Citrus Sinensis ID: 037311

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90---
Protein Sequence
MASFSRNNKKYDVFVSFRGEDIRDNFTSHLYSALARQNIQTFIDDQLNRGDEISESLVKAIKASAISVIIFSEDYASSRWCLDEFAEILECKK
Secondary Structure (PSIPRED)
ccccccccccccEEEcccccccccccHHHHHHHHHHccccEEEcccccccccccHHHHHHHHHccEEEEEEccccccccHHHHHHHHHHHccc
Secondary Structure Prediction (SSPRO)
ccccccccccEEEEcccccHcHHHHHHHHHHHHHHHccccEEEcccccccccccHHHHHHHHHccEEEEEEEccccccHHHHHHHHHHHHHcc
Coil and Loop (DISEMBL)
masfsrnnkkydvfvsfrgedirdNFTSHLYSALARQNIQTFIDDQLNRGDEISESLVKAIKASAISVIIFSedyassrwCLDEFAEILECKK
Flexible Loop (DISEMBL)
masfsrnnkkydvfvsfrgediRDNFTSHLYSALARQNIQTFIDDQLNRGDEISESLVKAIKASAISVIIFSEDYASSRWCLDEFAEILECKK
Low Complexity Region (SEG)
MASFSRNNKKYDVFVSFRGEDIRDNFTSHLYSALARQNIQTFIDDQLNRGDEISESLvkaikasaisviiFSEDYASSRWCLDEFAEILECKK
Disordered region (IsUnstruct)
**********YDVFVSFRGEDIRDNFTSHLYSALARQNIQTFIDDQLNRGDEISESLVKAIKASAISVIIFSEDYASSRWCLDEFAEILE***
Disordered Region (DISOPRED)
******N**KYDVFVSFRGEDIRDNFTSHLYSALARQNIQTFIDDQLNRGDEISESLVKAIKASAISVIIFSEDYASSRWCLDEFAEILECKK
Disordered Region (DISEMBL)
********KKYDVFVSFRGEDIRDNFTSHLYSALARQNIQTFIDDQLNRGDEISESLVKAIKASAISVIIFSEDYASSRWCLDEFAEILECKK
Disordered Region (DISPRO)
*******NKKYDVFVSFRGEDIRDNFTSHLYSALARQNIQTFIDDQLNRGDEISESLVKAIKASAISVIIFSEDYASSRWCLDEFAEILECKK
Transmembrane Helix (TMHMM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MASFSRNNKKYDVFVSFRGEDIRDNFTSHLYSALARQNIQTFIDDQLNRGDEISESLVKAIKASAISVIIFSEDYASSRWCLDEFAEILECKK
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	93	2.2.26 [Sep-21-2011]
O82500	1095	Putative disease resistan	yes	no	1.0	0.084	0.548	8e-24
Q40392	1144	TMV resistance protein N	N/A	no	0.881	0.071	0.554	4e-21
O23530	1301	Protein SUPPRESSOR OF npr	no	no	0.924	0.066	0.528	3e-20
Q9FHE9	354	Protein PHLOEM PROTEIN 2-	no	no	0.838	0.220	0.468	4e-14
Q9C5Q9	411	Protein PHLOEM PROTEIN 2-	no	no	0.827	0.187	0.461	1e-12
Q9FHE8	392	Protein PHLOEM PROTEIN 2-	no	no	0.849	0.201	0.425	2e-10
Q9SYC9	571	Vesicle-associated protei	no	no	0.860	0.140	0.382	3e-10

>sp|O82500|Y4117_ARATH Putative disease resistance protein At4g11170 OS=Arabidopsis thaliana GN=At4g11170 PE=2 SV=1

 Score =  108 bits (271), Expect = 8e-24,   Method: Composition-based stats.
 Identities = 51/93 (54%), Positives = 64/93 (68%)

Query: 1  MASFSRNNKKYDVFVSFRGEDIRDNFTSHLYSALARQNIQTFIDDQLNRGDEISESLVKA 60
          MAS S N+ +YDVF SFRGED+R+NF SHL      + I TF DD + R   I   L  A
Sbjct: 1  MASSSSNSWRYDVFPSFRGEDVRNNFLSHLLKEFESKGIVTFRDDHIKRSHTIGHELRAA 60

Query: 61 IKASAISVIIFSEDYASSRWCLDEFAEILECKK 93
          I+ S ISV++FSE+YASS WCLDE  EI++CK+
Sbjct: 61 IRESKISVVLFSENYASSSWCLDELIEIMKCKE 93

Arabidopsis thaliana (taxid: 3702)

>sp|Q40392|TMVRN_NICGU TMV resistance protein N OS=Nicotiana glutinosa GN=N PE=1 SV=1

 Score = 99.8 bits (247), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 46/83 (55%), Positives = 60/83 (72%), Gaps = 1/83 (1%)

Query: 11 YDVFVSFRGEDIRDNFTSHLYSALARQNIQTFIDDQ-LNRGDEISESLVKAIKASAISVI 69
          YDVF+SFRGED R  FTSHLY  L  + I+TF DD+ L  G  I   L KAI+ S  +++
Sbjct: 12 YDVFLSFRGEDTRKTFTSHLYEVLNDKGIKTFQDDKRLEYGATIPGELCKAIEESQFAIV 71

Query: 70 IFSEDYASSRWCLDEFAEILECK 92
          +FSE+YA+SRWCL+E  +I+ECK
Sbjct: 72 VFSENYATSRWCLNELVKIMECK 94

Disease resistance protein. Resistance proteins guard the plant against pathogens that contain an appropriate avirulence protein via a direct or indirect interaction with this avirulence protein. That triggers a defense system including the hypersensitive response, which restricts the pathogen growth.

Nicotiana glutinosa (taxid: 35889)

>sp|O23530|SNC1_ARATH Protein SUPPRESSOR OF npr1-1, CONSTITUTIVE 1 OS=Arabidopsis thaliana GN=SNC1 PE=1 SV=3

 Score = 97.1 bits (240), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 46/87 (52%), Positives = 62/87 (71%), Gaps = 1/87 (1%)

Query: 5  SRNNKKYDVFVSFRGEDIRDNFTSHLYSALARQNIQTFIDDQLNRGDEISESLVKAIKAS 64
          S  +++YDVF SFRGED+RD+F SHL   L  + I TFIDD++ R   I   L+ AIK S
Sbjct: 6  SSGSRRYDVFPSFRGEDVRDSFLSHLLKELRGKAI-TFIDDEIERSRSIGPELLSAIKES 64

Query: 65 AISVIIFSEDYASSRWCLDEFAEILEC 91
           I+++IFS++YASS WCL+E  EI +C
Sbjct: 65 RIAIVIFSKNYASSTWCLNELVEIHKC 91

Disease resistance protein of the TIR-NB-LRR-type. Part of the RPP5 locus that contains a cluster of several paralogous disease resistance (R) genes. Resistance proteins guard the plant against pathogens that contain an appropriate avirulence protein via an indirect interaction with this avirulence protein. That triggers a defense system including the hypersensitive response, which restricts the pathogen growth. Regulated by RNA silencing. Expression regulated by MOS1 at chromatin level. Negatively regulated at the transcript level by BON1.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FHE9|P2A08_ARATH Protein PHLOEM PROTEIN 2-LIKE A8 OS=Arabidopsis thaliana GN=PP2A8 PE=2 SV=1

 Score = 76.6 bits (187), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 37/79 (46%), Positives = 52/79 (65%), Gaps = 1/79 (1%)

Query: 13 VFVSFRGEDIRDNFTSHLYSALARQNIQTFIDDQLNRGDEISESLVKAIKASAISVIIFS 72
          VF++FRG+D+R+ F S L  A+   NI  FID     G ++    V+ I+ S ++V+IFS
Sbjct: 16 VFINFRGKDLRNGFLSFLEPAMREANINVFIDKDEVVGTDLVNLFVR-IQESRVAVVIFS 74

Query: 73 EDYASSRWCLDEFAEILEC 91
          +DY SS WCLDE AEI +C
Sbjct: 75 KDYTSSEWCLDELAEIKDC 93

Arabidopsis thaliana (taxid: 3702)

>sp|Q9C5Q9|P2A05_ARATH Protein PHLOEM PROTEIN 2-LIKE A5 OS=Arabidopsis thaliana GN=PP2A5 PE=2 SV=1

 Score = 72.0 bits (175), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 36/78 (46%), Positives = 49/78 (62%), Gaps = 1/78 (1%)

Query: 13  VFVSFRGEDIRDNFTSHLYSALARQNIQTFIDDQLNRGDEISESLVKAIKASAISVIIFS 72
           VF++FRG+D+R  F S L  AL ++ I  FID+Q  RG  +  SL   I  S I+++IFS
Sbjct: 24  VFINFRGKDLRKGFMSFLKPALKKEKINVFIDEQEERGKYLI-SLFDTIGESKIALVIFS 82

Query: 73  EDYASSRWCLDEFAEILE 90
           E Y  S WC+DE  +I E
Sbjct: 83  EGYCESHWCMDELVKIKE 100

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FHE8|P2A06_ARATH Protein PHLOEM PROTEIN 2-LIKE A6 OS=Arabidopsis thaliana GN=PP2A6 PE=2 SV=1

 Score = 64.7 bits (156), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 34/80 (42%), Positives = 49/80 (61%), Gaps = 1/80 (1%)

Query: 13 VFVSFRGEDIRDNFTSHLYSALARQNIQTFIDDQLNRGDEISESLVKAIKASAISVIIFS 72
          VF+ FRG D+R +F S L  AL   NI  FID+    G E++  L + I+ S ++++IFS
Sbjct: 17 VFICFRGADVRKHFISFLVPALREANINVFIDENEFLGSEMANLLTR-IEESELALVIFS 75

Query: 73 EDYASSRWCLDEFAEILECK 92
           D+  S  CL+E A+I E K
Sbjct: 76 VDFTRSHRCLNELAKIKERK 95

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SYC9|VAP14_ARATH Vesicle-associated protein 1-4 OS=Arabidopsis thaliana GN=PVA14 PE=2 SV=1

 Score = 63.9 bits (154), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 31/81 (38%), Positives = 50/81 (61%), Gaps = 1/81 (1%)

Query: 10  KYDVFVSFRGEDIRDNFTSHLYSALARQNIQTFIDDQLNRGDEISESLVKAIKASAISVI 69
           +Y VF++FRG+++R++F   L  A+  + I  F D+   RG  ++  L + I+ S ++V 
Sbjct: 357 QYQVFINFRGDELRNSFVGFLVKAMRLEKINVFTDEVELRGTNLN-YLFRRIEESRVAVA 415

Query: 70  IFSEDYASSRWCLDEFAEILE 90
           IFSE Y  S WCLDE  ++ E
Sbjct: 416 IFSERYTESCWCLDELVKMKE 436

May play a role in vesicle trafficking.

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	93
255561496	876	TMV resistance protein N, putative [Rici	1.0	0.106	0.666	1e-29
255564976	944	TMV resistance protein N, putative [Rici	0.903	0.088	0.702	3e-28
224145016	1254	tir-nbs-lrr resistance protein [Populus	1.0	0.074	0.631	3e-27
356550897	970	PREDICTED: TMV resistance protein N-like	0.913	0.087	0.658	5e-27
255569048	1084	leucine-rich repeat-containing protein,	1.0	0.085	0.627	5e-27
224127754	1125	tir-nbs-lrr resistance protein [Populus	0.913	0.075	0.670	6e-27
224145362	155	predicted protein [Populus trichocarpa]	0.903	0.541	0.666	1e-26
317106744	947	JHS03A10.2 [Jatropha curcas]	0.924	0.090	0.662	3e-26
224145030	1435	tir-nbs-lrr resistance protein [Populus	0.903	0.058	0.654	3e-26
224169680	120	predicted protein [Populus trichocarpa]	0.903	0.7	0.642	4e-26

>gi|255561496|ref|XP_002521758.1| TMV resistance protein N, putative [Ricinus communis] gi|223538971|gb|EEF40568.1| TMV resistance protein N, putative [Ricinus communis]

 Score =  134 bits (336), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 62/93 (66%), Positives = 75/93 (80%)

Query: 1  MASFSRNNKKYDVFVSFRGEDIRDNFTSHLYSALARQNIQTFIDDQLNRGDEISESLVKA 60
          MA  + + KKYDVF+SFRGED RDNFTSHLYSAL ++ I TF+D ++ RG+EIS S+ KA
Sbjct: 1  MAPLATSEKKYDVFLSFRGEDTRDNFTSHLYSALNKKKIFTFMDKEIKRGEEISPSIAKA 60

Query: 61 IKASAISVIIFSEDYASSRWCLDEFAEILECKK 93
          IK S +SVIIFSE YA S+WCLDE  +ILECKK
Sbjct: 61 IKGSKLSVIIFSEKYAFSKWCLDELTKILECKK 93

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255564976|ref|XP_002523481.1| TMV resistance protein N, putative [Ricinus communis] gi|223537309|gb|EEF38940.1| TMV resistance protein N, putative [Ricinus communis]

 Score =  129 bits (323), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 59/84 (70%), Positives = 72/84 (85%)

Query: 10 KYDVFVSFRGEDIRDNFTSHLYSALARQNIQTFIDDQLNRGDEISESLVKAIKASAISVI 69
          KYDVFVSFRGED RDNFTSHLY+AL ++ I+ F+DD+L+RG+EIS +LVK I+ S +SVI
Sbjct: 15 KYDVFVSFRGEDTRDNFTSHLYAALHQKQIKAFVDDKLSRGEEISAALVKVIEESMVSVI 74

Query: 70 IFSEDYASSRWCLDEFAEILECKK 93
          IFSE+YA S WCLDE  +ILECKK
Sbjct: 75 IFSENYAFSPWCLDELVKILECKK 98

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224145016|ref|XP_002325496.1| tir-nbs-lrr resistance protein [Populus trichocarpa] gi|222862371|gb|EEE99877.1| tir-nbs-lrr resistance protein [Populus trichocarpa]

 Score =  125 bits (314), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 60/95 (63%), Positives = 77/95 (81%), Gaps = 2/95 (2%)

Query: 1  MASFSR--NNKKYDVFVSFRGEDIRDNFTSHLYSALARQNIQTFIDDQLNRGDEISESLV 58
          MAS S   + +KYDVF+SFRGED R+NFTSHLY AL R+ I+TFIDD L RG+EI+ +L+
Sbjct: 1  MASSSSVAHKRKYDVFLSFRGEDTRNNFTSHLYDALCRKKIKTFIDDGLERGEEITPALL 60

Query: 59 KAIKASAISVIIFSEDYASSRWCLDEFAEILECKK 93
          K I+ S ISV+IFS++YASS WC+DE  +ILECK+
Sbjct: 61 KKIEESRISVVIFSKNYASSPWCVDELVKILECKE 95

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356550897|ref|XP_003543819.1| PREDICTED: TMV resistance protein N-like [Glycine max]

 Score =  125 bits (313), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 56/85 (65%), Positives = 72/85 (84%)

Query: 9   KKYDVFVSFRGEDIRDNFTSHLYSALARQNIQTFIDDQLNRGDEISESLVKAIKASAISV 68
           KKYDVF+SFRGED R NFTSHLY AL ++ I+T+ID +L +GDEIS +L+KAI+ S +SV
Sbjct: 18  KKYDVFLSFRGEDTRKNFTSHLYEALKQKKIETYIDYRLEKGDEISAALIKAIEDSHVSV 77

Query: 69  IIFSEDYASSRWCLDEFAEILECKK 93
           +IFSE+YASS+WCL E  +I+ECKK
Sbjct: 78  VIFSENYASSKWCLGELGKIMECKK 102

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255569048|ref|XP_002525493.1| leucine-rich repeat-containing protein, putative [Ricinus communis] gi|223535172|gb|EEF36851.1| leucine-rich repeat-containing protein, putative [Ricinus communis]

 Score =  124 bits (312), Expect = 5e-27,   Method: Composition-based stats.
 Identities = 59/94 (62%), Positives = 77/94 (81%), Gaps = 1/94 (1%)

Query: 1  MASFSRNNK-KYDVFVSFRGEDIRDNFTSHLYSALARQNIQTFIDDQLNRGDEISESLVK 59
          MAS S + K K+DVF+SFRG+D RDNFTSHLY AL R+ I+TFID+ L RG+EI+ +L++
Sbjct: 1  MASSSNSPKRKFDVFLSFRGKDTRDNFTSHLYDALCRKKIKTFIDNGLERGEEITPALLR 60

Query: 60 AIKASAISVIIFSEDYASSRWCLDEFAEILECKK 93
           I+ S ISVI+FSE+YASS WCLDE  +ILEC++
Sbjct: 61 TIEESLISVIVFSENYASSPWCLDEMVKILECRE 94

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224127754|ref|XP_002329169.1| tir-nbs-lrr resistance protein [Populus trichocarpa] gi|222870950|gb|EEF08081.1| tir-nbs-lrr resistance protein [Populus trichocarpa]

 Score =  124 bits (312), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 57/85 (67%), Positives = 73/85 (85%)

Query: 9  KKYDVFVSFRGEDIRDNFTSHLYSALARQNIQTFIDDQLNRGDEISESLVKAIKASAISV 68
          +KYDVF+SFRGED R  F SHLY+AL R+ I TFID +LNRG+EIS SL+KAI+ S +SV
Sbjct: 13 EKYDVFLSFRGEDTRVCFVSHLYAALKRKQISTFIDYKLNRGEEISPSLLKAIEDSKLSV 72

Query: 69 IIFSEDYASSRWCLDEFAEILECKK 93
          ++FS++YASS+WCL+E A+ILECKK
Sbjct: 73 VVFSDNYASSKWCLEELAKILECKK 97

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224145362|ref|XP_002325614.1| predicted protein [Populus trichocarpa] gi|222862489|gb|EEE99995.1| predicted protein [Populus trichocarpa]

 Score =  123 bits (309), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 56/84 (66%), Positives = 71/84 (84%)

Query: 10 KYDVFVSFRGEDIRDNFTSHLYSALARQNIQTFIDDQLNRGDEISESLVKAIKASAISVI 69
          KYDVF+SFRGED R  FTSHLY+AL R+ I+TFID QL RGDEISESL++ I+ + +SVI
Sbjct: 9  KYDVFLSFRGEDTRVGFTSHLYAALDRKQIRTFIDYQLVRGDEISESLLRTIEEAKLSVI 68

Query: 70 IFSEDYASSRWCLDEFAEILECKK 93
          +FSE+YASS+WCL+E  +I EC+K
Sbjct: 69 VFSENYASSKWCLEELVKIFECRK 92

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|317106744|dbj|BAJ53239.1| JHS03A10.2 [Jatropha curcas]

 Score =  122 bits (305), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 57/86 (66%), Positives = 71/86 (82%)

Query: 8  NKKYDVFVSFRGEDIRDNFTSHLYSALARQNIQTFIDDQLNRGDEISESLVKAIKASAIS 67
           ++YDVF+SFRGED RD+FTSHLY+AL  + IQTFID+ L RG EIS SL+KAI+ S IS
Sbjct: 7  QERYDVFLSFRGEDTRDSFTSHLYAALCDKKIQTFIDNNLVRGKEISSSLLKAIEESKIS 66

Query: 68 VIIFSEDYASSRWCLDEFAEILECKK 93
          V I SE+YASS+WCL+E AEI++C K
Sbjct: 67 VPILSENYASSKWCLEELAEIIKCMK 92

Source: Jatropha curcas

Species: Jatropha curcas

Genus: Jatropha

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224145030|ref|XP_002325501.1| tir-nbs-lrr resistance protein [Populus trichocarpa] gi|222862376|gb|EEE99882.1| tir-nbs-lrr resistance protein [Populus trichocarpa]

 Score =  122 bits (305), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 55/84 (65%), Positives = 71/84 (84%)

Query: 10 KYDVFVSFRGEDIRDNFTSHLYSALARQNIQTFIDDQLNRGDEISESLVKAIKASAISVI 69
          KYDVF+SFRG+D R+NFTSHLY AL R+ I+TFIDD+L RG EI+ +L+K I+ S ISV+
Sbjct: 12 KYDVFLSFRGKDTRNNFTSHLYDALCRKKIKTFIDDRLERGGEITPALLKTIEESRISVV 71

Query: 70 IFSEDYASSRWCLDEFAEILECKK 93
          IFS++YASS WC+DE  +ILECK+
Sbjct: 72 IFSKNYASSPWCVDELVKILECKE 95

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224169680|ref|XP_002339290.1| predicted protein [Populus trichocarpa] gi|222874825|gb|EEF11956.1| predicted protein [Populus trichocarpa]

 Score =  122 bits (305), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 54/84 (64%), Positives = 71/84 (84%)

Query: 10 KYDVFVSFRGEDIRDNFTSHLYSALARQNIQTFIDDQLNRGDEISESLVKAIKASAISVI 69
          KYDVF+SFRG+D R+NFTSHLY AL R+ I+TFID+ L RG+EI+ +L+K I+ S ISV+
Sbjct: 12 KYDVFLSFRGQDTRNNFTSHLYDALCRKKIKTFIDNGLERGEEITPALLKTIEESRISVV 71

Query: 70 IFSEDYASSRWCLDEFAEILECKK 93
          IFS++YASS WC+DE  +ILECK+
Sbjct: 72 IFSKNYASSPWCVDELVKILECKE 95

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	93
TAIR|locus:2136108	1095	AT4G11170 [Arabidopsis thalian	1.0	0.084	0.483	1.5e-17
UNIPROTKB|Q40392	1144	N "TMV resistance protein N" [	0.989	0.080	0.489	6.5e-16
TAIR|locus:1006230150	313	AT2G20142 [Arabidopsis thalian	0.892	0.265	0.464	1.3e-15
TAIR|locus:2167457	1191	AT5G36930 [Arabidopsis thalian	0.892	0.069	0.5	1.8e-15
TAIR|locus:2118106	1219	AT4G12010 [Arabidopsis thalian	0.978	0.074	0.456	2.4e-15
TAIR|locus:2155189	980	AT5G49140 [Arabidopsis thalian	0.903	0.085	0.488	4.8e-15
TAIR|locus:2032733	176	TIR "toll/interleukin-1 recept	0.956	0.505	0.444	6.9e-15
TAIR|locus:2032718	380	AT1G72910 [Arabidopsis thalian	0.956	0.234	0.455	7.2e-15
TAIR|locus:2153072	1229	AT5G51630 [Arabidopsis thalian	1.0	0.075	0.451	1.1e-14
TAIR|locus:2205824	1384	AT1G27170 [Arabidopsis thalian	0.881	0.059	0.476	2e-14

