Citrus Sinensis ID: 037325
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 598 | 2.2.26 [Sep-21-2011] | |||||||
| Q9FL28 | 1173 | LRR receptor-like serine/ | no | no | 0.892 | 0.455 | 0.311 | 5e-45 | |
| Q42371 | 976 | LRR receptor-like serine/ | no | no | 0.811 | 0.496 | 0.318 | 1e-43 | |
| Q9LRT1 | 1016 | Probably inactive leucine | no | no | 0.817 | 0.481 | 0.311 | 8e-43 | |
| C0LGW6 | 966 | LRR receptor-like serine/ | no | no | 0.821 | 0.508 | 0.312 | 1e-42 | |
| Q9FRS6 | 1029 | Leucine-rich repeat recep | no | no | 0.832 | 0.483 | 0.294 | 2e-42 | |
| C0LGX3 | 993 | LRR receptor-like serine/ | no | no | 0.836 | 0.503 | 0.287 | 2e-41 | |
| Q9LP24 | 1120 | Probable leucine-rich rep | no | no | 0.879 | 0.469 | 0.308 | 4e-41 | |
| Q9LVP0 | 1102 | Probable leucine-rich rep | no | no | 0.877 | 0.476 | 0.313 | 5e-41 | |
| Q9SHI2 | 1101 | Leucine-rich repeat recep | no | no | 0.862 | 0.468 | 0.301 | 6e-41 | |
| Q9FIZ3 | 1252 | LRR receptor-like serine/ | no | no | 0.827 | 0.395 | 0.306 | 3e-40 |
| >sp|Q9FL28|FLS2_ARATH LRR receptor-like serine/threonine-protein kinase FLS2 OS=Arabidopsis thaliana GN=FLS2 PE=1 SV=1 | Back alignment and function desciption |
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Score = 182 bits (463), Expect = 5e-45, Method: Compositional matrix adjust.
Identities = 190/609 (31%), Positives = 287/609 (47%), Gaps = 75/609 (12%)
Query: 26 IQLGSGCQEAERKALLQFKQSL-RDPSGQLSSW--VGE-DCCSWSGVSCNNRTASVIKLN 81
I L E E +AL FK + DP G LS W +G C+W+G++C++ T V+ ++
Sbjct: 20 IALAKQSFEPEIEALKSFKNGISNDPLGVLSDWTIIGSLRHCNWTGITCDS-TGHVVSVS 78
Query: 82 LNNPFRDSFGSFEDDAGHELGGEISPSLLQLKDLEYLDLSMNNFTGFQVPEFIGSLKELR 141
L +L G +SP++ L L+ LDL+ N+FTG ++P IG L EL
Sbjct: 79 L--------------LEKQLEGVLSPAIANLTYLQVLDLTSNSFTG-KIPAEIGKLTELN 123
Query: 142 YLNLSGSFFSGTIPQTLGNLSNLLYLDLNNFLDQSNQIDLEWLSGLSSLVYFNLGGADLS 201
L L ++FSG+IP + L N+ YLDL N L + E + SSLV +L+
Sbjct: 124 QLILYLNYFSGSIPSGIWELKNIFYLDLRNNLLSGDVP--EEICKTSSLVLIGFDYNNLT 181
Query: 202 KAGAYWLEVFNKLHSFVEL--HLPNCNLPSLPLSFPSLNFASLQVLDLSNNDFNSTTPHW 259
L L FV HL S+P+S +L A+L LDLS N P
Sbjct: 182 GKIPECLGDLVHLQMFVAAGNHLTG----SIPVSIGTL--ANLTDLDLSGNQLTGKIPRD 235
Query: 260 LFNITSLLCLDLGSNDLQGDIPDGFASLNSLQELDLSGNSFLGGQLSRNLGKLCNLRTMI 319
N+ +L L L N L+GDIP + +SL +L+L N L G++ LG L L+ +
Sbjct: 236 FGNLLNLQSLVLTENLLEGDIPAEIGNCSSLVQLELYDNQ-LTGKIPAELGNLVQLQALR 294
Query: 320 LSRNNISSEVSDFLDGLSECTNSIL------------------LEKLELRFNQFTGILPI 361
+ +N ++S + L L++ T+ L LE L L N FTG P
Sbjct: 295 IYKNKLTSSIPSSLFRLTQLTHLGLSENHLVGPISEEIGFLESLEVLTLHSNNFTGEFPQ 354
Query: 362 SLGSLKNLRHLVLWQNSFLGSIPPSIGNLTLLKELYLASNQMNGQKISDSYQHLKNQTEL 421
S+ +L+NL L + N+ G +P +G LT L+ L N + G S + N T L
Sbjct: 355 SITNLRNLTVLTVGFNNISGELPADLGLLTNLRNLSAHDNLLTGPIPSS----ISNCTGL 410
Query: 422 RTLVLNKARISDTISDWFWQLSLTLDELDVAYNELRGRVPNSLGFNFPAKVDLSF--NNF 479
+ L L+ +++ I F +++LT + + N G +P+ + FN LS NN
Sbjct: 411 KLLDLSHNQMTGEIPRGFGRMNLTF--ISIGRNHFTGEIPDDI-FNCSNLETLSVADNNL 467
Query: 480 EGRLLLWSFNVTKLYLRD---NSFSGLIPNDIGQ----NLPFL----------TDLGNLK 522
G L + KL + NS +G IP +IG N+ +L ++ NL
Sbjct: 468 TGTLKPLIGKLQKLRILQVSYNSLTGPIPREIGNLKDLNILYLHSNGFTGRIPREMSNLT 527
Query: 523 QLITLVISNNNLSGEIPLLFSNISFLYILDMSNNSLSGSTPESIGSLRTVKFLVLRNNYL 582
L L + +N+L G IP ++ L +LD+SNN SG P L ++ +L L+ N
Sbjct: 528 LLQGLRMYSNDLEGPIPEEMFDMKLLSVLDLSNNKFSGQIPALFSKLESLTYLSLQGNKF 587
Query: 583 SGKLPLSLK 591
+G +P SLK
Sbjct: 588 NGSIPASLK 596
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Constitutes the pattern-recognition receptor (PPR) that determines the specific perception of flagellin (flg22), a potent elicitor of the defense response to pathogen-associated molecular patterns (PAMPs). Flagellin-binding to the receptor is the first step to initiate the innate immune MAP kinase signaling cascade (MEKK1, MKK4/MKK5 and MPK3/MPK6), resulting in enhanced resistance against pathogens. Binding to the effector AvrPto1 from Pseudomonas syringae blocks the downstream plant immune response. Arabidopsis thaliana (taxid: 3702) EC: 2EC: .EC: 7EC: .EC: 1EC: 1EC: .EC: 1 |
| >sp|Q42371|ERECT_ARATH LRR receptor-like serine/threonine-protein kinase ERECTA OS=Arabidopsis thaliana GN=ERECTA PE=1 SV=1 | Back alignment and function description |
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Score = 178 bits (451), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 181/569 (31%), Positives = 269/569 (47%), Gaps = 84/569 (14%)
Query: 36 ERKALLQFKQSLRDPSGQLSSWV---GEDCCSWSGVSCNNRTASVIKLNLNNPFRDSFGS 92
E LL+ K+S +D + L W D C W GVSC N T +V+ LNL++
Sbjct: 26 EGATLLEIKKSFKDVNNVLYDWTTSPSSDYCVWRGVSCENVTFNVVALNLSD-------- 77
Query: 93 FEDDAGHELGGEISPSLLQLKDLEYLDLSMNNFTGFQVPEFIGSLKELRYLNLSGSFFSG 152
L GEISP++ LK L +DL N +G Q+P+ IG L+ L+LS + SG
Sbjct: 78 ------LNLDGEISPAIGDLKSLLSIDLRGNRLSG-QIPDEIGDCSSLQNLDLSFNELSG 130
Query: 153 TIPQTLGNLSNLLYLDLNNFLDQSNQIDLEWLSGLSSLVYFNLGGADLSKAG-------- 204
IP ++ L L L L N NQ+ S LS + NL DL++
Sbjct: 131 DIPFSISKLKQLEQLILKN-----NQLIGPIPSTLSQIP--NLKILDLAQNKLSGEIPRL 183
Query: 205 AYWLEVFNKLHSFVELHLPNCNLPSLPLSFPSLNFASLQVLDLSNNDFNSTTPHWLFNIT 264
YW EV L L NL +S L D+ NN + P + N T
Sbjct: 184 IYWNEVLQYLG------LRGNNLVG-NISPDLCQLTGLWYFDVRNNSLTGSIPETIGNCT 236
Query: 265 SLLCLDLGSNDLQGDIPDGFASLNSLQELDLSGNSFLGGQLSRNLGKLCNLRTMILSRNN 324
+ LDL N L G+IP L + L L GN L G++ +G + L + LS N
Sbjct: 237 AFQVLDLSYNQLTGEIPFDIGFL-QVATLSLQGNQ-LSGKIPSVIGLMQALAVLDLSGNL 294
Query: 325 ISSEVSDFLDGLSECTNSILLEKLELRFNQFTGILPISLGSLKNLRHLVLWQNSFLGSIP 384
+S + L L+ EKL L N+ TG +P LG++ L +L L N G IP
Sbjct: 295 LSGSIPPILGNLT------FTEKLYLHSNKLTGSIPPELGNMSKLHYLELNDNHLTGHIP 348
Query: 385 PSIGNLTLLKELYLASNQMNGQKISDSYQHLKNQTELRTLVLNKARISDTISDWFWQLSL 444
P +G LT L +L +A+N + G I D HL + T L +L ++ + S TI F +L
Sbjct: 349 PELGKLTDLFDLNVANNDLEG-PIPD---HLSSCTNLNSLNVHGNKFSGTIPRAFQKLE- 403
Query: 445 TLDELDVAYNELRGRVPNSLGFNFPAKVDLSFNNFEGRLLLWSFNVTKLYLRDNSFSGLI 504
++ L+++ N ++G +P V+LS R+ N+ L L +N +G+I
Sbjct: 404 SMTYLNLSSNNIKGPIP----------VELS------RI----GNLDTLDLSNNKINGII 443
Query: 505 PNDIGQNLPFLTDLGNLKQLITLVISNNNLSGEIPLLFSNISFLYILDMSNNSLSGSTPE 564
P + LG+L+ L+ + +S N+++G +P F N+ + +D+SNN +SG PE
Sbjct: 444 P----------SSLGDLEHLLKMNLSRNHITGVVPGDFGNLRSIMEIDLSNNDISGPIPE 493
Query: 565 SIGSLRTVKFLVLRNNYLSGKLPLSLKNC 593
+ L+ + L L NN L+G + SL NC
Sbjct: 494 ELNQLQNIILLRLENNNLTGNVG-SLANC 521
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Receptor kinase that, together with ERL1 and ERL2, regulates aerial architecture, including inflorescence (e.g. shoot apical meristem-originating organ shape, elongation of the internode and pedicels, and adaxial-abaxial polarity), and stomatal patterning (e.g. density and clustering), probably by tuning cell division and expansion. Modulates plant transpiration efficiency by controlling stomatal density, leaf photosynthetic capacity, epidermal cell expansion, mesophyll cell proliferation and cell-cell contact. Probable major trait regulating canalization (maintenance of phenotype despite varying environment) in many aspect of the plant physiology (e.g. plant morphology, light-dependent leaves number, branch number, flowering time, phytate and mineral concentrations) by transducing microenvironmental variation into phenotypic differentiation (ecological amplifier). May maintain development integrity in heat stress conditions. Regulates cell wall composition and structure. Confers resistance to the pathogenic bacteria Ralstonia solanacearum and to the necrotrophic fungi Plectosphaerella cucumerina and Pythium irregulare, and required for callose deposition upon infection. Resistance to P.cucumerina seems cell wall-mediated. Arabidopsis thaliana (taxid: 3702) EC: 2 EC: . EC: 7 EC: . EC: 1 EC: 1 EC: . EC: 1 |
| >sp|Q9LRT1|Y3804_ARATH Probably inactive leucine-rich repeat receptor-like protein kinase At3g28040 OS=Arabidopsis thaliana GN=At3g28040 PE=2 SV=1 | Back alignment and function description |
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Score = 175 bits (444), Expect = 8e-43, Method: Compositional matrix adjust.
Identities = 187/600 (31%), Positives = 283/600 (47%), Gaps = 111/600 (18%)
Query: 39 ALLQFKQSLRDPSGQLSSWVGED--CCSWSGVSCNNRTASVIKLNLNNPFRDSFGSFEDD 96
L+ FK L DP L SW +D CSWS V CN +T+ VI+L+L+
Sbjct: 39 GLIVFKSDLNDPFSHLESWTEDDNTPCSWSYVKCNPKTSRVIELSLD------------- 85
Query: 97 AGHELGGEISPSLLQLKDLEYLDLSMNNFTGFQVPEFIGSLK---ELRYLNLSGSFFSGT 153
G L G+I+ + +L+ L+ L LS NNFTG I +L L+ L+LS + SG
Sbjct: 86 -GLALTGKINRGIQKLQRLKVLSLSNNNFTGN-----INALSNNNHLQKLDLSHNNLSGQ 139
Query: 154 IPQTLGNLSNLLYLDL--NNFLDQSNQIDLEWLSGLSSLVYFNLGGADLSKAGAYWLEVF 211
IP +LG++++L +LDL N+F S + + + SSL Y +L
Sbjct: 140 IPSSLGSITSLQHLDLTGNSF---SGTLSDDLFNNCSSLRYLSLS--------------- 181
Query: 212 NKLHSFVELHLPNCNLPSLPLSFPSLNFASLQVLDLSNNDF--NSTTPHWLFNITSLLCL 269
H+ +E +P+ + L L+LS N F N + ++ + L L
Sbjct: 182 ---HNHLEGQIPST----------LFRCSVLNSLNLSRNRFSGNPSFVSGIWRLERLRAL 228
Query: 270 DLGSNDLQGDIPDGFASLNSLQELDLSGNSFLGGQLSRNLGKLCNLRTMILSRNNISSEV 329
DL SN L G IP G SL++L+EL L N F G L ++G +L + LS N+ S E+
Sbjct: 229 DLSSNSLSGSIPLGILSLHNLKELQLQRNQF-SGALPSDIGLCPHLNRVDLSSNHFSGEL 287
Query: 330 SDFLDGLSECTNSILLEKLELRFNQFTGILPISLGSLKNLRHLVLWQNSFLGSIPPSIGN 389
L L L ++ N +G P +G + L HL N G +P SI N
Sbjct: 288 PRTLQKLKS------LNHFDVSNNLLSGDFPPWIGDMTGLVHLDFSSNELTGKLPSSISN 341
Query: 390 LTLLKELYLASNQMNGQKISDSYQHLKNQTELRTLVLNKARISDTISDWFWQLSL----- 444
L LK+L L+ N+++G+ + +S + K EL + L S I D F+ L L
Sbjct: 342 LRSLKDLNLSENKLSGE-VPESLESCK---ELMIVQLKGNDFSGNIPDGFFDLGLQEMDF 397
Query: 445 ------------------TLDELDVAYNELRGRVPNSLG-FNFPAKVDLSFNNFEGRL-- 483
+L LD+++N L G +P +G F ++LS+N+F R+
Sbjct: 398 SGNGLTGSIPRGSSRLFESLIRLDLSHNSLTGSIPGEVGLFIHMRYLNLSWNHFNTRVPP 457
Query: 484 -LLWSFNVTKLYLRDNSFSGLIPNDI--GQNLPFLT------------DLGNLKQLITLV 528
+ + N+T L LR+++ G +P DI Q+L L +GN L L
Sbjct: 458 EIEFLQNLTVLDLRNSALIGSVPADICESQSLQILQLDGNSLTGSIPEGIGNCSSLKLLS 517
Query: 529 ISNNNLSGEIPLLFSNISFLYILDMSNNSLSGSTPESIGSLRTVKFLVLRNNYLSGKLPL 588
+S+NNL+G IP SN+ L IL + N LSG P+ +G L+ + + + N L G+LPL
Sbjct: 518 LSHNNLTGPIPKSLSNLQELKILKLEANKLSGEIPKELGDLQNLLLVNVSFNRLIGRLPL 577
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Arabidopsis thaliana (taxid: 3702) |
| >sp|C0LGW6|ERL1_ARATH LRR receptor-like serine/threonine-protein kinase ERL1 OS=Arabidopsis thaliana GN=ERL1 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 175 bits (443), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 176/564 (31%), Positives = 262/564 (46%), Gaps = 73/564 (12%)
Query: 36 ERKALLQFKQSLRDPSGQLSSW---VGEDCCSWSGVSCNNRTASVIKLNLNNPFRDSFGS 92
E KAL+ K S + L W D CSW GV C+N + SV+ LNL
Sbjct: 29 EGKALMAIKGSFSNLVNMLLDWDDVHNSDLCSWRGVFCDNVSYSVVSLNL---------- 78
Query: 93 FEDDAGHELGGEISPSLLQLKDLEYLDLSMNNFTGFQVPEFIGSLKELRYLNLSGSFFSG 152
+ LGGEISP++ L++L+ +DL N G Q+P+ IG+ L YL+LS + G
Sbjct: 79 ----SSLNLGGEISPAIGDLRNLQSIDLQGNKLAG-QIPDEIGNCASLVYLDLSENLLYG 133
Query: 153 TIPQTLGNLSNLLYLDLNNFLDQSNQIDLEWLSGLSSLVYFNLGGADLSKAGA---YWLE 209
IP ++ L L L+L N +Q L+ + +L +L G L+ + YW E
Sbjct: 134 DIPFSISKLKQLETLNLKN--NQLTGPVPATLTQIPNLKRLDLAGNHLTGEISRLLYWNE 191
Query: 210 VFNKLHSFVELHLPNCNLPSLPLSFPSLNFASLQVLDLSNNDFNSTTPHWLFNITSLLCL 269
V L N+ + LS L D+ N+ T P + N TS L
Sbjct: 192 VLQYLGL-------RGNMLTGTLSSDMCQLTGLWYFDVRGNNLTGTIPESIGNCTSFQIL 244
Query: 270 DLGSNDLQGDIPDGFASLNSLQELDLSGNSFLGGQLSRNLGKLCNLRTMILSRNNISSEV 329
D+ N + G+IP L + L L GN L G++ +G + L + LS N + +
Sbjct: 245 DISYNQITGEIPYNIGFL-QVATLSLQGNR-LTGRIPEVIGLMQALAVLDLSDNELVGPI 302
Query: 330 SDFLDGLSECTNSILLEKLELRFNQFTGILPISLGSLKNLRHLVLWQNSFLGSIPPSIGN 389
L LS KL L N TG +P LG++ L +L L N +G+IPP +G
Sbjct: 303 PPILGNLS------FTGKLYLHGNMLTGPIPSELGNMSRLSYLQLNDNKLVGTIPPELGK 356
Query: 390 LTLLKELYLASNQMNGQKISDSYQHLKNQTELRTLVLNKARISDTISDWFWQLSLTLDEL 449
L L EL LA+N++ G S+ + + L ++ +S +I F L +L L
Sbjct: 357 LEQLFELNLANNRLVGPIPSN----ISSCAALNQFNVHGNLLSGSIPLAFRNLG-SLTYL 411
Query: 450 DVAYNELRGRVPNSLGFNFPAKVDLSFNNFEGRLLLWSFNVTKLYLRDNSFSGLIPNDIG 509
+++ N +G++P LG N+ KL L N+FSG IP
Sbjct: 412 NLSSNNFKGKIPVELGH--------------------IINLDKLDLSGNNFSGSIP---- 447
Query: 510 QNLPFLTDLGNLKQLITLVISNNNLSGEIPLLFSNISFLYILDMSNNSLSGSTPESIGSL 569
LG+L+ L+ L +S N+LSG++P F N+ + ++D+S N LSG P +G L
Sbjct: 448 ------LTLGDLEHLLILNLSRNHLSGQLPAEFGNLRSIQMIDVSFNLLSGVIPTELGQL 501
Query: 570 RTVKFLVLRNNYLSGKLPLSLKNC 593
+ + L+L NN L GK+P L NC
Sbjct: 502 QNLNSLILNNNKLHGKIPDQLTNC 525
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Receptor kinase that regulates inflorescence architecture and organ shape as well as stomatal patterning, including density and clustering, together with ER and ERL2. Arabidopsis thaliana (taxid: 3702) EC: 2 EC: . EC: 7 EC: . EC: 1 EC: 1 EC: . EC: 1 |
| >sp|Q9FRS6|PXL1_ARATH Leucine-rich repeat receptor-like protein kinase PXL1 OS=Arabidopsis thaliana GN=PXL1 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 174 bits (441), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 185/628 (29%), Positives = 286/628 (45%), Gaps = 130/628 (20%)
Query: 33 QEAERKALLQFKQSLRDPSGQLSSWVGED---------CCSWSGVSCNNRTASVIKLNLN 83
Q +E++ LL FK L DPS L W + C W+GV C+ V KL L+
Sbjct: 27 QNSEQEILLAFKSDLFDPSNNLQDWKRPENATTFSELVHCHWTGVHCD-ANGYVAKLLLS 85
Query: 84 NPFRDSFGSFEDDAGHELGGEISPSLLQLKDLEYLDLSMNNFTGFQVPEFIGSLKELRYL 143
N L G +S + L+ LDLS N F +P+ + +L L+ +
Sbjct: 86 N--------------MNLSGNVSDQIQSFPSLQALDLSNNAFES-SLPKSLSNLTSLKVI 130
Query: 144 NLSGSFFSGTIPQTLGNLSNLLYLDL--NNFLDQSNQIDLEWLSGLSSLVYFNLGGADLS 201
++S + F GT P LG + L +++ NNF S + +LG A
Sbjct: 131 DVSVNSFFGTFPYGLGMATGLTHVNASSNNF---------------SGFLPEDLGNATT- 174
Query: 202 KAGAYWLEVFNKLHSFVELHLPNCNLPSLPLSFPSLNFASLQVLDLSNNDFNSTTPHWLF 261
LEV + + E S+P SF N +L+ L LS N+F P +
Sbjct: 175 ------LEVLDFRGGYFE--------GSVPSSFK--NLKNLKFLGLSGNNFGGKVPKVIG 218
Query: 262 NITSLLCLDLGSNDLQGDIPDGFASLNSLQELDLS-GNSFLGGQLSRNLGKLCNLRTMIL 320
++SL + LG N G+IP+ F L LQ LDL+ GN L GQ+ +LG+L L T+ L
Sbjct: 219 ELSSLETIILGYNGFMGEIPEEFGKLTRLQYLDLAVGN--LTGQIPSSLGQLKQLTTVYL 276
Query: 321 SRNNISSEVSDFLDGLS----------ECTNSILLEKLELR--------FNQFTGILPIS 362
+N ++ ++ L G++ + T I +E EL+ NQ TGI+P
Sbjct: 277 YQNRLTGKLPRELGGMTSLVFLDLSDNQITGEIPMEVGELKNLQLLNLMRNQLTGIIPSK 336
Query: 363 LGSLKNLRHLVLWQNSFLGSIPPSIGNLTLLKELYLASNQMNGQKISDSYQHLKNQTEL- 421
+ L NL L LWQNS +GS+P +G + LK L ++SN+++G I + +N T+L
Sbjct: 337 IAELPNLEVLELWQNSLMGSLPVHLGKNSPLKWLDVSSNKLSGD-IPSGLCYSRNLTKLI 395
Query: 422 -----------------RTLV---LNKARISDTISDWFWQLSLTLDELDVAYNELRGRVP 461
TLV + K IS +I L + L L++A N L G++P
Sbjct: 396 LFNNSFSGQIPEEIFSCPTLVRVRIQKNHISGSIPAGSGDLPM-LQHLELAKNNLTGKIP 454
Query: 462 NSLGFNFPAKVDLSFNNFEGRLLLWSF-------NVTKLYLRDNSFSGLIPNDIGQNLPF 514
+ + + LSF + L N+ N+F+G IPN I Q+ P
Sbjct: 455 DDIALS----TSLSFIDISFNHLSSLSSSIFSSPNLQTFIASHNNFAGKIPNQI-QDRPS 509
Query: 515 LTDL---------------GNLKQLITLVISNNNLSGEIPLLFSNISFLYILDMSNNSLS 559
L+ L + ++L++L + +N L GEIP + + L +LD+SNNSL+
Sbjct: 510 LSVLDLSFNHFSGGIPERIASFEKLVSLNLKSNQLVGEIPKALAGMHMLAVLDLSNNSLT 569
Query: 560 GSTPESIGSLRTVKFLVLRNNYLSGKLP 587
G+ P +G+ T++ L + N L G +P
Sbjct: 570 GNIPADLGASPTLEMLNVSFNKLDGPIP 597
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Involved in the regulation of procambium maintenance and polarity during vascular-tissue development. Arabidopsis thaliana (taxid: 3702) EC: 2 EC: . EC: 7 EC: . EC: 1 EC: 1 EC: . EC: 1 |
| >sp|C0LGX3|HSL2_ARATH LRR receptor-like serine/threonine-protein kinase HSL2 OS=Arabidopsis thaliana GN=HSL2 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 170 bits (431), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 169/587 (28%), Positives = 271/587 (46%), Gaps = 87/587 (14%)
Query: 44 KQSLRDPSGQLSSWV----GEDCCSWSGVSCNNRTASVIKL--------NLNNPFRDSFG 91
K L DP G L WV C+W+G++C+ R S + + N++ F F
Sbjct: 36 KTRLFDPDGNLQDWVITGDNRSPCNWTGITCHIRKGSSLAVTTIDLSGYNISGGFPYGFC 95
Query: 92 SFEDD-----AGHELGGEISPSLLQL-KDLEYLDLSMNNFTGFQVPEFIGSLKELRYLNL 145
+ + L G I + L L L+ L L+ NNF+G ++PEF ++LR L L
Sbjct: 96 RIRTLINITLSQNNLNGTIDSAPLSLCSKLQNLILNQNNFSG-KLPEFSPEFRKLRVLEL 154
Query: 146 SGSFFSGTIPQTLGNLSNLLYLDLNNFLDQSNQIDLEWLSGLSSLVYFNLGGADLSKAGA 205
+ F+G IPQ+ G L+ L L+LN + LS +V LG
Sbjct: 155 ESNLFTGEIPQSYGRLTALQVLNLNG-------------NPLSGIVPAFLG--------- 192
Query: 206 YWLEVFNKLHSFVELHLPNCNLPSLPLSFPSLNFASLQVLDLSNNDFNSTTPHWLFNITS 265
L L L + P+ N ++L L L++++ P + N+
Sbjct: 193 -------YLTELTRLDLAYISFDPSPIPSTLGNLSNLTDLRLTHSNLVGEIPDSIMNLVL 245
Query: 266 LLCLDLGSNDLQGDIPDGFASLNSLQELDLSGNSFLGGQLSRNLGKLCNLRTMILSRNNI 325
L LDL N L G+IP+ L S+ +++L N L G+L ++G L LR +S+NN+
Sbjct: 246 LENLDLAMNSLTGEIPESIGRLESVYQIELYDNR-LSGKLPESIGNLTELRNFDVSQNNL 304
Query: 326 SSEVSD----------------FLDGLSECT--NSILLEKLELRFNQFTGILPISLGSLK 367
+ E+ + F GL + N L+E ++ N FTG LP +LG
Sbjct: 305 TGELPEKIAALQLISFNLNDNFFTGGLPDVVALNPNLVE-FKIFNNSFTGTLPRNLGKFS 363
Query: 368 NLRHLVLWQNSFLGSIPPSIGNLTLLKELYLASNQMNGQKISDSYQHLKNQTELRTLVLN 427
+ + N F G +PP + L+++ SNQ++G+ I +SY + +R +
Sbjct: 364 EISEFDVSTNRFSGELPPYLCYRRKLQKIITFSNQLSGE-IPESYGDCHSLNYIR---MA 419
Query: 428 KARISDTISDWFWQLSLTLDELDVAYNELRGRVPNSLG-FNFPAKVDLSFNNFEGRLLLW 486
++S + FW+L LT EL N+L+G +P S+ +++++S NNF G + +
Sbjct: 420 DNKLSGEVPARFWELPLTRLEL-ANNNQLQGSIPPSISKARHLSQLEISANNFSGVIPVK 478
Query: 487 SFNVTKLYLRD---NSFSGLIPNDIGQNLPFLTDLGNLKQLITLVISNNNLSGEIPLLFS 543
++ L + D NSF G IP+ I + LK L + + N L GEIP S
Sbjct: 479 LCDLRDLRVIDLSRNSFLGSIPSCINK----------LKNLERVEMQENMLDGEIPSSVS 528
Query: 544 NISFLYILDMSNNSLSGSTPESIGSLRTVKFLVLRNNYLSGKLPLSL 590
+ + L L++SNN L G P +G L + +L L NN L+G++P L
Sbjct: 529 SCTELTELNLSNNRLRGGIPPELGDLPVLNYLDLSNNQLTGEIPAEL 575
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Receptor-like serine/threonine-kinase acting on substrates that controls floral organ abscission. Regulated by the 'INFLORESCENCE DEFICIENT IN ABSCISSION' (IDA) family of ligands. Arabidopsis thaliana (taxid: 3702) EC: 2 EC: . EC: 7 EC: . EC: 1 EC: 1 EC: . EC: 1 |
| >sp|Q9LP24|Y1571_ARATH Probable leucine-rich repeat receptor-like protein kinase At1g35710 OS=Arabidopsis thaliana GN=At1g35710 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 169 bits (429), Expect = 4e-41, Method: Compositional matrix adjust.
Identities = 198/641 (30%), Positives = 298/641 (46%), Gaps = 115/641 (17%)
Query: 35 AERKALLQFKQSLRDPSGQLSSWVGE-------DCCSWSGVSCNNRTASVIKLNLNNPFR 87
AE ALL++K + + S +LSSWV + C SW GVSCN+R S+ +LNL N
Sbjct: 32 AEANALLKWKSTFTN-SSKLSSWVHDANTNTSFSCTSWYGVSCNSR-GSIEELNLTNTGI 89
Query: 88 DSFGSFEDDAGHELGGEISPSLLQLKDLEYLDLSMNNFTGFQVPEFIGSLKELRYLNLSG 147
+ G+F+D + L +L Y+DLSMN +G P+F G+L +L Y +LS
Sbjct: 90 E--GTFQDFP-----------FISLSNLAYVDLSMNLLSGTIPPQF-GNLSKLIYFDLST 135
Query: 148 SFFSGTIPQTLGNLSNLLYLDLN-NFLDQSNQIDLEWLSGLSSLVYF--NLGGADLSKAG 204
+ +G I +LGNL NL L L+ N+L +L + ++ L L G+ S G
Sbjct: 136 NHLTGEISPSLGNLKNLTVLYLHQNYLTSVIPSELGNMESMTDLALSQNKLTGSIPSSLG 195
Query: 205 AYWLEVFNKLHSFVELHLPNCNLPS-LPLSFPSL-NFASLQVLDLSNNDFNSTTPHWLFN 262
L + + L+L L +P P L N S+ L LS N + P L N
Sbjct: 196 --------NLKNLMVLYLYENYLTGVIP---PELGNMESMTDLALSQNKLTGSIPSTLGN 244
Query: 263 ITSLLCLDLGSNDLQGDIPDGFASLNSLQELDLSGNSFLGGQLSRNLGKLCNLRTMILSR 322
+ +L+ L L N L G IP ++ S+ L LS N L G + +LG L NL + L +
Sbjct: 245 LKNLMVLYLYENYLTGVIPPEIGNMESMTNLALSQNK-LTGSIPSSLGNLKNLTLLSLFQ 303
Query: 323 NNISSEVSDFLDGLSECTNSILLEKLELRFNQFTGILPISLGSLKNLRHLVLWQNSFLGS 382
N ++ + L + + LEL N+ TG +P SLG+LKNL L L++N G
Sbjct: 304 NYLTGGIPPKLGNIESMID------LELSNNKLTGSIPSSLGNLKNLTILYLYENYLTGV 357
Query: 383 IPPSIGNLTLLKELYLASNQMNGQKISDSY---------------------QHLKNQTEL 421
IPP +GN+ + +L L +N++ G I S+ Q L N +
Sbjct: 358 IPPELGNMESMIDLQLNNNKLTGS-IPSSFGNLKNLTYLYLYLNYLTGVIPQELGNMESM 416
Query: 422 RTLVLNKARISDTISDWFWQLSLTLDELDVAYNELRGRVP-----------------NSL 464
L L++ +++ ++ D F + L+ L + N L G +P N
Sbjct: 417 INLDLSQNKLTGSVPDSFGNFT-KLESLYLRVNHLSGAIPPGVANSSHLTTLILDTNNFT 475
Query: 465 GFNFPAKV---------DLSFNNFEGRL---LLWSFNVTKLYLRDNSFSGLIPNDIG--Q 510
GF FP V L +N+ EG + L ++ + N F+G I G
Sbjct: 476 GF-FPETVCKGRKLQNISLDYNHLEGPIPKSLRDCKSLIRARFLGNKFTGDIFEAFGIYP 534
Query: 511 NLPFLTDLGNLK-------------QLITLVISNNNLSGEIPLLFSNISFLYILDMSNNS 557
+L F+ D + K +L L++SNNN++G IP N++ L LD+S N+
Sbjct: 535 DLNFI-DFSHNKFHGEISSNWEKSPKLGALIMSNNNITGAIPTEIWNMTQLVELDLSTNN 593
Query: 558 LSGSTPESIGSLRTVKFLVLRNNYLSGKLPLSLKNCTFQES 598
L G PE+IG+L + L L N LSG++P L T ES
Sbjct: 594 LFGELPEAIGNLTNLSRLRLNGNQLSGRVPAGLSFLTNLES 634
|
Arabidopsis thaliana (taxid: 3702) EC: 2 EC: . EC: 7 EC: . EC: 1 EC: 1 EC: . EC: 1 |
| >sp|Q9LVP0|Y5639_ARATH Probable leucine-rich repeat receptor-like protein kinase At5g63930 OS=Arabidopsis thaliana GN=At5g63930 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 169 bits (429), Expect = 5e-41, Method: Compositional matrix adjust.
Identities = 189/602 (31%), Positives = 281/602 (46%), Gaps = 77/602 (12%)
Query: 36 ERKALLQFKQSLRDPSGQLSSWVGEDC--CSWSGVSCNNRTA--SVIKLNLNNPFRDSFG 91
E + LL+ K D L +W D C W+GV C+N ++ V+ LNL++
Sbjct: 30 EGQYLLEIKSKFVDAKQNLRNWNSNDSVPCGWTGVMCSNYSSDPEVLSLNLSSMV----- 84
Query: 92 SFEDDAGHELGGEISPSLLQLKDLEYLDLSMNNFTGFQVPEFIGSLKELRYLNLSGSFFS 151
L G++SPS+ L L+ LDLS N +G ++P+ IG+ L L L+ + F
Sbjct: 85 ---------LSGKLSPSIGGLVHLKQLDLSYNGLSG-KIPKEIGNCSSLEILKLNNNQFD 134
Query: 152 GTIPQTLGNLSNLLYLDL-NNFLDQSNQIDLEWLSGLSSLVYF--NLGGA-DLSKAGAYW 207
G IP +G L +L L + NN + S +++ L LS LV + N+ G S
Sbjct: 135 GEIPVEIGKLVSLENLIIYNNRISGSLPVEIGNLLSLSQLVTYSNNISGQLPRSIGNLKR 194
Query: 208 LEVFNKLHSFVELHLPN----C-NLPSLPLSFPSLN---------FASLQVLDLSNNDFN 253
L F + + LP+ C +L L L+ L+ L + L N+F+
Sbjct: 195 LTSFRAGQNMISGSLPSEIGGCESLVMLGLAQNQLSGELPKEIGMLKKLSQVILWENEFS 254
Query: 254 STTPHWLFNITSLLCLDLGSNDLQGDIPDGFASLNSLQELDLSGNSFLGGQLSRNLGKLC 313
P + N TSL L L N L G IP L SL+ L L N L G + R +G L
Sbjct: 255 GFIPREISNCTSLETLALYKNQLVGPIPKELGDLQSLEFLYLYRNG-LNGTIPREIGNLS 313
Query: 314 NLRTMILSRNNISSEVS---DFLDGLS-------ECTNSILLE--------KLELRFNQF 355
+ S N ++ E+ ++GL + T +I +E KL+L N
Sbjct: 314 YAIEIDFSENALTGEIPLELGNIEGLELLYLFENQLTGTIPVELSTLKNLSKLDLSINAL 373
Query: 356 TGILPISLGSLKNLRHLVLWQNSFLGSIPPSIGNLTLLKELYLASNQMNGQKISDSYQHL 415
TG +P+ L+ L L L+QNS G+IPP +G + L L ++ N ++G+ S +L
Sbjct: 374 TGPIPLGFQYLRGLFMLQLFQNSLSGTIPPKLGWYSDLWVLDMSDNHLSGRIPS----YL 429
Query: 416 KNQTELRTLVLNKARISDTISDWFWQLSLTLDELDVAYNELRGRVPNSL--GFNFPAKVD 473
+ + L L +S I TL +L +A N L GR P++L N A ++
Sbjct: 430 CLHSNMIILNLGTNNLSGNIPTGITTCK-TLVQLRLARNNLVGRFPSNLCKQVNVTA-IE 487
Query: 474 LSFNNFEGRLLLWSFNVT---KLYLRDNSFSGLIPNDIGQNLPFLTDLGNLKQLITLVIS 530
L N F G + N + +L L DN F+G +P +IG L QL TL IS
Sbjct: 488 LGQNRFRGSIPREVGNCSALQRLQLADNGFTGELPREIGM----------LSQLGTLNIS 537
Query: 531 NNNLSGEIPLLFSNISFLYILDMSNNSLSGSTPESIGSLRTVKFLVLRNNYLSGKLPLSL 590
+N L+GE+P N L LDM N+ SG+ P +GSL ++ L L NN LSG +P++L
Sbjct: 538 SNKLTGEVPSEIFNCKMLQRLDMCCNNFSGTLPSEVGSLYQLELLKLSNNNLSGTIPVAL 597
Query: 591 KN 592
N
Sbjct: 598 GN 599
|
Arabidopsis thaliana (taxid: 3702) EC: 2 EC: . EC: 7 EC: . EC: 1 EC: 1 EC: . EC: 1 |
| >sp|Q9SHI2|Y1723_ARATH Leucine-rich repeat receptor-like serine/threonine-protein kinase At1g17230 OS=Arabidopsis thaliana GN=At1g17230 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 169 bits (428), Expect = 6e-41, Method: Compositional matrix adjust.
Identities = 179/594 (30%), Positives = 276/594 (46%), Gaps = 78/594 (13%)
Query: 36 ERKALLQFKQSLRDPSGQLSSW--VGEDCCSWSGVSCNN-RTASVIKLNLNNPFRDSFGS 92
E + LL+FK L D +G L+SW + + C+W+G++C + RT + + LN
Sbjct: 27 EGRVLLEFKAFLNDSNGYLASWNQLDSNPCNWTGIACTHLRTVTSVDLN----------- 75
Query: 93 FEDDAGHELGGEISPSLLQLKDLEYLDLSMNNFTGFQVPEFIGSLKELRYLNLSGSFFSG 152
G L G +SP + +L L L++S N +G +P+ + + L L+L + F G
Sbjct: 76 -----GMNLSGTLSPLICKLHGLRKLNVSTNFISG-PIPQDLSLCRSLEVLDLCTNRFHG 129
Query: 153 TIPQTLGNLSNL--LYLDLNNFLDQSNQIDLEWLSGLSSLVYF--NLGGA-DLSKAGAYW 207
IP L + L LYL N+L S + LS L LV + NL G S A
Sbjct: 130 VIPIQLTMIITLKKLYL-CENYLFGSIPRQIGNLSSLQELVIYSNNLTGVIPPSMAKLRQ 188
Query: 208 LEVF----NKLHSFVELHLPNCNLPSLPLSFPSLNFASLQVLDLSNNDFNSTTPHWLFNI 263
L + N + + C SL+VL L+ N + P L +
Sbjct: 189 LRIIRAGRNGFSGVIPSEISGCE--------------SLKVLGLAENLLEGSLPKQLEKL 234
Query: 264 TSLLCLDLGSNDLQGDIPDGFASLNSLQELDLSGNSFLGGQLSRNLGKLCNLRTMILSRN 323
+L L L N L G+IP +++ L+ L L N F G + R +GKL ++ + L N
Sbjct: 235 QNLTDLILWQNRLSGEIPPSVGNISRLEVLALHENYFTG-SIPREIGKLTKMKRLYLYTN 293
Query: 324 NISSEVSDFLDGLSECTNSILLEKLELRFNQFTGILPISLGSLKNLRHLVLWQNSFLGSI 383
++ E+ E N I +++ NQ TG +P G + NL+ L L++N LG I
Sbjct: 294 QLTGEIP------REIGNLIDAAEIDFSENQLTGFIPKEFGHILNLKLLHLFENILLGPI 347
Query: 384 PPSIGNLTLLKELYLASNQMNGQKISDSYQHLKNQTELRTLVLNK--ARISDTISDWFWQ 441
P +G LTLL++L L+ N++NG I Q L +L+ L N+ +I I ++
Sbjct: 348 PRELGELTLLEKLDLSINRLNG-TIPQELQFLPYLVDLQ-LFDNQLEGKIPPLIG-FYSN 404
Query: 442 LSLTLDELDVAYNELRGRVPNSL-GFNFPAKVDLSFNNFEG---RLLLWSFNVTKLYLRD 497
S+ LD++ N L G +P F + L N G R L ++TKL L D
Sbjct: 405 FSV----LDMSANSLSGPIPAHFCRFQTLILLSLGSNKLSGNIPRDLKTCKSLTKLMLGD 460
Query: 498 NSFSGLIPNDIG--QNLPFL------------TDLGNLKQLITLVISNNNLSGEIPLLFS 543
N +G +P ++ QNL L DLG LK L L ++NNN +GEIP
Sbjct: 461 NQLTGSLPIELFNLQNLTALELHQNWLSGNISADLGKLKNLERLRLANNNFTGEIPPEIG 520
Query: 544 NISFLYILDMSNNSLSGSTPESIGSLRTVKFLVLRNNYLSGKLPLSLKNCTFQE 597
N++ + ++S+N L+G P+ +GS T++ L L N SG + L + E
Sbjct: 521 NLTKIVGFNISSNQLTGHIPKELGSCVTIQRLDLSGNKFSGYIAQELGQLVYLE 574
|
Arabidopsis thaliana (taxid: 3702) EC: 2 EC: . EC: 7 EC: . EC: 1 EC: 1 EC: . EC: 1 |
| >sp|Q9FIZ3|GSO2_ARATH LRR receptor-like serine/threonine-protein kinase GSO2 OS=Arabidopsis thaliana GN=GSO2 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 167 bits (422), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 185/603 (30%), Positives = 270/603 (44%), Gaps = 108/603 (17%)
Query: 28 LGSG--CQEAERKALLQFKQS-LRDPSGQ--LSSW--VGEDCCSWSGVSCNNRTASVIKL 80
LGSG Q + + LL+ K S + +P + L W C+W+GV+C R +I L
Sbjct: 19 LGSGQPGQRDDLQTLLELKNSFITNPKEEDVLRDWNSGSPSYCNWTGVTCGGR--EIIGL 76
Query: 81 NLNNPFRDSFGSFEDDAGHELGGEISPSLLQLKDLEYLDLSMNNFTG------------- 127
NL +G L G ISPS+ + +L ++DLS N G
Sbjct: 77 NL--------------SGLGLTGSISPSIGRFNNLIHIDLSSNRLVGPIPTTLSNLSSSL 122
Query: 128 -----------FQVPEFIGSLKELRYLNLSGSFFSGTIPQTLGNLSNLLYLDLNNFLDQS 176
+P +GSL L+ L L + +GTIP+T GNL NL L
Sbjct: 123 ESLHLFSNLLSGDIPSQLGSLVNLKSLKLGDNELNGTIPETFGNLVNLQML--------- 173
Query: 177 NQIDLEWLSGLSSLVYFNLGGADLSKAGAYWLEVFNKLHSFVELHLPNCNLPSLPLSFPS 236
+L L G S+ F +L L L + L P+
Sbjct: 174 ------------ALASCRLTGLIPSR--------FGRLVQLQTLILQDNELEG-PIPAEI 212
Query: 237 LNFASLQVLDLSNNDFNSTTPHWLFNITSLLCLDLGSNDLQGDIPDGFASLNSLQELDLS 296
N SL + + N N + P L + +L L+LG N G+IP L S+Q L+L
Sbjct: 213 GNCTSLALFAAAFNRLNGSLPAELNRLKNLQTLNLGDNSFSGEIPSQLGDLVSIQYLNLI 272
Query: 297 GNSFLGGQLSRNLGKLCNLRTMILSRNNISSEVSDFLDGLSECTNSILLEKLELRFNQFT 356
GN L G + + L +L NL+T+ LS NN++ + + +++ LE L L N+ +
Sbjct: 273 GNQ-LQGLIPKRLTELANLQTLDLSSNNLTGVIHEEFWRMNQ------LEFLVLAKNRLS 325
Query: 357 GILPISLGSL-KNLRHLVLWQNSFLGSIPPSIGNLTLLKELYLASNQMNGQKISDSYQHL 415
G LP ++ S +L+ L L + G IP I N LK L L++N + GQ I DS L
Sbjct: 326 GSLPKTICSNNTSLKQLFLSETQLSGEIPAEISNCQSLKLLDLSNNTLTGQ-IPDSLFQL 384
Query: 416 KNQTELRTLVLNKARISDTISDWFWQLSLTLDELDVAYNELRGRVPNSLGFNFPAKVDLS 475
EL L LN + T+S L+ L E + +N L G+VP +GF K+++
Sbjct: 385 ---VELTNLYLNNNSLEGTLSSSISNLT-NLQEFTLYHNNLEGKVPKEIGF--LGKLEIM 438
Query: 476 F---NNFEGRLLLWSFNVTKLYLRD---NSFSGLIPNDIGQNLPFLTDLGNLKQLITLVI 529
+ N F G + + N T+L D N SG IP+ IG+ LK L L +
Sbjct: 439 YLYENRFSGEMPVEIGNCTRLQEIDWYGNRLSGEIPSSIGR----------LKDLTRLHL 488
Query: 530 SNNNLSGEIPLLFSNISFLYILDMSNNSLSGSTPESIGSLRTVKFLVLRNNYLSGKLPLS 589
N L G IP N + ++D+++N LSGS P S G L ++ ++ NN L G LP S
Sbjct: 489 RENELVGNIPASLGNCHQMTVIDLADNQLSGSIPSSFGFLTALELFMIYNNSLQGNLPDS 548
Query: 590 LKN 592
L N
Sbjct: 549 LIN 551
|
Together with GSO1, receptor-like serine/threonine-kinase required during the development of the epidermal surface in embryos and cotyledons. Involved in the nuclear division phase of megagametogenesis. Arabidopsis thaliana (taxid: 3702) EC: 2 EC: . EC: 7 EC: . EC: 1 EC: 1 EC: . EC: 1 |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 598 | ||||||
| 359484185 | 990 | PREDICTED: LRR receptor-like serine/thre | 0.941 | 0.568 | 0.528 | 1e-167 | |
| 359488583 | 958 | PREDICTED: LRR receptor-like serine/thre | 0.941 | 0.587 | 0.527 | 1e-164 | |
| 359496390 | 1113 | PREDICTED: LRR receptor-like serine/thre | 1.0 | 0.537 | 0.488 | 1e-156 | |
| 359496717 | 1014 | PREDICTED: brassinosteroid LRR receptor | 0.998 | 0.588 | 0.484 | 1e-151 | |
| 147822632 | 969 | hypothetical protein VITISV_026260 [Viti | 0.958 | 0.591 | 0.493 | 1e-150 | |
| 225451409 | 1007 | PREDICTED: leucine-rich repeat receptor | 1.0 | 0.593 | 0.478 | 1e-149 | |
| 147789266 | 925 | hypothetical protein VITISV_040339 [Viti | 0.871 | 0.563 | 0.516 | 1e-147 | |
| 359488639 | 1097 | PREDICTED: LRR receptor-like serine/thre | 0.998 | 0.544 | 0.471 | 1e-146 | |
| 359496699 | 1007 | PREDICTED: LRR receptor-like serine/thre | 1.0 | 0.593 | 0.475 | 1e-142 | |
| 359496388 | 1014 | PREDICTED: brassinosteroid LRR receptor | 0.998 | 0.588 | 0.477 | 1e-140 |
| >gi|359484185|ref|XP_002273824.2| PREDICTED: LRR receptor-like serine/threonine-protein kinase FLS2-like [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 594 bits (1531), Expect = e-167, Method: Compositional matrix adjust.
Identities = 347/656 (52%), Positives = 418/656 (63%), Gaps = 93/656 (14%)
Query: 32 CQEAERKALLQFKQSLRDPSGQLSSWVGEDCCSWSGVSCNNRTASVIKLNLNNPFRDSFG 91
C E E++ALL+FKQ L DPSG+LSSWVGEDCC W GVSCNNRT VIKL L NPF +S
Sbjct: 36 CLEVEKEALLKFKQGLTDPSGRLSSWVGEDCCKWRGVSCNNRTGRVIKLKLGNPFPNSLE 95
Query: 92 SFEDDAGHELGGEISPSLLQLKDLEYLDLSMNNFTGFQVPEFIGSLKELRYLNLSGSFFS 151
D ELGGEI+PSLL LK L YLDLSMNNF G ++P+FIGSL +LRYLNLSG+ F
Sbjct: 96 G--DGTASELGGEINPSLLSLKYLNYLDLSMNNFGGMEIPKFIGSLGKLRYLNLSGASFG 153
Query: 152 GTIPQTLGNLSNLLYLDLNNFLDQSNQIDLEWLSGLSSLVYFNLGGADLSKAGAYWLEVF 211
G IP + NLSNL YLDLN + + N+ LEWLSGLSSL Y NLGG DLS+A AYWL+
Sbjct: 154 GMIPPNIANLSNLRYLDLNTYSIEPNKNGLEWLSGLSSLKYLNLGGIDLSEAAAYWLQTI 213
Query: 212 NKLHSFVELHLPNCNLPSLPLSFPSLNFASLQVLDLSNNDFNSTTPHWLFNITSLLCLDL 271
N L S +ELH+PNC L + LS P LNF SL +LDLSNN+F+ST PHWLFN++SL+ LDL
Sbjct: 214 NTLPSLLELHMPNCQLSNFSLSLPFLNFTSLSILDLSNNEFDSTIPHWLFNLSSLVYLDL 273
Query: 272 GSNDLQGDIPDGFASLNSLQELDLSGNSFLGGQLSRNLGKLCNLRTMILSRNNISSEVSD 331
SN+LQG +PD F + SLQ LDLS NS + G+ R LG LC LRT+ILS N +S E+++
Sbjct: 274 NSNNLQGGLPDAFQNFTSLQLLDLSQNSNIEGEFPRTLGNLCCLRTLILSVNKLSGEITE 333
Query: 332 FLDGLSECTNSILLEKLELRFNQFTGILPISLGSLKNLRHLVLWQNSFLGSIPPSIGNLT 391
FLDGLS C+ S LE L+L FN+ TG LP SLG LKNLR+L L NSF GSIP SIG L+
Sbjct: 334 FLDGLSACSYST-LENLDLGFNELTGNLPDSLGHLKNLRYLQLRSNSFSGSIPESIGRLS 392
Query: 392 LLKELYLASNQMNGQKISDSY----------------------QHLKNQTELRTLVLNKA 429
L+ELYL+ NQM G I DS H N + L+ L + ++
Sbjct: 393 SLQELYLSQNQMGG-IIPDSLGQLSSLVVLELNGNSWEGVITEAHFANLSSLKQLSITRS 451
Query: 430 R-----ISDTISDWFWQLSLT--------------------------------------- 445
+ + SDW LT
Sbjct: 452 SPNVSLVFNVSSDWAPPFKLTYINLRSCQLGPKFPTWLRSQNELTTVVLNNARISGTIPD 511
Query: 446 --------LDELDVAYNELRGRVPNSLGFNFPAKVDLSFNNFEGRLLLWSFNVTKLYLRD 497
L ELD+AYN+L GRVPNSL F++ A VDLS N F+G L LWS NV+ LYLRD
Sbjct: 512 WLWKLNLQLRELDIAYNQLSGRVPNSLVFSYLANVDLSSNLFDGPLPLWSSNVSTLYLRD 571
Query: 498 NSFSGLIPNDIGQNLPFLTDL---------------GNLKQLITLVISNNNLSGEIPLLF 542
N FSG IP +I Q +P LTDL GNL+ LITLVISNNNLSGEIP +
Sbjct: 572 NLFSGPIPQNIAQVMPILTDLDISRNSLNGSIPWSMGNLQALITLVISNNNLSGEIPQFW 631
Query: 543 SNISFLYILDMSNNSLSGSTPESIGSLRTVKFLVLRNNYLSGKLPLSLKNCTFQES 598
+ + LYI+DMSNNSLSG+ P S+GSL ++FLVL +N LSG+LP L+NC+ ES
Sbjct: 632 NKMPSLYIIDMSNNSLSGTIPRSLGSLTALRFLVLSDNNLSGELPSQLQNCSALES 687
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|359488583|ref|XP_003633782.1| PREDICTED: LRR receptor-like serine/threonine-protein kinase FLS2-like [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 584 bits (1505), Expect = e-164, Method: Compositional matrix adjust.
Identities = 346/656 (52%), Positives = 417/656 (63%), Gaps = 93/656 (14%)
Query: 32 CQEAERKALLQFKQSLRDPSGQLSSWVGEDCCSWSGVSCNNRTASVIKLNLNNPFRDSFG 91
C E E++ LL+FKQ L DPSG+LSSWVGEDCC W GVSC NRT VIKL L NPF +S
Sbjct: 3 CLEVEKEGLLKFKQGLTDPSGRLSSWVGEDCCKWRGVSCYNRTGRVIKLKLGNPFPNSLE 62
Query: 92 SFEDDAGHELGGEISPSLLQLKDLEYLDLSMNNFTGFQVPEFIGSLKELRYLNLSGSFFS 151
D ELGGEI+PSLL LK L YLDLS NNF G ++P+FIGSL++LRYLNLSG+ F
Sbjct: 63 G--DRTASELGGEINPSLLSLKYLNYLDLSKNNFEGMEIPKFIGSLRKLRYLNLSGASFG 120
Query: 152 GTIPQTLGNLSNLLYLDLNNFLDQSNQIDLEWLSGLSSLVYFNLGGADLSKAGAYWLEVF 211
G IP + NLSNL YLDLN + + N+ LEWLSGLSSL Y NLGG DLSKA AYWL+
Sbjct: 121 GIIPPNIANLSNLRYLDLNTYSIEPNKNGLEWLSGLSSLKYLNLGGIDLSKAAAYWLQTV 180
Query: 212 NKLHSFVELHLPNCNLPSLPLSFPSLNFASLQVLDLSNNDFNSTTPHWLFNITSLLCLDL 271
N L S +ELH+PNC L +L LS P LNF SL +LDLSNN F+ST PHWLFN++SL+ LDL
Sbjct: 181 NTLPSLLELHMPNCQLSNLSLSLPFLNFTSLSILDLSNNGFDSTIPHWLFNLSSLVYLDL 240
Query: 272 GSNDLQGDIPDGFASLNSLQELDLSGNSFLGGQLSRNLGKLCNLRTMILSRNNISSEVSD 331
SN+LQG +PD F + SLQ LDLS NS + G+L R LG LC LRT+ILS N +S E+++
Sbjct: 241 NSNNLQGGLPDAFQNFTSLQLLDLSKNSNIEGELPRTLGNLCYLRTLILSVNKLSGEIAE 300
Query: 332 FLDGLSECTNSILLEKLELRFNQFTGILPISLGSLKNLRHLVLWQNSFLGSIPPSIGNLT 391
FLDGLS C+ S LE L+L FN+ TG LP SLG LKNLR+L LW NSF GSIP SIG+L+
Sbjct: 301 FLDGLSACSYST-LENLDLGFNKLTGNLPDSLGHLKNLRYLQLWSNSFRGSIPESIGSLS 359
Query: 392 LLKELYLASNQMNGQKISDSY----------------------QHLKNQTELRTLVLNKA 429
L+ELYL+ NQM G I DS H N + L+ L + K+
Sbjct: 360 SLQELYLSQNQMGG-IIPDSLGQLSSLVVLELNENSWEGVITEAHFANLSSLKQLSITKS 418
Query: 430 R-----ISDTISDWFWQLSLT--------------------------------------- 445
+ + SDW LT
Sbjct: 419 SPNVSLVFNISSDWAPPFKLTYINLRSCQLGPKFPTWLRTQNELTTIVLNNAGISGTIPD 478
Query: 446 -LDELDVAYNE-------LRGRVPNSLGFNFPAKVDLSFNNFEGRLLLWSFNVTKLYLRD 497
L +LD+ +E L GRVPNSL F++ A VDLS N F+G L LWS NV+ LYLR
Sbjct: 479 WLWKLDLQLSELDIAYNQLSGRVPNSLVFSYLANVDLSSNLFDGPLPLWSSNVSTLYLRG 538
Query: 498 NSFSGLIPNDIGQNLPFLTDL---------------GNLKQLITLVISNNNLSGEIPLLF 542
N FSG IP +IGQ +P LTDL G+L+ LITLVISNNNLSGEIP +
Sbjct: 539 NLFSGPIPQNIGQVMPILTDLDISWNSLNGSIPLSMGDLQALITLVISNNNLSGEIPQFW 598
Query: 543 SNISFLYILDMSNNSLSGSTPESIGSLRTVKFLVLRNNYLSGKLPLSLKNCTFQES 598
+ + LYI+DMSNNSLSG+ P S+GSL ++FLVL NN LSG+LP L+NC+ ES
Sbjct: 599 NKMPSLYIVDMSNNSLSGTIPRSLGSLTALRFLVLSNNNLSGELPSQLQNCSVLES 654
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|359496390|ref|XP_002268557.2| PREDICTED: LRR receptor-like serine/threonine-protein kinase GSO2-like [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 558 bits (1439), Expect = e-156, Method: Compositional matrix adjust.
Identities = 344/704 (48%), Positives = 428/704 (60%), Gaps = 106/704 (15%)
Query: 1 MGGNKSATSALLLLLLLSGILHPETIQLGS-------GCQEAERKALLQFKQSLRDPSGQ 53
M ++ LLL+ L S LH ET++LGS C E ERKAL+ FKQ L DPSG+
Sbjct: 105 MANINASIHFLLLIFLSSTFLHLETVKLGSCNGVLNVSCTEIERKALVDFKQGLTDPSGR 164
Query: 54 LSSWVGEDCCSWSGVSCNNRTASVIKLNLNNPFR-------DSFGSFED--DAGHELGGE 104
LSSWVG DCC W GV C+ R VIKL L N + ++ G+F D A H GGE
Sbjct: 165 LSSWVGLDCCRWRGVVCSQRAPQVIKLKLRNQYARSPDADGEATGAFGDYYGAAHAFGGE 224
Query: 105 ISPSLLQLKDLEYLDLSMNNFTGFQVPEFIGSLKELRYLNLSGSFFSGTIPQTLGNLSNL 164
IS SLL LK L YLDLSMN F G ++P+FIGS K LRYLNLSG+ F GTIP LGNLS+L
Sbjct: 225 ISHSLLDLKYLRYLDLSMNYFGGLKIPKFIGSFKRLRYLNLSGASFGGTIPPHLGNLSSL 284
Query: 165 LYLDLNNFLDQSNQIDLEWLSGLSSLVYFNLGGADLSKAGAYWLEVFNKLHSFVELHLPN 224
LYLDLN++ +S + DL WLSGLSSL + NLG D SK AYW + L S +EL LP
Sbjct: 285 LYLDLNSYSLESVENDLHWLSGLSSLRHLNLGNIDFSKTAAYWHRAVSSLSSLLELRLPG 344
Query: 225 CNLPSLP-LSFPSLNFASLQVLDLSNNDFNSTTPHWLFNITSLLCLDLGSNDLQGDIPDG 283
C L SLP LS P N SL +LDLSNN FNS+ PHWLFN +SL LDL SN+LQG +PDG
Sbjct: 345 CGLSSLPDLSLPFGNVTSLSMLDLSNNGFNSSIPHWLFNFSSLAYLDLNSNNLQGSVPDG 404
Query: 284 FASLNSLQELDLSGNSFLGGQLSRNLGKLCNLRTMILSRNNISSEVSDFLDGLSECTNSI 343
F L SL+ +DLS N F+GG L NLGKLCNLRT+ LS N+IS E++ F+DGLSEC N
Sbjct: 405 FGFLISLKYIDLSSNLFIGGHLPGNLGKLCNLRTLKLSFNSISGEITGFMDGLSECVNGS 464
Query: 344 LLEKLELRFN-QFTGILPISLGSLKNLRHLVLWQNSFLGSI------------------- 383
LE L+L FN + G LP +LG LKNL+ L LW NSF+GSI
Sbjct: 465 SLESLDLGFNDKLGGFLPDALGHLKNLKFLRLWSNSFVGSIPNSIGNLSSLKEFYISENQ 524
Query: 384 -----PPSIGNLTLLKELYLASNQMNG------------------QKISDSY-------- 412
P S+G L+ L + L+ N G +K+S +
Sbjct: 525 MNGIIPESVGQLSALVAVDLSENPWVGVITESHFSNLTNLTELAIKKVSPNVTLAFNVSS 584
Query: 413 -----------------------QHLKNQTELRTLVLNKARISDTISDWFWQLSLTLDEL 449
L+NQ +L+TLVLN ARISDTI DWFW+L L L+ L
Sbjct: 585 KWIPPFKLNYLELRTCQLGPKFPAWLRNQNQLKTLVLNNARISDTIPDWFWKLDLQLNLL 644
Query: 450 DVAYNELRGRVPNSLGFNFPAKVDLSFNNFEGRLLLWSFNVTKLYLRDNSFSGLIPNDIG 509
DVA N+L GRVPNSL F A VDLS N F G + +S N++ LYLRDN FSG IP D+G
Sbjct: 645 DVANNQLSGRVPNSLKFPKNAVVDLSSNRFHGPIPHFSSNLSSLYLRDNLFSGPIPLDVG 704
Query: 510 QNLPFLTD---------------LGNLKQLITLVISNNNLSGEIPLLFSNISFLYILDMS 554
+ +P+LT+ +G + L +LV+SNN+LSGEIPL++++ LYI+DM+
Sbjct: 705 KTMPWLTNFDVSWNSLNGTIPLSIGKITGLASLVLSNNHLSGEIPLIWNDKPDLYIVDMA 764
Query: 555 NNSLSGSTPESIGSLRTVKFLVLRNNYLSGKLPLSLKNCTFQES 598
NNSLSG P S+G+L ++ FL+L N LSG++P SL+NC +S
Sbjct: 765 NNSLSGEIPSSMGTLNSLMFLILSGNKLSGEIPSSLQNCKIMDS 808
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|359496717|ref|XP_003635312.1| PREDICTED: brassinosteroid LRR receptor kinase-like [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 540 bits (1391), Expect = e-151, Method: Compositional matrix adjust.
Identities = 341/704 (48%), Positives = 419/704 (59%), Gaps = 107/704 (15%)
Query: 1 MGGNKSATSALLLLLLLSGILHPETIQLGS-------GCQEAERKALLQFKQSLRDPSGQ 53
M ++ LLL+ L S L+ ET++LGS C E ERKAL+ FKQ L DPSG+
Sbjct: 1 MANINASIHFLLLIFLSSTFLYLETVKLGSCNGVLNVTCTEIERKALVDFKQGLTDPSGR 60
Query: 54 LSSWVGEDCCSWSGVSCNNRTASVIKLNLNNPFRDS-------FGSFEDD--AGHELGGE 104
LSSWVG DCC WSGV C+ R VIKL L N + S G+FEDD A H GGE
Sbjct: 61 LSSWVGLDCCRWSGVVCSQRVPRVIKLKLRNQYARSPDANDEDTGAFEDDYGAAHAFGGE 120
Query: 105 ISPSLLQLKDLEYLDLSMNNFTGFQVPEFIGSLKELRYLNLSGSFFSGTIPQTLGNLSNL 164
IS SLL LKDL YLDLSMNN G Q+P+FIGS K LRYLNLSG+ F GTIP LGNLS+L
Sbjct: 121 ISHSLLDLKDLRYLDLSMNNLEGLQIPKFIGSFKRLRYLNLSGASFGGTIPPHLGNLSSL 180
Query: 165 LYLDLNNFLDQSNQIDLEWLSGLSSLVYFNLGGADLSKAGAYWLEVFNKLHSFVELHLPN 224
LYLDLN++ +S + DL WLSGLSSL + NLG DLSKA AYW N L S +EL LP
Sbjct: 181 LYLDLNSYSLESVEDDLHWLSGLSSLRHLNLGNIDLSKAAAYWHRAVNSLSSLLELRLPR 240
Query: 225 CNLPSLP-LSFPSLNFASLQVLDLSNNDFNSTTPHWLFNITSLLCLDLGSNDLQGDIPDG 283
C L SLP L P N SL VLDLSNNDFNS+ PHWLFN +SL LDL SN+LQG +P+G
Sbjct: 241 CGLSSLPDLPLPFFNVTSLLVLDLSNNDFNSSIPHWLFNFSSLAYLDLNSNNLQGSVPEG 300
Query: 284 FASLNSLQELDLSGNSFLGGQLSRNLGKLCNLRTMILSRNNISSEVSDFLDGLSECTNSI 343
F L SL+ +D S N F+ G L R+LGKLCNLRT+ LS N+IS E+++F+DGLSEC NS
Sbjct: 301 FGYLISLKYIDFSSNLFI-GHLPRDLGKLCNLRTLKLSFNSISGEITEFMDGLSECVNSS 359
Query: 344 LLEKLELRFN-QFTGILPISLGSLKNLRHLVLWQNSFLGSIPPSIGNLTLLKELYLASNQ 402
LE L+L FN + G LP SLG LKNL+ L LW NSF+GSIP SIGNL+ L+ Y++ NQ
Sbjct: 360 SLESLDLGFNYKLGGFLPNSLGHLKNLKSLHLWSNSFVGSIPNSIGNLSSLQGFYISENQ 419
Query: 403 MNGQKISDSYQ---------------------HLKNQTELRTLVLNKARISDTI-----S 436
MNG Q H N T L L + K+ ++ T+ S
Sbjct: 420 MNGIIPESVGQLSALVALDLSENPWVGVVTESHFSNLTSLTELAIKKSFLNITLVFNVNS 479
Query: 437 DWFWQLSLTLDELDVA------------YNELR--------------------------- 457
W L EL N+L+
Sbjct: 480 KWIPPFKLNYLELQACQLGPKFPAWLRTQNQLKTIVLNNARISDTIPDWFWKLDLQLELL 539
Query: 458 --------GRVPNSLGFNFPAKVDLSFNNFEGRLLLWSFNVTKLYLRDNSFSGLIPNDIG 509
GRVPNSL F A VDL N F G +S N++ LYLRDN FSG IP D+G
Sbjct: 540 DVANNQLSGRVPNSLKFPKNAVVDLGSNRFHGPFPHFSSNLSSLYLRDNLFSGPIPRDVG 599
Query: 510 QNLPFLTD---------------LGNLKQLITLVISNNNLSGEIPLLFSNISFLYILDMS 554
+ +P+LT+ LG + L +LV+SNN+LSGEIPL++++ LYI+DM+
Sbjct: 600 KTMPWLTNFDVSWNSLNGTIPLSLGKITGLTSLVLSNNHLSGEIPLIWNDKPDLYIVDMA 659
Query: 555 NNSLSGSTPESIGSLRTVKFLVLRNNYLSGKLPLSLKNCTFQES 598
NNSLSG P S+G+L ++ FL+L N LSG++P SL+NC +S
Sbjct: 660 NNSLSGEIPSSMGTLNSLMFLILSGNKLSGEIPSSLQNCKDMDS 703
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|147822632|emb|CAN75075.1| hypothetical protein VITISV_026260 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 538 bits (1387), Expect = e-150, Method: Compositional matrix adjust.
Identities = 322/653 (49%), Positives = 411/653 (62%), Gaps = 80/653 (12%)
Query: 1 MGGNKSATSALLLLLLLSGILHPETIQLGS-------GCQEAERKALLQFKQSLRDPSGQ 53
M N L L++ SG L +TI++GS GC + E+ ALL+FKQ L D S +
Sbjct: 1 MANNNVFIQLLFLIITSSGFLFHDTIKVGSCQGDHQRGCVDTEKVALLKFKQGLTDTSDR 60
Query: 54 LSSWVGEDCCSWSGVSCNNRTASVIKLNLNNPFRDSFGSFEDDAGHELGGEISPSLLQLK 113
LSSWVGEDCC W GV CNNR+ VIKL L + D+ D ELGG+ISP+LL+LK
Sbjct: 61 LSSWVGEDCCKWRGVVCNNRSRHVIKLTLR--YLDA-----DGTEGELGGKISPALLELK 113
Query: 114 DLEYLDLSMNNFTGFQVPEFIGSLKELRYLNLSGSFFSGTIPQTLGNLSNLLYLDLNNFL 173
L YLDLSMNNF G +P+FIGSL++LRYLNLSG+ F G IP LGNLS+L YLDL +
Sbjct: 114 YLNYLDLSMNNFGGTPIPKFIGSLEKLRYLNLSGASFGGPIPPQLGNLSSLHYLDLKEYF 173
Query: 174 DQSNQIDLEWLSGLSSLVYFNLGGADLSKAGAYWLEVFNKLHSFVELHLPNCNLPSLPLS 233
D+SNQ DL W+SGL+SL + NLGG DLS+A AYWL+ +KL S ELHLP C L LP S
Sbjct: 174 DESNQNDLHWISGLTSLRHLNLGGVDLSQAAAYWLQAVSKLPSLSELHLPACALADLPPS 233
Query: 234 FPSLN-FASLQVLDLSNNDFNSTTPHWLFNITSLLCLDLGSNDLQGDIPDGFASLNSLQE 292
P N SL ++DLSNN FNST PHWLF + +L+ LDL SN+L+G I D FA+ S++
Sbjct: 234 LPFSNLITSLSIIDLSNNGFNSTIPHWLFQMRNLVYLDLSSNNLRGSILDAFANGTSIER 293
Query: 293 LDLSGNSFLGGQLSRNLGKLCNLRTMILSRNNISSEVSDFLDGLSECTNSILLEKLELRF 352
L RN+G LCNL+T+ILS+N+++ E+++ +D LS C NS LE L+L F
Sbjct: 294 L-------------RNMGSLCNLKTLILSQNDLNGEITELIDVLSGC-NSSWLETLDLGF 339
Query: 353 NQFTGILPISLGSLKNLRHLVLWQNSFLGSIPPSIGNLT-LLKELYLA--------SNQM 403
N G LP SLG L NL+ L LW NSFL +I S LT ++ E + + SN
Sbjct: 340 NDLGGFLPNSLGKLHNLKSLWLWDNSFLVAIEJSENPLTGVVTEAHFSNLXSLXEFSNYR 399
Query: 404 NGQKISDSY---------------------------QHLKNQTELRTLVLNKARISDTIS 436
++S + L+NQTEL +VLN A IS TI
Sbjct: 400 VTPRVSLVFNISPEWIPPFKLSLLRIRSCQMGPKFPAWLRNQTELTDVVLNNAGISHTIP 459
Query: 437 DWFWQLSLTLDELDVAYNELRGRVPNSLGFNFPAKVDLSFNNFEGRLLLWSFNVTKLYLR 496
+WFW+L L LDELD+ N L GRVPNS+ F + VDLS NNF+G L LWS NV KLYL
Sbjct: 460 EWFWKLDLRLDELDIGSNNLGGRVPNSMKFLPGSTVDLSENNFQGPLPLWSSNVMKLYLY 519
Query: 497 DNSFSGLIPNDIGQNLPFLTDL---------------GNLKQLITLVISNNNLSGEIPLL 541
DN FSG IP + G+ +P LTDL G L L+TLVISNN+LSG IP
Sbjct: 520 DNFFSGPIPLEFGERMPMLTDLDLSSNALNGTIPLSFGKLNNLLTLVISNNHLSGGIPEF 579
Query: 542 FSNISFLYILDMSNNSLSGSTPESIGSLRTVKFLVLRNNYLSGKLPLSLKNCT 594
++ + +LY +DM+NN+LSG P S+GSLR ++FL++ NN+LSG+LP +L+NCT
Sbjct: 580 WNGLPYLYAIDMNNNNLSGELPSSMGSLRFLRFLMISNNHLSGQLPSALQNCT 632
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|225451409|ref|XP_002273126.1| PREDICTED: leucine-rich repeat receptor protein kinase EXS-like [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 536 bits (1382), Expect = e-149, Method: Compositional matrix adjust.
Identities = 337/704 (47%), Positives = 419/704 (59%), Gaps = 106/704 (15%)
Query: 1 MGGNKSATSALLLLLLLSGILHPETIQLGS-------GCQEAERKALLQFKQSLRDPSGQ 53
M ++ LLL+ L S L+ ET++LGS C E ERKAL+ FKQ L DPSG+
Sbjct: 1 MANINASIHFLLLIFLSSTFLYLETVKLGSCNGVLNVSCTEIERKALVDFKQGLTDPSGR 60
Query: 54 LSSWVGEDCCSWSGVSCNNRTASVIKLNLNNPFR-------DSFGSFEDD--AGHELGGE 104
LSSWVG DCC WSGV C+ R VIKL L N + + G+FEDD A H GGE
Sbjct: 61 LSSWVGLDCCRWSGVVCSQRVPRVIKLKLRNQYARTPDANDEDTGAFEDDYGAAHAFGGE 120
Query: 105 ISPSLLQLKDLEYLDLSMNNFTGFQVPEFIGSLKELRYLNLSGSFFSGTIPQTLGNLSNL 164
IS SLL LKDL YLDLSMNNF G Q+P+FIGS K LRYLNLSG+ F GTIP LGNLS+L
Sbjct: 121 ISHSLLDLKDLRYLDLSMNNFEGLQIPKFIGSFKRLRYLNLSGASFGGTIPPHLGNLSSL 180
Query: 165 LYLDLNNFLDQSNQIDLEWLSGLSSLVYFNLGGADLSKAGAYWLEVFNKLHSFVELHLPN 224
LYLDLN++ +S + DL WLSGLSSL + NLG DLSKA AYW N L S +EL LP
Sbjct: 181 LYLDLNSYSLESVEDDLHWLSGLSSLRHLNLGNIDLSKAAAYWHRAVNSLSSLLELRLPR 240
Query: 225 CNLPSLP-LSFPSLNFASLQVLDLSNNDFNSTTPHWLFNITSLLCLDLGSNDLQGDIPDG 283
C L SLP L P N SL VLDLSNNDFNS+ PHWLFN +SL LDL SN+LQG +P+G
Sbjct: 241 CGLSSLPDLPLPFFNVTSLLVLDLSNNDFNSSIPHWLFNFSSLAYLDLNSNNLQGSVPEG 300
Query: 284 FASLNSLQELDLSGNSFLGGQLSRNLGKLCNLRTMILSRNNISSEVSDFLDGLSECTNSI 343
F L SL+ +D S N F+GG L R+LGKLCNLRT+ LS N+IS E+++F+DGLSEC NS
Sbjct: 301 FGYLISLKYIDFSSNLFIGGHLPRDLGKLCNLRTLKLSFNSISGEITEFMDGLSECVNSS 360
Query: 344 LLEKLELRFN-QFTGILPISLGSLKNLRHLVLWQNSFLGSIPPSIGNLTLLKELYLASNQ 402
LE L+L FN + G LP SLG LKNL+ L LW NSF+GSIP SIGNL+ L+ Y++ NQ
Sbjct: 361 SLESLDLGFNYKLGGFLPNSLGHLKNLKSLHLWSNSFVGSIPNSIGNLSSLQGFYISENQ 420
Query: 403 MNGQKISDSYQ---------------------HLKNQTELRTLVLNKARISDTI-----S 436
MNG Q H N T L L + K+ + T+ S
Sbjct: 421 MNGIIPESVGQLSALVALDLSENPWVGVVTESHFSNLTSLTELAIKKSSPNITLVFNVNS 480
Query: 437 DWFWQLSLTLDELDVA------------YNELR------GRVPNSL-------------- 464
W L EL N+L+ R+ +++
Sbjct: 481 KWIPPFKLNYLELRTCQLGPKFPAWLRTQNQLKTIVLNNARISDTIPDWFWKLDLQLELL 540
Query: 465 -------------GFNFP--AKVDLSFNNFEGRLLLWSFNVTKLYLRDNSFSGLIPNDIG 509
FP A VDLS N F G +S N++ LYLRDN FSG IP D+G
Sbjct: 541 DVANNQLSGRVPNSLKFPENAVVDLSSNRFHGPFPHFSSNLSSLYLRDNLFSGPIPRDVG 600
Query: 510 QNLPFLTD---------------LGNLKQLITLVISNNNLSGEIPLLFSNISFLYILDMS 554
+ +P+LT+ +G + L +LV+SNN+LSGEIPL++++ LYI+DM
Sbjct: 601 KTMPWLTNFDVSWNSLNGTIPLSIGKITGLASLVLSNNHLSGEIPLIWNDKPDLYIVDME 660
Query: 555 NNSLSGSTPESIGSLRTVKFLVLRNNYLSGKLPLSLKNCTFQES 598
NNSLSG P S+G+L ++ FL+L N LSG++P SL+NC +S
Sbjct: 661 NNSLSGEIPSSMGTLNSLMFLILSGNKLSGEIPSSLQNCKDMDS 704
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|147789266|emb|CAN71149.1| hypothetical protein VITISV_040339 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 528 bits (1359), Expect = e-147, Method: Compositional matrix adjust.
Identities = 316/612 (51%), Positives = 381/612 (62%), Gaps = 91/612 (14%)
Query: 75 ASVIKLNLNNPFRDSFGSFEDDAGHELGGEISPSLLQLKDLEYLDLSMNNFTGFQVPEFI 134
S IKL L NPF +S D ELGGEI+PSLL LK L YLDLSMNNF G ++P+FI
Sbjct: 14 TSSIKLKLGNPFPNSLEG--DGTASELGGEINPSLLSLKYLNYLDLSMNNFGGMEIPKFI 71
Query: 135 GSLKELRYLNLSGSFFSGTIPQTLGNLSNLLYLDLNNFLDQSNQIDLEWLSGLSSLVYFN 194
GSL +LRYLNLSG+ F G IP + NLSNL YLDLN + + N+ LEWLSGLSSL Y N
Sbjct: 72 GSLGKLRYLNLSGASFGGMIPPNIANLSNLRYLDLNTYSIEPNKNGLEWLSGLSSLKYLN 131
Query: 195 LGGADLSKAGAYWLEVFNKLHSFVELHLPNCNLPSLPLSFPSLNFASLQVLDLSNNDFNS 254
LGG DLS+A AYWL+ N L S +ELH+PNC L + LS P LNF SL +LDLSNN+F+S
Sbjct: 132 LGGIDLSEAAAYWLQTINTLPSLLELHMPNCQLSNFSLSLPFLNFTSLSILDLSNNEFDS 191
Query: 255 TTPHWLFNITSLLCLDLGSNDLQGDIPDGFASLNSLQELDLSGNSFLGGQLSRNLGKLCN 314
T PHWLFN+ SL+ LDL SN+LQG +PD F + SLQ LDLS NS + G+ R LG LC
Sbjct: 192 TIPHWLFNLXSLVYLDLNSNNLQGGLPDAFQNFTSLQLLDLSQNSNIEGEFPRTLGNLCX 251
Query: 315 LRTMILSRNNISSEVSDFLDGLSECTNSILLEKLELRFNQFTGILPISLGSLKNLRHLVL 374
LRT+ILS N +S E+++FLDGLS C+ S L E L+L FN+ TG LP SLG LKNLR+L L
Sbjct: 252 LRTLILSVNKLSGEITEFLDGLSACSYSTL-ENLDLGFNELTGNLPDSLGHLKNLRYLQL 310
Query: 375 WQNSFLGS------------------------IPPSIGNLTLLKELYLASNQMNGQKISD 410
NSF GS IP S+G L+ L L L N G
Sbjct: 311 RSNSFSGSIPESIGXLSSLQELYLSQNQMGGIIPDSLGQLSSLVVLELNGNSWEGVITEA 370
Query: 411 SYQHL-------------------------------------------------KNQTEL 421
+ +L ++Q EL
Sbjct: 371 HFANLSSLXQLSITRSSPNVSLVFNVSSDWAPPFKLTYINLRSCQLGPKFPTWLRSQNEL 430
Query: 422 RTLVLNKARISDTISDWFWQLSLTLDELDVAYNELRGRVPNSLGFNFPAKVDLSFNNFEG 481
T+VLN ARIS TI DW W+L L L ELD+AYN+L GRVPNSL F++ A VDLS N F+G
Sbjct: 431 TTVVLNNARISGTIPDWLWKLDLQLRELDIAYNQLSGRVPNSLVFSYLANVDLSSNLFDG 490
Query: 482 RLLLWSFNVTKLYLRDNSFSGLIPNDIGQNLPFLTDL---------------GNLKQLIT 526
L LWS NV+ LYLRDN FSG IP +I Q +P LTDL GNL+ LIT
Sbjct: 491 PLPLWSSNVSTLYLRDNLFSGPIPQNIAQVMPILTDLDISRNSLNGSIPLSMGNLQALIT 550
Query: 527 LVISNNNLSGEIPLLFSNISFLYILDMSNNSLSGSTPESIGSLRTVKFLVLRNNYLSGKL 586
LVISNNNLSGEIP ++ + LYI+DMSNNSLSG+ P+S+GSL ++FLVL +N LSG+L
Sbjct: 551 LVISNNNLSGEIPQFWNKMPSLYIVDMSNNSLSGTIPKSLGSLTALRFLVLSDNNLSGEL 610
Query: 587 PLSLKNCTFQES 598
P L+NC+ ES
Sbjct: 611 PSQLQNCSALES 622
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|359488639|ref|XP_003633795.1| PREDICTED: LRR receptor-like serine/threonine-protein kinase FLS2-like [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 526 bits (1355), Expect = e-146, Method: Compositional matrix adjust.
Identities = 332/704 (47%), Positives = 413/704 (58%), Gaps = 107/704 (15%)
Query: 1 MGGNKSATSALLLLLLLSGILHPETIQLGS-------GCQEAERKALLQFKQSLRDPSGQ 53
M ++ LLL+ L S LH ET++LGS C E ERK L+QFKQ L DPSG+
Sbjct: 90 MANINASIHFLLLIFLSSTFLHLETVKLGSCNGVLNVSCTEIERKTLVQFKQGLTDPSGR 149
Query: 54 LSSWVGEDCCSWSGVSCNNRTASVIKLNLNNPFRDS---------FGSFEDDAGHELGGE 104
LSSWVG DCC W GV C+ R VIKL L N + S FG + A H GGE
Sbjct: 150 LSSWVGLDCCRWRGVVCSQRAPQVIKLQLRNRYARSPDDGEATCAFGDYYG-AAHAFGGE 208
Query: 105 ISPSLLQLKDLEYLDLSMNNFTGFQVPEFIGSLKELRYLNLSGSFFSGTIPQTLGNLSNL 164
IS SLL LK L YLDLSMN F G ++P+FIGS K LRYLNLSG+ F GTIP LGNLS+L
Sbjct: 209 ISHSLLDLKYLRYLDLSMNYFGGLKIPKFIGSFKRLRYLNLSGASFGGTIPPHLGNLSSL 268
Query: 165 LYLDLNNFLDQSNQIDLEWLSGLSSLVYFNLGGADLSKAGAYWLEVFNKLHSFVELHLPN 224
LYLDLN++ +S + DL WLSGLSSL + +LG D SKA AYW + L S +EL LP
Sbjct: 269 LYLDLNSYSLESVENDLHWLSGLSSLRHLDLGNIDFSKAAAYWHRAVSSLSSLLELRLPG 328
Query: 225 CNLPSLP-LSFPSLNFASLQVLDLSNNDFNSTTPHWLFNITSLLCLDLGSNDLQGDIPDG 283
C L SLP L P N SL +LDLSNN F+S+ PHWLFN +SL LDL SN+LQG +PDG
Sbjct: 329 CGLSSLPDLPLPFGNVTSLSMLDLSNNGFSSSIPHWLFNFSSLAYLDLNSNNLQGSVPDG 388
Query: 284 FASLNSLQELDLSGNSFLGGQLSRNLGKLCNLRTMILSRNNISSEVSDFLDGLSECTNSI 343
F L SL+ +DLS N F+GG L NLGKLCNLRT+ LS N+IS E++ F+DGLSEC N
Sbjct: 389 FGFLISLKYIDLSSNLFIGGHLPGNLGKLCNLRTLKLSFNSISGEITGFMDGLSECVNGS 448
Query: 344 LLEKLELRFNQ-FTGILPISLGSLKNLRHLVLWQNSFLGSIPPSIGNLTLLKELYLASNQ 402
LE L+L FN G LP +LG LKNL+ L LW NSF+GSIP SIGNL+ LKE Y++ NQ
Sbjct: 449 SLESLDLGFNDNLGGFLPDALGHLKNLKSLRLWSNSFVGSIPNSIGNLSSLKEFYISENQ 508
Query: 403 MNG--------------QKISD-------SYQHLKNQTELRTLVLNKARISDTI-----S 436
MNG +S+ + H N T L L + K + T+ S
Sbjct: 509 MNGIIPESVGQLSALVAVDVSENPWVGVITESHFSNLTNLTELAIKKVSPNVTLAFNVSS 568
Query: 437 DWFWQLSLTLDELDVA------------YNELR--------------------------- 457
W L EL + N+L+
Sbjct: 569 KWIPPFKLNYLELRICQLGPKFPAWLRNQNQLKTLVLNNARISDTIPDWFWKLDLQVDLL 628
Query: 458 --------GRVPNSLGFNFPAKVDLSFNNFEGRLLLWSFNVTKLYLRDNSFSGLIPNDIG 509
GRVPNSL F A VDLS N F G +S ++ LYLRDNSFSG +P D+G
Sbjct: 629 DFANNQLSGRVPNSLKFQEQAIVDLSSNRFHGPFPHFSSKLSSLYLRDNSFSGPMPRDVG 688
Query: 510 QNLPFLTD---------------LGNLKQLITLVISNNNLSGEIPLLFSNISFLYILDMS 554
+ +P+L + +G + L +LV+SNNNLSGEIPL++++ LYI+DM+
Sbjct: 689 KTMPWLINFDVSWNSLNGTIPLSIGKITGLASLVLSNNNLSGEIPLIWNDKPDLYIVDMA 748
Query: 555 NNSLSGSTPESIGSLRTVKFLVLRNNYLSGKLPLSLKNCTFQES 598
NNSLSG P S+G+L ++ FL+L N LSG++P SL+NC +S
Sbjct: 749 NNSLSGEIPSSMGTLNSLMFLILSGNKLSGEIPSSLQNCKIMDS 792
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|359496699|ref|XP_003635304.1| PREDICTED: LRR receptor-like serine/threonine-protein kinase GSO2-like [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 513 bits (1320), Expect = e-142, Method: Compositional matrix adjust.
Identities = 333/700 (47%), Positives = 412/700 (58%), Gaps = 102/700 (14%)
Query: 1 MGGNKSATSALLLLLLLSGILHPETIQLGS-------GCQEAERKALLQFKQSLRDPSGQ 53
M ++ LLL+ L S LH ET++LGS C E ERKAL+ FKQ L DPSG+
Sbjct: 1 MADINASIHFLLLIFLSSTFLHLETVKLGSCNVVLNASCTEIERKALVNFKQGLTDPSGR 60
Query: 54 LSSWVGEDCCSWSGVSCNNRTASVIKLNLNN-----PFRDSFGSFEDDAGHELGGEISPS 108
LSSWVG DCC WSGV CN+R VIKL L N P D+ + + A H GGEIS S
Sbjct: 61 LSSWVGLDCCRWSGVVCNSRPPRVIKLKLRNQYARSPDPDNEATDDYGAAHAFGGEISHS 120
Query: 109 LLQLKDLEYLDLSMNNFTGFQVPEFIGSLKELRYLNLSGSFFSGTIPQTLGNLSNLLYLD 168
LL LKDL YLDLSMNNF G ++P+FIGS K LRYLNLSG+ F GTIP LGNLS+LLYLD
Sbjct: 121 LLDLKDLRYLDLSMNNFGGLEIPKFIGSFKRLRYLNLSGASFGGTIPPHLGNLSSLLYLD 180
Query: 169 LNNFLDQSNQIDLEWLSGLSSLVYFNLGGADLSKAGAYWLEVFNKLHSFVELHLPNCNLP 228
LN++ +S + DL WLSGLSSL + NLG D SKA AYW N L S +EL LP C L
Sbjct: 181 LNSYSLESVENDLHWLSGLSSLRHLNLGNIDFSKAAAYWHRAVNSLSSLLELRLPGCGLS 240
Query: 229 SLP-LSFPSLNFASLQVLDLSNNDFNSTTPHWLFNITSLLCLDLGSNDLQGDIPDGFASL 287
SLP LS P N SL VLDLSNN FNS+ PHWLFN +SL LDL SN LQG +PD F L
Sbjct: 241 SLPGLSLPFGNVTSLSVLDLSNNGFNSSIPHWLFNFSSLAYLDLNSNSLQGSVPDRFGFL 300
Query: 288 NSLQELDLSGNSFLGGQLSRNLGKLCNLRTMILSRNNISSEVSDFLDGLSECTNSILLEK 347
SL+ +DLS N +GG L RNLGKLCNLRT+ LS N IS E+++ +DGLSEC NS LE
Sbjct: 301 ISLEYIDLSFNILIGGHLPRNLGKLCNLRTLKLSFNIISGEITELIDGLSECVNSSSLES 360
Query: 348 LELRFN-QFTGILPISLGSLKNLRHLVLWQNSFLGSIPPSIGNLTLLKELYLASNQMNG- 405
L+ FN + G LP SLG LKNL+ L LW NSF+GSIP +IGNL+ L+E Y++ NQMNG
Sbjct: 361 LDFGFNYKLDGFLPNSLGHLKNLKSLHLWGNSFVGSIPNTIGNLSSLQEFYISENQMNGI 420
Query: 406 -------------QKISD-------SYQHLKNQTELRTLVLNKARISDTI-----SDWFW 440
+S+ + H N T L L + K+ + T+ S W
Sbjct: 421 IPESVGQLSALVAADLSENPWVCVVTESHFSNLTSLIELSIKKSSPNITLVFNVNSKWIP 480
Query: 441 QLSLTLDELDVAY------------NELR------------------------------- 457
L+ EL + N+L+
Sbjct: 481 PFKLSYLELQACHLGPKFPAWLRTQNQLKTIVLNNARISDSIPDWFWKLDLQLHLLDFSN 540
Query: 458 ----GRVPNSLGFNFPAKVDLSFNNFEGRLLLWSFNVTKLYLRDNSFSGLIPNDIGQNLP 513
G+VPNS F A VDLS N F G +S N++ LYL DNSFSG IP D G+ +P
Sbjct: 541 NQLSGKVPNSWKFTENAVVDLSSNRFHGPFPHFSSNLSSLYLSDNSFSGPIPRDFGKTMP 600
Query: 514 FLTD---------------LGNLKQLITLVISNNNLSGEIPLLFSNISFLYILDMSNNSL 558
L++ + + L LVISNN LSGEIPL++++ LY +DM++NSL
Sbjct: 601 RLSNFDVSWNSLNGTIPLSMAKITGLTNLVISNNQLSGEIPLIWNDKPDLYEVDMAHNSL 660
Query: 559 SGSTPESIGSLRTVKFLVLRNNYLSGKLPLSLKNCTFQES 598
SG P S+G+L ++ FL+L N LSG++P SL+NC +S
Sbjct: 661 SGEIPSSMGTLNSLMFLILSGNKLSGEIPFSLQNCKDMDS 700
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|359496388|ref|XP_003635224.1| PREDICTED: brassinosteroid LRR receptor kinase-like [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 505 bits (1301), Expect = e-140, Method: Compositional matrix adjust.
Identities = 336/704 (47%), Positives = 417/704 (59%), Gaps = 107/704 (15%)
Query: 1 MGGNKSATSALLLLLLLSGILHPETIQLGS-------GCQEAERKALLQFKQSLRDPSGQ 53
M ++ LLL+ L S L+ ET++LGS C E ERKAL+ FKQ L DPSG+
Sbjct: 1 MANINASIHFLLLIFLSSTFLYLETVKLGSCNGVLNVTCTEIERKALVDFKQGLTDPSGR 60
Query: 54 LSSWVGEDCCSWSGVSCNNRTASVIKLNLNNPFRDS-------FGSFEDD--AGHELGGE 104
LSSWVG DCC WSGV C+ R VIKL L N + S G+FEDD A H GGE
Sbjct: 61 LSSWVGLDCCRWSGVVCSQRVPRVIKLKLRNQYARSPDANDEDTGAFEDDYGAAHAFGGE 120
Query: 105 ISPSLLQLKDLEYLDLSMNNFTGFQVPEFIGSLKELRYLNLSGSFFSGTIPQTLGNLSNL 164
IS SLL LKDL YLDLSMNNF G Q+P+FIGS K LRYLNLSG+ F GTIP LG LS+L
Sbjct: 121 ISHSLLDLKDLRYLDLSMNNFEGLQIPKFIGSFKRLRYLNLSGASFGGTIPPHLGYLSSL 180
Query: 165 LYLDLNNFLDQSNQIDLEWLSGLSSLVYFNLGGADLSKAGAYWLEVFNKLHSFVELHLPN 224
LYLDLN++ +S + DL WLSGLSSL + NLG DLSKA AYW N L S +EL LP
Sbjct: 181 LYLDLNSYSLESVEDDLHWLSGLSSLRHLNLGNIDLSKAAAYWHRAVNSLSSLLELRLPR 240
Query: 225 CNLPSLP-LSFPSLNFASLQVLDLSNNDFNSTTPHWLFNITSLLCLDLGSNDLQGDIPDG 283
C L SLP L P N SL VLDLSNNDFNS+ PHWLFN +SL LDL SN+LQG +P+G
Sbjct: 241 CGLSSLPDLPLPFFNVTSLLVLDLSNNDFNSSIPHWLFNFSSLAYLDLNSNNLQGSVPEG 300
Query: 284 FASLNSLQELDLSGNSFLGGQLSRNLGKLCNLRTMILSRNNISSEVSDFLDGLSECTNSI 343
F L SL+ +D S N F+ G L R+LGKLCNLRT+ LS N+IS E+++F+DGLSEC NS
Sbjct: 301 FGYLISLKYIDFSSNLFI-GHLPRDLGKLCNLRTLKLSFNSISGEITEFMDGLSECVNSS 359
Query: 344 LLEKLELRFN-QFTGILPISLGSLKNLRHLVLWQNSFLGSIPPSIGNLTLLKELYLASNQ 402
LE L+L FN + G LP SLG LKNL+ L LW NSF+GSIP SIGNL+ L+ Y++ NQ
Sbjct: 360 SLESLDLGFNYKLGGFLPNSLGHLKNLKSLHLWSNSFVGSIPNSIGNLSSLQGFYISENQ 419
Query: 403 MNGQKISDSYQ---------------------HLKNQTELRTLVLNKARISDTI-----S 436
MNG Q H N T L L + K+ + T+ S
Sbjct: 420 MNGIIPESVGQLSALVALDLSENPWVGVVTESHFSNLTSLTELAIKKSSPNITLVFNVNS 479
Query: 437 DWFWQLSLTLDELDVA------------YNELR------GRVPNSL-------------- 464
W L EL N+L+ R+ +++
Sbjct: 480 KWIPPFKLNYLELQACQLGPKFPAWLRTQNQLKTIVLNNARISDTIPDWFWKLDLQLELL 539
Query: 465 -------------GFNFP--AKVDLSFNNFEGRLLLWSFNVTKLYLRDNSFSGLIPNDIG 509
FP A VDL N F G +S N++ LYLRDN FSG IP D+G
Sbjct: 540 DVANNQLSGRVPNSLKFPKNAVVDLGSNRFHGPFPHFSSNLSSLYLRDNLFSGPIPRDVG 599
Query: 510 QNLPFLTD---------------LGNLKQLITLVISNNNLSGEIPLLFSNISFLYILDMS 554
+ +P+LT+ LG + L +LV+SNN+LSGEIPL++++ LYI+DM+
Sbjct: 600 KTMPWLTNFDVSWNSLNGTIPLSLGKITGLTSLVLSNNHLSGEIPLIWNDKPDLYIVDMA 659
Query: 555 NNSLSGSTPESIGSLRTVKFLVLRNNYLSGKLPLSLKNCTFQES 598
NNSLSG P S+G+L ++ FL+L N LSG++P SL+NC +S
Sbjct: 660 NNSLSGEIPSSMGTLNSLMFLILSGNKLSGEIPSSLQNCKDMDS 703
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 598 | ||||||
| TAIR|locus:2044767 | 905 | AT2G34930 "AT2G34930" [Arabido | 0.894 | 0.591 | 0.347 | 4.9e-69 | |
| UNIPROTKB|Q40640 | 1025 | Xa21 "Receptor kinase-like pro | 0.918 | 0.535 | 0.301 | 4.3e-42 | |
| TAIR|locus:2043540 | 960 | AT2G25790 [Arabidopsis thalian | 0.550 | 0.342 | 0.336 | 6.2e-42 | |
| TAIR|locus:2032553 | 996 | HSL1 "HAESA-like 1" [Arabidops | 0.536 | 0.322 | 0.322 | 9.3e-42 | |
| TAIR|locus:2825389 | 784 | RLP11 "AT1G71390" [Arabidopsis | 0.561 | 0.428 | 0.300 | 1.6e-41 | |
| TAIR|locus:2182870 | 1192 | EMS1 "EXCESS MICROSPOROCYTES1" | 0.555 | 0.278 | 0.326 | 7.9e-41 | |
| TAIR|locus:2149922 | 1031 | EFR "EF-TU receptor" [Arabidop | 0.571 | 0.331 | 0.304 | 5.3e-40 | |
| TAIR|locus:2005540 | 999 | HAE "HAESA" [Arabidopsis thali | 0.556 | 0.333 | 0.331 | 1.4e-39 | |
| TAIR|locus:2170483 | 1173 | FLS2 "FLAGELLIN-SENSITIVE 2" [ | 0.543 | 0.277 | 0.322 | 9.2e-39 | |
| TAIR|locus:2160791 | 1102 | AT5G63930 [Arabidopsis thalian | 0.891 | 0.483 | 0.291 | 1.8e-38 |
| TAIR|locus:2044767 AT2G34930 "AT2G34930" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 700 (251.5 bits), Expect = 4.9e-69, P = 4.9e-69
Identities = 201/578 (34%), Positives = 292/578 (50%)
Query: 32 CQEAERKALLQFKQSLRDPSGQLSSWVGEDCCSWSGVSCNNRTASVIKLNLNNPFRDSFG 91
C ER+ALL F+ +L D S +L SW G DCC+W GV C+ RT+ V+K++L NP +D
Sbjct: 33 CISTERQALLTFRAALTDLSSRLFSWSGPDCCNWPGVLCDARTSHVVKIDLRNPSQD-VR 91
Query: 92 SFEDDAGHELGGEISPSXXXXXXXXXXXXSMNNFTGFQVPEFIGSLKELRYLNLSGSFFS 151
S E G L G+I PS S N+F ++PEFIG + LRYLNLS S FS
Sbjct: 92 SDEYKRG-SLRGKIHPSLTQLKFLSYLDLSSNDFNELEIPEFIGQIVSLRYLNLSSSSFS 150
Query: 152 GTIPQTXXXXXXXXXXXXXXXX-DQSNQI-----DLEWLSGLSS-LVYFNLGGADLSKAG 204
G IP + S + +L WLS LSS L Y N+G +LS AG
Sbjct: 151 GEIPTSLGNLSKLESLDLYAESFGDSGTLSLRASNLRWLSSLSSSLKYLNMGYVNLSGAG 210
Query: 205 AYWLEVFNKLHSFVEXXXXXXXXXXXX-XXXXXXXXXXXQVLDLSNNDFNSTTPHWLFNI 263
WL+ F+++ + E +VLDLS N NS P+WLF +
Sbjct: 211 ETWLQDFSRISALKELHLFNSELKNLPPTLSSSADLKLLEVLDLSENSLNSPIPNWLFGL 270
Query: 264 TSLLCLDLGSNDLQGDIPDGFASLNSLQELDLSGNSFLGGQLSRNLGKLCNLRTMILSRN 323
T+L L L + LQG IP GF +L L+ LDLS N L G++ LG L L+ + LS N
Sbjct: 271 TNLRKLFLRWDFLQGSIPTGFKNLKLLETLDLSNNLALQGEIPSVLGDLPQLKFLDLSAN 330
Query: 324 NISSEVSDFLDGLSECT-NSILLEKLELRFNQFTGILPISLGSLKNLRHLVLWQNSFLGS 382
++ ++ FLD S NS++ L+L N+ G LP SLGSL+NL+ L L NSF GS
Sbjct: 331 ELNGQIHGFLDAFSRNKGNSLVF--LDLSSNKLAGTLPESLGSLRNLQTLDLSSNSFTGS 388
Query: 383 IPPSIGNLTLLKELYLASNQMNGQKISDSYQHLKNQTELRTL------VLNKARISDTIS 436
+P SIGN+ LK+L L++N MNG I++S L +L + VL K+ + S
Sbjct: 389 VPSSIGNMASLKKLDLSNNAMNGT-IAESLGQLAELVDLNLMANTWGGVLQKSHFVNLRS 447
Query: 437 DWFWQLSLTLDELDVAYNELRGRVPNSLGFNFPAKVDL-SFNNFE-GRLLLWSFNVTKLY 494
+ LT + Y L ++P++ + P +++L N G +W TKL
Sbjct: 448 --LKSIRLTTEP----YRSLVFKLPST--WIPPFRLELIQIENCRIGLFPMWLQVQTKL- 498
Query: 495 LRDNSFSGLIPNDIGQNLPFLTDLGNLKQLITLVISNNNLSGEIPLLFSNISF--LYILD 552
+F L I +P G ++ L+++NN + G +P ++F L +D
Sbjct: 499 ----NFVTLRNTGIEDTIPDSWFSGISSKVTYLILANNRIKGRLP---QKLAFPKLNTID 551
Query: 553 MSNNSLSGSTPESIGSLRTVKFLVLRNNYLSGKLPLSL 590
+S+N+ G+ P + S + + NN+ SG LP ++
Sbjct: 552 LSSNNFEGTFP--LWSTNATELRLYENNF-SGSLPQNI 586
|
|
| UNIPROTKB|Q40640 Xa21 "Receptor kinase-like protein" [Oryza sativa (taxid:4530)] | Back alignment and assigned GO terms |
|---|
Score = 456 (165.6 bits), Expect = 4.3e-42, P = 4.3e-42
Identities = 178/590 (30%), Positives = 255/590 (43%)
Query: 31 GCQEAERKALLQFKQSLRDPSGQ-LSSW--VGE-DCCSWSGVSCNNRTAS----VIKL-- 80
G + ALL FK SL GQ L+SW G C+W GV C R V+KL
Sbjct: 27 GDAAGDELALLSFKSSLLYQGGQSLASWNTSGHGQHCTWVGVVCGRRRRRHPHRVVKLLL 86
Query: 81 ---NLNNPFRDSFG--SF--EDDAGHE-LGGEISPSXXXXXXXXXXXXSMNNFTGFQVPE 132
NL+ S G SF E D G L GEI P S N+ G +P
Sbjct: 87 RSSNLSGIISPSLGNLSFLRELDLGDNYLSGEIPPELSRLSRLQLLELSDNSIQG-SIPA 145
Query: 133 FIGSLKELRYLNLSGSFFSGTIPQTXXXXXXXXXXXXXXXXDQSNQIDLEWLSGLSSLVY 192
IG+ +L L+LS + G IP+ S +I L L+SL
Sbjct: 146 AIGACTKLTSLDLSHNQLRGMIPREIGASLKHLSNLYLYKNGLSGEIPSA-LGNLTSLQE 204
Query: 193 FNLGGADLSKAGAYWLEVFNKLHSFVEXXXXXXXXXXXXXXXXXXXXXXXQVLDLSNNDF 252
F+L LS GA + +L S + + + N
Sbjct: 205 FDLSFNRLS--GAIPSSL-GQLSSLL-TMNLGQNNLSGMIPNSIWNLSSLRAFSVRENKL 260
Query: 253 NSTTPHWLFNITSLL-CLDLGSNDLQGDIPDGFASLNSLQELDLSGNSFLGGQLSRNLGK 311
P F LL +D+G+N G IP A+ + L + + GN F G ++ G+
Sbjct: 261 GGMIPTNAFKTLHLLEVIDMGTNRFHGKIPASVANASHLTVIQIYGNLF-SGIITSGFGR 319
Query: 312 LCNLRTMILSRNNISSEVSDFLDGLSECTNSILLEKLELRFNQFTGILPISLGSLK-NLR 370
L NL + L RN + D +S+ TN L+ L L N G+LP S +L +L
Sbjct: 320 LRNLTELYLWRNLFQTREQDDWGFISDLTNCSKLQTLNLGENNLGGVLPNSFSNLSTSLS 379
Query: 371 HLVLWQNSFLGSIPPSIGNLTLLKELYLASNQMNGQKISDSYQHLKNQTELRTLVLNKAR 430
L L N GSIP IGNL L+ LYL +N G + S LKN L L+ +
Sbjct: 380 FLALELNKITGSIPKDIGNLIGLQHLYLCNNNFRGS-LPSSLGRLKN---LGILLAYENN 435
Query: 431 ISDTISDWFWQLSLTLDELDVAYNELRGRVPNSLGFNFP--AKVDLSFNNFEGRLLLWSF 488
+S +I L+ L+ L + N+ G +P +L N + LS NN G + F
Sbjct: 436 LSGSIPLAIGNLT-ELNILLLGTNKFSGWIPYTLS-NLTNLLSLGLSTNNLSGPIPSELF 493
Query: 489 NVTKLYLRDNSFSGLIPNDIGQNLPFLTDLGNLKQLITLVISNNNLSGEIPLLFSNISFL 548
N+ L + N + N++ ++P ++G+LK L+ +N LSG+IP + L
Sbjct: 494 NIQTLSIMIN----VSKNNLEGSIP--QEIGHLKNLVEFHAESNRLSGKIPNTLGDCQLL 547
Query: 549 YILDMSNNSLSGSTPESIGSLRTVKFLVLRNNYLSGKLPLSLKNCTFQES 598
L + NN LSGS P ++G L+ ++ L L +N LSG++P SL + T S
Sbjct: 548 RYLYLQNNLLSGSIPSALGQLKGLETLDLSSNNLSGQIPTSLADITMLHS 597
|
|
| TAIR|locus:2043540 AT2G25790 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 363 (132.8 bits), Expect = 6.2e-42, Sum P(2) = 6.2e-42
Identities = 123/365 (33%), Positives = 176/365 (48%)
Query: 243 QVLDLSNNDFNSTTPHWLFNITS--LLCLDLGSNDLQGDIPDGFASLNSLQELDLSGNSF 300
Q ++LSNN+ + PH +F +S L L+L +N+ G IP GF L +L LDLS N F
Sbjct: 100 QTINLSNNNLSGPIPHDIFTTSSPSLRYLNLSNNNFSGSIPRGF--LPNLYTLDLSNNMF 157
Query: 301 LGGQLSRNLGKLCNLRTMILSRNNISSEVSDFLDGLSECTNSILLEKLELRFNQFTGILP 360
G ++ ++G NLR + L N ++ V +L LS LE L L NQ TG +P
Sbjct: 158 TG-EIYNDIGVFSNLRVLDLGGNVLTGHVPGYLGNLSR------LEFLTLASNQLTGGVP 210
Query: 361 ISLGSLKNLRHLVLWQNSFLGSIPPSIGNLTLLKELYLASNQMNGQKISDSYQHLKNQTE 420
+ LG +KNL+ + L N+ G IP IG L+ L L L N ++G I S LK +
Sbjct: 211 VELGKMKNLKWIYLGYNNLSGEIPYQIGGLSSLNHLDLVYNNLSGP-IPPSLGDLK---K 266
Query: 421 LRTLVLNKARISDTISDWFWQLSLTLDELDVAYNELRGRVPNSLGFNFPAKV-DLSFNNF 479
L + L + ++S I + L L LD + N L G +P + ++ L NN
Sbjct: 267 LEYMFLYQNKLSGQIPPSIFSLQ-NLISLDFSDNSLSGEIPELVAQMQSLEILHLFSNNL 325
Query: 480 EGRLL--LWSFNVTK-LYLRDNSFSGLIPNDIGQ--NLPFLTDLG--NLK---------- 522
G++ + S K L L N FSG IP ++G+ NL L DL NL
Sbjct: 326 TGKIPEGVTSLPRLKVLQLWSNRFSGGIPANLGKHNNLTVL-DLSTNNLTGKLPDTLCDS 384
Query: 523 -QLITLVISNNNLSGEIPLLFSNISFLYILDMSNNSLSGSTPESIGSLRTVKFLVLRNNY 581
L L++ +N+L +IP L + + NN SG P L+ V FL L NN
Sbjct: 385 GHLTKLILFSNSLDSQIPPSLGMCQSLERVRLQNNGFSGKLPRGFTKLQLVNFLDLSNNN 444
Query: 582 LSGKL 586
L G +
Sbjct: 445 LQGNI 449
|
|
| TAIR|locus:2032553 HSL1 "HAESA-like 1" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 380 (138.8 bits), Expect = 9.3e-42, Sum P(2) = 9.3e-42
Identities = 112/347 (32%), Positives = 169/347 (48%)
Query: 245 LDLSNNDFNSTTPHWLFNITSLLCLDLGSNDLQGDIPDGFASLNSLQELDLSGNSFLGGQ 304
LDL+ N+F+ P +L L L N L G IP ++++L+ L+LS N F +
Sbjct: 137 LDLTGNNFSGDIPASFGKFENLEVLSLVYNLLDGTIPPFLGNISTLKMLNLSYNPFSPSR 196
Query: 305 LSRNLGKLCNLRTMILSRNNISSEVSDFLDGLSECTNSILLEKLELRFNQFTGILPISLG 364
+ G L NL M L+ ++ ++ D L LS+ L L+L N G +P SLG
Sbjct: 197 IPPEFGNLTNLEVMWLTECHLVGQIPDSLGQLSK------LVDLDLALNDLVGHIPPSLG 250
Query: 365 SLKNLRHLVLWQNSFLGSIPPSIGNLTLLKELYLASNQMNGQKISDSYQHLKNQTELRTL 424
L N+ + L+ NS G IPP +GNL L+ L + NQ+ G KI D + L +L
Sbjct: 251 GLTNVVQIELYNNSLTGEIPPELGNLKSLRLLDASMNQLTG-KIPDELCRVP----LESL 305
Query: 425 VLNKARISDTISDWFWQLSLTLDELDVAYNELRGRVPNSLGFNFPAK-VDLSFNNFEGRL 483
L + + + LS L E+ + N L G +P LG N P + +D+S N F G L
Sbjct: 306 NLYENNLEGELPASI-ALSPNLYEIRIFGNRLTGGLPKDLGLNSPLRWLDVSENEFSGDL 364
Query: 484 ---LLWSFNVTKLYLRDNSFSGLIPNDIGQNLPFLTDLGNLKQLITLVISNNNLSGEIPL 540
L + +L + NSFSG+IP L + + L + ++ N SG +P
Sbjct: 365 PADLCAKGELEELLIIHNSFSGVIPES----------LADCRSLTRIRLAYNRFSGSVPT 414
Query: 541 LFSNISFLYILDMSNNSLSGSTPESIGSLRTVKFLVLRNNYLSGKLP 587
F + + +L++ NNS SG +SIG + L+L NN +G LP
Sbjct: 415 GFWGLPHVNLLELVNNSFSGEISKSIGGASNLSLLILSNNEFTGSLP 461
|
|
| TAIR|locus:2825389 RLP11 "AT1G71390" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 356 (130.4 bits), Expect = 1.6e-41, Sum P(2) = 1.6e-41
Identities = 109/363 (30%), Positives = 174/363 (47%)
Query: 245 LDLSNNDFNSTTPHWLFNITSLLCLDLGSNDLQGDIPDGFASLNSLQELDLSGNSFLGGQ 304
L+LS+N P+ + N+ L L LG NDL G+IP +L+ L +LDL NS +G +
Sbjct: 131 LELSSNRLVGEIPYSIGNLKQLRNLSLGDNDLIGEIPSSLGNLSLLLDLDLWNNSLVG-E 189
Query: 305 LSRNLGKLCNLRTMILSRNNISSEVSDFLDGLSECTNSILLEKLELRFNQFTGILPISLG 364
+ ++G L LR M L RN++S + +S TN L + + FN FT LP L
Sbjct: 190 VPASIGNLNELRVMSLDRNSLSGSIP-----IS-FTNLTKLSEFRIFFNNFTS-LPSDLS 242
Query: 365 SLKNLRHLVLWQNSFLGSIPPSIGNLTLLKELYLASNQMNGQKISDSYQHLKNQTELRTL 424
NL + NSF G P + ++ L + + NQ +G + ++ + ++L+ L
Sbjct: 243 GFHNLVTFDISANSFSGHFPKFLFSIPSLAWVSMDRNQFSGPI---EFANISSSSKLQNL 299
Query: 425 VLNKARISDTISDWFWQLSLTLDELDVAYNELRGRVPNSLGFNFPAKV-DLSFNNFEGRL 483
+L + ++ +I + + L L LDVA+N + G VP S+ ++ S N EG +
Sbjct: 300 ILTRNKLDGSIPESISKF-LNLVLLDVAHNNISGPVPRSMSKLVSLRIFGFSNNKLEGEV 358
Query: 484 LLWSFNVTKLYLRDNSFSGLIPNDIGQNLPFLTDLG-------------NLKQLITLVIS 530
W + ++ L NSFS + + + DL LK L L +S
Sbjct: 359 PSWLWRLSSTMLSHNSFSSFEKIYSKETMIQVLDLSFNSFRGTFPVWICKLKGLHFLDLS 418
Query: 531 NNNLSGEIPLLFSNISFLYILDMSNNSLSGSTPESIGSLRTVKFLVLRNNYLSGKLPLSL 590
NN +G IPL N + ++ + NN SG+ P+ + ++ L + N L GK P SL
Sbjct: 419 NNLFNGSIPLCLRNFNLTGLI-LGNNKFSGTLPDIFANNTNLQSLDVSGNQLEGKFPKSL 477
Query: 591 KNC 593
NC
Sbjct: 478 INC 480
|
|
| TAIR|locus:2182870 EMS1 "EXCESS MICROSPOROCYTES1" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 358 (131.1 bits), Expect = 7.9e-41, Sum P(2) = 7.9e-41
Identities = 117/358 (32%), Positives = 174/358 (48%)
Query: 243 QVLD---LSNNDFNSTTPHWLFNITSLLCLDLGSNDLQGDIPDGFASLNSLQELDLSGNS 299
+VLD L+NN F+ PH + + L L L SN L G IP SL+ +DLSGN
Sbjct: 329 KVLDSLLLANNRFSGEIPHEIEDCPMLKHLSLASNLLSGSIPRELCGSGSLEAIDLSGN- 387
Query: 300 FLGGQLSRNLGKLCNLRTMILSRNNISSEVSDFLDGLSECTNSILLEKLELRFNQFTGIL 359
L G + +L ++L+ N I+ + + L L L L+L N FTG +
Sbjct: 388 LLSGTIEEVFDGCSSLGELLLTNNQINGSIPEDLWKLP-------LMALDLDSNNFTGEI 440
Query: 360 PISLGSLKNLRHLVLWQNSFLGSIPPSIGNLTLLKELYLASNQMNGQKISDSYQHLKNQT 419
P SL NL N G +P IGN LK L L+ NQ+ G+ I + + T
Sbjct: 441 PKSLWKSTNLMEFTASYNRLEGYLPAEIGNAASLKRLVLSDNQLTGE-IP---REIGKLT 496
Query: 420 ELRTLVLNKARISDTISDWFWQLSLTLDELDVAYNELRGRVPNSLGFNFPAK-VDLSFNN 478
L L LN I + +L LD+ N L+G++P+ + + + LS+NN
Sbjct: 497 SLSVLNLNANMFQGKIPVELGDCT-SLTTLDLGSNNLQGQIPDKITALAQLQCLVLSYNN 555
Query: 479 FEGRLLLW-SFNVTKLYLRDNSF---SGLIPNDIGQNL---PFLTDLGNLKQLITLVISN 531
G + S ++ + D SF G+ D+ N P +LG L+ + +SN
Sbjct: 556 LSGSIPSKPSAYFHQIEMPDLSFLQHHGIF--DLSYNRLSGPIPEELGECLVLVEISLSN 613
Query: 532 NNLSGEIPLLFSNISFLYILDMSNNSLSGSTPESIGSLRTVKFLVLRNNYLSGKLPLS 589
N+LSGEIP S ++ L ILD+S N+L+GS P+ +G+ ++ L L NN L+G +P S
Sbjct: 614 NHLSGEIPASLSRLTNLTILDLSGNALTGSIPKEMGNSLKLQGLNLANNQLNGHIPES 671
|
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| TAIR|locus:2149922 EFR "EF-TU receptor" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 358 (131.1 bits), Expect = 5.3e-40, Sum P(2) = 5.3e-40
Identities = 115/378 (30%), Positives = 183/378 (48%)
Query: 243 QVLDLSNNDFNSTTPHWLFNITSLLCLDLGSNDLQGDIPDGFASLNSLQELDLSGNSFLG 302
++L+L++N F ST P + + L L++ N L+G IP ++ + L +DLS N LG
Sbjct: 100 RLLNLADNSFGSTIPQKVGRLFRLQYLNMSYNLLEGRIPSSLSNCSRLSTVDLSSNH-LG 158
Query: 303 GQLSRNLGKLCNLRTMILSRNNISSEVSDFLDGLSECTNSILLEKLELRFNQFTGILPIS 362
+ LG L L + LS+NN++ +F L T+ L+KL+ +NQ G +P
Sbjct: 159 HGVPSELGSLSKLAILDLSKNNLTG---NFPASLGNLTS---LQKLDFAYNQMRGEIPDE 212
Query: 363 LGSLKNLRHLVLWQNSFLGSIPPSIGNLTLLKELYLASNQMNGQKISDSYQHLKNQTELR 422
+ L + + NSF G PP++ N++ L+ L LA N +G +D L N LR
Sbjct: 213 VARLTQMVFFQIALNSFSGGFPPALYNISSLESLSLADNSFSGNLRADFGYLLPN---LR 269
Query: 423 TLVLNKARISDTISDWFWQLSLTLDELDVAYNELRGRVPNSLGF--NF----PAKVDLSF 476
L+L + + I +S +L+ D++ N L G +P S G N L
Sbjct: 270 RLLLGTNQFTGAIPKTLANIS-SLERFDISSNYLSGSIPLSFGKLRNLWWLGIRNNSLGN 328
Query: 477 NNFEGRLLLWSF-NVTKLYLRD---NSFSGLIPNDI------------GQNLPFLT---D 517
N+ G + + N T+L D N G +P I GQNL T D
Sbjct: 329 NSSSGLEFIGAVANCTQLEYLDVGYNRLGGELPASIANLSTTLTSLFLGQNLISGTIPHD 388
Query: 518 LGNLKQLITLVISNNNLSGEIPLLFSNISFLYILDMSNNSLSGSTPESIGSLRTVKFLVL 577
+GNL L L + N LSGE+P+ F + L ++D+ +N++SG P G++ ++ L L
Sbjct: 389 IGNLVSLQELSLETNMLSGELPVSFGKLLNLQVVDLYSNAISGEIPSYFGNMTRLQKLHL 448
Query: 578 RNNYLSGKLPLSLKNCTF 595
+N G++P SL C +
Sbjct: 449 NSNSFHGRIPQSLGRCRY 466
|
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| TAIR|locus:2005540 HAE "HAESA" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 386 (140.9 bits), Expect = 1.4e-39, Sum P(2) = 1.4e-39
Identities = 121/365 (33%), Positives = 178/365 (48%)
Query: 245 LDLSNNDFNSTTPHWLFNITSLLCLDLGSNDLQGDIPDGFASLNSLQELDLSGNSFLGGQ 304
L++S N+ + T P L L+L N L G IP ++ +L+EL L+ N F Q
Sbjct: 144 LEISGNNLSDTIPSSFGEFRKLESLNLAGNFLSGTIPASLGNVTTLKELKLAYNLFSPSQ 203
Query: 305 LSRNLGKLCNLRTMILSRNNISSEVSDFLDGLSECTNSILLEKLELRFNQFTGILPISLG 364
+ LG L L+ + L+ N+ + L L+ N L+L FNQ TG +P +
Sbjct: 204 IPSQLGNLTELQVLWLAGCNLVGPIPPSLSRLTSLVN------LDLTFNQLTGSIPSWIT 257
Query: 365 SLKNLRHLVLWQNSFLGSIPPSIGNLTLLKELYLASNQMNGQKISDSYQHLKNQTELRTL 424
LK + + L+ NSF G +P S+GN+T LK + N++ G KI D+ N L +L
Sbjct: 258 QLKTVEQIELFNNSFSGELPESMGNMTTLKRFDASMNKLTG-KIPDNL----NLLNLESL 312
Query: 425 VLNKARISDTISDWFWQLSLTLDELDVAYNELRGRVPNSLGFNFPAK-VDLSFNNFEGRL 483
L + + + + + S TL EL + N L G +P+ LG N P + VDLS+N F G +
Sbjct: 313 NLFENMLEGPLPESITR-SKTLSELKLFNNRLTGVLPSQLGANSPLQYVDLSYNRFSGEI 371
Query: 484 ---LLWSFNVTKLYLRDNSFSGLIPNDIGQNLPFLTD--LGN-------------LKQLI 525
+ + L L DNSFSG I N++G+ LT L N L +L
Sbjct: 372 PANVCGEGKLEYLILIDNSFSGEISNNLGK-CKSLTRVRLSNNKLSGQIPHGFWGLPRLS 430
Query: 526 TLVISNNNLSGEIPLLFSNISFLYILDMSNNSLSGSTPESIGSLRTVKFLVLRNNYLSGK 585
L +S+N+ +G IP L L +S N SGS P IGSL + + N SG+
Sbjct: 431 LLELSDNSFTGSIPKTIIGAKNLSNLRISKNRFSGSIPNEIGSLNGIIEISGAENDFSGE 490
Query: 586 LPLSL 590
+P SL
Sbjct: 491 IPESL 495
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| TAIR|locus:2170483 FLS2 "FLAGELLIN-SENSITIVE 2" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 354 (129.7 bits), Expect = 9.2e-39, Sum P(2) = 9.2e-39
Identities = 113/350 (32%), Positives = 169/350 (48%)
Query: 245 LDLSNNDFNSTTPHWLFNITSLLCLDLGSNDLQGDIPDGFASLNSLQELDLSGNSFLGGQ 304
+ + N F P +FN ++L L + N+L G + L L+ L +S NS L G
Sbjct: 436 ISIGRNHFTGEIPDDIFNCSNLETLSVADNNLTGTLKPLIGKLQKLRILQVSYNS-LTGP 494
Query: 305 LSRNLGKLCNLRTMILSRNNISSEVSDFLDGLSECTNSILLEKLELRFNQFTGILPISLG 364
+ R +G L +L + L N + + E +N LL+ L + N G +P +
Sbjct: 495 IPREIGNLKDLNILYLHSNGFTGRIP------REMSNLTLLQGLRMYSNDLEGPIPEEMF 548
Query: 365 SLKNLRHLVLWQNSFLGSIPPSIGNLTLLKELYLASNQMNGQKISDSYQHLKNQTELRTL 424
+K L L L N F G IP L L L L N+ NG I S LK+ + L T
Sbjct: 549 DMKLLSVLDLSNNKFSGQIPALFSKLESLTYLSLQGNKFNGS-IPAS---LKSLSLLNTF 604
Query: 425 VLNKARISDTI-SDWFWQLSLTLDELDVAYNELRGRVPNSLG-FNFPAKVDLSFNNFEG- 481
++ ++ TI + L L+ + N L G +P LG ++DLS N F G
Sbjct: 605 DISDNLLTGTIPGELLASLKNMQLYLNFSNNLLTGTIPKELGKLEMVQEIDLSNNLFSGS 664
Query: 482 --RLLLWSFNVTKLYLRDNSFSGLIPNDIGQNLPFLTDLGNLKQLITLVISNNNLSGEIP 539
R L NV L N+ SG IP+++ Q + D+ +I+L +S N+ SGEIP
Sbjct: 665 IPRSLQACKNVFTLDFSQNNLSGHIPDEVFQGM----DM-----IISLNLSRNSFSGEIP 715
Query: 540 LLFSNISFLYILDMSNNSLSGSTPESIGSLRTVKFLVLRNNYLSGKLPLS 589
F N++ L LD+S+N+L+G PES+ +L T+K L L +N L G +P S
Sbjct: 716 QSFGNMTHLVSLDLSSNNLTGEIPESLANLSTLKHLKLASNNLKGHVPES 765
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| TAIR|locus:2160791 AT5G63930 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 423 (154.0 bits), Expect = 1.8e-38, P = 1.8e-38
Identities = 173/594 (29%), Positives = 255/594 (42%)
Query: 36 ERKALLQFKQSLRDPSGQLSSWVGEDC--CSWSGVSCNNRTAS--VIKLNLNN-----PF 86
E + LL+ K D L +W D C W+GV C+N ++ V+ LNL++
Sbjct: 30 EGQYLLEIKSKFVDAKQNLRNWNSNDSVPCGWTGVMCSNYSSDPEVLSLNLSSMVLSGKL 89
Query: 87 RDSFGSF----EDDAGHE-LGGEISPSXXXXXXXXXXXXSMNNFTGFQVPEFIGSLKELR 141
S G + D + L G+I + N F G ++P IG L L
Sbjct: 90 SPSIGGLVHLKQLDLSYNGLSGKIPKEIGNCSSLEILKLNNNQFDG-EIPVEIGKLVSLE 148
Query: 142 YLNLSGSFFSGTIPQTXXXXXXXXXXXXXXXXDQSNQIDLEWLSGLSSLVYFNLGGADLS 201
L + + SG++P + S Q+ + L L F G +S
Sbjct: 149 NLIIYNNRISGSLP-VEIGNLLSLSQLVTYSNNISGQLPRS-IGNLKRLTSFRAGQNMIS 206
Query: 202 KAGAYWLEVFNKLHSFVEXXXXXXXXXXXXXXXXXXXXXXXQVLDLSNNDFNSTTPHWLF 261
G+ E+ S V QV+ L N+F+ P +
Sbjct: 207 --GSLPSEI-GGCESLVMLGLAQNQLSGELPKEIGMLKKLSQVI-LWENEFSGFIPREIS 262
Query: 262 NITSLLCLDLGSNDLQGDIPDGFASLNSLQELDLSGNSFLGGQLSRNLGKLCNLRTMILS 321
N TSL L L N L G IP L SL+ L L N L G + R +G L + S
Sbjct: 263 NCTSLETLALYKNQLVGPIPKELGDLQSLEFLYLYRNG-LNGTIPREIGNLSYAIEIDFS 321
Query: 322 RNNISSEVS---DFLDGL-------SECTNSILLE--------KLELRFNQFTGILPISL 363
N ++ E+ ++GL ++ T +I +E KL+L N TG +P+
Sbjct: 322 ENALTGEIPLELGNIEGLELLYLFENQLTGTIPVELSTLKNLSKLDLSINALTGPIPLGF 381
Query: 364 GSLKNLRHLVLWQNSFLGSIPPSIGNLTLLKELYLASNQMNGQKISDSYQHLKNQTELRT 423
L+ L L L+QNS G+IPP +G + L L ++ N ++G+ SY L + +
Sbjct: 382 QYLRGLFMLQLFQNSLSGTIPPKLGWYSDLWVLDMSDNHLSGR--IPSYLCLHSNMIILN 439
Query: 424 LVLNKARISDTISDWFWQLSLTLDELDVAYNELRGRVPNSL--GFNFPAKVDLSFNNFEG 481
L N +S I TL +L +A N L GR P++L N A ++L N F G
Sbjct: 440 LGTNN--LSGNIPTGITTCK-TLVQLRLARNNLVGRFPSNLCKQVNVTA-IELGQNRFRG 495
Query: 482 RLLLWSFNVT---KLYLRDNSFSGLIPNDIGQNLPFLTDLGNLKQLITLVISNNNLSGEI 538
+ N + +L L DN F+G +P +IG L QL TL IS+N L+GE+
Sbjct: 496 SIPREVGNCSALQRLQLADNGFTGELPREIGM----------LSQLGTLNISSNKLTGEV 545
Query: 539 PLLFSNISFLYILDMSNNSLSGSTPESIGSLRTVKFLVLRNNYLSGKLPLSLKN 592
P N L LDM N+ SG+ P +GSL ++ L L NN LSG +P++L N
Sbjct: 546 PSEIFNCKMLQRLDMCCNNFSGTLPSEVGSLYQLELLKLSNNNLSGTIPVALGN 599
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Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
No confident hit for EC number transfering in SWISSPROT detected by BLAST
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
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 | GSVIVG00003143001 | SubName- Full=Chromosome undetermined scaffold_139, whole genome shotgun sequence; (890 aa) | |||||||||
(Vitis vinifera) | |||||||||||
Predicted Functional Partners: | |||||||||||
| Sorry, there are no predicted associations at the current settings. | |||||||||||
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 598 | |||
| PLN00113 | 968 | PLN00113, PLN00113, leucine-rich repeat receptor-l | 2e-48 | |
| PLN00113 | 968 | PLN00113, PLN00113, leucine-rich repeat receptor-l | 9e-32 | |
| PLN00113 | 968 | PLN00113, PLN00113, leucine-rich repeat receptor-l | 4e-31 | |
| PLN00113 | 968 | PLN00113, PLN00113, leucine-rich repeat receptor-l | 4e-22 | |
| PLN03150 | 623 | PLN03150, PLN03150, hypothetical protein; Provisio | 1e-15 | |
| PLN00113 | 968 | PLN00113, PLN00113, leucine-rich repeat receptor-l | 2e-12 | |
| PLN03150 | 623 | PLN03150, PLN03150, hypothetical protein; Provisio | 2e-12 | |
| PLN00113 | 968 | PLN00113, PLN00113, leucine-rich repeat receptor-l | 1e-11 | |
| PLN03150 | 623 | PLN03150, PLN03150, hypothetical protein; Provisio | 4e-09 | |
| pfam08263 | 42 | pfam08263, LRRNT_2, Leucine rich repeat N-terminal | 7e-09 | |
| PLN03150 | 623 | PLN03150, PLN03150, hypothetical protein; Provisio | 1e-07 | |
| pfam13855 | 60 | pfam13855, LRR_8, Leucine rich repeat | 4e-07 | |
| PLN03150 | 623 | PLN03150, PLN03150, hypothetical protein; Provisio | 9e-07 | |
| PLN03150 | 623 | PLN03150, PLN03150, hypothetical protein; Provisio | 1e-06 | |
| cd00116 | 319 | cd00116, LRR_RI, Leucine-rich repeats (LRRs), ribo | 5e-06 | |
| PLN03150 | 623 | PLN03150, PLN03150, hypothetical protein; Provisio | 1e-05 | |
| PLN03150 | 623 | PLN03150, PLN03150, hypothetical protein; Provisio | 4e-05 | |
| PLN03150 | 623 | PLN03150, PLN03150, hypothetical protein; Provisio | 2e-04 | |
| cd00116 | 319 | cd00116, LRR_RI, Leucine-rich repeats (LRRs), ribo | 3e-04 | |
| cd00116 | 319 | cd00116, LRR_RI, Leucine-rich repeats (LRRs), ribo | 4e-04 | |
| COG4886 | 394 | COG4886, COG4886, Leucine-rich repeat (LRR) protei | 0.002 |
| >gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional | Back alignment and domain information |
|---|
Score = 181 bits (461), Expect = 2e-48
Identities = 173/584 (29%), Positives = 259/584 (44%), Gaps = 133/584 (22%)
Query: 11 LLLLLLLSGILHPETIQLGSGCQEAERKALLQFKQSLRDPSGQLSSW-VGEDCCSWSGVS 69
L L L +LH E ++L LL FK S+ DP LS+W D C W G++
Sbjct: 16 LFFLFLNFSMLHAEELEL-----------LLSFKSSINDPLKYLSNWNSSADVCLWQGIT 64
Query: 70 CNNRTASVIKLNLNNPFRDSFGSFEDDAGHELGGEISPSLLQLKDLEYLDLSMNNFTGFQ 129
CNN ++ V+ ++L +G + G+IS ++ F+
Sbjct: 65 CNN-SSRVVSIDL--------------SGKNISGKISSAI------------------FR 91
Query: 130 VPEFIGSLKELRYLNLSGSFFSGTIPQTLGNLSNLLYLDLNNFLDQSNQIDLEWLSGLSS 189
+P ++ +NLS + SG IP + S SS
Sbjct: 92 LPY-------IQTINLSNNQLSGPIPDDIFTTS-------------------------SS 119
Query: 190 LVYFNLGGADLSKAGAYWLEVFNKLHSFVELHLPNCNLPSLPLSFPSLNFASLQVLDLSN 249
L Y NL + + S P + +L+ LDLSN
Sbjct: 120 LRYLNLSNNNFTG------------------------------SIPRGSIPNLETLDLSN 149
Query: 250 NDFNSTTPHWLFNITSLLCLDLGSNDLQGDIPDGFASLNSLQELDLSGNSFLGGQLSRNL 309
N + P+ + + +SL LDLG N L G IP+ +L SL+ L L+ N +G Q+ R L
Sbjct: 150 NMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVG-QIPREL 208
Query: 310 GKLCNLRTMILSRNNISSEVSDFLDGLSECTNSILLEKLELRFNQFTGILPISLGSLKNL 369
G++ +L+ + L NN+S E+ + GL+ L L+L +N TG +P SLG+LKNL
Sbjct: 209 GQMKSLKWIYLGYNNLSGEIPYEIGGLTS------LNHLDLVYNNLTGPIPSSLGNLKNL 262
Query: 370 RHLVLWQNSFLGSIPPSIGNLTLLKELYLASNQMNGQKISDSYQHLKNQTELRTLVLNKA 429
++L L+QN G IPPSI +L L L L+ N ++G+ I + L+N L L L
Sbjct: 263 QYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGE-IPELVIQLQN---LEILHLFSN 318
Query: 430 RISDTISDWFWQLSLTLDELDVAYNELRGRVPNSLG-FNFPAKVDLSFNNFEGRL---LL 485
+ I L L L + N+ G +P +LG N +DLS NN G + L
Sbjct: 319 NFTGKIPVALTSLP-RLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIPEGLC 377
Query: 486 WSFNVTKLYLRDNSFSGLIPNDIGQNLPFLTDLGNLKQLITLVISNNNLSGEIPLLFSNI 545
S N+ KL L NS G IP LG + L + + +N+ SGE+P F+ +
Sbjct: 378 SSGNLFKLILFSNSLEGEIPK----------SLGACRSLRRVRLQDNSFSGELPSEFTKL 427
Query: 546 SFLYILDMSNNSLSGSTPESIGSLRTVKFLVLRNNYLSGKLPLS 589
+Y LD+SNN+L G + +++ L L N G LP S
Sbjct: 428 PLVYFLDISNNNLQGRINSRKWDMPSLQMLSLARNKFFGGLPDS 471
|
Length = 968 |
| >gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional | Back alignment and domain information |
|---|
Score = 131 bits (330), Expect = 9e-32
Identities = 104/331 (31%), Positives = 163/331 (49%), Gaps = 47/331 (14%)
Query: 262 NITSLLCLDLGSNDLQGDIPDGFASLNSLQELDLSGNSFLGGQLSRNLGKLC-NLRTMIL 320
N + ++ +DL ++ G I L +Q ++LS N L G + ++ +LR + L
Sbjct: 67 NSSRVVSIDLSGKNISGKISSAIFRLPYIQTINLSNNQ-LSGPIPDDIFTTSSSLRYLNL 125
Query: 321 SRNNISSEVSDFLDGLSECTNSI-LLEKLELRFNQFTGILPISLGSLKNLRHLVLWQNSF 379
S NN + + SI LE L+L N +G +P +GS +L+ L L N
Sbjct: 126 SNNNFTGSIP---------RGSIPNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVL 176
Query: 380 LGSIPPSIGNLTLLKELYLASNQMNGQKISDSYQHLKNQTELRTLVLNKARISDTISDWF 439
+G IP S+ NLT L+ L LASNQ+ GQ + L L+ + L +S I
Sbjct: 177 VGKIPNSLTNLTSLEFLTLASNQLVGQIPRE----LGQMKSLKWIYLGYNNLSGEIPYEI 232
Query: 440 WQLSLTLDELDVAYNELRGRVPNSLGFNFPAKVDLSFNNFEGRLLLWSFNVTKLYLRDNS 499
L+ +L+ LD+ YN L G +P+SLG +L N+ L+L N
Sbjct: 233 GGLT-SLNHLDLVYNNLTGPIPSSLG-------NLK-------------NLQYLFLYQNK 271
Query: 500 FSGLIPNDIGQNLPFLTDLGNLKQLITLVISNNNLSGEIPLLFSNISFLYILDMSNNSLS 559
SG IP I +L++LI+L +S+N+LSGEIP L + L IL + +N+ +
Sbjct: 272 LSGPIPPSIF----------SLQKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFT 321
Query: 560 GSTPESIGSLRTVKFLVLRNNYLSGKLPLSL 590
G P ++ SL ++ L L +N SG++P +L
Sbjct: 322 GKIPVALTSLPRLQVLQLWSNKFSGEIPKNL 352
|
Length = 968 |
| >gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional | Back alignment and domain information |
|---|
Score = 129 bits (325), Expect = 4e-31
Identities = 112/353 (31%), Positives = 172/353 (48%), Gaps = 45/353 (12%)
Query: 242 LQVLDLSNNDFNSTTPHWLFNIT-SLLCLDLGSNDLQGDIPDGFASLNSLQELDLSGNSF 300
+Q ++LSNN + P +F + SL L+L +N+ G IP G L+ LDLS N+
Sbjct: 95 IQTINLSNNQLSGPIPDDIFTTSSSLRYLNLSNNNFTGSIPRGSIPN--LETLDLS-NNM 151
Query: 301 LGGQLSRNLGKLCNLRTMILSRNNISSEVSDFLDGLSECTNSILLEKLELRFNQFTGILP 360
L G++ ++G +L+ + L N + ++ + L L+ LE L L NQ G +P
Sbjct: 152 LSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTS------LEFLTLASNQLVGQIP 205
Query: 361 ISLGSLKNLRHLVLWQNSFLGSIPPSIGNLTLLKELYLASNQMNGQKISDSYQHLKNQTE 420
LG +K+L+ + L N+ G IP IG LT L L L N + G I S +LKN
Sbjct: 206 RELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGP-IPSSLGNLKN--- 261
Query: 421 LRTLVLNKARISDTISDWFWQLSLTLDELDVAYNELRGRVPNSLGFNFPAKVDLSFNNFE 480
L+ L L + ++S I + L L LD++ N L G +P
Sbjct: 262 LQYLFLYQNKLSGPIPPSIFSLQ-KLISLDLSDNSLSGEIP------------------- 301
Query: 481 GRLLLWSFNVTKLYLRDNSFSGLIPNDIGQNLPFLTDLGNLKQLITLVISNNNLSGEIPL 540
L++ N+ L+L N+F+G IP L +L +L L + +N SGEIP
Sbjct: 302 -ELVIQLQNLEILHLFSNNFTGKIP----------VALTSLPRLQVLQLWSNKFSGEIPK 350
Query: 541 LFSNISFLYILDMSNNSLSGSTPESIGSLRTVKFLVLRNNYLSGKLPLSLKNC 593
+ L +LD+S N+L+G PE + S + L+L +N L G++P SL C
Sbjct: 351 NLGKHNNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSNSLEGEIPKSLGAC 403
|
Length = 968 |
| >gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional | Back alignment and domain information |
|---|
Score = 101 bits (252), Expect = 4e-22
Identities = 99/308 (32%), Positives = 143/308 (46%), Gaps = 35/308 (11%)
Query: 101 LGGEISPSLLQLKDLEYLDLSMNNFTGFQVPEFIGSLKELRYLNLSGSFFSGTIPQTLGN 160
L GEI ++QL++LE L L NNFTG ++P + SL L+ L L + FSG IP+ LG
Sbjct: 296 LSGEIPELVIQLQNLEILHLFSNNFTG-KIPVALTSLPRLQVLQLWSNKFSGEIPKNLGK 354
Query: 161 LSNLLYLDL--NNFLDQ-----------------SNQIDLEW---LSGLSSLVYFNLGGA 198
+NL LDL NN + SN ++ E L SL L
Sbjct: 355 HNNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDN 414
Query: 199 DLSKAGAYWLEVFNKLHSFVELHLPNCNLPSLPLSFPSLNFASLQVLDLSNNDFNSTTPH 258
S G E F KL L + N NL ++ + SLQ+L L+ N F P
Sbjct: 415 SFS--GELPSE-FTKLPLVYFLDISNNNL-QGRINSRKWDMPSLQMLSLARNKFFGGLPD 470
Query: 259 WLFNITSLLCLDLGSNDLQGDIPDGFASLNSLQELDLSGNSFLGGQLSRNLGKLCNLRTM 318
F L LDL N G +P SL+ L +L LS N L G++ L L ++
Sbjct: 471 -SFGSKRLENLDLSRNQFSGAVPRKLGSLSELMQLKLSENK-LSGEIPDELSSCKKLVSL 528
Query: 319 ILSRNNISSEVSDFLDGLSECTNSILLEKLELRFNQFTGILPISLGSLKNLRHLVLWQNS 378
LS N +S ++ SE +L +L+L NQ +G +P +LG++++L + + N
Sbjct: 529 DLSHNQLSGQIPA---SFSEMP---VLSQLDLSQNQLSGEIPKNLGNVESLVQVNISHNH 582
Query: 379 FLGSIPPS 386
GS+P +
Sbjct: 583 LHGSLPST 590
|
Length = 968 |
| >gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional | Back alignment and domain information |
|---|
Score = 79.9 bits (197), Expect = 1e-15
Identities = 40/119 (33%), Positives = 65/119 (54%), Gaps = 15/119 (12%)
Query: 472 VDLSFNNFEGRLLLWSFNVTKLYLRDNSFSGLIPNDIGQNLPFLTDLGNLKQLITLVISN 531
D F++ +G+ + L L + G IPNDI + L+ L ++ +S
Sbjct: 407 ADCQFDSTKGKWF-----IDGLGLDNQGLRGFIPNDISK----------LRHLQSINLSG 451
Query: 532 NNLSGEIPLLFSNISFLYILDMSNNSLSGSTPESIGSLRTVKFLVLRNNYLSGKLPLSL 590
N++ G IP +I+ L +LD+S NS +GS PES+G L +++ L L N LSG++P +L
Sbjct: 452 NSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNGNSLSGRVPAAL 510
|
Length = 623 |
| >gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional | Back alignment and domain information |
|---|
Score = 70.3 bits (172), Expect = 2e-12
Identities = 51/126 (40%), Positives = 64/126 (50%), Gaps = 14/126 (11%)
Query: 472 VDLSFNNFEGRLLLWSFN---VTKLYLRDNSFSGLIPNDIGQNLPFLTDLGNLKQLITLV 528
+DLS N G++ F + + L +N SG IP+DI F T L L
Sbjct: 74 IDLSGKNISGKISSAIFRLPYIQTINLSNNQLSGPIPDDI-----FTTS----SSLRYLN 124
Query: 529 ISNNNLSGEIPLLFSNISFLYILDMSNNSLSGSTPESIGSLRTVKFLVLRNNYLSGKLPL 588
+SNNN +G IP I L LD+SNN LSG P IGS ++K L L N L GK+P
Sbjct: 125 LSNNNFTGSIPRGS--IPNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPN 182
Query: 589 SLKNCT 594
SL N T
Sbjct: 183 SLTNLT 188
|
Length = 968 |
| >gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional | Back alignment and domain information |
|---|
Score = 69.5 bits (170), Expect = 2e-12
Identities = 55/165 (33%), Positives = 75/165 (45%), Gaps = 30/165 (18%)
Query: 35 AERKALLQFKQSLRDPSGQLS-----SWVGEDCCS----WSGVSC---NNRTASVIK-LN 81
AE K LL+ +L+ L W G+ C WSG C + + I L
Sbjct: 365 AESKTLLEEVSALQTLKSSLGLPLRFGWNGDPCVPQQHPWSGADCQFDSTKGKWFIDGLG 424
Query: 82 LNNPFRDSFGSFEDD------------AGHELGGEISPSLLQLKDLEYLDLSMNNFTGFQ 129
L+N + G +D +G+ + G I PSL + LE LDLS N+F G
Sbjct: 425 LDN--QGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNG-S 481
Query: 130 VPEFIGSLKELRYLNLSGSFFSGTIPQTLGNLSNLLYLDLNNFLD 174
+PE +G L LR LNL+G+ SG +P LG LL+ NF D
Sbjct: 482 IPESLGQLTSLRILNLNGNSLSGRVPAALGGR--LLHRASFNFTD 524
|
Length = 623 |
| >gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional | Back alignment and domain information |
|---|
Score = 67.6 bits (165), Expect = 1e-11
Identities = 60/195 (30%), Positives = 95/195 (48%), Gaps = 18/195 (9%)
Query: 417 NQTELRTLVLNKARISDTISDWFWQLSLTLDELDVAYNELRGRVPNSLGFNFPA--KVDL 474
N + + ++ L+ IS IS ++L + ++++ N+L G +P+ + + ++L
Sbjct: 67 NSSRVVSIDLSGKNISGKISSAIFRLPY-IQTINLSNNQLSGPIPDDIFTTSSSLRYLNL 125
Query: 475 SFNNFEGRLLLWS-FNVTKLYLRDNSFSGLIPNDIG--QNLPFL------------TDLG 519
S NNF G + S N+ L L +N SG IPNDIG +L L L
Sbjct: 126 SNNNFTGSIPRGSIPNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLT 185
Query: 520 NLKQLITLVISNNNLSGEIPLLFSNISFLYILDMSNNSLSGSTPESIGSLRTVKFLVLRN 579
NL L L +++N L G+IP + L + + N+LSG P IG L ++ L L
Sbjct: 186 NLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVY 245
Query: 580 NYLSGKLPLSLKNCT 594
N L+G +P SL N
Sbjct: 246 NNLTGPIPSSLGNLK 260
|
Length = 968 |
| >gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional | Back alignment and domain information |
|---|
Score = 59.1 bits (143), Expect = 4e-09
Identities = 45/141 (31%), Positives = 65/141 (46%), Gaps = 36/141 (25%)
Query: 252 FNSTTPHWLFNITSLLCLDLGSNDLQGDIPDGFASLNSLQELDLSGNSFLGGQLSRNLGK 311
F+ST W + L L + L+G IP+ + L LQ ++LSGNS + G + +LG
Sbjct: 411 FDSTKGKWFID-----GLGLDNQGLRGFIPNDISKLRHLQSINLSGNS-IRGNIPPSLG- 463
Query: 312 LCNLRTMILSRNNISSEVSDFLDGLSECTNSILLEKLELRFNQFTGILPISLGSLKNLRH 371
+I+S LE L+L +N F G +P SLG L +LR
Sbjct: 464 ------------SITS-----------------LEVLDLSYNSFNGSIPESLGQLTSLRI 494
Query: 372 LVLWQNSFLGSIPPSIGNLTL 392
L L NS G +P ++G L
Sbjct: 495 LNLNGNSLSGRVPAALGGRLL 515
|
Length = 623 |
| >gnl|CDD|219766 pfam08263, LRRNT_2, Leucine rich repeat N-terminal domain | Back alignment and domain information |
|---|
Score = 51.2 bits (123), Expect = 7e-09
Identities = 23/39 (58%), Positives = 27/39 (69%), Gaps = 3/39 (7%)
Query: 36 ERKALLQFKQSL-RDPSGQLSSWV--GEDCCSWSGVSCN 71
+R ALL FK SL DPSG LSSW D CSW+GV+C+
Sbjct: 4 DRDALLAFKSSLNGDPSGALSSWNPSSSDPCSWTGVTCD 42
|
Leucine Rich Repeats pfam00560 are short sequence motifs present in a number of proteins with diverse functions and cellular locations. Leucine Rich Repeats are often flanked by cysteine rich domains. This domain is often found at the N-terminus of tandem leucine rich repeats. Length = 42 |
| >gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional | Back alignment and domain information |
|---|
Score = 54.8 bits (132), Expect = 1e-07
Identities = 29/69 (42%), Positives = 38/69 (55%), Gaps = 1/69 (1%)
Query: 242 LQVLDLSNNDFNSTTPHWLFNITSLLCLDLGSNDLQGDIPDGFASLNSLQELDLSGNSFL 301
LQ ++LS N P L +ITSL LDL N G IP+ L SL+ L+L+GN L
Sbjct: 444 LQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNGN-SL 502
Query: 302 GGQLSRNLG 310
G++ LG
Sbjct: 503 SGRVPAALG 511
|
Length = 623 |
| >gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat | Back alignment and domain information |
|---|
Score = 47.2 bits (113), Expect = 4e-07
Identities = 24/60 (40%), Positives = 33/60 (55%)
Query: 241 SLQVLDLSNNDFNSTTPHWLFNITSLLCLDLGSNDLQGDIPDGFASLNSLQELDLSGNSF 300
+L+ LDLSNN + +L LDL N+L P+ F+ L SL+ LDLSGN+
Sbjct: 1 NLKSLDLSNNRLTVIPDGAFKGLPNLKVLDLSGNNLTSISPEAFSGLPSLRSLDLSGNNL 60
|
Length = 60 |
| >gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional | Back alignment and domain information |
|---|
Score = 51.7 bits (124), Expect = 9e-07
Identities = 28/62 (45%), Positives = 38/62 (61%)
Query: 345 LEKLELRFNQFTGILPISLGSLKNLRHLVLWQNSFLGSIPPSIGNLTLLKELYLASNQMN 404
L+ + L N G +P SLGS+ +L L L NSF GSIP S+G LT L+ L L N ++
Sbjct: 444 LQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNGNSLS 503
Query: 405 GQ 406
G+
Sbjct: 504 GR 505
|
Length = 623 |
| >gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional | Back alignment and domain information |
|---|
Score = 51.4 bits (123), Expect = 1e-06
Identities = 32/92 (34%), Positives = 50/92 (54%), Gaps = 1/92 (1%)
Query: 245 LDLSNNDFNSTTPHWLFNITSLLCLDLGSNDLQGDIPDGFASLNSLQELDLSGNSFLGGQ 304
L L N P+ + + L ++L N ++G+IP S+ SL+ LDLS NSF G
Sbjct: 423 LGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSF-NGS 481
Query: 305 LSRNLGKLCNLRTMILSRNNISSEVSDFLDGL 336
+ +LG+L +LR + L+ N++S V L G
Sbjct: 482 IPESLGQLTSLRILNLNGNSLSGRVPAALGGR 513
|
Length = 623 |
| >gnl|CDD|238064 cd00116, LRR_RI, Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily | Back alignment and domain information |
|---|
Score = 48.5 bits (116), Expect = 5e-06
Identities = 53/194 (27%), Positives = 68/194 (35%), Gaps = 24/194 (12%)
Query: 207 WLEVFNKLHSFVELHLPNCNLP--SLPLSFPSLN-FASLQVLDLSNNDFNSTT------P 257
E+ KL L L L + +L SL+ L LS N+
Sbjct: 15 ATELLPKLLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLL 74
Query: 258 HWLFNITSLLCLDLGSNDLQGDIPDGFASL---NSLQELDLSGNSFLGGQLSRNLGK--- 311
L L LDL N L D SL +SLQEL L+ N LG + R L K
Sbjct: 75 QGLTKGCGLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNG-LGDRGLRLLAKGLK 133
Query: 312 --LCNLRTMILSRNNISSEVSDFLDGLSECTNSILLEKLELRFNQFT--GI--LPISLGS 365
L ++L RN + + L L++L L N GI L L +
Sbjct: 134 DLPPALEKLVLGRNRLEGASCEALAKALRANRD--LKELNLANNGIGDAGIRALAEGLKA 191
Query: 366 LKNLRHLVLWQNSF 379
NL L L N
Sbjct: 192 NCNLEVLDLNNNGL 205
|
LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1). Length = 319 |
| >gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional | Back alignment and domain information |
|---|
Score = 47.9 bits (114), Expect = 1e-05
Identities = 40/120 (33%), Positives = 54/120 (45%), Gaps = 37/120 (30%)
Query: 357 GILPISLGSLKNLRHLVLWQNSFLGSIPPSIGNLTLLKELYLASNQMNGQKISDSYQHLK 416
G +P + L++L+ + L NS G+IPPS+G++T L+ L L+ N NG I +S L
Sbjct: 432 GFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGS-IPESLGQL- 489
Query: 417 NQTELRTLVLNKARISDTISDWFWQLSLTLDELDVAYNELRGRVPNSLG--------FNF 468
T LR L LN N L GRVP +LG FNF
Sbjct: 490 --TSLRILNLNG-------------------------NSLSGRVPAALGGRLLHRASFNF 522
|
Length = 623 |
| >gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional | Back alignment and domain information |
|---|
Score = 46.0 bits (109), Expect = 4e-05
Identities = 28/67 (41%), Positives = 37/67 (55%), Gaps = 8/67 (11%)
Query: 221 HLPNCNLP------SLPLSFPSLNFASLQVLDLSNNDFNSTTPHWLFNITSLLCLDLGSN 274
HL + NL ++P S S+ SL+VLDLS N FN + P L +TSL L+L N
Sbjct: 443 HLQSINLSGNSIRGNIPPSLGSI--TSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNGN 500
Query: 275 DLQGDIP 281
L G +P
Sbjct: 501 SLSGRVP 507
|
Length = 623 |
| >gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional | Back alignment and domain information |
|---|
Score = 44.0 bits (104), Expect = 2e-04
Identities = 30/92 (32%), Positives = 42/92 (45%), Gaps = 12/92 (13%)
Query: 495 LRDNSFSGLIPNDIGQNLPFLTDLGNLKQLITLVISNNNLSGEIPLLFSNISFLYILDMS 554
L NS G IP LG++ L L +S N+ +G IP ++ L IL+++
Sbjct: 449 LSGNSIRGNIP----------PSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLN 498
Query: 555 NNSLSGSTPESIGS--LRTVKFLVLRNNYLSG 584
NSLSG P ++G L F N L G
Sbjct: 499 GNSLSGRVPAALGGRLLHRASFNFTDNAGLCG 530
|
Length = 623 |
| >gnl|CDD|238064 cd00116, LRR_RI, Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily | Back alignment and domain information |
|---|
Score = 42.7 bits (101), Expect = 3e-04
Identities = 44/154 (28%), Positives = 61/154 (39%), Gaps = 19/154 (12%)
Query: 289 SLQELDLSGNSFLGGQLS------RNLGKLCNLRTMILSRNNISSEVSDFLDGLSECTNS 342
SL+EL LS N G + L K C L+ + LS N + + L S
Sbjct: 52 SLKELCLSLN-ETGRIPRGLQSLLQGLTKGCGLQELDLSDNALGPDGCGVL---ESLLRS 107
Query: 343 ILLEKLELRFNQF-TGILPISLGSLK----NLRHLVLWQNSFLGSIPPSIGNL----TLL 393
L++L+L N L + LK L LVL +N G+ ++ L
Sbjct: 108 SSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKALRANRDL 167
Query: 394 KELYLASNQMNGQKISDSYQHLKNQTELRTLVLN 427
KEL LA+N + I + LK L L LN
Sbjct: 168 KELNLANNGIGDAGIRALAEGLKANCNLEVLDLN 201
|
LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1). Length = 319 |
| >gnl|CDD|238064 cd00116, LRR_RI, Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily | Back alignment and domain information |
|---|
Score = 42.3 bits (100), Expect = 4e-04
Identities = 68/281 (24%), Positives = 105/281 (37%), Gaps = 48/281 (17%)
Query: 99 HELGGEISPSLLQLK-DLEYLDLSMNNFTGFQ------VPEFIGSLKELRYLNLSGSFFS 151
E + S L+ + L+ L LS+N TG + + + L+ L+LS +
Sbjct: 36 GEEAAKALASALRPQPSLKELCLSLN-ETGRIPRGLQSLLQGLTKGCGLQELDLSDNALG 94
Query: 152 GTIPQTLGNL---SNLLYLDLNNFL--DQSNQIDLEWLSGLS-SLVYFNLGGADLSKAGA 205
L +L S+L L LNN D+ ++ + L L +L LG L A
Sbjct: 95 PDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASC 154
Query: 206 Y-WLEVFNKLHSFVELHLPNCNL-----PSLPLSFPSLNFASLQVLDLSNNDFNSTTPHW 259
+ EL+L N + +L + +L+VLDL+NN
Sbjct: 155 EALAKALRANRDLKELNLANNGIGDAGIRALAEGLKA--NCNLEVLDLNNNGLT------ 206
Query: 260 LFNITSLLCLDLGSNDLQGDIPDGFASLNSLQELDLSGNSF----LGGQLSRNLGKLCNL 315
D G++ L ASL SL+ L+L N+ S L +L
Sbjct: 207 ----------DEGASALAE----TLASLKSLEVLNLGDNNLTDAGAAALASALLSPNISL 252
Query: 316 RTMILSRNNISSEVSDFLDGLSECTNSILLEKLELRFNQFT 356
T+ LS N+I D L +L+LR N+F
Sbjct: 253 LTLSLSCNDI--TDDGAKDLAEVLAEKESLLELDLRGNKFG 291
|
LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1). Length = 319 |
| >gnl|CDD|227223 COG4886, COG4886, Leucine-rich repeat (LRR) protein [Function unknown] | Back alignment and domain information |
|---|
Score = 40.3 bits (94), Expect = 0.002
Identities = 61/183 (33%), Positives = 87/183 (47%), Gaps = 12/183 (6%)
Query: 222 LPNCNLPSLPLSFPSLNFASLQVLDLSNNDFNSTTPHWLFNITSLLCLDLGSNDLQGDIP 281
L L +L LDL NN+ P ++L LDL N ++ +P
Sbjct: 98 LDLNLNRLRSNISELLELTNLTSLDLDNNNITDIPPLIGLLKSNLKELDLSDNKIE-SLP 156
Query: 282 DGFASLNSLQELDLSGNSFLGGQLSRNLGKLCNLRTMILSRNNISSEVSDFLDGLSECTN 341
+L +L+ LDLS N L + L L NL + LS N IS + ++ LS
Sbjct: 157 SPLRNLPNLKNLDLSFNDLS--DLPKLLSNLSNLNNLDLSGNKISD-LPPEIELLS---- 209
Query: 342 SILLEKLELRFNQFTGILPISLGSLKNLRHLVLWQNSFLGSIPPSIGNLTLLKELYLASN 401
LE+L+L N L SL +LKNL L L N+ L +P SIGNL+ L+ L L++N
Sbjct: 210 --ALEELDLSNNSII-ELLSSLSNLKNLSGLEL-SNNKLEDLPESIGNLSNLETLDLSNN 265
Query: 402 QMN 404
Q++
Sbjct: 266 QIS 268
|
Length = 394 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 598 | |||
| PLN00113 | 968 | leucine-rich repeat receptor-like protein kinase; | 100.0 | |
| PLN00113 | 968 | leucine-rich repeat receptor-like protein kinase; | 100.0 | |
| KOG0472 | 565 | consensus Leucine-rich repeat protein [Function un | 100.0 | |
| KOG4194 | 873 | consensus Membrane glycoprotein LIG-1 [Signal tran | 100.0 | |
| KOG4194 | 873 | consensus Membrane glycoprotein LIG-1 [Signal tran | 100.0 | |
| KOG0472 | 565 | consensus Leucine-rich repeat protein [Function un | 100.0 | |
| KOG0618 | 1081 | consensus Serine/threonine phosphatase 2C containi | 99.97 | |
| KOG0444 | 1255 | consensus Cytoskeletal regulator Flightless-I (con | 99.97 | |
| KOG0444 | 1255 | consensus Cytoskeletal regulator Flightless-I (con | 99.96 | |
| KOG0618 | 1081 | consensus Serine/threonine phosphatase 2C containi | 99.96 | |
| PLN03210 | 1153 | Resistant to P. syringae 6; Provisional | 99.91 | |
| KOG4237 | 498 | consensus Extracellular matrix protein slit, conta | 99.9 | |
| PLN03210 | 1153 | Resistant to P. syringae 6; Provisional | 99.89 | |
| PRK15387 | 788 | E3 ubiquitin-protein ligase SspH2; Provisional | 99.89 | |
| PRK15387 | 788 | E3 ubiquitin-protein ligase SspH2; Provisional | 99.88 | |
| KOG4237 | 498 | consensus Extracellular matrix protein slit, conta | 99.83 | |
| cd00116 | 319 | LRR_RI Leucine-rich repeats (LRRs), ribonuclease i | 99.8 | |
| PRK15370 | 754 | E3 ubiquitin-protein ligase SlrP; Provisional | 99.78 | |
| PRK15370 | 754 | E3 ubiquitin-protein ligase SlrP; Provisional | 99.78 | |
| cd00116 | 319 | LRR_RI Leucine-rich repeats (LRRs), ribonuclease i | 99.75 | |
| KOG0617 | 264 | consensus Ras suppressor protein (contains leucine | 99.6 | |
| KOG0617 | 264 | consensus Ras suppressor protein (contains leucine | 99.54 | |
| PLN03150 | 623 | hypothetical protein; Provisional | 99.53 | |
| KOG1909 | 382 | consensus Ran GTPase-activating protein [RNA proce | 99.24 | |
| KOG3207 | 505 | consensus Beta-tubulin folding cofactor E [Posttra | 99.22 | |
| PLN03150 | 623 | hypothetical protein; Provisional | 99.21 | |
| KOG1909 | 382 | consensus Ran GTPase-activating protein [RNA proce | 99.19 | |
| KOG3207 | 505 | consensus Beta-tubulin folding cofactor E [Posttra | 99.13 | |
| KOG0532 | 722 | consensus Leucine-rich repeat (LRR) protein, conta | 99.05 | |
| COG4886 | 394 | Leucine-rich repeat (LRR) protein [Function unknow | 99.03 | |
| KOG0532 | 722 | consensus Leucine-rich repeat (LRR) protein, conta | 99.02 | |
| PF14580 | 175 | LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ | 99.02 | |
| PF14580 | 175 | LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ | 99.01 | |
| KOG2120 | 419 | consensus SCF ubiquitin ligase, Skp2 component [Po | 98.97 | |
| COG4886 | 394 | Leucine-rich repeat (LRR) protein [Function unknow | 98.97 | |
| KOG4658 | 889 | consensus Apoptotic ATPase [Signal transduction me | 98.94 | |
| PF13855 | 61 | LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF | 98.86 | |
| KOG1259 | 490 | consensus Nischarin, modulator of integrin alpha5 | 98.86 | |
| KOG1259 | 490 | consensus Nischarin, modulator of integrin alpha5 | 98.8 | |
| KOG4658 | 889 | consensus Apoptotic ATPase [Signal transduction me | 98.72 | |
| PF13855 | 61 | LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF | 98.71 | |
| PF08263 | 43 | LRRNT_2: Leucine rich repeat N-terminal domain; In | 98.7 | |
| KOG0531 | 414 | consensus Protein phosphatase 1, regulatory subuni | 98.69 | |
| KOG2120 | 419 | consensus SCF ubiquitin ligase, Skp2 component [Po | 98.62 | |
| KOG0531 | 414 | consensus Protein phosphatase 1, regulatory subuni | 98.6 | |
| KOG4341 | 483 | consensus F-box protein containing LRR [General fu | 98.58 | |
| COG5238 | 388 | RNA1 Ran GTPase-activating protein (RanGAP) involv | 98.44 | |
| KOG4341 | 483 | consensus F-box protein containing LRR [General fu | 98.4 | |
| KOG2982 | 418 | consensus Uncharacterized conserved protein [Funct | 98.4 | |
| COG5238 | 388 | RNA1 Ran GTPase-activating protein (RanGAP) involv | 98.32 | |
| KOG1859 | 1096 | consensus Leucine-rich repeat proteins [General fu | 98.3 | |
| KOG2982 | 418 | consensus Uncharacterized conserved protein [Funct | 98.28 | |
| KOG4579 | 177 | consensus Leucine-rich repeat (LRR) protein associ | 98.21 | |
| KOG1859 | 1096 | consensus Leucine-rich repeat proteins [General fu | 98.17 | |
| PF12799 | 44 | LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_ | 98.15 | |
| PF12799 | 44 | LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_ | 98.15 | |
| KOG3665 | 699 | consensus ZYG-1-like serine/threonine protein kina | 97.96 | |
| KOG4579 | 177 | consensus Leucine-rich repeat (LRR) protein associ | 97.93 | |
| PRK15386 | 426 | type III secretion protein GogB; Provisional | 97.8 | |
| KOG3665 | 699 | consensus ZYG-1-like serine/threonine protein kina | 97.77 | |
| KOG1644 | 233 | consensus U2-associated snRNP A' protein [RNA proc | 97.77 | |
| PRK15386 | 426 | type III secretion protein GogB; Provisional | 97.7 | |
| KOG2739 | 260 | consensus Leucine-rich acidic nuclear protein [Cel | 97.59 | |
| KOG1644 | 233 | consensus U2-associated snRNP A' protein [RNA proc | 97.46 | |
| KOG1947 | 482 | consensus Leucine rich repeat proteins, some prote | 97.13 | |
| KOG4308 | 478 | consensus LRR-containing protein [Function unknown | 96.8 | |
| PF13306 | 129 | LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_ | 96.79 | |
| KOG2739 | 260 | consensus Leucine-rich acidic nuclear protein [Cel | 96.74 | |
| PF13306 | 129 | LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_ | 96.62 | |
| KOG1947 | 482 | consensus Leucine rich repeat proteins, some prote | 96.62 | |
| KOG2123 | 388 | consensus Uncharacterized conserved protein [Funct | 96.52 | |
| PF00560 | 22 | LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Le | 96.35 | |
| KOG4308 | 478 | consensus LRR-containing protein [Function unknown | 96.31 | |
| KOG2123 | 388 | consensus Uncharacterized conserved protein [Funct | 96.29 | |
| PF00560 | 22 | LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Le | 96.17 | |
| PF13504 | 17 | LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OO | 93.97 | |
| KOG3864 | 221 | consensus Uncharacterized conserved protein [Funct | 93.09 | |
| PF13504 | 17 | LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OO | 93.07 | |
| KOG3864 | 221 | consensus Uncharacterized conserved protein [Funct | 92.4 | |
| KOG0473 | 326 | consensus Leucine-rich repeat protein [Function un | 92.1 | |
| KOG4242 | 553 | consensus Predicted myosin-I-binding protein [Cell | 91.21 | |
| PF13516 | 24 | LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RI | 90.17 | |
| smart00369 | 26 | LRR_TYP Leucine-rich repeats, typical (most popula | 89.96 | |
| smart00370 | 26 | LRR Leucine-rich repeats, outliers. | 89.96 | |
| KOG0473 | 326 | consensus Leucine-rich repeat protein [Function un | 89.57 | |
| smart00369 | 26 | LRR_TYP Leucine-rich repeats, typical (most popula | 88.69 | |
| smart00370 | 26 | LRR Leucine-rich repeats, outliers. | 88.69 | |
| smart00364 | 26 | LRR_BAC Leucine-rich repeats, bacterial type. | 80.68 |
| >PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7e-63 Score=564.08 Aligned_cols=519 Identities=33% Similarity=0.474 Sum_probs=286.1
Q ss_pred CHHHHHHHHHHHhcCCCCCCCCCCC-CCCCCCCcccEEecCCCCcEEEEEcCCCCCCCCCCcccCCCCCcceecCccccC
Q 037325 33 QEAERKALLQFKQSLRDPSGQLSSW-VGEDCCSWSGVSCNNRTASVIKLNLNNPFRDSFGSFEDDAGHELGGEISPSLLQ 111 (598)
Q Consensus 33 ~~~~~~~l~~~~~~~~~~~~~~~~W-~~~~~c~w~gv~c~~~~~~v~~L~L~~~~~~~~~~~~~~~~~~l~~~~~~~l~~ 111 (598)
.++|++||++||+++.+|.+.+.+| .+.+||.|.||+|++ .++|+.|||++ +++.|.++..+..
T Consensus 27 ~~~~~~~l~~~~~~~~~~~~~~~~w~~~~~~c~w~gv~c~~-~~~v~~L~L~~--------------~~i~~~~~~~~~~ 91 (968)
T PLN00113 27 HAEELELLLSFKSSINDPLKYLSNWNSSADVCLWQGITCNN-SSRVVSIDLSG--------------KNISGKISSAIFR 91 (968)
T ss_pred CHHHHHHHHHHHHhCCCCcccCCCCCCCCCCCcCcceecCC-CCcEEEEEecC--------------CCccccCChHHhC
Confidence 5689999999999998887788999 567999999999985 57999999998 4555555555555
Q ss_pred CCCCCEEeCCCCCCCCCCcchhc-cCCCCCCEEECcCCCCCcc----------------------cchhccCCCCCCEEE
Q 037325 112 LKDLEYLDLSMNNFTGFQVPEFI-GSLKELRYLNLSGSFFSGT----------------------IPQTLGNLSNLLYLD 168 (598)
Q Consensus 112 l~~L~~L~Ls~n~l~~~~~p~~~-~~l~~L~~L~L~~n~l~~~----------------------~p~~l~~l~~L~~L~ 168 (598)
+++|++|+|++|++.+. +|..+ ..+++|++|++++|++++. +|..++++++|++|+
T Consensus 92 l~~L~~L~Ls~n~~~~~-ip~~~~~~l~~L~~L~Ls~n~l~~~~p~~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~ 170 (968)
T PLN00113 92 LPYIQTINLSNNQLSGP-IPDDIFTTSSSLRYLNLSNNNFTGSIPRGSIPNLETLDLSNNMLSGEIPNDIGSFSSLKVLD 170 (968)
T ss_pred CCCCCEEECCCCccCCc-CChHHhccCCCCCEEECcCCccccccCccccCCCCEEECcCCcccccCChHHhcCCCCCEEE
Confidence 66666666666655543 44433 2555555555555555544 444444444444444
Q ss_pred ccCCCCCCCccChhhhcCCCCCcEEEcCCCCCCCCcccchHhhhcCCCCCEEEcCCCCCCCCCCCCCcCCCCCccEEEcc
Q 037325 169 LNNFLDQSNQIDLEWLSGLSSLVYFNLGGADLSKAGAYWLEVFNKLHSFVELHLPNCNLPSLPLSFPSLNFASLQVLDLS 248 (598)
Q Consensus 169 L~~n~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~L~~L~L~ 248 (598)
+++|.+.... ...+.++++|++|++++|.+.+.. +..+.++++|++|++++|.+.+..+ ..+..+++|++|+++
T Consensus 171 L~~n~l~~~~--p~~~~~l~~L~~L~L~~n~l~~~~---p~~l~~l~~L~~L~L~~n~l~~~~p-~~l~~l~~L~~L~L~ 244 (968)
T PLN00113 171 LGGNVLVGKI--PNSLTNLTSLEFLTLASNQLVGQI---PRELGQMKSLKWIYLGYNNLSGEIP-YEIGGLTSLNHLDLV 244 (968)
T ss_pred CccCcccccC--ChhhhhCcCCCeeeccCCCCcCcC---ChHHcCcCCccEEECcCCccCCcCC-hhHhcCCCCCEEECc
Confidence 4444332111 112344444555555444444332 3444445555555555554444333 333444555555555
Q ss_pred CCCCCCCcchhhhcCCCCCEEEccCCcccccCCccccCCCCccEEECcCCCcCccccchhhcCCCCCCEEecccccCCcc
Q 037325 249 NNDFNSTTPHWLFNITSLLCLDLGSNDLQGDIPDGFASLNSLQELDLSGNSFLGGQLSRNLGKLCNLRTMILSRNNISSE 328 (598)
Q Consensus 249 ~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~ 328 (598)
+|.+++..|..+.++++|++|++++|.+.+.+|..+..+++|++|++++|. +.+.+|..+..+++|+.|++++|.+.+.
T Consensus 245 ~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~-l~~~~p~~~~~l~~L~~L~l~~n~~~~~ 323 (968)
T PLN00113 245 YNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNS-LSGEIPELVIQLQNLEILHLFSNNFTGK 323 (968)
T ss_pred CceeccccChhHhCCCCCCEEECcCCeeeccCchhHhhccCcCEEECcCCe-eccCCChhHcCCCCCcEEECCCCccCCc
Confidence 555554555555555555555555555554455445555555555555554 3444455555555555555555555555
Q ss_pred cchhhhCCCCCCCCCCccEEEccCccccccCccccCCCCCCCEEEccCCcCCccchhhccCCCCCCEEeCcCCcCCcccC
Q 037325 329 VSDFLDGLSECTNSILLEKLELRFNQFTGILPISLGSLKNLRHLVLWQNSFLGSIPPSIGNLTLLKELYLASNQMNGQKI 408 (598)
Q Consensus 329 ~~~~~~~l~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~ls~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~ 408 (598)
.|..+..++ +|+.|++++|.+.+.+|..++.+++|+.|++++|++.+.+|..+..+++|+.|++++|.+.+..
T Consensus 324 ~~~~~~~l~------~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~- 396 (968)
T PLN00113 324 IPVALTSLP------RLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSNSLEGEI- 396 (968)
T ss_pred CChhHhcCC------CCCEEECcCCCCcCcCChHHhCCCCCcEEECCCCeeEeeCChhHhCcCCCCEEECcCCEecccC-
Confidence 554444444 5555555555555555555555555555666555555555555555555555555555554443
Q ss_pred CCchhhhcCCCCCCEEEccCccCccccchHHHhcCCCCCEEEccCCcCcccCCCCcccC-CCCEEEcccCcCcccCCCC-
Q 037325 409 SDSYQHLKNQTELRTLVLNKARISDTISDWFWQLSLTLDELDVAYNELRGRVPNSLGFN-FPAKVDLSFNNFEGRLLLW- 486 (598)
Q Consensus 409 ~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~ls~n~~~~~~p~~~~~~-~L~~l~ls~n~l~~~~~~~- 486 (598)
| ..+..+++|+.|++++|++++..|..+.. ++.|+.+++++|.+++.+|..+... .|+.+++++|++.+.+|..
T Consensus 397 p---~~~~~~~~L~~L~L~~n~l~~~~p~~~~~-l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~p~~~ 472 (968)
T PLN00113 397 P---KSLGACRSLRRVRLQDNSFSGELPSEFTK-LPLVYFLDISNNNLQGRINSRKWDMPSLQMLSLARNKFFGGLPDSF 472 (968)
T ss_pred C---HHHhCCCCCCEEECcCCEeeeECChhHhc-CCCCCEEECcCCcccCccChhhccCCCCcEEECcCceeeeecCccc
Confidence 2 23455666666666666666666655544 5566666666666666555544333 5555666666555555543
Q ss_pred -CcCCcEEEccCCcccccCCchhhcccCCCCCccccCCCCeEeCcCCccccccchhccCCCCCCEEECCCCcCccccchh
Q 037325 487 -SFNVTKLYLRDNSFSGLIPNDIGQNLPFLTDLGNLKQLITLVISNNNLSGEIPLLFSNISFLYILDMSNNSLSGSTPES 565 (598)
Q Consensus 487 -~~~L~~L~ls~n~l~~~~p~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~ 565 (598)
.++|+.||+++|++++.+|..+.. +++|+.|+|++|.+++.+|..++++++|++|+|++|+++|.+|..
T Consensus 473 ~~~~L~~L~ls~n~l~~~~~~~~~~----------l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~ 542 (968)
T PLN00113 473 GSKRLENLDLSRNQFSGAVPRKLGS----------LSELMQLKLSENKLSGEIPDELSSCKKLVSLDLSHNQLSGQIPAS 542 (968)
T ss_pred ccccceEEECcCCccCCccChhhhh----------hhccCEEECcCCcceeeCChHHcCccCCCEEECCCCcccccCChh
Confidence 245556666666665555555444 444444444444444444444444444444444444444444444
Q ss_pred ccCCCCCCEEEccCCCCcccCCcCccCcCC
Q 037325 566 IGSLRTVKFLVLRNNYLSGKLPLSLKNCTF 595 (598)
Q Consensus 566 l~~l~~L~~L~l~~n~l~g~~P~~~~~~~~ 595 (598)
+.++++|++|++++|+++|.+|..+.++++
T Consensus 543 ~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~ 572 (968)
T PLN00113 543 FSEMPVLSQLDLSQNQLSGEIPKNLGNVES 572 (968)
T ss_pred HhCcccCCEEECCCCcccccCChhHhcCcc
Confidence 444444444444444444444444444433
|
|
| >PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-54 Score=493.58 Aligned_cols=507 Identities=31% Similarity=0.444 Sum_probs=447.1
Q ss_pred CCCCCCCCCCCCCcccEEe---cC------------CCCcEEEEEcCCCCCCC-C----------CCcccCCCCCcceec
Q 037325 52 GQLSSWVGEDCCSWSGVSC---NN------------RTASVIKLNLNNPFRDS-F----------GSFEDDAGHELGGEI 105 (598)
Q Consensus 52 ~~~~~W~~~~~c~w~gv~c---~~------------~~~~v~~L~L~~~~~~~-~----------~~~~~~~~~~l~~~~ 105 (598)
..++.|.|..|-.-..|+- .+ .-.+++.|+|+++...+ . .+..++..+++++.+
T Consensus 55 ~~~c~w~gv~c~~~~~v~~L~L~~~~i~~~~~~~~~~l~~L~~L~Ls~n~~~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~ 134 (968)
T PLN00113 55 ADVCLWQGITCNNSSRVVSIDLSGKNISGKISSAIFRLPYIQTINLSNNQLSGPIPDDIFTTSSSLRYLNLSNNNFTGSI 134 (968)
T ss_pred CCCCcCcceecCCCCcEEEEEecCCCccccCChHHhCCCCCCEEECCCCccCCcCChHHhccCCCCCEEECcCCcccccc
Confidence 3578998877642122221 10 12367888998754321 1 223445567777776
Q ss_pred CccccCCCCCCEEeCCCCCCCCCCcchhccCCCCCCEEECcCCCCCcccchhccCCCCCCEEEccCCCCCCCccChhhhc
Q 037325 106 SPSLLQLKDLEYLDLSMNNFTGFQVPEFIGSLKELRYLNLSGSFFSGTIPQTLGNLSNLLYLDLNNFLDQSNQIDLEWLS 185 (598)
Q Consensus 106 ~~~l~~l~~L~~L~Ls~n~l~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~ 185 (598)
|. ..+++|++|+|++|.+.+. +|..++++++|++|++++|.+.+.+|..++++++|++|++++|.+... ....+.
T Consensus 135 p~--~~l~~L~~L~Ls~n~~~~~-~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~--~p~~l~ 209 (968)
T PLN00113 135 PR--GSIPNLETLDLSNNMLSGE-IPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQ--IPRELG 209 (968)
T ss_pred Cc--cccCCCCEEECcCCccccc-CChHHhcCCCCCEEECccCcccccCChhhhhCcCCCeeeccCCCCcCc--CChHHc
Confidence 64 4578888889988888875 899999999999999999999999999999999999999999876433 234588
Q ss_pred CCCCCcEEEcCCCCCCCCcccchHhhhcCCCCCEEEcCCCCCCCCCCCCCcCCCCCccEEEccCCCCCCCcchhhhcCCC
Q 037325 186 GLSSLVYFNLGGADLSKAGAYWLEVFNKLHSFVELHLPNCNLPSLPLSFPSLNFASLQVLDLSNNDFNSTTPHWLFNITS 265 (598)
Q Consensus 186 ~l~~L~~L~l~~n~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~ 265 (598)
++++|++|++++|.+.+.. +..+..+++|++|++++|.+++..+ ..+.++++|++|++++|++.+..|..+.++++
T Consensus 210 ~l~~L~~L~L~~n~l~~~~---p~~l~~l~~L~~L~L~~n~l~~~~p-~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~ 285 (968)
T PLN00113 210 QMKSLKWIYLGYNNLSGEI---PYEIGGLTSLNHLDLVYNNLTGPIP-SSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQK 285 (968)
T ss_pred CcCCccEEECcCCccCCcC---ChhHhcCCCCCEEECcCceeccccC-hhHhCCCCCCEEECcCCeeeccCchhHhhccC
Confidence 9999999999999998765 6789999999999999999987766 56788999999999999999999999999999
Q ss_pred CCEEEccCCcccccCCccccCCCCccEEECcCCCcCccccchhhcCCCCCCEEecccccCCcccchhhhCCCCCCCCCCc
Q 037325 266 LLCLDLGSNDLQGDIPDGFASLNSLQELDLSGNSFLGGQLSRNLGKLCNLRTMILSRNNISSEVSDFLDGLSECTNSILL 345 (598)
Q Consensus 266 L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~~~~~~~L 345 (598)
|+.|++++|.+.+.+|..+..+++|+.|++++|. +.+..|..+..+++|+.|++++|.+.+..|..+..+. +|
T Consensus 286 L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~n~-~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~~~------~L 358 (968)
T PLN00113 286 LISLDLSDNSLSGEIPELVIQLQNLEILHLFSNN-FTGKIPVALTSLPRLQVLQLWSNKFSGEIPKNLGKHN------NL 358 (968)
T ss_pred cCEEECcCCeeccCCChhHcCCCCCcEEECCCCc-cCCcCChhHhcCCCCCEEECcCCCCcCcCChHHhCCC------CC
Confidence 9999999999999999999999999999999999 6778899999999999999999999999998888877 89
Q ss_pred cEEEccCccccccCccccCCCCCCCEEEccCCcCCccchhhccCCCCCCEEeCcCCcCCcccCCCchhhhcCCCCCCEEE
Q 037325 346 EKLELRFNQFTGILPISLGSLKNLRHLVLWQNSFLGSIPPSIGNLTLLKELYLASNQMNGQKISDSYQHLKNQTELRTLV 425 (598)
Q Consensus 346 ~~L~Ls~n~l~~~~~~~l~~l~~L~~L~ls~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~~~~L~~L~ 425 (598)
+.|++++|++.+.+|..+..+++|+.|++++|.+.+.+|..+..+++|+.|++++|.+++.. |. .+..++.|+.|+
T Consensus 359 ~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~L~~L~L~~n~l~~~~-p~---~~~~l~~L~~L~ 434 (968)
T PLN00113 359 TVLDLSTNNLTGEIPEGLCSSGNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNSFSGEL-PS---EFTKLPLVYFLD 434 (968)
T ss_pred cEEECCCCeeEeeCChhHhCcCCCCEEECcCCEecccCCHHHhCCCCCCEEECcCCEeeeEC-Ch---hHhcCCCCCEEE
Confidence 99999999999999999999999999999999999999999999999999999999999876 53 467889999999
Q ss_pred ccCccCccccchHHHhcCCCCCEEEccCCcCcccCCCCcccCCCCEEEcccCcCcccCCCC---CcCCcEEEccCCcccc
Q 037325 426 LNKARISDTISDWFWQLSLTLDELDVAYNELRGRVPNSLGFNFPAKVDLSFNNFEGRLLLW---SFNVTKLYLRDNSFSG 502 (598)
Q Consensus 426 l~~n~l~~~~~~~~~~~~~~L~~L~ls~n~~~~~~p~~~~~~~L~~l~ls~n~l~~~~~~~---~~~L~~L~ls~n~l~~ 502 (598)
+++|++++.++..++. +++|++|++++|++.+.+|..+....++.|++++|++.+.+|.. +++|+.|++++|++++
T Consensus 435 Ls~N~l~~~~~~~~~~-l~~L~~L~L~~n~~~~~~p~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~ 513 (968)
T PLN00113 435 ISNNNLQGRINSRKWD-MPSLQMLSLARNKFFGGLPDSFGSKRLENLDLSRNQFSGAVPRKLGSLSELMQLKLSENKLSG 513 (968)
T ss_pred CcCCcccCccChhhcc-CCCCcEEECcCceeeeecCcccccccceEEECcCCccCCccChhhhhhhccCEEECcCCccee
Confidence 9999999998887776 78999999999999999998887779999999999999988875 5789999999999999
Q ss_pred cCCchhhcccCCCCCccccCCCCeEeCcCCccccccchhccCCCCCCEEECCCCcCccccchhccCCCCCCEEEccCCCC
Q 037325 503 LIPNDIGQNLPFLTDLGNLKQLITLVISNNNLSGEIPLLFSNISFLYILDMSNNSLSGSTPESIGSLRTVKFLVLRNNYL 582 (598)
Q Consensus 503 ~~p~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~l~~l~~L~~L~l~~n~l 582 (598)
.+|..+.. +++|++|+|++|.++|.+|..++++++|+.|++++|+++|.+|..+.++++|+++++++|++
T Consensus 514 ~~p~~~~~----------l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l~ls~N~l 583 (968)
T PLN00113 514 EIPDELSS----------CKKLVSLDLSHNQLSGQIPASFSEMPVLSQLDLSQNQLSGEIPKNLGNVESLVQVNISHNHL 583 (968)
T ss_pred eCChHHcC----------ccCCCEEECCCCcccccCChhHhCcccCCEEECCCCcccccCChhHhcCcccCEEeccCCcc
Confidence 99998887 89999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCCcC
Q 037325 583 SGKLPLS 589 (598)
Q Consensus 583 ~g~~P~~ 589 (598)
+|.+|..
T Consensus 584 ~~~~p~~ 590 (968)
T PLN00113 584 HGSLPST 590 (968)
T ss_pred eeeCCCc
Confidence 9999964
|
|
| >KOG0472 consensus Leucine-rich repeat protein [Function unknown] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-40 Score=308.49 Aligned_cols=454 Identities=26% Similarity=0.319 Sum_probs=294.6
Q ss_pred CcEEEEEcCCCCCCCCCCcccCCCCCcceecCccccCCCCCCEEeCCCCCCCCCCcchhccCCCCCCEEECcCCCCCccc
Q 037325 75 ASVIKLNLNNPFRDSFGSFEDDAGHELGGEISPSLLQLKDLEYLDLSMNNFTGFQVPEFIGSLKELRYLNLSGSFFSGTI 154 (598)
Q Consensus 75 ~~v~~L~L~~~~~~~~~~~~~~~~~~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~p~~~~~l~~L~~L~L~~n~l~~~~ 154 (598)
.....+++++ |.+. .+.+.+.++..|.+|++.+|++. ++|.+++.+..++.|++++|+++ .+
T Consensus 45 v~l~~lils~--------------N~l~-~l~~dl~nL~~l~vl~~~~n~l~--~lp~aig~l~~l~~l~vs~n~ls-~l 106 (565)
T KOG0472|consen 45 VDLQKLILSH--------------NDLE-VLREDLKNLACLTVLNVHDNKLS--QLPAAIGELEALKSLNVSHNKLS-EL 106 (565)
T ss_pred cchhhhhhcc--------------Cchh-hccHhhhcccceeEEEeccchhh--hCCHHHHHHHHHHHhhcccchHh-hc
Confidence 3567777776 4544 34456788999999999999998 78999999999999999999998 88
Q ss_pred chhccCCCCCCEEEccCCCCCCCccChhhhcCCCCCcEEEcCCCCCCCCcccchHhhhcCCCCCEEEcCCCCCCCCCCCC
Q 037325 155 PQTLGNLSNLLYLDLNNFLDQSNQIDLEWLSGLSSLVYFNLGGADLSKAGAYWLEVFNKLHSFVELHLPNCNLPSLPLSF 234 (598)
Q Consensus 155 p~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~ 234 (598)
|..++.+.+|+++++++|.+..... .++.+-.++.++..+|++... ++.+..+.+|..+++.+|.++..++.
T Consensus 107 p~~i~s~~~l~~l~~s~n~~~el~~---~i~~~~~l~dl~~~~N~i~sl----p~~~~~~~~l~~l~~~~n~l~~l~~~- 178 (565)
T KOG0472|consen 107 PEQIGSLISLVKLDCSSNELKELPD---SIGRLLDLEDLDATNNQISSL----PEDMVNLSKLSKLDLEGNKLKALPEN- 178 (565)
T ss_pred cHHHhhhhhhhhhhccccceeecCc---hHHHHhhhhhhhccccccccC----chHHHHHHHHHHhhccccchhhCCHH-
Confidence 9999999999999998876643333 266677788888888888777 57777888888888888888887763
Q ss_pred CcCCCCCccEEEccCCCCCCCcchhhhcCCCCCEEEccCCcccccCCccccCCCCccEEECcCCCcCccccch-hhcCCC
Q 037325 235 PSLNFASLQVLDLSNNDFNSTTPHWLFNITSLLCLDLGSNDLQGDIPDGFASLNSLQELDLSGNSFLGGQLSR-NLGKLC 313 (598)
Q Consensus 235 ~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~-~l~~l~ 313 (598)
.+ +++.|+.||...|.+. .+|+.++.+.+|..|++..|++. .+| .|..+..|++|++..|.+ ..+|. ...+++
T Consensus 179 ~i-~m~~L~~ld~~~N~L~-tlP~~lg~l~~L~~LyL~~Nki~-~lP-ef~gcs~L~Elh~g~N~i--~~lpae~~~~L~ 252 (565)
T KOG0472|consen 179 HI-AMKRLKHLDCNSNLLE-TLPPELGGLESLELLYLRRNKIR-FLP-EFPGCSLLKELHVGENQI--EMLPAEHLKHLN 252 (565)
T ss_pred HH-HHHHHHhcccchhhhh-cCChhhcchhhhHHHHhhhcccc-cCC-CCCccHHHHHHHhcccHH--HhhHHHHhcccc
Confidence 22 3778888888877765 57777888888888888888887 556 677888888888888873 34444 444788
Q ss_pred CCCEEecccccCCcccchhhhCCCCCCCCCCccEEEccCccccccCccccCCCCCCCEEEccCCcCCccchhhccCCC--
Q 037325 314 NLRTMILSRNNISSEVSDFLDGLSECTNSILLEKLELRFNQFTGILPISLGSLKNLRHLVLWQNSFLGSIPPSIGNLT-- 391 (598)
Q Consensus 314 ~L~~L~l~~n~l~~~~~~~~~~l~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~ls~n~l~~~~~~~l~~l~-- 391 (598)
++..|++++|++.. .|+.+..+. +|++||+++|.+++ +|..++++ .|+.|.+.+|.+...--+.+..-+
T Consensus 253 ~l~vLDLRdNklke-~Pde~clLr------sL~rLDlSNN~is~-Lp~sLgnl-hL~~L~leGNPlrTiRr~ii~~gT~~ 323 (565)
T KOG0472|consen 253 SLLVLDLRDNKLKE-VPDEICLLR------SLERLDLSNNDISS-LPYSLGNL-HLKFLALEGNPLRTIRREIISKGTQE 323 (565)
T ss_pred cceeeecccccccc-CchHHHHhh------hhhhhcccCCcccc-CCcccccc-eeeehhhcCCchHHHHHHHHcccHHH
Confidence 88888888888774 344444454 68888888888874 66678888 788888888876521111111000
Q ss_pred CCCEEe-------CcCC---cC-CcccCCCchhhhcCCCCCCEEEccCccCccccchHHHhcCC--CCCEEEccCCcCcc
Q 037325 392 LLKELY-------LASN---QM-NGQKISDSYQHLKNQTELRTLVLNKARISDTISDWFWQLSL--TLDELDVAYNELRG 458 (598)
Q Consensus 392 ~L~~L~-------l~~n---~l-~~~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~--~L~~L~ls~n~~~~ 458 (598)
-|++|. ++.. .. ++...+..+.......+.+.|++++-+++.. |..+|.... -.+.++++.|++.
T Consensus 324 vLKyLrs~~~~dglS~se~~~e~~~t~~~~~~~~~~~~i~tkiL~~s~~qlt~V-PdEVfea~~~~~Vt~VnfskNqL~- 401 (565)
T KOG0472|consen 324 VLKYLRSKIKDDGLSQSEGGTETAMTLPSESFPDIYAIITTKILDVSDKQLTLV-PDEVFEAAKSEIVTSVNFSKNQLC- 401 (565)
T ss_pred HHHHHHHhhccCCCCCCcccccccCCCCCCcccchhhhhhhhhhcccccccccC-CHHHHHHhhhcceEEEecccchHh-
Confidence 011110 1110 00 0111122233344455677777777777643 443433221 2566777777775
Q ss_pred cCCCCcccC--CCCEEEcccCcCc--ccCCCCCcCCcEEEccCCcccccCCchhhcccCCCCCccccCCCCeEeCcCCcc
Q 037325 459 RVPNSLGFN--FPAKVDLSFNNFE--GRLLLWSFNVTKLYLRDNSFSGLIPNDIGQNLPFLTDLGNLKQLITLVISNNNL 534 (598)
Q Consensus 459 ~~p~~~~~~--~L~~l~ls~n~l~--~~~~~~~~~L~~L~ls~n~l~~~~p~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l 534 (598)
.+|+.+... .++.+++++|.+. +.+-..+++|..|++++|-+. .+|.+++. +..|+.||+|.|.|
T Consensus 402 elPk~L~~lkelvT~l~lsnn~isfv~~~l~~l~kLt~L~L~NN~Ln-~LP~e~~~----------lv~Lq~LnlS~NrF 470 (565)
T KOG0472|consen 402 ELPKRLVELKELVTDLVLSNNKISFVPLELSQLQKLTFLDLSNNLLN-DLPEEMGS----------LVRLQTLNLSFNRF 470 (565)
T ss_pred hhhhhhHHHHHHHHHHHhhcCccccchHHHHhhhcceeeecccchhh-hcchhhhh----------hhhhheeccccccc
Confidence 455544332 3333444444432 122223455555555555554 45555554 44555555555555
Q ss_pred c-----------------------cccchhccCCCCCCEEECCCCcCccccchhccCCCCCCEEEccCCCCc
Q 037325 535 S-----------------------GEIPLLFSNISFLYILDMSNNSLSGSTPESIGSLRTVKFLVLRNNYLS 583 (598)
Q Consensus 535 ~-----------------------~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~l~~l~~L~~L~l~~n~l~ 583 (598)
. ..-|..+.+|.+|..||+.+|.+. .+|..++++++|++|++.||++.
T Consensus 471 r~lP~~~y~lq~lEtllas~nqi~~vd~~~l~nm~nL~tLDL~nNdlq-~IPp~LgnmtnL~hLeL~gNpfr 541 (565)
T KOG0472|consen 471 RMLPECLYELQTLETLLASNNQIGSVDPSGLKNMRNLTTLDLQNNDLQ-QIPPILGNMTNLRHLELDGNPFR 541 (565)
T ss_pred ccchHHHhhHHHHHHHHhccccccccChHHhhhhhhcceeccCCCchh-hCChhhccccceeEEEecCCccC
Confidence 4 223333666677777777777776 66777777777777777777776
|
|
| >KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.7e-35 Score=285.05 Aligned_cols=370 Identities=25% Similarity=0.249 Sum_probs=251.6
Q ss_pred CCCCEEeCCCCCCCCCCcchhccCCCCCCEEECcCCCCCcccchhccCCCCCCEEEccCCCCCCCccChhhhcCCCCCcE
Q 037325 113 KDLEYLDLSMNNFTGFQVPEFIGSLKELRYLNLSGSFFSGTIPQTLGNLSNLLYLDLNNFLDQSNQIDLEWLSGLSSLVY 192 (598)
Q Consensus 113 ~~L~~L~Ls~n~l~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~~l~~L~~ 192 (598)
+.-+.||+++|.++.+ -+.+|.++++|+.+++.+|.++ .+|...+...+|+.|+|.+|.+
T Consensus 78 ~~t~~LdlsnNkl~~i-d~~~f~nl~nLq~v~l~~N~Lt-~IP~f~~~sghl~~L~L~~N~I------------------ 137 (873)
T KOG4194|consen 78 SQTQTLDLSNNKLSHI-DFEFFYNLPNLQEVNLNKNELT-RIPRFGHESGHLEKLDLRHNLI------------------ 137 (873)
T ss_pred cceeeeeccccccccC-cHHHHhcCCcceeeeeccchhh-hcccccccccceeEEeeecccc------------------
Confidence 3556799999999877 6778899999999999999998 8888666666677777776544
Q ss_pred EEcCCCCCCCCcccchHhhhcCCCCCEEEcCCCCCCCCCCCCCcCCCCCccEEEccCCCCCCCcchhhhcCCCCCEEEcc
Q 037325 193 FNLGGADLSKAGAYWLEVFNKLHSFVELHLPNCNLPSLPLSFPSLNFASLQVLDLSNNDFNSTTPHWLFNITSLLCLDLG 272 (598)
Q Consensus 193 L~l~~n~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~ 272 (598)
+.+. .+.+..++.|+.|+++.|.++.++. ..+..-.++++|+|++|+++..-...|..+.+|..|.++
T Consensus 138 --------~sv~---se~L~~l~alrslDLSrN~is~i~~-~sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLs 205 (873)
T KOG4194|consen 138 --------SSVT---SEELSALPALRSLDLSRNLISEIPK-PSFPAKVNIKKLNLASNRITTLETGHFDSLNSLLTLKLS 205 (873)
T ss_pred --------cccc---HHHHHhHhhhhhhhhhhchhhcccC-CCCCCCCCceEEeeccccccccccccccccchheeeecc
Confidence 3322 3455566666666666666666655 444455677777777777776666667777777777777
Q ss_pred CCcccccCCccccCCCCccEEECcCCCcCccccchhhcCCCCCCEEecccccCCcccchhhhCCCCCCCCCCccEEEccC
Q 037325 273 SNDLQGDIPDGFASLNSLQELDLSGNSFLGGQLSRNLGKLCNLRTMILSRNNISSEVSDFLDGLSECTNSILLEKLELRF 352 (598)
Q Consensus 273 ~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~~~~~~~L~~L~Ls~ 352 (598)
+|+++...+..|.++++|+.|+|..|.+ ...---.|.++++|+.|.+.+|++.......|..+. ++++|+|..
T Consensus 206 rNrittLp~r~Fk~L~~L~~LdLnrN~i-rive~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~------kme~l~L~~ 278 (873)
T KOG4194|consen 206 RNRITTLPQRSFKRLPKLESLDLNRNRI-RIVEGLTFQGLPSLQNLKLQRNDISKLDDGAFYGLE------KMEHLNLET 278 (873)
T ss_pred cCcccccCHHHhhhcchhhhhhccccce-eeehhhhhcCchhhhhhhhhhcCcccccCcceeeec------ccceeeccc
Confidence 7777744445566677777777777763 222234566777777777777777766666666666 678888888
Q ss_pred ccccccCccccCCCCCCCEEEccCCcCCccchhhccCCCCCCEEeCcCCcCCcccCCCchhhhcCCCCCCEEEccCccCc
Q 037325 353 NQFTGILPISLGSLKNLRHLVLWQNSFLGSIPPSIGNLTLLKELYLASNQMNGQKISDSYQHLKNQTELRTLVLNKARIS 432 (598)
Q Consensus 353 n~l~~~~~~~l~~l~~L~~L~ls~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~~~~L~~L~l~~n~l~ 432 (598)
|+++..-..++.++++|+.|++++|.+...-++.+...++|++|++++|+++... +. .+..+..|++|.+++|+++
T Consensus 279 N~l~~vn~g~lfgLt~L~~L~lS~NaI~rih~d~WsftqkL~~LdLs~N~i~~l~-~~---sf~~L~~Le~LnLs~Nsi~ 354 (873)
T KOG4194|consen 279 NRLQAVNEGWLFGLTSLEQLDLSYNAIQRIHIDSWSFTQKLKELDLSSNRITRLD-EG---SFRVLSQLEELNLSHNSID 354 (873)
T ss_pred chhhhhhcccccccchhhhhccchhhhheeecchhhhcccceeEeccccccccCC-hh---HHHHHHHhhhhcccccchH
Confidence 8777666667777788888888888777666777777788888888888777554 32 3455566777777777776
Q ss_pred cccchHHHhcCCCCCEEEccCCcCcccCCCCcccCCCCEEEcccCcCcccCCCCCcCCcEEEccCCcccccCCchhhccc
Q 037325 433 DTISDWFWQLSLTLDELDVAYNELRGRVPNSLGFNFPAKVDLSFNNFEGRLLLWSFNVTKLYLRDNSFSGLIPNDIGQNL 512 (598)
Q Consensus 433 ~~~~~~~~~~~~~L~~L~ls~n~~~~~~p~~~~~~~L~~l~ls~n~l~~~~~~~~~~L~~L~ls~n~l~~~~p~~~~~~~ 512 (598)
..-...| ..+.+|++|||+.|.+...+.+.-. .+..+++|+.|++.+|++. .||..-
T Consensus 355 ~l~e~af-~~lssL~~LdLr~N~ls~~IEDaa~-----------------~f~gl~~LrkL~l~gNqlk-~I~krA---- 411 (873)
T KOG4194|consen 355 HLAEGAF-VGLSSLHKLDLRSNELSWCIEDAAV-----------------AFNGLPSLRKLRLTGNQLK-SIPKRA---- 411 (873)
T ss_pred HHHhhHH-HHhhhhhhhcCcCCeEEEEEecchh-----------------hhccchhhhheeecCceee-ecchhh----
Confidence 4433333 3366777777777777655443211 1112556777777777776 454321
Q ss_pred CCCCCccccCCCCeEeCcCCccccccchhccCCCCCCEEECC
Q 037325 513 PFLTDLGNLKQLITLVISNNNLSGEIPLLFSNISFLYILDMS 554 (598)
Q Consensus 513 ~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ls 554 (598)
+..+.+|+.|||.+|.|...-|..|..+ .|+.|.+.
T Consensus 412 -----fsgl~~LE~LdL~~NaiaSIq~nAFe~m-~Lk~Lv~n 447 (873)
T KOG4194|consen 412 -----FSGLEALEHLDLGDNAIASIQPNAFEPM-ELKELVMN 447 (873)
T ss_pred -----hccCcccceecCCCCcceeecccccccc-hhhhhhhc
Confidence 2237777788888887776667777777 77776554
|
|
| >KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-35 Score=287.29 Aligned_cols=369 Identities=23% Similarity=0.234 Sum_probs=321.6
Q ss_pred cEEEEEcCCCCCCCCCCcccCCCCCcceecCccccCCCCCCEEeCCCCCCCCCCcchhccCCCCCCEEECcCCCCCcccc
Q 037325 76 SVIKLNLNNPFRDSFGSFEDDAGHELGGEISPSLLQLKDLEYLDLSMNNFTGFQVPEFIGSLKELRYLNLSGSFFSGTIP 155 (598)
Q Consensus 76 ~v~~L~L~~~~~~~~~~~~~~~~~~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p 155 (598)
.+..||+++ |.+...-+..|.++++|+.+++.+|.++ .+|.+.+...+|+.|+|.+|.|+..-.
T Consensus 79 ~t~~Ldlsn--------------Nkl~~id~~~f~nl~nLq~v~l~~N~Lt--~IP~f~~~sghl~~L~L~~N~I~sv~s 142 (873)
T KOG4194|consen 79 QTQTLDLSN--------------NKLSHIDFEFFYNLPNLQEVNLNKNELT--RIPRFGHESGHLEKLDLRHNLISSVTS 142 (873)
T ss_pred ceeeeeccc--------------cccccCcHHHHhcCCcceeeeeccchhh--hcccccccccceeEEeeeccccccccH
Confidence 456677777 7888888888999999999999999999 689988888899999999999997777
Q ss_pred hhccCCCCCCEEEccCCCCCCCccChhhhcCCCCCcEEEcCCCCCCCCcccchHhhhcCCCCCEEEcCCCCCCCCCCCCC
Q 037325 156 QTLGNLSNLLYLDLNNFLDQSNQIDLEWLSGLSSLVYFNLGGADLSKAGAYWLEVFNKLHSFVELHLPNCNLPSLPLSFP 235 (598)
Q Consensus 156 ~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~ 235 (598)
..+..++.|++|||+.|.+.... ...|..-.++++|+|++|.++... ...|..+.+|..|.++.|.++.+|+ ..
T Consensus 143 e~L~~l~alrslDLSrN~is~i~--~~sfp~~~ni~~L~La~N~It~l~---~~~F~~lnsL~tlkLsrNrittLp~-r~ 216 (873)
T KOG4194|consen 143 EELSALPALRSLDLSRNLISEIP--KPSFPAKVNIKKLNLASNRITTLE---TGHFDSLNSLLTLKLSRNRITTLPQ-RS 216 (873)
T ss_pred HHHHhHhhhhhhhhhhchhhccc--CCCCCCCCCceEEeeccccccccc---cccccccchheeeecccCcccccCH-HH
Confidence 78999999999999998764332 244777789999999999999887 5788999999999999999999998 88
Q ss_pred cCCCCCccEEEccCCCCCCCcchhhhcCCCCCEEEccCCcccccCCccccCCCCccEEECcCCCcCccccchhhcCCCCC
Q 037325 236 SLNFASLQVLDLSNNDFNSTTPHWLFNITSLLCLDLGSNDLQGDIPDGFASLNSLQELDLSGNSFLGGQLSRNLGKLCNL 315 (598)
Q Consensus 236 ~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~l~~l~~L 315 (598)
|.++++|+.|+|..|++...--..|..+++|+.|.+..|.+...-...|..+.++++|+|+.|+ +...-..++.+++.|
T Consensus 217 Fk~L~~L~~LdLnrN~irive~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~-l~~vn~g~lfgLt~L 295 (873)
T KOG4194|consen 217 FKRLPKLESLDLNRNRIRIVEGLTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNR-LQAVNEGWLFGLTSL 295 (873)
T ss_pred hhhcchhhhhhccccceeeehhhhhcCchhhhhhhhhhcCcccccCcceeeecccceeecccch-hhhhhcccccccchh
Confidence 8899999999999999876555668899999999999999986666678899999999999999 666667788899999
Q ss_pred CEEecccccCCcccchhhhCCCCCCCCCCccEEEccCccccccCccccCCCCCCCEEEccCCcCCccchhhccCCCCCCE
Q 037325 316 RTMILSRNNISSEVSDFLDGLSECTNSILLEKLELRFNQFTGILPISLGSLKNLRHLVLWQNSFLGSIPPSIGNLTLLKE 395 (598)
Q Consensus 316 ~~L~l~~n~l~~~~~~~~~~l~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~ls~n~l~~~~~~~l~~l~~L~~ 395 (598)
+.|+++.|.+...-++.+.-.+ +|++|+|++|.++..-+..+..+..|++|.+++|.+...-...|..+.+|++
T Consensus 296 ~~L~lS~NaI~rih~d~Wsftq------kL~~LdLs~N~i~~l~~~sf~~L~~Le~LnLs~Nsi~~l~e~af~~lssL~~ 369 (873)
T KOG4194|consen 296 EQLDLSYNAIQRIHIDSWSFTQ------KLKELDLSSNRITRLDEGSFRVLSQLEELNLSHNSIDHLAEGAFVGLSSLHK 369 (873)
T ss_pred hhhccchhhhheeecchhhhcc------cceeEeccccccccCChhHHHHHHHhhhhcccccchHHHHhhHHHHhhhhhh
Confidence 9999999999988888887777 8999999999999888889999999999999999998666667889999999
Q ss_pred EeCcCCcCCcccCCCchhhhcCCCCCCEEEccCccCccccchHHHhcCCCCCEEEccCCcCcccCCCCcccCCCCEEEcc
Q 037325 396 LYLASNQMNGQKISDSYQHLKNQTELRTLVLNKARISDTISDWFWQLSLTLDELDVAYNELRGRVPNSLGFNFPAKVDLS 475 (598)
Q Consensus 396 L~l~~n~l~~~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~ls~n~~~~~~p~~~~~~~L~~l~ls 475 (598)
||+++|.+...+ .+....+..+++|+.|++.+|++....-..|.. ++.|++|||.+|.+-..-|..|....|+.|.+.
T Consensus 370 LdLr~N~ls~~I-EDaa~~f~gl~~LrkL~l~gNqlk~I~krAfsg-l~~LE~LdL~~NaiaSIq~nAFe~m~Lk~Lv~n 447 (873)
T KOG4194|consen 370 LDLRSNELSWCI-EDAAVAFNGLPSLRKLRLTGNQLKSIPKRAFSG-LEALEHLDLGDNAIASIQPNAFEPMELKELVMN 447 (873)
T ss_pred hcCcCCeEEEEE-ecchhhhccchhhhheeecCceeeecchhhhcc-CcccceecCCCCcceeecccccccchhhhhhhc
Confidence 999999998877 556677888999999999999998665555554 899999999999998888888776666666544
|
|
| >KOG0472 consensus Leucine-rich repeat protein [Function unknown] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-37 Score=291.10 Aligned_cols=422 Identities=27% Similarity=0.350 Sum_probs=329.3
Q ss_pred EEEEEcCCCCCCCCCCcccCCCCCcceecCccccCCCCCCEEeCCCCCCCCCCcchhccCCCCCCEEECcCCCCCcccch
Q 037325 77 VIKLNLNNPFRDSFGSFEDDAGHELGGEISPSLLQLKDLEYLDLSMNNFTGFQVPEFIGSLKELRYLNLSGSFFSGTIPQ 156 (598)
Q Consensus 77 v~~L~L~~~~~~~~~~~~~~~~~~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~ 156 (598)
.+.+++.. +.++ ++|++++.+..++.|+.++|++. ++|..+..+.+|+.|+.++|.+. .+|+
T Consensus 70 l~vl~~~~--------------n~l~-~lp~aig~l~~l~~l~vs~n~ls--~lp~~i~s~~~l~~l~~s~n~~~-el~~ 131 (565)
T KOG0472|consen 70 LTVLNVHD--------------NKLS-QLPAAIGELEALKSLNVSHNKLS--ELPEQIGSLISLVKLDCSSNELK-ELPD 131 (565)
T ss_pred eeEEEecc--------------chhh-hCCHHHHHHHHHHHhhcccchHh--hccHHHhhhhhhhhhhcccccee-ecCc
Confidence 56777766 4544 67889999999999999999999 79999999999999999999999 8899
Q ss_pred hccCCCCCCEEEccCCCCCCCccChhhhcCCCCCcEEEcCCCCCCCCcccchHhhhcCCCCCEEEcCCCCCCCCCCCCCc
Q 037325 157 TLGNLSNLLYLDLNNFLDQSNQIDLEWLSGLSSLVYFNLGGADLSKAGAYWLEVFNKLHSFVELHLPNCNLPSLPLSFPS 236 (598)
Q Consensus 157 ~l~~l~~L~~L~L~~n~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~ 236 (598)
.++.+..|+.++..+|++...+.. +.++.++..+++.+|.+.... ++.+ +++.|++++...|-++.+|+ ..
T Consensus 132 ~i~~~~~l~dl~~~~N~i~slp~~---~~~~~~l~~l~~~~n~l~~l~---~~~i-~m~~L~~ld~~~N~L~tlP~--~l 202 (565)
T KOG0472|consen 132 SIGRLLDLEDLDATNNQISSLPED---MVNLSKLSKLDLEGNKLKALP---ENHI-AMKRLKHLDCNSNLLETLPP--EL 202 (565)
T ss_pred hHHHHhhhhhhhccccccccCchH---HHHHHHHHHhhccccchhhCC---HHHH-HHHHHHhcccchhhhhcCCh--hh
Confidence 999999999999999887655543 677888999999999998885 3444 49999999999999999986 56
Q ss_pred CCCCCccEEEccCCCCCCCcchhhhcCCCCCEEEccCCcccccCCccc-cCCCCccEEECcCCCcCccccchhhcCCCCC
Q 037325 237 LNFASLQVLDLSNNDFNSTTPHWLFNITSLLCLDLGSNDLQGDIPDGF-ASLNSLQELDLSGNSFLGGQLSRNLGKLCNL 315 (598)
Q Consensus 237 ~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l-~~l~~L~~L~l~~n~~~~~~~~~~l~~l~~L 315 (598)
+.+.+|+.|++..|++. ..| .|..+..|++++++.|++. .+|.+. .+++++..||+..|++ ...|..+.-+.+|
T Consensus 203 g~l~~L~~LyL~~Nki~-~lP-ef~gcs~L~Elh~g~N~i~-~lpae~~~~L~~l~vLDLRdNkl--ke~Pde~clLrsL 277 (565)
T KOG0472|consen 203 GGLESLELLYLRRNKIR-FLP-EFPGCSLLKELHVGENQIE-MLPAEHLKHLNSLLVLDLRDNKL--KEVPDEICLLRSL 277 (565)
T ss_pred cchhhhHHHHhhhcccc-cCC-CCCccHHHHHHHhcccHHH-hhHHHHhcccccceeeecccccc--ccCchHHHHhhhh
Confidence 68899999999999997 455 6888999999999999998 667655 4899999999999996 6788889899999
Q ss_pred CEEecccccCCcccchhhhCCCCCCCCCCccEEEccCcccccc-------------------------------------
Q 037325 316 RTMILSRNNISSEVSDFLDGLSECTNSILLEKLELRFNQFTGI------------------------------------- 358 (598)
Q Consensus 316 ~~L~l~~n~l~~~~~~~~~~l~~~~~~~~L~~L~Ls~n~l~~~------------------------------------- 358 (598)
..|++++|.+++..+ .++.+ .|+.|-+.+|.+...
T Consensus 278 ~rLDlSNN~is~Lp~-sLgnl-------hL~~L~leGNPlrTiRr~ii~~gT~~vLKyLrs~~~~dglS~se~~~e~~~t 349 (565)
T KOG0472|consen 278 ERLDLSNNDISSLPY-SLGNL-------HLKFLALEGNPLRTIRREIISKGTQEVLKYLRSKIKDDGLSQSEGGTETAMT 349 (565)
T ss_pred hhhcccCCccccCCc-ccccc-------eeeehhhcCCchHHHHHHHHcccHHHHHHHHHHhhccCCCCCCcccccccCC
Confidence 999999999987544 45555 388888999876411
Q ss_pred Ccc----ccCCCCCCCEEEccCCcCCccchhhccCCCC---CCEEeCcCCcCCcccCCCchhhhcCCCCCCE-EEccCcc
Q 037325 359 LPI----SLGSLKNLRHLVLWQNSFLGSIPPSIGNLTL---LKELYLASNQMNGQKISDSYQHLKNQTELRT-LVLNKAR 430 (598)
Q Consensus 359 ~~~----~l~~l~~L~~L~ls~n~l~~~~~~~l~~l~~---L~~L~l~~n~l~~~~~~~~~~~l~~~~~L~~-L~l~~n~ 430 (598)
.+. ......+.+.|++++-+++ .+|..+....+ ...++++.|++... |.. +..+..+.+ +++++|.
T Consensus 350 ~~~~~~~~~~~~i~tkiL~~s~~qlt-~VPdEVfea~~~~~Vt~VnfskNqL~el--Pk~---L~~lkelvT~l~lsnn~ 423 (565)
T KOG0472|consen 350 LPSESFPDIYAIITTKILDVSDKQLT-LVPDEVFEAAKSEIVTSVNFSKNQLCEL--PKR---LVELKELVTDLVLSNNK 423 (565)
T ss_pred CCCCcccchhhhhhhhhhcccccccc-cCCHHHHHHhhhcceEEEecccchHhhh--hhh---hHHHHHHHHHHHhhcCc
Confidence 000 0112335667777777776 55655443333 66788888887655 322 333333433 3444444
Q ss_pred CccccchHHHhcCCCCCEEEccCCcCcccCCCCcccC-CCCEEEcccCcCcccCCCCC---cCCcEEEccCCcccccCCc
Q 037325 431 ISDTISDWFWQLSLTLDELDVAYNELRGRVPNSLGFN-FPAKVDLSFNNFEGRLLLWS---FNVTKLYLRDNSFSGLIPN 506 (598)
Q Consensus 431 l~~~~~~~~~~~~~~L~~L~ls~n~~~~~~p~~~~~~-~L~~l~ls~n~l~~~~~~~~---~~L~~L~ls~n~l~~~~p~ 506 (598)
+ +.+|..+.. +++|+.|++++|.+. .+|..++.. .++.+|+|.|+|. .+|..+ ..++.+-.++|++...-|.
T Consensus 424 i-sfv~~~l~~-l~kLt~L~L~NN~Ln-~LP~e~~~lv~Lq~LnlS~NrFr-~lP~~~y~lq~lEtllas~nqi~~vd~~ 499 (565)
T KOG0472|consen 424 I-SFVPLELSQ-LQKLTFLDLSNNLLN-DLPEEMGSLVRLQTLNLSFNRFR-MLPECLYELQTLETLLASNNQIGSVDPS 499 (565)
T ss_pred c-ccchHHHHh-hhcceeeecccchhh-hcchhhhhhhhhheecccccccc-cchHHHhhHHHHHHHHhccccccccChH
Confidence 4 466666655 789999999998876 677777766 8999999999876 455543 4555666677888744444
Q ss_pred hhhcccCCCCCccccCCCCeEeCcCCccccccchhccCCCCCCEEECCCCcCc
Q 037325 507 DIGQNLPFLTDLGNLKQLITLVISNNNLSGEIPLLFSNISFLYILDMSNNSLS 559 (598)
Q Consensus 507 ~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ls~N~l~ 559 (598)
.+.. +..|+.|||.+|.+. .+|..+++|++|++|++.+|.|.
T Consensus 500 ~l~n----------m~nL~tLDL~nNdlq-~IPp~LgnmtnL~hLeL~gNpfr 541 (565)
T KOG0472|consen 500 GLKN----------MRNLTTLDLQNNDLQ-QIPPILGNMTNLRHLELDGNPFR 541 (565)
T ss_pred Hhhh----------hhhcceeccCCCchh-hCChhhccccceeEEEecCCccC
Confidence 4666 999999999999998 99999999999999999999998
|
|
| >KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.97 E-value=2e-34 Score=295.76 Aligned_cols=421 Identities=26% Similarity=0.300 Sum_probs=317.2
Q ss_pred ccccCCCCCCEEeCCCCCCCCCCcchhccCCCCCCEEECcCCCCCcccchhccCCCCCCEEEccCCCCCCCccChhhhcC
Q 037325 107 PSLLQLKDLEYLDLSMNNFTGFQVPEFIGSLKELRYLNLSGSFFSGTIPQTLGNLSNLLYLDLNNFLDQSNQIDLEWLSG 186 (598)
Q Consensus 107 ~~l~~l~~L~~L~Ls~n~l~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~~ 186 (598)
+.+.+.-+|+.||+++|++. .+|..+..+.+|+.|+++.|.+. ..|.+..++.+|++|.|..|.....+. .+..
T Consensus 39 ~~~~~~v~L~~l~lsnn~~~--~fp~~it~l~~L~~ln~s~n~i~-~vp~s~~~~~~l~~lnL~~n~l~~lP~---~~~~ 112 (1081)
T KOG0618|consen 39 EFVEKRVKLKSLDLSNNQIS--SFPIQITLLSHLRQLNLSRNYIR-SVPSSCSNMRNLQYLNLKNNRLQSLPA---SISE 112 (1081)
T ss_pred HHhhheeeeEEeeccccccc--cCCchhhhHHHHhhcccchhhHh-hCchhhhhhhcchhheeccchhhcCch---hHHh
Confidence 34455566999999999988 57888888999999999999888 788888899999999999887654443 3777
Q ss_pred CCCCcEEEcCCCCCCCCcccchHhhhcCCCCCEEEcCCC-CCCCCCCCCCcCCCCCccEEEccCCCCCCCcchhhhcCCC
Q 037325 187 LSSLVYFNLGGADLSKAGAYWLEVFNKLHSFVELHLPNC-NLPSLPLSFPSLNFASLQVLDLSNNDFNSTTPHWLFNITS 265 (598)
Q Consensus 187 l~~L~~L~l~~n~~~~~~~~~~~~~~~l~~L~~L~l~~~-~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~ 265 (598)
+++|++|++++|.+... |..+..++.+..+..++| .+...+. ..++.+++..|.+.+.++..+..++.
T Consensus 113 lknl~~LdlS~N~f~~~----Pl~i~~lt~~~~~~~s~N~~~~~lg~-------~~ik~~~l~~n~l~~~~~~~i~~l~~ 181 (1081)
T KOG0618|consen 113 LKNLQYLDLSFNHFGPI----PLVIEVLTAEEELAASNNEKIQRLGQ-------TSIKKLDLRLNVLGGSFLIDIYNLTH 181 (1081)
T ss_pred hhcccccccchhccCCC----chhHHhhhHHHHHhhhcchhhhhhcc-------ccchhhhhhhhhcccchhcchhhhhe
Confidence 88899999999999877 567888888888888888 2222222 23788888889888888887877777
Q ss_pred CCEEEccCCcccccCCccccCCCCccEEECcCCCcCccccchhhcCCCCCCEEecccccCCcccchhhhCCCCCCCCCCc
Q 037325 266 LLCLDLGSNDLQGDIPDGFASLNSLQELDLSGNSFLGGQLSRNLGKLCNLRTMILSRNNISSEVSDFLDGLSECTNSILL 345 (598)
Q Consensus 266 L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~~~~~~~L 345 (598)
.|++.+|.+. ...+..+.+|+.+....|.+ ... .-.-++++.|+.++|.++...+..... +|
T Consensus 182 --~ldLr~N~~~---~~dls~~~~l~~l~c~rn~l-s~l----~~~g~~l~~L~a~~n~l~~~~~~p~p~--------nl 243 (1081)
T KOG0618|consen 182 --QLDLRYNEME---VLDLSNLANLEVLHCERNQL-SEL----EISGPSLTALYADHNPLTTLDVHPVPL--------NL 243 (1081)
T ss_pred --eeecccchhh---hhhhhhccchhhhhhhhccc-ceE----EecCcchheeeeccCcceeeccccccc--------cc
Confidence 7999999876 23466788889998888874 211 124468999999999888544433222 79
Q ss_pred cEEEccCccccccCccccCCCCCCCEEEccCCcCCccchhhccCCCCCCEEeCcCCcCCcccCCCchhhhcCCCCCCEEE
Q 037325 346 EKLELRFNQFTGILPISLGSLKNLRHLVLWQNSFLGSIPPSIGNLTLLKELYLASNQMNGQKISDSYQHLKNQTELRTLV 425 (598)
Q Consensus 346 ~~L~Ls~n~l~~~~~~~l~~l~~L~~L~ls~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~~~~L~~L~ 425 (598)
++++++.|++.+ +|.|++.+.+|+.++..+|+++ .+|..+....+|+.|.+.+|.+.-.. + .+...+.|++|+
T Consensus 244 ~~~dis~n~l~~-lp~wi~~~~nle~l~~n~N~l~-~lp~ri~~~~~L~~l~~~~nel~yip-~----~le~~~sL~tLd 316 (1081)
T KOG0618|consen 244 QYLDISHNNLSN-LPEWIGACANLEALNANHNRLV-ALPLRISRITSLVSLSAAYNELEYIP-P----FLEGLKSLRTLD 316 (1081)
T ss_pred eeeecchhhhhc-chHHHHhcccceEecccchhHH-hhHHHHhhhhhHHHHHhhhhhhhhCC-C----cccccceeeeee
Confidence 999999999984 6799999999999999999996 88888999999999999999987654 2 356688999999
Q ss_pred ccCccCccccchHHHhcCCCCCEEEccCCcCcccCCCCcccC--CCCEEEcccCcCcccCCCC---CcCCcEEEccCCcc
Q 037325 426 LNKARISDTISDWFWQLSLTLDELDVAYNELRGRVPNSLGFN--FPAKVDLSFNNFEGRLLLW---SFNVTKLYLRDNSF 500 (598)
Q Consensus 426 l~~n~l~~~~~~~~~~~~~~L~~L~ls~n~~~~~~p~~~~~~--~L~~l~ls~n~l~~~~~~~---~~~L~~L~ls~n~l 500 (598)
+..|++....+..+......+..++.+.|++. ..|..-... .|+.|.+.+|.++...... ..+|+.|+|++|++
T Consensus 317 L~~N~L~~lp~~~l~v~~~~l~~ln~s~n~l~-~lp~~~e~~~~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsyNrL 395 (1081)
T KOG0618|consen 317 LQSNNLPSLPDNFLAVLNASLNTLNVSSNKLS-TLPSYEENNHAALQELYLANNHLTDSCFPVLVNFKHLKVLHLSYNRL 395 (1081)
T ss_pred ehhccccccchHHHhhhhHHHHHHhhhhcccc-ccccccchhhHHHHHHHHhcCcccccchhhhccccceeeeeeccccc
Confidence 99999986655444332233677777777765 233211111 6777788888887755443 46788888888888
Q ss_pred cccCCchhhcccCCCCCccccCCCCeEeCcCCccccccchhccCCCCCCEEECCCCcCccccchhccCCCCCCEEEccCC
Q 037325 501 SGLIPNDIGQNLPFLTDLGNLKQLITLVISNNNLSGEIPLLFSNISFLYILDMSNNSLSGSTPESIGSLRTVKFLVLRNN 580 (598)
Q Consensus 501 ~~~~p~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~l~~l~~L~~L~l~~n 580 (598)
. ++|..... ++..|+.|+||+|+++ .+|.++.+++.|++|...+|++. ..| ++..++.|+.+|++.|
T Consensus 396 ~-~fpas~~~---------kle~LeeL~LSGNkL~-~Lp~tva~~~~L~tL~ahsN~l~-~fP-e~~~l~qL~~lDlS~N 462 (1081)
T KOG0618|consen 396 N-SFPASKLR---------KLEELEELNLSGNKLT-TLPDTVANLGRLHTLRAHSNQLL-SFP-ELAQLPQLKVLDLSCN 462 (1081)
T ss_pred c-cCCHHHHh---------chHHhHHHhcccchhh-hhhHHHHhhhhhHHHhhcCCcee-ech-hhhhcCcceEEecccc
Confidence 6 56654332 3777888888888887 77777777777777777777776 566 6677777777777777
Q ss_pred CCc
Q 037325 581 YLS 583 (598)
Q Consensus 581 ~l~ 583 (598)
+++
T Consensus 463 ~L~ 465 (1081)
T KOG0618|consen 463 NLS 465 (1081)
T ss_pred hhh
Confidence 765
|
|
| >KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.8e-33 Score=276.52 Aligned_cols=367 Identities=25% Similarity=0.332 Sum_probs=233.5
Q ss_pred CCCCCCEEeCCCCCCCCCCcchhccCCCCCCEEECcCCCCCcccchhccCCCCCCEEEccCCCCCCCccChhhhcCCCCC
Q 037325 111 QLKDLEYLDLSMNNFTGFQVPEFIGSLKELRYLNLSGSFFSGTIPQTLGNLSNLLYLDLNNFLDQSNQIDLEWLSGLSSL 190 (598)
Q Consensus 111 ~l~~L~~L~Ls~n~l~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~~l~~L 190 (598)
-++.++-.|+++|.++|..+|....++++++.|.|...++. .+|..++.+.+|++|.+++|++..... .++.++.|
T Consensus 5 VLpFVrGvDfsgNDFsg~~FP~~v~qMt~~~WLkLnrt~L~-~vPeEL~~lqkLEHLs~~HN~L~~vhG---ELs~Lp~L 80 (1255)
T KOG0444|consen 5 VLPFVRGVDFSGNDFSGDRFPHDVEQMTQMTWLKLNRTKLE-QVPEELSRLQKLEHLSMAHNQLISVHG---ELSDLPRL 80 (1255)
T ss_pred ccceeecccccCCcCCCCcCchhHHHhhheeEEEechhhhh-hChHHHHHHhhhhhhhhhhhhhHhhhh---hhccchhh
Confidence 35667778888888887778888888888888888888887 788888888888888887766533222 14445555
Q ss_pred cEEEcCCCCCCCCcccchHhhhcCCCCCEEEcCCCCCCCCCCCCCcCCCCCccEEEccCCCCCCCcchhhhcCCCCCEEE
Q 037325 191 VYFNLGGADLSKAGAYWLEVFNKLHSFVELHLPNCNLPSLPLSFPSLNFASLQVLDLSNNDFNSTTPHWLFNITSLLCLD 270 (598)
Q Consensus 191 ~~L~l~~n~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~ 270 (598)
+.+.+.+|++..... |..+..+..|..|++++|+++..| ..+..-+++-.|+
T Consensus 81 Rsv~~R~N~LKnsGi--P~diF~l~dLt~lDLShNqL~EvP--------------------------~~LE~AKn~iVLN 132 (1255)
T KOG0444|consen 81 RSVIVRDNNLKNSGI--PTDIFRLKDLTILDLSHNQLREVP--------------------------TNLEYAKNSIVLN 132 (1255)
T ss_pred HHHhhhccccccCCC--Cchhcccccceeeecchhhhhhcc--------------------------hhhhhhcCcEEEE
Confidence 555555555433221 344445555555555555555444 4444444444444
Q ss_pred ccCCcccccCC-ccccCCCCccEEECcCCCcCccccchhhcCCCCCCEEecccccCCcccchhhhCCCCCCCCCCccEEE
Q 037325 271 LGSNDLQGDIP-DGFASLNSLQELDLSGNSFLGGQLSRNLGKLCNLRTMILSRNNISSEVSDFLDGLSECTNSILLEKLE 349 (598)
Q Consensus 271 l~~n~l~~~~~-~~l~~l~~L~~L~l~~n~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~~~~~~~L~~L~ 349 (598)
+++|++. .+| ..+.+++-|-.|++++|++ ..+|..+..+..|++|.+++|.+.-.--..+..++ +|+.|.
T Consensus 133 LS~N~Ie-tIPn~lfinLtDLLfLDLS~NrL--e~LPPQ~RRL~~LqtL~Ls~NPL~hfQLrQLPsmt------sL~vLh 203 (1255)
T KOG0444|consen 133 LSYNNIE-TIPNSLFINLTDLLFLDLSNNRL--EMLPPQIRRLSMLQTLKLSNNPLNHFQLRQLPSMT------SLSVLH 203 (1255)
T ss_pred cccCccc-cCCchHHHhhHhHhhhccccchh--hhcCHHHHHHhhhhhhhcCCChhhHHHHhcCccch------hhhhhh
Confidence 4444444 223 2233444444455555542 33344444444555555555433321111122222 667777
Q ss_pred ccCcccc-ccCccccCCCCCCCEEEccCCcCCccchhhccCCCCCCEEeCcCCcCCcccCCCchhhhcCCCCCCEEEccC
Q 037325 350 LRFNQFT-GILPISLGSLKNLRHLVLWQNSFLGSIPPSIGNLTLLKELYLASNQMNGQKISDSYQHLKNQTELRTLVLNK 428 (598)
Q Consensus 350 Ls~n~l~-~~~~~~l~~l~~L~~L~ls~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~~~~L~~L~l~~ 428 (598)
+++.+-+ ..+|..+..+.+|..+|+|.|.+. .+|+.+..+++|+.|++++|+|+.... ......+|++|+++.
T Consensus 204 ms~TqRTl~N~Ptsld~l~NL~dvDlS~N~Lp-~vPecly~l~~LrrLNLS~N~iteL~~-----~~~~W~~lEtLNlSr 277 (1255)
T KOG0444|consen 204 MSNTQRTLDNIPTSLDDLHNLRDVDLSENNLP-IVPECLYKLRNLRRLNLSGNKITELNM-----TEGEWENLETLNLSR 277 (1255)
T ss_pred cccccchhhcCCCchhhhhhhhhccccccCCC-cchHHHhhhhhhheeccCcCceeeeec-----cHHHHhhhhhhcccc
Confidence 7665432 357778888888888889888887 788888888889999999988875431 234456678888888
Q ss_pred ccCccccchHHHhcCCCCCEEEccCCcCcc-cCCCCcccCCCCEEEcccCcCcccCCCCCcCCcEEEccCCcccccCCch
Q 037325 429 ARISDTISDWFWQLSLTLDELDVAYNELRG-RVPNSLGFNFPAKVDLSFNNFEGRLLLWSFNVTKLYLRDNSFSGLIPND 507 (598)
Q Consensus 429 n~l~~~~~~~~~~~~~~L~~L~ls~n~~~~-~~p~~~~~~~L~~l~ls~n~l~~~~~~~~~~L~~L~ls~n~l~~~~p~~ 507 (598)
|+++ ..|..+++ ++.|+.|.+.+|+++- -+|+.++. +..|+.+..++|.+. .+|++
T Consensus 278 NQLt-~LP~avcK-L~kL~kLy~n~NkL~FeGiPSGIGK--------------------L~~Levf~aanN~LE-lVPEg 334 (1255)
T KOG0444|consen 278 NQLT-VLPDAVCK-LTKLTKLYANNNKLTFEGIPSGIGK--------------------LIQLEVFHAANNKLE-LVPEG 334 (1255)
T ss_pred chhc-cchHHHhh-hHHHHHHHhccCcccccCCccchhh--------------------hhhhHHHHhhccccc-cCchh
Confidence 8876 56676766 6677777777777642 13433332 335666667777776 77877
Q ss_pred hhcccCCCCCccccCCCCeEeCcCCccccccchhccCCCCCCEEECCCCcC
Q 037325 508 IGQNLPFLTDLGNLKQLITLVISNNNLSGEIPLLFSNISFLYILDMSNNSL 558 (598)
Q Consensus 508 ~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ls~N~l 558 (598)
++. +..|+.|.|++|.+- ++|+.|.=++.|++||+..|.-
T Consensus 335 lcR----------C~kL~kL~L~~NrLi-TLPeaIHlL~~l~vLDlreNpn 374 (1255)
T KOG0444|consen 335 LCR----------CVKLQKLKLDHNRLI-TLPEAIHLLPDLKVLDLRENPN 374 (1255)
T ss_pred hhh----------hHHHHHhccccccee-echhhhhhcCCcceeeccCCcC
Confidence 776 778888888888877 7888888888888888888853
|
|
| >KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.96 E-value=2.2e-32 Score=268.90 Aligned_cols=387 Identities=24% Similarity=0.304 Sum_probs=277.6
Q ss_pred cEEEEEcCCCCCCCCCCcccCCCCCcc-eecCccccCCCCCCEEeCCCCCCCCCCcchhccCCCCCCEEECcCCCCCccc
Q 037325 76 SVIKLNLNNPFRDSFGSFEDDAGHELG-GEISPSLLQLKDLEYLDLSMNNFTGFQVPEFIGSLKELRYLNLSGSFFSGTI 154 (598)
Q Consensus 76 ~v~~L~L~~~~~~~~~~~~~~~~~~l~-~~~~~~l~~l~~L~~L~Ls~n~l~~~~~p~~~~~l~~L~~L~L~~n~l~~~~ 154 (598)
-|+.+|+++ |.++ +.+|..+..++.++.|.|....+. ++|+.++.+.+|++|.+++|++. .+
T Consensus 8 FVrGvDfsg--------------NDFsg~~FP~~v~qMt~~~WLkLnrt~L~--~vPeEL~~lqkLEHLs~~HN~L~-~v 70 (1255)
T KOG0444|consen 8 FVRGVDFSG--------------NDFSGDRFPHDVEQMTQMTWLKLNRTKLE--QVPEELSRLQKLEHLSMAHNQLI-SV 70 (1255)
T ss_pred eeecccccC--------------CcCCCCcCchhHHHhhheeEEEechhhhh--hChHHHHHHhhhhhhhhhhhhhH-hh
Confidence 577888888 7787 578999999999999999999998 79999999999999999999998 66
Q ss_pred chhccCCCCCCEEEccCCCCCCCccChhhhcCCCCCcEEEcCCCCCCCCcccchHhhhcCCCCCEEEcCCCCCCCCCCCC
Q 037325 155 PQTLGNLSNLLYLDLNNFLDQSNQIDLEWLSGLSSLVYFNLGGADLSKAGAYWLEVFNKLHSFVELHLPNCNLPSLPLSF 234 (598)
Q Consensus 155 p~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~ 234 (598)
-..+..++.|+.+++..|++...... ..+..+..|+.|+|++|++... |..+..-+++..|++++|+|..+|. .
T Consensus 71 hGELs~Lp~LRsv~~R~N~LKnsGiP-~diF~l~dLt~lDLShNqL~Ev----P~~LE~AKn~iVLNLS~N~IetIPn-~ 144 (1255)
T KOG0444|consen 71 HGELSDLPRLRSVIVRDNNLKNSGIP-TDIFRLKDLTILDLSHNQLREV----PTNLEYAKNSIVLNLSYNNIETIPN-S 144 (1255)
T ss_pred hhhhccchhhHHHhhhccccccCCCC-chhcccccceeeecchhhhhhc----chhhhhhcCcEEEEcccCccccCCc-h
Confidence 67788999999999999877433322 2367889999999999999988 6788888888899999999888887 5
Q ss_pred CcCCCCCccEEEccCCCCCCCcchhhhcCCCCCEEEccCCcccccCCccccCCCCccEEECcCCCcCccccchhhcCCCC
Q 037325 235 PSLNFASLQVLDLSNNDFNSTTPHWLFNITSLLCLDLGSNDLQGDIPDGFASLNSLQELDLSGNSFLGGQLSRNLGKLCN 314 (598)
Q Consensus 235 ~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~l~~l~~ 314 (598)
.+.++..|-.||+++|++. .+|..+..+..|++|.+++|.+.-.-...+..+++|+.|.+++.+.+-..+|..+..+.+
T Consensus 145 lfinLtDLLfLDLS~NrLe-~LPPQ~RRL~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~N 223 (1255)
T KOG0444|consen 145 LFINLTDLLFLDLSNNRLE-MLPPQIRRLSMLQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHN 223 (1255)
T ss_pred HHHhhHhHhhhccccchhh-hcCHHHHHHhhhhhhhcCCChhhHHHHhcCccchhhhhhhcccccchhhcCCCchhhhhh
Confidence 5567777888888888876 456667778888888888887653222344556677777777766455667777777777
Q ss_pred CCEEecccccCCcccchhhhCCCCCCCCCCccEEEccCccccccCccccCCCCCCCEEEccCCcCCccchhhccCCCCCC
Q 037325 315 LRTMILSRNNISSEVSDFLDGLSECTNSILLEKLELRFNQFTGILPISLGSLKNLRHLVLWQNSFLGSIPPSIGNLTLLK 394 (598)
Q Consensus 315 L~~L~l~~n~l~~~~~~~~~~l~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~ls~n~l~~~~~~~l~~l~~L~ 394 (598)
|..++++.|++. ..|+.+..+. +|+.|++|+|.++ .+....+...+|+.|++|.|+++ .+|.++..+++|+
T Consensus 224 L~dvDlS~N~Lp-~vPecly~l~------~LrrLNLS~N~it-eL~~~~~~W~~lEtLNlSrNQLt-~LP~avcKL~kL~ 294 (1255)
T KOG0444|consen 224 LRDVDLSENNLP-IVPECLYKLR------NLRRLNLSGNKIT-ELNMTEGEWENLETLNLSRNQLT-VLPDAVCKLTKLT 294 (1255)
T ss_pred hhhccccccCCC-cchHHHhhhh------hhheeccCcCcee-eeeccHHHHhhhhhhccccchhc-cchHHHhhhHHHH
Confidence 777777777665 3445555555 6777777777776 33344555667777777777776 6677777777777
Q ss_pred EEeCcCCcCCcccCCCchhhhcCCCCCCEEEccCccCccccchHHHhcCCCCCEEEccCCcCcccCCCCcccCCCCEEEc
Q 037325 395 ELYLASNQMNGQKISDSYQHLKNQTELRTLVLNKARISDTISDWFWQLSLTLDELDVAYNELRGRVPNSLGFNFPAKVDL 474 (598)
Q Consensus 395 ~L~l~~n~l~~~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~ls~n~~~~~~p~~~~~~~L~~l~l 474 (598)
.|.+.+|+++-+.+|.. ++++ .+|+.+..++|.+. ..|..+..
T Consensus 295 kLy~n~NkL~FeGiPSG---IGKL-------------------------~~Levf~aanN~LE-lVPEglcR-------- 337 (1255)
T KOG0444|consen 295 KLYANNNKLTFEGIPSG---IGKL-------------------------IQLEVFHAANNKLE-LVPEGLCR-------- 337 (1255)
T ss_pred HHHhccCcccccCCccc---hhhh-------------------------hhhHHHHhhccccc-cCchhhhh--------
Confidence 77777776665444432 2333 34555555555543 33333221
Q ss_pred ccCcCcccCCCCCcCCcEEEccCCcccccCCchhhcccCCCCCccccCCCCeEeCcCCccccccchhccCCCCCCEEECC
Q 037325 475 SFNNFEGRLLLWSFNVTKLYLRDNSFSGLIPNDIGQNLPFLTDLGNLKQLITLVISNNNLSGEIPLLFSNISFLYILDMS 554 (598)
Q Consensus 475 s~n~l~~~~~~~~~~L~~L~ls~n~l~~~~p~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ls 554 (598)
++.|+.|.|+.|++- .+|..|.- ++.|+.||+.+|.=.-..|.--..-+.|+.-++.
T Consensus 338 ------------C~kL~kL~L~~NrLi-TLPeaIHl----------L~~l~vLDlreNpnLVMPPKP~da~~~lefYNID 394 (1255)
T KOG0444|consen 338 ------------CVKLQKLKLDHNRLI-TLPEAIHL----------LPDLKVLDLRENPNLVMPPKPNDARKKLEFYNID 394 (1255)
T ss_pred ------------hHHHHHhccccccee-echhhhhh----------cCCcceeeccCCcCccCCCCcchhhhcceeeecc
Confidence 345666777777765 78888887 8999999999997552333222222566665554
Q ss_pred C
Q 037325 555 N 555 (598)
Q Consensus 555 ~ 555 (598)
.
T Consensus 395 F 395 (1255)
T KOG0444|consen 395 F 395 (1255)
T ss_pred e
Confidence 4
|
|
| >KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.5e-31 Score=274.77 Aligned_cols=421 Identities=25% Similarity=0.316 Sum_probs=248.3
Q ss_pred cEEEEEcCCCCCCCCCCcccCCCCCcceecCccccCCCCCCEEeCCCCCCCCCCcchhccCCCCCCEEECcCCCCCcccc
Q 037325 76 SVIKLNLNNPFRDSFGSFEDDAGHELGGEISPSLLQLKDLEYLDLSMNNFTGFQVPEFIGSLKELRYLNLSGSFFSGTIP 155 (598)
Q Consensus 76 ~v~~L~L~~~~~~~~~~~~~~~~~~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p 155 (598)
++.+||+++ +..+..|..+..+.+|+.|+++.|.+. ..|....++++|++|.|.+|.+. .+|
T Consensus 46 ~L~~l~lsn---------------n~~~~fp~~it~l~~L~~ln~s~n~i~--~vp~s~~~~~~l~~lnL~~n~l~-~lP 107 (1081)
T KOG0618|consen 46 KLKSLDLSN---------------NQISSFPIQITLLSHLRQLNLSRNYIR--SVPSSCSNMRNLQYLNLKNNRLQ-SLP 107 (1081)
T ss_pred eeEEeeccc---------------cccccCCchhhhHHHHhhcccchhhHh--hCchhhhhhhcchhheeccchhh-cCc
Confidence 478899986 445678888999999999999999998 57888899999999999999888 899
Q ss_pred hhccCCCCCCEEEccCCCCCCCccChhhhcCCCC-------------------CcEEEcCCCCCCCCcccchHhhhcCCC
Q 037325 156 QTLGNLSNLLYLDLNNFLDQSNQIDLEWLSGLSS-------------------LVYFNLGGADLSKAGAYWLEVFNKLHS 216 (598)
Q Consensus 156 ~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~~l~~-------------------L~~L~l~~n~~~~~~~~~~~~~~~l~~ 216 (598)
.++..+.+|++|+++.|.+...+.. +..+.. ++++++..|.+.+.. ...+..++.
