKLVILNLRGSKSLKSLPSGIFNLEFLTKLDLSGCSKLKRLLEISSGNINWLFLRETAI  188 (321)
Q Consensus       109 l~l~~~~l~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~i  188 (321)
                      |++++|.++ .+|.  .+.  .+|+.|++++|.+ ..+|..+  .++|+.|++++|. +..+|...+++|+.|++++|.+
T Consensus       267 L~Ls~N~L~-~LP~--~l~--~sL~~L~Ls~N~L-t~LP~~l--p~sL~~L~Ls~N~-Lt~LP~~l~~sL~~L~Ls~N~L  337 (754)
T PRK15370        267 LDLFHNKIS-CLPE--NLP--EELRYLSVYDNSI-RTLPAHL--PSGITHLNVQSNS-LTALPETLPPGLKTLEAGENAL  337 (754)
T ss_pred             EECcCCccC-cccc--ccC--CCCcEEECCCCcc-ccCcccc--hhhHHHHHhcCCc-cccCCccccccceeccccCCcc
Confidence            999999999 7775  443  5899999999984 4566544  2578999999975 4456655578999999999999


Q ss_pred             cccChhhhccCCCCeEecccCcccccccccccCCCCCCEEEecCCCCCCccccccCCCCCCcEEEcccCCCcccchhhh-
Q 037308          189 EELPSSIERLLRLGHLDLSDCKRLKSLPSSLFKLKSLGVLNLGGCSNLQRLPECLGQLSSPIILNLAKTNVERIPESII-  267 (321)
Q Consensus       189 ~~l~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~l~~~l~-  267 (321)
                      +.+|..+.  ++|+.|++++|++. .+|..+  .++|+.|++++|++. .+|..+.  .+|+.|++++|+++.+|..+. 
T Consensus       338 t~LP~~l~--~sL~~L~Ls~N~L~-~LP~~l--p~~L~~LdLs~N~Lt-~LP~~l~--~sL~~LdLs~N~L~~LP~sl~~  409 (754)
T PRK15370        338 TSLPASLP--PELQVLDVSKNQIT-VLPETL--PPTITTLDVSRNALT-NLPENLP--AALQIMQASRNNLVRLPESLPH  409 (754)
T ss_pred             ccCChhhc--CcccEEECCCCCCC-cCChhh--cCCcCEEECCCCcCC-CCCHhHH--HHHHHHhhccCCcccCchhHHH
Confidence            99997653  78999999999866 456544  368999999998765 5666543  379999999999998886553 


Q ss_pred             ---ccCCcCEEeccCCCC
Q 037308          268 ---QLFVLRYLLLSYSER  282 (321)
Q Consensus       268 ---~l~~L~~L~l~~n~~  282 (321)
                         .++.+..|++.+|+.
T Consensus       410 ~~~~~~~l~~L~L~~Npl  427 (754)
T PRK15370        410 FRGEGPQPTRIIVEYNPF  427 (754)
T ss_pred             HhhcCCCccEEEeeCCCc
Confidence               457889999999953

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=99.72  E-value=8.6e-17  Score=154.89  Aligned_cols=227  Identities=23%  Similarity=0.184  Sum_probs=145.2

Q ss_pred             CCceEEEEeecCCCCccccceeccCCCCcCcccEEEecCCCCCCCCCcCCcCceeEEeccCCcccccccCCCCCCChHhH
Q 037308           29 PKLRFLKFYSSSFNGENKCKVSYLQDPRFAEVKYFHWHGYPLKSLPSNLSAEKLVFLKVPYSDIEQLWNGEKHYSNLNQI  108 (321)
Q Consensus        29 ~~L~~L~l~~n~~~~~~~~~~~~~~~l~~~~L~~l~l~~~~l~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~l~~L~~~  108 (321)
                      .+-..|+++.+.++ .      .|..+. .+|+.|++.+|.++.+|..  +++|++|++++|+++.++..   .++|+. 
T Consensus       201 ~~~~~LdLs~~~Lt-s------LP~~l~-~~L~~L~L~~N~Lt~LP~l--p~~Lk~LdLs~N~LtsLP~l---p~sL~~-  266 (788)
T PRK15387        201 NGNAVLNVGESGLT-T------LPDCLP-AHITTLVIPDNNLTSLPAL--PPELRTLEVSGNQLTSLPVL---PPGLLE-  266 (788)
T ss_pred             CCCcEEEcCCCCCC-c------CCcchh-cCCCEEEccCCcCCCCCCC--CCCCcEEEecCCccCcccCc---ccccce-
Confidence            45678999988754 1      222222 5899999999999999864  78999999999999988643   457777 


Q ss_pred             HhhccccccccCCCCCCCCCCCCccEEEccCCCCCcccCccccCcccCcEEecCCCCCcccccccccCCccEEEeccccc
Q 037308          109 INATCNKLIAKTPNPTLMPHLNKLVILNLRGSKSLKSLPSGIFNLEFLTKLDLSGCSKLKRLLEISSGNINWLFLRETAI  188 (321)
Q Consensus       109 l~l~~~~l~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~i  188 (321)
                      |+++.|.+. .+|.  .   ..+|+.|++++|. +..+|.   ..++|+.|++++|. +..+|.. +.+|+.|++++|.+
T Consensus       267 L~Ls~N~L~-~Lp~--l---p~~L~~L~Ls~N~-Lt~LP~---~p~~L~~LdLS~N~-L~~Lp~l-p~~L~~L~Ls~N~L  334 (788)
T PRK15387        267 LSIFSNPLT-HLPA--L---PSGLCKLWIFGNQ-LTSLPV---LPPGLQELSVSDNQ-LASLPAL-PSELCKLWAYNNQL  334 (788)
T ss_pred             eeccCCchh-hhhh--c---hhhcCEEECcCCc-cccccc---cccccceeECCCCc-cccCCCC-cccccccccccCcc
Confidence            999999998 6664  2   3678899999998 556675   35789999999974 4455554 56777788888887


Q ss_pred             cccChhhhccCCCCeEecccCcccccccccccCCCCCCEEEecCCCCCCccccccCCCCCCcEEEcccCCCcccchhhhc
Q 037308          189 EELPSSIERLLRLGHLDLSDCKRLKSLPSSLFKLKSLGVLNLGGCSNLQRLPECLGQLSSPIILNLAKTNVERIPESIIQ  268 (321)
Q Consensus       189 ~~l~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~l~~~l~~  268 (321)
                      +++|..   ..+|+.|++++|++.+ +|..   ..+|+.|++++|.+. .+|..   .++|+.|++++|.++.+|..   
T Consensus       335 ~~LP~l---p~~Lq~LdLS~N~Ls~-LP~l---p~~L~~L~Ls~N~L~-~LP~l---~~~L~~LdLs~N~Lt~LP~l---  400 (788)
T PRK15387        335 TSLPTL---PSGLQELSVSDNQLAS-LPTL---PSELYKLWAYNNRLT-SLPAL---PSGLKELIVSGNRLTSLPVL---  400 (788)
T ss_pred             cccccc---ccccceEecCCCccCC-CCCC---Ccccceehhhccccc-cCccc---ccccceEEecCCcccCCCCc---
Confidence            777642   2467777787777554 3321   234445555544433 23321   23445555555555544421   


Q ss_pred             cCCcCEEeccCCCCccccc-Ccccccccc
Q 037308          269 LFVLRYLLLSYSERIQSVS-LPLARGILE  296 (321)
Q Consensus       269 l~~L~~L~l~~n~~l~~~~-~~~~l~~l~  296 (321)
                      .++|++|++++| .++.+| .|.+++.|+
T Consensus       401 ~s~L~~LdLS~N-~LssIP~l~~~L~~L~  428 (788)
T PRK15387        401 PSELKELMVSGN-RLTSLPMLPSGLLSLS  428 (788)
T ss_pred             ccCCCEEEccCC-cCCCCCcchhhhhhhh
Confidence            134444444444 344444 333333333

>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]

Probab=99.69  E-value=1.3e-18  Score=164.06  Aligned_cols=217  Identities=25%  Similarity=0.346  Sum_probs=145.3

Q ss_pred             CcccEEEecCCCCCCCCCcC-CcCceeEEeccCCcccccccCCCCCCChHhHHhhccccccccCCCCCCCCCCCCccEEE
Q 037308           58 AEVKYFHWHGYPLKSLPSNL-SAEKLVFLKVPYSDIEQLWNGEKHYSNLNQIINATCNKLIAKTPNPTLMPHLNKLVILN  136 (321)
Q Consensus        58 ~~L~~l~l~~~~l~~~~~~~-~l~~L~~L~l~~~~l~~~~~~~~~l~~L~~~l~l~~~~l~~~~~~~~~~~~l~~L~~L~  136 (321)
                      .+|++++++.+.+..+|.++ .+.+|+.++..+|++..++.......+|+. +.+..|.++ .+|.  ...+++.|+.|+
T Consensus       241 ~nl~~~dis~n~l~~lp~wi~~~~nle~l~~n~N~l~~lp~ri~~~~~L~~-l~~~~nel~-yip~--~le~~~sL~tLd  316 (1081)
T KOG0618|consen  241 LNLQYLDISHNNLSNLPEWIGACANLEALNANHNRLVALPLRISRITSLVS-LSAAYNELE-YIPP--FLEGLKSLRTLD  316 (1081)
T ss_pred             ccceeeecchhhhhcchHHHHhcccceEecccchhHHhhHHHHhhhhhHHH-HHhhhhhhh-hCCC--cccccceeeeee
Confidence            89999999999999999776 899999999999999999999999999999 999999999 8876  788899999999


Q ss_pred             ccCCCCCcccCccc-cCcc-cCcEEe------------------------cCCCCCccc-cccc-ccCCccEEEeccccc
Q 037308          137 LRGSKSLKSLPSGI-FNLE-FLTKLD------------------------LSGCSKLKR-LLEI-SSGNINWLFLRETAI  188 (321)
Q Consensus       137 l~~n~~~~~~p~~l-~~l~-~L~~L~------------------------l~~~~~~~~-~~~~-~~~~L~~L~l~~~~i  188 (321)
                      +..|. +..+|+.+ .... +|..++                        +.+|..... +|.. .+..|+.|+++.|.+
T Consensus       317 L~~N~-L~~lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsyNrL  395 (1081)
T KOG0618|consen  317 LQSNN-LPSLPDNFLAVLNASLNTLNVSSNKLSTLPSYEENNHAALQELYLANNHLTDSCFPVLVNFKHLKVLHLSYNRL  395 (1081)
T ss_pred             ehhcc-ccccchHHHhhhhHHHHHHhhhhccccccccccchhhHHHHHHHHhcCcccccchhhhccccceeeeeeccccc
Confidence            99988 55555532 1111 233333                        333332221 2222 355566666666666


Q ss_pred             cccChh-hhccCCCCeEecccCcccccccccccCCCCCCEEEecCCCCCCccccccCCCCCCcEEEcccCCCc--ccchh
Q 037308          189 EELPSS-IERLLRLGHLDLSDCKRLKSLPSSLFKLKSLGVLNLGGCSNLQRLPECLGQLSSPIILNLAKTNVE--RIPES  265 (321)
Q Consensus       189 ~~l~~~-~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~--~l~~~  265 (321)
                      ..+|.+ +.++..|++|++++|++. .+|..+..+..|+.|...+|.+. .+| .+..+++|+.+|++.|.++  .+|..
T Consensus       396 ~~fpas~~~kle~LeeL~LSGNkL~-~Lp~tva~~~~L~tL~ahsN~l~-~fP-e~~~l~qL~~lDlS~N~L~~~~l~~~  472 (1081)
T KOG0618|consen  396 NSFPASKLRKLEELEELNLSGNKLT-TLPDTVANLGRLHTLRAHSNQLL-SFP-ELAQLPQLKVLDLSCNNLSEVTLPEA  472 (1081)
T ss_pred             ccCCHHHHhchHHhHHHhcccchhh-hhhHHHHhhhhhHHHhhcCCcee-ech-hhhhcCcceEEecccchhhhhhhhhh
Confidence            666643 455566666666666633 34455566666666666554432 333 4556666666666666666  33322


Q ss_pred             hhccCCcCEEeccCCCCc
Q 037308          266 IIQLFVLRYLLLSYSERI  283 (321)
Q Consensus       266 l~~l~~L~~L~l~~n~~l  283 (321)
                      +.. ++|++|+++||.++
T Consensus       473 ~p~-p~LkyLdlSGN~~l  489 (1081)
T KOG0618|consen  473 LPS-PNLKYLDLSGNTRL  489 (1081)
T ss_pred             CCC-cccceeeccCCccc
Confidence            221 56666666666543

>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]

Probab=99.67  E-value=1.9e-18  Score=133.46  Aligned_cols=173  Identities=25%  Similarity=0.355  Sum_probs=138.0

Q ss_pred             CCCCCCcCCcCceeEEeccCCcccccccCCCCCCChHhHHhhccccccccCCCCCCCCCCCCccEEEccCCCCCcccCcc
Q 037308           70 LKSLPSNLSAEKLVFLKVPYSDIEQLWNGEKHYSNLNQIINATCNKLIAKTPNPTLMPHLNKLVILNLRGSKSLKSLPSG  149 (321)
Q Consensus        70 l~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~l~~L~~~l~l~~~~l~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~  149 (321)
                      +..++..+.+++++.|.+++|+++.++.....+.+++. +++..|.++ ++|.  .+..+++|+.|++..|+ ....|..
T Consensus        23 f~~~~gLf~~s~ITrLtLSHNKl~~vppnia~l~nlev-ln~~nnqie-~lp~--~issl~klr~lnvgmnr-l~~lprg   97 (264)
T KOG0617|consen   23 FEELPGLFNMSNITRLTLSHNKLTVVPPNIAELKNLEV-LNLSNNQIE-ELPT--SISSLPKLRILNVGMNR-LNILPRG   97 (264)
T ss_pred             HhhcccccchhhhhhhhcccCceeecCCcHHHhhhhhh-hhcccchhh-hcCh--hhhhchhhhheecchhh-hhcCccc
Confidence            34566667888888888888888888888888888888 888888888 8876  88888888888888877 6677877


Q ss_pred             ccCcccCcEEecCCCCCcccccccccCCccEEEeccccccccChhhhccCCCCeEecccCcccccccccccCCCCCCEEE
Q 037308          150 IFNLEFLTKLDLSGCSKLKRLLEISSGNINWLFLRETAIEELPSSIERLLRLGHLDLSDCKRLKSLPSSLFKLKSLGVLN  229 (321)
Q Consensus       150 l~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~i~~l~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~  229 (321)
                      |+.++.|+.|++..|..-+                    ..+|..|..+..|+.|++++|. ...+|..++.+++|+.|.
T Consensus        98 fgs~p~levldltynnl~e--------------------~~lpgnff~m~tlralyl~dnd-fe~lp~dvg~lt~lqil~  156 (264)
T KOG0617|consen   98 FGSFPALEVLDLTYNNLNE--------------------NSLPGNFFYMTTLRALYLGDND-FEILPPDVGKLTNLQILS  156 (264)
T ss_pred             cCCCchhhhhhcccccccc--------------------ccCCcchhHHHHHHHHHhcCCC-cccCChhhhhhcceeEEe
Confidence            8888888888777654222                    1367678888889999999977 556777889999999999


Q ss_pred             ecCCCCCCccccccCCCCCCcEEEcccCCCcccchhhhcc
Q 037308          230 LGGCSNLQRLPECLGQLSSPIILNLAKTNVERIPESIIQL  269 (321)
Q Consensus       230 l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~l~~~l~~l  269 (321)
                      +.+|... .+|..++.++.|++|.+.+|+++.+|..++.+
T Consensus       157 lrdndll-~lpkeig~lt~lrelhiqgnrl~vlppel~~l  195 (264)
T KOG0617|consen  157 LRDNDLL-SLPKEIGDLTRLRELHIQGNRLTVLPPELANL  195 (264)
T ss_pred             eccCchh-hCcHHHHHHHHHHHHhcccceeeecChhhhhh
Confidence            9987654 45678889999999999999999999777654

>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]

Probab=99.67  E-value=9.5e-19  Score=164.99  Aligned_cols=258  Identities=22%  Similarity=0.285  Sum_probs=193.2

Q ss_pred             hcCCCCceEEEEeecCCCCccccceeccCCCCcCcccEEEecCCCCCCCCCcCCcCceeEEeccCCcccccccCCCCCCC
Q 037308           25 FTKMPKLRFLKFYSSSFNGENKCKVSYLQDPRFAEVKYFHWHGYPLKSLPSNLSAEKLVFLKVPYSDIEQLWNGEKHYSN  104 (321)
Q Consensus        25 l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~l~~~~L~~l~l~~~~l~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~l~~  104 (321)
                      +..+++|+.+....|++.         .-.+..++++.++...|++..+-......+|++++++.+++..++.-++.+.+
T Consensus       195 ls~~~~l~~l~c~rn~ls---------~l~~~g~~l~~L~a~~n~l~~~~~~p~p~nl~~~dis~n~l~~lp~wi~~~~n  265 (1081)
T KOG0618|consen  195 LSNLANLEVLHCERNQLS---------ELEISGPSLTALYADHNPLTTLDVHPVPLNLQYLDISHNNLSNLPEWIGACAN  265 (1081)
T ss_pred             hhhccchhhhhhhhcccc---------eEEecCcchheeeeccCcceeeccccccccceeeecchhhhhcchHHHHhccc
Confidence            445556666666555421         00112288999999999988655555788999999999999999988899999


Q ss_pred             hHhHHhhccccccccCCCCCCCCCCCCccEEEccCCCCCcccCccccCcccCcEEecCCCCCccccccc-----------
Q 037308          105 LNQIINATCNKLIAKTPNPTLMPHLNKLVILNLRGSKSLKSLPSGIFNLEFLTKLDLSGCSKLKRLLEI-----------  173 (321)
Q Consensus       105 L~~~l~l~~~~l~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~l~~l~~L~~L~l~~~~~~~~~~~~-----------  173 (321)
                      ++. +....|.++ .+|.  .+...++|++|.+.+|. ...+|+...++++|++|++..|.. ..+|..           
T Consensus       266 le~-l~~n~N~l~-~lp~--ri~~~~~L~~l~~~~ne-l~yip~~le~~~sL~tLdL~~N~L-~~lp~~~l~v~~~~l~~  339 (1081)
T KOG0618|consen  266 LEA-LNANHNRLV-ALPL--RISRITSLVSLSAAYNE-LEYIPPFLEGLKSLRTLDLQSNNL-PSLPDNFLAVLNASLNT  339 (1081)
T ss_pred             ceE-ecccchhHH-hhHH--HHhhhhhHHHHHhhhhh-hhhCCCcccccceeeeeeehhccc-cccchHHHhhhhHHHHH
Confidence            999 999999998 8877  78889999999999998 777888788899999999998643 222221           


Q ss_pred             -----------------ccCCccEEEeccccccc--cChhhhccCCCCeEecccCcccccccccccCCCCCCEEEecCCC
Q 037308          174 -----------------SSGNINWLFLRETAIEE--LPSSIERLLRLGHLDLSDCKRLKSLPSSLFKLKSLGVLNLGGCS  234 (321)
Q Consensus       174 -----------------~~~~L~~L~l~~~~i~~--l~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~~~  234 (321)
                                       ..+.|+.|.+.+|.+++  +| .+.+.+.|+.|++++|.+.......+.+++.|+.|++++|.
T Consensus       340 ln~s~n~l~~lp~~~e~~~~~Lq~LylanN~Ltd~c~p-~l~~~~hLKVLhLsyNrL~~fpas~~~kle~LeeL~LSGNk  418 (1081)
T KOG0618|consen  340 LNVSSNKLSTLPSYEENNHAALQELYLANNHLTDSCFP-VLVNFKHLKVLHLSYNRLNSFPASKLRKLEELEELNLSGNK  418 (1081)
T ss_pred             HhhhhccccccccccchhhHHHHHHHHhcCcccccchh-hhccccceeeeeecccccccCCHHHHhchHHhHHHhcccch
Confidence                             22335666666777665  33 36667778888888877444444557777888888888854


Q ss_pred             CCCccccccCCCCCCcEEEcccCCCcccchhhhccCCcCEEeccCCCCccccc----Cc-cccccccccccC
Q 037308          235 NLQRLPECLGQLSSPIILNLAKTNVERIPESIIQLFVLRYLLLSYSERIQSVS----LP-LARGILEDTQRS  301 (321)
Q Consensus       235 ~~~~~~~~~~~~~~L~~L~l~~n~l~~l~~~l~~l~~L~~L~l~~n~~l~~~~----~~-~~l~~l~~~~~~  301 (321)
                       ...+|+++..+..|+.|...+|++..+| .+..++.|+.+|++.| .|+.+-    .| +++++||..+..
T Consensus       419 -L~~Lp~tva~~~~L~tL~ahsN~l~~fP-e~~~l~qL~~lDlS~N-~L~~~~l~~~~p~p~LkyLdlSGN~  487 (1081)
T KOG0618|consen  419 -LTTLPDTVANLGRLHTLRAHSNQLLSFP-ELAQLPQLKVLDLSCN-NLSEVTLPEALPSPNLKYLDLSGNT  487 (1081)
T ss_pred             -hhhhhHHHHhhhhhHHHhhcCCceeech-hhhhcCcceEEecccc-hhhhhhhhhhCCCcccceeeccCCc
Confidence             4556677777888888888888888888 6778888999999888 776664    77 888899888855

>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]

Probab=99.61  E-value=1.5e-17  Score=128.58  Aligned_cols=172  Identities=27%  Similarity=0.391  Sum_probs=138.0

Q ss_pred             cCCCCCCChHhHHhhccccccccCCCCCCCCCCCCccEEEccCCCCCcccCccccCcccCcEEecCCCCCcccccccccC
Q 037308           97 NGEKHYSNLNQIINATCNKLIAKTPNPTLMPHLNKLVILNLRGSKSLKSLPSGIFNLEFLTKLDLSGCSKLKRLLEISSG  176 (321)
Q Consensus        97 ~~~~~l~~L~~~l~l~~~~l~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~l~~l~~L~~L~l~~~~~~~~~~~~~~~  176 (321)
                      .+++.+.+++. +.+++|+++ .+|.  .++.+.+|+.|++++|+ +..+|..++.+++|++|+++-             
T Consensus        27 ~gLf~~s~ITr-LtLSHNKl~-~vpp--nia~l~nlevln~~nnq-ie~lp~~issl~klr~lnvgm-------------   88 (264)
T KOG0617|consen   27 PGLFNMSNITR-LTLSHNKLT-VVPP--NIAELKNLEVLNLSNNQ-IEELPTSISSLPKLRILNVGM-------------   88 (264)
T ss_pred             ccccchhhhhh-hhcccCcee-ecCC--cHHHhhhhhhhhcccch-hhhcChhhhhchhhhheecch-------------
Confidence            45566666666 777888887 7765  77778888888888877 667777677777777776664             


Q ss_pred             CccEEEeccccccccChhhhccCCCCeEecccCcccc-cccccccCCCCCCEEEecCCCCCCccccccCCCCCCcEEEcc
Q 037308          177 NINWLFLRETAIEELPSSIERLLRLGHLDLSDCKRLK-SLPSSLFKLKSLGVLNLGGCSNLQRLPECLGQLSSPIILNLA  255 (321)
Q Consensus       177 ~L~~L~l~~~~i~~l~~~~~~l~~L~~L~l~~n~~~~-~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~  255 (321)
                               |++.-+|.+|+.++.|+.||++.|++.. .+|..|..+..|+.|++++|. ...+|..++.+++|+.|.+.
T Consensus        89 ---------nrl~~lprgfgs~p~levldltynnl~e~~lpgnff~m~tlralyl~dnd-fe~lp~dvg~lt~lqil~lr  158 (264)
T KOG0617|consen   89 ---------NRLNILPRGFGSFPALEVLDLTYNNLNENSLPGNFFYMTTLRALYLGDND-FEILPPDVGKLTNLQILSLR  158 (264)
T ss_pred             ---------hhhhcCccccCCCchhhhhhccccccccccCCcchhHHHHHHHHHhcCCC-cccCChhhhhhcceeEEeec
Confidence                     4455567789999999999999998775 678889999999999999965 46677889999999999999


Q ss_pred             cCCCcccchhhhccCCcCEEeccCCCCcccccCccccccccccc
Q 037308          256 KTNVERIPESIIQLFVLRYLLLSYSERIQSVSLPLARGILEDTQ  299 (321)
Q Consensus       256 ~n~l~~l~~~l~~l~~L~~L~l~~n~~l~~~~~~~~l~~l~~~~  299 (321)
                      .|.+-++|..++.++.|++|+|.+| +++.+|  +.+..++...
T Consensus       159 dndll~lpkeig~lt~lrelhiqgn-rl~vlp--pel~~l~l~~  199 (264)
T KOG0617|consen  159 DNDLLSLPKEIGDLTRLRELHIQGN-RLTVLP--PELANLDLVG  199 (264)
T ss_pred             cCchhhCcHHHHHHHHHHHHhcccc-eeeecC--hhhhhhhhhh
Confidence            9999999999999999999999999 888855  5555554433

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=99.59  E-value=1.2e-16  Score=142.01  Aligned_cols=235  Identities=20%  Similarity=0.169  Sum_probs=116.5

Q ss_pred             hhhcCCCCceEEEEeecCCCCccccceeccCCCCc-CcccEEEecCCCCCCCCC-------cC-CcCceeEEeccCCccc
Q 037308           23 STFTKMPKLRFLKFYSSSFNGENKCKVSYLQDPRF-AEVKYFHWHGYPLKSLPS-------NL-SAEKLVFLKVPYSDIE   93 (321)
Q Consensus        23 ~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~l~~-~~L~~l~l~~~~l~~~~~-------~~-~l~~L~~L~l~~~~l~   93 (321)
                      ..+..+.+|+.+++.++.+++...  ...+..+.. ++++.+++.++.+...+.       .+ .+++|+.|++++|.+.
T Consensus        17 ~~~~~l~~L~~l~l~~~~l~~~~~--~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~   94 (319)
T cd00116          17 ELLPKLLCLQVLRLEGNTLGEEAA--KALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDLSDNALG   94 (319)
T ss_pred             HHHHHHhhccEEeecCCCCcHHHH--HHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhcCceeEEEccCCCCC
Confidence            456667789999999987654321  122333444 778999998877653222       12 5778888888888875


Q ss_pred             ccc-cCCCCCCChHhHHhhccccccccCCCCCCCCCCCCccEEEccCCCCCc----ccCccccCc-ccCcEEecCCCCCc
Q 037308           94 QLW-NGEKHYSNLNQIINATCNKLIAKTPNPTLMPHLNKLVILNLRGSKSLK----SLPSGIFNL-EFLTKLDLSGCSKL  167 (321)
Q Consensus        94 ~~~-~~~~~l~~L~~~l~l~~~~l~~~~~~~~~~~~l~~L~~L~l~~n~~~~----~~p~~l~~l-~~L~~L~l~~~~~~  167 (321)
                      ... ..+..+..                       . ++|++|++++|.+..    .+...+..+ ++|+.+++++|...
T Consensus        95 ~~~~~~~~~l~~-----------------------~-~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~  150 (319)
T cd00116          95 PDGCGVLESLLR-----------------------S-SSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLE  150 (319)
T ss_pred             hhHHHHHHHHhc-----------------------c-CcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCC
Confidence            311 11111111                       1 335555555544321    111122233 44555555554432


Q ss_pred             cc----cccc--ccCCccEEEeccccccc-----cChhhhccCCCCeEecccCccccc----ccccccCCCCCCEEEecC
Q 037308          168 KR----LLEI--SSGNINWLFLRETAIEE-----LPSSIERLLRLGHLDLSDCKRLKS----LPSSLFKLKSLGVLNLGG  232 (321)
Q Consensus       168 ~~----~~~~--~~~~L~~L~l~~~~i~~-----l~~~~~~l~~L~~L~l~~n~~~~~----~~~~~~~l~~L~~L~l~~  232 (321)
                      ..    ++..  .+.+|++|++++|.+++     ++..+..+++|++|++++|.+.+.    +...+..+++|+.|++++
T Consensus       151 ~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~  230 (319)
T cd00116         151 GASCEALAKALRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGD  230 (319)
T ss_pred             chHHHHHHHHHHhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCC
Confidence            11    1111  12345555555555542     222233344666666666554422    222344555666666666


Q ss_pred             CCCCCccccccC-----CCCCCcEEEcccCCCc-----ccchhhhccCCcCEEeccCCCCcc
Q 037308          233 CSNLQRLPECLG-----QLSSPIILNLAKTNVE-----RIPESIIQLFVLRYLLLSYSERIQ  284 (321)
Q Consensus       233 ~~~~~~~~~~~~-----~~~~L~~L~l~~n~l~-----~l~~~l~~l~~L~~L~l~~n~~l~  284 (321)
                      |.+.......+.     ..+.|+.|++++|.++     .+...+..++.|+++++++| .+.
T Consensus       231 n~l~~~~~~~l~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~L~~l~l~~N-~l~  291 (319)
T cd00116         231 NNLTDAGAAALASALLSPNISLLTLSLSCNDITDDGAKDLAEVLAEKESLLELDLRGN-KFG  291 (319)
T ss_pred             CcCchHHHHHHHHHHhccCCCceEEEccCCCCCcHHHHHHHHHHhcCCCccEEECCCC-CCc
Confidence            554431111111     1256666666666654     23334444556666666666 443

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=99.50  E-value=4.9e-15  Score=131.68  Aligned_cols=227  Identities=20%  Similarity=0.126  Sum_probs=151.8

Q ss_pred             CcccEEEecCCCCCC-----CCCcC-CcCceeEEeccCCcccccccCCCCCCChHhHHhhccccccccCCCCCCCCCCCC
Q 037308           58 AEVKYFHWHGYPLKS-----LPSNL-SAEKLVFLKVPYSDIEQLWNGEKHYSNLNQIINATCNKLIAKTPNPTLMPHLNK  131 (321)
Q Consensus        58 ~~L~~l~l~~~~l~~-----~~~~~-~l~~L~~L~l~~~~l~~~~~~~~~l~~L~~~l~l~~~~l~~~~~~~~~~~~l~~  131 (321)
                      ..|+.+++.++.+..     ++... ..++++.++++++.+.....      .+.            .++.  .+..+++
T Consensus        23 ~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~------~~~------------~~~~--~l~~~~~   82 (319)
T cd00116          23 LCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPR------GLQ------------SLLQ--GLTKGCG   82 (319)
T ss_pred             hhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcch------HHH------------HHHH--HHHhcCc
Confidence            557777777776532     22222 45567777776665542100      000            1222  4555789


Q ss_pred             ccEEEccCCCCCcccCccccCccc---CcEEecCCCCCccc----cccc--cc-CCccEEEeccccccc-----cChhhh
Q 037308          132 LVILNLRGSKSLKSLPSGIFNLEF---LTKLDLSGCSKLKR----LLEI--SS-GNINWLFLRETAIEE-----LPSSIE  196 (321)
Q Consensus       132 L~~L~l~~n~~~~~~p~~l~~l~~---L~~L~l~~~~~~~~----~~~~--~~-~~L~~L~l~~~~i~~-----l~~~~~  196 (321)
                      |++|++++|.+....+..+..+.+   |+.|++++|.....    +...  .. ++|+.|++++|.++.     ++..+.
T Consensus        83 L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~  162 (319)
T cd00116          83 LQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKALR  162 (319)
T ss_pred             eeEEEccCCCCChhHHHHHHHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHHHHH
Confidence            999999999876555554555555   99999999865421    1111  24 789999999999983     444567


Q ss_pred             ccCCCCeEecccCccccc----ccccccCCCCCCEEEecCCCCCCc----cccccCCCCCCcEEEcccCCCccc-chhh-
Q 037308          197 RLLRLGHLDLSDCKRLKS----LPSSLFKLKSLGVLNLGGCSNLQR----LPECLGQLSSPIILNLAKTNVERI-PESI-  266 (321)
Q Consensus       197 ~l~~L~~L~l~~n~~~~~----~~~~~~~l~~L~~L~l~~~~~~~~----~~~~~~~~~~L~~L~l~~n~l~~l-~~~l-  266 (321)
                      .+++|++|++++|.+.+.    ++..+..+++|+.|++++|.+.+.    +...+..+++|+.|++++|.++.. ...+ 
T Consensus       163 ~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~l~~~~~~~l~  242 (319)
T cd00116         163 ANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLTDAGAAALA  242 (319)
T ss_pred             hCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCCcCchHHHHHHH
Confidence            778999999999988742    333455667999999999987643    345667789999999999998842 1222 


Q ss_pred             hc----cCCcCEEeccCCCCcc---------cccCccccccccccccCccch
Q 037308          267 IQ----LFVLRYLLLSYSERIQ---------SVSLPLARGILEDTQRSPHMD  305 (321)
Q Consensus       267 ~~----l~~L~~L~l~~n~~l~---------~~~~~~~l~~l~~~~~~~~~~  305 (321)
                      ..    .+.|++|++.+| .++         .++..+.++.+++.++.....
T Consensus       243 ~~~~~~~~~L~~L~l~~n-~i~~~~~~~l~~~~~~~~~L~~l~l~~N~l~~~  293 (319)
T cd00116         243 SALLSPNISLLTLSLSCN-DITDDGAKDLAEVLAEKESLLELDLRGNKFGEE  293 (319)
T ss_pred             HHHhccCCCceEEEccCC-CCCcHHHHHHHHHHhcCCCccEEECCCCCCcHH
Confidence            22    379999999999 664         112235788888888666544

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]

Probab=99.50  E-value=2.7e-16  Score=135.93  Aligned_cols=260  Identities=16%  Similarity=0.104  Sum_probs=126.4

Q ss_pred             cCchhhhccChhhhcCCCCceEEEEeecCCCCccccceeccCCCCc-CcccEEEecC-CCCCCCCCcC--CcCceeEEec
Q 037308           12 MSTVKEIRLNLSTFTKMPKLRFLKFYSSSFNGENKCKVSYLQDPRF-AEVKYFHWHG-YPLKSLPSNL--SAEKLVFLKV   87 (321)
Q Consensus        12 ~~~~~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~l~~-~~L~~l~l~~-~~l~~~~~~~--~l~~L~~L~l   87 (321)
                      +..+.+..+++.+|+.+++||+|||++|.++      ...+.+++- +.+-.|-+.+ |+++.+|...  ++..++.|.+
T Consensus        74 LdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is------~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~slqrLll  147 (498)
T KOG4237|consen   74 LDQNQISSIPPGAFKTLHRLRRLDLSKNNIS------FIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGLSSLQRLLL  147 (498)
T ss_pred             eccCCcccCChhhccchhhhceecccccchh------hcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHHHHHHhc
Confidence            3344445666777777778888888777744      223334444 4555444444 6777777653  6777777777


Q ss_pred             cCCcccccc-cCCCCCCChHhHHhhccccccccCCCCCCCCCCCCccEEEccCCCCCc------------ccCccccCcc
Q 037308           88 PYSDIEQLW-NGEKHYSNLNQIINATCNKLIAKTPNPTLMPHLNKLVILNLRGSKSLK------------SLPSGIFNLE  154 (321)
Q Consensus        88 ~~~~l~~~~-~~~~~l~~L~~~l~l~~~~l~~~~~~~~~~~~l~~L~~L~l~~n~~~~------------~~p~~l~~l~  154 (321)
                      .-|++.-+. +.+..++++.. +.+-+|.+. .++. +.|..+..++.+.+..|.++.            ..|..+++..
T Consensus       148 Nan~i~Cir~~al~dL~~l~l-LslyDn~~q-~i~~-~tf~~l~~i~tlhlA~np~icdCnL~wla~~~a~~~ietsgar  224 (498)
T KOG4237|consen  148 NANHINCIRQDALRDLPSLSL-LSLYDNKIQ-SICK-GTFQGLAAIKTLHLAQNPFICDCNLPWLADDLAMNPIETSGAR  224 (498)
T ss_pred             ChhhhcchhHHHHHHhhhcch-hcccchhhh-hhcc-ccccchhccchHhhhcCccccccccchhhhHHhhchhhcccce
Confidence            666665443 34455666665 666677666 5442 356777777777776665322            1122222221


Q ss_pred             cCcEEecCCCCCccccccc-ccCCccEE--Ee-ccc-cccccCh-hhhccCCCCeEecccCcccccccccccCCCCCCEE
Q 037308          155 FLTKLDLSGCSKLKRLLEI-SSGNINWL--FL-RET-AIEELPS-SIERLLRLGHLDLSDCKRLKSLPSSLFKLKSLGVL  228 (321)
Q Consensus       155 ~L~~L~l~~~~~~~~~~~~-~~~~L~~L--~l-~~~-~i~~l~~-~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L  228 (321)
                      ...-.-+.... +...... ....++.+  .+ +.+ ....-|. .|..+++|++|++++|+++..-+.+|.+...++.|
T Consensus       225 c~~p~rl~~~R-i~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~i~~i~~~aFe~~a~l~eL  303 (498)
T KOG4237|consen  225 CVSPYRLYYKR-INQEDARKFLCSLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNNKITRIEDGAFEGAAELQEL  303 (498)
T ss_pred             ecchHHHHHHH-hcccchhhhhhhHHhHHHhhccccCcCCcChHHHHhhcccceEeccCCCccchhhhhhhcchhhhhhh
Confidence            11111111000 0000000 00001111  00 011 1111221 24555555555555555555444555555555555


Q ss_pred             EecCCCCCCccccccCCCCCCcEEEcccCCCcccc-hhhhccCCcCEEeccCCC
Q 037308          229 NLGGCSNLQRLPECLGQLSSPIILNLAKTNVERIP-ESIIQLFVLRYLLLSYSE  281 (321)
Q Consensus       229 ~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~l~-~~l~~l~~L~~L~l~~n~  281 (321)
                      .+.+|++...-...|.++..|+.|++.+|+|+.+. ..|..+..|.+|.+-+|+
T Consensus       304 ~L~~N~l~~v~~~~f~~ls~L~tL~L~~N~it~~~~~aF~~~~~l~~l~l~~Np  357 (498)
T KOG4237|consen  304 YLTRNKLEFVSSGMFQGLSGLKTLSLYDNQITTVAPGAFQTLFSLSTLNLLSNP  357 (498)
T ss_pred             hcCcchHHHHHHHhhhccccceeeeecCCeeEEEecccccccceeeeeehccCc
Confidence            55555443333334555555555555555555332 344445555555555443

>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]

Probab=99.44  E-value=8e-15  Score=126.96  Aligned_cols=253  Identities=17%  Similarity=0.122  Sum_probs=149.6

Q ss_pred             CcccEEEecCCCCCCCCCcC--CcCceeEEeccCCccccc-ccCCCCCCChHhHHhhccccccccCCCCCCCCCCCCccE
Q 037308           58 AEVKYFHWHGYPLKSLPSNL--SAEKLVFLKVPYSDIEQL-WNGEKHYSNLNQIINATCNKLIAKTPNPTLMPHLNKLVI  134 (321)
Q Consensus        58 ~~L~~l~l~~~~l~~~~~~~--~l~~L~~L~l~~~~l~~~-~~~~~~l~~L~~~l~l~~~~l~~~~~~~~~~~~l~~L~~  134 (321)
                      +.-..++|..|.++.+|...  .+++|+.|++++|.|+.+ +.++..++.+.+++..++|+|+ .+|. ..|.++.+++-
T Consensus        67 ~~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~-~l~k-~~F~gL~slqr  144 (498)
T KOG4237|consen   67 PETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKIT-DLPK-GAFGGLSSLQR  144 (498)
T ss_pred             CcceEEEeccCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchh-hhhh-hHhhhHHHHHH
Confidence            44556777777777777763  677777777777777776 4566777777774444667777 5553 24666666666


Q ss_pred             EEccCCCCCcccCccccCcccCcEEecCCCCCccccccc---ccCCccEEEecc--------------------------
Q 037308          135 LNLRGSKSLKSLPSGIFNLEFLTKLDLSGCSKLKRLLEI---SSGNINWLFLRE--------------------------  185 (321)
Q Consensus       135 L~l~~n~~~~~~p~~l~~l~~L~~L~l~~~~~~~~~~~~---~~~~L~~L~l~~--------------------------  185 (321)
                      |.+.-|.+.......|..++++..|.+.+|. +..++..   ....++.+.+..                          
T Consensus       145 LllNan~i~Cir~~al~dL~~l~lLslyDn~-~q~i~~~tf~~l~~i~tlhlA~np~icdCnL~wla~~~a~~~ietsga  223 (498)
T KOG4237|consen  145 LLLNANHINCIRQDALRDLPSLSLLSLYDNK-IQSICKGTFQGLAAIKTLHLAQNPFICDCNLPWLADDLAMNPIETSGA  223 (498)
T ss_pred             HhcChhhhcchhHHHHHHhhhcchhcccchh-hhhhccccccchhccchHhhhcCccccccccchhhhHHhhchhhcccc
Confidence            6555554333333344445555555555432 1111110   111222222222                          


Q ss_pred             ----------ccccccChh-h-hccCCCCeEecccCccccccc-ccccCCCCCCEEEecCCCCCCccccccCCCCCCcEE
Q 037308          186 ----------TAIEELPSS-I-ERLLRLGHLDLSDCKRLKSLP-SSLFKLKSLGVLNLGGCSNLQRLPECLGQLSSPIIL  252 (321)
Q Consensus       186 ----------~~i~~l~~~-~-~~l~~L~~L~l~~n~~~~~~~-~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L  252 (321)
                                .++..++.. + ....++..--.+.+...+..| ..|..+++|+.|++++|++...-+.+|.++.++++|
T Consensus       224 rc~~p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~i~~i~~~aFe~~a~l~eL  303 (498)
T KOG4237|consen  224 RCVSPYRLYYKRINQEDARKFLCSLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNNKITRIEDGAFEGAAELQEL  303 (498)
T ss_pred             eecchHHHHHHHhcccchhhhhhhHHhHHHhhccccCcCCcChHHHHhhcccceEeccCCCccchhhhhhhcchhhhhhh
Confidence                      222222211 1 111122111122233344444 358899999999999999988888899999999999


Q ss_pred             EcccCCCcccch-hhhccCCcCEEeccCCCCccccc--Cc---cccccccccccCccchhhHHHHHHHHH
Q 037308          253 NLAKTNVERIPE-SIIQLFVLRYLLLSYSERIQSVS--LP---LARGILEDTQRSPHMDHKLAVRWQEVQ  316 (321)
Q Consensus       253 ~l~~n~l~~l~~-~l~~l~~L~~L~l~~n~~l~~~~--~~---~~l~~l~~~~~~~~~~~~l~~~~~~~~  316 (321)
                      .+.+|++..+.. .|.++..|+.|++.+| +|+.+.  -.   .++..+.+..  .+.-......|-+-|
T Consensus       304 ~L~~N~l~~v~~~~f~~ls~L~tL~L~~N-~it~~~~~aF~~~~~l~~l~l~~--Np~~CnC~l~wl~~W  370 (498)
T KOG4237|consen  304 YLTRNKLEFVSSGMFQGLSGLKTLSLYDN-QITTVAPGAFQTLFSLSTLNLLS--NPFNCNCRLAWLGEW  370 (498)
T ss_pred             hcCcchHHHHHHHhhhccccceeeeecCC-eeEEEecccccccceeeeeehcc--CcccCccchHHHHHH
Confidence            999999998774 5688999999999999 887774  22   3444444433  222233445555544

>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]

Probab=99.33  E-value=1.9e-13  Score=116.83  Aligned_cols=254  Identities=19%  Similarity=0.161  Sum_probs=167.6

Q ss_pred             eEEEEeecCchhhhccChhhhcCCCCceEEEEeecCCCCccccceeccCCCCc-CcccEEEecCCCC----CCCCCc---
Q 037308            5 IEGICLDMSTVKEIRLNLSTFTKMPKLRFLKFYSSSFNGENKCKVSYLQDPRF-AEVKYFHWHGYPL----KSLPSN---   76 (321)
Q Consensus         5 ~~~~~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~l~~-~~L~~l~l~~~~l----~~~~~~---   76 (321)
                      +++..+-+...++.....+.+..+..++.+++++|.|.....  -.....+.. +.|+..+|+.-..    ..+|..   
T Consensus         6 ~~gk~lkl~t~ed~~~v~~~~~~~~s~~~l~lsgnt~G~EAa--~~i~~~L~~~~~L~~v~~sd~ftGR~~~Ei~e~L~~   83 (382)
T KOG1909|consen    6 IGGKSLKLETEEDEKDVEEELEPMDSLTKLDLSGNTFGTEAA--RAIAKVLASKKELREVNLSDMFTGRLKDEIPEALKM   83 (382)
T ss_pred             cCCeeeeeehHhhhhhHHHHhcccCceEEEeccCCchhHHHH--HHHHHHHhhcccceeeehHhhhcCCcHHHHHHHHHH
Confidence            344444444444455555677788999999999998654333  223344555 8888888875433    333332   


Q ss_pred             -----CCcCceeEEeccCCcccccccCCCCCCChHhHHhhccccccccCCCCCCCCCCCCccEEEccCCCCCcc------
Q 037308           77 -----LSAEKLVFLKVPYSDIEQLWNGEKHYSNLNQIINATCNKLIAKTPNPTLMPHLNKLVILNLRGSKSLKS------  145 (321)
Q Consensus        77 -----~~l~~L~~L~l~~~~l~~~~~~~~~l~~L~~~l~l~~~~l~~~~~~~~~~~~l~~L~~L~l~~n~~~~~------  145 (321)
                           ...++|+.++||+|.+..  .+.   +-+..                 .+.++..|++|++.+|.+...      
T Consensus        84 l~~aL~~~~~L~~ldLSDNA~G~--~g~---~~l~~-----------------ll~s~~~L~eL~L~N~Glg~~ag~~l~  141 (382)
T KOG1909|consen   84 LSKALLGCPKLQKLDLSDNAFGP--KGI---RGLEE-----------------LLSSCTDLEELYLNNCGLGPEAGGRLG  141 (382)
T ss_pred             HHHHHhcCCceeEeeccccccCc--cch---HHHHH-----------------HHHhccCHHHHhhhcCCCChhHHHHHH
Confidence                 267799999999998753  111   11111                 233345555555555552211      


Q ss_pred             -------cCccccCcccCcEEecCCCCCccccc----cc--ccCCccEEEeccccccc-----cChhhhccCCCCeEecc
Q 037308          146 -------LPSGIFNLEFLTKLDLSGCSKLKRLL----EI--SSGNINWLFLRETAIEE-----LPSSIERLLRLGHLDLS  207 (321)
Q Consensus       146 -------~p~~l~~l~~L~~L~l~~~~~~~~~~----~~--~~~~L~~L~l~~~~i~~-----l~~~~~~l~~L~~L~l~  207 (321)
                             ...-...-+.|+.++.++|.....-.    ..  ..+.|+.+.+.+|+|..     +..++.++++|++||+.
T Consensus       142 ~al~~l~~~kk~~~~~~Lrv~i~~rNrlen~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~  221 (382)
T KOG1909|consen  142 RALFELAVNKKAASKPKLRVFICGRNRLENGGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLR  221 (382)
T ss_pred             HHHHHHHHHhccCCCcceEEEEeeccccccccHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecc
Confidence                   00112235678888888876433211    11  35789999999998874     33468899999999999


Q ss_pred             cCcccc----cccccccCCCCCCEEEecCCCCCCcccccc-----CCCCCCcEEEcccCCCc-----ccchhhhccCCcC
Q 037308          208 DCKRLK----SLPSSLFKLKSLGVLNLGGCSNLQRLPECL-----GQLSSPIILNLAKTNVE-----RIPESIIQLFVLR  273 (321)
Q Consensus       208 ~n~~~~----~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~-----~~~~~L~~L~l~~n~l~-----~l~~~l~~l~~L~  273 (321)
                      +|.++.    .+...++.|+.|+.|++++|.+......++     ...|+|+.|.+.+|.++     .+..++...+.|+
T Consensus       222 DNtft~egs~~LakaL~s~~~L~El~l~dcll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~  301 (382)
T KOG1909|consen  222 DNTFTLEGSVALAKALSSWPHLRELNLGDCLLENEGAIAFVDALKESAPSLEVLELAGNEITRDAALALAACMAEKPDLE  301 (382)
T ss_pred             cchhhhHHHHHHHHHhcccchheeecccccccccccHHHHHHHHhccCCCCceeccCcchhHHHHHHHHHHHHhcchhhH
Confidence            998775    344567789999999999998876543322     34789999999999998     3444667789999


Q ss_pred             EEeccCCCCc
Q 037308          274 YLLLSYSERI  283 (321)
Q Consensus       274 ~L~l~~n~~l  283 (321)
                      +|++++| ++
T Consensus       302 kLnLngN-~l  310 (382)
T KOG1909|consen  302 KLNLNGN-RL  310 (382)
T ss_pred             HhcCCcc-cc
Confidence            9999999 55

>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]

Probab=99.31  E-value=1.5e-13  Score=124.17  Aligned_cols=209  Identities=23%  Similarity=0.351  Sum_probs=159.1

Q ss_pred             EEecCCCCCCCCCcC---CcCceeEEeccCCcccccccCCCCCCChHhHHhhccccccccCCCCCCCCCCCCccEEEccC
Q 037308           63 FHWHGYPLKSLPSNL---SAEKLVFLKVPYSDIEQLWNGEKHYSNLNQIINATCNKLIAKTPNPTLMPHLNKLVILNLRG  139 (321)
Q Consensus        63 l~l~~~~l~~~~~~~---~l~~L~~L~l~~~~l~~~~~~~~~l~~L~~~l~l~~~~l~~~~~~~~~~~~l~~L~~L~l~~  139 (321)
                      +.|++-.++.+|..-   .+..-+..+++.|++..++..+..+..|+. +.+..|.+. .+|.  .+..+..|.+|+++.
T Consensus        55 l~Ls~rrlk~fpr~a~~~~ltdt~~aDlsrNR~~elp~~~~~f~~Le~-liLy~n~~r-~ip~--~i~~L~~lt~l~ls~  130 (722)
T KOG0532|consen   55 LLLSGRRLKEFPRGAASYDLTDTVFADLSRNRFSELPEEACAFVSLES-LILYHNCIR-TIPE--AICNLEALTFLDLSS  130 (722)
T ss_pred             cccccchhhcCCCccccccccchhhhhccccccccCchHHHHHHHHHH-HHHHhccce-ecch--hhhhhhHHHHhhhcc
Confidence            345555556666542   566677888899999998888888888888 888888888 8877  888899999999999


Q ss_pred             CCCCcccCccccCcccCcEEecCCCCCccccccc--ccCCccEEEeccccccccChhhhccCCCCeEecccCcccccccc
Q 037308          140 SKSLKSLPSGIFNLEFLTKLDLSGCSKLKRLLEI--SSGNINWLFLRETAIEELPSSIERLLRLGHLDLSDCKRLKSLPS  217 (321)
Q Consensus       140 n~~~~~~p~~l~~l~~L~~L~l~~~~~~~~~~~~--~~~~L~~L~l~~~~i~~l~~~~~~l~~L~~L~l~~n~~~~~~~~  217 (321)
                      |+ +..+|..+..++ |+.|.+++|. ++.+|..  ....|..||++.|.+..+|..++++.+|+.|.+..|+ ...+|.
T Consensus       131 Nq-lS~lp~~lC~lp-Lkvli~sNNk-l~~lp~~ig~~~tl~~ld~s~nei~slpsql~~l~slr~l~vrRn~-l~~lp~  206 (722)
T KOG0532|consen  131 NQ-LSHLPDGLCDLP-LKVLIVSNNK-LTSLPEEIGLLPTLAHLDVSKNEIQSLPSQLGYLTSLRDLNVRRNH-LEDLPE  206 (722)
T ss_pred             ch-hhcCChhhhcCc-ceeEEEecCc-cccCCcccccchhHHHhhhhhhhhhhchHHhhhHHHHHHHHHhhhh-hhhCCH
Confidence            88 667776665555 8888888754 4444433  4667888889999998888888888889999888877 445666


Q ss_pred             cccCCCCCCEEEecCCCCCCccccccCCCCCCcEEEcccCCCcccchhhh---ccCCcCEEeccCCC
Q 037308          218 SLFKLKSLGVLNLGGCSNLQRLPECLGQLSSPIILNLAKTNVERIPESII---QLFVLRYLLLSYSE  281 (321)
Q Consensus       218 ~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~l~~~l~---~l~~L~~L~l~~n~  281 (321)
                      .+..+ .|..||++. +.+..+|-.|+.|+.|+.|-|.+|.+++-|..+.   ...-.|+|++..|+
T Consensus       207 El~~L-pLi~lDfSc-Nkis~iPv~fr~m~~Lq~l~LenNPLqSPPAqIC~kGkVHIFKyL~~qA~q  271 (722)
T KOG0532|consen  207 ELCSL-PLIRLDFSC-NKISYLPVDFRKMRHLQVLQLENNPLQSPPAQICEKGKVHIFKYLSTQACQ  271 (722)
T ss_pred             HHhCC-ceeeeeccc-CceeecchhhhhhhhheeeeeccCCCCCChHHHHhccceeeeeeecchhcc
Confidence            66644 478888876 4467788888999999999999999988776653   34456788888884

>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]

Probab=99.26  E-value=1.5e-13  Score=124.18  Aligned_cols=193  Identities=27%  Similarity=0.295  Sum_probs=157.7

Q ss_pred             eEEeccCCcccccccCCCC--CCChHhHHhhccccccccCCCCCCCCCCCCccEEEccCCCCCcccCccccCcccCcEEe
Q 037308           83 VFLKVPYSDIEQLWNGEKH--YSNLNQIINATCNKLIAKTPNPTLMPHLNKLVILNLRGSKSLKSLPSGIFNLEFLTKLD  160 (321)
Q Consensus        83 ~~L~l~~~~l~~~~~~~~~--l~~L~~~l~l~~~~l~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~l~~l~~L~~L~  160 (321)
                      -.|.|++-+++.++.+...  +..-.. .+++.|.+. ++|.  .+..+..|+.+.++.|. +..+|..+..+..|++++
T Consensus        53 g~l~Ls~rrlk~fpr~a~~~~ltdt~~-aDlsrNR~~-elp~--~~~~f~~Le~liLy~n~-~r~ip~~i~~L~~lt~l~  127 (722)
T KOG0532|consen   53 GRLLLSGRRLKEFPRGAASYDLTDTVF-ADLSRNRFS-ELPE--EACAFVSLESLILYHNC-IRTIPEAICNLEALTFLD  127 (722)
T ss_pred             cccccccchhhcCCCccccccccchhh-hhccccccc-cCch--HHHHHHHHHHHHHHhcc-ceecchhhhhhhHHHHhh
Confidence            3556667777777654443  223334 888999999 9988  88889999999999987 667787788999999999


Q ss_pred             cCCCCCccccccc-ccCCccEEEeccccccccChhhhccCCCCeEecccCcccccccccccCCCCCCEEEecCCCCCCcc
Q 037308          161 LSGCSKLKRLLEI-SSGNINWLFLRETAIEELPSSIERLLRLGHLDLSDCKRLKSLPSSLFKLKSLGVLNLGGCSNLQRL  239 (321)
Q Consensus       161 l~~~~~~~~~~~~-~~~~L~~L~l~~~~i~~l~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~  239 (321)
                      ++.|. +..+|.. ..-.|+.|.+++|+++.+|..++....|..||.+.|.+. .+|..++++.+|+.|.+..|+.. .+
T Consensus       128 ls~Nq-lS~lp~~lC~lpLkvli~sNNkl~~lp~~ig~~~tl~~ld~s~nei~-slpsql~~l~slr~l~vrRn~l~-~l  204 (722)
T KOG0532|consen  128 LSSNQ-LSHLPDGLCDLPLKVLIVSNNKLTSLPEEIGLLPTLAHLDVSKNEIQ-SLPSQLGYLTSLRDLNVRRNHLE-DL  204 (722)
T ss_pred             hccch-hhcCChhhhcCcceeEEEecCccccCCcccccchhHHHhhhhhhhhh-hchHHhhhHHHHHHHHHhhhhhh-hC
Confidence            99965 5555544 455899999999999999998998899999999998854 56778999999999999997654 45


Q ss_pred             ccccCCCCCCcEEEcccCCCcccchhhhccCCcCEEeccCCCCccc
Q 037308          240 PECLGQLSSPIILNLAKTNVERIPESIIQLFVLRYLLLSYSERIQS  285 (321)
Q Consensus       240 ~~~~~~~~~L~~L~l~~n~l~~l~~~l~~l~~L~~L~l~~n~~l~~  285 (321)
                      |+.++.+ .|..||+++|++..+|.+|.+++.|++|-|.+| -|+.
T Consensus       205 p~El~~L-pLi~lDfScNkis~iPv~fr~m~~Lq~l~LenN-PLqS  248 (722)
T KOG0532|consen  205 PEELCSL-PLIRLDFSCNKISYLPVDFRKMRHLQVLQLENN-PLQS  248 (722)
T ss_pred             CHHHhCC-ceeeeecccCceeecchhhhhhhhheeeeeccC-CCCC
Confidence            5666655 599999999999999999999999999999999 4444

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]

Probab=99.06  E-value=1.8e-10  Score=105.51  Aligned_cols=189  Identities=27%  Similarity=0.289  Sum_probs=106.1

Q ss_pred             EEecCCCC-CCCCCcCCcCceeEEeccCCcccccccCCCCCC-ChHhHHhhccccccccCCCCCCCCCCCCccEEEccCC
Q 037308           63 FHWHGYPL-KSLPSNLSAEKLVFLKVPYSDIEQLWNGEKHYS-NLNQIINATCNKLIAKTPNPTLMPHLNKLVILNLRGS  140 (321)
Q Consensus        63 l~l~~~~l-~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~l~-~L~~~l~l~~~~l~~~~~~~~~~~~l~~L~~L~l~~n  140 (321)
                      +....+.+ .........+.++.+++.++.+.+++....... +++. ++++.|.+. .++.  .+..++.|+.|++++|
T Consensus        98 l~~~~~~~~~~~~~~~~~~~l~~L~l~~n~i~~i~~~~~~~~~nL~~-L~l~~N~i~-~l~~--~~~~l~~L~~L~l~~N  173 (394)
T COG4886          98 LDLNLNRLRSNISELLELTNLTSLDLDNNNITDIPPLIGLLKSNLKE-LDLSDNKIE-SLPS--PLRNLPNLKNLDLSFN  173 (394)
T ss_pred             eeccccccccCchhhhcccceeEEecCCcccccCccccccchhhccc-ccccccchh-hhhh--hhhccccccccccCCc
Confidence            44444444 222222244566666666666666655555553 6666 666666666 5543  4566666666666666


Q ss_pred             CCCcccCccccCcccCcEEecCCCCCccccccc--ccCCccEEEeccccccccChhhhccCCCCeEecccCccccccccc
Q 037308          141 KSLKSLPSGIFNLEFLTKLDLSGCSKLKRLLEI--SSGNINWLFLRETAIEELPSSIERLLRLGHLDLSDCKRLKSLPSS  218 (321)
Q Consensus       141 ~~~~~~p~~l~~l~~L~~L~l~~~~~~~~~~~~--~~~~L~~L~l~~~~i~~l~~~~~~l~~L~~L~l~~n~~~~~~~~~  218 (321)
                      . +..+|...+..+.|+.|++++|. +..+|..  .+..|+.+.+++|.+.+.+..+..+..+..+.+..|.+. ..+..
T Consensus       174 ~-l~~l~~~~~~~~~L~~L~ls~N~-i~~l~~~~~~~~~L~~l~~~~N~~~~~~~~~~~~~~l~~l~l~~n~~~-~~~~~  250 (394)
T COG4886         174 D-LSDLPKLLSNLSNLNNLDLSGNK-ISDLPPEIELLSALEELDLSNNSIIELLSSLSNLKNLSGLELSNNKLE-DLPES  250 (394)
T ss_pred             h-hhhhhhhhhhhhhhhheeccCCc-cccCchhhhhhhhhhhhhhcCCcceecchhhhhcccccccccCCceee-eccch
Confidence            6 44555433356666666666643 3333332  344466666666655555555556666666665555533 22445


Q ss_pred             ccCCCCCCEEEecCCCCCCccccccCCCCCCcEEEcccCCCc
Q 037308          219 LFKLKSLGVLNLGGCSNLQRLPECLGQLSSPIILNLAKTNVE  260 (321)
Q Consensus       219 ~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~  260 (321)
                      ++.+++++.|++++|.+...- . ++...+++.|+++++.+.
T Consensus       251 ~~~l~~l~~L~~s~n~i~~i~-~-~~~~~~l~~L~~s~n~~~  290 (394)
T COG4886         251 IGNLSNLETLDLSNNQISSIS-S-LGSLTNLRELDLSGNSLS  290 (394)
T ss_pred             hccccccceeccccccccccc-c-ccccCccCEEeccCcccc
Confidence            556666666666665443332 2 556666666666666655

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]

Probab=99.05  E-value=2.5e-10  Score=104.68  Aligned_cols=176  Identities=30%  Similarity=0.382  Sum_probs=122.1

Q ss_pred             CcccEEEecCCCCCCCCCcCCcC--ceeEEeccCCcccccccCCCCCCChHhHHhhccccccccCCCCCCCCCCCCccEE
Q 037308           58 AEVKYFHWHGYPLKSLPSNLSAE--KLVFLKVPYSDIEQLWNGEKHYSNLNQIINATCNKLIAKTPNPTLMPHLNKLVIL  135 (321)
Q Consensus        58 ~~L~~l~l~~~~l~~~~~~~~l~--~L~~L~l~~~~l~~~~~~~~~l~~L~~~l~l~~~~l~~~~~~~~~~~~l~~L~~L  135 (321)
                      ..++.+++.++.+..++......  +|+.|++++|.+..++.....+++|+. ++++.|.+. .++.  .....+.|+.|
T Consensus       116 ~~l~~L~l~~n~i~~i~~~~~~~~~nL~~L~l~~N~i~~l~~~~~~l~~L~~-L~l~~N~l~-~l~~--~~~~~~~L~~L  191 (394)
T COG4886         116 TNLTSLDLDNNNITDIPPLIGLLKSNLKELDLSDNKIESLPSPLRNLPNLKN-LDLSFNDLS-DLPK--LLSNLSNLNNL  191 (394)
T ss_pred             cceeEEecCCcccccCccccccchhhcccccccccchhhhhhhhhccccccc-cccCCchhh-hhhh--hhhhhhhhhhe
Confidence            56778888888887777766443  788888888888777666777788888 888888887 6664  44477788888


Q ss_pred             EccCCCCCcccCccccCcccCcEEecCCCCCccccccc-ccCCccEEEeccccccccChhhhccCCCCeEecccCccccc
Q 037308          136 NLRGSKSLKSLPSGIFNLEFLTKLDLSGCSKLKRLLEI-SSGNINWLFLRETAIEELPSSIERLLRLGHLDLSDCKRLKS  214 (321)
Q Consensus       136 ~l~~n~~~~~~p~~l~~l~~L~~L~l~~~~~~~~~~~~-~~~~L~~L~l~~~~i~~l~~~~~~l~~L~~L~l~~n~~~~~  214 (321)
                      ++++|. +..+|........|+.+.++.|......... ...++..+.+.+|.+..++..+..++.++.|++++|.+...
T Consensus       192 ~ls~N~-i~~l~~~~~~~~~L~~l~~~~N~~~~~~~~~~~~~~l~~l~l~~n~~~~~~~~~~~l~~l~~L~~s~n~i~~i  270 (394)
T COG4886         192 DLSGNK-ISDLPPEIELLSALEELDLSNNSIIELLSSLSNLKNLSGLELSNNKLEDLPESIGNLSNLETLDLSNNQISSI  270 (394)
T ss_pred             eccCCc-cccCchhhhhhhhhhhhhhcCCcceecchhhhhcccccccccCCceeeeccchhccccccceecccccccccc
Confidence            888877 5566664445566788888776433332222 35566667777777777666677777788888888775543


Q ss_pred             ccccccCCCCCCEEEecCCCCCCccc
Q 037308          215 LPSSLFKLKSLGVLNLGGCSNLQRLP  240 (321)
Q Consensus       215 ~~~~~~~l~~L~~L~l~~~~~~~~~~  240 (321)
                      ..  ++.+.+++.|+++++......+
T Consensus       271 ~~--~~~~~~l~~L~~s~n~~~~~~~  294 (394)
T COG4886         271 SS--LGSLTNLRELDLSGNSLSNALP  294 (394)
T ss_pred             cc--ccccCccCEEeccCccccccch
Confidence            33  6777888888888776654443

>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]

Probab=99.05  E-value=2.8e-11  Score=106.55  Aligned_cols=182  Identities=15%  Similarity=0.107  Sum_probs=114.3

Q ss_pred             hhhcCCCCceEEEEeecCCCCccccceeccCCCCc-CcccEEEecCCCCCCCCCcC---CcCceeEEeccCCcccc--cc
Q 037308           23 STFTKMPKLRFLKFYSSSFNGENKCKVSYLQDPRF-AEVKYFHWHGYPLKSLPSNL---SAEKLVFLKVPYSDIEQ--LW   96 (321)
Q Consensus        23 ~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~l~~-~~L~~l~l~~~~l~~~~~~~---~l~~L~~L~l~~~~l~~--~~   96 (321)
                      .....+++++.||+++|.|+    .+.....-... |+|+.|+++.|.+....+..   .+++|+.|.+++|.++.  +-
T Consensus       140 ~~~k~~~~v~~LdLS~NL~~----nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~~lK~L~l~~CGls~k~V~  215 (505)
T KOG3207|consen  140 EYSKILPNVRDLDLSRNLFH----NWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLSHLKQLVLNSCGLSWKDVQ  215 (505)
T ss_pred             hhhhhCCcceeecchhhhHH----hHHHHHHHHHhcccchhcccccccccCCccccchhhhhhhheEEeccCCCCHHHHH
Confidence            35566888888888888765    23333333344 88888888888765543321   68888888888888762  12


Q ss_pred             cCCCCCCChHhHHhhcccc-ccccCCCCCCCCCCCCccEEEccCCCCCcccC-ccccCcccCcEEecCCCCCcc--cccc
Q 037308           97 NGEKHYSNLNQIINATCNK-LIAKTPNPTLMPHLNKLVILNLRGSKSLKSLP-SGIFNLEFLTKLDLSGCSKLK--RLLE  172 (321)
Q Consensus        97 ~~~~~l~~L~~~l~l~~~~-l~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p-~~l~~l~~L~~L~l~~~~~~~--~~~~  172 (321)
                      .-...+|.++. +++..|. +. ....  ...-++.|+.|||++|.+..... ...+.++.|..|+++.|...+  .++.
T Consensus       216 ~~~~~fPsl~~-L~L~~N~~~~-~~~~--~~~i~~~L~~LdLs~N~li~~~~~~~~~~l~~L~~Lnls~tgi~si~~~d~  291 (505)
T KOG3207|consen  216 WILLTFPSLEV-LYLEANEIIL-IKAT--STKILQTLQELDLSNNNLIDFDQGYKVGTLPGLNQLNLSSTGIASIAEPDV  291 (505)
T ss_pred             HHHHhCCcHHH-hhhhcccccc-eecc--hhhhhhHHhhccccCCcccccccccccccccchhhhhccccCcchhcCCCc
Confidence            23357788888 8886663 22 2221  45567788888888887543321 225567778888777754322  1111


Q ss_pred             ------cccCCccEEEeccccccccCh--hhhccCCCCeEecccCccc
Q 037308          173 ------ISSGNINWLFLRETAIEELPS--SIERLLRLGHLDLSDCKRL  212 (321)
Q Consensus       173 ------~~~~~L~~L~l~~~~i~~l~~--~~~~l~~L~~L~l~~n~~~  212 (321)
                            ..+++|++|++..|.+.+++.  .+..+++|+.|.+..|.+.
T Consensus       292 ~s~~kt~~f~kL~~L~i~~N~I~~w~sl~~l~~l~nlk~l~~~~n~ln  339 (505)
T KOG3207|consen  292 ESLDKTHTFPKLEYLNISENNIRDWRSLNHLRTLENLKHLRITLNYLN  339 (505)
T ss_pred             cchhhhcccccceeeecccCccccccccchhhccchhhhhhccccccc
Confidence                  136677777777777766552  3555667777776666654

>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]

Probab=99.01  E-value=1.2e-10  Score=98.19  Aligned_cols=102  Identities=25%  Similarity=0.241  Sum_probs=52.3

Q ss_pred             cCCccEEEeccccccccChhhhccCCCCeEecccCcccccccccccCCCCCCEEEecCCCCCCccccccCCCCCCcEEEc
Q 037308          175 SGNINWLFLRETAIEELPSSIERLLRLGHLDLSDCKRLKSLPSSLFKLKSLGVLNLGGCSNLQRLPECLGQLSSPIILNL  254 (321)
Q Consensus       175 ~~~L~~L~l~~~~i~~l~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l  254 (321)
                      .+.++.|+++.|++..+.. +..+++|+.||+++|.+. ....+...+.+.+.|.+++|.+.+.  .+++.+-+|..||+
T Consensus       306 ~Pkir~L~lS~N~i~~v~n-La~L~~L~~LDLS~N~Ls-~~~Gwh~KLGNIKtL~La~N~iE~L--SGL~KLYSLvnLDl  381 (490)
T KOG1259|consen  306 APKLRRLILSQNRIRTVQN-LAELPQLQLLDLSGNLLA-ECVGWHLKLGNIKTLKLAQNKIETL--SGLRKLYSLVNLDL  381 (490)
T ss_pred             ccceeEEeccccceeeehh-hhhcccceEeecccchhH-hhhhhHhhhcCEeeeehhhhhHhhh--hhhHhhhhheeccc
Confidence            3444444444455544443 445555555555555422 2333334455555555555443222  23444555666666


Q ss_pred             ccCCCcccch--hhhccCCcCEEeccCC
Q 037308          255 AKTNVERIPE--SIIQLFVLRYLLLSYS  280 (321)
Q Consensus       255 ~~n~l~~l~~--~l~~l~~L~~L~l~~n  280 (321)
                      ++|++..+.+  .++++|+|+.+.+.+|
T Consensus       382 ~~N~Ie~ldeV~~IG~LPCLE~l~L~~N  409 (490)
T KOG1259|consen  382 SSNQIEELDEVNHIGNLPCLETLRLTGN  409 (490)
T ss_pred             cccchhhHHHhcccccccHHHHHhhcCC
Confidence            6666654432  4556666666666666

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=99.01  E-value=2.4e-10  Score=91.49  Aligned_cols=36  Identities=28%  Similarity=0.283  Sum_probs=14.0

Q ss_pred             hhccCCCCeEecccCccccccc---ccccCCCCCCEEEe
Q 037308          195 IERLLRLGHLDLSDCKRLKSLP---SSLFKLKSLGVLNL  230 (321)
Q Consensus       195 ~~~l~~L~~L~l~~n~~~~~~~---~~~~~l~~L~~L~l  230 (321)
                      +..+++|+.|++.+|.+.....   ..+..+|+|+.||-
T Consensus       109 L~~l~~L~~L~L~~NPv~~~~~YR~~vi~~lP~Lk~LD~  147 (175)
T PF14580_consen  109 LSSLPKLRVLSLEGNPVCEKKNYRLFVIYKLPSLKVLDG  147 (175)
T ss_dssp             GGG-TT--EEE-TT-GGGGSTTHHHHHHHH-TT-SEETT
T ss_pred             HHcCCCcceeeccCCcccchhhHHHHHHHHcChhheeCC
Confidence            4455556666666655443211   13445566666654

>PLN03150 hypothetical protein; Provisional

Probab=98.99  E-value=1.5e-09  Score=104.58  Aligned_cols=110  Identities=28%  Similarity=0.363  Sum_probs=98.5

Q ss_pred             ccEEEeccccccc-cChhhhccCCCCeEecccCcccccccccccCCCCCCEEEecCCCCCCccccccCCCCCCcEEEccc
Q 037308          178 INWLFLRETAIEE-LPSSIERLLRLGHLDLSDCKRLKSLPSSLFKLKSLGVLNLGGCSNLQRLPECLGQLSSPIILNLAK  256 (321)
Q Consensus       178 L~~L~l~~~~i~~-l~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~  256 (321)
                      ++.|++++|.+.+ +|..+..+++|+.|++++|.+.+.+|..++.+++|+.|++++|++.+.+|..++.+++|+.|++++
T Consensus       420 v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~  499 (623)
T PLN03150        420 IDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNG  499 (623)
T ss_pred             EEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcC
Confidence            7789999999985 788899999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCc-ccchhhhcc-CCcCEEeccCCCCccccc
Q 037308          257 TNVE-RIPESIIQL-FVLRYLLLSYSERIQSVS  287 (321)
Q Consensus       257 n~l~-~l~~~l~~l-~~L~~L~l~~n~~l~~~~  287 (321)
                      |.++ .+|..+... .++..+++.+|+.+...|
T Consensus       500 N~l~g~iP~~l~~~~~~~~~l~~~~N~~lc~~p  532 (623)
T PLN03150        500 NSLSGRVPAALGGRLLHRASFNFTDNAGLCGIP  532 (623)
T ss_pred             CcccccCChHHhhccccCceEEecCCccccCCC
Confidence            9998 889877653 467789999998777655

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=98.96  E-value=7e-10  Score=88.76  Aligned_cols=126  Identities=25%  Similarity=0.188  Sum_probs=35.2

Q ss_pred             ccCcccCcEEecCCCCCccccccc--ccCCccEEEeccccccccChhhhccCCCCeEecccCcccccccccccCCCCCCE
Q 037308          150 IFNLEFLTKLDLSGCSKLKRLLEI--SSGNINWLFLRETAIEELPSSIERLLRLGHLDLSDCKRLKSLPSSLFKLKSLGV  227 (321)
Q Consensus       150 l~~l~~L~~L~l~~~~~~~~~~~~--~~~~L~~L~l~~~~i~~l~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~  227 (321)
                      +.+..+++.|++.+|.. ..+...  .+.+|+.|++++|.++.++ ++..++.|+.|++++|.+....+.....+++|+.
T Consensus        15 ~~n~~~~~~L~L~~n~I-~~Ie~L~~~l~~L~~L~Ls~N~I~~l~-~l~~L~~L~~L~L~~N~I~~i~~~l~~~lp~L~~   92 (175)
T PF14580_consen   15 YNNPVKLRELNLRGNQI-STIENLGATLDKLEVLDLSNNQITKLE-GLPGLPRLKTLDLSNNRISSISEGLDKNLPNLQE   92 (175)
T ss_dssp             ----------------------S--TT-TT--EEE-TTS--S--T-T----TT--EEE--SS---S-CHHHHHH-TT--E
T ss_pred             ccccccccccccccccc-ccccchhhhhcCCCEEECCCCCCcccc-CccChhhhhhcccCCCCCCccccchHHhCCcCCE
Confidence            34555666777776442 222211  2456666666666666665 3555666666666666654432211134566666


Q ss_pred             EEecCCCCCC--ccccccCCCCCCcEEEcccCCCcccch----hhhccCCcCEEecc
Q 037308          228 LNLGGCSNLQ--RLPECLGQLSSPIILNLAKTNVERIPE----SIIQLFVLRYLLLS  278 (321)
Q Consensus       228 L~l~~~~~~~--~~~~~~~~~~~L~~L~l~~n~l~~l~~----~l~~l~~L~~L~l~  278 (321)
                      |++++|.+..  .+ ..+..+++|+.|++.+|.++.-+.    .+..+|+|+.||-.
T Consensus        93 L~L~~N~I~~l~~l-~~L~~l~~L~~L~L~~NPv~~~~~YR~~vi~~lP~Lk~LD~~  148 (175)
T PF14580_consen   93 LYLSNNKISDLNEL-EPLSSLPKLRVLSLEGNPVCEKKNYRLFVIYKLPSLKVLDGQ  148 (175)
T ss_dssp             EE-TTS---SCCCC-GGGGG-TT--EEE-TT-GGGGSTTHHHHHHHH-TT-SEETTE
T ss_pred             EECcCCcCCChHHh-HHHHcCCCcceeeccCCcccchhhHHHHHHHHcChhheeCCE
Confidence            6666655432  12 344456666666666666653321    23455666555443

>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]

Probab=98.94  E-value=1e-10  Score=103.05  Aligned_cols=86  Identities=19%  Similarity=0.121  Sum_probs=33.7

Q ss_pred             cCCccEEEeccccccc--cChhhhccCCCCeEecccCcccccccccccCCCCCCEEEecCCCCCCcc-ccccCCCCCCcE
Q 037308          175 SGNINWLFLRETAIEE--LPSSIERLLRLGHLDLSDCKRLKSLPSSLFKLKSLGVLNLGGCSNLQRL-PECLGQLSSPII  251 (321)
Q Consensus       175 ~~~L~~L~l~~~~i~~--l~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~-~~~~~~~~~L~~  251 (321)
                      ++.|+.|.+++|+++.  +...+...|+|+.|++..|...........-+..|+.|++++|++...- -...+.++.|+.
T Consensus       196 l~~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~~~~~~~~~l~~L~~  275 (505)
T KOG3207|consen  196 LSHLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLIDFDQGYKVGTLPGLNQ  275 (505)
T ss_pred             hhhhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCcccccccccccccccchhh
Confidence            4444445554444442  2222233344444444444322211112223334444444444433221 112333444444


Q ss_pred             EEcccCCCc
Q 037308          252 LNLAKTNVE  260 (321)
Q Consensus       252 L~l~~n~l~  260 (321)
                      |+++.|.+.
T Consensus       276 Lnls~tgi~  284 (505)
T KOG3207|consen  276 LNLSSTGIA  284 (505)
T ss_pred             hhccccCcc
Confidence            444444444

>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]

Probab=98.94  E-value=1.2e-10  Score=98.11  Aligned_cols=200  Identities=17%  Similarity=0.067  Sum_probs=135.1

Q ss_pred             CcccEEEecCCCCCCCCCcC-CcCceeEEeccCCcccccccCCCCCCChHhHHhhcccccc-ccCCCCCCCCCCCCccEE
Q 037308           58 AEVKYFHWHGYPLKSLPSNL-SAEKLVFLKVPYSDIEQLWNGEKHYSNLNQIINATCNKLI-AKTPNPTLMPHLNKLVIL  135 (321)
Q Consensus        58 ~~L~~l~l~~~~l~~~~~~~-~l~~L~~L~l~~~~l~~~~~~~~~l~~L~~~l~l~~~~l~-~~~~~~~~~~~l~~L~~L  135 (321)
                      ++|..+.++.|.-..+.+.. .-|.|..+.+.+..++..+. +-....+.. ...+..... |....  ...-++.|+.+
T Consensus       214 ~~l~~~~~s~~~~~~i~~~~~~kptl~t~~v~~s~~~~~~~-l~pe~~~~D-~~~~E~~t~~G~~~~--~~dTWq~Ltel  289 (490)
T KOG1259|consen  214 RNLKTLKFSALSTENIVDIELLKPTLQTICVHNTTIQDVPS-LLPETILAD-PSGSEPSTSNGSALV--SADTWQELTEL  289 (490)
T ss_pred             hhhheeeeeccchhheeceeecCchhheeeeeccccccccc-ccchhhhcC-ccCCCCCccCCceEE--ecchHhhhhhc
Confidence            77777777777766555443 56777888776666654321 111111111 111111111 12111  34557789999


Q ss_pred             EccCCCCCcccCccccCcccCcEEecCCCCCcccccccccCCccEEEeccccccccChhhhccCCCCeEecccCcccccc
Q 037308          136 NLRGSKSLKSLPSGIFNLEFLTKLDLSGCSKLKRLLEISSGNINWLFLRETAIEELPSSIERLLRLGHLDLSDCKRLKSL  215 (321)
Q Consensus       136 ~l~~n~~~~~~p~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~i~~l~~~~~~l~~L~~L~l~~n~~~~~~  215 (321)
                      |+|+|. +..+-.+..-.+.++.|+++.|.....-.-..+++|+.||+++|.++++..|-..+-++++|.+++|.+-+ +
T Consensus       290 DLS~N~-I~~iDESvKL~Pkir~L~lS~N~i~~v~nLa~L~~L~~LDLS~N~Ls~~~Gwh~KLGNIKtL~La~N~iE~-L  367 (490)
T KOG1259|consen  290 DLSGNL-ITQIDESVKLAPKLRRLILSQNRIRTVQNLAELPQLQLLDLSGNLLAECVGWHLKLGNIKTLKLAQNKIET-L  367 (490)
T ss_pred             cccccc-hhhhhhhhhhccceeEEeccccceeeehhhhhcccceEeecccchhHhhhhhHhhhcCEeeeehhhhhHhh-h
Confidence            999987 55555556668899999999976554333335889999999999999988776677889999999987543 2


Q ss_pred             cccccCCCCCCEEEecCCCCCCc-cccccCCCCCCcEEEcccCCCcccch
Q 037308          216 PSSLFKLKSLGVLNLGGCSNLQR-LPECLGQLSSPIILNLAKTNVERIPE  264 (321)
Q Consensus       216 ~~~~~~l~~L~~L~l~~~~~~~~-~~~~~~~~~~L~~L~l~~n~l~~l~~  264 (321)
                       ..+..+-+|.+||+++|++... --..++.+|-|+.+.+.+|.+..+++
T Consensus       368 -SGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl~~~vd  416 (490)
T KOG1259|consen  368 -SGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNPLAGSVD  416 (490)
T ss_pred             -hhhHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCCccccch
Confidence             3466788999999999877542 12477889999999999999886553

>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]

Probab=98.86  E-value=1.1e-10  Score=100.09  Aligned_cols=177  Identities=18%  Similarity=0.078  Sum_probs=126.1

Q ss_pred             CCCCCCCccEEEccCCCCCcccCc----cccCcccCcEEecCCCCCcc----cccc-----------cccCCccEEEecc
Q 037308          125 LMPHLNKLVILNLRGSKSLKSLPS----GIFNLEFLTKLDLSGCSKLK----RLLE-----------ISSGNINWLFLRE  185 (321)
Q Consensus       125 ~~~~l~~L~~L~l~~n~~~~~~p~----~l~~l~~L~~L~l~~~~~~~----~~~~-----------~~~~~L~~L~l~~  185 (321)
                      .+.++++|++|+||+|.+....+.    .+..++.|++|.+.+|....    .+..           ...+.|++++...
T Consensus        87 aL~~~~~L~~ldLSDNA~G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~r  166 (382)
T KOG1909|consen   87 ALLGCPKLQKLDLSDNAFGPKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGR  166 (382)
T ss_pred             HHhcCCceeEeeccccccCccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeec
Confidence            456677999999999996544333    34568999999999985421    1000           1467899999999


Q ss_pred             ccccccC-----hhhhccCCCCeEecccCccccc----ccccccCCCCCCEEEecCCCCCCc----cccccCCCCCCcEE
Q 037308          186 TAIEELP-----SSIERLLRLGHLDLSDCKRLKS----LPSSLFKLKSLGVLNLGGCSNLQR----LPECLGQLSSPIIL  252 (321)
Q Consensus       186 ~~i~~l~-----~~~~~l~~L~~L~l~~n~~~~~----~~~~~~~l~~L~~L~l~~~~~~~~----~~~~~~~~~~L~~L  252 (321)
                      |++...+     ..+...+.|+.+.++.|.+...    ....+.+++.|+.|||.+|-+...    +...++.+++|+.+
T Consensus       167 Nrlen~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El  246 (382)
T KOG1909|consen  167 NRLENGGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLREL  246 (382)
T ss_pred             cccccccHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheee
Confidence            9998744     3466678999999999887542    334578999999999999866532    45677888999999


Q ss_pred             EcccCCCc-----ccchhh-hccCCcCEEeccCCCCccc-cc--------CccccccccccccCc
Q 037308          253 NLAKTNVE-----RIPESI-IQLFVLRYLLLSYSERIQS-VS--------LPLARGILEDTQRSP  302 (321)
Q Consensus       253 ~l~~n~l~-----~l~~~l-~~l~~L~~L~l~~n~~l~~-~~--------~~~~l~~l~~~~~~~  302 (321)
                      +++.|.++     .+-..+ ...|.|+.|.+.+| .++. --        --+.+..|.+.++..
T Consensus       247 ~l~dcll~~~Ga~a~~~al~~~~p~L~vl~l~gN-eIt~da~~~la~~~~ek~dL~kLnLngN~l  310 (382)
T KOG1909|consen  247 NLGDCLLENEGAIAFVDALKESAPSLEVLELAGN-EITRDAALALAACMAEKPDLEKLNLNGNRL  310 (382)
T ss_pred             cccccccccccHHHHHHHHhccCCCCceeccCcc-hhHHHHHHHHHHHHhcchhhHHhcCCcccc
Confidence            99999987     222333 34789999999999 4422 11        124556666666544

>PLN03150 hypothetical protein; Provisional

Probab=98.73  E-value=2.7e-08  Score=96.08  Aligned_cols=105  Identities=32%  Similarity=0.407  Sum_probs=59.7

Q ss_pred             ccEEEccCCCCCcccCccccCcccCcEEecCCCCCcccccccccCCccEEEecccccc-ccChhhhccCCCCeEecccCc
Q 037308          132 LVILNLRGSKSLKSLPSGIFNLEFLTKLDLSGCSKLKRLLEISSGNINWLFLRETAIE-ELPSSIERLLRLGHLDLSDCK  210 (321)
Q Consensus       132 L~~L~l~~n~~~~~~p~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~i~-~l~~~~~~l~~L~~L~l~~n~  210 (321)
                      ++.|+|++|.+.+.+|..++.+++|+.|++++                      |.+. .+|..+..+++|+.|++++|.
T Consensus       420 v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~----------------------N~l~g~iP~~~~~l~~L~~LdLs~N~  477 (623)
T PLN03150        420 IDGLGLDNQGLRGFIPNDISKLRHLQSINLSG----------------------NSIRGNIPPSLGSITSLEVLDLSYNS  477 (623)
T ss_pred             EEEEECCCCCccccCCHHHhCCCCCCEEECCC----------------------CcccCcCChHHhCCCCCCEEECCCCC
Confidence            44555555555555555555555555555555                      4444 245455666666666666666


Q ss_pred             ccccccccccCCCCCCEEEecCCCCCCccccccCCC-CCCcEEEcccCC
Q 037308          211 RLKSLPSSLFKLKSLGVLNLGGCSNLQRLPECLGQL-SSPIILNLAKTN  258 (321)
Q Consensus       211 ~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~-~~L~~L~l~~n~  258 (321)
                      +.+.+|..++.+++|+.|++++|++.+.+|..+... .++..+++.+|.
T Consensus       478 lsg~iP~~l~~L~~L~~L~Ls~N~l~g~iP~~l~~~~~~~~~l~~~~N~  526 (623)
T PLN03150        478 FNGSIPESLGQLTSLRILNLNGNSLSGRVPAALGGRLLHRASFNFTDNA  526 (623)
T ss_pred             CCCCCchHHhcCCCCCEEECcCCcccccCChHHhhccccCceEEecCCc
Confidence            666666666666666666666666666666555432 344555665554

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=98.71  E-value=1.2e-08  Score=67.11  Aligned_cols=57  Identities=30%  Similarity=0.395  Sum_probs=26.2

Q ss_pred             CccEEEeccccccccCh-hhhccCCCCeEecccCcccccccccccCCCCCCEEEecCC
Q 037308          177 NINWLFLRETAIEELPS-SIERLLRLGHLDLSDCKRLKSLPSSLFKLKSLGVLNLGGC  233 (321)
Q Consensus       177 ~L~~L~l~~~~i~~l~~-~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~~  233 (321)
                      +|++|++++|.++.+|. .+.++++|++|++++|.+....+..+.++++|++|++++|
T Consensus         2 ~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N   59 (61)
T PF13855_consen    2 NLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNN   59 (61)
T ss_dssp             TESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSS
T ss_pred             cCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCC
Confidence            34445555554444442 3444444444444444444333344444444444444443

...

>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]

Probab=98.71  E-value=1.6e-09  Score=99.80  Aligned_cols=214  Identities=21%  Similarity=0.227  Sum_probs=124.5

Q ss_pred             CCCceEEEEeecCCCCccccceeccCCCCc-CcccEEEecCCCCCCCCC-cCCcCceeEEeccCCcccccccCCCCCCCh
Q 037308           28 MPKLRFLKFYSSSFNGENKCKVSYLQDPRF-AEVKYFHWHGYPLKSLPS-NLSAEKLVFLKVPYSDIEQLWNGEKHYSNL  105 (321)
Q Consensus        28 l~~L~~L~l~~n~~~~~~~~~~~~~~~l~~-~~L~~l~l~~~~l~~~~~-~~~l~~L~~L~l~~~~l~~~~~~~~~l~~L  105 (321)
                      +..++.+.+..|.+.       .....+.. .+|..+++.+|.+..+.. .-.+++|++|++++|.|.++ .++..++.|
T Consensus        71 l~~l~~l~l~~n~i~-------~~~~~l~~~~~l~~l~l~~n~i~~i~~~l~~~~~L~~L~ls~N~I~~i-~~l~~l~~L  142 (414)
T KOG0531|consen   71 LTSLKELNLRQNLIA-------KILNHLSKLKSLEALDLYDNKIEKIENLLSSLVNLQVLDLSFNKITKL-EGLSTLTLL  142 (414)
T ss_pred             hHhHHhhccchhhhh-------hhhcccccccceeeeeccccchhhcccchhhhhcchheeccccccccc-cchhhccch
Confidence            345555556555422       11222344 788888888888888877 44788888888888888875 455667778


Q ss_pred             HhHHhhccccccccCCCCCCCCCCCCccEEEccCCCCCcccCcc-ccCcccCcEEecCCCCCcccccccccCCccEEEec
Q 037308          106 NQIINATCNKLIAKTPNPTLMPHLNKLVILNLRGSKSLKSLPSG-IFNLEFLTKLDLSGCSKLKRLLEISSGNINWLFLR  184 (321)
Q Consensus       106 ~~~l~l~~~~l~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~-l~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~  184 (321)
                      .. |++.+|.++ .+.   .+..+..|+.+++++|.+. .+... ...+.+++.+.+..|.....-.......+..+++.
T Consensus       143 ~~-L~l~~N~i~-~~~---~~~~l~~L~~l~l~~n~i~-~ie~~~~~~~~~l~~l~l~~n~i~~i~~~~~~~~l~~~~l~  216 (414)
T KOG0531|consen  143 KE-LNLSGNLIS-DIS---GLESLKSLKLLDLSYNRIV-DIENDELSELISLEELDLGGNSIREIEGLDLLKKLVLLSLL  216 (414)
T ss_pred             hh-heeccCcch-hcc---CCccchhhhcccCCcchhh-hhhhhhhhhccchHHHhccCCchhcccchHHHHHHHHhhcc
Confidence            77 888888887 665   4666888888888888743 33321 35677787777777554332222123444445566


Q ss_pred             cccccccChhhhccC--CCCeEecccCcccccccccccCCCCCCEEEecCCCCCCccccccCCCCCCcEEEcccCCC
Q 037308          185 ETAIEELPSSIERLL--RLGHLDLSDCKRLKSLPSSLFKLKSLGVLNLGGCSNLQRLPECLGQLSSPIILNLAKTNV  259 (321)
Q Consensus       185 ~~~i~~l~~~~~~l~--~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l  259 (321)
                      .|.++.+.. +..+.  .|+.+++.+|.+.. .+..+..+..+..|++..+.+...  ..+...+.+..+....+.+
T Consensus       217 ~n~i~~~~~-l~~~~~~~L~~l~l~~n~i~~-~~~~~~~~~~l~~l~~~~n~~~~~--~~~~~~~~~~~~~~~~~~~  289 (414)
T KOG0531|consen  217 DNKISKLEG-LNELVMLHLRELYLSGNRISR-SPEGLENLKNLPVLDLSSNRISNL--EGLERLPKLSELWLNDNKL  289 (414)
T ss_pred             cccceeccC-cccchhHHHHHHhcccCcccc-ccccccccccccccchhhcccccc--ccccccchHHHhccCcchh
Confidence            666554432 11122  26666666665332 223344556666666665544332  1223333444444444443

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=98.69  E-value=2e-08  Score=66.07  Aligned_cols=61  Identities=28%  Similarity=0.352  Sum_probs=53.9

Q ss_pred             CCCCeEecccCcccccccccccCCCCCCEEEecCCCCCCccccccCCCCCCcEEEcccCCC
Q 037308          199 LRLGHLDLSDCKRLKSLPSSLFKLKSLGVLNLGGCSNLQRLPECLGQLSSPIILNLAKTNV  259 (321)
Q Consensus       199 ~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l  259 (321)
                      ++|++|++++|++....+..+.++++|+.|++++|.+...-+.+|.++++|+.|++++|++
T Consensus         1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l   61 (61)
T PF13855_consen    1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL   61 (61)
T ss_dssp             TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred             CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence            4689999999988877777899999999999999888777777899999999999999975

...

>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]

Probab=98.68  E-value=1.1e-09  Score=100.80  Aligned_cols=211  Identities=24%  Similarity=0.198  Sum_probs=130.8

Q ss_pred             CcccEEEecCCCCCCCCC-cCCcCceeEEeccCCcccccccCCCCCCChHhHHhhccccccccCCCCCCCCCCCCccEEE
Q 037308           58 AEVKYFHWHGYPLKSLPS-NLSAEKLVFLKVPYSDIEQLWNGEKHYSNLNQIINATCNKLIAKTPNPTLMPHLNKLVILN  136 (321)
Q Consensus        58 ~~L~~l~l~~~~l~~~~~-~~~l~~L~~L~l~~~~l~~~~~~~~~l~~L~~~l~l~~~~l~~~~~~~~~~~~l~~L~~L~  136 (321)
                      ..++.+.+..+.+..+.. ...+.+++.+++.+|.|..+......+++|.. ++++.|.|+ .+.   .+..+..|+.|+
T Consensus        72 ~~l~~l~l~~n~i~~~~~~l~~~~~l~~l~l~~n~i~~i~~~l~~~~~L~~-L~ls~N~I~-~i~---~l~~l~~L~~L~  146 (414)
T KOG0531|consen   72 TSLKELNLRQNLIAKILNHLSKLKSLEALDLYDNKIEKIENLLSSLVNLQV-LDLSFNKIT-KLE---GLSTLTLLKELN  146 (414)
T ss_pred             HhHHhhccchhhhhhhhcccccccceeeeeccccchhhcccchhhhhcchh-eeccccccc-ccc---chhhccchhhhe
Confidence            556666677776666434 23678888888888888876554677788888 888888887 665   466667788888


Q ss_pred             ccCCCCCcccCccccCcccCcEEecCCCCCccccc--ccccCCccEEEeccccccccChhhhccCCCCeEecccCccccc
Q 037308          137 LRGSKSLKSLPSGIFNLEFLTKLDLSGCSKLKRLL--EISSGNINWLFLRETAIEELPSSIERLLRLGHLDLSDCKRLKS  214 (321)
Q Consensus       137 l~~n~~~~~~p~~l~~l~~L~~L~l~~~~~~~~~~--~~~~~~L~~L~l~~~~i~~l~~~~~~l~~L~~L~l~~n~~~~~  214 (321)
                      +++|. +..+.. +..+++|+.++++.|.....-+  .....+++.+++.+|.+..+.. +..+..+..+++..|.+...
T Consensus       147 l~~N~-i~~~~~-~~~l~~L~~l~l~~n~i~~ie~~~~~~~~~l~~l~l~~n~i~~i~~-~~~~~~l~~~~l~~n~i~~~  223 (414)
T KOG0531|consen  147 LSGNL-ISDISG-LESLKSLKLLDLSYNRIVDIENDELSELISLEELDLGGNSIREIEG-LDLLKKLVLLSLLDNKISKL  223 (414)
T ss_pred             eccCc-chhccC-CccchhhhcccCCcchhhhhhhhhhhhccchHHHhccCCchhcccc-hHHHHHHHHhhcccccceec
Confidence            88887 444443 5557788888888765433333  1346677777787777776542 33333444445666554432


Q ss_pred             ccccccCCCC--CCEEEecCCCCCCccccccCCCCCCcEEEcccCCCcccchhhhccCCcCEEeccCC
Q 037308          215 LPSSLFKLKS--LGVLNLGGCSNLQRLPECLGQLSSPIILNLAKTNVERIPESIIQLFVLRYLLLSYS  280 (321)
Q Consensus       215 ~~~~~~~l~~--L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~l~~~l~~l~~L~~L~l~~n  280 (321)
                      -+  +..+..  |+.+++.+|.+.. .++.+..+..+..|++..|++..+. .+...+.+..+....+
T Consensus       224 ~~--l~~~~~~~L~~l~l~~n~i~~-~~~~~~~~~~l~~l~~~~n~~~~~~-~~~~~~~~~~~~~~~~  287 (414)
T KOG0531|consen  224 EG--LNELVMLHLRELYLSGNRISR-SPEGLENLKNLPVLDLSSNRISNLE-GLERLPKLSELWLNDN  287 (414)
T ss_pred             cC--cccchhHHHHHHhcccCcccc-ccccccccccccccchhhccccccc-cccccchHHHhccCcc
Confidence            11  222333  6777777765433 2245566777888888888776443 2333444444555555

>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]

Probab=98.66  E-value=1.8e-08  Score=99.72  Aligned_cols=126  Identities=17%  Similarity=0.229  Sum_probs=89.3

Q ss_pred             CCCceEEEEeecCCCCccccceeccCCCCcCcccEEEecCCC--CCCCCCcC--CcCceeEEeccCCc-ccccccCCCCC
Q 037308           28 MPKLRFLKFYSSSFNGENKCKVSYLQDPRFAEVKYFHWHGYP--LKSLPSNL--SAEKLVFLKVPYSD-IEQLWNGEKHY  102 (321)
Q Consensus        28 l~~L~~L~l~~n~~~~~~~~~~~~~~~l~~~~L~~l~l~~~~--l~~~~~~~--~l~~L~~L~l~~~~-l~~~~~~~~~l  102 (321)
                      ....++..+.+|.+       ...+....+++|+.|-+.++.  +..++..+  .++.|+.||+++|. +..+|...+.+
T Consensus       522 ~~~~rr~s~~~~~~-------~~~~~~~~~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~L  594 (889)
T KOG4658|consen  522 WNSVRRMSLMNNKI-------EHIAGSSENPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGEL  594 (889)
T ss_pred             hhheeEEEEeccch-------hhccCCCCCCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhh
Confidence            35667777777641       233334444678888887775  56666643  68888888888654 56777777888


Q ss_pred             CChHhHHhhccccccccCCCCCCCCCCCCccEEEccCCCCCcccCccccCcccCcEEecCCC
Q 037308          103 SNLNQIINATCNKLIAKTPNPTLMPHLNKLVILNLRGSKSLKSLPSGIFNLEFLTKLDLSGC  164 (321)
Q Consensus       103 ~~L~~~l~l~~~~l~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~l~~l~~L~~L~l~~~  164 (321)
                      -+|+. |++++..++ .+|.  .+..+.+|.+|++..+.....+|.....+++|++|.+..-
T Consensus       595 i~Lry-L~L~~t~I~-~LP~--~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s  652 (889)
T KOG4658|consen  595 VHLRY-LDLSDTGIS-HLPS--GLGNLKKLIYLNLEVTGRLESIPGILLELQSLRVLRLPRS  652 (889)
T ss_pred             hhhhc-ccccCCCcc-ccch--HHHHHHhhheeccccccccccccchhhhcccccEEEeecc
Confidence            88887 888888888 8877  7888888888888877655555665555888888877653

>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]

Probab=98.66  E-value=1.1e-08  Score=101.16  Aligned_cols=80  Identities=23%  Similarity=0.354  Sum_probs=48.5

Q ss_pred             CcccEEEecCCC-CCCCCCcC-CcCceeEEeccCCcccccccCCCCCCChHhHHhhccccccccCCCCCCCCCCCCccEE
Q 037308           58 AEVKYFHWHGYP-LKSLPSNL-SAEKLVFLKVPYSDIEQLWNGEKHYSNLNQIINATCNKLIAKTPNPTLMPHLNKLVIL  135 (321)
Q Consensus        58 ~~L~~l~l~~~~-l~~~~~~~-~l~~L~~L~l~~~~l~~~~~~~~~l~~L~~~l~l~~~~l~~~~~~~~~~~~l~~L~~L  135 (321)
                      +.|+.||+++|. +..+|..+ .+-+|++|++++..+..+|.++..+..|.+ |++..+.....++.  ....+++|++|
T Consensus       571 ~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t~I~~LP~~l~~Lk~L~~-Lnl~~~~~l~~~~~--i~~~L~~Lr~L  647 (889)
T KOG4658|consen  571 PLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDTGISHLPSGLGNLKKLIY-LNLEVTGRLESIPG--ILLELQSLRVL  647 (889)
T ss_pred             cceEEEECCCCCccCcCChHHhhhhhhhcccccCCCccccchHHHHHHhhhe-eccccccccccccc--hhhhcccccEE
Confidence            667777776553 55666665 466667777777777666666666666666 66654443313332  44456666666


Q ss_pred             EccCC
Q 037308          136 NLRGS  140 (321)
Q Consensus       136 ~l~~n  140 (321)
                      .+...
T Consensus       648 ~l~~s  652 (889)
T KOG4658|consen  648 RLPRS  652 (889)
T ss_pred             Eeecc
Confidence            66553

>PRK15386 type III secretion protein GogB; Provisional

Probab=98.49  E-value=7.2e-07  Score=80.20  Aligned_cols=70  Identities=20%  Similarity=0.303  Sum_probs=38.7

Q ss_pred             CCCccEEEccCCCCCcccCccccCcccCcEEecCCCCCcccccccccCCccEEEeccc-cccccChhhhccCCCCeEecc
Q 037308          129 LNKLVILNLRGSKSLKSLPSGIFNLEFLTKLDLSGCSKLKRLLEISSGNINWLFLRET-AIEELPSSIERLLRLGHLDLS  207 (321)
Q Consensus       129 l~~L~~L~l~~n~~~~~~p~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~-~i~~l~~~~~~l~~L~~L~l~  207 (321)
                      +.+++.|++++|. +..+|.   -..+|+.|++++|..+..+|...+++|+.|++++| .+..+|.      +|+.|++.
T Consensus        51 ~~~l~~L~Is~c~-L~sLP~---LP~sLtsL~Lsnc~nLtsLP~~LP~nLe~L~Ls~Cs~L~sLP~------sLe~L~L~  120 (426)
T PRK15386         51 ARASGRLYIKDCD-IESLPV---LPNELTEITIENCNNLTTLPGSIPEGLEKLTVCHCPEISGLPE------SVRSLEIK  120 (426)
T ss_pred             hcCCCEEEeCCCC-CcccCC---CCCCCcEEEccCCCCcccCCchhhhhhhheEccCccccccccc------ccceEEeC
Confidence            4556666666664 444452   12356666666666665555444556666666665 4444443      35555554


Q ss_pred             c
Q 037308          208 D  208 (321)
Q Consensus       208 ~  208 (321)
                      .
T Consensus       121 ~  121 (426)
T PRK15386        121 G  121 (426)
T ss_pred             C
Confidence            4

>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]

Probab=98.42  E-value=4.7e-09  Score=88.58  Aligned_cols=82  Identities=23%  Similarity=0.165  Sum_probs=36.2

Q ss_pred             eeEEeccCCcccc--cccCCCCCCChHhHHhhccccccccCCCCCCCCCCCCccEEEccCCCCCcccC--ccccCcccCc
Q 037308           82 LVFLKVPYSDIEQ--LWNGEKHYSNLNQIINATCNKLIAKTPNPTLMPHLNKLVILNLRGSKSLKSLP--SGIFNLEFLT  157 (321)
Q Consensus        82 L~~L~l~~~~l~~--~~~~~~~l~~L~~~l~l~~~~l~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p--~~l~~l~~L~  157 (321)
                      |+++|++...|+.  +..-+..+.+|+. +.+.++.+.+.+..  .++.-..|+.|+++++.-.++..  -.++.|++|.
T Consensus       187 lq~lDLS~s~it~stl~~iLs~C~kLk~-lSlEg~~LdD~I~~--~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~  263 (419)
T KOG2120|consen  187 LQHLDLSNSVITVSTLHGILSQCSKLKN-LSLEGLRLDDPIVN--TIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLD  263 (419)
T ss_pred             hHHhhcchhheeHHHHHHHHHHHHhhhh-ccccccccCcHHHH--HHhccccceeeccccccccchhHHHHHHHhhhhHh
Confidence            5555555544432  1122233333444 44444444422222  34455555666665554222211  1244555666


Q ss_pred             EEecCCCCC
Q 037308          158 KLDLSGCSK  166 (321)
Q Consensus       158 ~L~l~~~~~  166 (321)
                      .|++++|..
T Consensus       264 ~LNlsWc~l  272 (419)
T KOG2120|consen  264 ELNLSWCFL  272 (419)
T ss_pred             hcCchHhhc
Confidence            666665543

>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]

Probab=98.35  E-value=7.7e-08  Score=80.37  Aligned_cols=254  Identities=16%  Similarity=0.114  Sum_probs=154.0

Q ss_pred             eEEEEeecCchhhhccChhhhcCCCCceEEEEeecCCCCccccceeccCCCCc-CcccEEEecCCCCCC----CCC----
Q 037308            5 IEGICLDMSTVKEIRLNLSTFTKMPKLRFLKFYSSSFNGENKCKVSYLQDPRF-AEVKYFHWHGYPLKS----LPS----   75 (321)
Q Consensus         5 ~~~~~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~l~~-~~L~~l~l~~~~l~~----~~~----   75 (321)
                      |.+..+.+..-+++-.....+..+..+..++|++|.+......+  ....++. .+|+..+++.-....    ++.    
T Consensus         6 I~gk~lKl~T~eDvk~v~eel~~~d~~~evdLSGNtigtEA~e~--l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~   83 (388)
T COG5238           6 IGGKKLKLETKEDVKGVVEELEMMDELVEVDLSGNTIGTEAMEE--LCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVM   83 (388)
T ss_pred             cCCceeeccccchhhHHHHHHHhhcceeEEeccCCcccHHHHHH--HHHHHhhhcceeEeehhhhhhcccHHHHHHHHHH
Confidence            44444444444443333344555788999999999865443322  2233445 777777776543322    221    


Q ss_pred             ----cCCcCceeEEeccCCcccccccCCCCCCChHhHHhhccccccccCCCC--CCCCCCCCccEEEccCCCCCcccCc-
Q 037308           76 ----NLSAEKLVFLKVPYSDIEQLWNGEKHYSNLNQIINATCNKLIAKTPNP--TLMPHLNKLVILNLRGSKSLKSLPS-  148 (321)
Q Consensus        76 ----~~~l~~L~~L~l~~~~l~~~~~~~~~l~~L~~~l~l~~~~l~~~~~~~--~~~~~l~~L~~L~l~~n~~~~~~p~-  148 (321)
                          ..++|+|+..++|+|.+..                        +.|.+  ..+.+-..|++|.+++|. .+.+.. 
T Consensus        84 Ll~aLlkcp~l~~v~LSDNAfg~------------------------~~~e~L~d~is~~t~l~HL~l~NnG-lGp~aG~  138 (388)
T COG5238          84 LLKALLKCPRLQKVDLSDNAFGS------------------------EFPEELGDLISSSTDLVHLKLNNNG-LGPIAGG  138 (388)
T ss_pred             HHHHHhcCCcceeeeccccccCc------------------------ccchHHHHHHhcCCCceeEEeecCC-CCccchh
Confidence                1267777777777777652                        11110  134556778888888887 333221 


Q ss_pred             cc-------------cCcccCcEEecCCCCCccccccc------ccCCccEEEeccccccc--cC----hhhhccCCCCe
Q 037308          149 GI-------------FNLEFLTKLDLSGCSKLKRLLEI------SSGNINWLFLRETAIEE--LP----SSIERLLRLGH  203 (321)
Q Consensus       149 ~l-------------~~l~~L~~L~l~~~~~~~~~~~~------~~~~L~~L~l~~~~i~~--l~----~~~~~l~~L~~  203 (321)
                      -+             ..-+.|+.++..+|.........      ...+|+.+.+.+|+|+.  +.    .++..+.+|+.
T Consensus       139 rigkal~~la~nKKaa~kp~Le~vicgrNRlengs~~~~a~~l~sh~~lk~vki~qNgIrpegv~~L~~~gl~y~~~Lev  218 (388)
T COG5238         139 RIGKALFHLAYNKKAADKPKLEVVICGRNRLENGSKELSAALLESHENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEV  218 (388)
T ss_pred             HHHHHHHHHHHHhhhccCCCceEEEeccchhccCcHHHHHHHHHhhcCceeEEeeecCcCcchhHHHHHHHHHHhCccee
Confidence            11             23467888888887643221110      23579999999999984  22    23567789999


Q ss_pred             EecccCccccc----ccccccCCCCCCEEEecCCCCCCcccccc------CCCCCCcEEEcccCCCc-------ccchhh
Q 037308          204 LDLSDCKRLKS----LPSSLFKLKSLGVLNLGGCSNLQRLPECL------GQLSSPIILNLAKTNVE-------RIPESI  266 (321)
Q Consensus       204 L~l~~n~~~~~----~~~~~~~l~~L~~L~l~~~~~~~~~~~~~------~~~~~L~~L~l~~n~l~-------~l~~~l  266 (321)
                      ||+.+|.++-.    +...+..|+.|+.|++.+|-+......++      ...++|+.|....|...       .++...
T Consensus       219 LDlqDNtft~~gS~~La~al~~W~~lrEL~lnDClls~~G~~~v~~~f~e~~~p~l~~L~~~Yne~~~~~i~~~~l~~~e  298 (388)
T COG5238         219 LDLQDNTFTLEGSRYLADALCEWNLLRELRLNDCLLSNEGVKSVLRRFNEKFVPNLMPLPGDYNERRGGIILDISLNEFE  298 (388)
T ss_pred             eeccccchhhhhHHHHHHHhcccchhhhccccchhhccccHHHHHHHhhhhcCCCccccccchhhhcCceeeeechhhhh
Confidence            99999887642    33456788889999999997765432211      13577888888877643       233221


Q ss_pred             -hccCCcCEEeccCCCCcccc
Q 037308          267 -IQLFVLRYLLLSYSERIQSV  286 (321)
Q Consensus       267 -~~l~~L~~L~l~~n~~l~~~  286 (321)
                       ..+|-|..+.+.|| ++++.
T Consensus       299 ~~~~p~L~~le~ngN-r~~E~  318 (388)
T COG5238         299 QDAVPLLVDLERNGN-RIKEL  318 (388)
T ss_pred             hcccHHHHHHHHccC-cchhH
Confidence             45777888888888 66554

>PRK15386 type III secretion protein GogB; Provisional

Probab=98.33  E-value=1.7e-06  Score=77.81  Aligned_cols=129  Identities=20%  Similarity=0.334  Sum_probs=76.0

Q ss_pred             cCcccCcEEecCCCCCcccccccccCCccEEEecc-ccccccChhhhccCCCCeEecccCcccccccccccCCCCCCEEE
Q 037308          151 FNLEFLTKLDLSGCSKLKRLLEISSGNINWLFLRE-TAIEELPSSIERLLRLGHLDLSDCKRLKSLPSSLFKLKSLGVLN  229 (321)
Q Consensus       151 ~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~-~~i~~l~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~  229 (321)
                      ..+.+++.|++++| .+..+|.. +++|+.|.+++ +.++.+|..+  .++|++|++++|.....+|.      +|+.|+
T Consensus        49 ~~~~~l~~L~Is~c-~L~sLP~L-P~sLtsL~Lsnc~nLtsLP~~L--P~nLe~L~Ls~Cs~L~sLP~------sLe~L~  118 (426)
T PRK15386         49 EEARASGRLYIKDC-DIESLPVL-PNELTEITIENCNNLTTLPGSI--PEGLEKLTVCHCPEISGLPE------SVRSLE  118 (426)
T ss_pred             HHhcCCCEEEeCCC-CCcccCCC-CCCCcEEEccCCCCcccCCchh--hhhhhheEccCccccccccc------ccceEE
Confidence            34688999999998 67777754 77899999987 4555677544  35899999998854444553      466666


Q ss_pred             ecCCCC--CCccccccCCCCCCcEEEcccCC-Cc--ccchhhhcc-CCcCEEeccCCCCccccc--Cccccccccccc
Q 037308          230 LGGCSN--LQRLPECLGQLSSPIILNLAKTN-VE--RIPESIIQL-FVLRYLLLSYSERIQSVS--LPLARGILEDTQ  299 (321)
Q Consensus       230 l~~~~~--~~~~~~~~~~~~~L~~L~l~~n~-l~--~l~~~l~~l-~~L~~L~l~~n~~l~~~~--~~~~l~~l~~~~  299 (321)
                      +..+..  ...+|.      +|+.|.+.+++ ..  .+|.   .+ ++|++|++.+|..+ .+|  +|.+++.|++..
T Consensus       119 L~~n~~~~L~~LPs------sLk~L~I~~~n~~~~~~lp~---~LPsSLk~L~Is~c~~i-~LP~~LP~SLk~L~ls~  186 (426)
T PRK15386        119 IKGSATDSIKNVPN------GLTSLSINSYNPENQARIDN---LISPSLKTLSLTGCSNI-ILPEKLPESLQSITLHI  186 (426)
T ss_pred             eCCCCCcccccCcc------hHhheecccccccccccccc---ccCCcccEEEecCCCcc-cCcccccccCcEEEecc
Confidence            654322  333443      34455543221 11  1111   12 35666666666433 233  556666665543

>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]

Probab=98.27  E-value=1.8e-08  Score=85.13  Aligned_cols=173  Identities=19%  Similarity=0.153  Sum_probs=89.3

Q ss_pred             CccEEEccCCCCCc-ccCccccCcccCcEEecCCCCCccccccc--ccCCccEEEeccc-cccccC--hhhhccCCCCeE
Q 037308          131 KLVILNLRGSKSLK-SLPSGIFNLEFLTKLDLSGCSKLKRLLEI--SSGNINWLFLRET-AIEELP--SSIERLLRLGHL  204 (321)
Q Consensus       131 ~L~~L~l~~n~~~~-~~p~~l~~l~~L~~L~l~~~~~~~~~~~~--~~~~L~~L~l~~~-~i~~l~--~~~~~l~~L~~L  204 (321)
                      .|++||+++..+.. .+...++.|.+|+.|.+.++.....+...  ...+|..|+++.+ ++++..  .-+..++.|..|
T Consensus       186 Rlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~L  265 (419)
T KOG2120|consen  186 RLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDEL  265 (419)
T ss_pred             hhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhhc
Confidence            46777777655432 23334556666666666664433322211  2456666666554 344322  235666777777


Q ss_pred             ecccCccccccccc-cc-CCCCCCEEEecCCCCC---CccccccCCCCCCcEEEcccC-CCc-ccchhhhccCCcCEEec
Q 037308          205 DLSDCKRLKSLPSS-LF-KLKSLGVLNLGGCSNL---QRLPECLGQLSSPIILNLAKT-NVE-RIPESIIQLFVLRYLLL  277 (321)
Q Consensus       205 ~l~~n~~~~~~~~~-~~-~l~~L~~L~l~~~~~~---~~~~~~~~~~~~L~~L~l~~n-~l~-~l~~~l~~l~~L~~L~l  277 (321)
                      ++++|......-.+ +. --++|..|+++++...   ..+..-...+++|.+||++.| .++ .+-..+..++.|++|.+
T Consensus       266 NlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~lSl  345 (419)
T KOG2120|consen  266 NLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQHLSL  345 (419)
T ss_pred             CchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHHHhcchheeeeh
Confidence            77776654422111 11 1245666666665211   122223345667777777665 334 33345566667777777


Q ss_pred             cCCCCccc-----ccCccccccccccccCcc
Q 037308          278 SYSERIQS-----VSLPLARGILEDTQRSPH  303 (321)
Q Consensus       278 ~~n~~l~~-----~~~~~~l~~l~~~~~~~~  303 (321)
                      +.|-.+-.     +.--+++.+|++-+|-+.
T Consensus       346 sRCY~i~p~~~~~l~s~psl~yLdv~g~vsd  376 (419)
T KOG2120|consen  346 SRCYDIIPETLLELNSKPSLVYLDVFGCVSD  376 (419)
T ss_pred             hhhcCCChHHeeeeccCcceEEEEeccccCc
Confidence            76644311     112345666666665554

>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]

Probab=98.21  E-value=2.2e-08  Score=93.72  Aligned_cols=120  Identities=31%  Similarity=0.279  Sum_probs=56.3

Q ss_pred             HhhccccccccCCCCCCCCCCCCccEEEccCCCCCcccCccccCcccCcEEecCCCCCccccccc--ccCCccEEEeccc
Q 037308          109 INATCNKLIAKTPNPTLMPHLNKLVILNLRGSKSLKSLPSGIFNLEFLTKLDLSGCSKLKRLLEI--SSGNINWLFLRET  186 (321)
Q Consensus       109 l~l~~~~l~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~l~~l~~L~~L~l~~~~~~~~~~~~--~~~~L~~L~l~~~  186 (321)
                      .++++|.++ .+..  .+.-++.+++|+|+.|.+....  .+..++.|++||++.|. +..+|..  .-..|+.|.+++|
T Consensus       169 a~fsyN~L~-~mD~--SLqll~ale~LnLshNk~~~v~--~Lr~l~~LkhLDlsyN~-L~~vp~l~~~gc~L~~L~lrnN  242 (1096)
T KOG1859|consen  169 ASFSYNRLV-LMDE--SLQLLPALESLNLSHNKFTKVD--NLRRLPKLKHLDLSYNC-LRHVPQLSMVGCKLQLLNLRNN  242 (1096)
T ss_pred             hhcchhhHH-hHHH--HHHHHHHhhhhccchhhhhhhH--HHHhcccccccccccch-hccccccchhhhhheeeeeccc
Confidence            455555555 4433  4555555566666655533322  24455555566655532 3333322  1223555555555


Q ss_pred             cccccChhhhccCCCCeEecccCccccccc-ccccCCCCCCEEEecCCCC
Q 037308          187 AIEELPSSIERLLRLGHLDLSDCKRLKSLP-SSLFKLKSLGVLNLGGCSN  235 (321)
Q Consensus       187 ~i~~l~~~~~~l~~L~~L~l~~n~~~~~~~-~~~~~l~~L~~L~l~~~~~  235 (321)
                      .++.+- ++.++.+|+.||+++|-+.+.-. .-+..+..|+.|.+.+|++
T Consensus       243 ~l~tL~-gie~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl  291 (1096)
T KOG1859|consen  243 ALTTLR-GIENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPL  291 (1096)
T ss_pred             HHHhhh-hHHhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCcc
Confidence            555443 24455555555555544333211 1122334444555555433

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=98.19  E-value=2.1e-06  Score=52.09  Aligned_cols=40  Identities=25%  Similarity=0.313  Sum_probs=25.9

Q ss_pred             CCCcEEEcccCCCcccchhhhccCCcCEEeccCCCCccccc
Q 037308          247 SSPIILNLAKTNVERIPESIIQLFVLRYLLLSYSERIQSVS  287 (321)
Q Consensus       247 ~~L~~L~l~~n~l~~l~~~l~~l~~L~~L~l~~n~~l~~~~  287 (321)
                      ++|+.|++++|+++++|..++.+++|+.|++++| .+++++
T Consensus         1 ~~L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~N-~i~~i~   40 (44)
T PF12799_consen    1 KNLEELDLSNNQITDLPPELSNLPNLETLNLSNN-PISDIS   40 (44)
T ss_dssp             TT-SEEEETSSS-SSHGGHGTTCTTSSEEEETSS-CCSBEG
T ss_pred             CcceEEEccCCCCcccCchHhCCCCCCEEEecCC-CCCCCc
Confidence            3567777777777777766777777777777777 566543

...

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]

Probab=98.14  E-value=8.9e-07  Score=85.78  Aligned_cols=151  Identities=25%  Similarity=0.237  Sum_probs=105.4

Q ss_pred             CCCccEEEccCCCCC-cccCccc-cCcccCcEEecCCCCCcc-ccccc--ccCCccEEEeccccccccChhhhccCCCCe
Q 037308          129 LNKLVILNLRGSKSL-KSLPSGI-FNLEFLTKLDLSGCSKLK-RLLEI--SSGNINWLFLRETAIEELPSSIERLLRLGH  203 (321)
Q Consensus       129 l~~L~~L~l~~n~~~-~~~p~~l-~~l~~L~~L~l~~~~~~~-~~~~~--~~~~L~~L~l~~~~i~~l~~~~~~l~~L~~  203 (321)
                      -.+|++|++++.... ...|..+ ..+|+|+.|.+.+-.... .+...  .+++|..||++++.++.+ .+++++++|+.
T Consensus       121 r~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl-~GIS~LknLq~  199 (699)
T KOG3665|consen  121 RQNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL-SGISRLKNLQV  199 (699)
T ss_pred             HHhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc-HHHhccccHHH
Confidence            368999999886532 2233222 348999999988733221 11111  599999999999999998 56889999999


Q ss_pred             EecccCcccc-cccccccCCCCCCEEEecCCCCCCcc--c----cccCCCCCCcEEEcccCCCc-c-cchhhhccCCcCE
Q 037308          204 LDLSDCKRLK-SLPSSLFKLKSLGVLNLGGCSNLQRL--P----ECLGQLSSPIILNLAKTNVE-R-IPESIIQLFVLRY  274 (321)
Q Consensus       204 L~l~~n~~~~-~~~~~~~~l~~L~~L~l~~~~~~~~~--~----~~~~~~~~L~~L~l~~n~l~-~-l~~~l~~l~~L~~  274 (321)
                      |.+.+-.+.. ..-..+.++++|+.||+|........  .    +.-..+|.||.||.|++.+. . +...+...|+|+.
T Consensus       200 L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~~~~le~ll~sH~~L~~  279 (699)
T KOG3665|consen  200 LSMRNLEFESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDINEEILEELLNSHPNLQQ  279 (699)
T ss_pred             HhccCCCCCchhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcchhHHHHHHHHHhCccHhh
Confidence            9888755443 11235779999999999975443321  1    23345899999999999988 3 3345577889988


Q ss_pred             EeccCC
Q 037308          275 LLLSYS  280 (321)
Q Consensus       275 L~l~~n  280 (321)
                      +.+-+|
T Consensus       280 i~~~~~  285 (699)
T KOG3665|consen  280 IAALDC  285 (699)
T ss_pred             hhhhhh
Confidence            877665

>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]

Probab=98.13  E-value=6.1e-08  Score=90.88  Aligned_cols=121  Identities=19%  Similarity=0.114  Sum_probs=54.2

Q ss_pred             eEEeccCCcccccccCCCCCCChHhHHhhccccccccCCCCCCCCCCCCccEEEccCCCCCcccCcc-ccCcccCcEEec
Q 037308           83 VFLKVPYSDIEQLWNGEKHYSNLNQIINATCNKLIAKTPNPTLMPHLNKLVILNLRGSKSLKSLPSG-IFNLEFLTKLDL  161 (321)
Q Consensus        83 ~~L~l~~~~l~~~~~~~~~l~~L~~~l~l~~~~l~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~-l~~l~~L~~L~l  161 (321)
                      ...+.++|++..+...+.-++.++. |++++|++. .+.   .+..+++|++|||++|. +..+|.. ..++. |..|++
T Consensus       167 ~~a~fsyN~L~~mD~SLqll~ale~-LnLshNk~~-~v~---~Lr~l~~LkhLDlsyN~-L~~vp~l~~~gc~-L~~L~l  239 (1096)
T KOG1859|consen  167 ATASFSYNRLVLMDESLQLLPALES-LNLSHNKFT-KVD---NLRRLPKLKHLDLSYNC-LRHVPQLSMVGCK-LQLLNL  239 (1096)
T ss_pred             hhhhcchhhHHhHHHHHHHHHHhhh-hccchhhhh-hhH---HHHhcccccccccccch-hccccccchhhhh-heeeee
Confidence            3334444444444444444444555 555555555 333   34555555555555554 3333321 11222 555555


Q ss_pred             CCCCCcccccccccCCccEEEeccccccccCh--hhhccCCCCeEecccCc
Q 037308          162 SGCSKLKRLLEISSGNINWLFLRETAIEELPS--SIERLLRLGHLDLSDCK  210 (321)
Q Consensus       162 ~~~~~~~~~~~~~~~~L~~L~l~~~~i~~l~~--~~~~l~~L~~L~l~~n~  210 (321)
                      .+|...+-..-..+.+|+.||++.|-+.+...  -++.+..|++|.+.+|.
T Consensus       240 rnN~l~tL~gie~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNP  290 (1096)
T KOG1859|consen  240 RNNALTTLRGIENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNP  290 (1096)
T ss_pred             cccHHHhhhhHHhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCc
Confidence            55432221111124455555555555554321  13444455555555554

>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]

Probab=97.92  E-value=9.8e-07  Score=66.45  Aligned_cols=86  Identities=23%  Similarity=0.215  Sum_probs=37.4

Q ss_pred             CCCeEecccCcccccccccccCCCCCCEEEecCCCCCCccccccCCCCCCcEEEcccCCCcccchhhhccCCcCEEeccC
Q 037308          200 RLGHLDLSDCKRLKSLPSSLFKLKSLGVLNLGGCSNLQRLPECLGQLSSPIILNLAKTNVERIPESIIQLFVLRYLLLSY  279 (321)
Q Consensus       200 ~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~l~~~l~~l~~L~~L~l~~  279 (321)
                      .|+..++++|.+....+..-..++..+.+++.+|. ...+|+.+..++.|+.|+++.|.+...|..+..+.++.+|+..+
T Consensus        54 el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~ne-isdvPeE~Aam~aLr~lNl~~N~l~~~p~vi~~L~~l~~Lds~~  132 (177)
T KOG4579|consen   54 ELTKISLSDNGFKKFPKKFTIKFPTATTLNLANNE-ISDVPEELAAMPALRSLNLRFNPLNAEPRVIAPLIKLDMLDSPE  132 (177)
T ss_pred             eEEEEecccchhhhCCHHHhhccchhhhhhcchhh-hhhchHHHhhhHHhhhcccccCccccchHHHHHHHhHHHhcCCC
Confidence            33444444444332222222233344444444422 23344445555555555555555554444444444444454444


Q ss_pred             CCCccccc
Q 037308          280 SERIQSVS  287 (321)
Q Consensus       280 n~~l~~~~  287 (321)
                      | .+..++
T Consensus       133 n-a~~eid  139 (177)
T KOG4579|consen  133 N-ARAEID  139 (177)
T ss_pred             C-ccccCc
Confidence            4 443333

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=97.85  E-value=2.1e-05  Score=47.69  Aligned_cols=36  Identities=31%  Similarity=0.394  Sum_probs=23.2

Q ss_pred             CccEEEeccccccccChhhhccCCCCeEecccCccc
Q 037308          177 NINWLFLRETAIEELPSSIERLLRLGHLDLSDCKRL  212 (321)
Q Consensus       177 ~L~~L~l~~~~i~~l~~~~~~l~~L~~L~l~~n~~~  212 (321)
                      +|++|++++|.++++|..+.++++|+.|++++|.+.
T Consensus         2 ~L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~N~i~   37 (44)
T PF12799_consen    2 NLEELDLSNNQITDLPPELSNLPNLETLNLSNNPIS   37 (44)
T ss_dssp             T-SEEEETSSS-SSHGGHGTTCTTSSEEEETSSCCS
T ss_pred             cceEEEccCCCCcccCchHhCCCCCCEEEecCCCCC
Confidence            566677777777777666667777777777776654

...

>KOG2982 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.83  E-value=2.6e-06  Score=72.32  Aligned_cols=79  Identities=19%  Similarity=0.155  Sum_probs=41.9

Q ss_pred             cCCccEEEeccccccccC--hhhhccCCCCeEecccCcccc-cccccccCCCCCCEEEecCCCCCCccc------cccCC
Q 037308          175 SGNINWLFLRETAIEELP--SSIERLLRLGHLDLSDCKRLK-SLPSSLFKLKSLGVLNLGGCSNLQRLP------ECLGQ  245 (321)
Q Consensus       175 ~~~L~~L~l~~~~i~~l~--~~~~~l~~L~~L~l~~n~~~~-~~~~~~~~l~~L~~L~l~~~~~~~~~~------~~~~~  245 (321)
                      ++++..+.+..|.+....  .+....+.+-.|+++.+++.+ ..-+.+.+++.|+.|.++++++...+.      --++.
T Consensus       198 Fpnv~sv~v~e~PlK~~s~ek~se~~p~~~~LnL~~~~idswasvD~Ln~f~~l~dlRv~~~Pl~d~l~~~err~llIaR  277 (418)
T KOG2982|consen  198 FPNVNSVFVCEGPLKTESSEKGSEPFPSLSCLNLGANNIDSWASVDALNGFPQLVDLRVSENPLSDPLRGGERRFLLIAR  277 (418)
T ss_pred             cccchheeeecCcccchhhcccCCCCCcchhhhhcccccccHHHHHHHcCCchhheeeccCCcccccccCCcceEEEEee
Confidence            556666666666555433  233444555566666655432 222345666667777766665543221      12345


Q ss_pred             CCCCcEEE
Q 037308          246 LSSPIILN  253 (321)
Q Consensus       246 ~~~L~~L~  253 (321)
                      +++++.|+
T Consensus       278 L~~v~vLN  285 (418)
T KOG2982|consen  278 LTKVQVLN  285 (418)
T ss_pred             ccceEEec
Confidence            56666654

>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]

Probab=97.74  E-value=2.8e-05  Score=65.36  Aligned_cols=14  Identities=14%  Similarity=0.256  Sum_probs=8.1

Q ss_pred             CChHhHHhhcccccc
Q 037308          103 SNLNQIINATCNKLI  117 (321)
Q Consensus       103 ~~L~~~l~l~~~~l~  117 (321)
                      ..+.+ +++++|.|.
T Consensus        30 d~~~e-vdLSGNtig   43 (388)
T COG5238          30 DELVE-VDLSGNTIG   43 (388)
T ss_pred             cceeE-EeccCCccc
Confidence            33444 666766665

>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]

Probab=97.62  E-value=5.6e-05  Score=60.85  Aligned_cols=104  Identities=17%  Similarity=0.147  Sum_probs=63.5

Q ss_pred             CcccEEEecCCCCCCCCCcCCcCceeEEeccCCcccccccCC-CCCCChHhHHhhccccccccCCCCCCCCCCCCccEEE
Q 037308           58 AEVKYFHWHGYPLKSLPSNLSAEKLVFLKVPYSDIEQLWNGE-KHYSNLNQIINATCNKLIAKTPNPTLMPHLNKLVILN  136 (321)
Q Consensus        58 ~~L~~l~l~~~~l~~~~~~~~l~~L~~L~l~~~~l~~~~~~~-~~l~~L~~~l~l~~~~l~~~~~~~~~~~~l~~L~~L~  136 (321)
                      .....+|+.+|.+..++..-.++.|.+|.+.+|+|+.+...+ ..+|++.. |.+..|.+. ++.....+..+++|++|.
T Consensus        42 d~~d~iDLtdNdl~~l~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~-L~LtnNsi~-~l~dl~pLa~~p~L~~Lt  119 (233)
T KOG1644|consen   42 DQFDAIDLTDNDLRKLDNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKT-LILTNNSIQ-ELGDLDPLASCPKLEYLT  119 (233)
T ss_pred             cccceecccccchhhcccCCCccccceEEecCCcceeeccchhhhccccce-EEecCcchh-hhhhcchhccCCccceee
Confidence            556677777777776666557778888888888887765544 34455666 667666666 444333456667777777


Q ss_pred             ccCCCCCcccC---ccccCcccCcEEecCC
Q 037308          137 LRGSKSLKSLP---SGIFNLEFLTKLDLSG  163 (321)
Q Consensus       137 l~~n~~~~~~p---~~l~~l~~L~~L~l~~  163 (321)
                      +-+|.....--   -.+.++++|++||+.+
T Consensus       120 ll~Npv~~k~~YR~yvl~klp~l~~LDF~k  149 (233)
T KOG1644|consen  120 LLGNPVEHKKNYRLYVLYKLPSLRTLDFQK  149 (233)
T ss_pred             ecCCchhcccCceeEEEEecCcceEeehhh
Confidence            76665322110   1234556666666654

>KOG4341 consensus F-box protein containing LRR [General function prediction only]

Probab=97.60  E-value=1.6e-06  Score=76.58  Aligned_cols=257  Identities=17%  Similarity=0.200  Sum_probs=143.0

Q ss_pred             hhhcCCCCceEEEEeecCCCCccccceeccCCC-Cc-CcccEEEecCCC-CCCCCCc--C-CcCceeEEeccCCc-ccc-
Q 037308           23 STFTKMPKLRFLKFYSSSFNGENKCKVSYLQDP-RF-AEVKYFHWHGYP-LKSLPSN--L-SAEKLVFLKVPYSD-IEQ-   94 (321)
Q Consensus        23 ~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~l-~~-~~L~~l~l~~~~-l~~~~~~--~-~l~~L~~L~l~~~~-l~~-   94 (321)
                      .....+|++++|.+.++..     ........+ ++ ++|+++++..|. ++...-.  . ++++|++++++.|. +++ 
T Consensus       158 t~~~~CpnIehL~l~gc~~-----iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~kL~~lNlSwc~qi~~~  232 (483)
T KOG4341|consen  158 TFASNCPNIEHLALYGCKK-----ITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEGCRKLKYLNLSWCPQISGN  232 (483)
T ss_pred             HHhhhCCchhhhhhhccee-----ccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHhhhhHHHhhhccCchhhcC
Confidence            3455688998888877640     111111222 23 888888888754 3322111  1 68888888888764 332 


Q ss_pred             -cccCCCCCCChHhHHhh-cccccccc-CCCCCCCCCCCCccEEEccCCCCCcccC--ccccCcccCcEEecCCCCCccc
Q 037308           95 -LWNGEKHYSNLNQIINA-TCNKLIAK-TPNPTLMPHLNKLVILNLRGSKSLKSLP--SGIFNLEFLTKLDLSGCSKLKR  169 (321)
Q Consensus        95 -~~~~~~~l~~L~~~l~l-~~~~l~~~-~~~~~~~~~l~~L~~L~l~~n~~~~~~p--~~l~~l~~L~~L~l~~~~~~~~  169 (321)
                       +.........++. +.. +|-....+ +.-  .-.++..+.++++..|..++...  ..-..+.+|+.++.+.|..++.
T Consensus       233 gv~~~~rG~~~l~~-~~~kGC~e~~le~l~~--~~~~~~~i~~lnl~~c~~lTD~~~~~i~~~c~~lq~l~~s~~t~~~d  309 (483)
T KOG4341|consen  233 GVQALQRGCKELEK-LSLKGCLELELEALLK--AAAYCLEILKLNLQHCNQLTDEDLWLIACGCHALQVLCYSSCTDITD  309 (483)
T ss_pred             cchHHhccchhhhh-hhhcccccccHHHHHH--HhccChHhhccchhhhccccchHHHHHhhhhhHhhhhcccCCCCCch
Confidence             0011111222333 222 11111100 000  11234445555555554332211  1112456666776666665443


Q ss_pred             cccc----ccCCccEEEecccc-ccc--cChhhhccCCCCeEecccCccccc--ccccccCCCCCCEEEecCCCCCCcc-
Q 037308          170 LLEI----SSGNINWLFLRETA-IEE--LPSSIERLLRLGHLDLSDCKRLKS--LPSSLFKLKSLGVLNLGGCSNLQRL-  239 (321)
Q Consensus       170 ~~~~----~~~~L~~L~l~~~~-i~~--l~~~~~~l~~L~~L~l~~n~~~~~--~~~~~~~l~~L~~L~l~~~~~~~~~-  239 (321)
                      .+-.    ...+|++|-+..+. +++  +...-.+.+.|+.+++..+....+  +...-.+++.|+.+.+++|..++.- 
T Consensus       310 ~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~sls~~C~~lr~lslshce~itD~g  389 (483)
T KOG4341|consen  310 EVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDGTLASLSRNCPRLRVLSLSHCELITDEG  389 (483)
T ss_pred             HHHHHHhcCCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhhhHhhhccCCchhccCChhhhhhhhhhh
Confidence            3322    35667777666553 222  222234567888888888775543  2233347889999999988665432 


Q ss_pred             ----ccccCCCCCCcEEEcccCCCc--ccchhhhccCCcCEEeccCCCCccccc
Q 037308          240 ----PECLGQLSSPIILNLAKTNVE--RIPESIIQLFVLRYLLLSYSERIQSVS  287 (321)
Q Consensus       240 ----~~~~~~~~~L~~L~l~~n~l~--~l~~~l~~l~~L~~L~l~~n~~l~~~~  287 (321)
                          ...-+.+..|+.+-++++.++  ...+.+..+++|+.+++-+|..+.+-+
T Consensus       390 i~~l~~~~c~~~~l~~lEL~n~p~i~d~~Le~l~~c~~Leri~l~~~q~vtk~~  443 (483)
T KOG4341|consen  390 IRHLSSSSCSLEGLEVLELDNCPLITDATLEHLSICRNLERIELIDCQDVTKEA  443 (483)
T ss_pred             hhhhhhccccccccceeeecCCCCchHHHHHHHhhCcccceeeeechhhhhhhh
Confidence                234456788999999999876  444677889999999999998776544

>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]

Probab=97.59  E-value=9.9e-05  Score=59.44  Aligned_cols=51  Identities=31%  Similarity=0.266  Sum_probs=23.0

Q ss_pred             HhhccccccccCCCCCCCCCCCCccEEEccCCCCCcccCccccCcccCcEEecCC
Q 037308          109 INATCNKLIAKTPNPTLMPHLNKLVILNLRGSKSLKSLPSGIFNLEFLTKLDLSG  163 (321)
Q Consensus       109 l~l~~~~l~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~l~~l~~L~~L~l~~  163 (321)
                      +++++|++. ..+   .|.+++.|..|.+.+|++....|.--..++.|+.|.+.+
T Consensus        47 iDLtdNdl~-~l~---~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~Ltn   97 (233)
T KOG1644|consen   47 IDLTDNDLR-KLD---NLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTN   97 (233)
T ss_pred             ecccccchh-hcc---cCCCccccceEEecCCcceeeccchhhhccccceEEecC
Confidence            444444444 333   344555555555555554443343222334444444444

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]

Probab=97.51  E-value=7.8e-05  Score=72.53  Aligned_cols=125  Identities=20%  Similarity=0.179  Sum_probs=87.1

Q ss_pred             cccCcEEecCCCCCccc-----ccccccCCccEEEeccccccc--cChhhhccCCCCeEecccCcccccccccccCCCCC
Q 037308          153 LEFLTKLDLSGCSKLKR-----LLEISSGNINWLFLRETAIEE--LPSSIERLLRLGHLDLSDCKRLKSLPSSLFKLKSL  225 (321)
Q Consensus       153 l~~L~~L~l~~~~~~~~-----~~~~~~~~L~~L~l~~~~i~~--l~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L  225 (321)
                      -.+|++|++++......     +.. .+|+|+.|.+.+-.+..  +..-..+.++|..||++++++...  ..++++++|
T Consensus       121 r~nL~~LdI~G~~~~s~~W~~kig~-~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl--~GIS~LknL  197 (699)
T KOG3665|consen  121 RQNLQHLDISGSELFSNGWPKKIGT-MLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL--SGISRLKNL  197 (699)
T ss_pred             HHhhhhcCccccchhhccHHHHHhh-hCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc--HHHhccccH
Confidence            35888999988444321     111 58999999998865543  444456778999999999886654  567889999


Q ss_pred             CEEEecCCCCCC-ccccccCCCCCCcEEEcccCCCcccc---h----hhhccCCcCEEeccCC
Q 037308          226 GVLNLGGCSNLQ-RLPECLGQLSSPIILNLAKTNVERIP---E----SIIQLFVLRYLLLSYS  280 (321)
Q Consensus       226 ~~L~l~~~~~~~-~~~~~~~~~~~L~~L~l~~n~l~~l~---~----~l~~l~~L~~L~l~~n  280 (321)
                      +.|.+.+-.+.. ..-..+-.+++|+.||+|..+-..-+   .    +-..+|+|+.|+.++.
T Consensus       198 q~L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgT  260 (699)
T KOG3665|consen  198 QVLSMRNLEFESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGT  260 (699)
T ss_pred             HHHhccCCCCCchhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCc
Confidence            999887644443 11124556899999999997655322   2    2235889999999986

>KOG2982 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.48  E-value=2.8e-05  Score=66.17  Aligned_cols=197  Identities=15%  Similarity=0.110  Sum_probs=97.0

Q ss_pred             cccEEEecCCCCCCCCCcC----CcCceeEEeccCCcccc---cccCCCCCCChHhHHhhccccccccCCCCCCC-CCCC
Q 037308           59 EVKYFHWHGYPLKSLPSNL----SAEKLVFLKVPYSDIEQ---LWNGEKHYSNLNQIINATCNKLIAKTPNPTLM-PHLN  130 (321)
Q Consensus        59 ~L~~l~l~~~~l~~~~~~~----~l~~L~~L~l~~~~l~~---~~~~~~~l~~L~~~l~l~~~~l~~~~~~~~~~-~~l~  130 (321)
                      -+..+.+.++.+.......    ..++++.+++.+|.|++   +..-+..+|.++. +++++|.+...+.   .+ .-..
T Consensus        46 a~ellvln~~~id~~gd~~~~~~~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~-LNls~N~L~s~I~---~lp~p~~  121 (418)
T KOG2982|consen   46 ALELLVLNGSIIDNEGDVMLFGSSVTDVKELDLTGNLISDWSEIGAILEQLPALTT-LNLSCNSLSSDIK---SLPLPLK  121 (418)
T ss_pred             chhhheecCCCCCcchhHHHHHHHhhhhhhhhcccchhccHHHHHHHHhcCccceE-eeccCCcCCCccc---cCccccc
Confidence            3445556666666554432    57777888888887765   2233456677777 7777776652221   22 2345


Q ss_pred             CccEEEccCCCCCcc-cCccccCcccCcEEecCCCCCcc------cccccccCCccEEEeccccccccC---hhhhccCC
Q 037308          131 KLVILNLRGSKSLKS-LPSGIFNLEFLTKLDLSGCSKLK------RLLEISSGNINWLFLRETAIEELP---SSIERLLR  200 (321)
Q Consensus       131 ~L~~L~l~~n~~~~~-~p~~l~~l~~L~~L~l~~~~~~~------~~~~~~~~~L~~L~l~~~~i~~l~---~~~~~l~~  200 (321)
                      +|+.|.+.+..+... ....+..++.++.|+++.|....      ...++ .+.+++|+...|......   .--...++
T Consensus       122 nl~~lVLNgT~L~w~~~~s~l~~lP~vtelHmS~N~~rq~n~Dd~c~e~~-s~~v~tlh~~~c~~~~w~~~~~l~r~Fpn  200 (418)
T KOG2982|consen  122 NLRVLVLNGTGLSWTQSTSSLDDLPKVTELHMSDNSLRQLNLDDNCIEDW-STEVLTLHQLPCLEQLWLNKNKLSRIFPN  200 (418)
T ss_pred             ceEEEEEcCCCCChhhhhhhhhcchhhhhhhhccchhhhhcccccccccc-chhhhhhhcCCcHHHHHHHHHhHHhhccc
Confidence            677777766543221 12234456666666666642111      11111 223444444444333211   11122345


Q ss_pred             CCeEecccCccccccc-ccccCCCCCCEEEecCCCCCCc-cccccCCCCCCcEEEcccCCCc
Q 037308          201 LGHLDLSDCKRLKSLP-SSLFKLKSLGVLNLGGCSNLQR-LPECLGQLSSPIILNLAKTNVE  260 (321)
Q Consensus       201 L~~L~l~~n~~~~~~~-~~~~~l~~L~~L~l~~~~~~~~-~~~~~~~~~~L~~L~l~~n~l~  260 (321)
                      +..+.+..|.+.+... .....++.+..|.++.+++..- --+.+.++++|+.|.++++.+.
T Consensus       201 v~sv~v~e~PlK~~s~ek~se~~p~~~~LnL~~~~idswasvD~Ln~f~~l~dlRv~~~Pl~  262 (418)
T KOG2982|consen  201 VNSVFVCEGPLKTESSEKGSEPFPSLSCLNLGANNIDSWASVDALNGFPQLVDLRVSENPLS  262 (418)
T ss_pred             chheeeecCcccchhhcccCCCCCcchhhhhcccccccHHHHHHHcCCchhheeeccCCccc
Confidence            5555555554433222 2233444555555555444321 1134556666666666666554

>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]

Probab=97.32  E-value=1.6e-05  Score=60.04  Aligned_cols=98  Identities=17%  Similarity=0.202  Sum_probs=46.2

Q ss_pred             cEEEecCCCCCCCCCc----CCcCceeEEeccCCcccccccCC-CCCCChHhHHhhccccccccCCCCCCCCCCCCccEE
Q 037308           61 KYFHWHGYPLKSLPSN----LSAEKLVFLKVPYSDIEQLWNGE-KHYSNLNQIINATCNKLIAKTPNPTLMPHLNKLVIL  135 (321)
Q Consensus        61 ~~l~l~~~~l~~~~~~----~~l~~L~~L~l~~~~l~~~~~~~-~~l~~L~~~l~l~~~~l~~~~~~~~~~~~l~~L~~L  135 (321)
                      -.++++.|++-.+++.    +...+|+..++++|.+++++..+ ..+|.++. ++++.|.++ .+|.  .+..++.|+.|
T Consensus        30 h~ldLssc~lm~i~davy~l~~~~el~~i~ls~N~fk~fp~kft~kf~t~t~-lNl~~neis-dvPe--E~Aam~aLr~l  105 (177)
T KOG4579|consen   30 HFLDLSSCQLMYIADAVYMLSKGYELTKISLSDNGFKKFPKKFTIKFPTATT-LNLANNEIS-DVPE--ELAAMPALRSL  105 (177)
T ss_pred             hhcccccchhhHHHHHHHHHhCCceEEEEecccchhhhCCHHHhhccchhhh-hhcchhhhh-hchH--HHhhhHHhhhc
Confidence            3444444444433332    13444555555555555544332 23334444 555555555 5554  45555555555


Q ss_pred             EccCCCCCcccCccccCcccCcEEecCC
Q 037308          136 NLRGSKSLKSLPSGIFNLEFLTKLDLSG  163 (321)
Q Consensus       136 ~l~~n~~~~~~p~~l~~l~~L~~L~l~~  163 (321)
                      +++.|. ....|..+..+.++.+|+...
T Consensus       106 Nl~~N~-l~~~p~vi~~L~~l~~Lds~~  132 (177)
T KOG4579|consen  106 NLRFNP-LNAEPRVIAPLIKLDMLDSPE  132 (177)
T ss_pred             ccccCc-cccchHHHHHHHhHHHhcCCC
Confidence            555555 223333333445555555444

>KOG4341 consensus F-box protein containing LRR [General function prediction only]

Probab=97.28  E-value=3e-06  Score=75.00  Aligned_cols=136  Identities=15%  Similarity=0.097  Sum_probs=69.2

Q ss_pred             cCCccEEEecccc-ccccCh-h-hhccCCCCeEecccCccccccc--ccccCCCCCCEEEecCCCCCC--ccccccCCCC
Q 037308          175 SGNINWLFLRETA-IEELPS-S-IERLLRLGHLDLSDCKRLKSLP--SSLFKLKSLGVLNLGGCSNLQ--RLPECLGQLS  247 (321)
Q Consensus       175 ~~~L~~L~l~~~~-i~~l~~-~-~~~l~~L~~L~l~~n~~~~~~~--~~~~~l~~L~~L~l~~~~~~~--~~~~~~~~~~  247 (321)
                      +..|++|+.+++. +++.+- . ..+..+|+.+.+.+|...++.-  ..-.+++.|+.+++.+|....  ++...-.+++
T Consensus       293 c~~lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~sls~~C~  372 (483)
T KOG4341|consen  293 CHALQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDGTLASLSRNCP  372 (483)
T ss_pred             hhHhhhhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhhhHhhhccCCc
Confidence            4455666665542 222221 1 2344566666666665433211  112255666666666654332  2223334566


Q ss_pred             CCcEEEcccCCCc-cc-----chhhhccCCcCEEeccCCCCccccc-----CccccccccccccCccchhhHHH
Q 037308          248 SPIILNLAKTNVE-RI-----PESIIQLFVLRYLLLSYSERIQSVS-----LPLARGILEDTQRSPHMDHKLAV  310 (321)
Q Consensus       248 ~L~~L~l~~n~l~-~l-----~~~l~~l~~L~~L~l~~n~~l~~~~-----~~~~l~~l~~~~~~~~~~~~l~~  310 (321)
                      .||.|.++.|... +-     ...-..+..|..+.+.+|+.+.+--     .=++++..+.++|+....+.+..
T Consensus       373 ~lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~Le~l~~c~~Leri~l~~~q~vtk~~i~~  446 (483)
T KOG4341|consen  373 RLRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDATLEHLSICRNLERIELIDCQDVTKEAISR  446 (483)
T ss_pred             hhccCChhhhhhhhhhhhhhhhhccccccccceeeecCCCCchHHHHHHHhhCcccceeeeechhhhhhhhhHH
Confidence            7777777766433 11     2222345566777777776664432     22466777777766665554443

>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=97.12  E-value=0.00032  Score=58.70  Aligned_cols=62  Identities=32%  Similarity=0.297  Sum_probs=24.8

Q ss_pred             cCCCCeEecccC--cccccccccccCCCCCCEEEecCCCCC--CccccccCCCCCCcEEEcccCCCc
Q 037308          198 LLRLGHLDLSDC--KRLKSLPSSLFKLKSLGVLNLGGCSNL--QRLPECLGQLSSPIILNLAKTNVE  260 (321)
Q Consensus       198 l~~L~~L~l~~n--~~~~~~~~~~~~l~~L~~L~l~~~~~~--~~~~~~~~~~~~L~~L~l~~n~l~  260 (321)
                      +++|++|.++.|  .+.+.++-....+++|+++++++|.+.  .++ ..+..+.+|..|++.+|..+
T Consensus        64 Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl-~pl~~l~nL~~Ldl~n~~~~  129 (260)
T KOG2739|consen   64 LPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTL-RPLKELENLKSLDLFNCSVT  129 (260)
T ss_pred             cchhhhhcccCCcccccccceehhhhCCceeEEeecCCcccccccc-chhhhhcchhhhhcccCCcc
Confidence            344455555544  222222222223344555555444332  111 12233344445555555444

>KOG2123 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.66  E-value=0.00017  Score=60.95  Aligned_cols=84  Identities=23%  Similarity=0.121  Sum_probs=52.8

Q ss_pred             CCCeEecccCcccccccccccCCCCCCEEEecCCCCCCccccccCCCCCCcEEEcccCCCcccch--hhhccCCcCEEec
Q 037308          200 RLGHLDLSDCKRLKSLPSSLFKLKSLGVLNLGGCSNLQRLPECLGQLSSPIILNLAKTNVERIPE--SIIQLFVLRYLLL  277 (321)
Q Consensus       200 ~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~l~~--~l~~l~~L~~L~l  277 (321)
                      +.++|+.-+|.+.+.  .....|+.|+.|.|+-|.+.+.  ..+..++.|++|+|..|.|.++.+  -+.++|+|+.|+|
T Consensus        20 ~vkKLNcwg~~L~DI--sic~kMp~lEVLsLSvNkIssL--~pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~LWL   95 (388)
T KOG2123|consen   20 NVKKLNCWGCGLDDI--SICEKMPLLEVLSLSVNKISSL--APLQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTLWL   95 (388)
T ss_pred             HhhhhcccCCCccHH--HHHHhcccceeEEeeccccccc--hhHHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhHhh
Confidence            445555555543332  2234666777777776665554  345667777777777777776654  4567788888888


Q ss_pred             cCCCCccccc
Q 037308          278 SYSERIQSVS  287 (321)
Q Consensus       278 ~~n~~l~~~~  287 (321)
                      ..|+-..+-+
T Consensus        96 ~ENPCc~~ag  105 (388)
T KOG2123|consen   96 DENPCCGEAG  105 (388)
T ss_pred             ccCCcccccc
Confidence            8777665544

>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=96.62  E-value=0.0018  Score=54.40  Aligned_cols=100  Identities=17%  Similarity=0.126  Sum_probs=69.2

Q ss_pred             CCCeEecccCcccccccccccCCCCCCEEEecCC--CCCCccccccCCCCCCcEEEcccCCCcccc--hhhhccCCcCEE
Q 037308          200 RLGHLDLSDCKRLKSLPSSLFKLKSLGVLNLGGC--SNLQRLPECLGQLSSPIILNLAKTNVERIP--ESIIQLFVLRYL  275 (321)
Q Consensus       200 ~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~~--~~~~~~~~~~~~~~~L~~L~l~~n~l~~l~--~~l~~l~~L~~L  275 (321)
                      .|+.+++.+..++..  ..+..+++|++|.++.|  ...+.++.....+++|+.+++++|+++.+.  ..+..+.+|..|
T Consensus        44 ~le~ls~~n~gltt~--~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~pl~~l~nL~~L  121 (260)
T KOG2739|consen   44 ELELLSVINVGLTTL--TNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRPLKELENLKSL  121 (260)
T ss_pred             chhhhhhhccceeec--ccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccchhhhhcchhhh
Confidence            455555555443322  23557889999999999  666666666667799999999999998433  356778899999


Q ss_pred             eccCCCCccccc--------CccccccccccccCc
Q 037308          276 LLSYSERIQSVS--------LPLARGILEDTQRSP  302 (321)
Q Consensus       276 ~l~~n~~l~~~~--------~~~~l~~l~~~~~~~  302 (321)
                      ++..|+-.. +.        +.+++.+|+-..+..
T Consensus       122 dl~n~~~~~-l~dyre~vf~ll~~L~~LD~~dv~~  155 (260)
T KOG2739|consen  122 DLFNCSVTN-LDDYREKVFLLLPSLKYLDGCDVDG  155 (260)
T ss_pred             hcccCCccc-cccHHHHHHHHhhhhccccccccCC
Confidence            999995443 32        556677776665443

>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A

Probab=96.49  E-value=0.011  Score=44.75  Aligned_cols=37  Identities=11%  Similarity=0.212  Sum_probs=17.2

Q ss_pred             CCCCCCCccEEEccCCCCCccc-CccccCcccCcEEecCC
Q 037308          125 LMPHLNKLVILNLRGSKSLKSL-PSGIFNLEFLTKLDLSG  163 (321)
Q Consensus       125 ~~~~l~~L~~L~l~~n~~~~~~-p~~l~~l~~L~~L~l~~  163 (321)
                      .|.++.+|+.+.+.. . ...+ ...|..+++|+.+++..
T Consensus         7 ~F~~~~~l~~i~~~~-~-~~~I~~~~F~~~~~l~~i~~~~   44 (129)
T PF13306_consen    7 AFYNCSNLESITFPN-T-IKKIGENAFSNCTSLKSINFPN   44 (129)
T ss_dssp             TTTT-TT--EEEETS-T---EE-TTTTTT-TT-SEEEESS
T ss_pred             HHhCCCCCCEEEECC-C-eeEeChhhcccccccccccccc
Confidence            466666777777764 2 2233 23455666666666654

>KOG2123 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.31  E-value=0.00022  Score=60.36  Aligned_cols=100  Identities=19%  Similarity=0.150  Sum_probs=66.0

Q ss_pred             CcccEEEecCCCCCCCCCcCCcCceeEEeccCCcccccccCCCCCCChHhHHhhccccccccCCCCCCCCCCCCccEEEc
Q 037308           58 AEVKYFHWHGYPLKSLPSNLSAEKLVFLKVPYSDIEQLWNGEKHYSNLNQIINATCNKLIAKTPNPTLMPHLNKLVILNL  137 (321)
Q Consensus        58 ~~L~~l~l~~~~l~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~l~~L~~~l~l~~~~l~~~~~~~~~~~~l~~L~~L~l  137 (321)
                      .+.+.|++-||.+..|.--..|+.|+.|.|+-|.|+++ ..+..+.+|++ +++..|.|. .+...+.+.++++|+.|.|
T Consensus        19 ~~vkKLNcwg~~L~DIsic~kMp~lEVLsLSvNkIssL-~pl~rCtrLkE-lYLRkN~I~-sldEL~YLknlpsLr~LWL   95 (388)
T KOG2123|consen   19 ENVKKLNCWGCGLDDISICEKMPLLEVLSLSVNKISSL-APLQRCTRLKE-LYLRKNCIE-SLDELEYLKNLPSLRTLWL   95 (388)
T ss_pred             HHhhhhcccCCCccHHHHHHhcccceeEEeeccccccc-hhHHHHHHHHH-HHHHhcccc-cHHHHHHHhcCchhhhHhh
Confidence            44566777777776664334788888888888888774 44567777888 888878777 5554345677788888888


Q ss_pred             cCCCCCcccCc-----cccCcccCcEEe
Q 037308          138 RGSKSLKSLPS-----GIFNLEFLTKLD  160 (321)
Q Consensus       138 ~~n~~~~~~p~-----~l~~l~~L~~L~  160 (321)
                      ..|.-.+.-+.     .+..+++|+.||
T Consensus        96 ~ENPCc~~ag~nYR~~VLR~LPnLkKLD  123 (388)
T KOG2123|consen   96 DENPCCGEAGQNYRRKVLRVLPNLKKLD  123 (388)
T ss_pred             ccCCcccccchhHHHHHHHHcccchhcc
Confidence            87765444332     133456666664

>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A

Probab=96.19  E-value=0.029  Score=42.33  Aligned_cols=116  Identities=9%  Similarity=0.137  Sum_probs=47.4

Q ss_pred             ccCcccCcEEecCCCCCccccccc---ccCCccEEEeccccccccCh-hhhccCCCCeEecccCcccccccccccCCCCC
Q 037308          150 IFNLEFLTKLDLSGCSKLKRLLEI---SSGNINWLFLRETAIEELPS-SIERLLRLGHLDLSDCKRLKSLPSSLFKLKSL  225 (321)
Q Consensus       150 l~~l~~L~~L~l~~~~~~~~~~~~---~~~~L~~L~l~~~~i~~l~~-~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L  225 (321)
                      |.++++|+.+.+..  ....++..   .+.+|+.+.+..+ +..++. .+.++++++.+.+.. .........+..++++
T Consensus         8 F~~~~~l~~i~~~~--~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~~l   83 (129)
T PF13306_consen    8 FYNCSNLESITFPN--TIKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNCTNL   83 (129)
T ss_dssp             TTT-TT--EEEETS--T--EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-TTE
T ss_pred             HhCCCCCCEEEECC--CeeEeChhhccccccccccccccc-ccccceeeeecccccccccccc-cccccccccccccccc
Confidence            55566666666653  12222222   3446777776653 565553 355555677777754 3333333455567777


Q ss_pred             CEEEecCCCCCCccccccCCCCCCcEEEcccCCCcccc-hhhhccCCc
Q 037308          226 GVLNLGGCSNLQRLPECLGQLSSPIILNLAKTNVERIP-ESIIQLFVL  272 (321)
Q Consensus       226 ~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~l~-~~l~~l~~L  272 (321)
                      +.+++..+ ....-...+.++ .++.+.+.. .++.++ ..+.++++|
T Consensus        84 ~~i~~~~~-~~~i~~~~f~~~-~l~~i~~~~-~~~~i~~~~F~~~~~l  128 (129)
T PF13306_consen   84 KNIDIPSN-ITEIGSSSFSNC-NLKEINIPS-NITKIEENAFKNCTKL  128 (129)
T ss_dssp             CEEEETTT--BEEHTTTTTT--T--EEE-TT-B-SS----GGG-----
T ss_pred             cccccCcc-ccEEchhhhcCC-CceEEEECC-CccEECCccccccccC
Confidence            77777552 322223455555 677776654 344444 344555544

>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]

Probab=95.80  E-value=0.0029  Score=59.37  Aligned_cols=88  Identities=31%  Similarity=0.367  Sum_probs=45.8

Q ss_pred             CCCCCCCccEEEccCC-CCCcccC----ccccCcccCcEEecCCCCCccccc--cc--ccCCccEEEecccc-ccc--cC
Q 037308          125 LMPHLNKLVILNLRGS-KSLKSLP----SGIFNLEFLTKLDLSGCSKLKRLL--EI--SSGNINWLFLRETA-IEE--LP  192 (321)
Q Consensus       125 ~~~~l~~L~~L~l~~n-~~~~~~p----~~l~~l~~L~~L~l~~~~~~~~~~--~~--~~~~L~~L~l~~~~-i~~--l~  192 (321)
                      ....++.|+.|+++++ ......+    .....+.+|++++++.+..++...  ..  .+++|+.|.+..+. +++  +.
T Consensus       209 ~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l~~~c~~L~~L~l~~c~~lt~~gl~  288 (482)
T KOG1947|consen  209 LALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSALASRCPNLETLSLSNCSNLTDEGLV  288 (482)
T ss_pred             HHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHHHhhCCCcceEccCCCCccchhHHH
Confidence            3455667777777652 1111111    123345667777777665333211  11  25567777766555 443  22


Q ss_pred             hhhhccCCCCeEecccCccc
Q 037308          193 SSIERLLRLGHLDLSDCKRL  212 (321)
Q Consensus       193 ~~~~~l~~L~~L~l~~n~~~  212 (321)
                      .....++.|++|++++|...
T Consensus       289 ~i~~~~~~L~~L~l~~c~~~  308 (482)
T KOG1947|consen  289 SIAERCPSLRELDLSGCHGL  308 (482)
T ss_pred             HHHHhcCcccEEeeecCccc
Confidence            33455666777777766554

>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=95.63  E-value=0.0039  Score=31.44  Aligned_cols=18  Identities=33%  Similarity=0.469  Sum_probs=9.4

Q ss_pred             CcEEEcccCCCcccchhh
Q 037308          249 PIILNLAKTNVERIPESI  266 (321)
Q Consensus       249 L~~L~l~~n~l~~l~~~l  266 (321)
                      |+.||+++|+++.+|..+
T Consensus         2 L~~Ldls~n~l~~ip~~~   19 (22)
T PF00560_consen    2 LEYLDLSGNNLTSIPSSF   19 (22)
T ss_dssp             ESEEEETSSEESEEGTTT
T ss_pred             ccEEECCCCcCEeCChhh
Confidence            455555555555555433

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....