TAIR|locus:2136108 AT4G11170 [Arabidopsis thaliana (taxid:3702)]

 Score = 227 (85.0 bits), Expect = 1.5e-17, P = 1.5e-17
 Identities = 45/93 (48%), Positives = 55/93 (59%)

Query:     1 MASFSRNNKKYDVFVSFRGEDIRDNFTSHLYSALARQNIQTFIDDQLNRGDEISESLXXX 60
             MAS S N+ +YDVF SFRGED+R+NF SHL      + I TF DD + R   I   L   
Sbjct:     1 MASSSSNSWRYDVFPSFRGEDVRNNFLSHLLKEFESKGIVTFRDDHIKRSHTIGHELRAA 60

Query:    61 XXXXXXXXXXFSEDYASSRWCLDEFAEILECKK 93
                       FSE+YASS WCLDE  EI++CK+
Sbjct:    61 IRESKISVVLFSENYASSSWCLDELIEIMKCKE 93

GO:0000166 "nucleotide binding" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM

GO:0006952 "defense response" evidence=IEA;ISS

GO:0007165 "signal transduction" evidence=IEA

GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA

GO:0043531 "ADP binding" evidence=IEA

GO:0005739 "mitochondrion" evidence=IDA

GO:0010193 "response to ozone" evidence=IEP

UNIPROTKB|Q40392 N "TMV resistance protein N" [Nicotiana glutinosa (taxid:35889)]

 Score = 212 (79.7 bits), Expect = 6.5e-16, P = 6.5e-16
 Identities = 46/94 (48%), Positives = 58/94 (61%)

Query:     1 MASFSRNNK-KYDVFVSFRGEDIRDNFTSHLYSALARQNIQTFIDDQ-LNRGDEISESLX 58
             MAS S +++  YDVF+SFRGED R  FTSHLY  L  + I+TF DD+ L  G  I   L 
Sbjct:     1 MASSSSSSRWSYDVFLSFRGEDTRKTFTSHLYEVLNDKGIKTFQDDKRLEYGATIPGELC 60

Query:    59 XXXXXXXXXXXXFSEDYASSRWCLDEFAEILECK 92
                         FSE+YA+SRWCL+E  +I+ECK
Sbjct:    61 KAIEESQFAIVVFSENYATSRWCLNELVKIMECK 94

GO:0005515 "protein binding" evidence=IPI

TAIR|locus:1006230150 AT2G20142 [Arabidopsis thaliana (taxid:3702)]

 Score = 197 (74.4 bits), Expect = 1.3e-15, P = 1.3e-15
 Identities = 39/84 (46%), Positives = 51/84 (60%)

Query:    10 KYDVFVSFRGEDIRDNFTSHLYSALARQNIQTFIDDQLNRGDEISESLXXXXXXXXXXXX 69
             K+DVF+SFR +D RDNF SHL   L R+ I+TF+ D+L   +   ESL            
Sbjct:     8 KHDVFISFRSKDTRDNFVSHLCGCLRRKRIKTFLYDELPADERYEESLKAIEVSKISVIV 67

Query:    70 XFSEDYASSRWCLDEFAEILECKK 93
              FSE++  SRWCLDE   IL+CK+
Sbjct:    68 -FSENFGDSRWCLDEVVAILKCKE 90

GO:0005622 "intracellular" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM

GO:0007165 "signal transduction" evidence=IEA

TAIR|locus:2167457 AT5G36930 [Arabidopsis thaliana (taxid:3702)]

 Score = 208 (78.3 bits), Expect = 1.8e-15, P = 1.8e-15
 Identities = 42/84 (50%), Positives = 51/84 (60%)

Query:    11 YDVFVSFRGEDIRDNFTSHLYSALARQNIQTFIDD-QLNRGDEISESLXXXXXXXXXXXX 69
             YDVFVSFRG D+R NF SHLY +L R  I TF+DD +L RG+ IS  L            
Sbjct:    17 YDVFVSFRGADVRKNFLSHLYDSLRRCGISTFMDDVELQRGEYISPELLNAIETSKILIV 76

Query:    70 XFSEDYASSRWCLDEFAEILECKK 93
               ++DYASS WCLDE   I++  K
Sbjct:    77 VLTKDYASSAWCLDELVHIMKSHK 100

GO:0005622 "intracellular" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM

GO:0006952 "defense response" evidence=IEA;ISS

GO:0007165 "signal transduction" evidence=IEA

GO:0043531 "ADP binding" evidence=IEA

TAIR|locus:2118106 AT4G12010 [Arabidopsis thaliana (taxid:3702)]

 Score = 207 (77.9 bits), Expect = 2.4e-15, P = 2.4e-15
 Identities = 42/92 (45%), Positives = 58/92 (63%)

Query:     1 MASFSRNNKKYDVFVSFRGEDIRDNFTSHLYSALARQNIQTFIDDQLNRGDEISESLXXX 60
             M S S ++ ++DVF+SFRG D R+NFT HL  AL  + I +FIDD+L RGD ++ +L   
Sbjct:     1 MESSSPSSAEFDVFLSFRGFDTRNNFTGHLQKALRLRGIDSFIDDRLRRGDNLT-ALFDR 59

Query:    61 XXXXXXXXXXFSEDYASSRWCLDEFAEILECK 92
                       FS +YA+S WCL E  +ILEC+
Sbjct:    60 IEKSKIAIIVFSTNYANSAWCLRELVKILECR 91

GO:0005634 "nucleus" evidence=ISM

GO:0006952 "defense response" evidence=IEA;ISS

GO:0007165 "signal transduction" evidence=IEA

GO:0043531 "ADP binding" evidence=IEA

GO:0006612 "protein targeting to membrane" evidence=RCA

GO:0009963 "positive regulation of flavonoid biosynthetic process" evidence=RCA

GO:0010363 "regulation of plant-type hypersensitive response" evidence=RCA

TAIR|locus:2155189 AT5G49140 [Arabidopsis thaliana (taxid:3702)]

 Score = 203 (76.5 bits), Expect = 4.8e-15, P = 4.8e-15
 Identities = 41/84 (48%), Positives = 48/84 (57%)

Query:    10 KYDVFVSFRGEDIRDNFTSHLYSALARQNIQTFIDDQLNRGDEISESLXXXXXXXXXXXX 69
             KYDVF SFRGED+R NF SHL      + I TF DD + R   I   L            
Sbjct:    14 KYDVFPSFRGEDVRGNFLSHLMKEFESKGIVTFKDDLIERSQTIGLELKEAVRQSKIFVV 73

Query:    70 XFSEDYASSRWCLDEFAEILECKK 93
              FS++YASS WCLDE  EIL+CK+
Sbjct:    74 IFSKNYASSSWCLDELVEILKCKE 97

GO:0005622 "intracellular" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM

GO:0006952 "defense response" evidence=IEA;ISS

GO:0007165 "signal transduction" evidence=IEA

GO:0043531 "ADP binding" evidence=IEA

TAIR|locus:2032733 TIR "toll/interleukin-1 receptor-like" [Arabidopsis thaliana (taxid:3702)]

 Score = 189 (71.6 bits), Expect = 6.9e-15, P = 6.9e-15
 Identities = 40/90 (44%), Positives = 50/90 (55%)

Query:     5 SRNNKKYDVFVSFRGEDIRDNFTSHLYSALARQNIQTFIDD-QLNRGDEISESLXXXXXX 63
             S    KYDVF+SFRG D R NF S LY  L R++I+TF DD +L  G   S  L      
Sbjct:     3 SHTATKYDVFLSFRGHDTRHNFISFLYKELVRRSIRTFKDDKELENGQRFSPELKSPIEV 62

Query:    64 XXXXXXXFSEDYASSRWCLDEFAEILECKK 93
                     SE+YA+S WCLDE   I++ +K
Sbjct:    63 SRFAVVVVSENYAASSWCLDELVTIMDFEK 92

GO:0005622 "intracellular" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM

GO:0006952 "defense response" evidence=ISS

GO:0007165 "signal transduction" evidence=IEA

GO:0009506 "plasmodesma" evidence=IDA

TAIR|locus:2032718 AT1G72910 [Arabidopsis thaliana (taxid:3702)]

 Score = 194 (73.4 bits), Expect = 7.2e-15, P = 7.2e-15
 Identities = 41/90 (45%), Positives = 50/90 (55%)

Query:     5 SRNNKKYDVFVSFRGEDIRDNFTSHLYSALARQNIQTFIDD-QLNRGDEISESLXXXXXX 63
             S    KYDVF+SFRG D R NF S LY  L R++I+TF DD +L  G  IS  L      
Sbjct:     3 SHTATKYDVFLSFRGHDTRQNFISFLYKELVRRSIRTFKDDKELENGQRISSELKRTIEV 62

Query:    64 XXXXXXXFSEDYASSRWCLDEFAEILECKK 93
                     SE YA+S WCLDE   I++ +K
Sbjct:    63 SRFAVVVVSETYAASSWCLDELVTIMDFEK 92

GO:0005622 "intracellular" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM

GO:0006952 "defense response" evidence=ISS

GO:0007165 "signal transduction" evidence=IEA

GO:0043531 "ADP binding" evidence=IEA

TAIR|locus:2153072 AT5G51630 [Arabidopsis thaliana (taxid:3702)]

 Score = 201 (75.8 bits), Expect = 1.1e-14, P = 1.1e-14
 Identities = 42/93 (45%), Positives = 53/93 (56%)

Query:     1 MASFSRNNKKYDVFVSFRGEDIRDNFTSHLYSALARQNIQTFIDDQLNRGDEISESLXXX 60
             MAS S  +  YDVF SF GED+R +F SHL   L R++I TFID+ + R   I+  L   
Sbjct:     1 MASSSSRSWTYDVFPSFSGEDVRKSFLSHLLKKLHRKSINTFIDNNIERSHAIAPDLLSA 60

Query:    61 XXXXXXXXXXFSEDYASSRWCLDEFAEILECKK 93
                       FS+ YASS WCL+E  EI +C K
Sbjct:    61 INNSMISIVVFSKKYASSTWCLNELVEIHKCYK 93

GO:0000166 "nucleotide binding" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM

GO:0006952 "defense response" evidence=IEA;ISS

GO:0007165 "signal transduction" evidence=IEA

GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA

GO:0043531 "ADP binding" evidence=IEA

TAIR|locus:2205824 AT1G27170 [Arabidopsis thaliana (taxid:3702)]

 Score = 199 (75.1 bits), Expect = 2.0e-14, P = 2.0e-14
 Identities = 40/84 (47%), Positives = 51/84 (60%)

Query:    10 KYDVFVSFRGEDIRDNFTSHLYSALARQNIQTFIDDQ-LNRGDEISESLXXXXXXXXXXX 68
             KYDVF+SFRG D RDNF  HLY AL +  ++ F D++ + RGDEIS SL           
Sbjct:    13 KYDVFLSFRGADTRDNFGDHLYKAL-KDKVRVFRDNEGMERGDEISSSLKAGMEDSAASV 71

Query:    69 XXFSEDYASSRWCLDEFAEILECK 92
                S +Y+ SRWCLDE A + + K
Sbjct:    72 IVISRNYSGSRWCLDELAMLCKMK 95

GO:0005622 "intracellular" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM

GO:0006952 "defense response" evidence=IEA;ISS

GO:0007165 "signal transduction" evidence=IEA

GO:0043531 "ADP binding" evidence=IEA

GO:0009507 "chloroplast" evidence=IDA

GO:0009506 "plasmodesma" evidence=IDA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: fgenesh4_pg.C_LG_XIX000637 tir-nbs-lrr resistance protein (1254 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	93
pfam01582	135	pfam01582, TIR, TIR domain	1e-26
smart00255	140	smart00255, TIR, Toll - interleukin 1 - resistance	8e-26
PLN03210	1153	PLN03210, PLN03210, Resistant to P	1e-25
PLN03194	187	PLN03194, PLN03194, putative disease resistance pr	3e-13
pfam13676	102	pfam13676, TIR_2, TIR domain	7e-13

>gnl|CDD|216585 pfam01582, TIR, TIR domain

 Score = 94.3 bits (235), Expect = 1e-26
 Identities = 40/82 (48%), Positives = 53/82 (64%), Gaps = 1/82 (1%)

Query: 13 VFVSFRGEDIRDNFTSHLYSALARQNIQTFIDD-QLNRGDEISESLVKAIKASAISVIIF 71
          VFVSF G+D RD F SHL   L  + I+  IDD     G+ I E+L +AI+ S  +++IF
Sbjct: 1  VFVSFSGKDDRDTFVSHLLKELEEKGIKLCIDDRDELPGESILENLFEAIEKSRRAIVIF 60

Query: 72 SEDYASSRWCLDEFAEILECKK 93
          S +YASS WCLDE  EI++C  
Sbjct: 61 SSNYASSEWCLDELVEIVKCAL 82

The Toll/interleukin-1 receptor (TIR) homology domain is an intracellular signalling domain found in MyD88, interleukin 1 receptor and the Toll receptor. It contains three highly-conserved regions, and mediates protein-protein interactions between the Toll-like receptors (TLRs) and signal-transduction components. TIR-like motifs are also found in plant proteins thought to be involved in resistance to disease. When activated, TIR domains recruit cytoplasmic adaptor proteins MyD88 and TOLLIP (Toll interacting protein). In turn, these associate with various kinases to set off signalling cascades. Length = 135

>gnl|CDD|214587 smart00255, TIR, Toll - interleukin 1 - resistance

 Score = 92.4 bits (230), Expect = 8e-26
 Identities = 35/85 (41%), Positives = 49/85 (57%), Gaps = 2/85 (2%)

Query: 10 KYDVFVSFRG-EDIRDNFTSHLYSALARQNIQTFIDDQLNRGDEISESLVKAIKASAISV 68
          +YDVF+S+ G ED+R+ F SHL   L    +  FIDD    G    E + +AI+ S I++
Sbjct: 1  EYDVFISYSGKEDVRNEFLSHLLEKLRGYGLCVFIDDFE-PGGGDLEEIDEAIEKSRIAI 59

Query: 69 IIFSEDYASSRWCLDEFAEILECKK 93
          ++ S +YA S WCLDE    LE   
Sbjct: 60 VVLSPNYAESEWCLDELVAALENAL 84

Length = 140

>gnl|CDD|215633 PLN03210, PLN03210, Resistant to P

 Score = 98.4 bits (245), Expect = 1e-25
 Identities = 42/92 (45%), Positives = 59/92 (64%)

Query: 2  ASFSRNNKKYDVFVSFRGEDIRDNFTSHLYSALARQNIQTFIDDQLNRGDEISESLVKAI 61
          +S S  N  YDVF SF GED+R  F SH    L R+ I  F D+++ R   +   L +AI
Sbjct: 4  SSSSSRNWVYDVFPSFSGEDVRITFLSHFLKELDRKLIIAFKDNEIERSQSLDPELKQAI 63

Query: 62 KASAISVIIFSEDYASSRWCLDEFAEILECKK 93
          + S I+V++FS++YASS WCL+E  EI+ CK+
Sbjct: 64 RDSRIAVVVFSKNYASSSWCLNELLEIVRCKE 95

syringae 6; Provisional. Length = 1153

>gnl|CDD|215626 PLN03194, PLN03194, putative disease resistance protein; Provisional

 Score = 61.4 bits (149), Expect = 3e-13
 Identities = 30/83 (36%), Positives = 50/83 (60%), Gaps = 1/83 (1%)

Query: 12  DVFVSFRGEDIRDNFTSHLYSALARQNIQTFIDDQ-LNRGDEISESLVKAIKASAISVII 70
           DVF++ RG D +    + LY  L+R N++ F+D++ +  GD++ + +  AI+   + V +
Sbjct: 28  DVFINHRGIDTKRTIATLLYDHLSRLNLRPFLDNKNMKPGDKLFDKINSAIRNCKVGVAV 87

Query: 71  FSEDYASSRWCLDEFAEILECKK 93
           FS  Y  S +CL E A I+E KK
Sbjct: 88  FSPRYCESYFCLHELALIMESKK 110

Length = 187

>gnl|CDD|222311 pfam13676, TIR_2, TIR domain

 Score = 58.4 bits (142), Expect = 7e-13
 Identities = 20/81 (24%), Positives = 42/81 (51%), Gaps = 2/81 (2%)

Query: 13 VFVSFRGEDIRDNFTSHLYSALARQNIQTFIDDQLNRGDEISESLVKAIKASAISVIIFS 72
          VF+S+   D    +   L  AL    I+ ++D  +  G++  + + +A++++ + +++ S
Sbjct: 1  VFISYASADRE--WAEWLADALEAAGIRVWLDWDIPPGEDWRDEIEEALRSADVVLVLLS 58

Query: 73 EDYASSRWCLDEFAEILECKK 93
            Y +S WC  E+   LE  K
Sbjct: 59 PAYLASPWCRAEWGAALERGK 79

This is a family of bacterial Toll-like receptors. Length = 102

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	93
PLN03194	187	putative disease resistance protein; Provisional	100.0
PLN03210	1153	Resistant to P. syringae 6; Provisional	99.94
PF01582	141	TIR: TIR domain; InterPro: IPR000157 In Drosophila	99.87
smart00255	140	TIR Toll - interleukin 1 - resistance.	99.86
PF13676	102	TIR_2: TIR domain; PDB: 3H16_B 3UB4_A 2Y92_A 3UB3_	99.82
KOG3678	832	consensus SARM protein (with sterile alpha and arm	99.26
PF08937	130	DUF1863: MTH538 TIR-like domain (DUF1863); InterPr	99.08
PF08357	150	SEFIR: SEFIR domain; InterPro: IPR013568 This doma	98.76
PF10137	125	TIR-like: Predicted nucleotide-binding protein con	97.92
PF13271	83	DUF4062: Domain of unknown function (DUF4062)	96.33
PF05014	113	Nuc_deoxyrib_tr: Nucleoside 2-deoxyribosyltransfer	95.73
COG4271	233	Predicted nucleotide-binding protein containing TI	93.93
COG4916	329	Uncharacterized protein containing a TIR (Toll-Int	93.39
cd00860	91	ThrRS_anticodon ThrRS Threonyl-anticodon binding d	92.43
COG0400	207	Predicted esterase [General function prediction on	90.38
cd00738	94	HGTP_anticodon HGTP anticodon binding domain, as f	88.51
PF03720	106	UDPG_MGDP_dh_C: UDP-glucose/GDP-mannose dehydrogen	86.99
PF14359	92	DUF4406: Domain of unknown function (DUF4406)	86.66
PF03129	94	HGTP_anticodon: Anticodon binding domain; InterPro	85.99
cd00858	121	GlyRS_anticodon GlyRS Glycyl-anticodon binding dom	85.94
cd02042	104	ParA ParA and ParB of Caulobacter crescentus belon	83.08
cd02426	128	Pol_gamma_b_Cterm C-terminal domain of mitochondri	83.03

>PLN03194 putative disease resistance protein; Provisional

Probab=100.00  E-value=1e-32  Score=182.12  Aligned_cols=91  Identities=36%  Similarity=0.661  Sum_probs=87.3

Q ss_pred             CCCCCCCcccEEEecccCcCChhHHHHHHHHHhcCCceEEeec-cCCCCcchHHHHHHHHHhCCEEEEEEcCCCCCcHHH
Q 037311            3 SFSRNNKKYDVFVSFRGEDIRDNFTSHLYSALARQNIQTFIDD-QLNRGDEISESLVKAIKASAISVIIFSEDYASSRWC   81 (93)
Q Consensus         3 ~s~~~~~~ydVFISy~~~D~~~~~~~~L~~~L~~~gi~v~~d~-~~~~G~~~~~~i~~~i~~s~~~i~v~S~~y~~S~wc   81 (93)
                      +|++..++|||||||+++|+|++|+.+|+.+|+++||++|+|+ ++++|+.+.+.|.++|++|++.|+|+||+|+.|+||
T Consensus        19 ~~~~~~~~yDVFISFrG~DtR~~FvshL~~aL~~~GI~vF~D~~el~~G~~i~~~L~~AIeeSri~IvVfS~~Ya~S~WC   98 (187)
T PLN03194         19 SSSSSAKPCDVFINHRGIDTKRTIATLLYDHLSRLNLRPFLDNKNMKPGDKLFDKINSAIRNCKVGVAVFSPRYCESYFC   98 (187)
T ss_pred             cCCCCCCCCcEEEeCCCccccccHHHHHHHHHHHCCCEEEEcCccccCCCcHHHHHHHHHHhCeEEEEEECCCcccchhH
Confidence            3678899999999999999999999999999999999999999 999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhhcC
Q 037311           82 LDEFAEILECKK   93 (93)
Q Consensus        82 ~~El~~~~~~~~   93 (93)
                      ++||+.+++|.+
T Consensus        99 LdEL~~I~e~~~  110 (187)
T PLN03194         99 LHELALIMESKK  110 (187)
T ss_pred             HHHHHHHHHcCC
Confidence            999999999853

>PLN03210 Resistant to P

Probab=99.94  E-value=3.4e-27  Score=188.16  Aligned_cols=93  Identities=47%  Similarity=0.811  Sum_probs=88.7