T Consensus 108 ~~~~~lknl~~LdlS~N~f~~~Pl~---i~~lt~~~~~~~s~N~~~~~lg~~~ik~~~l~~n~l~~~~---~~~i~~l~~ 181 (1081)
T KOG0618|consen 108 ASISELKNLQYLDLSFNHFGPIPLV---IEVLTAEEELAASNNEKIQRLGQTSIKKLDLRLNVLGGSF---LIDIYNLTH 181 (1081)
T ss_pred hhHHhhhcccccccchhccCCCchh---HHhhhHHHHHhhhcchhhhhhccccchhhhhhhhhcccch---hcchhhhhe
Confidence 9999999999999999887544332 222333 444444444444332 222333332
Q ss_pred CCEEEcCCCCCCCCCCCCCcCCCCCccEEEccCCCCCCCcchhhhcCCCCCEEEccCCcccccCCccccCCCCccEEECc
Q 037325 217 FVELHLPNCNLPSLPLSFPSLNFASLQVLDLSNNDFNSTTPHWLFNITSLLCLDLGSNDLQGDIPDGFASLNSLQELDLS 296 (598)
Q Consensus 217 L~~L~l~~~~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~ 296 (598)
.|++.+|.+.. .....+++|+.+....|++.... -.-++++.|+...|.++...+. ....+|++++++
T Consensus 182 --~ldLr~N~~~~----~dls~~~~l~~l~c~rn~ls~l~----~~g~~l~~L~a~~n~l~~~~~~--p~p~nl~~~dis 249 (1081)
T KOG0618|consen 182 --QLDLRYNEMEV----LDLSNLANLEVLHCERNQLSELE----ISGPSLTALYADHNPLTTLDVH--PVPLNLQYLDIS 249 (1081)
T ss_pred --eeecccchhhh----hhhhhccchhhhhhhhcccceEE----ecCcchheeeeccCcceeeccc--cccccceeeecc
Confidence 35666665551 22334455666666555544221 1224566666666665522211 123456666666
Q ss_pred CCCcCccccchhhcCCCCCCEEecccccCCcccchhhhCCCCCCCCCCccEEEccCccccccCccccCCCCCCCEEEccC
Q 037325 297 GNSFLGGQLSRNLGKLCNLRTMILSRNNISSEVSDFLDGLSECTNSILLEKLELRFNQFTGILPISLGSLKNLRHLVLWQ 376 (598)
Q Consensus 297 ~n~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~ls~ 376 (598)
.|++ ..+|+++..+.+|+.++..+|+++ ..|......+ +|++|.+.+|.+. .+|....+++.|+.|++..
T Consensus 250 ~n~l--~~lp~wi~~~~nle~l~~n~N~l~-~lp~ri~~~~------~L~~l~~~~nel~-yip~~le~~~sL~tLdL~~ 319 (1081)
T KOG0618|consen 250 HNNL--SNLPEWIGACANLEALNANHNRLV-ALPLRISRIT------SLVSLSAAYNELE-YIPPFLEGLKSLRTLDLQS 319 (1081)
T ss_pred hhhh--hcchHHHHhcccceEecccchhHH-hhHHHHhhhh------hHHHHHhhhhhhh-hCCCcccccceeeeeeehh
Confidence 6663 334566666666666666666663 2333333333 5666666666665 3455556666666666666
Q ss_pred CcCCccchhhccCCCC-CCEEeCcCCcCCcccCCCchhhhcCCCCCCEEEccCccCccccchHHHhcCCCCCEEEccCCc
Q 037325 377 NSFLGSIPPSIGNLTL-LKELYLASNQMNGQKISDSYQHLKNQTELRTLVLNKARISDTISDWFWQLSLTLDELDVAYNE 455 (598)
Q Consensus 377 n~l~~~~~~~l~~l~~-L~~L~l~~n~l~~~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~ls~n~ 455 (598)
|++....+..+.-... |+.++.+.|++....... =...+.|+.|++.+|++++..-+.+.. .++|+.|+|++|+
T Consensus 320 N~L~~lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~----e~~~~~Lq~LylanN~Ltd~c~p~l~~-~~hLKVLhLsyNr 394 (1081)
T KOG0618|consen 320 NNLPSLPDNFLAVLNASLNTLNVSSNKLSTLPSYE----ENNHAALQELYLANNHLTDSCFPVLVN-FKHLKVLHLSYNR 394 (1081)
T ss_pred ccccccchHHHhhhhHHHHHHhhhhcccccccccc----chhhHHHHHHHHhcCcccccchhhhcc-ccceeeeeecccc
Confidence 6666322222222222 555555655554332110 122344666666666666554444433 4556666666666
Q ss_pred CcccCCCCcccCCCCEEEcccCcCcccCCCCCcCCcEEEccCCcccccCCchhhcccCCCCCccccCCCCeEeCcCCccc
Q 037325 456 LRGRVPNSLGFNFPAKVDLSFNNFEGRLLLWSFNVTKLYLRDNSFSGLIPNDIGQNLPFLTDLGNLKQLITLVISNNNLS 535 (598)
Q Consensus 456 ~~~~~p~~~~~~~L~~l~ls~n~l~~~~~~~~~~L~~L~ls~n~l~~~~p~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~ 535 (598)
+. .+|+... ..++.|+.|+||+|+++ .+|..+.. ++.|++|...+|.+.
T Consensus 395 L~-~fpas~~-------------------~kle~LeeL~LSGNkL~-~Lp~tva~----------~~~L~tL~ahsN~l~ 443 (1081)
T KOG0618|consen 395 LN-SFPASKL-------------------RKLEELEELNLSGNKLT-TLPDTVAN----------LGRLHTLRAHSNQLL 443 (1081)
T ss_pred cc-cCCHHHH-------------------hchHHhHHHhcccchhh-hhhHHHHh----------hhhhHHHhhcCCcee
Confidence 54 2333211 12455666667777766 56666655 666666666666666
Q ss_pred cccchhccCCCCCCEEECCCCcCccc-cchhccCCCCCCEEEccCCC
Q 037325 536 GEIPLLFSNISFLYILDMSNNSLSGS-TPESIGSLRTVKFLVLRNNY 581 (598)
Q Consensus 536 ~~~p~~~~~l~~L~~L~ls~N~l~~~-~p~~l~~l~~L~~L~l~~n~ 581 (598)
..| .+.++++|+++|+|.|+++.. +|..... ++|++||++||.
T Consensus 444 -~fP-e~~~l~qL~~lDlS~N~L~~~~l~~~~p~-p~LkyLdlSGN~ 487 (1081)
T KOG0618|consen 444 -SFP-ELAQLPQLKVLDLSCNNLSEVTLPEALPS-PNLKYLDLSGNT 487 (1081)
T ss_pred -ech-hhhhcCcceEEecccchhhhhhhhhhCCC-cccceeeccCCc
Confidence 566 566667777777777766533 2322222 566777777665
|
|
| >PLN03210 Resistant to P | Back alignment and domain information |
|---|
Probab=99.91 E-value=1.6e-22 Score=231.98 Aligned_cols=347 Identities=19% Similarity=0.168 Sum_probs=247.3
Q ss_pred hhhhcCCCCCcEEEcCCCCCCC---CcccchHhhhcCC-CCCEEEcCCCCCCCCCCCCCcCCCCCccEEEccCCCCCCCc
Q 037325 181 LEWLSGLSSLVYFNLGGADLSK---AGAYWLEVFNKLH-SFVELHLPNCNLPSLPLSFPSLNFASLQVLDLSNNDFNSTT 256 (598)
Q Consensus 181 ~~~~~~l~~L~~L~l~~n~~~~---~~~~~~~~~~~l~-~L~~L~l~~~~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~ 256 (598)
...|.++++|+.|.+..+.... ....++..+..++ +|+.|++.++.+..+|..+ ...+|++|++.+|++. .+
T Consensus 551 ~~aF~~m~~L~~L~~~~~~~~~~~~~~~~lp~~~~~lp~~Lr~L~~~~~~l~~lP~~f---~~~~L~~L~L~~s~l~-~L 626 (1153)
T PLN03210 551 ENAFKGMRNLLFLKFYTKKWDQKKEVRWHLPEGFDYLPPKLRLLRWDKYPLRCMPSNF---RPENLVKLQMQGSKLE-KL 626 (1153)
T ss_pred HHHHhcCccccEEEEecccccccccceeecCcchhhcCcccEEEEecCCCCCCCCCcC---CccCCcEEECcCcccc-cc
Confidence 3457777777777776543221 1111244555554 6888888888888887633 3578889999988876 45
Q ss_pred chhhhcCCCCCEEEccCCcccccCCccccCCCCccEEECcCCCcCccccchhhcCCCCCCEEecccccCCcccchhhhCC
Q 037325 257 PHWLFNITSLLCLDLGSNDLQGDIPDGFASLNSLQELDLSGNSFLGGQLSRNLGKLCNLRTMILSRNNISSEVSDFLDGL 336 (598)
Q Consensus 257 ~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l 336 (598)
+..+..+++|+.|+++++.....+|. +..+++|++|++++|. ....+|..+..+++|+.|++++|...+..|..+ .+
T Consensus 627 ~~~~~~l~~Lk~L~Ls~~~~l~~ip~-ls~l~~Le~L~L~~c~-~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~i-~l 703 (1153)
T PLN03210 627 WDGVHSLTGLRNIDLRGSKNLKEIPD-LSMATNLETLKLSDCS-SLVELPSSIQYLNKLEDLDMSRCENLEILPTGI-NL 703 (1153)
T ss_pred ccccccCCCCCEEECCCCCCcCcCCc-cccCCcccEEEecCCC-CccccchhhhccCCCCEEeCCCCCCcCccCCcC-CC
Confidence 66677888899999988765556664 7778889999998887 456778888888999999998876555555433 33
Q ss_pred CCCCCCCCccEEEccCccccccCccccCCCCCCCEEEccCCcCCccchhhccCCCCCCEEeCcCCcCCcc---cCCCchh
Q 037325 337 SECTNSILLEKLELRFNQFTGILPISLGSLKNLRHLVLWQNSFLGSIPPSIGNLTLLKELYLASNQMNGQ---KISDSYQ 413 (598)
Q Consensus 337 ~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~ls~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~---~~~~~~~ 413 (598)
. +|+.|++++|...+.+|.. ..+|+.|++++|.+. .+|..+ .+++|++|++.++..... ..+....
T Consensus 704 ~------sL~~L~Lsgc~~L~~~p~~---~~nL~~L~L~~n~i~-~lP~~~-~l~~L~~L~l~~~~~~~l~~~~~~l~~~ 772 (1153)
T PLN03210 704 K------SLYRLNLSGCSRLKSFPDI---STNISWLDLDETAIE-EFPSNL-RLENLDELILCEMKSEKLWERVQPLTPL 772 (1153)
T ss_pred C------CCCEEeCCCCCCccccccc---cCCcCeeecCCCccc-cccccc-cccccccccccccchhhccccccccchh
Confidence 3 7889999888665555532 467888999988876 566544 577888888876432111 0000001
Q ss_pred hhcCCCCCCEEEccCccCccccchHHHhcCCCCCEEEccCCcCcccCCCCcccCCCCEEEcccCcCcccCCCCCcCCcEE
Q 037325 414 HLKNQTELRTLVLNKARISDTISDWFWQLSLTLDELDVAYNELRGRVPNSLGFNFPAKVDLSFNNFEGRLLLWSFNVTKL 493 (598)
Q Consensus 414 ~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~ls~n~~~~~~p~~~~~~~L~~l~ls~n~l~~~~~~~~~~L~~L 493 (598)
....+++|+.|++++|...+.+|..+.. +++|+.|++++|...+.+|.......|+.|++++|.....+|....+|+.|
T Consensus 773 ~~~~~~sL~~L~Ls~n~~l~~lP~si~~-L~~L~~L~Ls~C~~L~~LP~~~~L~sL~~L~Ls~c~~L~~~p~~~~nL~~L 851 (1153)
T PLN03210 773 MTMLSPSLTRLFLSDIPSLVELPSSIQN-LHKLEHLEIENCINLETLPTGINLESLESLDLSGCSRLRTFPDISTNISDL 851 (1153)
T ss_pred hhhccccchheeCCCCCCccccChhhhC-CCCCCEEECCCCCCcCeeCCCCCccccCEEECCCCCccccccccccccCEe
Confidence 1233568899999998877778887765 788999999988766677776644478888888887767777777788888
Q ss_pred EccCCcccccCCchhhcccCCCCCccccCCCCeEeCcCCccccccchhccCCCCCCEEECCCCc
Q 037325 494 YLRDNSFSGLIPNDIGQNLPFLTDLGNLKQLITLVISNNNLSGEIPLLFSNISFLYILDMSNNS 557 (598)
Q Consensus 494 ~ls~n~l~~~~p~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ls~N~ 557 (598)
++++|.++ .+|..+.. +++|+.|++++|+--..+|..+..+++|+.+++++|.
T Consensus 852 ~Ls~n~i~-~iP~si~~----------l~~L~~L~L~~C~~L~~l~~~~~~L~~L~~L~l~~C~ 904 (1153)
T PLN03210 852 NLSRTGIE-EVPWWIEK----------FSNLSFLDMNGCNNLQRVSLNISKLKHLETVDFSDCG 904 (1153)
T ss_pred ECCCCCCc-cChHHHhc----------CCCCCEEECCCCCCcCccCcccccccCCCeeecCCCc
Confidence 88888887 67877766 7888888888754333677778888888888888884
|
syringae 6; Provisional |
| >KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.90 E-value=2.2e-25 Score=208.95 Aligned_cols=412 Identities=21% Similarity=0.210 Sum_probs=243.2
Q ss_pred CCEEeCCCCCCCCCCcchhccCCCCCCEEECcCCCCCcccchhccCCCCCCEEEccC-CCCCCCccChhhhcCCCCCcEE
Q 037325 115 LEYLDLSMNNFTGFQVPEFIGSLKELRYLNLSGSFFSGTIPQTLGNLSNLLYLDLNN-FLDQSNQIDLEWLSGLSSLVYF 193 (598)
Q Consensus 115 L~~L~Ls~n~l~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~-n~~~~~~~~~~~~~~l~~L~~L 193 (598)
-..++|..|.|+.+ .|..|..+++|+.|||++|+|+..-|.+|..+++|.+|.+.+ |.+ .......|.++..++.|
T Consensus 69 tveirLdqN~I~~i-P~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI--~~l~k~~F~gL~slqrL 145 (498)
T KOG4237|consen 69 TVEIRLDQNQISSI-PPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKI--TDLPKGAFGGLSSLQRL 145 (498)
T ss_pred ceEEEeccCCcccC-ChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCch--hhhhhhHhhhHHHHHHH
Confidence 34566666666644 444566666666666666666656666666666666655554 332 22223457777777777
Q ss_pred EcCCCCCCCCcccchHhhhcCCCCCEEEcCCCCCCCCCCCCCcCCCCCccEEEccCCCCCC------------Ccchhhh
Q 037325 194 NLGGADLSKAGAYWLEVFNKLHSFVELHLPNCNLPSLPLSFPSLNFASLQVLDLSNNDFNS------------TTPHWLF 261 (598)
Q Consensus 194 ~l~~n~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~L~~L~L~~n~l~~------------~~~~~l~ 261 (598)
.+.-|++.-.. .+.|..+++|..|.+.+|.+..+.. ..+..+.+++.+.+..|.+.. ..|..++
T Consensus 146 llNan~i~Cir---~~al~dL~~l~lLslyDn~~q~i~~-~tf~~l~~i~tlhlA~np~icdCnL~wla~~~a~~~iets 221 (498)
T KOG4237|consen 146 LLNANHINCIR---QDALRDLPSLSLLSLYDNKIQSICK-GTFQGLAAIKTLHLAQNPFICDCNLPWLADDLAMNPIETS 221 (498)
T ss_pred hcChhhhcchh---HHHHHHhhhcchhcccchhhhhhcc-ccccchhccchHhhhcCccccccccchhhhHHhhchhhcc
Confidence 77777777665 6788888999999999998887776 566677888888888876321 1111112
Q ss_pred cCCCCCEEEccCCcccccCCccccCC-CCccEEECcCCCcCccccchhhcCCCCCCEEecccccCCcccchhhhCCCCCC
Q 037325 262 NITSLLCLDLGSNDLQGDIPDGFASL-NSLQELDLSGNSFLGGQLSRNLGKLCNLRTMILSRNNISSEVSDFLDGLSECT 340 (598)
Q Consensus 262 ~l~~L~~L~l~~n~l~~~~~~~l~~l-~~L~~L~l~~n~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~~~ 340 (598)
...-..-..+.+.++....+..+... ..+.+=-.+.+..........|..+++|++|++++|++++..+.+|.+..
T Consensus 222 garc~~p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~i~~i~~~aFe~~a--- 298 (498)
T KOG4237|consen 222 GARCVSPYRLYYKRINQEDARKFLCSLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNNKITRIEDGAFEGAA--- 298 (498)
T ss_pred cceecchHHHHHHHhcccchhhhhhhHHhHHHhhccccCcCCcChHHHHhhcccceEeccCCCccchhhhhhhcchh---
Confidence 22222222233333332222222211 12211112222212333335688889999999999999988888888887
Q ss_pred CCCCccEEEccCccccccCccccCCCCCCCEEEccCCcCCccchhhccCCCCCCEEeCcCCcCCcccCCCchhhhcCCCC
Q 037325 341 NSILLEKLELRFNQFTGILPISLGSLKNLRHLVLWQNSFLGSIPPSIGNLTLLKELYLASNQMNGQKISDSYQHLKNQTE 420 (598)
Q Consensus 341 ~~~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~ls~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~~~~ 420 (598)
.+++|.+..|++...-...|.++..|+.|++++|+++...|.+|..+.+|.+|++-.|.+...- . +.|+...
T Consensus 299 ---~l~eL~L~~N~l~~v~~~~f~~ls~L~tL~L~~N~it~~~~~aF~~~~~l~~l~l~~Np~~CnC-~--l~wl~~W-- 370 (498)
T KOG4237|consen 299 ---ELQELYLTRNKLEFVSSGMFQGLSGLKTLSLYDNQITTVAPGAFQTLFSLSTLNLLSNPFNCNC-R--LAWLGEW-- 370 (498)
T ss_pred ---hhhhhhcCcchHHHHHHHhhhccccceeeeecCCeeEEEecccccccceeeeeehccCcccCcc-c--hHHHHHH--
Confidence 7899999999887666667788888999999999998888888888888999998888765322 1 1111110
Q ss_pred CCEEEccCccCccccchHHHhcCCCCCEEEccCCcCcc---cCCCCcccCCCCEEEcccCcCcccCCCCCcCCcEE-Ecc
Q 037325 421 LRTLVLNKARISDTISDWFWQLSLTLDELDVAYNELRG---RVPNSLGFNFPAKVDLSFNNFEGRLLLWSFNVTKL-YLR 496 (598)
Q Consensus 421 L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~ls~n~~~~---~~p~~~~~~~L~~l~ls~n~l~~~~~~~~~~L~~L-~ls 496 (598)
+.+....|. |.+ +....++.+++++..+.. ..|++.+ +.-++..|...+.+.+. .-|
T Consensus 371 -----lr~~~~~~~-~~C--q~p~~~~~~~~~dv~~~~~~c~~~ee~~-----------~~~s~~cP~~c~c~~tVvRcS 431 (498)
T KOG4237|consen 371 -----LRKKSVVGN-PRC--QSPGFVRQIPISDVAFGDFRCGGPEELG-----------CLTSSPCPPPCTCLDTVVRCS 431 (498)
T ss_pred -----HhhCCCCCC-CCC--CCCchhccccchhccccccccCCccccC-----------CCCCCCCCCCcchhhhhHhhc
Confidence 111111111 111 112345566666654432 1222211 11122333333333332 233
Q ss_pred CCcccccCCchhhcccCCCCCccccCCCCeEeCcCCccccccchhccCCCCCCEEECCCCcCccccchhccCCCCCCEEE
Q 037325 497 DNSFSGLIPNDIGQNLPFLTDLGNLKQLITLVISNNNLSGEIPLLFSNISFLYILDMSNNSLSGSTPESIGSLRTVKFLV 576 (598)
Q Consensus 497 ~n~l~~~~p~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~l~~l~~L~~L~ 576 (598)
+..+. .+|..+- ...+.|++.+|.++ .+|.. .+.+| .+|+++|+++..--..|.++++|.+|-
T Consensus 432 nk~lk-~lp~~iP------------~d~telyl~gn~~~-~vp~~--~~~~l-~~dls~n~i~~Lsn~tf~n~tql~tli 494 (498)
T KOG4237|consen 432 NKLLK-LLPRGIP------------VDVTELYLDGNAIT-SVPDE--LLRSL-LLDLSNNRISSLSNYTFSNMTQLSTLI 494 (498)
T ss_pred ccchh-hcCCCCC------------chhHHHhcccchhc-ccCHH--HHhhh-hcccccCceehhhcccccchhhhheeE
Confidence 33333 5555542 34566777777777 66665 55666 677777777644455667777777777
Q ss_pred ccCC
Q 037325 577 LRNN 580 (598)
Q Consensus 577 l~~n 580 (598)
+++|
T Consensus 495 lsyn 498 (498)
T KOG4237|consen 495 LSYN 498 (498)
T ss_pred EecC
Confidence 7665
|
|
| >PLN03210 Resistant to P | Back alignment and domain information |
|---|
Probab=99.89 E-value=1.1e-21 Score=225.03 Aligned_cols=338 Identities=20% Similarity=0.183 Sum_probs=264.4
Q ss_pred hHhhhcCCCCCEEEcCCCCCCC------CCCCCCcCCC-CCccEEEccCCCCCCCcchhhhcCCCCCEEEccCCcccccC
Q 037325 208 LEVFNKLHSFVELHLPNCNLPS------LPLSFPSLNF-ASLQVLDLSNNDFNSTTPHWLFNITSLLCLDLGSNDLQGDI 280 (598)
Q Consensus 208 ~~~~~~l~~L~~L~l~~~~l~~------~~~~~~~~~l-~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~ 280 (598)
...|..+++|+.|.+..+.... ..+ ..+..+ .+|+.|++.++.+. .+|..+ ...+|+.|++.+|.+. .+
T Consensus 551 ~~aF~~m~~L~~L~~~~~~~~~~~~~~~~lp-~~~~~lp~~Lr~L~~~~~~l~-~lP~~f-~~~~L~~L~L~~s~l~-~L 626 (1153)
T PLN03210 551 ENAFKGMRNLLFLKFYTKKWDQKKEVRWHLP-EGFDYLPPKLRLLRWDKYPLR-CMPSNF-RPENLVKLQMQGSKLE-KL 626 (1153)
T ss_pred HHHHhcCccccEEEEecccccccccceeecC-cchhhcCcccEEEEecCCCCC-CCCCcC-CccCCcEEECcCcccc-cc
Confidence 5678999999999997664321 111 222233 46999999999876 556655 5689999999999987 57
Q ss_pred CccccCCCCccEEECcCCCcCccccchhhcCCCCCCEEecccccCCcccchhhhCCCCCCCCCCccEEEccCccccccCc
Q 037325 281 PDGFASLNSLQELDLSGNSFLGGQLSRNLGKLCNLRTMILSRNNISSEVSDFLDGLSECTNSILLEKLELRFNQFTGILP 360 (598)
Q Consensus 281 ~~~l~~l~~L~~L~l~~n~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~~~~~~~L~~L~Ls~n~l~~~~~ 360 (598)
+..+..+++|+.|+++++. ....+|. +..+++|+.|++++|......|..+..+. +|+.|++++|...+.+|
T Consensus 627 ~~~~~~l~~Lk~L~Ls~~~-~l~~ip~-ls~l~~Le~L~L~~c~~L~~lp~si~~L~------~L~~L~L~~c~~L~~Lp 698 (1153)
T PLN03210 627 WDGVHSLTGLRNIDLRGSK-NLKEIPD-LSMATNLETLKLSDCSSLVELPSSIQYLN------KLEDLDMSRCENLEILP 698 (1153)
T ss_pred ccccccCCCCCEEECCCCC-CcCcCCc-cccCCcccEEEecCCCCccccchhhhccC------CCCEEeCCCCCCcCccC
Confidence 7778889999999999886 3355564 78899999999999987778888888777 89999999986666777
Q ss_pred cccCCCCCCCEEEccCCcCCccchhhccCCCCCCEEeCcCCcCCcccCCCchhhhcCCCCCCEEEccCccCc---c---c
Q 037325 361 ISLGSLKNLRHLVLWQNSFLGSIPPSIGNLTLLKELYLASNQMNGQKISDSYQHLKNQTELRTLVLNKARIS---D---T 434 (598)
Q Consensus 361 ~~l~~l~~L~~L~ls~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~~~~L~~L~l~~n~l~---~---~ 434 (598)
..+ ++++|+.|++++|...+.+|.. ..+|++|++++|.+... |.. ..+++|+.|.+.++... + .
T Consensus 699 ~~i-~l~sL~~L~Lsgc~~L~~~p~~---~~nL~~L~L~~n~i~~l--P~~----~~l~~L~~L~l~~~~~~~l~~~~~~ 768 (1153)
T PLN03210 699 TGI-NLKSLYRLNLSGCSRLKSFPDI---STNISWLDLDETAIEEF--PSN----LRLENLDELILCEMKSEKLWERVQP 768 (1153)
T ss_pred CcC-CCCCCCEEeCCCCCCccccccc---cCCcCeeecCCCccccc--ccc----ccccccccccccccchhhccccccc
Confidence 655 7899999999999776666643 46899999999998654 332 25678888888774321 1 1
Q ss_pred cchHHHhcCCCCCEEEccCCcCcccCCCCcccC-CCCEEEcccCcCcccCCCC--CcCCcEEEccCCcccccCCchhhcc
Q 037325 435 ISDWFWQLSLTLDELDVAYNELRGRVPNSLGFN-FPAKVDLSFNNFEGRLLLW--SFNVTKLYLRDNSFSGLIPNDIGQN 511 (598)
Q Consensus 435 ~~~~~~~~~~~L~~L~ls~n~~~~~~p~~~~~~-~L~~l~ls~n~l~~~~~~~--~~~L~~L~ls~n~l~~~~p~~~~~~ 511 (598)
.+......+++|++|++++|...+.+|..+... .|+.|++++|...+.+|.. +++|+.|++++|.....+|..
T Consensus 769 l~~~~~~~~~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~~L~sL~~L~Ls~c~~L~~~p~~---- 844 (1153)
T PLN03210 769 LTPLMTMLSPSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPTGINLESLESLDLSGCSRLRTFPDI---- 844 (1153)
T ss_pred cchhhhhccccchheeCCCCCCccccChhhhCCCCCCEEECCCCCCcCeeCCCCCccccCEEECCCCCcccccccc----
Confidence 122223336789999999999888899988876 8999999998766677764 689999999998755455532
Q ss_pred cCCCCCccccCCCCeEeCcCCccccccchhccCCCCCCEEECCCCcCccccchhccCCCCCCEEEccCCC
Q 037325 512 LPFLTDLGNLKQLITLVISNNNLSGEIPLLFSNISFLYILDMSNNSLSGSTPESIGSLRTVKFLVLRNNY 581 (598)
Q Consensus 512 ~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~l~~l~~L~~L~l~~n~ 581 (598)
.++|+.|+|++|.++ .+|.++.++++|++|++++|.--..+|..+..+++|+.+++++|.
T Consensus 845 ---------~~nL~~L~Ls~n~i~-~iP~si~~l~~L~~L~L~~C~~L~~l~~~~~~L~~L~~L~l~~C~ 904 (1153)
T PLN03210 845 ---------STNISDLNLSRTGIE-EVPWWIEKFSNLSFLDMNGCNNLQRVSLNISKLKHLETVDFSDCG 904 (1153)
T ss_pred ---------ccccCEeECCCCCCc-cChHHHhcCCCCCEEECCCCCCcCccCcccccccCCCeeecCCCc
Confidence 468999999999998 899999999999999999964434688888999999999999985
|
syringae 6; Provisional |
| >PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=1.3e-22 Score=216.02 Aligned_cols=264 Identities=22% Similarity=0.262 Sum_probs=155.1
Q ss_pred CccEEEccCCCCCCCcchhhhcCCCCCEEEccCCcccccCCccccCCCCccEEECcCCCcCccccchhhcCCCCCCEEec
Q 037325 241 SLQVLDLSNNDFNSTTPHWLFNITSLLCLDLGSNDLQGDIPDGFASLNSLQELDLSGNSFLGGQLSRNLGKLCNLRTMIL 320 (598)
Q Consensus 241 ~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~l~~l~~L~~L~l 320 (598)
.-..|+++.+.++ .+|..+. ++|+.|++.+|+++ .+|. .+++|++|++++|++ . .+|.. .++|+.|++
T Consensus 202 ~~~~LdLs~~~Lt-sLP~~l~--~~L~~L~L~~N~Lt-~LP~---lp~~Lk~LdLs~N~L-t-sLP~l---p~sL~~L~L 269 (788)
T PRK15387 202 GNAVLNVGESGLT-TLPDCLP--AHITTLVIPDNNLT-SLPA---LPPELRTLEVSGNQL-T-SLPVL---PPGLLELSI 269 (788)
T ss_pred CCcEEEcCCCCCC-cCCcchh--cCCCEEEccCCcCC-CCCC---CCCCCcEEEecCCcc-C-cccCc---ccccceeec
Confidence 4567888888887 4565554 46888888888877 3554 246788888888874 3 33432 356777777
Q ss_pred ccccCCcccchhhhCCCCCCCCCCccEEEccCccccccCccccCCCCCCCEEEccCCcCCccchhhccCCCCCCEEeCcC
Q 037325 321 SRNNISSEVSDFLDGLSECTNSILLEKLELRFNQFTGILPISLGSLKNLRHLVLWQNSFLGSIPPSIGNLTLLKELYLAS 400 (598)
Q Consensus 321 ~~n~l~~~~~~~~~~l~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~ls~n~l~~~~~~~l~~l~~L~~L~l~~ 400 (598)
++|.+.... ..+ . +|+.|++++|+++. +|. ..++|+.|++++|++++ +|.. ..+|+.|++++
T Consensus 270 s~N~L~~Lp-~lp---~------~L~~L~Ls~N~Lt~-LP~---~p~~L~~LdLS~N~L~~-Lp~l---p~~L~~L~Ls~ 331 (788)
T PRK15387 270 FSNPLTHLP-ALP---S------GLCKLWIFGNQLTS-LPV---LPPGLQELSVSDNQLAS-LPAL---PSELCKLWAYN 331 (788)
T ss_pred cCCchhhhh-hch---h------hcCEEECcCCcccc-ccc---cccccceeECCCCcccc-CCCC---ccccccccccc
Confidence 777665322 111 1 57777777777763 443 23567777777777763 3331 23566677777
Q ss_pred CcCCcccCCCchhhhcCCCCCCEEEccCccCccccchHHHhcCCCCCEEEccCCcCcccCCCCcccCCCCEEEcccCcCc
Q 037325 401 NQMNGQKISDSYQHLKNQTELRTLVLNKARISDTISDWFWQLSLTLDELDVAYNELRGRVPNSLGFNFPAKVDLSFNNFE 480 (598)
Q Consensus 401 n~l~~~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~ls~n~~~~~~p~~~~~~~L~~l~ls~n~l~ 480 (598)
|.+++. |. ...+|+.|++++|++++. |.. ...|..|++++|++++ +|... ..|+.|++++|+++
T Consensus 332 N~L~~L--P~------lp~~Lq~LdLS~N~Ls~L-P~l----p~~L~~L~Ls~N~L~~-LP~l~--~~L~~LdLs~N~Lt 395 (788)
T PRK15387 332 NQLTSL--PT------LPSGLQELSVSDNQLASL-PTL----PSELYKLWAYNNRLTS-LPALP--SGLKELIVSGNRLT 395 (788)
T ss_pred Cccccc--cc------cccccceEecCCCccCCC-CCC----Ccccceehhhcccccc-Ccccc--cccceEEecCCccc
Confidence 776643 21 113567777777776642 221 3456666677666663 44321 24566666666665
Q ss_pred ccCCCCCcCCcEEEccCCcccccCCchhhcccCCCCCccccCCCCeEeCcCCccccccchhccCCCCCCEEECCCCcCcc
Q 037325 481 GRLLLWSFNVTKLYLRDNSFSGLIPNDIGQNLPFLTDLGNLKQLITLVISNNNLSGEIPLLFSNISFLYILDMSNNSLSG 560 (598)
Q Consensus 481 ~~~~~~~~~L~~L~ls~n~l~~~~p~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ls~N~l~~ 560 (598)
+ +|...++|+.|++++|+++ .+|.. ..+|+.|++++|+++ .+|..+.++++|+.|+|++|.+++
T Consensus 396 ~-LP~l~s~L~~LdLS~N~Ls-sIP~l-------------~~~L~~L~Ls~NqLt-~LP~sl~~L~~L~~LdLs~N~Ls~ 459 (788)
T PRK15387 396 S-LPVLPSELKELMVSGNRLT-SLPML-------------PSGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSE 459 (788)
T ss_pred C-CCCcccCCCEEEccCCcCC-CCCcc-------------hhhhhhhhhccCccc-ccChHHhhccCCCeEECCCCCCCc
Confidence 3 4444455666666666665 34432 234555666666665 556666666666666666666666
Q ss_pred ccchhc
Q 037325 561 STPESI 566 (598)
Q Consensus 561 ~~p~~l 566 (598)
..|..+
T Consensus 460 ~~~~~L 465 (788)
T PRK15387 460 RTLQAL 465 (788)
T ss_pred hHHHHH
Confidence 555554
|
|
| >PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional | Back alignment and domain information |
|---|
Probab=99.88 E-value=1.1e-21 Score=209.05 Aligned_cols=266 Identities=23% Similarity=0.258 Sum_probs=172.6
Q ss_pred CCCCEEEcCCCCCCCCCCCCCcCCCCCccEEEccCCCCCCCcchhhhcCCCCCEEEccCCcccccCCccccCCCCccEEE
Q 037325 215 HSFVELHLPNCNLPSLPLSFPSLNFASLQVLDLSNNDFNSTTPHWLFNITSLLCLDLGSNDLQGDIPDGFASLNSLQELD 294 (598)
Q Consensus 215 ~~L~~L~l~~~~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~ 294 (598)
..-..|+++++.++.+|... . ++|+.|++.+|+++. +|. .+++|++|++++|+++ .+|.. .++|+.|+
T Consensus 201 ~~~~~LdLs~~~LtsLP~~l--~--~~L~~L~L~~N~Lt~-LP~---lp~~Lk~LdLs~N~Lt-sLP~l---p~sL~~L~ 268 (788)
T PRK15387 201 NGNAVLNVGESGLTTLPDCL--P--AHITTLVIPDNNLTS-LPA---LPPELRTLEVSGNQLT-SLPVL---PPGLLELS 268 (788)
T ss_pred CCCcEEEcCCCCCCcCCcch--h--cCCCEEEccCCcCCC-CCC---CCCCCcEEEecCCccC-cccCc---ccccceee
Confidence 34567778888777766522 1 467788888887774 443 2467788888888777 34532 35677788
Q ss_pred CcCCCcCccccchhhcCCCCCCEEecccccCCcccchhhhCCCCCCCCCCccEEEccCccccccCccccCCCCCCCEEEc
Q 037325 295 LSGNSFLGGQLSRNLGKLCNLRTMILSRNNISSEVSDFLDGLSECTNSILLEKLELRFNQFTGILPISLGSLKNLRHLVL 374 (598)
Q Consensus 295 l~~n~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~l 374 (598)
+.+|.+ . .+|.. .++|+.|++++|+++... .. .+ +|+.|++++|++++ +|.. ..+|+.|++
T Consensus 269 Ls~N~L-~-~Lp~l---p~~L~~L~Ls~N~Lt~LP-~~---p~------~L~~LdLS~N~L~~-Lp~l---p~~L~~L~L 329 (788)
T PRK15387 269 IFSNPL-T-HLPAL---PSGLCKLWIFGNQLTSLP-VL---PP------GLQELSVSDNQLAS-LPAL---PSELCKLWA 329 (788)
T ss_pred ccCCch-h-hhhhc---hhhcCEEECcCCcccccc-cc---cc------ccceeECCCCcccc-CCCC---ccccccccc
Confidence 887773 2 33432 246777788877776432 11 12 67788888887774 3432 245677777
Q ss_pred cCCcCCccchhhccCCCCCCEEeCcCCcCCcccCCCchhhhcCCCCCCEEEccCccCccccchHHHhcCCCCCEEEccCC
Q 037325 375 WQNSFLGSIPPSIGNLTLLKELYLASNQMNGQKISDSYQHLKNQTELRTLVLNKARISDTISDWFWQLSLTLDELDVAYN 454 (598)
Q Consensus 375 s~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~ls~n 454 (598)
++|+++ .+|. -..+|+.|++++|++++. |. ..++|+.|++++|++++ +|.. ..+|+.|++++|
T Consensus 330 s~N~L~-~LP~---lp~~Lq~LdLS~N~Ls~L--P~------lp~~L~~L~Ls~N~L~~-LP~l----~~~L~~LdLs~N 392 (788)
T PRK15387 330 YNNQLT-SLPT---LPSGLQELSVSDNQLASL--PT------LPSELYKLWAYNNRLTS-LPAL----PSGLKELIVSGN 392 (788)
T ss_pred ccCccc-cccc---cccccceEecCCCccCCC--CC------CCcccceehhhcccccc-Cccc----ccccceEEecCC
Confidence 777776 3443 124677888888877753 22 12457777788887774 3432 346778888888
Q ss_pred cCcccCCCCcccCCCCEEEcccCcCcccCCCCCcCCcEEEccCCcccccCCchhhcccCCCCCccccCCCCeEeCcCCcc
Q 037325 455 ELRGRVPNSLGFNFPAKVDLSFNNFEGRLLLWSFNVTKLYLRDNSFSGLIPNDIGQNLPFLTDLGNLKQLITLVISNNNL 534 (598)
Q Consensus 455 ~~~~~~p~~~~~~~L~~l~ls~n~l~~~~~~~~~~L~~L~ls~n~l~~~~p~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l 534 (598)
++++ +|... ..++.|++++|++++ +|..+.+|+.|++++|+++ .+|..++. ++.|+.|+|++|++
T Consensus 393 ~Lt~-LP~l~--s~L~~LdLS~N~Lss-IP~l~~~L~~L~Ls~NqLt-~LP~sl~~----------L~~L~~LdLs~N~L 457 (788)
T PRK15387 393 RLTS-LPVLP--SELKELMVSGNRLTS-LPMLPSGLLSLSVYRNQLT-RLPESLIH----------LSSETTVNLEGNPL 457 (788)
T ss_pred cccC-CCCcc--cCCCEEEccCCcCCC-CCcchhhhhhhhhccCccc-ccChHHhh----------ccCCCeEECCCCCC
Confidence 7774 44322 257778888888774 5655667777888888877 67777766 77788888888888
Q ss_pred ccccchhcc
Q 037325 535 SGEIPLLFS 543 (598)
Q Consensus 535 ~~~~p~~~~ 543 (598)
++.+|..+.
T Consensus 458 s~~~~~~L~ 466 (788)
T PRK15387 458 SERTLQALR 466 (788)
T ss_pred CchHHHHHH
Confidence 877776653
|
|
| >KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.83 E-value=1.1e-22 Score=190.80 Aligned_cols=401 Identities=24% Similarity=0.211 Sum_probs=264.3
Q ss_pred CCCCEEECcCCCCCcccchhccCCCCCCEEEccCCCCCCCccChhhhcCCCCCcEEEcCCCCCCCCcccchHhhhcCCCC
Q 037325 138 KELRYLNLSGSFFSGTIPQTLGNLSNLLYLDLNNFLDQSNQIDLEWLSGLSSLVYFNLGGADLSKAGAYWLEVFNKLHSF 217 (598)
Q Consensus 138 ~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~l~~L 217 (598)
+.-..++|..|+|+...|..|+.+++|+.|||++ |.++.+. ++.|.++.+|
T Consensus 67 ~~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~--------------------------N~Is~I~---p~AF~GL~~l 117 (498)
T KOG4237|consen 67 PETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSK--------------------------NNISFIA---PDAFKGLASL 117 (498)
T ss_pred CcceEEEeccCCcccCChhhccchhhhceecccc--------------------------cchhhcC---hHhhhhhHhh
Confidence 3456788999999844445566666666666555 4555554 6778888887
Q ss_pred CEEEcCC-CCCCCCCCCCCcCCCCCccEEEccCCCCCCCcchhhhcCCCCCEEEccCCcccccCCc-cccCCCCccEEEC
Q 037325 218 VELHLPN-CNLPSLPLSFPSLNFASLQVLDLSNNDFNSTTPHWLFNITSLLCLDLGSNDLQGDIPD-GFASLNSLQELDL 295 (598)
Q Consensus 218 ~~L~l~~-~~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~-~l~~l~~L~~L~l 295 (598)
.+|.+.+ |+|++++. ..+.++.+++.|.+.-|++.-...+.+..++++..|.+.+|.+. .++. .+..+..++.+.+
T Consensus 118 ~~Lvlyg~NkI~~l~k-~~F~gL~slqrLllNan~i~Cir~~al~dL~~l~lLslyDn~~q-~i~~~tf~~l~~i~tlhl 195 (498)
T KOG4237|consen 118 LSLVLYGNNKITDLPK-GAFGGLSSLQRLLLNANHINCIRQDALRDLPSLSLLSLYDNKIQ-SICKGTFQGLAAIKTLHL 195 (498)
T ss_pred hHHHhhcCCchhhhhh-hHhhhHHHHHHHhcChhhhcchhHHHHHHhhhcchhcccchhhh-hhccccccchhccchHhh
Confidence 7776666 78888877 77888899999999999998888888999999999999999887 4444 7788889999999
Q ss_pred cCCCcCccc-----------cchhhcCCCCCCEEecccccCCcccchhhhCCCCCCCCCCccEE---EccCccccccCcc
Q 037325 296 SGNSFLGGQ-----------LSRNLGKLCNLRTMILSRNNISSEVSDFLDGLSECTNSILLEKL---ELRFNQFTGILPI 361 (598)
Q Consensus 296 ~~n~~~~~~-----------~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~~~~~~~L~~L---~Ls~n~l~~~~~~ 361 (598)
..|+++..- .|..++.........+.+.++..+.+..|.. +++.+ -.+.+...+.-|.
T Consensus 196 A~np~icdCnL~wla~~~a~~~ietsgarc~~p~rl~~~Ri~q~~a~kf~c--------~~esl~s~~~~~d~~d~~cP~ 267 (498)
T KOG4237|consen 196 AQNPFICDCNLPWLADDLAMNPIETSGARCVSPYRLYYKRINQEDARKFLC--------SLESLPSRLSSEDFPDSICPA 267 (498)
T ss_pred hcCccccccccchhhhHHhhchhhcccceecchHHHHHHHhcccchhhhhh--------hHHhHHHhhccccCcCCcChH
Confidence 888843221 2233333444444445555555444433332 22222 1223333334443
Q ss_pred -ccCCCCCCCEEEccCCcCCccchhhccCCCCCCEEeCcCCcCCcccCCCchhhhcCCCCCCEEEccCccCccccchHHH
Q 037325 362 -SLGSLKNLRHLVLWQNSFLGSIPPSIGNLTLLKELYLASNQMNGQKISDSYQHLKNQTELRTLVLNKARISDTISDWFW 440 (598)
Q Consensus 362 -~l~~l~~L~~L~ls~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~ 440 (598)
.|..+++|++|++++|++++.-+.+|.....+++|.+..|++.... . ..+.++..|+.|++.+|+|+...|..|.
T Consensus 268 ~cf~~L~~L~~lnlsnN~i~~i~~~aFe~~a~l~eL~L~~N~l~~v~-~---~~f~~ls~L~tL~L~~N~it~~~~~aF~ 343 (498)
T KOG4237|consen 268 KCFKKLPNLRKLNLSNNKITRIEDGAFEGAAELQELYLTRNKLEFVS-S---GMFQGLSGLKTLSLYDNQITTVAPGAFQ 343 (498)
T ss_pred HHHhhcccceEeccCCCccchhhhhhhcchhhhhhhhcCcchHHHHH-H---HhhhccccceeeeecCCeeEEEeccccc
Confidence 6788999999999999999888888999999999999999886432 1 3477888899999999999988888776
Q ss_pred hcCCCCCEEEccCCcCcccCCCCcccCCCCEE--EcccCcCcccCCCC-CcCCcEEEccCCcccc---cCCchhhcccCC
Q 037325 441 QLSLTLDELDVAYNELRGRVPNSLGFNFPAKV--DLSFNNFEGRLLLW-SFNVTKLYLRDNSFSG---LIPNDIGQNLPF 514 (598)
Q Consensus 441 ~~~~~L~~L~ls~n~~~~~~p~~~~~~~L~~l--~ls~n~l~~~~~~~-~~~L~~L~ls~n~l~~---~~p~~~~~~~~~ 514 (598)
. ...|.+|.+-.|.+... +.+.++ -+..+...|..|.. ...++.++++...+.+ ..|++.+-.. .
T Consensus 344 ~-~~~l~~l~l~~Np~~Cn-------C~l~wl~~Wlr~~~~~~~~~Cq~p~~~~~~~~~dv~~~~~~c~~~ee~~~~~-s 414 (498)
T KOG4237|consen 344 T-LFSLSTLNLLSNPFNCN-------CRLAWLGEWLRKKSVVGNPRCQSPGFVRQIPISDVAFGDFRCGGPEELGCLT-S 414 (498)
T ss_pred c-cceeeeeehccCcccCc-------cchHHHHHHHhhCCCCCCCCCCCCchhccccchhccccccccCCccccCCCC-C
Confidence 5 56889999988877531 111111 12233333444433 3456777777665532 2233222100 0
Q ss_pred CCCccccCCCCeE-eCcCCccccccchhccCCCCCCEEECCCCcCccccchhccCCCCCCEEEccCCCCcccCCcCccCc
Q 037325 515 LTDLGNLKQLITL-VISNNNLSGEIPLLFSNISFLYILDMSNNSLSGSTPESIGSLRTVKFLVLRNNYLSGKLPLSLKNC 593 (598)
Q Consensus 515 ~~~~~~l~~L~~L-~Ls~N~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~l~~l~~L~~L~l~~n~l~g~~P~~~~~~ 593 (598)
-+.=..++-+.+. ..|+..++ .+|..+. ..-.+|.+.+|.++ .+|.+ .+.+| .+|+++|+++----..|.++
T Consensus 415 ~~cP~~c~c~~tVvRcSnk~lk-~lp~~iP--~d~telyl~gn~~~-~vp~~--~~~~l-~~dls~n~i~~Lsn~tf~n~ 487 (498)
T KOG4237|consen 415 SPCPPPCTCLDTVVRCSNKLLK-LLPRGIP--VDVTELYLDGNAIT-SVPDE--LLRSL-LLDLSNNRISSLSNYTFSNM 487 (498)
T ss_pred CCCCCCcchhhhhHhhcccchh-hcCCCCC--chhHHHhcccchhc-ccCHH--HHhhh-hcccccCceehhhcccccch
Confidence 0000223344333 33444444 6666554 45568899999998 78887 67888 99999999985444556666
Q ss_pred CCCC
Q 037325 594 TFQE 597 (598)
Q Consensus 594 ~~L~ 597 (598)
+.|.
T Consensus 488 tql~ 491 (498)
T KOG4237|consen 488 TQLS 491 (498)
T ss_pred hhhh
Confidence 6553
|
|
| >cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily | Back alignment and domain information |
|---|
Probab=99.80 E-value=5.3e-20 Score=184.03 Aligned_cols=289 Identities=24% Similarity=0.290 Sum_probs=139.1
Q ss_pred EEccCCCCC-CCcchhhhcCCCCCEEEccCCccccc----CCccccCCCCccEEECcCCCcCc------cccchhhcCCC
Q 037325 245 LDLSNNDFN-STTPHWLFNITSLLCLDLGSNDLQGD----IPDGFASLNSLQELDLSGNSFLG------GQLSRNLGKLC 313 (598)
Q Consensus 245 L~L~~n~l~-~~~~~~l~~l~~L~~L~l~~n~l~~~----~~~~l~~l~~L~~L~l~~n~~~~------~~~~~~l~~l~ 313 (598)
|+|..+.++ ......+..++.|+.++++++.++.. ++..+...+++++++++++. .. ..++..+..++
T Consensus 3 l~L~~~~l~~~~~~~~~~~l~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~-~~~~~~~~~~~~~~l~~~~ 81 (319)
T cd00116 3 LSLKGELLKTERATELLPKLLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNE-TGRIPRGLQSLLQGLTKGC 81 (319)
T ss_pred cccccCcccccchHHHHHHHhhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccc-cCCcchHHHHHHHHHHhcC
Confidence 445555554 23333444555566666666665422 23334445556666666655 22 11233444555
Q ss_pred CCCEEecccccCCcccchhhhCCCCCCCCCCccEEEccCcccccc----CccccCCC-CCCCEEEccCCcCCccchhhcc
Q 037325 314 NLRTMILSRNNISSEVSDFLDGLSECTNSILLEKLELRFNQFTGI----LPISLGSL-KNLRHLVLWQNSFLGSIPPSIG 388 (598)
Q Consensus 314 ~L~~L~l~~n~l~~~~~~~~~~l~~~~~~~~L~~L~Ls~n~l~~~----~~~~l~~l-~~L~~L~ls~n~l~~~~~~~l~ 388 (598)
+|+.|++++|.+.+..+..+..+... ++|++|++++|++.+. +...+..+ ++|+.|++++|.++
T Consensus 82 ~L~~L~l~~~~~~~~~~~~~~~l~~~---~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~-------- 150 (319)
T cd00116 82 GLQELDLSDNALGPDGCGVLESLLRS---SSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLE-------- 150 (319)
T ss_pred ceeEEEccCCCCChhHHHHHHHHhcc---CcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCC--------
Confidence 66666666665554444444333311 1355555555554421 11222333 44444444444444
Q ss_pred CCCCCCEEeCcCCcCCcccCCCchhhhcCCCCCCEEEccCccCccccchHHHh---cCCCCCEEEccCCcCcccCCCCcc
Q 037325 389 NLTLLKELYLASNQMNGQKISDSYQHLKNQTELRTLVLNKARISDTISDWFWQ---LSLTLDELDVAYNELRGRVPNSLG 465 (598)
Q Consensus 389 ~l~~L~~L~l~~n~l~~~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~---~~~~L~~L~ls~n~~~~~~p~~~~ 465 (598)
+.........+..+++|++|++++|.+++.....+.. ..+.|++|++++|.+++.....+.
T Consensus 151 ----------------~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~ 214 (319)
T cd00116 151 ----------------GASCEALAKALRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALA 214 (319)
T ss_pred ----------------chHHHHHHHHHHhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccChHHHHHHH
Confidence 2211111122333444444555444444322111111 123455555555544322111110
Q ss_pred cCCCCEEEcccCcCcccCCCCCcCCcEEEccCCcccccCCchhhcccCCCCCccccCCCCeEeCcCCcccc----ccchh
Q 037325 466 FNFPAKVDLSFNNFEGRLLLWSFNVTKLYLRDNSFSGLIPNDIGQNLPFLTDLGNLKQLITLVISNNNLSG----EIPLL 541 (598)
Q Consensus 466 ~~~L~~l~ls~n~l~~~~~~~~~~L~~L~ls~n~l~~~~p~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~----~~p~~ 541 (598)
.....+++|++|++++|.+++.....+...+ + ...+.|+.|++++|.++. .+...
T Consensus 215 ----------------~~~~~~~~L~~L~ls~n~l~~~~~~~l~~~~---~--~~~~~L~~L~l~~n~i~~~~~~~l~~~ 273 (319)
T cd00116 215 ----------------ETLASLKSLEVLNLGDNNLTDAGAAALASAL---L--SPNISLLTLSLSCNDITDDGAKDLAEV 273 (319)
T ss_pred ----------------HHhcccCCCCEEecCCCcCchHHHHHHHHHH---h--ccCCCceEEEccCCCCCcHHHHHHHHH
Confidence 0011234566666666666653333332200 0 013678888888888762 34556
Q ss_pred ccCCCCCCEEECCCCcCccc----cchhccCC-CCCCEEEccCCCC
Q 037325 542 FSNISFLYILDMSNNSLSGS----TPESIGSL-RTVKFLVLRNNYL 582 (598)
Q Consensus 542 ~~~l~~L~~L~ls~N~l~~~----~p~~l~~l-~~L~~L~l~~n~l 582 (598)
+..+++|+++++++|.++.. +...+... +.|+++++.+|++
T Consensus 274 ~~~~~~L~~l~l~~N~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 319 (319)
T cd00116 274 LAEKESLLELDLRGNKFGEEGAQLLAESLLEPGNELESLWVKDDSF 319 (319)
T ss_pred HhcCCCccEEECCCCCCcHHHHHHHHHHHhhcCCchhhcccCCCCC
Confidence 66778888888888888754 44444444 6888888888764
|
LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1). |
| >PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional | Back alignment and domain information |
|---|
Probab=99.78 E-value=1.1e-18 Score=187.58 Aligned_cols=246 Identities=22% Similarity=0.281 Sum_probs=172.8
Q ss_pred CCCCEEEccCCcccccCCccccCCCCccEEECcCCCcCccccchhhcCCCCCCEEecccccCCcccchhhhCCCCCCCCC
Q 037325 264 TSLLCLDLGSNDLQGDIPDGFASLNSLQELDLSGNSFLGGQLSRNLGKLCNLRTMILSRNNISSEVSDFLDGLSECTNSI 343 (598)
Q Consensus 264 ~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~~~~~~ 343 (598)
.+...|+++++.++ .+|..+. +.|+.|++++|.+ . .+|..+. ++|+.|++++|+++.. |..+. .
T Consensus 178 ~~~~~L~L~~~~Lt-sLP~~Ip--~~L~~L~Ls~N~L-t-sLP~~l~--~nL~~L~Ls~N~LtsL-P~~l~--~------ 241 (754)
T PRK15370 178 NNKTELRLKILGLT-TIPACIP--EQITTLILDNNEL-K-SLPENLQ--GNIKTLYANSNQLTSI-PATLP--D------ 241 (754)
T ss_pred cCceEEEeCCCCcC-cCCcccc--cCCcEEEecCCCC-C-cCChhhc--cCCCEEECCCCccccC-Chhhh--c------
Confidence 35678999999888 5676553 5799999999984 3 4665553 5899999999988753 43322 1
Q ss_pred CccEEEccCccccccCccccCCCCCCCEEEccCCcCCccchhhccCCCCCCEEeCcCCcCCcccCCCchhhhcCCCCCCE
Q 037325 344 LLEKLELRFNQFTGILPISLGSLKNLRHLVLWQNSFLGSIPPSIGNLTLLKELYLASNQMNGQKISDSYQHLKNQTELRT 423 (598)
Q Consensus 344 ~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~ls~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~~~~L~~ 423 (598)
+|+.|++++|.+. .+|..+. .+|+.|++++|++. .+|..+. ++|+.|++++|+++.. |..+ .+.|+.
T Consensus 242 ~L~~L~Ls~N~L~-~LP~~l~--s~L~~L~Ls~N~L~-~LP~~l~--~sL~~L~Ls~N~Lt~L--P~~l-----p~sL~~ 308 (754)
T PRK15370 242 TIQEMELSINRIT-ELPERLP--SALQSLDLFHNKIS-CLPENLP--EELRYLSVYDNSIRTL--PAHL-----PSGITH 308 (754)
T ss_pred cccEEECcCCccC-cCChhHh--CCCCEEECcCCccC-ccccccC--CCCcEEECCCCccccC--cccc-----hhhHHH
Confidence 6899999999988 5666554 57999999999888 5666553 5899999999988764 3211 246888
Q ss_pred EEccCccCccccchHHHhcCCCCCEEEccCCcCcccCCCCcccCCCCEEEcccCcCcccCCCC-CcCCcEEEccCCcccc
Q 037325 424 LVLNKARISDTISDWFWQLSLTLDELDVAYNELRGRVPNSLGFNFPAKVDLSFNNFEGRLLLW-SFNVTKLYLRDNSFSG 502 (598)
Q Consensus 424 L~l~~n~l~~~~~~~~~~~~~~L~~L~ls~n~~~~~~p~~~~~~~L~~l~ls~n~l~~~~~~~-~~~L~~L~ls~n~l~~ 502 (598)
|++++|+++.. |..+ .++|+.|++++|.+++ +|..+. ..|+.|++++|++.. +|.. .++|+.|++++|+++
T Consensus 309 L~Ls~N~Lt~L-P~~l---~~sL~~L~Ls~N~Lt~-LP~~l~-~sL~~L~Ls~N~L~~-LP~~lp~~L~~LdLs~N~Lt- 380 (754)
T PRK15370 309 LNVQSNSLTAL-PETL---PPGLKTLEAGENALTS-LPASLP-PELQVLDVSKNQITV-LPETLPPTITTLDVSRNALT- 380 (754)
T ss_pred HHhcCCccccC-Cccc---cccceeccccCCcccc-CChhhc-CcccEEECCCCCCCc-CChhhcCCcCEEECCCCcCC-
Confidence 88898888753 4322 3578888888888875 554443 367777888777763 3433 356777777777777
Q ss_pred cCCchhhcccCCCCCccccCCCCeEeCcCCccccccchhc----cCCCCCCEEECCCCcCc
Q 037325 503 LIPNDIGQNLPFLTDLGNLKQLITLVISNNNLSGEIPLLF----SNISFLYILDMSNNSLS 559 (598)
Q Consensus 503 ~~p~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~----~~l~~L~~L~ls~N~l~ 559 (598)
.+|..+. .+|+.|++++|+++ .+|..+ +.++.+..|++.+|.++
T Consensus 381 ~LP~~l~------------~sL~~LdLs~N~L~-~LP~sl~~~~~~~~~l~~L~L~~Npls 428 (754)
T PRK15370 381 NLPENLP------------AALQIMQASRNNLV-RLPESLPHFRGEGPQPTRIIVEYNPFS 428 (754)
T ss_pred CCCHhHH------------HHHHHHhhccCCcc-cCchhHHHHhhcCCCccEEEeeCCCcc
Confidence 5665543 35777777777776 444433 34467777777777776
|
|
| >PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional | Back alignment and domain information |
|---|
Probab=99.78 E-value=8.5e-19 Score=188.38 Aligned_cols=295 Identities=21% Similarity=0.309 Sum_probs=216.1
Q ss_pred CCccEEEccCCCCCCCcchhhhcCCCCCEEEccCCcccccCCccccCCCCccEEECcCCCcCccccchhhcCCCCCCEEe
Q 037325 240 ASLQVLDLSNNDFNSTTPHWLFNITSLLCLDLGSNDLQGDIPDGFASLNSLQELDLSGNSFLGGQLSRNLGKLCNLRTMI 319 (598)
Q Consensus 240 ~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~l~~l~~L~~L~ 319 (598)
.+..+|+++++.++. +|..+ .++++.|++++|.++ .+|..+. ++|++|++++|.+ . .+|..+. ++|+.|+
T Consensus 178 ~~~~~L~L~~~~Lts-LP~~I--p~~L~~L~Ls~N~Lt-sLP~~l~--~nL~~L~Ls~N~L-t-sLP~~l~--~~L~~L~ 247 (754)
T PRK15370 178 NNKTELRLKILGLTT-IPACI--PEQITTLILDNNELK-SLPENLQ--GNIKTLYANSNQL-T-SIPATLP--DTIQEME 247 (754)
T ss_pred cCceEEEeCCCCcCc-CCccc--ccCCcEEEecCCCCC-cCChhhc--cCCCEEECCCCcc-c-cCChhhh--ccccEEE
Confidence 456889999998884 55544 358999999999998 5676554 5899999999984 3 5666553 4799999
Q ss_pred cccccCCcccchhhhCCCCCCCCCCccEEEccCccccccCccccCCCCCCCEEEccCCcCCccchhhccCCCCCCEEeCc
Q 037325 320 LSRNNISSEVSDFLDGLSECTNSILLEKLELRFNQFTGILPISLGSLKNLRHLVLWQNSFLGSIPPSIGNLTLLKELYLA 399 (598)
Q Consensus 320 l~~n~l~~~~~~~~~~l~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~ls~n~l~~~~~~~l~~l~~L~~L~l~ 399 (598)
+++|.+.. +|..+. . +|+.|++++|+++ .+|..+. ++|+.|++++|+++ .+|..+. ++|+.|+++
T Consensus 248 Ls~N~L~~-LP~~l~--s------~L~~L~Ls~N~L~-~LP~~l~--~sL~~L~Ls~N~Lt-~LP~~lp--~sL~~L~Ls 312 (754)
T PRK15370 248 LSINRITE-LPERLP--S------ALQSLDLFHNKIS-CLPENLP--EELRYLSVYDNSIR-TLPAHLP--SGITHLNVQ 312 (754)
T ss_pred CcCCccCc-CChhHh--C------CCCEEECcCCccC-ccccccC--CCCcEEECCCCccc-cCcccch--hhHHHHHhc
Confidence 99999884 444433 2 7999999999998 4676553 58999999999998 4555443 479999999
Q ss_pred CCcCCcccCCCchhhhcCCCCCCEEEccCccCccccchHHHhcCCCCCEEEccCCcCcccCCCCcccCCCCEEEcccCcC
Q 037325 400 SNQMNGQKISDSYQHLKNQTELRTLVLNKARISDTISDWFWQLSLTLDELDVAYNELRGRVPNSLGFNFPAKVDLSFNNF 479 (598)
Q Consensus 400 ~n~l~~~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~ls~n~~~~~~p~~~~~~~L~~l~ls~n~l 479 (598)
+|.++.. |.. -.++|+.|++++|.+++ +|..+ +++|+.|++++|+++ .+|..+. ..|+.|++++|++
T Consensus 313 ~N~Lt~L--P~~-----l~~sL~~L~Ls~N~Lt~-LP~~l---~~sL~~L~Ls~N~L~-~LP~~lp-~~L~~LdLs~N~L 379 (754)
T PRK15370 313 SNSLTAL--PET-----LPPGLKTLEAGENALTS-LPASL---PPELQVLDVSKNQIT-VLPETLP-PTITTLDVSRNAL 379 (754)
T ss_pred CCccccC--Ccc-----ccccceeccccCCcccc-CChhh---cCcccEEECCCCCCC-cCChhhc-CCcCEEECCCCcC
Confidence 9999864 321 23689999999999986 45443 468999999999998 4665443 4799999999999
Q ss_pred cccCCCC-CcCCcEEEccCCcccccCCchhhcccCCCCCccccCCCCeEeCcCCccccccchhccCCCCCCEEECCCCcC
Q 037325 480 EGRLLLW-SFNVTKLYLRDNSFSGLIPNDIGQNLPFLTDLGNLKQLITLVISNNNLSGEIPLLFSNISFLYILDMSNNSL 558 (598)
Q Consensus 480 ~~~~~~~-~~~L~~L~ls~n~l~~~~p~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ls~N~l 558 (598)
.. +|.. ..+|+.|++++|+++ .+|..+..+ ...++.+..|++.+|.++. ..+++|+.| ++.+.+
T Consensus 380 t~-LP~~l~~sL~~LdLs~N~L~-~LP~sl~~~------~~~~~~l~~L~L~~Npls~------~tl~~L~~L-l~s~~~ 444 (754)
T PRK15370 380 TN-LPENLPAALQIMQASRNNLV-RLPESLPHF------RGEGPQPTRIIVEYNPFSE------RTIQNMQRL-MSSVGY 444 (754)
T ss_pred CC-CCHhHHHHHHHHhhccCCcc-cCchhHHHH------hhcCCCccEEEeeCCCccH------HHHHHHHHh-hhcccc
Confidence 85 4544 457999999999998 677665431 1235789999999999982 344555555 455555
Q ss_pred cc-ccchhccCCCCCCEEEccCCCCcccCC
Q 037325 559 SG-STPESIGSLRTVKFLVLRNNYLSGKLP 587 (598)
Q Consensus 559 ~~-~~p~~l~~l~~L~~L~l~~n~l~g~~P 587 (598)
.| .++..++.+++++....-++.+.+.+|
T Consensus 445 ~gp~i~~~~~~~~~l~~~~~l~~a~~~Wl~ 474 (754)
T PRK15370 445 QGPRVLFAMGDFSIVRVTRPLHQAVQGWLT 474 (754)
T ss_pred cCCcccccccccccccccchHHHHHhccCC
Confidence 44 345556666666655545555555444
|
|
| >cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily | Back alignment and domain information |
|---|
Probab=99.75 E-value=4e-19 Score=177.67 Aligned_cols=235 Identities=25% Similarity=0.250 Sum_probs=123.3
Q ss_pred EEEcCCCCCCCCcccchHhhhcCCCCCEEEcCCCCCCCCCCCCCcCCCCCccEEEccCCCCCCCcchhhhcCCCCCEEEc
Q 037325 192 YFNLGGADLSKAGAYWLEVFNKLHSFVELHLPNCNLPSLPLSFPSLNFASLQVLDLSNNDFNSTTPHWLFNITSLLCLDL 271 (598)
Q Consensus 192 ~L~l~~n~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l 271 (598)
.|+|+.+.+.+.. +...+..++.|++++++++.++.... ..++..+...+.++++++
T Consensus 2 ~l~L~~~~l~~~~--~~~~~~~l~~L~~l~l~~~~l~~~~~---------------------~~i~~~l~~~~~l~~l~l 58 (319)
T cd00116 2 QLSLKGELLKTER--ATELLPKLLCLQVLRLEGNTLGEEAA---------------------KALASALRPQPSLKELCL 58 (319)
T ss_pred ccccccCcccccc--hHHHHHHHhhccEEeecCCCCcHHHH---------------------HHHHHHHhhCCCceEEec
Confidence 3556666665332 24445555556666666655533210 012223333444455555
Q ss_pred cCCcccc------cCCccccCCCCccEEECcCCCcCccccchhhcCCCC---CCEEecccccCCcccch----hhhCC-C
Q 037325 272 GSNDLQG------DIPDGFASLNSLQELDLSGNSFLGGQLSRNLGKLCN---LRTMILSRNNISSEVSD----FLDGL-S 337 (598)
Q Consensus 272 ~~n~l~~------~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~l~~l~~---L~~L~l~~n~l~~~~~~----~~~~l-~ 337 (598)
+++.+.+ .++..+..+++|+.|++++|. +....+..+..+.+ |++|++++|++.+.... .+... +
T Consensus 59 ~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~-~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~ 137 (319)
T cd00116 59 SLNETGRIPRGLQSLLQGLTKGCGLQELDLSDNA-LGPDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPP 137 (319)
T ss_pred cccccCCcchHHHHHHHHHHhcCceeEEEccCCC-CChhHHHHHHHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCC
Confidence 4444331 122334455666666666666 33333333433333 77777777766642222 22222 2
Q ss_pred CCCCCCCccEEEccCcccccc----CccccCCCCCCCEEEccCCcCCcc----chhhccCCCCCCEEeCcCCcCCcccCC
Q 037325 338 ECTNSILLEKLELRFNQFTGI----LPISLGSLKNLRHLVLWQNSFLGS----IPPSIGNLTLLKELYLASNQMNGQKIS 409 (598)
Q Consensus 338 ~~~~~~~L~~L~Ls~n~l~~~----~~~~l~~l~~L~~L~ls~n~l~~~----~~~~l~~l~~L~~L~l~~n~l~~~~~~ 409 (598)
+|+.|++++|.+++. ++..+..+++|++|++++|.+.+. ++..+...++|++|++++|.+++....
T Consensus 138 ------~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~ 211 (319)
T cd00116 138 ------ALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGAS 211 (319)
T ss_pred ------CceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccChHHHH
Confidence 678888888877632 233455667788888888877642 333445566788888888877644311
Q ss_pred CchhhhcCCCCCCEEEccCccCccccchHHHhcC----CCCCEEEccCCcC
Q 037325 410 DSYQHLKNQTELRTLVLNKARISDTISDWFWQLS----LTLDELDVAYNEL 456 (598)
Q Consensus 410 ~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~----~~L~~L~ls~n~~ 456 (598)
.....+..+++|++|++++|.+++.....+...+ +.|++|++++|.+
T Consensus 212 ~l~~~~~~~~~L~~L~ls~n~l~~~~~~~l~~~~~~~~~~L~~L~l~~n~i 262 (319)
T cd00116 212 ALAETLASLKSLEVLNLGDNNLTDAGAAALASALLSPNISLLTLSLSCNDI 262 (319)
T ss_pred HHHHHhcccCCCCEEecCCCcCchHHHHHHHHHHhccCCCceEEEccCCCC
Confidence 1223345566777777777776654433333221 3444444444443
|
LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1). |
| >KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.60 E-value=1e-17 Score=139.87 Aligned_cols=181 Identities=28% Similarity=0.477 Sum_probs=105.5
Q ss_pred CccEEEccCccccccCccccCCCCCCCEEEccCCcCCccchhhccCCCCCCEEeCcCCcCCcccCCCchhhhcCCCCCCE
Q 037325 344 LLEKLELRFNQFTGILPISLGSLKNLRHLVLWQNSFLGSIPPSIGNLTLLKELYLASNQMNGQKISDSYQHLKNQTELRT 423 (598)
Q Consensus 344 ~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~ls~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~~~~L~~ 423 (598)
.++.|.+++|+++ .+|..+..+.+|+.|++++|++. .+|..++.+++|+.|+++-|++.-
T Consensus 34 ~ITrLtLSHNKl~-~vppnia~l~nlevln~~nnqie-~lp~~issl~klr~lnvgmnrl~~------------------ 93 (264)
T KOG0617|consen 34 NITRLTLSHNKLT-VVPPNIAELKNLEVLNLSNNQIE-ELPTSISSLPKLRILNVGMNRLNI------------------ 93 (264)
T ss_pred hhhhhhcccCcee-ecCCcHHHhhhhhhhhcccchhh-hcChhhhhchhhhheecchhhhhc------------------
Confidence 4555555555555 33444555555555555555555 444455555555555555544432
Q ss_pred EEccCccCccccchHHHhcCCCCCEEEccCCcCcccCCCCcccCCCCEEEcccCcCcccCCCCCcCCcEEEccCCccccc
Q 037325 424 LVLNKARISDTISDWFWQLSLTLDELDVAYNELRGRVPNSLGFNFPAKVDLSFNNFEGRLLLWSFNVTKLYLRDNSFSGL 503 (598)
Q Consensus 424 L~l~~n~l~~~~~~~~~~~~~~L~~L~ls~n~~~~~~p~~~~~~~L~~l~ls~n~l~~~~~~~~~~L~~L~ls~n~l~~~ 503 (598)
.|..|.. ++.|+.||+++|++... .+.|.++ .+..|+.|++++|.|. -
T Consensus 94 -----------lprgfgs-~p~levldltynnl~e~------------------~lpgnff-~m~tlralyl~dndfe-~ 141 (264)
T KOG0617|consen 94 -----------LPRGFGS-FPALEVLDLTYNNLNEN------------------SLPGNFF-YMTTLRALYLGDNDFE-I 141 (264)
T ss_pred -----------CccccCC-Cchhhhhhccccccccc------------------cCCcchh-HHHHHHHHHhcCCCcc-c
Confidence 2222322 44555555555544321 1111110 1345677777777776 6
Q ss_pred CCchhhcccCCCCCccccCCCCeEeCcCCccccccchhccCCCCCCEEECCCCcCccccchhccCCC---CCCEEEccCC
Q 037325 504 IPNDIGQNLPFLTDLGNLKQLITLVISNNNLSGEIPLLFSNISFLYILDMSNNSLSGSTPESIGSLR---TVKFLVLRNN 580 (598)
Q Consensus 504 ~p~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~l~~l~---~L~~L~l~~n 580 (598)
+|.++++ +++||.|.+.+|.+- ++|..++.++.|++|++.+|+++ .+|.+++++. +=+...+.+|
T Consensus 142 lp~dvg~----------lt~lqil~lrdndll-~lpkeig~lt~lrelhiqgnrl~-vlppel~~l~l~~~k~v~r~E~N 209 (264)
T KOG0617|consen 142 LPPDVGK----------LTNLQILSLRDNDLL-SLPKEIGDLTRLRELHIQGNRLT-VLPPELANLDLVGNKQVMRMEEN 209 (264)
T ss_pred CChhhhh----------hcceeEEeeccCchh-hCcHHHHHHHHHHHHhcccceee-ecChhhhhhhhhhhHHHHhhhhC
Confidence 7777777 788888888888877 78888888888888888888887 6777776653 2244555666
Q ss_pred CCcccCCc
Q 037325 581 YLSGKLPL 588 (598)
Q Consensus 581 ~l~g~~P~ 588 (598)
+.-..|-+
T Consensus 210 Pwv~pIae 217 (264)
T KOG0617|consen 210 PWVNPIAE 217 (264)
T ss_pred CCCChHHH
Confidence 65544443
|
|
| >KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.54 E-value=1.1e-16 Score=133.65 Aligned_cols=184 Identities=27% Similarity=0.433 Sum_probs=144.4
Q ss_pred cCCCCCccEEEccCCCCCCCcchhhhcCCCCCEEEccCCcccccCCccccCCCCccEEECcCCCcCccccchhhcCCCCC
Q 037325 236 SLNFASLQVLDLSNNDFNSTTPHWLFNITSLLCLDLGSNDLQGDIPDGFASLNSLQELDLSGNSFLGGQLSRNLGKLCNL 315 (598)
Q Consensus 236 ~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~l~~l~~L 315 (598)
+..+.+++.|.+++|+++ ..|..++.+.+|+.|++.+|++. .+|..+..+++|+.|++.-|++ ...|..|+.+|.|
T Consensus 29 Lf~~s~ITrLtLSHNKl~-~vppnia~l~nlevln~~nnqie-~lp~~issl~klr~lnvgmnrl--~~lprgfgs~p~l 104 (264)
T KOG0617|consen 29 LFNMSNITRLTLSHNKLT-VVPPNIAELKNLEVLNLSNNQIE-ELPTSISSLPKLRILNVGMNRL--NILPRGFGSFPAL 104 (264)
T ss_pred ccchhhhhhhhcccCcee-ecCCcHHHhhhhhhhhcccchhh-hcChhhhhchhhhheecchhhh--hcCccccCCCchh
Confidence 345677888899999988 45666888999999999999988 7888899999999999999885 5678999999999
Q ss_pred CEEecccccCCcc-cchhhhCCCCCCCCCCccEEEccCccccccCccccCCCCCCCEEEccCCcCCccchhhccCCCCCC
Q 037325 316 RTMILSRNNISSE-VSDFLDGLSECTNSILLEKLELRFNQFTGILPISLGSLKNLRHLVLWQNSFLGSIPPSIGNLTLLK 394 (598)
Q Consensus 316 ~~L~l~~n~l~~~-~~~~~~~l~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~ls~n~l~~~~~~~l~~l~~L~ 394 (598)
+.|++.+|++... .|.-|-.+. .|+.|.+++|.+. .+|..++++++|+.|.+..|.+. .+|..++.+..|+
T Consensus 105 evldltynnl~e~~lpgnff~m~------tlralyl~dndfe-~lp~dvg~lt~lqil~lrdndll-~lpkeig~lt~lr 176 (264)
T KOG0617|consen 105 EVLDLTYNNLNENSLPGNFFYMT------TLRALYLGDNDFE-ILPPDVGKLTNLQILSLRDNDLL-SLPKEIGDLTRLR 176 (264)
T ss_pred hhhhccccccccccCCcchhHHH------HHHHHHhcCCCcc-cCChhhhhhcceeEEeeccCchh-hCcHHHHHHHHHH
Confidence 9999999988753 344444444 6888999999997 78889999999999999999888 7888999999999
Q ss_pred EEeCcCCcCCcccCCCchhhhcCCCCCCEEEccCccCcc
Q 037325 395 ELYLASNQMNGQKISDSYQHLKNQTELRTLVLNKARISD 433 (598)
Q Consensus 395 ~L~l~~n~l~~~~~~~~~~~l~~~~~L~~L~l~~n~l~~ 433 (598)
+|.+.+|+++..+ | .+..+.-..+-+.+.+.+|.+..
T Consensus 177 elhiqgnrl~vlp-p-el~~l~l~~~k~v~r~E~NPwv~ 213 (264)
T KOG0617|consen 177 ELHIQGNRLTVLP-P-ELANLDLVGNKQVMRMEENPWVN 213 (264)
T ss_pred HHhcccceeeecC-h-hhhhhhhhhhHHHHhhhhCCCCC
Confidence 9999999988654 3 22223323333444455555443
|
|
| >PLN03150 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.53 E-value=7.8e-14 Score=149.81 Aligned_cols=129 Identities=34% Similarity=0.537 Sum_probs=111.1
Q ss_pred CCCHHHHHHHHHHHhcCCCCCCCCCCCCCCCCC----CcccEEecC--CC--CcEEEEEcCCCCCCCCCCcccCCCCCcc
Q 037325 31 GCQEAERKALLQFKQSLRDPSGQLSSWVGEDCC----SWSGVSCNN--RT--ASVIKLNLNNPFRDSFGSFEDDAGHELG 102 (598)
Q Consensus 31 ~~~~~~~~~l~~~~~~~~~~~~~~~~W~~~~~c----~w~gv~c~~--~~--~~v~~L~L~~~~~~~~~~~~~~~~~~l~ 102 (598)
.+.++|.+||+.+|+++..+.. .+|.+..|| .|.||.|.. .. .+|+.|+|++ +++.
T Consensus 368 ~t~~~~~~aL~~~k~~~~~~~~--~~W~g~~C~p~~~~w~Gv~C~~~~~~~~~~v~~L~L~~--------------n~L~ 431 (623)
T PLN03150 368 KTLLEEVSALQTLKSSLGLPLR--FGWNGDPCVPQQHPWSGADCQFDSTKGKWFIDGLGLDN--------------QGLR 431 (623)
T ss_pred ccCchHHHHHHHHHHhcCCccc--CCCCCCCCCCcccccccceeeccCCCCceEEEEEECCC--------------CCcc
Confidence 4567899999999998865532 479776664 799999952 22 2599999998 7999
Q ss_pred eecCccccCCCCCCEEeCCCCCCCCCCcchhccCCCCCCEEECcCCCCCcccchhccCCCCCCEEEccCCCCCC
Q 037325 103 GEISPSLLQLKDLEYLDLSMNNFTGFQVPEFIGSLKELRYLNLSGSFFSGTIPQTLGNLSNLLYLDLNNFLDQS 176 (598)
Q Consensus 103 ~~~~~~l~~l~~L~~L~Ls~n~l~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~~~~ 176 (598)
|.+|..+.++++|++|+|++|.+.+. +|..++.+++|++|+|++|+++|.+|..++++++|++|++++|.+..
T Consensus 432 g~ip~~i~~L~~L~~L~Ls~N~l~g~-iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~N~l~g 504 (623)
T PLN03150 432 GFIPNDISKLRHLQSINLSGNSIRGN-IPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNGNSLSG 504 (623)
T ss_pred ccCCHHHhCCCCCCEEECCCCcccCc-CChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcCCcccc
Confidence 99999999999999999999999986 99999999999999999999999999999999999999998876643
|
|
| >KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.24 E-value=1.8e-12 Score=121.27 Aligned_cols=74 Identities=18% Similarity=0.167 Sum_probs=44.0
Q ss_pred CCCCCCEEEccCCcCCcc----chhhccCCCCCCEEeCcCCcCCcccCCCchhhhcCCCCCCEEEccCccCccccchH
Q 037325 365 SLKNLRHLVLWQNSFLGS----IPPSIGNLTLLKELYLASNQMNGQKISDSYQHLKNQTELRTLVLNKARISDTISDW 438 (598)
Q Consensus 365 ~l~~L~~L~ls~n~l~~~----~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~ 438 (598)
.-+.|+++...+|++... +...+...+.|+.+.+..|.|....+......+..+++|++||+.+|.++......
T Consensus 155 ~~~~Lrv~i~~rNrlen~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~ 232 (382)
T KOG1909|consen 155 SKPKLRVFICGRNRLENGGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVA 232 (382)
T ss_pred CCcceEEEEeeccccccccHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHH
Confidence 345677777777766533 22345556777777777776654332223355666777777777777666544433
|
|
| >KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.22 E-value=3.5e-12 Score=122.57 Aligned_cols=218 Identities=26% Similarity=0.234 Sum_probs=118.0
Q ss_pred cCCCCCCEEECcCCCCCcccc--hhccCCCCCCEEEccCCCCCCCccChhhhcCCCCCcEEEcCCCCCCCCcccchHhhh
Q 037325 135 GSLKELRYLNLSGSFFSGTIP--QTLGNLSNLLYLDLNNFLDQSNQIDLEWLSGLSSLVYFNLGGADLSKAGAYWLEVFN 212 (598)
Q Consensus 135 ~~l~~L~~L~L~~n~l~~~~p--~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~ 212 (598)
.++.+|+.+.|.++.+. ..+ .....|++++.|||++|-+...... .....
T Consensus 118 sn~kkL~~IsLdn~~V~-~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v---------------------------~~i~e 169 (505)
T KOG3207|consen 118 SNLKKLREISLDNYRVE-DAGIEEYSKILPNVRDLDLSRNLFHNWFPV---------------------------LKIAE 169 (505)
T ss_pred hhHHhhhheeecCcccc-ccchhhhhhhCCcceeecchhhhHHhHHHH---------------------------HHHHH
Confidence 44566666666666554 222 2334455555555555433322222 33444
Q ss_pred cCCCCCEEEcCCCCCCCCCCCCCcCCCCCccEEEccCCCCCCCcc-hhhhcCCCCCEEEccCCcccccCCccccCCCCcc
Q 037325 213 KLHSFVELHLPNCNLPSLPLSFPSLNFASLQVLDLSNNDFNSTTP-HWLFNITSLLCLDLGSNDLQGDIPDGFASLNSLQ 291 (598)
Q Consensus 213 ~l~~L~~L~l~~~~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~-~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~ 291 (598)
.+++|+.|+++.|.+........-..+++|+.|.++.|.++...- ..+..+|+|+.|++..|...........-+..|+
T Consensus 170 qLp~Le~LNls~Nrl~~~~~s~~~~~l~~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~ 249 (505)
T KOG3207|consen 170 QLPSLENLNLSSNRLSNFISSNTTLLLSHLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQ 249 (505)
T ss_pred hcccchhcccccccccCCccccchhhhhhhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHh
Confidence 555555555555555443332333355778888888887764322 2345678888888888852222222234456788
Q ss_pred EEECcCCCcCccccchhhcCCCCCCEEecccccCCcccchhhhCCCCCCCCCCccEEEccCcccccc-CccccCCCCCCC
Q 037325 292 ELDLSGNSFLGGQLSRNLGKLCNLRTMILSRNNISSEVSDFLDGLSECTNSILLEKLELRFNQFTGI-LPISLGSLKNLR 370 (598)
Q Consensus 292 ~L~l~~n~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~~~~~~~L~~L~Ls~n~l~~~-~~~~l~~l~~L~ 370 (598)
+|+|++|++..-..-...+.++.|..|+++.+.+...-............+++|++|++..|++... ....+..+++|+
T Consensus 250 ~LdLs~N~li~~~~~~~~~~l~~L~~Lnls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~~w~sl~~l~~l~nlk 329 (505)
T KOG3207|consen 250 ELDLSNNNLIDFDQGYKVGTLPGLNQLNLSSTGIASIAEPDVESLDKTHTFPKLEYLNISENNIRDWRSLNHLRTLENLK 329 (505)
T ss_pred hccccCCcccccccccccccccchhhhhccccCcchhcCCCccchhhhcccccceeeecccCccccccccchhhccchhh
Confidence 8888888864433335567788888888888876543221111111111222677777777766422 111333445555
Q ss_pred EEEccCCcCC
Q 037325 371 HLVLWQNSFL 380 (598)
Q Consensus 371 ~L~ls~n~l~ 380 (598)
.|.+..|.+.
T Consensus 330 ~l~~~~n~ln 339 (505)
T KOG3207|consen 330 HLRITLNYLN 339 (505)
T ss_pred hhhccccccc
Confidence 6665555554
|
|
| >PLN03150 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.21 E-value=1.9e-11 Score=131.58 Aligned_cols=109 Identities=26% Similarity=0.361 Sum_probs=88.5
Q ss_pred CCEEEcccCcCcccCCCC---CcCCcEEEccCCcccccCCchhhcccCCCCCccccCCCCeEeCcCCccccccchhccCC
Q 037325 469 PAKVDLSFNNFEGRLLLW---SFNVTKLYLRDNSFSGLIPNDIGQNLPFLTDLGNLKQLITLVISNNNLSGEIPLLFSNI 545 (598)
Q Consensus 469 L~~l~ls~n~l~~~~~~~---~~~L~~L~ls~n~l~~~~p~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l 545 (598)
++.|+|++|.+.|.+|.. +++|+.|+|++|+++|.+|..++. +++|+.|+|++|+++|.+|..++++
T Consensus 420 v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~----------l~~L~~LdLs~N~lsg~iP~~l~~L 489 (623)
T PLN03150 420 IDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGS----------ITSLEVLDLSYNSFNGSIPESLGQL 489 (623)
T ss_pred EEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhC----------CCCCCEEECCCCCCCCCCchHHhcC
Confidence 667888888888888765 578888888888888888887777 7888888888888888888888888
Q ss_pred CCCCEEECCCCcCccccchhccCC-CCCCEEEccCCCCcccCC
Q 037325 546 SFLYILDMSNNSLSGSTPESIGSL-RTVKFLVLRNNYLSGKLP 587 (598)
Q Consensus 546 ~~L~~L~ls~N~l~~~~p~~l~~l-~~L~~L~l~~n~l~g~~P 587 (598)
++|++|+|++|+++|.+|..+... .++..+++.+|+..+..|
T Consensus 490 ~~L~~L~Ls~N~l~g~iP~~l~~~~~~~~~l~~~~N~~lc~~p 532 (623)
T PLN03150 490 TSLRILNLNGNSLSGRVPAALGGRLLHRASFNFTDNAGLCGIP 532 (623)
T ss_pred CCCCEEECcCCcccccCChHHhhccccCceEEecCCccccCCC
Confidence 888888888888888888887663 467788888887554455
|
|
| >KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.19 E-value=3.4e-12 Score=119.33 Aligned_cols=140 Identities=26% Similarity=0.240 Sum_probs=69.2
Q ss_pred CCCCccEEECcCCCcCcc---ccchhhcCCCCCCEEecccccCCcccch----hhhCCCCCCCCCCccEEEccCcccccc
Q 037325 286 SLNSLQELDLSGNSFLGG---QLSRNLGKLCNLRTMILSRNNISSEVSD----FLDGLSECTNSILLEKLELRFNQFTGI 358 (598)
Q Consensus 286 ~l~~L~~L~l~~n~~~~~---~~~~~l~~l~~L~~L~l~~n~l~~~~~~----~~~~l~~~~~~~~L~~L~Ls~n~l~~~ 358 (598)
.-++|+.+...+|++..+ .+...+...+.|+.+.+..|.+...... .+...+ .|+.||+.+|.++..
T Consensus 155 ~~~~Lrv~i~~rNrlen~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~------~LevLdl~DNtft~e 228 (382)
T KOG1909|consen 155 SKPKLRVFICGRNRLENGGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCP------HLEVLDLRDNTFTLE 228 (382)
T ss_pred CCcceEEEEeeccccccccHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCC------cceeeecccchhhhH
Confidence 345566666666663111 1233445556666666666655443331 122222 566666666655422
Q ss_pred ----CccccCCCCCCCEEEccCCcCCccchhhc-----cCCCCCCEEeCcCCcCCcccCCCchhhhcCCCCCCEEEccCc
Q 037325 359 ----LPISLGSLKNLRHLVLWQNSFLGSIPPSI-----GNLTLLKELYLASNQMNGQKISDSYQHLKNQTELRTLVLNKA 429 (598)
Q Consensus 359 ----~~~~l~~l~~L~~L~ls~n~l~~~~~~~l-----~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~~~~L~~L~l~~n 429 (598)
+...+..++.|+.|++++|.+...-...+ ...|+|+.+.+.+|.|+..............+.|+.|++++|
T Consensus 229 gs~~LakaL~s~~~L~El~l~dcll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN 308 (382)
T KOG1909|consen 229 GSVALAKALSSWPHLRELNLGDCLLENEGAIAFVDALKESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGN 308 (382)
T ss_pred HHHHHHHHhcccchheeecccccccccccHHHHHHHHhccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCcc
Confidence 22334455566666666665544322221 234566666666666653321222223344555666666666
Q ss_pred cC
Q 037325 430 RI 431 (598)
Q Consensus 430 ~l 431 (598)
++
T Consensus 309 ~l 310 (382)
T KOG1909|consen 309 RL 310 (382)
T ss_pred cc
Confidence 55
|
|
| >KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.13 E-value=1.3e-11 Score=118.71 Aligned_cols=210 Identities=22% Similarity=0.231 Sum_probs=101.6
Q ss_pred CCCCCEEEcCCCCCCCCCCCCCcCCCCCccEEEccCCCCCCC--cchhhhcCCCCCEEEccCCcccccCCcc-ccCCCCc
Q 037325 214 LHSFVELHLPNCNLPSLPLSFPSLNFASLQVLDLSNNDFNST--TPHWLFNITSLLCLDLGSNDLQGDIPDG-FASLNSL 290 (598)
Q Consensus 214 l~~L~~L~l~~~~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~--~~~~l~~l~~L~~L~l~~n~l~~~~~~~-l~~l~~L 290 (598)
+.+|+++.+.++.+...+.......|++++.||++.|-++.- +......+|+|+.|+++.|.+....... -..++.|
T Consensus 120 ~kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~~l 199 (505)
T KOG3207|consen 120 LKKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLSHL 199 (505)
T ss_pred HHhhhheeecCccccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhhhh
Confidence 344444444444444333222333455555555555544431 1222345566666666666554221111 1234556
Q ss_pred cEEECcCCCcCccccchhhcCCCCCCEEecccccCCcccchhhhCCCCCCCCCCccEEEccCccccccC-ccccCCCCCC
Q 037325 291 QELDLSGNSFLGGQLSRNLGKLCNLRTMILSRNNISSEVSDFLDGLSECTNSILLEKLELRFNQFTGIL-PISLGSLKNL 369 (598)
Q Consensus 291 ~~L~l~~n~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~~~~~~~L~~L~Ls~n~l~~~~-~~~l~~l~~L 369 (598)
+.|.++.|.+....+...+..+|+|+.|++..|...........-++ .|++|||++|++...- ....+.++.|
T Consensus 200 K~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~------~L~~LdLs~N~li~~~~~~~~~~l~~L 273 (505)
T KOG3207|consen 200 KQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQ------TLQELDLSNNNLIDFDQGYKVGTLPGL 273 (505)
T ss_pred heEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhh------HHhhccccCCcccccccccccccccch
Confidence 66666666644444444555666666666666642221111122222 4666666666554221 1234556666
Q ss_pred CEEEccCCcCCcc-chhh-----ccCCCCCCEEeCcCCcCCcccCCCchhhhcCCCCCCEEEccCccCc
Q 037325 370 RHLVLWQNSFLGS-IPPS-----IGNLTLLKELYLASNQMNGQKISDSYQHLKNQTELRTLVLNKARIS 432 (598)
Q Consensus 370 ~~L~ls~n~l~~~-~~~~-----l~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~~~~L~~L~l~~n~l~ 432 (598)
+.|+++.|.+... .|+. ...+++|++|++..|++.+.. ++..+..+++|+.|.+..|.++
T Consensus 274 ~~Lnls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~~w~---sl~~l~~l~nlk~l~~~~n~ln 339 (505)
T KOG3207|consen 274 NQLNLSSTGIASIAEPDVESLDKTHTFPKLEYLNISENNIRDWR---SLNHLRTLENLKHLRITLNYLN 339 (505)
T ss_pred hhhhccccCcchhcCCCccchhhhcccccceeeecccCcccccc---ccchhhccchhhhhhccccccc
Confidence 6666666655432 1221 234566666666666664321 2233444555555555555554
|
|
| >KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.05 E-value=7.8e-12 Score=123.95 Aligned_cols=187 Identities=26% Similarity=0.355 Sum_probs=110.3
Q ss_pred EEEccCCcCCccchhhccCCCCCCEEeCcCCcCCcccCCCchhhhcCCCCCCEEEccCccCccccchHHHhcCCCCCEEE
Q 037325 371 HLVLWQNSFLGSIPPSIGNLTLLKELYLASNQMNGQKISDSYQHLKNQTELRTLVLNKARISDTISDWFWQLSLTLDELD 450 (598)
Q Consensus 371 ~L~ls~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~ 450 (598)
..|++.|++. ++|..+..+..|+.+.+..|.+.-.+ ..+.++..|+.++++.|++. ..|..++. --|+.|.
T Consensus 79 ~aDlsrNR~~-elp~~~~~f~~Le~liLy~n~~r~ip-----~~i~~L~~lt~l~ls~NqlS-~lp~~lC~--lpLkvli 149 (722)
T KOG0532|consen 79 FADLSRNRFS-ELPEEACAFVSLESLILYHNCIRTIP-----EAICNLEALTFLDLSSNQLS-HLPDGLCD--LPLKVLI 149 (722)
T ss_pred hhhccccccc-cCchHHHHHHHHHHHHHHhccceecc-----hhhhhhhHHHHhhhccchhh-cCChhhhc--CcceeEE
Confidence 3444444444 44444444444444444444433221 12333444444444444444 23333333 2488889
Q ss_pred ccCCcCcccCCCCcccC-CCCEEEcccCcCcccCCC--CCcCCcEEEccCCcccccCCchhhcccCCCCCccccCCCCeE
Q 037325 451 VAYNELRGRVPNSLGFN-FPAKVDLSFNNFEGRLLL--WSFNVTKLYLRDNSFSGLIPNDIGQNLPFLTDLGNLKQLITL 527 (598)
Q Consensus 451 ls~n~~~~~~p~~~~~~-~L~~l~ls~n~l~~~~~~--~~~~L~~L~ls~n~l~~~~p~~~~~~~~~~~~~~~l~~L~~L 527 (598)
+++|+++ .+|..++.. .+..+|.+.|.+....+. .+.+|+.|.+..|++. .+|++++. |+ |..|
T Consensus 150 ~sNNkl~-~lp~~ig~~~tl~~ld~s~nei~slpsql~~l~slr~l~vrRn~l~-~lp~El~~----------Lp-Li~l 216 (722)
T KOG0532|consen 150 VSNNKLT-SLPEEIGLLPTLAHLDVSKNEIQSLPSQLGYLTSLRDLNVRRNHLE-DLPEELCS----------LP-LIRL 216 (722)
T ss_pred EecCccc-cCCcccccchhHHHhhhhhhhhhhchHHhhhHHHHHHHHHhhhhhh-hCCHHHhC----------Cc-eeee
Confidence 9999987 567666633 677778888877643332 2466777777778777 56666554 43 7778
Q ss_pred eCcCCccccccchhccCCCCCCEEECCCCcCccccchhccCCC---CCCEEEccCCC
Q 037325 528 VISNNNLSGEIPLLFSNISFLYILDMSNNSLSGSTPESIGSLR---TVKFLVLRNNY 581 (598)
Q Consensus 528 ~Ls~N~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~l~~l~---~L~~L~l~~n~ 581 (598)
|+|+|+++ .||.+|.+|+.|++|-|.+|.+. +.|.+++-.- =.++|+...++
T Consensus 217 DfScNkis-~iPv~fr~m~~Lq~l~LenNPLq-SPPAqIC~kGkVHIFKyL~~qA~q 271 (722)
T KOG0532|consen 217 DFSCNKIS-YLPVDFRKMRHLQVLQLENNPLQ-SPPAQICEKGKVHIFKYLSTQACQ 271 (722)
T ss_pred ecccCcee-ecchhhhhhhhheeeeeccCCCC-CChHHHHhccceeeeeeecchhcc
Confidence 88888887 78888888888888888888877 5666654322 23455555553
|
|
| >COG4886 Leucine-rich repeat (LRR) protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.03 E-value=4e-10 Score=115.96 Aligned_cols=61 Identities=38% Similarity=0.498 Sum_probs=34.2
Q ss_pred CccEEEccCccccccCccccCCCC-CCCEEEccCCcCCccchhhccCCCCCCEEeCcCCcCCcc
Q 037325 344 LLEKLELRFNQFTGILPISLGSLK-NLRHLVLWQNSFLGSIPPSIGNLTLLKELYLASNQMNGQ 406 (598)
Q Consensus 344 ~L~~L~Ls~n~l~~~~~~~l~~l~-~L~~L~ls~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~ 406 (598)
.++.|++.+|.++. ++....... +|+.|++++|++. .+|..+..++.|+.|++++|+++..
T Consensus 117 ~l~~L~l~~n~i~~-i~~~~~~~~~nL~~L~l~~N~i~-~l~~~~~~l~~L~~L~l~~N~l~~l 178 (394)
T COG4886 117 NLTSLDLDNNNITD-IPPLIGLLKSNLKELDLSDNKIE-SLPSPLRNLPNLKNLDLSFNDLSDL 178 (394)
T ss_pred ceeEEecCCccccc-Cccccccchhhcccccccccchh-hhhhhhhccccccccccCCchhhhh
Confidence 46666666666653 343444443 6666666666655 3434455666666666666655543
|
|
| >KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.02 E-value=1.7e-11 Score=121.60 Aligned_cols=191 Identities=28% Similarity=0.382 Sum_probs=152.0
Q ss_pred cEEEcCCCCCCCCcccchHhhhcCCCCCEEEcCCCCCCCCCCCCCcCCCCCccEEEccCCCCCCCcchhhhcCCCCCEEE
Q 037325 191 VYFNLGGADLSKAGAYWLEVFNKLHSFVELHLPNCNLPSLPLSFPSLNFASLQVLDLSNNDFNSTTPHWLFNITSLLCLD 270 (598)
Q Consensus 191 ~~L~l~~n~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~ 270 (598)
...+++.|++... +..+..+..|+.+.++.|.+..++. .+.++..|+.++++.|+++ ..|..++.++ |+.|-
T Consensus 78 ~~aDlsrNR~~el----p~~~~~f~~Le~liLy~n~~r~ip~--~i~~L~~lt~l~ls~NqlS-~lp~~lC~lp-Lkvli 149 (722)
T KOG0532|consen 78 VFADLSRNRFSEL----PEEACAFVSLESLILYHNCIRTIPE--AICNLEALTFLDLSSNQLS-HLPDGLCDLP-LKVLI 149 (722)
T ss_pred hhhhccccccccC----chHHHHHHHHHHHHHHhccceecch--hhhhhhHHHHhhhccchhh-cCChhhhcCc-ceeEE
Confidence 4456666777665 4566667778888888888888774 5667889999999999987 5777788777 89999
Q ss_pred ccCCcccccCCccccCCCCccEEECcCCCcCccccchhhcCCCCCCEEecccccCCcccchhhhCCCCCCCCCCccEEEc
Q 037325 271 LGSNDLQGDIPDGFASLNSLQELDLSGNSFLGGQLSRNLGKLCNLRTMILSRNNISSEVSDFLDGLSECTNSILLEKLEL 350 (598)
Q Consensus 271 l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~~~~~~~L~~L~L 350 (598)
+++|+++ .+|+.++..+.|..|+.+.|.+ ..+|..++.+.+|+.|.+.+|++....+ .+..++ |..||+
T Consensus 150 ~sNNkl~-~lp~~ig~~~tl~~ld~s~nei--~slpsql~~l~slr~l~vrRn~l~~lp~-El~~Lp-------Li~lDf 218 (722)
T KOG0532|consen 150 VSNNKLT-SLPEEIGLLPTLAHLDVSKNEI--QSLPSQLGYLTSLRDLNVRRNHLEDLPE-ELCSLP-------LIRLDF 218 (722)
T ss_pred EecCccc-cCCcccccchhHHHhhhhhhhh--hhchHHhhhHHHHHHHHHhhhhhhhCCH-HHhCCc-------eeeeec
Confidence 9999998 7888899889999999999985 6678889999999999999998876544 444665 999999
Q ss_pred cCccccccCccccCCCCCCCEEEccCCcCCccchhhccCCCC---CCEEeCcCCc
Q 037325 351 RFNQFTGILPISLGSLKNLRHLVLWQNSFLGSIPPSIGNLTL---LKELYLASNQ 402 (598)
Q Consensus 351 s~n~l~~~~~~~l~~l~~L~~L~ls~n~l~~~~~~~l~~l~~---L~~L~l~~n~ 402 (598)
+.|++. .+|..|..|+.|++|.|.+|.+. ..|..+...-+ .++|+..-|+
T Consensus 219 ScNkis-~iPv~fr~m~~Lq~l~LenNPLq-SPPAqIC~kGkVHIFKyL~~qA~q 271 (722)
T KOG0532|consen 219 SCNKIS-YLPVDFRKMRHLQVLQLENNPLQ-SPPAQICEKGKVHIFKYLSTQACQ 271 (722)
T ss_pred ccCcee-ecchhhhhhhhheeeeeccCCCC-CChHHHHhccceeeeeeecchhcc
Confidence 999998 68999999999999999999988 55554433222 4567776663
|
|
| >PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A | Back alignment and domain information |
|---|
Probab=99.02 E-value=4.3e-10 Score=98.98 Aligned_cols=127 Identities=26% Similarity=0.331 Sum_probs=39.1
Q ss_pred cCCCCCCEEeCCCCCCCCCCcchhcc-CCCCCCEEECcCCCCCcccchhccCCCCCCEEEccCCCCCCCccChhhhcCCC
Q 037325 110 LQLKDLEYLDLSMNNFTGFQVPEFIG-SLKELRYLNLSGSFFSGTIPQTLGNLSNLLYLDLNNFLDQSNQIDLEWLSGLS 188 (598)
Q Consensus 110 ~~l~~L~~L~Ls~n~l~~~~~p~~~~-~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~~l~ 188 (598)
.+..++++|+|++|.|+.+ +.++ .+.+|+.|++++|.++ .++ .+.. ++
T Consensus 16 ~n~~~~~~L~L~~n~I~~I---e~L~~~l~~L~~L~Ls~N~I~-~l~-~l~~--------------------------L~ 64 (175)
T PF14580_consen 16 NNPVKLRELNLRGNQISTI---ENLGATLDKLEVLDLSNNQIT-KLE-GLPG--------------------------LP 64 (175)
T ss_dssp -----------------------S--TT-TT--EEE-TTS--S---T-T------------------------------T
T ss_pred ccccccccccccccccccc---cchhhhhcCCCEEECCCCCCc-ccc-CccC--------------------------hh
Confidence 3445567777777776632 2233 4566777777777666 332 2333 44
Q ss_pred CCcEEEcCCCCCCCCcccchHhh-hcCCCCCEEEcCCCCCCCCCCCCCcCCCCCccEEEccCCCCCCCc---chhhhcCC
Q 037325 189 SLVYFNLGGADLSKAGAYWLEVF-NKLHSFVELHLPNCNLPSLPLSFPSLNFASLQVLDLSNNDFNSTT---PHWLFNIT 264 (598)
Q Consensus 189 ~L~~L~l~~n~~~~~~~~~~~~~-~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~---~~~l~~l~ 264 (598)
+|+.|++++|.++... +.+ ..+++|++|++++|.+.+......+..+++|++|++.+|.++... ...+..+|
T Consensus 65 ~L~~L~L~~N~I~~i~----~~l~~~lp~L~~L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~~~~~YR~~vi~~lP 140 (175)
T PF14580_consen 65 RLKTLDLSNNRISSIS----EGLDKNLPNLQELYLSNNKISDLNELEPLSSLPKLRVLSLEGNPVCEKKNYRLFVIYKLP 140 (175)
T ss_dssp T--EEE--SS---S-C----HHHHHH-TT--EEE-TTS---SCCCCGGGGG-TT--EEE-TT-GGGGSTTHHHHHHHH-T
T ss_pred hhhhcccCCCCCCccc----cchHHhCCcCCEEECcCCcCCChHHhHHHHcCCCcceeeccCCcccchhhHHHHHHHHcC
Confidence 4555555555555442 223 346677777777776666555455556677777777777665321 12345566
Q ss_pred CCCEEEc
Q 037325 265 SLLCLDL 271 (598)
Q Consensus 265 ~L~~L~l 271 (598)
+|+.||-
T Consensus 141 ~Lk~LD~ 147 (175)
T PF14580_consen 141 SLKVLDG 147 (175)
T ss_dssp T-SEETT
T ss_pred hhheeCC
Confidence 6666654
|
|
| >PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A | Back alignment and domain information |
|---|
Probab=99.01 E-value=4.3e-10 Score=98.98 Aligned_cols=128 Identities=34% Similarity=0.354 Sum_probs=58.4
Q ss_pred cEEEEEcCCCCCCCCCCcccCCCCCcceecCcccc-CCCCCCEEeCCCCCCCCCCcchhccCCCCCCEEECcCCCCCccc
Q 037325 76 SVIKLNLNNPFRDSFGSFEDDAGHELGGEISPSLL-QLKDLEYLDLSMNNFTGFQVPEFIGSLKELRYLNLSGSFFSGTI 154 (598)
Q Consensus 76 ~v~~L~L~~~~~~~~~~~~~~~~~~l~~~~~~~l~-~l~~L~~L~Ls~n~l~~~~~p~~~~~l~~L~~L~L~~n~l~~~~ 154 (598)
+.++|+|.+ +.+... ..++ .+.+|+.|+|++|.++.. . .+..+++|++|++++|+++ .+
T Consensus 20 ~~~~L~L~~--------------n~I~~I--e~L~~~l~~L~~L~Ls~N~I~~l--~-~l~~L~~L~~L~L~~N~I~-~i 79 (175)
T PF14580_consen 20 KLRELNLRG--------------NQISTI--ENLGATLDKLEVLDLSNNQITKL--E-GLPGLPRLKTLDLSNNRIS-SI 79 (175)
T ss_dssp --------------------------------S--TT-TT--EEE-TTS--S----T-T----TT--EEE--SS----S-
T ss_pred ccccccccc--------------cccccc--cchhhhhcCCCEEECCCCCCccc--c-CccChhhhhhcccCCCCCC-cc
Confidence 568888988 565532 3455 588999999999999953 3 5678999999999999999 55
Q ss_pred chhc-cCCCCCCEEEccCCCCCCCccChhhhcCCCCCcEEEcCCCCCCCCcccchHhhhcCCCCCEEEcCC
Q 037325 155 PQTL-GNLSNLLYLDLNNFLDQSNQIDLEWLSGLSSLVYFNLGGADLSKAGAYWLEVFNKLHSFVELHLPN 224 (598)
Q Consensus 155 p~~l-~~l~~L~~L~L~~n~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~l~~L~~L~l~~ 224 (598)
+..+ ..+++|++|++++|.+.... ....+..+++|++|++.+|++..........+..+|+|+.||-..
T Consensus 80 ~~~l~~~lp~L~~L~L~~N~I~~l~-~l~~L~~l~~L~~L~L~~NPv~~~~~YR~~vi~~lP~Lk~LD~~~ 149 (175)
T PF14580_consen 80 SEGLDKNLPNLQELYLSNNKISDLN-ELEPLSSLPKLRVLSLEGNPVCEKKNYRLFVIYKLPSLKVLDGQD 149 (175)
T ss_dssp CHHHHHH-TT--EEE-TTS---SCC-CCGGGGG-TT--EEE-TT-GGGGSTTHHHHHHHH-TT-SEETTEE
T ss_pred ccchHHhCCcCCEEECcCCcCCChH-HhHHHHcCCCcceeeccCCcccchhhHHHHHHHHcChhheeCCEE
Confidence 5444 46899999999999875443 346678899999999999999877655566777888888886543
|
|
| >KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.97 E-value=1.4e-11 Score=112.57 Aligned_cols=182 Identities=24% Similarity=0.190 Sum_probs=110.4
Q ss_pred CCCEEeCCCCCCCCCCcchhccCCCCCCEEECcCCCCCcccchhccCCCCCCEEEccCCCCCCCccChhhhcCCCCCcEE
Q 037325 114 DLEYLDLSMNNFTGFQVPEFIGSLKELRYLNLSGSFFSGTIPQTLGNLSNLLYLDLNNFLDQSNQIDLEWLSGLSSLVYF 193 (598)
Q Consensus 114 ~L~~L~Ls~n~l~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~~l~~L~~L 193 (598)
.|++||||+..++..++-..+.++.+|+.|.+.++++.+.+-..+++..+|+.|+++.|.-.......-.+.+|+.|+.|
T Consensus 186 Rlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~L 265 (419)
T KOG2120|consen 186 RLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDEL 265 (419)
T ss_pred hhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhhc
Confidence 58899999888876556666788889999999999998888888888889999998876543333333344555555555
Q ss_pred EcCCCCCCCCcccchHhhhcCCCCCEEEcCCCCCCCCCCCCCc-CCCCCccEEEccCCC--CCC-CcchhhhcCCCCCEE
Q 037325 194 NLGGADLSKAGAYWLEVFNKLHSFVELHLPNCNLPSLPLSFPS-LNFASLQVLDLSNND--FNS-TTPHWLFNITSLLCL 269 (598)
Q Consensus 194 ~l~~n~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~-~~l~~L~~L~L~~n~--l~~-~~~~~l~~l~~L~~L 269 (598)
+++.+.+.... ..... .--++|+.|++++++ +.. .+..-..++++|..|
T Consensus 266 NlsWc~l~~~~---------------------------Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~L 318 (419)
T KOG2120|consen 266 NLSWCFLFTEK---------------------------VTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHL 318 (419)
T ss_pred CchHhhccchh---------------------------hhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeee
Confidence 55555443221 11110 111456666666652 111 111223456777777
Q ss_pred EccCCc-ccccCCccccCCCCccEEECcCCCcCccccchh---hcCCCCCCEEecccccC
Q 037325 270 DLGSND-LQGDIPDGFASLNSLQELDLSGNSFLGGQLSRN---LGKLCNLRTMILSRNNI 325 (598)
Q Consensus 270 ~l~~n~-l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~---l~~l~~L~~L~l~~n~l 325 (598)
|+++|. ++......|.+++.|++|.++.|. +.+|.. +...|.|.+|++.++--
T Consensus 319 DLSD~v~l~~~~~~~~~kf~~L~~lSlsRCY---~i~p~~~~~l~s~psl~yLdv~g~vs 375 (419)
T KOG2120|consen 319 DLSDSVMLKNDCFQEFFKFNYLQHLSLSRCY---DIIPETLLELNSKPSLVYLDVFGCVS 375 (419)
T ss_pred ccccccccCchHHHHHHhcchheeeehhhhc---CCChHHeeeeccCcceEEEEeccccC
Confidence 777664 332233345566777777777776 333433 34566777777766643
|
|
| >COG4886 Leucine-rich repeat (LRR) protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.97 E-value=1.4e-09 Score=111.92 Aligned_cols=197 Identities=32% Similarity=0.441 Sum_probs=112.3
Q ss_pred EEeCCCCCCCCCCcchhccCCCCCCEEECcCCCCCcccchhccCCC-CCCEEEccCCCCCCCccChhhhcCCCCCcEEEc
Q 037325 117 YLDLSMNNFTGFQVPEFIGSLKELRYLNLSGSFFSGTIPQTLGNLS-NLLYLDLNNFLDQSNQIDLEWLSGLSSLVYFNL 195 (598)
Q Consensus 117 ~L~Ls~n~l~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~-~L~~L~L~~n~~~~~~~~~~~~~~l~~L~~L~l 195 (598)
.+++..+.+.. -+..+..++.++.|++.+|.++ .+|.....+. +|++|++++|.+.... ..+..+++|+.|++
T Consensus 97 ~l~~~~~~~~~--~~~~~~~~~~l~~L~l~~n~i~-~i~~~~~~~~~nL~~L~l~~N~i~~l~---~~~~~l~~L~~L~l 170 (394)
T COG4886 97 SLDLNLNRLRS--NISELLELTNLTSLDLDNNNIT-DIPPLIGLLKSNLKELDLSDNKIESLP---SPLRNLPNLKNLDL 170 (394)
T ss_pred eeecccccccc--CchhhhcccceeEEecCCcccc-cCccccccchhhcccccccccchhhhh---hhhhcccccccccc
Confidence 57777776642 2344455677888888888887 6666666664 7777777776554321 22566677777777
Q ss_pred CCCCCCCCcccchHhhhcCCCCCEEEcCCCCCCCCCCCCCcCCCCCccEEEccCCCCCCCcchhhhcCCCCCEEEccCCc
Q 037325 196 GGADLSKAGAYWLEVFNKLHSFVELHLPNCNLPSLPLSFPSLNFASLQVLDLSNNDFNSTTPHWLFNITSLLCLDLGSND 275 (598)
Q Consensus 196 ~~n~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~ 275 (598)
++|++.... ......+.|+.|++++|.+..++... .....|+++.+++|... ..+..+.++.++..+.+.+|+
T Consensus 171 ~~N~l~~l~----~~~~~~~~L~~L~ls~N~i~~l~~~~--~~~~~L~~l~~~~N~~~-~~~~~~~~~~~l~~l~l~~n~ 243 (394)
T COG4886 171 SFNDLSDLP----KLLSNLSNLNNLDLSGNKISDLPPEI--ELLSALEELDLSNNSII-ELLSSLSNLKNLSGLELSNNK 243 (394)
T ss_pred CCchhhhhh----hhhhhhhhhhheeccCCccccCchhh--hhhhhhhhhhhcCCcce-ecchhhhhcccccccccCCce
Confidence 777766652 33335666666666666666665421 12234666666666422 233445555555555555555
Q ss_pred ccccCCccccCCCCccEEECcCCCcCccccchhhcCCCCCCEEecccccCCcccc
Q 037325 276 LQGDIPDGFASLNSLQELDLSGNSFLGGQLSRNLGKLCNLRTMILSRNNISSEVS 330 (598)
Q Consensus 276 l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~ 330 (598)
+. ..+..++.+++++.|++++|.+ . .++. ++.+.+++.|+++++.+....+
T Consensus 244 ~~-~~~~~~~~l~~l~~L~~s~n~i-~-~i~~-~~~~~~l~~L~~s~n~~~~~~~ 294 (394)
T COG4886 244 LE-DLPESIGNLSNLETLDLSNNQI-S-SISS-LGSLTNLRELDLSGNSLSNALP 294 (394)
T ss_pred ee-eccchhccccccceeccccccc-c-cccc-ccccCccCEEeccCccccccch
Confidence 54 2244455555566666666652 2 1222 5555555555555555554443
|
|
| >KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.94 E-value=5.7e-10 Score=122.71 Aligned_cols=251 Identities=26% Similarity=0.267 Sum_probs=139.5
Q ss_pred ccccCCCCCCEEeCCCCCCCCCCcchhccCCCCCCEEECcCCCCCcccchhccCCCCCCEEEccCCCCCCCccChhhhcC
Q 037325 107 PSLLQLKDLEYLDLSMNNFTGFQVPEFIGSLKELRYLNLSGSFFSGTIPQTLGNLSNLLYLDLNNFLDQSNQIDLEWLSG 186 (598)
Q Consensus 107 ~~l~~l~~L~~L~Ls~n~l~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~~ 186 (598)
..|..++.|++|||++|.--+ .+|..++++-+||+|+++++.++ .+|..++++.+|.+|++..+...... ......
T Consensus 565 ~ff~~m~~LrVLDLs~~~~l~-~LP~~I~~Li~LryL~L~~t~I~-~LP~~l~~Lk~L~~Lnl~~~~~l~~~--~~i~~~ 640 (889)
T KOG4658|consen 565 EFFRSLPLLRVLDLSGNSSLS-KLPSSIGELVHLRYLDLSDTGIS-HLPSGLGNLKKLIYLNLEVTGRLESI--PGILLE 640 (889)
T ss_pred HHHhhCcceEEEECCCCCccC-cCChHHhhhhhhhcccccCCCcc-ccchHHHHHHhhheeccccccccccc--cchhhh
Confidence 347789999999999875433 59999999999999999999998 89999999999999999875432222 334556
Q ss_pred CCCCcEEEcCCCCCCCCcccchHhhhcCCCCCEEEcCCCCCCCCCCCCCcCCCCCcc----EEEccCCCCCCCcchhhhc
Q 037325 187 LSSLVYFNLGGADLSKAGAYWLEVFNKLHSFVELHLPNCNLPSLPLSFPSLNFASLQ----VLDLSNNDFNSTTPHWLFN 262 (598)
Q Consensus 187 l~~L~~L~l~~n~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~L~----~L~L~~n~l~~~~~~~l~~ 262 (598)
+++|++|.+........ ......+..+..|+.+.......... ..+..+..|. .+.+.++.. ...+..+..
T Consensus 641 L~~Lr~L~l~~s~~~~~-~~~l~el~~Le~L~~ls~~~~s~~~~---e~l~~~~~L~~~~~~l~~~~~~~-~~~~~~~~~ 715 (889)
T KOG4658|consen 641 LQSLRVLRLPRSALSND-KLLLKELENLEHLENLSITISSVLLL---EDLLGMTRLRSLLQSLSIEGCSK-RTLISSLGS 715 (889)
T ss_pred cccccEEEeeccccccc-hhhHHhhhcccchhhheeecchhHhH---hhhhhhHHHHHHhHhhhhccccc-ceeeccccc
Confidence 88899888877652222 11133444555555554433332000 1111222222 223222222 133444666
Q ss_pred CCCCCEEEccCCcccccCCccccC------CCCccEEECcCCCcCccccchhhcCCCCCCEEecccccCCcccchhhhCC
Q 037325 263 ITSLLCLDLGSNDLQGDIPDGFAS------LNSLQELDLSGNSFLGGQLSRNLGKLCNLRTMILSRNNISSEVSDFLDGL 336 (598)
Q Consensus 263 l~~L~~L~l~~n~l~~~~~~~l~~------l~~L~~L~l~~n~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l 336 (598)
+.+|+.|.+.++............ ++++..+.+.++.. ...+.+....++|+.|.+..+.....+......+
T Consensus 716 l~~L~~L~i~~~~~~e~~~~~~~~~~~~~~f~~l~~~~~~~~~~--~r~l~~~~f~~~L~~l~l~~~~~~e~~i~~~k~~ 793 (889)
T KOG4658|consen 716 LGNLEELSILDCGISEIVIEWEESLIVLLCFPNLSKVSILNCHM--LRDLTWLLFAPHLTSLSLVSCRLLEDIIPKLKAL 793 (889)
T ss_pred ccCcceEEEEcCCCchhhcccccccchhhhHHHHHHHHhhcccc--ccccchhhccCcccEEEEecccccccCCCHHHHh
Confidence 777888888777765322211111 22333333333321 2223333445677777777776666555544444
Q ss_pred CCCCCCCCccEEEccCcccccc-CccccCCCCCCCEEEc
Q 037325 337 SECTNSILLEKLELRFNQFTGI-LPISLGSLKNLRHLVL 374 (598)
Q Consensus 337 ~~~~~~~~L~~L~Ls~n~l~~~-~~~~l~~l~~L~~L~l 374 (598)
. .+..+.+..+.+.+. .-...+.++++..+.+
T Consensus 794 ~------~l~~~i~~f~~~~~l~~~~~l~~l~~i~~~~l 826 (889)
T KOG4658|consen 794 L------ELKELILPFNKLEGLRMLCSLGGLPQLYWLPL 826 (889)
T ss_pred h------hcccEEecccccccceeeecCCCCceeEeccc
Confidence 4 344444444444433 2223344444444333
|
|
| >PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A | Back alignment and domain information |
|---|
Probab=98.86 E-value=1.4e-09 Score=78.54 Aligned_cols=61 Identities=39% Similarity=0.550 Sum_probs=44.7
Q ss_pred CCCCeEeCcCCccccccchhccCCCCCCEEECCCCcCccccchhccCCCCCCEEEccCCCC
Q 037325 522 KQLITLVISNNNLSGEIPLLFSNISFLYILDMSNNSLSGSTPESIGSLRTVKFLVLRNNYL 582 (598)
Q Consensus 522 ~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~l~~l~~L~~L~l~~n~l 582 (598)
++|++|++++|+++...+..|.++++|++|++++|+++...|..|.++++|++|++++|+|
T Consensus 1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l 61 (61)
T PF13855_consen 1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL 61 (61)
T ss_dssp TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence 3577777777777744446777777788888887777766666777778888888877764
|
... |
| >KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton] | Back alignment and domain information |
|---|
Probab=98.86 E-value=2.7e-10 Score=104.39 Aligned_cols=140 Identities=28% Similarity=0.288 Sum_probs=81.4
Q ss_pred ceecCccccCCCCCCEEeCCCCCCCCCCcchhccCCCCCCEEECcCCCCCcccchhccCCCCCCEEEccCCCCCCCccCh
Q 037325 102 GGEISPSLLQLKDLEYLDLSMNNFTGFQVPEFIGSLKELRYLNLSGSFFSGTIPQTLGNLSNLLYLDLNNFLDQSNQIDL 181 (598)
Q Consensus 102 ~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~~~~~~~~~ 181 (598)
.|..-..+.-...|+.+|||+|.|+ ++.+++.-+|+++.|++++|++. .+.. +..+++|++|||++|.......
T Consensus 273 ~G~~~~~~dTWq~LtelDLS~N~I~--~iDESvKL~Pkir~L~lS~N~i~-~v~n-La~L~~L~~LDLS~N~Ls~~~G-- 346 (490)
T KOG1259|consen 273 NGSALVSADTWQELTELDLSGNLIT--QIDESVKLAPKLRRLILSQNRIR-TVQN-LAELPQLQLLDLSGNLLAECVG-- 346 (490)
T ss_pred CCceEEecchHhhhhhccccccchh--hhhhhhhhccceeEEecccccee-eehh-hhhcccceEeecccchhHhhhh--
Confidence 3333344555677778888888777 56667677788888888888776 3333 6677777777777765432221
Q ss_pred hhhcCCCCCcEEEcCCCCCCCCcccchHhhhcCCCCCEEEcCCCCCCCCCCCCCcCCCCCccEEEccCCCCC
Q 037325 182 EWLSGLSSLVYFNLGGADLSKAGAYWLEVFNKLHSFVELHLPNCNLPSLPLSFPSLNFASLQVLDLSNNDFN 253 (598)
Q Consensus 182 ~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~L~~L~L~~n~l~ 253 (598)
+-.++-+++.|.++.|.+.+. ..+.++-+|..|++.+|++........+++++-|+.+.+.+|.+.
T Consensus 347 -wh~KLGNIKtL~La~N~iE~L-----SGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl~ 412 (490)
T KOG1259|consen 347 -WHLKLGNIKTLKLAQNKIETL-----SGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNPLA 412 (490)
T ss_pred -hHhhhcCEeeeehhhhhHhhh-----hhhHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCCcc
Confidence 223445556666666655443 344455555555555555555444444445555555555544443
|
|
| >KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton] | Back alignment and domain information |
|---|
Probab=98.80 E-value=1.1e-09 Score=100.49 Aligned_cols=212 Identities=22% Similarity=0.258 Sum_probs=128.1
Q ss_pred ceecCccccCCCCCCEEeCCCCCCCCCCcchhccCCCCCCEEECcCCCCCcccchhccCCCCCCEEEccCCCC-CCCccC
Q 037325 102 GGEISPSLLQLKDLEYLDLSMNNFTGFQVPEFIGSLKELRYLNLSGSFFSGTIPQTLGNLSNLLYLDLNNFLD-QSNQID 180 (598)
Q Consensus 102 ~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~~-~~~~~~ 180 (598)
...+|-.+.-+++|+.+.+|.+.-.. +-+....-|-|+++.+.+..+. ..|..+ -...+ -|.....- ......
T Consensus 203 ~~~l~f~l~~f~~l~~~~~s~~~~~~--i~~~~~~kptl~t~~v~~s~~~-~~~~l~-pe~~~--~D~~~~E~~t~~G~~ 276 (490)
T KOG1259|consen 203 PNRLSFNLNAFRNLKTLKFSALSTEN--IVDIELLKPTLQTICVHNTTIQ-DVPSLL-PETIL--ADPSGSEPSTSNGSA 276 (490)
T ss_pred ccccccchHHhhhhheeeeeccchhh--eeceeecCchhheeeeeccccc-cccccc-chhhh--cCccCCCCCccCCce
Confidence 34455567778889999888875442 2222233478889988877655 222211 11111 11111000 011111
Q ss_pred hhhhcCCCCCcEEEcCCCCCCCCcccchHhhhcCCCCCEEEcCCCCCCCCCCCCCcCCCCCccEEEccCCCCCCCcchhh
Q 037325 181 LEWLSGLSSLVYFNLGGADLSKAGAYWLEVFNKLHSFVELHLPNCNLPSLPLSFPSLNFASLQVLDLSNNDFNSTTPHWL 260 (598)
Q Consensus 181 ~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l 260 (598)
...+...+.|+.+++++|.++.+. +++.-.|.++.|+++.|.+..+.. +..+++|+.||+++|.++ .+..|-
T Consensus 277 ~~~~dTWq~LtelDLS~N~I~~iD----ESvKL~Pkir~L~lS~N~i~~v~n---La~L~~L~~LDLS~N~Ls-~~~Gwh 348 (490)
T KOG1259|consen 277 LVSADTWQELTELDLSGNLITQID----ESVKLAPKLRRLILSQNRIRTVQN---LAELPQLQLLDLSGNLLA-ECVGWH 348 (490)
T ss_pred EEecchHhhhhhccccccchhhhh----hhhhhccceeEEeccccceeeehh---hhhcccceEeecccchhH-hhhhhH
Confidence 223455567888888888877663 566677788888888887776643 445677888888888766 344455
Q ss_pred hcCCCCCEEEccCCcccccCCccccCCCCccEEECcCCCcCccccchhhcCCCCCCEEecccccCCccc
Q 037325 261 FNITSLLCLDLGSNDLQGDIPDGFASLNSLQELDLSGNSFLGGQLSRNLGKLCNLRTMILSRNNISSEV 329 (598)
Q Consensus 261 ~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~ 329 (598)
.++-++++|.++.|.+.. -..++.+-+|..||+++|++-.-.-...++++|.|+++.+.+|.+.+..
T Consensus 349 ~KLGNIKtL~La~N~iE~--LSGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl~~~v 415 (490)
T KOG1259|consen 349 LKLGNIKTLKLAQNKIET--LSGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNPLAGSV 415 (490)
T ss_pred hhhcCEeeeehhhhhHhh--hhhhHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCCccccc
Confidence 566777888888777642 2345566677777888877433333455677777777777777766543
|
|
| >KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.72 E-value=9.6e-09 Score=113.20 Aligned_cols=222 Identities=22% Similarity=0.263 Sum_probs=138.2
Q ss_pred cCCCCCcceecCccccCCCCCCEEeCCCCCCCCCCcchhccCCCCCCEEECcCCCCCcccchhccCCCCCCEEEccCCCC
Q 037325 95 DDAGHELGGEISPSLLQLKDLEYLDLSMNNFTGFQVPEFIGSLKELRYLNLSGSFFSGTIPQTLGNLSNLLYLDLNNFLD 174 (598)
Q Consensus 95 ~~~~~~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~~ 174 (598)
+++++.-.+.+|..++.+-+||||++++..+. .+|..+.+++.|.+|++.++.....+|.....+++||+|.+.....
T Consensus 577 DLs~~~~l~~LP~~I~~Li~LryL~L~~t~I~--~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~~ 654 (889)
T KOG4658|consen 577 DLSGNSSLSKLPSSIGELVHLRYLDLSDTGIS--HLPSGLGNLKKLIYLNLEVTGRLESIPGILLELQSLRVLRLPRSAL 654 (889)
T ss_pred ECCCCCccCcCChHHhhhhhhhcccccCCCcc--ccchHHHHHHhhheeccccccccccccchhhhcccccEEEeecccc
Confidence 33435666889999999999999999999999 6999999999999999999876656677777799999999987543
Q ss_pred CCCccChhhhcCCCCCcEEEcCCCCCCCCcccchHhhhcCCCCC----EEEcCCCCCCCCCCCCCcCCCCCccEEEccCC
Q 037325 175 QSNQIDLEWLSGLSSLVYFNLGGADLSKAGAYWLEVFNKLHSFV----ELHLPNCNLPSLPLSFPSLNFASLQVLDLSNN 250 (598)
Q Consensus 175 ~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~l~~L~----~L~l~~~~l~~~~~~~~~~~l~~L~~L~L~~n 250 (598)
.........+.++.+|+.+....... .. ...+..+++|. .+.+.++...... .....+.+|+.|.+.++
T Consensus 655 ~~~~~~l~el~~Le~L~~ls~~~~s~-~~----~e~l~~~~~L~~~~~~l~~~~~~~~~~~--~~~~~l~~L~~L~i~~~ 727 (889)
T KOG4658|consen 655 SNDKLLLKELENLEHLENLSITISSV-LL----LEDLLGMTRLRSLLQSLSIEGCSKRTLI--SSLGSLGNLEELSILDC 727 (889)
T ss_pred ccchhhHHhhhcccchhhheeecchh-Hh----HhhhhhhHHHHHHhHhhhhcccccceee--cccccccCcceEEEEcC
Confidence 33333334456666666666543332 11 12233333333 3333333322222 34567788999999988
Q ss_pred CCCCCcchhhhc------CCCCCEEEccCCcccccCCccccCCCCccEEECcCCCcCccccchhhcCCCCCCEEeccccc
Q 037325 251 DFNSTTPHWLFN------ITSLLCLDLGSNDLQGDIPDGFASLNSLQELDLSGNSFLGGQLSRNLGKLCNLRTMILSRNN 324 (598)
Q Consensus 251 ~l~~~~~~~l~~------l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~l~~l~~L~~L~l~~n~ 324 (598)
.+......+... ++++..+.+.++... ..+.+....++|+.|.+..+.... .+......+..++.+.+..+.
T Consensus 728 ~~~e~~~~~~~~~~~~~~f~~l~~~~~~~~~~~-r~l~~~~f~~~L~~l~l~~~~~~e-~~i~~~k~~~~l~~~i~~f~~ 805 (889)
T KOG4658|consen 728 GISEIVIEWEESLIVLLCFPNLSKVSILNCHML-RDLTWLLFAPHLTSLSLVSCRLLE-DIIPKLKALLELKELILPFNK 805 (889)
T ss_pred CCchhhcccccccchhhhHHHHHHHHhhccccc-cccchhhccCcccEEEEecccccc-cCCCHHHHhhhcccEEecccc
Confidence 876433322211 223333333333222 222333467899999999998444 444444455556554455444
Q ss_pred CCc
Q 037325 325 ISS 327 (598)
Q Consensus 325 l~~ 327 (598)
+.+
T Consensus 806 ~~~ 808 (889)
T KOG4658|consen 806 LEG 808 (889)
T ss_pred ccc
Confidence 443
|
|
| >PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A | Back alignment and domain information |
|---|
Probab=98.71 E-value=1.1e-08 Score=73.87 Aligned_cols=61 Identities=41% Similarity=0.533 Sum_probs=52.5
Q ss_pred cCCcEEEccCCcccccCCchhhcccCCCCCccccCCCCeEeCcCCccccccchhccCCCCCCEEECCCCcC
Q 037325 488 FNVTKLYLRDNSFSGLIPNDIGQNLPFLTDLGNLKQLITLVISNNNLSGEIPLLFSNISFLYILDMSNNSL 558 (598)
Q Consensus 488 ~~L~~L~ls~n~l~~~~p~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ls~N~l 558 (598)
++|++|++++|+++...+..+.. +++|++|++++|.++...|..|.++++|++|++++|+|
T Consensus 1 p~L~~L~l~~n~l~~i~~~~f~~----------l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l 61 (61)
T PF13855_consen 1 PNLESLDLSNNKLTEIPPDSFSN----------LPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL 61 (61)
T ss_dssp TTESEEEETSSTESEECTTTTTT----------GTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred CcCcEEECCCCCCCccCHHHHcC----------CCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence 47899999999999443345554 89999999999999977788999999999999999985
|
... |
| >PF08263 LRRNT_2: Leucine rich repeat N-terminal domain; InterPro: IPR013210 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape [] | Back alignment and domain information |
|---|
Probab=98.70 E-value=2.5e-08 Score=65.67 Aligned_cols=38 Identities=63% Similarity=1.187 Sum_probs=29.7
Q ss_pred HHHHHHHHHHHhcCC-CCCCCCCCCC-C--CCCCCcccEEec
Q 037325 34 EAERKALLQFKQSLR-DPSGQLSSWV-G--EDCCSWSGVSCN 71 (598)
Q Consensus 34 ~~~~~~l~~~~~~~~-~~~~~~~~W~-~--~~~c~w~gv~c~ 71 (598)
++|++||++||+++. +|.+.+.+|. . .+||.|.||+|+
T Consensus 2 ~~d~~aLl~~k~~l~~~~~~~l~~W~~~~~~~~C~W~GV~Cd 43 (43)
T PF08263_consen 2 NQDRQALLAFKKSLNNDPSGVLSSWNPSSDSDPCSWSGVTCD 43 (43)
T ss_dssp HHHHHHHHHHHHCTT-SC-CCCTT--TT--S-CCCSTTEEE-
T ss_pred cHHHHHHHHHHHhcccccCcccccCCCcCCCCCeeeccEEeC
Confidence 679999999999997 5668899994 3 699999999995
|
LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. This domain is often found at the N terminus of tandem leucine rich repeats.; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1OGQ_A. |
| >KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.69 E-value=1.6e-09 Score=111.65 Aligned_cols=129 Identities=28% Similarity=0.279 Sum_probs=66.4
Q ss_pred CCCCCCEEeCCCCCCCCCCcchhccCCCCCCEEECcCCCCCcccchhccCCCCCCEEEccCCCCCCCccChhhhcCCCCC
Q 037325 111 QLKDLEYLDLSMNNFTGFQVPEFIGSLKELRYLNLSGSFFSGTIPQTLGNLSNLLYLDLNNFLDQSNQIDLEWLSGLSSL 190 (598)
Q Consensus 111 ~l~~L~~L~Ls~n~l~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~~l~~L 190 (598)
.+..++.+++..|.+.. +-..+..+++|++|++..|++. .+...+..+++|++|++++|.+..... +..++.|
T Consensus 70 ~l~~l~~l~l~~n~i~~--~~~~l~~~~~l~~l~l~~n~i~-~i~~~l~~~~~L~~L~ls~N~I~~i~~----l~~l~~L 142 (414)
T KOG0531|consen 70 SLTSLKELNLRQNLIAK--ILNHLSKLKSLEALDLYDNKIE-KIENLLSSLVNLQVLDLSFNKITKLEG----LSTLTLL 142 (414)
T ss_pred HhHhHHhhccchhhhhh--hhcccccccceeeeeccccchh-hcccchhhhhcchheeccccccccccc----hhhccch
Confidence 45566666666666652 2333556677777777777766 333335556666666666655433222 4444445
Q ss_pred cEEEcCCCCCCCCcccchHhhhcCCCCCEEEcCCCCCCCCCCCCCcCCCCCccEEEccCCCC
Q 037325 191 VYFNLGGADLSKAGAYWLEVFNKLHSFVELHLPNCNLPSLPLSFPSLNFASLQVLDLSNNDF 252 (598)
Q Consensus 191 ~~L~l~~n~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~L~~L~L~~n~l 252 (598)
+.|++.+|.+.... .+..++.|+.+++++|.+..+.... ...+.+++.+.+.+|.+
T Consensus 143 ~~L~l~~N~i~~~~-----~~~~l~~L~~l~l~~n~i~~ie~~~-~~~~~~l~~l~l~~n~i 198 (414)
T KOG0531|consen 143 KELNLSGNLISDIS-----GLESLKSLKLLDLSYNRIVDIENDE-LSELISLEELDLGGNSI 198 (414)
T ss_pred hhheeccCcchhcc-----CCccchhhhcccCCcchhhhhhhhh-hhhccchHHHhccCCch
Confidence 55555555555442 2333444555555555444443210 22334444444444443
|
|
| >KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.62 E-value=6.7e-10 Score=101.77 Aligned_cols=166 Identities=22% Similarity=0.164 Sum_probs=104.1
Q ss_pred ccccCCCCCCEEeCCCCCCCCCCcchhccCCCCCCEEECcCC-CCCc-ccchhccCCCCCCEEEccCCCCCCCccChhhh
Q 037325 107 PSLLQLKDLEYLDLSMNNFTGFQVPEFIGSLKELRYLNLSGS-FFSG-TIPQTLGNLSNLLYLDLNNFLDQSNQIDLEWL 184 (598)
Q Consensus 107 ~~l~~l~~L~~L~Ls~n~l~~~~~p~~~~~l~~L~~L~L~~n-~l~~-~~p~~l~~l~~L~~L~L~~n~~~~~~~~~~~~ 184 (598)
.-+..|.+|+.|.|.++++.+. +-..+.+..+|+.|+++.+ .++. ...--+.+|+.|..|++++|...........-
T Consensus 204 ~iLs~C~kLk~lSlEg~~LdD~-I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~LNlsWc~l~~~~Vtv~V~ 282 (419)
T KOG2120|consen 204 GILSQCSKLKNLSLEGLRLDDP-IVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDELNLSWCFLFTEKVTVAVA 282 (419)
T ss_pred HHHHHHHhhhhccccccccCcH-HHHHHhccccceeeccccccccchhHHHHHHHhhhhHhhcCchHhhccchhhhHHHh
Confidence 3567899999999999999986 8888999999999999986 4542 12234678999999999999875544333223
Q ss_pred cCCCCCcEEEcCCCCCCCCcccchHhhhcCCCCCEEEcCCCCCCCCCCCCCcCCCCCccEEEccCCCCCCCcchhhhcCC
Q 037325 185 SGLSSLVYFNLGGADLSKAGAYWLEVFNKLHSFVELHLPNCNLPSLPLSFPSLNFASLQVLDLSNNDFNSTTPHWLFNIT 264 (598)
Q Consensus 185 ~~l~~L~~L~l~~n~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~ 264 (598)
.--++|+.|+++++.-.-....+..-...+++|.+|++++|. .++......+.+++
T Consensus 283 hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v------------------------~l~~~~~~~~~kf~ 338 (419)
T KOG2120|consen 283 HISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSV------------------------MLKNDCFQEFFKFN 338 (419)
T ss_pred hhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeecccccc------------------------ccCchHHHHHHhcc
Confidence 334677888887764322211112223344555555554442 23333334455566
Q ss_pred CCCEEEccCCcccccCCc---cccCCCCccEEECcCCC
Q 037325 265 SLLCLDLGSNDLQGDIPD---GFASLNSLQELDLSGNS 299 (598)
Q Consensus 265 ~L~~L~l~~n~l~~~~~~---~l~~l~~L~~L~l~~n~ 299 (598)
.|++|.++.|.. .+|. .+...|+|.+|++.++-
T Consensus 339 ~L~~lSlsRCY~--i~p~~~~~l~s~psl~yLdv~g~v 374 (419)
T KOG2120|consen 339 YLQHLSLSRCYD--IIPETLLELNSKPSLVYLDVFGCV 374 (419)
T ss_pred hheeeehhhhcC--CChHHeeeeccCcceEEEEecccc
Confidence 666666666542 2332 23456677777777763
|
|
| >KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.60 E-value=6.5e-09 Score=107.16 Aligned_cols=86 Identities=28% Similarity=0.280 Sum_probs=55.1
Q ss_pred CcEEEccCCcccccCCchhhcccCCCCCccccCCCCeEeCcCCccccccchhccCCCCCCEEECCCCcCccc---cchh-
Q 037325 490 VTKLYLRDNSFSGLIPNDIGQNLPFLTDLGNLKQLITLVISNNNLSGEIPLLFSNISFLYILDMSNNSLSGS---TPES- 565 (598)
Q Consensus 490 L~~L~ls~n~l~~~~p~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ls~N~l~~~---~p~~- 565 (598)
|+.+++++|++. .++..+.. +..+..|++.+|.+...- .+...+.+..+....|.+... ....
T Consensus 234 L~~l~l~~n~i~-~~~~~~~~----------~~~l~~l~~~~n~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 300 (414)
T KOG0531|consen 234 LRELYLSGNRIS-RSPEGLEN----------LKNLPVLDLSSNRISNLE--GLERLPKLSELWLNDNKLALSEAISQEYI 300 (414)
T ss_pred HHHHhcccCccc-cccccccc----------cccccccchhhccccccc--cccccchHHHhccCcchhcchhhhhcccc
Confidence 778888888876 23222222 677888888888876321 244556677777777776522 1121
Q ss_pred ccCCCCCCEEEccCCCCcccCCc
Q 037325 566 IGSLRTVKFLVLRNNYLSGKLPL 588 (598)
Q Consensus 566 l~~l~~L~~L~l~~n~l~g~~P~ 588 (598)
......++.+.+.+|++....+.
T Consensus 301 ~~~~~~~~~~~~~~~~~~~~~~~ 323 (414)
T KOG0531|consen 301 TSAAPTLVTLTLELNPIRKISSL 323 (414)
T ss_pred ccccccccccccccCcccccccc
Confidence 45667888888888887765553
|
|
| >KOG4341 consensus F-box protein containing LRR [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.58 E-value=2e-09 Score=103.35 Aligned_cols=284 Identities=19% Similarity=0.123 Sum_probs=123.6
Q ss_pred CCCEEeCCCCCCCCC-CcchhccCCCCCCEEECcCCC-CCcccchhc-cCCCCCCEEEccCCCCCCCccChhhhcCCCCC
Q 037325 114 DLEYLDLSMNNFTGF-QVPEFIGSLKELRYLNLSGSF-FSGTIPQTL-GNLSNLLYLDLNNFLDQSNQIDLEWLSGLSSL 190 (598)
Q Consensus 114 ~L~~L~Ls~n~l~~~-~~p~~~~~l~~L~~L~L~~n~-l~~~~p~~l-~~l~~L~~L~L~~n~~~~~~~~~~~~~~l~~L 190 (598)
.|+.|.++++.-.+. .+-.+..+++++++|++.+|. ++...-..+ ..+++|++|++..|.............++++|
T Consensus 139 ~lk~LSlrG~r~v~~sslrt~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~kL 218 (483)
T KOG4341|consen 139 FLKELSLRGCRAVGDSSLRTFASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEGCRKL 218 (483)
T ss_pred ccccccccccccCCcchhhHHhhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHhhhhH
Confidence 455555555432211 222333445555555555553 221111112 34555555555554332222212233455556
Q ss_pred cEEEcCCCCCCCCcccchHhhhcCCCCCEEEcCCCCCCCCCC-CCCcCCCCCccEEEccCC-CCCCCcchh-hhcCCCCC
Q 037325 191 VYFNLGGADLSKAGAYWLEVFNKLHSFVELHLPNCNLPSLPL-SFPSLNFASLQVLDLSNN-DFNSTTPHW-LFNITSLL 267 (598)
Q Consensus 191 ~~L~l~~n~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~-~~~~~~l~~L~~L~L~~n-~l~~~~~~~-l~~l~~L~ 267 (598)
++++++.+...... .+...+.++..++.+...+|.-.+... ......+..+.++++..| .+++..-.. -..+..|+
T Consensus 219 ~~lNlSwc~qi~~~-gv~~~~rG~~~l~~~~~kGC~e~~le~l~~~~~~~~~i~~lnl~~c~~lTD~~~~~i~~~c~~lq 297 (483)
T KOG4341|consen 219 KYLNLSWCPQISGN-GVQALQRGCKELEKLSLKGCLELELEALLKAAAYCLEILKLNLQHCNQLTDEDLWLIACGCHALQ 297 (483)
T ss_pred HHhhhccCchhhcC-cchHHhccchhhhhhhhcccccccHHHHHHHhccChHhhccchhhhccccchHHHHHhhhhhHhh
Confidence 66665555322110 012233444445555444442211100 011112233444444444 233222111 12345566
Q ss_pred EEEccCCcccccCC-ccc-cCCCCccEEECcCCCcCccccchhhc-CCCCCCEEecccccCCcccchhhhCCCCCCCCCC
Q 037325 268 CLDLGSNDLQGDIP-DGF-ASLNSLQELDLSGNSFLGGQLSRNLG-KLCNLRTMILSRNNISSEVSDFLDGLSECTNSIL 344 (598)
Q Consensus 268 ~L~l~~n~l~~~~~-~~l-~~l~~L~~L~l~~n~~~~~~~~~~l~-~l~~L~~L~l~~n~l~~~~~~~~~~l~~~~~~~~ 344 (598)
.++.+++...+..+ ..+ .+..+|+.+-++.|+-++..-...++ +++.|+.+++.++...... .+..+. .+++.
T Consensus 298 ~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~--tL~sls--~~C~~ 373 (483)
T KOG4341|consen 298 VLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDG--TLASLS--RNCPR 373 (483)
T ss_pred hhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhh--hHhhhc--cCCch
Confidence 66666554322111 112 34566666666666533322222222 4556666666665443222 122211 22235
Q ss_pred ccEEEccCccc-ccc----CccccCCCCCCCEEEccCCcCC-ccchhhccCCCCCCEEeCcCCc
Q 037325 345 LEKLELRFNQF-TGI----LPISLGSLKNLRHLVLWQNSFL-GSIPPSIGNLTLLKELYLASNQ 402 (598)
Q Consensus 345 L~~L~Ls~n~l-~~~----~~~~l~~l~~L~~L~ls~n~l~-~~~~~~l~~l~~L~~L~l~~n~ 402 (598)
|+.+.++++.. ++. +...-..+..|+.+.+++++.. +..-+.+..+++|+.+++-+++
T Consensus 374 lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~Le~l~~c~~Leri~l~~~q 437 (483)
T KOG4341|consen 374 LRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDATLEHLSICRNLERIELIDCQ 437 (483)
T ss_pred hccCChhhhhhhhhhhhhhhhhccccccccceeeecCCCCchHHHHHHHhhCcccceeeeechh
Confidence 66666666533 211 0111234556777777777543 2334456667777777777664
|
|
| >COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.44 E-value=7.1e-08 Score=87.57 Aligned_cols=229 Identities=20% Similarity=0.151 Sum_probs=114.3
Q ss_pred ccCCCCCCEEeCCCCCCCCC---CcchhccCCCCCCEEECcCCCC---CcccchhccCCCCCCEEEccCCCCCCCccChh
Q 037325 109 LLQLKDLEYLDLSMNNFTGF---QVPEFIGSLKELRYLNLSGSFF---SGTIPQTLGNLSNLLYLDLNNFLDQSNQIDLE 182 (598)
Q Consensus 109 l~~l~~L~~L~Ls~n~l~~~---~~p~~~~~l~~L~~L~L~~n~l---~~~~p~~l~~l~~L~~L~L~~n~~~~~~~~~~ 182 (598)
+..+..+..++||+|.|... .+...+.+-.+|+..+++.-.. ...+|..+.- -..
T Consensus 26 l~~~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~-------------------Ll~ 86 (388)
T COG5238 26 LEMMDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVM-------------------LLK 86 (388)
T ss_pred HHhhcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHH-------------------HHH
Confidence 34467777777777776543 1222344456666666654321 1223332210 012
Q ss_pred hhcCCCCCcEEEcCCCCCCCCcc-cchHhhhcCCCCCEEEcCCCCCCCCCCC------------CCcCCCCCccEEEccC
Q 037325 183 WLSGLSSLVYFNLGGADLSKAGA-YWLEVFNKLHSFVELHLPNCNLPSLPLS------------FPSLNFASLQVLDLSN 249 (598)
Q Consensus 183 ~~~~l~~L~~L~l~~n~~~~~~~-~~~~~~~~l~~L~~L~l~~~~l~~~~~~------------~~~~~l~~L~~L~L~~ 249 (598)
.+-+|++|+.+++++|-+....+ .+.+.+.+-+.|++|.+++|.+..+... .-...-|.|+++....
T Consensus 87 aLlkcp~l~~v~LSDNAfg~~~~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgr 166 (388)
T COG5238 87 ALLKCPRLQKVDLSDNAFGSEFPEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGR 166 (388)
T ss_pred HHhcCCcceeeeccccccCcccchHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEecc
Confidence 24445555555555555443321 1233445556666666666655443221 1122346788888888
Q ss_pred CCCCCCcch----hhhcCCCCCEEEccCCcccccCC-----ccccCCCCccEEECcCCCcCc---cccchhhcCCCCCCE
Q 037325 250 NDFNSTTPH----WLFNITSLLCLDLGSNDLQGDIP-----DGFASLNSLQELDLSGNSFLG---GQLSRNLGKLCNLRT 317 (598)
Q Consensus 250 n~l~~~~~~----~l~~l~~L~~L~l~~n~l~~~~~-----~~l~~l~~L~~L~l~~n~~~~---~~~~~~l~~l~~L~~ 317 (598)
|++...... .+..-.+|+.+.+..|.+.-... ..+..+.+|+.|+++.|.+.. ..+...+..++.|+.
T Consensus 167 NRlengs~~~~a~~l~sh~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al~~W~~lrE 246 (388)
T COG5238 167 NRLENGSKELSAALLESHENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALCEWNLLRE 246 (388)
T ss_pred chhccCcHHHHHHHHHhhcCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHHHhcccchhhh
Confidence 877543221 12223578888888776642211 122346677777777776321 122344456666777
Q ss_pred EecccccCCcccchhhhCCCCCCCCCCccEEEccCcccc
Q 037325 318 MILSRNNISSEVSDFLDGLSECTNSILLEKLELRFNQFT 356 (598)
Q Consensus 318 L~l~~n~l~~~~~~~~~~l~~~~~~~~L~~L~Ls~n~l~ 356 (598)
|.+.+|-++......+-....-...++|..|...+|.+.
T Consensus 247 L~lnDClls~~G~~~v~~~f~e~~~p~l~~L~~~Yne~~ 285 (388)
T COG5238 247 LRLNDCLLSNEGVKSVLRRFNEKFVPNLMPLPGDYNERR 285 (388)
T ss_pred ccccchhhccccHHHHHHHhhhhcCCCccccccchhhhc
Confidence 777777666555432211100011124555555555443
|
|
| >KOG4341 consensus F-box protein containing LRR [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.40 E-value=2.9e-08 Score=95.58 Aligned_cols=301 Identities=19% Similarity=0.117 Sum_probs=189.5
Q ss_pred CCCCEEECcCCCCCc--ccchhccCCCCCCEEEccCCCCCCCccChhhhcCCCCCcEEEcCCC-CCCCCcccchHhhhcC
Q 037325 138 KELRYLNLSGSFFSG--TIPQTLGNLSNLLYLDLNNFLDQSNQIDLEWLSGLSSLVYFNLGGA-DLSKAGAYWLEVFNKL 214 (598)
Q Consensus 138 ~~L~~L~L~~n~l~~--~~p~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~~l~~L~~L~l~~n-~~~~~~~~~~~~~~~l 214 (598)
..|+.|.+++++=.+ .+-.....++++++|.+.+|...........-..+++|+++++..+ .+++... ......+
T Consensus 138 g~lk~LSlrG~r~v~~sslrt~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~L--k~la~gC 215 (483)
T KOG4341|consen 138 GFLKELSLRGCRAVGDSSLRTFASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSL--KYLAEGC 215 (483)
T ss_pred cccccccccccccCCcchhhHHhhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHH--HHHHHhh
Confidence 468888999886443 2333446899999999999875444333445577899999999984 3444331 2345679
Q ss_pred CCCCEEEcCCC-CCCCCCCCCCcCCCCCccEEEccCCCCCCCcchhh----hcCCCCCEEEccCCc-ccccCCccc-cCC
Q 037325 215 HSFVELHLPNC-NLPSLPLSFPSLNFASLQVLDLSNNDFNSTTPHWL----FNITSLLCLDLGSND-LQGDIPDGF-ASL 287 (598)
Q Consensus 215 ~~L~~L~l~~~-~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l----~~l~~L~~L~l~~n~-l~~~~~~~l-~~l 287 (598)
++|++|+++.| .+++.........+..++.+.+.+|.=. ..+.+ +.+..+.++++..|. +++...-.+ ..+
T Consensus 216 ~kL~~lNlSwc~qi~~~gv~~~~rG~~~l~~~~~kGC~e~--~le~l~~~~~~~~~i~~lnl~~c~~lTD~~~~~i~~~c 293 (483)
T KOG4341|consen 216 RKLKYLNLSWCPQISGNGVQALQRGCKELEKLSLKGCLEL--ELEALLKAAAYCLEILKLNLQHCNQLTDEDLWLIACGC 293 (483)
T ss_pred hhHHHhhhccCchhhcCcchHHhccchhhhhhhhcccccc--cHHHHHHHhccChHhhccchhhhccccchHHHHHhhhh
Confidence 99999999999 4555444344455666777777776321 11222 234567777766663 332111111 357
Q ss_pred CCccEEECcCCCcCccccchhh-cCCCCCCEEecccccC-CcccchhhhCCCCCCCCCCccEEEccCcccc--ccCcccc
Q 037325 288 NSLQELDLSGNSFLGGQLSRNL-GKLCNLRTMILSRNNI-SSEVSDFLDGLSECTNSILLEKLELRFNQFT--GILPISL 363 (598)
Q Consensus 288 ~~L~~L~l~~n~~~~~~~~~~l-~~l~~L~~L~l~~n~l-~~~~~~~~~~l~~~~~~~~L~~L~Ls~n~l~--~~~~~~l 363 (598)
..|+.++.+++...+...-..+ .++++|+.+.+.+|+. +......++ .++..|+.+++..+... +.+...-
T Consensus 294 ~~lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~-----rn~~~Le~l~~e~~~~~~d~tL~sls 368 (483)
T KOG4341|consen 294 HALQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLG-----RNCPHLERLDLEECGLITDGTLASLS 368 (483)
T ss_pred hHhhhhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhhh-----cCChhhhhhcccccceehhhhHhhhc
Confidence 7899999999874333333333 4678999999998863 322222221 22337999998887432 2233233
Q ss_pred CCCCCCCEEEccCCcCCccc-----hhhccCCCCCCEEeCcCCcCCcccCCCchhhhcCCCCCCEEEccCcc-Cccccch
Q 037325 364 GSLKNLRHLVLWQNSFLGSI-----PPSIGNLTLLKELYLASNQMNGQKISDSYQHLKNQTELRTLVLNKAR-ISDTISD 437 (598)
Q Consensus 364 ~~l~~L~~L~ls~n~l~~~~-----~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~~~~L~~L~l~~n~-l~~~~~~ 437 (598)
.+++.|+.+.+++|...... ...-..+..|+.+.+++++.+. ....+.+..+++|+.+++-+++ ++.....
T Consensus 369 ~~C~~lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~---d~~Le~l~~c~~Leri~l~~~q~vtk~~i~ 445 (483)
T KOG4341|consen 369 RNCPRLRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLIT---DATLEHLSICRNLERIELIDCQDVTKEAIS 445 (483)
T ss_pred cCCchhccCChhhhhhhhhhhhhhhhhccccccccceeeecCCCCch---HHHHHHHhhCcccceeeeechhhhhhhhhH
Confidence 56889999999988543221 1222456778899999987653 3345678889999999999887 5555555
Q ss_pred HHHhcCCCCCEEE
Q 037325 438 WFWQLSLTLDELD 450 (598)
Q Consensus 438 ~~~~~~~~L~~L~ 450 (598)
.+...+|+++..-
T Consensus 446 ~~~~~lp~i~v~a 458 (483)
T KOG4341|consen 446 RFATHLPNIKVHA 458 (483)
T ss_pred HHHhhCccceehh
Confidence 5555566655443
|
|
| >KOG2982 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.40 E-value=1e-07 Score=87.78 Aligned_cols=42 Identities=26% Similarity=0.170 Sum_probs=17.8
Q ss_pred CCCCEEEccCCCCCCCccChhhhcCCCCCcEEEcCCCCCCCC
Q 037325 162 SNLLYLDLNNFLDQSNQIDLEWLSGLSSLVYFNLGGADLSKA 203 (598)
Q Consensus 162 ~~L~~L~L~~n~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~ 203 (598)
+.++.+||.+|.++........+.+++.|+.|+++.|++...
T Consensus 71 ~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~ 112 (418)
T KOG2982|consen 71 TDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSD 112 (418)
T ss_pred hhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCc
Confidence 334444444443333333333344444444444444444433
|
|
| >COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.32 E-value=1.2e-07 Score=86.05 Aligned_cols=193 Identities=29% Similarity=0.221 Sum_probs=104.5
Q ss_pred CCCCCccEEEccCCCCCCCcch----hhhcCCCCCEEEccCCccccc----CCc---------cccCCCCccEEECcCCC
Q 037325 237 LNFASLQVLDLSNNDFNSTTPH----WLFNITSLLCLDLGSNDLQGD----IPD---------GFASLNSLQELDLSGNS 299 (598)
Q Consensus 237 ~~l~~L~~L~L~~n~l~~~~~~----~l~~l~~L~~L~l~~n~l~~~----~~~---------~l~~l~~L~~L~l~~n~ 299 (598)
.+|++|+..+++.|.+....|+ .+++-+.|++|.+.+|.+.-. +.. ....-|.|+.+....|+
T Consensus 89 lkcp~l~~v~LSDNAfg~~~~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgrNR 168 (388)
T COG5238 89 LKCPRLQKVDLSDNAFGSEFPEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGRNR 168 (388)
T ss_pred hcCCcceeeeccccccCcccchHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEeccch
Confidence 3455555666666655544443 344556777777777765311 111 12234678888888877
Q ss_pred cCccccc---hhhcCCCCCCEEecccccCCcccchhh--hCCCCCCCCCCccEEEccCcccccc----CccccCCCCCCC
Q 037325 300 FLGGQLS---RNLGKLCNLRTMILSRNNISSEVSDFL--DGLSECTNSILLEKLELRFNQFTGI----LPISLGSLKNLR 370 (598)
Q Consensus 300 ~~~~~~~---~~l~~l~~L~~L~l~~n~l~~~~~~~~--~~l~~~~~~~~L~~L~Ls~n~l~~~----~~~~l~~l~~L~ 370 (598)
+..+... ..+..-.+|+.+.+..|.+.......+ .++.. +.+|+.||+.+|.++-. +...+..++.|+
T Consensus 169 lengs~~~~a~~l~sh~~lk~vki~qNgIrpegv~~L~~~gl~y---~~~LevLDlqDNtft~~gS~~La~al~~W~~lr 245 (388)
T COG5238 169 LENGSKELSAALLESHENLKEVKIQQNGIRPEGVTMLAFLGLFY---SHSLEVLDLQDNTFTLEGSRYLADALCEWNLLR 245 (388)
T ss_pred hccCcHHHHHHHHHhhcCceeEEeeecCcCcchhHHHHHHHHHH---hCcceeeeccccchhhhhHHHHHHHhcccchhh
Confidence 5333221 123333577888888877765543322 11111 11688888888877633 233445566678
Q ss_pred EEEccCCcCCccchhhc------cCCCCCCEEeCcCCcCCcccCCCch-hh--hcCCCCCCEEEccCccCc
Q 037325 371 HLVLWQNSFLGSIPPSI------GNLTLLKELYLASNQMNGQKISDSY-QH--LKNQTELRTLVLNKARIS 432 (598)
Q Consensus 371 ~L~ls~n~l~~~~~~~l------~~l~~L~~L~l~~n~l~~~~~~~~~-~~--l~~~~~L~~L~l~~n~l~ 432 (598)
.|.+..|-+...-...+ ...|+|..|...+|.+.+.++...+ .. -.+.|-|..|.+.+|++.
T Consensus 246 EL~lnDClls~~G~~~v~~~f~e~~~p~l~~L~~~Yne~~~~~i~~~~l~~~e~~~~p~L~~le~ngNr~~ 316 (388)
T COG5238 246 ELRLNDCLLSNEGVKSVLRRFNEKFVPNLMPLPGDYNERRGGIILDISLNEFEQDAVPLLVDLERNGNRIK 316 (388)
T ss_pred hccccchhhccccHHHHHHHhhhhcCCCccccccchhhhcCceeeeechhhhhhcccHHHHHHHHccCcch
Confidence 88888776654332221 2346777777777776654422211 11 123455555666666654
|
|
| >KOG1859 consensus Leucine-rich repeat proteins [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.30 E-value=7.2e-09 Score=106.03 Aligned_cols=179 Identities=23% Similarity=0.255 Sum_probs=116.4
Q ss_pred CccccCCCCCCEEeCCCCCCCCCCcchhccCCCCCCEEECcCCCCCcccchhc----cC------CCCCCEEEccCCCCC
Q 037325 106 SPSLLQLKDLEYLDLSMNNFTGFQVPEFIGSLKELRYLNLSGSFFSGTIPQTL----GN------LSNLLYLDLNNFLDQ 175 (598)
Q Consensus 106 ~~~l~~l~~L~~L~Ls~n~l~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l----~~------l~~L~~L~L~~n~~~ 175 (598)
|-.|..++.|+.|.|.++.+.. .-....--.+|++|.-++ .+. .+-..| +. .-+|.+.+.++|.+.
T Consensus 102 pi~ifpF~sLr~LElrg~~L~~--~~GL~~lr~qLe~LIC~~-Sl~-Al~~v~ascggd~~ns~~Wn~L~~a~fsyN~L~ 177 (1096)
T KOG1859|consen 102 PISIFPFRSLRVLELRGCDLST--AKGLQELRHQLEKLICHN-SLD-ALRHVFASCGGDISNSPVWNKLATASFSYNRLV 177 (1096)
T ss_pred CceeccccceeeEEecCcchhh--hhhhHHHHHhhhhhhhhc-cHH-HHHHHHHHhccccccchhhhhHhhhhcchhhHH
Confidence 5567889999999999988762 211111113455543322 221 111111 11 124666666666554
Q ss_pred CCccChhhhcCCCCCcEEEcCCCCCCCCcccchHhhhcCCCCCEEEcCCCCCCCCCCCCCcCCCCCccEEEccCCCCCCC
Q 037325 176 SNQIDLEWLSGLSSLVYFNLGGADLSKAGAYWLEVFNKLHSFVELHLPNCNLPSLPLSFPSLNFASLQVLDLSNNDFNST 255 (598)
Q Consensus 176 ~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~ 255 (598)
.... .+.-++.+++|+|++|++++. +.+..|+.|++||++.|.+..++. .....+. |+.|.+++|.++.
T Consensus 178 ~mD~---SLqll~ale~LnLshNk~~~v-----~~Lr~l~~LkhLDlsyN~L~~vp~-l~~~gc~-L~~L~lrnN~l~t- 246 (1096)
T KOG1859|consen 178 LMDE---SLQLLPALESLNLSHNKFTKV-----DNLRRLPKLKHLDLSYNCLRHVPQ-LSMVGCK-LQLLNLRNNALTT- 246 (1096)
T ss_pred hHHH---HHHHHHHhhhhccchhhhhhh-----HHHHhcccccccccccchhccccc-cchhhhh-heeeeecccHHHh-
Confidence 3332 356677888888888888875 478888999999999998888876 3333444 9999999998763
Q ss_pred cchhhhcCCCCCEEEccCCcccccCC-ccccCCCCccEEECcCCCc
Q 037325 256 TPHWLFNITSLLCLDLGSNDLQGDIP-DGFASLNSLQELDLSGNSF 300 (598)
Q Consensus 256 ~~~~l~~l~~L~~L~l~~n~l~~~~~-~~l~~l~~L~~L~l~~n~~ 300 (598)
...+.++++|+.||+++|-+.+.-. ..+..+..|+.|.|.+|++
T Consensus 247 -L~gie~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl 291 (1096)
T KOG1859|consen 247 -LRGIENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPL 291 (1096)
T ss_pred -hhhHHhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCcc
Confidence 2447788899999999987764321 2244567788889999885
|
|
| >KOG2982 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.28 E-value=3.5e-07 Score=84.28 Aligned_cols=115 Identities=25% Similarity=0.293 Sum_probs=57.7
Q ss_pred ccCCCCCCEEeCCCCCCCCCCcchhc-cCCCCCCEEECcCCCCCc--ccchhccCCCCCCEEEccCCCCCCCccChhhhc
Q 037325 109 LLQLKDLEYLDLSMNNFTGFQVPEFI-GSLKELRYLNLSGSFFSG--TIPQTLGNLSNLLYLDLNNFLDQSNQIDLEWLS 185 (598)
Q Consensus 109 l~~l~~L~~L~Ls~n~l~~~~~p~~~-~~l~~L~~L~L~~n~l~~--~~p~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~ 185 (598)
++..+.++.|-+.++.+.....-..+ ...+.++.|||.+|.++. .+..-+.++|.|++|+++.|+......... .
T Consensus 41 v~s~ra~ellvln~~~id~~gd~~~~~~~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp--~ 118 (418)
T KOG2982|consen 41 VSSLRALELLVLNGSIIDNEGDVMLFGSSVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLP--L 118 (418)
T ss_pred eccccchhhheecCCCCCcchhHHHHHHHhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCc--c
Confidence 33344444455555544432111112 234556666666666552 333344566666666666655432222111 2
Q ss_pred CCCCCcEEEcCCCCCCCCcccchHhhhcCCCCCEEEcCCCCC
Q 037325 186 GLSSLVYFNLGGADLSKAGAYWLEVFNKLHSFVELHLPNCNL 227 (598)
Q Consensus 186 ~l~~L~~L~l~~n~~~~~~~~~~~~~~~l~~L~~L~l~~~~l 227 (598)
..++|+.|-+.+..+..... ...+..+|.+++|+++.|.+
T Consensus 119 p~~nl~~lVLNgT~L~w~~~--~s~l~~lP~vtelHmS~N~~ 158 (418)
T KOG2982|consen 119 PLKNLRVLVLNGTGLSWTQS--TSSLDDLPKVTELHMSDNSL 158 (418)
T ss_pred cccceEEEEEcCCCCChhhh--hhhhhcchhhhhhhhccchh
Confidence 34566666666665543321 34556677777777777743
|
|
| >KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.21 E-value=1.1e-07 Score=77.37 Aligned_cols=93 Identities=20% Similarity=0.226 Sum_probs=68.3
Q ss_pred cCCcEEEccCCcccccCCchhhcccCCCCCccccCCCCeEeCcCCccccccchhccCCCCCCEEECCCCcCccccchhcc
Q 037325 488 FNVTKLYLRDNSFSGLIPNDIGQNLPFLTDLGNLKQLITLVISNNNLSGEIPLLFSNISFLYILDMSNNSLSGSTPESIG 567 (598)
Q Consensus 488 ~~L~~L~ls~n~l~~~~p~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~l~ 567 (598)
+.++.|++++|.++ .+|.++.. ++.|+.|+++.|.+. ..|+.+..+.++-.||..+|.+. .+|..+-
T Consensus 77 ~t~t~lNl~~neis-dvPeE~Aa----------m~aLr~lNl~~N~l~-~~p~vi~~L~~l~~Lds~~na~~-eid~dl~ 143 (177)
T KOG4579|consen 77 PTATTLNLANNEIS-DVPEELAA----------MPALRSLNLRFNPLN-AEPRVIAPLIKLDMLDSPENARA-EIDVDLF 143 (177)
T ss_pred chhhhhhcchhhhh-hchHHHhh----------hHHhhhcccccCccc-cchHHHHHHHhHHHhcCCCCccc-cCcHHHh
Confidence 34566667777776 67877766 889999999999998 77888888888889999999887 6666554
Q ss_pred CCCCCCEEEccCCCCcccCCcCccCc
Q 037325 568 SLRTVKFLVLRNNYLSGKLPLSLKNC 593 (598)
Q Consensus 568 ~l~~L~~L~l~~n~l~g~~P~~~~~~ 593 (598)
--+..-..++.++++.+.-|..++.+
T Consensus 144 ~s~~~al~~lgnepl~~~~~~klqa~ 169 (177)
T KOG4579|consen 144 YSSLPALIKLGNEPLGDETKKKLQAL 169 (177)
T ss_pred ccccHHHHHhcCCcccccCccccccc
Confidence 44445555667788887666655443
|
|
| >KOG1859 consensus Leucine-rich repeat proteins [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.17 E-value=2.8e-08 Score=101.80 Aligned_cols=129 Identities=26% Similarity=0.237 Sum_probs=97.6
Q ss_pred CCCCEEeCCCCCCCCCCcchhccCCCCCCEEECcCCCCCcccchhccCCCCCCEEEccCCCCCCCccChhhhcCCCCCcE
Q 037325 113 KDLEYLDLSMNNFTGFQVPEFIGSLKELRYLNLSGSFFSGTIPQTLGNLSNLLYLDLNNFLDQSNQIDLEWLSGLSSLVY 192 (598)
Q Consensus 113 ~~L~~L~Ls~n~l~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~~l~~L~~ 192 (598)
-.|..-+.++|++. .+...+.-++.|+.|+|++|++. ... .+..|++|++|||++|.+...+.. ...++. |+.
T Consensus 164 n~L~~a~fsyN~L~--~mD~SLqll~ale~LnLshNk~~-~v~-~Lr~l~~LkhLDlsyN~L~~vp~l--~~~gc~-L~~ 236 (1096)
T KOG1859|consen 164 NKLATASFSYNRLV--LMDESLQLLPALESLNLSHNKFT-KVD-NLRRLPKLKHLDLSYNCLRHVPQL--SMVGCK-LQL 236 (1096)
T ss_pred hhHhhhhcchhhHH--hHHHHHHHHHHhhhhccchhhhh-hhH-HHHhcccccccccccchhcccccc--chhhhh-hee
Confidence 45667788888887 46677777888999999999887 333 678888999999988876544331 133444 888
Q ss_pred EEcCCCCCCCCcccchHhhhcCCCCCEEEcCCCCCCCCCCCCCcCCCCCccEEEccCCCCC
Q 037325 193 FNLGGADLSKAGAYWLEVFNKLHSFVELHLPNCNLPSLPLSFPSLNFASLQVLDLSNNDFN 253 (598)
Q Consensus 193 L~l~~n~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~L~~L~L~~n~l~ 253 (598)
|++++|.++.. ..+.++.+|+.||+++|-+.+...-..+..+..|++|.|.+|.+-
T Consensus 237 L~lrnN~l~tL-----~gie~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl~ 292 (1096)
T KOG1859|consen 237 LNLRNNALTTL-----RGIENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPLC 292 (1096)
T ss_pred eeecccHHHhh-----hhHHhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCccc
Confidence 89998888765 467888889999999988877665566677788888888888764
|
|
| >PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B | Back alignment and domain information |
|---|
Probab=98.15 E-value=2.2e-06 Score=56.48 Aligned_cols=36 Identities=39% Similarity=0.571 Sum_probs=19.7
Q ss_pred CCCeEeCcCCccccccchhccCCCCCCEEECCCCcCc
Q 037325 523 QLITLVISNNNLSGEIPLLFSNISFLYILDMSNNSLS 559 (598)
Q Consensus 523 ~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ls~N~l~ 559 (598)
+|++|++++|+|+ .+|..++++++|++|++++|+++
T Consensus 2 ~L~~L~l~~N~i~-~l~~~l~~l~~L~~L~l~~N~i~ 37 (44)
T PF12799_consen 2 NLEELDLSNNQIT-DLPPELSNLPNLETLNLSNNPIS 37 (44)
T ss_dssp T-SEEEETSSS-S-SHGGHGTTCTTSSEEEETSSCCS
T ss_pred cceEEEccCCCCc-ccCchHhCCCCCCEEEecCCCCC
Confidence 4555666666665 45555556666666666666555
|
... |
| >PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B | Back alignment and domain information |
|---|
Probab=98.15 E-value=2.5e-06 Score=56.21 Aligned_cols=37 Identities=35% Similarity=0.465 Sum_probs=28.6
Q ss_pred CCCCEEECCCCcCccccchhccCCCCCCEEEccCCCCc
Q 037325 546 SFLYILDMSNNSLSGSTPESIGSLRTVKFLVLRNNYLS 583 (598)
Q Consensus 546 ~~L~~L~ls~N~l~~~~p~~l~~l~~L~~L~l~~n~l~ 583 (598)
++|++|++++|+|+ .+|..++++++|+.|++++|+++
T Consensus 1 ~~L~~L~l~~N~i~-~l~~~l~~l~~L~~L~l~~N~i~ 37 (44)
T PF12799_consen 1 KNLEELDLSNNQIT-DLPPELSNLPNLETLNLSNNPIS 37 (44)
T ss_dssp TT-SEEEETSSS-S-SHGGHGTTCTTSSEEEETSSCCS
T ss_pred CcceEEEccCCCCc-ccCchHhCCCCCCEEEecCCCCC
Confidence 46888888888888 57777888888888888888887
|
... |
| >KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.96 E-value=2.8e-06 Score=91.53 Aligned_cols=157 Identities=21% Similarity=0.300 Sum_probs=99.9
Q ss_pred CCccEEECcCCCcCccccchhhc-CCCCCCEEecccccCCccc-chhhhCCCCCCCCCCccEEEccCccccccCccccCC
Q 037325 288 NSLQELDLSGNSFLGGQLSRNLG-KLCNLRTMILSRNNISSEV-SDFLDGLSECTNSILLEKLELRFNQFTGILPISLGS 365 (598)
Q Consensus 288 ~~L~~L~l~~n~~~~~~~~~~l~-~l~~L~~L~l~~n~l~~~~-~~~~~~l~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~ 365 (598)
.+|++|++++...+...-+..++ .+|+|+.|.+.+-.+...- ......++ +|..||+|+++++.. ..++.
T Consensus 122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFp------NL~sLDIS~TnI~nl--~GIS~ 193 (699)
T KOG3665|consen 122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFP------NLRSLDISGTNISNL--SGISR 193 (699)
T ss_pred HhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccC------ccceeecCCCCccCc--HHHhc
Confidence 46888888886644433343343 5688888888776554322 12223333 788888888887743 56778
Q ss_pred CCCCCEEEccCCcCCc-cchhhccCCCCCCEEeCcCCcCCccc--CCCchhhhcCCCCCCEEEccCccCccccchHHHhc
Q 037325 366 LKNLRHLVLWQNSFLG-SIPPSIGNLTLLKELYLASNQMNGQK--ISDSYQHLKNQTELRTLVLNKARISDTISDWFWQL 442 (598)
Q Consensus 366 l~~L~~L~ls~n~l~~-~~~~~l~~l~~L~~L~l~~n~l~~~~--~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~ 442 (598)
+++|+.|.+.+=.+.. ..-..+.++++|+.||+|........ +..-.+.-..+|+|+.||.++..+.+...+.+...
T Consensus 194 LknLq~L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~~~~le~ll~s 273 (699)
T KOG3665|consen 194 LKNLQVLSMRNLEFESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDINEEILEELLNS 273 (699)
T ss_pred cccHHHHhccCCCCCchhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcchhHHHHHHHHHh
Confidence 8888888887766653 22345778888888888876544322 01112344557888888888888877776666655
Q ss_pred CCCCCEEEcc
Q 037325 443 SLTLDELDVA 452 (598)
Q Consensus 443 ~~~L~~L~ls 452 (598)
-++|+.+-+-
T Consensus 274 H~~L~~i~~~ 283 (699)
T KOG3665|consen 274 HPNLQQIAAL 283 (699)
T ss_pred CccHhhhhhh
Confidence 5555555433
|
|
| >KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.93 E-value=1.4e-06 Score=71.05 Aligned_cols=88 Identities=25% Similarity=0.406 Sum_probs=75.2
Q ss_pred CCcEEEccCCcccccCCchhhcccCCCCCccccCCCCeEeCcCCccccccchhccCCCCCCEEECCCCcCccccchhccC
Q 037325 489 NVTKLYLRDNSFSGLIPNDIGQNLPFLTDLGNLKQLITLVISNNNLSGEIPLLFSNISFLYILDMSNNSLSGSTPESIGS 568 (598)
Q Consensus 489 ~L~~L~ls~n~l~~~~p~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~l~~ 568 (598)
.|+..+|++|.|. ..|..+.. ..+.++.|+|++|.++ .+|..+..++.|+.|+++.|.+. ..|.-+..
T Consensus 54 el~~i~ls~N~fk-~fp~kft~---------kf~t~t~lNl~~neis-dvPeE~Aam~aLr~lNl~~N~l~-~~p~vi~~ 121 (177)
T KOG4579|consen 54 ELTKISLSDNGFK-KFPKKFTI---------KFPTATTLNLANNEIS-DVPEELAAMPALRSLNLRFNPLN-AEPRVIAP 121 (177)
T ss_pred eEEEEecccchhh-hCCHHHhh---------ccchhhhhhcchhhhh-hchHHHhhhHHhhhcccccCccc-cchHHHHH
Confidence 5677888888887 67777665 2568999999999999 89999999999999999999998 67888888
Q ss_pred CCCCCEEEccCCCCcccCCcC
Q 037325 569 LRTVKFLVLRNNYLSGKLPLS 589 (598)
Q Consensus 569 l~~L~~L~l~~n~l~g~~P~~ 589 (598)
+.++-.|+..+|.+. +||..
T Consensus 122 L~~l~~Lds~~na~~-eid~d 141 (177)
T KOG4579|consen 122 LIKLDMLDSPENARA-EIDVD 141 (177)
T ss_pred HHhHHHhcCCCCccc-cCcHH
Confidence 999999999999887 66654
|
|
| >PRK15386 type III secretion protein GogB; Provisional | Back alignment and domain information |
|---|
Probab=97.80 E-value=8.8e-05 Score=73.82 Aligned_cols=75 Identities=15% Similarity=0.158 Sum_probs=43.1
Q ss_pred cCCCCCCCEEEccCCcCCccchhhccCCCCCCEEeCcCCcCCcccCCCchhhhcCCCCCCEEEccCcc-CccccchHHHh
Q 037325 363 LGSLKNLRHLVLWQNSFLGSIPPSIGNLTLLKELYLASNQMNGQKISDSYQHLKNQTELRTLVLNKAR-ISDTISDWFWQ 441 (598)
Q Consensus 363 l~~l~~L~~L~ls~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~~~~L~~L~l~~n~-l~~~~~~~~~~ 441 (598)
+..+++++.|++++|.++ .+|. -.++|++|.+++|.--... |.. + .++|+.|++++|. +. .+
T Consensus 48 ~~~~~~l~~L~Is~c~L~-sLP~---LP~sLtsL~Lsnc~nLtsL-P~~---L--P~nLe~L~Ls~Cs~L~-sL------ 110 (426)
T PRK15386 48 IEEARASGRLYIKDCDIE-SLPV---LPNELTEITIENCNNLTTL-PGS---I--PEGLEKLTVCHCPEIS-GL------ 110 (426)
T ss_pred HHHhcCCCEEEeCCCCCc-ccCC---CCCCCcEEEccCCCCcccC-Cch---h--hhhhhheEccCccccc-cc------
Confidence 344678888888888776 4451 2346888888775322222 321 1 2467777777763 32 12
Q ss_pred cCCCCCEEEccCCc
Q 037325 442 LSLTLDELDVAYNE 455 (598)
Q Consensus 442 ~~~~L~~L~ls~n~ 455 (598)
...|+.|+++.+.
T Consensus 111 -P~sLe~L~L~~n~ 123 (426)
T PRK15386 111 -PESVRSLEIKGSA 123 (426)
T ss_pred -ccccceEEeCCCC
Confidence 3356666665544
|
|
| >KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.77 E-value=1.4e-05 Score=86.21 Aligned_cols=128 Identities=20% Similarity=0.170 Sum_probs=55.4
Q ss_pred CCCCCEEECcCCCCC-cccchhccCCCCCCEEEccCCCCCCCccChhhhcCCCCCcEEEcCCCCCCCCcccchHhhhcCC
Q 037325 137 LKELRYLNLSGSFFS-GTIPQTLGNLSNLLYLDLNNFLDQSNQIDLEWLSGLSSLVYFNLGGADLSKAGAYWLEVFNKLH 215 (598)
Q Consensus 137 l~~L~~L~L~~n~l~-~~~p~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~l~ 215 (598)
+|.|+.|.+++-.+. +..-....++++|..||+++++.... ..++.+++|++|.+.+-.+..... ...+..++
T Consensus 147 LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl----~GIS~LknLq~L~mrnLe~e~~~~--l~~LF~L~ 220 (699)
T KOG3665|consen 147 LPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL----SGISRLKNLQVLSMRNLEFESYQD--LIDLFNLK 220 (699)
T ss_pred CcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc----HHHhccccHHHHhccCCCCCchhh--HHHHhccc
Confidence 444555544443332 11122223444455555544433222 224444455554444444433211 23444555
Q ss_pred CCCEEEcCCCCCCCCCC-----CCCcCCCCCccEEEccCCCCCCCcchhh-hcCCCCCEEE
Q 037325 216 SFVELHLPNCNLPSLPL-----SFPSLNFASLQVLDLSNNDFNSTTPHWL-FNITSLLCLD 270 (598)
Q Consensus 216 ~L~~L~l~~~~l~~~~~-----~~~~~~l~~L~~L~L~~n~l~~~~~~~l-~~l~~L~~L~ 270 (598)
+|+.||++......... ...-..+|+|+.||.++..+...+-+.+ ...++|+.+.
T Consensus 221 ~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~~~~le~ll~sH~~L~~i~ 281 (699)
T KOG3665|consen 221 KLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDINEEILEELLNSHPNLQQIA 281 (699)
T ss_pred CCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcchhHHHHHHHHHhCccHhhhh
Confidence 55555555543333220 0112235677777777666655443332 2334444443
|
|
| >KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=97.77 E-value=5.3e-05 Score=66.40 Aligned_cols=87 Identities=22% Similarity=0.229 Sum_probs=50.1
Q ss_pred hcCCCCCcEEEcCCCCCCCCcccchHhhhcCCCCCEEEcCCCCCCCCCCCCCcCCCCCccEEEccCCCCCCCcc---hhh
Q 037325 184 LSGLSSLVYFNLGGADLSKAGAYWLEVFNKLHSFVELHLPNCNLPSLPLSFPSLNFASLQVLDLSNNDFNSTTP---HWL 260 (598)
Q Consensus 184 ~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~---~~l 260 (598)
|..++.|..|.+++|+++.+. +..-..+++|+.|.+.+|.+..+.....+..+++|++|.+-+|.++..-- -.+
T Consensus 60 lp~l~rL~tLll~nNrIt~I~---p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~Ltll~Npv~~k~~YR~yvl 136 (233)
T KOG1644|consen 60 LPHLPRLHTLLLNNNRITRID---PDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEYLTLLGNPVEHKKNYRLYVL 136 (233)
T ss_pred CCCccccceEEecCCcceeec---cchhhhccccceEEecCcchhhhhhcchhccCCccceeeecCCchhcccCceeEEE
Confidence 555666777777777777665 23333456677777777776666554555666666666666665543211 123
Q ss_pred hcCCCCCEEEccC
Q 037325 261 FNITSLLCLDLGS 273 (598)
Q Consensus 261 ~~l~~L~~L~l~~ 273 (598)
..+|+|+.||+..
T Consensus 137 ~klp~l~~LDF~k 149 (233)
T KOG1644|consen 137 YKLPSLRTLDFQK 149 (233)
T ss_pred EecCcceEeehhh
Confidence 3445555554443
|
|
| >PRK15386 type III secretion protein GogB; Provisional | Back alignment and domain information |
|---|
Probab=97.70 E-value=0.00018 Score=71.59 Aligned_cols=75 Identities=15% Similarity=0.182 Sum_probs=38.1
Q ss_pred cCCCCCCEEecccccCCcccchhhhCCCCCCCCCCccEEEccCccccccCccccCCCCCCCEEEccCCcCCccchhhccC
Q 037325 310 GKLCNLRTMILSRNNISSEVSDFLDGLSECTNSILLEKLELRFNQFTGILPISLGSLKNLRHLVLWQNSFLGSIPPSIGN 389 (598)
Q Consensus 310 ~~l~~L~~L~l~~n~l~~~~~~~~~~l~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~ls~n~l~~~~~~~l~~ 389 (598)
..+.+++.|++++|.+... | .++. +|++|.+++|.-...+|..+ .++|+.|++++|.....+|.
T Consensus 49 ~~~~~l~~L~Is~c~L~sL-P----~LP~-----sLtsL~Lsnc~nLtsLP~~L--P~nLe~L~Ls~Cs~L~sLP~---- 112 (426)
T PRK15386 49 EEARASGRLYIKDCDIESL-P----VLPN-----ELTEITIENCNNLTTLPGSI--PEGLEKLTVCHCPEISGLPE---- 112 (426)
T ss_pred HHhcCCCEEEeCCCCCccc-C----CCCC-----CCcEEEccCCCCcccCCchh--hhhhhheEccCccccccccc----
Confidence 3456677777777655432 2 1221 57777776643333444433 24666666666632223332
Q ss_pred CCCCCEEeCcCCc
Q 037325 390 LTLLKELYLASNQ 402 (598)
Q Consensus 390 l~~L~~L~l~~n~ 402 (598)
.|+.|++..+.
T Consensus 113 --sLe~L~L~~n~ 123 (426)
T PRK15386 113 --SVRSLEIKGSA 123 (426)
T ss_pred --ccceEEeCCCC
Confidence 35555555443
|
|
| >KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only] | Back alignment and domain information |
|---|
Probab=97.59 E-value=3e-05 Score=70.96 Aligned_cols=118 Identities=22% Similarity=0.191 Sum_probs=69.6
Q ss_pred cCccccCCCCCCEEeCCCCCCCCCCcchhccCCCCCCEEECcCC--CCCcccchhccCCCCCCEEEccCCCCCCCccChh
Q 037325 105 ISPSLLQLKDLEYLDLSMNNFTGFQVPEFIGSLKELRYLNLSGS--FFSGTIPQTLGNLSNLLYLDLNNFLDQSNQIDLE 182 (598)
Q Consensus 105 ~~~~l~~l~~L~~L~Ls~n~l~~~~~p~~~~~l~~L~~L~L~~n--~l~~~~p~~l~~l~~L~~L~L~~n~~~~~~~~~~ 182 (598)
+......+..|+.|++.+..++.. ..+-.+++|++|.++.| ++++.++.....+++|++|++++|++.. .....
T Consensus 35 ~~gl~d~~~~le~ls~~n~gltt~---~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~-lstl~ 110 (260)
T KOG2739|consen 35 LGGLTDEFVELELLSVINVGLTTL---TNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKD-LSTLR 110 (260)
T ss_pred cccccccccchhhhhhhccceeec---ccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCcccc-ccccc
Confidence 334444556666666666665532 23345677777778777 5555566656666777777777776654 22233
Q ss_pred hhcCCCCCcEEEcCCCCCCCCcccchHhhhcCCCCCEEEcCCCC
Q 037325 183 WLSGLSSLVYFNLGGADLSKAGAYWLEVFNKLHSFVELHLPNCN 226 (598)
Q Consensus 183 ~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~l~~L~~L~l~~~~ 226 (598)
.+..+.+|..|++.+|..+.....-...|.-+++|++|+-.+..
T Consensus 111 pl~~l~nL~~Ldl~n~~~~~l~dyre~vf~ll~~L~~LD~~dv~ 154 (260)
T KOG2739|consen 111 PLKELENLKSLDLFNCSVTNLDDYREKVFLLLPSLKYLDGCDVD 154 (260)
T ss_pred hhhhhcchhhhhcccCCccccccHHHHHHHHhhhhccccccccC
Confidence 45566666677776666554433323455566666666555443
|
|
| >KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=97.46 E-value=0.00017 Score=63.32 Aligned_cols=87 Identities=25% Similarity=0.245 Sum_probs=52.5
Q ss_pred CCCCEEeCCCCCCCCCCcchhccCCCCCCEEECcCCCCCcccchhccCCCCCCEEEccCCCCCCCccChhhhcCCCCCcE
Q 037325 113 KDLEYLDLSMNNFTGFQVPEFIGSLKELRYLNLSGSFFSGTIPQTLGNLSNLLYLDLNNFLDQSNQIDLEWLSGLSSLVY 192 (598)
Q Consensus 113 ~~L~~L~Ls~n~l~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~~l~~L~~ 192 (598)
.....+||++|.+... ..+..++.|.+|.+.+|+|+..-|.--..+++|++|.+.+|.+... .+...+..+++|++
T Consensus 42 d~~d~iDLtdNdl~~l---~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l-~dl~pLa~~p~L~~ 117 (233)
T KOG1644|consen 42 DQFDAIDLTDNDLRKL---DNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQEL-GDLDPLASCPKLEY 117 (233)
T ss_pred cccceecccccchhhc---ccCCCccccceEEecCCcceeeccchhhhccccceEEecCcchhhh-hhcchhccCCccce
Confidence 4556778888877632 3456778888888888888855454444566777777777654221 11222445555555
Q ss_pred EEcCCCCCCCC
Q 037325 193 FNLGGADLSKA 203 (598)
Q Consensus 193 L~l~~n~~~~~ 203 (598)
|.+-+|++...
T Consensus 118 Ltll~Npv~~k 128 (233)
T KOG1644|consen 118 LTLLGNPVEHK 128 (233)
T ss_pred eeecCCchhcc
Confidence 55555554433
|
|
| >KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.13 E-value=8.8e-05 Score=78.71 Aligned_cols=14 Identities=36% Similarity=0.297 Sum_probs=6.6
Q ss_pred cCCCCCEEEccCCc
Q 037325 262 NITSLLCLDLGSND 275 (598)
Q Consensus 262 ~l~~L~~L~l~~n~ 275 (598)
.++.|+.|+++.+.
T Consensus 293 ~~~~L~~L~l~~c~ 306 (482)
T KOG1947|consen 293 RCPSLRELDLSGCH 306 (482)
T ss_pred hcCcccEEeeecCc
Confidence 34445555555443
|
|
| >KOG4308 consensus LRR-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.80 E-value=8.9e-06 Score=83.96 Aligned_cols=233 Identities=21% Similarity=0.169 Sum_probs=109.7
Q ss_pred CccEEEccCcccccc----CccccCCCCC-CCEEEccCCcCCcc----chhhccCC-CCCCEEeCcCCcCCcccCCCchh
Q 037325 344 LLEKLELRFNQFTGI----LPISLGSLKN-LRHLVLWQNSFLGS----IPPSIGNL-TLLKELYLASNQMNGQKISDSYQ 413 (598)
Q Consensus 344 ~L~~L~Ls~n~l~~~----~~~~l~~l~~-L~~L~ls~n~l~~~----~~~~l~~l-~~L~~L~l~~n~l~~~~~~~~~~ 413 (598)
++++|++++|.++.. +...+...+. +..+++..|++.+. ....+..+ +.++.++++.|.++.........
T Consensus 205 ~le~L~L~~~~~t~~~c~~l~~~l~~~~~~~~el~l~~n~l~d~g~~~L~~~l~~~~~~l~~l~l~~nsi~~~~~~~L~~ 284 (478)
T KOG4308|consen 205 SLETLKLSRCGVTSSSCALLDEVLASGESLLRELDLASNKLGDVGVEKLLPCLSVLSETLRVLDLSRNSITEKGVRDLAE 284 (478)
T ss_pred cHHHHhhhhcCcChHHHHHHHHHHhccchhhHHHHHHhcCcchHHHHHHHHHhcccchhhhhhhhhcCCccccchHHHHH
Confidence 566666666655422 1122333344 55577777766533 22234444 56677777777776555333345
Q ss_pred hhcCCCCCCEEEccCccCccccchHHHhc---CCCCCEEEccCCcCcccCCCCccc-----C-CCCEEEcccCcCccc--
Q 037325 414 HLKNQTELRTLVLNKARISDTISDWFWQL---SLTLDELDVAYNELRGRVPNSLGF-----N-FPAKVDLSFNNFEGR-- 482 (598)
Q Consensus 414 ~l~~~~~L~~L~l~~n~l~~~~~~~~~~~---~~~L~~L~ls~n~~~~~~p~~~~~-----~-~L~~l~ls~n~l~~~-- 482 (598)
.+..++.++.+.+++|.+.+......... ...+.++-+.++......+..... . .......+++...+.
T Consensus 285 ~l~~~~~l~~l~l~~n~l~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 364 (478)
T KOG4308|consen 285 VLVSCRQLEELSLSNNPLTDYGVELLLEALERKTPLLHLVLGGTGKGTRGGTSVLAEADAQRQLLSELGISGNRVGEEGL 364 (478)
T ss_pred HHhhhHHHHHhhcccCccccHHHHHHHHHhhhcccchhhhccccCccchhHHHHHHHHHHHhhhhHHHHhhhccchHHHH
Confidence 55666677777777777665444332221 122333333332221111111100 0 112222333332211
Q ss_pred ------CCCCCcCCcEEEccCCcccccCCchhhcccCCCCCccccCCCCeEeCcCCccccccchhc-----cCCCCCCEE
Q 037325 483 ------LLLWSFNVTKLYLRDNSFSGLIPNDIGQNLPFLTDLGNLKQLITLVISNNNLSGEIPLLF-----SNISFLYIL 551 (598)
Q Consensus 483 ------~~~~~~~L~~L~ls~n~l~~~~p~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~-----~~l~~L~~L 551 (598)
....-+.+..+++..+.+.+..-..+.. .+.....+.+++++.|.....-+..+ .+. .++.+
T Consensus 365 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~------~~~~~~~l~~~~l~~n~~~~~~~~~l~~~~~~~~-~~~~~ 437 (478)
T KOG4308|consen 365 ALLVLAKSNPKSELLRLSLNSQVIEGRGALRLAA------QLASNEKLEILDLSLNSLHDEGAEVLTEQLSRNG-SLKAL 437 (478)
T ss_pred HHHhhhhcccCcccchhhhhccccccHHHHHhhh------hhhhcchhhhhhhhcCccchhhHHHHHHhhhhcc-cchhh
Confidence 1111223556666666554432222211 12335677777777776654433222 234 77777
Q ss_pred ECCCCcCccccchhcc----CCCCCCEEEccCCCCc
Q 037325 552 DMSNNSLSGSTPESIG----SLRTVKFLVLRNNYLS 583 (598)
Q Consensus 552 ~ls~N~l~~~~p~~l~----~l~~L~~L~l~~n~l~ 583 (598)
+++.|.++..-..... .=+......+..|.+.
T Consensus 438 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 473 (478)
T KOG4308|consen 438 RLSRNPITALGTEELQRALALNPGILAIRLRGNVIG 473 (478)
T ss_pred hhccChhhhcchHHHHHHHhcCCCcceeecccCccc
Confidence 8888876644333332 2244455555555544
|
|
| >PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A | Back alignment and domain information |
|---|
Probab=96.79 E-value=0.0039 Score=52.57 Aligned_cols=83 Identities=24% Similarity=0.336 Sum_probs=31.4
Q ss_pred hhhcCCCCCEEEcCCCCCCCCCCCCCcCCCCCccEEEccCCCCCCCcchhhhcCCCCCEEEccCCcccccCCccccCCCC
Q 037325 210 VFNKLHSFVELHLPNCNLPSLPLSFPSLNFASLQVLDLSNNDFNSTTPHWLFNITSLLCLDLGSNDLQGDIPDGFASLNS 289 (598)
Q Consensus 210 ~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~ 289 (598)
.|..+++|+.+.+.++ +..+.. ..+..+++++.+.+.. .+.......+..+++|+.+.+..+ +.......+.++ +
T Consensus 30 ~F~~~~~l~~i~~~~~-~~~i~~-~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~~l~~i~~~~~-~~~i~~~~f~~~-~ 104 (129)
T PF13306_consen 30 AFSNCTSLKSINFPNN-LTSIGD-NAFSNCKSLESITFPN-NLKSIGDNAFSNCTNLKNIDIPSN-ITEIGSSSFSNC-N 104 (129)
T ss_dssp TTTT-TT-SEEEESST-TSCE-T-TTTTT-TT-EEEEETS-TT-EE-TTTTTT-TTECEEEETTT--BEEHTTTTTT--T
T ss_pred hccccccccccccccc-ccccce-eeeecccccccccccc-cccccccccccccccccccccCcc-ccEEchhhhcCC-C
Confidence 4444545555555442 333333 3444454555555543 222222333444555555555443 222222334444 5
Q ss_pred ccEEECcC
Q 037325 290 LQELDLSG 297 (598)
Q Consensus 290 L~~L~l~~ 297 (598)
|+.+.+..
T Consensus 105 l~~i~~~~ 112 (129)
T PF13306_consen 105 LKEINIPS 112 (129)
T ss_dssp --EEE-TT
T ss_pred ceEEEECC
Confidence 55555544
|
|
| >KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only] | Back alignment and domain information |
|---|
Probab=96.74 E-value=0.00089 Score=61.52 Aligned_cols=36 Identities=19% Similarity=0.282 Sum_probs=16.8
Q ss_pred cCCCCCCEEECcCCCCCcccchhccCCCCCCEEEccCC
Q 037325 135 GSLKELRYLNLSGSFFSGTIPQTLGNLSNLLYLDLNNF 172 (598)
Q Consensus 135 ~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n 172 (598)
..+..|+.|++.+..++. + ..+-.+++|++|.++.|
T Consensus 40 d~~~~le~ls~~n~gltt-~-~~~P~Lp~LkkL~lsdn 75 (260)
T KOG2739|consen 40 DEFVELELLSVINVGLTT-L-TNFPKLPKLKKLELSDN 75 (260)
T ss_pred ccccchhhhhhhccceee-c-ccCCCcchhhhhcccCC
Confidence 344556666655555441 1 12334445555555444
|
|
| >PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A | Back alignment and domain information |
|---|
Probab=96.62 E-value=0.0058 Score=51.55 Aligned_cols=76 Identities=21% Similarity=0.289 Sum_probs=27.3
Q ss_pred hhhcCCCCCEEEcCCCCCCCCCCCCCcCCCCCccEEEccCCCCCCCcchhhhcCCCCCEEEccCCcccccCCccccCCCC
Q 037325 210 VFNKLHSFVELHLPNCNLPSLPLSFPSLNFASLQVLDLSNNDFNSTTPHWLFNITSLLCLDLGSNDLQGDIPDGFASLNS 289 (598)
Q Consensus 210 ~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~ 289 (598)
.|..+++++.+.+.+ .+..+.. ..+..+++|+.+++..+ +.......+.++ +|+.+.+.. .+.......|.++++
T Consensus 53 ~F~~~~~l~~i~~~~-~~~~i~~-~~F~~~~~l~~i~~~~~-~~~i~~~~f~~~-~l~~i~~~~-~~~~i~~~~F~~~~~ 127 (129)
T PF13306_consen 53 AFSNCKSLESITFPN-NLKSIGD-NAFSNCTNLKNIDIPSN-ITEIGSSSFSNC-NLKEINIPS-NITKIEENAFKNCTK 127 (129)
T ss_dssp TTTT-TT-EEEEETS-TT-EE-T-TTTTT-TTECEEEETTT--BEEHTTTTTT--T--EEE-TT-B-SS----GGG----
T ss_pred eeecccccccccccc-ccccccc-ccccccccccccccCcc-ccEEchhhhcCC-CceEEEECC-CccEECCcccccccc
Confidence 344444555555543 3333332 34445666666666544 333333445555 666666654 222223334555544
Q ss_pred c
Q 037325 290 L 290 (598)
Q Consensus 290 L 290 (598)
|
T Consensus 128 l 128 (129)
T PF13306_consen 128 L 128 (129)
T ss_dssp -
T ss_pred C
Confidence 4
|
|
| >KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.62 E-value=0.00087 Score=71.07 Aligned_cols=117 Identities=21% Similarity=0.148 Sum_probs=71.8
Q ss_pred cCCCCCCEEeCCCCC-CCCCCcchhccCCCCCCEEECcCC-CCCccc----chhccCCCCCCEEEccCCCCCCCccChhh
Q 037325 110 LQLKDLEYLDLSMNN-FTGFQVPEFIGSLKELRYLNLSGS-FFSGTI----PQTLGNLSNLLYLDLNNFLDQSNQIDLEW 183 (598)
Q Consensus 110 ~~l~~L~~L~Ls~n~-l~~~~~p~~~~~l~~L~~L~L~~n-~l~~~~----p~~l~~l~~L~~L~L~~n~~~~~~~~~~~ 183 (598)
..++.|+.|.+..+. +....+-.....+++|+.|+++++ ...... ......+++|+.|+++++...........
T Consensus 185 ~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l 264 (482)
T KOG1947|consen 185 SSCPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSAL 264 (482)
T ss_pred hhCchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHH
Confidence 347888888888763 332213344566788888888873 221111 12334568888888888764222222222
Q ss_pred hcCCCCCcEEEcCCCC-CCCCcccchHhhhcCCCCCEEEcCCCCCC
Q 037325 184 LSGLSSLVYFNLGGAD-LSKAGAYWLEVFNKLHSFVELHLPNCNLP 228 (598)
Q Consensus 184 ~~~l~~L~~L~l~~n~-~~~~~~~~~~~~~~l~~L~~L~l~~~~l~ 228 (598)
...+++|++|.+.++. +++.. +......++.|++|++++|...
T Consensus 265 ~~~c~~L~~L~l~~c~~lt~~g--l~~i~~~~~~L~~L~l~~c~~~ 308 (482)
T KOG1947|consen 265 ASRCPNLETLSLSNCSNLTDEG--LVSIAERCPSLRELDLSGCHGL 308 (482)
T ss_pred HhhCCCcceEccCCCCccchhH--HHHHHHhcCcccEEeeecCccc
Confidence 3347888888877776 45443 2445567888899988888543
|
|
| >KOG2123 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.52 E-value=0.00014 Score=66.92 Aligned_cols=79 Identities=27% Similarity=0.286 Sum_probs=32.1
Q ss_pred CCcEEEcCCCCCCCCcccchHhhhcCCCCCEEEcCCCCCCCCCCCCCcCCCCCccEEEccCCCCCCCcc-hhhhcCCCCC
Q 037325 189 SLVYFNLGGADLSKAGAYWLEVFNKLHSFVELHLPNCNLPSLPLSFPSLNFASLQVLDLSNNDFNSTTP-HWLFNITSLL 267 (598)
Q Consensus 189 ~L~~L~l~~n~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~-~~l~~l~~L~ 267 (598)
+.+.|++.++.++++ ....+++.|+.|.|+-|.++.+. .+..|++|++|.|..|.|..... ..+.++++|+
T Consensus 20 ~vkKLNcwg~~L~DI-----sic~kMp~lEVLsLSvNkIssL~---pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr 91 (388)
T KOG2123|consen 20 NVKKLNCWGCGLDDI-----SICEKMPLLEVLSLSVNKISSLA---PLQRCTRLKELYLRKNCIESLDELEYLKNLPSLR 91 (388)
T ss_pred HhhhhcccCCCccHH-----HHHHhcccceeEEeeccccccch---hHHHHHHHHHHHHHhcccccHHHHHHHhcCchhh
Confidence 334444444444433 23344444444444444444432 23344444444444444432111 1233444444
Q ss_pred EEEccCCc
Q 037325 268 CLDLGSND 275 (598)
Q Consensus 268 ~L~l~~n~ 275 (598)
.|+|..|.
T Consensus 92 ~LWL~ENP 99 (388)
T KOG2123|consen 92 TLWLDENP 99 (388)
T ss_pred hHhhccCC
Confidence 44444443
|
|
| >PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape [] | Back alignment and domain information |
|---|
Probab=96.35 E-value=0.0012 Score=36.06 Aligned_cols=19 Identities=47% Similarity=0.665 Sum_probs=9.2
Q ss_pred CCEEECCCCcCccccchhcc
Q 037325 548 LYILDMSNNSLSGSTPESIG 567 (598)
Q Consensus 548 L~~L~ls~N~l~~~~p~~l~ 567 (598)
|++||+++|+++ .+|.+|+
T Consensus 2 L~~Ldls~n~l~-~ip~~~~ 20 (22)
T PF00560_consen 2 LEYLDLSGNNLT-SIPSSFS 20 (22)
T ss_dssp ESEEEETSSEES-EEGTTTT
T ss_pred ccEEECCCCcCE-eCChhhc
Confidence 445555555555 4444433
|
LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A .... |
| >KOG4308 consensus LRR-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.31 E-value=2.2e-05 Score=81.09 Aligned_cols=308 Identities=24% Similarity=0.224 Sum_probs=159.7
Q ss_pred CCEEEccCCcccccCCc----cccCCCCccEEECcCCCcCccccchh----hcCC-CCCCEEecccccCCcccchhhhCC
Q 037325 266 LLCLDLGSNDLQGDIPD----GFASLNSLQELDLSGNSFLGGQLSRN----LGKL-CNLRTMILSRNNISSEVSDFLDGL 336 (598)
Q Consensus 266 L~~L~l~~n~l~~~~~~----~l~~l~~L~~L~l~~n~~~~~~~~~~----l~~l-~~L~~L~l~~n~l~~~~~~~~~~l 336 (598)
+..+.+.+|.+...... .+...+.|+.|++++|.+ ++.-... +... +.++.|++..|.++......+...
T Consensus 89 l~~L~L~~~~l~~~~~~~l~~~l~t~~~L~~L~l~~n~l-~~~g~~~l~~~l~~~~~~l~~L~l~~c~l~~~g~~~l~~~ 167 (478)
T KOG4308|consen 89 LLHLSLANNRLGDRGAEELAQALKTLPTLGQLDLSGNNL-GDEGARLLCEGLRLPQCLLQTLELVSCSLTSEGAAPLAAV 167 (478)
T ss_pred HHHhhhhhCccccchHHHHHHHhcccccHhHhhcccCCC-ccHhHHHHHhhcccchHHHHHHHhhcccccccchHHHHHH
Confidence 67778888877654332 345567788888888873 3222111 1121 346667777777766554332211
Q ss_pred CCCCCCCCccEEEccCcccccc----CccccC----CCCCCCEEEccCCcCCccch----hhccCCCC-CCEEeCcCCcC
Q 037325 337 SECTNSILLEKLELRFNQFTGI----LPISLG----SLKNLRHLVLWQNSFLGSIP----PSIGNLTL-LKELYLASNQM 403 (598)
Q Consensus 337 ~~~~~~~~L~~L~Ls~n~l~~~----~~~~l~----~l~~L~~L~ls~n~l~~~~~----~~l~~l~~-L~~L~l~~n~l 403 (598)
-. ....++.++++.|.+... ++..+. ...+++.|.+.+|.++.... ..+...+. +..+++.+|.+
T Consensus 168 L~--~~~~l~~l~l~~n~l~~~g~~~l~~~l~~~~~~~~~le~L~L~~~~~t~~~c~~l~~~l~~~~~~~~el~l~~n~l 245 (478)
T KOG4308|consen 168 LE--KNEHLTELDLSLNGLIELGLLVLSQALESAASPLSSLETLKLSRCGVTSSSCALLDEVLASGESLLRELDLASNKL 245 (478)
T ss_pred Hh--cccchhHHHHHhcccchhhhHHHhhhhhhhhcccccHHHHhhhhcCcChHHHHHHHHHHhccchhhHHHHHHhcCc
Confidence 10 012677777777765311 222222 35567777777776653221 22344444 55677777776
Q ss_pred CcccCCCchhhhcCC-CCCCEEEccCccCccccchHHHh---cCCCCCEEEccCCcCcccCCCCcc-----cCCCCEEEc
Q 037325 404 NGQKISDSYQHLKNQ-TELRTLVLNKARISDTISDWFWQ---LSLTLDELDVAYNELRGRVPNSLG-----FNFPAKVDL 474 (598)
Q Consensus 404 ~~~~~~~~~~~l~~~-~~L~~L~l~~n~l~~~~~~~~~~---~~~~L~~L~ls~n~~~~~~p~~~~-----~~~L~~l~l 474 (598)
.+..+......+... ..++++++..|.+++........ .++.++++.+++|.+......... ...+..+.+
T Consensus 246 ~d~g~~~L~~~l~~~~~~l~~l~l~~nsi~~~~~~~L~~~l~~~~~l~~l~l~~n~l~~~~~~~~~~~l~~~~~~~~~~l 325 (478)
T KOG4308|consen 246 GDVGVEKLLPCLSVLSETLRVLDLSRNSITEKGVRDLAEVLVSCRQLEELSLSNNPLTDYGVELLLEALERKTPLLHLVL 325 (478)
T ss_pred chHHHHHHHHHhcccchhhhhhhhhcCCccccchHHHHHHHhhhHHHHHhhcccCccccHHHHHHHHHhhhcccchhhhc
Confidence 544222222334444 56677777777776655443322 244667777777766532111110 002222222
Q ss_pred ccCcCcccCCCC--------CcCCcEEEccCCcccccCCchhhcccCCCCCcc-ccCCCCeEeCcCCccccc----cchh
Q 037325 475 SFNNFEGRLLLW--------SFNVTKLYLRDNSFSGLIPNDIGQNLPFLTDLG-NLKQLITLVISNNNLSGE----IPLL 541 (598)
Q Consensus 475 s~n~l~~~~~~~--------~~~L~~L~ls~n~l~~~~p~~~~~~~~~~~~~~-~l~~L~~L~Ls~N~l~~~----~p~~ 541 (598)
.++.....-+.. -..+.....++++..+..-..+.. ... .-..+..+++..+.+.+. ++..
T Consensus 326 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~ 399 (478)
T KOG4308|consen 326 GGTGKGTRGGTSVLAEADAQRQLLSELGISGNRVGEEGLALLVL------AKSNPKSELLRLSLNSQVIEGRGALRLAAQ 399 (478)
T ss_pred cccCccchhHHHHHHHHHHHhhhhHHHHhhhccchHHHHHHHhh------hhcccCcccchhhhhccccccHHHHHhhhh
Confidence 222211100000 012223334444433222111111 111 123366677777766654 5666
Q ss_pred ccCCCCCCEEECCCCcCccccchhc-----cCCCCCCEEEccCCCCc
Q 037325 542 FSNISFLYILDMSNNSLSGSTPESI-----GSLRTVKFLVLRNNYLS 583 (598)
Q Consensus 542 ~~~l~~L~~L~ls~N~l~~~~p~~l-----~~l~~L~~L~l~~n~l~ 583 (598)
+.....+++++++.|......+..+ .+. .++.++++.|+++
T Consensus 400 ~~~~~~l~~~~l~~n~~~~~~~~~l~~~~~~~~-~~~~~~l~~~~~~ 445 (478)
T KOG4308|consen 400 LASNEKLEILDLSLNSLHDEGAEVLTEQLSRNG-SLKALRLSRNPIT 445 (478)
T ss_pred hhhcchhhhhhhhcCccchhhHHHHHHhhhhcc-cchhhhhccChhh
Confidence 7788999999999997665555443 344 8899999999876
|
|
| >KOG2123 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.29 E-value=0.00015 Score=66.67 Aligned_cols=82 Identities=22% Similarity=0.139 Sum_probs=47.7
Q ss_pred hcCCCCCcEEEcCCCCCCCCcccchHhhhcCCCCCEEEcCCCCCCCCCCCCCcCCCCCccEEEccCCCCCCCcch-----
Q 037325 184 LSGLSSLVYFNLGGADLSKAGAYWLEVFNKLHSFVELHLPNCNLPSLPLSFPSLNFASLQVLDLSNNDFNSTTPH----- 258 (598)
Q Consensus 184 ~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~----- 258 (598)
+.+++.|++|.|+-|.++.. +.+..|++|++|.|..|.|.++....-+.++++|+.|.|..|.-.+..+.
T Consensus 37 c~kMp~lEVLsLSvNkIssL-----~pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~LWL~ENPCc~~ag~nYR~~ 111 (388)
T KOG2123|consen 37 CEKMPLLEVLSLSVNKISSL-----APLQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTLWLDENPCCGEAGQNYRRK 111 (388)
T ss_pred HHhcccceeEEeeccccccc-----hhHHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhHhhccCCcccccchhHHHH
Confidence 44555555555555555543 34555666666666666665554445555667777777777655544332
Q ss_pred hhhcCCCCCEEE
Q 037325 259 WLFNITSLLCLD 270 (598)
Q Consensus 259 ~l~~l~~L~~L~ 270 (598)
.+.-+|+|++||
T Consensus 112 VLR~LPnLkKLD 123 (388)
T KOG2123|consen 112 VLRVLPNLKKLD 123 (388)
T ss_pred HHHHcccchhcc
Confidence 345567777775
|
|
| >PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape [] | Back alignment and domain information |
|---|
Probab=96.17 E-value=0.0021 Score=35.04 Aligned_cols=20 Identities=35% Similarity=0.630 Sum_probs=9.5
Q ss_pred CCEEEccCCCCcccCCcCccC
Q 037325 572 VKFLVLRNNYLSGKLPLSLKN 592 (598)
Q Consensus 572 L~~L~l~~n~l~g~~P~~~~~ 592 (598)
|++||+++|+++ .||+.|++
T Consensus 2 L~~Ldls~n~l~-~ip~~~~~ 21 (22)
T PF00560_consen 2 LEYLDLSGNNLT-SIPSSFSN 21 (22)
T ss_dssp ESEEEETSSEES-EEGTTTTT
T ss_pred ccEEECCCCcCE-eCChhhcC
Confidence 444555555544 44444443
|
LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A .... |
| >PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D | Back alignment and domain information |
|---|
Probab=93.97 E-value=0.036 Score=27.94 Aligned_cols=11 Identities=64% Similarity=0.809 Sum_probs=3.6
Q ss_pred CCEEECCCCcC
Q 037325 548 LYILDMSNNSL 558 (598)
Q Consensus 548 L~~L~ls~N~l 558 (598)
|++|+|++|++
T Consensus 3 L~~L~l~~n~L 13 (17)
T PF13504_consen 3 LRTLDLSNNRL 13 (17)
T ss_dssp -SEEEETSS--
T ss_pred cCEEECCCCCC
Confidence 44444444443
|
... |
| >KOG3864 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=93.09 E-value=0.019 Score=50.83 Aligned_cols=82 Identities=17% Similarity=0.184 Sum_probs=53.4
Q ss_pred CccEEEccCccccccCccccCCCCCCCEEEccCCcCCcc-chhhcc-CCCCCCEEeCcCC-cCCcccCCCchhhhcCCCC
Q 037325 344 LLEKLELRFNQFTGILPISLGSLKNLRHLVLWQNSFLGS-IPPSIG-NLTLLKELYLASN-QMNGQKISDSYQHLKNQTE 420 (598)
Q Consensus 344 ~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~ls~n~l~~~-~~~~l~-~l~~L~~L~l~~n-~l~~~~~~~~~~~l~~~~~ 420 (598)
.++.+|-++..+..+.-..+..++.++.|.+.+|.-.+. --+.++ -.++|+.|++++| +|| ...+.++..+++
T Consensus 102 ~IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT----~~GL~~L~~lkn 177 (221)
T KOG3864|consen 102 KIEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRIT----DGGLACLLKLKN 177 (221)
T ss_pred eEEEEecCCchHHHHHHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeec----hhHHHHHHHhhh
Confidence 477888888877777667777778888888887754322 222232 2367788888877 455 334556677777
Q ss_pred CCEEEccCc
Q 037325 421 LRTLVLNKA 429 (598)
Q Consensus 421 L~~L~l~~n 429 (598)
|+.|.+.+-
T Consensus 178 Lr~L~l~~l 186 (221)
T KOG3864|consen 178 LRRLHLYDL 186 (221)
T ss_pred hHHHHhcCc
Confidence 777766653
|
|
| >PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D | Back alignment and domain information |
|---|
Probab=93.07 E-value=0.057 Score=27.19 Aligned_cols=17 Identities=41% Similarity=0.585 Sum_probs=11.1
Q ss_pred CCCCEEEccCCCCcccCC
Q 037325 570 RTVKFLVLRNNYLSGKLP 587 (598)
Q Consensus 570 ~~L~~L~l~~n~l~g~~P 587 (598)
++|+.|++++|+++ .+|
T Consensus 1 ~~L~~L~l~~n~L~-~lP 17 (17)
T PF13504_consen 1 PNLRTLDLSNNRLT-SLP 17 (17)
T ss_dssp TT-SEEEETSS--S-SE-
T ss_pred CccCEEECCCCCCC-CCc
Confidence 47999999999987 565
|
... |
| >KOG3864 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=92.40 E-value=0.021 Score=50.59 Aligned_cols=67 Identities=30% Similarity=0.258 Sum_probs=38.5
Q ss_pred hHhhhcCCCCCEEEcCCCCC-CCCCCCCCcCCCCCccEEEccCC-CCCCCcchhhhcCCCCCEEEccCC
Q 037325 208 LEVFNKLHSFVELHLPNCNL-PSLPLSFPSLNFASLQVLDLSNN-DFNSTTPHWLFNITSLLCLDLGSN 274 (598)
Q Consensus 208 ~~~~~~l~~L~~L~l~~~~l-~~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~l~~l~~L~~L~l~~n 274 (598)
.+.+..++.++.|.+.+|.- .+......-.-.++|+.|++++| +|+.....++.++++|+.|.+.+-
T Consensus 118 le~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~L~l~~l 186 (221)
T KOG3864|consen 118 LEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNLRRLHLYDL 186 (221)
T ss_pred HHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHHhhhhHHHHhcCc
Confidence 34445555555555555522 11111011112368888888877 677777777778888888777653
|
|
| >KOG0473 consensus Leucine-rich repeat protein [Function unknown] | Back alignment and domain information |
|---|
Probab=92.10 E-value=0.0036 Score=56.37 Aligned_cols=87 Identities=21% Similarity=0.106 Sum_probs=59.7
Q ss_pred cCCcEEEccCCcccccCCchhhcccCCCCCccccCCCCeEeCcCCccccccchhccCCCCCCEEECCCCcCccccchhcc
Q 037325 488 FNVTKLYLRDNSFSGLIPNDIGQNLPFLTDLGNLKQLITLVISNNNLSGEIPLLFSNISFLYILDMSNNSLSGSTPESIG 567 (598)
Q Consensus 488 ~~L~~L~ls~n~l~~~~p~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~l~ 567 (598)
...+.||++.|++. ..-..+ +.++.+..||++.|.+. ..|..++....+..+++..|..+ ..|.+++
T Consensus 42 kr~tvld~~s~r~v-n~~~n~----------s~~t~~~rl~~sknq~~-~~~~d~~q~~e~~~~~~~~n~~~-~~p~s~~ 108 (326)
T KOG0473|consen 42 KRVTVLDLSSNRLV-NLGKNF----------SILTRLVRLDLSKNQIK-FLPKDAKQQRETVNAASHKNNHS-QQPKSQK 108 (326)
T ss_pred ceeeeehhhhhHHH-hhccch----------HHHHHHHHHhccHhhHh-hChhhHHHHHHHHHHHhhccchh-hCCcccc
Confidence 45566677777654 222222 22667777888888777 67777777777777888777777 6777888
Q ss_pred CCCCCCEEEccCCCCcccCC
Q 037325 568 SLRTVKFLVLRNNYLSGKLP 587 (598)
Q Consensus 568 ~l~~L~~L~l~~n~l~g~~P 587 (598)
..+.++++++.+|++...+-
T Consensus 109 k~~~~k~~e~k~~~~~~~~~ 128 (326)
T KOG0473|consen 109 KEPHPKKNEQKKTEFFRKLF 128 (326)
T ss_pred ccCCcchhhhccCcchHHHH
Confidence 88888888888887664433
|
|
| >KOG4242 consensus Predicted myosin-I-binding protein [Cell motility] | Back alignment and domain information |
|---|
Probab=91.21 E-value=1.2 Score=44.91 Aligned_cols=114 Identities=18% Similarity=0.044 Sum_probs=58.5
Q ss_pred CCCCCEEECcCCCCCcccchhccCCCCCCEEEccCCCCCCCccChh-hhcCCCCCcEEEcCCCCCCCCcccchHhhhcCC
Q 037325 137 LKELRYLNLSGSFFSGTIPQTLGNLSNLLYLDLNNFLDQSNQIDLE-WLSGLSSLVYFNLGGADLSKAGAYWLEVFNKLH 215 (598)
Q Consensus 137 l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~~~~~~~~~~-~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~l~ 215 (598)
-+.+++++++.|.+....|..+..-..= +.++.|.......... .-..-..+.+++++.|...+.++........-.
T Consensus 164 npr~r~~dls~npi~dkvpihl~~p~~p--l~lr~c~lsskfis~l~~qsg~~~lteldls~n~~Kddip~~~n~~a~~~ 241 (553)
T KOG4242|consen 164 NPRARQHDLSPNPIGDKVPIHLPQPGNP--LSLRVCELSSKFISKLLIQSGRLWLTELDLSTNGGKDDIPRTLNKKAGTL 241 (553)
T ss_pred cchhhhhccCCCcccccCCccccCCCCc--cchhhhhhhhhHHHHhhhhhccccccccccccCCCCccchhHHHHhhhhh
Confidence 4567788888887776666555321110 4444443322211111 112223567788888877766543333333344
Q ss_pred CCCEEEcCCCCCCC--CCCCCCcCCCCCccEEEccCCCC
Q 037325 216 SFVELHLPNCNLPS--LPLSFPSLNFASLQVLDLSNNDF 252 (598)
Q Consensus 216 ~L~~L~l~~~~l~~--~~~~~~~~~l~~L~~L~L~~n~l 252 (598)
.+++++.++..+.- .......++-++++..+++.|..
T Consensus 242 vl~~ld~s~tgirlD~l~~~l~~g~~tkl~~~kls~ng~ 280 (553)
T KOG4242|consen 242 VLFKLDRSTTGIRLDLLTSPLAAGRTTKLTFGKLSRNGT 280 (553)
T ss_pred hhhcccccccccchhhcccccccccccccchhhhccCCC
Confidence 56667766664432 22223444455666666666543
|
|
| >PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A | Back alignment and domain information |
|---|
Probab=90.17 E-value=0.065 Score=29.82 Aligned_cols=13 Identities=46% Similarity=0.601 Sum_probs=4.8
Q ss_pred CCCEEECCCCcCc
Q 037325 547 FLYILDMSNNSLS 559 (598)
Q Consensus 547 ~L~~L~ls~N~l~ 559 (598)
+|++|+|++|+|+
T Consensus 3 ~L~~L~l~~n~i~ 15 (24)
T PF13516_consen 3 NLETLDLSNNQIT 15 (24)
T ss_dssp T-SEEE-TSSBEH
T ss_pred CCCEEEccCCcCC
Confidence 3444444444443
|
... |
| >smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily | Back alignment and domain information |
|---|
Probab=89.96 E-value=0.29 Score=27.74 Aligned_cols=14 Identities=57% Similarity=0.584 Sum_probs=8.1
Q ss_pred CCCCEEECCCCcCc
Q 037325 546 SFLYILDMSNNSLS 559 (598)
Q Consensus 546 ~~L~~L~ls~N~l~ 559 (598)
++|+.|+|++|+++
T Consensus 2 ~~L~~L~L~~N~l~ 15 (26)
T smart00369 2 PNLRELDLSNNQLS 15 (26)
T ss_pred CCCCEEECCCCcCC
Confidence 45556666666555
|
|
| >smart00370 LRR Leucine-rich repeats, outliers | Back alignment and domain information |
|---|
Probab=89.96 E-value=0.29 Score=27.74 Aligned_cols=14 Identities=57% Similarity=0.584 Sum_probs=8.1
Q ss_pred CCCCEEECCCCcCc
Q 037325 546 SFLYILDMSNNSLS 559 (598)
Q Consensus 546 ~~L~~L~ls~N~l~ 559 (598)
++|+.|+|++|+++
T Consensus 2 ~~L~~L~L~~N~l~ 15 (26)
T smart00370 2 PNLRELDLSNNQLS 15 (26)
T ss_pred CCCCEEECCCCcCC
Confidence 45556666666555
|
|
| >KOG0473 consensus Leucine-rich repeat protein [Function unknown] | Back alignment and domain information |
|---|
Probab=89.57 E-value=0.0087 Score=53.96 Aligned_cols=83 Identities=18% Similarity=0.098 Sum_probs=63.9
Q ss_pred CCcEEEEEcCCCCCCCCCCcccCCCCCcceecCccccCCCCCCEEeCCCCCCCCCCcchhccCCCCCCEEECcCCCCCcc
Q 037325 74 TASVIKLNLNNPFRDSFGSFEDDAGHELGGEISPSLLQLKDLEYLDLSMNNFTGFQVPEFIGSLKELRYLNLSGSFFSGT 153 (598)
Q Consensus 74 ~~~v~~L~L~~~~~~~~~~~~~~~~~~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~p~~~~~l~~L~~L~L~~n~l~~~ 153 (598)
..+|+.||++. +.+.. +-..++.++.+..||++.|.+. -+|..+.++..++.+++..|..+ .
T Consensus 41 ~kr~tvld~~s--------------~r~vn-~~~n~s~~t~~~rl~~sknq~~--~~~~d~~q~~e~~~~~~~~n~~~-~ 102 (326)
T KOG0473|consen 41 FKRVTVLDLSS--------------NRLVN-LGKNFSILTRLVRLDLSKNQIK--FLPKDAKQQRETVNAASHKNNHS-Q 102 (326)
T ss_pred cceeeeehhhh--------------hHHHh-hccchHHHHHHHHHhccHhhHh--hChhhHHHHHHHHHHHhhccchh-h
Confidence 56888898887 33332 2234566778888899988887 57888888888888888888887 7
Q ss_pred cchhccCCCCCCEEEccCCCC
Q 037325 154 IPQTLGNLSNLLYLDLNNFLD 174 (598)
Q Consensus 154 ~p~~l~~l~~L~~L~L~~n~~ 174 (598)
.|.+++..++++++++..+.+
T Consensus 103 ~p~s~~k~~~~k~~e~k~~~~ 123 (326)
T KOG0473|consen 103 QPKSQKKEPHPKKNEQKKTEF 123 (326)
T ss_pred CCccccccCCcchhhhccCcc
Confidence 888888899998888877653
|
|
| >smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily | Back alignment and domain information |
|---|
Probab=88.69 E-value=0.35 Score=27.37 Aligned_cols=20 Identities=45% Similarity=0.517 Sum_probs=17.1
Q ss_pred CCCCCEEEccCCCCcccCCcC
Q 037325 569 LRTVKFLVLRNNYLSGKLPLS 589 (598)
Q Consensus 569 l~~L~~L~l~~n~l~g~~P~~ 589 (598)
+++|++|++++|+++ .+|..
T Consensus 1 L~~L~~L~L~~N~l~-~lp~~ 20 (26)
T smart00369 1 LPNLRELDLSNNQLS-SLPPG 20 (26)
T ss_pred CCCCCEEECCCCcCC-cCCHH
Confidence 468999999999999 67765
|
|
| >smart00370 LRR Leucine-rich repeats, outliers | Back alignment and domain information |
|---|
Probab=88.69 E-value=0.35 Score=27.37 Aligned_cols=20 Identities=45% Similarity=0.517 Sum_probs=17.1
Q ss_pred CCCCCEEEccCCCCcccCCcC
Q 037325 569 LRTVKFLVLRNNYLSGKLPLS 589 (598)
Q Consensus 569 l~~L~~L~l~~n~l~g~~P~~ 589 (598)
+++|++|++++|+++ .+|..