>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D

Probab=95.39  E-value=0.01  Score=27.77  Aligned_cols=15  Identities=13%  Similarity=0.286  Sum_probs=5.8

Q ss_pred             CCcEEEcccCCCccc
Q 037308          248 SPIILNLAKTNVERI  262 (321)
Q Consensus       248 ~L~~L~l~~n~l~~l  262 (321)
                      +|+.|++++|+++++
T Consensus         2 ~L~~L~l~~n~L~~l   16 (17)
T PF13504_consen    2 NLRTLDLSNNRLTSL   16 (17)
T ss_dssp             T-SEEEETSS--SSE
T ss_pred             ccCEEECCCCCCCCC
Confidence            344555555554444

...

>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=95.31  E-value=0.0085  Score=30.17  Aligned_cols=18  Identities=28%  Similarity=0.541  Sum_probs=9.3

Q ss_pred             ccEEEeccccccccChhh
Q 037308          178 INWLFLRETAIEELPSSI  195 (321)
Q Consensus       178 L~~L~l~~~~i~~l~~~~  195 (321)
                      |++|++++|.++.+|.++
T Consensus         2 L~~Ldls~n~l~~ip~~~   19 (22)
T PF00560_consen    2 LEYLDLSGNNLTSIPSSF   19 (22)
T ss_dssp             ESEEEETSSEESEEGTTT
T ss_pred             ccEEECCCCcCEeCChhh
Confidence            455555555555555443

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....

>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]

Probab=93.81  E-value=0.031  Score=52.36  Aligned_cols=129  Identities=28%  Similarity=0.270  Sum_probs=69.8

Q ss_pred             CcccCcEEecCCCCCccc--cccc--ccCCccEEEeccc--cccccC----hhhhccCCCCeEecccCc-cccccccccc
Q 037308          152 NLEFLTKLDLSGCSKLKR--LLEI--SSGNINWLFLRET--AIEELP----SSIERLLRLGHLDLSDCK-RLKSLPSSLF  220 (321)
Q Consensus       152 ~l~~L~~L~l~~~~~~~~--~~~~--~~~~L~~L~l~~~--~i~~l~----~~~~~l~~L~~L~l~~n~-~~~~~~~~~~  220 (321)
                      .++.|+.+.+..|..+..  +...  ..+.|+.|+++++  .+...+    .....+..|+.++++.+. +++..-..+.
T Consensus       186 ~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l~  265 (482)
T KOG1947|consen  186 SCPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSALA  265 (482)
T ss_pred             hCchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHHH
Confidence            356777777777665553  2121  4667777777752  111111    123344677777777766 3332222222


Q ss_pred             -CCCCCCEEEecCCCC-CCc-cccccCCCCCCcEEEcccCCCc---ccchhhhccCCcCEEeccCC
Q 037308          221 -KLKSLGVLNLGGCSN-LQR-LPECLGQLSSPIILNLAKTNVE---RIPESIIQLFVLRYLLLSYS  280 (321)
Q Consensus       221 -~l~~L~~L~l~~~~~-~~~-~~~~~~~~~~L~~L~l~~n~l~---~l~~~l~~l~~L~~L~l~~n  280 (321)
                       .+++|+.|.+..|.. ... +......++.|+.|+++.|...   .+......+++++.+.+...
T Consensus       266 ~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~~d~~l~~~~~~c~~l~~l~~~~~  331 (482)
T KOG1947|consen  266 SRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGLTDSGLEALLKNCPNLRELKLLSL  331 (482)
T ss_pred             hhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccchHHHHHHHHHhCcchhhhhhhhc
Confidence             367777777776653 222 2233445677888888777543   23333445666655544433

>KOG3864 consensus Uncharacterized conserved protein [Function unknown]

Probab=92.76  E-value=0.018  Score=46.70  Aligned_cols=80  Identities=25%  Similarity=0.244  Sum_probs=42.6

Q ss_pred             CCeEecccCcccccccccccCCCCCCEEEecCCCCCCcc-ccccC-CCCCCcEEEcccC-CCcccc-hhhhccCCcCEEe
Q 037308          201 LGHLDLSDCKRLKSLPSSLFKLKSLGVLNLGGCSNLQRL-PECLG-QLSSPIILNLAKT-NVERIP-ESIIQLFVLRYLL  276 (321)
Q Consensus       201 L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~-~~~~~-~~~~L~~L~l~~n-~l~~l~-~~l~~l~~L~~L~  276 (321)
                      ++.+|-+++.+....-+.+..+++++.|.+..|.-...- -+.++ ..++|+.|++++| +|++-- .++..+++|+.|.
T Consensus       103 IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~L~  182 (221)
T KOG3864|consen  103 IEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNLRRLH  182 (221)
T ss_pred             EEEEecCCchHHHHHHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHHhhhhHHHH
Confidence            455555555544444444555556666666655443321 01111 3466777777765 566322 4666677777776


Q ss_pred             ccCC
Q 037308          277 LSYS  280 (321)
Q Consensus       277 l~~n  280 (321)
                      +.+=
T Consensus       183 l~~l  186 (221)
T KOG3864|consen  183 LYDL  186 (221)
T ss_pred             hcCc
Confidence            6554

>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily

Probab=91.92  E-value=0.16  Score=26.44  Aligned_cols=21  Identities=19%  Similarity=0.358  Sum_probs=15.3

Q ss_pred             CCCCcEEEcccCCCcccchhh
Q 037308          246 LSSPIILNLAKTNVERIPESI  266 (321)
Q Consensus       246 ~~~L~~L~l~~n~l~~l~~~l  266 (321)
                      +++|+.|++++|.++.+|...
T Consensus         1 L~~L~~L~L~~N~l~~lp~~~   21 (26)
T smart00369        1 LPNLRELDLSNNQLSSLPPGA   21 (26)
T ss_pred             CCCCCEEECCCCcCCcCCHHH
Confidence            357788888888888877543

>smart00370 LRR Leucine-rich repeats, outliers

Probab=91.92  E-value=0.16  Score=26.44  Aligned_cols=21  Identities=19%  Similarity=0.358  Sum_probs=15.3

Q ss_pred             CCCCcEEEcccCCCcccchhh
Q 037308          246 LSSPIILNLAKTNVERIPESI  266 (321)
Q Consensus       246 ~~~L~~L~l~~n~l~~l~~~l  266 (321)
                      +++|+.|++++|.++.+|...
T Consensus         1 L~~L~~L~L~~N~l~~lp~~~   21 (26)
T smart00370        1 LPNLRELDLSNNQLSSLPPGA   21 (26)
T ss_pred             CCCCCEEECCCCcCCcCCHHH
Confidence            357788888888888877543

>KOG4308 consensus LRR-containing protein [Function unknown]

Probab=90.39  E-value=0.0023  Score=59.84  Aligned_cols=178  Identities=23%  Similarity=0.184  Sum_probs=85.9

Q ss_pred             eeEEeccCCcccc-----cccCCCCCCChHhHHhhccccccccCCC--CCCCCCC-CCccEEEccCCCCCc----ccCcc
Q 037308           82 LVFLKVPYSDIEQ-----LWNGEKHYSNLNQIINATCNKLIAKTPN--PTLMPHL-NKLVILNLRGSKSLK----SLPSG  149 (321)
Q Consensus        82 L~~L~l~~~~l~~-----~~~~~~~l~~L~~~l~l~~~~l~~~~~~--~~~~~~l-~~L~~L~l~~n~~~~----~~p~~  149 (321)
                      +..+.+.+|.+..     +..++...+.+.. ++++.|.+.+....  ...+... ..++.|.+..|.+..    .+++.
T Consensus        89 l~~L~L~~~~l~~~~~~~l~~~l~t~~~L~~-L~l~~n~l~~~g~~~l~~~l~~~~~~l~~L~l~~c~l~~~g~~~l~~~  167 (478)
T KOG4308|consen   89 LLHLSLANNRLGDRGAEELAQALKTLPTLGQ-LDLSGNNLGDEGARLLCEGLRLPQCLLQTLELVSCSLTSEGAAPLAAV  167 (478)
T ss_pred             HHHhhhhhCccccchHHHHHHHhcccccHhH-hhcccCCCccHhHHHHHhhcccchHHHHHHHhhcccccccchHHHHHH
Confidence            4445555554433     2233344455555 55555555411100  0012222 344555555554332    12333


Q ss_pred             ccCcccCcEEecCCCCCccc--------ccc--cccCCccEEEeccccccc-----cChhhhccCC-CCeEecccCcccc
Q 037308          150 IFNLEFLTKLDLSGCSKLKR--------LLE--ISSGNINWLFLRETAIEE-----LPSSIERLLR-LGHLDLSDCKRLK  213 (321)
Q Consensus       150 l~~l~~L~~L~l~~~~~~~~--------~~~--~~~~~L~~L~l~~~~i~~-----l~~~~~~l~~-L~~L~l~~n~~~~  213 (321)
                      +.....++.++++.|.....        ++.  ....+++.|++..|.++.     +...+...+. +.++++..|.+.+
T Consensus       168 L~~~~~l~~l~l~~n~l~~~g~~~l~~~l~~~~~~~~~le~L~L~~~~~t~~~c~~l~~~l~~~~~~~~el~l~~n~l~d  247 (478)
T KOG4308|consen  168 LEKNEHLTELDLSLNGLIELGLLVLSQALESAASPLSSLETLKLSRCGVTSSSCALLDEVLASGESLLRELDLASNKLGD  247 (478)
T ss_pred             HhcccchhHHHHHhcccchhhhHHHhhhhhhhhcccccHHHHhhhhcCcChHHHHHHHHHHhccchhhHHHHHHhcCcch
Confidence            44455555556555543210        111  024456666666666653     1222334444 5567777766543


Q ss_pred             c----ccccccCC-CCCCEEEecCCCCCCc----cccccCCCCCCcEEEcccCCCc
Q 037308          214 S----LPSSLFKL-KSLGVLNLGGCSNLQR----LPECLGQLSSPIILNLAKTNVE  260 (321)
Q Consensus       214 ~----~~~~~~~l-~~L~~L~l~~~~~~~~----~~~~~~~~~~L~~L~l~~n~l~  260 (321)
                      .    ....+..+ ..++.++++.|.+...    +.+.+..+++++.+.++.|.+.
T Consensus       248 ~g~~~L~~~l~~~~~~l~~l~l~~nsi~~~~~~~L~~~l~~~~~l~~l~l~~n~l~  303 (478)
T KOG4308|consen  248 VGVEKLLPCLSVLSETLRVLDLSRNSITEKGVRDLAEVLVSCRQLEELSLSNNPLT  303 (478)
T ss_pred             HHHHHHHHHhcccchhhhhhhhhcCCccccchHHHHHHHhhhHHHHHhhcccCccc
Confidence            3    22334444 5667777777766543    3344555667777777777765

>KOG4308 consensus LRR-containing protein [Function unknown]

Probab=88.58  E-value=0.0077  Score=56.32  Aligned_cols=175  Identities=25%  Similarity=0.281  Sum_probs=104.9

Q ss_pred             hHhHHhhcccccccc----CCCCCCCCCCCCccEEEccCCCCCcc----cCccccCc-ccCcEEecCCCCCccccc----
Q 037308          105 LNQIINATCNKLIAK----TPNPTLMPHLNKLVILNLRGSKSLKS----LPSGIFNL-EFLTKLDLSGCSKLKRLL----  171 (321)
Q Consensus       105 L~~~l~l~~~~l~~~----~~~~~~~~~l~~L~~L~l~~n~~~~~----~p~~l~~l-~~L~~L~l~~~~~~~~~~----  171 (321)
                      +.. +.+..|.+...    +..  .+.....|+.|++++|.+...    +.+.+... ..+++|.+..|.......    
T Consensus        89 l~~-L~L~~~~l~~~~~~~l~~--~l~t~~~L~~L~l~~n~l~~~g~~~l~~~l~~~~~~l~~L~l~~c~l~~~g~~~l~  165 (478)
T KOG4308|consen   89 LLH-LSLANNRLGDRGAEELAQ--ALKTLPTLGQLDLSGNNLGDEGARLLCEGLRLPQCLLQTLELVSCSLTSEGAAPLA  165 (478)
T ss_pred             HHH-hhhhhCccccchHHHHHH--HhcccccHhHhhcccCCCccHhHHHHHhhcccchHHHHHHHhhcccccccchHHHH
Confidence            444 66666666511    112  456678888899999875421    11223332 566777777765433211    


Q ss_pred             cc--ccCCccEEEeccccccc-----cChhhh----ccCCCCeEecccCccccc----ccccccCCCC-CCEEEecCCCC
Q 037308          172 EI--SSGNINWLFLRETAIEE-----LPSSIE----RLLRLGHLDLSDCKRLKS----LPSSLFKLKS-LGVLNLGGCSN  235 (321)
Q Consensus       172 ~~--~~~~L~~L~l~~~~i~~-----l~~~~~----~l~~L~~L~l~~n~~~~~----~~~~~~~l~~-L~~L~l~~~~~  235 (321)
                      ..  ....++.++++.|.+..     ++..+.    ...++++|.+++|.++..    ....+...+. +..+++..|..
T Consensus       166 ~~L~~~~~l~~l~l~~n~l~~~g~~~l~~~l~~~~~~~~~le~L~L~~~~~t~~~c~~l~~~l~~~~~~~~el~l~~n~l  245 (478)
T KOG4308|consen  166 AVLEKNEHLTELDLSLNGLIELGLLVLSQALESAASPLSSLETLKLSRCGVTSSSCALLDEVLASGESLLRELDLASNKL  245 (478)
T ss_pred             HHHhcccchhHHHHHhcccchhhhHHHhhhhhhhhcccccHHHHhhhhcCcChHHHHHHHHHHhccchhhHHHHHHhcCc
Confidence            11  25567778888887753     233333    355778888888776531    2223445555 66688877665


Q ss_pred             CCc----cccccCCC-CCCcEEEcccCCCc-----ccchhhhccCCcCEEeccCCCC
Q 037308          236 LQR----LPECLGQL-SSPIILNLAKTNVE-----RIPESIIQLFVLRYLLLSYSER  282 (321)
Q Consensus       236 ~~~----~~~~~~~~-~~L~~L~l~~n~l~-----~l~~~l~~l~~L~~L~l~~n~~  282 (321)
                      ...    ....+..+ ..++.++++.|.++     .+...+..++.++++.+..|+.
T Consensus       246 ~d~g~~~L~~~l~~~~~~l~~l~l~~nsi~~~~~~~L~~~l~~~~~l~~l~l~~n~l  302 (478)
T KOG4308|consen  246 GDVGVEKLLPCLSVLSETLRVLDLSRNSITEKGVRDLAEVLVSCRQLEELSLSNNPL  302 (478)
T ss_pred             chHHHHHHHHHhcccchhhhhhhhhcCCccccchHHHHHHHhhhHHHHHhhcccCcc
Confidence            432    23344445 67788888888887     3445566777888888888844

>KOG3864 consensus Uncharacterized conserved protein [Function unknown]

Probab=87.40  E-value=0.12  Score=41.98  Aligned_cols=81  Identities=20%  Similarity=0.002  Sum_probs=59.3

Q ss_pred             CCCEEEecCCCCCCccccccCCCCCCcEEEcccCC-Ccccc-hhhh-ccCCcCEEeccCCCCccccc-----Cccccccc
Q 037308          224 SLGVLNLGGCSNLQRLPECLGQLSSPIILNLAKTN-VERIP-ESII-QLFVLRYLLLSYSERIQSVS-----LPLARGIL  295 (321)
Q Consensus       224 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~-l~~l~-~~l~-~l~~L~~L~l~~n~~l~~~~-----~~~~l~~l  295 (321)
                      .++.++-+++.+..+.-+-+.++++++.|.+.+|. +.+.- +.++ -.++|+.|+|++|++|++-.     -.++|+.|
T Consensus       102 ~IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~L  181 (221)
T KOG3864|consen  102 KIEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNLRRL  181 (221)
T ss_pred             eEEEEecCCchHHHHHHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHHhhhhHHH
Confidence            46778888877777666778888999999988885 33211 2232 35799999999999998765     44688888


Q ss_pred             cccccCccc
Q 037308          296 EDTQRSPHM  304 (321)
Q Consensus       296 ~~~~~~~~~  304 (321)
                      .+++.....
T Consensus       182 ~l~~l~~v~  190 (221)
T KOG3864|consen  182 HLYDLPYVA  190 (221)
T ss_pred             HhcCchhhh
Confidence            877765554

>smart00364 LRR_BAC Leucine-rich repeats, bacterial type

Probab=85.94  E-value=0.46  Score=24.86  Aligned_cols=18  Identities=28%  Similarity=0.440  Sum_probs=14.2

Q ss_pred             CCCcEEEcccCCCcccch
Q 037308          247 SSPIILNLAKTNVERIPE  264 (321)
Q Consensus       247 ~~L~~L~l~~n~l~~l~~  264 (321)
                      ++|+.|++++|+++++|+
T Consensus         2 ~~L~~L~vs~N~Lt~LPe   19 (26)
T smart00364        2 PSLKELNVSNNQLTSLPE   19 (26)
T ss_pred             cccceeecCCCccccCcc
Confidence            367888888888888875

>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily

Probab=84.30  E-value=0.75  Score=23.93  Aligned_cols=17  Identities=35%  Similarity=0.110  Sum_probs=13.9

Q ss_pred             cCCcCEEeccCCCCccc
Q 037308          269 LFVLRYLLLSYSERIQS  285 (321)
Q Consensus       269 l~~L~~L~l~~n~~l~~  285 (321)
                      ++.|++|++++|+.+++
T Consensus         1 c~~L~~L~l~~C~~itD   17 (26)
T smart00367        1 CPNLRELDLSGCTNITD   17 (26)
T ss_pred             CCCCCEeCCCCCCCcCH
Confidence            57888899999888876

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	321
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	2e-29
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	3e-25
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	2e-24
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	2e-24
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	3e-22
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	1e-17
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	9e-07
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	1e-20
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	3e-18
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	4e-15
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	5e-10
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	7e-13
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	3e-12
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	9e-11
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	4e-10
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	5e-10
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	3e-09
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	3e-04
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	3e-12
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	6e-12
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	1e-10
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	6e-09
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	4e-07
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	2e-11
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	2e-11
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	1e-04
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	2e-04
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	3e-11
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	5e-10
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	2e-09
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	6e-09
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	5e-06
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	6e-11
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	7e-11
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	3e-09
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	2e-05
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	8e-11
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	7e-06
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	4e-10
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	7e-08
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	5e-10
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	2e-08
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	6e-08
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	8e-07
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	9e-06
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	6e-10
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	2e-09
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	8e-10
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	6e-09
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	1e-09
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	2e-07
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	4e-07
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	7e-05
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	5e-09
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	2e-05
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	6e-05
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	6e-09
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	2e-08
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	2e-07
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	1e-06
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	4e-06
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	3e-05
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	6e-09
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	7e-08
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	2e-07
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	8e-05
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	1e-04
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	2e-08
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	2e-08
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	2e-06
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	2e-08
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	1e-06
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	1e-06
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	3e-08
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	5e-08
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	6e-07
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	1e-06
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	2e-06
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	5e-06
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	1e-04
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	7e-04
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	6e-08
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	3e-07
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	1e-05
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	9e-05
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	4e-04
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	6e-04
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	6e-08
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	1e-06
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	1e-05
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	8e-08
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	3e-07
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	4e-06
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	3e-05
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	1e-07
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	6e-06
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	1e-07
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	4e-07
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	4e-07
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	1e-07
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	4e-06
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	2e-07
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	2e-05
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	2e-04
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	5e-04
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	3e-07
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	8e-05
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	4e-07
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	1e-05
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	4e-07
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	4e-07
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	8e-07
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	5e-07
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	8e-07
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	2e-06
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	2e-05
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	1e-04
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	5e-07
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	9e-07
3m19_A	251	Variable lymphocyte receptor A diversity region; a	9e-07
3m19_A	251	Variable lymphocyte receptor A diversity region; a	3e-05
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	1e-06
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	2e-06
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	2e-05
3e6j_A	229	Variable lymphocyte receptor diversity region; var	2e-06
3e6j_A	229	Variable lymphocyte receptor diversity region; var	2e-05
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	2e-06
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	2e-05
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	3e-06
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	4e-06
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	7e-04
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	3e-06
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	5e-06
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	3e-06
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	5e-06
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	9e-06
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	1e-05
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	4e-05
1o6v_A	466	Internalin A; bacterial infection, extracellular r	1e-05
1o6v_A	466	Internalin A; bacterial infection, extracellular r	6e-05
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	4e-05
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	8e-05
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	9e-05
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	1e-04
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	2e-04
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	3e-04
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	3e-04
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	4e-04
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	5e-04
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	7e-04
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	9e-04

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score =  113 bits (285), Expect = 2e-29
 Identities = 57/236 (24%), Positives = 93/236 (39%), Gaps = 21/236 (8%)

Query: 66  HGYPLKSLPS---NLSAEKLVFLKVPYSDIEQLWNGEKHYSNLNQIINATCNKLIAKTPN 122
            G  LK+      + +    V L++    + Q  +     S+L Q +      L+     
Sbjct: 64  TGRALKATADLLEDATQPGRVALELRSVPLPQFPDQAFRLSHL-QHMTIDAAGLMEL--- 119

Query: 123 PTLMPHLNKLVILNLRGSKSLKSLPSGIFNLEFLTKLDLSGCSKLKRL------LEISSG 176
           P  M     L  L L  +  L++LP+ I +L  L +L +  C +L  L       + S  
Sbjct: 120 PDTMQQFAGLETLTLARNP-LRALPASIASLNRLRELSIRACPELTELPEPLASTDASGE 178

Query: 177 -----NINWLFLRETAIEELPSSIERLLRLGHLDLSDCKRLKSLPSSLFKLKSLGVLNLG 231
                N+  L L  T I  LP+SI  L  L  L + +   L +L  ++  L  L  L+L 
Sbjct: 179 HQGLVNLQSLRLEWTGIRSLPASIANLQNLKSLKIRNSP-LSALGPAIHHLPKLEELDLR 237

Query: 232 GCSNLQRLPECLGQLSSPIILNLAKTN-VERIPESIIQLFVLRYLLLSYSERIQSV 286
           GC+ L+  P   G  +    L L   + +  +P  I +L  L  L L     +  +
Sbjct: 238 GCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRL 293

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score =  102 bits (256), Expect = 3e-25
 Identities = 58/269 (21%), Positives = 103/269 (38%), Gaps = 19/269 (7%)

Query: 23  STFTKMPKLRFLKFYSSSFNGENKCKVSYLQDPRFAEVKYFHWHGYPLKSLPSNL-SAEK 81
            +  +       +  + +     K     L+D              PL   P        
Sbjct: 47  HSAWRQANSNNPQIETRTGR-ALKATADLLEDATQPGRVALELRSVPLPQFPDQAFRLSH 105

Query: 82  LVFLKVPYSDIEQLWNGEKHYSNLNQIINATCNKLIAKTPNPTLMPHLNKLVILNLRGSK 141
           L  + +  + + +L +  + ++ L + +    N L A    P  +  LN+L  L++R   
Sbjct: 106 LQHMTIDAAGLMELPDTMQQFAGL-ETLTLARNPLRAL---PASIASLNRLRELSIRACP 161

Query: 142 SLKSLPSGIFNLEF---------LTKLDLSGCSKLKRL-LEISS-GNINWLFLRETAIEE 190
            L  LP  + + +          L  L L   + ++ L   I++  N+  L +R + +  
Sbjct: 162 ELTELPEPLASTDASGEHQGLVNLQSLRLE-WTGIRSLPASIANLQNLKSLKIRNSPLSA 220

Query: 191 LPSSIERLLRLGHLDLSDCKRLKSLPSSLFKLKSLGVLNLGGCSNLQRLPECLGQLSSPI 250
           L  +I  L +L  LDL  C  L++ P        L  L L  CSNL  LP  + +L+   
Sbjct: 221 LGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLE 280

Query: 251 ILNLAK-TNVERIPESIIQLFVLRYLLLS 278
            L+L    N+ R+P  I QL     +L+ 
Sbjct: 281 KLDLRGCVNLSRLPSLIAQLPANCIILVP 309

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score =  100 bits (251), Expect = 2e-24
 Identities = 31/161 (19%), Positives = 55/161 (34%), Gaps = 6/161 (3%)

Query: 128 HLNKLVILNLRGSKSLKSLPSGIFNLEFLTKLDLSGCSKLKRLLEISSGNINWLFLRETA 187
           H +    L  +GS +L+     +   +     D +      R    +  N         A
Sbjct: 10  HSSGRENLYFQGSTALRPYHDVLSQWQRHYNADRNRWHSAWRQANSN--NPQIETRTGRA 67

Query: 188 IEELPSSIERL--LRLGHLDLSDCKRLKSLPSSLFKLKSLGVLNLGGCSNLQRLPECLGQ 245
           ++     +E         L+L     L   P   F+L  L  + +     L  LP+ + Q
Sbjct: 68  LKATADLLEDATQPGRVALELRSVP-LPQFPDQAFRLSHLQHMTIDAAG-LMELPDTMQQ 125

Query: 246 LSSPIILNLAKTNVERIPESIIQLFVLRYLLLSYSERIQSV 286
            +    L LA+  +  +P SI  L  LR L +     +  +
Sbjct: 126 FAGLETLTLARNPLRALPASIASLNRLRELSIRACPELTEL 166

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score =  100 bits (251), Expect = 2e-24
 Identities = 49/228 (21%), Positives = 77/228 (33%), Gaps = 18/228 (7%)

Query: 70  LKSLPSNLSAEKLVFLKVPYSDIEQLWNGEKHYSNLNQIINATCNKLIAKTPNPTLMPHL 129
           L+     LS  +         +       + + +N  QI   T   L A T +       
Sbjct: 25  LRPYHDVLS--QWQRHYNADRNRWHSAWRQANSNNP-QIETRTGRALKA-TADLLEDATQ 80

Query: 130 NKLVILNLRGSKSLKSLPSGIFNLEFLTKLDLSGCSKLKRL-LEISS-GNINWLFLRETA 187
              V L LR    L   P   F L  L  + +     L  L   +     +  L L    
Sbjct: 81  PGRVALELRSVP-LPQFPDQAFRLSHLQHMTIDAA-GLMELPDTMQQFAGLETLTLARNP 138

Query: 188 IEELPSSIERLLRLGHLDLSDCKRLKSLPSSL---------FKLKSLGVLNLGGCSNLQR 238
           +  LP+SI  L RL  L +  C  L  LP  L           L +L  L L   + ++ 
Sbjct: 139 LRALPASIASLNRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLE-WTGIRS 197

Query: 239 LPECLGQLSSPIILNLAKTNVERIPESIIQLFVLRYLLLSYSERIQSV 286
           LP  +  L +   L +  + +  +  +I  L  L  L L     +++ 
Sbjct: 198 LPASIANLQNLKSLKIRNSPLSALGPAIHHLPKLEELDLRGCTALRNY 245

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 93.9 bits (234), Expect = 3e-22
 Identities = 47/161 (29%), Positives = 68/161 (42%), Gaps = 11/161 (6%)

Query: 113 CNKL------IAKTPNPTLMPHLNKLVILNLRGSKSLKSLPSGIFNLEFLTKLDLSGCSK 166
           C +L      +A T        L  L  L L  +  ++SLP+ I NL+ L  L +     
Sbjct: 160 CPELTELPEPLASTDASGEHQGLVNLQSLRLEWTG-IRSLPASIANLQNLKSLKIRNS-P 217

Query: 167 LKRL-LEISS-GNINWLFLRE-TAIEELPSSIERLLRLGHLDLSDCKRLKSLPSSLFKLK 223
           L  L   I     +  L LR  TA+   P        L  L L DC  L +LP  + +L 
Sbjct: 218 LSALGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLT 277

Query: 224 SLGVLNLGGCSNLQRLPECLGQLSSPIILNLAKTNVERIPE 264
            L  L+L GC NL RLP  + QL +  I+ +      ++ +
Sbjct: 278 QLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPHLQAQLDQ 318

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 80.8 bits (200), Expect = 1e-17
 Identities = 34/124 (27%), Positives = 54/124 (43%), Gaps = 4/124 (3%)

Query: 128 HLNKLVILNLRGSKSLKSLPSGIFNLEFLTKLDLSGCSKLKRL-LEISS-GNINWLFLRE 185
           +L  L  L +R S  L +L   I +L  L +LDL GC+ L+           +  L L++
Sbjct: 204 NLQNLKSLKIRNSP-LSALGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKD 262

Query: 186 -TAIEELPSSIERLLRLGHLDLSDCKRLKSLPSSLFKLKSLGVLNLGGCSNLQRLPECLG 244
            + +  LP  I RL +L  LDL  C  L  LPS + +L +  ++ +      Q       
Sbjct: 263 CSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPHLQAQLDQHRPV 322

Query: 245 QLSS 248
              +
Sbjct: 323 ARPA 326

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 48.8 bits (117), Expect = 9e-07
 Identities = 11/115 (9%), Positives = 30/115 (26%), Gaps = 21/115 (18%)

Query: 188 IEELPSSIERLLRLGHLDLSDCKRLKSLPSSLFKLKSLGVLNLGG--------------- 232
           +              +L       L+     L + +     +                  
Sbjct: 1   MGSSHHHHHHSSGRENLYFQGSTALRPYHDVLSQWQRHYNADRNRWHSAWRQANSNNPQI 60

Query: 233 ----CSNLQRLPECLGQLSSP--IILNLAKTNVERIPESIIQLFVLRYLLLSYSE 281
                  L+   + L   + P  + L L    + + P+   +L  L+++ +  + 
Sbjct: 61  ETRTGRALKATADLLEDATQPGRVALELRSVPLPQFPDQAFRLSHLQHMTIDAAG 115

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 67.9 bits (166), Expect = 7e-13
 Identities = 53/170 (31%), Positives = 78/170 (45%), Gaps = 18/170 (10%)

Query: 128 HLNKLVILNLRGSKSLKSLPSGIF-NLEFLTKLDLSGCSKLKRLLEISSG------NINW 180
           HL  L IL L  +  ++++  G F  L  L  L+L       RL  I +G       +  
Sbjct: 86  HLRHLEILQLSRNH-IRTIEIGAFNGLANLNTLELFDN----RLTTIPNGAFVYLSKLKE 140

Query: 181 LFLRETAIEELPSSI-ERLLRLGHLDLSDCKRLKSLPSSLFK-LKSLGVLNLGGCSNLQR 238
           L+LR   IE +PS    R+  L  LDL + KRL  +    F+ L +L  LNL  C NL+ 
Sbjct: 141 LWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMC-NLRE 199

Query: 239 LPECLGQLSSPIILNLAKTNVERIPESIIQ-LFVLRYLLLSYSERIQSVS 287
           +P  L  L     L+L+  ++  I     Q L  L+ L +  S +IQ + 
Sbjct: 200 IPN-LTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQS-QIQVIE 247

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 66.2 bits (162), Expect = 3e-12
 Identities = 29/243 (11%), Positives = 76/243 (31%), Gaps = 39/243 (16%)

Query: 70  LKSLPSNLSAEKLVFLKVPYSDIEQLWNGEKHYSNLNQIINATCNKLIAKTPNPTLMPHL 129
            K + +N+S E+   +++ Y      ++  + +S+L +    +  +              
Sbjct: 126 PKGISANMSDEQKQKMRMHYQKTFVDYDPREDFSDLIKDCINSDPQQK---SIKKSSRIT 182

Query: 130 NKLVILNLRGSKSLKSLPSGIFNLEFLTKLDLSGCSKLKRLLEISSGNINWLFLRETAIE 189
            K   +    +  +  +   +  L  L +  +     +   +  +  N N  + ++   +
Sbjct: 183 LKDTQIGQLSNN-ITFVSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQY--K 239

Query: 190 ELPSSIERLLRLGHLDLSDCKRLKSLPSSLFKLKSLGVLNL------------------- 230
                 + L  L  +++ +C  L  LP+ L  L  + ++N+                   
Sbjct: 240 TEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALA 299

Query: 231 --GGCSNLQRL------------PECLGQLSSPIILNLAKTNVERIPESIIQLFVLRYLL 276
                  +Q +               L ++    +L      +E    +      L  L 
Sbjct: 300 DAPVGEKIQIIYIGYNNLKTFPVETSLQKMKKLGMLECLYNQLEGKLPAFGSEIKLASLN 359

Query: 277 LSY 279
           L+Y
Sbjct: 360 LAY 362

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 61.6 bits (150), Expect = 9e-11
 Identities = 27/207 (13%), Positives = 63/207 (30%), Gaps = 34/207 (16%)

Query: 107 QIINATCNKL--IAKTPNPTLMPHLNKLVILNLRGSKSLKSLPSGIFNLEF--LTKLDLS 162
           +++    +      +   P  +                 K+        +F  L K  ++
Sbjct: 108 EVLALGSHGEKVNERLFGPKGISANMSDEQKQKMRMHYQKTFVDYDPREDFSDLIKDCIN 167

Query: 163 GCSKLKRLLEISSG--NINWLFLRETAIEELPSSIERLLRLGHLDLSDCK---------- 210
              + K + + S        +      I  +  ++ RL +L    + +            
Sbjct: 168 SDPQQKSIKKSSRITLKDTQIGQLSNNITFVSKAVMRLTKLRQFYMGNSPFVAENICEAW 227

Query: 211 ---------RLKSLPSSLFKLKSLGVLNLGGCSNLQRLPECLGQLSSPIILNLAK---TN 258
                    + K+       LK L  + +  C NL +LP  L  L    ++N+A     +
Sbjct: 228 ENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGIS 287

Query: 259 VERIPESIIQLFV------LRYLLLSY 279
            E++ +    L        ++ + + Y
Sbjct: 288 GEQLKDDWQALADAPVGEKIQIIYIGY 314

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 59.7 bits (145), Expect = 4e-10
 Identities = 21/186 (11%), Positives = 44/186 (23%), Gaps = 32/186 (17%)

Query: 96  WNGEKHYSNLNQIINATCNKLIAKTPNPTLMPHLNKLVILNLRGSKSLKSLPSGIFNLEF 155
           WN  K           + N                ++  L+L G  +   +P  I  L  
Sbjct: 60  WNFNKELDMWGAQPGVSLNSN-------------GRVTGLSLEGFGASGRVPDAIGQLTE 106

Query: 156 LTKLDLSGCSKLKRLLEISSGNINWLFLRETAIEELPSSIERLLRLGHLDLSDCKRLKSL 215
           L  L L                      +       P  I   +             K+ 
Sbjct: 107 LEVLALGSHG-----------------EKVNERLFGPKGISANMSDEQKQKMRMHYQKTF 149

Query: 216 PSSLFKLK--SLGVLNLGGCSNLQRLPECLGQLSSPIILNLAKTNVERIPESIIQLFVLR 273
                +     L    +      + + +          +     N+  + +++++L  LR
Sbjct: 150 VDYDPREDFSDLIKDCINSDPQQKSIKKSSRITLKDTQIGQLSNNITFVSKAVMRLTKLR 209

Query: 274 YLLLSY 279
              +  
Sbjct: 210 QFYMGN 215

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 59.3 bits (144), Expect = 5e-10
 Identities = 29/178 (16%), Positives = 61/178 (34%), Gaps = 23/178 (12%)

Query: 128 HLNKLVILNLRG-------SKSLKSLPSGIFNLEFLTKLDLSGCSKLKRLL-EISSGN-- 177
             + L  +NL G         SLK       N   LT +DL    KL +L  +  +    
Sbjct: 455 TGSPLSSINLMGNMLTEIPKNSLKDENENFKNTYLLTSIDLRFN-KLTKLSDDFRATTLP 513

Query: 178 -INWLFLRETAIEELPSSIERLLRLGHLDLSDCKRL------KSLPSSLFKLKSLGVLNL 230
            +  + L   +  + P+       L    + + +        +  P  +    SL  L +
Sbjct: 514 YLVGIDLSYNSFSKFPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQI 573

Query: 231 GGCSNLQRLPECLGQLSSPIILNLAK-TNVERIPESIIQLFVLRYLLLSYSERIQSVS 287
           G   +++++ E +    +  +L++    N+      +         +L Y  + Q + 
Sbjct: 574 GSN-DIRKVNEKI--TPNISVLDIKDNPNISIDLSYVCPYIEAGMYMLFYD-KTQDIR 627

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 57.0 bits (138), Expect = 3e-09
 Identities = 20/198 (10%), Positives = 63/198 (31%), Gaps = 48/198 (24%)

Query: 128 HLNKLVILNLRGSKSLKSLPSGIFNLEFLTKLDLSG---------------------CSK 166
           +L  L  + +    +L  LP+ +  L  +  ++++                        K
Sbjct: 247 NLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEK 306

Query: 167 LKRLL----EISSGNI----------NWLFLRETAIEELPSSIERLLRLGHLDLSDCKRL 212
           ++ +      + +  +            L      +E    +    ++L  L+L+   ++
Sbjct: 307 IQIIYIGYNNLKTFPVETSLQKMKKLGMLECLYNQLEGKLPAFGSEIKLASLNLAYN-QI 365

Query: 213 KSLPSSLF-KLKSLGVLNLGGCSNLQRLPE--CLGQLSSPIILNLA--------KTNVER 261
             +P++     + +  L+      L+ +P       +S    ++ +          N + 
Sbjct: 366 TEIPANFCGFTEQVENLSFAHN-KLKYIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDP 424

Query: 262 IPESIIQLFVLRYLLLSY 279
           +  +  +   +  + LS 
Sbjct: 425 LDPTPFKGINVSSINLSN 442

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 41.6 bits (98), Expect = 3e-04
 Identities = 16/107 (14%), Positives = 35/107 (32%), Gaps = 5/107 (4%)

Query: 194 SIERLLRLGHLDLSDCKRLKSLPSSLFKLKSLGVLNLGG----CSNLQRLPECLGQLSSP 249
           S+    R+  L L        +P ++ +L  L VL LG      +     P+ +    S 
Sbjct: 76  SLNSNGRVTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSD 135

Query: 250 IILNLAKTNVER-IPESIIQLFVLRYLLLSYSERIQSVSLPLARGIL 295
                 + + ++   +   +      +    +   Q  S+  +  I 
Sbjct: 136 EQKQKMRMHYQKTFVDYDPREDFSDLIKDCINSDPQQKSIKKSSRIT 182

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 65.9 bits (161), Expect = 3e-12
 Identities = 47/170 (27%), Positives = 75/170 (44%), Gaps = 18/170 (10%)

Query: 128 HLNKLVILNLRGSKSLKSLPSGIF-NLEFLTKLDLSGCSKLKRLLEISSG------NINW 180
           HL+ L +L L  +  ++ +  G F  L  L  L+L        L  I SG       +  
Sbjct: 97  HLHHLEVLQLGRNS-IRQIEVGAFNGLASLNTLELFDN----WLTVIPSGAFEYLSKLRE 151

Query: 181 LFLRETAIEELPSSI-ERLLRLGHLDLSDCKRLKSLPSSLFK-LKSLGVLNLGGCSNLQR 238
           L+LR   IE +PS    R+  L  LDL + K+L+ +    F+ L +L  LNLG C N++ 
Sbjct: 152 LWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMC-NIKD 210

Query: 239 LPECLGQLSSPIILNLAKTNVERIPESIIQ-LFVLRYLLLSYSERIQSVS 287
           +P  L  L     L ++  +   I       L  L+ L +  S ++  + 
Sbjct: 211 MPN-LTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNS-QVSLIE 258

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 65.3 bits (159), Expect = 6e-12
 Identities = 33/149 (22%), Positives = 54/149 (36%), Gaps = 17/149 (11%)

Query: 127 PHLNKLVILNLRGSKSLKSLPSGIFNLEFLTKLDLSGCSKLKRLLEISSGNINWLFLRET 186
               +L  L + G++ L SLP     L  L+       + L  L       +  L++   
Sbjct: 78  ALPPELRTLEVSGNQ-LTSLPVLPPGLLELSIFSNPL-THLPALPS----GLCKLWIFGN 131

Query: 187 AIEELPSSIERLLRLGHLDLSDCKRLKSLPSSLFKLKSLGVLNLGGCSNLQRLPECLGQL 246
            +  LP     L     L +SD  +L SLP+   +L  L   N      L  LP     L
Sbjct: 132 QLTSLPVLPPGLQ---ELSVSDN-QLASLPALPSELCKLWAYNN----QLTSLPMLPSGL 183

Query: 247 SSPIILNLAKTNVERIPESIIQLFVLRYL 275
                L+++   +  +P    +L+ L   
Sbjct: 184 QE---LSVSDNQLASLPTLPSELYKLWAY 209

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 61.4 bits (149), Expect = 1e-10
 Identities = 52/230 (22%), Positives = 78/230 (33%), Gaps = 24/230 (10%)

Query: 69  PLKSLPSNLSAEKLVFLKVPYSDIEQLWNGEKHYSNLNQIINATCNKLIAKTPNPTLMPH 128
            L SLP+  S  +L  L    + +  L       S L Q ++ + N+L      PTL   
Sbjct: 152 QLASLPALPS--ELCKLWAYNNQLTSL---PMLPSGL-QELSVSDNQL---ASLPTLPSE 202

Query: 129 LNKLVILNLRGSKSLKSLPSGIFNLEFLTKLDLSGCSKLKRLLEISSGNINWLFLRETAI 188
           L KL   N R    L SLP+    L    +L +SG  +L  L       +  L +    +
Sbjct: 203 LYKLWAYNNR----LTSLPALPSGL---KELIVSGN-RLTSLPV-LPSELKELMVSGNRL 253

Query: 189 EELPSSIERLLRLGHLDLSDCKRLKSLPSSLFKLKSLGVLNLGGCSNLQRLPECLGQ-LS 247
             LP     LL    L +    +L  LP SL  L S   +NL G   L        + ++
Sbjct: 254 TSLPMLPSGLL---SLSVYRN-QLTRLPESLIHLSSETTVNLEGN-PLSERTLQALREIT 308

Query: 248 SPIILNLAKTNVERIPESIIQLFVLRYLLLSYSERIQSVSLPLARGILED 297
           S    +      +    S  +     +L  +          P        
Sbjct: 309 SAPGYSGPIIRFDMAGASAPRETRALHLAAADWLVPAREGEPAPADRWHM 358

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 56.1 bits (135), Expect = 6e-09
 Identities = 24/117 (20%), Positives = 40/117 (34%), Gaps = 12/117 (10%)

Query: 156 LTKLDLSGCSKLKRLLEISSGNINWLFLRETAIEELPSSIERLLRLGHLDLSDCKRLKSL 215
              L++     L  L +    +I  L + +  +  LP+    L     L++S   +L SL
Sbjct: 42  NAVLNVGES-GLTTLPDCLPAHITTLVIPDNNLTSLPALPPELR---TLEVSGN-QLTSL 96

Query: 216 PSSLFKLKSLGVLNLGGCSNLQRLPECLGQLSSPIILNLAKTNVERIPESIIQLFVL 272
           P     L  L + +      L  LP     L     L +    +  +P     L  L
Sbjct: 97  PVLPPGLLELSIFSN----PLTHLPALPSGLCK---LWIFGNQLTSLPVLPPGLQEL 146

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 50.3 bits (120), Expect = 4e-07
 Identities = 23/119 (19%), Positives = 46/119 (38%), Gaps = 7/119 (5%)

Query: 167 LKRLLEISSGNINWLFLRETAIEELPSSIERLLRLGHLDLSDCKRLKSLPSSLFKLKSLG 226
           ++++    +     L + E+ +  LP  +   +    L + D   L SLP+   +L++L 
Sbjct: 31  VQKMRACLNNGNAVLNVGESGLTTLPDCLPAHIT--TLVIPDN-NLTSLPALPPELRTLE 87

Query: 227 VLNLGGCSNLQRLPECLGQLSSPIILNLAKTNVERIPESIIQLFVLRYLLLSYSERIQS 285
           V        L  LP     L    I +   T++  +P  + +L++    L S       
Sbjct: 88  VSGN----QLTSLPVLPPGLLELSIFSNPLTHLPALPSGLCKLWIFGNQLTSLPVLPPG 142

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 63.6 bits (155), Expect = 2e-11
 Identities = 39/170 (22%), Positives = 65/170 (38%), Gaps = 17/170 (10%)

Query: 128 HLNKLVILNLRGSKSLKSLPSGIF-NLEFLTKLDLSGCSKLKRLLEISSG------NINW 180
            L  L  L +  +  L  +    F  L  L +L L  C     L  I +        +  
Sbjct: 126 DLYNLKSLEVGDND-LVYISHRAFSGLNSLEQLTLEKC----NLTSIPTEALSHLHGLIV 180

Query: 181 LFLRETAIEELPSSI-ERLLRLGHLDLSDCKRLKSLPSSLFKLKSLGVLNLGGCSNLQRL 239
           L LR   I  +     +RL RL  L++S    L ++  +     +L  L++  C NL  +
Sbjct: 181 LRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHC-NLTAV 239

Query: 240 PEC-LGQLSSPIILNLAKTNVERIPESIIQ-LFVLRYLLLSYSERIQSVS 287
           P   +  L     LNL+   +  I  S++  L  L+ + L    ++  V 
Sbjct: 240 PYLAVRHLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGG-QLAVVE 288

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 63.6 bits (155), Expect = 2e-11
 Identities = 51/287 (17%), Positives = 96/287 (33%), Gaps = 32/287 (11%)

Query: 19  RLNLSTFTKMPKLRFLKFYSSSFNGENKCKVSYLQDPRFAEVKYFHWHGYPLKSLPSNLS 78
           + + S    +  L   +F  +  +      +                    ++ +     
Sbjct: 245 KFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLV--SVTIERVKDFSY 302

Query: 79  AEKLVFLKVPYSDIEQ-----LWNGEKHYSNLNQIINATC--------------NKLIAK 119
                 L++      Q     L + ++     N+  NA                N L  K
Sbjct: 303 NFGWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFK 362

Query: 120 TPNPTLMPHLNKLVILNLRGSKSLKSLPSGIFNLEFLTKLDLSGCSKLKRLLEISS---- 175
                       L  L+L     + ++ S    LE L  LD      LK++ E S     
Sbjct: 363 GCCSQSDFGTTSLKYLDLSF-NGVITMSSNFLGLEQLEHLDFQHS-NLKQMSEFSVFLSL 420

Query: 176 GNINWLFLRETAIEELPSSI-ERLLRLGHLDLSDCKRLKSLPSSLF-KLKSLGVLNLGGC 233
            N+ +L +  T      + I   L  L  L ++     ++    +F +L++L  L+L  C
Sbjct: 421 RNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQC 480

Query: 234 SNLQRLPE-CLGQLSSPIILNLAKTNVERIPESIIQ-LFVLRYLLLS 278
             L++L       LSS  +LN+A   ++ +P+ I   L  L+ + L 
Sbjct: 481 -QLEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQKIWLH 526

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 42.4 bits (100), Expect = 1e-04
 Identities = 32/185 (17%), Positives = 61/185 (32%), Gaps = 13/185 (7%)

Query: 101 HYSNLNQIINATCNKLIAKTPNPTLMPHLNKLVILNLRGSK---SLKSLPSGIFNLEFLT 157
               L          L  +  + + +  L  L I   R +     L  +      L  ++
Sbjct: 228 EVHRLVLGEFRNEGNL--EKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVS 285

Query: 158 KLDLSGCSKLKRLLEIS-SGNINWLFLRETAIEELPSSIERLLRLGHLDLSDCKRLKSLP 216
              L   + ++R+ + S +     L L      + P+   +L  L  L  +  K   +  
Sbjct: 286 SFSLVSVT-IERVKDFSYNFGWQHLELVNCKFGQFPTL--KLKSLKRLTFTSNK-GGNAF 341

Query: 217 SSLFKLKSLGVLNLGGC--SNLQRLPECLGQLSSPIILNLAKTNVERIPESIIQLFVLRY 274
           S    L SL  L+L     S      +     +S   L+L+   V  +  + + L  L +
Sbjct: 342 S-EVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEH 400

Query: 275 LLLSY 279
           L   +
Sbjct: 401 LDFQH 405

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 42.0 bits (99), Expect = 2e-04
 Identities = 34/159 (21%), Positives = 57/159 (35%), Gaps = 18/159 (11%)

Query: 128 HLNKLVILNLRGSKSLKSLPSGIF--NLEFLTKLDLSGCSKLKRL-------LEISSGNI 178
           HL  L  LN+  +  ++S     +  NL  L  LDLS   K++ +       L       
Sbjct: 122 HLKTLKELNVAHNL-IQSFKLPEYFSNLTNLEHLDLSSN-KIQSIYCTDLRVLHQMPLLN 179

Query: 179 NWLFLRETAIEELPSSIERLLRLGHLDLSDCKRLKSLPSSLF-KLKSLGVLNL-----GG 232
             L L    +  +     + +RL  L L +     ++  +    L  L V  L       
Sbjct: 180 LSLDLSLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRN 239

Query: 233 CSNLQRLPE-CLGQLSSPIILNLAKTNVERIPESIIQLF 270
             NL++  +  L  L +  I       ++   + II LF
Sbjct: 240 EGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLF 278

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 63.4 bits (154), Expect = 3e-11
 Identities = 28/195 (14%), Positives = 60/195 (30%), Gaps = 36/195 (18%)

Query: 121 PNPTLMPHLNKLVILNLRGSKSLKSLPSGIFNLEFLTKLDLSGCSKLKRLLEISSGNINW 180
                   L   +    +    +      +   + L   DL   +  +          + 
Sbjct: 363 GRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSDLLQDAINRNPEMKPIKKDSR 422

Query: 181 LFLRET-------AIEELPSSIERLLRLGHLDLSDCK-------------------RLKS 214
           + L++T        I  +  +I+RL +L  +  ++                     + ++
Sbjct: 423 ISLKDTQIGNLTNRITFISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYEN 482

Query: 215 LPSSLFKLKSLGVLNLGGCSNLQRLPECLGQLSSPIILNLA----------KTNVERIPE 264
              S   LK L  + L  C N+ +LP+ L  L     LN+A          K +  R+ +
Sbjct: 483 EELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLAD 542

Query: 265 SIIQLFVLRYLLLSY 279
                  ++   + Y
Sbjct: 543 DEDTGPKIQIFYMGY 557

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 59.5 bits (144), Expect = 5e-10
 Identities = 43/237 (18%), Positives = 81/237 (34%), Gaps = 30/237 (12%)

Query: 70  LKSLPSNLSAEKLVFLKV---PYSDIEQLWNGEKHYSNLNQIINATCNKL----IAKTPN 122
           LK +P+  +A+ +  +      Y+ I           +  + INA+   L    I K P 
Sbjct: 631 LKYIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQKFP- 689

Query: 123 PTLMPHLNKLVILNLRG-------SKSLKSLPSGIFNLEFLTKLDLSGCSKLKRL-LEIS 174
             L    + +  + L           SLK       N   LT +DL    KL  L  +  
Sbjct: 690 TELFATGSPISTIILSNNLMTSIPENSLKPKDGNYKNTYLLTTIDLRFN-KLTSLSDDFR 748

Query: 175 SG---NINWLFLRETAIEELPSSIERLLRLGHLDL------SDCKRLKSLPSSLFKLKSL 225
           +     ++ + +        P+      +L    +         + L+  P+ +    SL
Sbjct: 749 ATTLPYLSNMDVSYNCFSSFPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSL 808

Query: 226 GVLNLGGCSNLQRLPECLGQLSSPIILNLAKTNVERIPE-SIIQLFVLRYLLLSYSE 281
             L +G   +++++ E L       IL++A      I   S+         +L Y +
Sbjct: 809 IQLQIGSN-DIRKVDEKL--TPQLYILDIADNPNISIDVTSVCPYIEAGMYVLLYDK 862

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 57.6 bits (139), Expect = 2e-09
 Identities = 22/197 (11%), Positives = 51/197 (25%), Gaps = 27/197 (13%)

Query: 96  WNGEKHYSNLNQIINATCNKLIAKTPNPTLMPHLNKLVILNLRGSKSLKSLPSGIFNLEF 155
           WN  K             +             +  ++  L+L G  +   +P  I  L  
Sbjct: 302 WNFNKELDMWGDQPGVDLD-------------NNGRVTGLSLAGFGAKGRVPDAIGQLTE 348

Query: 156 LTKLDLSGCSKLKRLLEISSGNINWLFLRETAIEELPSSIERL----------LRLGHLD 205
           L  L             +         + E     +    +++            L    
Sbjct: 349 LKVLSFGTH-SETVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSDLLQDA 407

Query: 206 LSDCKRLKSLPSSLFKLKSLGVLNLGGCSN-LQRLPECLGQLSSPIILNLAKTNVERIPE 264
           ++    +K +        SL    +G  +N +  + + + +L+   I+  A +       
Sbjct: 408 INRNPEMKPIKKDSR--ISLKDTQIGNLTNRITFISKAIQRLTKLQIIYFANSPFTYDNI 465

Query: 265 SIIQLFVLRYLLLSYSE 281
           ++            Y  
Sbjct: 466 AVDWEDANSDYAKQYEN 482

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 56.4 bits (136), Expect = 6e-09
 Identities = 21/179 (11%), Positives = 48/179 (26%), Gaps = 26/179 (14%)

Query: 123 PTLMPHLNKLVILNLRG---------SKSLKSLPSGIFNLEFLTKLDLSGCSKLKRLLEI 173
           P  +  L +L  LN+                 L         +    +     L+     
Sbjct: 508 PDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYN-NLEEFPAS 566

Query: 174 SS----GNINWLFLRETAIEELPSSIERLLRLGHLDLSDCKRLKSLPSSLFK-LKSLGVL 228
           +S      +  L      +  L  +    ++L  L L    +++ +P         +  L
Sbjct: 567 ASLQKMVKLGLLDCVHNKVRHLE-AFGTNVKLTDLKLDYN-QIEEIPEDFCAFTDQVEGL 624

Query: 229 NLGGCSNLQRLPEC--LGQLSSPIILNLAKTNVERIPESI------IQLFVLRYLLLSY 279
                  L+ +P       +     ++ +   +     +I       +      + LSY
Sbjct: 625 GFSHN-KLKYIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSY 682

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 46.8 bits (111), Expect = 5e-06
 Identities = 26/173 (15%), Positives = 62/173 (35%), Gaps = 3/173 (1%)

Query: 128 HLNKLVILNLRGSKSLKSLPSGIFNLEFLTKLDLSGCSKLKRLLEISSGNINWLFLRETA 187
            L K   + ++  ++ + +            LD          +  +  ++NW F +E  
Sbjct: 250 KLTKDANVPIQLKETAEYIKDYKALKAIWEALDGKNWRYYSGTINNTIHSLNWNFNKELD 309

Query: 188 I--EELPSSIERLLRLGHLDLSDCKRLKSLPSSLFKLKSLGVLNLGGCSNLQRLPECLGQ 245
           +  ++    ++   R+  L L+       +P ++ +L  L VL+ G   +        G 
Sbjct: 310 MWGDQPGVDLDNNGRVTGLSLAGFGAKGRVPDAIGQLTELKVLSFGTH-SETVSGRLFGD 368

Query: 246 LSSPIILNLAKTNVERIPESIIQLFVLRYLLLSYSERIQSVSLPLARGILEDT 298
                 ++  + +  R+    + L   + L LS   +      P  + I +D+
Sbjct: 369 EELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSDLLQDAINRNPEMKPIKKDS 421

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 62.3 bits (151), Expect = 6e-11
 Identities = 37/176 (21%), Positives = 62/176 (35%), Gaps = 24/176 (13%)

Query: 107 QIINATCNKLIAKTPNPTLMPHLNKLVILNLRGSKSLKSLPSGIFNLEFLTKLDLSGCSK 166
            ++  T N L      P L   L  L   + R    L +LP    +L     LD+    +
Sbjct: 83  TVLEITQNAL---ISLPELPASLEYLDACDNR----LSTLPELPASL---KHLDVDNN-Q 131

Query: 167 LKRLLEISSGNINWLFLRETAIEELPSSIERLLRLGHLDLSDCKRLKSLPSSLFKLKSLG 226
           L  L E     + ++      +  LP     L  L    + +  +L  LP     L++L 
Sbjct: 132 LTMLPE-LPALLEYINADNNQLTMLPELPTSLEVL---SVRNN-QLTFLPELPESLEALD 186

Query: 227 VLNLGGCSNLQRLPECLGQLSS----PIILNLAKTNVERIPESIIQLFVLRYLLLS 278
           V      + L+ LP    +        I     +  +  IPE+I+ L     ++L 
Sbjct: 187 VST----NLLESLPAVPVRNHHSEETEIFFRCRENRITHIPENILSLDPTCTIILE 238

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 61.9 bits (150), Expect = 7e-11
 Identities = 29/161 (18%), Positives = 55/161 (34%), Gaps = 17/161 (10%)

Query: 123 PTLMPHLNKLVILNLRGSKSLKSLPSGIFN-LEFLTKLDLSGCSK---LKRLLEISSGNI 178
             ++P  N   +       ++    +  F+  +   K  L G ++   +  L E      
Sbjct: 2   SIMLPINNNFSLSQNSFYNTISGTYADYFSAWDKWEKQALPGENRNEAVSLLKECLINQF 61

Query: 179 NWLFLRETAIEELPSSIERLLRLGHLDLSDCKRLKSLPSSLFKLKSLGVLNLGGCSNLQR 238
           + L L    +  LP ++   +    L+++    L SLP     L+ L   +      L  
Sbjct: 62  SELQLNRLNLSSLPDNLPPQIT--VLEITQN-ALISLPELPASLEYLDACDN----RLST 114

Query: 239 LPECLGQLSSPIILNLAKTNVERIPESIIQLFVLRYLLLSY 279
           LPE    L     L++    +  +PE       L Y+    
Sbjct: 115 LPELPASLKH---LDVDNNQLTMLPELPAL---LEYINADN 149

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 56.9 bits (137), Expect = 3e-09
 Identities = 29/159 (18%), Positives = 51/159 (32%), Gaps = 15/159 (9%)

Query: 124 TLMPHLNKLVILNLRGSKSLKSLPSGIFNLEFLTKLDLSGCSKLKRLLEISSGNINWLFL 183
           TL      L  L++  ++ L  LP     LE    ++     +L  L E    ++  L +
Sbjct: 114 TLPELPASLKHLDVDNNQ-LTMLPELPALLE---YINADNN-QLTMLPE-LPTSLEVLSV 167

Query: 184 RETAIEELPSSIERLLRLGHLDLSDCKRLKSLPSSLFKLKSL----GVLNLGGCSNLQRL 239
           R   +  LP   E L     LD+S    L+SLP+   +                  +  +
Sbjct: 168 RNNQLTFLPELPESL---EALDVSTN-LLESLPAVPVRNHHSEETEIFFRCREN-RITHI 222

Query: 240 PECLGQLSSPIILNLAKTNVERIPESIIQLFVLRYLLLS 278
           PE +  L     + L    +       +     +     
Sbjct: 223 PENILSLDPTCTIILEDNPLSSRIRESLSQQTAQPDYHG 261

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 45.3 bits (107), Expect = 2e-05
 Identities = 45/207 (21%), Positives = 69/207 (33%), Gaps = 24/207 (11%)

Query: 70  LKSLPSNLSAEKLVFLKVPYSDIEQLWNGEKHYSNLNQIINATCNKLIAKTPNPTLMPHL 129
           L +LP   +   L  L V  + +  L    +  + L + INA  N+L   T  P L   L
Sbjct: 112 LSTLPELPA--SLKHLDVDNNQLTML---PELPALL-EYINADNNQL---TMLPELPTSL 162

Query: 130 NKLVILNLRGSKSLKSLPSGIFNLEFLTKLDLSGCSKLKRL------LEISSGNINWLFL 183
             L + N +    L  LP    +LE    LD+S    L+ L         S     +   
Sbjct: 163 EVLSVRNNQ----LTFLPELPESLE---ALDVSTN-LLESLPAVPVRNHHSEETEIFFRC 214

Query: 184 RETAIEELPSSIERLLRLGHLDLSDCKRLKSLPSSLFKLKSLGVLNLGGCSNLQRLPECL 243
           RE  I  +P +I  L     + L D   L S        ++      G            
Sbjct: 215 RENRITHIPENILSLDPTCTIILEDN-PLSSRIRESLSQQTAQPDYHGPRIYFSMSDGQQ 273

Query: 244 GQLSSPIILNLAKTNVERIPESIIQLF 270
             L  P+   +     E     + Q++
Sbjct: 274 NTLHRPLADAVTAWFPENKQSDVSQIW 300

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 60.8 bits (148), Expect = 8e-11
 Identities = 46/149 (30%), Positives = 73/149 (48%), Gaps = 17/149 (11%)

Query: 128 HLNKLVILNLRGSKSLKSLPSGIFN-LEFLTKLDLSGCSKLKRLLEISSG------NINW 180
            L KL +L L     L++LP+GIF  L+ L  L ++      +L  +  G      N+  
Sbjct: 59  RLTKLRLLYL-NDNKLQTLPAGIFKELKNLETLWVTD----NKLQALPIGVFDQLVNLAE 113

Query: 181 LFLRETAIEELPSSI-ERLLRLGHLDLSDCKRLKSLPSSLF-KLKSLGVLNLGGCSNLQR 238
           L L    ++ LP  + + L +L +L L   + L+SLP  +F KL SL  L L   + L+R
Sbjct: 114 LRLDRNQLKSLPPRVFDSLTKLTYLSLGYNE-LQSLPKGVFDKLTSLKELRL-YNNQLKR 171

Query: 239 LPECL-GQLSSPIILNLAKTNVERIPESI 266
           +PE    +L+    L L    ++R+PE  
Sbjct: 172 VPEGAFDKLTELKTLKLDNNQLKRVPEGA 200

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 45.7 bits (109), Expect = 7e-06
 Identities = 43/162 (26%), Positives = 77/162 (47%), Gaps = 27/162 (16%)

Query: 140 SKSLKSLPSGIFNLEFLTKLDLSGCSKLKRLLEISSG------NINWLFLRETAIEELPS 193
           SK L ++PS I       KLDL       +L  + S        +  L+L +  ++ LP+
Sbjct: 25  SKKLTAIPSNIPA--DTKKLDLQS----NKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPA 78

Query: 194 SI-ERLLRLGHLDLSDCKRLKSLPSSLF-KLKSLGVLNLGGCSN-LQRLPE----CLGQL 246
            I + L  L  L ++D  +L++LP  +F +L +L  L L    N L+ LP      L +L
Sbjct: 79  GIFKELKNLETLWVTD-NKLQALPIGVFDQLVNLAELRLD--RNQLKSLPPRVFDSLTKL 135

Query: 247 SSPIILNLAKTNVERIPESII-QLFVLRYLLLSYSERIQSVS 287
           +    L+L    ++ +P+ +  +L  L+ L L  + +++ V 
Sbjct: 136 T---YLSLGYNELQSLPKGVFDKLTSLKELRLYNN-QLKRVP 173

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 58.5 bits (142), Expect = 4e-10
 Identities = 53/221 (23%), Positives = 87/221 (39%), Gaps = 22/221 (9%)

Query: 70  LKSLPSNLSAEKLVFLKVPYSDIEQLWNGE-KHYSNLNQIINATCNKLIAKTPNPTLMPH 128
           L+++P  + A     + +  + I  +     +   NL  I+    N L     +      
Sbjct: 23  LQAVPVGIPAA-SQRIFLHGNRISHVPAASFRACRNL-TILWLHSNVL--ARIDAAAFTG 78

Query: 129 LNKLVILNLRGSKSLKSLPSGIF-NLEFLTKLDLSGCSKLKRLLEISSG------NINWL 181
           L  L  L+L  +  L+S+    F  L  L  L L  C     L E+  G       + +L
Sbjct: 79  LALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRC----GLQELGPGLFRGLAALQYL 134

Query: 182 FLRETAIEELPSSI-ERLLRLGHLDLSDCKRLKSLPSSLFK-LKSLGVLNLGGCSNLQRL 239
           +L++ A++ LP      L  L HL L    R+ S+P   F+ L SL  L L     +  +
Sbjct: 135 YLQDNALQALPDDTFRDLGNLTHLFLHG-NRISSVPERAFRGLHSLDRLLLHQN-RVAHV 192

Query: 240 PE-CLGQLSSPIILNLAKTNVERIPESIIQ-LFVLRYLLLS 278
                  L   + L L   N+  +P   +  L  L+YL L+
Sbjct: 193 HPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLN 233

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 51.9 bits (125), Expect = 7e-08
 Identities = 40/154 (25%), Positives = 68/154 (44%), Gaps = 10/154 (6%)

Query: 140 SKSLKSLPSGIFNLEFLTKLDLSGC--SKLKRLLEISSGNINWLFLRETAIEELPSSI-E 196
            + L+++P GI       ++ L G   S +      +  N+  L+L    +  + ++   
Sbjct: 20  QQGLQAVPVGIP--AASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFT 77

Query: 197 RLLRLGHLDLSDCKRLKSLPSSLFK-LKSLGVLNLGGCSNLQRLPE-CLGQLSSPIILNL 254
            L  L  LDLSD  +L+S+  + F  L  L  L+L  C  LQ L       L++   L L
Sbjct: 78  GLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRC-GLQELGPGLFRGLAALQYLYL 136

Query: 255 AKTNVERIPESIIQ-LFVLRYLLLSYSERIQSVS 287
               ++ +P+   + L  L +L L  + RI SV 
Sbjct: 137 QDNALQALPDDTFRDLGNLTHLFLHGN-RISSVP 169

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 59.2 bits (144), Expect = 5e-10
 Identities = 35/142 (24%), Positives = 59/142 (41%), Gaps = 13/142 (9%)

Query: 130 NKLVILNLRGSKSLKSLPSGIFNLEFLTKLDLSGCSKLKRLLEISSGNINWLFLRETAIE 189
           N  +   LR S +L  +P    N++  T+   +   + +R     +G       RE A+ 
Sbjct: 10  NTFLQEPLRHSSNLTEMPVEAENVKSKTEYYNAWS-EWERNAPPGNGE-----QREMAVS 63

Query: 190 ELPSSIERLLRLGHLDLSDCKRLKSLPSSLFKLKSLGVLNLGGCSNLQRLPECLGQLSSP 249
            L   ++R      L+L++   L SLP     L+SL       C++L  LPE    L S 
Sbjct: 64  RLRDCLDRQAH--ELELNNLG-LSSLPELPPHLESLVA----SCNSLTELPELPQSLKSL 116

Query: 250 IILNLAKTNVERIPESIIQLFV 271
           ++ N     +  +P  +  L V
Sbjct: 117 LVDNNNLKALSDLPPLLEYLGV 138

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 53.8 bits (130), Expect = 2e-08
 Identities = 35/176 (19%), Positives = 67/176 (38%), Gaps = 24/176 (13%)

Query: 127 PHLNKLVILNLRGSKSLKSLPSGIFNLEFL-------TKL-DLSGCSKLKRL-------- 170
            + + L I+++  +  LK LP    +LEF+        +L +L     L  +        
Sbjct: 150 QNSSFLKIIDVDNNS-LKKLPDLPPSLEFIAAGNNQLEELPELQNLPFLTAIYADNNSLK 208

Query: 171 -LEISSGNINWLFLRETAIEELPSSIERLLRLGHLDLSDCKRLKSLPSSLFKLKSLGVLN 229
            L     ++  +      +EELP  ++ L  L  +   +   LK+LP     L++L V +
Sbjct: 209 KLPDLPLSLESIVAGNNILEELPE-LQNLPFLTTIYADNN-LLKTLPDLPPSLEALNVRD 266

Query: 230 LGGCSNLQRLPECLGQLSSPIILNLAKTNVERIPESIIQLFVLRYLLLSYSERIQS 285
                 L  LPE    L+   +     + +  +P ++  L      + S  +   S
Sbjct: 267 N----YLTDLPELPQSLTFLDVSENIFSGLSELPPNLYYLNASSNEIRSLCDLPPS 318

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 52.7 bits (127), Expect = 6e-08
 Identities = 19/122 (15%), Positives = 38/122 (31%), Gaps = 15/122 (12%)

Query: 172 EISSGNINWLFLRETAIEELPSSIERLLRLGHLDLSDCKRLKSLPSSLFKLKSLGVLNLG 231
            +S+  +       + + E+P   E +        +  +  ++ P    + + + V  L 
Sbjct: 7   NVSNTFLQEPLRHSSNLTEMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLR 66

Query: 232 GCS------------NLQRLPECLGQLSSPIILNLAKTNVERIPESIIQLFVLRYLLLSY 279
            C              L  LPE    L S   L  +  ++  +PE    L  L     + 
Sbjct: 67  DCLDRQAHELELNNLGLSSLPELPPHLES---LVASCNSLTELPELPQSLKSLLVDNNNL 123

Query: 280 SE 281
             
Sbjct: 124 KA 125

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 49.2 bits (118), Expect = 8e-07
 Identities = 47/218 (21%), Positives = 71/218 (32%), Gaps = 38/218 (17%)

Query: 70  LKSLPSNLSAEKLVFLKVPYSDIEQLWNGEKHYSNLNQIINATCNKLIAKTPNPTLMPHL 129
           LK LP       L  +    + +E+L    ++   L   I A  N L      P L P L
Sbjct: 207 LKKLPDLPL--SLESIVAGNNILEEL-PELQNLPFL-TTIYADNNLL---KTLPDLPPSL 259

Query: 130 NKLVILNLRGSKSLKSLPSGIFNLEFLTKLDLSGCS------KLKRL---------LEIS 174
             L + +      L  LP    +L FL   +            L  L         L   
Sbjct: 260 EALNVRDNY----LTDLPELPQSLTFLDVSENIFSGLSELPPNLYYLNASSNEIRSLCDL 315

Query: 175 SGNINWLFLRETAIEELPSSIERLLRLGHLDLSDCKRLKSLPSSLFKLKSLGVLNLGGCS 234
             ++  L +    + ELP+   RL RL     S    L  +P     LK L V       
Sbjct: 316 PPSLEELNVSNNKLIELPALPPRLERL---IASFN-HLAEVPELPQNLKQLHVEYN---- 367

Query: 235 NLQRLPECLGQLSSPIILNLAKTNVERIPESIIQLFVL 272
            L+  P+    +    + +    ++  +PE    L  L
Sbjct: 368 PLREFPDIPESVEDLRMNS----HLAEVPELPQNLKQL 401

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 46.1 bits (110), Expect = 9e-06
 Identities = 32/160 (20%), Positives = 50/160 (31%), Gaps = 18/160 (11%)

Query: 124 TLMPHLNKLVILNLRGSKSLKSLPSGIFNLEFLTKLDLSGCSKLKRLLEISSGNINWLFL 183
           +L      L  LN+  +K L  LP+    LE   +L  S    L  + E    N+  L +
Sbjct: 311 SLCDLPPSLEELNVSNNK-LIELPALPPRLE---RLIASFN-HLAEVPE-LPQNLKQLHV 364

Query: 184 RETAIEELPSSIERLLRLGHLDLSDCKRLKSLPSSLFKLKSLGVLNLGGCSNLQRLPECL 243
               + E P   E +      DL     L  +P     LK L V      + L+  P+  
Sbjct: 365 EYNPLREFPDIPESVE-----DLRMNSHLAEVPELPQNLKQLHV----ETNPLREFPDIP 415

Query: 244 GQLSSPIILNLAKTNVERIPESIIQLFVLRYLLLSYSERI 283
             +     L +    V    E   +        +      
Sbjct: 416 ESVED---LRMNSERVVDPYEFAHETTDKLEDDVFEHHHH 452

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score = 58.3 bits (142), Expect = 6e-10
 Identities = 33/182 (18%), Positives = 65/182 (35%), Gaps = 28/182 (15%)

Query: 103 SNLNQIINATCNKLIAKTPNPTLMPHLNKLVILNLRGSK--SLKSLPSGIFNLEFLTKLD 160
           S+     +      +    +        ++  L+L G        +PS + NL +L  L 
Sbjct: 25  SSWLPTTDCCNRTWLGVLCDTDT--QTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLY 82

Query: 161 LSGCSKLKRLLEISSGNINWLFLRETAIEELPSSIERLLRLGHLDLSDCKRLKSLPSSLF 220
           + G + L        G I             P +I +L +L +L ++      ++P  L 
Sbjct: 83  IGGINNL-------VGPI-------------PPAIAKLTQLHYLYITHTNVSGAIPDFLS 122

Query: 221 KLKSLGVLNLGGCSNLQ-RLPECLGQLSSPIILNLAKTNVE-RIPESIIQLFVL-RYLLL 277
           ++K+L  L+      L   LP  +  L + + +      +   IP+S      L   + +
Sbjct: 123 QIKTLVTLDFSYN-ALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTI 181

Query: 278 SY 279
           S 
Sbjct: 182 SR 183

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score = 56.8 bits (138), Expect = 2e-09
 Identities = 35/170 (20%), Positives = 59/170 (34%), Gaps = 35/170 (20%)

Query: 129 LNKLVILNLRGSKSLKSLPSGIFNLEFLTKLDLSG-------------CSKLKRLLEIS- 174
           +  LV L+   +    +LP  I +L  L  +   G              SKL   + IS 
Sbjct: 124 IKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISR 183

Query: 175 ---SGNINWLFLRETAIEELPSSIERLLRLGHLDLSDCKRLKSLPSSLFKLKSLGVLNLG 231
              +G I             P +   L  L  +DLS               K+   ++L 
Sbjct: 184 NRLTGKI-------------PPTFANL-NLAFVDLSRNMLEGDASVLFGSDKNTQKIHLA 229

Query: 232 GCSNLQ-RLPECLGQLSSPIILNLAKTNVE-RIPESIIQLFVLRYLLLSY 279
              +L   L + +G   +   L+L    +   +P+ + QL  L  L +S+
Sbjct: 230 KN-SLAFDLGK-VGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSF 277

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 58.3 bits (141), Expect = 8e-10
 Identities = 30/168 (17%), Positives = 58/168 (34%), Gaps = 33/168 (19%)

Query: 128 HLNKLVILNLRGSKSLKSLPSGIF-NLEFLTKLDLSGCSKLKRLLEISSG------NINW 180
               L  + +  +  L+ + + +F NL  L ++ +   + L     I+        N+ +
Sbjct: 52  GFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLL---YINPEAFQNLPNLQY 108

Query: 181 LFLRETAIEELPSSI-ERLLRLGHLDLSDCKRLKSLPSSLFKLKSLGVLNLGGCSNLQRL 239
           L +  T I+ LP       L+   LD+ D   + ++  + F          G        
Sbjct: 109 LLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFV---------GLSFESV-- 157

Query: 240 PECLGQLSSPIILNLAKTNVERIPESIIQLFVLRYLLLSYSERIQSVS 287
                      IL L K  ++ I  S      L  L LS +  ++ + 
Sbjct: 158 -----------ILWLNKNGIQEIHNSAFNGTQLDELNLSDNNNLEELP 194

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 55.6 bits (134), Expect = 6e-09
 Identities = 41/184 (22%), Positives = 74/184 (40%), Gaps = 14/184 (7%)

Query: 103 SNLNQIINATCNKLIAKTPNPTLMPHLNKLVILNLRGSKSLKSLPSGIF-NLEFLTKLDL 161
             L++I     N L     NP    +L  L  L +  +  +K LP     +      LD+
Sbjct: 79  PKLHEIRIEKANNL--LYINPEAFQNLPNLQYLLISNTG-IKHLPDVHKIHSLQKVLLDI 135

Query: 162 SGCSKLKRLLEIS----SGNINWLFLRETAIEELPSSIERLLRLGHLDLSDCKRLKSLPS 217
                +  +   S    S     L+L +  I+E+ +S     +L  L+LSD   L+ LP+
Sbjct: 136 QDNINIHTIERNSFVGLSFESVILWLNKNGIQEIHNSAFNGTQLDELNLSDNNNLEELPN 195

Query: 218 SLFK-LKSLGVLNLGGCSNLQRLPE-CLGQLSSPIILNLAKTNVERIPESIIQLFVLRYL 275
            +F       +L++     +  LP   L  L      +    N++++P ++ +L  L   
Sbjct: 196 DVFHGASGPVILDISRT-RIHSLPSYGLENLKKLRARST--YNLKKLP-TLEKLVALMEA 251

Query: 276 LLSY 279
            L+Y
Sbjct: 252 SLTY 255

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 57.7 bits (140), Expect = 1e-09
 Identities = 20/157 (12%), Positives = 48/157 (30%), Gaps = 10/157 (6%)

Query: 127 PHLNKLVILNLRGSKSLKSLPSGIFNLEFLTKLDLSGC--SKLKRLLEISSGNINWLFLR 184
                +  L+   +  +  +            + L+    + L+ L E     + +L L+
Sbjct: 96  LVGPSIETLHAANNN-ISRVSCSRGQG--KKNIYLANNKITMLRDLDEGCRSRVQYLDLK 152

Query: 185 ETAIEELP--SSIERLLRLGHLDLSDCKRLKSLPSSLFKLKSLGVLNLGGCSNLQRLPEC 242
              I+ +           L HL+L     +  +   +     L  L+L     L  +   
Sbjct: 153 LNEIDTVNFAELAASSDTLEHLNLQYN-FIYDVKGQVV-FAKLKTLDLSSN-KLAFMGPE 209

Query: 243 LGQLSSPIILNLAKTNVERIPESIIQLFVLRYLLLSY 279
               +    ++L    +  I +++     L +  L  
Sbjct: 210 FQSAAGVTWISLRNNKLVLIEKALRFSQNLEHFDLRG 246

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 50.8 bits (122), Expect = 2e-07
 Identities = 20/158 (12%), Positives = 44/158 (27%), Gaps = 16/158 (10%)

Query: 129 LNKLVILNLRGSKSLKSLPSGIF-NLEFLTKLDLSGCSKLKRLLEISSG-------NINW 180
                 + L  +K +  L          +  LDL        +  ++          +  
Sbjct: 119 GQGKKNIYLANNK-ITMLRDLDEGCRSRVQYLDLKLN----EIDTVNFAELAASSDTLEH 173

Query: 181 LFLRETAIEELPSSIERLLRLGHLDLSDCKRLKSLPSSLFKLKSLGVLNLGGCSNLQRLP 240
           L L+   I ++   +    +L  LDLS   +L  +         +  ++L     L  + 
Sbjct: 174 LNLQYNFIYDVKGQV-VFAKLKTLDLSSN-KLAFMGPEFQSAAGVTWISLRNN-KLVLIE 230

Query: 241 ECLGQLSSPIILNLAKTNVERIPESIIQLFVLRYLLLS 278
           + L    +    +L                  R   ++
Sbjct: 231 KALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVA 268

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 50.0 bits (120), Expect = 4e-07
 Identities = 34/182 (18%), Positives = 68/182 (37%), Gaps = 23/182 (12%)

Query: 123 PTLMPHLNKLVILNLRGSKSLKSLPSGIF-NLEFLTKLDLSGCSKLKRLLEISSGNIN-- 179
             +  + N+  I  +  S  LK   + +  +   + +LDLSG      L +IS+ ++   
Sbjct: 3   HEIKQNGNRYKIEKVTDSS-LKQALASLRQSAWNVKELDLSGN----PLSQISAADLAPF 57

Query: 180 ----WLFLRETAIEELPSSIERLLRLGHLDLSDCKRLKSLPSSLFKLKSLGVLNLGGCSN 235
                L L    + E    +E L  L  LDL++   ++ L        S+  L+     N
Sbjct: 58  TKLELLNLSSNVLYETL-DLESLSTLRTLDLNNN-YVQELLV----GPSIETLHAANN-N 110

Query: 236 LQRLPECLGQLSSPIILNLAKTNVERIPE-SIIQLFVLRYLLLSYSERIQSVSLPLARGI 294
           + R+     +      + LA   +  + +        ++YL L  +  I +V+       
Sbjct: 111 ISRVS--CSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLN-EIDTVNFAELAAS 167

Query: 295 LE 296
            +
Sbjct: 168 SD 169

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 42.7 bits (101), Expect = 7e-05
 Identities = 26/138 (18%), Positives = 49/138 (35%), Gaps = 12/138 (8%)

Query: 145 SLPSGIFNLEFLTKLDLSGC--SKLKRLLEISSGNINWLFLRETAIEELP-SSIERLLRL 201
           ++     N        ++     +    L  S+ N+  L L    + ++  + +    +L
Sbjct: 1   AIHEIKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKL 60

Query: 202 GHLDLSDCKRLKSLPSSLFKLKSLGVLNLGGCSNLQRLPECLGQLSSPIILNLAKTNVER 261
             L+LS    L      L  L +L  L+L     +Q L        S   L+ A  N+ R
Sbjct: 61  ELLNLSSNV-LYETL-DLESLSTLRTLDLNNN-YVQELL----VGPSIETLHAANNNISR 113

Query: 262 IPESIIQLFVLRYLLLSY 279
           +  S  Q    + + L+ 
Sbjct: 114 VSCSRGQG--KKNIYLAN 129

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 56.0 bits (135), Expect = 5e-09
 Identities = 20/157 (12%), Positives = 49/157 (31%), Gaps = 10/157 (6%)

Query: 127 PHLNKLVILNLRGSKSLKSLPSGIFNLEFLTKLDLSGC--SKLKRLLEISSGNINWLFLR 184
                +  L+   +  +  +            + L+    + L+ L E     + +L L+
Sbjct: 96  LVGPSIETLHAANNN-ISRVSCSRGQ--GKKNIYLANNKITMLRDLDEGCRSRVQYLDLK 152

Query: 185 ETAIEELPSS--IERLLRLGHLDLSDCKRLKSLPSSLFKLKSLGVLNLGGCSNLQRLPEC 242
              I+ +  +        L HL+L     +  +   +     L  L+L     L  +   
Sbjct: 153 LNEIDTVNFAELAASSDTLEHLNLQYN-FIYDVKGQVV-FAKLKTLDLSSN-KLAFMGPE 209

Query: 243 LGQLSSPIILNLAKTNVERIPESIIQLFVLRYLLLSY 279
               +    ++L    +  I +++     L +  L  
Sbjct: 210 FQSAAGVTWISLRNNKLVLIEKALRFSQNLEHFDLRG 246

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 45.2 bits (107), Expect = 2e-05
 Identities = 32/179 (17%), Positives = 62/179 (34%), Gaps = 17/179 (9%)

Query: 123 PTLMPHLNKLVILNLRGSKSLKSLPSGIF-NLEFLTKLDLSGCSKLKRLLEISSGNIN-- 179
             +  + N+  I  +  S  LK   + +  +   + +LDLSG   L ++           
Sbjct: 3   HEIKQNGNRYKIEKVTDSS-LKQALASLRQSAWNVKELDLSGN-PLSQISAADLAPFTKL 60

Query: 180 -WLFLRETAIEELPSSIERLLRLGHLDLSDCKRLKSLPSSLFKLKSLGVLNLGGCSNLQR 238
             L L    + E    +E L  L  LDL++          L    S+  L+     N+ R
Sbjct: 61  ELLNLSSNVLYETL-DLESLSTLRTLDLNNNY-----VQELLVGPSIETLHAANN-NISR 113

Query: 239 LPECLGQLSSPIILNLAKTNVERIPE-SIIQLFVLRYLLLSYSERIQSVSLPLARGILE 296
           +     +      + LA   +  + +        ++YL L  +  I +V+        +
Sbjct: 114 VSC--SRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLN-EIDTVNFAELAASSD 169

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 43.3 bits (102), Expect = 6e-05
 Identities = 21/199 (10%), Positives = 49/199 (24%), Gaps = 10/199 (5%)

Query: 117 IAKTPNPTLMPHLNKLVILNLRGSKSLKSLPSGIFNLEFLTKLDLSGCSK-----LKRLL 171
                         ++  +  +  K L         +  L       C         RL+
Sbjct: 249 FHCGTLRDFFSKNQRVQTVAKQTVKKLTGQNEEECTVPTLGHYGAYCCEDLPAPFADRLI 308

Query: 172 EISSGNINWLFLRETAIEELPSSIERLLRLGHLDLSDCKRLKSLPSSLFK-LKSLGVLNL 230
            +       L  + +  E L    E   R   +D     + +++   +    ++   L  
Sbjct: 309 ALKRKEHALLSGQGSETERLECERENQARQREIDALKE-QYRTVIDQVTLRKQAKITLEQ 367

Query: 231 GG---CSNLQRLPECLGQLSSPIILNLAKTNVERIPESIIQLFVLRYLLLSYSERIQSVS 287
                   +        +L   +   + +  ++   E    L +LR ++  Y E      
Sbjct: 368 KKKALDEQVSNGRRAHAELDGTLQQAVGQIELQHATEEQSPLQLLRAIVKRYEEMYVEQQ 427

Query: 288 LPLARGILEDTQRSPHMDH 306
                 I +          
Sbjct: 428 SVQNNAIRDWDMYQHKETQ 446

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 56.2 bits (136), Expect = 6e-09
 Identities = 42/173 (24%), Positives = 74/173 (42%), Gaps = 27/173 (15%)

Query: 128 HLNKLVILNLRGSKSLKSLPSGIF-NLEFLTKLDLSGCSKLKRLLEISSG------NINW 180
            L  L +L+L  ++  + L    +  LE + ++ LS      + L+++        ++  
Sbjct: 403 WLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYN----KYLQLTRNSFALVPSLQR 458

Query: 181 LFLRE---TAIEELPSSIERLLRLGHLDLSDCKRLKSLPSSLFK-LKSLGVLNLGGCSNL 236
           L LR      ++  PS  + L  L  LDLS+   + ++   + + L+ L +L+L    NL
Sbjct: 459 LMLRRVALKNVDSSPSPFQPLRNLTILDLSNN-NIANINDDMLEGLEKLEILDLQHN-NL 516

Query: 237 QRL---------PECLGQLSSPIILNLAKTNVERIPESIIQ-LFVLRYLLLSY 279
            RL            L  LS   ILNL     + IP  + + LF L+ + L  
Sbjct: 517 ARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKIIDLGL 569

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 54.6 bits (132), Expect = 2e-08
 Identities = 39/173 (22%), Positives = 67/173 (38%), Gaps = 19/173 (10%)

Query: 122 NPTLMPHLNKLVILNLRGSK-SLKSLPSGIF---NLEFLTKLDLSGCSKLKRLLEISSG- 176
              +   L  L  L+L  S  SL++L +  F       L  L+L+      ++ +I S  
Sbjct: 345 KSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKN----KISKIESDA 400

Query: 177 -----NINWLFLRETAIEEL--PSSIERLLRLGHLDLSDCKRLKSLPSSLFKLKSLGVLN 229
                ++  L L    I +         L  +  + LS  K L+   +S   + SL  L 
Sbjct: 401 FSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLM 460

Query: 230 LGGC--SNLQRLPECLGQLSSPIILNLAKTNVERIPESIIQ-LFVLRYLLLSY 279
           L      N+   P     L +  IL+L+  N+  I + +++ L  L  L L +
Sbjct: 461 LRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQH 513

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 51.5 bits (124), Expect = 2e-07
 Identities = 43/191 (22%), Positives = 68/191 (35%), Gaps = 23/191 (12%)

Query: 107 QIINATCNKLIAKTPNPTLMPHLNKLVILNLRGSK--SLKSLPSGIFNLEFLTKLDLSGC 164
             I  + NK             +  L  L LR     ++ S PS    L  LT LDLS  
Sbjct: 433 FEIYLSYNKY--LQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNN 490

Query: 165 ----------SKLKRL--LEISSGNINWLFLRETAIEELPSSIERLLRLGHLDLSDCKRL 212
                       L++L  L++   N+  L+ +          ++ L  L  L+L      
Sbjct: 491 NIANINDDMLEGLEKLEILDLQHNNLARLW-KHANPGGPIYFLKGLSHLHILNLESN-GF 548

Query: 213 KSLPSSLFK-LKSLGVLNLGGCSNLQRL-PECLGQLSSPIILNLAKTNVERIPESIIQLF 270
             +P  +FK L  L +++LG   NL  L         S   LNL K  +  + + +    
Sbjct: 549 DEIPVEVFKDLFELKIIDLGLN-NLNTLPASVFNNQVSLKSLNLQKNLITSVEKKVFGPA 607

Query: 271 V--LRYLLLSY 279
              L  L + +
Sbjct: 608 FRNLTELDMRF 618

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 48.8 bits (117), Expect = 1e-06
 Identities = 39/178 (21%), Positives = 63/178 (35%), Gaps = 15/178 (8%)

Query: 114 NKLIAKTPNPTLMPHLNKLVILNLRGSKSLKSLPSGIF-NLEFLTKLDLSGC--SKLKRL 170
           N+L     +         L  L+L  +  ++ + +  F   + L  LDLS    S  K  
Sbjct: 83  NEL--SQLSDKTFAFCTNLTELHLMSNS-IQKIKNNPFVKQKNLITLDLSHNGLSSTKLG 139

Query: 171 LEISSGNINWLFLRETAIEELPS---SIERLLRLGHLDLSDCKRLKSLPSSLFKLKSLGV 227
            ++   N+  L L    I+ L S    I     L  L+LS  +  +  P     +  L  
Sbjct: 140 TQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFG 199

Query: 228 LNLGGCSNLQRLPECLG---QLSSPIILNLAKTNVERIPESII---QLFVLRYLLLSY 279
           L L        L E L      +S   L+L+ + +     +     +   L  L LSY
Sbjct: 200 LFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSY 257

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 47.3 bits (113), Expect = 4e-06
 Identities = 33/163 (20%), Positives = 60/163 (36%), Gaps = 18/163 (11%)

Query: 129 LNKLVILNLRGSKSLKSLPSGIF-NLEFLTKLDLSGCSKLKRLLEISSG------NINWL 181
              + +LNL  ++ L+ LP+  F     LT LD+   +    + ++          +  L
Sbjct: 24  PTNITVLNLTHNQ-LRRLPAANFTRYSQLTSLDVGFNT----ISKLEPELCQKLPMLKVL 78

Query: 182 FLRETAIEELP-SSIERLLRLGHLDLSDCKRLKSLPSSLFKLKSLGVLNLGGCSNLQRL- 239
            L+   + +L   +      L  L L      K   +   K K+L  L+L     L    
Sbjct: 79  NLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHN-GLSSTK 137

Query: 240 PECLGQLSSPIILNLAKTNVERIPESIIQLFV---LRYLLLSY 279
                QL +   L L+   ++ +    + +F    L+ L LS 
Sbjct: 138 LGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSS 180

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 44.2 bits (105), Expect = 3e-05
 Identities = 37/190 (19%), Positives = 59/190 (31%), Gaps = 21/190 (11%)

Query: 119 KTPNPTLMPHLNKLVILNLRGSKSLKSLPSGIF---NLEFLTKLDLSGCSKLKRLLEISS 175
           K  +P     + +L  L L   +   SL   +        +  L LS    L      + 
Sbjct: 184 KEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQ-LSTTSNTTF 242

Query: 176 GNINW-----LFLRETAIEEL-PSSIERLLRLGHLDLSDCKRLKSLPSSLFKLKSLGVLN 229
             + W     L L    +  +   S   L +L +  L           SL  L ++  LN
Sbjct: 243 LGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLN 302

Query: 230 LGGCSNLQRL---------PECLGQLSSPIILNLAKTNVERIPESIIQ-LFVLRYLLLSY 279
           L      Q +               L     LN+   ++  I  ++   L  L+YL LS 
Sbjct: 303 LKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSN 362

Query: 280 SERIQSVSLP 289
           S      +L 
Sbjct: 363 S-FTSLRTLT 371

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 56.2 bits (136), Expect = 6e-09
 Identities = 52/241 (21%), Positives = 80/241 (33%), Gaps = 41/241 (17%)

Query: 75  SNLSAEKLVFLKVPYSDIEQLWNG--EKHYSNLNQIINATCNKLIAKTPNPTLMPHLNKL 132
            N + + L        D E +     E       + IN   +       +       + L
Sbjct: 223 KNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYF--FNISSNTFHCFSGL 280

Query: 133 VILNLRGSKSLKSLPSGIFNLEFLTKLDLSGC----------SKLKRLLEIS-SGNINWL 181
             L+L  +  L  LPSG+  L  L KL LS            S    L  +S  GN   L
Sbjct: 281 QELDLTATH-LSELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRL 339

Query: 182 FLRETAIEELPS-------------------SIERLLRLGHLDLSDCKRLKSLPSSLFK- 221
            L    +E L +                    +  L  L  L+LS  +   SL +  FK 
Sbjct: 340 ELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNE-PLSLKTEAFKE 398

Query: 222 LKSLGVLNLGGCSNLQRLPE--CLGQLSSPIILNLAKTNVERIPESIIQ-LFVLRYLLLS 278
              L +L+L     L+          L    +LNL+ + ++   E +   L  L++L L 
Sbjct: 399 CPQLELLDLAFT-RLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQ 457

Query: 279 Y 279
            
Sbjct: 458 G 458

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 52.7 bits (127), Expect = 7e-08
 Identities = 31/182 (17%), Positives = 58/182 (31%), Gaps = 19/182 (10%)

Query: 122 NPTLMPHLNKLVILNLRGSKSLKSLPSGIF-NLEFLTKLDLSGCSKLKRLLEISSG---- 176
             T    L  L  L+L   + +  +    F +   L  L L+       L+ ++      
Sbjct: 49  QNTTFSRLINLTFLDLTRCQ-IYWIHEDTFQSQHRLDTLVLTAN----PLIFMAETALSG 103

Query: 177 --NINWLFLRETAIEEL-PSSIERLLRLGHLDLSDCKRLKSLPSSLF-KLKSLGVLNLGG 232
              +  LF  +T I  +    +     L  L L     + S+        + L VL+   
Sbjct: 104 PKALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSN-HISSIKLPKGFPTEKLKVLDFQN 162

Query: 233 CSNLQRL-PECLGQLSS--PIILNLAKTNVERIPESIIQLFVLRYLLLSYSERIQSVSLP 289
              +  L  E +  L     + LNL   ++  I        V + L    ++ +  +   
Sbjct: 163 N-AIHYLSKEDMSSLQQATNLSLNLNGNDIAGIEPGAFDSAVFQSLNFGGTQNLLVIFKG 221

Query: 290 LA 291
           L 
Sbjct: 222 LK 223

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 51.2 bits (123), Expect = 2e-07
 Identities = 58/308 (18%), Positives = 104/308 (33%), Gaps = 45/308 (14%)

Query: 10  LDMSTVKEIRLNLSTFTKMPKLRFLKFYSSSFNGENKCKVSYLQDPRFAEVKYFHWHGYP 69
              +    +       + +  L    F        +      L +     V+  +   + 
Sbjct: 209 FGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMS---VESINLQKHY 265

Query: 70  LKSLPSNLSA--EKLVFLKVPYSDIEQLWNGEKHYSNLNQIINATCNKLIAKTPNPTLMP 127
             ++ SN       L  L +  + + +L +G    S L + +  + NK   +        
Sbjct: 266 FFNISSNTFHCFSGLQELDLTATHLSELPSGLVGLSTL-KKLVLSANKF--ENLCQISAS 322

Query: 128 HLNKLVILNLRGSKSLKSLPSGIF-NLEFLTKLDLS---------------GCSKLKRL- 170
           +   L  L+++G+     L +G   NLE L +LDLS                 S L+ L 
Sbjct: 323 NFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLN 382

Query: 171 ------LEISSG------NINWLFLRETAIEEL--PSSIERLLRLGHLDLSDCKRLKSLP 216
                 L + +        +  L L  T ++     S  + L  L  L+LS    L    
Sbjct: 383 LSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHS-LLDISS 441

Query: 217 SSLFK-LKSLGVLNLGGCS---NLQRLPECLGQLSSPIILNLAKTNVERIPESIIQ-LFV 271
             LF  L +L  LNL G        +    L  L    IL L+  ++  I +     L +
Sbjct: 442 EQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKM 501

Query: 272 LRYLLLSY 279
           + ++ LS+
Sbjct: 502 MNHVDLSH 509

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 43.1 bits (102), Expect = 8e-05
 Identities = 26/137 (18%), Positives = 45/137 (32%), Gaps = 12/137 (8%)

Query: 159 LDLSGCSKLKRLLEISSG---NINWLFLRETAIEEL-PSSIERLLRLGHLDLSDCKRLKS 214
            +         L EI      +   L      +  +  ++  RL+ L  LDL+ C ++  
Sbjct: 17  YNCENL----GLNEIPGTLPNSTECLEFSFNVLPTIQNTTFSRLINLTFLDLTRC-QIYW 71

Query: 215 LPSSLFK-LKSLGVLNLGGCSNLQRLPECLGQLSSPIILNLAKTNVERIPESIIQ-LFVL 272
           +    F+    L  L L     +      L    +   L   +T +  I    +     L
Sbjct: 72  IHEDTFQSQHRLDTLVLTANPLIFMAETALSGPKALKHLFFIQTGISSIDFIPLHNQKTL 131

Query: 273 RYLLLSYSERIQSVSLP 289
             L L  +  I S+ LP
Sbjct: 132 ESLYLGSN-HISSIKLP 147

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 42.7 bits (101), Expect = 1e-04
 Identities = 28/136 (20%), Positives = 47/136 (34%), Gaps = 17/136 (12%)

Query: 107 QIINATCNKLIAKTPNPTLMPHLNKLVILNLRG---SKSLKSLPSGIFNLEFLTKLDLSG 163
           +++N + + L     +  L   L  L  LNL+G    K      + +  L  L  L LS 
Sbjct: 428 KVLNLSHSLL--DISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSF 485

Query: 164 CSKLKRLLEISSG------NINWLFLRETAIEELPSSIERLLRLGHLDLSDCKRLKSLPS 217
           C     L  I          +N + L    +          L+  +L+L+    +  +  
Sbjct: 486 C----DLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGIYLNLAS-NHISIILP 540

Query: 218 SLFK-LKSLGVLNLGG 232
           SL   L     +NL  
Sbjct: 541 SLLPILSQQRTINLRQ 556

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 53.1 bits (128), Expect = 2e-08
 Identities = 24/160 (15%), Positives = 49/160 (30%), Gaps = 34/160 (21%)

Query: 128 HLNKLVILNLRGSKSLKSLPSGIF-NLEFLTKLDLSGC-------------SKLKRLLEI 173
           +L+K+  + +R +++L  +       L  L  L +                + +  +LEI
Sbjct: 78  NLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLGIFNTGLKMFPDLTKVYSTDIFFILEI 137

Query: 174 SSGNI----------------NWLFLRETAIEELPSSIERLLRLGHLDLSDCKRLKSLPS 217
           +                      L L       +        +L  + L+  K L  +  
Sbjct: 138 TDNPYMTSIPVNAFQGLCNETLTLKLYNNGFTSVQGYAFNGTKLDAVYLNKNKYLTVIDK 197

Query: 218 SLFK--LKSLGVLNLGGCSNLQRLP-ECLGQLSSPIILNL 254
             F        +L++    ++  LP + L  L   I  N 
Sbjct: 198 DAFGGVYSGPSLLDVSQT-SVTALPSKGLEHLKELIARNT 236

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 53.1 bits (128), Expect = 2e-08
 Identities = 24/169 (14%), Positives = 55/169 (32%), Gaps = 34/169 (20%)

Query: 128 HLNKLVILNLRGSKSLKSLPSGIF-NLEFLTKLDLSGCSKLKRLLEISSG------NINW 180
           +L  +  + +    +L+ L S  F NL  +T +++     L     I          + +
Sbjct: 53  NLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLT---YIDPDALKELPLLKF 109

Query: 181 LFLRETAIEELP--SSIERLLRLGHLDLSDCKRLKSLPSSLFKLKSLGVLNLGGCSNLQR 238
           L +  T ++  P  + +        L+++D   + S+P + F+          G  N   
Sbjct: 110 LGIFNTGLKMFPDLTKVYSTDIFFILEITDNPYMTSIPVNAFQ----------GLCNETL 159

Query: 239 LPECLGQLSSPIILNLAKTNVERIPESIIQLFVLRYLLLSYSERIQSVS 287
                        L L       +         L  + L+ ++ +  + 
Sbjct: 160 ------------TLKLYNNGFTSVQGYAFNGTKLDAVYLNKNKYLTVID 196

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 46.9 bits (112), Expect = 2e-06
 Identities = 22/116 (18%), Positives = 47/116 (40%), Gaps = 5/116 (4%)

Query: 177 NINWLFLRETAIEELPS-SIERLLRLGHLDLSDCKRLKSLPSSLFK-LKSLGVLNLGGCS 234
           +   L L ET +  +PS +   L  +  + +S    L+ L S  F  L  +  + +    
Sbjct: 32  STQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTR 91

Query: 235 NLQRLP-ECLGQLSSPIILNLAKTNVERIPE--SIIQLFVLRYLLLSYSERIQSVS 287
           NL  +  + L +L     L +  T ++  P+   +    +   L ++ +  + S+ 
Sbjct: 92  NLTYIDPDALKELPLLKFLGIFNTGLKMFPDLTKVYSTDIFFILEITDNPYMTSIP 147

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 53.5 bits (129), Expect = 2e-08
 Identities = 41/188 (21%), Positives = 72/188 (38%), Gaps = 34/188 (18%)

Query: 132 LVILNLRGSKSLKSLPSGIF-NLEFLTKLDLSGCS----KLKRLLEISSGNINWLFLRET 186
              L L  +K L+SLP G+F  L  LTKL LS             +  + ++ +L L   
Sbjct: 30  ATRLELESNK-LQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFN 88

Query: 187 AIEELPSSIERLLRLGHLDLSDCK------------------------RLKSLPSSLFK- 221
            +  + S+   L +L HLD                               +   + +F  
Sbjct: 89  GVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNG 148

Query: 222 LKSLGVLNLGGCSNLQRLPE-CLGQLSSPIILNLAKTNVERIPESIIQ-LFVLRYLLLSY 279
           L SL VL + G S  +        +L +   L+L++  +E++  +    L  L+ L +S+
Sbjct: 149 LSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSH 208

Query: 280 SERIQSVS 287
           +    S+ 
Sbjct: 209 N-NFFSLD 215

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 48.1 bits (115), Expect = 1e-06
 Identities = 28/115 (24%), Positives = 45/115 (39%), Gaps = 15/115 (13%)

Query: 128 HLNKLVILNLRGSKSLKSLPSGIF-NLEFLTKLDLSGCSKLKRLLEISSG------NINW 180
            L+ L +L + G+   ++    IF  L  LT LDLS C    +L ++S        ++  
Sbjct: 148 GLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQC----QLEQLSPTAFNSLSSLQV 203

Query: 181 LFLRETAIEELPSSI-ERLLRLGHLDLSDCKRLKSLPSSLFK--LKSLGVLNLGG 232
           L +       L +   + L  L  LD S    + +      +    SL  LNL  
Sbjct: 204 LNMSHNNFFSLDTFPYKCLNSLQVLDYSLN-HIMTSKKQELQHFPSSLAFLNLTQ 257

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 48.1 bits (115), Expect = 1e-06
 Identities = 35/160 (21%), Positives = 63/160 (39%), Gaps = 20/160 (12%)

Query: 140 SKSLKSLPSGIFNLEFLTKLDLSGCSKLKRLLEISSG------NINWLFLRE---TAIEE 190
           SK L S+P+GI      T+L+L       +L  +  G       +  L L     +    
Sbjct: 16  SKGLTSVPTGIP--SSATRLELESN----KLQSLPHGVFDKLTQLTKLSLSSNGLSFKGC 69

Query: 191 LPSSIERLLRLGHLDLSDCKRLKSLPSSLFKLKSLGVLNLGGCSNLQRLPEC--LGQLSS 248
              S      L +LDLS    + ++ S+   L+ L  L+     NL+++ E      L +
Sbjct: 70  CSQSDFGTTSLKYLDLSFNG-VITMSSNFLGLEQLEHLDFQHS-NLKQMSEFSVFLSLRN 127

Query: 249 PIILNLAKTNVERIPESIIQ-LFVLRYLLLSYSERIQSVS 287
            I L+++ T+       I   L  L  L ++ +   ++  
Sbjct: 128 LIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFL 167

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 53.6 bits (128), Expect = 3e-08
 Identities = 23/114 (20%), Positives = 35/114 (30%), Gaps = 23/114 (20%)

Query: 120 TPNPTLMPHLNKLVILNLRGSKSLKSLPSGIF-NLEFLTKLDLSGCSKLKRLLEISSGNI 178
             +   +P    L  L +   + L+ L       L  L  L +        L  ++    
Sbjct: 21  LDSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKS----GLRFVA---- 72

Query: 179 NWLFLRETAIEELPSSIERLLRLGHLDLSDCKRLKSLPSSLFKLKSLGVLNLGG 232
                        P +     RL  L+LS    L+SL     +  SL  L L G
Sbjct: 73  -------------PDAFHFTPRLSRLNLSFN-ALESLSWKTVQGLSLQELVLSG 112

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 53.4 bits (129), Expect = 5e-08
 Identities = 36/158 (22%), Positives = 60/158 (37%), Gaps = 7/158 (4%)

Query: 128 HLNKLVILNLRGSKSLKSLPSGIFNLEFLTKLDLSGCSKLKRLLEISSGNINWLFLRETA 187
             + L  L++ G+K        I     L  L++S    +  +  +   ++ +L L E  
Sbjct: 221 DCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPPLPLKSLQYLSLAENK 280

Query: 188 IE-ELPSSIERLLR-LGHLDLSDCKRLKSLPSSLFKLKSLGVLNLGGCSNLQ-RLP-ECL 243
              E+P  +      L  LDLS      ++P        L  L L    N    LP + L
Sbjct: 281 FTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSN-NFSGELPMDTL 339

Query: 244 GQLSSPIILNLAKTNVE-RIPESIIQLFV-LRYLLLSY 279
            ++    +L+L+       +PES+  L   L  L LS 
Sbjct: 340 LKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSS 377

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 49.9 bits (120), Expect = 6e-07
 Identities = 35/136 (25%), Positives = 52/136 (38%), Gaps = 24/136 (17%)

Query: 145 SLPSGIFNLEFLTKLDLSGCSKLKRLLEISSGNINWLFLRETAIEELPSSIERLLRLGHL 204
            +P  + N   L  L LS    L       SG I             PSS+  L +L  L
Sbjct: 409 KIPPTLSNCSELVSLHLSFNY-L-------SGTI-------------PSSLGSLSKLRDL 447

Query: 205 DLSDCKRLKSLPSSLFKLKSLGVLNLGGCSNLQ-RLPECLGQLSSPIILNLAKTNVE-RI 262
            L        +P  L  +K+L  L L    +L   +P  L   ++   ++L+   +   I
Sbjct: 448 KLWLNMLEGEIPQELMYVKTLETLILDFN-DLTGEIPSGLSNCTNLNWISLSNNRLTGEI 506

Query: 263 PESIIQLFVLRYLLLS 278
           P+ I +L  L  L LS
Sbjct: 507 PKWIGRLENLAILKLS 522

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 49.1 bits (118), Expect = 1e-06
 Identities = 25/161 (15%), Positives = 50/161 (31%), Gaps = 18/161 (11%)

Query: 129 LNKLVILNLRGSKSLKSLPSGIFNLEFLTKLDLSGCSKLKRLLEISSGNI------NWLF 182
           L  L IL L  +    ++P+ + +   L  LDL+  +         +G I          
Sbjct: 513 LENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNT-NLF-------NGTIPAAMFKQSGK 564

Query: 183 LRETAIE-ELPSSIERLLRLGHLDLSD--CKRLKSLPSSLFKLKSLGVLNLGGCSNLQRL 239
           +    I  +    I+          +    +        L +L +    N+         
Sbjct: 565 IAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHT 624

Query: 240 PECLGQLSSPIILNLAKTNVE-RIPESIIQLFVLRYLLLSY 279
                   S + L+++   +   IP+ I  +  L  L L +
Sbjct: 625 SPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGH 665

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 48.4 bits (116), Expect = 2e-06
 Identities = 31/164 (18%), Positives = 59/164 (35%), Gaps = 10/164 (6%)

Query: 121 PNPTLMPHLNKLVILNLRGSKSLKSLPSGIFNLEFLTKLDLSGCSKLKRLLEISS-GNIN 179
               L     +L  L + G+K    +   +     L  LD+S  +    +  +     + 
Sbjct: 169 VGWVLSDGCGELKHLAISGNKISGDVD--VSRCVNLEFLDVSSNNFSTGIPFLGDCSALQ 226

Query: 180 WLFLRETAIE-ELPSSIERLLRLGHLDLSDCKRLKSLPSSLFKLKSLGVLNLGGCSNLQ- 237
            L +    +  +   +I     L  L++S  + +  +P     LKSL  L+L        
Sbjct: 227 HLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPPL--PLKSLQYLSLAEN-KFTG 283

Query: 238 RLPECL-GQLSSPIILNLAKTNVE-RIPESIIQLFVLRYLLLSY 279
            +P+ L G   +   L+L+  +    +P       +L  L LS 
Sbjct: 284 EIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSS 327

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 47.2 bits (113), Expect = 5e-06
 Identities = 26/161 (16%), Positives = 53/161 (32%), Gaps = 11/161 (6%)

Query: 128 HLNKLVILNLRGSKSLKSLPSGIFNLEFLTKLDLSGCSKLKRLLEISS-GNINWLFLRET 186
            +  + + +   +    ++ S + +L  L  L LS       +       ++  L L   
Sbjct: 51  KVTSIDLSSKPLNVGFSAVSSSLLSLTGLESLFLSNSHINGSVSGFKCSASLTSLDLSRN 110

Query: 187 AIE-ELPS--SIERLLRLGHLDLSDCKRLKSLP-SSLFKLKSLGVLNLGGCS---NLQRL 239
           ++   + +  S+     L  L++S          S   KL SL VL+L   S        
Sbjct: 111 SLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSISGANVVG 170

Query: 240 PECLGQLSSPIILNLAKTNVE-RIPESIIQLFVLRYLLLSY 279
                       L ++   +   +  S  +   L +L +S 
Sbjct: 171 WVLSDGCGELKHLAISGNKISGDVDVS--RCVNLEFLDVSS 209

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 42.6 bits (101), Expect = 1e-04
 Identities = 33/164 (20%), Positives = 58/164 (35%), Gaps = 30/164 (18%)

Query: 107 QIINATCNKLIAKTPNPTLMPHLNKLVILNLRGSKSLKSLPSGIFNLEFLTKLDLSGCSK 166
           +  +   N L  +      +  L+     N+              N   +  LD+S  + 
Sbjct: 585 KECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMS-YNM 643

Query: 167 LKRLLEISSGNINWLFLRETAIEELPSSIERLLRLGHLDLSDCKRLK-SLPSSLFKLKSL 225
           L       SG I             P  I  +  L  L+L     +  S+P  +  L+ L
Sbjct: 644 L-------SGYI-------------PKEIGSMPYLFILNLG-HNDISGSIPDEVGDLRGL 682

Query: 226 GVLNLGGCS--NLQ-RLPECLGQLSSPIILNLAKTNVE-RIPES 265
            +L+L   S   L  R+P+ +  L+    ++L+  N+   IPE 
Sbjct: 683 NILDL---SSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPEM 723

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 40.3 bits (95), Expect = 7e-04
 Identities = 29/177 (16%), Positives = 60/177 (33%), Gaps = 26/177 (14%)

Query: 106 NQIINATCNKLIAKTPNPTLMPHLNKLVILNLRGSKSLKSLPSGIFNLEFLTKLDLSGCS 165
            Q      N +  K         + K         +        +  L      +++   
Sbjct: 560 KQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRV 619

Query: 166 KLKRLLEISSGNINWLFLRETAIEELPSSIERLLRLGHLDLSDCKRLK-SLPSSLFKLKS 224
                     G+                + +    +  LD+S    L   +P  +  +  
Sbjct: 620 Y--------GGHT-------------SPTFDNNGSMMFLDMS-YNMLSGYIPKEIGSMPY 657

Query: 225 LGVLNLGGCSNLQ-RLPECLGQLSSPIILNLAKTNVE-RIPESIIQLFVLRYLLLSY 279
           L +LNL G +++   +P+ +G L    IL+L+   ++ RIP+++  L +L  + LS 
Sbjct: 658 LFILNL-GHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSN 713

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 53.1 bits (128), Expect = 6e-08
 Identities = 36/159 (22%), Positives = 65/159 (40%), Gaps = 11/159 (6%)

Query: 127 PHLNKLVILNLRGSKSLKSLPSGIFNLEFLTKLDLSGCSKLKRLLEISSGNINWLFLRET 186
           P   K   L++   + LK  P+   +L FL  L L+         +++  ++++L L   
Sbjct: 304 PKHFKWQSLSIIRCQ-LKQFPT--LDLPFLKSLTLTMNKGSISFKKVALPSLSYLDLSRN 360

Query: 187 AIEELPS---SIERLLRLGHLDLSDCKRLKSLPSSLFKLKSLGVLNLGGCSNLQRLPEC- 242
           A+        S      L HLDLS       + ++   L+ L  L+    S L+R+ E  
Sbjct: 361 ALSFSGCCSYSDLGTNSLRHLDLSFNG-AIIMSANFMGLEELQHLDFQH-STLKRVTEFS 418

Query: 243 -LGQLSSPIILNLAKTNVERIPESIIQ-LFVLRYLLLSY 279
               L   + L+++ TN +   + I   L  L  L ++ 
Sbjct: 419 AFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAG 457

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 50.8 bits (122), Expect = 3e-07
 Identities = 37/234 (15%), Positives = 83/234 (35%), Gaps = 37/234 (15%)

Query: 70  LKSLPSNLSAEKLVFLKVPYSDIEQLWNGE-KHYSNLNQIINATCNKLIAKTPNPTLMPH 128
           L  +P ++       + + ++ ++ L +    ++S L Q ++ +  + I    +      
Sbjct: 23  LSKVPDDIP-SSTKNIDLSFNPLKILKSYSFSNFSEL-QWLDLSRCE-IETIEDKAWH-G 78

Query: 129 LNKLVILNLRGSKSLKSLPSGIF-NLEFLTKLDLSGCSKLKRLLEISSGNINWLFLRETA 187
           L+ L  L L G+  ++S   G F  L  L  L                            
Sbjct: 79  LHHLSNLILTGNP-IQSFSPGSFSGLTSLENLVAVETK---------------------- 115

Query: 188 IEELPS-SIERLLRLGHLDLSDCK-RLKSLPSSLFKLKSLGVLNLGGCSNLQRLPEC--- 242
           +  L S  I +L+ L  L+++        LP+    L +L  ++L     +Q +      
Sbjct: 116 LASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYN-YIQTITVNDLQ 174

Query: 243 -LGQLSSPII-LNLAKTNVERIPESIIQLFVLRYLLLSYSERIQSVSLPLARGI 294
            L +     + L+++   ++ I +   Q   L  L L  +    ++     + +
Sbjct: 175 FLRENPQVNLSLDMSLNPIDFIQDQAFQGIKLHELTLRGNFNSSNIMKTCLQNL 228

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 45.8 bits (109), Expect = 1e-05
 Identities = 36/166 (21%), Positives = 58/166 (34%), Gaps = 27/166 (16%)

Query: 117 IAKTPNPTLMPHLNKLVILNLRGSKSLKSLPSGIF-NLEFLTKLDLSGCSKLKRLLEISS 175
           + +    +    L KL+ L++  +   K    GIF  L  L  L ++G S          
Sbjct: 411 LKRVTEFSAFLSLEKLLYLDISYTN-TKIDFDGIFLGLTSLNTLKMAGNSFKDNT----- 464

Query: 176 GNINWLFLRETAIEELPSSIERLLRLGHLDLSDCKRLKSLPSSLFK-LKSLGVLNLGGCS 234
                          L +       L  LDLS C+ L+ +   +F  L  L +LN+    
Sbjct: 465 ---------------LSNVFANTTNLTFLDLSKCQ-LEQISWGVFDTLHRLQLLNMSHN- 507

Query: 235 NLQRLP-ECLGQLSSPIILNLAKTNVERIPESIIQLFV-LRYLLLS 278
           NL  L      QL S   L+ +   +E     +      L +  L+
Sbjct: 508 NLLFLDSSHYNQLYSLSTLDCSFNRIETSKGILQHFPKSLAFFNLT 553

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 43.1 bits (102), Expect = 9e-05
 Identities = 29/136 (21%), Positives = 51/136 (37%), Gaps = 6/136 (4%)

Query: 157 TKLDLSGCSKLKRLLEISSGNINWLFLRETAIEELP-SSIERLLRLGHLDLSDCKRLKSL 215
                    KL ++ +    +   + L    ++ L   S      L  LDLS C+ ++++
Sbjct: 14  ITYQCMD-QKLSKVPDDIPSSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCE-IETI 71

Query: 216 PSSLFK-LKSLGVLNLGGCSNLQRLPECLGQLSSPIILNLAKTNVERIPESIIQ-LFVLR 273
               +  L  L  L L G       P     L+S   L   +T +  +    I  L  L+
Sbjct: 72  EDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLK 131

Query: 274 YLLLSYSERIQSVSLP 289
            L ++++  I S  LP
Sbjct: 132 KLNVAHN-FIHSCKLP 146

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 40.8 bits (96), Expect = 4e-04
 Identities = 24/162 (14%), Positives = 57/162 (35%), Gaps = 17/162 (10%)

Query: 130 NKLVILNLRGSKSLKSLPSGIFNLEFLTKLDLSGCSKLKRLLEISSGNINWL-------- 181
              + L++  +  +  +    F    L +L L G      +++    N+  L        
Sbjct: 181 QVNLSLDMSLNP-IDFIQDQAFQGIKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILG 239

Query: 182 -FLRETAIEELPSSI---ERLLRLGHLDLSDCKRLKSLPSSLFKLKSLGVLNLGGCSNLQ 237
            F  E  +E    SI      + +    L+              L ++  ++L G  +++
Sbjct: 240 EFKDERNLEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVKFHCLANVSAMSLAGV-SIK 298

Query: 238 RLPECLGQLSSPIILNLAKTNVERIPESIIQLFVLRYLLLSY 279
            L + + +      L++ +  +++ P     L  L+ L L+ 
Sbjct: 299 YLED-VPKHFKWQSLSIIRCQLKQFPTL--DLPFLKSLTLTM 337

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 40.4 bits (95), Expect = 6e-04
 Identities = 28/174 (16%), Positives = 52/174 (29%), Gaps = 17/174 (9%)

Query: 123 PTLMPHLNKLVILNLRGSK-SLKSLPSGIFNLEFLTKLDLSG------CSKLKRLLEISS 175
              +  L  L  LN+  +      LP+   NL  L  +DLS            + L  + 
Sbjct: 121 SFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENP 180

Query: 176 GNINWLFLRETAIEELPSSIERLLRLGHLDLSDCKRLKSLPSSLFK-LKSLGVLNL---- 230
                L +    I+ +     + ++L  L L       ++  +  + L  L V  L    
Sbjct: 181 QVNLSLDMSLNPIDFIQDQAFQGIKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGE 240

Query: 231 -GGCSNLQRLP----ECLGQLSSPIILNLAKTNVERIPESIIQLFVLRYLLLSY 279
                NL+       E L  ++          +          L  +  + L+ 
Sbjct: 241 FKDERNLEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVKFHCLANVSAMSLAG 294

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 53.0 bits (127), Expect = 6e-08
 Identities = 25/152 (16%), Positives = 56/152 (36%), Gaps = 10/152 (6%)

Query: 129 LNKLVILNLRGSKSLKSLPSGIFNLEFLTKLDLSGCSKLKRLLEISSGNINWLFLRETAI 188
           +  L   N+  +  L +L         + +LD S    +  +    +  +  L L+   +
Sbjct: 191 IPSLFHANVSYNL-LSTLA----IPIAVEELDASHN-SINVVRGPVNVELTILKLQHNNL 244

Query: 189 EELPSSIERLLRLGHLDLSDCKRLKSLPSSLFK-LKSLGVLNLGGCSNLQRLPECLGQLS 247
            +    +     L  +DLS    L+ +    F  ++ L  L +   + L  L      + 
Sbjct: 245 TDTAW-LLNYPGLVEVDLSYN-ELEKIMYHPFVKMQRLERLYISN-NRLVALNLYGQPIP 301

Query: 248 SPIILNLAKTNVERIPESIIQLFVLRYLLLSY 279
           +  +L+L+  ++  +  +  Q   L  L L +
Sbjct: 302 TLKVLDLSHNHLLHVERNQPQFDRLENLYLDH 333

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 49.2 bits (117), Expect = 1e-06
 Identities = 28/161 (17%), Positives = 58/161 (36%), Gaps = 16/161 (9%)

Query: 124 TLMPHLNKLVILNLRGSKSLKSLPSGIFNLEFLTKLDLSGCSKLKRLLEISS----GNIN 179
           + +     +  L+   +  +  +   +     LT L L        L + +       + 
Sbjct: 205 STLAIPIAVEELDASHNS-INVVRGPVN--VELTILKLQHN----NLTDTAWLLNYPGLV 257

Query: 180 WLFLRETAIEELPSSI-ERLLRLGHLDLSDCKRLKSLPSSLFKLKSLGVLNLGGCSNLQR 238
            + L    +E++      ++ RL  L +S+  RL +L      + +L VL+L    +L  
Sbjct: 258 EVDLSYNELEKIMYHPFVKMQRLERLYISNN-RLVALNLYGQPIPTLKVLDLSHN-HLLH 315

Query: 239 LPECLGQLSSPIILNLAKTNVERIPESIIQLFVLRYLLLSY 279
           +     Q      L L   ++  +  S      L+ L LS+
Sbjct: 316 VERNQPQFDRLENLYLDHNSIVTLKLST--HHTLKNLTLSH 354

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 45.7 bits (108), Expect = 1e-05
 Identities = 31/166 (18%), Positives = 56/166 (33%), Gaps = 8/166 (4%)

Query: 120 TPNPTLMPHLNKLVILNLRGSKSLKSLPSGIFNLEFLTKLDLSGC--SKLKRLLEISSGN 177
               + + +      +++               L     +        KL   L  S   
Sbjct: 17  KCIDSNLQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMRKLPAALLDSFRQ 76

Query: 178 INWLFLRETAIEELPSSI-ERLLRLGHLDLSDCKRLKSLPSSLFK-LKSLGVLNLGGCSN 235
           +  L L +  IEE+ +        +  L +     ++ LP  +F+ +  L VL L    +
Sbjct: 77  VELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFN-AIRYLPPHVFQNVPLLTVLVLERN-D 134

Query: 236 LQRLP-ECLGQLSSPIILNLAKTNVERIPESIIQ-LFVLRYLLLSY 279
           L  LP            L+++  N+ERI +   Q    L+ L LS 
Sbjct: 135 LSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSS 180

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 52.4 bits (126), Expect = 8e-08
 Identities = 25/152 (16%), Positives = 56/152 (36%), Gaps = 10/152 (6%)

Query: 129 LNKLVILNLRGSKSLKSLPSGIFNLEFLTKLDLSGCSKLKRLLEISSGNINWLFLRETAI 188
           +  L   N+  +  L +L         + +LD S    +  +    +  +  L L+   +
Sbjct: 185 IPSLFHANVSYNL-LSTLA----IPIAVEELDASHN-SINVVRGPVNVELTILKLQHNNL 238

Query: 189 EELPSSIERLLRLGHLDLSDCKRLKSLPSSLFK-LKSLGVLNLGGCSNLQRLPECLGQLS 247
            +    +     L  +DLS    L+ +    F  ++ L  L +   + L  L      + 
Sbjct: 239 TDTAW-LLNYPGLVEVDLSYN-ELEKIMYHPFVKMQRLERLYISN-NRLVALNLYGQPIP 295

Query: 248 SPIILNLAKTNVERIPESIIQLFVLRYLLLSY 279
           +  +L+L+  ++  +  +  Q   L  L L +
Sbjct: 296 TLKVLDLSHNHLLHVERNQPQFDRLENLYLDH 327

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 50.4 bits (121), Expect = 3e-07
 Identities = 28/161 (17%), Positives = 58/161 (36%), Gaps = 16/161 (9%)

Query: 124 TLMPHLNKLVILNLRGSKSLKSLPSGIFNLEFLTKLDLSGCSKLKRLLEISS----GNIN 179
           + +     +  L+   +  +  +   +     LT L L        L + +       + 
Sbjct: 199 STLAIPIAVEELDASHNS-INVVRGPVNV--ELTILKLQHN----NLTDTAWLLNYPGLV 251

Query: 180 WLFLRETAIEELPSSI-ERLLRLGHLDLSDCKRLKSLPSSLFKLKSLGVLNLGGCSNLQR 238
            + L    +E++      ++ RL  L +S+  RL +L      + +L VL+L    +L  
Sbjct: 252 EVDLSYNELEKIMYHPFVKMQRLERLYISNN-RLVALNLYGQPIPTLKVLDLSHN-HLLH 309

Query: 239 LPECLGQLSSPIILNLAKTNVERIPESIIQLFVLRYLLLSY 279
           +     Q      L L   ++  +  S      L+ L LS+
Sbjct: 310 VERNQPQFDRLENLYLDHNSIVTLKLST--HHTLKNLTLSH 348

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 47.0 bits (112), Expect = 4e-06
 Identities = 31/163 (19%), Positives = 56/163 (34%), Gaps = 8/163 (4%)

Query: 123 PTLMPHLNKLVILNLRGSKSLKSLPSGIFNLEFLTKLDLSGC--SKLKRLLEISSGNINW 180
            + + +      +++               L     +        KL   L  S   +  
Sbjct: 14  DSNLQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMRKLPAALLDSFRQVEL 73

Query: 181 LFLRETAIEELPSSI-ERLLRLGHLDLSDCKRLKSLPSSLFK-LKSLGVLNLGGCSNLQR 238
           L L +  IEE+ +        +  L +     ++ LP  +F+ +  L VL L    +L  
Sbjct: 74  LNLNDLQIEEIDTYAFAYAHTIQKLYMGFN-AIRYLPPHVFQNVPLLTVLVLERN-DLSS 131

Query: 239 LP-ECLGQLSSPIILNLAKTNVERIPESIIQ-LFVLRYLLLSY 279
           LP            L+++  N+ERI +   Q    L+ L LS 
Sbjct: 132 LPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSS 174

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 44.3 bits (105), Expect = 3e-05
 Identities = 24/127 (18%), Positives = 52/127 (40%), Gaps = 12/127 (9%)

Query: 128 HLNKLVILNLRGSKSLKSLPSGIF-NLEFLTKLDLSGCSKLKRLLEISSG--NINWLFLR 184
           +   LV ++L  ++ L+ +    F  ++ L +L +S  ++L  L         +  L L 
Sbjct: 246 NYPGLVEVDLSYNE-LEKIMYHPFVKMQRLERLYISN-NRLVALNLYGQPIPTLKVLDLS 303

Query: 185 ETAIEELPSSIERLLRLGHLDLSDCKRLKSLPSSLFKLKSLGVLNLGG----CSNLQRLP 240
              +  +  +  +  RL +L L     + +L  S     +L  L L      C++L+ L 
Sbjct: 304 HNHLLHVERNQPQFDRLENLYLDHN-SIVTLKLSTH--HTLKNLTLSHNDWDCNSLRALF 360

Query: 241 ECLGQLS 247
             + + +
Sbjct: 361 RNVARPA 367

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 51.6 bits (124), Expect = 1e-07
 Identities = 29/157 (18%), Positives = 57/157 (36%), Gaps = 6/157 (3%)

Query: 128 HLNKLVILNLRGSK-SLKSLPSGIFNLEFLTKLDLSGCSKLKRLLEISSGNINWLFLRET 186
            L  +  + + G+         G F+   L  L +S   KL  + +     +N L L   
Sbjct: 145 GLRNMNCIEMGGNPLENSGFEPGAFDGLKLNYLRISEA-KLTGIPKDLPETLNELHLDHN 203

Query: 187 AIEELPS-SIERLLRLGHLDLSDCKRLKSLPSSLFK-LKSLGVLNLGGCSNLQRLPECLG 244
            I+ +    + R  +L  L L   + ++ + +     L +L  L+L     L R+P  L 
Sbjct: 204 KIQAIELEDLLRYSKLYRLGLGHNQ-IRMIENGSLSFLPTLRELHLDNN-KLSRVPAGLP 261

Query: 245 QLSSPIILNLAKTNVERIPESIIQLFVLRYLLLSYSE 281
            L    ++ L   N+ ++  +             Y+ 
Sbjct: 262 DLKLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNG 298

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 46.2 bits (110), Expect = 6e-06
 Identities = 49/241 (20%), Positives = 93/241 (38%), Gaps = 43/241 (17%)

Query: 70  LKSLPSNLSAEKLVFLKVPYSDIEQLWNGE-KHYSNLNQIINATCNKLIAKTPNPTLMPH 128
           LK++P  +S +    L +  +DI +L   + K   +L   +    NK I+K         
Sbjct: 45  LKAVPKEISPD-TTLLDLQNNDISELRKDDFKGLQHL-YALVLVNNK-ISKIHEKAFS-P 100

Query: 129 LNKLVILNLRGSKSLKSLPSGIFNLEFLTKLDLSGCSKLKRLLEISSG------NINWLF 182
           L KL  L +  +  L  +P  +     L +L +       R+ ++  G      N+N + 
Sbjct: 101 LRKLQKLYISKNH-LVEIPPNLP--SSLVELRIHDN----RIRKVPKGVFSGLRNMNCIE 153

Query: 183 LRETAIEE--LPSSIERLLRLGHLDLSDCKRLKSLPSSLF-----------KLKSLGVLN 229
           +    +E           L+L +L +S+  +L  +P  L            K++++ + +
Sbjct: 154 MGGNPLENSGFEPGAFDGLKLNYLRISEA-KLTGIPKDLPETLNELHLDHNKIQAIELED 212

Query: 230 LGGCSNLQRL-----------PECLGQLSSPIILNLAKTNVERIPESIIQLFVLRYLLLS 278
           L   S L RL              L  L +   L+L    + R+P  +  L +L+ + L 
Sbjct: 213 LLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLSRVPAGLPDLKLLQVVYLH 272

Query: 279 Y 279
            
Sbjct: 273 T 273

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 51.3 bits (123), Expect = 1e-07
 Identities = 32/118 (27%), Positives = 46/118 (38%), Gaps = 14/118 (11%)

Query: 123 PTLMPHLNKLVILNLRGSKSLKSLPSGIF-NLEFLTKLDLSGCSKLKRLLEISSG----- 176
           P L   L  L +L++  ++ L SLP G    L  L +L L G      L  +  G     
Sbjct: 93  PLLGQTLPALTVLDVSFNR-LTSLPLGALRGLGELQELYLKG----NELKTLPPGLLTPT 147

Query: 177 -NINWLFLRETAIEELPSSI-ERLLRLGHLDLSDCKRLKSLPSSLFKLKSLGVLNLGG 232
             +  L L    + ELP+ +   L  L  L L +   L ++P   F    L    L G
Sbjct: 148 PKLEKLSLANNNLTELPAGLLNGLENLDTLLLQE-NSLYTIPKGFFGSHLLPFAFLHG 204

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 49.7 bits (119), Expect = 4e-07
 Identities = 40/175 (22%), Positives = 66/175 (37%), Gaps = 34/175 (19%)

Query: 140 SKSLKSLPSGIF----------------------NLEFLTKLDLSGCSKLKRLLEISSGN 177
            ++L +LP  +                           LT+L+L      K  ++ +   
Sbjct: 19  KRNLTALPPDLPKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVDGTLPV 78