Q ss_pred             CCC--CCCCCCcccEEEecccCcCChhHHHHHHHHHhcCCceEEeeccCCCCcchHHHHHHHHHhCCEEEEEEcCCCCCc
Q 037311            1 MAS--FSRNNKKYDVFVSFRGEDIRDNFTSHLYSALARQNIQTFIDDQLNRGDEISESLVKAIKASAISVIIFSEDYASS   78 (93)
Q Consensus         1 m~~--s~~~~~~ydVFISy~~~D~~~~~~~~L~~~L~~~gi~v~~d~~~~~G~~~~~~i~~~i~~s~~~i~v~S~~y~~S   78 (93)
                      ||+  |++..++|||||||+++|+|+.|++||+.+|.++||++|.|++++.|+.+..++.+||++|++.|+|+|++|+.|
T Consensus         1 ~~~~~~~~~~~~~~vf~sfrg~d~r~~f~~hl~~~l~~~~i~~f~d~~~~~g~~~~~~l~~~i~~s~~~ivv~s~~ya~s   80 (1153)
T PLN03210          1 MASSSSSSRNWVYDVFPSFSGEDVRITFLSHFLKELDRKLIIAFKDNEIERSQSLDPELKQAIRDSRIAVVVFSKNYASS   80 (1153)
T ss_pred             CCCCCCCCCCCCCcEEeeCCCcccccCHHHHHHHHHHHCCCeEEccCCccCCCcccHHHHHHHHhCeEEEEEecCCcccc
Confidence            565  567899999999999999999999999999999999999988999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHhhcC
Q 037311           79 RWCLDEFAEILECKK   93 (93)
Q Consensus        79 ~wc~~El~~~~~~~~   93 (93)
                      .||++||+++++|++
T Consensus        81 ~wcl~el~~i~~~~~   95 (1153)
T PLN03210         81 SWCLNELLEIVRCKE   95 (1153)
T ss_pred             hHHHHHHHHHHHhhh
Confidence            999999999999974

syringae 6; Provisional

>PF01582 TIR: TIR domain; InterPro: IPR000157 In Drosophila melanogaster the Toll protein is involved in establishment of dorso-ventral polarity in the embryo

Probab=99.87  E-value=3.7e-23  Score=131.44  Aligned_cols=80  Identities=35%  Similarity=0.652  Sum_probs=73.1

Q ss_pred             EEEecccCcCChhHHHHHHHHHhcC--CceEEeec-cCCCCcchHHHHHHHHHhCCEEEEEEcCCCCCcHHHHHHHHHHH
Q 037311           13 VFVSFRGEDIRDNFTSHLYSALARQ--NIQTFIDD-QLNRGDEISESLVKAIKASAISVIIFSEDYASSRWCLDEFAEIL   89 (93)
Q Consensus        13 VFISy~~~D~~~~~~~~L~~~L~~~--gi~v~~d~-~~~~G~~~~~~i~~~i~~s~~~i~v~S~~y~~S~wc~~El~~~~   89 (93)
                      |||||++.+.++.|+.+|..+|+++  |+++|+++ |+.+|..+.++|.++|++|+++|+|+|++|+.|+||+.|+..|+
T Consensus         1 vfisy~~~~d~~~~~~~L~~~Le~~~~g~~~c~~~rD~~~G~~~~~~i~~~i~~Sr~~I~VlS~~y~~s~wc~~el~~a~   80 (141)
T PF01582_consen    1 VFISYSGKDDREWFVSHLLPELEERPYGYKLCLDERDFLPGESILDNIQEAIERSRRTIVVLSRNYLSSEWCLFELQEAL   80 (141)
T ss_dssp             EEEEE-GHHGHHHHHHCHHHHHHCTSSTS-EEEHHHCTSSSSCHHHHHHHHHHTEEEEEEEESHHHHHHTHHHHHHHHHH
T ss_pred             cEEEeCCCCcHHHHHHHHHHHHHhCCCCeEEEEechhhcccccccchhhHhhhhceeeEEEeecccccccchhhhhhhhh
Confidence            8999999433468999999999999  99999999 99999999999999999999999999999999999999999999


Q ss_pred             hhc
Q 037311           90 ECK   92 (93)
Q Consensus        90 ~~~   92 (93)
                      ++.
T Consensus        81 ~~~   83 (141)
T PF01582_consen   81 ERL   83 (141)
T ss_dssp             HHH
T ss_pred             hhc
Confidence            874

In addition, members of the Toll family play a key role in innate antibacterial and antifungal immunity in insects as well as in mammals. These proteins are type-I transmembrane receptors that share an intracellular 200 residue domain with the interleukin-1 receptor (IL-1R), the Toll/IL-1R homologous region (TIR). The similarity between Toll-like receptors (LTRs) and IL-1R is not restricted to sequence homology since these proteins also share a similar signalling pathway. They both induce the activation of a Rel type transcription factor via an adaptor protein and a protein kinase []. Interestingly, MyD88, a cytoplasmic adaptor protein found in mammals, contains a TIR domain associated to a DEATH domain (see IPR000488 from INTERPRO) [, , ]. Besides the mammalian and Drosophila melanogaster proteins, a TIR domain is also found in a number of plant proteins implicated in host defence []. As MyD88, these proteins are cytoplasmic. Site directed mutagenesis and deletion analysis have shown that the TIR domain is essential for Toll and IL-1R activities. Sequence analysis have revealed the presence of three highly conserved regions among the different members of the family: box 1 (FDAFISY), box 2 (GYKLC-RD-PG), and box 3 (a conserved W surrounded by basic residues). It has been proposed that boxes 1 and 2 are involved in the binding of proteins involved in signalling, whereas box 3 is primarily involved in directing localization of receptor, perhaps through interactions with cytoskeletal elements [].; GO: 0005515 protein binding, 0007165 signal transduction, 0005622 intracellular; PDB: 3J0A_A 2J67_B 3JRN_A 1FYV_A 1O77_D 1FYX_A 1FYW_A 3OZI_B 1T3G_B 2JS7_A ....

>smart00255 TIR Toll - interleukin 1 - resistance

Probab=99.86  E-value=1.9e-21  Score=122.34  Aligned_cols=81  Identities=42%  Similarity=0.795  Sum_probs=69.8

Q ss_pred             cccEEEeccc-CcCChhHHHHHHHHHhcCCceEEeeccCCCCcchHHHHHHHHHhCCEEEEEEcCCCCCcHHHHHHHHHH
Q 037311           10 KYDVFVSFRG-EDIRDNFTSHLYSALARQNIQTFIDDQLNRGDEISESLVKAIKASAISVIIFSEDYASSRWCLDEFAEI   88 (93)
Q Consensus        10 ~ydVFISy~~-~D~~~~~~~~L~~~L~~~gi~v~~d~~~~~G~~~~~~i~~~i~~s~~~i~v~S~~y~~S~wc~~El~~~   88 (93)
                      .|||||||++ ++..+.|+.+|...|...|+.+|.|+....|..+. +|.++|++|+++|+|+||+|+.|+||..|+..+
T Consensus         1 ~~dvFISys~~~~~~~~~v~~L~~~l~~~~~~v~~d~~~~~~~~~~-~i~~~i~~s~~~i~vlS~~~~~S~w~~~E~~~a   79 (140)
T smart00255        1 EYDVFISYSGKEDVRNEFLSHLLEKLRGYGLCVFIDDFEPGGGDLE-EIDEAIEKSRIAIVVLSPNYAESEWCLDELVAA   79 (140)
T ss_pred             CCeEEEECCCCHHHHHHHHHHHHHHhhcCCcEEEecCcccccchHH-HHHHHHHHCcEEEEEECcccccChhHHHHHHHH
Confidence            5899999999 34457899999999999999999997333333333 999999999999999999999999999999999


Q ss_pred             Hhh
Q 037311           89 LEC   91 (93)
Q Consensus        89 ~~~   91 (93)
                      +++
T Consensus        80 ~~~   82 (140)
T smart00255       80 LEN   82 (140)
T ss_pred             HHH
Confidence            875

>PF13676 TIR_2: TIR domain; PDB: 3H16_B 3UB4_A 2Y92_A 3UB3_A 3UB2_A

Probab=99.82  E-value=1.1e-21  Score=118.23  Aligned_cols=77  Identities=29%  Similarity=0.576  Sum_probs=67.9

Q ss_pred             EEEecccCcCChhHHHHHHHHHhcCCceEEeeccCCCCcchHHHHHHHHHhCCEEEEEEcCCCCCcHHHHHHHHHHHhh
Q 037311           13 VFVSFRGEDIRDNFTSHLYSALARQNIQTFIDDQLNRGDEISESLVKAIKASAISVIIFSEDYASSRWCLDEFAEILEC   91 (93)
Q Consensus        13 VFISy~~~D~~~~~~~~L~~~L~~~gi~v~~d~~~~~G~~~~~~i~~~i~~s~~~i~v~S~~y~~S~wc~~El~~~~~~   91 (93)
                      |||||+++|.  .++..|...|++.|+++|+|.++.+|+.+.+.|.++|++|+.+|+++||+|+.|+||..|+..|.+.
T Consensus         1 VFIS~~~~D~--~~a~~l~~~L~~~g~~v~~d~~~~~g~~~~~~i~~~i~~s~~~i~~~S~~~~~s~~~~~E~~~a~~~   77 (102)
T PF13676_consen    1 VFISYSSEDR--EFAERLAERLESAGIRVFLDRDIPPGEDWREEIERAIERSDCVIVLLSPNYLKSPWCRFELGAAWKR   77 (102)
T ss_dssp             EEEEEEGGGC--CCHHHHHHHHHHTT--EE-GGEE-TTS-HHCCCHHCCTTEEEEEEEEEHHHHCTHHHHHHHHHHHCT
T ss_pred             eEEEecCCcH--HHHHHHHHHHhhcCCEEEEEEeCCCCCCHHHHHHHHHHhCCEEEEEECcccccChHHHHHHHHHHHC
Confidence            8999999994  6999999999999999999999999999999999999999999999999999999999999998653

>KOG3678 consensus SARM protein (with sterile alpha and armadillo motifs) [Extracellular structures]

Probab=99.26  E-value=2.2e-11  Score=90.82  Aligned_cols=85  Identities=26%  Similarity=0.445  Sum_probs=73.9

Q ss_pred             CCCcccEEEecccCcCChhHHHHHHHHHhcCCceEEeec-cCCCCcchHHHHHHHHHhCCEEEEEEcCCCCC--------
Q 037311            7 NNKKYDVFVSFRGEDIRDNFTSHLYSALARQNIQTFIDD-QLNRGDEISESLVKAIKASAISVIIFSEDYAS--------   77 (93)
Q Consensus         7 ~~~~ydVFISy~~~D~~~~~~~~L~~~L~~~gi~v~~d~-~~~~G~~~~~~i~~~i~~s~~~i~v~S~~y~~--------   77 (93)
                      -.++.||||||++.- ...+++-|+-.|.-+|++||+|. .+..|. +.+.+.+.|..++.+|+|+||+.+.        
T Consensus       609 ~skq~DVFISYRRst-GnQLASLiKV~LQL~GyrVFIDVdKL~AGK-FdssLlkni~aAkhFiLVLtP~sLDr~lnD~nC  686 (832)
T KOG3678|consen  609 LSKQIDVFISYRRST-GNQLASLIKVLLQLRGYRVFIDVDKLYAGK-FDSSLLKNIQAAKHFILVLTPNSLDRLLNDDNC  686 (832)
T ss_pred             ccCCcceEEEeeccc-cHHHHHHHHHHHHhcCceEEEehhhhhccc-ccHHHHHHHHhhheeEEEeCcchHHHHhccccH
Confidence            457899999998864 36788888889999999999999 888884 6678999999999999999999763        


Q ss_pred             cHHHHHHHHHHHhhcC
Q 037311           78 SRWCLDEFAEILECKK   93 (93)
Q Consensus        78 S~wc~~El~~~~~~~~   93 (93)
                      -+|...||..+++|+|
T Consensus       687 eDWVHKEl~~Afe~~K  702 (832)
T KOG3678|consen  687 EDWVHKELKCAFEHQK  702 (832)
T ss_pred             HHHHHHHHHHHHHhcC
Confidence            4788999999999986

>PF08937 DUF1863: MTH538 TIR-like domain (DUF1863); InterPro: IPR015032 This protein adopts the flavodoxin fold, that is, five parallel beta-strands and four helical segments

Probab=99.08  E-value=4e-10  Score=70.83  Aligned_cols=81  Identities=21%  Similarity=0.340  Sum_probs=43.7

Q ss_pred             ccEEEecccCcCChhHHHHHHHHHhcC-------CceE----------Eeec-cCCCCcchHHHHHHHHHhCCEEEEEEc
Q 037311           11 YDVFVSFRGEDIRDNFTSHLYSALARQ-------NIQT----------FIDD-QLNRGDEISESLVKAIKASAISVIIFS   72 (93)
Q Consensus        11 ydVFISy~~~D~~~~~~~~L~~~L~~~-------gi~v----------~~d~-~~~~G~~~~~~i~~~i~~s~~~i~v~S   72 (93)
                      |+|||||.+.|.. ..+..|...+...       .+..          ..+. +....+.|...|.+.|+.|+++|++++
T Consensus         1 ~~vFIS~~~~d~~-~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~I~~~i~~s~~~IVLig   79 (130)
T PF08937_consen    1 YKVFISYSHDDDD-WYYDQLKEWLENSYEIPRDKNFDFRFYDVSKWEPIRSRDDDSSSEYIKRKIRERIKNSSVTIVLIG   79 (130)
T ss_dssp             ----------THH--HHHHHHHHHHH-------TTSS--BT---TTT---TTS---TTTTHHHHHHHHHHTEEEEEEE--
T ss_pred             CCccccccccCcH-HHHHHHHHHhccccccccccccccCcccccccCcccCccccchHHHHHHHHHHHHhcCCEEEEEeC
Confidence            5799999998842 3667777766652       2211          1122 223345789999999999999999999


Q ss_pred             CCCCCcHHHHHHHHHHHhhc
Q 037311           73 EDYASSRWCLDEFAEILECK   92 (93)
Q Consensus        73 ~~y~~S~wc~~El~~~~~~~   92 (93)
                      ++-..|+|+..|+..+++..
T Consensus        80 ~~T~~s~wV~~EI~~A~~~~   99 (130)
T PF08937_consen   80 PNTAKSKWVNWEIEYALKKG   99 (130)
T ss_dssp             TT----HHHHHHHHHHTTT-
T ss_pred             CCcccCcHHHHHHHHHHHCC
Confidence            99999999999999998743

The structure is a three-layer sandwich with alpha-1 and alpha-4 on one side of the beta-sheet, and alpha-2 and alpha-3 on the other side. Probable role in signal transduction as a phosphorylation-independent conformational switch protein []. This domain is similar to the TIR domain [].; PDB: 3HYN_A.

>PF08357 SEFIR: SEFIR domain; InterPro: IPR013568 This domain is found in IL17 receptors (IL17Rs, e

Probab=98.76  E-value=2.8e-08  Score=63.38  Aligned_cols=64  Identities=20%  Similarity=0.378  Sum_probs=55.0

Q ss_pred             cEEEecccCcC-ChhHHHHHHHHHhcC-CceEEeec-cCCC--CcchHHHHHHHHHhCCEEEEEEcCCC
Q 037311           12 DVFVSFRGEDI-RDNFTSHLYSALARQ-NIQTFIDD-QLNR--GDEISESLVKAIKASAISVIIFSEDY   75 (93)
Q Consensus        12 dVFISy~~~D~-~~~~~~~L~~~L~~~-gi~v~~d~-~~~~--G~~~~~~i~~~i~~s~~~i~v~S~~y   75 (93)
                      -|||||++... ....|..|.+.|++. |+.|.+|. +...  +..+..-+.+.+++++.+|+|+||.+
T Consensus         2 kVfI~Ys~d~~~h~~~V~~la~~L~~~~g~~V~lD~~~~~~i~~~g~~~W~~~~~~~ad~Vliv~S~~~   70 (150)
T PF08357_consen    2 KVFISYSHDSEEHKEWVLALAEFLRQNCGIDVILDQWELNEIARQGPPRWMERQIREADKVLIVCSPGY   70 (150)
T ss_pred             eEEEEeCCCCHHHHHHHHHHHHHHHhccCCceeecHHhhcccccCCHHHHHHHHHhcCCEEEEEeccch
Confidence            49999999543 246789999999999 99999999 7744  77888899999999999999999765

g. Q60943 from SWISSPROT) and SEF proteins (e.g. Q8QHJ9 from SWISSPROT). The latter are feedback inhibitors of FGF signalling and are also thought to be receptors. Due to its similarity to the TIR domain (IPR000157 from INTERPRO), the SEFIR region is thought to be involved in homotypic interactions with other SEFIR/TIR-domain-containing proteins. Thus, SEFs and IL17Rs may be involved in TOLL/IL1R-like signalling pathways [].

>PF10137 TIR-like: Predicted nucleotide-binding protein containing TIR-like domain; InterPro: IPR019302 This entry represents a TIR-like domain found in a family of prokaryotic predicted nucleotide-binding proteins

Probab=97.92  E-value=8.6e-05  Score=46.72  Aligned_cols=76  Identities=20%  Similarity=0.271  Sum_probs=59.2

Q ss_pred             cEEEecccCcCChhHHHHHHHHHhcCCceEEeec-cCCCCcchHHHHHHHHHhCCEEEEEEcCC-------------CCC
Q 037311           12 DVFVSFRGEDIRDNFTSHLYSALARQNIQTFIDD-QLNRGDEISESLVKAIKASAISVIIFSED-------------YAS   77 (93)
Q Consensus        12 dVFISy~~~D~~~~~~~~L~~~L~~~gi~v~~d~-~~~~G~~~~~~i~~~i~~s~~~i~v~S~~-------------y~~   77 (93)
                      .|||.|+ +|  ...+..+...|+..|+.+..=. ....|..+.+.+.+.+.+++..|+++||+             ...
T Consensus         1 kVFIvhg-~~--~~~~~~v~~~L~~~~~ep~i~~~~~~~g~tiie~le~~~~~~~faIvl~TpDD~~~~~~~~~~~~~~a   77 (125)
T PF10137_consen    1 KVFIVHG-RD--LAAAEAVERFLEKLGLEPIIWHEQPNLGQTIIEKLEEAADSVDFAIVLFTPDDIGYSRGEEEDLQPRA   77 (125)
T ss_pred             CEEEEeC-CC--HHHHHHHHHHHHhCCCceEEeecCCCCCCchHHHHHHHhccCCEEEEEEcccccccccCCcccccccc
Confidence            4899998 44  2578889889998888766555 66999999999999999999999999985             223


Q ss_pred             cHHHHHHHHHHHh
Q 037311           78 SRWCLDEFAEILE   90 (93)
Q Consensus        78 S~wc~~El~~~~~   90 (93)
                      .+....|+..++.
T Consensus        78 R~NVifE~G~f~g   90 (125)
T PF10137_consen   78 RQNVIFELGLFIG   90 (125)
T ss_pred             ccceeehhhHHHh
Confidence            3455667666553

Their exact function has not, as yet, been defined.

>PF13271 DUF4062: Domain of unknown function (DUF4062)

Probab=96.33  E-value=0.041  Score=31.84  Aligned_cols=65  Identities=20%  Similarity=0.261  Sum_probs=47.6

Q ss_pred             cEEEecccCcCChhHHHHHHHHHhcCCceEEeeccC-CCCcchHHHHHHHHHhCCEEEEEEcCCCCC
Q 037311           12 DVFVSFRGEDIRDNFTSHLYSALARQNIQTFIDDQL-NRGDEISESLVKAIKASAISVIIFSEDYAS   77 (93)
Q Consensus        12 dVFISy~~~D~~~~~~~~L~~~L~~~gi~v~~d~~~-~~G~~~~~~i~~~i~~s~~~i~v~S~~y~~   77 (93)
                      .||||=.-.|.. .--..|.+.+.+.|.....-+.+ ..+....+.+.+.|++|++.|.++-..|-.
T Consensus         1 rVFiSSt~~Dl~-~eR~~l~~~i~~~~~~~~~~e~~~a~~~~~~~~cl~~v~~cDifI~ilG~rYG~   66 (83)
T PF13271_consen    1 RVFISSTFRDLK-EERDALIEAIRRLGCEPVGMEFFPASDQSPLEICLKEVDECDIFILILGNRYGS   66 (83)
T ss_pred             CEEEecChhhHH-HHHHHHHHHHHHCCCeeeeeeeecCCCCCHHHHHHHHHhhCCEEEEeeccccCC
Confidence            389998877752 44467777777777765554422 235666778999999999999999988853

>PF05014 Nuc_deoxyrib_tr: Nucleoside 2-deoxyribosyltransferase; InterPro: IPR007710 Nucleoside 2-deoxyribosyltransferase (2

Probab=95.73  E-value=0.16  Score=30.70  Aligned_cols=68  Identities=15%  Similarity=0.105  Sum_probs=49.1

Q ss_pred             hhHHHHHHHHHhcCCceEEeec--cCC---CC----cchHHHHHHHHHhCCEEEEEEcCCCCCcHHHHHHHHHHHhhc
Q 037311           24 DNFTSHLYSALARQNIQTFIDD--QLN---RG----DEISESLVKAIKASAISVIIFSEDYASSRWCLDEFAEILECK   92 (93)
Q Consensus        24 ~~~~~~L~~~L~~~gi~v~~d~--~~~---~G----~~~~~~i~~~i~~s~~~i~v~S~~y~~S~wc~~El~~~~~~~   92 (93)
                      ..+...+.+.|++.|+.++...  +..   .+    ..+.+.-.++|++|+++|+++++.- .++=+..|+..|....
T Consensus        13 ~~~~~~~~~~L~~~g~~v~~P~~~~~~~~~~~~~~~~~i~~~d~~~i~~~D~via~l~~~~-~d~Gt~~ElG~A~alg   89 (113)
T PF05014_consen   13 KARVERLREALEKNGFEVYSPQDNDENDEEDSQEWAREIFERDLEGIRECDIVIANLDGFR-PDSGTAFELGYAYALG   89 (113)
T ss_dssp             HHHHHHHHHHHHTTTTEEEGGCTCSSS--TTSHHCHHHHHHHHHHHHHHSSEEEEEECSSS---HHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHhCCCEEEeccccccccccccchHHHHHHHHHHHHHHHCCEEEEECCCCC-CCCcHHHHHHHHHHCC
Confidence            4678899999999999888765  221   12    2344455668999999999998755 6677888898886543

4.2.6 from EC) catalyses the cleavage of the glycosidic bonds of 2-deoxyribonucleosides. Nucleoside 2-deoxyribosyltransferases can be divided into two groups based on their substrate specificity: class I enzymes are specific for the transfer of deoxyribose between two purines, while class II enzymes will transfer the deoxyribose between either purines or pyrimidines. The structure of the class I [] and class II [] enzymes are very similar. In class I enzymes, the purine base shields the active site from solvent, which the smaller pyrimidine base cannot do, while in class II enzymes the active site is shielded by a loop (residues 48-62). Both classes of enzymes are found in various Lactobacillus species and participate in nucleoside recycling in these microorganisms. This entry represents both classes of enzymes.; GO: 0050144 nucleoside deoxyribosyltransferase activity, 0070694 deoxyribonucleoside 5'-monophosphate N-glycosidase activity, 0009159 deoxyribonucleoside monophosphate catabolic process; PDB: 1S2L_A 1S2D_C 1S2I_A 1S3F_B 1S2G_C 2A0K_A 2F67_A 2F64_B 2F62_A 2F2T_A ....