T Consensus 1 L~~L~~L~L~~N~l~-~lp~~ 20 (26)
T smart00370 1 LPNLRELDLSNNQLS-SLPPG 20 (26)
T ss_pred CCCCCEEECCCCcCC-cCCHH
Confidence 468999999999999 67765
|
|
| >smart00364 LRR_BAC Leucine-rich repeats, bacterial type | Back alignment and domain information |
|---|
Probab=80.68 E-value=1.1 Score=25.35 Aligned_cols=16 Identities=50% Similarity=0.588 Sum_probs=8.7
Q ss_pred CCCEEECCCCcCccccc
Q 037325 547 FLYILDMSNNSLSGSTP 563 (598)
Q Consensus 547 ~L~~L~ls~N~l~~~~p 563 (598)
+|+.|++++|+++ .+|
T Consensus 3 ~L~~L~vs~N~Lt-~LP 18 (26)
T smart00364 3 SLKELNVSNNQLT-SLP 18 (26)
T ss_pred ccceeecCCCccc-cCc
Confidence 4555556666555 344
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 598 | ||||
| 3riz_A | 772 | Crystal Structure Of The Plant Steroid Receptor Bri | 6e-23 | ||
| 3rgx_A | 768 | Structural Insight Into Brassinosteroid Perception | 7e-23 | ||
| 1ogq_A | 313 | The Crystal Structure Of Pgip (Polygalacturonase In | 5e-10 | ||
| 1ogq_A | 313 | The Crystal Structure Of Pgip (Polygalacturonase In | 6e-10 | ||
| 1ogq_A | 313 | The Crystal Structure Of Pgip (Polygalacturonase In | 1e-06 | ||
| 2omu_A | 462 | Crystal Structure Of Inla G194s+s Y369s/hec1 Comple | 9e-05 | ||
| 2omt_A | 462 | Crystal Structure Of Inla G194s+sHEC1 COMPLEX Lengt | 1e-04 | ||
| 2omx_A | 462 | Crystal Structure Of Inla S192n G194s+sHEC1 COMPLEX | 1e-04 |
| >pdb|3RIZ|A Chain A, Crystal Structure Of The Plant Steroid Receptor Bri1 Ectodomain Length = 772 | Back alignment and structure |
|
| >pdb|3RGX|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1 Length = 768 | Back alignment and structure |
|
| >pdb|1OGQ|A Chain A, The Crystal Structure Of Pgip (Polygalacturonase Inhibiting Protein), A Leucine Rich Repeat Protein Involved In Plant Defense Length = 313 | Back alignment and structure |
|
| >pdb|1OGQ|A Chain A, The Crystal Structure Of Pgip (Polygalacturonase Inhibiting Protein), A Leucine Rich Repeat Protein Involved In Plant Defense Length = 313 | Back alignment and structure |
|
| >pdb|1OGQ|A Chain A, The Crystal Structure Of Pgip (Polygalacturonase Inhibiting Protein), A Leucine Rich Repeat Protein Involved In Plant Defense Length = 313 | Back alignment and structure |
|
| >pdb|2OMU|A Chain A, Crystal Structure Of Inla G194s+s Y369s/hec1 Complex Length = 462 | Back alignment and structure |
|
| >pdb|2OMT|A Chain A, Crystal Structure Of Inla G194s+sHEC1 COMPLEX Length = 462 | Back alignment and structure |
|
| >pdb|2OMX|A Chain A, Crystal Structure Of Inla S192n G194s+sHEC1 COMPLEX Length = 462 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768 | Back alignment and structure |
|---|
Score = 345 bits (887), Expect = e-110
Identities = 144/576 (25%), Positives = 239/576 (41%), Gaps = 79/576 (13%)
Query: 30 SGCQEAERKALLQFKQSLRDPSGQLSSW-VGEDCCSWSGVSCNNRTASVIKLNLNNPFRD 88
S E L+ FK L D L W ++ C++ GV+C + V ++L++
Sbjct: 7 SQSLYREIHQLISFKDVLPDK-NLLPDWSSNKNPCTFDGVTCRDD--KVTSIDLSSKPL- 62
Query: 89 SFGSFEDDAGHELGGEISPSLLQLKDLEYLDLSMNNFTGFQVPEFIGSLKELRYLNLSGS 148
+ +S SLL L LE L LS ++ G V F L L+LS +
Sbjct: 63 ----------NVGFSAVSSSLLSLTGLESLFLSNSHING-SVSGF-KCSASLTSLDLSRN 110
Query: 149 FFSGTIP--QTLGNLSNLLYLDL-NNFLDQSNQIDLEWLSGLSSLVYFNLGGADLSKAGA 205
SG + +LG+ S L +L++ +N L + L+SL +L +S A
Sbjct: 111 SLSGPVTTLTSLGSCSGLKFLNVSSNTL--DFPGKVSGGLKLNSLEVLDLSANSISGANV 168
Query: 206 YWLEVFNKLHSFVELHLPNCNLPSLPLSFPSLNFASLQVLDLSNNDFNSTTPHWLFNITS 265
+ + L + + +L+ LD+S+N+F++ P +L + ++
Sbjct: 169 VGWVLSDGCGELKHLAISGNKISG---DVDVSRCVNLEFLDVSSNNFSTGIP-FLGDCSA 224
Query: 266 LLCLDLGSNDLQGDIPDGFASLNSLQELDLSGNSFLGGQLSRNLGKLCNLRTMILSRNNI 325
L LD+ N L GD ++ L+ L++S N F G + L +L+ + L+ N
Sbjct: 225 LQHLDISGNKLSGDFSRAISTCTELKLLNISSNQF-VGPIPP--LPLKSLQYLSLAENKF 281
Query: 326 SSEVSDFLDGLSECTNSILLEKLELRFNQFTGILPISLGSLKNLRHLVLWQNSFLGSIPP 385
+ E+ DFL G L L+L N F G +P GS L L L N+F G +P
Sbjct: 282 TGEIPDFLSG-----ACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPM 336
Query: 386 -SIGNLTLLKELYLASNQMNGQKISDSYQHLKNQTELRTLVLNKARISDTISDWFWQLSL 444
++ + LK L L+ N+ +G + + LS
Sbjct: 337 DTLLKMRGLKVLDLSFNEFSG----------------------------ELPESLTNLSA 368
Query: 445 TLDELDVAYNELRGRVPNSLGFNFPAK---VDLSFNNFEGRLLLWSFNVTKL---YLRDN 498
+L LD++ N G + +L N + L N F G++ N ++L +L N
Sbjct: 369 SLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFN 428
Query: 499 SFSGLIPNDIGQNLPFLTDLGNLKQLITLVISNNNLSGEIPLLFSNISFLYILDMSNNSL 558
SG IP+ LG+L +L L + N L GEIP + L L + N L
Sbjct: 429 YLSGTIPSS----------LGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDL 478
Query: 559 SGSTPESIGSLRTVKFLVLRNNYLSGKLPLSLKNCT 594
+G P + + + ++ L NN L+G++P +
Sbjct: 479 TGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLE 514
|
| >3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768 | Back alignment and structure |
|---|
Score = 270 bits (692), Expect = 3e-81
Identities = 141/494 (28%), Positives = 216/494 (43%), Gaps = 38/494 (7%)
Query: 101 LGGEISPSLLQLKDLEYLDLSMNNFTGFQVPEFIGSLKELRYLNLSGSFFSGTIPQTLGN 160
G I P LK L+YL L+ N FTG G+ L L+LSG+ F G +P G+
Sbjct: 259 FVGPIPPL--PLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGS 316
Query: 161 LSNLLYLDL-NNFLDQSNQIDLEWLSGLSSLVYFNLGGADLSKAGAYWLEVFNKLHSFVE 219
S L L L +N S ++ ++ L + L +L + S G + N S +
Sbjct: 317 CSLLESLALSSNNF--SGELPMDTLLKMRGLKVLDLSFNEFS--GELPESLTNLSASLLT 372
Query: 220 LHLPNCNLP-SLPLSFPSLNFASLQVLDLSNNDFNSTTPHWLFNITSLLCLDLGSNDLQG 278
L L + N + + +LQ L L NN F P L N + L+ L L N L G
Sbjct: 373 LDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSG 432
Query: 279 DIPDGFASLNSLQELDLSGNSFLGGQLSRNLGKLCNLRTMILSRNNISSEVSDFLDGLSE 338
IP SL+ L++L L N G++ + L + L T+IL N+++ E+ GLS
Sbjct: 433 TIPSSLGSLSKLRDLKLWLNML-EGEIPQELMYVKTLETLILDFNDLTGEIPS---GLSN 488
Query: 339 CTNSILLEKLELRFNQFTGILPISLGSLKNLRHLVLWQNSFLGSIPPSIGNLTLLKELYL 398
CTN L + L N+ TG +P +G L+NL L L NSF G+IP +G+ L L L
Sbjct: 489 CTN---LNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDL 545
Query: 399 ASNQMNGQKISDSYQHLKNQTELRTLVLNKARISDTISDWFWQLS-LTLDELDVAYNELR 457
+N NG I + + + I+ + E +
Sbjct: 546 NTNLFNG-TIPAAMFKQ-------SGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQ 597
Query: 458 GRVPNSLG-FNFPAKVDLSFNNFEGRLLLWSFN---VTKLYLRDNSFSGLIPNDIGQNLP 513
G L + +++ + G N + L + N SG IP +IG
Sbjct: 598 GIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIG---- 653
Query: 514 FLTDLGNLKQLITLVISNNNLSGEIPLLFSNISFLYILDMSNNSLSGSTPESIGSLRTVK 573
++ L L + +N++SG IP ++ L ILD+S+N L G P+++ +L +
Sbjct: 654 ------SMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLT 707
Query: 574 FLVLRNNYLSGKLP 587
+ L NN LSG +P
Sbjct: 708 EIDLSNNNLSGPIP 721
|
| >3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768 | Back alignment and structure |
|---|
Score = 158 bits (401), Expect = 4e-41
Identities = 88/375 (23%), Positives = 139/375 (37%), Gaps = 78/375 (20%)
Query: 101 LGGEISPSLLQLKDLEYLDLSMNNFTGFQVPEFIGSLKELRYLNLSGSFFSGTIPQTLGN 160
L G I SL L L L L +N G ++P+ + +K L L L + +G IP L N
Sbjct: 430 LSGTIPSSLGSLSKLRDLKLWLNMLEG-EIPQELMYVKTLETLILDFNDLTGEIPSGLSN 488
Query: 161 LSNLLYLDLNNFLDQSNQID---LEWLSGLSSLVYFNLGGADLSKAGAYWLEVFNKLHSF 217
+NL ++ L+N N++ +W+ L +L L N
Sbjct: 489 CTNLNWISLSN-----NRLTGEIPKWIGRLENLAILKLSN--------------NSFSG- 528
Query: 218 VELHLPNCNLPSLPLSFPSLNFASLQVLDLSNNDFNSTTPHWLFNITSLLCLDLGSNDLQ 277
++P + SL LDL+ N FN T P +F + + +N +
Sbjct: 529 -----------NIPAELG--DCRSLIWLDLNTNLFNGTIPAAMFKQS----GKIAANFIA 571
Query: 278 GDIPDGFASLNSLQELDLSGNSF-LGGQLSRNLGKLCNLRTMILSRNNISSEVSDFLDGL 336
G + +E +GN G S L +L ++ S D
Sbjct: 572 GKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNN 631
Query: 337 SECTNSILLEKLELRFNQFTGILPISLGSLKNLRHLVLWQNSFLGSIPPSIGNLTLLKEL 396
+ L++ +N +G +P +GS+ L L L N GSIP +G+L L L
Sbjct: 632 G------SMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNIL 685
Query: 397 YLASNQMNGQKISDSYQHLKNQTELRTLVLNKARISDTISDWFWQLSLTLDELDVAYNEL 456
L+SN+++G I L+ L E+D++ N L
Sbjct: 686 DLSSNKLDG----------------------------RIPQAMSALT-MLTEIDLSNNNL 716
Query: 457 RGRVPNSLGF-NFPA 470
G +P F FP
Sbjct: 717 SGPIPEMGQFETFPP 731
|
| >3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768 | Back alignment and structure |
|---|
Score = 80.7 bits (200), Expect = 5e-16
Identities = 43/210 (20%), Positives = 71/210 (33%), Gaps = 57/210 (27%)
Query: 100 ELGGEISPSLLQLKDLEYLDLSMNNFTGFQVPEFIGSLKELRYLNLSGSFFSGTIPQTLG 159
E G S L +L +++ + G + + +L++S + SG IP+ +G
Sbjct: 595 EFQGIRSEQLNRLSTRNPCNITSRVYGG-HTSPTFDNNGSMMFLDMSYNMLSGYIPKEIG 653
Query: 160 NLSNLLYLDLNNFLDQSNQIDLEWLSGLSSLVYFNLGGADLSKAGAYWLEVFNKLHSFVE 219
++ L L+L N +SG
Sbjct: 654 SMPYLFILNL-----GHND-----ISG--------------------------------- 670
Query: 220 LHLPNCNLPSLPLSFPSLNFASLQVLDLSNNDFNSTTPHWLFNITSLLCLDLGSNDLQGD 279
S+P L L +LDLS+N + P + +T L +DL +N+L G
Sbjct: 671 ---------SIPDEVGDLR--GLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGP 719
Query: 280 IPDGFASLNSLQELDLSGNSFL-GGQLSRN 308
IP+ + N L G L R
Sbjct: 720 IPEM-GQFETFPPAKFLNNPGLCGYPLPRC 748
|
| >3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768 | Back alignment and structure |
|---|
Score = 73.0 bits (180), Expect = 1e-13
Identities = 34/102 (33%), Positives = 52/102 (50%), Gaps = 5/102 (4%)
Query: 95 DDAGHELGGEISPSLLQLKDLEYLDLSMNNFTGFQVPEFIGSLKELRYLNLSGSFFSGTI 154
+ GG SP+ + +LD+S N +G +P+ IGS+ L LNL + SG+I
Sbjct: 614 NITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSG-YIPKEIGSMPYLFILNLGHNDISGSI 672
Query: 155 PQTLGNLSNLLYLDL-NNFLDQSNQIDLEWLSGLSSLVYFNL 195
P +G+L L LDL +N L +I +S L+ L +L
Sbjct: 673 PDEVGDLRGLNILDLSSNKL--DGRIPQA-MSALTMLTEIDL 711
|
| >1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680 | Back alignment and structure |
|---|
Score = 199 bits (507), Expect = 9e-56
Identities = 111/518 (21%), Positives = 181/518 (34%), Gaps = 40/518 (7%)
Query: 100 ELGGEISPSLLQLKDLEYLDLSMNNFTGFQVPEFIGSLKELRYLNLSGSFFSGTIPQTLG 159
+ +L L+ L+L N + + L L+L +
Sbjct: 60 TISKLEPELCQKLPMLKVLNLQHNELSQLS-DKTFAFCTNLTELHLMSNSIQKIKNNPFV 118
Query: 160 NLSNLLYLDL-NNFLDQSNQIDLEWLSGLSSLVYFNLGGADLSKAGAYWLEVFNKLHSFV 218
NL+ LDL +N L + L L +L L + + L++F S
Sbjct: 119 KQKNLITLDLSHNGL---SSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFA-NSSLK 174
Query: 219 ELHLPNCNLPSL-PLSFPSLNFASLQVLDLSNNDFNSTTPHWLF---NITSLLCLDLGSN 274
+L L + + P F ++ L L L+N + L TS+ L L ++
Sbjct: 175 KLELSSNQIKEFSPGCFHAIG--RLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNS 232
Query: 275 DLQGDIPDGFASLN--SLQELDLSGNSFLGGQLSRNLGKLCNLRTMILSRNNISSEVSDF 332
L F L +L LDLS N L + + L L L NNI S
Sbjct: 233 QLSTTSNTTFLGLKWTNLTMLDLSYN-NLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHS 291
Query: 333 LDGLSECTNSIL---LEKLELRFNQFTGILPISLGSLKNLRHLVLWQNSFLGSIPPSIGN 389
L GL L K + I S LK L HL + N G
Sbjct: 292 LHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTG 351
Query: 390 LTLLKELYLASNQMNGQKISDSYQHLKNQTELRTLVLNKARISDTISDWFWQLSLTLDEL 449
L LK L L+++ + + +++ + L L L K +IS SD F L L+ L
Sbjct: 352 LINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLG-HLEVL 410
Query: 450 DVAYNELRGRVPNSLGFNFPA--KVDLSFNNFEG---RLLLWSFNVTKLYLRDNSFSGLI 504
D+ NE+ + ++ LS+N + ++ +L LR + +
Sbjct: 411 DLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVD 470
Query: 505 PNDIGQNLPFLTDLGNLKQLITLVISNNNLSGEIPLLFSNISFLYILDMSNNSLS----- 559
+ + L+ L L +SNNN++ + + L ILD+ +N+L+
Sbjct: 471 SS--------PSPFQPLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKH 522
Query: 560 ---GSTPESIGSLRTVKFLVLRNNYLSGKLPLSLKNCT 594
G + L + L L +N K+
Sbjct: 523 ANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLF 560
|
| >1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680 | Back alignment and structure |
|---|
Score = 197 bits (502), Expect = 4e-55
Identities = 114/507 (22%), Positives = 196/507 (38%), Gaps = 50/507 (9%)
Query: 101 LGGEISPSLLQLKDLEYLDLSMNNFTGFQVPEFIGSLKELRYLNLSGSFFSGTIPQTLGN 160
L + + + L LD+ N + + PE L L+ LNL + S +T
Sbjct: 37 LRRLPAANFTRYSQLTSLDVGFNTISKLE-PELCQKLPMLKVLNLQHNELSQLSDKTFAF 95
Query: 161 LSNLLYLDL-NNFLDQSNQIDLEWLSGLSSLVYFNLGGADLSKAGAYWLEVFNKLHSFVE 219
+NL L L +N + +I +L+ +L LS L +L + E
Sbjct: 96 CTNLTELHLMSNSI---QKIKNNPFVKQKNLITLDLSHNGLSSTK---LGTQVQLENLQE 149
Query: 220 LHLPNCNLPSLPLS-FPSLNFASLQVLDLSNNDFNSTTPHWLFNITSLLCLDLGSNDLQG 278
L L N + +L +SL+ L+LS+N +P I L L L + L
Sbjct: 150 LLLSNNKIQALKSEELDIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGP 209
Query: 279 DIPDGFA---SLNSLQELDLSGNSFLGGQLSRNLG-KLCNLRTMILSRNNISSEVSDFLD 334
+ + + S++ L LS + + LG K NL + LS NN++ +D
Sbjct: 210 SLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFA 269
Query: 335 GLSECTNSILLEKLELRFNQFTGILPISLGSLKNLRHLVLWQNSFLGSI---------PP 385
L + LE L +N + SL L N+R+L L ++ SI
Sbjct: 270 WLPQ------LEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDF 323
Query: 386 SIGNLTLLKELYLASNQMNGQKISDSYQHLKNQTELRTLVLNKARISDTISDWFWQLSLT 445
S L L+ L + N + G S+ + L N L L + + ++ F L+ +
Sbjct: 324 SFQWLKCLEHLNMEDNDIPGI-KSNMFTGLINLKYLS-LSNSFTSLRTLTNETFVSLAHS 381
Query: 446 -LDELDVAYNELRGRVPNSLGFNFPA--KVDLSFNNFEGRLLLWSF----NVTKLYLRDN 498
L L++ N++ ++ +DL N L + N+ ++YL N
Sbjct: 382 PLHILNLTKNKISKIESDAFS-WLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYN 440
Query: 499 SFSGLIPNDIGQNLPFLTDLGNLKQLITLVISNNNLSG--EIPLLFSNISFLYILDMSNN 556
+ L N + L L++ L P F + L ILD+SNN
Sbjct: 441 KYLQLTRN----------SFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNN 490
Query: 557 SLSGSTPESIGSLRTVKFLVLRNNYLS 583
+++ + + L ++ L L++N L+
Sbjct: 491 NIANINDDMLEGLEKLEILDLQHNNLA 517
|
| >1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680 | Back alignment and structure |
|---|
Score = 187 bits (478), Expect = 1e-51
Identities = 99/515 (19%), Positives = 182/515 (35%), Gaps = 40/515 (7%)
Query: 101 LGGEISPSLLQLKDLEYLDLSMNNFTGFQVPEFIGSLKELRYLNLSGSFFSGTIPQTLGN 160
+ + ++ K+L LDLS N + ++ L+ L+ L LS + + L
Sbjct: 109 IQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQ-VQLENLQELLLSNNKIQALKSEELDI 167
Query: 161 LSN--LLYLDL-NNFLDQSNQIDLEWLSGLSSLVYFNLGGADLSKAGAYWLEVFNKLHSF 217
+N L L+L +N + + + L L L + L + S
Sbjct: 168 FANSSLKKLELSSNQI---KEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSI 224
Query: 218 VELHLPNCNLPSL-PLSFPSLNFASLQVLDLSNNDFNSTTPHWLFNITSLLCLDLGSNDL 276
L L N L + +F L + +L +LDLS N+ N + L L N++
Sbjct: 225 RNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNI 284
Query: 277 QGDIPDGFASL---------NSLQELDLSGNSFLGGQLSRNLGKLCNLRTMILSRNNISS 327
Q L S + +S S L + L L + + N+I
Sbjct: 285 QHLFSHSLHGLFNVRYLNLKRSFTKQSISLAS-LPKIDDFSFQWLKCLEHLNMEDNDIPG 343
Query: 328 EVSDFLDGLSECTNSILLEKLELRFN--QFTGILPISLGSLKN--LRHLVLWQNSFLGSI 383
S+ GL L+ L L + + + SL + L L L +N
Sbjct: 344 IKSNMFTGLIN------LKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIE 397
Query: 384 PPSIGNLTLLKELYLASNQMNGQKISDSYQHLKNQTELRTLVLNKARISDTISDWFWQLS 443
+ L L+ L L N++ + ++ L+N + + L+ + + F +
Sbjct: 398 SDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLEN---IFEIYLSYNKYLQLTRNSFALVP 454
Query: 444 LTLDELDVAYNELRGRVPNSLGF-NFPA--KVDLSFNNFEG---RLLLWSFNVTKLYLRD 497
+L L + L+ + F +DLS NN +L + L L+
Sbjct: 455 -SLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQH 513
Query: 498 NSFSGLIPNDIGQNLPFLTDLGNLKQLITLVISNNNLSGEIPLLFSNISFLYILDMSNNS 557
N+ + L + + L L L L + +N +F ++ L I+D+ N+
Sbjct: 514 NNLARLWKHANPGGPIYF--LKGLSHLHILNLESNGFDEIPVEVFKDLFELKIIDLGLNN 571
Query: 558 LSGSTPESIGSLRTVKFLVLRNNYLSGKLPLSLKN 592
L+ + ++K L L+ N ++
Sbjct: 572 LNTLPASVFNNQVSLKSLNLQKNLITSVEKKVFGP 606
|
| >1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680 | Back alignment and structure |
|---|
Score = 172 bits (439), Expect = 2e-46
Identities = 93/495 (18%), Positives = 168/495 (33%), Gaps = 55/495 (11%)
Query: 108 SLLQLKDLEYLDLSMNNFTGFQVPEFIGSLKELRYLNLSGSFFSGTIPQTLG---NLSNL 164
+ L+ L+LS N F P ++ L L L+ ++ + L +++
Sbjct: 166 DIFANSSLKKLELSSNQIKEFS-PGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSI 224
Query: 165 LYLDLNNFLDQSNQIDLEWLSGLSSLVYFNLGGADLSKAGAYWLEVFNKLHSFVELHLPN 224
L L+N + ++L +L +L+ G + F L L
Sbjct: 225 RNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGN---DSFAWLPQLEYFFLEY 281
Query: 225 CNLPSL-PLSFPSLNFASLQVLDLSNN---------DFNSTTPHWLFNITSLLCLDLGSN 274
N+ L S L +++ L+L + + L L++ N
Sbjct: 282 NNIQHLFSHSLHGLF--NVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDN 339
Query: 275 DLQGDIPDGFASLNSLQELDLSGNSFLGGQLSRNLGK---LCNLRTMILSRNNISSEVSD 331
D+ G + F L +L+ L LS + L+ L + L++N IS SD
Sbjct: 340 DIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESD 399
Query: 332 FLDGLSECTNSILLEKLELRFNQFTGILPIS-LGSLKNLRHLVLWQNSFLGSIPPSIGNL 390
L LE L+L N+ L L+N+ + L N +L S +
Sbjct: 400 AFSWLGH------LEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALV 453
Query: 391 TLLKELYLASNQMNGQKISDSYQHLKNQTELRTLVLNKARISDTISDWFWQLSLTLDELD 450
L+ L L + + S + L L L+ I++ D L L+ LD
Sbjct: 454 PSLQRLMLRRVALKN--VDSSPSPFQPLRNLTILDLSNNNIANINDDMLEGLE-KLEILD 510
Query: 451 VAYNELRGRVPNSLGFNFPAKVDLSFNNFEGRLLLWSFNVTKLYLRDNSFSGLIPNDIGQ 510
+ +N L ++ ++ L L N F +
Sbjct: 511 LQHNNLARLWKHANPGGPI----YFLKGLS--------HLHILNLESNGFDEIPVEVFK- 557
Query: 511 NLPFLTDLGNLKQLITLVISNNNLSGEIPLLFSNISFLYILDMSNNSLSGSTPESIG-SL 569
+L +L + + NNL+ +F+N L L++ N ++ + G +
Sbjct: 558 ---------DLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEKKVFGPAF 608
Query: 570 RTVKFLVLRNNYLSG 584
R + L +R N
Sbjct: 609 RNLTELDMRFNPFDC 623
|
| >1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680 | Back alignment and structure |
|---|
Score = 157 bits (399), Expect = 5e-41
Identities = 85/370 (22%), Positives = 139/370 (37%), Gaps = 33/370 (8%)
Query: 219 ELHLPNCNLPSLPLSFPSLNFASLQVLDLSNNDFNSTTPHWLFNITSLLCLDLGSNDLQG 278
L+L + L LP + + ++ L LD+ N + P + L L+L N+L
Sbjct: 29 VLNLTHNQLRRLPAANFT-RYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQ 87
Query: 279 DIPDGFASLNSLQELDLSGNSFLGGQLSRNLGKLCNLRTMILSRNNISSEVSDFLDGLSE 338
FA +L EL L NS + + K NL T+ LS N +SS L
Sbjct: 88 LSDKTFAFCTNLTELHLMSNS-IQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLEN 146
Query: 339 CTNSILLEKLELRFNQFTGILPISLGSLKN--LRHLVLWQNSFLGSIPPSIGNLTLLKEL 396
L++L L N+ + L N L+ L L N P + L L
Sbjct: 147 ------LQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGL 200
Query: 397 YLASNQMNGQKISDSYQHLKNQTELRTLVLNKARISDTISDWFWQLSLT-LDELDVAYNE 455
+L + Q+ +++ T +R L L+ +++S T + F L T L LD++YN
Sbjct: 201 FLNNVQLGPS-LTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNN 259
Query: 456 LRGRVPNSLGFNFPAKVDLSFNNFEGRLLLWSFNVTKLYLRDNSFSGLIPNDIGQNLPFL 515
L +S W + +L N+ L + + L +
Sbjct: 260 LNVVGNDSFA--------------------WLPQLEYFFLEYNNIQHLFSHSLH-GLFNV 298
Query: 516 TDLGNLKQLITLVISNNNLSGEIPLLFSNISFLYILDMSNNSLSGSTPESIGSLRTVKFL 575
L + IS +L F + L L+M +N + G L +K+L
Sbjct: 299 RYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYL 358
Query: 576 VLRNNYLSGK 585
L N++ S +
Sbjct: 359 SLSNSFTSLR 368
|
| >1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680 | Back alignment and structure |
|---|
Score = 157 bits (398), Expect = 6e-41
Identities = 84/471 (17%), Positives = 151/471 (32%), Gaps = 61/471 (12%)
Query: 108 SLLQLKDLEYLDLSMNNFTGFQVPEFIG-SLKELRYLNLSGSFFSGTIPQTLGNLSNLLY 166
L + L LS + + F+G L L+LS + + + L L Y
Sbjct: 217 LELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEY 276
Query: 167 LDL-NNFLDQSNQIDLEWLSGLSSLVYFNLGGADLSKAGAYW------LEVFNKLHSFVE 219
L N + + L GL ++ Y NL + ++ + F L
Sbjct: 277 FFLEYNNI---QHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEH 333
Query: 220 LHLPNCNLPSLPLSFPSLNFASLQVLDLSNNDFNSTTPH----WLFNITSLLCLDLGSND 275
L++ + ++P + + + +L+ L LSN+ + T + L L+L N
Sbjct: 334 LNMEDNDIPGIKSNMFT-GLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNK 392
Query: 276 LQGDIPDGFASLNSLQELDLSGNSFLGGQLSRNLGKLCNLRTMILSRNNISSEVSDFLDG 335
+ D F+ L L+ LDL N + L N+ + LS N +
Sbjct: 393 ISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFAL 452
Query: 336 LSECTNSILLEKLELRFNQFTGI--LPISLGSLKNLRHLVLWQNSFLGSIPPSIGNLTLL 393
+ L++L LR + P L+NL L L N+ + L L
Sbjct: 453 VPS------LQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLEGLEKL 506
Query: 394 KELYLASNQM----NGQKISDSYQHLKNQTELRTLVLNKARISDTISDWFWQLSLTLDEL 449
+ L L N + LK + L L L + + F L L +
Sbjct: 507 EILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLF-ELKII 565
Query: 450 DVAYNELRGRVPNSLGFNFPAKVDLSFNNFEGRLLLWSFNVTKLYLRDNSFSGLIPNDIG 509
D+ N L + + ++ L L+ N + + G
Sbjct: 566 DLGLNNLNTLPASVFN-------NQV-------------SLKSLNLQKNLITSVEKKVFG 605
Query: 510 QNLPFLTDLGNLKQLITLVISNNNLSGEIPLLFSNISFLYILDMSNNSLSG 560
LT L + N + F+ ++ ++ ++
Sbjct: 606 PAFRNLT---------ELDMRFNPFDCTCESIA---WFVNWINETHTNIPE 644
|
| >1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680 | Back alignment and structure |
|---|
Score = 151 bits (384), Expect = 4e-39
Identities = 70/372 (18%), Positives = 124/372 (33%), Gaps = 41/372 (11%)
Query: 241 SLQVLDLSNNDFNSTTPHWLFNITSLLCLDLGSNDLQGDIPDGFASLNSLQELDLSGNSF 300
S +V D S+ + P L T++ L+L N L+ F + L LD+ N+
Sbjct: 5 SHEVADCSHLKL-TQVPDDLP--TNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNT- 60
Query: 301 LGGQLSRNLGKLCNLRTMILSRNNISSEVSDFLDGLSECTNSILLEKLELRFNQFTGILP 360
+ KL L+ + L N +S + L +L L N I
Sbjct: 61 ISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTN------LTELHLMSNSIQKIKN 114
Query: 361 ISLGSLKNLRHLVLWQNSFLGSIPPSIGNLTLLKELYLASNQMNGQKISDSYQHLKNQTE 420
KNL L L N + + L L+EL L++N++ + + +
Sbjct: 115 NPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQA--LKSEELDIFANSS 172
Query: 421 LRTLVLNKARISDTISDWFWQLSLTLDELDVAYNELRGRVPNSLGFNFPAK----VDLSF 476
L+ L L+ +I + F + L L + +L + L + LS
Sbjct: 173 LKKLELSSNQIKEFSPGCFHAIG-RLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSN 231
Query: 477 NNFEG-----RLLLWSFNVTKLYLRDNSFSGLIPNDIGQNLPFLTDLGNLKQLITLVISN 531
+ L L N+T L L N+ + + + L QL +
Sbjct: 232 SQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGND----------SFAWLPQLEYFFLEY 281
Query: 532 NNLSGEIPLLFSNISFLYILDMSNN---------SLSGSTPESIGSLRTVKFLVLRNNYL 582
NN+ + + L++ + SL S L+ ++ L + +N +
Sbjct: 282 NNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDI 341
Query: 583 SGKLPLSLKNCT 594
G
Sbjct: 342 PGIKSNMFTGLI 353
|
| >1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680 | Back alignment and structure |
|---|
Score = 138 bits (351), Expect = 7e-35
Identities = 94/388 (24%), Positives = 146/388 (37%), Gaps = 38/388 (9%)
Query: 101 LGGEISPSLLQLKDLEYLDLSMNNFTGFQVPEFIGSLKELRYLNLSGSFFSGTI------ 154
L + S L LEY L NN + L +RYLNL SF +I
Sbjct: 260 LNVVGNDSFAWLPQLEYFFLEYNNIQHL-FSHSLHGLFNVRYLNLKRSFTKQSISLASLP 318
Query: 155 ---PQTLGNLSNLLYLDL-NNFLDQSNQIDLEWLSGLSSLVYFNLGGADLSKAGAYWLEV 210
+ L L +L++ +N + I +GL +L Y +L + S
Sbjct: 319 KIDDFSFQWLKCLEHLNMEDNDI---PGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETF 375
Query: 211 FNKLHSFVE-LHLPNCNLPSL-PLSFPSLNFASLQVLDLSNNDFNSTTPHWLF-NITSLL 267
+ HS + L+L + + +F L L+VLDL N+ + + ++
Sbjct: 376 VSLAHSPLHILNLTKNKISKIESDAFSWLG--HLEVLDLGLNEIGQELTGQEWRGLENIF 433
Query: 268 CLDLGSNDLQGDIPDGFASLNSLQELDLSGNSFLGGQLSRN-LGKLCNLRTMILSRNNIS 326
+ L N + FA + SLQ L L + S + L NL + LS NNI+
Sbjct: 434 EIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIA 493
Query: 327 SEVSDFLDGLSECTNSILLEKLELRFNQFT--------GILPISLGSLKNLRHLVLWQNS 378
+ D L+GL + LE L+L+ N G L L +L L L N
Sbjct: 494 NINDDMLEGLEK------LEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNG 547
Query: 379 FLGSIPPSIGNLTLLKELYLASNQMNGQKISDSYQHLKNQTELRTLVLNKARISDTISDW 438
F +L LK + L N +N + + + + L++L L K I+
Sbjct: 548 FDEIPVEVFKDLFELKIIDLGLNNLNTL-PASVFNNQVS---LKSLNLQKNLITSVEKKV 603
Query: 439 FWQLSLTLDELDVAYNELRGRVPNSLGF 466
F L ELD+ +N + F
Sbjct: 604 FGPAFRNLTELDMRFNPFDCTCESIAWF 631
|
| >1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680 | Back alignment and structure |
|---|
Score = 63.1 bits (154), Expect = 2e-10
Identities = 44/187 (23%), Positives = 69/187 (36%), Gaps = 16/187 (8%)
Query: 103 GEISPSLLQLKDLEYLDLSMNNFTGFQVPEFIGSLKELRYLNLSG--------SFFSGTI 154
L++L LDLS NN + + L++L L+L G
Sbjct: 470 DSSPSPFQPLRNLTILDLSNNNIANIN-DDMLEGLEKLEILDLQHNNLARLWKHANPGGP 528
Query: 155 PQTLGNLSNLLYLDL-NNFLDQSNQIDLEWLSGLSSLVYFNLGGADLSKAGAYWLEVFNK 213
L LS+L L+L +N D+ I +E L L +LG +L+ A VFN
Sbjct: 529 IYFLKGLSHLHILNLESNGFDE---IPVEVFKDLFELKIIDLGLNNLNTLPA---SVFNN 582
Query: 214 LHSFVELHLPNCNLPSLPLSFPSLNFASLQVLDLSNNDFNSTTPHWLFNITSLLCLDLGS 273
S L+L + S+ F +L LD+ N F+ T + + +
Sbjct: 583 QVSLKSLNLQKNLITSVEKKVFGPAFRNLTELDMRFNPFDCTCESIAWFVNWINETHTNI 642
Query: 274 NDLQGDI 280
+L
Sbjct: 643 PELSSHY 649
|
| >4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636 | Back alignment and structure |
|---|
Score = 186 bits (473), Expect = 3e-51
Identities = 83/592 (14%), Positives = 179/592 (30%), Gaps = 89/592 (15%)
Query: 36 ERKALLQFKQSLRDPSGQLSSWVGEDCCSWS------------GVSCNNRTASVIKLNLN 83
+ AL + +L + + + +W+ GVS N+ V L+L
Sbjct: 31 DYLALKEIWDALNGKNWSQQGFGTQPGANWNFNKELDMWGAQPGVSLNSNG-RVTGLSLE 89
Query: 84 NPFRDSFGSFEDDAGHELGGEISPSLLQLKDLEYLDLSMNNFTGFQVPEFIGSLKELRYL 143
G + ++ QL +LE L L + + +
Sbjct: 90 G--------------FGASGRVPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSD 135
Query: 144 NLSGSFFSGTIPQTLGNLSNLLYLDLNNFLDQSNQIDLEWLSGLSSLVYFNLGGADLSKA 203
+ + DL S+ +
Sbjct: 136 EQKQKMRMHYQKTFVDYDPREDFSDLIKDCINSDPQQKSIKKSSRITLKDT--------- 186
Query: 204 GAYWLEVFNKLHSFVELHLPNCNLPSLPLSFPSLNFASLQVLDLSNNDFNSTTPHWLFNI 263
++ + N+ + + L L+ + N+ F +
Sbjct: 187 ---------------QIGQLSNNITFVSKAVMRLT--KLRQFYMGNSPFVAENI-----C 224
Query: 264 TSLLCLDLGSNDLQGDIPDGFASLNSLQELDLSGNSFLGGQLSRNLGKLCNLRTMILSRN 323
+ + + +L L ++++ L +L L L ++ + ++ N
Sbjct: 225 EAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNL-TKLPTFLKALPEMQLINVACN 283
Query: 324 NISS--EVSDFLDGLSECTNSILLEKLELRFNQFTGI-LPISLGSLKNLRHLVLWQNSFL 380
S ++ D L++ ++ + + +N + SL +K L L N
Sbjct: 284 RGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLKTFPVETSLQKMKKLGMLECLYNQLE 343
Query: 381 GSIPPSIGNLTLLKELYLASNQMNGQKISDSYQHLKNQTELRTLVLNKARISDTISDWFW 440
G P+ G+ L L LA NQ+ ++ + + L ++ + +
Sbjct: 344 G-KLPAFGSEIKLASLNLAYNQITEI-PANFCGFTEQ---VENLSFAHNKLKYIPNIFDA 398
Query: 441 QLSLTLDELDVAYNELRGRVPNSLGFNFPA--------KVDLSFNNFEG---RLLLWSFN 489
+ + +D +YNE+ + P ++LS N L
Sbjct: 399 KSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSP 458
Query: 490 VTKLYLRDNSFSGLIPNDIGQNLPFLTDLGNLKQLITLVISNNNLSGEIP-LLFSNISFL 548
++ + L N + + N + + N L ++ + N L+ + + +L
Sbjct: 459 LSSINLMGNMLTEIPKNSLK---DENENFKNTYLLTSIDLRFNKLTKLSDDFRATTLPYL 515
Query: 549 YILDMSNNSLSGSTPESIGSLRTVKFLVLRN------NYLSGKLPLSLKNCT 594
+D+S NS S P + T+K +RN N + P + C
Sbjct: 516 VGIDLSYNSFSK-FPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCP 566
|
| >4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636 | Back alignment and structure |
|---|
Score = 162 bits (412), Expect = 5e-43
Identities = 69/526 (13%), Positives = 139/526 (26%), Gaps = 74/526 (14%)
Query: 92 SFEDDAGHELGGEISPSLLQLKDLEYLDLSMNNFTGFQVPEFIGSLKELRYLNLSGSFFS 151
+ I S + NN T V + + L +LR + S F
Sbjct: 162 IKDCINSDPQQKSIKKSSRITLKDTQIGQLSNNITF--VSKAVMRLTKLRQFYMGNSPFV 219
Query: 152 GTIPQTLGNLSNLLYLDLNNFLDQSNQIDLEWLSGLSSLVYFNLGGADLSKAGAYWL-EV 210
N Y D L L + L
Sbjct: 220 AENICEAWENENSEYAQQYKTEDLK-------WDNLKDLTDVEVYNCPNLTK----LPTF 268
Query: 211 FNKLHSFVELHLPNCNLPSLPLSFPSLNF-------ASLQVLDLSNNDFNS-TTPHWLFN 262
L +++ S +Q++ + N+ + L
Sbjct: 269 LKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLKTFPVETSLQK 328
Query: 263 ITSLLCLDLGSNDLQGDIPDGFASLNSLQELDLSGNSFLGGQLSRNLGKLC-NLRTMILS 321
+ L L+ N L+G F S L L+L+ N + N + + +
Sbjct: 329 MKKLGMLECLYNQLEG-KLPAFGSEIKLASLNLAYNQITE--IPANFCGFTEQVENLSFA 385
Query: 322 RNNISSEVSDFLDGLSECTNSILLEKLELRFNQFTGI-------LPISLGSLKNLRHLVL 374
N + + F + + ++ +N+ + L + N+ + L
Sbjct: 386 HNKLKYIPNIF--DAKSVSV---MSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINL 440
Query: 375 WQNSFLGSIPPSIGNLTLLKELYLASNQMNG---QKISDSYQHLKNQTELRTLVLNKARI 431
N + L + L N + + D ++ KN L ++ L ++
Sbjct: 441 SNNQISKFPKELFSTGSPLSSINLMGNMLTEIPKNSLKDENENFKNTYLLTSIDLRFNKL 500
Query: 432 SDTISDWFWQLSLTLDELDVAYNELRGRVPNSLGFNFPAKVDLSFNNFEGRLLLWSFNVT 491
+ D+ L +D++YN P + + +G
Sbjct: 501 TKLSDDFRATTLPYLVGIDLSYNSFSK-FPTQPL---------NSSTLKG--FGIRNQ-- 546
Query: 492 KLYLRDNSFSGLIPNDIGQNLPFLTDLGNLKQLITLVISNNNLSGEIPLLFSNISFLYIL 551
+ N P I L L I +N++ + N + +L
Sbjct: 547 -RDAQGNRTLREWPEGIT----------LCPSLTQLQIGSNDIRKVNEKITPN---ISVL 592
Query: 552 DMSNNSLSGSTPESIGSLRTVKFLVLRNNYLSGKLPLSLKNCTFQE 597
D+ +N + +L + ++ C +
Sbjct: 593 DIKDNPNISIDLSYVCPYIEAGMYMLFYDKTQ-----DIRGCDALD 633
|
| >4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636 | Back alignment and structure |
|---|
Score = 47.7 bits (114), Expect = 8e-06
Identities = 10/82 (12%), Positives = 26/82 (31%), Gaps = 4/82 (4%)
Query: 518 LGNLKQLITLVISNNNLSGEIPLLFSNISFLYILDMSNNSLSG----STPESIGSLRTVK 573
L + ++ L + SG +P ++ L +L + ++ P+ I + + +
Sbjct: 77 LNSNGRVTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDE 136
Query: 574 FLVLRNNYLSGKLPLSLKNCTF 595
+ F
Sbjct: 137 QKQKMRMHYQKTFVDYDPREDF 158
|
| >3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605 | Back alignment and structure |
|---|
Score = 184 bits (468), Expect = 8e-51
Identities = 98/511 (19%), Positives = 159/511 (31%), Gaps = 51/511 (9%)
Query: 114 DLEYLDLSMNNFTGFQVPEFIGSLKELRYLNLSGSFFSGTIPQTLGNLSNLLYLDL-NNF 172
+ LDLS N F S EL+ L+LS +LS+L L L N
Sbjct: 29 STKNLDLSFNPLRHLGSYSF-FSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNP 87
Query: 173 LDQSNQIDLEWLSGLSSLVYFNLGGADLSKAGAYWLEVFNKLHSFVELHLPNCNLPSLPL 232
+ + L SGLSSL +L+ L + EL++ + + S L
Sbjct: 88 I---QSLALGAFSGLSSLQKLVAVETNLASLEN---FPIGHLKTLKELNVAHNLIQSFKL 141
Query: 233 SFPSLNFASLQVLDLSNNDFNSTTPHWLFNITSL----LCLDLGSNDLQGDIPDGFASLN 288
N +L+ LDLS+N S L + + L LDL N + P F +
Sbjct: 142 PEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIR 201
Query: 289 SLQELDLSGNSFLGGQLSRNLGKLCNLRTMILSRNNISSEVSDFLDGLSECTNSILLEKL 348
L +L L N + + L L L +E + S L
Sbjct: 202 -LHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIE 260
Query: 349 ELRFNQ---FTGILPISLGSLKNLRHLVLWQNSFLGSIPPSIGNLTLLKELYLASNQMNG 405
E R + + L N+ L + + L L + +
Sbjct: 261 EFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTI--ERVKDFSYNFGWQHLELVNCKFGQ 318
Query: 406 ---------------QKISDSYQHLKNQTELRTLVL--NKARISDTISDWFWQLSLTLDE 448
+ + L L L N S + + +L
Sbjct: 319 FPTLKLKSLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTT-SLKY 377
Query: 449 LDVAYNELRGRVPNSLGFNFPAKVDLSFNNFEGRLLLWSF----NVTKLYLRDNSFSGLI 504
LD+++N + N LG +D +N + F N+ L +
Sbjct: 378 LDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAF 437
Query: 505 PNDIGQNLPFLTDLGNLKQLITLVISNNNLSGEI-PLLFSNISFLYILDMSNNSLSGSTP 563
L L L ++ N+ P +F+ + L LD+S L +P
Sbjct: 438 NGI----------FNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSP 487
Query: 564 ESIGSLRTVKFLVLRNNYLSGKLPLSLKNCT 594
+ SL +++ L + +N K
Sbjct: 488 TAFNSLSSLQVLNMSHNNFFSLDTFPYKCLN 518
|
| >3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605 | Back alignment and structure |
|---|
Score = 165 bits (421), Expect = 2e-44
Identities = 97/510 (19%), Positives = 164/510 (32%), Gaps = 56/510 (10%)
Query: 101 LGGEISPSLLQLKDLEYLDLSMNNFTGFQVPEFIGSLKELRYLNLSG-SFFSGTIPQTLG 159
+ + L L+ L N + IG LK L+ LN++ S +P+
Sbjct: 88 IQSLALGAFSGLSSLQKLVAVETNLASLE-NFPIGHLKTLKELNVAHNLIQSFKLPEYFS 146
Query: 160 NLSNLLYLDL-NNFLDQSNQIDLEWLSGLS-SLVYFNLGGADLSKAGAYWLEVFNKLHSF 217
NL+NL +LDL +N + DL L + + +L ++ F ++
Sbjct: 147 NLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNF---IQPGAFKEI-RL 202
Query: 218 VELHLPNCNLPSLPLSFPSLNFASLQVLDLSNNDFNST---TPHWLFNITSLLCLDLGSN 274
+L L N + A L+V L +F + + L L +
Sbjct: 203 HKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEF 262
Query: 275 DLQ------GDIPDGFASLNSLQELDLSGNSFLGGQLSRNLGKLCNLRTMILSRNNISSE 328
L DI D F L ++ L + ++ + + L
Sbjct: 263 RLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIER---VKDFSYNFGWQHLELVNCKFGQF 319
Query: 329 VSDFLDGLSECTNSILLEKLELRFNQFTGILPISLGSLKNLRHLVLWQN--SFLGSIPPS 386
+ L L L F G S L +L L L +N SF G S
Sbjct: 320 PTLKLKSL-----------KRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQS 368
Query: 387 IGNLTLLKELYLASNQMNGQKISDSYQHLKNQTELRTLVLNKARISDTISDWFWQLSLTL 446
T LK L L+ N + + +L L + + + L
Sbjct: 369 DFGTTSLKYLDLSFNG-----VITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNL 423
Query: 447 DELDVAYNELRGRVPNSLGFNFPA--KVDLSFNNFEGRLLLWSF----NVTKLYLRDNSF 500
LD+++ R + + ++ N+F+ L F N+T L L
Sbjct: 424 IYLDISHTHTRVAFNGIFN-GLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQL 482
Query: 501 SGLIPNDIGQNLPFLTDLGNLKQLITLVISNNNLSGEIPLLFSNISFLYILDMSNNSLSG 560
L P +L L L +S+NN + ++ L +LD S N +
Sbjct: 483 EQLSPTAFN----------SLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMT 532
Query: 561 STPESIGSL-RTVKFLVLRNNYLSGKLPLS 589
S + + ++ FL L N +
Sbjct: 533 SKKQELQHFPSSLAFLNLTQNDFACTCEHQ 562
|
| >3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605 | Back alignment and structure |
|---|
Score = 142 bits (360), Expect = 3e-36
Identities = 94/465 (20%), Positives = 163/465 (35%), Gaps = 47/465 (10%)
Query: 101 LGGEISPSLLQLKDLEY----LDLSMNNFTGFQVPEFIGSLKELRYLNLSGSFFSGTIPQ 156
+ L L + LDLS+N + L L L +F S + +
Sbjct: 161 IQSIYCTDLRVLHQMPLLNLSLDLSLNPMNF--IQPGAFKEIRLHKLTLRNNFDSLNVMK 218
Query: 157 T-LGNLSNL--LYLDLNNFLDQSN--QIDLEWLSGLSSLVYFNLGGADLSKAGAYWLEVF 211
T + L+ L L L F ++ N + D L GL +L A L +++F
Sbjct: 219 TCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLF 278
Query: 212 NKLHSFVELHLPNCNLPSLPLSFPSLNFASLQVLDLSNNDFNSTTPHWLFNITSLLCLDL 271
N L + L + + + Q L+L N F L ++ L
Sbjct: 279 NCLTNVSSFSLVSVTIERVK---DFSYNFGWQHLELVNCKFGQFPTLKLKSLKRLT---- 331
Query: 272 GSNDLQGDIPDGFASLNSLQELDLSGNSF-LGGQLSRNLGKLCNLRTMILSRNNISSEVS 330
+G L SL+ LDLS N G S++ +L+ + LS N + + S
Sbjct: 332 -FTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSS 390
Query: 331 DFLDGLSECTNSILLEKLELRFNQFTGILPIS-LGSLKNLRHLVLWQNSFLGSIPPSIGN 389
+FL LE L+ + + + S SL+NL +L + +
Sbjct: 391 NFL-------GLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNG 443
Query: 390 LTLLKELYLASNQMNGQKISDSYQHLKNQTELRTLVLNKARISDTISDWFWQLSLTLDEL 449
L+ L+ L +A N + D + L+N L L L++ ++ F LS +L L
Sbjct: 444 LSSLEVLKMAGNSFQENFLPDIFTELRN---LTFLDLSQCQLEQLSPTAFNSLS-SLQVL 499
Query: 450 DVAYNELRGRVPNSLGFNFPA--KVDLSFNNFEGR----LLLWSFNVTKLYLRDNSFSGL 503
++++N + +D S N+ L + ++ L L N F+
Sbjct: 500 NMSHNNFFSLDTFPYK-CLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFAC- 557
Query: 504 IPNDIGQNLPFLTDLGNLKQLITLVISNNNLSGEIPLLFSNISFL 548
+ L +K L++ + P + L
Sbjct: 558 -------TCEHQSFLQWIKDQRQLLVEVERMECATPSDKQGMPVL 595
|
| >3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605 | Back alignment and structure |
|---|
Score = 99.7 bits (249), Expect = 3e-22
Identities = 64/318 (20%), Positives = 103/318 (32%), Gaps = 40/318 (12%)
Query: 80 LNLNNPFRDSFGSFEDDAGHELGGEISPSLLQLKDLEYLDLSMNNFTGFQV-PEFIGSLK 138
S + G + S + L LE+LDLS N + +
Sbjct: 314 CKFGQFPTLKLKSLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTT 373
Query: 139 ELRYLNLSGSFFSGTIPQTLGNLSNLLYLDL-NNFLDQSNQIDLEWLSGLSSLVYFNLGG 197
L+YL+LS + T+ L L +LD ++ L + L +L+Y ++
Sbjct: 374 SLKYLDLSFNGVI-TMSSNFLGLEQLEHLDFQHSNL--KQMSEFSVFLSLRNLIYLDISH 430
Query: 198 ADLSKAGAYWLEVFNKLHSFVELHLPNCNLPSLPLSFPSLNFASLQVLDLSNNDFNSTTP 257
A +FN L S L + + L +L LDLS +P
Sbjct: 431 THTRVAFN---GIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSP 487
Query: 258 HWLFNITSLLCLDLGSNDLQGDIPDGFASLNSLQELDLSGNSFLGGQLSRNLGKLCNLRT 317
+++SL L++ N+ + LNSLQ LD S
Sbjct: 488 TAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSL-------------------- 527
Query: 318 MILSRNNISSEVSDFLDGLSECTNSILLEKLELRFNQFTGILPIS--LGSLKNLRHLVLW 375
N+I + L L L L N F L +K+ R L++
Sbjct: 528 -----NHIMTSKKQELQHFPS-----SLAFLNLTQNDFACTCEHQSFLQWIKDQRQLLVE 577
Query: 376 QNSFLGSIPPSIGNLTLL 393
+ P + +L
Sbjct: 578 VERMECATPSDKQGMPVL 595
|
| >3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605 | Back alignment and structure |
|---|
Score = 66.2 bits (162), Expect = 1e-11
Identities = 18/124 (14%), Positives = 36/124 (29%), Gaps = 10/124 (8%)
Query: 471 KVDLSFNNFEGRLLLWSFNVTKLYLRDNSFSGLIPNDIGQNLPFLTDLGNLKQLITLVIS 530
NF F+ L L N L + +L L +S
Sbjct: 11 TYQCMELNFYKIPDNLPFSTKNLDLSFNPLRHLGSYS----------FFSFPELQVLDLS 60
Query: 531 NNNLSGEIPLLFSNISFLYILDMSNNSLSGSTPESIGSLRTVKFLVLRNNYLSGKLPLSL 590
+ + ++S L L ++ N + + L +++ LV L+ +
Sbjct: 61 RCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPI 120
Query: 591 KNCT 594
+
Sbjct: 121 GHLK 124
|
| >4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876 | Back alignment and structure |
|---|
Score = 182 bits (463), Expect = 4e-49
Identities = 86/580 (14%), Positives = 183/580 (31%), Gaps = 87/580 (15%)
Query: 42 QFKQSLRDPSGQLSSW-VGEDCCSWS---GVSCNNRTASVIKLNLNNPFRDSFGSFEDDA 97
++ + + +W ++ W GV +N V L+L A
Sbjct: 287 RYYSGTINNTIHSLNWNFNKELDMWGDQPGVDLDNNG-RVTGLSL--------------A 331
Query: 98 GHELGGEISPSLLQLKDLEYLDLSMNNFTGFQVPEFIGSLKELRYLNLSGSFFSGTIPQT 157
G G + ++ QL +L+ L ++ T L
Sbjct: 332 GFGAKGRVPDAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHYKKMF 391
Query: 158 LGNLSNLLYLDL-NNFLDQSNQIDLEWLSGLSSLVYFNLGGADLSKAGAYWLEVFNKLHS 216
L L DL + ++++ ++ + +L
Sbjct: 392 LDYDQRLNLSDLLQDAINRNPEM-----KPIKKDSRISL--------------------K 426
Query: 217 FVELHLPNCNLPSLPLSFPSLNFASLQVLDLSNNDFNSTTPHWLFNITSLLCLDLGSNDL 276
++ + + + L LQ++ +N+ F +
Sbjct: 427 DTQIGNLTNRITFISKAIQRLT--KLQIIYFANSPFTYDNIA-----VDWEDANSDYAKQ 479
Query: 277 QGDIPDGFASLNSLQELDLSGNSFLGGQLSRNLGKLCNLRTMILSRNNISSEVSDFLDGL 336
+ +++L L +++L + QL L L L+++ ++ N S D
Sbjct: 480 YENEELSWSNLKDLTDVELYNCPNM-TQLPDFLYDLPELQSLNIACNRGISAAQLKADWT 538
Query: 337 S---ECTNSILLEKLELRFNQFTGI-LPISLGSLKNLRHLVLWQNSFLGSIPPSIGNLTL 392
+ ++ + +N SL + L L N + G
Sbjct: 539 RLADDEDTGPKIQIFYMGYNNLEEFPASASLQKMVKLGLLDCVHNKV--RHLEAFGTNVK 596
Query: 393 LKELYLASNQMNGQKISDSYQHLKNQTELRTLVLNKARISDTISDWFWQLSLT-LDELDV 451
L +L L NQ+ ++I + ++ L + ++ I + F S+ + +D
Sbjct: 597 LTDLKLDYNQI--EEIPED--FCAFTDQVEGLGFSHNKLK-YIPNIFNAKSVYVMGSVDF 651
Query: 452 AYNELRGRVPNSLGFNFPAK------VDLSFNNFEG---RLLLWSFNVTKLYLRDNSFSG 502
+YN++ N K V LS+N + L ++ + L +N +
Sbjct: 652 SYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQKFPTELFATGSPISTIILSNNLMTS 711
Query: 503 LIPNDIGQNLPFLTDLGNLKQLITLVISNNNLSGEIP--LLFSNISFLYILDMSNNSLSG 560
+ N + P + N L T+ + N L+ + + + +L +D+S N S
Sbjct: 712 IPENSLK---PKDGNYKNTYLLTTIDLRFNKLT-SLSDDFRATTLPYLSNMDVSYNCFS- 766
Query: 561 STPESIGSLRTVKFLVLR------NNYLSGKLPLSLKNCT 594
S P + +K +R N + + P + C
Sbjct: 767 SFPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCP 806
|
| >4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876 | Back alignment and structure |
|---|
Score = 154 bits (390), Expect = 1e-39
Identities = 80/511 (15%), Positives = 141/511 (27%), Gaps = 91/511 (17%)
Query: 103 GEISPSLLQLKDLEYLDLSMNNFTGFQVPEFIGSLKELRYLNLSGSFFSGTIPQTLGNLS 162
IS ++ +L L+ + + + FT + N + + NL
Sbjct: 438 TFISKAIQRLTKLQIIYFANSPFTYDNIAVD------WEDANSDYAKQYENEELSWSNLK 491
Query: 163 NLLYLDLNNFLDQSNQIDL--EWLSGLSSLVYFNL------GGADLSKAGAYWLEVFNKL 214
+L ++L N + ++L L L N+ A L + +
Sbjct: 492 DLTDVELYN----CPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTG 547
Query: 215 HSFVELHLPNCNLPSLPLSFPSLNFASLQVLDLSNNDFNSTTPHWLFNITSLLCLDLGSN 274
++ NL P S L +LD +N L L L N
Sbjct: 548 PKIQIFYMGYNNLEEFPASASLQKMVKLGLLDCVHNKV--RHLEAFGTNVKLTDLKLDYN 605
Query: 275 DLQGDIPDGFASLNSLQELDLSGNSFLGGQLSRNLGKLCNLRTMILSRNNISSEVSDFLD 334
++ D A + ++ L S N N + + ++ S N I SE +
Sbjct: 606 QIEEIPEDFCAFTDQVEGLGFSHNKLKYIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISC 665
Query: 335 GLSECTNSILLEKLELRFNQFTGILPISLGSLKNLRHLVLWQNSF-------LGSIPPSI 387
+ + I + L +N+ + + ++L N L +
Sbjct: 666 SMDDY-KGINASTVTLSYNEIQKFPTELFATGSPISTIILSNNLMTSIPENSLKPKDGNY 724
Query: 388 GNLTLLKELYLASNQMNGQKISDSYQHLKNQTELRTLVLNKARISDTISDWFWQLSLTLD 447
N LL + L N++ +SD L L
Sbjct: 725 KNTYLLTTIDLRFNKLTS-------------------------LSDDFR--ATTLP-YLS 756
Query: 448 ELDVAYNELRGRVPNSLG-FNFPAKVDLSFNNFEGRLLLWSFNVTKLYLRDNSFSGLIPN 506
+DV+YN P + + N P
Sbjct: 757 NMDVSYNCFSS-FPTQPLNSSQLKAFGIRHQ---------------RDAEGNRILRQWPT 800
Query: 507 DIGQNLPFLTDLGNLKQLITLVISNNNLSGEIPLLFSNISFLYILDMSNNSLSGSTPESI 566
I LI L I +N++ L LYILD+++N S+
Sbjct: 801 GIT----------TCPSLIQLQIGSNDIRKVDEKLTPQ---LYILDIADNPNISIDVTSV 847
Query: 567 GSLRTVKFLVLRNNYLSGKLPLSLKNCTFQE 597
VL + ++ C
Sbjct: 848 CPYIEAGMYVLLYDKTQ-----DIRGCDALG 873
|
| >4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876 | Back alignment and structure |
|---|
Score = 83.8 bits (207), Expect = 6e-17
Identities = 40/297 (13%), Positives = 80/297 (26%), Gaps = 29/297 (9%)
Query: 304 QLSRNLGKLCNLRTMILSRNNISSEVSDFLDGLSECTNSILLEKLELRFNQFTGILPISL 363
QL + + + + + + + G T L + + + L
Sbjct: 260 QLKETAEYIKDYKALKAIWEALDGKNWRYYSGTINNTIHSLNWNFNKELDMWGDQPGVDL 319
Query: 364 GSLKNLRHLVLWQNSFLGSIPPSIGNLTLLKELYLASNQMNGQKISDSYQHLKNQTELRT 423
+ + L L G +P +IG LT LK L ++ + L
Sbjct: 320 DNNGRVTGLSLAGFGAKGRVPDAIGQLTELKVLSFGTHSETVSGRLFGDEELT----PDM 375
Query: 424 LVLNKARISDTISDWFWQLSLTLDELDVAYNELRGRVPNSLGFNFPAKVDLSFNNFEGRL 483
K RI F L+ D+ + + R P +++ L
Sbjct: 376 SEERKHRIRMHYKKMFLDYDQRLNLSDLLQDAIN-RNPEMKPIKKDSRISLKDTQIGNLT 434
Query: 484 LLWSF---------NVTKLYLRDNSFSGLIPNDIGQNLPFLTDLGNLKQLITLVISNNNL 534
+F + +Y ++ F+
Sbjct: 435 NRITFISKAIQRLTKLQIIYFANSPFTYDNI---------------AVDWEDANSDYAKQ 479
Query: 535 SGEIPLLFSNISFLYILDMSNNSLSGSTPESIGSLRTVKFLVLRNNYLSGKLPLSLK 591
L +SN+ L +++ N P+ + L ++ L + N L
Sbjct: 480 YENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKAD 536
|
| >4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876 | Back alignment and structure |
|---|
Score = 63.0 bits (153), Expect = 2e-10
Identities = 25/178 (14%), Positives = 48/178 (26%), Gaps = 28/178 (15%)
Query: 100 ELGGEISPSLLQLKDLEYLDLSMNNFTGFQVPEFIGSLKELRYLNLSGSFFSGTIPQTLG 159
+ L +DL N T +L L +++S + FS + P
Sbjct: 715 NSLKPKDGNYKNTYLLTTIDLRFNKLTSLSDDFRATTLPYLSNMDVSYNCFS-SFPTQPL 773
Query: 160 NLSNLLYLDLNNFLDQSNQIDLEWLSGLSSLVYFNLGGADLSKAGAYWLEVFNKLHSFVE 219
N S L + + D L S ++
Sbjct: 774 NSSQLKAFGIRHQRDAEGNRILRQWP-----------------------TGITTCPSLIQ 810
Query: 220 LHLPNCNLPSLPLSFPSLNFASLQVLDLSNNDFNSTTPHWLFNITSLLCLDLGSNDLQ 277
L + + ++ + L +LD+++N S + L + Q
Sbjct: 811 LQIGSNDIRKVDEKLTP----QLYILDIADNPNISIDVTSVCPYIEAGMYVLLYDKTQ 864
|
| >3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606 | Back alignment and structure |
|---|
Score = 179 bits (455), Expect = 5e-49
Identities = 102/506 (20%), Positives = 194/506 (38%), Gaps = 37/506 (7%)
Query: 100 ELGGEISPSLLQLKDLEYLDLSMNNFTGFQVPEFIGSLKELRYLNLSGSFFSGTIPQTLG 159
++ + L+ L L+ N + K L++L + S L
Sbjct: 68 QIYWIHEDTFQSQHRLDTLVLTANPLIFMA-ETALSGPKALKHLFFIQTGISSIDFIPLH 126
Query: 160 NLSNLLYLDL-NNFLDQSNQIDLEWLSGLSSLVYFNLGGADLSKAGAYWLEVFNKLHSFV 218
N L L L +N + + I L L + + + + + +
Sbjct: 127 NQKTLESLYLGSNHI---SSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQA-TNL 182
Query: 219 ELHLPNCNLPSLPLSFPSLNFASLQVLDLSNNDFNSTTPHWLFN--ITSLLCLDLGSNDL 276
L+L ++ + + + A Q L+ L N I SL D
Sbjct: 183 SLNLNGNDIAGIEPG--AFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDD 240
Query: 277 QGDIPDGFASL--NSLQELDLSGNSFLGGQLSRNLGKLCNLRTMILSRNNISSEVSDFLD 334
+ P F L S++ ++L + S L+ + L+ ++S + L
Sbjct: 241 EDISPAVFEGLCEMSVESINLQKHY-FFNISSNTFHCFSGLQELDLTATHLSE-LPSGLV 298
Query: 335 GLSECTNSILLEKLELRFNQFTGILPISLGSLKNLRHLVLWQNSFLGSIPP-SIGNLTLL 393
GLS L+KL L N+F + IS + +L HL + N+ + + NL L
Sbjct: 299 GLST------LKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENL 352
Query: 394 KELYLASNQMNGQKISDSYQHLKNQTELRTLVLNKARISDTISDWFWQLSLTLDELDVAY 453
+EL L+ + + + L+N + L++L L+ ++ F + L+ LD+A+
Sbjct: 353 RELDLSHDDI--ETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECP-QLELLDLAF 409
Query: 454 NELRGRVPNSLGFNFPA--KVDLSFNNFEG---RLLLWSFNVTKLYLRDNSFSGLIPNDI 508
L+ + S N ++LS + + +L + L L+ N F
Sbjct: 410 TRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKT 469
Query: 509 GQNLPFLTDLGNLKQLITLVISNNNLSGEIPLLFSNISFLYILDMSNNSLSGSTPESIGS 568
L L +L LV+S +LS F+++ + +D+S+N L+ S+ E++
Sbjct: 470 NS-------LQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSH 522
Query: 569 LRTVKFLVLRNNYLSGKLPLSLKNCT 594
L+ + +L L +N++S LP L +
Sbjct: 523 LKGI-YLNLASNHISIILPSLLPILS 547
|
| >3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606 | Back alignment and structure |
|---|
Score = 140 bits (356), Expect = 1e-35
Identities = 92/494 (18%), Positives = 166/494 (33%), Gaps = 41/494 (8%)
Query: 101 LGGEISPSLLQLKDLEYLDLSMNNFTGFQVPEFIGSLKELRYLNLSGSF-FSGTIPQTLG 159
+ P + L+ LD N + SL++ L+L+ + I
Sbjct: 141 ISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDM-SSLQQATNLSLNLNGNDIAGIEPGAF 199
Query: 160 NLSNLLYLDLNNFLDQSNQIDLEWLSGLSSLVYFNLGGADLSKAGAYWLEVFNKLHSFVE 219
+ + L+ + S + SL D E ++ S
Sbjct: 200 DSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEM-SVES 258
Query: 220 LHLPNCNLPSLPLSFPSLNFASLQVLDLSNNDFNSTTPHWLFNITSLLCLDLGSNDLQGD 279
++L ++ + F+ LQ LDL+ + P L +++L L L +N +
Sbjct: 259 INLQKHYFFNISSNTFH-CFSGLQELDLTATHLSEL-PSGLVGLSTLKKLVLSANKFENL 316
Query: 280 IPDGFASLNSLQELDLSGNSFLGGQLSRNLGKLCNLRTMILSRNNISS--EVSDFLDGLS 337
++ SL L + GN+ + L L NLR + LS ++I + + L LS
Sbjct: 317 CQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLS 376
Query: 338 ECTNSILLEKLELRFNQFTGILPISLGSLKNLRHLVLWQNSFLGSIPPSI-GNLTLLKEL 396
L+ L L +N+ + + L L L S NL LLK L
Sbjct: 377 H------LQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVL 430
Query: 397 YLASNQMNGQKISDSYQHLKNQTELRTLVLNKARISDTI---SDWFWQLSLTLDELDVAY 453
L+ + ++ + L L+ L L ++ L L+ L +++
Sbjct: 431 NLSHSLLDI-SSEQLFDGLPA---LQHLNLQGNHFPKGNIQKTNSLQTLG-RLEILVLSF 485
Query: 454 NELRGRVPNSLGFNFPA--KVDLSFNNFEG--RLLLWSFNVTKLYLRDNSFSGLIPNDIG 509
+L ++ + VDLS N L L L N S ++P+
Sbjct: 486 CDLSSIDQHAFT-SLKMMNHVDLSHNRLTSSSIEALSHLKGIYLNLASNHISIILPSL-- 542
Query: 510 QNLPFLTDLGNLKQLITLVISNNNLSGEIPLLFSNISFLYILDMSNNSLSGSTPESIGSL 569
L L Q T+ + N L ++ FL + L + +
Sbjct: 543 --------LPILSQQRTINLRQNPLDCTCSNIY----FLEWYKENMQKLEDTEDTLCENP 590
Query: 570 RTVKFLVLRNNYLS 583
++ + L + LS
Sbjct: 591 PLLRGVRLSDVTLS 604
|
| >3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606 | Back alignment and structure |
|---|
Score = 137 bits (347), Expect = 2e-34
Identities = 71/403 (17%), Positives = 125/403 (31%), Gaps = 45/403 (11%)
Query: 219 ELHLPNCNLPSLPLSFPSLNFASLQVLDLSNNDFNSTTPHWLFNITSLLCLDLGSNDLQG 278
+ N L +P + P+ S + L+ S N + + +L LDL +
Sbjct: 16 TYNCENLGLNEIPGTLPN----STECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYW 71
Query: 279 DIPDGFASLNSLQELDLSGNSFLGGQLSRNLGKLCNLRTMILSRNNISSEVSDFLDGLS- 337
D F S + L L L+ N L L L+ + + ISS L
Sbjct: 72 IHEDTFQSQHRLDTLVLTANP-LIFMAETALSGPKALKHLFFIQTGISSIDFIPLHNQKT 130
Query: 338 -----------------ECTNSILLEKLELRFNQFTGILPISLGSLKNLRHLVLWQNS-F 379
+ + L+ L+ + N + + SL+ +L L N
Sbjct: 131 LESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGND 190
Query: 380 LGSIPPSIGNLTLLKELYLASNQMNGQKISDSYQHLKNQTELRTLVLNKARISDTISDWF 439
+ I P + + + L Q L D F
Sbjct: 191 IAGIEPGAFDSAVFQSLNFGGTQNLLVIFKGL--KNSTIQSLWLGTFEDMDDEDISPAVF 248
Query: 440 WQLS-LTLDELDVAYNELRGRVPNSLGFNFPA--KVDLSFNNFEG--RLLLWSFNVTKLY 494
L ++++ +++ + N+ F ++DL+ + L+ + KL
Sbjct: 249 EGLCEMSVESINLQKHYFFNISSNTFH-CFSGLQELDLTATHLSELPSGLVGLSTLKKLV 307
Query: 495 LRDNSFSGLIPNDIGQNLPFLTDLGNLKQLITLVISNNNLSGEI-PLLFSNISFLYILDM 553
L N F L N L L I N E+ N+ L LD+
Sbjct: 308 LSANKFENLCQI----------SASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDL 357
Query: 554 SNNSL--SGSTPESIGSLRTVKFLVLRNNYLSGKLPLSLKNCT 594
S++ + S + +L ++ L L N + K C
Sbjct: 358 SHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECP 400
|
| >1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313 | Back alignment and structure |
|---|
Score = 160 bits (406), Expect = 1e-44
Identities = 94/372 (25%), Positives = 149/372 (40%), Gaps = 85/372 (22%)
Query: 32 CQEAERKALLQFKQSLRDPSGQLSSWVGE-DCC--SWSGVSCNNRT--ASVIKLNLNN-- 84
C +++ALLQ K+ L +P+ LSSW+ DCC +W GV C+ T V L+L+
Sbjct: 3 CNPQDKQALLQIKKDLGNPT-TLSSWLPTTDCCNRTWLGVLCDTDTQTYRVNNLDLSGLN 61
Query: 85 -----PFRDSFGSFE-----DDAGH-ELGGEISPSLLQLKDLEYLDLSMNNFTGFQVPEF 133
P S + G L G I P++ +L L YL ++ N +G +P+F
Sbjct: 62 LPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSG-AIPDF 120
Query: 134 IGSLKELRYLNLSGSFFSGTIPQTLGNLSNLLYLDLNNFLDQSNQIDLEWLSGLSSLVYF 193
+ +K L L+ S + SGT+P ++ +L NL+ + + N+ +SG
Sbjct: 121 LSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDG-----NR-----ISG------- 163
Query: 194 NLGGADLSKAGAYWLEVFNKLHSFVELHLPNCNLPSLPLSFPSLNFASL-QVLDLSNNDF 252
++P S+ +F+ L + +S N
Sbjct: 164 -----------------------------------AIPDSY--GSFSKLFTSMTISRNRL 186
Query: 253 NSTTPHWLFNITSLLCLDLGSNDLQGDIPDGFASLNSLQELDLSGNSFLGGQLSRNLGKL 312
P N+ +L +DL N L+GD F S + Q++ L+ NS L L +G
Sbjct: 187 TGKIPPTFANL-NLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNS-LAFDLG-KVGLS 243
Query: 313 CNLRTMILSRNNISSEVSDFLDGLSECTNSILLEKLELRFNQFTGILPISLGSLKNLRHL 372
NL + L N I + L T L L + FN G +P G+L+
Sbjct: 244 KNLNGLDLRNNRIYGTLPQGL------TQLKFLHSLNVSFNNLCGEIP-QGGNLQRFDVS 296
Query: 373 VLWQNSFLGSIP 384
N L P
Sbjct: 297 AYANNKCLCGSP 308
|
| >1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313 | Back alignment and structure |
|---|
Score = 157 bits (399), Expect = 1e-43
Identities = 77/352 (21%), Positives = 125/352 (35%), Gaps = 71/352 (20%)
Query: 245 LDLSNNDFNSTTPHWLFNITSLLCLDLGSNDLQG--DIPDGFASLNSLQELDLSGNSFLG 302
D N + + LDL +L IP A+L L L + G + L
Sbjct: 31 TDCCNRTWLGVLCDTDTQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLV 90
Query: 303 GQLSRNLGKLCNLRTMILSRNNISSEVSDFLDGLSECTNSILLEKLELRFNQFTGILPIS 362
G + + KL L + ++ N +G +P
Sbjct: 91 GPIPPAIAKLTQLHYLYITHTN------------------------------VSGAIPDF 120
Query: 363 LGSLKNLRHLVLWQNSFLGSIPPSIGNLTLLKELYLASNQMNGQKISDSYQHLKNQTELR 422
L +K L L N+ G++PPSI +L L + N+++G I DSY
Sbjct: 121 LSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGA-IPDSYGSFSKL--FT 177
Query: 423 TLVLNKARISDTISDWFWQLSLTLDELDVAYNELRGRVPNSLGFNFPAKVDLSFNNFEGR 482
++ +++ R++ I F L+L +D++ N L G G
Sbjct: 178 SMTISRNRLTGKIPPTFANLNLA--FVDLSRNMLEGDASVLFG-------SDK------- 221
Query: 483 LLLWSFNVTKLYLRDNSFSGLIPNDIGQNLPFLTDLGNLKQLITLVISNNNLSGEIPLLF 542
N K++L NS + + +G K L L + NN + G +P
Sbjct: 222 ------NTQKIHLAKNSLAFDLG-----------KVGLSKNLNGLDLRNNRIYGTLPQGL 264
Query: 543 SNISFLYILDMSNNSLSGSTPESIGSLRTVKFLVLRNNYLSGKLPLSLKNCT 594
+ + FL+ L++S N+L G P+ R N L G L CT
Sbjct: 265 TQLKFLHSLNVSFNNLCGEIPQGGNLQRFDVSAYANNKCLCGS---PLPACT 313
|
| >1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313 | Back alignment and structure |
|---|
Score = 139 bits (353), Expect = 3e-37
Identities = 62/328 (18%), Positives = 104/328 (31%), Gaps = 90/328 (27%)
Query: 269 LDLGSNDLQGDIPDGFASLNSLQELDLSGNSFLG-GQLSRNLGKLCNLRTMILSRNNISS 327
D + G + D + LDLSG + + +L L L + + N
Sbjct: 31 TDCCNRTWLGVLCDTDTQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGIN--- 87
Query: 328 EVSDFLDGLSECTNSILLEKLELRFNQFTGILPISLGSLKNLRHLVLWQNSFLGSIPPSI 387
G +P ++ L L +L + + G+IP +
Sbjct: 88 --------------------------NLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFL 121
Query: 388 GNLTLLKELYLASNQMNGQKISDSYQHLKNQTELRTLVLNKARISDTISDWFWQLSLTLD 447
+ L L + N ++G + S L N L
Sbjct: 122 SQIKTLVTLDFSYNALSGT-LPPSISSLPN----------------------------LV 152
Query: 448 ELDVAYNELRGRVPNSLGFNFPAKVDLSFNNFEGRLLLWSFNVTKLYLRDNSFSGLIPND 507
+ N + G +P+S G +F T + + N +G IP
Sbjct: 153 GITFDGNRISGAIPDSYG-SFSK------------------LFTSMTISRNRLTGKIPPT 193
Query: 508 IGQNLPFLTDLGNLKQLITLVISNNNLSGEIPLLFSNISFLYILDMSNNSLSGSTPESIG 567
NL L + +S N L G+ +LF + + ++ NSL+ +G
Sbjct: 194 FA----------NLN-LAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLG-KVG 241
Query: 568 SLRTVKFLVLRNNYLSGKLPLSLKNCTF 595
+ + L LRNN + G LP L F
Sbjct: 242 LSKNLNGLDLRNNRIYGTLPQGLTQLKF 269
|
| >1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313 | Back alignment and structure |
|---|
Score = 125 bits (317), Expect = 3e-32
Identities = 69/338 (20%), Positives = 117/338 (34%), Gaps = 68/338 (20%)
Query: 143 LNLSGSFFSGTIPQTLGNLSNLLYLDL-NNFLDQSNQIDLEWLSGLSSLVYFNLGGADLS 201
+ + G + T + LDL L + I L+ L L + +GG
Sbjct: 31 TDCCNRTWLGVLCDTDTQTYRVNNLDLSGLNLPKPYPIPSS-LANLPYLNFLYIGG---- 85
Query: 202 KAGAYWLEVFNKLHSFVELHLPNCNLPSLPLSFPSLNFASLQVLDLSNNDFNSTTPHWLF 261
N L +P + L L L +++ + + P +L
Sbjct: 86 ---------INNLVG------------PIPPAIAKLT--QLHYLYITHTNVSGAIPDFLS 122
Query: 262 NITSLLCLDLGSNDLQGDIPDGFASLNSLQELDLSGNSFLGGQLSRNLGKLCNLRT-MIL 320
I +L+ LD N L G +P +SL +L + GN + G + + G L T M +
Sbjct: 123 QIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNR-ISGAIPDSYGSFSKLFTSMTI 181
Query: 321 SRNNISSEVSDFLDGLSECTNSILLEKLELRFNQFTGILPISLGSLKNLRHLVLWQNSFL 380
SRN ++ ++ L+ L ++L N G + GS KN + + L +NS
Sbjct: 182 SRNRLTGKIPPTFANLN-------LAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLA 234
Query: 381 GSIPPSIGNLTLLKELYLASNQMNGQKISDSYQHLKNQTELRTLVLNKARISDTISDWFW 440
+ +G L L L +N++ G + LK
Sbjct: 235 FDL-GKVGLSKNLNGLDLRNNRIYGT-LPQGLTQLKF----------------------- 269
Query: 441 QLSLTLDELDVAYNELRGRVPNSLGFNFPAKVDLSFNN 478
L L+V++N L G +P + N
Sbjct: 270 -----LHSLNVSFNNLCGEIPQGGNLQRFDVSAYANNK 302
|
| >1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313 | Back alignment and structure |
|---|
Score = 95.3 bits (238), Expect = 9e-22
Identities = 49/242 (20%), Positives = 81/242 (33%), Gaps = 66/242 (27%)
Query: 365 SLKNLRHLVLW-------QNSFLGSIPPSIGNLTLLKELYLASNQMNGQ-KISDSYQHLK 416
L N L W ++LG + + + L L+ + I S +L
Sbjct: 17 DLGNPTTLSSWLPTTDCCNRTWLGVLCDTDTQTYRVNNLDLSGLNLPKPYPIPSSLANLP 76
Query: 417 NQTELRTLVLNKARISDTISDWFWQLSLTLDELDVAYNELRGRVPNSLGFNFPAKVDLSF 476
L L + N L G +P ++ L+
Sbjct: 77 Y---LNFLYIGG------------------------INNLVGPIPPAIA-------KLT- 101
Query: 477 NNFEGRLLLWSFNVTKLYLRDNSFSGLIPNDIGQNLPFLTDLGNLKQLITLVISNNNLSG 536
+ LY+ + SG IP+ + +K L+TL S N LSG
Sbjct: 102 ------------QLHYLYITHTNVSGAIPDFLS----------QIKTLVTLDFSYNALSG 139
Query: 537 EIPLLFSNISFLYILDMSNNSLSGSTPESIGSLRT-VKFLVLRNNYLSGKLPLSLKNCTF 595
+P S++ L + N +SG+ P+S GS + + N L+GK+P + N
Sbjct: 140 TLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLNL 199
Query: 596 QE 597
Sbjct: 200 AF 201
|
| >3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606 | Back alignment and structure |
|---|
Score = 161 bits (409), Expect = 9e-43
Identities = 96/523 (18%), Positives = 163/523 (31%), Gaps = 58/523 (11%)
Query: 105 ISPSLLQLKDLEYLDLSMNNFTGFQVPEFIGSLKELRYLNLSGSFFSGTIPQTLGNLSNL 164
S S +L++LDLS + + L L L L+G+ P + L++L
Sbjct: 48 KSYSFSNFSELQWLDLSRCEIETIE-DKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSL 106
Query: 165 LYLDL-NNFLDQSNQIDLEWLSGLSSLVYFNLGGADLSKAGAYWLEVFNKLHSFVELHLP 223
L L ++ + L +L N+ + F+ L + V + L
Sbjct: 107 ENLVAVETKL---ASLESFPIGQLITLKKLNVAHNFIHSCKL--PAYFSNLTNLVHVDLS 161
Query: 224 NCNLPSLP---LSFPSLNFASLQVLDLSNNDFNSTTPHWLFNITSLLCLDLGSNDLQGDI 280
+ ++ L F N LD+S N F L L L N +I
Sbjct: 162 YNYIQTITVNDLQFLRENPQVNLSLDMSLNPI-DFIQDQAFQGIKLHELTLRGNFNSSNI 220
Query: 281 PDG-FASLNSLQELDLSGNSFLGGQLSRN-----LGKLCNLRTMIL--SRNNISSEVSDF 332
+L L L F + + LC++ + N S+
Sbjct: 221 MKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVK 280
Query: 333 LDGLS----------------ECTNSILLEKLELRFNQFTGILPISLGSLKNLRHLVLWQ 376
L+ + + L + Q L L+ L L
Sbjct: 281 FHCLANVSAMSLAGVSIKYLEDVPKHFKWQSLSIIRCQLKQF---PTLDLPFLKSLTLTM 337
Query: 377 NSFLGSIPPSIGNLTLLKELYLASNQMNGQKISDSYQHLKNQTELRTLVLNKARISDTIS 436
N GSI L L L L+ N ++ LR L L+ +S
Sbjct: 338 NK--GSISFKKVALPSLSYLDLSRNALS--FSGCCSYSDLGTNSLRHLDLSFNGAI-IMS 392
Query: 437 DWFWQLSLTLDELDVAYNELRGRVPNSLGFNFPA--KVDLSFNNFEG---RLLLWSFNVT 491
F L L LD ++ L+ S + +D+S+ N + + L ++
Sbjct: 393 ANFMGLE-ELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLN 451
Query: 492 KLYLRDNSFSGLIPNDIGQNLPFLTDLGNLKQLITLVISNNNLSGEIPLLFSNISFLYIL 551
L + NSF +++ N L L +S L +F + L +L
Sbjct: 452 TLKMAGNSFKDNTLSNV---------FANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLL 502
Query: 552 DMSNNSLSGSTPESIGSLRTVKFLVLRNNYLSGKLPLSLKNCT 594
+MS+N+L L ++ L N + +
Sbjct: 503 NMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIETSKGILQHFPK 545
|
| >3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606 | Back alignment and structure |
|---|
Score = 155 bits (394), Expect = 1e-40
Identities = 96/511 (18%), Positives = 162/511 (31%), Gaps = 52/511 (10%)
Query: 100 ELGGEISPSLLQLKDLEYLDLSMNNFTGFQVPEFIGSLKELRYLNLSGSFFSGTIPQTLG 159
E+ + L L L L+ N F P L L L + + +G
Sbjct: 67 EIETIEDKAWHGLHHLSNLILTGNPIQSFS-PGSFSGLTSLENLVAVETKLASLESFPIG 125
Query: 160 NLSNLLYLDL-NNFLDQSNQIDLEWLSGLSSLVYFNLGGADLSKAGAYWLEVFNKL-HSF 217
L L L++ +NF+ S L++LV+ +L + L+ +
Sbjct: 126 QLITLKKLNVAHNFIHSCKLPAY--FSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVN 183
Query: 218 VELHLPNCNLPSLPLSFPSLNFASLQVLDLSNNDFNSTTPHWLF-NITSLLCLDLGSNDL 276
+ L + + + + L L L N +S N+ L L +
Sbjct: 184 LSLDMSLNPIDFIQDQ--AFQGIKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEF 241
Query: 277 QGDI------PDGFASLNSLQELDLSGNSFLGGQLSRN-LGKLCNLRTMILSRNNISSEV 329
+ + P L + + L N+ M L+ +I
Sbjct: 242 KDERNLEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVKFHCLANVSAMSLAGVSIKY-- 299
Query: 330 SDFLDGLSECTNSILLEKLELRFNQFTGILPISLGSLKNLRHLVLWQNSFLGSIPPSIGN 389
L + + L + Q L L+ L L N GSI
Sbjct: 300 ------LEDVPKHFKWQSLSIIRCQLKQF---PTLDLPFLKSLTLTMNK--GSISFKKVA 348
Query: 390 LTLLKELYLASNQMNGQKISDSYQHLKNQTELRTLVLNKARISDTISDWFWQLSLTLDEL 449
L L L L+ N ++ LR L L+ +S F L L L
Sbjct: 349 LPSLSYLDLSRNALS--FSGCCSYSDLGTNSLRHLDLSFNGAI-IMSANFMGLE-ELQHL 404
Query: 450 DVAYNELRGRVPNSLGFNFPA--KVDLSFNNFEG---RLLLWSFNVTKLYLRDNSFSGLI 504
D ++ L+ S + +D+S+ N + + L ++ L + NSF
Sbjct: 405 DFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNT 464
Query: 505 PNDIGQNLPFLTDL---------------GNLKQLITLVISNNNLSGEIPLLFSNISFLY 549
+++ N LT L L +L L +S+NNL ++ + L
Sbjct: 465 LSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLS 524
Query: 550 ILDMSNNSLSGSTPESIGSLRTVKFLVLRNN 580
LD S N + S +++ F L NN
Sbjct: 525 TLDCSFNRIETSKGILQHFPKSLAFFNLTNN 555
|
| >3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606 | Back alignment and structure |
|---|
Score = 127 bits (321), Expect = 4e-31
Identities = 85/465 (18%), Positives = 141/465 (30%), Gaps = 110/465 (23%)
Query: 104 EISPSLLQLKDLEYLDLSMNNFTGFQVPEFIGSLKELRYLNLSGSFFSGTI------PQT 157
I Q L L L N + + + +L L L F P
Sbjct: 195 FIQDQAFQGIKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSI 254
Query: 158 LGNLSNLLYLDLNNFLDQSNQIDLEWLSGLSSLVYFNLGGADLSKAGAYWLEVFNKLHSF 217
+ L ++ + D+ L+++ +L G + LE K +
Sbjct: 255 MEGLCDVTIDEFRLTYTNDFSDDIVKFHCLANVSAMSLAGVSIKY-----LEDVPKHFKW 309
Query: 218 VELHLPNCNLPSLPLSFPSLNFASLQVLDLSNNDFNSTTPHWLFNITSLLCLDLGSNDLQ 277
L + C L FP+L+ L+ L L+ N +
Sbjct: 310 QSLSIIRCQL----KQFPTLDLPFLKSLTLTMN--------------------------K 339
Query: 278 GDIPDGFASLNSLQELDLSGN--SFLGGQLSRNLGKLCNLRTMILSRNNISSEVSDFLDG 335
G I +L SL LDLS N SF G +LG +LR + LS N ++F+
Sbjct: 340 GSISFKKVALPSLSYLDLSRNALSFSGCCSYSDLG-TNSLRHLDLSFNGAIIMSANFM-- 396
Query: 336 LSECTNSILLEKLELRFNQFTGILPIS-LGSLKNLRHLVLWQNSFLGSIPPSIGNLTLLK 394
L+ L+ + + + S SL+ L +L + + LT L
Sbjct: 397 -----GLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLN 451
Query: 395 ELYLASNQMNGQKISDSYQHLKNQTELRTLVLNKARISDTISDWFWQLSLTLDELDVAYN 454
L +A N +S+ + + N L L L+K ++ F L
Sbjct: 452 TLKMAGNSFKDNTLSNVFANTTN---LTFLDLSKCQLEQISWGVFDTLH----------- 497
Query: 455 ELRGRVPNSLGFNFPAKVDLSFNNFEGRLLLWSFNVTKLYLRDNSFSGLIPNDIGQNLPF 514
+ L + N+ L +
Sbjct: 498 ----------------------------------RLQLLNMSHNNLLFLDSSH------- 516
Query: 515 LTDLGNLKQLITLVISNNNLSGEIPLLFSNISFLYILDMSNNSLS 559
L L TL S N + +L L +++NNS++
Sbjct: 517 ---YNQLYSLSTLDCSFNRIETSKGILQHFPKSLAFFNLTNNSVA 558
|
| >3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606 | Back alignment and structure |
|---|
Score = 119 bits (301), Expect = 1e-28
Identities = 64/336 (19%), Positives = 101/336 (30%), Gaps = 26/336 (7%)
Query: 71 NNRTASVIKLNLNNPFRDSFGSFEDDAGHELGGEISPSLLQLKDLEYLDLSMNNFTGFQV 130
+ R + + ++ D + L ++ + L+ + +
Sbjct: 243 DERNLEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVKFHCLANVSAMSLAGVSIKYLED 302
Query: 131 PEFIGSLKELRYLNLSGSFFSGTIPQTLGNLSNLLYLDLNNFLDQSNQID-LEWLSGLSS 189
+ L + F +L L L L N+ L S
Sbjct: 303 VPKHFKWQSLSIIRCQLKQFPT------LDLPFLKSLTLTM-----NKGSISFKKVALPS 351
Query: 190 LVYFNLGGADLSK--AGAYWLEVFNKLHSFVELHLPNCNLPSLPLSFPSLNFASLQVLDL 247
L Y +L LS +Y N L L L + +F L LQ LD
Sbjct: 352 LSYLDLSRNALSFSGCCSYSDLGTNSLR---HLDLSFNGAIIMSANFMGLE--ELQHLDF 406
Query: 248 SNNDFNSTTPHWLF-NITSLLCLDLGSNDLQGDIPDGFASLNSLQELDLSGNSFLGGQLS 306
++ T F ++ LL LD+ + + D F L SL L ++GNSF LS
Sbjct: 407 QHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLS 466
Query: 307 RNLGKLCNLRTMILSRNNISSEVSDFLDGLSECTNSILLEKLELRFNQFTGILPISLGSL 366
NL + LS+ + D L L+ L + N + L
Sbjct: 467 NVFANTTNLTFLDLSKCQLEQISWGVFDTLHR------LQLLNMSHNNLLFLDSSHYNQL 520
Query: 367 KNLRHLVLWQNSFLGSIPPSIGNLTLLKELYLASNQ 402
+L L N S L L +N
Sbjct: 521 YSLSTLDCSFNRIETSKGILQHFPKSLAFFNLTNNS 556
|
| >3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606 | Back alignment and structure |
|---|
Score = 89.3 bits (222), Expect = 7e-19
Identities = 50/227 (22%), Positives = 83/227 (36%), Gaps = 9/227 (3%)
Query: 103 GEISPSLLQLKDLEYLDLSMNNFTGFQVPEFIG-SLKELRYLNLSGSFFSGTIPQTLGNL 161
G IS + L L YLDLS N + + LR+L+LS + + L
Sbjct: 340 GSISFKKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAI-IMSANFMGL 398
Query: 162 SNLLYLDL-NNFLDQSNQIDLEWLSGLSSLVYFNLGGADLSKAGAYWLEVFNKLHSFVEL 220
L +LD ++ L + + L L+Y ++ + + +F L S L
Sbjct: 399 EELQHLDFQHSTLKRVTEFSA--FLSLEKLLYLDISYTNTKID---FDGIFLGLTSLNTL 453
Query: 221 HLPNCNLPSLPLSFPSLNFASLQVLDLSNNDFNSTTPHWLFNITSLLCLDLGSNDLQGDI 280
+ + LS N +L LDLS + + L L++ N+L
Sbjct: 454 KMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLD 513
Query: 281 PDGFASLNSLQELDLSGNSFLGGQLSRNLGKLCNLRTMILSRNNISS 327
+ L SL LD S N + +L L+ N+++
Sbjct: 514 SSHYNQLYSLSTLDCSFNR-IETSKGILQHFPKSLAFFNLTNNSVAC 559
|
| >3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606 | Back alignment and structure |
|---|
Score = 82.0 bits (203), Expect = 1e-16
Identities = 46/265 (17%), Positives = 82/265 (30%), Gaps = 29/265 (10%)
Query: 345 LEKLELRFNQFTGILPISLGSLKNLRHLVLWQNSFLGSIPPSIGNLTLLKELYLASNQMN 404
+ ++L FN + S + L+ L L + + L L L L N +
Sbjct: 34 TKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQ 93
Query: 405 GQKISDSYQHLKNQTELRTLVLNKARISDTISDWFWQLSLTLDELDVAYNELRGRVPNSL 464
S+ L + L LV + +++ S QL TL +L+VA+N + +
Sbjct: 94 SF-SPGSFSGLTS---LENLVAVETKLASLESFPIGQLI-TLKKLNVAHNFIHSCKLPAY 148
Query: 465 GFNFPA--KVDLSFNNFEG-------RLLLWSFNVTKLYLRDNSFSGLIPNDIGQNLPFL 515
N VDLS+N + L L + N +
Sbjct: 149 FSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMSLNPIDFIQDQ--------- 199
Query: 516 TDLGNLKQLITLVISNNNLSGEIP-LLFSNISFLYILDMSNNSLSGSTPESI---GSLRT 571
+L L + N S I N++ L++ + I +
Sbjct: 200 --AFQGIKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEG 257
Query: 572 VKFLVLRNNYLSGKLPLSLKNCTFQ 596
+ + + L+ S F
Sbjct: 258 LCDVTIDEFRLTYTNDFSDDIVKFH 282
|
| >3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606 | Back alignment and structure |
|---|
Score = 57.3 bits (139), Expect = 9e-09
Identities = 16/106 (15%), Positives = 32/106 (30%), Gaps = 10/106 (9%)
Query: 489 NVTKLYLRDNSFSGLIPNDIGQNLPFLTDLGNLKQLITLVISNNNLSGEIPLLFSNISFL 548
+ + L N L N +L L +S + + + L
Sbjct: 33 STKNIDLSFNPLKILKSYS----------FSNFSELQWLDLSRCEIETIEDKAWHGLHHL 82
Query: 549 YILDMSNNSLSGSTPESIGSLRTVKFLVLRNNYLSGKLPLSLKNCT 594
L ++ N + +P S L +++ LV L+ +
Sbjct: 83 SNLILTGNPIQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLI 128
|
| >3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844 | Back alignment and structure |
|---|
Score = 156 bits (397), Expect = 2e-40
Identities = 107/515 (20%), Positives = 175/515 (33%), Gaps = 63/515 (12%)
Query: 112 LKDLEYLDLSMNNFTGFQVPEFIGSLKELRYLNLSGSFFSGTI-PQTLGNLSNLLYLDL- 169
L E L LS N F L++L+ L L + TI + NL NL LDL
Sbjct: 23 LNTTERLLLSFNYIRTVTASSFPF-LEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLG 81
Query: 170 NNFLDQSNQIDLEWLSGLSSLVYFNLGGADLSKAGAYWLEVFNKLHSFVELHLPNCNLPS 229
++ + + + GL L L LS A F L + L L + S
Sbjct: 82 SSKI---YFLHPDAFQGLFHLFELRLYFCGLSDAVLKD-GYFRNLKALTRLDLSKNQIRS 137
Query: 230 LPLSFPSLNFASLQVLDLSNNDFNSTTPHWLFNIT--SLLCLDLGSNDLQGDIPDGFASL 287
L L SL+ +D S+N H L + +L L +N L + +
Sbjct: 138 LYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAANSLYSRVSVDWGKC 197
Query: 288 N------SLQELDLSGNSF-----------LGGQLSRNLGKLCNLRTMILSRNNISSEVS 330
L+ LD+SGN + + + +L ++ +NI
Sbjct: 198 MNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQ 257
Query: 331 DFLDGLSECTNSILLEKLELRFNQFTGILPISLGSLKNLRHLVLWQNSFLGSIPPSI-GN 389
+ GL+ + + L+L + +LK+L+ L L N + I
Sbjct: 258 NTFAGLARSS----VRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNK-INKIADEAFYG 312
Query: 390 LTLLKELYLASNQMNGQKISDSYQHLKNQTELRTLVLNKARISDTISDWFWQLSLTLDEL 449
L L+ L L+ N + ++ S + ++ + L K I+ F L L L
Sbjct: 313 LDNLQVLNLSYNLL--GELYSS--NFYGLPKVAYIDLQKNHIAIIQDQTFKFLE-KLQTL 367
Query: 450 DVAYNELRGRVPNSLGFNFPAKVDLSFNNFEGRLLLWSFNVTKLYLRDNSFSGLIPNDIG 509
D+ N L + LS N L + ++L +N L
Sbjct: 368 DLRDNALT----TIHFIPSIPDIFLSGNKLV-TLPKINLTANLIHLSENRLENLDILYFL 422
Query: 510 QNLPFLTDL----------------GNLKQLITLVISNNNLSGEI-----PLLFSNISFL 548
+P L L L L + N L +F +S L
Sbjct: 423 LRVPHLQILILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQLAWETELCWDVFEGLSHL 482
Query: 549 YILDMSNNSLSGSTPESIGSLRTVKFLVLRNNYLS 583
+L +++N L+ P L ++ L L +N L+
Sbjct: 483 QVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRLT 517
|
| >3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844 | Back alignment and structure |
|---|
Score = 140 bits (354), Expect = 5e-35
Identities = 90/530 (16%), Positives = 179/530 (33%), Gaps = 69/530 (13%)
Query: 98 GHELGGEISPSLLQ-LKDLEYLDLSMNNFTGFQVPEFIGSLKELRYLNLSGSFFSGTI-- 154
I + L +L LDL + F G L L L L S +
Sbjct: 57 SQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQG-LFHLFELRLYFCGLSDAVLK 115
Query: 155 PQTLGNLSNLLYLDL-NNFLDQSNQIDLEWLSGLSSLVYFNLGGADLSKAGAYWLEVFNK 213
NL L LDL N + L+SL + +
Sbjct: 116 DGYFRNLKALTRLDLSKNQIRSLYLHPS--FGKLNSLKSIDFSSNQIFLVCE---HELEP 170
Query: 214 LH--SFVELHLPNCNLPSLP-----LSFPSLNFASLQVLDLSNNDFN------------S 254
L + L +L S L++LD+S N +
Sbjct: 171 LQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISK 230
Query: 255 TTPHWLFNITSLLCLDLGSNDLQGDIPDGFASL--NSLQELDLSGN--SFLGGQLSRNLG 310
+ L ++ G ++++ + FA L +S++ LDLS L ++ L
Sbjct: 231 SQAFSLILAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLK 290
Query: 311 KLCNLRTMILSRNNISSEVSDFLDGLSECTNSILLEKLELRFNQFTGILPISLGSLKNLR 370
+L+ + L+ N I+ + GL L+ L L +N + + L +
Sbjct: 291 ---DLKVLNLAYNKINKIADEAFYGLDN------LQVLNLSYNLLGELYSSNFYGLPKVA 341
Query: 371 HLVLWQNSFLGSIPPSIGNLTLLKELYLASNQMNGQKISDSYQHLKNQTELRTLVLNKAR 430
++ L +N + L L+ L L N + + + + L+ +
Sbjct: 342 YIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALT---------TIHFIPSIPDIFLSGNK 392
Query: 431 ISDTISDWFWQLSLTLDELDVAYNELRGRVPNSLGFNFPA--KVDLSFNNFEG----RLL 484
+ +++LT + + ++ N L P + L+ N F +
Sbjct: 393 LVT-----LPKINLTANLIHLSENRLENLDILYFLLRVPHLQILILNQNRFSSCSGDQTP 447
Query: 485 LWSFNVTKLYLRDNSFSGLIPNDIGQNLPFLTDLGNLKQLITLVISNNNLSGEIPLLFSN 544
+ ++ +L+L +N ++ ++ L L L +++N L+ P +FS+
Sbjct: 448 SENPSLEQLFLGENMLQLAWETELCWDV-----FEGLSHLQVLYLNHNYLNSLPPGVFSH 502
Query: 545 ISFLYILDMSNNSLSGSTPESIGSLRTVKFLVLRNNYLSGKLPLSLKNCT 594
++ L L +++N L+ + + ++ L + N L P + +
Sbjct: 503 LTALRGLSLNSNRLTVLSHNDL--PANLEILDISRNQLLAPNPDVFVSLS 550
|
| >3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844 | Back alignment and structure |
|---|
Score = 133 bits (337), Expect = 6e-33
Identities = 98/482 (20%), Positives = 174/482 (36%), Gaps = 66/482 (13%)
Query: 112 LKDLEYLDLSMNNFTGFQVPEFIGSLKELRYLNLSGSFFSGTIPQTLGNLS--NLLYLDL 169
LK L LDLS N + G L L+ ++ S + L L L + L
Sbjct: 122 LKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSL 181
Query: 170 NNFLDQSNQIDLEWLSGLSSLVYFNLGGADLSKAGAYWL--------------EVFNKLH 215
S + ++W ++ L D+S G H
Sbjct: 182 AANSLYSR-VSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAH 240
Query: 216 SFVELHLPNCNLPSLPLS-FPSLNFASLQVLDLSNNDFNSTTPHWLFNITSLLCLDLGSN 274
+ N+ + F L +S++ LDLS+ S + L L+L N
Sbjct: 241 HIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYN 300
Query: 275 DLQGDIPDGFASLNSLQELDLSGNSFLGGQLSRNLGKLCNLRTMILSRNNISSEVSDFLD 334
+ + F L++LQ L+LS N LG S N L + + L +N+I+
Sbjct: 301 KINKIADEAFYGLDNLQVLNLSYNL-LGELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFK 359
Query: 335 GLSECTNSILLEKLELRFNQFTGILPISLGSLKNLRHLVLWQNSFLGSIPPSIGNLTL-L 393
L + L+ L+LR N T ++ + ++ + L N + ++ + L
Sbjct: 360 FLEK------LQTLDLRDNALT-----TIHFIPSIPDIFLSGNKLV-----TLPKINLTA 403
Query: 394 KELYLASNQMNGQKISDSYQHLKNQTELRTLVLNKARISDTISDWFWQLSLTLDELDVAY 453
++L+ N++ I + + L+ L+LN+ R S D + +L++L +
Sbjct: 404 NLIHLSENRLENLDILYFLLRVPH---LQILILNQNRFSSCSGDQTPSENPSLEQLFLGE 460
Query: 454 NELRGRVPNSLGFNFPAKVDLSFNNFEGRLLLWSFNVTKLYLRDNSFSGLIPNDIGQNLP 513
N L+ L ++ F ++ LYL N + +P +
Sbjct: 461 NMLQLAWETELCWDV-------FEGLS--------HLQVLYLNHNYLNS-LPPGV----- 499
Query: 514 FLTDLGNLKQLITLVISNNNLSGEIPLLFSNISFLYILDMSNNSLSGSTPESIGSLRTVK 573
+L L L +++N L+ + L ILD+S N L P+ SL +
Sbjct: 500 ----FSHLTALRGLSLNSNRLTVLSHNDLP--ANLEILDISRNQLLAPNPDVFVSLSVLD 553
Query: 574 FL 575
Sbjct: 554 IT 555
|
| >3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844 | Back alignment and structure |
|---|
Score = 118 bits (297), Expect = 6e-28
Identities = 77/381 (20%), Positives = 126/381 (33%), Gaps = 39/381 (10%)
Query: 224 NCNLPSLPLSFPSLNFASLQVLDLSNNDFNSTTPHWLFNITSLLCLDLGSNDLQGDIPDG 283
CNL +P + + L LS N + T + L L+LGS I
Sbjct: 13 FCNLTQVPQVLNTT-----ERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKE 67
Query: 284 -FASLNSLQELDLSGNSFLGGQLSRN-LGKLCNLRTMILSRNNISSEV--SDFLDGLSEC 339
F +L +L+ LDL + L + L +L + L +S V + L
Sbjct: 68 AFRNLPNLRILDLGSSKIY--FLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKA- 124
Query: 340 TNSILLEKLELRFNQFTGI-LPISLGSLKNLRHLVLWQNSFLGSIPPSIGNLTL--LKEL 396
L +L+L NQ + L S G L +L+ + N + L L
Sbjct: 125 -----LTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFF 179
Query: 397 YLASNQMNGQKISDSYQHLKNQTE--LRTLVLNKARISDTISDWFWQLSLTLDELDVAYN 454
LA+N + + D + + L L ++ + I+ F +
Sbjct: 180 SLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILA 239
Query: 455 ELRGRVPNSLGFNFPAKVDLSFNNFEGRLLLWSFNVTKLYLRDNSFSGLIPNDIGQNLPF 514
GF F D N F G L +V L L L
Sbjct: 240 HHI----MGAGFGFHNIKDPDQNTFAG---LARSSVRHLDLSHGFVFSLNSR-------- 284
Query: 515 LTDLGNLKQLITLVISNNNLSGEIPLLFSNISFLYILDMSNNSLSGSTPESIGSLRTVKF 574
LK L L ++ N ++ F + L +L++S N L + L V +
Sbjct: 285 --VFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAY 342
Query: 575 LVLRNNYLSGKLPLSLKNCTF 595
+ L+ N+++ + K
Sbjct: 343 IDLQKNHIAIIQDQTFKFLEK 363
|
| >3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844 | Back alignment and structure |
|---|
Score = 105 bits (264), Expect = 8e-24
Identities = 82/384 (21%), Positives = 145/384 (37%), Gaps = 40/384 (10%)
Query: 71 NNRTASVIKLNLNNPFRDSFGSFEDDAGHELGGEISPSLLQLKDLEYLDLSMNNFTGFQV 130
N ++ ++ N D G+F + + + SL+ + +N
Sbjct: 202 RNMVLEILDVSGNGWTVDITGNFS----NAISKSQAFSLILAHHIMGAGFGFHNIKDPDQ 257
Query: 131 PEFIGSLKE-LRYLNLSGSFFSGTIPQTLGNLSNLLYLDL-NNFLDQSNQIDLEWLSGLS 188
F G + +R+L+LS F + L +L L+L N + N+I E GL
Sbjct: 258 NTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKI---NKIADEAFYGLD 314
Query: 189 SLVYFNLGGADLSKAGAYWLEVFNKLHSFVELHLPNCNLPSLPLSFPSLNFASLQVLDLS 248
+L NL L + + F L + L ++ + LQ LDL
Sbjct: 315 NLQVLNLSYNLLGELYSSN---FYGLPKVAYIDLQKNHIAIIQDQTFK-FLEKLQTLDLR 370
Query: 249 NNDFNSTTPHWLFNITSLLCLDLGSNDLQGDIPDGFASLNSLQELDLSGNSFLGGQLSRN 308
+N + + I S+ + L N L + + LS N +
Sbjct: 371 DNALTT-----IHFIPSIPDIFLSGNKLVTLPKINL----TANLIHLSENRLENLDILYF 421
Query: 309 LGKLCNLRTMILSRNNISSEVSDFLDGLSECTNSILLEKLELRFNQF-----TGILPISL 363
L ++ +L+ +IL++N SS G + + LE+L L N T +
Sbjct: 422 LLRVPHLQILILNQNRFSS-----CSGDQTPSENPSLEQLFLGENMLQLAWETELCWDVF 476
Query: 364 GSLKNLRHLVLWQNSFLGSIPPSI-GNLTLLKELYLASNQMNGQKISDSYQHLKNQTELR 422
L +L+ L L +++L S+PP + +LT L+ L L SN++ H L
Sbjct: 477 EGLSHLQVLYL-NHNYLNSLPPGVFSHLTALRGLSLNSNRLT------VLSHNDLPANLE 529
Query: 423 TLVLNKARISDTISDWFWQLSLTL 446
L +++ ++ D F LS+
Sbjct: 530 ILDISRNQLLAPNPDVFVSLSVLD 553
|
| >1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466 | Back alignment and structure |
|---|
Score = 136 bits (344), Expect = 1e-34
Identities = 104/484 (21%), Positives = 163/484 (33%), Gaps = 84/484 (17%)
Query: 107 PSLLQLKDLEYLDLSMNNFTGFQVPEFIGSLKELRYLNLSGSFFSGTIPQTLGNLSNLLY 166
S L + L + + L L +N S + + P L NL+ L+
Sbjct: 40 VSQTDLDQVTTLQADRLGIKS---IDGVEYLNNLTQINFSNNQLTDITP--LKNLTKLVD 94
Query: 167 LDLNNFLDQSNQI-DLEWLSGLSSLVYFNLGGADLSKAGAYWLEVFNKLHSFVELHLPNC 225
+ +NN NQI D+ L+ L++L L ++ ++ L + L L +
Sbjct: 95 ILMNN-----NQIADITPLANLTNLTGLTLFNNQITD-----IDPLKNLTNLNRLELSSN 144
Query: 226 NLPSLPLSFPSLNFASLQVLDLSNNDFNSTTPHWLFNITSLLCLDLGSNDLQGDIPDGFA 285
+ + SLQ L N T L N+T+L LD+ SN + A
Sbjct: 145 TISDIS---ALSGLTSLQQLSFGNQ---VTDLKPLANLTTLERLDISSNKVSD--ISVLA 196
Query: 286 SLNSLQELDLSGNSFLGGQLSRNLGKLCNLRTMILSRNNISSEVSDFLDGLSECTNSILL 345
L +L+ L + N LG L NL + L+ N + + L+ TN L
Sbjct: 197 KLTNLESLIATNNQISD---ITPLGILTNLDELSLNGNQLKD-----IGTLASLTN---L 245
Query: 346 EKLELRFNQFTGILPISLGSLKNLRHLVLWQNSFLGSIPPSIGNLTLLKELYLASNQMNG 405
L+L NQ + + L L L L L N P + LT L L L NQ+
Sbjct: 246 TDLDLANNQISNL--APLSGLTKLTELKLGANQISNISP--LAGLTALTNLELNENQLE- 300
Query: 406 QKISDSYQHLKNQTELRTLVLNKARISDTISDWFWQLSLTLDELDVAYNELRGRVPNSLG 465
+ N L L L ISD L+ L L N++ +SL
Sbjct: 301 -----DISPISNLKNLTYLTLYFNNISDISP--VSSLT-KLQRLFFYNNKVSD--VSSLA 350
Query: 466 FNFPAKVDLSFNNFEGRLLLWSFNVTKLYLRDNSFSGLIPNDIGQNLPFLTDLGNLKQLI 525
N+ L N S L P L NL ++
Sbjct: 351 NLT--------------------NINWLSAGHNQISDLTP------------LANLTRIT 378
Query: 526 TLVISNNNLSGEIPLLFSNISFLYILDMSNNSLSGSTPESIGSLRTVKFLVLRNNYLSGK 585
L +++ + +N+S + +L P +I + + N S
Sbjct: 379 QLGLNDQAWTNAPVNYKANVSIPNTVKNVTGAL--IAPATISDGGSYTEPDITWNLPSYT 436
Query: 586 LPLS 589
+S
Sbjct: 437 NEVS 440
|
| >1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466 | Back alignment and structure |
|---|
Score = 117 bits (295), Expect = 3e-28
Identities = 91/397 (22%), Positives = 142/397 (35%), Gaps = 64/397 (16%)
Query: 107 PSLLQLKDLEYLDLSMNNFTGFQVPEFIGSLKELRYLNLSGSFFSGTIPQTLGNLSNLLY 166
L L +L L L N T + + +L L L LS + S L L++L
Sbjct: 106 TPLANLTNLTGLTLFNNQITD---IDPLKNLTNLNRLELSSNTISDISA--LSGLTSLQQ 160
Query: 167 LDLNNFLDQSNQIDLEWLSGLSSLVYFNLGGADLSKAGAYWLEVFNKLHSFVELHLPNCN 226
L N DL+ L+ L++L ++ +S + V KL + L N
Sbjct: 161 LSFGN-----QVTDLKPLANLTTLERLDISSNKVSD-----ISVLAKLTNLESLIATNNQ 210
Query: 227 LPSLPLSFPSLNFASLQVLDLSNNDFNSTTPHWLFNITSLLCLDLGSNDLQGDIPDGFAS 286
+ + P +L L L+ N L ++T+L LDL +N + P +
Sbjct: 211 ISDIT---PLGILTNLDELSLNGNQLKDIGT--LASLTNLTDLDLANNQISNLAP--LSG 263
Query: 287 LNSLQELDLSGNSFLGGQLSRNLGKLCNLRTMILSRNNISSEVSDFLDGLSECTNSILLE 346
L L EL L N L L L + L+ N + + +S N L
Sbjct: 264 LTKLTELKLGANQISN---ISPLAGLTALTNLELNENQLED-----ISPISNLKN---LT 312
Query: 347 KLELRFNQFTGILPISLGSLKNLRHLVLWQNSFLGSIPPSIGNLTLLKELYLASNQMNGQ 406
L L FN + I P+S SL L+ L + N S S+ NLT + L NQ++
Sbjct: 313 YLTLYFNNISDISPVS--SLTKLQRLFFYNNKV--SDVSSLANLTNINWLSAGHNQIS-- 366
Query: 407 KISDSYQHLKNQTELRTLVLNKARISDTISDWFWQLSL---------------------T 445
L N T + L LN ++ ++ +S+ +
Sbjct: 367 ----DLTPLANLTRITQLGLNDQAWTNAPVNYKANVSIPNTVKNVTGALIAPATISDGGS 422
Query: 446 LDELDVAYNELRGRVPNSLGFNFPAKVDLSFNNFEGR 482
E D+ +N S F+ P + F G
Sbjct: 423 YTEPDITWNLPSYTNEVSYTFSQPVTIGKGTTTFSGT 459
|
| >1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466 | Back alignment and structure |
|---|
Score = 107 bits (269), Expect = 6e-25
Identities = 84/359 (23%), Positives = 145/359 (40%), Gaps = 51/359 (14%)
Query: 234 FPSLNFASLQVLDLSNNDFNSTTPHWLFNITSLLCLDLGSNDLQGDIPDGFASLNSLQEL 293
F A L + T ++ + L ++ DG LN+L ++
Sbjct: 18 FTDTALAEKMKTVLGKTNVTDTVS--QTDLDQVTTLQADRLGIK--SIDGVEYLNNLTQI 73
Query: 294 DLSGNSFLGGQLSR--NLGKLCNLRTMILSRNNISSEVSDFLDGLSECTNSILLEKLELR 351
+ S N QL+ L L L ++++ N I+ + L+ TN L L L
Sbjct: 74 NFSNN-----QLTDITPLKNLTKLVDILMNNNQIAD-----ITPLANLTN---LTGLTLF 120
Query: 352 FNQFTGILPISLGSLKNLRHLVLWQNSFLGSIPPSIGNLTLLKELYLASNQMNGQKISDS 411
NQ T I L +L NL L L N+ S ++ LT L++L + + + ++
Sbjct: 121 NNQITDI--DPLKNLTNLNRLELSSNTI--SDISALSGLTSLQQLSFGNQVTDLKPLA-- 174
Query: 412 YQHLKNQTELRTLVLNKARISDTISDWFWQLSLTLDELDVAYNELRGRVPNSLGFNFPAK 471
N T L L ++ ++SD +L+ L+ L N++ + +
Sbjct: 175 -----NLTTLERLDISSNKVSDISV--LAKLT-NLESLIATNNQISD-ITPLGILTNLDE 225
Query: 472 VDLSFNNFEGRLLLWSF-NVTKLYLRDNSFSGLIPNDIGQNLPFLTDLGNLKQLITLVIS 530
+ L+ N + L S N+T L L +N S L P L L +L L +
Sbjct: 226 LSLNGNQLKDIGTLASLTNLTDLDLANNQISNLAP------------LSGLTKLTELKLG 273
Query: 531 NNNLSGEIPLLFSNISFLYILDMSNNSLSGSTPESIGSLRTVKFLVLRNNYLSGKLPLS 589
N +S PL + ++ L L+++ N L +P I +L+ + +L L N +S P+S
Sbjct: 274 ANQISNISPL--AGLTALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNISDISPVS 328
|
| >2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570 | Back alignment and structure |
|---|
Score = 130 bits (329), Expect = 2e-32
Identities = 97/507 (19%), Positives = 164/507 (32%), Gaps = 55/507 (10%)
Query: 106 SPSLLQLKDLEYLDLSMNNFTGFQVPEFIGSLKELRYLNLSGSFFSGTIPQTLGNLSNLL 165
S S +L+ LDLS + SL L L L+G+ LS+L
Sbjct: 45 SYSFFSFPELQVLDLSRCEIQTIE-DGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQ 103
Query: 166 YLDL-NNFLDQSNQIDLEWLSGLSSLVYFNLGGADLSKAGAYWLEVFNKLHSFVELHLPN 224
L L ++ + L +L N+ + E F+ L + L L +
Sbjct: 104 KLVAVETNL---ASLENFPIGHLKTLKELNVAHNLIQSFK--LPEYFSNLTNLEHLDLSS 158
Query: 225 CNLPSLP----LSFPSLNFASLQVLDLSNNDFNSTTPHWLFNITSLLCLDLGSNDLQGDI 280
+ S+ + +L LDLS N N F L L L +N ++
Sbjct: 159 NKIQSIYCTDLRVLHQMPLLNLS-LDLSLNPMNFI-QPGAFKEIRLHKLTLRNNFDSLNV 216
Query: 281 PDG-FASLNSLQELDLSGNSFLGG--QLSRNLGKLCNLRTMILSRNNISSEVSDFLDGLS 337
L L+ L F + L L + + ++ D +
Sbjct: 217 MKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIID 276
Query: 338 ECTNSILLEKLELRFNQFTGILP-------------------ISLGSLKNLRHLVLWQNS 378
+ L + LK+L+ L N
Sbjct: 277 LFNCLTNVSSFSLVSVTIERVKDFSYNFGWQHLELVNCKFGQFPTLKLKSLKRLTFTSNK 336
Query: 379 FLGSIPPSIGNLTLLKELYLASNQMNGQKISDSYQHLKNQTELRTLVLNKARISDTISDW 438
G S +L L+ L L+ N + Q T L+ L L+ + T+S
Sbjct: 337 --GGNAFSEVDLPSLEFLDLSRNGL--SFKGCCSQSDFGTTSLKYLDLSFNGVI-TMSSN 391
Query: 439 FWQLSLTLDELDVAYNELRGRVPNSLGFNFPA--KVDLSFNNFEG---RLLLWSFNVTKL 493
F L L+ LD ++ L+ S+ + +D+S + + ++ L
Sbjct: 392 FLGLE-QLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVL 450
Query: 494 YLRDNSFSGLIPNDIGQNLPFLTDLGNLKQLITLVISNNNLSGEIPLLFSNISFLYILDM 553
+ NSF DI L+ L L +S L P F+++S L +L+M
Sbjct: 451 KMAGNSFQENFLPDI---------FTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNM 501
Query: 554 SNNSLSGSTPESIGSLRTVKFLVLRNN 580
++N L L +++ + L N
Sbjct: 502 ASNQLKSVPDGIFDRLTSLQKIWLHTN 528
|
| >2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570 | Back alignment and structure |
|---|
Score = 122 bits (307), Expect = 2e-29
Identities = 92/483 (19%), Positives = 151/483 (31%), Gaps = 58/483 (12%)
Query: 114 DLEYLDLSMNNFTGFQVPEFIGSLKELRYLNLSGSFFSGTIPQTLGNLSNLLYLDL-NNF 172
+ LDLS N F S EL+ L+LS +LS+L L L N
Sbjct: 29 STKNLDLSFNPLRHLGSYSF-FSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNP 87
Query: 173 LDQSNQIDLEWLSGLSSLVYFNLGGADLSKAGAYWLEVFNKLHSFVELHLPNCNLPSLPL 232
+ + L SGLSSL +L+ L + EL++ + + S L
Sbjct: 88 I---QSLALGAFSGLSSLQKLVAVETNLASLEN---FPIGHLKTLKELNVAHNLIQSFKL 141
Query: 233 SFPSLNFASLQVLDLSNNDFNSTTPHWLFNITSL----LCLDLGSNDLQGDIPDGFASLN 288
N +L+ LDLS+N S L + + L LDL N + I G
Sbjct: 142 PEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNF-IQPGAFKEI 200
Query: 289 SLQELDLSGNSFLGGQLSRNLGKLCNLRTMILSRNNISSE---VSDFLDGLSECTNSILL 345
L +L L N + + L L L +E L N +
Sbjct: 201 RLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIE 260
Query: 346 EKLELRFNQFTGILPISLGSLKNLRHLVLWQNSFLGSIPPSIGNLTLLKELYLASNQMNG 405
E + + + L N+ L + + + N + L L + +
Sbjct: 261 EFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVT-IERVKDFSYN-FGWQHLELVNCKFGQ 318
Query: 406 QKISDSYQHLKNQTELRTLVLNKARISDTISDWFWQLSLTLDELDVAYNELRGRVPNSLG 465
L+ L + + S L +L+ LD++ N L + S
Sbjct: 319 FPTL-------KLKSLKRLTFTSNKGGNAFS--EVDLP-SLEFLDLSRNGLSFKGCCSQS 368
Query: 466 FNFPAKVDLSFNNFEGRLLLWSFNVTKLYLRDNSFSGLIPNDIGQNLPFLTDLGNLKQLI 525
++ L L N + N L+QL
Sbjct: 369 DFGTT------------------SLKYLDLSFNGVITMSSN-----------FLGLEQLE 399
Query: 526 TLVISNNNLSGEIPL-LFSNISFLYILDMSNNSLSGSTPESIGSLRTVKFLVLRNNYLSG 584
L ++NL +F ++ L LD+S+ + L +++ L + N
Sbjct: 400 HLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQE 459
Query: 585 KLP 587
Sbjct: 460 NFL 462
|
| >2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570 | Back alignment and structure |
|---|
Score = 109 bits (275), Expect = 2e-25
Identities = 81/464 (17%), Positives = 158/464 (34%), Gaps = 59/464 (12%)
Query: 108 SLLQLKDLEYLDLSMNNFTGFQVPEFIGSLKELRYLNLSGSFFSGTIPQTLGNLSNLLYL 167
+ LK L+ L+++ N F++PE+ +L L +L+LS + L L + L
Sbjct: 119 PIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLL 178
Query: 168 DLNNFLDQSNQIDLEWLSGLSSL------VYFNLGGADLSKAGAYWLEVFNKLHSFVELH 221
+L+ L N ++ + + N ++ K L +
Sbjct: 179 NLSLDL-SLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEF 237
Query: 222 LPNCNLPSLPLS-FPSLNFASLQVLDLSNND-FNSTTPHWLFNITSLLCLDLGSNDLQGD 279
NL S L +++ L+ D + +T++ L S ++
Sbjct: 238 RNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIER- 296
Query: 280 IPDGFASLNSLQELDLSGNSFLGGQLSRNLGKLCNLRTMILSRNNISSEVSDFLDGLSEC 339
+ D F+ Q L+L F KL +L+ + + N + +
Sbjct: 297 VKD-FSYNFGWQHLELVNCKFGQFP----TLKLKSLKRLTFTSNKGGN-----AFSEVDL 346
Query: 340 TNSILLEKLELRFNQFT--GILPISLGSLKNLRHLVLWQNSFLGSIPPSIGNLTLLKELY 397
+ LE L+L N + G S +L++L L N + ++ + L L+ L
Sbjct: 347 PS---LEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNG-VITMSSNFLGLEQLEHLD 402
Query: 398 LASNQMNGQKISDSYQHLKNQTELRTLVLNKARISDTISDWFWQLSLTLDELDVAYNELR 457
+ + +++S+ + L L ++ + F LS +L+ L +A N +
Sbjct: 403 FQHSNL--KQMSEFSV-FLSLRNLIYLDISHTHTRVAFNGIFNGLS-SLEVLKMAGNSFQ 458
Query: 458 GRVPNSLGFNFPAKVDLSFNNFEGRLLLWSFNVTKLYLRDNSFSGLIPNDIGQNLPFLTD 517
+ F N+T L L L P
Sbjct: 459 ENFLPDI-----------FTELR--------NLTFLDLSQCQLEQLSPT----------A 489
Query: 518 LGNLKQLITLVISNNNLSGEIPLLFSNISFLYILDMSNNSLSGS 561
+L L L +++N L +F ++ L + + N S
Sbjct: 490 FNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCS 533
|
| >2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570 | Back alignment and structure |
|---|
Score = 109 bits (275), Expect = 2e-25
Identities = 73/361 (20%), Positives = 130/361 (36%), Gaps = 33/361 (9%)
Query: 104 EISPSLLQLKDLEYLDLSMNNFTGFQVPEFIGSLKELRYLNLSGSFFSGTI------PQT 157
I P + L L L N + + I L L L F
Sbjct: 191 FIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSA 250
Query: 158 LGNLSNLLYLDLN-NFLDQSNQIDLEWLSGLSSLVYFNLGGADLSKAGAYWLEVFNKLHS 216
L L NL + +LD ++ + L+++ F+L + + ++ F+
Sbjct: 251 LEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIER-----VKDFSYNFG 305
Query: 217 FVELHLPNCNLPSLPLSFPSLNFASLQVLDLSNNDFNSTTPHWLFNITSLLCLDLGSNDL 276
+ L L NC P+L SL+ L ++N + ++ SL LDL N L
Sbjct: 306 WQHLELVNCKFGQF----PTLKLKSLKRLTFTSNKGGNAFS--EVDLPSLEFLDLSRNGL 359
Query: 277 Q--GDIPDGFASLNSLQELDLSGNSFLGGQLSRNLGKLCNLRTMILSRNNISSEVSDFLD 334
G SL+ LDLS N + +S N L L + +N+ +
Sbjct: 360 SFKGCCSQSDFGTTSLKYLDLSFNGVI--TMSSNFLGLEQLEHLDFQHSNLKQ-----MS 412
Query: 335 GLSECTNSILLEKLELRFNQFTGILPISLGSLKNLRHLVLWQNSFLGSIPPSI-GNLTLL 393
S + L L++ L +L L + NSF + P I L L
Sbjct: 413 EFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNL 472
Query: 394 KELYLASNQMNGQKISDSYQHLKNQTELRTLVLNKARISDTISDWFWQLSLTLDELDVAY 453
L L+ Q+ +++S + + + L+ L + ++ ++ D + +L ++ +
Sbjct: 473 TFLDLSQCQL--EQLSPT--AFNSLSSLQVLNMASNQLK-SVPDGIFDRLTSLQKIWLHT 527
Query: 454 N 454
N
Sbjct: 528 N 528
|
| >2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570 | Back alignment and structure |
|---|
Score = 104 bits (260), Expect = 1e-23
Identities = 56/283 (19%), Positives = 102/283 (36%), Gaps = 22/283 (7%)
Query: 104 EISPSLLQLKDLEYLDLSMNNFTGFQVPEFIGSLKELRYLNLSGSFFSGTIPQTLGNLSN 163
+I L ++ L + + + L +N F L +
Sbjct: 273 DIIDLFNCLTNVSSFSLVSVTIERVKDFSYNFGWQHLELVNCKFGQFPT------LKLKS 326
Query: 164 LLYLDLNNFLDQSNQI-DLEWLSGLSSLVYFNLGGADLSKAGAYWLEVFNKLHSFVELHL 222
L L + N+ + L SL + +L LS G + S L L
Sbjct: 327 LKRLTFTS-----NKGGNAFSEVDLPSLEFLDLSRNGLSFKGCC-SQSDFGTTSLKYLDL 380
Query: 223 PNCNLPSLPLSFPSLNFASLQVLDLSNNDFNSTTPHWLF-NITSLLCLDLGSNDLQGDIP 281
+ ++ +F L L+ LD +++ + +F ++ +L+ LD+ +
Sbjct: 381 SFNGVITMSSNFLGLE--QLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFN 438
Query: 282 DGFASLNSLQELDLSGNSFLGGQLSRNLGKLCNLRTMILSRNNISSEVSDFLDGLSECTN 341
F L+SL+ L ++GNSF L +L NL + LS+ + + LS
Sbjct: 439 GIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSS--- 495
Query: 342 SILLEKLELRFNQFTGILPISLGSLKNLRHLVLWQNSFLGSIP 384
L+ L + NQ + L +L+ + L N + S P
Sbjct: 496 ---LQVLNMASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 535
|
| >2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570 | Back alignment and structure |
|---|
Score = 47.8 bits (114), Expect = 8e-06
Identities = 15/106 (14%), Positives = 33/106 (31%), Gaps = 10/106 (9%)
Query: 489 NVTKLYLRDNSFSGLIPNDIGQNLPFLTDLGNLKQLITLVISNNNLSGEIPLLFSNISFL 548
+ L L N L + +L L +S + + ++S L
Sbjct: 29 STKNLDLSFNPLRHLGSYS----------FFSFPELQVLDLSRCEIQTIEDGAYQSLSHL 78
Query: 549 YILDMSNNSLSGSTPESIGSLRTVKFLVLRNNYLSGKLPLSLKNCT 594
L ++ N + + L +++ LV L+ + +
Sbjct: 79 STLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLK 124
|
| >2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549 | Back alignment and structure |
|---|
Score = 126 bits (319), Expect = 4e-31
Identities = 89/494 (18%), Positives = 165/494 (33%), Gaps = 40/494 (8%)
Query: 114 DLEYLDLSMNNFTGFQVPEFIGSLKELRYLNLSGSFFSGTIPQTLGNLSNLLYLDL-NNF 172
++ LDLS N T + + L+ L L S + +L +L +LDL +N
Sbjct: 27 AMKSLDLSFNKITYIG-HGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNH 85
Query: 173 LDQSNQIDLEWLSGLSSLVYFNLGGADLSKAGAYWLEVFNKLHSFVELHLPNCNLPSLPL 232
L + + W LSSL Y NL G G +F L + L + N S
Sbjct: 86 L---SSLSSSWFGPLSSLKYLNLMGNPYQTLGV--TSLFPNLTNLQTLRIGNVETFSEIR 140
Query: 233 SFPSLNFASLQVLDLSNNDFNSTTPHWLFNITSLLCLDLGSNDLQGDIPDGFASLNSLQE 292
SL L++ + L +I + L L ++ + L+S++
Sbjct: 141 RIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESAFLLEIFADILSSVRY 200
Query: 293 LDLSGNSFLGGQLS--RNLGKLCNLRTMILSRNNISSEVSDFLDGLSECTNSI------- 343
L+L + Q S ++ + + ++ E + L L +
Sbjct: 201 LELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEFDD 260
Query: 344 --LLEKLELRFNQFTGILPISLGSLKNLRHLVLWQNSFLGSIPPSIGNLTLLKELYLASN 401
L + ++ + + +R L + Q + L +K + + ++
Sbjct: 261 CTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENS 320
Query: 402 QMNGQKISDSYQHLKNQTELRTLVLNKARISD--TISDWFWQLSLTLDELDVAYNELRGR 459
++ + S ++ L L L++ + + + +L L ++ N LR
Sbjct: 321 KV--FLVPCS--FSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSM 376
Query: 460 VPNSLGF-NFPA--KVDLSFNNFE--GRLLLWSFNVTKLYLRDNSFSGLIPNDIGQNLPF 514
+D+S N F W + L L ++ I Q L
Sbjct: 377 QKTGEILLTLKNLTSLDISRNTFHPMPDSCQWPEKMRFLNLSSTGIR-VVKTCIPQTLEV 435
Query: 515 LTDLGN--------LKQLITLVISNNNLSGEIPLLFSNISFLYILDMSNNSLSGSTPESI 566
L N L +L L IS N L + L ++ +S N L
Sbjct: 436 LDVSNNNLDSFSLFLPRLQELYISRNKLKTLPDASLFPV--LLVMKISRNQLKSVPDGIF 493
Query: 567 GSLRTVKFLVLRNN 580
L +++ + L N
Sbjct: 494 DRLTSLQKIWLHTN 507
|
| >2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549 | Back alignment and structure |
|---|
Score = 112 bits (283), Expect = 1e-26
Identities = 70/461 (15%), Positives = 154/461 (33%), Gaps = 45/461 (9%)
Query: 104 EISPSLLQ-LKDLEYLDLSMNNFTGFQVPEFIGSLKELRYLNLSGSFFSGTIP-QTLGNL 161
+S S L L+YL+L N + V +L L+ L + I L
Sbjct: 88 SLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGL 147
Query: 162 SNLLYLDL-NNFLDQSNQIDLEWLSGLSSLVYFNLGGADLSKAGAYWLEVFNKLHSFVEL 220
++L L++ L + L + + + L ++ + + L S L
Sbjct: 148 TSLNELEIKALSL---RNYQSQSLKSIRDIHHLTLHLSESAFLLE---IFADILSSVRYL 201
Query: 221 HLPNCNLPSLPLSFPSLNFASLQVLDLSNNDFNSTTPHWLFNITSLLCLDLGSNDLQGDI 280
L + NL S ++ + + T + LL L ++++
Sbjct: 202 ELRDTNLARFQFSPLPVDE-VSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVE--- 257
Query: 281 PDGFASLNSLQELDLSGNSFLGGQLSRNLGKLCNLRTMILSRNNISSEVSDFLDGLSECT 340
F D + + + + +R + + + + ++S L +
Sbjct: 258 ---FDDCTLNGLGDFNPSESDVVSELGKVETV-TIRRLHIPQFYLFYDLSTVYSLLEK-- 311
Query: 341 NSILLEKLELRFNQFTGILPISLGSLKNLRHLVLWQNSFLGSIPPS---IGNLTLLKELY 397
++++ + ++ + LK+L L L +N + + G L+ L
Sbjct: 312 ----VKRITVENSKVFLVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLV 367
Query: 398 LASNQMNGQKISDSYQHLKNQTELRTLVLNKARISDTISDWFWQLSLTLDELDVAYNELR 457
L+ N + + + + + L L +L +++ W + L+++ +R
Sbjct: 368 LSQNHL--RSMQKTGEILLTLKNLTSLDISRNTFHPMPDSCQWPEKMR--FLNLSSTGIR 423
Query: 458 GRVPNSLGFNFPAKVDLSFNNFEGRLLLWSFNVTKLYLRDNSFSGLIPNDIGQNLPFLTD 517
V + +D+S NN + L+ + +LY+ N L
Sbjct: 424 -VVKTCI-PQTLEVLDVSNNNLD-SFSLFLPRLQELYISRNKLKTLPDA----------- 469
Query: 518 LGNLKQLITLVISNNNLSGEIPLLFSNISFLYILDMSNNSL 558
L+ + IS N L +F ++ L + + N
Sbjct: 470 -SLFPVLLVMKISRNQLKSVPDGIFDRLTSLQKIWLHTNPW 509
|
| >2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549 | Back alignment and structure |
|---|
Score = 102 bits (257), Expect = 3e-23
Identities = 70/362 (19%), Positives = 126/362 (34%), Gaps = 30/362 (8%)
Query: 224 NCNLPSLPLSFPSLNFASLQVLDLSNNDFNSTTPHWLFNITSLLCLDLGSNDLQGDIPDG 283
+ + S+P + +++ LDLS N L +L L L S+ + D
Sbjct: 14 SRSFTSIPSGLTA----AMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDA 69
Query: 284 FASLNSLQELDLSGNSFLGGQLSRNLGKLCNLRTMILSRNNISS-EVSDFLDGLSECTNS 342
F SL SL+ LDLS N L S G L +L+ + L N + V+ L+
Sbjct: 70 FYSLGSLEHLDLSDNH-LSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTN---- 124
Query: 343 ILLEKLEL-RFNQFTGILPISLGSLKNLRHLVLWQNSFLGSIPPSIGNLTLLKELYLASN 401
L+ L + F+ I I L +L L + S S+ ++ + L L +
Sbjct: 125 --LQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLS 182
Query: 402 QMNGQKISDSYQHLKNQTELRTLVLNKARISDTISDWFWQLSLTLDELDVAYNELRGRVP 461
+ + +R L L ++ F L +DE+ +L R
Sbjct: 183 ESA----FLLEIFADILSSVRYLELRDTNLA-----RFQFSPLPVDEVSSPMKKLAFRGS 233
Query: 462 NSLGFNFPAKVDLSFNNFEGRLLLWSFNVTKLYLRDNSFSGLIPNDIGQNLPFLTDLGNL 521
+F + L L L L +D+ L +
Sbjct: 234 VLTDESFNELLKL----LRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKV----ET 285
Query: 522 KQLITLVISNNNLSGEIPLLFSNISFLYILDMSNNSLSGSTPESIGSLRTVKFLVLRNNY 581
+ L I L ++ ++S + + + + N+ + L++++FL L N
Sbjct: 286 VTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVFLVPCSFSQHLKSLEFLDLSENL 345
Query: 582 LS 583
+
Sbjct: 346 MV 347
|
| >2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549 | Back alignment and structure |
|---|
Score = 64.7 bits (158), Expect = 4e-11
Identities = 39/181 (21%), Positives = 66/181 (36%), Gaps = 17/181 (9%)
Query: 100 ELGGEISPSLLQLKDLEYLDLSMNNFTGFQ-VPEFIGSLKELRYLNLSGSFFSGTIPQTL 158
E + S L+ L LS N+ Q E + +LK L L++S + F +P +
Sbjct: 348 EEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFH-PMPDSC 406
Query: 159 GNLSNLLYLDLNNFLDQSNQIDLEWLSGLSSLVYFNLGGADLSKAGAYWLEVFNKLHSFV 218
+ +L+L S I + +L ++ +L L
Sbjct: 407 QWPEKMRFLNL-----SSTGIRVVKTCIPQTLEVLDVSNNNLD-------SFSLFLPRLQ 454
Query: 219 ELHLPNCNLPSLPLSFPSLNFASLQVLDLSNNDFNSTTPHWLFNITSLLCLDLGSNDLQG 278
EL++ L +LP + F L V+ +S N S +TSL + L +N
Sbjct: 455 ELYISRNKLKTLP---DASLFPVLLVMKISRNQLKSVPDGIFDRLTSLQKIWLHTNPWDC 511
Query: 279 D 279
Sbjct: 512 S 512
|
| >4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347 | Back alignment and structure |
|---|
Score = 122 bits (309), Expect = 7e-31
Identities = 80/352 (22%), Positives = 136/352 (38%), Gaps = 44/352 (12%)
Query: 108 SLLQLKDLEYLDLSMNNFTGFQVPEFIGSLKELRYLNLSGSFFSGTIPQTLGNLSNLLYL 167
L + L + T L+ + L ++G Q + L+NL YL
Sbjct: 17 PDADLAEGIRAVLQKASVTD---VVTQEELESITKLVVAGEKV--ASIQGIEYLTNLEYL 71
Query: 168 DLNNFLDQSNQI-DLEWLSGLSSLVYFNLGGADLSKAGAYWLEVFNKLHSFVELHLPNCN 226
+LN NQI D+ LS L L +G ++ + L + EL+L N
Sbjct: 72 NLNG-----NQITDISPLSNLVKLTNLYIGTNKITD-----ISALQNLTNLRELYLNEDN 121
Query: 227 LPSLPLSFPSLNFASLQVLDLSNNDFNSTTPHWLFNITSLLCLDLGSNDLQGDIPDGFAS 286
+ + P N + L+L N N + L N+T L L + + ++ P A+
Sbjct: 122 ISDIS---PLANLTKMYSLNLGAN-HNLSDLSPLSNMTGLNYLTVTESKVKDVTP--IAN 175
Query: 287 LNSLQELDLSGNSFLGGQLSRNLGKLCNLRTMILSRNNISSEVSDFLDGLSECTNSILLE 346
L L L L+ N L L +L N I+ + ++ T L
Sbjct: 176 LTDLYSLSLNYNQIED---ISPLASLTSLHYFTAYVNQITD-----ITPVANMTR---LN 224
Query: 347 KLELRFNQFTGILPISLGSLKNLRHLVLWQNSFLGSIPPSIGNLTLLKELYLASNQMNGQ 406
L++ N+ T + L +L L L + N S ++ +LT LK L + SNQ++
Sbjct: 225 SLKIGNNKITDL--SPLANLSQLTWLEIGTNQI--SDINAVKDLTKLKMLNVGSNQIS-- 278
Query: 407 KISDSYQHLKNQTELRTLVLNKARISDTISDWFWQLSLTLDELDVAYNELRG 458
L N ++L +L LN ++ + + L+ L L ++ N +
Sbjct: 279 ----DISVLNNLSQLNSLFLNNNQLGNEDMEVIGGLT-NLTTLFLSQNHITD 325
|
| >4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347 | Back alignment and structure |
|---|
Score = 116 bits (293), Expect = 9e-29
Identities = 76/372 (20%), Positives = 132/372 (35%), Gaps = 46/372 (12%)
Query: 219 ELHLPNCNLPSLPLSFPSLNFASLQVLDLSNNDFNSTTPHWLFNITSLLCLDLGSNDLQG 278
L + + FP + A L + S+ L + +
Sbjct: 4 TLATLPAPINQI---FPDADLAEGIRAVLQKASVTDVVT--QEELESITKLVVAGEKVA- 57
Query: 279 DIPDGFASLNSLQELDLSGNSFLGGQLSRNLGKLCNLRTMILSRNNISSEVSDFLDGLSE 338
I G L +L+ L+L+GN L L L + + N I+ + L
Sbjct: 58 SIQ-GIEYLTNLEYLNLNGNQITD---ISPLSNLVKLTNLYIGTNKITD-----ISALQN 108
Query: 339 CTNSILLEKLELRFNQFTGILPISLGSLKNLRHLVLWQNSFLGSIPPSIGNLTLLKELYL 398
TN L +L L + + I L +L + L L N S + N+T L L +
Sbjct: 109 LTN---LRELYLNEDNISDI--SPLANLTKMYSLNLGANH-NLSDLSPLSNMTGLNYLTV 162
Query: 399 ASNQMNGQKISDSYQHLKNQTELRTLVLNKARISDTISDWFWQLSLTLDELDVAYNELRG 458
++ + D + N T+L +L LN +I D L+ +L N++
Sbjct: 163 TESK-----VKDV-TPIANLTDLYSLSLNYNQIEDISP--LASLT-SLHYFTAYVNQITD 213
Query: 459 RVPNSLGFNFPAKVDLSFNNFEGRLLLWSF-NVTKLYLRDNSFSGLIPNDIGQNLPFLTD 517
+ + + N L + +T L + N S +
Sbjct: 214 -ITPVANMTRLNSLKIGNNKITDLSPLANLSQLTWLEIGTNQISDINA------------ 260
Query: 518 LGNLKQLITLVISNNNLSGEIPLLFSNISFLYILDMSNNSLSGSTPESIGSLRTVKFLVL 577
+ +L +L L + +N +S +N+S L L ++NN L E IG L + L L
Sbjct: 261 VKDLTKLKMLNVGSNQISDISV--LNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFL 318
Query: 578 RNNYLSGKLPLS 589
N+++ PL+
Sbjct: 319 SQNHITDIRPLA 330
|
| >4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347 | Back alignment and structure |
|---|
Score = 116 bits (293), Expect = 9e-29
Identities = 73/327 (22%), Positives = 122/327 (37%), Gaps = 41/327 (12%)
Query: 107 PSLLQLKDLEYLDLSMNNFTGFQVPEFIGSLKELRYLNLSGSFFSGTIPQTLGNLSNLLY 166
+ L +LEYL+L+ N T + +L +L L + + T L NL+NL
Sbjct: 60 QGIEYLTNLEYLNLNGNQITDI---SPLSNLVKLTNLYIGTNKI--TDISALQNLTNLRE 114
Query: 167 LDLNNFLDQSNQI-DLEWLSGLSSLVYFNLGGADLSKAGAYWLEVFNKLHSFVELHLPNC 225
L LN + I D+ L+ L+ + NLG L + + L +
Sbjct: 115 LYLNE-----DNISDISPLANLTKMYSLNLGANHNLSD----LSPLSNMTGLNYLTVTES 165
Query: 226 NLPSLPLSFPSLNFASLQVLDLSNNDFNSTTPHWLFNITSLLCLDLGSNDLQGDIPDGFA 285
+ + P N L L L+ N +P L ++TSL N + P A
Sbjct: 166 KVKDVT---PIANLTDLYSLSLNYNQIEDISP--LASLTSLHYFTAYVNQITDITP--VA 218
Query: 286 SLNSLQELDLSGNSFLGGQLSRNLGKLCNLRTMILSRNNISSEVSDFLDGLSECTNSILL 345
++ L L + N L L L + + N IS ++ + + T L
Sbjct: 219 NMTRLNSLKIGNNKITD---LSPLANLSQLTWLEIGTNQISD-----INAVKDLTK---L 267
Query: 346 EKLELRFNQFTGILPISLGSLKNLRHLVLWQNSFLGSIPPSIGNLTLLKELYLASNQMNG 405
+ L + NQ + I ++ +L L L L N IG LT L L+L+ N +
Sbjct: 268 KMLNVGSNQISDISVLN--NLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHIT- 324
Query: 406 QKISDSYQHLKNQTELRTLVLNKARIS 432
+ L + +++ + I
Sbjct: 325 -----DIRPLASLSKMDSADFANQVIK 346
|
| >4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347 | Back alignment and structure |
|---|
Score = 116 bits (293), Expect = 1e-28
Identities = 86/410 (20%), Positives = 155/410 (37%), Gaps = 72/410 (17%)
Query: 175 QSNQI-DLEWLSGLSSLVYFNLGGADLSKAGAYWLEVFNKLHSFVELHLPNCNLPSLPLS 233
I + + L+ + L A ++ + +L S +L + + S+
Sbjct: 8 LPAPINQIFPDADLAEGIRAVLQKASVTD-----VVTQEELESITKLVVAGEKVASIQ-- 60
Query: 234 FPSLNFASLQVLDLSNNDFNSTTPHWLFNITSLLCLDLGSNDLQGDIPDGFASLNSLQEL 293
+L+ L+L+ N +P L N+ L L +G+N + +L +L+EL
Sbjct: 61 -GIEYLTNLEYLNLNGNQITDISP--LSNLVKLTNLYIGTNKIT--DISALQNLTNLREL 115
Query: 294 DLSGNSFLGGQLSRNLGKLCNLRTMILSRNNISSEVSDFLDGLSECTNSILLEKLELRFN 353
L+ ++ L L + ++ L N+ S++S LS T L L + +
Sbjct: 116 YLNEDNISD---ISPLANLTKMYSLNLGANHNLSDLS----PLSNMTG---LNYLTVTES 165
Query: 354 QFTGILPISLGSLKNLRHLVLWQNSFLGSIPPSIGNLTLLKELYLASNQMNGQKISDSYQ 413
+ + PI +L +L L L N + I P + +LT L NQ I+D
Sbjct: 166 KVKDVTPI--ANLTDLYSLSLNYNQ-IEDISP-LASLTSLHYFTAYVNQ-----ITDI-T 215
Query: 414 HLKNQTELRTLVLNKARISDTISDWFWQLSLTLDELDVAYNELRGRVPNSLGFNFPAKVD 473
+ N T L +L + +I+D LS L L++ N++ + A D
Sbjct: 216 PVANMTRLNSLKIGNNKITDLSP--LANLS-QLTWLEIGTNQIS---------DINAVKD 263
Query: 474 LSFNNFEGRLLLWSFNVTKLYLRDNSFSGLIPNDIGQNLPFLTDLGNLKQLITLVISNNN 533
L+ + L + N S + L NL QL +L ++NN
Sbjct: 264 LT-------------KLKMLNVGSNQISDISV------------LNNLSQLNSLFLNNNQ 298
Query: 534 LSGEIPLLFSNISFLYILDMSNNSLSGSTPESIGSLRTVKFLVLRNNYLS 583
L E + ++ L L +S N ++ P + SL + N +
Sbjct: 299 LGNEDMEVIGGLTNLTTLFLSQNHITDIRP--LASLSKMDSADFANQVIK 346
|
| >4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347 | Back alignment and structure |
|---|
Score = 51.8 bits (125), Expect = 3e-07
Identities = 21/97 (21%), Positives = 41/97 (42%), Gaps = 9/97 (9%)
Query: 107 PSLLQLKDLEYLDLSMNNFTGFQVPEFIGSLKELRYLNLSGSFFSGTIPQTLGNLSNLLY 166
++ L L+ L++ N + + +L +L L L+ + + +G L+NL
Sbjct: 259 NAVKDLTKLKMLNVGSNQISDI---SVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTT 315
Query: 167 LDLNNFLDQSNQI-DLEWLSGLSSLVYFNLGGADLSK 202
L L+ N I D+ L+ LS + + + K
Sbjct: 316 LFLSQ-----NHITDIRPLASLSKMDSADFANQVIKK 347
|
| >2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477 | Back alignment and structure |
|---|
Score = 121 bits (306), Expect = 1e-29
Identities = 67/295 (22%), Positives = 115/295 (38%), Gaps = 24/295 (8%)
Query: 114 DLEYLDLSMNNFTGFQVPEFIGSLKELRYLNLSGSFFSGTIPQTLGNLSNLLYLDLNNFL 173
+ LDL N EF L L L+ + S P NL NL L L +
Sbjct: 33 ETRLLDLGKNRIKTLNQDEFAS-FPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRS-- 89
Query: 174 DQSNQI---DLEWLSGLSSLVYFNLGGADLSKAGAYWLEVFNKLHSFVELHLPNCNLPSL 230
N++ L +GLS+L ++ + Y F L++ L + + +L +
Sbjct: 90 ---NRLKLIPLGVFTGLSNLTKLDISENKIVILLDYM---FQDLYNLKSLEVGDNDLVYI 143
Query: 231 P-LSFPSLNFASLQVLDLSNNDFNSTTPHWLFNITSLLCLDLGSNDLQGDIPDGFASLNS 289
+F LN SL+ L L + S L ++ L+ L L ++ F L
Sbjct: 144 SHRAFSGLN--SLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYR 201
Query: 290 LQELDLSGNSFLGGQLSRNLGKLCNLRTMILSRNNISSEVSDFLDGLSECTNSILLEKLE 349
L+ L++S +L ++ N NL ++ ++ N+++ + L L L
Sbjct: 202 LKVLEISHWPYL-DTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVY------LRFLN 254
Query: 350 LRFNQFTGILPISLGSLKNLRHLVLWQNSFLGSIPPSI-GNLTLLKELYLASNQM 403
L +N + I L L L+ + L L + P L L+ L ++ NQ+
Sbjct: 255 LSYNPISTIEGSMLHELLRLQEIQLVGGQ-LAVVEPYAFRGLNYLRVLNVSGNQL 308
|
| >2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477 | Back alignment and structure |
|---|
Score = 120 bits (303), Expect = 3e-29
Identities = 74/361 (20%), Positives = 129/361 (35%), Gaps = 52/361 (14%)
Query: 226 NLPSLPLSFPSLNFASLQVLDLSNNDFNSTTPHWLFNITSLLCLDLGSNDLQGDIPDG-F 284
++P P+ ++LDL N + + L L+L N + + G F
Sbjct: 22 RFVAVPEGIPT----ETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVS-AVEPGAF 76
Query: 285 ASLNSLQELDLSGNSFLGGQLSRN-LGKLCNLRTMILSRNNISSEVSDFLDGLSECTNSI 343
+L +L+ L L N + L NL + +S N I + L
Sbjct: 77 NNLFNLRTLGLRSNRL--KLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYN----- 129
Query: 344 LLEKLELRFNQFTGILPISLGSLKNLRHLVLWQNSFLGSIPP-SIGNLTLLKELYLASNQ 402
L+ LE+ N I + L +L L L + + L SIP ++ +L L L L
Sbjct: 130 -LKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCN-LTSIPTEALSHLHGLIVLRLRHLN 187
Query: 403 MNGQKISDSYQHLKNQTELRTLVLNKARISDTISDWFWQLSLTLDELDVAYNELRGRVPN 462
+ I D K L+ L ++ DT++ L L L + + L VP
Sbjct: 188 I--NAIRDY--SFKRLYRLKVLEISHWPYLDTMTPNCLYG-LNLTSLSITHCNLT-AVPY 241
Query: 463 SLGFNFPAKVDLSFNNFEGRLLLWSFNVTKLYLRDNSFSGLIPNDIGQNLPFLTDLGNLK 522
+ + L L N S + + L L
Sbjct: 242 LA-----------VRHLV--------YLRFLNLSYNPISTIEGSM----------LHELL 272
Query: 523 QLITLVISNNNLSGEIPLLFSNISFLYILDMSNNSLSGSTPESIGSLRTVKFLVLRNNYL 582
+L + + L+ P F +++L +L++S N L+ S+ ++ L+L +N L
Sbjct: 273 RLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSVGNLETLILDSNPL 332
Query: 583 S 583
+
Sbjct: 333 A 333
|
| >2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477 | Back alignment and structure |
|---|
Score = 120 bits (303), Expect = 3e-29
Identities = 70/301 (23%), Positives = 115/301 (38%), Gaps = 26/301 (8%)
Query: 108 SLLQLKDLEYLDLSMNNFTGFQVPEFIGSLKELRYLNLSGSFFSGTIPQTLGNLSNLLYL 167
LE L+L+ N + + F L LR L L + LSNL L
Sbjct: 51 EFASFPHLEELELNENIVSAVEPGAFNN-LFNLRTLGLRSNRLKLIPLGVFTGLSNLTKL 109
Query: 168 DLNNFLDQSNQI---DLEWLSGLSSLVYFNLGGADLSKAGAYWLEVFNKLHSFVELHLPN 224
D++ N+I L +L +G DL F+ L+S +L L
Sbjct: 110 DISE-----NKIVILLDYMFQDLYNLKSLEVGDNDLVYISH---RAFSGLNSLEQLTLEK 161
Query: 225 CNLPSLP-LSFPSLNFASLQVLDLSNNDFNSTTPHWLFNITSLLCLDLGSNDLQGDIPDG 283
CNL S+P + L+ L VL L + + N+ + + L L++ +
Sbjct: 162 CNLTSIPTEALSHLH--GLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPN 219
Query: 284 FASLNSLQELDLSGNSFLGGQLSRN-LGKLCNLRTMILSRNNISSEVSDFLDGLSECTNS 342
+L L ++ + + + L LR + LS N IS+ L L
Sbjct: 220 CLYGLNLTSLSITHCNL--TAVPYLAVRHLVYLRFLNLSYNPISTIEGSMLHELLR---- 273
Query: 343 ILLEKLELRFNQFTGILPISLGSLKNLRHLVLWQNSFLGSIPPSI-GNLTLLKELYLASN 401
L++++L Q + P + L LR L + N L ++ S+ ++ L+ L L SN
Sbjct: 274 --LQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQ-LTTLEESVFHSVGNLETLILDSN 330
Query: 402 Q 402
Sbjct: 331 P 331
|
| >2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477 | Back alignment and structure |
|---|
Score = 107 bits (270), Expect = 5e-25
Identities = 66/281 (23%), Positives = 107/281 (38%), Gaps = 23/281 (8%)
Query: 104 EISPSLLQ-LKDLEYLDLSMNNFTGFQVPEFIGSLKELRYLNLSGSFFSGTIPQTLGNLS 162
+ P L +L L L N + F G L L L++S + + +L
Sbjct: 70 AVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTG-LSNLTKLDISENKIVILLDYMFQDLY 128
Query: 163 NLLYLDL-NNFLDQSNQIDLEWLSGLSSLVYFNLGGADLSKAGAYWLEVFNKLHSFVELH 221
NL L++ +N L I SGL+SL L +L+ + LH + L
Sbjct: 129 NLKSLEVGDNDL---VYISHRAFSGLNSLEQLTLEKCNLTSIPTEA---LSHLHGLIVLR 182
Query: 222 LPNCNLPSLP-LSFPSLNFASLQVLDLSNNDFNSTTPHWLFNITSLLCLDLGSNDLQGDI 280
L + N+ ++ SF L L+VL++S+ + T +L L + +L
Sbjct: 183 LRHLNINAIRDYSFKRL--YRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVP 240
Query: 281 PDGFASLNSLQELDLSGN--SFLGGQLSRNLGKLCNLRTMILSRNNISSEVSDFLDGLSE 338
L L+ L+LS N S + G + L L+ + L ++ GL+
Sbjct: 241 YLAVRHLVYLRFLNLSYNPISTIEGSMLHELL---RLQEIQLVGGQLAVVEPYAFRGLNY 297
Query: 339 CTNSILLEKLELRFNQFTGILPISLGSLKNLRHLVLWQNSF 379
L L + NQ T + S+ NL L+L N
Sbjct: 298 ------LRVLNVSGNQLTTLEESVFHSVGNLETLILDSNPL 332
|
| >3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487 | Back alignment and structure |
|---|
Score = 111 bits (278), Expect = 4e-26
Identities = 59/497 (11%), Positives = 132/497 (26%), Gaps = 75/497 (15%)
Query: 110 LQLKDLEYLDLSMNNFTGFQVPEFIGSLKELRYLNLSGSFFSGTIPQTLGNLSNLLYLDL 169
+ ++ ++ S ++ L+LSG+ S L + L L+L
Sbjct: 7 QNGNRYKIEKVTDSSLKQAL-ASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNL 65
Query: 170 NNFLDQSNQI-DLEWLSGLSSLVYFNLGGADLSKAGAYWLEVFNKLHSFVELHLPNCNLP 228
++ N + + L LS+L +L N + +
Sbjct: 66 SS-----NVLYETLDLESLSTLRTLDLNN--------------NYVQELLVGP------- 99
Query: 229 SLPLSFPSLNFASLQVLDLSNNDFNSTTPHWLFNITSLLCLDLGSNDLQGDIPDGFASLN 288
S++ L +NN+ + + + L +N + +
Sbjct: 100 ------------SIETLHAANNNISRVSCSRG---QGKKNIYLANNKITMLRDLDEGCRS 144
Query: 289 SLQELDLSGNSFLGGQLSRNLGKLCNLRTMILSRNNISSEVSDFLDGLSECTNSILLEKL 348
+Q LDL N + L + L N I + L+ L
Sbjct: 145 RVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYD--------VKGQVVFAKLKTL 196
Query: 349 ELRFNQFTGILPISLGSLKNLRHLVLWQNSFLGSIPPSIGNLTLLKELYLASNQMNGQKI 408
+L N+ + S + + L N L I ++ L+ L N + +
Sbjct: 197 DLSSNKLAFM-GPEFQSAAGVTWISLRNNK-LVLIEKALRFSQNLEHFDLRGNGFHCGTL 254
Query: 409 SDSYQHLKNQTELRTLVLNKARISDTISDWFWQLSLTLDELDVAYNELRGRVPNSLGF-- 466
D + + ++T+ + ++ + +L + L
Sbjct: 255 RDFFSKNQR---VQTVAKQTVKKLTGQNEEECTVPTLGHYGAYCCEDLPAPFADRLIALK 311
Query: 467 ---NFPAKVDLSFNNFEGRLLLWSFNVTKLYLRDNSFSGLIPNDIGQNLPFLTDLGNLKQ 523
+ S ++ + + + +
Sbjct: 312 RKEHALLSGQGSETERLECERENQARQREIDALKEQYR-TVIDQVTLRKQ---------A 361
Query: 524 LITLVISNNNLSGEIPLLFS---NISFLYILDMSNNSLSGSTPESIGSLRTVKFLVLRNN 580
ITL L ++ + + L + E L+ ++ +V R
Sbjct: 362 KITLEQKKKALDEQVSNGRRAHAELDGTLQQAVGQIELQHA-TEEQSPLQLLRAIVKRYE 420
Query: 581 YLSGKLPLSLKNCTFQE 597
+ + N
Sbjct: 421 EMYVEQQSVQNNAIRDW 437
|
| >3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487 | Back alignment and structure |
|---|
Score = 97.6 bits (243), Expect = 1e-21
Identities = 55/363 (15%), Positives = 103/363 (28%), Gaps = 36/363 (9%)
Query: 236 SLNFASLQVLDLSNNDFNSTTPHWLFNITSLLCLDLGSNDLQGDIPDGFASLNSLQELDL 295
N ++ ++++ + ++ LDL N L A L+ L+L
Sbjct: 6 KQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNL 65
Query: 296 SGNSFLGGQLSRNLGKLCNLRTMILSRNNISSEVSDFLDGLSECTNSILLEKLELRFNQF 355
S N + +L L LRT+ L+ N + L + +E L N
Sbjct: 66 SSNVLYE---TLDLESLSTLRTLDLNNNYVQE--------LLVGPS---IETLHAANNNI 111
Query: 356 TGILPISLGSLKNLRHLVLWQNSFLGSIPPSIGNLTLLKELYLASNQMNGQKISDSYQHL 415
+ +S + +++ L N G + ++ L L N+++ ++
Sbjct: 112 SR---VSCSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASS 168
Query: 416 KNQTELRTLVLNKARISDTISDWFWQLSLTLDELDVAYNELRGRVPNSLGFNFPAKVDLS 475
L L L I D + L LD++ N+L P + L
Sbjct: 169 DT---LEHLNLQYNFIYDVKGQVVFA---KLKTLDLSSNKLAFMGPEFQSAAGVTWISLR 222
Query: 476 FNNFEG--RLLLWSFNVTKLYLRDNSFSGLIPNDIGQNLPFLTDLGNLKQLITLVISNNN 533
N + L +S N+ LR N F D + + +
Sbjct: 223 NNKLVLIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTV-----------AKQT 271
Query: 534 LSGEIPLLFSNISFLYILDMSNNSLSGSTPESIGSLRTVKFLVLRNNYLSGKLPLSLKNC 593
+ + + L +K G L+
Sbjct: 272 VKKLTGQNEEECTVPTLGHYGAYCCEDLPAPFADRLIALKRKEHALLSGQGSETERLECE 331
Query: 594 TFQ 596
Sbjct: 332 REN 334
|
| >3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487 | Back alignment and structure |
|---|
Score = 95.3 bits (237), Expect = 6e-21
Identities = 54/427 (12%), Positives = 127/427 (29%), Gaps = 34/427 (7%)
Query: 154 IPQTLGNLSNLLYLDLNNFLDQSNQIDLEWLSGLSSLVYFNLGGADLSKAGAYWLEVFNK 213
I + N + + + Q ++ +L G LS+ A
Sbjct: 2 IHEIKQNGNRYKIEKVTD--SSLKQALASLRQSAWNVKELDLSGNPLSQISA---ADLAP 56
Query: 214 LHSFVELHLPNCNLPSLPLSFPSLNFASLQVLDLSNNDFNSTTPHWLFNITSLLCLDLGS 273
L+L + L + ++L+ LDL+NN L S+ L +
Sbjct: 57 FTKLELLNLSSNVLYETL---DLESLSTLRTLDLNNNYVQE-----LLVGPSIETLHAAN 108
Query: 274 NDLQGDIPDGFASLNSLQELDLSGNSFLGGQLSRNLGKLCNLRTMILSRNNISSEVSDFL 333
N++ + + + L+ N + + G ++ + L N I + +
Sbjct: 109 NNIS-RVSCS--RGQGKKNIYLANNK-ITMLRDLDEGCRSRVQYLDLKLNEIDT-----V 159
Query: 334 DGLSECTNSILLEKLELRFNQFTGILPISLGSLKNLRHLVLWQNSFLGSIPPSIGNLTLL 393
+ +S LE L L++N + + L+ L L N L + P + +
Sbjct: 160 NFAELAASSDTLEHLNLQYNFIYDVKGQVV--FAKLKTLDLSSNK-LAFMGPEFQSAAGV 216
Query: 394 KELYLASNQMNGQKISDSYQHLKNQTELRTLVLNKARISDTISDWFWQLSLTLDELDVAY 453
+ L +N++ I + + +N L L F+ + + +
Sbjct: 217 TWISLRNNKL--VLIEKALRFSQN---LEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQT 271
Query: 454 NELRGRVPNSLGFNFPAKVDLSFNNFEGRLLLWSFNVTKLYLRDNSFSGLIPNDIGQNLP 513
+ + N P E ++ + L ++++ ++ +
Sbjct: 272 VK-KLTGQNEEECTVPTLGHYGAYCCEDLPAPFADRLIALKRKEHALLSGQGSETER--- 327
Query: 514 FLTDLGNLKQLITLVISNNNLSGEIPLLFSNISFLYILDMSNNSLSGSTPESIGSLRTVK 573
+ N + + I + L+ +L + +
Sbjct: 328 LECERENQARQREIDALKEQYRTVIDQVTLRKQAKITLEQKKKALDEQVSNGRRAHAELD 387
Query: 574 FLVLRNN 580
+ +
Sbjct: 388 GTLQQAV 394
|
| >3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487 | Back alignment and structure |
|---|
Score = 94.5 bits (235), Expect = 1e-20
Identities = 60/386 (15%), Positives = 99/386 (25%), Gaps = 29/386 (7%)
Query: 108 SLLQLKDLEYLDLSMNNFTGFQVPEFIGSLKELRYLNLSGSFFSGTIPQTLGNLSNLLYL 167
L LE L+LS N + + SL LR L+L+ ++ L ++ L
Sbjct: 53 DLAPFTKLELLNLSSNVLY--ETLDL-ESLSTLRTLDLNNNYVQ-----ELLVGPSIETL 104
Query: 168 DLNNFLDQSNQIDLEWLSGLSSLVYFNLGGADLSKAGAYWLEVFNKLHSFVELHLPNCNL 227
N N I S L ++ L L +
Sbjct: 105 HAAN-----NNISRVSCSRGQGKKNIYLANNKITMLRD---LDEGCRSRVQYLDLKLNEI 156
Query: 228 PSLPLSFPSLNFASLQVLDLSNNDFNSTTPHWLFNITSLLCLDLGSNDLQGDIPDGFASL 287
++ + + + +L+ L+L N L LDL SN L + F S
Sbjct: 157 DTVNFAELAASSDTLEHLNLQYNFIYDVKG--QVVFAKLKTLDLSSNKLA-FMGPEFQSA 213
Query: 288 NSLQELDLSGNSFLGGQLSRNLGKLCNLRTMILSRNNISSEVSDFLDGLSECTNSILLEK 347
+ + L N + + L NL L N
Sbjct: 214 AGVTWISLRNNKL--VLIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSK-------NQRV 264
Query: 348 LELRFNQFTGILPISLGSLKNLRHLVLWQNSFLGSIPPSIGNLTLLKELYLASNQMNGQK 407
+ + + P L LK A G +
Sbjct: 265 QTVAKQTVKKLTGQNEEECTVPTLGHYGAYCCEDLPAPFADRLIALKRKEHALLSGQGSE 324
Query: 408 ISDSYQHLKNQTELRTLVLNKARISDTISDWFWQLSLTLDELDVAYNELRGRVPNSLGFN 467
+NQ R + K + I + L+ L +V N +
Sbjct: 325 TERLECERENQARQREIDALKEQYRTVIDQVTLRKQA-KITLEQKKKALDEQVSNGRRAH 383
Query: 468 FPAKVDLSFNNFEGRLLLWSFNVTKL 493
L + L + + L
Sbjct: 384 AELDGTLQQAVGQIELQHATEEQSPL 409
|
| >3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487 | Back alignment and structure |
|---|
Score = 73.3 bits (180), Expect = 6e-14
Identities = 40/350 (11%), Positives = 96/350 (27%), Gaps = 43/350 (12%)
Query: 108 SLLQLKDLEYLDLSMNNFTGFQVPEFIGSLKELRYLNLSGSFFSGTIPQTLGNLSNLLYL 167
++YLDL +N E S L +LNL +F + + + L L
Sbjct: 139 DEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIY-DVKGQV-VFAKLKTL 196
Query: 168 DLNNFLDQSNQIDLEWLSGLSSLVYFNLGGADLSKAGAYWLEVFNKLHSFVELHLPNCNL 227
DL++ N++ ++ F + L N L
Sbjct: 197 DLSS-----NKL--AFMG-----------------------PEFQSAAGVTWISLRNNKL 226
Query: 228 PSLPLSFPSLNFASLQVLDLSNNDFNSTTPHWLFNITSLLCLDLGSNDLQGDIPDGFASL 287
+ + +L+ DL N F+ T F+ + + ++
Sbjct: 227 VLIEKALRFSQ--NLEHFDLRGNGFHCGTLRDFFSKNQRV-QTVAKQTVKKLTGQNEEEC 283
Query: 288 NSLQELDLSGNSFLGGQLSRNLGKLCNLRTMILSRNNISSEVSDFLDGLSECTNSILLEK 347
+ +L L+ + + ++ L+ E +
Sbjct: 284 TVPTLGHYGAYC-CEDLPAPFADRLIALKRKEHALLSGQGSETERLECERENQAR--QRE 340
Query: 348 LELRFNQFTGILPISLGSLKNLRHLVLWQNSFLGSIPPSIGNLTLLKELYLASNQMNGQK 407
++ Q+ ++ + L + + + L + +
Sbjct: 341 IDALKEQYRTVIDQVTLRKQAKITLEQKKKALDEQVSNGRRAHAELDGTLQQAVGQIELQ 400
Query: 408 ISDSYQHLKNQTELRTLVLNKARISDTISDWFWQLSLTLDELDVAYNELR 457
+ Q+ L+ L R + + + + + D+ ++
Sbjct: 401 -----HATEEQSPLQLLRAIVKRYEEMYVEQQSVQNNAIRDWDMYQHKET 445
|
| >3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487 | Back alignment and structure |
|---|
Score = 67.6 bits (165), Expect = 5e-12
Identities = 25/226 (11%), Positives = 59/226 (26%), Gaps = 7/226 (3%)
Query: 104 EISPSLLQLKDLEYLDLSMNNFTGFQVPEFIGSLKELRYLNLSG-SFFSGTIPQTLGNLS 162
+ P + ++ L N + + + + L + +L G F GT+
Sbjct: 205 FMGPEFQSAAGVTWISLRNNKLV--LIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQ 262
Query: 163 NLLYLDLNNFLDQSNQIDLEWLSGLSSLVYFNLGGADLSKAGAYWLEVFNKLHSFVELHL 222
+ + ++ + + + G A + + L L
Sbjct: 263 RVQTVAKQTV----KKLTGQNEEECTVPTLGHYGAYCCEDLPAPFADRLIALKRKEHALL 318
Query: 223 PNCNLPSLPLSFPSLNFASLQVLDLSNNDFNSTTPHWLFNITSLLCLDLGSNDLQGDIPD 282
+ L N A + +D + + + + L+ L + +
Sbjct: 319 SGQGSETERLECERENQARQREIDALKEQYRTVIDQVTLRKQAKITLEQKKKALDEQVSN 378
Query: 283 GFASLNSLQELDLSGNSFLGGQLSRNLGKLCNLRTMILSRNNISSE 328
G + L + Q + L I+ R
Sbjct: 379 GRRAHAELDGTLQQAVGQIELQHATEEQSPLQLLRAIVKRYEEMYV 424
|
| >4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328 | Back alignment and structure |
|---|
Score = 108 bits (271), Expect = 5e-26
Identities = 55/279 (19%), Positives = 83/279 (29%), Gaps = 28/279 (10%)
Query: 131 PEFIGSLKELRYLNLSGSFFSGTIPQTLGNLSNLLYLDLNNFLDQSNQIDLEWLSGLSSL 190
L GS L D N + + ++
Sbjct: 5 HHHHHHSSGRENLYFQGSTALRPYHDVLSQWQRHYNADRNRW------HSAWRQANSNNP 58
Query: 191 VYFNLGGADLSKAGAYWLEVFNKLHSFVELHLPNCNLPSLPLSFPSLNFASLQVLDLSNN 250
G L + V L L + LP P + LQ + +
Sbjct: 59 QIETRTGRALKATADLLEDA--TQPGRVALELRSVPLPQFPDQA--FRLSHLQHMTIDAA 114
Query: 251 DFNSTTPHWLFNITSLLCLDLGSNDLQGDIPDGFASLNSLQELDLSGNSFLG-------- 302
P + L L L N L+ +P ASLN L+EL + L
Sbjct: 115 GLME-LPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLRELSIRACPELTELPEPLAS 172
Query: 303 GQLSRNLGKLCNLRTMILSRNNISSEVSDFLDGLSECTNSILLEKLELRFNQFTGILPIS 362
S L NL+++ L I S ++ N L+ L++R + + L +
Sbjct: 173 TDASGEHQGLVNLQSLRLEWTGIRS----LPASIANLQN---LKSLKIRNSPLSA-LGPA 224
Query: 363 LGSLKNLRHLVLWQNSFLGSIPPSIGNLTLLKELYLASN 401
+ L L L L + L + PP G LK L L
Sbjct: 225 IHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDC 263
|
| >4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328 | Back alignment and structure |
|---|
Score = 107 bits (269), Expect = 1e-25
Identities = 46/313 (14%), Positives = 89/313 (28%), Gaps = 57/313 (18%)
Query: 104 EISPSLLQLKDLEYLDLSMNNFTGFQVPEFIGSLKE--LRYLNLSGSFFSGTIPQTLGNL 161
+ + + + + + + L L P L
Sbjct: 47 HSAWRQANSNNPQIETRTGRALK--ATADLLEDATQPGRVALELRSVPLP-QFPDQAFRL 103
Query: 162 SNLLYLDLNNFLDQSNQIDLEWLSGLSSLVYFNLGGADLSKAGAYWLEVFNKLHSFVELH 221
S+L ++ ++ +GL L + + L
Sbjct: 104 SHLQHMTIDA-------------AGLMEL-----------------PDTMQQFAGLETLT 133
Query: 222 LPNCNLPSLPLSFPSLNFASLQVLDLSNND---------FNSTTPHWLFNITSLLCLDLG 272
L L +LP S SLN L+ L + ++ + +L L L
Sbjct: 134 LARNPLRALPASIASLN--RLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLE 191
Query: 273 SNDLQGDIPDGFASLNSLQELDLSGNSFLGGQLSRNLGKLCNLRTMILSRNNISSEVSDF 332
++ +P A+L +L+ L + + L + L L + L
Sbjct: 192 WTGIR-SLPASIANLQNLKSLKIRNSPLS--ALGPAIHHLPKLEELDLRGCTALRNYPPI 248
Query: 333 LDGLSECTNSILLEKLELR-FNQFTGILPISLGSLKNLRHLVLWQNSFLGSIPPSIGNLT 391
G + L++L L+ + LP+ + L L L L L +P I L
Sbjct: 249 FGGRAP------LKRLILKDCSNLL-TLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLP 301
Query: 392 LLKELYLASNQMN 404
+ + +
Sbjct: 302 ANCIILVPPHLQA 314
|
| >4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328 | Back alignment and structure |
|---|
Score = 103 bits (258), Expect = 3e-24
Identities = 52/306 (16%), Positives = 98/306 (32%), Gaps = 31/306 (10%)
Query: 107 PSLLQLKDLEYLDLSMNNFTGFQVPEFIGSLKELRYLNLSGSFFSGTIPQTLGNLSNLLY 166
E L + + + + + + N +N
Sbjct: 6 HHHHHSSGRENLYFQGSTALR-PYHDVLSQWQRHYNADRNRW----HSAWRQANSNNPQI 60
Query: 167 LDLNNFLDQSNQIDLEWLSGLSSLVYFNLGGADLSKAGAYWLEVFNKLHSFVELHLPNCN 226
++ LE + V L L + + + +L + +
Sbjct: 61 ETRTGRALKATADLLEDAT-QPGRVALELRSVPLPQ----FPDQAFRLSHLQHMTIDAAG 115
Query: 227 LPSLPLSFPSLNFASLQVLDLSNNDFNSTTPHWLFNITSLLCLDLGSNDLQGDIPDGFAS 286
L LP + L+ L L+ N P + ++ L L + + ++P+ AS
Sbjct: 116 LMELPDTMQQFA--GLETLTLARNPL-RALPASIASLNRLRELSIRACPELTELPEPLAS 172
Query: 287 ---------LNSLQELDLSGNSFLGGQLSRNLGKLCNLRTMILSRNNISSEVSDFLDGLS 337
L +LQ L L L ++ L NL+++ + + +S+ +
Sbjct: 173 TDASGEHQGLVNLQSLRLEWTGIR--SLPASIANLQNLKSLKIRNSPLSA----LGPAIH 226
Query: 338 ECTNSILLEKLELRFNQFTGILPISLGSLKNLRHLVLWQNSFLGSIPPSIGNLTLLKELY 397
LE+L+LR P G L+ L+L S L ++P I LT L++L
Sbjct: 227 HLPK---LEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLD 283
Query: 398 LASNQM 403
L
Sbjct: 284 LRGCVN 289
|
| >4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328 | Back alignment and structure |
|---|
Score = 100 bits (251), Expect = 2e-23
Identities = 58/377 (15%), Positives = 109/377 (28%), Gaps = 91/377 (24%)
Query: 209 EVFNKLHSFVELHLPNCNLPSLPLSFPSLNFASLQVLDLSNNDFNSTTPHWLFNITS--L 266
+ L + + + N + N + Q+ + T L + T
Sbjct: 27 PYHDVLSQWQRHYNADRNRWHSAWRQANSN--NPQIETRTGRAL-KATADLLEDATQPGR 83
Query: 267 LCLDLGSNDLQGDIPDGFASLNSLQELDLSGNSFLGGQLSRNLGKLCNLRTMILSRNNIS 326
+ L+L S L PD L+ LQ + + +L + + L T+ L+RN +
Sbjct: 84 VALELRSVPLP-QFPDQAFRLSHLQHMTIDAAGL--MELPDTMQQFAGLETLTLARNPLR 140
Query: 327 SEVSDFLDGLSECTNSILLEKLELRFNQFTGILPISLGSLKNLRHLVLWQNSFLGSIPPS 386
+ LP S+ SL LR L + L +P
Sbjct: 141 A-------------------------------LPASIASLNRLRELSIRACPELTELPEP 169
Query: 387 IGNLTLLKELYLASNQMNGQKISDSYQHLKNQTELRTLVLNKARISDTISDWFWQLSLTL 446
+ + E N L++L L I ++ L L
Sbjct: 170 LASTDASGEHQGLVN-------------------LQSLRLEWTGIR-SLPASIANLQ-NL 208
Query: 447 DELDVAYNELRGRVPNSLGFNFPAKVDLSFNNFEGRLLLWSFNVTKLYLRDNSFSGLIPN 506
L + + L + ++ L + +L LR + P
Sbjct: 209 KSLKIRNSPLSA-LGPAIH-------HLP-------------KLEELDLRGCTALRNYPP 247
Query: 507 DIGQNLPFLTDLGNLKQLITLVISNNNLSGEIPLLFSNISFLYILDMSNNSLSGSTPESI 566
G L L++ + + +PL ++ L LD+ P I
Sbjct: 248 IFG----------GRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLI 297
Query: 567 GSLRTVKFLVLRNNYLS 583
L +++ + +
Sbjct: 298 AQLPANCIILVPPHLQA 314
|
| >4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328 | Back alignment and structure |
|---|
Score = 100 bits (250), Expect = 3e-23
Identities = 56/349 (16%), Positives = 105/349 (30%), Gaps = 57/349 (16%)
Query: 254 STTPHWLFNITSLLCLDLGSNDLQGDIPDGFASLNSLQELDLSGNSFLGGQLSRNLGKLC 313
++ H + + L + D + D +
Sbjct: 2 GSSHHHHHHSSGRENLYFQGSTALRPYHDVLSQWQRHYNADRNRWHSAW-----RQANSN 56
Query: 314 NLRTMILSRNNISSEVSDFLDGLSECTNSILLEKLELRFNQFTGILPISLGSLKNLRHLV 373
N + + + + D L + T LELR P L +L+H+
Sbjct: 57 NPQIETRTGRALKA----TADLLEDAT-QPGRVALELRSVPLP-QFPDQAFRLSHLQHMT 110
Query: 374 LWQNSFLGSIPPSIGNLTLLKELYLASNQMNGQKISDSYQHLKNQTELRTLVLNKARISD 433
+ L +P ++ L+ L LA N + + + S L LR L +
Sbjct: 111 IDAAG-LMELPDTMQQFAGLETLTLARNPL--RALPASIASLNR---LRELSIRACPELT 164
Query: 434 TISDWFWQLSLT--------LDELDVAYNELRGRVPNSLGFNFPAKVDLSFNNFEGRLLL 485
+ + + L L + + +R +P S+ +L
Sbjct: 165 ELPEPLASTDASGEHQGLVNLQSLRLEWTGIR-SLPASIA-------NLQ---------- 206
Query: 486 WSFNVTKLYLRDNSFSGLIPNDIGQNLPFLTDLGNLKQLITLVISNNNLSGEIPLLFSNI 545
N+ L +R++ S L I +L +L L + P +F
Sbjct: 207 ---NLKSLKIRNSPLSAL-GPAIH----------HLPKLEELDLRGCTALRNYPPIFGGR 252
Query: 546 SFLYILDMSNNSLSGSTPESIGSLRTVKFLVLRNNYLSGKLPLSLKNCT 594
+ L L + + S + P I L ++ L LR +LP +
Sbjct: 253 APLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLP 301
|
| >4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328 | Back alignment and structure |
|---|
Score = 56.1 bits (136), Expect = 1e-08
Identities = 31/167 (18%), Positives = 53/167 (31%), Gaps = 17/167 (10%)
Query: 104 EISPSLLQLKDLEYLDLSMNNFTGFQVPEFIGSLKELRYLNLSGSFFSGTIPQTLGNLSN 163
+ S L +L+ L L +P I +L+ L+ L + S S + + +L
Sbjct: 174 DASGEHQGLVNLQSLRLEWTGIR--SLPASIANLQNLKSLKIRNSPLS-ALGPAIHHLPK 230
Query: 164 LLYLDLNNFLDQSNQIDL--EWLSGLSSLVYFNLGGADLSKAGAYWL-EVFNKLHSFVEL 220
L LDL + G + L L L ++L +L
Sbjct: 231 LEELDLRGC----TALRNYPPIFGGRAPLKRLILKDCSNLLT----LPLDIHRLTQLEKL 282
Query: 221 HLPNC-NLPSLPLSFPSLNFASLQVLDLSNNDFNSTTPHWLFNITSL 266
L C NL LP L + ++ + + H +
Sbjct: 283 DLRGCVNLSRLPSLIAQLP--ANCIILVPPHLQAQLDQHRPVARPAE 327
|
| >4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328 | Back alignment and structure |
|---|
Score = 47.2 bits (113), Expect = 7e-06
Identities = 32/219 (14%), Positives = 58/219 (26%), Gaps = 41/219 (18%)
Query: 380 LGSIPPSIGNLTLLKELYLASNQMNGQKISDSYQHLKNQTELRTLVLNKARISDTISDWF 439
+GS + + + LY + + + L N+ +
Sbjct: 1 MGSSHHHHHHSSGRENLYFQGST----ALRPYHDVLSQWQRHYNADRNR------WHSAW 50
Query: 440 WQLSLTLDELDVAYNELRGRVPNSLGFNFPAKVDLSFNNFEGRLLLWSFNVTKLYLRDNS 499
Q + +++ + L L LR
Sbjct: 51 RQANSNNPQIETRTGRALKATADLLED------------------ATQPGRVALELRSVP 92
Query: 500 FSGLIPNDIGQNLPFLTDLGNLKQLITLVISNNNLSGEIPLLFSNISFLYILDMSNNSLS 559
P+ L L + I L E+P + L L ++ N L
Sbjct: 93 LPQF-PDQAF----------RLSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLR 140
Query: 560 GSTPESIGSLRTVKFLVLRNNYLSGKLPLSLKNCTFQES 598
+ P SI SL ++ L +R +LP L +
Sbjct: 141 -ALPASIASLNRLRELSIRACPELTELPEPLASTDASGE 178
|
| >3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317 | Back alignment and structure |
|---|
Score = 105 bits (265), Expect = 3e-25
Identities = 49/318 (15%), Positives = 95/318 (29%), Gaps = 53/318 (16%)
Query: 105 ISPSLLQLKDLEYLDLSMNNFTGFQVPEFIGSLKELRYLNLSGSFFSGTIPQTLGNLSNL 164
I + ++ ++ S ++ L+LSG+ S L + L
Sbjct: 2 IHEIKQNGNRYKIEKVTDSSLKQAL-ASLRQSAWNVKELDLSGNPLSQISAADLAPFTKL 60
Query: 165 LYLDLNNFLDQSNQI-DLEWLSGLSSLVYFNLGGADLSKAGAYWLEVFNKLHSFVELHLP 223
L+L++ N + + L LS+L +L N +
Sbjct: 61 ELLNLSS-----NVLYETLDLESLSTLRTLDLNN--------------NYVQE------- 94
Query: 224 NCNLPSLPLSFPSLNFASLQVLDLSNNDFNSTTPHWLFNITSLLCLDLGSNDLQGDIPDG 283
L P S++ L +NN+ + + + L +N +
Sbjct: 95 ---LLVGP---------SIETLHAANNNISRVSCSRG---QGKKNIYLANNKITMLRDLD 139
Query: 284 FASLNSLQELDLSGNSFLGGQLSRNLGKLCNLRTMILSRNNISSEVSDFLDGLSECTNSI 343
+ +Q LDL N + L + L N I + G
Sbjct: 140 EGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYD-----VKGQVVFAK-- 192
Query: 344 LLEKLELRFNQFTGILPISLGSLKNLRHLVLWQNSFLGSIPPSIGNLTLLKELYLASNQM 403
L+ L+L N+ + S + + L N L I ++ L+ L N
Sbjct: 193 -LKTLDLSSNKLAFM-GPEFQSAAGVTWISLRNNK-LVLIEKALRFSQNLEHFDLRGNGF 249
Query: 404 NGQKISDSYQHLKNQTEL 421
+ + D + + +
Sbjct: 250 HCGTLRDFFSKNQRVQTV 267
|
| >3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317 | Back alignment and structure |
|---|
Score = 98.5 bits (246), Expect = 8e-23
Identities = 56/359 (15%), Positives = 107/359 (29%), Gaps = 59/359 (16%)
Query: 229 SLPLSFPSLNFASLQVLDLSNNDFNSTTPHWLFNITSLLCLDLGSNDLQGDIPDGFASLN 288
++ + N ++ ++++ + ++ LDL N L A
Sbjct: 1 AIHEIKQNGN--RYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFT 58
Query: 289 SLQELDLSGNSFLGGQLSRNLGKLCNLRTMILSRNNISSEVSDFLDGLSECTNSILLEKL 348
L+ L+LS N + +L L LRT+ L+ N + L + +E L
Sbjct: 59 KLELLNLSSNVLYE---TLDLESLSTLRTLDLNNNYVQE--------LLVGPS---IETL 104
Query: 349 ELRFNQFTGILPISLGSLKNLRHLVLWQNSFLGSIPPSIGNLTLLKELYLASNQMNGQKI 408
N + +S + +++ L N G + ++ L L N+++
Sbjct: 105 HAANNNISR---VSCSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNF 161
Query: 409 SDSYQHLKNQTELRTLVLNKARISDTISDWFWQLSLTLDELDVAYNELRGRVPNSLGFNF 468
++ L L L I D + L LD++ N+L
Sbjct: 162 AELAASSDT---LEHLNLQYNFIYDVKGQVVFA---KLKTLDLSSNKLA----------- 204
Query: 469 PAKVDLSFNNFEGRLLLWSFNVTKLYLRDNSFSGLIPNDIGQNLPFLTDLGNLKQLITLV 528
+ F + VT + LR+N I + + L
Sbjct: 205 --FMGPEFQSAA--------GVTWISLRNNKLVL-IEKAL----------RFSQNLEHFD 243
Query: 529 ISNNNLSGEIPLLFSNISFLYILDMSNNSLSGSTPESIGSLRTVKFLVLRNNYLSGKLP 587
+ N L + ++ ++ TV L Y LP
Sbjct: 244 LRGNGFH-CGTLRDFFSKNQRVQTVAKQTVK-KLTGQNEEECTVPTLGHYGAYCCEDLP 300
|
| >3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317 | Back alignment and structure |
|---|
Score = 79.6 bits (197), Expect = 2e-16
Identities = 47/293 (16%), Positives = 77/293 (26%), Gaps = 30/293 (10%)
Query: 108 SLLQLKDLEYLDLSMNNFTGFQVPEFIGSLKELRYLNLSGSFFSGTIPQTLGNLSNLLYL 167
L LE L+LS N + + SL LR L+L+ ++ L ++ L
Sbjct: 53 DLAPFTKLELLNLSSNVLY--ETLDL-ESLSTLRTLDLNNNYVQ-----ELLVGPSIETL 104
Query: 168 DLNNFLDQSNQIDLEWLSGLSSLVYFNLGGADLSKAGAYWLEVFNKLHSFVELHLPNCNL 227
N N I S L ++ L L +
Sbjct: 105 HAAN-----NNISRVSCSRGQGKKNIYLANNKITMLRD---LDEGCRSRVQYLDLKLNEI 156
Query: 228 PSLPLSFPSLNFASLQVLDLSNNDFNSTTPHWLFNITSLLCLDLGSNDLQGDIPDGFASL 287
++ + + + +L+ L+L N L LDL SN L + F S
Sbjct: 157 DTVNFAELAASSDTLEHLNLQYNFIYDVKG--QVVFAKLKTLDLSSNKLA-FMGPEFQSA 213
Query: 288 NSLQELDLSGNSFLGGQLSRNLGKLCNLRTMILSRNNISSEVSDFLDGLSECTNSILLEK 347
+ + L N + + L NL L N
Sbjct: 214 AGVTWISLRNNKL--VLIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSK-------NQRV 264
Query: 348 LELRFNQFTGILPISLGSLKNLRHLVLWQNSFLGSIPPSIG-NLTLLKELYLA 399
+ L + L + +P L L +
Sbjct: 265 QTVAKQTVKK-LTGQNEEECTVPTLGHYGAYCCEDLPAPFADRLIALGHHHHH 316
|
| >3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317 | Back alignment and structure |
|---|
Score = 43.4 bits (103), Expect = 1e-04
Identities = 15/70 (21%), Positives = 30/70 (42%)
Query: 520 NLKQLITLVISNNNLSGEIPLLFSNISFLYILDMSNNSLSGSTPESIGSLRTVKFLVLRN 579
N + +++++L + L + + LD+S N LS + + ++ L L +
Sbjct: 8 NGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSS 67
Query: 580 NYLSGKLPLS 589
N L L L
Sbjct: 68 NVLYETLDLE 77
|
| >3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455 | Back alignment and structure |
|---|
Score = 106 bits (266), Expect = 1e-24
Identities = 82/384 (21%), Positives = 130/384 (33%), Gaps = 51/384 (13%)
Query: 227 LPSLPLSFPSLNFASLQVLDLSNNDFNSTTPHWLFNITSLLCLDLGSNDLQGDIPDG-FA 285
+P LP A + +DLS N + L L + I + F
Sbjct: 25 VPELP--------AHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFR 76
Query: 286 SLNSLQELDLSGNSFLGGQLSRN-LGKLCNLRTMILSRNNISSEV--SDFLDGLSECTNS 342
L+SL L L N FL QL L NL + L++ N+ V +F L+
Sbjct: 77 GLSSLIILKLDYNQFL--QLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTS---- 130
Query: 343 ILLEKLELRFNQFTGILPISL-GSLKNLRHLVLWQNSFLGSIPPSI---GNLTLLKELYL 398
LE L LR N I P S +++ L L N + SI L L
Sbjct: 131 --LEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNK-VKSICEEDLLNFQGKHFTLLRL 187
Query: 399 ASNQM----NGQKISDSYQHLKNQTELRTLVLNKARISDTISDWFWQLSLTLDELDVAYN 454
+S + + + T + TL L+ ++++ F+ + ++
Sbjct: 188 SSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDA-IAGTKIQSLIL 246
Query: 455 ELRGRVPNSLGFNFPAKVDLSFNNFEGRLLLWSFNVTKLYLRDNSFSGLIPNDIGQNLPF 514
+ +S G D F+G L + V L + + + +
Sbjct: 247 SNSYNMGSSFGHT--NFKDPDNFTFKG---LEASGVKTCDLSKSKIFA-LLKSVFSHFTD 300
Query: 515 LTDLG---------------NLKQLITLVISNNNLSGEIPLLFSNISFLYILDMSNNSLS 559
L L L L+ L +S N L +F N+ L +LD+S N +
Sbjct: 301 LEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIR 360
Query: 560 GSTPESIGSLRTVKFLVLRNNYLS 583
+S L +K L L N L
Sbjct: 361 ALGDQSFLGLPNLKELALDTNQLK 384
|
| >3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455 | Back alignment and structure |
|---|
Score = 95.6 bits (238), Expect = 4e-21
Identities = 71/322 (22%), Positives = 110/322 (34%), Gaps = 39/322 (12%)
Query: 108 SLLQLKDLEYLDLSMNNFTGFQVPEFIGSLKELRYLNLSGSFFSGTIPQTLGNLSNLLYL 167
S +L+DL++L + L L L L + F L+NL L
Sbjct: 49 SFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQLETGAFNGLANLEVL 108
Query: 168 DLNNFLDQSNQIDLEWLSGLSSLVYFNLGG---ADLSKAGAYWLEVFNKLHSFVELHLPN 224
L + + L+SL L + A F + F L L
Sbjct: 109 TLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASF-----FLNMRRFHVLDLTF 163
Query: 225 CNLPSLP-LSFPSLNFASLQVLDLSNNDFNSTTPHWL--------FNITSLLCLDLGSND 275
+ S+ + +L LS+ +WL F TS+ LDL N
Sbjct: 164 NKVKSICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNG 223
Query: 276 LQGDIPDGFASL---NSLQELDLSGNSFLGGQLSRNLGKLC-----------NLRTMILS 321
+ + F +Q L LS + +G K ++T LS
Sbjct: 224 FKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLS 283
Query: 322 RNNISSEVSDFLDGLSECTNSILLEKLELRFNQFTGILPISLGSLKNLRHLVLWQNSFLG 381
++ I + + ++ LE+L L N+ I + L +L L L QN FLG
Sbjct: 284 KSKIFALLKSVFSHFTD------LEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQN-FLG 336
Query: 382 SIPPSI-GNLTLLKELYLASNQ 402
SI + NL L+ L L+ N
Sbjct: 337 SIDSRMFENLDKLEVLDLSYNH 358
|
| >3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455 | Back alignment and structure |
|---|
Score = 92.9 bits (231), Expect = 3e-20
Identities = 73/312 (23%), Positives = 112/312 (35%), Gaps = 31/312 (9%)
Query: 114 DLEYLDLSMNNFTGFQVPEFIGSLKELRYLNLSGSFFSGTIPQ-TLGNLSNLLYLDLNNF 172
+ Y+DLS+N+ F L++L++L + I T LS+L+ L L+
Sbjct: 31 HVNYVDLSLNSIAELNETSFSR-LQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDY- 88
Query: 173 LDQSNQI---DLEWLSGLSSLVYFNLGGADLSKAGAYWLEVFNKLHSFVELHLPNCNLPS 229
NQ + +GL++L L +L F L S L L + N+
Sbjct: 89 ----NQFLQLETGAFNGLANLEVLTLTQCNL-DGAVLSGNFFKPLTSLEMLVLRDNNIKK 143
Query: 230 LPLSFPSLNFASLQVLDLSNNDFNSTTPHWLFNITS--LLCLDLGSNDLQ--------GD 279
+ + LN VLDL+ N S L N L L S LQ +
Sbjct: 144 IQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWE 203
Query: 280 IPDGFASLNSLQELDLSGNSFLGGQLSRNLGKLCNLRTMILSRNNISSEVSDF----LDG 335
S+ LDLSGN F R + + L +N + S F
Sbjct: 204 KCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKD 263
Query: 336 LSECTNSIL----LEKLELRFNQFTGILPISLGSLKNLRHLVLWQNSFLGSIPPSI-GNL 390
T L ++ +L ++ +L +L L L QN + I + L
Sbjct: 264 PDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNE-INKIDDNAFWGL 322
Query: 391 TLLKELYLASNQ 402
T L +L L+ N
Sbjct: 323 THLLKLNLSQNF 334
|
| >3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455 | Back alignment and structure |
|---|
Score = 91.7 bits (228), Expect = 7e-20
Identities = 61/288 (21%), Positives = 96/288 (33%), Gaps = 28/288 (9%)
Query: 112 LKDLEYLDLSMNNFTGFQVPEFIGSLKELRYLNLSGSFFSGTIPQTLGNLSNLLYLDLNN 171
L LE L L NN Q F +++ L+L+ + + L N + L
Sbjct: 128 LTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRL 187
Query: 172 FLDQSNQIDLEWLSGLSSLVYFNL------------------GGADLSKAGAYWLEVFNK 213
++ WL F + AG +
Sbjct: 188 SSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILS 247
Query: 214 LHSFVELHLPNCNLPSLP-LSFPSLNFASLQVLDLSNNDFNSTTPHWLFNITSLLCLDLG 272
+ + N +F L + ++ DLS + + + T L L L
Sbjct: 248 NSYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLA 307
Query: 273 SNDLQGDIPDG-FASLNSLQELDLSGNSFLGGQLSRNLGKLCNLRTMILSRNNISSEVSD 331
N++ I D F L L +L+LS N FLG SR L L + LS N+I +
Sbjct: 308 QNEIN-KIDDNAFWGLTHLLKLNLSQN-FLGSIDSRMFENLDKLEVLDLSYNHIRALGDQ 365
Query: 332 FLDGLSECTNSILLEKLELRFNQFTGILPISLGSLKNLRHLVLWQNSF 379
GL L++L L NQ + L +L+ + L N +
Sbjct: 366 SFLGLPN------LKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPW 407
|
| >3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455 | Back alignment and structure |
|---|
Score = 65.2 bits (159), Expect = 3e-11
Identities = 42/257 (16%), Positives = 79/257 (30%), Gaps = 29/257 (11%)
Query: 345 LEKLELRFNQFTGILPISLGSLKNLRHLVLWQNSFLGSIPPSI-GNLTLLKELYLASNQM 403
+ ++L N + S L++L+ L + Q + I + L+ L L L NQ
Sbjct: 32 VNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQF 91
Query: 404 NGQKISDSYQHLKNQTELRTLVLNKARISDTI--SDWFWQLSLTLDELDVAYNELRGRVP 461
++ L L L + + + ++F L+ +L+ L + N ++ P
Sbjct: 92 --LQLETG--AFNGLANLEVLTLTQCNLDGAVLSGNFFKPLT-SLEMLVLRDNNIKKIQP 146
Query: 462 NSLGFNFPAKVDLSFNNFEGRLLLWSFNVTKLYLRDNSFSGLIPNDIGQNLPFLTDLG-N 520
S F N L L N I + N
Sbjct: 147 ASF-----------FLNMR--------RFHVLDLTFNKVK-SICEEDLLNFQGKHFTLLR 186
Query: 521 LKQLITLVISNNNLSGEIPLLFSNISFLYILDMSNNSLSGSTPESIGSLRTVKFLVLRNN 580
L + ++ L E + + LD+S N S + +
Sbjct: 187 LSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLIL 246
Query: 581 YLSGKLPLSLKNCTFQE 597
S + S + F++
Sbjct: 247 SNSYNMGSSFGHTNFKD 263
|
| >3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455 | Back alignment and structure |
|---|
Score = 48.2 bits (115), Expect = 6e-06
Identities = 33/155 (21%), Positives = 56/155 (36%), Gaps = 13/155 (8%)
Query: 110 LQLKDLEYLDLSMNNFTGFQVPEFIGSLKELRYLNLSGSFFSGTIPQTLGNLSNLLYLDL 169
L+ ++ DLS + F +L L L+ + + L++LL L+L
Sbjct: 272 LEASGVKTCDLSKSKIFALLKSVFSH-FTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNL 330
Query: 170 NNFLDQSNQI---DLEWLSGLSSLVYFNLGGADLSKAGAYWLEVFNKLHSFVELHLPNCN 226
+ N + D L L +L + G + F L + EL L
Sbjct: 331 SQ-----NFLGSIDSRMFENLDKLEVLDLSYNHIRALGD---QSFLGLPNLKELALDTNQ 382
Query: 227 LPSLPLSFPSLNFASLQVLDLSNNDFNSTTPHWLF 261
L S+P SLQ + L N ++ + P +
Sbjct: 383 LKSVPDGIFD-RLTSLQKIWLHTNPWDCSCPRIDY 416
|
| >3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390 | Back alignment and structure |
|---|
Score = 103 bits (259), Expect = 5e-24
Identities = 61/354 (17%), Positives = 115/354 (32%), Gaps = 41/354 (11%)
Query: 106 SPSLLQLKDLEYLDLSMNNFTGFQVPEFIGSLKELRYLNLSGSFFSGTIPQTLGNLSNLL 165
+ L + + + + + S +++ LNL+ +
Sbjct: 38 GFEDITLNNQKIVTFKNSTMRKLP-AALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQ 96
Query: 166 YLDL-NNFLDQSNQIDLEWLSGLSSLVYFNLGGADLSKAGAYWLEVFNKLHSFVELHLPN 224
L + N + + + L L DLS +F+ L + N
Sbjct: 97 KLYMGFNAIR---YLPPHVFQNVPLLTVLVLERNDLSSLPR---GIFHNTPKLTTLSMSN 150
Query: 225 CNLPSLP-LSFPSLNFASLQVLDLSNNDFNSTTPHWLFNITSLLCLDLGSNDLQGDIPDG 283
NL + +F + SLQ L LS+N + SL ++ N L
Sbjct: 151 NNLERIEDDTFQATT--SLQNLQLSSNRLTHVDLSLI---PSLFHANVSYNLLS-----T 200
Query: 284 FASLNSLQELDLSGNSFLGGQLSRNLGKLCNLRTMILSRNNISSEVSDFLDGLSECTNSI 343
A +++ELD S NS + + L + L NN++ L
Sbjct: 201 LAIPIAVEELDASHNSI--NVVRGPV--NVELTILKLQHNNLTD-----TAWLLNYPG-- 249
Query: 344 LLEKLELRFNQFTGILPISLGSLKNLRHLVLWQNSFLGSIPPSIGNLTLLKELYLASNQM 403
L +++L +N+ I+ ++ L L + N L ++ + LK L L+ N +
Sbjct: 250 -LVEVDLSYNELEKIMYHPFVKMQRLERLYISNNR-LVALNLYGQPIPTLKVLDLSHNHL 307
Query: 404 NGQKISDSYQHLKNQTELRTLVLNKARISDTISDWFWQLSLTLDELDVAYNELR 457
+ + L L L+ I L L +++N+
Sbjct: 308 --LHVERNQPQFDR---LENLYLDHNSIVTLKLSTHHTLK----NLTLSHNDWD 352
|
| >3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390 | Back alignment and structure |
|---|
Score = 93.6 bits (233), Expect = 1e-20
Identities = 75/402 (18%), Positives = 140/402 (34%), Gaps = 63/402 (15%)
Query: 183 WLSGLSSLVYFNLGGADLSKAGAYWLEVFNKLHSFVELHLPNCNLPSLPLSFPSLNFASL 242
S L F D+ Y+ L++ + N + LP + +F +
Sbjct: 13 IDSNLQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMRKLPAALLD-SFRQV 71
Query: 243 QVLDLSNNDFNSTTPHWLFNITSLLCLDLGSNDLQGDIPDGFASLNSLQELDLSGNSFLG 302
++L+L++ + ++ L +G N ++ P F ++ L L L N
Sbjct: 72 ELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDL-- 129
Query: 303 GQLSRNL-GKLCNLRTMILSRNNISSEVSDFLDGLSECTNSILLEKLELRFNQFTGILPI 361
L R + L T+ +S NN+ D + L+ L+L N+ T +
Sbjct: 130 SSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTS------LQNLQLSSNRLTH---V 180
Query: 362 SLGSLKNLRHLVLWQNSFLGSIPPSIGNLTLLKELYLASNQMNGQKISDSYQHLKNQTEL 421
L + +L H + N ++ ++EL + N +N + EL
Sbjct: 181 DLSLIPSLFHANVSYNLL-----STLAIPIAVEELDASHNSIN--VVRGP-----VNVEL 228
Query: 422 RTLVLNKARISDTISDWFWQLSLTLDELDVAYNELRGRVPNSLGFNFPAKVDLSFNNFEG 481
L L ++DT W L E+D++YNEL + ++ F
Sbjct: 229 TILKLQHNNLTDT--AWLLNYP-GLVEVDLSYNELE---------------KIMYHPFVK 270
Query: 482 RLLLWSFNVTKLYLRDNSFSGLIPNDIGQNLPFLTDLGNLKQLITLVISNNNLSGEIPLL 541
+ +LY+ +N L + L L +S+N+L +
Sbjct: 271 -----MQRLERLYISNNRLV---------ALN--LYGQPIPTLKVLDLSHNHLL-HVERN 313
Query: 542 FSNISFLYILDMSNNSLSGSTPESIGSLRTVKFLVLRNNYLS 583
L L + +NS+ + + T+K L L +N
Sbjct: 314 QPQFDRLENLYLDHNSI---VTLKLSTHHTLKNLTLSHNDWD 352
|
| >2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306 | Back alignment and structure |
|---|
Score = 100 bits (252), Expect = 1e-23
Identities = 52/288 (18%), Positives = 94/288 (32%), Gaps = 43/288 (14%)
Query: 118 LDLSMNNFTGFQVPEFIGSLKELRYLNLSGSFFSGTIPQTLGNLSNLLYLDLNNFLDQSN 177
+ + T VP I L L + L+ L L L++ N
Sbjct: 12 IRCNSKGLT--SVPTGI--PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSS-----N 62
Query: 178 QIDLEWLSGLSSLVYFNLGGADLSKAGAYWLEVFNKLHSFVELHLPNCNLPSLPLSFPSL 237
+ + + S L L + ++ +F L
Sbjct: 63 GLSFKGCCS----------------------QSDFGTTSLKYLDLSFNGVITMSSNFLGL 100
Query: 238 NFASLQVLDLSNNDFNSTTPHWLF-NITSLLCLDLGSNDLQGDIPDGFASLNSLQELDLS 296
L+ LD +++ + +F ++ +L+ LD+ + F L+SL+ L ++
Sbjct: 101 E--QLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMA 158
Query: 297 GNSFLGGQLSRNLGKLCNLRTMILSRNNISSEVSDFLDGLSECTNSILLEKLELRFNQFT 356
GNSF L +L NL + LS+ + + LS L+ L + N F
Sbjct: 159 GNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSS------LQVLNMSHNNFF 212
Query: 357 GILPISLGSLKNLRHLVLWQNSFLGSIPPSI--GNLTLLKELYLASNQ 402
+ L +L+ L N + + + L L L N
Sbjct: 213 SLDTFPYKCLNSLQVLDYSLNH-IMTSKKQELQHFPSSLAFLNLTQND 259
|
| >2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306 | Back alignment and structure |
|---|
Score = 83.1 bits (206), Expect = 1e-17
Identities = 48/224 (21%), Positives = 83/224 (37%), Gaps = 14/224 (6%)
Query: 108 SLLQLKDLEYLDLSMNNFTGFQVPEFIGS-LKELRYLNLSGSFFSGTIPQTLGNLSNLLY 166
+L L L LS N + L+YL+LS + T+ L L +
Sbjct: 47 VFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGVI-TMSSNFLGLEQLEH 105
Query: 167 LDLNNFLDQSNQI----DLEWLSGLSSLVYFNLGGADLSKAGAYWLEVFNKLHSFVELHL 222
LD + + + + L +L+Y ++ A +FN L S L +
Sbjct: 106 LDFQH-----SNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFN---GIFNGLSSLEVLKM 157
Query: 223 PNCNLPSLPLSFPSLNFASLQVLDLSNNDFNSTTPHWLFNITSLLCLDLGSNDLQGDIPD 282
+ L +L LDLS +P +++SL L++ N+
Sbjct: 158 AGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTF 217
Query: 283 GFASLNSLQELDLSGNSFLGGQLSRNLGKLCNLRTMILSRNNIS 326
+ LNSLQ LD S N + + +L + L++N+ +
Sbjct: 218 PYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFA 261
|
| >2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306 | Back alignment and structure |
|---|
Score = 70.8 bits (174), Expect = 1e-13
Identities = 57/255 (22%), Positives = 86/255 (33%), Gaps = 45/255 (17%)
Query: 345 LEKLELRFNQFTGILPISLGSLKNLRHLVLWQN--SFLGSIPPSIGNLTLLKELYLASNQ 402
+LEL N+ + L L L L N SF G S T LK L L+ N
Sbjct: 30 ATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNG 89
Query: 403 MNGQKISDSYQHLKNQTELRTLVLNKARISDTIS-DWFWQLSLTLDELDVAYNELRGRVP 461
+ +S ++ L+ L L + + F L L LD+++ R
Sbjct: 90 V--ITMSSNFLGLEQ---LEHLDFQHSNLKQMSEFSVFLSLR-NLIYLDISHTHTR---- 139
Query: 462 NSLGFNFPAKVDLSFNNFEGRLLLWSFNVTKLYLRDNSFSGLIPNDIGQNLPFLTDL--- 518
F G ++ L + NSF DI L LT L
Sbjct: 140 -----------VAFNGIFNG-----LSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLS 183
Query: 519 ------------GNLKQLITLVISNNNLSGEIPLLFSNISFLYILDMSNNSLSGSTPESI 566
+L L L +S+NN + ++ L +LD S N + S + +
Sbjct: 184 QCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQEL 243
Query: 567 GSLRT-VKFLVLRNN 580
+ + FL L N
Sbjct: 244 QHFPSSLAFLNLTQN 258
|
| >2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306 | Back alignment and structure |
|---|
Score = 66.2 bits (162), Expect = 5e-12
Identities = 50/199 (25%), Positives = 76/199 (38%), Gaps = 32/199 (16%)
Query: 104 EISPSLLQLKDLEYLDLSMNNFTGFQVPEFIGSLKELRYLNLSGSFFSGTIPQTLGNLSN 163
+S + L L+ LE+LD +N SL+ L YL++S + LS+
Sbjct: 92 TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSS 151
Query: 164 LLYLDLNNFLDQSNQIDLEWLSGLSSLVYFNLGGADLSKAGAYWLEVFNKLHSFVELHLP 223
L L + N +L + F +L + L L
Sbjct: 152 LEVLKM-----AGNSFQENFLPDI-----------------------FTELRNLTFLDLS 183
Query: 224 NCNLPSLP-LSFPSLNFASLQVLDLSNNDFNSTTPHWLFNITSLLCLDLGSNDLQGDIPD 282
C L L +F SL+ SLQVL++S+N+F S + SL LD N +
Sbjct: 184 QCQLEQLSPTAFNSLS--SLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQ 241
Query: 283 GFASL-NSLQELDLSGNSF 300
+SL L+L+ N F
Sbjct: 242 ELQHFPSSLAFLNLTQNDF 260
|
| >2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306 | Back alignment and structure |
|---|
Score = 47.3 bits (113), Expect = 7e-06
Identities = 29/151 (19%), Positives = 53/151 (35%), Gaps = 30/151 (19%)
Query: 104 EISPSLLQ-LKDLEYLDLSMNNFTGFQVPEFIGSLKELRYLNLSGSFFSGTIPQTLGNLS 162
+ L LE L ++ N+F +P+ L+ L +L+LS P +LS
Sbjct: 140 VAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLS 199
Query: 163 NLLYLDLNNFLDQSNQIDLEWLSGLSSLVYFNLGGADLSKAGAYWLEVFNKLHSFVELHL 222
+L L++++ N L + + L+S L
Sbjct: 200 SLQVLNMSH-----NNF-----FSLDT-------------------FPYKCLNSLQVLDY 230
Query: 223 PNCNLPSLPLSFPSLNFASLQVLDLSNNDFN 253
++ + +SL L+L+ NDF
Sbjct: 231 SLNHIMTSKKQELQHFPSSLAFLNLTQNDFA 261
|
| >1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454 | Back alignment and structure |
|---|
Score = 101 bits (254), Expect = 4e-23
Identities = 85/490 (17%), Positives = 157/490 (32%), Gaps = 93/490 (18%)
Query: 105 ISPSLLQLKDLEYLDLSMNNFTGFQVPEFIGSLKELRYLNLSGSFFSGTIPQTLGNLSNL 164
I+P + L+ +N T ++P ++K + S + P G +
Sbjct: 3 INPRNVSNTFLQEPLRHSSNLT--EMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREM 60
Query: 165 LYLDLNNFLDQSNQIDLEWLSGLSSLVYFNLGGADLSKAGAYWLEVFNKLHSFVELHLPN 224
L + LD+ L LS + L
Sbjct: 61 AVSRLRDCLDRQ-------------AHELELNNLGLS-------SLPELPPHLESLVASC 100
Query: 225 CNLPSLPLSFPSLNFASLQVLDLSNNDFNSTTPHWLFNITSLLCLDLGSNDLQGDIPDGF 284
+L LP SL SL V + + + L L + +N L+ +P+
Sbjct: 101 NSLTELPELPQSLK--SLLVDNNNLKALSD-------LPPLLEYLGVSNNQLE-KLPE-L 149
Query: 285 ASLNSLQELDLSGNSFLGGQLSRNLGKLCNLRTMILSRNNISSEVSDFLDGLSECTNSIL 344
+ + L+ +D+ N L + +L + N + L L
Sbjct: 150 QNSSFLKIIDVDNN-----SLKKLPDLPPSLEFIAAGNNQLEE-----LPELQNLPF--- 196
Query: 345 LEKLELRFNQFTGILPISLGSLKNLRHLVLWQNSFLGSIPPSIGNLTLLKELYLASNQMN 404
L + N + +L +V N P + NL L +Y +N +
Sbjct: 197 LTAIYADNNSLKKLPD----LPLSLESIVAGNNIL--EELPELQNLPFLTTIYADNNLL- 249
Query: 405 GQKISDSYQHLKNQTELRTLVLNKARISDTISDWFWQLSLTLDELDVAYNELRGRVPNSL 464
+ + D L+ L + ++ + + L+ LD + ++ L +P +L
Sbjct: 250 -KTLPDLPPSLEA------LNVRDNYLT-DLPELPQSLT-FLDVSENIFSGLS-ELPPNL 299
Query: 465 GFNFPAKVDLSFNNFEGRLLLWSFNVTKLYLRDNSFSGLIPNDIGQNLPFLTDLGNLKQL 524
++ S N L ++ +L + +N L P +L
Sbjct: 300 Y-----YLNASSNEIRSLCDLPP-SLEELNVSNNKLIEL-PALPP-------------RL 339
Query: 525 ITLVISNNNLSGEIPLLFSNISFLYILDMSNNSLSGSTPESIGSLRTVKFLVLRNNYLSG 584
L+ S N+L+ E+P L N L L + N L P+ S+ LR N
Sbjct: 340 ERLIASFNHLA-EVPELPQN---LKQLHVEYNPLR-EFPDIPESVED-----LRMNSHLA 389
Query: 585 KLPLSLKNCT 594
++P +N
Sbjct: 390 EVPELPQNLK 399
|
| >1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454 | Back alignment and structure |
|---|
Score = 92.0 bits (229), Expect = 6e-20
Identities = 79/449 (17%), Positives = 146/449 (32%), Gaps = 86/449 (19%)
Query: 112 LKDLEYLDLSMNNFTGFQVPEFIGSLKELRYLNLSGSFFSGTIPQTLGNLSNLLYLDLNN 171
LE L S N+ T ++PE SLK L N + S P L YL ++N
Sbjct: 90 PPHLESLVASCNSLT--ELPELPQSLKSLLVDNNNLKALSDLPP-------LLEYLGVSN 140
Query: 172 FLDQSNQI-DLEWLSGLSSLVYFNLGGADLSKAGAYWLEVFNKLHSFVELHLPNCNLPSL 230
NQ+ L L S L ++ L ++ + S + N L L
Sbjct: 141 -----NQLEKLPELQNSSFLKIIDVDNNSLK-------KLPDLPPSLEFIAAGNNQLEEL 188
Query: 231 PLSFPSLNFASLQVLDLSNNDFNSTTPHWLFNITSLLCLDLGSNDLQGDIPDGFASLNSL 290
P +L L + NN SL + G+N L+ +L L
Sbjct: 189 P-ELQNLP--FLTAIYADNNSLKKLPDL----PLSLESIVAGNNILE--ELPELQNLPFL 239
Query: 291 QELDLSGNSFLGGQLSRNLGKLCNLRTMILSRNNISSEVSDFLDGLSECTNSILLEKLEL 350
+ N L +L + + N ++ + + L+ L+ E
Sbjct: 240 TTIYADNN-----LLKTLPDLPPSLEALNVRDNYLTD-LPELPQSLTF------LDVSEN 287
Query: 351 RFNQFTGILPISLGSLKNLRHLVLWQNSFLGSIPPSIGNLTLLKELYLASNQMNGQKISD 410
F+ + + P NL +L N + S+ +L EL +++N++ ++
Sbjct: 288 IFSGLSELPP-------NLYYLNASSNE-IRSLCDLPPSLE---ELNVSNNKL--IELPA 334
Query: 411 SYQHLKNQTELRTLVLNKARISDTISDWFWQLSLTLDELDVAYNELRGRVPNSLGFNFPA 470
L+ L+ + ++ + + L +L V YN LR P+ +
Sbjct: 335 LPPRLER------LIASFNHLA-EVPELPQNLK----QLHVEYNPLR-EFPDIPE----S 378
Query: 471 KVDLSFNNFEGRLLLWSFNVTKLYLRDNSFSGLIPNDIGQNLPFLTDLGNLKQLITLVIS 530
DL N+ + N+ +L++ N P+ + L ++
Sbjct: 379 VEDLRMNSHLAEVPELPQNLKQLHVETNPLREF-PDIPES-------------VEDLRMN 424
Query: 531 NNNLSGEIPLLFSNISFLYILDMSNNSLS 559
+ + L ++
Sbjct: 425 SERVVDPYEFAHETTDKLEDDVFEHHHHH 453
|
| >1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330 | Back alignment and structure |
|---|
Score = 99.7 bits (249), Expect = 4e-23
Identities = 62/289 (21%), Positives = 100/289 (34%), Gaps = 35/289 (12%)
Query: 113 KDLEYLDLSMNNFTGFQVPEFIGSLKELRYLNLSGSFFSGTIPQTLGNLSNLLYLDL-NN 171
D LDL N T + +F LK L L L + S P L L L L N
Sbjct: 52 PDTALLDLQNNKITEIKDGDFKN-LKNLHTLILINNKISKISPGAFAPLVKLERLYLSKN 110
Query: 172 FLD---------------QSNQI---DLEWLSGLSSLVYFNLGGADLSKAGAYWLE--VF 211
L N+I +GL+ ++ LG L + +E F
Sbjct: 111 QLKELPEKMPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSS---GIENGAF 167
Query: 212 NKLHSFVELHLPNCNLPSLPLSFPSLNFASLQVLDLSNNDFNSTTPHWLFNITSLLCLDL 271
+ + + + N+ ++P SL L L N L + +L L L
Sbjct: 168 QGMKKLSYIRIADTNITTIPQGL----PPSLTELHLDGNKITKVDAASLKGLNNLAKLGL 223
Query: 272 GSNDLQGDIPDG-FASLNSLQELDLSGNSFLGGQLSRNLGKLCNLRTMILSRNNISSEVS 330
N + + +G A+ L+EL L+ N + ++ L ++ + L NNIS+ S
Sbjct: 224 SFNSIS-AVDNGSLANTPHLRELHLNNNKLV--KVPGGLADHKYIQVVYLHNNNISAIGS 280
Query: 331 DFLDGLSECTNSILLEKLELRFN--QFTGILPISLGSLKNLRHLVLWQN 377
+ T + L N Q+ I P + + + L
Sbjct: 281 NDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQLGNY 329
|
| >1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330 | Back alignment and structure |
|---|
Score = 97.0 bits (242), Expect = 4e-22
Identities = 69/335 (20%), Positives = 118/335 (35%), Gaps = 51/335 (15%)
Query: 226 NLPSLPLSFPSLNFASLQVLDLSNNDFNSTTPHWLFNITSLLCLDLGSNDLQGDIPDGFA 285
L +P P +LDL NN N+ +L L L +N + P FA
Sbjct: 42 GLEKVPKDLPP----DTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFA 97
Query: 286 SLNSLQELDLSGNSFLGGQLSRNLGKLCNLRTMILSRNNISSEVSDFLDGLSECTNSILL 345
L L+ L LS N +L + L+ + + N I+ +GL++ +
Sbjct: 98 PLVKLERLYLSKNQL--KELPEKM--PKTLQELRVHENEITKVRKSVFNGLNQ------M 147
Query: 346 EKLELRFNQFT--GILPISLGSLKNLRHLVLWQNSFLGSIPPSIGNLTLLKELYLASNQM 403
+EL N GI + +K L ++ + + + +IP G L EL+L N++
Sbjct: 148 IVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTN-ITTIPQ--GLPPSLTELHLDGNKI 204
Query: 404 NGQKISDSYQHLKNQTELRTLVLNKARISDTISDWFWQLSLTLDELDVAYNELRGRVPNS 463
K+ + LK L L L+ IS + L EL + N+L +VP
Sbjct: 205 --TKVDAAS--LKGLNNLAKLGLSFNSISAVDNGSLANTP-HLRELHLNNNKLV-KVPGG 258
Query: 464 LGFNFPAKVDLSFNNFEGRLLLWSFNVTKLYLRDNSFSGLIPNDIGQNLPFLTDLGNLKQ 523
L + + +YL +N+ S + ND
Sbjct: 259 L-ADHK-------------------YIQVVYLHNNNISAIGSNDFCPPGYNT----KKAS 294
Query: 524 LITLVISNNNLSGEI--PLLFSNISFLYILDMSNN 556
+ + +N + P F + + + N
Sbjct: 295 YSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQLGNY 329
|
| >1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330 | Back alignment and structure |
|---|
Score = 71.6 bits (176), Expect = 9e-14
Identities = 58/317 (18%), Positives = 102/317 (32%), Gaps = 78/317 (24%)
Query: 269 LDLGSNDLQGDIPDGFASLNSLQELDLSGNSFLGGQLSRN-LGKLCNLRTMILSRNNISS 327
+ L+ +P LDL N ++ L NL T+IL N IS
Sbjct: 36 VQCSDLGLE-KVPKDLPP--DTALLDLQNNKI--TEIKDGDFKNLKNLHTLILINNKISK 90
Query: 328 EVSDFLDGLSECTNSILLEKLELRFNQFTGILPISLGSLKNLRHLVLWQNSFLGSIPPSI 387
L + LE+L L NQ + K L+ L + +N + + S+
Sbjct: 91 ISPGAFAPLVK------LERLYLSKNQLKEL---PEKMPKTLQELRVHENE-ITKVRKSV 140
Query: 388 -GNLTLLKELYLASNQMNGQKISDSYQHLKNQTELRTLVLNKARISDTISDWFWQLSLTL 446
L + + L +N + I + + +L + + I+
Sbjct: 141 FNGLNQMIVVELGTNPLKSSGIENGA--FQGMKKLSYIRIADTNIT-------------- 184
Query: 447 DELDVAYNELRGRVPNSLGFNFPAKVDLSFNNFEGRLLLWSFNVTKLYLRDNSFSGLIPN 506
+P L P ++T+L+L N + +
Sbjct: 185 ------------TIPQGL---PP-------------------SLTELHLDGNKITKVDAA 210
Query: 507 DIGQNLPFLTDLGNLKQLITLVISNNNLSGEIPLLFSNISFLYILDMSNNSLSGSTPESI 566
L L L L +S N++S +N L L ++NN L P +
Sbjct: 211 S----------LKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-KVPGGL 259
Query: 567 GSLRTVKFLVLRNNYLS 583
+ ++ + L NN +S
Sbjct: 260 ADHKYIQVVYLHNNNIS 276
|
| >1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330 | Back alignment and structure |
|---|
Score = 51.9 bits (125), Expect = 3e-07
Identities = 62/284 (21%), Positives = 93/284 (32%), Gaps = 76/284 (26%)
Query: 313 CNLRTMILSRNNISSEVSDFLDGLSECTNSILLEKLELRFNQFTGILPISLGSLKNLRHL 372
C+LR + S + L T L+L+ N+ T I +LKNL L
Sbjct: 31 CHLRVVQCSDLGLEK----VPKDLPPDT-----ALLDLQNNKITEIKDGDFKNLKNLHTL 81
Query: 373 VLWQNSFLGSIPPSI-GNLTLLKELYLASNQMNGQKISDSYQHLKNQTELRTLVLNKARI 431
+L N + I P L L+ LYL+ NQ+ EL +
Sbjct: 82 ILINNK-ISKISPGAFAPLVKLERLYLSKNQL---------------KELPEKMPK---- 121
Query: 432 SDTISDWFWQLSLTLDELDVAYNELRGRVPNSLGFNFPAKVDLSFNNFEGRLLLWSFNVT 491
TL EL V NE+ +V S FN +
Sbjct: 122 -------------TLQELRVHENEIT-KVRKS-----------VFNGLN--------QMI 148
Query: 492 KLYLRDNSF-SGLIPNDIGQNLPFLTDLGNLKQLITLVISNNNLSGEIPLLFSNISFLYI 550
+ L N S I N +K+L + I++ N++ L + L
Sbjct: 149 VVELGTNPLKSSGIENGA---------FQGMKKLSYIRIADTNITTIPQGLPPS---LTE 196
Query: 551 LDMSNNSLSGSTPESIGSLRTVKFLVLRNNYLSGKLPLSLKNCT 594
L + N ++ S+ L + L L N +S SL N
Sbjct: 197 LHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTP 240
|
| >3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597 | Back alignment and structure |
|---|
Score = 102 bits (255), Expect = 5e-23
Identities = 67/360 (18%), Positives = 118/360 (32%), Gaps = 38/360 (10%)
Query: 106 SPSLLQLKDLEYLDLSMNNFTGFQVPEFIGSLKELRYLNLSGSFFSGTIPQTLGNLSNLL 165
+ L + + + + + S +++ LNL+ +
Sbjct: 44 GFEDITLNNQKIVTFKNSTMRKLP-AALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQ 102
Query: 166 YLDL-NNFLDQSNQIDLEWLSGLSSLVYFNLGGADLSKAGAYWLEVFNKLHSFVELHLPN 224
L + N + + + L L DLS +F+ L + N
Sbjct: 103 KLYMGFNAIR---YLPPHVFQNVPLLTVLVLERNDLSSLPR---GIFHNTPKLTTLSMSN 156
Query: 225 CNLPSLP-LSFPSLNFASLQVLDLSNNDFNSTTPHWLFNITSLLCLDLGSNDLQGDIPDG 283
NL + +F + SLQ L LS+N + SL ++ N L
Sbjct: 157 NNLERIEDDTFQATT--SLQNLQLSSNRLTHVDLSLI---PSLFHANVSYNLLS-----T 206
Query: 284 FASLNSLQELDLSGNSFLGGQLSRNLGKLCNLRTMILSRNNISSEVSDFLDGLSECTNSI 343
A +++ELD S NS + + L + L NN++ L
Sbjct: 207 LAIPIAVEELDASHNSI--NVVRGPV--NVELTILKLQHNNLTD-----TAWLLNYPG-- 255
Query: 344 LLEKLELRFNQFTGILPISLGSLKNLRHLVLWQNSFLGSIPPSIGNLTLLKELYLASNQM 403
L +++L +N+ I+ ++ L L + N L ++ + LK L L+ N +
Sbjct: 256 -LVEVDLSYNELEKIMYHPFVKMQRLERLYISNNR-LVALNLYGQPIPTLKVLDLSHNHL 313
Query: 404 NGQKISDSYQHLKNQTELRTLVLNKARISDTISDWFWQL-SLTLDELDVAYNELRGRVPN 462
+ + L L L+ I L +LTL D N LR N
Sbjct: 314 --LHVERNQPQFDR---LENLYLDHNSIVTLKLSTHHTLKNLTLSHNDWDCNSLRALFRN 368
|
| >3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597 | Back alignment and structure |
|---|
Score = 98.8 bits (246), Expect = 7e-22
Identities = 80/480 (16%), Positives = 154/480 (32%), Gaps = 44/480 (9%)
Query: 107 PSLLQLKDLEYLDLSMNNFTGFQVPEFIGSLKELRYLNLSGSFFSGTIPQTLGNLSNLLY 166
D+ + + + GF+ +L + + S L + +
Sbjct: 24 QYDCVFYDVHIDMQTQDVYFGFE----DITLNNQKIVTFKNSTMRKLPAALLDSFRQVEL 79
Query: 167 LDL-NNFLDQSNQIDLEWLSGLSSLVYFNLGGADLSKAGAYWLEVFNKLHSFVELHLPNC 225
L+L + + +ID + ++ +G + VF + L L
Sbjct: 80 LNLNDLQI---EEIDTYAFAYAHTIQKLYMGFNAIRYLPP---HVFQNVPLLTVLVLERN 133
Query: 226 NLPSLPLSFPSLNFASLQVLDLSNNDFNSTTPHWLFNITSLLCLDLGSNDLQGDIPDGFA 285
+L SLP N L L +SNN+ TSL L L SN L +
Sbjct: 134 DLSSLPRGIFH-NTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLT-HVDLS-- 189
Query: 286 SLNSLQELDLSGNSFLGGQLSRNLGKLCNLRTMILSRNNISSEVSDFLDGLSECTNSILL 345
+ SL ++S N L + + S N+I+ L+
Sbjct: 190 LIPSLFHANVSYNLL------STLAIPIAVEELDASHNSINVVRGPVNVELTI------- 236
Query: 346 EKLELRFNQFTGILPISLGSLKNLRHLVLWQNSFLGSIPPSI-GNLTLLKELYLASNQMN 404
L+L+ N T L + L + L N L I + L+ LY+++N+
Sbjct: 237 --LKLQHNNLTDTA--WLLNYPGLVEVDLSYNE-LEKIMYHPFVKMQRLERLYISNNR-- 289
Query: 405 GQKISDSYQHLKNQTELRTLVLNKARISDTISDWFWQLSLTLDELDVAYNELRGRVPNSL 464
+ + + L+ L L+ + + Q L+ L + +N + + S
Sbjct: 290 ---LVALNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFD-RLENLYLDHNSIV-TLKLST 343
Query: 465 GFNFPAKVDLSFNNFEG-RLLLWSFNVTKLYLRDNSFSGLIPNDIGQNLPFLTDLGNLKQ 523
+ + LS N+++ L NV + + D I + L
Sbjct: 344 -HHTLKNLTLSHNDWDCNSLRALFRNVARPAVDDADQHCKIDYQLEHGLCCKESDKPYLD 402
Query: 524 LITLVISNNNLSGEIPLLFSNISFLYILDMSNNSLSGSTPESIGSLRTVKFLVLRNNYLS 583
+ I+ ++ ++ S ++ + T + L+ + L N L
Sbjct: 403 RLLQYIALTSVVEKVQRAQGRCSATDTINSVQSLSHYITQQGGVPLQGNEQLEAEVNELR 462
|
| >3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597 | Back alignment and structure |
|---|
Score = 93.5 bits (232), Expect = 4e-20
Identities = 74/403 (18%), Positives = 139/403 (34%), Gaps = 63/403 (15%)
Query: 182 EWLSGLSSLVYFNLGGADLSKAGAYWLEVFNKLHSFVELHLPNCNLPSLPLSFPSLNFAS 241
S L F D+ Y+ L++ + N + LP + +F
Sbjct: 18 CIDSNLQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMRKLPAALLD-SFRQ 76
Query: 242 LQVLDLSNNDFNSTTPHWLFNITSLLCLDLGSNDLQGDIPDGFASLNSLQELDLSGNSFL 301
+++L+L++ + ++ L +G N ++ P F ++ L L L N
Sbjct: 77 VELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDL- 135
Query: 302 GGQLSRNL-GKLCNLRTMILSRNNISSEVSDFLDGLSECTNSILLEKLELRFNQFTGILP 360
L R + L T+ +S NN+ D + L+ L+L N+ T
Sbjct: 136 -SSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTS------LQNLQLSSNRLTH--- 185
Query: 361 ISLGSLKNLRHLVLWQNSFLGSIPPSIGNLTLLKELYLASNQMNGQKISDSYQHLKNQTE 420
+ L + +L H + N ++ ++EL + N + + E
Sbjct: 186 VDLSLIPSLFHANVSYNLL-----STLAIPIAVEELDASHNSI-------NVVRGPVNVE 233
Query: 421 LRTLVLNKARISDTISDWFWQLSLTLDELDVAYNELRGRVPNSLGFNFPAKVDLSFNNFE 480
L L L ++DT W L E+D++YNEL + ++ F
Sbjct: 234 LTILKLQHNNLTDT--AWLLNYP-GLVEVDLSYNELE---------------KIMYHPFV 275
Query: 481 GRLLLWSFNVTKLYLRDNSFSGLIPNDIGQNLPFLTDLGNLKQLITLVISNNNLSGEIPL 540
+ +LY+ +N L + L L +S+N+L +
Sbjct: 276 K-----MQRLERLYISNNRLV---------ALN--LYGQPIPTLKVLDLSHNHLL-HVER 318
Query: 541 LFSNISFLYILDMSNNSLSGSTPESIGSLRTVKFLVLRNNYLS 583
L L + +NS+ + + T+K L L +N
Sbjct: 319 NQPQFDRLENLYLDHNSI---VTLKLSTHHTLKNLTLSHNDWD 358
|
| >3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597 | Back alignment and structure |
|---|
Score = 56.9 bits (137), Expect = 1e-08
Identities = 43/276 (15%), Positives = 93/276 (33%), Gaps = 28/276 (10%)
Query: 322 RNNISSEVSDFLDGLSECTNSILLEKLELRFNQFTGILPISLGSLKNLRHLVLWQNSFLG 381
R N+ ++ S + + + +L N + + ++ +
Sbjct: 6 RYNVKPRQPEYKCIDSNLQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNST-MR 64
Query: 382 SIPPSI-GNLTLLKELYLASNQMNGQKISDSYQHLKNQTELRTLVLNKARISDTISDWFW 440
+P ++ + ++ L L Q+ +I ++ L + I F
Sbjct: 65 KLPAALLDSFRQVELLNLNDLQIE--EIDTY--AFAYAHTIQKLYMGFNAIRYLPPHVFQ 120
Query: 441 QLSLTLDELDVAYNELRGRVPNSLGFNFPA--KVDLSFNN---FEGRLLLWSFNVTKLYL 495
+ L L + N+L +P + N P + +S NN E + ++ L L
Sbjct: 121 NVP-LLTVLVLERNDLS-SLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQL 178
Query: 496 RDNS--------FSGLIPNDIGQNLPFLTDLGNLKQLITLVISNNNLSGEIPLLFSNISF 547
N L ++ NL L+ L + L S+N+++ +
Sbjct: 179 SSNRLTHVDLSLIPSLFHANVSYNL--LSTLAIPIAVEELDASHNSINVVRGPVNVE--- 233
Query: 548 LYILDMSNNSLSGSTPESIGSLRTVKFLVLRNNYLS 583
L IL + +N+L + + + + + L N L
Sbjct: 234 LTILKLQHNNL--TDTAWLLNYPGLVEVDLSYNELE 267
|
| >2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353 | Back alignment and structure |
|---|
Score = 96.7 bits (241), Expect = 6e-22
Identities = 55/278 (19%), Positives = 99/278 (35%), Gaps = 29/278 (10%)
Query: 114 DLEYLDLSMNNFTGFQVPEFIGSLKELRYLNLSGSFFSGTIPQTLGNLSNLLYLDLNNFL 173
++ LDLS N T + L+ L L+ + + + +L +L +LDL+
Sbjct: 53 AVKSLDLSNNRITYISNSDLQR-CVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSY-- 109
Query: 174 DQSNQ---IDLEWLSGLSSLVYFNLGGADLSKAGAYWLEVFNKLHSFVELHLPNCN-LPS 229
N + W LSSL + NL G G +F+ L L + N +
Sbjct: 110 ---NYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGET--SLFSHLTKLQILRVGNMDTFTK 164
Query: 230 LPL-SFPSLNFASLQVLDLSNNDFNSTTPHWLFNITSLLCLDLGSNDLQGDIPDGFASLN 288
+ F L L+ L++ +D S P L +I ++ L L + +
Sbjct: 165 IQRKDFAGL--TFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTS 222
Query: 289 SLQELDLSGNSFLGGQLSR-------NLGKLCNLRTMILSRNNISSEVSDFLDGLSECTN 341
S++ L+L S +L K R + ++ ++ +
Sbjct: 223 SVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQVMKLLNQISG---- 278
Query: 342 SILLEKLELRFNQFTGILPISLGSLKNLRHLVLWQNSF 379
L +LE NQ + L +L+ + L N +
Sbjct: 279 ---LLELEFSRNQLKSVPDGIFDRLTSLQKIWLHTNPW 313
|
| >2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353 | Back alignment and structure |
|---|
Score = 89.4 bits (222), Expect = 2e-19
Identities = 72/338 (21%), Positives = 121/338 (35%), Gaps = 64/338 (18%)
Query: 225 CNLPSLPL-SFPSLNFASLQVLDLSNNDFNSTTPHWLFNITSLLCLDLGSNDLQGDIPDG 283
C S L S PS +++ LDLSNN + L +L L L SN + I +
Sbjct: 36 CKGSSGSLNSIPSGLTEAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGIN-TIEED 94
Query: 284 -FASLNSLQELDLSGNSFLGGQLSRNLGKLCNLRTMILSRNNISSEVSDFLDGLSECTNS 342
F+SL SL+ LDLS N LS N+SS LS
Sbjct: 95 SFSSLGSLEHLDLSYN-----YLS-----------------NLSSSW---FKPLSS---- 125
Query: 343 ILLEKLELRFNQFTGILPISL-GSLKNLRHLVLWQNSFLGSIPPSI-GNLTLLKELYLAS 400
L L L N + + SL L L+ L + I LT L+EL + +
Sbjct: 126 --LTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDA 183
Query: 401 NQMNGQKISDSYQHLKNQTELRTLVLNKARISDTISDWFWQLSLTLDELDVAYNELRGRV 460
+ + S + LK+ + L+L+ + + + F ++ +++ L++ +L
Sbjct: 184 SDLQ----SYEPKSLKSIQNVSHLILHMKQHI-LLLEIFVDVTSSVECLELRDTDLDTFH 238
Query: 461 PNSLGFNFPAKVDLSFNNFEGRLLLWSFNVTKLYLRDNSFSGLIPNDIGQNLPFLTDLGN 520
+ L N+ + + + D S ++ L
Sbjct: 239 FSEL-------STGETNSLIKKFTF-----RNVKITDESLFQVMKL-----------LNQ 275
Query: 521 LKQLITLVISNNNLSGEIPLLFSNISFLYILDMSNNSL 558
+ L+ L S N L +F ++ L + + N
Sbjct: 276 ISGLLELEFSRNQLKSVPDGIFDRLTSLQKIWLHTNPW 313
|
| >2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353 | Back alignment and structure |
|---|
Score = 71.7 bits (176), Expect = 1e-13
Identities = 36/198 (18%), Positives = 70/198 (35%), Gaps = 16/198 (8%)
Query: 112 LKDLEYLDLSMNNFTGFQVPEFIGSLKELRYLNLSGSFFSGTIP-QTLGNLSNLLYLDLN 170
L L +L+L N + L +L+ L + I + L+ L L+++
Sbjct: 123 LSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEID 182
Query: 171 NFLDQSNQIDLEWLSGLSSLVYFNLGGADLSKAGAYWLEVFNKLHSFVELHLPNCNLPSL 230
+ + L + ++ + L + S L L + +L +
Sbjct: 183 A--SDLQSYEPKSLKSIQNVSHLILHMKQHILLLEI---FVDVTSSVECLELRDTDLDTF 237
Query: 231 PL-SFPSLNFAS------LQVLDLSNNDFNSTTPHWLFNITSLLCLDLGSNDLQGDIPDG 283
+ S + + +++ L I+ LL L+ N L+ +PDG
Sbjct: 238 HFSELSTGETNSLIKKFTFRNVKITDESLFQ-VMKLLNQISGLLELEFSRNQLKS-VPDG 295
Query: 284 -FASLNSLQELDLSGNSF 300
F L SLQ++ L N +
Sbjct: 296 IFDRLTSLQKIWLHTNPW 313
|
| >2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353 | Back alignment and structure |
|---|
Score = 58.2 bits (141), Expect = 3e-09
Identities = 40/244 (16%), Positives = 78/244 (31%), Gaps = 38/244 (15%)
Query: 345 LEKLELRFNQFTGILPISLGSLKNLRHLVLWQNSFLGSIPPSI-GNLTLLKELYLASNQM 403
++ L+L N+ T I L NL+ LVL N + +I +L L+ L L+ N +
Sbjct: 54 VKSLDLSNNRITYISNSDLQRCVNLQALVLTSNG-INTIEEDSFSSLGSLEHLDLSYNYL 112
Query: 404 NGQKISDSYQHLKNQTELRTLVLNKARISDTISDWFWQLSLTLDELDVAYNELRGRVPNS 463
+S S+ K + L L L + L L V + ++
Sbjct: 113 --SNLSSSW--FKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQR- 167
Query: 464 LGFNFPAKVDLSFNNFEGRLLLWSFNVTKLYLRDNSFSGLIPNDIGQNLPFLTDLGNLKQ 523
+F G L +L + + P L +++
Sbjct: 168 -------------KDFAGLTFL-----EELEIDASDLQSYEPKS----------LKSIQN 199
Query: 524 LITLVISNNNLSGEIPLLFSNISFLYILDMSNNSLSGSTPESIGSLRTVKF---LVLRNN 580
+ L++ + + S + L++ + L + + T RN
Sbjct: 200 VSHLILHMKQHILLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNV 259
Query: 581 YLSG 584
++
Sbjct: 260 KITD 263
|
| >2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353 | Back alignment and structure |
|---|
Score = 49.0 bits (117), Expect = 2e-06
Identities = 44/231 (19%), Positives = 74/231 (32%), Gaps = 37/231 (16%)
Query: 368 NLRHLVLWQNSFLGSIPPSI-GNLTLLKELYLASNQMNGQKISDSYQHLKNQTELRTLVL 426
++ L L N + I S L+ L L SN + I + + L L L
Sbjct: 53 AVKSLDLSNNR-ITYISNSDLQRCVNLQALVLTSNGI--NTIEE--DSFSSLGSLEHLDL 107
Query: 427 NKARISDTISDWFWQLSLTLDELDVAYNELRGRVPNSLGFNFPAKVDLSFNNFEGRLLLW 486
+ +S+ S WF LS +L L++ N + SL F++ +L
Sbjct: 108 SYNYLSNLSSSWFKPLS-SLTFLNLLGNPYKTLGETSL-----------FSHLTKLQILR 155
Query: 487 SFNVTKL-YLRDNSFSGLIPNDIGQNLPFLTDLGNLKQLITLVISNNNLSGEIPLLFSNI 545
N+ ++ F+GL L L I ++L P +I
Sbjct: 156 VGNMDTFTKIQRKDFAGL------------------TFLEELEIDASDLQSYEPKSLKSI 197
Query: 546 SFLYILDMSNNSLSGSTPESIGSLRTVKFLVLRNNYLSGKLPLSLKNCTFQ 596
+ L + + +V+ L LR+ L L
Sbjct: 198 QNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETN 248
|
| >1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605 | Back alignment and structure |
|---|
Score = 96.3 bits (239), Expect = 5e-21
Identities = 54/280 (19%), Positives = 94/280 (33%), Gaps = 35/280 (12%)
Query: 158 LGNLSNLLYLDLNNFLDQSNQI-DLEWLSGLSSLVYFNLGGADLSKAGAYWLEVFNKLHS 216
+ + +L + D + L+S+ +D+ ++ L +
Sbjct: 17 DDAFAETIKDNLKK-----KSVTDAVTQNELNSIDQIIANNSDIKS-----VQGIQYLPN 66
Query: 217 FVELHLPNCNLPSLPLSFPSLNFASLQVLDLSNNDFNSTTPHWLFNITSLLCLDLGSNDL 276
+L L L + P N +L L L N + L ++ L L L N +
Sbjct: 67 VTKLFLNGNKLTDI---KPLTNLKNLGWLFLDENKIKDLSS--LKDLKKLKSLSLEHNGI 121
Query: 277 QGDIPDGFASLNSLQELDLSGNSFLGGQLSR--NLGKLCNLRTMILSRNNISSEVSDFLD 334
DI +G L L+ L L N +++ L +L L T+ L N IS +
Sbjct: 122 S-DI-NGLVHLPQLESLYLGNN-----KITDITVLSRLTKLDTLSLEDNQISD-----IV 169
Query: 335 GLSECTNSILLEKLELRFNQFTGILPISLGSLKNLRHLVLWQNSFLGSIPPSIGNLTLLK 394
L+ T L+ L L N + + ++ LKNL L L+ L NL +
Sbjct: 170 PLAGLTK---LQNLYLSKNHISDLRALA--GLKNLDVLELFSQECLNKPINHQSNLVVPN 224
Query: 395 ELYLASNQMNGQKISDSYQHLKNQTELRTLVLNKARISDT 434
+ + +I + L +S
Sbjct: 225 TVKNTDGSLVTPEIISDDGDYEKPNVKWHLPEFTNEVSFI 264
|
| >1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605 | Back alignment and structure |
|---|
Score = 91.7 bits (227), Expect = 1e-19
Identities = 59/233 (25%), Positives = 88/233 (37%), Gaps = 32/233 (13%)
Query: 234 FPSLNFASLQVLDLSNNDFNSTTPHWLFNITSLLCLDLGSNDLQGDIPDGFASLNSLQEL 293
FP FA +L + S+ + ++D++ + G L ++ +L
Sbjct: 15 FPDDAFAETIKDNLKKKSVTDAVT--QNELNSIDQIIANNSDIK-SV-QGIQYLPNVTKL 70
Query: 294 DLSGNSFLGGQLSR--NLGKLCNLRTMILSRNNISSEVSDFLDGLSECTNSILLEKLELR 351
L+GN +L+ L L NL + L N I L L + L+ L L
Sbjct: 71 FLNGN-----KLTDIKPLTNLKNLGWLFLDENKIKD-----LSSLKDLKK---LKSLSLE 117
Query: 352 FNQFTGILPISLGSLKNLRHLVLWQNSFLGSIPPSIGNLTLLKELYLASNQMNGQKISDS 411
N + I + L L L L N + I + LT L L L NQ ISD
Sbjct: 118 HNGISDINGLV--HLPQLESLYLGNNK-ITDITV-LSRLTKLDTLSLEDNQ-----ISD- 167
Query: 412 YQHLKNQTELRTLVLNKARISDTISDWFWQLSLTLDELDVAYNELRGRVPNSL 464
L T+L+ L L+K ISD + L LD L++ E + N
Sbjct: 168 IVPLAGLTKLQNLYLSKNHISD-LRA-LAGLK-NLDVLELFSQECLNKPINHQ 217
|
| >1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605 | Back alignment and structure |
|---|
Score = 82.1 bits (202), Expect = 1e-16
Identities = 67/322 (20%), Positives = 119/322 (36%), Gaps = 62/322 (19%)
Query: 269 LDLGSNDLQGDIPDGFASLNSLQELDLSGNSFLGGQLSRNLGKLCNLRTMILSRNNISSE 328
S ++ PD + + +L S + +L ++ +I + ++I S
Sbjct: 4 TITVSTPIKQIFPD--DAFAETIKDNLKKKSVTD---AVTQNELNSIDQIIANNSDIKS- 57
Query: 329 VSDFLDGLSECTNSILLEKLELRFNQFTGILPISLGSLKNLRHLVLWQNSFLGSIPPSIG 388
+ G+ N + KL L N+ T I P++ +LKNL L L +N + + +
Sbjct: 58 ----VQGIQYLPN---VTKLFLNGNKLTDIKPLT--NLKNLGWLFLDENK-IKDLSS-LK 106
Query: 389 NLTLLKELYLASNQMNGQKISDSYQHLKNQTELRTLVLNKARISDTISDWFWQLSLTLDE 448
+L LK L L N ISD L + +L +L L +I+D I+ +L+ LD
Sbjct: 107 DLKKLKSLSLEHNG-----ISD-INGLVHLPQLESLYLGNNKITD-ITV-LSRLT-KLDT 157
Query: 449 LDVAYNELRGRVPNSLGFNFPAKVDLSFNNFEGRLLLWSFNVTKLYLRDNSFSGLIPNDI 508
L + N++ D+ L + LYL N
Sbjct: 158 LSLEDNQIS---------------DIVP-------LAGLTKLQNLYLSKN---------- 185
Query: 509 GQNLPFLTDLGNLKQLITLVISNNNLSGEIPLLFSNISFLYILDMSNNSLSGSTPESIGS 568
++ L L LK L L + + + SN+ + ++ SL TPE I
Sbjct: 186 --HISDLRALAGLKNLDVLELFSQECLNKPINHQSNLVVPNTVKNTDGSL--VTPEIISD 241
Query: 569 LRTVKFLVLRNNYLSGKLPLSL 590
+ ++ + +S
Sbjct: 242 DGDYEKPNVKWHLPEFTNEVSF 263
|
| >1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605 | Back alignment and structure |
|---|
Score = 80.5 bits (198), Expect = 4e-16
Identities = 52/260 (20%), Positives = 86/260 (33%), Gaps = 60/260 (23%)
Query: 107 PSLLQLKDLEYLDLSMNNFTGFQVPEFIGSLKELRYLNLSGSFFSGTIPQTLGNLSNLLY 166
+ +L ++ + + ++ + I L + L L+G+ + P L NL NL +
Sbjct: 37 VTQNELNSIDQIIANNSDIKSV---QGIQYLPNVTKLFLNGNKLTDIKP--LTNLKNLGW 91
Query: 167 LDLNNFLDQSNQI-DLEWLSGLSSLVYFNLGGADLSKAGAYWLEVFNKLHSFVELHLPNC 225
L L+ N+I DL L L L +L +S + L L+L N
Sbjct: 92 LFLDE-----NKIKDLSSLKDLKKLKSLSLEHNGISD-----INGLVHLPQLESLYLGNN 141
Query: 226 NLPSL-PLSFPSLNFASLQVLDLSNNDFNSTTPHWLFNITSLLCLDLGSNDLQGDIPDGF 284
+ + LS L L L +N I+ +
Sbjct: 142 KITDITVLS----RLTKLDTLSLEDN-----------QISDI---------------VPL 171
Query: 285 ASLNSLQELDLSGNSFLGGQLS--RNLGKLCNLRTMILSRNNISSEVSDFLDGLSECTNS 342
A L LQ L LS N +S R L L NL + L ++ + L
Sbjct: 172 AGLTKLQNLYLSKN-----HISDLRALAGLKNLDVLELFSQECLNKPINHQSNL------ 220
Query: 343 ILLEKLELRFNQFTGILPIS 362
++ ++ IS
Sbjct: 221 VVPNTVKNTDGSLVTPEIIS 240
|
| >1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605 | Back alignment and structure |
|---|
Score = 45.9 bits (108), Expect = 3e-05
Identities = 33/162 (20%), Positives = 58/162 (35%), Gaps = 15/162 (9%)
Query: 104 EISPSLLQLKDLEYLDLSMNNFTGFQVPEFIGSLKELRYLNLSGSFFSGTIPQTLGNLSN 163
+I+ L+ L LE L L N T + L +L L+L + S +P L L+
Sbjct: 123 DING-LVHLPQLESLYLGNNKITDI---TVLSRLTKLDTLSLEDNQISDIVP--LAGLTK 176
Query: 164 LLYLDLNNFLDQSNQI-DLEWLSGLSSLVYFNLGGADLSKAGAYWLEVFNKLHSFVELHL 222
L L L+ N I DL L+GL +L L + ++ +
Sbjct: 177 LQNLYLSK-----NHISDLRALAGLKNLDVLELFSQECLNKPINHQSNLVVPNT---VKN 228
Query: 223 PNCNLPSLPLSFPSLNFASLQVLDLSNNDFNSTTPHWLFNIT 264
+ +L + + ++ V N + + +T
Sbjct: 229 TDGSLVTPEIISDDGDYEKPNVKWHLPEFTNEVSFIFYQPVT 270
|
| >2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332 | Back alignment and structure |
|---|
Score = 90.8 bits (226), Expect = 4e-20
Identities = 67/342 (19%), Positives = 113/342 (33%), Gaps = 52/342 (15%)
Query: 219 ELHLPNCNLPSLPLSFPSLNFASLQVLDLSNNDFNSTTPHWLFNITSLLCLDLGSNDLQG 278
+ + L ++P +LDL NND + + L L L +N +
Sbjct: 37 VVQCSDLGLKAVPKEISP----DTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISK 92
Query: 279 DIPDGFASLNSLQELDLSGNSFLGGQLSRNLGKLCNLRTMILSRNNISSEVSDFLDGLSE 338
F+ L LQ+L +S N ++ NL +L + + N I GL
Sbjct: 93 IHEKAFSPLRKLQKLYISKNHL--VEIPPNL--PSSLVELRIHDNRIRKVPKGVFSGLRN 148
Query: 339 CTNSILLEKLELRFNQFTGILPISLGSLK--NLRHLVLWQNSFLGSIPPSIGNLTLLKEL 396
+ +E+ N G+ L +L + + L IP L EL
Sbjct: 149 ------MNCIEMGGNPLENS-GFEPGAFDGLKLNYLRISEAK-LTGIPK--DLPETLNEL 198
Query: 397 YLASNQMNGQKISDSYQHLKNQTELRTLVLNKARISDTISDWFWQLSLTLDELDVAYNEL 456
+L N++ Q I L ++L L L +I + L TL EL + N+L
Sbjct: 199 HLDHNKI--QAIELED--LLRYSKLYRLGLGHNQIRMIENGSLSFLP-TLRELHLDNNKL 253
Query: 457 RGRVPNSLGFNFPAKVDLSFNNFEGRLLLWSFNVTKLYLRDNSFSGLIPNDIGQNLPFLT 516
RVP L + + +YL N+ + + ND +
Sbjct: 254 S-RVPAGL-PDLK-------------------LLQVVYLHTNNITKVGVNDFCP----VG 288
Query: 517 DLGNLKQLITLVISNNNLSGEI--PLLFSNISFLYILDMSNN 556
+ + NN + P F ++ + N
Sbjct: 289 FGVKRAYYNGISLFNNPVPYWEVQPATFRCVTDRLAIQFGNY 330
|
| >2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332 | Back alignment and structure |
|---|
Score = 85.5 bits (212), Expect = 3e-18
Identities = 58/300 (19%), Positives = 97/300 (32%), Gaps = 32/300 (10%)
Query: 113 KDLEYLDLSMNNFTGFQVPEFIGSLKELRYLNLSGSFFSGTIPQTLGNLSNLLYLDLNNF 172
D LDL N+ + + +F G L+ L L L + S + L L L ++
Sbjct: 54 PDTTLLDLQNNDISELRKDDFKG-LQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISK- 111
Query: 173 LDQSNQIDLEWLSGLSSLVYFNLGGADLSKAGAYWLEVFNKLHSFVELHLPNCNLPSLPL 232
N + + SSLV + + K VF+ L + + + L +
Sbjct: 112 ----NHLVEIPPNLPSSLVELRIHDNRIRKVPKG---VFSGLRNMNCIEMGGNPLENSGF 164
Query: 233 SFPSLNFASLQVLDLSNNDFNSTTPHWLFNITSLLCLDLGSNDLQGDIPDG-FASLNSLQ 291
+ + L L +S + P L +L L L N +Q I + L
Sbjct: 165 EPGAFDGLKLNYLRISEAKL-TGIPKDLP--ETLNELHLDHNKIQ-AIELEDLLRYSKLY 220
Query: 292 ELDLSGNSFLGGQLSRN-LGKLCNLRTMILSRNNISSEVSDFLDGLSECTNSILLEKLEL 350
L L N + L L LR + L N +S V L L L+ + L
Sbjct: 221 RLGLGHNQI--RMIENGSLSFLPTLRELHLDNNKLSR-VPAGLPDLKL------LQVVYL 271
Query: 351 RFNQFTGILP------ISLGSLKNLRHLVLWQNSF-LGSIPPSI-GNLTLLKELYLASNQ 402
N T + + L+ N + P+ +T + + +
Sbjct: 272 HTNNITKVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQPATFRCVTDRLAIQFGNYK 331
|
| >2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332 | Back alignment and structure |
|---|
Score = 84.3 bits (209), Expect = 7e-18
Identities = 44/269 (16%), Positives = 85/269 (31%), Gaps = 42/269 (15%)
Query: 112 LKDLEYLDLSMNNFTGFQVPEFIGSLKELRYLNLSGSFFSGTIPQTLGNLSNLLYLDLNN 171
L+ L+ L +S N+ ++P L L + + L N+ +++
Sbjct: 101 LRKLQKLYISKNHLV--EIPP--NLPSSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGG 156
Query: 172 FLDQSNQIDLEWLSGLSSLVYFNLGGADLSKAGAYWLEVFNKLHSFVELHLPNCNLPSLP 231
N ++ F+ L L + L +P
Sbjct: 157 -----NPLENSGFEP----------------------GAFDGL-KLNYLRISEAKLTGIP 188
Query: 232 LSFPSLNFASLQVLDLSNNDFNSTTPHWLFNITSLLCLDLGSNDLQGDIPDG-FASLNSL 290
+L L L +N + L + L L LG N ++ I +G + L +L
Sbjct: 189 KDL----PETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIR-MIENGSLSFLPTL 243
Query: 291 QELDLSGNSFLGGQLSRNLGKLCNLRTMILSRNNISSEVSDFLDGLSECTNSILLEKLEL 350
+EL L N ++ L L L+ + L NNI+ + + + L
Sbjct: 244 RELHLDNNKL--SRVPAGLPDLKLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISL 301
Query: 351 RFNQ--FTGILPISLGSLKNLRHLVLWQN 377
N + + P + + + +
Sbjct: 302 FNNPVPYWEVQPATFRCVTDRLAIQFGNY 330
|
| >2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332 | Back alignment and structure |
|---|
Score = 73.5 bits (181), Expect = 3e-14
Identities = 50/270 (18%), Positives = 97/270 (35%), Gaps = 47/270 (17%)
Query: 314 NLRTMILSRNNISSEVSDFLDGLSECTNSILLEKLELRFNQFTGILPISLGSLKNLRHLV 373
+ + L N+IS D GL L L L N+ + I + L+ L+ L
Sbjct: 55 DTTLLDLQNNDISELRKDDFKGLQH------LYALVLVNNKISKIHEKAFSPLRKLQKLY 108
Query: 374 LWQNSFLGSIPPSIGNLTLLKELYLASNQMNGQKISDSYQHLKNQTELRTLVLNKARISD 433
+ +N L IPP++ + L EL + N++ +K+ + + + + +
Sbjct: 109 ISKNH-LVEIPPNL--PSSLVELRIHDNRI--RKVPKG--VFSGLRNMNCIEMGGNPLEN 161
Query: 434 TISDWFWQLSLTLDELDVAYNELRGRVPNSLGFNFPAKVDLSFNNFEGRLLLWSFNVTKL 493
+ + L L+ L ++ +L +P L + +L
Sbjct: 162 SGFEPGAFDGLKLNYLRISEAKLT-GIPKDL---PE-------------------TLNEL 198
Query: 494 YLRDNSFSGLIPNDIGQNLPFLTDLGNLKQLITLVISNNNLSGEIPLLFSNISFLYILDM 553
+L N + D L +L L + +N + S + L L +
Sbjct: 199 HLDHNKIQAIELED----------LLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHL 248
Query: 554 SNNSLSGSTPESIGSLRTVKFLVLRNNYLS 583
NN LS P + L+ ++ + L N ++
Sbjct: 249 DNNKLS-RVPAGLPDLKLLQVVYLHTNNIT 277
|
| >2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332 | Back alignment and structure |
|---|
Score = 67.0 bits (164), Expect = 3e-12
Identities = 38/204 (18%), Positives = 68/204 (33%), Gaps = 19/204 (9%)
Query: 104 EISPSLLQ-LKDLEYLDLSMNNFTGFQVPEFIGSLKELRYLNLSGSFFSGTIPQTLGNLS 162
++ + L+++ +++ N +L YL +S + +G L+
Sbjct: 137 KVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGLKLNYLRISEAKLTGIPKDLPETLN 196
Query: 163 NLLYLDLNNFLDQSNQIDLEWLSGLSSLVYFNLGGADLSKAGAYWLEVFNKLHSFVELHL 222
L+LD N I+LE L S L LG + + L + ELHL
Sbjct: 197 E-LHLDHNKI----QAIELEDLLRYSKLYRLGLGHNQIRMIEN---GSLSFLPTLRELHL 248
Query: 223 PNCNLPSLPLSFPSLNFASLQVLDLSNNDFNS------TTPHWLFNITSLLCLDLGSNDL 276
N L +P P L LQV+ L N+ + + L +N +
Sbjct: 249 DNNKLSRVPAGLPDLK--LLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFNNPV 306
Query: 277 Q-GDIPDG-FASLNSLQELDLSGN 298
++ F + +
Sbjct: 307 PYWEVQPATFRCVTDRLAIQFGNY 330
|
| >3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622 | Back alignment and structure |
|---|
Score = 93.4 bits (232), Expect = 4e-20
Identities = 58/292 (19%), Positives = 100/292 (34%), Gaps = 55/292 (18%)
Query: 112 LKDLEYLDLSMNNFTGFQVPEFIGSLKELRYLNLSGSFFSGTIPQTLGNLSNLLYLDLNN 171
+ L + NN T +P L R L +SG+ + ++P L L
Sbjct: 60 PAHITTLVIPDNNLT--SLPALPPEL---RTLEVSGNQLT-SLPVLPPGLLELSIFSNPL 113
Query: 172 FLDQSNQIDLEWLSGLSSLVYFNLGGADLSKAGAYWLEVFNKLHSFVELHLPNCNLPSLP 231
+ S L + G L+ + EL + + L SLP
Sbjct: 114 -----THLPAL----PSGLCKLWIFGNQLT-------SLPVLPPGLQELSVSDNQLASLP 157
Query: 232 LSFPSLNFASLQVLDLSNNDFNSTTPHWLFNITSLLCLDLGSNDLQGDIPDGFASLNSLQ 291
+ L L NN S + L L + N L +P + L
Sbjct: 158 ALP-----SELCKLWAYNNQLTSLPM----LPSGLQELSVSDNQLA-SLPT---LPSELY 204
Query: 292 ELDLSGNSFLGGQLSRNLGKLCNLRTMILSRNNISSEVSDFLDGLSECTNSILLEKLELR 351
+L N +L+ L+ +I+S N ++S L + L++L +
Sbjct: 205 KLWAYNN-----RLTSLPALPSGLKELIVSGNRLTS--------LPVLPSE--LKELMVS 249
Query: 352 FNQFTGILPISLGSLKNLRHLVLWQNSFLGSIPPSIGNLTLLKELYLASNQM 403
N+ T LP+ L L +++N L +P S+ +L+ + L N +
Sbjct: 250 GNRLT-SLPMLPS---GLLSLSVYRNQ-LTRLPESLIHLSSETTVNLEGNPL 296
|
| >3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622 | Back alignment and structure |
|---|
Score = 89.2 bits (221), Expect = 9e-19
Identities = 63/376 (16%), Positives = 111/376 (29%), Gaps = 87/376 (23%)
Query: 219 ELHLPNCNLPSLPLSFPSLNFASLQVLDLSNNDFNSTTPHWLFNITSLLCLDLGSNDLQG 278
L++ L +LP P+ + L + +N+ S L L++ N L
Sbjct: 44 VLNVGESGLTTLPDCLPA----HITTLVIPDNNLTSLPA----LPPELRTLEVSGNQLT- 94
Query: 279 DIPDGFASLNSLQELDLSGNSFLGGQLSRNLGKLCNLRTMILSRNNISSEVSDFLDGLSE 338
+P L L L LC L + N ++S L
Sbjct: 95 SLPVLPPGLLELSIFSNPLT-----HLPALPSGLCKLW---IFGNQLTS--------LPV 138
Query: 339 CTNSILLEKLELRFNQFTGILPISLGSLKNLRHLVLWQNSFLGSIPPSIGNLTLLKELYL 398
L++L + NQ LP L L N+ L S+P L EL +
Sbjct: 139 LPPG--LQELSVSDNQLAS-LPALPSELCKLWAY----NNQLTSLPMLPSGLQ---ELSV 188
Query: 399 ASNQMNGQKISDSYQHLKNQTELRTLVLNKARISDTISDWFWQLSLTLDELDVAYNELRG 458
+ NQ+ + L +L + S L EL V+ N L
Sbjct: 189 SDNQL--ASLPTLPSEL---YKLWAYNNRLTSLPALPS--------GLKELIVSGNRLT- 234
Query: 459 RVPNSLGFNFPAKVDLSFNNFEGRLLLWSFNVTKLYLRDNSFSGLIPNDIGQNLPFLTDL 518
+P + +L + N + L P
Sbjct: 235 SLPVLPS-----------------------ELKELMVSGNRLTSL-PMLPSG-------- 262
Query: 519 GNLKQLITLVISNNNLSGEIPLLFSNISFLYILDMSNNSLSGSTPESIGSLRTVKFLVLR 578
L++L + N L+ +P ++S +++ N LS T +++ + +
Sbjct: 263 -----LLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTLQALREITSAPGYSGP 316
Query: 579 NNYLSGKLPLSLKNCT 594
+ +
Sbjct: 317 IIRFDMAGASAPRETR 332
|
| >3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622 | Back alignment and structure |
|---|
Score = 78.4 bits (193), Expect = 2e-15
Identities = 62/318 (19%), Positives = 109/318 (34%), Gaps = 78/318 (24%)
Query: 285 ASLNSLQELDLSGNSFLGGQLSRNLGKLCNLRTMILSRNNISSEVSDFLDGLSECTNSIL 344
N L++ + L L ++ T+++ NN++S E
Sbjct: 37 CLNNGNAVLNVGESGL--TTLPDCLPA--HITTLVIPDNNLTS----LPALPPE------ 82
Query: 345 LEKLELRFNQFTGILPISLGSLKNLRHLVLWQNSFLGSIPPSIGNLTLLKELYLASNQMN 404
L LE+ NQ T LP+ L L +P L +L++ NQ+
Sbjct: 83 LRTLEVSGNQLT-SLPVLPPGLLELSIFSNPLT----HLPALPSGLC---KLWIFGNQLT 134
Query: 405 GQKISDSYQHLKNQTELRTLVLNKARISDTISDWFWQLSLTLDELDVAYNELRGRVPNSL 464
+ L+ L ++ +++ ++ +L +L N+L +P
Sbjct: 135 --SLPVLPPGLQE------LSVSDNQLA-SLPALPSELC----KLWAYNNQLT-SLPMLP 180
Query: 465 GFNFPAKVDLSFNNFEGRLLLWSFNVTKLYLRDNSFSGLIPNDIGQNLPFLTDLGN---- 520
+ +L + DN + L P L L N
Sbjct: 181 S-----------------------GLQELSVSDNQLASL-PTLPS-ELYKLWAYNNRLTS 215
Query: 521 ----LKQLITLVISNNNLSGEIPLLFSNISFLYILDMSNNSLSGSTPESIGSLRTVKFLV 576
L L++S N L+ +P+L S L L +S N L+ S P L + L
Sbjct: 216 LPALPSGLKELIVSGNRLT-SLPVLPSE---LKELMVSGNRLT-SLPMLPSGLLS---LS 267
Query: 577 LRNNYLSGKLPLSLKNCT 594
+ N L+ +LP SL + +
Sbjct: 268 VYRNQLT-RLPESLIHLS 284
|
| >3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622 | Back alignment and structure |
|---|
Score = 78.0 bits (192), Expect = 3e-15
Identities = 53/334 (15%), Positives = 100/334 (29%), Gaps = 53/334 (15%)