Query: 178 INWLFLRETAIEELPSSIERLLRLGHLDLSDCKRLKSLPSSLF-KLKSLGVLNLGGCSNL 236
           +  L L    ++ LP   + L  L  LD+S  + L SLP      L  L  L L G + L
Sbjct: 79  LGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNR-LTSLPLGALRGLGELQELYLKG-NEL 136

Query: 237 QRLPE----CLGQLSSPIILNLAKTNVERIPESIIQ-LFVLRYLLLSYSERIQSV 286
           + LP        +L     L+LA  N+  +P  ++  L  L  LLL     + ++
Sbjct: 137 KTLPPGLLTPTPKLE---KLSLANNNLTELPAGLLNGLENLDTLLLQ-ENSLYTI 187

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 49.7 bits (119), Expect = 4e-07
 Identities = 34/122 (27%), Positives = 54/122 (44%), Gaps = 15/122 (12%)

Query: 128 HLNKLVILNLRGSKSLKSLPSGIFNLEFLTKLDLSGCSKLKRLLEISSG------NINWL 181
            L  L  L+L     L+SLP     L  LT LD+S      RL  +  G       +  L
Sbjct: 75  TLPVLGTLDLS-HNQLQSLPLLGQTLPALTVLDVSFN----RLTSLPLGALRGLGELQEL 129

Query: 182 FLRETAIEELPSSI-ERLLRLGHLDLSDCKRLKSLPSSLF-KLKSLGVLNLGGCSNLQRL 239
           +L+   ++ LP  +     +L  L L++   L  LP+ L   L++L  L L   ++L  +
Sbjct: 130 YLKGNELKTLPPGLLTPTPKLEKLSLANNN-LTELPAGLLNGLENLDTLLLQE-NSLYTI 187

Query: 240 PE 241
           P+
Sbjct: 188 PK 189

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 51.2 bits (123), Expect = 1e-07
 Identities = 26/178 (14%), Positives = 67/178 (37%), Gaps = 15/178 (8%)

Query: 123 PTLMPHLNKLVILNLRGSK-SLKSLPSGIF-NLEFLTKLDLSGCSKLKRLLEISSGNINW 180
            ++   LN+++++ L  +      + +G F  ++ L+ + ++    +  + +    ++  
Sbjct: 138 KSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADT-NITTIPQGLPPSLTE 196

Query: 181 LFLRETAIEELPS-SIERLLRLGHLDLSDCKRLKSLPSSLFK-LKSLGVLNLGGCSNLQR 238
           L L    I ++ + S++ L  L  L LS    + ++ +        L  L+L     L +
Sbjct: 197 LHLDGNKITKVDAASLKGLNNLAKLGLSFNS-ISAVDNGSLANTPHLRELHLNNN-KLVK 254

Query: 239 LPECLGQLSSPIILNLAKTNVERIPESIIQLFV-------LRYLLLSYSERIQSVSLP 289
           +P  L       ++ L   N+  I  +                + L  +  +Q   + 
Sbjct: 255 VPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSN-PVQYWEIQ 311

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 46.9 bits (112), Expect = 4e-06
 Identities = 41/239 (17%), Positives = 91/239 (38%), Gaps = 38/239 (15%)

Query: 70  LKSLPSNLSAEKLVFLKVPYSDIEQLWNGE-KHYSNLNQIINATCNKLIAKTPNPTLMPH 128
           L+ +P +L  +    L +  + I ++ +G+ K+  NL   +    NK+     +P     
Sbjct: 43  LEKVPKDLPPD-TALLDLQNNKITEIKDGDFKNLKNL-HTLILINNKI--SKISPGAFAP 98

Query: 129 LNKLVILNLRGSKSLKSLPSGIF-----------NLEFLTKLDLSGCSKLKRL------- 170
           L KL  L L  ++ LK LP  +             +  + K   +G +++  +       
Sbjct: 99  LVKLERLYLSKNQ-LKELPEKMPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPL 157

Query: 171 --LEISSG------NINWLFLRETAIEELPSSIERLLRLGHLDLSDCKRLKSLPSSLFK- 221
               I +G       ++++ + +T I  +P  +     L  L L    ++  + ++  K 
Sbjct: 158 KSSGIENGAFQGMKKLSYIRIADTNITTIPQGL--PPSLTELHLDGN-KITKVDAASLKG 214

Query: 222 LKSLGVLNLGGCSNLQRLPE-CLGQLSSPIILNLAKTNVERIPESIIQLFVLRYLLLSY 279
           L +L  L L    ++  +    L        L+L    + ++P  +     ++ + L  
Sbjct: 215 LNNLAKLGLSFN-SISAVDNGSLANTPHLRELHLNNNKLVKVPGGLADHKYIQVVYLHN 272

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 51.4 bits (123), Expect = 2e-07
 Identities = 38/270 (14%), Positives = 80/270 (29%), Gaps = 23/270 (8%)

Query: 20  LNLSTFTKMPKLRFLKFYSSSFNGENKCKVSYLQDPRFAEVKYFHWHGYPLKSLPSNLSA 79
            N+    +  K  +     +      K     L +       +         +     S 
Sbjct: 195 SNIKCVLEDNKCSYFLSILAKLQTNPKLSNLTLNNIETTWNSFIRILQLVWHTTVWYFSI 254

Query: 80  EKLVFLKVPYSDIEQLWNGEKHYSNLNQIINATCNKLIAKTPNPTLMPHLNKLVILNLRG 139
             +                     +++Q+++   +      P   +    + + I N   
Sbjct: 255 SNVKLQGQLDFRDFDYSGTSLKALSIHQVVS---DVF--GFPQSYIYEIFSNMNIKNFTV 309

Query: 140 SKSLKSLPSGIFN-LEFLTKLDLSGCSKLKRLLEISSGNIN------WLFLRETAIEELP 192
           S   + +     + +     LD S       L +    N         L L+   ++EL 
Sbjct: 310 SG-TRMVHMLCPSKISPFLHLDFSNN----LLTDTVFENCGHLTELETLILQMNQLKELS 364

Query: 193 SSIE---RLLRLGHLDLSDCKRLKSLPSSLF-KLKSLGVLNLGGCSNLQRLPECLGQLSS 248
              E   ++  L  LD+S                KSL  LN+        +  CL     
Sbjct: 365 KIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRCLPPRIK 424

Query: 249 PIILNLAKTNVERIPESIIQLFVLRYLLLS 278
             +L+L    ++ IP+ +++L  L+ L ++
Sbjct: 425 --VLDLHSNKIKSIPKQVVKLEALQELNVA 452

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 45.2 bits (107), Expect = 2e-05
 Identities = 33/232 (14%), Positives = 78/232 (33%), Gaps = 16/232 (6%)

Query: 20  LNLSTFTKMPKLRFLKFYSSSFNGENKCKVSYLQDPRFAEVKYFHWHGYPLKSLPSNLSA 79
           + +        + +    +    G+   +           +              S +  
Sbjct: 238 IRILQLVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVFGFPQSYIYE 297

Query: 80  E--KLVFLKVPYSDIEQLWNGEKHYSNLNQIINATCNKLIAKTPNPTLMPHLNKLVILNL 137
               +       S    +        +    ++ + N L           HL +L  L L
Sbjct: 298 IFSNMNIKNFTVSGTRMVHMLCPSKISPFLHLDFSNNLLTDTVFE--NCGHLTELETLIL 355

Query: 138 RGSKSLKSLP--SGIF-NLEFLTKLDLSGCSKLKRLLEI---SSGNINWLFLRETAIEEL 191
           + ++ LK L   + +   ++ L +LD+S  S      +     + ++  L +    + + 
Sbjct: 356 QMNQ-LKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDT 414

Query: 192 P-SSIERLLRLGHLDLSDCKRLKSLPSSLFKLKSLGVLNLGGCSNLQRLPEC 242
               +   +++  LDL   K +KS+P  + KL++L  LN+     L+ +P+ 
Sbjct: 415 IFRCLPPRIKV--LDLHSNK-IKSIPKQVVKLEALQELNVASN-QLKSVPDG 462

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 42.2 bits (99), Expect = 2e-04
 Identities = 35/159 (22%), Positives = 58/159 (36%), Gaps = 19/159 (11%)

Query: 140 SKSLKSLPSGIFNLEFLTKLDLSGCSKLKRLLEISSGNIN------WLFLRETAIEELPS 193
              L  +P  +      T L++S       + E+ + +I        L +    I+ L  
Sbjct: 9   KNGLIHVPKDLSQK--TTILNISQ----NYISELWTSDILSLSKLRILIISHNRIQYLDI 62

Query: 194 SI-ERLLRLGHLDLSDCKRLKSLPSSLFKLKSLGVLNLGGCSNLQRLPEC--LGQLSSPI 250
           S+ +    L +LDLS  K L  +        +L  L+L        LP C   G +S   
Sbjct: 63  SVFKFNQELEYLDLSHNK-LVKISCH--PTVNLKHLDLSFN-AFDALPICKEFGNMSQLK 118

Query: 251 ILNLAKTNVERIPESIIQLFVLRYLLLSYSERIQSVSLP 289
            L L+ T++E+     I    +  +LL   E       P
Sbjct: 119 FLGLSTTHLEKSSVLPIAHLNISKVLLVLGETYGEKEDP 157

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 40.6 bits (95), Expect = 5e-04
 Identities = 30/260 (11%), Positives = 75/260 (28%), Gaps = 14/260 (5%)

Query: 23  STFTKMPKLRFLKFYSSSFNGENKCKVSYLQDPRFAEVKYFHWHGYPLKSLPSNLSAEKL 82
             F  M +L+FL   ++     +   +++L   +   V    +          + + E L
Sbjct: 109 KEFGNMSQLKFLGLSTTHLEKSSVLPIAHLNISKVLLVLGETYGEKEDPEGLQDFNTESL 168

Query: 83  VFLKVPYSDIEQLWNGEKHYSNLNQIINATCNKLIAKTPNPTLMPHLNKLVILNLRGSKS 142
             +     +   + +         ++ N  C           L  +     +  L   ++
Sbjct: 169 HIVFPTNKEFHFILDVSVKTVANLELSNIKCV----------LEDNKCSYFLSILAKLQT 218

Query: 143 LKSLPSGIFNLEFLTKLDLSGCSKLKRLLEISSGNINWLFLRETAIEELPSSIERLLRLG 202
              L +   N    T        +L     +   +I+ + L+              L+  
Sbjct: 219 NPKLSNLTLNNIETTWNSFIRILQLVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKAL 278

Query: 203 HLDLSDCKRLKSLPSSLF-KLKSLGVLNLGGCSNLQRLPE-CLGQLSSPIILNLAKTNVE 260
            +            S ++    ++ + N    S  + +   C  ++S  + L+ +   + 
Sbjct: 279 SIHQVVSDVFGFPQSYIYEIFSNMNIKNF-TVSGTRMVHMLCPSKISPFLHLDFSNNLLT 337

Query: 261 RIPESII-QLFVLRYLLLSY 279
                    L  L  L+L  
Sbjct: 338 DTVFENCGHLTELETLILQM 357

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 50.9 bits (121), Expect = 3e-07
 Identities = 38/211 (18%), Positives = 65/211 (30%), Gaps = 15/211 (7%)

Query: 73  LPSNLSAEKLVFLKVPYSDIEQLWNGEKHYSNLNQIINATCNKLIAKTPNPTLMPHLNKL 132
               LS EK   L+      ++L   E         I      L         + + + L
Sbjct: 352 FRCELSVEKSTVLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTL 411

Query: 133 VILN--------LRGSKSLKSLPSGIFNLEFLTKLDLSGCSKLKRLLEISS-GNINWLFL 183
             ++           SK L            +  L L+    L  L  +     +  L L
Sbjct: 412 KAVDPMRAAYLDDLRSKFLLENSVLKMEYADVRVLHLAHK-DLTVLCHLEQLLLVTHLDL 470

Query: 184 RETAIEELPSSIERLLRLGHLDLSDCKRLKSLPSSLFKLKSLGVLNLGGCSNLQRLPE-- 241
               +  LP ++  L  L  L  SD   L+++   +  L  L  L L     LQ+     
Sbjct: 471 SHNRLRALPPALAALRCLEVLQASDN-ALENVD-GVANLPRLQELLLCNN-RLQQSAAIQ 527

Query: 242 CLGQLSSPIILNLAKTNVERIPESIIQLFVL 272
            L      ++LNL   ++ +      +L  +
Sbjct: 528 PLVSCPRLVLLNLQGNSLCQEEGIQERLAEM 558

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 43.2 bits (101), Expect = 8e-05
 Identities = 42/267 (15%), Positives = 80/267 (29%), Gaps = 21/267 (7%)

Query: 31  LRFLKFYSSSFNGENKCKVSYLQDPRFAEVKYFHWHGYPLKSLPSNLSAEKLVFLKVP-- 88
            R+L   +   +      VS  +             G  + +L   +    L        
Sbjct: 232 HRWLLGRAEPHDVLCCVHVSREEACLSVCFSRPLTVGSRMGTLLLMVDEAPLSVEWRTPD 291

Query: 89  -YSDIEQLWNGEKHYSNLNQIINATCNKLIAKTPNPT----LMPHLNKLVILNLRGSKSL 143
             +    +W  +   ++LN  +     ++I    +      L+    +    +    + L
Sbjct: 292 GRNRPSHVWLCDLPAASLNDQLPQHTFRVIWTGSDSQKECVLLKDRPECWCRDSATDEQL 351

Query: 144 KSLPSGIFNLEFLTKLDLSGCSKLKRLLEISSGNINWLFLRETAIEELPSSIERLLRLGH 203
                 +     L     S C +L+ L   +   +  + L   A++ L    E L     
Sbjct: 352 FRCELSVEKSTVLQSELES-CKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFST 410

Query: 204 LDLSDCKR-----------LKSLPSSLFKLKSLGVLNLGGCSNLQRLPECLGQLSSPIIL 252
           L   D  R           L        +   + VL+L    +L  L   L QL     L
Sbjct: 411 LKAVDPMRAAYLDDLRSKFLLENSVLKMEYADVRVLHLAHK-DLTVLCH-LEQLLLVTHL 468

Query: 253 NLAKTNVERIPESIIQLFVLRYLLLSY 279
           +L+   +  +P ++  L  L  L  S 
Sbjct: 469 DLSHNRLRALPPALAALRCLEVLQASD 495

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 50.1 bits (120), Expect = 4e-07
 Identities = 37/241 (15%), Positives = 73/241 (30%), Gaps = 38/241 (15%)

Query: 10  LDMSTVKEIRLNLSTFTKMPKLRFLKFYSSSFNGENKCKVSYLQDPRFAEVKYFHWHGYP 69
                   +RL+  T   M +         +           L              G  
Sbjct: 177 FQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDL-------------SGNG 223

Query: 70  LKSLPSNLSAEKLVFLKVPYSDIEQLWNGEKHYSNLNQIINATCNKLIAKTPNPTLMPHL 129
            K   +     K  F  +  + I+ L       ++ N   +                   
Sbjct: 224 FKESMA-----KRFFDAIAGTKIQSLI----LSNSYNMGSSFGHTNFKDPDNFTFKGLEA 274

Query: 130 NKLVILNLRGSKSLKSLPSGIF-NLEFLTKLDLSGCSKLKRLLEISSG------NINWLF 182
           + +   +L     + +L   +F +   L +L L+       + +I         ++  L 
Sbjct: 275 SGVKTCDLS-KSKIFALLKSVFSHFTDLEQLTLAQ----NEINKIDDNAFWGLTHLLKLN 329

Query: 183 LRETAIEELPSSI-ERLLRLGHLDLSDCKRLKSLPSSLF-KLKSLGVLNLGGCSNLQRLP 240
           L +  +  + S + E L +L  LDLS    +++L    F  L +L  L L     L+ +P
Sbjct: 330 LSQNFLGSIDSRMFENLDKLEVLDLSYNH-IRALGDQSFLGLPNLKELALDTN-QLKSVP 387

Query: 241 E 241
           +
Sbjct: 388 D 388

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 45.5 bits (108), Expect = 1e-05
 Identities = 33/174 (18%), Positives = 54/174 (31%), Gaps = 29/174 (16%)

Query: 122 NPTLMPHLNKLVILNLRGSKSLKSLPSGIF-NLEFLTKLDLSGCSKLKRLLEISSGNINW 180
           N T    L  L  L +        + +  F  L  L  L L                   
Sbjct: 46  NETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQ--------------- 90

Query: 181 LFLRETAIEELPSSI-ERLLRLGHLDLSDCK-RLKSLPSSLF-KLKSLGVLNLGGCSNLQ 237
                    +L +     L  L  L L+ C      L  + F  L SL +L L   +N++
Sbjct: 91  -------FLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRD-NNIK 142

Query: 238 RL-PECL-GQLSSPIILNLAKTNVERIPESIIQLFVLRYLLLSYSERIQSVSLP 289
           ++ P      +    +L+L    V+ I E  +  F  ++  L     I    + 
Sbjct: 143 KIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSSITLQDMN 196

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 50.5 bits (120), Expect = 4e-07
 Identities = 45/153 (29%), Positives = 72/153 (47%), Gaps = 10/153 (6%)

Query: 128 HLNKLVILNLRGSKSLKSLPSGIFNLEFLTKLDLSGCSKLKRLLEISS-GNINWLFLRET 186
            LN +  +    S  +KS+  GI  L  +TKL L+G  KL  +  +++  N+ WLFL E 
Sbjct: 41  ELNSIDQIIANNSD-IKSV-QGIQYLPNVTKLFLNGN-KLTDIKPLTNLKNLGWLFLDEN 97

Query: 187 AIEELPSSIERLLRLGHLDLSDCKRLKSLPSSLFKLKSLGVLNLGGCSNLQRLPECLGQL 246
            I++L SS++ L +L  L L     +  + + L  L  L  L LG    +  +   L +L
Sbjct: 98  KIKDL-SSLKDLKKLKSLSLEHN-GISDI-NGLVHLPQLESLYLGNN-KITDI-TVLSRL 152

Query: 247 SSPIILNLAKTNVERIPESIIQLFVLRYLLLSY 279
           +    L+L    +  I   +  L  L+ L LS 
Sbjct: 153 TKLDTLSLEDNQISDI-VPLAGLTKLQNLYLSK 184

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 50.6 bits (120), Expect = 4e-07
 Identities = 49/337 (14%), Positives = 99/337 (29%), Gaps = 78/337 (23%)

Query: 10  LDMSTVKEIRLN--LSTFTKMPKLR-FLKFYSSSFNG--ENKCKVSYLQDPRFAE-VKYF 63
           L  +T   I L+    T T        LK+               +  +    AE ++  
Sbjct: 281 LSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDG 340

Query: 64  --HWHGYP--------------LKSL-PSNLSA--EKL-VF---LKVPYSDIEQLWNGEK 100
              W  +               L  L P+      ++L VF     +P   +  +W  + 
Sbjct: 341 LATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIW-FDV 399

Query: 101 HYSNLNQIINATCNK-LIAKTPNPTL--MPHLNKLVILNLRGSKSL-KSLPSGIFNLEFL 156
             S++  ++N      L+ K P  +   +P +   + + L    +L +S+   + +    
Sbjct: 400 IKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSI---VDHYNIP 456

Query: 157 TKLDLSGCSKLKRLLEISSGNINWLF---LRETAIEELPSSIERLLRLGHLDLSDCKRLK 213
              D                         L+     E  +    +     LD        
Sbjct: 457 KTFDSDDLIPPY-----LDQYFYSHIGHHLKNIEHPERMTLFRMVF----LDFR------ 501

Query: 214 SLPSSLF---KLKSLGVLNLGGCSNLQRLPECLGQL---SSPIILNLAKTNVERIPESII 267
                 F   K++           ++      L QL      I  N      ER+  +I+
Sbjct: 502 ------FLEQKIRHDS-TAWNASGSILNT---LQQLKFYKPYICDN--DPKYERLVNAIL 549

Query: 268 QLFVLRY---LLLS-YSERIQSVSLPLARGILEDTQR 300
             F+ +    L+ S Y++ ++   +     I E+  +
Sbjct: 550 D-FLPKIEENLICSKYTDLLRIALMAEDEAIFEEAHK 585

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 49.9 bits (118), Expect = 8e-07
 Identities = 55/398 (13%), Positives = 116/398 (29%), Gaps = 109/398 (27%)

Query: 3   KKIEGICLDMSTVKEIRLNLSTFTKMPKLRFLKFYSSSFNGENKCKVSYLQDPRFAEV-- 60
           K ++ +   + + +EI   + +   +     L F++     E   +       +F E   
Sbjct: 36  KDVQDMPKSILSKEEIDHIIMSKDAVSGTLRL-FWTLLSKQEEMVQ-------KFVEEVL 87

Query: 61  -KYFHWHGYPLKSLPSNLSAEKLVFLKVPYSDIEQLWNGEKHYSNLN----QIINATCNK 115
              + +   P+K+     S    +++       ++L+N  + ++  N    Q        
Sbjct: 88  RINYKFLMSPIKTEQRQPSMMTRMYI----EQRDRLYNDNQVFAKYNVSRLQPYLKLRQA 143

Query: 116 LIAKTPNPTL----MPHLNK--LVILNLRGSKSLKSLPSGIF------------NLEFLT 157
           L+   P   +    +    K  + +      K    +   IF             LE L 
Sbjct: 144 LLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQ 203

Query: 158 KLDLSGCSKLKRLLEISSGNINWLFLRETAIEELPSSIERLLRL-GH----LDLSD---- 208
           KL      ++       S + + + LR   I  + + + RLL+   +    L L +    
Sbjct: 204 KL----LYQIDPNWTSRSDHSSNIKLR---IHSIQAELRRLLKSKPYENCLLVLLNVQNA 256

Query: 209 ---------CK----------------------RLKSLPSSLFKLKSLGVL-NLGGCSNL 236
                    CK                       L     +L   +   +L     C   
Sbjct: 257 KAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCR-P 315

Query: 237 QRLPE--CLGQLSSPIILNLAKTNVERIPESIIQLFVLRYLLLSYSERIQSVSL-----P 289
           Q LP         +P  L++     E I + +      +++       I   SL      
Sbjct: 316 QDLPREVLTT---NPRRLSII---AESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPA 369

Query: 290 LAR------GIL-EDTQRSPHMDHKLAVRWQEVQENVC 320
             R       +          +   L++ W +V ++  
Sbjct: 370 EYRKMFDRLSVFPPSAHIPTIL---LSLIWFDVIKSDV 404

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 50.0 bits (120), Expect = 5e-07
 Identities = 41/218 (18%), Positives = 72/218 (33%), Gaps = 35/218 (16%)

Query: 70  LKSLPSNLSAEKLVFLKVPYSDIEQLWNGE-KHYSNLNQIINATCNKLIAKTPNPTLMPH 128
              +P NL       L + ++ +  L +     +  L Q+++ +  ++  +T        
Sbjct: 19  FYKIPDNLP-FSTKNLDLSFNPLRHLGSYSFFSFPEL-QVLDLSRCEI--QTIEDGAYQS 74

Query: 129 LNKLVILNLRGSKSLKSLPSGIF-NLEFLTKLDLSGCSKLKRLLEISSGNINWLFLRETA 187
           L+ L  L L G+  ++SL  G F  L  L KL     + L  L                 
Sbjct: 75  LSHLSTLILTGN-PIQSLALGAFSGLSSLQKLVAVETN-LASL----------------- 115

Query: 188 IEELPSSIERLLRLGHLDLSDCKRLKSL--PSSLFKLKSLGVLNLGGCSNLQRLPECLGQ 245
                  I  L  L  L+++    ++S   P     L +L  L+L            L  
Sbjct: 116 ---ENFPIGHLKTLKELNVAHNL-IQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRV 171

Query: 246 LSS----PIILNLAKTNVERIPESIIQLFVLRYLLLSY 279
           L       + L+L+   +  I     +   L  L L  
Sbjct: 172 LHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLHKLTLRN 209

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 49.3 bits (118), Expect = 8e-07
 Identities = 35/162 (21%), Positives = 63/162 (38%), Gaps = 11/162 (6%)

Query: 127 PHLNKLVILNLRGSKSLKSLPSGIFNLEFLTKLDLSGCSKLKRLLEISSG-----NINWL 181
           P L    +  L  + +         +L  L  LDLS  + L      S       ++ +L
Sbjct: 320 PTLKLKSLKRLTFTSNKGGNAFSEVDLPSLEFLDLSR-NGLSFKGCCSQSDFGTTSLKYL 378

Query: 182 FLRETAIEELPSSIERLLRLGHLDLSDCKRLKSLPSSLFK-LKSLGVLNLGGCSNLQRL- 239
            L    +  + S+   L +L HLD       +    S+F  L++L  L++    + +   
Sbjct: 379 DLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHT-HTRVAF 437

Query: 240 PECLGQLSSPIILNLAKTNVER--IPESIIQLFVLRYLLLSY 279
                 LSS  +L +A  + +   +P+   +L  L +L LS 
Sbjct: 438 NGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQ 479

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 48.5 bits (116), Expect = 2e-06
 Identities = 50/273 (18%), Positives = 97/273 (35%), Gaps = 32/273 (11%)

Query: 22  LSTFTKMPKLRFLKFYSSSFNGENKCKVSYLQDPRFAEVKYFHWHGYPLKSLPSNLSAEK 81
           +  F+     + L+  +  F              +   +K   +      +  S +    
Sbjct: 297 VKDFSYNFGWQHLELVNCKFGQ--------FPTLKLKSLKRLTFTSNKGGNAFSEVDLPS 348

Query: 82  LVFLKVPYSDIEQLWNGEKHYSNLN--QIINATCNKLIAKTPNPTLMPHLNKLVILNLRG 139
           L FL +  + +       +        + ++ + N +       +    L +L  L+ + 
Sbjct: 349 LEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGV---ITMSSNFLGLEQLEHLDFQH 405

Query: 140 SKSLKSLPSGIF-NLEFLTKLDLSGCSKLKRLLEISSG------NINWLFLRETAIEE-- 190
           S   +     +F +L  L  LD+S            +G      ++  L +   + +E  
Sbjct: 406 SNLKQMSEFSVFLSLRNLIYLDISHT----HTRVAFNGIFNGLSSLEVLKMAGNSFQENF 461

Query: 191 LPSSIERLLRLGHLDLSDCKRLKSLPSSLFK-LKSLGVLNLGGCSNLQRLPEC-LGQLSS 248
           LP     L  L  LDLS C +L+ L  + F  L SL VLN+    N   L       L+S
Sbjct: 462 LPDIFTELRNLTFLDLSQC-QLEQLSPTAFNSLSSLQVLNMSHN-NFFSLDTFPYKCLNS 519

Query: 249 PIILNLAKTNVERIPESIIQLFV--LRYLLLSY 279
             +L+ +  ++    +  +Q F   L +L L+ 
Sbjct: 520 LQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQ 552

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 45.4 bits (108), Expect = 2e-05
 Identities = 30/115 (26%), Positives = 41/115 (35%), Gaps = 3/115 (2%)

Query: 177 NINWLFLRETAIEEL-PSSIERLLRLGHLDLSDCKRLKSLPSSLFKLKSLGVLNLGGCSN 235
           +   L L    +  L   S      L  LDLS C+       +   L  L  L L G   
Sbjct: 29  STKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPI 88

Query: 236 LQRLPECLGQLSSPIILNLAKTNVER-IPESIIQLFVLRYLLLSYSERIQSVSLP 289
                     LSS   L   +TN+       I  L  L+ L ++++  IQS  LP
Sbjct: 89  QSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHN-LIQSFKLP 142

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 42.3 bits (100), Expect = 1e-04
 Identities = 35/177 (19%), Positives = 62/177 (35%), Gaps = 22/177 (12%)

Query: 123 PTLMPHLNKLVILNLRGSKSLKSL--PSGIFNLEFLTKLDLSGCSKLKRLLEISSGNIN- 179
              + HL  L  LN+  +  ++S   P    NL  L  LDLS   K++ +       ++ 
Sbjct: 117 NFPIGHLKTLKELNVAHNL-IQSFKLPEYFSNLTNLEHLDLSSN-KIQSIYCTDLRVLHQ 174

Query: 180 ------WLFLRETAIEELPSSIERLLRLGHLDLSDCKRLKSLPSSLFK-LKSLGVLNL-- 230
                  L L    +  +     + +RL  L L +     ++  +  + L  L V  L  
Sbjct: 175 MPLLNLSLDLSLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVL 234

Query: 231 ---GGCSNLQRLPEC-LGQLSSPIILNLAKTNVERIPESIIQLF----VLRYLLLSY 279
                  NL++  +  L  L +  I       ++   + II LF     +    L  
Sbjct: 235 GEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVS 291

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 49.5 bits (118), Expect = 5e-07
 Identities = 35/162 (21%), Positives = 67/162 (41%), Gaps = 23/162 (14%)

Query: 140 SKSLKSLPSGIFNLEFLTKLDLSGCSKLKRLLEISSG-------NINWLFLRETAIEELP 192
            + L ++P  + +  +   LDLS       L  + +        N++ L L    +  + 
Sbjct: 27  KQQLPNVPQSLPS--YTALLDLSHN----NLSRLRAEWTPTRLTNLHSLLLSHNHLNFIS 80

Query: 193 SSI-ERLLRLGHLDLSDCKRLKSLPSSLF-KLKSLGVLNLGGCSNLQRLPE-CLGQLSSP 249
           S     +  L +LDLS    L +L   LF  L++L VL L    ++  +       ++  
Sbjct: 81  SEAFVPVPNLRYLDLSSNH-LHTLDEFLFSDLQALEVLLLYNN-HIVVVDRNAFEDMAQL 138

Query: 250 IILNLAKTNVERIPESIIQ----LFVLRYLLLSYSERIQSVS 287
             L L++  + R P  +I+    L  L  L LS + +++ + 
Sbjct: 139 QKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSN-KLKKLP 179

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 49.1 bits (117), Expect = 9e-07
 Identities = 32/149 (21%), Positives = 57/149 (38%), Gaps = 21/149 (14%)

Query: 134 ILNLRGSKSLKSLPSGIF--NLEFLTKLDLSGCSKLKRLLEISSG------NINWLFLRE 185
           +L+L  +  L  L +      L  L  L LS       L  ISS       N+ +L L  
Sbjct: 43  LLDLSHNN-LSRLRAEWTPTRLTNLHSLLLSHN----HLNFISSEAFVPVPNLRYLDLSS 97

Query: 186 TAIEELPSSI-ERLLRLGHLDLSDCKRLKSLPSSLF-KLKSLGVLNLGGCSNLQRLPE-- 241
             +  L   +   L  L  L L +   +  +  + F  +  L  L L     + R P   
Sbjct: 98  NHLHTLDEFLFSDLQALEVLLLYNNH-IVVVDRNAFEDMAQLQKLYLSQN-QISRFPVEL 155

Query: 242 --CLGQLSSPIILNLAKTNVERIPESIIQ 268
                +L   ++L+L+   ++++P + +Q
Sbjct: 156 IKDGNKLPKLMLLDLSSNKLKKLPLTDLQ 184

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Length = 251

 Score = 48.2 bits (115), Expect = 9e-07
 Identities = 38/128 (29%), Positives = 63/128 (49%), Gaps = 16/128 (12%)

Query: 123 PTLMPHLNKLVILNLRGSKSLKSLPSGIFN-LEFLTKLDLSGCSKLKRLLEISSG----- 176
                 L KL  LNL     L++L +G+F+ L  L  L L+      +L  +  G     
Sbjct: 52  DATFRGLTKLTWLNL-DYNQLQTLSAGVFDDLTELGTLGLAN----NQLASLPLGVFDHL 106

Query: 177 -NINWLFLRETAIEELPSSI-ERLLRLGHLDLSDCKRLKSLPSSLF-KLKSLGVLNLGGC 233
             ++ L+L    ++ LPS + +RL +L  L L +  +L+S+P+  F KL +L  L+L   
Sbjct: 107 TQLDKLYLGGNQLKSLPSGVFDRLTKLKELRL-NTNQLQSIPAGAFDKLTNLQTLSLST- 164

Query: 234 SNLQRLPE 241
           + LQ +P 
Sbjct: 165 NQLQSVPH 172

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Length = 251

 Score = 43.9 bits (104), Expect = 3e-05
 Identities = 36/106 (33%), Positives = 51/106 (48%), Gaps = 8/106 (7%)

Query: 140 SKSLKSLPSGI-FNLEFLTKLDLSGCSKLKRLLEISSGNINWLFLRETAIEELPSSI-ER 197
            KSL S+PSGI  + E L  L  +G + L          + WL L    ++ L + + + 
Sbjct: 23  GKSLDSVPSGIPADTEKL-DLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDD 81

Query: 198 LLRLGHLDLSDCKRLKSLPSSLF-KLKSLGVLNLGGCSN-LQRLPE 241
           L  LG L L++  +L SLP  +F  L  L  L LG   N L+ LP 
Sbjct: 82  LTELGTLGLAN-NQLASLPLGVFDHLTQLDKLYLG--GNQLKSLPS 124

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 49.0 bits (117), Expect = 1e-06
 Identities = 50/233 (21%), Positives = 88/233 (37%), Gaps = 28/233 (12%)

Query: 70  LKSLPSNLSAEKLVFLKVPYSDIEQLWNGE-KHYSNLNQIINATCNKLIAKTPNPTLMPH 128
             S+PS L+A  +  L + ++ I  + +G+ +  +NL Q++    +++   T        
Sbjct: 17  FTSIPSGLTA-AMKSLDLSFNKITYIGHGDLRACANL-QVLILKSSRI--NTIEGDAFYS 72

Query: 129 LNKLVILNLRGSKSLKSLPSGIF-NLEFLTKLDLSGC-----------SKLKRLLEISSG 176
           L  L  L+L  +  L SL S  F  L  L  L+L G              L  L  +  G
Sbjct: 73  LGSLEHLDLSDNH-LSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIG 131

Query: 177 NINWLFLRETAIEELP-SSIERLLRLGHLDLSDCKRLKSLPSSLFK-LKSLGVLNLGGCS 234
           N+           E+       L  L  L++     L++  S   K ++ +  L L    
Sbjct: 132 NVE-------TFSEIRRIDFAGLTSLNELEIKALS-LRNYQSQSLKSIRDIHHLTLHLSE 183

Query: 235 NLQRLPECLGQLSSPIILNLAKTNVERIPESIIQLFVLRYLLLSYSERIQSVS 287
           +   L      LSS   L L  TN+ R   S + +  +   +   + R   ++
Sbjct: 184 SAFLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLT 236

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 48.2 bits (115), Expect = 2e-06
 Identities = 22/124 (17%), Positives = 47/124 (37%), Gaps = 7/124 (5%)

Query: 107 QIINATCNKLIAKTPNPTLMPHLNKLVILNLRGSKSLKSLPSGIFNLEFLTKLDLSGCSK 166
           Q +  + N L +      ++  L  L  L++  +     +P      E +  L+LS    
Sbjct: 364 QTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNT-FHPMPDSCQWPEKMRFLNLSST-G 421

Query: 167 LKRLLEISSGNINWLFLRETAIEELPSSIERLLRLGHLDLSDCKRLKSLPSSLFKLKSLG 226
           ++ +       +  L +    ++     + RL     L +S   +LK+LP +      L 
Sbjct: 422 IRVVKTCIPQTLEVLDVSNNNLDSFSLFLPRLQ---ELYISRN-KLKTLPDASL-FPVLL 476

Query: 227 VLNL 230
           V+ +
Sbjct: 477 VMKI 480

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 45.1 bits (107), Expect = 2e-05
 Identities = 41/290 (14%), Positives = 91/290 (31%), Gaps = 43/290 (14%)

Query: 10  LDMSTVKEIRLNLSTFTKMPKLRFLKFYSS--------SFNGENKCKVSYLQDPRFAEVK 61
           L++  +        +   +  +  L  + S          +  +  +   L+D   A  +
Sbjct: 153 LEIKALSLRNYQSQSLKSIRDIHHLTLHLSESAFLLEIFADILSSVRYLELRDTNLARFQ 212

Query: 62  YFHWHGYPLKSLPSNLSAEKLVFLKVPYSDIEQLWNGEKHYSNLNQIINATCNKLIAKTP 121
           +       + S    L+    V     ++++ +L       S +                
Sbjct: 213 FSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEFDDCTLNGLGDFNPS 272

Query: 122 NPTLMPHLNKLVILNLRG----SKSLKSLPSGIF-NLEFLTKLDLSGCSKLKRLLEISSG 176
              ++  L K+  + +R        L    S ++  LE + ++ +               
Sbjct: 273 ESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSK----------- 321

Query: 177 NINWLFLRETAIEELPSSI-ERLLRLGHLDLSDCKRLKSL----PSSLFKLKSLGVLNLG 231
                      +  +P S  + L  L  LDLS+   +        +      SL  L L 
Sbjct: 322 -----------VFLVPCSFSQHLKSLEFLDLSENL-MVEEYLKNSACKGAWPSLQTLVLS 369

Query: 232 GC--SNLQRLPECLGQLSSPIILNLAKTNVERIPESIIQLFVLRYLLLSY 279
                ++Q+  E L  L +   L++++     +P+S      +R+L LS 
Sbjct: 370 QNHLRSMQKTGEILLTLKNLTSLDISRNTFHPMPDSCQWPEKMRFLNLSS 419

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} Length = 229

 Score = 47.4 bits (113), Expect = 2e-06
 Identities = 38/128 (29%), Positives = 62/128 (48%), Gaps = 6/128 (4%)

Query: 140 SKSLKSLPSGIFNLEFLTKLDLSGCSKLKRLLEISSGNINWLFLRETAIEELPSSI-ERL 198
           SK   S+P+GI     +  L  +  +KL+  +  S  N+  L+L    +  LP  + + L
Sbjct: 28  SKRHASVPAGIPTNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSL 87

Query: 199 LRLGHLDLSDCKRLKSLPSSLF-KLKSLGVLNLGGCSN-LQRLPECLGQLSSPIILNLAK 256
            +L  LDL    +L  LPS++F +L  L  L +  C N L  LP  + +L+    L L +
Sbjct: 88  TQLTVLDLGT-NQLTVLPSAVFDRLVHLKELFM--CCNKLTELPRGIERLTHLTHLALDQ 144

Query: 257 TNVERIPE 264
             ++ IP 
Sbjct: 145 NQLKSIPH 152

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} Length = 229

 Score = 44.3 bits (105), Expect = 2e-05
 Identities = 42/158 (26%), Positives = 66/158 (41%), Gaps = 29/158 (18%)

Query: 70  LKSLPSNLSAEKLVFLKVPYSDIEQLWNGEKHYSNLNQIINATCNKLIAKTPNPTLMPHL 129
             S+P+ +     + L +  + I +L  G        + +    N+L        +   L
Sbjct: 31  HASVPAGIPTNAQI-LYLHDNQITKLEPGVFDSLINLKELYLGSNQL--GALPVGVFDSL 87

Query: 130 NKLVILNLRGSKSLKSLPSGIFN-LEFLTKLDLSGCSKLKRLLEISSGNINWLFLRETAI 188
            +L +L+L  ++ L  LPS +F+ L  L +L +  C+KL                     
Sbjct: 88  TQLTVLDLGTNQ-LTVLPSAVFDRLVHLKELFMC-CNKLT-------------------- 125

Query: 189 EELPSSIERLLRLGHLDLSDCKRLKSLPSSLF-KLKSL 225
            ELP  IERL  L HL L   + LKS+P   F +L SL
Sbjct: 126 -ELPRGIERLTHLTHLALDQNQ-LKSIPHGAFDRLSSL 161

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 47.9 bits (114), Expect = 2e-06
 Identities = 29/132 (21%), Positives = 51/132 (38%), Gaps = 11/132 (8%)

Query: 107 QIINATCNKLIAKTPNPTLMPHLNKLVILNLRGSKSLKSLPSGIFNLEF-----LTKLDL 161
           Q +    N L        +  +++ L  L++    SL SL S  ++        +  L+L
Sbjct: 380 QTLILQRNGLKNFFKVALMTKNMSSLETLDV----SLNSLNSHAYDRTCAWAESILVLNL 435

Query: 162 SGCSKLKRLLEISSGNINWLFLRETAIEELPSSIERLLRLGHLDLSDCKRLKSLPSSLFK 221
           S       +       +  L L    I  +P  +  L  L  L+++   +LKS+P  +F 
Sbjct: 436 SSNMLTGSVFRCLPPKVKVLDLHNNRIMSIPKDVTHLQALQELNVAS-NQLKSVPDGVFD 494

Query: 222 -LKSLGVLNLGG 232
            L SL  + L  
Sbjct: 495 RLTSLQYIWLHD 506

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 44.9 bits (106), Expect = 2e-05
 Identities = 39/284 (13%), Positives = 82/284 (28%), Gaps = 28/284 (9%)

Query: 8   ICLDMSTVKEIRLNLSTFTKMPKLRFLKFYSSSFNGENKCKVSYLQDPRFAEVKYFHWHG 67
           + + ++ +  ++L+          R + F S    G     V+ LQ              
Sbjct: 213 VNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVT-LQHIETTWKCSVKLFQ 271

Query: 68  YPLKSLPSNLSAEKLVFLKVPYSDIEQLWNGEKHYSNLNQIINATCNKLIAKTPNPTLMP 127
           +        L+   L   +    +             +  + N      +       L  
Sbjct: 272 FFWPRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKN---QVFL--FSKEALYS 326

Query: 128 HLNKLVILNLRGSKSLKSLPSGIFN-LEFLTKLDLSGCSKLKRLLEISSG------NINW 180
              ++ I  L  S     +           T L+ +         +           +  
Sbjct: 327 VFAEMNIKMLSISD-TPFIHMVCPPSPSSFTFLNFTQN----VFTDSVFQGCSTLKRLQT 381

Query: 181 LFLRETAIEELPSSIERLLRLGHLDLSDCKRLKSLPSSLFK-----LKSLGVLNLGGCSN 235
           L L+   ++           +  L+  D   L SL S  +       +S+ VLNL     
Sbjct: 382 LILQRNGLKNFFKVALMTKNMSSLETLDV-SLNSLNSHAYDRTCAWAESILVLNLSSNML 440

Query: 236 LQRLPECL-GQLSSPIILNLAKTNVERIPESIIQLFVLRYLLLS 278
              +  CL  ++    +L+L    +  IP+ +  L  L+ L ++
Sbjct: 441 TGSVFRCLPPKVK---VLDLHNNRIMSIPKDVTHLQALQELNVA 481

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 47.5 bits (114), Expect = 3e-06
 Identities = 32/154 (20%), Positives = 62/154 (40%), Gaps = 9/154 (5%)

Query: 127 PHLNKLVILNLRGSKSLKSLPSGIFNLEFLTKLDLSGCSKLKRLLEISS-GNINWLFLRE 185
             L + +   L+ +            LE +TKL ++G  K+  +  I    N+ +L L  
Sbjct: 19  ADLAEGIRAVLQKASVTD--VVTQEELESITKLVVAGE-KVASIQGIEYLTNLEYLNLNG 75

Query: 186 TAIEELPSSIERLLRLGHLDLSDCKRLKSLPSSLFKLKSLGVLNLGGCSNLQRLPECLGQ 245
             I ++   +  L++L +L +   K +  +  +L  L +L  L L    N+  +   L  
Sbjct: 76  NQITDIS-PLSNLVKLTNLYIGTNK-ITDIS-ALQNLTNLRELYLNED-NISDISP-LAN 130

Query: 246 LSSPIILNLAKTNVERIPESIIQLFVLRYLLLSY 279
           L+    LNL   +       +  +  L YL ++ 
Sbjct: 131 LTKMYSLNLGANHNLSDLSPLSNMTGLNYLTVTE 164

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 46.8 bits (112), Expect = 4e-06
 Identities = 27/153 (17%), Positives = 60/153 (39%), Gaps = 9/153 (5%)

Query: 128 HLNKLVILNLRGSKSLKSLPSGIFNLEFLTKLDLSGCSKLKRLLEISS-GNINWLFLRET 186
           +L KL  L +  +K +  + + + NL  L +L L+    +  +  +++   +  L L   
Sbjct: 86  NLVKLTNLYIGTNK-ITDISA-LQNLTNLRELYLNED-NISDISPLANLTKMYSLNLGAN 142

Query: 187 AIEELPSSIERLLRLGHLDLSDCKRLKSLPSSLFKLKSLGVLNLGGCSNLQRLPECLGQL 246
                 S +  +  L +L +++ K +K +   +  L  L  L+L     ++ +   L  L
Sbjct: 143 HNLSDLSPLSNMTGLNYLTVTESK-VKDVT-PIANLTDLYSLSLNYN-QIEDISP-LASL 198

Query: 247 SSPIILNLAKTNVERIPESIIQLFVLRYLLLSY 279
           +S          +  I   +  +  L  L +  
Sbjct: 199 TSLHYFTAYVNQITDIT-PVANMTRLNSLKIGN 230

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 39.8 bits (94), Expect = 7e-04
 Identities = 24/135 (17%), Positives = 55/135 (40%), Gaps = 7/135 (5%)

Query: 128 HLNKLVILNLRGSKSLKSLPSGIFNLEFLTKLDLSGCSKLKRLLEISS-GNINWLFLRET 186
           ++ +L  L +  +K +  L   + NL  LT L++    ++  +  +     +  L +   
Sbjct: 219 NMTRLNSLKIGNNK-ITDLS-PLANLSQLTWLEIGTN-QISDINAVKDLTKLKMLNVGSN 275

Query: 187 AIEELPSSIERLLRLGHLDLSDCKRLKSLPSSLFKLKSLGVLNLGGCSNLQRLPECLGQL 246
            I ++ S +  L +L  L L++ +        +  L +L  L L    ++  +   L  L
Sbjct: 276 QISDI-SVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQN-HITDIRP-LASL 332

Query: 247 SSPIILNLAKTNVER 261
           S     + A   +++
Sbjct: 333 SKMDSADFANQVIKK 347

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 47.4 bits (113), Expect = 3e-06
 Identities = 32/175 (18%), Positives = 62/175 (35%), Gaps = 22/175 (12%)

Query: 121 PNPTLMPHLNKLVILNLRGSKSLKSLPSGIF-NLEFLTKLDLSGCSKLKRLLEISSG--- 176
              +L  HL KL IL +    +   +    F  L FL +L++        L         
Sbjct: 140 GETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDAS----DLQSYEPKSLK 195

Query: 177 ---NINWLFLRETAIEELPSSI-ERLLRLGHLDLSD----CKRLKSLPSSLF----KLKS 224
              N++ L L       L     +    +  L+L D          L +       K  +
Sbjct: 196 SIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFT 255

Query: 225 LGVLNLGGCSNLQRLPECLGQLSSPIILNLAKTNVERIPESIIQ-LFVLRYLLLS 278
              + +    +L ++ + L Q+S  + L  ++  ++ +P+ I   L  L+ + L 
Sbjct: 256 FRNVKITD-ESLFQVMKLLNQISGLLELEFSRNQLKSVPDGIFDRLTSLQKIWLH 309

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 46.7 bits (111), Expect = 5e-06
 Identities = 50/162 (30%), Positives = 65/162 (40%), Gaps = 25/162 (15%)

Query: 140 SKSLKSLPSGIFNLEFLTKLDLSGCSKLKRLLEISSG------NINWLFLRETAIEELPS 193
           S SL S+PSG+   E +  LDLS      R+  IS+       N+  L L    I  +  
Sbjct: 40  SGSLNSIPSGLT--EAVKSLDLSNN----RITYISNSDLQRCVNLQALVLTSNGINTIEE 93

Query: 194 SI-ERLLRLGHLDLSDCKRLKSLPSSLF-KLKSLGVLNLGGCSNLQRLPEC-----LGQL 246
                L  L HLDLS    L +L SS F  L SL  LNL G    + L E      L +L
Sbjct: 94  DSFSSLGSLEHLDLSYN-YLSNLSSSWFKPLSSLTFLNLLGN-PYKTLGETSLFSHLTKL 151

Query: 247 SSPIILNLAKTNVERIPESIIQ-LFVLRYLLLSYSERIQSVS 287
               + N+      +I       L  L  L +  S  +QS  
Sbjct: 152 QILRVGNMDT--FTKIQRKDFAGLTFLEELEIDAS-DLQSYE 190

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 46.1 bits (110), Expect = 3e-06
 Identities = 24/154 (15%), Positives = 49/154 (31%), Gaps = 6/154 (3%)

Query: 127 PHLNKLVILNLRGSKSLKSLPSGIFNLEFLTKLDLSGCSKLKRLLEISS-GNINWLFLRE 185
                 +   L  S +     +    +  LT + L+    +  L  I    NI  L +  
Sbjct: 20  STFKAYLNGLLGQSSTANITEA---QMNSLTYITLANI-NVTDLTGIEYAHNIKDLTINN 75

Query: 186 TAIEELPSSIERLLRLGHLDLSDCKRLKSLPSSLFKLKSLGVLNLGGCSNLQRLPECLGQ 245
                  + I  L  L  L +           +L  L SL +L++   ++   +   +  
Sbjct: 76  IHATNY-NPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINT 134

Query: 246 LSSPIILNLAKTNVERIPESIIQLFVLRYLLLSY 279
           L     ++L+          +  L  L+ L + +
Sbjct: 135 LPKVNSIDLSYNGAITDIMPLKTLPELKSLNIQF 168

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A Length = 272

 Score = 46.2 bits (110), Expect = 5e-06
 Identities = 39/124 (31%), Positives = 59/124 (47%), Gaps = 18/124 (14%)

Query: 128 HLNKLVILNLRGSKSLKSLPSGIFN-LEFLTKLDLSGCSKLKRLLEISSG------NINW 180
            L  L  L L     L+SLP+G+F+ L  L +L L       +L  +  G      N+ +
Sbjct: 83  ELTNLTYLILT-GNQLQSLPNGVFDKLTNLKELVLVE----NQLQSLPDGVFDKLTNLTY 137

Query: 181 LFLRETAIEELPSSI-ERLLRLGHLDLSDCKRLKSLPSSLF-KLKSLGVLNLGGCSN-LQ 237
           L L    ++ LP  + ++L  L  LDL    +L+SLP  +F KL  L  L L    N L+
Sbjct: 138 LNLAHNQLQSLPKGVFDKLTNLTELDL-SYNQLQSLPEGVFDKLTQLKDLRLY--QNQLK 194

Query: 238 RLPE 241
            +P+
Sbjct: 195 SVPD 198

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri} Length = 208

 Score = 45.0 bits (107), Expect = 9e-06
 Identities = 31/105 (29%), Positives = 53/105 (50%), Gaps = 6/105 (5%)

Query: 140 SKSLKSLPSGIFNLEFLTKLDLSGCSKLKRLLEISSGNINWLFLRETAIEELPSSI-ERL 198
           S+   S+P+GI        L+ +    L   +     ++  L+L    ++ LP+ +  +L
Sbjct: 16  SQGRTSVPTGIPAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKL 75

Query: 199 LRLGHLDLSDCKRLKSLPSSLF-KLKSLGVLNLGGCSN-LQRLPE 241
             L +L+LS   +L+SLP+ +F KL  L  L L   +N LQ LP+
Sbjct: 76  TSLTYLNLS-TNQLQSLPNGVFDKLTQLKELALN--TNQLQSLPD 117

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 45.3 bits (108), Expect = 1e-05
 Identities = 37/159 (23%), Positives = 56/159 (35%), Gaps = 20/159 (12%)

Query: 140 SKSLKSLPSGIFNLEFLTKLDLSGCSKLKRLLEISSG------NINWLFLRETAIEELPS 193
             +   +P  +        LDLS       L  + S        +  L L    I+ +  
Sbjct: 16  ELNFYKIPDNLPF--STKNLDLSF----NPLRHLGSYSFFSFPELQVLDLSRCEIQTIED 69

Query: 194 SI-ERLLRLGHLDLSDCKRLKSLPSSLF-KLKSLGVLNLGGCSNLQRLPECL-GQLSSPI 250
              + L  L  L L+    ++SL    F  L SL  L      NL  L     G L +  
Sbjct: 70  GAYQSLSHLSTLILTG-NPIQSLALGAFSGLSSLQKLVAVET-NLASLENFPIGHLKTLK 127

Query: 251 ILNLAKTNVERIPESII--QLFVLRYLLLSYSERIQSVS 287
            LN+A   ++          L  L +L LS + +IQS+ 
Sbjct: 128 ELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSN-KIQSIY 165

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 43.4 bits (103), Expect = 4e-05
 Identities = 36/161 (22%), Positives = 51/161 (31%), Gaps = 37/161 (22%)

Query: 128 HLNKLVILNLRGSKSLKSLPSGIF-NLEFLTKLDLSGCSKLKRLLEISSG---NINWLFL 183
            L+ L  L L G+  ++SL  G F  L  L KL       L  L     G    +  L +
Sbjct: 74  SLSHLSTLILTGNP-IQSLALGAFSGLSSLQKLVAVET-NLASLENFPIGHLKTLKELNV 131

Query: 184 RETAIEELPSS--IERLLRLGHLDLSDCK---------------------------RLKS 214
               I+          L  L HLDLS  K                            +  
Sbjct: 132 AHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNF 191

Query: 215 LPSSLFKLKSLGVLNLGGCSNLQRLPE-CLGQLSSPIILNL 254
           +    FK   L  L L     L+ +P+    +L+S   + L
Sbjct: 192 IQPGAFKEIRLKELALDTN-QLKSVPDGIFDRLTSLQKIWL 231

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 45.3 bits (108), Expect = 1e-05
 Identities = 31/171 (18%), Positives = 69/171 (40%), Gaps = 25/171 (14%)

Query: 128 HLNKLVILNLRGSKSLKSLPSGIFNLEFLTKLDLSGCSKLKRLLEISS-GNINWLFLRET 186
            L+++  L       +KS+  G+  L  LT+++ S   +L  +  + +   +  + +   
Sbjct: 44  DLDQVTTLQADRLG-IKSI-DGVEYLNNLTQINFSNN-QLTDITPLKNLTKLVDILMNNN 100

Query: 187 AIEELPSSIERLLRLGHLDLSDCKRLKSLP--SSLFKLKSL--------GVLNLGGCSNL 236
            I ++   +  L  L  L L + + +  +    +L  L  L         +  L G ++L
Sbjct: 101 QIADIT-PLANLTNLTGLTLFNNQ-ITDIDPLKNLTNLNRLELSSNTISDISALSGLTSL 158

Query: 237 QRL--------PECLGQLSSPIILNLAKTNVERIPESIIQLFVLRYLLLSY 279
           Q+L         + L  L++   L+++   V  I   + +L  L  L+ + 
Sbjct: 159 QQLSFGNQVTDLKPLANLTTLERLDISSNKVSDIS-VLAKLTNLESLIATN 208

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 43.4 bits (103), Expect = 6e-05
 Identities = 35/153 (22%), Positives = 67/153 (43%), Gaps = 10/153 (6%)

Query: 128 HLNKLVILNLRGSKSLKSLPSGIFNLEFLTKLDLSGCSKLKRLLEISS-GNINWLFLRET 186
            L  L  L+L G++ LK + + + +L  LT LDL+   ++  L  +S    +  L L   
Sbjct: 219 ILTNLDELSLNGNQ-LKDIGT-LASLTNLTDLDLANN-QISNLAPLSGLTKLTELKLGAN 275

Query: 187 AIEELPSSIERLLRLGHLDLSDCKRLKSLPSSLFKLKSLGVLNLGGCSNLQRLPECLGQL 246
            I  + S +  L  L +L+L++ + L+ +   +  LK+L  L L    N+  +   +  L
Sbjct: 276 QISNI-SPLAGLTALTNLELNENQ-LEDIS-PISNLKNLTYLTLYFN-NISDISP-VSSL 330

Query: 247 SSPIILNLAKTNVERIPESIIQLFVLRYLLLSY 279
           +    L      V  +   +  L  + +L   +
Sbjct: 331 TKLQRLFFYNNKVSDVSS-LANLTNINWLSAGH 362

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 43.1 bits (102), Expect = 4e-05
 Identities = 28/110 (25%), Positives = 42/110 (38%), Gaps = 16/110 (14%)

Query: 140 SKSLKSLPSGIFNLEFLTKLDLSGCSKLKRLLEISSG------NINWLFLRETAIEELPS 193
            K L  +P+ +   E +T++ L        +  I  G       +  + L    I EL  
Sbjct: 20  GKGLTEIPTNLP--ETITEIRLEQ----NTIKVIPPGAFSPYKKLRRIDLSNNQISELAP 73

Query: 194 SI-ERLLRLGHLDLSDCKRLKSLPSSLF-KLKSLGVLNLGGCSNLQRLPE 241
              + L  L  L L   K +  LP SLF  L SL +L L   + +  L  
Sbjct: 74  DAFQGLRSLNSLVLYGNK-ITELPKSLFEGLFSLQLLLLNA-NKINCLRV 121

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 41.9 bits (99), Expect = 8e-05
 Identities = 17/108 (15%), Positives = 40/108 (37%), Gaps = 11/108 (10%)

Query: 140 SKSLKSLPSGIFNLEFLTKLDLSGCSKLKRLLEISS----GNINWLFLRETAIEELPSSI 195
           ++ L  +P  I   ++  +L L+  ++   L           +  +      I ++    
Sbjct: 20  NQKLNKIPEHIP--QYTAELRLNN-NEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGA 76

Query: 196 -ERLLRLGHLDLSDCKRLKSLPSSLF-KLKSLGVLNLGGCSNLQRLPE 241
            E    +  + L+   RL+++   +F  L+SL  L L     +  +  
Sbjct: 77  FEGASGVNEILLTS-NRLENVQHKMFKGLESLKTLMLRSN-RITCVGN 122

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 43.3 bits (102), Expect = 9e-05
 Identities = 33/166 (19%), Positives = 59/166 (35%), Gaps = 30/166 (18%)

Query: 122 NPTLMPHLNKLVILNLRGSKSLKSLPSGIF-NLEFLTKLDLSGCSKLKRLLEISSGNINW 180
             +  P L +L +L L    +  ++    F NL  L  LDL       ++  +       
Sbjct: 40  TASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSS----KIYFLH------ 89

Query: 181 LFLRETAIEELPSSIERLLRLGHLDLSDCK-RLKSLPSSLFK-LKSLGVLNLGGCSNLQR 238
                      P + + L  L  L L  C      L    F+ LK+L  L+L     ++ 
Sbjct: 90  -----------PDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKN-QIRS 137

Query: 239 LPEC--LGQLSSPIILNLAKTNVERIPESI---IQLFVLRYLLLSY 279
           L      G+L+S   ++ +   +  + E     +Q   L +  L+ 
Sbjct: 138 LYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAA 183

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 41.9 bits (99), Expect = 1e-04
 Identities = 42/193 (21%), Positives = 73/193 (37%), Gaps = 14/193 (7%)

Query: 80  EKLVFLKVPYSDIEQLWNGEKHYSNLNQIINATCNKLIAKTPNPTLMPHLNKLVILNLRG 139
              V   +    +  L   +K  S + Q  N   + +     +   M     L  L+L  
Sbjct: 19  ANAVKQNLGKQSVTDL-VSQKELSGV-QNFNGDNSNIQ----SLAGMQFFTNLKELHLSH 72

Query: 140 SKSLKSLPSGIFNLEFLTKLDLSGCSKLKRLLEISSGNINWLFLRETAIEELPSSIERLL 199
           ++ +  L S + +L  L +L ++   +LK L  I S  ++ LFL    + +   S+  L 
Sbjct: 73  NQ-ISDL-SPLKDLTKLEELSVNRN-RLKNLNGIPSACLSRLFLDNNELRDT-DSLIHLK 128

Query: 200 RLGHLDLSDCKRLKSLPSSLFKLKSLGVLNLGGCSNLQRLPECLGQLSSPIILNLAKTNV 259
            L  L + + K LKS+   L  L  L VL+L G   +      L +L     ++L     
Sbjct: 129 NLEILSIRNNK-LKSI-VMLGFLSKLEVLDLHGN-EITNTGG-LTRLKKVNWIDLTGQKC 184

Query: 260 ERIPESIIQLFVL 272
              P        +
Sbjct: 185 VNEPVKYQPELYI 197

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri} Length = 177

 Score = 40.3 bits (95), Expect = 2e-04
 Identities = 36/112 (32%), Positives = 53/112 (47%), Gaps = 20/112 (17%)

Query: 140 SKSLKSLPSGIF----NLEF----LTKLDLSGCSKLKRLLEISSGNINWLFLRETAIEEL 191
           SK L S+P+GI      LE     L  L      KL +L          L L +  I+ L
Sbjct: 16  SKGLTSVPTGIPSSATRLELESNKLQSLPHGVFDKLTQL--------TKLSLSQNQIQSL 67

Query: 192 PSSI-ERLLRLGHLDLSDCKRLKSLPSSLF-KLKSLGVLNLGGCSNLQRLPE 241
           P  + ++L +L  L L + K L+SLP+ +F KL  L  L L   + L+ +P+
Sbjct: 68  PDGVFDKLTKLTILYLHENK-LQSLPNGVFDKLTQLKELALDT-NQLKSVPD 117

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 41.2 bits (97), Expect = 3e-04
 Identities = 44/153 (28%), Positives = 72/153 (47%), Gaps = 10/153 (6%)

Query: 128 HLNKLVILNLRGSKSLKSLPSGIFNLEFLTKLDLSGCSKLKRLLEISS-GNINWLFLRET 186
            LN +  +    S  +KS+  GI  L  +TKL L+G  KL  +  +++  N+ WLFL E 
Sbjct: 44  ELNSIDQIIANNSD-IKSV-QGIQYLPNVTKLFLNGN-KLTDIKPLANLKNLGWLFLDEN 100

Query: 187 AIEELPSSIERLLRLGHLDLSDCKRLKSLPSSLFKLKSLGVLNLGGCSNLQRLPECLGQL 246
            +++L SS++ L +L  L L     +  + + L  L  L  L LG    +  +   L +L
Sbjct: 101 KVKDL-SSLKDLKKLKSLSLEHN-GISDI-NGLVHLPQLESLYLGNN-KITDI-TVLSRL 155

Query: 247 SSPIILNLAKTNVERIPESIIQLFVLRYLLLSY 279
           +    L+L    +  I   +  L  L+ L LS 
Sbjct: 156 TKLDTLSLEDNQISDI-VPLAGLTKLQNLYLSK 187

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens} Length = 193

 Score = 40.0 bits (94), Expect = 3e-04
 Identities = 32/106 (30%), Positives = 53/106 (50%), Gaps = 9/106 (8%)

Query: 140 SKSLKSLPSGIFNLEFLTKLDLSGCSKLKRLLEISSG--NINWLFLRETAIEELPSSI-E 196
           +K LK LP GI     +T+L L G ++   + +  S   ++  + L    I  L +    
Sbjct: 19  NKGLKVLPKGIP--RDVTELYLDG-NQFTLVPKELSNYKHLTLIDLSNNRISTLSNQSFS 75

Query: 197 RLLRLGHLDLSDCKRLKSLPSSLF-KLKSLGVLNLGGCSNLQRLPE 241
            + +L  L LS   RL+ +P   F  LKSL +L+L G +++  +PE
Sbjct: 76  NMTQLLTLILSY-NRLRCIPPRTFDGLKSLRLLSLHG-NDISVVPE 119

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 40.4 bits (95), Expect = 4e-04
 Identities = 33/153 (21%), Positives = 64/153 (41%), Gaps = 10/153 (6%)

Query: 128 HLNKLVILNLRGSKSLKSLPSGIFNLEFLTKLDLSGCSKLKRLLEISS-GNINWLFLRET 186
           +L K+  L L G+  LK++ S I  L+ +  LDL+   ++  +  ++   N+  L+L   
Sbjct: 83  NLTKITELELSGNP-LKNV-SAIAGLQSIKTLDLTST-QITDVTPLAGLSNLQVLYLDLN 139

Query: 187 AIEELPSSIERLLRLGHLDLSDCKRLKSLPSSLFKLKSLGVLNLGGCSNLQRLPECLGQL 246
            I  + S +  L  L +L + + + +  L + L  L  L  L      N       L  L
Sbjct: 140 QITNI-SPLAGLTNLQYLSIGNAQ-VSDL-TPLANLSKLTTLKADD--NKISDISPLASL 194

Query: 247 SSPIILNLAKTNVERIPESIIQLFVLRYLLLSY 279
            + I ++L    +  +   +     L  + L+ 
Sbjct: 195 PNLIEVHLKNNQISDV-SPLANTSNLFIVTLTN 226

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* Length = 592

 Score = 40.7 bits (95), Expect = 5e-04
 Identities = 35/187 (18%), Positives = 64/187 (34%), Gaps = 23/187 (12%)

Query: 70  LKSLPSNLSAEKLVFLKVPYSDIEQLWNGEKHYSNLNQIINATCNKLIAKTPNPTLMPHL 129
           L+++  N     LV +KV   +I +L    K  +NL +    + N+ I        +   
Sbjct: 212 LETIARNCR--SLVSVKVGDFEILELVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFP 269

Query: 130 NKLVILNLRGSKSLKSLPSGIFNLEFLTKLDLSGCSKLKRLLEISSGNINWLFLRETAIE 189
            KL  L L        +P        + KLDL                           E
Sbjct: 270 RKLCRLGLSYM-GPNEMPILFPFAAQIRKLDLLYALLE--------------------TE 308

Query: 190 ELPSSIERLLRLGHLDLSDCKRLKSLPSSLFKLKSLGVLNLGGCSNLQRLPECLGQLSSP 249
           +  + I++   L  L+  +    + L       K L  L +   ++ Q + +  G +S  
Sbjct: 309 DHCTLIQKCPNLEVLETRNVIGDRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQR 368

Query: 250 IILNLAK 256
            ++ LA+
Sbjct: 369 GLIALAQ 375

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7 Length = 192

 Score = 39.2 bits (92), Expect = 7e-04
 Identities = 22/113 (19%), Positives = 40/113 (35%), Gaps = 21/113 (18%)

Query: 140 SKSLKSLPSGI--------FNLEFLTKLDLSGC-SKLKRLLEISSGNINWLFLRETAIEE 190
            + LK +P  I         N   L ++   G   +L  L          L L+   +  
Sbjct: 17  GRGLKEIPRDIPLHTTELLLNDNELGRISSDGLFGRLPHL--------VKLELKRNQLTG 68

Query: 191 LPSSI-ERLLRLGHLDLSDCKRLKSLPSSLF-KLKSLGVLNLGGCSNLQRLPE 241
           +  +  E    +  L L + K +K + + +F  L  L  LNL   + +  +  
Sbjct: 69  IEPNAFEGASHIQELQLGENK-IKEISNKMFLGLHQLKTLNLYD-NQISCVMP 119

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A Length = 176

 Score = 38.7 bits (90), Expect = 9e-04
 Identities = 15/106 (14%), Positives = 36/106 (33%), Gaps = 11/106 (10%)

Query: 141 KSLKSLPSGIFNLEFLTKLDLSGCSKLKRLLEISSG--NINWLFLRET------AIEELP 192
           K    LP+G  +   +  +D +    +    +   G   +  + L +        +E L 
Sbjct: 48  KDYNHLPTGPLDKYKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLS 107

Query: 193 SSIERLLRLGHLDLSDCKRL--KSLPSSLFKLKSLGVLNLGGCSNL 236
                   +  +++  C  +  K +  +L   ++L  L L     +
Sbjct: 108 QLENLQKSMLEMEIISCGNVTDKGI-IALHHFRNLKYLFLSDLPGV 152

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	321
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	99.96
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	99.96
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	99.96
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	99.96
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	99.96
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	99.96
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	99.96
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	99.96
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	99.96
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	99.95
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	99.95
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	99.95
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	99.95
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	99.95
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	99.95
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	99.95
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	99.95
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	99.95
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	99.95
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	99.95
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	99.95
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	99.94
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	99.94
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	99.94
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	99.94
1o6v_A	466	Internalin A; bacterial infection, extracellular r	99.94
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	99.94
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	99.94
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	99.94
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	99.94
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	99.94
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	99.93
1o6v_A	466	Internalin A; bacterial infection, extracellular r	99.93
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	99.93
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	99.93
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	99.93
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	99.93
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	99.93
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	99.93
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	99.93
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	99.93
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	99.93
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	99.93
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	99.93
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	99.92
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	99.92
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	99.92
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	99.92
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	99.92
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	99.92
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	99.92
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	99.91
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	99.91
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	99.91
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	99.9
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	99.9
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	99.9
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	99.89
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	99.89
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	99.89
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	99.89
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	99.89
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	99.88
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	99.88
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	99.88
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	99.87
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	99.87
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	99.87
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	99.87
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	99.86
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	99.86
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	99.86
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	99.85
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	99.85
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	99.84
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	99.84
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	99.84
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	99.84
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	99.83
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	99.83
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	99.83
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	99.83
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	99.82
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	99.82
3m19_A	251	Variable lymphocyte receptor A diversity region; a	99.81
3m19_A	251	Variable lymphocyte receptor A diversity region; a	99.8
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	99.8
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	99.79
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	99.79
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	99.78
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	99.78
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	99.77
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	99.77
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	99.76
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	99.75
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	99.74
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	99.74
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	99.73
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	99.73
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	99.71
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	99.7
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	99.7
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	99.7
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	99.69
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	99.68
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	99.68
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	99.68
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	99.68
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	99.68
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	99.67
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	99.67
3e6j_A	229	Variable lymphocyte receptor diversity region; var	99.65
3e6j_A	229	Variable lymphocyte receptor diversity region; var	99.65
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	99.65
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	99.65
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	99.64
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.61
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.6
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	99.6
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.58
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	99.58
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	99.58
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	99.56
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	99.55
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	99.54
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.54
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	99.52
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	99.52
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	99.5
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	99.49
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	99.46
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	99.42
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	99.39
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	99.39
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	99.38
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	99.37
4fdw_A	401	Leucine rich hypothetical protein; putative cell s	99.33
4fdw_A	401	Leucine rich hypothetical protein; putative cell s	99.33
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	99.3
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	99.29
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	99.26
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	99.25
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	99.22
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	99.15
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	99.0
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	98.95
4fs7_A	394	Uncharacterized protein; leucine-rich repeats, pro	98.82
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	98.81
4fs7_A	394	Uncharacterized protein; leucine-rich repeats, pro	98.81
4h09_A	379	Hypothetical leucine rich repeat protein; two LRR_	98.64
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	98.59
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	98.58
4gt6_A	394	Cell surface protein; leucine rich repeats, putati	98.53
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	98.48
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	98.38
4gt6_A	394	Cell surface protein; leucine rich repeats, putati	98.27
4h09_A	379	Hypothetical leucine rich repeat protein; two LRR_	98.25
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	98.14
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	98.04
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	97.93
1pgv_A	197	TMD-1, tropomodulin TMD-1; structural genomics, PS	97.56
1pgv_A	197	TMD-1, tropomodulin TMD-1; structural genomics, PS	97.07
3rfe_A	130	Platelet glycoprotein IB beta chain; platelet surf	96.21
3rfe_A	130	Platelet glycoprotein IB beta chain; platelet surf	95.97

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=99.96  E-value=6.2e-29  Score=230.12  Aligned_cols=286  Identities=17%  Similarity=0.160  Sum_probs=223.7

Q ss_pred             eecCchhhhccChhhhcCCCCceEEEEeecCCCCccccceeccCCCCc-CcccEEEecCCCCCCC-CCcC-CcCceeEEe
Q 037308           10 LDMSTVKEIRLNLSTFTKMPKLRFLKFYSSSFNGENKCKVSYLQDPRF-AEVKYFHWHGYPLKSL-PSNL-SAEKLVFLK   86 (321)
Q Consensus        10 l~~~~~~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~l~~-~~L~~l~l~~~~l~~~-~~~~-~l~~L~~L~   86 (321)
                      ||++++......+..++.+++|++|++++|.+.+.     ..+..+.. ++|++|++++|.+..+ |..+ ++++|++|+
T Consensus        35 L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~-----i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~  109 (455)
T 3v47_A           35 VDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLV-----IRNNTFRGLSSLIILKLDYNQFLQLETGAFNGLANLEVLT  109 (455)
T ss_dssp             EECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCE-----ECTTTTTTCTTCCEEECTTCTTCEECTTTTTTCTTCCEEE
T ss_pred             EEecCCccCcCChhHhccCccccEEECcCCcccce-----ECcccccccccCCEEeCCCCccCccChhhccCcccCCEEe
Confidence            45566655666678899999999999999874322     12344565 9999999999998776 4445 799999999


Q ss_pred             ccCCccccc-cc--CCCCCCChHhHHhhccccccccCCCCCCCCCCCCccEEEccCCCCCcccCccccCc----------
Q 037308           87 VPYSDIEQL-WN--GEKHYSNLNQIINATCNKLIAKTPNPTLMPHLNKLVILNLRGSKSLKSLPSGIFNL----------  153 (321)
Q Consensus        87 l~~~~l~~~-~~--~~~~l~~L~~~l~l~~~~l~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~l~~l----------  153 (321)
                      +++|.++.. +.  .+..+++|+. ++++.|.+.+..+. ..+..+++|++|++++|.+.+..|..+..+          
T Consensus       110 L~~n~l~~~~~~~~~~~~l~~L~~-L~L~~n~l~~~~~~-~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~~~L~~L~l  187 (455)
T 3v47_A          110 LTQCNLDGAVLSGNFFKPLTSLEM-LVLRDNNIKKIQPA-SFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRL  187 (455)
T ss_dssp             CTTSCCBTHHHHSSTTTTCTTCCE-EECCSSBCCSCCCC-GGGGGCTTCCEEECTTCCBSCCCTTTSGGGTTCEEEEEEC
T ss_pred             CCCCCCCccccCcccccCcccCCE-EECCCCccCccCcc-cccCCCCcccEEeCCCCcccccChhhhhcccccccccccc
Confidence            999999762 23  3778899999 99999999844343 127889999999999998766655544433          


Q ss_pred             ------------------------ccCcEEecCCCCCccccccc------------------------------------
Q 037308          154 ------------------------EFLTKLDLSGCSKLKRLLEI------------------------------------  173 (321)
Q Consensus       154 ------------------------~~L~~L~l~~~~~~~~~~~~------------------------------------  173 (321)
                                              ++|+.|++++|...+..+..                                    
T Consensus       188 ~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~  267 (455)
T 3v47_A          188 SSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNF  267 (455)
T ss_dssp             TTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEECTTCTTTSCCTTCCSSCCCCTT
T ss_pred             ccCcccccchhhccccccccccccceeeeEecCCCcccccchhhhhccccccceeeEeeccccccccccchhhhccCccc
Confidence                                    67888888887543322111                                    


Q ss_pred             -----ccCCccEEEecccccccc-ChhhhccCCCCeEecccCcccccccccccCCCCCCEEEecCCCCCCccccccCCCC
Q 037308          174 -----SSGNINWLFLRETAIEEL-PSSIERLLRLGHLDLSDCKRLKSLPSSLFKLKSLGVLNLGGCSNLQRLPECLGQLS  247 (321)
Q Consensus       174 -----~~~~L~~L~l~~~~i~~l-~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~  247 (321)
                           ..++|+.|++++|.+.++ |..+..+++|++|++++|.+.+..+..++.+++|+.|++++|.+.+..+..+..++
T Consensus       268 ~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~  347 (455)
T 3v47_A          268 TFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLD  347 (455)
T ss_dssp             TTGGGTTSCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGGTTCT
T ss_pred             ccccccccCceEEEecCccccccchhhcccCCCCCEEECCCCcccccChhHhcCcccCCEEECCCCccCCcChhHhcCcc
Confidence                 125788999999998885 56688999999999999998888888899999999999999998877788899999


Q ss_pred             CCcEEEcccCCCccc-chhhhccCCcCEEeccCCCCccccc-----CccccccccccccCcc
Q 037308          248 SPIILNLAKTNVERI-PESIIQLFVLRYLLLSYSERIQSVS-----LPLARGILEDTQRSPH  303 (321)
Q Consensus       248 ~L~~L~l~~n~l~~l-~~~l~~l~~L~~L~l~~n~~l~~~~-----~~~~l~~l~~~~~~~~  303 (321)
                      +|+.|++++|+++.+ |..+..+++|++|++++| .++.++     ..++++.|++.+..-.
T Consensus       348 ~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~l~~N~l~  408 (455)
T 3v47_A          348 KLEVLDLSYNHIRALGDQSFLGLPNLKELALDTN-QLKSVPDGIFDRLTSLQKIWLHTNPWD  408 (455)
T ss_dssp             TCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS-CCSCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred             cCCEEECCCCcccccChhhccccccccEEECCCC-ccccCCHhHhccCCcccEEEccCCCcc
Confidence            999999999999966 578899999999999999 788877     2357788888774433

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=99.96  E-value=2.1e-28  Score=222.32  Aligned_cols=275  Identities=13%  Similarity=0.108  Sum_probs=215.5

Q ss_pred             cCchhhhccChhhhcCCCCceEEEEeecCCCCccccceeccCCCCc-CcccEEEecCCCCCCCCCc-C-CcCceeEEecc
Q 037308           12 MSTVKEIRLNLSTFTKMPKLRFLKFYSSSFNGENKCKVSYLQDPRF-AEVKYFHWHGYPLKSLPSN-L-SAEKLVFLKVP   88 (321)
Q Consensus        12 ~~~~~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~l~~-~~L~~l~l~~~~l~~~~~~-~-~l~~L~~L~l~   88 (321)
                      ++++....++...+..+++|++|++++|.++      ...+..+.. ++|++|++++|.+..++.. + .+++|++|+++
T Consensus        52 l~~~~l~~l~~~~~~~l~~L~~L~L~~n~i~------~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~  125 (390)
T 3o6n_A           52 FKNSTMRKLPAALLDSFRQVELLNLNDLQIE------EIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLE  125 (390)
T ss_dssp             EESCEESEECTHHHHHCCCCSEEECTTSCCC------EECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred             ecCCchhhCChhHhcccccCcEEECCCCccc------ccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEEECC
Confidence            3444445566677888999999999988744      223345666 8999999999998887655 3 79999999999


Q ss_pred             CCcccccccCC-CCCCChHhHHhhccccccccCCCCCCCCCCCCccEEEccCCCCCcccCccccCcccCcEEecCCCCC-
Q 037308           89 YSDIEQLWNGE-KHYSNLNQIINATCNKLIAKTPNPTLMPHLNKLVILNLRGSKSLKSLPSGIFNLEFLTKLDLSGCSK-  166 (321)
Q Consensus        89 ~~~l~~~~~~~-~~l~~L~~~l~l~~~~l~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~l~~l~~L~~L~l~~~~~-  166 (321)
                      +|.++.++... ..+++|+. ++++.|.+.+..+.  .+..+++|++|++++|.+... +  ++.+++|+.++++.|.. 
T Consensus       126 ~n~l~~l~~~~~~~l~~L~~-L~L~~n~l~~~~~~--~~~~l~~L~~L~l~~n~l~~~-~--~~~l~~L~~L~l~~n~l~  199 (390)
T 3o6n_A          126 RNDLSSLPRGIFHNTPKLTT-LSMSNNNLERIEDD--TFQATTSLQNLQLSSNRLTHV-D--LSLIPSLFHANVSYNLLS  199 (390)
T ss_dssp             SSCCCCCCTTTTTTCTTCCE-EECCSSCCCBCCTT--TTSSCTTCCEEECCSSCCSBC-C--GGGCTTCSEEECCSSCCS
T ss_pred             CCccCcCCHHHhcCCCCCcE-EECCCCccCccChh--hccCCCCCCEEECCCCcCCcc-c--cccccccceeeccccccc
Confidence            99999887764 78899999 99999999833343  688899999999999885443 2  33445555544444321 


Q ss_pred             -----------------cccccccccCCccEEEeccccccccChhhhccCCCCeEecccCcccccccccccCCCCCCEEE
Q 037308          167 -----------------LKRLLEISSGNINWLFLRETAIEELPSSIERLLRLGHLDLSDCKRLKSLPSSLFKLKSLGVLN  229 (321)
Q Consensus       167 -----------------~~~~~~~~~~~L~~L~l~~~~i~~l~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~  229 (321)
                                       +..++...+++|+.|++++|.+++.+ .+..+++|++|++++|.+.+..|..+..+++|+.|+
T Consensus       200 ~~~~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~l~~~~-~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~  278 (390)
T 3o6n_A          200 TLAIPIAVEELDASHNSINVVRGPVNVELTILKLQHNNLTDTA-WLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLY  278 (390)
T ss_dssp             EEECCSSCSEEECCSSCCCEEECCCCSSCCEEECCSSCCCCCG-GGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEE
T ss_pred             ccCCCCcceEEECCCCeeeeccccccccccEEECCCCCCcccH-HHcCCCCccEEECCCCcCCCcChhHccccccCCEEE
Confidence                             22233334568899999999888874 588899999999999998888888899999999999


Q ss_pred             ecCCCCCCccccccCCCCCCcEEEcccCCCcccchhhhccCCcCEEeccCCCCccccc--CccccccccccccC
Q 037308          230 LGGCSNLQRLPECLGQLSSPIILNLAKTNVERIPESIIQLFVLRYLLLSYSERIQSVS--LPLARGILEDTQRS  301 (321)
Q Consensus       230 l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~l~~~l~~l~~L~~L~l~~n~~l~~~~--~~~~l~~l~~~~~~  301 (321)
                      +++|.+.+ ++..+..+++|+.|++++|+++.+|..+..+++|++|++++| .++.++  ..++++.|++.+..
T Consensus       279 L~~n~l~~-~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~l~~L~~L~L~~N-~i~~~~~~~~~~L~~L~l~~N~  350 (390)
T 3o6n_A          279 ISNNRLVA-LNLYGQPIPTLKVLDLSHNHLLHVERNQPQFDRLENLYLDHN-SIVTLKLSTHHTLKNLTLSHND  350 (390)
T ss_dssp             CCSSCCCE-EECSSSCCTTCCEEECCSSCCCCCGGGHHHHTTCSEEECCSS-CCCCCCCCTTCCCSEEECCSSC
T ss_pred             CCCCcCcc-cCcccCCCCCCCEEECCCCcceecCccccccCcCCEEECCCC-ccceeCchhhccCCEEEcCCCC
Confidence            99987654 566677899999999999999999988999999999999999 788887  56788888887754

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=99.96  E-value=3.1e-29  Score=246.51  Aligned_cols=231  Identities=23%  Similarity=0.260  Sum_probs=163.8

Q ss_pred             CCCc-CcccEEEecCCCCC-CCCCcC-CcCceeEEeccCCccc-ccccCCCCCCChHhHHhhccccccccCCCCCCCCCC
Q 037308           54 DPRF-AEVKYFHWHGYPLK-SLPSNL-SAEKLVFLKVPYSDIE-QLWNGEKHYSNLNQIINATCNKLIAKTPNPTLMPHL  129 (321)
Q Consensus        54 ~l~~-~~L~~l~l~~~~l~-~~~~~~-~l~~L~~L~l~~~~l~-~~~~~~~~l~~L~~~l~l~~~~l~~~~~~~~~~~~l  129 (321)
                      .+.. ++|+.|++++|.+. .+|..+ .+++|++|++++|.+. .++..+..+++|+. ++++.|.+.+.+|.  .+..+
T Consensus       413 ~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~-L~L~~N~l~~~~p~--~l~~l  489 (768)
T 3rgz_A          413 TLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLET-LILDFNDLTGEIPS--GLSNC  489 (768)
T ss_dssp             GGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCE-EECCSSCCCSCCCG--GGGGC
T ss_pred             HHhcCCCCCEEECcCCcccCcccHHHhcCCCCCEEECCCCcccCcCCHHHcCCCCceE-EEecCCcccCcCCH--HHhcC
Confidence            3444 66666776666654 344444 5666777777776665 34455566666666 77777777655655  66677


Q ss_pred             CCccEEEccCCCCCcccCccccCcccCcEEecCCCCCccccccc--ccCCccEEEeccccccc-cChh------------
Q 037308          130 NKLVILNLRGSKSLKSLPSGIFNLEFLTKLDLSGCSKLKRLLEI--SSGNINWLFLRETAIEE-LPSS------------  194 (321)
Q Consensus       130 ~~L~~L~l~~n~~~~~~p~~l~~l~~L~~L~l~~~~~~~~~~~~--~~~~L~~L~l~~~~i~~-l~~~------------  194 (321)
                      ++|++|++++|.+.+.+|..++.+++|+.|++++|...+.+|..  .+++|++|++++|.+.+ +|..            
T Consensus       490 ~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~  569 (768)
T 3rgz_A          490 TNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANF  569 (768)
T ss_dssp             TTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECCGGGGGCTTCCEEECCSSEEESBCCGGGGTTTTCBCCST
T ss_pred             CCCCEEEccCCccCCcCChHHhcCCCCCEEECCCCcccCcCCHHHcCCCCCCEEECCCCccCCcCChHHhcccchhhhhc
Confidence            77777777777766666766777777777777776655555543  46667777777776652 4432            


Q ss_pred             ----------------------------------------------------------hhccCCCCeEecccCccccccc
Q 037308          195 ----------------------------------------------------------IERLLRLGHLDLSDCKRLKSLP  216 (321)
Q Consensus       195 ----------------------------------------------------------~~~l~~L~~L~l~~n~~~~~~~  216 (321)
                                                                                +..+++|+.|++++|.+.+.+|
T Consensus       570 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~N~l~g~ip  649 (768)
T 3rgz_A          570 IAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIP  649 (768)
T ss_dssp             TCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSBCCCEEECCSSCCBSCCC
T ss_pred             cccccccccccccccccccccccccccccccchhhhccccccccccccceecccCchhhhccccccEEECcCCcccccCC
Confidence                                                                      2234567888888888888888


Q ss_pred             ccccCCCCCCEEEecCCCCCCccccccCCCCCCcEEEcccCCCc-ccchhhhccCCcCEEeccCCCCccccc
Q 037308          217 SSLFKLKSLGVLNLGGCSNLQRLPECLGQLSSPIILNLAKTNVE-RIPESIIQLFVLRYLLLSYSERIQSVS  287 (321)
Q Consensus       217 ~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~-~l~~~l~~l~~L~~L~l~~n~~l~~~~  287 (321)
                      ..++.+++|+.|++++|.+.+.+|..++.+++|+.||+++|+++ .+|..+..++.|++|++++|+.-+.+|
T Consensus       650 ~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~ls~N~l~g~iP  721 (768)
T 3rgz_A          650 KEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIP  721 (768)
T ss_dssp             GGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEECCCGGGGGCCCCSEEECCSSEEEEECC
T ss_pred             HHHhccccCCEEeCcCCccCCCCChHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECcCCcccccCC
Confidence            88888888888888888888888888888888888888888888 788888888888888888885556666

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=99.96  E-value=5.2e-29  Score=244.91  Aligned_cols=288  Identities=19%  Similarity=0.214  Sum_probs=218.6

Q ss_pred             eecCchhhh-ccChhhhcCCCCceEEEEeecCCCCcccccee-------------------ccCCCC---cCcccEEEec
Q 037308           10 LDMSTVKEI-RLNLSTFTKMPKLRFLKFYSSSFNGENKCKVS-------------------YLQDPR---FAEVKYFHWH   66 (321)
Q Consensus        10 l~~~~~~~~-~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~-------------------~~~~l~---~~~L~~l~l~   66 (321)
                      |+++++... .++...++.+++|++|++++|.+++..+....                   .+..+.   .++|++|+++
T Consensus       323 L~L~~n~l~~~ip~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~L~~L~L~  402 (768)
T 3rgz_A          323 LALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQ  402 (768)
T ss_dssp             EECCSSEEEEECCHHHHTTCTTCCEEECCSSEEEECCCTTHHHHTTTCSEEECCSSEEEEECCTTTTCSTTCCCCEEECC
T ss_pred             EECCCCcccCcCCHHHHhcCCCCCEEeCcCCccCccccHHHHhhhcCCcEEEccCCCcCCCcChhhhhcccCCccEEECC
Confidence            344555443 45555688888999999988876544332111                   111111   1456777777


Q ss_pred             CCCCC-CCCCcC-CcCceeEEeccCCcccc-cccCCCCCCChHhHHhhccccccccCCCCCCCCCCCCccEEEccCCCCC
Q 037308           67 GYPLK-SLPSNL-SAEKLVFLKVPYSDIEQ-LWNGEKHYSNLNQIINATCNKLIAKTPNPTLMPHLNKLVILNLRGSKSL  143 (321)
Q Consensus        67 ~~~l~-~~~~~~-~l~~L~~L~l~~~~l~~-~~~~~~~l~~L~~~l~l~~~~l~~~~~~~~~~~~l~~L~~L~l~~n~~~  143 (321)
                      +|.+. .+|..+ .+++|++|++++|.++. ++..+..+++|+. ++++.|.+.+.+|.  .+..+++|++|++++|.+.
T Consensus       403 ~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~-L~L~~n~l~~~~p~--~~~~l~~L~~L~L~~N~l~  479 (768)
T 3rgz_A          403 NNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRD-LKLWLNMLEGEIPQ--ELMYVKTLETLILDFNDLT  479 (768)
T ss_dssp             SSEEEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCE-EECCSSCCCSCCCG--GGGGCTTCCEEECCSSCCC
T ss_pred             CCccccccCHHHhcCCCCCEEECcCCcccCcccHHHhcCCCCCE-EECCCCcccCcCCH--HHcCCCCceEEEecCCccc
Confidence            66654 455555 67888888888888763 4566777888888 88888888877766  7888888899999988877


Q ss_pred             cccCccccCcccCcEEecCCCCCccccccc--ccCCccEEEeccccccc-cChhhhccCCCCeEecccCccccccccc--
Q 037308          144 KSLPSGIFNLEFLTKLDLSGCSKLKRLLEI--SSGNINWLFLRETAIEE-LPSSIERLLRLGHLDLSDCKRLKSLPSS--  218 (321)
Q Consensus       144 ~~~p~~l~~l~~L~~L~l~~~~~~~~~~~~--~~~~L~~L~l~~~~i~~-l~~~~~~l~~L~~L~l~~n~~~~~~~~~--  218 (321)
                      +.+|..+..+++|+.|++++|...+.+|..  .+++|++|++++|.+++ +|..+..+++|++|++++|.+.+.+|..  
T Consensus       480 ~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~  559 (768)
T 3rgz_A          480 GEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMF  559 (768)
T ss_dssp             SCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECCGGGGGCTTCCEEECCSSEEESBCCGGGG
T ss_pred             CcCCHHHhcCCCCCEEEccCCccCCcCChHHhcCCCCCEEECCCCcccCcCCHHHcCCCCCCEEECCCCccCCcCChHHh
Confidence            788888888999999999988776666654  57889999999999884 7888889999999999998877665543  


Q ss_pred             --------------------------------------------------------------------ccCCCCCCEEEe
Q 037308          219 --------------------------------------------------------------------LFKLKSLGVLNL  230 (321)
Q Consensus       219 --------------------------------------------------------------------~~~l~~L~~L~l  230 (321)
                                                                                          ++.+++|+.|++
T Consensus       560 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~LdL  639 (768)
T 3rgz_A          560 KQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDM  639 (768)
T ss_dssp             TTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSBCCCEEEC
T ss_pred             cccchhhhhccccccccccccccccccccccccccccccccchhhhccccccccccccceecccCchhhhccccccEEEC
Confidence                                                                                233567899999


Q ss_pred             cCCCCCCccccccCCCCCCcEEEcccCCCc-ccchhhhccCCcCEEeccCCCCccccc----Ccccccccccccc
Q 037308          231 GGCSNLQRLPECLGQLSSPIILNLAKTNVE-RIPESIIQLFVLRYLLLSYSERIQSVS----LPLARGILEDTQR  300 (321)
Q Consensus       231 ~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~-~l~~~l~~l~~L~~L~l~~n~~l~~~~----~~~~l~~l~~~~~  300 (321)
                      ++|++.+.+|..++.+++|+.|++++|+++ .+|..++.+++|++|++++|+.-..+|    ..++++.|+++++
T Consensus       640 s~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~ls~N  714 (768)
T 3rgz_A          640 SYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNN  714 (768)
T ss_dssp             CSSCCBSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEECCCGGGGGCCCCSEEECCSS
T ss_pred             cCCcccccCCHHHhccccCCEEeCcCCccCCCCChHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECcCC
Confidence            999999999999999999999999999999 899999999999999999995555766    3356777777765

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.96  E-value=9.3e-28  Score=229.71  Aligned_cols=276  Identities=13%  Similarity=0.108  Sum_probs=218.9

Q ss_pred             ecCchhhhccChhhhcCCCCceEEEEeecCCCCccccceeccCCCCc-CcccEEEecCCCCCCCCCcC--CcCceeEEec
Q 037308           11 DMSTVKEIRLNLSTFTKMPKLRFLKFYSSSFNGENKCKVSYLQDPRF-AEVKYFHWHGYPLKSLPSNL--SAEKLVFLKV   87 (321)
Q Consensus        11 ~~~~~~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~l~~-~~L~~l~l~~~~l~~~~~~~--~l~~L~~L~l   87 (321)
                      +++++....+++..++.+++|++|++++|.++      ...+..+.. ++|++|++++|.+..++...  .+++|++|++
T Consensus        57 ~l~~~~l~~lp~~~~~~l~~L~~L~L~~n~l~------~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L  130 (597)
T 3oja_B           57 TFKNSTMRKLPAALLDSFRQVELLNLNDLQIE------EIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVL  130 (597)
T ss_dssp             EESSCEESEECTHHHHHCCCCSEEECTTSCCC------EECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred             EeeCCCCCCcCHHHHccCCCCcEEECCCCCCC------CCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEEe
Confidence            44455455666677888999999999998754      223345666 99999999999998887653  7999999999


Q ss_pred             cCCcccccccCC-CCCCChHhHHhhccccccccCCCCCCCCCCCCccEEEccCCCCCcccCccccCcccCcEEecCCCCC
Q 037308           88 PYSDIEQLWNGE-KHYSNLNQIINATCNKLIAKTPNPTLMPHLNKLVILNLRGSKSLKSLPSGIFNLEFLTKLDLSGCSK  166 (321)
Q Consensus        88 ~~~~l~~~~~~~-~~l~~L~~~l~l~~~~l~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~l~~l~~L~~L~l~~~~~  166 (321)
                      ++|.++.++... ..+++|+. |+++.|.+.+..+.  .+..+++|++|++++|.+.+. +  ++.+++|+.|++++|..
T Consensus       131 ~~n~l~~l~~~~~~~l~~L~~-L~Ls~N~l~~~~~~--~~~~l~~L~~L~L~~N~l~~~-~--~~~l~~L~~L~l~~n~l  204 (597)
T 3oja_B          131 ERNDLSSLPRGIFHNTPKLTT-LSMSNNNLERIEDD--TFQATTSLQNLQLSSNRLTHV-D--LSLIPSLFHANVSYNLL  204 (597)
T ss_dssp             CSSCCCCCCTTTTTTCTTCCE-EECCSSCCCBCCTT--TTTTCTTCCEEECTTSCCSBC-C--GGGCTTCSEEECCSSCC
T ss_pred             eCCCCCCCCHHHhccCCCCCE-EEeeCCcCCCCChh--hhhcCCcCcEEECcCCCCCCc-C--hhhhhhhhhhhcccCcc
Confidence            999999887764 78899999 99999999844444  788999999999999985543 2  33455555555544322


Q ss_pred             ------------------cccccccccCCccEEEeccccccccChhhhccCCCCeEecccCcccccccccccCCCCCCEE
Q 037308          167 ------------------LKRLLEISSGNINWLFLRETAIEELPSSIERLLRLGHLDLSDCKRLKSLPSSLFKLKSLGVL  228 (321)
Q Consensus       167 ------------------~~~~~~~~~~~L~~L~l~~~~i~~l~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L  228 (321)
                                        +..++...+++|+.|++++|.+++. ..+..+++|++|++++|.+.+..|..++.+++|+.|
T Consensus       205 ~~l~~~~~L~~L~ls~n~l~~~~~~~~~~L~~L~L~~n~l~~~-~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L  283 (597)
T 3oja_B          205 STLAIPIAVEELDASHNSINVVRGPVNVELTILKLQHNNLTDT-AWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERL  283 (597)
T ss_dssp             SEEECCTTCSEEECCSSCCCEEECSCCSCCCEEECCSSCCCCC-GGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEE
T ss_pred             ccccCCchhheeeccCCcccccccccCCCCCEEECCCCCCCCC-hhhccCCCCCEEECCCCccCCCCHHHhcCccCCCEE
Confidence                              2222333356788899998888875 468889999999999999999889999999999999


Q ss_pred             EecCCCCCCccccccCCCCCCcEEEcccCCCcccchhhhccCCcCEEeccCCCCccccc--CccccccccccccC
Q 037308          229 NLGGCSNLQRLPECLGQLSSPIILNLAKTNVERIPESIIQLFVLRYLLLSYSERIQSVS--LPLARGILEDTQRS  301 (321)
Q Consensus       229 ~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~l~~~l~~l~~L~~L~l~~n~~l~~~~--~~~~l~~l~~~~~~  301 (321)
                      ++++|.+.+ +|..+..+++|+.|++++|.++.+|..+..+++|++|++++| .+..++  ..++++.|++.++.
T Consensus       284 ~Ls~N~l~~-l~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~L~~L~l~~N~  356 (597)
T 3oja_B          284 YISNNRLVA-LNLYGQPIPTLKVLDLSHNHLLHVERNQPQFDRLENLYLDHN-SIVTLKLSTHHTLKNLTLSHND  356 (597)
T ss_dssp             ECTTSCCCE-EECSSSCCTTCCEEECCSSCCCCCGGGHHHHTTCSEEECCSS-CCCCCCCCTTCCCSEEECCSSC
T ss_pred             ECCCCCCCC-CCcccccCCCCcEEECCCCCCCccCcccccCCCCCEEECCCC-CCCCcChhhcCCCCEEEeeCCC
Confidence            999987765 567778899999999999999999998999999999999999 777777  55788888887754

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=99.96  E-value=1.4e-28  Score=237.02  Aligned_cols=283  Identities=14%  Similarity=0.145  Sum_probs=201.8

Q ss_pred             ecCchhhhccChhhhcCCCCceEEEEeecC-CCC-ccccce-----------------------eccC--CCCc-CcccE
Q 037308           11 DMSTVKEIRLNLSTFTKMPKLRFLKFYSSS-FNG-ENKCKV-----------------------SYLQ--DPRF-AEVKY   62 (321)
Q Consensus        11 ~~~~~~~~~~~~~~l~~l~~L~~L~l~~n~-~~~-~~~~~~-----------------------~~~~--~l~~-~~L~~   62 (321)
                      +++++.....-+..++.+++|++|++++|. ++| ..+...                       ..+.  .+.. ++|+.
T Consensus       255 ~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~~ip~~~~l~~l~~L~~  334 (636)
T 4eco_A          255 EVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLKTFPVETSLQKMKKLGM  334 (636)
T ss_dssp             EEECCTTCSSCCTTTTTCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCSSCCCHHHHTTCTTCCE
T ss_pred             EecCCcCCccChHHHhcCCCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCCccCchhhhccCCCCCE
Confidence            334444344445677888888888888887 766 322111                       1122  2334 66666


Q ss_pred             EEecCCCCC-CCCCcC-CcCceeEEeccCCcccccccCCCCCCC-hHhHHhhccccccccCCCCCCCCCCC--CccEEEc
Q 037308           63 FHWHGYPLK-SLPSNL-SAEKLVFLKVPYSDIEQLWNGEKHYSN-LNQIINATCNKLIAKTPNPTLMPHLN--KLVILNL  137 (321)
Q Consensus        63 l~l~~~~l~-~~~~~~-~l~~L~~L~l~~~~l~~~~~~~~~l~~-L~~~l~l~~~~l~~~~~~~~~~~~l~--~L~~L~l  137 (321)
                      |++++|.+. .+| .+ .+++|++|++++|.++.++..+..+++ |+. ++++.|.++ .+|.  .+..+.  +|++|++
T Consensus       335 L~L~~N~l~g~ip-~~~~l~~L~~L~L~~N~l~~lp~~l~~l~~~L~~-L~Ls~N~l~-~lp~--~~~~~~l~~L~~L~L  409 (636)
T 4eco_A          335 LECLYNQLEGKLP-AFGSEIKLASLNLAYNQITEIPANFCGFTEQVEN-LSFAHNKLK-YIPN--IFDAKSVSVMSAIDF  409 (636)
T ss_dssp             EECCSCCCEEECC-CCEEEEEESEEECCSSEEEECCTTSEEECTTCCE-EECCSSCCS-SCCS--CCCTTCSSCEEEEEC
T ss_pred             EeCcCCcCccchh-hhCCCCCCCEEECCCCccccccHhhhhhcccCcE-EEccCCcCc-ccch--hhhhcccCccCEEEC
Confidence            666666665 666 33 566777777777777766666777777 777 777777777 6765  554443  7888888


Q ss_pred             cCCCCCcccCcccc-------CcccCcEEecCCCCCccccccc---ccCCccEEEeccccccccChhhhcc--------C
Q 037308          138 RGSKSLKSLPSGIF-------NLEFLTKLDLSGCSKLKRLLEI---SSGNINWLFLRETAIEELPSSIERL--------L  199 (321)
Q Consensus       138 ~~n~~~~~~p~~l~-------~l~~L~~L~l~~~~~~~~~~~~---~~~~L~~L~l~~~~i~~l~~~~~~l--------~  199 (321)
                      ++|.+.+..|..+.       .+++|+.|++++|... .+|..   .+++|++|++++|.++.+|......        +
T Consensus       410 s~N~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N~l~-~lp~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~~~~~~~~l~  488 (636)
T 4eco_A          410 SYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQIS-KFPKELFSTGSPLSSINLMGNMLTEIPKNSLKDENENFKNTY  488 (636)
T ss_dssp             CSSCTTTTTTCSSCTTCSSCCCCCCEEEEECCSSCCC-SCCTHHHHTTCCCSEEECCSSCCSBCCSSSSEETTEECTTGG
T ss_pred             cCCcCCCcchhhhcccccccccCCCCCEEECcCCccC-cCCHHHHccCCCCCEEECCCCCCCCcCHHHhccccccccccC
Confidence            88877776666666       6678888888886544 45543   3678888888888888877643322        2


Q ss_pred             CCCeEecccCccccccccccc--CCCCCCEEEecCCCCCCccccccCCCCCCcEEEcc------cCCCc-ccchhhhccC
Q 037308          200 RLGHLDLSDCKRLKSLPSSLF--KLKSLGVLNLGGCSNLQRLPECLGQLSSPIILNLA------KTNVE-RIPESIIQLF  270 (321)
Q Consensus       200 ~L~~L~l~~n~~~~~~~~~~~--~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~------~n~l~-~l~~~l~~l~  270 (321)
                      +|++|++++|.+. .+|..+.  .+++|+.|++++|.+.+ +|..+..+++|+.|+++      +|++. .+|..+..++
T Consensus       489 ~L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~-ip~~~~~l~~L~~L~Ls~N~~ls~N~l~~~~p~~l~~l~  566 (636)
T 4eco_A          489 LLTSIDLRFNKLT-KLSDDFRATTLPYLVGIDLSYNSFSK-FPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCP  566 (636)
T ss_dssp             GCCEEECCSSCCC-BCCGGGSTTTCTTCCEEECCSSCCSS-CCCGGGGCSSCCEEECCSCBCTTCCBCCCCCCTTGGGCS
T ss_pred             CccEEECcCCcCC-ccChhhhhccCCCcCEEECCCCCCCC-cChhhhcCCCCCEEECCCCcccccCcccccChHHHhcCC
Confidence            8889999988877 5677666  88999999999988877 78888889999999994      45555 7888888999


Q ss_pred             CcCEEeccCCCCccccc--CccccccccccccCc
Q 037308          271 VLRYLLLSYSERIQSVS--LPLARGILEDTQRSP  302 (321)
Q Consensus       271 ~L~~L~l~~n~~l~~~~--~~~~l~~l~~~~~~~  302 (321)
                      +|++|++++| .++.+|  +.++++.|++.++.-
T Consensus       567 ~L~~L~Ls~N-~l~~ip~~~~~~L~~L~Ls~N~l  599 (636)
T 4eco_A          567 SLTQLQIGSN-DIRKVNEKITPNISVLDIKDNPN  599 (636)
T ss_dssp             SCCEEECCSS-CCCBCCSCCCTTCCEEECCSCTT
T ss_pred             CCCEEECCCC-cCCccCHhHhCcCCEEECcCCCC
Confidence            9999999999 668888  668889998888643

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=99.96  E-value=7.5e-28  Score=224.32  Aligned_cols=267  Identities=19%  Similarity=0.162  Sum_probs=187.4

Q ss_pred             eecCchhhhccChhhhcCCCCceEEEEeecCCCCccccceeccCCCCc-CcccEEEecCCCCCCCCCcC--CcCceeEEe
Q 037308           10 LDMSTVKEIRLNLSTFTKMPKLRFLKFYSSSFNGENKCKVSYLQDPRF-AEVKYFHWHGYPLKSLPSNL--SAEKLVFLK   86 (321)
Q Consensus        10 l~~~~~~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~l~~-~~L~~l~l~~~~l~~~~~~~--~l~~L~~L~   86 (321)
                      ||++++......+..|..+++|++|++++|.++      ...+..+.. ++|++|++++|.+..++...  .+++|++|+
T Consensus        37 L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~------~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~  110 (477)
T 2id5_A           37 LDLGKNRIKTLNQDEFASFPHLEELELNENIVS------AVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLD  110 (477)
T ss_dssp             EECCSSCCCEECTTTTTTCTTCCEEECTTSCCC------EECTTTTTTCTTCCEEECCSSCCCSCCTTSSTTCTTCCEEE
T ss_pred             EECCCCccceECHhHccCCCCCCEEECCCCccC------EeChhhhhCCccCCEEECCCCcCCccCcccccCCCCCCEEE
Confidence            556666666666778888999999999988754      233455666 88899999888888887653  788888888


Q ss_pred             ccCCcccccc-cCCCCCCChHhHHhhccccccccCCCCCCCCCCCCccEEEccCCCCCcccCccccCcccCcEEecC---
Q 037308           87 VPYSDIEQLW-NGEKHYSNLNQIINATCNKLIAKTPNPTLMPHLNKLVILNLRGSKSLKSLPSGIFNLEFLTKLDLS---  162 (321)
Q Consensus        87 l~~~~l~~~~-~~~~~l~~L~~~l~l~~~~l~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~l~~l~~L~~L~l~---  162 (321)
                      +++|.+..+. ..+..+++|+. ++++.|.+.+..+.  .+..+++|++|++++|.+....+..+..+++|+.|+++   
T Consensus       111 Ls~n~i~~~~~~~~~~l~~L~~-L~l~~n~l~~~~~~--~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~  187 (477)
T 2id5_A          111 ISENKIVILLDYMFQDLYNLKS-LEVGDNDLVYISHR--AFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLN  187 (477)
T ss_dssp             CTTSCCCEECTTTTTTCTTCCE-EEECCTTCCEECTT--SSTTCTTCCEEEEESCCCSSCCHHHHTTCTTCCEEEEESCC
T ss_pred             CCCCccccCChhHccccccCCE-EECCCCccceeChh--hccCCCCCCEEECCCCcCcccChhHhcccCCCcEEeCCCCc
Confidence            8888887763 45677788888 88888877743443  67777777777777776443322234444455555444   


Q ss_pred             ---------------------CCCCccccccc--ccCCccEEEeccccccccCh-hhhccCCCCeEecccCccccccccc
Q 037308          163 ---------------------GCSKLKRLLEI--SSGNINWLFLRETAIEELPS-SIERLLRLGHLDLSDCKRLKSLPSS  218 (321)
Q Consensus       163 ---------------------~~~~~~~~~~~--~~~~L~~L~l~~~~i~~l~~-~~~~l~~L~~L~l~~n~~~~~~~~~  218 (321)
                                           +|...+.++..  ...+|+.|++++|.++++|. .+..+++|++|++++|.+.+..+..
T Consensus       188 i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~  267 (477)
T 2id5_A          188 INAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPISTIEGSM  267 (477)
T ss_dssp             CCEECTTCSCSCTTCCEEEEECCTTCCEECTTTTTTCCCSEEEEESSCCCSCCHHHHTTCTTCCEEECCSSCCCEECTTS
T ss_pred             CcEeChhhcccCcccceeeCCCCccccccCcccccCccccEEECcCCcccccCHHHhcCccccCeeECCCCcCCccChhh
Confidence                                 44444433332  23367777777777777774 4677778888888888777666666


Q ss_pred             ccCCCCCCEEEecCCCCCCccccccCCCCCCcEEEcccCCCcccch-hhhccCCcCEEeccCCCCccc
Q 037308          219 LFKLKSLGVLNLGGCSNLQRLPECLGQLSSPIILNLAKTNVERIPE-SIIQLFVLRYLLLSYSERIQS  285 (321)
Q Consensus       219 ~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~l~~-~l~~l~~L~~L~l~~n~~l~~  285 (321)
                      +..+++|+.|++++|.+.+..+..+..+++|+.|++++|+++.++. .+..+++|++|++++|+...+
T Consensus       268 ~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~c~  335 (477)
T 2id5_A          268 LHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSVGNLETLILDSNPLACD  335 (477)
T ss_dssp             CTTCTTCCEEECCSSCCSEECTTTBTTCTTCCEEECCSSCCSCCCGGGBSCGGGCCEEECCSSCEECS
T ss_pred             ccccccCCEEECCCCccceECHHHhcCcccCCEEECCCCcCceeCHhHcCCCcccCEEEccCCCccCc
Confidence            7778888888888877777777777788888888888888887764 456777888888888854433

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=99.96  E-value=1.4e-27  Score=224.71  Aligned_cols=150  Identities=19%  Similarity=0.177  Sum_probs=112.4

Q ss_pred             cCcccCcEEecCCCCCccccccc--ccCCccEEEecccccccc---ChhhhccCCCCeEecccCcccccccc-cccCCCC
Q 037308          151 FNLEFLTKLDLSGCSKLKRLLEI--SSGNINWLFLRETAIEEL---PSSIERLLRLGHLDLSDCKRLKSLPS-SLFKLKS  224 (321)
Q Consensus       151 ~~l~~L~~L~l~~~~~~~~~~~~--~~~~L~~L~l~~~~i~~l---~~~~~~l~~L~~L~l~~n~~~~~~~~-~~~~l~~  224 (321)
                      ..+++|++|++++|...+..+..  .+++|++|++++|.++++   |..+..+++|++|++++|.+.+.+|. .+..+++
T Consensus       321 ~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~~~~l~~  400 (520)
T 2z7x_B          321 SKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKS  400 (520)
T ss_dssp             SSCCCCCEEECCSSCCCTTTTTTCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBCCGGGCSCCCCTT
T ss_pred             hhCCcccEEEeECCccChhhhhhhccCCCCCEEEccCCccCccccchHHHhhCCCCCEEECCCCcCCcccccchhccCcc
Confidence            45667777777776655444433  467788888888888753   34577778888888888887764554 4677788


Q ss_pred             CCEEEecCCCCCCccccccCCCCCCcEEEcccCCCcccchhhhccCCcCEEeccCCCCccccc-C----ccccccccccc
Q 037308          225 LGVLNLGGCSNLQRLPECLGQLSSPIILNLAKTNVERIPESIIQLFVLRYLLLSYSERIQSVS-L----PLARGILEDTQ  299 (321)
Q Consensus       225 L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~l~~~l~~l~~L~~L~l~~n~~l~~~~-~----~~~l~~l~~~~  299 (321)
                      |+.|++++|.+.+..|..+.  ++|+.|++++|+++.+|..+..+++|++|++++| .++.+| .    .++++.|++.+
T Consensus       401 L~~L~Ls~N~l~~~~~~~l~--~~L~~L~Ls~N~l~~ip~~~~~l~~L~~L~L~~N-~l~~l~~~~~~~l~~L~~L~l~~  477 (520)
T 2z7x_B          401 LLSLNMSSNILTDTIFRCLP--PRIKVLDLHSNKIKSIPKQVVKLEALQELNVASN-QLKSVPDGIFDRLTSLQKIWLHT  477 (520)
T ss_dssp             CCEEECCSSCCCGGGGGSCC--TTCCEEECCSSCCCCCCGGGGGCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCS
T ss_pred             CCEEECcCCCCCcchhhhhc--ccCCEEECCCCcccccchhhhcCCCCCEEECCCC-cCCccCHHHhccCCcccEEECcC
Confidence            88888888887776666543  7899999999999999988889999999999999 888887 1    34677777776


Q ss_pred             cCcc
Q 037308          300 RSPH  303 (321)
Q Consensus       300 ~~~~  303 (321)
                      ..-.
T Consensus       478 N~~~  481 (520)
T 2z7x_B          478 NPWD  481 (520)
T ss_dssp             SCBC
T ss_pred             CCCc
Confidence            5443

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}

Probab=99.96  E-value=3.6e-28  Score=239.39  Aligned_cols=288  Identities=16%  Similarity=0.153  Sum_probs=177.7

Q ss_pred             ceEEEEeecCchhhhccChhhhcCCCCceEEEEeecC-CCC-ccccceeccC-CCCc-CcccEEEecCCCCCCCCC--cC
Q 037308            4 KIEGICLDMSTVKEIRLNLSTFTKMPKLRFLKFYSSS-FNG-ENKCKVSYLQ-DPRF-AEVKYFHWHGYPLKSLPS--NL   77 (321)
Q Consensus         4 ~~~~~~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~n~-~~~-~~~~~~~~~~-~l~~-~~L~~l~l~~~~l~~~~~--~~   77 (321)
                      +++.+.+  +++.....-+..++.+++|++|++++|. ++| ..+....... .+.. ++|+.|++++|.+..+|.  .+
T Consensus       492 ~L~~L~L--s~N~l~~~iP~~l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~~ip~~~~l  569 (876)
T 4ecn_A          492 DLTDVEL--YNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLEEFPASASL  569 (876)
T ss_dssp             TCCEEEE--ESCTTCCSCCGGGGGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCCBCCCHHHH
T ss_pred             CCCEEEC--cCCCCCccChHHHhCCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCCccCChhhh
Confidence            3444444  4443334444678888888888888886 665 3332221111 2222 566666666666666666  33


Q ss_pred             -CcCceeEEeccCCcccccccCCCCCCChHhHHhhccccccccCCCCCCCCCCCC-ccEEEccCCCCCcccCccccCccc
Q 037308           78 -SAEKLVFLKVPYSDIEQLWNGEKHYSNLNQIINATCNKLIAKTPNPTLMPHLNK-LVILNLRGSKSLKSLPSGIFNLEF  155 (321)
Q Consensus        78 -~l~~L~~L~l~~~~l~~~~~~~~~l~~L~~~l~l~~~~l~~~~~~~~~~~~l~~-L~~L~l~~n~~~~~~p~~l~~l~~  155 (321)
                       .+++|+.|++++|.++.++ .+..+++|+. ++++.|.+. .+|.  .+..+++ |++|++++|.+. .+|..+..++.
T Consensus       570 ~~L~~L~~L~Ls~N~l~~lp-~~~~L~~L~~-L~Ls~N~l~-~lp~--~l~~l~~~L~~L~Ls~N~L~-~lp~~~~~~~~  643 (876)
T 4ecn_A          570 QKMVKLGLLDCVHNKVRHLE-AFGTNVKLTD-LKLDYNQIE-EIPE--DFCAFTDQVEGLGFSHNKLK-YIPNIFNAKSV  643 (876)
T ss_dssp             TTCTTCCEEECTTSCCCBCC-CCCTTSEESE-EECCSSCCS-CCCT--TSCEECTTCCEEECCSSCCC-SCCSCCCTTCS
T ss_pred             hcCCCCCEEECCCCCcccch-hhcCCCcceE-EECcCCccc-cchH--HHhhccccCCEEECcCCCCC-cCchhhhcccc
Confidence             5666666666666666555 5566666666 666666666 5554  5566665 666666666533 44544433322


Q ss_pred             --CcEEecCCCCCcc----------------------------ccccc---ccCCccEEEeccccccccChhhhc-----
Q 037308          156 --LTKLDLSGCSKLK----------------------------RLLEI---SSGNINWLFLRETAIEELPSSIER-----  197 (321)
Q Consensus       156 --L~~L~l~~~~~~~----------------------------~~~~~---~~~~L~~L~l~~~~i~~l~~~~~~-----  197 (321)
                        |+.|++++|...+                            .+|..   .+++|+.|++++|.++.+|..+..     
T Consensus       644 ~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N~L~~lp~~~~~~l~~L~~L~Ls~N~L~~ip~~~~~~~~~~  723 (876)
T 4ecn_A          644 YVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQKFPTELFATGSPISTIILSNNLMTSIPENSLKPKDGN  723 (876)
T ss_dssp             SCEEEEECCSSCTTTTSSSCSSCTTTCCCCCEEEEECCSSCCCSCCHHHHHTTCCCSEEECCSCCCSCCCTTSSSCTTSC
T ss_pred             CCCCEEECcCCcCCCccccchhhhccccCCCcCEEEccCCcCCccCHHHHccCCCCCEEECCCCcCCccChHHhcccccc
Confidence              4444444443322                            33322   245666677766666666654322     


Q ss_pred             ---cCCCCeEecccCccccccccccc--CCCCCCEEEecCCCCCCccccccCCCCCCcEEEccc------CCCc-ccchh
Q 037308          198 ---LLRLGHLDLSDCKRLKSLPSSLF--KLKSLGVLNLGGCSNLQRLPECLGQLSSPIILNLAK------TNVE-RIPES  265 (321)
Q Consensus       198 ---l~~L~~L~l~~n~~~~~~~~~~~--~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~------n~l~-~l~~~  265 (321)
                         +++|++|++++|.+. .+|..+.  .+++|+.|++++|.+.+ +|..+..+++|+.|++++      |++. .+|..
T Consensus       724 l~nl~~L~~L~Ls~N~L~-~lp~~l~~~~l~~L~~L~Ls~N~L~~-lp~~l~~L~~L~~L~Ls~N~~ls~N~l~~~ip~~  801 (876)
T 4ecn_A          724 YKNTYLLTTIDLRFNKLT-SLSDDFRATTLPYLSNMDVSYNCFSS-FPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTG  801 (876)
T ss_dssp             CTTGGGCCEEECCSSCCC-CCCGGGSTTTCTTCCEEECCSSCCSS-CCCGGGGCTTCCEEECCCCBCTTCCBCCCCCCTT
T ss_pred             ccccCCccEEECCCCCCc-cchHHhhhccCCCcCEEEeCCCCCCc-cchhhhcCCCCCEEECCCCCCcccccccccChHH
Confidence               226777777777655 5566555  77788888888777665 677777788888888765      5544 67777


Q ss_pred             hhccCCcCEEeccCCCCccccc--CccccccccccccCc
Q 037308          266 IIQLFVLRYLLLSYSERIQSVS--LPLARGILEDTQRSP  302 (321)
Q Consensus       266 l~~l~~L~~L~l~~n~~l~~~~--~~~~l~~l~~~~~~~  302 (321)
                      +..+++|++|++++| .++.+|  ++++++.|+++++.-
T Consensus       802 l~~L~~L~~L~Ls~N-~L~~Ip~~l~~~L~~LdLs~N~l  839 (876)
T 4ecn_A          802 ITTCPSLIQLQIGSN-DIRKVDEKLTPQLYILDIADNPN  839 (876)
T ss_dssp             GGGCSSCCEEECCSS-CCCBCCSCCCSSSCEEECCSCTT
T ss_pred             HhcCCCCCEEECCCC-CCCccCHhhcCCCCEEECCCCCC
Confidence            788888888888888 568887  667888888887654

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=99.95  E-value=5.2e-27  Score=223.01  Aligned_cols=278  Identities=15%  Similarity=0.148  Sum_probs=198.0

Q ss_pred             eecCchhhhccChhhhcCCCCceEEEEeecCCCCccccceeccCCCCc-CcccEEEecCCCCCCCCCcCCcCceeEEecc
Q 037308           10 LDMSTVKEIRLNLSTFTKMPKLRFLKFYSSSFNGENKCKVSYLQDPRF-AEVKYFHWHGYPLKSLPSNLSAEKLVFLKVP   88 (321)
Q Consensus        10 l~~~~~~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~l~~-~~L~~l~l~~~~l~~~~~~~~l~~L~~L~l~   88 (321)
                      ||++++......+..|+.+++|++|++++|.++      ...+..+.. ++|++|++++|.+..+|.. .+++|++|+++
T Consensus        57 L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~------~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~-~l~~L~~L~Ls  129 (562)
T 3a79_B           57 LSLSQNSISELRMPDISFLSELRVLRLSHNRIR------SLDFHVFLFNQDLEYLDVSHNRLQNISCC-PMASLRHLDLS  129 (562)
T ss_dssp             EECCSSCCCCCCGGGTTTCTTCCEEECCSCCCC------EECTTTTTTCTTCCEEECTTSCCCEECSC-CCTTCSEEECC
T ss_pred             EECCCCCccccChhhhccCCCccEEECCCCCCC------cCCHHHhCCCCCCCEEECCCCcCCccCcc-ccccCCEEECC
Confidence            455666666676778889999999999998754      233455666 8888999988888888877 88888888888


Q ss_pred             CCcccccc--cCCCCCCChHhHHhhccccccccCCCCCCCCCCC------------------------------------
Q 037308           89 YSDIEQLW--NGEKHYSNLNQIINATCNKLIAKTPNPTLMPHLN------------------------------------  130 (321)
Q Consensus        89 ~~~l~~~~--~~~~~l~~L~~~l~l~~~~l~~~~~~~~~~~~l~------------------------------------  130 (321)
                      +|+++.++  ..+..+++|+. ++++.|.+.+ .    .+..++                                    
T Consensus       130 ~N~l~~l~~p~~~~~l~~L~~-L~L~~n~l~~-~----~~~~l~~L~L~~L~L~~n~l~~~~~~~~~l~~l~~~~l~l~l  203 (562)
T 3a79_B          130 FNDFDVLPVCKEFGNLTKLTF-LGLSAAKFRQ-L----DLLPVAHLHLSCILLDLVSYHIKGGETESLQIPNTTVLHLVF  203 (562)
T ss_dssp             SSCCSBCCCCGGGGGCTTCCE-EEEECSBCCT-T----TTGGGTTSCEEEEEEEESSCCCCSSSCCEEEECCEEEEEEEE
T ss_pred             CCCccccCchHhhcccCcccE-EecCCCcccc-C----chhhhhhceeeEEEeecccccccccCcccccccCcceEEEEe
Confidence            88887754  56777778777 7777776652 1    111112                                    


Q ss_pred             -------------------------------------------------------------------------CccEEEc
Q 037308          131 -------------------------------------------------------------------------KLVILNL  137 (321)
Q Consensus       131 -------------------------------------------------------------------------~L~~L~l  137 (321)
                                                                                               +|++|++
T Consensus       204 ~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~l~~~~~~l~~l~~L~~L~L~~~~l~~~~~~~~~~~~~~~~L~~L~l  283 (562)
T 3a79_B          204 HPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWKCSVKLFQFFWPRPVEYLNI  283 (562)
T ss_dssp             CSSSCCCCCCEEEESSEEEEEEEEEECCSTTHHHHHHHHHHHHSCSSCEEEEEEEEEECHHHHHHHHHHHTTSSEEEEEE
T ss_pred             cCccchhhhhhhcccccceEEEecccccccccchHHHHHHHHhccCcceEEEecCCcCcHHHHHHHHHhhhcccccEEEE
Confidence                                                                                     3444444


Q ss_pred             cCCCCCcccCccc-----------------------------------------------------cCcccCcEEecCCC
Q 037308          138 RGSKSLKSLPSGI-----------------------------------------------------FNLEFLTKLDLSGC  164 (321)
Q Consensus       138 ~~n~~~~~~p~~l-----------------------------------------------------~~l~~L~~L~l~~~  164 (321)
                      ++|.+.+.+|..+                                                     ..+++|++|++++|
T Consensus       284 ~~n~l~~~ip~~~~~~~~~~L~~L~~~~~~~~~~~~p~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~l~~L~~L~l~~n  363 (562)
T 3a79_B          284 YNLTITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAEMNIKMLSISDTPFIHMVCPPSPSSFTFLNFTQN  363 (562)
T ss_dssp             EEEEECSCCCCCCCCCCSCSCCEEEEEEEEECCCSSCHHHHHHHHHTCCCSEEEEESSCCCCCCCCSSCCCCCEEECCSS
T ss_pred             eccEeeccccchhhhcccccchheehhhcccceeecChhhhhhhhccCcceEEEccCCCcccccCccCCCCceEEECCCC
Confidence            4444333444433                                                     45667777777776


Q ss_pred             CCccccccc--ccCCccEEEeccccccccC---hhhhccCCCCeEecccCcccccccc-cccCCCCCCEEEecCCCCCCc
Q 037308          165 SKLKRLLEI--SSGNINWLFLRETAIEELP---SSIERLLRLGHLDLSDCKRLKSLPS-SLFKLKSLGVLNLGGCSNLQR  238 (321)
Q Consensus       165 ~~~~~~~~~--~~~~L~~L~l~~~~i~~l~---~~~~~l~~L~~L~l~~n~~~~~~~~-~~~~l~~L~~L~l~~~~~~~~  238 (321)
                      ...+..+..  .+++|++|++++|.+++++   ..+..+++|++|++++|.+.+.+|. .+..+++|+.|++++|.+.+.
T Consensus       364 ~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~  443 (562)
T 3a79_B          364 VFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTGS  443 (562)
T ss_dssp             CCCTTTTTTCCSCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECTTSCCBSCCSSCCCCCCTTCCEEECCSSCCCGG
T ss_pred             ccccchhhhhcccCCCCEEECCCCCcCCcccchhhhcCCCCCCEEECCCCcCCCccChhhhcCcccCCEEECCCCCCCcc
Confidence            655444433  4677888888888887655   3467778888888888887764443 467788888888888887766


Q ss_pred             cccccCCCCCCcEEEcccCCCcccchhhhccCCcCEEeccCCCCccccc-----CccccccccccccCcc
Q 037308          239 LPECLGQLSSPIILNLAKTNVERIPESIIQLFVLRYLLLSYSERIQSVS-----LPLARGILEDTQRSPH  303 (321)
Q Consensus       239 ~~~~~~~~~~L~~L~l~~n~l~~l~~~l~~l~~L~~L~l~~n~~l~~~~-----~~~~l~~l~~~~~~~~  303 (321)
                      .|..+.  ++|+.|++++|+++.+|..+..+++|++|++++| .++.+|     ..++++.+++.+..-.
T Consensus       444 ~~~~l~--~~L~~L~L~~N~l~~ip~~~~~l~~L~~L~L~~N-~l~~l~~~~~~~l~~L~~L~l~~N~~~  510 (562)
T 3a79_B          444 VFRCLP--PKVKVLDLHNNRIMSIPKDVTHLQALQELNVASN-QLKSVPDGVFDRLTSLQYIWLHDNPWD  510 (562)
T ss_dssp             GGSSCC--TTCSEEECCSSCCCCCCTTTTSSCCCSEEECCSS-CCCCCCTTSTTTCTTCCCEECCSCCBC
T ss_pred             hhhhhc--CcCCEEECCCCcCcccChhhcCCCCCCEEECCCC-CCCCCCHHHHhcCCCCCEEEecCCCcC
Confidence            655443  6899999999999999988889999999999999 888887     2346677777765433

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=99.95  E-value=1.7e-27  Score=221.91  Aligned_cols=240  Identities=16%  Similarity=0.131  Sum_probs=166.8

Q ss_pred             ecCchhhhccChhhhcCCCCceEEEEeecCCCCccccceeccCCCCc-CcccEEEecCCCCCCCCCc-C-CcCceeEEec
Q 037308           11 DMSTVKEIRLNLSTFTKMPKLRFLKFYSSSFNGENKCKVSYLQDPRF-AEVKYFHWHGYPLKSLPSN-L-SAEKLVFLKV   87 (321)
Q Consensus        11 ~~~~~~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~l~~-~~L~~l~l~~~~l~~~~~~-~-~l~~L~~L~l   87 (321)
                      +++++......+..|+.+++|++|++++|.+++..      ...+.. ++|++|++++|.+..++.. + .+++|++|++
T Consensus        62 ~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~------~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l  135 (477)
T 2id5_A           62 ELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIP------LGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEV  135 (477)
T ss_dssp             ECTTSCCCEECTTTTTTCTTCCEEECCSSCCCSCC------TTSSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEE
T ss_pred             ECCCCccCEeChhhhhCCccCCEEECCCCcCCccC------cccccCCCCCCEEECCCCccccCChhHccccccCCEEEC
Confidence            34444444555567777888888888877654221      112233 5555555555554443221 2 4455555555


Q ss_pred             cCCcccc------------------------ccc-CCCCCCChHhHHhhccccccccCCCCCCCCCCCCccEEEccCCCC
Q 037308           88 PYSDIEQ------------------------LWN-GEKHYSNLNQIINATCNKLIAKTPNPTLMPHLNKLVILNLRGSKS  142 (321)
Q Consensus        88 ~~~~l~~------------------------~~~-~~~~l~~L~~~l~l~~~~l~~~~~~~~~~~~l~~L~~L~l~~n~~  142 (321)
                      ++|.+..                        ++. .+..+++|+. ++++.|.+.+..+.  .+..+++|++|++++|..
T Consensus       136 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~-L~l~~n~i~~~~~~--~~~~l~~L~~L~l~~~~~  212 (477)
T 2id5_A          136 GDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIV-LRLRHLNINAIRDY--SFKRLYRLKVLEISHWPY  212 (477)
T ss_dssp             CCTTCCEECTTSSTTCTTCCEEEEESCCCSSCCHHHHTTCTTCCE-EEEESCCCCEECTT--CSCSCTTCCEEEEECCTT
T ss_pred             CCCccceeChhhccCCCCCCEEECCCCcCcccChhHhcccCCCcE-EeCCCCcCcEeChh--hcccCcccceeeCCCCcc
Confidence            5554444                        332 2344445555 55555555522222  567777778888877776


Q ss_pred             CcccCccccCcccCcEEecCCCCCccccccc---ccCCccEEEeccccccccCh-hhhccCCCCeEecccCccccccccc
Q 037308          143 LKSLPSGIFNLEFLTKLDLSGCSKLKRLLEI---SSGNINWLFLRETAIEELPS-SIERLLRLGHLDLSDCKRLKSLPSS  218 (321)
Q Consensus       143 ~~~~p~~l~~l~~L~~L~l~~~~~~~~~~~~---~~~~L~~L~l~~~~i~~l~~-~~~~l~~L~~L~l~~n~~~~~~~~~  218 (321)
                      .+.+|.......+|+.|++++|.. +.++..   .+++|+.|++++|.+++++. .+..+++|++|++++|.+.+..+..
T Consensus       213 ~~~~~~~~~~~~~L~~L~l~~n~l-~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~  291 (477)
T 2id5_A          213 LDTMTPNCLYGLNLTSLSITHCNL-TAVPYLAVRHLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVVEPYA  291 (477)
T ss_dssp             CCEECTTTTTTCCCSEEEEESSCC-CSCCHHHHTTCTTCCEEECCSSCCCEECTTSCTTCTTCCEEECCSSCCSEECTTT
T ss_pred             ccccCcccccCccccEEECcCCcc-cccCHHHhcCccccCeeECCCCcCCccChhhccccccCCEEECCCCccceECHHH
Confidence            666666555666999999999754 445532   57899999999999999774 4788999999999999999888889


Q ss_pred             ccCCCCCCEEEecCCCCCCccccccCCCCCCcEEEcccCCCc
Q 037308          219 LFKLKSLGVLNLGGCSNLQRLPECLGQLSSPIILNLAKTNVE  260 (321)
Q Consensus       219 ~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~  260 (321)
                      +..+++|+.|++++|.+.+..+..+..+++|+.|++++|.++
T Consensus       292 ~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~  333 (477)
T 2id5_A          292 FRGLNYLRVLNVSGNQLTTLEESVFHSVGNLETLILDSNPLA  333 (477)
T ss_dssp             BTTCTTCCEEECCSSCCSCCCGGGBSCGGGCCEEECCSSCEE
T ss_pred             hcCcccCCEEECCCCcCceeCHhHcCCCcccCEEEccCCCcc
Confidence            999999999999999888877778899999999999999998

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=99.95  E-value=3.5e-27  Score=226.01  Aligned_cols=263  Identities=21%  Similarity=0.199  Sum_probs=180.3

Q ss_pred             EeecCchhhhccChhhhcCCCCceEEEEeecCCCCccccceeccCCCCc-CcccEEEecCCCCCCCCC-cC-CcCceeEE
Q 037308            9 CLDMSTVKEIRLNLSTFTKMPKLRFLKFYSSSFNGENKCKVSYLQDPRF-AEVKYFHWHGYPLKSLPS-NL-SAEKLVFL   85 (321)
Q Consensus         9 ~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~l~~-~~L~~l~l~~~~l~~~~~-~~-~l~~L~~L   85 (321)
                      .||++++......+..|+++++|++|++++|.++      ...+..+.. ++|++|++++|.+..++. .+ .+++|++|
T Consensus        37 ~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~------~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L  110 (606)
T 3t6q_A           37 CLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIY------WIHEDTFQSQHRLDTLVLTANPLIFMAETALSGPKALKHL  110 (606)
T ss_dssp             EEECTTCCCSEECTTTSTTCTTCSEEECTTCCCC------EECTTTTTTCTTCCEEECTTCCCSEECTTTTSSCTTCCEE
T ss_pred             EEEccCCccCcCChhHhccCccceEEECCCCccc------eeChhhccCccccCeeeCCCCcccccChhhhcccccccEe
Confidence            4566777666777788999999999999998744      344556666 899999999998876643 44 78999999


Q ss_pred             eccCCccccc-ccCCCCCCChHhHHhhccccccccCCCCCCCCCCCCccEEEccCCCCCcccCccccCcccCc--EEecC
Q 037308           86 KVPYSDIEQL-WNGEKHYSNLNQIINATCNKLIAKTPNPTLMPHLNKLVILNLRGSKSLKSLPSGIFNLEFLT--KLDLS  162 (321)
Q Consensus        86 ~l~~~~l~~~-~~~~~~l~~L~~~l~l~~~~l~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~l~~l~~L~--~L~l~  162 (321)
                      ++++|+++.+ +..+..+++|+. ++++.|.+. .++.+ .+..+++|++|++++|.+.+..|..++.+++|+  .++++
T Consensus       111 ~L~~n~i~~l~~~~~~~l~~L~~-L~L~~n~l~-~~~~~-~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~l~L~l~  187 (606)
T 3t6q_A          111 FFIQTGISSIDFIPLHNQKTLES-LYLGSNHIS-SIKLP-KGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLN  187 (606)
T ss_dssp             ECTTSCCSCGGGSCCTTCTTCCE-EECCSSCCC-CCCCC-TTCCCTTCCEEECCSSCCCEECHHHHHTTTTCCSEEEECT
T ss_pred             eccccCcccCCcchhccCCcccE-EECCCCccc-ccCcc-cccCCcccCEEEcccCcccccChhhhhhhcccceeEEecC
Confidence            9999998886 466788888888 999888888 44211 445588888888888876555455566666666  56666


Q ss_pred             CCCCcccc------------------------------------------------------------------------
Q 037308          163 GCSKLKRL------------------------------------------------------------------------  170 (321)
Q Consensus       163 ~~~~~~~~------------------------------------------------------------------------  170 (321)
                      +|...+..                                                                        
T Consensus       188 ~n~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~l~~l~~~~~~~~~~~~i~~~~~~~l~~~~L~~L~l~~n~l~  267 (606)
T 3t6q_A          188 GNDIAGIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFF  267 (606)
T ss_dssp             TCCCCEECTTTTTTCEEEEEECTTCSCHHHHHHHTTTCEEEEEECCCCTTSCCCCCCGGGGGGGGGSEEEEEECTTCCCS
T ss_pred             CCccCccChhHhhhccccccccCCchhHHHHhhhccccchhheechhhccccccccChhHhchhhcCceeEEEeecCccC
Confidence            54322111                                                                        


Q ss_pred             --cc---cccCCccEEEeccccccccChhhhccCCCCeEecccCcccccccccccCCCCCCEEEecCCCCCCcccc-ccC
Q 037308          171 --LE---ISSGNINWLFLRETAIEELPSSIERLLRLGHLDLSDCKRLKSLPSSLFKLKSLGVLNLGGCSNLQRLPE-CLG  244 (321)
Q Consensus       171 --~~---~~~~~L~~L~l~~~~i~~l~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~-~~~  244 (321)
                        +.   ..+++|++|++++|.++++|..+..+++|++|++++|.+.+..+..+..+++|+.|++++|.+.+.++. .+.
T Consensus       268 ~~~~~~~~~l~~L~~L~l~~n~l~~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~  347 (606)
T 3t6q_A          268 NISSNTFHCFSGLQELDLTATHLSELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLE  347 (606)
T ss_dssp             SCCTTTTTTCTTCSEEECTTSCCSCCCSSCCSCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEECCSCSSCCBCCSSTTT
T ss_pred             ccCHHHhccccCCCEEeccCCccCCCChhhcccccCCEEECccCCcCcCchhhhhccCcCCEEECCCCCcccccchhhhh
Confidence              11   024567777777777777776677777777777777776666566666667777777776665544433 355


Q ss_pred             CCCCCcEEEcccCCCccc---chhhhccCCcCEEeccCC
Q 037308          245 QLSSPIILNLAKTNVERI---PESIIQLFVLRYLLLSYS  280 (321)
Q Consensus       245 ~~~~L~~L~l~~n~l~~l---~~~l~~l~~L~~L~l~~n  280 (321)
                      .+++|+.|++++|.++.+   +..+..+++|++|++++|
T Consensus       348 ~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n  386 (606)
T 3t6q_A          348 NLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYN  386 (606)
T ss_dssp             TCTTCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSC
T ss_pred             ccCcCCEEECCCCccccccCcchhcccCCCCCEEECCCC
Confidence            666666666666666533   344555666666666666

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=99.95  E-value=1.1e-27  Score=221.61  Aligned_cols=269  Identities=17%  Similarity=0.129  Sum_probs=206.5

Q ss_pred             eecCchhhh-ccChhhhcCCCCceEEEEeecCCCCccccceeccCCCCc-CcccEEEecCCCCCC-CCCc--C-CcCcee
Q 037308           10 LDMSTVKEI-RLNLSTFTKMPKLRFLKFYSSSFNGENKCKVSYLQDPRF-AEVKYFHWHGYPLKS-LPSN--L-SAEKLV   83 (321)
Q Consensus        10 l~~~~~~~~-~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~l~~-~~L~~l~l~~~~l~~-~~~~--~-~l~~L~   83 (321)
                      |+++++... ...+..|+.+++|++|++++|.++      ...+..+.. ++|++|++++|.+.. ++..  + .+++|+
T Consensus        59 L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~l~------~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~  132 (455)
T 3v47_A           59 LKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFL------QLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLE  132 (455)
T ss_dssp             EECCCCSTTCEECTTTTTTCTTCCEEECTTCTTC------EECTTTTTTCTTCCEEECTTSCCBTHHHHSSTTTTCTTCC
T ss_pred             EECcCCcccceECcccccccccCCEEeCCCCccC------ccChhhccCcccCCEEeCCCCCCCccccCcccccCcccCC
Confidence            344444332 455677888999999999988754      233455666 888888888888764 2221  3 688888


Q ss_pred             EEeccCCccccccc-C-CCCCCChHhHHhhccccccccCCCCCCCC----------------------------------
Q 037308           84 FLKVPYSDIEQLWN-G-EKHYSNLNQIINATCNKLIAKTPNPTLMP----------------------------------  127 (321)
Q Consensus        84 ~L~l~~~~l~~~~~-~-~~~l~~L~~~l~l~~~~l~~~~~~~~~~~----------------------------------  127 (321)
                      +|++++|.+..+.. . +..+++|+. ++++.|.+.+..+.  .+.                                  
T Consensus       133 ~L~L~~n~l~~~~~~~~~~~l~~L~~-L~L~~n~l~~~~~~--~l~~l~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~  209 (455)
T 3v47_A          133 MLVLRDNNIKKIQPASFFLNMRRFHV-LDLTFNKVKSICEE--DLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPF  209 (455)
T ss_dssp             EEECCSSBCCSCCCCGGGGGCTTCCE-EECTTCCBSCCCTT--TSGGGTTCEEEEEECTTCBCTTCSTTCTTHHHHCCTT
T ss_pred             EEECCCCccCccCcccccCCCCcccE-EeCCCCcccccChh--hhhccccccccccccccCcccccchhhcccccccccc
Confidence            88888888887643 2 667888888 88888887743332  222                                  


Q ss_pred             CCCCccEEEccCCCCCcccCcccc---------------------------------------CcccCcEEecCCCCCcc
Q 037308          128 HLNKLVILNLRGSKSLKSLPSGIF---------------------------------------NLEFLTKLDLSGCSKLK  168 (321)
Q Consensus       128 ~l~~L~~L~l~~n~~~~~~p~~l~---------------------------------------~l~~L~~L~l~~~~~~~  168 (321)
                      .+++|++|++++|.+.+..|..+.                                       ..++|+.|++++|...+
T Consensus       210 ~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~  289 (455)
T 3v47_A          210 KNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFA  289 (455)
T ss_dssp             TTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEECTTCTTTSCCTTCCSSCCCCTTTTGGGTTSCCCEEECCSSCCCE
T ss_pred             ccceeeeEecCCCcccccchhhhhccccccceeeEeeccccccccccchhhhccCcccccccccccCceEEEecCccccc
Confidence            346899999999876543332221                                       12578899999877655


Q ss_pred             ccccc--ccCCccEEEeccccccccC-hhhhccCCCCeEecccCcccccccccccCCCCCCEEEecCCCCCCccccccCC
Q 037308          169 RLLEI--SSGNINWLFLRETAIEELP-SSIERLLRLGHLDLSDCKRLKSLPSSLFKLKSLGVLNLGGCSNLQRLPECLGQ  245 (321)
Q Consensus       169 ~~~~~--~~~~L~~L~l~~~~i~~l~-~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~  245 (321)
                      ..+..  .+++|++|++++|.+++++ ..+..+++|++|++++|.+.+..+..++.+++|+.|++++|.+.+..|..+..
T Consensus       290 ~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~  369 (455)
T 3v47_A          290 LLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLG  369 (455)
T ss_dssp             ECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGGTTCTTCCEEECCSSCCCEECTTTTTT
T ss_pred             cchhhcccCCCCCEEECCCCcccccChhHhcCcccCCEEECCCCccCCcChhHhcCcccCCEEECCCCcccccChhhccc
Confidence            55543  5789999999999999975 57889999999999999988888888999999999999999998888889999


Q ss_pred             CCCCcEEEcccCCCcccch-hhhccCCcCEEeccCCCCccccc
Q 037308          246 LSSPIILNLAKTNVERIPE-SIIQLFVLRYLLLSYSERIQSVS  287 (321)
Q Consensus       246 ~~~L~~L~l~~n~l~~l~~-~l~~l~~L~~L~l~~n~~l~~~~  287 (321)
                      +++|+.|++++|+++.+|. .+..+++|++|++++|+.-.++|
T Consensus       370 l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~  412 (455)
T 3v47_A          370 LPNLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP  412 (455)
T ss_dssp             CTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTT
T ss_pred             cccccEEECCCCccccCCHhHhccCCcccEEEccCCCcccCCC
Confidence            9999999999999998885 56889999999999996655554

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=99.95  E-value=6.7e-27  Score=224.05  Aligned_cols=282  Identities=16%  Similarity=0.131  Sum_probs=218.9

Q ss_pred             EeecCchhhhccChhhhcCCCCceEEEEeecCCCCccccceeccCCCCc-CcccEEEecCCCCCCCCC-cC-CcCceeEE
Q 037308            9 CLDMSTVKEIRLNLSTFTKMPKLRFLKFYSSSFNGENKCKVSYLQDPRF-AEVKYFHWHGYPLKSLPS-NL-SAEKLVFL   85 (321)
Q Consensus         9 ~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~l~~-~~L~~l~l~~~~l~~~~~-~~-~l~~L~~L   85 (321)
                      .++++++......+..++.+++|++|++++|.++       ..+..+.. ++|++|++++|.+..++. .+ .+++|++|
T Consensus       258 ~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-------~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L  330 (606)
T 3t6q_A          258 SINLQKHYFFNISSNTFHCFSGLQELDLTATHLS-------ELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHL  330 (606)
T ss_dssp             EEECTTCCCSSCCTTTTTTCTTCSEEECTTSCCS-------CCCSSCCSCTTCCEEECTTCCCSBGGGGCGGGCTTCSEE
T ss_pred             EEEeecCccCccCHHHhccccCCCEEeccCCccC-------CCChhhcccccCCEEECccCCcCcCchhhhhccCcCCEE
Confidence            3455666666677777899999999999998754       33445555 899999999998877644 33 78899999


Q ss_pred             eccCCccc-cccc-CCCCCCChHhHHhhccccccccC--CCCCCCCCCCCccEEEccCCCCCcccCccccCcccCcEEec
Q 037308           86 KVPYSDIE-QLWN-GEKHYSNLNQIINATCNKLIAKT--PNPTLMPHLNKLVILNLRGSKSLKSLPSGIFNLEFLTKLDL  161 (321)
Q Consensus        86 ~l~~~~l~-~~~~-~~~~l~~L~~~l~l~~~~l~~~~--~~~~~~~~l~~L~~L~l~~n~~~~~~p~~l~~l~~L~~L~l  161 (321)
                      ++++|.+. .++. .+..+++|+. ++++.|.+.+..  +.  .+..+++|++|++++|.+.+..|..+..+++|+.|++
T Consensus       331 ~l~~n~~~~~~~~~~~~~l~~L~~-L~l~~n~l~~~~~~~~--~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l  407 (606)
T 3t6q_A          331 SIKGNTKRLELGTGCLENLENLRE-LDLSHDDIETSDCCNL--QLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDL  407 (606)
T ss_dssp             ECCSCSSCCBCCSSTTTTCTTCCE-EECCSSCCCEEEESTT--TTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEEC
T ss_pred             ECCCCCcccccchhhhhccCcCCE-EECCCCccccccCcch--hcccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEEC
Confidence            99998876 3443 3678888888 999888887333  44  6888999999999999877677777888999999999


Q ss_pred             CCCCCccccccc---ccCCccEEEecccccccc-ChhhhccCCCCeEecccCccccc---ccccccCCCCCCEEEecCCC
Q 037308          162 SGCSKLKRLLEI---SSGNINWLFLRETAIEEL-PSSIERLLRLGHLDLSDCKRLKS---LPSSLFKLKSLGVLNLGGCS  234 (321)
Q Consensus       162 ~~~~~~~~~~~~---~~~~L~~L~l~~~~i~~l-~~~~~~l~~L~~L~l~~n~~~~~---~~~~~~~l~~L~~L~l~~~~  234 (321)
                      ++|...+..+..   .+++|++|++++|.+... |..+..+++|++|++++|.+.+.   .+..+..+++|+.|++++|.
T Consensus       408 ~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~  487 (606)
T 3t6q_A          408 AFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCD  487 (606)
T ss_dssp             TTCCEECCTTCCTTTTCTTCCEEECTTCCCBTTCTTTTTTCTTCCEEECTTCBCGGGEECSSCGGGGCTTCCEEECTTSC
T ss_pred             CCCcCCCcccchhhhCcccCCEEECCCCccCCcCHHHHhCCCCCCEEECCCCCCCccccccchhhccCCCccEEECCCCc
Confidence            987655443322   477899999999998875 45678889999999999987762   22457889999999999998