>COG4271 Predicted nucleotide-binding protein containing TIR -like domain [Transcription]

Probab=93.93  E-value=0.44  Score=32.56  Aligned_cols=60  Identities=23%  Similarity=0.315  Sum_probs=46.6

Q ss_pred             cEEEecccCcCChhHHHHHHHHHh-cCCc-eEEeeccCCCCcchHHHHHHHHHhCCEEEEEEcCCC
Q 037311           12 DVFVSFRGEDIRDNFTSHLYSALA-RQNI-QTFIDDQLNRGDEISESLVKAIKASAISVIIFSEDY   75 (93)
Q Consensus        12 dVFISy~~~D~~~~~~~~L~~~L~-~~gi-~v~~d~~~~~G~~~~~~i~~~i~~s~~~i~v~S~~y   75 (93)
                      .|||-|++.    ..+.....+|+ +-.. .+|.|.-+..|..+.+.+.+.+.+++..|++.+|+=
T Consensus        84 kvFvv~ghd----~iArael~allrd~~l~~vi~d~~~~~g~~ile~lek~i~~v~FAi~latPDD  145 (233)
T COG4271          84 KVFVVSGHD----AIARAELEALLRDWKLEPVILDGLFSEGQTILESLEKYIAEVKFAIVLATPDD  145 (233)
T ss_pred             eEEEEeccH----HHHHHHHHHHhhccccceEEecCcccccHHHHHHHHHHhhhceEEEEEecCcc
Confidence            899999774    35555555555 4344 466665778899999999999999999999999983

>COG4916 Uncharacterized protein containing a TIR (Toll-Interleukin 1-resistance) domain [Function unknown]

Probab=93.39  E-value=0.08  Score=37.45  Aligned_cols=81  Identities=20%  Similarity=0.237  Sum_probs=58.5

Q ss_pred             CCCCcccEEEecccCcCChhHHHHHHHHHhc--CCceEEeec----cCCCCcchHHHHHHHHH-hCCEEEEEEcCCCCCc
Q 037311            6 RNNKKYDVFVSFRGEDIRDNFTSHLYSALAR--QNIQTFIDD----QLNRGDEISESLVKAIK-ASAISVIIFSEDYASS   78 (93)
Q Consensus         6 ~~~~~ydVFISy~~~D~~~~~~~~L~~~L~~--~gi~v~~d~----~~~~G~~~~~~i~~~i~-~s~~~i~v~S~~y~~S   78 (93)
                      ...+.||+=+||.++-  +.+|+.....++.  ..+..|.|-    .+.+| ++.+.+...-+ .|+..++....+|..-
T Consensus       173 ~~~~~~DiG~SFaGEA--R~LVEqV~~E~~~~~~p~~~FYD~~~~~~L~~~-sL~~~L~~~Y~~rC~~~~VF~~~~Y~~K  249 (329)
T COG4916         173 SSEKPVDSGISFAGEA--RNLVEQVQTEHSGLDIPTRRFYDLLVAHPLYPG-SLVSTLDPGYDIRCVVTTVFNTGSYICK  249 (329)
T ss_pred             ccccccceeeEeehhh--hhHHHHHHHhhhcccCCceeeeechhhccccCc-cHHHhcccccCceEEEEEEEeCCceEEe
Confidence            4568899999999975  3699888888884  456677774    33344 34434444433 4778888889999999


Q ss_pred             HHHHHHHHHHH
Q 037311           79 RWCLDEFAEIL   89 (93)
Q Consensus        79 ~wc~~El~~~~   89 (93)
                      .||.-|...+-
T Consensus       250 ~~c~~E~~~~r  260 (329)
T COG4916         250 STCHIEGLEGR  260 (329)
T ss_pred             eeeccchhhcc
Confidence            99999876653

>cd00860 ThrRS_anticodon ThrRS Threonyl-anticodon binding domain

Probab=92.43  E-value=1.1  Score=25.38  Aligned_cols=60  Identities=10%  Similarity=0.180  Sum_probs=38.3

Q ss_pred             ccEEEecccCcCChhHHHHHHHHHhcCCceEEeeccCCCCcchHHHHHHHHHhCCEEEEEEcCC
Q 037311           11 YDVFVSFRGEDIRDNFTSHLYSALARQNIQTFIDDQLNRGDEISESLVKAIKASAISVIIFSED   74 (93)
Q Consensus        11 ydVFISy~~~D~~~~~~~~L~~~L~~~gi~v~~d~~~~~G~~~~~~i~~~i~~s~~~i~v~S~~   74 (93)
                      ++|+|.....+. ...+..+...|++.|+++-+|.  . +..+...+..+-+.--..++++.++
T Consensus         2 ~~v~ii~~~~~~-~~~a~~~~~~Lr~~g~~v~~d~--~-~~~~~~~~~~a~~~g~~~~iiig~~   61 (91)
T cd00860           2 VQVVVIPVTDEH-LDYAKEVAKKLSDAGIRVEVDL--R-NEKLGKKIREAQLQKIPYILVVGDK   61 (91)
T ss_pred             eEEEEEeeCchH-HHHHHHHHHHHHHCCCEEEEEC--C-CCCHHHHHHHHHHcCCCEEEEECcc
Confidence            677776655433 3577789999999999999875  1 2345556666654444445555543

ThrRS belongs to class II aminoacyl-tRNA synthetases (aaRS). This alignment contains the anticodon binding domain, which is responsible for specificity in tRNA-binding, so that the activated amino acid is transferred to a ribose 3' OH group of the appropriate tRNA only.

>COG0400 Predicted esterase [General function prediction only]

Probab=90.38  E-value=1.4  Score=29.93  Aligned_cols=58  Identities=16%  Similarity=0.106  Sum_probs=45.4

Q ss_pred             CCCCCcccEEEecccCcC--ChhHHHHHHHHHhcCCceEEeeccCCCCcchHHHHHHHHHh
Q 037311            5 SRNNKKYDVFVSFRGEDI--RDNFTSHLYSALARQNIQTFIDDQLNRGDEISESLVKAIKA   63 (93)
Q Consensus         5 ~~~~~~ydVFISy~~~D~--~~~~~~~L~~~L~~~gi~v~~d~~~~~G~~~~~~i~~~i~~   63 (93)
                      .++.....|||+|...|.  ....+.+|.+.|+..|..|.... .+.|-.+..+-.+.+++
T Consensus       141 ~~~~~~~pill~hG~~Dpvvp~~~~~~l~~~l~~~g~~v~~~~-~~~GH~i~~e~~~~~~~  200 (207)
T COG0400         141 LPDLAGTPILLSHGTEDPVVPLALAEALAEYLTASGADVEVRW-HEGGHEIPPEELEAARS  200 (207)
T ss_pred             ccccCCCeEEEeccCcCCccCHHHHHHHHHHHHHcCCCEEEEE-ecCCCcCCHHHHHHHHH
Confidence            456788999999999987  35677899999999999999885 33777777666655543

>cd00738 HGTP_anticodon HGTP anticodon binding domain, as found at the C-terminus of histidyl, glycyl, threonyl and prolyl tRNA synthetases, which are classified as a group of class II aminoacyl-tRNA synthetases (aaRS)

Probab=88.51  E-value=3  Score=23.54  Aligned_cols=61  Identities=21%  Similarity=0.295  Sum_probs=39.0

Q ss_pred             ccEEEecccC---cCChhHHHHHHHHHhcCCceEEeeccCCCCcchHHHHHHHHHhCCEEEEEEcCCC
Q 037311           11 YDVFVSFRGE---DIRDNFTSHLYSALARQNIQTFIDDQLNRGDEISESLVKAIKASAISVIIFSEDY   75 (93)
Q Consensus        11 ydVFISy~~~---D~~~~~~~~L~~~L~~~gi~v~~d~~~~~G~~~~~~i~~~i~~s~~~i~v~S~~y   75 (93)
                      ++|+|-....   .. ...+..+...|++.|+++-++.   .+..+...+..+-+.--..++++.++-
T Consensus         2 ~~v~ii~~~~~~~~~-~~~a~~~~~~Lr~~g~~v~~~~---~~~~~~k~~~~a~~~g~~~~iiig~~e   65 (94)
T cd00738           2 IDVAIVPLTDPRVEA-REYAQKLLNALLANGIRVLYDD---RERKIGKKFREADLRGVPFAVVVGEDE   65 (94)
T ss_pred             eEEEEEECCCCcHHH-HHHHHHHHHHHHHCCCEEEecC---CCcCHhHHHHHHHhCCCCEEEEECCCh
Confidence            5666665443   22 3577788899999999998875   234555566666554445666666543

In aaRSs, the anticodon binding domain is responsible for specificity in tRNA-binding, so that the activated amino acid is transferred to a ribose 3' OH group of the appropriate tRNA only. This domain is also found in the accessory subunit of mitochondrial polymerase gamma (Pol gamma b).

>PF03720 UDPG_MGDP_dh_C: UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain; InterPro: IPR014027 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]

Probab=86.99  E-value=1  Score=26.97  Aligned_cols=53  Identities=21%  Similarity=0.323  Sum_probs=34.0

Q ss_pred             CcCChhHHHHHHHHHhcCCceEEeec-cCCCC----------cchHHHHHHHHHhCCEEEEEEc
Q 037311           20 EDIRDNFTSHLYSALARQNIQTFIDD-QLNRG----------DEISESLVKAIKASAISVIIFS   72 (93)
Q Consensus        20 ~D~~~~~~~~L~~~L~~~gi~v~~d~-~~~~G----------~~~~~~i~~~i~~s~~~i~v~S   72 (93)
                      .|.|++-+..|.+.|.++|+.|...+ -+...          -.+.+++.++++.++++|+...
T Consensus        12 ~D~R~Sp~~~l~~~L~~~g~~V~~~DP~v~~~~~~~~~~~~~~~~~~~~~~~~~~~D~vvl~t~   75 (106)
T PF03720_consen   12 DDIRESPALELIEELKERGAEVSVYDPYVDEEEIKELGKLEGVEVCDDLEEALKGADAVVLATD   75 (106)
T ss_dssp             S--TT-HHHHHHHHHHHTT-EEEEE-TTSHHHHHHHHCHHHCEEEESSHHHHHTTESEEEESS-
T ss_pred             cccccCHHHHHHHHHHHCCCEEEEECCccChHHHHhhCCccceEEecCHHHHhcCCCEEEEEec
Confidence            57788888999999999999998876 33221          2223356788888888776655

The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the C-terminal substrate-binding domain of these enzymes. Structural studies indicate that this domain forms an incomplete dinucleotide binding fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3GG2_D 1DLI_A 1DLJ_A 2Y0E_D 2Y0D_B 2Y0C_D 1MV8_B 1MUU_A 1MFZ_C 3TDK_B ....

>PF14359 DUF4406: Domain of unknown function (DUF4406)

Probab=86.66  E-value=4.8  Score=23.80  Aligned_cols=65  Identities=11%  Similarity=0.064  Sum_probs=45.2

Q ss_pred             hhHHHHHHHHHhcCCceEEeecc--CCCCcchHHHHHH---HHHhCCEEEEEEcCCCCCcHHHHHHHHHHHhh
Q 037311           24 DNFTSHLYSALARQNIQTFIDDQ--LNRGDEISESLVK---AIKASAISVIIFSEDYASSRWCLDEFAEILEC   91 (93)
Q Consensus        24 ~~~~~~L~~~L~~~gi~v~~d~~--~~~G~~~~~~i~~---~i~~s~~~i~v~S~~y~~S~wc~~El~~~~~~   91 (93)
                      ..|. .....|++.|+.|.--..  ...|..+.+-+..   .+.+|+.++++  |++-.|.=|.-|...|...
T Consensus        16 ~~f~-~~a~~L~~~G~~vvnPa~~~~~~~~~~~~ym~~~l~~L~~cD~i~~l--~gWe~S~GA~~E~~~A~~l   85 (92)
T PF14359_consen   16 PAFN-AAAKRLRAKGYEVVNPAELGIPEGLSWEEYMRICLAMLSDCDAIYML--PGWENSRGARLEHELAKKL   85 (92)
T ss_pred             HHHH-HHHHHHHHCCCEEeCchhhCCCCCCCHHHHHHHHHHHHHhCCEEEEc--CCcccCcchHHHHHHHHHC
Confidence            3443 466788899977664333  4677766654444   45577766554  9999999999999988754

>PF03129 HGTP_anticodon: Anticodon binding domain; InterPro: IPR004154 tRNA synthetases, or tRNA ligases are involved in protein synthesis

Probab=85.99  E-value=3.4  Score=23.65  Aligned_cols=46  Identities=20%  Similarity=0.272  Sum_probs=30.9

Q ss_pred             hhHHHHHHHHHhcCCceEEeeccCCCCcchHHHHHHHHHhCCEEEEEEc
Q 037311           24 DNFTSHLYSALARQNIQTFIDDQLNRGDEISESLVKAIKASAISVIIFS   72 (93)
Q Consensus        24 ~~~~~~L~~~L~~~gi~v~~d~~~~~G~~~~~~i~~~i~~s~~~i~v~S   72 (93)
                      ..++.+|...|++.||++.+|.   .+..+...+.++-..---+++++.
T Consensus        15 ~~~a~~l~~~L~~~gi~v~~d~---~~~~~~k~~~~a~~~g~p~~iiiG   60 (94)
T PF03129_consen   15 IEYAQELANKLRKAGIRVELDD---SDKSLGKQIKYADKLGIPFIIIIG   60 (94)
T ss_dssp             HHHHHHHHHHHHHTTSEEEEES---SSSTHHHHHHHHHHTTESEEEEEE
T ss_pred             HHHHHHHHHHHHHCCCEEEEEC---CCCchhHHHHHHhhcCCeEEEEEC
Confidence            3678999999999999999986   334444566666544333444443

This domain is found in histidyl, glycyl, threonyl and prolyl tRNA synthetases [] it is probably the anticodon binding domain [].; GO: 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding; PDB: 1KOG_B 1EVL_D 1EVK_B 1QF6_A 1FYF_B 2I4O_A 2I4M_A 2I4N_A 2I4L_A 1HC7_D ....

>cd00858 GlyRS_anticodon GlyRS Glycyl-anticodon binding domain

Probab=85.94  E-value=4.7  Score=24.53  Aligned_cols=62  Identities=13%  Similarity=0.044  Sum_probs=41.6

Q ss_pred             CcccEEEecccC-cCChhHHHHHHHHHhcCCceEEeeccCCCCcchHHHHHHHHHhCCEEEEEEcCC
Q 037311            9 KKYDVFVSFRGE-DIRDNFTSHLYSALARQNIQTFIDDQLNRGDEISESLVKAIKASAISVIIFSED   74 (93)
Q Consensus         9 ~~ydVFISy~~~-D~~~~~~~~L~~~L~~~gi~v~~d~~~~~G~~~~~~i~~~i~~s~~~i~v~S~~   74 (93)
                      ..+||+|-..++ +.....+..|...|++.|+++-+|.  .  ..+...+..+-+.--..++++.++
T Consensus        25 ap~~v~Ii~~~~~~~~~~~a~~la~~LR~~gi~v~~d~--~--~sl~kqlk~A~k~g~~~~iiiG~~   87 (121)
T cd00858          25 APIKVAVLPLVKRDELVEIAKEISEELRELGFSVKYDD--S--GSIGRRYARQDEIGTPFCVTVDFD   87 (121)
T ss_pred             CCcEEEEEecCCcHHHHHHHHHHHHHHHHCCCEEEEeC--C--CCHHHHHHHhHhcCCCEEEEECcC
Confidence            457888877652 1123566788999999999999874  2  466666766655555566666655

GlyRS belongs to class II aminoacyl-tRNA synthetases (aaRS). This alignment contains the anticodon binding domain, which is responsible for specificity in tRNA-binding, so that the activated amino acid is transferred to a ribose 3' OH group of the appropriate tRNA only.

>cd02042 ParA ParA and ParB of Caulobacter crescentus belong to a conserved family of bacterial proteins implicated in chromosome segregation

Probab=83.08  E-value=6.9  Score=22.63  Aligned_cols=61  Identities=16%  Similarity=0.124  Sum_probs=41.9

Q ss_pred             EEEecccCcCChhHHHHHHHHHhcCCceEEeec-c---------CCCCcchHHHHHHHHHhCCEEEEEEcCCC
Q 037311           13 VFVSFRGEDIRDNFTSHLYSALARQNIQTFIDD-Q---------LNRGDEISESLVKAIKASAISVIIFSEDY   75 (93)
Q Consensus        13 VFISy~~~D~~~~~~~~L~~~L~~~gi~v~~d~-~---------~~~G~~~~~~i~~~i~~s~~~i~v~S~~y   75 (93)
                      +|.|..+--.+-.++.+|...|.++|.++.+-+ |         ..|+.  .......+..|+.+|+++.+..
T Consensus         3 ~~~~~kgG~Gkst~~~~la~~~~~~~~~vl~~d~d~~~d~viiD~p~~~--~~~~~~~l~~ad~viv~~~~~~   73 (104)
T cd02042           3 AVANQKGGVGKTTTAVNLAAALARRGKRVLLIDLDPQYDYIIIDTPPSL--GLLTRNALAAADLVLIPVQPSP   73 (104)
T ss_pred             EEEeCCCCcCHHHHHHHHHHHHHhCCCcEEEEeCCCCCCEEEEeCcCCC--CHHHHHHHHHCCEEEEeccCCH
Confidence            355655543334567888888988898877754 3         33432  3445588999999999998874

ParB binds to DNA sequences adjacent to the origin of replication and localizes to opposite cell poles shortly following the initiation of DNA replication. ParB regulates the ParA ATPase activity by promoting nucleotide exchange in a fashion reminiscent of the exchange factors of eukaryotic G proteins. ADP-bound ParA binds single-stranded DNA, whereas the ATP-bound form dissociates ParB from its DNA binding sites. Increasing the fraction of ParA-ADP in the cell inhibits cell division, suggesting that this simple nucleotide switch may regulate cytokinesis. ParA shares sequence similarity to a conserved and widespread family of ATPases which includes the repA protein of the repABC operon in R. etli Sym plasmid. This operon is involved in the plasmid replication and partition.