Query: 104 EISPSLLQLKDLEYLDLSMNNFTGFQVPEFIGSLKELRYLNLSGSFFSGTIPQTLGNLSN 163
+ L +L + + L L + G+ + ++P L
Sbjct: 95 SLPVLPPGLLELSIFSNPLTHLP--------ALPSGLCKLWIFGNQLT-SLPVLPPGLQE 145
Query: 164 LLYLDLNNFLDQSNQIDLEWLSGLSSLVYFNLGGADLSKAGAYWLEVFNKLHSFVELHLP 223
L +++ NQ+ + S L L+ + EL +
Sbjct: 146 ---LSVSD-----NQLA-SLPALPSELCKLWAYNNQLT-------SLPMLPSGLQELSVS 189
Query: 224 NCNLPSLPLSFPSLNFASLQVLDLSNNDFNSTTPHWLFNITSLLCLDLGSNDLQGDIPDG 283
+ L SLP L L NN S + L L + N L +P
Sbjct: 190 DNQLASLPTLPS-----ELYKLWAYNNRLTSLPA----LPSGLKELIVSGNRLT-SLP-- 237
Query: 284 FASLNSLQELDLSGNSFLGGQLSRNLGKLCNLRTMILSRNNISSEVSDFLDGLSECTNSI 343
+ L+EL +SGN +L+ L ++ + RN ++ + L ++
Sbjct: 238 -VLPSELKELMVSGN-----RLTSLPMLPSGLLSLSVYRNQLTR----LPESLIHLSS-- 285
Query: 344 LLEKLELRFNQFTGI---LPISLGSLKNLRHLVLWQNSFLGSIPPSIGNLTLLKELYLAS 400
+ L N + + S ++ + S P L L +L
Sbjct: 286 -ETTVNLEGNPLSERTLQALREITSAPGYSGPIIRFDMAGASAPRETRALHLAAADWLVP 344
Query: 401 NQMNGQKISDSYQHLKNQTELRTLVLNKARISDT 434
+ +D + + L R+S+T
Sbjct: 345 AREGEPAPADRWHMFGQEDNADAFSLFLDRLSET 378
|
| >3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440 | Back alignment and structure |
|---|
Score = 91.0 bits (226), Expect = 1e-19
Identities = 57/257 (22%), Positives = 101/257 (39%), Gaps = 26/257 (10%)
Query: 226 NLPSLPLSFPSLNFASLQVLDLSNNDFNSTTPHWLFNITSLLCLDLGSNDLQGDIPDG-F 284
NL +P + ++L+L N + ++ L L L N ++ I G F
Sbjct: 54 NLREVPDGIS----TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIR-TIEIGAF 108
Query: 285 ASLNSLQELDLSGN--SFLGGQLSRNLGKLCNLRTMILSRNNISSEVSDFLDGLSECTNS 342
L +L L+L N + + L KL L L N I S S + +
Sbjct: 109 NGLANLNTLELFDNRLTTIPNGAFVYLSKLKELW---LRNNPIESIPSYAFNRIPS---- 161
Query: 343 ILLEKLEL-RFNQFTGILPISLGSLKNLRHLVLWQNSFLGSIPPSIGNLTLLKELYLASN 401
L +L+L + + I + L NLR+L L + P++ L L EL L+ N
Sbjct: 162 --LRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNL--REIPNLTPLIKLDELDLSGN 217
Query: 402 QMNGQKISDSYQHLKNQTELRTLVLNKARISDTISDWFWQLSLTLDELDVAYNELRGRVP 461
+ I + L+ L + +++I + F L +L E+++A+N L +P
Sbjct: 218 HL--SAIRP--GSFQGLMHLQKLWMIQSQIQVIERNAFDNLQ-SLVEINLAHNNLT-LLP 271
Query: 462 NSLGFNFPAKVDLSFNN 478
+ L + ++
Sbjct: 272 HDLFTPLHHLERIHLHH 288
|
| >3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440 | Back alignment and structure |
|---|
Score = 90.6 bits (225), Expect = 2e-19
Identities = 57/268 (21%), Positives = 98/268 (36%), Gaps = 43/268 (16%)
Query: 114 DLEYLDLSMNNFTGFQVPEFIGSLKELRYLNLSGSFFSGTIPQTLGNLSNLLYLDLNNFL 173
+ L+L N +V F L+ L L LS + L+NL L+L +
Sbjct: 65 NTRLLNLHENQIQIIKVNSFKH-LRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFD-- 121
Query: 174 DQSNQIDLEWLSGLSSLVYFNLGGADLSKAGAYWLEVFNKLHSFVELHLPNCNLPSLPLS 233
N++ + + + F L EL L N + S+P
Sbjct: 122 ---NRL-----TTIPN-------------------GAFVYLSKLKELWLRNNPIESIPSY 154
Query: 234 FPSLNFASLQVLDLS-NNDFNSTTPHWLFNITSLLCLDLGSNDLQGDIPDGFASLNSLQE 292
+ SL+ LDL + + +++L L+L +L+ +IP+ L L E
Sbjct: 155 AFN-RIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLR-EIPN-LTPLIKLDE 211
Query: 293 LDLSGNSFLGGQLSRN-LGKLCNLRTMILSRNNISSEVSDFLDGLSECTNSILLEKLELR 351
LDLSGN + L +L+ + + ++ I + D L L ++ L
Sbjct: 212 LDLSGNHL--SAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQS------LVEINLA 263
Query: 352 FNQFTGILPISLGSLKNLRHLVLWQNSF 379
N T + L +L + L N +
Sbjct: 264 HNNLTLLPHDLFTPLHHLERIHLHHNPW 291
|
| >3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440 | Back alignment and structure |
|---|
Score = 85.6 bits (212), Expect = 6e-18
Identities = 58/220 (26%), Positives = 86/220 (39%), Gaps = 19/220 (8%)
Query: 104 EISPSLLQ-LKDLEYLDLSMNNFTGFQVPEFIGSLKELRYLNLSGSFFSGTIPQTLGNLS 162
I + + L+ LE L LS N+ ++ F G L L L L + + LS
Sbjct: 78 IIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNG-LANLNTLELFDNRLTTIPNGAFVYLS 136
Query: 163 NLLYLDLNNFLDQSNQI---DLEWLSGLSSLVYFNLGGA-DLSKAGAYWLEVFNKLHSFV 218
L L L N N I + + SL +LG LS F L +
Sbjct: 137 KLKELWLRN-----NPIESIPSYAFNRIPSLRRLDLGELKRLSYISE---GAFEGLSNLR 188
Query: 219 ELHLPNCNLPSLPLSFPSLNFASLQVLDLSNNDFNSTTPHWLFNITSLLCLDLGSNDLQG 278
L+L CNL +P + L L LDLS N ++ P + L L + + +Q
Sbjct: 189 YLNLAMCNLREIP-NLTPL--IKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQV 245
Query: 279 DIPDGFASLNSLQELDLSGN--SFLGGQLSRNLGKLCNLR 316
+ F +L SL E++L+ N + L L L L +
Sbjct: 246 IERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLERIH 285
|
| >3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440 | Back alignment and structure |
|---|
Score = 82.9 bits (205), Expect = 4e-17
Identities = 47/190 (24%), Positives = 76/190 (40%), Gaps = 10/190 (5%)
Query: 112 LKDLEYLDLSMNNFTGFQVPEFIGSLKELRYLNLSGSFFSGTIPQTLGNLSNLLYLDLNN 171
L +L L+L N T F+ L +L+ L L + + +L LDL
Sbjct: 111 LANLNTLELFDNRLTTIPNGAFVY-LSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGE 169
Query: 172 FLDQSNQIDLEWLSGLSSLVYFNLGGADLSKAGAYWLEVFNKLHSFVELHLPNCNLPSLP 231
+ + I GLS+L Y NL +L + + L EL L +L ++
Sbjct: 170 L-KRLSYISEGAFEGLSNLRYLNLAMCNLRE-----IPNLTPLIKLDELDLSGNHLSAIR 223
Query: 232 L-SFPSLNFASLQVLDLSNNDFNSTTPHWLFNITSLLCLDLGSNDLQGDIPDGFASLNSL 290
SF L LQ L + + + N+ SL+ ++L N+L D F L+ L
Sbjct: 224 PGSFQGL--MHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHL 281
Query: 291 QELDLSGNSF 300
+ + L N +
Sbjct: 282 ERIHLHHNPW 291
|
| >3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440 | Back alignment and structure |
|---|
Score = 75.6 bits (186), Expect = 1e-14
Identities = 61/269 (22%), Positives = 95/269 (35%), Gaps = 46/269 (17%)
Query: 314 NLRTMILSRNNISSEVSDFLDGLSECTNSILLEKLELRFNQFTGILPISLGSLKNLRHLV 373
N R + L N I + L LE L+L N I + L NL L
Sbjct: 65 NTRLLNLHENQIQIIKVNSFKHLRH------LEILQLSRNHIRTIEIGAFNGLANLNTLE 118
Query: 374 LWQNSFLGSIPPSI-GNLTLLKELYLASNQMNGQKISDSYQHLKNQTELRTLVLNKA-RI 431
L+ N L +IP L+ LKEL+L +N + + I LR L L + R+
Sbjct: 119 LFDNR-LTTIPNGAFVYLSKLKELWLRNNPI--ESIPSY--AFNRIPSLRRLDLGELKRL 173
Query: 432 SDTISDWFWQLSLTLDELDVAYNELRGRVPNSLGFNFPAKVDLSFNNFEGRLLLWSFNVT 491
S F LS L L++A LR P L +
Sbjct: 174 SYISEGAFEGLS-NLRYLNLAMCNLR---------EIPNLTPLI-------------KLD 210
Query: 492 KLYLRDNSFSGLIPNDIGQNLPFLTDLGNLKQLITLVISNNNLSGEIPLLFSNISFLYIL 551
+L L N S + P L L L + + + F N+ L +
Sbjct: 211 ELDLSGNHLSAIRPGS----------FQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEI 260
Query: 552 DMSNNSLSGSTPESIGSLRTVKFLVLRNN 580
++++N+L+ + L ++ + L +N
Sbjct: 261 NLAHNNLTLLPHDLFTPLHHLERIHLHHN 289
|
| >3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440 | Back alignment and structure |
|---|
Score = 70.9 bits (174), Expect = 3e-13
Identities = 54/241 (22%), Positives = 87/241 (36%), Gaps = 40/241 (16%)
Query: 345 LEKLELRFNQFTGILPISLGSLKNLRHLVLWQNSFLGSIPPSI-GNLTLLKELYLASNQM 403
L L NQ I S L++L L L +N + +I L L L L N++
Sbjct: 66 TRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNH-IRTIEIGAFNGLANLNTLELFDNRL 124
Query: 404 NGQKISDSYQHLKNQTELRTLVLNKARISDTISDWFWQLSLTLDELDVA-YNELRGRVPN 462
I + ++L+ L L I S F ++ +L LD+ L
Sbjct: 125 --TTIPN--GAFVYLSKLKELWLRNNPIESIPSYAFNRIP-SLRRLDLGELKRLS----- 174
Query: 463 SLGFNFPAKVDLSFNNFEGRLLLWSFNVTKLYLRDNSFSGLIPNDIGQNLPFLTDLGNLK 522
+S FEG N+ L L NL + +L L
Sbjct: 175 ----------YISEGAFEG-----LSNLRYLNLAMC------------NLREIPNLTPLI 207
Query: 523 QLITLVISNNNLSGEIPLLFSNISFLYILDMSNNSLSGSTPESIGSLRTVKFLVLRNNYL 582
+L L +S N+LS P F + L L M + + + +L+++ + L +N L
Sbjct: 208 KLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNL 267
Query: 583 S 583
+
Sbjct: 268 T 268
|
| >3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440 | Back alignment and structure |
|---|
Score = 47.8 bits (114), Expect = 7e-06
Identities = 22/95 (23%), Positives = 39/95 (41%), Gaps = 10/95 (10%)
Query: 489 NVTKLYLRDNSFSGLIPNDIGQNLPFLTDLGNLKQLITLVISNNNLSGEIPLLFSNISFL 548
N L L +N + N +L+ L L +S N++ F+ ++ L
Sbjct: 65 NTRLLNLHENQIQIIKVNS----------FKHLRHLEILQLSRNHIRTIEIGAFNGLANL 114
Query: 549 YILDMSNNSLSGSTPESIGSLRTVKFLVLRNNYLS 583
L++ +N L+ + L +K L LRNN +
Sbjct: 115 NTLELFDNRLTTIPNGAFVYLSKLKELWLRNNPIE 149
|
| >1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285 | Back alignment and structure |
|---|
Score = 87.7 bits (218), Expect = 2e-19
Identities = 52/208 (25%), Positives = 77/208 (37%), Gaps = 16/208 (7%)
Query: 226 NLPSLPLSFPSLNFASLQVLDLSNNDFNSTTPHWLFNITSLLCLDLGSNDLQGDIPDGFA 285
L ++P+ P A+ Q + L N + +L L L SN L F
Sbjct: 22 GLQAVPVGIP----AASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFT 77
Query: 286 SLNSLQELDLSGNSFLGGQLSRNLGKLCNLRTMILSRNNISSEVSDFLDGLSECTNSILL 345
L L++LDLS N+ L L L T+ L R + GL+ L
Sbjct: 78 GLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAA------L 131
Query: 346 EKLELRFNQFTGILPISLGSLKNLRHLVLWQNSFLGSIPPSI-GNLTLLKELYLASNQMN 404
+ L L+ N + + L NL HL L N + S+P L L L L N++
Sbjct: 132 QYLYLQDNALQALPDDTFRDLGNLTHLFLHGNR-ISSVPERAFRGLHSLDRLLLHQNRV- 189
Query: 405 GQKISDSYQHLKNQTELRTLVLNKARIS 432
+ ++ L TL L +S
Sbjct: 190 -AHVHPHA--FRDLGRLMTLYLFANNLS 214
|
| >1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285 | Back alignment and structure |
|---|
Score = 85.8 bits (213), Expect = 1e-18
Identities = 53/213 (24%), Positives = 77/213 (36%), Gaps = 13/213 (6%)
Query: 114 DLEYLDLSMNNFTGFQVPEFIGSLKELRYLNLSGSFFSGTIPQTLGNLSNLLYLDLNNFL 173
+ + L N + F + L L L + + L+ L LDL++
Sbjct: 33 ASQRIFLHGNRISHVPAASFRA-CRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNA 91
Query: 174 DQSNQIDLEWLSGLSSLVYFNLGGADLSKAGAYWLEVFNKLHSFVELHLPNCNLPSLP-L 232
Q +D GL L +L L + G +F L + L+L + L +LP
Sbjct: 92 -QLRSVDPATFHGLGRLHTLHLDRCGLQELGP---GLFRGLAALQYLYLQDNALQALPDD 147
Query: 233 SFPSLNFASLQVLDLSNNDFNSTTPHWLFNITSLLCLDLGSNDLQGDIPDGFASLNSLQE 292
+F L +L L L N +S + SL L L N + P F L L
Sbjct: 148 TFRDL--GNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMT 205
Query: 293 LDLSGN--SFLGGQLSRNLGKLCNLRTMILSRN 323
L L N S L + L L LR L+ N
Sbjct: 206 LYLFANNLSALPTEALAPLRALQYLR---LNDN 235
|
| >1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285 | Back alignment and structure |
|---|
Score = 82.3 bits (204), Expect = 1e-17
Identities = 52/234 (22%), Positives = 83/234 (35%), Gaps = 28/234 (11%)
Query: 153 TIPQTLGNLSNLLYLDLNNFLDQSNQIDLEWLSGLSSLVYFNLGGADLSKAGAYWLEVFN 212
+P + S ++L N + + +L L L++ A F
Sbjct: 25 AVPVGIPAASQRIFLHGNRI----SHVPAASFRACRNLTILWLHSNVLARIDAA---AFT 77
Query: 213 KLHSFVELHLP-NCNLPSLPLS-FPSLNFASLQVLDLSNNDFNSTTPHWLFNITSLLCLD 270
L +L L N L S+ + F L L L L P + +L L
Sbjct: 78 GLALLEQLDLSDNAQLRSVDPATFHGLG--RLHTLHLDRCGLQELGPGLFRGLAALQYLY 135
Query: 271 LGSNDLQGDIPDG-FASLNSLQELDLSGNSFLGGQLSR----NLGKLCNLRTMILSRNNI 325
L N LQ +PD F L +L L L GN ++S L +L ++L +N +
Sbjct: 136 LQDNALQ-ALPDDTFRDLGNLTHLFLHGN-----RISSVPERAFRGLHSLDRLLLHQNRV 189
Query: 326 SSEVSDFLDGLSECTNSILLEKLELRFNQFTGILPISLGSLKNLRHLVLWQNSF 379
+ L L L L N + + +L L+ L++L L N +
Sbjct: 190 AHVHPHAFRDLGR------LMTLYLFANNLSALPTEALAPLRALQYLRLNDNPW 237
|
| >1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285 | Back alignment and structure |
|---|
Score = 74.3 bits (183), Expect = 7e-15
Identities = 49/247 (19%), Positives = 81/247 (32%), Gaps = 42/247 (17%)
Query: 313 CNLRTMILSRNNISSEVSDFLDGLSECTNSILLEKLELRFNQFTGILPISLGSLKNLRHL 372
+ + L N IS + L L L N I + L L L
Sbjct: 32 AASQRIFLHGNRISHVPAASFRACRN------LTILWLHSNVLARIDAAAFTGLALLEQL 85
Query: 373 VLWQNSFLGSIPPSI-GNLTLLKELYLASNQMNGQKISDSYQHLKNQTELRTLVLNKARI 431
L N+ L S+ P+ L L L+L + Q++ + L+ L L +
Sbjct: 86 DLSDNAQLRSVDPATFHGLGRLHTLHLDRCGL--QELGPG--LFRGLAALQYLYLQDNAL 141
Query: 432 SDTISDWFWQLSLTLDELDVAYNELRGRVPNSLGFNFPAKVDLSFNNFEGRLLLWSFNVT 491
D F L L L + N + VP +F ++
Sbjct: 142 QALPDDTFRDLG-NLTHLFLHGNRIS-SVPER-----------AFRGLH--------SLD 180
Query: 492 KLYLRDNSFSGLIPNDIGQNLPFLTDLGNLKQLITLVISNNNLSGEIPLLFSNISFLYIL 551
+L L N + + P+ +L +L+TL + NNLS + + L L
Sbjct: 181 RLLLHQNRVAHVHPHA----------FRDLGRLMTLYLFANNLSALPTEALAPLRALQYL 230
Query: 552 DMSNNSL 558
+++N
Sbjct: 231 RLNDNPW 237
|
| >1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285 | Back alignment and structure |
|---|
Score = 55.8 bits (135), Expect = 1e-08
Identities = 43/179 (24%), Positives = 60/179 (33%), Gaps = 15/179 (8%)
Query: 104 EISPSLLQ-LKDLEYLDLSMNNFTGFQVPEFIGSLKELRYLNLSGSFFSGTIPQTLGNLS 162
I + L LE LDLS N P L L L+L P L+
Sbjct: 70 RIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLA 129
Query: 163 NLLYLDLNNFLDQSNQ---IDLEWLSGLSSLVYFNLGGADLSKAGAYWLEVFNKLHSFVE 219
L YL L + N + + L +L + L G +S F LHS
Sbjct: 130 ALQYLYLQD-----NALQALPDDTFRDLGNLTHLFLHGNRISSVPE---RAFRGLHSLDR 181
Query: 220 LHLPNCNLPSLPL-SFPSLNFASLQVLDLSNNDFNSTTPHWLFNITSLLCLDLGSNDLQ 277
L L + + +F L L L L N+ ++ L + +L L L N
Sbjct: 182 LLLHQNRVAHVHPHAFRDLG--RLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWV 238
|
| >1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285 | Back alignment and structure |
|---|
Score = 44.6 bits (106), Expect = 4e-05
Identities = 33/209 (15%), Positives = 71/209 (33%), Gaps = 38/209 (18%)
Query: 376 QNSFLGSIPPSIGNLTLLKELYLASNQMNGQKISDSYQHLKNQTELRTLVLNKARISDTI 435
L ++P I + ++L N+++ + L L L+ ++
Sbjct: 19 PQQGLQAVPVGI--PAASQRIFLHGNRIS----HVPAASFRACRNLTILWLHSNVLARID 72
Query: 436 SDWFWQLSLTLDELDVAYNELRGRVPNSLGFNFPAKVDLSFNNFEGRLLLWSFNVTKLYL 495
+ F L+ L++LD++ N V + +F+ + L+L
Sbjct: 73 AAAFTGLA-LLEQLDLSDNAQLRSVDPA-----------TFHGLG--------RLHTLHL 112
Query: 496 RDNSFSGLIPNDIGQNLPFLTDLGNLKQLITLVISNNNLSGEIP-LLFSNISFLYILDMS 554
+ + L L L + +N L +P F ++ L L +
Sbjct: 113 DRCGLQ-ELGPGL---------FRGLAALQYLYLQDNALQ-ALPDDTFRDLGNLTHLFLH 161
Query: 555 NNSLSGSTPESIGSLRTVKFLVLRNNYLS 583
N +S + L ++ L+L N ++
Sbjct: 162 GNRISSVPERAFRGLHSLDRLLLHQNRVA 190
|
| >3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452 | Back alignment and structure |
|---|
Score = 88.7 bits (220), Expect = 6e-19
Identities = 64/346 (18%), Positives = 108/346 (31%), Gaps = 99/346 (28%)
Query: 215 HSFVELHLPNCNLPSLPLSFPSLNFASLQVLDLSNNDFNSTTPHWLFNITSLLCLDLGSN 274
+ F ++ L +P P ++ + L+L N+ ++ L L LG N
Sbjct: 54 NQFSKVVCTRRGLSEVPQGIP----SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRN 109
Query: 275 DLQGDIPDG-FASLNSLQELDLSGNSFLGGQLSRNLGKLCNLRTMILSRNNISSEVSDFL 333
++ I G F L SL L+L N ++ S
Sbjct: 110 SIR-QIEVGAFNGLASLNTLELF-------------------------DNWLTVIPSGAF 143
Query: 334 DGLSECTNSILLEKLELRFNQFTGILPISLGSLKNLRHLVLWQNSFLGSIPPSI-GNLTL 392
+ LS+ L +L LR N I + + +L L L + L I L
Sbjct: 144 EYLSK------LRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFN 197
Query: 393 LKELYLASNQMNGQKISDSYQHLKNQTELRTLVLNKARISDTISDWFWQLSLTLDELDVA 452
LK L L + +L L L ++ + F LS +L +L V
Sbjct: 198 LKYLNLGMCNIK------DMPNLTPLVGLEELEMSGNHFPEIRPGSFHGLS-SLKKLWVM 250
Query: 453 YNELRGRVPNSLGFNFPAKVDLSFNNFEGRLLLWSFNVTKLYLRDNSFSGLIPNDIGQNL 512
+++ + N+F GL
Sbjct: 251 NSQVS------------------------------------LIERNAFDGL--------- 265
Query: 513 PFLTDLGNLKQLITLVISNNNLSGEIPLLFSNISFLYILDMSNNSL 558
L+ L +++NNLS LF+ + +L L + +N
Sbjct: 266 ---------ASLVELNLAHNNLSSLPHDLFTPLRYLVELHLHHNPW 302
|
| >3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452 | Back alignment and structure |
|---|
Score = 86.0 bits (213), Expect = 4e-18
Identities = 53/230 (23%), Positives = 79/230 (34%), Gaps = 36/230 (15%)
Query: 114 DLEYLDLSMNNFTGFQVPEFIGSLKELRYLNLSGSFFSGTIPQTLGNLSNLLYLDLNNFL 173
+ YL+L NN Q F L L L L + L++L L+L +
Sbjct: 76 NTRYLNLMENNIQMIQADTFRH-LHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFD-- 132
Query: 174 DQSNQ---IDLEWLSGLSSLVYFNLGGADLSKAGAYWLE--------------------- 209
N I LS L L + +Y
Sbjct: 133 ---NWLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISE 189
Query: 210 -VFNKLHSFVELHLPNCNLPSLPLSFPSLNFASLQVLDLSNNDFNSTTPHWLFNITSLLC 268
F L + L+L CN+ +P + L L+ L++S N F P ++SL
Sbjct: 190 GAFEGLFNLKYLNLGMCNIKDMP-NLTPL--VGLEELEMSGNHFPEIRPGSFHGLSSLKK 246
Query: 269 LDLGSNDLQGDIPDGFASLNSLQELDLSGN--SFLGGQLSRNLGKLCNLR 316
L + ++ + + F L SL EL+L+ N S L L L L L
Sbjct: 247 LWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYLVELH 296
|
| >3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452 | Back alignment and structure |
|---|
Score = 81.3 bits (201), Expect = 1e-16
Identities = 49/190 (25%), Positives = 74/190 (38%), Gaps = 10/190 (5%)
Query: 112 LKDLEYLDLSMNNFTGFQVPEFIGSLKELRYLNLSGSFFSGTIPQTLGNLSNLLYLDLNN 171
L L L+L N T F L +LR L L + + +L+ LDL
Sbjct: 122 LASLNTLELFDNWLTVIPSGAFEY-LSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGE 180
Query: 172 FLDQSNQIDLEWLSGLSSLVYFNLGGADLSKAGAYWLEVFNKLHSFVELHLPNCNLPSLP 231
+ I GL +L Y NLG ++ + L EL + + P +
Sbjct: 181 L-KKLEYISEGAFEGLFNLKYLNLGMCNIKD-----MPNLTPLVGLEELEMSGNHFPEIR 234
Query: 232 L-SFPSLNFASLQVLDLSNNDFNSTTPHWLFNITSLLCLDLGSNDLQGDIPDGFASLNSL 290
SF L +SL+ L + N+ + + + SL+ L+L N+L D F L L
Sbjct: 235 PGSFHGL--SSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYL 292
Query: 291 QELDLSGNSF 300
EL L N +
Sbjct: 293 VELHLHHNPW 302
|
| >3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452 | Back alignment and structure |
|---|
Score = 79.0 bits (195), Expect = 8e-16
Identities = 50/244 (20%), Positives = 86/244 (35%), Gaps = 28/244 (11%)
Query: 345 LEKLELRFNQFTGILPISLGSLKNLRHLVLWQNSFLGSIPPSI-GNLTLLKELYLASNQM 403
L L N I + L +L L L +NS + I L L L L N +
Sbjct: 77 TRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNS-IRQIEVGAFNGLASLNTLELFDNWL 135
Query: 404 NGQKISDSYQHLKNQTELRTLVLNKARISDTISDWFWQLSLTLDELDVA-YNELRGRVPN 462
I + ++LR L L I S F ++ +L LD+ +L +
Sbjct: 136 --TVIPS--GAFEYLSKLRELWLRNNPIESIPSYAFNRVP-SLMRLDLGELKKLE-YISE 189
Query: 463 SLGFNFPA--KVDLSFNNFEGRLLLWSF----NVTKLYLRDNSFSGLIPNDIGQNLPFLT 516
++L N + + + + +L + N F + P
Sbjct: 190 GAFEGLFNLKYLNLGMCNIKD---MPNLTPLVGLEELEMSGNHFPEIRPGS--------- 237
Query: 517 DLGNLKQLITLVISNNNLSGEIPLLFSNISFLYILDMSNNSLSGSTPESIGSLRTVKFLV 576
L L L + N+ +S F ++ L L++++N+LS + LR + L
Sbjct: 238 -FHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYLVELH 296
Query: 577 LRNN 580
L +N
Sbjct: 297 LHHN 300
|
| >3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452 | Back alignment and structure |
|---|
Score = 46.3 bits (110), Expect = 2e-05
Identities = 19/95 (20%), Positives = 38/95 (40%), Gaps = 10/95 (10%)
Query: 489 NVTKLYLRDNSFSGLIPNDIGQNLPFLTDLGNLKQLITLVISNNNLSGEIPLLFSNISFL 548
N L L +N+ + + +L L L + N++ F+ ++ L
Sbjct: 76 NTRYLNLMENNIQMIQADT----------FRHLHHLEVLQLGRNSIRQIEVGAFNGLASL 125
Query: 549 YILDMSNNSLSGSTPESIGSLRTVKFLVLRNNYLS 583
L++ +N L+ + L ++ L LRNN +
Sbjct: 126 NTLELFDNWLTVIPSGAFEYLSKLRELWLRNNPIE 160
|
| >1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290 | Back alignment and structure |
|---|
Score = 81.3 bits (201), Expect = 3e-17
Identities = 52/194 (26%), Positives = 77/194 (39%), Gaps = 16/194 (8%)
Query: 211 FNKLHSFVELHLPNCNLPSLPLSFPSLNFASLQVLDLSNNDFNSTTPHWLFNITSLLCLD 270
+K+ S +E++ NL +LP P +L LS N + + L T L L+
Sbjct: 6 VSKVASHLEVNCDKRNLTALPPDLP----KDTTILHLSENLLYTFSLATLMPYTRLTQLN 61
Query: 271 LGSNDLQGDIPDGFASLNSLQELDLSGNSFLGGQLSRNLGKLCNLRTMILSRNNISSEVS 330
L +L +L L LDLS N L L L + +S N ++S
Sbjct: 62 LDRAELT--KLQVDGTLPVLGTLDLSHNQL--QSLPLLGQTLPALTVLDVSFNRLTSLPL 117
Query: 331 DFLDGLSECTNSILLEKLELRFNQFTGILPISLGSLKNLRHLVLWQNSFLGSIPPSI-GN 389
L GL E L++L L+ N+ + P L L L L N+ L +P +
Sbjct: 118 GALRGLGE------LQELYLKGNELKTLPPGLLTPTPKLEKLSLANNN-LTELPAGLLNG 170
Query: 390 LTLLKELYLASNQM 403
L L L L N +
Sbjct: 171 LENLDTLLLQENSL 184
|
| >1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290 | Back alignment and structure |
|---|
Score = 72.8 bits (179), Expect = 3e-14
Identities = 51/185 (27%), Positives = 71/185 (38%), Gaps = 16/185 (8%)
Query: 219 ELHLPNCNLPSLPLS-FPSLNFASLQVLDLSNNDFNSTTPHWLFNITSLLCLDLGSNDLQ 277
LHL L + L+ L L+L + T + L LDL N LQ
Sbjct: 35 ILHLSENLLYTFSLATLMPY--TRLTQLNLDRAEL--TKLQVDGTLPVLGTLDLSHNQLQ 90
Query: 278 GDIPDGFASLNSLQELDLSGNSFLGGQLSRNL-GKLCNLRTMILSRNNISSEVSDFLDGL 336
+P +L +L LD+S N L L L+ + L N + + L
Sbjct: 91 -SLPLLGQTLPALTVLDVSFNRL--TSLPLGALRGLGELQELYLKGNELKTLPPGLLTPT 147
Query: 337 SECTNSILLEKLELRFNQFTGILPISLGSLKNLRHLVLWQNSFLGSIPPSIGNLTLLKEL 396
+ LEKL L N T + L L+NL L+L +NS L +IP LL
Sbjct: 148 PK------LEKLSLANNNLTELPAGLLNGLENLDTLLLQENS-LYTIPKGFFGSHLLPFA 200
Query: 397 YLASN 401
+L N
Sbjct: 201 FLHGN 205
|
| >1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290 | Back alignment and structure |
|---|
Score = 70.9 bits (174), Expect = 1e-13
Identities = 46/215 (21%), Positives = 79/215 (36%), Gaps = 25/215 (11%)
Query: 235 PSLNFASLQVLDLSNNDFNSTTPHWLFNI-TSLLCLDLGSNDLQGDIPDGFASLNSLQEL 293
AS ++ + + P ++ L L N L L +L
Sbjct: 5 EVSKVASHLEVNCDKRNLTALPP----DLPKDTTILHLSENLLYTFSLATLMPYTRLTQL 60
Query: 294 DLSGNSFLGGQLSR--NLGKLCNLRTMILSRNNISSEVSDFLDGLSECTNSILLEKLELR 351
+L +L++ G L L T+ LS N + S + L L L++
Sbjct: 61 NLDRA-----ELTKLQVDGTLPVLGTLDLSHNQLQS-LPLLGQTLPA------LTVLDVS 108
Query: 352 FNQFTGILPISLGSLKNLRHLVLWQNSFLGSIPPSI-GNLTLLKELYLASNQMNGQKISD 410
FN+ T + +L L L+ L L N L ++PP + L++L LA+N + ++
Sbjct: 109 FNRLTSLPLGALRGLGELQELYLKGNE-LKTLPPGLLTPTPKLEKLSLANNNL--TELPA 165
Query: 411 SYQHLKNQTELRTLVLNKARISDTISDWFWQLSLT 445
L L TL+L + + +F L
Sbjct: 166 GL--LNGLENLDTLLLQENSLYTIPKGFFGSHLLP 198
|
| >1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290 | Back alignment and structure |
|---|
Score = 67.1 bits (164), Expect = 2e-12
Identities = 53/191 (27%), Positives = 76/191 (39%), Gaps = 23/191 (12%)
Query: 165 LYLDLNNFLDQSNQIDLEWLSGLSSLVYFNLGGADLSKAGAYWLEVFNKLHSFVELHLPN 224
L+L N L L + L NL A+L+K L+V L L L +
Sbjct: 36 LHLSENLL----YTFSLATLMPYTRLTQLNLDRAELTK-----LQVDGTLPVLGTLDLSH 86
Query: 225 CNLPSLPLSFPSLNFASLQVLDLSNNDFNSTTPHWLFNITSLLCLDLGSNDLQGDIPDG- 283
L SLPL +L +L VLD+S N S L + L L L N+L+ +P G
Sbjct: 87 NQLQSLPLLGQTLP--ALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELK-TLPPGL 143
Query: 284 FASLNSLQELDLSGNSFLGGQLSRNL-GKLCNLRTMILSRNNISSEVSDFLDGLSECTNS 342
L++L L+ N+ +L L L NL T++L N++ + F
Sbjct: 144 LTPTPKLEKLSLANNNL--TELPAGLLNGLENLDTLLLQENSLYTIPKGFFGSHL----- 196
Query: 343 ILLEKLELRFN 353
L L N
Sbjct: 197 --LPFAFLHGN 205
|
| >1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290 | Back alignment and structure |
|---|
Score = 59.7 bits (145), Expect = 5e-10
Identities = 43/189 (22%), Positives = 64/189 (33%), Gaps = 37/189 (19%)
Query: 111 QLKDLEYLDLSMNNFTGFQVPEFIGSLKELRYLNLSGSFFSGTIPQTLGNLSNLLYLDLN 170
L L+L T ++ G+L L L+LS + ++P L L LD++
Sbjct: 53 PYTRLTQLNLDRAELT--KLQVD-GTLPVLGTLDLSHNQLQ-SLPLLGQTLPALTVLDVS 108
Query: 171 NFLDQSNQIDLEWLSGLSSLVYFNLGGADLSKAGAYWLEVFNKLHSFVELHLPNCNLPSL 230
N++ + L L EL+L L +L
Sbjct: 109 F-----NRL-----TSLPL-------------------GALRGLGELQELYLKGNELKTL 139
Query: 231 PLS-FPSLNFASLQVLDLSNNDFNSTTPHWLFNITSLLCLDLGSNDLQGDIPDGFASLNS 289
P L+ L L+NN+ L + +L L L N L IP GF +
Sbjct: 140 PPGLLTPT--PKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLYT-IPKGFFGSHL 196
Query: 290 LQELDLSGN 298
L L GN
Sbjct: 197 LPFAFLHGN 205
|
| >1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290 | Back alignment and structure |
|---|
Score = 51.6 bits (124), Expect = 3e-07
Identities = 46/212 (21%), Positives = 70/212 (33%), Gaps = 39/212 (18%)
Query: 345 LEKLELRFNQFTGILPISLGSLKNLRHLVLWQNSFLGSIPPSIGNLTLLKELYLASNQMN 404
L L N +L L L L + L + G L +L L L+ NQ+
Sbjct: 33 TTILHLSENLLYTFSLATLMPYTRLTQLNLDRAE-LTKLQVD-GTLPVLGTLDLSHNQL- 89
Query: 405 GQKISDSYQHLKNQTELRTLVLNKARISDTISDWFWQLSLTLDELDVAYNELRGRVPNSL 464
Q + Q L L L ++ R++ L L EL + NEL+
Sbjct: 90 -QSLPLLGQTL---PALTVLDVSFNRLTSLPLGALRGLG-ELQELYLKGNELK------- 137
Query: 465 GFNFPAKVDLSFNNFEGRLLLWSFNVTKLYLRDNSFSGLIPNDIGQNLPFLTDLGNLKQL 524
P + L KL L +N+ + L P + L L+ L
Sbjct: 138 --TLPPGL------LTPTPKL-----EKLSLANNNLTEL-PAGL---------LNGLENL 174
Query: 525 ITLVISNNNLSGEIPLLFSNISFLYILDMSNN 556
TL++ N+L F + L + N
Sbjct: 175 DTLLLQENSLYTIPKGFFGSHL-LPFAFLHGN 205
|
| >1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290 | Back alignment and structure |
|---|
Score = 41.2 bits (97), Expect = 5e-04
Identities = 29/108 (26%), Positives = 44/108 (40%), Gaps = 15/108 (13%)
Query: 489 NVTKLYLRDNSFSGLIPNDIGQNLPFLTDL-------------GNLKQLITLVISNNNLS 535
+ T L+L +N LT L G L L TL +S+N L
Sbjct: 32 DTTILHLSENLLYTF-SLATLMPYTRLTQLNLDRAELTKLQVDGTLPVLGTLDLSHNQLQ 90
Query: 536 GEIPLLFSNISFLYILDMSNNSLSGSTPESIGSLRTVKFLVLRNNYLS 583
+PLL + L +LD+S N L+ ++ L ++ L L+ N L
Sbjct: 91 -SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELK 137
|
| >1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312 | Back alignment and structure |
|---|
Score = 81.5 bits (201), Expect = 4e-17
Identities = 58/283 (20%), Positives = 94/283 (33%), Gaps = 25/283 (8%)
Query: 112 LKDLEYLDLSMNNFTG-FQVPEFIGSLKELRYLNLSGSFFSGTIPQT---LGNLSNLLYL 167
+ LEYL ++ Q + I SL L+ L + + I + +S L L
Sbjct: 42 GRSLEYLLKRVDTEADLGQFTDIIKSLS-LKRLTVRAARIPSRILFGALRVLGISGLQEL 100
Query: 168 DLNNFLDQSNQIDLEWLSGLSSLVYFNLGGADLSKAGAYWLEVFNKLH-SFVELHLPNCN 226
L N + L NL + A+ E+ L L + +
Sbjct: 101 TLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAH 160
Query: 227 LPSLPLSFPSLNFASLQVLDLSNNDF-------NSTTPHWLFNITSLLCLDLGSNDLQGD 279
+ F +L LDLS+N ++ P + L + G G
Sbjct: 161 SLNFSCEQVR-VFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGV 219
Query: 280 IPDGFASLNSLQELDLSGNSFLGGQLSRNLGKLCNLRTMILSRNNISSEVSDFLDGLSEC 339
A+ LQ LDLS NS + + L ++ LS + + +
Sbjct: 220 CSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLKQ--------VPKG 271
Query: 340 TNSILLEKLELRFNQFTGILPISLGSLKNLRHLVLWQNSFLGS 382
+ L L+L +N+ S L + +L L N FL S
Sbjct: 272 LPA-KLSVLDLSYNRLDRNP--SPDELPQVGNLSLKGNPFLDS 311
|
| >1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312 | Back alignment and structure |
|---|
Score = 54.1 bits (130), Expect = 4e-08
Identities = 51/284 (17%), Positives = 89/284 (31%), Gaps = 35/284 (12%)
Query: 317 TMILSRNNISSEVSDFLDGLSECTNSILLEKLELRFNQFTGILP---ISLGSLKNLRHLV 373
+L R + +++ F D + S+ L++L +R + + + + + L+ L
Sbjct: 46 EYLLKRVDTEADLGQFTDII----KSLSLKRLTVRAARIPSRILFGALRVLGISGLQELT 101
Query: 374 LWQNSFLGSIPPSIGNLTL--LKELYLASNQMNGQKISDSYQHLKNQTELRTLVLNKARI 431
L G+ PP + T L L L + + + + L+ L + +A
Sbjct: 102 LENLEVTGTAPPPLLEATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAHS 161
Query: 432 SDTISDWFWQLSLTLDELDVAYNELRGRVPNSLGFNFPA-----KVDLSFNNFE------ 480
+ + L LD++ N G + L E
Sbjct: 162 LNFSCEQVRVFP-ALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVC 220
Query: 481 GRLLLWSFNVTKLYLRDNSFSGLIPNDIGQNLPFLTDLGNLKQLITLVISNNNLSGEIPL 540
L + L L NS QL +L +S L
Sbjct: 221 SALAAARVQLQGLDLSHNSLRDAAGAPSCDWPS---------QLNSLNLSFTGLKQVPKG 271
Query: 541 LFSNISFLYILDMSNNSLSGSTPESIGSLRTVKFLVLRNNYLSG 584
L + L +LD+S N L + S L V L L+ N
Sbjct: 272 LPAK---LSVLDLSYNRLDRN--PSPDELPQVGNLSLKGNPFLD 310
|
| >2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520 | Back alignment and structure |
|---|
Score = 82.6 bits (204), Expect = 8e-17
Identities = 58/358 (16%), Positives = 125/358 (34%), Gaps = 26/358 (7%)
Query: 112 LKDLEYLDLSMNNFTGFQVPEFIGSLKELRYLNLSGSFFSGTIPQTLGNLSNL-LYLDLN 170
+L++LDLS N F + + G++ +L++L LS + + + +L+ + L L
Sbjct: 89 TVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEKSSVLPIAHLNISKVLLVLG 148
Query: 171 NFLDQSNQIDLEWLSGLSSLVYFNLGGADLSKAGAYWLEVFNKLHSFVELHLPNCNLPSL 230
+ + SL + ++ L + N S
Sbjct: 149 ETYGEKEDPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSY 208
Query: 231 PLSFPSLNFASLQVLDLSNNDFNSTTPHW-----LFNITSLLCLDLGSNDLQGDIPDGFA 285
LS + + ++ +L+ N+ +T + L T++ + + LQG +
Sbjct: 209 FLSILAKLQTNPKLSNLTLNNIETTWNSFIRILQLVWHTTVWYFSISNVKLQGQLDFRDF 268
Query: 286 SL--NSLQELDLSGNSFLGGQLSRNLG--KLCNLRTMILSRNNISSEVSDFLDGLSECTN 341
SL+ L + ++ N+ + + +S
Sbjct: 269 DYSGTSLKALSIHQVVSDVFGFPQSYIYEIFSNMNIKNFTVSGTRMVHMLCPSKISP--- 325
Query: 342 SILLEKLELRFNQFTGILPISLGSLKNLRHLVLWQNSFLGSIPPSIG---NLTLLKELYL 398
L+ N T + + G L L L+L N L + + L++L +
Sbjct: 326 ---FLHLDFSNNLLTDTVFENCGHLTELETLILQMNQ-LKELSKIAEMTTQMKSLQQLDI 381
Query: 399 ASNQMNGQKISDSYQHLKNQTELRTLVLNKARISDTISDWFWQLSLTLDELDVAYNEL 456
+ N ++ + K+ L +L ++ ++DTI L + LD+ N++
Sbjct: 382 SQNSVSYDEKKGDCSWTKS---LLSLNMSSNILTDTIFR---CLPPRIKVLDLHSNKI 433
|
| >2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520 | Back alignment and structure |
|---|
Score = 82.6 bits (204), Expect = 9e-17
Identities = 61/362 (16%), Positives = 123/362 (33%), Gaps = 25/362 (6%)
Query: 233 SFPSLNFASLQVLDLSNNDFNSTTPHWLFNITSLLCLDLGSNDLQGDIPDGFASLNSLQE 292
P +L++S N + + +++ L L + N +Q F L+
Sbjct: 14 HVPKDLSQKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEY 73
Query: 293 LDLSGNSFLGGQLSR-NLGKLCNLRTMILSRNNISS-EVSDFLDGLSECTNSILLEKLEL 350
LDLS N +L + + NL+ + LS N + + +S+ L+ L L
Sbjct: 74 LDLSHN-----KLVKISCHPTVNLKHLDLSFNAFDALPICKEFGNMSQ------LKFLGL 122
Query: 351 RFNQFTGILPISLGSLKNLRHLVLWQNSFLGSIPP-SIGNLTLLKELYLASNQMNGQKIS 409
+ + L + L++ ++ P + + + I
Sbjct: 123 STTHLEKSSVLPIAHLNISKVLLVLGETYGEKEDPEGLQDFNTESLHIVFPTNKEFHFIL 182
Query: 410 DSYQHLKNQTELRTLVLNKARISDTISDWF--------WQLSLTLDELDVAYNELRGRVP 461
D EL + + +LTL+ ++ +N R+
Sbjct: 183 DVSVKTVANLELSNIKCVLEDNKCSYFLSILAKLQTNPKLSNLTLNNIETTWNSFI-RIL 241
Query: 462 NSLGFNFPAKVDLSFNNFEGRLLLWSFNVTKLYLRDNSFSGLIPNDIGQNLPFLTDLGNL 521
+ +S +G+L F+ + L+ S ++ + G ++ +
Sbjct: 242 QLVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVFGFPQSYIYE--IF 299
Query: 522 KQLITLVISNNNLSGEIPLLFSNISFLYILDMSNNSLSGSTPESIGSLRTVKFLVLRNNY 581
+ + + L S IS LD SNN L+ + E+ G L ++ L+L+ N
Sbjct: 300 SNMNIKNFTVSGTRMVHMLCPSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQ 359
Query: 582 LS 583
L
Sbjct: 360 LK 361
|
| >2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520 | Back alignment and structure |
|---|
Score = 81.8 bits (202), Expect = 2e-16
Identities = 70/464 (15%), Positives = 145/464 (31%), Gaps = 66/464 (14%)
Query: 111 QLKDLEYLDLSMNNFTGFQVPEFIGSLKELRYLNLSG-SFFSGTIPQTLGNLSNLLYLDL 169
++LEYLDLS N L++L+LS +F + I + GN+S L +L L
Sbjct: 67 FNQELEYLDLSHNKLVKI----SCHPTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGL 122
Query: 170 NNFLDQSNQIDLEWLSGLSSLVYFNLGGADLSKAGAYWLEVFNKLHSFVELHL--PNCNL 227
+ ++ + ++ L + G + + LH+ P
Sbjct: 123 ST-----THLEKSSVLPIAHLNISKVLLVLGETYGEKEDPEGLQDFNTESLHIVFPTNKE 177
Query: 228 PSLPLSFPSLNFASLQVLDLSNN------DFNSTTPHWLFNITSLLCLDLGSNDLQGDIP 281
L A+L++ ++ + + L L L L + + +
Sbjct: 178 FHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILAKLQTNPKLSNLTLNNIETTWNSF 237
Query: 282 DG---FASLNSLQELDLSGNSFLGGQLSRNLG----KLCNLRTMILSRNNISSEVSDFLD 334
++ +S G R+ L L + + S +
Sbjct: 238 IRILQLVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVFGFPQSYIYE 297
Query: 335 GLSECTNSILLEKLELRFNQFTGILPISLGSLKNLRHLVLWQNSFLGSIPPSIGNLTLLK 394
S + + + + + HL N ++ + G+LT L+
Sbjct: 298 IFSN------MNIKNFTVSGTRMVHMLCPSKISPFLHLDFSNNLLTDTVFENCGHLTELE 351
Query: 395 ELYLASNQMNGQKISDSYQHLKNQTELRTLVLNKARISDTISDWFWQLSLTLDELDVAYN 454
L L NQ+ +++S + L+ L +++ +S + +L L+++ N
Sbjct: 352 TLILQMNQL--KELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSN 409
Query: 455 ELRGRVPNSLGFNFPAKVDLSFNNFEGRLLLWSFNVTKLYLRDNSFSGLIPNDIGQNLPF 514
L + L + L L N +
Sbjct: 410 ILTDTIFRCL----------------------PPRIKVLDLHSNKIKSIPKQ-------- 439
Query: 515 LTDLGNLKQLITLVISNNNLSGEIPLLFSNISFLYILDMSNNSL 558
+ L+ L L +++N L +F ++ L + + N
Sbjct: 440 ---VVKLEALQELNVASNQLKSVPDGIFDRLTSLQKIWLHTNPW 480
|
| >2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520 | Back alignment and structure |
|---|
Score = 81.1 bits (200), Expect = 3e-16
Identities = 73/497 (14%), Positives = 151/497 (30%), Gaps = 68/497 (13%)
Query: 113 KDLEYLDLSMNNFTGFQVPEFIGSLKELRYLNLSGSFFSGTIPQTLGNLSNLLYLDLNN- 171
+ L++S N + + SL +LR L +S + L YLDL++
Sbjct: 21 QKTTILNISQNYISELWTSDI-LSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHN 79
Query: 172 --------------FLD-QSNQID----LEWLSGLSSLVYFNLGGADLSKAGAYWLEVFN 212
LD N D + +S L + L L K+ + N
Sbjct: 80 KLVKISCHPTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEKSSVLPIAHLN 139
Query: 213 KLHSFVELHLPNCNLPSLPLSFPSLNFASLQVLDLSNNDFNSTTPHWLFNITSLLCLDLG 272
+ L P N SL ++ +N +F+ + + +L ++
Sbjct: 140 ISKVLLVL-GETYGEKEDPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNIK 198
Query: 273 SNDLQGDIPDGFASLNSL------QELDLSGNSFLGGQLSRNLGKLCNLRTMILSRNNIS 326
+ L L L L+ R L + + S +N+
Sbjct: 199 CVLEDNKCSYFLSILAKLQTNPKLSNLTLNNIETTWNSFIRILQLVWHTTVWYFSISNVK 258
Query: 327 SEVSDFLDGLSECTNSI-LLEKLELRFNQFTGILPISLGSLKNLRHLVLWQNSFLGSIPP 385
+ S+ L ++ + F N+ +
Sbjct: 259 LQGQLDFRDFDYSGTSLKALSIHQVVSDVFGFPQSYIYEIFSNMNIKNFTVSGTRMVHML 318
Query: 386 SIGNLTLLKELYLASNQMNGQKISDSYQHLKNQTELRTLVLNKARIS--DTISDWFWQLS 443
++ L ++N + +++ + TEL TL+L ++ I++ Q+
Sbjct: 319 CPSKISPFLHLDFSNNLL----TDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMK 374
Query: 444 LTLDELDVAYNELRGRVPNSLGFNFPAKVDLSFNNFEGRLLLWSFNVTKLYLRDNSFSGL 503
+L +LD++ N + W+ ++ L + N +
Sbjct: 375 -SLQQLDISQNSVSYDEKKGD-------------------CSWTKSLLSLNMSSNILTDT 414
Query: 504 IPNDIGQNLPFLTDLGNLKQLITLVISNNNLSGEIPLLFSNISFLYILDMSNNSLSGSTP 563
I + + L + +N + IP + L L++++N L
Sbjct: 415 IFRCLPPRIKVLD------------LHSNKIK-SIPKQVVKLEALQELNVASNQLKSVPD 461
Query: 564 ESIGSLRTVKFLVLRNN 580
L +++ + L N
Sbjct: 462 GIFDRLTSLQKIWLHTN 478
|
| >2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520 | Back alignment and structure |
|---|
Score = 78.0 bits (192), Expect = 2e-15
Identities = 55/309 (17%), Positives = 116/309 (37%), Gaps = 24/309 (7%)
Query: 106 SPSLLQLKDLEYLDLSMNNFTGFQVPEFIGSLKELRYLNLSGSFFSGTIPQTLGNLSNLL 165
+ L + + F F + + ++ L N+ L L+ L
Sbjct: 159 GLQDFNTESLHIVFPTNKEFH-FILDVSVKTVANLELSNIKCVLEDNKCSYFLSILAKLQ 217
Query: 166 YLDLNNFLDQSNQ-------IDLEWLSGLSSLVYFNLGGADLSKAGAYWLEVF----NKL 214
+ L +N I + L +++ YF++ ++ G F L
Sbjct: 218 TNPKLSNLTLNNIETTWNSFIRILQLVWHTTVWYFSIS--NVKLQGQLDFRDFDYSGTSL 275
Query: 215 HSFVELHLPNCNLPSLPLSFPSLNFASLQVLDLSNNDFNSTTPHWLFNITSLLCLDLGSN 274
+ + + ++ P S+ F+++ + + + + I+ L LD +N
Sbjct: 276 KALSIHQVVS-DVFGFPQSYIYEIFSNMNIKNFTVSGTRMVHMLCPSKISPFLHLDFSNN 334
Query: 275 DLQGDIPDGFASLNSLQELDLSGNSFLG-GQLSRNLGKLCNLRTMILSRNNISSEVSDFL 333
L + + L L+ L L N +++ ++ +L+ + +S+N++S +
Sbjct: 335 LLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKK-- 392
Query: 334 DGLSECTNSILLEKLELRFNQFTGILPISLGSLKNLRHLVLWQNSFLGSIPPSIGNLTLL 393
+C+ + L L + N T + L ++ L L N + SIP + L L
Sbjct: 393 ---GDCSWTKSLLSLNMSSNILTDTIFRCL--PPRIKVLDLHSNK-IKSIPKQVVKLEAL 446
Query: 394 KELYLASNQ 402
+EL +ASNQ
Sbjct: 447 QELNVASNQ 455
|
| >2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520 | Back alignment and structure |
|---|
Score = 52.2 bits (125), Expect = 3e-07
Identities = 37/171 (21%), Positives = 68/171 (39%), Gaps = 15/171 (8%)
Query: 111 QLKDLEYLDLSMNNFTGFQVPEFIGSLKELRYLNLSGSFFSGTIPQTLG---NLSNLLYL 167
++ +LD S N T V E G L EL L L + + + + +L L
Sbjct: 322 KISPFLHLDFSNNLLTDT-VFENCGHLTELETLILQMNQLK-ELSKIAEMTTQMKSLQQL 379
Query: 168 DLNNFLDQSNQIDLEWLSGLSSLVYFNLGGADLSKAGAYWLEVFNKLHSFVE-LHLPNCN 226
D++ ++ + S SL+ N+ L+ +F L ++ L L +
Sbjct: 380 DISQNSVSYDEKKGDC-SWTKSLLSLNMSSNILTDT------IFRCLPPRIKVLDLHSNK 432
Query: 227 LPSLPLSFPSLNFASLQVLDLSNNDFNSTTPHWLFNITSLLCLDLGSNDLQ 277
+ S+P + +LQ L++++N S +TSL + L +N
Sbjct: 433 IKSIPKQV--VKLEALQELNVASNQLKSVPDGIFDRLTSLQKIWLHTNPWD 481
|
| >2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520 | Back alignment and structure |
|---|
Score = 44.9 bits (106), Expect = 6e-05
Identities = 41/284 (14%), Positives = 87/284 (30%), Gaps = 44/284 (15%)
Query: 314 NLRTMILSRNNISSEVSDFLDGLSECTNSILLEKLELRFNQFTGILPISLGSLKNLRHLV 373
+ +S+N IS + + LS+ L L + N+ + + L +L
Sbjct: 22 KTTILNISQNYISELWTSDILSLSK------LRILIISHNRIQYLDISVFKFNQELEYLD 75
Query: 374 LWQNSFLGSIPPSIGNLTLLKELYLASNQMNGQKISDSYQHLKNQTELRTLVLNKARISD 433
L N L I LK L L+ N + I + ++ L+ L L+ +
Sbjct: 76 LSHNK-LVKIS--CHPTVNLKHLDLSFNAFDALPICKEFGNMSQ---LKFLGLSTTHLEK 129
Query: 434 TISDWFWQLSLTLDELDVAYNELRGRVPNSLGFNFPAKVDLSFNNFEGRLLLWSFNVTKL 493
+ L+++ L + P L + + F N
Sbjct: 130 SSVLPIAHLNISKVLLVLGETYGEKEDPEGLQDFNTESLHIVFPT----------NKEFH 179
Query: 494 YLRDNSFSGLIPNDIGQNLPFLTDLGNLKQLITLVISNNNLSGEIPLLFSNISFLYILDM 553
++ D S + + L+++ + + + L+ + L ++
Sbjct: 180 FILDVSVKTVANLE-------LSNIKCVLEDNKCSYFLSILAKLQTNPKLSNLTLNNIET 232
Query: 554 SNNSLSGSTPESIGSLRTVKFLVLRNNYLSGKLPLSLKNCTFQE 597
+ NS +L+ + + S+ N Q
Sbjct: 233 TWNSF---------------IRILQLVWHTTVWYFSISNVKLQG 261
|
| >3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562 | Back alignment and structure |
|---|
Score = 80.7 bits (199), Expect = 4e-16
Identities = 75/424 (17%), Positives = 140/424 (33%), Gaps = 35/424 (8%)
Query: 111 QLKDLEYLDLSMNNFTGFQVPEFIGSLKELRYLNLSG-SFFSGTIPQTLGNLSNLLYLDL 169
+DLEYLD+S N + LR+L+LS F + + GNL+ L +L L
Sbjct: 98 FNQDLEYLDVSHNRLQNIS----CCPMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGL 153
Query: 170 NNFLDQSNQIDLEWLSGLSSLVYFNLGGADLSKAGAYWLEVFNKLHSFVELHLPNCNLPS 229
+ + Q+DL ++ L L L G + + + L +L S
Sbjct: 154 SA--AKFRQLDLLPVAHL-HLSCILLDLVSYHIKGGETESLQIPNTTVLHLVFHPNSLFS 210
Query: 230 LPLSFPSLNFASLQVLDLSNNDFNSTTPHWLFNITSLLCLDLGSNDLQGDIPDG------ 283
+ ++ LQ+ ++ ND N + + L +
Sbjct: 211 VQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWKCSVKLF 270
Query: 284 -FASLNSLQELDLSGNSFLG----GQLSRNLGKLCNLRTMILSRNNISSEVSDFLDGLSE 338
F ++ L++ + + + + L +L + +E
Sbjct: 271 QFFWPRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAE 330
Query: 339 CTNSILLEKLELRFNQFTGILPISLGSLKNLRHLVLWQNSFLGSIPPSIGNLTLLKELYL 398
+ L + I + S + L QN F S+ L L+ L L
Sbjct: 331 ------MNIKMLSISDTPFIHMVCPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLIL 384
Query: 399 ASNQMNGQKISDSYQHLKNQTELRTLVLNKARISDTISDWFWQLSLTLDELDVAYNELRG 458
N + + KN + L TL ++ ++ D + ++ L+++ N L G
Sbjct: 385 QRNGL--KNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTG 442
Query: 459 RVPNSLGFNFPAKVDLSFNNFE----GRLLLWSFNVTKLYLRDNSFSGLIPNDIGQNLPF 514
V L +DL N L + +L + N +P+ + L
Sbjct: 443 SVFRCLPPKV-KVLDLHNNRIMSIPKDVTHL--QALQELNVASNQLKS-VPDGVFDRLTS 498
Query: 515 LTDL 518
L +
Sbjct: 499 LQYI 502
|
| >3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562 | Back alignment and structure |
|---|
Score = 78.0 bits (192), Expect = 3e-15
Identities = 81/482 (16%), Positives = 154/482 (31%), Gaps = 42/482 (8%)
Query: 114 DLEYLDLSMNNFTGFQVPEFIGSLKELRYLNLSGSFFSGTIPQTLGNLSNLLYLDLNNFL 173
+ L LS N+ + ++P+ L ELR L LS + +L YLD+++
Sbjct: 53 RTKALSLSQNSISELRMPDI-SFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSH-- 109
Query: 174 DQSNQIDLEWLSGLSSLVYFNLGGADLSKAGAYWLEVFNKLHSFVELHLPNCNLPSLPLS 233
N++ ++SL + +L D + F L L L L L
Sbjct: 110 ---NRLQNISCCPMASLRHLDLSFNDFDVLPVC--KEFGNLTKLTFLGLSAAKFRQLDLL 164
Query: 234 FPSLNFASLQVLDLSNNDFNSTTPHWLFNITSLLCLDLGSNDLQGDIPDGFASLNSLQEL 293
+ S +LDL + L + + L L + S+N+L L
Sbjct: 165 PVAHLHLSCILLDLVSYHIKGGETESLQIPNTTV-LHLVFHPNSLFSVQVNMSVNALGHL 223
Query: 294 DLSGNSFLGGQLSRNLGKLCNLRTMILSRNNISSEVSDFLDGLSECTNSI---LLEKLEL 350
LS R + L L N + + +E L +
Sbjct: 224 QLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWKCSVKLFQFFWPRPVEYLNI 283
Query: 351 RFNQFTGI-----LPISLGSLKNLRHLVLWQNSFLGSIPPSIGNLTLLKELYLASNQMNG 405
T S +LK+L + FL S + L+ +
Sbjct: 284 YNLTITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAEMNIKMLSISDTPF 343
Query: 406 QKISDSYQHLKNQTELRTLVLNKARISDTISDWFWQLSLTLDELDVAYNELRGRVPNSLG 465
+ + + L + +D++ L L L + N L+ +L
Sbjct: 344 IHMVCP----PSPSSFTFLNFTQNVFTDSVFQGCSTLK-RLQTLILQRNGLKNFFKVALM 398
Query: 466 FNFPAKVDLSFNNFEG-------RLLLWSFNVTKLYLRDNSFSGLIPNDIGQNLPFLTDL 518
+ ++ + R W+ ++ L L N +G + + + L
Sbjct: 399 TKNMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTGSVFRCLPPKVKVLD-- 456
Query: 519 GNLKQLITLVISNNNLSGEIPLLFSNISFLYILDMSNNSLSGSTPESIGSLRTVKFLVLR 578
+ NN + IP +++ L L++++N L L +++++ L
Sbjct: 457 ----------LHNNRIM-SIPKDVTHLQALQELNVASNQLKSVPDGVFDRLTSLQYIWLH 505
Query: 579 NN 580
+N
Sbjct: 506 DN 507
|
| >3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562 | Back alignment and structure |
|---|
Score = 76.1 bits (187), Expect = 1e-14
Identities = 61/309 (19%), Positives = 111/309 (35%), Gaps = 19/309 (6%)
Query: 104 EISPSLLQLKDLEYLDLSMNNFTGFQVPEFIG--SLKELRYLNLSGSFFSGTIPQTLGNL 161
LQ+ + L L + + F V + +L L+ N+ + + T +
Sbjct: 185 GGETESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSE 244
Query: 162 SNLLYLDLNNFLDQSNQIDLEWLSGL-----SSLVYFNLGGADLSKAGAYWLEVF--NKL 214
LN L + + Y N+ +++ + L
Sbjct: 245 LTRGPTLLNVTLQHIETTWKCSVKLFQFFWPRPVEYLNIYNLTITERIDREEFTYSETAL 304
Query: 215 HSFVELHLPNCNLPSLPLSFPSLNFASLQVLDLSNNDFNSTTPHWLFNITSLLCLDLGSN 274
S + H+ N + FA + + LS +D + +S L+ N
Sbjct: 305 KSLMIEHVKN-QVFLFSKEALYSVFAEMNIKMLSISDTPFIHMVCPPSPSSFTFLNFTQN 363
Query: 275 DLQGDIPDGFASLNSLQELDLSGNSFLG-GQLSRNLGKLCNLRTMILSRNNISSEVSDFL 333
+ G ++L LQ L L N +++ + +L T+ +S N+++S D
Sbjct: 364 VFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRT 423
Query: 334 DGLSECTNSILLEKLELRFNQFTGILPISLGSLKNLRHLVLWQNSFLGSIPPSIGNLTLL 393
C + + L L N TG + L ++ L L N + SIP + +L L
Sbjct: 424 -----CAWAESILVLNLSSNMLTGSVFRCLPP--KVKVLDLHNNR-IMSIPKDVTHLQAL 475
Query: 394 KELYLASNQ 402
+EL +ASNQ
Sbjct: 476 QELNVASNQ 484
|
| >3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562 | Back alignment and structure |
|---|
Score = 71.4 bits (175), Expect = 3e-13
Identities = 52/320 (16%), Positives = 106/320 (33%), Gaps = 25/320 (7%)
Query: 78 IKLNLNNPFRDSFGSFEDDAGHELGGEISPSLLQLKDLEYLDLSMNNFTGFQVPEFIGS- 136
L+L F + + + L LQL +++ D + F G
Sbjct: 197 TVLHLVFHPNSLFSVQVNMSVNAL------GHLQLSNIKLNDENCQRLMTFLSELTRGPT 250
Query: 137 LKELRYLNLSGSFFSGTIPQTLGNLSNLLYLDLNNFLDQSNQIDLEWLSGLSSLVYFNLG 196
L + ++ ++ + YL++ N E+ ++L +
Sbjct: 251 LLNVTLQHIETTWKCSVKLFQFFWPRPVEYLNIYNLTITERIDREEFTYSETALKSLMIE 310
Query: 197 GADLSKAGAYWLEVFNKLHSFVELHLPNCNLPSLPLSFPSLNFASLQVLDLSNNDFNSTT 256
+++ L + P + + P + +S L+ + N F +
Sbjct: 311 HVKNQVFLFSKEALYSVFAEMNIKMLSISDTPFIHMVCPP-SPSSFTFLNFTQNVFTDSV 369
Query: 257 PHWLFNITSLLCLDLGSNDLQ--GDIPDGFASLNSLQELDLSGNSFLGGQLSRNLGKLCN 314
+ L L L N L+ + +++SL+ LD+S NS R +
Sbjct: 370 FQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAES 429
Query: 315 LRTMILSRNNISSEVSDFLDG----LSECTNSIL-----------LEKLELRFNQFTGIL 359
+ + LS N ++ V L L N I+ L++L + NQ +
Sbjct: 430 ILVLNLSSNMLTGSVFRCLPPKVKVLDLHNNRIMSIPKDVTHLQALQELNVASNQLKSVP 489
Query: 360 PISLGSLKNLRHLVLWQNSF 379
L +L+++ L N +
Sbjct: 490 DGVFDRLTSLQYIWLHDNPW 509
|
| >3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562 | Back alignment and structure |
|---|
Score = 70.7 bits (173), Expect = 5e-13
Identities = 62/347 (17%), Positives = 112/347 (32%), Gaps = 31/347 (8%)
Query: 238 NFASLQVLDLSNNDFNSTTPHWLFNITSLLCLDLGSNDLQGDIPDGFASLNSLQELDLSG 297
+ L+VL LS+N S H L LD+ N LQ I + SL+ LDLS
Sbjct: 74 FLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHNRLQN-IS--CCPMASLRHLDLSF 130
Query: 298 NSFLGGQLSRNLGKLCNLRTMILSRNNISSEVSDFLDGLSECTNSILLEKLELRFNQFTG 357
N F + + G L L + LS + L + L ++ +
Sbjct: 131 NDFDVLPVCKEFGNLTKLTFLGLSAAKFRQLDLLPVAHLHLSCILLDLVSYHIKGGETES 190
Query: 358 ILPISLGSLKNLRHLVLWQNSFLGSIPP-SIGNLTLLKELYLASNQMNGQKISDSYQHLK 416
+ + L HLV NS S+ L L+ + N N Q++ L
Sbjct: 191 LQIPNTTVL----HLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELT 246
Query: 417 NQTELRTLVLNKARISDTISDWFWQLSLTLDELDVAYNELRGRVPNSLGFNFPAKVDLSF 476
L + L + +L V Y +
Sbjct: 247 RGPTLLNVTLQHIETTWKC---SVKLFQFFWPRPVEYLNIYN------------------ 285
Query: 477 NNFEGRLLLWSFNVTKLYLRDNSFSGLIPNDIGQNLPFLTDLGNLKQLITLVISNNNLSG 536
R+ F ++ L+ + + L + ++ ++S ++
Sbjct: 286 LTITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSV--FAEMNIKMLSISDTPF 343
Query: 537 EIPLLFSNISFLYILDMSNNSLSGSTPESIGSLRTVKFLVLRNNYLS 583
+ + S L+ + N + S + +L+ ++ L+L+ N L
Sbjct: 344 IHMVCPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLK 390
|
| >3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562 | Back alignment and structure |
|---|
Score = 67.6 bits (165), Expect = 5e-12
Identities = 62/370 (16%), Positives = 114/370 (30%), Gaps = 43/370 (11%)
Query: 219 ELHLPNCNLPSLPLSFPSLNFASLQVLDLSNNDFNSTTPHWLFNITSLLCLDLGSNDLQG 278
+ N NL +P P + L LS N + + ++ L L L N ++
Sbjct: 35 MVDYSNRNLTHVPKDLP----PRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIR- 89
Query: 279 DIPDG-FASLNSLQELDLSGNSFLGGQLSR-NLGKLCNLRTMILSRNNISS-EVSDFLDG 335
+ F L+ LD+S N +L + + +LR + LS N+ V
Sbjct: 90 SLDFHVFLFNQDLEYLDVSHN-----RLQNISCCPMASLRHLDLSFNDFDVLPVCKEFGN 144
Query: 336 LSECTNSILLEKLELRFNQFTGILPISLGSLK-NLRHLVLWQNSFLGSIPPSIGNL-TLL 393
L++ L L L +F + + + L + L L G S+ T +
Sbjct: 145 LTK------LTFLGLSAAKFRQLDLLPVAHLHLSCILLDLVSYHIKGGETESLQIPNTTV 198
Query: 394 KELYLASNQMNGQKISDSYQHLKNQTELRTLVLNKARISDTISDWFWQLSLTLDELDVAY 453
L N + +++ S L + +L + LN ++
Sbjct: 199 LHLVFHPNSLFSVQVNMSVNALGH-LQLSNIKLNDENCQRLMTFLSELTRG--------- 248
Query: 454 NELRGRVPNSLGFNFPAKVDLSFNNFEGRLLLWSFNVTKLYLRDNSFSGLIPNDIGQNLP 513
P L + + W V L + + + + I +
Sbjct: 249 -------PTLLNVTLQHIETTWKCSVKLFQFFWPRPVEYLNIYNLTITERIDREEFTY-- 299
Query: 514 FLTDLGNLKQLITLVISNNNLSGEIPLLFSNISFLYILDMSNNSLSGSTPESIGSLRTVK 573
LK L+ + N L+S + + I +S + S +
Sbjct: 300 ---SETALKSLMIEHVKNQVFLFSKEALYSVFAEMNIKMLSISDTPFIHMVCPPSPSSFT 356
Query: 574 FLVLRNNYLS 583
FL N +
Sbjct: 357 FLNFTQNVFT 366
|
| >1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308 | Back alignment and structure |
|---|
Score = 78.2 bits (193), Expect = 5e-16
Identities = 67/305 (21%), Positives = 110/305 (36%), Gaps = 43/305 (14%)
Query: 104 EISPSLLQLKDLEYLDLSMNNFTGFQVPEFIGSLKELRYLNLSGSFFSGTIPQTLGNLSN 163
I P L + + +N T L + L+ G+ + + L+N
Sbjct: 11 VIFP-DPALANAIKIAAGKSNVTD---TVTQADLDGITTLSAFGTGVTTIEG--VQYLNN 64
Query: 164 LLYLDLNNFLDQSNQI-DLEWLSGLSSLVYFNLGGADLSKAGAYWLEVFNKLHSFVELHL 222
L+ L+L + NQI DL L L+ + L G L + L S L L
Sbjct: 65 LIGLELKD-----NQITDLAPLKNLTKITELELSGNPLKN-----VSAIAGLQSIKTLDL 114
Query: 223 PNCNLPSLPLSFPSLNFASLQVLDLSNNDFNSTTPHWLFNITSLLCLDLGSNDLQGDIPD 282
+ + + P ++LQVL L N + +P L +T+L L +G+ + D+
Sbjct: 115 TSTQITDVT---PLAGLSNLQVLYLDLNQITNISP--LAGLTNLQYLSIGNAQVS-DL-T 167
Query: 283 GFASLNSLQELDLSGNSFLGGQLS--RNLGKLCNLRTMILSRNNISSEVSDFLDGLSECT 340
A+L+ L L N ++S L L NL + L N IS + L+ +
Sbjct: 168 PLANLSKLTTLKADDN-----KISDISPLASLPNLIEVHLKNNQISD-----VSPLANTS 217
Query: 341 NSILLEKLELRFNQFTGILPISLGSLKNLRHLVLWQNSFLGSIPP-SIGNLTLLKELYLA 399
N L + L T + NL + + I P +I + L
Sbjct: 218 N---LFIVTLTNQTITN---QPVFYNNNLVVPNVVKGPSGAPIAPATISDNGTYASPNLT 271
Query: 400 SNQMN 404
N +
Sbjct: 272 WNLTS 276
|
| >1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308 | Back alignment and structure |
|---|
Score = 71.3 bits (175), Expect = 9e-14
Identities = 61/330 (18%), Positives = 118/330 (35%), Gaps = 66/330 (20%)
Query: 262 NITSLLCLDLGSNDLQGDIPDGFASLNSLQELDLSGNSFLGGQLSR--NLGKLCNLRTMI 319
+ + + + G +++ + A L+ + L G ++ + L NL +
Sbjct: 17 ALANAIKIAAGKSNVTDTVT--QADLDGITTLSAFGT-----GVTTIEGVQYLNNLIGLE 69
Query: 320 LSRNNISSEVSDFLDGLSECTNSILLEKLELRFNQFTGILPISLGSLKNLRHLVLWQNSF 379
L N I+ L L T + +LEL N + + L++++ L L
Sbjct: 70 LKDNQITD-----LAPLKNLTK---ITELELSGNPLKNVSA--IAGLQSIKTLDLTSTQ- 118
Query: 380 LGSIPPSIGNLTLLKELYLASNQMNGQKISDSYQHLKNQTELRTLVLNKARISDTISDWF 439
+ + P + L+ L+ LYL NQ I++ L T L+ L + A++SD
Sbjct: 119 ITDVTP-LAGLSNLQVLYLDLNQ-----ITN-ISPLAGLTNLQYLSIGNAQVSDLTP--L 169
Query: 440 WQLSLTLDELDVAYNELRGRVPNSLGFNFPAKVDLSFNNFEGRLLLWSFNVTKLYLRDNS 499
LS L L N++ + L N+ +++L++N
Sbjct: 170 ANLS-KLTTLKADDNKIS---------DISPLASLP-------------NLIEVHLKNNQ 206
Query: 500 FSGLIPNDIGQNLPFLTDLGNLKQLITLVISNNNLSGEIPLLFSNISFLYILDMSNNSLS 559
S + P L N L + ++N ++ + +N+ ++ S +
Sbjct: 207 ISDVSP------------LANTSNLFIVTLTNQTITNQPVFYNNNLVVPNVV--KGPSGA 252
Query: 560 GSTPESIGSLRTVKFLVLRNNYLSGKLPLS 589
P +I T L N S +S
Sbjct: 253 PIAPATISDNGTYASPNLTWNLTSFINNVS 282
|
| >2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386 | Back alignment and structure |
|---|
Score = 78.6 bits (194), Expect = 7e-16
Identities = 61/310 (19%), Positives = 103/310 (33%), Gaps = 51/310 (16%)
Query: 104 EISPSLLQLKDLEYLDLSMNNFT---GFQVPEFIGSLKELRYLNLSGSFFSGTIPQTLGN 160
+ LL+ ++ + LS N + E I S K+L S F +
Sbjct: 23 SVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEA 82
Query: 161 LSNLLYLDLNNFLDQSNQIDLEWLSGLSSLVYFNLGGADLSKAGAYWL-EVFNKLHSFVE 219
L L L+ L L L L + +K
Sbjct: 83 LRLL----------------LQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEH 126
Query: 220 LHLPNCN------------LPSLPLSFPSLNFASLQVLDLSNNDF-NSTTPHW---LFNI 263
L+L N L L ++ + N L+ + N N + W +
Sbjct: 127 LYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSH 186
Query: 264 TSLLCLDLGSNDL-----QGDIPDGFASLNSLQELDLSGNSF--LGGQ-LSRNLGKLCNL 315
L + + N + + + +G A L+ LDL N+F LG L+ L NL
Sbjct: 187 RLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNL 246
Query: 316 RTMILSRNNISSE-VSDFLDGLSECTNSILLEKLELRFNQFT--GILPIS---LGSLKNL 369
R + L+ +S+ + +D S+ N L L L++N+ + + + +L
Sbjct: 247 RELGLNDCLLSARGAAAVVDAFSKLENIGLQT-LRLQYNEIELDAVRTLKTVIDEKMPDL 305
Query: 370 RHLVLWQNSF 379
L L N F
Sbjct: 306 LFLELNGNRF 315
|
| >2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386 | Back alignment and structure |
|---|
Score = 70.5 bits (173), Expect = 3e-13
Identities = 62/323 (19%), Positives = 103/323 (31%), Gaps = 53/323 (16%)
Query: 158 LGNLSNL-LYLDLNNFLDQSNQIDLEWLSGLSSLVYFNLGGADLSKAGAYWL-EVFNKLH 215
+ S L L+ + + L S+ L G + A WL E
Sbjct: 1 MARFSIEGKSLKLDAITTEDEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKK 60
Query: 216 SFVELHLPNCNLPSLPLSFPS---------LNFASLQVLDLSNNDFNSTTPHWLFNI--- 263
+ + P L L + LS+N F T L +
Sbjct: 61 DLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSK 120
Query: 264 -TSLLCLDLGSNDL-------------QGDIPDGFASLNSLQELDLSGNSF--LGGQ-LS 306
T L L L +N L + + + L+ + N + +
Sbjct: 121 HTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWA 180
Query: 307 RNLGKLCNLRTMILSRNNISSE-VSDFL-DGLSECTNSILLEKLELRFNQFT--GILPIS 362
+ L T+ + +N I E + L +GL+ C L+ L+L+ N FT G ++
Sbjct: 181 KTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQE---LKVLDLQDNTFTHLGSSALA 237
Query: 363 --LGSLKNLRHLVLWQNSF-------LGSIPPSIGNLTLLKELYLASNQMN---GQKISD 410
L S NLR L L + + N+ L+ L L N++ + +
Sbjct: 238 IALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIG-LQTLRLQYNEIELDAVRTLKT 296
Query: 411 SYQHLKNQTELRTLVLNKARISD 433
+L L LN R S+
Sbjct: 297 VIDE--KMPDLLFLELNGNRFSE 317
|
| >2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386 | Back alignment and structure |
|---|
Score = 49.7 bits (119), Expect = 1e-06
Identities = 49/322 (15%), Positives = 92/322 (28%), Gaps = 64/322 (19%)
Query: 315 LRTMILSRNNISSE-VSDFLDGLSECTNSILLEKLELRFNQFT--GILPIS--LGSLKNL 369
+ L + I++E L E + ++++ L N +S + S K+L
Sbjct: 6 IEGKSLKLDAITTEDEKSVFAVLLEDDS---VKEIVLSGNTIGTEAARWLSENIASKKDL 62
Query: 370 RHLVLWQNSF----------LGSIPPSIGNLTLLKELYLASNQMNGQKISDSYQHLKNQT 419
L + ++ L + L+ N L T
Sbjct: 63 EIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHT 122
Query: 420 ELRTLVLNKARISD------------TISDWFWQLSLTLDELDVAYNELRGRVPNSLGFN 467
L L L+ + + + + L + N L
Sbjct: 123 PLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKT 182
Query: 468 FPA-----KVDLSFNNFE--------GRLLLWSFNVTKLYLRDNSFSGLIPNDIGQNLPF 514
F + V + N L + + L L+DN+F+ +G
Sbjct: 183 FQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFT-----HLG--SSA 235
Query: 515 LTD-LGNLKQLITLVISNNNLS-------GEIPLLFSNISFLYILDMSNNSLSGSTPESI 566
L L + L L +++ LS + NI L L + N + ++
Sbjct: 236 LAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIG-LQTLRLQYNEIELDAVRTL 294
Query: 567 GS-----LRTVKFLVLRNNYLS 583
+ + + FL L N S
Sbjct: 295 KTVIDEKMPDLLFLELNGNRFS 316
|
| >2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386 | Back alignment and structure |
|---|
Score = 48.2 bits (115), Expect = 4e-06
Identities = 57/297 (19%), Positives = 89/297 (29%), Gaps = 64/297 (21%)
Query: 105 ISPSLLQLKDLEYLDLSMNNFTGFQVPEFIGSLKE----------LRYLNLSGSFFSGT- 153
+S ++ KDLE + S + FTG E +L+ L + LS + F T
Sbjct: 52 LSENIASKKDLEIAEFS-DIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTA 110
Query: 154 ---IPQTLGNLSNLLYLDLNNFLDQSNQI----------------DLEWLSGLSSLVYFN 194
+ L + L +L L+N N + + L
Sbjct: 111 QEPLIDFLSKHTPLEHLYLHN-----NGLGPQAGAKIARALQELAVNKKAKNAPPLRSII 165
Query: 195 LGGADLSKAGAYWL-EVFNKLHSFVELHLPNCNL----PSLPLSFPSLNFASLQVLDLSN 249
G L + F + + + L L+VLDL +
Sbjct: 166 CGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQD 225
Query: 250 NDFNSTTPHWLFNI----TSLLCLDLGSNDLQGDIPDGFASL---------NSLQELDLS 296
N F L +L L L L G A++ LQ L L
Sbjct: 226 NTFTHLGSSALAIALKSWPNLRELGLNDCLLS---ARGAAAVVDAFSKLENIGLQTLRLQ 282
Query: 297 GNSF--LGGQ-LSRNLG-KLCNLRTMILSRNNISSE---VSDFLDGLSECTNSILLE 346
N + L + K+ +L + L+ N S E V + + S L E
Sbjct: 283 YNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEEDDVVDEIREVFSTRGRGELDE 339
|
| >3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457 | Back alignment and structure |
|---|
Score = 77.8 bits (192), Expect = 2e-15
Identities = 76/454 (16%), Positives = 139/454 (30%), Gaps = 92/454 (20%)
Query: 108 SLLQLKDLEYLDLSMNNFTGFQVPEFIGSLKELRYLNLSGSFFSGTIPQTLGNLSNLLYL 167
S QL L LD ++ T I L L L + + + T+ L +NL YL
Sbjct: 37 SEEQLATLTSLDCHNSSITDM---TGIEKLTGLTKLICTSNNIT-TLD--LSQNTNLTYL 90
Query: 168 DLNNFLDQSNQIDLEWLSGLSSLVYFNLGGADLSKAGAYWLEVFNKLHSFVELHLPNCNL 227
++ N++ ++ L+ L Y N L+K ++ L+ L
Sbjct: 91 ACDS-----NKLTNLDVTPLTKLTYLNCDTNKLTKL------DVSQNPLLTYLNCARNTL 139
Query: 228 PSLPLSFPSLNFASLQVLDLSNNDFNSTTPHWLFNITSLLCLDLGSNDLQGDIPDGFASL 287
+ +S + L LD N T + T L LD N + ++ +
Sbjct: 140 TEIDVS----HNTQLTELDCHLN--KKITKLDVTPQTQLTTLDCSFNKIT-ELD--VSQN 190
Query: 288 NSLQELDLSGNSFLGGQLSR-NLGKLCNLRTMILSRNNISSEVSDFLDGLSECTNSILLE 346
L L+ N +++ +L + L + S N ++ +D ++ T L
Sbjct: 191 KLLNRLNCDTN-----NITKLDLNQNIQLTFLDCSSNKLTE-----ID-VTPLTQ---LT 236
Query: 347 KLELRFNQFTGILPISLGSLKNLRHLVLWQNSFLGSIPPSIGNLTLLKELYLASNQMNGQ 406
+ N T + + +L L L Q L I + + T L +
Sbjct: 237 YFDCSVNPLT---ELDVSTLSKLTTLHCIQTD-LLEID--LTHNTQLIYFQAEGCRKI-- 288
Query: 407 KISDSYQHLKNQTELRTLVLNKARISDTISDWFWQLSLTLDELDVAYNELRGRVPNSLGF 466
+ + T+L L A I+ Q L L + EL
Sbjct: 289 ----KELDVTHNTQLYLLDCQAAGIT---ELDLSQNP-KLVYLYLNNTELT--------- 331
Query: 467 NFPAKVDLSFNNFEGRLLLWSFNVTKLYLRDNSFSGLIPNDIGQNLPFLTDLGNLKQLIT 526
++D+S N + L + ++ + +G + L
Sbjct: 332 ----ELDVSHNT----------KLKSLSCVNA------------HIQDFSSVGKIPALNN 365
Query: 527 LVISNNNLSGEIPLLFSNISFLYILDMSNNSLSG 560
+ +N S + G
Sbjct: 366 NFEAEGQTITMPKETLTNNSLTIAVSPDLLDQFG 399
|
| >3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457 | Back alignment and structure |
|---|
Score = 70.9 bits (174), Expect = 3e-13
Identities = 73/454 (16%), Positives = 141/454 (31%), Gaps = 91/454 (20%)
Query: 140 LRYLNLSGSFFSGTIPQTLGNLSNLLYLDLNNFLDQSNQI-DLEWLSGLSSLVYFNLGGA 198
+ T + L+ L LD +N + I D+ + L+ L
Sbjct: 20 FASEVAAAFEMQATDTISEEQLATLTSLDCHN-----SSITDMTGIEKLTGLTKLICTSN 74
Query: 199 DLSKAGAYWLEVFNKLHSFVELHLPNCNLPSLPLSFPSLNFASLQVLDLSNNDFNSTTPH 258
+++ L+ ++ + L + L +L ++ L L+ N
Sbjct: 75 NITT-----LD-LSQNTNLTYLACDSNKLTNLDVT----PLTKLTYLNCDTNKLTKLDVS 124
Query: 259 WLFNITSLLCLDLGSNDLQGDIPDGFASLNSLQELDLSGNSFLGGQLSRNLGKLCNLRTM 318
+T L C ++ + L ELD N + ++ L T+
Sbjct: 125 QNPLLTYLNCARNTLTEID------VSHNTQLTELDCHLNKKIT---KLDVTPQTQLTTL 175
Query: 319 ILSRNNISSEVSDFLDGLSECTNSILLEKLELRFNQFTGILPISLGSLKNLRHLVLWQNS 378
S N I+ LD +S+ L +L N T + L L L N
Sbjct: 176 DCSFNKITE-----LD-VSQNKL---LNRLNCDTNNITK---LDLNQNIQLTFLDCSSNK 223
Query: 379 FLGSIPPSIGNLTLLKELYLASNQMNGQKISDSYQHLKNQTELRTLVLNKARISDTISDW 438
L I + LT L + N + +S ++L TL + +
Sbjct: 224 -LTEID--VTPLTQLTYFDCSVNPLTELDVS-------TLSKLTTLHCIQTDLL------ 267
Query: 439 FWQLSLTLDELDVAYNELRGRVPNSLGFNFPAKVDLSFNNFEGRLLLWSFNVTKLYLRDN 498
E+D+ +N + + G ++D++ N + L +
Sbjct: 268 ---------EIDLTHN-TQLIYFQAEGCRKIKELDVTHNT----------QLYLLDCQAA 307
Query: 499 SFSGLIPNDIGQNLPFLTDLGNLKQLITLVISNNNLSGEIPLLFSNISFLYILDMSNNSL 558
+ L DL +L+ L ++N L+ E+ + S+ + L L N +
Sbjct: 308 GITEL-------------DLSQNPKLVYLYLNNTELT-ELDV--SHNTKLKSLSCVNAHI 351
Query: 559 SGSTPESIGSLRTVKFLVLRNNYLSGKLPLSLKN 592
+ +G + + +L N
Sbjct: 352 QDFSS--VGKIPALNNNFEAEGQTITMPKETLTN 383
|
| >3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457 | Back alignment and structure |
|---|
Score = 63.9 bits (156), Expect = 6e-11
Identities = 45/320 (14%), Positives = 94/320 (29%), Gaps = 44/320 (13%)
Query: 106 SPSLLQLKDLEYLDLSMNNFTGFQVPEFIGSLKELRYLNLSGSFFSGTIPQTLGNLSNLL 165
+ L LD S N T + K L LN + + + L L
Sbjct: 163 KLDVTPQTQLTTLDCSFNKITELD----VSQNKLLNRLNCDTNNIT-KLD--LNQNIQLT 215
Query: 166 YLDLNNFLDQSNQIDLEWLSGLSSLVYFNLGGADLSKAGAYWLEVFNKLHSFVELHLPNC 225
+LD ++ N++ ++ L+ L YF+ L++ + L LH
Sbjct: 216 FLDCSS-----NKLTEIDVTPLTQLTYFDCSVNPLTELD------VSTLSKLTTLHCIQT 264
Query: 226 NLPSLPLSFPSLNFASLQVLDLSNNDFNSTTPHWLFNITSLLCLDLGSNDLQGDIPDGFA 285
+L + L+ + L + + T L LD + + ++ +
Sbjct: 265 DLLEIDLT----HNTQLIYFQAEGC--RKIKELDVTHNTQLYLLDCQAAGIT-ELD--LS 315
Query: 286 SLNSLQELDLSGNSFLGGQLSR-NLGKLCNLRTMILSRNNISSEVSDFLDGLSECTNSIL 344
L L L+ +L+ ++ L+++ +I S
Sbjct: 316 QNPKLVYLYLNNT-----ELTELDVSHNTKLKSLSCVNAHIQD--------FSSVGKIPA 362
Query: 345 LEKLELRFNQFTGILPISLGSLKNLRHLVLWQNSFLG---SIPPSIGNLTLLKELYLASN 401
L Q + +L + + G +I P G + +
Sbjct: 363 LNNNFEAEGQTITMPKETLTNNSLTIAVSPDLLDQFGNPMNIEPGDGGVYDQATNTITWE 422
Query: 402 QMNGQKISDSYQHLKNQTEL 421
++ + +Y +
Sbjct: 423 NLSTDNPAVTYTFTSENGAI 442
|
| >3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457 | Back alignment and structure |
|---|
Score = 59.7 bits (145), Expect = 1e-09
Identities = 61/333 (18%), Positives = 112/333 (33%), Gaps = 80/333 (24%)
Query: 234 FPSLNFASLQVLDLSNNDFNSTTPHWLFNITSLLCLDLGSNDLQGDIPDGFASLNSLQEL 293
FP NFAS ++ + L +TSL D ++ + G L L +L
Sbjct: 15 FPDDNFASEVAAAFEMQATDTISEEQLATLTSL---DCHNSSITD--MTGIEKLTGLTKL 69
Query: 294 DLSGNSFLGGQLSR-NLGKLCNLRTMILSRNNISSEVSDFLDGLSECTNSILLEKLELRF 352
+ N ++ +L + NL + N +++ LD ++ T L L
Sbjct: 70 ICTSN-----NITTLDLSQNTNLTYLACDSNKLTN-----LD-VTPLTK---LTYLNCDT 115
Query: 353 NQFTGILPISLGSLKNLRHLVLWQNSFLGSIPPSIGNLTLLKELYLASNQMNGQKISDSY 412
N+ T + + L +L +N+ L I + + T L EL N+ +
Sbjct: 116 NKLT---KLDVSQNPLLTYLNCARNT-LTEID--VSHNTQLTELDCHLNKKI------TK 163
Query: 413 QHLKNQTELRTLVLNKARISDTISDWFWQLSLT----LDELDVAYNELRGRVPNSLGFNF 468
+ QT+L TL + +I++ L ++ L+ L+ N +
Sbjct: 164 LDVTPQTQLTTLDCSFNKITE--------LDVSQNKLLNRLNCDTNNIT----------- 204
Query: 469 PAKVDLSFNNFEGRLLLWSFNVTKLYLRDNSFSGLIPNDIGQNLPFLTDLGNLKQLITLV 528
L N +T L N + + D+ L QL
Sbjct: 205 ----KLDLNQNI--------QLTFLDCSSNKLTEI-------------DVTPLTQLTYFD 239
Query: 529 ISNNNLSGEIPLLFSNISFLYILDMSNNSLSGS 561
S N L+ S ++ L+ + + +
Sbjct: 240 CSVNPLTELDVSTLSKLTTLHCIQTDLLEIDLT 272
|
| >1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461 | Back alignment and structure |
|---|
Score = 76.9 bits (190), Expect = 4e-15
Identities = 80/446 (17%), Positives = 146/446 (32%), Gaps = 65/446 (14%)
Query: 113 KDLEYLDLSMNNFTGFQVPEFIGSLKELRYLNLSGSFFSGT----IPQTLGNLSNLLYLD 168
D++ LD+ + + E + L++ + + L + I L L L+
Sbjct: 3 LDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELN 62
Query: 169 LNNFLDQSNQIDLEWLSGLS--------SLVYFNLGGADLSKAGAYWL-EVFNKLHSFVE 219
L + N++ + + + +L L+ AG L L + E
Sbjct: 63 LRS-----NELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQE 117
Query: 220 LHLPNCNL--PSLPLSFPSL--NFASLQVLDLSNNDFNSTTPHWLFNI----TSLLCLDL 271
LHL + L L L L L+ L L ++ + L ++ L +
Sbjct: 118 LHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTV 177
Query: 272 GSNDLQGD----IPDGFASLN-SLQELDLSGNSFLGGQ----LSRNLGKLCNLRTMILSR 322
+ND+ + G L+ L L + L + +LR + L
Sbjct: 178 SNNDINEAGVRVLCQGLKDSPCQLEALKLESCG-VTSDNCRDLCGIVASKASLRELALGS 236
Query: 323 NNISSE-VSDFLDGLSECTNSILLEKLELRFNQFT--GILPIS--LGSLKNLRHLVLWQN 377
N + +++ GL ++ L L + T G + L + ++L+ L L N
Sbjct: 237 NKLGDVGMAELCPGLLHPSSR--LRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGN 294
Query: 378 SFLGSIPPSIGNL-----TLLKELYLASNQMNGQKISDSYQHLKNQTELRTLVLNKARIS 432
+ L+ L++ S S L L L ++ R+
Sbjct: 295 ELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLE 354
Query: 433 DT----ISDWFWQLSLTLDELDVAYNELRGRVPNSLGFNFPA-----KVDLSFNNF--EG 481
D + Q L L +A ++ +SL A ++DLS N G
Sbjct: 355 DAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAG 414
Query: 482 RLLLWS------FNVTKLYLRDNSFS 501
L L + +L L D +S
Sbjct: 415 ILQLVESVRQPGCLLEQLVLYDIYWS 440
|
| >1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461 | Back alignment and structure |
|---|
Score = 73.1 bits (180), Expect = 7e-14
Identities = 85/394 (21%), Positives = 133/394 (33%), Gaps = 44/394 (11%)
Query: 105 ISPSLLQLKDLEYLDLSMNNFTGFQVPEFIGSLKE----LRYLNLSGSFFSGT----IPQ 156
IS +L L L+L N V + L+ ++ L+L +G +
Sbjct: 48 ISSALRVNPALAELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSS 107
Query: 157 TLGNLSNLLYLDL-NNFLDQSNQIDL--EWLSGLSSLVYFNLGGADLSKAGAYWL-EVFN 212
TL L L L L +N L + L L L L LS A L V
Sbjct: 108 TLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLR 167
Query: 213 KLHSFVELHLPNCNL--PSLPLSFPSL--NFASLQVLDLSNNDFNSTTPHWLFNI----T 264
F EL + N ++ + + L + L+ L L + S L I
Sbjct: 168 AKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKA 227
Query: 265 SLLCLDLGSNDLQGD----IPDGFASLN-SLQELDLSGNSF--LGGQ-LSRNLGKLCNLR 316
SL L LGSN L + G + L+ L + G L R L +L+
Sbjct: 228 SLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLK 287
Query: 317 TMILSRNNISSE-VSDFLDGLSECTNSILLEKLELRFNQFT--GILPIS--LGSLKNLRH 371
+ L+ N + E + L E LE L ++ FT S L + L
Sbjct: 288 ELSLAGNELGDEGARLLCETLLEPGCQ--LESLWVKSCSFTAACCSHFSSVLAQNRFLLE 345
Query: 372 LVLWQNSFLGSIPPSIG-----NLTLLKELYLASNQMNGQKISDSYQHLKNQTELRTLVL 426
L + N + + ++L+ L+LA ++ S L LR L L
Sbjct: 346 LQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDL 405
Query: 427 NKARISDT----ISDWFWQLSLTLDELDVAYNEL 456
+ + D + + Q L++L +
Sbjct: 406 SNNCLGDAGILQLVESVRQPGCLLEQLVLYDIYW 439
|
| >1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461 | Back alignment and structure |
|---|
Score = 66.5 bits (163), Expect = 9e-12
Identities = 64/365 (17%), Positives = 111/365 (30%), Gaps = 54/365 (14%)
Query: 105 ISPSLLQLKDLEYLDLSMNNFTGFQVPEFIGSLKE----LRYLNLSGSFFSGT----IPQ 156
+S +L L L+ L LS N + L + L L L S +
Sbjct: 105 LSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLAS 164
Query: 157 TLGNLSNLLYLDLNNFLDQSNQIDLEWLSGLS--------SLVYFNLGGADLSKAGAYWL 208
L + L ++N N I+ + L L L ++ L
Sbjct: 165 VLRAKPDFKELTVSN-----NDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDL 219
Query: 209 -EVFNKLHSFVELHLPNCNL-----PSLPLSFPSLNFASLQVLDLSNNDFNSTTPHWLFN 262
+ S EL L + L L + L+ L + + L
Sbjct: 220 CGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSS-RLRTLWIWECGITAKGCGDLCR 278
Query: 263 I----TSLLCLDLGSNDLQGD----IPDGFASLN-SLQELDLSGNSFLGGQ----LSRNL 309
+ SL L L N+L + + + L+ L + S S L
Sbjct: 279 VLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCS-FTAACCSHFSSVL 337
Query: 310 GKLCNLRTMILSRNNISSE-VSDFLDGLSECTNSILLEKLELRFNQFT--GILPIS--LG 364
+ L + +S N + V + GL + + L L L + ++ L
Sbjct: 338 AQNRFLLELQISNNRLEDAGVRELCQGLGQPGSV--LRVLWLADCDVSDSSCSSLAATLL 395
Query: 365 SLKNLRHLVLWQNSFLGSIPPSIG-----NLTLLKELYLASNQMNGQKISDSYQHLKNQT 419
+ +LR L L N + + LL++L L + + K++
Sbjct: 396 ANHSLRELDLSNNCLGDAGILQLVESVRQPGCLLEQLVLYDIYWSEEMEDRLQALEKDKP 455
Query: 420 ELRTL 424
LR +
Sbjct: 456 SLRVI 460
|
| >1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461 | Back alignment and structure |
|---|
Score = 60.0 bits (146), Expect = 9e-10
Identities = 56/308 (18%), Positives = 102/308 (33%), Gaps = 36/308 (11%)
Query: 98 GHELGGEISPSLLQLKDLEYLDLSMNNFTGFQVPEFIGSLKE----LRYLNLSGSFFS-- 151
++ L D + L +S N+ V LK+ L L L +
Sbjct: 155 SAASCEPLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSD 214
Query: 152 --GTIPQTLGNLSNLLYLDL--NNFLDQS-NQIDLEWLSGLSSLVYFNLGGADLSKAGAY 206
+ + + ++L L L N D ++ L S L + ++ G
Sbjct: 215 NCRDLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCG 274
Query: 207 WL-EVFNKLHSFVELHLPNCNL-----PSLPLSFPSLNFASLQVLDLSNNDFNSTTPHWL 260
L V S EL L L L + L+ L + + F +
Sbjct: 275 DLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGC-QLESLWVKSCSFTAACCSHF 333
Query: 261 FNI----TSLLCLDLGSNDLQGD----IPDGFASLNS-LQELDLSGNSFLGGQ----LSR 307
++ LL L + +N L+ + G S L+ L L+ + L+
Sbjct: 334 SSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCD-VSDSSCSSLAA 392
Query: 308 NLGKLCNLRTMILSRNNISSE-VSDFLDGLSECTNSILLEKLELRFNQFTGILPISLGS- 365
L +LR + LS N + + ++ + + LLE+L L ++ + L +
Sbjct: 393 TLLANHSLRELDLSNNCLGDAGILQLVESVRQ--PGCLLEQLVLYDIYWSEEMEDRLQAL 450
Query: 366 LKNLRHLV 373
K+ L
Sbjct: 451 EKDKPSLR 458
|
| >1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461 | Back alignment and structure |
|---|
Score = 56.9 bits (138), Expect = 9e-09
Identities = 53/332 (15%), Positives = 104/332 (31%), Gaps = 46/332 (13%)
Query: 289 SLQELDLSGNSFLGGQLSRNLGKLCNLRTMILSRNNISSE-VSDFLDGLSECTNSILLEK 347
+Q LD+ + + L L + + L ++ D L L +
Sbjct: 4 DIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPA---LAE 60
Query: 348 LELRFNQFT--GILPISLG---SLKNLRHLVLWQNSF----LGSIPPSIGNLTLLKELYL 398
L LR N+ G+ + G ++ L L G + ++ L L+EL+L
Sbjct: 61 LNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHL 120
Query: 399 ASNQMNGQKISDSYQHLK-NQTELRTLVLNKARISDTISDWFWQL---SLTLDELDVAYN 454
+ N + + + L Q L L L +S + + EL V+ N
Sbjct: 121 SDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNN 180
Query: 455 ELRGRVPNSLGFNFPA------KVDLSFNNFE-------GRLLLWSFNVTKLYLRDNSFS 501
++ L + L ++ ++ +L L N
Sbjct: 181 DINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLG 240
Query: 502 GLIPNDIGQNLPFLTDLGNLKQLITLVISNNNLSGE-----IPLLFSNISFLYILDMSNN 556
D+G L +L TL I ++ + +L + S L L ++ N
Sbjct: 241 -----DVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKES-LKELSLAGN 294
Query: 557 SLSGSTPESIGSL-----RTVKFLVLRNNYLS 583
L + ++ L +++ +
Sbjct: 295 ELGDEGARLLCETLLEPGCQLESLWVKSCSFT 326
|
| >2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361 | Back alignment and structure |
|---|
Score = 75.3 bits (185), Expect = 8e-15
Identities = 49/189 (25%), Positives = 75/189 (39%), Gaps = 29/189 (15%)
Query: 226 NLPSLPLSFPSLNFASLQVLDLSNNDFNSTTPHWLF-NITSLLCLDLGSNDLQGDIPDG- 283
LP++P S P + +LDLS+N+ + W +T+L L L N L I
Sbjct: 29 QLPNVPQSLP----SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLN-FISSEA 83
Query: 284 FASLNSLQELDLSGNSFLGGQLSR----NLGKLCNLRTMILSRNNISSEVSDFLDGLSEC 339
F + +L+ LDLS N L L L ++L N+I + + +++
Sbjct: 84 FVPVPNLRYLDLSSN-----HLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQ- 137
Query: 340 TNSILLEKLELRFNQFTGILP---ISLGSLKNLRHLVLWQNSFLGSIPP-SIGNLTLLKE 395
L+KL L NQ + L L L L N L +P + L +
Sbjct: 138 -----LQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNK-LKKLPLTDLQKLPAWVK 191
Query: 396 --LYLASNQ 402
LYL +N
Sbjct: 192 NGLYLHNNP 200
|
| >2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361 | Back alignment and structure |
|---|
Score = 69.1 bits (169), Expect = 8e-13
Identities = 37/162 (22%), Positives = 62/162 (38%), Gaps = 14/162 (8%)
Query: 219 ELHLPNCNLPSLPLSFPSLNFASLQVLDLSNNDFNSTTPHWLFNITSLLCLDLGSNDLQG 278
L L + NL L + +L L LS+N N + + +L LDL SN L
Sbjct: 43 LLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNHLH- 101
Query: 279 DIPDG-FASLNSLQELDLSGNSFLGGQLSR----NLGKLCNLRTMILSRNNISSEVSDFL 333
+ + F+ L +L+ L L N + + L+ + LS+N IS + +
Sbjct: 102 TLDEFLFSDLQALEVLLLYNN-----HIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELI 156
Query: 334 DGLSECTNSILLEKLELRFNQFTGILPISLGSLKNLRHLVLW 375
++ L L+L N+ + L L L+
Sbjct: 157 KDGNKLPK---LMLLDLSSNKLKKLPLTDLQKLPAWVKNGLY 195
|
| >2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361 | Back alignment and structure |
|---|
Score = 67.2 bits (164), Expect = 3e-12
Identities = 40/203 (19%), Positives = 76/203 (37%), Gaps = 15/203 (7%)
Query: 210 VFNKLHSFVELHLPNCNLPSLP-LSFPSLNFASLQVLDLSNNDFNSTTPHWLFNITSLLC 268
+L + L L + +L + +F + +L+ LDLS+N ++ ++ +L
Sbjct: 59 TPTRLTNLHSLLLSHNHLNFISSEAFVPVP--NLRYLDLSSNHLHTLDEFLFSDLQALEV 116
Query: 269 LDLGSNDLQGDIPDG-FASLNSLQELDLSGN--SFLGGQLSRNLGKLCNLRTMILSRNNI 325
L L +N + + F + LQ+L LS N S +L ++ KL L + LS N +
Sbjct: 117 LLLYNNHIV-VVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKL 175
Query: 326 SSEVSDFLDGLSECTNSILLEKLELRFNQFT----GILPISLGSLKNLRHLVLWQNSFLG 381
L L + + L L N S + L ++ +Q
Sbjct: 176 KKLPLTDLQKLP----AWVKNGLYLHNNPLECDCKLYQLFSHWQYRQLSSVMDFQEDLYC 231
Query: 382 SIPPSIGNLTLLKELYLASNQMN 404
+ N+ L + + +
Sbjct: 232 MHSKKLHNIFSLDFFNCSEYKES 254
|
| >2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361 | Back alignment and structure |
|---|
Score = 62.2 bits (151), Expect = 1e-10
Identities = 37/168 (22%), Positives = 59/168 (35%), Gaps = 15/168 (8%)
Query: 114 DLEYLDLSMNNFTGFQVPEFIGSLKELRYLNLSGSFFSGTIPQTLGNLSNLLYLDLNNFL 173
LDLS NN + + L L L LS + + + + NL YLDL++
Sbjct: 40 YTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSS-- 97
Query: 174 DQSNQI-DLEW--LSGLSSLVYFNLGGADLSKAGAYWLEVFNKLHSFVELHLPNCNLPSL 230
N + L+ S L +L L + F + +L+L +
Sbjct: 98 ---NHLHTLDEFLFSDLQALEVLLLYNNHIVVVDR---NAFEDMAQLQKLYLSQNQISRF 151
Query: 231 PL-SFPSL-NFASLQVLDLSNNDFNSTTPHWLFNITSL--LCLDLGSN 274
P+ L +LDLS+N L + + L L +N
Sbjct: 152 PVELIKDGNKLPKLMLLDLSSNKLKKLPLTDLQKLPAWVKNGLYLHNN 199
|
| >2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361 | Back alignment and structure |
|---|
Score = 46.8 bits (111), Expect = 1e-05
Identities = 24/110 (21%), Positives = 39/110 (35%), Gaps = 15/110 (13%)
Query: 489 NVTKLYLRDNSFSGLIPNDIGQNLPFLTDL---------------GNLKQLITLVISNNN 533
L L N+ S L L L L + L L +S+N+
Sbjct: 40 YTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNH 99
Query: 534 LSGEIPLLFSNISFLYILDMSNNSLSGSTPESIGSLRTVKFLVLRNNYLS 583
L LFS++ L +L + NN + + + ++ L L N +S
Sbjct: 100 LHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQIS 149
|
| >3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571 | Back alignment and structure |
|---|
Score = 75.0 bits (184), Expect = 2e-14
Identities = 51/317 (16%), Positives = 92/317 (29%), Gaps = 83/317 (26%)
Query: 107 PSLLQLKDLEYLDLSMNNFTGFQVPEFIGSLKELRYLNLSGSFFSGTIPQTLGNLSNLLY 166
+ L L+ N + +P+ + ++ L ++ + ++P+ +L Y
Sbjct: 53 LKECLINQFSELQLNRLNLS--SLPDNLP--PQITVLEITQNALI-SLPELPASLE---Y 104
Query: 167 LDLNNFLDQSNQIDLEWLSGLSSLVYFNLGGADLSKAGAYWLEVFNKLHSFVELHLPNCN 226
LD + N+ LS L L S L + N
Sbjct: 105 LDACD-----NR-----LSTLPEL-----------------------PASLKHLDVDNNQ 131
Query: 227 LPSLPLSFPSLNFASLQVLDLSNNDFNSTTPHWLFNITSLLCLDLGSNDLQGDIPDGFAS 286
L LP A L+ ++ NN TSL L + +N L +P+
Sbjct: 132 LTMLPELP-----ALLEYINADNNQLTMLPE----LPTSLEVLSVRNNQLT-FLPE---L 178
Query: 287 LNSLQELDLSGNSFLGGQLSRNLGKLCNLRTMILSRNNISSEVSDFLDGLSECTNSILLE 346
SL+ LD+S N L + +
Sbjct: 179 PESLEALDVSTNLL--ESLPAVPVRNHHSEE--------------------------TEI 210
Query: 347 KLELRFNQFTGILPISLGSLKNLRHLVLWQNSFLGSIPPSIGNLTLLKELYLASNQMNGQ 406
R N+ T +P ++ SL ++L N I S+ T + + +
Sbjct: 211 FFRCRENRITH-IPENILSLDPTCTIILEDNPLSSRIRESLSQQTAQPDYHGPRIYFSMS 269
Query: 407 KISDSYQHLKNQTELRT 423
+ H +
Sbjct: 270 DGQQNTLHRPLADAVTA 286
|
| >3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571 | Back alignment and structure |
|---|
Score = 68.5 bits (167), Expect = 2e-12
Identities = 49/325 (15%), Positives = 86/325 (26%), Gaps = 77/325 (23%)
Query: 209 EVFNKLHSFVELHLPNCNLPSLPLSFPSLNFASLQVLDLSNNDFNSTTPHWLFNITSLLC 268
+ F+ + + LP N L L+ + S+ P L +
Sbjct: 28 DYFSAWDKWEKQALPGENRNEAVSLLKECLINQFSELQLNRLNL-SSLPDNLP--PQITV 84
Query: 269 LDLGSNDLQGDIPDGFASLNSLQELDLSGNSFLGGQLSRNLGKLCNLRTMILSRNNISSE 328
L++ N L +P+ SL+ LD N +LS +L+ + + N ++
Sbjct: 85 LEITQNALI-SLPE---LPASLEYLDACDN-----RLSTLPELPASLKHLDVDNNQLTM- 134
Query: 329 VSDFLDGLSECTNSILLEKLELRFNQFTGILPISLGSLKNLRHLVLWQNSFLGSIPPSIG 388
L E LE + NQ T + +L L + N L +P
Sbjct: 135 -------LPELPAL--LEYINADNNQLTMLPE----LPTSLEVLSVRNNQ-LTFLPELPE 180
Query: 389 NLTLLKELYLASNQMNGQKISDSYQHLKNQTELRTLVLNKARISDTISDWFWQLSLTLDE 448
+L L +++N + + T
Sbjct: 181 SLE---ALDVSTNLL-------------------------ESLPAVPVRN-HHSEETEIF 211
Query: 449 LDVAYNELRGRVPNSLGFNFPAKVDLSFNNFEGRLLLWSFNVTKLYLRDNSFSGLIPNDI 508
N + +P ++ L + L DN S I +
Sbjct: 212 FRCRENRIT-HIPENIL-------SLD-------------PTCTIILEDNPLSSRIRESL 250
Query: 509 GQNLPFLTDLGNLKQLITLVISNNN 533
Q G N
Sbjct: 251 SQQTAQPDYHGPRIYFSMSDGQQNT 275
|
| >3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571 | Back alignment and structure |
|---|
Score = 67.3 bits (164), Expect = 6e-12
Identities = 56/334 (16%), Positives = 102/334 (30%), Gaps = 71/334 (21%)
Query: 230 LPLSFPSLNFASLQVLDLSNNDFNSTTPHWLFNI----TSLLCLDLGSNDLQGDIPDGFA 285
+ + P N SL N S T F+ N+ + +
Sbjct: 1 MSIMLPINNNFSLSQNSFYNT--ISGTYADYFSAWDKWEKQALPGENRNEAVSLLKECL- 57
Query: 286 SLNSLQELDLSGNSFLGGQLSRNLGKLCNLRTMILSRNNISSEVSDFLDGLSECTNSILL 345
+N EL L+ + L NL + + +++N + S + + L
Sbjct: 58 -INQFSELQLNRLNL--SSLPDNLPP--QITVLEITQNALIS----LPELPAS------L 102
Query: 346 EKLELRFNQFTGILPISLGSLKNLRHLVLWQNSFLGSIPPSIGNLTLLKELYLASNQMNG 405
E L+ N+ + LP SLK+L + N L +P L + + +NQ+
Sbjct: 103 EYLDACDNRLS-TLPELPASLKHLD---VDNNQ-LTMLPELPALL---EYINADNNQL-- 152
Query: 406 QKISDSYQHLKNQTELRTLVLNKARISDTISDWFWQLSLTLDELDVAYNELRGRVPNSLG 465
+ + L L + +++ + + L LDV+ N L +P
Sbjct: 153 TMLPELPTSL------EVLSVRNNQLT-FLPELPESLE----ALDVSTNLLE-SLPAVPV 200
Query: 466 FNFPAKVDLSFNNFEGRLLLWSFNVTKLYLRDNSFSGLIPNDIGQNLPFLTDLGNLKQLI 525
R R+N + + P +I L
Sbjct: 201 ----------------RNHHSEETEIFFRCRENRITHI-PENILS----------LDPTC 233
Query: 526 TLVISNNNLSGEIPLLFSNISFLYILDMSNNSLS 559
T+++ +N LS I S + S
Sbjct: 234 TIILEDNPLSSRIRESLSQQTAQPDYHGPRIYFS 267
|
| >3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571 | Back alignment and structure |
|---|
Score = 66.5 bits (162), Expect = 1e-11
Identities = 57/335 (17%), Positives = 99/335 (29%), Gaps = 50/335 (14%)
Query: 112 LKDLEYLDLSMNNFTGFQVPEFIGSLKELRYLNLSGSFFSGTIPQTLGNLSNLLYLDLNN 171
+ L+++ N +PE S L YL+ + S T+P+ +L + LD++N
Sbjct: 79 PPQITVLEITQNALI--SLPELPAS---LEYLDACDNRLS-TLPELPASLKH---LDVDN 129
Query: 172 FLDQSNQIDLEWL-SGLSSLVYFNLGGADLSKAGAYWLEVFNKLHSFVELHLPNCNLPSL 230
NQ L L + L Y N L+ + S L + N L L
Sbjct: 130 -----NQ--LTMLPELPALLEYINADNNQLT-------MLPELPTSLEVLSVRNNQLTFL 175
Query: 231 PLSFPSLNFASLQVLDLSNNDFNSTTPHWLFNITSL----LCLDLGSNDLQGDIPDGFAS 286
P SL+ LD+S N + P + N + IP+ S
Sbjct: 176 PELPE-----SLEALDVSTNLL-ESLPAVPVRNHHSEETEIFFRCRENRIT-HIPENILS 228
Query: 287 LNSLQELDLSGN---SFLGGQLSRNLGKLCNLRTMILSRNNISSEVSDFLDGLSECTNSI 343
L+ + L N S + LS+ + I + + + T
Sbjct: 229 LDPTCTIILEDNPLSSRIRESLSQQTAQPDYHGPRIYFSMSDGQQNTLHRPLADAVTAWF 288
Query: 344 LLEKLELRFNQFTGI-----------LPISLGSLKNLRHLVLWQNSFLGSIPPSIGNLTL 392
K + L + R+ ++ + + +
Sbjct: 289 PENKQSDVSQIWHAFEHEEHANTFSAFLDRLSDTVSARNTSGFREQ-VAAWLEKLSASAE 347
Query: 393 LKELYLASNQMNGQKISDSYQHLKNQTELRTLVLN 427
L++ A + D N LV
Sbjct: 348 LRQQSFAVAADATESCEDRVALTWNNLRKTLLVHQ 382
|
| >3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571 | Back alignment and structure |
|---|
Score = 63.1 bits (153), Expect = 1e-10
Identities = 57/339 (16%), Positives = 103/339 (30%), Gaps = 92/339 (27%)
Query: 262 NITSLLCLDLGSNDLQGDIPDGFASLNSLQELDLSGNSFLGGQLSRNLGKLCNLRTMILS 321
N L + N + G D F++ + ++ L G + + + L+
Sbjct: 8 NNNFSLSQNSFYNTISGTYADYFSAWDKWEKQALPGENRNEAVSLLKECLINQFSELQLN 67
Query: 322 RNNISSEVSDFLDGLSECTNSILLEKLELRFNQFTGILPISLGSLKNLRHLVLWQNSFLG 381
R N+SS + D L + LE+ N + +L +L N L
Sbjct: 68 RLNLSS-LPDNL-----PPQ---ITVLEITQNALISLPE----LPASLEYLDACDNR-LS 113
Query: 382 SIPPSIGNLTLLKELYLASNQMNGQKISDSYQHLKNQTELRTLVLNKARISDTISDWFWQ 441
++P +L K L + +NQ L L + +
Sbjct: 114 TLPELPASL---KHLDVDNNQ------------------LTML-------PELPA----- 140
Query: 442 LSLTLDELDVAYNELRGRVPNSLGFNFPAKVDLSFNNFEGRLLLWSFNVTKLYLRDNSFS 501
L+ ++ N+L +P ++ L +R+N +
Sbjct: 141 ---LLEYINADNNQLT-MLPELPT-----------------------SLEVLSVRNNQLT 173
Query: 502 GLIPNDIGQNLPFLTDLGNLKQLITLVISNNNLSG---EIPLLFSNISFLYILDMSNNSL 558
L + L L +S N L + N +
Sbjct: 174 FLPEL--------------PESLEALDVSTNLLESLPAVPVRNHHSEETEIFFRCRENRI 219
Query: 559 SGSTPESIGSLRTVKFLVLRNNYLSGKLPLSLKNCTFQE 597
+ PE+I SL ++L +N LS ++ SL T Q
Sbjct: 220 T-HIPENILSLDPTCTIILEDNPLSSRIRESLSQQTAQP 257
|
| >3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571 | Back alignment and structure |
|---|
Score = 55.0 bits (132), Expect = 5e-08
Identities = 44/304 (14%), Positives = 85/304 (27%), Gaps = 31/304 (10%)
Query: 111 QLKDLEYLDLSMNNFTGFQVPEFIGSLKELRYLNLSGSFFSGTIPQTLGNLSNLLYLDLN 170
L++LD+ N T +PE L+ +N + + +P+ +L L +
Sbjct: 118 LPASLKHLDVDNNQLT--MLPELPALLEY---INADNNQLT-MLPELPTSLE---VLSVR 168
Query: 171 NFLDQSNQIDLEWLSGLSSLVYFNLGGADLSKAGAYWLEVFNKLHSFVELHLPNCNLPSL 230
N NQ+ SL ++ L A + + + + + +
Sbjct: 169 N-----NQLT-FLPELPESLEALDVSTNLLESLPAVPVRNHHSEETEIFFRCRENRITHI 222
Query: 231 PLSFPSLNFASLQVLDLSNNDFNSTTPHWLFNITSLLCLDLGSNDLQGDIPDGFASLNSL 290
P + SL+ + L +N +S L T+ D + + DG +
Sbjct: 223 PENILSLD--PTCTIILEDNPLSSRIRESLSQQTAQ--PDYHGPRIYFSMSDGQQNTLHR 278
Query: 291 QELDLSGNSFLGGQLSRNLGKLCNLRTMILSRNNISSEVSDFLDGLSECTNSILLEKLEL 350
D F + S + F L ++++
Sbjct: 279 PLADAVTAWFPENKQSDVSQIWHAFEHEEHAN--------TFSAFLDRLSDTVSARNTSG 330
Query: 351 RFNQFTGILPISLGSLKNLRHLVLWQNSFLGSIPPSIGNLTLLKELYLASNQMNGQKISD 410
Q L L + LR S + L L + Q
Sbjct: 331 FREQVAAWLE-KLSASAELRQQSFAVA---ADATESCEDRVALTWNNLRKTLLVHQASEG 386
Query: 411 SYQH 414
+ +
Sbjct: 387 LFDN 390
|
| >2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220 | Back alignment and structure |
|---|
Score = 70.8 bits (174), Expect = 4e-14
Identities = 41/159 (25%), Positives = 68/159 (42%), Gaps = 22/159 (13%)
Query: 227 LPSLPLSFPSLNFASLQVLDLSNNDFNSTTPHWLF-NITSLLCLDLGSNDLQGDIPDG-F 284
L +P P L L+NN+F +F + L ++ +N + DI +G F
Sbjct: 23 LNKIPEHIP----QYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKIT-DIEEGAF 77
Query: 285 ASLNSLQELDLSGNSFLGGQL----SRNLGKLCNLRTMILSRNNISSEVSDFLDGLSECT 340
+ + E+ L+ N +L + L +L+T++L N I+ +D GLS
Sbjct: 78 EGASGVNEILLTSN-----RLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSS-- 130
Query: 341 NSILLEKLELRFNQFTGILPISLGSLKNLRHLVLWQNSF 379
+ L L NQ T + P + +L +L L L N F
Sbjct: 131 ----VRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPF 165
|
| >2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220 | Back alignment and structure |
|---|
Score = 48.9 bits (117), Expect = 1e-06
Identities = 33/144 (22%), Positives = 57/144 (39%), Gaps = 14/144 (9%)
Query: 114 DLEYLDLSMNNFTGFQVPEFIGSLKELRYLNLSGSFFSGTIPQTLGNLSNLLYLDLNNFL 173
L L+ N FT + L +LR +N S + + S + + L +
Sbjct: 33 YTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTS-- 90
Query: 174 DQSNQI-DLEW--LSGLSSLVYFNLGGADLSKAGAYWLEVFNKLHSFVELHLPNCNLPSL 230
N++ +++ GL SL L ++ G + F L S L L + + ++
Sbjct: 91 ---NRLENVQHKMFKGLESLKTLMLRSNRITCVGN---DSFIGLSSVRLLSLYDNQITTV 144
Query: 231 PL-SFPSLNFASLQVLDLSNNDFN 253
+F +L SL L+L N FN
Sbjct: 145 APGAFDTL--HSLSTLNLLANPFN 166
|
| >2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220 | Back alignment and structure |
|---|
Score = 46.6 bits (111), Expect = 7e-06
Identities = 26/116 (22%), Positives = 48/116 (41%), Gaps = 15/116 (12%)
Query: 320 LSRNNISS-EVSDFLDGLSECTNSILLEKLELRFNQFTGILPISLGSLKNLRHLVLWQNS 378
L+ N + E + L + L K+ N+ T I + + ++L N
Sbjct: 39 LNNNEFTVLEATGIFKKLPQ------LRKINFSNNKITDIEEGAFEGASGVNEILLTSNR 92
Query: 379 FLGSIPPSI-GNLTLLKELYLASNQMNGQKI-SDSYQHLKNQTELRTLVLNKARIS 432
L ++ + L LK L L SN++ + +DS+ L + +R L L +I+
Sbjct: 93 -LENVQHKMFKGLESLKTLMLRSNRI--TCVGNDSFIGL---SSVRLLSLYDNQIT 142
|
| >2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220 | Back alignment and structure |
|---|
Score = 45.4 bits (108), Expect = 2e-05
Identities = 21/110 (19%), Positives = 44/110 (40%), Gaps = 15/110 (13%)
Query: 489 NVTKLYLRDNSFSGLIPNDIGQNLPFLTDLG---------------NLKQLITLVISNNN 533
+L L +N F+ L I + LP L + + +++++N
Sbjct: 33 YTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNR 92
Query: 534 LSGEIPLLFSNISFLYILDMSNNSLSGSTPESIGSLRTVKFLVLRNNYLS 583
L +F + L L + +N ++ +S L +V+ L L +N ++
Sbjct: 93 LENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQIT 142
|
| >2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270 | Back alignment and structure |
|---|
Score = 70.8 bits (174), Expect = 8e-14
Identities = 51/174 (29%), Positives = 76/174 (43%), Gaps = 13/174 (7%)
Query: 233 SFPSLNFASLQVLDLSNNDFNSTTPHWLFNITSLLCLDLGSNDLQGDIPDG-FASLNSLQ 291
+ PS A + LDL +N +S +T L L L N LQ +P G F L +L+
Sbjct: 30 AIPSNIPADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQ-TLPAGIFKELKNLE 88
Query: 292 ELDLSGNSFLGGQLSRNL-GKLCNLRTMILSRNNISSEVSDFLDGLSECTNSILLEKLEL 350
L ++ N L + +L NL + L RN + S D L++ L L L
Sbjct: 89 TLWVTDNKL--QALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTK------LTYLSL 140
Query: 351 RFNQFTGILPISLGSLKNLRHLVLWQNSFLGSIPPSI-GNLTLLKELYLASNQM 403
+N+ + L +L+ L L+ N L +P LT LK L L +NQ+
Sbjct: 141 GYNELQSLPKGVFDKLTSLKELRLYNNQ-LKRVPEGAFDKLTELKTLKLDNNQL 193
|
| >2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270 | Back alignment and structure |
|---|
Score = 64.2 bits (157), Expect = 1e-11
Identities = 45/174 (25%), Positives = 73/174 (41%), Gaps = 20/174 (11%)
Query: 210 VFNKLHSFVELHLPNCNLPSLPLS-FPSLNFASLQVLDLSNNDFNSTTPHWLFNITSLLC 268
F++L L+L + L +LP F L +L+ L +++N + + +L
Sbjct: 56 AFHRLTKLRLLYLNDNKLQTLPAGIFKELK--NLETLWVTDNKLQALPIGVFDQLVNLAE 113
Query: 269 LDLGSNDLQGDIPDG-FASLNSLQELDLSGNSFLGGQL----SRNLGKLCNLRTMILSRN 323
L L N L+ +P F SL L L L N +L KL +L+ + L N
Sbjct: 114 LRLDRNQLK-SLPPRVFDSLTKLTYLSLGYN-----ELQSLPKGVFDKLTSLKELRLYNN 167
Query: 324 NISSEVSDFLDGLSECTNSILLEKLELRFNQFTGILPISLGSLKNLRHLVLWQN 377
+ D L+E L+ L+L NQ + + SL+ L+ L L +N
Sbjct: 168 QLKRVPEGAFDKLTE------LKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQEN 215
|
| >2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270 | Back alignment and structure |
|---|
Score = 62.3 bits (152), Expect = 5e-11
Identities = 52/192 (27%), Positives = 69/192 (35%), Gaps = 21/192 (10%)
Query: 114 DLEYLDLSMNNFTGFQVPEFIGSLKELRYLNLSGSFFSGTIPQTLGNLSNLLYLDLNNFL 173
D + LDL N + F L +LR L L+ + L NL L + +
Sbjct: 38 DTKKLDLQSNKLSSLPSKAFHR-LTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTD-- 94
Query: 174 DQSNQ---IDLEWLSGLSSLVYFNLGGADLSK--AGAYWLEVFNKLHSFVELHLPNCNLP 228
N+ + + L +L L L VF+ L L L L
Sbjct: 95 ---NKLQALPIGVFDQLVNLAELRLDRNQLKSLPPR-----VFDSLTKLTYLSLGYNELQ 146
Query: 229 SLPL-SFPSLNFASLQVLDLSNNDFNSTTPHWLF-NITSLLCLDLGSNDLQGDIPDGFAS 286
SLP F L SL+ L L NN P F +T L L L +N L+ F S
Sbjct: 147 SLPKGVFDKL--TSLKELRLYNNQLKRV-PEGAFDKLTELKTLKLDNNQLKRVPEGAFDS 203
Query: 287 LNSLQELDLSGN 298
L L+ L L N
Sbjct: 204 LEKLKMLQLQEN 215
|
| >4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350 | Back alignment and structure |
|---|
Score = 72.2 bits (177), Expect = 8e-14
Identities = 47/288 (16%), Positives = 86/288 (29%), Gaps = 49/288 (17%)
Query: 118 LDLSMNNFTGFQVPEFIGSLKELRYLNLSGSFFSGTIPQTLGNLSNLLYLDLNNFLDQSN 177
+ T ++P + + L + +L ++++ N
Sbjct: 14 FLCQESKVT--EIPSDL--PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQ-----N 64
Query: 178 QIDLEWLSGLSSLVYFNLGGADLSKAGAYWLEVFNKLHSFVELHLPNCN-LPSLPLSFPS 236
+ L + + +VF+ L E+ + N L +
Sbjct: 65 DV----LEVIEA-------------------DVFSNLPKLHEIRIEKANNLLYINPEAFQ 101
Query: 237 LNFASLQVLDLSNNDFNSTTPHWLFNITSLLCLDLGSNDLQGDIPDG-FASL-NSLQELD 294
N +LQ L +SN + + LD+ N I F L L
Sbjct: 102 -NLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILW 160
Query: 295 LSGNSFLGGQLSRNLGKLCNLRTMILSRNN-ISSEVSDFLDGLSECTNSILLEKLELRFN 353
L+ N ++ + L + LS NN + +D G S L++
Sbjct: 161 LNKNGI--QEIHNSAFNGTQLDELNLSDNNNLEELPNDVFHGASG------PVILDISRT 212
Query: 354 QFTGILPISLGSLKNLRHLVLWQNSFLGSIPPSIGNLTLLKELYLASN 401
+ + L +LK LR + L P++ L L E L
Sbjct: 213 RIHSLPSYGLENLKKLRARSTYNLKKL----PTLEKLVALMEASLTYP 256
|
| >4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350 | Back alignment and structure |
|---|
Score = 64.8 bits (158), Expect = 2e-11
Identities = 35/228 (15%), Positives = 65/228 (28%), Gaps = 38/228 (16%)
Query: 233 SFPSLNFASLQVLDLSNNDFNSTTPHWLFNITSLLCLDLGSNDLQGDIPDG-FASLNSLQ 291
PS + L L +++ ND+ I F++L L
Sbjct: 23 EIPSDLPRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLH 82
Query: 292 ELDLSGNSFLGGQLSRNLGKLCNLRTMILSRNNISSEVSDFLDGLSECTNSILLEKLELR 351
E+ + NN+ + L L+ L +
Sbjct: 83 EIRIEKA------------------------NNLLYINPEAFQNLPN------LQYLLIS 112
Query: 352 FNQFTGILPISLGSLKNLRHLVLWQNSFLGSIPP-SIGNLT-LLKELYLASNQMNGQKIS 409
+ + L + N + +I S L+ L+L N + Q+I
Sbjct: 113 NTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGI--QEIH 170
Query: 410 DSYQHLKNQTELRTLVLNKARISDTISDWFWQLSLTLDELDVAYNELR 457
+S + EL N + + +D F S LD++ +
Sbjct: 171 NSAFNGTQLDELNLSDNN--NLEELPNDVFHGAS-GPVILDISRTRIH 215
|
| >4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350 | Back alignment and structure |
|---|
Score = 59.1 bits (143), Expect = 1e-09
Identities = 48/320 (15%), Positives = 89/320 (27%), Gaps = 75/320 (23%)
Query: 241 SLQVLDLSNNDFNSTTPHWLFNITSLLCLDLGSNDLQGDIPDGFASLNSLQELDLSGNSF 300
S +V + + P L + + L L+ F+ L+++++S N
Sbjct: 10 SNRVFLCQESKV-TEIPSDLP--RNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDV 66
Query: 301 LGGQLSRNLGKLCNLRTMILSR-NNISSEVSDFLDGLSECTNSILLEKLELRFNQFTGIL 359
L + L L + + + NN+ + L L+ L + +
Sbjct: 67 LEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPN------LQYLLISNTGIKHLP 120
Query: 360 PISLGSLKNLRHLVLWQNSFLGSIPP-SIGNLT-LLKELYLASNQMNGQKISDSYQHLKN 417
+ L + N + +I S L+ L+L N + Q+I +S +
Sbjct: 121 DVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGI--QEIHNSAFNGTQ 178
Query: 418 QTELRTLVLNKARISDTISDWFWQLSLTLDELDVAYNELRGRVPNSLGFNFPAKVDLSFN 477
EL N + + +D F S
Sbjct: 179 LDELNLSDNN--NLEELPNDVFHGAS---------------------------------- 202
Query: 478 NFEGRLLLWSFNVTKLYLRDNSFSGLIPNDIGQNLPFLTDLGNLKQLITLVISNNNLSGE 537
L + L L NLK+L S NL +
Sbjct: 203 -----------GPVILDISRTRIHSLPSYG----------LENLKKLRAR--STYNLK-K 238
Query: 538 IPLLFSNISFLYILDMSNNS 557
+P + L ++ S
Sbjct: 239 LPT-LEKLVALMEASLTYPS 257
|
| >4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350 | Back alignment and structure |
|---|
Score = 58.3 bits (141), Expect = 2e-09
Identities = 45/278 (16%), Positives = 89/278 (32%), Gaps = 38/278 (13%)
Query: 313 CNLRTMILSRNNISSEVSDFLDGLSECTNSILLEKLELRFNQFTGILPISLGSLKNLRHL 372
C+ R + + ++ SD +L + I + +L +
Sbjct: 9 CSNRVFLCQESKVTEIPSDLPRNA---------IELRFVLTKLRVIQKGAFSGFGDLEKI 59
Query: 373 VLWQNSFLGSIPPSI-GNLTLLKELYLA-SNQMNGQKISDSYQHLKNQTELRTLVLNKAR 430
+ QN L I + NL L E+ + +N + I+ + +N L+ L+++
Sbjct: 60 EISQNDVLEVIEADVFSNLPKLHEIRIEKANNL--LYINP--EAFQNLPNLQYLLISNTG 115
Query: 431 ISDTISDWFWQLSLTLDELDVAYNELRGRVPNSLGFNFPAK---VDLSFNNFEGRLLLWS 487
I + D SL LD+ N + + + + L+ N + + +
Sbjct: 116 IK-HLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQ-EIHNSA 173
Query: 488 FNVTKL----YLRDNSFSGLIPNDIGQNLPFLTDLGNLKQLITLVISNNNLSGEIPLLFS 543
FN T+L +N+ +PND+ + L IS +
Sbjct: 174 FNGTQLDELNLSDNNNLEE-LPNDV---------FHGASGPVILDISRTRIHSLPSYGLE 223
Query: 544 NISFLYILDMSNNSLSGSTPESIGSLRTVKFLVLRNNY 581
N+ L N ++ L + L
Sbjct: 224 NLKKLRARSTYNL----KKLPTLEKLVALMEASLTYPS 257
|
| >4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350 | Back alignment and structure |
|---|
Score = 57.1 bits (138), Expect = 6e-09
Identities = 37/218 (16%), Positives = 65/218 (29%), Gaps = 20/218 (9%)
Query: 112 LKDLEYLDLSMNNFTGFQVPEFIGSLKELRYLNLSGSFFSGTIP-QTLGNLSNLLYLDLN 170
DLE +++S N+ + +L +L + + + I + NL NL YL ++
Sbjct: 53 FGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLIS 112
Query: 171 NFLDQSNQIDL---EWLSGLSSLVYFNLGGADLSKAGAYWLEVFNKLHS-FVELHLPNCN 226
N I V ++ D F L V L L
Sbjct: 113 N-----TGIKHLPDVHKIHSLQKVLLDIQ--DNINIHTIERNSFVGLSFESVILWLNKNG 165
Query: 227 LPSLP-LSFPSLNFASLQVLDLSNNDFNSTTPHWLFNITSLLCLDLGSNDLQGDIPDGFA 285
+ + +F ++ NN+ + + LD+ + G
Sbjct: 166 IQEIHNSAFNGTQ--LDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSYGLE 223
Query: 286 SLNSLQELDLSGNSFLGGQLSRNLGKLCNLRTMILSRN 323
+L L+ L L KL L L+
Sbjct: 224 NLKKLRARSTYNLKKLP-----TLEKLVALMEASLTYP 256
|
| >4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350 | Back alignment and structure |
|---|
Score = 47.9 bits (114), Expect = 5e-06
Identities = 49/262 (18%), Positives = 82/262 (31%), Gaps = 46/262 (17%)
Query: 104 EISPSLLQ-LKDLEYLDLSMNNFTGFQVPEFIGSLKELRYLNLSGSFFSGTIPQTL--GN 160
I+P Q L +L+YL +S I SL+ L++ + TI + G
Sbjct: 94 YINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQ-KVLLDIQDNINIHTIERNSFVGL 152
Query: 161 LSNLLYLDLNNFLDQSNQIDLEWLSGLSSLVYFNLGGADLSKAGAYWLEVFNKLHSFVEL 220
+ L LN N I + + FN
Sbjct: 153 SFESVILWLNK-----NGI-----QEIHN-------------------SAFNGTQLDELN 183
Query: 221 HLPNCNLPSLP-LSFPSLNFASLQVLDLSNNDFNSTTPHWLFNITSLLCLDLGSNDLQGD 279
N NL LP F + +LD+S +S + L N+ L +
Sbjct: 184 LSDNNNLEELPNDVFHGAS--GPVILDISRTRIHSLPSYGLENLKKLRARSTYNLK---K 238
Query: 280 IPDGFASLNSLQELDLSGNS----FLGG-QLSRNLGKLCNLRTMILSRNNISSEVSDFLD 334
+P L +L E L+ S F + L +CN + + ++
Sbjct: 239 LPT-LEKLVALMEASLTYPSHCCAFANWRRQISELHPICNKSILRQEVDYMTQA-RGQRS 296
Query: 335 GLSECTNSILLEKLELRFNQFT 356
L+E S ++ + +F
Sbjct: 297 SLAEDNESSYSRGFDMTYTEFD 318
|
| >4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197 | Back alignment and structure |
|---|
Score = 68.8 bits (169), Expect = 1e-13
Identities = 35/172 (20%), Positives = 70/172 (40%), Gaps = 19/172 (11%)
Query: 262 NITSLLCLDLGSNDLQGDIPDGFASLNSLQELDLSGNSFLGGQLSRNLGKLCNLRTMILS 321
+ L LG + +I A +NSL + L+ + L+ + N++ + ++
Sbjct: 21 TFKAYLNGLLGQSSTA-NIT--EAQMNSLTYITLANINV--TDLT-GIEYAHNIKDLTIN 74
Query: 322 RNNISSEVSDFLDGLSECTNSILLEKLELRFNQFTGILPISLGSLKNLRHLVLWQNSFLG 381
+ ++ + +S +N LE+L + T +L L +L L + ++
Sbjct: 75 NIHATN-----YNPISGLSN---LERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDD 126
Query: 382 SIPPSIGNLTLLKELYLASNQMNGQKISDSYQHLKNQTELRTLVLNKARISD 433
SI I L + + L+ N I+D LK EL++L + + D
Sbjct: 127 SILTKINTLPKVNSIDLSYN----GAITD-IMPLKTLPELKSLNIQFDGVHD 173
|
| >4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197 | Back alignment and structure |
|---|
Score = 66.9 bits (164), Expect = 6e-13
Identities = 30/198 (15%), Positives = 71/198 (35%), Gaps = 39/198 (19%)
Query: 233 SFPSLNFASLQVLDLSNNDFNSTTPHWLFNITSLLCLDLGSNDLQGDIPDGFASLNSLQE 292
+ P F + L + + T + ++T + L + ++ D+ G +++++
Sbjct: 16 NIPDSTFKAYLNGLLGQSSTANITEAQMNSLTYI---TLANINVT-DL-TGIEYAHNIKD 70
Query: 293 LDLSGNSFLGGQLS--RNLGKLCNLRTMILSRNNISSEVSDFLDGLSECTNSILLEKLEL 350
L ++ + + L NL + + +++S+ L GL+ L L++
Sbjct: 71 LTINNI-----HATNYNPISGLSNLERLRIMGKDVTSDKIPNLSGLTS------LTLLDI 119
Query: 351 RFNQFTGILPISLGSLKNLRHLVLWQNSFLGSIPP---------------------SIGN 389
+ + + +L + + L N + I P I +
Sbjct: 120 SHSAHDDSILTKINTLPKVNSIDLSYNGAITDIMPLKTLPELKSLNIQFDGVHDYRGIED 179
Query: 390 LTLLKELYLASNQMNGQK 407
L +LY S + G+K
Sbjct: 180 FPKLNQLYAFSQTIGGKK 197
|
| >4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197 | Back alignment and structure |
|---|
Score = 65.0 bits (159), Expect = 3e-12
Identities = 35/200 (17%), Positives = 68/200 (34%), Gaps = 25/200 (12%)
Query: 160 NLSNLLYLDLNNFLDQSNQIDLEWLSGLSSLVYFNLGGADLSKAGAYWLEVFNKLHSFVE 219
L L + + ++SL Y L +++ L H+ +
Sbjct: 21 TFKAYLNGLLGQ-----SSTANITEAQMNSLTYITLANINVTD-----LTGIEYAHNIKD 70
Query: 220 LHLPNCNLPSL-PLSFPSLNFASLQVLDLSNNDFNSTTPHWLFNITSLLCLDLGSNDLQG 278
L + N + + P+S ++L+ L + D S L +TSL LD+ +
Sbjct: 71 LTINNIHATNYNPIS----GLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDD 126
Query: 279 DIPDGFASLNSLQELDLSGNSFLGGQLSRNLGKLCNLRTMILSRNNISSEVSDFLDGLSE 338
I +L + +DLS N + L L L+++ + + + G+ +
Sbjct: 127 SILTKINTLPKVNSIDLSYNGAITDI--MPLKTLPELKSLNIQFDGVHD-----YRGIED 179
Query: 339 CTNSILLEKLELRFNQFTGI 358
L +L G
Sbjct: 180 FPK---LNQLYAFSQTIGGK 196
|
| >4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197 | Back alignment and structure |
|---|
Score = 58.4 bits (142), Expect = 4e-10
Identities = 33/223 (14%), Positives = 66/223 (29%), Gaps = 67/223 (30%)
Query: 108 SLLQLKDLEYLDLSMNNFTGFQVPEFIGSLKELRYLNLSGSFFSGTIPQTLGNLSNLLYL 167
+ Q+ L Y+ L+ N T I ++ L ++ + P + LSNL L
Sbjct: 39 TEAQMNSLTYITLANINVTDL---TGIEYAHNIKDLTINNIHATNYNP--ISGLSNLERL 93
Query: 168 DLNNFLDQSNQIDLEWLSGLSSLVYFNLGGADLSKAGAYWLEVFNKLHSFVELHLPNCNL 227
+ + + + LS L
Sbjct: 94 RIMG-----KDVTSDKIPNLSGLT------------------------------------ 112
Query: 228 PSLPLSFPSLNFASLQVLDLSNNDFNSTTPHWLFNITSLLCLDLGSNDLQGDIPDGFASL 287
SL +LD+S++ + + + + + +DL N DI +L
Sbjct: 113 -------------SLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDI-MPLKTL 158
Query: 288 NSLQELDLSGNSFLGGQLS--RNLGKLCNLRTMILSRNNISSE 328
L+ L++ + + R + L + I +
Sbjct: 159 PELKSLNIQFD-----GVHDYRGIEDFPKLNQLYAFSQTIGGK 196
|
| >4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197 | Back alignment and structure |
|---|
Score = 52.7 bits (127), Expect = 5e-08
Identities = 26/216 (12%), Positives = 65/216 (30%), Gaps = 42/216 (19%)
Query: 345 LEKLELRFNQFTGILPISLGSLKNLRHLVLWQNSFLGSIPPSIGNLTLLKELYLASNQMN 404
+ + I+ + +L ++ L + + + I +K+L + +
Sbjct: 22 FKAYLNGLLGQSSTANITEAQMNSLTYITLANIN-VTDLTG-IEYAHNIKDLTINNIH-- 77
Query: 405 GQKISDSYQHLKNQTELRTLVLNKARISDTISDWFWQLSLTLDELDVAYNELRGRVPNSL 464
++ Y + + L L + ++ L+ +L LD++++ + +
Sbjct: 78 ---ATN-YNPISGLSNLERLRIMGKDVTSDKIPNLSGLT-SLTLLDISHSAHDDSILTKI 132
Query: 465 GFNFPAKVDLSFNNFEGRLLLWSFNVTKLYLRDNSFSGLIPNDIGQNLPFLTDLGNLKQL 524
P V + L N I L L +L
Sbjct: 133 N-TLP-------------------KVNSIDLSYNGAITDIMP-----------LKTLPEL 161
Query: 525 ITLVISNNNLSGEIPLLFSNISFLYILDMSNNSLSG 560
+L I + + + + L L + ++ G
Sbjct: 162 KSLNIQFDGVHDYRGI--EDFPKLNQLYAFSQTIGG 195
|
| >4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197 | Back alignment and structure |
|---|
Score = 47.6 bits (114), Expect = 2e-06
Identities = 18/92 (19%), Positives = 33/92 (35%), Gaps = 8/92 (8%)
Query: 107 PSLLQLKDLEYLDLSMNNFTGFQVPEFIGSLKELRYLNLSGSFFSGTIPQTLGNLSNLLY 166
P+L L L LD+S + + I +L ++ ++LS + I L L L
Sbjct: 106 PNLSGLTSLTLLDISHSAHDDSIL-TKINTLPKVNSIDLSYNGAITDI-MPLKTLPELKS 163
Query: 167 LDLNNFLDQSNQI-DLEWLSGLSSLVYFNLGG 197
L++ + + D + L
Sbjct: 164 LNIQF-----DGVHDYRGIEDFPKLNQLYAFS 190
|
| >4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197 | Back alignment and structure |
|---|
Score = 43.8 bits (104), Expect = 5e-05
Identities = 18/92 (19%), Positives = 36/92 (39%), Gaps = 12/92 (13%)
Query: 489 NVTKLYLRDNSFSGLIPNDIGQNLPFLTDLGNLKQLITLVISNNNLSGEIPLLFSNISFL 548
N+ L + + + P + L L L I +++ + S ++ L
Sbjct: 67 NIKDLTINNIHATNYNP------------ISGLSNLERLRIMGKDVTSDKIPNLSGLTSL 114
Query: 549 YILDMSNNSLSGSTPESIGSLRTVKFLVLRNN 580
+LD+S+++ S I +L V + L N
Sbjct: 115 TLLDISHSAHDDSILTKINTLPKVNSIDLSYN 146
|
| >4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197 | Back alignment and structure |
|---|
Score = 42.6 bits (101), Expect = 1e-04
Identities = 14/106 (13%), Positives = 39/106 (36%), Gaps = 14/106 (13%)
Query: 489 NVTKLYLRDNSFSGLIPNDIGQNLPFLTDLGNLKQLITLVISNNNLSGEIPLLFSNISFL 548
++T + L + + + L T + + L I+N + + P+ S +S L
Sbjct: 45 SLTYITLANINVTDL------------TGIEYAHNIKDLTINNIHATNYNPI--SGLSNL 90
Query: 549 YILDMSNNSLSGSTPESIGSLRTVKFLVLRNNYLSGKLPLSLKNCT 594
L + ++ ++ L ++ L + ++ + +
Sbjct: 91 ERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLP 136
|
| >4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197 | Back alignment and structure |
|---|
Score = 40.7 bits (96), Expect = 5e-04
Identities = 27/218 (12%), Positives = 69/218 (31%), Gaps = 42/218 (19%)
Query: 367 KNLRHLVLWQNSFLGSIPPSIGNLTLLKELYLASNQMNGQKISDSYQHLKNQTELRTLVL 426
+ + + + + L + LA+ ++D ++ ++ L +
Sbjct: 20 STFKAYLNGLLGQSSTANITEAQMNSLTYITLANIN-----VTDL-TGIEYAHNIKDLTI 73
Query: 427 NKARISDTISDWFWQLSLTLDELDVAYNELRGRVPNSLGFNFPAKVDLSFNNFEGRLLLW 486
N ++ LS L+ L + ++ +L L+
Sbjct: 74 NNIHATNYNP--ISGLS-NLERLRIMGKDVTSDKIPNLS-------GLT----------- 112
Query: 487 SFNVTKLYLRDNSFSGLIPNDIGQNLPFLTDLGNLKQLITLVISNNNLSGEIPLLFSNIS 546
++T L + ++ I LT + L ++ ++ +S N +I L +
Sbjct: 113 --SLTLLDISHSAHDDSI----------LTKINTLPKVNSIDLSYNGAITDIMPL-KTLP 159
Query: 547 FLYILDMSNNSLSGSTPESIGSLRTVKFLVLRNNYLSG 584
L L++ + + I + L + + G
Sbjct: 160 ELKSLNIQFDGVHDYRG--IEDFPKLNQLYAFSQTIGG 195
|
| >2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276 | Back alignment and structure |
|---|
Score = 70.0 bits (172), Expect = 2e-13
Identities = 60/266 (22%), Positives = 93/266 (34%), Gaps = 62/266 (23%)
Query: 114 DLEYLDLSMNNFTGFQVPEFIGSLKELRYLNLSGSFFSGTIPQTLGNLSNLLYLDLNNFL 173
+ LDLS N F S EL+ L+LS +LS+L L L
Sbjct: 29 STKNLDLSFNPLRHLGSYSF-FSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTG-- 85
Query: 174 DQSNQIDLEWLSGLSSLVYFNLGGADLSKAGAYWLEVFNKLHSFVELHLPNCNLPSLPLS 233
N + L+ F+ L S +L NL SL +
Sbjct: 86 ---NP-----IQSLAL-------------------GAFSGLSSLQKLVAVETNLASLE-N 117
Query: 234 FPSLNFASLQVLDLSNNDFNSTTPHWLF-NITSLLCLDLGSNDLQGDIPDG-FASLNSLQ 291
FP + +L+ L++++N S F N+T+L LDL SN +Q I L+ +
Sbjct: 118 FPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQ-SIYCTDLRVLHQMP 176
Query: 292 ELDLSGNSFLGGQLSRNLGKLCNLRTMILSRNNISSEVSDFLDGLSECTNSILLEKLELR 351
L+LS + LS N ++ + L++L L
Sbjct: 177 LLNLSLD---------------------LSLNPMNFIQPGAFKEIR-------LKELALD 208
Query: 352 FNQFTGILPISLGSLKNLRHLVLWQN 377
NQ + L +L+ + L N
Sbjct: 209 TNQLKSVPDGIFDRLTSLQKIWLHTN 234
|
| >2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276 | Back alignment and structure |
|---|
Score = 68.5 bits (168), Expect = 6e-13
Identities = 54/201 (26%), Positives = 79/201 (39%), Gaps = 22/201 (10%)
Query: 264 TSLLCLDLGSNDLQGDIPDGFASLNSLQELDLSGNSFLGGQLSR----NLGKLCNLRTMI 319
S LDL N L+ F S LQ LDLS ++ L +L T+I
Sbjct: 28 FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRC-----EIQTIEDGAYQSLSHLSTLI 82
Query: 320 LSRNNISSEVSDFLDGLSECTNSILLEKLELRFNQFTGILPISLGSLKNLRHLVLWQNSF 379
L+ N I S GLS L+KL + +G LK L+ L + N
Sbjct: 83 LTGNPIQSLALGAFSGLSS------LQKLVAVETNLASLENFPIGHLKTLKELNVAHNLI 136
Query: 380 LGSIPPSI-GNLTLLKELYLASNQMNGQKIS-DSYQHLKN-QTELRTLVLNKARISDTIS 436
P NLT L+ L L+SN++ Q I + L +L L+ ++
Sbjct: 137 QSFKLPEYFSNLTNLEHLDLSSNKI--QSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQP 194
Query: 437 DWFWQLSLTLDELDVAYNELR 457
F ++ L EL + N+L+
Sbjct: 195 GAFKEIRLK--ELALDTNQLK 213
|
| >2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276 | Back alignment and structure |
|---|
Score = 65.8 bits (161), Expect = 5e-12
Identities = 46/192 (23%), Positives = 71/192 (36%), Gaps = 13/192 (6%)
Query: 112 LKDLEYLDLSMNNFTGFQVPEFIGSLKELRYLNLSGSFFSGTIPQTLGNLSNLLYLDLNN 171
+L+ LDLS + + L L L L+G+ LS+L L
Sbjct: 51 FPELQVLDLSRCEIQTIEDGAYQS-LSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVE 109
Query: 172 FLDQSNQIDLEWLSGLSSLVYFNLGGADLSKAGAYWLEVFNKLHSFVELHLPNCNLPSLP 231
++ + L +L N+ + E F+ L + L L + + S+
Sbjct: 110 --TNLASLENFPIGHLKTLKELNVAHNLIQSFKLP--EYFSNLTNLEHLDLSSNKIQSIY 165
Query: 232 L----SFPSLNFASLQVLDLSNNDFNSTTPHWLFNITSLLCLDLGSNDLQGDIPDG-FAS 286
+ +L LDLS N N F L L L +N L+ +PDG F
Sbjct: 166 CTDLRVLHQMPLLNLS-LDLSLNPMNFI-QPGAFKEIRLKELALDTNQLK-SVPDGIFDR 222
Query: 287 LNSLQELDLSGN 298
L SLQ++ L N
Sbjct: 223 LTSLQKIWLHTN 234
|
| >2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276 | Back alignment and structure |
|---|
Score = 57.7 bits (140), Expect = 2e-09
Identities = 50/238 (21%), Positives = 89/238 (37%), Gaps = 35/238 (14%)
Query: 345 LEKLELRFNQFTGILPISLGSLKNLRHLVLWQNSFLGSIPPSI-GNLTLLKELYLASNQM 403
+ L+L FN + S S L+ L L + + +I +L+ L L L N +
Sbjct: 30 TKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCE-IQTIEDGAYQSLSHLSTLILTGNPI 88
Query: 404 NGQKI-SDSYQHLKNQTELRTLVLNKARISDTISDWFWQLSLTLDELDVAYNELRGRVPN 462
Q + ++ L + L+ LV + ++ + L TL EL+VA+N ++
Sbjct: 89 --QSLALGAFSGL---SSLQKLVAVETNLASLENFPIGHLK-TLKELNVAHNLIQ-SFKL 141
Query: 463 SLGFNFPAKVDLSFNNFEGRLLLWSFNVTKLYLRDNSFSGLIPNDIGQNLPFLTDLGNLK 522
F+ +L+ N+ L L N I + L + L
Sbjct: 142 PEYFS-----NLT-------------NLEHLDLSSNKIQS-IYCTDLRVLHQMPLL---- 178
Query: 523 QLITLVISNNNLSGEIPLLFSNISFLYILDMSNNSLSGSTPESIGSLRTVKFLVLRNN 580
++L +S N ++ P F I L L + N L L +++ + L N
Sbjct: 179 -NLSLDLSLNPMNFIQPGAFKEIR-LKELALDTNQLKSVPDGIFDRLTSLQKIWLHTN 234
|
| >2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276 | Back alignment and structure |
|---|
Score = 53.4 bits (129), Expect = 6e-08
Identities = 53/270 (19%), Positives = 88/270 (32%), Gaps = 66/270 (24%)
Query: 289 SLQELDLSGNSFLGGQLSRN-LGKLCNLRTMILSRNNISSEVSDFLDGLSECTNSILLEK 347
S + LDLS N L L+ + LSR I + LS L
Sbjct: 29 STKNLDLSFNPL--RHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSH------LST 80
Query: 348 LELRFNQFTGILPISLGSLKNLRHLVLWQNSFLGSIPPSI-GNLTLLKELYLASNQMNGQ 406
L L N + + L +L+ LV + + L S+ G+L LKEL +A N +
Sbjct: 81 LILTGNPIQSLALGAFSGLSSLQKLVAVETN-LASLENFPIGHLKTLKELNVAHNLIQSF 139
Query: 407 KISDSYQHLKNQTELRTLVLNKARISDTISDWFWQLSLTLDELDVAYNELRGRVPNSLGF 466
K+ + + +L T L L L+ +I L ++ + L
Sbjct: 140 KLPEYFSNL---TNLEHLDLSSNKIQSIYCTDLRVLH----QMPLLNLSL---------- 182
Query: 467 NFPAKVDLSFNNFEGRLLLWSFNVTKLYLRDNSFSGLIPNDIGQNLPFLTDLGNLKQLIT 526
DLS N +++ +F + +L
Sbjct: 183 ------DLSLNPMN-------------FIQPGAFKEI-------------------RLKE 204
Query: 527 LVISNNNLSGEIPLLFSNISFLYILDMSNN 556
L + N L +F ++ L + + N
Sbjct: 205 LALDTNQLKSVPDGIFDRLTSLQKIWLHTN 234
|
| >2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276 | Back alignment and structure |
|---|
Score = 44.2 bits (105), Expect = 5e-05
Identities = 43/158 (27%), Positives = 67/158 (42%), Gaps = 17/158 (10%)
Query: 111 QLKDLEYLDLSMNNFTGFQVPEFIGSLKELRYLNLSG-SFFSGTIPQTLGNLSNLLYLDL 169
L L+ L N + G LK L+ LN++ S +P+ NL+NL +LDL
Sbjct: 98 GLSSLQKLVAVETNLASLENFPI-GHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDL 156
Query: 170 NNFLDQSNQI---DLEWLSGLSSLVYFNLGGADLSKAGAYWLE--VFNKLHSFVELHLPN 224
++ N+I L L + NL DLS +++ F ++ EL L
Sbjct: 157 SS-----NKIQSIYCTDLRVLHQMPLLNLS-LDLSLNPMNFIQPGAFKEIR-LKELALDT 209
Query: 225 CNLPSLPL-SFPSLNFASLQVLDLSNNDFNSTTPHWLF 261
L S+P F L SLQ + L N ++ + P +
Sbjct: 210 NQLKSVPDGIFDRL--TSLQKIWLHTNPWDCSCPRIDY 245
|
| >1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291 | Back alignment and structure |
|---|
Score = 68.9 bits (169), Expect = 5e-13
Identities = 55/271 (20%), Positives = 91/271 (33%), Gaps = 40/271 (14%)
Query: 104 EISPSLLQLKDLEYLDLSMNNFTGFQVPEFIGSLKELRYLNLSGSFFSGTIPQTLGNLSN 163
+I + +L + T L + + + S ++ Q + L N
Sbjct: 16 QIFS-DDAFAETIKDNLKKKSVTD---AVTQNELNSIDQIIANNSDIK-SV-QGIQYLPN 69
Query: 164 LLYLDLNNFLDQSNQI-DLEWLSGLSSLVYFNLGGADLSKAGAYWLEVFNKLHSFVELHL 222
+ L LN N++ D++ L+ L +L + L + L L L L
Sbjct: 70 VTKLFLNG-----NKLTDIKPLANLKNLGWLFLDENKVKD-----LSSLKDLKKLKSLSL 119
Query: 223 PNCNLPSL-PLSFPSLNFASLQVLDLSNNDFNSTTPHWLFNITSLLCLDLGSNDLQGDIP 281
+ + + L + L+ L L NN T L +T L L L N + DI
Sbjct: 120 EHNGISDINGLV----HLPQLESLYLGNNKITDITV--LSRLTKLDTLSLEDNQIS-DIV 172
Query: 282 DGFASLNSLQELDLSGNSFLGGQLS--RNLGKLCNLRTMILSRNNISSEVSDFLDGLSEC 339
A L LQ L LS N +S R L L NL + L ++ + L
Sbjct: 173 -PLAGLTKLQNLYLSKN-----HISDLRALAGLKNLDVLELFSQECLNKPINHQSNL--- 223
Query: 340 TNSILLEKLELRFNQFTGILPIS-LGSLKNL 369
++ ++ IS G +
Sbjct: 224 ---VVPNTVKNTDGSLVTPEIISDDGDYEKP 251
|
| >1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291 | Back alignment and structure |
|---|
Score = 68.5 bits (168), Expect = 7e-13
Identities = 62/340 (18%), Positives = 103/340 (30%), Gaps = 80/340 (23%)
Query: 234 FPSLNFASLQVLDLSNNDFNSTTPHWLFNITSLLCLDLGSNDLQGDIPDGFASLNSLQEL 293
F FA +L + S+ + ++D++ + G L ++ +L
Sbjct: 18 FSDDAFAETIKDNLKKKSVTDAVT--QNELNSIDQIIANNSDIK-SV-QGIQYLPNVTKL 73
Query: 294 DLSGNSFLGGQLSR--NLGKLCNLRTMILSRNNISSEVSDFLDGLSECTNSILLEKLELR 351
L+GN +L+ L L NL + L N + L L + L+ L L
Sbjct: 74 FLNGN-----KLTDIKPLANLKNLGWLFLDENKVKD-----LSSLKDLKK---LKSLSLE 120
Query: 352 FNQFTGILPISLGSLKNLRHLVLWQNSFLGSIPPSIGNLTLLKELYLASNQMNGQKISDS 411
N + I + L L L L N + I + LT L L L NQ ISD
Sbjct: 121 HNGISDINGLV--HLPQLESLYLGNNK-ITDITV-LSRLTKLDTLSLEDNQ-----ISD- 170
Query: 412 YQHLKNQTELRTLVLNKARISDTISDWFWQLSLTLDELDVAYNELRGRVPNSLGFNFPAK 471
L T+L+ L ++ N +
Sbjct: 171 IVPLAGLTKLQ-------------------------NLYLSKNHIS-------------- 191
Query: 472 VDLSFNNFEGRLLLWSFNVTKLYLRDNSFSGLIPNDIGQNLPFLTDLGNLKQLITLVISN 531
DL L N+ L L N + L +K +++
Sbjct: 192 -DLRA-------LAGLKNLDVLELFSQE----CLNKPINHQSNLVVPNTVKNTDGSLVTP 239
Query: 532 NNLSGEIPLLFSNISFLYILDMSNNSLSGSTPESIGSLRT 571
+S + N+ + + S P +IG +
Sbjct: 240 EIISDDGDYEKPNVKWHLPEFTNEVSFIFYQPVTIGKAKA 279
|
| >1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291 | Back alignment and structure |
|---|
Score = 64.3 bits (157), Expect = 2e-11
Identities = 64/316 (20%), Positives = 116/316 (36%), Gaps = 63/316 (19%)
Query: 283 GFASLNSLQELDLSGNSFLGGQLSRNLGKLCNLRTMILSRNNISSEVSDFLDGLSECTNS 342
+ + +L S + +L ++ +I + ++I S + G+ N
Sbjct: 19 SDDAFAETIKDNLKKKSVTD---AVTQNELNSIDQIIANNSDIKS-----VQGIQYLPN- 69
Query: 343 ILLEKLELRFNQFTGILPISLGSLKNLRHLVLWQNSFLGSIPPSIGNLTLLKELYLASNQ 402
+ KL L N+ T I P++ +LKNL L L +N + + + +L LK L L N
Sbjct: 70 --VTKLFLNGNKLTDIKPLA--NLKNLGWLFLDENK-VKDLSS-LKDLKKLKSLSLEHNG 123
Query: 403 MNGQKISDSYQHLKNQTELRTLVLNKARISDTISDWFWQLSLTLDELDVAYNELRGRVPN 462
ISD L + +L +L L +I+D I+ +L+ LD L + N++
Sbjct: 124 -----ISD-INGLVHLPQLESLYLGNNKITD-ITV-LSRLT-KLDTLSLEDNQIS----- 169
Query: 463 SLGFNFPAKVDLSFNNFEGRLLLWSFNVTKLYLRDNSFSGLIPNDIGQNLPFLTDLGNLK 522
D+ L + LYL N ++ L L LK
Sbjct: 170 ----------DIVP-------LAGLTKLQNLYLSKN------------HISDLRALAGLK 200
Query: 523 QLITLVISNNNLSGEIPLLFSNISFLYILDMSNNSLSGSTPESIGSLRTVKFLVLRNNYL 582
L L + + + SN+ + ++ SL TPE I + ++ +
Sbjct: 201 NLDVLELFSQECLNKPINHQSNLVVPNTVKNTDGSL--VTPEIISDDGDYEKPNVKWHLP 258
Query: 583 SGKLPLSLKNCTFQES 598
+ + F +
Sbjct: 259 EFT---NEVSFIFYQP 271
|
| >1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263 | Back alignment and structure |
|---|
Score = 66.6 bits (163), Expect = 2e-12
Identities = 56/312 (17%), Positives = 98/312 (31%), Gaps = 60/312 (19%)
Query: 173 LDQSNQI-DLEWLSGLSSLVYFNLGGADLSKAGAYWLEVFNKLHSFVELHLPNCNLPSLP 231
+ + I + GL++ V NLG + V
Sbjct: 3 IQRPTPINQVFPDPGLANAVKQNLGK--------------QSVTDLVSQK---------- 38
Query: 232 LSFPSLNFASLQVLDLSNNDFNSTTPHWLFNITSLLCLDLGSNDLQGDIPDGFASLNSLQ 291
+ +Q + N++ S + T+L L L N + D+ L L+
Sbjct: 39 ------ELSGVQNFNGDNSNIQSLAG--MQFFTNLKELHLSHNQIS-DL-SPLKDLTKLE 88
Query: 292 ELDLSGNSFLGGQLSR-NLGKLCNLRTMILSRNNISSEVSDFLDGLSECTNSILLEKLEL 350
EL ++ N +L N L + L N + D L N LE L +
Sbjct: 89 ELSVNRN-----RLKNLNGIPSACLSRLFLDNNELRD-----TDSLIHLKN---LEILSI 135
Query: 351 RFNQFTGILPISLGSLKNLRHLVLWQNSFLGSIPPSIGNLTLLKELYLASNQMNGQKISD 410
R N+ I+ + L L L L N + + + L + + L + +
Sbjct: 136 RNNKLKSIVMLG--FLSKLEVLDLHGNE-ITNTGG-LTRLKKVNWIDLTGQK-----CVN 186
Query: 411 SYQHLKNQTELRTLVLNKARISDTISDWFWQLSLTLDELDVAYNELRGRVPNSLGFNFPA 470
+ +K Q EL K IS ++ + + V + S F+
Sbjct: 187 --EPVKYQPELYITNTVKDPDGRWISPYYISNGGSYVDGCVLWELPVYTDEVSYKFSEYI 244
Query: 471 KVDLSFNNFEGR 482
V + F+G
Sbjct: 245 NVGETEAIFDGT 256
|
| >1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263 | Back alignment and structure |
|---|
Score = 54.3 bits (131), Expect = 3e-08
Identities = 50/289 (17%), Positives = 93/289 (32%), Gaps = 55/289 (19%)
Query: 285 ASLNSLQELDLSGNSFLGGQLSR--NLGKLCNLRTMILSRNNISSEVSDFLDGLSECTNS 342
L + + +L ++ + +L ++ +NI S L G+ TN
Sbjct: 16 PGLANAVKQNLGKQ-----SVTDLVSQKELSGVQNFNGDNSNIQS-----LAGMQFFTN- 64
Query: 343 ILLEKLELRFNQFTGILPISLGSLKNLRHLVLWQNSFLGSIPPSIGNLTLLKELYLASNQ 402
L++L L NQ + + P+ L L L + +N L ++ L L+L +N+
Sbjct: 65 --LKELHLSHNQISDLSPLK--DLTKLEELSVNRNR-LKNLNG--IPSACLSRLFLDNNE 117
Query: 403 MNGQKISDSYQHLKNQTELRTLVLNKARISDTISDWFWQLSLTLDELDVAYNELRGRVPN 462
+ D L + L L + ++ I LS L+ LD+ NE+
Sbjct: 118 -----LRD-TDSLIHLKNLEILSIRNNKLKS-IVM-LGFLS-KLEVLDLHGNEIT----- 163
Query: 463 SLGFNFPAKVDLSFNNFEGRLLLWSFNVTKLYLRDNSFSGLIPNDIGQNLPFLTDLGNLK 522
+ L V + L N+ + P L +K
Sbjct: 164 ----------NTGG-------LTRLKKVNWIDLTGQK----CVNEPVKYQPELYITNTVK 202
Query: 523 QLITLVISNNNLSGEIPLLFSNISFLYILDMSNNSLSGSTPESIGSLRT 571
IS +S + + + + S S ++G
Sbjct: 203 DPDGRWISPYYISNGGSYVDGCVLWELPVYTDEVSYKFSEYINVGETEA 251
|
| >1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263 | Back alignment and structure |
|---|
Score = 50.0 bits (120), Expect = 8e-07
Identities = 38/278 (13%), Positives = 82/278 (29%), Gaps = 58/278 (20%)
Query: 308 NLGKLCNLRTMILSRNNISSEVSDFLDGLSECTNSILLEKLELRFNQFTGILPISLGSLK 367
L N L + +++ L E + ++ + + +
Sbjct: 14 PDPGLANAVKQNLGKQSVTD-----LVSQKELSG---VQNFNGDNSNIQSLAGMQ--FFT 63
Query: 368 NLRHLVLWQNSFLGSIPPSIGNLTLLKELYLASNQMNGQKISDSYQHLKNQTELRTLVLN 427
NL+ L L N + + P + +LT L+EL + N ++ + + + L L L+
Sbjct: 64 NLKELHLSHNQ-ISDLSP-LKDLTKLEELSVNRN-----RLKN-LNGIPSAC-LSRLFLD 114
Query: 428 KARISDTISDWFWQLSLTLDELDVAYNELRGRVPNSLGFNFPAKVDLSFNNFEGRLLLWS 487
+ DT S L L+ L + N+L+ + L +
Sbjct: 115 NNELRDTDS--LIHLK-NLEILSIRNNKLK---------------SIVM-------LGFL 149
Query: 488 FNVTKLYLRDNSFSGLIPNDIGQNLPFLTDLGNLKQLITLVISNNNLSGEIPLLFSNISF 547
+ L L N + L LK++ + ++ E +
Sbjct: 150 SKLEVLDLHGN------------EITNTGGLTRLKKVNWIDLTGQKCVNEPVKYQPELYI 197
Query: 548 LYILDMSNNSLSGSTPESIGSLRTVKFLVLRNNYLSGK 585
+ + +P I + + +
Sbjct: 198 TNTVKDPDGRW--ISPYYISNGGSYVDGCVLWELPVYT 233
|
| >1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263 | Back alignment and structure |
|---|
Score = 48.1 bits (115), Expect = 3e-06
Identities = 34/171 (19%), Positives = 62/171 (36%), Gaps = 22/171 (12%)
Query: 107 PSLLQLKDLEYLDLSMNNFTGFQVPEFIGSLKELRYLNLSGSFFSGTIPQTLGNLSNLLY 166
S +L ++ + +N + L+ L+LS + S P L +L+ L
Sbjct: 35 VSQKELSGVQNFNGDNSNIQSL---AGMQFFTNLKELHLSHNQISDLSP--LKDLTKLEE 89
Query: 167 LDLNNFLDQSNQI-DLEWLSGLSSLVYFNLGGADLSKAGAYWLEVFNKLHSFVELHLPNC 225
L +N N++ +L + L L +L + L + L + N
Sbjct: 90 LSVNR-----NRLKNLNGIPSA-CLSRLFLDNNELRD-----TDSLIHLKNLEILSIRNN 138
Query: 226 NLPSLPLSFPSLNFASLQVLDLSNNDFNSTTPHWLFNITSLLCLDLGSNDL 276
L S+ + L+VLDL N+ +T L + + +DL
Sbjct: 139 KLKSIV---MLGFLSKLEVLDLHGNEITNTGG--LTRLKKVNWIDLTGQKC 184
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 69.5 bits (169), Expect = 2e-12
Identities = 89/564 (15%), Positives = 169/564 (29%), Gaps = 169/564 (29%)
Query: 99 HELGGEISPSLLQLKDL--EYLDLSMNNFTGFQVPEFIGSL---KELRYLNLSGSFFSGT 153
H + E Q KD+ + D ++NF V + S+ +E+ ++ +S
Sbjct: 5 HHMDFETGEHQYQYKDILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMS------- 57
Query: 154 IPQTLGNLSNLLYLDLNN-------FLDQSNQIDLEWLSGLSSLVYFNLGGADLSKAGAY 206
+ L + L+ F+++ +I+ ++L +S + + +++
Sbjct: 58 -KDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFL--MSPIKTEQRQPSMMTRMYIE 114
Query: 207 WLE-VFNKLHSFVELHLP---------NCNLPSL-PLSFPSLN---------FASLQVLD 246
+ ++N F + ++ L L P ++ A L
Sbjct: 115 QRDRLYNDNQVFAKYNVSRLQPYLKLRQA-LLELRPAKNVLIDGVLGSGKTWVALDVCLS 173
Query: 247 ---LSNNDF--------NSTTPHWLFNITSLLCLDLGSNDLQG-----DIPDGFASL--- 287
DF N +P + + L + N +I S+
Sbjct: 174 YKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAE 233
Query: 288 -----------NSLQELDLSG-------NSFLGGQLSRNLGKLCNLRTMILSRNNISSEV 329
N L L L N+F NL C + ++ +R +V
Sbjct: 234 LRRLLKSKPYENCL--LVLLNVQNAKAWNAF-------NLS--C--KILLTTRF---KQV 277
Query: 330 SDFLDGLSEC---------------TNSILLEKLELRFN----QFTGILPISLGSL-KNL 369
+DFL + S+LL+ L+ R + P L + +++
Sbjct: 278 TDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESI 337
Query: 370 R-HLVLWQN-------SFLGSIPPSIGNLT--LLKELY--LASNQMN------------G 405
R L W N I S+ L ++++ L+ +
Sbjct: 338 RDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWF 397
Query: 406 QKISDSYQHLKNQTELRTLVLNKARISDTIS--DWFWQLSLTLDELDV-------AYNEL 456
I + N+ +L + K TIS + +L + L+ YN
Sbjct: 398 DVIKSDVMVVVNKLHKYSL-VEKQPKESTISIPSIYLELKVKLENEYALHRSIVDHYNIP 456
Query: 457 RGRVPNSLGFNFPAKVDLSFNNFEGRLL-------LWSFNVTKLYLRDNSF-------SG 502
+ + L P +D F + G L + ++L D F
Sbjct: 457 KTFDSDDLI---PPYLDQYFYSHIGHHLKNIEHPERMTL-FRMVFL-DFRFLEQKIRHDS 511
Query: 503 LIPNDIGQNLPFLTDLGNLKQLIT 526
N G L L L K I
Sbjct: 512 TAWNASGSILNTLQQLKFYKPYIC 535
|
| >2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220 | Back alignment and structure |
|---|
Score = 64.7 bits (158), Expect = 5e-12
Identities = 35/158 (22%), Positives = 59/158 (37%), Gaps = 21/158 (13%)
Query: 227 LPSLPLSFPSLNFASLQVLDLSNNDFNSTTPHWLFNITSLLCLDLGSNDLQGDIPDG-FA 285
L +P + P ++ + L N P L +DL +N + ++ F
Sbjct: 23 LTEIPTNLP----ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQIS-ELAPDAFQ 77
Query: 286 SLNSLQELDLSGNSFLGGQL----SRNLGKLCNLRTMILSRNNISSEVSDFLDGLSECTN 341
L SL L L GN ++ L +L+ ++L+ N I+ D L
Sbjct: 78 GLRSLNSLVLYGN-----KITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHN--- 129
Query: 342 SILLEKLELRFNQFTGILPISLGSLKNLRHLVLWQNSF 379
L L L N+ I + L+ ++ + L QN F
Sbjct: 130 ---LNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPF 164
|
| >2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220 | Back alignment and structure |
|---|
Score = 52.0 bits (125), Expect = 1e-07
Identities = 37/140 (26%), Positives = 53/140 (37%), Gaps = 16/140 (11%)
Query: 165 LYLDLNNFLDQSNQIDLEWLSGLSSLVYFNLGGADLSK--AGAYWLEVFNKLHSFVELHL 222
+ L+ N I S L +L +S+ F L S L L
Sbjct: 37 IRLEQNTI----KVIPPGAFSPYKKLRRIDLSNNQISELAPD-----AFQGLRSLNSLVL 87
Query: 223 PNCNLPSLPLS-FPSLNFASLQVLDLSNNDFNSTTPHWLF-NITSLLCLDLGSNDLQGDI 280
+ LP S F L SLQ+L L+ N N F ++ +L L L N LQ
Sbjct: 88 YGNKITELPKSLFEGL--FSLQLLLLNANKINCL-RVDAFQDLHNLNLLSLYDNKLQTIA 144
Query: 281 PDGFASLNSLQELDLSGNSF 300
F+ L ++Q + L+ N F
Sbjct: 145 KGTFSPLRAIQTMHLAQNPF 164
|
| >2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220 | Back alignment and structure |
|---|
Score = 43.9 bits (104), Expect = 5e-05
Identities = 28/114 (24%), Positives = 48/114 (42%), Gaps = 9/114 (7%)
Query: 346 EKLELRFNQFTGILPISLGSLKNLRHLVLWQNSFLGSIPPSI-GNLTLLKELYLASNQMN 404
++ L N I P + K LR + L N + + P L L L L N++
Sbjct: 35 TEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQ-ISELAPDAFQGLRSLNSLVLYGNKI- 92
Query: 405 GQKI-SDSYQHLKNQTELRTLVLNKARISDTISDWFWQLSLTLDELDVAYNELR 457
++ ++ L L+ L+LN +I+ D F L L+ L + N+L+
Sbjct: 93 -TELPKSLFEGL---FSLQLLLLNANKINCLRVDAFQDLH-NLNLLSLYDNKLQ 141
|
| >2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220 | Back alignment and structure |
|---|
Score = 40.4 bits (95), Expect = 7e-04
Identities = 23/110 (20%), Positives = 43/110 (39%), Gaps = 16/110 (14%)
Query: 489 NVTKLYLRDNSFSGLIPNDIGQNLPFLT--DLGN-------------LKQLITLVISNNN 533
+T++ L N+ + P L DL N L+ L +LV+ N
Sbjct: 33 TITEIRLEQNTIKVIPPGAF-SPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNK 91
Query: 534 LSGEIPLLFSNISFLYILDMSNNSLSGSTPESIGSLRTVKFLVLRNNYLS 583
++ LF + L +L ++ N ++ ++ L + L L +N L
Sbjct: 92 ITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQ 141
|
| >3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A Length = 272 | Back alignment and structure |
|---|
Score = 62.7 bits (153), Expect = 5e-11
Identities = 46/184 (25%), Positives = 74/184 (40%), Gaps = 22/184 (11%)
Query: 224 NCNLPSLPLSFPSLNFASLQVLDLSNNDFNSTTPHWLFNITSLLCLDLGSNDLQGDIPDG 283
+ P FP FA +L + S+ + ++D++ G
Sbjct: 4 TVSTPIKQ-IFPDDAFAETIKANLKKKSVTDAVT--QNELNSIDQIIANNSDIKS--VQG 58
Query: 284 FASLNSLQELDLSGNSFLGGQLSRNLG---KLCNLRTMILSRNNISSEVSDFLDGLSECT 340
L +++ L L GN +L + +L NL +IL+ N + S + D L+
Sbjct: 59 IQYLPNVRYLALGGN-----KLHD-ISALKELTNLTYLILTGNQLQSLPNGVFDKLTN-- 110
Query: 341 NSILLEKLELRFNQFTGILPISLGSLKNLRHLVLWQNSFLGSIPPSI-GNLTLLKELYLA 399
L++L L NQ + L NL +L L N L S+P + LT L EL L+
Sbjct: 111 ----LKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQ-LQSLPKGVFDKLTNLTELDLS 165
Query: 400 SNQM 403
NQ+
Sbjct: 166 YNQL 169
|
| >3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A Length = 272 | Back alignment and structure |
|---|
Score = 56.9 bits (138), Expect = 4e-09
Identities = 50/187 (26%), Positives = 72/187 (38%), Gaps = 20/187 (10%)
Query: 219 ELHLPNCNLPSLPLSFPSLNFASLQVLDLSNNDFNSTTPHWLFNI-TSLLCLDLGSNDLQ 277
+ +L ++ S+ + +N+D S ++ L LG N L
Sbjct: 23 KANLKKKSVTDAV---TQNELNSIDQIIANNSDIKSVQG---IQYLPNVRYLALGGNKLH 76
Query: 278 GDIPDGFASLNSLQELDLSGNSFLGGQLSRNL-GKLCNLRTMILSRNNISSEVSDFLDGL 336
DI L +L L L+GN L + KL NL+ ++L N + S D L
Sbjct: 77 -DIS-ALKELTNLTYLILTGNQL--QSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKL 132
Query: 337 SECTNSILLEKLELRFNQFTGILPISLGSLKNLRHLVLWQNSFLGSIPPSI-GNLTLLKE 395
+ L L L NQ + L NL L L N L S+P + LT LK+
Sbjct: 133 TN------LTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQ-LQSLPEGVFDKLTQLKD 185
Query: 396 LYLASNQ 402
L L NQ
Sbjct: 186 LRLYQNQ 192
|
| >2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239 | Back alignment and structure |
|---|
Score = 61.9 bits (151), Expect = 7e-11
Identities = 33/174 (18%), Positives = 63/174 (36%), Gaps = 10/174 (5%)
Query: 233 SFPSLNFASLQVLDLSNNDFNSTTPHWLFNITSLLCLDLGSNDLQGDIPDG-FASLNSLQ 291
PSL S Q L L + H N+ ++ + + + + F +L+ +
Sbjct: 25 RIPSLP-PSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVT 83
Query: 292 ELDLSGNSFLGGQLSRNLGKLCNLRTMILSRNNISSEVSDFLDGLSECTNSILLEKLELR 351
+++ L L +L L+ + + + L++ ++ + LE+
Sbjct: 84 HIEIRNTRNLTYIDPDALKELPLLKFLGIFNTGLKM-----FPDLTKVYSTDIFFILEIT 138
Query: 352 FN-QFTGILPISLGSLKN-LRHLVLWQNSFLGSIPPSIGNLTLLKELYLASNQM 403
N T I + L N L L+ N S+ N T L +YL N+
Sbjct: 139 DNPYMTSIPVNAFQGLCNETLTLKLYNNG-FTSVQGYAFNGTKLDAVYLNKNKY 191
|
| >2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239 | Back alignment and structure |
|---|
Score = 58.9 bits (143), Expect = 6e-10
Identities = 34/266 (12%), Positives = 74/266 (27%), Gaps = 62/266 (23%)
Query: 114 DLEYLDLSMNNFTGFQVPEFIGSLKELRYLNLSGSFFSGTIP-QTLGNLSNLLYLDLNNF 172
+ L L + F L + + +S + + NLS + ++++ N
Sbjct: 32 STQTLKLIETHLRTIPSHAFSN-LPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRN- 89
Query: 173 LDQSNQIDLEWLSGLSSLVYFNLGGADLSKAGAYWLEVFNKLHSFVELHLPNCNLPSLPL 232
+ L+ + + +L L + N L P
Sbjct: 90 ----TRN----LTYIDP-------------------DALKELPLLKFLGIFNTGLKMFPD 122
Query: 233 SFPSLNFASLQVLDLSNNDFNSTTPHWLF-NITSLLC-LDLGSNDLQGDIPDGFASLNSL 290
+ +L++++N + ++ P F + + L L +N + + L
Sbjct: 123 LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFT-SVQGYAFNGTKL 181
Query: 291 QELDLSGNSFLGGQLSRNLGKLCNLRTMILSRNNISSEVSDFLDGLSECTNSILLEKLEL 350
+ L+ N ++ D G+ L++
Sbjct: 182 DAVYLNKN------------------------KYLTVIDKDAFGGVYS-----GPSLLDV 212
Query: 351 RFNQFTGILPISLGSLKNLRHLVLWQ 376
T + L LK L W
Sbjct: 213 SQTSVTALPSKGLEHLKELIARNTWT 238
|
| >2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239 | Back alignment and structure |
|---|
Score = 56.2 bits (136), Expect = 4e-09
Identities = 38/241 (15%), Positives = 79/241 (32%), Gaps = 40/241 (16%)
Query: 345 LEKLELRFNQFTGILPISLGSLKNLRHLVLWQNSFLGSIPPSI-GNLTLLKELYLASNQM 403
+ L+L I + +L N+ + + + L + NL+ + + + +
Sbjct: 33 TQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNT-- 90
Query: 404 NGQKISD-SYQHLKNQTELRTLVLNKARISDTISDWFWQLSLTLDELDVAYNELRGRVPN 462
+ ++ LK L+ L + + + L++ N +P
Sbjct: 91 --RNLTYIDPDALKELPLLKFLGIFNTGLKMFPDLTKVYSTDIFFILEITDNPYMTSIPV 148
Query: 463 SLGFNFPAKVDLSFNNFEGRLLLWSFNVTKLYLRDNSFSGLIPNDIGQNLPFLTDLGNLK 522
+ +F L L L +N F+ + F N
Sbjct: 149 N-----------AFQGLCNETL-------TLKLYNNGFTS-VQGYA-----F-----NGT 179
Query: 523 QLITLVISNNNLSGEIP-LLFSN-ISFLYILDMSNNSLSGSTPESIGSLRTVKFLVLRNN 580
+L + ++ N I F S +LD+S S++ + P L +K L+ RN
Sbjct: 180 KLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVT-ALPS--KGLEHLKELIARNT 236
Query: 581 Y 581
+
Sbjct: 237 W 237
|
| >2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239 | Back alignment and structure |
|---|
Score = 48.8 bits (117), Expect = 1e-06
Identities = 36/197 (18%), Positives = 62/197 (31%), Gaps = 43/197 (21%)
Query: 112 LKDLEYLDLSMNN-FTGFQVPEFIGSLKELRYLNLSGSFFSGTIP-QTLGNLSNLLYLDL 169
L ++ + +S++ + F L ++ ++ + + I L L L +L +
Sbjct: 54 LPNISRIYVSIDVTLQQLESHSFYN-LSKVTHIEIRNTRNLTYIDPDALKELPLLKFLGI 112
Query: 170 NNFLDQSNQI----DLEWLSGLSSLVYFNLGGADLSKAGAYWLEVFNKLHSFVELHLPNC 225
N + DL + + N
Sbjct: 113 FN-----TGLKMFPDLTKVYSTDIFFILEITD--------------------------NP 141
Query: 226 NLPSLPL-SFPSLNFASLQVLDLSNNDFNSTTPHWLFNITSLLCLDLGSNDLQGDIPDG- 283
+ S+P+ +F L L L NN F S + FN T L + L N I
Sbjct: 142 YMTSIPVNAFQGLC-NETLTLKLYNNGFTSVQGY-AFNGTKLDAVYLNKNKYLTVIDKDA 199
Query: 284 FASLNS-LQELDLSGNS 299
F + S LD+S S
Sbjct: 200 FGGVYSGPSLLDVSQTS 216
|
| >3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Length = 251 | Back alignment and structure |
|---|
Score = 57.8 bits (140), Expect = 2e-09
Identities = 51/176 (28%), Positives = 70/176 (39%), Gaps = 19/176 (10%)
Query: 233 SFPSLNFASLQVLDLSNNDFNSTTPHWLFNITSLLCLDLGSNDLQGDIPDG-FASLNSLQ 291
S PS A + LDL + + + +T L L+L N LQ + G F L L
Sbjct: 28 SVPSGIPADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQT-LSAGVFDDLTELG 86
Query: 292 ELDLSGNSFLGGQL----SRNLGKLCNLRTMILSRNNISSEVSDFLDGLSECTNSILLEK 347
L L+ N QL L L + L N + S S D L++ L++
Sbjct: 87 TLGLANN-----QLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTK------LKE 135
Query: 348 LELRFNQFTGILPISLGSLKNLRHLVLWQNSFLGSIPPSI-GNLTLLKELYLASNQ 402
L L NQ I + L NL+ L L N L S+P L L+ + L NQ
Sbjct: 136 LRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQ-LQSVPHGAFDRLGKLQTITLFGNQ 190
|
| >3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Length = 251 | Back alignment and structure |
|---|
Score = 53.9 bits (130), Expect = 3e-08
Identities = 43/137 (31%), Positives = 58/137 (42%), Gaps = 11/137 (8%)
Query: 269 LDLGSNDLQGDIPDGFASLNSLQELDLSGNSFLGGQLSRNL-GKLCNLRTMILSRNNISS 327
LDL S L F L L L+L N LS + L L T+ L+ N ++S
Sbjct: 40 LDLQSTGLATLSDATFRGLTKLTWLNLDYNQL--QTLSAGVFDDLTELGTLGLANNQLAS 97
Query: 328 EVSDFLDGLSECTNSILLEKLELRFNQFTGILPISLGSLKNLRHLVLWQNSFLGSIPPSI 387
D L++ L+KL L NQ + L L+ L L N L SIP
Sbjct: 98 LPLGVFDHLTQ------LDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQ-LQSIPAGA 150
Query: 388 -GNLTLLKELYLASNQM 403
LT L+ L L++NQ+
Sbjct: 151 FDKLTNLQTLSLSTNQL 167
|
| >2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149 | Back alignment and structure |
|---|
Score = 53.9 bits (130), Expect = 6e-09
Identities = 30/118 (25%), Positives = 49/118 (41%), Gaps = 11/118 (9%)
Query: 286 SLNSLQELDLSGNSFLGGQLSRNLGKLCNLRTMILSRNNISSEVSDFLDGLSECTNSILL 345
+ + ++EL L + G+L + L + ++S + L + L
Sbjct: 15 TPSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTS-----IANLPKLNK---L 66
Query: 346 EKLELRFNQFTGILPISLGSLKNLRHLVLWQNSF--LGSIPPSIGNLTLLKELYLASN 401
+KLEL N+ +G L + NL HL L N L +I P + L LK L L +
Sbjct: 67 KKLELSDNRVSGGLEVLAEKCPNLTHLNLSGNKIKDLSTIEP-LKKLENLKSLDLFNC 123
|
| >2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149 | Back alignment and structure |
|---|
Score = 47.0 bits (112), Expect = 2e-06
Identities = 27/114 (23%), Positives = 42/114 (36%), Gaps = 15/114 (13%)
Query: 267 LCLDLGSNDLQGDIPDGFASLNSLQELDLSGNSFLGGQLSR--NLGKLCNLRTMILSRNN 324
L LD ++ G + L+ L L+ NL KL L+ + LS N
Sbjct: 22 LVLDNSRSNE-GKLEGLTDEFEELEFLSTINV-----GLTSIANLPKLNKLKKLELSDNR 75
Query: 325 ISSEVSDFLDGLSECTNSILLEKLELRFNQFTGILPIS-LGSLKNLRHLVLWQN 377
+S + + L L L N+ + I L L+NL+ L L+
Sbjct: 76 VSGGLEVLAEKCPN------LTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNC 123
|
| >2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149 | Back alignment and structure |
|---|
Score = 43.1 bits (102), Expect = 4e-05
Identities = 27/116 (23%), Positives = 48/116 (41%), Gaps = 12/116 (10%)
Query: 103 GEISPSLLQLKDLEYLDLSMNNFTGFQVPEFIGSLKELRYLNLSGSFFSGTIPQTLGNLS 162
G++ + ++LE+L T + L +L+ L LS + SG +
Sbjct: 32 GKLEGLTDEFEELEFLSTINVGLTSI---ANLPKLNKLKKLELSDNRVSGGLEVLAEKCP 88
Query: 163 NLLYLDLNNFLDQSNQI----DLEWLSGLSSLVYFNLGGADLSKAGAYWLEVFNKL 214
NL +L+L+ N+I +E L L +L +L +++ Y VF L
Sbjct: 89 NLTHLNLSG-----NKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLL 139
|
| >2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149 | Back alignment and structure |
|---|
Score = 40.8 bits (96), Expect = 2e-04
Identities = 21/92 (22%), Positives = 37/92 (40%), Gaps = 4/92 (4%)
Query: 208 LEVFNKLHSFVELHLPNCNLPSLPLSFPSLNFASLQVLDLSNNDFNSTTPHWLFNITSLL 267
+ ++ L N L S+ + P LN L+ L+LS+N + +L
Sbjct: 35 EGLTDEFEELEFLSTINVGLTSIA-NLPKLN--KLKKLELSDNRVSGGLEVLAEKCPNLT 91
Query: 268 CLDLGSNDLQG-DIPDGFASLNSLQELDLSGN 298
L+L N ++ + L +L+ LDL
Sbjct: 92 HLNLSGNKIKDLSTIEPLKKLENLKSLDLFNC 123
|
| >2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149 | Back alignment and structure |
|---|
Score = 39.3 bits (92), Expect = 8e-04
Identities = 21/67 (31%), Positives = 34/67 (50%), Gaps = 1/67 (1%)
Query: 515 LTDLGNLKQLITLVISNNNLSGEIPLLFSNISFLYILDMSNNSLSG-STPESIGSLRTVK 573
+ +L L +L L +S+N +SG + +L L L++S N + ST E + L +K
Sbjct: 57 IANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLK 116
Query: 574 FLVLRNN 580
L L N
Sbjct: 117 SLDLFNC 123
|
| >1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198 | Back alignment and structure |
|---|
Score = 54.3 bits (131), Expect = 1e-08
Identities = 32/147 (21%), Positives = 59/147 (40%), Gaps = 20/147 (13%)
Query: 236 SLNFASLQVLDLSNNDFN-STTPHWLFNITSLLCLDLGSNDLQGDIPDGFASLNSLQELD 294
S+ + ++L L + + L L +N+++ I + + +L+ L
Sbjct: 19 SVVATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIE-KI-SSLSGMENLRILS 76
Query: 295 LSGNSFLGGQLSR--NLGKLCN-LRTMILSRNNISSEVSDFLDGLSECTNSILLEKLELR 351
L N + + NL + + L + +S N I+S L G+ + N L L +
Sbjct: 77 LGRN-----LIKKIENLDAVADTLEELWISYNQIAS-----LSGIEKLVN---LRVLYMS 123
Query: 352 FNQFTGILPIS-LGSLKNLRHLVLWQN 377
N+ T I L +L L L+L N
Sbjct: 124 NNKITNWGEIDKLAALDKLEDLLLAGN 150
|
| >1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198 | Back alignment and structure |
|---|
Score = 53.5 bits (129), Expect = 2e-08
Identities = 37/167 (22%), Positives = 70/167 (41%), Gaps = 25/167 (14%)
Query: 266 LLCLDLGSNDLQGDIPDGFASLNSLQELDLSGNSFLGGQLSR--NLGKLCNLRTMILSRN 323
+ L ++ + ++L + + L LS N + + +L + NLR + L RN
Sbjct: 27 KVELHGMIPPIE-KMDATLSTLKACKHLALSTN-----NIEKISSLSGMENLRILSLGRN 80
Query: 324 NISSEVSDFLDGLSECTNSILLEKLELRFNQFTGILPISLGSLKNLRHLVLWQNSFLGSI 383
I ++ L ++ LE+L + +NQ + I L NLR L + N + +
Sbjct: 81 LIKK-----IENLDAVADT--LEELWISYNQIASLSGIE--KLVNLRVLYMSNN-KITNW 130
Query: 384 PP--SIGNLTLLKELYLASNQMNGQKISDSYQHLKNQTELRTLVLNK 428
+ L L++L LA N + + Y+ +E R V+ +
Sbjct: 131 GEIDKLAALDKLEDLLLAGNP-----LYNDYKENNATSEYRIEVVKR 172
|
| >1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198 | Back alignment and structure |
|---|
Score = 42.4 bits (100), Expect = 1e-04
Identities = 30/148 (20%), Positives = 52/148 (35%), Gaps = 37/148 (25%)
Query: 104 EISPSLLQLKDLEYLDLSMNNFTGFQVPEFIGSLKELRYLNLSGSFFSGTIPQTLGNLSN 163
++ +L LK ++L LS NN + ++ LR L+L + I
Sbjct: 39 KMDATLSTLKACKHLALSTNNIEKI---SSLSGMENLRILSLGRNLIK-KIENLDAVADT 94
Query: 164 LLYLDLNNFLDQSNQI-DLEWLSGLSSLVYFNLGGADLSKAGAYWLEVFNKLHSFVELHL 222
L L ++ NQI L + L +L + NK+ ++ E+
Sbjct: 95 LEELWISY-----NQIASLSGIEKLVNLRVLYMS--------------NNKITNWGEID- 134
Query: 223 PNCNLPSLPLSFPSLNFASLQVLDLSNN 250
L +L L+ L L+ N
Sbjct: 135 ---KLAALD---------KLEDLLLAGN 150
|
| >2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168 | Back alignment and structure |
|---|
Score = 53.2 bits (128), Expect = 2e-08
Identities = 30/118 (25%), Positives = 49/118 (41%), Gaps = 11/118 (9%)
Query: 286 SLNSLQELDLSGNSFLGGQLSRNLGKLCNLRTMILSRNNISSEVSDFLDGLSECTNSILL 345
+ +++EL L G++ + NL + L + S + L + L
Sbjct: 22 TPAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLIS-----VSNLPKLPK---L 73
Query: 346 EKLELRFNQFTGILPISLGSLKNLRHLVLWQNSF--LGSIPPSIGNLTLLKELYLASN 401
+KLEL N+ G L + L NL HL L N + ++ P + L LK L L +
Sbjct: 74 KKLELSENRIFGGLDMLAEKLPNLTHLNLSGNKLKDISTLEP-LKKLECLKSLDLFNC 130
|
| >2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168 | Back alignment and structure |
|---|
Score = 44.7 bits (106), Expect = 1e-05
Identities = 28/116 (24%), Positives = 46/116 (39%), Gaps = 12/116 (10%)
Query: 103 GEISPSLLQLKDLEYLDLSMNNFTGFQVPEFIGSLKELRYLNLSGSFFSGTIPQTLGNLS 162
G+I + +LE+L L + L +L+ L LS + G + L
Sbjct: 39 GKIEGLTAEFVNLEFLSLINVGLISV---SNLPKLPKLKKLELSENRIFGGLDMLAEKLP 95
Query: 163 NLLYLDLNNFLDQSNQI----DLEWLSGLSSLVYFNLGGADLSKAGAYWLEVFNKL 214
NL +L+L+ N++ LE L L L +L +++ Y VF L
Sbjct: 96 NLTHLNLSG-----NKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLL 146
|
| >2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168 | Back alignment and structure |
|---|
Score = 44.0 bits (104), Expect = 3e-05
Identities = 29/110 (26%), Positives = 46/110 (41%), Gaps = 2/110 (1%)
Query: 219 ELHLPNCNLPSLPLSFPSLNFASLQVLDLSNNDFNSTTPHWLFNITSLLCLDLGSNDLQG 278
EL L NC + + F +L+ L L N S + L + L L+L N + G
Sbjct: 28 ELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISVSN--LPKLPKLKKLELSENRIFG 85
Query: 279 DIPDGFASLNSLQELDLSGNSFLGGQLSRNLGKLCNLRTMILSRNNISSE 328
+ L +L L+LSGN L KL L+++ L +++
Sbjct: 86 GLDMLAEKLPNLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNL 135
|
| >1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567 | Back alignment and structure |
|---|
Score = 56.3 bits (135), Expect = 2e-08
Identities = 40/250 (16%), Positives = 78/250 (31%), Gaps = 22/250 (8%)
Query: 207 WLEVFNKLHSFVELHLPNCNLPSLPLSFPSLNFASLQVLDLSNNDFNSTTPHWLFNITSL 266
+ ++ S E L + L +LS ++ L + L
Sbjct: 318 FRVIWTGSDSQKECVLLKDRPECWCRDSATDE--QLFRCELSVE-KSTVLQSELESCKEL 374
Query: 267 LCLDLGSNDLQGDIPDGFASLNSLQELDLSGNSFLGGQLSRNLGKLCNLRTMILSRNNIS 326
L+ + + ++ LD Q L + +R L
Sbjct: 375 QELEPENKWCL------LTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDDLRSK 428
Query: 327 SEVSDFLDGLSECTNSILLEKLELRFNQFTGILPISLGSLKNLRHLVLWQNSFLGSIPPS 386
+ + + + L L T + L L + HL L N L ++PP+
Sbjct: 429 FLLENSV----LKMEYADVRVLHLAHKDLTVL--CHLEQLLLVTHLDLSHNR-LRALPPA 481
Query: 387 IGNLTLLKELYLASNQMNGQKISDSYQHLKNQTELRTLVLNKARISDTISDWFWQLSLTL 446
+ L L+ L + N + ++ + N L+ L+L R+ + + L
Sbjct: 482 LAALRCLEVLQASDNAL------ENVDGVANLPRLQELLLCNNRLQQSAAIQPLVSCPRL 535
Query: 447 DELDVAYNEL 456
L++ N L
Sbjct: 536 VLLNLQGNSL 545
|
| >1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567 | Back alignment and structure |
|---|
Score = 50.1 bits (119), Expect = 2e-06
Identities = 28/112 (25%), Positives = 43/112 (38%), Gaps = 13/112 (11%)
Query: 107 PSLLQLKDLEYLDLSMNNFTGFQVPEFIGSLKELRYLNLSGSFFSGTIPQTLGNLSNLLY 166
L QL + +LDLS N +P + +L+ L L S + + + NL L
Sbjct: 457 CHLEQLLLVTHLDLSHNRLR--ALPPALAALRCLEVLQASDNALE-NVD-GVANLPRLQE 512
Query: 167 LDLNNFLDQSNQI----DLEWLSGLSSLVYFNLGGADLSKAGAYWLEVFNKL 214
L L N N++ ++ L LV NL G L + + L
Sbjct: 513 LLLCN-----NRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEML 559
|
| >1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567 | Back alignment and structure |
|---|
Score = 49.0 bits (116), Expect = 3e-06
Identities = 29/148 (19%), Positives = 52/148 (35%), Gaps = 37/148 (25%)
Query: 104 EISPSLLQLKDLEYLDLSMNNFTGFQVPEFIGSLKELRYLNLSGSFFSGTIPQTLGNLSN 163
E S ++ D+ L L+ + T V + L + +L+LS + +P L L
Sbjct: 432 ENSVLKMEYADVRVLHLAHKDLT---VLCHLEQLLLVTHLDLSHNRLR-ALPPALAALRC 487
Query: 164 LLYLDLNNFLDQSNQI-DLEWLSGLSSLVYFNLGGADLSKAGAYWLEVFNKLHSFVELHL 222
L L ++ N + +++ ++ L L L N+L +
Sbjct: 488 LEVLQASD-----NALENVDGVANLPRLQELLLCN--------------NRLQQSAAI-- 526
Query: 223 PNCNLPSLPLSFPSLNFASLQVLDLSNN 250
L S P L +L+L N
Sbjct: 527 --QPLVSCP---------RLVLLNLQGN 543
|
| >1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567 | Back alignment and structure |
|---|
Score = 44.0 bits (103), Expect = 1e-04
Identities = 42/297 (14%), Positives = 80/297 (26%), Gaps = 51/297 (17%)
Query: 239 FASLQVLDLSNNDFNSTTPHWLFNITSLLCLDLGSNDLQGDIPDGFASLNSLQELDLSGN 298
L L++ T S L D A+ L +LS
Sbjct: 301 LCDLPAASLNDQLPQHTFRVIWTGSDSQKECVL-LKDRPECWCRDSATDEQLFRCELSVE 359
Query: 299 SFLGGQLSRNLGKLCNLRTMILSRNNISSEVSDFLDGLSECTNSILLEKLELRFNQFTGI 358
Q L L+ + + + + ++ F+ +
Sbjct: 360 KSTVLQ--SELESCKELQELEPENKWCLLT---IILLMRALDPLLYEKETLQYFSTLKAV 414
Query: 359 LPISLGSLKNLRHLVLWQNSFLGSIPPSIGNLTLLKELYLASNQMNGQKISDSYQHLKNQ 418
P+ L +LR L +N ++ L+LA + + HL+
Sbjct: 415 DPMRAAYLDDLRSKFLLEN------SVLKMEYADVRVLHLAHKDL--TVLC----HLEQL 462
Query: 419 TELRTLVLNKARISDTISDWFWQLSLTLDELDVAYNELRGRVPNSLGFNFPAKVDLSFNN 478
+ L L+ R+ + L L+ L + N L + +
Sbjct: 463 LLVTHLDLSHNRLR-ALPPALAALRC-LEVLQASDNALE-----------------NVDG 503
Query: 479 FEGRLLLWSFNVTKLYLRDNSFSGLIPNDIGQNLPFLTDLGNLKQLITLVISNNNLS 535
L +L L +N + L + +L+ L + N+L
Sbjct: 504 VANLPRL-----QELLLCNNRLQ---------QSAAIQPLVSCPRLVLLNLQGNSLC 546
|
| >1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567 | Back alignment and structure |
|---|
Score = 43.2 bits (101), Expect = 2e-04
Identities = 37/212 (17%), Positives = 68/212 (32%), Gaps = 24/212 (11%)
Query: 374 LWQNSFLGSIPPSIGNLTLLKELYLASNQMNGQKISDSYQHLKNQTELRTLVLNKARISD 433
+ L L+ + + L++ EL+ L
Sbjct: 332 VLLKDRPECWCRDSATDEQLFRCELSVEKSTVLQ-----SELESCKELQELEPENKWCLL 386
Query: 434 TISDWFWQL--SLTLDELDVAYNELRGRVPNSLGFNFPAKVDLSFNNFEGRLLLWSFNVT 491
TI L L E ++ L+ P + + N L + +V
Sbjct: 387 TIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDDLRSKFLLENSV--LKMEYADVR 444
Query: 492 KLYLRDNSFSGLIPNDIGQNLPFLTDLGNLKQLITLVISNNNLSGEIPLLFSNISFLYIL 551
L+L + L L L + L +S+N L +P + + L +L
Sbjct: 445 VLHLAHKDLTVLCH------------LEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVL 491
Query: 552 DMSNNSLSGSTPESIGSLRTVKFLVLRNNYLS 583
S+N+L + + +L ++ L+L NN L
Sbjct: 492 QASDNAL--ENVDGVANLPRLQELLLCNNRLQ 521
|
| >3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} Length = 362 | Back alignment and structure |
|---|
Score = 55.5 bits (134), Expect = 2e-08
Identities = 66/394 (16%), Positives = 122/394 (30%), Gaps = 95/394 (24%)
Query: 105 ISPSLLQLKDLEYLDLSMNNFTGFQVPEFIGSLKE----LRYLNLSGSFFSGTIPQTLG- 159
+ + LDLS+NN E I + + LNLSG+ L
Sbjct: 14 VEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQ 73
Query: 160 ----NLSNLLYLDLNNFLDQSNQIDLEWLSGLSSLVYFNLGGADLSKAGAYWLEVFNKLH 215
+N+ L+L+ N + + +L K
Sbjct: 74 ILAAIPANVTSLNLSG-----NFLSYK-------------SSDELVKT------------ 103
Query: 216 SFVELHLPNCNLPSLPLSFPSLNFASLQVLDLSNNDFNSTTPHWLFNI-----TSLLCLD 270
L ++ VLDL NDF+S + S+ L+
Sbjct: 104 ----LAAIPF---------------TITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLN 144
Query: 271 LGSNDLQGD----IPDGFASLN-SLQELDLSGNSF--LGGQ-LSRNLGKL-CNLRTMILS 321
L NDL + A++ ++ L+L GN+ L++ L + ++ ++ LS
Sbjct: 145 LRGNDLGIKSSDELIQILAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLS 204
Query: 322 RNNISSE-VSDFLDGLSECTNSILLEKLELRFNQFTG----ILPISLGSLKNLRHLVLWQ 376
N + + ++ S N + L L N G L + SLK+L+ + L
Sbjct: 205 ANLLGLKSYAELAYIFSSIPNH--VVSLNLCLNCLHGPSLENLKLLKDSLKHLQTVYLDY 262
Query: 377 NSF-------LGSIPPSIGNLTLLKELYLASNQMN---GQKISDSYQHLKNQTELRTLVL 426
+ ++ + N+ + + +++ IS+ + L + L
Sbjct: 263 DIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEIHPSHSIPISNLIREL--SGKADVPSL 320
Query: 427 NKARISDTISDWFWQLSL----TLDELDVAYNEL 456
+ L L E L
Sbjct: 321 LNQCLIFAQKHQTNIEDLNIPDELRESIQTCKPL 354
|
| >3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens} Length = 372 | Back alignment and structure |
|---|
Score = 54.0 bits (130), Expect = 6e-08
Identities = 56/314 (17%), Positives = 97/314 (30%), Gaps = 45/314 (14%)
Query: 159 GNLSNLLYLDLNNFLDQSNQIDLEWLSGLSSLVYFNLGGADLSKAG----AYWLEVFNKL 214
L LD F + LSSL NL G ++ A L
Sbjct: 44 QVLPPSELLDHLFFHYEFQNQRF-SAEVLSSLRQLNLAGVRMTPVKCTVVAAVLGSGR-- 100
Query: 215 HSFVELHLPNCNLPSLPLSFPSLNFASLQVLDLSNNDFNSTTPHWL-----FNITSLLCL 269
H+ E++L +C L L F + L L N L + + L
Sbjct: 101 HALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLLLHDQCQITTL 160
Query: 270 DLGSNDLQGD----IPDGFASLNSLQELDLSGNSF--LGGQ-LSRNLGKLCNLRTMILSR 322
L +N L + +G A S+ L L G + L+ L + L+ + ++
Sbjct: 161 RLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAY 220
Query: 323 NNISSE-VSDFLDGLSECTNSILLEKLELRFNQFT--GILPIS--LGSLKNLRHLVLW-- 375
N E + LE L L FN+ + G + G+ + +V+
Sbjct: 221 NGAGDTAALALARAAREHPS---LELLHLYFNELSSEGRQVLRDLGGAAEGGARVVVSLT 277
Query: 376 QNSFLGSI-----------PPSIGNLTLLKELYLASNQMNGQKISDS-----YQHLKNQT 419
+ + + S + + L L + + + Q L+ +
Sbjct: 278 EGTAVSEYWSVILSEVQRNLNSWDRARVQRHLELLLRDLEDSRGATLNPWRKAQLLRVEG 337
Query: 420 ELRTLVLNKARISD 433
E+R L+
Sbjct: 338 EVRALLEQLGSSGS 351
|
| >1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176 | Back alignment and structure |
|---|
Score = 51.6 bits (124), Expect = 8e-08
Identities = 30/125 (24%), Positives = 46/125 (36%), Gaps = 19/125 (15%)
Query: 282 DGFASLNSLQELDLSGNSFLGGQLSR--NLGKLC-NLRTMILSRNNISSEVSDFLDGLSE 338
+ + +ELDL G ++ NLG + S N I LDG
Sbjct: 13 AQYTNAVRDRELDLRGY-----KIPVIENLGATLDQFDAIDFSDNEIRK-----LDGFPL 62
Query: 339 CTNSILLEKLELRFNQFTGILPISLGSLKNLRHLVLWQN--SFLGSIPPSIGNLTLLKEL 396
L+ L + N+ I +L +L L+L N LG + P + +L L L
Sbjct: 63 LRR---LKTLLVNNNRICRIGEGLDQALPDLTELILTNNSLVELGDLDP-LASLKSLTYL 118
Query: 397 YLASN 401
+ N
Sbjct: 119 CILRN 123
|
| >1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176 | Back alignment and structure |
|---|
Score = 43.5 bits (103), Expect = 4e-05
Identities = 24/107 (22%), Positives = 40/107 (37%), Gaps = 12/107 (11%)
Query: 112 LKDLEYLDLSMNNFTGFQVPEFIGSLKELRYLNLSGSFFSGTIPQTLGNLSNLLYLDLNN 171
L + +D S N + L+ L+ L ++ + L +L L L N
Sbjct: 41 LDQFDAIDFSDNEIRKL---DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELILTN 97
Query: 172 FLDQSNQI----DLEWLSGLSSLVYFNLGGADLSKAGAYWLEVFNKL 214
N + DL+ L+ L SL Y + ++ Y L V K+
Sbjct: 98 -----NSLVELGDLDPLASLKSLTYLCILRNPVTNKKHYRLYVIYKV 139
|
| >1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176 | Back alignment and structure |
|---|
Score = 43.1 bits (102), Expect = 5e-05
Identities = 22/118 (18%), Positives = 42/118 (35%), Gaps = 4/118 (3%)
Query: 211 FNKLHSFVELHLPNCNLPSLPLSFPSLNFASLQVLDLSNNDFNSTTPHWLFNITSLLCLD 270
+ EL L +P + +D S+N+ + L L
Sbjct: 15 YTNAVRDRELDLRGYKIPVI--ENLGATLDQFDAIDFSDNEIRKLDG--FPLLRRLKTLL 70
Query: 271 LGSNDLQGDIPDGFASLNSLQELDLSGNSFLGGQLSRNLGKLCNLRTMILSRNNISSE 328
+ +N + +L L EL L+ NS + L L +L + + RN ++++
Sbjct: 71 VNNNRICRIGEGLDQALPDLTELILTNNSLVELGDLDPLASLKSLTYLCILRNPVTNK 128
|
| >3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* Length = 592 | Back alignment and structure |
|---|
Score = 54.2 bits (130), Expect = 8e-08
Identities = 55/390 (14%), Positives = 125/390 (32%), Gaps = 27/390 (6%)
Query: 61 DCCSWSGVSCNNRTASVIKLNLNN-PFRDSFGSFEDDAGHELGGEISPSLLQLKDLEYLD 119
C + + + R ++ L L P F ++ G + ++ L+ L+ +
Sbjct: 59 LCYTATPDRLSRRFPNLRSLKLKGKPRAAMFNLIPENWGGYVTPWVTEISNNLRQLKSVH 118
Query: 120 LSMNNFTGFQVPEFIGS-LKELRYLNLSG--SFFSGTIPQTLGNLSNLLYLDL--NNFLD 174
+ + + +L L L F + + + + + L + ++F +
Sbjct: 119 FRRMIVSDLDLDRLAKARADDLETLKLDKCSGFTTDGLLSIVTHCRKIKTLLMEESSFSE 178
Query: 175 QSNQIDLEWLSGLSSLVYFNLGGADLSKAGAYWLE-VFNKLHSFVELHLPNCNLPSLPLS 233
+ + E +SL N + +K LE + S V + + + + L
Sbjct: 179 KDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILELVGF 238
Query: 234 FPSLNFASLQVLDLSNNDFNSTTPHWLFNITSLLCLDLGSNDLQGD--IPDGFASLNSLQ 291
F + +L+ + + + P N+ L G +P F ++
Sbjct: 239 FKAAA--NLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGPNEMPILFPFAAQIR 296
Query: 292 ELDLSGNSFLGGQLSRNLGKLCNLRTMILSRNNISSEVSDFLDG--------LSECTNSI 343
+LDL + K NL + + + +
Sbjct: 297 KLDLLYALLETEDHCTLIQKCPNLEVLETRNVIGDRGLEVLAQYCKQLKRLRIERGADEQ 356
Query: 344 LLEKLELRFNQFTGILPISLGSLKNLRHLVLWQNSF----LGSIPPSIGNLTLLKELYLA 399
+E E +Q G++ ++ G + L ++ ++ + L SI + NL + + L
Sbjct: 357 GMEDEEGLVSQ-RGLIALAQG-CQELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLD 414
Query: 400 SNQMNGQKISDS--YQHLKNQTELRTLVLN 427
+ D+ L +LR
Sbjct: 415 REERITDLPLDNGVRSLLIGCKKLRRFAFY 444
|
| >3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* Length = 592 | Back alignment and structure |
|---|
Score = 41.9 bits (98), Expect = 6e-04
Identities = 37/260 (14%), Positives = 71/260 (27%), Gaps = 23/260 (8%)
Query: 112 LKDLEYLDLSMNNFTGFQVPEFIGSLKELRYLNLSGSFFSGTIPQTLGNLSNLLYLDLNN 171
+ LDL I L L + L L +
Sbjct: 292 AAQIRKLDLLYALLETEDHCTLIQKCPNLEVLETRNVIGDRGLEVLAQYCKQLKRLRIER 351
Query: 172 FLDQSNQIDLEWL----------SGLSSLVYFNLGGADLSKAGAYWL-EVFNKLHSFVEL 220
D+ D E L G L Y + +D++ + L F +
Sbjct: 352 GADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYVSDITNESLESIGTYLKNLCDFRLV 411
Query: 221 HLPNCNLPSLP-----LSFPSLNFASLQVLDLSNNDFNSTTP---HWLFNITSLLCLDLG 272
L + + + L+ T + ++ + LG
Sbjct: 412 LLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLG 471
Query: 273 SNDLQGD-IPDGFASLNSLQELDLSGNSFLGGQLSRNLGKLCNLRTMILSRNNISSEVSD 331
+ + + +LQ+L++ G F ++ + KL +LR + + S D
Sbjct: 472 YVGESDEGLMEFSRGCPNLQKLEMRGCCFSERAIAAAVTKLPSLRYLWVQGYRASMTGQD 531
Query: 332 FLDGLSECTNSILLEKLELR 351
+ N +E + R
Sbjct: 532 LMQMARPYWN---IELIPSR 548
|
| >3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} Length = 229 | Back alignment and structure |
|---|
Score = 51.2 bits (123), Expect = 2e-07
Identities = 41/138 (29%), Positives = 53/138 (38%), Gaps = 17/138 (12%)
Query: 165 LYLDLNNFLDQSNQIDLEWLSGLSSLVYFNLGGADLSK--AGAYWLEVFNKLHSFVELHL 222
LYL N Q +++ L +L LG L G VF+ L L L
Sbjct: 45 LYLHDN----QITKLEPGVFDSLINLKELYLGSNQLGALPVG-----VFDSLTQLTVLDL 95
Query: 223 PNCNLPSLPLS-FPSLNFASLQVLDLSNNDFNSTTPHWLFNITSLLCLDLGSNDLQGDIP 281
L LP + F L L+ L + N P + +T L L L N L+ IP
Sbjct: 96 GTNQLTVLPSAVFDRL--VHLKELFMCCNKLTEL-PRGIERLTHLTHLALDQNQLKS-IP 151
Query: 282 DG-FASLNSLQELDLSGN 298
G F L+SL L GN
Sbjct: 152 HGAFDRLSSLTHAYLFGN 169
|
| >3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} Length = 229 | Back alignment and structure |
|---|
Score = 50.5 bits (121), Expect = 4e-07
Identities = 43/159 (27%), Positives = 66/159 (41%), Gaps = 19/159 (11%)
Query: 224 NCNLPSLPLSFPSLNFASLQVLDLSNNDFNSTTPHWLFNITSLLCLDLGSNDLQGDIPDG 283
+C S P+ + Q+L L +N P ++ +L L LGSN L +P G
Sbjct: 25 DCRSKRHA-SVPAGIPTNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLG-ALPVG 82
Query: 284 -FASLNSLQELDLSGNSFLGGQL----SRNLGKLCNLRTMILSRNNISSEVSDFLDGLSE 338
F SL L LDL N QL S +L +L+ + + N ++ + ++ L+
Sbjct: 83 VFDSLTQLTVLDLGTN-----QLTVLPSAVFDRLVHLKELFMCCNKLTE-LPRGIERLTH 136
Query: 339 CTNSILLEKLELRFNQFTGILPISLGSLKNLRHLVLWQN 377
L L L NQ I + L +L H L+ N
Sbjct: 137 ------LTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGN 169
|
| >3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} Length = 229 | Back alignment and structure |
|---|
Score = 46.6 bits (111), Expect = 7e-06
Identities = 38/135 (28%), Positives = 49/135 (36%), Gaps = 32/135 (23%)
Query: 269 LDLGSNDLQGDIPDGFASLNSLQELDLSGNSFLGGQLSRNLGKLCNLRTMILSRNNISSE 328
L L N + P F SL +L+EL L N QL +
Sbjct: 45 LYLHDNQITKLEPGVFDSLINLKELYLGSN-----QLG-----------------ALPVG 82
Query: 329 VSDFLDGLSECTNSILLEKLELRFNQFTGILPISLGSLKNLRHLVLWQNSFLGSIPPSIG 388
V D L T L L+L NQ T + L +L+ L + N L +P I
Sbjct: 83 VFDSL------TQ---LTVLDLGTNQLTVLPSAVFDRLVHLKELFMCCNK-LTELPRGIE 132
Query: 389 NLTLLKELYLASNQM 403
LT L L L NQ+
Sbjct: 133 RLTHLTHLALDQNQL 147
|
| >2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri} Length = 208 | Back alignment and structure |
|---|
Score = 49.7 bits (119), Expect = 6e-07
Identities = 47/159 (29%), Positives = 65/159 (40%), Gaps = 18/159 (11%)
Query: 224 NCNLPSLPLSFPSLNFASLQVLDLSNNDFNSTTPHWLFNITSLLCLDLGSNDLQGDIPDG 283
C S P+ A LDL N S +TSL L LG N LQ +P+G
Sbjct: 13 ECYSQGRT-SVPTGIPAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQ-SLPNG 70
Query: 284 -FASLNSLQELDLSGNSFLGGQL----SRNLGKLCNLRTMILSRNNISSEVSDFLDGLSE 338
F L SL L+LS N QL + KL L+ + L+ N + S D L++
Sbjct: 71 VFNKLTSLTYLNLSTN-----QLQSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQ 125
Query: 339 CTNSILLEKLELRFNQFTGILPISLGSLKNLRHLVLWQN 377
L+ L L NQ + L +L+++ L N
Sbjct: 126 ------LKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDN 158
|
| >2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri} Length = 208 | Back alignment and structure |
|---|
Score = 40.4 bits (95), Expect = 6e-04
Identities = 33/113 (29%), Positives = 46/113 (40%), Gaps = 9/113 (7%)
Query: 291 QELDLSGNSFLGGQLSRNLGKLCNLRTMILSRNNISSEVSDFLDGLSECTNSILLEKLEL 350
LDL NS L + +L +L + L N + S + + L+ L L L
Sbjct: 31 TYLDLETNS-LKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTS------LTYLNL 83
Query: 351 RFNQFTGILPISLGSLKNLRHLVLWQNSFLGSIPPSI-GNLTLLKELYLASNQ 402
NQ + L L+ L L N L S+P + LT LK+L L NQ
Sbjct: 84 STNQLQSLPNGVFDKLTQLKELALNTNQ-LQSLPDGVFDKLTQLKDLRLYQNQ 135
|
| >2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347 | Back alignment and structure |
|---|
Score = 50.1 bits (119), Expect = 1e-06
Identities = 25/141 (17%), Positives = 41/141 (29%), Gaps = 35/141 (24%)
Query: 264 TSLLCLDLGSNDLQGDIPDGFASLNSLQELDLSGNSFLGGQLSRNLGKLCNLRTMILSRN 323
+ L C G+ D +L EL +
Sbjct: 11 SGLRCTRDGALD----SLHHLPGAENLTELYIENQ------------------------Q 42
Query: 324 NISSEVSDFLDGLSECTNSILLEKLELRFNQFTGILPISLGSLKNLRHLVLWQNSFLGSI 383
++ L GL E L L + + + P + L L L N+ L S+
Sbjct: 43 HLQHLELRDLRGLGE------LRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNA-LESL 95
Query: 384 PPSIGNLTLLKELYLASNQMN 404
L+EL L+ N ++
Sbjct: 96 SWKTVQGLSLQELVLSGNPLH 116
|
| >2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347 | Back alignment and structure |
|---|
Score = 47.4 bits (112), Expect = 8e-06
Identities = 26/95 (27%), Positives = 34/95 (35%), Gaps = 5/95 (5%)
Query: 208 LEVFNKLHSFVELHLPNCN-LPSLPL-SFPSLNFASLQVLDLSNNDFNSTTPHWLFNITS 265
L + EL++ N L L L L L+ L + + P
Sbjct: 24 LHHLPGAENLTELYIENQQHLQHLELRDLRGL--GELRNLTIVKSGLRFVAPDAFHFTPR 81
Query: 266 LLCLDLGSNDLQGDIPDGFASLNSLQELDLSGNSF 300
L L+L N L+ L SLQEL LSGN
Sbjct: 82 LSRLNLSFNALESLSWKTVQGL-SLQELVLSGNPL 115
|
| >2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347 | Back alignment and structure |
|---|
Score = 44.3 bits (104), Expect = 7e-05
Identities = 24/94 (25%), Positives = 41/94 (43%), Gaps = 10/94 (10%)
Query: 489 NVTKLYLRDNSFSGLIPNDIGQNLPFLTDLGNLKQLITLVISNNNLSGEIPLLFSNISFL 548
N+T+LY+ + + DL L +L L I + L P F L
Sbjct: 32 NLTELYIENQQHLQHLELR---------DLRGLGELRNLTIVKSGLRFVAPDAFHFTPRL 82
Query: 549 YILDMSNNSLSGSTPESIGSLRTVKFLVLRNNYL 582
L++S N+L + +++ L +++ LVL N L
Sbjct: 83 SRLNLSFNALESLSWKTVQGL-SLQELVLSGNPL 115
|
| >2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347 | Back alignment and structure |
|---|
Score = 42.4 bits (99), Expect = 3e-04
Identities = 19/90 (21%), Positives = 28/90 (31%), Gaps = 8/90 (8%)
Query: 515 LTDLGNLKQLITLVISNNNLSGEIPL-LFSNISFLYILDMSNNSLSGSTPESIGSLRTVK 573
L L + L L I N + L + L L + + L P++ +
Sbjct: 24 LHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLS 83
Query: 574 FLVLRNNYLSGKLP------LSLKNCTFQE 597
L L N L L LSL+
Sbjct: 84 RLNLSFNALE-SLSWKTVQGLSLQELVLSG 112
|
| >2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347 | Back alignment and structure |
|---|
Score = 42.0 bits (98), Expect = 4e-04
Identities = 18/92 (19%), Positives = 30/92 (32%), Gaps = 6/92 (6%)
Query: 249 NNDFNSTTPHWLFNITSLLCLDLGSNDLQGDIPDG-FASLNSLQELDLSGN--SFLGGQL 305
D + H L +L L + + + L L+ L + + F+
Sbjct: 16 TRDGALDSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDA 75
Query: 306 SRNLGKLCNLRTMILSRNNISSEVSDFLDGLS 337
+L L LS N + S + GLS
Sbjct: 76 FHFTPRLSRLN---LSFNALESLSWKTVQGLS 104
|
| >1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7 Length = 192 | Back alignment and structure |
|---|
Score = 48.5 bits (116), Expect = 1e-06
Identities = 38/161 (23%), Positives = 60/161 (37%), Gaps = 41/161 (25%)
Query: 224 NCN---LPSLPLSFPSLNFASLQVLDLSNNDFNSTTPHWLFN-ITSLLCLDLGSNDLQGD 279
+C L +P P L L++N+ + LF + L+ L+L N L
Sbjct: 14 DCTGRGLKEIPRDIP----LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLT-G 68
Query: 280 IPDG-FASLNSLQELDLSGNSFLGGQLSRNLGKLCNLRTMILSRNNISSEVSDFLDGLSE 338
I F + +QEL L N ++ IS+++ GL +
Sbjct: 69 IEPNAFEGASHIQELQLGEN-----KIKE-----------------ISNKM---FLGLHQ 103
Query: 339 CTNSILLEKLELRFNQFTGILPISLGSLKNLRHLVLWQNSF 379
L+ L L NQ + ++P S L +L L L N F
Sbjct: 104 ------LKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPF 138
|
| >1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7 Length = 192 | Back alignment and structure |
|---|
Score = 40.8 bits (96), Expect = 4e-04
Identities = 25/85 (29%), Positives = 35/85 (41%), Gaps = 9/85 (10%)
Query: 320 LSRNNISS-EVSDFLDGLSECTNSILLEKLELRFNQFTGILPISLGSLKNLRHLVLWQNS 378
L+ N + L L KLEL+ NQ TGI P + +++ L L +N
Sbjct: 36 LNDNELGRISSDGLFGRLPH------LVKLELKRNQLTGIEPNAFEGASHIQELQLGENK 89
Query: 379 FLGSIPPSI-GNLTLLKELYLASNQ 402
+ I + L LK L L NQ
Sbjct: 90 -IKEISNKMFLGLHQLKTLNLYDNQ 113
|
| >1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7 Length = 192 | Back alignment and structure |
|---|
Score = 40.0 bits (94), Expect = 8e-04
Identities = 18/59 (30%), Positives = 27/59 (45%), Gaps = 3/59 (5%)
Query: 346 EKLELRFNQFTGILPISL-GSLKNLRHLVLWQNSFLGSIPPSI-GNLTLLKELYLASNQ 402
+L L N+ I L G L +L L L +N L I P+ + ++EL L N+
Sbjct: 32 TELLLNDNELGRISSDGLFGRLPHLVKLELKRNQ-LTGIEPNAFEGASHIQELQLGENK 89
|
| >2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* Length = 594 | Back alignment and structure |
|---|
Score = 49.5 bits (118), Expect = 2e-06
Identities = 49/262 (18%), Positives = 89/262 (33%), Gaps = 17/262 (6%)
Query: 184 LSGLSSLVYFNLGGADLSKAGAYWLEVF-NKLHSFVELHLPNCNLPSLPLSFPSLNFASL 242
L G FNL W+E + E+ L + L + +F +
Sbjct: 73 LKGKPHFADFNLVPDGWGGYVYPWIEAMSSSYTWLEEIRLKRMVVTDDCLELIAKSFKNF 132
Query: 243 QVLDLSNNDFNSTTPHWLFNI----TSLLCLDLGSNDLQGDIPDGFASL----NSLQELD 294
+VL LS+ + + L I +L LDL +D+ + SL L+
Sbjct: 133 KVLVLSSCE--GFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDTYTSLVSLN 190
Query: 295 LSG-NSFLGGQLSRNLGKLC-NLRTMILSRNNISSEVSDFLDGLSECTNSILLEKLELRF 352
+S S + L C NL+++ L+R +++ L +
Sbjct: 191 ISCLASEVSFSALERLVTRCPNLKSLKLNRAVPLEKLATLLQRAPQLEELGTGGYTAEVR 250
Query: 353 NQFTGILPISLGSLKNLRHLVLWQNSFLGSIPPSIGNLTLLKELYLASNQMNGQKISDSY 412
L ++L K LR L + ++ +P + L L L+ + +
Sbjct: 251 PDVYSGLSVALSGCKELRCLSGFWDAVPAYLPAVYSVCSRLTTLNLSYATVQSYDLV--- 307
Query: 413 QHLKNQTELRTLVLNKARISDT 434
+ L +L+ L + I D
Sbjct: 308 KLLCQCPKLQRLWVLD-YIEDA 328
|
| >2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* Length = 594 | Back alignment and structure |
|---|
Score = 47.6 bits (113), Expect = 9e-06
Identities = 60/403 (14%), Positives = 123/403 (30%), Gaps = 23/403 (5%)
Query: 73 RTASVIKLNLNN-PFRDSFGSFEDDAGHELGGEISPSLLQLKDLEYLDLSMNNFTGFQVP 131
R V + L P F D G + I LE + L T +
Sbjct: 64 RFPKVRSVELKGKPHFADFNLVPDGWGGYVYPWIEAMSSSYTWLEEIRLKRMVVTDDCLE 123
Query: 132 EFIGSLKELRYLNLSG--SFFSGTIPQTLGNLSNLLYLDL--NNFLDQSNQIDLEWLSGL 187
S K + L LS F + + NL LDL ++ D S +
Sbjct: 124 LIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDTY 183
Query: 188 SSLVYFNLGGADLSKAGAYWLEVFNKLHSFVELHLPNC----NLPSLPLSFPSLNFASLQ 243
+SLV N+ + + + + + L L L +L P L
Sbjct: 184 TSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRAVPLEKLATLLQRAPQLEELGTG 243
Query: 244 VLDLSNNDFNSTTPHWLF-NITSLLCLDLGSNDLQGDIPDGFASLNSLQELDLSGNSFLG 302
+ L CL + + +P ++ + L L+LS +
Sbjct: 244 GYTAEVRPDVYSGLSVALSGCKELRCLSGFWDAVPAYLPAVYSVCSRLTTLNLSYATVQS 303
Query: 303 GQLSRNLGKLCNLRTMILSRNNISSEVSDFLDGLSECTNSILLEKLELRFNQFTGILPIS 362
L + L + L+ + + + + + + +
Sbjct: 304 YDLVKLLCQCPKLQRLWVLDYIEDAGLEVLASTCKDLRELRVFPSEPFVMEPNVALTEQG 363
Query: 363 LGSL----KNLRHLVLWQNSF-------LGSIPPSIGNLTLLKELYLASNQMNGQKISDS 411
L S+ L ++ + + P++ L A + + + +
Sbjct: 364 LVSVSMGCPKLESVLYFCRQMTNAALITIARNRPNMTRFRLCIIEPKAPDYLTLEPLDIG 423
Query: 412 YQHL-KNQTELRTLVLNKARISDTISDWFWQLSLTLDELDVAY 453
+ + ++ +LR L L+ ++D + ++ + ++ L VA+
Sbjct: 424 FGAIVEHCKDLRRLSLSGL-LTDKVFEYIGTYAKKMEMLSVAF 465
|
| >2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* Length = 594 | Back alignment and structure |
|---|
Score = 44.9 bits (106), Expect = 6e-05
Identities = 31/241 (12%), Positives = 69/241 (28%), Gaps = 21/241 (8%)
Query: 112 LKDLEYLDLSMNNFTGFQVPEFIGSLKELRYLNLSGSFFSGTIPQTLGNLSNLLYLDLNN 171
L L+LS + + + + +L+ L + + +L L +
Sbjct: 288 CSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDYIEDAGLEVLASTCKDLRELRVFP 347
Query: 172 FLDQSNQID-------LEWLS-GLSSLVYFNLGGADLSKAGAYWLEVFNKLHSFVELHLP 223
+ + L +S G L ++ A + + L
Sbjct: 348 SEPFVMEPNVALTEQGLVSVSMGCPKLESVLYFCRQMTNAALI--TIARNRPNMTRFRLC 405
Query: 224 NCNLPSLPLSFPSL----------NFASLQVLDLSNNDFNSTTPHWLFNITSLLCLDLGS 273
+ + L+ L LS + + + L +
Sbjct: 406 IIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSLSGLLTDKVFEYIGTYAKKMEMLSVAF 465
Query: 274 NDLQGD-IPDGFASLNSLQELDLSGNSFLGGQLSRNLGKLCNLRTMILSRNNISSEVSDF 332
+ + +SL++L++ F L N KL +R++ +S ++S
Sbjct: 466 AGDSDLGMHHVLSGCDSLRKLEIRDCPFGDKALLANASKLETMRSLWMSSCSVSFGACKL 525
Query: 333 L 333
L
Sbjct: 526 L 526
|
| >2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* Length = 594 | Back alignment and structure |
|---|
Score = 43.7 bits (103), Expect = 1e-04
Identities = 50/351 (14%), Positives = 106/351 (30%), Gaps = 42/351 (11%)
Query: 112 LKDLEYLDLSM--NNFTGFQVPEFIGSLKELRYLNLSGSFFSGTIPQTLGNLSNLLYLDL 169
L L++S + + + + L+ L L+ + + L L L
Sbjct: 183 YTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRAVPLEKLATLLQRAPQLEELGT 242
Query: 170 NNFLDQSNQIDLEWLSGLSSLVYFNLGGADLSKAG----AYWLEVFNKLHSFVELHLPNC 225
+ + ++ + SGLS + LS AY V++ L+L
Sbjct: 243 GGY---TAEVRPDVYSGLSVALSGCKELRCLSGFWDAVPAYLPAVYSVCSRLTTLNLSYA 299
Query: 226 NLPSLPLSFPSLNFASLQVLDLSNNDFNSTTPHWLFNITSLLCLDLGSNDLQGDIPDG-- 283
+ S L LQ L + + ++ L L + ++ P+
Sbjct: 300 TVQSYDLVKLLCQCPKLQRLWVLDYIEDAGLEVLASTCKDLRELRVFPSEPFVMEPNVAL 359
Query: 284 --------FASLNSLQELDLSGNSFLGGQ----LSRNLGKLCNLRTMILSRNNISSEVSD 331
L+ + L + ++RN + R I+ +
Sbjct: 360 TEQGLVSVSMGCPKLESV-LYFCRQMTNAALITIARNRPNMTRFRLCIIEPKAPDYLTLE 418
Query: 332 FLDG-----LSECTNSILLEKLELRFNQFTGILPISLGS-LKNLRHLVL-WQNSFLGSIP 384
LD + C + L +L L T + +G+ K + L + + +
Sbjct: 419 PLDIGFGAIVEHCKD---LRRLSLS-GLLTDKVFEYIGTYAKKMEMLSVAFAGDSDLGMH 474
Query: 385 PSIGNLTLLKELYLASNQMNGQKISD--SYQHLKNQTELRTLVLNKARISD 433
+ L++L + D + +R+L ++ +S
Sbjct: 475 HVLSGCDSLRKLEIRDCP-----FGDKALLANASKLETMRSLWMSSCSVSF 520
|
| >2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A Length = 336 | Back alignment and structure |
|---|
Score = 48.7 bits (116), Expect = 3e-06
Identities = 57/316 (18%), Positives = 98/316 (31%), Gaps = 59/316 (18%)
Query: 62 CCSWSGVSCNNRTASVIKLNLNNPFRDSFGSFEDDAGHELGGEISPSLLQLKD------L 115
C W ++ + + L N D G S L + +
Sbjct: 36 CKRWYRLASDESLWQTLDLTGKNLHPDVTGRLLSQGVIAFRCPRSFMDQPLAEHFSPFRV 95
Query: 116 EYLDLSMNNFTGFQVPEFIGSLKELRYLNLSGSFFSGTIPQTLGNLSNLLYLDLNNFLDQ 175
+++DLS + + + +L+ L+L G S I TL SNL+ L+L+
Sbjct: 96 QHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGF 155
Query: 176 SNQIDLEWLSGLSSLVYFNLGG-ADLSKAGAYWLEVFNKLHSFVELHLPNCNLPSLPLSF 234
S LS S L NL D ++ + V
Sbjct: 156 SEFALQTLLSSCSRLDELNLSWCFDFTEKH---------VQVAVAHVSET---------- 196
Query: 235 PSLNFASLQVLDLSNNDFNSTTPHWLFNITSLLCLDLGSNDLQGDIPDGFASLNSLQELD 294
+ L+LS + N+ L +L LD
Sbjct: 197 -------ITQLNLSG---------YRKNLQKSDLSTLVRR------------CPNLVHLD 228
Query: 295 LSGNSFLGGQLSRNLGKLCNLRTMILSRNNISSEVSDFLDGLSECTNSILLEKLELRFNQ 354
LS + L + +L L+ + LSR ++ + L E L+ L++
Sbjct: 229 LSDSVMLKNDCFQEFFQLNYLQHLSLSRC---YDIIP--ETLLELGEIPTLKTLQVFGIV 283
Query: 355 FTGILPISLGSLKNLR 370
G L + +L +L+
Sbjct: 284 PDGTLQLLKEALPHLQ 299
|
| >2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens} Length = 193 | Back alignment and structure |
|---|
Score = 46.9 bits (112), Expect = 3e-06
Identities = 31/112 (27%), Positives = 46/112 (41%), Gaps = 19/112 (16%)
Query: 224 NCN---LPSLPLSFPSLNFASLQVLDLSNNDFNSTTPHWLFNITSLLCLDLGSNDLQGDI 280
C+ L LP P + L L N F + P L N L +DL +N + +
Sbjct: 16 RCSNKGLKVLPKGIP----RDVTELYLDGNQF-TLVPKELSNYKHLTLIDLSNNRIS-TL 69
Query: 281 PDG-FASLNSLQELDLSGNSFLGGQLS----RNLGKLCNLRTMILSRNNISS 327
+ F+++ L L LS N +L R L +LR + L N+IS
Sbjct: 70 SNQSFSNMTQLLTLILSYN-----RLRCIPPRTFDGLKSLRLLSLHGNDISV 116
|
| >2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens} Length = 193 | Back alignment and structure |
|---|
Score = 45.8 bits (109), Expect = 9e-06
Identities = 31/112 (27%), Positives = 50/112 (44%), Gaps = 10/112 (8%)
Query: 291 QELDLSGNSFLGGQLSRNLGKLCNLRTMILSRNNISSEVSDFLDGLSECTNSILLEKLEL 350
EL L GN F + + L +L + LS N IS+ + +++ L L L
Sbjct: 34 TELYLDGNQF--TLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQ------LLTLIL 85
Query: 351 RFNQFTGILPISLGSLKNLRHLVLWQNSFLGSIPPSI-GNLTLLKELYLASN 401
+N+ I P + LK+LR L L N + +P +L+ L L + +N
Sbjct: 86 SYNRLRCIPPRTFDGLKSLRLLSLHGND-ISVVPEGAFNDLSALSHLAIGAN 136
|
| >2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens} Length = 193 | Back alignment and structure |
|---|
Score = 41.1 bits (97), Expect = 3e-04
Identities = 19/84 (22%), Positives = 30/84 (35%), Gaps = 9/84 (10%)
Query: 320 LSRNNISSEVSDFLDGLSECTNSILLEKLELRFNQFTGILPISLGSLKNLRHLVLWQNSF 379
L N + + L ++L N+ + + S ++ L L+L N
Sbjct: 38 LDGNQFTLVPKEL-SNYKH------LTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNR- 89
Query: 380 LGSIPPSI-GNLTLLKELYLASNQ 402
L IPP L L+ L L N
Sbjct: 90 LRCIPPRTFDGLKSLRLLSLHGND 113
|
| >2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens} Length = 193 | Back alignment and structure |
|---|
Score = 41.1 bits (97), Expect = 4e-04
Identities = 18/58 (31%), Positives = 30/58 (51%), Gaps = 3/58 (5%)
Query: 346 EKLELRFNQFTGILPISLGSLKNLRHLVLWQNSFLGSIPPSI-GNLTLLKELYLASNQ 402
+L L NQFT ++P L + K+L + L N + ++ N+T L L L+ N+
Sbjct: 34 TELYLDGNQFT-LVPKELSNYKHLTLIDLSNNR-ISTLSNQSFSNMTQLLTLILSYNR 89
|
| >2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri} Length = 177 | Back alignment and structure |
|---|
Score = 46.1 bits (110), Expect = 5e-06
Identities = 34/92 (36%), Positives = 46/92 (50%), Gaps = 7/92 (7%)
Query: 210 VFNKLHSFVELHLPNCNLPSLPLS-FPSLNFASLQVLDLSNNDFNSTTPHWLF-NITSLL 267
VF+KL +L L + SLP F L L +L L N S P+ +F +T L
Sbjct: 47 VFDKLTQLTKLSLSQNQIQSLPDGVFDKL--TKLTILYLHENKLQSL-PNGVFDKLTQLK 103
Query: 268 CLDLGSNDLQGDIPDG-FASLNSLQELDLSGN 298
L L +N L+ +PDG F L SLQ++ L N
Sbjct: 104 ELALDTNQLKS-VPDGIFDRLTSLQKIWLHTN 134
|
| >2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri} Length = 177 | Back alignment and structure |
|---|
Score = 40.3 bits (95), Expect = 5e-04
Identities = 19/59 (32%), Positives = 27/59 (45%), Gaps = 2/59 (3%)
Query: 346 EKLELRFNQFTGILPISLGSLKNLRHLVLWQNSFLGSIPPSI-GNLTLLKELYLASNQM 403
+LEL N+ + L L L L QN + S+P + LT L LYL N++
Sbjct: 31 TRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQ-IQSLPDGVFDKLTKLTILYLHENKL 88
|
| >2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis} Length = 362 | Back alignment and structure |
|---|
Score = 46.1 bits (108), Expect = 2e-05
Identities = 30/200 (15%), Positives = 68/200 (34%), Gaps = 17/200 (8%)
Query: 146 SGSFFSGTIPQTLGNLSNLLYLDLNNFLDQSNQIDLEWLSGLSSLVYFNLGGADLSKAGA 205
S + I + ++ L + + +I LS ++ +L G
Sbjct: 123 DCSDIADGIVENKEKFAHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGT 182
Query: 206 YWLEVFNKLHSFVE-LHLPNCNLPSLPL-SFPSLNFASLQVLDL---SNNDFNSTTPHWL 260
L + K ++ L + + LP + + +L+ L L + +
Sbjct: 183 NNLSIGKKPRPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVF 242
Query: 261 FNI------TSLLCLDLGSNDLQGDIPDGFAS---LNSLQELDLSGNSFL---GGQLSRN 308
+ +L L + + Q + + F L L+ +D+S L +
Sbjct: 243 RPLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDH 302
Query: 309 LGKLCNLRTMILSRNNISSE 328
+ K+ +L+ + + N +S E
Sbjct: 303 VDKIKHLKFINMKYNYLSDE 322
|
| >2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus} Length = 174 | Back alignment and structure |
|---|
Score = 40.3 bits (95), Expect = 5e-04
Identities = 20/58 (34%), Positives = 27/58 (46%), Gaps = 2/58 (3%)
Query: 346 EKLELRFNQFTGILPISLGSLKNLRHLVLWQNSFLGSIPPSI-GNLTLLKELYLASNQ 402
++L L NQ T + P L NL+ L N L +IP + LT L +L L N
Sbjct: 36 QRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNK-LTAIPTGVFDKLTQLTQLDLNDNH 92
|
| >3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D Length = 170 | Back alignment and structure |
|---|
Score = 39.9 bits (94), Expect = 6e-04
Identities = 20/58 (34%), Positives = 25/58 (43%), Gaps = 2/58 (3%)
Query: 346 EKLELRFNQFTGILPISLGSLKNLRHLVLWQNSFLGSIPPSI-GNLTLLKELYLASNQ 402
+ L L NQ T + P L L L L N L +P + LT L +L L NQ
Sbjct: 33 QVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQ-LTVLPAGVFDKLTQLTQLSLNDNQ 89
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 598 | |||
| 3rgz_A | 768 | Protein brassinosteroid insensitive 1; phytohormon | 100.0 | |
| 3rgz_A | 768 | Protein brassinosteroid insensitive 1; phytohormon | 100.0 | |
| 3t6q_A | 606 | CD180 antigen; protein-protein complex, leucine ri | 100.0 | |
| 4eco_A | 636 | Uncharacterized protein; leucine-rich repeats, pro | 100.0 | |
| 4ecn_A | 876 | Leucine-rich repeat protein; leucine-rich repeats, | 100.0 | |
| 3t6q_A | 606 | CD180 antigen; protein-protein complex, leucine ri | 100.0 | |
| 1ziw_A | 680 | TOLL-like receptor 3; innate immunity, immune syst | 100.0 | |
| 3vq2_A | 606 | TLR4, TOLL-like receptor 4; leucine rich repeat MD | 100.0 | |
| 3j0a_A | 844 | TOLL-like receptor 5; membrane protein, leucine-ri | 100.0 | |
| 1ziw_A | 680 | TOLL-like receptor 3; innate immunity, immune syst | 100.0 | |
| 2z81_A | 549 | CD282 antigen, TOLL-like receptor 2, variable lymp | 100.0 | |
| 3vq2_A | 606 | TLR4, TOLL-like receptor 4; leucine rich repeat MD | 100.0 | |
| 2z63_A | 570 | TOLL-like receptor 4, variable lymphocyte recepto; | 100.0 | |
| 3j0a_A | 844 | TOLL-like receptor 5; membrane protein, leucine-ri | 100.0 | |
| 2z63_A | 570 | TOLL-like receptor 4, variable lymphocyte recepto; | 100.0 | |
| 2z7x_B | 520 | TOLL-like receptor 1, variable lymphocyte recepto; | 100.0 | |
| 2z7x_B | 520 | TOLL-like receptor 1, variable lymphocyte recepto; | 100.0 | |
| 2z81_A | 549 | CD282 antigen, TOLL-like receptor 2, variable lymp | 100.0 | |
| 4eco_A | 636 | Uncharacterized protein; leucine-rich repeats, pro | 100.0 | |
| 3a79_B | 562 | TLR6, VLRB.59, TOLL-like receptor 6, variable lymp | 100.0 | |
| 4g8a_A | 635 | TOLL-like receptor 4; leucine rich repeat MD-2 rel | 100.0 | |
| 1jl5_A | 454 | Outer protein YOPM; leucine-rich repeat, molecular | 100.0 | |
| 4ecn_A | 876 | Leucine-rich repeat protein; leucine-rich repeats, | 100.0 | |
| 3a79_B | 562 | TLR6, VLRB.59, TOLL-like receptor 6, variable lymp | 100.0 | |
| 4g8a_A | 635 | TOLL-like receptor 4; leucine rich repeat MD-2 rel | 100.0 | |
| 1ogq_A | 313 | PGIP-2, polygalacturonase inhibiting protein; inhi | 100.0 | |
| 1jl5_A | 454 | Outer protein YOPM; leucine-rich repeat, molecular | 100.0 | |
| 3v47_A | 455 | TOLL-like receptor 5B and variable lymphocyte REC | 100.0 | |
| 3v47_A | 455 | TOLL-like receptor 5B and variable lymphocyte REC | 100.0 | |
| 3bz5_A | 457 | Internalin-J, INLJ; leucine rich repeat (LRR), cys | 100.0 | |
| 3bz5_A | 457 | Internalin-J, INLJ; leucine rich repeat (LRR), cys | 100.0 | |
| 1o6v_A | 466 | Internalin A; bacterial infection, extracellular r | 100.0 | |
| 1o6v_A | 466 | Internalin A; bacterial infection, extracellular r | 100.0 | |
| 2id5_A | 477 | Lingo-1, leucine rich repeat neuronal 6A; CNS-spec | 100.0 | |
| 2id5_A | 477 | Lingo-1, leucine rich repeat neuronal 6A; CNS-spec | 100.0 | |
| 3o6n_A | 390 | APL1; leucine-rich repeat, protein binding; HET: N | 100.0 | |
| 3o6n_A | 390 | APL1; leucine-rich repeat, protein binding; HET: N | 100.0 | |
| 4fmz_A | 347 | Internalin; leucine rich repeat, structural genomi | 100.0 | |
| 3oja_B | 597 | Anopheles plasmodium-responsive leucine-rich REPE | 100.0 | |
| 4fmz_A | 347 | Internalin; leucine rich repeat, structural genomi | 100.0 | |
| 3oja_B | 597 | Anopheles plasmodium-responsive leucine-rich REPE | 100.0 | |
| 1z7x_W | 461 | Ribonuclease inhibitor; leucine-rich repeat, enzym | 100.0 | |
| 4fcg_A | 328 | Uncharacterized protein; structural genomics, PSI- | 99.97 | |
| 1ogq_A | 313 | PGIP-2, polygalacturonase inhibiting protein; inhi | 99.97 | |
| 1z7x_W | 461 | Ribonuclease inhibitor; leucine-rich repeat, enzym | 99.97 | |
| 3ogk_B | 592 | Coronatine-insensitive protein 1; leucine rich rep | 99.97 | |
| 1xku_A | 330 | Decorin; proteoglycan, leucine-rich repeat, struct | 99.97 | |
| 2ft3_A | 332 | Biglycan; proteoglycan, dimer interface, structura | 99.97 | |
| 1xku_A | 330 | Decorin; proteoglycan, leucine-rich repeat, struct | 99.97 | |
| 2ft3_A | 332 | Biglycan; proteoglycan, dimer interface, structura | 99.97 | |
| 3ogk_B | 592 | Coronatine-insensitive protein 1; leucine rich rep | 99.96 | |
| 2p1m_B | 594 | Transport inhibitor response 1 protein; F-BOX, leu | 99.95 | |
| 2z80_A | 353 | TOLL-like receptor 2, variable lymphocyte recepto; | 99.95 | |
| 2z80_A | 353 | TOLL-like receptor 2, variable lymphocyte recepto; | 99.95 | |
| 2z66_A | 306 | Variable lymphocyte receptor B, TOLL-like recepto; | 99.95 | |
| 3g06_A | 622 | SSPH2 (leucine-rich repeat protein); E3 ubiquitin | 99.95 | |
| 2z66_A | 306 | Variable lymphocyte receptor B, TOLL-like recepto; | 99.94 | |
| 4fcg_A | 328 | Uncharacterized protein; structural genomics, PSI- | 99.94 | |
| 3o53_A | 317 | Protein LRIM1, AGAP006348-PA; leucine-rich repeat, | 99.94 | |
| 3zyi_A | 452 | Leucine-rich repeat-containing protein 4; cell adh | 99.94 | |
| 3g06_A | 622 | SSPH2 (leucine-rich repeat protein); E3 ubiquitin | 99.94 | |
| 3zyj_A | 440 | Leucine-rich repeat-containing protein 4C; cell ad | 99.94 | |
| 1wwl_A | 312 | Monocyte differentiation antigen CD14; LPS, immune | 99.93 | |
| 3zyj_A | 440 | Leucine-rich repeat-containing protein 4C; cell ad | 99.93 | |
| 3zyi_A | 452 | Leucine-rich repeat-containing protein 4; cell adh | 99.93 | |
| 3o53_A | 317 | Protein LRIM1, AGAP006348-PA; leucine-rich repeat, | 99.93 | |
| 2p1m_B | 594 | Transport inhibitor response 1 protein; F-BOX, leu | 99.93 | |
| 1ozn_A | 285 | Reticulon 4 receptor; NOGO receptor, MAD, myelinat | 99.93 | |
| 1ozn_A | 285 | Reticulon 4 receptor; NOGO receptor, MAD, myelinat | 99.93 | |
| 1wwl_A | 312 | Monocyte differentiation antigen CD14; LPS, immune | 99.93 | |
| 3oja_A | 487 | Leucine-rich immune molecule 1; coiled-coil, helix | 99.92 | |
| 3oja_A | 487 | Leucine-rich immune molecule 1; coiled-coil, helix | 99.92 | |
| 2o6q_A | 270 | Variable lymphocyte receptor A; leucine-rich repea | 99.92 | |
| 3goz_A | 362 | Leucine-rich repeat-containing protein; LEGL7, NES | 99.9 | |
| 3goz_A | 362 | Leucine-rich repeat-containing protein; LEGL7, NES | 99.9 | |
| 2ast_B | 336 | S-phase kinase-associated protein 2; SCF-substrate | 99.89 | |
| 3rfs_A | 272 | Internalin B, repeat modules, variable lymphocyte | 99.89 | |
| 2z62_A | 276 | TOLL-like receptor 4, variable lymphocyte recepto; | 99.88 | |
| 2z62_A | 276 | TOLL-like receptor 4, variable lymphocyte recepto; | 99.88 | |
| 2ca6_A | 386 | RAN GTPase-activating protein 1; GAP, GTPase activ | 99.88 | |
| 2ca6_A | 386 | RAN GTPase-activating protein 1; GAP, GTPase activ | 99.88 | |
| 3rfs_A | 272 | Internalin B, repeat modules, variable lymphocyte | 99.88 | |
| 1p9a_G | 290 | Platelet glycoprotein IB alpha chain precursor; pl | 99.88 | |
| 2o6q_A | 270 | Variable lymphocyte receptor A; leucine-rich repea | 99.87 | |
| 2ast_B | 336 | S-phase kinase-associated protein 2; SCF-substrate | 99.87 | |
| 4glp_A | 310 | Monocyte differentiation antigen CD14; alpha beta | 99.87 | |
| 4glp_A | 310 | Monocyte differentiation antigen CD14; alpha beta | 99.87 | |
| 1p9a_G | 290 | Platelet glycoprotein IB alpha chain precursor; pl | 99.86 | |
| 3m19_A | 251 | Variable lymphocyte receptor A diversity region; a | 99.86 | |
| 1h6u_A | 308 | Internalin H; cell adhesion, leucine rich repeat, | 99.85 | |
| 2xwt_C | 239 | Thyrotropin receptor; signaling protein-immune sys | 99.84 | |
| 3m19_A | 251 | Variable lymphocyte receptor A diversity region; a | 99.83 | |
| 1h6u_A | 308 | Internalin H; cell adhesion, leucine rich repeat, | 99.83 | |
| 3cvr_A | 571 | Invasion plasmid antigen; leucine rich repeat and | 99.82 | |
| 2xwt_C | 239 | Thyrotropin receptor; signaling protein-immune sys | 99.82 | |
| 2o6s_A | 208 | Variable lymphocyte receptor B; leucine-rich repea | 99.8 | |
| 4ay9_X | 350 | Follicle-stimulating hormone receptor; hormone-rec | 99.8 | |
| 3cvr_A | 571 | Invasion plasmid antigen; leucine rich repeat and | 99.79 | |
| 4ay9_X | 350 | Follicle-stimulating hormone receptor; hormone-rec | 99.76 | |
| 2o6s_A | 208 | Variable lymphocyte receptor B; leucine-rich repea | 99.76 | |
| 2v70_A | 220 | SLIT-2, SLIT homolog 2 protein N-product; neurogen | 99.75 | |
| 3e6j_A | 229 | Variable lymphocyte receptor diversity region; var | 99.75 | |
| 1m9s_A | 605 | Internalin B; cell invasion, GW domains, SH3 domai | 99.75 | |
| 1h6t_A | 291 | Internalin B; cell adhesion, leucine rich repeat, | 99.74 | |
| 1h6t_A | 291 | Internalin B; cell adhesion, leucine rich repeat, | 99.73 | |
| 1m9s_A | 605 | Internalin B; cell invasion, GW domains, SH3 domai | 99.7 | |
| 2xot_A | 361 | Amphoterin-induced protein 1; cell adhesion, neuro | 99.69 | |
| 2v70_A | 220 | SLIT-2, SLIT homolog 2 protein N-product; neurogen | 99.69 | |
| 2v9t_B | 220 | SLIT homolog 2 protein N-product; structural prote | 99.69 | |
| 2xot_A | 361 | Amphoterin-induced protein 1; cell adhesion, neuro | 99.68 | |
| 2v9t_B | 220 | SLIT homolog 2 protein N-product; structural prote | 99.68 | |
| 1dce_A | 567 | Protein (RAB geranylgeranyltransferase alpha subun | 99.68 | |
| 4ezg_A | 197 | Putative uncharacterized protein; internalin-A, le | 99.67 | |
| 1dce_A | 567 | Protein (RAB geranylgeranyltransferase alpha subun | 99.66 | |
| 4ezg_A | 197 | Putative uncharacterized protein; internalin-A, le | 99.66 | |
| 1w8a_A | 192 | SLIT protein; signaling protein, secreted protein, | 99.66 | |
| 1xeu_A | 263 | Internalin C; cellular invasion, leucine-rich repe | 99.66 | |
| 1xeu_A | 263 | Internalin C; cellular invasion, leucine-rich repe | 99.66 | |
| 3e6j_A | 229 | Variable lymphocyte receptor diversity region; var | 99.65 | |
| 4b8c_D | 727 | Glucose-repressible alcohol dehydrogenase transcr | 99.65 | |
| 2ell_A | 168 | Acidic leucine-rich nuclear phosphoprotein 32 FAM | 99.61 | |
| 4b8c_D | 727 | Glucose-repressible alcohol dehydrogenase transcr | 99.58 | |
| 3sb4_A | 329 | Hypothetical leucine rich repeat protein; LRR, rig | 99.57 | |
| 3sb4_A | 329 | Hypothetical leucine rich repeat protein; LRR, rig | 99.56 | |
| 1w8a_A | 192 | SLIT protein; signaling protein, secreted protein, | 99.56 | |
| 2je0_A | 149 | Acidic leucine-rich nuclear phosphoprotein 32 FAM | 99.56 | |
| 2ell_A | 168 | Acidic leucine-rich nuclear phosphoprotein 32 FAM | 99.54 | |
| 2o6r_A | 177 | Variable lymphocyte receptor B; leucine-rich repea | 99.54 | |
| 2wfh_A | 193 | SLIT homolog 2 protein C-product; developmental pr | 99.53 | |
| 2je0_A | 149 | Acidic leucine-rich nuclear phosphoprotein 32 FAM | 99.53 | |
| 2wfh_A | 193 | SLIT homolog 2 protein C-product; developmental pr | 99.51 | |
| 3g39_A | 170 | Variable lymphocyte receptor VLRB.2D; antibody, X- | 99.48 | |
| 1a9n_A | 176 | U2A', U2A'; complex (nuclear protein/RNA), RNA, sn | 99.46 | |
| 2o6r_A | 177 | Variable lymphocyte receptor B; leucine-rich repea | 99.45 | |
| 4fdw_A | 401 | Leucine rich hypothetical protein; putative cell s | 99.45 | |
| 2r9u_A | 174 | Variable lymphocyte receptor; adaptive immunity, V | 99.44 | |
| 1ds9_A | 198 | Outer arm dynein; leucine-rich repeat, beta-BETA-a | 99.42 | |
| 4fdw_A | 401 | Leucine rich hypothetical protein; putative cell s | 99.42 | |
| 4fs7_A | 394 | Uncharacterized protein; leucine-rich repeats, pro | 99.37 | |
| 1a9n_A | 176 | U2A', U2A'; complex (nuclear protein/RNA), RNA, sn | 99.36 | |
| 1ds9_A | 198 | Outer arm dynein; leucine-rich repeat, beta-BETA-a | 99.35 | |
| 4fs7_A | 394 | Uncharacterized protein; leucine-rich repeats, pro | 99.33 | |
| 3g39_A | 170 | Variable lymphocyte receptor VLRB.2D; antibody, X- | 99.28 | |
| 3un9_A | 372 | NLR family member X1; leucine rich repeat (LRR), a | 99.27 | |
| 3un9_A | 372 | NLR family member X1; leucine rich repeat (LRR), a | 99.27 | |
| 2r9u_A | 174 | Variable lymphocyte receptor; adaptive immunity, V | 99.25 | |
| 2ifg_A | 347 | High affinity nerve growth factor receptor; TRK, T | 99.12 | |
| 2ifg_A | 347 | High affinity nerve growth factor receptor; TRK, T | 99.08 | |
| 4gt6_A | 394 | Cell surface protein; leucine rich repeats, putati | 99.08 | |
| 2ra8_A | 362 | Uncharacterized protein Q64V53_bacfr; WGR domain, | 99.0 | |
| 4gt6_A | 394 | Cell surface protein; leucine rich repeats, putati | 98.96 | |
| 2ra8_A | 362 | Uncharacterized protein Q64V53_bacfr; WGR domain, | 98.8 | |
| 4h09_A | 379 | Hypothetical leucine rich repeat protein; two LRR_ | 98.62 | |
| 4h09_A | 379 | Hypothetical leucine rich repeat protein; two LRR_ | 98.6 | |
| 1io0_A | 185 | Tropomodulin; LRR protein, right-handed super-heli | 98.5 | |
| 1io0_A | 185 | Tropomodulin; LRR protein, right-handed super-heli | 98.49 | |
| 3rw6_A | 267 | Nuclear RNA export factor 1; retroviral constituti | 98.42 | |
| 3rw6_A | 267 | Nuclear RNA export factor 1; retroviral constituti | 98.3 | |
| 3e4g_A | 176 | ATP synthase subunit S, mitochondrial; leucine-ric | 98.17 | |
| 3e4g_A | 176 | ATP synthase subunit S, mitochondrial; leucine-ric | 98.04 | |
| 1pgv_A | 197 | TMD-1, tropomodulin TMD-1; structural genomics, PS | 97.63 | |
| 1pgv_A | 197 | TMD-1, tropomodulin TMD-1; structural genomics, PS | 97.42 | |
| 3rfe_A | 130 | Platelet glycoprotein IB beta chain; platelet surf | 97.05 | |
| 3rfe_A | 130 | Platelet glycoprotein IB beta chain; platelet surf | 96.64 |
| >3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.8e-69 Score=600.49 Aligned_cols=551 Identities=27% Similarity=0.378 Sum_probs=401.4
Q ss_pred CCCHHHHHHHHHHHhcCCCCCCCCCCC-CCCCCCCcccEEecCCCCcEEEEEcCCCCCCCC-------------------
Q 037325 31 GCQEAERKALLQFKQSLRDPSGQLSSW-VGEDCCSWSGVSCNNRTASVIKLNLNNPFRDSF------------------- 90 (598)
Q Consensus 31 ~~~~~~~~~l~~~~~~~~~~~~~~~~W-~~~~~c~w~gv~c~~~~~~v~~L~L~~~~~~~~------------------- 90 (598)
.+.++|++||++||+++.||. .+.+| .+.|||.|+||+|+ .++|+.|||++....+.