Q ss_pred             CCCccccccCCCCCCcEEEcccCCCc-ccchhhhccCCcCEEeccCCCCccccc-----CccccccccccccCc
Q 037308          235 NLQRLPECLGQLSSPIILNLAKTNVE-RIPESIIQLFVLRYLLLSYSERIQSVS-----LPLARGILEDTQRSP  302 (321)
Q Consensus       235 ~~~~~~~~~~~~~~L~~L~l~~n~l~-~l~~~l~~l~~L~~L~l~~n~~l~~~~-----~~~~l~~l~~~~~~~  302 (321)
                      +.+..|..+..+++|+.|++++|+++ ..|..+..++.| +|++++| .++.++     ..++++.+++.++.-
T Consensus       488 l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L-~L~L~~N-~l~~~~~~~~~~l~~L~~L~l~~N~~  559 (606)
T 3t6q_A          488 LSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGI-YLNLASN-HISIILPSLLPILSQQRTINLRQNPL  559 (606)
T ss_dssp             CCEECTTTTTTCTTCCEEECCSSCCCGGGGGGGTTCCSC-EEECCSS-CCCCCCGGGHHHHHTSSEEECTTCCE
T ss_pred             cCccChhhhccccCCCEEECCCCccCcCChhHhCccccc-EEECcCC-cccccCHhhcccCCCCCEEeCCCCCc
Confidence            88888888899999999999999998 455688888999 9999999 666654     235677888877443

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=99.95  E-value=8.8e-27  Score=208.22  Aligned_cols=237  Identities=18%  Similarity=0.150  Sum_probs=133.9

Q ss_pred             hhcCCCCceEEEEeecCCCCccccceeccCCCCc-CcccEEEecCCCCCCCCCcCCcCceeEEeccCCcccccccCCCCC
Q 037308           24 TFTKMPKLRFLKFYSSSFNGENKCKVSYLQDPRF-AEVKYFHWHGYPLKSLPSNLSAEKLVFLKVPYSDIEQLWNGEKHY  102 (321)
Q Consensus        24 ~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~l~~-~~L~~l~l~~~~l~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~l  102 (321)
                      .+..+++|++|++++|.+++.       +. +.. ++|++|++++|.+..++....+++|++|++++|.+..++. +..+
T Consensus        61 ~~~~~~~L~~L~l~~n~i~~~-------~~-~~~l~~L~~L~L~~n~i~~~~~~~~l~~L~~L~l~~n~i~~~~~-~~~l  131 (347)
T 4fmz_A           61 GIEYLTNLEYLNLNGNQITDI-------SP-LSNLVKLTNLYIGTNKITDISALQNLTNLRELYLNEDNISDISP-LANL  131 (347)
T ss_dssp             TGGGCTTCCEEECCSSCCCCC-------GG-GTTCTTCCEEECCSSCCCCCGGGTTCTTCSEEECTTSCCCCCGG-GTTC
T ss_pred             hhhhcCCccEEEccCCccccc-------hh-hhcCCcCCEEEccCCcccCchHHcCCCcCCEEECcCCcccCchh-hccC
Confidence            477788888888888875432       11 444 7888888888887777654478888888888888777654 6677


Q ss_pred             CChHhHHhhccccccccCCCCCCCCCCCCccEEEccCCCCCcccCccccCcccCcEEecCCCCCcccccccccC------
Q 037308          103 SNLNQIINATCNKLIAKTPNPTLMPHLNKLVILNLRGSKSLKSLPSGIFNLEFLTKLDLSGCSKLKRLLEISSG------  176 (321)
Q Consensus       103 ~~L~~~l~l~~~~l~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~l~~l~~L~~L~l~~~~~~~~~~~~~~~------  176 (321)
                      ++|+. ++++.|......+   .+..+++|++|++++|.+. ..+. +..+++|+.|++++|......+...++      
T Consensus       132 ~~L~~-L~l~~n~~~~~~~---~~~~l~~L~~L~l~~~~~~-~~~~-~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~  205 (347)
T 4fmz_A          132 TKMYS-LNLGANHNLSDLS---PLSNMTGLNYLTVTESKVK-DVTP-IANLTDLYSLSLNYNQIEDISPLASLTSLHYFT  205 (347)
T ss_dssp             TTCCE-EECTTCTTCCCCG---GGTTCTTCCEEECCSSCCC-CCGG-GGGCTTCSEEECTTSCCCCCGGGGGCTTCCEEE
T ss_pred             CceeE-EECCCCCCccccc---chhhCCCCcEEEecCCCcC-Cchh-hccCCCCCEEEccCCcccccccccCCCccceee
Confidence            77777 7776664431332   4666667777777766533 3332 556666666666665432221111244      


Q ss_pred             ----------------CccEEEeccccccccChhhhccCCCCeEecccCcccccccccccCCCCCCEEEecCCCCCCccc
Q 037308          177 ----------------NINWLFLRETAIEELPSSIERLLRLGHLDLSDCKRLKSLPSSLFKLKSLGVLNLGGCSNLQRLP  240 (321)
Q Consensus       177 ----------------~L~~L~l~~~~i~~l~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~  240 (321)
                                      +|++|++++|.+++++. +..+++|++|++++|.+.+.  ..+..+++|+.|++++|.+.+.  
T Consensus       206 l~~n~l~~~~~~~~~~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~l~~n~l~~~--  280 (347)
T 4fmz_A          206 AYVNQITDITPVANMTRLNSLKIGNNKITDLSP-LANLSQLTWLEIGTNQISDI--NAVKDLTKLKMLNVGSNQISDI--  280 (347)
T ss_dssp             CCSSCCCCCGGGGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCCC--GGGTTCTTCCEEECCSSCCCCC--
T ss_pred             cccCCCCCCchhhcCCcCCEEEccCCccCCCcc-hhcCCCCCEEECCCCccCCC--hhHhcCCCcCEEEccCCccCCC--
Confidence                            44455555554444443 44444555555555443332  2344455555555555443332  


Q ss_pred             cccCCCCCCcEEEcccCCCccc-chhhhccCCcCEEeccCC
Q 037308          241 ECLGQLSSPIILNLAKTNVERI-PESIIQLFVLRYLLLSYS  280 (321)
Q Consensus       241 ~~~~~~~~L~~L~l~~n~l~~l-~~~l~~l~~L~~L~l~~n  280 (321)
                      ..+..+++|+.|++++|.++.. +..+..+++|++|++++|
T Consensus       281 ~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n  321 (347)
T 4fmz_A          281 SVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQN  321 (347)
T ss_dssp             GGGGGCTTCSEEECCSSCCCGGGHHHHHTCTTCSEEECCSS
T ss_pred             hhhcCCCCCCEEECcCCcCCCcChhHhhccccCCEEEccCC
Confidence            2344555555555555555522 234455555555555555

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=99.95  E-value=1.1e-27  Score=212.63  Aligned_cols=218  Identities=24%  Similarity=0.314  Sum_probs=160.1

Q ss_pred             CcccEEEecCCCCCCCCCcC-CcCceeEEeccCCcccccccCCCCCCChHhHHhhccccccccCCCCCCCCCCCCccEEE
Q 037308           58 AEVKYFHWHGYPLKSLPSNL-SAEKLVFLKVPYSDIEQLWNGEKHYSNLNQIINATCNKLIAKTPNPTLMPHLNKLVILN  136 (321)
Q Consensus        58 ~~L~~l~l~~~~l~~~~~~~-~l~~L~~L~l~~~~l~~~~~~~~~l~~L~~~l~l~~~~l~~~~~~~~~~~~l~~L~~L~  136 (321)
                      .+++.|+++++.+..+|..+ .+++|++|++++|.++.++..+..+++|+. ++++.|.++ .+|.  .+..+++|++|+
T Consensus        81 ~~l~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~-L~Ls~n~l~-~lp~--~l~~l~~L~~L~  156 (328)
T 4fcg_A           81 PGRVALELRSVPLPQFPDQAFRLSHLQHMTIDAAGLMELPDTMQQFAGLET-LTLARNPLR-ALPA--SIASLNRLRELS  156 (328)
T ss_dssp             TTCCEEEEESSCCSSCCSCGGGGTTCSEEEEESSCCCCCCSCGGGGTTCSE-EEEESCCCC-CCCG--GGGGCTTCCEEE
T ss_pred             cceeEEEccCCCchhcChhhhhCCCCCEEECCCCCccchhHHHhccCCCCE-EECCCCccc-cCcH--HHhcCcCCCEEE
Confidence            67777777777777777765 677778888877777777766777777777 777777777 6665  677778888888


Q ss_pred             ccCCCCCcccCccccC---------cccCcEEecCCCCCccccccc--ccCCccEEEeccccccccChhhhccCCCCeEe
Q 037308          137 LRGSKSLKSLPSGIFN---------LEFLTKLDLSGCSKLKRLLEI--SSGNINWLFLRETAIEELPSSIERLLRLGHLD  205 (321)
Q Consensus       137 l~~n~~~~~~p~~l~~---------l~~L~~L~l~~~~~~~~~~~~--~~~~L~~L~l~~~~i~~l~~~~~~l~~L~~L~  205 (321)
                      +++|.+.+.+|..+..         +++|++|++++|... .+|..  .+++|++|++++|.++++|..+..+++|++|+
T Consensus       157 L~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~N~l~~l~~~l~~l~~L~~L~  235 (328)
T 4fcg_A          157 IRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLSALGPAIHHLPKLEELD  235 (328)
T ss_dssp             EEEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCC-CCCGGGGGCTTCCEEEEESSCCCCCCGGGGGCTTCCEEE
T ss_pred             CCCCCCccccChhHhhccchhhhccCCCCCEEECcCCCcC-cchHhhcCCCCCCEEEccCCCCCcCchhhccCCCCCEEE
Confidence            8887777777765543         677777777775433 44433  45677777777777777777777777778888


Q ss_pred             cccCcccccccccccCCCCCCEEEecCCCCCCccccccCCCCCCcEEEcccCCCc-ccchhhhccCCcCEEeccCC
Q 037308          206 LSDCKRLKSLPSSLFKLKSLGVLNLGGCSNLQRLPECLGQLSSPIILNLAKTNVE-RIPESIIQLFVLRYLLLSYS  280 (321)
Q Consensus       206 l~~n~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~-~l~~~l~~l~~L~~L~l~~n  280 (321)
                      +++|.+.+.+|..++.+++|+.|++++|+..+.+|..+..+++|+.|++++|.+. .+|..+..+++|+.+++..+
T Consensus       236 Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l~~L~~L~~l~l~~~  311 (328)
T 4fcg_A          236 LRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPH  311 (328)
T ss_dssp             CTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCCGGGGGSCTTCEEECCGG
T ss_pred             CcCCcchhhhHHHhcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhccHHHhhccCceEEeCCHH
Confidence            8777777777777777777888888777777777777777777888888777655 77777777777777777765

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=99.95  E-value=1e-27  Score=226.99  Aligned_cols=282  Identities=17%  Similarity=0.147  Sum_probs=204.5

Q ss_pred             eecCchhhhccChhhhcCCCCceEEEEeecCCCCccccceeccCCCCc-CcccEEEecCCCCCCCCCc-C-CcCceeEEe
Q 037308           10 LDMSTVKEIRLNLSTFTKMPKLRFLKFYSSSFNGENKCKVSYLQDPRF-AEVKYFHWHGYPLKSLPSN-L-SAEKLVFLK   86 (321)
Q Consensus        10 l~~~~~~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~l~~-~~L~~l~l~~~~l~~~~~~-~-~l~~L~~L~   86 (321)
                      ||++++......+..++.+++|++|++++|.++      ...+..+.. ++|++|++++|.+..++.. + .+++|++|+
T Consensus        31 L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~------~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~  104 (549)
T 2z81_A           31 LDLSFNKITYIGHGDLRACANLQVLILKSSRIN------TIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLN  104 (549)
T ss_dssp             EECCSSCCCEECSSTTSSCTTCCEEECTTSCCC------EECTTTTTTCTTCCEEECTTSCCCSCCHHHHTTCTTCCEEE
T ss_pred             EECcCCccCccChhhhhcCCcccEEECCCCCcC------ccChhhccccccCCEEECCCCccCccCHHHhccCCCCcEEE
Confidence            455666555666678999999999999999754      233345666 8999999999999888775 4 799999999


Q ss_pred             ccCCccccc--ccCCCCCCChHhHHhhccccccccCCCCCCCCCCCCccEEEccCCCCCcccCccccCcc----------
Q 037308           87 VPYSDIEQL--WNGEKHYSNLNQIINATCNKLIAKTPNPTLMPHLNKLVILNLRGSKSLKSLPSGIFNLE----------  154 (321)
Q Consensus        87 l~~~~l~~~--~~~~~~l~~L~~~l~l~~~~l~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~l~~l~----------  154 (321)
                      +++|.++.+  +..+..+++|+. ++++.|.+.+.++. ..+..+++|++|++++|.+.+..|..+..++          
T Consensus       105 Ls~n~l~~~~~~~~~~~l~~L~~-L~L~~n~~~~~~~~-~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n  182 (549)
T 2z81_A          105 LMGNPYQTLGVTSLFPNLTNLQT-LRIGNVETFSEIRR-IDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLS  182 (549)
T ss_dssp             CTTCCCSSSCSSCSCTTCTTCCE-EEEEESSSCCEECT-TTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECS
T ss_pred             CCCCcccccchhhhhhccCCccE-EECCCCccccccCH-hhhhcccccCeeeccCCcccccChhhhhccccCceEecccC
Confidence            999999854  467788889998 99988874336552 2688899999999999887766676665544          


Q ss_pred             --------------cCcEEecCCCCCcccc--cc----------------------------------------------
Q 037308          155 --------------FLTKLDLSGCSKLKRL--LE----------------------------------------------  172 (321)
Q Consensus       155 --------------~L~~L~l~~~~~~~~~--~~----------------------------------------------  172 (321)
                                    +|++|++++|...+..  +.                                              
T Consensus       183 ~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~L~~l~l~~~~  262 (549)
T 2z81_A          183 ESAFLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEFDDCT  262 (549)
T ss_dssp             BSTTHHHHHHHSTTTBSEEEEESCBCTTCCCCCCSSCCCCCCCCEEEEESCEEEHHHHHHHHGGGGGCTTCCEEEEESCE
T ss_pred             cccccchhhHhhcccccEEEccCCccccccccccchhhhhhcccceeccccccchhHHHHHHHHhhhhcccccccccccc
Confidence                          4555555444322100  00                                              


Q ss_pred             --------------------------------------------cccCCccEEEeccccccccChhh-hccCCCCeEecc
Q 037308          173 --------------------------------------------ISSGNINWLFLRETAIEELPSSI-ERLLRLGHLDLS  207 (321)
Q Consensus       173 --------------------------------------------~~~~~L~~L~l~~~~i~~l~~~~-~~l~~L~~L~l~  207 (321)
                                                                  ...++|+.|++++|.++.+|..+ ..+++|++|+++
T Consensus       263 ~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~l~~~~~~~~~L~~L~l~~n~l~~ip~~~~~~l~~L~~L~Ls  342 (549)
T 2z81_A          263 LNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVFLVPCSFSQHLKSLEFLDLS  342 (549)
T ss_dssp             EECCSCCCCCTTTCCCCCTTCCEEEEESCBCSCGGGSCCCCHHHHHSTTCCEEEEESSCCCCCCHHHHHHCTTCCEEECC
T ss_pred             ccccccccccchhhhhhhcccccccccccccchhhhcccchhhhhhcccceEEEeccCccccCCHHHHhcCccccEEEcc
Confidence                                                        00134566666666666677655 468889999999


Q ss_pred             cCccccccc---ccccCCCCCCEEEecCCCCCCccc--cccCCCCCCcEEEcccCCCcccchhhhccCCcCEEeccCCCC
Q 037308          208 DCKRLKSLP---SSLFKLKSLGVLNLGGCSNLQRLP--ECLGQLSSPIILNLAKTNVERIPESIIQLFVLRYLLLSYSER  282 (321)
Q Consensus       208 ~n~~~~~~~---~~~~~l~~L~~L~l~~~~~~~~~~--~~~~~~~~L~~L~l~~n~l~~l~~~l~~l~~L~~L~l~~n~~  282 (321)
                      +|.+.+..|   ..++.+++|+.|++++|.+.+..+  ..+..+++|+.|++++|+++.+|..+..+++|++|++++| .
T Consensus       343 ~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~~~~L~~L~Ls~N-~  421 (549)
T 2z81_A          343 ENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFHPMPDSCQWPEKMRFLNLSST-G  421 (549)
T ss_dssp             SSCCCHHHHHHHTCTTSSTTCCEEECTTSCCCCHHHHHHHGGGCTTCCEEECTTCCCCCCCSCCCCCTTCCEEECTTS-C
T ss_pred             CCccccccccchhhhhccccCcEEEccCCcccccccchhhhhcCCCCCEEECCCCCCccCChhhcccccccEEECCCC-C
Confidence            888877654   236788889999998887765432  4577888899999999988888887778888888888888 6


Q ss_pred             ccccc--Ccccccccccccc
Q 037308          283 IQSVS--LPLARGILEDTQR  300 (321)
Q Consensus       283 l~~~~--~~~~l~~l~~~~~  300 (321)
                      ++.++  .|++++.|+++++
T Consensus       422 l~~l~~~~~~~L~~L~Ls~N  441 (549)
T 2z81_A          422 IRVVKTCIPQTLEVLDVSNN  441 (549)
T ss_dssp             CSCCCTTSCTTCSEEECCSS
T ss_pred             cccccchhcCCceEEECCCC
Confidence            77776  6667777776665

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=99.95  E-value=2.4e-28  Score=215.55  Aligned_cols=217  Identities=19%  Similarity=0.233  Sum_probs=105.1

Q ss_pred             cccEEEecCCCCC---CCCCcC-CcCceeEEeccC-Cccc-ccccCCCCCCChHhHHhhccccccccCCCCCCCCCCCCc
Q 037308           59 EVKYFHWHGYPLK---SLPSNL-SAEKLVFLKVPY-SDIE-QLWNGEKHYSNLNQIINATCNKLIAKTPNPTLMPHLNKL  132 (321)
Q Consensus        59 ~L~~l~l~~~~l~---~~~~~~-~l~~L~~L~l~~-~~l~-~~~~~~~~l~~L~~~l~l~~~~l~~~~~~~~~~~~l~~L  132 (321)
                      +++.++++++.+.   .+|..+ .+++|++|++++ |.+. .++..+..+++|+. ++++.|.+++.+|.  .+..+++|
T Consensus        51 ~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~-L~Ls~n~l~~~~p~--~~~~l~~L  127 (313)
T 1ogq_A           51 RVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHY-LYITHTNVSGAIPD--FLSQIKTL  127 (313)
T ss_dssp             CEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSE-EEEEEECCEEECCG--GGGGCTTC
T ss_pred             eEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCE-EECcCCeeCCcCCH--HHhCCCCC
Confidence            4445555554443   233333 445555555542 4443 23334444455555 55555555444443  44555555


Q ss_pred             cEEEccCCCCCcccCccccCcccCcEEecCCCCCccccccc--ccC-CccEEEeccccccc-cChhhhccCCCCeEeccc
Q 037308          133 VILNLRGSKSLKSLPSGIFNLEFLTKLDLSGCSKLKRLLEI--SSG-NINWLFLRETAIEE-LPSSIERLLRLGHLDLSD  208 (321)
Q Consensus       133 ~~L~l~~n~~~~~~p~~l~~l~~L~~L~l~~~~~~~~~~~~--~~~-~L~~L~l~~~~i~~-l~~~~~~l~~L~~L~l~~  208 (321)
                      ++|++++|.+.+.+|..+..+++|++|++++|...+.+|..  .+. +|++|++++|.+++ +|..+..+. |++|++++
T Consensus       128 ~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~-L~~L~Ls~  206 (313)
T 1ogq_A          128 VTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSR  206 (313)
T ss_dssp             CEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCC-CSEEECCS
T ss_pred             CEEeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCCc-ccEEECcC
Confidence            55555555544444444555555555555554433333322  122 45555555555542 444444443 55555555


Q ss_pred             CcccccccccccCCCCCCEEEecCCCCCCccccccCCCCCCcEEEcccCCCc-ccchhhhccCCcCEEeccCC
Q 037308          209 CKRLKSLPSSLFKLKSLGVLNLGGCSNLQRLPECLGQLSSPIILNLAKTNVE-RIPESIIQLFVLRYLLLSYS  280 (321)
Q Consensus       209 n~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~-~l~~~l~~l~~L~~L~l~~n  280 (321)
                      |.+.+..+..+..+++|+.|++++|.+.+..+. +..+++|+.|++++|.++ .+|..+..+++|++|++++|
T Consensus       207 N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~-~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N  278 (313)
T 1ogq_A          207 NMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGK-VGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFN  278 (313)
T ss_dssp             SEEEECCGGGCCTTSCCSEEECCSSEECCBGGG-CCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSS
T ss_pred             CcccCcCCHHHhcCCCCCEEECCCCceeeecCc-ccccCCCCEEECcCCcccCcCChHHhcCcCCCEEECcCC
Confidence            555544455555555555555555544444332 444555555555555555 44555555555555555555

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=99.95  E-value=3.4e-27  Score=227.26  Aligned_cols=267  Identities=16%  Similarity=0.168  Sum_probs=218.3

Q ss_pred             CceEEEEeecCchhhhccCh-hhhcCCCCceEEEEeecCCCCccccceeccCCCCc-CcccEEEecCCCCCCCCCcC-Cc
Q 037308            3 KKIEGICLDMSTVKEIRLNL-STFTKMPKLRFLKFYSSSFNGENKCKVSYLQDPRF-AEVKYFHWHGYPLKSLPSNL-SA   79 (321)
Q Consensus         3 ~~~~~~~l~~~~~~~~~~~~-~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~l~~-~~L~~l~l~~~~l~~~~~~~-~l   79 (321)
                      ++++.+.+  +++....++. ..++.+++|++|++++|.++|.      .+ .+.. ++|+.|++++|.+..+|..+ .+
T Consensus       305 ~~L~~L~L--~~n~l~~ip~~~~l~~l~~L~~L~L~~N~l~g~------ip-~~~~l~~L~~L~L~~N~l~~lp~~l~~l  375 (636)
T 4eco_A          305 EKIQIIYI--GYNNLKTFPVETSLQKMKKLGMLECLYNQLEGK------LP-AFGSEIKLASLNLAYNQITEIPANFCGF  375 (636)
T ss_dssp             GTCCEEEC--CSSCCSSCCCHHHHTTCTTCCEEECCSCCCEEE------CC-CCEEEEEESEEECCSSEEEECCTTSEEE
T ss_pred             CCCCEEEC--CCCcCCccCchhhhccCCCCCEEeCcCCcCccc------hh-hhCCCCCCCEEECCCCccccccHhhhhh
Confidence            34444444  3443333332 2788999999999999985533      33 4555 99999999999999998877 78


Q ss_pred             Cc-eeEEeccCCcccccccCCCCCC--ChHhHHhhccccccccCCCCCCCC-------CCCCccEEEccCCCCCcccCcc
Q 037308           80 EK-LVFLKVPYSDIEQLWNGEKHYS--NLNQIINATCNKLIAKTPNPTLMP-------HLNKLVILNLRGSKSLKSLPSG  149 (321)
Q Consensus        80 ~~-L~~L~l~~~~l~~~~~~~~~l~--~L~~~l~l~~~~l~~~~~~~~~~~-------~l~~L~~L~l~~n~~~~~~p~~  149 (321)
                      ++ |++|++++|.++.++..+....  +|+. ++++.|.+.+..|.  .+.       .+++|++|++++|.+. .+|..
T Consensus       376 ~~~L~~L~Ls~N~l~~lp~~~~~~~l~~L~~-L~Ls~N~l~~~~p~--~l~~~~~~~~~~~~L~~L~Ls~N~l~-~lp~~  451 (636)
T 4eco_A          376 TEQVENLSFAHNKLKYIPNIFDAKSVSVMSA-IDFSYNEIGSVDGK--NFDPLDPTPFKGINVSSINLSNNQIS-KFPKE  451 (636)
T ss_dssp             CTTCCEEECCSSCCSSCCSCCCTTCSSCEEE-EECCSSCTTTTTTC--SSCTTCSSCCCCCCEEEEECCSSCCC-SCCTH
T ss_pred             cccCcEEEccCCcCcccchhhhhcccCccCE-EECcCCcCCCcchh--hhcccccccccCCCCCEEECcCCccC-cCCHH
Confidence            88 9999999999998887766544  8999 99999999977765  666       7889999999999855 66654


Q ss_pred             -ccCcccCcEEecCCCCCcccccccccC----------CccEEEeccccccccChhhh--ccCCCCeEecccCccccccc
Q 037308          150 -IFNLEFLTKLDLSGCSKLKRLLEISSG----------NINWLFLRETAIEELPSSIE--RLLRLGHLDLSDCKRLKSLP  216 (321)
Q Consensus       150 -l~~l~~L~~L~l~~~~~~~~~~~~~~~----------~L~~L~l~~~~i~~l~~~~~--~l~~L~~L~l~~n~~~~~~~  216 (321)
                       +..+++|+.|++++|... .+|...+.          +|+.|++++|.++.+|..+.  .+++|++|++++|.+.+ +|
T Consensus       452 ~~~~l~~L~~L~Ls~N~l~-~i~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~~~l~~L~~L~Ls~N~l~~-ip  529 (636)
T 4eco_A          452 LFSTGSPLSSINLMGNMLT-EIPKNSLKDENENFKNTYLLTSIDLRFNKLTKLSDDFRATTLPYLVGIDLSYNSFSK-FP  529 (636)
T ss_dssp             HHHTTCCCSEEECCSSCCS-BCCSSSSEETTEECTTGGGCCEEECCSSCCCBCCGGGSTTTCTTCCEEECCSSCCSS-CC
T ss_pred             HHccCCCCCEEECCCCCCC-CcCHHHhccccccccccCCccEEECcCCcCCccChhhhhccCCCcCEEECCCCCCCC-cC
Confidence             556999999999998655 56554222          89999999999999998876  99999999999999887 88


Q ss_pred             ccccCCCCCCEEEec------CCCCCCccccccCCCCCCcEEEcccCCCcccchhhhccCCcCEEeccCCCCccccc
Q 037308          217 SSLFKLKSLGVLNLG------GCSNLQRLPECLGQLSSPIILNLAKTNVERIPESIIQLFVLRYLLLSYSERIQSVS  287 (321)
Q Consensus       217 ~~~~~l~~L~~L~l~------~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~l~~~l~~l~~L~~L~l~~n~~l~~~~  287 (321)
                      ..++.+++|+.|+++      +|.+.+.+|..+..+++|+.|++++|+++.+|..+.  ++|++|++++| .+.++.
T Consensus       530 ~~~~~l~~L~~L~Ls~N~~ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~ip~~~~--~~L~~L~Ls~N-~l~~~~  603 (636)
T 4eco_A          530 TQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSNDIRKVNEKIT--PNISVLDIKDN-PNISID  603 (636)
T ss_dssp             CGGGGCSSCCEEECCSCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCCCBCCSCCC--TTCCEEECCSC-TTCEEE
T ss_pred             hhhhcCCCCCEEECCCCcccccCcccccChHHHhcCCCCCEEECCCCcCCccCHhHh--CcCCEEECcCC-CCcccc
Confidence            889999999999994      567788899999999999999999999999997655  89999999999 555544

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=99.95  E-value=8.5e-26  Score=201.81  Aligned_cols=255  Identities=17%  Similarity=0.205  Sum_probs=184.2

Q ss_pred             hhcCCCCceEEEEeecCCCCccccceeccCCCCc-CcccEEEecCCCCCCCCCcCCcCceeEEeccCCcccccccCCCCC
Q 037308           24 TFTKMPKLRFLKFYSSSFNGENKCKVSYLQDPRF-AEVKYFHWHGYPLKSLPSNLSAEKLVFLKVPYSDIEQLWNGEKHY  102 (321)
Q Consensus        24 ~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~l~~-~~L~~l~l~~~~l~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~l  102 (321)
                      .+.++++|++|++.++.+.        ..+.+.. ++|++|++++|.+..++....+++|++|++++|.++.++ .+..+
T Consensus        39 ~~~~l~~L~~L~l~~~~i~--------~~~~~~~~~~L~~L~l~~n~i~~~~~~~~l~~L~~L~L~~n~i~~~~-~~~~l  109 (347)
T 4fmz_A           39 TQEELESITKLVVAGEKVA--------SIQGIEYLTNLEYLNLNGNQITDISPLSNLVKLTNLYIGTNKITDIS-ALQNL  109 (347)
T ss_dssp             CHHHHTTCSEEECCSSCCC--------CCTTGGGCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCCCG-GGTTC
T ss_pred             cchhcccccEEEEeCCccc--------cchhhhhcCCccEEEccCCccccchhhhcCCcCCEEEccCCcccCch-HHcCC
Confidence            3556789999999998743        2234566 999999999999999887558999999999999999864 67899


Q ss_pred             CChHhHHhhccccccccCCCCCCCCCCCCccEEEccCCCCCcccCccccCcccCcEEecCCCCCcccccccccCCccEEE
Q 037308          103 SNLNQIINATCNKLIAKTPNPTLMPHLNKLVILNLRGSKSLKSLPSGIFNLEFLTKLDLSGCSKLKRLLEISSGNINWLF  182 (321)
Q Consensus       103 ~~L~~~l~l~~~~l~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~  182 (321)
                      ++|++ ++++.|.+. .++   .+..+++|++|++++|......+. +..+++|++|++++|......+...+++|+.|+
T Consensus       110 ~~L~~-L~l~~n~i~-~~~---~~~~l~~L~~L~l~~n~~~~~~~~-~~~l~~L~~L~l~~~~~~~~~~~~~l~~L~~L~  183 (347)
T 4fmz_A          110 TNLRE-LYLNEDNIS-DIS---PLANLTKMYSLNLGANHNLSDLSP-LSNMTGLNYLTVTESKVKDVTPIANLTDLYSLS  183 (347)
T ss_dssp             TTCSE-EECTTSCCC-CCG---GGTTCTTCCEEECTTCTTCCCCGG-GTTCTTCCEEECCSSCCCCCGGGGGCTTCSEEE
T ss_pred             CcCCE-EECcCCccc-Cch---hhccCCceeEEECCCCCCcccccc-hhhCCCCcEEEecCCCcCCchhhccCCCCCEEE
Confidence            99999 999999998 665   488999999999999976666555 889999999999998755443333688999999


Q ss_pred             eccccccccChhhhccCCCCeEecccCcccccccccccCCCCCCEEEecCCCCCCccccccCCCCCCcEEEcccCCCccc
Q 037308          183 LRETAIEELPSSIERLLRLGHLDLSDCKRLKSLPSSLFKLKSLGVLNLGGCSNLQRLPECLGQLSSPIILNLAKTNVERI  262 (321)
Q Consensus       183 l~~~~i~~l~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~l  262 (321)
                      +++|.+.+++. +..+++|+.+++++|.+.+..+  +..+++|+.|++++|.+.+..+  +..+++|+.|++++|.++.+
T Consensus       184 l~~n~l~~~~~-~~~l~~L~~L~l~~n~l~~~~~--~~~~~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~  258 (347)
T 4fmz_A          184 LNYNQIEDISP-LASLTSLHYFTAYVNQITDITP--VANMTRLNSLKIGNNKITDLSP--LANLSQLTWLEIGTNQISDI  258 (347)
T ss_dssp             CTTSCCCCCGG-GGGCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCC
T ss_pred             ccCCccccccc-ccCCCccceeecccCCCCCCch--hhcCCcCCEEEccCCccCCCcc--hhcCCCCCEEECCCCccCCC
Confidence            99999998775 6666677777777666554333  5566666666666655544322  55555666666666655554


Q ss_pred             chhhhccCCcCEEeccCCCCccccc---Ccccccccccccc
Q 037308          263 PESIIQLFVLRYLLLSYSERIQSVS---LPLARGILEDTQR  300 (321)
Q Consensus       263 ~~~l~~l~~L~~L~l~~n~~l~~~~---~~~~l~~l~~~~~  300 (321)
                      + .+..+++|++|++++| .++.++   ..++++.|++.++
T Consensus       259 ~-~~~~l~~L~~L~l~~n-~l~~~~~~~~l~~L~~L~L~~n  297 (347)
T 4fmz_A          259 N-AVKDLTKLKMLNVGSN-QISDISVLNNLSQLNSLFLNNN  297 (347)
T ss_dssp             G-GGTTCTTCCEEECCSS-CCCCCGGGGGCTTCSEEECCSS
T ss_pred             h-hHhcCCCcCEEEccCC-ccCCChhhcCCCCCCEEECcCC
Confidence            3 3455555555555555 444444   2344555555444

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=99.95  E-value=1.3e-26  Score=222.11  Aligned_cols=247  Identities=18%  Similarity=0.168  Sum_probs=131.0

Q ss_pred             hcCCCCceEEEEeecCCCCccccceeccCCCCc-CcccEEEecCCCCCCCCCc---------------------CCcCce
Q 037308           25 FTKMPKLRFLKFYSSSFNGENKCKVSYLQDPRF-AEVKYFHWHGYPLKSLPSN---------------------LSAEKL   82 (321)
Q Consensus        25 l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~l~~-~~L~~l~l~~~~l~~~~~~---------------------~~l~~L   82 (321)
                      +..+++|++|++.+|.+..        .+.+.. ++|+.+++++|.++.+|..                     ..+++|
T Consensus       281 ~~~l~~L~~L~l~~~~~~~--------l~~l~~~~~L~~L~l~~n~l~~lp~~~l~~L~~L~l~~n~~~~~~~~~~l~~L  352 (606)
T 3vq2_A          281 FHCLANVSAMSLAGVSIKY--------LEDVPKHFKWQSLSIIRCQLKQFPTLDLPFLKSLTLTMNKGSISFKKVALPSL  352 (606)
T ss_dssp             CGGGTTCSEEEEESCCCCC--------CCCCCTTCCCSEEEEESCCCSSCCCCCCSSCCEEEEESCSSCEECCCCCCTTC
T ss_pred             cccCCCCCEEEecCccchh--------hhhccccccCCEEEcccccCcccccCCCCccceeeccCCcCccchhhccCCCC
Confidence            5556666666666665321        113333 5566666666655555533                     134445


Q ss_pred             eEEeccCCccccc---ccCCCCCCChHhHHhhccccccccCCCCCCCCCCCCccEEEccCCCCCcccC-ccccCcccCcE
Q 037308           83 VFLKVPYSDIEQL---WNGEKHYSNLNQIINATCNKLIAKTPNPTLMPHLNKLVILNLRGSKSLKSLP-SGIFNLEFLTK  158 (321)
Q Consensus        83 ~~L~l~~~~l~~~---~~~~~~l~~L~~~l~l~~~~l~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p-~~l~~l~~L~~  158 (321)
                      ++|++++|.++..   +..+..+++|+. ++++.|.+. .++.  .+..+++|++|++++|.+.+..| ..+..+++|++
T Consensus       353 ~~L~ls~n~l~~~~~~~~~~~~~~~L~~-L~L~~n~l~-~~~~--~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~  428 (606)
T 3vq2_A          353 SYLDLSRNALSFSGCCSYSDLGTNSLRH-LDLSFNGAI-IMSA--NFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLY  428 (606)
T ss_dssp             CEEECCSSCEEEEEECCHHHHCCSCCCE-EECCSCSEE-EECC--CCTTCTTCCEEECTTSEEESTTTTTTTTTCTTCCE
T ss_pred             CEEECcCCccCCCcchhhhhccCCcccE-eECCCCccc-cchh--hccCCCCCCeeECCCCccCCccChhhhhccccCCE
Confidence            5555555554443   233344455555 555555555 3443  45555555555555555444433 34555555666


Q ss_pred             EecCCCCCccccccc--ccCCccEEEeccccccc--cChhhhccCCCCeEecccCcccccccccccCCCCCCEEEecCCC
Q 037308          159 LDLSGCSKLKRLLEI--SSGNINWLFLRETAIEE--LPSSIERLLRLGHLDLSDCKRLKSLPSSLFKLKSLGVLNLGGCS  234 (321)
Q Consensus       159 L~l~~~~~~~~~~~~--~~~~L~~L~l~~~~i~~--l~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~~~  234 (321)
                      |++++|...+..+..  .+++|++|++++|.+++  +|..+..+++|++|++++|.+.+..|..++.+++|+.|++++|+
T Consensus       429 L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~  508 (606)
T 3vq2_A          429 LDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNN  508 (606)
T ss_dssp             EECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSC
T ss_pred             EECcCCCCCccchhhhcCCCCCCEEECCCCcCCCcchHHhhccCCCCCEEECCCCcCCccChhhhcccccCCEEECCCCc
Confidence            666555443333322  34555566666555554  34445555566666666655555555555555666666666655


Q ss_pred             CCCccccccCCCCCCcEEEcccCCCcccchhhhccC-CcCEEeccCCCCc
Q 037308          235 NLQRLPECLGQLSSPIILNLAKTNVERIPESIIQLF-VLRYLLLSYSERI  283 (321)
Q Consensus       235 ~~~~~~~~~~~~~~L~~L~l~~n~l~~l~~~l~~l~-~L~~L~l~~n~~l  283 (321)
                      +.+..|..++.+++|+.|++++|+++.+|..+..++ +|++|++++|+..
T Consensus       509 l~~~~~~~~~~l~~L~~L~l~~N~l~~~p~~~~~l~~~L~~l~l~~N~~~  558 (606)
T 3vq2_A          509 LLFLDSSHYNQLYSLSTLDCSFNRIETSKGILQHFPKSLAFFNLTNNSVA  558 (606)
T ss_dssp             CSCEEGGGTTTCTTCCEEECTTSCCCCEESCGGGSCTTCCEEECCSCCCC
T ss_pred             CCCcCHHHccCCCcCCEEECCCCcCcccCHhHhhhcccCcEEEccCCCcc
Confidence            555555555555666666666666555555555554 3566666655443

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=99.94  E-value=7.5e-27  Score=207.24  Aligned_cols=221  Identities=24%  Similarity=0.289  Sum_probs=196.1

Q ss_pred             CcCceeEEeccCCcccccccCCCCCCChHhHHhhccccccccCCCCCCCCCCCCccEEEccCCCCCcccCccccCcccCc
Q 037308           78 SAEKLVFLKVPYSDIEQLWNGEKHYSNLNQIINATCNKLIAKTPNPTLMPHLNKLVILNLRGSKSLKSLPSGIFNLEFLT  157 (321)
Q Consensus        78 ~l~~L~~L~l~~~~l~~~~~~~~~l~~L~~~l~l~~~~l~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~l~~l~~L~  157 (321)
                      ..++++.|++++|.++.++..++.+++|+. ++++.|.++ .+|.  .+..+++|++|++++|.+. .+|..+..+++|+
T Consensus        79 ~~~~l~~L~L~~n~l~~lp~~l~~l~~L~~-L~L~~n~l~-~lp~--~~~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~  153 (328)
T 4fcg_A           79 TQPGRVALELRSVPLPQFPDQAFRLSHLQH-MTIDAAGLM-ELPD--TMQQFAGLETLTLARNPLR-ALPASIASLNRLR  153 (328)
T ss_dssp             TSTTCCEEEEESSCCSSCCSCGGGGTTCSE-EEEESSCCC-CCCS--CGGGGTTCSEEEEESCCCC-CCCGGGGGCTTCC
T ss_pred             cccceeEEEccCCCchhcChhhhhCCCCCE-EECCCCCcc-chhH--HHhccCCCCEEECCCCccc-cCcHHHhcCcCCC
Confidence            358899999999999999999999999999 999999999 8887  8999999999999999855 8898899999999


Q ss_pred             EEecCCCCCcccccccc-----------cCCccEEEeccccccccChhhhccCCCCeEecccCcccccccccccCCCCCC
Q 037308          158 KLDLSGCSKLKRLLEIS-----------SGNINWLFLRETAIEELPSSIERLLRLGHLDLSDCKRLKSLPSSLFKLKSLG  226 (321)
Q Consensus       158 ~L~l~~~~~~~~~~~~~-----------~~~L~~L~l~~~~i~~l~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~  226 (321)
                      +|++++|...+.+|...           +++|++|++++|.++.+|..+..+++|++|++++|.+.+ +|..++.+++|+
T Consensus       154 ~L~L~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~N~l~~-l~~~l~~l~~L~  232 (328)
T 4fcg_A          154 ELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIRSLPASIANLQNLKSLKIRNSPLSA-LGPAIHHLPKLE  232 (328)
T ss_dssp             EEEEEEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCCCCCGGGGGCTTCCEEEEESSCCCC-CCGGGGGCTTCC
T ss_pred             EEECCCCCCccccChhHhhccchhhhccCCCCCEEECcCCCcCcchHhhcCCCCCCEEEccCCCCCc-CchhhccCCCCC
Confidence            99999988888777642           889999999999999999999999999999999999775 566789999999


Q ss_pred             EEEecCCCCCCccccccCCCCCCcEEEcccCCCc-ccchhhhccCCcCEEeccCCCCccccc-CccccccccccccCccc
Q 037308          227 VLNLGGCSNLQRLPECLGQLSSPIILNLAKTNVE-RIPESIIQLFVLRYLLLSYSERIQSVS-LPLARGILEDTQRSPHM  304 (321)
Q Consensus       227 ~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~-~l~~~l~~l~~L~~L~l~~n~~l~~~~-~~~~l~~l~~~~~~~~~  304 (321)
                      .|++++|++.+.+|..++.+++|+.|++++|.+. .+|..+..+++|++|++++|+.++.+| ....+..+....+....
T Consensus       233 ~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l~~L~~L~~l~l~~~~  312 (328)
T 4fcg_A          233 ELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPHL  312 (328)
T ss_dssp             EEECTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCCGGGGGSCTTCEEECCGGG
T ss_pred             EEECcCCcchhhhHHHhcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhccHHHhhccCceEEeCCHHH
Confidence            9999999999999999999999999999998766 889899999999999999999999988 44555555555444433

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=99.94  E-value=1.6e-26  Score=221.43  Aligned_cols=200  Identities=19%  Similarity=0.196  Sum_probs=174.0

Q ss_pred             CcccEEEecCCCCCCC---CCcC-CcCceeEEeccCCcccccccCCCCCCChHhHHhhccccccccCCCCCCCCCCCCcc
Q 037308           58 AEVKYFHWHGYPLKSL---PSNL-SAEKLVFLKVPYSDIEQLWNGEKHYSNLNQIINATCNKLIAKTPNPTLMPHLNKLV  133 (321)
Q Consensus        58 ~~L~~l~l~~~~l~~~---~~~~-~l~~L~~L~l~~~~l~~~~~~~~~l~~L~~~l~l~~~~l~~~~~~~~~~~~l~~L~  133 (321)
                      ++|+++++++|.+..+   +..+ .+++|++|++++|.+..++..+..+++|+. ++++.|.+.+..+ ...+..+++|+
T Consensus       350 ~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~l~~L~~-L~l~~n~l~~~~~-~~~~~~l~~L~  427 (606)
T 3vq2_A          350 PSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAIIMSANFMGLEELQH-LDFQHSTLKRVTE-FSAFLSLEKLL  427 (606)
T ss_dssp             TTCCEEECCSSCEEEEEECCHHHHCCSCCCEEECCSCSEEEECCCCTTCTTCCE-EECTTSEEESTTT-TTTTTTCTTCC
T ss_pred             CCCCEEECcCCccCCCcchhhhhccCCcccEeECCCCccccchhhccCCCCCCe-eECCCCccCCccC-hhhhhccccCC
Confidence            8889999988887655   4444 899999999999999999888899999999 9999999984444 23788999999


Q ss_pred             EEEccCCCCCcccCccccCcccCcEEecCCCCCccc-cccc--ccCCccEEEeccccccccC-hhhhccCCCCeEecccC
Q 037308          134 ILNLRGSKSLKSLPSGIFNLEFLTKLDLSGCSKLKR-LLEI--SSGNINWLFLRETAIEELP-SSIERLLRLGHLDLSDC  209 (321)
Q Consensus       134 ~L~l~~n~~~~~~p~~l~~l~~L~~L~l~~~~~~~~-~~~~--~~~~L~~L~l~~~~i~~l~-~~~~~l~~L~~L~l~~n  209 (321)
                      +|++++|.+.+..|..+..+++|++|++++|...+. .|..  .+++|++|++++|.+++++ ..+..+++|++|++++|
T Consensus       428 ~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N  507 (606)
T 3vq2_A          428 YLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHN  507 (606)
T ss_dssp             EEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred             EEECcCCCCCccchhhhcCCCCCCEEECCCCcCCCcchHHhhccCCCCCEEECCCCcCCccChhhhcccccCCEEECCCC
Confidence            999999998887888899999999999999876553 4433  5789999999999999865 56889999999999999


Q ss_pred             cccccccccccCCCCCCEEEecCCCCCCccccccCCCC-CCcEEEcccCCCc
Q 037308          210 KRLKSLPSSLFKLKSLGVLNLGGCSNLQRLPECLGQLS-SPIILNLAKTNVE  260 (321)
Q Consensus       210 ~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~-~L~~L~l~~n~l~  260 (321)
                      .+.+..|..++.+++|+.|++++|.+. .+|..+..++ +|+.|++++|.+.
T Consensus       508 ~l~~~~~~~~~~l~~L~~L~l~~N~l~-~~p~~~~~l~~~L~~l~l~~N~~~  558 (606)
T 3vq2_A          508 NLLFLDSSHYNQLYSLSTLDCSFNRIE-TSKGILQHFPKSLAFFNLTNNSVA  558 (606)
T ss_dssp             CCSCEEGGGTTTCTTCCEEECTTSCCC-CEESCGGGSCTTCCEEECCSCCCC
T ss_pred             cCCCcCHHHccCCCcCCEEECCCCcCc-ccCHhHhhhcccCcEEEccCCCcc
Confidence            999988999999999999999998866 6777788887 6999999999998

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=99.94  E-value=1.2e-26  Score=204.61  Aligned_cols=250  Identities=15%  Similarity=0.156  Sum_probs=214.3

Q ss_pred             CCceEEEEeecCCCCccccceeccCCCCc-CcccEEEecC-CCCC-CCCCcC-CcCceeEEeccCCccc-ccccCCCCCC
Q 037308           29 PKLRFLKFYSSSFNGENKCKVSYLQDPRF-AEVKYFHWHG-YPLK-SLPSNL-SAEKLVFLKVPYSDIE-QLWNGEKHYS  103 (321)
Q Consensus        29 ~~L~~L~l~~n~~~~~~~~~~~~~~~l~~-~~L~~l~l~~-~~l~-~~~~~~-~l~~L~~L~l~~~~l~-~~~~~~~~l~  103 (321)
                      .++++|++++|.+++.    ...+..+.. ++|++|++++ +.+. .+|..+ .+++|++|++++|.++ .++..+..++
T Consensus        50 ~~l~~L~L~~~~l~~~----~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~  125 (313)
T 1ogq_A           50 YRVNNLDLSGLNLPKP----YPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIK  125 (313)
T ss_dssp             CCEEEEEEECCCCSSC----EECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCT
T ss_pred             ceEEEEECCCCCccCC----cccChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCC
Confidence            5899999999987641    133455666 9999999995 7664 677766 8999999999999998 5677789999


Q ss_pred             ChHhHHhhccccccccCCCCCCCCCCCCccEEEccCCCCCcccCccccCcc-cCcEEecCCCCCccccccc-ccCCccEE
Q 037308          104 NLNQIINATCNKLIAKTPNPTLMPHLNKLVILNLRGSKSLKSLPSGIFNLE-FLTKLDLSGCSKLKRLLEI-SSGNINWL  181 (321)
Q Consensus       104 ~L~~~l~l~~~~l~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~l~~l~-~L~~L~l~~~~~~~~~~~~-~~~~L~~L  181 (321)
                      +|+. ++++.|.+.+.+|.  .+..+++|++|++++|.+.+.+|..+..++ +|+.|++++|...+..|.. ...+|++|
T Consensus       126 ~L~~-L~Ls~N~l~~~~p~--~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~L~~L  202 (313)
T 1ogq_A          126 TLVT-LDFSYNALSGTLPP--SISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLNLAFV  202 (313)
T ss_dssp             TCCE-EECCSSEEESCCCG--GGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCCCSEE
T ss_pred             CCCE-EeCCCCccCCcCCh--HHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCCcccEE
Confidence            9999 99999999977776  899999999999999998778998898998 9999999998766565554 22249999


Q ss_pred             Eeccccccc-cChhhhccCCCCeEecccCcccccccccccCCCCCCEEEecCCCCCCccccccCCCCCCcEEEcccCCCc
Q 037308          182 FLRETAIEE-LPSSIERLLRLGHLDLSDCKRLKSLPSSLFKLKSLGVLNLGGCSNLQRLPECLGQLSSPIILNLAKTNVE  260 (321)
Q Consensus       182 ~l~~~~i~~-l~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~  260 (321)
                      ++++|.+++ .|..+..+++|++|++++|.+.+..+. +..+++|+.|++++|.+.+.+|..+..+++|+.|++++|+++
T Consensus       203 ~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~-~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~  281 (313)
T 1ogq_A          203 DLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGK-VGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLC  281 (313)
T ss_dssp             ECCSSEEEECCGGGCCTTSCCSEEECCSSEECCBGGG-CCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEE
T ss_pred             ECcCCcccCcCCHHHhcCCCCCEEECCCCceeeecCc-ccccCCCCEEECcCCcccCcCChHHhcCcCCCEEECcCCccc
Confidence            999999997 556688999999999999998877666 788999999999999999899999999999999999999999


Q ss_pred             -ccchhhhccCCcCEEeccCCCCccccc
Q 037308          261 -RIPESIIQLFVLRYLLLSYSERIQSVS  287 (321)
Q Consensus       261 -~l~~~l~~l~~L~~L~l~~n~~l~~~~  287 (321)
                       .+|.. ..+++|+.+++.+|+.+...|
T Consensus       282 ~~ip~~-~~l~~L~~l~l~~N~~lc~~p  308 (313)
T 1ogq_A          282 GEIPQG-GNLQRFDVSAYANNKCLCGSP  308 (313)
T ss_dssp             EECCCS-TTGGGSCGGGTCSSSEEESTT
T ss_pred             ccCCCC-ccccccChHHhcCCCCccCCC
Confidence             77765 789999999999998787755

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=99.94  E-value=1.4e-25  Score=199.07  Aligned_cols=221  Identities=16%  Similarity=0.176  Sum_probs=111.9

Q ss_pred             CcccEEEecCCCCCCCCCc-C-CcCceeEEeccCCccccc-ccCCCCCCChHhHHhhccccccccCCCCCCCCCCCCccE
Q 037308           58 AEVKYFHWHGYPLKSLPSN-L-SAEKLVFLKVPYSDIEQL-WNGEKHYSNLNQIINATCNKLIAKTPNPTLMPHLNKLVI  134 (321)
Q Consensus        58 ~~L~~l~l~~~~l~~~~~~-~-~l~~L~~L~l~~~~l~~~-~~~~~~l~~L~~~l~l~~~~l~~~~~~~~~~~~l~~L~~  134 (321)
                      ++++.|++++|.+..++.. + .+++|++|++++|.++.+ +..+..+++|+. ++++.|.++ .+|.  .+.  ++|++
T Consensus        52 ~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~-L~Ls~n~l~-~l~~--~~~--~~L~~  125 (330)
T 1xku_A           52 PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLER-LYLSKNQLK-ELPE--KMP--KTLQE  125 (330)
T ss_dssp             TTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCE-EECCSSCCS-BCCS--SCC--TTCCE
T ss_pred             CCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCE-EECCCCcCC-ccCh--hhc--ccccE
Confidence            4555555555555554442 2 455555555555555554 334455555555 555555555 4443  221  45555


Q ss_pred             EEccCCCCCcccCccccCcccCcEEecCCCCCcc--ccccc--ccCCccEEEeccccccccChhhhccCCCCeEecccCc
Q 037308          135 LNLRGSKSLKSLPSGIFNLEFLTKLDLSGCSKLK--RLLEI--SSGNINWLFLRETAIEELPSSIERLLRLGHLDLSDCK  210 (321)
Q Consensus       135 L~l~~n~~~~~~p~~l~~l~~L~~L~l~~~~~~~--~~~~~--~~~~L~~L~l~~~~i~~l~~~~~~l~~L~~L~l~~n~  210 (321)
                      |++++|.+.+..+..+.++++|+.|++++|....  ..+..  .+++|++|++++|.++.+|..+.  ++|++|++++|.
T Consensus       126 L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~l~~~~~--~~L~~L~l~~n~  203 (330)
T 1xku_A          126 LRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQGLP--PSLTELHLDGNK  203 (330)
T ss_dssp             EECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCCSCCSSCC--TTCSEEECTTSC
T ss_pred             EECCCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCccccCCcccc--ccCCEEECCCCc
Confidence            5555555333333334555555555555543321  11111  24455555555555555554322  455555555555


Q ss_pred             ccccccccccCCCCCCEEEecCCCCCCccccccCCCCCCcEEEcccCCCcccchhhhccCCcCEEeccCCCCccccc
Q 037308          211 RLKSLPSSLFKLKSLGVLNLGGCSNLQRLPECLGQLSSPIILNLAKTNVERIPESIIQLFVLRYLLLSYSERIQSVS  287 (321)
Q Consensus       211 ~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~l~~~l~~l~~L~~L~l~~n~~l~~~~  287 (321)
                      +.+..+..+..+++|+.|++++|.+.+..+..+..+++|+.|++++|.++.+|..+..+++|++|++++| .++.++
T Consensus       204 l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~lp~~l~~l~~L~~L~l~~N-~i~~~~  279 (330)
T 1xku_A          204 ITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLVKVPGGLADHKYIQVVYLHNN-NISAIG  279 (330)
T ss_dssp             CCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCSSCCTTTTTCSSCCEEECCSS-CCCCCC
T ss_pred             CCccCHHHhcCCCCCCEEECCCCcCceeChhhccCCCCCCEEECCCCcCccCChhhccCCCcCEEECCCC-cCCccC
Confidence            5544444555555555555555555444444455555555555555555555555555555555555555 444443

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A

Probab=99.94  E-value=1.8e-25  Score=207.66  Aligned_cols=218  Identities=17%  Similarity=0.188  Sum_probs=100.7

Q ss_pred             hcCCCCceEEEEeecCCCCccccceeccCCCCc-CcccEEEecCCCCCCCCCcCCcCceeEEeccCCcccccccCCCCCC
Q 037308           25 FTKMPKLRFLKFYSSSFNGENKCKVSYLQDPRF-AEVKYFHWHGYPLKSLPSNLSAEKLVFLKVPYSDIEQLWNGEKHYS  103 (321)
Q Consensus        25 l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~l~~-~~L~~l~l~~~~l~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~l~  103 (321)
                      +..+++|++|++++|.+++..       . +.. ++|++|++++|.+..++....+++|++|++++|.++.++. +..++
T Consensus        64 ~~~l~~L~~L~Ls~n~l~~~~-------~-~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~L~~n~l~~~~~-~~~l~  134 (466)
T 1o6v_A           64 VEYLNNLTQINFSNNQLTDIT-------P-LKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITDIDP-LKNLT  134 (466)
T ss_dssp             GGGCTTCCEEECCSSCCCCCG-------G-GTTCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCCCGG-GTTCT
T ss_pred             hhhhcCCCEEECCCCccCCch-------h-hhccccCCEEECCCCccccChhhcCCCCCCEEECCCCCCCCChH-HcCCC
Confidence            555666666666666543221       1 223 5555555555555444442245555555555555544432 44444


Q ss_pred             ChHhHHhhccccccccCCC------------------CCCCCCCCCccEEEccCCCCCcccCccccCcccCcEEecCCCC
Q 037308          104 NLNQIINATCNKLIAKTPN------------------PTLMPHLNKLVILNLRGSKSLKSLPSGIFNLEFLTKLDLSGCS  165 (321)
Q Consensus       104 ~L~~~l~l~~~~l~~~~~~------------------~~~~~~l~~L~~L~l~~n~~~~~~p~~l~~l~~L~~L~l~~~~  165 (321)
                      +|+. ++++.|.+. .++.                  ...+..+++|++|++++|.+. .++. +..+++|++|++++|.
T Consensus       135 ~L~~-L~l~~n~l~-~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~L~~L~l~~n~l~-~~~~-l~~l~~L~~L~l~~n~  210 (466)
T 1o6v_A          135 NLNR-LELSSNTIS-DISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVS-DISV-LAKLTNLESLIATNNQ  210 (466)
T ss_dssp             TCSE-EEEEEEEEC-CCGGGTTCTTCSEEEEEESCCCCGGGTTCTTCCEEECCSSCCC-CCGG-GGGCTTCSEEECCSSC
T ss_pred             CCCE-EECCCCccC-CChhhccCCcccEeecCCcccCchhhccCCCCCEEECcCCcCC-CChh-hccCCCCCEEEecCCc
Confidence            4444 444444443 2110                  002445566666666666532 2232 5556666666666554


Q ss_pred             CcccccccccCCccEEEeccccccccChhhhccCCCCeEecccCcccccccccccCCCCCCEEEecCCCCCCccccccCC
Q 037308          166 KLKRLLEISSGNINWLFLRETAIEELPSSIERLLRLGHLDLSDCKRLKSLPSSLFKLKSLGVLNLGGCSNLQRLPECLGQ  245 (321)
Q Consensus       166 ~~~~~~~~~~~~L~~L~l~~~~i~~l~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~  245 (321)
                      ..+..+...+++|+.|++++|.+++++ .+..+++|++|++++|.+.+..+  +..+++|+.|++++|.+.+..+  +..
T Consensus       211 l~~~~~~~~l~~L~~L~l~~n~l~~~~-~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~  285 (466)
T 1o6v_A          211 ISDITPLGILTNLDELSLNGNQLKDIG-TLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNISP--LAG  285 (466)
T ss_dssp             CCCCGGGGGCTTCCEEECCSSCCCCCG-GGGGCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCCCCGG--GTT
T ss_pred             ccccccccccCCCCEEECCCCCcccch-hhhcCCCCCEEECCCCccccchh--hhcCCCCCEEECCCCccCcccc--ccC
Confidence            333322223455555555555555443 24444455555555544433222  3444444444444443333221  333


Q ss_pred             CCCCcEEEcccCCCc
Q 037308          246 LSSPIILNLAKTNVE  260 (321)
Q Consensus       246 ~~~L~~L~l~~n~l~  260 (321)
                      +++|+.|++++|+++
T Consensus       286 l~~L~~L~L~~n~l~  300 (466)
T 1o6v_A          286 LTALTNLELNENQLE  300 (466)
T ss_dssp             CTTCSEEECCSSCCS
T ss_pred             CCccCeEEcCCCccc
Confidence            444444444444443

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=99.94  E-value=3.6e-25  Score=196.55  Aligned_cols=241  Identities=15%  Similarity=0.151  Sum_probs=200.9

Q ss_pred             CCceEEEEeecCCCCccccceeccCCCCc-CcccEEEecCCCCCCC-CCcC-CcCceeEEeccCCcccccccCCCCCCCh
Q 037308           29 PKLRFLKFYSSSFNGENKCKVSYLQDPRF-AEVKYFHWHGYPLKSL-PSNL-SAEKLVFLKVPYSDIEQLWNGEKHYSNL  105 (321)
Q Consensus        29 ~~L~~L~l~~n~~~~~~~~~~~~~~~l~~-~~L~~l~l~~~~l~~~-~~~~-~l~~L~~L~l~~~~l~~~~~~~~~l~~L  105 (321)
                      +++++|++++|.+++.      ....+.. ++|++|++++|.+..+ |..+ .+++|++|++++|.++.++....  ++|
T Consensus        52 ~~l~~L~L~~n~i~~~------~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~--~~L  123 (330)
T 1xku_A           52 PDTALLDLQNNKITEI------KDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLKELPEKMP--KTL  123 (330)
T ss_dssp             TTCCEEECCSSCCCCB------CTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCSBCCSSCC--TTC
T ss_pred             CCCeEEECCCCcCCEe------ChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECCCCcCCccChhhc--ccc
Confidence            6899999999986532      2234565 9999999999999887 5555 89999999999999998876654  788


Q ss_pred             HhHHhhccccccccCCCCCCCCCCCCccEEEccCCCCCc--ccCccccCcccCcEEecCCCCCcccccccccCCccEEEe
Q 037308          106 NQIINATCNKLIAKTPNPTLMPHLNKLVILNLRGSKSLK--SLPSGIFNLEFLTKLDLSGCSKLKRLLEISSGNINWLFL  183 (321)
Q Consensus       106 ~~~l~l~~~~l~~~~~~~~~~~~l~~L~~L~l~~n~~~~--~~p~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l  183 (321)
                      +. ++++.|.+. .++. ..+..+++|++|++++|.+..  ..+..+..+++|+.|++++|. ++.+|....++|++|++
T Consensus       124 ~~-L~l~~n~l~-~~~~-~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~-l~~l~~~~~~~L~~L~l  199 (330)
T 1xku_A          124 QE-LRVHENEIT-KVRK-SVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTN-ITTIPQGLPPSLTELHL  199 (330)
T ss_dssp             CE-EECCSSCCC-BBCH-HHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSC-CCSCCSSCCTTCSEEEC
T ss_pred             cE-EECCCCccc-ccCH-hHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCc-cccCCccccccCCEEEC
Confidence            88 999999998 5442 157899999999999998643  556678899999999999975 44566555689999999


Q ss_pred             ccccccccC-hhhhccCCCCeEecccCcccccccccccCCCCCCEEEecCCCCCCccccccCCCCCCcEEEcccCCCccc
Q 037308          184 RETAIEELP-SSIERLLRLGHLDLSDCKRLKSLPSSLFKLKSLGVLNLGGCSNLQRLPECLGQLSSPIILNLAKTNVERI  262 (321)
Q Consensus       184 ~~~~i~~l~-~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~l  262 (321)
                      ++|.+++++ ..+..+++|++|++++|.+.+..+..+..+++|+.|++++|.+. .+|..+..+++|+.|++++|+++.+
T Consensus       200 ~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~i~~~  278 (330)
T 1xku_A          200 DGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNISAI  278 (330)
T ss_dssp             TTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCS-SCCTTTTTCSSCCEEECCSSCCCCC
T ss_pred             CCCcCCccCHHHhcCCCCCCEEECCCCcCceeChhhccCCCCCCEEECCCCcCc-cCChhhccCCCcCEEECCCCcCCcc
Confidence            999999874 67889999999999999988877778999999999999998765 7788899999999999999999987


Q ss_pred             ch-hhh------ccCCcCEEeccCCCC
Q 037308          263 PE-SII------QLFVLRYLLLSYSER  282 (321)
Q Consensus       263 ~~-~l~------~l~~L~~L~l~~n~~  282 (321)
                      +. .+.      ..+.++.+++.+|+.
T Consensus       279 ~~~~f~~~~~~~~~~~l~~l~l~~N~~  305 (330)
T 1xku_A          279 GSNDFCPPGYNTKKASYSGVSLFSNPV  305 (330)
T ss_dssp             CTTSSSCSSCCTTSCCCSEEECCSSSS
T ss_pred             ChhhcCCcccccccccccceEeecCcc
Confidence            74 332      247889999999953

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}

Probab=99.94  E-value=1.1e-25  Score=221.73  Aligned_cols=249  Identities=15%  Similarity=0.124  Sum_probs=193.9

Q ss_pred             hhcCCCCceEEEEeecCCCCccccceeccCCCCc-CcccEEEecCCCCCCCCCcC-CcCc-eeEEeccCCcccccccCCC
Q 037308           24 TFTKMPKLRFLKFYSSSFNGENKCKVSYLQDPRF-AEVKYFHWHGYPLKSLPSNL-SAEK-LVFLKVPYSDIEQLWNGEK  100 (321)
Q Consensus        24 ~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~l~~-~~L~~l~l~~~~l~~~~~~~-~l~~-L~~L~l~~~~l~~~~~~~~  100 (321)
                      .++.+++|++|++++|.++       ..+ .+.. ++|+.|++++|.+..+|..+ .+++ |+.|++++|.++.++..+.
T Consensus       568 ~l~~L~~L~~L~Ls~N~l~-------~lp-~~~~L~~L~~L~Ls~N~l~~lp~~l~~l~~~L~~L~Ls~N~L~~lp~~~~  639 (876)
T 4ecn_A          568 SLQKMVKLGLLDCVHNKVR-------HLE-AFGTNVKLTDLKLDYNQIEEIPEDFCAFTDQVEGLGFSHNKLKYIPNIFN  639 (876)
T ss_dssp             HHTTCTTCCEEECTTSCCC-------BCC-CCCTTSEESEEECCSSCCSCCCTTSCEECTTCCEEECCSSCCCSCCSCCC
T ss_pred             hhhcCCCCCEEECCCCCcc-------cch-hhcCCCcceEEECcCCccccchHHHhhccccCCEEECcCCCCCcCchhhh
Confidence            5777777888887777643       222 4555 78888888888887777665 6777 8888888888887776655


Q ss_pred             CCCC--hHhHHhhccccccccCCCC-CCCC--CCCCccEEEccCCCCCcccCccc-cCcccCcEEecCCCCCcccccccc
Q 037308          101 HYSN--LNQIINATCNKLIAKTPNP-TLMP--HLNKLVILNLRGSKSLKSLPSGI-FNLEFLTKLDLSGCSKLKRLLEIS  174 (321)
Q Consensus       101 ~l~~--L~~~l~l~~~~l~~~~~~~-~~~~--~l~~L~~L~l~~n~~~~~~p~~l-~~l~~L~~L~l~~~~~~~~~~~~~  174 (321)
                      ..+.  |+. ++++.|.+.+.+|.. ..+.  .+++|+.|++++|.+. .+|..+ ..+++|+.|++++|... .+|...
T Consensus       640 ~~~~~~L~~-L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N~L~-~lp~~~~~~l~~L~~L~Ls~N~L~-~ip~~~  716 (876)
T 4ecn_A          640 AKSVYVMGS-VDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQ-KFPTELFATGSPISTIILSNNLMT-SIPENS  716 (876)
T ss_dssp             TTCSSCEEE-EECCSSCTTTTSSSCSSCTTTCCCCCEEEEECCSSCCC-SCCHHHHHTTCCCSEEECCSCCCS-CCCTTS
T ss_pred             ccccCCCCE-EECcCCcCCCccccchhhhccccCCCcCEEEccCCcCC-ccCHHHHccCCCCCEEECCCCcCC-ccChHH
Confidence            5543  777 888888887544420 0122  3458899999998854 666544 47899999999997544 565542


Q ss_pred             c----------CCccEEEeccccccccChhhh--ccCCCCeEecccCcccccccccccCCCCCCEEEecC------CCCC
Q 037308          175 S----------GNINWLFLRETAIEELPSSIE--RLLRLGHLDLSDCKRLKSLPSSLFKLKSLGVLNLGG------CSNL  236 (321)
Q Consensus       175 ~----------~~L~~L~l~~~~i~~l~~~~~--~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~------~~~~  236 (321)
                      +          ++|+.|++++|.++.+|..+.  .+++|+.|++++|.+.+ +|..++.+++|+.|++++      |.+.
T Consensus       717 ~~~~~~~l~nl~~L~~L~Ls~N~L~~lp~~l~~~~l~~L~~L~Ls~N~L~~-lp~~l~~L~~L~~L~Ls~N~~ls~N~l~  795 (876)
T 4ecn_A          717 LKPKDGNYKNTYLLTTIDLRFNKLTSLSDDFRATTLPYLSNMDVSYNCFSS-FPTQPLNSSQLKAFGIRHQRDAEGNRIL  795 (876)
T ss_dssp             SSCTTSCCTTGGGCCEEECCSSCCCCCCGGGSTTTCTTCCEEECCSSCCSS-CCCGGGGCTTCCEEECCCCBCTTCCBCC
T ss_pred             hccccccccccCCccEEECCCCCCccchHHhhhccCCCcCEEEeCCCCCCc-cchhhhcCCCCCEEECCCCCCccccccc
Confidence            2          289999999999999998886  89999999999999887 788899999999999976      7778


Q ss_pred             CccccccCCCCCCcEEEcccCCCcccchhhhccCCcCEEeccCCCCccccc
Q 037308          237 QRLPECLGQLSSPIILNLAKTNVERIPESIIQLFVLRYLLLSYSERIQSVS  287 (321)
Q Consensus       237 ~~~~~~~~~~~~L~~L~l~~n~l~~l~~~l~~l~~L~~L~l~~n~~l~~~~  287 (321)
                      +.+|..+..+++|+.|++++|++..+|..+.  ++|+.|++++| .+..+.
T Consensus       796 ~~ip~~l~~L~~L~~L~Ls~N~L~~Ip~~l~--~~L~~LdLs~N-~l~~i~  843 (876)
T 4ecn_A          796 RQWPTGITTCPSLIQLQIGSNDIRKVDEKLT--PQLYILDIADN-PNISID  843 (876)
T ss_dssp             CCCCTTGGGCSSCCEEECCSSCCCBCCSCCC--SSSCEEECCSC-TTCEEE
T ss_pred             ccChHHHhcCCCCCEEECCCCCCCccCHhhc--CCCCEEECCCC-CCCccC
Confidence            8899999999999999999999999998654  79999999999 555543

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=99.94  E-value=8.9e-26  Score=224.08  Aligned_cols=283  Identities=17%  Similarity=0.123  Sum_probs=198.3

Q ss_pred             eecCchhhhccChhhhcCCCCceEEEEeecCCCCccccceeccCCCCc-CcccEEEecCCCCCCC-CCcC-CcCceeEEe
Q 037308           10 LDMSTVKEIRLNLSTFTKMPKLRFLKFYSSSFNGENKCKVSYLQDPRF-AEVKYFHWHGYPLKSL-PSNL-SAEKLVFLK   86 (321)
Q Consensus        10 l~~~~~~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~l~~-~~L~~l~l~~~~l~~~-~~~~-~l~~L~~L~   86 (321)
                      ||++++......+..|+.+++|++|++++|...+     ...+..+.. ++|++|++++|.+..+ |..+ ++++|++|+
T Consensus        29 LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~-----~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~  103 (844)
T 3j0a_A           29 LLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPL-----TIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFELR  103 (844)
T ss_dssp             EEEESCCCCEECSSSCSSCCSCSEEEECTTCCCC-----EECTTTTSSCTTCCEEECTTCCCCEECTTSSCSCSSCCCEE
T ss_pred             EECCCCcCCccChhHCcccccCeEEeCCCCCCcc-----ccCHHHhcCCCCCCEEECCCCcCcccCHhHccCCcccCEee
Confidence            3445555556666778888888888888875221     122455666 8888888888888765 4455 788888888


Q ss_pred             ccCCcccc-cccC--CCCCCChHhHHhhccccccccCCCCCCCCCCCCccEEEccCCCCCcccCccccCc--cc------
Q 037308           87 VPYSDIEQ-LWNG--EKHYSNLNQIINATCNKLIAKTPNPTLMPHLNKLVILNLRGSKSLKSLPSGIFNL--EF------  155 (321)
Q Consensus        87 l~~~~l~~-~~~~--~~~l~~L~~~l~l~~~~l~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~l~~l--~~------  155 (321)
                      +++|.+.. ++..  +..+++|+. |+++.|.+. ..+.+..+..+++|++|++++|.+.+..+..+..+  ++      
T Consensus       104 Ls~n~l~~~~~~~~~~~~L~~L~~-L~Ls~N~l~-~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~l~~l~~~~L~~L~L  181 (844)
T 3j0a_A          104 LYFCGLSDAVLKDGYFRNLKALTR-LDLSKNQIR-SLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSL  181 (844)
T ss_dssp             CTTCCCSSCCSTTCCCSSCSSCCE-EEEESCCCC-CCCCCGGGGTCSSCCEEEEESSCCCCCCSGGGHHHHHCSSCCCEE
T ss_pred             CcCCCCCcccccCccccccCCCCE-EECCCCccc-ccccchhHhhCCCCCEEECCCCcCCeeCHHHcccccCCccceEEC
Confidence            88888875 2332  678888888 888888887 43322257788888888888887655444433322  22      


Q ss_pred             ------------------------CcEEecCCCCCccccccc--------------------------------------
Q 037308          156 ------------------------LTKLDLSGCSKLKRLLEI--------------------------------------  173 (321)
Q Consensus       156 ------------------------L~~L~l~~~~~~~~~~~~--------------------------------------  173 (321)
                                              |+.|++++|......+..                                      
T Consensus       182 ~~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~~~~~~~l~~~~~~~f~  261 (844)
T 3j0a_A          182 AANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFA  261 (844)
T ss_dssp             CCSBSCCCCCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCCBCSSSCSSSTTGGGTTTT
T ss_pred             CCCccccccccchhhcCCccccCceeEEecCCCcCchhHHHHHHhhcCcccccceecccccccccccccccCCCChhhhh
Confidence                                    666666665321111100                                      


Q ss_pred             --ccCCccEEEeccccccccC-hhhhccCCCCeEecccCcccccccccccCCCCCCEEEecCCCCCCccccccCCCCCCc
Q 037308          174 --SSGNINWLFLRETAIEELP-SSIERLLRLGHLDLSDCKRLKSLPSSLFKLKSLGVLNLGGCSNLQRLPECLGQLSSPI  250 (321)
Q Consensus       174 --~~~~L~~L~l~~~~i~~l~-~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~  250 (321)
                        ..++|+.|++++|.+.+++ ..+..+++|++|++++|.+.+..+..+..+++|+.|++++|.+.+..+..+..+++|+
T Consensus       262 ~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~  341 (844)
T 3j0a_A          262 GLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVA  341 (844)
T ss_dssp             TTTTSCCCEEECTTCCCCEECSCCSSSCCCCCEEEEESCCCCEECTTTTTTCSSCCEEEEESCCCSCCCSCSCSSCTTCC
T ss_pred             ccccCCccEEECCCCcccccChhhhhcCCCCCEEECCCCcCCCCChHHhcCCCCCCEEECCCCCCCccCHHHhcCCCCCC
Confidence              1256778888888877754 4577788888888888888777777788888888888888887777777888888888


Q ss_pred             EEEcccCCCcccch-hhhccCCcCEEeccCCCCcccccCcccccccccccc
Q 037308          251 ILNLAKTNVERIPE-SIIQLFVLRYLLLSYSERIQSVSLPLARGILEDTQR  300 (321)
Q Consensus       251 ~L~l~~n~l~~l~~-~l~~l~~L~~L~l~~n~~l~~~~~~~~l~~l~~~~~  300 (321)
                      .|++++|.++.++. .+..+++|++|++++| .++.++..++++.+++.++
T Consensus       342 ~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N-~l~~i~~~~~L~~L~l~~N  391 (844)
T 3j0a_A          342 YIDLQKNHIAIIQDQTFKFLEKLQTLDLRDN-ALTTIHFIPSIPDIFLSGN  391 (844)
T ss_dssp             EEECCSCCCCCCCSSCSCSCCCCCEEEEETC-CSCCCSSCCSCSEEEEESC
T ss_pred             EEECCCCCCCccChhhhcCCCCCCEEECCCC-CCCcccCCCCcchhccCCC
Confidence            88888888886664 5677888888888888 7777765566666666554

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=99.94  E-value=1e-25  Score=204.55  Aligned_cols=260  Identities=13%  Similarity=0.054  Sum_probs=204.4

Q ss_pred             CCCCceEEEEeecCCCCccccceeccCC-CCc-CcccEEEecCCCCCCCCC-cC-CcCceeEEeccCCccccccc-CCCC
Q 037308           27 KMPKLRFLKFYSSSFNGENKCKVSYLQD-PRF-AEVKYFHWHGYPLKSLPS-NL-SAEKLVFLKVPYSDIEQLWN-GEKH  101 (321)
Q Consensus        27 ~l~~L~~L~l~~n~~~~~~~~~~~~~~~-l~~-~~L~~l~l~~~~l~~~~~-~~-~l~~L~~L~l~~~~l~~~~~-~~~~  101 (321)
                      .++++++|++.+|.++       ..+.. +.. ++|++|++++|.+..++. .+ .+++|++|++++|.++.++. .+..
T Consensus        43 ~l~~l~~l~l~~~~l~-------~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~  115 (390)
T 3o6n_A           43 TLNNQKIVTFKNSTMR-------KLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQN  115 (390)
T ss_dssp             GGCCCSEEEEESCEES-------EECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTT
T ss_pred             ccCCceEEEecCCchh-------hCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcC
Confidence            3589999999998632       23332 344 899999999999988776 34 89999999999999998864 4688


Q ss_pred             CCChHhHHhhccccccccCCCCCCCCCCCCccEEEccCCCCCcccCccccCcccCcEEecCCCCCcccccccccCCccE-
Q 037308          102 YSNLNQIINATCNKLIAKTPNPTLMPHLNKLVILNLRGSKSLKSLPSGIFNLEFLTKLDLSGCSKLKRLLEISSGNINW-  180 (321)
Q Consensus       102 l~~L~~~l~l~~~~l~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~-  180 (321)
                      +++|+. ++++.|.++ .++. ..+..+++|++|++++|.+.+..|..+..+++|+.|++++|.... .+...+++|+. 
T Consensus       116 l~~L~~-L~L~~n~l~-~l~~-~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~-~~~~~l~~L~~L  191 (390)
T 3o6n_A          116 VPLLTV-LVLERNDLS-SLPR-GIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTH-VDLSLIPSLFHA  191 (390)
T ss_dssp             CTTCCE-EECCSSCCC-CCCT-TTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSB-CCGGGCTTCSEE
T ss_pred             CCCCCE-EECCCCccC-cCCH-HHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcCCc-ccccccccccee
Confidence            999999 999999999 7774 246899999999999999776667779999999999999976433 23223455555 


Q ss_pred             ------------------EEeccccccccChhhhccCCCCeEecccCcccccccccccCCCCCCEEEecCCCCCCccccc
Q 037308          181 ------------------LFLRETAIEELPSSIERLLRLGHLDLSDCKRLKSLPSSLFKLKSLGVLNLGGCSNLQRLPEC  242 (321)
Q Consensus       181 ------------------L~l~~~~i~~l~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~  242 (321)
                                        |++++|.+..+|..  ..++|++|++++|.+.+.  ..+..+++|+.|++++|.+.+..|..
T Consensus       192 ~l~~n~l~~~~~~~~L~~L~l~~n~l~~~~~~--~~~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~Ls~n~l~~~~~~~  267 (390)
T 3o6n_A          192 NVSYNLLSTLAIPIAVEELDASHNSINVVRGP--VNVELTILKLQHNNLTDT--AWLLNYPGLVEVDLSYNELEKIMYHP  267 (390)
T ss_dssp             ECCSSCCSEEECCSSCSEEECCSSCCCEEECC--CCSSCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCEEESGG
T ss_pred             ecccccccccCCCCcceEEECCCCeeeecccc--ccccccEEECCCCCCccc--HHHcCCCCccEEECCCCcCCCcChhH
Confidence                              45555555444422  235788888888887653  46788999999999999888888889


Q ss_pred             cCCCCCCcEEEcccCCCcccchhhhccCCcCEEeccCCCCccccc----CccccccccccccCc
Q 037308          243 LGQLSSPIILNLAKTNVERIPESIIQLFVLRYLLLSYSERIQSVS----LPLARGILEDTQRSP  302 (321)
Q Consensus       243 ~~~~~~L~~L~l~~n~l~~l~~~l~~l~~L~~L~l~~n~~l~~~~----~~~~l~~l~~~~~~~  302 (321)
                      +..+++|+.|++++|+++.+|..+..+++|++|++++| .++.+|    ..++++.|++.++.-
T Consensus       268 ~~~l~~L~~L~L~~n~l~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~l~~L~~L~L~~N~i  330 (390)
T 3o6n_A          268 FVKMQRLERLYISNNRLVALNLYGQPIPTLKVLDLSHN-HLLHVERNQPQFDRLENLYLDHNSI  330 (390)
T ss_dssp             GTTCSSCCEEECCSSCCCEEECSSSCCTTCCEEECCSS-CCCCCGGGHHHHTTCSEEECCSSCC
T ss_pred             ccccccCCEEECCCCcCcccCcccCCCCCCCEEECCCC-cceecCccccccCcCCEEECCCCcc
Confidence            99999999999999999988877788999999999999 787776    235777777776543

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=99.94  E-value=2.3e-25  Score=197.94  Aligned_cols=240  Identities=17%  Similarity=0.154  Sum_probs=199.3

Q ss_pred             CCceEEEEeecCCCCccccceeccCCCCc-CcccEEEecCCCCCCCC-CcC-CcCceeEEeccCCcccccccCCCCCCCh
Q 037308           29 PKLRFLKFYSSSFNGENKCKVSYLQDPRF-AEVKYFHWHGYPLKSLP-SNL-SAEKLVFLKVPYSDIEQLWNGEKHYSNL  105 (321)
Q Consensus        29 ~~L~~L~l~~n~~~~~~~~~~~~~~~l~~-~~L~~l~l~~~~l~~~~-~~~-~l~~L~~L~l~~~~l~~~~~~~~~l~~L  105 (321)
                      ++|++|++++|.++      ...+..+.. ++|++|++++|.+..++ ..+ .+++|++|++++|.++.++....  ++|
T Consensus        54 ~~l~~L~l~~n~i~------~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~--~~L  125 (332)
T 2ft3_A           54 PDTTLLDLQNNDIS------ELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNHLVEIPPNLP--SSL  125 (332)
T ss_dssp             TTCCEEECCSSCCC------EECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECCSSCCCSCCSSCC--TTC
T ss_pred             CCCeEEECCCCcCC------ccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECCCCcCCccCcccc--ccC
Confidence            68999999999754      223345666 99999999999998774 445 79999999999999998877655  789


Q ss_pred             HhHHhhccccccccCCCCCCCCCCCCccEEEccCCCCC--cccCccccCcccCcEEecCCCCCcccccccccCCccEEEe
Q 037308          106 NQIINATCNKLIAKTPNPTLMPHLNKLVILNLRGSKSL--KSLPSGIFNLEFLTKLDLSGCSKLKRLLEISSGNINWLFL  183 (321)
Q Consensus       106 ~~~l~l~~~~l~~~~~~~~~~~~l~~L~~L~l~~n~~~--~~~p~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l  183 (321)
                      ++ ++++.|.+. .++. ..+..+++|++|++++|.+.  +..|..+..+ +|+.|++++|. ++.+|....++|++|++
T Consensus       126 ~~-L~l~~n~i~-~~~~-~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~l~~n~-l~~l~~~~~~~L~~L~l  200 (332)
T 2ft3_A          126 VE-LRIHDNRIR-KVPK-GVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRISEAK-LTGIPKDLPETLNELHL  200 (332)
T ss_dssp             CE-EECCSSCCC-CCCS-GGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCSCCBCCSSB-CSSCCSSSCSSCSCCBC
T ss_pred             CE-EECCCCccC-ccCH-hHhCCCccCCEEECCCCccccCCCCcccccCC-ccCEEECcCCC-CCccCccccCCCCEEEC
Confidence            88 999999998 6653 25889999999999999864  3556667777 99999999976 44566555689999999


Q ss_pred             ccccccccC-hhhhccCCCCeEecccCcccccccccccCCCCCCEEEecCCCCCCccccccCCCCCCcEEEcccCCCccc
Q 037308          184 RETAIEELP-SSIERLLRLGHLDLSDCKRLKSLPSSLFKLKSLGVLNLGGCSNLQRLPECLGQLSSPIILNLAKTNVERI  262 (321)
Q Consensus       184 ~~~~i~~l~-~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~l  262 (321)
                      ++|.+++++ ..+..+++|++|++++|.+.+..+..++.+++|+.|++++|.+. .+|..+..+++|+.|++++|.++.+
T Consensus       201 ~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~l~~~  279 (332)
T 2ft3_A          201 DHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLS-RVPAGLPDLKLLQVVYLHTNNITKV  279 (332)
T ss_dssp             CSSCCCCCCTTSSTTCTTCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSSCCC-BCCTTGGGCTTCCEEECCSSCCCBC
T ss_pred             CCCcCCccCHHHhcCCCCCCEEECCCCcCCcCChhHhhCCCCCCEEECCCCcCe-ecChhhhcCccCCEEECCCCCCCcc
Confidence            999999977 56889999999999999988877778999999999999998766 7888899999999999999999987


Q ss_pred             ch-hhhc------cCCcCEEeccCCCC
Q 037308          263 PE-SIIQ------LFVLRYLLLSYSER  282 (321)
Q Consensus       263 ~~-~l~~------l~~L~~L~l~~n~~  282 (321)
                      +. .+..      .+.|+.|++.+|+.
T Consensus       280 ~~~~~~~~~~~~~~~~l~~L~l~~N~~  306 (332)
T 2ft3_A          280 GVNDFCPVGFGVKRAYYNGISLFNNPV  306 (332)
T ss_dssp             CTTSSSCSSCCSSSCCBSEEECCSSSS
T ss_pred             ChhHccccccccccccccceEeecCcc
Confidence            74 3332      46789999999953

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=99.93  E-value=4.2e-26  Score=214.69  Aligned_cols=278  Identities=16%  Similarity=0.157  Sum_probs=169.2

Q ss_pred             eecCchhhhccChhhhcCCCCceEEEEeecCCCCccccceeccCCCCc-CcccEEEecCCCCCCCCCcCCcCceeEEecc
Q 037308           10 LDMSTVKEIRLNLSTFTKMPKLRFLKFYSSSFNGENKCKVSYLQDPRF-AEVKYFHWHGYPLKSLPSNLSAEKLVFLKVP   88 (321)
Q Consensus        10 l~~~~~~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~l~~-~~L~~l~l~~~~l~~~~~~~~l~~L~~L~l~   88 (321)
                      ||++++......+..+..+++|++|++++|.++      ...+..+.. ++|++|++++|.+..+|.. .+++|++|+++
T Consensus        26 L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~------~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~-~l~~L~~L~L~   98 (520)
T 2z7x_B           26 LNISQNYISELWTSDILSLSKLRILIISHNRIQ------YLDISVFKFNQELEYLDLSHNKLVKISCH-PTVNLKHLDLS   98 (520)
T ss_dssp             EECCSSCCCCCCHHHHTTCTTCCEEECCSSCCC------EEEGGGGTTCTTCCEEECCSSCCCEEECC-CCCCCSEEECC
T ss_pred             EECCCCcccccChhhccccccccEEecCCCccC------CcChHHhhcccCCCEEecCCCceeecCcc-ccCCccEEecc
Confidence            455566555666677888888888888888754      223445555 8888888888888888777 88888899998


Q ss_pred             CCccccc--ccCCCCCCChHhHHhhccccccccCCCCCCCCCCCCc--cEEEccCCCC--CcccCccccC----------
Q 037308           89 YSDIEQL--WNGEKHYSNLNQIINATCNKLIAKTPNPTLMPHLNKL--VILNLRGSKS--LKSLPSGIFN----------  152 (321)
Q Consensus        89 ~~~l~~~--~~~~~~l~~L~~~l~l~~~~l~~~~~~~~~~~~l~~L--~~L~l~~n~~--~~~~p~~l~~----------  152 (321)
                      +|.++.+  +..++.+++|+. ++++.|.+++   .  .+..+++|  ++|++++|.+  .+..|..+..          
T Consensus        99 ~N~l~~~~~p~~~~~l~~L~~-L~L~~n~l~~---~--~~~~l~~L~L~~L~l~~n~l~~~~~~~~~l~~l~~~~l~l~l  172 (520)
T 2z7x_B           99 FNAFDALPICKEFGNMSQLKF-LGLSTTHLEK---S--SVLPIAHLNISKVLLVLGETYGEKEDPEGLQDFNTESLHIVF  172 (520)
T ss_dssp             SSCCSSCCCCGGGGGCTTCCE-EEEEESSCCG---G--GGGGGTTSCEEEEEEEECTTTTSSCCTTTTTTCCEEEEEEEC
T ss_pred             CCccccccchhhhccCCcceE-EEecCcccch---h--hccccccceeeEEEeecccccccccccccccccccceEEEEe
Confidence            8888763  467788888888 8888888873   1  45666677  8888888876  4444444433          


Q ss_pred             ----------------cccCcEEecCCCC------------------------------Cccc----ccc-cccCCccEE
Q 037308          153 ----------------LEFLTKLDLSGCS------------------------------KLKR----LLE-ISSGNINWL  181 (321)
Q Consensus       153 ----------------l~~L~~L~l~~~~------------------------------~~~~----~~~-~~~~~L~~L  181 (321)
                                      +++|+.+++++|.                              ..+.    ++. ...++|++|
T Consensus       173 ~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~L~~L  252 (520)
T 2z7x_B          173 PTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILAKLQTNPKLSNLTLNNIETTWNSFIRILQLVWHTTVWYF  252 (520)
T ss_dssp             CSSSCCCCCCCCCCTTCSEEEECCEEECCSTTTTHHHHHHHHGGGGCTTCCEEEEEEEEEEHHHHHHHHHHHHTSSCSEE
T ss_pred             ccCcchhhhhhhhhhcccceeeccccccccccccceeecchhhhccccchhhccccccccCHHHHHHHHHHhhhCcccEE
Confidence                            3333333333321                              0000    000 001123333


Q ss_pred             Eecccccc-ccChhh-----------------------------------------------------hccCCCCeEecc
Q 037308          182 FLRETAIE-ELPSSI-----------------------------------------------------ERLLRLGHLDLS  207 (321)
Q Consensus       182 ~l~~~~i~-~l~~~~-----------------------------------------------------~~l~~L~~L~l~  207 (321)
                      ++++|.++ .+|..+                                                     ..+++|++|+++
T Consensus       253 ~l~~n~l~~~~p~~~~~~~~~~l~~L~~l~l~~n~~~~p~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~l~~L~~L~Ls  332 (520)
T 2z7x_B          253 SISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVFGFPQSYIYEIFSNMNIKNFTVSGTRMVHMLCPSKISPFLHLDFS  332 (520)
T ss_dssp             EEEEEEEESCCCCCCCCCCSCCCCEEEEEEEEECCCCSCTHHHHHHHHTCCCSEEEEESSCCCCCCCCSSCCCCCEEECC
T ss_pred             EeecccccCccccchhhcccccCceeEeccccccceecchhhhhcccccCceeEEEcCCCccccccchhhCCcccEEEeE
Confidence            33333322 121111                                                     345667777777


Q ss_pred             cCcccccccccccCCCCCCEEEecCCCCCC--ccccccCCCCCCcEEEcccCCCcc-cchh-hhccCCcCEEeccCCCCc
Q 037308          208 DCKRLKSLPSSLFKLKSLGVLNLGGCSNLQ--RLPECLGQLSSPIILNLAKTNVER-IPES-IIQLFVLRYLLLSYSERI  283 (321)
Q Consensus       208 ~n~~~~~~~~~~~~l~~L~~L~l~~~~~~~--~~~~~~~~~~~L~~L~l~~n~l~~-l~~~-l~~l~~L~~L~l~~n~~l  283 (321)
                      +|.+.+..|..++.+++|+.|++++|.+.+  .+|..+..+++|+.|++++|.++. +|.. +..+++|++|++++|..-
T Consensus       333 ~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~~~~l~~L~~L~Ls~N~l~  412 (520)
T 2z7x_B          333 NNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILT  412 (520)
T ss_dssp             SSCCCTTTTTTCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBCCGGGCSCCCCTTCCEEECCSSCCC
T ss_pred             CCccChhhhhhhccCCCCCEEEccCCccCccccchHHHhhCCCCCEEECCCCcCCcccccchhccCccCCEEECcCCCCC
Confidence            777666666666677777777777766654  445566667777777777777764 6643 455566666666666322


Q ss_pred             cccc--Ccccccccccccc
Q 037308          284 QSVS--LPLARGILEDTQR  300 (321)
Q Consensus       284 ~~~~--~~~~l~~l~~~~~  300 (321)
                      ..++  ++++++.|++.++
T Consensus       413 ~~~~~~l~~~L~~L~Ls~N  431 (520)
T 2z7x_B          413 DTIFRCLPPRIKVLDLHSN  431 (520)
T ss_dssp             GGGGGSCCTTCCEEECCSS
T ss_pred             cchhhhhcccCCEEECCCC
Confidence            3333  3345555555554

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A

Probab=99.93  E-value=6e-25  Score=204.19  Aligned_cols=270  Identities=17%  Similarity=0.173  Sum_probs=215.2

Q ss_pred             eecCchhhhccChhhhcCCCCceEEEEeecCCCCccccceeccCCCCc-CcccEEEecCCCCCCCCCcCCcCceeEEecc
Q 037308           10 LDMSTVKEIRLNLSTFTKMPKLRFLKFYSSSFNGENKCKVSYLQDPRF-AEVKYFHWHGYPLKSLPSNLSAEKLVFLKVP   88 (321)
Q Consensus        10 l~~~~~~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~l~~-~~L~~l~l~~~~l~~~~~~~~l~~L~~L~l~   88 (321)
                      ||++++......+  ++.+++|++|++++|.+++..       . +.. ++|++|++++|.+..++....+++|++|+++
T Consensus        73 L~Ls~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~-------~-~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~l~  142 (466)
T 1o6v_A           73 INFSNNQLTDITP--LKNLTKLVDILMNNNQIADIT-------P-LANLTNLTGLTLFNNQITDIDPLKNLTNLNRLELS  142 (466)
T ss_dssp             EECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCCG-------G-GTTCTTCCEEECCSSCCCCCGGGTTCTTCSEEEEE
T ss_pred             EECCCCccCCchh--hhccccCCEEECCCCccccCh-------h-hcCCCCCCEEECCCCCCCCChHHcCCCCCCEEECC
Confidence            3445554444432  899999999999999755321       1 555 9999999999999988875589999999999


Q ss_pred             CCccccccc--------------------CCCCCCChHhHHhhccccccccCCCCCCCCCCCCccEEEccCCCCCcccCc
Q 037308           89 YSDIEQLWN--------------------GEKHYSNLNQIINATCNKLIAKTPNPTLMPHLNKLVILNLRGSKSLKSLPS  148 (321)
Q Consensus        89 ~~~l~~~~~--------------------~~~~l~~L~~~l~l~~~~l~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~  148 (321)
                      +|.+..++.                    .+..+++|+. ++++.|.+. .++   .+..+++|++|++++|.+.+..| 
T Consensus       143 ~n~l~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~L~~-L~l~~n~l~-~~~---~l~~l~~L~~L~l~~n~l~~~~~-  216 (466)
T 1o6v_A          143 SNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLER-LDISSNKVS-DIS---VLAKLTNLESLIATNNQISDITP-  216 (466)
T ss_dssp             EEEECCCGGGTTCTTCSEEEEEESCCCCGGGTTCTTCCE-EECCSSCCC-CCG---GGGGCTTCSEEECCSSCCCCCGG-
T ss_pred             CCccCCChhhccCCcccEeecCCcccCchhhccCCCCCE-EECcCCcCC-CCh---hhccCCCCCEEEecCCccccccc-
Confidence            998877532                    1345566777 888888887 554   57889999999999998555444 


Q ss_pred             cccCcccCcEEecCCCCCccccccc-ccCCccEEEeccccccccChhhhccCCCCeEecccCcccccccccccCCCCCCE
Q 037308          149 GIFNLEFLTKLDLSGCSKLKRLLEI-SSGNINWLFLRETAIEELPSSIERLLRLGHLDLSDCKRLKSLPSSLFKLKSLGV  227 (321)
Q Consensus       149 ~l~~l~~L~~L~l~~~~~~~~~~~~-~~~~L~~L~l~~~~i~~l~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~  227 (321)
                       ++.+++|+.|++++|...+ ++.. .+++|++|++++|.+++++. +..+++|++|++++|.+.+..+  +..+++|+.
T Consensus       217 -~~~l~~L~~L~l~~n~l~~-~~~l~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~  291 (466)
T 1o6v_A          217 -LGILTNLDELSLNGNQLKD-IGTLASLTNLTDLDLANNQISNLAP-LSGLTKLTELKLGANQISNISP--LAGLTALTN  291 (466)
T ss_dssp             -GGGCTTCCEEECCSSCCCC-CGGGGGCTTCSEEECCSSCCCCCGG-GTTCTTCSEEECCSSCCCCCGG--GTTCTTCSE
T ss_pred             -ccccCCCCEEECCCCCccc-chhhhcCCCCCEEECCCCccccchh-hhcCCCCCEEECCCCccCcccc--ccCCCccCe
Confidence             7789999999999976443 3333 58899999999999998876 8889999999999999776544  789999999


Q ss_pred             EEecCCCCCCccccccCCCCCCcEEEcccCCCcccchhhhccCCcCEEeccCCCCccccc---CccccccccccccCccc
Q 037308          228 LNLGGCSNLQRLPECLGQLSSPIILNLAKTNVERIPESIIQLFVLRYLLLSYSERIQSVS---LPLARGILEDTQRSPHM  304 (321)
Q Consensus       228 L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~l~~~l~~l~~L~~L~l~~n~~l~~~~---~~~~l~~l~~~~~~~~~  304 (321)
                      |++++|.+.+..+  +..+++|+.|++++|.++.++. +..+++|++|++++| .++.++   ..++++.|++.++.-..
T Consensus       292 L~L~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~-~~~l~~L~~L~l~~n-~l~~~~~l~~l~~L~~L~l~~n~l~~  367 (466)
T 1o6v_A          292 LELNENQLEDISP--ISNLKNLTYLTLYFNNISDISP-VSSLTKLQRLFFYNN-KVSDVSSLANLTNINWLSAGHNQISD  367 (466)
T ss_dssp             EECCSSCCSCCGG--GGGCTTCSEEECCSSCCSCCGG-GGGCTTCCEEECCSS-CCCCCGGGTTCTTCCEEECCSSCCCB
T ss_pred             EEcCCCcccCchh--hcCCCCCCEEECcCCcCCCchh-hccCccCCEeECCCC-ccCCchhhccCCCCCEEeCCCCccCc
Confidence            9999998776543  7889999999999999997765 788999999999999 777776   44678888888765443

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=99.93  E-value=1.8e-25  Score=212.41  Aligned_cols=126  Identities=20%  Similarity=0.250  Sum_probs=97.1

Q ss_pred             cCCccEEEeccccccccCh--hhhccCCCCeEecccCcccccccccccCCCCCCEEEecCCCCC-CccccccCCCCCCcE
Q 037308          175 SGNINWLFLRETAIEELPS--SIERLLRLGHLDLSDCKRLKSLPSSLFKLKSLGVLNLGGCSNL-QRLPECLGQLSSPII  251 (321)
Q Consensus       175 ~~~L~~L~l~~~~i~~l~~--~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~~~~~-~~~~~~~~~~~~L~~  251 (321)
                      +++|+.|++++|.+.+.+.  .+..+++|++|++++|.+.+..+..+..+++|+.|++++|.+. +.+|..+..+++|+.
T Consensus       395 l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~  474 (570)
T 2z63_A          395 LEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTF  474 (570)
T ss_dssp             CTTCCEEECTTSEEESCTTSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCE
T ss_pred             cCCCCEEEccCCccccccchhhhhcCCCCCEEeCcCCcccccchhhhhcCCcCcEEECcCCcCccccchhhhhcccCCCE
Confidence            5566666666666665432  4667778888888888777777777888888888888888776 467788889999999


Q ss_pred             EEcccCCCccc-chhhhccCCcCEEeccCCCCccccc-----CccccccccccccC
Q 037308          252 LNLAKTNVERI-PESIIQLFVLRYLLLSYSERIQSVS-----LPLARGILEDTQRS  301 (321)
Q Consensus       252 L~l~~n~l~~l-~~~l~~l~~L~~L~l~~n~~l~~~~-----~~~~l~~l~~~~~~  301 (321)
                      |++++|+++.+ |..+..+++|++|++++| .++.++     ..++++.+++.++.
T Consensus       475 L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~N~  529 (570)
T 2z63_A          475 LDLSQCQLEQLSPTAFNSLSSLQVLNMASN-QLKSVPDGIFDRLTSLQKIWLHTNP  529 (570)
T ss_dssp             EECTTSCCCEECTTTTTTCTTCCEEECCSS-CCSCCCTTTTTTCTTCCEEECCSSC
T ss_pred             EECCCCccccCChhhhhcccCCCEEeCCCC-cCCCCCHHHhhcccCCcEEEecCCc
Confidence            99999999966 678888999999999999 777765     23567777777744

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=99.93  E-value=2.5e-25  Score=197.79  Aligned_cols=256  Identities=16%  Similarity=0.191  Sum_probs=210.1

Q ss_pred             CCceEEEEeecCCCCccccceeccCCCCcCcccEEEecCCCCCCCCC-cC-CcCceeEEeccCCccccc-ccCCCCCCCh
Q 037308           29 PKLRFLKFYSSSFNGENKCKVSYLQDPRFAEVKYFHWHGYPLKSLPS-NL-SAEKLVFLKVPYSDIEQL-WNGEKHYSNL  105 (321)
Q Consensus        29 ~~L~~L~l~~n~~~~~~~~~~~~~~~l~~~~L~~l~l~~~~l~~~~~-~~-~l~~L~~L~l~~~~l~~~-~~~~~~l~~L  105 (321)
                      .+++.++++++.++       ..+..+ .++|+.|++++|.+..++. .+ .+++|++|++++|.++.+ +..+..+++|
T Consensus        33 c~l~~l~~~~~~l~-------~ip~~~-~~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L  104 (332)
T 2ft3_A           33 CHLRVVQCSDLGLK-------AVPKEI-SPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKL  104 (332)
T ss_dssp             EETTEEECCSSCCS-------SCCSCC-CTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTC
T ss_pred             ccCCEEECCCCCcc-------ccCCCC-CCCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCC
Confidence            37999999887643       122222 2789999999999988765 34 899999999999999987 5678899999


Q ss_pred             HhHHhhccccccccCCCCCCCCCCCCccEEEccCCCCCcccCccccCcccCcEEecCCCCCcc--ccccc-ccCCccEEE
Q 037308          106 NQIINATCNKLIAKTPNPTLMPHLNKLVILNLRGSKSLKSLPSGIFNLEFLTKLDLSGCSKLK--RLLEI-SSGNINWLF  182 (321)
Q Consensus       106 ~~~l~l~~~~l~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~l~~l~~L~~L~l~~~~~~~--~~~~~-~~~~L~~L~  182 (321)
                      +. ++++.|.++ .+|.  .+.  ++|++|++++|.+....+..+..+++|+.|++++|....  ..+.. ...+|++|+
T Consensus       105 ~~-L~L~~n~l~-~l~~--~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~L~~L~  178 (332)
T 2ft3_A          105 QK-LYISKNHLV-EIPP--NLP--SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGLKLNYLR  178 (332)
T ss_dssp             CE-EECCSSCCC-SCCS--SCC--TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSCCCSCCB
T ss_pred             CE-EECCCCcCC-ccCc--ccc--ccCCEEECCCCccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCCccCEEE
Confidence            99 999999999 8875  443  899999999999655445568899999999999986532  22222 112899999


Q ss_pred             eccccccccChhhhccCCCCeEecccCcccccccccccCCCCCCEEEecCCCCCCccccccCCCCCCcEEEcccCCCccc
Q 037308          183 LRETAIEELPSSIERLLRLGHLDLSDCKRLKSLPSSLFKLKSLGVLNLGGCSNLQRLPECLGQLSSPIILNLAKTNVERI  262 (321)
Q Consensus       183 l~~~~i~~l~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~l  262 (321)
                      +++|.++++|..+.  ++|++|++++|.+.+..+..+..+++|+.|++++|.+.+..+..+..+++|+.|++++|+++.+
T Consensus       179 l~~n~l~~l~~~~~--~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~l  256 (332)
T 2ft3_A          179 ISEAKLTGIPKDLP--ETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLSRV  256 (332)
T ss_dssp             CCSSBCSSCCSSSC--SSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSSCCCBC
T ss_pred             CcCCCCCccCcccc--CCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCcCChhHhhCCCCCCEEECCCCcCeec
Confidence            99999999987654  7899999999998888878899999999999999998888777899999999999999999999


Q ss_pred             chhhhccCCcCEEeccCCCCccccc---C--------ccccccccccccC
Q 037308          263 PESIIQLFVLRYLLLSYSERIQSVS---L--------PLARGILEDTQRS  301 (321)
Q Consensus       263 ~~~l~~l~~L~~L~l~~n~~l~~~~---~--------~~~l~~l~~~~~~  301 (321)
                      |..+..+++|++|++++| .++.++   .        ...++.+++.+..
T Consensus       257 p~~l~~l~~L~~L~l~~N-~l~~~~~~~~~~~~~~~~~~~l~~L~l~~N~  305 (332)
T 2ft3_A          257 PAGLPDLKLLQVVYLHTN-NITKVGVNDFCPVGFGVKRAYYNGISLFNNP  305 (332)
T ss_dssp             CTTGGGCTTCCEEECCSS-CCCBCCTTSSSCSSCCSSSCCBSEEECCSSS
T ss_pred             ChhhhcCccCCEEECCCC-CCCccChhHccccccccccccccceEeecCc
Confidence            999999999999999999 788876   1        2345666666543

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=99.93  E-value=1.4e-25  Score=213.29  Aligned_cols=124  Identities=19%  Similarity=0.250  Sum_probs=79.5

Q ss_pred             CccEEEeccccccccChhhhccCCCCeEecccCccccccc-ccccCCCCCCEEEecCCCCCCccccccCCCCCCcEEEcc
Q 037308          177 NINWLFLRETAIEELPSSIERLLRLGHLDLSDCKRLKSLP-SSLFKLKSLGVLNLGGCSNLQRLPECLGQLSSPIILNLA  255 (321)
Q Consensus       177 ~L~~L~l~~~~i~~l~~~~~~l~~L~~L~l~~n~~~~~~~-~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~  255 (321)
                      +|++|++++|.+.+++..+..+++|++|++++|.+.+..+ ..+..+++|+.|++++|.+.+..+..+.++++|+.|+++
T Consensus       374 ~L~~L~l~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~  453 (570)
T 2z63_A          374 SLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMA  453 (570)
T ss_dssp             CCCEEECCSCSEEEEEEEEETCTTCCEEECTTSEEESCTTSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECT
T ss_pred             ccCEEECCCCccccccccccccCCCCEEEccCCccccccchhhhhcCCCCCEEeCcCCcccccchhhhhcCCcCcEEECc
Confidence            3444444444444433334445555555555555444433 346667777777777777766677777788888888888


Q ss_pred             cCCCc--ccchhhhccCCcCEEeccCCCCcccc-c----CccccccccccccC
Q 037308          256 KTNVE--RIPESIIQLFVLRYLLLSYSERIQSV-S----LPLARGILEDTQRS  301 (321)
Q Consensus       256 ~n~l~--~l~~~l~~l~~L~~L~l~~n~~l~~~-~----~~~~l~~l~~~~~~  301 (321)
                      +|.++  .+|..+..+++|++|++++| .++.+ |    ..++++.|++.++.
T Consensus       454 ~n~l~~~~~p~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~n~  505 (570)
T 2z63_A          454 GNSFQENFLPDIFTELRNLTFLDLSQC-QLEQLSPTAFNSLSSLQVLNMASNQ  505 (570)
T ss_dssp             TCEEGGGEECSCCTTCTTCCEEECTTS-CCCEECTTTTTTCTTCCEEECCSSC
T ss_pred             CCcCccccchhhhhcccCCCEEECCCC-ccccCChhhhhcccCCCEEeCCCCc
Confidence            88876  57777788888888888888 56555 3    23567777776653

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=99.93  E-value=2.3e-25  Score=221.16  Aligned_cols=280  Identities=15%  Similarity=0.157  Sum_probs=202.3

Q ss_pred             eecCch-hhhccChhhhcCCCCceEEEEeecCCCCccccceeccCCCCc-CcccEEEecCCCCCC-CCCc--C-CcCcee
Q 037308           10 LDMSTV-KEIRLNLSTFTKMPKLRFLKFYSSSFNGENKCKVSYLQDPRF-AEVKYFHWHGYPLKS-LPSN--L-SAEKLV   83 (321)
Q Consensus        10 l~~~~~-~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~l~~-~~L~~l~l~~~~l~~-~~~~--~-~l~~L~   83 (321)
                      ||++++ ....+.+.+|+.+++|++|++++|.++      ...+..+.. ++|++|++++|.+.. ++..  + .+++|+
T Consensus        53 LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~------~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~  126 (844)
T 3j0a_A           53 LELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIY------FLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALT  126 (844)
T ss_dssp             EEECTTCCCCEECTTTTSSCTTCCEEECTTCCCC------EECTTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCC
T ss_pred             EeCCCCCCccccCHHHhcCCCCCCEEECCCCcCc------ccCHhHccCCcccCEeeCcCCCCCcccccCccccccCCCC
Confidence            344444 234555677888888888888887744      233445555 777777777776654 3332  3 677777


Q ss_pred             EEeccCCcccccc--cCCCCCCChHhHHhhcccccc--------------------------ccCCCCCCCCCCC-----
Q 037308           84 FLKVPYSDIEQLW--NGEKHYSNLNQIINATCNKLI--------------------------AKTPNPTLMPHLN-----  130 (321)
Q Consensus        84 ~L~l~~~~l~~~~--~~~~~l~~L~~~l~l~~~~l~--------------------------~~~~~~~~~~~l~-----  130 (321)
                      +|++++|.+..+.  ..+..+++|+. |+++.|.+.                          +..+.  .+..+.     
T Consensus       127 ~L~Ls~N~l~~~~~~~~~~~L~~L~~-L~Ls~N~i~~~~~~~l~~l~~~~L~~L~L~~n~l~~~~~~--~~~~~~~~~~~  203 (844)
T 3j0a_A          127 RLDLSKNQIRSLYLHPSFGKLNSLKS-IDFSSNQIFLVCEHELEPLQGKTLSFFSLAANSLYSRVSV--DWGKCMNPFRN  203 (844)
T ss_dssp             EEEEESCCCCCCCCCGGGGTCSSCCE-EEEESSCCCCCCSGGGHHHHHCSSCCCEECCSBSCCCCCC--CCCSSSCTTTT
T ss_pred             EEECCCCcccccccchhHhhCCCCCE-EECCCCcCCeeCHHHcccccCCccceEECCCCcccccccc--chhhcCCcccc
Confidence            7777777766543  24566666666 666555554                          22222  333333     


Q ss_pred             -CccEEEccCCCCCcccCcccc------------------------------------C--cccCcEEecCCCCCccccc
Q 037308          131 -KLVILNLRGSKSLKSLPSGIF------------------------------------N--LEFLTKLDLSGCSKLKRLL  171 (321)
Q Consensus       131 -~L~~L~l~~n~~~~~~p~~l~------------------------------------~--l~~L~~L~l~~~~~~~~~~  171 (321)
                       .|+.|++++|.+.+..+..+.                                    .  .++|+.|++++|...+..+
T Consensus       204 ~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~~~~~~~l~~~~~~~f~~l~~~~L~~L~Ls~n~l~~~~~  283 (844)
T 3j0a_A          204 MVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNS  283 (844)
T ss_dssp             CCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCCBCSSSCSSSTTGGGTTTTTTTTSCCCEEECTTCCCCEECS
T ss_pred             CceeEEecCCCcCchhHHHHHHhhcCcccccceecccccccccccccccCCCChhhhhccccCCccEEECCCCcccccCh
Confidence             389999999865544333221                                    1  2689999999977554444


Q ss_pred             cc--ccCCccEEEeccccccccC-hhhhccCCCCeEecccCcccccccccccCCCCCCEEEecCCCCCCccccccCCCCC
Q 037308          172 EI--SSGNINWLFLRETAIEELP-SSIERLLRLGHLDLSDCKRLKSLPSSLFKLKSLGVLNLGGCSNLQRLPECLGQLSS  248 (321)
Q Consensus       172 ~~--~~~~L~~L~l~~~~i~~l~-~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~  248 (321)
                      ..  .+++|+.|++++|.+++++ ..+..+++|++|++++|.+.+..+..+..+++|+.|++++|.+....+..+..+++
T Consensus       284 ~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~  363 (844)
T 3j0a_A          284 RVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEK  363 (844)
T ss_dssp             CCSSSCCCCCEEEEESCCCCEECTTTTTTCSSCCEEEEESCCCSCCCSCSCSSCTTCCEEECCSCCCCCCCSSCSCSCCC
T ss_pred             hhhhcCCCCCEEECCCCcCCCCChHHhcCCCCCCEEECCCCCCCccCHHHhcCCCCCCEEECCCCCCCccChhhhcCCCC
Confidence            33  4789999999999999865 56889999999999999988888889999999999999999887777778999999


Q ss_pred             CcEEEcccCCCcccchhhhccCCcCEEeccCCCCccccc-CccccccccccccCcc
Q 037308          249 PIILNLAKTNVERIPESIIQLFVLRYLLLSYSERIQSVS-LPLARGILEDTQRSPH  303 (321)
Q Consensus       249 L~~L~l~~n~l~~l~~~l~~l~~L~~L~l~~n~~l~~~~-~~~~l~~l~~~~~~~~  303 (321)
                      |+.|++++|.++.++.    +++|++|++++| .+..+| .+.+++.+++....-.
T Consensus       364 L~~L~Ls~N~l~~i~~----~~~L~~L~l~~N-~l~~l~~~~~~l~~L~ls~N~l~  414 (844)
T 3j0a_A          364 LQTLDLRDNALTTIHF----IPSIPDIFLSGN-KLVTLPKINLTANLIHLSENRLE  414 (844)
T ss_dssp             CCEEEEETCCSCCCSS----CCSCSEEEEESC-CCCCCCCCCTTCCEEECCSCCCC
T ss_pred             CCEEECCCCCCCcccC----CCCcchhccCCC-CcccccccccccceeecccCccc
Confidence            9999999999997764    789999999999 888888 6677888887775444

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=99.93  E-value=9.4e-25  Score=211.92  Aligned_cols=285  Identities=20%  Similarity=0.147  Sum_probs=164.7

Q ss_pred             ecCchhhhccChhhhcCCCCceEEEEeecCCCCcccccee-----------------------cc----CCCCc-CcccE
Q 037308           11 DMSTVKEIRLNLSTFTKMPKLRFLKFYSSSFNGENKCKVS-----------------------YL----QDPRF-AEVKY   62 (321)
Q Consensus        11 ~~~~~~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~-----------------------~~----~~l~~-~~L~~   62 (321)
                      +++++......+..++.+++|++|++++|.+++..+....                       .+    ..+.. ++|++
T Consensus       254 ~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~lp~i~~~~~~~l~~L~~  333 (680)
T 1ziw_A          254 DLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEH  333 (680)
T ss_dssp             ECTTSCCCEECTTTTTTCTTCCEEECCSCCBSEECTTTTTTCTTCCEEECTTCBCCC------CCEECTTTTTTCTTCCE
T ss_pred             ECCCCCcCccCcccccCcccccEeeCCCCccCccChhhhcCCCCccEEeccchhhhcccccccccccChhhcccCCCCCE
Confidence            3444444444556677788888888888775543221100                       00    02333 66777


Q ss_pred             EEecCCCCCCCCCc-C-CcCceeEEeccCCccc--ccccC-CC--CCCChHhHHhhccccccccCCCCCCCCCCCCccEE
Q 037308           63 FHWHGYPLKSLPSN-L-SAEKLVFLKVPYSDIE--QLWNG-EK--HYSNLNQIINATCNKLIAKTPNPTLMPHLNKLVIL  135 (321)
Q Consensus        63 l~l~~~~l~~~~~~-~-~l~~L~~L~l~~~~l~--~~~~~-~~--~l~~L~~~l~l~~~~l~~~~~~~~~~~~l~~L~~L  135 (321)
                      +++++|.+..++.. + .+++|++|++++|.+.  .++.. +.  ..+.++. ++++.|.+.+..+.  .+..+++|++|
T Consensus       334 L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~l~~~~f~~~~~~~L~~-L~L~~n~l~~~~~~--~~~~l~~L~~L  410 (680)
T 1ziw_A          334 LNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHI-LNLTKNKISKIESD--AFSWLGHLEVL  410 (680)
T ss_dssp             EECCSCCBCCCCTTTTTTCTTCCEEECTTCBSCCCEECTTTTGGGTTSCCCE-EECTTSCCCEECTT--TTTTCTTCCEE
T ss_pred             EECCCCccCCCChhHhccccCCcEEECCCCchhhhhcchhhhcccccCcCce-EECCCCCCCeEChh--hhhCCCCCCEE
Confidence            77777766555443 2 5666666666555421  11110 00  1123333 44444444422232  45555555555


Q ss_pred             EccCCCCCcccC-ccccCcccCcEEecCCCC------------------------Cc--cccccc--ccCCccEEEeccc
Q 037308          136 NLRGSKSLKSLP-SGIFNLEFLTKLDLSGCS------------------------KL--KRLLEI--SSGNINWLFLRET  186 (321)
Q Consensus       136 ~l~~n~~~~~~p-~~l~~l~~L~~L~l~~~~------------------------~~--~~~~~~--~~~~L~~L~l~~~  186 (321)
                      ++++|.+.+.+| ..+..+++|+.|++++|.                        ..  +..|..  .+++|++|++++|
T Consensus       411 ~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~p~~~~~l~~L~~L~Ls~N  490 (680)
T 1ziw_A          411 DLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNN  490 (680)
T ss_dssp             ECCSSCCEEECCSGGGTTCTTCCEEECCSCSEEECCTTTTTTCTTCCEEECTTSCCBCTTCSSCTTTTCTTCCEEECCSS
T ss_pred             eCCCCcCccccCcccccCcccccEEecCCCCcceeChhhhhcCcccccchhccccccccccCCcccccCCCCCEEECCCC
Confidence            555555443333 234445555555555443                        21  122222  3567778888888


Q ss_pred             cccccCh-hhhccCCCCeEecccCccccccc--------ccccCCCCCCEEEecCCCCCCccccccCCCCCCcEEEcccC
Q 037308          187 AIEELPS-SIERLLRLGHLDLSDCKRLKSLP--------SSLFKLKSLGVLNLGGCSNLQRLPECLGQLSSPIILNLAKT  257 (321)
Q Consensus       187 ~i~~l~~-~~~~l~~L~~L~l~~n~~~~~~~--------~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n  257 (321)
                      .+++++. .+..+++|++|++++|.+.+..+        ..+.++++|+.|++++|.+....+..|.++++|+.|++++|
T Consensus       491 ~l~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N  570 (680)
T 1ziw_A          491 NIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKIIDLGLN  570 (680)
T ss_dssp             CCCCCCTTTTTTCTTCCEEECCSSCCGGGGSTTSTTSCCCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred             CCCcCChhhhccccccCEEeCCCCCccccchhhccCCcchhhcCCCCCCEEECCCCCCCCCCHHHcccccCcceeECCCC
Confidence            8777664 36777788888888877654311        23667788888888887766443346788888888888888


Q ss_pred             CCcccchh-hhccCCcCEEeccCCCCccccc---C---ccccccccccc
Q 037308          258 NVERIPES-IIQLFVLRYLLLSYSERIQSVS---L---PLARGILEDTQ  299 (321)
Q Consensus       258 ~l~~l~~~-l~~l~~L~~L~l~~n~~l~~~~---~---~~~l~~l~~~~  299 (321)
                      +++.+|.. +..+++|++|++++| .++.++   .   .++++.+++.+
T Consensus       571 ~l~~l~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~~~~~L~~l~l~~  618 (680)
T 1ziw_A          571 NLNTLPASVFNNQVSLKSLNLQKN-LITSVEKKVFGPAFRNLTELDMRF  618 (680)
T ss_dssp             CCCCCCTTTTTTCTTCCEEECTTS-CCCBCCHHHHHHHHTTCSEEECTT
T ss_pred             CCCcCCHhHhCCCCCCCEEECCCC-cCCccChhHhcccccccCEEEccC
Confidence            88877754 567888888888888 777765   1   25677777765

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=99.93  E-value=4.7e-25  Score=214.01  Aligned_cols=238  Identities=19%  Similarity=0.111  Sum_probs=146.6

Q ss_pred             eecCchhhhccChhhhcCCCCceEEEEeecCCCCccccceeccCCCCc-CcccEEEecCCCCCCCCCc-C-CcCceeEEe
Q 037308           10 LDMSTVKEIRLNLSTFTKMPKLRFLKFYSSSFNGENKCKVSYLQDPRF-AEVKYFHWHGYPLKSLPSN-L-SAEKLVFLK   86 (321)
Q Consensus        10 l~~~~~~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~l~~-~~L~~l~l~~~~l~~~~~~-~-~l~~L~~L~   86 (321)
                      ||++++......+..|+.+++|++|++++|.+++..      +..+.. ++|++|++++|.+..+|.. + .+++|++|+
T Consensus        30 L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~------~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~  103 (680)
T 1ziw_A           30 LNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLE------PELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELH  103 (680)
T ss_dssp             EECCSSCCCCCCGGGGGGGTTCSEEECCSSCCCCCC------TTHHHHCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEE
T ss_pred             EECCCCCCCCcCHHHHhCCCcCcEEECCCCccCccC------HHHHhcccCcCEEECCCCccCccChhhhccCCCCCEEE
Confidence            445555555666677888888999998888755322      233444 8888888888888888764 3 788888888


Q ss_pred             ccCCcccccc-cCCCCCCChHhHHhhccccccccCCCCCCCCCCCCccEEEccCCCCCcccCcccc--CcccCcEEecCC
Q 037308           87 VPYSDIEQLW-NGEKHYSNLNQIINATCNKLIAKTPNPTLMPHLNKLVILNLRGSKSLKSLPSGIF--NLEFLTKLDLSG  163 (321)
Q Consensus        87 l~~~~l~~~~-~~~~~l~~L~~~l~l~~~~l~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~l~--~l~~L~~L~l~~  163 (321)
                      +++|.+..++ ..+..+++|+. ++++.|.+.+..+.  .+..+++|++|++++|.+.+..+..+.  .+++|+.|++++
T Consensus       104 L~~n~l~~~~~~~~~~l~~L~~-L~Ls~n~l~~~~~~--~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~L~~  180 (680)
T 1ziw_A          104 LMSNSIQKIKNNPFVKQKNLIT-LDLSHNGLSSTKLG--TQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSS  180 (680)
T ss_dssp             CCSSCCCCCCSCTTTTCTTCCE-EECCSSCCSCCCCC--SSSCCTTCCEEECCSSCCCCBCHHHHGGGTTCEESEEECTT
T ss_pred             CCCCccCccChhHccccCCCCE-EECCCCcccccCch--hhcccccCCEEEccCCcccccCHHHhhccccccccEEECCC
Confidence            8888888776 45778888888 88888888744444  677888888888888875544443332  346777777777


Q ss_pred             CCCccccccc-----------------------------ccCCccEEEeccccccccC-hhhhccC--CCCeEecccCcc
Q 037308          164 CSKLKRLLEI-----------------------------SSGNINWLFLRETAIEELP-SSIERLL--RLGHLDLSDCKR  211 (321)
Q Consensus       164 ~~~~~~~~~~-----------------------------~~~~L~~L~l~~~~i~~l~-~~~~~l~--~L~~L~l~~n~~  211 (321)
                      |...+..+..                             ..++|+.|++++|.+++++ ..+..++  +|++|++++|.+
T Consensus       181 n~l~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~l~~~~L~~L~Ls~n~l  260 (680)
T 1ziw_A          181 NQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNL  260 (680)
T ss_dssp             CCCCCBCTTGGGGSSEECEEECTTCCCHHHHHHHHHHHHTTSCCCEEECTTSCCCEECTTTTGGGGGSCCCEEECTTSCC
T ss_pred             CcccccChhhhhhhhhhhhhhccccccChhhHHHHHHHhhhccccEEEccCCcccccChhHhhccCcCCCCEEECCCCCc
Confidence            6432221110                             0134455555555555432 2343332  255555555555


Q ss_pred             cccccccccCCCCCCEEEecCCCCCCccccccCCCCCCcEEEccc
Q 037308          212 LKSLPSSLFKLKSLGVLNLGGCSNLQRLPECLGQLSSPIILNLAK  256 (321)
Q Consensus       212 ~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~  256 (321)
                      .+..+..++.+++|+.|++++|.+.+..+..+.++++|+.|++++
T Consensus       261 ~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~  305 (680)
T 1ziw_A          261 NVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKR  305 (680)
T ss_dssp             CEECTTTTTTCTTCCEEECCSCCBSEECTTTTTTCTTCCEEECTT
T ss_pred             CccCcccccCcccccEeeCCCCccCccChhhhcCCCCccEEeccc
Confidence            554445555555555555555555444444444444444444433

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=99.93  E-value=3.7e-25  Score=210.29  Aligned_cols=141  Identities=18%  Similarity=0.222  Sum_probs=104.0

Q ss_pred             EeecCchhhhccChhhhcCCCCceEEEEeecCCCCccccceeccCCCCc-CcccEEEecCCCCCCCCC-cC-CcCceeEE
Q 037308            9 CLDMSTVKEIRLNLSTFTKMPKLRFLKFYSSSFNGENKCKVSYLQDPRF-AEVKYFHWHGYPLKSLPS-NL-SAEKLVFL   85 (321)
Q Consensus         9 ~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~l~~-~~L~~l~l~~~~l~~~~~-~~-~l~~L~~L   85 (321)
                      .+|++++....++...   .++|++|++++|.+++.      .+..+.. ++|++|++++|.+..++. .+ .+++|++|
T Consensus        35 ~l~ls~~~L~~ip~~~---~~~L~~L~Ls~N~i~~~------~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L  105 (562)
T 3a79_B           35 MVDYSNRNLTHVPKDL---PPRTKALSLSQNSISEL------RMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYL  105 (562)
T ss_dssp             EEECTTSCCCSCCTTS---CTTCCEEECCSSCCCCC------CGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEE
T ss_pred             EEEcCCCCCccCCCCC---CCCcCEEECCCCCcccc------ChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEE
Confidence            4666666555544322   27899999999986532      2234555 999999999999988744 44 79999999


Q ss_pred             eccCCcccccccCCCCCCChHhHHhhccccccccCCCCCCCCCCCCccEEEccCCCCCcccCccccCcccC--cEEecCC
Q 037308           86 KVPYSDIEQLWNGEKHYSNLNQIINATCNKLIAKTPNPTLMPHLNKLVILNLRGSKSLKSLPSGIFNLEFL--TKLDLSG  163 (321)
Q Consensus        86 ~l~~~~l~~~~~~~~~l~~L~~~l~l~~~~l~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~l~~l~~L--~~L~l~~  163 (321)
                      ++++|+++.++..  .+++|+. ++++.|.+. .++.+..+..+++|++|++++|.+...   .+..+++|  +.|+++.
T Consensus       106 ~Ls~N~l~~lp~~--~l~~L~~-L~Ls~N~l~-~l~~p~~~~~l~~L~~L~L~~n~l~~~---~~~~l~~L~L~~L~L~~  178 (562)
T 3a79_B          106 DVSHNRLQNISCC--PMASLRH-LDLSFNDFD-VLPVCKEFGNLTKLTFLGLSAAKFRQL---DLLPVAHLHLSCILLDL  178 (562)
T ss_dssp             ECTTSCCCEECSC--CCTTCSE-EECCSSCCS-BCCCCGGGGGCTTCCEEEEECSBCCTT---TTGGGTTSCEEEEEEEE
T ss_pred             ECCCCcCCccCcc--ccccCCE-EECCCCCcc-ccCchHhhcccCcccEEecCCCccccC---chhhhhhceeeEEEeec
Confidence            9999999988776  8899999 999999998 554223789999999999999985432   23344444  6666655


Q ss_pred             CC
Q 037308          164 CS  165 (321)
Q Consensus       164 ~~  165 (321)
                      |.
T Consensus       179 n~  180 (562)
T 3a79_B          179 VS  180 (562)
T ss_dssp             SS
T ss_pred             cc
Confidence            43

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}

Probab=99.93  E-value=1.3e-24  Score=201.15  Aligned_cols=232  Identities=18%  Similarity=0.140  Sum_probs=110.9

Q ss_pred             hcCCCCceEEEEeecCCCCccccceeccCCCCc-CcccEEEecCCCCCCCCCcCCcCceeEEeccCCcccccccCCCCCC
Q 037308           25 FTKMPKLRFLKFYSSSFNGENKCKVSYLQDPRF-AEVKYFHWHGYPLKSLPSNLSAEKLVFLKVPYSDIEQLWNGEKHYS  103 (321)
Q Consensus        25 l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~l~~-~~L~~l~l~~~~l~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~l~  103 (321)
                      ++.+++|++|++++|.+++.        + +.. ++|++|++++|.+..++ ...+++|++|++++|+++.++  +..++
T Consensus        60 l~~l~~L~~L~Ls~n~l~~~--------~-~~~l~~L~~L~Ls~N~l~~~~-~~~l~~L~~L~L~~N~l~~l~--~~~l~  127 (457)
T 3bz5_A           60 IEKLTGLTKLICTSNNITTL--------D-LSQNTNLTYLACDSNKLTNLD-VTPLTKLTYLNCDTNKLTKLD--VSQNP  127 (457)
T ss_dssp             GGGCTTCSEEECCSSCCSCC--------C-CTTCTTCSEEECCSSCCSCCC-CTTCTTCCEEECCSSCCSCCC--CTTCT
T ss_pred             hcccCCCCEEEccCCcCCeE--------c-cccCCCCCEEECcCCCCceee-cCCCCcCCEEECCCCcCCeec--CCCCC
Confidence            44455555555555543321        0 222 55555555555554443 224555555555555555432  44455


Q ss_pred             ChHhHHhhccccccccCCCCCCCCCCCCccEEEccCCCCCcccCccccCcccCcEEecCCCCCcccccccccCCccEEEe
Q 037308          104 NLNQIINATCNKLIAKTPNPTLMPHLNKLVILNLRGSKSLKSLPSGIFNLEFLTKLDLSGCSKLKRLLEISSGNINWLFL  183 (321)
Q Consensus       104 ~L~~~l~l~~~~l~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l  183 (321)
                      +|+. ++++.|.++ .+    .+..+++|++|++++|...+.++  +..+++|+.|++++|.. +.++...+++|+.|++
T Consensus       128 ~L~~-L~l~~N~l~-~l----~l~~l~~L~~L~l~~n~~~~~~~--~~~l~~L~~L~ls~n~l-~~l~l~~l~~L~~L~l  198 (457)
T 3bz5_A          128 LLTY-LNCARNTLT-EI----DVSHNTQLTELDCHLNKKITKLD--VTPQTQLTTLDCSFNKI-TELDVSQNKLLNRLNC  198 (457)
T ss_dssp             TCCE-EECTTSCCS-CC----CCTTCTTCCEEECTTCSCCCCCC--CTTCTTCCEEECCSSCC-CCCCCTTCTTCCEEEC
T ss_pred             cCCE-EECCCCccc-ee----ccccCCcCCEEECCCCCcccccc--cccCCcCCEEECCCCcc-ceeccccCCCCCEEEC
Confidence            5555 555555554 22    23445555555555554343332  44555555555555432 2233223455555555


Q ss_pred             ccccccccChhhhccCCCCeEecccCcccccccccccCCCCCCEEEecCCCCCCccccccCCCCCCcEEEcccCCCc---
Q 037308          184 RETAIEELPSSIERLLRLGHLDLSDCKRLKSLPSSLFKLKSLGVLNLGGCSNLQRLPECLGQLSSPIILNLAKTNVE---  260 (321)
Q Consensus       184 ~~~~i~~l~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~---  260 (321)
                      ++|.+++++  +..+++|++|++++|.+.+ +|  ++.+++|+.|++++|.+.+..   ++.+++|+.|+++.|.++   
T Consensus       199 ~~N~l~~~~--l~~l~~L~~L~Ls~N~l~~-ip--~~~l~~L~~L~l~~N~l~~~~---~~~l~~L~~L~l~~n~L~~L~  270 (457)
T 3bz5_A          199 DTNNITKLD--LNQNIQLTFLDCSSNKLTE-ID--VTPLTQLTYFDCSVNPLTELD---VSTLSKLTTLHCIQTDLLEID  270 (457)
T ss_dssp             CSSCCSCCC--CTTCTTCSEEECCSSCCSC-CC--CTTCTTCSEEECCSSCCSCCC---CTTCTTCCEEECTTCCCSCCC
T ss_pred             cCCcCCeec--cccCCCCCEEECcCCcccc-cC--ccccCCCCEEEeeCCcCCCcC---HHHCCCCCEEeccCCCCCEEE
Confidence            555555543  4445555555555555444 23  445555555555555544432   223333333333333332   


Q ss_pred             --------ccchhhhccCCcCEEeccCCCCccccc
Q 037308          261 --------RIPESIIQLFVLRYLLLSYSERIQSVS  287 (321)
Q Consensus       261 --------~l~~~l~~l~~L~~L~l~~n~~l~~~~  287 (321)
                              .+|  ...+++|++|++++|+.++.+|
T Consensus       271 l~~n~~~~~~~--~~~l~~L~~L~Ls~n~~l~~l~  303 (457)
T 3bz5_A          271 LTHNTQLIYFQ--AEGCRKIKELDVTHNTQLYLLD  303 (457)
T ss_dssp             CTTCTTCCEEE--CTTCTTCCCCCCTTCTTCCEEE
T ss_pred             CCCCccCCccc--ccccccCCEEECCCCcccceec
Confidence                    122  2345666666666665555554

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.93  E-value=5.5e-25  Score=210.47  Aligned_cols=259  Identities=12%  Similarity=0.051  Sum_probs=206.0

Q ss_pred             CCCceEEEEeecCCCCccccceeccCC-CCc-CcccEEEecCCCCCCCCC-cC-CcCceeEEeccCCcccccccC-CCCC
Q 037308           28 MPKLRFLKFYSSSFNGENKCKVSYLQD-PRF-AEVKYFHWHGYPLKSLPS-NL-SAEKLVFLKVPYSDIEQLWNG-EKHY  102 (321)
Q Consensus        28 l~~L~~L~l~~n~~~~~~~~~~~~~~~-l~~-~~L~~l~l~~~~l~~~~~-~~-~l~~L~~L~l~~~~l~~~~~~-~~~l  102 (321)
                      +++++.+++.+|.++       ..+.. +.. ++|++|++++|.+..++. .+ .+++|++|++++|.+..++.. +..+
T Consensus        50 l~~l~~l~l~~~~l~-------~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l  122 (597)
T 3oja_B           50 LNNQKIVTFKNSTMR-------KLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNV  122 (597)
T ss_dssp             GCCCSEEEESSCEES-------EECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTC
T ss_pred             CCCceEEEeeCCCCC-------CcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCC
Confidence            578999999988633       23332 343 899999999999988775 34 899999999999999988654 5889


Q ss_pred             CChHhHHhhccccccccCCCCCCCCCCCCccEEEccCCCCCcccCccccCcccCcEEecCCCCCcccccccccCCccEEE
Q 037308          103 SNLNQIINATCNKLIAKTPNPTLMPHLNKLVILNLRGSKSLKSLPSGIFNLEFLTKLDLSGCSKLKRLLEISSGNINWLF  182 (321)
Q Consensus       103 ~~L~~~l~l~~~~l~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~  182 (321)
                      ++|+. |++++|.++ .+|. ..|..+++|++|++++|.+.+..|..+..+++|++|++++|.... ++...+++|+.|+
T Consensus       123 ~~L~~-L~L~~n~l~-~l~~-~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~-~~~~~l~~L~~L~  198 (597)
T 3oja_B          123 PLLTV-LVLERNDLS-SLPR-GIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTH-VDLSLIPSLFHAN  198 (597)
T ss_dssp             TTCCE-EECCSSCCC-CCCT-TTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSB-CCGGGCTTCSEEE
T ss_pred             CCCCE-EEeeCCCCC-CCCH-HHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCC-cChhhhhhhhhhh
Confidence            99999 999999999 7664 246899999999999999777777779999999999999976443 3333355555555


Q ss_pred             ecccccc-------------------ccChhhhccCCCCeEecccCcccccccccccCCCCCCEEEecCCCCCCcccccc
Q 037308          183 LRETAIE-------------------ELPSSIERLLRLGHLDLSDCKRLKSLPSSLFKLKSLGVLNLGGCSNLQRLPECL  243 (321)
Q Consensus       183 l~~~~i~-------------------~l~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~  243 (321)
                      +++|.++                   .++..+  .++|+.|++++|.+.+  +..+..+++|+.|++++|.+.+..|..+
T Consensus       199 l~~n~l~~l~~~~~L~~L~ls~n~l~~~~~~~--~~~L~~L~L~~n~l~~--~~~l~~l~~L~~L~Ls~N~l~~~~~~~~  274 (597)
T 3oja_B          199 VSYNLLSTLAIPIAVEELDASHNSINVVRGPV--NVELTILKLQHNNLTD--TAWLLNYPGLVEVDLSYNELEKIMYHPF  274 (597)
T ss_dssp             CCSSCCSEEECCTTCSEEECCSSCCCEEECSC--CSCCCEEECCSSCCCC--CGGGGGCTTCSEEECCSSCCCEEESGGG
T ss_pred             cccCccccccCCchhheeeccCCccccccccc--CCCCCEEECCCCCCCC--ChhhccCCCCCEEECCCCccCCCCHHHh
Confidence            5555444                   433221  2578888888888765  3568899999999999999988888999


Q ss_pred             CCCCCCcEEEcccCCCcccchhhhccCCcCEEeccCCCCccccc----CccccccccccccCc
Q 037308          244 GQLSSPIILNLAKTNVERIPESIIQLFVLRYLLLSYSERIQSVS----LPLARGILEDTQRSP  302 (321)
Q Consensus       244 ~~~~~L~~L~l~~n~l~~l~~~l~~l~~L~~L~l~~n~~l~~~~----~~~~l~~l~~~~~~~  302 (321)
                      +.+++|+.|++++|.++.+|..+..+++|++|++++| .+..+|    ..++++.|++.++.-
T Consensus       275 ~~l~~L~~L~Ls~N~l~~l~~~~~~l~~L~~L~Ls~N-~l~~i~~~~~~l~~L~~L~L~~N~l  336 (597)
T 3oja_B          275 VKMQRLERLYISNNRLVALNLYGQPIPTLKVLDLSHN-HLLHVERNQPQFDRLENLYLDHNSI  336 (597)
T ss_dssp             TTCSSCCEEECTTSCCCEEECSSSCCTTCCEEECCSS-CCCCCGGGHHHHTTCSEEECCSSCC
T ss_pred             cCccCCCEEECCCCCCCCCCcccccCCCCcEEECCCC-CCCccCcccccCCCCCEEECCCCCC
Confidence            9999999999999999999887888999999999999 777877    346778887777543

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=99.93  E-value=2.2e-24  Score=199.00  Aligned_cols=222  Identities=23%  Similarity=0.256  Sum_probs=189.0

Q ss_pred             CcccEEEecCCCCCCCCCc-C-CcCceeEEeccCCcccccc-cCCCCCCChHhHHhhccccccccCCCCCCCCCCCCccE
Q 037308           58 AEVKYFHWHGYPLKSLPSN-L-SAEKLVFLKVPYSDIEQLW-NGEKHYSNLNQIINATCNKLIAKTPNPTLMPHLNKLVI  134 (321)
Q Consensus        58 ~~L~~l~l~~~~l~~~~~~-~-~l~~L~~L~l~~~~l~~~~-~~~~~l~~L~~~l~l~~~~l~~~~~~~~~~~~l~~L~~  134 (321)
                      ++++.|++++|.+..++.. + ++++|++|++++|.++.+. ..+..+++|+. |+++.|.++ .++. ..+..+++|++
T Consensus        64 ~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~-L~L~~n~l~-~~~~-~~~~~l~~L~~  140 (440)
T 3zyj_A           64 TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNT-LELFDNRLT-TIPN-GAFVYLSKLKE  140 (440)
T ss_dssp             TTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCE-EECCSSCCS-SCCT-TTSCSCSSCCE
T ss_pred             CCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCE-EECCCCcCC-eeCH-hHhhccccCce
Confidence            7889999999998877643 3 7999999999999998876 46778899999 999999998 6552 26888999999


Q ss_pred             EEccCCCCCcccCccccCcccCcEEecCCCCCccccccc---ccCCccEEEeccccccccChhhhccCCCCeEecccCcc
Q 037308          135 LNLRGSKSLKSLPSGIFNLEFLTKLDLSGCSKLKRLLEI---SSGNINWLFLRETAIEELPSSIERLLRLGHLDLSDCKR  211 (321)
Q Consensus       135 L~l~~n~~~~~~p~~l~~l~~L~~L~l~~~~~~~~~~~~---~~~~L~~L~l~~~~i~~l~~~~~~l~~L~~L~l~~n~~  211 (321)
                      |++++|.+....+..|..+++|+.|++++|..++.++..   .+++|++|++++|.++++|. +..+++|++|++++|.+
T Consensus       141 L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~-~~~l~~L~~L~Ls~N~l  219 (440)
T 3zyj_A          141 LWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLREIPN-LTPLIKLDELDLSGNHL  219 (440)
T ss_dssp             EECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCSSCCC-CTTCSSCCEEECTTSCC
T ss_pred             eeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCccccc-cCCCcccCEEECCCCcc
Confidence            999999865554557889999999999998777766653   47889999999999999884 77889999999999998


Q ss_pred             cccccccccCCCCCCEEEecCCCCCCccccccCCCCCCcEEEcccCCCcccch-hhhccCCcCEEeccCCCCc
Q 037308          212 LKSLPSSLFKLKSLGVLNLGGCSNLQRLPECLGQLSSPIILNLAKTNVERIPE-SIIQLFVLRYLLLSYSERI  283 (321)
Q Consensus       212 ~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~l~~-~l~~l~~L~~L~l~~n~~l  283 (321)
                      .+..+..+.++++|+.|++++|.+.+..+..+..+++|+.|++++|+++.++. .+..+++|++|++++|+.-
T Consensus       220 ~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~  292 (440)
T 3zyj_A          220 SAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHNPWN  292 (440)
T ss_dssp             CEECTTTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCCCCCCTTTTSSCTTCCEEECCSSCEE
T ss_pred             CccChhhhccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCCCCccChhHhccccCCCEEEcCCCCcc
Confidence            88888889999999999999999888888889999999999999999998874 5678899999999998653

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=99.93  E-value=1.3e-24  Score=201.11  Aligned_cols=221  Identities=23%  Similarity=0.234  Sum_probs=187.9

Q ss_pred             CcccEEEecCCCCCCCCCc-C-CcCceeEEeccCCcccccc-cCCCCCCChHhHHhhccccccccCCCCCCCCCCCCccE
Q 037308           58 AEVKYFHWHGYPLKSLPSN-L-SAEKLVFLKVPYSDIEQLW-NGEKHYSNLNQIINATCNKLIAKTPNPTLMPHLNKLVI  134 (321)
Q Consensus        58 ~~L~~l~l~~~~l~~~~~~-~-~l~~L~~L~l~~~~l~~~~-~~~~~l~~L~~~l~l~~~~l~~~~~~~~~~~~l~~L~~  134 (321)
                      +++++|++++|.+..++.. + .+++|++|++++|.++.+. ..+..+++|+. |+++.|.++ .++. ..+..+++|++
T Consensus        75 ~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~-L~L~~n~l~-~~~~-~~~~~l~~L~~  151 (452)
T 3zyi_A           75 SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNT-LELFDNWLT-VIPS-GAFEYLSKLRE  151 (452)
T ss_dssp             TTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCE-EECCSSCCS-BCCT-TTSSSCTTCCE
T ss_pred             CCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCE-EECCCCcCC-ccCh-hhhcccCCCCE
Confidence            7899999999998877543 4 7999999999999998876 56778899999 999999998 5553 25888999999


Q ss_pred             EEccCCCCCcccCccccCcccCcEEecCCCCCccccccc---ccCCccEEEeccccccccChhhhccCCCCeEecccCcc
Q 037308          135 LNLRGSKSLKSLPSGIFNLEFLTKLDLSGCSKLKRLLEI---SSGNINWLFLRETAIEELPSSIERLLRLGHLDLSDCKR  211 (321)
Q Consensus       135 L~l~~n~~~~~~p~~l~~l~~L~~L~l~~~~~~~~~~~~---~~~~L~~L~l~~~~i~~l~~~~~~l~~L~~L~l~~n~~  211 (321)
                      |++++|.+....+..|..+++|+.|++++|..++.++..   .+++|++|++++|.++++|. +..+++|++|++++|.+
T Consensus       152 L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~-~~~l~~L~~L~Ls~N~l  230 (452)
T 3zyi_A          152 LWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDMPN-LTPLVGLEELEMSGNHF  230 (452)
T ss_dssp             EECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSSCCC-CTTCTTCCEEECTTSCC
T ss_pred             EECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCccccccc-ccccccccEEECcCCcC
Confidence            999999865444556888999999999998777776653   47789999999999999874 77888999999999998


Q ss_pred             cccccccccCCCCCCEEEecCCCCCCccccccCCCCCCcEEEcccCCCcccch-hhhccCCcCEEeccCCCC
Q 037308          212 LKSLPSSLFKLKSLGVLNLGGCSNLQRLPECLGQLSSPIILNLAKTNVERIPE-SIIQLFVLRYLLLSYSER  282 (321)
Q Consensus       212 ~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~l~~-~l~~l~~L~~L~l~~n~~  282 (321)
                      .+..+..+.++++|+.|++++|.+.+..+..+..+++|+.|++++|+++.+|. .+..+++|++|++++|+.
T Consensus       231 ~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~  302 (452)
T 3zyi_A          231 PEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYLVELHLHHNPW  302 (452)
T ss_dssp             SEECGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTSSTTCTTCCEEECCSSCE
T ss_pred             cccCcccccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcCCccChHHhccccCCCEEEccCCCc
Confidence            88888889999999999999998888888889999999999999999998874 567889999999999854

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=99.92  E-value=3.3e-24  Score=205.80  Aligned_cols=282  Identities=22%  Similarity=0.215  Sum_probs=201.1