>cd02426 Pol_gamma_b_Cterm C-terminal domain of mitochondrial DNA polymerase gamma B subunit, which is required for processivity

Probab=83.03  E-value=2  Score=26.84  Aligned_cols=31  Identities=6%  Similarity=0.110  Sum_probs=24.5

Q ss_pred             hhHHHHHHHHHhcCCceEEeec-cC---CCCcchH
Q 037311           24 DNFTSHLYSALARQNIQTFIDD-QL---NRGDEIS   54 (93)
Q Consensus        24 ~~~~~~L~~~L~~~gi~v~~d~-~~---~~G~~~~   54 (93)
                      ...+..|++.|++.|+++..|+ +-   .+|..+.
T Consensus        43 ~~~a~~l~~~L~~~gi~v~~D~r~~~~~~~G~k~~   77 (128)
T cd02426          43 RDLCQGLKNELREAGLSVWPGYLETQHSSLEQLLD   77 (128)
T ss_pred             HHHHHHHHHHHHHcCCEEEeccCcccccCHHHHHH
Confidence            4678899999999999999988 43   5665554

Polymerase gamma replicates and repairs mitochondrial DNA. The c-terminal domain of its B subunit is strikingly similar to the anticodon-binding domain of glycyl tRNA synthetase.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	93
3jrn_A	176	Crystal Structure Of Tir Domain From Arabidopsis Th		7e-15
3ozi_A	204	Crystal Structure Of The Tir Domain From The Flax D		2e-12

>pdb|3JRN|A Chain A, Crystal Structure Of Tir Domain From Arabidopsis Thaliana Length = 176

Iteration: 1
 Score = 75.5 bits (184), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 40/90 (44%), Positives = 50/90 (55%), Gaps = 1/90 (1%)
Query: 5  SRNNKKYDVFVSFRGEDIRDNFTSHLYSALARQNIQTFIDD-QLNRGDEISESLXXXXXX 63
          S    KYDVF+SFRG D R NF S LY  L R++I+TF DD +L  G   S  L      
Sbjct: 3  SHTATKYDVFLSFRGHDTRHNFISFLYKELVRRSIRTFKDDKELENGQRFSPELKSPIEV 62
Query: 64 XXXXXXXFSEDYASSRWCLDEFAEILECKK 93
                  SE+YA+S WCLDE   I++ +K
Sbjct: 63 SRFAVVVVSENYAASSWCLDELVTIMDFEK 92

>pdb|3OZI|A Chain A, Crystal Structure Of The Tir Domain From The Flax Disease Resistance Protein L6 Length = 204

Iteration: 1
 Score = 67.4 bits (163), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 36/81 (44%), Positives = 46/81 (56%), Gaps = 1/81 (1%)
Query: 10  KYDVFVSFRGEDIRDNFTSHLYSALARQNIQTFI-DDQLNRGDEISESLXXXXXXXXXXX 68
           +Y+VF+SFRG D R+ FT  LY +L R  I TF  DD+L +G EI  +L           
Sbjct: 35  EYEVFLSFRGPDTREQFTDFLYQSLRRYKIHTFRDDDELLKGKEIGPNLLRAIDQSKIYV 94
Query: 69  XXFSEDYASSRWCLDEFAEIL 89
              S  YA S+WCL E AEI+
Sbjct: 95  PIISSGYADSKWCLMELAEIV 115

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	93
3jrn_A	176	AT1G72930 protein; TIR domain arabidopsis thaliana	1e-49
3ozi_A	204	L6TR; plant TIR domain, plant protein; 2.30A {Linu	1e-48
3h16_A	154	TIR protein; bacteria TIR domain, signaling protei	6e-45
3ub2_A	146	TOLL/interleukin-1 receptor domain-containing ADA	1e-14
2j67_A	178	TOLL like receptor 10; TIR, IL-1, TLR10, membrane,	2e-09
1t3g_A	159	X-linked interleukin-1 receptor accessory protein-	1e-07
1fyx_A	149	TOLL-like receptor 2; beta-alpha-beta fold, signal	3e-06
2js7_A	160	Myeloid differentiation primary response protein M	1e-05

>3jrn_A AT1G72930 protein; TIR domain arabidopsis thaliana, plant protein; 2.00A {Arabidopsis thaliana} Length = 176

 Score =  153 bits (389), Expect = 1e-49
 Identities = 44/94 (46%), Positives = 60/94 (63%), Gaps = 3/94 (3%)

Query: 1  MASFSRNNKKYDVFVSFRGEDIRDNFTSHLYSALARQNIQTFIDDQ-LNRGDEISESLVK 59
          M+S +    KYDVF+SFRG D R NF S LY  L R++I+TF DD+ L  G   S  L  
Sbjct: 1  MSSHT--ATKYDVFLSFRGHDTRHNFISFLYKELVRRSIRTFKDDKELENGQRFSPELKS 58

Query: 60 AIKASAISVIIFSEDYASSRWCLDEFAEILECKK 93
           I+ S  +V++ SE+YA+S WCLDE   I++ +K
Sbjct: 59 PIEVSRFAVVVVSENYAASSWCLDELVTIMDFEK 92

>3ozi_A L6TR; plant TIR domain, plant protein; 2.30A {Linum usitatissimum} Length = 204

 Score =  152 bits (385), Expect = 1e-48
 Identities = 44/92 (47%), Positives = 58/92 (63%), Gaps = 1/92 (1%)

Query: 3   SFSRNNKKYDVFVSFRGEDIRDNFTSHLYSALARQNIQTFIDDQ-LNRGDEISESLVKAI 61
           S S  + +Y+VF+SFRG D R+ FT  LY +L R  I TF DD  L +G EI  +L++AI
Sbjct: 28  SGSFPSVEYEVFLSFRGPDTREQFTDFLYQSLRRYKIHTFRDDDELLKGKEIGPNLLRAI 87

Query: 62  KASAISVIIFSEDYASSRWCLDEFAEILECKK 93
             S I V I S  YA S+WCL E AEI+  ++
Sbjct: 88  DQSKIYVPIISSGYADSKWCLMELAEIVRRQE 119

>3h16_A TIR protein; bacteria TIR domain, signaling protein; 2.50A {Paracoccus denitrificans PD1222} Length = 154

 Score =  140 bits (356), Expect = 6e-45
 Identities = 19/94 (20%), Positives = 39/94 (41%), Gaps = 2/94 (2%)

Query: 1   MASFSRNNKKYDVFVSFRGEDIRDNFTSHLYSALARQNIQTFIDDQ-LNRGDEISESLVK 59
             +   +   +D+F+S   ED + +F   L   L     + + DD  L  GD +  S+ K
Sbjct: 11  TNADLTSAPPHDIFISHAWED-KADFVEALAHTLRAAGAEVWYDDFSLRPGDSLRRSIDK 69

Query: 60  AIKASAISVIIFSEDYASSRWCLDEFAEILECKK 93
            + +S   +++ S  +    W   E   + + + 
Sbjct: 70  GLGSSRFGIVVLSTHFFKKEWPQKELDGLFQLES 103

>3ub2_A TOLL/interleukin-1 receptor domain-containing ADA protein; TIR domain, TLRS adaptor, immune system; 2.40A {Homo sapiens} PDB: 3ub3_A 3ub4_A 2y92_A Length = 146

 Score = 63.6 bits (155), Expect = 1e-14
 Identities = 22/92 (23%), Positives = 39/92 (42%), Gaps = 5/92 (5%)

Query: 3  SFSRNNKKYDVFVSFRGEDIRDNFTSHLYSAL--ARQNIQTFIDDQ-LNRGDEISESLVK 59
            SR +K YDV V    ED+       L S L  +  +++ F+  +    G  I   L +
Sbjct: 3  GSSRWSKDYDVCVCHSEEDLV--AAQDLVSYLEGSTASLRCFLQLRDATPGGAIVSELCQ 60

Query: 60 AIKASAISVIIFSEDYASSRWCLDEFAEILEC 91
          A+ +S   V++ +  +    WC  +  + L  
Sbjct: 61 ALSSSHCRVLLITPGFLQDPWCKYQMLQALTE 92

>2j67_A TOLL like receptor 10; TIR, IL-1, TLR10, membrane, innate immunity, immune response, leucine-rich repeat, glycoprotein, transmembrane; 2.20A {Homo sapiens} PDB: 1fyv_A Length = 178

 Score = 50.7 bits (121), Expect = 2e-09
 Identities = 20/82 (24%), Positives = 37/82 (45%), Gaps = 4/82 (4%)

Query: 7   NNKKYDVFVSFRGEDIRDNFTSHLYSAL--ARQNIQTFIDDQ-LNRGDEISESLVKAIKA 63
            N ++  F+S+   D      + L   L     +I   + +   + G  ISE++V  I+ 
Sbjct: 32  RNVRFHAFISYSEHD-SLWVKNELIPNLEKEDGSILICLYESYFDPGKSISENIVSFIEK 90

Query: 64  SAISVIIFSEDYASSRWCLDEF 85
           S  S+ + S ++  + WC  EF
Sbjct: 91  SYKSIFVLSPNFVQNEWCHYEF 112

>1t3g_A X-linked interleukin-1 receptor accessory protein-like 1; TIR, IL-1RAPL, IL-1R, TLR, membrane protein; 2.30A {Homo sapiens} Length = 159

 Score = 45.9 bits (108), Expect = 1e-07
 Identities = 16/90 (17%), Positives = 31/90 (34%), Gaps = 13/90 (14%)

Query: 9  KKYDVFVSFRGEDIR---------DNFTSHLYSAL--ARQNIQTFIDD-QLNRGDEISES 56
          K YD ++S+   D           + F   +   +       + FI D  L       E 
Sbjct: 1  KDYDAYLSYTKVDPDQWNQETGEEERFALEILPDMLEKHYGYKLFIPDRDLIPTGTYIED 60

Query: 57 LVKAIKASAISVIIFSEDYA-SSRWCLDEF 85
          + + +  S   +I+ + +Y     W + E 
Sbjct: 61 VARCVDQSKRLIIVMTPNYVVRRGWSIFEL 90

>1fyx_A TOLL-like receptor 2; beta-alpha-beta fold, signaling protein; 2.80A {Homo sapiens} SCOP: c.23.2.1 PDB: 1fyw_A 1o77_A Length = 149

 Score = 41.8 bits (98), Expect = 3e-06
 Identities = 19/82 (23%), Positives = 32/82 (39%), Gaps = 4/82 (4%)

Query: 7  NNKKYDVFVSFRGEDIRDNFTSHLYSALARQNIQ---TFIDDQLNRGDEISESLVKAIKA 63
           N  YD FVS+   D      + +   L   N              G  I ++++ +I+ 
Sbjct: 2  RNIXYDAFVSYSERD-AYWVENLMVQELENFNPPFKLXLHKRDFIHGKWIIDNIIDSIEK 60

Query: 64 SAISVIIFSEDYASSRWCLDEF 85
          S  +V + SE++  S W   E 
Sbjct: 61 SHKTVFVLSENFVKSEWXKYEL 82

>2js7_A Myeloid differentiation primary response protein MYD88; MYD88_human, TIR domain, TOLL like receptor adaptor domain, innate immune signaling; NMR {Homo sapiens} PDB: 2z5v_A Length = 160

 Score = 40.1 bits (94), Expect = 1e-05
 Identities = 16/84 (19%), Positives = 35/84 (41%), Gaps = 6/84 (7%)

Query: 6  RNNKKYDVFVSFRGEDIRDNFTSHLYSAL--ARQNIQTFIDDQ-LNRGDEISESLVKAI- 61
             +++D F+ +   DI+  F   +   L      ++  + D+ +  G  +     + I 
Sbjct: 12 HMPERFDAFICYCPSDIQ--FVQEMIRQLEQTNYRLKLCVSDRDVLPGTCVWSIASELIE 69

Query: 62 KASAISVIIFSEDYASSRWCLDEF 85
          K     V++ S+DY  S+ C  + 
Sbjct: 70 KRCRRMVVVVSDDYLQSKECDFQT 93

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	93
3jrn_A	176	AT1G72930 protein; TIR domain arabidopsis thaliana	100.0
3ozi_A	204	L6TR; plant TIR domain, plant protein; 2.30A {Linu	99.98
3h16_A	154	TIR protein; bacteria TIR domain, signaling protei	99.95
3ub2_A	146	TOLL/interleukin-1 receptor domain-containing ADA	99.94
1t3g_A	159	X-linked interleukin-1 receptor accessory protein-	99.93
2js7_A	160	Myeloid differentiation primary response protein M	99.93
1fyx_A	149	TOLL-like receptor 2; beta-alpha-beta fold, signal	99.93
2j67_A	178	TOLL like receptor 10; TIR, IL-1, TLR10, membrane,	99.93
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	99.83
1eiw_A	111	Hypothetical protein MTH538; CHEY-like fold, flavo	98.72
3hyn_A	189	Putative signal transduction protein; DUF1863 fami	97.71
2f62_A	161	Nucleoside 2-deoxyribosyltransferase; SGPP, struct	96.16
2khz_A	165	C-MYC-responsive protein RCL; flexible loop, nucle	93.71
4fyk_A	152	Deoxyribonucleoside 5'-monophosphate N-glycosidas;	92.75
3ehd_A	162	Uncharacterized conserved protein; PSI,MCSG,PF0501	92.08
1s2d_A	167	Purine trans deoxyribosylase; ribosylate intermedi	87.42
2yvq_A	143	Carbamoyl-phosphate synthase; conserved hypothetic	83.56

>3jrn_A AT1G72930 protein; TIR domain arabidopsis thaliana, plant protein; 2.00A {Arabidopsis thaliana}

Probab=100.00  E-value=3.9e-34  Score=187.73  Aligned_cols=88  Identities=48%  Similarity=0.867  Sum_probs=68.5

Q ss_pred             CCCCCcccEEEecccCcCChhHHHHHHHHHhcCCceEEeec-cCCCCcchHHHHHHHHHhCCEEEEEEcCCCCCcHHHHH
Q 037311            5 SRNNKKYDVFVSFRGEDIRDNFTSHLYSALARQNIQTFIDD-QLNRGDEISESLVKAIKASAISVIIFSEDYASSRWCLD   83 (93)
Q Consensus         5 ~~~~~~ydVFISy~~~D~~~~~~~~L~~~L~~~gi~v~~d~-~~~~G~~~~~~i~~~i~~s~~~i~v~S~~y~~S~wc~~   83 (93)
                      |+.+++|||||||+++|+|+.|+.+|+.+|+++||++|+|+ ++++|+.|.++|.++|++|+++|+|+||+|++|+||++
T Consensus         3 ss~~~~yDVFiSfrg~D~r~~Fv~~L~~~L~~~gi~~f~D~~~l~~G~~i~~~l~~aIe~Sri~IvV~S~ny~~S~WCl~   82 (176)
T 3jrn_A            3 SHTATKYDVFLSFRGHDTRHNFISFLYKELVRRSIRTFKDDKELENGQRFSPELKSPIEVSRFAVVVVSENYAASSWCLD   82 (176)
T ss_dssp             ----CCEEEEEEECHHHHTTTHHHHHHHHHHHTTCCEECCCC--------------CCTTEEEEEEEECTTTTTCHHHHH
T ss_pred             CCCCCCCeEEEECcCcccChHHHHHHHHHHHHCCCEEEEEcccccCCCchHHHHHHHHHhCCEEEEEecCCcCCChhHHH
Confidence            44688999999999999988999999999999999999998 99999999999999999999999999999999999999


Q ss_pred             HHHHHHhhc
Q 037311           84 EFAEILECK   92 (93)
Q Consensus        84 El~~~~~~~   92 (93)
                      ||.++++|+
T Consensus        83 EL~~i~~~~   91 (176)
T 3jrn_A           83 ELVTIMDFE   91 (176)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHhhh
Confidence            999999985

>3ozi_A L6TR; plant TIR domain, plant protein; 2.30A {Linum usitatissimum}

Probab=99.98  E-value=2e-33  Score=187.66  Aligned_cols=89  Identities=48%  Similarity=0.778  Sum_probs=82.4

Q ss_pred             CCCCCCcccEEEecccCcCChhHHHHHHHHHhcCCceEEeec-cCCCCcchHHHHHHHHHhCCEEEEEEcCCCCCcHHHH
Q 037311            4 FSRNNKKYDVFVSFRGEDIRDNFTSHLYSALARQNIQTFIDD-QLNRGDEISESLVKAIKASAISVIIFSEDYASSRWCL   82 (93)
Q Consensus         4 s~~~~~~ydVFISy~~~D~~~~~~~~L~~~L~~~gi~v~~d~-~~~~G~~~~~~i~~~i~~s~~~i~v~S~~y~~S~wc~   82 (93)
                      ++++.++|||||||+++|+|+.|+.+|+.+|+++||++|+|+ ++++|+.|.++|.++|++|+++|+|+||+|+.|+||+
T Consensus        29 ~~~~~~~yDVFISfrg~D~r~~Fv~~L~~aL~~~GI~~f~D~~el~~G~~I~~~l~~aIe~Sri~IvV~S~nYa~S~WCl  108 (204)
T 3ozi_A           29 GSFPSVEYEVFLSFRGPDTREQFTDFLYQSLRRYKIHTFRDDDELLKGKEIGPNLLRAIDQSKIYVPIISSGYADSKWCL  108 (204)
T ss_dssp             -----CCCCEEEEECHHHHTTTHHHHHHHHHHHTTCCEEEEETTTCCGGGTTTTHHHHHHHCSEEEEEECTTGGGCHHHH
T ss_pred             CCCCCcCCeEEEeccccCCCHHHHHHHHHHHHHCCCcEEEeCCccCCCCchHHHHHHHHHhCcEeeEEEEcccccCcHHH
Confidence            357789999999999999988999999999999999999999 9999999999999999999999999999999999999


Q ss_pred             HHHHHHHhhc
Q 037311           83 DEFAEILECK   92 (93)
Q Consensus        83 ~El~~~~~~~   92 (93)
                      +||.++++|+
T Consensus       109 ~EL~~I~e~~  118 (204)
T 3ozi_A          109 MELAEIVRRQ  118 (204)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHH
Confidence            9999999985

>3h16_A TIR protein; bacteria TIR domain, signaling protein; 2.50A {Paracoccus denitrificans PD1222}

Probab=99.95  E-value=4.6e-30  Score=164.78  Aligned_cols=86  Identities=22%  Similarity=0.457  Sum_probs=80.7

Q ss_pred             CCCCcccEEEecccCcCChhHHHHHHHHHhcCCceEEeec-cCCCCcchHHHHHHHHHhCCEEEEEEcCCCCCcHHHHHH
Q 037311            6 RNNKKYDVFVSFRGEDIRDNFTSHLYSALARQNIQTFIDD-QLNRGDEISESLVKAIKASAISVIIFSEDYASSRWCLDE   84 (93)
Q Consensus         6 ~~~~~ydVFISy~~~D~~~~~~~~L~~~L~~~gi~v~~d~-~~~~G~~~~~~i~~~i~~s~~~i~v~S~~y~~S~wc~~E   84 (93)
                      .+.++|||||||+++| ++.|+.+|+.+|+++|+++|+|+ ++.+|+.|.+.|.++|++|+++|+|+||+|+.|+||+.|
T Consensus        16 ~~~~~~dvFISy~~~D-~~~~~~~L~~~L~~~gi~v~~D~~~l~~G~~~~~~i~~ai~~s~~~i~v~S~~y~~S~wc~~E   94 (154)
T 3h16_A           16 TSAPPHDIFISHAWED-KADFVEALAHTLRAAGAEVWYDDFSLRPGDSLRRSIDKGLGSSRFGIVVLSTHFFKKEWPQKE   94 (154)
T ss_dssp             --CCSEEEEEEEEGGG-TTTTHHHHHHHHHHHTCCEECGGGEECTTCCHHHHHHHHHTSEEEEEEEEEHHHHTTCCCHHH
T ss_pred             CCCCCceEEEECcccC-hHHHHHHHHHHHHHCCCcEEEcHHhCCCccHHHHHHHHHHHhCcEEEEEeCcchhcChHHHHH
Confidence            4568999999999999 45899999999999999999999 999999999999999999999999999999999999999


Q ss_pred             HHHHHhhc
Q 037311           85 FAEILECK   92 (93)
Q Consensus        85 l~~~~~~~   92 (93)
                      +..+++|.
T Consensus        95 l~~~~~~~  102 (154)
T 3h16_A           95 LDGLFQLE  102 (154)
T ss_dssp             HHHHTCCC
T ss_pred             HHHHHHHH
Confidence            99999874

>3ub2_A TOLL/interleukin-1 receptor domain-containing ADA protein; TIR domain, TLRS adaptor, immune system; 2.40A {Homo sapiens} PDB: 3ub3_A 3ub4_A 2y92_A

Probab=99.94  E-value=1.4e-28  Score=157.20  Aligned_cols=87  Identities=25%  Similarity=0.415  Sum_probs=67.8

Q ss_pred             CCCCCCcccEEEecccCcCChhHHHHHHHHHhc--CCceEEeec-cCCCCcchHHHHHHHHHhCCEEEEEEcCCCCCcHH
Q 037311            4 FSRNNKKYDVFVSFRGEDIRDNFTSHLYSALAR--QNIQTFIDD-QLNRGDEISESLVKAIKASAISVIIFSEDYASSRW   80 (93)
Q Consensus         4 s~~~~~~ydVFISy~~~D~~~~~~~~L~~~L~~--~gi~v~~d~-~~~~G~~~~~~i~~~i~~s~~~i~v~S~~y~~S~w   80 (93)
                      |+..++.|||||||+++|+  .||.+|..+|++  .|+++|+++ |+.||+.+.++|.++|++|+++|+|+||+|++|+|
T Consensus         4 ~~r~~k~YDvFISy~~~D~--~~v~~L~~~Le~~~~g~~~~l~~rD~~~G~~i~~~i~~aI~~Sr~~I~VlS~~y~~S~w   81 (146)
T 3ub2_A            4 SSRWSKDYDVCVCHSEEDL--VAAQDLVSYLEGSTASLRCFLQLRDATPGGAIVSELCQALSSSHCRVLLITPGFLQDPW   81 (146)
T ss_dssp             CCTTSSSEEEEEECCGGGH--HHHHHHHHHHHC------------------CCCEEECCTTCCEEEEEEEECHHHHHCHH
T ss_pred             CCCCCCcceEEEeCChhhH--HHHHHHHHHHhCcCCCeEEEEECccccccccHHHHHHHHHHhCCEEEEEECcccccCHH
Confidence            6678899999999999995  589999999998  599999999 99999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhhc
Q 037311           81 CLDEFAEILECK   92 (93)
Q Consensus        81 c~~El~~~~~~~   92 (93)
                      |+.|+..|+++.
T Consensus        82 c~~El~~al~~~   93 (146)
T 3ub2_A           82 CKYQMLQALTEA   93 (146)
T ss_dssp             HHHHHHHHHHTS
T ss_pred             HHHHHHHHHHHH
Confidence            999999999874

>1t3g_A X-linked interleukin-1 receptor accessory protein-like 1; TIR, IL-1RAPL, IL-1R, TLR, membrane protein; 2.30A {Homo sapiens}

Probab=99.93  E-value=1e-26  Score=150.29  Aligned_cols=83  Identities=22%  Similarity=0.428  Sum_probs=75.9

Q ss_pred             CcccEEEecccCcC---------ChhHHHHHHH-HHh-cCCceEEeec-cCCCCcchHHHHHHHHHhCCEEEEEEcCCCC
Q 037311            9 KKYDVFVSFRGEDI---------RDNFTSHLYS-ALA-RQNIQTFIDD-QLNRGDEISESLVKAIKASAISVIIFSEDYA   76 (93)
Q Consensus         9 ~~ydVFISy~~~D~---------~~~~~~~L~~-~L~-~~gi~v~~d~-~~~~G~~~~~~i~~~i~~s~~~i~v~S~~y~   76 (93)
                      +.|||||||+++|.         ++.||.+|.. .|+ +.|+++|+++ |+.||+.+.++|.++|++|+++|+|+||+|+
T Consensus         1 k~yDaFISy~~~D~~wv~~~~~~~~~fv~~ll~~~LE~~~g~~l~~~~rD~~~G~~i~~~i~~~I~~Sr~~IvVlS~~y~   80 (159)
T 1t3g_A            1 KDYDAYLSYTKVDPDQWNQETGEEERFALEILPDMLEKHYGYKLFIPDRDLIPTGTYIEDVARCVDQSKRLIIVMTPNYV   80 (159)
T ss_dssp             CCBSEEEECCCCC-------CCSHHHHHHTHHHHHHHHTSCCCEECHHHHCCCCTTHHHHHHHHHHTBSEEEEEECHHHH
T ss_pred             CCceEEEeCccccchhhhccchhhHHHHHHHHHHHHcCCCCeEEEEEcccccCccchHHHHHHHHHHcCEEEEEEccchh
Confidence            57999999999996         3578888665 699 7999999999 9999999999999999999999999999997