T Consensus 8 ~~~~~~~~all~~k~~~~~~~-~l~~W~~~~~~C~w~gv~C~--~~~v~~L~L~~~~l~g~~~~l~~~l~~L~~L~~l~~ 84 (768)
T 3rgz_A 8 QSLYREIHQLISFKDVLPDKN-LLPDWSSNKNPCTFDGVTCR--DDKVTSIDLSSKPLNVGFSAVSSSLLSLTGLESLFL 84 (768)
T ss_dssp CCHHHHHHHHHHHHTTCSCTT-SSTTCCTTSCGGGSTTEEEE--TTEEEEEECTTSCCCEEHHHHHHHTTTCTTCCEEEC
T ss_pred cCCHHHHHHHHHHHhhCCCcc-cccCCCCCCCCcCCcceEEC--CCcEEEEECCCCCcCCccCccChhHhccCcccccCC
Confidence 356889999999999999888 89999 57899999999998 68999999987542211
Q ss_pred -----------------CCcccCCCCCcceecCc--cccCCCCCCEEeCCCCCCCCCCcchhc-cCCCCCCEEECcCCCC
Q 037325 91 -----------------GSFEDDAGHELGGEISP--SLLQLKDLEYLDLSMNNFTGFQVPEFI-GSLKELRYLNLSGSFF 150 (598)
Q Consensus 91 -----------------~~~~~~~~~~l~~~~~~--~l~~l~~L~~L~Ls~n~l~~~~~p~~~-~~l~~L~~L~L~~n~l 150 (598)
.+..++..+.+.|.+|. .++++++|++|+|++|.+.+. .|..+ .++++|++|++++|++
T Consensus 85 ~~~~~~~l~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~-~~~~~~~~l~~L~~L~Ls~n~l 163 (768)
T 3rgz_A 85 SNSHINGSVSGFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFP-GKVSGGLKLNSLEVLDLSANSI 163 (768)
T ss_dssp TTSCEEECCCCCCCCTTCCEEECCSSEEEEEGGGGGGGGGCTTCCEEECCSSEEECC-SSCCSCCCCTTCSEEECCSSCC
T ss_pred cCCCcCCCchhhccCCCCCEEECCCCcCCCcCCChHHHhCCCCCCEEECcCCccCCc-CCHHHhccCCCCCEEECCCCcc
Confidence 11223445666666666 677777777777777776654 44443 5666777777777776
Q ss_pred Ccccchh---ccCCCCCCEEEccCCCCCCCcc-------------------ChhhhcCCCCCcEEEcCCCCCCCCcccch
Q 037325 151 SGTIPQT---LGNLSNLLYLDLNNFLDQSNQI-------------------DLEWLSGLSSLVYFNLGGADLSKAGAYWL 208 (598)
Q Consensus 151 ~~~~p~~---l~~l~~L~~L~L~~n~~~~~~~-------------------~~~~~~~l~~L~~L~l~~n~~~~~~~~~~ 208 (598)
++..|.. +.++++|++|++++|.+..... ....+.++++|++|++++|.+.+.. +
T Consensus 164 ~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~l~~L~~L~Ls~n~l~~~~~~l~~l~~L~~L~Ls~n~l~~~~---~ 240 (768)
T 3rgz_A 164 SGANVVGWVLSDGCGELKHLAISGNKISGDVDVSRCVNLEFLDVSSNNFSTGIPFLGDCSALQHLDISGNKLSGDF---S 240 (768)
T ss_dssp EEETHHHHHHTTCCTTCCEEECCSSEEESCCBCTTCTTCCEEECCSSCCCSCCCBCTTCCSCCEEECCSSCCCSCH---H
T ss_pred CCcCChhhhhhccCCCCCEEECCCCcccccCCcccCCcCCEEECcCCcCCCCCcccccCCCCCEEECcCCcCCCcc---c
Confidence 6555554 4444444444444443211110 0111566677777777777776554 5
Q ss_pred HhhhcCCCCCEEEcCCCCCCCCCCCCCcCCCCCccEEEccCCCCCCCcchhhhcC-CCCCEEEccCCcccccCCccccCC
Q 037325 209 EVFNKLHSFVELHLPNCNLPSLPLSFPSLNFASLQVLDLSNNDFNSTTPHWLFNI-TSLLCLDLGSNDLQGDIPDGFASL 287 (598)
Q Consensus 209 ~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l-~~L~~L~l~~n~l~~~~~~~l~~l 287 (598)
..+..+++|++|++++|.+++..+.. .+++|++|++++|++++.+|..+... ++|++|++++|.+++.+|..++.+
T Consensus 241 ~~l~~l~~L~~L~Ls~n~l~~~~~~~---~l~~L~~L~L~~n~l~~~ip~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l 317 (768)
T 3rgz_A 241 RAISTCTELKLLNISSNQFVGPIPPL---PLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSC 317 (768)
T ss_dssp HHTTTCSSCCEEECCSSCCEESCCCC---CCTTCCEEECCSSEEEESCCCCSCTTCTTCSEEECCSSEEEECCCGGGGGC
T ss_pred HHHhcCCCCCEEECCCCcccCccCcc---ccCCCCEEECcCCccCCccCHHHHhhcCcCCEEECcCCcCCCccchHHhcC
Confidence 67777888888888888776554422 56677777777777766666666554 777777777777777777777777
Q ss_pred CCccEEECcCCCcCccccchh-hcCCCCCCEEecccccCCcccchhhhCCC-C------------------CC--CCCCc
Q 037325 288 NSLQELDLSGNSFLGGQLSRN-LGKLCNLRTMILSRNNISSEVSDFLDGLS-E------------------CT--NSILL 345 (598)
Q Consensus 288 ~~L~~L~l~~n~~~~~~~~~~-l~~l~~L~~L~l~~n~l~~~~~~~~~~l~-~------------------~~--~~~~L 345 (598)
++|++|++++|. +.+.+|.. +..+++|++|++++|.+.+..|..+..+. . .. ..++|
T Consensus 318 ~~L~~L~L~~n~-l~~~ip~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~L 396 (768)
T 3rgz_A 318 SLLESLALSSNN-FSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTL 396 (768)
T ss_dssp TTCCEEECCSSE-EEEECCHHHHTTCTTCCEEECCSSEEEECCCTTHHHHTTTCSEEECCSSEEEEECCTTTTCSTTCCC
T ss_pred CCccEEECCCCc-ccCcCCHHHHhcCCCCCEEeCcCCccCccccHHHHhhhcCCcEEEccCCCcCCCcChhhhhcccCCc
Confidence 777777777777 44455544 67777777777777777665555443322 0 00 03368
Q ss_pred cEEEccCccccccCccccCCCCCCCEEEccCCcCCccchhhccCCCCCCEEeCcCCcCCcccCCCchhhhcCCCCCCEEE
Q 037325 346 EKLELRFNQFTGILPISLGSLKNLRHLVLWQNSFLGSIPPSIGNLTLLKELYLASNQMNGQKISDSYQHLKNQTELRTLV 425 (598)
Q Consensus 346 ~~L~Ls~n~l~~~~~~~l~~l~~L~~L~ls~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~~~~L~~L~ 425 (598)
++|++++|.+++.+|..+..+++|++|++++|++++.+|..+..+++|++|++++|.+++.. |. .+..+++|+.|+
T Consensus 397 ~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~-p~---~~~~l~~L~~L~ 472 (768)
T 3rgz_A 397 QELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEI-PQ---ELMYVKTLETLI 472 (768)
T ss_dssp CEEECCSSEEEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCCSCC-CG---GGGGCTTCCEEE
T ss_pred cEEECCCCccccccCHHHhcCCCCCEEECcCCcccCcccHHHhcCCCCCEEECCCCcccCcC-CH---HHcCCCCceEEE
Confidence 88888888888888888888888888888888888888888888888888888888888766 53 356778888888
Q ss_pred ccCccCccccchHHHhcCCCCCEEEccCCcCcccCCCCcccC-CCCEEEcccCcCcccCCCC---CcCCcEEEccCCccc
Q 037325 426 LNKARISDTISDWFWQLSLTLDELDVAYNELRGRVPNSLGFN-FPAKVDLSFNNFEGRLLLW---SFNVTKLYLRDNSFS 501 (598)
Q Consensus 426 l~~n~l~~~~~~~~~~~~~~L~~L~ls~n~~~~~~p~~~~~~-~L~~l~ls~n~l~~~~~~~---~~~L~~L~ls~n~l~ 501 (598)
+++|++++.+|..+.. +++|++|++++|++++.+|.++... .|+.|++++|++.|.+|.. +++|++||+++|+++
T Consensus 473 L~~N~l~~~~p~~l~~-l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~ 551 (768)
T 3rgz_A 473 LDFNDLTGEIPSGLSN-CTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFN 551 (768)
T ss_dssp CCSSCCCSCCCGGGGG-CTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECCGGGGGCTTCCEEECCSSEEE
T ss_pred ecCCcccCcCCHHHhc-CCCCCEEEccCCccCCcCChHHhcCCCCCEEECCCCcccCcCCHHHcCCCCCCEEECCCCccC
Confidence 8888888888887765 7888889999888888888888776 8888889988888888765 577888889988888
Q ss_pred ccCCchhhccc-----------------------------------------------------------CCCC-Ccccc
Q 037325 502 GLIPNDIGQNL-----------------------------------------------------------PFLT-DLGNL 521 (598)
Q Consensus 502 ~~~p~~~~~~~-----------------------------------------------------------~~~~-~~~~l 521 (598)
|.+|..++... +.+| .+..+
T Consensus 552 g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l 631 (768)
T 3rgz_A 552 GTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNN 631 (768)
T ss_dssp SBCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSS
T ss_pred CcCChHHhcccchhhhhccccccccccccccccccccccccccccccccchhhhccccccccccccceecccCchhhhcc
Confidence 88887765421 0111 23456
Q ss_pred CCCCeEeCcCCccccccchhccCCCCCCEEECCCCcCccccchhccCCCCCCEEEccCCCCcccCCcCccCcCCCC
Q 037325 522 KQLITLVISNNNLSGEIPLLFSNISFLYILDMSNNSLSGSTPESIGSLRTVKFLVLRNNYLSGKLPLSLKNCTFQE 597 (598)
Q Consensus 522 ~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~l~~l~~L~~L~l~~n~l~g~~P~~~~~~~~L~ 597 (598)
++|+.|||++|+++|.+|..|+++++|++|+|++|+++|.+|..++++++|++||+++|+++|.+|..+.++++|+
T Consensus 632 ~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~l~~l~~L~ 707 (768)
T 3rgz_A 632 GSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLT 707 (768)
T ss_dssp BCCCEEECCSSCCBSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEECCCGGGGGCCCCS
T ss_pred ccccEEECcCCcccccCCHHHhccccCCEEeCcCCccCCCCChHHhCCCCCCEEECCCCcccCcCChHHhCCCCCC
Confidence 7788888888888888888888888888888888888888888888888888888888888888888888887765
|
| >3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.2e-59 Score=519.64 Aligned_cols=448 Identities=30% Similarity=0.448 Sum_probs=317.8
Q ss_pred cCCCCCCEEeCCCCCCCCCCcchhccCCCCCCEEECcCCCCCcccchhccCCCCCCEEEccCCCCCCCccChhhhcCCCC
Q 037325 110 LQLKDLEYLDLSMNNFTGFQVPEFIGSLKELRYLNLSGSFFSGTIPQTLGNLSNLLYLDLNNFLDQSNQIDLEWLSGLSS 189 (598)
Q Consensus 110 ~~l~~L~~L~Ls~n~l~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~~l~~ 189 (598)
..+++|++|++++|.+.+. +|. +.++++|++|++++|.+++.+|..++.+++|++|++++|.+...... ..+++
T Consensus 197 ~~l~~L~~L~Ls~n~l~~~-~~~-l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~----~~l~~ 270 (768)
T 3rgz_A 197 SRCVNLEFLDVSSNNFSTG-IPF-LGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPP----LPLKS 270 (768)
T ss_dssp TTCTTCCEEECCSSCCCSC-CCB-CTTCCSCCEEECCSSCCCSCHHHHTTTCSSCCEEECCSSCCEESCCC----CCCTT
T ss_pred ccCCcCCEEECcCCcCCCC-Ccc-cccCCCCCEEECcCCcCCCcccHHHhcCCCCCEEECCCCcccCccCc----cccCC
Confidence 4455555555555555543 343 55555555555555555555555555555555555555544322111 14455
Q ss_pred CcEEEcCCCCCCCCcccchHhhhc-CCCCCEEEcCCCCCCCCCCCCCcCCCCCccEEEccCCCCCCCcchh-hhcCCCCC
Q 037325 190 LVYFNLGGADLSKAGAYWLEVFNK-LHSFVELHLPNCNLPSLPLSFPSLNFASLQVLDLSNNDFNSTTPHW-LFNITSLL 267 (598)
Q Consensus 190 L~~L~l~~n~~~~~~~~~~~~~~~-l~~L~~L~l~~~~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~-l~~l~~L~ 267 (598)
|++|++++|.+.+.. +..+.. +++|++|++++|.+++..+ ..+..+++|++|++++|.+++.+|.. +.++++|+
T Consensus 271 L~~L~L~~n~l~~~i---p~~~~~~~~~L~~L~Ls~n~l~~~~p-~~~~~l~~L~~L~L~~n~l~~~ip~~~l~~l~~L~ 346 (768)
T 3rgz_A 271 LQYLSLAENKFTGEI---PDFLSGACDTLTGLDLSGNHFYGAVP-PFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLK 346 (768)
T ss_dssp CCEEECCSSEEEESC---CCCSCTTCTTCSEEECCSSEEEECCC-GGGGGCTTCCEEECCSSEEEEECCHHHHTTCTTCC
T ss_pred CCEEECcCCccCCcc---CHHHHhhcCcCCEEECcCCcCCCccc-hHHhcCCCccEEECCCCcccCcCCHHHHhcCCCCC
Confidence 555555555554332 223322 2555555555555554443 34445555555555555555444443 55555555
Q ss_pred EEEccCCcccccCCccccCCC-CccEEECcCCCcCccccchhhcC--CCCCCEEecccccCCcccchhhhCCCCCCCCCC
Q 037325 268 CLDLGSNDLQGDIPDGFASLN-SLQELDLSGNSFLGGQLSRNLGK--LCNLRTMILSRNNISSEVSDFLDGLSECTNSIL 344 (598)
Q Consensus 268 ~L~l~~n~l~~~~~~~l~~l~-~L~~L~l~~n~~~~~~~~~~l~~--l~~L~~L~l~~n~l~~~~~~~~~~l~~~~~~~~ 344 (598)
+|++++|.+++.+|..+..++ +|++|++++|. +.+.+|..+.. +++|++|++++|.+++..|..+..++ +
T Consensus 347 ~L~Ls~n~l~~~~p~~l~~l~~~L~~L~Ls~N~-l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~------~ 419 (768)
T 3rgz_A 347 VLDLSFNEFSGELPESLTNLSASLLTLDLSSNN-FSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCS------E 419 (768)
T ss_dssp EEECCSSEEEECCCTTHHHHTTTCSEEECCSSE-EEEECCTTTTCSTTCCCCEEECCSSEEEEECCGGGGGCT------T
T ss_pred EEeCcCCccCccccHHHHhhhcCCcEEEccCCC-cCCCcChhhhhcccCCccEEECCCCccccccCHHHhcCC------C
Confidence 555555555555555555444 55555555555 34444444444 56677777777777767776666666 7
Q ss_pred ccEEEccCccccccCccccCCCCCCCEEEccCCcCCccchhhccCCCCCCEEeCcCCcCCcccCCCchhhhcCCCCCCEE
Q 037325 345 LEKLELRFNQFTGILPISLGSLKNLRHLVLWQNSFLGSIPPSIGNLTLLKELYLASNQMNGQKISDSYQHLKNQTELRTL 424 (598)
Q Consensus 345 L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~ls~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~~~~L~~L 424 (598)
|++|++++|.+++.+|..++.+++|++|++++|++.+.+|..+..+++|++|++++|++++.. |. .+..+++|++|
T Consensus 420 L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~-p~---~l~~l~~L~~L 495 (768)
T 3rgz_A 420 LVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEI-PS---GLSNCTNLNWI 495 (768)
T ss_dssp CCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCC-CG---GGGGCTTCCEE
T ss_pred CCEEECcCCcccCcccHHHhcCCCCCEEECCCCcccCcCCHHHcCCCCceEEEecCCcccCcC-CH---HHhcCCCCCEE
Confidence 888888888888888888888888888888888888888888888888888888888888765 43 36677888888
Q ss_pred EccCccCccccchHHHhcCCCCCEEEccCCcCcccCCCCcccC-CCCEEEcccCcCcccCCCC-----------------
Q 037325 425 VLNKARISDTISDWFWQLSLTLDELDVAYNELRGRVPNSLGFN-FPAKVDLSFNNFEGRLLLW----------------- 486 (598)
Q Consensus 425 ~l~~n~l~~~~~~~~~~~~~~L~~L~ls~n~~~~~~p~~~~~~-~L~~l~ls~n~l~~~~~~~----------------- 486 (598)
++++|++++.+|.++.. +++|++|++++|+++|.+|..+... .|+.+++++|++.|.+|..
T Consensus 496 ~L~~N~l~~~~p~~~~~-l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~ 574 (768)
T 3rgz_A 496 SLSNNRLTGEIPKWIGR-LENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKR 574 (768)
T ss_dssp ECCSSCCCSCCCGGGGG-CTTCCEEECCSSCCEEECCGGGGGCTTCCEEECCSSEEESBCCGGGGTTTTCBCCSTTCSCE
T ss_pred EccCCccCCcCChHHhc-CCCCCEEECCCCcccCcCCHHHcCCCCCCEEECCCCccCCcCChHHhcccchhhhhcccccc
Confidence 88888888888887766 6788888888888888888877766 7888888888887766642
Q ss_pred --------------------------------------------------------CcCCcEEEccCCcccccCCchhhc
Q 037325 487 --------------------------------------------------------SFNVTKLYLRDNSFSGLIPNDIGQ 510 (598)
Q Consensus 487 --------------------------------------------------------~~~L~~L~ls~n~l~~~~p~~~~~ 510 (598)
+++|+.||+++|+++|.+|..++.
T Consensus 575 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~ 654 (768)
T 3rgz_A 575 YVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGS 654 (768)
T ss_dssp EEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSBCCCEEECCSSCCBSCCCGGGGG
T ss_pred ccccccccccccccccccccccccccchhhhccccccccccccceecccCchhhhccccccEEECcCCcccccCCHHHhc
Confidence 256889999999999999999988
Q ss_pred ccCCCCCccccCCCCeEeCcCCccccccchhccCCCCCCEEECCCCcCccccchhccCCCCCCEEEccCCCCcccCCcC
Q 037325 511 NLPFLTDLGNLKQLITLVISNNNLSGEIPLLFSNISFLYILDMSNNSLSGSTPESIGSLRTVKFLVLRNNYLSGKLPLS 589 (598)
Q Consensus 511 ~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~l~~l~~L~~L~l~~n~l~g~~P~~ 589 (598)
++.|+.|+|++|+++|.+|..|+++++|++|||++|+++|.+|..+.++++|++||+++|+++|.||+.
T Consensus 655 ----------l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~ls~N~l~g~iP~~ 723 (768)
T 3rgz_A 655 ----------MPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPEM 723 (768)
T ss_dssp ----------CTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEECCCGGGGGCCCCSEEECCSSEEEEECCSS
T ss_pred ----------cccCCEEeCcCCccCCCCChHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECcCCcccccCCCc
Confidence 999999999999999999999999999999999999999999999999999999999999999999975
|
| >3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2e-52 Score=454.79 Aligned_cols=479 Identities=20% Similarity=0.156 Sum_probs=374.3
Q ss_pred cccEEecC---------CCCcEEEEEcCCCCCCCCCCcccCCCCCcceecCccccCCCCCCEEeCCCCCCCCCCcchhcc
Q 037325 65 WSGVSCNN---------RTASVIKLNLNNPFRDSFGSFEDDAGHELGGEISPSLLQLKDLEYLDLSMNNFTGFQVPEFIG 135 (598)
Q Consensus 65 w~gv~c~~---------~~~~v~~L~L~~~~~~~~~~~~~~~~~~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~p~~~~ 135 (598)
+..|.|.+ ....++.||+++ +.+++..|..|.++++|++|+|++|.+.+. .|..|.
T Consensus 14 ~~~~~c~~~~l~~iP~~l~~~l~~L~Ls~--------------n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~-~~~~~~ 78 (606)
T 3t6q_A 14 NKTYNCENLGLNEIPGTLPNSTECLEFSF--------------NVLPTIQNTTFSRLINLTFLDLTRCQIYWI-HEDTFQ 78 (606)
T ss_dssp TTEEECTTSCCSSCCTTSCTTCCEEECTT--------------CCCSEECTTTSTTCTTCSEEECTTCCCCEE-CTTTTT
T ss_pred CceEECCCCCcccCcCCCCCcCcEEEccC--------------CccCcCChhHhccCccceEEECCCCcccee-Chhhcc
Confidence 44577753 234688999998 788888888888899999999999888865 677888
Q ss_pred CCCCCCEEECcCCCCCcccchhccCCCCCCEEEccCCCCCCCccChhhhcCCCCCcEEEcCCCCCCCCcccchHhhhcCC
Q 037325 136 SLKELRYLNLSGSFFSGTIPQTLGNLSNLLYLDLNNFLDQSNQIDLEWLSGLSSLVYFNLGGADLSKAGAYWLEVFNKLH 215 (598)
Q Consensus 136 ~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~l~ 215 (598)
++++|++|++++|++++..|..|+++++|++|++++|.+.... ...+.++++|++|++++|.+.+.. ...+..++
T Consensus 79 ~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~l~--~~~~~~l~~L~~L~L~~n~l~~~~---~~~~~~l~ 153 (606)
T 3t6q_A 79 SQHRLDTLVLTANPLIFMAETALSGPKALKHLFFIQTGISSID--FIPLHNQKTLESLYLGSNHISSIK---LPKGFPTE 153 (606)
T ss_dssp TCTTCCEEECTTCCCSEECTTTTSSCTTCCEEECTTSCCSCGG--GSCCTTCTTCCEEECCSSCCCCCC---CCTTCCCT
T ss_pred CccccCeeeCCCCcccccChhhhcccccccEeeccccCcccCC--cchhccCCcccEEECCCCcccccC---cccccCCc
Confidence 8899999999999888777888888899999999888765432 223778888888888888887753 23444588
Q ss_pred CCCEEEcCCCCCCCCCCCCCcCCCCCcc--EEEccCCCCCCCcchhhhcC------------------------------
Q 037325 216 SFVELHLPNCNLPSLPLSFPSLNFASLQ--VLDLSNNDFNSTTPHWLFNI------------------------------ 263 (598)
Q Consensus 216 ~L~~L~l~~~~l~~~~~~~~~~~l~~L~--~L~L~~n~l~~~~~~~l~~l------------------------------ 263 (598)
+|++|++++|.+++.++ ..+..+++|+ .|++++|.+++..+..+...
T Consensus 154 ~L~~L~L~~n~l~~~~~-~~~~~l~~L~~l~L~l~~n~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~l~~l~~ 232 (606)
T 3t6q_A 154 KLKVLDFQNNAIHYLSK-EDMSSLQQATNLSLNLNGNDIAGIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWL 232 (606)
T ss_dssp TCCEEECCSSCCCEECH-HHHHTTTTCCSEEEECTTCCCCEECTTTTTTCEEEEEECTTCSCHHHHHHHTTTCEEEEEEC
T ss_pred ccCEEEcccCcccccCh-hhhhhhcccceeEEecCCCccCccChhHhhhccccccccCCchhHHHHhhhccccchhheec
Confidence 88888888888887655 4566777777 78888888776555443221
Q ss_pred ---------------------CCCCEEEccCCcccccCCccccCCCCccEEECcCCCcCccccchhhcCCCCCCEEeccc
Q 037325 264 ---------------------TSLLCLDLGSNDLQGDIPDGFASLNSLQELDLSGNSFLGGQLSRNLGKLCNLRTMILSR 322 (598)
Q Consensus 264 ---------------------~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~l~~l~~L~~L~l~~ 322 (598)
.+|+.|++++|.+++..+..+..+++|++|++++|.+ . .+|..+..+++|++|++++
T Consensus 233 ~~~~~~~~~~i~~~~~~~l~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l-~-~lp~~l~~l~~L~~L~l~~ 310 (606)
T 3t6q_A 233 GTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFFNISSNTFHCFSGLQELDLTATHL-S-ELPSGLVGLSTLKKLVLSA 310 (606)
T ss_dssp CCCTTSCCCCCCGGGGGGGGGSEEEEEECTTCCCSSCCTTTTTTCTTCSEEECTTSCC-S-CCCSSCCSCTTCCEEECTT
T ss_pred hhhccccccccChhHhchhhcCceeEEEeecCccCccCHHHhccccCCCEEeccCCcc-C-CCChhhcccccCCEEECcc
Confidence 1577788888888776666788888888888888884 3 6777788888888888888
Q ss_pred ccCCcccchhhhCCCCCCCCCCccEEEccCccccccCcc-ccCCCCCCCEEEccCCcCCccc--hhhccCCCCCCEEeCc
Q 037325 323 NNISSEVSDFLDGLSECTNSILLEKLELRFNQFTGILPI-SLGSLKNLRHLVLWQNSFLGSI--PPSIGNLTLLKELYLA 399 (598)
Q Consensus 323 n~l~~~~~~~~~~l~~~~~~~~L~~L~Ls~n~l~~~~~~-~l~~l~~L~~L~ls~n~l~~~~--~~~l~~l~~L~~L~l~ 399 (598)
|.+.+..+..+..++ +|++|++++|.+.+.++. .+..+++|++|++++|.+.+.. +..+..+++|++|+++
T Consensus 311 n~l~~~~~~~~~~l~------~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~ 384 (606)
T 3t6q_A 311 NKFENLCQISASNFP------SLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLS 384 (606)
T ss_dssp CCCSBGGGGCGGGCT------TCSEEECCSCSSCCBCCSSTTTTCTTCCEEECCSSCCCEEEESTTTTTTCTTCCEEECC
T ss_pred CCcCcCchhhhhccC------cCCEEECCCCCcccccchhhhhccCcCCEEECCCCccccccCcchhcccCCCCCEEECC
Confidence 888887777777777 788888888888766554 4788888888888888887665 6678888888888888
Q ss_pred CCcCCcccCCCchhhhcCCCCCCEEEccCccCccccchHHHhcCCCCCEEEccCCcCcccCCCCcccC-CCCEEEcccCc
Q 037325 400 SNQMNGQKISDSYQHLKNQTELRTLVLNKARISDTISDWFWQLSLTLDELDVAYNELRGRVPNSLGFN-FPAKVDLSFNN 478 (598)
Q Consensus 400 ~n~l~~~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~ls~n~~~~~~p~~~~~~-~L~~l~ls~n~ 478 (598)
+|.+++.. +. .+..+++|+.|++++|++.+..+......+++|++|++++|.+++..|..+... .|+.|++++|+
T Consensus 385 ~n~l~~~~-~~---~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~ 460 (606)
T 3t6q_A 385 YNEPLSLK-TE---AFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNH 460 (606)
T ss_dssp SCSCEEEC-TT---TTTTCTTCSEEECTTCCEECCTTCCTTTTCTTCCEEECTTCCCBTTCTTTTTTCTTCCEEECTTCB
T ss_pred CCcCCcCC-HH---HhcCCccCCeEECCCCcCCCcccchhhhCcccCCEEECCCCccCCcCHHHHhCCCCCCEEECCCCC
Confidence 88887664 32 366778888888888888877665433447888889998888888878777665 88888898888
Q ss_pred Cccc-CC-----CCCcCCcEEEccCCcccccCCchhhcccCCCCCccccCCCCeEeCcCCccccccchhccCCCCCCEEE
Q 037325 479 FEGR-LL-----LWSFNVTKLYLRDNSFSGLIPNDIGQNLPFLTDLGNLKQLITLVISNNNLSGEIPLLFSNISFLYILD 552 (598)
Q Consensus 479 l~~~-~~-----~~~~~L~~L~ls~n~l~~~~p~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ 552 (598)
+.+. ++ ..+++|++|++++|++++..|..+.. +++|+.|+|++|++++..|..+.+++.| +|+
T Consensus 461 l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~----------l~~L~~L~Ls~N~l~~~~~~~l~~l~~L-~L~ 529 (606)
T 3t6q_A 461 FPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTS----------LKMMNHVDLSHNRLTSSSIEALSHLKGI-YLN 529 (606)
T ss_dssp CGGGEECSSCGGGGCTTCCEEECTTSCCCEECTTTTTT----------CTTCCEEECCSSCCCGGGGGGGTTCCSC-EEE
T ss_pred CCccccccchhhccCCCccEEECCCCccCccChhhhcc----------ccCCCEEECCCCccCcCChhHhCccccc-EEE
Confidence 8762 22 23578888899988888777777766 7888899999998888888888888888 889
Q ss_pred CCCCcCccccchhccCCCCCCEEEccCCCCcccCC
Q 037325 553 MSNNSLSGSTPESIGSLRTVKFLVLRNNYLSGKLP 587 (598)
Q Consensus 553 ls~N~l~~~~p~~l~~l~~L~~L~l~~n~l~g~~P 587 (598)
+++|++++..|..+..+++|+++++++|++.+..+
T Consensus 530 L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~ 564 (606)
T 3t6q_A 530 LASNHISIILPSLLPILSQQRTINLRQNPLDCTCS 564 (606)
T ss_dssp CCSSCCCCCCGGGHHHHHTSSEEECTTCCEECSGG
T ss_pred CcCCcccccCHhhcccCCCCCEEeCCCCCccccCC
Confidence 99998888888888888888999999988876444
|
| >4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.9e-54 Score=467.22 Aligned_cols=494 Identities=17% Similarity=0.243 Sum_probs=392.6
Q ss_pred CCHHHHHHHHHHHhcCCCCC--------CCCCCC-CCCCCCCc---ccEEecCCCCcEEEEEcCCCCCCCCCCcccCCCC
Q 037325 32 CQEAERKALLQFKQSLRDPS--------GQLSSW-VGEDCCSW---SGVSCNNRTASVIKLNLNNPFRDSFGSFEDDAGH 99 (598)
Q Consensus 32 ~~~~~~~~l~~~~~~~~~~~--------~~~~~W-~~~~~c~w---~gv~c~~~~~~v~~L~L~~~~~~~~~~~~~~~~~ 99 (598)
....|++||.++++++.++. ...++| .+.+||.| .||+|+.. ++|+.|+|++ +
T Consensus 27 ~~~~d~~aL~~~~~~~~~~~w~~~~~~~~~~~~W~~~~~~c~w~~~~GV~C~~~-~~V~~L~L~~--------------~ 91 (636)
T 4eco_A 27 EYIKDYLALKEIWDALNGKNWSQQGFGTQPGANWNFNKELDMWGAQPGVSLNSN-GRVTGLSLEG--------------F 91 (636)
T ss_dssp HHHHHHHHHHHHHHHTTGGGCCCCC------CCCCCSSCGGGTTCCTTEEECTT-CCEEEEECTT--------------S
T ss_pred hHHHHHHHHHHHHHHcCCCCcccCCcCCccCCCCCCCCCcccccCCCCeEEcCC-CCEEEEEecC--------------c
Confidence 44579999999999874332 123489 57899999 99999864 8999999999 8
Q ss_pred CcceecCccccCCCCCCEEeCCCCCCC------C-----CCcchhccCCCCCCEEECcCCCCCcccchhccC-CCCCCEE
Q 037325 100 ELGGEISPSLLQLKDLEYLDLSMNNFT------G-----FQVPEFIGSLKELRYLNLSGSFFSGTIPQTLGN-LSNLLYL 167 (598)
Q Consensus 100 ~l~~~~~~~l~~l~~L~~L~Ls~n~l~------~-----~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~-l~~L~~L 167 (598)
++.|.+|++++++++|++|+|++|.+. + ..+|... +..|+ ++++++.+.+.+|..+.. +..+..+
T Consensus 92 ~l~g~lp~~l~~L~~L~~L~Ls~N~~~~~~~~~~~~~~~~~~~~~~--~~~l~-l~l~~~~l~~~~~~~~~~~~~~l~~~ 168 (636)
T 4eco_A 92 GASGRVPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQ--KQKMR-MHYQKTFVDYDPREDFSDLIKDCINS 168 (636)
T ss_dssp CCEEEECGGGGGCTTCCEEESCCGGGGGTCCSBSTTSBCTTCCHHH--HHHHH-THHHHHHTCCCGGGGSCHHHHHHHHH
T ss_pred ccCCcCChHHhcCccceEEECcCCccccCCccccccccccCchHHH--HHHHH-hhHHHhhhccCchhhHHHHHHHHhhc
Confidence 999999999999999999999999762 1 0144433 45677 888888888877776652 1222222
Q ss_pred EccCCCCCCCccChhhhcCCCCCcEEEcC--CCCCCCCcccchHhhhcCCCCCEEEcCCCCCCC----------------
Q 037325 168 DLNNFLDQSNQIDLEWLSGLSSLVYFNLG--GADLSKAGAYWLEVFNKLHSFVELHLPNCNLPS---------------- 229 (598)
Q Consensus 168 ~L~~n~~~~~~~~~~~~~~l~~L~~L~l~--~n~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~---------------- 229 (598)
++...... ......++.+.+. .|.++++ |..+.++++|++|++++|.+++
T Consensus 169 ~l~~~~~~--------~~~~~~l~~l~l~~~~n~l~~i----p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~ 236 (636)
T 4eco_A 169 DPQQKSIK--------KSSRITLKDTQIGQLSNNITFV----SKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQ 236 (636)
T ss_dssp CTTSCCCC--------CCCCCCCCTTTTTCCSCEEEEE----CGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHH
T ss_pred Cccccccc--------cccccchhhhhhccccCCCccC----CHHHhcccCCCEEECcCCccccccccccccccccchhc
Confidence 22211110 0111222222232 3556652 6778899999999999999988
Q ss_pred --CCCCCCcCCCCCccEEEccCCCCCCCcchhhhcCCCCCEEEccCCc-ccc-cCCccccCC------CCccEEECcCCC
Q 037325 230 --LPLSFPSLNFASLQVLDLSNNDFNSTTPHWLFNITSLLCLDLGSND-LQG-DIPDGFASL------NSLQELDLSGNS 299 (598)
Q Consensus 230 --~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~-l~~-~~~~~l~~l------~~L~~L~l~~n~ 299 (598)
+|....+.++++|++|++++|.+.+.+|..+.++++|++|++++|. +++ .+|..++.+ ++|++|++++|.
T Consensus 237 ~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~ 316 (636)
T 4eco_A 237 QYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNN 316 (636)
T ss_dssp HHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTTCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSC
T ss_pred ccCchhhhhcccCCCCEEEecCCcCCccChHHHhcCCCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCc
Confidence 5543222389999999999999999999999999999999999998 888 788887765 899999999999
Q ss_pred cCccccch--hhcCCCCCCEEecccccCCcccchhhhCCCCCCCCCCccEEEccCccccccCccccCCCCC-CCEEEccC
Q 037325 300 FLGGQLSR--NLGKLCNLRTMILSRNNISSEVSDFLDGLSECTNSILLEKLELRFNQFTGILPISLGSLKN-LRHLVLWQ 376 (598)
Q Consensus 300 ~~~~~~~~--~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~l~~-L~~L~ls~ 376 (598)
+. .+|. .++.+++|++|++++|.+.+.+| .+..++ +|++|++++|.++ .+|..+..+++ |++|++++
T Consensus 317 -l~-~ip~~~~l~~l~~L~~L~L~~N~l~g~ip-~~~~l~------~L~~L~L~~N~l~-~lp~~l~~l~~~L~~L~Ls~ 386 (636)
T 4eco_A 317 -LK-TFPVETSLQKMKKLGMLECLYNQLEGKLP-AFGSEI------KLASLNLAYNQIT-EIPANFCGFTEQVENLSFAH 386 (636)
T ss_dssp -CS-SCCCHHHHTTCTTCCEEECCSCCCEEECC-CCEEEE------EESEEECCSSEEE-ECCTTSEEECTTCCEEECCS
T ss_pred -CC-ccCchhhhccCCCCCEEeCcCCcCccchh-hhCCCC------CCCEEECCCCccc-cccHhhhhhcccCcEEEccC
Confidence 44 7888 89999999999999999998888 677666 8999999999998 78888999999 99999999
Q ss_pred CcCCccchhhccCCC--CCCEEeCcCCcCCcccCCCchhh----hcCCCCCCEEEccCccCccccchHHHhcCCCCCEEE
Q 037325 377 NSFLGSIPPSIGNLT--LLKELYLASNQMNGQKISDSYQH----LKNQTELRTLVLNKARISDTISDWFWQLSLTLDELD 450 (598)
Q Consensus 377 n~l~~~~~~~l~~l~--~L~~L~l~~n~l~~~~~~~~~~~----l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~ 450 (598)
|+++ .+|..+...+ +|++|++++|.+++.. |..+.. ...+++|+.|++++|+++ .+|..++..+++|++|+
T Consensus 387 N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~~~-p~~l~~~~~~~~~~~~L~~L~Ls~N~l~-~lp~~~~~~l~~L~~L~ 463 (636)
T 4eco_A 387 NKLK-YIPNIFDAKSVSVMSAIDFSYNEIGSVD-GKNFDPLDPTPFKGINVSSINLSNNQIS-KFPKELFSTGSPLSSIN 463 (636)
T ss_dssp SCCS-SCCSCCCTTCSSCEEEEECCSSCTTTTT-TCSSCTTCSSCCCCCCEEEEECCSSCCC-SCCTHHHHTTCCCSEEE
T ss_pred CcCc-ccchhhhhcccCccCEEECcCCcCCCcc-hhhhcccccccccCCCCCEEECcCCccC-cCCHHHHccCCCCCEEE
Confidence 9998 7888777654 8999999999999876 543321 116679999999999999 45655555578999999
Q ss_pred ccCCcCcccCCCCcc-cC--------CCCEEEcccCcCcccCCC-----CCcCCcEEEccCCcccccCCchhhcccCCCC
Q 037325 451 VAYNELRGRVPNSLG-FN--------FPAKVDLSFNNFEGRLLL-----WSFNVTKLYLRDNSFSGLIPNDIGQNLPFLT 516 (598)
Q Consensus 451 ls~n~~~~~~p~~~~-~~--------~L~~l~ls~n~l~~~~~~-----~~~~L~~L~ls~n~l~~~~p~~~~~~~~~~~ 516 (598)
+++|+++ .+|.... .. .|+.|++++|+++ .+|. .+++|+.|++++|++++ +|..++.
T Consensus 464 Ls~N~l~-~i~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~-ip~~~~~------ 534 (636)
T 4eco_A 464 LMGNMLT-EIPKNSLKDENENFKNTYLLTSIDLRFNKLT-KLSDDFRATTLPYLVGIDLSYNSFSK-FPTQPLN------ 534 (636)
T ss_dssp CCSSCCS-BCCSSSSEETTEECTTGGGCCEEECCSSCCC-BCCGGGSTTTCTTCCEEECCSSCCSS-CCCGGGG------
T ss_pred CCCCCCC-CcCHHHhccccccccccCCccEEECcCCcCC-ccChhhhhccCCCcCEEECCCCCCCC-cChhhhc------
Confidence 9999999 5665443 22 7999999999998 4554 45799999999999997 8988887
Q ss_pred CccccCCCCeEeC------cCCccccccchhccCCCCCCEEECCCCcCccccchhccCCCCCCEEEccCCCCcc
Q 037325 517 DLGNLKQLITLVI------SNNNLSGEIPLLFSNISFLYILDMSNNSLSGSTPESIGSLRTVKFLVLRNNYLSG 584 (598)
Q Consensus 517 ~~~~l~~L~~L~L------s~N~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~l~~l~~L~~L~l~~n~l~g 584 (598)
+++|+.|+| ++|++.+.+|..++++++|++|++++|++ +.+|..+. ++|+.|++++|++..
T Consensus 535 ----l~~L~~L~Ls~N~~ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l-~~ip~~~~--~~L~~L~Ls~N~l~~ 601 (636)
T 4eco_A 535 ----SSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSNDI-RKVNEKIT--PNISVLDIKDNPNIS 601 (636)
T ss_dssp ----CSSCCEEECCSCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCC-CBCCSCCC--TTCCEEECCSCTTCE
T ss_pred ----CCCCCEEECCCCcccccCcccccChHHHhcCCCCCEEECCCCcC-CccCHhHh--CcCCEEECcCCCCcc
Confidence 899999999 56888999999999999999999999999 58998877 899999999998763
|
| >4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.8e-51 Score=453.89 Aligned_cols=490 Identities=16% Similarity=0.215 Sum_probs=366.7
Q ss_pred CCCCHHHHHHHHHHHhcCCCCCCCCCCCC------CCCC--CCc------------ccEEecCCCCcEEEEEcCCCCCCC
Q 037325 30 SGCQEAERKALLQFKQSLRDPSGQLSSWV------GEDC--CSW------------SGVSCNNRTASVIKLNLNNPFRDS 89 (598)
Q Consensus 30 ~~~~~~~~~~l~~~~~~~~~~~~~~~~W~------~~~~--c~w------------~gv~c~~~~~~v~~L~L~~~~~~~ 89 (598)
+++..+|++||++||+++.+| +|. ..+| |.| .||+|+. .++|+.|+|++
T Consensus 264 ~~~~~~d~~ALl~~k~~l~~~-----~W~~~~~~~~~~~~~C~W~~~~~~~~w~~~~GV~C~~-~~~V~~L~Ls~----- 332 (876)
T 4ecn_A 264 TAEYIKDYKALKAIWEALDGK-----NWRYYSGTINNTIHSLNWNFNKELDMWGDQPGVDLDN-NGRVTGLSLAG----- 332 (876)
T ss_dssp CCHHHHHHHHHHHHHHHTTGG-----GCCCCCSSCSSCCCCCSCCCSSCGGGTTCCTTEEECT-TSCEEEEECTT-----
T ss_pred cccchHHHHHHHHHHHHcCCC-----CCCcCCCcccccCCccccccccccccccCcCceEecC-CCCEEEEECcc-----
Confidence 345678999999999999766 562 2355 999 9999986 68999999999
Q ss_pred CCCcccCCCCCcceecCccccCCCCCCEEeC-CCCCCCCCCcchhccCC-CCCC-----EE---------E-CcCCCCCc
Q 037325 90 FGSFEDDAGHELGGEISPSLLQLKDLEYLDL-SMNNFTGFQVPEFIGSL-KELR-----YL---------N-LSGSFFSG 152 (598)
Q Consensus 90 ~~~~~~~~~~~l~~~~~~~l~~l~~L~~L~L-s~n~l~~~~~p~~~~~l-~~L~-----~L---------~-L~~n~l~~ 152 (598)
+++.|.+|+.++++++|++|+| ++|.+.+. .|-..... ..+. .+ + .....+.+
T Consensus 333 ---------~~L~G~ip~~l~~L~~L~~LdLss~N~lsG~-~~~~~~~~~~~l~~~~l~~lr~~~~~~~l~~~~~~~~s~ 402 (876)
T 4ecn_A 333 ---------FGAKGRVPDAIGQLTELKVLSFGTHSETVSG-RLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSD 402 (876)
T ss_dssp ---------TCCEEEECGGGGGCTTCCEEESCCTTHHHHT-TCBTTBCCCSSCCHHHHHHHHTHHHHHHTCCCGGGGSCH
T ss_pred ---------CCCCCcCchHHhccccceEeeeccccccccc-ccccccccccccchhHHHHHHHhhhhhhhccCcchhhhH
Confidence 8999999999999999999999 88877654 22111100 0000 00 0 00111222
Q ss_pred ccchhccCCCCCCEEEccCCCCCCCccChhhhcCCCCCcEEEcCC--CCCCCCcccchHhhhcCCCCCEEEcCCCCCCC-
Q 037325 153 TIPQTLGNLSNLLYLDLNNFLDQSNQIDLEWLSGLSSLVYFNLGG--ADLSKAGAYWLEVFNKLHSFVELHLPNCNLPS- 229 (598)
Q Consensus 153 ~~p~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~~l~~L~~L~l~~--n~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~- 229 (598)
.++..+...+....... .....++.+.+.. |.++++ |..+.++++|++|++++|.+++
T Consensus 403 l~~~~l~~~~~~~~i~~---------------~~~l~l~~l~l~~~~N~L~~I----P~~l~~L~~L~~L~Ls~N~Lsg~ 463 (876)
T 4ecn_A 403 LLQDAINRNPEMKPIKK---------------DSRISLKDTQIGNLTNRITFI----SKAIQRLTKLQIIYFANSPFTYD 463 (876)
T ss_dssp HHHHHHHTCTTSCCCCC---------------CCCCCCCTTTTTCCSCEEEEE----CGGGGGCTTCCEEEEESCCCCGG
T ss_pred HHHHHhhhCcccccccc---------------ccccchhhceeccccCcccch----hHHHhcCCCCCEEECcCCcCCCC
Confidence 22222222221111100 0111122222222 455542 5567777777777777777777
Q ss_pred -----------------CCCCCCcCCCCCccEEEccCCCCCCCcchhhhcCCCCCEEEccCCc-ccc-cCCccccCC---
Q 037325 230 -----------------LPLSFPSLNFASLQVLDLSNNDFNSTTPHWLFNITSLLCLDLGSND-LQG-DIPDGFASL--- 287 (598)
Q Consensus 230 -----------------~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~-l~~-~~~~~l~~l--- 287 (598)
+|....+.++++|++|++++|.+.+.+|..+.++++|+.|++++|+ +++ .+|..++.+
T Consensus 464 ~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~ 543 (876)
T 4ecn_A 464 NIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADD 543 (876)
T ss_dssp GBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGCSSCCEEECTTCTTSCHHHHHHHHHHHHHC
T ss_pred cccccccccccccccccCChhhhhccCCCCCEEECcCCCCCccChHHHhCCCCCCEEECcCCCCcccccchHHHHhhhhc
Confidence 4543323488999999999999999999999999999999999998 887 777765544
Q ss_pred ----CCccEEECcCCCcCccccch--hhcCCCCCCEEecccccCCcccchhhhCCCCCCCCCCccEEEccCccccccCcc
Q 037325 288 ----NSLQELDLSGNSFLGGQLSR--NLGKLCNLRTMILSRNNISSEVSDFLDGLSECTNSILLEKLELRFNQFTGILPI 361 (598)
Q Consensus 288 ----~~L~~L~l~~n~~~~~~~~~--~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~~~~~~~L~~L~Ls~n~l~~~~~~ 361 (598)
++|+.|++++|. +. .+|. .++.+++|+.|++++|.+. .+| .+..++ +|+.|++++|.++ .+|.
T Consensus 544 ~~~l~~L~~L~Ls~N~-L~-~ip~~~~l~~L~~L~~L~Ls~N~l~-~lp-~~~~L~------~L~~L~Ls~N~l~-~lp~ 612 (876)
T 4ecn_A 544 EDTGPKIQIFYMGYNN-LE-EFPASASLQKMVKLGLLDCVHNKVR-HLE-AFGTNV------KLTDLKLDYNQIE-EIPE 612 (876)
T ss_dssp TTTTTTCCEEECCSSC-CC-BCCCHHHHTTCTTCCEEECTTSCCC-BCC-CCCTTS------EESEEECCSSCCS-CCCT
T ss_pred ccccCCccEEEeeCCc-CC-ccCChhhhhcCCCCCEEECCCCCcc-cch-hhcCCC------cceEEECcCCccc-cchH
Confidence 499999999999 44 7887 8999999999999999988 555 666666 8999999999998 7888
Q ss_pred ccCCCCC-CCEEEccCCcCCccchhhccCCCC--CCEEeCcCCcCCcccCCCchhhhc--CCCCCCEEEccCccCccccc
Q 037325 362 SLGSLKN-LRHLVLWQNSFLGSIPPSIGNLTL--LKELYLASNQMNGQKISDSYQHLK--NQTELRTLVLNKARISDTIS 436 (598)
Q Consensus 362 ~l~~l~~-L~~L~ls~n~l~~~~~~~l~~l~~--L~~L~l~~n~l~~~~~~~~~~~l~--~~~~L~~L~l~~n~l~~~~~ 436 (598)
.+..+++ |+.|++++|++. .+|..+...+. |+.|++++|.+++.+ |.....+. ..++|+.|++++|+++ .+|
T Consensus 613 ~l~~l~~~L~~L~Ls~N~L~-~lp~~~~~~~~~~L~~L~Ls~N~l~g~i-p~l~~~l~~~~~~~L~~L~Ls~N~L~-~lp 689 (876)
T 4ecn_A 613 DFCAFTDQVEGLGFSHNKLK-YIPNIFNAKSVYVMGSVDFSYNKIGSEG-RNISCSMDDYKGINASTVTLSYNEIQ-KFP 689 (876)
T ss_dssp TSCEECTTCCEEECCSSCCC-SCCSCCCTTCSSCEEEEECCSSCTTTTS-SSCSSCTTTCCCCCEEEEECCSSCCC-SCC
T ss_pred HHhhccccCCEEECcCCCCC-cCchhhhccccCCCCEEECcCCcCCCcc-ccchhhhccccCCCcCEEEccCCcCC-ccC
Confidence 8888998 999999999988 77877776654 999999999998865 43222222 3458999999999998 566
Q ss_pred hHHHhcCCCCCEEEccCCcCcccCCCCccc-C--------CCCEEEcccCcCcccCCC-----CCcCCcEEEccCCcccc
Q 037325 437 DWFWQLSLTLDELDVAYNELRGRVPNSLGF-N--------FPAKVDLSFNNFEGRLLL-----WSFNVTKLYLRDNSFSG 502 (598)
Q Consensus 437 ~~~~~~~~~L~~L~ls~n~~~~~~p~~~~~-~--------~L~~l~ls~n~l~~~~~~-----~~~~L~~L~ls~n~l~~ 502 (598)
..+...+++|++|++++|+++ .+|..+.. . .|+.|++++|+++ .+|. .+++|+.|+|++|++++
T Consensus 690 ~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~~~~~~~l~nl~~L~~L~Ls~N~L~-~lp~~l~~~~l~~L~~L~Ls~N~L~~ 767 (876)
T 4ecn_A 690 TELFATGSPISTIILSNNLMT-SIPENSLKPKDGNYKNTYLLTTIDLRFNKLT-SLSDDFRATTLPYLSNMDVSYNCFSS 767 (876)
T ss_dssp HHHHHTTCCCSEEECCSCCCS-CCCTTSSSCTTSCCTTGGGCCEEECCSSCCC-CCCGGGSTTTCTTCCEEECCSSCCSS
T ss_pred HHHHccCCCCCEEECCCCcCC-ccChHHhccccccccccCCccEEECCCCCCc-cchHHhhhccCCCcCEEEeCCCCCCc
Confidence 666655889999999999998 66655433 1 6899999999998 4554 35789999999999996
Q ss_pred cCCchhhcccCCCCCccccCCCCeEeCcC------CccccccchhccCCCCCCEEECCCCcCccccchhccCCCCCCEEE
Q 037325 503 LIPNDIGQNLPFLTDLGNLKQLITLVISN------NNLSGEIPLLFSNISFLYILDMSNNSLSGSTPESIGSLRTVKFLV 576 (598)
Q Consensus 503 ~~p~~~~~~~~~~~~~~~l~~L~~L~Ls~------N~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~l~~l~~L~~L~ 576 (598)
+|..++. +++|+.|+|++ |.+.+.+|..|+++++|++|+|++|++ +.+|..+. ++|+.||
T Consensus 768 -lp~~l~~----------L~~L~~L~Ls~N~~ls~N~l~~~ip~~l~~L~~L~~L~Ls~N~L-~~Ip~~l~--~~L~~Ld 833 (876)
T 4ecn_A 768 -FPTQPLN----------SSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGSNDI-RKVDEKLT--PQLYILD 833 (876)
T ss_dssp -CCCGGGG----------CTTCCEEECCCCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCC-CBCCSCCC--SSSCEEE
T ss_pred -cchhhhc----------CCCCCEEECCCCCCcccccccccChHHHhcCCCCCEEECCCCCC-CccCHhhc--CCCCEEE
Confidence 8888877 89999999976 888899999999999999999999999 68998876 6999999
Q ss_pred ccCCCCcccCCcC
Q 037325 577 LRNNYLSGKLPLS 589 (598)
Q Consensus 577 l~~n~l~g~~P~~ 589 (598)
+++|++...-|..
T Consensus 834 Ls~N~l~~i~~~~ 846 (876)
T 4ecn_A 834 IADNPNISIDVTS 846 (876)
T ss_dssp CCSCTTCEEECGG
T ss_pred CCCCCCCccChHH
Confidence 9999987544433
|
| >3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=5.1e-50 Score=435.95 Aligned_cols=467 Identities=24% Similarity=0.256 Sum_probs=368.4
Q ss_pred CCcceecCccccCCCCCCEEeCCCCCCCCCCcchhccCCCCCCEEECcCCCCCcccchhccCCCCCCEEEccCCCCCCCc
Q 037325 99 HELGGEISPSLLQLKDLEYLDLSMNNFTGFQVPEFIGSLKELRYLNLSGSFFSGTIPQTLGNLSNLLYLDLNNFLDQSNQ 178 (598)
Q Consensus 99 ~~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~~~~~~ 178 (598)
.+++ .+|..+. +++++|++++|.+++. .|..+.++++|++|++++|++.+..|..|+++++|++|++++|.+...
T Consensus 22 ~~l~-~iP~~l~--~~l~~L~Ls~n~i~~~-~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~- 96 (606)
T 3t6q_A 22 LGLN-EIPGTLP--NSTECLEFSFNVLPTI-QNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIFM- 96 (606)
T ss_dssp SCCS-SCCTTSC--TTCCEEECTTCCCSEE-CTTTSTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCSEE-
T ss_pred CCcc-cCcCCCC--CcCcEEEccCCccCcC-ChhHhccCccceEEECCCCccceeChhhccCccccCeeeCCCCccccc-
Confidence 3443 4555554 4799999999999975 688899999999999999999988899999999999999999876532
Q ss_pred cChhhhcCCCCCcEEEcCCCCCCCCcccchHhhhcCCCCCEEEcCCCCCCCCCCCCCcCCCCCccEEEccCCCCCCCcch
Q 037325 179 IDLEWLSGLSSLVYFNLGGADLSKAGAYWLEVFNKLHSFVELHLPNCNLPSLPLSFPSLNFASLQVLDLSNNDFNSTTPH 258 (598)
Q Consensus 179 ~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~ 258 (598)
....+.++++|++|++++|.+.... +..+..+++|++|++++|.+++.+... +..+++|++|++++|.+++..+.
T Consensus 97 -~~~~~~~l~~L~~L~L~~n~i~~l~---~~~~~~l~~L~~L~L~~n~l~~~~~~~-~~~l~~L~~L~L~~n~l~~~~~~ 171 (606)
T 3t6q_A 97 -AETALSGPKALKHLFFIQTGISSID---FIPLHNQKTLESLYLGSNHISSIKLPK-GFPTEKLKVLDFQNNAIHYLSKE 171 (606)
T ss_dssp -CTTTTSSCTTCCEEECTTSCCSCGG---GSCCTTCTTCCEEECCSSCCCCCCCCT-TCCCTTCCEEECCSSCCCEECHH
T ss_pred -ChhhhcccccccEeeccccCcccCC---cchhccCCcccEEECCCCcccccCccc-ccCCcccCEEEcccCcccccChh
Confidence 3345899999999999999999875 456889999999999999999875523 33489999999999999988899
Q ss_pred hhhcCCCCC--EEEccCCcccccCCccccCC-------------------------------------------------
Q 037325 259 WLFNITSLL--CLDLGSNDLQGDIPDGFASL------------------------------------------------- 287 (598)
Q Consensus 259 ~l~~l~~L~--~L~l~~n~l~~~~~~~l~~l------------------------------------------------- 287 (598)
.+..+++|+ .|++++|.+.+..|..+...
T Consensus 172 ~~~~l~~L~~l~L~l~~n~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~l~~l~~~~~~~~~~~~i~~~~~~~l 251 (606)
T 3t6q_A 172 DMSSLQQATNLSLNLNGNDIAGIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGL 251 (606)
T ss_dssp HHHTTTTCCSEEEECTTCCCCEECTTTTTTCEEEEEECTTCSCHHHHHHHTTTCEEEEEECCCCTTSCCCCCCGGGGGGG
T ss_pred hhhhhcccceeEEecCCCccCccChhHhhhccccccccCCchhHHHHhhhccccchhheechhhccccccccChhHhchh
Confidence 999999999 99999999987666544321
Q ss_pred --CCccEEECcCCCcCccccchhhcCCCCCCEEecccccCCcccchhhhCCCCCCCCCCccEEEccCccccccCccccCC
Q 037325 288 --NSLQELDLSGNSFLGGQLSRNLGKLCNLRTMILSRNNISSEVSDFLDGLSECTNSILLEKLELRFNQFTGILPISLGS 365 (598)
Q Consensus 288 --~~L~~L~l~~n~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~ 365 (598)
.+|+.|++++|. +.+..+..+..+++|++|++++|.++ ..|..+..++ +|++|++++|.+.+..|..+..
T Consensus 252 ~~~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n~l~-~lp~~l~~l~------~L~~L~l~~n~l~~~~~~~~~~ 323 (606)
T 3t6q_A 252 CEMSVESINLQKHY-FFNISSNTFHCFSGLQELDLTATHLS-ELPSGLVGLS------TLKKLVLSANKFENLCQISASN 323 (606)
T ss_dssp GGSEEEEEECTTCC-CSSCCTTTTTTCTTCSEEECTTSCCS-CCCSSCCSCT------TCCEEECTTCCCSBGGGGCGGG
T ss_pred hcCceeEEEeecCc-cCccCHHHhccccCCCEEeccCCccC-CCChhhcccc------cCCEEECccCCcCcCchhhhhc
Confidence 156667777776 45555566777888888888888777 4444555555 7888888888887766777777
Q ss_pred CCCCCEEEccCCcCCccchhh-ccCCCCCCEEeCcCCcCCcccCCCchhhhcCCCCCCEEEccCccCccccchHHHhcCC
Q 037325 366 LKNLRHLVLWQNSFLGSIPPS-IGNLTLLKELYLASNQMNGQKISDSYQHLKNQTELRTLVLNKARISDTISDWFWQLSL 444 (598)
Q Consensus 366 l~~L~~L~ls~n~l~~~~~~~-l~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~ 444 (598)
+++|++|++++|.+.+.++.. +..+++|++|++++|.+++.... ...+..+++|++|++++|++.+..+..+.. ++
T Consensus 324 l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~--~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~-l~ 400 (606)
T 3t6q_A 324 FPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCC--NLQLRNLSHLQSLNLSYNEPLSLKTEAFKE-CP 400 (606)
T ss_dssp CTTCSEEECCSCSSCCBCCSSTTTTCTTCCEEECCSSCCCEEEES--TTTTTTCTTCCEEECCSCSCEEECTTTTTT-CT
T ss_pred cCcCCEEECCCCCcccccchhhhhccCcCCEEECCCCccccccCc--chhcccCCCCCEEECCCCcCCcCCHHHhcC-Cc
Confidence 888888888888777665543 77788888888888877654310 123667788888888888887776666655 67
Q ss_pred CCCEEEccCCcCcccCCCC-cccC-CCCEEEcccCcCcccCCCC---CcCCcEEEccCCcccccC---CchhhcccCCCC
Q 037325 445 TLDELDVAYNELRGRVPNS-LGFN-FPAKVDLSFNNFEGRLLLW---SFNVTKLYLRDNSFSGLI---PNDIGQNLPFLT 516 (598)
Q Consensus 445 ~L~~L~ls~n~~~~~~p~~-~~~~-~L~~l~ls~n~l~~~~~~~---~~~L~~L~ls~n~l~~~~---p~~~~~~~~~~~ 516 (598)
+|++|++++|++++..|.. +... .|+.|++++|.+.+..|.. +++|++|++++|++++.. +..+..
T Consensus 401 ~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~------ 474 (606)
T 3t6q_A 401 QLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQT------ 474 (606)
T ss_dssp TCSEEECTTCCEECCTTCCTTTTCTTCCEEECTTCCCBTTCTTTTTTCTTCCEEECTTCBCGGGEECSSCGGGG------
T ss_pred cCCeEECCCCcCCCcccchhhhCcccCCEEECCCCccCCcCHHHHhCCCCCCEEECCCCCCCccccccchhhcc------
Confidence 8888888888887766544 4444 7888888888887766654 577888888888887622 233444
Q ss_pred CccccCCCCeEeCcCCccccccchhccCCCCCCEEECCCCcCccccchhccCCCCCCEEEccCCCCcccCCcCccCcCCC
Q 037325 517 DLGNLKQLITLVISNNNLSGEIPLLFSNISFLYILDMSNNSLSGSTPESIGSLRTVKFLVLRNNYLSGKLPLSLKNCTFQ 596 (598)
Q Consensus 517 ~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~l~~l~~L~~L~l~~n~l~g~~P~~~~~~~~L 596 (598)
+++|+.|++++|.+++..|..|+++++|++|++++|++++..|..+.++++| +|++++|++++..|..+..+++|
T Consensus 475 ----l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L-~L~L~~N~l~~~~~~~~~~l~~L 549 (606)
T 3t6q_A 475 ----LGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGI-YLNLASNHISIILPSLLPILSQQ 549 (606)
T ss_dssp ----CTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCGGGGGGGTTCCSC-EEECCSSCCCCCCGGGHHHHHTS
T ss_pred ----CCCccEEECCCCccCccChhhhccccCCCEEECCCCccCcCChhHhCccccc-EEECcCCcccccCHhhcccCCCC
Confidence 8999999999999998888999999999999999999999999999999999 99999999998888877777666
Q ss_pred C
Q 037325 597 E 597 (598)
Q Consensus 597 ~ 597 (598)
+
T Consensus 550 ~ 550 (606)
T 3t6q_A 550 R 550 (606)
T ss_dssp S
T ss_pred C
Confidence 4
|
| >1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.1e-49 Score=436.88 Aligned_cols=489 Identities=24% Similarity=0.226 Sum_probs=290.1
Q ss_pred CCcEEEEEcCCCCCCCCCCcccCCCCCcceecCccccCCCCCCEEeCCCCCCCCCCcchhccCCCCCCEEECcCCCCCcc
Q 037325 74 TASVIKLNLNNPFRDSFGSFEDDAGHELGGEISPSLLQLKDLEYLDLSMNNFTGFQVPEFIGSLKELRYLNLSGSFFSGT 153 (598)
Q Consensus 74 ~~~v~~L~L~~~~~~~~~~~~~~~~~~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~p~~~~~l~~L~~L~L~~n~l~~~ 153 (598)
..+++.|++++ +.+.+..+..+.++++|++|++++|.+++. .|..+.++++|++|++++|++++.
T Consensus 24 ~~~l~~L~Ls~--------------n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~-~~~~~~~l~~L~~L~L~~n~l~~l 88 (680)
T 1ziw_A 24 PTNITVLNLTH--------------NQLRRLPAANFTRYSQLTSLDVGFNTISKL-EPELCQKLPMLKVLNLQHNELSQL 88 (680)
T ss_dssp CTTCSEEECCS--------------SCCCCCCGGGGGGGTTCSEEECCSSCCCCC-CTTHHHHCTTCCEEECCSSCCCCC
T ss_pred CCCCcEEECCC--------------CCCCCcCHHHHhCCCcCcEEECCCCccCcc-CHHHHhcccCcCEEECCCCccCcc
Confidence 35789999988 455555555566666666666666666554 455555666666666666666533
Q ss_pred cchhccCCCCCCEEEccCCCCCCCccChhhhcCCCCCcEEEcCCCCCCCCcccchHhhhcCCCCCEEEcCCCCCCCCCCC
Q 037325 154 IPQTLGNLSNLLYLDLNNFLDQSNQIDLEWLSGLSSLVYFNLGGADLSKAGAYWLEVFNKLHSFVELHLPNCNLPSLPLS 233 (598)
Q Consensus 154 ~p~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~ 233 (598)
.+..|+++++|++|++++|.+.... ...+.++++|++|++++|.+.+.. +..+..+++|++|++++|.+++.++.
T Consensus 89 ~~~~~~~l~~L~~L~L~~n~l~~~~--~~~~~~l~~L~~L~Ls~n~l~~~~---~~~~~~l~~L~~L~L~~n~l~~~~~~ 163 (680)
T 1ziw_A 89 SDKTFAFCTNLTELHLMSNSIQKIK--NNPFVKQKNLITLDLSHNGLSSTK---LGTQVQLENLQELLLSNNKIQALKSE 163 (680)
T ss_dssp CTTTTTTCTTCSEEECCSSCCCCCC--SCTTTTCTTCCEEECCSSCCSCCC---CCSSSCCTTCCEEECCSSCCCCBCHH
T ss_pred ChhhhccCCCCCEEECCCCccCccC--hhHccccCCCCEEECCCCcccccC---chhhcccccCCEEEccCCcccccCHH
Confidence 3334566666666666665443221 123555566666666666555443 33445555555555555555554331
Q ss_pred C-CcCCCCCccEEEccCCCCCCCcchhhhcC---------------------------CCCCEEEccCCcccccCCcccc
Q 037325 234 F-PSLNFASLQVLDLSNNDFNSTTPHWLFNI---------------------------TSLLCLDLGSNDLQGDIPDGFA 285 (598)
Q Consensus 234 ~-~~~~l~~L~~L~L~~n~l~~~~~~~l~~l---------------------------~~L~~L~l~~n~l~~~~~~~l~ 285 (598)
. ....+++|++|++++|.+++..+..+..+ ++|+.|++++|.+.+..|..+.
T Consensus 164 ~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~ 243 (680)
T 1ziw_A 164 ELDIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFL 243 (680)
T ss_dssp HHGGGTTCEESEEECTTCCCCCBCTTGGGGSSEECEEECTTCCCHHHHHHHHHHHHTTSCCCEEECTTSCCCEECTTTTG
T ss_pred HhhccccccccEEECCCCcccccChhhhhhhhhhhhhhccccccChhhHHHHHHHhhhccccEEEccCCcccccChhHhh
Confidence 1 11233455555555555554444433322 3344444444444444444444
Q ss_pred CCCC--ccEEECcCCCcCccccchhhcCCCCCCEEecccccCCcccchhhhCCC--------------------------
Q 037325 286 SLNS--LQELDLSGNSFLGGQLSRNLGKLCNLRTMILSRNNISSEVSDFLDGLS-------------------------- 337 (598)
Q Consensus 286 ~l~~--L~~L~l~~n~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~-------------------------- 337 (598)
.++. |++|++++|. +.+..+..++.+++|++|++++|.+.+..+..+..++
T Consensus 244 ~l~~~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~lp~i~~ 322 (680)
T 1ziw_A 244 GLKWTNLTMLDLSYNN-LNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDD 322 (680)
T ss_dssp GGGGSCCCEEECTTSC-CCEECTTTTTTCTTCCEEECCSCCBSEECTTTTTTCTTCCEEECTTCBCCC------CCEECT
T ss_pred ccCcCCCCEEECCCCC-cCccCcccccCcccccEeeCCCCccCccChhhhcCCCCccEEeccchhhhcccccccccccCh
Confidence 4332 5555555555 3344444455555555555555555544444444333
Q ss_pred -CCCCCCCccEEEccCccccccCccccCCCCCCCEEEccCCcCCcc-ch-hhccC--CCCCCEEeCcCCcCCcccCCCch
Q 037325 338 -ECTNSILLEKLELRFNQFTGILPISLGSLKNLRHLVLWQNSFLGS-IP-PSIGN--LTLLKELYLASNQMNGQKISDSY 412 (598)
Q Consensus 338 -~~~~~~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~ls~n~l~~~-~~-~~l~~--l~~L~~L~l~~n~l~~~~~~~~~ 412 (598)
....+++|++|++++|.+.+..+..+..+++|++|++++|.+... ++ ..+.. .++|+.|++++|++++.. +
T Consensus 323 ~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~l~~~~f~~~~~~~L~~L~L~~n~l~~~~-~--- 398 (680)
T 1ziw_A 323 FSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIE-S--- 398 (680)
T ss_dssp TTTTTCTTCCEEECCSCCBCCCCTTTTTTCTTCCEEECTTCBSCCCEECTTTTGGGTTSCCCEEECTTSCCCEEC-T---
T ss_pred hhcccCCCCCEEECCCCccCCCChhHhccccCCcEEECCCCchhhhhcchhhhcccccCcCceEECCCCCCCeEC-h---
Confidence 011122555555555555555555555555566666655543221 11 11111 235666666666665543 3
Q ss_pred hhhcCCCCCCEEEccCccCccccchHHHhcCCCCCEEEccCCcCcccCCCCcccC-CCCEEEcccCcCc--ccCCCC---
Q 037325 413 QHLKNQTELRTLVLNKARISDTISDWFWQLSLTLDELDVAYNELRGRVPNSLGFN-FPAKVDLSFNNFE--GRLLLW--- 486 (598)
Q Consensus 413 ~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~ls~n~~~~~~p~~~~~~-~L~~l~ls~n~l~--~~~~~~--- 486 (598)
..+..+++|+.|++++|++++.++...+..+++|++|++++|++.+..+..+... .++.+++++|.+. +.+|..
T Consensus 399 ~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~p~~~~~ 478 (680)
T 1ziw_A 399 DAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQP 478 (680)
T ss_dssp TTTTTCTTCCEEECCSSCCEEECCSGGGTTCTTCCEEECCSCSEEECCTTTTTTCTTCCEEECTTSCCBCTTCSSCTTTT
T ss_pred hhhhCCCCCCEEeCCCCcCccccCcccccCcccccEEecCCCCcceeChhhhhcCcccccchhccccccccccCCccccc
Confidence 2356677777777777777766654434446777777777777776666666655 7788888888776 344443
Q ss_pred CcCCcEEEccCCcccccCCchhhcccCCCCCccccCCCCeEeCcCCccccccc--------hhccCCCCCCEEECCCCcC
Q 037325 487 SFNVTKLYLRDNSFSGLIPNDIGQNLPFLTDLGNLKQLITLVISNNNLSGEIP--------LLFSNISFLYILDMSNNSL 558 (598)
Q Consensus 487 ~~~L~~L~ls~n~l~~~~p~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p--------~~~~~l~~L~~L~ls~N~l 558 (598)
+++|+.|++++|++++..|..+.. +++|+.|++++|.+++..+ ..|.++++|++|++++|++
T Consensus 479 l~~L~~L~Ls~N~l~~i~~~~~~~----------l~~L~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~N~l 548 (680)
T 1ziw_A 479 LRNLTILDLSNNNIANINDDMLEG----------LEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGF 548 (680)
T ss_dssp CTTCCEEECCSSCCCCCCTTTTTT----------CTTCCEEECCSSCCGGGGSTTSTTSCCCTTTTCTTCCEEECCSSCC
T ss_pred CCCCCEEECCCCCCCcCChhhhcc----------ccccCEEeCCCCCccccchhhccCCcchhhcCCCCCCEEECCCCCC
Confidence 577888888888888655555555 8999999999999985422 2378899999999999999
Q ss_pred ccccchhccCCCCCCEEEccCCCCcccCCcCccCcCCCC
Q 037325 559 SGSTPESIGSLRTVKFLVLRNNYLSGKLPLSLKNCTFQE 597 (598)
Q Consensus 559 ~~~~p~~l~~l~~L~~L~l~~n~l~g~~P~~~~~~~~L~ 597 (598)
+...+..|.++++|+.|++++|++++..|..+..+++|+
T Consensus 549 ~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~ 587 (680)
T 1ziw_A 549 DEIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLK 587 (680)
T ss_dssp CCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCC
T ss_pred CCCCHHHcccccCcceeECCCCCCCcCCHhHhCCCCCCC
Confidence 944445689999999999999999965555677887775
|
| >3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.6e-49 Score=430.42 Aligned_cols=462 Identities=20% Similarity=0.157 Sum_probs=353.1
Q ss_pred CCcEEEEEcCCCCCCCCCCcccCCCCCcceecCccccCCCCCCEEeCCCCCCCCCCcchhccCCCCCCEEECcCCCCCcc
Q 037325 74 TASVIKLNLNNPFRDSFGSFEDDAGHELGGEISPSLLQLKDLEYLDLSMNNFTGFQVPEFIGSLKELRYLNLSGSFFSGT 153 (598)
Q Consensus 74 ~~~v~~L~L~~~~~~~~~~~~~~~~~~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~p~~~~~l~~L~~L~L~~n~l~~~ 153 (598)
..+++.|++++ +.+++..+..|.++++|++|++++|.+++. .|..+.++++|++|++++|.+++.
T Consensus 31 ~~~l~~L~Ls~--------------n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~i-~~~~~~~l~~L~~L~Ls~n~l~~~ 95 (606)
T 3vq2_A 31 PSSTKNIDLSF--------------NPLKILKSYSFSNFSELQWLDLSRCEIETI-EDKAWHGLHHLSNLILTGNPIQSF 95 (606)
T ss_dssp CTTCCEEECTT--------------SCCCEECTTTTTTCTTCCEEECTTCCCCEE-CTTTTTTCTTCCEEECTTCCCCCC
T ss_pred CCCcCEEECCC--------------CCcCEeChhhccCCccCcEEeCCCCccccc-CHHHhhchhhcCEeECCCCccccc
Confidence 35789999998 778877777888888888888888888864 567788888888888888888877
Q ss_pred cchhccCCCCCCEEEccCCCCCCCccChhhhcCCCCCcEEEcCCCCCCCCcccchHhhhcCCCCCEEEcCCCCCCCCCCC
Q 037325 154 IPQTLGNLSNLLYLDLNNFLDQSNQIDLEWLSGLSSLVYFNLGGADLSKAGAYWLEVFNKLHSFVELHLPNCNLPSLPLS 233 (598)
Q Consensus 154 ~p~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~ 233 (598)
.|..|+++++|++|++++|.+..... ..+.++++|++|++++|.+.+.. ++..+.++++|++|++++|.+++.++
T Consensus 96 ~p~~~~~l~~L~~L~L~~n~l~~~~~--~~~~~l~~L~~L~L~~n~l~~~~--lp~~~~~l~~L~~L~Ls~n~l~~~~~- 170 (606)
T 3vq2_A 96 SPGSFSGLTSLENLVAVETKLASLES--FPIGQLITLKKLNVAHNFIHSCK--LPAYFSNLTNLVHVDLSYNYIQTITV- 170 (606)
T ss_dssp CTTSSTTCTTCCEEECTTSCCCCSSS--SCCTTCTTCCEEECCSSCCCCCC--CCGGGGTCTTCCEEECCSSCCCEECT-
T ss_pred ChhhcCCcccCCEEEccCCccccccc--cccCCCCCCCEEeCCCCccccee--chHhHhhcCCCCEEEccCCcceecCh-
Confidence 78888888888888888887644332 22778888888888888887532 15678888888888888888877655
Q ss_pred CCcCCCCCc----cEEEccCCCCCCCcchhhhcCCCCCEEEccCCccc--------------------------------
Q 037325 234 FPSLNFASL----QVLDLSNNDFNSTTPHWLFNITSLLCLDLGSNDLQ-------------------------------- 277 (598)
Q Consensus 234 ~~~~~l~~L----~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~-------------------------------- 277 (598)
..+..+++| ++|++++|.+++..+..+... +|+.|++++|.+.
T Consensus 171 ~~~~~l~~L~~~l~~L~l~~n~l~~~~~~~~~~~-~L~~L~L~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~l~~ 249 (606)
T 3vq2_A 171 NDLQFLRENPQVNLSLDMSLNPIDFIQDQAFQGI-KLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEI 249 (606)
T ss_dssp TTTHHHHHCTTCCCEEECTTCCCCEECTTTTTTC-EEEEEEEESCCSCHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSC
T ss_pred hhhhhhhccccccceeeccCCCcceeCcccccCc-eeeeeeccCCccchhHHHHHhccccccccccccccccccCCcccc
Confidence 333333333 367777776664444333332 5666666665442
Q ss_pred --------------------------ccCCccccCCCCccEEECcCCCcCccccchhhcCCCCCCEEecccccCCcccch
Q 037325 278 --------------------------GDIPDGFASLNSLQELDLSGNSFLGGQLSRNLGKLCNLRTMILSRNNISSEVSD 331 (598)
Q Consensus 278 --------------------------~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~ 331 (598)
+..|. +..+++|+.|++++|.+ ..+| .+..+++|++|++++|.+ +..|.
T Consensus 250 ~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~-~~~l~~L~~L~l~~~~~--~~l~-~l~~~~~L~~L~l~~n~l-~~lp~ 324 (606)
T 3vq2_A 250 FEPSIMEGLCDVTIDEFRLTYTNDFSDDIVK-FHCLANVSAMSLAGVSI--KYLE-DVPKHFKWQSLSIIRCQL-KQFPT 324 (606)
T ss_dssp CCGGGGTTGGGSEEEEEEECCCTTCCGGGGS-CGGGTTCSEEEEESCCC--CCCC-CCCTTCCCSEEEEESCCC-SSCCC
T ss_pred cChHHhhhhhhccHhheeccccccccccccc-cccCCCCCEEEecCccc--hhhh-hccccccCCEEEcccccC-ccccc
Confidence 23333 55677888888888874 3445 677888888888888888 45553
Q ss_pred hhhCCCCCCCCCCccEEEccCccccccCccccCCCCCCCEEEccCCcCCcc--chhhccCCCCCCEEeCcCCcCCcccCC
Q 037325 332 FLDGLSECTNSILLEKLELRFNQFTGILPISLGSLKNLRHLVLWQNSFLGS--IPPSIGNLTLLKELYLASNQMNGQKIS 409 (598)
Q Consensus 332 ~~~~l~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~ls~n~l~~~--~~~~l~~l~~L~~L~l~~n~l~~~~~~ 409 (598)
+ .++ +|++|++++|...+.. .+..+++|++|++++|++++. .+..+..+++|++|++++|.+++..
T Consensus 325 -~-~l~------~L~~L~l~~n~~~~~~--~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~-- 392 (606)
T 3vq2_A 325 -L-DLP------FLKSLTLTMNKGSISF--KKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAIIMS-- 392 (606)
T ss_dssp -C-CCS------SCCEEEEESCSSCEEC--CCCCCTTCCEEECCSSCEEEEEECCHHHHCCSCCCEEECCSCSEEEEC--
T ss_pred -C-CCC------ccceeeccCCcCccch--hhccCCCCCEEECcCCccCCCcchhhhhccCCcccEeECCCCccccch--
Confidence 3 455 7889999888655433 566888999999999988765 3677888899999999999887643
Q ss_pred CchhhhcCCCCCCEEEccCccCccccchHHHhcCCCCCEEEccCCcCcccCCCCcccC-CCCEEEcccCcCccc-CCCC-
Q 037325 410 DSYQHLKNQTELRTLVLNKARISDTISDWFWQLSLTLDELDVAYNELRGRVPNSLGFN-FPAKVDLSFNNFEGR-LLLW- 486 (598)
Q Consensus 410 ~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~ls~n~~~~~~p~~~~~~-~L~~l~ls~n~l~~~-~~~~- 486 (598)
..+..+++|+.|++++|++.+..+......+++|++|++++|.+++..|..+... .|+.|++++|++.+. +|..
T Consensus 393 ---~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~ 469 (606)
T 3vq2_A 393 ---ANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVF 469 (606)
T ss_dssp ---CCCTTCTTCCEEECTTSEEESTTTTTTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCC
T ss_pred ---hhccCCCCCCeeECCCCccCCccChhhhhccccCCEEECcCCCCCccchhhhcCCCCCCEEECCCCcCCCcchHHhh
Confidence 2467788999999999998887773333347889999999999998888887766 899999999999874 4544
Q ss_pred --CcCCcEEEccCCcccccCCchhhcccCCCCCccccCCCCeEeCcCCccccccchhccCCCCCCEEECCCCcCccccch
Q 037325 487 --SFNVTKLYLRDNSFSGLIPNDIGQNLPFLTDLGNLKQLITLVISNNNLSGEIPLLFSNISFLYILDMSNNSLSGSTPE 564 (598)
Q Consensus 487 --~~~L~~L~ls~n~l~~~~p~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~ 564 (598)
+++|++|++++|++++..|..+.. +++|+.|++++|++++.+|..++++++|++|++++|+++ .+|.
T Consensus 470 ~~l~~L~~L~Ls~n~l~~~~~~~~~~----------l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~-~~p~ 538 (606)
T 3vq2_A 470 ANTTNLTFLDLSKCQLEQISWGVFDT----------LHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIE-TSKG 538 (606)
T ss_dssp TTCTTCCEEECTTSCCCEECTTTTTT----------CTTCCEEECCSSCCSCEEGGGTTTCTTCCEEECTTSCCC-CEES
T ss_pred ccCCCCCEEECCCCcCCccChhhhcc----------cccCCEEECCCCcCCCcCHHHccCCCcCCEEECCCCcCc-ccCH
Confidence 578999999999999877777766 889999999999999888999999999999999999998 6888
Q ss_pred hccCCC-CCCEEEccCCCCcccCC
Q 037325 565 SIGSLR-TVKFLVLRNNYLSGKLP 587 (598)
Q Consensus 565 ~l~~l~-~L~~L~l~~n~l~g~~P 587 (598)
.+..++ +|++|++++|++.+..|
T Consensus 539 ~~~~l~~~L~~l~l~~N~~~c~c~ 562 (606)
T 3vq2_A 539 ILQHFPKSLAFFNLTNNSVACICE 562 (606)
T ss_dssp CGGGSCTTCCEEECCSCCCCCSST
T ss_pred hHhhhcccCcEEEccCCCcccCCc
Confidence 888886 59999999999886544
|
| >3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-49 Score=446.97 Aligned_cols=484 Identities=19% Similarity=0.185 Sum_probs=368.1
Q ss_pred CCcccEEecCCCCcEEEEEcCCCCCCCCCCcccCCCCCcceecCccccCCCCCCEEeCCCCCCCCCCc-chhccCCCCCC
Q 037325 63 CSWSGVSCNNRTASVIKLNLNNPFRDSFGSFEDDAGHELGGEISPSLLQLKDLEYLDLSMNNFTGFQV-PEFIGSLKELR 141 (598)
Q Consensus 63 c~w~gv~c~~~~~~v~~L~L~~~~~~~~~~~~~~~~~~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~-p~~~~~l~~L~ 141 (598)
|.|..|.+ ...+++.|||++ +.+++..+..|.++++|++|+|++|...+. + |..+.++++|+
T Consensus 14 ~~L~~vP~--lp~~l~~LdLs~--------------N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~-i~~~~f~~L~~L~ 76 (844)
T 3j0a_A 14 CNLTQVPQ--VLNTTERLLLSF--------------NYIRTVTASSFPFLEQLQLLELGSQYTPLT-IDKEAFRNLPNLR 76 (844)
T ss_dssp CCSSCCCS--SCTTCCEEEEES--------------CCCCEECSSSCSSCCSCSEEEECTTCCCCE-ECTTTTSSCTTCC
T ss_pred CCCCCCCC--CCCCcCEEECCC--------------CcCCccChhHCcccccCeEEeCCCCCCccc-cCHHHhcCCCCCC
Confidence 45666666 467899999998 789988899999999999999999966553 5 77899999999
Q ss_pred EEECcCCCCCcccchhccCCCCCCEEEccCCCCCCCccChhhhcCCCCCcEEEcCCCCCCCCcccchHhhhcCCCCCEEE
Q 037325 142 YLNLSGSFFSGTIPQTLGNLSNLLYLDLNNFLDQSNQIDLEWLSGLSSLVYFNLGGADLSKAGAYWLEVFNKLHSFVELH 221 (598)
Q Consensus 142 ~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~l~~L~~L~ 221 (598)
+|+|++|.+.+..|..|+++++|++|++++|.+.........+.++++|++|++++|.+.+..+ +..+.++++|++|+
T Consensus 77 ~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~--~~~~~~L~~L~~L~ 154 (844)
T 3j0a_A 77 ILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYL--HPSFGKLNSLKSID 154 (844)
T ss_dssp EEECTTCCCCEECTTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCC--CGGGGTCSSCCEEE
T ss_pred EEECCCCcCcccCHhHccCCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCccccccc--chhHhhCCCCCEEE
Confidence 9999999999888999999999999999999876544444458899999999999999987652 35789999999999
Q ss_pred cCCCCCCCCCCCCCcCCC--CCccEEEccCCCCCCCcchhhhcCCC------CCEEEccCCcccccCCccccC-------
Q 037325 222 LPNCNLPSLPLSFPSLNF--ASLQVLDLSNNDFNSTTPHWLFNITS------LLCLDLGSNDLQGDIPDGFAS------- 286 (598)
Q Consensus 222 l~~~~l~~~~~~~~~~~l--~~L~~L~L~~n~l~~~~~~~l~~l~~------L~~L~l~~n~l~~~~~~~l~~------- 286 (598)
+++|.+++..+ ..+..+ ++|+.|++++|.+.+..+..+..+++ |+.|++++|.+++..+..+..
T Consensus 155 Ls~N~i~~~~~-~~l~~l~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l 233 (844)
T 3j0a_A 155 FSSNQIFLVCE-HELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQA 233 (844)
T ss_dssp EESSCCCCCCS-GGGHHHHHCSSCCCEECCSBSCCCCCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCB
T ss_pred CCCCcCCeeCH-HHcccccCCccceEECCCCccccccccchhhcCCccccCceeEEecCCCcCchhHHHHHHhhcCcccc
Confidence 99999988765 444444 78899999999888877776666555 899999988776655543321
Q ss_pred -------------------------------CCCccEEECcCCCcCccccchhhcCCCCCCEEecccccCCcccchhhhC
Q 037325 287 -------------------------------LNSLQELDLSGNSFLGGQLSRNLGKLCNLRTMILSRNNISSEVSDFLDG 335 (598)
Q Consensus 287 -------------------------------l~~L~~L~l~~n~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~ 335 (598)
.++|+.|++++|. +.+..+..+..+++|+.|++++|.+.+..+..+..
T Consensus 234 ~~L~l~~~~~~~~~~~~~l~~~~~~~f~~l~~~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~ 312 (844)
T 3j0a_A 234 FSLILAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGF-VFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYG 312 (844)
T ss_dssp SEEECCSSCCBCSSSCSSSTTGGGTTTTTTTTSCCCEEECTTCC-CCEECSCCSSSCCCCCEEEEESCCCCEECTTTTTT
T ss_pred cceecccccccccccccccCCCChhhhhccccCCccEEECCCCc-ccccChhhhhcCCCCCEEECCCCcCCCCChHHhcC
Confidence 2567888888887 55666777777888888888888887777777776
Q ss_pred CCCCCCCCCccEEEccCccccccCccccCCCCCCCEEEccCCcCCccchhhccCCCCCCEEeCcCCcCCcccCCCchhhh
Q 037325 336 LSECTNSILLEKLELRFNQFTGILPISLGSLKNLRHLVLWQNSFLGSIPPSIGNLTLLKELYLASNQMNGQKISDSYQHL 415 (598)
Q Consensus 336 l~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~ls~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~l 415 (598)
++ +|++|++++|.+++..+..+..+++|+.|++++|++.+..+..+..+++|++|++++|.+++..
T Consensus 313 l~------~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~i~-------- 378 (844)
T 3j0a_A 313 LD------NLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALTTIH-------- 378 (844)
T ss_dssp CS------SCCEEEEESCCCSCCCSCSCSSCTTCCEEECCSCCCCCCCSSCSCSCCCCCEEEEETCCSCCCS--------
T ss_pred CC------CCCEEECCCCCCCccCHHHhcCCCCCCEEECCCCCCCccChhhhcCCCCCCEEECCCCCCCccc--------
Confidence 66 7888888888887777777788888888888888877666666777888888888888776432
Q ss_pred cCCCCCCEEEccCccCccccchHHHhcCCCCCEEEccCCcCcccCCCC-ccc-CCCCEEEcccCcCcccC----CCCCcC
Q 037325 416 KNQTELRTLVLNKARISDTISDWFWQLSLTLDELDVAYNELRGRVPNS-LGF-NFPAKVDLSFNNFEGRL----LLWSFN 489 (598)
Q Consensus 416 ~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~ls~n~~~~~~p~~-~~~-~~L~~l~ls~n~l~~~~----~~~~~~ 489 (598)
.+++|+.+++++|+++.. |.. ...++.+++++|++++..... +.. ..|+.|++++|++++.. +..+++
T Consensus 379 -~~~~L~~L~l~~N~l~~l-~~~----~~~l~~L~ls~N~l~~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~ 452 (844)
T 3j0a_A 379 -FIPSIPDIFLSGNKLVTL-PKI----NLTANLIHLSENRLENLDILYFLLRVPHLQILILNQNRFSSCSGDQTPSENPS 452 (844)
T ss_dssp -SCCSCSEEEEESCCCCCC-CCC----CTTCCEEECCSCCCCSSTTHHHHTTCTTCCEEEEESCCCCCCCSSSSSCSCTT
T ss_pred -CCCCcchhccCCCCcccc-ccc----ccccceeecccCccccCchhhhhhcCCccceeeCCCCcccccccccccccCCc
Confidence 256777777777777633 322 346777788877776532211 112 27888888888887532 334678
Q ss_pred CcEEEccCCcccccCCchhhcccCCCCCccccCCCCeEeCcCCccccccchhccCCCCCCEEECCCCcCccccchhccCC
Q 037325 490 VTKLYLRDNSFSGLIPNDIGQNLPFLTDLGNLKQLITLVISNNNLSGEIPLLFSNISFLYILDMSNNSLSGSTPESIGSL 569 (598)
Q Consensus 490 L~~L~ls~n~l~~~~p~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~l~~l 569 (598)
|+.|++++|.+++..+..+.. ..+..+++|+.|+|++|.+++..|..|.++++|++|+|++|++++..|..+.
T Consensus 453 L~~L~Ls~N~l~~~~~~~~~~-----~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~-- 525 (844)
T 3j0a_A 453 LEQLFLGENMLQLAWETELCW-----DVFEGLSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRLTVLSHNDLP-- 525 (844)
T ss_dssp CCBCEEESCCCSSSCCSCCCS-----SCSSCBCCEECCCCCHHHHTTCCTTSSSSCCSCSEEEEESCCCSSCCCCCCC--
T ss_pred cccccCCCCccccccccccch-----hhhcCcccccEEECCCCcccccChhHccchhhhheeECCCCCCCccChhhhh--
Confidence 888888888886333221110 1124478889999999999888888888899999999999999876666655
Q ss_pred CCCCEEEccCCCCcccCCcCccCcC
Q 037325 570 RTVKFLVLRNNYLSGKLPLSLKNCT 594 (598)
Q Consensus 570 ~~L~~L~l~~n~l~g~~P~~~~~~~ 594 (598)
++|+.|++++|++++.+|..+.+++
T Consensus 526 ~~L~~L~Ls~N~l~~~~~~~~~~L~ 550 (844)
T 3j0a_A 526 ANLEILDISRNQLLAPNPDVFVSLS 550 (844)
T ss_dssp SCCCEEEEEEECCCCCCSCCCSSCC
T ss_pred ccccEEECCCCcCCCCChhHhCCcC
Confidence 7899999999999988888776554
|
| >1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.9e-48 Score=427.79 Aligned_cols=470 Identities=20% Similarity=0.168 Sum_probs=244.6
Q ss_pred CcEEEEEcCCCCCCCCCCcccCCCCCcceecCccccCCCCCCEEeCCCCCCCCCCcchhccCCCCCCEEECcCCCCCccc
Q 037325 75 ASVIKLNLNNPFRDSFGSFEDDAGHELGGEISPSLLQLKDLEYLDLSMNNFTGFQVPEFIGSLKELRYLNLSGSFFSGTI 154 (598)
Q Consensus 75 ~~v~~L~L~~~~~~~~~~~~~~~~~~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~p~~~~~l~~L~~L~L~~n~l~~~~ 154 (598)
.+++.|++++ +.+.+..|..+.++++|++|+|++|.++.. .+..+.++++|++|++++|++++..
T Consensus 49 ~~L~~L~Ls~--------------n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l-~~~~~~~l~~L~~L~L~~n~l~~~~ 113 (680)
T 1ziw_A 49 SQLTSLDVGF--------------NTISKLEPELCQKLPMLKVLNLQHNELSQL-SDKTFAFCTNLTELHLMSNSIQKIK 113 (680)
T ss_dssp TTCSEEECCS--------------SCCCCCCTTHHHHCTTCCEEECCSSCCCCC-CTTTTTTCTTCSEEECCSSCCCCCC
T ss_pred CcCcEEECCC--------------CccCccCHHHHhcccCcCEEECCCCccCcc-ChhhhccCCCCCEEECCCCccCccC
Confidence 4678888887 455555555566666666666666665532 2224555666666666666665444
Q ss_pred chhccCCCCCCEEEccCCCCCCCccChhhhcCCCCCcEEEcCCCCCCCCcccchHhhh--cCCCCCEEEcCCCCCCCCCC
Q 037325 155 PQTLGNLSNLLYLDLNNFLDQSNQIDLEWLSGLSSLVYFNLGGADLSKAGAYWLEVFN--KLHSFVELHLPNCNLPSLPL 232 (598)
Q Consensus 155 p~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~--~l~~L~~L~l~~~~l~~~~~ 232 (598)
|..|+++++|++|++++|.+.... ...+.++++|++|++++|.+.+.. +..+. .+++|++|++++|.+++.++
T Consensus 114 ~~~~~~l~~L~~L~Ls~n~l~~~~--~~~~~~l~~L~~L~L~~n~l~~~~---~~~~~~~~~~~L~~L~L~~n~l~~~~~ 188 (680)
T 1ziw_A 114 NNPFVKQKNLITLDLSHNGLSSTK--LGTQVQLENLQELLLSNNKIQALK---SEELDIFANSSLKKLELSSNQIKEFSP 188 (680)
T ss_dssp SCTTTTCTTCCEEECCSSCCSCCC--CCSSSCCTTCCEEECCSSCCCCBC---HHHHGGGTTCEESEEECTTCCCCCBCT
T ss_pred hhHccccCCCCEEECCCCcccccC--chhhcccccCCEEEccCCcccccC---HHHhhccccccccEEECCCCcccccCh
Confidence 455566666666666665443221 122445555555555555555443 22222 23445555555554444332
Q ss_pred C--------------------------------------------------CCcCCCC--CccEEEccCCCCCCCcchhh
Q 037325 233 S--------------------------------------------------FPSLNFA--SLQVLDLSNNDFNSTTPHWL 260 (598)
Q Consensus 233 ~--------------------------------------------------~~~~~l~--~L~~L~L~~n~l~~~~~~~l 260 (598)
. ..+..++ +|++|++++|++++..+..+
T Consensus 189 ~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~l~~~~L~~L~Ls~n~l~~~~~~~~ 268 (680)
T 1ziw_A 189 GCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSF 268 (680)
T ss_dssp TGGGGSSEECEEECTTCCCHHHHHHHHHHHHTTSCCCEEECTTSCCCEECTTTTGGGGGSCCCEEECTTSCCCEECTTTT
T ss_pred hhhhhhhhhhhhhccccccChhhHHHHHHHhhhccccEEEccCCcccccChhHhhccCcCCCCEEECCCCCcCccCcccc
Confidence 1 2222232 36666666666666666666
Q ss_pred hcCCCCCEEEccCCcccccCCccccCCCCccEEECcCCCcCcc-----ccch----hhcCCCCCCEEecccccCCcccch
Q 037325 261 FNITSLLCLDLGSNDLQGDIPDGFASLNSLQELDLSGNSFLGG-----QLSR----NLGKLCNLRTMILSRNNISSEVSD 331 (598)
Q Consensus 261 ~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~-----~~~~----~l~~l~~L~~L~l~~n~l~~~~~~ 331 (598)
..+++|++|++++|.+.+..|..+..+++|+.|++++|. ..+ .+|. .+..+++|++|++++|.+.+..+.
T Consensus 269 ~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~~~-~~~~~~~~~lp~i~~~~~~~l~~L~~L~l~~n~l~~~~~~ 347 (680)
T 1ziw_A 269 AWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSF-TKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSN 347 (680)
T ss_dssp TTCTTCCEEECCSCCBSEECTTTTTTCTTCCEEECTTCB-CCC------CCEECTTTTTTCTTCCEEECCSCCBCCCCTT
T ss_pred cCcccccEeeCCCCccCccChhhhcCCCCccEEeccchh-hhcccccccccccChhhcccCCCCCEEECCCCccCCCChh
Confidence 666677777777776666666666666666666666553 221 2222 566677788888888888777766
Q ss_pred hhhCCCCCCCCCCccEEEccCccccccC--ccccCC--CCCCCEEEccCCcCCccchhhccCCCCCCEEeCcCCcCCccc
Q 037325 332 FLDGLSECTNSILLEKLELRFNQFTGIL--PISLGS--LKNLRHLVLWQNSFLGSIPPSIGNLTLLKELYLASNQMNGQK 407 (598)
Q Consensus 332 ~~~~l~~~~~~~~L~~L~Ls~n~l~~~~--~~~l~~--l~~L~~L~ls~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~ 407 (598)
.+..++ +|++|++++|.+.... ...+.. .++|+.|++++|++.+..|..+..+++|++|++++|.+++..
T Consensus 348 ~~~~l~------~L~~L~Ls~n~~~~~~l~~~~f~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~ 421 (680)
T 1ziw_A 348 MFTGLI------NLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQEL 421 (680)
T ss_dssp TTTTCT------TCCEEECTTCBSCCCEECTTTTGGGTTSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCEEEC
T ss_pred Hhcccc------CCcEEECCCCchhhhhcchhhhcccccCcCceEECCCCCCCeEChhhhhCCCCCCEEeCCCCcCcccc
Confidence 666665 5666666555432111 111111 134555555555555444444555555555555555544433
Q ss_pred CCCchhhhcCCCCCCEEEccCccCccccchHHHh-------------------------cCCCCCEEEccCCcCcccCCC
Q 037325 408 ISDSYQHLKNQTELRTLVLNKARISDTISDWFWQ-------------------------LSLTLDELDVAYNELRGRVPN 462 (598)
Q Consensus 408 ~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~-------------------------~~~~L~~L~ls~n~~~~~~p~ 462 (598)
+. ..+..+++|+.|++++|++.+..+..+.. .+++|++|++++|++++..+.
T Consensus 422 -~~--~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~p~~~~~l~~L~~L~Ls~N~l~~i~~~ 498 (680)
T 1ziw_A 422 -TG--QEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDD 498 (680)
T ss_dssp -CS--GGGTTCTTCCEEECCSCSEEECCTTTTTTCTTCCEEECTTSCCBCTTCSSCTTTTCTTCCEEECCSSCCCCCCTT
T ss_pred -Cc--ccccCcccccEEecCCCCcceeChhhhhcCcccccchhccccccccccCCcccccCCCCCEEECCCCCCCcCChh
Confidence 11 12344444555555555444433333322 144555555555555544444
Q ss_pred CcccC-CCCEEEcccCcCcccC-----------CCCCcCCcEEEccCCcccccCCc-hhhcccCCCCCccccCCCCeEeC
Q 037325 463 SLGFN-FPAKVDLSFNNFEGRL-----------LLWSFNVTKLYLRDNSFSGLIPN-DIGQNLPFLTDLGNLKQLITLVI 529 (598)
Q Consensus 463 ~~~~~-~L~~l~ls~n~l~~~~-----------~~~~~~L~~L~ls~n~l~~~~p~-~~~~~~~~~~~~~~l~~L~~L~L 529 (598)
.+... .|+.|++++|++++.. ...+++|++|++++|+++ .+|. .+.. +++|+.|+|
T Consensus 499 ~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~N~l~-~i~~~~~~~----------l~~L~~L~L 567 (680)
T 1ziw_A 499 MLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFD-EIPVEVFKD----------LFELKIIDL 567 (680)
T ss_dssp TTTTCTTCCEEECCSSCCGGGGSTTSTTSCCCTTTTCTTCCEEECCSSCCC-CCCTTTTTT----------CTTCCEEEC
T ss_pred hhccccccCEEeCCCCCccccchhhccCCcchhhcCCCCCCEEECCCCCCC-CCCHHHccc----------ccCcceeEC
Confidence 34333 4555555555554321 112345555555555554 3332 2222 555556666
Q ss_pred cCCccccccchhccCCCCCCEEECCCCcCccccchhcc-CCCCCCEEEccCCCCccc
Q 037325 530 SNNNLSGEIPLLFSNISFLYILDMSNNSLSGSTPESIG-SLRTVKFLVLRNNYLSGK 585 (598)
Q Consensus 530 s~N~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~l~-~l~~L~~L~l~~n~l~g~ 585 (598)
++|++++..+..|.++++|++|++++|++++..|..+. .+++|+.+++++|++.+.
T Consensus 568 s~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~l~l~~N~~~c~ 624 (680)
T 1ziw_A 568 GLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEKKVFGPAFRNLTELDMRFNPFDCT 624 (680)
T ss_dssp CSSCCCCCCTTTTTTCTTCCEEECTTSCCCBCCHHHHHHHHTTCSEEECTTCCCCBC
T ss_pred CCCCCCcCCHhHhCCCCCCCEEECCCCcCCccChhHhcccccccCEEEccCCCcccC
Confidence 66655544444455555566666666655555554444 455555666666655543
|
| >2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=6.2e-48 Score=414.51 Aligned_cols=485 Identities=19% Similarity=0.188 Sum_probs=382.5
Q ss_pred CCcccEEecCC-----------CCcEEEEEcCCCCCCCCCCcccCCCCCcceecCccccCCCCCCEEeCCCCCCCCCCcc
Q 037325 63 CSWSGVSCNNR-----------TASVIKLNLNNPFRDSFGSFEDDAGHELGGEISPSLLQLKDLEYLDLSMNNFTGFQVP 131 (598)
Q Consensus 63 c~w~gv~c~~~-----------~~~v~~L~L~~~~~~~~~~~~~~~~~~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~p 131 (598)
|.|.|| |+.. ..+++.|++++ +.+++..|..+.++++|++|++++|++++. .|
T Consensus 4 C~~~~~-c~~~~~~l~~ip~~~~~~L~~L~Ls~--------------n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~-~~ 67 (549)
T 2z81_A 4 CDASGV-CDGRSRSFTSIPSGLTAAMKSLDLSF--------------NKITYIGHGDLRACANLQVLILKSSRINTI-EG 67 (549)
T ss_dssp ECTTSE-EECTTSCCSSCCSCCCTTCCEEECCS--------------SCCCEECSSTTSSCTTCCEEECTTSCCCEE-CT
T ss_pred CCCCce-EECCCCccccccccCCCCccEEECcC--------------CccCccChhhhhcCCcccEEECCCCCcCcc-Ch
Confidence 777777 6532 24688888888 788888889999999999999999999975 66
Q ss_pred hhccCCCCCCEEECcCCCCCcccchhccCCCCCCEEEccCCCCCCCccChhhhcCCCCCcEEEcCCCCCCCCcccchHhh
Q 037325 132 EFIGSLKELRYLNLSGSFFSGTIPQTLGNLSNLLYLDLNNFLDQSNQIDLEWLSGLSSLVYFNLGGADLSKAGAYWLEVF 211 (598)
Q Consensus 132 ~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~ 211 (598)
..+.++++|++|++++|++++..|..|+++++|++|++++|.+..... ...+.++++|++|++++|.+.+..+ +..+
T Consensus 68 ~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~-~~~~~~l~~L~~L~L~~n~~~~~~~--~~~~ 144 (549)
T 2z81_A 68 DAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGV-TSLFPNLTNLQTLRIGNVETFSEIR--RIDF 144 (549)
T ss_dssp TTTTTCTTCCEEECTTSCCCSCCHHHHTTCTTCCEEECTTCCCSSSCS-SCSCTTCTTCCEEEEEESSSCCEEC--TTTT
T ss_pred hhccccccCCEEECCCCccCccCHHHhccCCCCcEEECCCCcccccch-hhhhhccCCccEEECCCCccccccC--Hhhh
Confidence 789999999999999999997777779999999999999997753221 2357899999999999998443321 4678
Q ss_pred hcCCCCCEEEcCCCCCCCCCCCCCcCCCCCccEEEccCCCCCCCcchhhhcCCCCCEEEccCCcccccC--C-ccccCCC
Q 037325 212 NKLHSFVELHLPNCNLPSLPLSFPSLNFASLQVLDLSNNDFNSTTPHWLFNITSLLCLDLGSNDLQGDI--P-DGFASLN 288 (598)
Q Consensus 212 ~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~--~-~~l~~l~ 288 (598)
..+++|++|++++|.+++..+ ..+..+++|++|+++.|.+.......+..+++|++|++++|.+++.. + .....++
T Consensus 145 ~~l~~L~~L~L~~n~l~~~~~-~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~ 223 (549)
T 2z81_A 145 AGLTSLNELEIKALSLRNYQS-QSLKSIRDIHHLTLHLSESAFLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSS 223 (549)
T ss_dssp TTCCEEEEEEEEETTCCEECT-TTTTTCSEEEEEEEECSBSTTHHHHHHHSTTTBSEEEEESCBCTTCCCCCCSSCCCCC
T ss_pred hcccccCeeeccCCcccccCh-hhhhccccCceEecccCcccccchhhHhhcccccEEEccCCccccccccccchhhhhh
Confidence 899999999999999998766 66778899999999999886443333467899999999999998642 2 2234578
Q ss_pred CccEEECcCCCcCcccc----chhhcCCCCCCEEecccccCCcccchhhhCCCCCCCCCCccEEEccCccccccC-----
Q 037325 289 SLQELDLSGNSFLGGQL----SRNLGKLCNLRTMILSRNNISSEVSDFLDGLSECTNSILLEKLELRFNQFTGIL----- 359 (598)
Q Consensus 289 ~L~~L~l~~n~~~~~~~----~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~~~~~~~L~~L~Ls~n~l~~~~----- 359 (598)
+|+.|++++|. +.+.. +..+..+++|+.+++++|.+.+................+++.|++.++.+....
T Consensus 224 ~L~~L~l~~n~-l~~~~~~~l~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~l 302 (549)
T 2z81_A 224 PMKKLAFRGSV-LTDESFNELLKLLRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDL 302 (549)
T ss_dssp CCCEEEEESCE-EEHHHHHHHHGGGGGCTTCCEEEEESCEEECCSCCCCCTTTCCCCCTTCCEEEEESCBCSCGGGSCCC
T ss_pred cccceeccccc-cchhHHHHHHHHhhhhccccccccccccccccccccccchhhhhhhcccccccccccccchhhhcccc
Confidence 89999999998 44433 334567889999999999876642211001111122237999999988765321
Q ss_pred ccccCCCCCCCEEEccCCcCCccchhhc-cCCCCCCEEeCcCCcCCcccCCCchhhhcCCCCCCEEEccCccCccccc-h
Q 037325 360 PISLGSLKNLRHLVLWQNSFLGSIPPSI-GNLTLLKELYLASNQMNGQKISDSYQHLKNQTELRTLVLNKARISDTIS-D 437 (598)
Q Consensus 360 ~~~l~~l~~L~~L~ls~n~l~~~~~~~l-~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~-~ 437 (598)
+......++|+.|++++|++. .+|..+ ..+++|++|++++|.+++.. +.....+..+++|+.|++++|++++..+ .
T Consensus 303 ~~~~~~~~~L~~L~l~~n~l~-~ip~~~~~~l~~L~~L~Ls~N~l~~~~-~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~ 380 (549)
T 2z81_A 303 STVYSLLEKVKRITVENSKVF-LVPCSFSQHLKSLEFLDLSENLMVEEY-LKNSACKGAWPSLQTLVLSQNHLRSMQKTG 380 (549)
T ss_dssp CHHHHHSTTCCEEEEESSCCC-CCCHHHHHHCTTCCEEECCSSCCCHHH-HHHHTCTTSSTTCCEEECTTSCCCCHHHHH
T ss_pred hhhhhhcccceEEEeccCccc-cCCHHHHhcCccccEEEccCCcccccc-ccchhhhhccccCcEEEccCCcccccccch
Confidence 112233578999999999987 666665 57999999999999998765 3222346788999999999999987643 1
Q ss_pred HHHhcCCCCCEEEccCCcCcccCCCCcccC-CCCEEEcccCcCcccCCCCCcCCcEEEccCCcccccCCchhhcccCCCC
Q 037325 438 WFWQLSLTLDELDVAYNELRGRVPNSLGFN-FPAKVDLSFNNFEGRLLLWSFNVTKLYLRDNSFSGLIPNDIGQNLPFLT 516 (598)
Q Consensus 438 ~~~~~~~~L~~L~ls~n~~~~~~p~~~~~~-~L~~l~ls~n~l~~~~~~~~~~L~~L~ls~n~l~~~~p~~~~~~~~~~~ 516 (598)
.....+++|++|++++|+++ .+|..+... .|++|++++|++++......++|++||+++|++++.+ ..
T Consensus 381 ~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~~~~L~~L~Ls~N~l~~l~~~~~~~L~~L~Ls~N~l~~~~----~~------ 449 (549)
T 2z81_A 381 EILLTLKNLTSLDISRNTFH-PMPDSCQWPEKMRFLNLSSTGIRVVKTCIPQTLEVLDVSNNNLDSFS----LF------ 449 (549)
T ss_dssp HHGGGCTTCCEEECTTCCCC-CCCSCCCCCTTCCEEECTTSCCSCCCTTSCTTCSEEECCSSCCSCCC----CC------
T ss_pred hhhhcCCCCCEEECCCCCCc-cCChhhcccccccEEECCCCCcccccchhcCCceEEECCCCChhhhc----cc------
Confidence 33344899999999999998 577777665 8999999999998543334579999999999999643 22
Q ss_pred CccccCCCCeEeCcCCccccccchhccCCCCCCEEECCCCcCccccchhccCCCCCCEEEccCCCCcccCC
Q 037325 517 DLGNLKQLITLVISNNNLSGEIPLLFSNISFLYILDMSNNSLSGSTPESIGSLRTVKFLVLRNNYLSGKLP 587 (598)
Q Consensus 517 ~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~l~~l~~L~~L~l~~n~l~g~~P 587 (598)
+++|++|+|++|+++ .+|. .+.+++|++|++++|++++..|..+..+++|+.|++++|++++..|
T Consensus 450 ----l~~L~~L~Ls~N~l~-~ip~-~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~ 514 (549)
T 2z81_A 450 ----LPRLQELYISRNKLK-TLPD-ASLFPVLLVMKISRNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 514 (549)
T ss_dssp ----CTTCCEEECCSSCCS-SCCC-GGGCTTCCEEECCSSCCCCCCTTGGGGCTTCCEEECCSSCBCCCHH
T ss_pred ----CChhcEEECCCCccC-cCCC-cccCccCCEEecCCCccCCcCHHHHhcCcccCEEEecCCCccCCCc
Confidence 789999999999999 7887 5789999999999999999888899999999999999999998777
|
| >3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.7e-47 Score=415.98 Aligned_cols=461 Identities=21% Similarity=0.126 Sum_probs=319.4
Q ss_pred CCcceecCccccCCCCCCEEeCCCCCCCCCCcchhccCCCCCCEEECcCCCCCcccchhccCCCCCCEEEccCCCCCCCc
Q 037325 99 HELGGEISPSLLQLKDLEYLDLSMNNFTGFQVPEFIGSLKELRYLNLSGSFFSGTIPQTLGNLSNLLYLDLNNFLDQSNQ 178 (598)
Q Consensus 99 ~~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~~~~~~ 178 (598)
.+++ .+|..+. +++++|+|++|.+++. .+..+.++++|++|++++|.+++..|..|.++++|++|++++|.+...
T Consensus 21 ~~l~-~ip~~~~--~~l~~L~Ls~n~l~~~-~~~~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~n~l~~~- 95 (606)
T 3vq2_A 21 QKLS-KVPDDIP--SSTKNIDLSFNPLKIL-KSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSF- 95 (606)
T ss_dssp SCCS-SCCTTSC--TTCCEEECTTSCCCEE-CTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCCC-
T ss_pred CCcc-cCCCCCC--CCcCEEECCCCCcCEe-ChhhccCCccCcEEeCCCCcccccCHHHhhchhhcCEeECCCCccccc-
Confidence 3443 3454443 8999999999999975 666899999999999999999977788999999999999999876543
Q ss_pred cChhhhcCCCCCcEEEcCCCCCCCCcccchHhhhcCCCCCEEEcCCCCCCCCCCCCCcCCCCCccEEEccCCCCCCCcch
Q 037325 179 IDLEWLSGLSSLVYFNLGGADLSKAGAYWLEVFNKLHSFVELHLPNCNLPSLPLSFPSLNFASLQVLDLSNNDFNSTTPH 258 (598)
Q Consensus 179 ~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~ 258 (598)
....+.++++|++|++++|.+.... +..+.++++|++|++++|.+++......+.++++|++|++++|++++..+.
T Consensus 96 -~p~~~~~l~~L~~L~L~~n~l~~~~---~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n~l~~~~~~ 171 (606)
T 3vq2_A 96 -SPGSFSGLTSLENLVAVETKLASLE---SFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVN 171 (606)
T ss_dssp -CTTSSTTCTTCCEEECTTSCCCCSS---SSCCTTCTTCCEEECCSSCCCCCCCCGGGGTCTTCCEEECCSSCCCEECTT
T ss_pred -ChhhcCCcccCCEEEccCCcccccc---ccccCCCCCCCEEeCCCCcccceechHhHhhcCCCCEEEccCCcceecChh
Confidence 2345899999999999999998876 356899999999999999998754336788999999999999999988887
Q ss_pred hhhcCCCCC----EEEccCCcccccCCccccCCCCccEEECcCCCcCccccchhhcCCCCCCEE----------------
Q 037325 259 WLFNITSLL----CLDLGSNDLQGDIPDGFASLNSLQELDLSGNSFLGGQLSRNLGKLCNLRTM---------------- 318 (598)
Q Consensus 259 ~l~~l~~L~----~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~l~~l~~L~~L---------------- 318 (598)
.+..+++|+ .+++++|.+++..+..+.. .+|++|++++|.+..+..+..+..++.++.+
T Consensus 172 ~~~~l~~L~~~l~~L~l~~n~l~~~~~~~~~~-~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~l~~~ 250 (606)
T 3vq2_A 172 DLQFLRENPQVNLSLDMSLNPIDFIQDQAFQG-IKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIF 250 (606)
T ss_dssp TTHHHHHCTTCCCEEECTTCCCCEECTTTTTT-CEEEEEEEESCCSCHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCC
T ss_pred hhhhhhccccccceeeccCCCcceeCcccccC-ceeeeeeccCCccchhHHHHHhccccccccccccccccccCCccccc
Confidence 777666554 8999999998655554544 4899999999974334444455555544444
Q ss_pred ----------------------------------------ecccccCCcccchhhhCCCCCCCCCCccEEEccCcccccc
Q 037325 319 ----------------------------------------ILSRNNISSEVSDFLDGLSECTNSILLEKLELRFNQFTGI 358 (598)
Q Consensus 319 ----------------------------------------~l~~n~l~~~~~~~~~~l~~~~~~~~L~~L~Ls~n~l~~~ 358 (598)
+++++.+.... .+..++ +|++|++++|.+ +.
T Consensus 251 ~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~--~l~~~~------~L~~L~l~~n~l-~~ 321 (606)
T 3vq2_A 251 EPSIMEGLCDVTIDEFRLTYTNDFSDDIVKFHCLANVSAMSLAGVSIKYLE--DVPKHF------KWQSLSIIRCQL-KQ 321 (606)
T ss_dssp CGGGGTTGGGSEEEEEEECCCTTCCGGGGSCGGGTTCSEEEEESCCCCCCC--CCCTTC------CCSEEEEESCCC-SS
T ss_pred ChHHhhhhhhccHhheeccccccccccccccccCCCCCEEEecCccchhhh--hccccc------cCCEEEcccccC-cc
Confidence 44444332211 222222 455555555555 34
Q ss_pred CccccCCCCCCCEEEccCCcCCccchhhccCCCCCCEEeCcCCcCCcccCCCchhhhcCCCCCCEEEccCccCccccchH
Q 037325 359 LPISLGSLKNLRHLVLWQNSFLGSIPPSIGNLTLLKELYLASNQMNGQKISDSYQHLKNQTELRTLVLNKARISDTISDW 438 (598)
Q Consensus 359 ~~~~l~~l~~L~~L~ls~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~ 438 (598)
+| .+ .+++|++|++++|+..+.. .+..+++|++|++++|.+++.... ...+..+++|+.|++++|++.+. |..
T Consensus 322 lp-~~-~l~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~ls~n~l~~~~~~--~~~~~~~~~L~~L~L~~n~l~~~-~~~ 394 (606)
T 3vq2_A 322 FP-TL-DLPFLKSLTLTMNKGSISF--KKVALPSLSYLDLSRNALSFSGCC--SYSDLGTNSLRHLDLSFNGAIIM-SAN 394 (606)
T ss_dssp CC-CC-CCSSCCEEEEESCSSCEEC--CCCCCTTCCEEECCSSCEEEEEEC--CHHHHCCSCCCEEECCSCSEEEE-CCC
T ss_pred cc-cC-CCCccceeeccCCcCccch--hhccCCCCCEEECcCCccCCCcch--hhhhccCCcccEeECCCCccccc-hhh
Confidence 44 22 5555555555555433322 344555566666666555443100 12345556666666666665542 222
Q ss_pred HHhcCCCCCEEEccCCcCcccCC-CCcccC-CCCEEEcccCcCcccCCCC---CcCCcEEEccCCccccc-CCchhhccc
Q 037325 439 FWQLSLTLDELDVAYNELRGRVP-NSLGFN-FPAKVDLSFNNFEGRLLLW---SFNVTKLYLRDNSFSGL-IPNDIGQNL 512 (598)
Q Consensus 439 ~~~~~~~L~~L~ls~n~~~~~~p-~~~~~~-~L~~l~ls~n~l~~~~~~~---~~~L~~L~ls~n~l~~~-~p~~~~~~~ 512 (598)
+.. +++|++|++++|++.+..| ..+... .|+.+++++|.+.+..|.. +++|++|++++|++++. +|..+..
T Consensus 395 ~~~-l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~-- 471 (606)
T 3vq2_A 395 FMG-LEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFAN-- 471 (606)
T ss_dssp CTT-CTTCCEEECTTSEEESTTTTTTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTT--
T ss_pred ccC-CCCCCeeECCCCccCCccChhhhhccccCCEEECcCCCCCccchhhhcCCCCCCEEECCCCcCCCcchHHhhcc--
Confidence 322 4566666666666665555 334333 6666666666666555443 35666666666666653 4544444
Q ss_pred CCCCCccccCCCCeEeCcCCccccccchhccCCCCCCEEECCCCcCccccchhccCCCCCCEEEccCCCCcccCCcCccC
Q 037325 513 PFLTDLGNLKQLITLVISNNNLSGEIPLLFSNISFLYILDMSNNSLSGSTPESIGSLRTVKFLVLRNNYLSGKLPLSLKN 592 (598)
Q Consensus 513 ~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~l~~l~~L~~L~l~~n~l~g~~P~~~~~ 592 (598)
+++|+.|++++|.+++..|..|+++++|++|++++|++++.+|..+.++++|++|++++|+++ .+|..+..
T Consensus 472 --------l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~-~~p~~~~~ 542 (606)
T 3vq2_A 472 --------TTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIE-TSKGILQH 542 (606)
T ss_dssp --------CTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCEEGGGTTTCTTCCEEECTTSCCC-CEESCGGG
T ss_pred --------CCCCCEEECCCCcCCccChhhhcccccCCEEECCCCcCCCcCHHHccCCCcCCEEECCCCcCc-ccCHhHhh
Confidence 788889999999888888888888889999999999888888888888888999999999888 68877776
Q ss_pred cC-CCC
Q 037325 593 CT-FQE 597 (598)
Q Consensus 593 ~~-~L~ 597 (598)
+. +|+
T Consensus 543 l~~~L~ 548 (606)
T 3vq2_A 543 FPKSLA 548 (606)
T ss_dssp SCTTCC
T ss_pred hcccCc
Confidence 64 354
|
| >2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=3e-46 Score=403.50 Aligned_cols=467 Identities=22% Similarity=0.173 Sum_probs=377.9
Q ss_pred CCcEEEEEcCCCCCCCCCCcccCCCCCcceecCccccCCCCCCEEeCCCCCCCCCCcchhccCCCCCCEEECcCCCCCcc
Q 037325 74 TASVIKLNLNNPFRDSFGSFEDDAGHELGGEISPSLLQLKDLEYLDLSMNNFTGFQVPEFIGSLKELRYLNLSGSFFSGT 153 (598)
Q Consensus 74 ~~~v~~L~L~~~~~~~~~~~~~~~~~~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~p~~~~~l~~L~~L~L~~n~l~~~ 153 (598)
..+++.|++++ +.+++..+..|.++++|++|+|++|++++. .|..+.++++|++|++++|.+++.
T Consensus 27 ~~~l~~L~Ls~--------------n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~i-~~~~~~~l~~L~~L~L~~n~l~~~ 91 (570)
T 2z63_A 27 PFSTKNLDLSF--------------NPLRHLGSYSFFSFPELQVLDLSRCEIQTI-EDGAYQSLSHLSTLILTGNPIQSL 91 (570)
T ss_dssp CSSCCEEECCS--------------CCCCEECTTTTTTCSSCCEEECTTCCCCEE-CTTTTTTCTTCCEEECTTCCCCEE
T ss_pred cccccEEEccC--------------CccCccChhHhhCCCCceEEECCCCcCCcc-CcccccCchhCCEEeCcCCcCCcc
Confidence 34688899988 788888888999999999999999999865 567789999999999999999877
Q ss_pred cchhccCCCCCCEEEccCCCCCCCccChhhhcCCCCCcEEEcCCCCCCCCcccchHhhhcCCCCCEEEcCCCCCCCCCCC
Q 037325 154 IPQTLGNLSNLLYLDLNNFLDQSNQIDLEWLSGLSSLVYFNLGGADLSKAGAYWLEVFNKLHSFVELHLPNCNLPSLPLS 233 (598)
Q Consensus 154 ~p~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~ 233 (598)
.|..|+++++|++|++++|.+..... ..+.++++|++|++++|.+.... ++..+.++++|++|++++|.+++.++
T Consensus 92 ~~~~~~~l~~L~~L~L~~n~l~~l~~--~~~~~l~~L~~L~L~~n~l~~~~--lp~~~~~l~~L~~L~l~~n~l~~~~~- 166 (570)
T 2z63_A 92 ALGAFSGLSSLQKLVAVETNLASLEN--FPIGHLKTLKELNVAHNLIQSFK--LPEYFSNLTNLEHLDLSSNKIQSIYC- 166 (570)
T ss_dssp CTTTTTTCTTCCEEECTTSCCCCSTT--CSCTTCTTCCEEECCSSCCCCCC--CCGGGGGCTTCCEEECTTSCCCEECG-
T ss_pred CHhhhcCccccccccccccccccCCC--ccccccccccEEecCCCccceec--ChhhhcccCCCCEEeCcCCccceecH-
Confidence 77889999999999999987654332 13788999999999999988642 15788899999999999999988765
Q ss_pred CCcCCCCCc----cEEEccCCCCCCCcchhhhcCCCCCEEEccCCcccc-cCCccccCCC--------------------
Q 037325 234 FPSLNFASL----QVLDLSNNDFNSTTPHWLFNITSLLCLDLGSNDLQG-DIPDGFASLN-------------------- 288 (598)
Q Consensus 234 ~~~~~l~~L----~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~-~~~~~l~~l~-------------------- 288 (598)
..+..+++| +.+++++|.+++..+..+... +|+.|++++|.... .++..+..++
T Consensus 167 ~~~~~l~~L~~~~~~L~l~~n~l~~~~~~~~~~~-~L~~L~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~ 245 (570)
T 2z63_A 167 TDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEI-RLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEK 245 (570)
T ss_dssp GGGHHHHTCTTCCCEEECTTCCCCEECTTTTTTC-EEEEEEEESCCSCTTHHHHHHHTTTTCEEEEEEEEECCCCSSCEE
T ss_pred HHccchhccchhhhhcccCCCCceecCHHHhccC-cceeEecccccccccchhhhhcCccccceeeeccccccCchhhhh
Confidence 455666677 889999999988777766655 78899888874221 1111111111
Q ss_pred ------------CccEEECcCCCcCccccchhhcCCCCCCEEecccccCCcccchhhhCCCCCCCCCCccEEEccCcccc
Q 037325 289 ------------SLQELDLSGNSFLGGQLSRNLGKLCNLRTMILSRNNISSEVSDFLDGLSECTNSILLEKLELRFNQFT 356 (598)
Q Consensus 289 ------------~L~~L~l~~n~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~~~~~~~L~~L~Ls~n~l~ 356 (598)
.++.+++.++....+..+..+..+++|++|++++|.+.+ .|..+..+ +|++|++++|.+.
T Consensus 246 ~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~-l~~~~~~~-------~L~~L~l~~n~~~ 317 (570)
T 2z63_A 246 FDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIER-VKDFSYNF-------GWQHLELVNCKFG 317 (570)
T ss_dssp CCTTTTGGGGGSEEEEEEEEETTEEESCSTTTTGGGTTCSEEEEESCEECS-CCBCCSCC-------CCSEEEEESCBCS
T ss_pred cchhhhccccccchhhhhhhcchhhhhhchhhhcCcCcccEEEecCccchh-hhhhhccC-------CccEEeeccCccc
Confidence 245566666622556677888899999999999998875 44333332 5999999999998
Q ss_pred ccCccccCCCCCCCEEEccCCcCCccchhhccCCCCCCEEeCcCCcCCcccCCCchhhhcCCCCCCEEEccCccCccccc
Q 037325 357 GILPISLGSLKNLRHLVLWQNSFLGSIPPSIGNLTLLKELYLASNQMNGQKISDSYQHLKNQTELRTLVLNKARISDTIS 436 (598)
Q Consensus 357 ~~~~~~l~~l~~L~~L~ls~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~ 436 (598)
.+|. ..+++|+.|++++|.+.+..+. ..+++|++|++++|.+++... ....+..+++|+.|++++|++.+..+
T Consensus 318 -~l~~--~~l~~L~~L~l~~n~~~~~~~~--~~~~~L~~L~l~~n~l~~~~~--~~~~~~~~~~L~~L~l~~n~l~~~~~ 390 (570)
T 2z63_A 318 -QFPT--LKLKSLKRLTFTSNKGGNAFSE--VDLPSLEFLDLSRNGLSFKGC--CSQSDFGTTSLKYLDLSFNGVITMSS 390 (570)
T ss_dssp -SCCB--CBCSSCCEEEEESCBSCCBCCC--CBCTTCCEEECCSSCCBEEEE--EEHHHHTCSCCCEEECCSCSEEEEEE
T ss_pred -ccCc--ccccccCEEeCcCCcccccccc--ccCCCCCEEeCcCCccCcccc--ccccccccCccCEEECCCCccccccc
Confidence 5554 5789999999999998876654 788999999999999876521 11357788999999999999987666
Q ss_pred hHHHhcCCCCCEEEccCCcCcccCCC-CcccC-CCCEEEcccCcCcccCCCC---CcCCcEEEccCCccc-ccCCchhhc
Q 037325 437 DWFWQLSLTLDELDVAYNELRGRVPN-SLGFN-FPAKVDLSFNNFEGRLLLW---SFNVTKLYLRDNSFS-GLIPNDIGQ 510 (598)
Q Consensus 437 ~~~~~~~~~L~~L~ls~n~~~~~~p~-~~~~~-~L~~l~ls~n~l~~~~~~~---~~~L~~L~ls~n~l~-~~~p~~~~~ 510 (598)
. +. .+++|++|++++|.+.+..|. .+... .|+.+++++|.+.+..|.. +++|++|++++|+++ +.+|..+..
T Consensus 391 ~-~~-~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~ 468 (570)
T 2z63_A 391 N-FL-GLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTE 468 (570)
T ss_dssp E-EE-TCTTCCEEECTTSEEESCTTSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTT
T ss_pred c-cc-ccCCCCEEEccCCccccccchhhhhcCCCCCEEeCcCCcccccchhhhhcCCcCcEEECcCCcCccccchhhhhc
Confidence 5 33 478999999999999987663 44444 8999999999999877654 689999999999997 578877766
Q ss_pred ccCCCCCccccCCCCeEeCcCCccccccchhccCCCCCCEEECCCCcCccccchhccCCCCCCEEEccCCCCcccCCc
Q 037325 511 NLPFLTDLGNLKQLITLVISNNNLSGEIPLLFSNISFLYILDMSNNSLSGSTPESIGSLRTVKFLVLRNNYLSGKLPL 588 (598)
Q Consensus 511 ~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~l~~l~~L~~L~l~~n~l~g~~P~ 588 (598)
+++|+.|++++|++++..|..|.++++|++|++++|++++..|..+.++++|+.|++++|++++..|.
T Consensus 469 ----------l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~~ 536 (570)
T 2z63_A 469 ----------LRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPR 536 (570)
T ss_dssp ----------CTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTTT
T ss_pred ----------ccCCCEEECCCCccccCChhhhhcccCCCEEeCCCCcCCCCCHHHhhcccCCcEEEecCCcccCCCcc
Confidence 89999999999999988899999999999999999999988888899999999999999999998874
|
| >3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=9.6e-46 Score=415.53 Aligned_cols=456 Identities=20% Similarity=0.170 Sum_probs=381.8
Q ss_pred CcEEEEEcCCCCCCCCCCcccCCCCCcceec-CccccCCCCCCEEeCCCCCCCCCCcchhccCCCCCCEEECcCCCCCcc
Q 037325 75 ASVIKLNLNNPFRDSFGSFEDDAGHELGGEI-SPSLLQLKDLEYLDLSMNNFTGFQVPEFIGSLKELRYLNLSGSFFSGT 153 (598)
Q Consensus 75 ~~v~~L~L~~~~~~~~~~~~~~~~~~l~~~~-~~~l~~l~~L~~L~Ls~n~l~~~~~p~~~~~l~~L~~L~L~~n~l~~~ 153 (598)
.+++.|||++ +...+.+ |..|.++++|++|+|++|.+.+. .|..+.++++|++|+|++|.+++.
T Consensus 48 ~~L~~LdLs~--------------n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~-~p~~~~~l~~L~~L~Ls~n~l~~~ 112 (844)
T 3j0a_A 48 EQLQLLELGS--------------QYTPLTIDKEAFRNLPNLRILDLGSSKIYFL-HPDAFQGLFHLFELRLYFCGLSDA 112 (844)
T ss_dssp CSCSEEEECT--------------TCCCCEECTTTTSSCTTCCEEECTTCCCCEE-CTTSSCSCSSCCCEECTTCCCSSC
T ss_pred ccCeEEeCCC--------------CCCccccCHHHhcCCCCCCEEECCCCcCccc-CHhHccCCcccCEeeCcCCCCCcc
Confidence 4688899988 5556666 77899999999999999999975 789999999999999999999987
Q ss_pred cchh--ccCCCCCCEEEccCCCCCCCccChhhhcCCCCCcEEEcCCCCCCCCcccchHhhhcC--CCCCEEEcCCCCCCC
Q 037325 154 IPQT--LGNLSNLLYLDLNNFLDQSNQIDLEWLSGLSSLVYFNLGGADLSKAGAYWLEVFNKL--HSFVELHLPNCNLPS 229 (598)
Q Consensus 154 ~p~~--l~~l~~L~~L~L~~n~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~l--~~L~~L~l~~~~l~~ 229 (598)
+|.. ++++++|++|++++|.+..... ...+.++++|++|++++|.+.... +..+..+ ++|+.|++++|.+.+
T Consensus 113 ~~~~~~~~~L~~L~~L~Ls~N~l~~~~~-~~~~~~L~~L~~L~Ls~N~i~~~~---~~~l~~l~~~~L~~L~L~~n~l~~ 188 (844)
T 3j0a_A 113 VLKDGYFRNLKALTRLDLSKNQIRSLYL-HPSFGKLNSLKSIDFSSNQIFLVC---EHELEPLQGKTLSFFSLAANSLYS 188 (844)
T ss_dssp CSTTCCCSSCSSCCEEEEESCCCCCCCC-CGGGGTCSSCCEEEEESSCCCCCC---SGGGHHHHHCSSCCCEECCSBSCC
T ss_pred cccCccccccCCCCEEECCCCccccccc-chhHhhCCCCCEEECCCCcCCeeC---HHHcccccCCccceEECCCCcccc
Confidence 7766 8999999999999998754322 245899999999999999998876 4566655 899999999999888
Q ss_pred CCCCCCcCCCC------CccEEEccCCCCCCCcchhhhc--------------------------------------CCC
Q 037325 230 LPLSFPSLNFA------SLQVLDLSNNDFNSTTPHWLFN--------------------------------------ITS 265 (598)
Q Consensus 230 ~~~~~~~~~l~------~L~~L~L~~n~l~~~~~~~l~~--------------------------------------l~~ 265 (598)
..+ ..+..++ +|++|++++|.+++..+..+.. .++
T Consensus 189 ~~~-~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~~~~~~~l~~~~~~~f~~l~~~~ 267 (844)
T 3j0a_A 189 RVS-VDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAGLARSS 267 (844)
T ss_dssp CCC-CCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCCBCSSSCSSSTTGGGTTTTTTTTSC
T ss_pred ccc-cchhhcCCccccCceeEEecCCCcCchhHHHHHHhhcCcccccceecccccccccccccccCCCChhhhhccccCC
Confidence 655 3334444 3999999999877655544332 268
Q ss_pred CCEEEccCCcccccCCccccCCCCccEEECcCCCcCccccchhhcCCCCCCEEecccccCCcccchhhhCCCCCCCCCCc
Q 037325 266 LLCLDLGSNDLQGDIPDGFASLNSLQELDLSGNSFLGGQLSRNLGKLCNLRTMILSRNNISSEVSDFLDGLSECTNSILL 345 (598)
Q Consensus 266 L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~~~~~~~L 345 (598)
|+.|++++|.+.+..+..+..+++|+.|++++|. +.+..+..+..+++|++|++++|.+.+..+..+..++ +|
T Consensus 268 L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~-i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~------~L 340 (844)
T 3j0a_A 268 VRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNK-INKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLP------KV 340 (844)
T ss_dssp CCEEECTTCCCCEECSCCSSSCCCCCEEEEESCC-CCEECTTTTTTCSSCCEEEEESCCCSCCCSCSCSSCT------TC
T ss_pred ccEEECCCCcccccChhhhhcCCCCCEEECCCCc-CCCCChHHhcCCCCCCEEECCCCCCCccCHHHhcCCC------CC
Confidence 9999999999998888889999999999999999 6777788899999999999999999988888888887 89
Q ss_pred cEEEccCccccccCccccCCCCCCCEEEccCCcCCccchhhccCCCCCCEEeCcCCcCCcccCCCchhhhcCCCCCCEEE
Q 037325 346 EKLELRFNQFTGILPISLGSLKNLRHLVLWQNSFLGSIPPSIGNLTLLKELYLASNQMNGQKISDSYQHLKNQTELRTLV 425 (598)
Q Consensus 346 ~~L~Ls~n~l~~~~~~~l~~l~~L~~L~ls~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~~~~L~~L~ 425 (598)
++|++++|.+.+..+..+..+++|+.|++++|.+++. ..+++|+.|++++|+++.. +. ....++.++
T Consensus 341 ~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~i-----~~~~~L~~L~l~~N~l~~l--~~------~~~~l~~L~ 407 (844)
T 3j0a_A 341 AYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALTTI-----HFIPSIPDIFLSGNKLVTL--PK------INLTANLIH 407 (844)
T ss_dssp CEEECCSCCCCCCCSSCSCSCCCCCEEEEETCCSCCC-----SSCCSCSEEEEESCCCCCC--CC------CCTTCCEEE
T ss_pred CEEECCCCCCCccChhhhcCCCCCCEEECCCCCCCcc-----cCCCCcchhccCCCCcccc--cc------cccccceee
Confidence 9999999999988777899999999999999998842 3388999999999999854 32 246799999
Q ss_pred ccCccCccccchHHHhcCCCCCEEEccCCcCcccCCCCcc-c-CCCCEEEcccCcCcccC-----C---CCCcCCcEEEc
Q 037325 426 LNKARISDTISDWFWQLSLTLDELDVAYNELRGRVPNSLG-F-NFPAKVDLSFNNFEGRL-----L---LWSFNVTKLYL 495 (598)
Q Consensus 426 l~~n~l~~~~~~~~~~~~~~L~~L~ls~n~~~~~~p~~~~-~-~~L~~l~ls~n~l~~~~-----~---~~~~~L~~L~l 495 (598)
+++|++.+.....+...+++|++|++++|++++..+.... . ..|+.|++++|.+.+.. + ..+++|+.|+|
T Consensus 408 ls~N~l~~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~l~~L~~L~L 487 (844)
T 3j0a_A 408 LSENRLENLDILYFLLRVPHLQILILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQLAWETELCWDVFEGLSHLQVLYL 487 (844)
T ss_dssp CCSCCCCSSTTHHHHTTCTTCCEEEEESCCCCCCCSSSSSCSCTTCCBCEEESCCCSSSCCSCCCSSCSSCBCCEECCCC
T ss_pred cccCccccCchhhhhhcCCccceeeCCCCcccccccccccccCCccccccCCCCccccccccccchhhhcCcccccEEEC
Confidence 9999999865555554589999999999999976554322 2 38999999999997422 2 23688999999
Q ss_pred cCCcccccCCchhhcccCCCCCccccCCCCeEeCcCCccccccchhccCCCCCCEEECCCCcCccccchhccCCCCCCEE
Q 037325 496 RDNSFSGLIPNDIGQNLPFLTDLGNLKQLITLVISNNNLSGEIPLLFSNISFLYILDMSNNSLSGSTPESIGSLRTVKFL 575 (598)
Q Consensus 496 s~n~l~~~~p~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~l~~l~~L~~L 575 (598)
++|++++..|..+.. +++|+.|+|++|++++..|..+. ++|++|++++|++++..|..+. +|+.+
T Consensus 488 s~N~l~~~~~~~~~~----------l~~L~~L~Ls~N~l~~l~~~~~~--~~L~~L~Ls~N~l~~~~~~~~~---~L~~l 552 (844)
T 3j0a_A 488 NHNYLNSLPPGVFSH----------LTALRGLSLNSNRLTVLSHNDLP--ANLEILDISRNQLLAPNPDVFV---SLSVL 552 (844)
T ss_dssp CHHHHTTCCTTSSSS----------CCSCSEEEEESCCCSSCCCCCCC--SCCCEEEEEEECCCCCCSCCCS---SCCEE
T ss_pred CCCcccccChhHccc----------hhhhheeECCCCCCCccChhhhh--ccccEEECCCCcCCCCChhHhC---CcCEE
Confidence 999999877776666 89999999999999977776665 8999999999999999987754 78999
Q ss_pred EccCCCCccc
Q 037325 576 VLRNNYLSGK 585 (598)
Q Consensus 576 ~l~~n~l~g~ 585 (598)
++++|++.+.
T Consensus 553 ~l~~Np~~C~ 562 (844)
T 3j0a_A 553 DITHNKFICE 562 (844)
T ss_dssp EEEEECCCCS
T ss_pred EecCCCcccc
Confidence 9999998763
|
| >2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.5e-45 Score=395.12 Aligned_cols=449 Identities=23% Similarity=0.180 Sum_probs=375.4
Q ss_pred CCCCEEeCCCCCCCCCCcchhccCCCCCCEEECcCCCCCcccchhccCCCCCCEEEccCCCCCCCccChhhhcCCCCCcE
Q 037325 113 KDLEYLDLSMNNFTGFQVPEFIGSLKELRYLNLSGSFFSGTIPQTLGNLSNLLYLDLNNFLDQSNQIDLEWLSGLSSLVY 192 (598)
Q Consensus 113 ~~L~~L~Ls~n~l~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~~l~~L~~ 192 (598)
+++++|++++|.+++. .+..+.++++|++|++++|++++..|..|+++++|++|++++|.+... ....+.++++|++
T Consensus 28 ~~l~~L~Ls~n~l~~~-~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~--~~~~~~~l~~L~~ 104 (570)
T 2z63_A 28 FSTKNLDLSFNPLRHL-GSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSL--ALGAFSGLSSLQK 104 (570)
T ss_dssp SSCCEEECCSCCCCEE-CTTTTTTCSSCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEE--CTTTTTTCTTCCE
T ss_pred ccccEEEccCCccCcc-ChhHhhCCCCceEEECCCCcCCccCcccccCchhCCEEeCcCCcCCcc--CHhhhcCcccccc
Confidence 5799999999999965 566889999999999999999977778899999999999999875432 3345899999999
Q ss_pred EEcCCCCCCCCcccchHhhhcCCCCCEEEcCCCCCCCCCCCCCcCCCCCccEEEccCCCCCCCcchhhhcCCCC----CE
Q 037325 193 FNLGGADLSKAGAYWLEVFNKLHSFVELHLPNCNLPSLPLSFPSLNFASLQVLDLSNNDFNSTTPHWLFNITSL----LC 268 (598)
Q Consensus 193 L~l~~n~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L----~~ 268 (598)
|++++|.+.... ...+..+++|++|++++|.+++......+.++++|++|++++|++++..+..+..+++| +.
T Consensus 105 L~L~~n~l~~l~---~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~~~~~ 181 (570)
T 2z63_A 105 LVAVETNLASLE---NFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLS 181 (570)
T ss_dssp EECTTSCCCCST---TCSCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECTTSCCCEECGGGGHHHHTCTTCCCE
T ss_pred ccccccccccCC---CccccccccccEEecCCCccceecChhhhcccCCCCEEeCcCCccceecHHHccchhccchhhhh
Confidence 999999998875 33588999999999999999986433678889999999999999998888888888888 89
Q ss_pred EEccCCcccccCCccccCCCCccEEECcCCCcCccccchhhcCCCCCCEE------------------------------
Q 037325 269 LDLGSNDLQGDIPDGFASLNSLQELDLSGNSFLGGQLSRNLGKLCNLRTM------------------------------ 318 (598)
Q Consensus 269 L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~l~~l~~L~~L------------------------------ 318 (598)
+++++|.+.+..+..+... +|+.|++++|......++..+..+++++.+
T Consensus 182 L~l~~n~l~~~~~~~~~~~-~L~~L~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~ 260 (570)
T 2z63_A 182 LDLSLNPMNFIQPGAFKEI-RLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIE 260 (570)
T ss_dssp EECTTCCCCEECTTTTTTC-EEEEEEEESCCSCTTHHHHHHHTTTTCEEEEEEEEECCCCSSCEECCTTTTGGGGGSEEE
T ss_pred cccCCCCceecCHHHhccC-cceeEecccccccccchhhhhcCccccceeeeccccccCchhhhhcchhhhccccccchh
Confidence 9999999997777777655 899999999863333444555555554443
Q ss_pred --ecccc-cCCcccchhhhCCCCCCCCCCccEEEccCccccccCccccCCCCCCCEEEccCCcCCccchhhccCCCCCCE
Q 037325 319 --ILSRN-NISSEVSDFLDGLSECTNSILLEKLELRFNQFTGILPISLGSLKNLRHLVLWQNSFLGSIPPSIGNLTLLKE 395 (598)
Q Consensus 319 --~l~~n-~l~~~~~~~~~~l~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~ls~n~l~~~~~~~l~~l~~L~~ 395 (598)
++.++ .+.+..+..+..++ +|++|++++|.+. .+|..+..+ +|+.|++++|.+. .+|. ..+++|++
T Consensus 261 ~l~l~~~~~~~~~~~~~~~~l~------~L~~L~l~~~~l~-~l~~~~~~~-~L~~L~l~~n~~~-~l~~--~~l~~L~~ 329 (570)
T 2z63_A 261 EFRLAYLDYYLDDIIDLFNCLT------NVSSFSLVSVTIE-RVKDFSYNF-GWQHLELVNCKFG-QFPT--LKLKSLKR 329 (570)
T ss_dssp EEEEEETTEEESCSTTTTGGGT------TCSEEEEESCEEC-SCCBCCSCC-CCSEEEEESCBCS-SCCB--CBCSSCCE
T ss_pred hhhhhcchhhhhhchhhhcCcC------cccEEEecCccch-hhhhhhccC-CccEEeeccCccc-ccCc--ccccccCE
Confidence 33333 34444555555555 8999999999998 578788888 9999999999988 5554 57889999
Q ss_pred EeCcCCcCCcccCCCchhhhcCCCCCCEEEccCccCcccc--chHHHhcCCCCCEEEccCCcCcccCCCCcccC-CCCEE
Q 037325 396 LYLASNQMNGQKISDSYQHLKNQTELRTLVLNKARISDTI--SDWFWQLSLTLDELDVAYNELRGRVPNSLGFN-FPAKV 472 (598)
Q Consensus 396 L~l~~n~l~~~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~--~~~~~~~~~~L~~L~ls~n~~~~~~p~~~~~~-~L~~l 472 (598)
|++++|.+.+.. + ...+++|+.|++++|++++.. +..+.. +++|++|++++|.+.+..+. +... .|+.+
T Consensus 330 L~l~~n~~~~~~-~-----~~~~~~L~~L~l~~n~l~~~~~~~~~~~~-~~~L~~L~l~~n~l~~~~~~-~~~l~~L~~L 401 (570)
T 2z63_A 330 LTFTSNKGGNAF-S-----EVDLPSLEFLDLSRNGLSFKGCCSQSDFG-TTSLKYLDLSFNGVITMSSN-FLGLEQLEHL 401 (570)
T ss_dssp EEEESCBSCCBC-C-----CCBCTTCCEEECCSSCCBEEEEEEHHHHT-CSCCCEEECCSCSEEEEEEE-EETCTTCCEE
T ss_pred EeCcCCcccccc-c-----cccCCCCCEEeCcCCccCccccccccccc-cCccCEEECCCCcccccccc-ccccCCCCEE
Confidence 999999887654 3 267899999999999998765 566655 88999999999999876555 5554 99999
Q ss_pred EcccCcCcccCC----CCCcCCcEEEccCCcccccCCchhhcccCCCCCccccCCCCeEeCcCCccc-cccchhccCCCC
Q 037325 473 DLSFNNFEGRLL----LWSFNVTKLYLRDNSFSGLIPNDIGQNLPFLTDLGNLKQLITLVISNNNLS-GEIPLLFSNISF 547 (598)
Q Consensus 473 ~ls~n~l~~~~~----~~~~~L~~L~ls~n~l~~~~p~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~~~p~~~~~l~~ 547 (598)
++++|.+.+..+ ..+++|++|++++|++++..|..+.. +++|+.|++++|.++ +.+|..+..+++
T Consensus 402 ~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~----------l~~L~~L~l~~n~l~~~~~p~~~~~l~~ 471 (570)
T 2z63_A 402 DFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNG----------LSSLEVLKMAGNSFQENFLPDIFTELRN 471 (570)
T ss_dssp ECTTSEEESCTTSCTTTTCTTCCEEECTTSCCEECCTTTTTT----------CTTCCEEECTTCEEGGGEECSCCTTCTT
T ss_pred EccCCccccccchhhhhcCCCCCEEeCcCCcccccchhhhhc----------CCcCcEEECcCCcCccccchhhhhcccC
Confidence 999999987655 23689999999999999888887776 899999999999998 679999999999
Q ss_pred CCEEECCCCcCccccchhccCCCCCCEEEccCCCCcccCCcCccCcCCCC
Q 037325 548 LYILDMSNNSLSGSTPESIGSLRTVKFLVLRNNYLSGKLPLSLKNCTFQE 597 (598)
Q Consensus 548 L~~L~ls~N~l~~~~p~~l~~l~~L~~L~l~~n~l~g~~P~~~~~~~~L~ 597 (598)
|++|++++|++++..|..+.++++|++|++++|++++..|..+..+++|+
T Consensus 472 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~ 521 (570)
T 2z63_A 472 LTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQ 521 (570)
T ss_dssp CCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCC
T ss_pred CCEEECCCCccccCChhhhhcccCCCEEeCCCCcCCCCCHHHhhcccCCc
Confidence 99999999999988899999999999999999999988888899888876
|
| >2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.2e-45 Score=391.76 Aligned_cols=447 Identities=17% Similarity=0.147 Sum_probs=365.6
Q ss_pred CCcceecCccccCCCCCCEEeCCCCCCCCCCcchhccCCCCCCEEECcCCCCCcccchhccCCCCCCEEEccCCCCCCCc
Q 037325 99 HELGGEISPSLLQLKDLEYLDLSMNNFTGFQVPEFIGSLKELRYLNLSGSFFSGTIPQTLGNLSNLLYLDLNNFLDQSNQ 178 (598)
Q Consensus 99 ~~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~~~~~~ 178 (598)
++++ .+|..+. ++|++|++++|.+++. .|..+.++++|++|++++|++++..|..|+++++|++|++++|.+...+
T Consensus 10 n~l~-~ip~~~~--~~L~~L~Ls~n~i~~~-~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~lp 85 (520)
T 2z7x_B 10 NGLI-HVPKDLS--QKTTILNISQNYISEL-WTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNKLVKIS 85 (520)
T ss_dssp SCCS-SCCCSCC--TTCSEEECCSSCCCCC-CHHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSSCCCEEE
T ss_pred CCcc-ccccccc--ccccEEECCCCccccc-ChhhccccccccEEecCCCccCCcChHHhhcccCCCEEecCCCceeecC
Confidence 6777 4676665 8999999999999975 6788999999999999999999888999999999999999999876332
Q ss_pred cChhhhcCCCCCcEEEcCCCCCCCCcccchHhhhcCCCCCEEEcCCCCCCCCCCCCCcCCCCCc--cEEEccCCCC--CC
Q 037325 179 IDLEWLSGLSSLVYFNLGGADLSKAGAYWLEVFNKLHSFVELHLPNCNLPSLPLSFPSLNFASL--QVLDLSNNDF--NS 254 (598)
Q Consensus 179 ~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~L--~~L~L~~n~l--~~ 254 (598)
. . .+++|++|++++|.+.+... +..+..+++|++|++++|.+++. .+..+++| ++|++++|.+ .+
T Consensus 86 ~----~-~l~~L~~L~L~~N~l~~~~~--p~~~~~l~~L~~L~L~~n~l~~~----~~~~l~~L~L~~L~l~~n~l~~~~ 154 (520)
T 2z7x_B 86 C----H-PTVNLKHLDLSFNAFDALPI--CKEFGNMSQLKFLGLSTTHLEKS----SVLPIAHLNISKVLLVLGETYGEK 154 (520)
T ss_dssp C----C-CCCCCSEEECCSSCCSSCCC--CGGGGGCTTCCEEEEEESSCCGG----GGGGGTTSCEEEEEEEECTTTTSS
T ss_pred c----c-ccCCccEEeccCCccccccc--hhhhccCCcceEEEecCcccchh----hccccccceeeEEEeecccccccc
Confidence 2 1 79999999999999987421 57899999999999999998873 34566777 9999999999 77
Q ss_pred CcchhhhcCC-CCCEEEccCCcccccCCc-cccCCCCccEEECcCCCc------CccccchhhcCCCCCCEEecccccCC
Q 037325 255 TTPHWLFNIT-SLLCLDLGSNDLQGDIPD-GFASLNSLQELDLSGNSF------LGGQLSRNLGKLCNLRTMILSRNNIS 326 (598)
Q Consensus 255 ~~~~~l~~l~-~L~~L~l~~n~l~~~~~~-~l~~l~~L~~L~l~~n~~------~~~~~~~~l~~l~~L~~L~l~~n~l~ 326 (598)
..|..+..+. +...+++++|.+.+.++. .+..+++|+.+++++|.. ..+.++ .+..+++|+.|++++|.+.
T Consensus 155 ~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~-~l~~l~~L~~L~l~~~~l~ 233 (520)
T 2z7x_B 155 EDPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILA-KLQTNPKLSNLTLNNIETT 233 (520)
T ss_dssp CCTTTTTTCCEEEEEEECCSSSCCCCCCCCCCTTCSEEEECCEEECCSTTTTHHHHHHHH-GGGGCTTCCEEEEEEEEEE
T ss_pred cccccccccccceEEEEeccCcchhhhhhhhhhcccceeeccccccccccccceeecchh-hhccccchhhccccccccC
Confidence 8888777765 344678888888776654 567899999999999850 123333 6788999999999999887
Q ss_pred cccchhhhCCCCCCCCCCccEEEccCccccccCcccc-----CCCCCCCEEEccCCcCCccch-hhccCC---CCCCEEe
Q 037325 327 SEVSDFLDGLSECTNSILLEKLELRFNQFTGILPISL-----GSLKNLRHLVLWQNSFLGSIP-PSIGNL---TLLKELY 397 (598)
Q Consensus 327 ~~~~~~~~~l~~~~~~~~L~~L~Ls~n~l~~~~~~~l-----~~l~~L~~L~ls~n~l~~~~~-~~l~~l---~~L~~L~ 397 (598)
+..+..+.... ..++|++|++++|.+++.+|..+ +.+++|+.+++++|.+ .+| ..+..+ .+|+.|+
T Consensus 234 ~~~~~~~~~~~---~~~~L~~L~l~~n~l~~~~p~~~~~~~~~~l~~L~~l~l~~n~~--~~p~~~~~~~~~~~~L~~L~ 308 (520)
T 2z7x_B 234 WNSFIRILQLV---WHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVF--GFPQSYIYEIFSNMNIKNFT 308 (520)
T ss_dssp HHHHHHHHHHH---HTSSCSEEEEEEEEEESCCCCCCCCCCSCCCCEEEEEEEEECCC--CSCTHHHHHHHHTCCCSEEE
T ss_pred HHHHHHHHHHh---hhCcccEEEeecccccCccccchhhcccccCceeEeccccccce--ecchhhhhcccccCceeEEE
Confidence 65443322110 01179999999999998899888 8899999999999988 455 444444 6899999
Q ss_pred CcCCcCCcccCCCchhhhcCCCCCCEEEccCccCccccchHHHhcCCCCCEEEccCCcCcc--cCCCCcccC-CCCEEEc
Q 037325 398 LASNQMNGQKISDSYQHLKNQTELRTLVLNKARISDTISDWFWQLSLTLDELDVAYNELRG--RVPNSLGFN-FPAKVDL 474 (598)
Q Consensus 398 l~~n~l~~~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~ls~n~~~~--~~p~~~~~~-~L~~l~l 474 (598)
+++|.+..... ...+++|++|++++|++++..|..+.. +++|++|++++|++++ .+|..+... .|+.|++
T Consensus 309 l~~n~l~~~~~------~~~l~~L~~L~Ls~n~l~~~~~~~~~~-l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~L 381 (520)
T 2z7x_B 309 VSGTRMVHMLC------PSKISPFLHLDFSNNLLTDTVFENCGH-LTELETLILQMNQLKELSKIAEMTTQMKSLQQLDI 381 (520)
T ss_dssp EESSCCCCCCC------CSSCCCCCEEECCSSCCCTTTTTTCCC-CSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEEC
T ss_pred cCCCccccccc------hhhCCcccEEEeECCccChhhhhhhcc-CCCCCEEEccCCccCccccchHHHhhCCCCCEEEC
Confidence 99999875431 257889999999999999988877655 7899999999999986 455556555 8999999
Q ss_pred ccCcCcccCCC----CCcCCcEEEccCCcccccCCchhhcccCCCCCccccCCCCeEeCcCCccccccchhccCCCCCCE
Q 037325 475 SFNNFEGRLLL----WSFNVTKLYLRDNSFSGLIPNDIGQNLPFLTDLGNLKQLITLVISNNNLSGEIPLLFSNISFLYI 550 (598)
Q Consensus 475 s~n~l~~~~~~----~~~~L~~L~ls~n~l~~~~p~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~ 550 (598)
++|++.+.+|. .+++|++|++++|++++.+|..+ .++|+.|++++|+++ .+|..+.++++|++
T Consensus 382 s~N~l~~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l------------~~~L~~L~Ls~N~l~-~ip~~~~~l~~L~~ 448 (520)
T 2z7x_B 382 SQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRCL------------PPRIKVLDLHSNKIK-SIPKQVVKLEALQE 448 (520)
T ss_dssp CSSCCBCCGGGCSCCCCTTCCEEECCSSCCCGGGGGSC------------CTTCCEEECCSSCCC-CCCGGGGGCTTCCE
T ss_pred CCCcCCcccccchhccCccCCEEECcCCCCCcchhhhh------------cccCCEEECCCCccc-ccchhhhcCCCCCE
Confidence 99999986664 35899999999999998777654 268999999999999 89998889999999
Q ss_pred EECCCCcCccccchh-ccCCCCCCEEEccCCCCcccCC
Q 037325 551 LDMSNNSLSGSTPES-IGSLRTVKFLVLRNNYLSGKLP 587 (598)
Q Consensus 551 L~ls~N~l~~~~p~~-l~~l~~L~~L~l~~n~l~g~~P 587 (598)
|++++|+++ .+|.. +..+++|++|++++|++++..|
T Consensus 449 L~L~~N~l~-~l~~~~~~~l~~L~~L~l~~N~~~c~c~ 485 (520)
T 2z7x_B 449 LNVASNQLK-SVPDGIFDRLTSLQKIWLHTNPWDCSCP 485 (520)
T ss_dssp EECCSSCCC-CCCTTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred EECCCCcCC-ccCHHHhccCCcccEEECcCCCCcccCC
Confidence 999999999 57765 8999999999999999987544
|
| >2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.2e-43 Score=376.40 Aligned_cols=440 Identities=18% Similarity=0.160 Sum_probs=363.2
Q ss_pred CEEeCCCCCCCCCCcchhccCCCCCCEEECcCCCCCcccchhccCCCCCCEEEccCCCCCCCccChhhhcCCCCCcEEEc
Q 037325 116 EYLDLSMNNFTGFQVPEFIGSLKELRYLNLSGSFFSGTIPQTLGNLSNLLYLDLNNFLDQSNQIDLEWLSGLSSLVYFNL 195 (598)
Q Consensus 116 ~~L~Ls~n~l~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~~l~~L~~L~l 195 (598)
++|++++|+++ .+|..+. ++|++|++++|.+++..|..|.++++|++|++++|.+... ....+.++++|++|++
T Consensus 3 ~~l~ls~n~l~--~ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~--~~~~~~~l~~L~~L~L 76 (520)
T 2z7x_B 3 FLVDRSKNGLI--HVPKDLS--QKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYL--DISVFKFNQELEYLDL 76 (520)
T ss_dssp CEEECTTSCCS--SCCCSCC--TTCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSSCCCEE--EGGGGTTCTTCCEEEC
T ss_pred ceEecCCCCcc--ccccccc--ccccEEECCCCcccccChhhccccccccEEecCCCccCCc--ChHHhhcccCCCEEec
Confidence 57999999999 5787665 8999999999999988888999999999999999876533 3356899999999999
Q ss_pred CCCCCCCCcccchHhhhcCCCCCEEEcCCCCCCCCCCCCCcCCCCCccEEEccCCCCCCCcchhhhcCCCC--CEEEccC
Q 037325 196 GGADLSKAGAYWLEVFNKLHSFVELHLPNCNLPSLPLSFPSLNFASLQVLDLSNNDFNSTTPHWLFNITSL--LCLDLGS 273 (598)
Q Consensus 196 ~~n~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L--~~L~l~~ 273 (598)
++|.+.... .. .+++|++|++++|.+++.+....+..+++|++|++++|++++ ..+..+++| +.|++++
T Consensus 77 s~N~l~~lp----~~--~l~~L~~L~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~~---~~~~~l~~L~L~~L~l~~ 147 (520)
T 2z7x_B 77 SHNKLVKIS----CH--PTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEK---SSVLPIAHLNISKVLLVL 147 (520)
T ss_dssp CSSCCCEEE----CC--CCCCCSEEECCSSCCSSCCCCGGGGGCTTCCEEEEEESSCCG---GGGGGGTTSCEEEEEEEE
T ss_pred CCCceeecC----cc--ccCCccEEeccCCccccccchhhhccCCcceEEEecCcccch---hhccccccceeeEEEeec
Confidence 999998653 33 899999999999999986544678899999999999999986 346677778 9999999
Q ss_pred Ccc--cccCCccccCCC-CccEEECcCCCcCccccchhhcCCCCCCEEeccccc-------CCcccchhhhCCCCCCCCC
Q 037325 274 NDL--QGDIPDGFASLN-SLQELDLSGNSFLGGQLSRNLGKLCNLRTMILSRNN-------ISSEVSDFLDGLSECTNSI 343 (598)
Q Consensus 274 n~l--~~~~~~~l~~l~-~L~~L~l~~n~~~~~~~~~~l~~l~~L~~L~l~~n~-------l~~~~~~~~~~l~~~~~~~ 343 (598)
|.+ .+..|..+..+. +...+++++|.+.....+..+..+++|+.+++++|. +.+..+ .+..++
T Consensus 148 n~l~~~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~-~l~~l~------ 220 (520)
T 2z7x_B 148 GETYGEKEDPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILA-KLQTNP------ 220 (520)
T ss_dssp CTTTTSSCCTTTTTTCCEEEEEEECCSSSCCCCCCCCCCTTCSEEEECCEEECCSTTTTHHHHHHHH-GGGGCT------
T ss_pred ccccccccccccccccccceEEEEeccCcchhhhhhhhhhcccceeeccccccccccccceeecchh-hhcccc------
Confidence 999 777787777665 345678888885554555677889999999999987 554444 455555
Q ss_pred CccEEEccCccccccCccccC---CCCCCCEEEccCCcCCccchhhc-----cCCCCCCEEeCcCCcCCcccCC-Cchhh
Q 037325 344 LLEKLELRFNQFTGILPISLG---SLKNLRHLVLWQNSFLGSIPPSI-----GNLTLLKELYLASNQMNGQKIS-DSYQH 414 (598)
Q Consensus 344 ~L~~L~Ls~n~l~~~~~~~l~---~l~~L~~L~ls~n~l~~~~~~~l-----~~l~~L~~L~l~~n~l~~~~~~-~~~~~ 414 (598)
+|+.|++++|.+.+..+..+. ..++|++|++++|++.+.+|..+ ..+++|+.+++++|.+ .. | ..+..
T Consensus 221 ~L~~L~l~~~~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~~l~~L~~l~l~~n~~--~~-p~~~~~~ 297 (520)
T 2z7x_B 221 KLSNLTLNNIETTWNSFIRILQLVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVF--GF-PQSYIYE 297 (520)
T ss_dssp TCCEEEEEEEEEEHHHHHHHHHHHHTSSCSEEEEEEEEEESCCCCCCCCCCSCCCCEEEEEEEEECCC--CS-CTHHHHH
T ss_pred chhhccccccccCHHHHHHHHHHhhhCcccEEEeecccccCccccchhhcccccCceeEeccccccce--ec-chhhhhc
Confidence 899999999988754332221 24699999999999999999888 8999999999999998 23 4 33333
Q ss_pred hcCCCCCCEEEccCccCccccchHHHhcCCCCCEEEccCCcCcccCCCCcccC-CCCEEEcccCcCcc--cCC---CCCc
Q 037325 415 LKNQTELRTLVLNKARISDTISDWFWQLSLTLDELDVAYNELRGRVPNSLGFN-FPAKVDLSFNNFEG--RLL---LWSF 488 (598)
Q Consensus 415 l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~ls~n~~~~~~p~~~~~~-~L~~l~ls~n~l~~--~~~---~~~~ 488 (598)
+....+|+.|++++|.+...... ..+++|++|++++|++++.+|..+... .|+.|++++|++.+ .+| ..++
T Consensus 298 ~~~~~~L~~L~l~~n~l~~~~~~---~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~ 374 (520)
T 2z7x_B 298 IFSNMNIKNFTVSGTRMVHMLCP---SKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMK 374 (520)
T ss_dssp HHHTCCCSEEEEESSCCCCCCCC---SSCCCCCEEECCSSCCCTTTTTTCCCCSSCCEEECCSSCCCBHHHHHHHHTTCT
T ss_pred ccccCceeEEEcCCCccccccch---hhCCcccEEEeECCccChhhhhhhccCCCCCEEEccCCccCccccchHHHhhCC
Confidence 33446899999999998764421 247899999999999999889888776 99999999999997 444 3478
Q ss_pred CCcEEEccCCcccccCCch-hhcccCCCCCccccCCCCeEeCcCCccccccchhccCCCCCCEEECCCCcCccccchhcc
Q 037325 489 NVTKLYLRDNSFSGLIPND-IGQNLPFLTDLGNLKQLITLVISNNNLSGEIPLLFSNISFLYILDMSNNSLSGSTPESIG 567 (598)
Q Consensus 489 ~L~~L~ls~n~l~~~~p~~-~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~l~ 567 (598)
+|++|++++|++++.+|.. +.. +++|+.|++++|.+++.+|..+. ++|++|++++|+++ .+|..+.
T Consensus 375 ~L~~L~Ls~N~l~~~l~~~~~~~----------l~~L~~L~Ls~N~l~~~~~~~l~--~~L~~L~Ls~N~l~-~ip~~~~ 441 (520)
T 2z7x_B 375 SLQQLDISQNSVSYDEKKGDCSW----------TKSLLSLNMSSNILTDTIFRCLP--PRIKVLDLHSNKIK-SIPKQVV 441 (520)
T ss_dssp TCCEEECCSSCCBCCGGGCSCCC----------CTTCCEEECCSSCCCGGGGGSCC--TTCCEEECCSSCCC-CCCGGGG
T ss_pred CCCEEECCCCcCCcccccchhcc----------CccCCEEECcCCCCCcchhhhhc--ccCCEEECCCCccc-ccchhhh
Confidence 9999999999999867765 333 79999999999999988988775 89999999999999 8999888
Q ss_pred CCCCCCEEEccCCCCcccCCcC-ccCcCCCC
Q 037325 568 SLRTVKFLVLRNNYLSGKLPLS-LKNCTFQE 597 (598)
Q Consensus 568 ~l~~L~~L~l~~n~l~g~~P~~-~~~~~~L~ 597 (598)
.+++|++|++++|+++ .+|.. +..+++|+
T Consensus 442 ~l~~L~~L~L~~N~l~-~l~~~~~~~l~~L~ 471 (520)
T 2z7x_B 442 KLEALQELNVASNQLK-SVPDGIFDRLTSLQ 471 (520)
T ss_dssp GCTTCCEEECCSSCCC-CCCTTTTTTCTTCC
T ss_pred cCCCCCEEECCCCcCC-ccCHHHhccCCccc
Confidence 9999999999999999 68876 88887775
|
| >2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.6e-42 Score=372.35 Aligned_cols=462 Identities=18% Similarity=0.155 Sum_probs=363.6
Q ss_pred CCcceecCccccCCCCCCEEeCCCCCCCCCCcchhccCCCCCCEEECcCCCCCcccchhccCCCCCCEEEccCCCCCCCc
Q 037325 99 HELGGEISPSLLQLKDLEYLDLSMNNFTGFQVPEFIGSLKELRYLNLSGSFFSGTIPQTLGNLSNLLYLDLNNFLDQSNQ 178 (598)
Q Consensus 99 ~~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~~~~~~ 178 (598)
++++ .+|..+. ++|++|++++|++++. .|..+.++++|++|++++|++++..|..|+.+++|++|++++|.+...
T Consensus 15 ~~l~-~ip~~~~--~~L~~L~Ls~n~l~~~-~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~- 89 (549)
T 2z81_A 15 RSFT-SIPSGLT--AAMKSLDLSFNKITYI-GHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSL- 89 (549)
T ss_dssp SCCS-SCCSCCC--TTCCEEECCSSCCCEE-CSSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCSC-
T ss_pred Cccc-cccccCC--CCccEEECcCCccCcc-ChhhhhcCCcccEEECCCCCcCccChhhccccccCCEEECCCCccCcc-
Confidence 4554 4555553 7999999999999865 677899999999999999999987788899999999999999876543
Q ss_pred cChhhhcCCCCCcEEEcCCCCCCCCcccchHhhhcCCCCCEEEcCCCC-CCCCCCCCCcCCCCCccEEEccCCCCCCCcc
Q 037325 179 IDLEWLSGLSSLVYFNLGGADLSKAGAYWLEVFNKLHSFVELHLPNCN-LPSLPLSFPSLNFASLQVLDLSNNDFNSTTP 257 (598)
Q Consensus 179 ~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~l~~L~~L~l~~~~-l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~ 257 (598)
....+.++++|++|++++|.+..... +..+.++++|++|++++|. +..++. ..+..+++|++|++++|.+++..|
T Consensus 90 -~~~~~~~l~~L~~L~Ls~n~l~~~~~--~~~~~~l~~L~~L~L~~n~~~~~~~~-~~~~~l~~L~~L~L~~n~l~~~~~ 165 (549)
T 2z81_A 90 -SSSWFGPLSSLKYLNLMGNPYQTLGV--TSLFPNLTNLQTLRIGNVETFSEIRR-IDFAGLTSLNELEIKALSLRNYQS 165 (549)
T ss_dssp -CHHHHTTCTTCCEEECTTCCCSSSCS--SCSCTTCTTCCEEEEEESSSCCEECT-TTTTTCCEEEEEEEEETTCCEECT
T ss_pred -CHHHhccCCCCcEEECCCCcccccch--hhhhhccCCccEEECCCCccccccCH-hhhhcccccCeeeccCCcccccCh
Confidence 33458899999999999999986431 4578899999999999998 455444 567889999999999999999899
Q ss_pred hhhhcCCCCCEEEccCCcccccCCcc-ccCCCCccEEECcCCCcCcccc--c-hhhcCCCCCCEEecccccCCcccchhh
Q 037325 258 HWLFNITSLLCLDLGSNDLQGDIPDG-FASLNSLQELDLSGNSFLGGQL--S-RNLGKLCNLRTMILSRNNISSEVSDFL 333 (598)
Q Consensus 258 ~~l~~l~~L~~L~l~~n~l~~~~~~~-l~~l~~L~~L~l~~n~~~~~~~--~-~~l~~l~~L~~L~l~~n~l~~~~~~~~ 333 (598)
..+..+++|++|+++.|.+. .+|.. +..+++|++|++++|.+ .+.. + .....+++|+.|++++|.+.+..+..+
T Consensus 166 ~~l~~l~~L~~L~l~~n~~~-~~~~~~~~~l~~L~~L~L~~n~l-~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l 243 (549)
T 2z81_A 166 QSLKSIRDIHHLTLHLSESA-FLLEIFADILSSVRYLELRDTNL-ARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNEL 243 (549)
T ss_dssp TTTTTCSEEEEEEEECSBST-THHHHHHHSTTTBSEEEEESCBC-TTCCCCCCSSCCCCCCCCEEEEESCEEEHHHHHHH
T ss_pred hhhhccccCceEecccCccc-ccchhhHhhcccccEEEccCCcc-ccccccccchhhhhhcccceeccccccchhHHHHH
Confidence 99999999999999999876 34443 35689999999999984 3321 1 223457899999999999887665544
Q ss_pred hCCCCCCCCCCccEEEccCccccccC------ccccCCCCCCCEEEccCCcCCcc-----chhhccCCCCCCEEeCcCCc
Q 037325 334 DGLSECTNSILLEKLELRFNQFTGIL------PISLGSLKNLRHLVLWQNSFLGS-----IPPSIGNLTLLKELYLASNQ 402 (598)
Q Consensus 334 ~~l~~~~~~~~L~~L~Ls~n~l~~~~------~~~l~~l~~L~~L~ls~n~l~~~-----~~~~l~~l~~L~~L~l~~n~ 402 (598)
.... ..+.+|+.+++++|.+.+.. ...+..+++|+.|++.++.+... ++..+...++|++|++++|.
T Consensus 244 ~~~~--~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~l~~~~~~~~~L~~L~l~~n~ 321 (549)
T 2z81_A 244 LKLL--RYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSK 321 (549)
T ss_dssp HGGG--GGCTTCCEEEEESCEEECCSCCCCCTTTCCCCCTTCCEEEEESCBCSCGGGSCCCCHHHHHSTTCCEEEEESSC
T ss_pred HHHh--hhhccccccccccccccccccccccchhhhhhhcccccccccccccchhhhcccchhhhhhcccceEEEeccCc
Confidence 3221 11227999999999887532 12346778999999999877542 22223445789999999999
Q ss_pred CCcccCCCchhhhcCCCCCCEEEccCccCccccchHH--HhcCCCCCEEEccCCcCcccCC--CCcccC-CCCEEEcccC
Q 037325 403 MNGQKISDSYQHLKNQTELRTLVLNKARISDTISDWF--WQLSLTLDELDVAYNELRGRVP--NSLGFN-FPAKVDLSFN 477 (598)
Q Consensus 403 l~~~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~--~~~~~~L~~L~ls~n~~~~~~p--~~~~~~-~L~~l~ls~n 477 (598)
+... |.. .+..+++|++|++++|++++..|... ...+++|++|++++|++++..+ ..+... .|+.|++++|
T Consensus 322 l~~i--p~~--~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~l~~L~~L~Ls~N 397 (549)
T 2z81_A 322 VFLV--PCS--FSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRN 397 (549)
T ss_dssp CCCC--CHH--HHHHCTTCCEEECCSSCCCHHHHHHHTCTTSSTTCCEEECTTSCCCCHHHHHHHGGGCTTCCEEECTTC
T ss_pred cccC--CHH--HHhcCccccEEEccCCccccccccchhhhhccccCcEEEccCCcccccccchhhhhcCCCCCEEECCCC
Confidence 8743 422 23578999999999999998765432 2347899999999999986432 234444 8999999999
Q ss_pred cCcccCCCC---CcCCcEEEccCCcccccCCchhhcccCCCCCccccCCCCeEeCcCCccccccchhccCCCCCCEEECC
Q 037325 478 NFEGRLLLW---SFNVTKLYLRDNSFSGLIPNDIGQNLPFLTDLGNLKQLITLVISNNNLSGEIPLLFSNISFLYILDMS 554 (598)
Q Consensus 478 ~l~~~~~~~---~~~L~~L~ls~n~l~~~~p~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ls 554 (598)
+++ .+|.. +++|++|++++|+++ .+|..+ .++|++|++++|++++.+ +++++|++|+++
T Consensus 398 ~l~-~lp~~~~~~~~L~~L~Ls~N~l~-~l~~~~------------~~~L~~L~Ls~N~l~~~~----~~l~~L~~L~Ls 459 (549)
T 2z81_A 398 TFH-PMPDSCQWPEKMRFLNLSSTGIR-VVKTCI------------PQTLEVLDVSNNNLDSFS----LFLPRLQELYIS 459 (549)
T ss_dssp CCC-CCCSCCCCCTTCCEEECTTSCCS-CCCTTS------------CTTCSEEECCSSCCSCCC----CCCTTCCEEECC
T ss_pred CCc-cCChhhcccccccEEECCCCCcc-cccchh------------cCCceEEECCCCChhhhc----ccCChhcEEECC
Confidence 998 45553 578999999999998 455443 368999999999999643 578999999999
Q ss_pred CCcCccccchhccCCCCCCEEEccCCCCcccCCcCccCcCCCC
Q 037325 555 NNSLSGSTPESIGSLRTVKFLVLRNNYLSGKLPLSLKNCTFQE 597 (598)
Q Consensus 555 ~N~l~~~~p~~l~~l~~L~~L~l~~n~l~g~~P~~~~~~~~L~ 597 (598)
+|+++ .+|. ...+++|++|++++|++++.+|..+..+++|+
T Consensus 460 ~N~l~-~ip~-~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~ 500 (549)
T 2z81_A 460 RNKLK-TLPD-ASLFPVLLVMKISRNQLKSVPDGIFDRLTSLQ 500 (549)
T ss_dssp SSCCS-SCCC-GGGCTTCCEEECCSSCCCCCCTTGGGGCTTCC
T ss_pred CCccC-cCCC-cccCccCCEEecCCCccCCcCHHHHhcCcccC
Confidence 99999 7887 57899999999999999998888899888875
|
| >4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} | Back alignment and structure |
|---|
Probab=100.00 E-value=6.8e-45 Score=395.35 Aligned_cols=435 Identities=19% Similarity=0.226 Sum_probs=339.1
Q ss_pred CCCCEEeCCCCCCCCCCcchhccCCCCCCEEECcCCCCC------c------ccchhccCCCCCCEEEccCCCCCCCccC
Q 037325 113 KDLEYLDLSMNNFTGFQVPEFIGSLKELRYLNLSGSFFS------G------TIPQTLGNLSNLLYLDLNNFLDQSNQID 180 (598)
Q Consensus 113 ~~L~~L~Ls~n~l~~~~~p~~~~~l~~L~~L~L~~n~l~------~------~~p~~l~~l~~L~~L~L~~n~~~~~~~~ 180 (598)
.+++.|+|+++.+.|. +|..++++++|++|+|++|.+. + .+|... +.+|+ ++++++.......
T Consensus 81 ~~V~~L~L~~~~l~g~-lp~~l~~L~~L~~L~Ls~N~~~~~~~~~~~~~~~~~~~~~~--~~~l~-l~l~~~~l~~~~~- 155 (636)
T 4eco_A 81 GRVTGLSLEGFGASGR-VPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQ--KQKMR-MHYQKTFVDYDPR- 155 (636)
T ss_dssp CCEEEEECTTSCCEEE-ECGGGGGCTTCCEEESCCGGGGGTCCSBSTTSBCTTCCHHH--HHHHH-THHHHHHTCCCGG-
T ss_pred CCEEEEEecCcccCCc-CChHHhcCccceEEECcCCccccCCccccccccccCchHHH--HHHHH-hhHHHhhhccCch-
Confidence 4678899999999886 8889999999999999998652 2 233322 23333 4444432221111
Q ss_pred hhhhc-CCCCCcEEEcCCCCCCCCcccchHhhhcCCCCCEEEcC--CCCCCCCCCCCCcCCCCCccEEEccCCCCCCC--
Q 037325 181 LEWLS-GLSSLVYFNLGGADLSKAGAYWLEVFNKLHSFVELHLP--NCNLPSLPLSFPSLNFASLQVLDLSNNDFNST-- 255 (598)
Q Consensus 181 ~~~~~-~l~~L~~L~l~~n~~~~~~~~~~~~~~~l~~L~~L~l~--~~~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~-- 255 (598)
..+. .+..+..+++....+.. .....++.+.+. .|.++++| ..++++++|++|++++|.+++.
T Consensus 156 -~~~~~~~~~l~~~~l~~~~~~~---------~~~~~l~~l~l~~~~n~l~~ip--~~l~~l~~L~~L~Ls~n~l~~~~~ 223 (636)
T 4eco_A 156 -EDFSDLIKDCINSDPQQKSIKK---------SSRITLKDTQIGQLSNNITFVS--KAVMRLTKLRQFYMGNSPFVAENI 223 (636)
T ss_dssp -GGSCHHHHHHHHHCTTSCCCCC---------CCCCCCCTTTTTCCSCEEEEEC--GGGGGCTTCCEEEEESCCCCGGGB
T ss_pred -hhHHHHHHHHhhcCcccccccc---------ccccchhhhhhccccCCCccCC--HHHhcccCCCEEECcCCccccccc
Confidence 0000 00111111111111100 011122222222 45677744 4688999999999999999986
Q ss_pred ---------------cchhhh--cCCCCCEEEccCCcccccCCccccCCCCccEEECcCCCcCcc-ccchhhcCC-----
Q 037325 256 ---------------TPHWLF--NITSLLCLDLGSNDLQGDIPDGFASLNSLQELDLSGNSFLGG-QLSRNLGKL----- 312 (598)
Q Consensus 256 ---------------~~~~l~--~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~-~~~~~l~~l----- 312 (598)
+|..+. ++++|++|++++|.+.+.+|..++++++|++|++++|..+.+ .+|..++.+
T Consensus 224 ~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~ 303 (636)
T 4eco_A 224 CEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPV 303 (636)
T ss_dssp SSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTTCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGG
T ss_pred cccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccChHHHhcCCCCCEEECcCCCCCccccchHHHHhhhcccc
Confidence 888888 999999999999999999999999999999999999983455 788888776
Q ss_pred -CCCCEEecccccCCcccch--hhhCCCCCCCCCCccEEEccCccccccCccccCCCCCCCEEEccCCcCCccchhhccC
Q 037325 313 -CNLRTMILSRNNISSEVSD--FLDGLSECTNSILLEKLELRFNQFTGILPISLGSLKNLRHLVLWQNSFLGSIPPSIGN 389 (598)
Q Consensus 313 -~~L~~L~l~~n~l~~~~~~--~~~~l~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~ls~n~l~~~~~~~l~~ 389 (598)
++|++|++++|+++ .+|. .+..++ +|++|++++|.++|.+| .++.+++|++|++++|++. .+|..+..
T Consensus 304 l~~L~~L~L~~n~l~-~ip~~~~l~~l~------~L~~L~L~~N~l~g~ip-~~~~l~~L~~L~L~~N~l~-~lp~~l~~ 374 (636)
T 4eco_A 304 GEKIQIIYIGYNNLK-TFPVETSLQKMK------KLGMLECLYNQLEGKLP-AFGSEIKLASLNLAYNQIT-EIPANFCG 374 (636)
T ss_dssp GGTCCEEECCSSCCS-SCCCHHHHTTCT------TCCEEECCSCCCEEECC-CCEEEEEESEEECCSSEEE-ECCTTSEE
T ss_pred CCCCCEEECCCCcCC-ccCchhhhccCC------CCCEEeCcCCcCccchh-hhCCCCCCCEEECCCCccc-cccHhhhh
Confidence 99999999999999 6776 788887 89999999999998899 8899999999999999999 88888999
Q ss_pred CCC-CCEEeCcCCcCCcccCCCchhhhcCCCCCCEEEccCccCccccchHHHh------cCCCCCEEEccCCcCcccCCC
Q 037325 390 LTL-LKELYLASNQMNGQKISDSYQHLKNQTELRTLVLNKARISDTISDWFWQ------LSLTLDELDVAYNELRGRVPN 462 (598)
Q Consensus 390 l~~-L~~L~l~~n~l~~~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~------~~~~L~~L~ls~n~~~~~~p~ 462 (598)
+++ |++|++++|.++. + |..+ ....+++|+.|++++|++++..|..+.. .+++|++|++++|+++ .+|.
T Consensus 375 l~~~L~~L~Ls~N~l~~-l-p~~~-~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N~l~-~lp~ 450 (636)
T 4eco_A 375 FTEQVENLSFAHNKLKY-I-PNIF-DAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQIS-KFPK 450 (636)
T ss_dssp ECTTCCEEECCSSCCSS-C-CSCC-CTTCSSCEEEEECCSSCTTTTTTCSSCTTCSSCCCCCCEEEEECCSSCCC-SCCT
T ss_pred hcccCcEEEccCCcCcc-c-chhh-hhcccCccCEEECcCCcCCCcchhhhcccccccccCCCCCEEECcCCccC-cCCH
Confidence 999 9999999999984 3 5432 1123458999999999999988876651 2568999999999999 5665
Q ss_pred Cccc--CCCCEEEcccCcCcccCCCC-Cc----------CCcEEEccCCcccccCCchhh--cccCCCCCccccCCCCeE
Q 037325 463 SLGF--NFPAKVDLSFNNFEGRLLLW-SF----------NVTKLYLRDNSFSGLIPNDIG--QNLPFLTDLGNLKQLITL 527 (598)
Q Consensus 463 ~~~~--~~L~~l~ls~n~l~~~~~~~-~~----------~L~~L~ls~n~l~~~~p~~~~--~~~~~~~~~~~l~~L~~L 527 (598)
.+.. ..|+.|++++|+++ .+|.. +. +|++|++++|+++ .+|..+. . +++|+.|
T Consensus 451 ~~~~~l~~L~~L~Ls~N~l~-~i~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~~~----------l~~L~~L 518 (636)
T 4eco_A 451 ELFSTGSPLSSINLMGNMLT-EIPKNSLKDENENFKNTYLLTSIDLRFNKLT-KLSDDFRATT----------LPYLVGI 518 (636)
T ss_dssp HHHHTTCCCSEEECCSSCCS-BCCSSSSEETTEECTTGGGCCEEECCSSCCC-BCCGGGSTTT----------CTTCCEE
T ss_pred HHHccCCCCCEEECCCCCCC-CcCHHHhccccccccccCCccEEECcCCcCC-ccChhhhhcc----------CCCcCEE
Confidence 5433 38999999999999 55554 22 8999999999999 7888876 5 8999999
Q ss_pred eCcCCccccccchhccCCCCCCEEEC------CCCcCccccchhccCCCCCCEEEccCCCCcccCCcCcc
Q 037325 528 VISNNNLSGEIPLLFSNISFLYILDM------SNNSLSGSTPESIGSLRTVKFLVLRNNYLSGKLPLSLK 591 (598)
Q Consensus 528 ~Ls~N~l~~~~p~~~~~l~~L~~L~l------s~N~l~~~~p~~l~~l~~L~~L~l~~n~l~g~~P~~~~ 591 (598)
+|++|++++ +|..++++++|++|++ ++|++.+.+|..+.++++|++|++++|++ +.+|..+.
T Consensus 519 ~Ls~N~l~~-ip~~~~~l~~L~~L~Ls~N~~ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l-~~ip~~~~ 586 (636)
T 4eco_A 519 DLSYNSFSK-FPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSNDI-RKVNEKIT 586 (636)
T ss_dssp ECCSSCCSS-CCCGGGGCSSCCEEECCSCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCC-CBCCSCCC
T ss_pred ECCCCCCCC-cChhhhcCCCCCEEECCCCcccccCcccccChHHHhcCCCCCEEECCCCcC-CccCHhHh
Confidence 999999997 9999999999999999 56788999999999999999999999999 69998765
|
| >3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.6e-42 Score=372.75 Aligned_cols=455 Identities=19% Similarity=0.138 Sum_probs=357.3
Q ss_pred EEEEcCCCCCCCCCCcccCCCCCcceecCccccCCCCCCEEeCCCCCCCCCCcchhccCCCCCCEEECcCCCCCcccchh
Q 037325 78 IKLNLNNPFRDSFGSFEDDAGHELGGEISPSLLQLKDLEYLDLSMNNFTGFQVPEFIGSLKELRYLNLSGSFFSGTIPQT 157 (598)
Q Consensus 78 ~~L~L~~~~~~~~~~~~~~~~~~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~ 157 (598)
+.+|+++ +++++ +|..+. ++|++|++++|.+++. .|..+.++++|++|++++|++++..|..
T Consensus 34 ~~l~ls~--------------~~L~~-ip~~~~--~~L~~L~Ls~N~i~~~-~~~~~~~l~~L~~L~Ls~N~l~~~~~~~ 95 (562)
T 3a79_B 34 SMVDYSN--------------RNLTH-VPKDLP--PRTKALSLSQNSISEL-RMPDISFLSELRVLRLSHNRIRSLDFHV 95 (562)
T ss_dssp CEEECTT--------------SCCCS-CCTTSC--TTCCEEECCSSCCCCC-CGGGTTTCTTCCEEECCSCCCCEECTTT
T ss_pred cEEEcCC--------------CCCcc-CCCCCC--CCcCEEECCCCCcccc-ChhhhccCCCccEEECCCCCCCcCCHHH
Confidence 6788887 67775 666554 8999999999999975 6678999999999999999999877899
Q ss_pred ccCCCCCCEEEccCCCCCCCccChhhhcCCCCCcEEEcCCCCCCCCcccchHhhhcCCCCCEEEcCCCCCCCCCCCCCcC
Q 037325 158 LGNLSNLLYLDLNNFLDQSNQIDLEWLSGLSSLVYFNLGGADLSKAGAYWLEVFNKLHSFVELHLPNCNLPSLPLSFPSL 237 (598)
Q Consensus 158 l~~l~~L~~L~L~~n~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~ 237 (598)
|.++++|++|++++|.+...+.. .+++|++|++++|.+..... +..+.++++|++|++++|.++... +.
T Consensus 96 ~~~l~~L~~L~Ls~N~l~~lp~~-----~l~~L~~L~Ls~N~l~~l~~--p~~~~~l~~L~~L~L~~n~l~~~~----~~ 164 (562)
T 3a79_B 96 FLFNQDLEYLDVSHNRLQNISCC-----PMASLRHLDLSFNDFDVLPV--CKEFGNLTKLTFLGLSAAKFRQLD----LL 164 (562)
T ss_dssp TTTCTTCCEEECTTSCCCEECSC-----CCTTCSEEECCSSCCSBCCC--CGGGGGCTTCCEEEEECSBCCTTT----TG
T ss_pred hCCCCCCCEEECCCCcCCccCcc-----ccccCCEEECCCCCccccCc--hHhhcccCcccEEecCCCccccCc----hh
Confidence 99999999999999987633321 79999999999999987532 478999999999999999998743 33
Q ss_pred CCCCc--cEEEccCCCC--CCCcchhhhcCC-CCCEEEccCCcccccCCc-cccCCCCccEEECcCCCcCc---cccchh
Q 037325 238 NFASL--QVLDLSNNDF--NSTTPHWLFNIT-SLLCLDLGSNDLQGDIPD-GFASLNSLQELDLSGNSFLG---GQLSRN 308 (598)
Q Consensus 238 ~l~~L--~~L~L~~n~l--~~~~~~~l~~l~-~L~~L~l~~n~l~~~~~~-~l~~l~~L~~L~l~~n~~~~---~~~~~~ 308 (598)
.+++| ++|++++|.+ ++..|..+..+. ..-.+++++|.+.+.++. .+..+++|+.+++++|.... ......
T Consensus 165 ~l~~L~L~~L~L~~n~l~~~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~l~~~~~~ 244 (562)
T 3a79_B 165 PVAHLHLSCILLDLVSYHIKGGETESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSE 244 (562)
T ss_dssp GGTTSCEEEEEEEESSCCCCSSSCCEEEECCEEEEEEEECSSSCCCCCCEEEESSEEEEEEEEEECCSTTHHHHHHHHHH
T ss_pred hhhhceeeEEEeecccccccccCcccccccCcceEEEEecCccchhhhhhhcccccceEEEecccccccccchHHHHHHH
Confidence 44555 9999999999 888888777665 222567888888776654 45678999999999985211 122345
Q ss_pred hcCCCCCCEEecccccCCcccchhhhCCCCCCCCCCccEEEccCccccccCcccc-----CCCCCCCEEEccCCcCCccc
Q 037325 309 LGKLCNLRTMILSRNNISSEVSDFLDGLSECTNSILLEKLELRFNQFTGILPISL-----GSLKNLRHLVLWQNSFLGSI 383 (598)
Q Consensus 309 l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~~~~~~~L~~L~Ls~n~l~~~~~~~l-----~~l~~L~~L~ls~n~l~~~~ 383 (598)
+..+++|+.+++.++.+.+.....+.... ...+|++|++++|.+++.+|..+ ..++.|+.++++.+.+ .+
T Consensus 245 l~~l~~L~~L~L~~~~l~~~~~~~~~~~~---~~~~L~~L~l~~n~l~~~ip~~~~~~~~~~L~~L~~~~~~~~~~--~~ 319 (562)
T 3a79_B 245 LTRGPTLLNVTLQHIETTWKCSVKLFQFF---WPRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVF--LF 319 (562)
T ss_dssp HHSCSSCEEEEEEEEEECHHHHHHHHHHH---TTSSEEEEEEEEEEECSCCCCCCCCCCSCSCCEEEEEEEEECCC--SS
T ss_pred HhccCcceEEEecCCcCcHHHHHHHHHhh---hcccccEEEEeccEeeccccchhhhcccccchheehhhccccee--ec
Confidence 77889999999998887764332211110 01179999999999998888877 6677777777777776 33
Q ss_pred h-hhcc---CCCCCCEEeCcCCcCCcccCCCchhhhcCCCCCCEEEccCccCccccchHHHhcCCCCCEEEccCCcCccc
Q 037325 384 P-PSIG---NLTLLKELYLASNQMNGQKISDSYQHLKNQTELRTLVLNKARISDTISDWFWQLSLTLDELDVAYNELRGR 459 (598)
Q Consensus 384 ~-~~l~---~l~~L~~L~l~~n~l~~~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~ls~n~~~~~ 459 (598)
| ..+. ...+|++|++++|.+..... ...+++|++|++++|++++..|..+.. +++|++|++++|++++.
T Consensus 320 p~~~~~~~~~~~~L~~L~l~~n~~~~~~~------~~~l~~L~~L~l~~n~l~~~~~~~~~~-l~~L~~L~L~~N~l~~~ 392 (562)
T 3a79_B 320 SKEALYSVFAEMNIKMLSISDTPFIHMVC------PPSPSSFTFLNFTQNVFTDSVFQGCST-LKRLQTLILQRNGLKNF 392 (562)
T ss_dssp CHHHHHHHHHTCCCSEEEEESSCCCCCCC------CSSCCCCCEEECCSSCCCTTTTTTCCS-CSSCCEEECCSSCCCBT
T ss_pred ChhhhhhhhccCcceEEEccCCCcccccC------ccCCCCceEEECCCCccccchhhhhcc-cCCCCEEECCCCCcCCc
Confidence 4 2222 23679999999998864431 257889999999999999877777655 78999999999999863
Q ss_pred --CCCCcccC-CCCEEEcccCcCcccCCCC----CcCCcEEEccCCcccccCCchhhcccCCCCCccccCCCCeEeCcCC
Q 037325 460 --VPNSLGFN-FPAKVDLSFNNFEGRLLLW----SFNVTKLYLRDNSFSGLIPNDIGQNLPFLTDLGNLKQLITLVISNN 532 (598)
Q Consensus 460 --~p~~~~~~-~L~~l~ls~n~l~~~~~~~----~~~L~~L~ls~n~l~~~~p~~~~~~~~~~~~~~~l~~L~~L~Ls~N 532 (598)
+|..+... .|+.+++++|++.+.+|.. +++|++|++++|++++.+|..+ .++|+.|+|++|
T Consensus 393 ~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l------------~~~L~~L~L~~N 460 (562)
T 3a79_B 393 FKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTGSVFRCL------------PPKVKVLDLHNN 460 (562)
T ss_dssp THHHHTTTTCTTCCEEECTTSCCBSCCSSCCCCCCTTCCEEECCSSCCCGGGGSSC------------CTTCSEEECCSS
T ss_pred ccchhhhcCCCCCCEEECCCCcCCCccChhhhcCcccCCEEECCCCCCCcchhhhh------------cCcCCEEECCCC
Confidence 34445554 8999999999998866643 5889999999999988776543 158999999999
Q ss_pred ccccccchhccCCCCCCEEECCCCcCccccchh-ccCCCCCCEEEccCCCCcccCC
Q 037325 533 NLSGEIPLLFSNISFLYILDMSNNSLSGSTPES-IGSLRTVKFLVLRNNYLSGKLP 587 (598)
Q Consensus 533 ~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~-l~~l~~L~~L~l~~n~l~g~~P 587 (598)
+++ .+|..+.++++|++|++++|+++ .+|.. +..+++|+.|++++|++.+..|
T Consensus 461 ~l~-~ip~~~~~l~~L~~L~L~~N~l~-~l~~~~~~~l~~L~~L~l~~N~~~c~c~ 514 (562)
T 3a79_B 461 RIM-SIPKDVTHLQALQELNVASNQLK-SVPDGVFDRLTSLQYIWLHDNPWDCTCP 514 (562)
T ss_dssp CCC-CCCTTTTSSCCCSEEECCSSCCC-CCCTTSTTTCTTCCCEECCSCCBCCCHH
T ss_pred cCc-ccChhhcCCCCCCEEECCCCCCC-CCCHHHHhcCCCCCEEEecCCCcCCCcc
Confidence 998 88888889999999999999999 57766 8999999999999999987544
|
| >4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=6e-41 Score=366.90 Aligned_cols=460 Identities=20% Similarity=0.122 Sum_probs=314.6
Q ss_pred CcEEEEEcCCCCCCCCCCcccCCCCCcceecCccccCCCCCCEEeCCCCCCCCCCcchhccCCCCCCEEECcCCCCCccc
Q 037325 75 ASVIKLNLNNPFRDSFGSFEDDAGHELGGEISPSLLQLKDLEYLDLSMNNFTGFQVPEFIGSLKELRYLNLSGSFFSGTI 154 (598)
Q Consensus 75 ~~v~~L~L~~~~~~~~~~~~~~~~~~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~p~~~~~l~~L~~L~L~~n~l~~~~ 154 (598)
..+++|||++ |.+++..+.+|.++++|++|+|++|+++++ .|..|.++++|++|+|++|++++..
T Consensus 52 ~~~~~LdLs~--------------N~i~~l~~~~f~~l~~L~~L~Ls~N~i~~i-~~~~f~~L~~L~~L~Ls~N~l~~l~ 116 (635)
T 4g8a_A 52 FSTKNLDLSF--------------NPLRHLGSYSFFSFPELQVLDLSRCEIQTI-EDGAYQSLSHLSTLILTGNPIQSLA 116 (635)
T ss_dssp TTCCEEECTT--------------SCCCEECTTTTTTCTTCCEEECTTCCCCEE-CTTTTTTCTTCCEEECTTCCCCEEC
T ss_pred cCCCEEEeeC--------------CCCCCCCHHHHhCCCCCCEEECCCCcCCCc-ChhHhcCCCCCCEEEccCCcCCCCC
Confidence 4678888888 788887778899999999999999998854 4567888999999999999988655
Q ss_pred chhccCCCCCCEEEccCCCCCCCccChhhhcCCCCCcEEEcCCCCCCCCcccchHhhhcCCCCCEEEcCCCCCCCCCCCC
Q 037325 155 PQTLGNLSNLLYLDLNNFLDQSNQIDLEWLSGLSSLVYFNLGGADLSKAGAYWLEVFNKLHSFVELHLPNCNLPSLPLSF 234 (598)
Q Consensus 155 p~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~ 234 (598)
+..|.++++|++|++++|.+.... ...++++++|++|++++|.+..... +..+..+++|++|++++|.+++..+ .
T Consensus 117 ~~~f~~L~~L~~L~Ls~N~l~~l~--~~~~~~L~~L~~L~Ls~N~l~~~~~--~~~~~~l~~L~~L~L~~N~l~~~~~-~ 191 (635)
T 4g8a_A 117 LGAFSGLSSLQKLVAVETNLASLE--NFPIGHLKTLKELNVAHNLIQSFKL--PEYFSNLTNLEHLDLSSNKIQSIYC-T 191 (635)
T ss_dssp GGGGTTCTTCCEEECTTSCCCCST--TCCCTTCTTCCEEECCSSCCCCCCC--CGGGGGCTTCCEEECCSSCCCEECG-G
T ss_pred HHHhcCCCCCCEEECCCCcCCCCC--hhhhhcCcccCeeccccCccccCCC--chhhccchhhhhhcccCcccccccc-c
Confidence 567888999999999988765432 2347888899999999998876532 5677888899999999998887654 2
Q ss_pred CcCCCCC----ccEEEccCCCCCCCcchhhhcCCCCCEEEccCCcccccC-Cccc-------------------------
Q 037325 235 PSLNFAS----LQVLDLSNNDFNSTTPHWLFNITSLLCLDLGSNDLQGDI-PDGF------------------------- 284 (598)
Q Consensus 235 ~~~~l~~----L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~-~~~l------------------------- 284 (598)
.+..+.+ ...++++.|.++...+..+ ....++.+++.+|...... +..+
T Consensus 192 ~l~~L~~l~~~~~~~~ls~n~l~~i~~~~~-~~~~~~~l~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~ 270 (635)
T 4g8a_A 192 DLRVLHQMPLLNLSLDLSLNPMNFIQPGAF-KEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKF 270 (635)
T ss_dssp GGHHHHTCTTCCCEEECTTCCCCEECTTTT-TTCEEEEEEEESCCSSHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCC
T ss_pred cccchhhhhhhhhhhhcccCcccccCcccc-cchhhhhhhhhcccccccccchhhcCCcccccccccccccccccccccc
Confidence 2222222 3356666666654333222 2222334444433221100 0011
Q ss_pred --------------------------------cCCCCccEEECcCCCcCccccchhhcCCCCCCEEecccccCCcccchh
Q 037325 285 --------------------------------ASLNSLQELDLSGNSFLGGQLSRNLGKLCNLRTMILSRNNISSEVSDF 332 (598)
Q Consensus 285 --------------------------------~~l~~L~~L~l~~n~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~ 332 (598)
....+++.+.+.++.+ .. ...+.....++.|++.+|.+.......
T Consensus 271 ~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~-~~--~~~~~~~~~L~~L~l~~~~~~~~~~~~ 347 (635)
T 4g8a_A 271 DKSALEGLCNLTIEEFRLAYLDYYLDGIIDLFNCLTNVSSFSLVSVTI-ER--VKDFSYNFGWQHLELVNCKFGQFPTLK 347 (635)
T ss_dssp CTTTTGGGGGSEEEEEEEECCCSCEEECTTTTGGGTTCSEEEEESCEE-EE--CGGGGSCCCCSEEEEESCEESSCCCCB
T ss_pred cccccccccchhhhhhhhhhhcccccchhhhhhhhccccccccccccc-cc--ccccccchhhhhhhcccccccCcCccc
Confidence 1122233333333321 10 112333445555555555544332221
Q ss_pred hhCCCCCCCCCCccEEEccCccccccCccccCCCCCCCEEEccCCcCCc--cchhhccCCCCCCEEeCcCCcCCcccCCC
Q 037325 333 LDGLSECTNSILLEKLELRFNQFTGILPISLGSLKNLRHLVLWQNSFLG--SIPPSIGNLTLLKELYLASNQMNGQKISD 410 (598)
Q Consensus 333 ~~~l~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~ls~n~l~~--~~~~~l~~l~~L~~L~l~~n~l~~~~~~~ 410 (598)
+. .|+.+++..|.+... .....+++|+.+++++|.+.. ..+..+..+.+|+.+++..+.+....
T Consensus 348 ---l~------~L~~l~l~~n~~~~~--~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~~~~~~~~~~~--- 413 (635)
T 4g8a_A 348 ---LK------SLKRLTFTSNKGGNA--FSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTISLKYLDLSFNGVITMS--- 413 (635)
T ss_dssp ---CT------TCCEEEEESCCSCCB--CCCCBCTTCCEEECCSSCCBEEEECCHHHHSCSCCCEEECCSCSEEEEC---
T ss_pred ---ch------hhhhcccccccCCCC--cccccccccccchhhccccccccccccchhhhhhhhhhhcccccccccc---
Confidence 11 455666666655432 233456778888888777643 34455667777888888777665433
Q ss_pred chhhhcCCCCCCEEEccCccCccccchHHHhcCCCCCEEEccCCcCcccCCCCcccC-CCCEEEcccCcCcc-cCCC---
Q 037325 411 SYQHLKNQTELRTLVLNKARISDTISDWFWQLSLTLDELDVAYNELRGRVPNSLGFN-FPAKVDLSFNNFEG-RLLL--- 485 (598)
Q Consensus 411 ~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~ls~n~~~~~~p~~~~~~-~L~~l~ls~n~l~~-~~~~--- 485 (598)
..+..+++|+.+++.++......+...+..+..++.++++.|.+.+..+..+... .++.+++++|.+.+ ..|.
T Consensus 414 --~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~l~~l~~l~ls~n~l~~~~~~~~~~~~~L~~L~Ls~N~~~~~~~~~~~~ 491 (635)
T 4g8a_A 414 --SNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFT 491 (635)
T ss_dssp --SCCTTCTTCCEEECTTSEEESTTSSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCT
T ss_pred --ccccccccccchhhhhccccccccccccccccccccccccccccccccccccccchhhhhhhhhhcccccccCchhhh
Confidence 2356778888888888887666655545557888999999999988887777665 88999999987554 3333
Q ss_pred CCcCCcEEEccCCcccccCCchhhcccCCCCCccccCCCCeEeCcCCccccccchhccCCCCCCEEECCCCcCccccchh
Q 037325 486 WSFNVTKLYLRDNSFSGLIPNDIGQNLPFLTDLGNLKQLITLVISNNNLSGEIPLLFSNISFLYILDMSNNSLSGSTPES 565 (598)
Q Consensus 486 ~~~~L~~L~ls~n~l~~~~p~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~ 565 (598)
.+++|++|||++|++++..|..+.. +++|++|+|++|++++..|..|+++++|++|||++|++++..|..
T Consensus 492 ~l~~L~~L~Ls~N~L~~l~~~~f~~----------l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~ 561 (635)
T 4g8a_A 492 ELRNLTFLDLSQCQLEQLSPTAFNS----------LSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQE 561 (635)
T ss_dssp TCTTCCEEECTTSCCCEECTTTTTT----------CTTCCEEECTTSCCCBCCCGGGTTCTTCCEEECTTSCCCBCCSSC
T ss_pred hccccCEEECCCCccCCcChHHHcC----------CCCCCEEECCCCcCCCCChhHHhCCCCCCEEECCCCcCCCCCHHH
Confidence 3578999999999999877877776 889999999999999888888999999999999999999888888
Q ss_pred ccCC-CCCCEEEccCCCCcc
Q 037325 566 IGSL-RTVKFLVLRNNYLSG 584 (598)
Q Consensus 566 l~~l-~~L~~L~l~~n~l~g 584 (598)
+..+ ++|++|++++|+++.
T Consensus 562 l~~l~~~L~~L~L~~Np~~C 581 (635)
T 4g8a_A 562 LQHFPSSLAFLNLTQNDFAC 581 (635)
T ss_dssp TTCCCTTCCEEECTTCCBCC
T ss_pred HHhhhCcCCEEEeeCCCCcc
Confidence 8887 689999999998863
|
| >1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.6e-41 Score=352.81 Aligned_cols=399 Identities=22% Similarity=0.188 Sum_probs=251.3
Q ss_pred CCCCCCEEeCCCCCCCCCCcchhccCCCCCCEEECcCCCCCcccchhccCCCCC-------------CEEEccCCCCCCC
Q 037325 111 QLKDLEYLDLSMNNFTGFQVPEFIGSLKELRYLNLSGSFFSGTIPQTLGNLSNL-------------LYLDLNNFLDQSN 177 (598)
Q Consensus 111 ~l~~L~~L~Ls~n~l~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L-------------~~L~L~~n~~~~~ 177 (598)
+.++|++|++++|.+ + .+|..++++++|++|++++|++.|.+|..++++++| ++|++++|.+...
T Consensus 9 ~~~~L~~L~l~~n~l-~-~iP~~i~~L~~L~~L~l~~n~~~~~~p~~~~~l~~L~~l~l~~c~~~~l~~L~l~~~~l~~l 86 (454)
T 1jl5_A 9 SNTFLQEPLRHSSNL-T-EMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLDRQAHELELNNLGLSSL 86 (454)
T ss_dssp ---------------------------CCHHHHHHHHHHHHHTSCTTSCCCHHHHHHHHHHHHHHTCSEEECTTSCCSCC
T ss_pred ccccchhhhcccCch-h-hCChhHhcccchhhhhccCCcccccCCcccccchhcchhhhhhhhccCCCEEEecCCccccC
Confidence 457888999999988 4 488888999999999999998888889888888764 8888888776543
Q ss_pred ccChhhhcCCCCCcEEEcCCCCCCCCcccchHhhhcCCCCCEEEcCCCCCCCCCCCCCcCCCCCccEEEccCCCCCCCcc
Q 037325 178 QIDLEWLSGLSSLVYFNLGGADLSKAGAYWLEVFNKLHSFVELHLPNCNLPSLPLSFPSLNFASLQVLDLSNNDFNSTTP 257 (598)
Q Consensus 178 ~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~ 257 (598)
+. -.++|++|++++|.+.+.. . ..++|++|++++|.+++++.. .++|++|++++|++++ +|
T Consensus 87 p~------~~~~L~~L~l~~n~l~~lp----~---~~~~L~~L~l~~n~l~~l~~~-----~~~L~~L~L~~n~l~~-lp 147 (454)
T 1jl5_A 87 PE------LPPHLESLVASCNSLTELP----E---LPQSLKSLLVDNNNLKALSDL-----PPLLEYLGVSNNQLEK-LP 147 (454)
T ss_dssp CS------CCTTCSEEECCSSCCSSCC----C---CCTTCCEEECCSSCCSCCCSC-----CTTCCEEECCSSCCSS-CC
T ss_pred CC------CcCCCCEEEccCCcCCccc----c---ccCCCcEEECCCCccCcccCC-----CCCCCEEECcCCCCCC-Cc
Confidence 22 1367888888888888753 2 237888999999888876541 1688999999998886 56
Q ss_pred hhhhcCCCCCEEEccCCcccccCCccccCCCCccEEECcCCCcCccccchhhcCCCCCCEEecccccCCcccchhhhCCC
Q 037325 258 HWLFNITSLLCLDLGSNDLQGDIPDGFASLNSLQELDLSGNSFLGGQLSRNLGKLCNLRTMILSRNNISSEVSDFLDGLS 337 (598)
Q Consensus 258 ~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~ 337 (598)
.+.++++|++|++++|++++ +|..+ ++|++|++++|.+ .+ +| .++.+++|++|++++|.+.+. |... .
T Consensus 148 -~~~~l~~L~~L~l~~N~l~~-lp~~~---~~L~~L~L~~n~l-~~-l~-~~~~l~~L~~L~l~~N~l~~l-~~~~---~ 215 (454)
T 1jl5_A 148 -ELQNSSFLKIIDVDNNSLKK-LPDLP---PSLEFIAAGNNQL-EE-LP-ELQNLPFLTAIYADNNSLKKL-PDLP---L 215 (454)
T ss_dssp -CCTTCTTCCEEECCSSCCSC-CCCCC---TTCCEEECCSSCC-SS-CC-CCTTCTTCCEEECCSSCCSSC-CCCC---T
T ss_pred -ccCCCCCCCEEECCCCcCcc-cCCCc---ccccEEECcCCcC-Cc-Cc-cccCCCCCCEEECCCCcCCcC-CCCc---C
Confidence 48888899999999998874 55433 5888999999884 43 55 578888999999998888763 2211 2
Q ss_pred CCCCCCCccEEEccCccccccCccccCCCCCCCEEEccCCcCCccchhhccCCCCCCEEeCcCCcCCcccCCCchhhhcC
Q 037325 338 ECTNSILLEKLELRFNQFTGILPISLGSLKNLRHLVLWQNSFLGSIPPSIGNLTLLKELYLASNQMNGQKISDSYQHLKN 417 (598)
Q Consensus 338 ~~~~~~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~ls~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~ 417 (598)
+|++|++++|.++ .+| .++.+++|++|++++|++++ +|. .+++|++|++++|.+++. +. .
T Consensus 216 ------~L~~L~l~~n~l~-~lp-~~~~l~~L~~L~l~~N~l~~-l~~---~~~~L~~L~l~~N~l~~l--~~------~ 275 (454)
T 1jl5_A 216 ------SLESIVAGNNILE-ELP-ELQNLPFLTTIYADNNLLKT-LPD---LPPSLEALNVRDNYLTDL--PE------L 275 (454)
T ss_dssp ------TCCEEECCSSCCS-SCC-CCTTCTTCCEEECCSSCCSS-CCS---CCTTCCEEECCSSCCSCC--CC------C
T ss_pred ------cccEEECcCCcCC-ccc-ccCCCCCCCEEECCCCcCCc-ccc---cccccCEEECCCCccccc--Cc------c
Confidence 6889999998887 566 47888889999999988874 443 247888999999888763 32 1
Q ss_pred CCCCCEEEccCccCccccchHHHhcCCCCCEEEccCCcCcccCCCCcccCCCCEEEcccCcCcccCCCCCcCCcEEEccC
Q 037325 418 QTELRTLVLNKARISDTISDWFWQLSLTLDELDVAYNELRGRVPNSLGFNFPAKVDLSFNNFEGRLLLWSFNVTKLYLRD 497 (598)
Q Consensus 418 ~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~ls~n~~~~~~p~~~~~~~L~~l~ls~n~l~~~~~~~~~~L~~L~ls~ 497 (598)
.++|+.|++++|++++.. . ..++|++|++++|++++. +.. ...++.+++++|++++ +|..+++|++|++++
T Consensus 276 ~~~L~~L~ls~N~l~~l~-~----~~~~L~~L~l~~N~l~~i-~~~--~~~L~~L~Ls~N~l~~-lp~~~~~L~~L~L~~ 346 (454)
T 1jl5_A 276 PQSLTFLDVSENIFSGLS-E----LPPNLYYLNASSNEIRSL-CDL--PPSLEELNVSNNKLIE-LPALPPRLERLIASF 346 (454)
T ss_dssp CTTCCEEECCSSCCSEES-C----CCTTCCEEECCSSCCSEE-CCC--CTTCCEEECCSSCCSC-CCCCCTTCCEEECCS
T ss_pred cCcCCEEECcCCccCccc-C----cCCcCCEEECcCCcCCcc-cCC--cCcCCEEECCCCcccc-ccccCCcCCEEECCC
Confidence 367889999998887632 1 135788899998888762 211 1268888888888886 677778888888888
Q ss_pred CcccccCCchhhcccCCCCCccccCCCCeEeCcCCcccc--ccchhccCC-------------CCCCEEECCCCcCcc--
Q 037325 498 NSFSGLIPNDIGQNLPFLTDLGNLKQLITLVISNNNLSG--EIPLLFSNI-------------SFLYILDMSNNSLSG-- 560 (598)
Q Consensus 498 n~l~~~~p~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~--~~p~~~~~l-------------~~L~~L~ls~N~l~~-- 560 (598)
|+++ .+|. . +++|++|++++|++++ .+|.+++++ ++|++|++++|++++
T Consensus 347 N~l~-~lp~---~----------l~~L~~L~L~~N~l~~l~~ip~~l~~L~~n~~~~~i~~~~~~L~~L~ls~N~l~~~~ 412 (454)
T 1jl5_A 347 NHLA-EVPE---L----------PQNLKQLHVEYNPLREFPDIPESVEDLRMNSHLAEVPELPQNLKQLHVETNPLREFP 412 (454)
T ss_dssp SCCS-CCCC---C----------CTTCCEEECCSSCCSSCCCCCTTCCEEECCC--------------------------
T ss_pred Cccc-cccc---h----------hhhccEEECCCCCCCcCCCChHHHHhhhhcccccccccccCcCCEEECCCCcCCccc
Confidence 8887 4665 2 5788888888888887 678777766 566677777776665
Q ss_pred ccchhccCCCCCCEEEccCCCCcccCCcCcc
Q 037325 561 STPESIGSLRTVKFLVLRNNYLSGKLPLSLK 591 (598)
Q Consensus 561 ~~p~~l~~l~~L~~L~l~~n~l~g~~P~~~~ 591 (598)
.+|.+ ++.|++.+|.+.+.+|....
T Consensus 413 ~iP~s------l~~L~~~~~~~~~~~~~~~~ 437 (454)
T 1jl5_A 413 DIPES------VEDLRMNSERVVDPYEFAHE 437 (454)
T ss_dssp -------------------------------
T ss_pred cchhh------HhheeCcCcccCCccccCHH
Confidence 45532 44555666666666655443
|
| >4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.1e-41 Score=372.31 Aligned_cols=337 Identities=20% Similarity=0.236 Sum_probs=288.0
Q ss_pred CCCCCCCCCCCcCCCCCccEEEccCCCCCC-----------------Ccchhhh--cCCCCCEEEccCCcccccCCcccc
Q 037325 225 CNLPSLPLSFPSLNFASLQVLDLSNNDFNS-----------------TTPHWLF--NITSLLCLDLGSNDLQGDIPDGFA 285 (598)
Q Consensus 225 ~~l~~~~~~~~~~~l~~L~~L~L~~n~l~~-----------------~~~~~l~--~l~~L~~L~l~~n~l~~~~~~~l~ 285 (598)
|.++++| ..+.++++|++|++++|++++ .+|..+. ++++|+.|++++|.+.+.+|..+.
T Consensus 435 N~L~~IP--~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~ 512 (876)
T 4ecn_A 435 NRITFIS--KAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLY 512 (876)
T ss_dssp CEEEEEC--GGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGGGG
T ss_pred Ccccchh--HHHhcCCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCccChHHHh
Confidence 5666654 468899999999999999998 3888877 999999999999999999999999
Q ss_pred CCCCccEEECcCCCcCcc-ccchhhcCCC-------CCCEEecccccCCcccch--hhhCCCCCCCCCCccEEEccCccc
Q 037325 286 SLNSLQELDLSGNSFLGG-QLSRNLGKLC-------NLRTMILSRNNISSEVSD--FLDGLSECTNSILLEKLELRFNQF 355 (598)
Q Consensus 286 ~l~~L~~L~l~~n~~~~~-~~~~~l~~l~-------~L~~L~l~~n~l~~~~~~--~~~~l~~~~~~~~L~~L~Ls~n~l 355 (598)
++++|+.|++++|+++.+ .+|..++.++ +|++|++++|.+. .+|. .+..++ +|++|++++|.+
T Consensus 513 ~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~l~~L~------~L~~L~Ls~N~l 585 (876)
T 4ecn_A 513 DLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLE-EFPASASLQKMV------KLGLLDCVHNKV 585 (876)
T ss_dssp GCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCC-BCCCHHHHTTCT------TCCEEECTTSCC
T ss_pred CCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCC-ccCChhhhhcCC------CCCEEECCCCCc
Confidence 999999999999983455 6787666554 9999999999999 6776 788888 899999999999
Q ss_pred cccCccccCCCCCCCEEEccCCcCCccchhhccCCCC-CCEEeCcCCcCCcccCCCchhhhcCCCCCCEEEccCccCccc
Q 037325 356 TGILPISLGSLKNLRHLVLWQNSFLGSIPPSIGNLTL-LKELYLASNQMNGQKISDSYQHLKNQTELRTLVLNKARISDT 434 (598)
Q Consensus 356 ~~~~~~~l~~l~~L~~L~ls~n~l~~~~~~~l~~l~~-L~~L~l~~n~l~~~~~~~~~~~l~~~~~L~~L~l~~n~l~~~ 434 (598)
+ .+| .++.+++|+.|++++|++. .+|..+..+++ |+.|++++|.++. + |..+. ....++|+.|++++|++.+.
T Consensus 586 ~-~lp-~~~~L~~L~~L~Ls~N~l~-~lp~~l~~l~~~L~~L~Ls~N~L~~-l-p~~~~-~~~~~~L~~L~Ls~N~l~g~ 659 (876)
T 4ecn_A 586 R-HLE-AFGTNVKLTDLKLDYNQIE-EIPEDFCAFTDQVEGLGFSHNKLKY-I-PNIFN-AKSVYVMGSVDFSYNKIGSE 659 (876)
T ss_dssp C-BCC-CCCTTSEESEEECCSSCCS-CCCTTSCEECTTCCEEECCSSCCCS-C-CSCCC-TTCSSCEEEEECCSSCTTTT
T ss_pred c-cch-hhcCCCcceEEECcCCccc-cchHHHhhccccCCEEECcCCCCCc-C-chhhh-ccccCCCCEEECcCCcCCCc
Confidence 8 788 8999999999999999999 88888999999 9999999999983 3 54321 12234599999999999987
Q ss_pred cchHHHh----cCCCCCEEEccCCcCcccCCCCcc-c-CCCCEEEcccCcCcccCCCCC-----------cCCcEEEccC
Q 037325 435 ISDWFWQ----LSLTLDELDVAYNELRGRVPNSLG-F-NFPAKVDLSFNNFEGRLLLWS-----------FNVTKLYLRD 497 (598)
Q Consensus 435 ~~~~~~~----~~~~L~~L~ls~n~~~~~~p~~~~-~-~~L~~l~ls~n~l~~~~~~~~-----------~~L~~L~ls~ 497 (598)
+|..... ..++|++|++++|+++ .+|..+. . ..|+.|++++|++. .+|... ++|+.|+|++
T Consensus 660 ip~l~~~l~~~~~~~L~~L~Ls~N~L~-~lp~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~~~~~~~l~nl~~L~~L~Ls~ 737 (876)
T 4ecn_A 660 GRNISCSMDDYKGINASTVTLSYNEIQ-KFPTELFATGSPISTIILSNNLMT-SIPENSLKPKDGNYKNTYLLTTIDLRF 737 (876)
T ss_dssp SSSCSSCTTTCCCCCEEEEECCSSCCC-SCCHHHHHTTCCCSEEECCSCCCS-CCCTTSSSCTTSCCTTGGGCCEEECCS
T ss_pred cccchhhhccccCCCcCEEEccCCcCC-ccCHHHHccCCCCCEEECCCCcCC-ccChHHhccccccccccCCccEEECCC
Confidence 6643211 1348999999999999 5666554 3 38999999999998 555532 2899999999
Q ss_pred CcccccCCchhh--cccCCCCCccccCCCCeEeCcCCccccccchhccCCCCCCEEECCC------CcCccccchhccCC
Q 037325 498 NSFSGLIPNDIG--QNLPFLTDLGNLKQLITLVISNNNLSGEIPLLFSNISFLYILDMSN------NSLSGSTPESIGSL 569 (598)
Q Consensus 498 n~l~~~~p~~~~--~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ls~------N~l~~~~p~~l~~l 569 (598)
|+++ .+|..+. . +++|+.|+|++|.+++ +|..++++++|+.|+|++ |++.+.+|..+.++
T Consensus 738 N~L~-~lp~~l~~~~----------l~~L~~L~Ls~N~L~~-lp~~l~~L~~L~~L~Ls~N~~ls~N~l~~~ip~~l~~L 805 (876)
T 4ecn_A 738 NKLT-SLSDDFRATT----------LPYLSNMDVSYNCFSS-FPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTC 805 (876)
T ss_dssp SCCC-CCCGGGSTTT----------CTTCCEEECCSSCCSS-CCCGGGGCTTCCEEECCCCBCTTCCBCCCCCCTTGGGC
T ss_pred CCCc-cchHHhhhcc----------CCCcCEEEeCCCCCCc-cchhhhcCCCCCEEECCCCCCcccccccccChHHHhcC
Confidence 9999 8888876 5 8999999999999996 899999999999999977 88899999999999
Q ss_pred CCCCEEEccCCCCcccCCcCcc
Q 037325 570 RTVKFLVLRNNYLSGKLPLSLK 591 (598)
Q Consensus 570 ~~L~~L~l~~n~l~g~~P~~~~ 591 (598)
++|+.|++++|++ +.+|..+.