Q ss_pred             EeecCchhhhccChhhhcCCCCceEEEEeecCCCCccccceeccCCCCc-CcccEEEecCCCCCCCCCc-C-CcCceeEE
Q 037308            9 CLDMSTVKEIRLNLSTFTKMPKLRFLKFYSSSFNGENKCKVSYLQDPRF-AEVKYFHWHGYPLKSLPSN-L-SAEKLVFL   85 (321)
Q Consensus         9 ~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~l~~-~~L~~l~l~~~~l~~~~~~-~-~l~~L~~L   85 (321)
                      .||++++....+.+.+|+.+++|++|+|++|.++      ...+..+.. ++|++|++++|.+..+|.. + ++++|++|
T Consensus        56 ~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~------~i~~~~f~~L~~L~~L~Ls~N~l~~l~~~~f~~L~~L~~L  129 (635)
T 4g8a_A           56 NLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQ------TIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKL  129 (635)
T ss_dssp             EEECTTSCCCEECTTTTTTCTTCCEEECTTCCCC------EECTTTTTTCTTCCEEECTTCCCCEECGGGGTTCTTCCEE
T ss_pred             EEEeeCCCCCCCCHHHHhCCCCCCEEECCCCcCC------CcChhHhcCCCCCCEEEccCCcCCCCCHHHhcCCCCCCEE
Confidence            4667777777788888999999999999998754      223345666 8899999999988888764 3 78889999


Q ss_pred             eccCCccccccc-CCCCCCChHhHHhhccccccccCCCCCCCCCCCCccEEEccCCCCCcccCcccc-------------
Q 037308           86 KVPYSDIEQLWN-GEKHYSNLNQIINATCNKLIAKTPNPTLMPHLNKLVILNLRGSKSLKSLPSGIF-------------  151 (321)
Q Consensus        86 ~l~~~~l~~~~~-~~~~l~~L~~~l~l~~~~l~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~l~-------------  151 (321)
                      ++++|.++.++. .++.+++|+. ++++.|.+. .++.+..+..+++|++|++++|.+.+..+..+.             
T Consensus       130 ~Ls~N~l~~l~~~~~~~L~~L~~-L~Ls~N~l~-~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~L~~l~~~~~~~~  207 (635)
T 4g8a_A          130 VAVETNLASLENFPIGHLKTLKE-LNVAHNLIQ-SFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLD  207 (635)
T ss_dssp             ECTTSCCCCSTTCCCTTCTTCCE-EECCSSCCC-CCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCCEEE
T ss_pred             ECCCCcCCCCChhhhhcCcccCe-eccccCccc-cCCCchhhccchhhhhhcccCccccccccccccchhhhhhhhhhhh
Confidence            999988888765 4678888888 888888886 433222667778888888877754321111100             


Q ss_pred             --------------------------------------------------------------------------------
Q 037308          152 --------------------------------------------------------------------------------  151 (321)
Q Consensus       152 --------------------------------------------------------------------------------  151 (321)
                                                                                                      
T Consensus       208 ls~n~l~~i~~~~~~~~~~~~l~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~~~~l~~~~l~  287 (635)
T 4g8a_A          208 LSLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFR  287 (635)
T ss_dssp             CTTCCCCEECTTTTTTCEEEEEEEESCCSSHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCTTTTGGGGGSEEEEEE
T ss_pred             cccCcccccCcccccchhhhhhhhhcccccccccchhhcCCcccccccccccccccccccccccccccccccchhhhhhh
Confidence                                                                                            


Q ss_pred             --------------------------------------------------------------------------------
Q 037308          152 --------------------------------------------------------------------------------  151 (321)
Q Consensus       152 --------------------------------------------------------------------------------  151 (321)
                                                                                                      
T Consensus       288 ~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~  367 (635)
T 4g8a_A          288 LAYLDYYLDGIIDLFNCLTNVSSFSLVSVTIERVKDFSYNFGWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAFSE  367 (635)
T ss_dssp             EECCCSCEEECTTTTGGGTTCSEEEEESCEEEECGGGGSCCCCSEEEEESCEESSCCCCBCTTCCEEEEESCCSCCBCCC
T ss_pred             hhhhcccccchhhhhhhhcccccccccccccccccccccchhhhhhhcccccccCcCcccchhhhhcccccccCCCCccc
Confidence                                                                                            


Q ss_pred             -CcccCcEEecCCCCCccc--c-----------------------------------------------cc---cccCCc
Q 037308          152 -NLEFLTKLDLSGCSKLKR--L-----------------------------------------------LE---ISSGNI  178 (321)
Q Consensus       152 -~l~~L~~L~l~~~~~~~~--~-----------------------------------------------~~---~~~~~L  178 (321)
                       .+++|+.++++.|.....  .                                               +.   ..+.++
T Consensus       368 ~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~l~~l  447 (635)
T 4g8a_A          368 VDLPSLEFLDLSRNGLSFKGCCSQSDFGTISLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNL  447 (635)
T ss_dssp             CBCTTCCEEECCSSCCBEEEECCHHHHSCSCCCEEECCSCSEEEECSCCTTCTTCCEEECTTSEEESTTSSCTTTTCTTC
T ss_pred             ccccccccchhhccccccccccccchhhhhhhhhhhccccccccccccccccccccchhhhhcccccccccccccccccc
Confidence             112223333332211000  0                                               00   012234


Q ss_pred             cEEEeccccccccC-hhhhccCCCCeEecccCcccc-cccccccCCCCCCEEEecCCCCCCccccccCCCCCCcEEEccc
Q 037308          179 NWLFLRETAIEELP-SSIERLLRLGHLDLSDCKRLK-SLPSSLFKLKSLGVLNLGGCSNLQRLPECLGQLSSPIILNLAK  256 (321)
Q Consensus       179 ~~L~l~~~~i~~l~-~~~~~l~~L~~L~l~~n~~~~-~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~  256 (321)
                      +.++++.|.+..++ ..+..++.+++|++++|.... ..|..+..+++|+.|++++|.+.+..|..|.++++|+.|++++
T Consensus       448 ~~l~ls~n~l~~~~~~~~~~~~~L~~L~Ls~N~~~~~~~~~~~~~l~~L~~L~Ls~N~L~~l~~~~f~~l~~L~~L~Ls~  527 (635)
T 4g8a_A          448 IYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSH  527 (635)
T ss_dssp             CEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTT
T ss_pred             ccccccccccccccccccccchhhhhhhhhhcccccccCchhhhhccccCEEECCCCccCCcChHHHcCCCCCCEEECCC
Confidence            45555556665543 346677889999999887554 5667889999999999999999888889999999999999999


Q ss_pred             CCCcccc-hhhhccCCcCEEeccCCCCccccc------Cccccccccccc
Q 037308          257 TNVERIP-ESIIQLFVLRYLLLSYSERIQSVS------LPLARGILEDTQ  299 (321)
Q Consensus       257 n~l~~l~-~~l~~l~~L~~L~l~~n~~l~~~~------~~~~l~~l~~~~  299 (321)
                      |+++.++ ..+..+++|++|++++| .++.++      +|++++.|++.+
T Consensus       528 N~l~~l~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~l~~l~~~L~~L~L~~  576 (635)
T 4g8a_A          528 NNFFSLDTFPYKCLNSLQVLDYSLN-HIMTSKKQELQHFPSSLAFLNLTQ  576 (635)
T ss_dssp             SCCCBCCCGGGTTCTTCCEEECTTS-CCCBCCSSCTTCCCTTCCEEECTT
T ss_pred             CcCCCCChhHHhCCCCCCEEECCCC-cCCCCCHHHHHhhhCcCCEEEeeC
Confidence            9999876 56889999999999999 777665      457889998876

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}

Probab=99.92  E-value=3.7e-24  Score=198.09  Aligned_cols=251  Identities=16%  Similarity=0.092  Sum_probs=186.6

Q ss_pred             hhhcCCCCceEEEEeecCCCCccccceeccCCCCc-CcccEEEecCCCCCCCCCcCCcCceeEEeccCCcccccccCCCC
Q 037308           23 STFTKMPKLRFLKFYSSSFNGENKCKVSYLQDPRF-AEVKYFHWHGYPLKSLPSNLSAEKLVFLKVPYSDIEQLWNGEKH  101 (321)
Q Consensus        23 ~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~l~~-~~L~~l~l~~~~l~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~  101 (321)
                      ..++.+++|++|++++|.+++.        +.+.. ++|++|++++|.+..++ ...+++|++|++++|.++.++  +..
T Consensus        36 ~~~~~l~~L~~L~Ls~n~l~~~--------~~l~~l~~L~~L~Ls~n~l~~~~-~~~l~~L~~L~Ls~N~l~~~~--~~~  104 (457)
T 3bz5_A           36 ISEEQLATLTSLDCHNSSITDM--------TGIEKLTGLTKLICTSNNITTLD-LSQNTNLTYLACDSNKLTNLD--VTP  104 (457)
T ss_dssp             EEHHHHTTCCEEECCSSCCCCC--------TTGGGCTTCSEEECCSSCCSCCC-CTTCTTCSEEECCSSCCSCCC--CTT
T ss_pred             cChhHcCCCCEEEccCCCcccC--------hhhcccCCCCEEEccCCcCCeEc-cccCCCCCEEECcCCCCceee--cCC
Confidence            3566678888888888875532        23455 88888888888888775 347888888888888888763  677


Q ss_pred             CCChHhHHhhccccccccCCCCCCCCCCCCccEEEccCCCCCcccCccccCcccCcEEecCCCCCcccccccccCCccEE
Q 037308          102 YSNLNQIINATCNKLIAKTPNPTLMPHLNKLVILNLRGSKSLKSLPSGIFNLEFLTKLDLSGCSKLKRLLEISSGNINWL  181 (321)
Q Consensus       102 l~~L~~~l~l~~~~l~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L  181 (321)
                      +++|+. ++++.|.++ .+    .+..+++|++|++++|.+.+ ++  ++.+++|+.|+++.|..++.++...+++|+.|
T Consensus       105 l~~L~~-L~L~~N~l~-~l----~~~~l~~L~~L~l~~N~l~~-l~--l~~l~~L~~L~l~~n~~~~~~~~~~l~~L~~L  175 (457)
T 3bz5_A          105 LTKLTY-LNCDTNKLT-KL----DVSQNPLLTYLNCARNTLTE-ID--VSHNTQLTELDCHLNKKITKLDVTPQTQLTTL  175 (457)
T ss_dssp             CTTCCE-EECCSSCCS-CC----CCTTCTTCCEEECTTSCCSC-CC--CTTCTTCCEEECTTCSCCCCCCCTTCTTCCEE
T ss_pred             CCcCCE-EECCCCcCC-ee----cCCCCCcCCEEECCCCccce-ec--cccCCcCCEEECCCCCcccccccccCCcCCEE
Confidence            888888 888888887 44    36788888888888888554 33  77888888888888866666654467888888


Q ss_pred             EeccccccccChhhhccCCCCeEecccCcccccccccccCCCCCCEEEecCCCCCCccccccCCCCCCcEEEcccCCCcc
Q 037308          182 FLRETAIEELPSSIERLLRLGHLDLSDCKRLKSLPSSLFKLKSLGVLNLGGCSNLQRLPECLGQLSSPIILNLAKTNVER  261 (321)
Q Consensus       182 ~l~~~~i~~l~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~  261 (321)
                      ++++|.++++|  +..+++|++|++++|.+.+.   .++.+++|+.|++++|.+.+ +|  +..+++|+.|++++|+++.
T Consensus       176 ~ls~n~l~~l~--l~~l~~L~~L~l~~N~l~~~---~l~~l~~L~~L~Ls~N~l~~-ip--~~~l~~L~~L~l~~N~l~~  247 (457)
T 3bz5_A          176 DCSFNKITELD--VSQNKLLNRLNCDTNNITKL---DLNQNIQLTFLDCSSNKLTE-ID--VTPLTQLTYFDCSVNPLTE  247 (457)
T ss_dssp             ECCSSCCCCCC--CTTCTTCCEEECCSSCCSCC---CCTTCTTCSEEECCSSCCSC-CC--CTTCTTCSEEECCSSCCSC
T ss_pred             ECCCCccceec--cccCCCCCEEECcCCcCCee---ccccCCCCCEEECcCCcccc-cC--ccccCCCCEEEeeCCcCCC
Confidence            88888888887  67788888888888887664   37788888888888887766 55  7788888888888888886


Q ss_pred             cch-hhhccC-------CcCEEeccCCCCccccc--CccccccccccccC
Q 037308          262 IPE-SIIQLF-------VLRYLLLSYSERIQSVS--LPLARGILEDTQRS  301 (321)
Q Consensus       262 l~~-~l~~l~-------~L~~L~l~~n~~l~~~~--~~~~l~~l~~~~~~  301 (321)
                      +|. .+..+.       +|+.|++++|+.+..+|  ..++++.|++.++.
T Consensus       248 ~~~~~l~~L~~L~l~~n~L~~L~l~~n~~~~~~~~~~l~~L~~L~Ls~n~  297 (457)
T 3bz5_A          248 LDVSTLSKLTTLHCIQTDLLEIDLTHNTQLIYFQAEGCRKIKELDVTHNT  297 (457)
T ss_dssp             CCCTTCTTCCEEECTTCCCSCCCCTTCTTCCEEECTTCTTCCCCCCTTCT
T ss_pred             cCHHHCCCCCEEeccCCCCCEEECCCCccCCcccccccccCCEEECCCCc
Confidence            662 222222       44555666665555555  33677777777654

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=99.92  E-value=6.2e-25  Score=192.89  Aligned_cols=223  Identities=17%  Similarity=0.190  Sum_probs=140.8

Q ss_pred             CCceEEEEeecCCCCccccceecc-CCCCc-CcccEEEecCCCCCCCC---Cc-CCcCceeEEeccCCcccccccCCCCC
Q 037308           29 PKLRFLKFYSSSFNGENKCKVSYL-QDPRF-AEVKYFHWHGYPLKSLP---SN-LSAEKLVFLKVPYSDIEQLWNGEKHY  102 (321)
Q Consensus        29 ~~L~~L~l~~n~~~~~~~~~~~~~-~~l~~-~~L~~l~l~~~~l~~~~---~~-~~l~~L~~L~l~~~~l~~~~~~~~~l  102 (321)
                      ++|++|++++|.++       ..+ ..+.. ++|++|++++|.+..+.   .. ..+++|++|++++|.+..++..+..+
T Consensus        28 ~~l~~L~L~~n~l~-------~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~l~~~~~~l  100 (306)
T 2z66_A           28 SSATRLELESNKLQ-------SLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGL  100 (306)
T ss_dssp             TTCCEEECCSSCCC-------CCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCSCSEEEEEEEEETC
T ss_pred             CCCCEEECCCCccC-------ccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECCCCccccChhhcCCC
Confidence            46777777777643       122 22344 77777777777766442   22 26777777777777777766666677


Q ss_pred             CChHhHHhhccccccccCCCCCCCCCCCCccEEEccCCCCCcccCccccCcccCcEEecCCCCCcc-ccccc--ccCCcc
Q 037308          103 SNLNQIINATCNKLIAKTPNPTLMPHLNKLVILNLRGSKSLKSLPSGIFNLEFLTKLDLSGCSKLK-RLLEI--SSGNIN  179 (321)
Q Consensus       103 ~~L~~~l~l~~~~l~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~l~~l~~L~~L~l~~~~~~~-~~~~~--~~~~L~  179 (321)
                      ++|+. ++++.|.++ ..+....+..+++|++|++++|.+.+..+..+..+++|++|++++|...+ ..+..  .+++|+
T Consensus       101 ~~L~~-L~l~~n~l~-~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~  178 (306)
T 2z66_A          101 EQLEH-LDFQHSNLK-QMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLT  178 (306)
T ss_dssp             TTCCE-EECTTSEEE-SSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCC
T ss_pred             CCCCE-EECCCCccc-ccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCccccccchhHHhhCcCCC
Confidence            77777 777777776 44321256677777777777777555556666677777777777765433 22322  355666


Q ss_pred             EEEecccccccc-ChhhhccCCCCeEecccCcccccccccccCCCCCCEEEecCCCCCCccccccCCCC-CCcEEEcccC
Q 037308          180 WLFLRETAIEEL-PSSIERLLRLGHLDLSDCKRLKSLPSSLFKLKSLGVLNLGGCSNLQRLPECLGQLS-SPIILNLAKT  257 (321)
Q Consensus       180 ~L~l~~~~i~~l-~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~-~L~~L~l~~n  257 (321)
                      +|++++|.++++ |..+..+++|++|++++|.+.+..+..+..+++|+.|++++|.+.+..+..+..++ +|+.|++++|
T Consensus       179 ~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~L~L~~N  258 (306)
T 2z66_A          179 FLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQN  258 (306)
T ss_dssp             EEECTTSCCCEECTTTTTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSCCCBCSSSSCCCCCTTCCEEECTTC
T ss_pred             EEECCCCCcCCcCHHHhcCCCCCCEEECCCCccCccChhhccCcccCCEeECCCCCCcccCHHHHHhhhccCCEEEccCC
Confidence            666666666665 34456666666666666666555554566666666666666666666666666653 6666666666


Q ss_pred             CCc
Q 037308          258 NVE  260 (321)
Q Consensus       258 ~l~  260 (321)
                      .++
T Consensus       259 ~~~  261 (306)
T 2z66_A          259 DFA  261 (306)
T ss_dssp             CEE
T ss_pred             Cee
Confidence            665

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=99.92  E-value=6.4e-25  Score=192.82  Aligned_cols=221  Identities=20%  Similarity=0.224  Sum_probs=183.4

Q ss_pred             CcccEEEecCCCCCCCCCcC--CcCceeEEeccCCccccc---ccCCCCCCChHhHHhhccccccccCCCCCCCCCCCCc
Q 037308           58 AEVKYFHWHGYPLKSLPSNL--SAEKLVFLKVPYSDIEQL---WNGEKHYSNLNQIINATCNKLIAKTPNPTLMPHLNKL  132 (321)
Q Consensus        58 ~~L~~l~l~~~~l~~~~~~~--~l~~L~~L~l~~~~l~~~---~~~~~~l~~L~~~l~l~~~~l~~~~~~~~~~~~l~~L  132 (321)
                      ++|++|++++|.+..++...  .+++|++|++++|.++.+   +..+..+++|+. ++++.|.+. .++.  .+..+++|
T Consensus        28 ~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~-L~Ls~n~i~-~l~~--~~~~l~~L  103 (306)
T 2z66_A           28 SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKY-LDLSFNGVI-TMSS--NFLGLEQL  103 (306)
T ss_dssp             TTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCE-EECCSCSEE-EEEE--EEETCTTC
T ss_pred             CCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCE-EECCCCccc-cChh--hcCCCCCC
Confidence            78999999999999988763  899999999999998765   345567888999 999999998 7765  68889999


Q ss_pred             cEEEccCCCCCcccC-ccccCcccCcEEecCCCCCccccccc--ccCCccEEEeccccccc--cChhhhccCCCCeEecc
Q 037308          133 VILNLRGSKSLKSLP-SGIFNLEFLTKLDLSGCSKLKRLLEI--SSGNINWLFLRETAIEE--LPSSIERLLRLGHLDLS  207 (321)
Q Consensus       133 ~~L~l~~n~~~~~~p-~~l~~l~~L~~L~l~~~~~~~~~~~~--~~~~L~~L~l~~~~i~~--l~~~~~~l~~L~~L~l~  207 (321)
                      ++|++++|.+....+ ..+..+++|++|++++|......+..  .+++|++|++++|.+++  +|..+..+++|++|+++
T Consensus       104 ~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls  183 (306)
T 2z66_A          104 EHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLS  183 (306)
T ss_dssp             CEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECT
T ss_pred             CEEECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCccccccchhHHhhCcCCCEEECC
Confidence            999999998544433 46888999999999998655444433  47889999999999886  67778889999999999


Q ss_pred             cCcccccccccccCCCCCCEEEecCCCCCCccccccCCCCCCcEEEcccCCCcc-cchhhhccC-CcCEEeccCCCC
Q 037308          208 DCKRLKSLPSSLFKLKSLGVLNLGGCSNLQRLPECLGQLSSPIILNLAKTNVER-IPESIIQLF-VLRYLLLSYSER  282 (321)
Q Consensus       208 ~n~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~-l~~~l~~l~-~L~~L~l~~n~~  282 (321)
                      +|.+.+..+..+..+++|+.|++++|.+.+..+..+..+++|+.|++++|.++. .|..+..++ +|++|++++|+.
T Consensus       184 ~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~L~L~~N~~  260 (306)
T 2z66_A          184 QCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDF  260 (306)
T ss_dssp             TSCCCEECTTTTTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSCCCBCSSSSCCCCCTTCCEEECTTCCE
T ss_pred             CCCcCCcCHHHhcCCCCCCEEECCCCccCccChhhccCcccCCEeECCCCCCcccCHHHHHhhhccCCEEEccCCCe
Confidence            999888778888899999999999988877766678889999999999999984 445677774 899999999944

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=99.92  E-value=5e-25  Score=208.57  Aligned_cols=264  Identities=17%  Similarity=0.227  Sum_probs=195.2

Q ss_pred             CCceEEEEeecCCCCccccceeccCCCCc-CcccEEEecCCCCCCCCC-cC-CcCceeEEeccCCcccccccC-CCCCCC
Q 037308           29 PKLRFLKFYSSSFNGENKCKVSYLQDPRF-AEVKYFHWHGYPLKSLPS-NL-SAEKLVFLKVPYSDIEQLWNG-EKHYSN  104 (321)
Q Consensus        29 ~~L~~L~l~~n~~~~~~~~~~~~~~~l~~-~~L~~l~l~~~~l~~~~~-~~-~l~~L~~L~l~~~~l~~~~~~-~~~l~~  104 (321)
                      ++|++|++++|.++      ...+..+.. ++|++|++++|.+..++. .+ .+++|++|++++|+++.++.. +..+++
T Consensus        26 ~~L~~L~Ls~n~l~------~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~   99 (549)
T 2z81_A           26 AAMKSLDLSFNKIT------YIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSS   99 (549)
T ss_dssp             TTCCEEECCSSCCC------EECSSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCSCCHHHHTTCTT
T ss_pred             CCccEEECcCCccC------ccChhhhhcCCcccEEECCCCCcCccChhhccccccCCEEECCCCccCccCHHHhccCCC
Confidence            68999999999855      233455666 999999999999988764 34 899999999999999988764 789999


Q ss_pred             hHhHHhhccccccccCCCCCCCCCCCCccEEEccCCCCCcccC-ccccCcccCcEEecCCCCCccccccc----------
Q 037308          105 LNQIINATCNKLIAKTPNPTLMPHLNKLVILNLRGSKSLKSLP-SGIFNLEFLTKLDLSGCSKLKRLLEI----------  173 (321)
Q Consensus       105 L~~~l~l~~~~l~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p-~~l~~l~~L~~L~l~~~~~~~~~~~~----------  173 (321)
                      |+. ++++.|.++ .++.+..+..+++|++|++++|.+.+.+| ..+.++++|++|++++|...+..+..          
T Consensus       100 L~~-L~Ls~n~l~-~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L  177 (549)
T 2z81_A          100 LKY-LNLMGNPYQ-TLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHL  177 (549)
T ss_dssp             CCE-EECTTCCCS-SSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEE
T ss_pred             CcE-EECCCCccc-ccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCcccccChhhhhccccCceE
Confidence            999 999999998 43222278999999999999998666666 46899999999999987654433322          


Q ss_pred             ----------------ccCCccEEEeccccccccC---hh-----------------------------hhcc-------
Q 037308          174 ----------------SSGNINWLFLRETAIEELP---SS-----------------------------IERL-------  198 (321)
Q Consensus       174 ----------------~~~~L~~L~l~~~~i~~l~---~~-----------------------------~~~l-------  198 (321)
                                      .+++|++|++++|.+++++   ..                             +..+       
T Consensus       178 ~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~L~~l~  257 (549)
T 2z81_A          178 TLHLSESAFLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVE  257 (549)
T ss_dssp             EEECSBSTTHHHHHHHSTTTBSEEEEESCBCTTCCCCCCSSCCCCCCCCEEEEESCEEEHHHHHHHHGGGGGCTTCCEEE
T ss_pred             ecccCcccccchhhHhhcccccEEEccCCccccccccccchhhhhhcccceeccccccchhHHHHHHHHhhhhccccccc
Confidence                            1456666666666665431   00                             0011       


Q ss_pred             ----------------------------------------------------CCCCeEecccCcccccccccc-cCCCCC
Q 037308          199 ----------------------------------------------------LRLGHLDLSDCKRLKSLPSSL-FKLKSL  225 (321)
Q Consensus       199 ----------------------------------------------------~~L~~L~l~~n~~~~~~~~~~-~~l~~L  225 (321)
                                                                          ++|++|++++|.+. .+|..+ +.+++|
T Consensus       258 l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~l~~~~~~~~~L~~L~l~~n~l~-~ip~~~~~~l~~L  336 (549)
T 2z81_A          258 FDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVF-LVPCSFSQHLKSL  336 (549)
T ss_dssp             EESCEEECCSCCCCCTTTCCCCCTTCCEEEEESCBCSCGGGSCCCCHHHHHSTTCCEEEEESSCCC-CCCHHHHHHCTTC
T ss_pred             cccccccccccccccchhhhhhhcccccccccccccchhhhcccchhhhhhcccceEEEeccCccc-cCCHHHHhcCccc
Confidence                                                                22333333333322 233333 468899


Q ss_pred             CEEEecCCCCCCccc---cccCCCCCCcEEEcccCCCcccc---hhhhccCCcCEEeccCCCCccccc----Cccccccc
Q 037308          226 GVLNLGGCSNLQRLP---ECLGQLSSPIILNLAKTNVERIP---ESIIQLFVLRYLLLSYSERIQSVS----LPLARGIL  295 (321)
Q Consensus       226 ~~L~l~~~~~~~~~~---~~~~~~~~L~~L~l~~n~l~~l~---~~l~~l~~L~~L~l~~n~~l~~~~----~~~~l~~l  295 (321)
                      +.|++++|.+.+.+|   ..++.+++|+.|++++|+++.++   ..+..+++|++|++++| .++.+|    .+++++.|
T Consensus       337 ~~L~Ls~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~l~~L~~L~Ls~N-~l~~lp~~~~~~~~L~~L  415 (549)
T 2z81_A          337 EFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRN-TFHPMPDSCQWPEKMRFL  415 (549)
T ss_dssp             CEEECCSSCCCHHHHHHHTCTTSSTTCCEEECTTSCCCCHHHHHHHGGGCTTCCEEECTTC-CCCCCCSCCCCCTTCCEE
T ss_pred             cEEEccCCccccccccchhhhhccccCcEEEccCCcccccccchhhhhcCCCCCEEECCCC-CCccCChhhcccccccEE
Confidence            999999988877654   34678899999999999999776   35788999999999999 888887    45678888


Q ss_pred             cccccCc
Q 037308          296 EDTQRSP  302 (321)
Q Consensus       296 ~~~~~~~  302 (321)
                      ++.++.-
T Consensus       416 ~Ls~N~l  422 (549)
T 2z81_A          416 NLSSTGI  422 (549)
T ss_dssp             ECTTSCC
T ss_pred             ECCCCCc
Confidence            8877653

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=99.92  E-value=8.7e-24  Score=183.74  Aligned_cols=219  Identities=20%  Similarity=0.209  Sum_probs=132.9

Q ss_pred             cEEEecCCCCCCCCCcCCcCceeEEeccCCccccccc-CCCCCCChHhHHhhccccccccCCCCCCCCCCCCccEEEccC
Q 037308           61 KYFHWHGYPLKSLPSNLSAEKLVFLKVPYSDIEQLWN-GEKHYSNLNQIINATCNKLIAKTPNPTLMPHLNKLVILNLRG  139 (321)
Q Consensus        61 ~~l~l~~~~l~~~~~~~~l~~L~~L~l~~~~l~~~~~-~~~~l~~L~~~l~l~~~~l~~~~~~~~~~~~l~~L~~L~l~~  139 (321)
                      +.++.+++.+..+|..+ .++|++|++++|.++.++. .+..+++|+. ++++.|.+++..+.  .+..+++|++|++++
T Consensus        14 ~~~~c~~~~l~~ip~~~-~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~-L~l~~n~l~~~~~~--~~~~l~~L~~L~l~~   89 (285)
T 1ozn_A           14 VTTSCPQQGLQAVPVGI-PAASQRIFLHGNRISHVPAASFRACRNLTI-LWLHSNVLARIDAA--AFTGLALLEQLDLSD   89 (285)
T ss_dssp             CEEECCSSCCSSCCTTC-CTTCSEEECTTSCCCEECTTTTTTCTTCCE-EECCSSCCCEECTT--TTTTCTTCCEEECCS
T ss_pred             eEEEcCcCCcccCCcCC-CCCceEEEeeCCcCCccCHHHcccCCCCCE-EECCCCccceeCHh--hcCCccCCCEEeCCC
Confidence            44555555555555432 3456666666666655542 3455566666 66666666523233  566666666666666


Q ss_pred             CC-CCcccCccccCcccCcEEecCCCCCccccccc--ccCCccEEEeccccccccChh-hhccCCCCeEecccCcccccc
Q 037308          140 SK-SLKSLPSGIFNLEFLTKLDLSGCSKLKRLLEI--SSGNINWLFLRETAIEELPSS-IERLLRLGHLDLSDCKRLKSL  215 (321)
Q Consensus       140 n~-~~~~~p~~l~~l~~L~~L~l~~~~~~~~~~~~--~~~~L~~L~l~~~~i~~l~~~-~~~l~~L~~L~l~~n~~~~~~  215 (321)
                      |. +....|..+..+++|++|++++|...+..+..  .+++|++|++++|.+++++.. +..+++|++|++++|.+.+..
T Consensus        90 n~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~  169 (285)
T 1ozn_A           90 NAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVP  169 (285)
T ss_dssp             CTTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEEC
T ss_pred             CCCccccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCcccccC
Confidence            65 33333445666666666666665443332221  355666677766766666543 566677777777777666555


Q ss_pred             cccccCCCCCCEEEecCCCCCCccccccCCCCCCcEEEcccCCCcccch-hhhccCCcCEEeccCCCCc
Q 037308          216 PSSLFKLKSLGVLNLGGCSNLQRLPECLGQLSSPIILNLAKTNVERIPE-SIIQLFVLRYLLLSYSERI  283 (321)
Q Consensus       216 ~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~l~~-~l~~l~~L~~L~l~~n~~l  283 (321)
                      +..+..+++|+.|++++|.+.+..|..+..+++|+.|++++|.++.++. .+..+++|++|++++|+..
T Consensus       170 ~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~  238 (285)
T 1ozn_A          170 ERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWV  238 (285)
T ss_dssp             TTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEE
T ss_pred             HHHhcCccccCEEECCCCcccccCHhHccCcccccEeeCCCCcCCcCCHHHcccCcccCEEeccCCCcc
Confidence            5556677777777777776666666667777777777777777776653 4666777777777777443

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=99.92  E-value=1.4e-24  Score=194.47  Aligned_cols=250  Identities=17%  Similarity=0.184  Sum_probs=187.2

Q ss_pred             CCceEEEEeecCCCCccccceeccCCCCc-CcccEEEecCCCCCCCCCc-C-CcCceeEEeccCCcccccccC-CCCCCC
Q 037308           29 PKLRFLKFYSSSFNGENKCKVSYLQDPRF-AEVKYFHWHGYPLKSLPSN-L-SAEKLVFLKVPYSDIEQLWNG-EKHYSN  104 (321)
Q Consensus        29 ~~L~~L~l~~n~~~~~~~~~~~~~~~l~~-~~L~~l~l~~~~l~~~~~~-~-~l~~L~~L~l~~~~l~~~~~~-~~~l~~  104 (321)
                      ++|++|++++|.++      ......+.. ++|++|++++|.+..++.. + .+++|++|++++|+++.++.. +..+++
T Consensus        52 ~~L~~L~l~~n~i~------~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~  125 (353)
T 2z80_A           52 EAVKSLDLSNNRIT------YISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSS  125 (353)
T ss_dssp             TTCCEEECTTSCCC------EECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSSCCHHHHTTCTT
T ss_pred             ccCcEEECCCCcCc------ccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCCcCCcCCHhHhCCCcc
Confidence            47899999888754      222234555 8899999998888776543 4 788899999999988887665 677888


Q ss_pred             hHhHHhhccccccccCCCCCCCCCCCCccEEEccCCCCCccc-CccccCcccCcEEecCCCCCccccccc--ccCCccEE
Q 037308          105 LNQIINATCNKLIAKTPNPTLMPHLNKLVILNLRGSKSLKSL-PSGIFNLEFLTKLDLSGCSKLKRLLEI--SSGNINWL  181 (321)
Q Consensus       105 L~~~l~l~~~~l~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~-p~~l~~l~~L~~L~l~~~~~~~~~~~~--~~~~L~~L  181 (321)
                      |+. ++++.|.++ .++....+..+++|++|++++|...+.+ +..+..+++|++|++++|...+..+..  .+++|++|
T Consensus       126 L~~-L~L~~n~l~-~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L  203 (353)
T 2z80_A          126 LTF-LNLLGNPYK-TLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHL  203 (353)
T ss_dssp             CSE-EECTTCCCS-SSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEE
T ss_pred             CCE-EECCCCCCc-ccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCCcCccCHHHHhccccCCee
Confidence            888 888888888 6653236788889999999888534444 556888889999999887655443433  46788889


Q ss_pred             EeccccccccChh-hhccCCCCeEecccCcccccccccc---cCCCCCCEEEecCCCCCC----ccccccCCCCCCcEEE
Q 037308          182 FLRETAIEELPSS-IERLLRLGHLDLSDCKRLKSLPSSL---FKLKSLGVLNLGGCSNLQ----RLPECLGQLSSPIILN  253 (321)
Q Consensus       182 ~l~~~~i~~l~~~-~~~l~~L~~L~l~~n~~~~~~~~~~---~~l~~L~~L~l~~~~~~~----~~~~~~~~~~~L~~L~  253 (321)
                      ++++|.++.+|.. +..+++|++|++++|.+.+..+..+   .....++.++++++.+.+    .+|..+..+++|+.|+
T Consensus       204 ~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~~~~l~~l~L~~~~l~~~~l~~l~~~l~~l~~L~~L~  283 (353)
T 2z80_A          204 ILHMKQHILLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQVMKLLNQISGLLELE  283 (353)
T ss_dssp             EEECSCSTTHHHHHHHHTTTEEEEEEESCBCTTCCCC------CCCCCCEEEEESCBCCHHHHHHHHHHHHTCTTCCEEE
T ss_pred             cCCCCccccchhhhhhhcccccEEECCCCccccccccccccccccchhhccccccccccCcchhhhHHHHhcccCCCEEE
Confidence            9998888887754 4557889999999888776544332   345678888888877654    3667788899999999


Q ss_pred             cccCCCcccchh-hhccCCcCEEeccCCCCcccc
Q 037308          254 LAKTNVERIPES-IIQLFVLRYLLLSYSERIQSV  286 (321)
Q Consensus       254 l~~n~l~~l~~~-l~~l~~L~~L~l~~n~~l~~~  286 (321)
                      +++|+++.+|.. +..+++|++|++++|+.....
T Consensus       284 Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~~~~~~  317 (353)
T 2z80_A          284 FSRNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSC  317 (353)
T ss_dssp             CCSSCCCCCCTTTTTTCTTCCEEECCSSCBCCCH
T ss_pred             CCCCCCCccCHHHHhcCCCCCEEEeeCCCccCcC
Confidence            999999988876 478899999999999655543

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}

Probab=99.91  E-value=1.5e-25  Score=197.96  Aligned_cols=257  Identities=11%  Similarity=0.008  Sum_probs=203.5

Q ss_pred             ecCchhhhccChhhhcCCCCceEEEEeecCCCCccccceeccCCCCc-CcccEEEecCCCCCCCCCcCCcCceeEEeccC
Q 037308           11 DMSTVKEIRLNLSTFTKMPKLRFLKFYSSSFNGENKCKVSYLQDPRF-AEVKYFHWHGYPLKSLPSNLSAEKLVFLKVPY   89 (321)
Q Consensus        11 ~~~~~~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~l~~-~~L~~l~l~~~~l~~~~~~~~l~~L~~L~l~~   89 (321)
                      +++...........+..+++|++|++++|.+++..      +..+.. ++|++|++++|.+..++....+++|++|++++
T Consensus        16 ~ls~~~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~------~~~~~~l~~L~~L~Ls~n~l~~~~~~~~l~~L~~L~Ls~   89 (317)
T 3o53_A           16 KVTDSSLKQALASLRQSAWNVKELDLSGNPLSQIS------AADLAPFTKLELLNLSSNVLYETLDLESLSTLRTLDLNN   89 (317)
T ss_dssp             SCCTTTHHHHHHHHHTTGGGCSEEECTTSCCCCCC------HHHHTTCTTCCEEECTTSCCEEEEEETTCTTCCEEECCS
T ss_pred             eccccchhhhHHHHhccCCCCCEEECcCCccCcCC------HHHhhCCCcCCEEECCCCcCCcchhhhhcCCCCEEECcC
Confidence            33444333344455667789999999999865432      223445 89999999999987666545899999999999


Q ss_pred             CcccccccCCCCCCChHhHHhhccccccccCCCCCCCCCCCCccEEEccCCCCCcccCccccCcccCcEEecCCCCCccc
Q 037308           90 SDIEQLWNGEKHYSNLNQIINATCNKLIAKTPNPTLMPHLNKLVILNLRGSKSLKSLPSGIFNLEFLTKLDLSGCSKLKR  169 (321)
Q Consensus        90 ~~l~~~~~~~~~l~~L~~~l~l~~~~l~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~l~~l~~L~~L~l~~~~~~~~  169 (321)
                      |.++.++.    .++++. ++++.|.++ .++.    ..+++|++|++++|.+.+..+..+..+++|++|++++|...+.
T Consensus        90 n~l~~l~~----~~~L~~-L~l~~n~l~-~~~~----~~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~  159 (317)
T 3o53_A           90 NYVQELLV----GPSIET-LHAANNNIS-RVSC----SRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTV  159 (317)
T ss_dssp             SEEEEEEE----CTTCCE-EECCSSCCS-EEEE----CCCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEE
T ss_pred             CccccccC----CCCcCE-EECCCCccC-CcCc----cccCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcc
Confidence            99988753    378888 999999998 4432    3468899999999997766666788899999999999876554


Q ss_pred             cccc---ccCCccEEEeccccccccChhhhccCCCCeEecccCcccccccccccCCCCCCEEEecCCCCCCccccccCCC
Q 037308          170 LLEI---SSGNINWLFLRETAIEELPSSIERLLRLGHLDLSDCKRLKSLPSSLFKLKSLGVLNLGGCSNLQRLPECLGQL  246 (321)
Q Consensus       170 ~~~~---~~~~L~~L~l~~~~i~~l~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~  246 (321)
                      .+..   .+++|++|++++|.+++++.. ..+++|++|++++|.+.+. +..+..+++|+.|++++|.+. .+|..+..+
T Consensus       160 ~~~~~~~~l~~L~~L~L~~N~l~~~~~~-~~l~~L~~L~Ls~N~l~~l-~~~~~~l~~L~~L~L~~N~l~-~l~~~~~~l  236 (317)
T 3o53_A          160 NFAELAASSDTLEHLNLQYNFIYDVKGQ-VVFAKLKTLDLSSNKLAFM-GPEFQSAAGVTWISLRNNKLV-LIEKALRFS  236 (317)
T ss_dssp             EGGGGGGGTTTCCEEECTTSCCCEEECC-CCCTTCCEEECCSSCCCEE-CGGGGGGTTCSEEECTTSCCC-EECTTCCCC
T ss_pred             cHHHHhhccCcCCEEECCCCcCcccccc-cccccCCEEECCCCcCCcc-hhhhcccCcccEEECcCCccc-chhhHhhcC
Confidence            3332   368999999999999998643 3588999999999997764 445889999999999998766 577888999


Q ss_pred             CCCcEEEcccCCCc--ccchhhhccCCcCEEeccCCCCcccc
Q 037308          247 SSPIILNLAKTNVE--RIPESIIQLFVLRYLLLSYSERIQSV  286 (321)
Q Consensus       247 ~~L~~L~l~~n~l~--~l~~~l~~l~~L~~L~l~~n~~l~~~  286 (321)
                      ++|+.|++++|.++  .++.++..++.|+.+++.+|+.++..
T Consensus       237 ~~L~~L~l~~N~~~~~~~~~~~~~~~~L~~l~l~~~~~l~~~  278 (317)
T 3o53_A          237 QNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTGQ  278 (317)
T ss_dssp             TTCCEEECTTCCCBHHHHHHHHHTCHHHHHHHHHHHHHHHSS
T ss_pred             CCCCEEEccCCCccCcCHHHHHhccccceEEECCCchhccCC
Confidence            99999999999998  67788899999999999977666544

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=99.91  E-value=1.4e-23  Score=182.52  Aligned_cols=199  Identities=21%  Similarity=0.197  Sum_probs=165.5

Q ss_pred             CcccEEEecCCCCCCCCCc-C-CcCceeEEeccCCccccc-ccCCCCCCChHhHHhhcccc-ccccC-CCCCCCCCCCCc
Q 037308           58 AEVKYFHWHGYPLKSLPSN-L-SAEKLVFLKVPYSDIEQL-WNGEKHYSNLNQIINATCNK-LIAKT-PNPTLMPHLNKL  132 (321)
Q Consensus        58 ~~L~~l~l~~~~l~~~~~~-~-~l~~L~~L~l~~~~l~~~-~~~~~~l~~L~~~l~l~~~~-l~~~~-~~~~~~~~l~~L  132 (321)
                      ++|+.|++++|.+..++.. + .+++|++|++++|.++.+ +..+..+++|+. ++++.|. +. .+ +.  .+..+++|
T Consensus        32 ~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~-L~l~~n~~l~-~~~~~--~~~~l~~L  107 (285)
T 1ozn_A           32 AASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQ-LDLSDNAQLR-SVDPA--TFHGLGRL  107 (285)
T ss_dssp             TTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCE-EECCSCTTCC-CCCTT--TTTTCTTC
T ss_pred             CCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCE-EeCCCCCCcc-ccCHH--HhcCCcCC
Confidence            6888888888888777653 3 788888888888888877 456777888888 8888886 66 54 44  78889999


Q ss_pred             cEEEccCCCCCcccCccccCcccCcEEecCCCCCccccccc--ccCCccEEEeccccccccCh-hhhccCCCCeEecccC
Q 037308          133 VILNLRGSKSLKSLPSGIFNLEFLTKLDLSGCSKLKRLLEI--SSGNINWLFLRETAIEELPS-SIERLLRLGHLDLSDC  209 (321)
Q Consensus       133 ~~L~l~~n~~~~~~p~~l~~l~~L~~L~l~~~~~~~~~~~~--~~~~L~~L~l~~~~i~~l~~-~~~~l~~L~~L~l~~n  209 (321)
                      ++|++++|.+.+..|..+..+++|++|++++|......+..  .+++|++|++++|.+++++. .+..+++|++|++++|
T Consensus       108 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n  187 (285)
T 1ozn_A          108 HTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQN  187 (285)
T ss_dssp             CEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred             CEEECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCcccccCHHHhcCccccCEEECCCC
Confidence            99999999876666777888999999999997654333321  47889999999999999885 4888999999999999


Q ss_pred             cccccccccccCCCCCCEEEecCCCCCCccccccCCCCCCcEEEcccCCCc
Q 037308          210 KRLKSLPSSLFKLKSLGVLNLGGCSNLQRLPECLGQLSSPIILNLAKTNVE  260 (321)
Q Consensus       210 ~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~  260 (321)
                      .+.+..+..+..+++|+.|++++|.+.+..+..+..+++|+.|++++|.+.
T Consensus       188 ~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~  238 (285)
T 1ozn_A          188 RVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWV  238 (285)
T ss_dssp             CCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEE
T ss_pred             cccccCHhHccCcccccEeeCCCCcCCcCCHHHcccCcccCEEeccCCCcc
Confidence            988888889999999999999999988877778999999999999999988

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A

Probab=99.91  E-value=6.5e-24  Score=196.33  Aligned_cols=254  Identities=18%  Similarity=0.183  Sum_probs=146.1

Q ss_pred             cCchhhhccChhhhcCCCCceEEEEeecCCCCccccceeccCCCCc-C-------------cccEEEecCCCCCCCCCcC
Q 037308           12 MSTVKEIRLNLSTFTKMPKLRFLKFYSSSFNGENKCKVSYLQDPRF-A-------------EVKYFHWHGYPLKSLPSNL   77 (321)
Q Consensus        12 ~~~~~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~l~~-~-------------~L~~l~l~~~~l~~~~~~~   77 (321)
                      ++++....+ +..++.+++|++|++++|.++|..+      ..+.. .             +++.+++++|.+..+|.. 
T Consensus        18 l~~n~l~~i-P~~i~~L~~L~~L~l~~n~~~~~~p------~~~~~l~~L~~l~l~~c~~~~l~~L~l~~~~l~~lp~~-   89 (454)
T 1jl5_A           18 RHSSNLTEM-PVEAENVKSKTEYYNAWSEWERNAP------PGNGEQREMAVSRLRDCLDRQAHELELNNLGLSSLPEL-   89 (454)
T ss_dssp             -----------------CCHHHHHHHHHHHHHTSC------TTSCCCHHHHHHHHHHHHHHTCSEEECTTSCCSCCCSC-
T ss_pred             cccCchhhC-ChhHhcccchhhhhccCCcccccCC------cccccchhcchhhhhhhhccCCCEEEecCCccccCCCC-
Confidence            344433333 4568889999999999887654433      22332 2             357788888877777663 


Q ss_pred             CcCceeEEeccCCcccccccCCCCCCChHhHHhhccccccccCCCCCCCCCCCCccEEEccCCCCCcccCccccCcccCc
Q 037308           78 SAEKLVFLKVPYSDIEQLWNGEKHYSNLNQIINATCNKLIAKTPNPTLMPHLNKLVILNLRGSKSLKSLPSGIFNLEFLT  157 (321)
Q Consensus        78 ~l~~L~~L~l~~~~l~~~~~~~~~l~~L~~~l~l~~~~l~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~l~~l~~L~  157 (321)
                       .++|++|++++|.++.++..   .++++. ++++.|.++ .++.  .   .++|++|++++|.+. .+|. ++.+++|+
T Consensus        90 -~~~L~~L~l~~n~l~~lp~~---~~~L~~-L~l~~n~l~-~l~~--~---~~~L~~L~L~~n~l~-~lp~-~~~l~~L~  156 (454)
T 1jl5_A           90 -PPHLESLVASCNSLTELPEL---PQSLKS-LLVDNNNLK-ALSD--L---PPLLEYLGVSNNQLE-KLPE-LQNSSFLK  156 (454)
T ss_dssp             -CTTCSEEECCSSCCSSCCCC---CTTCCE-EECCSSCCS-CCCS--C---CTTCCEEECCSSCCS-SCCC-CTTCTTCC
T ss_pred             -cCCCCEEEccCCcCCccccc---cCCCcE-EECCCCccC-cccC--C---CCCCCEEECcCCCCC-CCcc-cCCCCCCC
Confidence             56788888888877776543   356666 777777776 4442  1   257777777777644 3663 77777777


Q ss_pred             EEecCCCCCcccccccccCCccEEEeccccccccChhhhccCCCCeEecccCcccccccccccCCCCCCEEEecCCCCCC
Q 037308          158 KLDLSGCSKLKRLLEISSGNINWLFLRETAIEELPSSIERLLRLGHLDLSDCKRLKSLPSSLFKLKSLGVLNLGGCSNLQ  237 (321)
Q Consensus       158 ~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~i~~l~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~~~~~~  237 (321)
                      +|++++|. ++.+|.. ..+|++|++++|.++++| .+..+++|++|++++|.+.+ +|..   .++|+.|++++|.+. 
T Consensus       157 ~L~l~~N~-l~~lp~~-~~~L~~L~L~~n~l~~l~-~~~~l~~L~~L~l~~N~l~~-l~~~---~~~L~~L~l~~n~l~-  228 (454)
T 1jl5_A          157 IIDVDNNS-LKKLPDL-PPSLEFIAAGNNQLEELP-ELQNLPFLTAIYADNNSLKK-LPDL---PLSLESIVAGNNILE-  228 (454)
T ss_dssp             EEECCSSC-CSCCCCC-CTTCCEEECCSSCCSSCC-CCTTCTTCCEEECCSSCCSS-CCCC---CTTCCEEECCSSCCS-
T ss_pred             EEECCCCc-CcccCCC-cccccEEECcCCcCCcCc-cccCCCCCCEEECCCCcCCc-CCCC---cCcccEEECcCCcCC-
Confidence            77777764 3345544 557777777777777766 46667777777777766554 2321   235666666665544 


Q ss_pred             ccccccCCCCCCcEEEcccCCCcccchhhhccCCcCEEeccCCCCccccc-Cccccccccccc
Q 037308          238 RLPECLGQLSSPIILNLAKTNVERIPESIIQLFVLRYLLLSYSERIQSVS-LPLARGILEDTQ  299 (321)
Q Consensus       238 ~~~~~~~~~~~L~~L~l~~n~l~~l~~~l~~l~~L~~L~l~~n~~l~~~~-~~~~l~~l~~~~  299 (321)
                      .+| .++.+++|+.|++++|+++.+|..   .++|++|++++| .++.+| .+++++.|++.+
T Consensus       229 ~lp-~~~~l~~L~~L~l~~N~l~~l~~~---~~~L~~L~l~~N-~l~~l~~~~~~L~~L~ls~  286 (454)
T 1jl5_A          229 ELP-ELQNLPFLTTIYADNNLLKTLPDL---PPSLEALNVRDN-YLTDLPELPQSLTFLDVSE  286 (454)
T ss_dssp             SCC-CCTTCTTCCEEECCSSCCSSCCSC---CTTCCEEECCSS-CCSCCCCCCTTCCEEECCS
T ss_pred             ccc-ccCCCCCCCEEECCCCcCCccccc---ccccCEEECCCC-cccccCcccCcCCEEECcC
Confidence            444 355666666666666666655532   244555555555 444444 334444444443

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A

Probab=99.90  E-value=1.7e-22  Score=186.87  Aligned_cols=205  Identities=25%  Similarity=0.286  Sum_probs=109.1

Q ss_pred             CcccEEEecCCCCCCCCCcCCcCceeEEeccCCcccccccCCCCCCChHhHHhhccccccccCCCCCCCCCCCCccEEEc
Q 037308           58 AEVKYFHWHGYPLKSLPSNLSAEKLVFLKVPYSDIEQLWNGEKHYSNLNQIINATCNKLIAKTPNPTLMPHLNKLVILNL  137 (321)
Q Consensus        58 ~~L~~l~l~~~~l~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~l~~L~~~l~l~~~~l~~~~~~~~~~~~l~~L~~L~l  137 (321)
                      ++|++|++++|.+..+|..  .++|++|++++|+++.++ .+..+++|+. ++++.|.++ .+|.  .   ..+|++|++
T Consensus       153 ~~L~~L~l~~N~l~~lp~~--~~~L~~L~L~~n~l~~l~-~~~~l~~L~~-L~l~~N~l~-~l~~--~---~~~L~~L~l  222 (454)
T 1jl5_A          153 SFLKIIDVDNNSLKKLPDL--PPSLEFIAAGNNQLEELP-ELQNLPFLTA-IYADNNSLK-KLPD--L---PLSLESIVA  222 (454)
T ss_dssp             TTCCEEECCSSCCSCCCCC--CTTCCEEECCSSCCSSCC-CCTTCTTCCE-EECCSSCCS-SCCC--C---CTTCCEEEC
T ss_pred             CCCCEEECCCCcCcccCCC--cccccEEECcCCcCCcCc-cccCCCCCCE-EECCCCcCC-cCCC--C---cCcccEEEC
Confidence            5566666666655555543  245666666666665544 4555666666 666666665 3432  1   135666666


Q ss_pred             cCCCCCcccCccccCcccCcEEecCCCCCcccccccccCCccEEEeccccccccChhhhccCCCCeEecccCcccc--cc
Q 037308          138 RGSKSLKSLPSGIFNLEFLTKLDLSGCSKLKRLLEISSGNINWLFLRETAIEELPSSIERLLRLGHLDLSDCKRLK--SL  215 (321)
Q Consensus       138 ~~n~~~~~~p~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~i~~l~~~~~~l~~L~~L~l~~n~~~~--~~  215 (321)
                      ++|.+. .+|. +..+++|++|++++|.. ..+|.. +++|+.|++++|.++++|..   .++|++|++++|.+.+  ..
T Consensus       223 ~~n~l~-~lp~-~~~l~~L~~L~l~~N~l-~~l~~~-~~~L~~L~l~~N~l~~l~~~---~~~L~~L~ls~N~l~~l~~~  295 (454)
T 1jl5_A          223 GNNILE-ELPE-LQNLPFLTTIYADNNLL-KTLPDL-PPSLEALNVRDNYLTDLPEL---PQSLTFLDVSENIFSGLSEL  295 (454)
T ss_dssp             CSSCCS-SCCC-CTTCTTCCEEECCSSCC-SSCCSC-CTTCCEEECCSSCCSCCCCC---CTTCCEEECCSSCCSEESCC
T ss_pred             cCCcCC-cccc-cCCCCCCCEEECCCCcC-Cccccc-ccccCEEECCCCcccccCcc---cCcCCEEECcCCccCcccCc
Confidence            666533 5553 66667777777766543 334433 45566666666665555432   2345555555554443  11


Q ss_pred             cccc-------------cCC-CCCCEEEecCCCCCCccccccCCCCCCcEEEcccCCCcccchhhhccCCcCEEeccCCC
Q 037308          216 PSSL-------------FKL-KSLGVLNLGGCSNLQRLPECLGQLSSPIILNLAKTNVERIPESIIQLFVLRYLLLSYSE  281 (321)
Q Consensus       216 ~~~~-------------~~l-~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~l~~~l~~l~~L~~L~l~~n~  281 (321)
                      |..+             ..+ ++|+.|++++|.+.+ +|..   +++|+.|++++|+++.+|.   .+++|++|++++| 
T Consensus       296 ~~~L~~L~l~~N~l~~i~~~~~~L~~L~Ls~N~l~~-lp~~---~~~L~~L~L~~N~l~~lp~---~l~~L~~L~L~~N-  367 (454)
T 1jl5_A          296 PPNLYYLNASSNEIRSLCDLPPSLEELNVSNNKLIE-LPAL---PPRLERLIASFNHLAEVPE---LPQNLKQLHVEYN-  367 (454)
T ss_dssp             CTTCCEEECCSSCCSEECCCCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCSCCCC---CCTTCCEEECCSS-
T ss_pred             CCcCCEEECcCCcCCcccCCcCcCCEEECCCCcccc-cccc---CCcCCEEECCCCccccccc---hhhhccEEECCCC-
Confidence            1111             111 356666666655443 3332   3566666666666666554   3456666666666 


Q ss_pred             Cccccc
Q 037308          282 RIQSVS  287 (321)
Q Consensus       282 ~l~~~~  287 (321)
                      .++.+|
T Consensus       368 ~l~~l~  373 (454)
T 1jl5_A          368 PLREFP  373 (454)
T ss_dssp             CCSSCC
T ss_pred             CCCcCC
Confidence            444433

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=99.90  E-value=8.2e-23  Score=189.04  Aligned_cols=222  Identities=16%  Similarity=0.145  Sum_probs=190.0

Q ss_pred             CCceEEEEeecCCCCccccceeccCCCCc-CcccEEEecCCCCCCCCCc-C-CcCceeEEeccCCcccccccC-CCCCCC
Q 037308           29 PKLRFLKFYSSSFNGENKCKVSYLQDPRF-AEVKYFHWHGYPLKSLPSN-L-SAEKLVFLKVPYSDIEQLWNG-EKHYSN  104 (321)
Q Consensus        29 ~~L~~L~l~~n~~~~~~~~~~~~~~~l~~-~~L~~l~l~~~~l~~~~~~-~-~l~~L~~L~l~~~~l~~~~~~-~~~l~~  104 (321)
                      +++++|++++|.++      ...+..+.. ++|++|++++|.+..++.. + ++++|++|++++|.++.++.. +..+++
T Consensus        75 ~~l~~L~L~~n~i~------~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~  148 (452)
T 3zyi_A           75 SNTRYLNLMENNIQ------MIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSK  148 (452)
T ss_dssp             TTCSEEECCSSCCC------EECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSBCCTTTSSSCTT
T ss_pred             CCccEEECcCCcCc------eECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCCcCCccChhhhcccCC
Confidence            58999999999854      333455666 9999999999999887643 4 799999999999999988765 678999


Q ss_pred             hHhHHhhccccccccCCCCCCCCCCCCccEEEccCCCCCcccCc-cccCcccCcEEecCCCCCccccccc-ccCCccEEE
Q 037308          105 LNQIINATCNKLIAKTPNPTLMPHLNKLVILNLRGSKSLKSLPS-GIFNLEFLTKLDLSGCSKLKRLLEI-SSGNINWLF  182 (321)
Q Consensus       105 L~~~l~l~~~~l~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~-~l~~l~~L~~L~l~~~~~~~~~~~~-~~~~L~~L~  182 (321)
                      |+. |+++.|.++ .++. ..+..+++|++|++++|...+.++. .+..+++|+.|++++|.. ..++.. .+++|+.|+
T Consensus       149 L~~-L~L~~N~l~-~~~~-~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l-~~~~~~~~l~~L~~L~  224 (452)
T 3zyi_A          149 LRE-LWLRNNPIE-SIPS-YAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNI-KDMPNLTPLVGLEELE  224 (452)
T ss_dssp             CCE-EECCSCCCC-EECT-TTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCC-SSCCCCTTCTTCCEEE
T ss_pred             CCE-EECCCCCcc-eeCH-hHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCcc-cccccccccccccEEE
Confidence            999 999999998 6552 2689999999999999766776664 588999999999999764 444544 578999999


Q ss_pred             eccccccccC-hhhhccCCCCeEecccCcccccccccccCCCCCCEEEecCCCCCCccccccCCCCCCcEEEcccCCCc
Q 037308          183 LRETAIEELP-SSIERLLRLGHLDLSDCKRLKSLPSSLFKLKSLGVLNLGGCSNLQRLPECLGQLSSPIILNLAKTNVE  260 (321)
Q Consensus       183 l~~~~i~~l~-~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~  260 (321)
                      +++|.+++++ ..+..+++|++|++++|.+.+..+..+..+++|+.|++++|.+.+..+..+..+++|+.|++++|.+.
T Consensus       225 Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~  303 (452)
T 3zyi_A          225 MSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYLVELHLHHNPWN  303 (452)
T ss_dssp             CTTSCCSEECGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTSSTTCTTCCEEECCSSCEE
T ss_pred             CcCCcCcccCcccccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcCCccChHHhccccCCCEEEccCCCcC
Confidence            9999999974 56899999999999999998888888999999999999999988777778899999999999999876

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=99.90  E-value=8.6e-23  Score=188.28  Aligned_cols=222  Identities=15%  Similarity=0.171  Sum_probs=190.3

Q ss_pred             CCceEEEEeecCCCCccccceeccCCCCc-CcccEEEecCCCCCCCCCc-C-CcCceeEEeccCCccccccc-CCCCCCC
Q 037308           29 PKLRFLKFYSSSFNGENKCKVSYLQDPRF-AEVKYFHWHGYPLKSLPSN-L-SAEKLVFLKVPYSDIEQLWN-GEKHYSN  104 (321)
Q Consensus        29 ~~L~~L~l~~n~~~~~~~~~~~~~~~l~~-~~L~~l~l~~~~l~~~~~~-~-~l~~L~~L~l~~~~l~~~~~-~~~~l~~  104 (321)
                      +++++|++++|.++      ...+..+.. ++|++|++++|.+..++.. + ++++|++|++++|+++.++. .+..+++
T Consensus        64 ~~l~~L~L~~n~i~------~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~  137 (440)
T 3zyj_A           64 TNTRLLNLHENQIQ------IIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSK  137 (440)
T ss_dssp             TTCSEEECCSCCCC------EECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSSCCSSCCTTTSCSCSS
T ss_pred             CCCcEEEccCCcCC------eeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCCcCCeeCHhHhhcccc
Confidence            58999999999854      333455666 9999999999999887754 4 79999999999999998876 5788999


Q ss_pred             hHhHHhhccccccccCCCCCCCCCCCCccEEEccCCCCCcccCc-cccCcccCcEEecCCCCCccccccc-ccCCccEEE
Q 037308          105 LNQIINATCNKLIAKTPNPTLMPHLNKLVILNLRGSKSLKSLPS-GIFNLEFLTKLDLSGCSKLKRLLEI-SSGNINWLF  182 (321)
Q Consensus       105 L~~~l~l~~~~l~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~-~l~~l~~L~~L~l~~~~~~~~~~~~-~~~~L~~L~  182 (321)
                      |+. ++++.|.+. .++. ..+..+++|++|++++|...+.++. .|..+++|+.|++++|. ++.+|.. .+++|+.|+
T Consensus       138 L~~-L~L~~N~i~-~~~~-~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~l~~L~~L~  213 (440)
T 3zyj_A          138 LKE-LWLRNNPIE-SIPS-YAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCN-LREIPNLTPLIKLDELD  213 (440)
T ss_dssp             CCE-EECCSCCCC-EECT-TTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSC-CSSCCCCTTCSSCCEEE
T ss_pred             Cce-eeCCCCccc-ccCH-HHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCc-CccccccCCCcccCEEE
Confidence            999 999999998 5552 2789999999999999766666654 68899999999999975 4455544 578999999


Q ss_pred             ecccccccc-ChhhhccCCCCeEecccCcccccccccccCCCCCCEEEecCCCCCCccccccCCCCCCcEEEcccCCCc
Q 037308          183 LRETAIEEL-PSSIERLLRLGHLDLSDCKRLKSLPSSLFKLKSLGVLNLGGCSNLQRLPECLGQLSSPIILNLAKTNVE  260 (321)
Q Consensus       183 l~~~~i~~l-~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~  260 (321)
                      +++|.++++ |..+..+++|++|++++|.+.+..+..+..+++|+.|++++|++.+..+..+..+++|+.|++++|.+.
T Consensus       214 Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~  292 (440)
T 3zyj_A          214 LSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHNPWN  292 (440)
T ss_dssp             CTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCCCCCCTTTTSSCTTCCEEECCSSCEE
T ss_pred             CCCCccCccChhhhccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCCCCccChhHhccccCCCEEEcCCCCcc
Confidence            999999997 467899999999999999999888888999999999999999988877778899999999999999976

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=99.89  E-value=4.5e-23  Score=184.71  Aligned_cols=241  Identities=18%  Similarity=0.147  Sum_probs=195.6

Q ss_pred             eecCchhhhccChhhhcCCCCceEEEEeecCCCCccccceeccCCCCc-CcccEEEecCCCCCCCCCc-C-CcCceeEEe
Q 037308           10 LDMSTVKEIRLNLSTFTKMPKLRFLKFYSSSFNGENKCKVSYLQDPRF-AEVKYFHWHGYPLKSLPSN-L-SAEKLVFLK   86 (321)
Q Consensus        10 l~~~~~~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~l~~-~~L~~l~l~~~~l~~~~~~-~-~l~~L~~L~   86 (321)
                      |+++++.........+..+++|++|++++|.++      ...+..+.. ++|++|++++|.+..++.. + .+++|++|+
T Consensus        57 L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~------~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~  130 (353)
T 2z80_A           57 LDLSNNRITYISNSDLQRCVNLQALVLTSNGIN------TIEEDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLN  130 (353)
T ss_dssp             EECTTSCCCEECTTTTTTCTTCCEEECTTSCCC------EECTTTTTTCTTCCEEECCSSCCSSCCHHHHTTCTTCSEEE
T ss_pred             EECCCCcCcccCHHHhccCCCCCEEECCCCccC------ccCHhhcCCCCCCCEEECCCCcCCcCCHhHhCCCccCCEEE
Confidence            455566555666678999999999999999854      233345666 9999999999999998876 3 799999999


Q ss_pred             ccCCccccccc--CCCCCCChHhHHhhccc-cccccCCCCCCCCCCCCccEEEccCCCCCcccCccccCcccCcEEecCC
Q 037308           87 VPYSDIEQLWN--GEKHYSNLNQIINATCN-KLIAKTPNPTLMPHLNKLVILNLRGSKSLKSLPSGIFNLEFLTKLDLSG  163 (321)
Q Consensus        87 l~~~~l~~~~~--~~~~l~~L~~~l~l~~~-~l~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~l~~l~~L~~L~l~~  163 (321)
                      +++|+++.++.  .+..+++|+. ++++.| .+. .++ +..+..+++|++|++++|.+.+..|..+..+++|++|++++
T Consensus       131 L~~n~l~~l~~~~~~~~l~~L~~-L~l~~n~~~~-~~~-~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~  207 (353)
T 2z80_A          131 LLGNPYKTLGETSLFSHLTKLQI-LRVGNMDTFT-KIQ-RKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHM  207 (353)
T ss_dssp             CTTCCCSSSCSSCSCTTCTTCCE-EEEEESSSCC-EEC-TTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEEC
T ss_pred             CCCCCCcccCchhhhccCCCCcE-EECCCCcccc-ccC-HHHccCCCCCCEEECCCCCcCccCHHHHhccccCCeecCCC
Confidence            99999998876  6788999999 999887 566 443 12789999999999999997777788899999999999999


Q ss_pred             CCCccccccc---ccCCccEEEeccccccccChh----hhccCCCCeEecccCcccc----cccccccCCCCCCEEEecC
Q 037308          164 CSKLKRLLEI---SSGNINWLFLRETAIEELPSS----IERLLRLGHLDLSDCKRLK----SLPSSLFKLKSLGVLNLGG  232 (321)
Q Consensus       164 ~~~~~~~~~~---~~~~L~~L~l~~~~i~~l~~~----~~~l~~L~~L~l~~n~~~~----~~~~~~~~l~~L~~L~l~~  232 (321)
                      |.. +.++..   .+++|+.|++++|.+++++..    ......++.+++..+.+.+    .+|..+..+++|+.|++++
T Consensus       208 n~l-~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~~~~l~~l~L~~~~l~~~~l~~l~~~l~~l~~L~~L~Ls~  286 (353)
T 2z80_A          208 KQH-ILLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQVMKLLNQISGLLELEFSR  286 (353)
T ss_dssp             SCS-TTHHHHHHHHTTTEEEEEEESCBCTTCCCC------CCCCCCEEEEESCBCCHHHHHHHHHHHHTCTTCCEEECCS
T ss_pred             Ccc-ccchhhhhhhcccccEEECCCCccccccccccccccccchhhccccccccccCcchhhhHHHHhcccCCCEEECCC
Confidence            764 444433   378999999999999986521    2345678889999888765    4677788999999999999


Q ss_pred             CCCCCccccc-cCCCCCCcEEEcccCCCcc
Q 037308          233 CSNLQRLPEC-LGQLSSPIILNLAKTNVER  261 (321)
Q Consensus       233 ~~~~~~~~~~-~~~~~~L~~L~l~~n~l~~  261 (321)
                      |.+. .+|.. +..+++|+.|++++|.++.
T Consensus       287 N~l~-~i~~~~~~~l~~L~~L~L~~N~~~~  315 (353)
T 2z80_A          287 NQLK-SVPDGIFDRLTSLQKIWLHTNPWDC  315 (353)
T ss_dssp             SCCC-CCCTTTTTTCTTCCEEECCSSCBCC
T ss_pred             CCCC-ccCHHHHhcCCCCCEEEeeCCCccC
Confidence            9877 55555 5899999999999999983

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}

Probab=99.89  E-value=7.7e-22  Score=188.35  Aligned_cols=219  Identities=22%  Similarity=0.198  Sum_probs=148.3

Q ss_pred             CCceEEEEeecCCCCccccceeccCCCCcCcccEEEecCCCCCCCCCcCCcCceeEEeccCCcccccccCCCCCCChHhH
Q 037308           29 PKLRFLKFYSSSFNGENKCKVSYLQDPRFAEVKYFHWHGYPLKSLPSNLSAEKLVFLKVPYSDIEQLWNGEKHYSNLNQI  108 (321)
Q Consensus        29 ~~L~~L~l~~n~~~~~~~~~~~~~~~l~~~~L~~l~l~~~~l~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~l~~L~~~  108 (321)
                      ++|++|++++|.++.       .+.  ..++|++|++++|.+..+|.  .+++|++|++++|.++.++.   .+++|+. 
T Consensus        61 ~~L~~L~L~~N~l~~-------lp~--~l~~L~~L~Ls~N~l~~lp~--~l~~L~~L~Ls~N~l~~l~~---~l~~L~~-  125 (622)
T 3g06_A           61 AHITTLVIPDNNLTS-------LPA--LPPELRTLEVSGNQLTSLPV--LPPGLLELSIFSNPLTHLPA---LPSGLCK-  125 (622)
T ss_dssp             TTCSEEEECSCCCSC-------CCC--CCTTCCEEEECSCCCSCCCC--CCTTCCEEEECSCCCCCCCC---CCTTCCE-
T ss_pred             CCCcEEEecCCCCCC-------CCC--cCCCCCEEEcCCCcCCcCCC--CCCCCCEEECcCCcCCCCCC---CCCCcCE-
Confidence            678888888876541       111  12777888888887777776  56777788887777777655   4455666 


Q ss_pred             HhhccccccccCCCCCCCCCCCCccEEEccCCCCCcccCccc---c--------------CcccCcEEecCCCCCccccc
Q 037308          109 INATCNKLIAKTPNPTLMPHLNKLVILNLRGSKSLKSLPSGI---F--------------NLEFLTKLDLSGCSKLKRLL  171 (321)
Q Consensus       109 l~l~~~~l~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~l---~--------------~l~~L~~L~l~~~~~~~~~~  171 (321)
                      ++++.|.++ .+|.  .   +++|++|++++|.+. .+|..+   .              .+++|+.|++++|. ++.++
T Consensus       126 L~L~~N~l~-~lp~--~---l~~L~~L~Ls~N~l~-~l~~~~~~L~~L~L~~N~l~~l~~~~~~L~~L~Ls~N~-l~~l~  197 (622)
T 3g06_A          126 LWIFGNQLT-SLPV--L---PPGLQELSVSDNQLA-SLPALPSELCKLWAYNNQLTSLPMLPSGLQELSVSDNQ-LASLP  197 (622)
T ss_dssp             EECCSSCCS-CCCC--C---CTTCCEEECCSSCCS-CCCCCCTTCCEEECCSSCCSCCCCCCTTCCEEECCSSC-CSCCC
T ss_pred             EECCCCCCC-cCCC--C---CCCCCEEECcCCcCC-CcCCccCCCCEEECCCCCCCCCcccCCCCcEEECCCCC-CCCCC
Confidence            777777776 5553  2   366777777776633 333211   1              22566666666654 33344


Q ss_pred             ccccCCccEEEeccccccccChhhhccCCCCeEecccCcccccccccccCCCCCCEEEecCCCCCCccccccCCCCCCcE
Q 037308          172 EISSGNINWLFLRETAIEELPSSIERLLRLGHLDLSDCKRLKSLPSSLFKLKSLGVLNLGGCSNLQRLPECLGQLSSPII  251 (321)
Q Consensus       172 ~~~~~~L~~L~l~~~~i~~l~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~  251 (321)
                      .. +++|+.|++++|.++.+|..   +++|++|++++|.+.+ +|   ..+++|+.|++++|.+. .+|.   .+++|+.
T Consensus       198 ~~-~~~L~~L~L~~N~l~~l~~~---~~~L~~L~Ls~N~L~~-lp---~~l~~L~~L~Ls~N~L~-~lp~---~~~~L~~  265 (622)
T 3g06_A          198 TL-PSELYKLWAYNNRLTSLPAL---PSGLKELIVSGNRLTS-LP---VLPSELKELMVSGNRLT-SLPM---LPSGLLS  265 (622)
T ss_dssp             CC-CTTCCEEECCSSCCSSCCCC---CTTCCEEECCSSCCSC-CC---CCCTTCCEEECCSSCCS-CCCC---CCTTCCE
T ss_pred             Cc-cchhhEEECcCCcccccCCC---CCCCCEEEccCCccCc-CC---CCCCcCcEEECCCCCCC-cCCc---ccccCcE
Confidence            43 56677777777776666642   3678888888887665 44   45678888888887665 4554   5678899


Q ss_pred             EEcccCCCcccchhhhccCCcCEEeccCCCC
Q 037308          252 LNLAKTNVERIPESIIQLFVLRYLLLSYSER  282 (321)
Q Consensus       252 L~l~~n~l~~l~~~l~~l~~L~~L~l~~n~~  282 (321)
                      |++++|.++.+|..+..+++|+.|++++|+.
T Consensus       266 L~Ls~N~L~~lp~~l~~l~~L~~L~L~~N~l  296 (622)
T 3g06_A          266 LSVYRNQLTRLPESLIHLSSETTVNLEGNPL  296 (622)
T ss_dssp             EECCSSCCCSCCGGGGGSCTTCEEECCSCCC
T ss_pred             EeCCCCCCCcCCHHHhhccccCEEEecCCCC
Confidence            9999999988888888889999999999844

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}

Probab=99.89  E-value=2.1e-24  Score=190.55  Aligned_cols=231  Identities=12%  Similarity=0.080  Sum_probs=190.1

Q ss_pred             eecCchhhhccChhhhcCCCCceEEEEeecCCCCccccceeccCCCCc-CcccEEEecCCCCCCCCCcCCcCceeEEecc
Q 037308           10 LDMSTVKEIRLNLSTFTKMPKLRFLKFYSSSFNGENKCKVSYLQDPRF-AEVKYFHWHGYPLKSLPSNLSAEKLVFLKVP   88 (321)
Q Consensus        10 l~~~~~~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~l~~-~~L~~l~l~~~~l~~~~~~~~l~~L~~L~l~   88 (321)
                      ||++++......+..++.+++|++|++++|.+++.       ++ +.. ++|++|++++|.+..++.   .++|++|+++
T Consensus        39 L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~-------~~-~~~l~~L~~L~Ls~n~l~~l~~---~~~L~~L~l~  107 (317)
T 3o53_A           39 LDLSGNPLSQISAADLAPFTKLELLNLSSNVLYET-------LD-LESLSTLRTLDLNNNYVQELLV---GPSIETLHAA  107 (317)
T ss_dssp             EECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEE-------EE-ETTCTTCCEEECCSSEEEEEEE---CTTCCEEECC
T ss_pred             EECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcc-------hh-hhhcCCCCEEECcCCccccccC---CCCcCEEECC
Confidence            45566666667778899999999999999985432       11 555 999999999999877663   4899999999


Q ss_pred             CCcccccccCCCCCCChHhHHhhccccccccCCCCCCCCCCCCccEEEccCCCCCcccCccc-cCcccCcEEecCCCCCc
Q 037308           89 YSDIEQLWNGEKHYSNLNQIINATCNKLIAKTPNPTLMPHLNKLVILNLRGSKSLKSLPSGI-FNLEFLTKLDLSGCSKL  167 (321)
Q Consensus        89 ~~~l~~~~~~~~~l~~L~~~l~l~~~~l~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~l-~~l~~L~~L~l~~~~~~  167 (321)
                      +|.++.++..  .+++|+. ++++.|.+++..+.  .+..+++|++|++++|.+.+..+..+ ..+++|++|++++|...
T Consensus       108 ~n~l~~~~~~--~~~~L~~-L~l~~N~l~~~~~~--~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~  182 (317)
T 3o53_A          108 NNNISRVSCS--RGQGKKN-IYLANNKITMLRDL--DEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIY  182 (317)
T ss_dssp             SSCCSEEEEC--CCSSCEE-EECCSSCCCSGGGB--CTGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCC
T ss_pred             CCccCCcCcc--ccCCCCE-EECCCCCCCCccch--hhhccCCCCEEECCCCCCCcccHHHHhhccCcCCEEECCCCcCc
Confidence            9999987653  4688999 99999999944443  67889999999999999776656555 47899999999998754


Q ss_pred             ccccccccCCccEEEeccccccccChhhhccCCCCeEecccCcccccccccccCCCCCCEEEecCCCCC-CccccccCCC
Q 037308          168 KRLLEISSGNINWLFLRETAIEELPSSIERLLRLGHLDLSDCKRLKSLPSSLFKLKSLGVLNLGGCSNL-QRLPECLGQL  246 (321)
Q Consensus       168 ~~~~~~~~~~L~~L~l~~~~i~~l~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~~~~~-~~~~~~~~~~  246 (321)
                      ...+...+++|++|++++|.++++|..+..+++|++|++++|.+. .+|..+..+++|+.|++++|.+. +.++..+..+
T Consensus       183 ~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~L~~L~L~~N~l~-~l~~~~~~l~~L~~L~l~~N~~~~~~~~~~~~~~  261 (317)
T 3o53_A          183 DVKGQVVFAKLKTLDLSSNKLAFMGPEFQSAAGVTWISLRNNKLV-LIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKN  261 (317)
T ss_dssp             EEECCCCCTTCCEEECCSSCCCEECGGGGGGTTCSEEECTTSCCC-EECTTCCCCTTCCEEECTTCCCBHHHHHHHHHTC
T ss_pred             ccccccccccCCEEECCCCcCCcchhhhcccCcccEEECcCCccc-chhhHhhcCCCCCEEEccCCCccCcCHHHHHhcc
Confidence            432222588999999999999999988999999999999999977 46777899999999999999988 6777888889


Q ss_pred             CCCcEEEcccC
Q 037308          247 SSPIILNLAKT  257 (321)
Q Consensus       247 ~~L~~L~l~~n  257 (321)
                      ++|+.+++.++
T Consensus       262 ~~L~~l~l~~~  272 (317)
T 3o53_A          262 QRVQTVAKQTV  272 (317)
T ss_dssp             HHHHHHHHHHH
T ss_pred             ccceEEECCCc
Confidence            99999988754

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.89  E-value=1.6e-23  Score=195.36  Aligned_cols=232  Identities=13%  Similarity=0.032  Sum_probs=186.4

Q ss_pred             CCCceEEEEeecCCCCccccceeccCCCCc-CcccEEEecCCCCCCCCCcCCcCceeEEeccCCcccccccCCCCCCChH
Q 037308           28 MPKLRFLKFYSSSFNGENKCKVSYLQDPRF-AEVKYFHWHGYPLKSLPSNLSAEKLVFLKVPYSDIEQLWNGEKHYSNLN  106 (321)
Q Consensus        28 l~~L~~L~l~~n~~~~~~~~~~~~~~~l~~-~~L~~l~l~~~~l~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~l~~L~  106 (321)
                      +++|++|++++|.+++.      .+..+.. ++|++|++++|.+..++....+++|++|++++|.++.++..    ++|+
T Consensus        33 ~~~L~~L~Ls~n~l~~~------~~~~~~~l~~L~~L~Ls~N~l~~~~~l~~l~~L~~L~Ls~N~l~~l~~~----~~L~  102 (487)
T 3oja_A           33 AWNVKELDLSGNPLSQI------SAADLAPFTKLELLNLSSNVLYETLDLESLSTLRTLDLNNNYVQELLVG----PSIE  102 (487)
T ss_dssp             GGGCCEEECCSSCCCCC------CGGGGTTCTTCCEEECTTSCCEEEEECTTCTTCCEEECCSSEEEEEEEC----TTCC
T ss_pred             CCCccEEEeeCCcCCCC------CHHHHhCCCCCCEEEeeCCCCCCCcccccCCCCCEEEecCCcCCCCCCC----CCcC
Confidence            44899999999986543      2234555 89999999999987665544899999999999999887643    7888


Q ss_pred             hHHhhccccccccCCCCCCCCCCCCccEEEccCCCCCcccCccccCcccCcEEecCCCCCccccccc---ccCCccEEEe
Q 037308          107 QIINATCNKLIAKTPNPTLMPHLNKLVILNLRGSKSLKSLPSGIFNLEFLTKLDLSGCSKLKRLLEI---SSGNINWLFL  183 (321)
Q Consensus       107 ~~l~l~~~~l~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~l~~l~~L~~L~l~~~~~~~~~~~~---~~~~L~~L~l  183 (321)
                      . ++++.|.+. .++.    ..+++|+.|++++|.+.+..|..++.+++|+.|++++|...+..|..   .+++|++|++
T Consensus       103 ~-L~L~~N~l~-~~~~----~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~L  176 (487)
T 3oja_A          103 T-LHAANNNIS-RVSC----SRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNL  176 (487)
T ss_dssp             E-EECCSSCCC-CEEE----CCCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEEC
T ss_pred             E-EECcCCcCC-CCCc----cccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEec
Confidence            8 999999998 4432    34688999999999977777777888999999999998766544443   3689999999


Q ss_pred             ccccccccChhhhccCCCCeEecccCcccccccccccCCCCCCEEEecCCCCCCccccccCCCCCCcEEEcccCCCc--c
Q 037308          184 RETAIEELPSSIERLLRLGHLDLSDCKRLKSLPSSLFKLKSLGVLNLGGCSNLQRLPECLGQLSSPIILNLAKTNVE--R  261 (321)
Q Consensus       184 ~~~~i~~l~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~--~  261 (321)
                      ++|.+++++. ...+++|++|++++|.+.+..+ .+..+++|+.|++++|.+.+ +|..+..+++|+.|++++|.+.  .
T Consensus       177 s~N~l~~~~~-~~~l~~L~~L~Ls~N~l~~~~~-~~~~l~~L~~L~Ls~N~l~~-lp~~l~~l~~L~~L~l~~N~l~c~~  253 (487)
T 3oja_A          177 QYNFIYDVKG-QVVFAKLKTLDLSSNKLAFMGP-EFQSAAGVTWISLRNNKLVL-IEKALRFSQNLEHFDLRGNGFHCGT  253 (487)
T ss_dssp             TTSCCCEEEC-CCCCTTCCEEECCSSCCCEECG-GGGGGTTCSEEECTTSCCCE-ECTTCCCCTTCCEEECTTCCBCHHH
T ss_pred             CCCccccccc-cccCCCCCEEECCCCCCCCCCH-hHcCCCCccEEEecCCcCcc-cchhhccCCCCCEEEcCCCCCcCcc
Confidence            9999998864 3458899999999999776544 48889999999999987764 7778888999999999999998  6


Q ss_pred             cchhhhccCCcCEEecc
Q 037308          262 IPESIIQLFVLRYLLLS  278 (321)
Q Consensus       262 l~~~l~~l~~L~~L~l~  278 (321)
                      +|.++..++.|+.+++.
T Consensus       254 ~~~~~~~l~~L~~l~~~  270 (487)
T 3oja_A          254 LRDFFSKNQRVQTVAKQ  270 (487)
T ss_dssp             HHHHHTTCHHHHHHHHH
T ss_pred             hHHHHHhCCCCcEEecc
Confidence            77788888888888775

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=99.89  E-value=5.5e-22  Score=171.51  Aligned_cols=216  Identities=18%  Similarity=0.129  Sum_probs=140.7

Q ss_pred             ecCCCCCCCCCcCCcCceeEEeccCCccccccc-CCCCCCChHhHHhhccccccccCCCCCCCCCCCCccEEEccCCCCC
Q 037308           65 WHGYPLKSLPSNLSAEKLVFLKVPYSDIEQLWN-GEKHYSNLNQIINATCNKLIAKTPNPTLMPHLNKLVILNLRGSKSL  143 (321)
Q Consensus        65 l~~~~l~~~~~~~~l~~L~~L~l~~~~l~~~~~-~~~~l~~L~~~l~l~~~~l~~~~~~~~~~~~l~~L~~L~l~~n~~~  143 (321)
                      ..+..+..+|..+ .++|++|++++|.++.++. .+..+++|+. ++++.|.+.+..+.  .+..+++|++|++++|.+.
T Consensus        14 c~~~~l~~ip~~l-~~~l~~L~ls~n~l~~~~~~~~~~l~~L~~-L~l~~n~l~~~~~~--~~~~l~~L~~L~L~~n~l~   89 (276)
T 2z62_A           14 CMELNFYKIPDNL-PFSTKNLDLSFNPLRHLGSYSFFSFPELQV-LDLSRCEIQTIEDG--AYQSLSHLSTLILTGNPIQ   89 (276)
T ss_dssp             CTTSCCSSCCSSS-CTTCCEEECTTCCCCEECTTTTTTCTTCSE-EECTTCCCCEECTT--TTTTCTTCCEEECTTCCCC
T ss_pred             ecCCCccccCCCC-CCCccEEECCCCcccccCHhHhccccCCcE-EECCCCcCCccCHH--HccCCcCCCEEECCCCccC
Confidence            3344444555433 2456666666666665543 4555666666 66666666522222  5666777777777777755


Q ss_pred             cccCccccCcccCcEEecCCCCCccccc--ccccCCccEEEeccccccc--cChhhhccCCCCeEecccCcccccccccc
Q 037308          144 KSLPSGIFNLEFLTKLDLSGCSKLKRLL--EISSGNINWLFLRETAIEE--LPSSIERLLRLGHLDLSDCKRLKSLPSSL  219 (321)
Q Consensus       144 ~~~p~~l~~l~~L~~L~l~~~~~~~~~~--~~~~~~L~~L~l~~~~i~~--l~~~~~~l~~L~~L~l~~n~~~~~~~~~~  219 (321)
                      +..+..+.++++|++|++++|...+..+  ...+++|++|++++|.+++  +|..+..+++|++|++++|.+.+..+..+
T Consensus        90 ~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~~~  169 (276)
T 2z62_A           90 SLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDL  169 (276)
T ss_dssp             EECTTTTTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGG
T ss_pred             ccChhhhcCCccccEEECCCCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCcCCHHHh
Confidence            5555556777777777777765433222  1146677777777777776  56778888888888888888777666666


Q ss_pred             cCCCCCC----EEEecCCCCCCccccccCCCCCCcEEEcccCCCcccch-hhhccCCcCEEeccCCCCccc
Q 037308          220 FKLKSLG----VLNLGGCSNLQRLPECLGQLSSPIILNLAKTNVERIPE-SIIQLFVLRYLLLSYSERIQS  285 (321)
Q Consensus       220 ~~l~~L~----~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~l~~-~l~~l~~L~~L~l~~n~~l~~  285 (321)
                      ..+++|+    .|++++|.+.+..+..+ ...+|+.|++++|+++.+|. .+..+++|++|++++|+.-.+
T Consensus       170 ~~l~~L~~l~l~L~ls~n~l~~~~~~~~-~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~  239 (276)
T 2z62_A          170 RVLHQMPLLNLSLDLSLNPMNFIQPGAF-KEIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCS  239 (276)
T ss_dssp             HHHHTCTTCCEEEECCSSCCCEECTTSS-CSCCEEEEECCSSCCSCCCTTTTTTCCSCCEEECCSSCBCCC
T ss_pred             hhhhhccccceeeecCCCcccccCcccc-CCCcccEEECCCCceeecCHhHhcccccccEEEccCCccccc
Confidence            6666666    78888877665444433 34478888888888887775 457788888888888854444

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.88  E-value=1.1e-23  Score=196.44  Aligned_cols=233  Identities=12%  Similarity=0.075  Sum_probs=192.2

Q ss_pred             ceEEEEeecCchhhhccChhhhcCCCCceEEEEeecCCCCccccceeccCCCCc-CcccEEEecCCCCCCCCCcCCcCce
Q 037308            4 KIEGICLDMSTVKEIRLNLSTFTKMPKLRFLKFYSSSFNGENKCKVSYLQDPRF-AEVKYFHWHGYPLKSLPSNLSAEKL   82 (321)
Q Consensus         4 ~~~~~~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~l~~-~~L~~l~l~~~~l~~~~~~~~l~~L   82 (321)
                      +++.  |+++++......+..|+.+++|++|++++|.+++..       + +.. ++|++|++++|.+..++.   .++|
T Consensus        35 ~L~~--L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~-------~-l~~l~~L~~L~Ls~N~l~~l~~---~~~L  101 (487)
T 3oja_A           35 NVKE--LDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETL-------D-LESLSTLRTLDLNNNYVQELLV---GPSI  101 (487)
T ss_dssp             GCCE--EECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEE-------E-CTTCTTCCEEECCSSEEEEEEE---CTTC
T ss_pred             CccE--EEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCc-------c-cccCCCCCEEEecCCcCCCCCC---CCCc
Confidence            3444  455566556677788999999999999999865321       1 555 999999999999887764   3899


Q ss_pred             eEEeccCCcccccccCCCCCCChHhHHhhccccccccCCCCCCCCCCCCccEEEccCCCCCcccCcccc-CcccCcEEec
Q 037308           83 VFLKVPYSDIEQLWNGEKHYSNLNQIINATCNKLIAKTPNPTLMPHLNKLVILNLRGSKSLKSLPSGIF-NLEFLTKLDL  161 (321)
Q Consensus        83 ~~L~l~~~~l~~~~~~~~~l~~L~~~l~l~~~~l~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~l~-~l~~L~~L~l  161 (321)
                      ++|++++|.+..++..  .+++|+. ++++.|.+++..+.  .+..+++|++|++++|.+.+..|..+. .+++|+.|++
T Consensus       102 ~~L~L~~N~l~~~~~~--~l~~L~~-L~L~~N~l~~~~~~--~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~L  176 (487)
T 3oja_A          102 ETLHAANNNISRVSCS--RGQGKKN-IYLANNKITMLRDL--DEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNL  176 (487)
T ss_dssp             CEEECCSSCCCCEEEC--CCSSCEE-EECCSSCCCSGGGB--CGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEEC
T ss_pred             CEEECcCCcCCCCCcc--ccCCCCE-EECCCCCCCCCCch--hhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEec
Confidence            9999999999987653  4688999 99999999955554  788899999999999998877777665 7999999999


Q ss_pred             CCCCCcccccccccCCccEEEeccccccccChhhhccCCCCeEecccCcccccccccccCCCCCCEEEecCCCCC-Cccc
Q 037308          162 SGCSKLKRLLEISSGNINWLFLRETAIEELPSSIERLLRLGHLDLSDCKRLKSLPSSLFKLKSLGVLNLGGCSNL-QRLP  240 (321)
Q Consensus       162 ~~~~~~~~~~~~~~~~L~~L~l~~~~i~~l~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~~~~~-~~~~  240 (321)
                      ++|...+..+...+++|+.|++++|.++++|..+..+++|+.|++++|.+.+ +|..++.+++|+.|++++|.+. +.+|
T Consensus       177 s~N~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~l~~L~~L~Ls~N~l~~-lp~~l~~l~~L~~L~l~~N~l~c~~~~  255 (487)
T 3oja_A          177 QYNFIYDVKGQVVFAKLKTLDLSSNKLAFMGPEFQSAAGVTWISLRNNKLVL-IEKALRFSQNLEHFDLRGNGFHCGTLR  255 (487)
T ss_dssp             TTSCCCEEECCCCCTTCCEEECCSSCCCEECGGGGGGTTCSEEECTTSCCCE-ECTTCCCCTTCCEEECTTCCBCHHHHH
T ss_pred             CCCccccccccccCCCCCEEECCCCCCCCCCHhHcCCCCccEEEecCCcCcc-cchhhccCCCCCEEEcCCCCCcCcchH
Confidence            9987554433336889999999999999999889999999999999999775 6777899999999999999887 5667


Q ss_pred             cccCCCCCCcEEEcc
Q 037308          241 ECLGQLSSPIILNLA  255 (321)
Q Consensus       241 ~~~~~~~~L~~L~l~  255 (321)
                      ..+..++.|+.++++
T Consensus       256 ~~~~~l~~L~~l~~~  270 (487)
T 3oja_A          256 DFFSKNQRVQTVAKQ  270 (487)
T ss_dssp             HHHTTCHHHHHHHHH
T ss_pred             HHHHhCCCCcEEecc
Confidence            778888888888775

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}

Probab=99.88  E-value=3.4e-21  Score=183.90  Aligned_cols=235  Identities=20%  Similarity=0.136  Sum_probs=168.3

Q ss_pred             CCceEEEEeecCCCCccccceeccCCCCcCcccEEEecCCCCCCCCCcCCcCceeEEeccCCcccccccCCCCCCChHhH
Q 037308           29 PKLRFLKFYSSSFNGENKCKVSYLQDPRFAEVKYFHWHGYPLKSLPSNLSAEKLVFLKVPYSDIEQLWNGEKHYSNLNQI  108 (321)
Q Consensus        29 ~~L~~L~l~~n~~~~~~~~~~~~~~~l~~~~L~~l~l~~~~l~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~l~~L~~~  108 (321)
                      .++++|++++|.++       ..+..+. ++|++|++++|.+..+|.  .+++|++|++++|.++.++.   .+++|+. 
T Consensus        40 ~~l~~L~ls~n~L~-------~lp~~l~-~~L~~L~L~~N~l~~lp~--~l~~L~~L~Ls~N~l~~lp~---~l~~L~~-  105 (622)
T 3g06_A           40 NGNAVLNVGESGLT-------TLPDCLP-AHITTLVIPDNNLTSLPA--LPPELRTLEVSGNQLTSLPV---LPPGLLE-  105 (622)
T ss_dssp             HCCCEEECCSSCCS-------CCCSCCC-TTCSEEEECSCCCSCCCC--CCTTCCEEEECSCCCSCCCC---CCTTCCE-
T ss_pred             CCCcEEEecCCCcC-------ccChhhC-CCCcEEEecCCCCCCCCC--cCCCCCEEEcCCCcCCcCCC---CCCCCCE-
Confidence            36899999998754       2222222 899999999999999988  68999999999999998876   6788999 


Q ss_pred             HhhccccccccCCCCCCCCCCCCccEEEccCCCCCcccCccccCcccCcEEecCCCCCcccccccccCCccEEEeccccc
Q 037308          109 INATCNKLIAKTPNPTLMPHLNKLVILNLRGSKSLKSLPSGIFNLEFLTKLDLSGCSKLKRLLEISSGNINWLFLRETAI  188 (321)
Q Consensus       109 l~l~~~~l~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~i  188 (321)
                      |+++.|.++ .++.     .+++|++|++++|. +..+|..   +++|++|++++|. ++.++.. +++|+.|++++|.+
T Consensus       106 L~Ls~N~l~-~l~~-----~l~~L~~L~L~~N~-l~~lp~~---l~~L~~L~Ls~N~-l~~l~~~-~~~L~~L~L~~N~l  173 (622)
T 3g06_A          106 LSIFSNPLT-HLPA-----LPSGLCKLWIFGNQ-LTSLPVL---PPGLQELSVSDNQ-LASLPAL-PSELCKLWAYNNQL  173 (622)
T ss_dssp             EEECSCCCC-CCCC-----CCTTCCEEECCSSC-CSCCCCC---CTTCCEEECCSSC-CSCCCCC-CTTCCEEECCSSCC
T ss_pred             EECcCCcCC-CCCC-----CCCCcCEEECCCCC-CCcCCCC---CCCCCEEECcCCc-CCCcCCc-cCCCCEEECCCCCC
Confidence            999999998 6663     57899999999998 4456763   5899999999975 4444443 56666676666666


Q ss_pred             cccChhhhccCCCCeEecccCcccccccccc-----------------cCCCCCCEEEecCCCCCCccccccCCCCCCcE
Q 037308          189 EELPSSIERLLRLGHLDLSDCKRLKSLPSSL-----------------FKLKSLGVLNLGGCSNLQRLPECLGQLSSPII  251 (321)
Q Consensus       189 ~~l~~~~~~l~~L~~L~l~~n~~~~~~~~~~-----------------~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~  251 (321)
                      +.+|   ..+++|+.|++++|.+.+ +|..+                 ..+++|+.|++++|.+.+ +|   ..+++|+.
T Consensus       174 ~~l~---~~~~~L~~L~Ls~N~l~~-l~~~~~~L~~L~L~~N~l~~l~~~~~~L~~L~Ls~N~L~~-lp---~~l~~L~~  245 (622)
T 3g06_A          174 TSLP---MLPSGLQELSVSDNQLAS-LPTLPSELYKLWAYNNRLTSLPALPSGLKELIVSGNRLTS-LP---VLPSELKE  245 (622)
T ss_dssp             SCCC---CCCTTCCEEECCSSCCSC-CCCCCTTCCEEECCSSCCSSCCCCCTTCCEEECCSSCCSC-CC---CCCTTCCE
T ss_pred             CCCc---ccCCCCcEEECCCCCCCC-CCCccchhhEEECcCCcccccCCCCCCCCEEEccCCccCc-CC---CCCCcCcE
Confidence            6666   234556666666665443 22111                 123567777777766544 44   35577888


Q ss_pred             EEcccCCCcccchhhhccCCcCEEeccCCCCccccc----CccccccccccccC
Q 037308          252 LNLAKTNVERIPESIIQLFVLRYLLLSYSERIQSVS----LPLARGILEDTQRS  301 (321)
Q Consensus       252 L~l~~n~l~~l~~~l~~l~~L~~L~l~~n~~l~~~~----~~~~l~~l~~~~~~  301 (321)
                      |++++|.++.+|.   .+++|++|++++| .++.+|    ..++++.|++.++.
T Consensus       246 L~Ls~N~L~~lp~---~~~~L~~L~Ls~N-~L~~lp~~l~~l~~L~~L~L~~N~  295 (622)
T 3g06_A          246 LMVSGNRLTSLPM---LPSGLLSLSVYRN-QLTRLPESLIHLSSETTVNLEGNP  295 (622)
T ss_dssp             EECCSSCCSCCCC---CCTTCCEEECCSS-CCCSCCGGGGGSCTTCEEECCSCC
T ss_pred             EECCCCCCCcCCc---ccccCcEEeCCCC-CCCcCCHHHhhccccCEEEecCCC
Confidence            8888888887776   5678888888888 777776    22455666665543

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=99.88  E-value=1.9e-23  Score=184.05  Aligned_cols=243  Identities=19%  Similarity=0.155  Sum_probs=165.5

Q ss_pred             hcCCCCceEEEEeecCCCCccccceeccCCCCcCcccEEEecCCCCCC--CCCcC--------CcCceeEEeccCCcccc
Q 037308           25 FTKMPKLRFLKFYSSSFNGENKCKVSYLQDPRFAEVKYFHWHGYPLKS--LPSNL--------SAEKLVFLKVPYSDIEQ   94 (321)
Q Consensus        25 l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~l~~~~L~~l~l~~~~l~~--~~~~~--------~l~~L~~L~l~~~~l~~   94 (321)
                      ++..++|++|++.+|.+  ..+      ..+. ..|+.++++++.+..  ++...        .+++|++|++++|+++.
T Consensus        39 ~~~~~~L~~l~l~~n~l--~~p------~~~~-~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~  109 (312)
T 1wwl_A           39 YGGGRSLEYLLKRVDTE--ADL------GQFT-DIIKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTG  109 (312)
T ss_dssp             EEEEEECTTHHHHCCTT--CCC------HHHH-HHHHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBS
T ss_pred             EccCCCceeEeeccccc--ccH------HHHH-HHHhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccc
Confidence            34445666666666653  111      1011 236666666665532  33322        47788888888888774


Q ss_pred             -cccCC--CCCCChHhHHhhccccccccCCCCCCCCCC-----CCccEEEccCCCCCcccCccccCcccCcEEecCCCCC
Q 037308           95 -LWNGE--KHYSNLNQIINATCNKLIAKTPNPTLMPHL-----NKLVILNLRGSKSLKSLPSGIFNLEFLTKLDLSGCSK  166 (321)
Q Consensus        95 -~~~~~--~~l~~L~~~l~l~~~~l~~~~~~~~~~~~l-----~~L~~L~l~~n~~~~~~p~~l~~l~~L~~L~l~~~~~  166 (321)
                       ++..+  ..+++|+. ++++.|.++ ..|.  .+..+     ++|++|++++|.+.+..|..++.+++|++|++++|..
T Consensus       110 ~~~~~~~~~~l~~L~~-L~Ls~N~l~-~~~~--~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l  185 (312)
T 1wwl_A          110 TAPPPLLEATGPDLNI-LNLRNVSWA-TRDA--WLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPE  185 (312)
T ss_dssp             CCCCCSSSCCSCCCSE-EEEESCBCS-SSSS--HHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTT
T ss_pred             hhHHHHHHhcCCCccE-EEccCCCCc-chhH--HHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCc
Confidence             44444  67777888 888888887 4454  55554     7888888888886666556788888888888888765


Q ss_pred             cccc--c-c---cccCCccEEEeccccccccC---hh-hhccCCCCeEecccCccccccc-ccccCCCCCCEEEecCCCC
Q 037308          167 LKRL--L-E---ISSGNINWLFLRETAIEELP---SS-IERLLRLGHLDLSDCKRLKSLP-SSLFKLKSLGVLNLGGCSN  235 (321)
Q Consensus       167 ~~~~--~-~---~~~~~L~~L~l~~~~i~~l~---~~-~~~l~~L~~L~l~~n~~~~~~~-~~~~~l~~L~~L~l~~~~~  235 (321)
                      .+..  + .   ..+++|++|++++|.+++++   .. +..+++|++|++++|.+.+..| ..+..+++|+.|++++|.+
T Consensus       186 ~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l  265 (312)
T 1wwl_A          186 LGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGL  265 (312)
T ss_dssp             CHHHHHHHHSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCCCTTCCEEECTTSCC
T ss_pred             CcchHHHHHHHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhhhcCCCCEEECCCCcc
Confidence            4431  1 1   24678888888888888543   22 3566888888888888777654 4456678888888888776


Q ss_pred             CCccccccCCCCCCcEEEcccCCCcccchhhhccCCcCEEeccCCCCccc
Q 037308          236 LQRLPECLGQLSSPIILNLAKTNVERIPESIIQLFVLRYLLLSYSERIQS  285 (321)
Q Consensus       236 ~~~~~~~~~~~~~L~~L~l~~n~l~~l~~~l~~l~~L~~L~l~~n~~l~~  285 (321)
                      . .+|..+.  ++|+.|++++|+++.+|. +..+++|++|++++| .+++
T Consensus       266 ~-~ip~~~~--~~L~~L~Ls~N~l~~~p~-~~~l~~L~~L~L~~N-~l~~  310 (312)
T 1wwl_A          266 K-QVPKGLP--AKLSVLDLSYNRLDRNPS-PDELPQVGNLSLKGN-PFLD  310 (312)
T ss_dssp             S-SCCSSCC--SEEEEEECCSSCCCSCCC-TTTSCEEEEEECTTC-TTTC
T ss_pred             C-hhhhhcc--CCceEEECCCCCCCCChh-HhhCCCCCEEeccCC-CCCC
Confidence            5 6666555  788888888888887776 778888888888888 4443

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=99.87  E-value=1.5e-23  Score=184.74  Aligned_cols=233  Identities=18%  Similarity=0.081  Sum_probs=183.8

Q ss_pred             CcccEEEecCCCCCCCCCcCCcCceeEEeccCCccccc--ccCCC-------CCCChHhHHhhccccccccCCCCCCC--
Q 037308           58 AEVKYFHWHGYPLKSLPSNLSAEKLVFLKVPYSDIEQL--WNGEK-------HYSNLNQIINATCNKLIAKTPNPTLM--  126 (321)
Q Consensus        58 ~~L~~l~l~~~~l~~~~~~~~l~~L~~L~l~~~~l~~~--~~~~~-------~l~~L~~~l~l~~~~l~~~~~~~~~~--  126 (321)
                      ++|+.+++++|.+ .+|..+. ..|+.|++++|.+...  +....       .+++|++ ++++.|.+++..|.  .+  
T Consensus        43 ~~L~~l~l~~n~l-~~p~~~~-~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~-L~L~~n~l~~~~~~--~~~~  117 (312)
T 1wwl_A           43 RSLEYLLKRVDTE-ADLGQFT-DIIKSLSLKRLTVRAARIPSRILFGALRVLGISGLQE-LTLENLEVTGTAPP--PLLE  117 (312)
T ss_dssp             EECTTHHHHCCTT-CCCHHHH-HHHHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCE-EEEEEEBCBSCCCC--CSSS
T ss_pred             CCceeEeeccccc-ccHHHHH-HHHhhcccccccccCCCcCHHHHHHHHHhcCcCCccE-EEccCCcccchhHH--HHHH
Confidence            7899999999998 7776542 2289999999998653  33333       5888999 99999999977776  44  


Q ss_pred             CCCCCccEEEccCCCCCcccCccccCc-----ccCcEEecCCCCCccccccc--ccCCccEEEeccccccc---cChhh-
Q 037308          127 PHLNKLVILNLRGSKSLKSLPSGIFNL-----EFLTKLDLSGCSKLKRLLEI--SSGNINWLFLRETAIEE---LPSSI-  195 (321)
Q Consensus       127 ~~l~~L~~L~l~~n~~~~~~p~~l~~l-----~~L~~L~l~~~~~~~~~~~~--~~~~L~~L~l~~~~i~~---l~~~~-  195 (321)
                      ..+++|++|++++|.+.+. |..+..+     ++|++|++++|...+..+..  .+++|++|++++|.+.+   ++..+ 
T Consensus       118 ~~l~~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~  196 (312)
T 1wwl_A          118 ATGPDLNILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALC  196 (312)
T ss_dssp             CCSCCCSEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHHHHHHSC
T ss_pred             hcCCCccEEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchHHHHHHH
Confidence            8999999999999996665 7777776     89999999998755444333  58899999999999765   34344 


Q ss_pred             -hccCCCCeEecccCcccc--ccc-ccccCCCCCCEEEecCCCCCCccc-cccCCCCCCcEEEcccCCCcccchhhhccC
Q 037308          196 -ERLLRLGHLDLSDCKRLK--SLP-SSLFKLKSLGVLNLGGCSNLQRLP-ECLGQLSSPIILNLAKTNVERIPESIIQLF  270 (321)
Q Consensus       196 -~~l~~L~~L~l~~n~~~~--~~~-~~~~~l~~L~~L~l~~~~~~~~~~-~~~~~~~~L~~L~l~~n~l~~l~~~l~~l~  270 (321)
                       ..+++|++|++++|.+.+  ..+ ..+..+++|+.|++++|.+.+..| ..+..+++|+.|++++|.++.+|..+.  +
T Consensus       197 ~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~~ip~~~~--~  274 (312)
T 1wwl_A          197 PLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLKQVPKGLP--A  274 (312)
T ss_dssp             TTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCCCTTCCEEECTTSCCSSCCSSCC--S
T ss_pred             hccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhhhcCCCCEEECCCCccChhhhhcc--C
Confidence             788999999999999773  222 345688999999999999888764 456678999999999999999998766  8


Q ss_pred             CcCEEeccCCCCccccc---Cccccccccccc
Q 037308          271 VLRYLLLSYSERIQSVS---LPLARGILEDTQ  299 (321)
Q Consensus       271 ~L~~L~l~~n~~l~~~~---~~~~l~~l~~~~  299 (321)
                      +|++|++++| .++.+|   ..++++.|++.+
T Consensus       275 ~L~~L~Ls~N-~l~~~p~~~~l~~L~~L~L~~  305 (312)
T 1wwl_A          275 KLSVLDLSYN-RLDRNPSPDELPQVGNLSLKG  305 (312)
T ss_dssp             EEEEEECCSS-CCCSCCCTTTSCEEEEEECTT
T ss_pred             CceEEECCCC-CCCCChhHhhCCCCCEEeccC
Confidence            9999999999 888877   234555555554

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=99.87  E-value=6.2e-21  Score=164.46  Aligned_cols=198  Identities=18%  Similarity=0.172  Sum_probs=114.2

Q ss_pred             CcccEEEecCCCCCCCCCcCCcCceeEEeccCCccccccc-CCCCCCChHhHHhhccccccccCCCCCCCCCCCCccEEE
Q 037308           58 AEVKYFHWHGYPLKSLPSNLSAEKLVFLKVPYSDIEQLWN-GEKHYSNLNQIINATCNKLIAKTPNPTLMPHLNKLVILN  136 (321)
Q Consensus        58 ~~L~~l~l~~~~l~~~~~~~~l~~L~~L~l~~~~l~~~~~-~~~~l~~L~~~l~l~~~~l~~~~~~~~~~~~l~~L~~L~  136 (321)
                      ...+.++++++.++.+|..+. +++++|++++|.++.++. .+..+++|+. ++++.|.++ .++. ..+..+++|++|+
T Consensus        16 ~~~~~l~~~~~~l~~ip~~~~-~~l~~L~l~~n~l~~~~~~~~~~l~~L~~-L~l~~n~l~-~i~~-~~~~~l~~L~~L~   91 (270)
T 2o6q_A           16 NNKNSVDCSSKKLTAIPSNIP-ADTKKLDLQSNKLSSLPSKAFHRLTKLRL-LYLNDNKLQ-TLPA-GIFKELKNLETLW   91 (270)
T ss_dssp             TTTTEEECTTSCCSSCCSCCC-TTCSEEECCSSCCSCCCTTSSSSCTTCCE-EECCSSCCS-CCCT-TTTSSCTTCCEEE
T ss_pred             CCCCEEEccCCCCCccCCCCC-CCCCEEECcCCCCCeeCHHHhcCCCCCCE-EECCCCccC-eeCh-hhhcCCCCCCEEE
Confidence            567899999999998887653 689999999999887654 5666777777 777777776 5543 1456677777777


Q ss_pred             ccCCCCCcccCccccCcccCcEEecCCCCCccccccc--ccCCccEEEeccccccccChh-hhccCCCCeEecccCcccc
Q 037308          137 LRGSKSLKSLPSGIFNLEFLTKLDLSGCSKLKRLLEI--SSGNINWLFLRETAIEELPSS-IERLLRLGHLDLSDCKRLK  213 (321)
Q Consensus       137 l~~n~~~~~~p~~l~~l~~L~~L~l~~~~~~~~~~~~--~~~~L~~L~l~~~~i~~l~~~-~~~l~~L~~L~l~~n~~~~  213 (321)
                      +++|.+....+..+..+++|++|++++|......+..  .+++|++|++++|.+++++.. +..+++|++|++++|.+.+
T Consensus        92 l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~  171 (270)
T 2o6q_A           92 VTDNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKR  171 (270)
T ss_dssp             CCSSCCCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSC
T ss_pred             CCCCcCCcCCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCcCCccCHhHccCCcccceeEecCCcCcE
Confidence            7777644433344566666666666665432222111  244455555555554444432 3444445555554444444


Q ss_pred             cccccccCCCCCCEEEecCCCCCCccccccCCCCCCcEEEcccCCC
Q 037308          214 SLPSSLFKLKSLGVLNLGGCSNLQRLPECLGQLSSPIILNLAKTNV  259 (321)
Q Consensus       214 ~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l  259 (321)
                      ..+..+..+++|+.|++++|.+.+..+..+..+++|+.|++++|.+
T Consensus       172 ~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~  217 (270)
T 2o6q_A          172 VPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQENPW  217 (270)
T ss_dssp             CCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCB
T ss_pred             eChhHhccCCCcCEEECCCCcCCcCCHHHhccccCCCEEEecCCCe
Confidence            3333344444444444444444333333344444444444444444

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=99.87  E-value=9.3e-21  Score=163.36  Aligned_cols=196  Identities=20%  Similarity=0.161  Sum_probs=133.2

Q ss_pred             ceeEEeccCCcccccccCCCCCCChHhHHhhccccccccCCCCCCCCCCCCccEEEccCCCCCcccCccccCcccCcEEe
Q 037308           81 KLVFLKVPYSDIEQLWNGEKHYSNLNQIINATCNKLIAKTPNPTLMPHLNKLVILNLRGSKSLKSLPSGIFNLEFLTKLD  160 (321)
Q Consensus        81 ~L~~L~l~~~~l~~~~~~~~~l~~L~~~l~l~~~~l~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~l~~l~~L~~L~  160 (321)
                      +.+.++++++.++.++..+.  ++++. ++++.|.++ .++. ..+..+++|++|++++|.+....+..|..+++|++|+
T Consensus        17 ~~~~l~~~~~~l~~ip~~~~--~~l~~-L~l~~n~l~-~~~~-~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~   91 (270)
T 2o6q_A           17 NKNSVDCSSKKLTAIPSNIP--ADTKK-LDLQSNKLS-SLPS-KAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLW   91 (270)
T ss_dssp             TTTEEECTTSCCSSCCSCCC--TTCSE-EECCSSCCS-CCCT-TSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEE
T ss_pred             CCCEEEccCCCCCccCCCCC--CCCCE-EECcCCCCC-eeCH-HHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEE
Confidence            45677777777777665432  45666 777777777 4441 2577777788888877774433334456777788888


Q ss_pred             cCCCCCccccccc---ccCCccEEEeccccccccCh-hhhccCCCCeEecccCcccccccccccCCCCCCEEEecCCCCC
Q 037308          161 LSGCSKLKRLLEI---SSGNINWLFLRETAIEELPS-SIERLLRLGHLDLSDCKRLKSLPSSLFKLKSLGVLNLGGCSNL  236 (321)
Q Consensus       161 l~~~~~~~~~~~~---~~~~L~~L~l~~~~i~~l~~-~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~~~~~  236 (321)
                      +++|... .++..   .+++|++|++++|.++.++. .+..+++|++|++++|.+.+..+..++.+++|+.|++++|.+.
T Consensus        92 l~~n~l~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~  170 (270)
T 2o6q_A           92 VTDNKLQ-ALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLK  170 (270)
T ss_dssp             CCSSCCC-CCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCS
T ss_pred             CCCCcCC-cCCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCcCCccCHhHccCCcccceeEecCCcCc
Confidence            7776533 33321   35677778887777777664 3567777888888777766655555777777888888777766


Q ss_pred             CccccccCCCCCCcEEEcccCCCcccch-hhhccCCcCEEeccCCCC
Q 037308          237 QRLPECLGQLSSPIILNLAKTNVERIPE-SIIQLFVLRYLLLSYSER  282 (321)
Q Consensus       237 ~~~~~~~~~~~~L~~L~l~~n~l~~l~~-~l~~l~~L~~L~l~~n~~  282 (321)
                      +..+..+..+++|+.|++++|.++.+|. .+..+++|+.|++++|+.
T Consensus       171 ~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~  217 (270)
T 2o6q_A          171 RVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQENPW  217 (270)
T ss_dssp             CCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCB
T ss_pred             EeChhHhccCCCcCEEECCCCcCCcCCHHHhccccCCCEEEecCCCe
Confidence            6655567777778888887777776664 466677777888877753

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=99.87  E-value=2.6e-21  Score=168.54  Aligned_cols=195  Identities=22%  Similarity=0.170  Sum_probs=131.2

Q ss_pred             CcccEEEecCCCCCCCCCcCCcCceeEEeccCCcccccc-cCCCCCCChHhHHhhccccccccCCCCCCCCCCCCccEEE
Q 037308           58 AEVKYFHWHGYPLKSLPSNLSAEKLVFLKVPYSDIEQLW-NGEKHYSNLNQIINATCNKLIAKTPNPTLMPHLNKLVILN  136 (321)
Q Consensus        58 ~~L~~l~l~~~~l~~~~~~~~l~~L~~L~l~~~~l~~~~-~~~~~l~~L~~~l~l~~~~l~~~~~~~~~~~~l~~L~~L~  136 (321)
                      ++++.+++.++.+..+|..+. ++++.|++++|.++.+. ..+..+++|+. ++++.|.++ .++.   ...+++|++|+
T Consensus        10 ~~l~~l~~~~~~l~~ip~~~~-~~l~~L~L~~N~l~~~~~~~~~~l~~L~~-L~L~~n~l~-~~~~---~~~l~~L~~L~   83 (290)
T 1p9a_G           10 ASHLEVNCDKRNLTALPPDLP-KDTTILHLSENLLYTFSLATLMPYTRLTQ-LNLDRAELT-KLQV---DGTLPVLGTLD   83 (290)
T ss_dssp             TTCCEEECTTSCCSSCCSCCC-TTCCEEECTTSCCSEEEGGGGTTCTTCCE-EECTTSCCC-EEEC---CSCCTTCCEEE
T ss_pred             CCccEEECCCCCCCcCCCCCC-CCCCEEEcCCCcCCccCHHHhhcCCCCCE-EECCCCccC-cccC---CCCCCcCCEEE
Confidence            788999999999988887653 68899999999988764 45677777887 888888887 5553   36777888888


Q ss_pred             ccCCCCCcccCccccCcccCcEEecCCCCCccccccc--ccCCccEEEeccccccccChh-hhccCCCCeEecccCcccc
Q 037308          137 LRGSKSLKSLPSGIFNLEFLTKLDLSGCSKLKRLLEI--SSGNINWLFLRETAIEELPSS-IERLLRLGHLDLSDCKRLK  213 (321)
Q Consensus       137 l~~n~~~~~~p~~l~~l~~L~~L~l~~~~~~~~~~~~--~~~~L~~L~l~~~~i~~l~~~-~~~l~~L~~L~l~~n~~~~  213 (321)
                      +++|. +..+|..+..+++|+.|++++|...+..+..  .+++|++|++++|.++.+|.. +..+++|+.|++++|.+..
T Consensus        84 Ls~N~-l~~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~  162 (290)
T 1p9a_G           84 LSHNQ-LQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTE  162 (290)
T ss_dssp             CCSSC-CSSCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSC
T ss_pred             CCCCc-CCcCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCEEECCCCcCCc
Confidence            88877 4466666777777777777775433222211  355666666666666665543 4556666666666666554


Q ss_pred             cccccccCCCCCCEEEecCCCCCCccccccCCCCCCcEEEcccCCCc
Q 037308          214 SLPSSLFKLKSLGVLNLGGCSNLQRLPECLGQLSSPIILNLAKTNVE  260 (321)
Q Consensus       214 ~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~  260 (321)
                      ..+..+..+++|+.|++++|.+. .+|..+..+++|+.+++++|.+.
T Consensus       163 l~~~~~~~l~~L~~L~L~~N~l~-~ip~~~~~~~~L~~l~L~~Np~~  208 (290)
T 1p9a_G          163 LPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGNPWL  208 (290)
T ss_dssp             CCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCCCSEEECCSCCBC
T ss_pred             cCHHHhcCcCCCCEEECCCCcCC-ccChhhcccccCCeEEeCCCCcc
Confidence            44444556666666666665543 45555555666666666666655

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=99.86  E-value=1.1e-20  Score=164.53  Aligned_cols=200  Identities=18%  Similarity=0.126  Sum_probs=166.0

Q ss_pred             CcCceeEEeccCCcccccccCCCCCCChHhHHhhccccccccCCCCCCCCCCCCccEEEccCCCCCcccCccccCcccCc
Q 037308           78 SAEKLVFLKVPYSDIEQLWNGEKHYSNLNQIINATCNKLIAKTPNPTLMPHLNKLVILNLRGSKSLKSLPSGIFNLEFLT  157 (321)
Q Consensus        78 ~l~~L~~L~l~~~~l~~~~~~~~~l~~L~~~l~l~~~~l~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~l~~l~~L~  157 (321)
                      .++++++++++++.++.++.++.  ++++. ++++.|.+++..+.  .+..+++|++|++++|.+. .++. .+.+++|+
T Consensus         8 ~l~~l~~l~~~~~~l~~ip~~~~--~~l~~-L~L~~N~l~~~~~~--~~~~l~~L~~L~L~~n~l~-~~~~-~~~l~~L~   80 (290)
T 1p9a_G            8 KVASHLEVNCDKRNLTALPPDLP--KDTTI-LHLSENLLYTFSLA--TLMPYTRLTQLNLDRAELT-KLQV-DGTLPVLG   80 (290)
T ss_dssp             CSTTCCEEECTTSCCSSCCSCCC--TTCCE-EECTTSCCSEEEGG--GGTTCTTCCEEECTTSCCC-EEEC-CSCCTTCC
T ss_pred             ccCCccEEECCCCCCCcCCCCCC--CCCCE-EEcCCCcCCccCHH--HhhcCCCCCEEECCCCccC-cccC-CCCCCcCC
Confidence            57889999999999999887653  57777 99999999844444  7889999999999999854 4444 36899999


Q ss_pred             EEecCCCCCccccccc--ccCCccEEEeccccccccC-hhhhccCCCCeEecccCcccccccccccCCCCCCEEEecCCC
Q 037308          158 KLDLSGCSKLKRLLEI--SSGNINWLFLRETAIEELP-SSIERLLRLGHLDLSDCKRLKSLPSSLFKLKSLGVLNLGGCS  234 (321)
Q Consensus       158 ~L~l~~~~~~~~~~~~--~~~~L~~L~l~~~~i~~l~-~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~~~  234 (321)
                      .|++++|.. +.+|..  .+++|++|++++|.+++++ ..+..+++|++|++++|.+.+..+..+..+++|+.|++++|.
T Consensus        81 ~L~Ls~N~l-~~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~  159 (290)
T 1p9a_G           81 TLDLSHNQL-QSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNN  159 (290)
T ss_dssp             EEECCSSCC-SSCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSC
T ss_pred             EEECCCCcC-CcCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCEEECCCCc
Confidence            999999754 455543  4788999999999999987 458889999999999999887777778899999999999988


Q ss_pred             CCCccccccCCCCCCcEEEcccCCCcccchhhhccCCcCEEeccCCCCccc
Q 037308          235 NLQRLPECLGQLSSPIILNLAKTNVERIPESIIQLFVLRYLLLSYSERIQS  285 (321)
Q Consensus       235 ~~~~~~~~~~~~~~L~~L~l~~n~l~~l~~~l~~l~~L~~L~l~~n~~l~~  285 (321)
                      +.+..+..+..+++|+.|++++|+++.+|..+...+.|+.+++.+|+....
T Consensus       160 l~~l~~~~~~~l~~L~~L~L~~N~l~~ip~~~~~~~~L~~l~L~~Np~~C~  210 (290)
T 1p9a_G          160 LTELPAGLLNGLENLDTLLLQENSLYTIPKGFFGSHLLPFAFLHGNPWLCN  210 (290)
T ss_dssp             CSCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCCCSEEECCSCCBCCS
T ss_pred             CCccCHHHhcCcCCCCEEECCCCcCCccChhhcccccCCeEEeCCCCccCc
Confidence            876665667889999999999999999998888888999999999965443

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=99.86  E-value=2.5e-21  Score=170.17  Aligned_cols=193  Identities=17%  Similarity=0.189  Sum_probs=121.1

Q ss_pred             CcccEEEecCCCCCCCCCcCCcCceeEEeccCCcccccccCCCCCCChHhHHhhccccccccCCCCCCCCCCCCccEEEc
Q 037308           58 AEVKYFHWHGYPLKSLPSNLSAEKLVFLKVPYSDIEQLWNGEKHYSNLNQIINATCNKLIAKTPNPTLMPHLNKLVILNL  137 (321)
Q Consensus        58 ~~L~~l~l~~~~l~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~l~~L~~~l~l~~~~l~~~~~~~~~~~~l~~L~~L~l  137 (321)
                      ++|+.|++.++.+..++....+++|++|++++|.+..++. +..+++|+. ++++.|.++ .++   .+..+++|++|++
T Consensus        41 ~~L~~L~l~~~~i~~l~~~~~l~~L~~L~L~~n~i~~~~~-~~~l~~L~~-L~L~~n~l~-~~~---~~~~l~~L~~L~l  114 (308)
T 1h6u_A           41 DGITTLSAFGTGVTTIEGVQYLNNLIGLELKDNQITDLAP-LKNLTKITE-LELSGNPLK-NVS---AIAGLQSIKTLDL  114 (308)
T ss_dssp             HTCCEEECTTSCCCCCTTGGGCTTCCEEECCSSCCCCCGG-GTTCCSCCE-EECCSCCCS-CCG---GGTTCTTCCEEEC
T ss_pred             CCcCEEEeeCCCccCchhhhccCCCCEEEccCCcCCCChh-HccCCCCCE-EEccCCcCC-Cch---hhcCCCCCCEEEC
Confidence            7788888888888777754478888888888888877655 666777777 777777776 443   4666777777777


Q ss_pred             cCCCCCcccCccccCcccCcEEecCCCCCcccccccccCCccEEEeccccccccChhhhccCCCCeEecccCcccccccc
Q 037308          138 RGSKSLKSLPSGIFNLEFLTKLDLSGCSKLKRLLEISSGNINWLFLRETAIEELPSSIERLLRLGHLDLSDCKRLKSLPS  217 (321)
Q Consensus       138 ~~n~~~~~~p~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~i~~l~~~~~~l~~L~~L~l~~n~~~~~~~~  217 (321)
                      ++|.+. .+++ +..+++|++|++++|...+..+...+++|++|++++|.+++++. +..+++|++|++++|.+.+..+ 
T Consensus       115 ~~n~l~-~~~~-l~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~l~~n~l~~~~~-  190 (308)
T 1h6u_A          115 TSTQIT-DVTP-LAGLSNLQVLYLDLNQITNISPLAGLTNLQYLSIGNAQVSDLTP-LANLSKLTTLKADDNKISDISP-  190 (308)
T ss_dssp             TTSCCC-CCGG-GTTCTTCCEEECCSSCCCCCGGGGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCCCGG-
T ss_pred             CCCCCC-Cchh-hcCCCCCCEEECCCCccCcCccccCCCCccEEEccCCcCCCChh-hcCCCCCCEEECCCCccCcChh-
Confidence            777633 3443 66677777777776543322222235566666666666666554 5555666666666665544322 


Q ss_pred             cccCCCCCCEEEecCCCCCCccccccCCCCCCcEEEcccCCCcccc
Q 037308          218 SLFKLKSLGVLNLGGCSNLQRLPECLGQLSSPIILNLAKTNVERIP  263 (321)
Q Consensus       218 ~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~l~  263 (321)
                       +..+++|+.|++++|.+.+..  .+..+++|+.|++++|.++..|
T Consensus       191 -l~~l~~L~~L~L~~N~l~~~~--~l~~l~~L~~L~l~~N~i~~~~  233 (308)
T 1h6u_A          191 -LASLPNLIEVHLKNNQISDVS--PLANTSNLFIVTLTNQTITNQP  233 (308)
T ss_dssp             -GGGCTTCCEEECTTSCCCBCG--GGTTCTTCCEEEEEEEEEECCC
T ss_pred             -hcCCCCCCEEEccCCccCccc--cccCCCCCCEEEccCCeeecCC
Confidence             455666666666665554433  2555666666666666655444

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=99.86  E-value=6.9e-21  Score=167.35  Aligned_cols=194  Identities=19%  Similarity=0.255  Sum_probs=107.7

Q ss_pred             CcCceeEEeccCCcccccccCCCCCCChHhHHhhccccccccCCCCCCCCCCCCccEEEccCCCCCcccCccccCcccCc
Q 037308           78 SAEKLVFLKVPYSDIEQLWNGEKHYSNLNQIINATCNKLIAKTPNPTLMPHLNKLVILNLRGSKSLKSLPSGIFNLEFLT  157 (321)
Q Consensus        78 ~l~~L~~L~l~~~~l~~~~~~~~~l~~L~~~l~l~~~~l~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~l~~l~~L~  157 (321)
                      .+++|++|++++|.+..++ ++..+++|+. ++++.|.++ .++   .+..+++|++|++++|.+ ..++ .+..+++|+
T Consensus        39 ~l~~L~~L~l~~~~i~~l~-~~~~l~~L~~-L~L~~n~i~-~~~---~~~~l~~L~~L~L~~n~l-~~~~-~~~~l~~L~  110 (308)
T 1h6u_A           39 DLDGITTLSAFGTGVTTIE-GVQYLNNLIG-LELKDNQIT-DLA---PLKNLTKITELELSGNPL-KNVS-AIAGLQSIK  110 (308)
T ss_dssp             HHHTCCEEECTTSCCCCCT-TGGGCTTCCE-EECCSSCCC-CCG---GGTTCCSCCEEECCSCCC-SCCG-GGTTCTTCC
T ss_pred             HcCCcCEEEeeCCCccCch-hhhccCCCCE-EEccCCcCC-CCh---hHccCCCCCEEEccCCcC-CCch-hhcCCCCCC
Confidence            4556666666666665543 4555566666 666666665 443   255566666666666653 2333 255566666


Q ss_pred             EEecCCCCCccccccc-ccCCccEEEeccccccccChhhhccCCCCeEecccCcccccccccccCCCCCCEEEecCCCCC
Q 037308          158 KLDLSGCSKLKRLLEI-SSGNINWLFLRETAIEELPSSIERLLRLGHLDLSDCKRLKSLPSSLFKLKSLGVLNLGGCSNL  236 (321)
Q Consensus       158 ~L~l~~~~~~~~~~~~-~~~~L~~L~l~~~~i~~l~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~~~~~  236 (321)
                      +|++++|.... ++.. .+++|++|++++|.+++++. +..+++|++|++++|.+.+..+  +..+++|+.|++++|.+.
T Consensus       111 ~L~l~~n~l~~-~~~l~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~l~  186 (308)
T 1h6u_A          111 TLDLTSTQITD-VTPLAGLSNLQVLYLDLNQITNISP-LAGLTNLQYLSIGNAQVSDLTP--LANLSKLTTLKADDNKIS  186 (308)
T ss_dssp             EEECTTSCCCC-CGGGTTCTTCCEEECCSSCCCCCGG-GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCC
T ss_pred             EEECCCCCCCC-chhhcCCCCCCEEECCCCccCcCcc-ccCCCCccEEEccCCcCCCChh--hcCCCCCCEEECCCCccC
Confidence            66666654322 2222 35566666666666665554 5555666666666665444222  556666666666665554


Q ss_pred             CccccccCCCCCCcEEEcccCCCcccchhhhccCCcCEEeccCCCCccccc
Q 037308          237 QRLPECLGQLSSPIILNLAKTNVERIPESIIQLFVLRYLLLSYSERIQSVS  287 (321)
Q Consensus       237 ~~~~~~~~~~~~L~~L~l~~n~l~~l~~~l~~l~~L~~L~l~~n~~l~~~~  287 (321)
                      +..+  +..+++|+.|++++|+++.++. +..+++|++|++++| .++..|
T Consensus       187 ~~~~--l~~l~~L~~L~L~~N~l~~~~~-l~~l~~L~~L~l~~N-~i~~~~  233 (308)
T 1h6u_A          187 DISP--LASLPNLIEVHLKNNQISDVSP-LANTSNLFIVTLTNQ-TITNQP  233 (308)
T ss_dssp             CCGG--GGGCTTCCEEECTTSCCCBCGG-GTTCTTCCEEEEEEE-EEECCC
T ss_pred             cChh--hcCCCCCCEEEccCCccCcccc-ccCCCCCCEEEccCC-eeecCC
Confidence            3322  5556666666666666665552 555666666666666 444433

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=99.85  E-value=1.3e-20  Score=162.57  Aligned_cols=198  Identities=20%  Similarity=0.158  Sum_probs=103.6

Q ss_pred             CcccEEEecCCCCCCCCCcCCcCceeEEeccCCcccccccCCCCCCChHhHHhhccccccccCCCCCCCCCCCCccEEEc
Q 037308           58 AEVKYFHWHGYPLKSLPSNLSAEKLVFLKVPYSDIEQLWNGEKHYSNLNQIINATCNKLIAKTPNPTLMPHLNKLVILNL  137 (321)
Q Consensus        58 ~~L~~l~l~~~~l~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~l~~L~~~l~l~~~~l~~~~~~~~~~~~l~~L~~L~l  137 (321)
                      ++|+.+++.++.+..++....+++|++|++++|.+..+ ..+..+++|+. ++++.|.++ .++. ..+..+++|++|++
T Consensus        41 ~~L~~L~l~~~~i~~~~~l~~l~~L~~L~l~~n~l~~~-~~l~~l~~L~~-L~L~~n~l~-~~~~-~~~~~l~~L~~L~L  116 (272)
T 3rfs_A           41 NSIDQIIANNSDIKSVQGIQYLPNVRYLALGGNKLHDI-SALKELTNLTY-LILTGNQLQ-SLPN-GVFDKLTNLKELVL  116 (272)
T ss_dssp             TTCCEEECTTSCCCCCTTGGGCTTCCEEECTTSCCCCC-GGGTTCTTCCE-EECTTSCCC-CCCT-TTTTTCTTCCEEEC
T ss_pred             cceeeeeeCCCCcccccccccCCCCcEEECCCCCCCCc-hhhcCCCCCCE-EECCCCccC-ccCh-hHhcCCcCCCEEEC
Confidence            56666666666665555444566666666666665543 23444444444 555555544 2221 13455555555555


Q ss_pred             cCCCCCcccCccccCcccCcEEecCCCCCcccccccccCCccEEEeccccccccChh-hhccCCCCeEecccCccccccc
Q 037308          138 RGSKSLKSLPSGIFNLEFLTKLDLSGCSKLKRLLEISSGNINWLFLRETAIEELPSS-IERLLRLGHLDLSDCKRLKSLP  216 (321)
Q Consensus       138 ~~n~~~~~~p~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~i~~l~~~-~~~l~~L~~L~l~~n~~~~~~~  216 (321)
                      ++|.+.+..+..+..+++|++|++++                      |.+++++.. +..+++|++|++++|.+.+..+
T Consensus       117 ~~n~l~~~~~~~~~~l~~L~~L~L~~----------------------n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~  174 (272)
T 3rfs_A          117 VENQLQSLPDGVFDKLTNLTYLNLAH----------------------NQLQSLPKGVFDKLTNLTELDLSYNQLQSLPE  174 (272)
T ss_dssp             TTSCCCCCCTTTTTTCTTCCEEECCS----------------------SCCCCCCTTTTTTCTTCCEEECCSSCCCCCCT
T ss_pred             CCCcCCccCHHHhccCCCCCEEECCC----------------------CccCccCHHHhccCccCCEEECCCCCcCccCH
Confidence            55554433333344455555555554                      444444432 3455566666666665554444


Q ss_pred             ccccCCCCCCEEEecCCCCCCccccccCCCCCCcEEEcccCCCcccchhhhccCCcCEEeccCCCCccccc
Q 037308          217 SSLFKLKSLGVLNLGGCSNLQRLPECLGQLSSPIILNLAKTNVERIPESIIQLFVLRYLLLSYSERIQSVS  287 (321)
Q Consensus       217 ~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~l~~~l~~l~~L~~L~l~~n~~l~~~~  287 (321)
                      ..++.+++|+.|++++|.+.+..+..+..+++|+.|++++|.+.      +.++.++.++++.|..-..+|
T Consensus       175 ~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~------~~~~~l~~l~~~~n~~~g~ip  239 (272)
T 3rfs_A          175 GVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWD------CTCPGIRYLSEWINKHSGVVR  239 (272)
T ss_dssp             TTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBC------CCTTTTHHHHHHHHHTGGGBB
T ss_pred             HHhcCCccCCEEECCCCcCCccCHHHHhCCcCCCEEEccCCCcc------ccCcHHHHHHHHHHhCCCccc
Confidence            44555666666666666555555445555666666666666544      223445555555553333433

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=99.85  E-value=5.9e-21  Score=167.88  Aligned_cols=221  Identities=19%  Similarity=0.090  Sum_probs=170.8

Q ss_pred             CcccEEEecCCCCCC-----CCCcCCcCceeEEeccCCcccccc-cCC--CCCCChHhHHhhccccccccCCC--CCCCC
Q 037308           58 AEVKYFHWHGYPLKS-----LPSNLSAEKLVFLKVPYSDIEQLW-NGE--KHYSNLNQIINATCNKLIAKTPN--PTLMP  127 (321)
Q Consensus        58 ~~L~~l~l~~~~l~~-----~~~~~~l~~L~~L~l~~~~l~~~~-~~~--~~l~~L~~~l~l~~~~l~~~~~~--~~~~~  127 (321)
                      ..++.+.+.++.+..     +......++|++|++++|.+.... ..+  ..+++|+. ++++.|.+.+..+.  ...+.
T Consensus        64 ~~l~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~-L~Ls~n~i~~~~~~~~~~~~~  142 (310)
T 4glp_A           64 LRVRRLTVGAAQVPAQLLVGALRVLAYSRLKELTLEDLKITGTMPPLPLEATGLALSS-LRLRNVSWATGRSWLAELQQW  142 (310)
T ss_dssp             CCCCEEEECSCCCBHHHHHHHHHHHHHSCCCEEEEESCCCBSCCCCCSSSCCCBCCSS-CEEESCCCSSTTSSHHHHHTT
T ss_pred             cceeEEEEeCCcCCHHHHHHHHHhcccCceeEEEeeCCEeccchhhhhhhccCCCCCE-EEeecccccchhhhhHHHHhh
Confidence            567778887766532     111225677999999999987653 344  77888998 99999998843331  01345


Q ss_pred             CCCCccEEEccCCCCCcccCccccCcccCcEEecCCCCCccc--cc--c--cccCCccEEEeccccccccChh----hhc
Q 037308          128 HLNKLVILNLRGSKSLKSLPSGIFNLEFLTKLDLSGCSKLKR--LL--E--ISSGNINWLFLRETAIEELPSS----IER  197 (321)
Q Consensus       128 ~l~~L~~L~l~~n~~~~~~p~~l~~l~~L~~L~l~~~~~~~~--~~--~--~~~~~L~~L~l~~~~i~~l~~~----~~~  197 (321)
                      .+++|++|++++|.+.+..|..++.+++|++|++++|...+.  ++  .  ..+++|++|++++|.++.++..    +..
T Consensus       143 ~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~~  222 (310)
T 4glp_A          143 LKPGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMETPTGVCAALAAA  222 (310)
T ss_dssp             BCSCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCHHHHHHHHHHH
T ss_pred             hccCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCchHHHHHHHHhc
Confidence            789999999999997666677889999999999999875432  21  1  1477899999999999876642    467


Q ss_pred             cCCCCeEecccCcccccccccccCC---CCCCEEEecCCCCCCccccccCCCCCCcEEEcccCCCcccchhhhccCCcCE
Q 037308          198 LLRLGHLDLSDCKRLKSLPSSLFKL---KSLGVLNLGGCSNLQRLPECLGQLSSPIILNLAKTNVERIPESIIQLFVLRY  274 (321)
Q Consensus       198 l~~L~~L~l~~n~~~~~~~~~~~~l---~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~l~~~l~~l~~L~~  274 (321)
                      +++|++|++++|.+.+..|..+..+   ++|+.|++++|.+. .+|..+.  ++|+.|++++|+++.+|. +..+++|++
T Consensus       223 l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~-~lp~~~~--~~L~~L~Ls~N~l~~~~~-~~~l~~L~~  298 (310)
T 4glp_A          223 GVQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLE-QVPKGLP--AKLRVLDLSSNRLNRAPQ-PDELPEVDN  298 (310)
T ss_dssp             TCCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCCC-SCCSCCC--SCCSCEECCSCCCCSCCC-TTSCCCCSC
T ss_pred             CCCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCCCCC-chhhhhc--CCCCEEECCCCcCCCCch-hhhCCCccE
Confidence            8999999999999888777766666   69999999998877 6677664  799999999999998875 678899999


Q ss_pred             EeccCCCCcc
Q 037308          275 LLLSYSERIQ  284 (321)
Q Consensus       275 L~l~~n~~l~  284 (321)
                      |++++| .++
T Consensus       299 L~L~~N-~l~  307 (310)
T 4glp_A          299 LTLDGN-PFL  307 (310)
T ss_dssp             EECSST-TTS
T ss_pred             EECcCC-CCC
Confidence            999999 544

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=99.84  E-value=3.3e-20  Score=160.32  Aligned_cols=199  Identities=20%  Similarity=0.134  Sum_probs=139.4

Q ss_pred             CcccEEEecCCCCCCCCC-cC-CcCceeEEeccCCccccccc-CCCCCCChHhHHhhccccccccCCCCCCCCCCCCccE
Q 037308           58 AEVKYFHWHGYPLKSLPS-NL-SAEKLVFLKVPYSDIEQLWN-GEKHYSNLNQIINATCNKLIAKTPNPTLMPHLNKLVI  134 (321)
Q Consensus        58 ~~L~~l~l~~~~l~~~~~-~~-~l~~L~~L~l~~~~l~~~~~-~~~~l~~L~~~l~l~~~~l~~~~~~~~~~~~l~~L~~  134 (321)
                      ++|++|++++|.+..++. .+ .+++|++|++++|.++.++. .+..+++|+. ++++.|.+++..+.  .+..+++|++
T Consensus        28 ~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~-L~L~~n~l~~~~~~--~~~~l~~L~~  104 (276)
T 2z62_A           28 FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLST-LILTGNPIQSLALG--AFSGLSSLQK  104 (276)
T ss_dssp             TTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCE-EECTTCCCCEECTT--TTTTCTTCCE
T ss_pred             CCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCE-EECCCCccCccChh--hhcCCccccE
Confidence            456777777776666554 22 56777777777777666544 4566666777 77777777633333  6777788888


Q ss_pred             EEccCCCCCcccCccccCcccCcEEecCCCCCcc-ccccc--ccCCccEEEeccccccccC-hhhhccCCCC----eEec
Q 037308          135 LNLRGSKSLKSLPSGIFNLEFLTKLDLSGCSKLK-RLLEI--SSGNINWLFLRETAIEELP-SSIERLLRLG----HLDL  206 (321)
Q Consensus       135 L~l~~n~~~~~~p~~l~~l~~L~~L~l~~~~~~~-~~~~~--~~~~L~~L~l~~~~i~~l~-~~~~~l~~L~----~L~l  206 (321)
                      |++++|.+.+..+..+..+++|++|++++|.... .+|..  .+++|++|++++|.+++++ ..+..+++|+    .|++
T Consensus       105 L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~l~l~L~l  184 (276)
T 2z62_A          105 LVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDL  184 (276)
T ss_dssp             EECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCEEEEC
T ss_pred             EECCCCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCcCCHHHhhhhhhccccceeeec
Confidence            8888877554444457777888888888765433 23332  4677888888888888866 3466666666    8999


Q ss_pred             ccCcccccccccccCCCCCCEEEecCCCCCCccccccCCCCCCcEEEcccCCCc
Q 037308          207 SDCKRLKSLPSSLFKLKSLGVLNLGGCSNLQRLPECLGQLSSPIILNLAKTNVE  260 (321)
Q Consensus       207 ~~n~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~  260 (321)
                      ++|.+.+..+..+ ...+|+.|++++|.+.+..+..+..+++|+.|++++|.++
T Consensus       185 s~n~l~~~~~~~~-~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~  237 (276)
T 2z62_A          185 SLNPMNFIQPGAF-KEIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWD  237 (276)
T ss_dssp             CSSCCCEECTTSS-CSCCEEEEECCSSCCSCCCTTTTTTCCSCCEEECCSSCBC
T ss_pred             CCCcccccCcccc-CCCcccEEECCCCceeecCHhHhcccccccEEEccCCccc
Confidence            9998776554444 4458999999999877666666788999999999999988

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=99.84  E-value=6.8e-21  Score=161.18  Aligned_cols=204  Identities=17%  Similarity=0.209  Sum_probs=116.2

Q ss_pred             CCCCCCcCCcCceeEEeccCCccccccc-CCCCCCChHhHHhhcccc-ccccCCCCCCCCCCCCccEEEccC-CCCCccc
Q 037308           70 LKSLPSNLSAEKLVFLKVPYSDIEQLWN-GEKHYSNLNQIINATCNK-LIAKTPNPTLMPHLNKLVILNLRG-SKSLKSL  146 (321)
Q Consensus        70 l~~~~~~~~l~~L~~L~l~~~~l~~~~~-~~~~l~~L~~~l~l~~~~-l~~~~~~~~~~~~l~~L~~L~l~~-n~~~~~~  146 (321)
                      ++.+|.  -.+++++|++++|+++.++. .+..+++|+. ++++.|. ++ .++. ..|.++++|++|++++ |.+....
T Consensus        23 l~~ip~--~~~~l~~L~l~~n~l~~i~~~~~~~l~~L~~-L~l~~n~~l~-~i~~-~~f~~l~~L~~L~l~~~n~l~~i~   97 (239)
T 2xwt_C           23 IQRIPS--LPPSTQTLKLIETHLRTIPSHAFSNLPNISR-IYVSIDVTLQ-QLES-HSFYNLSKVTHIEIRNTRNLTYID   97 (239)
T ss_dssp             CSSCCC--CCTTCCEEEEESCCCSEECTTTTTTCTTCCE-EEEECCSSCC-EECT-TTEESCTTCCEEEEEEETTCCEEC
T ss_pred             ccccCC--CCCcccEEEEeCCcceEECHHHccCCCCCcE-EeCCCCCCcc-eeCH-hHcCCCcCCcEEECCCCCCeeEcC
Confidence            444544  23355666666666555443 3344455555 5555553 44 3321 1345555666666655 4433322


Q ss_pred             CccccCcccCcEEecCCCCCccccccc-ccCCcc---EEEeccc-cccccCh-hhhccCCCC-eEecccCcccccccccc
Q 037308          147 PSGIFNLEFLTKLDLSGCSKLKRLLEI-SSGNIN---WLFLRET-AIEELPS-SIERLLRLG-HLDLSDCKRLKSLPSSL  219 (321)
Q Consensus       147 p~~l~~l~~L~~L~l~~~~~~~~~~~~-~~~~L~---~L~l~~~-~i~~l~~-~~~~l~~L~-~L~l~~n~~~~~~~~~~  219 (321)
                      +..|..+++|++|++++|.. +.+|.. .+++|+   +|++++| .++.++. .+..+++|+ +|++++|.+. .+|...
T Consensus        98 ~~~f~~l~~L~~L~l~~n~l-~~lp~~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~-~i~~~~  175 (239)
T 2xwt_C           98 PDALKELPLLKFLGIFNTGL-KMFPDLTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFT-SVQGYA  175 (239)
T ss_dssp             TTSEECCTTCCEEEEEEECC-CSCCCCTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCC-EECTTT
T ss_pred             HHHhCCCCCCCEEeCCCCCC-ccccccccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCc-ccCHhh
Confidence            33455555566665555432 223321 234444   6666666 6666664 366777777 8888877766 344333


Q ss_pred             cCCCCCCEEEecCCC-CCCccccccCCC-CCCcEEEcccCCCcccchhhhccCCcCEEeccCCCC
Q 037308          220 FKLKSLGVLNLGGCS-NLQRLPECLGQL-SSPIILNLAKTNVERIPESIIQLFVLRYLLLSYSER  282 (321)
Q Consensus       220 ~~l~~L~~L~l~~~~-~~~~~~~~~~~~-~~L~~L~l~~n~l~~l~~~l~~l~~L~~L~l~~n~~  282 (321)
                      ...++|+.|++++|. +.+..+..+..+ ++|+.|++++|+++.+|..  .+++|++|+++++..
T Consensus       176 ~~~~~L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~~l~~~--~~~~L~~L~l~~~~~  238 (239)
T 2xwt_C          176 FNGTKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVTALPSK--GLEHLKELIARNTWT  238 (239)
T ss_dssp             TTTCEEEEEECTTCTTCCEECTTTTTTCSBCCSEEECTTCCCCCCCCT--TCTTCSEEECTTC--
T ss_pred             cCCCCCCEEEcCCCCCcccCCHHHhhccccCCcEEECCCCccccCChh--HhccCceeeccCccC
Confidence            333778888888774 554445567777 7888888888888877753  567777887777643

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I

Probab=99.84  E-value=1.5e-23  Score=194.16  Aligned_cols=274  Identities=15%  Similarity=0.082  Sum_probs=138.2