Q ss_pred             -CcHHHHHHHHHHHhh
Q 037311           77 -SSRWCLDEFAEILEC   91 (93)
Q Consensus        77 -~S~wc~~El~~~~~~   91 (93)
                       .|+||..|+..|+++
T Consensus        81 ~~S~wc~~El~~a~~~   96 (159)
T 1t3g_A           81 VRRGWSIFELETRLRN   96 (159)
T ss_dssp             HTTTTHHHHHSHHHHH
T ss_pred             hcChHHHHHHHHHHHH
Confidence             999999999999876

>2js7_A Myeloid differentiation primary response protein MYD88; MYD88_human, TIR domain, TOLL like receptor adaptor domain, innate immune signaling; NMR {Homo sapiens} PDB: 2z5v_A

Probab=99.93  E-value=3e-27  Score=152.92  Aligned_cols=87  Identities=17%  Similarity=0.301  Sum_probs=80.4

Q ss_pred             CCCCCCcccEEEecccCcCChhHHHHHHHHHhcC--CceEEeec-cCCCCcchHHHHHHHHH-hCCEEEEEEcCCCCCcH
Q 037311            4 FSRNNKKYDVFVSFRGEDIRDNFTSHLYSALARQ--NIQTFIDD-QLNRGDEISESLVKAIK-ASAISVIIFSEDYASSR   79 (93)
Q Consensus         4 s~~~~~~ydVFISy~~~D~~~~~~~~L~~~L~~~--gi~v~~d~-~~~~G~~~~~~i~~~i~-~s~~~i~v~S~~y~~S~   79 (93)
                      .+..++.|||||||+++|  +.||.+|..+|++.  |+++|+++ |+.||+.+.++|.++|+ +|+++|+|+||+|++|.
T Consensus        10 ~~~~~~~yDvFISys~~D--~~fv~~L~~~Le~~~~g~~~~~~~rd~~~G~~i~~~i~~~I~~~Sr~~IvVlS~~y~~S~   87 (160)
T 2js7_A           10 LGHMPERFDAFICYCPSD--IQFVQEMIRQLEQTNYRLKLCVSDRDVLPGTCVWSIASELIEKRCRRMVVVVSDDYLQSK   87 (160)
T ss_dssp             TSCCTTCEEEEEECCGGG--HHHHHHHHHHHHTSSSCCCCEESCCSSSSSCSCCCCCGGGHHHHEEEEEEECCHHHHHSH
T ss_pred             CCCCCcceEEEEEccccc--HHHHHHHHHHHhcCCCceEEEEeCCCCCCCCcHHHHHHHHHHHhCCEEEEEECcchhcCH
Confidence            345688999999999999  57999999999984  79999999 99999999999999999 79999999999999999


Q ss_pred             HHHHHHHHHHhhc
Q 037311           80 WCLDEFAEILECK   92 (93)
Q Consensus        80 wc~~El~~~~~~~   92 (93)
                      ||+.|+..|+++.
T Consensus        88 wc~~El~~a~~~~  100 (160)
T 2js7_A           88 ECDFQTKFALSLS  100 (160)
T ss_dssp             HHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHH
Confidence            9999999999863

>1fyx_A TOLL-like receptor 2; beta-alpha-beta fold, signaling protein; 2.80A {Homo sapiens} SCOP: c.23.2.1 PDB: 1fyw_A 1o77_A

Probab=99.93  E-value=2e-27  Score=152.04  Aligned_cols=82  Identities=22%  Similarity=0.396  Sum_probs=77.1

Q ss_pred             CCCcccEEEecccCcCChhHHHH-HHHHHhcC--CceEEeec-cCCCCcchHHHHHHHHHhCCEEEEEEcCCCCCcHHHH
Q 037311            7 NNKKYDVFVSFRGEDIRDNFTSH-LYSALARQ--NIQTFIDD-QLNRGDEISESLVKAIKASAISVIIFSEDYASSRWCL   82 (93)
Q Consensus         7 ~~~~ydVFISy~~~D~~~~~~~~-L~~~L~~~--gi~v~~d~-~~~~G~~~~~~i~~~i~~s~~~i~v~S~~y~~S~wc~   82 (93)
                      .++.|||||||+++|.  .||.+ |...|++.  |+++|+|+ |+.||+.+.++|.++|++|+++|+|+||+|++|+||+
T Consensus         2 ~~~~yDvFiSy~~~D~--~~v~~~L~~~Le~~~~g~~~~~~~rd~~~G~~~~~~i~~~i~~Sr~~I~VlS~~y~~S~wc~   79 (149)
T 1fyx_A            2 RNIXYDAFVSYSERDA--YWVENLMVQELENFNPPFKLXLHKRDFIHGKWIIDNIIDSIEKSHKTVFVLSENFVKSEWXK   79 (149)
T ss_dssp             CSCCEEEEEECCGGGH--HHHHTHHHHHHTTSSSCCCEEEHHHHCCSSSCHHHHHHHHHHHEEEEEEEECHHHHHHHTHH
T ss_pred             CCccceEEEECCcccH--HHHHHHHHHHHhcCCCCeEEeeccccCCCchhHHHHHHHHHHHcCEEEEEeCcchhccchHH
Confidence            4689999999999995  79986 99999986  99999999 9999999999999999999999999999999999999


Q ss_pred             HHHHHHHh
Q 037311           83 DEFAEILE   90 (93)
Q Consensus        83 ~El~~~~~   90 (93)
                      .|+..|++
T Consensus        80 ~El~~a~~   87 (149)
T 1fyx_A           80 YELDFSHF   87 (149)
T ss_dssp             HHSCCSCC
T ss_pred             HHHHHHHH
Confidence            99988774

>2j67_A TOLL like receptor 10; TIR, IL-1, TLR10, membrane, innate immunity, immune response, leucine-rich repeat, glycoprotein, transmembrane; 2.20A {Homo sapiens} PDB: 1fyv_A

Probab=99.93  E-value=6.5e-27  Score=153.64  Aligned_cols=85  Identities=24%  Similarity=0.457  Sum_probs=78.7

Q ss_pred             CCCCCcccEEEecccCcCChhHHHH-HHHHHhc--CCceEEeec-cCCCCcchHHHHHHHHHhCCEEEEEEcCCCCCcHH
Q 037311            5 SRNNKKYDVFVSFRGEDIRDNFTSH-LYSALAR--QNIQTFIDD-QLNRGDEISESLVKAIKASAISVIIFSEDYASSRW   80 (93)
Q Consensus         5 ~~~~~~ydVFISy~~~D~~~~~~~~-L~~~L~~--~gi~v~~d~-~~~~G~~~~~~i~~~i~~s~~~i~v~S~~y~~S~w   80 (93)
                      ...++.|||||||+++|.  .||.. |...|++  .|+++|+++ |+.||+.+.++|.++|++|+++|+|+||+|+.|+|
T Consensus        30 ~~~~~~yDvFISys~~D~--~fv~~~L~~~LE~~~~g~~~~l~~rD~~~G~~i~~~i~~aI~~Sr~~IvVlS~~yl~S~w  107 (178)
T 2j67_A           30 LKRNVRFHAFISYSEHDS--LWVKNELIPNLEKEDGSILICLYESYFDPGKSISENIVSFIEKSYKSIFVLSPNFVQNEW  107 (178)
T ss_dssp             CCCSCCEEEEEECCGGGH--HHHHHTHHHHHTTCC-CCCEEEHHHHCCTTSCHHHHHHHHHHTEEEEEEEECHHHHHHTG
T ss_pred             cCCCccceEEEECCCCCH--HHHHHHHHHHHhcccCCeEEEEecccCCCCccHHHHHHHHHHhCCEEEEEecccccccch
Confidence            467789999999999994  79974 9999998  899999999 99999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhh
Q 037311           81 CLDEFAEILEC   91 (93)
Q Consensus        81 c~~El~~~~~~   91 (93)
                      |+.|+..|+++
T Consensus       108 c~~El~~a~~~  118 (178)
T 2j67_A          108 CHYEFYFAHHN  118 (178)
T ss_dssp             GGTHHHHTTCC
T ss_pred             HHHHHHHHHHH
Confidence            99999999864

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=99.83  E-value=6.2e-21  Score=146.44  Aligned_cols=84  Identities=20%  Similarity=0.416  Sum_probs=77.6

Q ss_pred             CCCCcccEEEecccCcCChhHH-HHHHHHHhc-----CCceEEeec-cCCCCcchHHHHHHHHHhCCEEEEEEcCCCCCc
Q 037311            6 RNNKKYDVFVSFRGEDIRDNFT-SHLYSALAR-----QNIQTFIDD-QLNRGDEISESLVKAIKASAISVIIFSEDYASS   78 (93)
Q Consensus         6 ~~~~~ydVFISy~~~D~~~~~~-~~L~~~L~~-----~gi~v~~d~-~~~~G~~~~~~i~~~i~~s~~~i~v~S~~y~~S   78 (93)
                      ..++.|||||||+++|.  .|| ..|...|+.     .|+++|+++ |+.||+.+.++|.++|++|+++|+|+|++|+.|
T Consensus       666 ~~~~~yd~fisy~~~d~--~~v~~~l~~~Le~~~~~~~~~~~~~~~rd~~~G~~~~~~i~~~i~~sr~~i~vls~~~~~s  743 (844)
T 3j0a_A          666 PDMYKYDAYLCFSSKDF--TWVQNALLKHLDTQYSDQNRFNLCFEERDFVPGENRIANIQDAIWNSRKIVCLVSRHFLRD  743 (844)
T ss_dssp             SSCCCCSEEEECCSTTH--HHHHHTHHHHHHSTTTTTTCSCEECSSSSCCSSSCHHHHHHHHHHHSSEEEEEECTTHHHH
T ss_pred             ccceeccEEEEeeCCcH--HHHHHHHHHHHhhccccCCceEEEEEccccCCCchHHHHHHHHHHHhCeEEEEeccccccC
Confidence            45789999999999995  687 779999985     589999999 999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHhh
Q 037311           79 RWCLDEFAEILEC   91 (93)
Q Consensus        79 ~wc~~El~~~~~~   91 (93)
                      +||..|+..|+.+
T Consensus       744 ~wc~~e~~~a~~~  756 (844)
T 3j0a_A          744 GWCLEAFSYAQGR  756 (844)
T ss_dssp             TSTTHHHHHHHSC
T ss_pred             hHHHHHHHHHHHH
Confidence            9999999998754

>1eiw_A Hypothetical protein MTH538; CHEY-like fold, flavodoxin-like fold, (A/B)5 doubly wound fold, parallel beta sheet; NMR {Methanothermobacterthermautotrophicus} SCOP: c.23.3.1

Probab=98.72  E-value=8.6e-09  Score=62.75  Aligned_cols=65  Identities=3%  Similarity=-0.053  Sum_probs=51.4

Q ss_pred             CcccEEEecccCcCChhHHHHHHHHHhcCCceEEeeccCCCCcchHHHHHHHHHhCCEEEEEEcCCCCCcHHHHHHHHHH
Q 037311            9 KKYDVFVSFRGEDIRDNFTSHLYSALARQNIQTFIDDQLNRGDEISESLVKAIKASAISVIIFSEDYASSRWCLDEFAEI   88 (93)
Q Consensus         9 ~~ydVFISy~~~D~~~~~~~~L~~~L~~~gi~v~~d~~~~~G~~~~~~i~~~i~~s~~~i~v~S~~y~~S~wc~~El~~~   88 (93)
                      .+|.+||||+.+|    -...|...|.+.|+... +              +.|+.|+++|+++++....|+||..|+..|
T Consensus         3 ~~~~lFISh~~~d----~~~~L~~~l~~~~f~~~-~--------------~~I~~~~~vIvL~G~~t~~s~wv~~EI~~A   63 (111)
T 1eiw_A            3 AEIRLYITEGEVE----DYRVFLERLEQSGLEWR-P--------------ATPEDADAVIVLAGLWGTRRDEILGAVDLA   63 (111)
T ss_dssp             CCEEEEECCCCSH----HHHHHHHHHHHHCSCEE-E--------------CCSSSCSEEEEEGGGTTTSHHHHHHHHHHH
T ss_pred             ceEEEEEecccHh----HHHHHHHHHhCCCCeee-c--------------CccccCCEEEEEeCCCcCCChHHHHHHHHH
Confidence            5799999999998    24456666654455332 1              568999999999999999999999999999


Q ss_pred             Hhhc
Q 037311           89 LECK   92 (93)
Q Consensus        89 ~~~~   92 (93)
                      .+..
T Consensus        64 ~~~g   67 (111)
T 1eiw_A           64 RKSS   67 (111)
T ss_dssp             TTTT
T ss_pred             HHcC
Confidence            8754

>3hyn_A Putative signal transduction protein; DUF1863 family protein, nucleotide-binding protein, structur genomics; HET: MSE; 1.20A {Eubacterium rectale atcc 33656}

Probab=97.71  E-value=0.00026  Score=46.37  Aligned_cols=72  Identities=17%  Similarity=0.103  Sum_probs=53.3

Q ss_pred             ccCcCChhHHHHHHHHHhcCCceEEeec-cCC-------C-CcchHHHHHHHHHhCCEEEEEEcCCCCCcHHHHHHHHHH
Q 037311           18 RGEDIRDNFTSHLYSALARQNIQTFIDD-QLN-------R-GDEISESLVKAIKASAISVIIFSEDYASSRWCLDEFAEI   88 (93)
Q Consensus        18 ~~~D~~~~~~~~L~~~L~~~gi~v~~d~-~~~-------~-G~~~~~~i~~~i~~s~~~i~v~S~~y~~S~wc~~El~~~   88 (93)
                      +.+|.  .....|..--....+--|.|- +..       . -..|.+.+.+.|+.|+.+|+++|++...+.|...|+..|
T Consensus        27 a~~Di--~yy~lL~aWk~n~n~F~F~D~Hd~~y~vrDsS~~e~tIKrrLReRI~~Sk~vIllIs~~T~~s~~v~wEIe~A  104 (189)
T 3hyn_A           27 STHDF--VYYNMLRMWKGEDNSFPFNDAHDKTYNVRDGSDWEKTLKPRLHTRLDNSKNIILFLSSITANSRALREEMNYG  104 (189)
T ss_dssp             GSTTH--HHHHHHHHHHHHCTTSSCCBTTTTCCCTTSCCCTTTTHHHHHHHHHHTEEEEEEECCTTCCCCHHHHHHHHHH
T ss_pred             ccchH--HHHHHHHHHHcCCCceeecchhhccccccccccHHHHHHHHHHHHHHhcCcEEEEEecCccccchhHHHHHHH
Confidence            44553  355666665444455555554 442       2 245889999999999999999999999999999999999


Q ss_pred             H-hh
Q 037311           89 L-EC   91 (93)
Q Consensus        89 ~-~~   91 (93)
                      + ++
T Consensus       105 i~~~  108 (189)
T 3hyn_A          105 IGTK  108 (189)
T ss_dssp             TTTT
T ss_pred             HHhc
Confidence            9 54

>2f62_A Nucleoside 2-deoxyribosyltransferase; SGPP, structural genomics, PSI, S genomics of pathogenic protozoa consortium; HET: 12M; 1.50A {Trypanosoma brucei} SCOP: c.23.14.1 PDB: 2a0k_A* 2f2t_A* 2f64_A* 2f67_A*

Probab=96.16  E-value=0.12  Score=32.78  Aligned_cols=69  Identities=12%  Similarity=0.099  Sum_probs=51.4

Q ss_pred             hhHHHHHHHHHhcCCceEEeec-cC-CCCcchHHHHHHHHHhCCEEEEEEcC--CCCCcHHHHHHHHHHHhhc
Q 037311           24 DNFTSHLYSALARQNIQTFIDD-QL-NRGDEISESLVKAIKASAISVIIFSE--DYASSRWCLDEFAEILECK   92 (93)
Q Consensus        24 ~~~~~~L~~~L~~~gi~v~~d~-~~-~~G~~~~~~i~~~i~~s~~~i~v~S~--~y~~S~wc~~El~~~~~~~   92 (93)
                      ..+...+.+.|++.|+.++.-. +- ..+..+.+.-.++|++|+++|++++|  .--.++=...|+..|....
T Consensus        26 ~~~~~~l~~~l~~~G~~v~~P~~~~~~~~~~i~~~d~~~i~~aD~vVA~ldpf~g~~~D~GTafEiGyA~Alg   98 (161)
T 2f62_A           26 ASYYNKVRELLKKENVMPLIPTDNEATEALDIRQKNIQMIKDCDAVIADLSPFRGHEPDCGTAFEVGCAAALN   98 (161)
T ss_dssp             HHHHHHHHHHHHTTTCEEECTTTTCCSSHHHHHHHHHHHHHHCSEEEEECCCCSSSSCCHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHCCCEEECCCccCcchHHHHHHHHHHHHHhCCEEEEEecCCCCCCCCCcHHHHHHHHHHCC
Confidence            3688999999999999988754 22 12234444557899999999999997  4445666889998887644

>2khz_A C-MYC-responsive protein RCL; flexible loop, nucleus, phosphoprotein, nuclear protein; NMR {Rattus norvegicus} PDB: 2klh_A*

Probab=93.71  E-value=0.76  Score=28.88  Aligned_cols=81  Identities=12%  Similarity=0.095  Sum_probs=52.8

Q ss_pred             CCcccEEEecccC-cC-ChhHHHHHHHHHhcCCceEEeeccCC-----CCc-------chHHHHHHHHHhCCEEEEEEcC
Q 037311            8 NKKYDVFVSFRGE-DI-RDNFTSHLYSALARQNIQTFIDDQLN-----RGD-------EISESLVKAIKASAISVIIFSE   73 (93)
Q Consensus         8 ~~~ydVFISy~~~-D~-~~~~~~~L~~~L~~~gi~v~~d~~~~-----~G~-------~~~~~i~~~i~~s~~~i~v~S~   73 (93)
                      ++...|||+=.-. +. .......+.+.|++.| .|..+....     .|.       .+...-.+.|++|+++|++++ 
T Consensus         9 ~~~~kVYLAGp~~~~~~~~~~~~~i~~~l~~~G-~V~~~~~~~p~~~~~g~~~~~~~~~i~~~d~~~i~~aD~vva~~~-   86 (165)
T 2khz_A            9 QAPCSVYFCGSIRGGREDQALYARIVSRLRRYG-KVLTEHVADAELEPLGEEAAGGDQFIHEQDLNWLQQADVVVAEVT-   86 (165)
T ss_dssp             CCCCEEEEECCCSSCSHHHHHHHHHHHHHHHHS-EESGGGTTTTSSSCCSTTSTTCHHHHHHHHHHHHHHCSEEEEECS-
T ss_pred             CCCeEEEEECCCCCcHHHHHHHHHHHHHHHhcC-CcccccccCchhhccccccccCHHHHHHHHHHHHHhCCEEEEECC-
Confidence            3445699984333 11 1224588889999999 776543221     221       123344578999999999997 


Q ss_pred             CCCCcHHHHHHHHHHHhhc
Q 037311           74 DYASSRWCLDEFAEILECK   92 (93)
Q Consensus        74 ~y~~S~wc~~El~~~~~~~   92 (93)
                        -.+.=+..|+..|....
T Consensus        87 --~~d~Gt~~EiGyA~alg  103 (165)
T 2khz_A           87 --QPSLGVGYELGRAVALG  103 (165)
T ss_dssp             --SCCHHHHHHHHHHHHTC
T ss_pred             --CCCCCHHHHHHHHHHCC
Confidence              56777999999887643

>4fyk_A Deoxyribonucleoside 5'-monophosphate N-glycosidas; hydrolas; HET: SRA; 1.79A {Rattus norvegicus} PDB: 4fyh_A* 4fyi_A* 2klh_A*

Probab=92.75  E-value=1.1  Score=28.15  Aligned_cols=77  Identities=17%  Similarity=0.210  Sum_probs=50.7

Q ss_pred             cEEEe--cccCcCChhHHHHHHHHHhcCCceEEeec----cC-CCC-------cchHHHHHHHHHhCCEEEEEEcCCCCC
Q 037311           12 DVFVS--FRGEDIRDNFTSHLYSALARQNIQTFIDD----QL-NRG-------DEISESLVKAIKASAISVIIFSEDYAS   77 (93)
Q Consensus        12 dVFIS--y~~~D~~~~~~~~L~~~L~~~gi~v~~d~----~~-~~G-------~~~~~~i~~~i~~s~~~i~v~S~~y~~   77 (93)
                      .|||+  +.+-+....+..++.+.|++.| .|+-..    ++ ..|       ..+.+.-.+.|++|+.+|++++   ..
T Consensus         4 kIYlAGP~f~~~e~~~~~~~i~~~L~~~G-~Vl~~hv~~~~l~~~g~~~~~~~~~i~~~d~~~i~~aD~vvA~l~---~~   79 (152)
T 4fyk_A            4 SVYFCGSIRGGREDQALYARIVSRLRRYG-KVLTEHVADAELEPLGEEAAGGDQFIHEQNLNWLQQADVVVAEVT---QP   79 (152)
T ss_dssp             EEEEECCSTTCCTTHHHHHHHHHHHTTTS-EECCCC-------------CCCHHHHHHHHHHHHHHCSEEEEECS---SC
T ss_pred             eEEEECCCCCcHHHHHHHHHHHHHHHHcC-cccccccCchhhhhccccccCCHHHHHHHHHHHHHHCCEEEEeCC---CC
Confidence            45665  3332223357789999999999 665322    11 111       2255666778999999999998   56