T Consensus 806 ~~L~~L~Ls~N~L-~~Ip~~l~ 826 (876)
T 4ecn_A 806 PSLIQLQIGSNDI-RKVDEKLT 826 (876)
T ss_dssp SSCCEEECCSSCC-CBCCSCCC
T ss_pred CCCCEEECCCCCC-CccCHhhc
Confidence 9999999999999 79999765
|
| >3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} | Back alignment and structure |
|---|
Probab=100.00 E-value=5.9e-40 Score=352.77 Aligned_cols=445 Identities=18% Similarity=0.170 Sum_probs=348.8
Q ss_pred CCCCCEEeCCCCCCCCCCcchhccCCCCCCEEECcCCCCCcccchhccCCCCCCEEEccCCCCCCCccChhhhcCCCCCc
Q 037325 112 LKDLEYLDLSMNNFTGFQVPEFIGSLKELRYLNLSGSFFSGTIPQTLGNLSNLLYLDLNNFLDQSNQIDLEWLSGLSSLV 191 (598)
Q Consensus 112 l~~L~~L~Ls~n~l~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~~l~~L~ 191 (598)
+...+++++++|+++ .+|..+. ++|++|++++|.+++..|..|.++++|++|++++|.+.. .....+.++++|+
T Consensus 30 ~~~~~~l~ls~~~L~--~ip~~~~--~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~--~~~~~~~~l~~L~ 103 (562)
T 3a79_B 30 NELESMVDYSNRNLT--HVPKDLP--PRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRS--LDFHVFLFNQDLE 103 (562)
T ss_dssp ---CCEEECTTSCCC--SCCTTSC--TTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCCE--ECTTTTTTCTTCC
T ss_pred cCCCcEEEcCCCCCc--cCCCCCC--CCcCEEECCCCCccccChhhhccCCCccEEECCCCCCCc--CCHHHhCCCCCCC
Confidence 344589999999999 4787654 899999999999997777899999999999999987653 3335589999999
Q ss_pred EEEcCCCCCCCCcccchHhhhcCCCCCEEEcCCCCCCCCCCCCCcCCCCCccEEEccCCCCCCCcchhhhcCCCC--CEE
Q 037325 192 YFNLGGADLSKAGAYWLEVFNKLHSFVELHLPNCNLPSLPLSFPSLNFASLQVLDLSNNDFNSTTPHWLFNITSL--LCL 269 (598)
Q Consensus 192 ~L~l~~n~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L--~~L 269 (598)
+|++++|.+.... .. .+++|++|++++|.+++.+....+.++++|++|++++|++++.. +..+++| +.|
T Consensus 104 ~L~Ls~N~l~~lp----~~--~l~~L~~L~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~~~~---~~~l~~L~L~~L 174 (562)
T 3a79_B 104 YLDVSHNRLQNIS----CC--PMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQLD---LLPVAHLHLSCI 174 (562)
T ss_dssp EEECTTSCCCEEC----SC--CCTTCSEEECCSSCCSBCCCCGGGGGCTTCCEEEEECSBCCTTT---TGGGTTSCEEEE
T ss_pred EEECCCCcCCccC----cc--ccccCCEEECCCCCccccCchHhhcccCcccEEecCCCccccCc---hhhhhhceeeEE
Confidence 9999999998653 23 79999999999999998765467889999999999999998643 4445555 999
Q ss_pred EccCCcc--cccCCccccCCC-CccEEECcCCCcCccccchhhcCCCCCCEEecccccCC----cccchhhhCCCCCCCC
Q 037325 270 DLGSNDL--QGDIPDGFASLN-SLQELDLSGNSFLGGQLSRNLGKLCNLRTMILSRNNIS----SEVSDFLDGLSECTNS 342 (598)
Q Consensus 270 ~l~~n~l--~~~~~~~l~~l~-~L~~L~l~~n~~~~~~~~~~l~~l~~L~~L~l~~n~l~----~~~~~~~~~l~~~~~~ 342 (598)
++++|.+ ++..|..+..+. ..-.+++++|.+........+..+++|+.+++++|+.. ......+..++
T Consensus 175 ~L~~n~l~~~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~l~~~~~~l~~l~----- 249 (562)
T 3a79_B 175 LLDLVSYHIKGGETESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGP----- 249 (562)
T ss_dssp EEEESSCCCCSSSCCEEEECCEEEEEEEECSSSCCCCCCEEEESSEEEEEEEEEECCSTTHHHHHHHHHHHHSCS-----
T ss_pred EeecccccccccCcccccccCcceEEEEecCccchhhhhhhcccccceEEEecccccccccchHHHHHHHHhccC-----
Confidence 9999999 777787777654 22256888888544334455678889999999988521 11123345555
Q ss_pred CCccEEEccCcccccc----CccccCCCCCCCEEEccCCcCCccchhhc-----cCCCCCCEEeCcCCcCCcccCC-Cch
Q 037325 343 ILLEKLELRFNQFTGI----LPISLGSLKNLRHLVLWQNSFLGSIPPSI-----GNLTLLKELYLASNQMNGQKIS-DSY 412 (598)
Q Consensus 343 ~~L~~L~Ls~n~l~~~----~~~~l~~l~~L~~L~ls~n~l~~~~~~~l-----~~l~~L~~L~l~~n~l~~~~~~-~~~ 412 (598)
.++.+++.++.+.+. ++..+ ..++|++|++++|.+.+.+|..+ ..++.|+.+++..+.+ .. | ..+
T Consensus 250 -~L~~L~L~~~~l~~~~~~~~~~~~-~~~~L~~L~l~~n~l~~~ip~~~~~~~~~~L~~L~~~~~~~~~~--~~-p~~~~ 324 (562)
T 3a79_B 250 -TLLNVTLQHIETTWKCSVKLFQFF-WPRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVF--LF-SKEAL 324 (562)
T ss_dssp -SCEEEEEEEEEECHHHHHHHHHHH-TTSSEEEEEEEEEEECSCCCCCCCCCCSCSCCEEEEEEEEECCC--SS-CHHHH
T ss_pred -cceEEEecCCcCcHHHHHHHHHhh-hcccccEEEEeccEeeccccchhhhcccccchheehhhccccee--ec-Chhhh
Confidence 788888887766543 22222 23599999999999998898877 6666666677777766 22 3 223
Q ss_pred hhhcCCCCCCEEEccCccCccccchHHHhcCCCCCEEEccCCcCcccCCCCcccC-CCCEEEcccCcCcc--cCC---CC
Q 037325 413 QHLKNQTELRTLVLNKARISDTISDWFWQLSLTLDELDVAYNELRGRVPNSLGFN-FPAKVDLSFNNFEG--RLL---LW 486 (598)
Q Consensus 413 ~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~ls~n~~~~~~p~~~~~~-~L~~l~ls~n~l~~--~~~---~~ 486 (598)
..+....+|+.|++++|.+...... ..+++|++|++++|++++.+|..+... .|+.+++++|++++ .+| ..
T Consensus 325 ~~~~~~~~L~~L~l~~n~~~~~~~~---~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~ 401 (562)
T 3a79_B 325 YSVFAEMNIKMLSISDTPFIHMVCP---PSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKN 401 (562)
T ss_dssp HHHHHTCCCSEEEEESSCCCCCCCC---SSCCCCCEEECCSSCCCTTTTTTCCSCSSCCEEECCSSCCCBTTHHHHTTTT
T ss_pred hhhhccCcceEEEccCCCcccccCc---cCCCCceEEECCCCccccchhhhhcccCCCCEEECCCCCcCCcccchhhhcC
Confidence 3333447899999999998654321 237899999999999999889888776 99999999999997 323 34
Q ss_pred CcCCcEEEccCCcccccCCchhhcccCCCCCccccCCCCeEeCcCCccccccchhccCCCCCCEEECCCCcCccccchhc
Q 037325 487 SFNVTKLYLRDNSFSGLIPNDIGQNLPFLTDLGNLKQLITLVISNNNLSGEIPLLFSNISFLYILDMSNNSLSGSTPESI 566 (598)
Q Consensus 487 ~~~L~~L~ls~n~l~~~~p~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~l 566 (598)
+++|++|++++|++++.+|.... ..+++|+.|++++|.+++.+|..+. ++|++|++++|+++ .+|..+
T Consensus 402 l~~L~~L~l~~N~l~~~~~~~~~---------~~l~~L~~L~l~~n~l~~~~~~~l~--~~L~~L~L~~N~l~-~ip~~~ 469 (562)
T 3a79_B 402 MSSLETLDVSLNSLNSHAYDRTC---------AWAESILVLNLSSNMLTGSVFRCLP--PKVKVLDLHNNRIM-SIPKDV 469 (562)
T ss_dssp CTTCCEEECTTSCCBSCCSSCCC---------CCCTTCCEEECCSSCCCGGGGSSCC--TTCSEEECCSSCCC-CCCTTT
T ss_pred CCCCCEEECCCCcCCCccChhhh---------cCcccCCEEECCCCCCCcchhhhhc--CcCCEEECCCCcCc-ccChhh
Confidence 78999999999999986776522 2389999999999999988887765 79999999999999 799888
Q ss_pred cCCCCCCEEEccCCCCcccCCcC-ccCcCCCC
Q 037325 567 GSLRTVKFLVLRNNYLSGKLPLS-LKNCTFQE 597 (598)
Q Consensus 567 ~~l~~L~~L~l~~n~l~g~~P~~-~~~~~~L~ 597 (598)
..+++|++|++++|+++ .+|.. +..+++|+
T Consensus 470 ~~l~~L~~L~L~~N~l~-~l~~~~~~~l~~L~ 500 (562)
T 3a79_B 470 THLQALQELNVASNQLK-SVPDGVFDRLTSLQ 500 (562)
T ss_dssp TSSCCCSEEECCSSCCC-CCCTTSTTTCTTCC
T ss_pred cCCCCCCEEECCCCCCC-CCCHHHHhcCCCCC
Confidence 89999999999999999 68877 88888775
|
| >4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=6.3e-39 Score=350.84 Aligned_cols=466 Identities=23% Similarity=0.168 Sum_probs=332.6
Q ss_pred ecCccccCCCCCCEEeCCCCCCCCCCcchhccCCCCCCEEECcCCCCCcccchhccCCCCCCEEEccCCCCCCCccChhh
Q 037325 104 EISPSLLQLKDLEYLDLSMNNFTGFQVPEFIGSLKELRYLNLSGSFFSGTIPQTLGNLSNLLYLDLNNFLDQSNQIDLEW 183 (598)
Q Consensus 104 ~~~~~l~~l~~L~~L~Ls~n~l~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~~~~~~~~~~~ 183 (598)
.+|..+. +++++|||++|+|+.. .+..|.++++|++|+|++|++++..|..|.++++|++|+|++|.+.. .....
T Consensus 45 ~vP~~lp--~~~~~LdLs~N~i~~l-~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~~--l~~~~ 119 (635)
T 4g8a_A 45 KIPDNLP--FSTKNLDLSFNPLRHL-GSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQS--LALGA 119 (635)
T ss_dssp SCCSSSC--TTCCEEECTTSCCCEE-CTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCE--ECGGG
T ss_pred ccCCCCC--cCCCEEEeeCCCCCCC-CHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCCC--CCHHH
Confidence 3555443 5899999999999964 45689999999999999999996667789999999999999987643 33456
Q ss_pred hcCCCCCcEEEcCCCCCCCCcccchHhhhcCCCCCEEEcCCCCCCCCCCCCCcCCCCCccEEEccCCCCCCCcchhhhcC
Q 037325 184 LSGLSSLVYFNLGGADLSKAGAYWLEVFNKLHSFVELHLPNCNLPSLPLSFPSLNFASLQVLDLSNNDFNSTTPHWLFNI 263 (598)
Q Consensus 184 ~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l 263 (598)
|.++++|++|++++|.++... +..|.++++|++|++++|.++.......+..+++|++|++++|++++..+..+..+
T Consensus 120 f~~L~~L~~L~Ls~N~l~~l~---~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~L 196 (635)
T 4g8a_A 120 FSGLSSLQKLVAVETNLASLE---NFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVL 196 (635)
T ss_dssp GTTCTTCCEEECTTSCCCCST---TCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHH
T ss_pred hcCCCCCCEEECCCCcCCCCC---hhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCccccccccccccch
Confidence 899999999999999999875 45689999999999999999887655677889999999999999998888777665
Q ss_pred CC----CCEEEccCCcccccCCccccCCCCccEEECcCCCcCccccchhhcCCCCCCEEecccccCC-------------
Q 037325 264 TS----LLCLDLGSNDLQGDIPDGFASLNSLQELDLSGNSFLGGQLSRNLGKLCNLRTMILSRNNIS------------- 326 (598)
Q Consensus 264 ~~----L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~l~~l~~L~~L~l~~n~l~------------- 326 (598)
++ ...++++.|.+....+. ......++.+++.+|.......+..+..++.++...+..+...
T Consensus 197 ~~l~~~~~~~~ls~n~l~~i~~~-~~~~~~~~~l~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~ 275 (635)
T 4g8a_A 197 HQMPLLNLSLDLSLNPMNFIQPG-AFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSAL 275 (635)
T ss_dssp HTCTTCCCEEECTTCCCCEECTT-TTTTCEEEEEEEESCCSSHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCTTTT
T ss_pred hhhhhhhhhhhcccCcccccCcc-cccchhhhhhhhhcccccccccchhhcCCccccccccccccccccccccccccccc
Confidence 44 34788999988754443 3344567778888775322223333444444443333211100
Q ss_pred -----------------ccc---chhhhCCC----------------CCCCCCCccEEEccCccccccCccccCCCCCCC
Q 037325 327 -----------------SEV---SDFLDGLS----------------ECTNSILLEKLELRFNQFTGILPISLGSLKNLR 370 (598)
Q Consensus 327 -----------------~~~---~~~~~~l~----------------~~~~~~~L~~L~Ls~n~l~~~~~~~l~~l~~L~ 370 (598)
... ...+.... .......++.|++.+|.+.+..+ ..++.|+
T Consensus 276 ~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~---~~l~~L~ 352 (635)
T 4g8a_A 276 EGLCNLTIEEFRLAYLDYYLDGIIDLFNCLTNVSSFSLVSVTIERVKDFSYNFGWQHLELVNCKFGQFPT---LKLKSLK 352 (635)
T ss_dssp GGGGGSEEEEEEEECCCSCEEECTTTTGGGTTCSEEEEESCEEEECGGGGSCCCCSEEEEESCEESSCCC---CBCTTCC
T ss_pred ccccchhhhhhhhhhhcccccchhhhhhhhcccccccccccccccccccccchhhhhhhcccccccCcCc---ccchhhh
Confidence 000 00001111 00111245555555555543222 2344556
Q ss_pred EEEccCCcCCccchhhccCCCCCCEEeCcCCcCCcccCCCchhhhcCCCCCCEEEccCccCccccchHHHhcCCCCCEEE
Q 037325 371 HLVLWQNSFLGSIPPSIGNLTLLKELYLASNQMNGQKISDSYQHLKNQTELRTLVLNKARISDTISDWFWQLSLTLDELD 450 (598)
Q Consensus 371 ~L~ls~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~ 450 (598)
.+++..|...... ....+++|+.+++++|.+....... .......+|+.+++..+.+....+. +.. ++.|+.++
T Consensus 353 ~l~l~~n~~~~~~--~~~~l~~L~~L~ls~n~l~~~~~~~--~~~~~~~~L~~L~~~~~~~~~~~~~-~~~-l~~L~~l~ 426 (635)
T 4g8a_A 353 RLTFTSNKGGNAF--SEVDLPSLEFLDLSRNGLSFKGCCS--QSDFGTISLKYLDLSFNGVITMSSN-FLG-LEQLEHLD 426 (635)
T ss_dssp EEEEESCCSCCBC--CCCBCTTCCEEECCSSCCBEEEECC--HHHHSCSCCCEEECCSCSEEEECSC-CTT-CTTCCEEE
T ss_pred hcccccccCCCCc--ccccccccccchhhccccccccccc--cchhhhhhhhhhhcccccccccccc-ccc-cccccchh
Confidence 6666665544222 2345677888888877765432111 2345667788888877776543332 222 67788888
Q ss_pred ccCCcCcccCCCCc-ccC-CCCEEEcccCcCcccCCCC---CcCCcEEEccCCccc-ccCCchhhcccCCCCCccccCCC
Q 037325 451 VAYNELRGRVPNSL-GFN-FPAKVDLSFNNFEGRLLLW---SFNVTKLYLRDNSFS-GLIPNDIGQNLPFLTDLGNLKQL 524 (598)
Q Consensus 451 ls~n~~~~~~p~~~-~~~-~L~~l~ls~n~l~~~~~~~---~~~L~~L~ls~n~l~-~~~p~~~~~~~~~~~~~~~l~~L 524 (598)
++.+......+... ... .++.+++++|.+.+..+.. +++++.|++++|++. +..|..+.. +++|
T Consensus 427 l~~~~~~~~~~~~~~~~l~~l~~l~ls~n~l~~~~~~~~~~~~~L~~L~Ls~N~~~~~~~~~~~~~----------l~~L 496 (635)
T 4g8a_A 427 FQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTE----------LRNL 496 (635)
T ss_dssp CTTSEEESTTSSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTT----------CTTC
T ss_pred hhhccccccccccccccccccccccccccccccccccccccchhhhhhhhhhcccccccCchhhhh----------cccc
Confidence 88887766555432 333 7889999999988766554 578999999999754 345655655 8999
Q ss_pred CeEeCcCCccccccchhccCCCCCCEEECCCCcCccccchhccCCCCCCEEEccCCCCcccCCcCccCc-CCCC
Q 037325 525 ITLVISNNNLSGEIPLLFSNISFLYILDMSNNSLSGSTPESIGSLRTVKFLVLRNNYLSGKLPLSLKNC-TFQE 597 (598)
Q Consensus 525 ~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~l~~l~~L~~L~l~~n~l~g~~P~~~~~~-~~L~ 597 (598)
+.|+|++|++++..|..|+++++|++|+|++|++++..|..|.++++|++|++++|++++..|+.+..+ ++|+
T Consensus 497 ~~L~Ls~N~L~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~~L~ 570 (635)
T 4g8a_A 497 TFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLA 570 (635)
T ss_dssp CEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCBCCCGGGTTCTTCCEEECTTSCCCBCCSSCTTCCCTTCC
T ss_pred CEEECCCCccCCcChHHHcCCCCCCEEECCCCcCCCCChhHHhCCCCCCEEECCCCcCCCCCHHHHHhhhCcCC
Confidence 999999999998899999999999999999999998889999999999999999999999999998877 5664
|
| >1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 | Back alignment and structure |
|---|
Probab=100.00 E-value=8e-41 Score=331.29 Aligned_cols=292 Identities=32% Similarity=0.491 Sum_probs=209.9
Q ss_pred CCCHHHHHHHHHHHhcCCCCCCCCCCC-CCCCCCC--cccEEecCCC--CcEEEEEcCCCCCCCCCCcccCCCCCcce--
Q 037325 31 GCQEAERKALLQFKQSLRDPSGQLSSW-VGEDCCS--WSGVSCNNRT--ASVIKLNLNNPFRDSFGSFEDDAGHELGG-- 103 (598)
Q Consensus 31 ~~~~~~~~~l~~~~~~~~~~~~~~~~W-~~~~~c~--w~gv~c~~~~--~~v~~L~L~~~~~~~~~~~~~~~~~~l~~-- 103 (598)
.|.++|++||++||+++.+|. .+.+| .+.+||. |.||+|+... ++|++|+|++ +++.+
T Consensus 2 ~c~~~~~~aL~~~k~~~~~~~-~l~~W~~~~~~C~~~w~gv~C~~~~~~~~l~~L~L~~--------------~~l~~~~ 66 (313)
T 1ogq_A 2 LCNPQDKQALLQIKKDLGNPT-TLSSWLPTTDCCNRTWLGVLCDTDTQTYRVNNLDLSG--------------LNLPKPY 66 (313)
T ss_dssp CSCHHHHHHHHHHHHHTTCCG-GGTTCCTTSCTTTTCSTTEEECCSSSCCCEEEEEEEC--------------CCCSSCE
T ss_pred CCCHHHHHHHHHHHHhcCCcc-cccCCCCCCCCCcCCCcceEeCCCCCCceEEEEECCC--------------CCccCCc
Confidence 599999999999999998776 68899 5678998 9999998655 8999999998 78888
Q ss_pred ecCccccCCCCCCEEeCCC-CCCCCCCcchhccCCCCCCEEECcCCCCCcccchhccCCCCCCEEEccCCCCCCCccChh
Q 037325 104 EISPSLLQLKDLEYLDLSM-NNFTGFQVPEFIGSLKELRYLNLSGSFFSGTIPQTLGNLSNLLYLDLNNFLDQSNQIDLE 182 (598)
Q Consensus 104 ~~~~~l~~l~~L~~L~Ls~-n~l~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~~~~~~~~~~ 182 (598)
.+|..+.++++|++|++++ |.+.+. +|..+.++++|++|++++|++++.+|..+..+++|++|++++|.+.
T Consensus 67 ~~~~~l~~l~~L~~L~L~~~n~l~~~-~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~------- 138 (313)
T 1ogq_A 67 PIPSSLANLPYLNFLYIGGINNLVGP-IPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALS------- 138 (313)
T ss_dssp ECCGGGGGCTTCSEEEEEEETTEESC-CCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEEE-------
T ss_pred ccChhHhCCCCCCeeeCCCCCccccc-CChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCEEeCCCCccC-------
Confidence 8999999999999999995 888886 8999999999999999999999888888888888877777765432
Q ss_pred hhcCCCCCcEEEcCCCCCCCCcccchHhhhcCCCCCEEEcCCCCCCCCCCCCCcCCCCCccEEEccCCCCCCCcchhhhc
Q 037325 183 WLSGLSSLVYFNLGGADLSKAGAYWLEVFNKLHSFVELHLPNCNLPSLPLSFPSLNFASLQVLDLSNNDFNSTTPHWLFN 262 (598)
Q Consensus 183 ~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~ 262 (598)
+.. +..+. .+++|++|++++|++++.+|..+..
T Consensus 139 -------------------~~~---p~~~~-------------------------~l~~L~~L~L~~N~l~~~~p~~l~~ 171 (313)
T 1ogq_A 139 -------------------GTL---PPSIS-------------------------SLPNLVGITFDGNRISGAIPDSYGS 171 (313)
T ss_dssp -------------------SCC---CGGGG-------------------------GCTTCCEEECCSSCCEEECCGGGGC
T ss_pred -------------------CcC---ChHHh-------------------------cCCCCCeEECcCCcccCcCCHHHhh
Confidence 111 22232 3344555555555555555555555
Q ss_pred CC-CCCEEEccCCcccccCCccccCCCCccEEECcCCCcCccccchhhcCCCCCCEEecccccCCcccchhhhCCCCCCC
Q 037325 263 IT-SLLCLDLGSNDLQGDIPDGFASLNSLQELDLSGNSFLGGQLSRNLGKLCNLRTMILSRNNISSEVSDFLDGLSECTN 341 (598)
Q Consensus 263 l~-~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~~~~ 341 (598)
++ +|++|++++|.+++.+|..+..++ |++|++++|. +.+..|..+..+++|++|++++|.+++..+. +..++
T Consensus 172 l~~~L~~L~L~~N~l~~~~~~~~~~l~-L~~L~Ls~N~-l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~-~~~l~---- 244 (313)
T 1ogq_A 172 FSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSRNM-LEGDASVLFGSDKNTQKIHLAKNSLAFDLGK-VGLSK---- 244 (313)
T ss_dssp CCTTCCEEECCSSEEEEECCGGGGGCC-CSEEECCSSE-EEECCGGGCCTTSCCSEEECCSSEECCBGGG-CCCCT----
T ss_pred hhhcCcEEECcCCeeeccCChHHhCCc-ccEEECcCCc-ccCcCCHHHhcCCCCCEEECCCCceeeecCc-ccccC----
Confidence 55 566666666666655665555554 6666666666 4445555666666666666666666554443 33333
Q ss_pred CCCccEEEccCccccccCccccCCCCCCCEEEccCCcCCccchhhccCCCCCCEEeCcCCc
Q 037325 342 SILLEKLELRFNQFTGILPISLGSLKNLRHLVLWQNSFLGSIPPSIGNLTLLKELYLASNQ 402 (598)
Q Consensus 342 ~~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~ls~n~l~~~~~~~l~~l~~L~~L~l~~n~ 402 (598)
+|++|++++|.+++.+|..+..+++|++|++++|++++.+|.. ..+++|+.+++++|+
T Consensus 245 --~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~-~~l~~L~~l~l~~N~ 302 (313)
T 1ogq_A 245 --NLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQG-GNLQRFDVSAYANNK 302 (313)
T ss_dssp --TCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCCS-TTGGGSCGGGTCSSS
T ss_pred --CCCEEECcCCcccCcCChHHhcCcCCCEEECcCCcccccCCCC-ccccccChHHhcCCC
Confidence 6777777777776666766777777777777777777666654 666677777777765
|
| >1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.5e-40 Score=345.59 Aligned_cols=407 Identities=20% Similarity=0.203 Sum_probs=272.6
Q ss_pred CcEEEEEcCCCCCCCCCCcccCCCCCcceecCccccCCCCCCEEeCCCCCCCCCCcchhccCCCCC-------------C
Q 037325 75 ASVIKLNLNNPFRDSFGSFEDDAGHELGGEISPSLLQLKDLEYLDLSMNNFTGFQVPEFIGSLKEL-------------R 141 (598)
Q Consensus 75 ~~v~~L~L~~~~~~~~~~~~~~~~~~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~p~~~~~l~~L-------------~ 141 (598)
.+++++++++ +.+ |.+|.+++++++|++|++++|.+.+. +|..++++++| +
T Consensus 11 ~~L~~L~l~~--------------n~l-~~iP~~i~~L~~L~~L~l~~n~~~~~-~p~~~~~l~~L~~l~l~~c~~~~l~ 74 (454)
T 1jl5_A 11 TFLQEPLRHS--------------SNL-TEMPVEAENVKSKTEYYNAWSEWERN-APPGNGEQREMAVSRLRDCLDRQAH 74 (454)
T ss_dssp --------------------------------------CCHHHHHHHHHHHHHT-SCTTSCCCHHHHHHHHHHHHHHTCS
T ss_pred ccchhhhccc--------------Cch-hhCChhHhcccchhhhhccCCccccc-CCcccccchhcchhhhhhhhccCCC
Confidence 4677888887 788 89999999999999999999999886 99999988764 9
Q ss_pred EEECcCCCCCcccchhccCCCCCCEEEccCCCCCCCccChhhhcCCCCCcEEEcCCCCCCCCcccchHhhhcCCCCCEEE
Q 037325 142 YLNLSGSFFSGTIPQTLGNLSNLLYLDLNNFLDQSNQIDLEWLSGLSSLVYFNLGGADLSKAGAYWLEVFNKLHSFVELH 221 (598)
Q Consensus 142 ~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~l~~L~~L~ 221 (598)
+|++++|++++ +|.. .++|++|++++|.+...+. ..++|++|++++|.+.+.... .++|++|+
T Consensus 75 ~L~l~~~~l~~-lp~~---~~~L~~L~l~~n~l~~lp~------~~~~L~~L~l~~n~l~~l~~~-------~~~L~~L~ 137 (454)
T 1jl5_A 75 ELELNNLGLSS-LPEL---PPHLESLVASCNSLTELPE------LPQSLKSLLVDNNNLKALSDL-------PPLLEYLG 137 (454)
T ss_dssp EEECTTSCCSC-CCSC---CTTCSEEECCSSCCSSCCC------CCTTCCEEECCSSCCSCCCSC-------CTTCCEEE
T ss_pred EEEecCCcccc-CCCC---cCCCCEEEccCCcCCcccc------ccCCCcEEECCCCccCcccCC-------CCCCCEEE
Confidence 99999999984 5552 4789999999998765332 248999999999999875321 26999999
Q ss_pred cCCCCCCCCCCCCCcCCCCCccEEEccCCCCCCCcchhhhcCCCCCEEEccCCcccccCCccccCCCCccEEECcCCCcC
Q 037325 222 LPNCNLPSLPLSFPSLNFASLQVLDLSNNDFNSTTPHWLFNITSLLCLDLGSNDLQGDIPDGFASLNSLQELDLSGNSFL 301 (598)
Q Consensus 222 l~~~~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~ 301 (598)
+++|.+++++ .+..+++|++|++++|++++ +|.. .++|++|++++|.+++ +| .++.+++|++|++++|.+
T Consensus 138 L~~n~l~~lp---~~~~l~~L~~L~l~~N~l~~-lp~~---~~~L~~L~L~~n~l~~-l~-~~~~l~~L~~L~l~~N~l- 207 (454)
T 1jl5_A 138 VSNNQLEKLP---ELQNSSFLKIIDVDNNSLKK-LPDL---PPSLEFIAAGNNQLEE-LP-ELQNLPFLTAIYADNNSL- 207 (454)
T ss_dssp CCSSCCSSCC---CCTTCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCSS-CC-CCTTCTTCCEEECCSSCC-
T ss_pred CcCCCCCCCc---ccCCCCCCCEEECCCCcCcc-cCCC---cccccEEECcCCcCCc-Cc-cccCCCCCCEEECCCCcC-
Confidence 9999999865 37889999999999999986 4543 3589999999999986 56 589999999999999994
Q ss_pred ccccchhhcCCCCCCEEecccccCCcccchhhhCCCCCCCCCCccEEEccCccccccCccccCCCCCCCEEEccCCcCCc
Q 037325 302 GGQLSRNLGKLCNLRTMILSRNNISSEVSDFLDGLSECTNSILLEKLELRFNQFTGILPISLGSLKNLRHLVLWQNSFLG 381 (598)
Q Consensus 302 ~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~ls~n~l~~ 381 (598)
.+ +|.. .++|++|++++|.+. ..|. +..++ +|++|++++|++++ +|. .+++|+.|++++|++.+
T Consensus 208 ~~-l~~~---~~~L~~L~l~~n~l~-~lp~-~~~l~------~L~~L~l~~N~l~~-l~~---~~~~L~~L~l~~N~l~~ 271 (454)
T 1jl5_A 208 KK-LPDL---PLSLESIVAGNNILE-ELPE-LQNLP------FLTTIYADNNLLKT-LPD---LPPSLEALNVRDNYLTD 271 (454)
T ss_dssp SS-CCCC---CTTCCEEECCSSCCS-SCCC-CTTCT------TCCEEECCSSCCSS-CCS---CCTTCCEEECCSSCCSC
T ss_pred Cc-CCCC---cCcccEEECcCCcCC-cccc-cCCCC------CCCEEECCCCcCCc-ccc---cccccCEEECCCCcccc
Confidence 33 4433 258999999999988 4443 66666 89999999999985 453 34899999999999985
Q ss_pred cchhhccCCCCCCEEeCcCCcCCcccCCCchhhhcCCCCCCEEEccCccCccccchHHHhcCCCCCEEEccCCcCcccCC
Q 037325 382 SIPPSIGNLTLLKELYLASNQMNGQKISDSYQHLKNQTELRTLVLNKARISDTISDWFWQLSLTLDELDVAYNELRGRVP 461 (598)
Q Consensus 382 ~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~ls~n~~~~~~p 461 (598)
+|.. .++|++|++++|.+++.. . -.++|+.|++++|++++.. . ..++|++|++++|++++ +|
T Consensus 272 -l~~~---~~~L~~L~ls~N~l~~l~--~------~~~~L~~L~l~~N~l~~i~-~----~~~~L~~L~Ls~N~l~~-lp 333 (454)
T 1jl5_A 272 -LPEL---PQSLTFLDVSENIFSGLS--E------LPPNLYYLNASSNEIRSLC-D----LPPSLEELNVSNNKLIE-LP 333 (454)
T ss_dssp -CCCC---CTTCCEEECCSSCCSEES--C------CCTTCCEEECCSSCCSEEC-C----CCTTCCEEECCSSCCSC-CC
T ss_pred -cCcc---cCcCCEEECcCCccCccc--C------cCCcCCEEECcCCcCCccc-C----CcCcCCEEECCCCcccc-cc
Confidence 5543 478999999999998742 1 1268999999999998632 1 23589999999999996 56
Q ss_pred CCcccCCCCEEEcccCcCcccCCCCCcCCcEEEccCCcccc--cCCchhhccc-----CCCCCccccCCCCeEeCcCCcc
Q 037325 462 NSLGFNFPAKVDLSFNNFEGRLLLWSFNVTKLYLRDNSFSG--LIPNDIGQNL-----PFLTDLGNLKQLITLVISNNNL 534 (598)
Q Consensus 462 ~~~~~~~L~~l~ls~n~l~~~~~~~~~~L~~L~ls~n~l~~--~~p~~~~~~~-----~~~~~~~~l~~L~~L~Ls~N~l 534 (598)
..+ ..++.+++++|++++ +|..+++|++|++++|++++ .+|..++.+. +.+|. .+++|+.|++++|.+
T Consensus 334 ~~~--~~L~~L~L~~N~l~~-lp~~l~~L~~L~L~~N~l~~l~~ip~~l~~L~~n~~~~~i~~--~~~~L~~L~ls~N~l 408 (454)
T 1jl5_A 334 ALP--PRLERLIASFNHLAE-VPELPQNLKQLHVEYNPLREFPDIPESVEDLRMNSHLAEVPE--LPQNLKQLHVETNPL 408 (454)
T ss_dssp CCC--TTCCEEECCSSCCSC-CCCCCTTCCEEECCSSCCSSCCCCCTTCCEEECCC------------------------
T ss_pred ccC--CcCCEEECCCCcccc-ccchhhhccEEECCCCCCCcCCCChHHHHhhhhccccccccc--ccCcCCEEECCCCcC
Confidence 542 479999999999985 66678899999999999998 7888877631 22222 237899999999999
Q ss_pred cc--ccchhccCCCCCCEEECCCCcCccccchhccCC
Q 037325 535 SG--EIPLLFSNISFLYILDMSNNSLSGSTPESIGSL 569 (598)
Q Consensus 535 ~~--~~p~~~~~l~~L~~L~ls~N~l~~~~p~~l~~l 569 (598)
++ .+|. +++.|.+.+|.+.+.+|......
T Consensus 409 ~~~~~iP~------sl~~L~~~~~~~~~~~~~~~~~~ 439 (454)
T 1jl5_A 409 REFPDIPE------SVEDLRMNSERVVDPYEFAHETT 439 (454)
T ss_dssp -------------------------------------
T ss_pred Cccccchh------hHhheeCcCcccCCccccCHHHh
Confidence 97 6774 46777899999988877665544
|
| >3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.9e-38 Score=332.56 Aligned_cols=362 Identities=18% Similarity=0.147 Sum_probs=202.9
Q ss_pred CCCCEEECcCCCCCcccchhccCCCCCCEEEccCCCCCCCccChhhhcCCCCCcEEEcCCCCCCCCcccchHhhhcCCCC
Q 037325 138 KELRYLNLSGSFFSGTIPQTLGNLSNLLYLDLNNFLDQSNQIDLEWLSGLSSLVYFNLGGADLSKAGAYWLEVFNKLHSF 217 (598)
Q Consensus 138 ~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~l~~L 217 (598)
++|++|++++|.+++..|..|+++++|++|++++|....... +..|..+++|
T Consensus 30 ~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~----------------------------~~~~~~l~~L 81 (455)
T 3v47_A 30 AHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIR----------------------------NNTFRGLSSL 81 (455)
T ss_dssp TTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEEC----------------------------TTTTTTCTTC
T ss_pred CccCEEEecCCccCcCChhHhccCccccEEECcCCcccceEC----------------------------cccccccccC
Confidence 456666666666654445555555555555555443211000 1222233333
Q ss_pred CEEEcCCCCCCCCCCCCCcCCCCCccEEEccCCCCCCCcchh--hhcCCCCCEEEccCCcccccCCcc-ccCCCCccEEE
Q 037325 218 VELHLPNCNLPSLPLSFPSLNFASLQVLDLSNNDFNSTTPHW--LFNITSLLCLDLGSNDLQGDIPDG-FASLNSLQELD 294 (598)
Q Consensus 218 ~~L~l~~~~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~--l~~l~~L~~L~l~~n~l~~~~~~~-l~~l~~L~~L~ 294 (598)
++|++++|.+++..+ ..+.++++|++|++++|++++..+.. +..+++|++|++++|.+++..|.. +..+++|++|+
T Consensus 82 ~~L~Ls~n~l~~~~~-~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~ 160 (455)
T 3v47_A 82 IILKLDYNQFLQLET-GAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLD 160 (455)
T ss_dssp CEEECTTCTTCEECT-TTTTTCTTCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEE
T ss_pred CEEeCCCCccCccCh-hhccCcccCCEEeCCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEe
Confidence 333333333333322 33445566666666666665544333 555566666666666655444443 45555555555
Q ss_pred CcCCCcCccccchhhcCC--CCCCEEecccccCCcccchhhhCCCCCCCCCCccEEEccCccccccCccc--------cC
Q 037325 295 LSGNSFLGGQLSRNLGKL--CNLRTMILSRNNISSEVSDFLDGLSECTNSILLEKLELRFNQFTGILPIS--------LG 364 (598)
Q Consensus 295 l~~n~~~~~~~~~~l~~l--~~L~~L~l~~n~l~~~~~~~~~~l~~~~~~~~L~~L~Ls~n~l~~~~~~~--------l~ 364 (598)
+++|. +.+..+..+..+ + .++.|++++|.+.+..+.. +.
T Consensus 161 L~~n~-l~~~~~~~l~~l~~~------------------------------~L~~L~l~~n~l~~~~~~~~~~~~~~~~~ 209 (455)
T 3v47_A 161 LTFNK-VKSICEEDLLNFQGK------------------------------HFTLLRLSSITLQDMNEYWLGWEKCGNPF 209 (455)
T ss_dssp CTTCC-BSCCCTTTSGGGTTC------------------------------EEEEEECTTCBCTTCSTTCTTHHHHCCTT
T ss_pred CCCCc-ccccChhhhhccccc------------------------------cccccccccCcccccchhhcccccccccc
Confidence 55555 333334333332 3 3555555555554332222 22
Q ss_pred CCCCCCEEEccCCcCCccchhhccCC---CCCCEEeCcCCcCCcccCCCchhhhcCCCCCCEEEccCccCccccchHHHh
Q 037325 365 SLKNLRHLVLWQNSFLGSIPPSIGNL---TLLKELYLASNQMNGQKISDSYQHLKNQTELRTLVLNKARISDTISDWFWQ 441 (598)
Q Consensus 365 ~l~~L~~L~ls~n~l~~~~~~~l~~l---~~L~~L~l~~n~l~~~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~ 441 (598)
.+++|++|++++|++.+..|..+... ++|+.|++++|...+..... +.+.+..+..+..
T Consensus 210 ~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~------------------~~~~~~~~~~~~~ 271 (455)
T 3v47_A 210 KNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGH------------------TNFKDPDNFTFKG 271 (455)
T ss_dssp TTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEECTTCTTTSCCTTC------------------CSSCCCCTTTTGG
T ss_pred ccceeeeEecCCCcccccchhhhhccccccceeeEeeccccccccccch------------------hhhccCccccccc
Confidence 34556666666666665555544332 56666666666544322000 0000000000000
Q ss_pred -cCCCCCEEEccCCcCcccCCCCcccC-CCCEEEcccCcCcccCCCC---CcCCcEEEccCCcccccCCchhhcccCCCC
Q 037325 442 -LSLTLDELDVAYNELRGRVPNSLGFN-FPAKVDLSFNNFEGRLLLW---SFNVTKLYLRDNSFSGLIPNDIGQNLPFLT 516 (598)
Q Consensus 442 -~~~~L~~L~ls~n~~~~~~p~~~~~~-~L~~l~ls~n~l~~~~~~~---~~~L~~L~ls~n~l~~~~p~~~~~~~~~~~ 516 (598)
..++|++|++++|.+++..|..+... .|+.|++++|++.+..+.. +++|++|++++|++++..|..+..
T Consensus 272 ~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~------ 345 (455)
T 3v47_A 272 LEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFEN------ 345 (455)
T ss_dssp GTTSCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGGTT------
T ss_pred ccccCceEEEecCccccccchhhcccCCCCCEEECCCCcccccChhHhcCcccCCEEECCCCccCCcChhHhcC------
Confidence 02344555555555554444444433 4555555555555443332 568888899999888776777766
Q ss_pred CccccCCCCeEeCcCCccccccchhccCCCCCCEEECCCCcCccccchhccCCCCCCEEEccCCCCcccCC
Q 037325 517 DLGNLKQLITLVISNNNLSGEIPLLFSNISFLYILDMSNNSLSGSTPESIGSLRTVKFLVLRNNYLSGKLP 587 (598)
Q Consensus 517 ~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~l~~l~~L~~L~l~~n~l~g~~P 587 (598)
+++|++|+|++|.+++..|..|.++++|++|++++|++++..+..+..+++|++|++++|++++..|
T Consensus 346 ----l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~ 412 (455)
T 3v47_A 346 ----LDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 412 (455)
T ss_dssp ----CTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTT
T ss_pred ----cccCCEEECCCCcccccChhhccccccccEEECCCCccccCCHhHhccCCcccEEEccCCCcccCCC
Confidence 8899999999999988888889999999999999999997666677889999999999999998887
|
| >3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.6e-38 Score=331.41 Aligned_cols=383 Identities=22% Similarity=0.243 Sum_probs=220.8
Q ss_pred CCCCccc--EEecCCC--------CcEEEEEcCCCCCCCCCCcccCCCCCcceecCccccCCCCCCEEeCCCCCCCCCCc
Q 037325 61 DCCSWSG--VSCNNRT--------ASVIKLNLNNPFRDSFGSFEDDAGHELGGEISPSLLQLKDLEYLDLSMNNFTGFQV 130 (598)
Q Consensus 61 ~~c~w~g--v~c~~~~--------~~v~~L~L~~~~~~~~~~~~~~~~~~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~ 130 (598)
..|.|.+ |.|+... .++++|+|++ +.+.+..|..+.++++|++|++++|.+.+.-.
T Consensus 6 ~~c~~~~~~~~c~~~~l~~lp~l~~~l~~L~Ls~--------------n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~ 71 (455)
T 3v47_A 6 SECSVIGYNAICINRGLHQVPELPAHVNYVDLSL--------------NSIAELNETSFSRLQDLQFLKVEQQTPGLVIR 71 (455)
T ss_dssp -CCEEETTEEECCSSCCSSCCCCCTTCCEEECCS--------------SCCCEECTTTTSSCTTCCEEECCCCSTTCEEC
T ss_pred ceeEEEccccCcCCCCcccCCCCCCccCEEEecC--------------CccCcCChhHhccCccccEEECcCCcccceEC
Confidence 3455544 7775422 4566677766 56666666667777777777777776654312
Q ss_pred chhccCCCCCCEEECcCCCCCcccchhccCCCCCCEEEccCCCCCCCccChhhhcCCCCCcEEEcCCCCCCCCcccchHh
Q 037325 131 PEFIGSLKELRYLNLSGSFFSGTIPQTLGNLSNLLYLDLNNFLDQSNQIDLEWLSGLSSLVYFNLGGADLSKAGAYWLEV 210 (598)
Q Consensus 131 p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~ 210 (598)
+..+.++++|++|++++|++++..|..|+++++|++|++++|.+.........+.++++|++|++++|.+.+..+ ...
T Consensus 72 ~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~--~~~ 149 (455)
T 3v47_A 72 NNTFRGLSSLIILKLDYNQFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQP--ASF 149 (455)
T ss_dssp TTTTTTCTTCCEEECTTCTTCEECTTTTTTCTTCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCC--CGG
T ss_pred cccccccccCCEEeCCCCccCccChhhccCcccCCEEeCCCCCCCccccCcccccCcccCCEEECCCCccCccCc--ccc
Confidence 445666777777777777776666666777777777777766554322222335666666666666666665532 122
Q ss_pred hhcCCCCCEEEcCCCCCCCCCCCCCcCCC--CCccEEEccCCCCCCCcchhh--------hcCCCCCEEEccCCcccccC
Q 037325 211 FNKLHSFVELHLPNCNLPSLPLSFPSLNF--ASLQVLDLSNNDFNSTTPHWL--------FNITSLLCLDLGSNDLQGDI 280 (598)
Q Consensus 211 ~~~l~~L~~L~l~~~~l~~~~~~~~~~~l--~~L~~L~L~~n~l~~~~~~~l--------~~l~~L~~L~l~~n~l~~~~ 280 (598)
+..+++|++|++++|.+++..+ ..+..+ .+|+.|++++|.+.+..+..+ ..+++|++|++++|.+.+..
T Consensus 150 ~~~l~~L~~L~L~~n~l~~~~~-~~l~~l~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~ 228 (455)
T 3v47_A 150 FLNMRRFHVLDLTFNKVKSICE-EDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESM 228 (455)
T ss_dssp GGGCTTCCEEECTTCCBSCCCT-TTSGGGTTCEEEEEECTTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHH
T ss_pred cCCCCcccEEeCCCCcccccCh-hhhhccccccccccccccCcccccchhhccccccccccccceeeeEecCCCcccccc
Confidence 5566666666666666665544 222222 456666666666554333221 23445555566555555544
Q ss_pred CccccC---CCCccEEECcCCCcCccccchhhcCCCCCCEEecccccCCcccchhhhCCCCCCCCCCccEEEccCccccc
Q 037325 281 PDGFAS---LNSLQELDLSGNSFLGGQLSRNLGKLCNLRTMILSRNNISSEVSDFLDGLSECTNSILLEKLELRFNQFTG 357 (598)
Q Consensus 281 ~~~l~~---l~~L~~L~l~~n~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~~~~~~~L~~L~Ls~n~l~~ 357 (598)
|..+.. .++|+.|++++|........ .+.+.+.....+..+. ..+|++|++++|.+.+
T Consensus 229 ~~~~~~~~~~~~L~~L~l~~~~~~~~~~~---------------~~~~~~~~~~~~~~~~----~~~L~~L~l~~n~l~~ 289 (455)
T 3v47_A 229 AKRFFDAIAGTKIQSLILSNSYNMGSSFG---------------HTNFKDPDNFTFKGLE----ASGVKTCDLSKSKIFA 289 (455)
T ss_dssp HHHHHHHTTTCCEEEEECTTCTTTSCCTT---------------CCSSCCCCTTTTGGGT----TSCCCEEECCSSCCCE
T ss_pred hhhhhccccccceeeEeeccccccccccc---------------hhhhccCccccccccc----ccCceEEEecCccccc
Confidence 443322 24555555555542111000 0011111111111110 1257777777777776
Q ss_pred cCccccCCCCCCCEEEccCCcCCccchhhccCCCCCCEEeCcCCcCCcccCCCchhhhcCCCCCCEEEccCccCccccch
Q 037325 358 ILPISLGSLKNLRHLVLWQNSFLGSIPPSIGNLTLLKELYLASNQMNGQKISDSYQHLKNQTELRTLVLNKARISDTISD 437 (598)
Q Consensus 358 ~~~~~l~~l~~L~~L~ls~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~ 437 (598)
..|..+..+++|++|++++|++.+..|..+..+++|++|++++|.+++.. + ..+..+++|++|++++|++++..|.
T Consensus 290 ~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~-~---~~~~~l~~L~~L~Ls~N~l~~~~~~ 365 (455)
T 3v47_A 290 LLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSID-S---RMFENLDKLEVLDLSYNHIRALGDQ 365 (455)
T ss_dssp ECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEEC-G---GGGTTCTTCCEEECCSSCCCEECTT
T ss_pred cchhhcccCCCCCEEECCCCcccccChhHhcCcccCCEEECCCCccCCcC-h---hHhcCcccCCEEECCCCcccccChh
Confidence 66666777777777777777777666666777777777777777765543 2 2355667777777777777666665
Q ss_pred HHHhcCCCCCEEEccCCcCcccCCCCcccC-CCCEEEcccCcCcccCC
Q 037325 438 WFWQLSLTLDELDVAYNELRGRVPNSLGFN-FPAKVDLSFNNFEGRLL 484 (598)
Q Consensus 438 ~~~~~~~~L~~L~ls~n~~~~~~p~~~~~~-~L~~l~ls~n~l~~~~~ 484 (598)
.+.. +++|++|++++|++++..+..+... .|+.+++++|++.+..|
T Consensus 366 ~~~~-l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~ 412 (455)
T 3v47_A 366 SFLG-LPNLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 412 (455)
T ss_dssp TTTT-CTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTT
T ss_pred hccc-cccccEEECCCCccccCCHhHhccCCcccEEEccCCCcccCCC
Confidence 5554 5677777777777776555444443 67777777777776655
|
| >3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.8e-37 Score=320.26 Aligned_cols=365 Identities=20% Similarity=0.178 Sum_probs=208.1
Q ss_pred cceecCccccCCCCCCEEeCCCCCCCCCCcchhccCCCCCCEEECcCCCCCcccchhccCCCCCCEEEccCCCCCCCccC
Q 037325 101 LGGEISPSLLQLKDLEYLDLSMNNFTGFQVPEFIGSLKELRYLNLSGSFFSGTIPQTLGNLSNLLYLDLNNFLDQSNQID 180 (598)
Q Consensus 101 l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~~~~~~~~ 180 (598)
..+..+..++++++|++|++++|.+++ +| .+..+++|++|++++|++++ +| ++.+++|++|++++|.+....
T Consensus 30 ~~~~~~~~~~~l~~L~~L~Ls~n~l~~--~~-~l~~l~~L~~L~Ls~n~l~~-~~--~~~l~~L~~L~Ls~N~l~~~~-- 101 (457)
T 3bz5_A 30 MQATDTISEEQLATLTSLDCHNSSITD--MT-GIEKLTGLTKLICTSNNITT-LD--LSQNTNLTYLACDSNKLTNLD-- 101 (457)
T ss_dssp CCTTSEEEHHHHTTCCEEECCSSCCCC--CT-TGGGCTTCSEEECCSSCCSC-CC--CTTCTTCSEEECCSSCCSCCC--
T ss_pred cCcccccChhHcCCCCEEEccCCCccc--Ch-hhcccCCCCEEEccCCcCCe-Ec--cccCCCCCEEECcCCCCceee--
Confidence 334445577889999999999999885 45 57889999999999999885 44 788888888888888765431
Q ss_pred hhhhcCCCCCcEEEcCCCCCCCCcccchHhhhcCCCCCEEEcCCCCCCCCCCCCCcCCCCCccEEEccCCCCCCCcchhh
Q 037325 181 LEWLSGLSSLVYFNLGGADLSKAGAYWLEVFNKLHSFVELHLPNCNLPSLPLSFPSLNFASLQVLDLSNNDFNSTTPHWL 260 (598)
Q Consensus 181 ~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l 260 (598)
+.++++|++|++++|.+.+. + +..+++|++|++++|.+++++ +..+++|++|++++|...+.+ .+
T Consensus 102 ---~~~l~~L~~L~L~~N~l~~l----~--~~~l~~L~~L~l~~N~l~~l~----l~~l~~L~~L~l~~n~~~~~~--~~ 166 (457)
T 3bz5_A 102 ---VTPLTKLTYLNCDTNKLTKL----D--VSQNPLLTYLNCARNTLTEID----VSHNTQLTELDCHLNKKITKL--DV 166 (457)
T ss_dssp ---CTTCTTCCEEECCSSCCSCC----C--CTTCTTCCEEECTTSCCSCCC----CTTCTTCCEEECTTCSCCCCC--CC
T ss_pred ---cCCCCcCCEEECCCCcCCee----c--CCCCCcCCEEECCCCccceec----cccCCcCCEEECCCCCccccc--cc
Confidence 66777777777777777654 1 556667777777777666642 345566666666666444333 24
Q ss_pred hcCCCCCEEEccCCcccccCCccccCCCCccEEECcCCCcCccccchhhcCCCCCCEEecccccCCcccchhhhCCCCCC
Q 037325 261 FNITSLLCLDLGSNDLQGDIPDGFASLNSLQELDLSGNSFLGGQLSRNLGKLCNLRTMILSRNNISSEVSDFLDGLSECT 340 (598)
Q Consensus 261 ~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~~~ 340 (598)
..+++|+.|++++|.+++ +| +..+++|+.|++++|.+ .+. .++.+++|++|++++|++++. | +..++
T Consensus 167 ~~l~~L~~L~ls~n~l~~-l~--l~~l~~L~~L~l~~N~l-~~~---~l~~l~~L~~L~Ls~N~l~~i-p--~~~l~--- 233 (457)
T 3bz5_A 167 TPQTQLTTLDCSFNKITE-LD--VSQNKLLNRLNCDTNNI-TKL---DLNQNIQLTFLDCSSNKLTEI-D--VTPLT--- 233 (457)
T ss_dssp TTCTTCCEEECCSSCCCC-CC--CTTCTTCCEEECCSSCC-SCC---CCTTCTTCSEEECCSSCCSCC-C--CTTCT---
T ss_pred ccCCcCCEEECCCCccce-ec--cccCCCCCEEECcCCcC-Cee---ccccCCCCCEEECcCCccccc-C--ccccC---
Confidence 555666666666666654 33 55555666666666652 221 244455555555555555542 2 22333
Q ss_pred CCCCccEEEccCccccccCccccCCCCCCCEEEccCCcCCccchhhccCCCCCCEEeCcCCcCCcccCCCchhhhcCCCC
Q 037325 341 NSILLEKLELRFNQFTGILPISLGSLKNLRHLVLWQNSFLGSIPPSIGNLTLLKELYLASNQMNGQKISDSYQHLKNQTE 420 (598)
Q Consensus 341 ~~~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~ls~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~~~~ 420 (598)
+|++|++++|++++.. ++.+++|+.|+++.| +|+.+++++|.+.+.. | ...+++
T Consensus 234 ---~L~~L~l~~N~l~~~~---~~~l~~L~~L~l~~n--------------~L~~L~l~~n~~~~~~-~-----~~~l~~ 287 (457)
T 3bz5_A 234 ---QLTYFDCSVNPLTELD---VSTLSKLTTLHCIQT--------------DLLEIDLTHNTQLIYF-Q-----AEGCRK 287 (457)
T ss_dssp ---TCSEEECCSSCCSCCC---CTTCTTCCEEECTTC--------------CCSCCCCTTCTTCCEE-E-----CTTCTT
T ss_pred ---CCCEEEeeCCcCCCcC---HHHCCCCCEEeccCC--------------CCCEEECCCCccCCcc-c-----cccccc
Confidence 4555555555554421 233444444444433 2344445555444333 1 233444
Q ss_pred CCEEEccCccCccccchHHHhcCCCCCEEEccCCcCcccCCCCcccCCCCEEEcccCcCcccCCCCCcCCcEEEccCCcc
Q 037325 421 LRTLVLNKARISDTISDWFWQLSLTLDELDVAYNELRGRVPNSLGFNFPAKVDLSFNNFEGRLLLWSFNVTKLYLRDNSF 500 (598)
Q Consensus 421 L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~ls~n~~~~~~p~~~~~~~L~~l~ls~n~l~~~~~~~~~~L~~L~ls~n~l 500 (598)
|+.|++++|...+.+|.. .+.| +.+++++| ++|++|++++|++
T Consensus 288 L~~L~Ls~n~~l~~l~~~----~~~L-----------------------~~L~l~~~----------~~L~~L~L~~N~l 330 (457)
T 3bz5_A 288 IKELDVTHNTQLYLLDCQ----AAGI-----------------------TELDLSQN----------PKLVYLYLNNTEL 330 (457)
T ss_dssp CCCCCCTTCTTCCEEECT----TCCC-----------------------SCCCCTTC----------TTCCEEECTTCCC
T ss_pred CCEEECCCCcccceeccC----CCcc-----------------------eEechhhc----------ccCCEEECCCCcc
Confidence 445555544444333321 2233 33333333 3556666666666
Q ss_pred cccCCchhhcccCCCCCccccCCCCeEeCcCCccccccchhccCCCCCCEEECCCCcCccccchhccCCCCCCEEEccCC
Q 037325 501 SGLIPNDIGQNLPFLTDLGNLKQLITLVISNNNLSGEIPLLFSNISFLYILDMSNNSLSGSTPESIGSLRTVKFLVLRNN 580 (598)
Q Consensus 501 ~~~~p~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~l~~l~~L~~L~l~~n 580 (598)
++ ++ ++. +++|+.|++++|++++ ++.|+.|++++|+++|. +++..|+.+++++|
T Consensus 331 ~~-l~--l~~----------l~~L~~L~l~~N~l~~--------l~~L~~L~l~~n~l~g~-----~~~~~l~~l~l~~N 384 (457)
T 3bz5_A 331 TE-LD--VSH----------NTKLKSLSCVNAHIQD--------FSSVGKIPALNNNFEAE-----GQTITMPKETLTNN 384 (457)
T ss_dssp SC-CC--CTT----------CTTCSEEECCSSCCCB--------CTTGGGSSGGGTSEEEE-----EEEEECCCBCCBTT
T ss_pred cc-cc--ccc----------CCcCcEEECCCCCCCC--------ccccccccccCCcEEec-----ceeeecCccccccC
Confidence 54 22 333 5566666666666653 13444455666666554 23344555666666
Q ss_pred CCcccCCcCc
Q 037325 581 YLSGKLPLSL 590 (598)
Q Consensus 581 ~l~g~~P~~~ 590 (598)
+++|.||..+
T Consensus 385 ~l~g~ip~~~ 394 (457)
T 3bz5_A 385 SLTIAVSPDL 394 (457)
T ss_dssp BEEEECCTTC
T ss_pred cEEEEcChhH
Confidence 6666666544
|
| >3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=100.00 E-value=5.8e-37 Score=318.86 Aligned_cols=407 Identities=17% Similarity=0.130 Sum_probs=315.9
Q ss_pred CCcEEEEEcCCCCCCCCCCcccCCCCCcceecCccccCCCCCCEEeCCCCCCCCCCcchhccCCCCCCEEECcCCCCCcc
Q 037325 74 TASVIKLNLNNPFRDSFGSFEDDAGHELGGEISPSLLQLKDLEYLDLSMNNFTGFQVPEFIGSLKELRYLNLSGSFFSGT 153 (598)
Q Consensus 74 ~~~v~~L~L~~~~~~~~~~~~~~~~~~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~p~~~~~l~~L~~L~L~~n~l~~~ 153 (598)
-.+++.|++++ +.+++. | .+..+++|++|++++|++++ +| ++.+++|++|++++|++++
T Consensus 41 l~~L~~L~Ls~--------------n~l~~~-~-~l~~l~~L~~L~Ls~n~l~~--~~--~~~l~~L~~L~Ls~N~l~~- 99 (457)
T 3bz5_A 41 LATLTSLDCHN--------------SSITDM-T-GIEKLTGLTKLICTSNNITT--LD--LSQNTNLTYLACDSNKLTN- 99 (457)
T ss_dssp HTTCCEEECCS--------------SCCCCC-T-TGGGCTTCSEEECCSSCCSC--CC--CTTCTTCSEEECCSSCCSC-
T ss_pred cCCCCEEEccC--------------CCcccC-h-hhcccCCCCEEEccCCcCCe--Ec--cccCCCCCEEECcCCCCce-
Confidence 35789999998 677764 4 69999999999999999996 44 7899999999999999996
Q ss_pred cchhccCCCCCCEEEccCCCCCCCccChhhhcCCCCCcEEEcCCCCCCCCcccchHhhhcCCCCCEEEcCCCCCCCCCCC
Q 037325 154 IPQTLGNLSNLLYLDLNNFLDQSNQIDLEWLSGLSSLVYFNLGGADLSKAGAYWLEVFNKLHSFVELHLPNCNLPSLPLS 233 (598)
Q Consensus 154 ~p~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~ 233 (598)
+| ++.+++|++|++++|.+.... +..+++|++|++++|.+++. .+..+++|++|++++|...+..
T Consensus 100 ~~--~~~l~~L~~L~L~~N~l~~l~-----~~~l~~L~~L~l~~N~l~~l------~l~~l~~L~~L~l~~n~~~~~~-- 164 (457)
T 3bz5_A 100 LD--VTPLTKLTYLNCDTNKLTKLD-----VSQNPLLTYLNCARNTLTEI------DVSHNTQLTELDCHLNKKITKL-- 164 (457)
T ss_dssp CC--CTTCTTCCEEECCSSCCSCCC-----CTTCTTCCEEECTTSCCSCC------CCTTCTTCCEEECTTCSCCCCC--
T ss_pred ee--cCCCCcCCEEECCCCcCCeec-----CCCCCcCCEEECCCCcccee------ccccCCcCCEEECCCCCccccc--
Confidence 44 899999999999999876532 78999999999999999885 2678999999999999544332
Q ss_pred CCcCCCCCccEEEccCCCCCCCcchhhhcCCCCCEEEccCCcccccCCccccCCCCccEEECcCCCcCccccchhhcCCC
Q 037325 234 FPSLNFASLQVLDLSNNDFNSTTPHWLFNITSLLCLDLGSNDLQGDIPDGFASLNSLQELDLSGNSFLGGQLSRNLGKLC 313 (598)
Q Consensus 234 ~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~l~~l~ 313 (598)
.+..+++|++|++++|++++. | +..+++|+.|++++|.+++. .+..+++|++|++++|++ .+ +| +..++
T Consensus 165 -~~~~l~~L~~L~ls~n~l~~l-~--l~~l~~L~~L~l~~N~l~~~---~l~~l~~L~~L~Ls~N~l-~~-ip--~~~l~ 233 (457)
T 3bz5_A 165 -DVTPQTQLTTLDCSFNKITEL-D--VSQNKLLNRLNCDTNNITKL---DLNQNIQLTFLDCSSNKL-TE-ID--VTPLT 233 (457)
T ss_dssp -CCTTCTTCCEEECCSSCCCCC-C--CTTCTTCCEEECCSSCCSCC---CCTTCTTCSEEECCSSCC-SC-CC--CTTCT
T ss_pred -ccccCCcCCEEECCCCcccee-c--cccCCCCCEEECcCCcCCee---ccccCCCCCEEECcCCcc-cc-cC--ccccC
Confidence 356789999999999999974 4 78899999999999999864 388899999999999994 44 55 88999
Q ss_pred CCCEEecccccCCcccchhhhCCCCCCCCCCccEEEccCccccccCccccCCCCCCCEEEccCCcCCccchhhccCCCCC
Q 037325 314 NLRTMILSRNNISSEVSDFLDGLSECTNSILLEKLELRFNQFTGILPISLGSLKNLRHLVLWQNSFLGSIPPSIGNLTLL 393 (598)
Q Consensus 314 ~L~~L~l~~n~l~~~~~~~~~~l~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~ls~n~l~~~~~~~l~~l~~L 393 (598)
+|++|++++|++++..+ ..++ +|+.|++++| +|+.|++++|.+.+.+| +..+++|
T Consensus 234 ~L~~L~l~~N~l~~~~~---~~l~------~L~~L~l~~n--------------~L~~L~l~~n~~~~~~~--~~~l~~L 288 (457)
T 3bz5_A 234 QLTYFDCSVNPLTELDV---STLS------KLTTLHCIQT--------------DLLEIDLTHNTQLIYFQ--AEGCRKI 288 (457)
T ss_dssp TCSEEECCSSCCSCCCC---TTCT------TCCEEECTTC--------------CCSCCCCTTCTTCCEEE--CTTCTTC
T ss_pred CCCEEEeeCCcCCCcCH---HHCC------CCCEEeccCC--------------CCCEEECCCCccCCccc--ccccccC
Confidence 99999999999998653 3344 7899998765 46678899999888877 5788999
Q ss_pred CEEeCcCCcCCcccCCCchhhhcCCCCCCEEEccCccCccccchHHHhcCCCCCEEEccCCcCcccCCCCcccC-CCCEE
Q 037325 394 KELYLASNQMNGQKISDSYQHLKNQTELRTLVLNKARISDTISDWFWQLSLTLDELDVAYNELRGRVPNSLGFN-FPAKV 472 (598)
Q Consensus 394 ~~L~l~~n~l~~~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~ls~n~~~~~~p~~~~~~-~L~~l 472 (598)
+.|++++|...+.+ + ...+.|+.+++++| ++|++|++++|++++. + +... .|+.+
T Consensus 289 ~~L~Ls~n~~l~~l-~------~~~~~L~~L~l~~~--------------~~L~~L~L~~N~l~~l-~--l~~l~~L~~L 344 (457)
T 3bz5_A 289 KELDVTHNTQLYLL-D------CQAAGITELDLSQN--------------PKLVYLYLNNTELTEL-D--VSHNTKLKSL 344 (457)
T ss_dssp CCCCCTTCTTCCEE-E------CTTCCCSCCCCTTC--------------TTCCEEECTTCCCSCC-C--CTTCTTCSEE
T ss_pred CEEECCCCccccee-c------cCCCcceEechhhc--------------ccCCEEECCCCccccc-c--cccCCcCcEE
Confidence 99999999887765 3 23466777777665 5789999999999884 3 4444 88999
Q ss_pred EcccCcCcccCCCCCcCCcEEEccCCcccccCCchhhcccCCCCCccccCCCCeEeCcCCccccccchhccC-CCCCCEE
Q 037325 473 DLSFNNFEGRLLLWSFNVTKLYLRDNSFSGLIPNDIGQNLPFLTDLGNLKQLITLVISNNNLSGEIPLLFSN-ISFLYIL 551 (598)
Q Consensus 473 ~ls~n~l~~~~~~~~~~L~~L~ls~n~l~~~~p~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~-l~~L~~L 551 (598)
++++|++++ ++.|+.|++++|.++|. +. +..|+.+++++|+++|.+|..+.. ..++...
T Consensus 345 ~l~~N~l~~-----l~~L~~L~l~~n~l~g~-----~~----------~~~l~~l~l~~N~l~g~ip~~~~~~~~~~~~~ 404 (457)
T 3bz5_A 345 SCVNAHIQD-----FSSVGKIPALNNNFEAE-----GQ----------TITMPKETLTNNSLTIAVSPDLLDQFGNPMNI 404 (457)
T ss_dssp ECCSSCCCB-----CTTGGGSSGGGTSEEEE-----EE----------EEECCCBCCBTTBEEEECCTTCBCTTSCCCEE
T ss_pred ECCCCCCCC-----ccccccccccCCcEEec-----ce----------eeecCccccccCcEEEEcChhHhcccCceeec
Confidence 999999987 35788889999999876 12 577899999999999999986643 3445445
Q ss_pred ECCCCcCccccc--hhccCCC-----CCCEEEccCCCCcccCCcCccCcCCC
Q 037325 552 DMSNNSLSGSTP--ESIGSLR-----TVKFLVLRNNYLSGKLPLSLKNCTFQ 596 (598)
Q Consensus 552 ~ls~N~l~~~~p--~~l~~l~-----~L~~L~l~~n~l~g~~P~~~~~~~~L 596 (598)
.-..+....... -.+.+++ -+.....++|.++|.|+.-+.....+
T Consensus 405 ~~~~~~~y~~~~~~i~~k~~~~~~~~~~y~~~~~~~~fsG~i~~p~~~~~~~ 456 (457)
T 3bz5_A 405 EPGDGGVYDQATNTITWENLSTDNPAVTYTFTSENGAIVGTVTTPFEAPQPI 456 (457)
T ss_dssp EESSSEEEETTTTEEEESSCCTTSCEECEEEECTTSSEEEEEEEEBC-----
T ss_pred cCCCCccccCCCCeeEEEeccCCCceEEEEEecCCcEEeeEecccccccccC
Confidence 544433221111 1122221 22333445789999998877665543
|
| >1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A | Back alignment and structure |
|---|
Probab=100.00 E-value=2.4e-35 Score=309.24 Aligned_cols=345 Identities=26% Similarity=0.340 Sum_probs=233.3
Q ss_pred cCCCCCCEEEccCCCCCCCccChhhhcCCCCCcEEEcCCCCCCCCcccchHhhhcCCCCCEEEcCCCCCCCCCCCCCcCC
Q 037325 159 GNLSNLLYLDLNNFLDQSNQIDLEWLSGLSSLVYFNLGGADLSKAGAYWLEVFNKLHSFVELHLPNCNLPSLPLSFPSLN 238 (598)
Q Consensus 159 ~~l~~L~~L~L~~n~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~ 238 (598)
..++++++|++.++.+.... .+..+++|++|++++|.+.+.. . +..+++|++|++++|.+++.++ +.+
T Consensus 43 ~~l~~l~~L~l~~~~i~~l~----~~~~l~~L~~L~Ls~n~l~~~~----~-~~~l~~L~~L~l~~n~l~~~~~---~~~ 110 (466)
T 1o6v_A 43 TDLDQVTTLQADRLGIKSID----GVEYLNNLTQINFSNNQLTDIT----P-LKNLTKLVDILMNNNQIADITP---LAN 110 (466)
T ss_dssp HHHHTCCEEECCSSCCCCCT----TGGGCTTCCEEECCSSCCCCCG----G-GTTCTTCCEEECCSSCCCCCGG---GTT
T ss_pred hHhccccEEecCCCCCccCc----chhhhcCCCEEECCCCccCCch----h-hhccccCCEEECCCCccccChh---hcC
Confidence 34678899999887664332 3677888999999999888763 2 7888889999999888888764 677
Q ss_pred CCCccEEEccCCCCCCCcchhhhcCCCCCEEEccCCcccccCCccccCCCCccEEECcCCCcCccccchhhcCCCCCCEE
Q 037325 239 FASLQVLDLSNNDFNSTTPHWLFNITSLLCLDLGSNDLQGDIPDGFASLNSLQELDLSGNSFLGGQLSRNLGKLCNLRTM 318 (598)
Q Consensus 239 l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~l~~l~~L~~L 318 (598)
+++|++|++++|.+++..+ +.++++|++|++++|.+.+ ++ .+..+++|++|++.++. ... + .+..+++|++|
T Consensus 111 l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~-~~-~~~~l~~L~~L~l~~~~--~~~-~-~~~~l~~L~~L 182 (466)
T 1o6v_A 111 LTNLTGLTLFNNQITDIDP--LKNLTNLNRLELSSNTISD-IS-ALSGLTSLQQLSFGNQV--TDL-K-PLANLTTLERL 182 (466)
T ss_dssp CTTCCEEECCSSCCCCCGG--GTTCTTCSEEEEEEEEECC-CG-GGTTCTTCSEEEEEESC--CCC-G-GGTTCTTCCEE
T ss_pred CCCCCEEECCCCCCCCChH--HcCCCCCCEEECCCCccCC-Ch-hhccCCcccEeecCCcc--cCc-h-hhccCCCCCEE
Confidence 8889999998888876543 7888888899888888874 33 47788888888886432 222 2 27788888888
Q ss_pred ecccccCCcccchhhhCCCCCCCCCCccEEEccCccccccCccccCCCCCCCEEEccCCcCCccchhhccCCCCCCEEeC
Q 037325 319 ILSRNNISSEVSDFLDGLSECTNSILLEKLELRFNQFTGILPISLGSLKNLRHLVLWQNSFLGSIPPSIGNLTLLKELYL 398 (598)
Q Consensus 319 ~l~~n~l~~~~~~~~~~l~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~ls~n~l~~~~~~~l~~l~~L~~L~l 398 (598)
++++|.+.+.. .+..++ +|++|++++|.+.+..+ ++.+++|+.|++++|++.+. ..+..+++|++|++
T Consensus 183 ~l~~n~l~~~~--~l~~l~------~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l 250 (466)
T 1o6v_A 183 DISSNKVSDIS--VLAKLT------NLESLIATNNQISDITP--LGILTNLDELSLNGNQLKDI--GTLASLTNLTDLDL 250 (466)
T ss_dssp ECCSSCCCCCG--GGGGCT------TCSEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEEC
T ss_pred ECcCCcCCCCh--hhccCC------CCCEEEecCCccccccc--ccccCCCCEEECCCCCcccc--hhhhcCCCCCEEEC
Confidence 88888876542 345555 78888888888876544 56678888888888887743 34777888888888
Q ss_pred cCCcCCcccCCCchhhhcCCCCCCEEEccCccCccccchHHHhcCCCCCEEEccCCcCcccCCCCcccC-CCCEEEcccC
Q 037325 399 ASNQMNGQKISDSYQHLKNQTELRTLVLNKARISDTISDWFWQLSLTLDELDVAYNELRGRVPNSLGFN-FPAKVDLSFN 477 (598)
Q Consensus 399 ~~n~l~~~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~ls~n~~~~~~p~~~~~~-~L~~l~ls~n 477 (598)
++|.+++.. + +..+++|+.|++++|++++..+ + ..+++|++|++++|++++..+ +... .|+.|++++|
T Consensus 251 ~~n~l~~~~-~-----~~~l~~L~~L~l~~n~l~~~~~--~-~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~L~~n 319 (466)
T 1o6v_A 251 ANNQISNLA-P-----LSGLTKLTELKLGANQISNISP--L-AGLTALTNLELNENQLEDISP--ISNLKNLTYLTLYFN 319 (466)
T ss_dssp CSSCCCCCG-G-----GTTCTTCSEEECCSSCCCCCGG--G-TTCTTCSEEECCSSCCSCCGG--GGGCTTCSEEECCSS
T ss_pred CCCccccch-h-----hhcCCCCCEEECCCCccCcccc--c-cCCCccCeEEcCCCcccCchh--hcCCCCCCEEECcCC
Confidence 888877653 2 6677888888888888876554 2 336778888888887775433 2222 5555555555
Q ss_pred cCcccCCC-CCcCCcEEEccCCcccccCCchhhcccCCCCCccccCCCCeEeCcCCccccccchhccCCCCCCEEECCCC
Q 037325 478 NFEGRLLL-WSFNVTKLYLRDNSFSGLIPNDIGQNLPFLTDLGNLKQLITLVISNNNLSGEIPLLFSNISFLYILDMSNN 556 (598)
Q Consensus 478 ~l~~~~~~-~~~~L~~L~ls~n~l~~~~p~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ls~N 556 (598)
++.+..|. .+++|++|++++|++++. ..+.. +++|+.|++++|++++..| +.++++|+.|++++|
T Consensus 320 ~l~~~~~~~~l~~L~~L~l~~n~l~~~--~~l~~----------l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n 385 (466)
T 1o6v_A 320 NISDISPVSSLTKLQRLFFYNNKVSDV--SSLAN----------LTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQ 385 (466)
T ss_dssp CCSCCGGGGGCTTCCEEECCSSCCCCC--GGGTT----------CTTCCEEECCSSCCCBCGG--GTTCTTCCEEECCCE
T ss_pred cCCCchhhccCccCCEeECCCCccCCc--hhhcc----------CCCCCEEeCCCCccCccch--hhcCCCCCEEeccCC
Confidence 55543331 234555555555555432 12222 4555555555555554444 445555555555555
Q ss_pred cCcc
Q 037325 557 SLSG 560 (598)
Q Consensus 557 ~l~~ 560 (598)
++++
T Consensus 386 ~~~~ 389 (466)
T 1o6v_A 386 AWTN 389 (466)
T ss_dssp EEEC
T ss_pred cccC
Confidence 5443
|
| >1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A | Back alignment and structure |
|---|
Probab=100.00 E-value=9.7e-35 Score=304.58 Aligned_cols=344 Identities=25% Similarity=0.315 Sum_probs=184.9
Q ss_pred CCCCEEeCCCCCCCCCCcchhccCCCCCCEEECcCCCCCcccchhccCCCCCCEEEccCCCCCCCccChhhhcCCCCCcE
Q 037325 113 KDLEYLDLSMNNFTGFQVPEFIGSLKELRYLNLSGSFFSGTIPQTLGNLSNLLYLDLNNFLDQSNQIDLEWLSGLSSLVY 192 (598)
Q Consensus 113 ~~L~~L~Ls~n~l~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~~l~~L~~ 192 (598)
++++.|+++++.+.. +|. +..+++|++|++++|.+++. |. +..+++|++|++++|.+..... +.++++|++
T Consensus 46 ~~l~~L~l~~~~i~~--l~~-~~~l~~L~~L~Ls~n~l~~~-~~-~~~l~~L~~L~l~~n~l~~~~~----~~~l~~L~~ 116 (466)
T 1o6v_A 46 DQVTTLQADRLGIKS--IDG-VEYLNNLTQINFSNNQLTDI-TP-LKNLTKLVDILMNNNQIADITP----LANLTNLTG 116 (466)
T ss_dssp HTCCEEECCSSCCCC--CTT-GGGCTTCCEEECCSSCCCCC-GG-GTTCTTCCEEECCSSCCCCCGG----GTTCTTCCE
T ss_pred ccccEEecCCCCCcc--Ccc-hhhhcCCCEEECCCCccCCc-hh-hhccccCCEEECCCCccccChh----hcCCCCCCE
Confidence 344444444444442 232 34444455555554444422 22 4444444444444443322211 344444444
Q ss_pred EEcCCCCCCCCcccchHhhhcCCCCCEEEcCCCCCCCCCCCCCcCCCCCccEEEccCCCCCCCcchhhhcCCCCCEEEcc
Q 037325 193 FNLGGADLSKAGAYWLEVFNKLHSFVELHLPNCNLPSLPLSFPSLNFASLQVLDLSNNDFNSTTPHWLFNITSLLCLDLG 272 (598)
Q Consensus 193 L~l~~n~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~ 272 (598)
|++++|.+.+.. .+..+++|++|++++|.+.+.+ .+..+++|++|+++ |.+.+..+ +.++++|+.|+++
T Consensus 117 L~L~~n~l~~~~-----~~~~l~~L~~L~l~~n~l~~~~---~~~~l~~L~~L~l~-~~~~~~~~--~~~l~~L~~L~l~ 185 (466)
T 1o6v_A 117 LTLFNNQITDID-----PLKNLTNLNRLELSSNTISDIS---ALSGLTSLQQLSFG-NQVTDLKP--LANLTTLERLDIS 185 (466)
T ss_dssp EECCSSCCCCCG-----GGTTCTTCSEEEEEEEEECCCG---GGTTCTTCSEEEEE-ESCCCCGG--GTTCTTCCEEECC
T ss_pred EECCCCCCCCCh-----HHcCCCCCCEEECCCCccCCCh---hhccCCcccEeecC-CcccCchh--hccCCCCCEEECc
Confidence 444444444331 1444444444444444444432 23444555555553 22322211 4555555555555
Q ss_pred CCcccccCCccccCCCCccEEECcCCCcCccccchhhcCCCCCCEEecccccCCcccchhhhCCCCCCCCCCccEEEccC
Q 037325 273 SNDLQGDIPDGFASLNSLQELDLSGNSFLGGQLSRNLGKLCNLRTMILSRNNISSEVSDFLDGLSECTNSILLEKLELRF 352 (598)
Q Consensus 273 ~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~~~~~~~L~~L~Ls~ 352 (598)
+|.+.+. ..+..+++|++|++++|. +.+..+ ++.+++|++|++++|.+.+. ..+..++ +|++|++++
T Consensus 186 ~n~l~~~--~~l~~l~~L~~L~l~~n~-l~~~~~--~~~l~~L~~L~l~~n~l~~~--~~l~~l~------~L~~L~l~~ 252 (466)
T 1o6v_A 186 SNKVSDI--SVLAKLTNLESLIATNNQ-ISDITP--LGILTNLDELSLNGNQLKDI--GTLASLT------NLTDLDLAN 252 (466)
T ss_dssp SSCCCCC--GGGGGCTTCSEEECCSSC-CCCCGG--GGGCTTCCEEECCSSCCCCC--GGGGGCT------TCSEEECCS
T ss_pred CCcCCCC--hhhccCCCCCEEEecCCc-cccccc--ccccCCCCEEECCCCCcccc--hhhhcCC------CCCEEECCC
Confidence 5555422 224555555666665555 232222 44555566666666555543 1233333 566666666
Q ss_pred ccccccCccccCCCCCCCEEEccCCcCCccchhhccCCCCCCEEeCcCCcCCcccCCCchhhhcCCCCCCEEEccCccCc
Q 037325 353 NQFTGILPISLGSLKNLRHLVLWQNSFLGSIPPSIGNLTLLKELYLASNQMNGQKISDSYQHLKNQTELRTLVLNKARIS 432 (598)
Q Consensus 353 n~l~~~~~~~l~~l~~L~~L~ls~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~~~~L~~L~l~~n~l~ 432 (598)
|.+.+..+ +..+++|+.|++++|.+.+..+ +..+++|++|++++|++++.. .+..+++|+.|++++|+++
T Consensus 253 n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~------~~~~l~~L~~L~L~~n~l~ 322 (466)
T 1o6v_A 253 NQISNLAP--LSGLTKLTELKLGANQISNISP--LAGLTALTNLELNENQLEDIS------PISNLKNLTYLTLYFNNIS 322 (466)
T ss_dssp SCCCCCGG--GTTCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCSCCG------GGGGCTTCSEEECCSSCCS
T ss_pred Cccccchh--hhcCCCCCEEECCCCccCcccc--ccCCCccCeEEcCCCcccCch------hhcCCCCCCEEECcCCcCC
Confidence 66664433 5666666666666666664333 566666777777776665533 1455666666666666666
Q ss_pred cccchHHHhcCCCCCEEEccCCcCcccCCCCcccCCCCEEEcccCcCcccCCCCCcCCcEEEccCCcccccCCchhhccc
Q 037325 433 DTISDWFWQLSLTLDELDVAYNELRGRVPNSLGFNFPAKVDLSFNNFEGRLLLWSFNVTKLYLRDNSFSGLIPNDIGQNL 512 (598)
Q Consensus 433 ~~~~~~~~~~~~~L~~L~ls~n~~~~~~p~~~~~~~L~~l~ls~n~l~~~~~~~~~~L~~L~ls~n~l~~~~p~~~~~~~ 512 (598)
+..+ + ..+++|++|++++|++++. + . ...+++|+.|++++|++++..| +..
T Consensus 323 ~~~~--~-~~l~~L~~L~l~~n~l~~~-~-~--------------------l~~l~~L~~L~l~~n~l~~~~~--~~~-- 373 (466)
T 1o6v_A 323 DISP--V-SSLTKLQRLFFYNNKVSDV-S-S--------------------LANLTNINWLSAGHNQISDLTP--LAN-- 373 (466)
T ss_dssp CCGG--G-GGCTTCCEEECCSSCCCCC-G-G--------------------GTTCTTCCEEECCSSCCCBCGG--GTT--
T ss_pred Cchh--h-ccCccCCEeECCCCccCCc-h-h--------------------hccCCCCCEEeCCCCccCccch--hhc--
Confidence 6554 2 2356677777777666542 1 1 1235688999999999987766 555
Q ss_pred CCCCCccccCCCCeEeCcCCcccc
Q 037325 513 PFLTDLGNLKQLITLVISNNNLSG 536 (598)
Q Consensus 513 ~~~~~~~~l~~L~~L~Ls~N~l~~ 536 (598)
+++|+.|++++|.+++
T Consensus 374 --------l~~L~~L~l~~n~~~~ 389 (466)
T 1o6v_A 374 --------LTRITQLGLNDQAWTN 389 (466)
T ss_dssp --------CTTCCEEECCCEEEEC
T ss_pred --------CCCCCEEeccCCcccC
Confidence 8999999999999996
|
| >2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=5.5e-34 Score=300.21 Aligned_cols=303 Identities=22% Similarity=0.194 Sum_probs=146.5
Q ss_pred CCCEEEcCCCCCCCCCCCCCcCCCCCccEEEccCCCCCCCcchhhhcCCCCCEEEccCCcccccCCccccCCCCccEEEC
Q 037325 216 SFVELHLPNCNLPSLPLSFPSLNFASLQVLDLSNNDFNSTTPHWLFNITSLLCLDLGSNDLQGDIPDGFASLNSLQELDL 295 (598)
Q Consensus 216 ~L~~L~l~~~~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l 295 (598)
.+++|++++|.++++++ ..+..+++|++|++++|.+++..|..+.++++|++|++++|.+++..+..|..+++|++|++
T Consensus 33 ~l~~L~L~~n~l~~~~~-~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 111 (477)
T 2id5_A 33 ETRLLDLGKNRIKTLNQ-DEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDI 111 (477)
T ss_dssp TCSEEECCSSCCCEECT-TTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCSCCTTSSTTCTTCCEEEC
T ss_pred CCcEEECCCCccceECH-hHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCCcCCccCcccccCCCCCCEEEC
Confidence 44555555555544443 33444455555555555544444444445555555555555444333333444445555555
Q ss_pred cCCCcCccccchhhcCCCCCCEEecccccCCcccchhhhCCCCCCCCCCccEEEccCccccccCccccCCCCCCCEEEcc
Q 037325 296 SGNSFLGGQLSRNLGKLCNLRTMILSRNNISSEVSDFLDGLSECTNSILLEKLELRFNQFTGILPISLGSLKNLRHLVLW 375 (598)
Q Consensus 296 ~~n~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~ls 375 (598)
++|. +....+..+..+++|++|++++|.+.+..+..+..++ +|++|++++|.+++..+..+..+++|+.|+++
T Consensus 112 s~n~-i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~------~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~ 184 (477)
T 2id5_A 112 SENK-IVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLN------SLEQLTLEKCNLTSIPTEALSHLHGLIVLRLR 184 (477)
T ss_dssp TTSC-CCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCT------TCCEEEEESCCCSSCCHHHHTTCTTCCEEEEE
T ss_pred CCCc-cccCChhHccccccCCEEECCCCccceeChhhccCCC------CCCEEECCCCcCcccChhHhcccCCCcEEeCC
Confidence 5544 3333344444444444444444444444444444333 44444444444444333344444444444444
Q ss_pred CCcCCccchhhccCCCCCCEEeCcCCcCCcccCCCchhhhcCCCCCCEEEccCccCccccchHHHhcCCCCCEEEccCCc
Q 037325 376 QNSFLGSIPPSIGNLTLLKELYLASNQMNGQKISDSYQHLKNQTELRTLVLNKARISDTISDWFWQLSLTLDELDVAYNE 455 (598)
Q Consensus 376 ~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~ls~n~ 455 (598)
+|.+.+..+..+..+++|++|++++|...+.. +.. .....+|+.|++++|++++..+..+.. +++|++|++++|.
T Consensus 185 ~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~-~~~---~~~~~~L~~L~l~~n~l~~~~~~~~~~-l~~L~~L~Ls~n~ 259 (477)
T 2id5_A 185 HLNINAIRDYSFKRLYRLKVLEISHWPYLDTM-TPN---CLYGLNLTSLSITHCNLTAVPYLAVRH-LVYLRFLNLSYNP 259 (477)
T ss_dssp SCCCCEECTTCSCSCTTCCEEEEECCTTCCEE-CTT---TTTTCCCSEEEEESSCCCSCCHHHHTT-CTTCCEEECCSSC
T ss_pred CCcCcEeChhhcccCcccceeeCCCCcccccc-Ccc---cccCccccEEECcCCcccccCHHHhcC-ccccCeeECCCCc
Confidence 44444443334444444444444444433333 111 111224444444444444322222221 3444444444444
Q ss_pred CcccCCCCcccCCCCEEEcccCcCcccCCCCCcCCcEEEccCCcccccCCchhhcccCCCCCccccCCCCeEeCcCCccc
Q 037325 456 LRGRVPNSLGFNFPAKVDLSFNNFEGRLLLWSFNVTKLYLRDNSFSGLIPNDIGQNLPFLTDLGNLKQLITLVISNNNLS 535 (598)
Q Consensus 456 ~~~~~p~~~~~~~L~~l~ls~n~l~~~~~~~~~~L~~L~ls~n~l~~~~p~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~ 535 (598)
+++..+..+ ..+++|+.|++++|++++..|..+.. +++|+.|+|++|.++
T Consensus 260 l~~~~~~~~--------------------~~l~~L~~L~L~~n~l~~~~~~~~~~----------l~~L~~L~L~~N~l~ 309 (477)
T 2id5_A 260 ISTIEGSML--------------------HELLRLQEIQLVGGQLAVVEPYAFRG----------LNYLRVLNVSGNQLT 309 (477)
T ss_dssp CCEECTTSC--------------------TTCTTCCEEECCSSCCSEECTTTBTT----------CTTCCEEECCSSCCS
T ss_pred CCccChhhc--------------------cccccCCEEECCCCccceECHHHhcC----------cccCCEEECCCCcCc
Confidence 432222111 12456677777777776666655555 677777777777777
Q ss_pred cccchhccCCCCCCEEECCCCcCccc
Q 037325 536 GEIPLLFSNISFLYILDMSNNSLSGS 561 (598)
Q Consensus 536 ~~~p~~~~~l~~L~~L~ls~N~l~~~ 561 (598)
+..+..|.++++|++|++++|.+...
T Consensus 310 ~~~~~~~~~l~~L~~L~l~~N~l~c~ 335 (477)
T 2id5_A 310 TLEESVFHSVGNLETLILDSNPLACD 335 (477)
T ss_dssp CCCGGGBSCGGGCCEEECCSSCEECS
T ss_pred eeCHhHcCCCcccCEEEccCCCccCc
Confidence 55555667777777777777766543
|
| >2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=5.6e-33 Score=292.56 Aligned_cols=301 Identities=22% Similarity=0.233 Sum_probs=141.2
Q ss_pred CccEEEccCCCCCCCcchhhhcCCCCCEEEccCCcccccCCccccCCCCccEEECcCCCcCccccchhhcCCCCCCEEec
Q 037325 241 SLQVLDLSNNDFNSTTPHWLFNITSLLCLDLGSNDLQGDIPDGFASLNSLQELDLSGNSFLGGQLSRNLGKLCNLRTMIL 320 (598)
Q Consensus 241 ~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~l~~l~~L~~L~l 320 (598)
++++|++++|++++..+..+.++++|++|++++|.+++..|..|..+++|++|++++|. +....+..+..+++|++|++
T Consensus 33 ~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L 111 (477)
T 2id5_A 33 ETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNR-LKLIPLGVFTGLSNLTKLDI 111 (477)
T ss_dssp TCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSC-CCSCCTTSSTTCTTCCEEEC
T ss_pred CCcEEECCCCccceECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCCc-CCccCcccccCCCCCCEEEC
Confidence 44555555555554444445555555555555555544444445555555555555554 23333333444555555555
Q ss_pred ccccCCcccchhhhCCCCCCCCCCccEEEccCccccccCccccCCCCCCCEEEccCCcCCccchhhccCCCCCCEEeCcC
Q 037325 321 SRNNISSEVSDFLDGLSECTNSILLEKLELRFNQFTGILPISLGSLKNLRHLVLWQNSFLGSIPPSIGNLTLLKELYLAS 400 (598)
Q Consensus 321 ~~n~l~~~~~~~~~~l~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~ls~n~l~~~~~~~l~~l~~L~~L~l~~ 400 (598)
++|.+.+..+..+..++ +|++|++++|.+.+..+..+..+++|+.|++++|++++..+..+..+++|+.|++++
T Consensus 112 s~n~i~~~~~~~~~~l~------~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~ 185 (477)
T 2id5_A 112 SENKIVILLDYMFQDLY------NLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRH 185 (477)
T ss_dssp TTSCCCEECTTTTTTCT------TCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCSSCCHHHHTTCTTCCEEEEES
T ss_pred CCCccccCChhHccccc------cCCEEECCCCccceeChhhccCCCCCCEEECCCCcCcccChhHhcccCCCcEEeCCC
Confidence 55555444444444444 455555555555444444455555555555555555444444445555555555555
Q ss_pred CcCCcccCCCchhhhcCCCCCCEEEccCccCccccchHHHhcCCCCCEEEccCCcCcccCCCCcccCCCCEEEcccCcCc
Q 037325 401 NQMNGQKISDSYQHLKNQTELRTLVLNKARISDTISDWFWQLSLTLDELDVAYNELRGRVPNSLGFNFPAKVDLSFNNFE 480 (598)
Q Consensus 401 n~l~~~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~ls~n~~~~~~p~~~~~~~L~~l~ls~n~l~ 480 (598)
|.+.+.. +. .+..+++|+.|++++|...+.++..... ..+|++|++++|++++..+..+.
T Consensus 186 n~i~~~~-~~---~~~~l~~L~~L~l~~~~~~~~~~~~~~~-~~~L~~L~l~~n~l~~~~~~~~~--------------- 245 (477)
T 2id5_A 186 LNINAIR-DY---SFKRLYRLKVLEISHWPYLDTMTPNCLY-GLNLTSLSITHCNLTAVPYLAVR--------------- 245 (477)
T ss_dssp CCCCEEC-TT---CSCSCTTCCEEEEECCTTCCEECTTTTT-TCCCSEEEEESSCCCSCCHHHHT---------------
T ss_pred CcCcEeC-hh---hcccCcccceeeCCCCccccccCccccc-CccccEEECcCCcccccCHHHhc---------------
Confidence 5544432 21 2344445555555555444444433332 22455555555544421111111
Q ss_pred ccCCCCCcCCcEEEccCCcccccCCchhhcccCCCCCccccCCCCeEeCcCCccccccchhccCCCCCCEEECCCCcCcc
Q 037325 481 GRLLLWSFNVTKLYLRDNSFSGLIPNDIGQNLPFLTDLGNLKQLITLVISNNNLSGEIPLLFSNISFLYILDMSNNSLSG 560 (598)
Q Consensus 481 ~~~~~~~~~L~~L~ls~n~l~~~~p~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ls~N~l~~ 560 (598)
.+++|+.|++++|++++..+..+.. +++|+.|+|++|.+++..|..|.++++|++|++++|++++
T Consensus 246 -----~l~~L~~L~Ls~n~l~~~~~~~~~~----------l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~ 310 (477)
T 2id5_A 246 -----HLVYLRFLNLSYNPISTIEGSMLHE----------LLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTT 310 (477)
T ss_dssp -----TCTTCCEEECCSSCCCEECTTSCTT----------CTTCCEEECCSSCCSEECTTTBTTCTTCCEEECCSSCCSC
T ss_pred -----CccccCeeECCCCcCCccChhhccc----------cccCCEEECCCCccceECHHHhcCcccCCEEECCCCcCce
Confidence 1234444444444444333333332 4455555555555554445555555555555555555554
Q ss_pred ccchhccCCCCCCEEEccCCCCc
Q 037325 561 STPESIGSLRTVKFLVLRNNYLS 583 (598)
Q Consensus 561 ~~p~~l~~l~~L~~L~l~~n~l~ 583 (598)
..+..|..+++|++|++++|++.
T Consensus 311 ~~~~~~~~l~~L~~L~l~~N~l~ 333 (477)
T 2id5_A 311 LEESVFHSVGNLETLILDSNPLA 333 (477)
T ss_dssp CCGGGBSCGGGCCEEECCSSCEE
T ss_pred eCHhHcCCCcccCEEEccCCCcc
Confidence 44444445555555555555543
|
| >3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=9e-33 Score=283.01 Aligned_cols=310 Identities=20% Similarity=0.212 Sum_probs=201.4
Q ss_pred CCCCCCEEeCCCCCCCCCCcch-hccCCCCCCEEECcCCCCCcccchhccCCCCCCEEEccCCCCCCCccChhhhcCCCC
Q 037325 111 QLKDLEYLDLSMNNFTGFQVPE-FIGSLKELRYLNLSGSFFSGTIPQTLGNLSNLLYLDLNNFLDQSNQIDLEWLSGLSS 189 (598)
Q Consensus 111 ~l~~L~~L~Ls~n~l~~~~~p~-~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~~l~~ 189 (598)
.++++++|+++++.++. +|. .+..+++|++|++++|.+++..+..|..+++|++|++++|.+.... ...+.++++
T Consensus 43 ~l~~l~~l~l~~~~l~~--l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~--~~~~~~l~~ 118 (390)
T 3o6n_A 43 TLNNQKIVTFKNSTMRK--LPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLP--PHVFQNVPL 118 (390)
T ss_dssp GGCCCSEEEEESCEESE--ECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCC--TTTTTTCTT
T ss_pred ccCCceEEEecCCchhh--CChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCC--HHHhcCCCC
Confidence 35677777777777663 443 3566777777777777777555556777777777777776554322 234666777
Q ss_pred CcEEEcCCCCCCCCcccchHhhhcCCCCCEEEcCCCCCCCCCCCCCcCCCCCccEEEccCCCCCCCcchhhhcCCCCCEE
Q 037325 190 LVYFNLGGADLSKAGAYWLEVFNKLHSFVELHLPNCNLPSLPLSFPSLNFASLQVLDLSNNDFNSTTPHWLFNITSLLCL 269 (598)
Q Consensus 190 L~~L~l~~n~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L 269 (598)
|++|++++|.+.... ...+..+++|++|++++|.+++.++ ..+..+++|++|++++|++++.. +..+++|+.|
T Consensus 119 L~~L~L~~n~l~~l~---~~~~~~l~~L~~L~L~~n~l~~~~~-~~~~~l~~L~~L~l~~n~l~~~~---~~~l~~L~~L 191 (390)
T 3o6n_A 119 LTVLVLERNDLSSLP---RGIFHNTPKLTTLSMSNNNLERIED-DTFQATTSLQNLQLSSNRLTHVD---LSLIPSLFHA 191 (390)
T ss_dssp CCEEECCSSCCCCCC---TTTTTTCTTCCEEECCSSCCCBCCT-TTTSSCTTCCEEECCSSCCSBCC---GGGCTTCSEE
T ss_pred CCEEECCCCccCcCC---HHHhcCCCCCcEEECCCCccCccCh-hhccCCCCCCEEECCCCcCCccc---ccccccccee
Confidence 777777777776553 3345677777777777777776655 45566777777777777776542 4556777777
Q ss_pred EccCCcccccCCccccCCCCccEEECcCCCcCccccchhhcCCCCCCEEecccccCCcccchhhhCCCCCCCCCCccEEE
Q 037325 270 DLGSNDLQGDIPDGFASLNSLQELDLSGNSFLGGQLSRNLGKLCNLRTMILSRNNISSEVSDFLDGLSECTNSILLEKLE 349 (598)
Q Consensus 270 ~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~~~~~~~L~~L~ 349 (598)
++++|.+++ +...++|++|++++|.+ .. ++.. ..++|+.|++++|.+++. ..+..++ +|++|+
T Consensus 192 ~l~~n~l~~-----~~~~~~L~~L~l~~n~l-~~-~~~~--~~~~L~~L~l~~n~l~~~--~~l~~l~------~L~~L~ 254 (390)
T 3o6n_A 192 NVSYNLLST-----LAIPIAVEELDASHNSI-NV-VRGP--VNVELTILKLQHNNLTDT--AWLLNYP------GLVEVD 254 (390)
T ss_dssp ECCSSCCSE-----EECCSSCSEEECCSSCC-CE-EECC--CCSSCCEEECCSSCCCCC--GGGGGCT------TCSEEE
T ss_pred ecccccccc-----cCCCCcceEEECCCCee-ee-cccc--ccccccEEECCCCCCccc--HHHcCCC------CccEEE
Confidence 777776653 22345677777777763 22 2222 245777777777777654 3445555 677777
Q ss_pred ccCccccccCccccCCCCCCCEEEccCCcCCccchhhccCCCCCCEEeCcCCcCCcccCCCchhhhcCCCCCCEEEccCc
Q 037325 350 LRFNQFTGILPISLGSLKNLRHLVLWQNSFLGSIPPSIGNLTLLKELYLASNQMNGQKISDSYQHLKNQTELRTLVLNKA 429 (598)
Q Consensus 350 Ls~n~l~~~~~~~l~~l~~L~~L~ls~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~~~~L~~L~l~~n 429 (598)
+++|.+++..|..+..+++|++|++++|++++ +|..+..+++|++|++++|++++.+ . .+..+++|+.|++++|
T Consensus 255 Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~-~~~~~~~l~~L~~L~L~~n~l~~~~--~---~~~~l~~L~~L~L~~N 328 (390)
T 3o6n_A 255 LSYNELEKIMYHPFVKMQRLERLYISNNRLVA-LNLYGQPIPTLKVLDLSHNHLLHVE--R---NQPQFDRLENLYLDHN 328 (390)
T ss_dssp CCSSCCCEEESGGGTTCSSCCEEECCSSCCCE-EECSSSCCTTCCEEECCSSCCCCCG--G---GHHHHTTCSEEECCSS
T ss_pred CCCCcCCCcChhHccccccCCEEECCCCcCcc-cCcccCCCCCCCEEECCCCcceecC--c---cccccCcCCEEECCCC
Confidence 77777776667777777777777777777763 4555566777777777777776432 1 2455667777777777
Q ss_pred cCccccchHHHhcCCCCCEEEccCCcCcc
Q 037325 430 RISDTISDWFWQLSLTLDELDVAYNELRG 458 (598)
Q Consensus 430 ~l~~~~~~~~~~~~~~L~~L~ls~n~~~~ 458 (598)
++++... ..+++|++|++++|++.+
T Consensus 329 ~i~~~~~----~~~~~L~~L~l~~N~~~~ 353 (390)
T 3o6n_A 329 SIVTLKL----STHHTLKNLTLSHNDWDC 353 (390)
T ss_dssp CCCCCCC----CTTCCCSEEECCSSCEEH
T ss_pred ccceeCc----hhhccCCEEEcCCCCccc
Confidence 7765432 225677777777777765
|
| >3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.6e-32 Score=281.24 Aligned_cols=309 Identities=22% Similarity=0.245 Sum_probs=166.6
Q ss_pred CCCCCEEEcCCCCCCCCCCCCCcCCCCCccEEEccCCCCCCCcchhhhcCCCCCEEEccCCcccccCCccccCCCCccEE
Q 037325 214 LHSFVELHLPNCNLPSLPLSFPSLNFASLQVLDLSNNDFNSTTPHWLFNITSLLCLDLGSNDLQGDIPDGFASLNSLQEL 293 (598)
Q Consensus 214 l~~L~~L~l~~~~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L 293 (598)
+++++.++++++.++.++. ..+..+++|++|++++|.+++..+..+..+++|++|++++|.+++..|..+..+++|++|
T Consensus 44 l~~l~~l~l~~~~l~~l~~-~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 122 (390)
T 3o6n_A 44 LNNQKIVTFKNSTMRKLPA-ALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVL 122 (390)
T ss_dssp GCCCSEEEEESCEESEECT-HHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred cCCceEEEecCCchhhCCh-hHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEE
Confidence 4566666666666665554 334455666666666666665555556666666666666666665555555666666666
Q ss_pred ECcCCCcCccccchhhcCCCCCCEEecccccCCcccchhhhCCCCCCCCCCccEEEccCccccccCccccCCCCCCCEEE
Q 037325 294 DLSGNSFLGGQLSRNLGKLCNLRTMILSRNNISSEVSDFLDGLSECTNSILLEKLELRFNQFTGILPISLGSLKNLRHLV 373 (598)
Q Consensus 294 ~l~~n~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~ 373 (598)
++++|. +....+..+..+++|++|++++|.+.+..+..+..++ +|++|++++|.+++. .+..+++|+.|+
T Consensus 123 ~L~~n~-l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~------~L~~L~l~~n~l~~~---~~~~l~~L~~L~ 192 (390)
T 3o6n_A 123 VLERND-LSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATT------SLQNLQLSSNRLTHV---DLSLIPSLFHAN 192 (390)
T ss_dssp ECCSSC-CCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCT------TCCEEECCSSCCSBC---CGGGCTTCSEEE
T ss_pred ECCCCc-cCcCCHHHhcCCCCCcEEECCCCccCccChhhccCCC------CCCEEECCCCcCCcc---ccccccccceee
Confidence 666665 3332233345566666666666666555555555544 566666666665543 234455566666
Q ss_pred ccCCcCCccchhhccCCCCCCEEeCcCCcCCcccCCCchhhhcCCCCCCEEEccCccCccccchHHHhcCCCCCEEEccC
Q 037325 374 LWQNSFLGSIPPSIGNLTLLKELYLASNQMNGQKISDSYQHLKNQTELRTLVLNKARISDTISDWFWQLSLTLDELDVAY 453 (598)
Q Consensus 374 ls~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~ls~ 453 (598)
+++|.+.+ +...++|++|++++|.++... . ...++|+.|++++|++++. ..+.. +++|++|++++
T Consensus 193 l~~n~l~~-----~~~~~~L~~L~l~~n~l~~~~-~------~~~~~L~~L~l~~n~l~~~--~~l~~-l~~L~~L~Ls~ 257 (390)
T 3o6n_A 193 VSYNLLST-----LAIPIAVEELDASHNSINVVR-G------PVNVELTILKLQHNNLTDT--AWLLN-YPGLVEVDLSY 257 (390)
T ss_dssp CCSSCCSE-----EECCSSCSEEECCSSCCCEEE-C------CCCSSCCEEECCSSCCCCC--GGGGG-CTTCSEEECCS
T ss_pred cccccccc-----cCCCCcceEEECCCCeeeecc-c------cccccccEEECCCCCCccc--HHHcC-CCCccEEECCC
Confidence 66665542 123345666666666555432 1 1234566666666655543 22222 45556666666
Q ss_pred CcCcccCCCCcccCCCCEEEcccCcCcccCCCCCcCCcEEEccCCcccccCCchhhcccCCCCCccccCCCCeEeCcCCc
Q 037325 454 NELRGRVPNSLGFNFPAKVDLSFNNFEGRLLLWSFNVTKLYLRDNSFSGLIPNDIGQNLPFLTDLGNLKQLITLVISNNN 533 (598)
Q Consensus 454 n~~~~~~p~~~~~~~L~~l~ls~n~l~~~~~~~~~~L~~L~ls~n~l~~~~p~~~~~~~~~~~~~~~l~~L~~L~Ls~N~ 533 (598)
|.+++..|..+.. +++|++|++++|++++ +|..+.. +++|+.|++++|+
T Consensus 258 n~l~~~~~~~~~~--------------------l~~L~~L~L~~n~l~~-~~~~~~~----------l~~L~~L~L~~n~ 306 (390)
T 3o6n_A 258 NELEKIMYHPFVK--------------------MQRLERLYISNNRLVA-LNLYGQP----------IPTLKVLDLSHNH 306 (390)
T ss_dssp SCCCEEESGGGTT--------------------CSSCCEEECCSSCCCE-EECSSSC----------CTTCCEEECCSSC
T ss_pred CcCCCcChhHccc--------------------cccCCEEECCCCcCcc-cCcccCC----------CCCCCEEECCCCc
Confidence 5555544444433 3455555555555542 2332222 4555555555555
Q ss_pred cccccchhccCCCCCCEEECCCCcCccccchhccCCCCCCEEEccCCCCc
Q 037325 534 LSGEIPLLFSNISFLYILDMSNNSLSGSTPESIGSLRTVKFLVLRNNYLS 583 (598)
Q Consensus 534 l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~l~~l~~L~~L~l~~n~l~ 583 (598)
++ .+|..++.+++|++|++++|++++ +| +..+++|+.|++++|++.
T Consensus 307 l~-~~~~~~~~l~~L~~L~L~~N~i~~-~~--~~~~~~L~~L~l~~N~~~ 352 (390)
T 3o6n_A 307 LL-HVERNQPQFDRLENLYLDHNSIVT-LK--LSTHHTLKNLTLSHNDWD 352 (390)
T ss_dssp CC-CCGGGHHHHTTCSEEECCSSCCCC-CC--CCTTCCCSEEECCSSCEE
T ss_pred ce-ecCccccccCcCCEEECCCCccce-eC--chhhccCCEEEcCCCCcc
Confidence 55 444455555555555555555553 22 445555555555555554
|
| >4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.6e-31 Score=269.25 Aligned_cols=305 Identities=23% Similarity=0.320 Sum_probs=182.8
Q ss_pred cCCCCCEEEcCCCCCCCCCCCCCcCCCCCccEEEccCCCCCCCcchhhhcCCCCCEEEccCCcccccCCccccCCCCccE
Q 037325 213 KLHSFVELHLPNCNLPSLPLSFPSLNFASLQVLDLSNNDFNSTTPHWLFNITSLLCLDLGSNDLQGDIPDGFASLNSLQE 292 (598)
Q Consensus 213 ~l~~L~~L~l~~~~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~ 292 (598)
.+++|++|+++++.+..++. +..+++|++|++++|++++..+ +..+++|++|++++|.+++ + +.+..+++|++
T Consensus 42 ~l~~L~~L~l~~~~i~~~~~---~~~~~~L~~L~l~~n~i~~~~~--~~~l~~L~~L~L~~n~i~~-~-~~~~~l~~L~~ 114 (347)
T 4fmz_A 42 ELESITKLVVAGEKVASIQG---IEYLTNLEYLNLNGNQITDISP--LSNLVKLTNLYIGTNKITD-I-SALQNLTNLRE 114 (347)
T ss_dssp HHTTCSEEECCSSCCCCCTT---GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCC-C-GGGTTCTTCSE
T ss_pred hcccccEEEEeCCccccchh---hhhcCCccEEEccCCccccchh--hhcCCcCCEEEccCCcccC-c-hHHcCCCcCCE
Confidence 44455555555555544432 3345555555555555554322 5555555555555555543 2 23555555555
Q ss_pred EECcCCCcCccccchhhcCCCCCCEEecccccCCcccchhhhCCCCCCCCCCccEEEccCccccccCccccCCCCCCCEE
Q 037325 293 LDLSGNSFLGGQLSRNLGKLCNLRTMILSRNNISSEVSDFLDGLSECTNSILLEKLELRFNQFTGILPISLGSLKNLRHL 372 (598)
Q Consensus 293 L~l~~n~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L 372 (598)
|++++|.+ .. ++. +..+++|++|++++|......+. +..++ +|++|++++|.+.+..+ +..+++|+.|
T Consensus 115 L~l~~n~i-~~-~~~-~~~l~~L~~L~l~~n~~~~~~~~-~~~l~------~L~~L~l~~~~~~~~~~--~~~l~~L~~L 182 (347)
T 4fmz_A 115 LYLNEDNI-SD-ISP-LANLTKMYSLNLGANHNLSDLSP-LSNMT------GLNYLTVTESKVKDVTP--IANLTDLYSL 182 (347)
T ss_dssp EECTTSCC-CC-CGG-GTTCTTCCEEECTTCTTCCCCGG-GTTCT------TCCEEECCSSCCCCCGG--GGGCTTCSEE
T ss_pred EECcCCcc-cC-chh-hccCCceeEEECCCCCCcccccc-hhhCC------CCcEEEecCCCcCCchh--hccCCCCCEE
Confidence 55555552 22 222 45555555555555543333222 33333 56666666665553322 5556666666
Q ss_pred EccCCcCCccchhhccCCCCCCEEeCcCCcCCcccCCCchhhhcCCCCCCEEEccCccCccccchHHHhcCCCCCEEEcc
Q 037325 373 VLWQNSFLGSIPPSIGNLTLLKELYLASNQMNGQKISDSYQHLKNQTELRTLVLNKARISDTISDWFWQLSLTLDELDVA 452 (598)
Q Consensus 373 ~ls~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~ls 452 (598)
++++|.+.+.. . +..+++|+.+++++|.+++.. .+..+++|++|++++|++++..+ ...+++|++|+++
T Consensus 183 ~l~~n~l~~~~-~-~~~l~~L~~L~l~~n~l~~~~------~~~~~~~L~~L~l~~n~l~~~~~---~~~l~~L~~L~l~ 251 (347)
T 4fmz_A 183 SLNYNQIEDIS-P-LASLTSLHYFTAYVNQITDIT------PVANMTRLNSLKIGNNKITDLSP---LANLSQLTWLEIG 251 (347)
T ss_dssp ECTTSCCCCCG-G-GGGCTTCCEEECCSSCCCCCG------GGGGCTTCCEEECCSSCCCCCGG---GTTCTTCCEEECC
T ss_pred EccCCcccccc-c-ccCCCccceeecccCCCCCCc------hhhcCCcCCEEEccCCccCCCcc---hhcCCCCCEEECC
Confidence 66666655332 2 556666666666666655432 14555666666666666655433 2235666666666
Q ss_pred CCcCcccCCCCcccCCCCEEEcccCcCcccCCCCCcCCcEEEccCCcccccCCchhhcccCCCCCccccCCCCeEeCcCC
Q 037325 453 YNELRGRVPNSLGFNFPAKVDLSFNNFEGRLLLWSFNVTKLYLRDNSFSGLIPNDIGQNLPFLTDLGNLKQLITLVISNN 532 (598)
Q Consensus 453 ~n~~~~~~p~~~~~~~L~~l~ls~n~l~~~~~~~~~~L~~L~ls~n~l~~~~p~~~~~~~~~~~~~~~l~~L~~L~Ls~N 532 (598)
+|.+++. + . ...+++|++|++++|++++. | .+.. +++|+.|++++|
T Consensus 252 ~n~l~~~-~-~--------------------~~~l~~L~~L~l~~n~l~~~-~-~~~~----------l~~L~~L~L~~n 297 (347)
T 4fmz_A 252 TNQISDI-N-A--------------------VKDLTKLKMLNVGSNQISDI-S-VLNN----------LSQLNSLFLNNN 297 (347)
T ss_dssp SSCCCCC-G-G--------------------GTTCTTCCEEECCSSCCCCC-G-GGGG----------CTTCSEEECCSS
T ss_pred CCccCCC-h-h--------------------HhcCCCcCEEEccCCccCCC-h-hhcC----------CCCCCEEECcCC
Confidence 6665531 1 0 12356788888888888753 2 3444 899999999999
Q ss_pred ccccccchhccCCCCCCEEECCCCcCccccchhccCCCCCCEEEccCCCCc
Q 037325 533 NLSGEIPLLFSNISFLYILDMSNNSLSGSTPESIGSLRTVKFLVLRNNYLS 583 (598)
Q Consensus 533 ~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~l~~l~~L~~L~l~~n~l~ 583 (598)
.+++..|..++++++|++|++++|++++..| +..+++|++|++++|+++
T Consensus 298 ~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~N~i~ 346 (347)
T 4fmz_A 298 QLGNEDMEVIGGLTNLTTLFLSQNHITDIRP--LASLSKMDSADFANQVIK 346 (347)
T ss_dssp CCCGGGHHHHHTCTTCSEEECCSSSCCCCGG--GGGCTTCSEESSSCC---
T ss_pred cCCCcChhHhhccccCCEEEccCCccccccC--hhhhhccceeehhhhccc
Confidence 9998899999999999999999999997666 888999999999999886
|
| >3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.4e-32 Score=293.01 Aligned_cols=310 Identities=20% Similarity=0.206 Sum_probs=158.6
Q ss_pred CCCCCEEeCCCCCCCCCCcchhccCCCCCCEEECcCCCCCcccchhccCCCCCCEEEccCCCCCCCccChhhhcCCCCCc
Q 037325 112 LKDLEYLDLSMNNFTGFQVPEFIGSLKELRYLNLSGSFFSGTIPQTLGNLSNLLYLDLNNFLDQSNQIDLEWLSGLSSLV 191 (598)
Q Consensus 112 l~~L~~L~Ls~n~l~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~~l~~L~ 191 (598)
+++++.+++++|.+... .+..+..+++|++|++++|.+++..|..|+.+++|++|++++|.+.... ...+.++++|+
T Consensus 50 l~~l~~l~l~~~~l~~l-p~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~--~~~~~~l~~L~ 126 (597)
T 3oja_B 50 LNNQKIVTFKNSTMRKL-PAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLP--PHVFQNVPLLT 126 (597)
T ss_dssp GCCCSEEEESSCEESEE-CTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCC--TTTTTTCTTCC
T ss_pred CCCceEEEeeCCCCCCc-CHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCC--HHHHcCCCCCC
Confidence 44555555555555532 2223445555555555555555444445555555555555555443221 22345555555
Q ss_pred EEEcCCCCCCCCcccchHhhhcCCCCCEEEcCCCCCCCCCCCCCcCCCCCccEEEccCCCCCCCcchhhhcCCCCCEEEc
Q 037325 192 YFNLGGADLSKAGAYWLEVFNKLHSFVELHLPNCNLPSLPLSFPSLNFASLQVLDLSNNDFNSTTPHWLFNITSLLCLDL 271 (598)
Q Consensus 192 ~L~l~~n~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l 271 (598)
+|++++|.+.... +..|..+++|++|++++|.+++.++ ..+..+++|++|++++|.+++.. +..+++|+.|++
T Consensus 127 ~L~L~~n~l~~l~---~~~~~~l~~L~~L~Ls~N~l~~~~~-~~~~~l~~L~~L~L~~N~l~~~~---~~~l~~L~~L~l 199 (597)
T 3oja_B 127 VLVLERNDLSSLP---RGIFHNTPKLTTLSMSNNNLERIED-DTFQATTSLQNLQLSSNRLTHVD---LSLIPSLFHANV 199 (597)
T ss_dssp EEECCSSCCCCCC---TTTTTTCTTCCEEECCSSCCCBCCT-TTTTTCTTCCEEECTTSCCSBCC---GGGCTTCSEEEC
T ss_pred EEEeeCCCCCCCC---HHHhccCCCCCEEEeeCCcCCCCCh-hhhhcCCcCcEEECcCCCCCCcC---hhhhhhhhhhhc
Confidence 5555555555443 2334555555555555555555544 34455555666666655555432 334455555555
Q ss_pred cCCcccccCCccccCCCCccEEECcCCCcCccccchhhcCCCCCCEEecccccCCcccchhhhCCCCCCCCCCccEEEcc
Q 037325 272 GSNDLQGDIPDGFASLNSLQELDLSGNSFLGGQLSRNLGKLCNLRTMILSRNNISSEVSDFLDGLSECTNSILLEKLELR 351 (598)
Q Consensus 272 ~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~~~~~~~L~~L~Ls 351 (598)
++|.+++ +...++|+.|++++|.+ .. ++..+ .++|+.|++++|.+++. ..+..++ +|++|+++
T Consensus 200 ~~n~l~~-----l~~~~~L~~L~ls~n~l-~~-~~~~~--~~~L~~L~L~~n~l~~~--~~l~~l~------~L~~L~Ls 262 (597)
T 3oja_B 200 SYNLLST-----LAIPIAVEELDASHNSI-NV-VRGPV--NVELTILKLQHNNLTDT--AWLLNYP------GLVEVDLS 262 (597)
T ss_dssp CSSCCSE-----EECCTTCSEEECCSSCC-CE-EECSC--CSCCCEEECCSSCCCCC--GGGGGCT------TCSEEECC
T ss_pred ccCcccc-----ccCCchhheeeccCCcc-cc-ccccc--CCCCCEEECCCCCCCCC--hhhccCC------CCCEEECC
Confidence 5555542 22334555566665552 21 12111 24555666666555542 3334444 56666666
Q ss_pred CccccccCccccCCCCCCCEEEccCCcCCccchhhccCCCCCCEEeCcCCcCCcccCCCchhhhcCCCCCCEEEccCccC
Q 037325 352 FNQFTGILPISLGSLKNLRHLVLWQNSFLGSIPPSIGNLTLLKELYLASNQMNGQKISDSYQHLKNQTELRTLVLNKARI 431 (598)
Q Consensus 352 ~n~l~~~~~~~l~~l~~L~~L~ls~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~~~~L~~L~l~~n~l 431 (598)
+|.+.+..|..+..+++|+.|++++|.+++ +|..+..+++|+.|++++|.++.. |. .+..+++|+.|++++|.+
T Consensus 263 ~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~-l~~~~~~l~~L~~L~Ls~N~l~~i--~~---~~~~l~~L~~L~L~~N~l 336 (597)
T 3oja_B 263 YNELEKIMYHPFVKMQRLERLYISNNRLVA-LNLYGQPIPTLKVLDLSHNHLLHV--ER---NQPQFDRLENLYLDHNSI 336 (597)
T ss_dssp SSCCCEEESGGGTTCSSCCEEECTTSCCCE-EECSSSCCTTCCEEECCSSCCCCC--GG---GHHHHTTCSEEECCSSCC
T ss_pred CCccCCCCHHHhcCccCCCEEECCCCCCCC-CCcccccCCCCcEEECCCCCCCcc--Cc---ccccCCCCCEEECCCCCC
Confidence 666655555555556666666666665553 344445555666666666655532 21 234455566666666665
Q ss_pred ccccchHHHhcCCCCCEEEccCCcCcc
Q 037325 432 SDTISDWFWQLSLTLDELDVAYNELRG 458 (598)
Q Consensus 432 ~~~~~~~~~~~~~~L~~L~ls~n~~~~ 458 (598)
++.... .++.|+.|++++|.+.+
T Consensus 337 ~~~~~~----~~~~L~~L~l~~N~~~~ 359 (597)
T 3oja_B 337 VTLKLS----THHTLKNLTLSHNDWDC 359 (597)
T ss_dssp CCCCCC----TTCCCSEEECCSSCEEH
T ss_pred CCcChh----hcCCCCEEEeeCCCCCC
Confidence 544211 24556666666665544
|
| >4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} | Back alignment and structure |
|---|
Probab=100.00 E-value=5.3e-31 Score=265.51 Aligned_cols=306 Identities=25% Similarity=0.321 Sum_probs=165.7
Q ss_pred ccCCCCCCEEeCCCCCCCCCCcchhccCCCCCCEEECcCCCCCcccchhccCCCCCCEEEccCCCCCCCccChhhhcCCC
Q 037325 109 LLQLKDLEYLDLSMNNFTGFQVPEFIGSLKELRYLNLSGSFFSGTIPQTLGNLSNLLYLDLNNFLDQSNQIDLEWLSGLS 188 (598)
Q Consensus 109 l~~l~~L~~L~Ls~n~l~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~~l~ 188 (598)
+..+++|++|+++++.+.. ++. +..+++|++|++++|.+++ ++. +..+++|++|++++|.+... ..+.+++
T Consensus 40 ~~~l~~L~~L~l~~~~i~~--~~~-~~~~~~L~~L~l~~n~i~~-~~~-~~~l~~L~~L~L~~n~i~~~----~~~~~l~ 110 (347)
T 4fmz_A 40 QEELESITKLVVAGEKVAS--IQG-IEYLTNLEYLNLNGNQITD-ISP-LSNLVKLTNLYIGTNKITDI----SALQNLT 110 (347)
T ss_dssp HHHHTTCSEEECCSSCCCC--CTT-GGGCTTCCEEECCSSCCCC-CGG-GTTCTTCCEEECCSSCCCCC----GGGTTCT
T ss_pred chhcccccEEEEeCCcccc--chh-hhhcCCccEEEccCCcccc-chh-hhcCCcCCEEEccCCcccCc----hHHcCCC
Confidence 3456677777777777663 333 5667777777777777763 343 66777777777776654432 2356666
Q ss_pred CCcEEEcCCCCCCCCcccchHhhhcCCCCCEEEcCCCCCCCCCCCCCcCCCCCccEEEccCCCCCCCcchhhhcCCCCCE
Q 037325 189 SLVYFNLGGADLSKAGAYWLEVFNKLHSFVELHLPNCNLPSLPLSFPSLNFASLQVLDLSNNDFNSTTPHWLFNITSLLC 268 (598)
Q Consensus 189 ~L~~L~l~~n~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~ 268 (598)
+|++|++++|.+.+.. .+..+++|++|++++|....... .+..+++|++|++++|.+.+..+ +..+++|+.
T Consensus 111 ~L~~L~l~~n~i~~~~-----~~~~l~~L~~L~l~~n~~~~~~~--~~~~l~~L~~L~l~~~~~~~~~~--~~~l~~L~~ 181 (347)
T 4fmz_A 111 NLRELYLNEDNISDIS-----PLANLTKMYSLNLGANHNLSDLS--PLSNMTGLNYLTVTESKVKDVTP--IANLTDLYS 181 (347)
T ss_dssp TCSEEECTTSCCCCCG-----GGTTCTTCCEEECTTCTTCCCCG--GGTTCTTCCEEECCSSCCCCCGG--GGGCTTCSE
T ss_pred cCCEEECcCCcccCch-----hhccCCceeEEECCCCCCccccc--chhhCCCCcEEEecCCCcCCchh--hccCCCCCE
Confidence 6666666666665542 15566666666666664333322 24455666666666666554333 555666666
Q ss_pred EEccCCcccccCCccccCCCCccEEECcCCCcCccccchhhcCCCCCCEEecccccCCcccchhhhCCCCCCCCCCccEE
Q 037325 269 LDLGSNDLQGDIPDGFASLNSLQELDLSGNSFLGGQLSRNLGKLCNLRTMILSRNNISSEVSDFLDGLSECTNSILLEKL 348 (598)
Q Consensus 269 L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~~~~~~~L~~L 348 (598)
|++++|.+.+. +. +..+++|+.|++++|. +.+..+ +..+++|++|++++|.+++..+ +..++ +|++|
T Consensus 182 L~l~~n~l~~~-~~-~~~l~~L~~L~l~~n~-l~~~~~--~~~~~~L~~L~l~~n~l~~~~~--~~~l~------~L~~L 248 (347)
T 4fmz_A 182 LSLNYNQIEDI-SP-LASLTSLHYFTAYVNQ-ITDITP--VANMTRLNSLKIGNNKITDLSP--LANLS------QLTWL 248 (347)
T ss_dssp EECTTSCCCCC-GG-GGGCTTCCEEECCSSC-CCCCGG--GGGCTTCCEEECCSSCCCCCGG--GTTCT------TCCEE
T ss_pred EEccCCccccc-cc-ccCCCccceeecccCC-CCCCch--hhcCCcCCEEEccCCccCCCcc--hhcCC------CCCEE
Confidence 66666655532 22 4555566666666665 222222 4555555555555555554333 33333 55555
Q ss_pred EccCccccccCccccCCCCCCCEEEccCCcCCccchhhccCCCCCCEEeCcCCcCCcccCCCchhhhcCCCCCCEEEccC
Q 037325 349 ELRFNQFTGILPISLGSLKNLRHLVLWQNSFLGSIPPSIGNLTLLKELYLASNQMNGQKISDSYQHLKNQTELRTLVLNK 428 (598)
Q Consensus 349 ~Ls~n~l~~~~~~~l~~l~~L~~L~ls~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~~~~L~~L~l~~ 428 (598)
++++|.+++. ..+..+++|++|++++|++++. ..+..+++|++|++++|.+++.. + ..+..+++|+.|++++
T Consensus 249 ~l~~n~l~~~--~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~L~~n~l~~~~-~---~~l~~l~~L~~L~L~~ 320 (347)
T 4fmz_A 249 EIGTNQISDI--NAVKDLTKLKMLNVGSNQISDI--SVLNNLSQLNSLFLNNNQLGNED-M---EVIGGLTNLTTLFLSQ 320 (347)
T ss_dssp ECCSSCCCCC--GGGTTCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCGGG-H---HHHHTCTTCSEEECCS
T ss_pred ECCCCccCCC--hhHhcCCCcCEEEccCCccCCC--hhhcCCCCCCEEECcCCcCCCcC-h---hHhhccccCCEEEccC
Confidence 5555555532 2345555555555555555532 23455555555555555554332 1 2344455555555555
Q ss_pred ccCccccchHHHhcCCCCCEEEccCCcC
Q 037325 429 ARISDTISDWFWQLSLTLDELDVAYNEL 456 (598)
Q Consensus 429 n~l~~~~~~~~~~~~~~L~~L~ls~n~~ 456 (598)
|++++..| + ..+++|++|++++|.+
T Consensus 321 n~l~~~~~--~-~~l~~L~~L~l~~N~i 345 (347)
T 4fmz_A 321 NHITDIRP--L-ASLSKMDSADFANQVI 345 (347)
T ss_dssp SSCCCCGG--G-GGCTTCSEESSSCC--
T ss_pred CccccccC--h-hhhhccceeehhhhcc
Confidence 55554444 1 1245555555555554
|
| >3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.8e-32 Score=292.75 Aligned_cols=309 Identities=22% Similarity=0.239 Sum_probs=174.9
Q ss_pred CCCCCEEEcCCCCCCCCCCCCCcCCCCCccEEEccCCCCCCCcchhhhcCCCCCEEEccCCcccccCCccccCCCCccEE
Q 037325 214 LHSFVELHLPNCNLPSLPLSFPSLNFASLQVLDLSNNDFNSTTPHWLFNITSLLCLDLGSNDLQGDIPDGFASLNSLQEL 293 (598)
Q Consensus 214 l~~L~~L~l~~~~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L 293 (598)
+++++.++++++.+..++. ..+..+++|++|++++|.+++..+..+..+++|++|++++|.+++..|..|+.+++|++|
T Consensus 50 l~~l~~l~l~~~~l~~lp~-~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 128 (597)
T 3oja_B 50 LNNQKIVTFKNSTMRKLPA-ALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVL 128 (597)
T ss_dssp GCCCSEEEESSCEESEECT-HHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred CCCceEEEeeCCCCCCcCH-HHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEE
Confidence 4566777777776666655 445556667777777776666655566666677777777766666555556666667777
Q ss_pred ECcCCCcCccccchhhcCCCCCCEEecccccCCcccchhhhCCCCCCCCCCccEEEccCccccccCccccCCCCCCCEEE
Q 037325 294 DLSGNSFLGGQLSRNLGKLCNLRTMILSRNNISSEVSDFLDGLSECTNSILLEKLELRFNQFTGILPISLGSLKNLRHLV 373 (598)
Q Consensus 294 ~l~~n~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~ 373 (598)
++++|. +....+..|+.+++|++|++++|.+.+..+..+..++ +|++|++++|.+++.. ++.+++|+.|+
T Consensus 129 ~L~~n~-l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~------~L~~L~L~~N~l~~~~---~~~l~~L~~L~ 198 (597)
T 3oja_B 129 VLERND-LSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATT------SLQNLQLSSNRLTHVD---LSLIPSLFHAN 198 (597)
T ss_dssp ECCSSC-CCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCT------TCCEEECTTSCCSBCC---GGGCTTCSEEE
T ss_pred EeeCCC-CCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCC------cCcEEECcCCCCCCcC---hhhhhhhhhhh
Confidence 776666 3433334456666666666666666666665555555 5666666666665432 34456666666
Q ss_pred ccCCcCCccchhhccCCCCCCEEeCcCCcCCcccCCCchhhhcCCCCCCEEEccCccCccccchHHHhcCCCCCEEEccC
Q 037325 374 LWQNSFLGSIPPSIGNLTLLKELYLASNQMNGQKISDSYQHLKNQTELRTLVLNKARISDTISDWFWQLSLTLDELDVAY 453 (598)
Q Consensus 374 ls~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~ls~ 453 (598)
+++|.+.+ +...++|+.|++++|.++... . ...++|+.|++++|.+++. ..+.. ++.|++|++++
T Consensus 199 l~~n~l~~-----l~~~~~L~~L~ls~n~l~~~~-~------~~~~~L~~L~L~~n~l~~~--~~l~~-l~~L~~L~Ls~ 263 (597)
T 3oja_B 199 VSYNLLST-----LAIPIAVEELDASHNSINVVR-G------PVNVELTILKLQHNNLTDT--AWLLN-YPGLVEVDLSY 263 (597)
T ss_dssp CCSSCCSE-----EECCTTCSEEECCSSCCCEEE-C------SCCSCCCEEECCSSCCCCC--GGGGG-CTTCSEEECCS
T ss_pred cccCcccc-----ccCCchhheeeccCCcccccc-c------ccCCCCCEEECCCCCCCCC--hhhcc-CCCCCEEECCC
Confidence 66665553 223345666666666665443 1 1124566666666666553 22322 55666666666
Q ss_pred CcCcccCCCCcccCCCCEEEcccCcCcccCCCCCcCCcEEEccCCcccccCCchhhcccCCCCCccccCCCCeEeCcCCc
Q 037325 454 NELRGRVPNSLGFNFPAKVDLSFNNFEGRLLLWSFNVTKLYLRDNSFSGLIPNDIGQNLPFLTDLGNLKQLITLVISNNN 533 (598)
Q Consensus 454 n~~~~~~p~~~~~~~L~~l~ls~n~l~~~~~~~~~~L~~L~ls~n~l~~~~p~~~~~~~~~~~~~~~l~~L~~L~Ls~N~ 533 (598)
|.+++..|..+... ++|+.|+|++|++++ +|..+.. +++|+.|+|++|.
T Consensus 264 N~l~~~~~~~~~~l--------------------~~L~~L~Ls~N~l~~-l~~~~~~----------l~~L~~L~Ls~N~ 312 (597)
T 3oja_B 264 NELEKIMYHPFVKM--------------------QRLERLYISNNRLVA-LNLYGQP----------IPTLKVLDLSHNH 312 (597)
T ss_dssp SCCCEEESGGGTTC--------------------SSCCEEECTTSCCCE-EECSSSC----------CTTCCEEECCSSC
T ss_pred CccCCCCHHHhcCc--------------------cCCCEEECCCCCCCC-CCccccc----------CCCCcEEECCCCC
Confidence 66665555554433 344455555554442 2322222 4455555555555
Q ss_pred cccccchhccCCCCCCEEECCCCcCccccchhccCCCCCCEEEccCCCCc
Q 037325 534 LSGEIPLLFSNISFLYILDMSNNSLSGSTPESIGSLRTVKFLVLRNNYLS 583 (598)
Q Consensus 534 l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~l~~l~~L~~L~l~~n~l~ 583 (598)
++ .+|..++.+++|++|+|++|.+++. | +..+++|+.|++++|+++
T Consensus 313 l~-~i~~~~~~l~~L~~L~L~~N~l~~~-~--~~~~~~L~~L~l~~N~~~ 358 (597)
T 3oja_B 313 LL-HVERNQPQFDRLENLYLDHNSIVTL-K--LSTHHTLKNLTLSHNDWD 358 (597)
T ss_dssp CC-CCGGGHHHHTTCSEEECCSSCCCCC-C--CCTTCCCSEEECCSSCEE
T ss_pred CC-ccCcccccCCCCCEEECCCCCCCCc-C--hhhcCCCCEEEeeCCCCC
Confidence 54 4444445555555555555555432 2 344445555555555544
|
| >1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-34 Score=303.95 Aligned_cols=320 Identities=20% Similarity=0.167 Sum_probs=206.3
Q ss_pred CccEEEccCCCCCC----CcchhhhcCCCCCEEEccCCcccccCCccc-----cCCCCccEEECcCCCcCcc----ccch
Q 037325 241 SLQVLDLSNNDFNS----TTPHWLFNITSLLCLDLGSNDLQGDIPDGF-----ASLNSLQELDLSGNSFLGG----QLSR 307 (598)
Q Consensus 241 ~L~~L~L~~n~l~~----~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l-----~~l~~L~~L~l~~n~~~~~----~~~~ 307 (598)
+|++|++++|+++. .++..+..+++|++|++++|.+++..+..+ ...++|++|++++|. +.. .++.
T Consensus 86 ~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~-l~~~~~~~l~~ 164 (461)
T 1z7x_W 86 KIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCS-LSAASCEPLAS 164 (461)
T ss_dssp CCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSC-CBGGGHHHHHH
T ss_pred ceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCC-CCHHHHHHHHH
Confidence 56666666666653 346666677777777777777664333322 224567777777777 333 2355
Q ss_pred hhcCCCCCCEEecccccCCcccchhhhC-----CCCCCCCCCccEEEccCcccccc----CccccCCCCCCCEEEccCCc
Q 037325 308 NLGKLCNLRTMILSRNNISSEVSDFLDG-----LSECTNSILLEKLELRFNQFTGI----LPISLGSLKNLRHLVLWQNS 378 (598)
Q Consensus 308 ~l~~l~~L~~L~l~~n~l~~~~~~~~~~-----l~~~~~~~~L~~L~Ls~n~l~~~----~~~~l~~l~~L~~L~ls~n~ 378 (598)
.+..+++|++|++++|.+.+..+..+.. .+ +|++|++++|.+++. ++..+..+++|++|++++|+
T Consensus 165 ~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~------~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~ 238 (461)
T 1z7x_W 165 VLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPC------QLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNK 238 (461)
T ss_dssp HHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCC------CCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSB
T ss_pred HHhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCC------CceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCc
Confidence 5666777888888877776654443332 22 677888888877653 35556667778888888887
Q ss_pred CCccc-----hhhccCCCCCCEEeCcCCcCCcccCCCchhhhcCCCCCCEEEccCccCccccchHHHhc----CCCCCEE
Q 037325 379 FLGSI-----PPSIGNLTLLKELYLASNQMNGQKISDSYQHLKNQTELRTLVLNKARISDTISDWFWQL----SLTLDEL 449 (598)
Q Consensus 379 l~~~~-----~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~----~~~L~~L 449 (598)
+.+.. +.....+++|++|++++|.+++.........+..+++|+.|++++|++++..+..+... .++|++|
T Consensus 239 l~~~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L 318 (461)
T 1z7x_W 239 LGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESL 318 (461)
T ss_dssp CHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEE
T ss_pred CChHHHHHHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCCCchHHHHHHHHHhccCCccceee
Confidence 76532 12223567788888888877654211112345567778888888887766555444432 2466777
Q ss_pred EccCCcCcccCCCCcccCCCCEEEcccCcCcccCCCCCcCCcEEEccCCcccccCCchhhcccCCCCCc-cccCCCCeEe
Q 037325 450 DVAYNELRGRVPNSLGFNFPAKVDLSFNNFEGRLLLWSFNVTKLYLRDNSFSGLIPNDIGQNLPFLTDL-GNLKQLITLV 528 (598)
Q Consensus 450 ~ls~n~~~~~~p~~~~~~~L~~l~ls~n~l~~~~~~~~~~L~~L~ls~n~l~~~~p~~~~~~~~~~~~~-~~l~~L~~L~ 528 (598)
++++|.+++.....+. .....+++|++||+++|++++..+..+... + ...++|+.|+
T Consensus 319 ~L~~n~l~~~~~~~l~----------------~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~------l~~~~~~L~~L~ 376 (461)
T 1z7x_W 319 WVKSCSFTAACCSHFS----------------SVLAQNRFLLELQISNNRLEDAGVRELCQG------LGQPGSVLRVLW 376 (461)
T ss_dssp ECTTSCCBGGGHHHHH----------------HHHHHCSSCCEEECCSSBCHHHHHHHHHHH------HTSTTCCCCEEE
T ss_pred EcCCCCCchHHHHHHH----------------HHHhhCCCccEEEccCCccccccHHHHHHH------HcCCCCceEEEE
Confidence 7776666532111000 000124689999999999987766655431 1 1146899999
Q ss_pred CcCCcccc----ccchhccCCCCCCEEECCCCcCccccchhcc-----CCCCCCEEEccCCCCcccCCcC
Q 037325 529 ISNNNLSG----EIPLLFSNISFLYILDMSNNSLSGSTPESIG-----SLRTVKFLVLRNNYLSGKLPLS 589 (598)
Q Consensus 529 Ls~N~l~~----~~p~~~~~l~~L~~L~ls~N~l~~~~p~~l~-----~l~~L~~L~l~~n~l~g~~P~~ 589 (598)
+++|.+++ .+|..+.++++|++|++++|++++.-...+. ..++|+.|++.++.+....++.
T Consensus 377 L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~N~i~~~~~~~l~~~l~~~~~~L~~L~~~~~~~~~~~~~~ 446 (461)
T 1z7x_W 377 LADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGCLLEQLVLYDIYWSEEMEDR 446 (461)
T ss_dssp CTTSCCCHHHHHHHHHHHHHCCCCCEEECCSSSCCHHHHHHHHHHHTSTTCCCCEEECTTCCCCHHHHHH
T ss_pred CCCCCCChhhHHHHHHHHHhCCCccEEECCCCCCCHHHHHHHHHHhccCCcchhheeecccccCHHHHHH
Confidence 99999997 7899999999999999999999865333332 2457999999988877655443
|
| >4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} | Back alignment and structure |
|---|
Probab=99.97 E-value=1.1e-32 Score=274.49 Aligned_cols=268 Identities=18% Similarity=0.224 Sum_probs=175.4
Q ss_pred CCCCHHHHHHHHHHHhcC-CCCCCCCCCCC-----CCCCCCcccEEecC--------CCCcEEEEEcCCCCCCCCCCccc
Q 037325 30 SGCQEAERKALLQFKQSL-RDPSGQLSSWV-----GEDCCSWSGVSCNN--------RTASVIKLNLNNPFRDSFGSFED 95 (598)
Q Consensus 30 ~~~~~~~~~~l~~~~~~~-~~~~~~~~~W~-----~~~~c~w~gv~c~~--------~~~~v~~L~L~~~~~~~~~~~~~ 95 (598)
..+..+|++||++||+.+ .++.++...|. ..++|.|.|+.|.. ...+|+.|+|++
T Consensus 22 ~~~~~~~~~aLl~~k~~~~~~~~~~~~~w~~~~~~~~~~~~~~g~~~~~~~~~l~~~~~~~l~~L~L~~----------- 90 (328)
T 4fcg_A 22 STALRPYHDVLSQWQRHYNADRNRWHSAWRQANSNNPQIETRTGRALKATADLLEDATQPGRVALELRS----------- 90 (328)
T ss_dssp -CCCCCHHHHHHHHHHHHHHCCTTHHHHHHHHTTTCTTSCCSHHHHHHHHHHHHHHHTSTTCCEEEEES-----------
T ss_pred cccCchHHHHHHHHHHhccCCchhhhhhhcccccccccccccCCcchhhhHHHHhcccccceeEEEccC-----------
Confidence 356778999999999988 57766677882 56889999999952 346899999988
Q ss_pred CCCCCcceecCccccCCCCCCEEeCCCCCCCCCCcchhccCCCCCCEEECcCCCCCcccchhccCCCCCCEEEccCCCCC
Q 037325 96 DAGHELGGEISPSLLQLKDLEYLDLSMNNFTGFQVPEFIGSLKELRYLNLSGSFFSGTIPQTLGNLSNLLYLDLNNFLDQ 175 (598)
Q Consensus 96 ~~~~~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~~~ 175 (598)
+++. .+|..+.++++|++|+|++|.++ .+|..+.++++|++|++++|.++ .+|..++.+++|++|++++|...
T Consensus 91 ---n~l~-~lp~~l~~l~~L~~L~L~~n~l~--~lp~~~~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L~L~~n~~~ 163 (328)
T 4fcg_A 91 ---VPLP-QFPDQAFRLSHLQHMTIDAAGLM--ELPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLRELSIRACPEL 163 (328)
T ss_dssp ---SCCS-SCCSCGGGGTTCSEEEEESSCCC--CCCSCGGGGTTCSEEEEESCCCC-CCCGGGGGCTTCCEEEEEEETTC
T ss_pred ---CCch-hcChhhhhCCCCCEEECCCCCcc--chhHHHhccCCCCEEECCCCccc-cCcHHHhcCcCCCEEECCCCCCc
Confidence 6776 77888889999999999999998 48888999999999999999999 88999999999999999987653
Q ss_pred CCccC-h------hhhcCCCCCcEEEcCCCCCCCCcccchHhhhcCCCCCEEEcCCCCCCCCCCCCCcCCCCCccEEEcc
Q 037325 176 SNQID-L------EWLSGLSSLVYFNLGGADLSKAGAYWLEVFNKLHSFVELHLPNCNLPSLPLSFPSLNFASLQVLDLS 248 (598)
Q Consensus 176 ~~~~~-~------~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~L~~L~L~ 248 (598)
..... . ..+.++++|++|++++|.++.. +..+..+++|++|++++|.+++++. .+..+++|++|+++
T Consensus 164 ~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~l----p~~l~~l~~L~~L~L~~N~l~~l~~--~l~~l~~L~~L~Ls 237 (328)
T 4fcg_A 164 TELPEPLASTDASGEHQGLVNLQSLRLEWTGIRSL----PASIANLQNLKSLKIRNSPLSALGP--AIHHLPKLEELDLR 237 (328)
T ss_dssp CCCCSCSEEEC-CCCEEESTTCCEEEEEEECCCCC----CGGGGGCTTCCEEEEESSCCCCCCG--GGGGCTTCCEEECT
T ss_pred cccChhHhhccchhhhccCCCCCEEECcCCCcCcc----hHhhcCCCCCCEEEccCCCCCcCch--hhccCCCCCEEECc
Confidence 32211 1 1123355566666665555532 3345555555555555555554433 23444555555555
Q ss_pred CCCCCCCcchhhhcCCCCCEEEccCCcccccCCccccCCCCccEEECcCCCcCccccchhhcCCCCCCEEeccc
Q 037325 249 NNDFNSTTPHWLFNITSLLCLDLGSNDLQGDIPDGFASLNSLQELDLSGNSFLGGQLSRNLGKLCNLRTMILSR 322 (598)
Q Consensus 249 ~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~l~~l~~L~~L~l~~ 322 (598)
+|.+.+.+|..+..+++|++|++++|.+.+.+|..+..+++|++|++++|+ ..+.+|..++.+++|+.+++..
T Consensus 238 ~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~-~~~~iP~~l~~L~~L~~l~l~~ 310 (328)
T 4fcg_A 238 GCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCV-NLSRLPSLIAQLPANCIILVPP 310 (328)
T ss_dssp TCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCT-TCCCCCGGGGGSCTTCEEECCG
T ss_pred CCcchhhhHHHhcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCC-chhhccHHHhhccCceEEeCCH
Confidence 555554455445555555555555554444444444445555555555544 3344444455555555444443
|
| >1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 | Back alignment and structure |
|---|
Probab=99.97 E-value=4e-32 Score=268.83 Aligned_cols=253 Identities=26% Similarity=0.395 Sum_probs=175.4
Q ss_pred CCccEEECcCCCcCcc--ccchhhcCCCCCCEEeccc-ccCCcccchhhhCCCCCCCCCCccEEEccCccccccCccccC
Q 037325 288 NSLQELDLSGNSFLGG--QLSRNLGKLCNLRTMILSR-NNISSEVSDFLDGLSECTNSILLEKLELRFNQFTGILPISLG 364 (598)
Q Consensus 288 ~~L~~L~l~~n~~~~~--~~~~~l~~l~~L~~L~l~~-n~l~~~~~~~~~~l~~~~~~~~L~~L~Ls~n~l~~~~~~~l~ 364 (598)
.+++.|++++|. +.+ .+|..+..+++|++|++++ |.+.+..|..+..++ +|++|++++|.+++.+|..+.
T Consensus 50 ~~l~~L~L~~~~-l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~------~L~~L~Ls~n~l~~~~p~~~~ 122 (313)
T 1ogq_A 50 YRVNNLDLSGLN-LPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLT------QLHYLYITHTNVSGAIPDFLS 122 (313)
T ss_dssp CCEEEEEEECCC-CSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCT------TCSEEEEEEECCEEECCGGGG
T ss_pred ceEEEEECCCCC-ccCCcccChhHhCCCCCCeeeCCCCCcccccCChhHhcCC------CCCEEECcCCeeCCcCCHHHh
Confidence 356677777776 444 5666666677777777763 666666666666655 666666666666666666666
Q ss_pred CCCCCCEEEccCCcCCccchhhccCCCCCCEEeCcCCcCCcccCCCchhhhcCCC-CCCEEEccCccCccccchHHHhcC
Q 037325 365 SLKNLRHLVLWQNSFLGSIPPSIGNLTLLKELYLASNQMNGQKISDSYQHLKNQT-ELRTLVLNKARISDTISDWFWQLS 443 (598)
Q Consensus 365 ~l~~L~~L~ls~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~~~-~L~~L~l~~n~l~~~~~~~~~~~~ 443 (598)
.+++|++|++++|.+.+.+|..+..+++|++|++++|.+++.. |. .+..++ .|+.|++++|++++.+|..+.. +
T Consensus 123 ~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~-p~---~l~~l~~~L~~L~L~~N~l~~~~~~~~~~-l 197 (313)
T 1ogq_A 123 QIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAI-PD---SYGSFSKLFTSMTISRNRLTGKIPPTFAN-L 197 (313)
T ss_dssp GCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEEC-CG---GGGCCCTTCCEEECCSSEEEEECCGGGGG-C
T ss_pred CCCCCCEEeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcC-CH---HHhhhhhcCcEEECcCCeeeccCChHHhC-C
Confidence 6666666666666666666666666666666666666665544 32 234444 5555555555555555554443 2
Q ss_pred CCCCEEEccCCcCcccCCCCcccCCCCEEEcccCcCcccCCCCCcCCcEEEccCCcccccCCchhhcccCCCCCccccCC
Q 037325 444 LTLDELDVAYNELRGRVPNSLGFNFPAKVDLSFNNFEGRLLLWSFNVTKLYLRDNSFSGLIPNDIGQNLPFLTDLGNLKQ 523 (598)
Q Consensus 444 ~~L~~L~ls~n~~~~~~p~~~~~~~L~~l~ls~n~l~~~~~~~~~~L~~L~ls~n~l~~~~p~~~~~~~~~~~~~~~l~~ 523 (598)
+ |++|++++|.+++..|..+. .+++|+.|++++|++++.+|. +.. +++
T Consensus 198 ~-L~~L~Ls~N~l~~~~~~~~~--------------------~l~~L~~L~L~~N~l~~~~~~-~~~----------l~~ 245 (313)
T 1ogq_A 198 N-LAFVDLSRNMLEGDASVLFG--------------------SDKNTQKIHLAKNSLAFDLGK-VGL----------SKN 245 (313)
T ss_dssp C-CSEEECCSSEEEECCGGGCC--------------------TTSCCSEEECCSSEECCBGGG-CCC----------CTT
T ss_pred c-ccEEECcCCcccCcCCHHHh--------------------cCCCCCEEECCCCceeeecCc-ccc----------cCC
Confidence 2 55555555555544333222 256788899999988866654 444 789
Q ss_pred CCeEeCcCCccccccchhccCCCCCCEEECCCCcCccccchhccCCCCCCEEEccCCC-Cccc
Q 037325 524 LITLVISNNNLSGEIPLLFSNISFLYILDMSNNSLSGSTPESIGSLRTVKFLVLRNNY-LSGK 585 (598)
Q Consensus 524 L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~l~~l~~L~~L~l~~n~-l~g~ 585 (598)
|++|++++|.+++.+|..+.++++|++|++++|+++|.+|.. ..+++|+.+++++|+ ++|.
T Consensus 246 L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~-~~l~~L~~l~l~~N~~lc~~ 307 (313)
T 1ogq_A 246 LNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQG-GNLQRFDVSAYANNKCLCGS 307 (313)
T ss_dssp CCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCCS-TTGGGSCGGGTCSSSEEEST
T ss_pred CCEEECcCCcccCcCChHHhcCcCCCEEECcCCcccccCCCC-ccccccChHHhcCCCCccCC
Confidence 999999999999999999999999999999999999999987 889999999999998 7763
|
| >1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I | Back alignment and structure |
|---|
Probab=99.97 E-value=3.7e-33 Score=292.80 Aligned_cols=374 Identities=19% Similarity=0.117 Sum_probs=198.6
Q ss_pred ccCCCCCCEEeCCCCCCCCC---CcchhccCCCCCCEEECcCCCCCcccchhc-cCCC----CCCEEEccCCCCCCCccC
Q 037325 109 LLQLKDLEYLDLSMNNFTGF---QVPEFIGSLKELRYLNLSGSFFSGTIPQTL-GNLS----NLLYLDLNNFLDQSNQID 180 (598)
Q Consensus 109 l~~l~~L~~L~Ls~n~l~~~---~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l-~~l~----~L~~L~L~~n~~~~~~~~ 180 (598)
+..+++|++|++++|.+++. .++..+..+++|++|++++|.+++..+..+ ..++ +|++|++++|
T Consensus 24 ~~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~L~~n-------- 95 (461)
T 1z7x_W 24 LPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNC-------- 95 (461)
T ss_dssp HHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCSTTCCCCEEECTTS--------
T ss_pred HhhcCCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHHHHHHHHhhCCCceeEEEccCC--------
Confidence 45556666666666655432 134445555666666666665553333222 2233 4555555554
Q ss_pred hhhhcCCCCCcEEEcCCCCCCCCc-ccchHhhhcCCCCCEEEcCCCCCCCCCCC----CCcCCCCCccEEEccCCCCCCC
Q 037325 181 LEWLSGLSSLVYFNLGGADLSKAG-AYWLEVFNKLHSFVELHLPNCNLPSLPLS----FPSLNFASLQVLDLSNNDFNST 255 (598)
Q Consensus 181 ~~~~~~l~~L~~L~l~~n~~~~~~-~~~~~~~~~l~~L~~L~l~~~~l~~~~~~----~~~~~l~~L~~L~L~~n~l~~~ 255 (598)
.+++.. ..++..+..+++|++|++++|.+++.... ......++|++|++++|++++.
T Consensus 96 ------------------~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~ 157 (461)
T 1z7x_W 96 ------------------CLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAA 157 (461)
T ss_dssp ------------------CCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGG
T ss_pred ------------------CCCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHH
Confidence 443221 11133344444444444444444321110 0011234677777777766653
Q ss_pred c----chhhhcCCCCCEEEccCCcccccCCcccc-----CCCCccEEECcCCCcCccc----cchhhcCCCCCCEEeccc
Q 037325 256 T----PHWLFNITSLLCLDLGSNDLQGDIPDGFA-----SLNSLQELDLSGNSFLGGQ----LSRNLGKLCNLRTMILSR 322 (598)
Q Consensus 256 ~----~~~l~~l~~L~~L~l~~n~l~~~~~~~l~-----~l~~L~~L~l~~n~~~~~~----~~~~l~~l~~L~~L~l~~ 322 (598)
. +..+..+++|++|++++|.+.+..+..+. ..++|++|++++|.+ ... ++..+..+++|++|++++
T Consensus 158 ~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l-~~~~~~~l~~~l~~~~~L~~L~Ls~ 236 (461)
T 1z7x_W 158 SCEPLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGV-TSDNCRDLCGIVASKASLRELALGS 236 (461)
T ss_dssp GHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCC-BTTHHHHHHHHHHHCTTCCEEECCS
T ss_pred HHHHHHHHHhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCC-cHHHHHHHHHHHHhCCCccEEeccC
Confidence 3 44556667777777777776644333332 245777777777773 332 455666777777777777
Q ss_pred ccCCcccchhhh-----CCCCCCCCCCccEEEccCcccccc----CccccCCCCCCCEEEccCCcCCccchhhcc-----
Q 037325 323 NNISSEVSDFLD-----GLSECTNSILLEKLELRFNQFTGI----LPISLGSLKNLRHLVLWQNSFLGSIPPSIG----- 388 (598)
Q Consensus 323 n~l~~~~~~~~~-----~l~~~~~~~~L~~L~Ls~n~l~~~----~~~~l~~l~~L~~L~ls~n~l~~~~~~~l~----- 388 (598)
|.+.+.....+. ..+ +|++|++++|.+++. ++..+..+++|++|++++|.+.+..+..+.
T Consensus 237 n~l~~~~~~~l~~~~~~~~~------~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~ 310 (461)
T 1z7x_W 237 NKLGDVGMAELCPGLLHPSS------RLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLE 310 (461)
T ss_dssp SBCHHHHHHHHHHHHTSTTC------CCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTS
T ss_pred CcCChHHHHHHHHHHhcCCC------CceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCCCchHHHHHHHHHhcc
Confidence 776654322221 233 677777777777643 455555667777777777776654333332
Q ss_pred CCCCCCEEeCcCCcCCcccCCCchhhhcCCCCCCEEEccCccCccccchHHHhc----CCCCCEEEccCCcCcc----cC
Q 037325 389 NLTLLKELYLASNQMNGQKISDSYQHLKNQTELRTLVLNKARISDTISDWFWQL----SLTLDELDVAYNELRG----RV 460 (598)
Q Consensus 389 ~l~~L~~L~l~~n~l~~~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~----~~~L~~L~ls~n~~~~----~~ 460 (598)
..++|++|++++|.+++.........+..+++|+.|++++|++++..+..+... .++|++|++++|++++ .+
T Consensus 311 ~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l 390 (461)
T 1z7x_W 311 PGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSL 390 (461)
T ss_dssp TTCCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHH
T ss_pred CCccceeeEcCCCCCchHHHHHHHHHHhhCCCccEEEccCCccccccHHHHHHHHcCCCCceEEEECCCCCCChhhHHHH
Confidence 225777777777776654311122345566777777777777766555444432 3456666666666553 22
Q ss_pred CCCcccCCCCEEEcccCcCcccCCCCCcCCcEEEccCCcccccCCchhhcccCCCCCccccCCCCeEeCcCCccccccch
Q 037325 461 PNSLGFNFPAKVDLSFNNFEGRLLLWSFNVTKLYLRDNSFSGLIPNDIGQNLPFLTDLGNLKQLITLVISNNNLSGEIPL 540 (598)
Q Consensus 461 p~~~~~~~L~~l~ls~n~l~~~~~~~~~~L~~L~ls~n~l~~~~p~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~ 540 (598)
|..+.. +++|++|++++|++++.....+... ++ .....|+.|++.++.+....++
T Consensus 391 ~~~l~~--------------------~~~L~~L~l~~N~i~~~~~~~l~~~---l~--~~~~~L~~L~~~~~~~~~~~~~ 445 (461)
T 1z7x_W 391 AATLLA--------------------NHSLRELDLSNNCLGDAGILQLVES---VR--QPGCLLEQLVLYDIYWSEEMED 445 (461)
T ss_dssp HHHHHH--------------------CCCCCEEECCSSSCCHHHHHHHHHH---HT--STTCCCCEEECTTCCCCHHHHH
T ss_pred HHHHHh--------------------CCCccEEECCCCCCCHHHHHHHHHH---hc--cCCcchhheeecccccCHHHHH
Confidence 322221 3466666666666654432222210 00 1123566777766666544443
|
| >3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* | Back alignment and structure |
|---|
Probab=99.97 E-value=1.1e-32 Score=298.68 Aligned_cols=414 Identities=14% Similarity=0.064 Sum_probs=239.0
Q ss_pred ecCccccCCCCCCEEeCCCCCCC---CCCcc------------hhccCCCCCCEEECcCCCCCcccchhccC-CC-CCCE
Q 037325 104 EISPSLLQLKDLEYLDLSMNNFT---GFQVP------------EFIGSLKELRYLNLSGSFFSGTIPQTLGN-LS-NLLY 166 (598)
Q Consensus 104 ~~~~~l~~l~~L~~L~Ls~n~l~---~~~~p------------~~~~~l~~L~~L~L~~n~l~~~~p~~l~~-l~-~L~~ 166 (598)
.++..+.++++|++|+++++... +. +| .....+++|++|+|++|.+++..+..+.. ++ +|++
T Consensus 64 ~~~~~~~~~~~L~~L~L~~~~~~~~~~~-~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~L~~ 142 (592)
T 3ogk_B 64 TPDRLSRRFPNLRSLKLKGKPRAAMFNL-IPENWGGYVTPWVTEISNNLRQLKSVHFRRMIVSDLDLDRLAKARADDLET 142 (592)
T ss_dssp CHHHHHHHCTTCSEEEEECSCGGGGGTC-SCTTSCCBCHHHHHHHHHHCTTCCEEEEESCBCCHHHHHHHHHHHGGGCCE
T ss_pred ChHHHHHhCCCCeEEEecCCcchhhccc-ccccccccchHHHHHHHhhCCCCCeEEeeccEecHHHHHHHHHhccccCcE
Confidence 34456678999999999875321 11 22 12236889999999999888776766665 34 4999
Q ss_pred EEccCCCCCCCccChhhhcCCCCCcEEEcCCCCCCCCccc-chHhhhcCCCCCEEEcCCCCCCCCCC---CCCcCCCCCc
Q 037325 167 LDLNNFLDQSNQIDLEWLSGLSSLVYFNLGGADLSKAGAY-WLEVFNKLHSFVELHLPNCNLPSLPL---SFPSLNFASL 242 (598)
Q Consensus 167 L~L~~n~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~-~~~~~~~l~~L~~L~l~~~~l~~~~~---~~~~~~l~~L 242 (598)
|++++|.............++++|++|++++|.+.+.... +......+++|++|++++|.+++... ...+.++++|
T Consensus 143 L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L 222 (592)
T 3ogk_B 143 LKLDKCSGFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSL 222 (592)
T ss_dssp EEEESCEEEEHHHHHHHHHHCTTCSEEECTTCEEECCCSHHHHHHHHHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTC
T ss_pred EECcCCCCcCHHHHHHHHhhCCCCCEEECccccccCcchhHHHHHHhcCCCccEEEeeccCCCccCHHHHHHHHhhCCCC
Confidence 9998875211112223345788888888888887665432 23455677888888888887764321 0123356777
Q ss_pred cEEEccCCCCCCCcchhhhcCCCCCEEEccCCccc---ccCCccccCCCCccEEECcCCCcCccccchhhcCCCCCCEEe
Q 037325 243 QVLDLSNNDFNSTTPHWLFNITSLLCLDLGSNDLQ---GDIPDGFASLNSLQELDLSGNSFLGGQLSRNLGKLCNLRTMI 319 (598)
Q Consensus 243 ~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~---~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~l~~l~~L~~L~ 319 (598)
++|++++|.+.+ ++..+.++++|+.|+++.+... +..+..+..+++|+.|++.++. ...+|..+..+++|++|+
T Consensus 223 ~~L~L~~~~~~~-l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~--~~~l~~~~~~~~~L~~L~ 299 (592)
T 3ogk_B 223 VSVKVGDFEILE-LVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMG--PNEMPILFPFAAQIRKLD 299 (592)
T ss_dssp CEEECSSCBGGG-GHHHHHHCTTCCEEEECBCCCCTTCTTSSSCCCCCTTCCEEEETTCC--TTTGGGGGGGGGGCCEEE
T ss_pred cEEeccCccHHH-HHHHHhhhhHHHhhcccccccccchHHHHHHhhccccccccCccccc--hhHHHHHHhhcCCCcEEe
Confidence 788887777664 5566777777777777653222 2233445666777777777643 355666666677777777
Q ss_pred cccccCCcccc-hhhhCCCCCCCCCCccEEEccCccccccCccccCCCCCCCEEEccC-----------CcCCccc-hhh
Q 037325 320 LSRNNISSEVS-DFLDGLSECTNSILLEKLELRFNQFTGILPISLGSLKNLRHLVLWQ-----------NSFLGSI-PPS 386 (598)
Q Consensus 320 l~~n~l~~~~~-~~~~~l~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~ls~-----------n~l~~~~-~~~ 386 (598)
+++|.+++... ..+..++ +|++|+++++-..+.++.....+++|++|++++ +.+++.. +..
T Consensus 300 Ls~~~l~~~~~~~~~~~~~------~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~L~~g~~~~~~~~~~~~~~~~~~~~l 373 (592)
T 3ogk_B 300 LLYALLETEDHCTLIQKCP------NLEVLETRNVIGDRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIAL 373 (592)
T ss_dssp ETTCCCCHHHHHHHHTTCT------TCCEEEEEGGGHHHHHHHHHHHCTTCCEEEEECCCCSSTTSSTTCCCCHHHHHHH
T ss_pred cCCCcCCHHHHHHHHHhCc------CCCEEeccCccCHHHHHHHHHhCCCCCEEEeecCccccccccccCccCHHHHHHH
Confidence 77776554433 2234444 677777763322222333334566677777773 3444332 222
Q ss_pred ccCCCCCCEEeCcCCcCCcccCCCchhhhcC-CCCCCEEEcc----CccCccc-----cchHHHhcCCCCCEEEccCCc-
Q 037325 387 IGNLTLLKELYLASNQMNGQKISDSYQHLKN-QTELRTLVLN----KARISDT-----ISDWFWQLSLTLDELDVAYNE- 455 (598)
Q Consensus 387 l~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~-~~~L~~L~l~----~n~l~~~-----~~~~~~~~~~~L~~L~ls~n~- 455 (598)
...+++|++|+++.|.+++.. +..+.. +++|+.|+++ .|.+++. ++..+ ..+++|++|++++|.
T Consensus 374 ~~~~~~L~~L~l~~~~l~~~~----~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~~~~~~~~-~~~~~L~~L~L~~~~~ 448 (592)
T 3ogk_B 374 AQGCQELEYMAVYVSDITNES----LESIGTYLKNLCDFRLVLLDREERITDLPLDNGVRSLL-IGCKKLRRFAFYLRQG 448 (592)
T ss_dssp HHHCTTCSEEEEEESCCCHHH----HHHHHHHCCSCCEEEEEECSCCSCCSSCCCHHHHHHHH-HHCTTCCEEEEECCGG
T ss_pred HhhCccCeEEEeecCCccHHH----HHHHHhhCCCCcEEEEeecCCCccccCchHHHHHHHHH-HhCCCCCEEEEecCCC
Confidence 344666777777666665433 222332 6666666664 4455543 22222 235666666665432
Q ss_pred -CcccCCCCcccCCCCEEEcccCcCcccCCCCCcCCcEEEccCCcccccC-CchhhcccCCCCCccccCCCCeEeCcCCc
Q 037325 456 -LRGRVPNSLGFNFPAKVDLSFNNFEGRLLLWSFNVTKLYLRDNSFSGLI-PNDIGQNLPFLTDLGNLKQLITLVISNNN 533 (598)
Q Consensus 456 -~~~~~p~~~~~~~L~~l~ls~n~l~~~~~~~~~~L~~L~ls~n~l~~~~-p~~~~~~~~~~~~~~~l~~L~~L~Ls~N~ 533 (598)
+++..+..+. ..+++|++|++++|++++.. +..+.. +++|++|++++|.
T Consensus 449 ~l~~~~~~~~~-------------------~~~~~L~~L~L~~n~l~~~~~~~~~~~----------~~~L~~L~l~~n~ 499 (592)
T 3ogk_B 449 GLTDLGLSYIG-------------------QYSPNVRWMLLGYVGESDEGLMEFSRG----------CPNLQKLEMRGCC 499 (592)
T ss_dssp GCCHHHHHHHH-------------------HSCTTCCEEEECSCCSSHHHHHHHHTC----------CTTCCEEEEESCC
T ss_pred CccHHHHHHHH-------------------HhCccceEeeccCCCCCHHHHHHHHhc----------CcccCeeeccCCC
Confidence 3322222111 12445666666666665422 222222 5666666666666
Q ss_pred cccc-cchhccCCCCCCEEECCCCcCccc
Q 037325 534 LSGE-IPLLFSNISFLYILDMSNNSLSGS 561 (598)
Q Consensus 534 l~~~-~p~~~~~l~~L~~L~ls~N~l~~~ 561 (598)
+++. ++..+..+++|++|++++|++++.
T Consensus 500 l~~~~~~~~~~~l~~L~~L~ls~n~it~~ 528 (592)
T 3ogk_B 500 FSERAIAAAVTKLPSLRYLWVQGYRASMT 528 (592)
T ss_dssp CBHHHHHHHHHHCSSCCEEEEESCBCCTT
T ss_pred CcHHHHHHHHHhcCccCeeECcCCcCCHH
Confidence 6544 333344566666666666666554
|
| >1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=5.5e-29 Score=248.78 Aligned_cols=268 Identities=18% Similarity=0.194 Sum_probs=144.4
Q ss_pred CCCEEEccCCcccccCCccccCCCCccEEECcCCCcCccccchhhcCCCCCCEEecccccCCcccchhhhCCCCCCCCCC
Q 037325 265 SLLCLDLGSNDLQGDIPDGFASLNSLQELDLSGNSFLGGQLSRNLGKLCNLRTMILSRNNISSEVSDFLDGLSECTNSIL 344 (598)
Q Consensus 265 ~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~~~~~~~ 344 (598)
+++.|++++|.+++..+..+..+++|++|++++|. +.+..|..+..+++|++|++++|.++......+ + +
T Consensus 53 ~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~---~------~ 122 (330)
T 1xku_A 53 DTALLDLQNNKITEIKDGDFKNLKNLHTLILINNK-ISKISPGAFAPLVKLERLYLSKNQLKELPEKMP---K------T 122 (330)
T ss_dssp TCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSC-CCCBCTTTTTTCTTCCEEECCSSCCSBCCSSCC---T------T
T ss_pred CCeEEECCCCcCCEeChhhhccCCCCCEEECCCCc-CCeeCHHHhcCCCCCCEEECCCCcCCccChhhc---c------c
Confidence 34444444444443333334444444444444444 333334444444444444444444442211111 1 4
Q ss_pred ccEEEccCccccccCccccCCCCCCCEEEccCCcCCc--cchhhccCCCCCCEEeCcCCcCCcccCCCchhhhcCCCCCC
Q 037325 345 LEKLELRFNQFTGILPISLGSLKNLRHLVLWQNSFLG--SIPPSIGNLTLLKELYLASNQMNGQKISDSYQHLKNQTELR 422 (598)
Q Consensus 345 L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~ls~n~l~~--~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~~~~L~ 422 (598)
|++|++++|.+++..+..+..+++|+.|++++|.+.. ..+..+..+++|++|++++|.++... .. ..++|+
T Consensus 123 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~l~--~~-----~~~~L~ 195 (330)
T 1xku_A 123 LQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIP--QG-----LPPSLT 195 (330)
T ss_dssp CCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCCSCC--SS-----CCTTCS
T ss_pred ccEEECCCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCccccCC--cc-----ccccCC
Confidence 6666666666655555555666666666666666542 44455666666666666666665432 11 114566
Q ss_pred EEEccCccCccccchHHHhcCCCCCEEEccCCcCcccCCCCcccCCCCEEEcccCcCcccCCCCCcCCcEEEccCCcccc
Q 037325 423 TLVLNKARISDTISDWFWQLSLTLDELDVAYNELRGRVPNSLGFNFPAKVDLSFNNFEGRLLLWSFNVTKLYLRDNSFSG 502 (598)
Q Consensus 423 ~L~l~~n~l~~~~~~~~~~~~~~L~~L~ls~n~~~~~~p~~~~~~~L~~l~ls~n~l~~~~~~~~~~L~~L~ls~n~l~~ 502 (598)
+|++++|++++..+..+.. +++|++|++++|.+++..+..+. .+++|++|++++|+++
T Consensus 196 ~L~l~~n~l~~~~~~~~~~-l~~L~~L~Ls~n~l~~~~~~~~~--------------------~l~~L~~L~L~~N~l~- 253 (330)
T 1xku_A 196 ELHLDGNKITKVDAASLKG-LNNLAKLGLSFNSISAVDNGSLA--------------------NTPHLRELHLNNNKLV- 253 (330)
T ss_dssp EEECTTSCCCEECTGGGTT-CTTCCEEECCSSCCCEECTTTGG--------------------GSTTCCEEECCSSCCS-
T ss_pred EEECCCCcCCccCHHHhcC-CCCCCEEECCCCcCceeChhhcc--------------------CCCCCCEEECCCCcCc-
Confidence 6666666665554444443 45566666666655544333222 1345666666667666
Q ss_pred cCCchhhcccCCCCCccccCCCCeEeCcCCccccccchhccC------CCCCCEEECCCCcCcc--ccchhccCCCCCCE
Q 037325 503 LIPNDIGQNLPFLTDLGNLKQLITLVISNNNLSGEIPLLFSN------ISFLYILDMSNNSLSG--STPESIGSLRTVKF 574 (598)
Q Consensus 503 ~~p~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~------l~~L~~L~ls~N~l~~--~~p~~l~~l~~L~~ 574 (598)
.+|..+.. +++|+.|++++|++++..+..|.. .+.++.|++++|.+.. ..|..+..+.+++.
T Consensus 254 ~lp~~l~~----------l~~L~~L~l~~N~i~~~~~~~f~~~~~~~~~~~l~~l~l~~N~~~~~~i~~~~f~~~~~l~~ 323 (330)
T 1xku_A 254 KVPGGLAD----------HKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAA 323 (330)
T ss_dssp SCCTTTTT----------CSSCCEEECCSSCCCCCCTTSSSCSSCCTTSCCCSEEECCSSSSCGGGSCGGGGTTCCCGGG
T ss_pred cCChhhcc----------CCCcCEEECCCCcCCccChhhcCCcccccccccccceEeecCcccccccCccccccccceeE
Confidence 56665555 677777777777777555554432 3667777787777653 45667777777888
Q ss_pred EEccCCC
Q 037325 575 LVLRNNY 581 (598)
Q Consensus 575 L~l~~n~ 581 (598)
+++++|+
T Consensus 324 l~L~~N~ 330 (330)
T 1xku_A 324 VQLGNYK 330 (330)
T ss_dssp EEC----
T ss_pred EEecccC
Confidence 8887774
|
| >2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} | Back alignment and structure |
|---|
Probab=99.97 E-value=3.1e-29 Score=250.70 Aligned_cols=288 Identities=20% Similarity=0.249 Sum_probs=162.0
Q ss_pred CccEEEccCCCCCCCcchhhhcCCCCCEEEccCCcccccCCccccCCCCccEEECcCCCcCccccchhhcCCCCCCEEec
Q 037325 241 SLQVLDLSNNDFNSTTPHWLFNITSLLCLDLGSNDLQGDIPDGFASLNSLQELDLSGNSFLGGQLSRNLGKLCNLRTMIL 320 (598)
Q Consensus 241 ~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~l~~l~~L~~L~l 320 (598)
+++.++++++.++ .+|..+ .++++.|++++|.+.+..+..+..+++|++|++++|. +.+..|..+..+++|++|++
T Consensus 34 ~l~~l~~~~~~l~-~ip~~~--~~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L 109 (332)
T 2ft3_A 34 HLRVVQCSDLGLK-AVPKEI--SPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNK-ISKIHEKAFSPLRKLQKLYI 109 (332)
T ss_dssp ETTEEECCSSCCS-SCCSCC--CTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSC-CCEECGGGSTTCTTCCEEEC
T ss_pred cCCEEECCCCCcc-ccCCCC--CCCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCc-cCccCHhHhhCcCCCCEEEC
Confidence 4555555555544 233222 2355555555555554444455555555555555555 34444555555555555555
Q ss_pred ccccCCcccchhhhCCCCCCCCCCccEEEccCccccccCccccCCCCCCCEEEccCCcCCc--cchhhccCCCCCCEEeC
Q 037325 321 SRNNISSEVSDFLDGLSECTNSILLEKLELRFNQFTGILPISLGSLKNLRHLVLWQNSFLG--SIPPSIGNLTLLKELYL 398 (598)
Q Consensus 321 ~~n~l~~~~~~~~~~l~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~ls~n~l~~--~~~~~l~~l~~L~~L~l 398 (598)
++|.+....+..+ + +|++|++++|.+++..+..+..+++|+.|++++|.++. ..+..+..+ +|++|++
T Consensus 110 ~~n~l~~l~~~~~---~------~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~l 179 (332)
T 2ft3_A 110 SKNHLVEIPPNLP---S------SLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRI 179 (332)
T ss_dssp CSSCCCSCCSSCC---T------TCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCSCCBC
T ss_pred CCCcCCccCcccc---c------cCCEEECCCCccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCC-ccCEEEC
Confidence 5555543222111 1 56666666666665544456666666666666666642 444455555 6666666
Q ss_pred cCCcCCcccCCCchhhhcCCCCCCEEEccCccCccccchHHHhcCCCCCEEEccCCcCcccCCCCcccCCCCEEEcccCc
Q 037325 399 ASNQMNGQKISDSYQHLKNQTELRTLVLNKARISDTISDWFWQLSLTLDELDVAYNELRGRVPNSLGFNFPAKVDLSFNN 478 (598)
Q Consensus 399 ~~n~l~~~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~ls~n~~~~~~p~~~~~~~L~~l~ls~n~ 478 (598)
++|.+++. |.. -.++|+.|++++|++++..+..+.. +++|++|++++|++++..+..+.
T Consensus 180 ~~n~l~~l--~~~-----~~~~L~~L~l~~n~i~~~~~~~l~~-l~~L~~L~L~~N~l~~~~~~~~~------------- 238 (332)
T 2ft3_A 180 SEAKLTGI--PKD-----LPETLNELHLDHNKIQAIELEDLLR-YSKLYRLGLGHNQIRMIENGSLS------------- 238 (332)
T ss_dssp CSSBCSSC--CSS-----SCSSCSCCBCCSSCCCCCCTTSSTT-CTTCSCCBCCSSCCCCCCTTGGG-------------
T ss_pred cCCCCCcc--Ccc-----ccCCCCEEECCCCcCCccCHHHhcC-CCCCCEEECCCCcCCcCChhHhh-------------
Confidence 66666553 211 1145555555555555444443333 44555555555555543332222
Q ss_pred CcccCCCCCcCCcEEEccCCcccccCCchhhcccCCCCCccccCCCCeEeCcCCccccccchhccC------CCCCCEEE
Q 037325 479 FEGRLLLWSFNVTKLYLRDNSFSGLIPNDIGQNLPFLTDLGNLKQLITLVISNNNLSGEIPLLFSN------ISFLYILD 552 (598)
Q Consensus 479 l~~~~~~~~~~L~~L~ls~n~l~~~~p~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~------l~~L~~L~ 552 (598)
.+++|++|++++|+++ .+|..+.. +++|+.|++++|.+++..+..|.. .++|+.|+
T Consensus 239 -------~l~~L~~L~L~~N~l~-~lp~~l~~----------l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~l~~L~ 300 (332)
T 2ft3_A 239 -------FLPTLRELHLDNNKLS-RVPAGLPD----------LKLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGIS 300 (332)
T ss_dssp -------GCTTCCEEECCSSCCC-BCCTTGGG----------CTTCCEEECCSSCCCBCCTTSSSCSSCCSSSCCBSEEE
T ss_pred -------CCCCCCEEECCCCcCe-ecChhhhc----------CccCCEEECCCCCCCccChhHccccccccccccccceE
Confidence 2456777777777776 66666665 777888888888887655555544 35677888
Q ss_pred CCCCcCc--cccchhccCCCCCCEEEccCCC
Q 037325 553 MSNNSLS--GSTPESIGSLRTVKFLVLRNNY 581 (598)
Q Consensus 553 ls~N~l~--~~~p~~l~~l~~L~~L~l~~n~ 581 (598)
+++|.+. +..|..+..+++|+.+++++|+
T Consensus 301 l~~N~~~~~~~~~~~~~~l~~L~~l~l~~n~ 331 (332)
T 2ft3_A 301 LFNNPVPYWEVQPATFRCVTDRLAIQFGNYK 331 (332)
T ss_dssp CCSSSSCGGGSCGGGGTTBCCSTTEEC----
T ss_pred eecCcccccccCcccccccchhhhhhccccc
Confidence 8888776 5667777888888888888774
|
| >1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=1.9e-28 Score=244.84 Aligned_cols=269 Identities=21% Similarity=0.205 Sum_probs=185.4
Q ss_pred CCCCEEeCCCCCCCCCCcchhccCCCCCCEEECcCCCCCcccchhccCCCCCCEEEccCCCCCCCccChhhhcCCCCCcE
Q 037325 113 KDLEYLDLSMNNFTGFQVPEFIGSLKELRYLNLSGSFFSGTIPQTLGNLSNLLYLDLNNFLDQSNQIDLEWLSGLSSLVY 192 (598)
Q Consensus 113 ~~L~~L~Ls~n~l~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~~l~~L~~ 192 (598)
+++++|++++|.+++. .+..+.++++|++|++++|.+++..|..++.+++|++|++++|.+...+.. -.++|++
T Consensus 52 ~~l~~L~L~~n~i~~~-~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~l~~~-----~~~~L~~ 125 (330)
T 1xku_A 52 PDTALLDLQNNKITEI-KDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLKELPEK-----MPKTLQE 125 (330)
T ss_dssp TTCCEEECCSSCCCCB-CTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCSBCCSS-----CCTTCCE
T ss_pred CCCeEEECCCCcCCEe-ChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECCCCcCCccChh-----hcccccE
Confidence 5677777777777754 444677777778888877777766677777777778887777765432221 1267777
Q ss_pred EEcCCCCCCCCcccchHhhhcCCCCCEEEcCCCCCCC--CCCCCCcCCCCCccEEEccCCCCCCCcchhhhcCCCCCEEE
Q 037325 193 FNLGGADLSKAGAYWLEVFNKLHSFVELHLPNCNLPS--LPLSFPSLNFASLQVLDLSNNDFNSTTPHWLFNITSLLCLD 270 (598)
Q Consensus 193 L~l~~n~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~--~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~ 270 (598)
|++++|.+.... +..+..+++|++|++++|.++. ..+ ..+..+++|++|++++|.++. +|..+. ++|++|+
T Consensus 126 L~l~~n~l~~~~---~~~~~~l~~L~~L~l~~n~l~~~~~~~-~~~~~l~~L~~L~l~~n~l~~-l~~~~~--~~L~~L~ 198 (330)
T 1xku_A 126 LRVHENEITKVR---KSVFNGLNQMIVVELGTNPLKSSGIEN-GAFQGMKKLSYIRIADTNITT-IPQGLP--PSLTELH 198 (330)
T ss_dssp EECCSSCCCBBC---HHHHTTCTTCCEEECCSSCCCGGGBCT-TGGGGCTTCCEEECCSSCCCS-CCSSCC--TTCSEEE
T ss_pred EECCCCcccccC---HhHhcCCccccEEECCCCcCCccCcCh-hhccCCCCcCEEECCCCcccc-CCcccc--ccCCEEE
Confidence 888777777665 5567777788888888777754 222 455667778888888777764 333332 6778888
Q ss_pred ccCCcccccCCccccCCCCccEEECcCCCcCccccchhhcCCCCCCEEecccccCCcccchhhhCCCCCCCCCCccEEEc
Q 037325 271 LGSNDLQGDIPDGFASLNSLQELDLSGNSFLGGQLSRNLGKLCNLRTMILSRNNISSEVSDFLDGLSECTNSILLEKLEL 350 (598)
Q Consensus 271 l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~~~~~~~L~~L~L 350 (598)
+++|.+++..+..+..+++|++|++++|. +.+..+..+..+++|++|++++|.+. ..|..+..++ +|++|++
T Consensus 199 l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~------~L~~L~l 270 (330)
T 1xku_A 199 LDGNKITKVDAASLKGLNNLAKLGLSFNS-ISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLADHK------YIQVVYL 270 (330)
T ss_dssp CTTSCCCEECTGGGTTCTTCCEEECCSSC-CCEECTTTGGGSTTCCEEECCSSCCS-SCCTTTTTCS------SCCEEEC
T ss_pred CCCCcCCccCHHHhcCCCCCCEEECCCCc-CceeChhhccCCCCCCEEECCCCcCc-cCChhhccCC------CcCEEEC
Confidence 88887776667777777888888888887 55555566777778888888888777 4444555555 7888888
Q ss_pred cCccccccCccccCC------CCCCCEEEccCCcCCc--cchhhccCCCCCCEEeCcCCc
Q 037325 351 RFNQFTGILPISLGS------LKNLRHLVLWQNSFLG--SIPPSIGNLTLLKELYLASNQ 402 (598)
Q Consensus 351 s~n~l~~~~~~~l~~------l~~L~~L~ls~n~l~~--~~~~~l~~l~~L~~L~l~~n~ 402 (598)
++|++++..+..+.. .+.++.+++++|.+.. ..|..+..+..++.+++++|+
T Consensus 271 ~~N~i~~~~~~~f~~~~~~~~~~~l~~l~l~~N~~~~~~i~~~~f~~~~~l~~l~L~~N~ 330 (330)
T 1xku_A 271 HNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQLGNYK 330 (330)
T ss_dssp CSSCCCCCCTTSSSCSSCCTTSCCCSEEECCSSSSCGGGSCGGGGTTCCCGGGEEC----
T ss_pred CCCcCCccChhhcCCcccccccccccceEeecCcccccccCccccccccceeEEEecccC
Confidence 888877655555432 3677888888887753 455677888888888888874
|
| >2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} | Back alignment and structure |
|---|
Probab=99.97 E-value=6.3e-29 Score=248.49 Aligned_cols=291 Identities=22% Similarity=0.286 Sum_probs=187.1
Q ss_pred CCCEEeCCCCCCCCCCcchhccCCCCCCEEECcCCCCCcccchhccCCCCCCEEEccCCCCCCCccChhhhcCCCCCcEE
Q 037325 114 DLEYLDLSMNNFTGFQVPEFIGSLKELRYLNLSGSFFSGTIPQTLGNLSNLLYLDLNNFLDQSNQIDLEWLSGLSSLVYF 193 (598)
Q Consensus 114 ~L~~L~Ls~n~l~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~~l~~L~~L 193 (598)
+++.++++++.++ .+|..+. ++|++|++++|.+++..|..|.++++|++|++++|.+.
T Consensus 34 ~l~~l~~~~~~l~--~ip~~~~--~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~------------------ 91 (332)
T 2ft3_A 34 HLRVVQCSDLGLK--AVPKEIS--PDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKIS------------------ 91 (332)
T ss_dssp ETTEEECCSSCCS--SCCSCCC--TTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCC------------------
T ss_pred cCCEEECCCCCcc--ccCCCCC--CCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccC------------------
Confidence 6888999988887 4676553 68889999988888666667777777777777776443
Q ss_pred EcCCCCCCCCcccchHhhhcCCCCCEEEcCCCCCCCCCCCCCcCCCCCccEEEccCCCCCCCcchhhhcCCCCCEEEccC
Q 037325 194 NLGGADLSKAGAYWLEVFNKLHSFVELHLPNCNLPSLPLSFPSLNFASLQVLDLSNNDFNSTTPHWLFNITSLLCLDLGS 273 (598)
Q Consensus 194 ~l~~n~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~ 273 (598)
... +..+..+++|++|++++|.++.++.... ++|++|++++|++++..+..+.++++|+.|++++
T Consensus 92 --------~~~---~~~~~~l~~L~~L~L~~n~l~~l~~~~~----~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~ 156 (332)
T 2ft3_A 92 --------KIH---EKAFSPLRKLQKLYISKNHLVEIPPNLP----SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGG 156 (332)
T ss_dssp --------EEC---GGGSTTCTTCCEEECCSSCCCSCCSSCC----TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCS
T ss_pred --------ccC---HhHhhCcCCCCEEECCCCcCCccCcccc----ccCCEEECCCCccCccCHhHhCCCccCCEEECCC
Confidence 221 3445555556666666665555443211 5777777777777766666677777777777777
Q ss_pred Ccccc--cCCccccCCCCccEEECcCCCcCccccchhhcCCCCCCEEecccccCCcccchhhhCCCCCCCCCCccEEEcc
Q 037325 274 NDLQG--DIPDGFASLNSLQELDLSGNSFLGGQLSRNLGKLCNLRTMILSRNNISSEVSDFLDGLSECTNSILLEKLELR 351 (598)
Q Consensus 274 n~l~~--~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~~~~~~~L~~L~Ls 351 (598)
|.++. ..+..+..+ +|++|++++|.+ .. +|..+. ++|++|++++|.+.+..+..+..++ +|++|+++
T Consensus 157 n~l~~~~~~~~~~~~l-~L~~L~l~~n~l-~~-l~~~~~--~~L~~L~l~~n~i~~~~~~~l~~l~------~L~~L~L~ 225 (332)
T 2ft3_A 157 NPLENSGFEPGAFDGL-KLNYLRISEAKL-TG-IPKDLP--ETLNELHLDHNKIQAIELEDLLRYS------KLYRLGLG 225 (332)
T ss_dssp CCCBGGGSCTTSSCSC-CCSCCBCCSSBC-SS-CCSSSC--SSCSCCBCCSSCCCCCCTTSSTTCT------TCSCCBCC
T ss_pred CccccCCCCcccccCC-ccCEEECcCCCC-Cc-cCcccc--CCCCEEECCCCcCCccCHHHhcCCC------CCCEEECC
Confidence 77752 445556555 777777777773 22 444332 5677777777777766666666665 67777777
Q ss_pred CccccccCccccCCCCCCCEEEccCCcCCccchhhccCCCCCCEEeCcCCcCCcccCCCchhhh---cCCCCCCEEEccC
Q 037325 352 FNQFTGILPISLGSLKNLRHLVLWQNSFLGSIPPSIGNLTLLKELYLASNQMNGQKISDSYQHL---KNQTELRTLVLNK 428 (598)
Q Consensus 352 ~n~l~~~~~~~l~~l~~L~~L~ls~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~l---~~~~~L~~L~l~~ 428 (598)
+|.+++..+..+..+++|++|++++|+++ .+|..+..+++|++|++++|++++.. +..+... ...+.|+.+++++
T Consensus 226 ~N~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~l~~~~-~~~~~~~~~~~~~~~l~~L~l~~ 303 (332)
T 2ft3_A 226 HNQIRMIENGSLSFLPTLRELHLDNNKLS-RVPAGLPDLKLLQVVYLHTNNITKVG-VNDFCPVGFGVKRAYYNGISLFN 303 (332)
T ss_dssp SSCCCCCCTTGGGGCTTCCEEECCSSCCC-BCCTTGGGCTTCCEEECCSSCCCBCC-TTSSSCSSCCSSSCCBSEEECCS
T ss_pred CCcCCcCChhHhhCCCCCCEEECCCCcCe-ecChhhhcCccCCEEECCCCCCCccC-hhHccccccccccccccceEeec
Confidence 77777666666777777777777777777 66666777777777777777777654 3322111 1135566677777
Q ss_pred ccCc--cccchHHHhcCCCCCEEEccCCc
Q 037325 429 ARIS--DTISDWFWQLSLTLDELDVAYNE 455 (598)
Q Consensus 429 n~l~--~~~~~~~~~~~~~L~~L~ls~n~ 455 (598)
|.+. +..+..+. .++.|+.+++++|+
T Consensus 304 N~~~~~~~~~~~~~-~l~~L~~l~l~~n~ 331 (332)
T 2ft3_A 304 NPVPYWEVQPATFR-CVTDRLAIQFGNYK 331 (332)
T ss_dssp SSSCGGGSCGGGGT-TBCCSTTEEC----
T ss_pred CcccccccCccccc-ccchhhhhhccccc
Confidence 6655 33333333 25666666666653
|
| >3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* | Back alignment and structure |
|---|
Probab=99.96 E-value=1.1e-30 Score=283.00 Aligned_cols=418 Identities=15% Similarity=0.107 Sum_probs=262.3
Q ss_pred cchhccCCCCCCEEECcCCCCC---cccchhc------------cCCCCCCEEEccCCCCCCCccChhhhcC-CC-CCcE
Q 037325 130 VPEFIGSLKELRYLNLSGSFFS---GTIPQTL------------GNLSNLLYLDLNNFLDQSNQIDLEWLSG-LS-SLVY 192 (598)
Q Consensus 130 ~p~~~~~l~~L~~L~L~~n~l~---~~~p~~l------------~~l~~L~~L~L~~n~~~~~~~~~~~~~~-l~-~L~~ 192 (598)
.+..+..+++|++|+++++... +.+|..+ ..+++|++|++++|.+. ......+.. ++ +|++
T Consensus 65 ~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~i~--~~~~~~l~~~~~~~L~~ 142 (592)
T 3ogk_B 65 PDRLSRRFPNLRSLKLKGKPRAAMFNLIPENWGGYVTPWVTEISNNLRQLKSVHFRRMIVS--DLDLDRLAKARADDLET 142 (592)
T ss_dssp HHHHHHHCTTCSEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCBCC--HHHHHHHHHHHGGGCCE
T ss_pred hHHHHHhCCCCeEEEecCCcchhhcccccccccccchHHHHHHHhhCCCCCeEEeeccEec--HHHHHHHHHhccccCcE
Confidence 4556678899999999886421 2333222 26788888888887432 222233333 33 4888
Q ss_pred EEcCCCCCCCCcccchHhhhcCCCCCEEEcCCCCCCCCCCC---CCcCCCCCccEEEccCCCCCC----CcchhhhcCCC
Q 037325 193 FNLGGADLSKAGAYWLEVFNKLHSFVELHLPNCNLPSLPLS---FPSLNFASLQVLDLSNNDFNS----TTPHWLFNITS 265 (598)
Q Consensus 193 L~l~~n~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~---~~~~~l~~L~~L~L~~n~l~~----~~~~~l~~l~~ 265 (598)
|++++|..... ..+......+++|++|++++|.+++.... .....+++|++|++++|.+++ .++..+.++++
T Consensus 143 L~L~~~~~~~~-~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~ 221 (592)
T 3ogk_B 143 LKLDKCSGFTT-DGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRS 221 (592)
T ss_dssp EEEESCEEEEH-HHHHHHHHHCTTCSEEECTTCEEECCCSHHHHHHHHHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTT
T ss_pred EECcCCCCcCH-HHHHHHHhhCCCCCEEECccccccCcchhHHHHHHhcCCCccEEEeeccCCCccCHHHHHHHHhhCCC
Confidence 88888762111 11233445778888888888876654321 123456778888888887762 33444567778
Q ss_pred CCEEEccCCcccccCCccccCCCCccEEECcCCCcC--ccccchhhcCCCCCCEEecccccCCcccchhhhCCCCCCCCC
Q 037325 266 LLCLDLGSNDLQGDIPDGFASLNSLQELDLSGNSFL--GGQLSRNLGKLCNLRTMILSRNNISSEVSDFLDGLSECTNSI 343 (598)
Q Consensus 266 L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~--~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~~~~~~ 343 (598)
|+.|++++|.+.+ ++..+..+++|++|+++..... ....+..+..+++|+.|+++++. ....+..+..++
T Consensus 222 L~~L~L~~~~~~~-l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~-~~~l~~~~~~~~------ 293 (592)
T 3ogk_B 222 LVSVKVGDFEILE-LVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMG-PNEMPILFPFAA------ 293 (592)
T ss_dssp CCEEECSSCBGGG-GHHHHHHCTTCCEEEECBCCCCTTCTTSSSCCCCCTTCCEEEETTCC-TTTGGGGGGGGG------
T ss_pred CcEEeccCccHHH-HHHHHhhhhHHHhhcccccccccchHHHHHHhhccccccccCccccc-hhHHHHHHhhcC------
Confidence 8888888877764 5566777778888887753311 12334455666777777776642 333444444444
Q ss_pred CccEEEccCccccccCc-cccCCCCCCCEEEccCCcCCccchhhccCCCCCCEEeCcC-----------CcCCcccCCCc
Q 037325 344 LLEKLELRFNQFTGILP-ISLGSLKNLRHLVLWQNSFLGSIPPSIGNLTLLKELYLAS-----------NQMNGQKISDS 411 (598)
Q Consensus 344 ~L~~L~Ls~n~l~~~~~-~~l~~l~~L~~L~ls~n~l~~~~~~~l~~l~~L~~L~l~~-----------n~l~~~~~~~~ 411 (598)
+|++|++++|.+++... ..+..+++|++|+++++...+.++.....+++|++|++++ +.+++....
T Consensus 294 ~L~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~L~~g~~~~~~~~~~~~~~~~~~~-- 371 (592)
T 3ogk_B 294 QIRKLDLLYALLETEDHCTLIQKCPNLEVLETRNVIGDRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLI-- 371 (592)
T ss_dssp GCCEEEETTCCCCHHHHHHHHTTCTTCCEEEEEGGGHHHHHHHHHHHCTTCCEEEEECCCCSSTTSSTTCCCCHHHHH--
T ss_pred CCcEEecCCCcCCHHHHHHHHHhCcCCCEEeccCccCHHHHHHHHHhCCCCCEEEeecCccccccccccCccCHHHHH--
Confidence 67777777777654332 2356677777777773322222333345667777777772 344432211
Q ss_pred hhhhcCCCCCCEEEccCccCccccchHHHhcCCCCCEEEcc----CCcCcccCCCCcccCCCCEEEcccCcCcccCCCCC
Q 037325 412 YQHLKNQTELRTLVLNKARISDTISDWFWQLSLTLDELDVA----YNELRGRVPNSLGFNFPAKVDLSFNNFEGRLLLWS 487 (598)
Q Consensus 412 ~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~ls----~n~~~~~~p~~~~~~~L~~l~ls~n~l~~~~~~~~ 487 (598)
.....+++|+.|+++.|.+++..+..+...+++|++|+++ .|.+++...+. .+ ..+...+
T Consensus 372 -~l~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~~--------------~~-~~~~~~~ 435 (592)
T 3ogk_B 372 -ALAQGCQELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDREERITDLPLDN--------------GV-RSLLIGC 435 (592)
T ss_dssp -HHHHHCTTCSEEEEEESCCCHHHHHHHHHHCCSCCEEEEEECSCCSCCSSCCCHH--------------HH-HHHHHHC
T ss_pred -HHHhhCccCeEEEeecCCccHHHHHHHHhhCCCCcEEEEeecCCCccccCchHHH--------------HH-HHHHHhC
Confidence 1134467777777777777766666665556677777775 33343211000 00 0011225
Q ss_pred cCCcEEEccCCc--ccccCCchhhcccCCCCCccccCCCCeEeCcCCcccc-ccchhccCCCCCCEEECCCCcCccc-cc
Q 037325 488 FNVTKLYLRDNS--FSGLIPNDIGQNLPFLTDLGNLKQLITLVISNNNLSG-EIPLLFSNISFLYILDMSNNSLSGS-TP 563 (598)
Q Consensus 488 ~~L~~L~ls~n~--l~~~~p~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~-~~p~~~~~l~~L~~L~ls~N~l~~~-~p 563 (598)
++|++|++++|. +++..+..+.. .+++|+.|++++|.+++ .++..+.++++|++|++++|.+++. ++
T Consensus 436 ~~L~~L~L~~~~~~l~~~~~~~~~~---------~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~ 506 (592)
T 3ogk_B 436 KKLRRFAFYLRQGGLTDLGLSYIGQ---------YSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCCFSERAIA 506 (592)
T ss_dssp TTCCEEEEECCGGGCCHHHHHHHHH---------SCTTCCEEEECSCCSSHHHHHHHHTCCTTCCEEEEESCCCBHHHHH
T ss_pred CCCCEEEEecCCCCccHHHHHHHHH---------hCccceEeeccCCCCCHHHHHHHHhcCcccCeeeccCCCCcHHHHH
Confidence 789999998654 67666655543 37899999999999987 4566778999999999999998765 45
Q ss_pred hhccCCCCCCEEEccCCCCccc
Q 037325 564 ESIGSLRTVKFLVLRNNYLSGK 585 (598)
Q Consensus 564 ~~l~~l~~L~~L~l~~n~l~g~ 585 (598)
..+..+++|++|++++|++++.
T Consensus 507 ~~~~~l~~L~~L~ls~n~it~~ 528 (592)
T 3ogk_B 507 AAVTKLPSLRYLWVQGYRASMT 528 (592)
T ss_dssp HHHHHCSSCCEEEEESCBCCTT
T ss_pred HHHHhcCccCeeECcCCcCCHH
Confidence 5557899999999999999865
|
| >2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* | Back alignment and structure |
|---|
Probab=99.95 E-value=1e-30 Score=283.36 Aligned_cols=165 Identities=15% Similarity=0.148 Sum_probs=88.9
Q ss_pred ccccCCCCCCEEeCCCCCCCC-CC-c------------chhccCCCCCCEEECcCCCCCcccchhcc-CCCCCCEEEccC
Q 037325 107 PSLLQLKDLEYLDLSMNNFTG-FQ-V------------PEFIGSLKELRYLNLSGSFFSGTIPQTLG-NLSNLLYLDLNN 171 (598)
Q Consensus 107 ~~l~~l~~L~~L~Ls~n~l~~-~~-~------------p~~~~~l~~L~~L~L~~n~l~~~~p~~l~-~l~~L~~L~L~~ 171 (598)
..+.++++|++|+++++.... .. . +.....+++|++|++++|.+++..+..+. .+++|++|++++
T Consensus 60 ~~~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~ 139 (594)
T 2p1m_B 60 TVIRRFPKVRSVELKGKPHFADFNLVPDGWGGYVYPWIEAMSSSYTWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSS 139 (594)
T ss_dssp HHHHHCTTCCEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCBCCHHHHHHHHHHCTTCCEEEEES
T ss_pred HHHhhCCCceEEeccCCCchhhcccccccccchhhHHHHHHHHhCCCCCeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCC
Confidence 356778999999999875221 00 1 12234578888888888888776666665 678888888887
Q ss_pred CCCCCCccChhhhcCCCCCcEEEcCCCCCCCCcccchH-hhhcCCCCCEEEcCCCCCCCCCC---CCCcCCCCCccEEEc
Q 037325 172 FLDQSNQIDLEWLSGLSSLVYFNLGGADLSKAGAYWLE-VFNKLHSFVELHLPNCNLPSLPL---SFPSLNFASLQVLDL 247 (598)
Q Consensus 172 n~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~-~~~~l~~L~~L~l~~~~l~~~~~---~~~~~~l~~L~~L~L 247 (598)
|.............++++|++|++++|.+++....+.. ....+++|++|++++|. ..+.. ......+++|++|++
T Consensus 140 ~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~~~L~~L~l~~~~-~~~~~~~l~~l~~~~~~L~~L~L 218 (594)
T 2p1m_B 140 CEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISCLA-SEVSFSALERLVTRCPNLKSLKL 218 (594)
T ss_dssp CEEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCTTCCCCCEEECTTCC-SCCCHHHHHHHHHHCTTCCEEEC
T ss_pred cCCCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhhcCCcCcEEEecccC-CcCCHHHHHHHHHhCCCCcEEec
Confidence 63211111222334667777777777766554422111 12244556666655554 11110 001122355555555
Q ss_pred cCCCCCCCcchhhhcCCCCCEEEcc
Q 037325 248 SNNDFNSTTPHWLFNITSLLCLDLG 272 (598)
Q Consensus 248 ~~n~l~~~~~~~l~~l~~L~~L~l~ 272 (598)
++|...+.++..+.++++|+.|++.
T Consensus 219 ~~~~~~~~l~~~~~~~~~L~~L~l~ 243 (594)
T 2p1m_B 219 NRAVPLEKLATLLQRAPQLEELGTG 243 (594)
T ss_dssp CTTSCHHHHHHHHHHCTTCSEEECS
T ss_pred CCCCcHHHHHHHHhcCCcceEcccc
Confidence 5552211244444455555555533
|
| >2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.95 E-value=5.5e-27 Score=236.52 Aligned_cols=285 Identities=18% Similarity=0.145 Sum_probs=175.6
Q ss_pred CCCCCCEEeCCCCCCCCCCcchhccCCCCCCEEECcCCCCCcccchhccCCCCCCEEEccCCCCCCCccChhhhcCCCCC
Q 037325 111 QLKDLEYLDLSMNNFTGFQVPEFIGSLKELRYLNLSGSFFSGTIPQTLGNLSNLLYLDLNNFLDQSNQIDLEWLSGLSSL 190 (598)
Q Consensus 111 ~l~~L~~L~Ls~n~l~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~~l~~L 190 (598)
.|+.....+++++.++ .+|..+. ++|++|++++|++++..+..+.++++|++|++++|.+.. .....+.++++|
T Consensus 29 ~C~~~~~c~~~~~~l~--~iP~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~--~~~~~~~~l~~L 102 (353)
T 2z80_A 29 SCDRNGICKGSSGSLN--SIPSGLT--EAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINT--IEEDSFSSLGSL 102 (353)
T ss_dssp EECTTSEEECCSTTCS--SCCTTCC--TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCE--ECTTTTTTCTTC
T ss_pred CCCCCeEeeCCCCCcc--ccccccc--ccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCc--cCHhhcCCCCCC
Confidence 4555556777777777 4666543 477888888887775444467777777777777765432 222346677777
Q ss_pred cEEEcCCCCCCCCcccchHhhhcCCCCCEEEcCCCCCCCCCCCCCcCCCCCccEEEccCC-CCCCCcchhhhcCCCCCEE
Q 037325 191 VYFNLGGADLSKAGAYWLEVFNKLHSFVELHLPNCNLPSLPLSFPSLNFASLQVLDLSNN-DFNSTTPHWLFNITSLLCL 269 (598)
Q Consensus 191 ~~L~l~~n~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~l~~l~~L~~L 269 (598)
++|++++|.++... ...+..+++|++|++++|.++.++....+..+++|++|++++| .+....+..+.++++|++|
T Consensus 103 ~~L~Ls~n~l~~~~---~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L 179 (353)
T 2z80_A 103 EHLDLSYNYLSNLS---SSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEEL 179 (353)
T ss_dssp CEEECCSSCCSSCC---HHHHTTCTTCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEE
T ss_pred CEEECCCCcCCcCC---HhHhCCCccCCEEECCCCCCcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEE
Confidence 77777777777654 4557778888888888888877665345667778888888877 4555555667777777777
Q ss_pred EccCCcccccCCccccCCCCccEEECcCCCcCccccchhhcCCCCCCEEecccccCCcccchhhhCCCCCCCCCCccEEE
Q 037325 270 DLGSNDLQGDIPDGFASLNSLQELDLSGNSFLGGQLSRNLGKLCNLRTMILSRNNISSEVSDFLDGLSECTNSILLEKLE 349 (598)
Q Consensus 270 ~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~~~~~~~L~~L~ 349 (598)
++++|.+++..|..+..+++|++|++++|. +.......+..+++|++|++++|.+++..+..+...
T Consensus 180 ~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~-l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~------------- 245 (353)
T 2z80_A 180 EIDASDLQSYEPKSLKSIQNVSHLILHMKQ-HILLLEIFVDVTSSVECLELRDTDLDTFHFSELSTG------------- 245 (353)
T ss_dssp EEEETTCCEECTTTTTTCSEEEEEEEECSC-STTHHHHHHHHTTTEEEEEEESCBCTTCCCC------------------
T ss_pred ECCCCCcCccCHHHHhccccCCeecCCCCc-cccchhhhhhhcccccEEECCCCccccccccccccc-------------
Confidence 777777776667777777777777777776 332222333446666666666666655433222211
Q ss_pred ccCccccccCccccCCCCCCCEEEccCCcCCc----cchhhccCCCCCCEEeCcCCcCCcccCCCchhhhcCCCCCCEEE
Q 037325 350 LRFNQFTGILPISLGSLKNLRHLVLWQNSFLG----SIPPSIGNLTLLKELYLASNQMNGQKISDSYQHLKNQTELRTLV 425 (598)
Q Consensus 350 Ls~n~l~~~~~~~l~~l~~L~~L~ls~n~l~~----~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~~~~L~~L~ 425 (598)
.....++.++++++.+.+ .+|..+..+++|++|++++|+++.. +.. .+..+++|++|+
T Consensus 246 --------------~~~~~l~~l~L~~~~l~~~~l~~l~~~l~~l~~L~~L~Ls~N~l~~i--~~~--~~~~l~~L~~L~ 307 (353)
T 2z80_A 246 --------------ETNSLIKKFTFRNVKITDESLFQVMKLLNQISGLLELEFSRNQLKSV--PDG--IFDRLTSLQKIW 307 (353)
T ss_dssp ---------------CCCCCCEEEEESCBCCHHHHHHHHHHHHTCTTCCEEECCSSCCCCC--CTT--TTTTCTTCCEEE
T ss_pred --------------cccchhhccccccccccCcchhhhHHHHhcccCCCEEECCCCCCCcc--CHH--HHhcCCCCCEEE
Confidence 122334444555544443 2444555566666666666665532 211 134556666666
Q ss_pred ccCccCccccc
Q 037325 426 LNKARISDTIS 436 (598)
Q Consensus 426 l~~n~l~~~~~ 436 (598)
+++|++.+..+
T Consensus 308 L~~N~~~~~~~ 318 (353)
T 2z80_A 308 LHTNPWDCSCP 318 (353)
T ss_dssp CCSSCBCCCHH
T ss_pred eeCCCccCcCC
Confidence 66666655443
|
| >2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.95 E-value=7.8e-27 Score=235.41 Aligned_cols=282 Identities=23% Similarity=0.248 Sum_probs=149.0
Q ss_pred CCCCCEEEcCCCCCCCCCCCCCcCCCCCccEEEccCCCCCCCcchhhhcCCCCCEEEccCCcccccCCccccCCCCccEE
Q 037325 214 LHSFVELHLPNCNLPSLPLSFPSLNFASLQVLDLSNNDFNSTTPHWLFNITSLLCLDLGSNDLQGDIPDGFASLNSLQEL 293 (598)
Q Consensus 214 l~~L~~L~l~~~~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L 293 (598)
|+.....+.+++.++.+|... .++|++|++++|.+++..+..+.++++|++|++++|.+++..+..+..+++|++|
T Consensus 30 C~~~~~c~~~~~~l~~iP~~~----~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 105 (353)
T 2z80_A 30 CDRNGICKGSSGSLNSIPSGL----TEAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHL 105 (353)
T ss_dssp ECTTSEEECCSTTCSSCCTTC----CTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEE
T ss_pred CCCCeEeeCCCCCcccccccc----cccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEE
Confidence 333444455555555544311 1345555555555554433344555555555555555544434444444445555
Q ss_pred ECcCCCcCccccchhhcCCCCCCEEecccccCCcccchhhhCCCCCCCCCCccEEEccCccccccCc-cccCCCCCCCEE
Q 037325 294 DLSGNSFLGGQLSRNLGKLCNLRTMILSRNNISSEVSDFLDGLSECTNSILLEKLELRFNQFTGILP-ISLGSLKNLRHL 372 (598)
Q Consensus 294 ~l~~n~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~~~~~~~L~~L~Ls~n~l~~~~~-~~l~~l~~L~~L 372 (598)
++++|. +++..+..+..++ +|++|++++|.+++..+ ..+..+++|++|
T Consensus 106 ~Ls~n~-------------------------l~~~~~~~~~~l~------~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L 154 (353)
T 2z80_A 106 DLSYNY-------------------------LSNLSSSWFKPLS------SLTFLNLLGNPYKTLGETSLFSHLTKLQIL 154 (353)
T ss_dssp ECCSSC-------------------------CSSCCHHHHTTCT------TCSEEECTTCCCSSSCSSCSCTTCTTCCEE
T ss_pred ECCCCc-------------------------CCcCCHhHhCCCc------cCCEEECCCCCCcccCchhhhccCCCCcEE
Confidence 555444 4443333344444 45555555555543222 244555556666
Q ss_pred EccCC-cCCccchhhccCCCCCCEEeCcCCcCCcccCCCchhhhcCCCCCCEEEccCccCccccchHHHhcCCCCCEEEc
Q 037325 373 VLWQN-SFLGSIPPSIGNLTLLKELYLASNQMNGQKISDSYQHLKNQTELRTLVLNKARISDTISDWFWQLSLTLDELDV 451 (598)
Q Consensus 373 ~ls~n-~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l 451 (598)
++++| .+.+..+..+..+++|++|++++|.+++.. +. .+..+++|++|++++|++.. ++..+...+++|++|++
T Consensus 155 ~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~-~~---~l~~l~~L~~L~l~~n~l~~-~~~~~~~~~~~L~~L~L 229 (353)
T 2z80_A 155 RVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYE-PK---SLKSIQNVSHLILHMKQHIL-LLEIFVDVTSSVECLEL 229 (353)
T ss_dssp EEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEEC-TT---TTTTCSEEEEEEEECSCSTT-HHHHHHHHTTTEEEEEE
T ss_pred ECCCCccccccCHHHccCCCCCCEEECCCCCcCccC-HH---HHhccccCCeecCCCCcccc-chhhhhhhcccccEEEC
Confidence 66555 244333445555666666666666655543 22 24555666666666666643 33334434677777777
Q ss_pred cCCcCcccCCCCcccCCCCEEEcccCcCcccCCCCCcCCcEEEccCCcccc----cCCchhhcccCCCCCccccCCCCeE
Q 037325 452 AYNELRGRVPNSLGFNFPAKVDLSFNNFEGRLLLWSFNVTKLYLRDNSFSG----LIPNDIGQNLPFLTDLGNLKQLITL 527 (598)
Q Consensus 452 s~n~~~~~~p~~~~~~~L~~l~ls~n~l~~~~~~~~~~L~~L~ls~n~l~~----~~p~~~~~~~~~~~~~~~l~~L~~L 527 (598)
++|.+++..+..+... ...+.++.++++++.+++ .+|..+.. +++|+.|
T Consensus 230 ~~n~l~~~~~~~l~~~-----------------~~~~~l~~l~L~~~~l~~~~l~~l~~~l~~----------l~~L~~L 282 (353)
T 2z80_A 230 RDTDLDTFHFSELSTG-----------------ETNSLIKKFTFRNVKITDESLFQVMKLLNQ----------ISGLLEL 282 (353)
T ss_dssp ESCBCTTCCCC-----------------------CCCCCCEEEEESCBCCHHHHHHHHHHHHT----------CTTCCEE
T ss_pred CCCccccccccccccc-----------------cccchhhccccccccccCcchhhhHHHHhc----------ccCCCEE
Confidence 7777775443322210 012345555555555554 34555554 6777777
Q ss_pred eCcCCccccccchh-ccCCCCCCEEECCCCcCccccc
Q 037325 528 VISNNNLSGEIPLL-FSNISFLYILDMSNNSLSGSTP 563 (598)
Q Consensus 528 ~Ls~N~l~~~~p~~-~~~l~~L~~L~ls~N~l~~~~p 563 (598)
++++|+++ .+|.. |+++++|++|++++|.+++..|
T Consensus 283 ~Ls~N~l~-~i~~~~~~~l~~L~~L~L~~N~~~~~~~ 318 (353)
T 2z80_A 283 EFSRNQLK-SVPDGIFDRLTSLQKIWLHTNPWDCSCP 318 (353)
T ss_dssp ECCSSCCC-CCCTTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred ECCCCCCC-ccCHHHHhcCCCCCEEEeeCCCccCcCC
Confidence 77777777 55555 4777777777777777776554
|
| >2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} | Back alignment and structure |
|---|
Probab=99.95 E-value=4.3e-27 Score=232.39 Aligned_cols=230 Identities=25% Similarity=0.243 Sum_probs=121.4
Q ss_pred CCCCEEeCCCCCCCCCCcchhccCCCCCCEEECcCCCCCc--ccchhccCCCCCCEEEccCCCCCCCccChhhhcCCCCC
Q 037325 113 KDLEYLDLSMNNFTGFQVPEFIGSLKELRYLNLSGSFFSG--TIPQTLGNLSNLLYLDLNNFLDQSNQIDLEWLSGLSSL 190 (598)
Q Consensus 113 ~~L~~L~Ls~n~l~~~~~p~~~~~l~~L~~L~L~~n~l~~--~~p~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~~l~~L 190 (598)
++|++|++++|+++.. .+..+.++++|++|++++|.++. ..|..+..+++|++|++++|
T Consensus 28 ~~l~~L~L~~n~l~~i-~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n------------------ 88 (306)
T 2z66_A 28 SSATRLELESNKLQSL-PHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFN------------------ 88 (306)
T ss_dssp TTCCEEECCSSCCCCC-CTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCSC------------------
T ss_pred CCCCEEECCCCccCcc-CHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECCCC------------------
Confidence 4666666666666632 22335666666666666666652 22444445555555555554
Q ss_pred cEEEcCCCCCCCCcccchHhhhcCCCCCEEEcCCCCCCCCCCCCCcCCCCCccEEEccCCCCCCCcchhhhcCCCCCEEE
Q 037325 191 VYFNLGGADLSKAGAYWLEVFNKLHSFVELHLPNCNLPSLPLSFPSLNFASLQVLDLSNNDFNSTTPHWLFNITSLLCLD 270 (598)
Q Consensus 191 ~~L~l~~n~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~ 270 (598)
.+... +..+..+++|++|++++|.+++.+....+..+++|++|++++|.+.+..+..+..+++|++|+
T Consensus 89 --------~i~~l----~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ 156 (306)
T 2z66_A 89 --------GVITM----SSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLK 156 (306)
T ss_dssp --------SEEEE----EEEEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEE
T ss_pred --------ccccC----hhhcCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEE
Confidence 33322 223444555555555555555544323445556666666666666555555555666666666
Q ss_pred ccCCcccc-cCCccccCCCCccEEECcCCCcCccccchhhcCCCCCCEEecccccCCcccchhhhCCCCCCCCCCccEEE
Q 037325 271 LGSNDLQG-DIPDGFASLNSLQELDLSGNSFLGGQLSRNLGKLCNLRTMILSRNNISSEVSDFLDGLSECTNSILLEKLE 349 (598)
Q Consensus 271 l~~n~l~~-~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~~~~~~~L~~L~ 349 (598)
+++|.+.+ ..|..+..+++|++|++++|. +.+..|..+..+++|++|++++|.+++..+..+..++ +|++|+
T Consensus 157 l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~------~L~~L~ 229 (306)
T 2z66_A 157 MAGNSFQENFLPDIFTELRNLTFLDLSQCQ-LEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLN------SLQVLD 229 (306)
T ss_dssp CTTCEEGGGEECSCCTTCTTCCEEECTTSC-CCEECTTTTTTCTTCCEEECTTSCCSBCCSGGGTTCT------TCCEEE
T ss_pred CCCCccccccchhHHhhCcCCCEEECCCCC-cCCcCHHHhcCCCCCCEEECCCCccCccChhhccCcc------cCCEeE
Confidence 66666554 345555555566666666655 3444444555555555555555555544443343333 455555
Q ss_pred ccCccccccCccccCCCC-CCCEEEccCCcCC
Q 037325 350 LRFNQFTGILPISLGSLK-NLRHLVLWQNSFL 380 (598)
Q Consensus 350 Ls~n~l~~~~~~~l~~l~-~L~~L~ls~n~l~ 380 (598)
+++|.+++..+..+..++ +|++|++++|++.
T Consensus 230 L~~N~l~~~~~~~~~~~~~~L~~L~L~~N~~~ 261 (306)
T 2z66_A 230 YSLNHIMTSKKQELQHFPSSLAFLNLTQNDFA 261 (306)
T ss_dssp CTTSCCCBCSSSSCCCCCTTCCEEECTTCCEE
T ss_pred CCCCCCcccCHHHHHhhhccCCEEEccCCCee
Confidence 555555444444444442 4444444444443
|
| >3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} | Back alignment and structure |
|---|
Probab=99.95 E-value=3.9e-26 Score=244.22 Aligned_cols=267 Identities=22% Similarity=0.260 Sum_probs=175.6
Q ss_pred CccEEEccCCCCCCCcchhhhcCCCCCEEEccCCcccccCCccccCCCCccEEECcCCCcCccccchhhcCCCCCCEEec
Q 037325 241 SLQVLDLSNNDFNSTTPHWLFNITSLLCLDLGSNDLQGDIPDGFASLNSLQELDLSGNSFLGGQLSRNLGKLCNLRTMIL 320 (598)
Q Consensus 241 ~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~l~~l~~L~~L~l 320 (598)
++++|++++|.++ .+|..+. ++|+.|++++|.++ .+|. .+++|++|++++|.+ . .+|. .+++|++|++
T Consensus 41 ~l~~L~ls~n~L~-~lp~~l~--~~L~~L~L~~N~l~-~lp~---~l~~L~~L~Ls~N~l-~-~lp~---~l~~L~~L~L 108 (622)
T 3g06_A 41 GNAVLNVGESGLT-TLPDCLP--AHITTLVIPDNNLT-SLPA---LPPELRTLEVSGNQL-T-SLPV---LPPGLLELSI 108 (622)
T ss_dssp CCCEEECCSSCCS-CCCSCCC--TTCSEEEECSCCCS-CCCC---CCTTCCEEEECSCCC-S-CCCC---CCTTCCEEEE
T ss_pred CCcEEEecCCCcC-ccChhhC--CCCcEEEecCCCCC-CCCC---cCCCCCEEEcCCCcC-C-cCCC---CCCCCCEEEC
Confidence 5788888888887 4555443 67888888888877 4554 467788888888874 3 3444 5677888888
Q ss_pred ccccCCcccchhhhCCCCCCCCCCccEEEccCccccccCccccCCCCCCCEEEccCCcCCccchhhccCCCCCCEEeCcC
Q 037325 321 SRNNISSEVSDFLDGLSECTNSILLEKLELRFNQFTGILPISLGSLKNLRHLVLWQNSFLGSIPPSIGNLTLLKELYLAS 400 (598)
Q Consensus 321 ~~n~l~~~~~~~~~~l~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~ls~n~l~~~~~~~l~~l~~L~~L~l~~ 400 (598)
++|.+++... .+. +|+.|++++|++++ +|.. +++|++|++++|++++ +|. .+++|+.|++++
T Consensus 109 s~N~l~~l~~----~l~------~L~~L~L~~N~l~~-lp~~---l~~L~~L~Ls~N~l~~-l~~---~~~~L~~L~L~~ 170 (622)
T 3g06_A 109 FSNPLTHLPA----LPS------GLCKLWIFGNQLTS-LPVL---PPGLQELSVSDNQLAS-LPA---LPSELCKLWAYN 170 (622)
T ss_dssp CSCCCCCCCC----CCT------TCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCSC-CCC---CCTTCCEEECCS
T ss_pred cCCcCCCCCC----CCC------CcCEEECCCCCCCc-CCCC---CCCCCEEECcCCcCCC-cCC---ccCCCCEEECCC
Confidence 8887776433 222 67888888887774 4432 4778888888887774 333 346777888888
Q ss_pred CcCCcccCCCchhhhcCCCCCCEEEccCccCccccchHHHhcCCCCCEEEccCCcCcccCCCCcccCCCCEEEcccCcCc
Q 037325 401 NQMNGQKISDSYQHLKNQTELRTLVLNKARISDTISDWFWQLSLTLDELDVAYNELRGRVPNSLGFNFPAKVDLSFNNFE 480 (598)
Q Consensus 401 n~l~~~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~ls~n~~~~~~p~~~~~~~L~~l~ls~n~l~ 480 (598)
|.+++. + ..+++|+.|++++|++++... ..++|+.|++++|.++. +|..+ ..|+.|++++|+++
T Consensus 171 N~l~~l--~------~~~~~L~~L~Ls~N~l~~l~~-----~~~~L~~L~L~~N~l~~-l~~~~--~~L~~L~Ls~N~L~ 234 (622)
T 3g06_A 171 NQLTSL--P------MLPSGLQELSVSDNQLASLPT-----LPSELYKLWAYNNRLTS-LPALP--SGLKELIVSGNRLT 234 (622)
T ss_dssp SCCSCC--C------CCCTTCCEEECCSSCCSCCCC-----CCTTCCEEECCSSCCSS-CCCCC--TTCCEEECCSSCCS
T ss_pred CCCCCC--c------ccCCCCcEEECCCCCCCCCCC-----ccchhhEEECcCCcccc-cCCCC--CCCCEEEccCCccC
Confidence 877653 2 235677777777777765322 14567777777777763 33321 35667777777666
Q ss_pred ccCCCCCcCCcEEEccCCcccccCCchhhcccCCCCCccccCCCCeEeCcCCccccccchhccCCCCCCEEECCCCcCcc
Q 037325 481 GRLLLWSFNVTKLYLRDNSFSGLIPNDIGQNLPFLTDLGNLKQLITLVISNNNLSGEIPLLFSNISFLYILDMSNNSLSG 560 (598)
Q Consensus 481 ~~~~~~~~~L~~L~ls~n~l~~~~p~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ls~N~l~~ 560 (598)
+ +|..+++|+.|++++|+++ .+|. . +++|+.|+|++|.++ .+|..+.++++|+.|+|++|.+++
T Consensus 235 ~-lp~~l~~L~~L~Ls~N~L~-~lp~---~----------~~~L~~L~Ls~N~L~-~lp~~l~~l~~L~~L~L~~N~l~~ 298 (622)
T 3g06_A 235 S-LPVLPSELKELMVSGNRLT-SLPM---L----------PSGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSE 298 (622)
T ss_dssp C-CCCCCTTCCEEECCSSCCS-CCCC---C----------CTTCCEEECCSSCCC-SCCGGGGGSCTTCEEECCSCCCCH
T ss_pred c-CCCCCCcCcEEECCCCCCC-cCCc---c----------cccCcEEeCCCCCCC-cCCHHHhhccccCEEEecCCCCCC
Confidence 5 4455566777777777666 4444 1 456667777777766 666666667777777777777766
Q ss_pred ccchhccCC
Q 037325 561 STPESIGSL 569 (598)
Q Consensus 561 ~~p~~l~~l 569 (598)
.+|..+..+
T Consensus 299 ~~~~~l~~L 307 (622)
T 3g06_A 299 RTLQALREI 307 (622)
T ss_dssp HHHHHHHHH
T ss_pred cCHHHHHhc
Confidence 666655543
|
| >2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} | Back alignment and structure |
|---|
Probab=99.94 E-value=3.8e-27 Score=232.81 Aligned_cols=244 Identities=23% Similarity=0.259 Sum_probs=149.2
Q ss_pred CCcccEEecCC---------CCcEEEEEcCCCCCCCCCCcccCCCCCcceecCccccCCCCCCEEeCCCCCCCCC-Ccch
Q 037325 63 CSWSGVSCNNR---------TASVIKLNLNNPFRDSFGSFEDDAGHELGGEISPSLLQLKDLEYLDLSMNNFTGF-QVPE 132 (598)
Q Consensus 63 c~w~gv~c~~~---------~~~v~~L~L~~~~~~~~~~~~~~~~~~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~-~~p~ 132 (598)
|.|.+|.|++. ...++.|++++ +.+....+..+.++++|++|++++|.++.. ..+.
T Consensus 7 C~~~~l~c~~~~l~~ip~~~~~~l~~L~L~~--------------n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~ 72 (306)
T 2z66_A 7 CSGTEIRCNSKGLTSVPTGIPSSATRLELES--------------NKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQ 72 (306)
T ss_dssp EETTEEECCSSCCSSCCSCCCTTCCEEECCS--------------SCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEH
T ss_pred eCCCEEEcCCCCcccCCCCCCCCCCEEECCC--------------CccCccCHhHhhccccCCEEECCCCccCcccCccc
Confidence 78999999752 24688899988 677755555689999999999999998732 1256
Q ss_pred hccCCCCCCEEECcCCCCCcccchhccCCCCCCEEEccCCCCCCCccChhhhcCCCCCcEEEcCCCCCCCCcccchHhhh
Q 037325 133 FIGSLKELRYLNLSGSFFSGTIPQTLGNLSNLLYLDLNNFLDQSNQIDLEWLSGLSSLVYFNLGGADLSKAGAYWLEVFN 212 (598)
Q Consensus 133 ~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~ 212 (598)
.+..+++|++|++++|.+. .+|..+..+++|++|++++|.+..... ...+..+++|++|++++|.+.... +..+.
T Consensus 73 ~~~~~~~L~~L~Ls~n~i~-~l~~~~~~l~~L~~L~l~~n~l~~~~~-~~~~~~l~~L~~L~l~~n~l~~~~---~~~~~ 147 (306)
T 2z66_A 73 SDFGTTSLKYLDLSFNGVI-TMSSNFLGLEQLEHLDFQHSNLKQMSE-FSVFLSLRNLIYLDISHTHTRVAF---NGIFN 147 (306)
T ss_dssp HHHSCSCCCEEECCSCSEE-EEEEEEETCTTCCEEECTTSEEESSTT-TTTTTTCTTCCEEECTTSCCEECS---TTTTT
T ss_pred ccccccccCEEECCCCccc-cChhhcCCCCCCCEEECCCCccccccc-chhhhhccCCCEEECCCCcCCccc---hhhcc
Confidence 7778999999999999998 678888899999999999876533221 123566666777777666665543 34445
Q ss_pred cCCCCCEEEcCCCCCCCCCCCCCcCCCCCccEEEccCCCCCCCcchhhhcCCCCCEEEccCCcccccCCccccCCCCccE
Q 037325 213 KLHSFVELHLPNCNLPSLPLSFPSLNFASLQVLDLSNNDFNSTTPHWLFNITSLLCLDLGSNDLQGDIPDGFASLNSLQE 292 (598)
Q Consensus 213 ~l~~L~~L~l~~~~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~ 292 (598)
.+++|++|++++|.+++......+..+++|++|++++|++++..|..+..+++|++|++++|.+++..+..+..+++|++
T Consensus 148 ~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~ 227 (306)
T 2z66_A 148 GLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQV 227 (306)
T ss_dssp TCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCE
T ss_pred cCcCCCEEECCCCccccccchhHHhhCcCCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCccCccChhhccCcccCCE
Confidence 55555555555555543111123344455555555555554444444444555555555555544433334444444444
Q ss_pred EECcCCCcCccccchhhcCCC-CCCEEecccccCC
Q 037325 293 LDLSGNSFLGGQLSRNLGKLC-NLRTMILSRNNIS 326 (598)
Q Consensus 293 L~l~~n~~~~~~~~~~l~~l~-~L~~L~l~~n~l~ 326 (598)
|++++|. +.+..+..+..++ +|++|++++|.+.
T Consensus 228 L~L~~N~-l~~~~~~~~~~~~~~L~~L~L~~N~~~ 261 (306)
T 2z66_A 228 LDYSLNH-IMTSKKQELQHFPSSLAFLNLTQNDFA 261 (306)
T ss_dssp EECTTSC-CCBCSSSSCCCCCTTCCEEECTTCCEE
T ss_pred eECCCCC-CcccCHHHHHhhhccCCEEEccCCCee
Confidence 5554444 3333344444442 4444444444443
|
| >4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} | Back alignment and structure |
|---|
Probab=99.94 E-value=1.4e-26 Score=230.31 Aligned_cols=204 Identities=18% Similarity=0.212 Sum_probs=120.2
Q ss_pred CccEEEccCccccccCccccCCCCCCCEEEccCCcCCccchhhccCCCCCCEEeCcCCcCCcccCCCchh------hhcC
Q 037325 344 LLEKLELRFNQFTGILPISLGSLKNLRHLVLWQNSFLGSIPPSIGNLTLLKELYLASNQMNGQKISDSYQ------HLKN 417 (598)
Q Consensus 344 ~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~ls~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~------~l~~ 417 (598)
+|++|++++|.++ .+|..++.+++|++|++++|++. .+|..+..+++|++|++++|++.+.. |..+. .+..
T Consensus 105 ~L~~L~L~~n~l~-~lp~~~~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L~L~~n~~~~~~-p~~~~~~~~~~~~~~ 181 (328)
T 4fcg_A 105 HLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLRELSIRACPELTEL-PEPLASTDASGEHQG 181 (328)
T ss_dssp TCSEEEEESSCCC-CCCSCGGGGTTCSEEEEESCCCC-CCCGGGGGCTTCCEEEEEEETTCCCC-CSCSEEEC-CCCEEE
T ss_pred CCCEEECCCCCcc-chhHHHhccCCCCEEECCCCccc-cCcHHHhcCcCCCEEECCCCCCcccc-ChhHhhccchhhhcc
Confidence 3444444444444 33444444444444444444444 33444444444444444444443333 22111 1334
Q ss_pred CCCCCEEEccCccCccccchHHHhcCCCCCEEEccCCcCcccCCCCcccCCCCEEEcccCcCcccCCCCCcCCcEEEccC
Q 037325 418 QTELRTLVLNKARISDTISDWFWQLSLTLDELDVAYNELRGRVPNSLGFNFPAKVDLSFNNFEGRLLLWSFNVTKLYLRD 497 (598)
Q Consensus 418 ~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~ls~n~~~~~~p~~~~~~~L~~l~ls~n~l~~~~~~~~~~L~~L~ls~ 497 (598)
+++|++|++++|+++ .+|..+.. +++|++|++++|++++ +|..+. .+++|++|++++
T Consensus 182 l~~L~~L~L~~n~l~-~lp~~l~~-l~~L~~L~L~~N~l~~-l~~~l~--------------------~l~~L~~L~Ls~ 238 (328)
T 4fcg_A 182 LVNLQSLRLEWTGIR-SLPASIAN-LQNLKSLKIRNSPLSA-LGPAIH--------------------HLPKLEELDLRG 238 (328)
T ss_dssp STTCCEEEEEEECCC-CCCGGGGG-CTTCCEEEEESSCCCC-CCGGGG--------------------GCTTCCEEECTT
T ss_pred CCCCCEEECcCCCcC-cchHhhcC-CCCCCEEEccCCCCCc-Cchhhc--------------------cCCCCCEEECcC
Confidence 555666666665555 34444333 4556666666665553 222221 145677777777
Q ss_pred CcccccCCchhhcccCCCCCccccCCCCeEeCcCCccccccchhccCCCCCCEEECCCCcCccccchhccCCCCCCEEEc
Q 037325 498 NSFSGLIPNDIGQNLPFLTDLGNLKQLITLVISNNNLSGEIPLLFSNISFLYILDMSNNSLSGSTPESIGSLRTVKFLVL 577 (598)
Q Consensus 498 n~l~~~~p~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~l~~l~~L~~L~l 577 (598)
|++.+.+|..++. +++|+.|+|++|.+.+.+|..++++++|++|+|++|.+.+.+|..++++++|+.+++
T Consensus 239 n~~~~~~p~~~~~----------l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l~~L~~L~~l~l 308 (328)
T 4fcg_A 239 CTALRNYPPIFGG----------RAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILV 308 (328)
T ss_dssp CTTCCBCCCCTTC----------CCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCCGGGGGSCTTCEEEC
T ss_pred CcchhhhHHHhcC----------CCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhccHHHhhccCceEEeC
Confidence 7777777776665 778888888888888788888888888888888888888888888888888888888
Q ss_pred cCCCCc
Q 037325 578 RNNYLS 583 (598)
Q Consensus 578 ~~n~l~ 583 (598)
..+.+.
T Consensus 309 ~~~~~~ 314 (328)
T 4fcg_A 309 PPHLQA 314 (328)
T ss_dssp CGGGSC
T ss_pred CHHHHH
Confidence 776654
|
| >3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} | Back alignment and structure |
|---|
Probab=99.94 E-value=1.1e-27 Score=237.50 Aligned_cols=268 Identities=20% Similarity=0.180 Sum_probs=186.4
Q ss_pred CCEEEccCCcccccCCccccCCCCccEEECcCCCcCccccchhhcCCCCCCEEecccccCCcccchhhhCCCCCCCCCCc
Q 037325 266 LLCLDLGSNDLQGDIPDGFASLNSLQELDLSGNSFLGGQLSRNLGKLCNLRTMILSRNNISSEVSDFLDGLSECTNSILL 345 (598)
Q Consensus 266 L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~~~~~~~L 345 (598)
++..+++.+.+.......+..+++|++|++++|. +.+..+..+..+++|++|++++|.+.+..+ +..++ +|
T Consensus 12 l~i~~ls~~~l~~~~~~~~~~~~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~------~L 82 (317)
T 3o53_A 12 YKIEKVTDSSLKQALASLRQSAWNVKELDLSGNP-LSQISAADLAPFTKLELLNLSSNVLYETLD--LESLS------TL 82 (317)
T ss_dssp EEEESCCTTTHHHHHHHHHTTGGGCSEEECTTSC-CCCCCHHHHTTCTTCCEEECTTSCCEEEEE--ETTCT------TC
T ss_pred eeEeeccccchhhhHHHHhccCCCCCEEECcCCc-cCcCCHHHhhCCCcCCEEECCCCcCCcchh--hhhcC------CC
Confidence 3444555555554333444556677888888877 555566677777777888877777766544 55555 67
Q ss_pred cEEEccCccccccCccccCCCCCCCEEEccCCcCCccchhhccCCCCCCEEeCcCCcCCcccCCCchhhhcCCCCCCEEE
Q 037325 346 EKLELRFNQFTGILPISLGSLKNLRHLVLWQNSFLGSIPPSIGNLTLLKELYLASNQMNGQKISDSYQHLKNQTELRTLV 425 (598)
Q Consensus 346 ~~L~Ls~n~l~~~~~~~l~~l~~L~~L~ls~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~~~~L~~L~ 425 (598)
++|++++|.+++.. ..++|++|++++|++++..+. .+++|++|++++|.+++.. +. .+..+++|+.|+
T Consensus 83 ~~L~Ls~n~l~~l~-----~~~~L~~L~l~~n~l~~~~~~---~~~~L~~L~l~~N~l~~~~-~~---~~~~l~~L~~L~ 150 (317)
T 3o53_A 83 RTLDLNNNYVQELL-----VGPSIETLHAANNNISRVSCS---RGQGKKNIYLANNKITMLR-DL---DEGCRSRVQYLD 150 (317)
T ss_dssp CEEECCSSEEEEEE-----ECTTCCEEECCSSCCSEEEEC---CCSSCEEEECCSSCCCSGG-GB---CTGGGSSEEEEE
T ss_pred CEEECcCCcccccc-----CCCCcCEEECCCCccCCcCcc---ccCCCCEEECCCCCCCCcc-ch---hhhccCCCCEEE
Confidence 77777777776432 236777777777777654433 3566777777777776554 22 245566777777
Q ss_pred ccCccCccccchHHHhcCCCCCEEEccCCcCcccCCCCcccCCCCEEEcccCcCcccCCCCCcCCcEEEccCCcccccCC
Q 037325 426 LNKARISDTISDWFWQLSLTLDELDVAYNELRGRVPNSLGFNFPAKVDLSFNNFEGRLLLWSFNVTKLYLRDNSFSGLIP 505 (598)
Q Consensus 426 l~~n~l~~~~~~~~~~~~~~L~~L~ls~n~~~~~~p~~~~~~~L~~l~ls~n~l~~~~~~~~~~L~~L~ls~n~l~~~~p 505 (598)
+++|++++..+..+...+++|++|++++|.+++. +.. ..+++|++|++++|++++ +|
T Consensus 151 Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~-~~~---------------------~~l~~L~~L~Ls~N~l~~-l~ 207 (317)
T 3o53_A 151 LKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDV-KGQ---------------------VVFAKLKTLDLSSNKLAF-MG 207 (317)
T ss_dssp CTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEE-ECC---------------------CCCTTCCEEECCSSCCCE-EC
T ss_pred CCCCCCCcccHHHHhhccCcCCEEECCCCcCccc-ccc---------------------cccccCCEEECCCCcCCc-ch
Confidence 7777777666655544456677777777766533 110 125688999999999984 55
Q ss_pred chhhcccCCCCCccccCCCCeEeCcCCccccccchhccCCCCCCEEECCCCcCc-cccchhccCCCCCCEEEccCC-CCc
Q 037325 506 NDIGQNLPFLTDLGNLKQLITLVISNNNLSGEIPLLFSNISFLYILDMSNNSLS-GSTPESIGSLRTVKFLVLRNN-YLS 583 (598)
Q Consensus 506 ~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ls~N~l~-~~~p~~l~~l~~L~~L~l~~n-~l~ 583 (598)
..+.. +++|+.|+|++|.++ .+|..+..+++|+.|++++|.++ +.+|..+..+++|+.+++++| .+.
T Consensus 208 ~~~~~----------l~~L~~L~L~~N~l~-~l~~~~~~l~~L~~L~l~~N~~~~~~~~~~~~~~~~L~~l~l~~~~~l~ 276 (317)
T 3o53_A 208 PEFQS----------AAGVTWISLRNNKLV-LIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLT 276 (317)
T ss_dssp GGGGG----------GTTCSEEECTTSCCC-EECTTCCCCTTCCEEECTTCCCBHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred hhhcc----------cCcccEEECcCCccc-chhhHhhcCCCCCEEEccCCCccCcCHHHHHhccccceEEECCCchhcc
Confidence 55666 899999999999998 68888999999999999999998 778888999999999999844 466
Q ss_pred ccCCc
Q 037325 584 GKLPL 588 (598)
Q Consensus 584 g~~P~ 588 (598)
|..|.
T Consensus 277 ~~~~~ 281 (317)
T 3o53_A 277 GQNEE 281 (317)
T ss_dssp SSSSC
T ss_pred CCchh
Confidence 65554
|
| >3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A | Back alignment and structure |
|---|
Probab=99.94 E-value=7.9e-26 Score=235.87 Aligned_cols=228 Identities=22% Similarity=0.231 Sum_probs=134.4
Q ss_pred CCCCEEeCCCCCCCCCCcchhccCCCCCCEEECcCCCCCcccchhccCCCCCCEEEccCCCCCCCccChhhhcCCCCCcE
Q 037325 113 KDLEYLDLSMNNFTGFQVPEFIGSLKELRYLNLSGSFFSGTIPQTLGNLSNLLYLDLNNFLDQSNQIDLEWLSGLSSLVY 192 (598)
Q Consensus 113 ~~L~~L~Ls~n~l~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~~l~~L~~ 192 (598)
+++++|+|++|++++. .|..+.++++|++|+|++|++++..|..|.++++|++|++++|.+... ....+.++++|++
T Consensus 75 ~~l~~L~L~~n~i~~~-~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~--~~~~~~~l~~L~~ 151 (452)
T 3zyi_A 75 SNTRYLNLMENNIQMI-QADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLTVI--PSGAFEYLSKLRE 151 (452)
T ss_dssp TTCSEEECCSSCCCEE-CTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSBC--CTTTSSSCTTCCE
T ss_pred CCccEEECcCCcCceE-CHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCCcCCcc--ChhhhcccCCCCE
Confidence 4556666666666543 445556666666666666666555555566666666666666554322 1233555666666
Q ss_pred EEcCCCCCCCCcccchHhhhcCCCCCEEEcCCC-CCCCCCCCCCcCCCCCccEEEccCCCCCCCcchhhhcCCCCCEEEc
Q 037325 193 FNLGGADLSKAGAYWLEVFNKLHSFVELHLPNC-NLPSLPLSFPSLNFASLQVLDLSNNDFNSTTPHWLFNITSLLCLDL 271 (598)
Q Consensus 193 L~l~~n~~~~~~~~~~~~~~~l~~L~~L~l~~~-~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l 271 (598)
|++++|.+.... ...+..+++|++|++++| .+..++. ..+..+++|++|++++|++++. | .+..+++|+.|++
T Consensus 152 L~L~~N~l~~~~---~~~~~~l~~L~~L~l~~~~~l~~i~~-~~~~~l~~L~~L~L~~n~l~~~-~-~~~~l~~L~~L~L 225 (452)
T 3zyi_A 152 LWLRNNPIESIP---SYAFNRVPSLMRLDLGELKKLEYISE-GAFEGLFNLKYLNLGMCNIKDM-P-NLTPLVGLEELEM 225 (452)
T ss_dssp EECCSCCCCEEC---TTTTTTCTTCCEEECCCCTTCCEECT-TTTTTCTTCCEEECTTSCCSSC-C-CCTTCTTCCEEEC
T ss_pred EECCCCCcceeC---HhHHhcCCcccEEeCCCCCCccccCh-hhccCCCCCCEEECCCCccccc-c-cccccccccEEEC
Confidence 666666665443 345556666666666663 3333332 4455666666666666666543 2 2556666666666
Q ss_pred cCCcccccCCccccCCCCccEEECcCCCcCccccchhhcCCCCCCEEecccccCCcccchhhhCCCCCCCCCCccEEEcc
Q 037325 272 GSNDLQGDIPDGFASLNSLQELDLSGNSFLGGQLSRNLGKLCNLRTMILSRNNISSEVSDFLDGLSECTNSILLEKLELR 351 (598)
Q Consensus 272 ~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~~~~~~~L~~L~Ls 351 (598)
++|.+++..|..|..+++|+.|++++|. +....+..+..+++|+.|++++|++++..+..+..++ +|++|+++
T Consensus 226 s~N~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~------~L~~L~L~ 298 (452)
T 3zyi_A 226 SGNHFPEIRPGSFHGLSSLKKLWVMNSQ-VSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPLR------YLVELHLH 298 (452)
T ss_dssp TTSCCSEECGGGGTTCTTCCEEECTTSC-CCEECTTTTTTCTTCCEEECCSSCCSCCCTTSSTTCT------TCCEEECC
T ss_pred cCCcCcccCcccccCccCCCEEEeCCCc-CceECHHHhcCCCCCCEEECCCCcCCccChHHhcccc------CCCEEEcc
Confidence 6666666556666666666666666666 4555556666666666666666666665555555555 66677776
Q ss_pred Ccccc
Q 037325 352 FNQFT 356 (598)
Q Consensus 352 ~n~l~ 356 (598)
+|.+.