Q ss_pred             hcCCCCceEEEEeecCCCCccccceeccCCCCc-CcccEEEecCCCCCCCCC--cC-CcC----ceeEEeccCCcccc--
Q 037308           25 FTKMPKLRFLKFYSSSFNGENKCKVSYLQDPRF-AEVKYFHWHGYPLKSLPS--NL-SAE----KLVFLKVPYSDIEQ--   94 (321)
Q Consensus        25 l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~l~~-~~L~~l~l~~~~l~~~~~--~~-~l~----~L~~L~l~~~~l~~--   94 (321)
                      +..+++|++|++++|.+++...  ...+..+.. ++|++|++++|.+.....  .. .++    +|++|++++|.++.  
T Consensus        24 ~~~~~~L~~L~L~~~~l~~~~~--~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~  101 (461)
T 1z7x_W           24 LPLLQQCQVVRLDDCGLTEARC--KDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAG  101 (461)
T ss_dssp             HHHHTTCSEEEEESSCCCHHHH--HHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCSTTCCCCEEECTTSCCBGGG
T ss_pred             HhhcCCccEEEccCCCCCHHHH--HHHHHHHHhCCCcCEEeCCCCcCChHHHHHHHHHHhhCCCceeEEEccCCCCCHHH
Confidence            5667777777777776442211  112223333 677777777776543111  11 233    57777777777662  


Q ss_pred             ---cccCCCCCCChHhHHhhccccccccCCC---CCCCCCCCCccEEEccCCCCCcc----cCccccCcccCcEEecCCC
Q 037308           95 ---LWNGEKHYSNLNQIINATCNKLIAKTPN---PTLMPHLNKLVILNLRGSKSLKS----LPSGIFNLEFLTKLDLSGC  164 (321)
Q Consensus        95 ---~~~~~~~l~~L~~~l~l~~~~l~~~~~~---~~~~~~l~~L~~L~l~~n~~~~~----~p~~l~~l~~L~~L~l~~~  164 (321)
                         ++..+..+++|++ +++++|.+.+..+.   .......++|++|++++|.+...    ++..+..+++|++|++++|
T Consensus       102 ~~~l~~~l~~~~~L~~-L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n  180 (461)
T 1z7x_W          102 CGVLSSTLRTLPTLQE-LHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNN  180 (461)
T ss_dssp             HHHHHHHTTSCTTCCE-EECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCTTCCEEECCSS
T ss_pred             HHHHHHHHccCCceeE-EECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHHHHHHHhhCCCCCEEECcCC
Confidence               3455566667777 77776666521110   00122244677777777664432    2333445566666666665


Q ss_pred             CCccccccc-------ccCCccEEEeccccccc-----cChhhhccCCCCeEecccCcccccc-----cccccCCCCCCE
Q 037308          165 SKLKRLLEI-------SSGNINWLFLRETAIEE-----LPSSIERLLRLGHLDLSDCKRLKSL-----PSSLFKLKSLGV  227 (321)
Q Consensus       165 ~~~~~~~~~-------~~~~L~~L~l~~~~i~~-----l~~~~~~l~~L~~L~l~~n~~~~~~-----~~~~~~l~~L~~  227 (321)
                      ......+..       ..++|++|++++|.++.     ++..+..+++|++|++++|.+.+..     +.....+++|+.
T Consensus       181 ~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~~~~L~~  260 (461)
T 1z7x_W          181 DINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRT  260 (461)
T ss_dssp             BCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCE
T ss_pred             CcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCcCChHHHHHHHHHHhcCCCCceE
Confidence            432211111       13356666666665554     3444455555666666555543321     111123445555


Q ss_pred             EEecCCCCCCc----cccccCCCC-----------------------------CCcEEEcccCCCcc-----cchhhhcc
Q 037308          228 LNLGGCSNLQR----LPECLGQLS-----------------------------SPIILNLAKTNVER-----IPESIIQL  269 (321)
Q Consensus       228 L~l~~~~~~~~----~~~~~~~~~-----------------------------~L~~L~l~~n~l~~-----l~~~l~~l  269 (321)
                      |++++|.+...    ++..+..++                             +|+.|++++|.++.     ++..+..+
T Consensus       261 L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~  340 (461)
T 1z7x_W          261 LWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQN  340 (461)
T ss_dssp             EECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHC
T ss_pred             EECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCCCchHHHHHHHHHhccCCccceeeEcCCCCCchHHHHHHHHHHhhC
Confidence            55555444332    233333344                             45555555555442     33444555


Q ss_pred             CCcCEEeccCCCCccccc---C-------ccccccccccccCc
Q 037308          270 FVLRYLLLSYSERIQSVS---L-------PLARGILEDTQRSP  302 (321)
Q Consensus       270 ~~L~~L~l~~n~~l~~~~---~-------~~~l~~l~~~~~~~  302 (321)
                      ++|++|++++| .+++..   +       .++++.|++.++.-
T Consensus       341 ~~L~~L~Ls~n-~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~i  382 (461)
T 1z7x_W          341 RFLLELQISNN-RLEDAGVRELCQGLGQPGSVLRVLWLADCDV  382 (461)
T ss_dssp             SSCCEEECCSS-BCHHHHHHHHHHHHTSTTCCCCEEECTTSCC
T ss_pred             CCccEEEccCC-ccccccHHHHHHHHcCCCCceEEEECCCCCC
Confidence            66666666666 454432   1       23666666666543

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I

Probab=99.84  E-value=3.6e-23  Score=191.66  Aligned_cols=233  Identities=17%  Similarity=0.120  Sum_probs=116.7

Q ss_pred             hhhcCCCCceEEEEeecCCCCccccceeccCCCCc--CcccEEEecCCCCCC-----CCCcC-CcCceeEEeccCCcccc
Q 037308           23 STFTKMPKLRFLKFYSSSFNGENKCKVSYLQDPRF--AEVKYFHWHGYPLKS-----LPSNL-SAEKLVFLKVPYSDIEQ   94 (321)
Q Consensus        23 ~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~l~~--~~L~~l~l~~~~l~~-----~~~~~-~l~~L~~L~l~~~~l~~   94 (321)
                      ..+..+++|++|++++|.+++..+.  .....+..  ++|++|++++|.+..     ++..+ .+++|++|++++|.+..
T Consensus        50 ~~l~~~~~L~~L~Ls~n~l~~~~~~--~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~  127 (461)
T 1z7x_W           50 SALRVNPALAELNLRSNELGDVGVH--CVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGD  127 (461)
T ss_dssp             HHHHTCTTCCEEECTTCCCHHHHHH--HHHHTTCSTTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHH
T ss_pred             HHHHhCCCcCEEeCCCCcCChHHHH--HHHHHHhhCCCceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCch
Confidence            4566677888888887765432111  11112222  257777777776552     23333 56666666666666543


Q ss_pred             c----------------------------------ccCCCCCCChHhHHhhccccccccCCCCCCCC-----CCCCccEE
Q 037308           95 L----------------------------------WNGEKHYSNLNQIINATCNKLIAKTPNPTLMP-----HLNKLVIL  135 (321)
Q Consensus        95 ~----------------------------------~~~~~~l~~L~~~l~l~~~~l~~~~~~~~~~~-----~l~~L~~L  135 (321)
                      .                                  ...+..+++|++ ++++.|.+.+....  .+.     ..++|++|
T Consensus       128 ~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~-L~L~~n~i~~~~~~--~l~~~l~~~~~~L~~L  204 (461)
T 1z7x_W          128 AGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKE-LTVSNNDINEAGVR--VLCQGLKDSPCQLEAL  204 (461)
T ss_dssp             HHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCTTCCE-EECCSSBCHHHHHH--HHHHHHHHSCCCCCEE
T ss_pred             HHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHHHHHHHhhCCCCCE-EECcCCCcchHHHH--HHHHHHhcCCCCceEE
Confidence            1                                  111122333444 44444444311110  111     13356666


Q ss_pred             EccCCCCCcc----cCccccCcccCcEEecCCCCCccc----cccc---ccCCccEEEeccccccc-----cChhhhccC
Q 037308          136 NLRGSKSLKS----LPSGIFNLEFLTKLDLSGCSKLKR----LLEI---SSGNINWLFLRETAIEE-----LPSSIERLL  199 (321)
Q Consensus       136 ~l~~n~~~~~----~p~~l~~l~~L~~L~l~~~~~~~~----~~~~---~~~~L~~L~l~~~~i~~-----l~~~~~~l~  199 (321)
                      ++++|.+...    ++..+..+++|++|++++|.....    +...   .+++|++|++++|.++.     ++..+..++
T Consensus       205 ~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~  284 (461)
T 1z7x_W          205 KLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKE  284 (461)
T ss_dssp             ECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCT
T ss_pred             EccCCCCcHHHHHHHHHHHHhCCCccEEeccCCcCChHHHHHHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHHHhhCC
Confidence            6666553331    344455567777777777643221    1111   25677777777777775     555566677


Q ss_pred             CCCeEecccCccccccccccc-----CCCCCCEEEecCCCCCCc----cccccCCCCCCcEEEcccCCCc
Q 037308          200 RLGHLDLSDCKRLKSLPSSLF-----KLKSLGVLNLGGCSNLQR----LPECLGQLSSPIILNLAKTNVE  260 (321)
Q Consensus       200 ~L~~L~l~~n~~~~~~~~~~~-----~l~~L~~L~l~~~~~~~~----~~~~~~~~~~L~~L~l~~n~l~  260 (321)
                      +|++|++++|.+.+..+..+.     ..++|+.|++++|.+.+.    ++..+..+++|+.|++++|.++
T Consensus       285 ~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~  354 (461)
T 1z7x_W          285 SLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLE  354 (461)
T ss_dssp             TCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCH
T ss_pred             CcceEECCCCCCchHHHHHHHHHhccCCccceeeEcCCCCCchHHHHHHHHHHhhCCCccEEEccCCccc
Confidence            777777777765443222221     123555555555554432    2333334445555555555444

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=99.83  E-value=2.3e-20  Score=161.06  Aligned_cols=200  Identities=19%  Similarity=0.181  Sum_probs=137.0

Q ss_pred             CcccEEEecCCCCCCCCCcCCcCceeEEeccCCcccccccCCCCCCChHhHHhhccccccccCCCCCCCCCCCCccEEEc
Q 037308           58 AEVKYFHWHGYPLKSLPSNLSAEKLVFLKVPYSDIEQLWNGEKHYSNLNQIINATCNKLIAKTPNPTLMPHLNKLVILNL  137 (321)
Q Consensus        58 ~~L~~l~l~~~~l~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~l~~L~~~l~l~~~~l~~~~~~~~~~~~l~~L~~L~l  137 (321)
                      .++..+.+.++.+..+.....+++|+.|+++++.++.+ .++..+++|+. +++++|.+. .++   .+..+++|++|++
T Consensus        19 ~~l~~l~l~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~-~~l~~l~~L~~-L~l~~n~l~-~~~---~l~~l~~L~~L~L   92 (272)
T 3rfs_A           19 AETIKANLKKKSVTDAVTQNELNSIDQIIANNSDIKSV-QGIQYLPNVRY-LALGGNKLH-DIS---ALKELTNLTYLIL   92 (272)
T ss_dssp             HHHHHHHHTCSCTTSEECHHHHTTCCEEECTTSCCCCC-TTGGGCTTCCE-EECTTSCCC-CCG---GGTTCTTCCEEEC
T ss_pred             HHHHHHHhcCcccccccccccccceeeeeeCCCCcccc-cccccCCCCcE-EECCCCCCC-Cch---hhcCCCCCCEEEC
Confidence            44455555555555444434677788888877777653 23344444444 444444444 222   3444444444444


Q ss_pred             cCCCCCcccCccccCcccCcEEecCCCCCcccccccccCCccEEEeccccccccChh-hhccCCCCeEecccCccccccc
Q 037308          138 RGSKSLKSLPSGIFNLEFLTKLDLSGCSKLKRLLEISSGNINWLFLRETAIEELPSS-IERLLRLGHLDLSDCKRLKSLP  216 (321)
Q Consensus       138 ~~n~~~~~~p~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~i~~l~~~-~~~l~~L~~L~l~~n~~~~~~~  216 (321)
                      ++|.+.+..+..+..                      +++|++|++++|.+++++.. +..+++|++|++++|.+.+..+
T Consensus        93 ~~n~l~~~~~~~~~~----------------------l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~  150 (272)
T 3rfs_A           93 TGNQLQSLPNGVFDK----------------------LTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPK  150 (272)
T ss_dssp             TTSCCCCCCTTTTTT----------------------CTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCT
T ss_pred             CCCccCccChhHhcC----------------------CcCCCEEECCCCcCCccCHHHhccCCCCCEEECCCCccCccCH
Confidence            444433222222333                      45566666666667776644 6889999999999999887777


Q ss_pred             ccccCCCCCCEEEecCCCCCCccccccCCCCCCcEEEcccCCCcccch-hhhccCCcCEEeccCCCCccc
Q 037308          217 SSLFKLKSLGVLNLGGCSNLQRLPECLGQLSSPIILNLAKTNVERIPE-SIIQLFVLRYLLLSYSERIQS  285 (321)
Q Consensus       217 ~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~l~~-~l~~l~~L~~L~l~~n~~l~~  285 (321)
                      ..++.+++|+.|++++|.+.+..+..++.+++|+.|++++|.++.++. .+..+++|++|++++|+....
T Consensus       151 ~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~  220 (272)
T 3rfs_A          151 GVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDCT  220 (272)
T ss_dssp             TTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCC
T ss_pred             HHhccCccCCEEECCCCCcCccCHHHhcCCccCCEEECCCCcCCccCHHHHhCCcCCCEEEccCCCcccc
Confidence            778999999999999999887777778999999999999999997775 578899999999999965554

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=99.83  E-value=3.3e-19  Score=171.04  Aligned_cols=250  Identities=18%  Similarity=0.193  Sum_probs=182.3

Q ss_pred             hcCCCCceEEEEeecCCCCccccceeccCCCCcCcccEEEecCCCCCCCCCcCCcCceeEEeccCCccccc---ccCCCC
Q 037308           25 FTKMPKLRFLKFYSSSFNGENKCKVSYLQDPRFAEVKYFHWHGYPLKSLPSNLSAEKLVFLKVPYSDIEQL---WNGEKH  101 (321)
Q Consensus        25 l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~l~~~~L~~l~l~~~~l~~~~~~~~l~~L~~L~l~~~~l~~~---~~~~~~  101 (321)
                      +....+++.|++.+|.+.+.        .......|+.+.+..+.....+....+++|+.+++++|.+...   +.....
T Consensus       324 ~~~~~~L~~L~l~~~~~~~~--------~~~~l~~L~~l~l~~n~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~  395 (635)
T 4g8a_A          324 FSYNFGWQHLELVNCKFGQF--------PTLKLKSLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFG  395 (635)
T ss_dssp             GGSCCCCSEEEEESCEESSC--------CCCBCTTCCEEEEESCCSCCBCCCCBCTTCCEEECCSSCCBEEEECCHHHHS
T ss_pred             cccchhhhhhhcccccccCc--------CcccchhhhhcccccccCCCCcccccccccccchhhccccccccccccchhh
Confidence            44556777788777653211        1122267788888877776666666788899999988887643   223345


Q ss_pred             CCChHhHHhhccccccccCCCCCCCCCCCCccEEEccCCCCCcccC-ccccCcccCcEEecCCCCCccccccc--ccCCc
Q 037308          102 YSNLNQIINATCNKLIAKTPNPTLMPHLNKLVILNLRGSKSLKSLP-SGIFNLEFLTKLDLSGCSKLKRLLEI--SSGNI  178 (321)
Q Consensus       102 l~~L~~~l~l~~~~l~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p-~~l~~l~~L~~L~l~~~~~~~~~~~~--~~~~L  178 (321)
                      ..+++. +++..+.+. ..+.  .+..+++|+.++++.+......+ ..+..+++++.++++.|......+..  .++++
T Consensus       396 ~~~L~~-L~~~~~~~~-~~~~--~~~~l~~L~~l~l~~~~~~~~~~~~~~~~l~~l~~l~ls~n~l~~~~~~~~~~~~~L  471 (635)
T 4g8a_A          396 TISLKY-LDLSFNGVI-TMSS--NFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSL  471 (635)
T ss_dssp             CSCCCE-EECCSCSEE-EECS--CCTTCTTCCEEECTTSEEESTTSSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTC
T ss_pred             hhhhhh-hhccccccc-cccc--cccccccccchhhhhccccccccccccccccccccccccccccccccccccccchhh
Confidence            666666 777777766 4544  67788889999888876544433 34677888888888887654433332  46788


Q ss_pred             cEEEeccccccc--cChhhhccCCCCeEecccCcccccccccccCCCCCCEEEecCCCCCCccccccCCCCCCcEEEccc
Q 037308          179 NWLFLRETAIEE--LPSSIERLLRLGHLDLSDCKRLKSLPSSLFKLKSLGVLNLGGCSNLQRLPECLGQLSSPIILNLAK  256 (321)
Q Consensus       179 ~~L~l~~~~i~~--l~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~  256 (321)
                      +.|++++|.+..  .|..+..+++|++|++++|.+.+..|..++++++|+.|++++|++.+..+..+.++++|+.|++++
T Consensus       472 ~~L~Ls~N~~~~~~~~~~~~~l~~L~~L~Ls~N~L~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~  551 (635)
T 4g8a_A          472 EVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSL  551 (635)
T ss_dssp             CEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCBCCCGGGTTCTTCCEEECTT
T ss_pred             hhhhhhhcccccccCchhhhhccccCEEECCCCccCCcChHHHcCCCCCCEEECCCCcCCCCChhHHhCCCCCCEEECCC
Confidence            889998886543  556678888899999999888888888888899999999999888887777888889999999999


Q ss_pred             CCCcccc-hhhhcc-CCcCEEeccCCCCcccc
Q 037308          257 TNVERIP-ESIIQL-FVLRYLLLSYSERIQSV  286 (321)
Q Consensus       257 n~l~~l~-~~l~~l-~~L~~L~l~~n~~l~~~  286 (321)
                      |+++.++ ..+..+ ++|++|++++|+.-.+.
T Consensus       552 N~l~~~~~~~l~~l~~~L~~L~L~~Np~~C~C  583 (635)
T 4g8a_A          552 NHIMTSKKQELQHFPSSLAFLNLTQNDFACTC  583 (635)
T ss_dssp             SCCCBCCSSCTTCCCTTCCEEECTTCCBCCSG
T ss_pred             CcCCCCCHHHHHhhhCcCCEEEeeCCCCcccC
Confidence            9988655 566776 58999999988665543

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=99.83  E-value=5e-22  Score=180.03  Aligned_cols=242  Identities=14%  Similarity=0.106  Sum_probs=163.0

Q ss_pred             hccChhhhcCCCCceEEEEeecCCCCccccceeccCCCCc-CcccEEEecCCCCCCCCCc------------CCcCceeE
Q 037308           18 IRLNLSTFTKMPKLRFLKFYSSSFNGENKCKVSYLQDPRF-AEVKYFHWHGYPLKSLPSN------------LSAEKLVF   84 (321)
Q Consensus        18 ~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~l~~-~~L~~l~l~~~~l~~~~~~------------~~l~~L~~   84 (321)
                      +..-...+..+++|++|++++|.+++..+  ......+.. ++|++|++++|.+..+...            ..+++|++
T Consensus        21 ~~~l~~~l~~~~~L~~L~L~~n~i~~~~~--~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~   98 (386)
T 2ca6_A           21 EKSVFAVLLEDDSVKEIVLSGNTIGTEAA--RWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHT   98 (386)
T ss_dssp             HHTTSHHHHHCSCCCEEECTTSEECHHHH--HHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCE
T ss_pred             HHHHHHHHhcCCCccEEECCCCCCCHHHH--HHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccE
Confidence            34444667778889999998887553322  112233555 8888888888766544321            15677777


Q ss_pred             EeccCCcccccccCCCCCCChHhHHhhccccccccCCCCCCCCCCCCccEEEccCCCCCcc----cCccccCc-------
Q 037308           85 LKVPYSDIEQLWNGEKHYSNLNQIINATCNKLIAKTPNPTLMPHLNKLVILNLRGSKSLKS----LPSGIFNL-------  153 (321)
Q Consensus        85 L~l~~~~l~~~~~~~~~l~~L~~~l~l~~~~l~~~~~~~~~~~~l~~L~~L~l~~n~~~~~----~p~~l~~l-------  153 (321)
                      |++++|.+...  +.      .            .++.  .+..+++|++|++++|.+...    ++..+..+       
T Consensus        99 L~Ls~n~l~~~--~~------~------------~l~~--~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~  156 (386)
T 2ca6_A           99 VRLSDNAFGPT--AQ------E------------PLID--FLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAK  156 (386)
T ss_dssp             EECCSCCCCTT--TH------H------------HHHH--HHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             EECCCCcCCHH--HH------H------------HHHH--HHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcc
Confidence            77777776531  00      0            1222  345567788888888875432    22223333       


Q ss_pred             --ccCcEEecCCCCCc-ccccc---c--ccCCccEEEeccccccc------cChhhhccCCCCeEecccCccc----ccc
Q 037308          154 --EFLTKLDLSGCSKL-KRLLE---I--SSGNINWLFLRETAIEE------LPSSIERLLRLGHLDLSDCKRL----KSL  215 (321)
Q Consensus       154 --~~L~~L~l~~~~~~-~~~~~---~--~~~~L~~L~l~~~~i~~------l~~~~~~l~~L~~L~l~~n~~~----~~~  215 (321)
                        ++|++|++++|... ..++.   .  .+++|++|++++|.++.      ++..+..+++|++|++++|.+.    ..+
T Consensus       157 ~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l  236 (386)
T 2ca6_A          157 NAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSAL  236 (386)
T ss_dssp             TCCCCCEEECCSSCCTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHH
T ss_pred             cCCCCcEEECCCCCCCcHHHHHHHHHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHH
Confidence              78888888887654 22331   1  36688888888888872      2336778888999999998875    556


Q ss_pred             cccccCCCCCCEEEecCCCCCCc----ccccc--CCCCCCcEEEcccCCCcc-----cchhh-hccCCcCEEeccCCCCc
Q 037308          216 PSSLFKLKSLGVLNLGGCSNLQR----LPECL--GQLSSPIILNLAKTNVER-----IPESI-IQLFVLRYLLLSYSERI  283 (321)
Q Consensus       216 ~~~~~~l~~L~~L~l~~~~~~~~----~~~~~--~~~~~L~~L~l~~n~l~~-----l~~~l-~~l~~L~~L~l~~n~~l  283 (321)
                      +..+..+++|+.|++++|.+.+.    ++..+  +.+++|+.|++++|.++.     +|..+ ..+++|++|++++| .+
T Consensus       237 ~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N-~l  315 (386)
T 2ca6_A          237 AIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGN-RF  315 (386)
T ss_dssp             HHHGGGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTS-BS
T ss_pred             HHHHccCCCcCEEECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCC-cC
Confidence            77788888999999999887655    45555  348889999999999886     77776 56899999999998 44


Q ss_pred             c
Q 037308          284 Q  284 (321)
Q Consensus       284 ~  284 (321)
                      .
T Consensus       316 ~  316 (386)
T 2ca6_A          316 S  316 (386)
T ss_dssp             C
T ss_pred             C
Confidence            3

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*

Probab=99.83  E-value=6.4e-20  Score=164.03  Aligned_cols=217  Identities=18%  Similarity=0.178  Sum_probs=123.4

Q ss_pred             CcccEEEecCCCCCCCCCc-C-CcCceeEEeccCCcccc-ccc-CCCCCCChHhHHhhccccccccCCCCCCCCCCCCcc
Q 037308           58 AEVKYFHWHGYPLKSLPSN-L-SAEKLVFLKVPYSDIEQ-LWN-GEKHYSNLNQIINATCNKLIAKTPNPTLMPHLNKLV  133 (321)
Q Consensus        58 ~~L~~l~l~~~~l~~~~~~-~-~l~~L~~L~l~~~~l~~-~~~-~~~~l~~L~~~l~l~~~~l~~~~~~~~~~~~l~~L~  133 (321)
                      ++++.|++++|.++.+|.. + ++++|++|++++|++.+ ++. .+..++++.+.+.+++|.++ .++. ..|..+++|+
T Consensus        30 ~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N~l~-~l~~-~~f~~l~~L~  107 (350)
T 4ay9_X           30 RNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLL-YINP-EAFQNLPNLQ  107 (350)
T ss_dssp             TTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEETTCC-EECT-TSBCCCTTCC
T ss_pred             CCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCCccc-ccCc-hhhhhccccc
Confidence            5677777777777777754 3 67777777777777644 333 34556665552444667776 4431 2567777777


Q ss_pred             EEEccCCCCCcccCccccCcccCcEEecCCCCCccccccc----ccCCccEEEeccccccccChhhhccCCCCeEecccC
Q 037308          134 ILNLRGSKSLKSLPSGIFNLEFLTKLDLSGCSKLKRLLEI----SSGNINWLFLRETAIEELPSSIERLLRLGHLDLSDC  209 (321)
Q Consensus       134 ~L~l~~n~~~~~~p~~l~~l~~L~~L~l~~~~~~~~~~~~----~~~~L~~L~l~~~~i~~l~~~~~~l~~L~~L~l~~n  209 (321)
                      +|++++|.+....+..+....++..+++..+..+..++..    ....++.|++++|.+++++.......+|+++++.++
T Consensus       108 ~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~~i~~~~f~~~~L~~l~l~~~  187 (350)
T 4ay9_X          108 YLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIHNSAFNGTQLDELNLSDN  187 (350)
T ss_dssp             EEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCCEECTTSSTTEEEEEEECTTC
T ss_pred             cccccccccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhccccccccCCChhhccccchhHHhhccC
Confidence            7777777644333333444556666666655555544432    123455666666666666655444455666666654


Q ss_pred             ccccccc-ccccCCCCCCEEEecCCCCCCccccccCCCCCCcEEEcccC-CCcccchhhhccCCcCEEeccCC
Q 037308          210 KRLKSLP-SSLFKLKSLGVLNLGGCSNLQRLPECLGQLSSPIILNLAKT-NVERIPESIIQLFVLRYLLLSYS  280 (321)
Q Consensus       210 ~~~~~~~-~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n-~l~~l~~~l~~l~~L~~L~l~~n  280 (321)
                      +..+.+| ..++.+++|+.|++++|++.. +|.  ..+.+|+.|.+.++ .++.+| .+..+++|+.+++.++
T Consensus       188 n~l~~i~~~~f~~l~~L~~LdLs~N~l~~-lp~--~~~~~L~~L~~l~~~~l~~lP-~l~~l~~L~~l~l~~~  256 (350)
T 4ay9_X          188 NNLEELPNDVFHGASGPVILDISRTRIHS-LPS--YGLENLKKLRARSTYNLKKLP-TLEKLVALMEASLTYP  256 (350)
T ss_dssp             TTCCCCCTTTTTTEECCSEEECTTSCCCC-CCS--SSCTTCCEEECTTCTTCCCCC-CTTTCCSCCEEECSCH
T ss_pred             CcccCCCHHHhccCcccchhhcCCCCcCc-cCh--hhhccchHhhhccCCCcCcCC-CchhCcChhhCcCCCC
Confidence            4344444 345666666666666655433 222  12344555554333 345555 2555666666666543

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=99.82  E-value=3.1e-21  Score=171.37  Aligned_cols=244  Identities=20%  Similarity=0.193  Sum_probs=150.7

Q ss_pred             CceEEEEeecCCCCccccceeccCCCCcCcccEEEecCCCCCCCCCc-CCcCceeEEeccCCcccc--cccCCCCCCChH
Q 037308           30 KLRFLKFYSSSFNGENKCKVSYLQDPRFAEVKYFHWHGYPLKSLPSN-LSAEKLVFLKVPYSDIEQ--LWNGEKHYSNLN  106 (321)
Q Consensus        30 ~L~~L~l~~n~~~~~~~~~~~~~~~l~~~~L~~l~l~~~~l~~~~~~-~~l~~L~~L~l~~~~l~~--~~~~~~~l~~L~  106 (321)
                      .++.++++++.+...      ....+..++++.+++.++.+...+.. +.+++|++|++++|.+..  ++..+..+++|+
T Consensus        48 ~~~~l~l~~~~~~~~------~~~~~~~~~l~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~  121 (336)
T 2ast_B           48 LWQTLDLTGKNLHPD------VTGRLLSQGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQ  121 (336)
T ss_dssp             TSSEEECTTCBCCHH------HHHHHHHTTCSEEECTTCEECSCCCSCCCCBCCCEEECTTCEECHHHHHHHHTTBCCCS
T ss_pred             hheeeccccccCCHH------HHHhhhhccceEEEcCCccccccchhhccCCCCCEEEccCCCcCHHHHHHHHhhCCCCC
Confidence            477888877653311      11111116788888888876554443 478888888888888754  444556677777


Q ss_pred             hHHhhccccccccCCCCCCCCCCCCccEEEccCC-CCCc-ccCccccCcccCcEEecCCCCCccc--cccc--ccC-Ccc
Q 037308          107 QIINATCNKLIAKTPNPTLMPHLNKLVILNLRGS-KSLK-SLPSGIFNLEFLTKLDLSGCSKLKR--LLEI--SSG-NIN  179 (321)
Q Consensus       107 ~~l~l~~~~l~~~~~~~~~~~~l~~L~~L~l~~n-~~~~-~~p~~l~~l~~L~~L~l~~~~~~~~--~~~~--~~~-~L~  179 (321)
                      + ++++.|.+.+..+.  .+..+++|++|++++| .+.. .++..+..+++|++|++++|..++.  ++..  .++ +|+
T Consensus       122 ~-L~L~~~~l~~~~~~--~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~  198 (336)
T 2ast_B          122 N-LSLEGLRLSDPIVN--TLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETIT  198 (336)
T ss_dssp             E-EECTTCBCCHHHHH--HHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCC
T ss_pred             E-EeCcCcccCHHHHH--HHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCC
Confidence            7 77777777644444  5666778888888877 3332 2455566777888888887733332  2222  356 788


Q ss_pred             EEEecccc--cc--ccChhhhccCCCCeEecccCc-ccccccccccCCCCCCEEEecCCC-CCCccccccCCCCCCcEEE
Q 037308          180 WLFLRETA--IE--ELPSSIERLLRLGHLDLSDCK-RLKSLPSSLFKLKSLGVLNLGGCS-NLQRLPECLGQLSSPIILN  253 (321)
Q Consensus       180 ~L~l~~~~--i~--~l~~~~~~l~~L~~L~l~~n~-~~~~~~~~~~~l~~L~~L~l~~~~-~~~~~~~~~~~~~~L~~L~  253 (321)
                      +|++++|.  ++  .++..+..+++|++|++++|. +.+..+..+..+++|+.|++++|. ........++.+++|+.|+
T Consensus       199 ~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~  278 (336)
T 2ast_B          199 QLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQ  278 (336)
T ss_dssp             EEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEE
T ss_pred             EEEeCCCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCCCCCCHHHHHHHhcCCCCCEEe
Confidence            88887773  43  356566677778888887777 455556667777788888887774 2222223466677788888


Q ss_pred             cccCCCcc-cchhhhccCCcCEEeccCCCCcccc
Q 037308          254 LAKTNVER-IPESIIQLFVLRYLLLSYSERIQSV  286 (321)
Q Consensus       254 l~~n~l~~-l~~~l~~l~~L~~L~l~~n~~l~~~  286 (321)
                      +++| ++. .-..+.  ..++.|++++| .++.+
T Consensus       279 l~~~-i~~~~~~~l~--~~l~~L~l~~n-~l~~~  308 (336)
T 2ast_B          279 VFGI-VPDGTLQLLK--EALPHLQINCS-HFTTI  308 (336)
T ss_dssp             CTTS-SCTTCHHHHH--HHSTTSEESCC-CSCCT
T ss_pred             ccCc-cCHHHHHHHH--hhCcceEEecc-cCccc
Confidence            8777 431 111221  22444456666 44443

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=99.82  E-value=3.6e-20  Score=156.68  Aligned_cols=199  Identities=11%  Similarity=0.076  Sum_probs=158.5

Q ss_pred             ccccccCCCCCCChHhHHhhccccccccCCCCCCCCCCCCccEEEccCCC-CCcccCccccCcccCcEEecCCCCCcccc
Q 037308           92 IEQLWNGEKHYSNLNQIINATCNKLIAKTPNPTLMPHLNKLVILNLRGSK-SLKSLPSGIFNLEFLTKLDLSGCSKLKRL  170 (321)
Q Consensus        92 l~~~~~~~~~l~~L~~~l~l~~~~l~~~~~~~~~~~~l~~L~~L~l~~n~-~~~~~p~~l~~l~~L~~L~l~~~~~~~~~  170 (321)
                      ++.++.   -.++++. ++++.|.++ .++. ..+.++++|++|++++|. +....+..|..+++|++|++++|..++.+
T Consensus        23 l~~ip~---~~~~l~~-L~l~~n~l~-~i~~-~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i   96 (239)
T 2xwt_C           23 IQRIPS---LPPSTQT-LKLIETHLR-TIPS-HAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYI   96 (239)
T ss_dssp             CSSCCC---CCTTCCE-EEEESCCCS-EECT-TTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEE
T ss_pred             ccccCC---CCCcccE-EEEeCCcce-EECH-HHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEc
Confidence            555555   2236777 999999999 5552 268899999999999997 44444447889999999999984445555


Q ss_pred             ccc---ccCCccEEEeccccccccChhhhccCCCC---eEecccC-cccccccccccCCCCCC-EEEecCCCCCCcccc-
Q 037308          171 LEI---SSGNINWLFLRETAIEELPSSIERLLRLG---HLDLSDC-KRLKSLPSSLFKLKSLG-VLNLGGCSNLQRLPE-  241 (321)
Q Consensus       171 ~~~---~~~~L~~L~l~~~~i~~l~~~~~~l~~L~---~L~l~~n-~~~~~~~~~~~~l~~L~-~L~l~~~~~~~~~~~-  241 (321)
                      +..   .+++|++|++++|.++++|. +..+++|+   +|++++| .+.+..+..+..+++|+ .|++++|.+. .+|. 
T Consensus        97 ~~~~f~~l~~L~~L~l~~n~l~~lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~-~i~~~  174 (239)
T 2xwt_C           97 DPDALKELPLLKFLGIFNTGLKMFPD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFT-SVQGY  174 (239)
T ss_dssp             CTTSEECCTTCCEEEEEEECCCSCCC-CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCC-EECTT
T ss_pred             CHHHhCCCCCCCEEeCCCCCCccccc-cccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCc-ccCHh
Confidence            532   57899999999999999987 77888888   9999999 77766666789999999 9999998876 5544 


Q ss_pred             ccCCCCCCcEEEcccCC-Ccccc-hhhhcc-CCcCEEeccCCCCccccc--Ccccccccccccc
Q 037308          242 CLGQLSSPIILNLAKTN-VERIP-ESIIQL-FVLRYLLLSYSERIQSVS--LPLARGILEDTQR  300 (321)
Q Consensus       242 ~~~~~~~L~~L~l~~n~-l~~l~-~~l~~l-~~L~~L~l~~n~~l~~~~--~~~~l~~l~~~~~  300 (321)
                      .+.. ++|+.|++++|+ ++.++ ..+..+ ++|++|++++| .++.+|  ..++++.|++.++
T Consensus       175 ~~~~-~~L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~N-~l~~l~~~~~~~L~~L~l~~~  236 (239)
T 2xwt_C          175 AFNG-TKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQT-SVTALPSKGLEHLKELIARNT  236 (239)
T ss_dssp             TTTT-CEEEEEECTTCTTCCEECTTTTTTCSBCCSEEECTTC-CCCCCCCTTCTTCSEEECTTC
T ss_pred             hcCC-CCCCEEEcCCCCCcccCCHHHhhccccCCcEEECCCC-ccccCChhHhccCceeeccCc
Confidence            4444 899999999995 99887 467888 99999999999 888887  5667777776653

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=99.81  E-value=5.5e-19  Score=150.54  Aligned_cols=176  Identities=20%  Similarity=0.212  Sum_probs=112.9

Q ss_pred             CcccEEEecCCCCCCCCCcCCcCceeEEeccCCcccccccCCCCCCChHhHHhhccccccccCCCCCCCCCCCCccEEEc
Q 037308           58 AEVKYFHWHGYPLKSLPSNLSAEKLVFLKVPYSDIEQLWNGEKHYSNLNQIINATCNKLIAKTPNPTLMPHLNKLVILNL  137 (321)
Q Consensus        58 ~~L~~l~l~~~~l~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~l~~L~~~l~l~~~~l~~~~~~~~~~~~l~~L~~L~l  137 (321)
                      ...+.+++.++.+..+|..+. ++++.|++++|.++.+..                        .  .+..+++|++|++
T Consensus        14 ~~~~~l~~~~~~l~~~p~~~~-~~l~~L~L~~n~l~~~~~------------------------~--~~~~l~~L~~L~L   66 (251)
T 3m19_A           14 EGKKEVDCQGKSLDSVPSGIP-ADTEKLDLQSTGLATLSD------------------------A--TFRGLTKLTWLNL   66 (251)
T ss_dssp             GGGTEEECTTCCCSSCCSCCC-TTCCEEECTTSCCCCCCT------------------------T--TTTTCTTCCEEEC
T ss_pred             CCCeEEecCCCCccccCCCCC-CCCCEEEccCCCcCccCH------------------------h--HhcCcccCCEEEC
Confidence            456778888888888776643 577788887777765432                        1  3444555555555


Q ss_pred             cCCCCCcccCccccCcccCcEEecCCCCCccccccc--ccCCccEEEeccccccccChh-hhccCCCCeEecccCccccc
Q 037308          138 RGSKSLKSLPSGIFNLEFLTKLDLSGCSKLKRLLEI--SSGNINWLFLRETAIEELPSS-IERLLRLGHLDLSDCKRLKS  214 (321)
Q Consensus       138 ~~n~~~~~~p~~l~~l~~L~~L~l~~~~~~~~~~~~--~~~~L~~L~l~~~~i~~l~~~-~~~l~~L~~L~l~~n~~~~~  214 (321)
                      ++|.+.+..+..+..+++|++|++++|......+..  .+++|++|++++|.+++++.. +..+++|++|++++|.+.+.
T Consensus        67 ~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~  146 (251)
T 3m19_A           67 DYNQLQTLSAGVFDDLTELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSI  146 (251)
T ss_dssp             TTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCC
T ss_pred             CCCcCCccCHhHhccCCcCCEEECCCCcccccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCcc
Confidence            555544333334445555555555554322211111  245556666666666666643 56777888888888877766


Q ss_pred             ccccccCCCCCCEEEecCCCCCCccccccCCCCCCcEEEcccCCCc
Q 037308          215 LPSSLFKLKSLGVLNLGGCSNLQRLPECLGQLSSPIILNLAKTNVE  260 (321)
Q Consensus       215 ~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~  260 (321)
                      .+..++.+++|+.|++++|.+.+..+..+..+++|+.|++++|.++
T Consensus       147 ~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~  192 (251)
T 3m19_A          147 PAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQFD  192 (251)
T ss_dssp             CTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBC
T ss_pred             CHHHcCcCcCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCcee
Confidence            6666778888888888888777666667778888888888888876

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=99.80  E-value=9.6e-19  Score=149.06  Aligned_cols=169  Identities=17%  Similarity=0.146  Sum_probs=142.8

Q ss_pred             HhhccccccccCCCCCCCCCCCCccEEEccCCCCCcccCccccCcccCcEEecCCCCCccccccc--ccCCccEEEeccc
Q 037308          109 INATCNKLIAKTPNPTLMPHLNKLVILNLRGSKSLKSLPSGIFNLEFLTKLDLSGCSKLKRLLEI--SSGNINWLFLRET  186 (321)
Q Consensus       109 l~l~~~~l~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~l~~l~~L~~L~l~~~~~~~~~~~~--~~~~L~~L~l~~~  186 (321)
                      ++++.+.++ .+|.  .+.  +.++.|++++|.+.+..+..+.++++|++|++++|...+..+..  .+++|++|++++|
T Consensus        19 l~~~~~~l~-~~p~--~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n   93 (251)
T 3m19_A           19 VDCQGKSLD-SVPS--GIP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANN   93 (251)
T ss_dssp             EECTTCCCS-SCCS--CCC--TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTS
T ss_pred             EecCCCCcc-ccCC--CCC--CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECCCC
Confidence            666677777 6765  443  68999999999977766777999999999999998655444332  5789999999999


Q ss_pred             cccccCh-hhhccCCCCeEecccCcccccccccccCCCCCCEEEecCCCCCCccccccCCCCCCcEEEcccCCCcccch-
Q 037308          187 AIEELPS-SIERLLRLGHLDLSDCKRLKSLPSSLFKLKSLGVLNLGGCSNLQRLPECLGQLSSPIILNLAKTNVERIPE-  264 (321)
Q Consensus       187 ~i~~l~~-~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~l~~-  264 (321)
                      .+++++. .+..+++|++|++++|.+.+..+..+..+++|+.|++++|.+.+..+..+..+++|+.|++++|+++.++. 
T Consensus        94 ~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~  173 (251)
T 3m19_A           94 QLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVPHG  173 (251)
T ss_dssp             CCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTT
T ss_pred             cccccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCCcCCccCHH
Confidence            9999874 47889999999999999887776778899999999999998887766689999999999999999998775 


Q ss_pred             hhhccCCcCEEeccCCCC
Q 037308          265 SIIQLFVLRYLLLSYSER  282 (321)
Q Consensus       265 ~l~~l~~L~~L~l~~n~~  282 (321)
                      .+..+++|++|++++|+.
T Consensus       174 ~~~~l~~L~~L~l~~N~~  191 (251)
T 3m19_A          174 AFDRLGKLQTITLFGNQF  191 (251)
T ss_dssp             TTTTCTTCCEEECCSCCB
T ss_pred             HHhCCCCCCEEEeeCCce
Confidence            678899999999999944

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=99.80  E-value=7.2e-21  Score=172.40  Aligned_cols=180  Identities=14%  Similarity=0.051  Sum_probs=143.6

Q ss_pred             CCCCCCccEEEccCCCCCc----ccCccccCcccCcEEecCCCCCccccc----cc--cc---------CCccEEEeccc
Q 037308          126 MPHLNKLVILNLRGSKSLK----SLPSGIFNLEFLTKLDLSGCSKLKRLL----EI--SS---------GNINWLFLRET  186 (321)
Q Consensus       126 ~~~l~~L~~L~l~~n~~~~----~~p~~l~~l~~L~~L~l~~~~~~~~~~----~~--~~---------~~L~~L~l~~~  186 (321)
                      +..+++|++|++++|.+..    .+|..+..+++|++|++++|......+    ..  .+         ++|++|++++|
T Consensus        90 l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n  169 (386)
T 2ca6_A           90 LLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRN  169 (386)
T ss_dssp             HTTCTTCCEEECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSS
T ss_pred             HhhCCcccEEECCCCcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCC
Confidence            4678999999999999765    367678889999999999987533222    11  12         89999999999


Q ss_pred             ccc--ccC---hhhhccCCCCeEecccCcccc-----cccccccCCCCCCEEEecCCCCC----CccccccCCCCCCcEE
Q 037308          187 AIE--ELP---SSIERLLRLGHLDLSDCKRLK-----SLPSSLFKLKSLGVLNLGGCSNL----QRLPECLGQLSSPIIL  252 (321)
Q Consensus       187 ~i~--~l~---~~~~~l~~L~~L~l~~n~~~~-----~~~~~~~~l~~L~~L~l~~~~~~----~~~~~~~~~~~~L~~L  252 (321)
                      .++  .++   ..+..+++|++|++++|.+..     ..+..+..+++|+.|++++|.+.    ..++..+..+++|+.|
T Consensus       170 ~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L  249 (386)
T 2ca6_A          170 RLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLREL  249 (386)
T ss_dssp             CCTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEE
T ss_pred             CCCcHHHHHHHHHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEE
Confidence            997  344   457788999999999998773     23447889999999999999875    6677888999999999


Q ss_pred             EcccCCCcc-----cchhhhc--cCCcCEEeccCCCCccc-----cc--C---ccccccccccccCccchh
Q 037308          253 NLAKTNVER-----IPESIIQ--LFVLRYLLLSYSERIQS-----VS--L---PLARGILEDTQRSPHMDH  306 (321)
Q Consensus       253 ~l~~n~l~~-----l~~~l~~--l~~L~~L~l~~n~~l~~-----~~--~---~~~l~~l~~~~~~~~~~~  306 (321)
                      ++++|.++.     ++..+..  +++|++|++++| .++.     ++  +   .++++.|++.++......
T Consensus       250 ~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n-~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~~~~  319 (386)
T 2ca6_A          250 GLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYN-EIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEED  319 (386)
T ss_dssp             ECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSS-CCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCTTS
T ss_pred             ECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCC-cCCHHHHHHHHHHHHhcCCCceEEEccCCcCCcch
Confidence            999999984     4666644  899999999999 6766     66  3   478889988887655444

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=99.79  E-value=1.1e-20  Score=167.86  Aligned_cols=236  Identities=17%  Similarity=0.163  Sum_probs=188.0

Q ss_pred             CcccEEEecCCCCCCCCCcC-Cc--CceeEEeccCCcccccccCCCCCCChHhHHhhcccccccc-CCCCCCCCCCCCcc
Q 037308           58 AEVKYFHWHGYPLKSLPSNL-SA--EKLVFLKVPYSDIEQLWNGEKHYSNLNQIINATCNKLIAK-TPNPTLMPHLNKLV  133 (321)
Q Consensus        58 ~~L~~l~l~~~~l~~~~~~~-~l--~~L~~L~l~~~~l~~~~~~~~~l~~L~~~l~l~~~~l~~~-~~~~~~~~~l~~L~  133 (321)
                      ..++.++++++.+.  +..+ .+  ++++.+++++|.+.........+++++. ++++.|.+.+. ++.  .+..+++|+
T Consensus        47 ~~~~~l~l~~~~~~--~~~~~~~~~~~l~~L~l~~n~l~~~~~~~~~~~~L~~-L~L~~~~l~~~~~~~--~~~~~~~L~  121 (336)
T 2ast_B           47 SLWQTLDLTGKNLH--PDVTGRLLSQGVIAFRCPRSFMDQPLAEHFSPFRVQH-MDLSNSVIEVSTLHG--ILSQCSKLQ  121 (336)
T ss_dssp             TTSSEEECTTCBCC--HHHHHHHHHTTCSEEECTTCEECSCCCSCCCCBCCCE-EECTTCEECHHHHHH--HHTTBCCCS
T ss_pred             hhheeeccccccCC--HHHHHhhhhccceEEEcCCccccccchhhccCCCCCE-EEccCCCcCHHHHHH--HHhhCCCCC
Confidence            44788999887765  2322 44  8999999999999988777888999999 99999988744 554  678899999


Q ss_pred             EEEccCCCCCcccCccccCcccCcEEecCCCCCccc--cccc--ccCCccEEEeccc-cccc--cChhhhccC-CCCeEe
Q 037308          134 ILNLRGSKSLKSLPSGIFNLEFLTKLDLSGCSKLKR--LLEI--SSGNINWLFLRET-AIEE--LPSSIERLL-RLGHLD  205 (321)
Q Consensus       134 ~L~l~~n~~~~~~p~~l~~l~~L~~L~l~~~~~~~~--~~~~--~~~~L~~L~l~~~-~i~~--l~~~~~~l~-~L~~L~  205 (321)
                      +|++++|.+....+..++.+++|++|++++|..++.  ++..  .+++|++|++++| .+++  ++..+..++ +|++|+
T Consensus       122 ~L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~  201 (336)
T 2ast_B          122 NLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLN  201 (336)
T ss_dssp             EEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEE
T ss_pred             EEeCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEE
Confidence            999999987767777788999999999999854542  4432  5889999999999 8886  667788899 999999


Q ss_pred             cccC--ccc-ccccccccCCCCCCEEEecCCC-CCCccccccCCCCCCcEEEcccCC-Cc-ccchhhhccCCcCEEeccC
Q 037308          206 LSDC--KRL-KSLPSSLFKLKSLGVLNLGGCS-NLQRLPECLGQLSSPIILNLAKTN-VE-RIPESIIQLFVLRYLLLSY  279 (321)
Q Consensus       206 l~~n--~~~-~~~~~~~~~l~~L~~L~l~~~~-~~~~~~~~~~~~~~L~~L~l~~n~-l~-~l~~~l~~l~~L~~L~l~~  279 (321)
                      +++|  .+. +.++..+..+++|+.|++++|. +....+..+..+++|+.|++++|. +. .....+..+++|++|++++
T Consensus       202 l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~  281 (336)
T 2ast_B          202 LSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFG  281 (336)
T ss_dssp             CCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTT
T ss_pred             eCCCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCCCCCCHHHHHHHhcCCCCCEEeccC
Confidence            9999  444 4566777889999999999998 556677788999999999999995 43 2223578899999999999


Q ss_pred             CCCccc--cc-Ccccccccccccc
Q 037308          280 SERIQS--VS-LPLARGILEDTQR  300 (321)
Q Consensus       280 n~~l~~--~~-~~~~l~~l~~~~~  300 (321)
                      |  +..  +. +...++.|++..+
T Consensus       282 ~--i~~~~~~~l~~~l~~L~l~~n  303 (336)
T 2ast_B          282 I--VPDGTLQLLKEALPHLQINCS  303 (336)
T ss_dssp             S--SCTTCHHHHHHHSTTSEESCC
T ss_pred             c--cCHHHHHHHHhhCcceEEecc
Confidence            9  332  22 4456777776553

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*

Probab=99.79  E-value=2.9e-19  Score=159.73  Aligned_cols=245  Identities=19%  Similarity=0.227  Sum_probs=165.1

Q ss_pred             cEEEecCCCCCCCCCcCCcCceeEEeccCCccccccc-CCCCCCChHhHHhhccccccccCCCCCCCCCCCCccE-EEcc
Q 037308           61 KYFHWHGYPLKSLPSNLSAEKLVFLKVPYSDIEQLWN-GEKHYSNLNQIINATCNKLIAKTPNPTLMPHLNKLVI-LNLR  138 (321)
Q Consensus        61 ~~l~l~~~~l~~~~~~~~l~~L~~L~l~~~~l~~~~~-~~~~l~~L~~~l~l~~~~l~~~~~~~~~~~~l~~L~~-L~l~  138 (321)
                      +.++.+++.++.+|..+ .+++++|++++|+|+.++. .+..+++|+. |+++.|.+.+.++. ..|.+++++.+ +.+.
T Consensus        12 ~~v~C~~~~Lt~iP~~l-~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~-L~Ls~N~i~~~i~~-~~f~~L~~l~~~l~~~   88 (350)
T 4ay9_X           12 RVFLCQESKVTEIPSDL-PRNAIELRFVLTKLRVIQKGAFSGFGDLEK-IEISQNDVLEVIEA-DVFSNLPKLHEIRIEK   88 (350)
T ss_dssp             TEEEEESTTCCSCCTTC-CTTCSEEEEESCCCSEECTTSSTTCTTCCE-EEEECCTTCCEECT-TSBCSCTTCCEEEEEE
T ss_pred             CEEEecCCCCCccCcCc-CCCCCEEEccCCcCCCcCHHHHcCCCCCCE-EECcCCCCCCccCh-hHhhcchhhhhhhccc
Confidence            45667777788887765 4678888888888888875 4577888888 88888887534542 25677777665 4555


Q ss_pred             CCCCCcccCccccCcccCcEEecCCCCCccccccc---ccCCccEEEecc-ccccccChh-hhcc-CCCCeEecccCccc
Q 037308          139 GSKSLKSLPSGIFNLEFLTKLDLSGCSKLKRLLEI---SSGNINWLFLRE-TAIEELPSS-IERL-LRLGHLDLSDCKRL  212 (321)
Q Consensus       139 ~n~~~~~~p~~l~~l~~L~~L~l~~~~~~~~~~~~---~~~~L~~L~l~~-~~i~~l~~~-~~~l-~~L~~L~l~~n~~~  212 (321)
                      +|.+....|..|..+++|++|++++|... .++..   ...++..|++.+ +.+..++.. +..+ ..++.|++++|.+.
T Consensus        89 ~N~l~~l~~~~f~~l~~L~~L~l~~n~l~-~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~  167 (350)
T 4ay9_X           89 ANNLLYINPEAFQNLPNLQYLLISNTGIK-HLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQ  167 (350)
T ss_dssp             ETTCCEECTTSBCCCTTCCEEEEEEECCS-SCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCC
T ss_pred             CCcccccCchhhhhccccccccccccccc-cCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhcccccccc
Confidence            56655444666788888888888886543 33322   344566777754 567776643 4444 35778888888865


Q ss_pred             ccccccccCCCCCCEEEecCCCCCCcccc-ccCCCCCCcEEEcccCCCcccchhhhccCCcCEEeccCCCCcccccCccc
Q 037308          213 KSLPSSLFKLKSLGVLNLGGCSNLQRLPE-CLGQLSSPIILNLAKTNVERIPESIIQLFVLRYLLLSYSERIQSVSLPLA  291 (321)
Q Consensus       213 ~~~~~~~~~l~~L~~L~l~~~~~~~~~~~-~~~~~~~L~~L~l~~n~l~~l~~~l~~l~~L~~L~l~~n~~l~~~~~~~~  291 (321)
                      . ++.......+|+.+++.+++..+.+|. .|.++++|+.||+++|+++.+|.  ..+.+|++|.+.++..++.+|...+
T Consensus       168 ~-i~~~~f~~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~l~~lp~--~~~~~L~~L~~l~~~~l~~lP~l~~  244 (350)
T 4ay9_X          168 E-IHNSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPS--YGLENLKKLRARSTYNLKKLPTLEK  244 (350)
T ss_dssp             E-ECTTSSTTEEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTSCCCCCCS--SSCTTCCEEECTTCTTCCCCCCTTT
T ss_pred             C-CChhhccccchhHHhhccCCcccCCCHHHhccCcccchhhcCCCCcCccCh--hhhccchHhhhccCCCcCcCCCchh
Confidence            4 444444566788888887666666664 56788888888888888888875  3366777888878878888774455


Q ss_pred             cccccccccCccchhhHHHHH
Q 037308          292 RGILEDTQRSPHMDHKLAVRW  312 (321)
Q Consensus       292 l~~l~~~~~~~~~~~~l~~~~  312 (321)
                      +..|.......+........|
T Consensus       245 l~~L~~l~l~~~~~c~~~~~~  265 (350)
T 4ay9_X          245 LVALMEASLTYPSHCCAFANW  265 (350)
T ss_dssp             CCSCCEEECSCHHHHHHHHHS
T ss_pred             CcChhhCcCCCCccccchhhh
Confidence            555555555555444444444

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=99.78  E-value=2.5e-19  Score=157.44  Aligned_cols=216  Identities=18%  Similarity=0.062  Sum_probs=163.7

Q ss_pred             CcCceeEEeccCCccccc--c--cCCCCCCChHhHHhhccccccccCCCCCCC--CCCCCccEEEccCCCCCcccC----
Q 037308           78 SAEKLVFLKVPYSDIEQL--W--NGEKHYSNLNQIINATCNKLIAKTPNPTLM--PHLNKLVILNLRGSKSLKSLP----  147 (321)
Q Consensus        78 ~l~~L~~L~l~~~~l~~~--~--~~~~~l~~L~~~l~l~~~~l~~~~~~~~~~--~~l~~L~~L~l~~n~~~~~~p----  147 (321)
                      ....++.+.+.++.+...  .  .....++++++ ++++.|.+.+..+.  .+  ..+++|++|++++|.+.+..+    
T Consensus        62 ~~~~l~~l~l~~~~~~~~~~~~~~~~~~~~~L~~-L~l~~n~l~~~~~~--~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~  138 (310)
T 4glp_A           62 KALRVRRLTVGAAQVPAQLLVGALRVLAYSRLKE-LTLEDLKITGTMPP--LPLEATGLALSSLRLRNVSWATGRSWLAE  138 (310)
T ss_dssp             SSCCCCEEEECSCCCBHHHHHHHHHHHHHSCCCE-EEEESCCCBSCCCC--CSSSCCCBCCSSCEEESCCCSSTTSSHHH
T ss_pred             hhcceeEEEEeCCcCCHHHHHHHHHhcccCceeE-EEeeCCEeccchhh--hhhhccCCCCCEEEeecccccchhhhhHH
Confidence            455678888888776431  0  11123455777 99999999866665  55  889999999999999766544    


Q ss_pred             ccccCcccCcEEecCCCCCccccccc--ccCCccEEEeccccccc---cCh--hhhccCCCCeEecccCcccccc--cc-
Q 037308          148 SGIFNLEFLTKLDLSGCSKLKRLLEI--SSGNINWLFLRETAIEE---LPS--SIERLLRLGHLDLSDCKRLKSL--PS-  217 (321)
Q Consensus       148 ~~l~~l~~L~~L~l~~~~~~~~~~~~--~~~~L~~L~l~~~~i~~---l~~--~~~~l~~L~~L~l~~n~~~~~~--~~-  217 (321)
                      ..+..+++|++|++++|......+..  .+++|++|++++|.+.+   ++.  .+..+++|++|++++|.+....  +. 
T Consensus       139 ~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~  218 (310)
T 4glp_A          139 LQQWLKPGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMETPTGVCAA  218 (310)
T ss_dssp             HHTTBCSCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCHHHHHHH
T ss_pred             HHhhhccCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCchHHHHHH
Confidence            23456899999999998765544433  57899999999999765   332  2467899999999999975321  11 


Q ss_pred             cccCCCCCCEEEecCCCCCCccccccCCC---CCCcEEEcccCCCcccchhhhccCCcCEEeccCCCCcccccCc---cc
Q 037308          218 SLFKLKSLGVLNLGGCSNLQRLPECLGQL---SSPIILNLAKTNVERIPESIIQLFVLRYLLLSYSERIQSVSLP---LA  291 (321)
Q Consensus       218 ~~~~l~~L~~L~l~~~~~~~~~~~~~~~~---~~L~~L~l~~n~l~~l~~~l~~l~~L~~L~l~~n~~l~~~~~~---~~  291 (321)
                      .++.+++|+.|++++|.+.+..|..+..+   ++|+.|++++|+++.+|..+.  ++|++|++++| .++.+|.+   ++
T Consensus       219 l~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~~--~~L~~L~Ls~N-~l~~~~~~~~l~~  295 (310)
T 4glp_A          219 LAAAGVQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLEQVPKGLP--AKLRVLDLSSN-RLNRAPQPDELPE  295 (310)
T ss_dssp             HHHHTCCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCCCSCCSCCC--SCCSCEECCSC-CCCSCCCTTSCCC
T ss_pred             HHhcCCCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCCCCCchhhhhc--CCCCEEECCCC-cCCCCchhhhCCC
Confidence            35788999999999999988877777766   699999999999999997664  89999999999 88887733   45


Q ss_pred             cccccccc
Q 037308          292 RGILEDTQ  299 (321)
Q Consensus       292 l~~l~~~~  299 (321)
                      ++.|++.+
T Consensus       296 L~~L~L~~  303 (310)
T 4glp_A          296 VDNLTLDG  303 (310)
T ss_dssp             CSCEECSS
T ss_pred             ccEEECcC
Confidence            56665554

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=99.78  E-value=1.2e-18  Score=151.67  Aligned_cols=172  Identities=24%  Similarity=0.279  Sum_probs=95.4

Q ss_pred             CcCceeEEeccCCcccccccCCCCCCChHhHHhhccccccccCCCCCCCCCCCCccEEEccCCCCCcccCccccCcccCc
Q 037308           78 SAEKLVFLKVPYSDIEQLWNGEKHYSNLNQIINATCNKLIAKTPNPTLMPHLNKLVILNLRGSKSLKSLPSGIFNLEFLT  157 (321)
Q Consensus        78 ~l~~L~~L~l~~~~l~~~~~~~~~l~~L~~~l~l~~~~l~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~l~~l~~L~  157 (321)
                      .+++|+.|++++|.+..+ .++..+++|+. ++++.|.++ .++   .+..+++|++|++++|.+ ..+|. +..+++|+
T Consensus        44 ~l~~L~~L~l~~~~i~~~-~~~~~l~~L~~-L~L~~n~l~-~~~---~l~~l~~L~~L~l~~n~l-~~~~~-l~~l~~L~  115 (291)
T 1h6t_A           44 ELNSIDQIIANNSDIKSV-QGIQYLPNVTK-LFLNGNKLT-DIK---PLANLKNLGWLFLDENKV-KDLSS-LKDLKKLK  115 (291)
T ss_dssp             HHHTCCEEECTTSCCCCC-TTGGGCTTCCE-EECCSSCCC-CCG---GGTTCTTCCEEECCSSCC-CCGGG-GTTCTTCC
T ss_pred             hcCcccEEEccCCCcccC-hhHhcCCCCCE-EEccCCccC-CCc---ccccCCCCCEEECCCCcC-CCChh-hccCCCCC
Confidence            466666666666666554 23444455555 555555554 333   256677777777777763 33443 66777777


Q ss_pred             EEecCCCCCccccccc-ccCCccEEEeccccccccChhhhccCCCCeEecccCcccccccccccCCCCCCEEEecCCCCC
Q 037308          158 KLDLSGCSKLKRLLEI-SSGNINWLFLRETAIEELPSSIERLLRLGHLDLSDCKRLKSLPSSLFKLKSLGVLNLGGCSNL  236 (321)
Q Consensus       158 ~L~l~~~~~~~~~~~~-~~~~L~~L~l~~~~i~~l~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~~~~~  236 (321)
                      +|++++|.... ++.. .+++|+.|++++|.++++ ..+..+++|++|++++|.+.+..+  +..+++|+.|++++|.+.
T Consensus       116 ~L~L~~n~i~~-~~~l~~l~~L~~L~l~~n~l~~~-~~l~~l~~L~~L~L~~N~l~~~~~--l~~l~~L~~L~L~~N~i~  191 (291)
T 1h6t_A          116 SLSLEHNGISD-INGLVHLPQLESLYLGNNKITDI-TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHIS  191 (291)
T ss_dssp             EEECTTSCCCC-CGGGGGCTTCCEEECCSSCCCCC-GGGGGCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCC
T ss_pred             EEECCCCcCCC-ChhhcCCCCCCEEEccCCcCCcc-hhhccCCCCCEEEccCCccccchh--hcCCCccCEEECCCCcCC
Confidence            77777754322 2222 355566666666666555 235555566666666655444332  555556666666655443


Q ss_pred             CccccccCCCCCCcEEEcccCCCcccc
Q 037308          237 QRLPECLGQLSSPIILNLAKTNVERIP  263 (321)
Q Consensus       237 ~~~~~~~~~~~~L~~L~l~~n~l~~l~  263 (321)
                      + ++ .+..+++|+.|++++|+++..|
T Consensus       192 ~-l~-~l~~l~~L~~L~l~~n~i~~~~  216 (291)
T 1h6t_A          192 D-LR-ALAGLKNLDVLELFSQECLNKP  216 (291)
T ss_dssp             B-CG-GGTTCTTCSEEEEEEEEEECCC
T ss_pred             C-Ch-hhccCCCCCEEECcCCcccCCc
Confidence            3 22 3555556666666665555433

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}

Probab=99.77  E-value=4.9e-18  Score=160.33  Aligned_cols=187  Identities=22%  Similarity=0.263  Sum_probs=135.8

Q ss_pred             CcccEEEecCCCCCCCCCcCCcCceeEEeccCCcccccccCCCCCCChHhHHhhccccccccCCCCCCCCCCCCccEEEc
Q 037308           58 AEVKYFHWHGYPLKSLPSNLSAEKLVFLKVPYSDIEQLWNGEKHYSNLNQIINATCNKLIAKTPNPTLMPHLNKLVILNL  137 (321)
Q Consensus        58 ~~L~~l~l~~~~l~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~l~~L~~~l~l~~~~l~~~~~~~~~~~~l~~L~~L~l  137 (321)
                      .+|+.|++++|.+..+|..+ .++|++|++++|.++.++   ..+++|+. ++++.|.++ .+|.   +..  +|++|++
T Consensus        59 ~~L~~L~Ls~n~L~~lp~~l-~~~L~~L~Ls~N~l~~ip---~~l~~L~~-L~Ls~N~l~-~ip~---l~~--~L~~L~L  127 (571)
T 3cvr_A           59 NQFSELQLNRLNLSSLPDNL-PPQITVLEITQNALISLP---ELPASLEY-LDACDNRLS-TLPE---LPA--SLKHLDV  127 (571)
T ss_dssp             TTCSEEECCSSCCSCCCSCC-CTTCSEEECCSSCCSCCC---CCCTTCCE-EECCSSCCS-CCCC---CCT--TCCEEEC
T ss_pred             CCccEEEeCCCCCCccCHhH-cCCCCEEECcCCCCcccc---cccCCCCE-EEccCCCCC-Ccch---hhc--CCCEEEC
Confidence            48899999999988888765 378999999999998776   44677888 888888888 5653   333  8888888


Q ss_pred             cCCCCCcccCccccCcccCcEEecCCCCCcccccccccCCccEEEeccccccccChhhhccCCCCeEecccCcccccccc
Q 037308          138 RGSKSLKSLPSGIFNLEFLTKLDLSGCSKLKRLLEISSGNINWLFLRETAIEELPSSIERLLRLGHLDLSDCKRLKSLPS  217 (321)
Q Consensus       138 ~~n~~~~~~p~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~i~~l~~~~~~l~~L~~L~l~~n~~~~~~~~  217 (321)
                      ++|.+.+ +|.   .+++|+.|++++|.. +.+|. .+++|++|++++|.++.+|. +.  ++|++|++++|.+. .+|.
T Consensus       128 s~N~l~~-lp~---~l~~L~~L~Ls~N~l-~~lp~-~l~~L~~L~Ls~N~L~~lp~-l~--~~L~~L~Ls~N~L~-~lp~  197 (571)
T 3cvr_A          128 DNNQLTM-LPE---LPALLEYINADNNQL-TMLPE-LPTSLEVLSVRNNQLTFLPE-LP--ESLEALDVSTNLLE-SLPA  197 (571)
T ss_dssp             CSSCCSC-CCC---CCTTCCEEECCSSCC-SCCCC-CCTTCCEEECCSSCCSCCCC-CC--TTCCEEECCSSCCS-SCCC
T ss_pred             CCCcCCC-CCC---cCccccEEeCCCCcc-CcCCC-cCCCcCEEECCCCCCCCcch-hh--CCCCEEECcCCCCC-chhh
Confidence            8887544 665   578888888888654 34555 37788888888888888776 44  77888888887766 4444


Q ss_pred             cccCCCCC-------CEEEecCCCCCCccccccCCCCCCcEEEcccCCCc-ccchhhhcc
Q 037308          218 SLFKLKSL-------GVLNLGGCSNLQRLPECLGQLSSPIILNLAKTNVE-RIPESIIQL  269 (321)
Q Consensus       218 ~~~~l~~L-------~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~-~l~~~l~~l  269 (321)
                       +..  +|       +.|++++|.+. .+|..+..+++|+.|++++|.++ .+|..+..+
T Consensus       198 -~~~--~L~~~~~~L~~L~Ls~N~l~-~lp~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l  253 (571)
T 3cvr_A          198 -VPV--RNHHSEETEIFFRCRENRIT-HIPENILSLDPTCTIILEDNPLSSRIRESLSQQ  253 (571)
T ss_dssp             -CC----------CCEEEECCSSCCC-CCCGGGGGSCTTEEEECCSSSCCHHHHHHHHHH
T ss_pred             -HHH--hhhcccccceEEecCCCcce-ecCHHHhcCCCCCEEEeeCCcCCCcCHHHHHHh
Confidence             443  56       77888876654 46666667788888888888877 556655544

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}

Probab=99.77  E-value=3.9e-20  Score=166.19  Aligned_cols=247  Identities=13%  Similarity=0.031  Sum_probs=120.4

Q ss_pred             eecCchhhhccChhhhcCCCCceEEEEeecCCCCccccceeccCCCCc-C-cccEEEecCCCCCCCCCc-C-Cc-----C
Q 037308           10 LDMSTVKEIRLNLSTFTKMPKLRFLKFYSSSFNGENKCKVSYLQDPRF-A-EVKYFHWHGYPLKSLPSN-L-SA-----E   80 (321)
Q Consensus        10 l~~~~~~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~l~~-~-~L~~l~l~~~~l~~~~~~-~-~l-----~   80 (321)
                      ++++.+......+..+...++|++|++++|.+++...  ......+.. + +|+.|++++|.+...... + .+     +
T Consensus         3 ~~ls~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~--~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~   80 (362)
T 3goz_A            3 YKLTLHPGSNPVEEFTSIPHGVTSLDLSLNNLYSIST--VELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPA   80 (362)
T ss_dssp             EECCCCTTCCHHHHHHTSCTTCCEEECTTSCGGGSCH--HHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCT
T ss_pred             cccccccchHHHHHHHhCCCCceEEEccCCCCChHHH--HHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCC
Confidence            3455554444444455555669999998887654322  111133333 5 788888888887655332 2 22     8


Q ss_pred             ceeEEeccCCcccccccC-----CCCC-CChHhHHhhccccccccCCCC---CCCCC-CCCccEEEccCCCCCc----cc
Q 037308           81 KLVFLKVPYSDIEQLWNG-----EKHY-SNLNQIINATCNKLIAKTPNP---TLMPH-LNKLVILNLRGSKSLK----SL  146 (321)
Q Consensus        81 ~L~~L~l~~~~l~~~~~~-----~~~l-~~L~~~l~l~~~~l~~~~~~~---~~~~~-l~~L~~L~l~~n~~~~----~~  146 (321)
                      +|++|++++|.++.....     +... ++|+. ++++.|.++ ..+..   ..+.. .++|++|++++|.+..    .+
T Consensus        81 ~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~-L~Ls~N~l~-~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l  158 (362)
T 3goz_A           81 NVTSLNLSGNFLSYKSSDELVKTLAAIPFTITV-LDLGWNDFS-SKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDEL  158 (362)
T ss_dssp             TCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCE-EECCSSCGG-GSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHH
T ss_pred             CccEEECcCCcCChHHHHHHHHHHHhCCCCccE-EECcCCcCC-cHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHH
Confidence            888888888888753221     2222 45555 555555555 22210   00222 2355566666555332    12


Q ss_pred             CccccCcc-cCcEEecCCCCCccccccc------cc-CCccEEEeccccccc-----cChhhhc-cCCCCeEecccCccc
Q 037308          147 PSGIFNLE-FLTKLDLSGCSKLKRLLEI------SS-GNINWLFLRETAIEE-----LPSSIER-LLRLGHLDLSDCKRL  212 (321)
Q Consensus       147 p~~l~~l~-~L~~L~l~~~~~~~~~~~~------~~-~~L~~L~l~~~~i~~-----l~~~~~~-l~~L~~L~l~~n~~~  212 (321)
                      +..+..++ +|+.|++++|......+..      .. ++|++|++++|.+++     ++..+.. .++|++|++++|.+.
T Consensus       159 ~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~  238 (362)
T 3goz_A          159 IQILAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLH  238 (362)
T ss_dssp             HHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCSSCCC
T ss_pred             HHHHhcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEECcCCCCC
Confidence            22223333 5555555555432222110      11 355555555555554     3333333 235555555555544


Q ss_pred             cccc----ccccCCCCCCEEEecCCCCCC-------ccccccCCCCCCcEEEcccCCCc
Q 037308          213 KSLP----SSLFKLKSLGVLNLGGCSNLQ-------RLPECLGQLSSPIILNLAKTNVE  260 (321)
Q Consensus       213 ~~~~----~~~~~l~~L~~L~l~~~~~~~-------~~~~~~~~~~~L~~L~l~~n~l~  260 (321)
                      +..+    ..+..+++|+.|++++|.+..       .++..+..+++|+.||+++|.+.
T Consensus       239 ~~~~~~l~~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N~l~  297 (362)
T 3goz_A          239 GPSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEIH  297 (362)
T ss_dssp             CCCHHHHHHTTTTTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTTCCEEEEECTTSCBCC
T ss_pred             cHHHHHHHHHHhcCCCccEEEeccCCccccCHHHHHHHHHHhccCCceEEEecCCCcCC
Confidence            3222    223444555555555544211       12223444455555555555554

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}

Probab=99.76  E-value=9.7e-18  Score=158.32  Aligned_cols=165  Identities=18%  Similarity=0.201  Sum_probs=81.4

Q ss_pred             CcccEEEecCCCCCCCCCcCCcCceeEEeccCCcccccccCCCCCCChHhHHhhccccccccCCCCCCCCCCCCccEEEc
Q 037308           58 AEVKYFHWHGYPLKSLPSNLSAEKLVFLKVPYSDIEQLWNGEKHYSNLNQIINATCNKLIAKTPNPTLMPHLNKLVILNL  137 (321)
Q Consensus        58 ~~L~~l~l~~~~l~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~l~~L~~~l~l~~~~l~~~~~~~~~~~~l~~L~~L~l  137 (321)
                      ++|++|++++|.+..+|  ..+++|++|++++|.++.++. +..  +|+. |+++.|.++ .+|   .  .+++|++|++
T Consensus        80 ~~L~~L~Ls~N~l~~ip--~~l~~L~~L~Ls~N~l~~ip~-l~~--~L~~-L~Ls~N~l~-~lp---~--~l~~L~~L~L  147 (571)
T 3cvr_A           80 PQITVLEITQNALISLP--ELPASLEYLDACDNRLSTLPE-LPA--SLKH-LDVDNNQLT-MLP---E--LPALLEYINA  147 (571)
T ss_dssp             TTCSEEECCSSCCSCCC--CCCTTCCEEECCSSCCSCCCC-CCT--TCCE-EECCSSCCS-CCC---C--CCTTCCEEEC
T ss_pred             CCCCEEECcCCCCcccc--cccCCCCEEEccCCCCCCcch-hhc--CCCE-EECCCCcCC-CCC---C--cCccccEEeC
Confidence            45555555555555555  234555555555555555444 222  4555 555555555 343   1  3455555555


Q ss_pred             cCCCCCcccCccccCcccCcEEecCCCCCcccccccccCCccEEEeccccccccChhhhccCCC-------CeEecccCc
Q 037308          138 RGSKSLKSLPSGIFNLEFLTKLDLSGCSKLKRLLEISSGNINWLFLRETAIEELPSSIERLLRL-------GHLDLSDCK  210 (321)
Q Consensus       138 ~~n~~~~~~p~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~i~~l~~~~~~l~~L-------~~L~l~~n~  210 (321)
                      ++|.+. .+|.   .+++|+.|++++|.. +.+|.. .++|++|++++|.++.+|. +..  +|       +.|++++|.
T Consensus       148 s~N~l~-~lp~---~l~~L~~L~Ls~N~L-~~lp~l-~~~L~~L~Ls~N~L~~lp~-~~~--~L~~~~~~L~~L~Ls~N~  218 (571)
T 3cvr_A          148 DNNQLT-MLPE---LPTSLEVLSVRNNQL-TFLPEL-PESLEALDVSTNLLESLPA-VPV--RNHHSEETEIFFRCRENR  218 (571)
T ss_dssp             CSSCCS-CCCC---CCTTCCEEECCSSCC-SCCCCC-CTTCCEEECCSSCCSSCCC-CC----------CCEEEECCSSC
T ss_pred             CCCccC-cCCC---cCCCcCEEECCCCCC-CCcchh-hCCCCEEECcCCCCCchhh-HHH--hhhcccccceEEecCCCc
Confidence            555532 2443   345555555555432 223332 3555555555555555554 322  34       555555555


Q ss_pred             ccccccccccCCCCCCEEEecCCCCCCccccccC
Q 037308          211 RLKSLPSSLFKLKSLGVLNLGGCSNLQRLPECLG  244 (321)
Q Consensus       211 ~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~  244 (321)
                      +. .+|..+..+++|+.|++++|++.+.+|..++
T Consensus       219 l~-~lp~~l~~l~~L~~L~L~~N~l~~~~p~~l~  251 (571)
T 3cvr_A          219 IT-HIPENILSLDPTCTIILEDNPLSSRIRESLS  251 (571)
T ss_dssp             CC-CCCGGGGGSCTTEEEECCSSSCCHHHHHHHH
T ss_pred             ce-ecCHHHhcCCCCCEEEeeCCcCCCcCHHHHH
Confidence            43 3444444455555555555555555444443

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=99.75  E-value=6.4e-18  Score=138.60  Aligned_cols=154  Identities=18%  Similarity=0.170  Sum_probs=127.9

Q ss_pred             CCCCCCCccEEEccCCCCCcccCccccCcccCcEEecCCCCCccccccc-ccCCccEEEeccccccc-cChhhhccCCCC
Q 037308          125 LMPHLNKLVILNLRGSKSLKSLPSGIFNLEFLTKLDLSGCSKLKRLLEI-SSGNINWLFLRETAIEE-LPSSIERLLRLG  202 (321)
Q Consensus       125 ~~~~l~~L~~L~l~~n~~~~~~p~~l~~l~~L~~L~l~~~~~~~~~~~~-~~~~L~~L~l~~~~i~~-l~~~~~~l~~L~  202 (321)
                      ....+++|++|++++|.+ ..+| .+..+++|++|++++| .+..++.. .+++|++|++++|.++. .+..+..+++|+
T Consensus        39 ~~~~l~~L~~L~l~~n~i-~~l~-~l~~l~~L~~L~l~~n-~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~  115 (197)
T 4ezg_A           39 TEAQMNSLTYITLANINV-TDLT-GIEYAHNIKDLTINNI-HATNYNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLT  115 (197)
T ss_dssp             BHHHHHTCCEEEEESSCC-SCCT-TGGGCTTCSEEEEESC-CCSCCGGGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCC
T ss_pred             ChhhcCCccEEeccCCCc-cChH-HHhcCCCCCEEEccCC-CCCcchhhhcCCCCCEEEeECCccCcccChhhcCCCCCC
Confidence            346678999999999984 4667 4889999999999998 44444433 57899999999999987 566788899999


Q ss_pred             eEecccCcccccccccccCCCCCCEEEecCCCCCCccccccCCCCCCcEEEcccCCCcccchhhhccCCcCEEeccCCCC
Q 037308          203 HLDLSDCKRLKSLPSSLFKLKSLGVLNLGGCSNLQRLPECLGQLSSPIILNLAKTNVERIPESIIQLFVLRYLLLSYSER  282 (321)
Q Consensus       203 ~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~l~~~l~~l~~L~~L~l~~n~~  282 (321)
                      +|++++|.+.+..+..++.+++|+.|++++|...+.++ .+..+++|+.|++++|.++.++ .+..+++|++|++++| .
T Consensus       116 ~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~-~l~~l~~L~~L~l~~n~i~~~~-~l~~l~~L~~L~l~~N-~  192 (197)
T 4ezg_A          116 LLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIM-PLKTLPELKSLNIQFDGVHDYR-GIEDFPKLNQLYAFSQ-T  192 (197)
T ss_dssp             EEECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCCCCG-GGGGCSSCCEEECTTBCCCCCT-TGGGCSSCCEEEECBC--
T ss_pred             EEEecCCccCcHhHHHHhhCCCCCEEEccCCCCccccH-hhcCCCCCCEEECCCCCCcChH-HhccCCCCCEEEeeCc-c
Confidence            99999999888778888999999999999988566665 6888999999999999999887 7888999999999999 5


Q ss_pred             cc
Q 037308          283 IQ  284 (321)
Q Consensus       283 l~  284 (321)
                      ++
T Consensus       193 i~  194 (197)
T 4ezg_A          193 IG  194 (197)
T ss_dssp             --
T ss_pred             cC
Confidence            54

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A

Probab=99.74  E-value=4.8e-18  Score=161.89  Aligned_cols=189  Identities=21%  Similarity=0.205  Sum_probs=100.6

Q ss_pred             CcccEEEecCCCCCCCCCcCCcCceeEEeccCCcccccccCCCCCCChHhHHhhccccccccCCCCCCCCCCCCccEEEc
Q 037308           58 AEVKYFHWHGYPLKSLPSNLSAEKLVFLKVPYSDIEQLWNGEKHYSNLNQIINATCNKLIAKTPNPTLMPHLNKLVILNL  137 (321)
Q Consensus        58 ~~L~~l~l~~~~l~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~l~~L~~~l~l~~~~l~~~~~~~~~~~~l~~L~~L~l  137 (321)
                      ..+..+.+..+.+..+.....+++|+.|++++|.+..++ .+..+++|+. |+++.|.+. .++   .+..+++|+.|++
T Consensus        21 ~~l~~l~l~~~~i~~~~~~~~L~~L~~L~l~~n~i~~l~-~l~~l~~L~~-L~Ls~N~l~-~~~---~l~~l~~L~~L~L   94 (605)
T 1m9s_A           21 AETIKDNLKKKSVTDAVTQNELNSIDQIIANNSDIKSVQ-GIQYLPNVTK-LFLNGNKLT-DIK---PLTNLKNLGWLFL   94 (605)
T ss_dssp             HHHHHHHTTCSCTTSEECHHHHTTCCCCBCTTCCCCCCT-TGGGCTTCCE-EECTTSCCC-CCG---GGGGCTTCCEEEC
T ss_pred             HHHHHHhccCCCcccccchhcCCCCCEEECcCCCCCCCh-HHccCCCCCE-EEeeCCCCC-CCh---hhccCCCCCEEEC
Confidence            444455555555555444446777888888877777653 4556666666 666666665 443   2556666666666


Q ss_pred             cCCCCCcccCccccCcccCcEEecCCCCCccccccc-ccCCccEEEeccccccccChhhhccCCCCeEecccCccccccc
Q 037308          138 RGSKSLKSLPSGIFNLEFLTKLDLSGCSKLKRLLEI-SSGNINWLFLRETAIEELPSSIERLLRLGHLDLSDCKRLKSLP  216 (321)
Q Consensus       138 ~~n~~~~~~p~~l~~l~~L~~L~l~~~~~~~~~~~~-~~~~L~~L~l~~~~i~~l~~~~~~l~~L~~L~l~~n~~~~~~~  216 (321)
                      ++|.+. .+| .+..+++|+.|++++|.... ++.. .+++|+.|++++|.++++ ..+..+++|+.|++++|.+.+..|
T Consensus        95 s~N~l~-~l~-~l~~l~~L~~L~Ls~N~l~~-l~~l~~l~~L~~L~Ls~N~l~~l-~~l~~l~~L~~L~Ls~N~l~~~~~  170 (605)
T 1m9s_A           95 DENKIK-DLS-SLKDLKKLKSLSLEHNGISD-INGLVHLPQLESLYLGNNKITDI-TVLSRLTKLDTLSLEDNQISDIVP  170 (605)
T ss_dssp             CSSCCC-CCT-TSTTCTTCCEEECTTSCCCC-CGGGGGCTTCSEEECCSSCCCCC-GGGGSCTTCSEEECCSSCCCCCGG
T ss_pred             cCCCCC-CCh-hhccCCCCCEEEecCCCCCC-CccccCCCccCEEECCCCccCCc-hhhcccCCCCEEECcCCcCCCchh
Confidence            666532 333 35556666666666654322 2222 344555555555555554 234445555555555555444333


Q ss_pred             ccccCCCCCCEEEecCCCCCCccccccCCCCCCcEEEcccCCCc
Q 037308          217 SSLFKLKSLGVLNLGGCSNLQRLPECLGQLSSPIILNLAKTNVE  260 (321)
Q Consensus       217 ~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~  260 (321)
                        +..+++|+.|++++|.+.+.  ..+..+++|+.|++++|.+.
T Consensus       171 --l~~l~~L~~L~Ls~N~i~~l--~~l~~l~~L~~L~L~~N~l~  210 (605)
T 1m9s_A          171 --LAGLTKLQNLYLSKNHISDL--RALAGLKNLDVLELFSQECL  210 (605)
T ss_dssp             --GTTCTTCCEEECCSSCCCBC--GGGTTCTTCSEEECCSEEEE
T ss_pred             --hccCCCCCEEECcCCCCCCC--hHHccCCCCCEEEccCCcCc
Confidence              44555555555555444332  23444555555555555544

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}

Probab=99.74  E-value=1.1e-19  Score=163.17  Aligned_cols=244  Identities=15%  Similarity=0.066  Sum_probs=171.7

Q ss_pred             EEEEeecCCCCccccceeccCCCCc-CcccEEEecCCCCCCCCC-----cC-CcC-ceeEEeccCCcccccc-cCCCCC-
Q 037308           33 FLKFYSSSFNGENKCKVSYLQDPRF-AEVKYFHWHGYPLKSLPS-----NL-SAE-KLVFLKVPYSDIEQLW-NGEKHY-  102 (321)
Q Consensus        33 ~L~l~~n~~~~~~~~~~~~~~~l~~-~~L~~l~l~~~~l~~~~~-----~~-~l~-~L~~L~l~~~~l~~~~-~~~~~l-  102 (321)
                      +++++.|.+++..+      ..+.. .+|++|++++|.+...+.     .+ .++ +|++|++++|.++... ..+..+ 
T Consensus         2 ~~~ls~n~~~~~~~------~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l   75 (362)
T 3goz_A            2 NYKLTLHPGSNPVE------EFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQIL   75 (362)
T ss_dssp             EEECCCCTTCCHHH------HHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHH
T ss_pred             ccccccccchHHHH------HHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHH
Confidence            45677776554322      23344 669999999999988764     23 677 8999999999998752 222222 


Q ss_pred             ----CChHhHHhhccccccccCCCCCC----CCCC-CCccEEEccCCCCCcccCccc----cC-cccCcEEecCCCCCcc
Q 037308          103 ----SNLNQIINATCNKLIAKTPNPTL----MPHL-NKLVILNLRGSKSLKSLPSGI----FN-LEFLTKLDLSGCSKLK  168 (321)
Q Consensus       103 ----~~L~~~l~l~~~~l~~~~~~~~~----~~~l-~~L~~L~l~~n~~~~~~p~~l----~~-l~~L~~L~l~~~~~~~  168 (321)
                          ++|++ ++++.|.+++..+.  .    +..+ ++|++|++++|.+....+..+    .. .++|++|++++|....
T Consensus        76 ~~~~~~L~~-L~Ls~n~l~~~~~~--~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~  152 (362)
T 3goz_A           76 AAIPANVTS-LNLSGNFLSYKSSD--ELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGI  152 (362)
T ss_dssp             HTSCTTCCE-EECCSSCGGGSCHH--HHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGG
T ss_pred             hccCCCccE-EECcCCcCChHHHH--HHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCH
Confidence                78888 99999999833321  2    3344 799999999998654433332    33 3699999999986543


Q ss_pred             c----cccc--cc-CCccEEEeccccccccCh-----hhhcc-CCCCeEecccCccccc----ccccccC-CCCCCEEEe
Q 037308          169 R----LLEI--SS-GNINWLFLRETAIEELPS-----SIERL-LRLGHLDLSDCKRLKS----LPSSLFK-LKSLGVLNL  230 (321)
Q Consensus       169 ~----~~~~--~~-~~L~~L~l~~~~i~~l~~-----~~~~l-~~L~~L~l~~n~~~~~----~~~~~~~-l~~L~~L~l  230 (321)
                      .    ++..  .. ++|++|++++|.+++...     .+..+ ++|++|++++|.+.+.    ++..+.. .++|+.|++
T Consensus       153 ~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~L  232 (362)
T 3goz_A          153 KSSDELIQILAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNL  232 (362)
T ss_dssp             SCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEEC
T ss_pred             HHHHHHHHHHhcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEEC
Confidence            2    2221  22 489999999999987553     34445 5999999999997763    4444555 459999999


Q ss_pred             cCCCCCCccc----cccCCCCCCcEEEcccCCCcc--------cchhhhccCCcCEEeccCCCCcccc
Q 037308          231 GGCSNLQRLP----ECLGQLSSPIILNLAKTNVER--------IPESIIQLFVLRYLLLSYSERIQSV  286 (321)
Q Consensus       231 ~~~~~~~~~~----~~~~~~~~L~~L~l~~n~l~~--------l~~~l~~l~~L~~L~l~~n~~l~~~  286 (321)
                      ++|.+....+    ..+..+++|+.|++++|.+..        ++..+..++.|++|++++| .+...
T Consensus       233 s~N~l~~~~~~~l~~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N-~l~~~  299 (362)
T 3goz_A          233 CLNCLHGPSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGK-EIHPS  299 (362)
T ss_dssp             CSSCCCCCCHHHHHHTTTTTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTTCCEEEEECTTSC-BCCGG
T ss_pred             cCCCCCcHHHHHHHHHHhcCCCccEEEeccCCccccCHHHHHHHHHHhccCCceEEEecCCC-cCCCc
Confidence            9998876543    445778999999999998443        3334567788999999999 55543

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=99.73  E-value=2.6e-17  Score=143.25  Aligned_cols=168  Identities=20%  Similarity=0.188  Sum_probs=131.8

Q ss_pred             CcccEEEecCCCCCCCCCcCCcCceeEEeccCCcccccccCCCCCCChHhHHhhccccccccCCCCCCCCCCCCccEEEc
Q 037308           58 AEVKYFHWHGYPLKSLPSNLSAEKLVFLKVPYSDIEQLWNGEKHYSNLNQIINATCNKLIAKTPNPTLMPHLNKLVILNL  137 (321)
Q Consensus        58 ~~L~~l~l~~~~l~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~l~~L~~~l~l~~~~l~~~~~~~~~~~~l~~L~~L~l  137 (321)
                      ++|+.+++++|.+..++....+++|++|++++|+++.++. +..+++|+. ++++.|.++ .++   .+..+++|++|++
T Consensus        46 ~~L~~L~l~~~~i~~~~~~~~l~~L~~L~L~~n~l~~~~~-l~~l~~L~~-L~l~~n~l~-~~~---~l~~l~~L~~L~L  119 (291)
T 1h6t_A           46 NSIDQIIANNSDIKSVQGIQYLPNVTKLFLNGNKLTDIKP-LANLKNLGW-LFLDENKVK-DLS---SLKDLKKLKSLSL  119 (291)
T ss_dssp             HTCCEEECTTSCCCCCTTGGGCTTCCEEECCSSCCCCCGG-GTTCTTCCE-EECCSSCCC-CGG---GGTTCTTCCEEEC
T ss_pred             CcccEEEccCCCcccChhHhcCCCCCEEEccCCccCCCcc-cccCCCCCE-EECCCCcCC-CCh---hhccCCCCCEEEC
Confidence            6777777877777777654467788888888888777655 677777777 788777777 554   5778889999999


Q ss_pred             cCCCCCcccCccccCcccCcEEecCCCCCccccccc-ccCCccEEEeccccccccChhhhccCCCCeEecccCccccccc
Q 037308          138 RGSKSLKSLPSGIFNLEFLTKLDLSGCSKLKRLLEI-SSGNINWLFLRETAIEELPSSIERLLRLGHLDLSDCKRLKSLP  216 (321)
Q Consensus       138 ~~n~~~~~~p~~l~~l~~L~~L~l~~~~~~~~~~~~-~~~~L~~L~l~~~~i~~l~~~~~~l~~L~~L~l~~n~~~~~~~  216 (321)
                      ++|.+. .++ .+..+++|+.|++++|.... ++.. .+++|+.|++++|.+++++. +..+++|++|++++|.+.+ ++
T Consensus       120 ~~n~i~-~~~-~l~~l~~L~~L~l~~n~l~~-~~~l~~l~~L~~L~L~~N~l~~~~~-l~~l~~L~~L~L~~N~i~~-l~  194 (291)
T 1h6t_A          120 EHNGIS-DIN-GLVHLPQLESLYLGNNKITD-ITVLSRLTKLDTLSLEDNQISDIVP-LAGLTKLQNLYLSKNHISD-LR  194 (291)
T ss_dssp             TTSCCC-CCG-GGGGCTTCCEEECCSSCCCC-CGGGGGCTTCSEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCB-CG
T ss_pred             CCCcCC-CCh-hhcCCCCCCEEEccCCcCCc-chhhccCCCCCEEEccCCccccchh-hcCCCccCEEECCCCcCCC-Ch
Confidence            998844 344 47788999999999876443 3332 57899999999999999876 8899999999999998765 44


Q ss_pred             ccccCCCCCCEEEecCCCCCC
Q 037308          217 SSLFKLKSLGVLNLGGCSNLQ  237 (321)
Q Consensus       217 ~~~~~l~~L~~L~l~~~~~~~  237 (321)
                       .+..+++|+.|++++|.+..
T Consensus       195 -~l~~l~~L~~L~l~~n~i~~  214 (291)
T 1h6t_A          195 -ALAGLKNLDVLELFSQECLN  214 (291)
T ss_dssp             -GGTTCTTCSEEEEEEEEEEC
T ss_pred             -hhccCCCCCEEECcCCcccC
Confidence             38899999999999987654

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A

Probab=99.73  E-value=5.1e-18  Score=161.70  Aligned_cols=169  Identities=20%  Similarity=0.184  Sum_probs=132.9

Q ss_pred             CcccEEEecCCCCCCCCCcCCcCceeEEeccCCcccccccCCCCCCChHhHHhhccccccccCCCCCCCCCCCCccEEEc
Q 037308           58 AEVKYFHWHGYPLKSLPSNLSAEKLVFLKVPYSDIEQLWNGEKHYSNLNQIINATCNKLIAKTPNPTLMPHLNKLVILNL  137 (321)
Q Consensus        58 ~~L~~l~l~~~~l~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~l~~L~~~l~l~~~~l~~~~~~~~~~~~l~~L~~L~l  137 (321)
                      .+|+.|++++|.+..++....+++|+.|++++|.+..++. +..+++|+. |+++.|.+. .++   .+..+++|+.|++
T Consensus        43 ~~L~~L~l~~n~i~~l~~l~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~-L~Ls~N~l~-~l~---~l~~l~~L~~L~L  116 (605)
T 1m9s_A           43 NSIDQIIANNSDIKSVQGIQYLPNVTKLFLNGNKLTDIKP-LTNLKNLGW-LFLDENKIK-DLS---SLKDLKKLKSLSL  116 (605)
T ss_dssp             TTCCCCBCTTCCCCCCTTGGGCTTCCEEECTTSCCCCCGG-GGGCTTCCE-EECCSSCCC-CCT---TSTTCTTCCEEEC
T ss_pred             CCCCEEECcCCCCCCChHHccCCCCCEEEeeCCCCCCChh-hccCCCCCE-EECcCCCCC-CCh---hhccCCCCCEEEe
Confidence            7888888888888888765578889999999888888765 778888888 888888887 554   5788888999999


Q ss_pred             cCCCCCcccCccccCcccCcEEecCCCCCccccccc-ccCCccEEEeccccccccChhhhccCCCCeEecccCccccccc
Q 037308          138 RGSKSLKSLPSGIFNLEFLTKLDLSGCSKLKRLLEI-SSGNINWLFLRETAIEELPSSIERLLRLGHLDLSDCKRLKSLP  216 (321)
Q Consensus       138 ~~n~~~~~~p~~l~~l~~L~~L~l~~~~~~~~~~~~-~~~~L~~L~l~~~~i~~l~~~~~~l~~L~~L~l~~n~~~~~~~  216 (321)
                      ++|.+. .++ .+..+++|+.|++++|.... ++.. .+++|+.|++++|.+++++. +..+++|+.|++++|.+.+.  
T Consensus       117 s~N~l~-~l~-~l~~l~~L~~L~Ls~N~l~~-l~~l~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N~i~~l--  190 (605)
T 1m9s_A          117 EHNGIS-DIN-GLVHLPQLESLYLGNNKITD-ITVLSRLTKLDTLSLEDNQISDIVP-LAGLTKLQNLYLSKNHISDL--  190 (605)
T ss_dssp             TTSCCC-CCG-GGGGCTTCSEEECCSSCCCC-CGGGGSCTTCSEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCBC--
T ss_pred             cCCCCC-CCc-cccCCCccCEEECCCCccCC-chhhcccCCCCEEECcCCcCCCchh-hccCCCCCEEECcCCCCCCC--
Confidence            988744 344 37788889999998876443 3332 57888899999888888766 78888899999998886653  


Q ss_pred             ccccCCCCCCEEEecCCCCCCc
Q 037308          217 SSLFKLKSLGVLNLGGCSNLQR  238 (321)
Q Consensus       217 ~~~~~l~~L~~L~l~~~~~~~~  238 (321)
                      ..+..+++|+.|++++|.+...
T Consensus       191 ~~l~~l~~L~~L~L~~N~l~~~  212 (605)
T 1m9s_A          191 RALAGLKNLDVLELFSQECLNK  212 (605)
T ss_dssp             GGGTTCTTCSEEECCSEEEECC
T ss_pred             hHHccCCCCCEEEccCCcCcCC
Confidence            3478888899999888776553

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=99.71  E-value=7.4e-17  Score=133.29  Aligned_cols=176  Identities=18%  Similarity=0.132  Sum_probs=84.5

Q ss_pred             cEEEecCCCCCCCCCcCCcCceeEEeccCCcccccccCCCCCCChHhHHhhccccccccCCCCCCCCCCCCccEEEccCC
Q 037308           61 KYFHWHGYPLKSLPSNLSAEKLVFLKVPYSDIEQLWNGEKHYSNLNQIINATCNKLIAKTPNPTLMPHLNKLVILNLRGS  140 (321)
Q Consensus        61 ~~l~l~~~~l~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~l~~L~~~l~l~~~~l~~~~~~~~~~~~l~~L~~L~l~~n  140 (321)
                      +.++..++.+..+|..+ .++|++|++++|.++.++..                          .+..+++|++|++++|
T Consensus        10 ~~v~c~~~~l~~~p~~~-~~~l~~L~l~~n~l~~~~~~--------------------------~~~~l~~L~~L~l~~n   62 (208)
T 2o6s_A           10 TTVECYSQGRTSVPTGI-PAQTTYLDLETNSLKSLPNG--------------------------VFDELTSLTQLYLGGN   62 (208)
T ss_dssp             TEEECCSSCCSSCCSCC-CTTCSEEECCSSCCCCCCTT--------------------------TTTTCTTCSEEECCSS
T ss_pred             CEEEecCCCccCCCCCC-CCCCcEEEcCCCccCcCChh--------------------------hhcccccCcEEECCCC
Confidence            34555556666665443 34666666666666544322                          2333444444444444


Q ss_pred             CCCcccCccccCcccCcEEecCCCCCccccccc--ccCCccEEEeccccccccChh-hhccCCCCeEecccCcccccccc
Q 037308          141 KSLKSLPSGIFNLEFLTKLDLSGCSKLKRLLEI--SSGNINWLFLRETAIEELPSS-IERLLRLGHLDLSDCKRLKSLPS  217 (321)
Q Consensus       141 ~~~~~~p~~l~~l~~L~~L~l~~~~~~~~~~~~--~~~~L~~L~l~~~~i~~l~~~-~~~l~~L~~L~l~~n~~~~~~~~  217 (321)
                      .+....+..+..+++|++|++++|...+..+..  .+++|++|++++|.+++++.. +..+++|++|++++|.+.+..+.
T Consensus        63 ~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~  142 (208)
T 2o6s_A           63 KLQSLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDG  142 (208)
T ss_dssp             CCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTT
T ss_pred             ccCccChhhcCCCCCcCEEECCCCcCCccCHhHhcCccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCCccceeCHH
Confidence            422222222333444444444443211111100  133444444444444444432 45556666666666665544444


Q ss_pred             cccCCCCCCEEEecCCCCCCccccccCCCCCCcEEEcccCCCc-ccchhhhccC
Q 037308          218 SLFKLKSLGVLNLGGCSNLQRLPECLGQLSSPIILNLAKTNVE-RIPESIIQLF  270 (321)
Q Consensus       218 ~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~-~l~~~l~~l~  270 (321)
                      .+..+++|+.|++++|.+.+       .+++|+.|+++.|.++ .+|..++.++
T Consensus       143 ~~~~l~~L~~L~l~~N~~~~-------~~~~l~~L~~~~n~~~g~ip~~~~~l~  189 (208)
T 2o6s_A          143 VFDRLTSLQYIWLHDNPWDC-------TCPGIRYLSEWINKHSGVVRNSAGSVA  189 (208)
T ss_dssp             TTTTCTTCCEEECCSCCBCC-------CTTTTHHHHHHHHHCTTTBBCTTSSBC
T ss_pred             HhccCCCccEEEecCCCeec-------CCCCHHHHHHHHHhCCceeeccCcccc
Confidence            45566666666666654332       3345666666666655 5555554443

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=99.70  E-value=5.1e-17  Score=133.21  Aligned_cols=148  Identities=16%  Similarity=0.124  Sum_probs=77.5

Q ss_pred             CcccEEEecCCCCCCCCCcCCcCceeEEeccCCcccccccCCCCCCChHhHHhhccccccccCCCCCCCCCCCCccEEEc
Q 037308           58 AEVKYFHWHGYPLKSLPSNLSAEKLVFLKVPYSDIEQLWNGEKHYSNLNQIINATCNKLIAKTPNPTLMPHLNKLVILNL  137 (321)
Q Consensus        58 ~~L~~l~l~~~~l~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~l~~L~~~l~l~~~~l~~~~~~~~~~~~l~~L~~L~l  137 (321)
                      ++|+.+++++|.+..++....+++|++|++++|.+..+ .                           .+..+++|++|++
T Consensus        44 ~~L~~L~l~~n~i~~l~~l~~l~~L~~L~l~~n~~~~~-~---------------------------~l~~l~~L~~L~l   95 (197)
T 4ezg_A           44 NSLTYITLANINVTDLTGIEYAHNIKDLTINNIHATNY-N---------------------------PISGLSNLERLRI   95 (197)
T ss_dssp             HTCCEEEEESSCCSCCTTGGGCTTCSEEEEESCCCSCC-G---------------------------GGTTCTTCCEEEE
T ss_pred             CCccEEeccCCCccChHHHhcCCCCCEEEccCCCCCcc-h---------------------------hhhcCCCCCEEEe
Confidence            55666666666655555333555666666665544432 1                           2334444555555


Q ss_pred             cCCCCCcccCccccCcccCcEEecCCCCCccccccc--ccCCccEEEecccc-ccccChhhhccCCCCeEecccCccccc
Q 037308          138 RGSKSLKSLPSGIFNLEFLTKLDLSGCSKLKRLLEI--SSGNINWLFLRETA-IEELPSSIERLLRLGHLDLSDCKRLKS  214 (321)
Q Consensus       138 ~~n~~~~~~p~~l~~l~~L~~L~l~~~~~~~~~~~~--~~~~L~~L~l~~~~-i~~l~~~~~~l~~L~~L~l~~n~~~~~  214 (321)
                      ++|.+....+..++.+++|++|++++|......+..  .+++|++|++++|. ++.++ .+..+++|++|++++|.+.+ 
T Consensus        96 ~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~-~l~~l~~L~~L~l~~n~i~~-  173 (197)
T 4ezg_A           96 MGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIM-PLKTLPELKSLNIQFDGVHD-  173 (197)
T ss_dssp             ECTTCBGGGSCCCTTCTTCCEEECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCCCCG-GGGGCSSCCEEECTTBCCCC-
T ss_pred             ECCccCcccChhhcCCCCCCEEEecCCccCcHhHHHHhhCCCCCEEEccCCCCccccH-hhcCCCCCCEEECCCCCCcC-
Confidence            544433333444444455555555544333222211  24455555555554 55555 46667777777777777554 


Q ss_pred             ccccccCCCCCCEEEecCCCCC
Q 037308          215 LPSSLFKLKSLGVLNLGGCSNL  236 (321)
Q Consensus       215 ~~~~~~~l~~L~~L~l~~~~~~  236 (321)
                      ++ .+..+++|+.|++++|++.
T Consensus       174 ~~-~l~~l~~L~~L~l~~N~i~  194 (197)
T 4ezg_A          174 YR-GIEDFPKLNQLYAFSQTIG  194 (197)
T ss_dssp             CT-TGGGCSSCCEEEECBC---
T ss_pred             hH-HhccCCCCCEEEeeCcccC
Confidence            32 4667777777777776543

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=99.70  E-value=1.1e-16  Score=137.37  Aligned_cols=171  Identities=21%  Similarity=0.219  Sum_probs=86.8

Q ss_pred             cCceeEEeccCCcccccccCCCCCCChHhHHhhccccccccCCCCCCCCCCCCccEEEccCCCCCcccCccccCcccCcE
Q 037308           79 AEKLVFLKVPYSDIEQLWNGEKHYSNLNQIINATCNKLIAKTPNPTLMPHLNKLVILNLRGSKSLKSLPSGIFNLEFLTK  158 (321)
Q Consensus        79 l~~L~~L~l~~~~l~~~~~~~~~l~~L~~~l~l~~~~l~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~l~~l~~L~~  158 (321)
                      +.+++.++++++.++.++ .+..+++++. +++++|.++ .++   .+..+++|++|++++|.+ ..+++ +..+++|++
T Consensus        18 l~~l~~l~l~~~~i~~~~-~~~~l~~L~~-L~l~~n~i~-~l~---~l~~l~~L~~L~L~~N~i-~~~~~-l~~l~~L~~   89 (263)
T 1xeu_A           18 LANAVKQNLGKQSVTDLV-SQKELSGVQN-FNGDNSNIQ-SLA---GMQFFTNLKELHLSHNQI-SDLSP-LKDLTKLEE   89 (263)
T ss_dssp             HHHHHHHHHTCSCTTSEE-CHHHHTTCSE-EECTTSCCC-CCT---TGGGCTTCCEEECCSSCC-CCCGG-GTTCSSCCE
T ss_pred             HHHHHHHHhcCCCccccc-chhhcCcCcE-EECcCCCcc-cch---HHhhCCCCCEEECCCCcc-CCChh-hccCCCCCE
Confidence            444555555555555543 3344555555 555555555 443   345555666666665552 23333 555555666


Q ss_pred             EecCCCCCcccccccccCCccEEEeccccccccChhhhccCCCCeEecccCcccccccccccCCCCCCEEEecCCCCCCc
Q 037308          159 LDLSGCSKLKRLLEISSGNINWLFLRETAIEELPSSIERLLRLGHLDLSDCKRLKSLPSSLFKLKSLGVLNLGGCSNLQR  238 (321)
Q Consensus       159 L~l~~~~~~~~~~~~~~~~L~~L~l~~~~i~~l~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~~~~~~~  238 (321)
                      |++++|.. +.++....++|++|++++|.+++++ .+..+++|++|++++|.+.+. + .++.+++|+.|++++|.+.+.
T Consensus        90 L~L~~N~l-~~l~~~~~~~L~~L~L~~N~l~~~~-~l~~l~~L~~L~Ls~N~i~~~-~-~l~~l~~L~~L~L~~N~i~~~  165 (263)
T 1xeu_A           90 LSVNRNRL-KNLNGIPSACLSRLFLDNNELRDTD-SLIHLKNLEILSIRNNKLKSI-V-MLGFLSKLEVLDLHGNEITNT  165 (263)
T ss_dssp             EECCSSCC-SCCTTCCCSSCCEEECCSSCCSBSG-GGTTCTTCCEEECTTSCCCBC-G-GGGGCTTCCEEECTTSCCCBC
T ss_pred             EECCCCcc-CCcCccccCcccEEEccCCccCCCh-hhcCcccccEEECCCCcCCCC-h-HHccCCCCCEEECCCCcCcch
Confidence            66655432 2222221245555555555555544 245555555555555554432 2 345555555555555544443


Q ss_pred             cccccCCCCCCcEEEcccCCCcccc
Q 037308          239 LPECLGQLSSPIILNLAKTNVERIP  263 (321)
Q Consensus       239 ~~~~~~~~~~L~~L~l~~n~l~~l~  263 (321)
                        ..+..+++|+.|++++|.++..|
T Consensus       166 --~~l~~l~~L~~L~l~~N~~~~~~  188 (263)
T 1xeu_A          166 --GGLTRLKKVNWIDLTGQKCVNEP  188 (263)
T ss_dssp             --TTSTTCCCCCEEEEEEEEEECCC
T ss_pred             --HHhccCCCCCEEeCCCCcccCCc
Confidence              34455555555555555554333

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=99.70  E-value=4.3e-16  Score=129.96  Aligned_cols=147  Identities=19%  Similarity=0.149  Sum_probs=97.1

Q ss_pred             HhhccccccccCCCCCCCCCCCCccEEEccCCCCCcccC-ccccCcccCcEEecCCCCCccccccc--ccCCccEEEecc
Q 037308          109 INATCNKLIAKTPNPTLMPHLNKLVILNLRGSKSLKSLP-SGIFNLEFLTKLDLSGCSKLKRLLEI--SSGNINWLFLRE  185 (321)
Q Consensus       109 l~l~~~~l~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p-~~l~~l~~L~~L~l~~~~~~~~~~~~--~~~~L~~L~l~~  185 (321)
                      ++++.+.++ .+|.  .+  ...+++|++++|.+.+..+ ..|..+++|+.|++++|...+..+..  .+++|++|++++
T Consensus        16 l~~s~n~l~-~iP~--~~--~~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~   90 (220)
T 2v70_A           16 VDCSNQKLN-KIPE--HI--PQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTS   90 (220)
T ss_dssp             EECCSSCCS-SCCS--CC--CTTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred             eEeCCCCcc-cCcc--CC--CCCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCC
Confidence            677777777 6664  33  3456788888887554433 34677778888888776533322211  456677777777


Q ss_pred             ccccccChh-hhccCCCCeEecccCcccccccccccCCCCCCEEEecCCCCCCccccccCCCCCCcEEEcccCCCc
Q 037308          186 TAIEELPSS-IERLLRLGHLDLSDCKRLKSLPSSLFKLKSLGVLNLGGCSNLQRLPECLGQLSSPIILNLAKTNVE  260 (321)
Q Consensus       186 ~~i~~l~~~-~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~  260 (321)
                      |.++.++.. +..+++|++|++++|.+.+..|..+..+++|+.|++++|.+.+..|..+..+++|+.|++++|.++
T Consensus        91 N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~  166 (220)
T 2v70_A           91 NRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPFN  166 (220)
T ss_dssp             SCCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCEE
T ss_pred             CccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCCc
Confidence            777766543 666777777777777766666666677777777777777666666666777777777777777765

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=99.69  E-value=3.1e-16  Score=129.50  Aligned_cols=167  Identities=18%  Similarity=0.123  Sum_probs=124.1

Q ss_pred             HhhccccccccCCCCCCCCCCCCccEEEccCCCCCcccCccccCcccCcEEecCCCCCccccccc---ccCCccEEEecc
Q 037308          109 INATCNKLIAKTPNPTLMPHLNKLVILNLRGSKSLKSLPSGIFNLEFLTKLDLSGCSKLKRLLEI---SSGNINWLFLRE  185 (321)
Q Consensus       109 l~l~~~~l~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~l~~l~~L~~L~l~~~~~~~~~~~~---~~~~L~~L~l~~  185 (321)
                      ++.+.+.++ .+|.  .+  .++|++|++++|.+.+..+..++.+++|++|++++|... .++..   .+++|++|++++
T Consensus        12 v~c~~~~l~-~~p~--~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~Ls~   85 (208)
T 2o6s_A           12 VECYSQGRT-SVPT--GI--PAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQ-SLPNGVFNKLTSLTYLNLST   85 (208)
T ss_dssp             EECCSSCCS-SCCS--CC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCC-CCCTTTTTTCTTCCEEECCS
T ss_pred             EEecCCCcc-CCCC--CC--CCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccC-ccChhhcCCCCCcCEEECCC
Confidence            445555565 5553  33  468999999999866554556788999999999987544 44332   467888999998


Q ss_pred             ccccccChh-hhccCCCCeEecccCcccccccccccCCCCCCEEEecCCCCCCccccccCCCCCCcEEEcccCCCcccch
Q 037308          186 TAIEELPSS-IERLLRLGHLDLSDCKRLKSLPSSLFKLKSLGVLNLGGCSNLQRLPECLGQLSSPIILNLAKTNVERIPE  264 (321)
Q Consensus       186 ~~i~~l~~~-~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~l~~  264 (321)
                      |.+++++.. +..+++|++|++++|.+.+..+..+..+++|+.|++++|.+.+..+..+..+++|+.|++++|.+.    
T Consensus        86 n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~----  161 (208)
T 2o6s_A           86 NQLQSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWD----  161 (208)
T ss_dssp             SCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBC----
T ss_pred             CcCCccCHhHhcCccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCccEEEecCCCee----
Confidence            888887754 678888999999888877766666788888999999888777666556788888999998888655    


Q ss_pred             hhhccCCcCEEeccCCCCccccc
Q 037308          265 SIIQLFVLRYLLLSYSERIQSVS  287 (321)
Q Consensus       265 ~l~~l~~L~~L~l~~n~~l~~~~  287 (321)
                        +.++.|++|+++.|..-..+|
T Consensus       162 --~~~~~l~~L~~~~n~~~g~ip  182 (208)
T 2o6s_A          162 --CTCPGIRYLSEWINKHSGVVR  182 (208)
T ss_dssp             --CCTTTTHHHHHHHHHCTTTBB
T ss_pred             --cCCCCHHHHHHHHHhCCceee
Confidence              345677778888875555654

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=99.68  E-value=7.5e-16  Score=128.49  Aligned_cols=147  Identities=20%  Similarity=0.196  Sum_probs=104.5

Q ss_pred             HhhccccccccCCCCCCCCCCCCccEEEccCCCCCcccCccccCcccCcEEecCCCCCccccccc--ccCCccEEEeccc
Q 037308          109 INATCNKLIAKTPNPTLMPHLNKLVILNLRGSKSLKSLPSGIFNLEFLTKLDLSGCSKLKRLLEI--SSGNINWLFLRET  186 (321)
Q Consensus       109 l~l~~~~l~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~l~~l~~L~~L~l~~~~~~~~~~~~--~~~~L~~L~l~~~  186 (321)
                      ++++.+.++ .+|.  .+.  ++++.|++++|.+....+..|..+++|+.|++++|......+..  .+++|++|++++|
T Consensus        16 v~c~~~~l~-~iP~--~l~--~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N   90 (220)
T 2v9t_B           16 VDCRGKGLT-EIPT--NLP--ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGN   90 (220)
T ss_dssp             EECTTSCCS-SCCS--SCC--TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSS
T ss_pred             EEcCCCCcC-cCCC--ccC--cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCC
Confidence            666777777 7765  443  68888999888865554556788888888888887644433332  4667777777777


Q ss_pred             cccccChh-hhccCCCCeEecccCcccccccccccCCCCCCEEEecCCCCCCccccccCCCCCCcEEEcccCCCc
Q 037308          187 AIEELPSS-IERLLRLGHLDLSDCKRLKSLPSSLFKLKSLGVLNLGGCSNLQRLPECLGQLSSPIILNLAKTNVE  260 (321)
Q Consensus       187 ~i~~l~~~-~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~  260 (321)
                      .++.+|.. +..+++|++|++++|.+.+..+..+..+++|+.|++++|.+.+..+..+..+++|+.|++++|.+.
T Consensus        91 ~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~  165 (220)
T 2v9t_B           91 KITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPFI  165 (220)
T ss_dssp             CCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCEE
T ss_pred             cCCccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCCcC
Confidence            77777654 566777777777777777666667777777777777777776666666777777777777777765

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=99.68  E-value=4.8e-16  Score=139.44  Aligned_cols=172  Identities=16%  Similarity=0.155  Sum_probs=94.1

Q ss_pred             EEeccCCcccccccCCCCCCChHhHHhhccccccccCCCCCCCC-CCCCccEEEccCCCCCcccCccccCcccCcEEecC
Q 037308           84 FLKVPYSDIEQLWNGEKHYSNLNQIINATCNKLIAKTPNPTLMP-HLNKLVILNLRGSKSLKSLPSGIFNLEFLTKLDLS  162 (321)
Q Consensus        84 ~L~l~~~~l~~~~~~~~~l~~L~~~l~l~~~~l~~~~~~~~~~~-~l~~L~~L~l~~n~~~~~~p~~l~~l~~L~~L~l~  162 (321)
                      .+++++++++.++..+.  +.++. |+++.|.++ .++. ..+. .+++|++|++++|.+....+..|..++        
T Consensus        22 ~l~c~~~~l~~iP~~~~--~~l~~-L~Ls~N~l~-~l~~-~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~--------   88 (361)
T 2xot_A           22 ILSCSKQQLPNVPQSLP--SYTAL-LDLSHNNLS-RLRA-EWTPTRLTNLHSLLLSHNHLNFISSEAFVPVP--------   88 (361)
T ss_dssp             EEECCSSCCSSCCSSCC--TTCSE-EECCSSCCC-EECT-TSSSSCCTTCCEEECCSSCCCEECTTTTTTCT--------
T ss_pred             EEEeCCCCcCccCccCC--CCCCE-EECCCCCCC-ccCh-hhhhhcccccCEEECCCCcCCccChhhccCCC--------
Confidence            45555555555444321  12333 455555554 2221 0233 445555555555543333233344444        


Q ss_pred             CCCCcccccccccCCccEEEeccccccccCh-hhhccCCCCeEecccCcccccccccccCCCCCCEEEecCCCCCCcccc
Q 037308          163 GCSKLKRLLEISSGNINWLFLRETAIEELPS-SIERLLRLGHLDLSDCKRLKSLPSSLFKLKSLGVLNLGGCSNLQRLPE  241 (321)
Q Consensus       163 ~~~~~~~~~~~~~~~L~~L~l~~~~i~~l~~-~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~  241 (321)
                                    +|++|++++|.++.++. .+..+++|++|++++|.+....+..+..+++|+.|++++|.+.+..+.
T Consensus        89 --------------~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~  154 (361)
T 2xot_A           89 --------------NLRYLDLSSNHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVE  154 (361)
T ss_dssp             --------------TCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGG
T ss_pred             --------------CCCEEECCCCcCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCeeCHH
Confidence                          45555555555555543 356667777777777776666666677777777777777665553333


Q ss_pred             cc---CCCCCCcEEEcccCCCcccc-hhhhccCC--cCEEeccCCCC
Q 037308          242 CL---GQLSSPIILNLAKTNVERIP-ESIIQLFV--LRYLLLSYSER  282 (321)
Q Consensus       242 ~~---~~~~~L~~L~l~~n~l~~l~-~~l~~l~~--L~~L~l~~n~~  282 (321)
                      .+   ..+++|+.|++++|+++.+| ..+..++.  ++.|++.+|+.
T Consensus       155 ~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~~~l~~l~l~~N~~  201 (361)
T 2xot_A          155 LIKDGNKLPKLMLLDLSSNKLKKLPLTDLQKLPAWVKNGLYLHNNPL  201 (361)
T ss_dssp             GTC----CTTCCEEECCSSCCCCCCHHHHHHSCHHHHTTEECCSSCE
T ss_pred             HhcCcccCCcCCEEECCCCCCCccCHHHhhhccHhhcceEEecCCCc
Confidence            33   45677777777777777666 34556665  36677777643

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=99.68  E-value=3.6e-17  Score=140.32  Aligned_cols=165  Identities=20%  Similarity=0.235  Sum_probs=78.5

Q ss_pred             CcccEEEecCCCCCCCCCcCCcCceeEEeccCCcccccccCCCCCCChHhHHhhccccccccCCCCCCCCCCCCccEEEc
Q 037308           58 AEVKYFHWHGYPLKSLPSNLSAEKLVFLKVPYSDIEQLWNGEKHYSNLNQIINATCNKLIAKTPNPTLMPHLNKLVILNL  137 (321)
Q Consensus        58 ~~L~~l~l~~~~l~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~l~~L~~~l~l~~~~l~~~~~~~~~~~~l~~L~~L~l  137 (321)
                      .++..+++.++.+..++....+++|++|++++|.++.++ ++..+++|+. +++++|.++ .++   .+..+++|++|++
T Consensus        19 ~~l~~l~l~~~~i~~~~~~~~l~~L~~L~l~~n~i~~l~-~l~~l~~L~~-L~L~~N~i~-~~~---~l~~l~~L~~L~L   92 (263)
T 1xeu_A           19 ANAVKQNLGKQSVTDLVSQKELSGVQNFNGDNSNIQSLA-GMQFFTNLKE-LHLSHNQIS-DLS---PLKDLTKLEELSV   92 (263)
T ss_dssp             HHHHHHHHTCSCTTSEECHHHHTTCSEEECTTSCCCCCT-TGGGCTTCCE-EECCSSCCC-CCG---GGTTCSSCCEEEC
T ss_pred             HHHHHHHhcCCCcccccchhhcCcCcEEECcCCCcccch-HHhhCCCCCE-EECCCCccC-CCh---hhccCCCCCEEEC
Confidence            334444455555444442224555555555555555443 3444555555 555555554 333   1445555555555


Q ss_pred             cCCCCCcccCccccCcccCcEEecCCCCCccccccc-ccCCccEEEeccccccccChhhhccCCCCeEecccCccccccc
Q 037308          138 RGSKSLKSLPSGIFNLEFLTKLDLSGCSKLKRLLEI-SSGNINWLFLRETAIEELPSSIERLLRLGHLDLSDCKRLKSLP  216 (321)
Q Consensus       138 ~~n~~~~~~p~~l~~l~~L~~L~l~~~~~~~~~~~~-~~~~L~~L~l~~~~i~~l~~~~~~l~~L~~L~l~~n~~~~~~~  216 (321)
                      ++|.+ ..+|. +.. ++|+.|++++|...+ ++.. .+++|+.|++++|.+++++ .+..+++|++|++++|.+.+.  
T Consensus        93 ~~N~l-~~l~~-~~~-~~L~~L~L~~N~l~~-~~~l~~l~~L~~L~Ls~N~i~~~~-~l~~l~~L~~L~L~~N~i~~~--  165 (263)
T 1xeu_A           93 NRNRL-KNLNG-IPS-ACLSRLFLDNNELRD-TDSLIHLKNLEILSIRNNKLKSIV-MLGFLSKLEVLDLHGNEITNT--  165 (263)
T ss_dssp             CSSCC-SCCTT-CCC-SSCCEEECCSSCCSB-SGGGTTCTTCCEEECTTSCCCBCG-GGGGCTTCCEEECTTSCCCBC--
T ss_pred             CCCcc-CCcCc-ccc-CcccEEEccCCccCC-ChhhcCcccccEEECCCCcCCCCh-HHccCCCCCEEECCCCcCcch--
Confidence            55542 22333 222 555555555543222 2221 3445555555555555554 344555555555555554433  


Q ss_pred             ccccCCCCCCEEEecCCCC
Q 037308          217 SSLFKLKSLGVLNLGGCSN  235 (321)
Q Consensus       217 ~~~~~l~~L~~L~l~~~~~  235 (321)
                      ..+..+++|+.|++++|.+
T Consensus       166 ~~l~~l~~L~~L~l~~N~~  184 (263)
T 1xeu_A          166 GGLTRLKKVNWIDLTGQKC  184 (263)
T ss_dssp             TTSTTCCCCCEEEEEEEEE
T ss_pred             HHhccCCCCCEEeCCCCcc
Confidence            3344555555555555443

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=99.68  E-value=7.7e-18  Score=160.59  Aligned_cols=224  Identities=16%  Similarity=0.054  Sum_probs=142.8

Q ss_pred             CcccEEEecCCCCCCCCCcC-CcCceeEEeccCCccccc--ccCCCCCCChHhHHhhccccccc-cCCCCCCCCCCCCcc
Q 037308           58 AEVKYFHWHGYPLKSLPSNL-SAEKLVFLKVPYSDIEQL--WNGEKHYSNLNQIINATCNKLIA-KTPNPTLMPHLNKLV  133 (321)
Q Consensus        58 ~~L~~l~l~~~~l~~~~~~~-~l~~L~~L~l~~~~l~~~--~~~~~~l~~L~~~l~l~~~~l~~-~~~~~~~~~~l~~L~  133 (321)
                      ++|+.+++.++....++..+ .+++|++|++++|.++..  ...+..+++|+. ++++ +.+.. .++.  ....+++|+
T Consensus       270 ~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~Ls~~~l~~~~~~~~~~~~~~L~~-L~L~-~~~~~~~l~~--~~~~~~~L~  345 (592)
T 3ogk_B          270 RKLCRLGLSYMGPNEMPILFPFAAQIRKLDLLYALLETEDHCTLIQKCPNLEV-LETR-NVIGDRGLEV--LAQYCKQLK  345 (592)
T ss_dssp             TTCCEEEETTCCTTTGGGGGGGGGGCCEEEETTCCCCHHHHHHHHTTCTTCCE-EEEE-GGGHHHHHHH--HHHHCTTCC
T ss_pred             ccccccCccccchhHHHHHHhhcCCCcEEecCCCcCCHHHHHHHHHhCcCCCE-Eecc-CccCHHHHHH--HHHhCCCCC
Confidence            66666666665545555544 577888888888775432  122356677777 7776 33331 1221  234567788


Q ss_pred             EEEccC----------CCCCc-c-cCccccCcccCcEEecCCCCCccccccc---ccCCccEEEec----cccccccC--
Q 037308          134 ILNLRG----------SKSLK-S-LPSGIFNLEFLTKLDLSGCSKLKRLLEI---SSGNINWLFLR----ETAIEELP--  192 (321)
Q Consensus       134 ~L~l~~----------n~~~~-~-~p~~l~~l~~L~~L~l~~~~~~~~~~~~---~~~~L~~L~l~----~~~i~~l~--  192 (321)
                      +|++++          +...+ . ++.....+++|+.|+++.+......+..   .+++|+.|+++    .+.+++.|  
T Consensus       346 ~L~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~  425 (592)
T 3ogk_B          346 RLRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDREERITDLPLD  425 (592)
T ss_dssp             EEEEECCCCSSTTSSTTCCCCHHHHHHHHHHCTTCSEEEEEESCCCHHHHHHHHHHCCSCCEEEEEECSCCSCCSSCCCH
T ss_pred             EEEeecCccccccccccCccCHHHHHHHHhhCccCeEEEeecCCccHHHHHHHHhhCCCCcEEEEeecCCCccccCchHH
Confidence            888883          32222 1 2222345788888888554433222211   26788888885    56666543  


Q ss_pred             ----hhhhccCCCCeEecccCc--ccccccccc-cCCCCCCEEEecCCCCCC-ccccccCCCCCCcEEEcccCCCc--cc
Q 037308          193 ----SSIERLLRLGHLDLSDCK--RLKSLPSSL-FKLKSLGVLNLGGCSNLQ-RLPECLGQLSSPIILNLAKTNVE--RI  262 (321)
Q Consensus       193 ----~~~~~l~~L~~L~l~~n~--~~~~~~~~~-~~l~~L~~L~l~~~~~~~-~~~~~~~~~~~L~~L~l~~n~l~--~l  262 (321)
                          ..+..+++|++|+++.|.  +.+.....+ ..+++|+.|++++|.+.+ .++..+.++++|+.|++++|.++  .+
T Consensus       426 ~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~  505 (592)
T 3ogk_B          426 NGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCCFSERAI  505 (592)
T ss_dssp             HHHHHHHHHCTTCCEEEEECCGGGCCHHHHHHHHHSCTTCCEEEECSCCSSHHHHHHHHTCCTTCCEEEEESCCCBHHHH
T ss_pred             HHHHHHHHhCCCCCEEEEecCCCCccHHHHHHHHHhCccceEeeccCCCCCHHHHHHHHhcCcccCeeeccCCCCcHHHH
Confidence                235678889999987543  444333333 358889999999888765 34455678899999999999987  34


Q ss_pred             chhhhccCCcCEEeccCCCCcccc
Q 037308          263 PESIIQLFVLRYLLLSYSERIQSV  286 (321)
Q Consensus       263 ~~~l~~l~~L~~L~l~~n~~l~~~  286 (321)
                      +.....+++|++|++++|+ ++..
T Consensus       506 ~~~~~~l~~L~~L~ls~n~-it~~  528 (592)
T 3ogk_B          506 AAAVTKLPSLRYLWVQGYR-ASMT  528 (592)
T ss_dssp             HHHHHHCSSCCEEEEESCB-CCTT
T ss_pred             HHHHHhcCccCeeECcCCc-CCHH
Confidence            5556778999999999994 6554

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=99.68  E-value=5.9e-16  Score=129.10  Aligned_cols=146  Identities=21%  Similarity=0.197  Sum_probs=88.8

Q ss_pred             cEEEccCCCCCcccCccccCcccCcEEecCCCCCccccccc--ccCCccEEEecccccccc-ChhhhccCCCCeEecccC
Q 037308          133 VILNLRGSKSLKSLPSGIFNLEFLTKLDLSGCSKLKRLLEI--SSGNINWLFLRETAIEEL-PSSIERLLRLGHLDLSDC  209 (321)
Q Consensus       133 ~~L~l~~n~~~~~~p~~l~~l~~L~~L~l~~~~~~~~~~~~--~~~~L~~L~l~~~~i~~l-~~~~~~l~~L~~L~l~~n  209 (321)
                      +.++.+++. +..+|..+.  ++++.|++++|......+..  .+++|++|++++|.++.+ |..+..+++|++|++++|
T Consensus        14 ~~v~c~~~~-l~~iP~~l~--~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N   90 (220)
T 2v9t_B           14 NIVDCRGKG-LTEIPTNLP--ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGN   90 (220)
T ss_dssp             TEEECTTSC-CSSCCSSCC--TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSS
T ss_pred             CEEEcCCCC-cCcCCCccC--cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCC
Confidence            455666655 445554332  56667777665433222211  355666777777766665 345666667777777776


Q ss_pred             cccccccccccCCCCCCEEEecCCCCCCccccccCCCCCCcEEEcccCCCcccch-hhhccCCcCEEeccCCC
Q 037308          210 KRLKSLPSSLFKLKSLGVLNLGGCSNLQRLPECLGQLSSPIILNLAKTNVERIPE-SIIQLFVLRYLLLSYSE  281 (321)
Q Consensus       210 ~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~l~~-~l~~l~~L~~L~l~~n~  281 (321)
                      .+....+..+.++++|+.|++++|.+.+..+..+..+++|+.|++++|.++.++. .+..+++|++|++++|+
T Consensus        91 ~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~  163 (220)
T 2v9t_B           91 KITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNP  163 (220)
T ss_dssp             CCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSC
T ss_pred             cCCccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCC
Confidence            6655444455666677777777766666666666666777777777777665553 45666667777777664

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=99.67  E-value=5.3e-18  Score=161.74  Aligned_cols=268  Identities=15%  Similarity=0.010  Sum_probs=142.7

Q ss_pred             CCCCceEEEEeecCCCCccccceeccCCCCc-CcccEEEecCCCCCCCCCc-----C-CcCceeEEeccCCcccccccCC
Q 037308           27 KMPKLRFLKFYSSSFNGENKCKVSYLQDPRF-AEVKYFHWHGYPLKSLPSN-----L-SAEKLVFLKVPYSDIEQLWNGE   99 (321)
Q Consensus        27 ~l~~L~~L~l~~n~~~~~~~~~~~~~~~l~~-~~L~~l~l~~~~l~~~~~~-----~-~l~~L~~L~l~~~~l~~~~~~~   99 (321)
                      .+++|++|++++|.+++....+  ....... ++|+.|+++++.+..+...     + .+++|++|++++|.+..++..+
T Consensus       162 ~~~~L~~L~L~~~~~~~~~~~~--l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~l~~~~  239 (592)
T 3ogk_B          162 HCRKIKTLLMEESSFSEKDGKW--LHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILELVGFF  239 (592)
T ss_dssp             HCTTCSEEECTTCEEECCCSHH--HHHHHHHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBGGGGHHHH
T ss_pred             hCCCCCEEECccccccCcchhH--HHHHHhcCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCccHHHHHHHH
Confidence            5677777777776543332110  1111122 7788888877776533321     2 5788888888888777766666


Q ss_pred             CCCCChHhHHhhcccccc---ccCCCCCCCCCCCCccEEEccCCCCCcccCccccCcccCcEEecCCCCCccccc-c--c
Q 037308          100 KHYSNLNQIINATCNKLI---AKTPNPTLMPHLNKLVILNLRGSKSLKSLPSGIFNLEFLTKLDLSGCSKLKRLL-E--I  173 (321)
Q Consensus       100 ~~l~~L~~~l~l~~~~l~---~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~l~~l~~L~~L~l~~~~~~~~~~-~--~  173 (321)
                      ..+++|++ ++++.....   +....  .+..+++|+.|+++++. ...+|..+..+++|++|++++|....... .  .
T Consensus       240 ~~~~~L~~-L~l~~~~~~~~~~~~~~--~l~~~~~L~~L~l~~~~-~~~l~~~~~~~~~L~~L~Ls~~~l~~~~~~~~~~  315 (592)
T 3ogk_B          240 KAAANLEE-FCGGSLNEDIGMPEKYM--NLVFPRKLCRLGLSYMG-PNEMPILFPFAAQIRKLDLLYALLETEDHCTLIQ  315 (592)
T ss_dssp             HHCTTCCE-EEECBCCCCTTCTTSSS--CCCCCTTCCEEEETTCC-TTTGGGGGGGGGGCCEEEETTCCCCHHHHHHHHT
T ss_pred             hhhhHHHh-hcccccccccchHHHHH--HhhccccccccCccccc-hhHHHHHHhhcCCCcEEecCCCcCCHHHHHHHHH
Confidence            66667766 666432111   01111  34555666666666543 34455555556666666666655211111 0  1


Q ss_pred             cc------------------------CCccEEEec-----------cccccc--cChhhhccCCCCeEecccCccccccc
Q 037308          174 SS------------------------GNINWLFLR-----------ETAIEE--LPSSIERLLRLGHLDLSDCKRLKSLP  216 (321)
Q Consensus       174 ~~------------------------~~L~~L~l~-----------~~~i~~--l~~~~~~l~~L~~L~l~~n~~~~~~~  216 (321)
                      .+                        ++|++|+++           .+.++.  ++.....+++|++|+++.+.+.+..+
T Consensus       316 ~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~l~~~~~  395 (592)
T 3ogk_B          316 KCPNLEVLETRNVIGDRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYVSDITNESL  395 (592)
T ss_dssp             TCTTCCEEEEEGGGHHHHHHHHHHHCTTCCEEEEECCCCSSTTSSTTCCCCHHHHHHHHHHCTTCSEEEEEESCCCHHHH
T ss_pred             hCcCCCEEeccCccCHHHHHHHHHhCCCCCEEEeecCccccccccccCccCHHHHHHHHhhCccCeEEEeecCCccHHHH
Confidence            23                        445555555           233332  22223345566666665555544443


Q ss_pred             ccccC-CCCCCEEEecC---CCCCCc------cccccCCCCCCcEEEcccCC--Cc-ccchhh-hccCCcCEEeccCCCC
Q 037308          217 SSLFK-LKSLGVLNLGG---CSNLQR------LPECLGQLSSPIILNLAKTN--VE-RIPESI-IQLFVLRYLLLSYSER  282 (321)
Q Consensus       217 ~~~~~-l~~L~~L~l~~---~~~~~~------~~~~~~~~~~L~~L~l~~n~--l~-~l~~~l-~~l~~L~~L~l~~n~~  282 (321)
                      ..++. +++|+.|++++   |+..+.      ++..+.++++|+.|+++.|.  ++ ..+..+ ..+++|++|++++| .
T Consensus       396 ~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~~~~~~~~~L~~L~L~~n-~  474 (592)
T 3ogk_B          396 ESIGTYLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYV-G  474 (592)
T ss_dssp             HHHHHHCCSCCEEEEEECSCCSCCSSCCCHHHHHHHHHHCTTCCEEEEECCGGGCCHHHHHHHHHSCTTCCEEEECSC-C
T ss_pred             HHHHhhCCCCcEEEEeecCCCccccCchHHHHHHHHHHhCCCCCEEEEecCCCCccHHHHHHHHHhCccceEeeccCC-C
Confidence            33433 66677777652   222222      22234556777777776433  44 222333 34778888888887 4


Q ss_pred             cccc--c----CccccccccccccC
Q 037308          283 IQSV--S----LPLARGILEDTQRS  301 (321)
Q Consensus       283 l~~~--~----~~~~l~~l~~~~~~  301 (321)
                      +++.  +    ..++++.|++.+|.
T Consensus       475 l~~~~~~~~~~~~~~L~~L~l~~n~  499 (592)
T 3ogk_B          475 ESDEGLMEFSRGCPNLQKLEMRGCC  499 (592)
T ss_dssp             SSHHHHHHHHTCCTTCCEEEEESCC
T ss_pred             CCHHHHHHHHhcCcccCeeeccCCC
Confidence            5432  2    23578888888876

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=99.67  E-value=4.4e-16  Score=129.88  Aligned_cols=153  Identities=16%  Similarity=0.129  Sum_probs=99.3

Q ss_pred             cEEEecCCCCCCCCCcCCcCceeEEeccCCcccccccCCCCCCChHhHHhhccccccccCCCCCCCCCCCCccEEEccCC
Q 037308           61 KYFHWHGYPLKSLPSNLSAEKLVFLKVPYSDIEQLWNGEKHYSNLNQIINATCNKLIAKTPNPTLMPHLNKLVILNLRGS  140 (321)
Q Consensus        61 ~~l~l~~~~l~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~l~~L~~~l~l~~~~l~~~~~~~~~~~~l~~L~~L~l~~n  140 (321)
                      +.++++++.++.+|..+ .+.+++|++++|.++.+...                         ..+..+++|++|++++|
T Consensus        14 ~~l~~s~n~l~~iP~~~-~~~~~~L~L~~N~l~~~~~~-------------------------~~~~~l~~L~~L~L~~N   67 (220)
T 2v70_A           14 TTVDCSNQKLNKIPEHI-PQYTAELRLNNNEFTVLEAT-------------------------GIFKKLPQLRKINFSNN   67 (220)
T ss_dssp             TEEECCSSCCSSCCSCC-CTTCSEEECCSSCCCEECCC-------------------------CCGGGCTTCCEEECCSS
T ss_pred             CEeEeCCCCcccCccCC-CCCCCEEEcCCCcCCccCch-------------------------hhhccCCCCCEEECCCC
Confidence            47788888887777654 34567777777777665221                         12344445555555555


Q ss_pred             CCCcccCccccCcccCcEEecCCCCCccccccc--ccCCccEEEecccccccc-ChhhhccCCCCeEecccCcccccccc
Q 037308          141 KSLKSLPSGIFNLEFLTKLDLSGCSKLKRLLEI--SSGNINWLFLRETAIEEL-PSSIERLLRLGHLDLSDCKRLKSLPS  217 (321)
Q Consensus       141 ~~~~~~p~~l~~l~~L~~L~l~~~~~~~~~~~~--~~~~L~~L~l~~~~i~~l-~~~~~~l~~L~~L~l~~n~~~~~~~~  217 (321)
                      .+.+..+..|..+++|+.|++++|...+..+..  .+++|++|++++|.++.+ |..+..+++|++|++++|.+.+..|.
T Consensus        68 ~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~  147 (220)
T 2v70_A           68 KITDIEEGAFEGASGVNEILLTSNRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPG  147 (220)
T ss_dssp             CCCEECTTTTTTCTTCCEEECCSSCCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTT
T ss_pred             cCCEECHHHhCCCCCCCEEECCCCccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHH
Confidence            433333334445555555555554332222211  245566666666777776 45688899999999999999888888


Q ss_pred             cccCCCCCCEEEecCCCCCCcc
Q 037308          218 SLFKLKSLGVLNLGGCSNLQRL  239 (321)
Q Consensus       218 ~~~~l~~L~~L~l~~~~~~~~~  239 (321)
                      .+..+++|+.|++++|++.+..
T Consensus       148 ~~~~l~~L~~L~L~~N~l~c~c  169 (220)
T 2v70_A          148 AFDTLHSLSTLNLLANPFNCNC  169 (220)
T ss_dssp             TTTTCTTCCEEECCSCCEECSG
T ss_pred             HhcCCCCCCEEEecCcCCcCCC
Confidence            9999999999999999877654

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=99.65  E-value=1.5e-15  Score=127.46  Aligned_cols=84  Identities=24%  Similarity=0.205  Sum_probs=50.3

Q ss_pred             CCccEEEeccccccccChh-hhccCCCCeEecccCcccccccccccCCCCCCEEEecCCCCCCccccccCCCCCCcEEEc
Q 037308          176 GNINWLFLRETAIEELPSS-IERLLRLGHLDLSDCKRLKSLPSSLFKLKSLGVLNLGGCSNLQRLPECLGQLSSPIILNL  254 (321)
Q Consensus       176 ~~L~~L~l~~~~i~~l~~~-~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l  254 (321)
                      ++|++|++++|.++.++.. +..+++|++|++++|.+. .+|..+..+++|+.|++++|.+.+..+..+..+++|+.|++
T Consensus        88 ~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l  166 (229)
T 3e6j_A           88 TQLTVLDLGTNQLTVLPSAVFDRLVHLKELFMCCNKLT-ELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYL  166 (229)
T ss_dssp             TTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-SCCTTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred             CCcCEEECCCCcCCccChhHhCcchhhCeEeccCCccc-ccCcccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEe
Confidence            3444444444445554432 455666666666666644 45555666667777777766665544455666777777777


Q ss_pred             ccCCCc
Q 037308          255 AKTNVE  260 (321)
Q Consensus       255 ~~n~l~  260 (321)
                      ++|.++
T Consensus       167 ~~N~~~  172 (229)
T 3e6j_A          167 FGNPWD  172 (229)
T ss_dssp             TTSCBC
T ss_pred             eCCCcc
Confidence            777766

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=99.65  E-value=1.9e-15  Score=126.78  Aligned_cols=110  Identities=21%  Similarity=0.182  Sum_probs=91.0

Q ss_pred             cCCccEEEeccccccccCh-hhhccCCCCeEecccCcccccccccccCCCCCCEEEecCCCCCCccccccCCCCCCcEEE
Q 037308          175 SGNINWLFLRETAIEELPS-SIERLLRLGHLDLSDCKRLKSLPSSLFKLKSLGVLNLGGCSNLQRLPECLGQLSSPIILN  253 (321)
Q Consensus       175 ~~~L~~L~l~~~~i~~l~~-~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~  253 (321)
                      +++|++|++++|.++.++. .+..+++|++|++++|.+.+..+..+..+++|+.|++++|.+. .+|..+..+++|+.|+
T Consensus        63 l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~  141 (229)
T 3e6j_A           63 LINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQLTVLPSAVFDRLVHLKELFMCCNKLT-ELPRGIERLTHLTHLA  141 (229)
T ss_dssp             CTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-SCCTTGGGCTTCSEEE
T ss_pred             ccCCcEEECCCCCCCCcChhhcccCCCcCEEECCCCcCCccChhHhCcchhhCeEeccCCccc-ccCcccccCCCCCEEE
Confidence            4455555555566667664 3688999999999999988777777899999999999998776 7788899999999999


Q ss_pred             cccCCCcccch-hhhccCCcCEEeccCCCCccc
Q 037308          254 LAKTNVERIPE-SIIQLFVLRYLLLSYSERIQS  285 (321)
Q Consensus       254 l~~n~l~~l~~-~l~~l~~L~~L~l~~n~~l~~  285 (321)
                      +++|+++.++. .+..+++|++|++.+|+.-..
T Consensus       142 L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~  174 (229)
T 3e6j_A          142 LDQNQLKSIPHGAFDRLSSLTHAYLFGNPWDCE  174 (229)
T ss_dssp             CCSSCCCCCCTTTTTTCTTCCEEECTTSCBCTT
T ss_pred             CCCCcCCccCHHHHhCCCCCCEEEeeCCCccCC
Confidence            99999998884 578899999999999964433

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=99.65  E-value=2e-18  Score=163.47  Aligned_cols=190  Identities=18%  Similarity=0.188  Sum_probs=131.0

Q ss_pred             CcCceeEEeccCCcccccccCCCCCCChHhHHhhccccccccCCCCCCCCCCCCccEEEccCCCCCcccCccccCcccCc
Q 037308           78 SAEKLVFLKVPYSDIEQLWNGEKHYSNLNQIINATCNKLIAKTPNPTLMPHLNKLVILNLRGSKSLKSLPSGIFNLEFLT  157 (321)
Q Consensus        78 ~l~~L~~L~l~~~~l~~~~~~~~~l~~L~~~l~l~~~~l~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~l~~l~~L~  157 (321)
                      ..++|+.|++++|+++.+|..++.+++|+. ++++++......+.        .+.     .+...+..|..++.+++|+
T Consensus       347 ~~~~L~~L~Ls~n~L~~Lp~~i~~l~~L~~-L~l~~n~~l~~l~~--------ll~-----~~~~~~~~~~~l~~l~~L~  412 (567)
T 1dce_A          347 TDEQLFRCELSVEKSTVLQSELESCKELQE-LEPENKWCLLTIIL--------LMR-----ALDPLLYEKETLQYFSTLK  412 (567)
T ss_dssp             TTTTSSSCCCCHHHHHHHHHHHHHHHHHHH-HCTTCHHHHHHHHH--------HHH-----HHCTGGGHHHHHHHHHHHH
T ss_pred             cCccceeccCChhhHHhhHHHHHHHHHHHH-hccccchhhhhHHH--------HHH-----hcccccCCHHHHHHHHhcc
Confidence            456666777777777666666666666666 66644431101110        000     0012334455566667777


Q ss_pred             EEe-cCCCCCcccc----------cccccCCccEEEeccccccccChhhhccCCCCeEecccCcccccccccccCCCCCC
Q 037308          158 KLD-LSGCSKLKRL----------LEISSGNINWLFLRETAIEELPSSIERLLRLGHLDLSDCKRLKSLPSSLFKLKSLG  226 (321)
Q Consensus       158 ~L~-l~~~~~~~~~----------~~~~~~~L~~L~l~~~~i~~l~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~  226 (321)
                      .|+ ++.+ ....+          .......|+.|++++|.++++|. +..+++|+.|++++|.+. .+|..++.+++|+
T Consensus       413 ~L~~l~~n-~~~~L~~l~l~~n~i~~l~~~~L~~L~Ls~n~l~~lp~-~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~  489 (567)
T 1dce_A          413 AVDPMRAA-YLDDLRSKFLLENSVLKMEYADVRVLHLAHKDLTVLCH-LEQLLLVTHLDLSHNRLR-ALPPALAALRCLE  489 (567)
T ss_dssp             HHCGGGHH-HHHHHHHHHHHHHHHHHHHHTTCSEEECTTSCCSSCCC-GGGGTTCCEEECCSSCCC-CCCGGGGGCTTCC
T ss_pred             cCcchhhc-ccchhhhhhhhcccccccCccCceEEEecCCCCCCCcC-ccccccCcEeecCccccc-ccchhhhcCCCCC
Confidence            666 3332 11111          11123468899999999999886 888999999999998876 6788889999999