Q ss_pred             cHHHHHHHHHHHhhc
Q 037311           78 SRWCLDEFAEILECK   92 (93)
Q Consensus        78 S~wc~~El~~~~~~~   92 (93)
                      |.=...|+..|....
T Consensus        80 d~Gt~~EiG~A~alg   94 (152)
T 4fyk_A           80 SLGVGYELGRAVALG   94 (152)
T ss_dssp             CHHHHHHHHHHHHTT
T ss_pred             CCCHHHHHHHHHHcC
Confidence            777888998887654

>3ehd_A Uncharacterized conserved protein; PSI,MCSG,PF05014, structural genomics, protein structure INI midwest center for structural genomics; HET: MSE; 2.15A {Enterococcus faecalis}

Probab=92.08  E-value=1.4  Score=27.81  Aligned_cols=68  Identities=10%  Similarity=0.092  Sum_probs=48.7

Q ss_pred             hhHHHHHHHHHhcC--CceEEeec-cCC----CCcc----hHHHHHHHHHhCCEEEEEEcCCCCCcHHHHHHHHHHHhhc
Q 037311           24 DNFTSHLYSALARQ--NIQTFIDD-QLN----RGDE----ISESLVKAIKASAISVIIFSEDYASSRWCLDEFAEILECK   92 (93)
Q Consensus        24 ~~~~~~L~~~L~~~--gi~v~~d~-~~~----~G~~----~~~~i~~~i~~s~~~i~v~S~~y~~S~wc~~El~~~~~~~   92 (93)
                      ..+..++.++|+++  |+.++.-. +-.    ++..    +.+.=.++|++|+++|+++. ....++.+..|+..|....
T Consensus        19 ~~~~~~l~~~L~~~~~g~~v~~P~~~~~~~~~~~~~~~~~i~~~D~~~i~~aD~viA~ld-g~~~D~Gt~~EiG~A~a~g   97 (162)
T 3ehd_A           19 LRYNAYLVEQIRQLDKTIDLYLPQENAAINDKSAYADSKMIALADTENVLASDLLVALLD-GPTIDAGVASEIGVAYAKG   97 (162)
T ss_dssp             HHHHHHHHHHHHTTCTTEEEECGGGGSCCCCTTCCCCHHHHHHHHHHHHHTCSEEEEECC-SSSCCHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHhcCCCCEEECCCccccccccccchHHHHHHHHHHHHHHHCCEEEEECC-CCCCCCCHHHHHHHHHHCC
Confidence            35778899999875  89888754 221    2222    44445567999999999995 4457888999999887654

>1s2d_A Purine trans deoxyribosylase; ribosylate intermediate, PTD, ARAA, transferase; HET: AR4 ADE; 2.10A {Lactobacillus helveticus} SCOP: c.23.14.1 PDB: 1s2g_A* 1s2i_A* 1s2l_A 1s3f_A*

Probab=87.42  E-value=3.9  Score=25.81  Aligned_cols=78  Identities=10%  Similarity=0.160  Sum_probs=51.6

Q ss_pred             cEEEe---cccCcCChhHHHHHHHHHhcC--CceEEeec--cC--------CCC--------cchHHHHHHHHHhCCEEE
Q 037311           12 DVFVS---FRGEDIRDNFTSHLYSALARQ--NIQTFIDD--QL--------NRG--------DEISESLVKAIKASAISV   68 (93)
Q Consensus        12 dVFIS---y~~~D~~~~~~~~L~~~L~~~--gi~v~~d~--~~--------~~G--------~~~~~~i~~~i~~s~~~i   68 (93)
                      .||+.   |+..+  ..+..++.+.|++.  |+.++.-.  ..        ..|        ..+.+.=.++|++|+++|
T Consensus         9 kIYLAGP~F~~~~--~~~~~~~~~~L~~~~~g~~v~~P~~~~~~~~~~~~~~~~~~~~~~~~~~I~~~D~~~i~~aD~vV   86 (167)
T 1s2d_A            9 KIYLGSPFYSDAQ--RERAAKAKELLAKNPSIAHVFFPFDDGFTDPDEKNPEIGGIRSMVWRDATYQNDLTGISNATCGV   86 (167)
T ss_dssp             EEEEECCCSSHHH--HHHHHHHHHHHTTCTTEEEEECTTC-CCCCTTCC-CCTTSCCCHHHHHHHHHHHHHHHHHCSEEE
T ss_pred             EEEEECCCCCHHH--HHHHHHHHHHHHhCCCcCEEECCccccccccccccccccccCChHHHHHHHHHHHHHHHhCCEEE
Confidence            36665   33322  35778999999999  88888654  22        111        123444556799999999


Q ss_pred             EEEcCCCCCcHHHHHHHHHHHhhc
Q 037311           69 IIFSEDYASSRWCLDEFAEILECK   92 (93)
Q Consensus        69 ~v~S~~y~~S~wc~~El~~~~~~~   92 (93)
                      +++.+.- .++=...|+..|....
T Consensus        87 A~ldg~~-~D~GTa~EiGyA~alg  109 (167)
T 1s2d_A           87 FLYDMDQ-LDDGSAFXIGFMRAMH  109 (167)
T ss_dssp             EEEESSS-CCHHHHHHHHHHHHTT
T ss_pred             EECCCCC-CCCCceeehhhHhhCC
Confidence            9998644 4566778888876543

>2yvq_A Carbamoyl-phosphate synthase; conserved hypothetical protein, structural genomics, NPPSFA; 1.98A {Homo sapiens}

Probab=83.56  E-value=4.2  Score=24.79  Aligned_cols=61  Identities=11%  Similarity=0.131  Sum_probs=39.6

Q ss_pred             EEEecccCcCChhHHHHHHHHHhcCCceEEeec-----------------cCCCC-c-chHHHHHHHHHhCCEEEEEEcC
Q 037311           13 VFVSFRGEDIRDNFTSHLYSALARQNIQTFIDD-----------------QLNRG-D-EISESLVKAIKASAISVIIFSE   73 (93)
Q Consensus        13 VFISy~~~D~~~~~~~~L~~~L~~~gi~v~~d~-----------------~~~~G-~-~~~~~i~~~i~~s~~~i~v~S~   73 (93)
                      ||||....|.  .-+..+...|.+.|++++--.                 ++..| + .-.++|.+.|++-.+-++|.+|
T Consensus        27 vliSv~d~dK--~~l~~~a~~l~~lGf~i~AT~GTa~~L~~~Gi~v~~v~k~~egg~~~~~~~i~d~i~~g~i~lVInt~  104 (143)
T 2yvq_A           27 ILIGIQQSFR--PRFLGVAEQLHNEGFKLFATEATSDWLNANNVPATPVAWPSQEGQNPSLSSIRKLIRDGSIDLVINLP  104 (143)
T ss_dssp             EEEECCGGGH--HHHHHHHHHHHTTTCEEEEEHHHHHHHHHTTCCCEEECCGGGC-----CBCHHHHHHTTSCCEEEECC
T ss_pred             EEEEecccch--HHHHHHHHHHHHCCCEEEECchHHHHHHHcCCeEEEEEeccCCCcccccccHHHHHHCCCceEEEECC
Confidence            9999988764  344456678888888877211                 11112 1 0003688889999988888888


Q ss_pred             CC
Q 037311           74 DY   75 (93)
Q Consensus        74 ~y   75 (93)
                      +-
T Consensus       105 ~~  106 (143)
T 2yvq_A          105 NN  106 (143)
T ss_dssp             CC
T ss_pred             CC
Confidence            64

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	93
d1fyva_	161	c.23.2.1 (A:) Toll-like receptor 1, TLR1 {Human (H	1e-19
d1fyxa_	149	c.23.2.1 (A:) Toll-like receptor 2, TLR2 {Human (H	2e-15

>d1fyva_ c.23.2.1 (A:) Toll-like receptor 1, TLR1 {Human (Homo sapiens) [TaxId: 9606]} Length = 161

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Toll/Interleukin receptor TIR domain
family: Toll/Interleukin receptor TIR domain
domain: Toll-like receptor 1, TLR1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 75.9 bits (186), Expect = 1e-19
 Identities = 19/85 (22%), Positives = 38/85 (44%), Gaps = 2/85 (2%)

Query: 8  NKKYDVFVSFRGEDIRDNFTSHLYSALARQNIQTFIDDQ-LNRGDEISESLVKAIKASAI 66
          N ++  F+S+ G D      + L   L ++ +Q  + ++    G  I E+++  I+ S  
Sbjct: 10 NLQFHAFISYSGHD-SFWVKNELLPNLEKEGMQICLHERNFVPGKSIVENIITCIEKSYK 68

Query: 67 SVIIFSEDYASSRWCLDEFAEILEC 91
          S+ + S ++  S WC  E       
Sbjct: 69 SIFVLSPNFVQSEWCHYELYFAHHN 93

>d1fyxa_ c.23.2.1 (A:) Toll-like receptor 2, TLR2 {Human (Homo sapiens) [TaxId: 9606]} Length = 149

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Toll/Interleukin receptor TIR domain
family: Toll/Interleukin receptor TIR domain
domain: Toll-like receptor 2, TLR2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 64.7 bits (157), Expect = 2e-15
 Identities = 19/87 (21%), Positives = 35/87 (40%), Gaps = 4/87 (4%)

Query: 8  NKKYDVFVSFRGEDIRDNFTSHLYSAL--ARQNIQTFIDDQ-LNRGDEISESLVKAIKAS 64
          N  YD FVS+   D      + +   L       +  +  +    G  I ++++ +I+ S
Sbjct: 3  NICYDAFVSYSERD-AYWVENLMVQELENFNPPFKLCLHKRDFIHGKWIIDNIIDSIEKS 61

Query: 65 AISVIIFSEDYASSRWCLDEFAEILEC 91
            +V + SE++  S WC  E       
Sbjct: 62 HKTVFVLSENFVKSEWCKYELDFSHFR 88

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	93
d1fyva_	161	Toll-like receptor 1, TLR1 {Human (Homo sapiens) [	99.92
d1fyxa_	149	Toll-like receptor 2, TLR2 {Human (Homo sapiens) [	99.9
d2f62a1	152	Nucleoside 2-deoxyribosyltransferase {Trypanosoma	96.47
d1wu7a1	97	Histidyl-tRNA synthetase (HisRS), C-terminal domai	95.29
d1s2da_	167	Purine transdeoxyribosylase {Lactobacillus helveti	91.42
d1qe0a1	95	Histidyl-tRNA synthetase (HisRS), C-terminal domai	91.02
d1f8ya_	156	Nucleoside 2-deoxyribosyltransferase {Lactobacillu	89.48
d1kmma1	99	Histidyl-tRNA synthetase (HisRS), C-terminal domai	89.45
d1qf6a1	110	Threonyl-tRNA synthetase (ThrRS), C-terminal domai	88.48
d1atia1	111	Glycyl-tRNA synthetase (GlyRS), C-terminal domain	87.26
d1dlja3	108	UDP-glucose dehydrogenase (UDPGDH), C-terminal (UD	86.32
d1nyra1	113	Threonyl-tRNA synthetase (ThrRS), C-terminal domai	85.67
d1nj1a1	127	Prolyl-tRNA synthetase (ProRS) domain {Arhaeon (Me	83.58
d1vmea1	148	ROO-like flavoprotein TM0755, C-terminal domain {T	83.55
d1mv8a3	136	GDP-mannose 6-dehydrogenase, GDP-binding domain {P	82.22
d1g5ha1	127	The aaRS-like accessory subunit of mitochondrial p	80.49

>d1fyva_ c.23.2.1 (A:) Toll-like receptor 1, TLR1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Toll/Interleukin receptor TIR domain
family: Toll/Interleukin receptor TIR domain
domain: Toll-like receptor 1, TLR1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.92  E-value=2.6e-26  Score=146.72  Aligned_cols=85  Identities=22%  Similarity=0.484  Sum_probs=78.8

Q ss_pred             CCCCCcccEEEecccCcCChhHH-HHHHHHHhcCCceEEeec-cCCCCcchHHHHHHHHHhCCEEEEEEcCCCCCcHHHH
Q 037311            5 SRNNKKYDVFVSFRGEDIRDNFT-SHLYSALARQNIQTFIDD-QLNRGDEISESLVKAIKASAISVIIFSEDYASSRWCL   82 (93)
Q Consensus         5 ~~~~~~ydVFISy~~~D~~~~~~-~~L~~~L~~~gi~v~~d~-~~~~G~~~~~~i~~~i~~s~~~i~v~S~~y~~S~wc~   82 (93)
                      ...+++|||||||+++|.  .|| ..|...|+++|+++|+|+ ++.+|+.+.++|.++|++|+++|+|+||+|+.|+||.
T Consensus         7 ~~~~~~yDvFisys~~D~--~~v~~~L~~~Le~~g~~v~~d~~d~~~G~~~~~~i~~~i~~s~~~i~vlS~~~~~s~w~~   84 (161)
T d1fyva_           7 LQRNLQFHAFISYSGHDS--FWVKNELLPNLEKEGMQICLHERNFVPGKSIVENIITCIEKSYKSIFVLSPNFVQSEWCH   84 (161)
T ss_dssp             SSSCCCEEEEEECCGGGH--HHHHHTHHHHHHTTTCCEECTTTTCCTTSCHHHHHHHHHHHEEEEEEEESHHHHHHTSHH
T ss_pred             cCCCCeeEEEEecChhHH--HHHHHHHHHHHHhCCCcceEeccccccccccHHHHHHHHHhCCEEEEEecCccccChHHH
Confidence            456789999999999994  577 579999999999999999 9999999999999999999999999999999999999


Q ss_pred             HHHHHHHhh
Q 037311           83 DEFAEILEC   91 (93)
Q Consensus        83 ~El~~~~~~   91 (93)
                      .|+..|++.
T Consensus        85 ~E~~~a~~~   93 (161)
T d1fyva_          85 YELYFAHHN   93 (161)
T ss_dssp             HHHHTTSCC
T ss_pred             HHHHHHHHH
Confidence            999998754

>d1fyxa_ c.23.2.1 (A:) Toll-like receptor 2, TLR2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Toll/Interleukin receptor TIR domain
family: Toll/Interleukin receptor TIR domain
domain: Toll-like receptor 2, TLR2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.90  E-value=1e-25  Score=142.33  Aligned_cols=83  Identities=23%  Similarity=0.426  Sum_probs=75.4

Q ss_pred             CCCCcccEEEecccCcCChhHH-HHHHHHHhc--CCceEEeec-cCCCCcchHHHHHHHHHhCCEEEEEEcCCCCCcHHH
Q 037311            6 RNNKKYDVFVSFRGEDIRDNFT-SHLYSALAR--QNIQTFIDD-QLNRGDEISESLVKAIKASAISVIIFSEDYASSRWC   81 (93)
Q Consensus         6 ~~~~~ydVFISy~~~D~~~~~~-~~L~~~L~~--~gi~v~~d~-~~~~G~~~~~~i~~~i~~s~~~i~v~S~~y~~S~wc   81 (93)
                      +.++.|||||||+++|  +.|| ..|...|++  .|+++|+++ |+.+|+.+.++|.++|++|+++|+|+||+|++|+||
T Consensus         1 ~~~~~YDvFiSys~~D--~~~V~~~l~~~LE~~~~g~~~~~~~rd~~~G~~~~~~i~~~i~~S~~~i~vlS~~~l~s~wc   78 (149)
T d1fyxa_           1 SRNICYDAFVSYSERD--AYWVENLMVQELENFNPPFKLCLHKRDFIHGKWIIDNIIDSIEKSHKTVFVLSENFVKSEWC   78 (149)
T ss_dssp             CCSCCEEEEEECCGGG--HHHHHTHHHHHHTTSSSCCCEEEHHHHCCSSSCHHHHHHHHHHHEEEEEEEECHHHHHHHTH
T ss_pred             CCCCEEEEEEECchhh--HHHHHHHHHHHHHhcCCCceEEEecccccccchHHHHHHHHHHhCCEEEEEEcCccccccch
Confidence            4678999999999999  4677 468999986  499999999 999999999999999999999999999999999999


Q ss_pred             HHHHHHHHh
Q 037311           82 LDEFAEILE   90 (93)
Q Consensus        82 ~~El~~~~~   90 (93)
                      ..|+..|+.
T Consensus        79 ~~E~~~a~~   87 (149)
T d1fyxa_          79 KYELDFSHF   87 (149)
T ss_dssp             HHHSCCSCC
T ss_pred             HHHHHHHHH
Confidence            999987653

>d2f62a1 c.23.14.1 (A:9-160) Nucleoside 2-deoxyribosyltransferase {Trypanosoma brucei [TaxId: 5691]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: N-(deoxy)ribosyltransferase-like
family: N-deoxyribosyltransferase
domain: Nucleoside 2-deoxyribosyltransferase
species: Trypanosoma brucei [TaxId: 5691]

Probab=96.47  E-value=0.014  Score=35.31  Aligned_cols=73  Identities=14%  Similarity=0.149  Sum_probs=54.4

Q ss_pred             cCChhHHHHHHHHHhcCCceEEeec--cCCCCcchHHHHHHHHHhCCEEEEEEcC--CCCCcHHHHHHHHHHHhhcC
Q 037311           21 DIRDNFTSHLYSALARQNIQTFIDD--QLNRGDEISESLVKAIKASAISVIIFSE--DYASSRWCLDEFAEILECKK   93 (93)
Q Consensus        21 D~~~~~~~~L~~~L~~~gi~v~~d~--~~~~G~~~~~~i~~~i~~s~~~i~v~S~--~y~~S~wc~~El~~~~~~~~   93 (93)
                      |....+..++.+.|++.|+.++.-.  .......|.+.-.+.|++|+.+|++++|  .--.++=+..|+..|....|
T Consensus        15 d~~~~~~~~i~~~l~~~g~~~~~P~d~~~~~~~~If~~d~~~i~~~D~VIA~Ld~frg~~~D~GTa~EiG~A~algK   91 (152)
T d2f62a1          15 DMGASYYNKVRELLKKENVMPLIPTDNEATEALDIRQKNIQMIKDCDAVIADLSPFRGHEPDCGTAFEVGCAAALNK   91 (152)
T ss_dssp             TTTHHHHHHHHHHHHTTTCEEECTTTTCCSSHHHHHHHHHHHHHHCSEEEEECCCCSSSSCCHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHHHHHHHHCCCEEeccccccchhHHHHHHHHHHHHHhCCEEEEEccccCCCCCCchHHHHHHHHHHCCC
Confidence            3335688899999999999998754  3333344667777899999999999985  33456678899988876543

>d1wu7a1 c.51.1.1 (A:330-426) Histidyl-tRNA synthetase (HisRS), C-terminal domain {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: Alpha and beta proteins (a/b)
fold: Anticodon-binding domain-like
superfamily: Class II aaRS ABD-related
family: Anticodon-binding domain of Class II aaRS
domain: Histidyl-tRNA synthetase (HisRS), C-terminal domain
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=95.29  E-value=0.066  Score=29.38  Aligned_cols=60  Identities=17%  Similarity=0.179  Sum_probs=43.6

Q ss_pred             CcccEEEecccCcCChhHHHHHHHHHhcCCceEEeeccCCCCcchHHHHHHHHHhCCEEEEEEc
Q 037311            9 KKYDVFVSFRGEDIRDNFTSHLYSALARQNIQTFIDDQLNRGDEISESLVKAIKASAISVIIFS   72 (93)
Q Consensus         9 ~~ydVFISy~~~D~~~~~~~~L~~~L~~~gi~v~~d~~~~~G~~~~~~i~~~i~~s~~~i~v~S   72 (93)
                      ...+|||..-++.. ...+..|...|++.|+++-+|.   .+..+...+..|-..--.+++++-
T Consensus         2 ~~~~V~i~~~g~~~-~~~~~~l~~~Lr~~gi~v~~d~---~~~~l~kq~~~A~~~~~~~~iiiG   61 (97)
T d1wu7a1           2 EKKSVYICRVGKIN-SSIMNEYSRKLRERGMNVTVEI---MERGLSAQLKYASAIGADFAVIFG   61 (97)
T ss_dssp             SSCEEEEEEESSCC-HHHHHHHHHHHHTTTCEEEECC---SCCCHHHHHHHHHHTTCSEEEEEE
T ss_pred             CCceEEEEEeCHHH-HHHHHHHHHHHHHCCCEEEEEC---CCCcHHHHHHHHHhcCCCeEEecC
Confidence            46789999888765 4788999999999999999975   234566677777654444444443

>d1s2da_ c.23.14.1 (A:) Purine transdeoxyribosylase {Lactobacillus helveticus [TaxId: 1587]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: N-(deoxy)ribosyltransferase-like
family: N-deoxyribosyltransferase
domain: Purine transdeoxyribosylase
species: Lactobacillus helveticus [TaxId: 1587]

Probab=91.42  E-value=0.8  Score=27.29  Aligned_cols=82  Identities=11%  Similarity=0.088  Sum_probs=50.6

Q ss_pred             cccEEEecccC-cCChhHHHHHHHHHhcCC--ceEEeec-c-C--------CCC----c----chHHHHHHHHHhCCEEE
Q 037311           10 KYDVFVSFRGE-DIRDNFTSHLYSALARQN--IQTFIDD-Q-L--------NRG----D----EISESLVKAIKASAISV   68 (93)
Q Consensus        10 ~ydVFISy~~~-D~~~~~~~~L~~~L~~~g--i~v~~d~-~-~--------~~G----~----~~~~~i~~~i~~s~~~i   68 (93)
                      +..|||+=.-- +....+..++.+.|+++|  +.+|.-. + .        +.+    .    .+...=.++|++|+++|
T Consensus         7 ~~kIYLAgP~F~~~~~~~~~~~~~~L~~~~~~~~v~~P~~~~~~~~~~~~~~~~~~~~~~~~~~If~~D~~~i~~sD~vI   86 (167)
T d1s2da_           7 TGKIYLGSPFYSDAQRERAAKAKELLAKNPSIAHVFFPFDDGFTDPDEKNPEIGGIRSMVWRDATYQNDLTGISNATCGV   86 (167)
T ss_dssp             CEEEEEECCCSSHHHHHHHHHHHHHHTTCTTEEEEECTTC-CCCCTTCC-CCTTSCCCHHHHHHHHHHHHHHHHHCSEEE
T ss_pred             CceEEEECCCCCHHHHHHHHHHHHHHHhCCCcceEECCcccccccccccccccccccchHHHHHHHHHHHHHHHHCCEEE
Confidence            45577763211 122467889999999887  5666422 1 1        011    1    13334456899999999