T Consensus 299 ~Np~~ 303 (452)
T 3zyi_A 299 HNPWN 303 (452)
T ss_dssp SSCEE
T ss_pred CCCcC
Confidence 66554
|
| >3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} | Back alignment and structure |
|---|
Probab=99.94 E-value=3.4e-25 Score=236.95 Aligned_cols=269 Identities=23% Similarity=0.267 Sum_probs=200.5
Q ss_pred CCCCEEEcCCCCCCCCCCCCCcCCCCCccEEEccCCCCCCCcchhhhcCCCCCEEEccCCcccccCCccccCCCCccEEE
Q 037325 215 HSFVELHLPNCNLPSLPLSFPSLNFASLQVLDLSNNDFNSTTPHWLFNITSLLCLDLGSNDLQGDIPDGFASLNSLQELD 294 (598)
Q Consensus 215 ~~L~~L~l~~~~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~ 294 (598)
.+++.|++++|.++.++.... ++|++|++++|.++. +|. .+++|++|++++|.++ .+|. .+++|++|+
T Consensus 40 ~~l~~L~ls~n~L~~lp~~l~----~~L~~L~L~~N~l~~-lp~---~l~~L~~L~Ls~N~l~-~lp~---~l~~L~~L~ 107 (622)
T 3g06_A 40 NGNAVLNVGESGLTTLPDCLP----AHITTLVIPDNNLTS-LPA---LPPELRTLEVSGNQLT-SLPV---LPPGLLELS 107 (622)
T ss_dssp HCCCEEECCSSCCSCCCSCCC----TTCSEEEECSCCCSC-CCC---CCTTCCEEEECSCCCS-CCCC---CCTTCCEEE
T ss_pred CCCcEEEecCCCcCccChhhC----CCCcEEEecCCCCCC-CCC---cCCCCCEEEcCCCcCC-cCCC---CCCCCCEEE
Confidence 358888888888887765222 788888998888874 444 5688888899888887 4554 668888888
Q ss_pred CcCCCcCccccchhhcCCCCCCEEecccccCCcccchhhhCCCCCCCCCCccEEEccCccccccCccccCCCCCCCEEEc
Q 037325 295 LSGNSFLGGQLSRNLGKLCNLRTMILSRNNISSEVSDFLDGLSECTNSILLEKLELRFNQFTGILPISLGSLKNLRHLVL 374 (598)
Q Consensus 295 l~~n~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~l 374 (598)
+++|.+ .+ +|. .+++|+.|++++|+++.... . ++ +|++|++++|.+++ +|. .+++|+.|++
T Consensus 108 Ls~N~l-~~-l~~---~l~~L~~L~L~~N~l~~lp~-~---l~------~L~~L~Ls~N~l~~-l~~---~~~~L~~L~L 168 (622)
T 3g06_A 108 IFSNPL-TH-LPA---LPSGLCKLWIFGNQLTSLPV-L---PP------GLQELSVSDNQLAS-LPA---LPSELCKLWA 168 (622)
T ss_dssp ECSCCC-CC-CCC---CCTTCCEEECCSSCCSCCCC-C---CT------TCCEEECCSSCCSC-CCC---CCTTCCEEEC
T ss_pred CcCCcC-CC-CCC---CCCCcCEEECCCCCCCcCCC-C---CC------CCCEEECcCCcCCC-cCC---ccCCCCEEEC
Confidence 888884 33 343 56788888888888776432 1 23 78888998888875 343 3467888888
Q ss_pred cCCcCCccchhhccCCCCCCEEeCcCCcCCcccCCCchhhhcCCCCCCEEEccCccCccccchHHHhcCCCCCEEEccCC
Q 037325 375 WQNSFLGSIPPSIGNLTLLKELYLASNQMNGQKISDSYQHLKNQTELRTLVLNKARISDTISDWFWQLSLTLDELDVAYN 454 (598)
Q Consensus 375 s~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~ls~n 454 (598)
++|.+++ +| ..+++|+.|++++|.+++.. . ..++|+.|++++|.++.... .+++|++|++++|
T Consensus 169 ~~N~l~~-l~---~~~~~L~~L~Ls~N~l~~l~--~------~~~~L~~L~L~~N~l~~l~~-----~~~~L~~L~Ls~N 231 (622)
T 3g06_A 169 YNNQLTS-LP---MLPSGLQELSVSDNQLASLP--T------LPSELYKLWAYNNRLTSLPA-----LPSGLKELIVSGN 231 (622)
T ss_dssp CSSCCSC-CC---CCCTTCCEEECCSSCCSCCC--C------CCTTCCEEECCSSCCSSCCC-----CCTTCCEEECCSS
T ss_pred CCCCCCC-Cc---ccCCCCcEEECCCCCCCCCC--C------ccchhhEEECcCCcccccCC-----CCCCCCEEEccCC
Confidence 8888884 55 45678888899888887642 2 23678888888888875432 2467888899888
Q ss_pred cCcccCCCCcccCCCCEEEcccCcCcccCCCCCcCCcEEEccCCcccccCCchhhcccCCCCCccccCCCCeEeCcCCcc
Q 037325 455 ELRGRVPNSLGFNFPAKVDLSFNNFEGRLLLWSFNVTKLYLRDNSFSGLIPNDIGQNLPFLTDLGNLKQLITLVISNNNL 534 (598)
Q Consensus 455 ~~~~~~p~~~~~~~L~~l~ls~n~l~~~~~~~~~~L~~L~ls~n~l~~~~p~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l 534 (598)
++++ +|.. ...|+.|++++|+++ .+|..+++|+.|++++|+++ .+|..+.. +++|+.|+|++|.+
T Consensus 232 ~L~~-lp~~--l~~L~~L~Ls~N~L~-~lp~~~~~L~~L~Ls~N~L~-~lp~~l~~----------l~~L~~L~L~~N~l 296 (622)
T 3g06_A 232 RLTS-LPVL--PSELKELMVSGNRLT-SLPMLPSGLLSLSVYRNQLT-RLPESLIH----------LSSETTVNLEGNPL 296 (622)
T ss_dssp CCSC-CCCC--CTTCCEEECCSSCCS-CCCCCCTTCCEEECCSSCCC-SCCGGGGG----------SCTTCEEECCSCCC
T ss_pred ccCc-CCCC--CCcCcEEECCCCCCC-cCCcccccCcEEeCCCCCCC-cCCHHHhh----------ccccCEEEecCCCC
Confidence 8875 4421 237888889888887 45667788888999998888 77877776 88888999999988
Q ss_pred ccccchhccCCC
Q 037325 535 SGEIPLLFSNIS 546 (598)
Q Consensus 535 ~~~~p~~~~~l~ 546 (598)
++.+|..+.+++
T Consensus 297 ~~~~~~~l~~L~ 308 (622)
T 3g06_A 297 SERTLQALREIT 308 (622)
T ss_dssp CHHHHHHHHHHH
T ss_pred CCcCHHHHHhcc
Confidence 888888776554
|
| >3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.94 E-value=2.3e-25 Score=231.52 Aligned_cols=229 Identities=22% Similarity=0.250 Sum_probs=125.8
Q ss_pred CCCCEEeCCCCCCCCCCcchhccCCCCCCEEECcCCCCCcccchhccCCCCCCEEEccCCCCCCCccChhhhcCCCCCcE
Q 037325 113 KDLEYLDLSMNNFTGFQVPEFIGSLKELRYLNLSGSFFSGTIPQTLGNLSNLLYLDLNNFLDQSNQIDLEWLSGLSSLVY 192 (598)
Q Consensus 113 ~~L~~L~Ls~n~l~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~~l~~L~~ 192 (598)
+++++|+|++|+++.. .+..+.++++|++|+|++|.+++..+..|.++++|++|++++|.+.... ...+.++++|++
T Consensus 64 ~~l~~L~L~~n~i~~~-~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~--~~~~~~l~~L~~ 140 (440)
T 3zyj_A 64 TNTRLLNLHENQIQII-KVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLTTIP--NGAFVYLSKLKE 140 (440)
T ss_dssp TTCSEEECCSCCCCEE-CTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSSCCSSCC--TTTSCSCSSCCE
T ss_pred CCCcEEEccCCcCCee-CHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCCcCCeeC--HhHhhccccCce
Confidence 6778888888888764 5567778888888888888887666667777777777777776543221 123445555555
Q ss_pred EEcCCCCCCCCcccchHhhhcCCCCCEEEcCCCCCCCCCCCCCcCCCCCccEEEccCCCCCCCcchhhhcCCCCCEEEcc
Q 037325 193 FNLGGADLSKAGAYWLEVFNKLHSFVELHLPNCNLPSLPLSFPSLNFASLQVLDLSNNDFNSTTPHWLFNITSLLCLDLG 272 (598)
Q Consensus 193 L~l~~n~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~ 272 (598)
|++++|.+.... ...+..+++|++|++++|. .+....+..+.++++|++|+++
T Consensus 141 L~L~~N~i~~~~---~~~~~~l~~L~~L~l~~~~------------------------~l~~i~~~~~~~l~~L~~L~L~ 193 (440)
T 3zyj_A 141 LWLRNNPIESIP---SYAFNRIPSLRRLDLGELK------------------------RLSYISEGAFEGLSNLRYLNLA 193 (440)
T ss_dssp EECCSCCCCEEC---TTTTTTCTTCCEEECCCCT------------------------TCCEECTTTTTTCSSCCEEECT
T ss_pred eeCCCCcccccC---HHHhhhCcccCEeCCCCCC------------------------CcceeCcchhhcccccCeecCC
Confidence 555555554433 2234444444444444422 2221222234444445555555
Q ss_pred CCcccccCCccccCCCCccEEECcCCCcCccccchhhcCCCCCCEEecccccCCcccchhhhCCCCCCCCCCccEEEccC
Q 037325 273 SNDLQGDIPDGFASLNSLQELDLSGNSFLGGQLSRNLGKLCNLRTMILSRNNISSEVSDFLDGLSECTNSILLEKLELRF 352 (598)
Q Consensus 273 ~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~~~~~~~L~~L~Ls~ 352 (598)
+|.++ .+| .+..+++|++|++++|. +.+..+..+..+++|++|++++|++.+..+..+..++ +|++|++++
T Consensus 194 ~n~l~-~~~-~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~------~L~~L~L~~ 264 (440)
T 3zyj_A 194 MCNLR-EIP-NLTPLIKLDELDLSGNH-LSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQ------SLVEINLAH 264 (440)
T ss_dssp TSCCS-SCC-CCTTCSSCCEEECTTSC-CCEECTTTTTTCTTCCEEECTTCCCCEECTTSSTTCT------TCCEEECTT
T ss_pred CCcCc-ccc-ccCCCcccCEEECCCCc-cCccChhhhccCccCCEEECCCCceeEEChhhhcCCC------CCCEEECCC
Confidence 44444 222 24445555555555555 3444445555555555555555555555554444444 555555555
Q ss_pred ccccccCccccCCCCCCCEEEccCCcCC
Q 037325 353 NQFTGILPISLGSLKNLRHLVLWQNSFL 380 (598)
Q Consensus 353 n~l~~~~~~~l~~l~~L~~L~ls~n~l~ 380 (598)
|++++..+..+..+++|+.|++++|.+.
T Consensus 265 N~l~~~~~~~~~~l~~L~~L~L~~Np~~ 292 (440)
T 3zyj_A 265 NNLTLLPHDLFTPLHHLERIHLHHNPWN 292 (440)
T ss_dssp SCCCCCCTTTTSSCTTCCEEECCSSCEE
T ss_pred CCCCccChhHhccccCCCEEEcCCCCcc
Confidence 5555444445555555666666655543
|
| >1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.93 E-value=2.1e-27 Score=235.04 Aligned_cols=207 Identities=22% Similarity=0.204 Sum_probs=106.1
Q ss_pred CCCCCCEEecccccCCcccchhh--hCCCCCCCCCCccEEEccCccccccCccccCCC-----CCCCEEEccCCcCCccc
Q 037325 311 KLCNLRTMILSRNNISSEVSDFL--DGLSECTNSILLEKLELRFNQFTGILPISLGSL-----KNLRHLVLWQNSFLGSI 383 (598)
Q Consensus 311 ~l~~L~~L~l~~n~l~~~~~~~~--~~l~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~l-----~~L~~L~ls~n~l~~~~ 383 (598)
.+++|++|++++|++++..|..+ ..++ +|++|++++|.+++. |..++.+ ++|++|++++|++.+..
T Consensus 93 ~l~~L~~L~L~~n~l~~~~~~~~~~~~l~------~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~~~~ 165 (312)
T 1wwl_A 93 GISGLQELTLENLEVTGTAPPPLLEATGP------DLNILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAHSLNFS 165 (312)
T ss_dssp TTSCCCEEEEEEEBCBSCCCCCSSSCCSC------CCSEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCSCCCCC
T ss_pred CcCCccEEEccCCcccchhHHHHHHhcCC------CccEEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCCCccch
Confidence 34455555555555544444332 3333 455555555555543 4333333 55555555555555444
Q ss_pred hhhccCCCCCCEEeCcCCcCCcccC-CCchhhhcCCCCCCEEEccCccCcc--ccchHHHhcCCCCCEEEccCCcCcccC
Q 037325 384 PPSIGNLTLLKELYLASNQMNGQKI-SDSYQHLKNQTELRTLVLNKARISD--TISDWFWQLSLTLDELDVAYNELRGRV 460 (598)
Q Consensus 384 ~~~l~~l~~L~~L~l~~n~l~~~~~-~~~~~~l~~~~~L~~L~l~~n~l~~--~~~~~~~~~~~~L~~L~ls~n~~~~~~ 460 (598)
+..+..+++|++|++++|++.+... +.. ..+..+++|++|++++|++++ ..+..+...+++|++|++++|++
T Consensus 166 ~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~-~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l---- 240 (312)
T 1wwl_A 166 CEQVRVFPALSTLDLSDNPELGERGLISA-LCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSL---- 240 (312)
T ss_dssp TTTCCCCSSCCEEECCSCTTCHHHHHHHH-SCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCC----
T ss_pred HHHhccCCCCCEEECCCCCcCcchHHHHH-HHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcC----
Confidence 4555555555555555555443210 000 011444555555555555542 12222222234444444444444
Q ss_pred CCCcccCCCCEEEcccCcCcccCCCCCcCCcEEEccCCcccccCCc-hhhcccCCCCCccccCCCCeEeCcCCccccccc
Q 037325 461 PNSLGFNFPAKVDLSFNNFEGRLLLWSFNVTKLYLRDNSFSGLIPN-DIGQNLPFLTDLGNLKQLITLVISNNNLSGEIP 539 (598)
Q Consensus 461 p~~~~~~~L~~l~ls~n~l~~~~~~~~~~L~~L~ls~n~l~~~~p~-~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p 539 (598)
++.+|. .+. .+++|+.|+|++|.++ .+|
T Consensus 241 ----------------------------------------~~~~~~~~~~----------~l~~L~~L~Ls~N~l~-~ip 269 (312)
T 1wwl_A 241 ----------------------------------------RDAAGAPSCD----------WPSQLNSLNLSFTGLK-QVP 269 (312)
T ss_dssp ----------------------------------------CSSCCCSCCC----------CCTTCCEEECTTSCCS-SCC
T ss_pred ----------------------------------------Ccccchhhhh----------hcCCCCEEECCCCccC-hhh
Confidence 433321 111 1566777777777776 666
Q ss_pred hhccCCCCCCEEECCCCcCccccchhccCCCCCCEEEccCCCCcc
Q 037325 540 LLFSNISFLYILDMSNNSLSGSTPESIGSLRTVKFLVLRNNYLSG 584 (598)
Q Consensus 540 ~~~~~l~~L~~L~ls~N~l~~~~p~~l~~l~~L~~L~l~~n~l~g 584 (598)
..+. ++|++|++++|++++. |. +..+++|++|++++|++++
T Consensus 270 ~~~~--~~L~~L~Ls~N~l~~~-p~-~~~l~~L~~L~L~~N~l~~ 310 (312)
T 1wwl_A 270 KGLP--AKLSVLDLSYNRLDRN-PS-PDELPQVGNLSLKGNPFLD 310 (312)
T ss_dssp SSCC--SEEEEEECCSSCCCSC-CC-TTTSCEEEEEECTTCTTTC
T ss_pred hhcc--CCceEEECCCCCCCCC-hh-HhhCCCCCEEeccCCCCCC
Confidence 6655 6777777777777754 55 6777777777777777764
|
| >3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.93 E-value=5.2e-25 Score=228.87 Aligned_cols=248 Identities=23% Similarity=0.258 Sum_probs=137.8
Q ss_pred CCEEEccCCcccccCCccccCCCCccEEECcCCCcCccccchhhcCCCCCCEEecccccCCcccchhhhCCCCCCCCCCc
Q 037325 266 LLCLDLGSNDLQGDIPDGFASLNSLQELDLSGNSFLGGQLSRNLGKLCNLRTMILSRNNISSEVSDFLDGLSECTNSILL 345 (598)
Q Consensus 266 L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~~~~~~~L 345 (598)
...++..+..++ .+|..+. ++++.|++++|. +....+..|..+++|++|++++|.+.+..+..|..++ +|
T Consensus 45 ~~~v~c~~~~l~-~iP~~~~--~~l~~L~L~~n~-i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~------~L 114 (440)
T 3zyj_A 45 FSKVICVRKNLR-EVPDGIS--TNTRLLNLHENQ-IQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLA------NL 114 (440)
T ss_dssp SCEEECCSCCCS-SCCSCCC--TTCSEEECCSCC-CCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCS------SC
T ss_pred CCEEEeCCCCcC-cCCCCCC--CCCcEEEccCCc-CCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCc------cC
Confidence 455666665555 4454333 456666666666 4444445556666666666666665555555555554 55
Q ss_pred cEEEccCccccccCccccCCCCCCCEEEccCCcCCccchhhccCCCCCCEEeCcCCcCCcccCCCchhhhcCCCCCCEEE
Q 037325 346 EKLELRFNQFTGILPISLGSLKNLRHLVLWQNSFLGSIPPSIGNLTLLKELYLASNQMNGQKISDSYQHLKNQTELRTLV 425 (598)
Q Consensus 346 ~~L~Ls~n~l~~~~~~~l~~l~~L~~L~ls~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~~~~L~~L~ 425 (598)
++|++++|++++..+..+..+++|++|++++|++.+..+..+..+++|++|++++|...+.+ +. ..+.+
T Consensus 115 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i-~~--~~~~~-------- 183 (440)
T 3zyj_A 115 NTLELFDNRLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYI-SE--GAFEG-------- 183 (440)
T ss_dssp CEEECCSSCCSSCCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEE-CT--TTTTT--------
T ss_pred CEEECCCCcCCeeCHhHhhccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCccee-Cc--chhhc--------
Confidence 56666655555444444555555555555555555444444555555555555553322222 11 11333
Q ss_pred ccCccCccccchHHHhcCCCCCEEEccCCcCcccCCCCcccCCCCEEEcccCcCcccCCCCCcCCcEEEccCCcccccCC
Q 037325 426 LNKARISDTISDWFWQLSLTLDELDVAYNELRGRVPNSLGFNFPAKVDLSFNNFEGRLLLWSFNVTKLYLRDNSFSGLIP 505 (598)
Q Consensus 426 l~~n~l~~~~~~~~~~~~~~L~~L~ls~n~~~~~~p~~~~~~~L~~l~ls~n~l~~~~~~~~~~L~~L~ls~n~l~~~~p 505 (598)
+++|++|++++|+++. +|. + ..+++|++|++++|++++..|
T Consensus 184 -----------------l~~L~~L~L~~n~l~~-~~~-~--------------------~~l~~L~~L~Ls~N~l~~~~~ 224 (440)
T 3zyj_A 184 -----------------LSNLRYLNLAMCNLRE-IPN-L--------------------TPLIKLDELDLSGNHLSAIRP 224 (440)
T ss_dssp -----------------CSSCCEEECTTSCCSS-CCC-C--------------------TTCSSCCEEECTTSCCCEECT
T ss_pred -----------------ccccCeecCCCCcCcc-ccc-c--------------------CCCcccCEEECCCCccCccCh
Confidence 4445555555554441 221 0 113456666666666665555
Q ss_pred chhhcccCCCCCccccCCCCeEeCcCCccccccchhccCCCCCCEEECCCCcCccccchhccCCCCCCEEEccCCCCc
Q 037325 506 NDIGQNLPFLTDLGNLKQLITLVISNNNLSGEIPLLFSNISFLYILDMSNNSLSGSTPESIGSLRTVKFLVLRNNYLS 583 (598)
Q Consensus 506 ~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~l~~l~~L~~L~l~~n~l~ 583 (598)
..+.. +++|+.|+|++|.+++..|..|.++++|++|+|++|++++..+..+..+++|+.|++++|++.
T Consensus 225 ~~~~~----------l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~ 292 (440)
T 3zyj_A 225 GSFQG----------LMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHNPWN 292 (440)
T ss_dssp TTTTT----------CTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCCCCCCTTTTSSCTTCCEEECCSSCEE
T ss_pred hhhcc----------CccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCCCCccChhHhccccCCCEEEcCCCCcc
Confidence 55544 666777777777776666666667777777777777776555555666677777777777653
|
| >3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A | Back alignment and structure |
|---|
Probab=99.93 E-value=5.2e-25 Score=229.70 Aligned_cols=248 Identities=23% Similarity=0.253 Sum_probs=138.9
Q ss_pred CCEEEccCCcccccCCccccCCCCccEEECcCCCcCccccchhhcCCCCCCEEecccccCCcccchhhhCCCCCCCCCCc
Q 037325 266 LLCLDLGSNDLQGDIPDGFASLNSLQELDLSGNSFLGGQLSRNLGKLCNLRTMILSRNNISSEVSDFLDGLSECTNSILL 345 (598)
Q Consensus 266 L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~~~~~~~L 345 (598)
...++.++..++ .+|..+. +++++|++++|. +.+..+..|..+++|++|++++|.+.+..+..+..++ +|
T Consensus 56 ~~~v~c~~~~l~-~iP~~~~--~~l~~L~L~~n~-i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~------~L 125 (452)
T 3zyi_A 56 FSKVVCTRRGLS-EVPQGIP--SNTRYLNLMENN-IQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLA------SL 125 (452)
T ss_dssp SCEEECCSSCCS-SCCSCCC--TTCSEEECCSSC-CCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCT------TC
T ss_pred CcEEEECCCCcC-ccCCCCC--CCccEEECcCCc-CceECHHHcCCCCCCCEEECCCCccCCcChhhccCcc------cC
Confidence 345555555554 3443332 455555555555 3444445555555555555555555554444444444 45
Q ss_pred cEEEccCccccccCccccCCCCCCCEEEccCCcCCccchhhccCCCCCCEEeCcCCcCCcccCCCchhhhcCCCCCCEEE
Q 037325 346 EKLELRFNQFTGILPISLGSLKNLRHLVLWQNSFLGSIPPSIGNLTLLKELYLASNQMNGQKISDSYQHLKNQTELRTLV 425 (598)
Q Consensus 346 ~~L~Ls~n~l~~~~~~~l~~l~~L~~L~ls~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~~~~L~~L~ 425 (598)
++|++++|.+++..+..+..+++|++|++++|++.+..+..+..+++|++|++++|...
T Consensus 126 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l--------------------- 184 (452)
T 3zyi_A 126 NTLELFDNWLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKL--------------------- 184 (452)
T ss_dssp CEEECCSSCCSBCCTTTSSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTC---------------------
T ss_pred CEEECCCCcCCccChhhhcccCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCc---------------------
Confidence 55555555555444444445555555555555554333334444555555555443222
Q ss_pred ccCccCccccchHHHhcCCCCCEEEccCCcCcccCCCCcccCCCCEEEcccCcCcccCCCCCcCCcEEEccCCcccccCC
Q 037325 426 LNKARISDTISDWFWQLSLTLDELDVAYNELRGRVPNSLGFNFPAKVDLSFNNFEGRLLLWSFNVTKLYLRDNSFSGLIP 505 (598)
Q Consensus 426 l~~n~l~~~~~~~~~~~~~~L~~L~ls~n~~~~~~p~~~~~~~L~~l~ls~n~l~~~~~~~~~~L~~L~ls~n~l~~~~p 505 (598)
+.++...+..+++|++|++++|++++. |. + ..+++|++|++++|++++..|
T Consensus 185 -------~~i~~~~~~~l~~L~~L~L~~n~l~~~-~~-~--------------------~~l~~L~~L~Ls~N~l~~~~~ 235 (452)
T 3zyi_A 185 -------EYISEGAFEGLFNLKYLNLGMCNIKDM-PN-L--------------------TPLVGLEELEMSGNHFPEIRP 235 (452)
T ss_dssp -------CEECTTTTTTCTTCCEEECTTSCCSSC-CC-C--------------------TTCTTCCEEECTTSCCSEECG
T ss_pred -------cccChhhccCCCCCCEEECCCCccccc-cc-c--------------------cccccccEEECcCCcCcccCc
Confidence 222221112244555555555555421 21 0 123467777777777776666
Q ss_pred chhhcccCCCCCccccCCCCeEeCcCCccccccchhccCCCCCCEEECCCCcCccccchhccCCCCCCEEEccCCCCc
Q 037325 506 NDIGQNLPFLTDLGNLKQLITLVISNNNLSGEIPLLFSNISFLYILDMSNNSLSGSTPESIGSLRTVKFLVLRNNYLS 583 (598)
Q Consensus 506 ~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~l~~l~~L~~L~l~~n~l~ 583 (598)
..+.. +++|+.|+|++|.+++..|..|.++++|++|+|++|++++..+..+..+++|+.|++++|++.
T Consensus 236 ~~~~~----------l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~ 303 (452)
T 3zyi_A 236 GSFHG----------LSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYLVELHLHHNPWN 303 (452)
T ss_dssp GGGTT----------CTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTSSTTCTTCCEEECCSSCEE
T ss_pred ccccC----------ccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcCCccChHHhccccCCCEEEccCCCcC
Confidence 66655 677777777777777777777777777788888877777666666777777778888777754
|
| >3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} | Back alignment and structure |
|---|
Probab=99.93 E-value=7.1e-27 Score=231.74 Aligned_cols=252 Identities=21% Similarity=0.144 Sum_probs=169.3
Q ss_pred ccEEECcCCCcCccccchhhcCCCCCCEEecccccCCcccchhhhCCCCCCCCCCccEEEccCccccccCccccCCCCCC
Q 037325 290 LQELDLSGNSFLGGQLSRNLGKLCNLRTMILSRNNISSEVSDFLDGLSECTNSILLEKLELRFNQFTGILPISLGSLKNL 369 (598)
Q Consensus 290 L~~L~l~~n~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~l~~L 369 (598)
++..+++.+. +.......+..+++|++|++++|.+.+..+..+..++ +|++|++++|.+++..+ +..+++|
T Consensus 12 l~i~~ls~~~-l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~------~L~~L~Ls~n~l~~~~~--~~~l~~L 82 (317)
T 3o53_A 12 YKIEKVTDSS-LKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFT------KLELLNLSSNVLYETLD--LESLSTL 82 (317)
T ss_dssp EEEESCCTTT-HHHHHHHHHTTGGGCSEEECTTSCCCCCCHHHHTTCT------TCCEEECTTSCCEEEEE--ETTCTTC
T ss_pred eeEeeccccc-hhhhHHHHhccCCCCCEEECcCCccCcCCHHHhhCCC------cCCEEECCCCcCCcchh--hhhcCCC
Confidence 4444555555 3333334445556677777777777666666666665 67777777776665433 6666677
Q ss_pred CEEEccCCcCCccchhhccCCCCCCEEeCcCCcCCcccCCCchhhhcCCCCCCEEEccCccCccccchHHHhcCCCCCEE
Q 037325 370 RHLVLWQNSFLGSIPPSIGNLTLLKELYLASNQMNGQKISDSYQHLKNQTELRTLVLNKARISDTISDWFWQLSLTLDEL 449 (598)
Q Consensus 370 ~~L~ls~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L 449 (598)
++|++++|++++.. ..++|++|++++|.+++.. + ..+++|+.|++++|++++..+..+.. +++|++|
T Consensus 83 ~~L~Ls~n~l~~l~-----~~~~L~~L~l~~n~l~~~~-~------~~~~~L~~L~l~~N~l~~~~~~~~~~-l~~L~~L 149 (317)
T 3o53_A 83 RTLDLNNNYVQELL-----VGPSIETLHAANNNISRVS-C------SRGQGKKNIYLANNKITMLRDLDEGC-RSRVQYL 149 (317)
T ss_dssp CEEECCSSEEEEEE-----ECTTCCEEECCSSCCSEEE-E------CCCSSCEEEECCSSCCCSGGGBCTGG-GSSEEEE
T ss_pred CEEECcCCcccccc-----CCCCcCEEECCCCccCCcC-c------cccCCCCEEECCCCCCCCccchhhhc-cCCCCEE
Confidence 77777776665322 2266666677666666543 1 22455666666666666554444433 4556666
Q ss_pred EccCCcCcccCCCCcccCCCCEEEcccCcCcccCCCCCcCCcEEEccCCcccccCCchhhcccCCCCCccccCCCCeEeC
Q 037325 450 DVAYNELRGRVPNSLGFNFPAKVDLSFNNFEGRLLLWSFNVTKLYLRDNSFSGLIPNDIGQNLPFLTDLGNLKQLITLVI 529 (598)
Q Consensus 450 ~ls~n~~~~~~p~~~~~~~L~~l~ls~n~l~~~~~~~~~~L~~L~ls~n~l~~~~p~~~~~~~~~~~~~~~l~~L~~L~L 529 (598)
++++|.+++..+..+ ...+++|++|++++|++++. |... .+++|+.|+|
T Consensus 150 ~Ls~N~l~~~~~~~~-------------------~~~l~~L~~L~L~~N~l~~~-~~~~-----------~l~~L~~L~L 198 (317)
T 3o53_A 150 DLKLNEIDTVNFAEL-------------------AASSDTLEHLNLQYNFIYDV-KGQV-----------VFAKLKTLDL 198 (317)
T ss_dssp ECTTSCCCEEEGGGG-------------------GGGTTTCCEEECTTSCCCEE-ECCC-----------CCTTCCEEEC
T ss_pred ECCCCCCCcccHHHH-------------------hhccCcCCEEECCCCcCccc-cccc-----------ccccCCEEEC
Confidence 666666554333222 11246889999999998854 3221 2789999999
Q ss_pred cCCccccccchhccCCCCCCEEECCCCcCccccchhccCCCCCCEEEccCCCCc-ccCCcCccCcCCC
Q 037325 530 SNNNLSGEIPLLFSNISFLYILDMSNNSLSGSTPESIGSLRTVKFLVLRNNYLS-GKLPLSLKNCTFQ 596 (598)
Q Consensus 530 s~N~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~l~~l~~L~~L~l~~n~l~-g~~P~~~~~~~~L 596 (598)
++|.++ .+|..+..+++|++|++++|+++ .+|..+..+++|+.|++++|++. +.+|..+..++.|
T Consensus 199 s~N~l~-~l~~~~~~l~~L~~L~L~~N~l~-~l~~~~~~l~~L~~L~l~~N~~~~~~~~~~~~~~~~L 264 (317)
T 3o53_A 199 SSNKLA-FMGPEFQSAAGVTWISLRNNKLV-LIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRV 264 (317)
T ss_dssp CSSCCC-EECGGGGGGTTCSEEECTTSCCC-EECTTCCCCTTCCEEECTTCCCBHHHHHHHHHTCHHH
T ss_pred CCCcCC-cchhhhcccCcccEEECcCCccc-chhhHhhcCCCCCEEEccCCCccCcCHHHHHhccccc
Confidence 999999 56666999999999999999999 68999999999999999999998 7888877766543
|
| >2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* | Back alignment and structure |
|---|
Probab=99.93 E-value=6.2e-28 Score=261.48 Aligned_cols=437 Identities=14% Similarity=0.076 Sum_probs=280.9
Q ss_pred EEeCCCCCCCCCCcchhccCCCCCCEEECcCCCCCcc---c------------chhccCCCCCCEEEccCCCCCCCccCh
Q 037325 117 YLDLSMNNFTGFQVPEFIGSLKELRYLNLSGSFFSGT---I------------PQTLGNLSNLLYLDLNNFLDQSNQIDL 181 (598)
Q Consensus 117 ~L~Ls~n~l~~~~~p~~~~~l~~L~~L~L~~n~l~~~---~------------p~~l~~l~~L~~L~L~~n~~~~~~~~~ 181 (598)
.++++.+... .....+..+++|++|+++++..... . +.....+++|++|++++|.+. ....
T Consensus 47 ~l~~~~~~~~--~~~~~~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~--~~~~ 122 (594)
T 2p1m_B 47 KVFIGNCYAV--SPATVIRRFPKVRSVELKGKPHFADFNLVPDGWGGYVYPWIEAMSSSYTWLEEIRLKRMVVT--DDCL 122 (594)
T ss_dssp EEEESSTTSS--CHHHHHHHCTTCCEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCBCC--HHHH
T ss_pred EEeecccccc--CHHHHHhhCCCceEEeccCCCchhhcccccccccchhhHHHHHHHHhCCCCCeEEeeCcEEc--HHHH
Confidence 5566554332 2344567789999999999753211 1 122356889999999998643 2223
Q ss_pred hhhc-CCCCCcEEEcCCC-CCCCCcccchHhhhcCCCCCEEEcCCCCCCCCCCC---CCcCCCCCccEEEccCCC--CCC
Q 037325 182 EWLS-GLSSLVYFNLGGA-DLSKAGAYWLEVFNKLHSFVELHLPNCNLPSLPLS---FPSLNFASLQVLDLSNND--FNS 254 (598)
Q Consensus 182 ~~~~-~l~~L~~L~l~~n-~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~---~~~~~l~~L~~L~L~~n~--l~~ 254 (598)
..+. .+++|++|++++| .+.... +...+..+++|++|++++|.+++.... .....+++|++|++++|. ++.
T Consensus 123 ~~l~~~~~~L~~L~L~~~~~~~~~~--l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~ 200 (594)
T 2p1m_B 123 ELIAKSFKNFKVLVLSSCEGFSTDG--LAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISCLASEVSF 200 (594)
T ss_dssp HHHHHHCTTCCEEEEESCEEEEHHH--HHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCTTCCCCCEEECTTCCSCCCH
T ss_pred HHHHHhCCCCcEEeCCCcCCCCHHH--HHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhhcCCcCcEEEecccCCcCCH
Confidence 3343 6899999999998 444321 145556899999999999987765421 223367899999999986 322
Q ss_pred C-cchhhhcCCCCCEEEccCCcccccCCccccCCCCccEEECcCCCc--C---ccccchhhcCCCCCCEE-ecccccCCc
Q 037325 255 T-TPHWLFNITSLLCLDLGSNDLQGDIPDGFASLNSLQELDLSGNSF--L---GGQLSRNLGKLCNLRTM-ILSRNNISS 327 (598)
Q Consensus 255 ~-~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~--~---~~~~~~~l~~l~~L~~L-~l~~n~l~~ 327 (598)
. +.....++++|++|++++|...+.++..+..+++|++|++..+.. . -..++..+.++++|+.+ .+.+... +
T Consensus 201 ~~l~~l~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~l~~~~~L~~Ls~~~~~~~-~ 279 (594)
T 2p1m_B 201 SALERLVTRCPNLKSLKLNRAVPLEKLATLLQRAPQLEELGTGGYTAEVRPDVYSGLSVALSGCKELRCLSGFWDAVP-A 279 (594)
T ss_dssp HHHHHHHHHCTTCCEEECCTTSCHHHHHHHHHHCTTCSEEECSBCCCCCCHHHHHHHHHHHHTCTTCCEEECCBTCCG-G
T ss_pred HHHHHHHHhCCCCcEEecCCCCcHHHHHHHHhcCCcceEcccccccCccchhhHHHHHHHHhcCCCcccccCCcccch-h
Confidence 1 222335679999999999843334777778899999999776641 0 02345577899999999 4443321 2
Q ss_pred ccchhhhCCCCCCCCCCccEEEccCccccccCc-cccCCCCCCCEEEccCCcCCcc-chhhccCCCCCCEEeCcC-----
Q 037325 328 EVSDFLDGLSECTNSILLEKLELRFNQFTGILP-ISLGSLKNLRHLVLWQNSFLGS-IPPSIGNLTLLKELYLAS----- 400 (598)
Q Consensus 328 ~~~~~~~~l~~~~~~~~L~~L~Ls~n~l~~~~~-~~l~~l~~L~~L~ls~n~l~~~-~~~~l~~l~~L~~L~l~~----- 400 (598)
..+..+..++ +|++|++++|.+++... ..+..+++|+.|++++| +.+. ++.....+++|++|++.+
T Consensus 280 ~l~~~~~~~~------~L~~L~L~~~~l~~~~l~~~~~~~~~L~~L~l~~~-~~~~~l~~l~~~~~~L~~L~L~~~~~~g 352 (594)
T 2p1m_B 280 YLPAVYSVCS------RLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDY-IEDAGLEVLASTCKDLRELRVFPSEPFV 352 (594)
T ss_dssp GGGGGHHHHT------TCCEEECTTCCCCHHHHHHHHTTCTTCCEEEEEGG-GHHHHHHHHHHHCTTCCEEEEECSCTTC
T ss_pred hHHHHHHhhC------CCCEEEccCCCCCHHHHHHHHhcCCCcCEEeCcCc-cCHHHHHHHHHhCCCCCEEEEecCcccc
Confidence 2333333444 89999999998765432 23568899999999998 4432 333334689999999943
Q ss_pred ----CcCCcccCCCchhhh-cCCCCCCEEEccCccCccccchHHHhcCCCCCEEEcc--C----CcCcccCCC-----Cc
Q 037325 401 ----NQMNGQKISDSYQHL-KNQTELRTLVLNKARISDTISDWFWQLSLTLDELDVA--Y----NELRGRVPN-----SL 464 (598)
Q Consensus 401 ----n~l~~~~~~~~~~~l-~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~ls--~----n~~~~~~p~-----~~ 464 (598)
+.+++.. +..+ ..+++|+.|.+..|.+++.....+...+++|++|+++ + +.+++...+ .+
T Consensus 353 ~~~~~~l~~~~----l~~l~~~~~~L~~L~~~~~~l~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~l~ 428 (594)
T 2p1m_B 353 MEPNVALTEQG----LVSVSMGCPKLESVLYFCRQMTNAALITIARNRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIV 428 (594)
T ss_dssp SSCSSCCCHHH----HHHHHHHCTTCCEEEEEESCCCHHHHHHHHHHCTTCCEEEEEESSTTCCCTTTCCCTHHHHHHHH
T ss_pred cccCCCCCHHH----HHHHHHhchhHHHHHHhcCCcCHHHHHHHHhhCCCcceeEeecccCCCcccccCCchhhHHHHHH
Confidence 3444322 2233 3589999999999999888777777668999999999 3 444421111 12
Q ss_pred ccC-CCCEEEcccCcCcccCCC----CCcCCcEEEccCCcccccCCchhhcccCCCCCccccCCCCeEeCcCCccccccc
Q 037325 465 GFN-FPAKVDLSFNNFEGRLLL----WSFNVTKLYLRDNSFSGLIPNDIGQNLPFLTDLGNLKQLITLVISNNNLSGEIP 539 (598)
Q Consensus 465 ~~~-~L~~l~ls~n~l~~~~~~----~~~~L~~L~ls~n~l~~~~p~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p 539 (598)
... .|+.|++++ .+++..+. .+++|+.|++++|.+++..+..+.. .+++|+.|+|++|.+++..+
T Consensus 429 ~~~~~L~~L~L~~-~l~~~~~~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~---------~~~~L~~L~L~~n~~~~~~~ 498 (594)
T 2p1m_B 429 EHCKDLRRLSLSG-LLTDKVFEYIGTYAKKMEMLSVAFAGDSDLGMHHVLS---------GCDSLRKLEIRDCPFGDKAL 498 (594)
T ss_dssp HHCTTCCEEECCS-SCCHHHHHHHHHHCTTCCEEEEESCCSSHHHHHHHHH---------HCTTCCEEEEESCSCCHHHH
T ss_pred hhCCCccEEeecC-cccHHHHHHHHHhchhccEeeccCCCCcHHHHHHHHh---------cCCCcCEEECcCCCCcHHHH
Confidence 222 677777766 44432222 1466777777777776554444411 16777777777777754433
Q ss_pred h-hccCCCCCCEEECCCCcCccccchhc-cCCCCCCEEEccCCC
Q 037325 540 L-LFSNISFLYILDMSNNSLSGSTPESI-GSLRTVKFLVLRNNY 581 (598)
Q Consensus 540 ~-~~~~l~~L~~L~ls~N~l~~~~p~~l-~~l~~L~~L~l~~n~ 581 (598)
. .+..+++|++|++++|+++......+ ..++.|+...+..+.
T Consensus 499 ~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~lp~l~i~~~~~~~ 542 (594)
T 2p1m_B 499 LANASKLETMRSLWMSSCSVSFGACKLLGQKMPKLNVEVIDERG 542 (594)
T ss_dssp HHTGGGGGGSSEEEEESSCCBHHHHHHHHHHCTTEEEEEECSSS
T ss_pred HHHHHhCCCCCEEeeeCCCCCHHHHHHHHHhCCCCEEEEecCCC
Confidence 3 33456777777777777754434444 345666555555543
|
| >1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* | Back alignment and structure |
|---|
Probab=99.93 E-value=1.8e-25 Score=218.33 Aligned_cols=207 Identities=24% Similarity=0.216 Sum_probs=100.2
Q ss_pred CCccEEEccCCCCCCCcchhhhcCCCCCEEEccCCcccccCCccccCCCCccEEECcCCCcCccccchhhcCCCCCCEEe
Q 037325 240 ASLQVLDLSNNDFNSTTPHWLFNITSLLCLDLGSNDLQGDIPDGFASLNSLQELDLSGNSFLGGQLSRNLGKLCNLRTMI 319 (598)
Q Consensus 240 ~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~l~~l~~L~~L~ 319 (598)
+++++|++++|.+++..+..+..+++|++|++++|.+++..+..+..+++|++|++++|..+....+..+..+++|++|+
T Consensus 32 ~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~L~ 111 (285)
T 1ozn_A 32 AASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLH 111 (285)
T ss_dssp TTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEEE
T ss_pred CCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCCCccccCHHHhcCCcCCCEEE
Confidence 34555555555554444444445555555555555554444444555555555555555322223344444555555555
Q ss_pred cccccCCcccchhhhCCCCCCCCCCccEEEccCccccccCccccCCCCCCCEEEccCCcCCccchhhccCCCCCCEEeCc
Q 037325 320 LSRNNISSEVSDFLDGLSECTNSILLEKLELRFNQFTGILPISLGSLKNLRHLVLWQNSFLGSIPPSIGNLTLLKELYLA 399 (598)
Q Consensus 320 l~~n~l~~~~~~~~~~l~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~ls~n~l~~~~~~~l~~l~~L~~L~l~ 399 (598)
+++|.+.+..+..+..++ +|++|++++|.+++..+..+..+++|++|++++|++++..+..+..+++|++|+++
T Consensus 112 l~~n~l~~~~~~~~~~l~------~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~ 185 (285)
T 1ozn_A 112 LDRCGLQELGPGLFRGLA------ALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLH 185 (285)
T ss_dssp CTTSCCCCCCTTTTTTCT------TCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECC
T ss_pred CCCCcCCEECHhHhhCCc------CCCEEECCCCcccccCHhHhccCCCccEEECCCCcccccCHHHhcCccccCEEECC
Confidence 555555544444444444 45555555555554433344555555555555555553333344555555555555
Q ss_pred CCcCCcccCCCchhhhcCCCCCCEEEccCccCccccchHHHhcCCCCCEEEccCCcCc
Q 037325 400 SNQMNGQKISDSYQHLKNQTELRTLVLNKARISDTISDWFWQLSLTLDELDVAYNELR 457 (598)
Q Consensus 400 ~n~l~~~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~ls~n~~~ 457 (598)
+|.+++.. +. .+..+++|+.|++++|++++..+..+.. +++|++|++++|++.
T Consensus 186 ~n~l~~~~-~~---~~~~l~~L~~L~l~~n~l~~~~~~~~~~-l~~L~~L~l~~N~~~ 238 (285)
T 1ozn_A 186 QNRVAHVH-PH---AFRDLGRLMTLYLFANNLSALPTEALAP-LRALQYLRLNDNPWV 238 (285)
T ss_dssp SSCCCEEC-TT---TTTTCTTCCEEECCSSCCSCCCHHHHTT-CTTCCEEECCSSCEE
T ss_pred CCcccccC-Hh---HccCcccccEeeCCCCcCCcCCHHHccc-CcccCEEeccCCCcc
Confidence 55554443 21 2344455555555555555443333332 445555555555544
|
| >1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* | Back alignment and structure |
|---|
Probab=99.93 E-value=3e-25 Score=216.73 Aligned_cols=254 Identities=21% Similarity=0.219 Sum_probs=169.1
Q ss_pred cEEEcCCCCCCCCcccchHhhhcCCCCCEEEcCCCCCCCCCCCCCcCCCCCccEEEccCCCCCCCcchhhhcCCCCCEEE
Q 037325 191 VYFNLGGADLSKAGAYWLEVFNKLHSFVELHLPNCNLPSLPLSFPSLNFASLQVLDLSNNDFNSTTPHWLFNITSLLCLD 270 (598)
Q Consensus 191 ~~L~l~~n~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~ 270 (598)
+.++.+++.+.... .. -.++|++|++++|.+++.++ ..+..+++|++|++++|.+++..+..+..+++|++|+
T Consensus 14 ~~~~c~~~~l~~ip----~~--~~~~l~~L~l~~n~i~~~~~-~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ 86 (285)
T 1ozn_A 14 VTTSCPQQGLQAVP----VG--IPAASQRIFLHGNRISHVPA-ASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLD 86 (285)
T ss_dssp CEEECCSSCCSSCC----TT--CCTTCSEEECTTSCCCEECT-TTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEE
T ss_pred eEEEcCcCCcccCC----cC--CCCCceEEEeeCCcCCccCH-HHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEe
Confidence 34555555554442 11 13466666676666666554 4456667777777777777766666677777777777
Q ss_pred ccCCc-ccccCCccccCCCCccEEECcCCCcCccccchhhcCCCCCCEEecccccCCcccchhhhCCCCCCCCCCccEEE
Q 037325 271 LGSND-LQGDIPDGFASLNSLQELDLSGNSFLGGQLSRNLGKLCNLRTMILSRNNISSEVSDFLDGLSECTNSILLEKLE 349 (598)
Q Consensus 271 l~~n~-l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~~~~~~~L~~L~ 349 (598)
+++|. +....+..+..+++|++|++++|. +.+..+..+..+++|++|++++|.+.+..+..+..++ +|++|+
T Consensus 87 l~~n~~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~------~L~~L~ 159 (285)
T 1ozn_A 87 LSDNAQLRSVDPATFHGLGRLHTLHLDRCG-LQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLG------NLTHLF 159 (285)
T ss_dssp CCSCTTCCCCCTTTTTTCTTCCEEECTTSC-CCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCT------TCCEEE
T ss_pred CCCCCCccccCHHHhcCCcCCCEEECCCCc-CCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCC------CccEEE
Confidence 77776 554446667777777777777777 4555566677777777777777777766666666665 677888
Q ss_pred ccCccccccCccccCCCCCCCEEEccCCcCCccchhhccCCCCCCEEeCcCCcCCcccCCCchhhhcCCCCCCEEEccCc
Q 037325 350 LRFNQFTGILPISLGSLKNLRHLVLWQNSFLGSIPPSIGNLTLLKELYLASNQMNGQKISDSYQHLKNQTELRTLVLNKA 429 (598)
Q Consensus 350 Ls~n~l~~~~~~~l~~l~~L~~L~ls~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~~~~L~~L~l~~n 429 (598)
+++|.+++..+..+..+++|+.|++++|++.+..|..+..+++|++|++++|.+++.. + ..+..+++|+.|++++|
T Consensus 160 l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~-~---~~~~~l~~L~~L~l~~N 235 (285)
T 1ozn_A 160 LHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALP-T---EALAPLRALQYLRLNDN 235 (285)
T ss_dssp CCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCC-H---HHHTTCTTCCEEECCSS
T ss_pred CCCCcccccCHHHhcCccccCEEECCCCcccccCHhHccCcccccEeeCCCCcCCcCC-H---HHcccCcccCEEeccCC
Confidence 8877777655556777778888888888877777777777788888888888777543 2 34667777888888888
Q ss_pred cCccccch-HHHhcCCCCCEEEccCCcCcccCCCCcc
Q 037325 430 RISDTISD-WFWQLSLTLDELDVAYNELRGRVPNSLG 465 (598)
Q Consensus 430 ~l~~~~~~-~~~~~~~~L~~L~ls~n~~~~~~p~~~~ 465 (598)
.+....+. ++.. .++.+..+.+.+.+..|..+.
T Consensus 236 ~~~c~~~~~~~~~---~l~~~~~~~~~~~c~~p~~l~ 269 (285)
T 1ozn_A 236 PWVCDCRARPLWA---WLQKFRGSSSEVPCSLPQRLA 269 (285)
T ss_dssp CEECSGGGHHHHH---HHHHCCSEECCCBEEESGGGT
T ss_pred CccCCCCcHHHHH---HHHhcccccCccccCCchHhC
Confidence 77654332 2222 244445666777766666554
|
| >1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.93 E-value=5.8e-27 Score=231.81 Aligned_cols=266 Identities=22% Similarity=0.221 Sum_probs=160.1
Q ss_pred CCC-CCCCCCCcccEEecCCCCcEEEEEcCCCCCCCCCCcccCCCCCcceecCccccCCCCCCEEeCCCCCCCCCCcchh
Q 037325 55 SSW-VGEDCCSWSGVSCNNRTASVIKLNLNNPFRDSFGSFEDDAGHELGGEISPSLLQLKDLEYLDLSMNNFTGFQVPEF 133 (598)
Q Consensus 55 ~~W-~~~~~c~w~gv~c~~~~~~v~~L~L~~~~~~~~~~~~~~~~~~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~p~~ 133 (598)
..| ....|+.+..+.......+++.+++++ +.+ .+|..+... |++|+|++|.+....+|..
T Consensus 22 ~~~~~~~~c~~~~~~~~~~~~~~L~~l~l~~--------------n~l--~~p~~~~~~--L~~L~L~~n~l~~~~~~~~ 83 (312)
T 1wwl_A 22 PDWSSAFNCLGAADVELYGGGRSLEYLLKRV--------------DTE--ADLGQFTDI--IKSLSLKRLTVRAARIPSR 83 (312)
T ss_dssp CCGGGGGGSSSCSEEEEEEEEEECTTHHHHC--------------CTT--CCCHHHHHH--HHHCCCCEEEEEEEECBHH
T ss_pred cchHHHhhhhccccEEEEccCCCceeEeecc--------------ccc--ccHHHHHHH--HhhcccccccccCCCcCHH
Confidence 456 334555555544332233455555555 455 555555443 6677777777643345555
Q ss_pred cc-------CCCCCCEEECcCCCCCcccchhc--cCCCCCCEEEccCCCCCCCccChhhhcCCCCCcEEEcCCCCCCCCc
Q 037325 134 IG-------SLKELRYLNLSGSFFSGTIPQTL--GNLSNLLYLDLNNFLDQSNQIDLEWLSGLSSLVYFNLGGADLSKAG 204 (598)
Q Consensus 134 ~~-------~l~~L~~L~L~~n~l~~~~p~~l--~~l~~L~~L~L~~n~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~ 204 (598)
+. ++++|++|++++|++++.+|..+ ..+++|++|++++|.+ .+.
T Consensus 84 ~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N~l--------------------------~~~- 136 (312)
T 1wwl_A 84 ILFGALRVLGISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSW--------------------------ATR- 136 (312)
T ss_dssp HHHHHHHHHTTSCCCEEEEEEEBCBSCCCCCSSSCCSCCCSEEEEESCBC--------------------------SSS-
T ss_pred HHHHHHHhcCcCCccEEEccCCcccchhHHHHHHhcCCCccEEEccCCCC--------------------------cch-
Confidence 54 56777777777777776666654 5666666666665544 333
Q ss_pred ccchHhhhcC-----CCCCEEEcCCCCCCCCCCCCCcCCCCCccEEEccCCCCCCC--cchhh--hcCCCCCEEEccCCc
Q 037325 205 AYWLEVFNKL-----HSFVELHLPNCNLPSLPLSFPSLNFASLQVLDLSNNDFNST--TPHWL--FNITSLLCLDLGSND 275 (598)
Q Consensus 205 ~~~~~~~~~l-----~~L~~L~l~~~~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~--~~~~l--~~l~~L~~L~l~~n~ 275 (598)
+..+..+ ++|++|++++|.+++.++ ..+..+++|++|++++|++.+. .+..+ ..+++|++|++++|.
T Consensus 137 ---~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~-~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~ 212 (312)
T 1wwl_A 137 ---DAWLAELQQWLKPGLKVLSIAQAHSLNFSC-EQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAG 212 (312)
T ss_dssp ---SSHHHHHHTTCCTTCCEEEEESCSCCCCCT-TTCCCCSSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSC
T ss_pred ---hHHHHHHHHhhcCCCcEEEeeCCCCccchH-HHhccCCCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCc
Confidence 1222222 566666666666666554 4555666777777777766543 22333 566777777777777
Q ss_pred ccc--cCC-ccccCCCCccEEECcCCCcCccccc-hhhcCCCCCCEEecccccCCcccchhhhCCCCCCCCCCccEEEcc
Q 037325 276 LQG--DIP-DGFASLNSLQELDLSGNSFLGGQLS-RNLGKLCNLRTMILSRNNISSEVSDFLDGLSECTNSILLEKLELR 351 (598)
Q Consensus 276 l~~--~~~-~~l~~l~~L~~L~l~~n~~~~~~~~-~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~~~~~~~L~~L~Ls 351 (598)
+++ .++ ..+..+++|++|++++|. +.+..| ..+..+++|++|++++|.++ .+|..+. + +|++|+++
T Consensus 213 l~~~~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~~l~~L~~L~Ls~N~l~-~ip~~~~--~------~L~~L~Ls 282 (312)
T 1wwl_A 213 METPSGVCSALAAARVQLQGLDLSHNS-LRDAAGAPSCDWPSQLNSLNLSFTGLK-QVPKGLP--A------KLSVLDLS 282 (312)
T ss_dssp CCCHHHHHHHHHHTTCCCSEEECTTSC-CCSSCCCSCCCCCTTCCEEECTTSCCS-SCCSSCC--S------EEEEEECC
T ss_pred CcchHHHHHHHHhcCCCCCEEECCCCc-CCcccchhhhhhcCCCCEEECCCCccC-hhhhhcc--C------CceEEECC
Confidence 662 112 223456777777777777 444332 34555677777777777776 3343332 2 68888888
Q ss_pred CccccccCccccCCCCCCCEEEccCCcCCc
Q 037325 352 FNQFTGILPISLGSLKNLRHLVLWQNSFLG 381 (598)
Q Consensus 352 ~n~l~~~~~~~l~~l~~L~~L~ls~n~l~~ 381 (598)
+|++++. |. +..+++|++|++++|++++
T Consensus 283 ~N~l~~~-p~-~~~l~~L~~L~L~~N~l~~ 310 (312)
T 1wwl_A 283 YNRLDRN-PS-PDELPQVGNLSLKGNPFLD 310 (312)
T ss_dssp SSCCCSC-CC-TTTSCEEEEEECTTCTTTC
T ss_pred CCCCCCC-hh-HhhCCCCCEEeccCCCCCC
Confidence 8888765 54 7788888888888888764
|
| >3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} | Back alignment and structure |
|---|
Probab=99.92 E-value=1.6e-25 Score=234.82 Aligned_cols=234 Identities=21% Similarity=0.193 Sum_probs=141.1
Q ss_pred CccEEECcCCCcCccccchhhcCCCCCCEEecccccCCcccchhhhCCCCCCCCCCccEEEccCccccccCccccCCCCC
Q 037325 289 SLQELDLSGNSFLGGQLSRNLGKLCNLRTMILSRNNISSEVSDFLDGLSECTNSILLEKLELRFNQFTGILPISLGSLKN 368 (598)
Q Consensus 289 ~L~~L~l~~n~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~l~~ 368 (598)
+|++|++++|. +.+..|..+..+++|++|++++|.+++..+ +..++ +|++|++++|.+++..+ .++
T Consensus 35 ~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~--l~~l~------~L~~L~Ls~N~l~~l~~-----~~~ 100 (487)
T 3oja_A 35 NVKELDLSGNP-LSQISAADLAPFTKLELLNLSSNVLYETLD--LESLS------TLRTLDLNNNYVQELLV-----GPS 100 (487)
T ss_dssp GCCEEECCSSC-CCCCCGGGGTTCTTCCEEECTTSCCEEEEE--CTTCT------TCCEEECCSSEEEEEEE-----CTT
T ss_pred CccEEEeeCCc-CCCCCHHHHhCCCCCCEEEeeCCCCCCCcc--cccCC------CCCEEEecCCcCCCCCC-----CCC
Confidence 56666666665 444445555556666666666665554443 33333 55566666555553221 255
Q ss_pred CCEEEccCCcCCccchhhccCCCCCCEEeCcCCcCCcccCCCchhhhcCCCCCCEEEccCccCccccchHHHhcCCCCCE
Q 037325 369 LRHLVLWQNSFLGSIPPSIGNLTLLKELYLASNQMNGQKISDSYQHLKNQTELRTLVLNKARISDTISDWFWQLSLTLDE 448 (598)
Q Consensus 369 L~~L~ls~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~ 448 (598)
|+.|++++|.+.+..+. .+++|+.|++++|.+++.. +. .+..+++|+.|++++|.+++..|..+...++.|++
T Consensus 101 L~~L~L~~N~l~~~~~~---~l~~L~~L~L~~N~l~~~~-~~---~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~ 173 (487)
T 3oja_A 101 IETLHAANNNISRVSCS---RGQGKKNIYLANNKITMLR-DL---DEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEH 173 (487)
T ss_dssp CCEEECCSSCCCCEEEC---CCSSCEEEECCSSCCCSGG-GB---CGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCE
T ss_pred cCEEECcCCcCCCCCcc---ccCCCCEEECCCCCCCCCC-ch---hhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccE
Confidence 55555555555543332 2345555555555555443 21 13344555555555555555544444433445555
Q ss_pred EEccCCcCcccCCCCcccCCCCEEEcccCcCcccCCC-CCcCCcEEEccCCcccccCCchhhcccCCCCCccccCCCCeE
Q 037325 449 LDVAYNELRGRVPNSLGFNFPAKVDLSFNNFEGRLLL-WSFNVTKLYLRDNSFSGLIPNDIGQNLPFLTDLGNLKQLITL 527 (598)
Q Consensus 449 L~ls~n~~~~~~p~~~~~~~L~~l~ls~n~l~~~~~~-~~~~L~~L~ls~n~l~~~~p~~~~~~~~~~~~~~~l~~L~~L 527 (598)
|++++|.+++. .+. .+++|+.|++++|++++ +|+.+.. +++|+.|
T Consensus 174 L~Ls~N~l~~~-----------------------~~~~~l~~L~~L~Ls~N~l~~-~~~~~~~----------l~~L~~L 219 (487)
T 3oja_A 174 LNLQYNFIYDV-----------------------KGQVVFAKLKTLDLSSNKLAF-MGPEFQS----------AAGVTWI 219 (487)
T ss_dssp EECTTSCCCEE-----------------------ECCCCCTTCCEEECCSSCCCE-ECGGGGG----------GTTCSEE
T ss_pred EecCCCccccc-----------------------cccccCCCCCEEECCCCCCCC-CCHhHcC----------CCCccEE
Confidence 55555554432 111 25678888888888885 4445665 7888899
Q ss_pred eCcCCccccccchhccCCCCCCEEECCCCcCc-cccchhccCCCCCCEEEcc
Q 037325 528 VISNNNLSGEIPLLFSNISFLYILDMSNNSLS-GSTPESIGSLRTVKFLVLR 578 (598)
Q Consensus 528 ~Ls~N~l~~~~p~~~~~l~~L~~L~ls~N~l~-~~~p~~l~~l~~L~~L~l~ 578 (598)
+|++|.++ .+|..++.+++|+.|++++|.+. +.+|..+..++.|+.++++
T Consensus 220 ~Ls~N~l~-~lp~~l~~l~~L~~L~l~~N~l~c~~~~~~~~~l~~L~~l~~~ 270 (487)
T 3oja_A 220 SLRNNKLV-LIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQ 270 (487)
T ss_dssp ECTTSCCC-EECTTCCCCTTCCEEECTTCCBCHHHHHHHHTTCHHHHHHHHH
T ss_pred EecCCcCc-ccchhhccCCCCCEEEcCCCCCcCcchHHHHHhCCCCcEEecc
Confidence 99998888 47888888888899999988887 6677888888888888775
|
| >3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} | Back alignment and structure |
|---|
Probab=99.92 E-value=1.8e-25 Score=234.41 Aligned_cols=228 Identities=21% Similarity=0.143 Sum_probs=143.4
Q ss_pred CCCEEecccccCCcccchhhhCCCCCCCCCCccEEEccCccccccCccccCCCCCCCEEEccCCcCCccchhhccCCCCC
Q 037325 314 NLRTMILSRNNISSEVSDFLDGLSECTNSILLEKLELRFNQFTGILPISLGSLKNLRHLVLWQNSFLGSIPPSIGNLTLL 393 (598)
Q Consensus 314 ~L~~L~l~~n~l~~~~~~~~~~l~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~ls~n~l~~~~~~~l~~l~~L 393 (598)
+|++|++++|.+.+..+..+..++ +|++|++++|.+++..| +..+++|++|++++|.+++.. ..++|
T Consensus 35 ~L~~L~Ls~n~l~~~~~~~~~~l~------~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~l~-----~~~~L 101 (487)
T 3oja_A 35 NVKELDLSGNPLSQISAADLAPFT------KLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQELL-----VGPSI 101 (487)
T ss_dssp GCCEEECCSSCCCCCCGGGGTTCT------TCCEEECTTSCCEEEEE--CTTCTTCCEEECCSSEEEEEE-----ECTTC
T ss_pred CccEEEeeCCcCCCCCHHHHhCCC------CCCEEEeeCCCCCCCcc--cccCCCCCEEEecCCcCCCCC-----CCCCc
Confidence 555555555555555554555444 55555555555554333 455555555555555554221 11455
Q ss_pred CEEeCcCCcCCcccCCCchhhhcCCCCCCEEEccCccCccccchHHHhcCCCCCEEEccCCcCcccCCCCcccCCCCEEE
Q 037325 394 KELYLASNQMNGQKISDSYQHLKNQTELRTLVLNKARISDTISDWFWQLSLTLDELDVAYNELRGRVPNSLGFNFPAKVD 473 (598)
Q Consensus 394 ~~L~l~~n~l~~~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~ls~n~~~~~~p~~~~~~~L~~l~ 473 (598)
++|++++|.+++.. + ..+++|+.|++++|.+++..|..+.. +++|++|++++|.+++..|..+.
T Consensus 102 ~~L~L~~N~l~~~~-~------~~l~~L~~L~L~~N~l~~~~~~~~~~-l~~L~~L~Ls~N~l~~~~~~~l~-------- 165 (487)
T 3oja_A 102 ETLHAANNNISRVS-C------SRGQGKKNIYLANNKITMLRDLDEGC-RSRVQYLDLKLNEIDTVNFAELA-------- 165 (487)
T ss_dssp CEEECCSSCCCCEE-E------CCCSSCEEEECCSSCCCSGGGBCGGG-GSSEEEEECTTSCCCEEEGGGGG--------
T ss_pred CEEECcCCcCCCCC-c------cccCCCCEEECCCCCCCCCCchhhcC-CCCCCEEECCCCCCCCcChHHHh--------
Confidence 55555555554433 1 12344555555555555444433332 34445555555444443332221
Q ss_pred cccCcCcccCCCCCcCCcEEEccCCcccccCCchhhcccCCCCCccccCCCCeEeCcCCccccccchhccCCCCCCEEEC
Q 037325 474 LSFNNFEGRLLLWSFNVTKLYLRDNSFSGLIPNDIGQNLPFLTDLGNLKQLITLVISNNNLSGEIPLLFSNISFLYILDM 553 (598)
Q Consensus 474 ls~n~l~~~~~~~~~~L~~L~ls~n~l~~~~p~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~l 553 (598)
..+++|+.|+|++|.+++. |. . ..+++|+.|+|++|.+++ +|..++.+++|+.|++
T Consensus 166 -----------~~l~~L~~L~Ls~N~l~~~-~~-~----------~~l~~L~~L~Ls~N~l~~-~~~~~~~l~~L~~L~L 221 (487)
T 3oja_A 166 -----------ASSDTLEHLNLQYNFIYDV-KG-Q----------VVFAKLKTLDLSSNKLAF-MGPEFQSAAGVTWISL 221 (487)
T ss_dssp -----------GGTTTCCEEECTTSCCCEE-EC-C----------CCCTTCCEEECCSSCCCE-ECGGGGGGTTCSEEEC
T ss_pred -----------hhCCcccEEecCCCccccc-cc-c----------ccCCCCCEEECCCCCCCC-CCHhHcCCCCccEEEe
Confidence 1257899999999999865 22 1 127999999999999995 5556999999999999
Q ss_pred CCCcCccccchhccCCCCCCEEEccCCCCc-ccCCcCccCcCC
Q 037325 554 SNNSLSGSTPESIGSLRTVKFLVLRNNYLS-GKLPLSLKNCTF 595 (598)
Q Consensus 554 s~N~l~~~~p~~l~~l~~L~~L~l~~n~l~-g~~P~~~~~~~~ 595 (598)
++|++++ +|..+..+++|+.|++++|++. +.+|..+..+..
T Consensus 222 s~N~l~~-lp~~l~~l~~L~~L~l~~N~l~c~~~~~~~~~l~~ 263 (487)
T 3oja_A 222 RNNKLVL-IEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQR 263 (487)
T ss_dssp TTSCCCE-ECTTCCCCTTCCEEECTTCCBCHHHHHHHHTTCHH
T ss_pred cCCcCcc-cchhhccCCCCCEEEcCCCCCcCcchHHHHHhCCC
Confidence 9999995 8888999999999999999998 777777766543
|
| >2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} | Back alignment and structure |
|---|
Probab=99.92 E-value=1.2e-23 Score=203.45 Aligned_cols=215 Identities=25% Similarity=0.277 Sum_probs=134.3
Q ss_pred CCCCCcccEEecCCCCcEEEEEcCCCCCCCCCCcccCCCCCcceecCccccCCCCCCEEeCCCCCCCCCCcchhccCCCC
Q 037325 60 EDCCSWSGVSCNNRTASVIKLNLNNPFRDSFGSFEDDAGHELGGEISPSLLQLKDLEYLDLSMNNFTGFQVPEFIGSLKE 139 (598)
Q Consensus 60 ~~~c~w~gv~c~~~~~~v~~L~L~~~~~~~~~~~~~~~~~~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~p~~~~~l~~ 139 (598)
.++|.|.|+.|.- .+.++.+++++ ++++. +|..+. +++++|++++|+++.. .+..+.++++
T Consensus 2 ~~~C~~~~~~C~c-~~~~~~l~~~~--------------~~l~~-ip~~~~--~~l~~L~l~~n~l~~~-~~~~~~~l~~ 62 (270)
T 2o6q_A 2 EALCKKDGGVCSC-NNNKNSVDCSS--------------KKLTA-IPSNIP--ADTKKLDLQSNKLSSL-PSKAFHRLTK 62 (270)
T ss_dssp CCCBGGGTCSBEE-ETTTTEEECTT--------------SCCSS-CCSCCC--TTCSEEECCSSCCSCC-CTTSSSSCTT
T ss_pred CccCCCCCCCCEe-CCCCCEEEccC--------------CCCCc-cCCCCC--CCCCEEECcCCCCCee-CHHHhcCCCC
Confidence 4789999988853 23456788887 56663 555443 6899999999999865 5557888999
Q ss_pred CCEEECcCCCCCcccchhccCCCCCCEEEccCCCCCCCccChhhhcCCCCCcEEEcCCCCCCCCcccchHhhhcCCCCCE
Q 037325 140 LRYLNLSGSFFSGTIPQTLGNLSNLLYLDLNNFLDQSNQIDLEWLSGLSSLVYFNLGGADLSKAGAYWLEVFNKLHSFVE 219 (598)
Q Consensus 140 L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~l~~L~~ 219 (598)
|++|++++|.++...+..|..+++|++|++++|.+.... ...+.++++|++|++++|.+.... +..+..+++|++
T Consensus 63 L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~l~~~~--~~~~~~l~~L~~L~l~~n~l~~~~---~~~~~~l~~L~~ 137 (270)
T 2o6q_A 63 LRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNKLQALP--IGVFDQLVNLAELRLDRNQLKSLP---PRVFDSLTKLTY 137 (270)
T ss_dssp CCEEECCSSCCSCCCTTTTSSCTTCCEEECCSSCCCCCC--TTTTTTCSSCCEEECCSSCCCCCC---TTTTTTCTTCCE
T ss_pred CCEEECCCCccCeeChhhhcCCCCCCEEECCCCcCCcCC--HhHcccccCCCEEECCCCccCeeC---HHHhCcCcCCCE
Confidence 999999999998544445677888888888887654322 233556666666666666665554 334555555555
Q ss_pred EEcCCCCCCCCCCCCCcCCCCCccEEEccCCCCCCCcchhhhcCCCCCEEEccCCcccccCCccccCCCCccEEECcCCC
Q 037325 220 LHLPNCNLPSLPLSFPSLNFASLQVLDLSNNDFNSTTPHWLFNITSLLCLDLGSNDLQGDIPDGFASLNSLQELDLSGNS 299 (598)
Q Consensus 220 L~l~~~~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~ 299 (598)
|++++|.+++.+. ..+..+++|++|++++|++++..+..+..+++|++|++++|.+++..+..+..+++|+.|++++|+
T Consensus 138 L~Ls~n~l~~~~~-~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~ 216 (270)
T 2o6q_A 138 LSLGYNELQSLPK-GVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQENP 216 (270)
T ss_dssp EECCSSCCCCCCT-TTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSC
T ss_pred EECCCCcCCccCH-hHccCCcccceeEecCCcCcEeChhHhccCCCcCEEECCCCcCCcCCHHHhccccCCCEEEecCCC
Confidence 5555555555544 334445555555555555554444445555555555555555553333334445555555555554
|
| >3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} | Back alignment and structure |
|---|
Probab=99.90 E-value=1.3e-24 Score=219.60 Aligned_cols=213 Identities=21% Similarity=0.227 Sum_probs=127.8
Q ss_pred EEEccCCCCCCCcchhhhcCCCCCEEEccCCcccccCC----ccccCCC-CccEEECcCCCcCccccchhhcCC-----C
Q 037325 244 VLDLSNNDFNSTTPHWLFNITSLLCLDLGSNDLQGDIP----DGFASLN-SLQELDLSGNSFLGGQLSRNLGKL-----C 313 (598)
Q Consensus 244 ~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~----~~l~~l~-~L~~L~l~~n~~~~~~~~~~l~~l-----~ 313 (598)
.++++.|.+++.+|..+...++|++|++++|.+++..+ ..+..++ +|++|++++|. +++..+..+..+ +
T Consensus 2 ~~~ls~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~-l~~~~~~~l~~~l~~~~~ 80 (362)
T 3goz_A 2 NYKLTLHPGSNPVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNS-LGFKNSDELVQILAAIPA 80 (362)
T ss_dssp EEECCCCTTCCHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSC-GGGSCHHHHHHHHHTSCT
T ss_pred ccccccccchHHHHHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCC-CCHHHHHHHHHHHhccCC
Confidence 35677777777777776666678888888888776555 5566666 78888888877 455445555443 7
Q ss_pred CCCEEecccccCCcccchhhhCC-CCCCCCCCccEEEccCccccccCcccc----CC-CCCCCEEEccCCcCCccc----
Q 037325 314 NLRTMILSRNNISSEVSDFLDGL-SECTNSILLEKLELRFNQFTGILPISL----GS-LKNLRHLVLWQNSFLGSI---- 383 (598)
Q Consensus 314 ~L~~L~l~~n~l~~~~~~~~~~l-~~~~~~~~L~~L~Ls~n~l~~~~~~~l----~~-l~~L~~L~ls~n~l~~~~---- 383 (598)
+|++|++++|.+++..+..+... .... ++|++|++++|.+++..+..+ .. .++|++|++++|.+++..
T Consensus 81 ~L~~L~Ls~n~l~~~~~~~l~~~l~~~~--~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l 158 (362)
T 3goz_A 81 NVTSLNLSGNFLSYKSSDELVKTLAAIP--FTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDEL 158 (362)
T ss_dssp TCCEEECCSSCGGGSCHHHHHHHHHTSC--TTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHH
T ss_pred CccEEECcCCcCChHHHHHHHHHHHhCC--CCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHH
Confidence 77777777777776665533322 0000 167777777777765544332 23 257777777777776433
Q ss_pred hhhccCCC-CCCEEeCcCCcCCcccCCCchhhhcCC-CCCCEEEccCccCcccc----chHHHhcCCCCCEEEccCCcCc
Q 037325 384 PPSIGNLT-LLKELYLASNQMNGQKISDSYQHLKNQ-TELRTLVLNKARISDTI----SDWFWQLSLTLDELDVAYNELR 457 (598)
Q Consensus 384 ~~~l~~l~-~L~~L~l~~n~l~~~~~~~~~~~l~~~-~~L~~L~l~~n~l~~~~----~~~~~~~~~~L~~L~ls~n~~~ 457 (598)
+..+...+ +|++|++++|.+++.........+..+ ++|+.|++++|++++.. +..+....++|++|++++|.++
T Consensus 159 ~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~ 238 (362)
T 3goz_A 159 IQILAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLH 238 (362)
T ss_dssp HHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCSSCCC
T ss_pred HHHHhcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEECcCCCCC
Confidence 33334444 677777777777654411111234444 36777777777766532 2333332346666666666665
Q ss_pred cc
Q 037325 458 GR 459 (598)
Q Consensus 458 ~~ 459 (598)
+.
T Consensus 239 ~~ 240 (362)
T 3goz_A 239 GP 240 (362)
T ss_dssp CC
T ss_pred cH
Confidence 43
|
| >3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} | Back alignment and structure |
|---|
Probab=99.90 E-value=1.2e-24 Score=219.95 Aligned_cols=271 Identities=18% Similarity=0.144 Sum_probs=178.5
Q ss_pred EEEccCCcccccCCccccCCCCccEEECcCCCcCccccc----hhhcCCC-CCCEEecccccCCcccchhhhCCCCCCCC
Q 037325 268 CLDLGSNDLQGDIPDGFASLNSLQELDLSGNSFLGGQLS----RNLGKLC-NLRTMILSRNNISSEVSDFLDGLSECTNS 342 (598)
Q Consensus 268 ~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~----~~l~~l~-~L~~L~l~~n~l~~~~~~~~~~l~~~~~~ 342 (598)
.+.++.|.+++.+|..+...++|++|++++|. +....+ ..+..++ +|++|++++|.+++..+..+..+-.. .+
T Consensus 2 ~~~ls~n~~~~~~~~~~~~~~~L~~L~Ls~n~-l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~-~~ 79 (362)
T 3goz_A 2 NYKLTLHPGSNPVEEFTSIPHGVTSLDLSLNN-LYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAA-IP 79 (362)
T ss_dssp EEECCCCTTCCHHHHHHTSCTTCCEEECTTSC-GGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHT-SC
T ss_pred ccccccccchHHHHHHHhCCCCceEEEccCCC-CChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhc-cC
Confidence 46788888888888777777779999999998 555555 6777888 89999999999988777666553000 00
Q ss_pred CCccEEEccCccccccCcccc----CCC-CCCCEEEccCCcCCccchhhc----cC-CCCCCEEeCcCCcCCcccCCCch
Q 037325 343 ILLEKLELRFNQFTGILPISL----GSL-KNLRHLVLWQNSFLGSIPPSI----GN-LTLLKELYLASNQMNGQKISDSY 412 (598)
Q Consensus 343 ~~L~~L~Ls~n~l~~~~~~~l----~~l-~~L~~L~ls~n~l~~~~~~~l----~~-l~~L~~L~l~~n~l~~~~~~~~~ 412 (598)
++|++|++++|.+++..+..+ ..+ ++|++|++++|++++..+..+ .. .++|++|++++|.+++.......
T Consensus 80 ~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~ 159 (362)
T 3goz_A 80 ANVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELI 159 (362)
T ss_dssp TTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHH
T ss_pred CCccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHH
Confidence 179999999998887666533 344 789999999998876665443 33 35888899988888754422222
Q ss_pred hhhcCCC-CCCEEEccCccCccccchHHHhc---C-CCCCEEEccCCcCcccCCCCcccCCCCEEEcccCcCcccCCCCC
Q 037325 413 QHLKNQT-ELRTLVLNKARISDTISDWFWQL---S-LTLDELDVAYNELRGRVPNSLGFNFPAKVDLSFNNFEGRLLLWS 487 (598)
Q Consensus 413 ~~l~~~~-~L~~L~l~~n~l~~~~~~~~~~~---~-~~L~~L~ls~n~~~~~~p~~~~~~~L~~l~ls~n~l~~~~~~~~ 487 (598)
..+...+ +|++|++++|++++..+..+... + ++|++|++++|.+++.....+.. .+....
T Consensus 160 ~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~---------------~l~~~~ 224 (362)
T 3goz_A 160 QILAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAY---------------IFSSIP 224 (362)
T ss_dssp HHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHH---------------HHHHSC
T ss_pred HHHhcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHH---------------HHhcCC
Confidence 3345554 88888888888887766554432 3 47888888888776532211110 000012
Q ss_pred cCCcEEEccCCcccccCCchhhcccCCCCCccccCCCCeEeCcCCccccc-------cchhccCCCCCCEEECCCCcCcc
Q 037325 488 FNVTKLYLRDNSFSGLIPNDIGQNLPFLTDLGNLKQLITLVISNNNLSGE-------IPLLFSNISFLYILDMSNNSLSG 560 (598)
Q Consensus 488 ~~L~~L~ls~n~l~~~~p~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~-------~p~~~~~l~~L~~L~ls~N~l~~ 560 (598)
++|++||+++|++++..+..+.. .+..+++|+.|+|++|.+.+. ++..+.++++|++||+++|++.+
T Consensus 225 ~~L~~L~Ls~N~l~~~~~~~l~~------~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N~l~~ 298 (362)
T 3goz_A 225 NHVVSLNLCLNCLHGPSLENLKL------LKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEIHP 298 (362)
T ss_dssp TTCCEEECCSSCCCCCCHHHHHH------TTTTTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTTCCEEEEECTTSCBCCG
T ss_pred CCceEEECcCCCCCcHHHHHHHH------HHhcCCCccEEEeccCCccccCHHHHHHHHHHhccCCceEEEecCCCcCCC
Confidence 36777777777776554433332 113356777777777774432 33456677777777777777765
Q ss_pred c
Q 037325 561 S 561 (598)
Q Consensus 561 ~ 561 (598)
.
T Consensus 299 ~ 299 (362)
T 3goz_A 299 S 299 (362)
T ss_dssp G
T ss_pred c
Confidence 5
|
| >2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A | Back alignment and structure |
|---|
Probab=99.89 E-value=5.5e-24 Score=213.13 Aligned_cols=270 Identities=21% Similarity=0.245 Sum_probs=172.6
Q ss_pred CCCCCcccEEecCCCCcEEEEEcCCCCCCCCCCcccCCCCCcceecCccccCC--CCCCEEeCCCCCCCCCCcchhccCC
Q 037325 60 EDCCSWSGVSCNNRTASVIKLNLNNPFRDSFGSFEDDAGHELGGEISPSLLQL--KDLEYLDLSMNNFTGFQVPEFIGSL 137 (598)
Q Consensus 60 ~~~c~w~gv~c~~~~~~v~~L~L~~~~~~~~~~~~~~~~~~l~~~~~~~l~~l--~~L~~L~Ls~n~l~~~~~p~~~~~l 137 (598)
..|.+|.++.|+ ...++.+|+++ +.+. +..+..+ +++++|++++|.+.+. .+. +..+
T Consensus 34 ~vc~~W~~~~~~--~~~~~~l~l~~--------------~~~~---~~~~~~~~~~~l~~L~l~~n~l~~~-~~~-~~~~ 92 (336)
T 2ast_B 34 GVCKRWYRLASD--ESLWQTLDLTG--------------KNLH---PDVTGRLLSQGVIAFRCPRSFMDQP-LAE-HFSP 92 (336)
T ss_dssp SSCHHHHHHHTC--STTSSEEECTT--------------CBCC---HHHHHHHHHTTCSEEECTTCEECSC-CCS-CCCC
T ss_pred HHHHHHHHHhcC--chhheeecccc--------------ccCC---HHHHHhhhhccceEEEcCCcccccc-chh-hccC
Confidence 445669888875 34577889987 4554 3456666 8999999999999864 444 5679
Q ss_pred CCCCEEECcCCCCCcc-cchhccCCCCCCEEEccCCCCCCCccChhhhcCCCCCcEEEcCCC-CCCCCcccchHhhhcCC
Q 037325 138 KELRYLNLSGSFFSGT-IPQTLGNLSNLLYLDLNNFLDQSNQIDLEWLSGLSSLVYFNLGGA-DLSKAGAYWLEVFNKLH 215 (598)
Q Consensus 138 ~~L~~L~L~~n~l~~~-~p~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~~l~~L~~L~l~~n-~~~~~~~~~~~~~~~l~ 215 (598)
++|++|++++|.+++. +|..+..+++|++|++++|.+. ......+..+++|++|++++| .+++.. ++..+..++
T Consensus 93 ~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~--~~~~~~l~~~~~L~~L~L~~~~~l~~~~--l~~~~~~~~ 168 (336)
T 2ast_B 93 FRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLS--DPIVNTLAKNSNLVRLNLSGCSGFSEFA--LQTLLSSCS 168 (336)
T ss_dssp BCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCC--HHHHHHHTTCTTCSEEECTTCBSCCHHH--HHHHHHHCT
T ss_pred CCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCcCcccC--HHHHHHHhcCCCCCEEECCCCCCCCHHH--HHHHHhcCC
Confidence 9999999999998865 8888899999999999988543 233445777888888888888 565421 145567777
Q ss_pred CCCEEEcCCC-CCCCCCCCCCcCCCC-CccEEEccCC--CCC-CCcchhhhcCCCCCEEEccCCc-ccccCCccccCCCC
Q 037325 216 SFVELHLPNC-NLPSLPLSFPSLNFA-SLQVLDLSNN--DFN-STTPHWLFNITSLLCLDLGSND-LQGDIPDGFASLNS 289 (598)
Q Consensus 216 ~L~~L~l~~~-~l~~~~~~~~~~~l~-~L~~L~L~~n--~l~-~~~~~~l~~l~~L~~L~l~~n~-l~~~~~~~l~~l~~ 289 (598)
+|++|++++| .+++......+..++ +|++|++++| .++ +.++..+.++++|+.|++++|. +++..+..+..+++
T Consensus 169 ~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~ 248 (336)
T 2ast_B 169 RLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNY 248 (336)
T ss_dssp TCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTT
T ss_pred CCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeCCCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHHhCCCC
Confidence 7777777777 666432113344556 6777777776 344 3445555666667777776666 55455555666666
Q ss_pred ccEEECcCCCcCccccchhhcCCCCCCEEecccccCCcccchhhhCCCCCCCCCCccEEEccCccccccCcccc
Q 037325 290 LQELDLSGNSFLGGQLSRNLGKLCNLRTMILSRNNISSEVSDFLDGLSECTNSILLEKLELRFNQFTGILPISL 363 (598)
Q Consensus 290 L~~L~l~~n~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~~~~~~~L~~L~Ls~n~l~~~~~~~l 363 (598)
|++|++++|..........+..+++|+.|++++| +.......+.. .++.|++++|++++..|..+
T Consensus 249 L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~-i~~~~~~~l~~--------~l~~L~l~~n~l~~~~~~~~ 313 (336)
T 2ast_B 249 LQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI-VPDGTLQLLKE--------ALPHLQINCSHFTTIARPTI 313 (336)
T ss_dssp CCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS-SCTTCHHHHHH--------HSTTSEESCCCSCCTTCSSC
T ss_pred CCEeeCCCCCCCCHHHHHHHhcCCCCCEEeccCc-cCHHHHHHHHh--------hCcceEEecccCccccCCcc
Confidence 6666666664122222234555666666666665 33222222211 24444455555555555443
|
| >3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A | Back alignment and structure |
|---|
Probab=99.89 E-value=2.2e-22 Score=194.77 Aligned_cols=178 Identities=28% Similarity=0.300 Sum_probs=74.9
Q ss_pred CCCCCEEECcCCCCCcccchhccCCCCCCEEEccCCCCCCCccChhhhcCCCCCcEEEcCCCCCCCCcccchHhhhcCCC
Q 037325 137 LKELRYLNLSGSFFSGTIPQTLGNLSNLLYLDLNNFLDQSNQIDLEWLSGLSSLVYFNLGGADLSKAGAYWLEVFNKLHS 216 (598)
Q Consensus 137 l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~l~~ 216 (598)
+++|++|++++|.++ .++ .+..+++|++|++++|.+... ..+..+++|++|++++|.+.+.. +..+..+++
T Consensus 40 l~~L~~L~l~~~~i~-~~~-~l~~l~~L~~L~l~~n~l~~~----~~l~~l~~L~~L~L~~n~l~~~~---~~~~~~l~~ 110 (272)
T 3rfs_A 40 LNSIDQIIANNSDIK-SVQ-GIQYLPNVRYLALGGNKLHDI----SALKELTNLTYLILTGNQLQSLP---NGVFDKLTN 110 (272)
T ss_dssp HTTCCEEECTTSCCC-CCT-TGGGCTTCCEEECTTSCCCCC----GGGTTCTTCCEEECTTSCCCCCC---TTTTTTCTT
T ss_pred ccceeeeeeCCCCcc-ccc-ccccCCCCcEEECCCCCCCCc----hhhcCCCCCCEEECCCCccCccC---hhHhcCCcC
Confidence 444444444444443 222 233444444444444332211 12333444444444444444332 223344444
Q ss_pred CCEEEcCCCCCCCCCCCCCcCCCCCccEEEccCCCCCCCcchhhhcCCCCCEEEccCCcccccCCccccCCCCccEEECc
Q 037325 217 FVELHLPNCNLPSLPLSFPSLNFASLQVLDLSNNDFNSTTPHWLFNITSLLCLDLGSNDLQGDIPDGFASLNSLQELDLS 296 (598)
Q Consensus 217 L~~L~l~~~~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~ 296 (598)
|++|++++|.+++.++ ..+..+++|++|++++|++++..+..+..+++|+.|++++|.+++..+..+..+++|++|+++
T Consensus 111 L~~L~L~~n~l~~~~~-~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~ 189 (272)
T 3rfs_A 111 LKELVLVENQLQSLPD-GVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLY 189 (272)
T ss_dssp CCEEECTTSCCCCCCT-TTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred CCEEECCCCcCCccCH-HHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCCcCccCHHHhcCCccCCEEECC
Confidence 4444444444444433 233344444555554444444444444444444444444444443333334444444444444
Q ss_pred CCCcCccccchhhcCCCCCCEEecccccC
Q 037325 297 GNSFLGGQLSRNLGKLCNLRTMILSRNNI 325 (598)
Q Consensus 297 ~n~~~~~~~~~~l~~l~~L~~L~l~~n~l 325 (598)
+|. +.+..+..+..+++|++|++++|.+
T Consensus 190 ~N~-l~~~~~~~~~~l~~L~~L~l~~N~~ 217 (272)
T 3rfs_A 190 QNQ-LKSVPDGVFDRLTSLQYIWLHDNPW 217 (272)
T ss_dssp SSC-CSCCCTTTTTTCTTCCEEECCSSCB
T ss_pred CCc-CCccCHHHHhCCcCCCEEEccCCCc
Confidence 444 2333333344444444444444433
|
| >2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* | Back alignment and structure |
|---|
Probab=99.88 E-value=7.7e-22 Score=191.53 Aligned_cols=205 Identities=23% Similarity=0.267 Sum_probs=97.5
Q ss_pred CccEEEccCCCCCCCcchhhhcCCCCCEEEccCCcccccCCccccCCCCccEEECcCCCcCccccchhhcCCCCCCEEec
Q 037325 241 SLQVLDLSNNDFNSTTPHWLFNITSLLCLDLGSNDLQGDIPDGFASLNSLQELDLSGNSFLGGQLSRNLGKLCNLRTMIL 320 (598)
Q Consensus 241 ~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~l~~l~~L~~L~l 320 (598)
++++|++++|++++..+..+.++++|++|++++|.+.+..+..+..+++|++|++++|. +.+..+..+..+++|++|++
T Consensus 29 ~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~l 107 (276)
T 2z62_A 29 STKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNP-IQSLALGAFSGLSSLQKLVA 107 (276)
T ss_dssp TCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCC-CCEECTTTTTTCTTCCEEEC
T ss_pred CccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCc-cCccChhhhcCCccccEEEC
Confidence 45555555555554444455555555555555555554444445555555555555555 33334444555555555555
Q ss_pred ccccCCcccchhhhCCCCCCCCCCccEEEccCcccccc-CccccCCCCCCCEEEccCCcCCccchhhccCCCCCC----E
Q 037325 321 SRNNISSEVSDFLDGLSECTNSILLEKLELRFNQFTGI-LPISLGSLKNLRHLVLWQNSFLGSIPPSIGNLTLLK----E 395 (598)
Q Consensus 321 ~~n~l~~~~~~~~~~l~~~~~~~~L~~L~Ls~n~l~~~-~~~~l~~l~~L~~L~ls~n~l~~~~~~~l~~l~~L~----~ 395 (598)
++|.+.+..+..+..++ +|++|++++|.+++. +|..+..+++|++|++++|++++..+..+..+++|+ +
T Consensus 108 ~~n~l~~~~~~~~~~l~------~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~l~l~ 181 (276)
T 2z62_A 108 VETNLASLENFPIGHLK------TLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLS 181 (276)
T ss_dssp TTSCCCCSTTCCCTTCT------TCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCEE
T ss_pred CCCCccccCchhcccCC------CCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCcCCHHHhhhhhhcccccee
Confidence 55555444333333333 455555555555432 344455555555555555555544333343333333 4
Q ss_pred EeCcCCcCCcccCCCchhhhcCCCCCCEEEccCccCccccchHHHhcCCCCCEEEccCCcCcc
Q 037325 396 LYLASNQMNGQKISDSYQHLKNQTELRTLVLNKARISDTISDWFWQLSLTLDELDVAYNELRG 458 (598)
Q Consensus 396 L~l~~n~l~~~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~ls~n~~~~ 458 (598)
|++++|.+++.. +. .....+|+.|++++|++++..+..+.. +++|++|++++|++.+
T Consensus 182 L~ls~n~l~~~~-~~----~~~~~~L~~L~L~~n~l~~~~~~~~~~-l~~L~~L~l~~N~~~c 238 (276)
T 2z62_A 182 LDLSLNPMNFIQ-PG----AFKEIRLKELALDTNQLKSVPDGIFDR-LTSLQKIWLHTNPWDC 238 (276)
T ss_dssp EECCSSCCCEEC-TT----SSCSCCEEEEECCSSCCSCCCTTTTTT-CCSCCEEECCSSCBCC
T ss_pred eecCCCcccccC-cc----ccCCCcccEEECCCCceeecCHhHhcc-cccccEEEccCCcccc
Confidence 555555554432 21 111224444555554444333322222 3444444444444443
|
| >2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* | Back alignment and structure |
|---|
Probab=99.88 E-value=6.6e-22 Score=192.00 Aligned_cols=206 Identities=22% Similarity=0.218 Sum_probs=130.5
Q ss_pred CcEEEcCCCCCCCCcccchHhhhcCCCCCEEEcCCCCCCCCCCCCCcCCCCCccEEEccCCCCCCCcchhhhcCCCCCEE
Q 037325 190 LVYFNLGGADLSKAGAYWLEVFNKLHSFVELHLPNCNLPSLPLSFPSLNFASLQVLDLSNNDFNSTTPHWLFNITSLLCL 269 (598)
Q Consensus 190 L~~L~l~~n~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L 269 (598)
|++|++++|.+.... +..+..+++|++|++++|.+++.+. ..+..+++|++|++++|.+++..+..+.++++|++|
T Consensus 30 l~~L~ls~n~l~~~~---~~~~~~l~~L~~L~l~~n~l~~~~~-~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 105 (276)
T 2z62_A 30 TKNLDLSFNPLRHLG---SYSFFSFPELQVLDLSRCEIQTIED-GAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKL 105 (276)
T ss_dssp CCEEECTTCCCCEEC---TTTTTTCTTCSEEECTTCCCCEECT-TTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEE
T ss_pred ccEEECCCCcccccC---HhHhccccCCcEEECCCCcCCccCH-HHccCCcCCCEEECCCCccCccChhhhcCCccccEE
Confidence 444444444444432 2345556666666666666655544 445566777777777777776666667777777777
Q ss_pred EccCCcccccCCccccCCCCccEEECcCCCcCccccchhhcCCCCCCEEecccccCCcccchhhhCCCCCCCCCCcc---
Q 037325 270 DLGSNDLQGDIPDGFASLNSLQELDLSGNSFLGGQLSRNLGKLCNLRTMILSRNNISSEVSDFLDGLSECTNSILLE--- 346 (598)
Q Consensus 270 ~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~~~~~~~L~--- 346 (598)
++++|.+.+..+..+..+++|++|++++|.+....+|..+..+++|++|++++|++++..+..+..+. +|+
T Consensus 106 ~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~------~L~~l~ 179 (276)
T 2z62_A 106 VAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLH------QMPLLN 179 (276)
T ss_dssp ECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHH------TCTTCC
T ss_pred ECCCCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCcCCHHHhhhhh------hccccc
Confidence 77777777555556777777777777777743334567777777777777777777766655555444 343
Q ss_pred -EEEccCccccccCccccCCCCCCCEEEccCCcCCccchhhccCCCCCCEEeCcCCcCCcc
Q 037325 347 -KLELRFNQFTGILPISLGSLKNLRHLVLWQNSFLGSIPPSIGNLTLLKELYLASNQMNGQ 406 (598)
Q Consensus 347 -~L~Ls~n~l~~~~~~~l~~l~~L~~L~ls~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~ 406 (598)
+|++++|.+++..+..+ ...+|+.|++++|++++..+..+..+++|++|++++|++++.
T Consensus 180 l~L~ls~n~l~~~~~~~~-~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~ 239 (276)
T 2z62_A 180 LSLDLSLNPMNFIQPGAF-KEIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCS 239 (276)
T ss_dssp EEEECCSSCCCEECTTSS-CSCCEEEEECCSSCCSCCCTTTTTTCCSCCEEECCSSCBCCC
T ss_pred eeeecCCCcccccCcccc-CCCcccEEECCCCceeecCHhHhcccccccEEEccCCccccc
Confidence 67777777765444333 334677777777777655444556677777777777766543
|
| >2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A | Back alignment and structure |
|---|
Probab=99.88 E-value=2.9e-23 Score=211.91 Aligned_cols=248 Identities=20% Similarity=0.233 Sum_probs=169.5
Q ss_pred cccchhhcCCCCCCEEecccccCCcccchh----hhCCCCCCCCCCccEEEccCc---cccccCcccc-------CCCCC
Q 037325 303 GQLSRNLGKLCNLRTMILSRNNISSEVSDF----LDGLSECTNSILLEKLELRFN---QFTGILPISL-------GSLKN 368 (598)
Q Consensus 303 ~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~----~~~l~~~~~~~~L~~L~Ls~n---~l~~~~~~~l-------~~l~~ 368 (598)
..++..+..+++|++|++++|.+.+..+.. +..++ +|++|++++| .+.+.+|..+ ..+++
T Consensus 22 ~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~------~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~ 95 (386)
T 2ca6_A 22 KSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKK------DLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPK 95 (386)
T ss_dssp HTTSHHHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCT------TCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTT
T ss_pred HHHHHHHhcCCCccEEECCCCCCCHHHHHHHHHHHHhCC------CccEEeCcccccCccccchhHHHHHHHHHHhhCCc
Confidence 345666777888899999888888765544 33444 7888888885 3444555444 67788
Q ss_pred CCEEEccCCcCCc----cchhhccCCCCCCEEeCcCCcCCcccCCCchhhhcCC---------CCCCEEEccCccCccc-
Q 037325 369 LRHLVLWQNSFLG----SIPPSIGNLTLLKELYLASNQMNGQKISDSYQHLKNQ---------TELRTLVLNKARISDT- 434 (598)
Q Consensus 369 L~~L~ls~n~l~~----~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~~---------~~L~~L~l~~n~l~~~- 434 (598)
|++|++++|.+.+ .++..+..+++|++|++++|.+++.........+..+ ++|++|++++|++++.
T Consensus 96 L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~ 175 (386)
T 2ca6_A 96 LHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGS 175 (386)
T ss_dssp CCEEECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGG
T ss_pred ccEEECCCCcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHH
Confidence 8888888888876 3666777788888888888887643311111223333 6788888888877633
Q ss_pred cch---HHHhcCCCCCEEEccCCcCccc-----CCCCcccCCCCEEEcccCcCcccCCCCCcCCcEEEccCCccc----c
Q 037325 435 ISD---WFWQLSLTLDELDVAYNELRGR-----VPNSLGFNFPAKVDLSFNNFEGRLLLWSFNVTKLYLRDNSFS----G 502 (598)
Q Consensus 435 ~~~---~~~~~~~~L~~L~ls~n~~~~~-----~p~~~~~~~L~~l~ls~n~l~~~~~~~~~~L~~L~ls~n~l~----~ 502 (598)
++. .+. .+++|++|++++|.++.. .|..+ ..+++|+.|+|++|+++ +
T Consensus 176 ~~~l~~~l~-~~~~L~~L~L~~n~l~~~g~~~l~~~~l--------------------~~~~~L~~L~Ls~n~l~~~g~~ 234 (386)
T 2ca6_A 176 MKEWAKTFQ-SHRLLHTVKMVQNGIRPEGIEHLLLEGL--------------------AYCQELKVLDLQDNTFTHLGSS 234 (386)
T ss_dssp HHHHHHHHH-HCTTCCEEECCSSCCCHHHHHHHHHTTG--------------------GGCTTCCEEECCSSCCHHHHHH
T ss_pred HHHHHHHHH-hCCCcCEEECcCCCCCHhHHHHHHHHHh--------------------hcCCCccEEECcCCCCCcHHHH
Confidence 332 222 356777777777766521 11111 12467888888888885 4
Q ss_pred cCCchhhcccCCCCCccccCCCCeEeCcCCccccc----cchhc--cCCCCCCEEECCCCcCcc----ccchhc-cCCCC
Q 037325 503 LIPNDIGQNLPFLTDLGNLKQLITLVISNNNLSGE----IPLLF--SNISFLYILDMSNNSLSG----STPESI-GSLRT 571 (598)
Q Consensus 503 ~~p~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~----~p~~~--~~l~~L~~L~ls~N~l~~----~~p~~l-~~l~~ 571 (598)
.+|..+.. +++|+.|+|++|.+++. +|..+ +++++|++|+|++|++++ .+|..+ .++++
T Consensus 235 ~l~~~l~~----------~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~ 304 (386)
T 2ca6_A 235 ALAIALKS----------WPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPD 304 (386)
T ss_dssp HHHHHGGG----------CTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHcc----------CCCcCEEECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCC
Confidence 56666655 78888888888888765 56666 348888888888888887 477777 66788
Q ss_pred CCEEEccCCCCcccCC
Q 037325 572 VKFLVLRNNYLSGKLP 587 (598)
Q Consensus 572 L~~L~l~~n~l~g~~P 587 (598)
|++|++++|++++..|
T Consensus 305 L~~L~l~~N~l~~~~~ 320 (386)
T 2ca6_A 305 LLFLELNGNRFSEEDD 320 (386)
T ss_dssp CCEEECTTSBSCTTSH
T ss_pred ceEEEccCCcCCcchh
Confidence 8888888888887654
|
| >2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A | Back alignment and structure |
|---|
Probab=99.88 E-value=5.9e-24 Score=217.07 Aligned_cols=209 Identities=24% Similarity=0.232 Sum_probs=123.0
Q ss_pred CCCccEEEccCCCCCC----CcchhhhcCCCCCEEEccCCcccccCCcccc----CC---------CCccEEECcCCCcC
Q 037325 239 FASLQVLDLSNNDFNS----TTPHWLFNITSLLCLDLGSNDLQGDIPDGFA----SL---------NSLQELDLSGNSFL 301 (598)
Q Consensus 239 l~~L~~L~L~~n~l~~----~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~----~l---------~~L~~L~l~~n~~~ 301 (598)
+++|++|++++|.+++ .++..+..+++|++|++++|.+++..+..+. .+ ++|++|++++|.+.
T Consensus 93 ~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~ 172 (386)
T 2ca6_A 93 CPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLE 172 (386)
T ss_dssp CTTCCEEECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCT
T ss_pred CCcccEEECCCCcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCC
Confidence 3444455555555444 2455556666666666666666533222222 22 67777777777743
Q ss_pred ccccc---hhhcCCCCCCEEecccccCCcc-----cchhhhCCCCCCCCCCccEEEccCcccc----ccCccccCCCCCC
Q 037325 302 GGQLS---RNLGKLCNLRTMILSRNNISSE-----VSDFLDGLSECTNSILLEKLELRFNQFT----GILPISLGSLKNL 369 (598)
Q Consensus 302 ~~~~~---~~l~~l~~L~~L~l~~n~l~~~-----~~~~~~~l~~~~~~~~L~~L~Ls~n~l~----~~~~~~l~~l~~L 369 (598)
...++ ..+..+++|++|++++|++... .+..+..++ +|++|++++|.++ +.+|..+..+++|
T Consensus 173 ~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~------~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L 246 (386)
T 2ca6_A 173 NGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQ------ELKVLDLQDNTFTHLGSSALAIALKSWPNL 246 (386)
T ss_dssp GGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCT------TCCEEECCSSCCHHHHHHHHHHHGGGCTTC
T ss_pred cHHHHHHHHHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCC------CccEEECcCCCCCcHHHHHHHHHHccCCCc
Confidence 24444 3556677777777777777632 121344444 6777777777775 4566667777778
Q ss_pred CEEEccCCcCCcc----chhhcc--CCCCCCEEeCcCCcCCcccCCCchhhh-cCCCCCCEEEccCccCccccc--hHHH
Q 037325 370 RHLVLWQNSFLGS----IPPSIG--NLTLLKELYLASNQMNGQKISDSYQHL-KNQTELRTLVLNKARISDTIS--DWFW 440 (598)
Q Consensus 370 ~~L~ls~n~l~~~----~~~~l~--~l~~L~~L~l~~n~l~~~~~~~~~~~l-~~~~~L~~L~l~~n~l~~~~~--~~~~ 440 (598)
++|++++|++++. ++..+. .+++|++|++++|.+++..+......+ .++++|+.|++++|++++..+ ..+.
T Consensus 247 ~~L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~~~~~~~~~l~ 326 (386)
T 2ca6_A 247 RELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEEDDVVDEIR 326 (386)
T ss_dssp CEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCTTSHHHHHHH
T ss_pred CEEECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCcCCcchhHHHHHH
Confidence 8888888877655 445553 377788888888877752100111223 446777888888887776663 4444
Q ss_pred hcCCCCCEEEccC
Q 037325 441 QLSLTLDELDVAY 453 (598)
Q Consensus 441 ~~~~~L~~L~ls~ 453 (598)
..++.+...++..
T Consensus 327 ~~l~~~~~~~l~~ 339 (386)
T 2ca6_A 327 EVFSTRGRGELDE 339 (386)
T ss_dssp HHHHHHTCCEECC
T ss_pred HHhhhcCcchhhh
Confidence 4444544444433
|
| >3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A | Back alignment and structure |
|---|
Probab=99.88 E-value=5.9e-22 Score=191.72 Aligned_cols=206 Identities=25% Similarity=0.284 Sum_probs=118.6
Q ss_pred hhcCCCCCEEEcCCCCCCCCCCCCCcCCCCCccEEEccCCCCCCCcchhhhcCCCCCEEEccCCcccccCCccccCCCCc
Q 037325 211 FNKLHSFVELHLPNCNLPSLPLSFPSLNFASLQVLDLSNNDFNSTTPHWLFNITSLLCLDLGSNDLQGDIPDGFASLNSL 290 (598)
Q Consensus 211 ~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L 290 (598)
...+++|++|++++|.++..+ .+..+++|++|++++|.+++. ..+..+++|++|++++|.+++..+..+..+++|
T Consensus 37 ~~~l~~L~~L~l~~~~i~~~~---~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L 111 (272)
T 3rfs_A 37 QNELNSIDQIIANNSDIKSVQ---GIQYLPNVRYLALGGNKLHDI--SALKELTNLTYLILTGNQLQSLPNGVFDKLTNL 111 (272)
T ss_dssp HHHHTTCCEEECTTSCCCCCT---TGGGCTTCCEEECTTSCCCCC--GGGTTCTTCCEEECTTSCCCCCCTTTTTTCTTC
T ss_pred cccccceeeeeeCCCCccccc---ccccCCCCcEEECCCCCCCCc--hhhcCCCCCCEEECCCCccCccChhHhcCCcCC
Confidence 344555666666666555543 244556666666666666542 245566666666666666665444555666666
Q ss_pred cEEECcCCCcCccccchhhcCCCCCCEEecccccCCcccchhhhCCCCCCCCCCccEEEccCccccccCccccCCCCCCC
Q 037325 291 QELDLSGNSFLGGQLSRNLGKLCNLRTMILSRNNISSEVSDFLDGLSECTNSILLEKLELRFNQFTGILPISLGSLKNLR 370 (598)
Q Consensus 291 ~~L~l~~n~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~l~~L~ 370 (598)
++|++++|. +.+..+..+..+++|++|++++|.+++..+..+..++ +|++|++++|++++..+..+..+++|+
T Consensus 112 ~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~------~L~~L~l~~n~l~~~~~~~~~~l~~L~ 184 (272)
T 3rfs_A 112 KELVLVENQ-LQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLT------NLTELDLSYNQLQSLPEGVFDKLTQLK 184 (272)
T ss_dssp CEEECTTSC-CCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCT------TCCEEECCSSCCCCCCTTTTTTCTTCC
T ss_pred CEEECCCCc-CCccCHHHhccCCCCCEEECCCCccCccCHHHhccCc------cCCEEECCCCCcCccCHHHhcCCccCC
Confidence 666666666 4444444555666666666666666655554455444 566666666666655554556666666
Q ss_pred EEEccCCcCCccchhhccCCCCCCEEeCcCCcCCcccCCCchhhhcCCCCCCEEEccCccCccccchHH
Q 037325 371 HLVLWQNSFLGSIPPSIGNLTLLKELYLASNQMNGQKISDSYQHLKNQTELRTLVLNKARISDTISDWF 439 (598)
Q Consensus 371 ~L~ls~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~ 439 (598)
+|++++|++.+..+..+..+++|++|++++|.+.+. ++.|+.+++..|.++|.+|..+
T Consensus 185 ~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~-----------~~~l~~l~~~~n~~~g~ip~~~ 242 (272)
T 3rfs_A 185 DLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDCT-----------CPGIRYLSEWINKHSGVVRNSA 242 (272)
T ss_dssp EEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCC-----------TTTTHHHHHHHHHTGGGBBCTT
T ss_pred EEECCCCcCCccCHHHHhCCcCCCEEEccCCCcccc-----------CcHHHHHHHHHHhCCCcccCcc
Confidence 666666666655555556666666666666655432 2345555555555555555443
|
| >1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A | Back alignment and structure |
|---|
Probab=99.88 E-value=4.4e-21 Score=186.99 Aligned_cols=204 Identities=22% Similarity=0.177 Sum_probs=147.1
Q ss_pred cccCCCCCCEEeCCCCCCCCCCcchhccCCCCCCEEECcCCCCCcccchhccCCCCCCEEEccCCCCCCCccChhhhcCC
Q 037325 108 SLLQLKDLEYLDLSMNNFTGFQVPEFIGSLKELRYLNLSGSFFSGTIPQTLGNLSNLLYLDLNNFLDQSNQIDLEWLSGL 187 (598)
Q Consensus 108 ~l~~l~~L~~L~Ls~n~l~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~~l 187 (598)
.+.+++++++++++++.++ .+|..+. +++++|++++|.+++..|..|..+++|++|++++|.+..... ...+
T Consensus 5 ~~~~l~~l~~l~~~~~~l~--~ip~~~~--~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~----~~~l 76 (290)
T 1p9a_G 5 EVSKVASHLEVNCDKRNLT--ALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQV----DGTL 76 (290)
T ss_dssp EEECSTTCCEEECTTSCCS--SCCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEEC----CSCC
T ss_pred cccccCCccEEECCCCCCC--cCCCCCC--CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccC----CCCC
Confidence 4678899999999999998 4676554 789999999999987778888999999999999887654332 2677
Q ss_pred CCCcEEEcCCCCCCCCcccchHhhhcCCCCCEEEcCCCCCCCCCCCCCcCCCCCccEEEccCCCCCCCcchhhhcCCCCC
Q 037325 188 SSLVYFNLGGADLSKAGAYWLEVFNKLHSFVELHLPNCNLPSLPLSFPSLNFASLQVLDLSNNDFNSTTPHWLFNITSLL 267 (598)
Q Consensus 188 ~~L~~L~l~~n~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~ 267 (598)
++|++|++++|.+... +..+..+++|++|++++|.++.+++ ..+..+++|++|++++|++++..+..+..+++|+
T Consensus 77 ~~L~~L~Ls~N~l~~l----~~~~~~l~~L~~L~l~~N~l~~l~~-~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~ 151 (290)
T 1p9a_G 77 PVLGTLDLSHNQLQSL----PLLGQTLPALTVLDVSFNRLTSLPL-GALRGLGELQELYLKGNELKTLPPGLLTPTPKLE 151 (290)
T ss_dssp TTCCEEECCSSCCSSC----CCCTTTCTTCCEEECCSSCCCCCCS-STTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCC
T ss_pred CcCCEEECCCCcCCcC----chhhccCCCCCEEECCCCcCcccCH-HHHcCCCCCCEEECCCCCCCccChhhcccccCCC
Confidence 7888888888877755 3456667777777777777777665 4566677777777777777766666666777777
Q ss_pred EEEccCCcccccCCccccCCCCccEEECcCCCcCccccchhhcCCCCCCEEecccccCC
Q 037325 268 CLDLGSNDLQGDIPDGFASLNSLQELDLSGNSFLGGQLSRNLGKLCNLRTMILSRNNIS 326 (598)
Q Consensus 268 ~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~l~~l~~L~~L~l~~n~l~ 326 (598)
.|++++|++++..+..+..+++|+.|++++|.+ ..+|..+...++|+.+++++|.+.
T Consensus 152 ~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~l--~~ip~~~~~~~~L~~l~L~~Np~~ 208 (290)
T 1p9a_G 152 KLSLANNNLTELPAGLLNGLENLDTLLLQENSL--YTIPKGFFGSHLLPFAFLHGNPWL 208 (290)
T ss_dssp EEECTTSCCSCCCTTTTTTCTTCCEEECCSSCC--CCCCTTTTTTCCCSEEECCSCCBC
T ss_pred EEECCCCcCCccCHHHhcCcCCCCEEECCCCcC--CccChhhcccccCCeEEeCCCCcc
Confidence 777777777644444456677777777777763 255555666666666666666554
|
| >2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} | Back alignment and structure |
|---|
Probab=99.87 E-value=5.6e-21 Score=184.65 Aligned_cols=182 Identities=26% Similarity=0.319 Sum_probs=99.4
Q ss_pred CCccEEEccCCCCCCCcchhhhcCCCCCEEEccCCcccccCCccccCCCCccEEECcCCCcCccccchhhcCCCCCCEEe
Q 037325 240 ASLQVLDLSNNDFNSTTPHWLFNITSLLCLDLGSNDLQGDIPDGFASLNSLQELDLSGNSFLGGQLSRNLGKLCNLRTMI 319 (598)
Q Consensus 240 ~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~l~~l~~L~~L~ 319 (598)
+++++|++++|++++..+..+.++++|++|++++|.++...+..+..+++|++|++++|. +....+..+..+++|++|+
T Consensus 37 ~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~ 115 (270)
T 2o6q_A 37 ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNK-LQALPIGVFDQLVNLAELR 115 (270)
T ss_dssp TTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECCSSC-CCCCCTTTTTTCSSCCEEE
T ss_pred CCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECCCCc-CCcCCHhHcccccCCCEEE
Confidence 345555555555554444445555555555555555553333334555555555555555 3333334455555566666
Q ss_pred cccccCCcccchhhhCCCCCCCCCCccEEEccCccccccCccccCCCCCCCEEEccCCcCCccchhhccCCCCCCEEeCc
Q 037325 320 LSRNNISSEVSDFLDGLSECTNSILLEKLELRFNQFTGILPISLGSLKNLRHLVLWQNSFLGSIPPSIGNLTLLKELYLA 399 (598)
Q Consensus 320 l~~n~l~~~~~~~~~~l~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~ls~n~l~~~~~~~l~~l~~L~~L~l~ 399 (598)
+++|.+.+..+..+..++ +|++|++++|.+++..+..+..+++|+.|++++|++++..+..+..+++|++|+++
T Consensus 116 l~~n~l~~~~~~~~~~l~------~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 189 (270)
T 2o6q_A 116 LDRNQLKSLPPRVFDSLT------KLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLD 189 (270)
T ss_dssp CCSSCCCCCCTTTTTTCT------TCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECC
T ss_pred CCCCccCeeCHHHhCcCc------CCCEEECCCCcCCccCHhHccCCcccceeEecCCcCcEeChhHhccCCCcCEEECC
Confidence 665555555555455444 56666666666654444445556666666666666665444455566666666666
Q ss_pred CCcCCcccCCCchhhhcCCCCCCEEEccCccCc
Q 037325 400 SNQMNGQKISDSYQHLKNQTELRTLVLNKARIS 432 (598)
Q Consensus 400 ~n~l~~~~~~~~~~~l~~~~~L~~L~l~~n~l~ 432 (598)
+|.+++.. +. .+..+++|+.|++++|.+.
T Consensus 190 ~N~l~~~~-~~---~~~~l~~L~~L~l~~N~~~ 218 (270)
T 2o6q_A 190 NNQLKRVP-EG---AFDSLEKLKMLQLQENPWD 218 (270)
T ss_dssp SSCCSCCC-TT---TTTTCTTCCEEECCSSCBC
T ss_pred CCcCCcCC-HH---HhccccCCCEEEecCCCee
Confidence 66665433 21 2445556666666666654
|
| >2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A | Back alignment and structure |
|---|
Probab=99.87 E-value=2.2e-22 Score=201.50 Aligned_cols=257 Identities=20% Similarity=0.210 Sum_probs=198.7
Q ss_pred CCcEEEcCCCCCCCCcccchHhhhcC--CCCCEEEcCCCCCCCCCCCCCcCCCCCccEEEccCCCCCCC-cchhhhcCCC
Q 037325 189 SLVYFNLGGADLSKAGAYWLEVFNKL--HSFVELHLPNCNLPSLPLSFPSLNFASLQVLDLSNNDFNST-TPHWLFNITS 265 (598)
Q Consensus 189 ~L~~L~l~~n~~~~~~~~~~~~~~~l--~~L~~L~l~~~~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~-~~~~l~~l~~ 265 (598)
.++.++++++.+. +..+..+ +.++.|++++|.+.+..+. ...+++|++|++++|.+++. ++..+..+++
T Consensus 48 ~~~~l~l~~~~~~------~~~~~~~~~~~l~~L~l~~n~l~~~~~~--~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~ 119 (336)
T 2ast_B 48 LWQTLDLTGKNLH------PDVTGRLLSQGVIAFRCPRSFMDQPLAE--HFSPFRVQHMDLSNSVIEVSTLHGILSQCSK 119 (336)
T ss_dssp TSSEEECTTCBCC------HHHHHHHHHTTCSEEECTTCEECSCCCS--CCCCBCCCEEECTTCEECHHHHHHHHTTBCC
T ss_pred hheeeccccccCC------HHHHHhhhhccceEEEcCCccccccchh--hccCCCCCEEEccCCCcCHHHHHHHHhhCCC
Confidence 3566666666554 2445555 7888888888888877653 45789999999999998765 7778889999
Q ss_pred CCEEEccCCcccccCCccccCCCCccEEECcCCCcCcc-ccchhhcCCCCCCEEecccc-cCCcc-cchhhhCCCCCCCC
Q 037325 266 LLCLDLGSNDLQGDIPDGFASLNSLQELDLSGNSFLGG-QLSRNLGKLCNLRTMILSRN-NISSE-VSDFLDGLSECTNS 342 (598)
Q Consensus 266 L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~-~~~~~l~~l~~L~~L~l~~n-~l~~~-~~~~~~~l~~~~~~ 342 (598)
|++|++++|.+++..+..+..+++|++|++++|..+++ .++..+..+++|++|++++| .+++. .+..+..++.
T Consensus 120 L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~---- 195 (336)
T 2ast_B 120 LQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSE---- 195 (336)
T ss_dssp CSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCT----
T ss_pred CCEEeCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhccc----
Confidence 99999999998888888888899999999999932443 46777888999999999999 88765 3444554441
Q ss_pred CCccEEEccCc--ccc-ccCccccCCCCCCCEEEccCCc-CCccchhhccCCCCCCEEeCcCCc-CCcccCCCchhhhcC
Q 037325 343 ILLEKLELRFN--QFT-GILPISLGSLKNLRHLVLWQNS-FLGSIPPSIGNLTLLKELYLASNQ-MNGQKISDSYQHLKN 417 (598)
Q Consensus 343 ~~L~~L~Ls~n--~l~-~~~~~~l~~l~~L~~L~ls~n~-l~~~~~~~l~~l~~L~~L~l~~n~-l~~~~~~~~~~~l~~ 417 (598)
+|++|++++| .++ +.++..+..+++|+.|++++|. +++..+..+..+++|++|++++|. ++ +..+..+.+
T Consensus 196 -~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~----~~~~~~l~~ 270 (336)
T 2ast_B 196 -TITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDII----PETLLELGE 270 (336)
T ss_dssp -TCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCC----GGGGGGGGG
T ss_pred -CCCEEEeCCCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCCCCCC----HHHHHHHhc
Confidence 6999999999 455 4466677789999999999998 777777888999999999999995 32 444456788
Q ss_pred CCCCCEEEccCccCccccchHHHhcCCCCCEEEccCCcCcccCCCCccc
Q 037325 418 QTELRTLVLNKARISDTISDWFWQLSLTLDELDVAYNELRGRVPNSLGF 466 (598)
Q Consensus 418 ~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~ls~n~~~~~~p~~~~~ 466 (598)
+++|+.|++++| +++.....+.. .+..|++++|++++..|..++.
T Consensus 271 ~~~L~~L~l~~~-i~~~~~~~l~~---~l~~L~l~~n~l~~~~~~~~~~ 315 (336)
T 2ast_B 271 IPTLKTLQVFGI-VPDGTLQLLKE---ALPHLQINCSHFTTIARPTIGN 315 (336)
T ss_dssp CTTCCEEECTTS-SCTTCHHHHHH---HSTTSEESCCCSCCTTCSSCSS
T ss_pred CCCCCEEeccCc-cCHHHHHHHHh---hCcceEEecccCccccCCcccc
Confidence 999999999999 55544343332 4666778999999888876654
|
| >4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.87 E-value=4e-22 Score=196.89 Aligned_cols=208 Identities=20% Similarity=0.180 Sum_probs=112.2
Q ss_pred CCCCEEecccccCCcccchhh--hCCCCCCCCCCccEEEccCccccccCc----cccCCCCCCCEEEccCCcCCccchhh
Q 037325 313 CNLRTMILSRNNISSEVSDFL--DGLSECTNSILLEKLELRFNQFTGILP----ISLGSLKNLRHLVLWQNSFLGSIPPS 386 (598)
Q Consensus 313 ~~L~~L~l~~n~l~~~~~~~~--~~l~~~~~~~~L~~L~Ls~n~l~~~~~----~~l~~l~~L~~L~ls~n~l~~~~~~~ 386 (598)
++|++|++++|.+.+..+..+ ..++ +|++|++++|.+++..+ ..+..+++|++|++++|++.+..+..
T Consensus 91 ~~L~~L~l~~n~l~~~~~~~~~~~~~~------~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~ 164 (310)
T 4glp_A 91 SRLKELTLEDLKITGTMPPLPLEATGL------ALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHSPAFSCEQ 164 (310)
T ss_dssp SCCCEEEEESCCCBSCCCCCSSSCCCB------CCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSSCCCCTTS
T ss_pred CceeEEEeeCCEeccchhhhhhhccCC------CCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCcchhhHHH
Confidence 445566666655555555444 3333 56666666666554333 22345666666666666666555566
Q ss_pred ccCCCCCCEEeCcCCcCCccc--CCCchhhhcCCCCCCEEEccCccCcccc--chHHHhcCCCCCEEEccCCcCcccCCC
Q 037325 387 IGNLTLLKELYLASNQMNGQK--ISDSYQHLKNQTELRTLVLNKARISDTI--SDWFWQLSLTLDELDVAYNELRGRVPN 462 (598)
Q Consensus 387 l~~l~~L~~L~l~~n~l~~~~--~~~~~~~l~~~~~L~~L~l~~n~l~~~~--~~~~~~~~~~L~~L~ls~n~~~~~~p~ 462 (598)
+..+++|++|++++|++.+.. .+. ..+..+++|++|++++|+++... +..+...+++|++|++++|++++..|.
T Consensus 165 ~~~l~~L~~L~Ls~N~l~~~~~~~~~--~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~~l~~L~~L~Ls~N~l~~~~p~ 242 (310)
T 4glp_A 165 VRAFPALTSLDLSDNPGLGERGLMAA--LCPHKFPAIQNLALRNTGMETPTGVCAALAAAGVQPHSLDLSHNSLRATVNP 242 (310)
T ss_dssp CCCCTTCCEEECCSCTTCHHHHHHTT--SCTTSSCCCCSCBCCSSCCCCHHHHHHHHHHHTCCCSSEECTTSCCCCCCCS
T ss_pred hccCCCCCEEECCCCCCccchhhhHH--HhhhcCCCCCEEECCCCCCCchHHHHHHHHhcCCCCCEEECCCCCCCccchh
Confidence 666666666666666654421 010 11245566666666666665221 112222345556666555555544343
Q ss_pred CcccCCCCEEEcccCcCcccCCCCCcCCcEEEccCCcccccCCchhhcccCCCCCccccCCCCeEeCcCCccccccchhc
Q 037325 463 SLGFNFPAKVDLSFNNFEGRLLLWSFNVTKLYLRDNSFSGLIPNDIGQNLPFLTDLGNLKQLITLVISNNNLSGEIPLLF 542 (598)
Q Consensus 463 ~~~~~~L~~l~ls~n~l~~~~~~~~~~L~~L~ls~n~l~~~~p~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~ 542 (598)
. +.. +..+++|++|+|++|+++ .+|..+
T Consensus 243 ~--------------------------------------------~~~-------~~~~~~L~~L~Ls~N~l~-~lp~~~ 270 (310)
T 4glp_A 243 S--------------------------------------------APR-------CMWSSALNSLNLSFAGLE-QVPKGL 270 (310)
T ss_dssp C--------------------------------------------CSS-------CCCCTTCCCEECCSSCCC-SCCSCC
T ss_pred h--------------------------------------------HHh-------ccCcCcCCEEECCCCCCC-chhhhh
Confidence 2 222 001246666666666666 555555
Q ss_pred cCCCCCCEEECCCCcCccccchhccCCCCCCEEEccCCCCcc
Q 037325 543 SNISFLYILDMSNNSLSGSTPESIGSLRTVKFLVLRNNYLSG 584 (598)
Q Consensus 543 ~~l~~L~~L~ls~N~l~~~~p~~l~~l~~L~~L~l~~n~l~g 584 (598)
. ++|++|++++|++++ +|. +..+++|+.|++++|+++.
T Consensus 271 ~--~~L~~L~Ls~N~l~~-~~~-~~~l~~L~~L~L~~N~l~~ 308 (310)
T 4glp_A 271 P--AKLRVLDLSSNRLNR-APQ-PDELPEVDNLTLDGNPFLV 308 (310)
T ss_dssp C--SCCSCEECCSCCCCS-CCC-TTSCCCCSCEECSSTTTSC
T ss_pred c--CCCCEEECCCCcCCC-Cch-hhhCCCccEEECcCCCCCC
Confidence 3 566666666666664 233 4556666677777776653
|
| >4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.87 E-value=1.5e-21 Score=192.77 Aligned_cols=206 Identities=18% Similarity=0.183 Sum_probs=151.0
Q ss_pred cCCCCCEEEcCCCCCCCCCCCCCc-CCCCCccEEEccCCCCCCCcc----hhhhcCCCCCEEEccCCcccccCCccccCC
Q 037325 213 KLHSFVELHLPNCNLPSLPLSFPS-LNFASLQVLDLSNNDFNSTTP----HWLFNITSLLCLDLGSNDLQGDIPDGFASL 287 (598)
Q Consensus 213 ~l~~L~~L~l~~~~l~~~~~~~~~-~~l~~L~~L~L~~n~l~~~~~----~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l 287 (598)
.+++|++|++++|.+++..+...+ ..+++|++|++++|.+++..+ ..+..+++|++|++++|.+.+..+..+..+
T Consensus 89 ~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l 168 (310)
T 4glp_A 89 AYSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHSPAFSCEQVRAF 168 (310)
T ss_dssp HHSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSSCCCCTTSCCCC
T ss_pred ccCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCcchhhHHHhccC
Confidence 456688888888888776663332 778899999999999887554 344578899999999999987777888899
Q ss_pred CCccEEECcCCCcCcc-cc--chhhcCCCCCCEEecccccCCcccch---hhhCCCCCCCCCCccEEEccCccccccCcc
Q 037325 288 NSLQELDLSGNSFLGG-QL--SRNLGKLCNLRTMILSRNNISSEVSD---FLDGLSECTNSILLEKLELRFNQFTGILPI 361 (598)
Q Consensus 288 ~~L~~L~l~~n~~~~~-~~--~~~l~~l~~L~~L~l~~n~l~~~~~~---~~~~l~~~~~~~~L~~L~Ls~n~l~~~~~~ 361 (598)
++|++|++++|++.+. .+ +..+..+++|++|++++|+++..... .+..++ +|++|++++|.+++..|.
T Consensus 169 ~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~~l~------~L~~L~Ls~N~l~~~~p~ 242 (310)
T 4glp_A 169 PALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMETPTGVCAALAAAGV------QPHSLDLSHNSLRATVNP 242 (310)
T ss_dssp TTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCHHHHHHHHHHHTC------CCSSEECTTSCCCCCCCS
T ss_pred CCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCchHHHHHHHHhcCC------CCCEEECCCCCCCccchh
Confidence 9999999999984321 12 23346788899999999988643221 234555 788888888888877676
Q ss_pred ccCCC---CCCCEEEccCCcCCccchhhccCCCCCCEEeCcCCcCCcccCCCchhhhcCCCCCCEEEccCccCcc
Q 037325 362 SLGSL---KNLRHLVLWQNSFLGSIPPSIGNLTLLKELYLASNQMNGQKISDSYQHLKNQTELRTLVLNKARISD 433 (598)
Q Consensus 362 ~l~~l---~~L~~L~ls~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~~~~L~~L~l~~n~l~~ 433 (598)
.+..+ ++|++|++++|+++ .+|..+. ++|++|++++|++++.. . +..+++|+.|++++|++++
T Consensus 243 ~~~~~~~~~~L~~L~Ls~N~l~-~lp~~~~--~~L~~L~Ls~N~l~~~~--~----~~~l~~L~~L~L~~N~l~~ 308 (310)
T 4glp_A 243 SAPRCMWSSALNSLNLSFAGLE-QVPKGLP--AKLRVLDLSSNRLNRAP--Q----PDELPEVDNLTLDGNPFLV 308 (310)
T ss_dssp CCSSCCCCTTCCCEECCSSCCC-SCCSCCC--SCCSCEECCSCCCCSCC--C----TTSCCCCSCEECSSTTTSC
T ss_pred hHHhccCcCcCCEEECCCCCCC-chhhhhc--CCCCEEECCCCcCCCCc--h----hhhCCCccEEECcCCCCCC
Confidence 66665 58888888888888 5666553 68888888888887642 1 3455677777777777654
|
| >1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A | Back alignment and structure |
|---|
Probab=99.86 E-value=1.6e-20 Score=182.92 Aligned_cols=203 Identities=25% Similarity=0.206 Sum_probs=150.7
Q ss_pred hhcCCCCCEEEcCCCCCCCCCCCCCcCCCCCccEEEccCCCCCCCcchhhhcCCCCCEEEccCCcccccCCccccCCCCc
Q 037325 211 FNKLHSFVELHLPNCNLPSLPLSFPSLNFASLQVLDLSNNDFNSTTPHWLFNITSLLCLDLGSNDLQGDIPDGFASLNSL 290 (598)
Q Consensus 211 ~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L 290 (598)
+.+++++++++++++.++.++... .+++++|++++|.+++..+..+..+++|+.|++++|.+++. +. ...+++|
T Consensus 6 ~~~l~~l~~l~~~~~~l~~ip~~~----~~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~-~~-~~~l~~L 79 (290)
T 1p9a_G 6 VSKVASHLEVNCDKRNLTALPPDL----PKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKL-QV-DGTLPVL 79 (290)
T ss_dssp EECSTTCCEEECTTSCCSSCCSCC----CTTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEE-EC-CSCCTTC
T ss_pred ccccCCccEEECCCCCCCcCCCCC----CCCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcc-cC-CCCCCcC
Confidence 445666777777777777665422 26788888888888877777888888888888888888753 32 2677888
Q ss_pred cEEECcCCCcCccccchhhcCCCCCCEEecccccCCcccchhhhCCCCCCCCCCccEEEccCccccccCccccCCCCCCC
Q 037325 291 QELDLSGNSFLGGQLSRNLGKLCNLRTMILSRNNISSEVSDFLDGLSECTNSILLEKLELRFNQFTGILPISLGSLKNLR 370 (598)
Q Consensus 291 ~~L~l~~n~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~l~~L~ 370 (598)
++|++++|.+ ..+|..+..+++|++|++++|++++..+..|..++ +|++|++++|++++..+..+..+++|+
T Consensus 80 ~~L~Ls~N~l--~~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~------~L~~L~L~~N~l~~~~~~~~~~l~~L~ 151 (290)
T 1p9a_G 80 GTLDLSHNQL--QSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLG------ELQELYLKGNELKTLPPGLLTPTPKLE 151 (290)
T ss_dssp CEEECCSSCC--SSCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCT------TCCEEECTTSCCCCCCTTTTTTCTTCC
T ss_pred CEEECCCCcC--CcCchhhccCCCCCEEECCCCcCcccCHHHHcCCC------CCCEEECCCCCCCccChhhcccccCCC
Confidence 8888888884 35677777888888888888888877777777776 788888888888866666677788888
Q ss_pred EEEccCCcCCccchhhccCCCCCCEEeCcCCcCCcccCCCchhhhcCCCCCCEEEccCccCc
Q 037325 371 HLVLWQNSFLGSIPPSIGNLTLLKELYLASNQMNGQKISDSYQHLKNQTELRTLVLNKARIS 432 (598)
Q Consensus 371 ~L~ls~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~~~~L~~L~l~~n~l~ 432 (598)
.|++++|++++..+..+..+++|++|++++|+++.. |. .+...+.|+.+++++|.+.
T Consensus 152 ~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~i--p~---~~~~~~~L~~l~L~~Np~~ 208 (290)
T 1p9a_G 152 KLSLANNNLTELPAGLLNGLENLDTLLLQENSLYTI--PK---GFFGSHLLPFAFLHGNPWL 208 (290)
T ss_dssp EEECTTSCCSCCCTTTTTTCTTCCEEECCSSCCCCC--CT---TTTTTCCCSEEECCSCCBC
T ss_pred EEECCCCcCCccCHHHhcCcCCCCEEECCCCcCCcc--Ch---hhcccccCCeEEeCCCCcc
Confidence 888888888755555567788888888888888744 32 2445567778888877765
|
| >3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A | Back alignment and structure |
|---|
Probab=99.86 E-value=6.5e-21 Score=182.05 Aligned_cols=190 Identities=27% Similarity=0.347 Sum_probs=127.7
Q ss_pred CCCCCcccEEecCCCCcEEEEEcCCCCCCCCCCcccCCCCCcceecCccccCCCCCCEEeCCCCCCCCCCcchhccCCCC
Q 037325 60 EDCCSWSGVSCNNRTASVIKLNLNNPFRDSFGSFEDDAGHELGGEISPSLLQLKDLEYLDLSMNNFTGFQVPEFIGSLKE 139 (598)
Q Consensus 60 ~~~c~w~gv~c~~~~~~v~~L~L~~~~~~~~~~~~~~~~~~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~p~~~~~l~~ 139 (598)
.+||.|.|++|.. ..+.+++++ +++. .+|..+. +++++|+|++|.+.+. .+..+.++++
T Consensus 2 ~~Cp~~~gC~C~~---~~~~l~~~~--------------~~l~-~~p~~~~--~~l~~L~L~~n~l~~~-~~~~~~~l~~ 60 (251)
T 3m19_A 2 KTCETVTGCTCNE---GKKEVDCQG--------------KSLD-SVPSGIP--ADTEKLDLQSTGLATL-SDATFRGLTK 60 (251)
T ss_dssp --CHHHHSSEEEG---GGTEEECTT--------------CCCS-SCCSCCC--TTCCEEECTTSCCCCC-CTTTTTTCTT
T ss_pred ccCCCCCceEcCC---CCeEEecCC--------------CCcc-ccCCCCC--CCCCEEEccCCCcCcc-CHhHhcCccc
Confidence 3688999999953 233577776 4554 4555444 6899999999999876 6677889999
Q ss_pred CCEEECcCCCCCcccchhccCCCCCCEEEccCCCCCCCccChhhhcCCCCCcEEEcCCCCCCCCcccchHhhhcCCCCCE
Q 037325 140 LRYLNLSGSFFSGTIPQTLGNLSNLLYLDLNNFLDQSNQIDLEWLSGLSSLVYFNLGGADLSKAGAYWLEVFNKLHSFVE 219 (598)
Q Consensus 140 L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~l~~L~~ 219 (598)
|++|++++|.+++..|..+..+++|++|++++|.+.... +..+..+++|++
T Consensus 61 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~-----------------------------~~~~~~l~~L~~ 111 (251)
T 3m19_A 61 LTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLASLP-----------------------------LGVFDHLTQLDK 111 (251)
T ss_dssp CCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCC-----------------------------TTTTTTCTTCCE
T ss_pred CCEEECCCCcCCccCHhHhccCCcCCEEECCCCcccccC-----------------------------hhHhcccCCCCE
Confidence 999999999998777777788888888888776554222 233444455555
Q ss_pred EEcCCCCCCCCCCCCCcCCCCCccEEEccCCCCCCCcchhhhcCCCCCEEEccCCcccccCCccccCCCCccEEECcCCC
Q 037325 220 LHLPNCNLPSLPLSFPSLNFASLQVLDLSNNDFNSTTPHWLFNITSLLCLDLGSNDLQGDIPDGFASLNSLQELDLSGNS 299 (598)
Q Consensus 220 L~l~~~~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~ 299 (598)
|++++|.++++++ ..+..+++|++|++++|++++..+..+..+++|++|++++|.+++..+..+..+++|+.|++++|+
T Consensus 112 L~L~~N~l~~~~~-~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~ 190 (251)
T 3m19_A 112 LYLGGNQLKSLPS-GVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQ 190 (251)
T ss_dssp EECCSSCCCCCCT-TTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCC
T ss_pred EEcCCCcCCCcCh-hHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCc
Confidence 5555555554444 334556666666666666665555556666677777777777665555566667777777777776
Q ss_pred c
Q 037325 300 F 300 (598)
Q Consensus 300 ~ 300 (598)
+
T Consensus 191 ~ 191 (251)
T 3m19_A 191 F 191 (251)
T ss_dssp B
T ss_pred e
Confidence 3
|
| >1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 | Back alignment and structure |
|---|
Probab=99.85 E-value=2.9e-20 Score=183.04 Aligned_cols=193 Identities=22% Similarity=0.283 Sum_probs=108.0
Q ss_pred ccCCCCCCEEeCCCCCCCCCCcchhccCCCCCCEEECcCCCCCcccchhccCCCCCCEEEccCCCCCCCccChhhhcCCC
Q 037325 109 LLQLKDLEYLDLSMNNFTGFQVPEFIGSLKELRYLNLSGSFFSGTIPQTLGNLSNLLYLDLNNFLDQSNQIDLEWLSGLS 188 (598)
Q Consensus 109 l~~l~~L~~L~Ls~n~l~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~~l~ 188 (598)
..++++|++|++++|.+.. ++ .+..+++|++|++++|.+++ ++. +..+++|++|++++|.+.... .+..++
T Consensus 37 ~~~l~~L~~L~l~~~~i~~--l~-~~~~l~~L~~L~L~~n~i~~-~~~-~~~l~~L~~L~L~~n~l~~~~----~~~~l~ 107 (308)
T 1h6u_A 37 QADLDGITTLSAFGTGVTT--IE-GVQYLNNLIGLELKDNQITD-LAP-LKNLTKITELELSGNPLKNVS----AIAGLQ 107 (308)
T ss_dssp HHHHHTCCEEECTTSCCCC--CT-TGGGCTTCCEEECCSSCCCC-CGG-GTTCCSCCEEECCSCCCSCCG----GGTTCT
T ss_pred HHHcCCcCEEEeeCCCccC--ch-hhhccCCCCEEEccCCcCCC-Chh-HccCCCCCEEEccCCcCCCch----hhcCCC
Confidence 4457788888888888773 44 46778888888888888874 444 777888888888777654332 356666
Q ss_pred CCcEEEcCCCCCCCCcccchHhhhcCCCCCEEEcCCCCCCCCCCCCCcCCCCCccEEEccCCCCCCCcchhhhcCCCCCE
Q 037325 189 SLVYFNLGGADLSKAGAYWLEVFNKLHSFVELHLPNCNLPSLPLSFPSLNFASLQVLDLSNNDFNSTTPHWLFNITSLLC 268 (598)
Q Consensus 189 ~L~~L~l~~n~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~ 268 (598)
+|++|++++|.+.+.. .+..+++|++|++++|.+++.++ +..+++|++|++++|.+++..+ +..+++|+.
T Consensus 108 ~L~~L~l~~n~l~~~~-----~l~~l~~L~~L~l~~n~l~~~~~---l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~ 177 (308)
T 1h6u_A 108 SIKTLDLTSTQITDVT-----PLAGLSNLQVLYLDLNQITNISP---LAGLTNLQYLSIGNAQVSDLTP--LANLSKLTT 177 (308)
T ss_dssp TCCEEECTTSCCCCCG-----GGTTCTTCCEEECCSSCCCCCGG---GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCE
T ss_pred CCCEEECCCCCCCCch-----hhcCCCCCCEEECCCCccCcCcc---ccCCCCccEEEccCCcCCCChh--hcCCCCCCE
Confidence 6666666666665542 24555555555555555554432 3344555555555555543222 444455555
Q ss_pred EEccCCcccccCCccccCCCCccEEECcCCCcCccccchhhcCCCCCCEEecccccC
Q 037325 269 LDLGSNDLQGDIPDGFASLNSLQELDLSGNSFLGGQLSRNLGKLCNLRTMILSRNNI 325 (598)
Q Consensus 269 L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~l~~l~~L~~L~l~~n~l 325 (598)
|++++|.+++..+ +..+++|++|++++|.+ .+.. .+..+++|+.|++++|.+
T Consensus 178 L~l~~n~l~~~~~--l~~l~~L~~L~L~~N~l-~~~~--~l~~l~~L~~L~l~~N~i 229 (308)
T 1h6u_A 178 LKADDNKISDISP--LASLPNLIEVHLKNNQI-SDVS--PLANTSNLFIVTLTNQTI 229 (308)
T ss_dssp EECCSSCCCCCGG--GGGCTTCCEEECTTSCC-CBCG--GGTTCTTCCEEEEEEEEE
T ss_pred EECCCCccCcChh--hcCCCCCCEEEccCCcc-Cccc--cccCCCCCCEEEccCCee
Confidence 5555554442211 34444444444444442 2211 134444444444444443
|
| >2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* | Back alignment and structure |
|---|
Probab=99.84 E-value=9.8e-21 Score=179.47 Aligned_cols=196 Identities=21% Similarity=0.234 Sum_probs=128.6
Q ss_pred CCCEEeCCCCCCCCCCcchhccCCCCCCEEECcCCC-CCcccchhccCCCCCCEEEccC-CCCCCCccChhhhcCCCCCc
Q 037325 114 DLEYLDLSMNNFTGFQVPEFIGSLKELRYLNLSGSF-FSGTIPQTLGNLSNLLYLDLNN-FLDQSNQIDLEWLSGLSSLV 191 (598)
Q Consensus 114 ~L~~L~Ls~n~l~~~~~p~~~~~l~~L~~L~L~~n~-l~~~~p~~l~~l~~L~~L~L~~-n~~~~~~~~~~~~~~l~~L~ 191 (598)
+|++|++++|++++. .+..+.++++|++|++++|+ +++..+..|.++++|++|++++ |.+.. .....+.++++|+
T Consensus 32 ~l~~L~l~~n~l~~i-~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~--i~~~~f~~l~~L~ 108 (239)
T 2xwt_C 32 STQTLKLIETHLRTI-PSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTY--IDPDALKELPLLK 108 (239)
T ss_dssp TCCEEEEESCCCSEE-CTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCE--ECTTSEECCTTCC
T ss_pred cccEEEEeCCcceEE-CHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeE--cCHHHhCCCCCCC
Confidence 677777777777743 33456677777777777775 6644444667777777777776 55432 2223466677777
Q ss_pred EEEcCCCCCCCCcccchHhhhcCCCCC---EEEcCCC-CCCCCCCCCCcCCCCCcc-EEEccCCCCCCCcchhhhcCCCC
Q 037325 192 YFNLGGADLSKAGAYWLEVFNKLHSFV---ELHLPNC-NLPSLPLSFPSLNFASLQ-VLDLSNNDFNSTTPHWLFNITSL 266 (598)
Q Consensus 192 ~L~l~~n~~~~~~~~~~~~~~~l~~L~---~L~l~~~-~l~~~~~~~~~~~l~~L~-~L~L~~n~l~~~~~~~l~~l~~L 266 (598)
+|++++|.+.... . +..+++|+ +|++++| .++.++. ..+..+++|+ +|++++|+++ .+|......++|
T Consensus 109 ~L~l~~n~l~~lp----~-~~~l~~L~~L~~L~l~~N~~l~~i~~-~~~~~l~~L~~~L~l~~n~l~-~i~~~~~~~~~L 181 (239)
T 2xwt_C 109 FLGIFNTGLKMFP----D-LTKVYSTDIFFILEITDNPYMTSIPV-NAFQGLCNETLTLKLYNNGFT-SVQGYAFNGTKL 181 (239)
T ss_dssp EEEEEEECCCSCC----C-CTTCCBCCSEEEEEEESCTTCCEECT-TTTTTTBSSEEEEECCSCCCC-EECTTTTTTCEE
T ss_pred EEeCCCCCCcccc----c-cccccccccccEEECCCCcchhhcCc-ccccchhcceeEEEcCCCCCc-ccCHhhcCCCCC
Confidence 7777777776642 2 55666666 7777777 7777665 4566777788 8888888777 344333333778
Q ss_pred CEEEccCCc-ccccCCccccCC-CCccEEECcCCCcCccccchhhcCCCCCCEEecccc
Q 037325 267 LCLDLGSND-LQGDIPDGFASL-NSLQELDLSGNSFLGGQLSRNLGKLCNLRTMILSRN 323 (598)
Q Consensus 267 ~~L~l~~n~-l~~~~~~~l~~l-~~L~~L~l~~n~~~~~~~~~~l~~l~~L~~L~l~~n 323 (598)
+.|++++|+ +++..+..+..+ ++|++|++++|++ . .+|.. .+++|+.|+++++
T Consensus 182 ~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~N~l-~-~l~~~--~~~~L~~L~l~~~ 236 (239)
T 2xwt_C 182 DAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSV-T-ALPSK--GLEHLKELIARNT 236 (239)
T ss_dssp EEEECTTCTTCCEECTTTTTTCSBCCSEEECTTCCC-C-CCCCT--TCTTCSEEECTTC
T ss_pred CEEEcCCCCCcccCCHHHhhccccCCcEEECCCCcc-c-cCChh--HhccCceeeccCc
Confidence 888888884 775555667777 7888888888873 3 33433 5667788877665
|
| >3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A | Back alignment and structure |
|---|
Probab=99.83 E-value=2e-19 Score=171.73 Aligned_cols=180 Identities=27% Similarity=0.308 Sum_probs=122.9
Q ss_pred CCCEEEcCCCCCCCCCCCCCcCCCCCccEEEccCCCCCCCcchhhhcCCCCCEEEccCCcccccCCccccCCCCccEEEC
Q 037325 216 SFVELHLPNCNLPSLPLSFPSLNFASLQVLDLSNNDFNSTTPHWLFNITSLLCLDLGSNDLQGDIPDGFASLNSLQELDL 295 (598)
Q Consensus 216 ~L~~L~l~~~~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l 295 (598)
..++++++++.++.++.... ++++.|++++|.+++..+..+.++++|++|++++|.+++..+..+..+++|++|++
T Consensus 15 ~~~~l~~~~~~l~~~p~~~~----~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 90 (251)
T 3m19_A 15 GKKEVDCQGKSLDSVPSGIP----ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGL 90 (251)
T ss_dssp GGTEEECTTCCCSSCCSCCC----TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCeEEecCCCCccccCCCCC----CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEEC
Confidence 45667777777776664221 57778888888877777777777778888888887777666666777777777777
Q ss_pred cCCCcCccccchhhcCCCCCCEEecccccCCcccchhhhCCCCCCCCCCccEEEccCccccccCccccCCCCCCCEEEcc
Q 037325 296 SGNSFLGGQLSRNLGKLCNLRTMILSRNNISSEVSDFLDGLSECTNSILLEKLELRFNQFTGILPISLGSLKNLRHLVLW 375 (598)
Q Consensus 296 ~~n~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~ls 375 (598)
++|. +....+..+..+++|++|++++|++++..+..+..++ +|++|++++|.+++..+..+..+++|++|+++
T Consensus 91 ~~n~-l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~------~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~ 163 (251)
T 3m19_A 91 ANNQ-LASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLT------KLKELRLNTNQLQSIPAGAFDKLTNLQTLSLS 163 (251)
T ss_dssp TTSC-CCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCT------TCCEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred CCCc-ccccChhHhcccCCCCEEEcCCCcCCCcChhHhccCC------cccEEECcCCcCCccCHHHcCcCcCCCEEECC
Confidence 7777 4555555666777777777777777665555555555 67777777777765555556666777777777
Q ss_pred CCcCCccchhhccCCCCCCEEeCcCCcCCcc
Q 037325 376 QNSFLGSIPPSIGNLTLLKELYLASNQMNGQ 406 (598)
Q Consensus 376 ~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~ 406 (598)
+|++.+..+..+..+++|+.|++++|++.+.
T Consensus 164 ~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~ 194 (251)
T 3m19_A 164 TNQLQSVPHGAFDRLGKLQTITLFGNQFDCS 194 (251)
T ss_dssp SSCCSCCCTTTTTTCTTCCEEECCSCCBCTT
T ss_pred CCcCCccCHHHHhCCCCCCEEEeeCCceeCC
Confidence 7776655555566666677777766666544
|
| >1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 | Back alignment and structure |
|---|
Probab=99.83 E-value=1.8e-19 Score=177.42 Aligned_cols=208 Identities=25% Similarity=0.304 Sum_probs=116.5
Q ss_pred EEeCCCCCCCCCCcchhccCCCCCCEEECcCCCCCcccchhccCCCCCCEEEccCCCCCCCccChhhhcCCCCCcEEEcC
Q 037325 117 YLDLSMNNFTGFQVPEFIGSLKELRYLNLSGSFFSGTIPQTLGNLSNLLYLDLNNFLDQSNQIDLEWLSGLSSLVYFNLG 196 (598)
Q Consensus 117 ~L~Ls~n~l~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~~l~~L~~L~l~ 196 (598)
.+.+..+.+.+. + ....+++|++|++++|.++ .+| .+..+++|++|++++|.+..... +..+++|++|+++
T Consensus 23 ~~~l~~~~~~~~-~--~~~~l~~L~~L~l~~~~i~-~l~-~~~~l~~L~~L~L~~n~i~~~~~----~~~l~~L~~L~L~ 93 (308)
T 1h6u_A 23 KIAAGKSNVTDT-V--TQADLDGITTLSAFGTGVT-TIE-GVQYLNNLIGLELKDNQITDLAP----LKNLTKITELELS 93 (308)
T ss_dssp HHHTTCSSTTSE-E--CHHHHHTCCEEECTTSCCC-CCT-TGGGCTTCCEEECCSSCCCCCGG----GTTCCSCCEEECC
T ss_pred HHHhCCCCcCce-e--cHHHcCCcCEEEeeCCCcc-Cch-hhhccCCCCEEEccCCcCCCChh----HccCCCCCEEEcc
Confidence 344555555532 1 2345788999999999887 455 57778888888888876543322 5666667777777
Q ss_pred CCCCCCCcccchHhhhcCCCCCEEEcCCCCCCCCCCCCCcCCCCCccEEEccCCCCCCCcchhhhcCCCCCEEEccCCcc
Q 037325 197 GADLSKAGAYWLEVFNKLHSFVELHLPNCNLPSLPLSFPSLNFASLQVLDLSNNDFNSTTPHWLFNITSLLCLDLGSNDL 276 (598)
Q Consensus 197 ~n~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l 276 (598)
+|.+.+. ..+..+++|++|++++|.+++.+. +..+++|++|++++|.+++..+ +..+++|+.|++++|.+
T Consensus 94 ~n~l~~~-----~~~~~l~~L~~L~l~~n~l~~~~~---l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~l 163 (308)
T 1h6u_A 94 GNPLKNV-----SAIAGLQSIKTLDLTSTQITDVTP---LAGLSNLQVLYLDLNQITNISP--LAGLTNLQYLSIGNAQV 163 (308)
T ss_dssp SCCCSCC-----GGGTTCTTCCEEECTTSCCCCCGG---GTTCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCC
T ss_pred CCcCCCc-----hhhcCCCCCCEEECCCCCCCCchh---hcCCCCCCEEECCCCccCcCcc--ccCCCCccEEEccCCcC
Confidence 6666554 235555556666665555555432 4445555555555555544322 44445555555555544
Q ss_pred cccCCccccCCCCccEEECcCCCcCccccchhhcCCCCCCEEecccccCCcccchhhhCCCCCCCCCCccEEEccCcccc
Q 037325 277 QGDIPDGFASLNSLQELDLSGNSFLGGQLSRNLGKLCNLRTMILSRNNISSEVSDFLDGLSECTNSILLEKLELRFNQFT 356 (598)
Q Consensus 277 ~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~~~~~~~L~~L~Ls~n~l~ 356 (598)
++. +. +..+++|++|++++|.+++..+ +..++ +|++|++++|.++
T Consensus 164 ~~~-~~--------------------------l~~l~~L~~L~l~~n~l~~~~~--l~~l~------~L~~L~L~~N~l~ 208 (308)
T 1h6u_A 164 SDL-TP--------------------------LANLSKLTTLKADDNKISDISP--LASLP------NLIEVHLKNNQIS 208 (308)
T ss_dssp CCC-GG--------------------------GTTCTTCCEEECCSSCCCCCGG--GGGCT------TCCEEECTTSCCC
T ss_pred CCC-hh--------------------------hcCCCCCCEEECCCCccCcChh--hcCCC------CCCEEEccCCccC
Confidence 422 21 4444455555555554443322 33333 5556666666555
Q ss_pred ccCccccCCCCCCCEEEccCCcCC
Q 037325 357 GILPISLGSLKNLRHLVLWQNSFL 380 (598)
Q Consensus 357 ~~~~~~l~~l~~L~~L~ls~n~l~ 380 (598)
+.. .+..+++|+.|++++|+++
T Consensus 209 ~~~--~l~~l~~L~~L~l~~N~i~ 230 (308)
T 1h6u_A 209 DVS--PLANTSNLFIVTLTNQTIT 230 (308)
T ss_dssp BCG--GGTTCTTCCEEEEEEEEEE
T ss_pred ccc--cccCCCCCCEEEccCCeee
Confidence 433 2555666666666666554
|
| >3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} | Back alignment and structure |
|---|
Probab=99.82 E-value=4e-20 Score=195.29 Aligned_cols=195 Identities=18% Similarity=0.220 Sum_probs=148.7
Q ss_pred CccEEEccCccccccCccccCCCCCCCEEEccCCcCCccchhhccCCCCCCEEeCcCCcCCcccCCCchhhhcCCCCCCE
Q 037325 344 LLEKLELRFNQFTGILPISLGSLKNLRHLVLWQNSFLGSIPPSIGNLTLLKELYLASNQMNGQKISDSYQHLKNQTELRT 423 (598)
Q Consensus 344 ~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~ls~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~~~~L~~ 423 (598)
+++.|++++|.+++ +|..+ +++|++|++++|+++ .+| ..+++|++|++++|.+++. |. +.. +|+.
T Consensus 60 ~L~~L~Ls~n~L~~-lp~~l--~~~L~~L~Ls~N~l~-~ip---~~l~~L~~L~Ls~N~l~~i--p~----l~~--~L~~ 124 (571)
T 3cvr_A 60 QFSELQLNRLNLSS-LPDNL--PPQITVLEITQNALI-SLP---ELPASLEYLDACDNRLSTL--PE----LPA--SLKH 124 (571)
T ss_dssp TCSEEECCSSCCSC-CCSCC--CTTCSEEECCSSCCS-CCC---CCCTTCCEEECCSSCCSCC--CC----CCT--TCCE
T ss_pred CccEEEeCCCCCCc-cCHhH--cCCCCEEECcCCCCc-ccc---cccCCCCEEEccCCCCCCc--ch----hhc--CCCE
Confidence 69999999999986 66655 378999999999998 666 4578999999999999873 43 222 8999
Q ss_pred EEccCccCccccchHHHhcCCCCCEEEccCCcCcccCCCCcccCCCCEEEcccCcCcccCCCCCcCCcEEEccCCccccc
Q 037325 424 LVLNKARISDTISDWFWQLSLTLDELDVAYNELRGRVPNSLGFNFPAKVDLSFNNFEGRLLLWSFNVTKLYLRDNSFSGL 503 (598)
Q Consensus 424 L~l~~n~l~~~~~~~~~~~~~~L~~L~ls~n~~~~~~p~~~~~~~L~~l~ls~n~l~~~~~~~~~~L~~L~ls~n~l~~~ 503 (598)
|++++|++++ +|. .+++|++|++++|++++ +|. ....|+.|++++|++++ +|...++|+.|++++|+|+ .
T Consensus 125 L~Ls~N~l~~-lp~----~l~~L~~L~Ls~N~l~~-lp~--~l~~L~~L~Ls~N~L~~-lp~l~~~L~~L~Ls~N~L~-~ 194 (571)
T 3cvr_A 125 LDVDNNQLTM-LPE----LPALLEYINADNNQLTM-LPE--LPTSLEVLSVRNNQLTF-LPELPESLEALDVSTNLLE-S 194 (571)
T ss_dssp EECCSSCCSC-CCC----CCTTCCEEECCSSCCSC-CCC--CCTTCCEEECCSSCCSC-CCCCCTTCCEEECCSSCCS-S
T ss_pred EECCCCcCCC-CCC----cCccccEEeCCCCccCc-CCC--cCCCcCEEECCCCCCCC-cchhhCCCCEEECcCCCCC-c
Confidence 9999999988 444 37889999999999986 555 23378888888888887 4444478888888888888 6
Q ss_pred CCchhhcccCCCCCc-cccCCCCeEeCcCCccccccchhccCCCCCCEEECCCCcCccccchhccCCCC
Q 037325 504 IPNDIGQNLPFLTDL-GNLKQLITLVISNNNLSGEIPLLFSNISFLYILDMSNNSLSGSTPESIGSLRT 571 (598)
Q Consensus 504 ~p~~~~~~~~~~~~~-~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~l~~l~~ 571 (598)
+|. +.. .+ .....|+.|+|++|.|+ .+|..+.++++|+.|+|++|.+++.+|..+..+..
T Consensus 195 lp~-~~~------~L~~~~~~L~~L~Ls~N~l~-~lp~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~ 255 (571)
T 3cvr_A 195 LPA-VPV------RNHHSEETEIFFRCRENRIT-HIPENILSLDPTCTIILEDNPLSSRIRESLSQQTA 255 (571)
T ss_dssp CCC-CC--------------CCEEEECCSSCCC-CCCGGGGGSCTTEEEECCSSSCCHHHHHHHHHHHH
T ss_pred hhh-HHH------hhhcccccceEEecCCCcce-ecCHHHhcCCCCCEEEeeCCcCCCcCHHHHHHhhc
Confidence 665 421 00 11223388888888888 68888888888888888888888888888776543
|
| >2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* | Back alignment and structure |
|---|
Probab=99.82 E-value=8.4e-20 Score=173.04 Aligned_cols=112 Identities=20% Similarity=0.295 Sum_probs=46.8
Q ss_pred hhcCCCCCEEEcCCCC-CCCCCCCCCcCCCCCccEEEccC-CCCCCCcchhhhcCCCCCEEEccCCcccccCCccccCCC
Q 037325 211 FNKLHSFVELHLPNCN-LPSLPLSFPSLNFASLQVLDLSN-NDFNSTTPHWLFNITSLLCLDLGSNDLQGDIPDGFASLN 288 (598)
Q Consensus 211 ~~~l~~L~~L~l~~~~-l~~~~~~~~~~~l~~L~~L~L~~-n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~ 288 (598)
+..+++|++|++++|. ++.++. ..+..+++|++|++++ |++++..+..+.++++|++|++++|.+++ +|. +..++
T Consensus 51 ~~~l~~L~~L~l~~n~~l~~i~~-~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L~l~~n~l~~-lp~-~~~l~ 127 (239)
T 2xwt_C 51 FSNLPNISRIYVSIDVTLQQLES-HSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLGIFNTGLKM-FPD-LTKVY 127 (239)
T ss_dssp TTTCTTCCEEEEECCSSCCEECT-TTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEEEEEEECCCS-CCC-CTTCC
T ss_pred ccCCCCCcEEeCCCCCCcceeCH-hHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEEeCCCCCCcc-ccc-ccccc
Confidence 3334444444444443 333332 2333444444444444 44443333344444444444444444442 332 34444
Q ss_pred Ccc---EEECcCC-CcCccccchhhcCCCCCC-EEecccccCC
Q 037325 289 SLQ---ELDLSGN-SFLGGQLSRNLGKLCNLR-TMILSRNNIS 326 (598)
Q Consensus 289 ~L~---~L~l~~n-~~~~~~~~~~l~~l~~L~-~L~l~~n~l~ 326 (598)
+|+ +|++++| . +....+..+..+++|+ +|++++|++.
T Consensus 128 ~L~~L~~L~l~~N~~-l~~i~~~~~~~l~~L~~~L~l~~n~l~ 169 (239)
T 2xwt_C 128 STDIFFILEITDNPY-MTSIPVNAFQGLCNETLTLKLYNNGFT 169 (239)
T ss_dssp BCCSEEEEEEESCTT-CCEECTTTTTTTBSSEEEEECCSCCCC
T ss_pred ccccccEEECCCCcc-hhhcCcccccchhcceeEEEcCCCCCc
Confidence 444 4444444 3 2222223344444444 4444444443
|
| >2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri} | Back alignment and structure |
|---|
Probab=99.80 E-value=5.9e-19 Score=163.31 Aligned_cols=162 Identities=24% Similarity=0.255 Sum_probs=105.1
Q ss_pred CCCCCEEeCCCCCCCCCCcchhccCCCCCCEEECcCCCCCcccchhccCCCCCCEEEccCCCCCCCccChhhhcCCCCCc
Q 037325 112 LKDLEYLDLSMNNFTGFQVPEFIGSLKELRYLNLSGSFFSGTIPQTLGNLSNLLYLDLNNFLDQSNQIDLEWLSGLSSLV 191 (598)
Q Consensus 112 l~~L~~L~Ls~n~l~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~~l~~L~ 191 (598)
.++|++|++++|++++. .+..+..+++|++|++++|++++..+..|..+++|++|++++|.+.... ...+.++++|+
T Consensus 27 ~~~l~~L~l~~n~l~~~-~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~--~~~~~~l~~L~ 103 (208)
T 2o6s_A 27 PAQTTYLDLETNSLKSL-PNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSLP--NGVFDKLTQLK 103 (208)
T ss_dssp CTTCSEEECCSSCCCCC-CTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCC--TTTTTTCTTCC
T ss_pred CCCCcEEEcCCCccCcC-ChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCcCCccC--HhHhcCccCCC
Confidence 46899999999999864 5556788999999999999998555556778888888888887654322 23356666677
Q ss_pred EEEcCCCCCCCCcccchHhhhcCCCCCEEEcCCCCCCCCCCCCCcCCCCCccEEEccCCCCCCCcchhhhcCCCCCEEEc
Q 037325 192 YFNLGGADLSKAGAYWLEVFNKLHSFVELHLPNCNLPSLPLSFPSLNFASLQVLDLSNNDFNSTTPHWLFNITSLLCLDL 271 (598)
Q Consensus 192 ~L~l~~n~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l 271 (598)
+|++++|.+.... +..+..+++|++|++++|.+++++. ..+..+++|++|++++|.+.+ .+++|+.|++
T Consensus 104 ~L~L~~N~l~~~~---~~~~~~l~~L~~L~l~~N~l~~~~~-~~~~~l~~L~~L~l~~N~~~~-------~~~~l~~L~~ 172 (208)
T 2o6s_A 104 ELALNTNQLQSLP---DGVFDKLTQLKDLRLYQNQLKSVPD-GVFDRLTSLQYIWLHDNPWDC-------TCPGIRYLSE 172 (208)
T ss_dssp EEECCSSCCCCCC---TTTTTTCTTCCEEECCSSCCSCCCT-TTTTTCTTCCEEECCSCCBCC-------CTTTTHHHHH
T ss_pred EEEcCCCcCcccC---HhHhccCCcCCEEECCCCccceeCH-HHhccCCCccEEEecCCCeec-------CCCCHHHHHH
Confidence 7777666666553 3345556666666666666665544 334455566666666664432 2345555555
Q ss_pred cCCcccccCCccccCC
Q 037325 272 GSNDLQGDIPDGFASL 287 (598)
Q Consensus 272 ~~n~l~~~~~~~l~~l 287 (598)
..|.++|.+|..++.+
T Consensus 173 ~~n~~~g~ip~~~~~l 188 (208)
T 2o6s_A 173 WINKHSGVVRNSAGSV 188 (208)
T ss_dssp HHHHCTTTBBCTTSSB
T ss_pred HHHhCCceeeccCccc
Confidence 5555555555555443
|
| >4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* | Back alignment and structure |
|---|
Probab=99.80 E-value=3.4e-19 Score=178.94 Aligned_cols=192 Identities=19% Similarity=0.239 Sum_probs=104.4
Q ss_pred ecCccccCCCCCCEEeCCCCCCCCCCcc-hhccCCCCCCEEECcCCCCCcccch-hccCCCCCCEEEccCCCCCCCccCh
Q 037325 104 EISPSLLQLKDLEYLDLSMNNFTGFQVP-EFIGSLKELRYLNLSGSFFSGTIPQ-TLGNLSNLLYLDLNNFLDQSNQIDL 181 (598)
Q Consensus 104 ~~~~~l~~l~~L~~L~Ls~n~l~~~~~p-~~~~~l~~L~~L~L~~n~l~~~~p~-~l~~l~~L~~L~L~~n~~~~~~~~~ 181 (598)
.+|..+ .+++++|+|++|+++. +| ..|.++++|++|+|++|++.+.+|. .|.++++++++...
T Consensus 23 ~iP~~l--~~~l~~L~Ls~N~i~~--i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~----------- 87 (350)
T 4ay9_X 23 EIPSDL--PRNAIELRFVLTKLRV--IQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIE----------- 87 (350)
T ss_dssp SCCTTC--CTTCSEEEEESCCCSE--ECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEE-----------
T ss_pred ccCcCc--CCCCCEEEccCCcCCC--cCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcc-----------
Confidence 345544 3678899999999884 55 4678889999999999988766654 45666666553322
Q ss_pred hhhcCCCCCcEEEcCCCCCCCCcccchHhhhcCCCCCEEEcCCCCCCCCCCCCCcCCCCCccEEEccCC-CCCCCcchhh
Q 037325 182 EWLSGLSSLVYFNLGGADLSKAGAYWLEVFNKLHSFVELHLPNCNLPSLPLSFPSLNFASLQVLDLSNN-DFNSTTPHWL 260 (598)
Q Consensus 182 ~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~l 260 (598)
+.|++.... ++.|..+++|++|++++|.++..+. ..+....++..+++.++ ++....+..+
T Consensus 88 --------------~~N~l~~l~---~~~f~~l~~L~~L~l~~n~l~~~~~-~~~~~~~~l~~l~l~~~~~i~~l~~~~f 149 (350)
T 4ay9_X 88 --------------KANNLLYIN---PEAFQNLPNLQYLLISNTGIKHLPD-VHKIHSLQKVLLDIQDNINIHTIERNSF 149 (350)
T ss_dssp --------------EETTCCEEC---TTSBCCCTTCCEEEEEEECCSSCCC-CTTCCBSSCEEEEEESCTTCCEECTTSS
T ss_pred --------------cCCcccccC---chhhhhccccccccccccccccCCc-hhhcccchhhhhhhccccccccccccch
Confidence 223333322 3344555555555555555555444 23333445556666443 4443333334
Q ss_pred hcCC-CCCEEEccCCcccccCCccccCCCCccEEECcCCCcCccccchhhcCCCCCCEEecccccCCccc
Q 037325 261 FNIT-SLLCLDLGSNDLQGDIPDGFASLNSLQELDLSGNSFLGGQLSRNLGKLCNLRTMILSRNNISSEV 329 (598)
Q Consensus 261 ~~l~-~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~ 329 (598)
..+. .++.|++++|+++ .++.......+|+++++.++..+....+..|..+++|++|++++|+++...
T Consensus 150 ~~~~~~l~~L~L~~N~i~-~i~~~~f~~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~l~~lp 218 (350)
T 4ay9_X 150 VGLSFESVILWLNKNGIQ-EIHNSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLP 218 (350)
T ss_dssp TTSBSSCEEEECCSSCCC-EECTTSSTTEEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTSCCCCCC
T ss_pred hhcchhhhhhcccccccc-CCChhhccccchhHHhhccCCcccCCCHHHhccCcccchhhcCCCCcCccC
Confidence 4332 4556666666665 333333344556666665433132222234555555555555555555433
|
| >3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} | Back alignment and structure |
|---|
Probab=99.79 E-value=4.6e-19 Score=187.13 Aligned_cols=203 Identities=24% Similarity=0.255 Sum_probs=122.1
Q ss_pred CcccE-EecCCCCcEEEEEcCCCCCCCCCCcccCCCCCcceecCccccCCCCCCEEeCCCCCCCCCCcchhccCCCCCCE
Q 037325 64 SWSGV-SCNNRTASVIKLNLNNPFRDSFGSFEDDAGHELGGEISPSLLQLKDLEYLDLSMNNFTGFQVPEFIGSLKELRY 142 (598)
Q Consensus 64 ~w~gv-~c~~~~~~v~~L~L~~~~~~~~~~~~~~~~~~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~p~~~~~l~~L~~ 142 (598)
.|.++ .|. .++++.|++++ +++++ +|..+ +++|++|+|++|.++ .+| ..+++|++
T Consensus 49 ~~~~l~~C~--~~~L~~L~Ls~--------------n~L~~-lp~~l--~~~L~~L~Ls~N~l~--~ip---~~l~~L~~ 104 (571)
T 3cvr_A 49 AVSLLKECL--INQFSELQLNR--------------LNLSS-LPDNL--PPQITVLEITQNALI--SLP---ELPASLEY 104 (571)
T ss_dssp HHHHHHHHH--HTTCSEEECCS--------------SCCSC-CCSCC--CTTCSEEECCSSCCS--CCC---CCCTTCCE
T ss_pred hhhhccccc--cCCccEEEeCC--------------CCCCc-cCHhH--cCCCCEEECcCCCCc--ccc---cccCCCCE
Confidence 68888 785 35789999998 67776 66655 388999999999998 467 45789999
Q ss_pred EECcCCCCCcccchhccCCCCCCEEEccCCCCCCCccChhhhcCCCCCcEEEcCCCCCCCCcccchHhhhcCCCCCEEEc
Q 037325 143 LNLSGSFFSGTIPQTLGNLSNLLYLDLNNFLDQSNQIDLEWLSGLSSLVYFNLGGADLSKAGAYWLEVFNKLHSFVELHL 222 (598)
Q Consensus 143 L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~l~~L~~L~l 222 (598)
|++++|++++ +|. +.. +|++|++++|.+...+. .+++|++|++++|.++... . .+++|++|++
T Consensus 105 L~Ls~N~l~~-ip~-l~~--~L~~L~Ls~N~l~~lp~------~l~~L~~L~Ls~N~l~~lp----~---~l~~L~~L~L 167 (571)
T 3cvr_A 105 LDACDNRLST-LPE-LPA--SLKHLDVDNNQLTMLPE------LPALLEYINADNNQLTMLP----E---LPTSLEVLSV 167 (571)
T ss_dssp EECCSSCCSC-CCC-CCT--TCCEEECCSSCCSCCCC------CCTTCCEEECCSSCCSCCC----C---CCTTCCEEEC
T ss_pred EEccCCCCCC-cch-hhc--CCCEEECCCCcCCCCCC------cCccccEEeCCCCccCcCC----C---cCCCcCEEEC
Confidence 9999999985 777 655 78888888876644221 4566666666666665532 1 3445555555
Q ss_pred CCCCCCCCCCCCCcCCCCCccEEEccCCCCCCCcchhhhcCCCCCEEEccCCcccccCCccccCCCCccEEECcCCCcCc
Q 037325 223 PNCNLPSLPLSFPSLNFASLQVLDLSNNDFNSTTPHWLFNITSLLCLDLGSNDLQGDIPDGFASLNSLQELDLSGNSFLG 302 (598)
Q Consensus 223 ~~~~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~ 302 (598)
++|.+++++. +. ++|+.|++++|+++ .+|. +.. +| ....+.|+.|++++|.+ .
T Consensus 168 s~N~L~~lp~---l~--~~L~~L~Ls~N~L~-~lp~-~~~--~L-----------------~~~~~~L~~L~Ls~N~l-~ 220 (571)
T 3cvr_A 168 RNNQLTFLPE---LP--ESLEALDVSTNLLE-SLPA-VPV--RN-----------------HHSEETEIFFRCRENRI-T 220 (571)
T ss_dssp CSSCCSCCCC---CC--TTCCEEECCSSCCS-SCCC-CC---------------------------CCEEEECCSSCC-C
T ss_pred CCCCCCCcch---hh--CCCCEEECcCCCCC-chhh-HHH--hh-----------------hcccccceEEecCCCcc-e
Confidence 5555555433 11 45555555555544 2222 221 22 00001115556655553 2
Q ss_pred cccchhhcCCCCCCEEecccccCCcccchhhhC
Q 037325 303 GQLSRNLGKLCNLRTMILSRNNISSEVSDFLDG 335 (598)
Q Consensus 303 ~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~ 335 (598)
.+|..+..+++|+.|++++|.+++..|..+..
T Consensus 221 -~lp~~l~~l~~L~~L~L~~N~l~~~~p~~l~~ 252 (571)
T 3cvr_A 221 -HIPENILSLDPTCTIILEDNPLSSRIRESLSQ 252 (571)
T ss_dssp -CCCGGGGGSCTTEEEECCSSSCCHHHHHHHHH
T ss_pred -ecCHHHhcCCCCCEEEeeCCcCCCcCHHHHHH
Confidence 34555555556666666666665555554443
|
| >4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* | Back alignment and structure |
|---|
Probab=99.76 E-value=7.3e-18 Score=169.21 Aligned_cols=241 Identities=19% Similarity=0.145 Sum_probs=162.5
Q ss_pred CEEEccCCcccccCCccccCCCCccEEECcCCCcCccccchhhcCCCCCCEEecccccCCcccc-hhhhCCCCCCCCCCc
Q 037325 267 LCLDLGSNDLQGDIPDGFASLNSLQELDLSGNSFLGGQLSRNLGKLCNLRTMILSRNNISSEVS-DFLDGLSECTNSILL 345 (598)
Q Consensus 267 ~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~-~~~~~l~~~~~~~~L 345 (598)
++++.++++++ .+|..+ .+++++|++++|+ +....+..|.++++|++|++++|++.+.++ ..|..++ ++
T Consensus 12 ~~v~C~~~~Lt-~iP~~l--~~~l~~L~Ls~N~-i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~------~l 81 (350)
T 4ay9_X 12 RVFLCQESKVT-EIPSDL--PRNAIELRFVLTK-LRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLP------KL 81 (350)
T ss_dssp TEEEEESTTCC-SCCTTC--CTTCSEEEEESCC-CSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCT------TC
T ss_pred CEEEecCCCCC-ccCcCc--CCCCCEEEccCCc-CCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcch------hh
Confidence 56788888887 677655 3678999999998 454444578899999999999998876554 4566665 55
Q ss_pred c-EEEccCccccccCccccCCCCCCCEEEccCCcCCccchhhccCCCCCCEEeCcC-CcCCcccCCCchhhhcCC-CCCC
Q 037325 346 E-KLELRFNQFTGILPISLGSLKNLRHLVLWQNSFLGSIPPSIGNLTLLKELYLAS-NQMNGQKISDSYQHLKNQ-TELR 422 (598)
Q Consensus 346 ~-~L~Ls~n~l~~~~~~~l~~l~~L~~L~ls~n~l~~~~~~~l~~l~~L~~L~l~~-n~l~~~~~~~~~~~l~~~-~~L~ 422 (598)
. .+.+..|+++...|..+..+++|++|++++|++....+..+....++..+++.+ +.+.... +.. +..+ ..++
T Consensus 82 ~~~l~~~~N~l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~-~~~---f~~~~~~l~ 157 (350)
T 4ay9_X 82 HEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIE-RNS---FVGLSFESV 157 (350)
T ss_dssp CEEEEEEETTCCEECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEEC-TTS---STTSBSSCE
T ss_pred hhhhcccCCcccccCchhhhhccccccccccccccccCCchhhcccchhhhhhhcccccccccc-ccc---hhhcchhhh
Confidence 5 456677888877788888899999999999988866655566667788888865 4554433 322 3333 3577
Q ss_pred EEEccCccCccccchHHHhcCCCCCEEEccCCcCcccCCC-CcccC-CCCEEEcccCcCcccCCCCCcCCcEEEccCCcc
Q 037325 423 TLVLNKARISDTISDWFWQLSLTLDELDVAYNELRGRVPN-SLGFN-FPAKVDLSFNNFEGRLLLWSFNVTKLYLRDNSF 500 (598)
Q Consensus 423 ~L~l~~n~l~~~~~~~~~~~~~~L~~L~ls~n~~~~~~p~-~~~~~-~L~~l~ls~n~l~~~~~~~~~~L~~L~ls~n~l 500 (598)
.|++++|+++...+..+. ..+|+++++++++..+.+|. .+... .|+.|++++|+++...+..+.+|+.|.+.++.-
T Consensus 158 ~L~L~~N~i~~i~~~~f~--~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~l~~lp~~~~~~L~~L~~l~~~~ 235 (350)
T 4ay9_X 158 ILWLNKNGIQEIHNSAFN--GTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSYGLENLKKLRARSTYN 235 (350)
T ss_dssp EEECCSSCCCEECTTSST--TEEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTSCCCCCCSSSCTTCCEEECTTCTT
T ss_pred hhccccccccCCChhhcc--ccchhHHhhccCCcccCCCHHHhccCcccchhhcCCCCcCccChhhhccchHhhhccCCC
Confidence 888888888765444433 35688888876444445554 34443 777777777777754444566777777655543
Q ss_pred cccCCchhhcccCCCCCccccCCCCeEeCcCCcc
Q 037325 501 SGLIPNDIGQNLPFLTDLGNLKQLITLVISNNNL 534 (598)
Q Consensus 501 ~~~~p~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l 534 (598)
-..+| .+..+++|+.++++++..
T Consensus 236 l~~lP-----------~l~~l~~L~~l~l~~~~~ 258 (350)
T 4ay9_X 236 LKKLP-----------TLEKLVALMEASLTYPSH 258 (350)
T ss_dssp CCCCC-----------CTTTCCSCCEEECSCHHH
T ss_pred cCcCC-----------CchhCcChhhCcCCCCcc
Confidence 22444 223367777777766543
|
| >2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri} | Back alignment and structure |
|---|
Probab=99.76 E-value=1.3e-17 Score=154.25 Aligned_cols=110 Identities=30% Similarity=0.314 Sum_probs=44.3
Q ss_pred hcCCCCCEEEcCCCCCCCCCCCCCcCCCCCccEEEccCCCCCCCcchhhhcCCCCCEEEccCCcccccCCccccCCCCcc
Q 037325 212 NKLHSFVELHLPNCNLPSLPLSFPSLNFASLQVLDLSNNDFNSTTPHWLFNITSLLCLDLGSNDLQGDIPDGFASLNSLQ 291 (598)
Q Consensus 212 ~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~ 291 (598)
..+++|++|++++|.+++++. ..+..+++|++|++++|++++..+..+..+++|++|++++|.+++..+..+..+++|+
T Consensus 49 ~~l~~L~~L~l~~n~l~~~~~-~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~ 127 (208)
T 2o6s_A 49 DELTSLTQLYLGGNKLQSLPN-GVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLK 127 (208)
T ss_dssp TTCTTCSEEECCSSCCCCCCT-TTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCC
T ss_pred cccccCcEEECCCCccCccCh-hhcCCCCCcCEEECCCCcCCccCHhHhcCccCCCEEEcCCCcCcccCHhHhccCCcCC
Confidence 333444444444444433332 2233344444444444444433333334444444444444444433333334444444
Q ss_pred EEECcCCCcCccccchhhcCCCCCCEEecccc
Q 037325 292 ELDLSGNSFLGGQLSRNLGKLCNLRTMILSRN 323 (598)
Q Consensus 292 ~L~l~~n~~~~~~~~~~l~~l~~L~~L~l~~n 323 (598)
+|++++|. +.+..+..+..+++|++|++++|
T Consensus 128 ~L~l~~N~-l~~~~~~~~~~l~~L~~L~l~~N 158 (208)
T 2o6s_A 128 DLRLYQNQ-LKSVPDGVFDRLTSLQYIWLHDN 158 (208)
T ss_dssp EEECCSSC-CSCCCTTTTTTCTTCCEEECCSC
T ss_pred EEECCCCc-cceeCHHHhccCCCccEEEecCC
Confidence 44444444 22222223334444444444444
|
| >2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.75 E-value=1.4e-17 Score=155.19 Aligned_cols=86 Identities=20% Similarity=0.282 Sum_probs=45.7
Q ss_pred CCcEEEccCCcccccCCchhhcccCCCCCccccCCCCeEeCcCCccccccchhccCCCCCCEEECCCCcCccccchhccC
Q 037325 489 NVTKLYLRDNSFSGLIPNDIGQNLPFLTDLGNLKQLITLVISNNNLSGEIPLLFSNISFLYILDMSNNSLSGSTPESIGS 568 (598)
Q Consensus 489 ~L~~L~ls~n~l~~~~p~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~l~~ 568 (598)
+|++|++++|++++..|..+.. +++|++|+|++|.+++..|..|.++++|++|+|++|++++..|..|..
T Consensus 82 ~L~~L~Ls~N~l~~~~~~~~~~----------l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~ 151 (220)
T 2v70_A 82 GVNEILLTSNRLENVQHKMFKG----------LESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDT 151 (220)
T ss_dssp TCCEEECCSSCCCCCCGGGGTT----------CSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTT
T ss_pred CCCEEECCCCccCccCHhHhcC----------CcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcC
Confidence 4445555555554333333333 555555555555555555555555555555555555555555555555
Q ss_pred CCCCCEEEccCCCCcc
Q 037325 569 LRTVKFLVLRNNYLSG 584 (598)
Q Consensus 569 l~~L~~L~l~~n~l~g 584 (598)
+++|++|++++|++.+
T Consensus 152 l~~L~~L~L~~N~l~c 167 (220)
T 2v70_A 152 LHSLSTLNLLANPFNC 167 (220)
T ss_dssp CTTCCEEECCSCCEEC
T ss_pred CCCCCEEEecCcCCcC
Confidence 5555555555555543
|
| >3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} | Back alignment and structure |
|---|
Probab=99.75 E-value=3.6e-17 Score=153.43 Aligned_cols=163 Identities=20% Similarity=0.210 Sum_probs=109.1
Q ss_pred CCCCCCCCCCcccEEecCCCCcEEEEEcCCCCCCCCCCcccCCCCCcceecCccccCCCCCCEEeCCCCCCCCCCcchhc
Q 037325 55 SSWVGEDCCSWSGVSCNNRTASVIKLNLNNPFRDSFGSFEDDAGHELGGEISPSLLQLKDLEYLDLSMNNFTGFQVPEFI 134 (598)
Q Consensus 55 ~~W~~~~~c~w~gv~c~~~~~~v~~L~L~~~~~~~~~~~~~~~~~~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~p~~~ 134 (598)
..|.+...|.|.+|.|++ +++ +.+|..+. ++|++|+|++|.+++. .|..+
T Consensus 11 ~~~~~~~~Cs~~~v~c~~--------------------------~~l-~~ip~~~~--~~L~~L~Ls~n~i~~~-~~~~~ 60 (229)
T 3e6j_A 11 AACPSQCSCSGTTVDCRS--------------------------KRH-ASVPAGIP--TNAQILYLHDNQITKL-EPGVF 60 (229)
T ss_dssp CCCCTTCEEETTEEECTT--------------------------SCC-SSCCSCCC--TTCSEEECCSSCCCCC-CTTTT
T ss_pred ccCCCCCEEeCCEeEccC--------------------------CCc-CccCCCCC--CCCCEEEcCCCccCcc-CHHHh
Confidence 345788889999999974 222 23444333 8899999999999976 68888
Q ss_pred cCCCCCCEEECcCCCCCcccchhccCCCCCCEEEccCCCCCCCccChhhhcCCCCCcEEEcCCCCCCCCcccchHhhhcC
Q 037325 135 GSLKELRYLNLSGSFFSGTIPQTLGNLSNLLYLDLNNFLDQSNQIDLEWLSGLSSLVYFNLGGADLSKAGAYWLEVFNKL 214 (598)
Q Consensus 135 ~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~l 214 (598)
..+++|++|+|++|+++...+..|..+++|++|++++|.+.... ...+..+++|++|++++|.+... +..+..+
T Consensus 61 ~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~--~~~~~~l~~L~~L~Ls~N~l~~l----p~~~~~l 134 (229)
T 3e6j_A 61 DSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQLTVLP--SAVFDRLVHLKELFMCCNKLTEL----PRGIERL 134 (229)
T ss_dssp TTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCC--TTTTTTCTTCCEEECCSSCCCSC----CTTGGGC
T ss_pred hCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCCCcCCccC--hhHhCcchhhCeEeccCCccccc----CcccccC
Confidence 99999999999999998554556788888888888887654322 23355666666666666666644 3444555
Q ss_pred CCCCEEEcCCCCCCCCCCCCCcCCCCCccEEEccCCCCCC
Q 037325 215 HSFVELHLPNCNLPSLPLSFPSLNFASLQVLDLSNNDFNS 254 (598)
Q Consensus 215 ~~L~~L~l~~~~l~~~~~~~~~~~l~~L~~L~L~~n~l~~ 254 (598)
++|++|++++|.++.++. ..+..+++|+.|++++|.+..
T Consensus 135 ~~L~~L~L~~N~l~~~~~-~~~~~l~~L~~L~l~~N~~~c 173 (229)
T 3e6j_A 135 THLTHLALDQNQLKSIPH-GAFDRLSSLTHAYLFGNPWDC 173 (229)
T ss_dssp TTCSEEECCSSCCCCCCT-TTTTTCTTCCEEECTTSCBCT
T ss_pred CCCCEEECCCCcCCccCH-HHHhCCCCCCEEEeeCCCccC
Confidence 556666665555555544 344445555555555555543
|
| >1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A | Back alignment and structure |
|---|
Probab=99.75 E-value=2e-17 Score=176.63 Aligned_cols=171 Identities=23% Similarity=0.269 Sum_probs=130.4
Q ss_pred ccCCCCCCEEeCCCCCCCCCCcchhccCCCCCCEEECcCCCCCcccchhccCCCCCCEEEccCCCCCCCccChhhhcCCC
Q 037325 109 LLQLKDLEYLDLSMNNFTGFQVPEFIGSLKELRYLNLSGSFFSGTIPQTLGNLSNLLYLDLNNFLDQSNQIDLEWLSGLS 188 (598)
Q Consensus 109 l~~l~~L~~L~Ls~n~l~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~~l~ 188 (598)
+..+++|++|++++|.+.. ++ .+..+++|++|+|++|.+++..| +..+++|++|+|++|.+.... .+..++
T Consensus 39 ~~~L~~L~~L~l~~n~i~~--l~-~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~l~----~l~~l~ 109 (605)
T 1m9s_A 39 QNELNSIDQIIANNSDIKS--VQ-GIQYLPNVTKLFLNGNKLTDIKP--LTNLKNLGWLFLDENKIKDLS----SLKDLK 109 (605)
T ss_dssp HHHHTTCCCCBCTTCCCCC--CT-TGGGCTTCCEEECTTSCCCCCGG--GGGCTTCCEEECCSSCCCCCT----TSTTCT
T ss_pred hhcCCCCCEEECcCCCCCC--Ch-HHccCCCCCEEEeeCCCCCCChh--hccCCCCCEEECcCCCCCCCh----hhccCC
Confidence 4677888888998888874 44 47788899999999988885444 788888888888888765432 477788
Q ss_pred CCcEEEcCCCCCCCCcccchHhhhcCCCCCEEEcCCCCCCCCCCCCCcCCCCCccEEEccCCCCCCCcchhhhcCCCCCE
Q 037325 189 SLVYFNLGGADLSKAGAYWLEVFNKLHSFVELHLPNCNLPSLPLSFPSLNFASLQVLDLSNNDFNSTTPHWLFNITSLLC 268 (598)
Q Consensus 189 ~L~~L~l~~n~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~ 268 (598)
+|++|++++|.+... ..+..+++|+.|++++|.++++ ..+..+++|+.|+|++|.+++..| +..+++|+.
T Consensus 110 ~L~~L~Ls~N~l~~l-----~~l~~l~~L~~L~Ls~N~l~~l---~~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~ 179 (605)
T 1m9s_A 110 KLKSLSLEHNGISDI-----NGLVHLPQLESLYLGNNKITDI---TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQN 179 (605)
T ss_dssp TCCEEECTTSCCCCC-----GGGGGCTTCSEEECCSSCCCCC---GGGGSCTTCSEEECCSSCCCCCGG--GTTCTTCCE
T ss_pred CCCEEEecCCCCCCC-----ccccCCCccCEEECCCCccCCc---hhhcccCCCCEEECcCCcCCCchh--hccCCCCCE
Confidence 888888888888764 3577788888888888888776 345677788888888888876655 777788888
Q ss_pred EEccCCcccccCCccccCCCCccEEECcCCCc
Q 037325 269 LDLGSNDLQGDIPDGFASLNSLQELDLSGNSF 300 (598)
Q Consensus 269 L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~ 300 (598)
|++++|.+++. ..+..+++|+.|++++|++
T Consensus 180 L~Ls~N~i~~l--~~l~~l~~L~~L~L~~N~l 209 (605)
T 1m9s_A 180 LYLSKNHISDL--RALAGLKNLDVLELFSQEC 209 (605)
T ss_dssp EECCSSCCCBC--GGGTTCTTCSEEECCSEEE
T ss_pred EECcCCCCCCC--hHHccCCCCCEEEccCCcC
Confidence 88888877743 3477777888888888773
|
| >1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A | Back alignment and structure |
|---|
Probab=99.74 E-value=1.2e-17 Score=162.89 Aligned_cols=170 Identities=23% Similarity=0.276 Sum_probs=90.6
Q ss_pred ccCCCCCCEEeCCCCCCCCCCcchhccCCCCCCEEECcCCCCCcccchhccCCCCCCEEEccCCCCCCCccChhhhcCCC
Q 037325 109 LLQLKDLEYLDLSMNNFTGFQVPEFIGSLKELRYLNLSGSFFSGTIPQTLGNLSNLLYLDLNNFLDQSNQIDLEWLSGLS 188 (598)
Q Consensus 109 l~~l~~L~~L~Ls~n~l~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~~l~ 188 (598)
+..+++|++|++++|.+.. ++ .+..+++|++|++++|++++. +. +..+++|++|++++|.+... ..+..++
T Consensus 42 ~~~l~~L~~L~l~~~~i~~--~~-~~~~l~~L~~L~L~~n~l~~~-~~-l~~l~~L~~L~l~~n~l~~~----~~l~~l~ 112 (291)
T 1h6t_A 42 QNELNSIDQIIANNSDIKS--VQ-GIQYLPNVTKLFLNGNKLTDI-KP-LANLKNLGWLFLDENKVKDL----SSLKDLK 112 (291)
T ss_dssp HHHHHTCCEEECTTSCCCC--CT-TGGGCTTCCEEECCSSCCCCC-GG-GTTCTTCCEEECCSSCCCCG----GGGTTCT
T ss_pred hhhcCcccEEEccCCCccc--Ch-hHhcCCCCCEEEccCCccCCC-cc-cccCCCCCEEECCCCcCCCC----hhhccCC
Confidence 3456777788888777763 33 366677788888888777743 33 77777777777777655432 2255556
Q ss_pred CCcEEEcCCCCCCCCcccchHhhhcCCCCCEEEcCCCCCCCCCCCCCcCCCCCccEEEccCCCCCCCcchhhhcCCCCCE
Q 037325 189 SLVYFNLGGADLSKAGAYWLEVFNKLHSFVELHLPNCNLPSLPLSFPSLNFASLQVLDLSNNDFNSTTPHWLFNITSLLC 268 (598)
Q Consensus 189 ~L~~L~l~~n~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~ 268 (598)
+|++|++++|.+.+. ..+..+++|++|++++|.+++. ..+..+++|++|++++|++++..+ +..+++|+.
T Consensus 113 ~L~~L~L~~n~i~~~-----~~l~~l~~L~~L~l~~n~l~~~---~~l~~l~~L~~L~L~~N~l~~~~~--l~~l~~L~~ 182 (291)
T 1h6t_A 113 KLKSLSLEHNGISDI-----NGLVHLPQLESLYLGNNKITDI---TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQN 182 (291)
T ss_dssp TCCEEECTTSCCCCC-----GGGGGCTTCCEEECCSSCCCCC---GGGGGCTTCSEEECCSSCCCCCGG--GTTCTTCCE
T ss_pred CCCEEECCCCcCCCC-----hhhcCCCCCCEEEccCCcCCcc---hhhccCCCCCEEEccCCccccchh--hcCCCccCE
Confidence 666666666655543 2344445555555555544443 123344444444444444443322 444444444
Q ss_pred EEccCCcccccCCccccCCCCccEEECcCCC
Q 037325 269 LDLGSNDLQGDIPDGFASLNSLQELDLSGNS 299 (598)
Q Consensus 269 L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~ 299 (598)
|++++|.+++ ++ .+..+++|+.|++++|+
T Consensus 183 L~L~~N~i~~-l~-~l~~l~~L~~L~l~~n~ 211 (291)
T 1h6t_A 183 LYLSKNHISD-LR-ALAGLKNLDVLELFSQE 211 (291)
T ss_dssp EECCSSCCCB-CG-GGTTCTTCSEEEEEEEE
T ss_pred EECCCCcCCC-Ch-hhccCCCCCEEECcCCc
Confidence 4444444432 11 13334444444444443
|
| >1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A | Back alignment and structure |
|---|
Probab=99.73 E-value=2.2e-17 Score=160.89 Aligned_cols=172 Identities=27% Similarity=0.371 Sum_probs=101.4
Q ss_pred hcCCCCCEEEcCCCCCCCCCCCCCcCCCCCccEEEccCCCCCCCcchhhhcCCCCCEEEccCCcccccCCccccCCCCcc
Q 037325 212 NKLHSFVELHLPNCNLPSLPLSFPSLNFASLQVLDLSNNDFNSTTPHWLFNITSLLCLDLGSNDLQGDIPDGFASLNSLQ 291 (598)
Q Consensus 212 ~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~ 291 (598)
..+++|++|++++|.++..+. +..+++|++|++++|++++..+ +.++++|+.|++++|.+++ ++ .+..+++|+
T Consensus 43 ~~l~~L~~L~l~~~~i~~~~~---~~~l~~L~~L~L~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~-~~-~l~~l~~L~ 115 (291)
T 1h6t_A 43 NELNSIDQIIANNSDIKSVQG---IQYLPNVTKLFLNGNKLTDIKP--LANLKNLGWLFLDENKVKD-LS-SLKDLKKLK 115 (291)
T ss_dssp HHHHTCCEEECTTSCCCCCTT---GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCC-GG-GGTTCTTCC
T ss_pred hhcCcccEEEccCCCcccChh---HhcCCCCCEEEccCCccCCCcc--cccCCCCCEEECCCCcCCC-Ch-hhccCCCCC
Confidence 345566666666666655532 4455666666666666665443 6666666666666666653 22 366666666
Q ss_pred EEECcCCCcCccccchhhcCCCCCCEEecccccCCcccchhhhCCCCCCCCCCccEEEccCccccccCccccCCCCCCCE
Q 037325 292 ELDLSGNSFLGGQLSRNLGKLCNLRTMILSRNNISSEVSDFLDGLSECTNSILLEKLELRFNQFTGILPISLGSLKNLRH 371 (598)
Q Consensus 292 ~L~l~~n~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~ 371 (598)
+|++++|.+ .+ + ..+..+++|+.|++++|.+.+. ..+..++ +|++|++++|.+++..+ +..+++|+.
T Consensus 116 ~L~L~~n~i-~~-~-~~l~~l~~L~~L~l~~n~l~~~--~~l~~l~------~L~~L~L~~N~l~~~~~--l~~l~~L~~ 182 (291)
T 1h6t_A 116 SLSLEHNGI-SD-I-NGLVHLPQLESLYLGNNKITDI--TVLSRLT------KLDTLSLEDNQISDIVP--LAGLTKLQN 182 (291)
T ss_dssp EEECTTSCC-CC-C-GGGGGCTTCCEEECCSSCCCCC--GGGGGCT------TCSEEECCSSCCCCCGG--GTTCTTCCE
T ss_pred EEECCCCcC-CC-C-hhhcCCCCCCEEEccCCcCCcc--hhhccCC------CCCEEEccCCccccchh--hcCCCccCE
Confidence 666666663 22 2 3455666666666666666554 2344444 56666666666664433 566666666
Q ss_pred EEccCCcCCccchhhccCCCCCCEEeCcCCcCCc
Q 037325 372 LVLWQNSFLGSIPPSIGNLTLLKELYLASNQMNG 405 (598)
Q Consensus 372 L~ls~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~ 405 (598)
|++++|++++ ++ .+..+++|+.|++++|+++.
T Consensus 183 L~L~~N~i~~-l~-~l~~l~~L~~L~l~~n~i~~ 214 (291)
T 1h6t_A 183 LYLSKNHISD-LR-ALAGLKNLDVLELFSQECLN 214 (291)
T ss_dssp EECCSSCCCB-CG-GGTTCTTCSEEEEEEEEEEC
T ss_pred EECCCCcCCC-Ch-hhccCCCCCEEECcCCcccC
Confidence 6666666653 33 25666666666666666554
|
| >1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A | Back alignment and structure |
|---|
Probab=99.70 E-value=1.4e-16 Score=170.26 Aligned_cols=172 Identities=26% Similarity=0.365 Sum_probs=84.2
Q ss_pred cCCCCCEEEcCCCCCCCCCCCCCcCCCCCccEEEccCCCCCCCcchhhhcCCCCCEEEccCCcccccCCccccCCCCccE
Q 037325 213 KLHSFVELHLPNCNLPSLPLSFPSLNFASLQVLDLSNNDFNSTTPHWLFNITSLLCLDLGSNDLQGDIPDGFASLNSLQE 292 (598)
Q Consensus 213 ~l~~L~~L~l~~~~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~ 292 (598)
.++.|+.|++++|.+..++ .+..+++|+.|+|++|.+++..+ +..+++|+.|++++|.+.+ ++ .+..+++|+.
T Consensus 41 ~L~~L~~L~l~~n~i~~l~---~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~-l~-~l~~l~~L~~ 113 (605)
T 1m9s_A 41 ELNSIDQIIANNSDIKSVQ---GIQYLPNVTKLFLNGNKLTDIKP--LTNLKNLGWLFLDENKIKD-LS-SLKDLKKLKS 113 (605)
T ss_dssp HHTTCCCCBCTTCCCCCCT---TGGGCTTCCEEECTTSCCCCCGG--GGGCTTCCEEECCSSCCCC-CT-TSTTCTTCCE
T ss_pred cCCCCCEEECcCCCCCCCh---HHccCCCCCEEEeeCCCCCCChh--hccCCCCCEEECcCCCCCC-Ch-hhccCCCCCE
Confidence 3444444455555444442 23344555555555555544333 4455555555555555542 22 3445555555
Q ss_pred EECcCCCcCccccchhhcCCCCCCEEecccccCCcccchhhhCCCCCCCCCCccEEEccCccccccCccccCCCCCCCEE
Q 037325 293 LDLSGNSFLGGQLSRNLGKLCNLRTMILSRNNISSEVSDFLDGLSECTNSILLEKLELRFNQFTGILPISLGSLKNLRHL 372 (598)
Q Consensus 293 L~l~~n~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L 372 (598)
|++++|.+ .. + ..+..+++|+.|++++|.+.+. ..+..++ +|+.|+|++|.+.+..| +..+++|+.|
T Consensus 114 L~Ls~N~l-~~-l-~~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~------~L~~L~Ls~N~l~~~~~--l~~l~~L~~L 180 (605)
T 1m9s_A 114 LSLEHNGI-SD-I-NGLVHLPQLESLYLGNNKITDI--TVLSRLT------KLDTLSLEDNQISDIVP--LAGLTKLQNL 180 (605)
T ss_dssp EECTTSCC-CC-C-GGGGGCTTCSEEECCSSCCCCC--GGGGSCT------TCSEEECCSSCCCCCGG--GTTCTTCCEE
T ss_pred EEecCCCC-CC-C-ccccCCCccCEEECCCCccCCc--hhhcccC------CCCEEECcCCcCCCchh--hccCCCCCEE
Confidence 55555552 22 1 2344555555555555555443 2333333 45555555555554333 4555555555
Q ss_pred EccCCcCCccchhhccCCCCCCEEeCcCCcCCcc
Q 037325 373 VLWQNSFLGSIPPSIGNLTLLKELYLASNQMNGQ 406 (598)
Q Consensus 373 ~ls~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~ 406 (598)
++++|++.+. + .+..+++|+.|++++|++++.
T Consensus 181 ~Ls~N~i~~l-~-~l~~l~~L~~L~L~~N~l~~~ 212 (605)
T 1m9s_A 181 YLSKNHISDL-R-ALAGLKNLDVLELFSQECLNK 212 (605)
T ss_dssp ECCSSCCCBC-G-GGTTCTTCSEEECCSEEEECC
T ss_pred ECcCCCCCCC-h-HHccCCCCCEEEccCCcCcCC
Confidence 5555555532 2 355555555555555555443
|
| >2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.69 E-value=1.5e-16 Score=160.27 Aligned_cols=176 Identities=26% Similarity=0.296 Sum_probs=100.6
Q ss_pred CEEEcCCCCCCCCCCCCCcCCCCCccEEEccCCCCCCCcchhhh-cCCCCCEEEccCCcccccCCccccCCCCccEEECc
Q 037325 218 VELHLPNCNLPSLPLSFPSLNFASLQVLDLSNNDFNSTTPHWLF-NITSLLCLDLGSNDLQGDIPDGFASLNSLQELDLS 296 (598)
Q Consensus 218 ~~L~l~~~~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~-~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~ 296 (598)
+.++++++.++.+|... .+.++.|++++|++++..+..+. ++++|+.|++++|.+++..+..|..+++|++|+++
T Consensus 21 ~~l~c~~~~l~~iP~~~----~~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls 96 (361)
T 2xot_A 21 NILSCSKQQLPNVPQSL----PSYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLS 96 (361)
T ss_dssp TEEECCSSCCSSCCSSC----CTTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECC
T ss_pred CEEEeCCCCcCccCccC----CCCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECC
Confidence 34555555555544311 13466666666666655555555 66666666666666665555556666666666666
Q ss_pred CCCcCccccchhhcCCCCCCEEecccccCCcccchhhhCCCCCCCCCCccEEEccCccccccCcccc---CCCCCCCEEE
Q 037325 297 GNSFLGGQLSRNLGKLCNLRTMILSRNNISSEVSDFLDGLSECTNSILLEKLELRFNQFTGILPISL---GSLKNLRHLV 373 (598)
Q Consensus 297 ~n~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~~~~~~~L~~L~Ls~n~l~~~~~~~l---~~l~~L~~L~ 373 (598)
+|. +....+..|..+++|++|++++|++.+..+..|..++ +|++|++++|.+++..+..+ ..+++|+.|+
T Consensus 97 ~N~-l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~------~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~ 169 (361)
T 2xot_A 97 SNH-LHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMA------QLQKLYLSQNQISRFPVELIKDGNKLPKLMLLD 169 (361)
T ss_dssp SSC-CCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCT------TCCEEECCSSCCCSCCGGGTC----CTTCCEEE
T ss_pred CCc-CCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcc------cCCEEECCCCcCCeeCHHHhcCcccCCcCCEEE
Confidence 666 4444444566666666666666666655555555555 56666666666664333333 3466666666
Q ss_pred ccCCcCCccchhhccCCCC--CCEEeCcCCcCC
Q 037325 374 LWQNSFLGSIPPSIGNLTL--LKELYLASNQMN 404 (598)
Q Consensus 374 ls~n~l~~~~~~~l~~l~~--L~~L~l~~n~l~ 404 (598)
+++|++.+..+..+..++. ++.|++++|++.
T Consensus 170 L~~N~l~~l~~~~~~~l~~~~l~~l~l~~N~~~ 202 (361)
T 2xot_A 170 LSSNKLKKLPLTDLQKLPAWVKNGLYLHNNPLE 202 (361)
T ss_dssp CCSSCCCCCCHHHHHHSCHHHHTTEECCSSCEE
T ss_pred CCCCCCCccCHHHhhhccHhhcceEEecCCCcc
Confidence 6666666444445555554 356666666554
|
| >2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.69 E-value=3.8e-16 Score=145.38 Aligned_cols=134 Identities=23% Similarity=0.297 Sum_probs=78.3
Q ss_pred CCEEEccCCcccccCC-ccccCCCCccEEECcCCCcCccccchhhcCCCCCCEEecccccCCcccchhhhCCCCCCCCCC
Q 037325 266 LLCLDLGSNDLQGDIP-DGFASLNSLQELDLSGNSFLGGQLSRNLGKLCNLRTMILSRNNISSEVSDFLDGLSECTNSIL 344 (598)
Q Consensus 266 L~~L~l~~n~l~~~~~-~~l~~l~~L~~L~l~~n~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~~~~~~~ 344 (598)
++.|++++|.+++..+ ..+..+++|++|++++|. +.+..+..+..+++|++|++++|.+++..+..+..++ +
T Consensus 34 ~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~-i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~------~ 106 (220)
T 2v70_A 34 TAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNK-ITDIEEGAFEGASGVNEILLTSNRLENVQHKMFKGLE------S 106 (220)
T ss_dssp CSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSC-CCEECTTTTTTCTTCCEEECCSSCCCCCCGGGGTTCS------S
T ss_pred CCEEEcCCCcCCccCchhhhccCCCCCEEECCCCc-CCEECHHHhCCCCCCCEEECCCCccCccCHhHhcCCc------C
Confidence 3444444444443322 224445555555555555 3333344555555566666666655555555555555 5
Q ss_pred ccEEEccCccccccCccccCCCCCCCEEEccCCcCCccchhhccCCCCCCEEeCcCCcCCcc
Q 037325 345 LEKLELRFNQFTGILPISLGSLKNLRHLVLWQNSFLGSIPPSIGNLTLLKELYLASNQMNGQ 406 (598)
Q Consensus 345 L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~ls~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~ 406 (598)
|++|++++|.+++..|..+..+++|++|++++|++++..|..+..+++|+.|++++|.+.+.
T Consensus 107 L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~ 168 (220)
T 2v70_A 107 LKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPFNCN 168 (220)
T ss_dssp CCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCEECS
T ss_pred CCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCCcCC
Confidence 66666666666666666666666777777777777666666666677777777777766543
|
| >2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A | Back alignment and structure |
|---|
Probab=99.69 E-value=3.3e-16 Score=145.80 Aligned_cols=133 Identities=23% Similarity=0.323 Sum_probs=62.9
Q ss_pred CCCEEEccCCcccccCCccccCCCCccEEECcCCCcCccccchhhcCCCCCCEEecccccCCcccchhhhCCCCCCCCCC
Q 037325 265 SLLCLDLGSNDLQGDIPDGFASLNSLQELDLSGNSFLGGQLSRNLGKLCNLRTMILSRNNISSEVSDFLDGLSECTNSIL 344 (598)
Q Consensus 265 ~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~~~~~~~ 344 (598)
+++.|++++|.+++..+..|..+++|++|++++|. +....|..|..+++|++|++++|+++...+..|..++ +
T Consensus 33 ~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~-i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~------~ 105 (220)
T 2v9t_B 33 TITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQ-ISELAPDAFQGLRSLNSLVLYGNKITELPKSLFEGLF------S 105 (220)
T ss_dssp TCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSC-CCEECTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCT------T
T ss_pred CCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCc-CCCcCHHHhhCCcCCCEEECCCCcCCccCHhHccCCC------C
Confidence 34444444444443333334444444444444444 3333344444444444444444444443333344444 4
Q ss_pred ccEEEccCccccccCccccCCCCCCCEEEccCCcCCccchhhccCCCCCCEEeCcCCcCC
Q 037325 345 LEKLELRFNQFTGILPISLGSLKNLRHLVLWQNSFLGSIPPSIGNLTLLKELYLASNQMN 404 (598)
Q Consensus 345 L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~ls~n~l~~~~~~~l~~l~~L~~L~l~~n~l~ 404 (598)
|++|++++|.+++..+..+..+++|+.|++++|++++..+..+..+++|++|++++|++.
T Consensus 106 L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~ 165 (220)
T 2v9t_B 106 LQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPFI 165 (220)
T ss_dssp CCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCEE
T ss_pred CCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCCcC
Confidence 555555555555444445555555555555555555444444555555555555555543
|
| >2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.68 E-value=3.1e-16 Score=157.91 Aligned_cols=177 Identities=25% Similarity=0.207 Sum_probs=122.6
Q ss_pred ccEEEccCCCCCCCcchhhhcCCCCCEEEccCCcccccCCcccc-CCCCccEEECcCCCcCccccchhhcCCCCCCEEec
Q 037325 242 LQVLDLSNNDFNSTTPHWLFNITSLLCLDLGSNDLQGDIPDGFA-SLNSLQELDLSGNSFLGGQLSRNLGKLCNLRTMIL 320 (598)
Q Consensus 242 L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~-~l~~L~~L~l~~n~~~~~~~~~~l~~l~~L~~L~l 320 (598)
-+.++++++.++. +|..+ .+.++.|++++|.+++..+..+. .+++|++|++++|. +....+..|..+++|++|++
T Consensus 20 ~~~l~c~~~~l~~-iP~~~--~~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~-i~~i~~~~~~~l~~L~~L~L 95 (361)
T 2xot_A 20 SNILSCSKQQLPN-VPQSL--PSYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNH-LNFISSEAFVPVPNLRYLDL 95 (361)
T ss_dssp TTEEECCSSCCSS-CCSSC--CTTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSC-CCEECTTTTTTCTTCCEEEC
T ss_pred CCEEEeCCCCcCc-cCccC--CCCCCEEECCCCCCCccChhhhhhcccccCEEECCCCc-CCccChhhccCCCCCCEEEC
Confidence 3578888887764 44433 24577888888888766666666 77888888888887 55555567777888888888
Q ss_pred ccccCCcccchhhhCCCCCCCCCCccEEEccCccccccCccccCCCCCCCEEEccCCcCCccchhhc---cCCCCCCEEe
Q 037325 321 SRNNISSEVSDFLDGLSECTNSILLEKLELRFNQFTGILPISLGSLKNLRHLVLWQNSFLGSIPPSI---GNLTLLKELY 397 (598)
Q Consensus 321 ~~n~l~~~~~~~~~~l~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~ls~n~l~~~~~~~l---~~l~~L~~L~ 397 (598)
++|++....+..|..++ +|++|++++|.+++..+..+..+++|+.|++++|++++..+..+ ..+++|+.|+
T Consensus 96 s~N~l~~~~~~~~~~l~------~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~ 169 (361)
T 2xot_A 96 SSNHLHTLDEFLFSDLQ------ALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLD 169 (361)
T ss_dssp CSSCCCEECTTTTTTCT------TCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEE
T ss_pred CCCcCCcCCHHHhCCCc------CCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEE
Confidence 88887776666666666 78888888888877667777777888888888887775433334 4577777888
Q ss_pred CcCCcCCcccCCCchhhhcCCCC--CCEEEccCccCc
Q 037325 398 LASNQMNGQKISDSYQHLKNQTE--LRTLVLNKARIS 432 (598)
Q Consensus 398 l~~n~l~~~~~~~~~~~l~~~~~--L~~L~l~~n~l~ 432 (598)
+++|+++... + ..+..++. ++.|++++|.+.
T Consensus 170 L~~N~l~~l~-~---~~~~~l~~~~l~~l~l~~N~~~ 202 (361)
T 2xot_A 170 LSSNKLKKLP-L---TDLQKLPAWVKNGLYLHNNPLE 202 (361)
T ss_dssp CCSSCCCCCC-H---HHHHHSCHHHHTTEECCSSCEE
T ss_pred CCCCCCCccC-H---HHhhhccHhhcceEEecCCCcc
Confidence 8877776543 2 23444444 366777777765
|
| >2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A | Back alignment and structure |
|---|
Probab=99.68 E-value=5.4e-16 Score=144.39 Aligned_cols=153 Identities=24% Similarity=0.308 Sum_probs=119.7
Q ss_pred CEEEcCCCCCCCCCCCCCcCCCCCccEEEccCCCCCCCcchhhhcCCCCCEEEccCCcccccCCccccCCCCccEEECcC
Q 037325 218 VELHLPNCNLPSLPLSFPSLNFASLQVLDLSNNDFNSTTPHWLFNITSLLCLDLGSNDLQGDIPDGFASLNSLQELDLSG 297 (598)
Q Consensus 218 ~~L~l~~~~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~ 297 (598)
+.++.+++.++.+|... .+++++|++++|++++..+..+..+++|+.|++++|.+++..|..|..+++|++|++++
T Consensus 14 ~~v~c~~~~l~~iP~~l----~~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~ 89 (220)
T 2v9t_B 14 NIVDCRGKGLTEIPTNL----PETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYG 89 (220)
T ss_dssp TEEECTTSCCSSCCSSC----CTTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCS
T ss_pred CEEEcCCCCcCcCCCcc----CcCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCC
Confidence 45666666666665422 15788888888888876666788888888888888888877777888888888888888
Q ss_pred CCcCccccchhhcCCCCCCEEecccccCCcccchhhhCCCCCCCCCCccEEEccCccccccCccccCCCCCCCEEEccCC
Q 037325 298 NSFLGGQLSRNLGKLCNLRTMILSRNNISSEVSDFLDGLSECTNSILLEKLELRFNQFTGILPISLGSLKNLRHLVLWQN 377 (598)
Q Consensus 298 n~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~ls~n 377 (598)
|. +....+..+..+++|++|++++|.+.+..+..+..++ +|++|++++|.+++..+..+..+++|+.|++++|
T Consensus 90 N~-l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~------~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N 162 (220)
T 2v9t_B 90 NK-ITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLH------NLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQN 162 (220)
T ss_dssp SC-CCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCT------TCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSS
T ss_pred Cc-CCccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCC------CCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCC
Confidence 88 4555555677888888888888888888777777777 7888999999888777777888888999999988
Q ss_pred cCCc
Q 037325 378 SFLG 381 (598)
Q Consensus 378 ~l~~ 381 (598)
++..
T Consensus 163 ~~~c 166 (220)
T 2v9t_B 163 PFIC 166 (220)
T ss_dssp CEEC
T ss_pred CcCC
Confidence 8764
|
| >1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* | Back alignment and structure |
|---|
Probab=99.68 E-value=2.4e-19 Score=190.42 Aligned_cols=89 Identities=27% Similarity=0.290 Sum_probs=76.4
Q ss_pred CcCCcEEEccCCcccccCCchhhcccCCCCCccccCCCCeEeCcCCccccccchhccCCCCCCEEECCCCcCcccc-chh
Q 037325 487 SFNVTKLYLRDNSFSGLIPNDIGQNLPFLTDLGNLKQLITLVISNNNLSGEIPLLFSNISFLYILDMSNNSLSGST-PES 565 (598)
Q Consensus 487 ~~~L~~L~ls~n~l~~~~p~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~-p~~ 565 (598)
+++|+.|++++|+++ .+|..++. +++|+.|+|++|.+++ +| .++++++|++|+|++|++++.. |..
T Consensus 462 l~~L~~L~Ls~N~l~-~lp~~~~~----------l~~L~~L~Ls~N~l~~-lp-~l~~l~~L~~L~Ls~N~l~~~~~p~~ 528 (567)
T 1dce_A 462 LLLVTHLDLSHNRLR-ALPPALAA----------LRCLEVLQASDNALEN-VD-GVANLPRLQELLLCNNRLQQSAAIQP 528 (567)
T ss_dssp GTTCCEEECCSSCCC-CCCGGGGG----------CTTCCEEECCSSCCCC-CG-GGTTCSSCCEEECCSSCCCSSSTTGG
T ss_pred cccCcEeecCccccc-ccchhhhc----------CCCCCEEECCCCCCCC-Cc-ccCCCCCCcEEECCCCCCCCCCCcHH
Confidence 467888888888888 78888877 8899999999999985 77 7899999999999999999776 889
Q ss_pred ccCCCCCCEEEccCCCCcccCCc
Q 037325 566 IGSLRTVKFLVLRNNYLSGKLPL 588 (598)
Q Consensus 566 l~~l~~L~~L~l~~n~l~g~~P~ 588 (598)
++.+++|+.|++++|++++..|.
T Consensus 529 l~~l~~L~~L~L~~N~l~~~~~~ 551 (567)
T 1dce_A 529 LVSCPRLVLLNLQGNSLCQEEGI 551 (567)
T ss_dssp GGGCTTCCEEECTTSGGGGSSSC
T ss_pred HhcCCCCCEEEecCCcCCCCccH
Confidence 99999999999999999876553
|
| >4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=99.67 E-value=2.7e-16 Score=143.86 Aligned_cols=153 Identities=17% Similarity=0.272 Sum_probs=73.3
Q ss_pred cCCCCCEEEccCCcccccCCccccCCCCccEEECcCCCcCccccchhhcCCCCCCEEecccccCCcccchhhhCCCCCCC
Q 037325 262 NITSLLCLDLGSNDLQGDIPDGFASLNSLQELDLSGNSFLGGQLSRNLGKLCNLRTMILSRNNISSEVSDFLDGLSECTN 341 (598)
Q Consensus 262 ~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~~~~ 341 (598)
.+++|+.|++++|.+. .+| .+..+++|++|++++|.+ . .+..+..+++|++|++++|.+.+..+..+..++
T Consensus 42 ~l~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~l~~n~~-~--~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~---- 112 (197)
T 4ezg_A 42 QMNSLTYITLANINVT-DLT-GIEYAHNIKDLTINNIHA-T--NYNPISGLSNLERLRIMGKDVTSDKIPNLSGLT---- 112 (197)
T ss_dssp HHHTCCEEEEESSCCS-CCT-TGGGCTTCSEEEEESCCC-S--CCGGGTTCTTCCEEEEECTTCBGGGSCCCTTCT----
T ss_pred hcCCccEEeccCCCcc-ChH-HHhcCCCCCEEEccCCCC-C--cchhhhcCCCCCEEEeECCccCcccChhhcCCC----
Confidence 3444555555555444 233 344445555555555531 1 122344455555555555555544444444444
Q ss_pred CCCccEEEccCccccccCccccCCCCCCCEEEccCCcCCccchhhccCCCCCCEEeCcCCcCCcccCCCchhhhcCCCCC
Q 037325 342 SILLEKLELRFNQFTGILPISLGSLKNLRHLVLWQNSFLGSIPPSIGNLTLLKELYLASNQMNGQKISDSYQHLKNQTEL 421 (598)
Q Consensus 342 ~~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~ls~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~~~~L 421 (598)
+|++|++++|.+++..+..+..+++|++|++++|+..+.++ .+..+++|++|++++|.+++.. .+..+++|
T Consensus 113 --~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~-~l~~l~~L~~L~l~~n~i~~~~------~l~~l~~L 183 (197)
T 4ezg_A 113 --SLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIM-PLKTLPELKSLNIQFDGVHDYR------GIEDFPKL 183 (197)
T ss_dssp --TCCEEECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCCCCG-GGGGCSSCCEEECTTBCCCCCT------TGGGCSSC
T ss_pred --CCCEEEecCCccCcHhHHHHhhCCCCCEEEccCCCCccccH-hhcCCCCCCEEECCCCCCcChH------HhccCCCC
Confidence 45555555555554445555555555555555555222333 3555555555555555554321 24444555
Q ss_pred CEEEccCccCc
Q 037325 422 RTLVLNKARIS 432 (598)
Q Consensus 422 ~~L~l~~n~l~ 432 (598)
+.|++++|++.
T Consensus 184 ~~L~l~~N~i~ 194 (197)
T 4ezg_A 184 NQLYAFSQTIG 194 (197)
T ss_dssp CEEEECBC---
T ss_pred CEEEeeCcccC
Confidence 55555555543
|
| >1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* | Back alignment and structure |
|---|
Probab=99.66 E-value=3.6e-19 Score=189.06 Aligned_cols=188 Identities=26% Similarity=0.211 Sum_probs=99.6
Q ss_pred cCCCCCCEEeCCCCCCCCCCcchhccCCCCCCEEECcCCC-------------CCcccchhccCCCCCCEEE-ccCCCCC
Q 037325 110 LQLKDLEYLDLSMNNFTGFQVPEFIGSLKELRYLNLSGSF-------------FSGTIPQTLGNLSNLLYLD-LNNFLDQ 175 (598)
Q Consensus 110 ~~l~~L~~L~Ls~n~l~~~~~p~~~~~l~~L~~L~L~~n~-------------l~~~~p~~l~~l~~L~~L~-L~~n~~~ 175 (598)
..+++|+.|+|++|+++ .+|..++++++|+.|++++|. ..+..|..++.+++|++|+ ++.|.
T Consensus 346 ~~~~~L~~L~Ls~n~L~--~Lp~~i~~l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~l~~l~~L~~L~~l~~n~-- 421 (567)
T 1dce_A 346 ATDEQLFRCELSVEKST--VLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAY-- 421 (567)
T ss_dssp STTTTSSSCCCCHHHHH--HHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHH--
T ss_pred ccCccceeccCChhhHH--hhHHHHHHHHHHHHhccccchhhhhHHHHHHhcccccCCHHHHHHHHhcccCcchhhcc--
Confidence 45677777777777776 467777777777777776553 3344455555555555555 33211
Q ss_pred CCccChhhhcCCCCCcEEEcCCCCCCCCcccchHhhhcCCCCCEEEcCCCCCCCCCCCCCcCCCCCccEEEccCCCCCCC
Q 037325 176 SNQIDLEWLSGLSSLVYFNLGGADLSKAGAYWLEVFNKLHSFVELHLPNCNLPSLPLSFPSLNFASLQVLDLSNNDFNST 255 (598)
Q Consensus 176 ~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~ 255 (598)
++.|+.+.+++|.+.... ...|+.|++++|.+++++. +..+++|+.|++++|.++ .
T Consensus 422 -----------~~~L~~l~l~~n~i~~l~---------~~~L~~L~Ls~n~l~~lp~---~~~l~~L~~L~Ls~N~l~-~ 477 (567)
T 1dce_A 422 -----------LDDLRSKFLLENSVLKME---------YADVRVLHLAHKDLTVLCH---LEQLLLVTHLDLSHNRLR-A 477 (567)
T ss_dssp -----------HHHHHHHHHHHHHHHHHH---------HTTCSEEECTTSCCSSCCC---GGGGTTCCEEECCSSCCC-C
T ss_pred -----------cchhhhhhhhcccccccC---------ccCceEEEecCCCCCCCcC---ccccccCcEeecCccccc-c
Confidence 111222222222222110 1235566666666655432 445556666666666655 4
Q ss_pred cchhhhcCCCCCEEEccCCcccccCCccccCCCCccEEECcCCCcCcccc-chhhcCCCCCCEEecccccCCcc
Q 037325 256 TPHWLFNITSLLCLDLGSNDLQGDIPDGFASLNSLQELDLSGNSFLGGQL-SRNLGKLCNLRTMILSRNNISSE 328 (598)
Q Consensus 256 ~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~-~~~l~~l~~L~~L~l~~n~l~~~ 328 (598)
+|..+..+++|+.|++++|.+++ +| .++.+++|+.|++++|. +.+.. |..++.+++|+.|++++|.+++.
T Consensus 478 lp~~~~~l~~L~~L~Ls~N~l~~-lp-~l~~l~~L~~L~Ls~N~-l~~~~~p~~l~~l~~L~~L~L~~N~l~~~ 548 (567)
T 1dce_A 478 LPPALAALRCLEVLQASDNALEN-VD-GVANLPRLQELLLCNNR-LQQSAAIQPLVSCPRLVLLNLQGNSLCQE 548 (567)
T ss_dssp CCGGGGGCTTCCEEECCSSCCCC-CG-GGTTCSSCCEEECCSSC-CCSSSTTGGGGGCTTCCEEECTTSGGGGS
T ss_pred cchhhhcCCCCCEEECCCCCCCC-Cc-ccCCCCCCcEEECCCCC-CCCCCCcHHHhcCCCCCEEEecCCcCCCC
Confidence 45555556666666666665553 34 45555555555555555 33333 55555555555555555555443
|
| >4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=99.66 E-value=7.4e-16 Score=140.97 Aligned_cols=132 Identities=17% Similarity=0.258 Sum_probs=62.4
Q ss_pred hhcCCCCCEEEccCCcccccCCccccCCCCccEEECcCCCcCccccchhhcCCCCCCEEecccccCCcccchhhhCCCCC
Q 037325 260 LFNITSLLCLDLGSNDLQGDIPDGFASLNSLQELDLSGNSFLGGQLSRNLGKLCNLRTMILSRNNISSEVSDFLDGLSEC 339 (598)
Q Consensus 260 l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~~ 339 (598)
+..+++|++|++++|.+. .+..+..+++|++|++++|. +.+..+..+..+++|++|++++|.+++..+..+..++
T Consensus 62 l~~l~~L~~L~l~~n~~~--~~~~l~~l~~L~~L~l~~n~-l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~l~~l~-- 136 (197)
T 4ezg_A 62 IEYAHNIKDLTINNIHAT--NYNPISGLSNLERLRIMGKD-VTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLP-- 136 (197)
T ss_dssp GGGCTTCSEEEEESCCCS--CCGGGTTCTTCCEEEEECTT-CBGGGSCCCTTCTTCCEEECCSSBCBGGGHHHHTTCS--
T ss_pred HhcCCCCCEEEccCCCCC--cchhhhcCCCCCEEEeECCc-cCcccChhhcCCCCCCEEEecCCccCcHhHHHHhhCC--
Confidence 334444444444444332 11234444444444444444 3333334444445555555555555444444444444
Q ss_pred CCCCCccEEEccCcc-ccccCccccCCCCCCCEEEccCCcCCccchhhccCCCCCCEEeCcCCcCC
Q 037325 340 TNSILLEKLELRFNQ-FTGILPISLGSLKNLRHLVLWQNSFLGSIPPSIGNLTLLKELYLASNQMN 404 (598)
Q Consensus 340 ~~~~~L~~L~Ls~n~-l~~~~~~~l~~l~~L~~L~ls~n~l~~~~~~~l~~l~~L~~L~l~~n~l~ 404 (598)
+|++|++++|. ++ .++ .+..+++|+.|++++|++++ ++ .+..+++|++|++++|++.
T Consensus 137 ----~L~~L~L~~n~~i~-~~~-~l~~l~~L~~L~l~~n~i~~-~~-~l~~l~~L~~L~l~~N~i~ 194 (197)
T 4ezg_A 137 ----KVNSIDLSYNGAIT-DIM-PLKTLPELKSLNIQFDGVHD-YR-GIEDFPKLNQLYAFSQTIG 194 (197)
T ss_dssp ----SCCEEECCSCTBCC-CCG-GGGGCSSCCEEECTTBCCCC-CT-TGGGCSSCCEEEECBC---
T ss_pred ----CCCEEEccCCCCcc-ccH-hhcCCCCCCEEECCCCCCcC-hH-HhccCCCCCEEEeeCcccC
Confidence 45555555554 33 233 45555666666666666553 22 4556666666666666554
|
| >1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7 | Back alignment and structure |
|---|
Probab=99.66 E-value=6.8e-16 Score=140.43 Aligned_cols=90 Identities=22% Similarity=0.313 Sum_probs=58.4
Q ss_pred CcCCcEEEccCCcccccCCchhhcccCCCCCccccCCCCeEeCcCCccccccchhccCCCCCCEEECCCCcCccccchhc
Q 037325 487 SFNVTKLYLRDNSFSGLIPNDIGQNLPFLTDLGNLKQLITLVISNNNLSGEIPLLFSNISFLYILDMSNNSLSGSTPESI 566 (598)
Q Consensus 487 ~~~L~~L~ls~n~l~~~~p~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~l 566 (598)
+++|++|++++|++++..|..+.. +++|+.|+|++|++++..|..|.++++|++|+|++|++++..|..+
T Consensus 53 l~~L~~L~Ls~N~l~~~~~~~~~~----------l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~ 122 (192)
T 1w8a_A 53 LPHLVKLELKRNQLTGIEPNAFEG----------ASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSF 122 (192)
T ss_dssp CTTCCEEECCSSCCCCBCTTTTTT----------CTTCCEEECCSCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSS
T ss_pred CCCCCEEECCCCCCCCcCHhHcCC----------cccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHh
Confidence 456666666666666555555554 6666666666666666556666666666666666666666666666
Q ss_pred cCCCCCCEEEccCCCCcccC
Q 037325 567 GSLRTVKFLVLRNNYLSGKL 586 (598)
Q Consensus 567 ~~l~~L~~L~l~~n~l~g~~ 586 (598)
..+++|++|++++|++.+..
T Consensus 123 ~~l~~L~~L~L~~N~l~c~c 142 (192)
T 1w8a_A 123 EHLNSLTSLNLASNPFNCNC 142 (192)
T ss_dssp TTCTTCCEEECTTCCBCCSG
T ss_pred hcCCCCCEEEeCCCCccCcC
Confidence 66666666666666666543
|
| >1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=99.66 E-value=2.1e-16 Score=151.40 Aligned_cols=150 Identities=21% Similarity=0.228 Sum_probs=80.0
Q ss_pred cccCCCCCCEEeCCCCCCCCCCcchhccCCCCCCEEECcCCCCCcccchhccCCCCCCEEEccCCCCCCCccChhhhcCC
Q 037325 108 SLLQLKDLEYLDLSMNNFTGFQVPEFIGSLKELRYLNLSGSFFSGTIPQTLGNLSNLLYLDLNNFLDQSNQIDLEWLSGL 187 (598)
Q Consensus 108 ~l~~l~~L~~L~Ls~n~l~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~~l 187 (598)
.+..+++|++|++++|.++. ++ .+..+++|++|++++|++++ +|. +..+++|++|++++|.+..... +..
T Consensus 36 ~~~~l~~L~~L~l~~n~i~~--l~-~l~~l~~L~~L~L~~N~i~~-~~~-l~~l~~L~~L~L~~N~l~~l~~----~~~- 105 (263)
T 1xeu_A 36 SQKELSGVQNFNGDNSNIQS--LA-GMQFFTNLKELHLSHNQISD-LSP-LKDLTKLEELSVNRNRLKNLNG----IPS- 105 (263)
T ss_dssp CHHHHTTCSEEECTTSCCCC--CT-TGGGCTTCCEEECCSSCCCC-CGG-GTTCSSCCEEECCSSCCSCCTT----CCC-
T ss_pred chhhcCcCcEEECcCCCccc--ch-HHhhCCCCCEEECCCCccCC-Chh-hccCCCCCEEECCCCccCCcCc----ccc-
Confidence 35566667777777776663 34 45666677777777776663 333 6666666666666665543221 122
Q ss_pred CCCcEEEcCCCCCCCCcccchHhhhcCCCCCEEEcCCCCCCCCCCCCCcCCCCCccEEEccCCCCCCCcchhhhcCCCCC
Q 037325 188 SSLVYFNLGGADLSKAGAYWLEVFNKLHSFVELHLPNCNLPSLPLSFPSLNFASLQVLDLSNNDFNSTTPHWLFNITSLL 267 (598)
Q Consensus 188 ~~L~~L~l~~n~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~ 267 (598)
++|++|++++|.+.+. ..+..+++|++|++++|.+++.+ .+..+++|++|++++|++++. ..+..+++|+
T Consensus 106 ~~L~~L~L~~N~l~~~-----~~l~~l~~L~~L~Ls~N~i~~~~---~l~~l~~L~~L~L~~N~i~~~--~~l~~l~~L~ 175 (263)
T 1xeu_A 106 ACLSRLFLDNNELRDT-----DSLIHLKNLEILSIRNNKLKSIV---MLGFLSKLEVLDLHGNEITNT--GGLTRLKKVN 175 (263)
T ss_dssp SSCCEEECCSSCCSBS-----GGGTTCTTCCEEECTTSCCCBCG---GGGGCTTCCEEECTTSCCCBC--TTSTTCCCCC
T ss_pred CcccEEEccCCccCCC-----hhhcCcccccEEECCCCcCCCCh---HHccCCCCCEEECCCCcCcch--HHhccCCCCC
Confidence 5555555555555543 13444555555555555554442 233444555555555554443 3344444455
Q ss_pred EEEccCCccc
Q 037325 268 CLDLGSNDLQ 277 (598)
Q Consensus 268 ~L~l~~n~l~ 277 (598)
.|++++|.+.
T Consensus 176 ~L~l~~N~~~ 185 (263)
T 1xeu_A 176 WIDLTGQKCV 185 (263)
T ss_dssp EEEEEEEEEE
T ss_pred EEeCCCCccc
Confidence 5555544444
|
| >1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=99.66 E-value=2.6e-16 Score=150.88 Aligned_cols=170 Identities=23% Similarity=0.291 Sum_probs=110.1
Q ss_pred CCCCCCEEEccCCcCCccchhhccCCCCCCEEeCcCCcCCcccCCCchhhhcCCCCCCEEEccCccCccccchHHHhcCC
Q 037325 365 SLKNLRHLVLWQNSFLGSIPPSIGNLTLLKELYLASNQMNGQKISDSYQHLKNQTELRTLVLNKARISDTISDWFWQLSL 444 (598)
Q Consensus 365 ~l~~L~~L~ls~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~ 444 (598)
.+.++..++++++.+++. + .+..+++|++|++++|.++.. + .+..+++|+.|++++|++++..+ + ..++
T Consensus 17 ~l~~l~~l~l~~~~i~~~-~-~~~~l~~L~~L~l~~n~i~~l--~----~l~~l~~L~~L~L~~N~i~~~~~--l-~~l~ 85 (263)
T 1xeu_A 17 GLANAVKQNLGKQSVTDL-V-SQKELSGVQNFNGDNSNIQSL--A----GMQFFTNLKELHLSHNQISDLSP--L-KDLT 85 (263)
T ss_dssp HHHHHHHHHHTCSCTTSE-E-CHHHHTTCSEEECTTSCCCCC--T----TGGGCTTCCEEECCSSCCCCCGG--G-TTCS
T ss_pred HHHHHHHHHhcCCCcccc-c-chhhcCcCcEEECcCCCcccc--h----HHhhCCCCCEEECCCCccCCChh--h-ccCC
Confidence 355677788888888744 3 477889999999999988753 2 36778999999999999987665 3 3478
Q ss_pred CCCEEEccCCcCcccCCCCcccCCCCEEEcccCcCcccCCCCCcCCcEEEccCCcccccCCchhhcccCCCCCccccCCC
Q 037325 445 TLDELDVAYNELRGRVPNSLGFNFPAKVDLSFNNFEGRLLLWSFNVTKLYLRDNSFSGLIPNDIGQNLPFLTDLGNLKQL 524 (598)
Q Consensus 445 ~L~~L~ls~n~~~~~~p~~~~~~~L~~l~ls~n~l~~~~~~~~~~L~~L~ls~n~l~~~~p~~~~~~~~~~~~~~~l~~L 524 (598)
+|++|++++|++++. |.... ++|+.|++++|++++ ++ .+.. +++|
T Consensus 86 ~L~~L~L~~N~l~~l-~~~~~----------------------~~L~~L~L~~N~l~~-~~-~l~~----------l~~L 130 (263)
T 1xeu_A 86 KLEELSVNRNRLKNL-NGIPS----------------------ACLSRLFLDNNELRD-TD-SLIH----------LKNL 130 (263)
T ss_dssp SCCEEECCSSCCSCC-TTCCC----------------------SSCCEEECCSSCCSB-SG-GGTT----------CTTC
T ss_pred CCCEEECCCCccCCc-Ccccc----------------------CcccEEEccCCccCC-Ch-hhcC----------cccc
Confidence 899999999988753 22111 345555555555553 22 2333 5556
Q ss_pred CeEeCcCCccccccchhccCCCCCCEEECCCCcCccccchhccCCCCCCEEEccCCCCcc
Q 037325 525 ITLVISNNNLSGEIPLLFSNISFLYILDMSNNSLSGSTPESIGSLRTVKFLVLRNNYLSG 584 (598)
Q Consensus 525 ~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~l~~l~~L~~L~l~~n~l~g 584 (598)
+.|++++|++++ +| .++.+++|++|++++|++++. ..+..+++|+.|++++|++++
T Consensus 131 ~~L~Ls~N~i~~-~~-~l~~l~~L~~L~L~~N~i~~~--~~l~~l~~L~~L~l~~N~~~~ 186 (263)
T 1xeu_A 131 EILSIRNNKLKS-IV-MLGFLSKLEVLDLHGNEITNT--GGLTRLKKVNWIDLTGQKCVN 186 (263)
T ss_dssp CEEECTTSCCCB-CG-GGGGCTTCCEEECTTSCCCBC--TTSTTCCCCCEEEEEEEEEEC
T ss_pred cEEECCCCcCCC-Ch-HHccCCCCCEEECCCCcCcch--HHhccCCCCCEEeCCCCcccC
Confidence 666666666653 23 355556666666666666543 445555666666666665553
|
| >3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} | Back alignment and structure |
|---|
Probab=99.65 E-value=3e-15 Score=140.28 Aligned_cols=135 Identities=30% Similarity=0.329 Sum_probs=77.2
Q ss_pred CCCCEEEccCCcccccCCccccCCCCccEEECcCCCcCccccchhhcCCCCCCEEecccccCCcccchhhhCCCCCCCCC
Q 037325 264 TSLLCLDLGSNDLQGDIPDGFASLNSLQELDLSGNSFLGGQLSRNLGKLCNLRTMILSRNNISSEVSDFLDGLSECTNSI 343 (598)
Q Consensus 264 ~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~~~~~~ 343 (598)
++|++|++++|.+++..+..+..+++|++|++++|. +....+..+..+++|++|++++|++++..+..+..++
T Consensus 40 ~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~-l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~------ 112 (229)
T 3e6j_A 40 TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQ-LGALPVGVFDSLTQLTVLDLGTNQLTVLPSAVFDRLV------ 112 (229)
T ss_dssp TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCT------
T ss_pred CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCC-CCCcChhhcccCCCcCEEECCCCcCCccChhHhCcch------
Confidence 344444454444444444444455555555555555 2333333445555555555555555555444455555
Q ss_pred CccEEEccCccccccCccccCCCCCCCEEEccCCcCCccchhhccCCCCCCEEeCcCCcCCcc
Q 037325 344 LLEKLELRFNQFTGILPISLGSLKNLRHLVLWQNSFLGSIPPSIGNLTLLKELYLASNQMNGQ 406 (598)
Q Consensus 344 ~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~ls~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~ 406 (598)
+|++|++++|.++ .+|..+..+++|+.|++++|++.+..+..+..+++|+.|++++|.+.+.
T Consensus 113 ~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~ 174 (229)
T 3e6j_A 113 HLKELFMCCNKLT-ELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNPWDCE 174 (229)
T ss_dssp TCCEEECCSSCCC-SCCTTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCBCTT
T ss_pred hhCeEeccCCccc-ccCcccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCCccCC
Confidence 5666666666666 4555666667777777777777655555566677777777777766644
|
| >4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C} | Back alignment and structure |
|---|
Probab=99.65 E-value=3e-17 Score=179.82 Aligned_cols=260 Identities=16% Similarity=0.114 Sum_probs=127.9
Q ss_pred CCHHHHHHHHHHHhcCC-CCCCCCCCCC--CCCCCCcccEEecCCCCcEEEEEcCCCCCCCCCCcccCCCCCcceecCcc
Q 037325 32 CQEAERKALLQFKQSLR-DPSGQLSSWV--GEDCCSWSGVSCNNRTASVIKLNLNNPFRDSFGSFEDDAGHELGGEISPS 108 (598)
Q Consensus 32 ~~~~~~~~l~~~~~~~~-~~~~~~~~W~--~~~~c~w~gv~c~~~~~~v~~L~L~~~~~~~~~~~~~~~~~~l~~~~~~~ 108 (598)
....++++++++..+.. .....-..|. ....+.|.++.++. .+++.++|.+ +++... +..
T Consensus 129 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~--~~~~~l~L~~--------------n~~~~~-~~~ 191 (727)
T 4b8c_D 129 LVDCTKQALMEMADTLTDSKTAKKQQPTGDSTPSGTATNSAVST--PLTPKIELFA--------------NGKDEA-NQA 191 (727)
T ss_dssp ---CCCHHHHHHHHHHHHHHTTC---------------------------------------------------------
T ss_pred ccccchhhhhhhhhhcccccCcccCCCcCCCCccccCCCceecC--CccceEEeeC--------------CCCCcc-hhh
Confidence 44567789998886652 1222334573 34567898888864 6899999976 455442 333
Q ss_pred ccCCCCCCEE-----eCCCCCCCCCCcchhccCCCCCCEEECcCCCCCcccchhccCCCCCCEEEccCCCCCCCccChhh
Q 037325 109 LLQLKDLEYL-----DLSMNNFTGFQVPEFIGSLKELRYLNLSGSFFSGTIPQTLGNLSNLLYLDLNNFLDQSNQIDLEW 183 (598)
Q Consensus 109 l~~l~~L~~L-----~Ls~n~l~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~~~~~~~~~~~ 183 (598)
+.....|+.+ +++.|.+. ..+..+..++.|++|+|++|.+. .+|..+..+++|++|+|++|.+... ...
T Consensus 192 ~l~~l~Ls~~~i~~~~~~~n~~~--~~~~~~~~l~~L~~L~Ls~n~l~-~l~~~~~~l~~L~~L~Ls~N~l~~l---p~~ 265 (727)
T 4b8c_D 192 LLQHKKLSQYSIDEDDDIENRMV--MPKDSKYDDQLWHALDLSNLQIF-NISANIFKYDFLTRLYLNGNSLTEL---PAE 265 (727)
T ss_dssp --------------------------------CCCCCCEEECTTSCCS-CCCGGGGGCCSCSCCBCTTSCCSCC---CGG
T ss_pred HhhcCccCcccccCcccccccee--cChhhhccCCCCcEEECCCCCCC-CCChhhcCCCCCCEEEeeCCcCccc---Chh
Confidence 3222233332 22333333 25677888999999999999998 7888888999999999999887622 244
Q ss_pred hcCCCCCcEEEcCCCCCCCCcccchHhhhcCCCCCEEEcCCCCCCCCCCCCCcCCCCCccEEEccCCCCCCCcchhhhcC
Q 037325 184 LSGLSSLVYFNLGGADLSKAGAYWLEVFNKLHSFVELHLPNCNLPSLPLSFPSLNFASLQVLDLSNNDFNSTTPHWLFNI 263 (598)
Q Consensus 184 ~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l 263 (598)
+.++++|++|+|++|.++.. +..+..+++|++|++++|.++.++. .+..+++|++|+|++|.+++.+|..+..+
T Consensus 266 ~~~l~~L~~L~Ls~N~l~~l----p~~~~~l~~L~~L~L~~N~l~~lp~--~~~~l~~L~~L~L~~N~l~~~~p~~~~~~ 339 (727)
T 4b8c_D 266 IKNLSNLRVLDLSHNRLTSL----PAELGSCFQLKYFYFFDNMVTTLPW--EFGNLCNLQFLGVEGNPLEKQFLKILTEK 339 (727)
T ss_dssp GGGGTTCCEEECTTSCCSSC----CSSGGGGTTCSEEECCSSCCCCCCS--STTSCTTCCCEECTTSCCCSHHHHHHHHH
T ss_pred hhCCCCCCEEeCcCCcCCcc----ChhhcCCCCCCEEECCCCCCCccCh--hhhcCCCccEEeCCCCccCCCChHHHhhc
Confidence 78899999999999999854 5678899999999999999987765 37889999999999999999888887654
Q ss_pred C-CCCEEEccCCcccccCCccccCCCCccEEECcCCCc-------CccccchhhcCCCCCCEEecccccCC
Q 037325 264 T-SLLCLDLGSNDLQGDIPDGFASLNSLQELDLSGNSF-------LGGQLSRNLGKLCNLRTMILSRNNIS 326 (598)
Q Consensus 264 ~-~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~-------~~~~~~~~l~~l~~L~~L~l~~n~l~ 326 (598)
. ....+++++|.+++.+|.. |+.|+++.|.. +.+..+..+..+..+....++.|-+.