Q ss_pred             EEEecCCCCCCccccccCCCCCCcEEEcccCCCccc--chhhhccCCcCEEeccCCCCccccc
Q 037308          227 VLNLGGCSNLQRLPECLGQLSSPIILNLAKTNVERI--PESIIQLFVLRYLLLSYSERIQSVS  287 (321)
Q Consensus       227 ~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~l--~~~l~~l~~L~~L~l~~n~~l~~~~  287 (321)
                      .|++++|.+.+ +| .++.+++|+.|++++|.++.+  |..+..+++|+.|++++| .++.+|
T Consensus       490 ~L~Ls~N~l~~-lp-~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N-~l~~~~  549 (567)
T 1dce_A          490 VLQASDNALEN-VD-GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGN-SLCQEE  549 (567)
T ss_dssp             EEECCSSCCCC-CG-GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTS-GGGGSS
T ss_pred             EEECCCCCCCC-Cc-ccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCC-cCCCCc
Confidence            99999987766 66 788999999999999999977  788889999999999999 666654

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=99.65  E-value=6.3e-16  Score=138.64  Aligned_cols=173  Identities=19%  Similarity=0.153  Sum_probs=110.9

Q ss_pred             cEEEecCCCCCCCCCcCCcCceeEEeccCCcccccccCCC--CCCChHhHHhhccccccccCCCCCCCCCCCCccEEEcc
Q 037308           61 KYFHWHGYPLKSLPSNLSAEKLVFLKVPYSDIEQLWNGEK--HYSNLNQIINATCNKLIAKTPNPTLMPHLNKLVILNLR  138 (321)
Q Consensus        61 ~~l~l~~~~l~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~--~l~~L~~~l~l~~~~l~~~~~~~~~~~~l~~L~~L~l~  138 (321)
                      +.++++++.+..+|..+ .+.++.|++++|+++.++....  .+++|+. |+++.|.++ .++. ..|..+++|++|+++
T Consensus        21 ~~l~c~~~~l~~iP~~~-~~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~-L~L~~N~i~-~i~~-~~~~~l~~L~~L~Ls   96 (361)
T 2xot_A           21 NILSCSKQQLPNVPQSL-PSYTALLDLSHNNLSRLRAEWTPTRLTNLHS-LLLSHNHLN-FISS-EAFVPVPNLRYLDLS   96 (361)
T ss_dssp             TEEECCSSCCSSCCSSC-CTTCSEEECCSSCCCEECTTSSSSCCTTCCE-EECCSSCCC-EECT-TTTTTCTTCCEEECC
T ss_pred             CEEEeCCCCcCccCccC-CCCCCEEECCCCCCCccChhhhhhcccccCE-EECCCCcCC-ccCh-hhccCCCCCCEEECC
Confidence            56777777777777653 3457778888888877765433  6777777 888888877 4441 157778888888888


Q ss_pred             CCCCCcccCccccCcccCcEEecCCCCCccccccc--ccCCccEEEeccccccccChhh----hccCCCCeEecccCccc
Q 037308          139 GSKSLKSLPSGIFNLEFLTKLDLSGCSKLKRLLEI--SSGNINWLFLRETAIEELPSSI----ERLLRLGHLDLSDCKRL  212 (321)
Q Consensus       139 ~n~~~~~~p~~l~~l~~L~~L~l~~~~~~~~~~~~--~~~~L~~L~l~~~~i~~l~~~~----~~l~~L~~L~l~~n~~~  212 (321)
                      +|.+....+..|..+++|+.|++++|......+..  .+++|+.|++++|.++.+|..+    ..+++|+.|++++|.+.
T Consensus        97 ~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~l~  176 (361)
T 2xot_A           97 SNHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLK  176 (361)
T ss_dssp             SSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCSSCCC
T ss_pred             CCcCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCCCCC
Confidence            88755444455777778888888776543322221  3566667777777777666543    45666777777776655


Q ss_pred             ccccccccCCCC--CCEEEecCCCCCC
Q 037308          213 KSLPSSLFKLKS--LGVLNLGGCSNLQ  237 (321)
Q Consensus       213 ~~~~~~~~~l~~--L~~L~l~~~~~~~  237 (321)
                      ...+..+..++.  ++.|++.+|++..
T Consensus       177 ~l~~~~~~~l~~~~l~~l~l~~N~~~C  203 (361)
T 2xot_A          177 KLPLTDLQKLPAWVKNGLYLHNNPLEC  203 (361)
T ss_dssp             CCCHHHHHHSCHHHHTTEECCSSCEEC
T ss_pred             ccCHHHhhhccHhhcceEEecCCCccC
Confidence            544445555554  3666666665543

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=99.64  E-value=3.1e-18  Score=162.13  Aligned_cols=197  Identities=17%  Similarity=0.051  Sum_probs=133.1

Q ss_pred             CcccEEEecCCCCCCCCCcC-CcCceeEEeccCCcc--------------cccccCCCCCCChHhHHh-hccccccccCC
Q 037308           58 AEVKYFHWHGYPLKSLPSNL-SAEKLVFLKVPYSDI--------------EQLWNGEKHYSNLNQIIN-ATCNKLIAKTP  121 (321)
Q Consensus        58 ~~L~~l~l~~~~l~~~~~~~-~l~~L~~L~l~~~~l--------------~~~~~~~~~l~~L~~~l~-l~~~~l~~~~~  121 (321)
                      ++|+.|++++|.++.+|..+ .+++|+.|++++|..              ...+..+..+++|+. ++ ++.|.+.    
T Consensus       349 ~~L~~L~Ls~n~L~~Lp~~i~~l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~l~~l~~L~~-L~~l~~n~~~----  423 (567)
T 1dce_A          349 EQLFRCELSVEKSTVLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKA-VDPMRAAYLD----  423 (567)
T ss_dssp             TTSSSCCCCHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHH-HCGGGHHHHH----
T ss_pred             ccceeccCChhhHHhhHHHHHHHHHHHHhccccchhhhhHHHHHHhcccccCCHHHHHHHHhccc-Ccchhhcccc----
Confidence            88999999999998898877 799999999977641              111122233344444 43 2333221    


Q ss_pred             CCCCCCCCCCccEEEccCCCCCcccCccccCcccCcEEecCCCCCccccccc-ccCCccEEEeccccccccChhhhccCC
Q 037308          122 NPTLMPHLNKLVILNLRGSKSLKSLPSGIFNLEFLTKLDLSGCSKLKRLLEI-SSGNINWLFLRETAIEELPSSIERLLR  200 (321)
Q Consensus       122 ~~~~~~~l~~L~~L~l~~n~~~~~~p~~l~~l~~L~~L~l~~~~~~~~~~~~-~~~~L~~L~l~~~~i~~l~~~~~~l~~  200 (321)
                               .|+.+.+++|. +..+|.     ..|+.|++++|.. +.+|.. .+++|+.|++++|.++.+|..++.+++
T Consensus       424 ---------~L~~l~l~~n~-i~~l~~-----~~L~~L~Ls~n~l-~~lp~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~  487 (567)
T 1dce_A          424 ---------DLRSKFLLENS-VLKMEY-----ADVRVLHLAHKDL-TVLCHLEQLLLVTHLDLSHNRLRALPPALAALRC  487 (567)
T ss_dssp             ---------HHHHHHHHHHH-HHHHHH-----TTCSEEECTTSCC-SSCCCGGGGTTCCEEECCSSCCCCCCGGGGGCTT
T ss_pred             ---------hhhhhhhhccc-ccccCc-----cCceEEEecCCCC-CCCcCccccccCcEeecCcccccccchhhhcCCC
Confidence                     11111122221 111111     1355555555432 223322 355666677777778888888999999


Q ss_pred             CCeEecccCcccccccccccCCCCCCEEEecCCCCCCcc-ccccCCCCCCcEEEcccCCCcccchh----hhccCCcCEE
Q 037308          201 LGHLDLSDCKRLKSLPSSLFKLKSLGVLNLGGCSNLQRL-PECLGQLSSPIILNLAKTNVERIPES----IIQLFVLRYL  275 (321)
Q Consensus       201 L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~-~~~~~~~~~L~~L~l~~n~l~~l~~~----l~~l~~L~~L  275 (321)
                      |++|++++|.+.+ +| .++.+++|+.|++++|.+.+.. |..++.+++|+.|++++|.++.+|+.    +..+++|+.|
T Consensus       488 L~~L~Ls~N~l~~-lp-~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~l~~~lp~L~~L  565 (567)
T 1dce_A          488 LEVLQASDNALEN-VD-GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSI  565 (567)
T ss_dssp             CCEEECCSSCCCC-CG-GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSSCTTHHHHHCTTCSEE
T ss_pred             CCEEECCCCCCCC-Cc-ccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCCcCCCCccHHHHHHHHCcccCcc
Confidence            9999999999776 56 7899999999999999888776 89999999999999999999976643    3458899888


Q ss_pred             ec
Q 037308          276 LL  277 (321)
Q Consensus       276 ~l  277 (321)
                      ++
T Consensus       566 ~l  567 (567)
T 1dce_A          566 LT  567 (567)
T ss_dssp             EC
T ss_pred             CC
Confidence            64

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=99.61  E-value=4.7e-15  Score=118.17  Aligned_cols=133  Identities=24%  Similarity=0.149  Sum_probs=78.4

Q ss_pred             CCCccEEEccCCCCC-cccCccccCcccCcEEecCCCCCcccccccccCCccEEEeccccccccChhhhccCCCCeEecc
Q 037308          129 LNKLVILNLRGSKSL-KSLPSGIFNLEFLTKLDLSGCSKLKRLLEISSGNINWLFLRETAIEELPSSIERLLRLGHLDLS  207 (321)
Q Consensus       129 l~~L~~L~l~~n~~~-~~~p~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~i~~l~~~~~~l~~L~~L~l~  207 (321)
                      .++|++|++++|.+. +.+|..+..+++|+.|++++|..                      +++ ..+..+++|++|+++
T Consensus        23 ~~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l----------------------~~~-~~~~~l~~L~~L~Ls   79 (168)
T 2ell_A           23 PAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGL----------------------ISV-SNLPKLPKLKKLELS   79 (168)
T ss_dssp             TTSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCC----------------------CCC-SSCCCCSSCCEEEEE
T ss_pred             cccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCC----------------------CCh-hhhccCCCCCEEECc
Confidence            467888888888754 46777667777777777777542                      222 224444555555555


Q ss_pred             cCcccccccccccCCCCCCEEEecCCCCCCc-cccccCCCCCCcEEEcccCCCcccch----hhhccCCcCEEeccCCCC
Q 037308          208 DCKRLKSLPSSLFKLKSLGVLNLGGCSNLQR-LPECLGQLSSPIILNLAKTNVERIPE----SIIQLFVLRYLLLSYSER  282 (321)
Q Consensus       208 ~n~~~~~~~~~~~~l~~L~~L~l~~~~~~~~-~~~~~~~~~~L~~L~l~~n~l~~l~~----~l~~l~~L~~L~l~~n~~  282 (321)
                      +|.+.+.+|..+..+++|+.|++++|.+.+. .+..+..+++|+.|++++|.++.+|.    .+..+++|++|++++| .
T Consensus        80 ~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n-~  158 (168)
T 2ell_A           80 ENRIFGGLDMLAEKLPNLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDR-E  158 (168)
T ss_dssp             SCCCCSCCCHHHHHCTTCCEEECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEET-T
T ss_pred             CCcCchHHHHHHhhCCCCCEEeccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCC-C
Confidence            5555544444444555555555555544332 11455566666666666666665554    4556666666666666 4


Q ss_pred             ccc
Q 037308          283 IQS  285 (321)
Q Consensus       283 l~~  285 (321)
                      +.+
T Consensus       159 ~~~  161 (168)
T 2ell_A          159 DQE  161 (168)
T ss_dssp             SCB
T ss_pred             hhh
Confidence            444

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=99.60  E-value=4.8e-15  Score=118.09  Aligned_cols=127  Identities=20%  Similarity=0.200  Sum_probs=107.9

Q ss_pred             ccCCccEEEecccccc--ccChhhhccCCCCeEecccCcccccccccccCCCCCCEEEecCCCCCCccccccCCCCCCcE
Q 037308          174 SSGNINWLFLRETAIE--ELPSSIERLLRLGHLDLSDCKRLKSLPSSLFKLKSLGVLNLGGCSNLQRLPECLGQLSSPII  251 (321)
Q Consensus       174 ~~~~L~~L~l~~~~i~--~l~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~  251 (321)
                      .+++|+.|++++|.++  .+|..+..+++|++|++++|.+.+.  ..++.+++|+.|++++|.+.+.+|..+..+++|+.
T Consensus        22 ~~~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~   99 (168)
T 2ell_A           22 TPAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTH   99 (168)
T ss_dssp             CTTSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCE
T ss_pred             CcccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCE
Confidence            3567888888888888  7887788999999999999997765  67889999999999999988878888888999999


Q ss_pred             EEcccCCCcccc--hhhhccCCcCEEeccCCCCcccccC--------ccccccccccccCcc
Q 037308          252 LNLAKTNVERIP--ESIIQLFVLRYLLLSYSERIQSVSL--------PLARGILEDTQRSPH  303 (321)
Q Consensus       252 L~l~~n~l~~l~--~~l~~l~~L~~L~l~~n~~l~~~~~--------~~~l~~l~~~~~~~~  303 (321)
                      |++++|.++.++  ..+..+++|++|++++| .+..++.        .++++.|++..+...
T Consensus       100 L~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N-~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~  160 (168)
T 2ell_A          100 LNLSGNKLKDISTLEPLKKLECLKSLDLFNC-EVTNLNDYRESVFKLLPQLTYLDGYDREDQ  160 (168)
T ss_dssp             EECBSSSCCSSGGGGGGSSCSCCCEEECCSS-GGGTSTTHHHHHHTTCSSCCEETTEETTSC
T ss_pred             EeccCCccCcchhHHHHhcCCCCCEEEeeCC-cCcchHHHHHHHHHhCccCcEecCCCCChh
Confidence            999999999876  67889999999999999 7766652        357777777776543

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=99.60  E-value=1.3e-14  Score=118.32  Aligned_cols=126  Identities=21%  Similarity=0.184  Sum_probs=92.9

Q ss_pred             cEEecCCCCCcccccccccCCccEEEeccccccccChhhhccCCCCeEecccCcccccccccccCCCCCCEEEecCCCCC
Q 037308          157 TKLDLSGCSKLKRLLEISSGNINWLFLRETAIEELPSSIERLLRLGHLDLSDCKRLKSLPSSLFKLKSLGVLNLGGCSNL  236 (321)
Q Consensus       157 ~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~i~~l~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~~~~~  236 (321)
                      +.++++++. ++.+|...+++|++|++++|.++.+|..+..+++|++|++++|.+.+..+..+.++++|+.|++++|.+.
T Consensus        13 ~~l~~~~~~-l~~ip~~~~~~l~~L~L~~n~i~~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~l~   91 (193)
T 2wfh_A           13 TVVRCSNKG-LKVLPKGIPRDVTELYLDGNQFTLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLR   91 (193)
T ss_dssp             TEEECTTSC-CSSCCSCCCTTCCEEECCSSCCCSCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC
T ss_pred             CEEEcCCCC-CCcCCCCCCCCCCEEECCCCcCchhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCccC
Confidence            345555532 4444444456777777777777777777778888888888888877766677788888888888888777


Q ss_pred             CccccccCCCCCCcEEEcccCCCcccch-hhhccCCcCEEeccCCCCc
Q 037308          237 QRLPECLGQLSSPIILNLAKTNVERIPE-SIIQLFVLRYLLLSYSERI  283 (321)
Q Consensus       237 ~~~~~~~~~~~~L~~L~l~~n~l~~l~~-~l~~l~~L~~L~l~~n~~l  283 (321)
                      +..+..|..+++|+.|++++|.++.+|. .+..+++|++|++++|+.-
T Consensus        92 ~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~  139 (193)
T 2wfh_A           92 CIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPLY  139 (193)
T ss_dssp             BCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCEE
T ss_pred             EeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCCCee
Confidence            7776778888888888888888887775 4677888888888888443

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=99.58  E-value=5.1e-15  Score=115.49  Aligned_cols=127  Identities=24%  Similarity=0.174  Sum_probs=88.0

Q ss_pred             CCCccEEEccCCCCC-cccCccccCcccCcEEecCCCCCcccccccccCCccEEEeccccccccChhhhccCCCCeEecc
Q 037308          129 LNKLVILNLRGSKSL-KSLPSGIFNLEFLTKLDLSGCSKLKRLLEISSGNINWLFLRETAIEELPSSIERLLRLGHLDLS  207 (321)
Q Consensus       129 l~~L~~L~l~~n~~~-~~~p~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~i~~l~~~~~~l~~L~~L~l~  207 (321)
                      .++|+.|++++|.+. +.+|..+..+++|+.|++++|.                      ++++ ..+..+++|++|+++
T Consensus        16 ~~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~----------------------l~~~-~~~~~l~~L~~L~Ls   72 (149)
T 2je0_A           16 PSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVG----------------------LTSI-ANLPKLNKLKKLELS   72 (149)
T ss_dssp             GGGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSC----------------------CCCC-TTCCCCTTCCEEECC
T ss_pred             CccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCC----------------------CCCc-hhhhcCCCCCEEECC
Confidence            467888888888755 4667666667777777776653                      3333 335566677777777


Q ss_pred             cCcccccccccccCCCCCCEEEecCCCCCCc-cccccCCCCCCcEEEcccCCCcccch----hhhccCCcCEEecc
Q 037308          208 DCKRLKSLPSSLFKLKSLGVLNLGGCSNLQR-LPECLGQLSSPIILNLAKTNVERIPE----SIIQLFVLRYLLLS  278 (321)
Q Consensus       208 ~n~~~~~~~~~~~~l~~L~~L~l~~~~~~~~-~~~~~~~~~~L~~L~l~~n~l~~l~~----~l~~l~~L~~L~l~  278 (321)
                      +|.+.+.+|..++.+++|+.|++++|.+.+. .+..+..+++|+.|++++|.++.++.    .+..+++|++|+++
T Consensus        73 ~n~i~~~~~~~~~~l~~L~~L~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~  148 (149)
T 2je0_A           73 DNRVSGGLEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGY  148 (149)
T ss_dssp             SSCCCSCTHHHHHHCTTCCEEECTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTB
T ss_pred             CCcccchHHHHhhhCCCCCEEECCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCC
Confidence            7776665666666677777777777766552 33667778888888888888876664    56778888888775

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=99.58  E-value=9.2e-17  Score=153.15  Aligned_cols=82  Identities=17%  Similarity=0.005  Sum_probs=53.5

Q ss_pred             ccCCCCCCEEEecCCCCCCccccccCC-CCCCcEEEcccCCCcc-cchhh-hccCCcCEEeccCCCCccccc------Cc
Q 037308          219 LFKLKSLGVLNLGGCSNLQRLPECLGQ-LSSPIILNLAKTNVER-IPESI-IQLFVLRYLLLSYSERIQSVS------LP  289 (321)
Q Consensus       219 ~~~l~~L~~L~l~~~~~~~~~~~~~~~-~~~L~~L~l~~n~l~~-l~~~l-~~l~~L~~L~l~~n~~l~~~~------~~  289 (321)
                      +..+++|+.|++++ .+.......+.. +++|+.|++++|.++. ....+ ..+++|++|++++|+. ++..      -.
T Consensus       428 ~~~~~~L~~L~L~~-~l~~~~~~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~~-~~~~~~~~~~~l  505 (594)
T 2p1m_B          428 VEHCKDLRRLSLSG-LLTDKVFEYIGTYAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPF-GDKALLANASKL  505 (594)
T ss_dssp             HHHCTTCCEEECCS-SCCHHHHHHHHHHCTTCCEEEEESCCSSHHHHHHHHHHCTTCCEEEEESCSC-CHHHHHHTGGGG
T ss_pred             HhhCCCccEEeecC-cccHHHHHHHHHhchhccEeeccCCCCcHHHHHHHHhcCCCcCEEECcCCCC-cHHHHHHHHHhC
Confidence            34556666666654 333333333333 7788899998888872 22333 6789999999999954 4332      23


Q ss_pred             cccccccccccCc
Q 037308          290 LARGILEDTQRSP  302 (321)
Q Consensus       290 ~~l~~l~~~~~~~  302 (321)
                      ++++.|++.+|..
T Consensus       506 ~~L~~L~l~~~~~  518 (594)
T 2p1m_B          506 ETMRSLWMSSCSV  518 (594)
T ss_dssp             GGSSEEEEESSCC
T ss_pred             CCCCEEeeeCCCC
Confidence            6889999988866

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=99.58  E-value=1.9e-14  Score=117.35  Aligned_cols=125  Identities=22%  Similarity=0.204  Sum_probs=92.4

Q ss_pred             cEEEccCCCCCcccCccccCcccCcEEecCCCCCcccccc---cccCCccEEEecccccccc-ChhhhccCCCCeEeccc
Q 037308          133 VILNLRGSKSLKSLPSGIFNLEFLTKLDLSGCSKLKRLLE---ISSGNINWLFLRETAIEEL-PSSIERLLRLGHLDLSD  208 (321)
Q Consensus       133 ~~L~l~~n~~~~~~p~~l~~l~~L~~L~l~~~~~~~~~~~---~~~~~L~~L~l~~~~i~~l-~~~~~~l~~L~~L~l~~  208 (321)
                      +.++++++. ++.+|..+.  .+++.|++++|...+..+.   ..+++|++|++++|.++++ |..+..+++|++|++++
T Consensus        11 ~~l~~s~~~-l~~ip~~~~--~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~   87 (192)
T 1w8a_A           11 TTVDCTGRG-LKEIPRDIP--LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGE   87 (192)
T ss_dssp             TEEECTTSC-CSSCCSCCC--TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCS
T ss_pred             CEEEcCCCC-cCcCccCCC--CCCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCC
Confidence            678888877 466776443  3788888888654333322   1467788888888888876 45677788888888888


Q ss_pred             CcccccccccccCCCCCCEEEecCCCCCCccccccCCCCCCcEEEcccCCCc
Q 037308          209 CKRLKSLPSSLFKLKSLGVLNLGGCSNLQRLPECLGQLSSPIILNLAKTNVE  260 (321)
Q Consensus       209 n~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~  260 (321)
                      |.+.+..+..+.++++|+.|++++|.+.+..|..+..+++|+.|++++|.++
T Consensus        88 N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~  139 (192)
T 1w8a_A           88 NKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFN  139 (192)
T ss_dssp             CCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBC
T ss_pred             CcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCcc
Confidence            8877777777778888888888888777777777778888888888888877

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=99.56  E-value=3.6e-16  Score=152.32  Aligned_cols=117  Identities=16%  Similarity=0.135  Sum_probs=70.0

Q ss_pred             CCCCCCCCcC-CcCceeEEeccCCcccccccCCCCCCChHhHHhhccccccccCCCCCCCCCCCCccEEEccCCCCCccc
Q 037308           68 YPLKSLPSNL-SAEKLVFLKVPYSDIEQLWNGEKHYSNLNQIINATCNKLIAKTPNPTLMPHLNKLVILNLRGSKSLKSL  146 (321)
Q Consensus        68 ~~l~~~~~~~-~l~~L~~L~l~~~~l~~~~~~~~~l~~L~~~l~l~~~~l~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~  146 (321)
                      +.+...+..+ .++.|+.|+|++|.+..++..++.+++|+. |+++.|.++ .+|.  .+..+++|++|+|++|.+. .+
T Consensus       211 n~~~~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~~l~~L~~-L~Ls~N~l~-~lp~--~~~~l~~L~~L~Ls~N~l~-~l  285 (727)
T 4b8c_D          211 NRMVMPKDSKYDDQLWHALDLSNLQIFNISANIFKYDFLTR-LYLNGNSLT-ELPA--EIKNLSNLRVLDLSHNRLT-SL  285 (727)
T ss_dssp             -----------CCCCCCEEECTTSCCSCCCGGGGGCCSCSC-CBCTTSCCS-CCCG--GGGGGTTCCEEECTTSCCS-SC
T ss_pred             cceecChhhhccCCCCcEEECCCCCCCCCChhhcCCCCCCE-EEeeCCcCc-ccCh--hhhCCCCCCEEeCcCCcCC-cc
Confidence            3333333333 677788888888887777766677777777 777777777 6665  6777777777777777744 66


Q ss_pred             CccccCcccCcEEecCCCCCccccccc--ccCCccEEEeccccccc
Q 037308          147 PSGIFNLEFLTKLDLSGCSKLKRLLEI--SSGNINWLFLRETAIEE  190 (321)
Q Consensus       147 p~~l~~l~~L~~L~l~~~~~~~~~~~~--~~~~L~~L~l~~~~i~~  190 (321)
                      |..+..+++|++|++++|. ++.+|..  .+++|+.|++++|.+++
T Consensus       286 p~~~~~l~~L~~L~L~~N~-l~~lp~~~~~l~~L~~L~L~~N~l~~  330 (727)
T 4b8c_D          286 PAELGSCFQLKYFYFFDNM-VTTLPWEFGNLCNLQFLGVEGNPLEK  330 (727)
T ss_dssp             CSSGGGGTTCSEEECCSSC-CCCCCSSTTSCTTCCCEECTTSCCCS
T ss_pred             ChhhcCCCCCCEEECCCCC-CCccChhhhcCCCccEEeCCCCccCC
Confidence            7667667777777666653 2333332  23444444444444443

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=99.55  E-value=3.8e-15  Score=145.14  Aligned_cols=160  Identities=21%  Similarity=0.253  Sum_probs=89.5

Q ss_pred             HhhccccccccCCCCCCCCCCCCccEEEccCCCCCcccCccccCcccCcEEecCCCCCccccccc--ccCCccEEEeccc
Q 037308          109 INATCNKLIAKTPNPTLMPHLNKLVILNLRGSKSLKSLPSGIFNLEFLTKLDLSGCSKLKRLLEI--SSGNINWLFLRET  186 (321)
Q Consensus       109 l~l~~~~l~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~l~~l~~L~~L~l~~~~~~~~~~~~--~~~~L~~L~l~~~  186 (321)
                      +++.+|.+. ..+.  .+..+..|+.|+|++|.+ ..+|..+..+++|+.|+|++|... .+|..  .+++|++|++++|
T Consensus       206 ~~~~~n~~~-~~~~--~~~~l~~L~~L~Ls~n~l-~~l~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N  280 (727)
T 4b8c_D          206 DDDIENRMV-MPKD--SKYDDQLWHALDLSNLQI-FNISANIFKYDFLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHN  280 (727)
T ss_dssp             -------------------CCCCCCEEECTTSCC-SCCCGGGGGCCSCSCCBCTTSCCS-CCCGGGGGGTTCCEEECTTS
T ss_pred             cccccccee-cChh--hhccCCCCcEEECCCCCC-CCCChhhcCCCCCCEEEeeCCcCc-ccChhhhCCCCCCEEeCcCC
Confidence            444455555 4444  778888999999999884 467766667888888888886543 45442  4666777777777


Q ss_pred             cccccChhhhccCCCCeEecccCcccccccccccCCCCCCEEEecCCCCCCccccccCCCCC-CcEEEcccCCCc-ccch
Q 037308          187 AIEELPSSIERLLRLGHLDLSDCKRLKSLPSSLFKLKSLGVLNLGGCSNLQRLPECLGQLSS-PIILNLAKTNVE-RIPE  264 (321)
Q Consensus       187 ~i~~l~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~-L~~L~l~~n~l~-~l~~  264 (321)
                      .++.+|..+..+++|++|++++|.+. .+|..++.+++|+.|++++|.+.+.+|..+..+.. ...+++++|.++ .+|.
T Consensus       281 ~l~~lp~~~~~l~~L~~L~L~~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~~~~~l~l~~N~l~~~~p~  359 (727)
T 4b8c_D          281 RLTSLPAELGSCFQLKYFYFFDNMVT-TLPWEFGNLCNLQFLGVEGNPLEKQFLKILTEKSVTGLIFYLRDNRPEIPLPH  359 (727)
T ss_dssp             CCSSCCSSGGGGTTCSEEECCSSCCC-CCCSSTTSCTTCCCEECTTSCCCSHHHHHHHHHHHHHHHHHHHHCCCCCCCCC
T ss_pred             cCCccChhhcCCCCCCEEECCCCCCC-ccChhhhcCCCccEEeCCCCccCCCChHHHhhcchhhhHHhhccCcccCcCcc
Confidence            77777766777777777777776644 55656777777777777777766666655433211 123566666665 4443


Q ss_pred             hhhccCCcCEEeccCC
Q 037308          265 SIIQLFVLRYLLLSYS  280 (321)
Q Consensus       265 ~l~~l~~L~~L~l~~n  280 (321)
                            .|+.|+++.|
T Consensus       360 ------~l~~l~l~~n  369 (727)
T 4b8c_D          360 ------ERRFIEINTD  369 (727)
T ss_dssp             ------C---------
T ss_pred             ------ccceeEeecc
Confidence                  3444555554

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=99.54  E-value=6.2e-14  Score=114.24  Aligned_cols=125  Identities=22%  Similarity=0.198  Sum_probs=80.4

Q ss_pred             cEEecCCCCCcccccccccCCccEEEeccccccccChh--hhccCCCCeEecccCcccccccccccCCCCCCEEEecCCC
Q 037308          157 TKLDLSGCSKLKRLLEISSGNINWLFLRETAIEELPSS--IERLLRLGHLDLSDCKRLKSLPSSLFKLKSLGVLNLGGCS  234 (321)
Q Consensus       157 ~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~i~~l~~~--~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~~~  234 (321)
                      +.++++++. ++.+|...+.++++|++++|.+++++..  +..+++|++|++++|.+.+..|..+.++++|+.|++++|.
T Consensus        11 ~~l~~s~~~-l~~ip~~~~~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~   89 (192)
T 1w8a_A           11 TTVDCTGRG-LKEIPRDIPLHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENK   89 (192)
T ss_dssp             TEEECTTSC-CSSCCSCCCTTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCC
T ss_pred             CEEEcCCCC-cCcCccCCCCCCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCCc
Confidence            566666643 3455554455677777777777666542  5666677777777776666666666667777777777766


Q ss_pred             CCCccccccCCCCCCcEEEcccCCCccc-chhhhccCCcCEEeccCCCC
Q 037308          235 NLQRLPECLGQLSSPIILNLAKTNVERI-PESIIQLFVLRYLLLSYSER  282 (321)
Q Consensus       235 ~~~~~~~~~~~~~~L~~L~l~~n~l~~l-~~~l~~l~~L~~L~l~~n~~  282 (321)
                      +.+..+..+.++++|+.|++++|+++.+ |..+..+++|++|++++|+.
T Consensus        90 l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l  138 (192)
T 1w8a_A           90 IKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPF  138 (192)
T ss_dssp             CCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCB
T ss_pred             CCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCc
Confidence            6666555666667777777777776643 45566666777777777643

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=99.54  E-value=2.6e-14  Score=111.48  Aligned_cols=110  Identities=18%  Similarity=0.183  Sum_probs=97.3

Q ss_pred             cCCccEEEecccccc--ccChhhhccCCCCeEecccCcccccccccccCCCCCCEEEecCCCCCCccccccCCCCCCcEE
Q 037308          175 SGNINWLFLRETAIE--ELPSSIERLLRLGHLDLSDCKRLKSLPSSLFKLKSLGVLNLGGCSNLQRLPECLGQLSSPIIL  252 (321)
Q Consensus       175 ~~~L~~L~l~~~~i~--~l~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L  252 (321)
                      +++|+.|++++|.++  .+|..+..+++|++|++++|.+.+.  ..++.+++|+.|++++|.+.+.+|..+..+++|+.|
T Consensus        16 ~~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L   93 (149)
T 2je0_A           16 PSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHL   93 (149)
T ss_dssp             GGGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEE
T ss_pred             CccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEE
Confidence            567888888888888  6887788899999999999997765  668899999999999999888788888889999999


Q ss_pred             EcccCCCcccc--hhhhccCCcCEEeccCCCCccccc
Q 037308          253 NLAKTNVERIP--ESIIQLFVLRYLLLSYSERIQSVS  287 (321)
Q Consensus       253 ~l~~n~l~~l~--~~l~~l~~L~~L~l~~n~~l~~~~  287 (321)
                      ++++|.++.++  ..+..+++|++|++++| .++.++
T Consensus        94 ~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N-~l~~~~  129 (149)
T 2je0_A           94 NLSGNKIKDLSTIEPLKKLENLKSLDLFNC-EVTNLN  129 (149)
T ss_dssp             ECTTSCCCSHHHHGGGGGCTTCCEEECTTC-GGGGST
T ss_pred             ECCCCcCCChHHHHHHhhCCCCCEEeCcCC-cccchH
Confidence            99999999765  77899999999999999 777765

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}

Probab=99.52  E-value=6.8e-14  Score=123.72  Aligned_cols=123  Identities=12%  Similarity=0.118  Sum_probs=69.8

Q ss_pred             CCCceEEEEeecCCCCccccceeccCCCC--cCcccEEEecCCCCCCCCCcC-CcCceeEEeccCCcccccccCCCC---
Q 037308           28 MPKLRFLKFYSSSFNGENKCKVSYLQDPR--FAEVKYFHWHGYPLKSLPSNL-SAEKLVFLKVPYSDIEQLWNGEKH---  101 (321)
Q Consensus        28 l~~L~~L~l~~n~~~~~~~~~~~~~~~l~--~~~L~~l~l~~~~l~~~~~~~-~l~~L~~L~l~~~~l~~~~~~~~~---  101 (321)
                      ++++++|.+.++- .      ......++  .++|+.|++++|.+..+.... ..+.++.+.+..+.+..  ..+..   
T Consensus        24 ~~~l~~L~l~g~i-~------~~~~~~l~~~l~~L~~LdLs~n~i~~~~~~~~~~~~~~~~~~~~~~I~~--~aF~~~~~   94 (329)
T 3sb4_A           24 ANSITHLTLTGKL-N------AEDFRHLRDEFPSLKVLDISNAEIKMYSGKAGTYPNGKFYIYMANFVPA--YAFSNVVN   94 (329)
T ss_dssp             HHHCSEEEEEEEE-C------HHHHHHHHHSCTTCCEEEEEEEEECCEEESSSSSGGGCCEEECTTEECT--TTTEEEET
T ss_pred             hCceeEEEEeccc-c------HHHHHHHHHhhccCeEEecCcceeEEecCccccccccccccccccccCH--HHhccccc
Confidence            4578899998752 1      11111222  277999999988877221111 22224444444444332  33445   


Q ss_pred             -----CCChHhHHhhccccccccCCCCCCCCCCCCccEEEccCCCCCcccCccccCcccCcEEecCC
Q 037308          102 -----YSNLNQIINATCNKLIAKTPNPTLMPHLNKLVILNLRGSKSLKSLPSGIFNLEFLTKLDLSG  163 (321)
Q Consensus       102 -----l~~L~~~l~l~~~~l~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~l~~l~~L~~L~l~~  163 (321)
                           +++|++ +++.. .++ .++. ..|.++++|+.+++++|.+....+..|..+.++..+....
T Consensus        95 ~~~~g~~~L~~-l~L~~-~i~-~I~~-~aF~~~~~L~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~  157 (329)
T 3sb4_A           95 GVTKGKQTLEK-VILSE-KIK-NIED-AAFKGCDNLKICQIRKKTAPNLLPEALADSVTAIFIPLGS  157 (329)
T ss_dssp             TEEEECTTCCC--CBCT-TCC-EECT-TTTTTCTTCCEEEBCCSSCCEECTTSSCTTTCEEEECTTC
T ss_pred             ccccccCCCcE-EECCc-ccc-chhH-HHhhcCcccceEEcCCCCccccchhhhcCCCceEEecCcc
Confidence                 677777 77766 666 5542 3678888888888888765444444566666666555443

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=99.52  E-value=4.8e-14  Score=113.21  Aligned_cols=129  Identities=21%  Similarity=0.133  Sum_probs=81.5

Q ss_pred             CCCCCCccEEEccCCCCCcccCccccCcc-cCcEEecCCCCCcccccccccCCccEEEeccccccccChhhhccCCCCeE
Q 037308          126 MPHLNKLVILNLRGSKSLKSLPSGIFNLE-FLTKLDLSGCSKLKRLLEISSGNINWLFLRETAIEELPSSIERLLRLGHL  204 (321)
Q Consensus       126 ~~~l~~L~~L~l~~n~~~~~~p~~l~~l~-~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~i~~l~~~~~~l~~L~~L  204 (321)
                      +..+.+|+.|++++|.+. .+|. +..+. +|++|++++                      |.++++ ..+..+++|++|
T Consensus        15 ~~~~~~L~~L~l~~n~l~-~i~~-~~~~~~~L~~L~Ls~----------------------N~l~~~-~~l~~l~~L~~L   69 (176)
T 1a9n_A           15 YTNAVRDRELDLRGYKIP-VIEN-LGATLDQFDAIDFSD----------------------NEIRKL-DGFPLLRRLKTL   69 (176)
T ss_dssp             EECTTSCEEEECTTSCCC-SCCC-GGGGTTCCSEEECCS----------------------SCCCEE-CCCCCCSSCCEE
T ss_pred             cCCcCCceEEEeeCCCCc-hhHH-hhhcCCCCCEEECCC----------------------CCCCcc-cccccCCCCCEE
Confidence            445666777777776633 3343 33332 555555555                      444444 235566677777


Q ss_pred             ecccCcccccccccccCCCCCCEEEecCCCCCCcccc--ccCCCCCCcEEEcccCCCcccchh----hhccCCcCEEecc
Q 037308          205 DLSDCKRLKSLPSSLFKLKSLGVLNLGGCSNLQRLPE--CLGQLSSPIILNLAKTNVERIPES----IIQLFVLRYLLLS  278 (321)
Q Consensus       205 ~l~~n~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~--~~~~~~~L~~L~l~~n~l~~l~~~----l~~l~~L~~L~l~  278 (321)
                      ++++|.+.+..+..+..+++|+.|++++|.+ +.+|.  .+..+++|+.|++++|.++.+|..    +..+++|+.|+++
T Consensus        70 ~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i-~~~~~~~~l~~l~~L~~L~l~~N~i~~~~~~~~~~~~~l~~L~~Ld~~  148 (176)
T 1a9n_A           70 LVNNNRICRIGEGLDQALPDLTELILTNNSL-VELGDLDPLASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLDFQ  148 (176)
T ss_dssp             ECCSSCCCEECSCHHHHCTTCCEEECCSCCC-CCGGGGGGGGGCTTCCEEECCSSGGGGSTTHHHHHHHHCTTCSEETTE
T ss_pred             ECCCCcccccCcchhhcCCCCCEEECCCCcC-CcchhhHhhhcCCCCCEEEecCCCCCCcHhHHHHHHHHCCccceeCCC
Confidence            7777776554434446777777777777665 33444  666777788888888887777654    6777888888887


Q ss_pred             CC
Q 037308          279 YS  280 (321)
Q Consensus       279 ~n  280 (321)
                      +|
T Consensus       149 ~n  150 (176)
T 1a9n_A          149 KV  150 (176)
T ss_dssp             EC
T ss_pred             cC
Confidence            77

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=99.50  E-value=2.2e-13  Score=109.35  Aligned_cols=126  Identities=18%  Similarity=0.187  Sum_probs=79.7

Q ss_pred             cEEecCCCCCcccccccccCCccEEEeccccccccChh-hhccCCCCeEecccCcccccccccccCCCCCCEEEecCCCC
Q 037308          157 TKLDLSGCSKLKRLLEISSGNINWLFLRETAIEELPSS-IERLLRLGHLDLSDCKRLKSLPSSLFKLKSLGVLNLGGCSN  235 (321)
Q Consensus       157 ~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~i~~l~~~-~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~~~~  235 (321)
                      +.++++++. ++.+|...+++|+.|++++|.+++++.. +..+++|++|++++|.+.+..+..++.+++|+.|++++|.+
T Consensus        10 ~~l~~~~~~-l~~~p~~~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l   88 (177)
T 2o6r_A           10 TEIRCNSKG-LTSVPTGIPSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKL   88 (177)
T ss_dssp             TEEECCSSC-CSSCCTTCCTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC
T ss_pred             CEEEecCCC-CccCCCCCCCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCCCCc
Confidence            344444422 2333333345566666666666665543 56667777777777776655555567777777777777776


Q ss_pred             CCccccccCCCCCCcEEEcccCCCcccchh-hhccCCcCEEeccCCCCc
Q 037308          236 LQRLPECLGQLSSPIILNLAKTNVERIPES-IIQLFVLRYLLLSYSERI  283 (321)
Q Consensus       236 ~~~~~~~~~~~~~L~~L~l~~n~l~~l~~~-l~~l~~L~~L~l~~n~~l  283 (321)
                      .+..+..+..+++|+.|++++|.++.+|.. +..+++|++|++++|+..
T Consensus        89 ~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~  137 (177)
T 2o6r_A           89 QSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWD  137 (177)
T ss_dssp             CCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred             cccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCCCee
Confidence            665555567777777777777777766653 466777777777777433

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=99.49  E-value=2.5e-16  Score=150.10  Aligned_cols=200  Identities=14%  Similarity=0.039  Sum_probs=122.8

Q ss_pred             CcCceeEEeccCCccccc--ccCCCCCCChHhHHhhcccccccc-CCCCCCCCCCCCccEEEccCC---------CCCcc
Q 037308           78 SAEKLVFLKVPYSDIEQL--WNGEKHYSNLNQIINATCNKLIAK-TPNPTLMPHLNKLVILNLRGS---------KSLKS  145 (321)
Q Consensus        78 ~l~~L~~L~l~~~~l~~~--~~~~~~l~~L~~~l~l~~~~l~~~-~~~~~~~~~l~~L~~L~l~~n---------~~~~~  145 (321)
                      .+++|++|++++|.++..  ......+++|+. ++++.+ +... ++.  ....+++|++|+++++         .+...
T Consensus       287 ~~~~L~~L~L~~~~l~~~~l~~~~~~~~~L~~-L~l~~~-~~~~~l~~--l~~~~~~L~~L~L~~~~~~g~~~~~~l~~~  362 (594)
T 2p1m_B          287 VCSRLTTLNLSYATVQSYDLVKLLCQCPKLQR-LWVLDY-IEDAGLEV--LASTCKDLRELRVFPSEPFVMEPNVALTEQ  362 (594)
T ss_dssp             HHTTCCEEECTTCCCCHHHHHHHHTTCTTCCE-EEEEGG-GHHHHHHH--HHHHCTTCCEEEEECSCTTCSSCSSCCCHH
T ss_pred             hhCCCCEEEccCCCCCHHHHHHHHhcCCCcCE-EeCcCc-cCHHHHHH--HHHhCCCCCEEEEecCcccccccCCCCCHH
Confidence            467888888888876531  122346677777 777655 3311 111  2234778888888432         22111


Q ss_pred             c-CccccCcccCcEEecCCCCCccccccc---ccCCccEEEec--c----ccccccC------hhhhccCCCCeEecccC
Q 037308          146 L-PSGIFNLEFLTKLDLSGCSKLKRLLEI---SSGNINWLFLR--E----TAIEELP------SSIERLLRLGHLDLSDC  209 (321)
Q Consensus       146 ~-p~~l~~l~~L~~L~l~~~~~~~~~~~~---~~~~L~~L~l~--~----~~i~~l~------~~~~~l~~L~~L~l~~n  209 (321)
                      . ......+++|+.|.++.+.........   .+++|+.|+++  +    +.++..|      ..+..+++|++|++++ 
T Consensus       363 ~l~~l~~~~~~L~~L~~~~~~l~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~l~~~~~~L~~L~L~~-  441 (594)
T 2p1m_B          363 GLVSVSMGCPKLESVLYFCRQMTNAALITIARNRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSLSG-  441 (594)
T ss_dssp             HHHHHHHHCTTCCEEEEEESCCCHHHHHHHHHHCTTCCEEEEEESSTTCCCTTTCCCTHHHHHHHHHHCTTCCEEECCS-
T ss_pred             HHHHHHHhchhHHHHHHhcCCcCHHHHHHHHhhCCCcceeEeecccCCCcccccCCchhhHHHHHHhhCCCccEEeecC-
Confidence            1 111124778888866654432222111   36788888888  3    4555333      2256678888888876 


Q ss_pred             cccccccccccC-CCCCCEEEecCCCCCCcccccc-CCCCCCcEEEcccCCCcc--cchhhhccCCcCEEeccCCCC
Q 037308          210 KRLKSLPSSLFK-LKSLGVLNLGGCSNLQRLPECL-GQLSSPIILNLAKTNVER--IPESIIQLFVLRYLLLSYSER  282 (321)
Q Consensus       210 ~~~~~~~~~~~~-l~~L~~L~l~~~~~~~~~~~~~-~~~~~L~~L~l~~n~l~~--l~~~l~~l~~L~~L~l~~n~~  282 (321)
                      .+.+.....++. +++|+.|++++|.+.+.....+ ..+++|+.|++++|.++.  +...+..+++|++|++++|+.
T Consensus       442 ~l~~~~~~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~~~~~  518 (594)
T 2p1m_B          442 LLTDKVFEYIGTYAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPFGDKALLANASKLETMRSLWMSSCSV  518 (594)
T ss_dssp             SCCHHHHHHHHHHCTTCCEEEEESCCSSHHHHHHHHHHCTTCCEEEEESCSCCHHHHHHTGGGGGGSSEEEEESSCC
T ss_pred             cccHHHHHHHHHhchhccEeeccCCCCcHHHHHHHHhcCCCcCEEECcCCCCcHHHHHHHHHhCCCCCEEeeeCCCC
Confidence            555544444444 7889999998887655444443 567889999999888862  223445688899999988854

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=99.46  E-value=1.9e-13  Score=109.74  Aligned_cols=124  Identities=15%  Similarity=0.067  Sum_probs=99.3

Q ss_pred             cCCccEEEeccccccccChhhhcc-CCCCeEecccCcccccccccccCCCCCCEEEecCCCCCCccccccCCCCCCcEEE
Q 037308          175 SGNINWLFLRETAIEELPSSIERL-LRLGHLDLSDCKRLKSLPSSLFKLKSLGVLNLGGCSNLQRLPECLGQLSSPIILN  253 (321)
Q Consensus       175 ~~~L~~L~l~~~~i~~l~~~~~~l-~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~  253 (321)
                      +.+|+.|++++|.++.++. +..+ ++|++|++++|.+.+.  ..++.+++|+.|++++|.+.+..+..+..+++|+.|+
T Consensus        18 ~~~L~~L~l~~n~l~~i~~-~~~~~~~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~   94 (176)
T 1a9n_A           18 AVRDRELDLRGYKIPVIEN-LGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELI   94 (176)
T ss_dssp             TTSCEEEECTTSCCCSCCC-GGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCEEE
T ss_pred             cCCceEEEeeCCCCchhHH-hhhcCCCCCEEECCCCCCCcc--cccccCCCCCEEECCCCcccccCcchhhcCCCCCEEE
Confidence            5677777887888887765 4444 4999999999998765  5688999999999999987755445558899999999


Q ss_pred             cccCCCcccch--hhhccCCcCEEeccCCCCccccc--------CccccccccccccCc
Q 037308          254 LAKTNVERIPE--SIIQLFVLRYLLLSYSERIQSVS--------LPLARGILEDTQRSP  302 (321)
Q Consensus       254 l~~n~l~~l~~--~l~~l~~L~~L~l~~n~~l~~~~--------~~~~l~~l~~~~~~~  302 (321)
                      +++|.++.+|.  .+..+++|++|++++| .+..+|        ..+.++.|+...+..
T Consensus        95 L~~N~i~~~~~~~~l~~l~~L~~L~l~~N-~i~~~~~~~~~~~~~l~~L~~Ld~~~n~~  152 (176)
T 1a9n_A           95 LTNNSLVELGDLDPLASLKSLTYLCILRN-PVTNKKHYRLYVIYKVPQVRVLDFQKVKL  152 (176)
T ss_dssp             CCSCCCCCGGGGGGGGGCTTCCEEECCSS-GGGGSTTHHHHHHHHCTTCSEETTEECCH
T ss_pred             CCCCcCCcchhhHhhhcCCCCCEEEecCC-CCCCcHhHHHHHHHHCCccceeCCCcCCH
Confidence            99999999887  7889999999999999 666665        124667777666543

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=99.42  E-value=1.3e-12  Score=106.43  Aligned_cols=86  Identities=22%  Similarity=0.165  Sum_probs=65.6

Q ss_pred             cCCccEEEeccccccccC-hhhhccCCCCeEecccCcccccccccccCCCCCCEEEecCCCCCCccccccCCCCCCcEEE
Q 037308          175 SGNINWLFLRETAIEELP-SSIERLLRLGHLDLSDCKRLKSLPSSLFKLKSLGVLNLGGCSNLQRLPECLGQLSSPIILN  253 (321)
Q Consensus       175 ~~~L~~L~l~~~~i~~l~-~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~  253 (321)
                      +++|+.|++++|.+++++ ..+..+++|++|++++|.+.+..+..+..+++|+.|++++|.+.+..+..+..+++|+.|+
T Consensus        53 l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~  132 (193)
T 2wfh_A           53 YKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLA  132 (193)
T ss_dssp             CTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEE
T ss_pred             ccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCccCEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEE
Confidence            334444555555566655 3477888888999998888877777788889999999998887766656788889999999


Q ss_pred             cccCCCc
Q 037308          254 LAKTNVE  260 (321)
Q Consensus       254 l~~n~l~  260 (321)
                      +++|.+.
T Consensus       133 L~~N~~~  139 (193)
T 2wfh_A          133 IGANPLY  139 (193)
T ss_dssp             CCSSCEE
T ss_pred             eCCCCee
Confidence            9999886

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=99.39  E-value=5.4e-12  Score=101.18  Aligned_cols=87  Identities=21%  Similarity=0.151  Sum_probs=66.2

Q ss_pred             cCCccEEEeccccccccChh-hhccCCCCeEecccCcccccccccccCCCCCCEEEecCCCCCCccccccCCCCCCcEEE
Q 037308          175 SGNINWLFLRETAIEELPSS-IERLLRLGHLDLSDCKRLKSLPSSLFKLKSLGVLNLGGCSNLQRLPECLGQLSSPIILN  253 (321)
Q Consensus       175 ~~~L~~L~l~~~~i~~l~~~-~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~  253 (321)
                      +++|++|++++|.++.++.. +..+++|++|++++|.+.+..+..+..+++|+.|++++|.+.+..+..+..+++|+.|+
T Consensus        51 l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~  130 (177)
T 2o6r_A           51 LTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIW  130 (177)
T ss_dssp             CTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEE
T ss_pred             cccccEEECCCCcceEeChhHccCCCccCEEECCCCCccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEE
Confidence            34555555555666666643 57788899999999888776666778889999999999887765555678889999999


Q ss_pred             cccCCCcc
Q 037308          254 LAKTNVER  261 (321)
Q Consensus       254 l~~n~l~~  261 (321)
                      +++|.++.
T Consensus       131 l~~N~~~~  138 (177)
T 2o6r_A          131 LHTNPWDC  138 (177)
T ss_dssp             CCSSCBCC
T ss_pred             ecCCCeec
Confidence            99998873

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=99.39  E-value=2.1e-12  Score=103.43  Aligned_cols=105  Identities=17%  Similarity=0.121  Sum_probs=60.7

Q ss_pred             cEEecCCCCCcccccccccCCccEEEeccccccccC-hhhhccCCCCeEecccCcccccccccccCCCCCCEEEecCCCC
Q 037308          157 TKLDLSGCSKLKRLLEISSGNINWLFLRETAIEELP-SSIERLLRLGHLDLSDCKRLKSLPSSLFKLKSLGVLNLGGCSN  235 (321)
Q Consensus       157 ~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~i~~l~-~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~~~~  235 (321)
                      +.++++++. ++.+|...+.+|++|++++|.+++++ ..+..+++|++|++++|.+.+..+..+..+++|+.|++++|.+
T Consensus        15 ~~l~~~~n~-l~~iP~~~~~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~l   93 (174)
T 2r9u_A           15 TLVNCQNIR-LASVPAGIPTDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNHL   93 (174)
T ss_dssp             SEEECCSSC-CSSCCSCCCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC
T ss_pred             cEEEeCCCC-CCccCCCcCCCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCCcc
Confidence            456666643 34455443556666666666666653 3455666666666666665554444455666666666666655


Q ss_pred             CCccccccCCCCCCcEEEcccCCCccc
Q 037308          236 LQRLPECLGQLSSPIILNLAKTNVERI  262 (321)
Q Consensus       236 ~~~~~~~~~~~~~L~~L~l~~n~l~~l  262 (321)
                      .+..+..+..+++|+.|++++|.+...
T Consensus        94 ~~l~~~~~~~l~~L~~L~L~~N~~~c~  120 (174)
T 2r9u_A           94 KSIPRGAFDNLKSLTHIYLYNNPWDCE  120 (174)
T ss_dssp             CCCCTTTTTTCTTCSEEECCSSCBCTT
T ss_pred             ceeCHHHhccccCCCEEEeCCCCcccc
Confidence            544434456666666666666666533

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=99.38  E-value=2.2e-12  Score=102.87  Aligned_cols=105  Identities=23%  Similarity=0.179  Sum_probs=66.0

Q ss_pred             cCcEEecCCCCCcccccccccCCccEEEeccccccccC-hhhhccCCCCeEecccCcccccccccccCCCCCCEEEecCC
Q 037308          155 FLTKLDLSGCSKLKRLLEISSGNINWLFLRETAIEELP-SSIERLLRLGHLDLSDCKRLKSLPSSLFKLKSLGVLNLGGC  233 (321)
Q Consensus       155 ~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~i~~l~-~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~~  233 (321)
                      +.+.++++++. ++.+|...+.+|++|++++|.+++++ ..+..+++|++|++++|.+.+..+..+..+++|+.|++++|
T Consensus        10 ~~~~l~~s~n~-l~~ip~~~~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N   88 (170)
T 3g39_A           10 SGTTVDCSGKS-LASVPTGIPTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDN   88 (170)
T ss_dssp             ETTEEECTTSC-CSSCCSCCCTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred             CCCEEEeCCCC-cCccCccCCCCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCCC
Confidence            34566776643 44455444566777777777776653 34666667777777776666555555666677777777766


Q ss_pred             CCCCccccccCCCCCCcEEEcccCCCc
Q 037308          234 SNLQRLPECLGQLSSPIILNLAKTNVE  260 (321)
Q Consensus       234 ~~~~~~~~~~~~~~~L~~L~l~~n~l~  260 (321)
                      .+.+..+..+..+++|+.|++++|.++
T Consensus        89 ~l~~~~~~~~~~l~~L~~L~L~~N~~~  115 (170)
T 3g39_A           89 QLKSIPRGAFDNLKSLTHIWLLNNPWD  115 (170)
T ss_dssp             CCCCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred             ccCEeCHHHhcCCCCCCEEEeCCCCCC
Confidence            665555455666667777777777665

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=99.37  E-value=1.5e-14  Score=118.43  Aligned_cols=125  Identities=21%  Similarity=0.099  Sum_probs=82.4

Q ss_pred             cccCcccCcEEecCCCCCccccccc-ccCCccEEEeccccccccChhhhccCCCCeEecccCcccccccccccCCCCCCE
Q 037308          149 GIFNLEFLTKLDLSGCSKLKRLLEI-SSGNINWLFLRETAIEELPSSIERLLRLGHLDLSDCKRLKSLPSSLFKLKSLGV  227 (321)
Q Consensus       149 ~l~~l~~L~~L~l~~~~~~~~~~~~-~~~~L~~L~l~~~~i~~l~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~  227 (321)
                      .+..+++|+.|++++|.. +.++.. .+++|++|++++|.++.+|..+..+++|++|++++|.+.+ +| .+..+++|+.
T Consensus        43 ~~~~l~~L~~L~ls~n~l-~~l~~~~~l~~L~~L~l~~n~l~~l~~~~~~~~~L~~L~L~~N~l~~-l~-~~~~l~~L~~  119 (198)
T 1ds9_A           43 TLSTLKACKHLALSTNNI-EKISSLSGMENLRILSLGRNLIKKIENLDAVADTLEELWISYNQIAS-LS-GIEKLVNLRV  119 (198)
T ss_dssp             HHHHTTTCSEEECSEEEE-SCCCCHHHHTTCCEEEEEEEEECSCSSHHHHHHHCSEEEEEEEECCC-HH-HHHHHHHSSE
T ss_pred             HHhcCCCCCEEECCCCCC-ccccccccCCCCCEEECCCCCcccccchhhcCCcCCEEECcCCcCCc-CC-ccccCCCCCE
Confidence            566677777777776543 334422 4567777777777777777666666778888888777655 33 4667777778


Q ss_pred             EEecCCCCCCccc-cccCCCCCCcEEEcccCCCcccc-h----------hhhccCCcCEEe
Q 037308          228 LNLGGCSNLQRLP-ECLGQLSSPIILNLAKTNVERIP-E----------SIIQLFVLRYLL  276 (321)
Q Consensus       228 L~l~~~~~~~~~~-~~~~~~~~L~~L~l~~n~l~~l~-~----------~l~~l~~L~~L~  276 (321)
                      |++++|.+.+..+ ..+..+++|+.|++++|.++..+ .          .+..+++|++|+
T Consensus       120 L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~l~~L~~Ld  180 (198)
T 1ds9_A          120 LYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD  180 (198)
T ss_dssp             EEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHHHHTTTTHHHHHHHHHHHCSSCSEEC
T ss_pred             EECCCCcCCchhHHHHHhcCCCCCEEEecCCccccccccccchHHHHHHHHHhCCCcEEEC
Confidence            8877776554221 35677777888888877776332 1          256677777775

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A

Probab=99.33  E-value=6.8e-11  Score=107.18  Aligned_cols=217  Identities=13%  Similarity=0.053  Sum_probs=148.9

Q ss_pred             cCcccEEEecCCCCCCCCCc-CCcCceeEEeccCCcccccc-cCCCCCCChHhHHhhccccccccCCCCCCCCCCCCccE
Q 037308           57 FAEVKYFHWHGYPLKSLPSN-LSAEKLVFLKVPYSDIEQLW-NGEKHYSNLNQIINATCNKLIAKTPNPTLMPHLNKLVI  134 (321)
Q Consensus        57 ~~~L~~l~l~~~~l~~~~~~-~~l~~L~~L~l~~~~l~~~~-~~~~~l~~L~~~l~l~~~~l~~~~~~~~~~~~l~~L~~  134 (321)
                      ..+|+.+.+..+ +..++.. +.-.+|+.+.+.+ .++.+. ..+..+++|+. +++..|.++ .++. ..|. +.+|+.
T Consensus       134 ~~~L~~i~l~~~-i~~I~~~aF~~~~L~~i~lp~-~l~~I~~~aF~~c~~L~~-l~l~~n~l~-~I~~-~aF~-~~~L~~  207 (401)
T 4fdw_A          134 NSQIAKVVLNEG-LKSIGDMAFFNSTVQEIVFPS-TLEQLKEDIFYYCYNLKK-ADLSKTKIT-KLPA-STFV-YAGIEE  207 (401)
T ss_dssp             TCCCSEEECCTT-CCEECTTTTTTCCCCEEECCT-TCCEECSSTTTTCTTCCE-EECTTSCCS-EECT-TTTT-TCCCSE
T ss_pred             cCCccEEEeCCC-ccEECHHhcCCCCceEEEeCC-CccEehHHHhhCcccCCe-eecCCCcce-Eech-hhEe-ecccCE
Confidence            356777777654 5555443 3334688888865 555554 35566777877 888777777 6664 1343 578888


Q ss_pred             EEccCCCCCcccCccccCcccCcEEecCCCCCccccccc--ccCCccEEEeccccccccCh-hhhccCCCCeEecccCcc
Q 037308          135 LNLRGSKSLKSLPSGIFNLEFLTKLDLSGCSKLKRLLEI--SSGNINWLFLRETAIEELPS-SIERLLRLGHLDLSDCKR  211 (321)
Q Consensus       135 L~l~~n~~~~~~p~~l~~l~~L~~L~l~~~~~~~~~~~~--~~~~L~~L~l~~~~i~~l~~-~~~~l~~L~~L~l~~n~~  211 (321)
                      +.+..+ +...-...|.++++|+.+++..+  +..++..  ...+|+.+.+. +.++.++. .+.++++|+.+++.++..
T Consensus       208 l~lp~~-l~~I~~~aF~~~~~L~~l~l~~~--l~~I~~~aF~~~~L~~i~lp-~~i~~I~~~aF~~c~~L~~l~l~~~~~  283 (401)
T 4fdw_A          208 VLLPVT-LKEIGSQAFLKTSQLKTIEIPEN--VSTIGQEAFRESGITTVKLP-NGVTNIASRAFYYCPELAEVTTYGSTF  283 (401)
T ss_dssp             EECCTT-CCEECTTTTTTCTTCCCEECCTT--CCEECTTTTTTCCCSEEEEE-TTCCEECTTTTTTCTTCCEEEEESSCC
T ss_pred             EEeCCc-hheehhhHhhCCCCCCEEecCCC--ccCccccccccCCccEEEeC-CCccEEChhHhhCCCCCCEEEeCCccc
Confidence            888754 23333345778888888888763  3333332  23678888884 55777764 578889999999988664


Q ss_pred             c-----ccccccccCCCCCCEEEecCCCCCCccccccCCCCCCcEEEcccCCCcccc-hhhhccCCcCEEeccCCCCccc
Q 037308          212 L-----KSLPSSLFKLKSLGVLNLGGCSNLQRLPECLGQLSSPIILNLAKTNVERIP-ESIIQLFVLRYLLLSYSERIQS  285 (321)
Q Consensus       212 ~-----~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~l~-~~l~~l~~L~~L~l~~n~~l~~  285 (321)
                      .     ...+..|.++++|+.+.+.. .+...-..+|.++++|+.+++..+ ++.+. ..|..+ +|+++++.+| .+..
T Consensus       284 ~~~~~~~I~~~aF~~c~~L~~l~l~~-~i~~I~~~aF~~c~~L~~l~lp~~-l~~I~~~aF~~~-~L~~l~l~~n-~~~~  359 (401)
T 4fdw_A          284 NDDPEAMIHPYCLEGCPKLARFEIPE-SIRILGQGLLGGNRKVTQLTIPAN-VTQINFSAFNNT-GIKEVKVEGT-TPPQ  359 (401)
T ss_dssp             CCCTTCEECTTTTTTCTTCCEECCCT-TCCEECTTTTTTCCSCCEEEECTT-CCEECTTSSSSS-CCCEEEECCS-SCCB
T ss_pred             cCCcccEECHHHhhCCccCCeEEeCC-ceEEEhhhhhcCCCCccEEEECcc-ccEEcHHhCCCC-CCCEEEEcCC-CCcc
Confidence            3     24456788999999999985 444444568889999999999555 77776 467788 9999999998 5555


Q ss_pred             cc
Q 037308          286 VS  287 (321)
Q Consensus       286 ~~  287 (321)
                      ++
T Consensus       360 l~  361 (401)
T 4fdw_A          360 VF  361 (401)
T ss_dssp             CC
T ss_pred             cc
Confidence            44

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A

Probab=99.33  E-value=5.6e-11  Score=107.74  Aligned_cols=241  Identities=8%  Similarity=0.041  Sum_probs=174.0

Q ss_pred             ccChhhhcCCCCceEEEEeecCCCCccccceeccCCCCcCcccEEEecCCCCCCCCCc-C-CcCceeEEeccCCcccccc
Q 037308           19 RLNLSTFTKMPKLRFLKFYSSSFNGENKCKVSYLQDPRFAEVKYFHWHGYPLKSLPSN-L-SAEKLVFLKVPYSDIEQLW   96 (321)
Q Consensus        19 ~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~l~~~~L~~l~l~~~~l~~~~~~-~-~l~~L~~L~l~~~~l~~~~   96 (321)
                      .+...+|..+ +|+.+.+..+-       .......+...+|+.+.+.. .+..++.. + ++++|+.+++++|.++.++
T Consensus       126 ~I~~~aF~~~-~L~~i~l~~~i-------~~I~~~aF~~~~L~~i~lp~-~l~~I~~~aF~~c~~L~~l~l~~n~l~~I~  196 (401)
T 4fdw_A          126 SIPKDAFRNS-QIAKVVLNEGL-------KSIGDMAFFNSTVQEIVFPS-TLEQLKEDIFYYCYNLKKADLSKTKITKLP  196 (401)
T ss_dssp             EECTTTTTTC-CCSEEECCTTC-------CEECTTTTTTCCCCEEECCT-TCCEECSSTTTTCTTCCEEECTTSCCSEEC
T ss_pred             EehHhhcccC-CccEEEeCCCc-------cEECHHhcCCCCceEEEeCC-CccEehHHHhhCcccCCeeecCCCcceEec
Confidence            4445677774 79999987652       11222333447799999985 56666654 4 7999999999999999998


Q ss_pred             cCCCCCCChHhHHhhccccccccCCCCCCCCCCCCccEEEccCCCCCcccC-ccccCcccCcEEecCCCCCccccccc--
Q 037308           97 NGEKHYSNLNQIINATCNKLIAKTPNPTLMPHLNKLVILNLRGSKSLKSLP-SGIFNLEFLTKLDLSGCSKLKRLLEI--  173 (321)
Q Consensus        97 ~~~~~l~~L~~~l~l~~~~l~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p-~~l~~l~~L~~L~l~~~~~~~~~~~~--  173 (321)
                      .+.+...+++. +.+..+ ++ .++. ..|.++.+|+.+++..+  +..++ ..|.+ .+|+.+.+..+  +..++..  
T Consensus       197 ~~aF~~~~L~~-l~lp~~-l~-~I~~-~aF~~~~~L~~l~l~~~--l~~I~~~aF~~-~~L~~i~lp~~--i~~I~~~aF  267 (401)
T 4fdw_A          197 ASTFVYAGIEE-VLLPVT-LK-EIGS-QAFLKTSQLKTIEIPEN--VSTIGQEAFRE-SGITTVKLPNG--VTNIASRAF  267 (401)
T ss_dssp             TTTTTTCCCSE-EECCTT-CC-EECT-TTTTTCTTCCCEECCTT--CCEECTTTTTT-CCCSEEEEETT--CCEECTTTT
T ss_pred             hhhEeecccCE-EEeCCc-hh-eehh-hHhhCCCCCCEEecCCC--ccCcccccccc-CCccEEEeCCC--ccEEChhHh
Confidence            87777788888 888633 55 5442 37899999999999885  34443 34655 78999999652  3333332  


Q ss_pred             -ccCCccEEEecccccc-----ccCh-hhhccCCCCeEecccCcccccccccccCCCCCCEEEecCCCCCCccccccCCC
Q 037308          174 -SSGNINWLFLRETAIE-----ELPS-SIERLLRLGHLDLSDCKRLKSLPSSLFKLKSLGVLNLGGCSNLQRLPECLGQL  246 (321)
Q Consensus       174 -~~~~L~~L~l~~~~i~-----~l~~-~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~  246 (321)
                       .+.+|+.+++.++.+.     .++. .+.++++|+.+.+.. .+.......|.++.+|+.+.+.. ++...-..+|.++
T Consensus       268 ~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~~-~i~~I~~~aF~~c~~L~~l~lp~-~l~~I~~~aF~~~  345 (401)
T 4fdw_A          268 YYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIPE-SIRILGQGLLGGNRKVTQLTIPA-NVTQINFSAFNNT  345 (401)
T ss_dssp             TTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCCT-TCCEECTTTTTTCCSCCEEEECT-TCCEECTTSSSSS
T ss_pred             hCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeCC-ceEEEhhhhhcCCCCccEEEECc-cccEEcHHhCCCC
Confidence             5789999999887765     4664 588999999999984 56666667889999999999976 4444445688899


Q ss_pred             CCCcEEEcccCCCcccch-hhhccC-CcCEEeccCC
Q 037308          247 SSPIILNLAKTNVERIPE-SIIQLF-VLRYLLLSYS  280 (321)
Q Consensus       247 ~~L~~L~l~~n~l~~l~~-~l~~l~-~L~~L~l~~n  280 (321)
                       +|+.+++.+|.+..++. .+..++ .++.|++-.+
T Consensus       346 -~L~~l~l~~n~~~~l~~~~F~~~~~~l~~l~vp~~  380 (401)
T 4fdw_A          346 -GIKEVKVEGTTPPQVFEKVWYGFPDDITVIRVPAE  380 (401)
T ss_dssp             -CCCEEEECCSSCCBCCCSSCCCSCTTCCEEEECGG
T ss_pred             -CCCEEEEcCCCCcccccccccCCCCCccEEEeCHH
Confidence             99999999998887663 444453 5556655544

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=99.30  E-value=1.6e-11  Score=97.81  Aligned_cols=104  Identities=18%  Similarity=0.143  Sum_probs=86.7

Q ss_pred             CccEEEeccccccccChhhhccCCCCeEecccCcccccccccccCCCCCCEEEecCCCCCCccccccCCCCCCcEEEccc
Q 037308          177 NINWLFLRETAIEELPSSIERLLRLGHLDLSDCKRLKSLPSSLFKLKSLGVLNLGGCSNLQRLPECLGQLSSPIILNLAK  256 (321)
Q Consensus       177 ~L~~L~l~~~~i~~l~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~  256 (321)
                      ..+.++++++.++++|..+  .+++++|++++|.+.+..+..+.++++|+.|++++|.+.+..+..|..+++|+.|++++
T Consensus        10 ~~~~l~~s~n~l~~ip~~~--~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~   87 (170)
T 3g39_A           10 SGTTVDCSGKSLASVPTGI--PTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLND   87 (170)
T ss_dssp             ETTEEECTTSCCSSCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred             CCCEEEeCCCCcCccCccC--CCCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCC
Confidence            4578889999999888655  37889999999988887788888999999999999888776666778899999999999


Q ss_pred             CCCcccch-hhhccCCcCEEeccCCCC
Q 037308          257 TNVERIPE-SIIQLFVLRYLLLSYSER  282 (321)
Q Consensus       257 n~l~~l~~-~l~~l~~L~~L~l~~n~~  282 (321)
                      |+++.++. .+..+++|++|++++|+.
T Consensus        88 N~l~~~~~~~~~~l~~L~~L~L~~N~~  114 (170)
T 3g39_A           88 NQLKSIPRGAFDNLKSLTHIWLLNNPW  114 (170)
T ss_dssp             SCCCCCCTTTTTTCTTCCEEECCSSCB
T ss_pred             CccCEeCHHHhcCCCCCCEEEeCCCCC
Confidence            99998875 578889999999999843

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=99.29  E-value=2.2e-11  Score=97.38  Aligned_cols=102  Identities=17%  Similarity=0.160  Sum_probs=84.9

Q ss_pred             ccEEEeccccccccChhhhccCCCCeEecccCcccccccccccCCCCCCEEEecCCCCCCccccccCCCCCCcEEEcccC
Q 037308          178 INWLFLRETAIEELPSSIERLLRLGHLDLSDCKRLKSLPSSLFKLKSLGVLNLGGCSNLQRLPECLGQLSSPIILNLAKT  257 (321)
Q Consensus       178 L~~L~l~~~~i~~l~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n  257 (321)
                      -+.++++++.++++|..+.  ++|++|++++|.+.+..|..++++++|+.|++++|.+.+..+..|..+++|+.|++++|
T Consensus        14 ~~~l~~~~n~l~~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N   91 (174)
T 2r9u_A           14 QTLVNCQNIRLASVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDN   91 (174)
T ss_dssp             SSEEECCSSCCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred             CcEEEeCCCCCCccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCC
Confidence            4678888898888887553  78899999999888877888889999999999998877665556788899999999999


Q ss_pred             CCcccchh-hhccCCcCEEeccCCC
Q 037308          258 NVERIPES-IIQLFVLRYLLLSYSE  281 (321)
Q Consensus       258 ~l~~l~~~-l~~l~~L~~L~l~~n~  281 (321)
                      +++.+|.. +..+++|++|++++|+
T Consensus        92 ~l~~l~~~~~~~l~~L~~L~L~~N~  116 (174)
T 2r9u_A           92 HLKSIPRGAFDNLKSLTHIYLYNNP  116 (174)
T ss_dssp             CCCCCCTTTTTTCTTCSEEECCSSC
T ss_pred             ccceeCHHHhccccCCCEEEeCCCC
Confidence            99988864 7888999999999983

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=99.26  E-value=1.3e-13  Score=112.87  Aligned_cols=105  Identities=18%  Similarity=0.124  Sum_probs=92.7

Q ss_pred             ccCCccEEEeccccccccChhhhccCCCCeEecccCcccccccccccCCCCCCEEEecCCCCCCccccccCCCCCCcEEE
Q 037308          174 SSGNINWLFLRETAIEELPSSIERLLRLGHLDLSDCKRLKSLPSSLFKLKSLGVLNLGGCSNLQRLPECLGQLSSPIILN  253 (321)
Q Consensus       174 ~~~~L~~L~l~~~~i~~l~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~  253 (321)
                      .+++|++|++++|.++++| .+..+++|++|++++|.+. .+|..+..+++|+.|++++|.+.+ +| .+..+++|+.|+
T Consensus        46 ~l~~L~~L~ls~n~l~~l~-~~~~l~~L~~L~l~~n~l~-~l~~~~~~~~~L~~L~L~~N~l~~-l~-~~~~l~~L~~L~  121 (198)
T 1ds9_A           46 TLKACKHLALSTNNIEKIS-SLSGMENLRILSLGRNLIK-KIENLDAVADTLEELWISYNQIAS-LS-GIEKLVNLRVLY  121 (198)
T ss_dssp             HTTTCSEEECSEEEESCCC-CHHHHTTCCEEEEEEEEEC-SCSSHHHHHHHCSEEEEEEEECCC-HH-HHHHHHHSSEEE
T ss_pred             cCCCCCEEECCCCCCcccc-ccccCCCCCEEECCCCCcc-cccchhhcCCcCCEEECcCCcCCc-CC-ccccCCCCCEEE
Confidence            4789999999999999998 7899999999999999866 567777788999999999987765 54 688899999999


Q ss_pred             cccCCCcccch--hhhccCCcCEEeccCCCC
Q 037308          254 LAKTNVERIPE--SIIQLFVLRYLLLSYSER  282 (321)
Q Consensus       254 l~~n~l~~l~~--~l~~l~~L~~L~l~~n~~  282 (321)
                      +++|.++.++.  .+..+++|++|++++|+.
T Consensus       122 l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l  152 (198)
T 1ds9_A          122 MSNNKITNWGEIDKLAALDKLEDLLLAGNPL  152 (198)
T ss_dssp             ESEEECCCHHHHHHHTTTTTCSEEEECSCHH
T ss_pred             CCCCcCCchhHHHHHhcCCCCCEEEecCCcc
Confidence            99999998775  788999999999999943

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}

Probab=99.25  E-value=4.3e-11  Score=105.67  Aligned_cols=235  Identities=12%  Similarity=0.043  Sum_probs=155.9

Q ss_pred             CCCceEEEEeecCCCCccccceeccCCCCcCcccEEEecCCCCCCCCCc-C-C--------cCceeEEeccCCccccccc
Q 037308           28 MPKLRFLKFYSSSFNGENKCKVSYLQDPRFAEVKYFHWHGYPLKSLPSN-L-S--------AEKLVFLKVPYSDIEQLWN   97 (321)
Q Consensus        28 l~~L~~L~l~~n~~~~~~~~~~~~~~~l~~~~L~~l~l~~~~l~~~~~~-~-~--------l~~L~~L~l~~~~l~~~~~   97 (321)
                      +++|++|||++|.+...     ... .-..+.++.+.+..+   .+|.. + +        +++|+.+++++ .++.+..
T Consensus        48 l~~L~~LdLs~n~i~~~-----~~~-~~~~~~~~~~~~~~~---~I~~~aF~~~~~~~~~g~~~L~~l~L~~-~i~~I~~  117 (329)
T 3sb4_A           48 FPSLKVLDISNAEIKMY-----SGK-AGTYPNGKFYIYMAN---FVPAYAFSNVVNGVTKGKQTLEKVILSE-KIKNIED  117 (329)
T ss_dssp             CTTCCEEEEEEEEECCE-----EES-SSSSGGGCCEEECTT---EECTTTTEEEETTEEEECTTCCC-CBCT-TCCEECT
T ss_pred             hccCeEEecCcceeEEe-----cCc-ccccccccccccccc---ccCHHHhcccccccccccCCCcEEECCc-cccchhH
Confidence            78999999999985410     000 011122344444443   23333 2 5        78888888877 7777654


Q ss_pred             -CCCCCCChHhHHhhccccccccCCCCCCCCCCCCccEEEccCCCC----CcccCccccCcccCc---------------
Q 037308           98 -GEKHYSNLNQIINATCNKLIAKTPNPTLMPHLNKLVILNLRGSKS----LKSLPSGIFNLEFLT---------------  157 (321)
Q Consensus        98 -~~~~l~~L~~~l~l~~~~l~~~~~~~~~~~~l~~L~~L~l~~n~~----~~~~p~~l~~l~~L~---------------  157 (321)
                       .+..+++|+. +++..|.+. .++. ..|.++.++..+.......    .......|..+..|+               
T Consensus       118 ~aF~~~~~L~~-l~l~~n~i~-~i~~-~aF~~~~~l~~l~~~~~~~~~~~~~i~~~~f~~~~~L~~~i~~~~~~~l~~~~  194 (329)
T 3sb4_A          118 AAFKGCDNLKI-CQIRKKTAP-NLLP-EALADSVTAIFIPLGSSDAYRFKNRWEHFAFIEGEPLETTIQVGAMGKLEDEI  194 (329)
T ss_dssp             TTTTTCTTCCE-EEBCCSSCC-EECT-TSSCTTTCEEEECTTCTHHHHTSTTTTTSCEEESCCCEEEEEECTTCCHHHHH
T ss_pred             HHhhcCcccce-EEcCCCCcc-ccch-hhhcCCCceEEecCcchhhhhccccccccccccccccceeEEecCCCcHHHHH
Confidence             4566777888 888777776 5442 3667777777666555211    011112233344444               


Q ss_pred             -----------EEecCCCCCccccccc--ccCCccEEEeccccccccChh-hhccCCCCeEecccCcccccccccccCCC
Q 037308          158 -----------KLDLSGCSKLKRLLEI--SSGNINWLFLRETAIEELPSS-IERLLRLGHLDLSDCKRLKSLPSSLFKLK  223 (321)
Q Consensus       158 -----------~L~l~~~~~~~~~~~~--~~~~L~~L~l~~~~i~~l~~~-~~~l~~L~~L~l~~n~~~~~~~~~~~~l~  223 (321)
                                 .+.+.+..........  .+++|+.+++.+|.++.++.. |.++.+|+.+++..| +....+..|.++.
T Consensus       195 ~~~~~~~~~~~~l~~~~~l~~~~~~~l~~~~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n-i~~I~~~aF~~~~  273 (329)
T 3sb4_A          195 MKAGLQPRDINFLTIEGKLDNADFKLIRDYMPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHN-LKTIGQRVFSNCG  273 (329)
T ss_dssp             HHTTCCGGGCSEEEEEECCCHHHHHHHHHHCTTCCEEECTTBCCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCT
T ss_pred             hhcccCccccceEEEeeeecHHHHHHHHHhcCCCeEEECCCCCcceecHhhhhCCCCCCEEECCcc-cceehHHHhhCCh
Confidence                       3333221110001000  278999999999999999864 889999999999986 6666667899999


Q ss_pred             CCC-EEEecCCCCCCccccccCCCCCCcEEEcccCCCcccch-hhhccCCcCEEec
Q 037308          224 SLG-VLNLGGCSNLQRLPECLGQLSSPIILNLAKTNVERIPE-SIIQLFVLRYLLL  277 (321)
Q Consensus       224 ~L~-~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~l~~-~l~~l~~L~~L~l  277 (321)
                      +|+ .+++.+ .+...-+.+|.++++|+.+++++|.++.++. .|.++++|++++.
T Consensus       274 ~L~~~l~l~~-~l~~I~~~aF~~c~~L~~l~l~~n~i~~I~~~aF~~~~~L~~ly~  328 (329)
T 3sb4_A          274 RLAGTLELPA-SVTAIEFGAFMGCDNLRYVLATGDKITTLGDELFGNGVPSKLIYK  328 (329)
T ss_dssp             TCCEEEEECT-TCCEECTTTTTTCTTEEEEEECSSCCCEECTTTTCTTCCCCEEEC
T ss_pred             hccEEEEEcc-cceEEchhhhhCCccCCEEEeCCCccCccchhhhcCCcchhhhcc
Confidence            999 999988 5555556799999999999999999998885 7888999999864

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}

Probab=99.22  E-value=2.8e-12  Score=115.17  Aligned_cols=157  Identities=18%  Similarity=0.096  Sum_probs=104.3

Q ss_pred             CCCccEEEccCCCCCcccCccc----c-CcccCcEEecCCCCCccccccc---ccCCccEEEeccccccccC-----hhh
Q 037308          129 LNKLVILNLRGSKSLKSLPSGI----F-NLEFLTKLDLSGCSKLKRLLEI---SSGNINWLFLRETAIEELP-----SSI  195 (321)
Q Consensus       129 l~~L~~L~l~~n~~~~~~p~~l----~-~l~~L~~L~l~~~~~~~~~~~~---~~~~L~~L~l~~~~i~~l~-----~~~  195 (321)
                      ++.|++|++++|.+.......+    . ..++|+.|++++|.........   .+.+|+.|++++|.+++..     ..+
T Consensus        71 ~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L  150 (372)
T 3un9_A           71 LSSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLL  150 (372)
T ss_dssp             HTTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHH
T ss_pred             HhhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHH
Confidence            3567888888887543222222    2 2368888888887643321111   2567888888888887532     222


Q ss_pred             -hccCCCCeEecccCccccc----ccccccCCCCCCEEEecCCCCCCc----cccccCCCCCCcEEEcccCCCcc-----
Q 037308          196 -ERLLRLGHLDLSDCKRLKS----LPSSLFKLKSLGVLNLGGCSNLQR----LPECLGQLSSPIILNLAKTNVER-----  261 (321)
Q Consensus       196 -~~l~~L~~L~l~~n~~~~~----~~~~~~~l~~L~~L~l~~~~~~~~----~~~~~~~~~~L~~L~l~~n~l~~-----  261 (321)
                       ...++|++|++++|.+.+.    ++..+..+++|++|++++|.+...    ++..+...++|+.|++++|.++.     
T Consensus       151 ~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~  230 (372)
T 3un9_A          151 LHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALA  230 (372)
T ss_dssp             HSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHH
T ss_pred             HhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHH
Confidence             2356788888888887542    334456788888899888876542    34566677788899998888873     


Q ss_pred             cchhhhccCCcCEEeccCCCCcccc
Q 037308          262 IPESIIQLFVLRYLLLSYSERIQSV  286 (321)
Q Consensus       262 l~~~l~~l~~L~~L~l~~n~~l~~~  286 (321)
                      ++..+..+++|++|++++| .+++.
T Consensus       231 l~~~L~~~~~L~~L~Ls~N-~i~~~  254 (372)
T 3un9_A          231 LARAAREHPSLELLHLYFN-ELSSE  254 (372)
T ss_dssp             HHHHHHHCSSCCEEECTTS-SCCHH
T ss_pred             HHHHHHhCCCCCEEeccCC-CCCHH
Confidence            4445566788889999888 56543

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=99.15  E-value=1.2e-10  Score=103.55  Aligned_cols=102  Identities=18%  Similarity=0.137  Sum_probs=65.5

Q ss_pred             EEecCCCCCccccccc-ccCCccEEEecc-ccccccC-hhhhccCCCCeEecccCcccccccccccCCCCCCEEEecCCC
Q 037308          158 KLDLSGCSKLKRLLEI-SSGNINWLFLRE-TAIEELP-SSIERLLRLGHLDLSDCKRLKSLPSSLFKLKSLGVLNLGGCS  234 (321)
Q Consensus       158 ~L~l~~~~~~~~~~~~-~~~~L~~L~l~~-~~i~~l~-~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~~~  234 (321)
                      .++++++..+..+|.. .+.+|+.|++++ |.++.++ ..+..+++|++|+|++|.+.+..|..|.++++|+.|+|++|.
T Consensus        12 ~v~~~~~n~l~~ip~l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~   91 (347)
T 2ifg_A           12 GLRCTRDGALDSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNA   91 (347)
T ss_dssp             CEECCSSCCCTTTTTSCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSSC
T ss_pred             EEEcCCCCCCCccCCCCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCCc
Confidence            3455554234445542 244577777774 7777766 346677777777777777766666667777777777777766


Q ss_pred             CCCccccccCCCCCCcEEEcccCCCc
Q 037308          235 NLQRLPECLGQLSSPIILNLAKTNVE  260 (321)
Q Consensus       235 ~~~~~~~~~~~~~~L~~L~l~~n~l~  260 (321)
                      +.+..+..+..++ |+.|++.+|.+.
T Consensus        92 l~~~~~~~~~~~~-L~~l~l~~N~~~  116 (347)
T 2ifg_A           92 LESLSWKTVQGLS-LQELVLSGNPLH  116 (347)
T ss_dssp             CSCCCSTTTCSCC-CCEEECCSSCCC
T ss_pred             cceeCHHHcccCC-ceEEEeeCCCcc
Confidence            6554444455444 777777777776

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}

Probab=99.00  E-value=9e-11  Score=105.34  Aligned_cols=133  Identities=17%  Similarity=0.038  Sum_probs=96.2

Q ss_pred             CCCccEEEccCCCCCcccC-ccccCcccCcEEecCCCCCccccccc-------ccCCccEEEeccccccc-----cChhh
Q 037308          129 LNKLVILNLRGSKSLKSLP-SGIFNLEFLTKLDLSGCSKLKRLLEI-------SSGNINWLFLRETAIEE-----LPSSI  195 (321)
Q Consensus       129 l~~L~~L~l~~n~~~~~~p-~~l~~l~~L~~L~l~~~~~~~~~~~~-------~~~~L~~L~l~~~~i~~-----l~~~~  195 (321)
                      ..+|++|++++|.+..... .....+++|+.|++++|.........       ..++|+.|++++|.++.     ++..+
T Consensus       100 ~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L  179 (372)
T 3un9_A          100 RHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLLLHDQCQITTLRLSNNPLTAAGVAVLMEGL  179 (372)
T ss_dssp             SSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHHHSTTCCCCEEECCSSCCHHHHHHHHHHHH
T ss_pred             CCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHHHhcCCccceeeCCCCCCChHHHHHHHHHH
Confidence            3678889999887543322 22334678889999987643321111       24689999999998875     44456


Q ss_pred             hccCCCCeEecccCccccc----ccccccCCCCCCEEEecCCCCCCc----cccccCCCCCCcEEEcccCCCcc
Q 037308          196 ERLLRLGHLDLSDCKRLKS----LPSSLFKLKSLGVLNLGGCSNLQR----LPECLGQLSSPIILNLAKTNVER  261 (321)
Q Consensus       196 ~~l~~L~~L~l~~n~~~~~----~~~~~~~l~~L~~L~l~~~~~~~~----~~~~~~~~~~L~~L~l~~n~l~~  261 (321)
                      ..+++|++|++++|.+.+.    ++..+...++|+.|++++|.+...    ++..+...++|+.|++++|.++.
T Consensus       180 ~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~l~~~L~~~~~L~~L~Ls~N~i~~  253 (372)
T 3un9_A          180 AGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALALARAAREHPSLELLHLYFNELSS  253 (372)
T ss_dssp             HTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHHHHHHHHHCSSCCEEECTTSSCCH
T ss_pred             hcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHHHHHHHHhCCCCCEEeccCCCCCH
Confidence            7788999999999997653    345567788999999999988653    34455567899999999999983

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=98.95  E-value=5e-09  Score=92.91  Aligned_cols=102  Identities=22%  Similarity=0.122  Sum_probs=68.7

Q ss_pred             EEEccCC-CCCcccCccccCcccCcEEecCCCCCccccccc---ccCCccEEEeccccccccCh-hhhccCCCCeEeccc
Q 037308          134 ILNLRGS-KSLKSLPSGIFNLEFLTKLDLSGCSKLKRLLEI---SSGNINWLFLRETAIEELPS-SIERLLRLGHLDLSD  208 (321)
Q Consensus       134 ~L~l~~n-~~~~~~p~~l~~l~~L~~L~l~~~~~~~~~~~~---~~~~L~~L~l~~~~i~~l~~-~~~~l~~L~~L~l~~  208 (321)
                      .++.+++ . +..+|. +..+++|+.|+|++++.++.++..   .+++|+.|++++|.+++++. .+..+++|++|+|++
T Consensus        12 ~v~~~~~n~-l~~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~   89 (347)
T 2ifg_A           12 GLRCTRDGA-LDSLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSF   89 (347)
T ss_dssp             CEECCSSCC-CTTTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCS
T ss_pred             EEEcCCCCC-CCccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCC
Confidence            3455554 3 445666 666666666666642233333321   35667777777777887664 578899999999999


Q ss_pred             CcccccccccccCCCCCCEEEecCCCCCCc
Q 037308          209 CKRLKSLPSSLFKLKSLGVLNLGGCSNLQR  238 (321)
Q Consensus       209 n~~~~~~~~~~~~l~~L~~L~l~~~~~~~~  238 (321)
                      |.+.+..+..+..+. |+.|++.+|++...
T Consensus        90 N~l~~~~~~~~~~~~-L~~l~l~~N~~~c~  118 (347)
T 2ifg_A           90 NALESLSWKTVQGLS-LQELVLSGNPLHCS  118 (347)
T ss_dssp             SCCSCCCSTTTCSCC-CCEEECCSSCCCCC
T ss_pred             CccceeCHHHcccCC-ceEEEeeCCCccCC
Confidence            998766555565555 99999999887754

>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}

Probab=98.82  E-value=7.2e-08  Score=87.08  Aligned_cols=209  Identities=11%  Similarity=0.040  Sum_probs=111.6

Q ss_pred             CcccEEEecCCCCCCCCCc-C-CcCceeEEeccCCcccccc-cCCCCCCChHhHHhhccccccccCCCCCCCCCCCCccE
Q 037308           58 AEVKYFHWHGYPLKSLPSN-L-SAEKLVFLKVPYSDIEQLW-NGEKHYSNLNQIINATCNKLIAKTPNPTLMPHLNKLVI  134 (321)
Q Consensus        58 ~~L~~l~l~~~~l~~~~~~-~-~l~~L~~L~l~~~~l~~~~-~~~~~l~~L~~~l~l~~~~l~~~~~~~~~~~~l~~L~~  134 (321)
                      .+|+.+.+..+. ..++.. + ++.+|+.+.+..+ ++.+. ..+.....|+. +.+..+...  +..  .......|+.
T Consensus       162 ~~L~~i~l~~~~-~~I~~~~F~~c~~L~~i~l~~~-~~~I~~~~F~~~~~L~~-i~~~~~~~~--i~~--~~~~~~~l~~  234 (394)
T 4fs7_A          162 ESLEYVSLPDSM-ETLHNGLFSGCGKLKSIKLPRN-LKIIRDYCFAECILLEN-MEFPNSLYY--LGD--FALSKTGVKN  234 (394)
T ss_dssp             TTCCEEECCTTC-CEECTTTTTTCTTCCBCCCCTT-CCEECTTTTTTCTTCCB-CCCCTTCCE--ECT--TTTTTCCCCE
T ss_pred             CCCcEEecCCcc-ceeccccccCCCCceEEEcCCC-ceEeCchhhccccccce-eecCCCceE--eeh--hhcccCCCce
Confidence            777777776432 333333 3 6777777777654 33333 23344555555 444332221  121  3334456777


Q ss_pred             EEccCCCCCcccCccccCcccCcEEecCCCCC-cccccccccCCccEEEeccccccccChhhhccCCCCeEecccCcccc
Q 037308          135 LNLRGSKSLKSLPSGIFNLEFLTKLDLSGCSK-LKRLLEISSGNINWLFLRETAIEELPSSIERLLRLGHLDLSDCKRLK  213 (321)
Q Consensus       135 L~l~~n~~~~~~p~~l~~l~~L~~L~l~~~~~-~~~~~~~~~~~L~~L~l~~~~i~~l~~~~~~l~~L~~L~l~~n~~~~  213 (321)
                      +.+.... ...-...+..+..++.+.+..+.. +.......+..++........+.+  ..+..+.+|+.+.+.. .+..
T Consensus       235 i~ip~~~-~~i~~~~f~~~~~l~~~~~~~~~~~i~~~~F~~~~~l~~~~~~~~~i~~--~~F~~~~~L~~i~l~~-~i~~  310 (394)
T 4fs7_A          235 IIIPDSF-TELGKSVFYGCTDLESISIQNNKLRIGGSLFYNCSGLKKVIYGSVIVPE--KTFYGCSSLTEVKLLD-SVKF  310 (394)
T ss_dssp             EEECTTC-CEECSSTTTTCSSCCEEEECCTTCEECSCTTTTCTTCCEEEECSSEECT--TTTTTCTTCCEEEECT-TCCE
T ss_pred             EEECCCc-eecccccccccccceeEEcCCCcceeeccccccccccceeccCceeecc--cccccccccccccccc-ccce
Confidence            7776532 222223456677777777665321 111111134555555554432221  2355666777777754 3344


Q ss_pred             cccccccCCCCCCEEEecCCCCCCccccccCCCCCCcEEEcccCCCcccc-hhhhccCCcCEEeccC
Q 037308          214 SLPSSLFKLKSLGVLNLGGCSNLQRLPECLGQLSSPIILNLAKTNVERIP-ESIIQLFVLRYLLLSY  279 (321)
Q Consensus       214 ~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~l~-~~l~~l~~L~~L~l~~  279 (321)
                      .....|.++.+|+.+++.. .+...-..+|.++++|+.+++..+ ++.+. .++..|++|+++++..
T Consensus       311 I~~~aF~~c~~L~~i~lp~-~v~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~lp~  375 (394)
T 4fs7_A          311 IGEEAFESCTSLVSIDLPY-LVEEIGKRSFRGCTSLSNINFPLS-LRKIGANAFQGCINLKKVELPK  375 (394)
T ss_dssp             ECTTTTTTCTTCCEECCCT-TCCEECTTTTTTCTTCCEECCCTT-CCEECTTTBTTCTTCCEEEEEG
T ss_pred             echhhhcCCCCCCEEEeCC-cccEEhHHhccCCCCCCEEEECcc-ccEehHHHhhCCCCCCEEEECC
Confidence            4445566777777777754 233223356777777777777655 66665 3566677777776643

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}

Probab=98.81  E-value=5.5e-09  Score=93.14  Aligned_cols=156  Identities=12%  Similarity=0.129  Sum_probs=98.5

Q ss_pred             CCCCccEEEccCCCC---------CcccCccccCcccCcEEecCCCCCcccccccccCCccEEEeccccccccC-hhh--
Q 037308          128 HLNKLVILNLRGSKS---------LKSLPSGIFNLEFLTKLDLSGCSKLKRLLEISSGNINWLFLRETAIEELP-SSI--  195 (321)
Q Consensus       128 ~l~~L~~L~l~~n~~---------~~~~p~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~i~~l~-~~~--  195 (321)
                      .+++|+.|.+.....         .+.++..+..+++|+.|.+++|.... ++....++|+.|++..+.+..-. ..+  
T Consensus       137 ~l~~L~~L~l~~~~~e~~~is~~~~~~L~~ll~~~P~L~~L~L~g~~~l~-l~~~~~~~L~~L~L~~~~l~~~~l~~l~~  215 (362)
T 2ra8_A          137 KFAHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTNNLS-IGKKPRPNLKSLEIISGGLPDSVVEDILG  215 (362)
T ss_dssp             HHTTCSEEEECCCCTTTCCGGGCBCCBCHHHHHTCTTCCEEEEECCBTCB-CCSCBCTTCSEEEEECSBCCHHHHHHHHH
T ss_pred             hcchhhheeecCcchhhcccccccccCHHHHHhcCCCCcEEEEeCCCCce-eccccCCCCcEEEEecCCCChHHHHHHHH
Confidence            455677776654321         01233344567888888887763222 23234678999998887765411 223  


Q ss_pred             hccCCCCeEeccc--Cccccc-----ccccc--cCCCCCCEEEecCCCCCCcccccc---CCCCCCcEEEcccCCCcc--
Q 037308          196 ERLLRLGHLDLSD--CKRLKS-----LPSSL--FKLKSLGVLNLGGCSNLQRLPECL---GQLSSPIILNLAKTNVER--  261 (321)
Q Consensus       196 ~~l~~L~~L~l~~--n~~~~~-----~~~~~--~~l~~L~~L~l~~~~~~~~~~~~~---~~~~~L~~L~l~~n~l~~--  261 (321)
                      ..+++|++|+++.  +...+.     +...+  ..+++|+.|++.+|.+....+..+   ..+++|+.|+++.|.++.  
T Consensus       216 ~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~l~~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G  295 (362)
T 2ra8_A          216 SDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEG  295 (362)
T ss_dssp             SBCTTCCEEEEECBCGGGTCCSCGGGTGGGSCTTTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHH
T ss_pred             ccCCCCcEEEEeccccccccchhHHHHHHHHhcCCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCChHH
Confidence            2678999998853  221111     11222  357899999999887764333222   357889999999999873  


Q ss_pred             ---cchhhhccCCcCEEeccCCCCccc
Q 037308          262 ---IPESIIQLFVLRYLLLSYSERIQS  285 (321)
Q Consensus       262 ---l~~~l~~l~~L~~L~l~~n~~l~~  285 (321)
                         ++..+..+++|++|+++.| .+++
T Consensus       296 ~~~L~~~L~~l~~L~~L~L~~n-~i~d  321 (362)
T 2ra8_A          296 ARLLLDHVDKIKHLKFINMKYN-YLSD  321 (362)
T ss_dssp             HHHHHTTHHHHTTCSEEECCSB-BCCH
T ss_pred             HHHHHhhcccCCcceEEECCCC-cCCH
Confidence               4445567899999999988 5654

>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}

Probab=98.81  E-value=1.6e-07  Score=84.82  Aligned_cols=60  Identities=18%  Similarity=0.113  Sum_probs=42.7

Q ss_pred             cccCCCCCCEEEecCCCCCCccccccCCCCCCcEEEcccCCCcccc-hhhhccCCcCEEeccC
Q 037308          218 SLFKLKSLGVLNLGGCSNLQRLPECLGQLSSPIILNLAKTNVERIP-ESIIQLFVLRYLLLSY  279 (321)
Q Consensus       218 ~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~l~-~~l~~l~~L~~L~l~~  279 (321)
                      .+..+.+|+.+.+..+ +...-..+|.++++|+.+++..+ ++.+. .++.+|.+|+++.+..
T Consensus       292 ~F~~~~~L~~i~l~~~-i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~c~~L~~i~lp~  352 (394)
T 4fs7_A          292 TFYGCSSLTEVKLLDS-VKFIGEEAFESCTSLVSIDLPYL-VEEIGKRSFRGCTSLSNINFPL  352 (394)
T ss_dssp             TTTTCTTCCEEEECTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCEECCCT
T ss_pred             cccccccccccccccc-cceechhhhcCCCCCCEEEeCCc-ccEEhHHhccCCCCCCEEEECc
Confidence            4567778888888653 33333457888899999998654 77776 4677888888888754

>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}

Probab=98.64  E-value=6.3e-06  Score=73.74  Aligned_cols=100  Identities=9%  Similarity=0.012  Sum_probs=47.1

Q ss_pred             cCCccEEEeccccccccCh-hhhccCCCCeEecccCcccccccccccCCCCCCEEEecCCCCCCccccccCCCCCCcEEE
Q 037308          175 SGNINWLFLRETAIEELPS-SIERLLRLGHLDLSDCKRLKSLPSSLFKLKSLGVLNLGGCSNLQRLPECLGQLSSPIILN  253 (321)
Q Consensus       175 ~~~L~~L~l~~~~i~~l~~-~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~  253 (321)
                      +..|+.+.+..+ ++.+.. .+.++..|+.+.+.. .+.......+.++.+|+.+.+.++.+...-..+|.++.+|+.+.
T Consensus       239 ~~~L~~i~lp~~-v~~I~~~aF~~~~~l~~i~l~~-~i~~i~~~aF~~c~~L~~i~l~~~~i~~I~~~aF~~c~~L~~i~  316 (379)
T 4h09_A          239 MKALDEIAIPKN-VTSIGSFLLQNCTALKTLNFYA-KVKTVPYLLCSGCSNLTKVVMDNSAIETLEPRVFMDCVKLSSVT  316 (379)
T ss_dssp             CSSCCEEEECTT-CCEECTTTTTTCTTCCEEEECC-CCSEECTTTTTTCTTCCEEEECCTTCCEECTTTTTTCTTCCEEE
T ss_pred             CccceEEEcCCC-ccEeCccccceeehhccccccc-cceeccccccccccccccccccccccceehhhhhcCCCCCCEEE
Confidence            344555554432 333332 244455555555543 22333333455556666666554433333334555556666666


Q ss_pred             cccCCCcccc-hhhhccCCcCEEec
Q 037308          254 LAKTNVERIP-ESIIQLFVLRYLLL  277 (321)
Q Consensus       254 l~~n~l~~l~-~~l~~l~~L~~L~l  277 (321)
                      +..+ ++.+. .++.+|++|+++.+
T Consensus       317 lp~~-l~~I~~~aF~~C~~L~~i~i  340 (379)
T 4h09_A          317 LPTA-LKTIQVYAFKNCKALSTISY  340 (379)
T ss_dssp             CCTT-CCEECTTTTTTCTTCCCCCC
T ss_pred             cCcc-ccEEHHHHhhCCCCCCEEEE
Confidence            5433 44444 24455555555544

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1

Probab=98.59  E-value=4.1e-08  Score=79.04  Aligned_cols=91  Identities=14%  Similarity=0.096  Sum_probs=57.4

Q ss_pred             hhhhccCCCCeEecccCccccc----ccccccCCCCCCEEEecCCCCCCc----cccccCCCCCCcEEEc--ccCCCcc-
Q 037308          193 SSIERLLRLGHLDLSDCKRLKS----LPSSLFKLKSLGVLNLGGCSNLQR----LPECLGQLSSPIILNL--AKTNVER-  261 (321)
Q Consensus       193 ~~~~~l~~L~~L~l~~n~~~~~----~~~~~~~l~~L~~L~l~~~~~~~~----~~~~~~~~~~L~~L~l--~~n~l~~-  261 (321)
                      ..+...++|++|++++|.+.+.    +...+...++|++|++++|.+...    +...+...++|+.|++  ++|.+.. 
T Consensus        59 ~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~~~N~i~~~  138 (185)
T 1io0_A           59 EALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILALVEALQSNTSLIELRIDNQSQPLGNN  138 (185)
T ss_dssp             HHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHHHHHGGGGCSSCCEEECCCCSSCCCHH
T ss_pred             HHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHHHHHHHHHHhCCCceEEEecCCCCCCCHH
Confidence            3445556677777777765542    223344556777777777666543    3455666677888888  6777762 


Q ss_pred             ----cchhhhccCCcCEEeccCCCCcc
Q 037308          262 ----IPESIIQLFVLRYLLLSYSERIQ  284 (321)
Q Consensus       262 ----l~~~l~~l~~L~~L~l~~n~~l~  284 (321)
                          +...+...++|++|++++| .+.
T Consensus       139 g~~~l~~~L~~n~~L~~L~L~~n-~i~  164 (185)
T 1io0_A          139 VEMEIANMLEKNTTLLKFGYHFT-QQG  164 (185)
T ss_dssp             HHHHHHHHHHHCSSCCEEECCCS-SHH
T ss_pred             HHHHHHHHHHhCCCcCEEeccCC-CCC
Confidence                4445566678888888877 444

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}

Probab=98.58  E-value=3.4e-08  Score=88.01  Aligned_cols=150  Identities=14%  Similarity=0.163  Sum_probs=89.8

Q ss_pred             CCCCCccEEEccCCCCCcccCccccCcccCcEEecCCCCCcccc----cccccCCccEEEecc--cc------ccccChh
Q 037308          127 PHLNKLVILNLRGSKSLKSLPSGIFNLEFLTKLDLSGCSKLKRL----LEISSGNINWLFLRE--TA------IEELPSS  194 (321)
Q Consensus       127 ~~l~~L~~L~l~~n~~~~~~p~~l~~l~~L~~L~l~~~~~~~~~----~~~~~~~L~~L~l~~--~~------i~~l~~~  194 (321)
                      ..+++|+.|.+++|.. ..+++ + .+++|+.|++..|......    ....+++|+.|+++.  +.      +..+...
T Consensus       169 ~~~P~L~~L~L~g~~~-l~l~~-~-~~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~  245 (362)
T 2ra8_A          169 DAMPLLNNLKIKGTNN-LSIGK-K-PRPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPL  245 (362)
T ss_dssp             HTCTTCCEEEEECCBT-CBCCS-C-BCTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGGTGGG
T ss_pred             hcCCCCcEEEEeCCCC-ceecc-c-cCCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEeccccccccchhHHHHHHH
Confidence            3456777777776631 12333 3 3677777777765432211    111367777777742  11      1122222


Q ss_pred             h--hccCCCCeEecccCcccccccccc---cCCCCCCEEEecCCCCCCc----cccccCCCCCCcEEEcccCCCc-ccch
Q 037308          195 I--ERLLRLGHLDLSDCKRLKSLPSSL---FKLKSLGVLNLGGCSNLQR----LPECLGQLSSPIILNLAKTNVE-RIPE  264 (321)
Q Consensus       195 ~--~~l~~L~~L~l~~n~~~~~~~~~~---~~l~~L~~L~l~~~~~~~~----~~~~~~~~~~L~~L~l~~n~l~-~l~~  264 (321)
                      +  ..+++|++|++.+|.+.+..+..+   ..+++|+.|+++.|.+...    ++..+..+++|+.|+++.|.++ ....
T Consensus       246 l~~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~d~~~~  325 (362)
T 2ra8_A          246 FSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLSDEMKK  325 (362)
T ss_dssp             SCTTTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBCCHHHHH
T ss_pred             HhcCCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcCCHHHHH
Confidence            2  346899999999888765433322   3578999999998876653    3334455789999999999887 3333


Q ss_pred             hhhc-cCCcCEEeccCCC
Q 037308          265 SIIQ-LFVLRYLLLSYSE  281 (321)
Q Consensus       265 ~l~~-l~~L~~L~l~~n~  281 (321)
                      .+.. +  ..+++++.++
T Consensus       326 ~l~~al--g~~~~~~~~~  341 (362)
T 2ra8_A          326 ELQKSL--PMKIDVSDSQ  341 (362)
T ss_dssp             HHHHHC--CSEEECCSBC
T ss_pred             HHHHHc--CCEEEecCCc
Confidence            3433 2  3567777774

>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}

Probab=98.53  E-value=7.1e-06  Score=73.91  Aligned_cols=102  Identities=13%  Similarity=0.110  Sum_probs=68.8

Q ss_pred             cCCccEEEeccccccccC-hhhhccCCCCeEecccCcccccccccccCCCCCCEEEecCCCCCCccccccCCCCCCcEEE
Q 037308          175 SGNINWLFLRETAIEELP-SSIERLLRLGHLDLSDCKRLKSLPSSLFKLKSLGVLNLGGCSNLQRLPECLGQLSSPIILN  253 (321)
Q Consensus       175 ~~~L~~L~l~~~~i~~l~-~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~  253 (321)
                      +..|+.+.+..+. ..+. ..+.+++.|+.+.+.. .+.......|.++.+|+.+.+..+ +......+|.++.+|+.+.
T Consensus       264 c~~L~~i~lp~~~-~~I~~~aF~~c~~L~~i~l~~-~i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~C~~L~~i~  340 (394)
T 4gt6_A          264 CAYLASVKMPDSV-VSIGTGAFMNCPALQDIEFSS-RITELPESVFAGCISLKSIDIPEG-ITQILDDAFAGCEQLERIA  340 (394)
T ss_dssp             CSSCCEEECCTTC-CEECTTTTTTCTTCCEEECCT-TCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEE
T ss_pred             cccccEEeccccc-ceecCcccccccccccccCCC-cccccCceeecCCCCcCEEEeCCc-ccEehHhHhhCCCCCCEEE
Confidence            4566666665432 3343 3466777888888763 445444556778888888888753 3333345788888888888


Q ss_pred             cccCCCcccc-hhhhccCCcCEEeccCC
Q 037308          254 LAKTNVERIP-ESIIQLFVLRYLLLSYS  280 (321)
Q Consensus       254 l~~n~l~~l~-~~l~~l~~L~~L~l~~n  280 (321)
                      +..+ ++.+. .+|.+|++|+++++.++
T Consensus       341 ip~s-v~~I~~~aF~~C~~L~~i~~~~~  367 (394)
T 4gt6_A          341 IPSS-VTKIPESAFSNCTALNNIEYSGS  367 (394)
T ss_dssp             ECTT-CCBCCGGGGTTCTTCCEEEESSC
T ss_pred             ECcc-cCEEhHhHhhCCCCCCEEEECCc
Confidence            8654 77776 46788888888888765

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A

Probab=98.48  E-value=7.7e-08  Score=76.11  Aligned_cols=87  Identities=18%  Similarity=0.211  Sum_probs=57.7

Q ss_pred             CCCCeEecccCcccccccccccCCCCCCEEEecCCCCCC-ccccccCCC----CCCcEEEcccCC-Ccc-cchhhhccCC
Q 037308          199 LRLGHLDLSDCKRLKSLPSSLFKLKSLGVLNLGGCSNLQ-RLPECLGQL----SSPIILNLAKTN-VER-IPESIIQLFV  271 (321)
Q Consensus       199 ~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~~~~~~-~~~~~~~~~----~~L~~L~l~~n~-l~~-l~~~l~~l~~  271 (321)
                      ..|+.||+++|.+++..-..+.++++|+.|++++|..++ ..-..+..+    ++|+.|++++|. +++ --..+..+++
T Consensus        61 ~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~  140 (176)
T 3e4g_A           61 YKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRN  140 (176)
T ss_dssp             CCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTT
T ss_pred             ceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCC
Confidence            357777777777665555556777888888888875433 222334443    368888888874 772 2245667888


Q ss_pred             cCEEeccCCCCccc
Q 037308          272 LRYLLLSYSERIQS  285 (321)
Q Consensus       272 L~~L~l~~n~~l~~  285 (321)
                      |++|++++|+.+++
T Consensus       141 L~~L~L~~c~~Itd  154 (176)
T 3e4g_A          141 LKYLFLSDLPGVKE  154 (176)
T ss_dssp             CCEEEEESCTTCCC
T ss_pred             CCEEECCCCCCCCc
Confidence            88888888877776

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1

Probab=98.38  E-value=2.1e-07  Score=74.90  Aligned_cols=85  Identities=14%  Similarity=0.034  Sum_probs=59.3

Q ss_pred             CCccEEEeccccccc-----cChhhhccCCCCeEecccCccccc----ccccccCCCCCCEEEe--cCCCCCCc----cc
Q 037308          176 GNINWLFLRETAIEE-----LPSSIERLLRLGHLDLSDCKRLKS----LPSSLFKLKSLGVLNL--GGCSNLQR----LP  240 (321)
Q Consensus       176 ~~L~~L~l~~~~i~~-----l~~~~~~l~~L~~L~l~~n~~~~~----~~~~~~~l~~L~~L~l--~~~~~~~~----~~  240 (321)
                      ++|++|++++|.+.+     +...+...+.|++|++++|.+.+.    +...+...++|+.|++  ++|.+...    +.
T Consensus        65 ~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~  144 (185)
T 1io0_A           65 TYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIA  144 (185)
T ss_dssp             CSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHH
T ss_pred             CCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHHHHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHH
Confidence            455666666666553     344566667888888888887653    3455677788999999  77776543    33


Q ss_pred             cccCCCCCCcEEEcccCCCc
Q 037308          241 ECLGQLSSPIILNLAKTNVE  260 (321)
Q Consensus       241 ~~~~~~~~L~~L~l~~n~l~  260 (321)
                      +.+...++|+.|++++|.+.
T Consensus       145 ~~L~~n~~L~~L~L~~n~i~  164 (185)
T 1io0_A          145 NMLEKNTTLLKFGYHFTQQG  164 (185)
T ss_dssp             HHHHHCSSCCEEECCCSSHH
T ss_pred             HHHHhCCCcCEEeccCCCCC
Confidence            45556688999999999876

>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}

Probab=98.27  E-value=5.2e-05  Score=68.19  Aligned_cols=127  Identities=10%  Similarity=0.103  Sum_probs=82.5

Q ss_pred             cccCcccCcEEecCCCCC-cccccccccCCccEEEeccccccccCh-hhhccCCCCeEecccCcccccccccccCCCCCC
Q 037308          149 GIFNLEFLTKLDLSGCSK-LKRLLEISSGNINWLFLRETAIEELPS-SIERLLRLGHLDLSDCKRLKSLPSSLFKLKSLG  226 (321)
Q Consensus       149 ~l~~l~~L~~L~l~~~~~-~~~~~~~~~~~L~~L~l~~~~i~~l~~-~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~  226 (321)
                      .|..+..|+.+.+..... ++......+.+|+.+.+. +.++.++. .|.++.+|+.+.+.. .+.......|.++.+|+
T Consensus       260 aF~~c~~L~~i~lp~~~~~I~~~aF~~c~~L~~i~l~-~~i~~I~~~aF~~c~~L~~i~lp~-~v~~I~~~aF~~C~~L~  337 (394)
T 4gt6_A          260 AFDSCAYLASVKMPDSVVSIGTGAFMNCPALQDIEFS-SRITELPESVFAGCISLKSIDIPE-GITQILDDAFAGCEQLE  337 (394)
T ss_dssp             TTTTCSSCCEEECCTTCCEECTTTTTTCTTCCEEECC-TTCCEECTTTTTTCTTCCEEECCT-TCCEECTTTTTTCTTCC
T ss_pred             eeeecccccEEecccccceecCcccccccccccccCC-CcccccCceeecCCCCcCEEEeCC-cccEehHhHhhCCCCCC
Confidence            466778888888865321 111111246788888886 45677775 478889999999976 45555556788999999


Q ss_pred             EEEecCCCCCCccccccCCCCCCcEEEcccCCCcccchhhhccCCcCEEeccCC
Q 037308          227 VLNLGGCSNLQRLPECLGQLSSPIILNLAKTNVERIPESIIQLFVLRYLLLSYS  280 (321)
Q Consensus       227 ~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~l~~~l~~l~~L~~L~l~~n  280 (321)
                      .+.+.. .....-..+|.++++|+.+++.++... + ..+..+.+|+.+.+..+
T Consensus       338 ~i~ip~-sv~~I~~~aF~~C~~L~~i~~~~~~~~-~-~~~~~~~~L~~i~i~~~  388 (394)
T 4gt6_A          338 RIAIPS-SVTKIPESAFSNCTALNNIEYSGSRSQ-W-NAISTDSGLQNLPVAPG  388 (394)
T ss_dssp             EEEECT-TCCBCCGGGGTTCTTCCEEEESSCHHH-H-HTCBCCCCC--------
T ss_pred             EEEECc-ccCEEhHhHhhCCCCCCEEEECCceee-h-hhhhccCCCCEEEeCCC
Confidence            999976 344444468999999999999887432 1 23455666776666544

>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}

Probab=98.25  E-value=0.00012  Score=65.33  Aligned_cols=274  Identities=9%  Similarity=0.036  Sum_probs=152.7

Q ss_pred             CceEEEEeecCchhhhccChhhhcCCCCceEEEEeecCCCCccccceeccCCCCcCcccEEEecCCCCCCCCCc-CCcCc
Q 037308            3 KKIEGICLDMSTVKEIRLNLSTFTKMPKLRFLKFYSSSFNGENKCKVSYLQDPRFAEVKYFHWHGYPLKSLPSN-LSAEK   81 (321)
Q Consensus         3 ~~~~~~~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~l~~~~L~~l~l~~~~l~~~~~~-~~l~~   81 (321)
                      .+++.+.+. ++  ...+...+|.++.+|+.+++..+- +      ......+...+|+.+.+..+ +..++.. +...+
T Consensus        46 ~~i~~v~ip-~~--vt~Ig~~aF~~C~~L~~I~lp~~v-~------~Ig~~aF~~c~l~~i~~~~~-l~~I~~~aF~~~~  114 (379)
T 4h09_A           46 DRISEVRVN-SG--ITSIGEANFNSCYNMTKVTVASTV-T------SIGDGAFADTKLQSYTGMER-VKKFGDYVFQGTD  114 (379)
T ss_dssp             GGCSEEEEC-TT--EEEECTTTTTTCTTCCEEEECTTC-C------EECTTTTTTCCCCEEEECTT-CCEECTTTTTTCC
T ss_pred             cCCEEEEeC-CC--ccChHHHHhhCCCCCCEEEeCCcc-e------EechhhhcCCCCceEECCce-eeEeccceeccCC
Confidence            355666653 11  235566789999999999996541 1      11122333356777766532 4444443 34457


Q ss_pred             eeEEeccCCcccccccCCCCCCChHhHHhhccccccccCCCCCCCCCCCCccEEEccCCCCCcc------------cCcc
Q 037308           82 LVFLKVPYSDIEQLWNGEKHYSNLNQIINATCNKLIAKTPNPTLMPHLNKLVILNLRGSKSLKS------------LPSG  149 (321)
Q Consensus        82 L~~L~l~~~~l~~~~~~~~~l~~L~~~l~l~~~~l~~~~~~~~~~~~l~~L~~L~l~~n~~~~~------------~p~~  149 (321)
                      |+.+.+.++ +..+....+....+.. +.+. ..++ .+. ...+..+..++...+..+.....            ....
T Consensus       115 L~~i~lp~~-~~~i~~~~F~~~~l~~-~~~~-~~v~-~i~-~~~f~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  189 (379)
T 4h09_A          115 LDDFEFPGA-TTEIGNYIFYNSSVKR-IVIP-KSVT-TIK-DGIGYKAENLEKIEVSSNNKNYVAENYVLYNKNKTILES  189 (379)
T ss_dssp             CSEEECCTT-CCEECTTTTTTCCCCE-EEEC-TTCC-EEC-SCTTTTCTTCCEEEECTTCSSEEEETTEEEETTSSEEEE
T ss_pred             cccccCCCc-cccccccccccceeee-eecc-ceee-ccc-cchhcccccccccccccccceeecccceecccccceecc
Confidence            888888654 3333333333334443 2221 1122 221 11566777777777665431110            1111


Q ss_pred             ccCcccCcEEecCCCCC-cccccccccCCccEEEeccccccccC-hhhhccCCCCeEecccCcccccccccccCCCCCCE
Q 037308          150 IFNLEFLTKLDLSGCSK-LKRLLEISSGNINWLFLRETAIEELP-SSIERLLRLGHLDLSDCKRLKSLPSSLFKLKSLGV  227 (321)
Q Consensus       150 l~~l~~L~~L~l~~~~~-~~~~~~~~~~~L~~L~l~~~~i~~l~-~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~  227 (321)
                      +.....+..+.+..... ..........+|+.+.+..+ +..+. ..+..+..|+.+.+..+ +.......+.++.+|+.
T Consensus       190 ~~~~~~~~~~~~~~~~~~i~~~~f~~~~~l~~i~~~~~-~~~i~~~~f~~~~~L~~i~lp~~-v~~I~~~aF~~~~~l~~  267 (379)
T 4h09_A          190 YPAAKTGTEFTIPSTVKTVTAYGFSYGKNLKKITITSG-VTTLGDGAFYGMKALDEIAIPKN-VTSIGSFLLQNCTALKT  267 (379)
T ss_dssp             CCTTCCCSEEECCTTCCEECTTTTTTCSSCSEEECCTT-CCEECTTTTTTCSSCCEEEECTT-CCEECTTTTTTCTTCCE
T ss_pred             ccccccccccccccceeEEeecccccccccceeeeccc-eeEEccccccCCccceEEEcCCC-ccEeCccccceeehhcc
Confidence            23344455554443211 11111113556777666543 44444 34667778888888653 44444556778888888


Q ss_pred             EEecCCCCCCccccccCCCCCCcEEEcccCCCcccc-hhhhccCCcCEEecc------------CCCCcccccCcccccc
Q 037308          228 LNLGGCSNLQRLPECLGQLSSPIILNLAKTNVERIP-ESIIQLFVLRYLLLS------------YSERIQSVSLPLARGI  294 (321)
Q Consensus       228 L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~l~-~~l~~l~~L~~L~l~------------~n~~l~~~~~~~~l~~  294 (321)
                      +.+.. .+......+|.++++|+.+.+.++.++.++ ..+.+|.+|+++.+.            +|..|+++.+|.+++.
T Consensus       268 i~l~~-~i~~i~~~aF~~c~~L~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp~~l~~I~~~aF~~C~~L~~i~ip~~v~~  346 (379)
T 4h09_A          268 LNFYA-KVKTVPYLLCSGCSNLTKVVMDNSAIETLEPRVFMDCVKLSSVTLPTALKTIQVYAFKNCKALSTISYPKSITL  346 (379)
T ss_dssp             EEECC-CCSEECTTTTTTCTTCCEEEECCTTCCEECTTTTTTCTTCCEEECCTTCCEECTTTTTTCTTCCCCCCCTTCCE
T ss_pred             ccccc-cceeccccccccccccccccccccccceehhhhhcCCCCCCEEEcCccccEEHHHHhhCCCCCCEEEECCccCE
Confidence            88865 333333356778888888888888888776 467778888888774            3555666656666655


Q ss_pred             c
Q 037308          295 L  295 (321)
Q Consensus       295 l  295 (321)
                      +
T Consensus       347 I  347 (379)
T 4h09_A          347 I  347 (379)
T ss_dssp             E
T ss_pred             E
Confidence            4

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A

Probab=98.14  E-value=2.6e-06  Score=67.30  Aligned_cols=36  Identities=17%  Similarity=0.253  Sum_probs=18.3

Q ss_pred             CCccEEEccCCCCCcccCccccCcccCcEEecCCCC
Q 037308          130 NKLVILNLRGSKSLKSLPSGIFNLEFLTKLDLSGCS  165 (321)
Q Consensus       130 ~~L~~L~l~~n~~~~~~p~~l~~l~~L~~L~l~~~~  165 (321)
                      .+|++||+++|.+...--..+..+++|++|++++|.
T Consensus        61 ~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~   96 (176)
T 3e4g_A           61 YKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCH   96 (176)
T ss_dssp             CCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCT
T ss_pred             ceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCC
Confidence            356666666665332222234455555555555554

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A

Probab=98.04  E-value=6.7e-06  Score=69.72  Aligned_cols=80  Identities=21%  Similarity=0.130  Sum_probs=46.3

Q ss_pred             hccCCCCeEecccCcccc--cccccccCCCCCCEEEecCCCCCCc-cccccCCCCCCcEEEcccCCCc-ccc-------h
Q 037308          196 ERLLRLGHLDLSDCKRLK--SLPSSLFKLKSLGVLNLGGCSNLQR-LPECLGQLSSPIILNLAKTNVE-RIP-------E  264 (321)
Q Consensus       196 ~~l~~L~~L~l~~n~~~~--~~~~~~~~l~~L~~L~l~~~~~~~~-~~~~~~~~~~L~~L~l~~n~l~-~l~-------~  264 (321)
                      .++++|+.|++++|.+.+  .++..++.+++|+.|+|++|.+.+. -...+..+ +|+.|++++|.+. .+|       .
T Consensus       167 ~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~~~l~~l~~l-~L~~L~L~~Npl~~~~~~~~~y~~~  245 (267)
T 3rw6_A          167 ENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGL-KLEELWLDGNSLCDTFRDQSTYISA  245 (267)
T ss_dssp             HHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSGGGGGGGTTS-CCSEEECTTSTTGGGCSSHHHHHHH
T ss_pred             hhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCchhhhhcccC-CcceEEccCCcCccccCcchhHHHH
Confidence            345667777777776655  3344455667777777777665543 11223333 6777777777765 333       1


Q ss_pred             hhhccCCcCEEe
Q 037308          265 SIIQLFVLRYLL  276 (321)
Q Consensus       265 ~l~~l~~L~~L~  276 (321)
                      .+..+|+|+.|+
T Consensus       246 il~~~P~L~~LD  257 (267)
T 3rw6_A          246 IRERFPKLLRLD  257 (267)
T ss_dssp             HHHHCTTCCEES
T ss_pred             HHHHCcccCeEC
Confidence            345566666664

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A

Probab=97.93  E-value=9.7e-06  Score=68.72  Aligned_cols=78  Identities=19%  Similarity=0.136  Sum_probs=57.0

Q ss_pred             cCCccEEEeccccccccC---hhhhccCCCCeEecccCccccccc-ccccCCCCCCEEEecCCCCCCccc-------ccc
Q 037308          175 SGNINWLFLRETAIEELP---SSIERLLRLGHLDLSDCKRLKSLP-SSLFKLKSLGVLNLGGCSNLQRLP-------ECL  243 (321)
Q Consensus       175 ~~~L~~L~l~~~~i~~l~---~~~~~l~~L~~L~l~~n~~~~~~~-~~~~~l~~L~~L~l~~~~~~~~~~-------~~~  243 (321)
                      +++|+.|++++|.+++++   ..+..+++|+.|++++|.+.+.-. ..+..+ +|+.|++++|++.+.+|       ..+
T Consensus       169 l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~~~l~~l~~l-~L~~L~L~~Npl~~~~~~~~~y~~~il  247 (267)
T 3rw6_A          169 IPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGL-KLEELWLDGNSLCDTFRDQSTYISAIR  247 (267)
T ss_dssp             CTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSGGGGGGGTTS-CCSEEECTTSTTGGGCSSHHHHHHHHH
T ss_pred             CCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCchhhhhcccC-CcceEEccCCcCccccCcchhHHHHHH
Confidence            677888888888888754   456788899999999988776411 223334 89999999988876554       246


Q ss_pred             CCCCCCcEEE
Q 037308          244 GQLSSPIILN  253 (321)
Q Consensus       244 ~~~~~L~~L~  253 (321)
                      ..+++|+.||
T Consensus       248 ~~~P~L~~LD  257 (267)
T 3rw6_A          248 ERFPKLLRLD  257 (267)
T ss_dssp             HHCTTCCEES
T ss_pred             HHCcccCeEC
Confidence            6788898887

>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1

Probab=97.56  E-value=8.5e-05  Score=59.73  Aligned_cols=89  Identities=15%  Similarity=0.016  Sum_probs=50.7

Q ss_pred             ChhhhccCCCCeEecccCccccc----ccccccCCCCCCEEEecCCCCCCc----cccccCCCCCCcEEEcccC---CCc
Q 037308          192 PSSIERLLRLGHLDLSDCKRLKS----LPSSLFKLKSLGVLNLGGCSNLQR----LPECLGQLSSPIILNLAKT---NVE  260 (321)
Q Consensus       192 ~~~~~~l~~L~~L~l~~n~~~~~----~~~~~~~l~~L~~L~l~~~~~~~~----~~~~~~~~~~L~~L~l~~n---~l~  260 (321)
                      ...+...+.|++|+|++|.+.+.    +...+..-++|+.|+|+.|.+...    +.+++..-+.|+.|++++|   .+.
T Consensus        63 a~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~ala~aL~~N~tL~~L~L~n~~~~~ig  142 (197)
T 1pgv_A           63 IEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARLLRSTLVTQSIVEFKADNQRQSVLG  142 (197)
T ss_dssp             HHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHHHHHTTTTCCCSEEECCCCSSCCCC
T ss_pred             HHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHHHHHHHhhCCceeEEECCCCcCcCcC
Confidence            33445556677777776665543    222334556677777776665532    3344555566777777654   333


Q ss_pred             -----ccchhhhccCCcCEEeccCC
Q 037308          261 -----RIPESIIQLFVLRYLLLSYS  280 (321)
Q Consensus       261 -----~l~~~l~~l~~L~~L~l~~n  280 (321)
                           .+.+.+..-+.|++|+++.|
T Consensus       143 ~~g~~~ia~aL~~N~tL~~L~l~~~  167 (197)
T 1pgv_A          143 NQVEMDMMMAIEENESLLRVGISFA  167 (197)
T ss_dssp             HHHHHHHHHHHHHCSSCCEEECCCC
T ss_pred             HHHHHHHHHHHHhCCCcCeEeccCC
Confidence                 24445555667777777655

>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1

Probab=97.07  E-value=0.00056  Score=54.94  Aligned_cols=86  Identities=20%  Similarity=0.135  Sum_probs=58.6

Q ss_pred             cCCccEEEeccccccc-----cChhhhccCCCCeEecccCccccc----ccccccCCCCCCEEEecCCC--CCC-----c
Q 037308          175 SGNINWLFLRETAIEE-----LPSSIERLLRLGHLDLSDCKRLKS----LPSSLFKLKSLGVLNLGGCS--NLQ-----R  238 (321)
Q Consensus       175 ~~~L~~L~l~~~~i~~-----l~~~~~~l~~L~~L~l~~n~~~~~----~~~~~~~l~~L~~L~l~~~~--~~~-----~  238 (321)
                      ...|+.|++++|.+.+     +...+...+.|++|+|++|.+.+.    +...+..-++|+.|++++|.  ..+     .
T Consensus        69 N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~ala~aL~~N~tL~~L~L~n~~~~~ig~~g~~~  148 (197)
T 1pgv_A           69 SKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARLLRSTLVTQSIVEFKADNQRQSVLGNQVEMD  148 (197)
T ss_dssp             CSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHHHHHTTTTCCCSEEECCCCSSCCCCHHHHHH
T ss_pred             CCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHHHHHHHhhCCceeEEECCCCcCcCcCHHHHHH
Confidence            4456677777777764     444566778899999999887753    33446667789999997642  223     2


Q ss_pred             cccccCCCCCCcEEEcccCCCc
Q 037308          239 LPECLGQLSSPIILNLAKTNVE  260 (321)
Q Consensus       239 ~~~~~~~~~~L~~L~l~~n~l~  260 (321)
                      +.+.+..-+.|+.|+++.|.+.
T Consensus       149 ia~aL~~N~tL~~L~l~~~~~g  170 (197)
T 1pgv_A          149 MMMAIEENESLLRVGISFASME  170 (197)
T ss_dssp             HHHHHHHCSSCCEEECCCCCHH
T ss_pred             HHHHHHhCCCcCeEeccCCCcc
Confidence            4455666788999999877643

>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*

Probab=96.21  E-value=0.0077  Score=44.87  Aligned_cols=33  Identities=24%  Similarity=0.176  Sum_probs=12.2

Q ss_pred             CCeEecccCcccccccccccCCCCCCEEEecCC
Q 037308          201 LGHLDLSDCKRLKSLPSSLFKLKSLGVLNLGGC  233 (321)
Q Consensus       201 L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~~  233 (321)
                      +++|+|++|.+....+..+..+++|+.|+|.+|
T Consensus        33 l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N   65 (130)
T 3rfe_A           33 TTELVLTGNNLTALPPGLLDALPALRTAHLGAN   65 (130)
T ss_dssp             CSEEECTTSCCSSCCTTTGGGCTTCCEEECCSS
T ss_pred             CCEEECCCCcCCccChhhhhhccccCEEEecCC
Confidence            344444443333322233333333333333333

>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*

Probab=95.97  E-value=0.014  Score=43.39  Aligned_cols=54  Identities=19%  Similarity=0.150  Sum_probs=41.4

Q ss_pred             EEecCCCCCcc--cccccccCCccEEEeccccccccChh-hhccCCCCeEecccCccc
Q 037308          158 KLDLSGCSKLK--RLLEISSGNINWLFLRETAIEELPSS-IERLLRLGHLDLSDCKRL  212 (321)
Q Consensus       158 ~L~l~~~~~~~--~~~~~~~~~L~~L~l~~~~i~~l~~~-~~~l~~L~~L~l~~n~~~  212 (321)
                      .++.+++ .++  .+|...+.+|+.|++++|.|+.++.. +..+++|++|+|++|...
T Consensus        12 ~v~Cs~~-~L~~~~vP~~lp~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~   68 (130)
T 3rfe_A           12 LVDCGRR-GLTWASLPTAFPVDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWR   68 (130)
T ss_dssp             EEECCSS-CCCTTTSCSCCCTTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCB
T ss_pred             EEEeCCC-CCccccCCCCCCcCCCEEECCCCcCCccChhhhhhccccCEEEecCCCee
Confidence            5566663 344  66655577899999999999998854 788899999999998754

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	321
d2astb2	284	c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p1	2e-05
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	7e-04
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	0.002
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	0.002

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.2 bits (100), Expect = 2e-05
 Identities = 20/99 (20%), Positives = 41/99 (41%), Gaps = 2/99 (2%)

Query: 157 TKLDLSGCSKLKRLLE-ISSGNINWLFLRETAIEELPSSIERLLRLGHLDLSDCK-RLKS 214
             LDL+G +    +   + S  +       + +++  +      R+ H+DLS+    + +
Sbjct: 3   QTLDLTGKNLHPDVTGRLLSQGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVST 62

Query: 215 LPSSLFKLKSLGVLNLGGCSNLQRLPECLGQLSSPIILN 253
           L   L +   L  L+L G      +   L + S+ + LN
Sbjct: 63  LHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLN 101

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 38.7 bits (88), Expect = 7e-04
 Identities = 17/73 (23%), Positives = 30/73 (41%), Gaps = 8/73 (10%)

Query: 201 LGHLDLSDCKRLKSLPSSLFKLKSLGVLNLGGCSNLQRLPECLGQLSSPIILNLAKTNVE 260
           L  L++S+ K L  LP+   +L+    L      +L  +PE    L     L++    + 
Sbjct: 286 LEELNVSNNK-LIELPALPPRLE---RLIASFN-HLAEVPELPQNLKQ---LHVEYNPLR 337

Query: 261 RIPESIIQLFVLR 273
             P+    +  LR
Sbjct: 338 EFPDIPESVEDLR 350

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 37.1 bits (84), Expect = 0.002
 Identities = 23/83 (27%), Positives = 37/83 (44%), Gaps = 7/83 (8%)

Query: 184 RETAIEELPSSIERLLRLGHLDLSDCKRLKSLPSSLFKLKSLGVLNLGGCSNLQRLPECL 243
           RE A+  L   ++R      L+L++   L SLP     L+SL       C++L  LPE  
Sbjct: 25  REMAVSRLRDCLDRQAH--ELELNNLG-LSSLPELPPHLESLVA----SCNSLTELPELP 77

Query: 244 GQLSSPIILNLAKTNVERIPESI 266
             L S ++ N     +  +P  +
Sbjct: 78  QSLKSLLVDNNNLKALSDLPPLL 100

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 37.3 bits (85), Expect = 0.002
 Identities = 47/272 (17%), Positives = 88/272 (32%), Gaps = 31/272 (11%)

Query: 10  LDMSTVKEIRLNLSTFTKMPKLRFLKFYSSSFNGENKCKVSYLQDPRFAEVKYFHWHGYP 69
           LD+   K   +    F  +  L  L   ++  +  +    + L      +++  +     
Sbjct: 36  LDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLV-----KLERLYLSKNQ 90

Query: 70  LKSLPSNLSAEKLVFLKVPYSDIEQLWNGEKHYSNLNQIINATCNKLIAKTPNPTLMPHL 129
           LK LP  +       L+V  ++I ++     +  N   ++    N L +          +
Sbjct: 91  LKELPEKMPKTL-QELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGM 149

Query: 130 NKLVILNLRGSKSLKSLPSGIFNLEFLTKLDLSGCSKLKRLLEISSGNINWLFLRETAIE 189
            KL  + +  +  + ++P G+     LT+L L G    K                     
Sbjct: 150 KKLSYIRIADTN-ITTIPQGLPPS--LTELHLDGNKITKVD------------------- 187

Query: 190 ELPSSIERLLRLGHLDLSDCKRLKSLPSSLFKLKSLGVLNLGGCSNLQRLPECLGQLSSP 249
              +S++ L  L  L LS          SL     L  L+L     L ++P  L      
Sbjct: 188 --AASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNN-KLVKVPGGLADHKYI 244

Query: 250 IILNLAKTNVERIPESIIQLFVLRYLLLSYSE 281
            ++ L   N+  I  +            SYS 
Sbjct: 245 QVVYLHNNNISAIGSNDFCPPGYNTKKASYSG 276

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	321
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	99.92
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	99.89
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	99.88
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	99.87
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	99.87
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	99.87
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	99.86
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	99.86
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	99.82
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	99.82
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	99.79
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	99.75
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	99.7
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.69
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.69
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.69
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	99.68
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.68
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	99.67
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	99.62
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	99.61
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	99.54
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	99.54
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	99.49
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	99.48
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	99.47
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	99.46
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	99.46
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	99.4
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	99.32
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	99.31
d2ifga3	156	High affinity nerve growth factor receptor, N-term	99.23
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	99.22
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	99.21
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	99.15
d2ifga3	156	High affinity nerve growth factor receptor, N-term	99.0
d1koha1	162	mRNA export factor tap {Human (Homo sapiens) [TaxI	98.21
d1pgva_	167	Tropomodulin C-terminal domain {nematode (Caenorha	98.0
d1koha1	162	mRNA export factor tap {Human (Homo sapiens) [TaxI	97.9
d1pgva_	167	Tropomodulin C-terminal domain {nematode (Caenorha	97.76
d1io0a_	166	Tropomodulin C-terminal domain {Chicken (Gallus ga	97.56
d1io0a_	166	Tropomodulin C-terminal domain {Chicken (Gallus ga	97.02

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=99.92  E-value=2.4e-25  Score=194.09  Aligned_cols=249  Identities=15%  Similarity=0.144  Sum_probs=113.7

Q ss_pred             CceEEEEeecCCCCccccceeccCCCCc-CcccEEEecC-CCC-CCCCCcC-CcCceeEEeccCCccccccc-CCCCCCC
Q 037308           30 KLRFLKFYSSSFNGENKCKVSYLQDPRF-AEVKYFHWHG-YPL-KSLPSNL-SAEKLVFLKVPYSDIEQLWN-GEKHYSN  104 (321)
Q Consensus        30 ~L~~L~l~~n~~~~~~~~~~~~~~~l~~-~~L~~l~l~~-~~l-~~~~~~~-~l~~L~~L~l~~~~l~~~~~-~~~~l~~  104 (321)
                      ++++|+++++.++|.    ...+..+.. ++|++|++++ |.+ +.+|..+ ++++|++|++++|++..+.. .+..++.
T Consensus        51 ~v~~L~L~~~~l~g~----~~lp~~l~~L~~L~~L~Ls~~N~l~g~iP~~i~~L~~L~~L~Ls~N~l~~~~~~~~~~~~~  126 (313)
T d1ogqa_          51 RVNNLDLSGLNLPKP----YPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKT  126 (313)
T ss_dssp             CEEEEEEECCCCSSC----EECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTT
T ss_pred             EEEEEECCCCCCCCC----CCCChHHhcCccccccccccccccccccccccccccccchhhhccccccccccccccchhh
Confidence            355555555544322    123333444 5555555543 233 2444443 45555555555555544322 2334444


Q ss_pred             hHhHHhhccccccccCCCCCCCCCCCCccEEEccCCCCCcccCccccCcccC-cEEecCCCCCccccccc-ccCCccEEE
Q 037308          105 LNQIINATCNKLIAKTPNPTLMPHLNKLVILNLRGSKSLKSLPSGIFNLEFL-TKLDLSGCSKLKRLLEI-SSGNINWLF  182 (321)
Q Consensus       105 L~~~l~l~~~~l~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~l~~l~~L-~~L~l~~~~~~~~~~~~-~~~~L~~L~  182 (321)
                      |+. ++++.|.+.+.+|.  .+..+++++.+++++|.+.+.+|..+..+..+ +.++++.|...+..+.. .......++
T Consensus       127 L~~-l~l~~N~~~~~~p~--~l~~l~~L~~l~l~~n~l~~~ip~~~~~l~~l~~~l~~~~n~l~~~~~~~~~~l~~~~l~  203 (313)
T d1ogqa_         127 LVT-LDFSYNALSGTLPP--SISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLNLAFVD  203 (313)
T ss_dssp             CCE-EECCSSEEESCCCG--GGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCCCSEEE
T ss_pred             hcc-cccccccccccCch--hhccCcccceeecccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            444 44544444434443  44555555555555555444445444444443 44444444333222222 111223344


Q ss_pred             eccccccc-cChhhhccCCCCeEecccCcccccccccccCCCCCCEEEecCCCCCCccccccCCCCCCcEEEcccCCCc-
Q 037308          183 LRETAIEE-LPSSIERLLRLGHLDLSDCKRLKSLPSSLFKLKSLGVLNLGGCSNLQRLPECLGQLSSPIILNLAKTNVE-  260 (321)
Q Consensus       183 l~~~~i~~-l~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~-  260 (321)
                      +..+.... +|..+..+++++.++++.|.+.+.++ .++.+++|+.|++++|++.+.+|++++.+++|+.|++++|+++ 
T Consensus       204 l~~~~~~~~~~~~~~~~~~l~~l~~~~~~l~~~~~-~~~~~~~L~~L~Ls~N~l~g~iP~~l~~L~~L~~L~Ls~N~l~g  282 (313)
T d1ogqa_         204 LSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLG-KVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCG  282 (313)
T ss_dssp             CCSSEEEECCGGGCCTTSCCSEEECCSSEECCBGG-GCCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEE
T ss_pred             ccccccccccccccccccccccccccccccccccc-ccccccccccccCccCeecccCChHHhCCCCCCEEECcCCcccc
Confidence            44444333 33334444555555555554444332 2444555555555555555555555555555555555555555 


Q ss_pred             ccchhhhccCCcCEEeccCCCCccccc
Q 037308          261 RIPESIIQLFVLRYLLLSYSERIQSVS  287 (321)
Q Consensus       261 ~l~~~l~~l~~L~~L~l~~n~~l~~~~  287 (321)
                      .+|+ ++.+++|+.+++.+|+.+...|
T Consensus       283 ~iP~-~~~L~~L~~l~l~~N~~l~g~p  308 (313)
T d1ogqa_         283 EIPQ-GGNLQRFDVSAYANNKCLCGSP  308 (313)
T ss_dssp             ECCC-STTGGGSCGGGTCSSSEEESTT
T ss_pred             cCCC-cccCCCCCHHHhCCCccccCCC
Confidence            4442 3444455555555554444443

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.89  E-value=2.8e-22  Score=178.75  Aligned_cols=254  Identities=17%  Similarity=0.138  Sum_probs=141.6

Q ss_pred             hhcCCCCceEEEEeecCCCCccccceeccCCCCc-CcccEEEecCCCCCCCCCcCCcCceeEEeccCCcccccccCCCC-
Q 037308           24 TFTKMPKLRFLKFYSSSFNGENKCKVSYLQDPRF-AEVKYFHWHGYPLKSLPSNLSAEKLVFLKVPYSDIEQLWNGEKH-  101 (321)
Q Consensus        24 ~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~l~~-~~L~~l~l~~~~l~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~-  101 (321)
                      .+..+++|++|++++|.+++.        +.+.. ++|++|++++|.+..++....+++|+.++++++.+..+...... 
T Consensus        61 gl~~L~nL~~L~Ls~N~l~~l--------~~l~~L~~L~~L~L~~n~i~~i~~l~~l~~L~~L~~~~~~~~~~~~~~~~~  132 (384)
T d2omza2          61 GVEYLNNLTQINFSNNQLTDI--------TPLKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITDIDPLKNLT  132 (384)
T ss_dssp             TGGGCTTCCEEECCSSCCCCC--------GGGTTCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCCCGGGTTCT
T ss_pred             ccccCCCCCEEeCcCCcCCCC--------ccccCCccccccccccccccccccccccccccccccccccccccccccccc
Confidence            366778888888888875532        22555 88888888888888777656788888888887776553211100 


Q ss_pred             ---------------------------------------------------------------CCChHhHHhhccccccc
Q 037308          102 ---------------------------------------------------------------YSNLNQIINATCNKLIA  118 (321)
Q Consensus       102 ---------------------------------------------------------------l~~L~~~l~l~~~~l~~  118 (321)
                                                                                     ++++.. ++++.+.++ 
T Consensus       133 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-l~l~~n~i~-  210 (384)
T d2omza2         133 NLNRLELSSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVSDISVLAKLTNLES-LIATNNQIS-  210 (384)
T ss_dssp             TCSEEEEEEEEECCCGGGTTCTTCSEEEEEESCCCCGGGTTCTTCCEEECCSSCCCCCGGGGGCTTCSE-EECCSSCCC-
T ss_pred             cccccccccccccccccccccccccccccccccchhhhhccccccccccccccccccccccccccccce-eeccCCccC-
Confidence                                                                           000111 112222222 


Q ss_pred             cCCCCCCCCCCCCccEEEccCCCCCcccCccccCcccCcEEecCCCCCcccccccccCCccEEEeccccccccChhhhcc
Q 037308          119 KTPNPTLMPHLNKLVILNLRGSKSLKSLPSGIFNLEFLTKLDLSGCSKLKRLLEISSGNINWLFLRETAIEELPSSIERL  198 (321)
Q Consensus       119 ~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~i~~l~~~~~~l  198 (321)
                      .++   ....+++|++|++++|.+ ..++ .+..+++|+.+++++|...+..+...+++|++|+++++.++++++ +..+
T Consensus       211 ~~~---~~~~~~~L~~L~l~~n~l-~~~~-~l~~l~~L~~L~l~~n~l~~~~~~~~~~~L~~L~l~~~~l~~~~~-~~~~  284 (384)
T d2omza2         211 DIT---PLGILTNLDELSLNGNQL-KDIG-TLASLTNLTDLDLANNQISNLAPLSGLTKLTELKLGANQISNISP-LAGL  284 (384)
T ss_dssp             CCG---GGGGCTTCCEEECCSSCC-CCCG-GGGGCTTCSEEECCSSCCCCCGGGTTCTTCSEEECCSSCCCCCGG-GTTC
T ss_pred             CCC---cccccCCCCEEECCCCCC-CCcc-hhhcccccchhccccCccCCCCcccccccCCEeeccCcccCCCCc-cccc
Confidence            111   122233444444444432 1222 234444444444444432221111134445555555554444432 3344


Q ss_pred             CCCCeEecccCcccccccccccCCCCCCEEEecCCCCCCccccccCCCCCCcEEEcccCCCcccchhhhccCCcCEEecc
Q 037308          199 LRLGHLDLSDCKRLKSLPSSLFKLKSLGVLNLGGCSNLQRLPECLGQLSSPIILNLAKTNVERIPESIIQLFVLRYLLLS  278 (321)
Q Consensus       199 ~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~l~~~l~~l~~L~~L~l~  278 (321)
                      +.++.+++..|.+.+  ...+..+++++.|++++|++.+..  .+..+++|+.|++++|+++.++ .+..+++|++|+++
T Consensus       285 ~~l~~l~~~~n~l~~--~~~~~~~~~l~~L~ls~n~l~~l~--~l~~l~~L~~L~L~~n~l~~l~-~l~~l~~L~~L~l~  359 (384)
T d2omza2         285 TALTNLELNENQLED--ISPISNLKNLTYLTLYFNNISDIS--PVSSLTKLQRLFFANNKVSDVS-SLANLTNINWLSAG  359 (384)
T ss_dssp             TTCSEEECCSSCCSC--CGGGGGCTTCSEEECCSSCCSCCG--GGGGCTTCCEEECCSSCCCCCG-GGGGCTTCCEEECC
T ss_pred             ccccccccccccccc--ccccchhcccCeEECCCCCCCCCc--ccccCCCCCEEECCCCCCCCCh-hHcCCCCCCEEECC
Confidence            444555555444332  123566778888888887765542  3677888888888888888776 47778888888888