Q ss_pred             EEEcCCCCCcHHHHHHHHHHHhhc
Q 037311           69 IIFSEDYASSRWCLDEFAEILECK   92 (93)
Q Consensus        69 ~v~S~~y~~S~wc~~El~~~~~~~   92 (93)
                      +++..... +.=...|+..|.-..
T Consensus        87 A~ldg~~~-D~GTa~EiG~A~a~g  109 (167)
T d1s2da_          87 FLYDMDQL-DDGSAFEIGFMRAMH  109 (167)
T ss_dssp             EEEESSSC-CHHHHHHHHHHHHTT
T ss_pred             EEeCCCCC-CccHHHHHHHHHHCC
Confidence            99987654 445777888877554

>d1qe0a1 c.51.1.1 (A:326-420) Histidyl-tRNA synthetase (HisRS), C-terminal domain {Staphylococcus aureus [TaxId: 1280]}

class: Alpha and beta proteins (a/b)
fold: Anticodon-binding domain-like
superfamily: Class II aaRS ABD-related
family: Anticodon-binding domain of Class II aaRS
domain: Histidyl-tRNA synthetase (HisRS), C-terminal domain
species: Staphylococcus aureus [TaxId: 1280]

Probab=91.02  E-value=0.33  Score=26.11  Aligned_cols=60  Identities=20%  Similarity=0.303  Sum_probs=42.0

Q ss_pred             CcccEEEecccCcCChhHHHHHHHHHhcCCceEEeeccCCCCcchHHHHHHHHHhCCEEEEEEc
Q 037311            9 KKYDVFVSFRGEDIRDNFTSHLYSALARQNIQTFIDDQLNRGDEISESLVKAIKASAISVIIFS   72 (93)
Q Consensus         9 ~~ydVFISy~~~D~~~~~~~~L~~~L~~~gi~v~~d~~~~~G~~~~~~i~~~i~~s~~~i~v~S   72 (93)
                      ...||||.--+.+. ...+..|...|++.|+++-+|.   .+..+...+..|-+.--..++++-
T Consensus         3 ~~~dv~ii~~~~~~-~~~a~~i~~~Lr~~gi~v~~d~---~~~~l~kq~~~A~~~~~~~~iiiG   62 (95)
T d1qe0a1           3 ENLDLFIVTMGDQA-DRYAVKLLNHLRHNGIKADKDY---LQRKIKGQMKQADRLGAKFTIVIG   62 (95)
T ss_dssp             CCCSEEEEECHHHH-HHHHHHHHHHHHTTTCCEEECC---SCCCHHHHHHHHHHTTCSEEEEEC
T ss_pred             CCCeEEEEEeCHHH-HHHHHHHHHHHHHCCCcEEecC---CCCCHHHHHHHHHhcCCCEEEEEc
Confidence            45789887655443 4678899999999999998874   334566677777665544555544

>d1f8ya_ c.23.14.1 (A:) Nucleoside 2-deoxyribosyltransferase {Lactobacillus leichmannii [TaxId: 28039]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: N-(deoxy)ribosyltransferase-like
family: N-deoxyribosyltransferase
domain: Nucleoside 2-deoxyribosyltransferase
species: Lactobacillus leichmannii [TaxId: 28039]

Probab=89.48  E-value=0.92  Score=26.84  Aligned_cols=80  Identities=13%  Similarity=0.109  Sum_probs=50.2

Q ss_pred             cccEEEe---cccCcCChhHHHHHHHHHhcC----CceEEeec-----cCCCC--------cc----hHHHHHHHHHhCC
Q 037311           10 KYDVFVS---FRGEDIRDNFTSHLYSALARQ----NIQTFIDD-----QLNRG--------DE----ISESLVKAIKASA   65 (93)
Q Consensus        10 ~ydVFIS---y~~~D~~~~~~~~L~~~L~~~----gi~v~~d~-----~~~~G--------~~----~~~~i~~~i~~s~   65 (93)
                      +..||+.   |+..+  ..+..++.+.|++.    |+.+|.-.     +...+        ..    +...=.++|++|+
T Consensus         2 ~k~IYlAgP~F~~~q--~~~~~~~~~~L~~~~~~~~~~vf~P~~~~~~~~~~~~~~~~~~~~~~a~~If~~D~~~i~~aD   79 (156)
T d1f8ya_           2 KKTIYFGAGWFTDRQ--NKAYKEAMEALKENPTIDLENSYVPLDNQYKGIRVDEHPEYLHDKVWATATYNNDLNGIKTND   79 (156)
T ss_dssp             CBCEEEECCCSSHHH--HHHHHHHHHHHHHCTTBCCTTSBCGGGCSGGGCCTTTCGGGGGCHHHHHHHHHHHHHHHHTSS
T ss_pred             CceEEEECCCCCHHH--HHHHHHHHHHHHhccccCCceEeCCccccccccccccccccccchHHHHHHHHHHHHHHHHCC
Confidence            3456665   33333  46778899999873    56666532     11211        11    3344467899999


Q ss_pred             EEEEEEcCCCCCcHHHHHHHHHHHhhc
Q 037311           66 ISVIIFSEDYASSRWCLDEFAEILECK   92 (93)
Q Consensus        66 ~~i~v~S~~y~~S~wc~~El~~~~~~~   92 (93)
                      ++|+++.... .++=+..|+..|....
T Consensus        80 ~via~ldg~~-~D~Gta~EiG~A~a~g  105 (156)
T d1f8ya_          80 IMLGVYIPDE-EDVGLGMELGYALSQG  105 (156)
T ss_dssp             EEEEECCGGG-CCHHHHHHHHHHHHTT
T ss_pred             EEEEEeCCCC-CCCCHHHHHHHHHHcC
Confidence            9999988653 3455778888877544

>d1kmma1 c.51.1.1 (A:326-424) Histidyl-tRNA synthetase (HisRS), C-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Anticodon-binding domain-like
superfamily: Class II aaRS ABD-related
family: Anticodon-binding domain of Class II aaRS
domain: Histidyl-tRNA synthetase (HisRS), C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=89.45  E-value=0.66  Score=25.03  Aligned_cols=59  Identities=15%  Similarity=0.282  Sum_probs=40.2

Q ss_pred             CcccEEEecccCcCChhHHHHHHHHHhcC--CceEEeeccCCCCcchHHHHHHHHHhCCEEEEEE
Q 037311            9 KKYDVFVSFRGEDIRDNFTSHLYSALARQ--NIQTFIDDQLNRGDEISESLVKAIKASAISVIIF   71 (93)
Q Consensus         9 ~~ydVFISy~~~D~~~~~~~~L~~~L~~~--gi~v~~d~~~~~G~~~~~~i~~~i~~s~~~i~v~   71 (93)
                      ...||||-.-+.+. ...+..|...|++.  |+++-+|.   .+..+...+..|-+.--..++++
T Consensus         2 p~vdv~vi~~~~~~-~~~a~~la~~LR~~~~gi~v~~~~---~~~~l~kq~k~A~~~~~~~~iii   62 (99)
T d1kmma1           2 PVVDIYLVASGADT-QSAAMALAERLRDELPGVKLMTNH---GGGNFKKQFARADKWGARVAVVL   62 (99)
T ss_dssp             CSCSEEEECCSTTH-HHHHHHHHHHHHHHSTTCCEEECC---SCCCHHHHHHHHHHHTCSEEEEC
T ss_pred             CCCEEEEEECCHHH-HHHHHHHHHHHHhcCCCeEEEEeC---CCCCHHHHHHHHHHhCCChhhhc
Confidence            35789888766554 46778899999875  99998874   23466677777766444444443

>d1qf6a1 c.51.1.1 (A:533-642) Threonyl-tRNA synthetase (ThrRS), C-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Anticodon-binding domain-like
superfamily: Class II aaRS ABD-related
family: Anticodon-binding domain of Class II aaRS
domain: Threonyl-tRNA synthetase (ThrRS), C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=88.48  E-value=1.1  Score=24.58  Aligned_cols=48  Identities=13%  Similarity=0.214  Sum_probs=34.1

Q ss_pred             hhHHHHHHHHHhcCCceEEeeccCCCCcchHHHHHHHHHhCCEEEEEEcCC
Q 037311           24 DNFTSHLYSALARQNIQTFIDDQLNRGDEISESLVKAIKASAISVIIFSED   74 (93)
Q Consensus        24 ~~~~~~L~~~L~~~gi~v~~d~~~~~G~~~~~~i~~~i~~s~~~i~v~S~~   74 (93)
                      ..++..|...|+..||++.+|.   .+..+...+.++-..---.++++.+.
T Consensus        20 ~~~a~~i~~~Lr~~gi~v~~d~---~~~~l~~ki~~a~~~g~p~~iiiG~~   67 (110)
T d1qf6a1          20 SEYVNELTQKLSNAGIRVKADL---RNEKIGFKIREHTLRRVPYMLVCGDK   67 (110)
T ss_dssp             HHHHHHHHHHHHTTTCCEEEEC---CSSCHHHHHHHHHHTTCSEEEEECTT
T ss_pred             HHHHHHHHHHHHHhhccccccC---CccchhHHHHHHHHcCCCEEEEECch
Confidence            4688999999999999999986   22345556666665555556666655

>d1atia1 c.51.1.1 (A:395-505) Glycyl-tRNA synthetase (GlyRS), C-terminal domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: Anticodon-binding domain-like
superfamily: Class II aaRS ABD-related
family: Anticodon-binding domain of Class II aaRS
domain: Glycyl-tRNA synthetase (GlyRS), C-terminal domain
species: Thermus thermophilus [TaxId: 274]

Probab=87.26  E-value=0.11  Score=29.18  Aligned_cols=33  Identities=12%  Similarity=0.167  Sum_probs=27.0

Q ss_pred             ChhHHHHHHHHHhcCCceEEeec-cCCCCcchHH
Q 037311           23 RDNFTSHLYSALARQNIQTFIDD-QLNRGDEISE   55 (93)
Q Consensus        23 ~~~~~~~L~~~L~~~gi~v~~d~-~~~~G~~~~~   55 (93)
                      -..++..|+..|...|+++.+|+ +-.+|..+.+
T Consensus        19 ~~~~a~~l~~~L~~~gi~v~~Ddr~~~~G~K~~~   52 (111)
T d1atia1          19 ITEYAKRLKARLLALGLGRVLYEDTGNIGKAYRR   52 (111)
T ss_dssp             HHHHHHHHHHHHHTTCSSCEEECCCSCHHHHHHH
T ss_pred             HHHHHHHHHhhhccccceeEeecCCCCHHHHHHH
Confidence            35788999999999999999998 7777765543

>d1dlja3 c.26.3.1 (A:295-402) UDP-glucose dehydrogenase (UDPGDH), C-terminal (UDP-binding) domain {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: Adenine nucleotide alpha hydrolase-like
superfamily: UDP-glucose/GDP-mannose dehydrogenase C-terminal domain
family: UDP-glucose/GDP-mannose dehydrogenase C-terminal domain
domain: UDP-glucose dehydrogenase (UDPGDH), C-terminal (UDP-binding) domain
species: Streptococcus pyogenes [TaxId: 1314]

Probab=86.32  E-value=0.51  Score=26.23  Aligned_cols=53  Identities=19%  Similarity=0.301  Sum_probs=38.7

Q ss_pred             eccc--CcCChhHHHHHHHHHhcCCceEEeec-cCC-----CCcchHHHHHHHHHhCCEEE
Q 037311           16 SFRG--EDIRDNFTSHLYSALARQNIQTFIDD-QLN-----RGDEISESLVKAIKASAISV   68 (93)
Q Consensus        16 Sy~~--~D~~~~~~~~L~~~L~~~gi~v~~d~-~~~-----~G~~~~~~i~~~i~~s~~~i   68 (93)
                      +|..  .|.|++-+-.|.+.|...|+.+...+ -+.     .+..+..++.+++..|+++|
T Consensus        24 ~fK~n~dD~R~Sp~i~ii~~L~~~g~~v~iyDP~v~~~~~~~~~~~~~~l~~~~~~sDiII   84 (108)
T d1dlja3          24 IMKSNSDNFRESAIKDVIDILKSKDIKIIIYEPMLNKLESEDQSVLVNDLENFKKQANIIV   84 (108)
T ss_dssp             CSSTTCSCCTTCHHHHHHHHHHTSSCEEEEECTTCSCCCTTCCSEECCCHHHHHHHCSEEE
T ss_pred             EECCCCcchhhhhHHHHHHHHhccccceeeecCCcChhHhccCCEEEeCHHHHHhhCCEEE
Confidence            5543  57788888899999999999988865 332     23334567889999999543

>d1nyra1 c.51.1.1 (A:533-645) Threonyl-tRNA synthetase (ThrRS), C-terminal domain {Staphylococcus aureus [TaxId: 1280]}

class: Alpha and beta proteins (a/b)
fold: Anticodon-binding domain-like
superfamily: Class II aaRS ABD-related
family: Anticodon-binding domain of Class II aaRS
domain: Threonyl-tRNA synthetase (ThrRS), C-terminal domain
species: Staphylococcus aureus [TaxId: 1280]

Probab=85.67  E-value=0.67  Score=25.71  Aligned_cols=45  Identities=20%  Similarity=0.248  Sum_probs=30.0

Q ss_pred             hhHHHHHHHHHhcCCceEEeec-cCCCCcchHHHHHHHHHhCCEEEEEEc
Q 037311           24 DNFTSHLYSALARQNIQTFIDD-QLNRGDEISESLVKAIKASAISVIIFS   72 (93)
Q Consensus        24 ~~~~~~L~~~L~~~gi~v~~d~-~~~~G~~~~~~i~~~i~~s~~~i~v~S   72 (93)
                      ..++..|++.|++.||++.+|. +-..|.    .+.++-..---+++++-
T Consensus        27 ~~~a~~l~~~Lr~~gi~v~~D~~~~~~g~----k~~~a~~~g~p~~iiiG   72 (113)
T d1nyra1          27 YDYARQLQDELKSQGVRVSIDDRNEKMGY----KIREAQMQKIPYQIVVG   72 (113)
T ss_dssp             HHHHHHHHHHHHTTTCCEEECCSSCCHHH----HHHHHHHHTCSEEEEEC
T ss_pred             hhhHHHHHHHhhhhccceeecccccccch----HHHHHHHhCceEEEEEc
Confidence            3588999999999999999987 555454    44555443333444443

>d1nj1a1 c.51.1.1 (A:284-410) Prolyl-tRNA synthetase (ProRS) domain {Arhaeon (Methanothermobacter thermautotrophicus) [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: Anticodon-binding domain-like
superfamily: Class II aaRS ABD-related
family: Anticodon-binding domain of Class II aaRS
domain: Prolyl-tRNA synthetase (ProRS) domain
species: Arhaeon (Methanothermobacter thermautotrophicus) [TaxId: 145262]

Probab=83.58  E-value=0.33  Score=27.71  Aligned_cols=31  Identities=19%  Similarity=0.277  Sum_probs=25.0

Q ss_pred             hhHHHHHHHHHhcCCceEEeec-cCCCCcchH
Q 037311           24 DNFTSHLYSALARQNIQTFIDD-QLNRGDEIS   54 (93)
Q Consensus        24 ~~~~~~L~~~L~~~gi~v~~d~-~~~~G~~~~   54 (93)
                      ..++..|+..|++.||+|-+|. +..+|..+.
T Consensus        29 ~~~a~~l~~~L~~~gi~v~~D~r~~~~g~K~~   60 (127)
T d1nj1a1          29 MEACRELRSRLEAAGFRVHLDDRDIRAGRKYY   60 (127)
T ss_dssp             HHHHHHHHHHHHTTTCCEEECCCSSCHHHHHH
T ss_pred             HHHHHHHHHHHHhcCCceEEEeccchHHHHHH
Confidence            4678999999999999999998 666665433

>d1vmea1 c.23.5.1 (A:251-398) ROO-like flavoprotein TM0755, C-terminal domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Flavoproteins
family: Flavodoxin-related
domain: ROO-like flavoprotein TM0755, C-terminal domain
species: Thermotoga maritima [TaxId: 2336]

Probab=83.55  E-value=1.2  Score=25.28  Aligned_cols=62  Identities=18%  Similarity=0.256  Sum_probs=38.0

Q ss_pred             EEEecccCcCChhHHHHHHHHHhcCCceEEeec-cCCCCcchHHHHHHHHHhCCEEEEEEcCCCCCc
Q 037311           13 VFVSFRGEDIRDNFTSHLYSALARQNIQTFIDD-QLNRGDEISESLVKAIKASAISVIIFSEDYASS   78 (93)
Q Consensus        13 VFISy~~~D~~~~~~~~L~~~L~~~gi~v~~d~-~~~~G~~~~~~i~~~i~~s~~~i~v~S~~y~~S   78 (93)
                      +|-|-.+.-  +.+|..|.+.|.+.|+.+-+-+ .-....++. .+...+.+++ .|++.||.|..+
T Consensus         9 iY~S~tGnT--e~~A~~i~~~l~~~g~~v~~~~~~~~~~~~~~-~~~~~l~~~d-~iiigspt~~~~   71 (148)
T d1vmea1           9 IYDSMYGFV--ENVMKKAIDSLKEKGFTPVVYKFSDEERPAIS-EILKDIPDSE-ALIFGVSTYEAE   71 (148)
T ss_dssp             EEECSSSHH--HHHHHHHHHHHHHTTCEEEEEEECSSCCCCHH-HHHHHSTTCS-EEEEEECEETTE
T ss_pred             EEECCCcHH--HHHHHHHHHHHHhCCCeEEEEecccccccchh-HhhhhHHHCC-EeEEEecccCCc
Confidence            345554432  5789999999999999877654 222233333 4445566666 445566766543

>d1mv8a3 c.26.3.1 (A:301-436) GDP-mannose 6-dehydrogenase, GDP-binding domain {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: Adenine nucleotide alpha hydrolase-like
superfamily: UDP-glucose/GDP-mannose dehydrogenase C-terminal domain
family: UDP-glucose/GDP-mannose dehydrogenase C-terminal domain
domain: GDP-mannose 6-dehydrogenase, GDP-binding domain
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=82.22  E-value=0.36  Score=27.72  Aligned_cols=56  Identities=21%  Similarity=0.293  Sum_probs=38.1

Q ss_pred             eccc--CcCChhHHHHHHHHHhcCCceEEeec-cCC----CCc--------------chHHHHHHHHHhCCEEEEEE
Q 037311           16 SFRG--EDIRDNFTSHLYSALARQNIQTFIDD-QLN----RGD--------------EISESLVKAIKASAISVIIF   71 (93)
Q Consensus        16 Sy~~--~D~~~~~~~~L~~~L~~~gi~v~~d~-~~~----~G~--------------~~~~~i~~~i~~s~~~i~v~   71 (93)
                      ||..  .|.|++-+..|...|..+|+.|...+ -+.    .+.              ...+++.+++.+++++|+..
T Consensus        22 afK~~t~D~R~Sps~~li~~L~~~g~~V~~~DP~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~i~~~D~ivi~t   98 (136)
T d1mv8a3          22 SFKAGTDDLRESPLVELAEMLIGKGYELRIFDRNVEYARVHGANKEYIESKIPHVSSLLVSDLDEVVASSDVLVLGN   98 (136)
T ss_dssp             SSSTTCCCCTTCHHHHHHHHHHHTTCEEEEECHHHHHHTTSSSCHHHHHHTSHHHHTTBCSCHHHHHHHCSEEEECS
T ss_pred             EECCCCcchhcCHHHHHHHHHhhhhccccccCCCCCHHHHhhhhhhhhhhccccccceeehhhhhhhhhceEEEEEe
Confidence            5543  57788999999999999999988875 221    111              11235677889998665543

>d1g5ha1 c.51.1.1 (A:343-469) The aaRS-like accessory subunit of mitochondrial polymerase gamma, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: Anticodon-binding domain-like
superfamily: Class II aaRS ABD-related
family: Anticodon-binding domain of Class II aaRS
domain: The aaRS-like accessory subunit of mitochondrial polymerase gamma, C-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=80.49  E-value=2.7  Score=23.53  Aligned_cols=49  Identities=12%  Similarity=0.125  Sum_probs=31.5

Q ss_pred             hhHHHHHHHHHhcCCceEEeec-cCCCCcchHHHHHHHHHhCCEEEEEEcC
Q 037311           24 DNFTSHLYSALARQNIQTFIDD-QLNRGDEISESLVKAIKASAISVIIFSE   73 (93)
Q Consensus        24 ~~~~~~L~~~L~~~gi~v~~d~-~~~~G~~~~~~i~~~i~~s~~~i~v~S~   73 (93)
                      ..++..|++.|++.|++++.+. |- .+..+...+.++-..---+++++.+
T Consensus        28 ~~~a~~l~~~L~~~gi~v~~~~~D~-~~~~lg~k~~~a~~~giP~~iiiG~   77 (127)
T d1g5ha1          28 RQVCQGLLNELLENGISVWPGYSET-VHSSLEQLHSKYDEMSVLFSVLVTE   77 (127)
T ss_dssp             HHHHHHHHHHHHHTTCCEEEGGGSC-CCSCHHHHHHHHHHTTCSEEEEECH
T ss_pred             HHHHHHHHHHHHHhcCceeeeeecC-CCcCHHHHHHHHHHhCCcEEEEEcC
Confidence            3578899999999999998754 33 2344555556655544444455443