Q ss_pred             CCCCccccc---Cccccccccccc
Q 037308          279 YSERIQSVS---LPLARGILEDTQ  299 (321)
Q Consensus       279 ~n~~l~~~~---~~~~l~~l~~~~  299 (321)
                      +| .+++++   -.++++.|++++
T Consensus       360 ~N-~l~~l~~l~~l~~L~~L~L~~  382 (384)
T d2omza2         360 HN-QISDLTPLANLTRITQLGLND  382 (384)
T ss_dssp             SS-CCCBCGGGTTCTTCSEEECCC
T ss_pred             CC-cCCCChhhccCCCCCEeeCCC
Confidence            88 677665   224556665544

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=99.88  E-value=1.2e-22  Score=176.88  Aligned_cols=236  Identities=17%  Similarity=0.201  Sum_probs=197.3

Q ss_pred             CcccEEEecCCCCC---CCCCcC-CcCceeEEeccC-Cccc-ccccCCCCCCChHhHHhhccccccccCCCCCCCCCCCC
Q 037308           58 AEVKYFHWHGYPLK---SLPSNL-SAEKLVFLKVPY-SDIE-QLWNGEKHYSNLNQIINATCNKLIAKTPNPTLMPHLNK  131 (321)
Q Consensus        58 ~~L~~l~l~~~~l~---~~~~~~-~l~~L~~L~l~~-~~l~-~~~~~~~~l~~L~~~l~l~~~~l~~~~~~~~~~~~l~~  131 (321)
                      .+++.|+++++.+.   .+|..+ ++++|++|++++ |.+. .+|..++.+++|+. ++++.|.+.+..+.  .+..+.+
T Consensus        50 ~~v~~L~L~~~~l~g~~~lp~~l~~L~~L~~L~Ls~~N~l~g~iP~~i~~L~~L~~-L~Ls~N~l~~~~~~--~~~~~~~  126 (313)
T d1ogqa_          50 YRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHY-LYITHTNVSGAIPD--FLSQIKT  126 (313)
T ss_dssp             CCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSE-EEEEEECCEEECCG--GGGGCTT
T ss_pred             EEEEEEECCCCCCCCCCCCChHHhcCccccccccccccccccccccccccccccch-hhhccccccccccc--cccchhh
Confidence            47999999999876   467766 899999999986 6776 67888999999999 99999999955554  6888999


Q ss_pred             ccEEEccCCCCCcccCccccCcccCcEEecCCCCCccccccc--ccCC-ccEEEecccccccc-ChhhhccCCCCeEecc
Q 037308          132 LVILNLRGSKSLKSLPSGIFNLEFLTKLDLSGCSKLKRLLEI--SSGN-INWLFLRETAIEEL-PSSIERLLRLGHLDLS  207 (321)
Q Consensus       132 L~~L~l~~n~~~~~~p~~l~~l~~L~~L~l~~~~~~~~~~~~--~~~~-L~~L~l~~~~i~~l-~~~~~~l~~L~~L~l~  207 (321)
                      |+++++++|.+...+|..++.++.++.+++++|...+.+|..  .+.+ ++.++++.|.+++. |..+..+ ....+++.
T Consensus       127 L~~l~l~~N~~~~~~p~~l~~l~~L~~l~l~~n~l~~~ip~~~~~l~~l~~~l~~~~n~l~~~~~~~~~~l-~~~~l~l~  205 (313)
T d1ogqa_         127 LVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANL-NLAFVDLS  205 (313)
T ss_dssp             CCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGC-CCSEEECC
T ss_pred             hcccccccccccccCchhhccCcccceeecccccccccccccccccccccccccccccccccccccccccc-cccccccc
Confidence            999999999988889999999999999999998877676654  2344 48899999999874 4445555 45689999


Q ss_pred             cCcccccccccccCCCCCCEEEecCCCCCCccccccCCCCCCcEEEcccCCCc-ccchhhhccCCcCEEeccCCCCcc-c
Q 037308          208 DCKRLKSLPSSLFKLKSLGVLNLGGCSNLQRLPECLGQLSSPIILNLAKTNVE-RIPESIIQLFVLRYLLLSYSERIQ-S  285 (321)
Q Consensus       208 ~n~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~-~l~~~l~~l~~L~~L~l~~n~~l~-~  285 (321)
                      .+...+..|..+..+++++.+++++|.+.+.++ .++.+++|+.|++++|+++ .+|..++.+++|++|++++| .++ .
T Consensus       206 ~~~~~~~~~~~~~~~~~l~~l~~~~~~l~~~~~-~~~~~~~L~~L~Ls~N~l~g~iP~~l~~L~~L~~L~Ls~N-~l~g~  283 (313)
T d1ogqa_         206 RNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLG-KVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFN-NLCGE  283 (313)
T ss_dssp             SSEEEECCGGGCCTTSCCSEEECCSSEECCBGG-GCCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSS-EEEEE
T ss_pred             ccccccccccccccccccccccccccccccccc-ccccccccccccCccCeecccCChHHhCCCCCCEEECcCC-ccccc
Confidence            999888999999999999999999998877665 6888999999999999999 89999999999999999999 555 7


Q ss_pred             ccC---ccccccccccc
Q 037308          286 VSL---PLARGILEDTQ  299 (321)
Q Consensus       286 ~~~---~~~l~~l~~~~  299 (321)
                      +|-   .++++.+++.+
T Consensus       284 iP~~~~L~~L~~l~l~~  300 (313)
T d1ogqa_         284 IPQGGNLQRFDVSAYAN  300 (313)
T ss_dssp             CCCSTTGGGSCGGGTCS
T ss_pred             CCCcccCCCCCHHHhCC
Confidence            772   24455554444

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.87  E-value=5.7e-21  Score=165.42  Aligned_cols=254  Identities=14%  Similarity=0.128  Sum_probs=184.7

Q ss_pred             CCceEEEEeecCCCCccccceeccCCCCc-CcccEEEecCCCCCCCCCc-C-CcCceeEEeccCCcccccccCCCCCCCh
Q 037308           29 PKLRFLKFYSSSFNGENKCKVSYLQDPRF-AEVKYFHWHGYPLKSLPSN-L-SAEKLVFLKVPYSDIEQLWNGEKHYSNL  105 (321)
Q Consensus        29 ~~L~~L~l~~n~~~~~~~~~~~~~~~l~~-~~L~~l~l~~~~l~~~~~~-~-~l~~L~~L~l~~~~l~~~~~~~~~l~~L  105 (321)
                      +++++|++++|+++      ......+.. ++|+++++++|.+..++.. + .+++|++|++++|+++.++...  .+.+
T Consensus        31 ~~l~~L~Ls~N~i~------~l~~~~f~~l~~L~~L~l~~n~~~~i~~~~f~~l~~L~~L~l~~n~l~~l~~~~--~~~l  102 (305)
T d1xkua_          31 PDTALLDLQNNKIT------EIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLKELPEKM--PKTL  102 (305)
T ss_dssp             TTCCEEECCSSCCC------CBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCSBCCSSC--CTTC
T ss_pred             CCCCEEECcCCcCC------CcChhHhhccccccccccccccccccchhhhhCCCccCEecccCCccCcCccch--hhhh
Confidence            57889999888743      111234555 8899999998888877543 4 7889999999999888876543  3456


Q ss_pred             HhHHhhccccccccCCCCCCCCCCCCccEEEccCCCCC--cccCccccCcccCcEEecCCCCCcccccccccCCccEEEe
Q 037308          106 NQIINATCNKLIAKTPNPTLMPHLNKLVILNLRGSKSL--KSLPSGIFNLEFLTKLDLSGCSKLKRLLEISSGNINWLFL  183 (321)
Q Consensus       106 ~~~l~l~~~~l~~~~~~~~~~~~l~~L~~L~l~~n~~~--~~~p~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l  183 (321)
                      .. +....|.+. .++. ..+.....+..++...+...  ...+..+..+++|+.+++.+|. +..++...+++|+.|++
T Consensus       103 ~~-L~~~~n~l~-~l~~-~~~~~~~~~~~l~~~~n~~~~~~~~~~~~~~l~~L~~l~l~~n~-l~~l~~~~~~~L~~L~l  178 (305)
T d1xkua_         103 QE-LRVHENEIT-KVRK-SVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTN-ITTIPQGLPPSLTELHL  178 (305)
T ss_dssp             CE-EECCSSCCC-BBCH-HHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSC-CCSCCSSCCTTCSEEEC
T ss_pred             hh-hhccccchh-hhhh-hhhhccccccccccccccccccCCCccccccccccCccccccCC-ccccCcccCCccCEEEC
Confidence            66 777777776 4432 13556677778887776532  2334457778889999998865 44455555788999999


Q ss_pred             ccccccccC-hhhhccCCCCeEecccCcccccccccccCCCCCCEEEecCCCCCCccccccCCCCCCcEEEcccCCCccc
Q 037308          184 RETAIEELP-SSIERLLRLGHLDLSDCKRLKSLPSSLFKLKSLGVLNLGGCSNLQRLPECLGQLSSPIILNLAKTNVERI  262 (321)
Q Consensus       184 ~~~~i~~l~-~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~l  262 (321)
                      .+|.+...+ ..+..++.+++|++++|.+.+..+..+.++++|+.|++++|.+. .+|.++..+++|+.|++++|+++.+
T Consensus       179 ~~n~~~~~~~~~~~~~~~l~~L~~s~n~l~~~~~~~~~~l~~L~~L~L~~N~L~-~lp~~l~~l~~L~~L~Ls~N~i~~i  257 (305)
T d1xkua_         179 DGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNISAI  257 (305)
T ss_dssp             TTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCS-SCCTTTTTCSSCCEEECCSSCCCCC
T ss_pred             CCCcCCCCChhHhhccccccccccccccccccccccccccccceeeeccccccc-ccccccccccCCCEEECCCCccCcc
Confidence            988888744 56788888999999998888777788888999999999998654 5677888899999999999998877


Q ss_pred             chh-------hhccCCcCEEeccCCCCccccc-Ccccccccc
Q 037308          263 PES-------IIQLFVLRYLLLSYSERIQSVS-LPLARGILE  296 (321)
Q Consensus       263 ~~~-------l~~l~~L~~L~l~~n~~l~~~~-~~~~l~~l~  296 (321)
                      +..       ....++|+.|++.+| .++.++ .|..++-++
T Consensus       258 ~~~~f~~~~~~~~~~~L~~L~L~~N-~~~~~~~~~~~f~~~~  298 (305)
T d1xkua_         258 GSNDFCPPGYNTKKASYSGVSLFSN-PVQYWEIQPSTFRCVY  298 (305)
T ss_dssp             CTTSSSCSSCCTTSCCCSEEECCSS-SSCGGGSCGGGGTTCC
T ss_pred             ChhhccCcchhcccCCCCEEECCCC-cCccCcCCHhHhcccc
Confidence            632       234678899999999 456555 444445443

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.87  E-value=4e-21  Score=166.38  Aligned_cols=234  Identities=15%  Similarity=0.126  Sum_probs=191.6

Q ss_pred             CcccEEEecCCCCCCCCCc-C-CcCceeEEeccCCcccccc-cCCCCCCChHhHHhhccccccccCCCCCCCCCCCCccE
Q 037308           58 AEVKYFHWHGYPLKSLPSN-L-SAEKLVFLKVPYSDIEQLW-NGEKHYSNLNQIINATCNKLIAKTPNPTLMPHLNKLVI  134 (321)
Q Consensus        58 ~~L~~l~l~~~~l~~~~~~-~-~l~~L~~L~l~~~~l~~~~-~~~~~l~~L~~~l~l~~~~l~~~~~~~~~~~~l~~L~~  134 (321)
                      +++++|++++|.++.++.. + .+++|++|++++|.+..+. ..+..++.++. +++++|.++ .++.  .  ....++.
T Consensus        31 ~~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~l~~n~~~~i~~~~f~~l~~L~~-L~l~~n~l~-~l~~--~--~~~~l~~  104 (305)
T d1xkua_          31 PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLER-LYLSKNQLK-ELPE--K--MPKTLQE  104 (305)
T ss_dssp             TTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCE-EECCSSCCS-BCCS--S--CCTTCCE
T ss_pred             CCCCEEECcCCcCCCcChhHhhccccccccccccccccccchhhhhCCCccCE-ecccCCccC-cCcc--c--hhhhhhh
Confidence            7899999999999999864 4 7899999999999999875 45778899999 999999998 7764  2  3468889


Q ss_pred             EEccCCCCCcccCccccCcccCcEEecCCCCCcccc--cc--cccCCccEEEeccccccccChhhhccCCCCeEecccCc
Q 037308          135 LNLRGSKSLKSLPSGIFNLEFLTKLDLSGCSKLKRL--LE--ISSGNINWLFLRETAIEELPSSIERLLRLGHLDLSDCK  210 (321)
Q Consensus       135 L~l~~n~~~~~~p~~l~~l~~L~~L~l~~~~~~~~~--~~--~~~~~L~~L~l~~~~i~~l~~~~~~l~~L~~L~l~~n~  210 (321)
                      |++++|.+....+..+.....+..+....+......  +.  ..+++|+.+++.+|.+..+|..+  .++|++|++++|.
T Consensus       105 L~~~~n~l~~l~~~~~~~~~~~~~l~~~~n~~~~~~~~~~~~~~l~~L~~l~l~~n~l~~l~~~~--~~~L~~L~l~~n~  182 (305)
T d1xkua_         105 LRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQGL--PPSLTELHLDGNK  182 (305)
T ss_dssp             EECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCCSCCSSC--CTTCSEEECTTSC
T ss_pred             hhccccchhhhhhhhhhccccccccccccccccccCCCccccccccccCccccccCCccccCccc--CCccCEEECCCCc
Confidence            999998855443444667778888888775432211  11  14678999999999999988553  5799999999999


Q ss_pred             ccccccccccCCCCCCEEEecCCCCCCccccccCCCCCCcEEEcccCCCcccchhhhccCCcCEEeccCCCCccccc---
Q 037308          211 RLKSLPSSLFKLKSLGVLNLGGCSNLQRLPECLGQLSSPIILNLAKTNVERIPESIIQLFVLRYLLLSYSERIQSVS---  287 (321)
Q Consensus       211 ~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~l~~~l~~l~~L~~L~l~~n~~l~~~~---  287 (321)
                      .....+..+.+++.+++|++++|.+.+..+..+.++++|++|++++|.++.+|..+..+++|++|++++| .|+.++   
T Consensus       183 ~~~~~~~~~~~~~~l~~L~~s~n~l~~~~~~~~~~l~~L~~L~L~~N~L~~lp~~l~~l~~L~~L~Ls~N-~i~~i~~~~  261 (305)
T d1xkua_         183 ITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLVKVPGGLADHKYIQVVYLHNN-NISAIGSND  261 (305)
T ss_dssp             CCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCSSCCTTTTTCSSCCEEECCSS-CCCCCCTTS
T ss_pred             CCCCChhHhhccccccccccccccccccccccccccccceeeecccccccccccccccccCCCEEECCCC-ccCccChhh
Confidence            8888888899999999999999988887778889999999999999999999999999999999999999 788875   


Q ss_pred             --------Ccccccccccccc
Q 037308          288 --------LPLARGILEDTQR  300 (321)
Q Consensus       288 --------~~~~l~~l~~~~~  300 (321)
                              .+.+++.+++.+.
T Consensus       262 f~~~~~~~~~~~L~~L~L~~N  282 (305)
T d1xkua_         262 FCPPGYNTKKASYSGVSLFSN  282 (305)
T ss_dssp             SSCSSCCTTSCCCSEEECCSS
T ss_pred             ccCcchhcccCCCCEEECCCC
Confidence                    2345666766654

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.87  E-value=2.7e-21  Score=164.32  Aligned_cols=195  Identities=22%  Similarity=0.162  Sum_probs=133.6

Q ss_pred             CcccEEEecCCCCCCCCCcCCcCceeEEeccCCccccccc-CCCCCCChHhHHhhccccccccCCCCCCCCCCCCccEEE
Q 037308           58 AEVKYFHWHGYPLKSLPSNLSAEKLVFLKVPYSDIEQLWN-GEKHYSNLNQIINATCNKLIAKTPNPTLMPHLNKLVILN  136 (321)
Q Consensus        58 ~~L~~l~l~~~~l~~~~~~~~l~~L~~L~l~~~~l~~~~~-~~~~l~~L~~~l~l~~~~l~~~~~~~~~~~~l~~L~~L~  136 (321)
                      ..+...+.+++.++.+|..+. +++++|++++|.++.++. .+..+++|++ |+++.|.++ .++   .+..+++|++|+
T Consensus        10 ~~~~~v~C~~~~L~~iP~~lp-~~l~~L~Ls~N~i~~l~~~~f~~l~~L~~-L~L~~N~l~-~l~---~~~~l~~L~~L~   83 (266)
T d1p9ag_          10 ASHLEVNCDKRNLTALPPDLP-KDTTILHLSENLLYTFSLATLMPYTRLTQ-LNLDRAELT-KLQ---VDGTLPVLGTLD   83 (266)
T ss_dssp             TTCCEEECTTSCCSSCCSCCC-TTCCEEECTTSCCSEEEGGGGTTCTTCCE-EECTTSCCC-EEE---CCSCCTTCCEEE
T ss_pred             CCCeEEEccCCCCCeeCcCcC-cCCCEEECcCCcCCCcCHHHhhccccccc-ccccccccc-ccc---cccccccccccc
Confidence            445556777778888876542 578888888888888764 4567788888 888888887 665   356788888888


Q ss_pred             ccCCCCCcccCccccCcccCcEEecCCCCCccccccc--ccCCccEEEeccccccccChh-hhccCCCCeEecccCcccc
Q 037308          137 LRGSKSLKSLPSGIFNLEFLTKLDLSGCSKLKRLLEI--SSGNINWLFLRETAIEELPSS-IERLLRLGHLDLSDCKRLK  213 (321)
Q Consensus       137 l~~n~~~~~~p~~l~~l~~L~~L~l~~~~~~~~~~~~--~~~~L~~L~l~~~~i~~l~~~-~~~l~~L~~L~l~~n~~~~  213 (321)
                      +++|.+ ...+..+..+++|+.|+++.+...+..+..  .+.+++.|++.+|.++.++.. +..++.++.+++++|++.+
T Consensus        84 Ls~N~l-~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~l~~L~l~~n~l~~l~~~~~~~l~~l~~l~l~~N~l~~  162 (266)
T d1p9ag_          84 LSHNQL-QSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTE  162 (266)
T ss_dssp             CCSSCC-SSCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSC
T ss_pred             cccccc-cccccccccccccccccccccccceeeccccccccccccccccccccceeccccccccccchhcccccccccc
Confidence            888874 445556777888888888876543322221  355666677777777666543 4556677777777777666


Q ss_pred             cccccccCCCCCCEEEecCCCCCCccccccCCCCCCcEEEcccCCCc
Q 037308          214 SLPSSLFKLKSLGVLNLGGCSNLQRLPECLGQLSSPIILNLAKTNVE  260 (321)
Q Consensus       214 ~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~  260 (321)
                      ..+..+..+++|++|++++|.+. .+|+.+..+++|+.|++++|.+.
T Consensus       163 ~~~~~~~~l~~L~~L~Ls~N~L~-~lp~~~~~~~~L~~L~L~~Np~~  208 (266)
T d1p9ag_         163 LPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGNPWL  208 (266)
T ss_dssp             CCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCCCSEEECCSCCBC
T ss_pred             cCccccccccccceeecccCCCc-ccChhHCCCCCCCEEEecCCCCC
Confidence            55566666777777777776544 56666666677777777776665

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.86  E-value=9.2e-21  Score=168.81  Aligned_cols=247  Identities=15%  Similarity=0.134  Sum_probs=189.5

Q ss_pred             eecCchhhhccChhhhcCCCCceEEEEeecCCCCccccceeccCCCCc-CcccEEEecCCCCCCCCC-------------
Q 037308           10 LDMSTVKEIRLNLSTFTKMPKLRFLKFYSSSFNGENKCKVSYLQDPRF-AEVKYFHWHGYPLKSLPS-------------   75 (321)
Q Consensus        10 l~~~~~~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~l~~-~~L~~l~l~~~~l~~~~~-------------   75 (321)
                      ||++++...++  +.++++++|++|++++|.+.+.        ..+.. ++|+.+++.++.+..++.             
T Consensus        71 L~Ls~N~l~~l--~~l~~L~~L~~L~L~~n~i~~i--------~~l~~l~~L~~L~~~~~~~~~~~~~~~~~~~~~~~~~  140 (384)
T d2omza2          71 INFSNNQLTDI--TPLKNLTKLVDILMNNNQIADI--------TPLANLTNLTGLTLFNNQITDIDPLKNLTNLNRLELS  140 (384)
T ss_dssp             EECCSSCCCCC--GGGTTCTTCCEEECCSSCCCCC--------GGGTTCTTCCEEECCSSCCCCCGGGTTCTTCSEEEEE
T ss_pred             EeCcCCcCCCC--ccccCCcccccccccccccccc--------ccccccccccccccccccccccccccccccccccccc
Confidence            34455544444  3489999999999999986532        12334 667777766554332111             


Q ss_pred             ----------------------------------------------------cCCcCceeEEeccCCcccccccCCCCCC
Q 037308           76 ----------------------------------------------------NLSAEKLVFLKVPYSDIEQLWNGEKHYS  103 (321)
Q Consensus        76 ----------------------------------------------------~~~l~~L~~L~l~~~~l~~~~~~~~~l~  103 (321)
                                                                          ...+++++.+++++|.++.+.. ....+
T Consensus       141 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~l~~n~i~~~~~-~~~~~  219 (384)
T d2omza2         141 SNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQISDITP-LGILT  219 (384)
T ss_dssp             EEEECCCGGGTTCTTCSEEEEEESCCCCGGGTTCTTCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCCCGG-GGGCT
T ss_pred             cccccccccccccccccccccccccchhhhhccccccccccccccccccccccccccccceeeccCCccCCCCc-ccccC
Confidence                                                                1146778888998888887643 45677


Q ss_pred             ChHhHHhhccccccccCCCCCCCCCCCCccEEEccCCCCCcccCccccCcccCcEEecCCCCCcccccccccCCccEEEe
Q 037308          104 NLNQIINATCNKLIAKTPNPTLMPHLNKLVILNLRGSKSLKSLPSGIFNLEFLTKLDLSGCSKLKRLLEISSGNINWLFL  183 (321)
Q Consensus       104 ~L~~~l~l~~~~l~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l  183 (321)
                      +++. ++++.|.++ .++   .+..+++|+.|++++|.+. .+++ ++.+++|+.++++++......+......++.+++
T Consensus       220 ~L~~-L~l~~n~l~-~~~---~l~~l~~L~~L~l~~n~l~-~~~~-~~~~~~L~~L~l~~~~l~~~~~~~~~~~l~~l~~  292 (384)
T d2omza2         220 NLDE-LSLNGNQLK-DIG---TLASLTNLTDLDLANNQIS-NLAP-LSGLTKLTELKLGANQISNISPLAGLTALTNLEL  292 (384)
T ss_dssp             TCCE-EECCSSCCC-CCG---GGGGCTTCSEEECCSSCCC-CCGG-GTTCTTCSEEECCSSCCCCCGGGTTCTTCSEEEC
T ss_pred             CCCE-EECCCCCCC-Ccc---hhhcccccchhccccCccC-CCCc-ccccccCCEeeccCcccCCCCccccccccccccc
Confidence            8888 999999988 655   5788999999999999854 4444 7889999999999876544333335788999999


Q ss_pred             ccccccccChhhhccCCCCeEecccCcccccccccccCCCCCCEEEecCCCCCCccccccCCCCCCcEEEcccCCCcccc
Q 037308          184 RETAIEELPSSIERLLRLGHLDLSDCKRLKSLPSSLFKLKSLGVLNLGGCSNLQRLPECLGQLSSPIILNLAKTNVERIP  263 (321)
Q Consensus       184 ~~~~i~~l~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~l~  263 (321)
                      ..|.+++++. +..++++++|++++|++.+..  .+..+++|+.|++++|++.+ ++ .+.++++|+.|++++|+++.++
T Consensus       293 ~~n~l~~~~~-~~~~~~l~~L~ls~n~l~~l~--~l~~l~~L~~L~L~~n~l~~-l~-~l~~l~~L~~L~l~~N~l~~l~  367 (384)
T d2omza2         293 NENQLEDISP-ISNLKNLTYLTLYFNNISDIS--PVSSLTKLQRLFFANNKVSD-VS-SLANLTNINWLSAGHNQISDLT  367 (384)
T ss_dssp             CSSCCSCCGG-GGGCTTCSEEECCSSCCSCCG--GGGGCTTCCEEECCSSCCCC-CG-GGGGCTTCCEEECCSSCCCBCG
T ss_pred             cccccccccc-cchhcccCeEECCCCCCCCCc--ccccCCCCCEEECCCCCCCC-Ch-hHcCCCCCCEEECCCCcCCCCh
Confidence            9999998764 778899999999999977643  27899999999999997654 44 6889999999999999999887


Q ss_pred             hhhhccCCcCEEeccCC
Q 037308          264 ESIIQLFVLRYLLLSYS  280 (321)
Q Consensus       264 ~~l~~l~~L~~L~l~~n  280 (321)
                      + +.++++|++|+|++|
T Consensus       368 ~-l~~l~~L~~L~L~~N  383 (384)
T d2omza2         368 P-LANLTRITQLGLNDQ  383 (384)
T ss_dssp             G-GTTCTTCSEEECCCE
T ss_pred             h-hccCCCCCEeeCCCC
Confidence            5 889999999999987

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.86  E-value=1.9e-20  Score=160.56  Aligned_cols=213  Identities=22%  Similarity=0.266  Sum_probs=107.3

Q ss_pred             cCCCCCCCCCcCCcCceeEEeccCCccccccc-CCCCCCChHhHHhhccccccccCCCCCCCCCCCCccEEEccCCCCCc
Q 037308           66 HGYPLKSLPSNLSAEKLVFLKVPYSDIEQLWN-GEKHYSNLNQIINATCNKLIAKTPNPTLMPHLNKLVILNLRGSKSLK  144 (321)
Q Consensus        66 ~~~~l~~~~~~~~l~~L~~L~l~~~~l~~~~~-~~~~l~~L~~~l~l~~~~l~~~~~~~~~~~~l~~L~~L~l~~n~~~~  144 (321)
                      .++.++.+|..+ .+++++|++++|.+++++. .+..+++|+. ++++.+.+. .++. ..+..+..++.+....+....
T Consensus        19 ~~~~L~~iP~~i-p~~~~~L~Ls~N~i~~i~~~~f~~l~~L~~-L~ls~n~l~-~i~~-~~~~~~~~~~~l~~~~~~~~~   94 (284)
T d1ozna_          19 PQQGLQAVPVGI-PAASQRIFLHGNRISHVPAASFRACRNLTI-LWLHSNVLA-RIDA-AAFTGLALLEQLDLSDNAQLR   94 (284)
T ss_dssp             CSSCCSSCCTTC-CTTCSEEECTTSCCCEECTTTTTTCTTCCE-EECCSSCCC-EECT-TTTTTCTTCCEEECCSCTTCC
T ss_pred             CCCCCCccCCCC-CCCCCEEECcCCcCCCCCHHHhhccccccc-ccccccccc-cccc-ccccccccccccccccccccc
Confidence            333444444332 1334555555555544443 2344444544 555555444 2221 134445555555444332232


Q ss_pred             cc-CccccCcccCcEEecCCCCCccccccc--ccCCccEEEeccccccccCh-hhhccCCCCeEecccCccccccccccc
Q 037308          145 SL-PSGIFNLEFLTKLDLSGCSKLKRLLEI--SSGNINWLFLRETAIEELPS-SIERLLRLGHLDLSDCKRLKSLPSSLF  220 (321)
Q Consensus       145 ~~-p~~l~~l~~L~~L~l~~~~~~~~~~~~--~~~~L~~L~l~~~~i~~l~~-~~~~l~~L~~L~l~~n~~~~~~~~~~~  220 (321)
                      .+ +..+..+++|+.|+++.|......+..  ...+|+.+++++|.+++++. .+..+++|+.|++++|.+....+..+.
T Consensus        95 ~l~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~l~l~~N~l~~i~~~~f~~~~~L~~L~l~~N~l~~l~~~~f~  174 (284)
T d1ozna_          95 SVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFR  174 (284)
T ss_dssp             CCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECTTTTT
T ss_pred             cccchhhcccccCCEEecCCcccccccccccchhcccchhhhccccccccChhHhccccchhhcccccCcccccchhhhc
Confidence            22 334555555555555554432211111  24455556666566655543 344555666666666665554455555


Q ss_pred             CCCCCCEEEecCCCCCCccccccCCCCCCcEEEcccCCCcccc-hhhhccCCcCEEeccCCCC
Q 037308          221 KLKSLGVLNLGGCSNLQRLPECLGQLSSPIILNLAKTNVERIP-ESIIQLFVLRYLLLSYSER  282 (321)
Q Consensus       221 ~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~l~-~~l~~l~~L~~L~l~~n~~  282 (321)
                      ++++|+.+++++|.+.+..|..|..+++|+.|++++|.++.++ ..+..+++|++|++++|+.
T Consensus       175 ~l~~L~~l~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~i~~~~~~~~~~~~~L~~L~l~~N~l  237 (284)
T d1ozna_         175 GLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPW  237 (284)
T ss_dssp             TCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCE
T ss_pred             cccccchhhhhhccccccChhHhhhhhhcccccccccccccccccccccccccCEEEecCCCC
Confidence            6666666666666555555556666666666666666666444 3455566666666666533

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.82  E-value=8.1e-20  Score=156.52  Aligned_cols=199  Identities=21%  Similarity=0.214  Sum_probs=165.3

Q ss_pred             CcccEEEecCCCCCCCCCc-C-CcCceeEEeccCCcccccccCC-CCCCChHhHHhh-ccccccccCCCCCCCCCCCCcc
Q 037308           58 AEVKYFHWHGYPLKSLPSN-L-SAEKLVFLKVPYSDIEQLWNGE-KHYSNLNQIINA-TCNKLIAKTPNPTLMPHLNKLV  133 (321)
Q Consensus        58 ~~L~~l~l~~~~l~~~~~~-~-~l~~L~~L~l~~~~l~~~~~~~-~~l~~L~~~l~l-~~~~l~~~~~~~~~~~~l~~L~  133 (321)
                      +.+++|++++|.++.+|.. + ++++|++|++++|.+..+.... ...+.+.. +.. ..+.+. .++ +..+.++++|+
T Consensus        32 ~~~~~L~Ls~N~i~~i~~~~f~~l~~L~~L~ls~n~l~~i~~~~~~~~~~~~~-l~~~~~~~~~-~l~-~~~~~~l~~L~  108 (284)
T d1ozna_          32 AASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQ-LDLSDNAQLR-SVD-PATFHGLGRLH  108 (284)
T ss_dssp             TTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCE-EECCSCTTCC-CCC-TTTTTTCTTCC
T ss_pred             CCCCEEECcCCcCCCCCHHHhhccccccccccccccccccccccccccccccc-cccccccccc-ccc-chhhcccccCC
Confidence            6789999999999988875 4 7999999999999998875533 44555655 544 566666 554 23789999999


Q ss_pred             EEEccCCCCCcccCccccCcccCcEEecCCCCCccccccc---ccCCccEEEeccccccccCh-hhhccCCCCeEecccC
Q 037308          134 ILNLRGSKSLKSLPSGIFNLEFLTKLDLSGCSKLKRLLEI---SSGNINWLFLRETAIEELPS-SIERLLRLGHLDLSDC  209 (321)
Q Consensus       134 ~L~l~~n~~~~~~p~~l~~l~~L~~L~l~~~~~~~~~~~~---~~~~L~~L~l~~~~i~~l~~-~~~~l~~L~~L~l~~n  209 (321)
                      +|++++|.+....+..+...+.|+.+++++|.. +.++..   ...+|+.|++++|.++.++. .+..+++|+++++++|
T Consensus       109 ~L~l~~n~~~~~~~~~~~~~~~L~~l~l~~N~l-~~i~~~~f~~~~~L~~L~l~~N~l~~l~~~~f~~l~~L~~l~l~~N  187 (284)
T d1ozna_         109 TLHLDRCGLQELGPGLFRGLAALQYLYLQDNAL-QALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQN  187 (284)
T ss_dssp             EEECTTSCCCCCCTTTTTTCTTCCEEECCSSCC-CCCCTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred             EEecCCcccccccccccchhcccchhhhccccc-cccChhHhccccchhhcccccCcccccchhhhccccccchhhhhhc
Confidence            999999986555566677899999999999764 444432   46789999999999999864 5788999999999999


Q ss_pred             cccccccccccCCCCCCEEEecCCCCCCccccccCCCCCCcEEEcccCCCc
Q 037308          210 KRLKSLPSSLFKLKSLGVLNLGGCSNLQRLPECLGQLSSPIILNLAKTNVE  260 (321)
Q Consensus       210 ~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~  260 (321)
                      .+.+..|..+..+++|++|++++|.+.+..+..+..+++|+.|++++|.++
T Consensus       188 ~l~~i~~~~f~~l~~L~~L~l~~N~i~~~~~~~~~~~~~L~~L~l~~N~l~  238 (284)
T d1ozna_         188 RVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWV  238 (284)
T ss_dssp             CCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEE
T ss_pred             cccccChhHhhhhhhcccccccccccccccccccccccccCEEEecCCCCC
Confidence            999988999999999999999999999888889999999999999999988

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.82  E-value=2.2e-19  Score=152.30  Aligned_cols=200  Identities=18%  Similarity=0.119  Sum_probs=165.9

Q ss_pred             CcCceeEEeccCCcccccccCCCCCCChHhHHhhccccccccCCCCCCCCCCCCccEEEccCCCCCcccCccccCcccCc
Q 037308           78 SAEKLVFLKVPYSDIEQLWNGEKHYSNLNQIINATCNKLIAKTPNPTLMPHLNKLVILNLRGSKSLKSLPSGIFNLEFLT  157 (321)
Q Consensus        78 ~l~~L~~L~l~~~~l~~~~~~~~~l~~L~~~l~l~~~~l~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~l~~l~~L~  157 (321)
                      ....+.+++.++++++.+|.++.  ++++. |+++.|.++ .++. ..|..+++|++|++++|.+ ..+|. +..+++|+
T Consensus         8 ~~~~~~~v~C~~~~L~~iP~~lp--~~l~~-L~Ls~N~i~-~l~~-~~f~~l~~L~~L~L~~N~l-~~l~~-~~~l~~L~   80 (266)
T d1p9ag_           8 KVASHLEVNCDKRNLTALPPDLP--KDTTI-LHLSENLLY-TFSL-ATLMPYTRLTQLNLDRAEL-TKLQV-DGTLPVLG   80 (266)
T ss_dssp             CSTTCCEEECTTSCCSSCCSCCC--TTCCE-EECTTSCCS-EEEG-GGGTTCTTCCEEECTTSCC-CEEEC-CSCCTTCC
T ss_pred             ccCCCeEEEccCCCCCeeCcCcC--cCCCE-EECcCCcCC-CcCH-HHhhccccccccccccccc-ccccc-cccccccc
Confidence            34556677899999999887653  46788 999999998 6652 2688999999999999984 45664 67899999


Q ss_pred             EEecCCCCCccccccc--ccCCccEEEeccccccccCh-hhhccCCCCeEecccCcccccccccccCCCCCCEEEecCCC
Q 037308          158 KLDLSGCSKLKRLLEI--SSGNINWLFLRETAIEELPS-SIERLLRLGHLDLSDCKRLKSLPSSLFKLKSLGVLNLGGCS  234 (321)
Q Consensus       158 ~L~l~~~~~~~~~~~~--~~~~L~~L~l~~~~i~~l~~-~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~~~  234 (321)
                      +|++++|.... .+..  .+++|+.|+++++.+.+++. .+..+.++++|++++|.+....+..+..+++++.+++++|+
T Consensus        81 ~L~Ls~N~l~~-~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~l~~L~l~~n~l~~l~~~~~~~l~~l~~l~l~~N~  159 (266)
T d1p9ag_          81 TLDLSHNQLQS-LPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNN  159 (266)
T ss_dssp             EEECCSSCCSS-CCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSC
T ss_pred             ccccccccccc-cccccccccccccccccccccceeeccccccccccccccccccccceeccccccccccchhccccccc
Confidence            99999976433 3332  47899999999999998764 46788899999999999887777778889999999999999


Q ss_pred             CCCccccccCCCCCCcEEEcccCCCcccchhhhccCCcCEEeccCCCCccc
Q 037308          235 NLQRLPECLGQLSSPIILNLAKTNVERIPESIIQLFVLRYLLLSYSERIQS  285 (321)
Q Consensus       235 ~~~~~~~~~~~~~~L~~L~l~~n~l~~l~~~l~~l~~L~~L~l~~n~~l~~  285 (321)
                      +.+..+..+..+++|+.|++++|+++.+|+.+..+++|+.|++++|+.-.+
T Consensus       160 l~~~~~~~~~~l~~L~~L~Ls~N~L~~lp~~~~~~~~L~~L~L~~Np~~Cd  210 (266)
T d1p9ag_         160 LTELPAGLLNGLENLDTLLLQENSLYTIPKGFFGSHLLPFAFLHGNPWLCN  210 (266)
T ss_dssp             CSCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCCCSEEECCSCCBCCS
T ss_pred             ccccCccccccccccceeecccCCCcccChhHCCCCCCCEEEecCCCCCCC
Confidence            888777889999999999999999999998888899999999999976543

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.79  E-value=2.4e-19  Score=148.43  Aligned_cols=187  Identities=18%  Similarity=0.241  Sum_probs=115.5

Q ss_pred             CcCceeEEeccCCcccccccCCCCCCChHhHHhhccccccccCCCCCCCCCCCCccEEEccCCCCCcccCccccCcccCc
Q 037308           78 SAEKLVFLKVPYSDIEQLWNGEKHYSNLNQIINATCNKLIAKTPNPTLMPHLNKLVILNLRGSKSLKSLPSGIFNLEFLT  157 (321)
Q Consensus        78 ~l~~L~~L~l~~~~l~~~~~~~~~l~~L~~~l~l~~~~l~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~l~~l~~L~  157 (321)
                      .+.+|++|++.+|.++++ .++..+++|+. +++++|.+. .+.   .+..+++++++++++|. ...++. +..+++|+
T Consensus        39 ~l~~L~~L~l~~~~i~~l-~~l~~l~~L~~-L~ls~n~i~-~~~---~l~~l~~l~~l~~~~n~-~~~i~~-l~~l~~L~  110 (227)
T d1h6ua2          39 DLDGITTLSAFGTGVTTI-EGVQYLNNLIG-LELKDNQIT-DLA---PLKNLTKITELELSGNP-LKNVSA-IAGLQSIK  110 (227)
T ss_dssp             HHHTCCEEECTTSCCCCC-TTGGGCTTCCE-EECCSSCCC-CCG---GGTTCCSCCEEECCSCC-CSCCGG-GTTCTTCC
T ss_pred             HcCCcCEEECCCCCCCcc-hhHhcCCCCcE-eecCCceee-ccc---ccccccccccccccccc-cccccc-cccccccc
Confidence            344455555555554443 33444455544 555444444 332   35566677777777665 334443 55677777


Q ss_pred             EEecCCCCCcccccccccCCccEEEeccccccccChhhhccCCCCeEecccCcccccccccccCCCCCCEEEecCCCCCC
Q 037308          158 KLDLSGCSKLKRLLEISSGNINWLFLRETAIEELPSSIERLLRLGHLDLSDCKRLKSLPSSLFKLKSLGVLNLGGCSNLQ  237 (321)
Q Consensus       158 ~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~i~~l~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~~~~~~  237 (321)
                      .++++.|......+....+.+..+.++.+.+..... +..+++|++|++++|.+.+..  .++++++|+.|++++|.+.+
T Consensus       111 ~l~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~-~~~~~~L~~L~l~~n~~~~~~--~l~~l~~L~~L~Ls~n~l~~  187 (227)
T d1h6ua2         111 TLDLTSTQITDVTPLAGLSNLQVLYLDLNQITNISP-LAGLTNLQYLSIGNAQVSDLT--PLANLSKLTTLKADDNKISD  187 (227)
T ss_dssp             EEECTTSCCCCCGGGTTCTTCCEEECCSSCCCCCGG-GGGCTTCCEEECCSSCCCCCG--GGTTCTTCCEEECCSSCCCC
T ss_pred             ccccccccccccchhccccchhhhhchhhhhchhhh-hccccccccccccccccccch--hhcccccceecccCCCccCC
Confidence            777766554333222245566667776666655432 566777888888887755432  26778888888888876544


Q ss_pred             ccccccCCCCCCcEEEcccCCCcccchhhhccCCcCEEecc
Q 037308          238 RLPECLGQLSSPIILNLAKTNVERIPESIIQLFVLRYLLLS  278 (321)
Q Consensus       238 ~~~~~~~~~~~L~~L~l~~n~l~~l~~~l~~l~~L~~L~l~  278 (321)
                       ++ .++.+++|+.|++++|++++++. +..+++|+.|+++
T Consensus       188 -l~-~l~~l~~L~~L~Ls~N~lt~i~~-l~~l~~L~~L~ls  225 (227)
T d1h6ua2         188 -IS-PLASLPNLIEVHLKNNQISDVSP-LANTSNLFIVTLT  225 (227)
T ss_dssp             -CG-GGGGCTTCCEEECTTSCCCBCGG-GTTCTTCCEEEEE
T ss_pred             -Ch-hhcCCCCCCEEECcCCcCCCCcc-cccCCCCCEEEee
Confidence             33 36778888888888888887763 6778888888775

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.75  E-value=1.8e-17  Score=137.03  Aligned_cols=186  Identities=17%  Similarity=0.188  Sum_probs=146.0

Q ss_pred             CcccEEEecCCCCCCCCCcCCcCceeEEeccCCcccccccCCCCCCChHhHHhhccccccccCCCCCCCCCCCCccEEEc
Q 037308           58 AEVKYFHWHGYPLKSLPSNLSAEKLVFLKVPYSDIEQLWNGEKHYSNLNQIINATCNKLIAKTPNPTLMPHLNKLVILNL  137 (321)
Q Consensus        58 ~~L~~l~l~~~~l~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~l~~L~~~l~l~~~~l~~~~~~~~~~~~l~~L~~L~l  137 (321)
                      .+|+.+++.+|.++.+++...+++|+.|++++|.+..+. .+..+++++. ++++.+.++ .++   .+.+++.|+.+++
T Consensus        41 ~~L~~L~l~~~~i~~l~~l~~l~~L~~L~ls~n~i~~~~-~l~~l~~l~~-l~~~~n~~~-~i~---~l~~l~~L~~l~l  114 (227)
T d1h6ua2          41 DGITTLSAFGTGVTTIEGVQYLNNLIGLELKDNQITDLA-PLKNLTKITE-LELSGNPLK-NVS---AIAGLQSIKTLDL  114 (227)
T ss_dssp             HTCCEEECTTSCCCCCTTGGGCTTCCEEECCSSCCCCCG-GGTTCCSCCE-EECCSCCCS-CCG---GGTTCTTCCEEEC
T ss_pred             CCcCEEECCCCCCCcchhHhcCCCCcEeecCCceeeccc-cccccccccc-ccccccccc-ccc---ccccccccccccc
Confidence            788888888888888865458888888888888887754 3677788887 888888777 665   5778899999999


Q ss_pred             cCCCCCcccCccccCcccCcEEecCCCCCcccccccccCCccEEEeccccccccChhhhccCCCCeEecccCcccccccc
Q 037308          138 RGSKSLKSLPSGIFNLEFLTKLDLSGCSKLKRLLEISSGNINWLFLRETAIEELPSSIERLLRLGHLDLSDCKRLKSLPS  217 (321)
Q Consensus       138 ~~n~~~~~~p~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~i~~l~~~~~~l~~L~~L~l~~n~~~~~~~~  217 (321)
                      +++.... .++ +...+.++.+.++.+......+....++|+.|++++|.+.+.+. +.++++|++|++++|++.+ ++.
T Consensus       115 ~~~~~~~-~~~-~~~~~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~-l~~l~~L~~L~Ls~n~l~~-l~~  190 (227)
T d1h6ua2         115 TSTQITD-VTP-LAGLSNLQVLYLDLNQITNISPLAGLTNLQYLSIGNAQVSDLTP-LANLSKLTTLKADDNKISD-ISP  190 (227)
T ss_dssp             TTSCCCC-CGG-GTTCTTCCEEECCSSCCCCCGGGGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCC-CGG
T ss_pred             ccccccc-cch-hccccchhhhhchhhhhchhhhhccccccccccccccccccchh-hcccccceecccCCCccCC-Chh
Confidence            9887433 332 66788899999988765444443457889999999998887664 7889999999999998765 433


Q ss_pred             cccCCCCCCEEEecCCCCCCccccccCCCCCCcEEEccc
Q 037308          218 SLFKLKSLGVLNLGGCSNLQRLPECLGQLSSPIILNLAK  256 (321)
Q Consensus       218 ~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~  256 (321)
                       ++++++|++|++++|++.+ ++ .+..+++|+.|++++
T Consensus       191 -l~~l~~L~~L~Ls~N~lt~-i~-~l~~l~~L~~L~lsn  226 (227)
T d1h6ua2         191 -LASLPNLIEVHLKNNQISD-VS-PLANTSNLFIVTLTN  226 (227)
T ss_dssp             -GGGCTTCCEEECTTSCCCB-CG-GGTTCTTCCEEEEEE
T ss_pred             -hcCCCCCCEEECcCCcCCC-Cc-ccccCCCCCEEEeeC
Confidence             7899999999999987654 43 488999999999874

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=99.70  E-value=8.3e-16  Score=134.42  Aligned_cols=257  Identities=22%  Similarity=0.215  Sum_probs=153.4

Q ss_pred             eecCchhhhccChhhhcCCCCceEEEEeecCCCCccccceeccCCCCcCcccEEEecCCCCCCCCCcCCcCceeEEeccC
Q 037308           10 LDMSTVKEIRLNLSTFTKMPKLRFLKFYSSSFNGENKCKVSYLQDPRFAEVKYFHWHGYPLKSLPSNLSAEKLVFLKVPY   89 (321)
Q Consensus        10 l~~~~~~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~l~~~~L~~l~l~~~~l~~~~~~~~l~~L~~L~l~~   89 (321)
                      ||++++....++ +   ..++|++|++++|+++.       .+..  ..+|+.|++.+|.+..++..  .+.|++|++++
T Consensus        43 LdLs~~~L~~lp-~---~~~~L~~L~Ls~N~l~~-------lp~~--~~~L~~L~l~~n~l~~l~~l--p~~L~~L~L~~  107 (353)
T d1jl5a_          43 LELNNLGLSSLP-E---LPPHLESLVASCNSLTE-------LPEL--PQSLKSLLVDNNNLKALSDL--PPLLEYLGVSN  107 (353)
T ss_dssp             EECTTSCCSCCC-S---CCTTCSEEECCSSCCSS-------CCCC--CTTCCEEECCSSCCSCCCSC--CTTCCEEECCS
T ss_pred             EEeCCCCCCCCC-C---CCCCCCEEECCCCCCcc-------cccc--hhhhhhhhhhhcccchhhhh--ccccccccccc
Confidence            456666544443 1   24789999999987551       1111  15777777777777766543  34577888888


Q ss_pred             CcccccccCCCCCCChHhHHhhccccccccCCC-----------------CCCCCCCCCccEEEccCCCCCc--------
Q 037308           90 SDIEQLWNGEKHYSNLNQIINATCNKLIAKTPN-----------------PTLMPHLNKLVILNLRGSKSLK--------  144 (321)
Q Consensus        90 ~~l~~~~~~~~~l~~L~~~l~l~~~~l~~~~~~-----------------~~~~~~l~~L~~L~l~~n~~~~--------  144 (321)
                      |.+..++. ...+++|+. ++++++.+. ..+.                 ...+..++.++.+++++|....        
T Consensus       108 n~l~~lp~-~~~l~~L~~-L~l~~~~~~-~~~~~~~~l~~l~~~~~~~~~~~~l~~l~~l~~L~l~~n~~~~~~~~~~~~  184 (353)
T d1jl5a_         108 NQLEKLPE-LQNSSFLKI-IDVDNNSLK-KLPDLPPSLEFIAAGNNQLEELPELQNLPFLTAIYADNNSLKKLPDLPLSL  184 (353)
T ss_dssp             SCCSSCCC-CTTCTTCCE-EECCSSCCS-CCCCCCTTCCEEECCSSCCSSCCCCTTCTTCCEEECCSSCCSSCCCCCTTC
T ss_pred             cccccccc-hhhhcccee-ecccccccc-ccccccccccchhhccccccccccccccccceecccccccccccccccccc
Confidence            87777653 456677777 776666554 2221                 0134445566666666554221        


Q ss_pred             -----------ccCccccCcccCcEEecCCCCCcccccccccCCccEEEeccccccccChhhhccCCCCeEecccCcccc
Q 037308          145 -----------SLPSGIFNLEFLTKLDLSGCSKLKRLLEISSGNINWLFLRETAIEELPSSIERLLRLGHLDLSDCKRLK  213 (321)
Q Consensus       145 -----------~~p~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~i~~l~~~~~~l~~L~~L~l~~n~~~~  213 (321)
                                 .++. +..++.|+.++++.|.. ...+.. ..++..+.+..+.+...+...   ..+...++..+.+.+
T Consensus       185 ~~l~~~~~~~~~~~~-~~~l~~L~~l~l~~n~~-~~~~~~-~~~l~~~~~~~~~~~~~~~~~---~~l~~~~~~~~~~~~  258 (353)
T d1jl5a_         185 ESIVAGNNILEELPE-LQNLPFLTTIYADNNLL-KTLPDL-PPSLEALNVRDNYLTDLPELP---QSLTFLDVSENIFSG  258 (353)
T ss_dssp             CEEECCSSCCSSCCC-CTTCTTCCEEECCSSCC-SSCCSC-CTTCCEEECCSSCCSCCCCCC---TTCCEEECCSSCCSE
T ss_pred             ccccccccccccccc-ccccccccccccccccc-cccccc-ccccccccccccccccccccc---ccccccccccccccc
Confidence                       1111 33455666666665432 222322 445555555555554433211   122333332222111


Q ss_pred             ----------------cccccccCCCCCCEEEecCCCCCCccccccCCCCCCcEEEcccCCCcccchhhhccCCcCEEec
Q 037308          214 ----------------SLPSSLFKLKSLGVLNLGGCSNLQRLPECLGQLSSPIILNLAKTNVERIPESIIQLFVLRYLLL  277 (321)
Q Consensus       214 ----------------~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~l~~~l~~l~~L~~L~l  277 (321)
                                      .++.....+++|++|++++|.+. .+|.   .+++|+.|++++|+++++|+   .+++|++|++
T Consensus       259 l~~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~-~lp~---~~~~L~~L~L~~N~L~~l~~---~~~~L~~L~L  331 (353)
T d1jl5a_         259 LSELPPNLYYLNASSNEIRSLCDLPPSLEELNVSNNKLI-ELPA---LPPRLERLIASFNHLAEVPE---LPQNLKQLHV  331 (353)
T ss_dssp             ESCCCTTCCEEECCSSCCSEECCCCTTCCEEECCSSCCS-CCCC---CCTTCCEEECCSSCCSCCCC---CCTTCCEEEC
T ss_pred             cccccchhcccccccCccccccccCCCCCEEECCCCccC-cccc---ccCCCCEEECCCCcCCcccc---ccCCCCEEEC
Confidence                            11122234678999999998765 4554   46789999999999999885   3568999999


Q ss_pred             cCCCCccccc-Ccccccccccc
Q 037308          278 SYSERIQSVS-LPLARGILEDT  298 (321)
Q Consensus       278 ~~n~~l~~~~-~~~~l~~l~~~  298 (321)
                      ++| .++++| .|.+++.|.+.
T Consensus       332 ~~N-~L~~lp~~~~~L~~L~~~  352 (353)
T d1jl5a_         332 EYN-PLREFPDIPESVEDLRMN  352 (353)
T ss_dssp             CSS-CCSSCCCCCTTCCEEECC
T ss_pred             cCC-cCCCCCccccccCeeECc
Confidence            999 599999 88889888764

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.69  E-value=9.3e-17  Score=129.92  Aligned_cols=162  Identities=25%  Similarity=0.333  Sum_probs=91.9

Q ss_pred             CcCceeEEeccCCcccccccCCCCCCChHhHHhhccccccccCCCCCCCCCCCCccEEEccCCCCCcccCccccCcccCc
Q 037308           78 SAEKLVFLKVPYSDIEQLWNGEKHYSNLNQIINATCNKLIAKTPNPTLMPHLNKLVILNLRGSKSLKSLPSGIFNLEFLT  157 (321)
Q Consensus        78 ~l~~L~~L~l~~~~l~~~~~~~~~l~~L~~~l~l~~~~l~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~l~~l~~L~  157 (321)
                      .++++++|+++++.+.++ .++..+++|+. +++++|.++ .++   .+.++++|++|++++|. ...+++ +++++.|+
T Consensus        38 ~l~~l~~L~l~~~~i~~l-~~l~~l~nL~~-L~Ls~N~l~-~~~---~l~~l~~L~~L~l~~n~-~~~~~~-l~~l~~L~  109 (199)
T d2omxa2          38 DLDQVTTLQADRLGIKSI-DGVEYLNNLTQ-INFSNNQLT-DIT---PLKNLTKLVDILMNNNQ-IADITP-LANLTNLT  109 (199)
T ss_dssp             HHTTCCEEECTTSCCCCC-TTGGGCTTCCE-EECCSSCCC-CCG---GGTTCTTCCEEECCSSC-CCCCGG-GTTCTTCS
T ss_pred             HhcCCCEEECCCCCCCCc-cccccCCCcCc-Ccccccccc-Ccc---cccCCcccccccccccc-cccccc-cccccccc
Confidence            455555666655555442 22233333333 333333333 222   23445555555555554 222232 44444455


Q ss_pred             EEecCCCCCcccccccccCCccEEEeccccccccChhhhccCCCCeEecccCcccccccccccCCCCCCEEEecCCCCCC
Q 037308          158 KLDLSGCSKLKRLLEISSGNINWLFLRETAIEELPSSIERLLRLGHLDLSDCKRLKSLPSSLFKLKSLGVLNLGGCSNLQ  237 (321)
Q Consensus       158 ~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~i~~l~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~~~~~~  237 (321)
                      .+++++                      +.+..++ .+..+++|+.|++++|.+.. ++ .+..+++|+.|++.+|.+.+
T Consensus       110 ~L~l~~----------------------~~~~~~~-~~~~l~~L~~L~l~~n~l~~-~~-~l~~~~~L~~L~l~~n~l~~  164 (199)
T d2omxa2         110 GLTLFN----------------------NQITDID-PLKNLTNLNRLELSSNTISD-IS-ALSGLTSLQQLNFSSNQVTD  164 (199)
T ss_dssp             EEECCS----------------------SCCCCCG-GGTTCTTCSEEECCSSCCCC-CG-GGTTCTTCSEEECCSSCCCC
T ss_pred             cccccc----------------------ccccccc-ccchhhhhHHhhhhhhhhcc-cc-cccccccccccccccccccC
Confidence            544444                      4444333 25566778888888777543 22 36677888888888876654


Q ss_pred             ccccccCCCCCCcEEEcccCCCcccchhhhccCCcCEE
Q 037308          238 RLPECLGQLSSPIILNLAKTNVERIPESIIQLFVLRYL  275 (321)
Q Consensus       238 ~~~~~~~~~~~L~~L~l~~n~l~~l~~~l~~l~~L~~L  275 (321)
                      .  ..++++++|+.|++++|++++++ .++.+++|++|
T Consensus       165 l--~~l~~l~~L~~L~ls~N~i~~i~-~l~~L~~L~~L  199 (199)
T d2omxa2         165 L--KPLANLTTLERLDISSNKVSDIS-VLAKLTNLESL  199 (199)
T ss_dssp             C--GGGTTCTTCCEEECCSSCCCCCG-GGGGCTTCSEE
T ss_pred             C--ccccCCCCCCEEECCCCCCCCCc-cccCCCCCCcC
Confidence            3  34778888888888888888875 46778888765

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.69  E-value=1.6e-16  Score=129.67  Aligned_cols=165  Identities=24%  Similarity=0.238  Sum_probs=97.7

Q ss_pred             cCceeEEeccCCcccccccCCCCCCChHhHHhhccccccccCCCCCCCCCCCCccEEEccCCCCCcccCccccCcccCcE
Q 037308           79 AEKLVFLKVPYSDIEQLWNGEKHYSNLNQIINATCNKLIAKTPNPTLMPHLNKLVILNLRGSKSLKSLPSGIFNLEFLTK  158 (321)
Q Consensus        79 l~~L~~L~l~~~~l~~~~~~~~~l~~L~~~l~l~~~~l~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~l~~l~~L~~  158 (321)
                      +.+|++|++++|.++.+ .++..+++|++ ++++.|.++ .++   .+..+++|++|++++|. +..+|. +..+++|+.
T Consensus        45 L~~L~~L~l~~~~i~~l-~~l~~l~~L~~-L~L~~n~i~-~l~---~~~~l~~L~~L~l~~n~-i~~l~~-l~~l~~L~~  116 (210)
T d1h6ta2          45 LNSIDQIIANNSDIKSV-QGIQYLPNVTK-LFLNGNKLT-DIK---PLANLKNLGWLFLDENK-VKDLSS-LKDLKKLKS  116 (210)
T ss_dssp             HHTCCEEECTTSCCCCC-TTGGGCTTCCE-EECCSSCCC-CCG---GGTTCTTCCEEECCSSC-CCCGGG-GTTCTTCCE
T ss_pred             hcCccEEECcCCCCCCc-hhHhhCCCCCE-EeCCCcccc-Ccc---ccccCcccccccccccc-cccccc-ccccccccc
Confidence            34444444444444443 23344444444 444444444 333   24456666666666665 333443 556666666


Q ss_pred             EecCCCCCcccccccccCCccEEEeccccccccChhhhccCCCCeEecccCcccccccccccCCCCCCEEEecCCCCCCc
Q 037308          159 LDLSGCSKLKRLLEISSGNINWLFLRETAIEELPSSIERLLRLGHLDLSDCKRLKSLPSSLFKLKSLGVLNLGGCSNLQR  238 (321)
Q Consensus       159 L~l~~~~~~~~~~~~~~~~L~~L~l~~~~i~~l~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~~~~~~~  238 (321)
                      +++++|......+...++.++.++++.|.+++.+ .+..+++|+++++++|.+.+. +. +.++++|+.|++++|.+. .
T Consensus       117 L~l~~~~~~~~~~l~~l~~l~~l~~~~n~l~~~~-~~~~l~~L~~l~l~~n~l~~i-~~-l~~l~~L~~L~Ls~N~i~-~  192 (210)
T d1h6ta2         117 LSLEHNGISDINGLVHLPQLESLYLGNNKITDIT-VLSRLTKLDTLSLEDNQISDI-VP-LAGLTKLQNLYLSKNHIS-D  192 (210)
T ss_dssp             EECTTSCCCCCGGGGGCTTCCEEECCSSCCCCCG-GGGGCTTCSEEECCSSCCCCC-GG-GTTCTTCCEEECCSSCCC-B
T ss_pred             cccccccccccccccccccccccccccccccccc-ccccccccccccccccccccc-cc-ccCCCCCCEEECCCCCCC-C
Confidence            6666654322111113566677777777766654 356677888888888876543 32 678888888888887654 4


Q ss_pred             cccccCCCCCCcEEEccc
Q 037308          239 LPECLGQLSSPIILNLAK  256 (321)
Q Consensus       239 ~~~~~~~~~~L~~L~l~~  256 (321)
                      ++ .+.++++|+.|++++
T Consensus       193 l~-~l~~l~~L~~L~Ls~  209 (210)
T d1h6ta2         193 LR-ALAGLKNLDVLELFS  209 (210)
T ss_dssp             CG-GGTTCTTCSEEEEEE
T ss_pred             Ch-hhcCCCCCCEEEccC
Confidence            44 578888888888764

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.69  E-value=1.1e-16  Score=130.68  Aligned_cols=163  Identities=23%  Similarity=0.224  Sum_probs=118.1

Q ss_pred             CChHhHHhhccccccccCCCCCCCCCCCCccEEEccCCCCCcccCccccCcccCcEEecCCCCCccccccc-ccCCccEE
Q 037308          103 SNLNQIINATCNKLIAKTPNPTLMPHLNKLVILNLRGSKSLKSLPSGIFNLEFLTKLDLSGCSKLKRLLEI-SSGNINWL  181 (321)
Q Consensus       103 ~~L~~~l~l~~~~l~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~l~~l~~L~~L~l~~~~~~~~~~~~-~~~~L~~L  181 (321)
                      ..++. ++++.+.++ .++   .+..+++|++|++++|.+. .+++ ++.+++|+.|++++|. ++.++.. .+++|+.|
T Consensus        46 ~~L~~-L~l~~~~i~-~l~---~l~~l~~L~~L~L~~n~i~-~l~~-~~~l~~L~~L~l~~n~-i~~l~~l~~l~~L~~L  117 (210)
T d1h6ta2          46 NSIDQ-IIANNSDIK-SVQ---GIQYLPNVTKLFLNGNKLT-DIKP-LANLKNLGWLFLDENK-VKDLSSLKDLKKLKSL  117 (210)
T ss_dssp             HTCCE-EECTTSCCC-CCT---TGGGCTTCCEEECCSSCCC-CCGG-GTTCTTCCEEECCSSC-CCCGGGGTTCTTCCEE
T ss_pred             cCccE-EECcCCCCC-Cch---hHhhCCCCCEEeCCCcccc-Cccc-cccCcccccccccccc-cccccccccccccccc
Confidence            34555 777777776 554   4677888888888888744 4443 6678888888888865 4444433 46788888


Q ss_pred             EeccccccccChhhhccCCCCeEecccCcccccccccccCCCCCCEEEecCCCCCCccccccCCCCCCcEEEcccCCCcc
Q 037308          182 FLRETAIEELPSSIERLLRLGHLDLSDCKRLKSLPSSLFKLKSLGVLNLGGCSNLQRLPECLGQLSSPIILNLAKTNVER  261 (321)
Q Consensus       182 ~l~~~~i~~l~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~  261 (321)
                      ++.+|.+..++ .+.+++.++.+++++|.+.+.  ..+..+++|+.+++++|.+.+ ++ .+..+++|+.|++++|++++
T Consensus       118 ~l~~~~~~~~~-~l~~l~~l~~l~~~~n~l~~~--~~~~~l~~L~~l~l~~n~l~~-i~-~l~~l~~L~~L~Ls~N~i~~  192 (210)
T d1h6ta2         118 SLEHNGISDIN-GLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISD-IV-PLAGLTKLQNLYLSKNHISD  192 (210)
T ss_dssp             ECTTSCCCCCG-GGGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCC-CG-GGTTCTTCCEEECCSSCCCB
T ss_pred             ccccccccccc-ccccccccccccccccccccc--ccccccccccccccccccccc-cc-cccCCCCCCEEECCCCCCCC
Confidence            88888877765 367778888888888776542  345678888888888877654 32 37788888888888888888


Q ss_pred             cchhhhccCCcCEEeccC
Q 037308          262 IPESIIQLFVLRYLLLSY  279 (321)
Q Consensus       262 l~~~l~~l~~L~~L~l~~  279 (321)
                      ++ .+..+++|++|++++
T Consensus       193 l~-~l~~l~~L~~L~Ls~  209 (210)
T d1h6ta2         193 LR-ALAGLKNLDVLELFS  209 (210)
T ss_dssp             CG-GGTTCTTCSEEEEEE
T ss_pred             Ch-hhcCCCCCCEEEccC
Confidence            76 477888888888764

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=99.68  E-value=2.2e-15  Score=131.68  Aligned_cols=246  Identities=16%  Similarity=0.117  Sum_probs=162.9

Q ss_pred             CCceEEEEeecCCCCccccceeccCCCCcCcccEEEecCCCCCCCCCcCCcCceeEEeccCCcccccccCCCCCCChHhH
Q 037308           29 PKLRFLKFYSSSFNGENKCKVSYLQDPRFAEVKYFHWHGYPLKSLPSNLSAEKLVFLKVPYSDIEQLWNGEKHYSNLNQI  108 (321)
Q Consensus        29 ~~L~~L~l~~n~~~~~~~~~~~~~~~l~~~~L~~l~l~~~~l~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~l~~L~~~  108 (321)
                      .++++|+++++.++.       .|+.  .++|++|++++|.++.+|..  +.+|+.|++++|+++.+...   .+.|+. 
T Consensus        38 ~~l~~LdLs~~~L~~-------lp~~--~~~L~~L~Ls~N~l~~lp~~--~~~L~~L~l~~n~l~~l~~l---p~~L~~-  102 (353)
T d1jl5a_          38 RQAHELELNNLGLSS-------LPEL--PPHLESLVASCNSLTELPEL--PQSLKSLLVDNNNLKALSDL---PPLLEY-  102 (353)
T ss_dssp             HTCSEEECTTSCCSC-------CCSC--CTTCSEEECCSSCCSSCCCC--CTTCCEEECCSSCCSCCCSC---CTTCCE-
T ss_pred             cCCCEEEeCCCCCCC-------CCCC--CCCCCEEECCCCCCcccccc--hhhhhhhhhhhcccchhhhh---cccccc-
Confidence            368999999987541       1211  17899999999999999875  56899999999998876431   234777 


Q ss_pred             HhhccccccccCCCCCCCCCCCCccEEEccCCCCCcccCccccCcccCcEEecCCCCCcccccccccCCccEEEeccccc
Q 037308          109 INATCNKLIAKTPNPTLMPHLNKLVILNLRGSKSLKSLPSGIFNLEFLTKLDLSGCSKLKRLLEISSGNINWLFLRETAI  188 (321)
Q Consensus       109 l~l~~~~l~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~i  188 (321)
                      +++++|.+. .+|   .+..+++|++|+++++.+ ...+.   ....+..+.+..+..........++.++.+++..+..
T Consensus       103 L~L~~n~l~-~lp---~~~~l~~L~~L~l~~~~~-~~~~~---~~~~l~~l~~~~~~~~~~~~l~~l~~l~~L~l~~n~~  174 (353)
T d1jl5a_         103 LGVSNNQLE-KLP---ELQNSSFLKIIDVDNNSL-KKLPD---LPPSLEFIAAGNNQLEELPELQNLPFLTAIYADNNSL  174 (353)
T ss_dssp             EECCSSCCS-SCC---CCTTCTTCCEEECCSSCC-SCCCC---CCTTCCEEECCSSCCSSCCCCTTCTTCCEEECCSSCC
T ss_pred             ccccccccc-ccc---chhhhccceeeccccccc-ccccc---ccccccchhhccccccccccccccccceecccccccc
Confidence            999999998 777   357889999999999874 34443   2455666666654332221111355666666666554


Q ss_pred             cccC-------------------hhhhccCCCCeEecccCccccccccccc-----------------CCCCCCEEEecC
Q 037308          189 EELP-------------------SSIERLLRLGHLDLSDCKRLKSLPSSLF-----------------KLKSLGVLNLGG  232 (321)
Q Consensus       189 ~~l~-------------------~~~~~l~~L~~L~l~~n~~~~~~~~~~~-----------------~l~~L~~L~l~~  232 (321)
                      ..++                   .....++.++.++++.|.... .+....                 ....+...++..
T Consensus       175 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~L~~l~l~~n~~~~-~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~  253 (353)
T d1jl5a_         175 KKLPDLPLSLESIVAGNNILEELPELQNLPFLTTIYADNNLLKT-LPDLPPSLEALNVRDNYLTDLPELPQSLTFLDVSE  253 (353)
T ss_dssp             SSCCCCCTTCCEEECCSSCCSSCCCCTTCTTCCEEECCSSCCSS-CCSCCTTCCEEECCSSCCSCCCCCCTTCCEEECCS
T ss_pred             cccccccccccccccccccccccccccccccccccccccccccc-ccccccccccccccccccccccccccccccccccc
Confidence            4321                   124456788899888876443 221111                 112233333332


Q ss_pred             CCCCC----------------ccccccCCCCCCcEEEcccCCCcccchhhhccCCcCEEeccCCCCccccc-Cccccccc
Q 037308          233 CSNLQ----------------RLPECLGQLSSPIILNLAKTNVERIPESIIQLFVLRYLLLSYSERIQSVS-LPLARGIL  295 (321)
Q Consensus       233 ~~~~~----------------~~~~~~~~~~~L~~L~l~~n~l~~l~~~l~~l~~L~~L~l~~n~~l~~~~-~~~~l~~l  295 (321)
                      +...+                .+......+++|++|++++|+++.+|.   .+++|++|++++| .|+.+| .+.+++.|
T Consensus       254 ~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~lp~---~~~~L~~L~L~~N-~L~~l~~~~~~L~~L  329 (353)
T d1jl5a_         254 NIFSGLSELPPNLYYLNASSNEIRSLCDLPPSLEELNVSNNKLIELPA---LPPRLERLIASFN-HLAEVPELPQNLKQL  329 (353)
T ss_dssp             SCCSEESCCCTTCCEEECCSSCCSEECCCCTTCCEEECCSSCCSCCCC---CCTTCCEEECCSS-CCSCCCCCCTTCCEE
T ss_pred             ccccccccccchhcccccccCccccccccCCCCCEEECCCCccCcccc---ccCCCCEEECCCC-cCCccccccCCCCEE
Confidence            21110                111122346789999999999999985   4689999999999 899998 88899999


Q ss_pred             cccccCc
Q 037308          296 EDTQRSP  302 (321)
Q Consensus       296 ~~~~~~~  302 (321)
                      ++.++.-
T Consensus       330 ~L~~N~L  336 (353)
T d1jl5a_         330 HVEYNPL  336 (353)
T ss_dssp             ECCSSCC
T ss_pred             ECcCCcC
Confidence            9888653

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.68  E-value=4.5e-16  Score=125.81  Aligned_cols=174  Identities=17%  Similarity=0.184  Sum_probs=134.1

Q ss_pred             HhhccccccccCCCCCCCCCCCCccEEEccCCCCCcccCccccCcccCcEEecCCCCCcccccccccCCccEEEeccccc
Q 037308          109 INATCNKLIAKTPNPTLMPHLNKLVILNLRGSKSLKSLPSGIFNLEFLTKLDLSGCSKLKRLLEISSGNINWLFLRETAI  188 (321)
Q Consensus       109 l~l~~~~l~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~i  188 (321)
                      ..++.+.+++..    ....+.++++|++++|. +..+++ ++.+++|++|++++|...+..+...+++|++|++++|.+
T Consensus        23 ~~l~~~~~~~~~----~~~~l~~l~~L~l~~~~-i~~l~~-l~~l~nL~~L~Ls~N~l~~~~~l~~l~~L~~L~l~~n~~   96 (199)
T d2omxa2          23 TVLGKTNVTDTV----SQTDLDQVTTLQADRLG-IKSIDG-VEYLNNLTQINFSNNQLTDITPLKNLTKLVDILMNNNQI   96 (199)
T ss_dssp             HHTTCSSTTSEE----CHHHHTTCCEEECTTSC-CCCCTT-GGGCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCC
T ss_pred             HHhCCCCCCCcc----CHHHhcCCCEEECCCCC-CCCccc-cccCCCcCcCccccccccCcccccCCccccccccccccc
Confidence            455566665222    23457789999999988 445554 788999999999997543332323578999999999999


Q ss_pred             cccChhhhccCCCCeEecccCcccccccccccCCCCCCEEEecCCCCCCccccccCCCCCCcEEEcccCCCcccchhhhc
Q 037308          189 EELPSSIERLLRLGHLDLSDCKRLKSLPSSLFKLKSLGVLNLGGCSNLQRLPECLGQLSSPIILNLAKTNVERIPESIIQ  268 (321)
Q Consensus       189 ~~l~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~l~~~l~~  268 (321)
                      ..++. +.+++.|+.+++++|.....  ..+..+++|+.|++++|.+.. + ..+..+++++.|++.+|+++.++ .++.
T Consensus        97 ~~~~~-l~~l~~L~~L~l~~~~~~~~--~~~~~l~~L~~L~l~~n~l~~-~-~~l~~~~~L~~L~l~~n~l~~l~-~l~~  170 (199)
T d2omxa2          97 ADITP-LANLTNLTGLTLFNNQITDI--DPLKNLTNLNRLELSSNTISD-I-SALSGLTSLQQLNFSSNQVTDLK-PLAN  170 (199)
T ss_dssp             CCCGG-GTTCTTCSEEECCSSCCCCC--GGGTTCTTCSEEECCSSCCCC-C-GGGTTCTTCSEEECCSSCCCCCG-GGTT
T ss_pred             ccccc-cccccccccccccccccccc--cccchhhhhHHhhhhhhhhcc-c-ccccccccccccccccccccCCc-cccC
Confidence            88874 78899999999999886653  347789999999999987643 3 46889999999999999999886 4889


Q ss_pred             cCCcCEEeccCCCCcccccCccccccc
Q 037308          269 LFVLRYLLLSYSERIQSVSLPLARGIL  295 (321)
Q Consensus       269 l~~L~~L~l~~n~~l~~~~~~~~l~~l  295 (321)
                      +++|++|++++| .+++++....+..|
T Consensus       171 l~~L~~L~ls~N-~i~~i~~l~~L~~L  196 (199)
T d2omxa2         171 LTTLERLDISSN-KVSDISVLAKLTNL  196 (199)
T ss_dssp             CTTCCEEECCSS-CCCCCGGGGGCTTC
T ss_pred             CCCCCEEECCCC-CCCCCccccCCCCC
Confidence            999999999999 78887633344433

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.67  E-value=4.1e-16  Score=129.80  Aligned_cols=220  Identities=19%  Similarity=0.239  Sum_probs=123.1

Q ss_pred             cEEEecCCCCCCCCCcCCcCceeEEeccCCccccccc-CCCCCCChHhHHhhccccccccCCCCCCCCCCCCccEEEccC
Q 037308           61 KYFHWHGYPLKSLPSNLSAEKLVFLKVPYSDIEQLWN-GEKHYSNLNQIINATCNKLIAKTPNPTLMPHLNKLVILNLRG  139 (321)
Q Consensus        61 ~~l~l~~~~l~~~~~~~~l~~L~~L~l~~~~l~~~~~-~~~~l~~L~~~l~l~~~~l~~~~~~~~~~~~l~~L~~L~l~~  139 (321)
                      +.++..+..++.+|..+ .+++++|++++|.++.++. .+..+++|+. ++++.|.+...++ +..|.+++.++++.+..
T Consensus        11 ~~i~c~~~~l~~iP~~l-~~~l~~L~Ls~n~i~~l~~~~f~~l~~L~~-L~ls~n~~~~~i~-~~~f~~l~~l~~l~~~~   87 (242)
T d1xwdc1          11 RVFLCQESKVTEIPSDL-PRNAIELRFVLTKLRVIQKGAFSGFGDLEK-IEISQNDVLEVIE-ADVFSNLPKLHEIRIEK   87 (242)
T ss_dssp             SEEEEESCSCSSCCSCS-CSCCSEEEEESCCCCEECTTTTTTCTTCCE-EEEESCTTCCEEC-SSSEESCTTCCEEEEEC
T ss_pred             CEEEEeCCCCCCcCCCC-CCCCCEEECcCCcCCccChhHhhccchhhh-hhhccccccceee-ccccccccccccccccc
Confidence            34555555555665543 1356666666666666554 2455666666 6666665542232 22456666677766654


Q ss_pred             -CCCCcccCccccCcccCcEEecCCCCCcccccccc---cCCccEEEeccccccccCh-hhhcc-CCCCeEecccCcccc
Q 037308          140 -SKSLKSLPSGIFNLEFLTKLDLSGCSKLKRLLEIS---SGNINWLFLRETAIEELPS-SIERL-LRLGHLDLSDCKRLK  213 (321)
Q Consensus       140 -n~~~~~~p~~l~~l~~L~~L~l~~~~~~~~~~~~~---~~~L~~L~l~~~~i~~l~~-~~~~l-~~L~~L~l~~n~~~~  213 (321)
                       +.+....+..|.++++|+++++++|......+...   +..+..+...++.+..++. .+..+ ..++.+++++|.+..
T Consensus        88 ~n~l~~~~~~~~~~l~~L~~l~l~~~~l~~~~~~~~~~~l~~l~~~~~~n~~l~~i~~~~~~~~~~~l~~L~l~~n~l~~  167 (242)
T d1xwdc1          88 ANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQE  167 (242)
T ss_dssp             CTTCCEECTTSEECCTTCCEEEEESCCCCSCCCCTTTCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCCE
T ss_pred             cccccccccccccccccccccccchhhhcccccccccccccccccccccccccccccccccccccccceeeecccccccc
Confidence             33333444456667777777777654322211111   2334444445556666653 34443 367788888877654


Q ss_pred             cccccccCCCCCCEEEecCCCCCCccc-cccCCCCCCcEEEcccCCCcccch-hhhccCCcCEEeccCCCCccccc
Q 037308          214 SLPSSLFKLKSLGVLNLGGCSNLQRLP-ECLGQLSSPIILNLAKTNVERIPE-SIIQLFVLRYLLLSYSERIQSVS  287 (321)
Q Consensus       214 ~~~~~~~~l~~L~~L~l~~~~~~~~~~-~~~~~~~~L~~L~l~~n~l~~l~~-~l~~l~~L~~L~l~~n~~l~~~~  287 (321)
                       ++.......++..+....++..+.+| ..|.++++|+.|++++|+++.+|. .+.+++.|+.+++   ..++.+|
T Consensus       168 -i~~~~~~~~~l~~~~~l~~n~l~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~l~~---~~l~~lp  239 (242)
T d1xwdc1         168 -IHNCAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSYGLENLKKLRARST---YNLKKLP  239 (242)
T ss_dssp             -ECTTTTTTCCEEEEECTTCTTCCCCCTTTTTTSCCCSEEECTTSCCCCCCSSSCTTCCEEESSSE---ESSSCSC
T ss_pred             -cccccccchhhhccccccccccccccHHHhcCCCCCCEEECCCCcCCccCHHHHcCCcccccCcC---CCCCcCC
Confidence             33334455666666544444344444 457888999999999999998875 3444554444444   3455544

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.62  E-value=2.1e-15  Score=125.36  Aligned_cols=210  Identities=15%  Similarity=0.086  Sum_probs=152.1

Q ss_pred             eEEeccCCcccccccCCCCCCChHhHHhhccccccccCCCCCCCCCCCCccEEEccCCCCCcccC-ccccCcccCcEEec
Q 037308           83 VFLKVPYSDIEQLWNGEKHYSNLNQIINATCNKLIAKTPNPTLMPHLNKLVILNLRGSKSLKSLP-SGIFNLEFLTKLDL  161 (321)
Q Consensus        83 ~~L~l~~~~l~~~~~~~~~l~~L~~~l~l~~~~l~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p-~~l~~l~~L~~L~l  161 (321)
                      +.++.++..++.+|..+.  +++++ +++++|.++ .++. ..|.++++|++|++++|.+...++ ..|.+++.++.+.+
T Consensus        11 ~~i~c~~~~l~~iP~~l~--~~l~~-L~Ls~n~i~-~l~~-~~f~~l~~L~~L~ls~n~~~~~i~~~~f~~l~~l~~l~~   85 (242)
T d1xwdc1          11 RVFLCQESKVTEIPSDLP--RNAIE-LRFVLTKLR-VIQK-GAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRI   85 (242)
T ss_dssp             SEEEEESCSCSSCCSCSC--SCCSE-EEEESCCCC-EECT-TTTTTCTTCCEEEEESCTTCCEECSSSEESCTTCCEEEE
T ss_pred             CEEEEeCCCCCCcCCCCC--CCCCE-EECcCCcCC-ccCh-hHhhccchhhhhhhccccccceeeccccccccccccccc
Confidence            467777778888876543  46888 999999998 7763 268999999999999998766554 45788999999998


Q ss_pred             CCCCCccccccc---ccCCccEEEeccccccccCh--hhhccCCCCeEecccCcccccccccccCCC-CCCEEEecCCCC
Q 037308          162 SGCSKLKRLLEI---SSGNINWLFLRETAIEELPS--SIERLLRLGHLDLSDCKRLKSLPSSLFKLK-SLGVLNLGGCSN  235 (321)
Q Consensus       162 ~~~~~~~~~~~~---~~~~L~~L~l~~~~i~~l~~--~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~-~L~~L~l~~~~~  235 (321)
                      ..+..+...+..   .+++|++++++++.+...+.  .+..+..+..+....+.+....+..+..++ .++.|++.+|.+
T Consensus        86 ~~~n~l~~~~~~~~~~l~~L~~l~l~~~~l~~~~~~~~~~~l~~l~~~~~~n~~l~~i~~~~~~~~~~~l~~L~l~~n~l  165 (242)
T d1xwdc1          86 EKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGI  165 (242)
T ss_dssp             ECCTTCCEECTTSEECCTTCCEEEEESCCCCSCCCCTTTCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCC
T ss_pred             cccccccccccccccccccccccccchhhhcccccccccccccccccccccccccccccccccccccccceeeecccccc
Confidence            775555544432   47899999999999987663  234445555555555555544445555554 788899998777


Q ss_pred             CCccccccCCCCCCcEE-EcccCCCcccch-hhhccCCcCEEeccCCCCccccc--Cccccccccccc
Q 037308          236 LQRLPECLGQLSSPIIL-NLAKTNVERIPE-SIIQLFVLRYLLLSYSERIQSVS--LPLARGILEDTQ  299 (321)
Q Consensus       236 ~~~~~~~~~~~~~L~~L-~l~~n~l~~l~~-~l~~l~~L~~L~l~~n~~l~~~~--~~~~l~~l~~~~  299 (321)
                      ....+..+ ..++++.+ ++++|.++.+|. .+..+++|++|++++| .++++|  ...++..|....
T Consensus       166 ~~i~~~~~-~~~~l~~~~~l~~n~l~~l~~~~f~~l~~L~~L~Ls~N-~l~~l~~~~~~~l~~L~~l~  231 (242)
T d1xwdc1         166 QEIHNCAF-NGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRT-RIHSLPSYGLENLKKLRARS  231 (242)
T ss_dssp             CEECTTTT-TTCCEEEEECTTCTTCCCCCTTTTTTSCCCSEEECTTS-CCCCCCSSSCTTCCEEESSS
T ss_pred             cccccccc-cchhhhccccccccccccccHHHhcCCCCCCEEECCCC-cCCccCHHHHcCCcccccCc
Confidence            64433333 44555555 567889999986 4788999999999999 799887  556666665544

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.61  E-value=1.8e-16  Score=135.44  Aligned_cols=201  Identities=23%  Similarity=0.242  Sum_probs=119.6

Q ss_pred             CcCceeEEeccCCcccc--cccCCCCCCChHhHHhhccccccccCCCCCCCCCCCCccEEEccCCCCCcc--cCccccCc
Q 037308           78 SAEKLVFLKVPYSDIEQ--LWNGEKHYSNLNQIINATCNKLIAKTPNPTLMPHLNKLVILNLRGSKSLKS--LPSGIFNL  153 (321)
Q Consensus        78 ~l~~L~~L~l~~~~l~~--~~~~~~~l~~L~~~l~l~~~~l~~~~~~~~~~~~l~~L~~L~l~~n~~~~~--~p~~l~~l  153 (321)
                      ...+|++|+++++.+..  +...+..+++|++ +++.++.+.+....  .+..+++|++|++++|..++.  +...+..+
T Consensus        44 ~~~~L~~LdLs~~~i~~~~l~~l~~~c~~L~~-L~L~~~~l~~~~~~--~l~~~~~L~~L~Ls~c~~itd~~l~~l~~~~  120 (284)
T d2astb2          44 SPFRVQHMDLSNSVIEVSTLHGILSQCSKLQN-LSLEGLRLSDPIVN--TLAKNSNLVRLNLSGCSGFSEFALQTLLSSC  120 (284)
T ss_dssp             CCBCCCEEECTTCEECHHHHHHHHTTBCCCSE-EECTTCBCCHHHHH--HHTTCTTCSEEECTTCBSCCHHHHHHHHHHC
T ss_pred             cCCCCCEEECCCCccCHHHHHHHHHhCCCccc-ccccccCCCcHHHH--HHhcCCCCcCccccccccccccccchhhHHH
Confidence            34455555555555432  1222334444554 55544444322222  456678888888888653332  22224567


Q ss_pred             ccCcEEecCCCCCccc--ccc---cccCCccEEEeccc--cccc--cChhhhccCCCCeEecccCc-ccccccccccCCC
Q 037308          154 EFLTKLDLSGCSKLKR--LLE---ISSGNINWLFLRET--AIEE--LPSSIERLLRLGHLDLSDCK-RLKSLPSSLFKLK  223 (321)
Q Consensus       154 ~~L~~L~l~~~~~~~~--~~~---~~~~~L~~L~l~~~--~i~~--l~~~~~~l~~L~~L~l~~n~-~~~~~~~~~~~l~  223 (321)
                      ++|++|++++|..++.  +..   ...++|+.|+++++  .+++  +.....++++|++|++++|. +++.....+.+++
T Consensus       121 ~~L~~L~ls~c~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~i~~~~l~~l~~~~~~L~~L~L~~~~~itd~~~~~l~~~~  200 (284)
T d2astb2         121 SRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLN  200 (284)
T ss_dssp             TTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCT
T ss_pred             HhccccccccccccccccchhhhcccccccchhhhcccccccccccccccccccccccccccccccCCCchhhhhhcccC
Confidence            8888888888765432  111   13567888888764  3332  33334667888888888765 4555666677888


Q ss_pred             CCCEEEecCCC-CCCccccccCCCCCCcEEEcccCCCc--ccchhhhccCCcCEEeccCCCCcccc
Q 037308          224 SLGVLNLGGCS-NLQRLPECLGQLSSPIILNLAKTNVE--RIPESIIQLFVLRYLLLSYSERIQSV  286 (321)
Q Consensus       224 ~L~~L~l~~~~-~~~~~~~~~~~~~~L~~L~l~~n~l~--~l~~~l~~l~~L~~L~l~~n~~l~~~  286 (321)
                      +|++|++++|. +.......++.+++|+.|+++++ ++  .++.....+|.|+   + +|..++.+
T Consensus       201 ~L~~L~L~~C~~i~~~~l~~L~~~~~L~~L~l~~~-~~d~~l~~l~~~lp~L~---i-~~~~ls~~  261 (284)
T d2astb2         201 YLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI-VPDGTLQLLKEALPHLQ---I-NCSHFTTI  261 (284)
T ss_dssp             TCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS-SCTTCHHHHHHHSTTSE---E-SCCCSCCT
T ss_pred             cCCEEECCCCCCCChHHHHHHhcCCCCCEEeeeCC-CCHHHHHHHHHhCcccc---c-cCccCCCC
Confidence            88888888874 44444456777888888888887 44  3333335566664   2 34355544

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.54  E-value=3e-14  Score=114.17  Aligned_cols=126  Identities=21%  Similarity=0.174  Sum_probs=80.7

Q ss_pred             ccEEEccCCCCCcccCccccCcccCcEEecCCCCCccccccc---ccCCccEEEeccccccccC-hhhhccCCCCeEecc
Q 037308          132 LVILNLRGSKSLKSLPSGIFNLEFLTKLDLSGCSKLKRLLEI---SSGNINWLFLRETAIEELP-SSIERLLRLGHLDLS  207 (321)
Q Consensus       132 L~~L~l~~n~~~~~~p~~l~~l~~L~~L~l~~~~~~~~~~~~---~~~~L~~L~l~~~~i~~l~-~~~~~l~~L~~L~l~  207 (321)
                      .+.++.++++ ...+|+.+  .+.+++|++++|......+..   .+++|++|++++|.+..++ ..+..+++|++|+++
T Consensus        10 ~~~v~Cs~~~-L~~iP~~l--p~~l~~L~Ls~N~i~~~~~~~~f~~l~~L~~L~L~~N~i~~~~~~~~~~~~~L~~L~Ls   86 (192)
T d1w8aa_          10 GTTVDCTGRG-LKEIPRDI--PLHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLG   86 (192)
T ss_dssp             TTEEECTTSC-CSSCCSCC--CTTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECC
T ss_pred             CCEEEEeCCC-cCccCCCC--CCCCCEEEeCCCCCcccccccccCCCceEeeeeccccccccccccccccccccceeeec
Confidence            3456677666 44566544  256777777776543323222   3566777777777777654 345666777777777


Q ss_pred             cCcccccccccccCCCCCCEEEecCCCCCCccccccCCCCCCcEEEcccCCCc
Q 037308          208 DCKRLKSLPSSLFKLKSLGVLNLGGCSNLQRLPECLGQLSSPIILNLAKTNVE  260 (321)
Q Consensus       208 ~n~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~  260 (321)
                      +|++....+..|.++++|+.|++++|.+.+..+.+|..+++|+.|++++|.+.
T Consensus        87 ~N~l~~l~~~~F~~l~~L~~L~L~~N~l~~i~~~~f~~l~~L~~l~L~~N~~~  139 (192)
T d1w8aa_          87 ENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFN  139 (192)
T ss_dssp             SCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBC
T ss_pred             cccccccCHHHHhCCCcccccccCCccccccCHHHhcCCcccccccccccccc
Confidence            77766655666677777777777776666655666677777777777777666

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.54  E-value=2.7e-14  Score=114.44  Aligned_cols=124  Identities=23%  Similarity=0.158  Sum_probs=70.6

Q ss_pred             HhhccccccccCCCCCCCCCCCCccEEEccCCCCCccc-CccccCcccCcEEecCCCCCccccccc--ccCCccEEEecc
Q 037308          109 INATCNKLIAKTPNPTLMPHLNKLVILNLRGSKSLKSL-PSGIFNLEFLTKLDLSGCSKLKRLLEI--SSGNINWLFLRE  185 (321)
Q Consensus       109 l~l~~~~l~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~-p~~l~~l~~L~~L~l~~~~~~~~~~~~--~~~~L~~L~l~~  185 (321)
                      ++.+.+.++ .+|.  .+  .+.+++|+|++|.+.... +..|..+++|++|++++|......+..  .+++|++|++++
T Consensus        13 v~Cs~~~L~-~iP~--~l--p~~l~~L~Ls~N~i~~~~~~~~f~~l~~L~~L~L~~N~i~~~~~~~~~~~~~L~~L~Ls~   87 (192)
T d1w8aa_          13 VDCTGRGLK-EIPR--DI--PLHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGE   87 (192)
T ss_dssp             EECTTSCCS-SCCS--CC--CTTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCS
T ss_pred             EEEeCCCcC-ccCC--CC--CCCCCEEEeCCCCCcccccccccCCCceEeeeeccccccccccccccccccccceeeecc
Confidence            445555665 5554  33  245666666666654333 334556666666666665443322222  355666666666


Q ss_pred             ccccccCh-hhhccCCCCeEecccCcccccccccccCCCCCCEEEecCCCCCC
Q 037308          186 TAIEELPS-SIERLLRLGHLDLSDCKRLKSLPSSLFKLKSLGVLNLGGCSNLQ  237 (321)
Q Consensus       186 ~~i~~l~~-~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~~~~~~  237 (321)
                      |.++.++. .|.++++|++|++++|.+.+..+..|..+++|++|++++|++..
T Consensus        88 N~l~~l~~~~F~~l~~L~~L~L~~N~l~~i~~~~f~~l~~L~~l~L~~N~~~~  140 (192)
T d1w8aa_          88 NKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNC  140 (192)
T ss_dssp             CCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCC
T ss_pred             ccccccCHHHHhCCCcccccccCCccccccCHHHhcCCccccccccccccccc
Confidence            66666553 35566666666666666655555556666666666666665544

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.49  E-value=5.1e-14  Score=109.53  Aligned_cols=109  Identities=18%  Similarity=0.103  Sum_probs=62.2

Q ss_pred             cCCccEEEeccccccccChhhhccCCCCeEecccCcccccccccccCCCCCCEEEecCCCCCCccccccCCCCCCcEEEc
Q 037308          175 SGNINWLFLRETAIEELPSSIERLLRLGHLDLSDCKRLKSLPSSLFKLKSLGVLNLGGCSNLQRLPECLGQLSSPIILNL  254 (321)
Q Consensus       175 ~~~L~~L~l~~~~i~~l~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l  254 (321)
                      +.+++.|++++|.|+.++..+..+++|+.|++++|.+.. ++ .+..+++|+.|++++|.+....+..+..+++|+.|++
T Consensus        17 ~~~lr~L~L~~n~I~~i~~~~~~l~~L~~L~Ls~N~i~~-l~-~~~~l~~L~~L~ls~N~i~~l~~~~~~~l~~L~~L~L   94 (162)
T d1a9na_          17 AVRDRELDLRGYKIPVIENLGATLDQFDAIDFSDNEIRK-LD-GFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELIL   94 (162)
T ss_dssp             TTSCEEEECTTSCCCSCCCGGGGTTCCSEEECCSSCCCE-EC-CCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCEEEC
T ss_pred             cCcCcEEECCCCCCCccCccccccccCCEEECCCCCCCc-cC-CcccCcchhhhhcccccccCCCcccccccccccccee
Confidence            334555555556666665444555666666666666443 22 3556666666666666554433333445666666666


Q ss_pred             ccCCCcccch--hhhccCCcCEEeccCCCCcccc
Q 037308          255 AKTNVERIPE--SIIQLFVLRYLLLSYSERIQSV  286 (321)
Q Consensus       255 ~~n~l~~l~~--~l~~l~~L~~L~l~~n~~l~~~  286 (321)
                      ++|+++.++.  .+..+++|++|++++| .+...
T Consensus        95 ~~N~i~~~~~l~~l~~l~~L~~L~l~~N-~i~~~  127 (162)
T d1a9na_          95 TNNSLVELGDLDPLASLKSLTYLCILRN-PVTNK  127 (162)
T ss_dssp             CSCCCCCGGGGGGGGGCTTCCEEECCSS-GGGGS
T ss_pred             ccccccccccccccccccccchhhcCCC-ccccc
Confidence            6666665542  4556666666666666 44443

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.48  E-value=1.6e-14  Score=123.13  Aligned_cols=214  Identities=17%  Similarity=0.159  Sum_probs=146.4

Q ss_pred             eeEEeccCCcccccccCCCCCCChHhHHhhcccccccc-CCCCCCCCCCCCccEEEccCCCCCcccCccccCcccCcEEe
Q 037308           82 LVFLKVPYSDIEQLWNGEKHYSNLNQIINATCNKLIAK-TPNPTLMPHLNKLVILNLRGSKSLKSLPSGIFNLEFLTKLD  160 (321)
Q Consensus        82 L~~L~l~~~~l~~~~~~~~~l~~L~~~l~l~~~~l~~~-~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~l~~l~~L~~L~  160 (321)
                      ...+.++...+...........++++ ++++.+.+... +..  .+.++++|++|++++|.+....+..+.++++|+.|+
T Consensus        25 ~~~lrl~~~~~~~~~~~~~~~~~L~~-LdLs~~~i~~~~l~~--l~~~c~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~  101 (284)
T d2astb2          25 VIAFRCPRSFMDQPLAEHFSPFRVQH-MDLSNSVIEVSTLHG--ILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLN  101 (284)
T ss_dssp             CSEEECTTCEECSCCCSCCCCBCCCE-EECTTCEECHHHHHH--HHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEE
T ss_pred             ceEeeccccccccchhhhccCCCCCE-EECCCCccCHHHHHH--HHHhCCCcccccccccCCCcHHHHHHhcCCCCcCcc
Confidence            34455555554443344455667777 88887776522 232  467889999999999986666666678899999999


Q ss_pred             cCCCCCcccc--ccc--ccCCccEEEeccc-cccc--cChhhhc-cCCCCeEecccCc--ccc-cccccccCCCCCCEEE
Q 037308          161 LSGCSKLKRL--LEI--SSGNINWLFLRET-AIEE--LPSSIER-LLRLGHLDLSDCK--RLK-SLPSSLFKLKSLGVLN  229 (321)
Q Consensus       161 l~~~~~~~~~--~~~--~~~~L~~L~l~~~-~i~~--l~~~~~~-l~~L~~L~l~~n~--~~~-~~~~~~~~l~~L~~L~  229 (321)
                      +++|..++..  ...  .+++|++|++++| .+++  +...+.. .+.|+.|+++++.  +.+ .+.....++++|+.|+
T Consensus       102 Ls~c~~itd~~l~~l~~~~~~L~~L~ls~c~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~i~~~~l~~l~~~~~~L~~L~  181 (284)
T d2astb2         102 LSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLD  181 (284)
T ss_dssp             CTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEE
T ss_pred             ccccccccccccchhhHHHHhccccccccccccccccchhhhcccccccchhhhcccccccccccccccccccccccccc
Confidence            9998766532  111  4789999999886 4443  3333333 4689999998753  332 2333456789999999


Q ss_pred             ecCCCC-CCccccccCCCCCCcEEEcccC-CCc-ccchhhhccCCcCEEeccCCCCccccc-Ccccccccccc
Q 037308          230 LGGCSN-LQRLPECLGQLSSPIILNLAKT-NVE-RIPESIIQLFVLRYLLLSYSERIQSVS-LPLARGILEDT  298 (321)
Q Consensus       230 l~~~~~-~~~~~~~~~~~~~L~~L~l~~n-~l~-~l~~~l~~l~~L~~L~l~~n~~l~~~~-~~~~l~~l~~~  298 (321)
                      +++|.. .......+..+++|+.|++++| .++ .-...++.+++|++|++.+|-.-..+. +...++.|++.
T Consensus       182 L~~~~~itd~~~~~l~~~~~L~~L~L~~C~~i~~~~l~~L~~~~~L~~L~l~~~~~d~~l~~l~~~lp~L~i~  254 (284)
T d2astb2         182 LSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGIVPDGTLQLLKEALPHLQIN  254 (284)
T ss_dssp             CTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTSSCTTCHHHHHHHSTTSEES
T ss_pred             cccccCCCchhhhhhcccCcCCEEECCCCCCCChHHHHHHhcCCCCCEEeeeCCCCHHHHHHHHHhCcccccc
Confidence            999854 4456677888999999999996 566 334567889999999999983323333 44555556553

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.47  E-value=5e-14  Score=109.56  Aligned_cols=128  Identities=21%  Similarity=0.141  Sum_probs=77.4

Q ss_pred             CCCCCCccEEEccCCCCCcccCccccCcccCcEEecCCCCCcccccccccCCccEEEeccccccccChhhhccCCCCeEe
Q 037308          126 MPHLNKLVILNLRGSKSLKSLPSGIFNLEFLTKLDLSGCSKLKRLLEISSGNINWLFLRETAIEELPSSIERLLRLGHLD  205 (321)
Q Consensus       126 ~~~l~~L~~L~l~~n~~~~~~p~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~i~~l~~~~~~l~~L~~L~  205 (321)
                      +....++++|++++|. +..++..+..+++|++|++++|                      .+++++ .+..+++|++|+
T Consensus        14 ~~n~~~lr~L~L~~n~-I~~i~~~~~~l~~L~~L~Ls~N----------------------~i~~l~-~~~~l~~L~~L~   69 (162)
T d1a9na_          14 YTNAVRDRELDLRGYK-IPVIENLGATLDQFDAIDFSDN----------------------EIRKLD-GFPLLRRLKTLL   69 (162)
T ss_dssp             EECTTSCEEEECTTSC-CCSCCCGGGGTTCCSEEECCSS----------------------CCCEEC-CCCCCSSCCEEE
T ss_pred             ccCcCcCcEEECCCCC-CCccCccccccccCCEEECCCC----------------------CCCccC-CcccCcchhhhh
Confidence            4456677777777776 4444554455666666666664                      334442 244556666666


Q ss_pred             cccCcccccccccccCCCCCCEEEecCCCCCCcc-ccccCCCCCCcEEEcccCCCcccch----hhhccCCcCEEec
Q 037308          206 LSDCKRLKSLPSSLFKLKSLGVLNLGGCSNLQRL-PECLGQLSSPIILNLAKTNVERIPE----SIIQLFVLRYLLL  277 (321)
Q Consensus       206 l~~n~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~-~~~~~~~~~L~~L~l~~n~l~~l~~----~l~~l~~L~~L~l  277 (321)
                      +++|.+....+..+..+++|+.|++++|.+...- ...+..+++|+.|++++|.++..|.    .+..+|+|++|+-
T Consensus        70 ls~N~i~~l~~~~~~~l~~L~~L~L~~N~i~~~~~l~~l~~l~~L~~L~l~~N~i~~~~~~r~~~i~~lp~L~~LD~  146 (162)
T d1a9na_          70 VNNNRICRIGEGLDQALPDLTELILTNNSLVELGDLDPLASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLDF  146 (162)
T ss_dssp             CCSSCCCEECSCHHHHCTTCCEEECCSCCCCCGGGGGGGGGCTTCCEEECCSSGGGGSTTHHHHHHHHCTTCSEETT
T ss_pred             cccccccCCCccccccccccccceeccccccccccccccccccccchhhcCCCccccccchHHHHHHHCCCcCeeCC
Confidence            6666655444444455666667776666554321 1356667778888888887776653    3566777777753

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=99.46  E-value=1.4e-14  Score=126.83  Aligned_cols=244  Identities=14%  Similarity=0.086  Sum_probs=156.0

Q ss_pred             hhhccChhhhcCCCCceEEEEeecCCCCccccceeccCCCCc-CcccEEEecCCCCCCCCCc------------CCcCce
Q 037308           16 KEIRLNLSTFTKMPKLRFLKFYSSSFNGENKCKVSYLQDPRF-AEVKYFHWHGYPLKSLPSN------------LSAEKL   82 (321)
Q Consensus        16 ~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~l~~-~~L~~l~l~~~~l~~~~~~------------~~l~~L   82 (321)
                      ++...-..++....+|++|+|++|.++....  ......+.. ++|+.++++++........            ...++|
T Consensus        18 e~~~~l~~~L~~~~~l~~L~Ls~n~i~~~~~--~~l~~~l~~~~~L~~l~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~L   95 (344)
T d2ca6a1          18 EDEKSVFAVLLEDDSVKEIVLSGNTIGTEAA--RWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKL   95 (344)
T ss_dssp             HHHHTTSHHHHHCSCCCEEECTTSEECHHHH--HHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTC
T ss_pred             HHHHHHHHHHhhCCCCCEEECcCCcCCHHHH--HHHHHHHHhCCCCCEEECCCCcccccccccchHHHHHHHHHhhCCCc
Confidence            3444444667778999999999987654322  223344555 8999999988765443321            146788


Q ss_pred             eEEeccCCcccccccCCCCCCChHhHHhhccccccccCCCCCCCCCCCCccEEEccCCCCCcccC----c---------c
Q 037308           83 VFLKVPYSDIEQLWNGEKHYSNLNQIINATCNKLIAKTPNPTLMPHLNKLVILNLRGSKSLKSLP----S---------G  149 (321)
Q Consensus        83 ~~L~l~~~~l~~~~~~~~~l~~L~~~l~l~~~~l~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p----~---------~  149 (321)
                      ++|++++|.+...  +   ...+..                 .+...++|++|++++|.+.....    .         .
T Consensus        96 ~~L~L~~n~i~~~--~---~~~l~~-----------------~l~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~~~~  153 (344)
T d2ca6a1          96 HTVRLSDNAFGPT--A---QEPLID-----------------FLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKK  153 (344)
T ss_dssp             CEEECCSCCCCTT--T---HHHHHH-----------------HHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHH
T ss_pred             ccccccccccccc--c---ccchhh-----------------hhcccccchheecccccccccccccccccccccccccc
Confidence            8888888876541  1   001111                 22235677888888876422100    0         0


Q ss_pred             ccCcccCcEEecCCCCCccc----cccc--ccCCccEEEeccccccc------cChhhhccCCCCeEecccCccccc---
Q 037308          150 IFNLEFLTKLDLSGCSKLKR----LLEI--SSGNINWLFLRETAIEE------LPSSIERLLRLGHLDLSDCKRLKS---  214 (321)
Q Consensus       150 l~~l~~L~~L~l~~~~~~~~----~~~~--~~~~L~~L~l~~~~i~~------l~~~~~~l~~L~~L~l~~n~~~~~---  214 (321)
                      ....+.|+.++++.+.....    +...  ..+.|+.|++++|.++.      +...+..+++|++|++++|.+...   
T Consensus       154 ~~~~~~L~~l~l~~n~i~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~g~~~~l~~~l~~~~~L~~L~Ls~N~i~~~g~~  233 (344)
T d2ca6a1         154 AKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSS  233 (344)
T ss_dssp             HHTCCCCCEEECCSSCCTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHH
T ss_pred             cccCcccceeecccccccccccccccchhhhhhhhcccccccccccccccccchhhhhcchhhhcccccccccccccccc
Confidence            12456788888887643221    1111  36678888888888774      223466778899999999886543   


Q ss_pred             -ccccccCCCCCCEEEecCCCCCCc----cccccC--CCCCCcEEEcccCCCcc-----cchhhh-ccCCcCEEeccCCC
Q 037308          215 -LPSSLFKLKSLGVLNLGGCSNLQR----LPECLG--QLSSPIILNLAKTNVER-----IPESII-QLFVLRYLLLSYSE  281 (321)
Q Consensus       215 -~~~~~~~l~~L~~L~l~~~~~~~~----~~~~~~--~~~~L~~L~l~~n~l~~-----l~~~l~-~l~~L~~L~l~~n~  281 (321)
                       +...+..+++|++|++++|.+...    +.+.+.  ..+.|+.|++++|.++.     +...+. .++.|++|++++| 
T Consensus       234 ~L~~~l~~~~~L~~L~Ls~n~i~~~g~~~l~~~l~~~~~~~L~~L~ls~N~i~~~~~~~l~~~l~~~~~~L~~L~l~~N-  312 (344)
T d2ca6a1         234 ALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGN-  312 (344)
T ss_dssp             HHHHHGGGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTS-
T ss_pred             cccccccccccchhhhhhcCccCchhhHHHHHHhhhccCCCCCEEECCCCcCChHHHHHHHHHHHccCCCCCEEECCCC-
Confidence             344567889999999999887654    223333  34679999999999872     444443 5789999999998 


Q ss_pred             Ccc
Q 037308          282 RIQ  284 (321)
Q Consensus       282 ~l~  284 (321)
                      .+.
T Consensus       313 ~~~  315 (344)
T d2ca6a1         313 RFS  315 (344)
T ss_dssp             BSC
T ss_pred             cCC
Confidence            443

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.46  E-value=2.7e-13  Score=100.38  Aligned_cols=104  Identities=23%  Similarity=0.257  Sum_probs=76.7

Q ss_pred             cEEEeccccccccChhhhccCCCCeEecccCcccccccccccCCCCCCEEEecCCCCCCccccccCCCCCCcEEEcccCC
Q 037308          179 NWLFLRETAIEELPSSIERLLRLGHLDLSDCKRLKSLPSSLFKLKSLGVLNLGGCSNLQRLPECLGQLSSPIILNLAKTN  258 (321)
Q Consensus       179 ~~L~l~~~~i~~l~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~  258 (321)
                      ++|++++|.++.++. +.++++|++|++++|.+. .+|..++.+++|+.|++++|.+.+ ++ .++.+++|+.|++++|+
T Consensus         1 R~L~Ls~n~l~~l~~-l~~l~~L~~L~ls~N~l~-~lp~~~~~l~~L~~L~l~~N~i~~-l~-~~~~l~~L~~L~l~~N~   76 (124)
T d1dcea3           1 RVLHLAHKDLTVLCH-LEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALEN-VD-GVANLPRLQELLLCNNR   76 (124)
T ss_dssp             SEEECTTSCCSSCCC-GGGGTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCC-CG-GGTTCSSCCEEECCSSC
T ss_pred             CEEEcCCCCCCCCcc-cccCCCCCEEECCCCccC-cchhhhhhhhcccccccccccccc-cC-ccccccccCeEECCCCc
Confidence            467777788877764 777788888888887765 456667788888888888876654 33 57788888888888888


Q ss_pred             Ccccc--hhhhccCCcCEEeccCCCCccccc
Q 037308          259 VERIP--ESIIQLFVLRYLLLSYSERIQSVS  287 (321)
Q Consensus       259 l~~l~--~~l~~l~~L~~L~l~~n~~l~~~~  287 (321)
                      ++.++  ..+..+++|+.|++++| .+...+
T Consensus        77 i~~~~~~~~l~~~~~L~~L~l~~N-~i~~~~  106 (124)
T d1dcea3          77 LQQSAAIQPLVSCPRLVLLNLQGN-SLCQEE  106 (124)
T ss_dssp             CCSSSTTGGGGGCTTCCEEECTTS-GGGGSS
T ss_pred             cCCCCCchhhcCCCCCCEEECCCC-cCCcCc
Confidence            88665  35677888888888888 555443

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.40  E-value=2e-12  Score=95.59  Aligned_cols=99  Identities=20%  Similarity=0.108  Sum_probs=71.8

Q ss_pred             cCCccEEEeccccccccChhhhccCCCCeEecccCcccccccccccCCCCCCEEEecCCCCCCcc-ccccCCCCCCcEEE
Q 037308          175 SGNINWLFLRETAIEELPSSIERLLRLGHLDLSDCKRLKSLPSSLFKLKSLGVLNLGGCSNLQRL-PECLGQLSSPIILN  253 (321)
Q Consensus       175 ~~~L~~L~l~~~~i~~l~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~-~~~~~~~~~L~~L~  253 (321)
                      +.+|++|++++|.++++|..++.+++|++|++++|.+.+ ++ .++.+++|+.|++++|.+...- ...+..+++|+.|+
T Consensus        19 l~~L~~L~ls~N~l~~lp~~~~~l~~L~~L~l~~N~i~~-l~-~~~~l~~L~~L~l~~N~i~~~~~~~~l~~~~~L~~L~   96 (124)
T d1dcea3          19 LLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALEN-VD-GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLN   96 (124)
T ss_dssp             GTTCCEEECCSSCCCCCCGGGGGCTTCCEEECCSSCCCC-CG-GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEE
T ss_pred             CCCCCEEECCCCccCcchhhhhhhhcccccccccccccc-cC-ccccccccCeEECCCCccCCCCCchhhcCCCCCCEEE
Confidence            334445555556677777778888899999999988665 34 3788899999999988776432 24677889999999


Q ss_pred             cccCCCcccc---h-hhhccCCcCEE
Q 037308          254 LAKTNVERIP---E-SIIQLFVLRYL  275 (321)
Q Consensus       254 l~~n~l~~l~---~-~l~~l~~L~~L  275 (321)
                      +++|+++..+   . ....+|+|++|
T Consensus        97 l~~N~i~~~~~~~~~l~~~lp~L~~L  122 (124)
T d1dcea3          97 LQGNSLCQEEGIQERLAEMLPSVSSI  122 (124)
T ss_dssp             CTTSGGGGSSSCTTHHHHHCTTCSEE
T ss_pred             CCCCcCCcCccHHHHHHHHCcCcceE
Confidence            9999987443   2 33557888776

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.32  E-value=4e-14  Score=127.68  Aligned_cols=174  Identities=19%  Similarity=0.082  Sum_probs=116.2

Q ss_pred             CCCccEEEccCCCCCc-----ccCccccCcccCcEEecCCCCCccccc----cc--ccCCccEEEeccccccc-----cC
Q 037308          129 LNKLVILNLRGSKSLK-----SLPSGIFNLEFLTKLDLSGCSKLKRLL----EI--SSGNINWLFLRETAIEE-----LP  192 (321)
Q Consensus       129 l~~L~~L~l~~n~~~~-----~~p~~l~~l~~L~~L~l~~~~~~~~~~----~~--~~~~L~~L~l~~~~i~~-----l~  192 (321)
                      .+.++.+++++|....     ..+........++.+++++|.......    ..  ..+.++.+++++|.++.     +.
T Consensus       225 ~~~~~~l~~~~n~~~~~~~~~~~~~~~~~~~~l~~l~l~~n~i~~~~~~~~~~~l~~~~~l~~l~l~~n~i~~~~~~~l~  304 (460)
T d1z7xw1         225 KASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLC  304 (460)
T ss_dssp             CTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHH
T ss_pred             cccccccchhhccccccccchhhcccccccccccccccccccccccccccccccccccccccccccccccccccccchhh
Confidence            3556677776665321     112223456789999999976543221    11  46789999999998874     22


Q ss_pred             hhh-hccCCCCeEecccCcccccccc----cccCCCCCCEEEecCCCCCCc----cccccC-CCCCCcEEEcccCCCcc-
Q 037308          193 SSI-ERLLRLGHLDLSDCKRLKSLPS----SLFKLKSLGVLNLGGCSNLQR----LPECLG-QLSSPIILNLAKTNVER-  261 (321)
Q Consensus       193 ~~~-~~l~~L~~L~l~~n~~~~~~~~----~~~~l~~L~~L~l~~~~~~~~----~~~~~~-~~~~L~~L~l~~n~l~~-  261 (321)
                      ..+ .....|+.+++++|.+......    .+...++|+.|++++|++...    +++.+. ..+.|+.|++++|.++. 
T Consensus       305 ~~l~~~~~~L~~l~l~~~~l~~~~~~~l~~~~~~~~~L~~L~Ls~N~i~~~g~~~l~~~l~~~~~~L~~L~Ls~n~i~~~  384 (460)
T d1z7xw1         305 ETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDS  384 (460)
T ss_dssp             HHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHH
T ss_pred             ccccccccccccccccccchhhhhhhhcccccccccchhhhheeeecccCcccchhhhhhhcccCCCCEEECCCCCCChH
Confidence            222 2345799999999887654333    344667899999999877542    334443 46779999999999973 


Q ss_pred             ----cchhhhccCCcCEEeccCCCCcccc---------c-CccccccccccccCcc
Q 037308          262 ----IPESIIQLFVLRYLLLSYSERIQSV---------S-LPLARGILEDTQRSPH  303 (321)
Q Consensus       262 ----l~~~l~~l~~L~~L~l~~n~~l~~~---------~-~~~~l~~l~~~~~~~~  303 (321)
                          ++..+..+++|++|++++| .++.-         . ....++.+++..+...
T Consensus       385 ~~~~l~~~l~~~~~L~~L~Ls~N-~i~~~g~~~l~~~l~~~~~~L~~l~l~~~~~~  439 (460)
T d1z7xw1         385 SCSSLAATLLANHSLRELDLSNN-CLGDAGILQLVESVRQPGCLLEQLVLYDIYWS  439 (460)
T ss_dssp             HHHHHHHHHHHCCCCCEEECCSS-SCCHHHHHHHHHHHTSTTCCCCEEECTTCCCC
T ss_pred             HHHHHHHHHhcCCCCCEEECCCC-cCCHHHHHHHHHHHHhCCCccCEEECCCCCCC
Confidence                4556778899999999999 66431         1 2236788888776554

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.31  E-value=1.9e-13  Score=123.16  Aligned_cols=293  Identities=13%  Similarity=0.078  Sum_probs=181.4

Q ss_pred             ceEEEEeecCchhhhccChhhhcCCCCceEEEEeecCCCCccccceeccCCCCc-CcccEEEecCCCCCC-----CCCcC
Q 037308            4 KIEGICLDMSTVKEIRLNLSTFTKMPKLRFLKFYSSSFNGENKCKVSYLQDPRF-AEVKYFHWHGYPLKS-----LPSNL   77 (321)
Q Consensus         4 ~~~~~~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~l~~-~~L~~l~l~~~~l~~-----~~~~~   77 (321)
                      +++.+++.-....+..+. ..+..+++++.|+|.+|.++....  ......+.. ++|+.|++++|.++.     +...+
T Consensus         3 ~l~~ld~~~~~i~~~~~~-~l~~~l~~l~~L~L~~~~i~~~~~--~~l~~~L~~~~~L~~LdLs~N~i~~~~~~~l~~~l   79 (460)
T d1z7xw1           3 DIQSLDIQCEELSDARWA-ELLPLLQQCQVVRLDDCGLTEARC--KDISSALRVNPALAELNLRSNELGDVGVHCVLQGL   79 (460)
T ss_dssp             EEEEEEEESCCCCHHHHH-HHHHHHTTCSEEEEESSCCCHHHH--HHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTT
T ss_pred             CCCEEEeeCCcCChHHHH-HHHHhCCCCCEEEeCCCCCCHHHH--HHHHHHHhcCCCCCEEECcCCcCChHHHHHHHHHH
Confidence            566666644444333221 345668899999999997653321  122233445 899999999998743     11122


Q ss_pred             --CcCceeEEeccCCccccc-----ccCCCCCCChHhHHhhccccccccC----------------------CCC-----
Q 037308           78 --SAEKLVFLKVPYSDIEQL-----WNGEKHYSNLNQIINATCNKLIAKT----------------------PNP-----  123 (321)
Q Consensus        78 --~l~~L~~L~l~~~~l~~~-----~~~~~~l~~L~~~l~l~~~~l~~~~----------------------~~~-----  123 (321)
                        ...+|++|++++|+++..     ...+...++|++ ++++.|.+....                      +..     
T Consensus        80 ~~~~~~L~~L~L~~n~it~~~~~~l~~~l~~~~~L~~-L~L~~N~i~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~  158 (460)
T d1z7xw1          80 QTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQE-LHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASC  158 (460)
T ss_dssp             CSTTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCE-EECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGH
T ss_pred             hcCCCCCCEEECCCCCccccccccccchhhccccccc-cccccccchhhhhhhhhhcccccccccccccccccccchhhh
Confidence              345799999999998653     345667888888 888777754100                      000     


Q ss_pred             ----CCCCCCCCccEEEccCCCCCcc---------------------------------cCccccCcccCcEEecCCCCC
Q 037308          124 ----TLMPHLNKLVILNLRGSKSLKS---------------------------------LPSGIFNLEFLTKLDLSGCSK  166 (321)
Q Consensus       124 ----~~~~~l~~L~~L~l~~n~~~~~---------------------------------~p~~l~~l~~L~~L~l~~~~~  166 (321)
                          ..+.....++.++++++.....                                 ....+...+.++.+.++.|..
T Consensus       159 ~~~~~~l~~~~~~~~~~ls~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~n~~  238 (460)
T d1z7xw1         159 EPLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKL  238 (460)
T ss_dssp             HHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBC
T ss_pred             cccccccccccccccccccccccccccccccccccccccccccccccccccccchhhhcccccccccccccccchhhccc
Confidence                0001123455566555432100                                 000112345666777776543


Q ss_pred             ccc-----cccc--ccCCccEEEecccccccc-----ChhhhccCCCCeEecccCccccccccc-----ccCCCCCCEEE
Q 037308          167 LKR-----LLEI--SSGNINWLFLRETAIEEL-----PSSIERLLRLGHLDLSDCKRLKSLPSS-----LFKLKSLGVLN  229 (321)
Q Consensus       167 ~~~-----~~~~--~~~~L~~L~l~~~~i~~l-----~~~~~~l~~L~~L~l~~n~~~~~~~~~-----~~~l~~L~~L~  229 (321)
                      ...     ....  ....++.+++++|.+...     ...+...+.++.+++++|.+.......     ......|+.++
T Consensus       239 ~~~~~~~~~~~~~~~~~~l~~l~l~~n~i~~~~~~~~~~~l~~~~~l~~l~l~~n~i~~~~~~~l~~~l~~~~~~L~~l~  318 (460)
T d1z7xw1         239 GDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLW  318 (460)
T ss_dssp             HHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEE
T ss_pred             cccccchhhcccccccccccccccccccccccccccccccccccccccccccccccccccccchhhcccccccccccccc
Confidence            221     0111  356799999999988752     234567789999999999876432222     12456899999


Q ss_pred             ecCCCCCCccc----cccCCCCCCcEEEcccCCCcc-----cchhhh-ccCCcCEEeccCCCCccccc---------Ccc
Q 037308          230 LGGCSNLQRLP----ECLGQLSSPIILNLAKTNVER-----IPESII-QLFVLRYLLLSYSERIQSVS---------LPL  290 (321)
Q Consensus       230 l~~~~~~~~~~----~~~~~~~~L~~L~l~~n~l~~-----l~~~l~-~l~~L~~L~l~~n~~l~~~~---------~~~  290 (321)
                      +++|.+.....    ..+...++|++|++++|.++.     ++..+. ..+.|++|++++| .+++..         --+
T Consensus       319 l~~~~l~~~~~~~l~~~~~~~~~L~~L~Ls~N~i~~~g~~~l~~~l~~~~~~L~~L~Ls~n-~i~~~~~~~l~~~l~~~~  397 (460)
T d1z7xw1         319 VKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADC-DVSDSSCSSLAATLLANH  397 (460)
T ss_dssp             CTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTS-CCCHHHHHHHHHHHHHCC
T ss_pred             ccccchhhhhhhhcccccccccchhhhheeeecccCcccchhhhhhhcccCCCCEEECCCC-CCChHHHHHHHHHHhcCC
Confidence            99988765432    234456789999999999872     444443 4568999999999 776522         126


Q ss_pred             ccccccccccC
Q 037308          291 ARGILEDTQRS  301 (321)
Q Consensus       291 ~l~~l~~~~~~  301 (321)
                      ++++|++++..
T Consensus       398 ~L~~L~Ls~N~  408 (460)
T d1z7xw1         398 SLRELDLSNNC  408 (460)
T ss_dssp             CCCEEECCSSS
T ss_pred             CCCEEECCCCc
Confidence            78888888753

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.23  E-value=2.1e-11  Score=93.82  Aligned_cols=105  Identities=16%  Similarity=0.027  Sum_probs=69.2

Q ss_pred             ccEEEeccccccccChhhhccCCCCeEecccCc-ccccccccccCCCCCCEEEecCCCCCCccccccCCCCCCcEEEccc
Q 037308          178 INWLFLRETAIEELPSSIERLLRLGHLDLSDCK-RLKSLPSSLFKLKSLGVLNLGGCSNLQRLPECLGQLSSPIILNLAK  256 (321)
Q Consensus       178 L~~L~l~~~~i~~l~~~~~~l~~L~~L~l~~n~-~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~  256 (321)
                      .+.++..++.+.++|..+..+++|++|++++|+ +....+..|.++++|+.|++++|.+...-+.+|..+++|+.|++++
T Consensus        10 ~~~l~c~~~~~~~~p~~l~~l~~l~~L~l~~n~~l~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~Ls~   89 (156)
T d2ifga3          10 SSGLRCTRDGALDSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSF   89 (156)
T ss_dssp             SSCEECCSSCCCTTTTTSCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCS
T ss_pred             CCeEEecCCCCccCcccccCccccCeeecCCCccccccCchhhccccccCcceeeccccCCcccccccccccccceeccC
Confidence            344555556666666666666777777776554 4444445677777777777777766665566677777777777777


Q ss_pred             CCCcccchhhhccCCcCEEeccCCCC
Q 037308          257 TNVERIPESIIQLFVLRYLLLSYSER  282 (321)
Q Consensus       257 n~l~~l~~~l~~l~~L~~L~l~~n~~  282 (321)
                      |+++.+|........|++|++++|+.
T Consensus        90 N~l~~l~~~~~~~~~l~~L~L~~Np~  115 (156)
T d2ifga3          90 NALESLSWKTVQGLSLQELVLSGNPL  115 (156)
T ss_dssp             SCCSCCCSTTTCSCCCCEEECCSSCC
T ss_pred             CCCcccChhhhccccccccccCCCcc
Confidence            77777775544445677777777744

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=99.22  E-value=3.3e-13  Score=108.46  Aligned_cols=113  Identities=19%  Similarity=0.124  Sum_probs=65.6

Q ss_pred             ccCccccCcccCcEEecCCCCCccccccc-ccCCccEEEeccccccccChhhhccCCCCeEecccCcccccccccccCCC
Q 037308          145 SLPSGIFNLEFLTKLDLSGCSKLKRLLEI-SSGNINWLFLRETAIEELPSSIERLLRLGHLDLSDCKRLKSLPSSLFKLK  223 (321)
Q Consensus       145 ~~p~~l~~l~~L~~L~l~~~~~~~~~~~~-~~~~L~~L~l~~~~i~~l~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~  223 (321)
                      .++..++.+++|++|++++|. ++.++.. .+.+|+.|++++|.+++++.....++.|+.|++++|.+.. ++ .+..++
T Consensus        39 ~l~~sl~~L~~L~~L~Ls~n~-I~~i~~l~~l~~L~~L~Ls~N~i~~i~~~~~~~~~L~~L~l~~N~i~~-l~-~~~~l~  115 (198)
T d1m9la_          39 KMDATLSTLKACKHLALSTNN-IEKISSLSGMENLRILSLGRNLIKKIENLDAVADTLEELWISYNQIAS-LS-GIEKLV  115 (198)
T ss_dssp             CCHHHHHHTTTCCEEECSEEE-ESCCCCHHHHTTCCEEECCEEEECSCSSHHHHHHHCCEEECSEEECCC-HH-HHHHHH
T ss_pred             hhhhHHhcccccceeECcccC-CCCcccccCCccccChhhcccccccccccccccccccccccccccccc-cc-cccccc
Confidence            344456666677777776643 3333322 3556666666666666666544445567777777766543 22 255666


Q ss_pred             CCCEEEecCCCCCCcc-ccccCCCCCCcEEEcccCCCc
Q 037308          224 SLGVLNLGGCSNLQRL-PECLGQLSSPIILNLAKTNVE  260 (321)
Q Consensus       224 ~L~~L~l~~~~~~~~~-~~~~~~~~~L~~L~l~~n~l~  260 (321)
                      +|+.|++++|.+.... ...+..+++|+.|++++|++.
T Consensus       116 ~L~~L~L~~N~i~~~~~~~~l~~l~~L~~L~L~~N~l~  153 (198)
T d1m9la_         116 NLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLY  153 (198)
T ss_dssp             HSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSSHHH
T ss_pred             cccccccccchhccccccccccCCCccceeecCCCccc
Confidence            6777777666554321 134566677777777776654

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=99.21  E-value=1.3e-11  Score=107.43  Aligned_cols=178  Identities=16%  Similarity=0.055  Sum_probs=126.8

Q ss_pred             CCCCCCccEEEccCCCCCcc----cCccccCcccCcEEecCCCCCccc--------ccc-------cccCCccEEEeccc
Q 037308          126 MPHLNKLVILNLRGSKSLKS----LPSGIFNLEFLTKLDLSGCSKLKR--------LLE-------ISSGNINWLFLRET  186 (321)
Q Consensus       126 ~~~l~~L~~L~l~~n~~~~~----~p~~l~~l~~L~~L~l~~~~~~~~--------~~~-------~~~~~L~~L~l~~~  186 (321)
                      +..+++|++|++++|.+...    +...+...++|++|++++|.....        +..       ...+.|+.++++++
T Consensus        89 l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~~~~~~~~~~L~~l~l~~n  168 (344)
T d2ca6a1          89 LLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRN  168 (344)
T ss_dssp             HTTCTTCCEEECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSS
T ss_pred             HhhCCCcccccccccccccccccchhhhhcccccchheecccccccccccccccccccccccccccccCcccceeecccc
Confidence            45678899999999985442    333455678999999999753211        000       13568999999999


Q ss_pred             cccc-----cChhhhccCCCCeEecccCccccc-----ccccccCCCCCCEEEecCCCCCCc----cccccCCCCCCcEE
Q 037308          187 AIEE-----LPSSIERLLRLGHLDLSDCKRLKS-----LPSSLFKLKSLGVLNLGGCSNLQR----LPECLGQLSSPIIL  252 (321)
Q Consensus       187 ~i~~-----l~~~~~~l~~L~~L~l~~n~~~~~-----~~~~~~~l~~L~~L~l~~~~~~~~----~~~~~~~~~~L~~L  252 (321)
                      .++.     +...+...+.|+.|+++.|.+...     +...+..+++|+.|++++|.+...    +...+..+++|+.|
T Consensus       169 ~i~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~g~~~~l~~~l~~~~~L~~L~Ls~N~i~~~g~~~L~~~l~~~~~L~~L  248 (344)
T d2ca6a1         169 RLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLREL  248 (344)
T ss_dssp             CCTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEE
T ss_pred             cccccccccccchhhhhhhhcccccccccccccccccchhhhhcchhhhcccccccccccccccccccccccccccchhh
Confidence            8874     344567788999999999987642     334567889999999999876532    44567789999999


Q ss_pred             EcccCCCcc-----cchhhhc--cCCcCEEeccCCCCcccc-----c-----CccccccccccccCccc
Q 037308          253 NLAKTNVER-----IPESIIQ--LFVLRYLLLSYSERIQSV-----S-----LPLARGILEDTQRSPHM  304 (321)
Q Consensus       253 ~l~~n~l~~-----l~~~l~~--l~~L~~L~l~~n~~l~~~-----~-----~~~~l~~l~~~~~~~~~  304 (321)
                      ++++|.++.     +...+..  .+.|++|++++| .++.-     .     -.+.++.|++.+..-..
T Consensus       249 ~Ls~n~i~~~g~~~l~~~l~~~~~~~L~~L~ls~N-~i~~~~~~~l~~~l~~~~~~L~~L~l~~N~~~~  316 (344)
T d2ca6a1         249 GLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYN-EIELDAVRTLKTVIDEKMPDLLFLELNGNRFSE  316 (344)
T ss_dssp             ECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSS-CCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCT
T ss_pred             hhhcCccCchhhHHHHHHhhhccCCCCCEEECCCC-cCChHHHHHHHHHHHccCCCCCEEECCCCcCCC
Confidence            999999983     3333433  467999999999 56431     1     13568888887755433

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=99.15  E-value=2e-13  Score=109.70  Aligned_cols=124  Identities=23%  Similarity=0.257  Sum_probs=69.8

Q ss_pred             CCCCCCccEEEccCCCCCcccCccccCcccCcEEecCCCCCccccccc--ccCCccEEEeccccccccChhhhccCCCCe
Q 037308          126 MPHLNKLVILNLRGSKSLKSLPSGIFNLEFLTKLDLSGCSKLKRLLEI--SSGNINWLFLRETAIEELPSSIERLLRLGH  203 (321)
Q Consensus       126 ~~~l~~L~~L~l~~n~~~~~~p~~l~~l~~L~~L~l~~~~~~~~~~~~--~~~~L~~L~l~~~~i~~l~~~~~~l~~L~~  203 (321)
                      +..+++|++|++++|.+ ..+++ ++.+++|+.|++++|. ++.++..  .+++|++|++++|.++.++ .+..+++|++
T Consensus        44 l~~L~~L~~L~Ls~n~I-~~i~~-l~~l~~L~~L~Ls~N~-i~~i~~~~~~~~~L~~L~l~~N~i~~l~-~~~~l~~L~~  119 (198)
T d1m9la_          44 LSTLKACKHLALSTNNI-EKISS-LSGMENLRILSLGRNL-IKKIENLDAVADTLEELWISYNQIASLS-GIEKLVNLRV  119 (198)
T ss_dssp             HHHTTTCCEEECSEEEE-SCCCC-HHHHTTCCEEECCEEE-ECSCSSHHHHHHHCCEEECSEEECCCHH-HHHHHHHSSE
T ss_pred             HhcccccceeECcccCC-CCccc-ccCCccccChhhcccc-cccccccccccccccccccccccccccc-cccccccccc
Confidence            44455666666666552 33332 5556666666666543 2333322  2345666666666666654 3566667777


Q ss_pred             EecccCccccccc-ccccCCCCCCEEEecCCCCCCcccc----------ccCCCCCCcEEE
Q 037308          204 LDLSDCKRLKSLP-SSLFKLKSLGVLNLGGCSNLQRLPE----------CLGQLSSPIILN  253 (321)
Q Consensus       204 L~l~~n~~~~~~~-~~~~~l~~L~~L~l~~~~~~~~~~~----------~~~~~~~L~~L~  253 (321)
                      |++++|.+..... ..++.+++|+.|++++|++....+.          .+..+|+|+.||
T Consensus       120 L~L~~N~i~~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~~r~~vi~~lp~L~~LD  180 (198)
T d1m9la_         120 LYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD  180 (198)
T ss_dssp             EEESEEECCCHHHHHHHTTTTTCSEEEECSSHHHHHHCTTTTHHHHHHHHHHHCSSCCEES
T ss_pred             cccccchhccccccccccCCCccceeecCCCccccCcccccchhhHHHHHHHHCCCcCEeC
Confidence            7777766544221 3466777777777777654332211          144577788776

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.00  E-value=3.1e-09  Score=81.29  Aligned_cols=107  Identities=16%  Similarity=-0.005  Sum_probs=63.6

Q ss_pred             CccEEEccCCCCCcccCccccCcccCcEEecCCCCCcccccccccCCccEEEeccccccccCh-hhhccCCCCeEecccC
Q 037308          131 KLVILNLRGSKSLKSLPSGIFNLEFLTKLDLSGCSKLKRLLEISSGNINWLFLRETAIEELPS-SIERLLRLGHLDLSDC  209 (321)
Q Consensus       131 ~L~~L~l~~n~~~~~~p~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~i~~l~~-~~~~l~~L~~L~l~~n  209 (321)
                      ..+.++.+++. ....|..+..+++|+.|++.++.                     .++.++. .|.++++|+.|++++|
T Consensus         9 ~~~~l~c~~~~-~~~~p~~l~~l~~l~~L~l~~n~---------------------~l~~i~~~~f~~l~~L~~L~Ls~N   66 (156)
T d2ifga3           9 GSSGLRCTRDG-ALDSLHHLPGAENLTELYIENQQ---------------------HLQHLELRDLRGLGELRNLTIVKS   66 (156)
T ss_dssp             SSSCEECCSSC-CCTTTTTSCSCSCCSEEECCSCS---------------------SCCEECGGGSCSCCCCSEEECCSS
T ss_pred             CCCeEEecCCC-CccCcccccCccccCeeecCCCc---------------------cccccCchhhccccccCcceeecc
Confidence            34455555554 33344445555555555555433                     2444442 3566677777777777


Q ss_pred             cccccccccccCCCCCCEEEecCCCCCCccccccCCCCCCcEEEcccCCCc
Q 037308          210 KRLKSLPSSLFKLKSLGVLNLGGCSNLQRLPECLGQLSSPIILNLAKTNVE  260 (321)
Q Consensus       210 ~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~  260 (321)
                      ++....+..|.++++|+.|++++|.+...-+..+. ..+|+.|++++|.+.
T Consensus        67 ~l~~i~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~-~~~l~~L~L~~Np~~  116 (156)
T d2ifga3          67 GLRFVAPDAFHFTPRLSRLNLSFNALESLSWKTVQ-GLSLQELVLSGNPLH  116 (156)
T ss_dssp             CCCEECTTGGGSCSCCCEEECCSSCCSCCCSTTTC-SCCCCEEECCSSCCC
T ss_pred             ccCCcccccccccccccceeccCCCCcccChhhhc-cccccccccCCCccc
Confidence            76666566677777777777777666543333343 336778888877775

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.21  E-value=9.1e-08  Score=73.34  Aligned_cols=65  Identities=22%  Similarity=0.107  Sum_probs=29.0

Q ss_pred             hccCCCCeEecccCccccc--ccccccCCCCCCEEEecCCCCCCccccccCCCCCCcEEEcccCCCc
Q 037308          196 ERLLRLGHLDLSDCKRLKS--LPSSLFKLKSLGVLNLGGCSNLQRLPECLGQLSSPIILNLAKTNVE  260 (321)
Q Consensus       196 ~~l~~L~~L~l~~n~~~~~--~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~  260 (321)
                      ..++.|++|++++|.+...  ++..+..+++|+.|++++|.+...-.-.+.....|+.|++++|.+.
T Consensus        62 ~~~~~L~~L~Ls~N~i~~l~~~~~~~~~l~~L~~L~Ls~N~i~~l~~l~~l~~~~L~~L~L~~Npl~  128 (162)
T d1koha1          62 ENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLKLEELWLDGNSLS  128 (162)
T ss_dssp             HHCTTCCCCCCCSSCCCCCSGGGTHHHHSTTCCCCCCTTSCCCCGGGHHHHTTCCCSSCCCTTSTTS
T ss_pred             HhCCCCCEeeCCCccccCCchhHHHHhhCCcccccccccCccccchhhhhhhccccceeecCCCCcC
Confidence            3445555555555554432  1222344555555555554443322112222334555555555554

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=98.00  E-value=3.5e-06  Score=64.48  Aligned_cols=87  Identities=15%  Similarity=0.020  Sum_probs=55.1

Q ss_pred             hhhccCCCCeEecccCccccc----ccccccCCCCCCEEEecCCCCCCc----cccccCCCCCCcEEEcccCCCcc----
Q 037308          194 SIERLLRLGHLDLSDCKRLKS----LPSSLFKLKSLGVLNLGGCSNLQR----LPECLGQLSSPIILNLAKTNVER----  261 (321)
Q Consensus       194 ~~~~l~~L~~L~l~~n~~~~~----~~~~~~~l~~L~~L~l~~~~~~~~----~~~~~~~~~~L~~L~l~~n~l~~----  261 (321)
                      .+...+.|++|++++|.+...    +...+...++|+.|++++|.+...    +..++...++|++|++++|.+..    
T Consensus        39 ~L~~n~~L~~L~Ls~n~l~~~~~~~la~~L~~n~~L~~L~L~~n~i~~~g~~~l~~aL~~n~sL~~L~l~~n~~~~~g~~  118 (167)
T d1pgva_          39 AACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARLLRSTLVTQSIVEFKADNQRQSVLGNQ  118 (167)
T ss_dssp             HHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHHHHHTTTTCCCSEEECCCCSSCCCCHH
T ss_pred             HHhhCCccceeeccccccchhHHHHHhhhhhhcccccceeeehhhcchHHHHHHHHHHHhCCcCCEEECCCCcCCCccHH
Confidence            455566777777777776542    223344567778888877766543    33456667778888888776543    


Q ss_pred             ----cchhhhccCCcCEEeccCC
Q 037308          262 ----IPESIIQLFVLRYLLLSYS  280 (321)
Q Consensus       262 ----l~~~l~~l~~L~~L~l~~n  280 (321)
                          +...+...++|++|+++.+
T Consensus       119 ~~~~l~~~L~~n~sL~~l~l~~~  141 (167)
T d1pgva_         119 VEMDMMMAIEENESLLRVGISFA  141 (167)
T ss_dssp             HHHHHHHHHHHCSSCCEEECCCC
T ss_pred             HHHHHHHHHHhCCCccEeeCcCC
Confidence                3334455677777777655

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.90  E-value=2.1e-06  Score=65.43  Aligned_cols=79  Identities=19%  Similarity=0.094  Sum_probs=54.5

Q ss_pred             cCCccEEEeccccccccC---hhhhccCCCCeEecccCcccccccccccCCCCCCEEEecCCCCCCccc-------cccC
Q 037308          175 SGNINWLFLRETAIEELP---SSIERLLRLGHLDLSDCKRLKSLPSSLFKLKSLGVLNLGGCSNLQRLP-------ECLG  244 (321)
Q Consensus       175 ~~~L~~L~l~~~~i~~l~---~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~-------~~~~  244 (321)
                      +++|++|++++|.++.++   ..+..+++|+.|++++|.+....+-.......|+.|++++|++.....       ..+.
T Consensus        64 ~~~L~~L~Ls~N~i~~l~~~~~~~~~l~~L~~L~Ls~N~i~~l~~l~~l~~~~L~~L~L~~Npl~~~~~~~~~y~~~i~~  143 (162)
T d1koha1          64 IPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLKLEELWLDGNSLSDTFRDQSTYISAIRE  143 (162)
T ss_dssp             CTTCCCCCCCSSCCCCCSGGGTHHHHSTTCCCCCCTTSCCCCGGGHHHHTTCCCSSCCCTTSTTSSSSSSHHHHHHHHHT
T ss_pred             CCCCCEeeCCCccccCCchhHHHHhhCCcccccccccCccccchhhhhhhccccceeecCCCCcCcCcccchhHHHHHHH
Confidence            667888888888887754   336678889999999888665433233345578888888887765432       2345


Q ss_pred             CCCCCcEEE
Q 037308          245 QLSSPIILN  253 (321)
Q Consensus       245 ~~~~L~~L~  253 (321)
                      .+|+|+.||
T Consensus       144 ~~P~L~~LD  152 (162)
T d1koha1         144 RFPKLLRLD  152 (162)
T ss_dssp             TSTTCCEET
T ss_pred             HCCCCCEEC
Confidence            677777775

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=97.76  E-value=1.7e-05  Score=60.44  Aligned_cols=83  Identities=17%  Similarity=0.106  Sum_probs=51.6

Q ss_pred             CccEEEeccccccc-----cChhhhccCCCCeEecccCccccc----ccccccCCCCCCEEEecCCCCCC-------ccc
Q 037308          177 NINWLFLRETAIEE-----LPSSIERLLRLGHLDLSDCKRLKS----LPSSLFKLKSLGVLNLGGCSNLQ-------RLP  240 (321)
Q Consensus       177 ~L~~L~l~~~~i~~-----l~~~~~~l~~L~~L~l~~n~~~~~----~~~~~~~l~~L~~L~l~~~~~~~-------~~~  240 (321)
                      +|+.|++++|.+..     +...+...+.|++|++++|.+.+.    +...+...++|++|++++|....       .+.
T Consensus        45 ~L~~L~Ls~n~l~~~~~~~la~~L~~n~~L~~L~L~~n~i~~~g~~~l~~aL~~n~sL~~L~l~~n~~~~~g~~~~~~l~  124 (167)
T d1pgva_          45 HIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARLLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMM  124 (167)
T ss_dssp             CCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHHHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHH
T ss_pred             ccceeeccccccchhHHHHHhhhhhhcccccceeeehhhcchHHHHHHHHHHHhCCcCCEEECCCCcCCCccHHHHHHHH
Confidence            34444444444442     333456667888888888877653    23346677888888888764321       134


Q ss_pred             cccCCCCCCcEEEcccCCC
Q 037308          241 ECLGQLSSPIILNLAKTNV  259 (321)
Q Consensus       241 ~~~~~~~~L~~L~l~~n~l  259 (321)
                      +.+...++|+.|+++.+..
T Consensus       125 ~~L~~n~sL~~l~l~~~~~  143 (167)
T d1pgva_         125 MAIEENESLLRVGISFASM  143 (167)
T ss_dssp             HHHHHCSSCCEEECCCCCH
T ss_pred             HHHHhCCCccEeeCcCCCc
Confidence            4555678888888876643

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=97.56  E-value=2.6e-05  Score=59.36  Aligned_cols=87  Identities=15%  Similarity=0.105  Sum_probs=53.5

Q ss_pred             hhhccCCCCeEecccCccccc----ccccccCCCCCCEEEecCCCCCCc----cccccCCCCCCcEEEc--ccCCCc---
Q 037308          194 SIERLLRLGHLDLSDCKRLKS----LPSSLFKLKSLGVLNLGGCSNLQR----LPECLGQLSSPIILNL--AKTNVE---  260 (321)
Q Consensus       194 ~~~~l~~L~~L~l~~n~~~~~----~~~~~~~l~~L~~L~l~~~~~~~~----~~~~~~~~~~L~~L~l--~~n~l~---  260 (321)
                      .+...++|++|++++|.+...    +...+...++++.+++++|.+...    +...+...++|+.++|  ++|.+.   
T Consensus        41 al~~n~~L~~L~Ls~n~l~~~~~~~L~~~l~~~~~l~~l~l~~~~~~~~g~~~l~~~l~~~~~L~~l~L~l~~n~i~~~~  120 (166)
T d1io0a_          41 ALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILALVEALQSNTSLIELRIDNQSQPLGNNV  120 (166)
T ss_dssp             HHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHHHHHGGGGCSSCCEEECCCCSSCCCHHH
T ss_pred             HHhcCCccCeeeccCCcccHHHHHHHHHHHhhcccchhhhhccccccchhHHHHHHHHHhCccccEEeeccCCCcCcHHH
Confidence            345566777777777765442    223345566777777777665432    2345566677776555  345564   


Q ss_pred             --ccchhhhccCCcCEEeccCC
Q 037308          261 --RIPESIIQLFVLRYLLLSYS  280 (321)
Q Consensus       261 --~l~~~l~~l~~L~~L~l~~n  280 (321)
                        .+...+...++|++|+++.+
T Consensus       121 ~~~La~~L~~n~~L~~L~l~~~  142 (166)
T d1io0a_         121 EMEIANMLEKNTTLLKFGYHFT  142 (166)
T ss_dssp             HHHHHHHHHHCSSCCEEECCCS
T ss_pred             HHHHHHHHHhCCCcCEEeCcCC
Confidence              34455667788888877665

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=97.02  E-value=0.00044  Score=52.15  Aligned_cols=84  Identities=14%  Similarity=0.042  Sum_probs=51.1

Q ss_pred             CCccEEEeccccccc-----cChhhhccCCCCeEecccCccccc----ccccccCCCCCCEEEec--CCCCCC----ccc
Q 037308          176 GNINWLFLRETAIEE-----LPSSIERLLRLGHLDLSDCKRLKS----LPSSLFKLKSLGVLNLG--GCSNLQ----RLP  240 (321)
Q Consensus       176 ~~L~~L~l~~~~i~~-----l~~~~~~l~~L~~L~l~~n~~~~~----~~~~~~~l~~L~~L~l~--~~~~~~----~~~  240 (321)
                      +.|++|++++|.++.     +...+...+.++.+++++|.+...    +...+...++|+.+++.  +|.+..    .+.
T Consensus        46 ~~L~~L~Ls~n~l~~~~~~~L~~~l~~~~~l~~l~l~~~~~~~~g~~~l~~~l~~~~~L~~l~L~l~~n~i~~~~~~~La  125 (166)
T d1io0a_          46 TYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIA  125 (166)
T ss_dssp             CSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHH
T ss_pred             CccCeeeccCCcccHHHHHHHHHHHhhcccchhhhhccccccchhHHHHHHHHHhCccccEEeeccCCCcCcHHHHHHHH
Confidence            344555555555443     333456667888888888776543    33456677788876665  334432    234


Q ss_pred             cccCCCCCCcEEEcccCCC
Q 037308          241 ECLGQLSSPIILNLAKTNV  259 (321)
Q Consensus       241 ~~~~~~~~L~~L~l~~n~l  259 (321)
                      ..+...+.|+.|+++.+..
T Consensus       126 ~~L~~n~~L~~L~l~~~~~  144 (166)
T d1io0a_         126 NMLEKNTTLLKFGYHFTQQ  144 (166)
T ss_dssp             HHHHHCSSCCEEECCCSSH
T ss_pred             HHHHhCCCcCEEeCcCCCC
Confidence            4556678888888876654