T Consensus 340 ~~~~~~l~l~~N~l~~~~p~~------l~~l~l~~n~~~~~~~~~l~~~~~~~~~~l~~~~~~~ls~Nil~ 404 (727)
T 4b8c_D 340 SVTGLIFYLRDNRPEIPLPHE------RRFIEINTDGEPQREYDSLQQSTEHLATDLAKRTFTVLSYNTLC 404 (727)
T ss_dssp HHHHHHHHHHHCCCCCCCCCC-----------------------------------------------CCC
T ss_pred chhhhHHhhccCcccCcCccc------cceeEeecccccccccCCccccccchhhcccccceeeeeccccc
Confidence 3 2234778899998877753 45556665510 11222223344445555556666543
|
| >2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A | Back alignment and structure |
|---|
Probab=99.61 E-value=5.3e-15 Score=131.50 Aligned_cols=135 Identities=18% Similarity=0.072 Sum_probs=96.0
Q ss_pred CCCEEEccCCcCc-ccCCCCcccC-CCCEEEcccCcCccc-CCCCCcCCcEEEccCCcccccCCchhhcccCCCCCcccc
Q 037325 445 TLDELDVAYNELR-GRVPNSLGFN-FPAKVDLSFNNFEGR-LLLWSFNVTKLYLRDNSFSGLIPNDIGQNLPFLTDLGNL 521 (598)
Q Consensus 445 ~L~~L~ls~n~~~-~~~p~~~~~~-~L~~l~ls~n~l~~~-~~~~~~~L~~L~ls~n~l~~~~p~~~~~~~~~~~~~~~l 521 (598)
+|++|++++|.++ +.+|..+... .|+.|++++|.+++. ....+++|++|++++|++++.+|..+.. +
T Consensus 25 ~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~----------l 94 (168)
T 2ell_A 25 AVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISVSNLPKLPKLKKLELSENRIFGGLDMLAEK----------L 94 (168)
T ss_dssp SCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCCSSCCCCSSCCEEEEESCCCCSCCCHHHHH----------C
T ss_pred cCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCChhhhccCCCCCEEECcCCcCchHHHHHHhh----------C
Confidence 3444444444443 3333333222 444444444444432 1123678999999999999778877766 8
Q ss_pred CCCCeEeCcCCccccc-cchhccCCCCCCEEECCCCcCccccc---hhccCCCCCCEEEccCCCCcccCCcCc
Q 037325 522 KQLITLVISNNNLSGE-IPLLFSNISFLYILDMSNNSLSGSTP---ESIGSLRTVKFLVLRNNYLSGKLPLSL 590 (598)
Q Consensus 522 ~~L~~L~Ls~N~l~~~-~p~~~~~l~~L~~L~ls~N~l~~~~p---~~l~~l~~L~~L~l~~n~l~g~~P~~~ 590 (598)
++|+.|++++|.+++. .+..+.++++|++|++++|++++..+ ..+..+++|++|++++|.+. .+|..-
T Consensus 95 ~~L~~L~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~-~~~~~~ 166 (168)
T 2ell_A 95 PNLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDREDQ-EAPDSD 166 (168)
T ss_dssp TTCCEEECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTSC-BCCSSS
T ss_pred CCCCEEeccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCChh-hccccc
Confidence 9999999999999954 23789999999999999999996555 48899999999999999998 677653
|
| >4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C} | Back alignment and structure |
|---|
Probab=99.58 E-value=6.1e-16 Score=169.52 Aligned_cols=92 Identities=26% Similarity=0.396 Sum_probs=43.9
Q ss_pred CCCCccEEEccCCCCCCCcchhhhcCCCCCEEEccCCcccccCCccccCCCCccEEECcCCCcCccccchhhcCCCCCCE
Q 037325 238 NFASLQVLDLSNNDFNSTTPHWLFNITSLLCLDLGSNDLQGDIPDGFASLNSLQELDLSGNSFLGGQLSRNLGKLCNLRT 317 (598)
Q Consensus 238 ~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~l~~l~~L~~ 317 (598)
.+++|++|+|++|.++ .+|..+.++++|++|+|++|.++ .+|..++.+++|++|+|++|.+ ..+|..|+.+++|++
T Consensus 245 ~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l--~~lp~~~~~l~~L~~ 320 (727)
T 4b8c_D 245 KYDFLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLT-SLPAELGSCFQLKYFYFFDNMV--TTLPWEFGNLCNLQF 320 (727)
T ss_dssp GCCSCSCCBCTTSCCS-CCCGGGGGGTTCCEEECTTSCCS-SCCSSGGGGTTCSEEECCSSCC--CCCCSSTTSCTTCCC
T ss_pred CCCCCCEEEeeCCcCc-ccChhhhCCCCCCEEeCcCCcCC-ccChhhcCCCCCCEEECCCCCC--CccChhhhcCCCccE
Confidence 3444444444444444 34444444455555555555544 3444444445555555555542 234444445555555
Q ss_pred EecccccCCcccchhh
Q 037325 318 MILSRNNISSEVSDFL 333 (598)
Q Consensus 318 L~l~~n~l~~~~~~~~ 333 (598)
|+|++|.+++..|..+
T Consensus 321 L~L~~N~l~~~~p~~~ 336 (727)
T 4b8c_D 321 LGVEGNPLEKQFLKIL 336 (727)
T ss_dssp EECTTSCCCSHHHHHH
T ss_pred EeCCCCccCCCChHHH
Confidence 5555555554444443
|
| >3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=99.57 E-value=8.9e-16 Score=152.60 Aligned_cols=285 Identities=13% Similarity=0.086 Sum_probs=167.0
Q ss_pred CCCCCEEeCCCCCCCCCCcchhccC-CCCCCEEECcCCCCCcccchhccCCCCCCEEEccCCCCCCCccChhhhcC----
Q 037325 112 LKDLEYLDLSMNNFTGFQVPEFIGS-LKELRYLNLSGSFFSGTIPQTLGNLSNLLYLDLNNFLDQSNQIDLEWLSG---- 186 (598)
Q Consensus 112 l~~L~~L~Ls~n~l~~~~~p~~~~~-l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~~---- 186 (598)
+.+++.|.++++ +....+ ..+.. +++|++|||++|++. .....-+.++.++.+.+..+ ......|.+
T Consensus 24 ~~~l~~L~l~g~-i~~~~~-~~l~~~l~~L~~LdLs~n~i~-~~~~~~~~~~~~~~~~~~~~-----~I~~~aF~~~~~~ 95 (329)
T 3sb4_A 24 ANSITHLTLTGK-LNAEDF-RHLRDEFPSLKVLDISNAEIK-MYSGKAGTYPNGKFYIYMAN-----FVPAYAFSNVVNG 95 (329)
T ss_dssp HHHCSEEEEEEE-ECHHHH-HHHHHSCTTCCEEEEEEEEEC-CEEESSSSSGGGCCEEECTT-----EECTTTTEEEETT
T ss_pred hCceeEEEEecc-ccHHHH-HHHHHhhccCeEEecCcceeE-EecCcccccccccccccccc-----ccCHHHhcccccc
Confidence 556777777653 111111 12223 677888888877766 11111112222333443333 122234566
Q ss_pred ----CCCCcEEEcCCCCCCCCcccchHhhhcCCCCCEEEcCCCCCCCCCCCCCcCCCCCccEEEccCCC----CCCCcch
Q 037325 187 ----LSSLVYFNLGGADLSKAGAYWLEVFNKLHSFVELHLPNCNLPSLPLSFPSLNFASLQVLDLSNND----FNSTTPH 258 (598)
Q Consensus 187 ----l~~L~~L~l~~n~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~L~~L~L~~n~----l~~~~~~ 258 (598)
+++|+.+++.+ .+..+. ...|.+|++|+++++.+|.+..++. ..+..+.++..+....+. .......
T Consensus 96 ~~~g~~~L~~l~L~~-~i~~I~---~~aF~~~~~L~~l~l~~n~i~~i~~-~aF~~~~~l~~l~~~~~~~~~~~~~i~~~ 170 (329)
T 3sb4_A 96 VTKGKQTLEKVILSE-KIKNIE---DAAFKGCDNLKICQIRKKTAPNLLP-EALADSVTAIFIPLGSSDAYRFKNRWEHF 170 (329)
T ss_dssp EEEECTTCCC-CBCT-TCCEEC---TTTTTTCTTCCEEEBCCSSCCEECT-TSSCTTTCEEEECTTCTHHHHTSTTTTTS
T ss_pred cccccCCCcEEECCc-cccchh---HHHhhcCcccceEEcCCCCccccch-hhhcCCCceEEecCcchhhhhcccccccc
Confidence 77777777777 666554 4677788888888888887777666 556666667666665421 1112223
Q ss_pred hhhcCCCCC-EEEccCCcccccCCccc----cCCCCccEEECcCCCcCccccchhhcCCCCCCEEecccccCCcccchhh
Q 037325 259 WLFNITSLL-CLDLGSNDLQGDIPDGF----ASLNSLQELDLSGNSFLGGQLSRNLGKLCNLRTMILSRNNISSEVSDFL 333 (598)
Q Consensus 259 ~l~~l~~L~-~L~l~~n~l~~~~~~~l----~~l~~L~~L~l~~n~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~ 333 (598)
.+.++..|+ .+.+.... .++..+ ....+++.+.+.++- ...........+++|+.+++.+|+++......|
T Consensus 171 ~f~~~~~L~~~i~~~~~~---~l~~~~~~~~~~~~~~~~l~~~~~l-~~~~~~~l~~~~~~L~~l~L~~n~i~~I~~~aF 246 (329)
T 3sb4_A 171 AFIEGEPLETTIQVGAMG---KLEDEIMKAGLQPRDINFLTIEGKL-DNADFKLIRDYMPNLVSLDISKTNATTIPDFTF 246 (329)
T ss_dssp CEEESCCCEEEEEECTTC---CHHHHHHHTTCCGGGCSEEEEEECC-CHHHHHHHHHHCTTCCEEECTTBCCCEECTTTT
T ss_pred ccccccccceeEEecCCC---cHHHHHhhcccCccccceEEEeeee-cHHHHHHHHHhcCCCeEEECCCCCcceecHhhh
Confidence 344555665 44443321 122111 124556666666553 222222222346788888888877777777777
Q ss_pred hCCCCCCCCCCccEEEccCccccccCccccCCCCCCC-EEEccCCcCCccchhhccCCCCCCEEeCcCCcCCcccCCCch
Q 037325 334 DGLSECTNSILLEKLELRFNQFTGILPISLGSLKNLR-HLVLWQNSFLGSIPPSIGNLTLLKELYLASNQMNGQKISDSY 412 (598)
Q Consensus 334 ~~l~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~l~~L~-~L~ls~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~ 412 (598)
..+. +|+++++.+| ++...+..|.++++|+ .+++.+ .++...+.+|.++++|+.+++++|.++... +
T Consensus 247 ~~~~------~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~l~l~~n~i~~I~-~--- 314 (329)
T 3sb4_A 247 AQKK------YLLKIKLPHN-LKTIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNLRYVLATGDKITTLG-D--- 314 (329)
T ss_dssp TTCT------TCCEEECCTT-CCEECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTTEEEEEECSSCCCEEC-T---
T ss_pred hCCC------CCCEEECCcc-cceehHHHhhCChhccEEEEEcc-cceEEchhhhhCCccCCEEEeCCCccCccc-h---
Confidence 7766 7888888776 6656666778888888 888877 566555667888888888888877776554 3
Q ss_pred hhhcCCCCCCEEE
Q 037325 413 QHLKNQTELRTLV 425 (598)
Q Consensus 413 ~~l~~~~~L~~L~ 425 (598)
..+.++++|+.++
T Consensus 315 ~aF~~~~~L~~ly 327 (329)
T 3sb4_A 315 ELFGNGVPSKLIY 327 (329)
T ss_dssp TTTCTTCCCCEEE
T ss_pred hhhcCCcchhhhc
Confidence 2466777777765
|
| >3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=99.56 E-value=2.2e-15 Score=149.68 Aligned_cols=288 Identities=13% Similarity=0.115 Sum_probs=153.6
Q ss_pred CCCCCEEECcCCCCCcccchhccC-CCCCCEEEccCCCCCCCccChhhhcCCCCCcEEEcCCCCCCCCcccchHhhhc--
Q 037325 137 LKELRYLNLSGSFFSGTIPQTLGN-LSNLLYLDLNNFLDQSNQIDLEWLSGLSSLVYFNLGGADLSKAGAYWLEVFNK-- 213 (598)
Q Consensus 137 l~~L~~L~L~~n~l~~~~p~~l~~-l~~L~~L~L~~n~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~-- 213 (598)
+++++.|.++++ +...-...+.. +++|++|||++|.+........ .++.++.+.+..+.+. ...|.+
T Consensus 24 ~~~l~~L~l~g~-i~~~~~~~l~~~l~~L~~LdLs~n~i~~~~~~~~---~~~~~~~~~~~~~~I~------~~aF~~~~ 93 (329)
T 3sb4_A 24 ANSITHLTLTGK-LNAEDFRHLRDEFPSLKVLDISNAEIKMYSGKAG---TYPNGKFYIYMANFVP------AYAFSNVV 93 (329)
T ss_dssp HHHCSEEEEEEE-ECHHHHHHHHHSCTTCCEEEEEEEEECCEEESSS---SSGGGCCEEECTTEEC------TTTTEEEE
T ss_pred hCceeEEEEecc-ccHHHHHHHHHhhccCeEEecCcceeEEecCccc---cccccccccccccccC------HHHhcccc
Confidence 567888888764 22111223333 7778888888776541111111 1112344444444332 234555
Q ss_pred ------CCCCCEEEcCCCCCCCCCCCCCcCCCCCccEEEccCCCCCCCcchhhhcCCCCCEEEccCCcc----cccCCcc
Q 037325 214 ------LHSFVELHLPNCNLPSLPLSFPSLNFASLQVLDLSNNDFNSTTPHWLFNITSLLCLDLGSNDL----QGDIPDG 283 (598)
Q Consensus 214 ------l~~L~~L~l~~~~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l----~~~~~~~ 283 (598)
+++|+++++.+ .++.++. ..+..|++|+.+++..|.+....+..|..+.++..+....+.. .......
T Consensus 94 ~~~~~g~~~L~~l~L~~-~i~~I~~-~aF~~~~~L~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~~~ 171 (329)
T 3sb4_A 94 NGVTKGKQTLEKVILSE-KIKNIED-AAFKGCDNLKICQIRKKTAPNLLPEALADSVTAIFIPLGSSDAYRFKNRWEHFA 171 (329)
T ss_dssp TTEEEECTTCCC-CBCT-TCCEECT-TTTTTCTTCCEEEBCCSSCCEECTTSSCTTTCEEEECTTCTHHHHTSTTTTTSC
T ss_pred cccccccCCCcEEECCc-cccchhH-HHhhcCcccceEEcCCCCccccchhhhcCCCceEEecCcchhhhhccccccccc
Confidence 77777777777 6666655 5666777777777777776655556666666555555444211 1111222
Q ss_pred ccCCCCcc-EEECcCCCcCccccchhhcCCCCCCEEecccccCCcccchhh-hCCCCCCCCCCccEEEccCccccccCcc
Q 037325 284 FASLNSLQ-ELDLSGNSFLGGQLSRNLGKLCNLRTMILSRNNISSEVSDFL-DGLSECTNSILLEKLELRFNQFTGILPI 361 (598)
Q Consensus 284 l~~l~~L~-~L~l~~n~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~-~~l~~~~~~~~L~~L~Ls~n~l~~~~~~ 361 (598)
|..+..|+ .+.+.........+...-....+++.+.+.++- .......+ ..++ +|+++++++|+++...+.
T Consensus 172 f~~~~~L~~~i~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~l-~~~~~~~l~~~~~------~L~~l~L~~n~i~~I~~~ 244 (329)
T 3sb4_A 172 FIEGEPLETTIQVGAMGKLEDEIMKAGLQPRDINFLTIEGKL-DNADFKLIRDYMP------NLVSLDISKTNATTIPDF 244 (329)
T ss_dssp EEESCCCEEEEEECTTCCHHHHHHHTTCCGGGCSEEEEEECC-CHHHHHHHHHHCT------TCCEEECTTBCCCEECTT
T ss_pred cccccccceeEEecCCCcHHHHHhhcccCccccceEEEeeee-cHHHHHHHHHhcC------CCeEEECCCCCcceecHh
Confidence 33444454 343333221111111111123345555554431 11111111 1133 677777777777765556
Q ss_pred ccCCCCCCCEEEccCCcCCccchhhccCCCCCC-EEeCcCCcCCcccCCCchhhhcCCCCCCEEEccCccCccccchHHH
Q 037325 362 SLGSLKNLRHLVLWQNSFLGSIPPSIGNLTLLK-ELYLASNQMNGQKISDSYQHLKNQTELRTLVLNKARISDTISDWFW 440 (598)
Q Consensus 362 ~l~~l~~L~~L~ls~n~l~~~~~~~l~~l~~L~-~L~l~~n~l~~~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~ 440 (598)
.|.++++|+.+++.+| +....+.+|.++++|+ .+++.+ .++... + ..+.+|++|+.+++++|.+....+..|.
T Consensus 245 aF~~~~~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~~I~-~---~aF~~c~~L~~l~l~~n~i~~I~~~aF~ 318 (329)
T 3sb4_A 245 TFAQKKYLLKIKLPHN-LKTIGQRVFSNCGRLAGTLELPA-SVTAIE-F---GAFMGCDNLRYVLATGDKITTLGDELFG 318 (329)
T ss_dssp TTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEEECT-TCCEEC-T---TTTTTCTTEEEEEECSSCCCEECTTTTC
T ss_pred hhhCCCCCCEEECCcc-cceehHHHhhCChhccEEEEEcc-cceEEc-h---hhhhCCccCCEEEeCCCccCccchhhhc
Confidence 6777777777777776 5544555677777777 777766 444332 2 2466677777777777777655555554
Q ss_pred hcCCCCCEEE
Q 037325 441 QLSLTLDELD 450 (598)
Q Consensus 441 ~~~~~L~~L~ 450 (598)
. +++|+.++
T Consensus 319 ~-~~~L~~ly 327 (329)
T 3sb4_A 319 N-GVPSKLIY 327 (329)
T ss_dssp T-TCCCCEEE
T ss_pred C-Ccchhhhc
Confidence 4 56666654
|
| >1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7 | Back alignment and structure |
|---|
Probab=99.56 E-value=2e-14 Score=130.68 Aligned_cols=117 Identities=23% Similarity=0.324 Sum_probs=98.2
Q ss_pred CEEEcccCcCcccCCCC-CcCCcEEEccCCcccccCCch-hhcccCCCCCccccCCCCeEeCcCCccccccchhccCCCC
Q 037325 470 AKVDLSFNNFEGRLLLW-SFNVTKLYLRDNSFSGLIPND-IGQNLPFLTDLGNLKQLITLVISNNNLSGEIPLLFSNISF 547 (598)
Q Consensus 470 ~~l~ls~n~l~~~~~~~-~~~L~~L~ls~n~l~~~~p~~-~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~ 547 (598)
+.+++++|++. .+|.. ..++++|++++|++++..+.. +.. +++|++|+|++|.+++..|..|+++++
T Consensus 11 ~~l~~s~~~l~-~ip~~~~~~l~~L~l~~n~i~~~~~~~~~~~----------l~~L~~L~Ls~N~l~~~~~~~~~~l~~ 79 (192)
T 1w8a_A 11 TTVDCTGRGLK-EIPRDIPLHTTELLLNDNELGRISSDGLFGR----------LPHLVKLELKRNQLTGIEPNAFEGASH 79 (192)
T ss_dssp TEEECTTSCCS-SCCSCCCTTCSEEECCSCCCCSBCCSCSGGG----------CTTCCEEECCSSCCCCBCTTTTTTCTT
T ss_pred CEEEcCCCCcC-cCccCCCCCCCEEECCCCcCCccCCcccccc----------CCCCCEEECCCCCCCCcCHhHcCCccc
Confidence 44555555553 33332 347899999999998655543 555 899999999999999888999999999
Q ss_pred CCEEECCCCcCccccchhccCCCCCCEEEccCCCCcccCCcCccCcCCCC
Q 037325 548 LYILDMSNNSLSGSTPESIGSLRTVKFLVLRNNYLSGKLPLSLKNCTFQE 597 (598)
Q Consensus 548 L~~L~ls~N~l~~~~p~~l~~l~~L~~L~l~~n~l~g~~P~~~~~~~~L~ 597 (598)
|++|+|++|++++..|..|.++++|++|++++|++++.+|..+..+++|+
T Consensus 80 L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~ 129 (192)
T 1w8a_A 80 IQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLT 129 (192)
T ss_dssp CCEEECCSCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCC
T ss_pred CCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCC
Confidence 99999999999988888899999999999999999999999999888775
|
| >2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A | Back alignment and structure |
|---|
Probab=99.56 E-value=1.4e-14 Score=126.03 Aligned_cols=125 Identities=17% Similarity=0.075 Sum_probs=77.3
Q ss_pred CCCEEEccCCcCc-ccCCCCcccC-CCCEEEcccCcCccc-CCCCCcCCcEEEccCCcccccCCchhhcccCCCCCcccc
Q 037325 445 TLDELDVAYNELR-GRVPNSLGFN-FPAKVDLSFNNFEGR-LLLWSFNVTKLYLRDNSFSGLIPNDIGQNLPFLTDLGNL 521 (598)
Q Consensus 445 ~L~~L~ls~n~~~-~~~p~~~~~~-~L~~l~ls~n~l~~~-~~~~~~~L~~L~ls~n~l~~~~p~~~~~~~~~~~~~~~l 521 (598)
++++|++++|.++ +.+|..+... .++.|++++|.+++. ....+++|++|++++|++++.+|..+.. +
T Consensus 18 ~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~----------l 87 (149)
T 2je0_A 18 DVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSIANLPKLNKLKKLELSDNRVSGGLEVLAEK----------C 87 (149)
T ss_dssp GCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCCTTCCCCTTCCEEECCSSCCCSCTHHHHHH----------C
T ss_pred cCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCchhhhcCCCCCEEECCCCcccchHHHHhhh----------C
Confidence 3444444444444 3333332222 334444444433332 1112567788888888887667766665 6
Q ss_pred CCCCeEeCcCCccccc-cchhccCCCCCCEEECCCCcCccccc---hhccCCCCCCEEEccC
Q 037325 522 KQLITLVISNNNLSGE-IPLLFSNISFLYILDMSNNSLSGSTP---ESIGSLRTVKFLVLRN 579 (598)
Q Consensus 522 ~~L~~L~Ls~N~l~~~-~p~~~~~l~~L~~L~ls~N~l~~~~p---~~l~~l~~L~~L~l~~ 579 (598)
++|++|++++|.+++. .|..++++++|++|++++|++++..+ ..+..+++|+.||+++
T Consensus 88 ~~L~~L~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~d 149 (149)
T 2je0_A 88 PNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGYD 149 (149)
T ss_dssp TTCCEEECTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTBC
T ss_pred CCCCEEECCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCCC
Confidence 7888888888888753 34777888888888888888876554 4677788888887763
|
| >2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A | Back alignment and structure |
|---|
Probab=99.54 E-value=3.1e-14 Score=126.55 Aligned_cols=132 Identities=25% Similarity=0.187 Sum_probs=60.7
Q ss_pred CCccEEEccCCCCC-CCcchhhhcCCCCCEEEccCCcccccCCccccCCCCccEEECcCCCcCccccchhhcCCCCCCEE
Q 037325 240 ASLQVLDLSNNDFN-STTPHWLFNITSLLCLDLGSNDLQGDIPDGFASLNSLQELDLSGNSFLGGQLSRNLGKLCNLRTM 318 (598)
Q Consensus 240 ~~L~~L~L~~n~l~-~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~l~~l~~L~~L 318 (598)
++|++|++++|.++ +.+|..+..+++|+.|++++|.+++. ..+..+++|++|++++|. +.+.+|..+..+++
T Consensus 24 ~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~l~~---- 96 (168)
T 2ell_A 24 AAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENR-IFGGLDMLAEKLPN---- 96 (168)
T ss_dssp TSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCC-CCSCCCHHHHHCTT----
T ss_pred ccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCc-CchHHHHHHhhCCC----
Confidence 34555555555544 33444444445555555555554432 334444444444444444 22223333333444
Q ss_pred ecccccCCcccchhhhCCCCCCCCCCccEEEccCccccccC-ccccCCCCCCCEEEccCCcCCccch---hhccCCCCCC
Q 037325 319 ILSRNNISSEVSDFLDGLSECTNSILLEKLELRFNQFTGIL-PISLGSLKNLRHLVLWQNSFLGSIP---PSIGNLTLLK 394 (598)
Q Consensus 319 ~l~~n~l~~~~~~~~~~l~~~~~~~~L~~L~Ls~n~l~~~~-~~~l~~l~~L~~L~ls~n~l~~~~~---~~l~~l~~L~ 394 (598)
|++|++++|.+++.. +..+..+++|+.|++++|++++..+ ..+..+++|+
T Consensus 97 --------------------------L~~L~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~ 150 (168)
T 2ell_A 97 --------------------------LTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLT 150 (168)
T ss_dssp --------------------------CCEEECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCC
T ss_pred --------------------------CCEEeccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCc
Confidence 444444444444321 1344445555555555555543322 2445555555
Q ss_pred EEeCcCCcCC
Q 037325 395 ELYLASNQMN 404 (598)
Q Consensus 395 ~L~l~~n~l~ 404 (598)
+|++++|.+.
T Consensus 151 ~L~l~~n~~~ 160 (168)
T 2ell_A 151 YLDGYDREDQ 160 (168)
T ss_dssp EETTEETTSC
T ss_pred EecCCCCChh
Confidence 5555555443
|
| >2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri} | Back alignment and structure |
|---|
Probab=99.54 E-value=6.8e-14 Score=125.46 Aligned_cols=133 Identities=18% Similarity=0.209 Sum_probs=86.2
Q ss_pred CCEEEccCccCccccchHHHhcCCCCCEEEccCCcCcccCCCCcccCCCCEEEcccCcCcccCCCCCcCCcEEEccCCcc
Q 037325 421 LRTLVLNKARISDTISDWFWQLSLTLDELDVAYNELRGRVPNSLGFNFPAKVDLSFNNFEGRLLLWSFNVTKLYLRDNSF 500 (598)
Q Consensus 421 L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~ls~n~~~~~~p~~~~~~~L~~l~ls~n~l~~~~~~~~~~L~~L~ls~n~l 500 (598)
.+.+++++++++..... ..++|++|++++|++++..+..+. .+++|++|++++|++
T Consensus 9 ~~~l~~~~~~l~~~p~~----~~~~l~~L~l~~n~l~~~~~~~~~--------------------~l~~L~~L~l~~n~l 64 (177)
T 2o6r_A 9 GTEIRCNSKGLTSVPTG----IPSSATRLELESNKLQSLPHGVFD--------------------KLTQLTKLSLSQNQI 64 (177)
T ss_dssp TTEEECCSSCCSSCCTT----CCTTCSEEECCSSCCCCCCTTTTT--------------------TCTTCSEEECCSSCC
T ss_pred CCEEEecCCCCccCCCC----CCCCCcEEEeCCCcccEeCHHHhc--------------------CcccccEEECCCCcc
Confidence 34566666655533211 124555666665555543332222 245777778888877
Q ss_pred cccCCchhhcccCCCCCccccCCCCeEeCcCCccccccchhccCCCCCCEEECCCCcCccccchhccCCCCCCEEEccCC
Q 037325 501 SGLIPNDIGQNLPFLTDLGNLKQLITLVISNNNLSGEIPLLFSNISFLYILDMSNNSLSGSTPESIGSLRTVKFLVLRNN 580 (598)
Q Consensus 501 ~~~~p~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~l~~l~~L~~L~l~~n 580 (598)
++..+..+.. +++|+.|++++|.+++..+..+.++++|++|++++|++++..+..+..+++|++|++++|
T Consensus 65 ~~~~~~~~~~----------l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N 134 (177)
T 2o6r_A 65 QSLPDGVFDK----------LTKLTILYLHENKLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTN 134 (177)
T ss_dssp CCCCTTTTTT----------CTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSS
T ss_pred eEeChhHccC----------CCccCEEECCCCCccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCC
Confidence 7444433444 778888888888888666666778888888888888888555555677888888888888
Q ss_pred CCcccCC
Q 037325 581 YLSGKLP 587 (598)
Q Consensus 581 ~l~g~~P 587 (598)
++.+..|
T Consensus 135 ~~~~~~~ 141 (177)
T 2o6r_A 135 PWDCSCP 141 (177)
T ss_dssp CBCCCHH
T ss_pred CeeccCc
Confidence 8876554
|
| >2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.53 E-value=8.1e-14 Score=126.59 Aligned_cols=88 Identities=25% Similarity=0.322 Sum_probs=68.7
Q ss_pred CcCCcEEEccCCcccccCCchhhcccCCCCCccccCCCCeEeCcCCccccccchhccCCCCCCEEECCCCcCccccchhc
Q 037325 487 SFNVTKLYLRDNSFSGLIPNDIGQNLPFLTDLGNLKQLITLVISNNNLSGEIPLLFSNISFLYILDMSNNSLSGSTPESI 566 (598)
Q Consensus 487 ~~~L~~L~ls~n~l~~~~p~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~l 566 (598)
+++|+.|++++|++++..+..+.. +++|+.|+|++|.+++..|..|.++++|++|+|++|++++..+..|
T Consensus 53 l~~L~~L~Ls~N~i~~i~~~~f~~----------l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~ 122 (193)
T 2wfh_A 53 YKHLTLIDLSNNRISTLSNQSFSN----------MTQLLTLILSYNRLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAF 122 (193)
T ss_dssp CTTCCEEECCSSCCCCCCTTTTTT----------CTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCCCBCCTTTT
T ss_pred ccCCCEEECCCCcCCEeCHhHccC----------CCCCCEEECCCCccCEeCHHHhCCCCCCCEEECCCCCCCeeChhhh
Confidence 467788888888887655555655 7888888888888887777778888888888888888886555567
Q ss_pred cCCCCCCEEEccCCCCcc
Q 037325 567 GSLRTVKFLVLRNNYLSG 584 (598)
Q Consensus 567 ~~l~~L~~L~l~~n~l~g 584 (598)
..+++|+.|++++|++..
T Consensus 123 ~~l~~L~~L~L~~N~~~C 140 (193)
T 2wfh_A 123 NDLSALSHLAIGANPLYC 140 (193)
T ss_dssp TTCTTCCEEECCSSCEEC
T ss_pred hcCccccEEEeCCCCeec
Confidence 888888888888888753
|
| >2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A | Back alignment and structure |
|---|
Probab=99.53 E-value=2.1e-14 Score=124.83 Aligned_cols=130 Identities=19% Similarity=0.186 Sum_probs=68.7
Q ss_pred CCCCCEEeCCCCCCCCCCcchhccCCCCCCEEECcCCCCCcccchhccCCCCCCEEEccCCCCCCCccChhhhcCCCCCc
Q 037325 112 LKDLEYLDLSMNNFTGFQVPEFIGSLKELRYLNLSGSFFSGTIPQTLGNLSNLLYLDLNNFLDQSNQIDLEWLSGLSSLV 191 (598)
Q Consensus 112 l~~L~~L~Ls~n~l~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~~l~~L~ 191 (598)
.++|++|++++|.++...+|..+..+++|++|++++|.+++. ..+..+++|++|+
T Consensus 16 ~~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~----------------------- 70 (149)
T 2je0_A 16 PSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLE----------------------- 70 (149)
T ss_dssp GGGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC--TTCCCCTTCCEEE-----------------------
T ss_pred CccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc--hhhhcCCCCCEEE-----------------------
Confidence 356666666666665212565566666666666666666533 3344444444444
Q ss_pred EEEcCCCCCCCCcccchHhhhcCCCCCEEEcCCCCCCCCCCCCCcCCCCCccEEEccCCCCCCCcc---hhhhcCCCCCE
Q 037325 192 YFNLGGADLSKAGAYWLEVFNKLHSFVELHLPNCNLPSLPLSFPSLNFASLQVLDLSNNDFNSTTP---HWLFNITSLLC 268 (598)
Q Consensus 192 ~L~l~~n~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~---~~l~~l~~L~~ 268 (598)
+++|.+.+.. +..+..+++|++|++++|.+++.+....+..+++|++|++++|.+++..+ ..+..+++|+.
T Consensus 71 ---Ls~n~i~~~~---~~~~~~l~~L~~L~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~ 144 (149)
T 2je0_A 71 ---LSDNRVSGGL---EVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTY 144 (149)
T ss_dssp ---CCSSCCCSCT---HHHHHHCTTCCEEECTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCE
T ss_pred ---CCCCcccchH---HHHhhhCCCCCEEECCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCccc
Confidence 4445544432 44455555566666655555553211234445555555555555554433 34555555555
Q ss_pred EEcc
Q 037325 269 LDLG 272 (598)
Q Consensus 269 L~l~ 272 (598)
|+++
T Consensus 145 L~l~ 148 (149)
T 2je0_A 145 LDGY 148 (149)
T ss_dssp ETTB
T ss_pred ccCC
Confidence 5543
|
| >2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.51 E-value=1.5e-13 Score=124.89 Aligned_cols=115 Identities=28% Similarity=0.360 Sum_probs=95.6
Q ss_pred EEEcccCcCcccCCC-CCcCCcEEEccCCcccccCCchhhcccCCCCCccccCCCCeEeCcCCccccccchhccCCCCCC
Q 037325 471 KVDLSFNNFEGRLLL-WSFNVTKLYLRDNSFSGLIPNDIGQNLPFLTDLGNLKQLITLVISNNNLSGEIPLLFSNISFLY 549 (598)
Q Consensus 471 ~l~ls~n~l~~~~~~-~~~~L~~L~ls~n~l~~~~p~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~ 549 (598)
.+++++|++.. +|. ..+++++|++++|+++ .+|..+.. +++|+.|+|++|.+++..+..|.++++|+
T Consensus 14 ~l~~~~~~l~~-ip~~~~~~l~~L~L~~n~i~-~ip~~~~~----------l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~ 81 (193)
T 2wfh_A 14 VVRCSNKGLKV-LPKGIPRDVTELYLDGNQFT-LVPKELSN----------YKHLTLIDLSNNRISTLSNQSFSNMTQLL 81 (193)
T ss_dssp EEECTTSCCSS-CCSCCCTTCCEEECCSSCCC-SCCGGGGG----------CTTCCEEECCSSCCCCCCTTTTTTCTTCC
T ss_pred EEEcCCCCCCc-CCCCCCCCCCEEECCCCcCc-hhHHHhhc----------ccCCCEEECCCCcCCEeCHhHccCCCCCC
Confidence 44444544442 232 2457999999999998 78877776 89999999999999988888999999999
Q ss_pred EEECCCCcCccccchhccCCCCCCEEEccCCCCcccCCcCccCcCCCC
Q 037325 550 ILDMSNNSLSGSTPESIGSLRTVKFLVLRNNYLSGKLPLSLKNCTFQE 597 (598)
Q Consensus 550 ~L~ls~N~l~~~~p~~l~~l~~L~~L~l~~n~l~g~~P~~~~~~~~L~ 597 (598)
+|+|++|++++..|..|.++++|++|++++|++++..|..+..+++|+
T Consensus 82 ~L~Ls~N~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~ 129 (193)
T 2wfh_A 82 TLILSYNRLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALS 129 (193)
T ss_dssp EEECCSSCCCBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCC
T ss_pred EEECCCCccCEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCcccc
Confidence 999999999988888999999999999999999965555688887765
|
| >3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D | Back alignment and structure |
|---|
Probab=99.48 E-value=2.2e-13 Score=120.96 Aligned_cols=106 Identities=25% Similarity=0.274 Sum_probs=79.6
Q ss_pred CEEEcccCcCcccCCCCCcCCcEEEccCCcccccCCchhhcccCCCCCccccCCCCeEeCcCCccccccchhccCCCCCC
Q 037325 470 AKVDLSFNNFEGRLLLWSFNVTKLYLRDNSFSGLIPNDIGQNLPFLTDLGNLKQLITLVISNNNLSGEIPLLFSNISFLY 549 (598)
Q Consensus 470 ~~l~ls~n~l~~~~~~~~~~L~~L~ls~n~l~~~~p~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~ 549 (598)
+.+++++|+++.......+++++|++++|++++..|..+.. +++|+.|+|++|++++..+..|.++++|+
T Consensus 12 ~~l~~s~n~l~~ip~~~~~~l~~L~L~~N~i~~~~~~~~~~----------l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~ 81 (170)
T 3g39_A 12 TTVDCSGKSLASVPTGIPTTTQVLYLYDNQITKLEPGVFDR----------LTQLTRLDLDNNQLTVLPAGVFDKLTQLT 81 (170)
T ss_dssp TEEECTTSCCSSCCSCCCTTCSEEECCSSCCCCCCTTTTTT----------CTTCSEEECCSSCCCCCCTTTTTTCTTCC
T ss_pred CEEEeCCCCcCccCccCCCCCcEEEcCCCcCCccChhhhcC----------cccCCEEECCCCCcCccChhhccCCCCCC
Confidence 34444554444322222357888888888888766766666 88899999999999866666778889999
Q ss_pred EEECCCCcCccccchhccCCCCCCEEEccCCCCccc
Q 037325 550 ILDMSNNSLSGSTPESIGSLRTVKFLVLRNNYLSGK 585 (598)
Q Consensus 550 ~L~ls~N~l~~~~p~~l~~l~~L~~L~l~~n~l~g~ 585 (598)
+|+|++|++++..|..|.++++|++|++++|++.+.
T Consensus 82 ~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c~ 117 (170)
T 3g39_A 82 QLSLNDNQLKSIPRGAFDNLKSLTHIWLLNNPWDCA 117 (170)
T ss_dssp EEECCSSCCCCCCTTTTTTCTTCCEEECCSSCBCTT
T ss_pred EEECCCCccCEeCHHHhcCCCCCCEEEeCCCCCCCC
Confidence 999999999876666788888999999999988754
|
| >1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 | Back alignment and structure |
|---|
Probab=99.46 E-value=1.6e-13 Score=122.81 Aligned_cols=132 Identities=20% Similarity=0.209 Sum_probs=88.8
Q ss_pred cCCCCCCEEEccCccCccccchHHHhcCCCCCEEEccCCcCcccCCCCcccCCCCEEEcccCcCcccCCCCCcCCcEEEc
Q 037325 416 KNQTELRTLVLNKARISDTISDWFWQLSLTLDELDVAYNELRGRVPNSLGFNFPAKVDLSFNNFEGRLLLWSFNVTKLYL 495 (598)
Q Consensus 416 ~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~ls~n~~~~~~p~~~~~~~L~~l~ls~n~l~~~~~~~~~~L~~L~l 495 (598)
..+++|+.|++++|+++.. +. +....++|++|++++|.+++. ..+ ..+++|++|++
T Consensus 16 ~~~~~L~~L~l~~n~l~~i-~~-~~~~~~~L~~L~Ls~N~l~~~--~~l--------------------~~l~~L~~L~L 71 (176)
T 1a9n_A 16 TNAVRDRELDLRGYKIPVI-EN-LGATLDQFDAIDFSDNEIRKL--DGF--------------------PLLRRLKTLLV 71 (176)
T ss_dssp ECTTSCEEEECTTSCCCSC-CC-GGGGTTCCSEEECCSSCCCEE--CCC--------------------CCCSSCCEEEC
T ss_pred CCcCCceEEEeeCCCCchh-HH-hhhcCCCCCEEECCCCCCCcc--ccc--------------------ccCCCCCEEEC
Confidence 3445555566665555532 22 223234667777777666542 111 12457888888
Q ss_pred cCCcccccCCchhhcccCCCCCccccCCCCeEeCcCCccccccch--hccCCCCCCEEECCCCcCccccchh----ccCC
Q 037325 496 RDNSFSGLIPNDIGQNLPFLTDLGNLKQLITLVISNNNLSGEIPL--LFSNISFLYILDMSNNSLSGSTPES----IGSL 569 (598)
Q Consensus 496 s~n~l~~~~p~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~--~~~~l~~L~~L~ls~N~l~~~~p~~----l~~l 569 (598)
++|++++..|..+.. +++|+.|++++|.++ .+|. .+.++++|++|++++|.++ .+|.. +..+
T Consensus 72 s~N~l~~~~~~~~~~----------l~~L~~L~L~~N~i~-~~~~~~~l~~l~~L~~L~l~~N~i~-~~~~~~~~~~~~l 139 (176)
T 1a9n_A 72 NNNRICRIGEGLDQA----------LPDLTELILTNNSLV-ELGDLDPLASLKSLTYLCILRNPVT-NKKHYRLYVIYKV 139 (176)
T ss_dssp CSSCCCEECSCHHHH----------CTTCCEEECCSCCCC-CGGGGGGGGGCTTCCEEECCSSGGG-GSTTHHHHHHHHC
T ss_pred CCCcccccCcchhhc----------CCCCCEEECCCCcCC-cchhhHhhhcCCCCCEEEecCCCCC-CcHhHHHHHHHHC
Confidence 888887443333355 788899999999886 6666 7888888999999999887 56664 7888
Q ss_pred CCCCEEEccCCCCc
Q 037325 570 RTVKFLVLRNNYLS 583 (598)
Q Consensus 570 ~~L~~L~l~~n~l~ 583 (598)
++|+.||+++|...
T Consensus 140 ~~L~~Ld~~~n~~~ 153 (176)
T 1a9n_A 140 PQVRVLDFQKVKLK 153 (176)
T ss_dssp TTCSEETTEECCHH
T ss_pred CccceeCCCcCCHH
Confidence 88999999888754
|
| >2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri} | Back alignment and structure |
|---|
Probab=99.45 E-value=1.1e-12 Score=117.44 Aligned_cols=109 Identities=27% Similarity=0.304 Sum_probs=43.0
Q ss_pred CccEEECcCCCcCccccchhhcCCCCCCEEecccccCCcccchhhhCCCCCCCCCCccEEEccCccccccCccccCCCCC
Q 037325 289 SLQELDLSGNSFLGGQLSRNLGKLCNLRTMILSRNNISSEVSDFLDGLSECTNSILLEKLELRFNQFTGILPISLGSLKN 368 (598)
Q Consensus 289 ~L~~L~l~~n~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~l~~ 368 (598)
+|++|++++|. +.+..+..+..+++|++|++++|.+++..+..+..++ +|++|++++|.+++..+..+..+++
T Consensus 29 ~l~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~------~L~~L~l~~N~l~~~~~~~~~~l~~ 101 (177)
T 2o6r_A 29 SATRLELESNK-LQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLT------KLTILYLHENKLQSLPNGVFDKLTQ 101 (177)
T ss_dssp TCSEEECCSSC-CCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCT------TCCEEECCSSCCCCCCTTTTTTCTT
T ss_pred CCcEEEeCCCc-ccEeCHHHhcCcccccEEECCCCcceEeChhHccCCC------ccCEEECCCCCccccCHHHhhCCcc
Confidence 34444444444 2222223333444444444444444333333333333 3444444444444333333344444
Q ss_pred CCEEEccCCcCCccchhhccCCCCCCEEeCcCCcCC
Q 037325 369 LRHLVLWQNSFLGSIPPSIGNLTLLKELYLASNQMN 404 (598)
Q Consensus 369 L~~L~ls~n~l~~~~~~~l~~l~~L~~L~l~~n~l~ 404 (598)
|++|++++|++++..+..+..+++|++|++++|++.
T Consensus 102 L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~ 137 (177)
T 2o6r_A 102 LKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWD 137 (177)
T ss_dssp CCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred cCEEECcCCcceEeCHHHhcCCcccCEEEecCCCee
Confidence 444444444444322222333444444444444433
|
| >4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A | Back alignment and structure |
|---|
Probab=99.45 E-value=6.4e-12 Score=127.45 Aligned_cols=201 Identities=12% Similarity=0.125 Sum_probs=91.6
Q ss_pred hhhcCCCCCEEEcCCCCCCCCCCCCCcCCCCCccEEEccCCCCCCCcchhhhcCCCCCEEEccCCcccccCCccccCCCC
Q 037325 210 VFNKLHSFVELHLPNCNLPSLPLSFPSLNFASLQVLDLSNNDFNSTTPHWLFNITSLLCLDLGSNDLQGDIPDGFASLNS 289 (598)
Q Consensus 210 ~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~ 289 (598)
.|.+|++|+.+++.+|.++.++. ..+. +.+|+.+.+..+ ++......|.++++|+.+.+..+ ++.....+|.+ .+
T Consensus 175 aF~~c~~L~~l~l~~n~l~~I~~-~aF~-~~~L~~l~lp~~-l~~I~~~aF~~~~~L~~l~l~~~-l~~I~~~aF~~-~~ 249 (401)
T 4fdw_A 175 IFYYCYNLKKADLSKTKITKLPA-STFV-YAGIEEVLLPVT-LKEIGSQAFLKTSQLKTIEIPEN-VSTIGQEAFRE-SG 249 (401)
T ss_dssp TTTTCTTCCEEECTTSCCSEECT-TTTT-TCCCSEEECCTT-CCEECTTTTTTCTTCCCEECCTT-CCEECTTTTTT-CC
T ss_pred HhhCcccCCeeecCCCcceEech-hhEe-ecccCEEEeCCc-hheehhhHhhCCCCCCEEecCCC-ccCcccccccc-CC
Confidence 34444444444444444444333 2222 244444444422 33333334444555555555442 22222233333 44
Q ss_pred ccEEECcCCCcCccccchhhcCCCCCCEEecccccCC-----cccchhhhCCCCCCCCCCccEEEccCccccccCccccC
Q 037325 290 LQELDLSGNSFLGGQLSRNLGKLCNLRTMILSRNNIS-----SEVSDFLDGLSECTNSILLEKLELRFNQFTGILPISLG 364 (598)
Q Consensus 290 L~~L~l~~n~~~~~~~~~~l~~l~~L~~L~l~~n~l~-----~~~~~~~~~l~~~~~~~~L~~L~Ls~n~l~~~~~~~l~ 364 (598)
|+.+.+.++ +.......|..|++|+.+.+.++.+. ......|..+. +|+.+++.+ .++......|.
T Consensus 250 L~~i~lp~~--i~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~------~L~~l~l~~-~i~~I~~~aF~ 320 (401)
T 4fdw_A 250 ITTVKLPNG--VTNIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCP------KLARFEIPE-SIRILGQGLLG 320 (401)
T ss_dssp CSEEEEETT--CCEECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCT------TCCEECCCT-TCCEECTTTTT
T ss_pred ccEEEeCCC--ccEEChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCc------cCCeEEeCC-ceEEEhhhhhc
Confidence 555555332 22222344555555555555544333 22333444444 566666653 34444444566
Q ss_pred CCCCCCEEEccCCcCCccchhhccCCCCCCEEeCcCCcCCcccCCCchhhhcCC-CCCCEEEccCcc
Q 037325 365 SLKNLRHLVLWQNSFLGSIPPSIGNLTLLKELYLASNQMNGQKISDSYQHLKNQ-TELRTLVLNKAR 430 (598)
Q Consensus 365 ~l~~L~~L~ls~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~~-~~L~~L~l~~n~ 430 (598)
++++|+.+.+..+ ++..-..+|.++ +|+.+++.+|.+.... .. .+..+ ..++.+.+..+.
T Consensus 321 ~c~~L~~l~lp~~-l~~I~~~aF~~~-~L~~l~l~~n~~~~l~-~~---~F~~~~~~l~~l~vp~~~ 381 (401)
T 4fdw_A 321 GNRKVTQLTIPAN-VTQINFSAFNNT-GIKEVKVEGTTPPQVF-EK---VWYGFPDDITVIRVPAES 381 (401)
T ss_dssp TCCSCCEEEECTT-CCEECTTSSSSS-CCCEEEECCSSCCBCC-CS---SCCCSCTTCCEEEECGGG
T ss_pred CCCCccEEEECcc-ccEEcHHhCCCC-CCCEEEEcCCCCcccc-cc---cccCCCCCccEEEeCHHH
Confidence 6666666666443 443334456666 6666666666544322 22 12333 255666665544
|
| >2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus} | Back alignment and structure |
|---|
Probab=99.44 E-value=6.8e-13 Score=118.21 Aligned_cols=103 Identities=20% Similarity=0.284 Sum_probs=75.4
Q ss_pred EEEcccCcCcccCCC-CCcCCcEEEccCCcccccCCchhhcccCCCCCccccCCCCeEeCcCCccccccchhccCCCCCC
Q 037325 471 KVDLSFNNFEGRLLL-WSFNVTKLYLRDNSFSGLIPNDIGQNLPFLTDLGNLKQLITLVISNNNLSGEIPLLFSNISFLY 549 (598)
Q Consensus 471 ~l~ls~n~l~~~~~~-~~~~L~~L~ls~n~l~~~~p~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~ 549 (598)
.+++++|++. .+|. ..++|++|++++|++++..|..+.. +++|+.|+|++|+|++..+..|.++++|+
T Consensus 16 ~l~~~~n~l~-~iP~~~~~~L~~L~Ls~N~l~~~~~~~~~~----------l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~ 84 (174)
T 2r9u_A 16 LVNCQNIRLA-SVPAGIPTDKQRLWLNNNQITKLEPGVFDH----------LVNLQQLYFNSNKLTAIPTGVFDKLTQLT 84 (174)
T ss_dssp EEECCSSCCS-SCCSCCCTTCSEEECCSSCCCCCCTTTTTT----------CTTCCEEECCSSCCCCCCTTTTTTCTTCC
T ss_pred EEEeCCCCCC-ccCCCcCCCCcEEEeCCCCccccCHHHhcC----------CcCCCEEECCCCCCCccChhHhCCcchhh
Confidence 4444444443 2222 2357888888888888766766666 78888888888888865555678888888
Q ss_pred EEECCCCcCccccchhccCCCCCCEEEccCCCCcc
Q 037325 550 ILDMSNNSLSGSTPESIGSLRTVKFLVLRNNYLSG 584 (598)
Q Consensus 550 ~L~ls~N~l~~~~p~~l~~l~~L~~L~l~~n~l~g 584 (598)
+|+|++|++++..+..|..+++|++|++++|++..
T Consensus 85 ~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~~~c 119 (174)
T 2r9u_A 85 QLDLNDNHLKSIPRGAFDNLKSLTHIYLYNNPWDC 119 (174)
T ss_dssp EEECCSSCCCCCCTTTTTTCTTCSEEECCSSCBCT
T ss_pred EEECCCCccceeCHHHhccccCCCEEEeCCCCccc
Confidence 88888888886555568888888888888888873
|
| >1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A | Back alignment and structure |
|---|
Probab=99.42 E-value=6.3e-15 Score=134.85 Aligned_cols=158 Identities=18% Similarity=0.157 Sum_probs=100.6
Q ss_pred ccCCCCCCEEeCcCCcCCcccCCC---chhhhcCCCCCCEEEccCccCccccchHHHhcCCCCCEEEccCCcCcccCCCC
Q 037325 387 IGNLTLLKELYLASNQMNGQKISD---SYQHLKNQTELRTLVLNKARISDTISDWFWQLSLTLDELDVAYNELRGRVPNS 463 (598)
Q Consensus 387 l~~l~~L~~L~l~~n~l~~~~~~~---~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~ls~n~~~~~~p~~ 463 (598)
+.....++.++++.+.+++.. +. .-..+..+++|+.|++++|++++ +| .+.. +++|++|++++|.++ .+|..
T Consensus 14 ~~~~~~l~~l~l~~~~l~~~~-~~l~~l~~~~~~l~~L~~L~ls~n~l~~-l~-~~~~-l~~L~~L~l~~n~l~-~l~~~ 88 (198)
T 1ds9_A 14 FEERKSVVATEAEKVELHGMI-PPIEKMDATLSTLKACKHLALSTNNIEK-IS-SLSG-MENLRILSLGRNLIK-KIENL 88 (198)
T ss_dssp HHHTTCCCCTTCSEEECCBCC-TTCCCCHHHHHHTTTCSEEECSEEEESC-CC-CHHH-HTTCCEEEEEEEEEC-SCSSH
T ss_pred HHhcccccCcchheeEecccc-CcHhhhhHHHhcCCCCCEEECCCCCCcc-cc-cccc-CCCCCEEECCCCCcc-cccch
Confidence 444556666666666666553 21 00134445555555555555554 23 3332 445555555555544 22221
Q ss_pred cccCCCCEEEcccCcCcccCCCCCcCCcEEEccCCcccccCCchhhcccCCCCCccccCCCCeEeCcCCccccccc-hhc
Q 037325 464 LGFNFPAKVDLSFNNFEGRLLLWSFNVTKLYLRDNSFSGLIPNDIGQNLPFLTDLGNLKQLITLVISNNNLSGEIP-LLF 542 (598)
Q Consensus 464 ~~~~~L~~l~ls~n~l~~~~~~~~~~L~~L~ls~n~l~~~~p~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p-~~~ 542 (598)
+. .+++|++|++++|++++ +| .+.. +++|+.|++++|.+++..+ ..+
T Consensus 89 ~~--------------------~~~~L~~L~L~~N~l~~-l~-~~~~----------l~~L~~L~l~~N~i~~~~~~~~l 136 (198)
T 1ds9_A 89 DA--------------------VADTLEELWISYNQIAS-LS-GIEK----------LVNLRVLYMSNNKITNWGEIDKL 136 (198)
T ss_dssp HH--------------------HHHHCSEEEEEEEECCC-HH-HHHH----------HHHSSEEEESEEECCCHHHHHHH
T ss_pred hh--------------------cCCcCCEEECcCCcCCc-CC-cccc----------CCCCCEEECCCCcCCchhHHHHH
Confidence 11 13678888888888875 44 5655 7899999999999984322 478
Q ss_pred cCCCCCCEEECCCCcCccccchh----------ccCCCCCCEEEccCCCCc
Q 037325 543 SNISFLYILDMSNNSLSGSTPES----------IGSLRTVKFLVLRNNYLS 583 (598)
Q Consensus 543 ~~l~~L~~L~ls~N~l~~~~p~~----------l~~l~~L~~L~l~~n~l~ 583 (598)
.++++|++|++++|.+++.+|.. +..+++|+.|| +|+++
T Consensus 137 ~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~l~~L~~Ld--~~~i~ 185 (198)
T 1ds9_A 137 AALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD--GMPVD 185 (198)
T ss_dssp TTTTTCSEEEECSCHHHHHHHTTTTHHHHHHHHHHHCSSCSEEC--CGGGT
T ss_pred hcCCCCCEEEecCCccccccccccchHHHHHHHHHhCCCcEEEC--CcccC
Confidence 89999999999999998776653 78889999887 66665
|
| >4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A | Back alignment and structure |
|---|
Probab=99.42 E-value=9.2e-12 Score=126.29 Aligned_cols=243 Identities=13% Similarity=0.096 Sum_probs=104.6
Q ss_pred hcCCCCCcEEEcCCCCCCCCcccchHhhhcCCCCCEEEcCCCCCCCCCCCCCcCCCCCccEEEccCCCCCCCcchhhhcC
Q 037325 184 LSGLSSLVYFNLGGADLSKAGAYWLEVFNKLHSFVELHLPNCNLPSLPLSFPSLNFASLQVLDLSNNDFNSTTPHWLFNI 263 (598)
Q Consensus 184 ~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l 263 (598)
|.++ +|+.+.+..+ +..+. ...|.++ +|+.+.+.+ .++.+.. ..+..|++|+.+++..|+++......|. +
T Consensus 132 F~~~-~L~~i~l~~~-i~~I~---~~aF~~~-~L~~i~lp~-~l~~I~~-~aF~~c~~L~~l~l~~n~l~~I~~~aF~-~ 202 (401)
T 4fdw_A 132 FRNS-QIAKVVLNEG-LKSIG---DMAFFNS-TVQEIVFPS-TLEQLKE-DIFYYCYNLKKADLSKTKITKLPASTFV-Y 202 (401)
T ss_dssp TTTC-CCSEEECCTT-CCEEC---TTTTTTC-CCCEEECCT-TCCEECS-STTTTCTTCCEEECTTSCCSEECTTTTT-T
T ss_pred cccC-CccEEEeCCC-ccEEC---HHhcCCC-CceEEEeCC-CccEehH-HHhhCcccCCeeecCCCcceEechhhEe-e
Confidence 4443 4555555443 33222 2334342 455555543 3444433 3445555555555555555433333333 3
Q ss_pred CCCCEEEccCCcccccCCccccCCCCccEEECcCCCcCccccchhhcCCCCCCEEecccccCCcccchhhhCCCCCCCCC
Q 037325 264 TSLLCLDLGSNDLQGDIPDGFASLNSLQELDLSGNSFLGGQLSRNLGKLCNLRTMILSRNNISSEVSDFLDGLSECTNSI 343 (598)
Q Consensus 264 ~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~~~~~~ 343 (598)
.+|+.+.+.++ +......+|.++++|+.+++..+ +.......|.. .
T Consensus 203 ~~L~~l~lp~~-l~~I~~~aF~~~~~L~~l~l~~~--------------------------l~~I~~~aF~~-~------ 248 (401)
T 4fdw_A 203 AGIEEVLLPVT-LKEIGSQAFLKTSQLKTIEIPEN--------------------------VSTIGQEAFRE-S------ 248 (401)
T ss_dssp CCCSEEECCTT-CCEECTTTTTTCTTCCCEECCTT--------------------------CCEECTTTTTT-C------
T ss_pred cccCEEEeCCc-hheehhhHhhCCCCCCEEecCCC--------------------------ccCcccccccc-C------
Confidence 45555555432 33233334445555555555443 22222233332 1
Q ss_pred CccEEEccCccccccCccccCCCCCCCEEEccCCcCC-----ccchhhccCCCCCCEEeCcCCcCCcccCCCchhhhcCC
Q 037325 344 LLEKLELRFNQFTGILPISLGSLKNLRHLVLWQNSFL-----GSIPPSIGNLTLLKELYLASNQMNGQKISDSYQHLKNQ 418 (598)
Q Consensus 344 ~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~ls~n~l~-----~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~~ 418 (598)
+|+.+.+. +.++......|.++++|+.+++.++.+. ...+..|.++++|+.+++.++ ++... . ..+.+|
T Consensus 249 ~L~~i~lp-~~i~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~~~-i~~I~-~---~aF~~c 322 (401)
T 4fdw_A 249 GITTVKLP-NGVTNIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIPES-IRILG-Q---GLLGGN 322 (401)
T ss_dssp CCSEEEEE-TTCCEECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCCTT-CCEEC-T---TTTTTC
T ss_pred CccEEEeC-CCccEEChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeCCc-eEEEh-h---hhhcCC
Confidence 34444442 2233333344455555555555444332 122334455555555555532 32221 1 234455
Q ss_pred CCCCEEEccCccCccccchHHHhcCCCCCEEEccCCcCcccCCCCcccC--CCCEEEcccCc
Q 037325 419 TELRTLVLNKARISDTISDWFWQLSLTLDELDVAYNELRGRVPNSLGFN--FPAKVDLSFNN 478 (598)
Q Consensus 419 ~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~ls~n~~~~~~p~~~~~~--~L~~l~ls~n~ 478 (598)
++|+.+.+..+ ++......|.. + +|+.+++++|......+..+... .++.+.+..+.
T Consensus 323 ~~L~~l~lp~~-l~~I~~~aF~~-~-~L~~l~l~~n~~~~l~~~~F~~~~~~l~~l~vp~~~ 381 (401)
T 4fdw_A 323 RKVTQLTIPAN-VTQINFSAFNN-T-GIKEVKVEGTTPPQVFEKVWYGFPDDITVIRVPAES 381 (401)
T ss_dssp CSCCEEEECTT-CCEECTTSSSS-S-CCCEEEECCSSCCBCCCSSCCCSCTTCCEEEECGGG
T ss_pred CCccEEEECcc-ccEEcHHhCCC-C-CCCEEEEcCCCCcccccccccCCCCCccEEEeCHHH
Confidence 55555555333 33222333332 4 55555555555443333333322 34555554443
|
| >4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=99.37 E-value=3.5e-11 Score=122.54 Aligned_cols=327 Identities=11% Similarity=0.066 Sum_probs=166.0
Q ss_pred hHhhhcCCCCCEEEcCCCCCCCCCCCCCcCCCCCccEEEccCCCCCCCcchhhhcCCCCCEEEccCCcccccCCccccCC
Q 037325 208 LEVFNKLHSFVELHLPNCNLPSLPLSFPSLNFASLQVLDLSNNDFNSTTPHWLFNITSLLCLDLGSNDLQGDIPDGFASL 287 (598)
Q Consensus 208 ~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l 287 (598)
...|.+|++|+++.+.. .++.+.. .++.++++|+.+++..+ ++......+.++++|+.+.+..+ +.......|..+
T Consensus 64 ~~AF~~c~~L~~i~lp~-~i~~I~~-~aF~~c~~L~~i~lp~~-l~~I~~~aF~~c~~L~~i~~p~~-l~~i~~~aF~~~ 139 (394)
T 4fs7_A 64 YAAFQGCRKVTEIKIPS-TVREIGE-FAFENCSKLEIINIPDS-VKMIGRCTFSGCYALKSILLPLM-LKSIGVEAFKGC 139 (394)
T ss_dssp TTTTTTCTTEEEEECCT-TCCEECT-TTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCCCCCCTT-CCEECTTTTTTC
T ss_pred HHHhhCCCCceEEEeCC-CccCcch-hHhhCCCCCcEEEeCCC-ceEccchhhcccccchhhcccCc-eeeecceeeecc
Confidence 35667777777777753 3555544 55666677777766543 33333344555666665544432 221222333333
Q ss_pred CCccEEECcCCCcCccccchhhcCCCCCCEEecccccCCcccchhhhCCCCCCCCCCccEEEccCccccccCccccCCCC
Q 037325 288 NSLQELDLSGNSFLGGQLSRNLGKLCNLRTMILSRNNISSEVSDFLDGLSECTNSILLEKLELRFNQFTGILPISLGSLK 367 (598)
Q Consensus 288 ~~L~~L~l~~n~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~l~ 367 (598)
..++........ ......|..+++|+.+.+.++ +... ....+.++.
T Consensus 140 ~~~~~~~~~~~~---~i~~~aF~~c~~L~~i~l~~~-~~~I------------------------------~~~~F~~c~ 185 (394)
T 4fs7_A 140 DFKEITIPEGVT---VIGDEAFATCESLEYVSLPDS-METL------------------------------HNGLFSGCG 185 (394)
T ss_dssp CCSEEECCTTCC---EECTTTTTTCTTCCEEECCTT-CCEE------------------------------CTTTTTTCT
T ss_pred cccccccCcccc---ccchhhhcccCCCcEEecCCc-ccee------------------------------ccccccCCC
Confidence 322222211111 111233445555555555332 1222 222344444
Q ss_pred CCCEEEccCCcCCccchhhccCCCCCCEEeCcCCcCCcccCCCchhhhcCCCCCCEEEccCccCccccchHHHhcCCCCC
Q 037325 368 NLRHLVLWQNSFLGSIPPSIGNLTLLKELYLASNQMNGQKISDSYQHLKNQTELRTLVLNKARISDTISDWFWQLSLTLD 447 (598)
Q Consensus 368 ~L~~L~ls~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~ 447 (598)
+|+.+.+..+ +.......+.++..|+.+.+..+...- . ........|+.+.+.... +......+ ..+..++
T Consensus 186 ~L~~i~l~~~-~~~I~~~~F~~~~~L~~i~~~~~~~~i---~---~~~~~~~~l~~i~ip~~~-~~i~~~~f-~~~~~l~ 256 (394)
T 4fs7_A 186 KLKSIKLPRN-LKIIRDYCFAECILLENMEFPNSLYYL---G---DFALSKTGVKNIIIPDSF-TELGKSVF-YGCTDLE 256 (394)
T ss_dssp TCCBCCCCTT-CCEECTTTTTTCTTCCBCCCCTTCCEE---C---TTTTTTCCCCEEEECTTC-CEECSSTT-TTCSSCC
T ss_pred CceEEEcCCC-ceEeCchhhccccccceeecCCCceEe---e---hhhcccCCCceEEECCCc-eecccccc-cccccce
Confidence 4444444333 221222334444444444444332110 0 011223344444443221 11111111 2244555
Q ss_pred EEEccCCcCcccCCCCcccC-CCCEEEcccCcCcccCCCCCcCCcEEEccCCcccccCCchhhcccCCCCCccccCCCCe
Q 037325 448 ELDVAYNELRGRVPNSLGFN-FPAKVDLSFNNFEGRLLLWSFNVTKLYLRDNSFSGLIPNDIGQNLPFLTDLGNLKQLIT 526 (598)
Q Consensus 448 ~L~ls~n~~~~~~p~~~~~~-~L~~l~ls~n~l~~~~~~~~~~L~~L~ls~n~l~~~~p~~~~~~~~~~~~~~~l~~L~~ 526 (598)
.+.+..+... .....+... .++.+....+.+.......+.+|+.+.+.++ ++..-...| ..+++|+.
T Consensus 257 ~~~~~~~~~~-i~~~~F~~~~~l~~~~~~~~~i~~~~F~~~~~L~~i~l~~~-i~~I~~~aF----------~~c~~L~~ 324 (394)
T 4fs7_A 257 SISIQNNKLR-IGGSLFYNCSGLKKVIYGSVIVPEKTFYGCSSLTEVKLLDS-VKFIGEEAF----------ESCTSLVS 324 (394)
T ss_dssp EEEECCTTCE-ECSCTTTTCTTCCEEEECSSEECTTTTTTCTTCCEEEECTT-CCEECTTTT----------TTCTTCCE
T ss_pred eEEcCCCcce-eeccccccccccceeccCceeeccccccccccccccccccc-cceechhhh----------cCCCCCCE
Confidence 5555544322 112222222 4555555554444444455678888888655 432222233 34889999
Q ss_pred EeCcCCccccccchhccCCCCCCEEECCCCcCccccchhccCCCCCCEEEccCCCCcccCCcCccCcCCCC
Q 037325 527 LVISNNNLSGEIPLLFSNISFLYILDMSNNSLSGSTPESIGSLRTVKFLVLRNNYLSGKLPLSLKNCTFQE 597 (598)
Q Consensus 527 L~Ls~N~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~l~~l~~L~~L~l~~n~l~g~~P~~~~~~~~L~ 597 (598)
++|.++ ++..-...|.++++|+.+++..| ++..-...|.++.+|+.+++..+ +. .+...|.+|++|+
T Consensus 325 i~lp~~-v~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~lp~~-~~-~~~~~F~~c~~L~ 391 (394)
T 4fs7_A 325 IDLPYL-VEEIGKRSFRGCTSLSNINFPLS-LRKIGANAFQGCINLKKVELPKR-LE-QYRYDFEDTTKFK 391 (394)
T ss_dssp ECCCTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTBTTCTTCCEEEEEGG-GG-GGGGGBCTTCEEE
T ss_pred EEeCCc-ccEEhHHhccCCCCCCEEEECcc-ccEehHHHhhCCCCCCEEEECCC-CE-EhhheecCCCCCc
Confidence 999754 66445678899999999999877 66555678999999999999765 33 4566788888876
|
| >1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 | Back alignment and structure |
|---|
Probab=99.36 E-value=2.2e-12 Score=115.33 Aligned_cols=131 Identities=18% Similarity=0.160 Sum_probs=76.3
Q ss_pred cCCCCCcEEEcCCCCCCCCcccchHhhhcC-CCCCEEEcCCCCCCCCCCCCCcCCCCCccEEEccCCCCCCCcchhhhcC
Q 037325 185 SGLSSLVYFNLGGADLSKAGAYWLEVFNKL-HSFVELHLPNCNLPSLPLSFPSLNFASLQVLDLSNNDFNSTTPHWLFNI 263 (598)
Q Consensus 185 ~~l~~L~~L~l~~n~~~~~~~~~~~~~~~l-~~L~~L~l~~~~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l 263 (598)
.++++|++|++++|.+.... . +..+ ++|++|++++|.++++ ..+..+++|++|++++|.+++..+..+..+
T Consensus 16 ~~~~~L~~L~l~~n~l~~i~----~-~~~~~~~L~~L~Ls~N~l~~~---~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l 87 (176)
T 1a9n_A 16 TNAVRDRELDLRGYKIPVIE----N-LGATLDQFDAIDFSDNEIRKL---DGFPLLRRLKTLLVNNNRICRIGEGLDQAL 87 (176)
T ss_dssp ECTTSCEEEECTTSCCCSCC----C-GGGGTTCCSEEECCSSCCCEE---CCCCCCSSCCEEECCSSCCCEECSCHHHHC
T ss_pred CCcCCceEEEeeCCCCchhH----H-hhhcCCCCCEEECCCCCCCcc---cccccCCCCCEEECCCCcccccCcchhhcC
Confidence 34455555555555555431 1 2222 3666666666666654 234556677777777777765444445667
Q ss_pred CCCCEEEccCCcccccCCc--cccCCCCccEEECcCCCcCccccch----hhcCCCCCCEEecccccCC
Q 037325 264 TSLLCLDLGSNDLQGDIPD--GFASLNSLQELDLSGNSFLGGQLSR----NLGKLCNLRTMILSRNNIS 326 (598)
Q Consensus 264 ~~L~~L~l~~n~l~~~~~~--~l~~l~~L~~L~l~~n~~~~~~~~~----~l~~l~~L~~L~l~~n~l~ 326 (598)
++|++|++++|.+. .+|. .+..+++|+.|++++|++ . .+|. .+..+++|+.|++++|...
T Consensus 88 ~~L~~L~L~~N~i~-~~~~~~~l~~l~~L~~L~l~~N~i-~-~~~~~~~~~~~~l~~L~~Ld~~~n~~~ 153 (176)
T 1a9n_A 88 PDLTELILTNNSLV-ELGDLDPLASLKSLTYLCILRNPV-T-NKKHYRLYVIYKVPQVRVLDFQKVKLK 153 (176)
T ss_dssp TTCCEEECCSCCCC-CGGGGGGGGGCTTCCEEECCSSGG-G-GSTTHHHHHHHHCTTCSEETTEECCHH
T ss_pred CCCCEEECCCCcCC-cchhhHhhhcCCCCCEEEecCCCC-C-CcHhHHHHHHHHCCccceeCCCcCCHH
Confidence 77777777777664 3443 566666777777777763 2 3333 3566666666666666443
|
| >1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A | Back alignment and structure |
|---|
Probab=99.35 E-value=1.8e-14 Score=131.72 Aligned_cols=128 Identities=23% Similarity=0.243 Sum_probs=76.2
Q ss_pred hhhhcCCCCCEEEccCCcccccCCccccCCCCccEEECcCCCcCccccchhhcCCCCCCEEecccccCCcccchhhhCCC
Q 037325 258 HWLFNITSLLCLDLGSNDLQGDIPDGFASLNSLQELDLSGNSFLGGQLSRNLGKLCNLRTMILSRNNISSEVSDFLDGLS 337 (598)
Q Consensus 258 ~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~ 337 (598)
..+..+++|++|++++|.+++ +| .+..+++|++|++++|.+ . .+|..+..+++|++|++++|++++. + .+..++
T Consensus 42 ~~~~~l~~L~~L~ls~n~l~~-l~-~~~~l~~L~~L~l~~n~l-~-~l~~~~~~~~~L~~L~L~~N~l~~l-~-~~~~l~ 115 (198)
T 1ds9_A 42 ATLSTLKACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLI-K-KIENLDAVADTLEELWISYNQIASL-S-GIEKLV 115 (198)
T ss_dssp HHHHHTTTCSEEECSEEEESC-CC-CHHHHTTCCEEEEEEEEE-C-SCSSHHHHHHHCSEEEEEEEECCCH-H-HHHHHH
T ss_pred HHHhcCCCCCEEECCCCCCcc-cc-ccccCCCCCEEECCCCCc-c-cccchhhcCCcCCEEECcCCcCCcC-C-ccccCC
Confidence 366777777777777777764 45 566667777777777763 2 4555555556666666666666653 2 344444
Q ss_pred CCCCCCCccEEEccCccccccCc-cccCCCCCCCEEEccCCcCCccchh----------hccCCCCCCEEe
Q 037325 338 ECTNSILLEKLELRFNQFTGILP-ISLGSLKNLRHLVLWQNSFLGSIPP----------SIGNLTLLKELY 397 (598)
Q Consensus 338 ~~~~~~~L~~L~Ls~n~l~~~~~-~~l~~l~~L~~L~ls~n~l~~~~~~----------~l~~l~~L~~L~ 397 (598)
+|++|++++|.+++..+ ..+..+++|++|++++|++.+..|. .+..+++|+.|+
T Consensus 116 ------~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~l~~L~~Ld 180 (198)
T 1ds9_A 116 ------NLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD 180 (198)
T ss_dssp ------HSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHHHHTTTTHHHHHHHHHHHCSSCSEEC
T ss_pred ------CCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCccccccccccchHHHHHHHHHhCCCcEEEC
Confidence 56666666666654222 3455666666666666666544332 144555555554
|
| >4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=99.33 E-value=4.5e-11 Score=121.72 Aligned_cols=53 Identities=11% Similarity=0.078 Sum_probs=39.7
Q ss_pred ccCCCCeEeCcCCccccccchhccCCCCCCEEECCCCcCccccchhccCCCCCCEE
Q 037325 520 NLKQLITLVISNNNLSGEIPLLFSNISFLYILDMSNNSLSGSTPESIGSLRTVKFL 575 (598)
Q Consensus 520 ~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~l~~l~~L~~L 575 (598)
.+++|+.+++..+ ++..-...|.++++|+.+++..+ ++ .+...|.++++|+.+
T Consensus 341 ~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~lp~~-~~-~~~~~F~~c~~L~~I 393 (394)
T 4fs7_A 341 GCTSLSNINFPLS-LRKIGANAFQGCINLKKVELPKR-LE-QYRYDFEDTTKFKWI 393 (394)
T ss_dssp TCTTCCEECCCTT-CCEECTTTBTTCTTCCEEEEEGG-GG-GGGGGBCTTCEEEEE
T ss_pred CCCCCCEEEECcc-ccEehHHHhhCCCCCCEEEECCC-CE-EhhheecCCCCCcEE
Confidence 3788999999876 66455678889999999999765 33 345678888877765
|
| >3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D | Back alignment and structure |
|---|
Probab=99.28 E-value=1.2e-11 Score=109.79 Aligned_cols=96 Identities=21% Similarity=0.226 Sum_probs=85.4
Q ss_pred CCcEEEccCCcccccCCchhhcccCCCCCccccCCCCeEeCcCCccccccchhccCCCCCCEEECCCCcCccccchhccC
Q 037325 489 NVTKLYLRDNSFSGLIPNDIGQNLPFLTDLGNLKQLITLVISNNNLSGEIPLLFSNISFLYILDMSNNSLSGSTPESIGS 568 (598)
Q Consensus 489 ~L~~L~ls~n~l~~~~p~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~l~~ 568 (598)
+.+.+++++|.++ .+|..+ .+.|+.|+|++|.|++..|..|.++++|++|+|++|++++..|..|.+
T Consensus 10 ~~~~l~~s~n~l~-~ip~~~------------~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~ 76 (170)
T 3g39_A 10 SGTTVDCSGKSLA-SVPTGI------------PTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDK 76 (170)
T ss_dssp ETTEEECTTSCCS-SCCSCC------------CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTT
T ss_pred CCCEEEeCCCCcC-ccCccC------------CCCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccC
Confidence 5689999999998 578665 468999999999999888999999999999999999999777777899
Q ss_pred CCCCCEEEccCCCCcccCCcCccCcCCCC
Q 037325 569 LRTVKFLVLRNNYLSGKLPLSLKNCTFQE 597 (598)
Q Consensus 569 l~~L~~L~l~~n~l~g~~P~~~~~~~~L~ 597 (598)
+++|++|++++|++++..|..+..+++|+
T Consensus 77 l~~L~~L~L~~N~l~~~~~~~~~~l~~L~ 105 (170)
T 3g39_A 77 LTQLTQLSLNDNQLKSIPRGAFDNLKSLT 105 (170)
T ss_dssp CTTCCEEECCSSCCCCCCTTTTTTCTTCC
T ss_pred CCCCCEEECCCCccCEeCHHHhcCCCCCC
Confidence 99999999999999976666788888775
|
| >3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.27 E-value=4.5e-13 Score=134.61 Aligned_cols=75 Identities=16% Similarity=0.149 Sum_probs=31.5
Q ss_pred CCCCCCEEEccCCcCCcc----chhhccCCCCCCEEeCcCCcCCcccCCCchhhhcCCCCCCEEEccCccCccccchHH
Q 037325 365 SLKNLRHLVLWQNSFLGS----IPPSIGNLTLLKELYLASNQMNGQKISDSYQHLKNQTELRTLVLNKARISDTISDWF 439 (598)
Q Consensus 365 ~l~~L~~L~ls~n~l~~~----~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~ 439 (598)
.+++|++|++++|.+.+. ++..+...++|++|++++|.+++.........+...++|++|++++|.+++.....+
T Consensus 181 ~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~l~~~L~~~~~L~~L~Ls~N~i~~~g~~~L 259 (372)
T 3un9_A 181 GNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALALARAAREHPSLELLHLYFNELSSEGRQVL 259 (372)
T ss_dssp TCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHHHHHHHHHCSSCCEEECTTSSCCHHHHHHH
T ss_pred cCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHHHHHHHHhCCCCCEEeccCCCCCHHHHHHH
Confidence 344444444444444322 123334444455555555544432211111223344445555555555544443333
|
| >3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.27 E-value=4.2e-13 Score=134.82 Aligned_cols=93 Identities=17% Similarity=0.176 Sum_probs=46.3
Q ss_pred CCCCCEEEccCCcCCcc----chhhccCCCCCCEEeCcCCcCCcccCCCchhhhcCCCCCCEEEccCccCccccchHHHh
Q 037325 366 LKNLRHLVLWQNSFLGS----IPPSIGNLTLLKELYLASNQMNGQKISDSYQHLKNQTELRTLVLNKARISDTISDWFWQ 441 (598)
Q Consensus 366 l~~L~~L~ls~n~l~~~----~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~ 441 (598)
.++|+.|++++|.+++. ++..+...++|++|++++|.+++..+......+...++|+.|++++|.+++.....+..
T Consensus 154 ~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~l~~ 233 (372)
T 3un9_A 154 QCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALALAR 233 (372)
T ss_dssp TCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHHHHH
T ss_pred CCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHHHHH
Confidence 34555555555555432 23333455566666666666554321111233445556666666666665443332221
Q ss_pred ---cCCCCCEEEccCCcCcc
Q 037325 442 ---LSLTLDELDVAYNELRG 458 (598)
Q Consensus 442 ---~~~~L~~L~ls~n~~~~ 458 (598)
..+.|++|++++|.++.
T Consensus 234 ~L~~~~~L~~L~Ls~N~i~~ 253 (372)
T 3un9_A 234 AAREHPSLELLHLYFNELSS 253 (372)
T ss_dssp HHHHCSSCCEEECTTSSCCH
T ss_pred HHHhCCCCCEEeccCCCCCH
Confidence 13556666666666554
|
| >2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus} | Back alignment and structure |
|---|
Probab=99.25 E-value=2.7e-11 Score=107.82 Aligned_cols=96 Identities=19% Similarity=0.195 Sum_probs=83.5
Q ss_pred CCcEEEccCCcccccCCchhhcccCCCCCccccCCCCeEeCcCCccccccchhccCCCCCCEEECCCCcCccccchhccC
Q 037325 489 NVTKLYLRDNSFSGLIPNDIGQNLPFLTDLGNLKQLITLVISNNNLSGEIPLLFSNISFLYILDMSNNSLSGSTPESIGS 568 (598)
Q Consensus 489 ~L~~L~ls~n~l~~~~p~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~l~~ 568 (598)
.-+.+++++|+++ .+|..+ .+.|+.|+|++|.+++..|..|+++++|++|+|++|++++..+..|.+
T Consensus 13 ~~~~l~~~~n~l~-~iP~~~------------~~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~ 79 (174)
T 2r9u_A 13 DQTLVNCQNIRLA-SVPAGI------------PTDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDK 79 (174)
T ss_dssp CSSEEECCSSCCS-SCCSCC------------CTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTT
T ss_pred CCcEEEeCCCCCC-ccCCCc------------CCCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCC
Confidence 3478999999997 788765 368999999999999888999999999999999999999766666799
Q ss_pred CCCCCEEEccCCCCcccCCcCccCcCCCC
Q 037325 569 LRTVKFLVLRNNYLSGKLPLSLKNCTFQE 597 (598)
Q Consensus 569 l~~L~~L~l~~n~l~g~~P~~~~~~~~L~ 597 (598)
+++|++|++++|++++..|..+..+++|+
T Consensus 80 l~~L~~L~L~~N~l~~l~~~~~~~l~~L~ 108 (174)
T 2r9u_A 80 LTQLTQLDLNDNHLKSIPRGAFDNLKSLT 108 (174)
T ss_dssp CTTCCEEECCSSCCCCCCTTTTTTCTTCS
T ss_pred cchhhEEECCCCccceeCHHHhccccCCC
Confidence 99999999999999965555588888775
|
| >2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 | Back alignment and structure |
|---|
Probab=99.12 E-value=2.5e-10 Score=114.11 Aligned_cols=98 Identities=22% Similarity=0.177 Sum_probs=79.8
Q ss_pred CcceecCccccCCCCCCEEeCCC-CCCCCCCcchhccCCCCCCEEECcCCCCCcccchhccCCCCCCEEEccCCCCCCCc
Q 037325 100 ELGGEISPSLLQLKDLEYLDLSM-NNFTGFQVPEFIGSLKELRYLNLSGSFFSGTIPQTLGNLSNLLYLDLNNFLDQSNQ 178 (598)
Q Consensus 100 ~l~~~~~~~l~~l~~L~~L~Ls~-n~l~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~~~~~~ 178 (598)
++++ +|. +..+++|++|+|++ |.+++. .+..|..+++|++|+|++|++++..|..|.++++|++|+|++|.+....
T Consensus 20 ~l~~-ip~-l~~~~~L~~L~l~~~n~l~~~-~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~ 96 (347)
T 2ifg_A 20 ALDS-LHH-LPGAENLTELYIENQQHLQHL-ELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNALESLS 96 (347)
T ss_dssp CCTT-TTT-SCSCSCCSEEECCSCSSCCEE-CGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSSCCSCCC
T ss_pred CCCc-cCC-CCCCCCeeEEEccCCCCCCCc-ChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCCccceeC
Confidence 4554 777 99999999999996 999965 5678999999999999999999888888999999999999998875433
Q ss_pred cChhhhcCCCCCcEEEcCCCCCCCC
Q 037325 179 IDLEWLSGLSSLVYFNLGGADLSKA 203 (598)
Q Consensus 179 ~~~~~~~~l~~L~~L~l~~n~~~~~ 203 (598)
. ..+..++ |+.|++.+|.+...
T Consensus 97 ~--~~~~~~~-L~~l~l~~N~~~c~ 118 (347)
T 2ifg_A 97 W--KTVQGLS-LQELVLSGNPLHCS 118 (347)
T ss_dssp S--TTTCSCC-CCEEECCSSCCCCC
T ss_pred H--HHcccCC-ceEEEeeCCCccCC
Confidence 2 2344444 88888888887654
|
| >2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 | Back alignment and structure |
|---|
Probab=99.08 E-value=3.2e-10 Score=113.37 Aligned_cols=85 Identities=28% Similarity=0.312 Sum_probs=57.8
Q ss_pred cCCcEEEccC-CcccccCCchhhcccCCCCCccccCCCCeEeCcCCccccccchhccCCCCCCEEECCCCcCccccchhc
Q 037325 488 FNVTKLYLRD-NSFSGLIPNDIGQNLPFLTDLGNLKQLITLVISNNNLSGEIPLLFSNISFLYILDMSNNSLSGSTPESI 566 (598)
Q Consensus 488 ~~L~~L~ls~-n~l~~~~p~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~l 566 (598)
++|+.|+|++ |+|++..|..|.. +++|+.|+|++|+|++..|..|+++++|+.|+|++|+|++..|..+
T Consensus 31 ~~L~~L~l~~~n~l~~~~~~~~~~----------l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~ 100 (347)
T 2ifg_A 31 ENLTELYIENQQHLQHLELRDLRG----------LGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNALESLSWKTV 100 (347)
T ss_dssp SCCSEEECCSCSSCCEECGGGSCS----------CCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSSCCSCCCSTTT
T ss_pred CCeeEEEccCCCCCCCcChhHhcc----------ccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCCccceeCHHHc
Confidence 3567777774 7776555555555 6777777777777777667777777777777777777775444445
Q ss_pred cCCCCCCEEEccCCCCc
Q 037325 567 GSLRTVKFLVLRNNYLS 583 (598)
Q Consensus 567 ~~l~~L~~L~l~~n~l~ 583 (598)
..++ |+.|++.+|++.
T Consensus 101 ~~~~-L~~l~l~~N~~~ 116 (347)
T 2ifg_A 101 QGLS-LQELVLSGNPLH 116 (347)
T ss_dssp CSCC-CCEEECCSSCCC
T ss_pred ccCC-ceEEEeeCCCcc
Confidence 5444 777777777765
|
| >4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165} | Back alignment and structure |
|---|
Probab=99.08 E-value=1.2e-08 Score=103.80 Aligned_cols=318 Identities=11% Similarity=0.066 Sum_probs=187.5
Q ss_pred CccccCCC-CCCEEeCCCCCCCCCCcchhccCCCCCCEEECcCCC---CCcccchhccCCCCCCEEEccCCCCCCCccCh
Q 037325 106 SPSLLQLK-DLEYLDLSMNNFTGFQVPEFIGSLKELRYLNLSGSF---FSGTIPQTLGNLSNLLYLDLNNFLDQSNQIDL 181 (598)
Q Consensus 106 ~~~l~~l~-~L~~L~Ls~n~l~~~~~p~~~~~l~~L~~L~L~~n~---l~~~~p~~l~~l~~L~~L~L~~n~~~~~~~~~ 181 (598)
..+|.+++ .|+.+.+..+ ++.+ -..+|.++.+|+.+.+..+. ++..-...|..+.+|+.+.+..+ ......
T Consensus 56 ~~aF~~~~~~L~sI~iP~s-vt~I-g~~AF~~C~~L~~i~~~~n~p~~l~~Ig~~aF~~c~~L~~i~~~~~---~~~I~~ 130 (394)
T 4gt6_A 56 DRVFCNYKYVLTSVQIPDT-VTEI-GSNAFYNCTSLKRVTIQDNKPSCVKKIGRQAFMFCSELTDIPILDS---VTEIDS 130 (394)
T ss_dssp TTTTTTCCSCCCEEEECTT-CCEE-CTTTTTTCTTCCEEEEGGGCCCCCCEECTTTTTTCTTCCBCGGGTT---CSEECT
T ss_pred HhhccCCCCcCEEEEECCC-eeEE-hHHHhhCCccCceEeecCCCCCeeeEechhhchhcccceeeccCCc---cceehh
Confidence 45677774 5888888754 4433 34568888999999887763 44333456778888888777653 333344
Q ss_pred hhhcCCCCCcEEEcCCCCCCCCcccchHhhhcCCCCCEEEcCCCCCCCCCCCCCcCCCCCccEEEccCCCCCCCcchhhh
Q 037325 182 EWLSGLSSLVYFNLGGADLSKAGAYWLEVFNKLHSFVELHLPNCNLPSLPLSFPSLNFASLQVLDLSNNDFNSTTPHWLF 261 (598)
Q Consensus 182 ~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~ 261 (598)
..+.++.+|+.+.+..+. ..+. ...|..+..|+.+.+.++ ++.+.. ..+. ..+|+.+.+..+. .......+.
T Consensus 131 ~aF~~c~~L~~i~lp~~~-~~I~---~~~F~~c~~L~~i~~~~~-~~~I~~-~aF~-~~~l~~i~ip~~~-~~i~~~af~ 202 (394)
T 4gt6_A 131 EAFHHCEELDTVTIPEGV-TSVA---DGMFSYCYSLHTVTLPDS-VTAIEE-RAFT-GTALTQIHIPAKV-TRIGTNAFS 202 (394)
T ss_dssp TTTTTCTTCCEEECCTTC-CEEC---TTTTTTCTTCCEEECCTT-CCEECT-TTTT-TCCCSEEEECTTC-CEECTTTTT
T ss_pred hhhhhhccccccccccee-eeec---ccceecccccccccccce-eeEecc-cccc-ccceeEEEECCcc-cccccchhh
Confidence 567888889988886543 2222 356778888888888754 444433 3333 3568888876542 223445566
Q ss_pred cCCCCCEEEccCCcccccCCcc-------------ccCCCCccEEECcCCCcCccccchhhcCCCCCCEEecccccCCcc
Q 037325 262 NITSLLCLDLGSNDLQGDIPDG-------------FASLNSLQELDLSGNSFLGGQLSRNLGKLCNLRTMILSRNNISSE 328 (598)
Q Consensus 262 ~l~~L~~L~l~~n~l~~~~~~~-------------l~~l~~L~~L~l~~n~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~ 328 (598)
.+.+++................ +.....+..+.+... ....-...|..+..|+.+.+..+. ...
T Consensus 203 ~c~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ip~~--v~~i~~~aF~~c~~L~~i~lp~~~-~~I 279 (394)
T 4gt6_A 203 ECFALSTITSDSESYPAIDNVLYEKSANGDYALIRYPSQREDPAFKIPNG--VARIETHAFDSCAYLASVKMPDSV-VSI 279 (394)
T ss_dssp TCTTCCEEEECCSSSCBSSSCEEEECTTSCEEEEECCTTCCCSEEECCTT--EEEECTTTTTTCSSCCEEECCTTC-CEE
T ss_pred hccccceecccccccccccceeecccccccccccccccccccceEEcCCc--ceEcccceeeecccccEEeccccc-cee
Confidence 7777777766554332110000 111223444444332 122233457778888888886542 333
Q ss_pred cchhhhCCCCCCCCCCccEEEccCccccccCccccCCCCCCCEEEccCCcCCccchhhccCCCCCCEEeCcCCcCCcccC
Q 037325 329 VSDFLDGLSECTNSILLEKLELRFNQFTGILPISLGSLKNLRHLVLWQNSFLGSIPPSIGNLTLLKELYLASNQMNGQKI 408 (598)
Q Consensus 329 ~~~~~~~l~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~ls~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~ 408 (598)
....|.... .|+.+.+.. .++......|.++.+|+.+++..+ ++..-..+|.++.+|+.+.+..+ ++...
T Consensus 280 ~~~aF~~c~------~L~~i~l~~-~i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~C~~L~~i~ip~s-v~~I~- 349 (394)
T 4gt6_A 280 GTGAFMNCP------ALQDIEFSS-RITELPESVFAGCISLKSIDIPEG-ITQILDDAFAGCEQLERIAIPSS-VTKIP- 349 (394)
T ss_dssp CTTTTTTCT------TCCEEECCT-TCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEECTT-CCBCC-
T ss_pred cCccccccc------ccccccCCC-cccccCceeecCCCCcCEEEeCCc-ccEehHhHhhCCCCCCEEEECcc-cCEEh-
Confidence 344455555 788888863 455455567888889999988754 44344557888889999988654 33221
Q ss_pred CCchhhhcCCCCCCEEEccCccCccccchHHHhcCCCCCEEEccCCcC
Q 037325 409 SDSYQHLKNQTELRTLVLNKARISDTISDWFWQLSLTLDELDVAYNEL 456 (598)
Q Consensus 409 ~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~ls~n~~ 456 (598)
. .++.+|++|+.+++.++.... ..+. .+..|+.+.+..+.+
T Consensus 350 ~---~aF~~C~~L~~i~~~~~~~~~---~~~~-~~~~L~~i~i~~~~~ 390 (394)
T 4gt6_A 350 E---SAFSNCTALNNIEYSGSRSQW---NAIS-TDSGLQNLPVAPGSI 390 (394)
T ss_dssp G---GGGTTCTTCCEEEESSCHHHH---HTCB-CCCCC----------
T ss_pred H---hHhhCCCCCCEEEECCceeeh---hhhh-ccCCCCEEEeCCCCE
Confidence 1 357888999999988875321 1222 256788887766544
|
| >2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=99.00 E-value=5.8e-10 Score=110.94 Aligned_cols=161 Identities=14% Similarity=0.155 Sum_probs=93.0
Q ss_pred cccCCCCccEEECcCCCcCccccchhhcCCCCCCEEecccccCCcccchhhh--CCCCCCCCCCccEEEccC--cccccc
Q 037325 283 GFASLNSLQELDLSGNSFLGGQLSRNLGKLCNLRTMILSRNNISSEVSDFLD--GLSECTNSILLEKLELRF--NQFTGI 358 (598)
Q Consensus 283 ~l~~l~~L~~L~l~~n~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~--~l~~~~~~~~L~~L~Ls~--n~l~~~ 358 (598)
.+..+|+|+.|++++|. . ..++. + ..++|+.|++..+.+.......+. .++ +|++|+|+. +...+.
T Consensus 167 ll~~~P~L~~L~L~g~~-~-l~l~~-~-~~~~L~~L~L~~~~l~~~~l~~l~~~~lp------~L~~L~L~~~~~~~~~~ 236 (362)
T 2ra8_A 167 VLDAMPLLNNLKIKGTN-N-LSIGK-K-PRPNLKSLEIISGGLPDSVVEDILGSDLP------NLEKLVLYVGVEDYGFD 236 (362)
T ss_dssp HHHTCTTCCEEEEECCB-T-CBCCS-C-BCTTCSEEEEECSBCCHHHHHHHHHSBCT------TCCEEEEECBCGGGTCC
T ss_pred HHhcCCCCcEEEEeCCC-C-ceecc-c-cCCCCcEEEEecCCCChHHHHHHHHccCC------CCcEEEEeccccccccc
Confidence 34455666666666652 1 11222 2 256777777776666554433333 344 677777642 111111
Q ss_pred -----Ccccc--CCCCCCCEEEccCCcCCccchhhcc---CCCCCCEEeCcCCcCCcccCCCchhhhcCCCCCCEEEccC
Q 037325 359 -----LPISL--GSLKNLRHLVLWQNSFLGSIPPSIG---NLTLLKELYLASNQMNGQKISDSYQHLKNQTELRTLVLNK 428 (598)
Q Consensus 359 -----~~~~l--~~l~~L~~L~ls~n~l~~~~~~~l~---~l~~L~~L~l~~n~l~~~~~~~~~~~l~~~~~L~~L~l~~ 428 (598)
+...+ ..+++|+.|++++|.+.+..+..+. .+++|++|+++.|.+++.........+..+++|+.|++++
T Consensus 237 ~~~~~l~~~l~~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~ 316 (362)
T 2ra8_A 237 GDMNVFRPLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKY 316 (362)
T ss_dssp SCGGGTGGGSCTTTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCS
T ss_pred hhHHHHHHHHhcCCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCC
Confidence 11122 2468888888888887754443332 4678888888888877643111122335567888888888
Q ss_pred ccCccccchHHHhcCCCCCEEEccCCc
Q 037325 429 ARISDTISDWFWQLSLTLDELDVAYNE 455 (598)
Q Consensus 429 n~l~~~~~~~~~~~~~~L~~L~ls~n~ 455 (598)
|.+++.....+...+ ...++++.++
T Consensus 317 n~i~d~~~~~l~~al--g~~~~~~~~~ 341 (362)
T 2ra8_A 317 NYLSDEMKKELQKSL--PMKIDVSDSQ 341 (362)
T ss_dssp BBCCHHHHHHHHHHC--CSEEECCSBC
T ss_pred CcCCHHHHHHHHHHc--CCEEEecCCc
Confidence 888776666655422 3567777765
|
| >4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165} | Back alignment and structure |
|---|
Probab=98.96 E-value=1.1e-07 Score=96.46 Aligned_cols=155 Identities=12% Similarity=0.088 Sum_probs=82.3
Q ss_pred hccCCC-CCCEEECcCCCCCcccchhccCCCCCCEEEccCCC-CCCCccChhhhcCCCCCcEEEcCCCCCCCCcccchHh
Q 037325 133 FIGSLK-ELRYLNLSGSFFSGTIPQTLGNLSNLLYLDLNNFL-DQSNQIDLEWLSGLSSLVYFNLGGADLSKAGAYWLEV 210 (598)
Q Consensus 133 ~~~~l~-~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~-~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~ 210 (598)
+|.+++ .|+.+.+..+ ++..-..+|.++.+|+.+.+..+. ..+.......|.++.+|+.+.+..+ +..+. ...
T Consensus 58 aF~~~~~~L~sI~iP~s-vt~Ig~~AF~~C~~L~~i~~~~n~p~~l~~Ig~~aF~~c~~L~~i~~~~~-~~~I~---~~a 132 (394)
T 4gt6_A 58 VFCNYKYVLTSVQIPDT-VTEIGSNAFYNCTSLKRVTIQDNKPSCVKKIGRQAFMFCSELTDIPILDS-VTEID---SEA 132 (394)
T ss_dssp TTTTCCSCCCEEEECTT-CCEECTTTTTTCTTCCEEEEGGGCCCCCCEECTTTTTTCTTCCBCGGGTT-CSEEC---TTT
T ss_pred hccCCCCcCEEEEECCC-eeEEhHHHhhCCccCceEeecCCCCCeeeEechhhchhcccceeeccCCc-cceeh---hhh
Confidence 455653 5888888654 553445668888888888887652 2344444556777777776665543 22222 345
Q ss_pred hhcCCCCCEEEcCCCCCCCCCCCCCcCCCCCccEEEccCCCCCCCcchhhhcCCCCCEEEccCCcccccCCccccCCCCc
Q 037325 211 FNKLHSFVELHLPNCNLPSLPLSFPSLNFASLQVLDLSNNDFNSTTPHWLFNITSLLCLDLGSNDLQGDIPDGFASLNSL 290 (598)
Q Consensus 211 ~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L 290 (598)
|..+.+|+.+.+... +..+.. ..+..+.+|+.+.+..+ ++......+. ..+|+.+.+..+... .....+..+.++
T Consensus 133 F~~c~~L~~i~lp~~-~~~I~~-~~F~~c~~L~~i~~~~~-~~~I~~~aF~-~~~l~~i~ip~~~~~-i~~~af~~c~~l 207 (394)
T 4gt6_A 133 FHHCEELDTVTIPEG-VTSVAD-GMFSYCYSLHTVTLPDS-VTAIEERAFT-GTALTQIHIPAKVTR-IGTNAFSECFAL 207 (394)
T ss_dssp TTTCTTCCEEECCTT-CCEECT-TTTTTCTTCCEEECCTT-CCEECTTTTT-TCCCSEEEECTTCCE-ECTTTTTTCTTC
T ss_pred hhhhcccccccccce-eeeecc-cceecccccccccccce-eeEecccccc-ccceeEEEECCcccc-cccchhhhcccc
Confidence 666666666666532 233332 44555566666666543 2222222232 244555555443221 223344455555
Q ss_pred cEEECcC
Q 037325 291 QELDLSG 297 (598)
Q Consensus 291 ~~L~l~~ 297 (598)
+......
T Consensus 208 ~~~~~~~ 214 (394)
T 4gt6_A 208 STITSDS 214 (394)
T ss_dssp CEEEECC
T ss_pred ceecccc
Confidence 5554443
|
| >2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=98.80 E-value=2.7e-09 Score=106.04 Aligned_cols=42 Identities=14% Similarity=0.196 Sum_probs=21.9
Q ss_pred ccccCCCCCCEEeCCCCCCCCC--------CcchhccCCCCCCEEECcCC
Q 037325 107 PSLLQLKDLEYLDLSMNNFTGF--------QVPEFIGSLKELRYLNLSGS 148 (598)
Q Consensus 107 ~~l~~l~~L~~L~Ls~n~l~~~--------~~p~~~~~l~~L~~L~L~~n 148 (598)
.++.++++|+.|.+........ .+...+..+|+|+.|+|++|
T Consensus 133 ~s~~~l~~L~~L~l~~~~~e~~~is~~~~~~L~~ll~~~P~L~~L~L~g~ 182 (362)
T 2ra8_A 133 ENKEKFAHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGT 182 (362)
T ss_dssp TTHHHHTTCSEEEECCCCTTTCCGGGCBCCBCHHHHHTCTTCCEEEEECC
T ss_pred HhhhhcchhhheeecCcchhhcccccccccCHHHHHhcCCCCcEEEEeCC
Confidence 3455677888887765432110 13333444555555555554
|
| >4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum} | Back alignment and structure |
|---|
Probab=98.62 E-value=4.3e-06 Score=84.25 Aligned_cols=130 Identities=12% Similarity=0.155 Sum_probs=59.6
Q ss_pred hhcCCCCCCEEecccccCCcccchhhhCCCCCCCCCCccEEEccCccccccCccccCCCCCCCEEEccCCcCCccchhhc
Q 037325 308 NLGKLCNLRTMILSRNNISSEVSDFLDGLSECTNSILLEKLELRFNQFTGILPISLGSLKNLRHLVLWQNSFLGSIPPSI 387 (598)
Q Consensus 308 ~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~ls~n~l~~~~~~~l 387 (598)
.+..+.+|+.+.+..+ +.......+.... .|+.+.+..+ ++......+..+.+|+.+.+..+ +.......+
T Consensus 212 ~f~~~~~l~~i~~~~~-~~~i~~~~f~~~~------~L~~i~lp~~-v~~I~~~aF~~~~~l~~i~l~~~-i~~i~~~aF 282 (379)
T 4h09_A 212 GFSYGKNLKKITITSG-VTTLGDGAFYGMK------ALDEIAIPKN-VTSIGSFLLQNCTALKTLNFYAK-VKTVPYLLC 282 (379)
T ss_dssp TTTTCSSCSEEECCTT-CCEECTTTTTTCS------SCCEEEECTT-CCEECTTTTTTCTTCCEEEECCC-CSEECTTTT
T ss_pred ccccccccceeeeccc-eeEEccccccCCc------cceEEEcCCC-ccEeCccccceeehhcccccccc-ceecccccc
Confidence 3444455555555332 2222223333333 4555555443 33333345555566666665433 332233345
Q ss_pred cCCCCCCEEeCcCCcCCcccCCCchhhhcCCCCCCEEEccCccCccccchHHHhcCCCCCEEEcc
Q 037325 388 GNLTLLKELYLASNQMNGQKISDSYQHLKNQTELRTLVLNKARISDTISDWFWQLSLTLDELDVA 452 (598)
Q Consensus 388 ~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~ls 452 (598)
.++.+|+.+.+.++.++... . ..+.+|.+|+.+.+..+ ++......|.. |.+|+.+.+.
T Consensus 283 ~~c~~L~~i~l~~~~i~~I~-~---~aF~~c~~L~~i~lp~~-l~~I~~~aF~~-C~~L~~i~ip 341 (379)
T 4h09_A 283 SGCSNLTKVVMDNSAIETLE-P---RVFMDCVKLSSVTLPTA-LKTIQVYAFKN-CKALSTISYP 341 (379)
T ss_dssp TTCTTCCEEEECCTTCCEEC-T---TTTTTCTTCCEEECCTT-CCEECTTTTTT-CTTCCCCCCC
T ss_pred ccccccccccccccccceeh-h---hhhcCCCCCCEEEcCcc-ccEEHHHHhhC-CCCCCEEEEC
Confidence 55666666666555444322 1 23455566666666433 33222223322 5555555553
|
| >4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum} | Back alignment and structure |
|---|
Probab=98.60 E-value=3.4e-06 Score=85.05 Aligned_cols=276 Identities=10% Similarity=0.016 Sum_probs=169.4
Q ss_pred CcceecCccccCCCCCCEEeCCCCCCCCCCcchhccCCCCCCEEECcCCCCCcccc-hhccCCCCCCEEEccCCCCCCCc
Q 037325 100 ELGGEISPSLLQLKDLEYLDLSMNNFTGFQVPEFIGSLKELRYLNLSGSFFSGTIP-QTLGNLSNLLYLDLNNFLDQSNQ 178 (598)
Q Consensus 100 ~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p-~~l~~l~~L~~L~L~~n~~~~~~ 178 (598)
+++..-..+|.+|.+|+.++|..+ ++.+ -..+|.++ +|+.+.+..+ +. .++ ..|.. .+|+++.+..+.. .
T Consensus 56 ~vt~Ig~~aF~~C~~L~~I~lp~~-v~~I-g~~aF~~c-~l~~i~~~~~-l~-~I~~~aF~~-~~L~~i~lp~~~~---~ 126 (379)
T 4h09_A 56 GITSIGEANFNSCYNMTKVTVAST-VTSI-GDGAFADT-KLQSYTGMER-VK-KFGDYVFQG-TDLDDFEFPGATT---E 126 (379)
T ss_dssp TEEEECTTTTTTCTTCCEEEECTT-CCEE-CTTTTTTC-CCCEEEECTT-CC-EECTTTTTT-CCCSEEECCTTCC---E
T ss_pred CccChHHHHhhCCCCCCEEEeCCc-ceEe-chhhhcCC-CCceEECCce-ee-Eeccceecc-CCcccccCCCccc---c
Confidence 566555678999999999999754 5532 23456665 6777777543 44 333 33444 4799998876422 2
Q ss_pred cChhhhcCCCCCcEEEcCCCCCCCCcccchHhhhcCCCCCEEEcCCCCCCCCCC-----------CCCcCCCCCccEEEc
Q 037325 179 IDLEWLSGLSSLVYFNLGGADLSKAGAYWLEVFNKLHSFVELHLPNCNLPSLPL-----------SFPSLNFASLQVLDL 247 (598)
Q Consensus 179 ~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~-----------~~~~~~l~~L~~L~L 247 (598)
.....+.++ .++.+.+..+ +.... ...+..+..++.+.+.......... ...+.....+..+.+
T Consensus 127 i~~~~F~~~-~l~~~~~~~~-v~~i~---~~~f~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 201 (379)
T 4h09_A 127 IGNYIFYNS-SVKRIVIPKS-VTTIK---DGIGYKAENLEKIEVSSNNKNYVAENYVLYNKNKTILESYPAAKTGTEFTI 201 (379)
T ss_dssp ECTTTTTTC-CCCEEEECTT-CCEEC---SCTTTTCTTCCEEEECTTCSSEEEETTEEEETTSSEEEECCTTCCCSEEEC
T ss_pred ccccccccc-eeeeeeccce-eeccc---cchhcccccccccccccccceeecccceecccccceecccccccccccccc
Confidence 222334444 4555555433 22222 3456677777777766543321110 011223344555555
Q ss_pred cCCCCCCCcchhhhcCCCCCEEEccCCcccccCCccccCCCCccEEECcCCCcCccccchhhcCCCCCCEEecccccCCc
Q 037325 248 SNNDFNSTTPHWLFNITSLLCLDLGSNDLQGDIPDGFASLNSLQELDLSGNSFLGGQLSRNLGKLCNLRTMILSRNNISS 327 (598)
Q Consensus 248 ~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~l~~l~~L~~L~l~~n~l~~ 327 (598)
.... .......+..+.+++.+.+..+ +.......+..+..|+.+.+..+ ....-...+..+.+|+.+.+..+ +..
T Consensus 202 ~~~~-~~i~~~~f~~~~~l~~i~~~~~-~~~i~~~~f~~~~~L~~i~lp~~--v~~I~~~aF~~~~~l~~i~l~~~-i~~ 276 (379)
T 4h09_A 202 PSTV-KTVTAYGFSYGKNLKKITITSG-VTTLGDGAFYGMKALDEIAIPKN--VTSIGSFLLQNCTALKTLNFYAK-VKT 276 (379)
T ss_dssp CTTC-CEECTTTTTTCSSCSEEECCTT-CCEECTTTTTTCSSCCEEEECTT--CCEECTTTTTTCTTCCEEEECCC-CSE
T ss_pred ccce-eEEeecccccccccceeeeccc-eeEEccccccCCccceEEEcCCC--ccEeCccccceeehhcccccccc-cee
Confidence 4332 2233344666778888887654 33234456777888888888765 23333456778888888888543 444
Q ss_pred ccchhhhCCCCCCCCCCccEEEccCccccccCccccCCCCCCCEEEccCCcCCccchhhccCCCCCCEEeCcCC
Q 037325 328 EVSDFLDGLSECTNSILLEKLELRFNQFTGILPISLGSLKNLRHLVLWQNSFLGSIPPSIGNLTLLKELYLASN 401 (598)
Q Consensus 328 ~~~~~~~~l~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~ls~n~l~~~~~~~l~~l~~L~~L~l~~n 401 (598)
.....|..+. +|+.+.+.++.++......|.++.+|+.+.+..+ ++..-..+|.++.+|+.+.+..+
T Consensus 277 i~~~aF~~c~------~L~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~ip~~ 343 (379)
T 4h09_A 277 VPYLLCSGCS------NLTKVVMDNSAIETLEPRVFMDCVKLSSVTLPTA-LKTIQVYAFKNCKALSTISYPKS 343 (379)
T ss_dssp ECTTTTTTCT------TCCEEEECCTTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCCCCCCTT
T ss_pred cccccccccc------ccccccccccccceehhhhhcCCCCCCEEEcCcc-ccEEHHHHhhCCCCCCEEEECCc
Confidence 4455566655 7999999888787666778888999999998654 55444567888899999988654
|
| >1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1 | Back alignment and structure |
|---|
Probab=98.50 E-value=5.9e-08 Score=86.91 Aligned_cols=98 Identities=18% Similarity=0.125 Sum_probs=44.5
Q ss_pred cchhhcCCCCCCEEecccc-cCCcccchhhhCCCCCCCCCCccEEEccCccccccC----ccccCCCCCCCEEEccCCcC
Q 037325 305 LSRNLGKLCNLRTMILSRN-NISSEVSDFLDGLSECTNSILLEKLELRFNQFTGIL----PISLGSLKNLRHLVLWQNSF 379 (598)
Q Consensus 305 ~~~~l~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~~~~~~~L~~L~Ls~n~l~~~~----~~~l~~l~~L~~L~ls~n~l 379 (598)
+...+...++|++|++++| .+.......+...- ...++|++|++++|.+.... ...+...++|++|++++|.+
T Consensus 28 l~~~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L--~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i 105 (185)
T 1io0_A 28 LKRIQNNDPDLEEVNLNNIMNIPVPTLKACAEAL--KTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFI 105 (185)
T ss_dssp HHHHHTTCTTCCEEECTTCTTCCHHHHHHHHHHH--TTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCC
T ss_pred HHHHHhcCCCCCEEEecCCCCCCHHHHHHHHHHH--HhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcC
Confidence 3444556666777777766 66554333222110 00114555555555554321 22223334455555555554
Q ss_pred Ccc----chhhccCCCCCCEEeC--cCCcCC
Q 037325 380 LGS----IPPSIGNLTLLKELYL--ASNQMN 404 (598)
Q Consensus 380 ~~~----~~~~l~~l~~L~~L~l--~~n~l~ 404 (598)
.+. +...+...+.|++|++ ++|.+.
T Consensus 106 ~~~g~~~l~~~L~~n~~L~~L~L~~~~N~i~ 136 (185)
T 1io0_A 106 SGSGILALVEALQSNTSLIELRIDNQSQPLG 136 (185)
T ss_dssp CHHHHHHHHHGGGGCSSCCEEECCCCSSCCC
T ss_pred CHHHHHHHHHHHHhCCCceEEEecCCCCCCC
Confidence 432 2233344444555555 444444
|
| >1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1 | Back alignment and structure |
|---|
Probab=98.49 E-value=2.6e-08 Score=89.26 Aligned_cols=113 Identities=15% Similarity=0.128 Sum_probs=49.7
Q ss_pred CccEEEccCc-ccccc----CccccCCCCCCCEEEccCCcCCcc----chhhccCCCCCCEEeCcCCcCCcccCCCchhh
Q 037325 344 LLEKLELRFN-QFTGI----LPISLGSLKNLRHLVLWQNSFLGS----IPPSIGNLTLLKELYLASNQMNGQKISDSYQH 414 (598)
Q Consensus 344 ~L~~L~Ls~n-~l~~~----~~~~l~~l~~L~~L~ls~n~l~~~----~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~ 414 (598)
.|++|++++| .+... +...+...++|++|++++|.+.+. +...+...+.|++|++++|.|.+.........
T Consensus 37 ~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~~~l~~~ 116 (185)
T 1io0_A 37 DLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILALVEA 116 (185)
T ss_dssp TCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHHHHHG
T ss_pred CCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHHHHHHHH
Confidence 4555555555 44322 222333445555555555555432 22233334455555555555543322222233
Q ss_pred hcCCCCCCEEEc--cCccCccccchHHHh---cCCCCCEEEccCCcC
Q 037325 415 LKNQTELRTLVL--NKARISDTISDWFWQ---LSLTLDELDVAYNEL 456 (598)
Q Consensus 415 l~~~~~L~~L~l--~~n~l~~~~~~~~~~---~~~~L~~L~ls~n~~ 456 (598)
+...+.|++|++ ++|.+++.....+.. ..+.|++|++++|.+
T Consensus 117 L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i 163 (185)
T 1io0_A 117 LQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQ 163 (185)
T ss_dssp GGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSH
T ss_pred HHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCC
Confidence 444455555555 445554433222211 124455555555544
|
| >3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A | Back alignment and structure |
|---|
Probab=98.42 E-value=9.2e-08 Score=90.03 Aligned_cols=65 Identities=25% Similarity=0.407 Sum_probs=36.0
Q ss_pred cCCCCeEeCcCCcccc--ccchhccCCCCCCEEECCCCcCccccchhccCCC--CCCEEEccCCCCcccCC
Q 037325 521 LKQLITLVISNNNLSG--EIPLLFSNISFLYILDMSNNSLSGSTPESIGSLR--TVKFLVLRNNYLSGKLP 587 (598)
Q Consensus 521 l~~L~~L~Ls~N~l~~--~~p~~~~~l~~L~~L~ls~N~l~~~~p~~l~~l~--~L~~L~l~~n~l~g~~P 587 (598)
++.|++|+|++|.|++ .+|..+..+++|+.|+|++|++++. ..+..+. +|++|++++|++++.+|
T Consensus 169 l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~--~~l~~l~~l~L~~L~L~~Npl~~~~~ 237 (267)
T 3rw6_A 169 IPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE--RELDKIKGLKLEELWLDGNSLCDTFR 237 (267)
T ss_dssp CTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG--GGGGGGTTSCCSEEECTTSTTGGGCS
T ss_pred CCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc--hhhhhcccCCcceEEccCCcCccccC
Confidence 4556666666666655 3445555566666666666666543 2233333 56666666666665555
|
| >3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A | Back alignment and structure |
|---|
Probab=98.30 E-value=7.3e-07 Score=83.89 Aligned_cols=79 Identities=20% Similarity=0.119 Sum_probs=61.7
Q ss_pred CcCCcEEEccCCcccc--cCCchhhcccCCCCCccccCCCCeEeCcCCccccccchhccCCC--CCCEEECCCCcCcccc
Q 037325 487 SFNVTKLYLRDNSFSG--LIPNDIGQNLPFLTDLGNLKQLITLVISNNNLSGEIPLLFSNIS--FLYILDMSNNSLSGST 562 (598)
Q Consensus 487 ~~~L~~L~ls~n~l~~--~~p~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~--~L~~L~ls~N~l~~~~ 562 (598)
+++|+.|+|++|+|++ .+|..+.. +++|+.|+|++|.|++. ..+..++ +|++|+|++|.+.+.+
T Consensus 169 l~~L~~L~Ls~N~l~~l~~l~~~~~~----------l~~L~~L~Ls~N~i~~~--~~l~~l~~l~L~~L~L~~Npl~~~~ 236 (267)
T 3rw6_A 169 IPELLSLNLSNNRLYRLDDMSSIVQK----------APNLKILNLSGNELKSE--RELDKIKGLKLEELWLDGNSLCDTF 236 (267)
T ss_dssp CTTCCEEECTTSCCCCCGGGTTHHHH----------STTCCEEECTTSCCCSG--GGGGGGTTSCCSEEECTTSTTGGGC
T ss_pred CCCCCEEECCCCCCCCCccchhHHhh----------CCCCCEEECCCCccCCc--hhhhhcccCCcceEEccCCcCcccc
Confidence 5689999999999986 44555555 89999999999999864 2344444 8999999999999876
Q ss_pred ch-------hccCCCCCCEEEc
Q 037325 563 PE-------SIGSLRTVKFLVL 577 (598)
Q Consensus 563 p~-------~l~~l~~L~~L~l 577 (598)
|. .+..+++|+.||-
T Consensus 237 ~~~~~y~~~il~~~P~L~~LDg 258 (267)
T 3rw6_A 237 RDQSTYISAIRERFPKLLRLDG 258 (267)
T ss_dssp SSHHHHHHHHHHHCTTCCEESS
T ss_pred CcchhHHHHHHHHCcccCeECC
Confidence 63 3678899998863
|
| >3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A | Back alignment and structure |
|---|
Probab=98.17 E-value=1.2e-06 Score=76.38 Aligned_cols=86 Identities=12% Similarity=0.131 Sum_probs=63.1
Q ss_pred CccEEEccCccccccCccccCCCCCCCEEEccCCc-CCccchhhccCC----CCCCEEeCcCCc-CCcccCCCchhhhcC
Q 037325 344 LLEKLELRFNQFTGILPISLGSLKNLRHLVLWQNS-FLGSIPPSIGNL----TLLKELYLASNQ-MNGQKISDSYQHLKN 417 (598)
Q Consensus 344 ~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~ls~n~-l~~~~~~~l~~l----~~L~~L~l~~n~-l~~~~~~~~~~~l~~ 417 (598)
.|++||+++|.++...-..+..+++|+.|++++|. +++..-..+..+ ++|++|++++|. +++ ..+..+..
T Consensus 62 ~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD----~Gl~~L~~ 137 (176)
T 3e4g_A 62 KIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTD----KGIIALHH 137 (176)
T ss_dssp CEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCH----HHHHHGGG
T ss_pred eEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCH----HHHHHHhc
Confidence 58888888888877666667788888888888884 665554555554 468888888874 664 34556778
Q ss_pred CCCCCEEEccCcc-Ccc
Q 037325 418 QTELRTLVLNKAR-ISD 433 (598)
Q Consensus 418 ~~~L~~L~l~~n~-l~~ 433 (598)
+++|+.|++++|. +++
T Consensus 138 ~~~L~~L~L~~c~~Itd 154 (176)
T 3e4g_A 138 FRNLKYLFLSDLPGVKE 154 (176)
T ss_dssp CTTCCEEEEESCTTCCC
T ss_pred CCCCCEEECCCCCCCCc
Confidence 8888888888886 554
|
| >3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A | Back alignment and structure |
|---|
Probab=98.04 E-value=1.8e-06 Score=75.18 Aligned_cols=83 Identities=8% Similarity=0.156 Sum_probs=59.7
Q ss_pred CCcEEEccCCcccccCCchhhcccCCCCCccccCCCCeEeCcCCc-cccccchhccCC----CCCCEEECCCC-cCcccc
Q 037325 489 NVTKLYLRDNSFSGLIPNDIGQNLPFLTDLGNLKQLITLVISNNN-LSGEIPLLFSNI----SFLYILDMSNN-SLSGST 562 (598)
Q Consensus 489 ~L~~L~ls~n~l~~~~p~~~~~~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~p~~~~~l----~~L~~L~ls~N-~l~~~~ 562 (598)
.|+.||+++|.+++.--..+.. +++|+.|+|++|. +++.--..++.+ ++|++|+|++| +++..-
T Consensus 62 ~L~~LDLs~~~Itd~GL~~L~~----------~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~G 131 (176)
T 3e4g_A 62 KIQAIDATDSCIMSIGFDHMEG----------LQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKG 131 (176)
T ss_dssp CEEEEEEESCCCCGGGGGGGTT----------CSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHH
T ss_pred eEeEEeCcCCCccHHHHHHhcC----------CCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHH
Confidence 5778888888776544433433 7888888888884 776655566654 47888888887 477666
Q ss_pred chhccCCCCCCEEEccCCC
Q 037325 563 PESIGSLRTVKFLVLRNNY 581 (598)
Q Consensus 563 p~~l~~l~~L~~L~l~~n~ 581 (598)
-..+..+++|++|++++|+
T Consensus 132 l~~L~~~~~L~~L~L~~c~ 150 (176)
T 3e4g_A 132 IIALHHFRNLKYLFLSDLP 150 (176)
T ss_dssp HHHGGGCTTCCEEEEESCT
T ss_pred HHHHhcCCCCCEEECCCCC
Confidence 6667788888888888875
|
| >1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1 | Back alignment and structure |
|---|
Probab=97.63 E-value=3.8e-05 Score=68.16 Aligned_cols=63 Identities=13% Similarity=0.120 Sum_probs=27.8
Q ss_pred CCCCCEEEccCCcCCcc----chhhccCCCCCCEEeCcCCcCCcccCCCchhhhcCCCCCCEEEccC
Q 037325 366 LKNLRHLVLWQNSFLGS----IPPSIGNLTLLKELYLASNQMNGQKISDSYQHLKNQTELRTLVLNK 428 (598)
Q Consensus 366 l~~L~~L~ls~n~l~~~----~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~~~~L~~L~l~~ 428 (598)
-+.|+.|+|++|++.+. +.+.+...+.|++|+|++|.|.+.......+.+...+.|+.|+|++
T Consensus 69 N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~ala~aL~~N~tL~~L~L~n 135 (197)
T 1pgv_A 69 SKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARLLRSTLVTQSIVEFKADN 135 (197)
T ss_dssp CSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHHHHHTTTTCCCSEEECCC
T ss_pred CCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHHHHHHHhhCCceeEEECCC
Confidence 34444444444444322 2223334445555555555554433222233444444555555543
|
| >1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1 | Back alignment and structure |
|---|
Probab=97.42 E-value=8.4e-05 Score=65.92 Aligned_cols=93 Identities=9% Similarity=0.114 Sum_probs=66.2
Q ss_pred ccCCCCCCCEEEccCC-cCCcc----chhhccCCCCCCEEeCcCCcCCcccCCCchhhhcCCCCCCEEEccCccCccccc
Q 037325 362 SLGSLKNLRHLVLWQN-SFLGS----IPPSIGNLTLLKELYLASNQMNGQKISDSYQHLKNQTELRTLVLNKARISDTIS 436 (598)
Q Consensus 362 ~l~~l~~L~~L~ls~n-~l~~~----~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~ 436 (598)
.+..-+.|+.|++++| ++.+. +...+...+.|+.|+|++|.+.+.......+.+...+.|+.|+|++|+|++...
T Consensus 36 ll~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga 115 (197)
T 1pgv_A 36 LREDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELL 115 (197)
T ss_dssp HHTTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHH
T ss_pred HHhcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHH
Confidence 3455677888888875 66542 455677778899999999988876655555667778889999999998887666
Q ss_pred hHHHhcC---CCCCEEEccCC
Q 037325 437 DWFWQLS---LTLDELDVAYN 454 (598)
Q Consensus 437 ~~~~~~~---~~L~~L~ls~n 454 (598)
..+...+ +.|++|++++|
T Consensus 116 ~ala~aL~~N~tL~~L~L~n~ 136 (197)
T 1pgv_A 116 ARLLRSTLVTQSIVEFKADNQ 136 (197)
T ss_dssp HHHHHHTTTTCCCSEEECCCC
T ss_pred HHHHHHHhhCCceeEEECCCC
Confidence 5555432 45777777654
|
| >3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A* | Back alignment and structure |
|---|
Probab=97.05 E-value=0.001 Score=55.04 Aligned_cols=57 Identities=19% Similarity=0.255 Sum_probs=40.9
Q ss_pred cEEEccCCccc-ccCCchhhcccCCCCCccccCCCCeEeCcCCccccccchhccCCCCCCEEECCCCcCc
Q 037325 491 TKLYLRDNSFS-GLIPNDIGQNLPFLTDLGNLKQLITLVISNNNLSGEIPLLFSNISFLYILDMSNNSLS 559 (598)
Q Consensus 491 ~~L~ls~n~l~-~~~p~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ls~N~l~ 559 (598)
..++.+++.++ ..+|..+ -++|+.|+|++|+|+..-+..|..+++|+.|+|++|.+.
T Consensus 11 ~~v~Cs~~~L~~~~vP~~l------------p~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~ 68 (130)
T 3rfe_A 11 TLVDCGRRGLTWASLPTAF------------PVDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWR 68 (130)
T ss_dssp TEEECCSSCCCTTTSCSCC------------CTTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCB
T ss_pred CEEEeCCCCCccccCCCCC------------CcCCCEEECCCCcCCccChhhhhhccccCEEEecCCCee
Confidence 46777888775 4566554 246888888888888555556777888888888888664
|
| >3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A* | Back alignment and structure |
|---|
Probab=96.64 E-value=0.0032 Score=51.99 Aligned_cols=55 Identities=22% Similarity=0.246 Sum_probs=41.3
Q ss_pred CEEEcccCcCc-ccCCCCC-cCCcEEEccCCcccccCCch-hhcccCCCCCccccCCCCeEeCcCCccc
Q 037325 470 AKVDLSFNNFE-GRLLLWS-FNVTKLYLRDNSFSGLIPND-IGQNLPFLTDLGNLKQLITLVISNNNLS 535 (598)
Q Consensus 470 ~~l~ls~n~l~-~~~~~~~-~~L~~L~ls~n~l~~~~p~~-~~~~~~~~~~~~~l~~L~~L~Ls~N~l~ 535 (598)
..++-+++.++ ..+|..+ +++++|||++|+|+ .+|.. +.. +++|+.|+|++|.+.
T Consensus 11 ~~v~Cs~~~L~~~~vP~~lp~~l~~L~Ls~N~l~-~l~~~~f~~----------l~~L~~L~L~~NP~~ 68 (130)
T 3rfe_A 11 TLVDCGRRGLTWASLPTAFPVDTTELVLTGNNLT-ALPPGLLDA----------LPALRTAHLGANPWR 68 (130)
T ss_dssp TEEECCSSCCCTTTSCSCCCTTCSEEECTTSCCS-SCCTTTGGG----------CTTCCEEECCSSCCB
T ss_pred CEEEeCCCCCccccCCCCCCcCCCEEECCCCcCC-ccChhhhhh----------ccccCEEEecCCCee
Confidence 46788888886 4666554 47999999999998 45544 333 788999999999875
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 598 | ||||
| d1ogqa_ | 313 | c.10.2.8 (A:) Polygalacturonase inhibiting protein | 2e-17 | |
| d1ogqa_ | 313 | c.10.2.8 (A:) Polygalacturonase inhibiting protein | 2e-10 | |
| d2omza2 | 384 | c.10.2.1 (A:33-416) Internalin A {Listeria monocyt | 1e-15 | |
| d2omza2 | 384 | c.10.2.1 (A:33-416) Internalin A {Listeria monocyt | 8e-14 | |
| d2omza2 | 384 | c.10.2.1 (A:33-416) Internalin A {Listeria monocyt | 1e-12 | |
| d2omza2 | 384 | c.10.2.1 (A:33-416) Internalin A {Listeria monocyt | 4e-06 | |
| d1xkua_ | 305 | c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99 | 1e-14 | |
| d1xkua_ | 305 | c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99 | 2e-12 | |
| d1xkua_ | 305 | c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99 | 2e-09 | |
| d1xkua_ | 305 | c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99 | 1e-04 | |
| d1ozna_ | 284 | c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept | 1e-12 | |
| d1ozna_ | 284 | c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept | 2e-11 | |
| d1ozna_ | 284 | c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept | 4e-07 | |
| d2astb2 | 284 | c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p1 | 7e-11 | |
| d2astb2 | 284 | c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p1 | 7e-06 | |
| d1p9ag_ | 266 | c.10.2.7 (G:) von Willebrand factor binding domain | 2e-09 | |
| d1p9ag_ | 266 | c.10.2.7 (G:) von Willebrand factor binding domain | 5e-06 | |
| d1z7xw1 | 460 | c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human ( | 2e-07 | |
| d1z7xw1 | 460 | c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human ( | 4e-06 | |
| d1z7xw1 | 460 | c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human ( | 1e-05 | |
| d1z7xw1 | 460 | c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human ( | 2e-05 | |
| d1z7xw1 | 460 | c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human ( | 4e-05 | |
| d1z7xw1 | 460 | c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human ( | 5e-05 | |
| d1z7xw1 | 460 | c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human ( | 6e-04 | |
| d1z7xw1 | 460 | c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human ( | 0.002 | |
| d1z7xw1 | 460 | c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human ( | 0.002 | |
| d1z7xw1 | 460 | c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human ( | 0.002 | |
| d1z7xw1 | 460 | c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human ( | 0.004 | |
| d2ca6a1 | 344 | c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal dom | 4e-06 | |
| d2ca6a1 | 344 | c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal dom | 2e-05 | |
| d1xwdc1 | 242 | c.10.2.7 (C:18-259) Follicle-stimulating hormone r | 4e-06 | |
| d1xwdc1 | 242 | c.10.2.7 (C:18-259) Follicle-stimulating hormone r | 7e-04 | |
| d1h6ua2 | 227 | c.10.2.1 (A:36-262) Internalin H {Listeria monocyt | 7e-06 | |
| d1h6ua2 | 227 | c.10.2.1 (A:36-262) Internalin H {Listeria monocyt | 0.002 | |
| d1h6ua2 | 227 | c.10.2.1 (A:36-262) Internalin H {Listeria monocyt | 0.003 | |
| d1jl5a_ | 353 | c.10.2.6 (A:) Leucine rich effector protein YopM { | 3e-05 | |
| d1jl5a_ | 353 | c.10.2.6 (A:) Leucine rich effector protein YopM { | 8e-05 | |
| d1jl5a_ | 353 | c.10.2.6 (A:) Leucine rich effector protein YopM { | 1e-04 | |
| d1jl5a_ | 353 | c.10.2.6 (A:) Leucine rich effector protein YopM { | 2e-04 | |
| d1jl5a_ | 353 | c.10.2.6 (A:) Leucine rich effector protein YopM { | 0.002 | |
| d1jl5a_ | 353 | c.10.2.6 (A:) Leucine rich effector protein YopM { | 0.004 | |
| d1dcea3 | 124 | c.10.2.2 (A:444-567) Rab geranylgeranyltransferase | 6e-04 | |
| d1dcea3 | 124 | c.10.2.2 (A:444-567) Rab geranylgeranyltransferase | 8e-04 | |
| d1dcea3 | 124 | c.10.2.2 (A:444-567) Rab geranylgeranyltransferase | 0.001 | |
| d1h6ta2 | 210 | c.10.2.1 (A:31-240) Internalin B {Listeria monocyt | 0.003 | |
| d1h6ta2 | 210 | c.10.2.1 (A:31-240) Internalin B {Listeria monocyt | 0.004 |
| >d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Polygalacturonase inhibiting protein PGIP domain: Polygalacturonase inhibiting protein PGIP species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]
Score = 81.3 bits (199), Expect = 2e-17
Identities = 73/315 (23%), Positives = 110/315 (34%), Gaps = 37/315 (11%)
Query: 32 CQEAERKALLQFKQSLRDPSGQLSSWV-GEDCC--SWSGVSCNNRTAS--VIKLNLNNPF 86
C +++ALLQ K+ L +P+ LSSW+ DCC +W GV C+ T + V L+L+
Sbjct: 3 CNPQDKQALLQIKKDLGNPT-TLSSWLPTTDCCNRTWLGVLCDTDTQTYRVNNLDLSG-- 59
Query: 87 RDSFGSFEDDAGHELGGEISPSLLQLKDLEYLDLSMNNFTGFQVPEFIGSLKELRYLNLS 146
I SL L L +L + N +P I L +L YL ++
Sbjct: 60 ----------LNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYIT 109
Query: 147 GSFFSGTIPQ---------TLGNLSNLLYLDLNNFLDQSNQIDLEWLSGLSSLVYFNLGG 197
+ SG IP TL N L L + + G
Sbjct: 110 HTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSY 169
Query: 198 ADLSKAGAYWLEVFNKLHSFVELHLPNCNLPSLPLSFPSLNFASLQV--------LDLSN 249
SK N+L + N NL + LS L + +
Sbjct: 170 GSFSKLFTSMTISRNRLTGKIPPTFANLNLAFVDLSRNMLEGDASVLFGSDKNTQKIHLA 229
Query: 250 NDFNSTTPHWLFNITSLLCLDLGSNDLQGDIPDGFASLNSLQELDLSGNSFLGGQLSRNL 309
+ + + +L LDL +N + G +P G L L L++S N+ G
Sbjct: 230 KNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCG--EIPQG 287
Query: 310 GKLCNLRTMILSRNN 324
G L + N
Sbjct: 288 GNLQRFDVSAYANNK 302
|
| >d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Polygalacturonase inhibiting protein PGIP domain: Polygalacturonase inhibiting protein PGIP species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]
Score = 59.8 bits (143), Expect = 2e-10
Identities = 64/278 (23%), Positives = 104/278 (37%), Gaps = 34/278 (12%)
Query: 340 TNSILLEKLELRFNQFTGILPI--SLGSLKNLRHLVLWQN-SFLGSIPPSIGNLTLLKEL 396
T + + L+L PI SL +L L L + + +G IPP+I LT L L
Sbjct: 47 TQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYL 106
Query: 397 YLASNQMNGQKISDSYQH--------------------LKNQTELRTLVLNKARISDTIS 436
Y+ ++G Q + + L + + RIS I
Sbjct: 107 YITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIP 166
Query: 437 DWFWQLSLTLDELDVAYNELRGRVPNSLGFNFPAKVDLSFNNFEGRLLLWSFNVTKLYLR 496
D + S + ++ N L G++P + A VDLS N EG + +
Sbjct: 167 DSYGSFSKLFTSMTISRNRLTGKIPPTFANLNLAFVDLSRNMLEGDASVLFGSDKNTQKI 226
Query: 497 DNSFSGLIPNDIGQNLPFLTDLGNLKQLITLVISNNNLSGEIPLLFSNISFLYILDMSNN 556
+ + L + L + +L NN + G +P + + FL+ L++S N
Sbjct: 227 HLAKNSLAFDLGKVGLSKNLNGLDL--------RNNRIYGTLPQGLTQLKFLHSLNVSFN 278
Query: 557 SLSGSTPESIGSLRTVKFLVLRNNYLSGKLPLSLKNCT 594
+L G P+ G+L+ NN PL CT
Sbjct: 279 NLCGEIPQ-GGNLQRFDVSAYANNKCLCGSPLP--ACT 313
|
| >d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin A species: Listeria monocytogenes [TaxId: 1639]
Score = 76.6 bits (187), Expect = 1e-15
Identities = 77/368 (20%), Positives = 129/368 (35%), Gaps = 25/368 (6%)
Query: 234 FPSLNFASLQVLDLSNNDFNSTTPHW-LFNITSLLCLDLGSNDLQGDIPDGFASLNSLQE 292
F A L + T L +T+L LG + DG LN+L +
Sbjct: 16 FTDTALAEKMKTVLGKTNVTDTVSQTDLDQVTTLQADRLGIKSI-----DGVEYLNNLTQ 70
Query: 293 LDLSGNSFLGGQLSRNLGKLCNLRTMILSRNNISSEVSDFLDGLSECTNSILLEKLELRF 352
++ S N +NL KL ++ +I+ + N+ + + L+
Sbjct: 71 INFSNNQLTDITPLKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITDIDPLKN 130
Query: 353 NQFTGILPISLGSLKNLRHLVLWQNSFLGSIPPSIGNLTLLKELYLASNQMNGQKISDSY 412
L +S ++ ++ L + S + +L L L
Sbjct: 131 LTNLNRLELSSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVSDI 190
Query: 413 QHLKNQTELRTLVLNKARISDTISDWFWQLSLTLDELDVAYNELRGRVPNSLGFNFPAKV 472
L T L +L+ +ISD LDEL + N+L+ + +
Sbjct: 191 SVLAKLTNLESLIATNNQISDITPLGILT---NLDELSLNGNQLKD-IGTLASLTNLTDL 246
Query: 473 DLSFNNFEGRLLLWSF-NVTKLYLRDNSFSGLIPNDIGQNLPFLTDLGN----------L 521
DL+ N L +T+L L N S + P L L N L
Sbjct: 247 DLANNQISNLAPLSGLTKLTELKLGANQISNISPLAGLTALTNLELNENQLEDISPISNL 306
Query: 522 KQLITLVISNNNLSGEIPLLFSNISFLYILDMSNNSLSGSTPESIGSLRTVKFLVLRNNY 581
K L L + NN+S P S+++ L L +NN +S S+ +L + +L +N
Sbjct: 307 KNLTYLTLYFNNISDISP--VSSLTKLQRLFFANNKVSD--VSSLANLTNINWLSAGHNQ 362
Query: 582 LSGKLPLS 589
+S PL+
Sbjct: 363 ISDLTPLA 370
|
| >d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin A species: Listeria monocytogenes [TaxId: 1639]
Score = 71.2 bits (173), Expect = 8e-14
Identities = 71/363 (19%), Positives = 116/363 (31%), Gaps = 61/363 (16%)
Query: 107 PSLLQLKDLEYLDLSMNNFTGFQVPEFIGSLKELRYLNLSGSFFSGTIPQTLGNLSNLLY 166
S L + L + + L L +N S + + P L NL+ L+
Sbjct: 38 VSQTDLDQVTTLQADRLGIKSI---DGVEYLNNLTQINFSNNQLTDITP--LKNLTKLVD 92
Query: 167 LDLNNFLDQSNQIDLEWLSG-------------------------------LSSLVYFNL 195
+ +NN + +S + +
Sbjct: 93 ILMNNNQIADITPLANLTNLTGLTLFNNQITDIDPLKNLTNLNRLELSSNTISDISALSG 152
Query: 196 GGADLSKAGAYWLEVFNKLHSFVELHLPNCNLPSLPLSFPSLNFASLQVLDLSNNDFNST 255
+ + + L + L + + + +L+ L +NN +
Sbjct: 153 LTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQISDI 212
Query: 256 TPHWLFNITSLLCLDLGSNDLQGDIPDGFASLNSLQELDLSGNSFLGGQLSRNLGKLCNL 315
TP +T+L L L N L+ ASL +L +LDL+ N L KL L
Sbjct: 213 TPLG--ILTNLDELSLNGNQLKD--IGTLASLTNLTDLDLANNQISNLAPLSGLTKLTEL 268
Query: 316 R-----------TMILSRNNISSEVSDFLDGLSECTNSILLEKLELRFNQFTGILPISLG 364
+ L+ + L+ +S +N L L L FN + I P+
Sbjct: 269 KLGANQISNISPLAGLTALTNLELNENQLEDISPISNLKNLTYLTLYFNNISDISPV--S 326
Query: 365 SLKNLRHLVLWQNSFLGSIPPSIGNLTLLKELYLASNQMNGQKISDSYQHLKNQTELRTL 424
SL L+ L N S S+ NLT + L NQ++ L N T + L
Sbjct: 327 SLTKLQRLFFANNKV--SDVSSLANLTNINWLSAGHNQISDL------TPLANLTRITQL 378
Query: 425 VLN 427
LN
Sbjct: 379 GLN 381
|
| >d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin A species: Listeria monocytogenes [TaxId: 1639]
Score = 67.7 bits (164), Expect = 1e-12
Identities = 70/395 (17%), Positives = 133/395 (33%), Gaps = 43/395 (10%)
Query: 169 LNNFLDQSNQIDLEWLSGLSSLVYFNLGGADLSKAGAYWLEVFNKLHSFVELHLPNCNLP 228
+ L ++N D + L + + ++ L++ +++ N L
Sbjct: 25 MKTVLGKTNVTDTVSQTDLDQVTTLQADRLGIKS-----IDGVEYLNNLTQINFSNNQLT 79
Query: 229 SLPLSFPSLNFASLQVLDLSNNDFNSTTPHW------LFNITSLLCLDLGSNDLQGDIPD 282
+ P N L + ++NN TP + + D+ ++
Sbjct: 80 DIT---PLKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITDIDPLKNLTNLNR 136
Query: 283 GFASLNSLQELDLSGNSFLGGQLSRNLGKLCNLRTMILSRNNISSEVSDFLDGLSECTNS 342
S N++ ++ QLS L+ S+ + +S
Sbjct: 137 LELSSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVSDISVLAKL 196
Query: 343 ILLEKLELRFNQFTGILPISLGSLKNLRHLVLWQNSFLGSIPPSIGNLTLLKELYLASNQ 402
LE L NQ + I P+ + + NL L L N ++ +LT L +L LA+NQ
Sbjct: 197 TNLESLIATNNQISDITPLGILT--NLDELSLNGNQLKD--IGTLASLTNLTDLDLANNQ 252
Query: 403 MNGQKISDSYQHLKNQTELRTLVLNKARISDTISDWFWQLSLTLDELDVAYNELRGRVPN 462
++ L T+L L L +IS+ LT +
Sbjct: 253 ISN------LAPLSGLTKLTELKLGANQISNISPLA----GLTALTNLELNENQLEDISP 302
Query: 463 SLGFNFPAKVDLSFNNFEGRLLLWSF-NVTKLYLRDNSFSGLIPNDIGQNLPFLTDLGNL 521
+ L FNN + S + +L+ +N S + + L NL
Sbjct: 303 ISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFFANNKVSDV------------SSLANL 350
Query: 522 KQLITLVISNNNLSGEIPLLFSNISFLYILDMSNN 556
+ L +N +S PL +N++ + L +++
Sbjct: 351 TNINWLSAGHNQISDLTPL--ANLTRITQLGLNDQ 383
|
| >d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin A species: Listeria monocytogenes [TaxId: 1639]
Score = 46.9 bits (110), Expect = 4e-06
Identities = 14/65 (21%), Positives = 27/65 (41%), Gaps = 5/65 (7%)
Query: 107 PSLLQLKDLEYLDLSMNNFTGFQVPEFIGSLKELRYLNLSGSFFSGTIPQTLGNLSNLLY 166
+ L L+ L + N + + +L + +L+ + S P L NL+ +
Sbjct: 323 SPVSSLTKLQRLFFANNKVSD---VSSLANLTNINWLSAGHNQISDLTP--LANLTRITQ 377
Query: 167 LDLNN 171
L LN+
Sbjct: 378 LGLND 382
|
| >d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Decorin species: Cow (Bos taurus) [TaxId: 9913]
Score = 72.8 bits (177), Expect = 1e-14
Identities = 61/333 (18%), Positives = 103/333 (30%), Gaps = 58/333 (17%)
Query: 63 CSWSGVSCNNRTASVIKLNLNNPFRDSFGSFEDDAGHELGGEISPSLLQLKDLEYLDLSM 122
C V C++ + +L D LDL
Sbjct: 10 CHLRVVQCSDLGLEKVPKDLP-----------------------------PDTALLDLQN 40
Query: 123 NNFTGFQVPEFIGSLKELRYLNLSGSFFSGTIPQTLGNLSNLLYLDLNN----------- 171
N T + +LK L L L + S P L L L L+
Sbjct: 41 NKITEIK-DGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLKELPEKMP 99
Query: 172 --------FLDQSNQIDLEWLSGLSSLVYFNLGGADLSKAGAYWLEVFNKLHSFVELHLP 223
++ ++ +GL+ ++ LG L +G F + + +
Sbjct: 100 KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSG-IENGAFQGMKKLSYIRIA 158
Query: 224 NCNLPSLPLSFPSLNFASLQVLDLSNNDFNSTTPHWLFNITSLLCLDLGSNDLQGDIPDG 283
+ N+ ++P P SL L L N L + +L L L N +
Sbjct: 159 DTNITTIPQGLPP----SLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGS 214
Query: 284 FASLNSLQELDLSGNSFLGGQLSRNLGKLCNLRTMILSRNNISSEVSDFLDGLSECTNSI 343
A+ L+EL L+ N ++ L ++ + L NNIS+ S+ T
Sbjct: 215 LANTPHLRELHLNNNKL--VKVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKA 272
Query: 344 LLEKLELRFN--QFTGILPISLGSLKNLRHLVL 374
+ L N Q+ I P + + + L
Sbjct: 273 SYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQL 305
|
| >d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Decorin species: Cow (Bos taurus) [TaxId: 9913]
Score = 65.8 bits (159), Expect = 2e-12
Identities = 55/293 (18%), Positives = 94/293 (32%), Gaps = 27/293 (9%)
Query: 224 NCNLPSLPLSFPSLNFASLQVLDLSNNDFNSTTPHWLFNITSLLCLDLGSNDLQGDIPDG 283
+ L +P P +LDL NN N+ +L L L +N + P
Sbjct: 19 DLGLEKVPKDLPP----DTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGA 74
Query: 284 FASLNSLQELDLSGNSFLG---------GQLSRNLGKLCNLRTMILSRNNISSEVSDFLD 334
FA L L+ L LS N +L + ++ +R + + N V +
Sbjct: 75 FAPLVKLERLYLSKNQLKELPEKMPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTN 134
Query: 335 GLSECTNSI----LLEKLELRFNQFTGILPISLGSLKNLRHLVLWQNSFLGSIPPSIGNL 390
L ++KL T I I G +L L L N S+ L
Sbjct: 135 PLKSSGIENGAFQGMKKLSYIRIADTNITTIPQGLPPSLTELHLDGNKITKVDAASLKGL 194
Query: 391 TLLKELYLASNQMNGQKISDSYQHLKNQTELRTLVLNKARISDTISDWFWQLSLTLDELD 450
L +L L+ N ++ LR L LN ++ + +
Sbjct: 195 NNLAKLGLSFNSISAVDNGSLANT----PHLRELHLNNNKLVKVPGGLADHKYIQ--VVY 248
Query: 451 VAYNELRGRVPNSLGFNFPAKVDLSFNNFEGRLLLWSFNVTKLYLRDNSFSGL 503
+ N + N S++ + L+S V ++ ++F +
Sbjct: 249 LHNNNISAIGSNDFCPPGYNTKKASYSG----VSLFSNPVQYWEIQPSTFRCV 297
|
| >d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Decorin species: Cow (Bos taurus) [TaxId: 9913]
Score = 57.0 bits (136), Expect = 2e-09
Identities = 43/260 (16%), Positives = 90/260 (34%), Gaps = 28/260 (10%)
Query: 345 LEKLELRFNQFTGILPISLGSLKNLRHLVLWQNSFLGSIPPSIGNLTLLKELYLASNQMN 404
L+L+ N+ T I +LKNL L+L N P + L L+ LYL+ NQ
Sbjct: 33 TALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQ-- 90
Query: 405 GQKISDSYQHLKNQTELRTLVLNKARISDTISDWFWQLSLTLDELDVAYNELRGRVPNSL 464
+ + + + + + N+ + ++
Sbjct: 91 ---LKELPEKMPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQ 147
Query: 465 GFNFPAKVDLSFNNFEGRLLLWSFNVTKLYLRDNSFSGLIPNDIGQNLPFLTDLGN---- 520
G + + ++ N ++T+L+L N + + + + L L LG
Sbjct: 148 GMKKLSYIRIADTNITTIPQGLPPSLTELHLDGNKITKVDAASL-KGLNNLAKLGLSFNS 206
Query: 521 -----------LKQLITLVISNNNLSGEIPLLFSNISFLYILDMSNNSLSG------STP 563
L L ++NN L ++P ++ ++ ++ + NN++S P
Sbjct: 207 ISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNISAIGSNDFCPP 265
Query: 564 ESIGSLRTVKFLVLRNNYLS 583
+ + L +N +
Sbjct: 266 GYNTKKASYSGVSLFSNPVQ 285
|
| >d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Decorin species: Cow (Bos taurus) [TaxId: 9913]
Score = 41.9 bits (97), Expect = 1e-04
Identities = 44/223 (19%), Positives = 77/223 (34%), Gaps = 17/223 (7%)
Query: 373 VLWQNSFLGSIPPSIGNLTLLKELYLASNQMNGQKISDSYQHLKNQTELRTLVLNKARIS 432
V + L +P + L L +N++ K D KN L TL+L +IS
Sbjct: 15 VQCSDLGLEKVPKDLP--PDTALLDLQNNKITEIKDGD----FKNLKNLHTLILINNKIS 68
Query: 433 DTISDWFWQLSLTLDELDVAYNELRGRVPNSLGFNFPAKVDLSFNNFEGRLLLWSFNVTK 492
F L L+ L ++ N+L+ + N ++ FN
Sbjct: 69 KISPGAFAPLV-KLERLYLSKNQLKELPE---KMPKTLQELRVHENEITKVRKSVFNGLN 124
Query: 493 LYLRDNSFSGLIPNDIGQNLPFLTDLGNLKQLITLVISNNNLSGEIPLLFSNISFLYILD 552
+ L N + + +K+L + I++ N++ L + L L
Sbjct: 125 QMIVVE----LGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQGLPPS---LTELH 177
Query: 553 MSNNSLSGSTPESIGSLRTVKFLVLRNNYLSGKLPLSLKNCTF 595
+ N ++ S+ L + L L N +S SL N
Sbjct: 178 LDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPH 220
|
| >d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr) species: Human (Homo sapiens) [TaxId: 9606]
Score = 66.8 bits (161), Expect = 1e-12
Identities = 55/285 (19%), Positives = 81/285 (28%), Gaps = 15/285 (5%)
Query: 218 VELHLPNCNLPSLPLSFPSLNFASLQVLDLSNNDFNSTTPHWLFNITSLLCLDLGSNDLQ 277
V P L ++P+ P+ + Q + L N + +L L L SN L
Sbjct: 14 VTTSCPQQGLQAVPVGIPA----ASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLA 69
Query: 278 GDIPDGFASLNSLQELDLSGNSFLGGQLSRNLGKLCNLRTMILSRNNISSEVSDFLDGLS 337
F L L++LDLS N+ L L L T+ L R +
Sbjct: 70 RIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGL----- 124
Query: 338 ECTNSILLEKLELRFNQFTGILPISLGSLKNLRHLVLWQNSFLGSIPPSIGNLTLLKELY 397
L+ L L+ N + + L NL HL L N + L L L
Sbjct: 125 -FRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLL 183
Query: 398 LASNQMNGQKISDSYQHLKNQTELRTLVLNKARISDTISDWFWQLSLTLDELDVAYNELR 457
L N++ + T A + L L + N
Sbjct: 184 LHQNRVAHVHPHAFRDLGRLMTLYLF-----ANNLSALPTEALAPLRALQYLRLNDNPWV 238
Query: 458 GRVPNSLGFNFPAKVDLSFNNFEGRLLLWSFNVTKLYLRDNSFSG 502
+ + K S + L L N G
Sbjct: 239 CDCRARPLWAWLQKFRGSSSEVPCSLPQRLAGRDLKRLAANDLQG 283
|
| >d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr) species: Human (Homo sapiens) [TaxId: 9606]
Score = 62.5 bits (150), Expect = 2e-11
Identities = 55/277 (19%), Positives = 92/277 (33%), Gaps = 18/277 (6%)
Query: 129 QVPEFIGSLKELRYLNLSGSFFSGTIPQTLGNLSNLLYLDLNNFLDQSNQIDLEWLSGLS 188
VP I + + + L G+ S + NL +L + ++ +
Sbjct: 25 AVPVGIPA--ASQRIFLHGNRISHVPAASFRACRNLTI----LWLHSNVLARIDAAAFTG 78
Query: 189 SLVYFNLGGADLSKAGAYWLEVFNKLHSFVELHLPNCNLPSLPLSFPSLNFASLQVLDLS 248
+ L +D ++ + F+ L LHL C L L A+LQ L L
Sbjct: 79 LALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFR-GLAALQYLYLQ 137
Query: 249 NNDFNSTTPHWLFNITSLLCLDLGSNDLQGDIPDGFASLNSLQELDLSGNSFLGGQLSRN 308
+N + ++ +L L L N + F L+SL L L N
Sbjct: 138 DNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVH-PHA 196
Query: 309 LGKLCNLRTMILSRNNISSEVSDFLDGLSECTNSILLEKLELRFNQFTGILPISLGSLKN 368
L L T+ L NN+S+ ++ L+ L L N +
Sbjct: 197 FRDLGRLMTLYLFANNLSALPTEA------LAPLRALQYLRLNDNPWVCDCRA-RPLWAW 249
Query: 369 LRHLVLWQNSFLGSIPPSIGNLTLLKELYLASNQMNG 405
L+ + S+P + L LA+N + G
Sbjct: 250 LQKFRGSSSEVPCSLPQRLAGRDL---KRLAANDLQG 283
|
| >d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr) species: Human (Homo sapiens) [TaxId: 9606]
Score = 49.8 bits (117), Expect = 4e-07
Identities = 45/258 (17%), Positives = 85/258 (32%), Gaps = 26/258 (10%)
Query: 345 LEKLELRFNQFTGILPISLGSLKNLRHLVLWQNSFLGSIPPSIGNLTLLKELYLASNQMN 404
+++ L N+ + + S + +NL L L N + L LL++L L+ N
Sbjct: 34 SQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQL 93
Query: 405 GQKISDSYQHLKNQTELRTLVLNKARISDTISDWFWQLSLTLDELDVAYNELRGRVPNSL 464
++ L L TL L++ + + F L+ L L + N L+ ++
Sbjct: 94 RSVDPATFHGLGR---LHTLHLDRCGLQELGPGLFRGLA-ALQYLYLQDNALQALPDDTF 149
Query: 465 GFNFP-AKVDLSFNNFEGRLLLWSFNVTKL---YLRDNSFSGLIPNDIGQNLPFLTDL-- 518
+ L N + L L N + + P+ +T
Sbjct: 150 RDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLF 209
Query: 519 ------------GNLKQLITLVISNNNLSGEIPLLFSNISFLYILDMSNNSLSGSTPESI 566
L+ L L +++N + ++L S++ + S P+
Sbjct: 210 ANNLSALPTEALAPLRALQYLRLNDNPWVCDCRAR-PLWAWLQKFRGSSSEVPCSLPQ-- 266
Query: 567 GSLRTVKFLVLRNNYLSG 584
L L N L G
Sbjct: 267 -RLAGRDLKRLAANDLQG 283
|
| >d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 284 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: Cyclin A/CDK2-associated p19, Skp2 domain: Cyclin A/CDK2-associated p19, Skp2 species: Human (Homo sapiens) [TaxId: 9606]
Score = 61.3 bits (147), Expect = 7e-11
Identities = 50/268 (18%), Positives = 88/268 (32%), Gaps = 30/268 (11%)
Query: 103 GEISPSLLQLKDLEYLDLSMNNFTGFQVPEFIGSLKELRYLNLSGSFFSGTIPQTLGNLS 162
+ ++++DLS + + + +L+ L+L G S I TL S
Sbjct: 36 DQPLAEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNS 95
Query: 163 NLLYLDLNNFLDQSNQIDLEWLSGLSSLVYFNLGGADLSKAGAYWLEVFNKLHSFVELHL 222
NL+ L+L+ S LS S L NL + V + + +L+L
Sbjct: 96 NLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNL 155
Query: 223 PNCNLPSLPLSFPSLNFASLQVLDLSNNDFNSTTPHWLFNITSLLCLDLGSNDLQGDIPD 282
N + + + S L+ D
Sbjct: 156 SGYR---------------------KNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQ 194
Query: 283 GFASLNSLQELDLSGNSFLGGQLSRNLGKLCNLRTMILSRNNISSEVSDFLDGLSECTNS 342
F LN LQ L LS + + LG++ L+T+ + + + L
Sbjct: 195 EFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGIVPDGTLQLLKEALP----- 249
Query: 343 ILLEKLELRFNQFTGILPISLGSLKNLR 370
L++ + FT I ++G+ KN
Sbjct: 250 ----HLQINCSHFTTIARPTIGNKKNQE 273
|
| >d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 284 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: Cyclin A/CDK2-associated p19, Skp2 domain: Cyclin A/CDK2-associated p19, Skp2 species: Human (Homo sapiens) [TaxId: 9606]
Score = 45.9 bits (107), Expect = 7e-06
Identities = 42/274 (15%), Positives = 94/274 (34%), Gaps = 12/274 (4%)
Query: 243 QVLDLSNNDFNSTTPHWLFNITSLLCLDLGSNDLQGDIPDGFASLNSLQELDLSGNSFLG 302
Q LDL+ + + L + ++ + + + + F+ +Q +DLS +
Sbjct: 3 QTLDLTGKNLHPDVTGRLLSQ-GVIAFRCPRSFMDQPLAEHFSPFR-VQHMDLSNSVIEV 60
Query: 303 GQLSRNLGKLCNLRTMILSRNNISSEVSDFLDGLSECTNSILLEKLELRFNQFTGILP-- 360
L L + L+ + L +S + ++ L++ +N + L +
Sbjct: 61 STLHGILSQCSKLQNLSLEGLRLSDPI---VNTLAKNSNLVRLNLSGCSGFSEFALQTLL 117
Query: 361 ISLGSLKNLRHLVLWQNSFLGSIPPSIGNLTLLKELYLASNQMNGQKISDSYQHLKNQTE 420
S L L + + + +L L+ + N QK S +
Sbjct: 118 SSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNL 177
Query: 421 LRTLVLNKARISDTISDWFWQLSLTLDELDVAY-NELRGRVPNSLGFNFPA--KVDLSFN 477
+ + + + + F+QL+ L L ++ ++ LG P + +
Sbjct: 178 VHLDLSDSVMLKNDCFQEFFQLN-YLQHLSLSRCYDIIPETLLELG-EIPTLKTLQVFGI 235
Query: 478 NFEGRLLLWSFNVTKLYLRDNSFSGLIPNDIGQN 511
+G L L + L + + F+ + IG
Sbjct: 236 VPDGTLQLLKEALPHLQINCSHFTTIARPTIGNK 269
|
| >d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: von Willebrand factor binding domain of glycoprotein Ib alpha species: Human (Homo sapiens) [TaxId: 9606]
Score = 56.6 bits (135), Expect = 2e-09
Identities = 43/207 (20%), Positives = 66/207 (31%), Gaps = 22/207 (10%)
Query: 111 QLKDLEYLDLSMNNFTGFQVPEFIGSLKELRYLNLSGSFFSGTIPQTLGNLSNLLYLDLN 170
++ ++ N T +P + K+ L+LS + TL + L L+L+
Sbjct: 8 KVASHLEVNCDKRNLT--ALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLD 63
Query: 171 NFLDQSNQIDLEWLSGLSSLVYFNLGGADLSKAGAYWLEVFNKLHSFVEL---------- 220
Q+D L L +L + L G + SF L
Sbjct: 64 RAELTKLQVD-GTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRG 122
Query: 221 ------HLPNCNLPSLPLSFPSLNFASLQVLDLSNNDFNSTTPHWLFNITSLLCLDLGSN 274
N L+ L L+NN+ L + +L L L N
Sbjct: 123 LGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQEN 182
Query: 275 DLQGDIPDGFASLNSLQELDLSGNSFL 301
L IP GF + L L GN +L
Sbjct: 183 SLY-TIPKGFFGSHLLPFAFLHGNPWL 208
|
| >d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: von Willebrand factor binding domain of glycoprotein Ib alpha species: Human (Homo sapiens) [TaxId: 9606]
Score = 46.2 bits (108), Expect = 5e-06
Identities = 32/221 (14%), Positives = 62/221 (28%), Gaps = 18/221 (8%)
Query: 338 ECTNSILLEKLELRFNQFTGILPISLGSLKNLRHLVLWQNSFLGSIPPSIGNLTLLKELY 397
E + ++ T + P L K+ L L +N ++ T L +L
Sbjct: 5 EVSKVASHLEVNCDKRNLTAL-PPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLN 61
Query: 398 LASNQMNGQKISDSYQHLKNQTELRTLVLNKARISDTISDWFWQLSLTLDELDVAYNELR 457
L ++ ++ + L + + + T+ + LR
Sbjct: 62 LDRAELTKLQVDGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALR 121
Query: 458 GRVPNSLGFNFPAKVDLSFNNFEGRLLLWSFNVTKLYLRDNSFSGLIPNDIGQNLPFLTD 517
G + ++ L +N+ + L
Sbjct: 122 GLGELQELYLKGNELKTLPPGLLTPTPKLEKL----SLANNNLTELPAG----------L 167
Query: 518 LGNLKQLITLVISNNNLSGEIPLLFSNISFLYILDMSNNSL 558
L L+ L TL++ N+L IP F L + N
Sbjct: 168 LNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGNPW 207
|
| >d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: 28-residue LRR domain: Ribonuclease inhibitor species: Human (Homo sapiens) [TaxId: 9606]
Score = 51.1 bits (120), Expect = 2e-07
Identities = 17/98 (17%), Positives = 32/98 (32%), Gaps = 10/98 (10%)
Query: 286 SLNSLQELDLSGNSFLGGQLSRNLGKLCNLRTMILSRNNISSE-VSDFLDGLSECTNSIL 344
SL+ +Q LD+ + + L L + + L ++ D L
Sbjct: 1 SLD-IQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPA--- 56
Query: 345 LEKLELRFNQFTGILPISLGSL-----KNLRHLVLWQN 377
L +L LR N+ + + ++ L L
Sbjct: 57 LAELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNC 94
|
| >d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: 28-residue LRR domain: Ribonuclease inhibitor species: Human (Homo sapiens) [TaxId: 9606]
Score = 46.9 bits (109), Expect = 4e-06
Identities = 23/99 (23%), Positives = 35/99 (35%), Gaps = 10/99 (10%)
Query: 249 NNDFNSTTPHWLFNITSLLCLDLGSNDLQGD----IPDGFASLNSLQELDLSGNSFLGGQ 304
+ + L L L D+ + + +SL+ELDLS N LG
Sbjct: 354 DAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNC-LGDA 412
Query: 305 LSRNLGK-----LCNLRTMILSRNNISSEVSDFLDGLSE 338
L + C L ++L S E+ D L L +
Sbjct: 413 GILQLVESVRQPGCLLEQLVLYDIYWSEEMEDRLQALEK 451
|
| >d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: 28-residue LRR domain: Ribonuclease inhibitor species: Human (Homo sapiens) [TaxId: 9606]
Score = 45.4 bits (105), Expect = 1e-05
Identities = 12/81 (14%), Positives = 29/81 (35%), Gaps = 9/81 (11%)
Query: 114 DLEYLDLSMNNFTGFQVPEFIGSLKELRYLNLSGSFFSG----TIPQTLGNLSNLLYLDL 169
D++ LD+ + + E + L++ + + L + I L L L+L
Sbjct: 3 DIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNL 62
Query: 170 NNFLDQSNQIDLEWLSGLSSL 190
+ N++ + +
Sbjct: 63 RS-----NELGDVGVHCVLQG 78
|
| >d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: 28-residue LRR domain: Ribonuclease inhibitor species: Human (Homo sapiens) [TaxId: 9606]
Score = 45.0 bits (104), Expect = 2e-05
Identities = 19/94 (20%), Positives = 37/94 (39%), Gaps = 7/94 (7%)
Query: 284 FASLNSLQELDLSGNSFLG---GQLSRNLGKLCNLRTMILSRNNISSE-VSDFLDGLSEC 339
+ L+ L L+ L+ L +LR + LS N + + ++ + +
Sbjct: 365 GQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQ- 423
Query: 340 TNSILLEKLELRFNQFTGILPISLGSL-KNLRHL 372
LLE+L L ++ + L +L K+ L
Sbjct: 424 -PGCLLEQLVLYDIYWSEEMEDRLQALEKDKPSL 456
|
| >d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: 28-residue LRR domain: Ribonuclease inhibitor species: Human (Homo sapiens) [TaxId: 9606]
Score = 44.2 bits (102), Expect = 4e-05
Identities = 13/102 (12%), Positives = 30/102 (29%), Gaps = 13/102 (12%)
Query: 487 SFNVTKLYLRDNSFSGLIPNDIGQNLPFLTDLGNLKQLITLVISNNNLSGE----IPLLF 542
S ++ L ++ S ++ L L+Q + + + L+ I
Sbjct: 1 SLDIQSLDIQCEELSDARWAEL---------LPLLQQCQVVRLDDCGLTEARCKDISSAL 51
Query: 543 SNISFLYILDMSNNSLSGSTPESIGSLRTVKFLVLRNNYLSG 584
L L++ +N L + ++ L
Sbjct: 52 RVNPALAELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQN 93
|
| >d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: 28-residue LRR domain: Ribonuclease inhibitor species: Human (Homo sapiens) [TaxId: 9606]
Score = 43.4 bits (100), Expect = 5e-05
Identities = 18/99 (18%), Positives = 32/99 (32%), Gaps = 14/99 (14%)
Query: 236 SLNFASLQVLDLSNNDFNSTTPHWLF-NITSLLCLDLGSNDLQGD----IPDGFASLNSL 290
SL+ +Q LD+ + + L + + L L I +L
Sbjct: 1 SLD---IQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPAL 57
Query: 291 QELDLSGNSFLGGQLSRNLGKL-----CNLRTMILSRNN 324
EL+L N LG + + C ++ + L
Sbjct: 58 AELNLRSNE-LGDVGVHCVLQGLQTPSCKIQKLSLQNCC 95
|
| >d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: 28-residue LRR domain: Ribonuclease inhibitor species: Human (Homo sapiens) [TaxId: 9606]
Score = 40.3 bits (92), Expect = 6e-04
Identities = 17/93 (18%), Positives = 28/93 (30%), Gaps = 11/93 (11%)
Query: 486 WSFNVTKLYLRDNSFSGLIPNDIGQNLPFLTDLGNLKQLITLVISNNNLSGEIPL----- 540
+ L+L D S + + L L L +SNN L L
Sbjct: 367 PGSVLRVLWLADCDVSDSSCSSLAATLL------ANHSLRELDLSNNCLGDAGILQLVES 420
Query: 541 LFSNISFLYILDMSNNSLSGSTPESIGSLRTVK 573
+ L L + + S + + +L K
Sbjct: 421 VRQPGCLLEQLVLYDIYWSEEMEDRLQALEKDK 453
|
| >d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: 28-residue LRR domain: Ribonuclease inhibitor species: Human (Homo sapiens) [TaxId: 9606]
Score = 38.4 bits (87), Expect = 0.002
Identities = 17/93 (18%), Positives = 31/93 (33%), Gaps = 9/93 (9%)
Query: 341 NSILLEKLELRFNQFTGI----LPISLGSLKNLRHLVLWQNSFLGSIPPSIG-----NLT 391
+L L L + L +L + +LR L L N + +
Sbjct: 367 PGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGC 426
Query: 392 LLKELYLASNQMNGQKISDSYQHLKNQTELRTL 424
LL++L L + + K++ LR +
Sbjct: 427 LLEQLVLYDIYWSEEMEDRLQALEKDKPSLRVI 459
|
| >d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: 28-residue LRR domain: Ribonuclease inhibitor species: Human (Homo sapiens) [TaxId: 9606]
Score = 38.4 bits (87), Expect = 0.002
Identities = 18/96 (18%), Positives = 33/96 (34%), Gaps = 9/96 (9%)
Query: 505 PNDIGQNLPFLTDLGNLKQLITLVISNNNLSGE----IPLLFSNISFLYILDMSNNSLSG 560
D G L L +++ ++S + L LD+SNN L
Sbjct: 352 LEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGD 411
Query: 561 STPESIGS-----LRTVKFLVLRNNYLSGKLPLSLK 591
+ + ++ LVL + Y S ++ L+
Sbjct: 412 AGILQLVESVRQPGCLLEQLVLYDIYWSEEMEDRLQ 447
|
| >d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: 28-residue LRR domain: Ribonuclease inhibitor species: Human (Homo sapiens) [TaxId: 9606]
Score = 38.4 bits (87), Expect = 0.002
Identities = 20/90 (22%), Positives = 32/90 (35%), Gaps = 5/90 (5%)
Query: 367 KNLRHLVLWQNSF----LGSIPPSIGNLTLLKELYLASNQMNGQKISDSYQHLK-NQTEL 421
LR L L S+ ++ L+EL L++N + I + ++ L
Sbjct: 369 SVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGCLL 428
Query: 422 RTLVLNKARISDTISDWFWQLSLTLDELDV 451
LVL S+ + D L L V
Sbjct: 429 EQLVLYDIYWSEEMEDRLQALEKDKPSLRV 458
|
| >d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: 28-residue LRR domain: Ribonuclease inhibitor species: Human (Homo sapiens) [TaxId: 9606]
Score = 37.3 bits (84), Expect = 0.004
Identities = 15/87 (17%), Positives = 23/87 (26%), Gaps = 9/87 (10%)
Query: 95 DDAGHELGGEISPSLL-QLKDLEYLDLSMNNFTGFQV---PEFIGSLKELRYLNLSGSFF 150
D EL LL L+ + + L T + + L LNL +
Sbjct: 8 DIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNEL 67
Query: 151 SGTIPQTLG-----NLSNLLYLDLNNF 172
+ + L L N
Sbjct: 68 GDVGVHCVLQGLQTPSCKIQKLSLQNC 94
|
| >d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Length = 344 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: Rna1p (RanGAP1), N-terminal domain domain: Rna1p (RanGAP1), N-terminal domain species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]
Score = 46.8 bits (109), Expect = 4e-06
Identities = 48/320 (15%), Positives = 88/320 (27%), Gaps = 18/320 (5%)
Query: 95 DDAGHELGGEISPSLLQLKDLEYLDLSMNNFTG---FQVPEFIGSLKELRYLNLSGSFFS 151
D E + LL+ ++ + LS N + E I S K+L S F
Sbjct: 13 DAITTEDEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTG 72
Query: 152 GTIPQTLGNLSNLLYLDLNNFLDQSNQIDLEWLSGLSSLVYFNLGGADLS---------K 202
+ L LL L + ++ + +
Sbjct: 73 RVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNG 132
Query: 203 AGAYWLEVFNKLHSFVELHLPNCNLPSLPLSFPSLNFASLQVLDLSNNDFNSTTPHWLFN 262
G + + ++ N P L N + F S
Sbjct: 133 LGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVK 192
Query: 263 ITSLLCLDLGSNDLQGDIPDGFASLNSLQELDLSGNSFLGGQLSRNLGKLCNLRTMILSR 322
+ G L + L L D + L+ L NLR + L+
Sbjct: 193 MVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLND 252
Query: 323 NNISSEVSDFLDGLSECTNSILLEKLELRFNQFTGILPISLGS-----LKNLRHLVLWQN 377
+S+ + + +I L+ L L++N+ +L + + +L L L N
Sbjct: 253 CLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGN 312
Query: 378 SFLGSIPPSIGNLTLLKELY 397
F + + +
Sbjct: 313 RF-SEEDDVVDEIREVFSTR 331
|
| >d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Length = 344 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: Rna1p (RanGAP1), N-terminal domain domain: Rna1p (RanGAP1), N-terminal domain species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]
Score = 44.5 bits (103), Expect = 2e-05
Identities = 42/329 (12%), Positives = 87/329 (26%), Gaps = 23/329 (6%)
Query: 269 LDLGSNDLQGDIPDGFASLNSLQELDLSGNSF---LGGQLSRNLGKLCNLRTMILSRN-- 323
+ + D + + +S++E+ LSGN+ LS N+ +L S
Sbjct: 13 DAITTEDEK-SVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFT 71
Query: 324 -NISSEVSDFLDGLSE--CTNSILLEKLELRFNQFTGILPISLGSLKNLRHLVLWQNSFL 380
+ E+ + L L + L + L L
Sbjct: 72 GRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNN 131
Query: 381 GSIPPSIGNLTLLKELYLASNQMNGQKISDSYQHLKNQTELRTLVLNKARISDTISDWFW 440
G P + + + + + S +N+ E ++
Sbjct: 132 GLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTV 191
Query: 441 QLSLTLDELDVA----YNELRGRVPNSLGFNFPAKVDLSFNNFEGRLLLWSFNVTKLYLR 496
++ + L + ++ L N+ +L L
Sbjct: 192 KMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLN 251
Query: 497 DNSFSGLIPNDIGQNLPFLTDLGNLKQLITLVISNNNLSGEIPL-----LFSNISFLYIL 551
D S + L L TL + N + + + + L L
Sbjct: 252 DCLLSARGAAAVVDAFSKL----ENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFL 307
Query: 552 DMSNNSLSGSTPESIGSLRTVKFLVLRNN 580
+++ N S + + +R V R
Sbjct: 308 ELNGNRFSEE-DDVVDEIREVFSTRGRGE 335
|
| >d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 242 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Follicle-stimulating hormone receptor species: Human (Homo sapiens) [TaxId: 9606]
Score = 46.1 bits (107), Expect = 4e-06
Identities = 29/247 (11%), Positives = 57/247 (23%), Gaps = 20/247 (8%)
Query: 313 CNLRTMILSRNNISSEVSDFLDGLSECTNSILLEKLELRFNQFTGILPISLGSLKNLRHL 372
C+ R + + ++ SD +L + I + +L +
Sbjct: 8 CSNRVFLCQESKVTEIPSDLPRNA---------IELRFVLTKLRVIQKGAFSGFGDLEKI 58
Query: 373 VLWQNSFLGSIPPSIGNLTLLKELYLASNQMNGQKISDSYQHLKNQTELRTLVLNKARIS 432
+ QN L I + + N I+ + + +
Sbjct: 59 EISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHL 118
Query: 433 DTISDWFWQLSLTLDELDVAYNELRGRVPNSLGFNFPAKVDLSFNNFEGRLLLWSFNVTK 492
+ + LD D R + L+ N +
Sbjct: 119 PDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIHNCAFNGTQL 178
Query: 493 LYLRDNS--FSGLIPNDIGQNLPFLTDLGNLKQLITLVISNNNLSGEIPLLFSNISFLYI 550
L + +PND+ + L IS + N+ L
Sbjct: 179 DELNLSDNNNLEELPNDV---------FHGASGPVILDISRTRIHSLPSYGLENLKKLRA 229
Query: 551 LDMSNNS 557
N
Sbjct: 230 RSTYNLK 236
|
| >d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 242 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Follicle-stimulating hormone receptor species: Human (Homo sapiens) [TaxId: 9606]
Score = 39.1 bits (89), Expect = 7e-04
Identities = 33/265 (12%), Positives = 67/265 (25%), Gaps = 35/265 (13%)
Query: 63 CSWSGVSCNNRTASVIKLNLNNPFRDSFGSFEDDAGHELGGEISPSLLQLKDLEYLDLSM 122
CS C + I +L ++ L +
Sbjct: 8 CSNRVFLCQESKVTEIPSDL-----------------------------PRNAIELRFVL 38
Query: 123 NNFTGFQVPEFIGSLKELRYLNLSGSFFSGTIPQTLGNLSNLLYLDLNNFLDQSNQIDLE 182
Q +L + +S + I + + L +N + +
Sbjct: 39 TKLRVIQ-KGAFSGFGDLEKIEISQNDVLEVIEADVFSNLP--KLHEIRIEKANNLLYIN 95
Query: 183 WLSGLSSLVYFNLGGADLSKAGAYWLEVFNKLHSFVELHLPNCNLPSLPLSFPSLNFASL 242
+ + L ++ + + L + N N+ ++ +
Sbjct: 96 PEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFES 155
Query: 243 QVLDLSNNDFNSTTPHWLFNITSLLCLDLGSNDLQGDIPDGFASLNSLQELDLSGNSFLG 302
+L L+ N +N+L+ D F + LD+S +
Sbjct: 156 VILWLNKNGIQEIHNCAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTR-IH 214
Query: 303 GQLSRNLGKLCNLRTMILSRNNISS 327
S L L LR S N+
Sbjct: 215 SLPSYGLENLKKLRA--RSTYNLKK 237
|
| >d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Length = 227 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin H species: Listeria monocytogenes [TaxId: 1639]
Score = 45.4 bits (106), Expect = 7e-06
Identities = 37/212 (17%), Positives = 68/212 (32%), Gaps = 7/212 (3%)
Query: 345 LEKLELRFNQFTGILPISLGSLKNLRHLVLWQNSFLGSIPPSIGNLTLLKELYLASNQMN 404
K+ + T ++ L + L + + +I + L L L L NQ+
Sbjct: 21 AIKIAAGKSNVTDT--VTQADLDGITTLSAFGTG-VTTIEG-VQYLNNLIGLELKDNQIT 76
Query: 405 GQKISDSYQHLKNQTELRTLVLNKARISDTISDWFWQLSLTLDELDVAYNELRGRVPNSL 464
+ + + N + I+ S L+ T L L
Sbjct: 77 DLAPLKNLTKITELELSGNPLKNVSAIAGLQSIKTLDLTSTQITDVTPLAGLSNLQVLYL 136
Query: 465 GFNFPAKVDLSFNNFEGRLLLWSFNVTKLYLRDNSFSGLIPNDIGQN-LPFLTDLGNLKQ 523
N + + L + S L N + ++ L +L
Sbjct: 137 DLNQITNISPLAGLTNLQYLSIGNAQVSDLTPLANLSKLTTLKADDNKISDISPLASLPN 196
Query: 524 LITLVISNNNLSGEIPLLFSNISFLYILDMSN 555
LI + + NN +S PL +N S L+I+ ++N
Sbjct: 197 LIEVHLKNNQISDVSPL--ANTSNLFIVTLTN 226
|
| >d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Length = 227 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin H species: Listeria monocytogenes [TaxId: 1639]
Score = 37.7 bits (86), Expect = 0.002
Identities = 16/57 (28%), Positives = 22/57 (38%), Gaps = 5/57 (8%)
Query: 115 LEYLDLSMNNFTGFQVPEFIGSLKELRYLNLSGSFFSGTIPQTLGNLSNLLYLDLNN 171
L L N + + SL L ++L + S P L N SNL + L N
Sbjct: 175 LTTLKADDNKISDI---SPLASLPNLIEVHLKNNQISDVSP--LANTSNLFIVTLTN 226
|
| >d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Length = 227 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin H species: Listeria monocytogenes [TaxId: 1639]
Score = 37.3 bits (85), Expect = 0.003
Identities = 34/219 (15%), Positives = 63/219 (28%), Gaps = 18/219 (8%)
Query: 111 QLKDLEYLDLSMNNFTGFQVPEFIGSLKELRYLNLSGSFFSGTIPQTLGNLSNLLYLDL- 169
L + + +N T L + L+ G+ + + + L+NL+ L+L
Sbjct: 17 ALANAIKIAAGKSNVTD---TVTQADLDGITTLSAFGTGVTTI--EGVQYLNNLIGLELK 71
Query: 170 NNFLDQSNQIDLEWLSGLSSLVYFNLGGADLSKAGAYWLEVFNKLHSFVELHLPNCNLPS 229
+N + + L L + ++
Sbjct: 72 DNQITDLAPLKNLTKITELELSGNPLKNVSAIAGLQSIKTLDLTSTQITDVTPLAGLSNL 131
Query: 230 LPLSFPSLNFASLQVLDL-------SNNDFNSTTPHWLFNITSLLCLDLGSNDLQGDIPD 282
L ++ L S + + L N++ L L N + P
Sbjct: 132 QVLYLDLNQITNISPLAGLTNLQYLSIGNAQVSDLTPLANLSKLTTLKADDNKISDISP- 190
Query: 283 GFASLNSLQELDLSGNSFLGGQLSRNLGKLCNLRTMILS 321
ASL +L E+ L N L NL + L+
Sbjct: 191 -LASLPNLIEVHLKNNQISD---VSPLANTSNLFIVTLT 225
|
| >d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Leucine rich effector protein YopM domain: Leucine rich effector protein YopM species: Yersinia pestis [TaxId: 632]
Score = 44.4 bits (103), Expect = 3e-05
Identities = 20/85 (23%), Positives = 30/85 (35%), Gaps = 10/85 (11%)
Query: 207 WLEVFNKLHSFVELHLPNCNLPSLPLSFPSLNFASLQVLDLSNNDFNSTTPHWLFNITSL 266
+ + S EL++ N L LP P L+ L S N +L
Sbjct: 276 IRSLCDLPPSLEELNVSNNKLIELPALPP-----RLERLIASFNHLAEVPEL----PQNL 326
Query: 267 LCLDLGSNDLQGDIPDGFASLNSLQ 291
L + N L+ PD S+ L+
Sbjct: 327 KQLHVEYNPLRE-FPDIPESVEDLR 350
|
| >d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Leucine rich effector protein YopM domain: Leucine rich effector protein YopM species: Yersinia pestis [TaxId: 632]
Score = 42.9 bits (99), Expect = 8e-05
Identities = 22/113 (19%), Positives = 43/113 (38%), Gaps = 16/113 (14%)
Query: 258 HWLFNITSLLCLDLGSNDLQGDIPDGFASLNSLQELDLSGNSFLGGQLSRNLGKLCNLRT 317
+ ++ L N +I SL+EL++S N +L L
Sbjct: 254 NIFSGLSELPPNLYYLNASSNEIRSLCDLPPSLEELNVSNN-----KLIELPALPPRLER 308
Query: 318 MILSRNNISSEVSDFLDGLSECTNSILLEKLELRFNQFTGILPISLGSLKNLR 370
+I S N+++ + E + L++L + +N P S+++LR
Sbjct: 309 LIASFNHLAE--------VPELPQN--LKQLHVEYNPLRE-FPDIPESVEDLR 350
|
| >d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Leucine rich effector protein YopM domain: Leucine rich effector protein YopM species: Yersinia pestis [TaxId: 632]
Score = 42.1 bits (97), Expect = 1e-04
Identities = 55/330 (16%), Positives = 107/330 (32%), Gaps = 30/330 (9%)
Query: 269 LDLGSNDLQGDIPDGFASLNSLQELDLSGNSFLGGQLSRNLGKLCNLRTMILSRNNISSE 328
L+L + L +P+ L+ L S N L+ +L+++++ NN+ +
Sbjct: 43 LELNNLGLS-SLPE---LPPHLESLVASCN-----SLTELPELPQSLKSLLVDNNNLKAL 93
Query: 329 V----SDFLDGLSECTNSILLEKLELRFNQFTGILPISLGSLKNLRHLVLWQNSFLGSIP 384
G+S L E F + + SL L +L + + + +
Sbjct: 94 SDLPPLLEYLGVSNNQLEKLPELQNSSFLKIIDVDNNSLKKLPDLPPSLEFIAAGNNQLE 153
Query: 385 PSIGNLTLLKELYLASNQMNGQKISDSYQHLKNQTELRTLVLNKARISDTISDWFWQLSL 444
L ++S + L + ++ I + + + L
Sbjct: 154 ELPELQNL-------PFLTAIYADNNSLKKLPDLPLSLESIVAGNNILEELPELQNLPFL 206
Query: 445 TLDELDVAYNELRGRVPNSLGFNFPAKVDLSFNNFEGRLLLWSFNVTKLYLRDNSFSGLI 504
T D + +P SL L+ + L + ++ + +
Sbjct: 207 TTIYADNNLLKTLPDLPPSLEALNVRDNYLTDLPELPQSLTFLDVSENIFSGLSELPPNL 266
Query: 505 PNDIGQNLPFLTDLGNLKQLITLVISNNNLSGEIPLLFSNISFLYILDMSNNSLSGSTPE 564
+ + L L +SNN L E+P L L L S N L+ PE
Sbjct: 267 YYLNASSNEIRSLCDLPPSLEELNVSNNKLI-ELPALPPR---LERLIASFNHLA-EVPE 321
Query: 565 SIGSLRTVKFLVLRNNYLSG--KLPLSLKN 592
+L+ L + N L +P S+++
Sbjct: 322 LPQNLKQ---LHVEYNPLREFPDIPESVED 348
|
| >d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Leucine rich effector protein YopM domain: Leucine rich effector protein YopM species: Yersinia pestis [TaxId: 632]
Score = 41.3 bits (95), Expect = 2e-04
Identities = 52/312 (16%), Positives = 88/312 (28%), Gaps = 26/312 (8%)
Query: 112 LKDLEYLDLSMNNFTGFQVPEFIGSLKELRYLNLSGSFFSGTIPQTLGNLSNLLYLDLNN 171
LE L S N+ T ++PE SLK L N + + L +L LL +
Sbjct: 57 PPHLESLVASCNSLT--ELPELPQSLKSLLVDNNN--------LKALSDLPPLLEYLGVS 106
Query: 172 FLDQSNQIDLEWLSGLSSLVYFNLG----GADLSKAGAYWLEVFNKLHSFVELHLPNCNL 227
+L+ S L + N +LP
Sbjct: 107 NNQLEKLPELQNSSFLKIIDVDNNSLKKLPDLPPSLEFIAAGNNQLEELPELQNLPFLTA 166
Query: 228 PSLPLSFPSLNFASLQVLDLSNNDFNSTTPHWLFNITSLLCLDLGSNDLQGDIPDGFASL 287
+ L+ N L N+L +PD SL
Sbjct: 167 IYADNNSLKKLPDLPLSLESIVAGNNILEELPELQNLPFLTTIYADNNLLKTLPDLPPSL 226
Query: 288 NSLQELDLSGNSFLGGQLSRNLGKLCNLRTMILSRNNISSEVSDFLDGLSECTNSIL--L 345
+L D S + LS + + + L
Sbjct: 227 EALNVRDNYLTDLPELPQSLTFLDVSENIFSGLSELPPNLYYLNASSNEIRSLCDLPPSL 286
Query: 346 EKLELRFNQFTGILPISLGSLKNLRHLVLWQNSFLGSIPPSIGNLTLLKELYLASNQMNG 405
E+L + N+ + L L+ N L +P N LK+L++ N +
Sbjct: 287 EELNVSNNKLIELPA----LPPRLERLIASFNH-LAEVPELPQN---LKQLHVEYNPL-- 336
Query: 406 QKISDSYQHLKN 417
++ D + +++
Sbjct: 337 REFPDIPESVED 348
|
| >d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Leucine rich effector protein YopM domain: Leucine rich effector protein YopM species: Yersinia pestis [TaxId: 632]
Score = 38.7 bits (88), Expect = 0.002
Identities = 18/93 (19%), Positives = 32/93 (34%), Gaps = 10/93 (10%)
Query: 224 NCNLPSLPLSFPSLNFASLQVLDLSNNDFNSTTPHWLFNITSLLCLDLGSNDLQGDIPDG 283
N S + SL+ L++SNN L L N L ++P+
Sbjct: 268 YLNASSNEIRSLCDLPPSLEELNVSNNKLIELPA----LPPRLERLIASFNHLA-EVPE- 321
Query: 284 FASLNSLQELDLSGNSFLGGQLSRNLGKLCNLR 316
+L++L + N + + +LR
Sbjct: 322 --LPQNLKQLHVEYNPLR--EFPDIPESVEDLR 350
|
| >d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Leucine rich effector protein YopM domain: Leucine rich effector protein YopM species: Yersinia pestis [TaxId: 632]
Score = 37.5 bits (85), Expect = 0.004
Identities = 52/335 (15%), Positives = 101/335 (30%), Gaps = 28/335 (8%)
Query: 241 SLQVLDLSNNDFNSTTPHWLFNITSLLCLDLGSNDLQGDIPDGFASL--NSLQELDLSGN 298
L+L+N S+ P ++ S L N L ++P+ SL + +L
Sbjct: 39 QAHELELNNLGL-SSLPELPPHLES---LVASCNSLT-ELPELPQSLKSLLVDNNNLKAL 93
Query: 299 SFLGGQLSRNLGKLCNLRTMILSRNNISSEVSDFLDGLSECTNSILLEKLELRFNQFTGI 358
S L L L + +N+ ++ D + + + +
Sbjct: 94 SDLPPLLEYLGVSNNQLEKLPELQNSSFLKIIDVDNNSLKKLPDLPPSLEFIAAGNNQLE 153
Query: 359 LPISLGSLKNLRHLVLWQNSFLGSIPPSIGNLTLLKELYLASNQMNGQKISD-SYQHLKN 417
L +L L + NS + +++ + Q + + + N
Sbjct: 154 ELPELQNLPFLTAIYADNNSLKKLPDLPLSLESIVAGNNILEELPELQNLPFLTTIYADN 213
Query: 418 QTELRTLVLNKARISDTISDWFWQLSLTLDELDVAYNELRGRVPNSLGFNFPAKVDLSFN 477
L + + + D + L + + + +
Sbjct: 214 NLLKTLPDLPPSLEALNVRDNYLTDLPELPQSLTFLDVSENIFSGLSELPPNLYYLNASS 273
Query: 478 NFEGRLLLWSFNVTKLYLRDNSFSGLIPNDIGQNLPFLTDLGNLKQLITLVISNNNLSGE 537
N L ++ +L + +N L +L L+ S N+L+ E
Sbjct: 274 NEIRSLCDLPPSLEELNVSNNKLIELPA--------------LPPRLERLIASFNHLA-E 318
Query: 538 IPLLFSNISFLYILDMSNNSLSG--STPESIGSLR 570
+P L N L L + N L PES+ LR
Sbjct: 319 VPELPQN---LKQLHVEYNPLREFPDIPESVEDLR 350
|
| >d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 38.2 bits (88), Expect = 6e-04
Identities = 24/114 (21%), Positives = 35/114 (30%), Gaps = 5/114 (4%)
Query: 107 PSLLQLKDLEYLDLSMNNFTGFQVPEFIGSLKELRYLNLSGSFFSGTIPQTLGNLSNLLY 166
L QL + +LDLS N + +L+ L L S + L
Sbjct: 14 CHLEQLLLVTHLDLSHNRLRALP--PALAALRCLEVLQASDNALENVDGVANLPRLQELL 71
Query: 167 LDLNNFLDQSNQIDLEWLSGLSSLVYFNLGGADLSKAGAYWLEVFNKLHSFVEL 220
L N ++ L LV NL G L + + L S +
Sbjct: 72 LCNNRL---QQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSI 122
|
| >d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 37.4 bits (86), Expect = 8e-04
Identities = 29/130 (22%), Positives = 50/130 (38%), Gaps = 11/130 (8%)
Query: 243 QVLDLSNNDFNSTTPHWLFNITSLLCLDLGSNDLQGDIPDGFASLNSLQELDLSGNSFLG 302
+VL L++ D T L + + LDL N L+ P +L +L+ L++ S
Sbjct: 1 RVLHLAHKDL--TVLCHLEQLLLVTHLDLSHNRLRALPP----ALAALRCLEVLQASDNA 54
Query: 303 GQLSRNLGKLCNLRTMILSRNNISSEVSDFLDGLSECTNSILLEKLELRFNQFTGILPIS 362
+ + L L+ ++L N + S + L C L L L+ N I
Sbjct: 55 LENVDGVANLPRLQELLLCNNRLQQ--SAAIQPLVSCPR---LVLLNLQGNSLCQEEGIQ 109
Query: 363 LGSLKNLRHL 372
+ L +
Sbjct: 110 ERLAEMLPSV 119
|
| >d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 36.6 bits (84), Expect = 0.001
Identities = 24/112 (21%), Positives = 39/112 (34%), Gaps = 10/112 (8%)
Query: 141 RYLNLSGSFFSGTIPQTLGNLSNLLYLDLNNFLDQSNQIDLEWLSGLSSLVYFNLGGADL 200
R L+L+ T+ L L + +LDL++ ++ L L L
Sbjct: 1 RVLHLAHKDL--TVLCHLEQLLLVTHLDLSHNRLRALPPALAAL--------RCLEVLQA 50
Query: 201 SKAGAYWLEVFNKLHSFVELHLPNCNLPSLPLSFPSLNFASLQVLDLSNNDF 252
S ++ L EL L N L P ++ L +L+L N
Sbjct: 51 SDNALENVDGVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSL 102
|
| >d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]} Length = 210 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin B species: Listeria monocytogenes [TaxId: 1639]
Score = 36.9 bits (84), Expect = 0.003
Identities = 26/209 (12%), Positives = 65/209 (31%), Gaps = 27/209 (12%)
Query: 347 KLELRFNQFTGILPISLGSLKNLRHLVLWQNSFLGSIPPSIGNLTLLKELYLASNQMNGQ 406
K L+ T ++ L ++ ++ + I L + +L+L N++
Sbjct: 28 KDNLKKKSVTDA--VTQNELNSIDQIIANNSDIKSVQG--IQYLPNVTKLFLNGNKLTDI 83
Query: 407 KISDSYQHLKNQTELRTLVLNKARISDTISDWFWQLSLTLDELDVAYNELRGRVPNSLGF 466
K + ++L V + + + D +
Sbjct: 84 KPLANLKNLGWLFLDENKVKDLSSLKDLKKLKSL---------------------SLEHN 122
Query: 467 NFPAKVDLSFNNFEGRLLLWSFNVTKLYLRDNSFSGLIPNDIGQNLPFLTDLGNLKQLIT 526
L L L + +T + + + + + L L +L
Sbjct: 123 GISDINGLVHLPQLESLYLGNNKITDITVLSRLTKLDTLSLEDNQISDIVPLAGLTKLQN 182
Query: 527 LVISNNNLSGEIPLLFSNISFLYILDMSN 555
L +S N++S ++ + + L +L++ +
Sbjct: 183 LYLSKNHIS-DLR-ALAGLKNLDVLELFS 209
|
| >d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]} Length = 210 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin B species: Listeria monocytogenes [TaxId: 1639]
Score = 36.9 bits (84), Expect = 0.004
Identities = 33/201 (16%), Positives = 67/201 (33%), Gaps = 19/201 (9%)
Query: 234 FPSLNFASLQVLDLSNNDFNSTTPHWLFNITSLLCLDLGSNDLQGDIPDGFASLNSLQEL 293
F FA +L + S+ + ++D++ G L ++ +L
Sbjct: 18 FSDDAFAETIKDNLKKKSVTDAVT--QNELNSIDQIIANNSDIKS--VQGIQYLPNVTKL 73
Query: 294 DLSGNSFLGGQLSRNLGKLCNLRTMILSRNNISSEVSDFLDGLSECTNSILLEKLELRFN 353
L+GN + NL L L ++SS ++ + + L
Sbjct: 74 FLNGNKLTDIKPLANLKNLGWLFLDENKVKDLSSLKDLKKLKSLSLEHNGISDINGLVHL 133
Query: 354 QFTGILPISLGSLKNLRH--------LVLWQNSFLGSIPPSIGNLTLLKELYLASNQMNG 405
L + + ++ + +++ + I P + LT L+ LYL+ N ++
Sbjct: 134 PQLESLYLGNNKITDITVLSRLTKLDTLSLEDNQISDIVP-LAGLTKLQNLYLSKNHIS- 191
Query: 406 QKISDSYQHLKNQTELRTLVL 426
+ L L L L
Sbjct: 192 -----DLRALAGLKNLDVLEL 207
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 598 | |||
| d1ogqa_ | 313 | Polygalacturonase inhibiting protein PGIP {Kidney | 100.0 | |
| d1ogqa_ | 313 | Polygalacturonase inhibiting protein PGIP {Kidney | 99.96 | |
| d2omza2 | 384 | Internalin A {Listeria monocytogenes [TaxId: 1639] | 99.96 | |
| d2omza2 | 384 | Internalin A {Listeria monocytogenes [TaxId: 1639] | 99.94 | |
| d1xkua_ | 305 | Decorin {Cow (Bos taurus) [TaxId: 9913]} | 99.91 | |
| d1xkua_ | 305 | Decorin {Cow (Bos taurus) [TaxId: 9913]} | 99.91 | |
| d1ozna_ | 284 | Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma | 99.89 | |
| d1ozna_ | 284 | Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma | 99.89 | |
| d1p9ag_ | 266 | von Willebrand factor binding domain of glycoprote | 99.85 | |
| d1p9ag_ | 266 | von Willebrand factor binding domain of glycoprote | 99.85 | |
| d1jl5a_ | 353 | Leucine rich effector protein YopM {Yersinia pesti | 99.84 | |
| d1jl5a_ | 353 | Leucine rich effector protein YopM {Yersinia pesti | 99.83 | |
| d1z7xw1 | 460 | Ribonuclease inhibitor {Human (Homo sapiens) [TaxI | 99.83 | |
| d1z7xw1 | 460 | Ribonuclease inhibitor {Human (Homo sapiens) [TaxI | 99.77 | |
| d1h6ua2 | 227 | Internalin H {Listeria monocytogenes [TaxId: 1639] | 99.73 | |
| d1h6ua2 | 227 | Internalin H {Listeria monocytogenes [TaxId: 1639] | 99.71 | |
| d1h6ta2 | 210 | Internalin B {Listeria monocytogenes [TaxId: 1639] | 99.69 | |
| d2omxa2 | 199 | Internalin B {Listeria monocytogenes [TaxId: 1639] | 99.69 | |
| d1xwdc1 | 242 | Follicle-stimulating hormone receptor {Human (Homo | 99.67 | |
| d2astb2 | 284 | Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa | 99.66 | |
| d1xwdc1 | 242 | Follicle-stimulating hormone receptor {Human (Homo | 99.65 | |
| d1h6ta2 | 210 | Internalin B {Listeria monocytogenes [TaxId: 1639] | 99.65 | |
| d2astb2 | 284 | Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa | 99.64 | |
| d2omxa2 | 199 | Internalin B {Listeria monocytogenes [TaxId: 1639] | 99.63 | |
| d1w8aa_ | 192 | Slit {Fruit fly (Drosophila melanogaster) [TaxId: | 99.6 | |
| d1w8aa_ | 192 | Slit {Fruit fly (Drosophila melanogaster) [TaxId: | 99.56 | |
| d2ca6a1 | 344 | Rna1p (RanGAP1), N-terminal domain {Fission yeast | 99.54 | |
| d2ca6a1 | 344 | Rna1p (RanGAP1), N-terminal domain {Fission yeast | 99.54 | |
| d1dcea3 | 124 | Rab geranylgeranyltransferase alpha-subunit, C-ter | 99.46 | |
| d1dcea3 | 124 | Rab geranylgeranyltransferase alpha-subunit, C-ter | 99.45 | |
| d1a9na_ | 162 | Splicesomal U2A' protein {Human (Homo sapiens) [Ta | 99.43 | |
| d1a9na_ | 162 | Splicesomal U2A' protein {Human (Homo sapiens) [Ta | 99.43 | |
| d1m9la_ | 198 | Outer arm dynein light chain 1 {Green algae (Chlam | 99.14 | |
| d1m9la_ | 198 | Outer arm dynein light chain 1 {Green algae (Chlam | 99.11 | |
| d2ifga3 | 156 | High affinity nerve growth factor receptor, N-term | 99.07 | |
| d2ifga3 | 156 | High affinity nerve growth factor receptor, N-term | 99.03 | |
| d1koha1 | 162 | mRNA export factor tap {Human (Homo sapiens) [TaxI | 98.17 | |
| d1koha1 | 162 | mRNA export factor tap {Human (Homo sapiens) [TaxI | 98.01 | |
| d1pgva_ | 167 | Tropomodulin C-terminal domain {nematode (Caenorha | 97.94 | |
| d1pgva_ | 167 | Tropomodulin C-terminal domain {nematode (Caenorha | 97.87 | |
| d1io0a_ | 166 | Tropomodulin C-terminal domain {Chicken (Gallus ga | 97.43 | |
| d1io0a_ | 166 | Tropomodulin C-terminal domain {Chicken (Gallus ga | 97.41 |
| >d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Polygalacturonase inhibiting protein PGIP domain: Polygalacturonase inhibiting protein PGIP species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]
Probab=100.00 E-value=2.7e-39 Score=318.70 Aligned_cols=292 Identities=32% Similarity=0.476 Sum_probs=193.0
Q ss_pred CCCHHHHHHHHHHHhcCCCCCCCCCCC-CCCCCCC--cccEEecCCC--CcEEEEEcCCCCCCCCCCcccCCCCCcce--
Q 037325 31 GCQEAERKALLQFKQSLRDPSGQLSSW-VGEDCCS--WSGVSCNNRT--ASVIKLNLNNPFRDSFGSFEDDAGHELGG-- 103 (598)
Q Consensus 31 ~~~~~~~~~l~~~~~~~~~~~~~~~~W-~~~~~c~--w~gv~c~~~~--~~v~~L~L~~~~~~~~~~~~~~~~~~l~~-- 103 (598)
-|.++||+||++||+++.+|. .+.+| .+.|||. |+||+|++.+ +||++|||++ +++.|
T Consensus 2 ~c~~~e~~aLl~~k~~~~~~~-~l~sW~~~~d~C~~~w~gv~C~~~~~~~~v~~L~L~~--------------~~l~g~~ 66 (313)
T d1ogqa_ 2 LCNPQDKQALLQIKKDLGNPT-TLSSWLPTTDCCNRTWLGVLCDTDTQTYRVNNLDLSG--------------LNLPKPY 66 (313)
T ss_dssp CSCHHHHHHHHHHHHHTTCCG-GGTTCCTTSCTTTTCSTTEEECCSSSCCCEEEEEEEC--------------CCCSSCE
T ss_pred CCCHHHHHHHHHHHHHCCCCC-cCCCCCCCCCCCCCcCCCeEEeCCCCcEEEEEEECCC--------------CCCCCCC
Confidence 499999999999999998775 68899 6889994 9999998644 4899999998 67776
Q ss_pred ecCccccCCCCCCEEeCCC-CCCCCCCcchhccCCCCCCEEECcCCCCCcccchhccCCCCCCEEEccCCCCCCCccChh
Q 037325 104 EISPSLLQLKDLEYLDLSM-NNFTGFQVPEFIGSLKELRYLNLSGSFFSGTIPQTLGNLSNLLYLDLNNFLDQSNQIDLE 182 (598)
Q Consensus 104 ~~~~~l~~l~~L~~L~Ls~-n~l~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~~~~~~~~~~ 182 (598)
.+|+.++++++|++|+|++ |++++. +|..++++++|++|+|++|++.+..+..+..+.+|+++++++|..
T Consensus 67 ~lp~~l~~L~~L~~L~Ls~~N~l~g~-iP~~i~~L~~L~~L~Ls~N~l~~~~~~~~~~~~~L~~l~l~~N~~-------- 137 (313)
T d1ogqa_ 67 PIPSSLANLPYLNFLYIGGINNLVGP-IPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNAL-------- 137 (313)
T ss_dssp ECCGGGGGCTTCSEEEEEEETTEESC-CCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEE--------
T ss_pred CCChHHhcCccccccccccccccccc-cccccccccccchhhhccccccccccccccchhhhcccccccccc--------
Confidence 5788899999999999986 788875 888888899999999999988877777777777777766665432
Q ss_pred hhcCCCCCcEEEcCCCCCCCCcccchHhhhcCCCCCEEEcCCCCCCCCCCCCCcCCCCCccEEEccCCCCCCCcchhhhc
Q 037325 183 WLSGLSSLVYFNLGGADLSKAGAYWLEVFNKLHSFVELHLPNCNLPSLPLSFPSLNFASLQVLDLSNNDFNSTTPHWLFN 262 (598)
Q Consensus 183 ~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~ 262 (598)
.... +. .+..++.++++++++|.+.+.+|..+..
T Consensus 138 ------------------~~~~---p~-------------------------~l~~l~~L~~l~l~~n~l~~~ip~~~~~ 171 (313)
T d1ogqa_ 138 ------------------SGTL---PP-------------------------SISSLPNLVGITFDGNRISGAIPDSYGS 171 (313)
T ss_dssp ------------------ESCC---CG-------------------------GGGGCTTCCEEECCSSCCEEECCGGGGC
T ss_pred ------------------cccC---ch-------------------------hhccCcccceeecccccccccccccccc
Confidence 1111 12 2233344555555555555555555555
Q ss_pred CCCC-CEEEccCCcccccCCccccCCCCccEEECcCCCcCccccchhhcCCCCCCEEecccccCCcccchhhhCCCCCCC
Q 037325 263 ITSL-LCLDLGSNDLQGDIPDGFASLNSLQELDLSGNSFLGGQLSRNLGKLCNLRTMILSRNNISSEVSDFLDGLSECTN 341 (598)
Q Consensus 263 l~~L-~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~~~~ 341 (598)
+..+ +.+++++|++++..|..+..+.. ..+++.++. ..+.+|..+..+++++.++++++.+.+.++ .+..++
T Consensus 172 l~~l~~~l~~~~n~l~~~~~~~~~~l~~-~~l~l~~~~-~~~~~~~~~~~~~~l~~l~~~~~~l~~~~~-~~~~~~---- 244 (313)
T d1ogqa_ 172 FSKLFTSMTISRNRLTGKIPPTFANLNL-AFVDLSRNM-LEGDASVLFGSDKNTQKIHLAKNSLAFDLG-KVGLSK---- 244 (313)
T ss_dssp CCTTCCEEECCSSEEEEECCGGGGGCCC-SEEECCSSE-EEECCGGGCCTTSCCSEEECCSSEECCBGG-GCCCCT----
T ss_pred cccccccccccccccccccccccccccc-ccccccccc-cccccccccccccccccccccccccccccc-cccccc----
Confidence 5443 55566666665555555544432 245555555 445555555555556666665555554433 233333
Q ss_pred CCCccEEEccCccccccCccccCCCCCCCEEEccCCcCCccchhhccCCCCCCEEeCcCCc
Q 037325 342 SILLEKLELRFNQFTGILPISLGSLKNLRHLVLWQNSFLGSIPPSIGNLTLLKELYLASNQ 402 (598)
Q Consensus 342 ~~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~ls~n~l~~~~~~~l~~l~~L~~L~l~~n~ 402 (598)
+|++|++++|+++|.+|..++.+++|++|++++|+++|.+|. +..+++|+.+++++|+
T Consensus 245 --~L~~L~Ls~N~l~g~iP~~l~~L~~L~~L~Ls~N~l~g~iP~-~~~L~~L~~l~l~~N~ 302 (313)
T d1ogqa_ 245 --NLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQ-GGNLQRFDVSAYANNK 302 (313)
T ss_dssp --TCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCC-STTGGGSCGGGTCSSS
T ss_pred --ccccccCccCeecccCChHHhCCCCCCEEECcCCcccccCCC-cccCCCCCHHHhCCCc
Confidence 566666666666666666666666666666666666655553 4555566666666654
|
| >d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Polygalacturonase inhibiting protein PGIP domain: Polygalacturonase inhibiting protein PGIP species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]
Probab=99.96 E-value=2.7e-30 Score=253.75 Aligned_cols=230 Identities=27% Similarity=0.392 Sum_probs=152.3
Q ss_pred CccEEEccC-ccccccCccccCCCCCCCEEEccCCcCCccchhhccCCCCCCEEeCcCCcCCcccCCCchhhhcCCCCCC
Q 037325 344 LLEKLELRF-NQFTGILPISLGSLKNLRHLVLWQNSFLGSIPPSIGNLTLLKELYLASNQMNGQKISDSYQHLKNQTELR 422 (598)
Q Consensus 344 ~L~~L~Ls~-n~l~~~~~~~l~~l~~L~~L~ls~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~~~~L~ 422 (598)
+|++|++++ |++.|.+|..++++++|++|++++|++.+..+..+..+.+|+.+++++|.+.+.. |. .+.+++.++
T Consensus 77 ~L~~L~Ls~~N~l~g~iP~~i~~L~~L~~L~Ls~N~l~~~~~~~~~~~~~L~~l~l~~N~~~~~~-p~---~l~~l~~L~ 152 (313)
T d1ogqa_ 77 YLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTL-PP---SISSLPNLV 152 (313)
T ss_dssp TCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEEESCC-CG---GGGGCTTCC
T ss_pred cccccccccccccccccccccccccccchhhhccccccccccccccchhhhcccccccccccccC-ch---hhccCcccc
Confidence 444444443 3444444555555555555555555555444444455555555555555444333 22 234445555
Q ss_pred EEEccCccCccccchHHHhcCCCCCEEEccCCcCcccCCCCcccCCCCEEEcccCcCcccCCCC---CcCCcEEEccCCc
Q 037325 423 TLVLNKARISDTISDWFWQLSLTLDELDVAYNELRGRVPNSLGFNFPAKVDLSFNNFEGRLLLW---SFNVTKLYLRDNS 499 (598)
Q Consensus 423 ~L~l~~n~l~~~~~~~~~~~~~~L~~L~ls~n~~~~~~p~~~~~~~L~~l~ls~n~l~~~~~~~---~~~L~~L~ls~n~ 499 (598)
.+++++|++.+.+|..+......++.+++++|++++..|..+.......++++++.+.+.+|.. +++++.+++++|.
T Consensus 153 ~l~l~~n~l~~~ip~~~~~l~~l~~~l~~~~n~l~~~~~~~~~~l~~~~l~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~ 232 (313)
T d1ogqa_ 153 GITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLNLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNS 232 (313)
T ss_dssp EEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCCCSEEECCSSEEEECCGGGCCTTSCCSEEECCSSE
T ss_pred eeeccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 5555555555555554444333346666666666666666665555556666666666666554 4688999999999
Q ss_pred ccccCCchhhcccCCCCCccccCCCCeEeCcCCccccccchhccCCCCCCEEECCCCcCccccchhccCCCCCCEEEccC
Q 037325 500 FSGLIPNDIGQNLPFLTDLGNLKQLITLVISNNNLSGEIPLLFSNISFLYILDMSNNSLSGSTPESIGSLRTVKFLVLRN 579 (598)
Q Consensus 500 l~~~~p~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~l~~l~~L~~L~l~~ 579 (598)
+++.+| .++. +++|+.|+|++|+++|.+|..|+++++|++|+|++|+++|.+|. ++++++|+.+++++
T Consensus 233 l~~~~~-~~~~----------~~~L~~L~Ls~N~l~g~iP~~l~~L~~L~~L~Ls~N~l~g~iP~-~~~L~~L~~l~l~~ 300 (313)
T d1ogqa_ 233 LAFDLG-KVGL----------SKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQ-GGNLQRFDVSAYAN 300 (313)
T ss_dssp ECCBGG-GCCC----------CTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCC-STTGGGSCGGGTCS
T ss_pred cccccc-cccc----------ccccccccCccCeecccCChHHhCCCCCCEEECcCCcccccCCC-cccCCCCCHHHhCC
Confidence 987655 4554 78999999999999999999999999999999999999999995 68899999999999
Q ss_pred CC-Cccc-CCcC
Q 037325 580 NY-LSGK-LPLS 589 (598)
Q Consensus 580 n~-l~g~-~P~~ 589 (598)
|+ ++|. +|.+
T Consensus 301 N~~l~g~plp~c 312 (313)
T d1ogqa_ 301 NKCLCGSPLPAC 312 (313)
T ss_dssp SSEEESTTSSCC
T ss_pred CccccCCCCCCC
Confidence 98 6764 6643
|
| >d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin A species: Listeria monocytogenes [TaxId: 1639]
Probab=99.96 E-value=2.2e-26 Score=232.74 Aligned_cols=343 Identities=26% Similarity=0.315 Sum_probs=168.2
Q ss_pred cCCCCCCEEeCCCCCCCCCCcchhccCCCCCCEEECcCCCCCcccchhccCCCCCCEEEccCCCCCCCccChhhhcCCCC
Q 037325 110 LQLKDLEYLDLSMNNFTGFQVPEFIGSLKELRYLNLSGSFFSGTIPQTLGNLSNLLYLDLNNFLDQSNQIDLEWLSGLSS 189 (598)
Q Consensus 110 ~~l~~L~~L~Ls~n~l~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~~l~~ 189 (598)
..+.+|++|+++++.++. + +.+..+++|++|++++|++++ +|. ++++++|++|++++|.+
T Consensus 41 ~~l~~l~~L~l~~~~I~~--l-~gl~~L~nL~~L~Ls~N~l~~-l~~-l~~L~~L~~L~L~~n~i--------------- 100 (384)
T d2omza2 41 TDLDQVTTLQADRLGIKS--I-DGVEYLNNLTQINFSNNQLTD-ITP-LKNLTKLVDILMNNNQI--------------- 100 (384)
T ss_dssp HHHTTCCEEECCSSCCCC--C-TTGGGCTTCCEEECCSSCCCC-CGG-GTTCTTCCEEECCSSCC---------------
T ss_pred HHhCCCCEEECCCCCCCC--c-cccccCCCCCEEeCcCCcCCC-Ccc-ccCCccccccccccccc---------------
Confidence 345667777777776663 2 245566777777777777663 332 56666666666666544
Q ss_pred CcEEEcCCCCCCCCcccchHhhhcCCCCCEEEcCCCCCCCCCCCCCcCCCCCccEEEccCCCCCCCcchhhhcCCCCCEE
Q 037325 190 LVYFNLGGADLSKAGAYWLEVFNKLHSFVELHLPNCNLPSLPLSFPSLNFASLQVLDLSNNDFNSTTPHWLFNITSLLCL 269 (598)
Q Consensus 190 L~~L~l~~n~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L 269 (598)
.+.. .+..+++|+.|+++++.+++... ......+.......+.+.................
T Consensus 101 -----------~~i~-----~l~~l~~L~~L~~~~~~~~~~~~---~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 161 (384)
T d2omza2 101 -----------ADIT-----PLANLTNLTGLTLFNNQITDIDP---LKNLTNLNRLELSSNTISDISALSGLTSLQQLSF 161 (384)
T ss_dssp -----------CCCG-----GGTTCTTCCEEECCSSCCCCCGG---GTTCTTCSEEEEEEEEECCCGGGTTCTTCSEEEE
T ss_pred -----------cccc-----ccccccccccccccccccccccc---cccccccccccccccccccccccccccccccccc
Confidence 3221 23344444444444444443322 1122334444444443332222111111111111
Q ss_pred EccCCcccccCCccccCCCCccEEECcCCCcCccccchhhcCCCCCCEEecccccCCcccchhhhCCCCCCCCCCccEEE
Q 037325 270 DLGSNDLQGDIPDGFASLNSLQELDLSGNSFLGGQLSRNLGKLCNLRTMILSRNNISSEVSDFLDGLSECTNSILLEKLE 349 (598)
Q Consensus 270 ~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~~~~~~~L~~L~ 349 (598)
.... .....+.............+. .........+++++.+++++|.+++..+ +...+ +|++|+
T Consensus 162 ~~~~-----~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~l~~~~~l~l~~n~i~~~~~--~~~~~------~L~~L~ 225 (384)
T d2omza2 162 GNQV-----TDLKPLANLTTLERLDISSNK---VSDISVLAKLTNLESLIATNNQISDITP--LGILT------NLDELS 225 (384)
T ss_dssp EESC-----CCCGGGTTCTTCCEEECCSSC---CCCCGGGGGCTTCSEEECCSSCCCCCGG--GGGCT------TCCEEE
T ss_pred cccc-----chhhhhccccccccccccccc---cccccccccccccceeeccCCccCCCCc--ccccC------CCCEEE
Confidence 1111 111122233333333444433 1122334445555555555555544332 11222 455555
Q ss_pred ccCccccccCccccCCCCCCCEEEccCCcCCccchhhccCCCCCCEEeCcCCcCCcccCCCchhhhcCCCCCCEEEccCc
Q 037325 350 LRFNQFTGILPISLGSLKNLRHLVLWQNSFLGSIPPSIGNLTLLKELYLASNQMNGQKISDSYQHLKNQTELRTLVLNKA 429 (598)
Q Consensus 350 Ls~n~l~~~~~~~l~~l~~L~~L~ls~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~~~~L~~L~l~~n 429 (598)
+++|.+++ + ..+..+++|+.+++++|.+++..+ +..+++|+++++++|++++.. .+..
T Consensus 226 l~~n~l~~-~-~~l~~l~~L~~L~l~~n~l~~~~~--~~~~~~L~~L~l~~~~l~~~~------~~~~------------ 283 (384)
T d2omza2 226 LNGNQLKD-I-GTLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNIS------PLAG------------ 283 (384)
T ss_dssp CCSSCCCC-C-GGGGGCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCCCCG------GGTT------------
T ss_pred CCCCCCCC-c-chhhcccccchhccccCccCCCCc--ccccccCCEeeccCcccCCCC------cccc------------
Confidence 55555442 1 134444555555555555443221 344445555555544443321 1233
Q ss_pred cCccccchHHHhcCCCCCEEEccCCcCcccCCCCcccCCCCEEEcccCcCcccCCCCCcCCcEEEccCCcccccCCchhh
Q 037325 430 RISDTISDWFWQLSLTLDELDVAYNELRGRVPNSLGFNFPAKVDLSFNNFEGRLLLWSFNVTKLYLRDNSFSGLIPNDIG 509 (598)
Q Consensus 430 ~l~~~~~~~~~~~~~~L~~L~ls~n~~~~~~p~~~~~~~L~~l~ls~n~l~~~~~~~~~~L~~L~ls~n~l~~~~p~~~~ 509 (598)
++.++.++++.|.+++. + . ...+++++.|++++|++++.. .+.
T Consensus 284 -------------~~~l~~l~~~~n~l~~~-~-~--------------------~~~~~~l~~L~ls~n~l~~l~--~l~ 326 (384)
T d2omza2 284 -------------LTALTNLELNENQLEDI-S-P--------------------ISNLKNLTYLTLYFNNISDIS--PVS 326 (384)
T ss_dssp -------------CTTCSEEECCSSCCSCC-G-G--------------------GGGCTTCSEEECCSSCCSCCG--GGG
T ss_pred -------------ccccccccccccccccc-c-c--------------------cchhcccCeEECCCCCCCCCc--ccc
Confidence 34455555555544421 0 0 112345666666666666432 133
Q ss_pred cccCCCCCccccCCCCeEeCcCCccccccchhccCCCCCCEEECCCCcCccccchhccCCCCCCEEEccCC
Q 037325 510 QNLPFLTDLGNLKQLITLVISNNNLSGEIPLLFSNISFLYILDMSNNSLSGSTPESIGSLRTVKFLVLRNN 580 (598)
Q Consensus 510 ~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~l~~l~~L~~L~l~~n 580 (598)
. +++|++|++++|+++ .++ .++++++|++|++++|++++..| +.++++|++|++++|
T Consensus 327 ~----------l~~L~~L~L~~n~l~-~l~-~l~~l~~L~~L~l~~N~l~~l~~--l~~l~~L~~L~L~~N 383 (384)
T d2omza2 327 S----------LTKLQRLFFANNKVS-DVS-SLANLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQ 383 (384)
T ss_dssp G----------CTTCCEEECCSSCCC-CCG-GGGGCTTCCEEECCSSCCCBCGG--GTTCTTCSEEECCCE
T ss_pred c----------CCCCCEEECCCCCCC-CCh-hHcCCCCCCEEECCCCcCCCChh--hccCCCCCEeeCCCC
Confidence 3 778888888888887 344 47788888888888888886544 778888888888876
|
| >d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin A species: Listeria monocytogenes [TaxId: 1639]
Probab=99.94 E-value=9e-25 Score=220.75 Aligned_cols=135 Identities=27% Similarity=0.307 Sum_probs=94.9
Q ss_pred CCCCCEEEccCCcCcccCCCCcccC-CCCEEEcccCcCcccCC-CCCcCCcEEEccCCcccccCCchhhcccCCCCCccc
Q 037325 443 SLTLDELDVAYNELRGRVPNSLGFN-FPAKVDLSFNNFEGRLL-LWSFNVTKLYLRDNSFSGLIPNDIGQNLPFLTDLGN 520 (598)
Q Consensus 443 ~~~L~~L~ls~n~~~~~~p~~~~~~-~L~~l~ls~n~l~~~~~-~~~~~L~~L~ls~n~l~~~~p~~~~~~~~~~~~~~~ 520 (598)
+++|+.+++++|.+++..+ +... .++.++++++++.+..+ ..++.++.++++.|++++. ..+..
T Consensus 240 l~~L~~L~l~~n~l~~~~~--~~~~~~L~~L~l~~~~l~~~~~~~~~~~l~~l~~~~n~l~~~--~~~~~---------- 305 (384)
T d2omza2 240 LTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNISPLAGLTALTNLELNENQLEDI--SPISN---------- 305 (384)
T ss_dssp CTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCCCCGGGTTCTTCSEEECCSSCCSCC--GGGGG----------
T ss_pred ccccchhccccCccCCCCc--ccccccCCEeeccCcccCCCCccccccccccccccccccccc--cccch----------
Confidence 3444455555444443221 1111 45555555555544322 2356788999999998852 23444
Q ss_pred cCCCCeEeCcCCccccccchhccCCCCCCEEECCCCcCccccchhccCCCCCCEEEccCCCCcccCCcCccCcCCCC
Q 037325 521 LKQLITLVISNNNLSGEIPLLFSNISFLYILDMSNNSLSGSTPESIGSLRTVKFLVLRNNYLSGKLPLSLKNCTFQE 597 (598)
Q Consensus 521 l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~l~~l~~L~~L~l~~n~l~g~~P~~~~~~~~L~ 597 (598)
+++++.|++++|++++..| +.++++|++|++++|++++ +| .+.++++|++|++++|++++..| +.++++|+
T Consensus 306 ~~~l~~L~ls~n~l~~l~~--l~~l~~L~~L~L~~n~l~~-l~-~l~~l~~L~~L~l~~N~l~~l~~--l~~l~~L~ 376 (384)
T d2omza2 306 LKNLTYLTLYFNNISDISP--VSSLTKLQRLFFANNKVSD-VS-SLANLTNINWLSAGHNQISDLTP--LANLTRIT 376 (384)
T ss_dssp CTTCSEEECCSSCCSCCGG--GGGCTTCCEEECCSSCCCC-CG-GGGGCTTCCEEECCSSCCCBCGG--GTTCTTCS
T ss_pred hcccCeEECCCCCCCCCcc--cccCCCCCEEECCCCCCCC-Ch-hHcCCCCCCEEECCCCcCCCChh--hccCCCCC
Confidence 8999999999999996543 8899999999999999984 55 68999999999999999997655 77777775
|
| >d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Decorin species: Cow (Bos taurus) [TaxId: 9913]
Probab=99.91 E-value=1.6e-22 Score=197.16 Aligned_cols=275 Identities=20% Similarity=0.224 Sum_probs=147.0
Q ss_pred ccEEEccCCCCCCCcchhhhcCCCCCEEEccCCcccccCCccccCCCCccEEECcCCCcCccccchhhcCCCCCCEEecc
Q 037325 242 LQVLDLSNNDFNSTTPHWLFNITSLLCLDLGSNDLQGDIPDGFASLNSLQELDLSGNSFLGGQLSRNLGKLCNLRTMILS 321 (598)
Q Consensus 242 L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~l~~l~~L~~L~l~ 321 (598)
.+.++-++++++ .+|..+ .+++++|++++|+++...+..|.++++|++|++++|. .....|..|..+++|++|+++
T Consensus 12 ~~~~~C~~~~L~-~lP~~l--~~~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~l~~n~-~~~i~~~~f~~l~~L~~L~l~ 87 (305)
T d1xkua_ 12 LRVVQCSDLGLE-KVPKDL--PPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNK-ISKISPGAFAPLVKLERLYLS 87 (305)
T ss_dssp TTEEECTTSCCC-SCCCSC--CTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSC-CCCBCTTTTTTCTTCCEEECC
T ss_pred CCEEEecCCCCC-ccCCCC--CCCCCEEECcCCcCCCcChhHhhcccccccccccccc-ccccchhhhhCCCccCEeccc
Confidence 444555554444 223322 1345555555555543222344455555555555554 333334444444444444444
Q ss_pred cccCCcccchhhhCCCCCCCCCCccEEEccCccccccCccccCCCCCCCEEEccCCcCCccchhhccCCCCCCEEeCcCC
Q 037325 322 RNNISSEVSDFLDGLSECTNSILLEKLELRFNQFTGILPISLGSLKNLRHLVLWQNSFLGSIPPSIGNLTLLKELYLASN 401 (598)
Q Consensus 322 ~n~l~~~~~~~~~~l~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~ls~n~l~~~~~~~l~~l~~L~~L~l~~n 401 (598)
+|++... |.. ..+.++.|+++.|.+.+..+..+.....+..++...|
T Consensus 88 ~n~l~~l-------------------------------~~~--~~~~l~~L~~~~n~l~~l~~~~~~~~~~~~~l~~~~n 134 (305)
T d1xkua_ 88 KNQLKEL-------------------------------PEK--MPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTN 134 (305)
T ss_dssp SSCCSBC-------------------------------CSS--CCTTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSS
T ss_pred CCccCcC-------------------------------ccc--hhhhhhhhhccccchhhhhhhhhhccccccccccccc
Confidence 4444332 221 1234444444444444333333444444444554444
Q ss_pred cCCcccCCCchhhhcCCCCCCEEEccCccCccccchHHHhcCCCCCEEEccCCcCcccCCCCcccCCCCEEEcccCcCcc
Q 037325 402 QMNGQKISDSYQHLKNQTELRTLVLNKARISDTISDWFWQLSLTLDELDVAYNELRGRVPNSLGFNFPAKVDLSFNNFEG 481 (598)
Q Consensus 402 ~l~~~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~ls~n~~~~~~p~~~~~~~L~~l~ls~n~l~~ 481 (598)
...... .....+..+++|+.+++++|.+... +.. .+++|++|++++|..++..+..+.
T Consensus 135 ~~~~~~--~~~~~~~~l~~L~~l~l~~n~l~~l-~~~---~~~~L~~L~l~~n~~~~~~~~~~~---------------- 192 (305)
T d1xkua_ 135 PLKSSG--IENGAFQGMKKLSYIRIADTNITTI-PQG---LPPSLTELHLDGNKITKVDAASLK---------------- 192 (305)
T ss_dssp CCCGGG--BCTTGGGGCTTCCEEECCSSCCCSC-CSS---CCTTCSEEECTTSCCCEECTGGGT----------------
T ss_pred cccccC--CCccccccccccCccccccCCcccc-Ccc---cCCccCEEECCCCcCCCCChhHhh----------------
Confidence 332211 0012234444455555555444322 111 134555555555555544333222
Q ss_pred cCCCCCcCCcEEEccCCcccccCCchhhcccCCCCCccccCCCCeEeCcCCccccccchhccCCCCCCEEECCCCcCccc
Q 037325 482 RLLLWSFNVTKLYLRDNSFSGLIPNDIGQNLPFLTDLGNLKQLITLVISNNNLSGEIPLLFSNISFLYILDMSNNSLSGS 561 (598)
Q Consensus 482 ~~~~~~~~L~~L~ls~n~l~~~~p~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ls~N~l~~~ 561 (598)
.++.++.|++++|.+++..+..+.. +++|++|+|++|+++ .+|..|.++++|++|+|++|+|+..
T Consensus 193 ----~~~~l~~L~~s~n~l~~~~~~~~~~----------l~~L~~L~L~~N~L~-~lp~~l~~l~~L~~L~Ls~N~i~~i 257 (305)
T d1xkua_ 193 ----GLNNLAKLGLSFNSISAVDNGSLAN----------TPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNISAI 257 (305)
T ss_dssp ----TCTTCCEEECCSSCCCEECTTTGGG----------STTCCEEECCSSCCS-SCCTTTTTCSSCCEEECCSSCCCCC
T ss_pred ----ccccccccccccccccccccccccc----------cccceeeeccccccc-ccccccccccCCCEEECCCCccCcc
Confidence 1345677777777777665655555 788999999999998 7788899999999999999998843
Q ss_pred cchh------ccCCCCCCEEEccCCCCc-ccCCcCc
Q 037325 562 TPES------IGSLRTVKFLVLRNNYLS-GKLPLSL 590 (598)
Q Consensus 562 ~p~~------l~~l~~L~~L~l~~n~l~-g~~P~~~ 590 (598)
-... ...+.+|+.|++++|++. +.+|...
T Consensus 258 ~~~~f~~~~~~~~~~~L~~L~L~~N~~~~~~~~~~~ 293 (305)
T d1xkua_ 258 GSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPST 293 (305)
T ss_dssp CTTSSSCSSCCTTSCCCSEEECCSSSSCGGGSCGGG
T ss_pred ChhhccCcchhcccCCCCEEECCCCcCccCcCCHhH
Confidence 2222 345688999999999985 4555443
|
| >d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Decorin species: Cow (Bos taurus) [TaxId: 9913]
Probab=99.91 E-value=1.2e-22 Score=197.94 Aligned_cols=268 Identities=20% Similarity=0.187 Sum_probs=183.3
Q ss_pred ecCccccCCCCCCEEeCCCCCCCCCCcc-hhccCCCCCCEEECcCCCCCcccchhccCCCCCCEEEccCCCCCCCccChh
Q 037325 104 EISPSLLQLKDLEYLDLSMNNFTGFQVP-EFIGSLKELRYLNLSGSFFSGTIPQTLGNLSNLLYLDLNNFLDQSNQIDLE 182 (598)
Q Consensus 104 ~~~~~l~~l~~L~~L~Ls~n~l~~~~~p-~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~~~~~~~~~~ 182 (598)
.+|..+. +++++|+|++|+++. +| ..|.++++|++|++++|.+....|..|.++++|++|++++|.+...+.
T Consensus 24 ~lP~~l~--~~l~~L~Ls~N~i~~--l~~~~f~~l~~L~~L~l~~n~~~~i~~~~f~~l~~L~~L~l~~n~l~~l~~--- 96 (305)
T d1xkua_ 24 KVPKDLP--PDTALLDLQNNKITE--IKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLKELPE--- 96 (305)
T ss_dssp SCCCSCC--TTCCEEECCSSCCCC--BCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCSBCCS---
T ss_pred ccCCCCC--CCCCEEECcCCcCCC--cChhHhhccccccccccccccccccchhhhhCCCccCEecccCCccCcCcc---
Confidence 3444443 578888888888874 44 467788888888888888886667778888888888888876643322
Q ss_pred hhcCCCCCcEEEcCCCCCCCCcccchHhhhcCCCCCEEEcCCCCCCCC-CCCCCcCCCCCccEEEccCCCCCCCcchhhh
Q 037325 183 WLSGLSSLVYFNLGGADLSKAGAYWLEVFNKLHSFVELHLPNCNLPSL-PLSFPSLNFASLQVLDLSNNDFNSTTPHWLF 261 (598)
Q Consensus 183 ~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~-~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~ 261 (598)
.....++.|++.+|.+.... ...+.....++.++...+..... .....+..+++|+++++++|.++. ++..
T Consensus 97 --~~~~~l~~L~~~~n~l~~l~---~~~~~~~~~~~~l~~~~n~~~~~~~~~~~~~~l~~L~~l~l~~n~l~~-l~~~-- 168 (305)
T d1xkua_ 97 --KMPKTLQELRVHENEITKVR---KSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITT-IPQG-- 168 (305)
T ss_dssp --SCCTTCCEEECCSSCCCBBC---HHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCCS-CCSS--
T ss_pred --chhhhhhhhhccccchhhhh---hhhhhccccccccccccccccccCCCccccccccccCccccccCCccc-cCcc--
Confidence 23456778888888777665 45566677777777777654332 112445567778888888887764 3332
Q ss_pred cCCCCCEEEccCCcccccCCccccCCCCccEEECcCCCcCccccchhhcCCCCCCEEecccccCCcccchhhhCCCCCCC
Q 037325 262 NITSLLCLDLGSNDLQGDIPDGFASLNSLQELDLSGNSFLGGQLSRNLGKLCNLRTMILSRNNISSEVSDFLDGLSECTN 341 (598)
Q Consensus 262 ~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~~~~ 341 (598)
.+++|+.|++++|...+..+..+..++.++.|++++|. +....+..+..+++|++|++++|+++.. |..+..++
T Consensus 169 ~~~~L~~L~l~~n~~~~~~~~~~~~~~~l~~L~~s~n~-l~~~~~~~~~~l~~L~~L~L~~N~L~~l-p~~l~~l~---- 242 (305)
T d1xkua_ 169 LPPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNS-ISAVDNGSLANTPHLRELHLNNNKLVKV-PGGLADHK---- 242 (305)
T ss_dssp CCTTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSC-CCEECTTTGGGSTTCCEEECCSSCCSSC-CTTTTTCS----
T ss_pred cCCccCEEECCCCcCCCCChhHhhcccccccccccccc-ccccccccccccccceeeeccccccccc-cccccccc----
Confidence 25678888888888777777777788888888888887 5555667777888888888888887754 44566666
Q ss_pred CCCccEEEccCccccccCccc------cCCCCCCCEEEccCCcCC--ccchhhccCCCCCC
Q 037325 342 SILLEKLELRFNQFTGILPIS------LGSLKNLRHLVLWQNSFL--GSIPPSIGNLTLLK 394 (598)
Q Consensus 342 ~~~L~~L~Ls~n~l~~~~~~~------l~~l~~L~~L~ls~n~l~--~~~~~~l~~l~~L~ 394 (598)
+|++|++++|+++...... .....+|+.|++++|++. ...|..|..+....
T Consensus 243 --~L~~L~Ls~N~i~~i~~~~f~~~~~~~~~~~L~~L~L~~N~~~~~~~~~~~f~~~~~~~ 301 (305)
T d1xkua_ 243 --YIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRA 301 (305)
T ss_dssp --SCCEEECCSSCCCCCCTTSSSCSSCCTTSCCCSEEECCSSSSCGGGSCGGGGTTCCCGG
T ss_pred --CCCEEECCCCccCccChhhccCcchhcccCCCCEEECCCCcCccCcCCHhHhcccccCc
Confidence 7888888888877532222 345677888889888775 23344444444333
|
| >d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.89 E-value=6.3e-23 Score=197.62 Aligned_cols=208 Identities=24% Similarity=0.212 Sum_probs=130.1
Q ss_pred CCccEEEccCCCCCCCcchhhhcCCCCCEEEccCCcccccCCccccCCCCccEEECcCCCcCccccchhhcCCCCCCEEe
Q 037325 240 ASLQVLDLSNNDFNSTTPHWLFNITSLLCLDLGSNDLQGDIPDGFASLNSLQELDLSGNSFLGGQLSRNLGKLCNLRTMI 319 (598)
Q Consensus 240 ~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~l~~l~~L~~L~ 319 (598)
+++++|+|++|+++...+..+.++++|++|++++|.+....+..+..+..++.+....+.......+..+.++++|++|+
T Consensus 32 ~~~~~L~Ls~N~i~~i~~~~f~~l~~L~~L~ls~n~l~~i~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~l~~L~~L~ 111 (284)
T d1ozna_ 32 AASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLH 111 (284)
T ss_dssp TTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEEE
T ss_pred CCCCEEECcCCcCCCCCHHHhhccccccccccccccccccccccccccccccccccccccccccccchhhcccccCCEEe
Confidence 45666666666666555555666666777777666666555555556666666665544324444455666666777777
Q ss_pred cccccCCcccchhhhCCCCCCCCCCccEEEccCccccccCccccCCCCCCCEEEccCCcCCccchhhccCCCCCCEEeCc
Q 037325 320 LSRNNISSEVSDFLDGLSECTNSILLEKLELRFNQFTGILPISLGSLKNLRHLVLWQNSFLGSIPPSIGNLTLLKELYLA 399 (598)
Q Consensus 320 l~~n~l~~~~~~~~~~l~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~ls~n~l~~~~~~~l~~l~~L~~L~l~ 399 (598)
+++|.+....+..+.... +|+.+++++|.+++..+..+..+++|+.|++++|++.+..+..+..+++|++++++
T Consensus 112 l~~n~~~~~~~~~~~~~~------~L~~l~l~~N~l~~i~~~~f~~~~~L~~L~l~~N~l~~l~~~~f~~l~~L~~l~l~ 185 (284)
T d1ozna_ 112 LDRCGLQELGPGLFRGLA------ALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLH 185 (284)
T ss_dssp CTTSCCCCCCTTTTTTCT------TCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECC
T ss_pred cCCcccccccccccchhc------ccchhhhccccccccChhHhccccchhhcccccCcccccchhhhccccccchhhhh
Confidence 776666555554454444 56677777777665555566666667777777776665555666666777777777
Q ss_pred CCcCCcccCCCchhhhcCCCCCCEEEccCccCccccchHHHhcCCCCCEEEccCCcCcc
Q 037325 400 SNQMNGQKISDSYQHLKNQTELRTLVLNKARISDTISDWFWQLSLTLDELDVAYNELRG 458 (598)
Q Consensus 400 ~n~l~~~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~ls~n~~~~ 458 (598)
+|++++.. +. .+..+++|+.|++++|++.+..+..+.. +++|+++++++|++.+
T Consensus 186 ~N~l~~i~-~~---~f~~l~~L~~L~l~~N~i~~~~~~~~~~-~~~L~~L~l~~N~l~C 239 (284)
T d1ozna_ 186 QNRVAHVH-PH---AFRDLGRLMTLYLFANNLSALPTEALAP-LRALQYLRLNDNPWVC 239 (284)
T ss_dssp SSCCCEEC-TT---TTTTCTTCCEEECCSSCCSCCCHHHHTT-CTTCCEEECCSSCEEC
T ss_pred hccccccC-hh---Hhhhhhhccccccccccccccccccccc-ccccCEEEecCCCCCC
Confidence 77666544 32 2455666667777777766655555544 5666777776666654
|
| >d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.89 E-value=1.3e-22 Score=195.41 Aligned_cols=214 Identities=22% Similarity=0.215 Sum_probs=126.2
Q ss_pred ecCccccCCCCCCEEeCCCCCCCCCCcchhccCCCCCCEEECcCCCCCcccchhccCCCCCCEEEccCCCCCCCccChhh
Q 037325 104 EISPSLLQLKDLEYLDLSMNNFTGFQVPEFIGSLKELRYLNLSGSFFSGTIPQTLGNLSNLLYLDLNNFLDQSNQIDLEW 183 (598)
Q Consensus 104 ~~~~~l~~l~~L~~L~Ls~n~l~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~~~~~~~~~~~ 183 (598)
.+|..+. +.+++|+|++|+++.. .+..|.++++|++|++++|.+.+..+..+..+..+++++...+.. ........
T Consensus 25 ~iP~~ip--~~~~~L~Ls~N~i~~i-~~~~f~~l~~L~~L~ls~n~l~~i~~~~~~~~~~~~~l~~~~~~~-~~~l~~~~ 100 (284)
T d1ozna_ 25 AVPVGIP--AASQRIFLHGNRISHV-PAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQ-LRSVDPAT 100 (284)
T ss_dssp SCCTTCC--TTCSEEECTTSCCCEE-CTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTT-CCCCCTTT
T ss_pred ccCCCCC--CCCCEEECcCCcCCCC-CHHHhhccccccccccccccccccccccccccccccccccccccc-cccccchh
Confidence 4454443 5789999999999853 345688999999999999999877777777888888887754322 11222334
Q ss_pred hcCCCCCcEEEcCCCCCCCCcccchHhhhcCCCCCEEEcCCCCCCCCCCCCCcCCCCCccEEEccCCCCCCCcchhhhcC
Q 037325 184 LSGLSSLVYFNLGGADLSKAGAYWLEVFNKLHSFVELHLPNCNLPSLPLSFPSLNFASLQVLDLSNNDFNSTTPHWLFNI 263 (598)
Q Consensus 184 ~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l 263 (598)
+.++++|++|++++|.+.... ...+...++|+.+++++|.++.++. ..+..+++|+.|++++|++++..+..+.++
T Consensus 101 ~~~l~~L~~L~l~~n~~~~~~---~~~~~~~~~L~~l~l~~N~l~~i~~-~~f~~~~~L~~L~l~~N~l~~l~~~~f~~l 176 (284)
T d1ozna_ 101 FHGLGRLHTLHLDRCGLQELG---PGLFRGLAALQYLYLQDNALQALPD-DTFRDLGNLTHLFLHGNRISSVPERAFRGL 176 (284)
T ss_dssp TTTCTTCCEEECTTSCCCCCC---TTTTTTCTTCCEEECCSSCCCCCCT-TTTTTCTTCCEEECCSSCCCEECTTTTTTC
T ss_pred hcccccCCEEecCCccccccc---ccccchhcccchhhhccccccccCh-hHhccccchhhcccccCcccccchhhhccc
Confidence 566666666666666655443 3344445555555555555555443 334444555555555555554444445555
Q ss_pred CCCCEEEccCCcccccCCccccCCCCccEEECcCCCcCccccchhhcCCCCCCEEecccccCC
Q 037325 264 TSLLCLDLGSNDLQGDIPDGFASLNSLQELDLSGNSFLGGQLSRNLGKLCNLRTMILSRNNIS 326 (598)
Q Consensus 264 ~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~l~~l~~L~~L~l~~n~l~ 326 (598)
++|+.+++++|++++..|..|..+++|++|++++|. +....+..++.+++|++|++++|.+.
T Consensus 177 ~~L~~l~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~-i~~~~~~~~~~~~~L~~L~l~~N~l~ 238 (284)
T d1ozna_ 177 HSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANN-LSALPTEALAPLRALQYLRLNDNPWV 238 (284)
T ss_dssp TTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSC-CSCCCHHHHTTCTTCCEEECCSSCEE
T ss_pred cccchhhhhhccccccChhHhhhhhhcccccccccc-cccccccccccccccCEEEecCCCCC
Confidence 555555555555554445555555555555555555 33444444555555555555555443
|
| >d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: von Willebrand factor binding domain of glycoprotein Ib alpha species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.85 E-value=1.4e-20 Score=178.87 Aligned_cols=198 Identities=23% Similarity=0.191 Sum_probs=106.6
Q ss_pred CccEEEccCccccccCccccCCCCCCCEEEccCCcCCccchhhccCCCCCCEEeCcCCcCCcccCCCchhhhcCCCCCCE
Q 037325 344 LLEKLELRFNQFTGILPISLGSLKNLRHLVLWQNSFLGSIPPSIGNLTLLKELYLASNQMNGQKISDSYQHLKNQTELRT 423 (598)
Q Consensus 344 ~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~ls~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~~~~L~~ 423 (598)
.+.+++.+++.++ .+|..+. +++++|++++|++++..+..|..+++|++|++++|+++... .+..+++|++
T Consensus 11 ~~~~v~C~~~~L~-~iP~~lp--~~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~L~~N~l~~l~------~~~~l~~L~~ 81 (266)
T d1p9ag_ 11 SHLEVNCDKRNLT-ALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQ------VDGTLPVLGT 81 (266)
T ss_dssp TCCEEECTTSCCS-SCCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEE------CCSCCTTCCE
T ss_pred CCeEEEccCCCCC-eeCcCcC--cCCCEEECcCCcCCCcCHHHhhccccccccccccccccccc------cccccccccc
Confidence 3444555555555 2443332 35566666666665444445556666666666666555322 1234555556
Q ss_pred EEccCccCccccchHHHhcCCCCCEEEccCCcCcccCCCCcccCCCCEEEcccCcCcccCCCCCcCCcEEEccCCccccc
Q 037325 424 LVLNKARISDTISDWFWQLSLTLDELDVAYNELRGRVPNSLGFNFPAKVDLSFNNFEGRLLLWSFNVTKLYLRDNSFSGL 503 (598)
Q Consensus 424 L~l~~n~l~~~~~~~~~~~~~~L~~L~ls~n~~~~~~p~~~~~~~L~~l~ls~n~l~~~~~~~~~~L~~L~ls~n~l~~~ 503 (598)
|++++|++++..+ .+.. ++.|++|++++|.+.+..+..+. .+.++++|++++|.++..
T Consensus 82 L~Ls~N~l~~~~~-~~~~-l~~L~~L~l~~~~~~~~~~~~~~--------------------~l~~l~~L~l~~n~l~~l 139 (266)
T d1p9ag_ 82 LDLSHNQLQSLPL-LGQT-LPALTVLDVSFNRLTSLPLGALR--------------------GLGELQELYLKGNELKTL 139 (266)
T ss_dssp EECCSSCCSSCCC-CTTT-CTTCCEEECCSSCCCCCCSSTTT--------------------TCTTCCEEECTTSCCCCC
T ss_pred ccccccccccccc-cccc-ccccccccccccccceeeccccc--------------------ccccccccccccccccee
Confidence 6666555543322 2222 45566666666655533322222 234455555555555533
Q ss_pred CCchhhcccCCCCCccccCCCCeEeCcCCccccccchhccCCCCCCEEECCCCcCccccchhccCCCCCCEEEccCCCCc
Q 037325 504 IPNDIGQNLPFLTDLGNLKQLITLVISNNNLSGEIPLLFSNISFLYILDMSNNSLSGSTPESIGSLRTVKFLVLRNNYLS 583 (598)
Q Consensus 504 ~p~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~l~~l~~L~~L~l~~n~l~ 583 (598)
.+..+.. ++.++.+++++|++++..+..|..+++|++|+|++|+++ .+|.++..+++|+.|+|++|++.
T Consensus 140 ~~~~~~~----------l~~l~~l~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~L~-~lp~~~~~~~~L~~L~L~~Np~~ 208 (266)
T d1p9ag_ 140 PPGLLTP----------TPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGNPWL 208 (266)
T ss_dssp CTTTTTT----------CTTCCEEECTTSCCSCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCCCSEEECCSCCBC
T ss_pred ccccccc----------cccchhcccccccccccCccccccccccceeecccCCCc-ccChhHCCCCCCCEEEecCCCCC
Confidence 2322222 566666666666666555556666666666666666666 56666666666666666666653
|
| >d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: von Willebrand factor binding domain of glycoprotein Ib alpha species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.85 E-value=3.1e-20 Score=176.53 Aligned_cols=187 Identities=28% Similarity=0.273 Sum_probs=92.8
Q ss_pred CCcceecCccccCCCCCCEEeCCCCCCCCCCcchhccCCCCCCEEECcCCCCCcccchhccCCCCCCEEEccCCCCCCCc
Q 037325 99 HELGGEISPSLLQLKDLEYLDLSMNNFTGFQVPEFIGSLKELRYLNLSGSFFSGTIPQTLGNLSNLLYLDLNNFLDQSNQ 178 (598)
Q Consensus 99 ~~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~~~~~~ 178 (598)
++++. +|+.+. +++++|+|++|++++. .+..|.++++|++|+|++|+++ .+|. ++.+++|++|++++|.+....
T Consensus 20 ~~L~~-iP~~lp--~~l~~L~Ls~N~i~~l-~~~~f~~l~~L~~L~L~~N~l~-~l~~-~~~l~~L~~L~Ls~N~l~~~~ 93 (266)
T d1p9ag_ 20 RNLTA-LPPDLP--KDTTILHLSENLLYTF-SLATLMPYTRLTQLNLDRAELT-KLQV-DGTLPVLGTLDLSHNQLQSLP 93 (266)
T ss_dssp SCCSS-CCSCCC--TTCCEEECTTSCCSEE-EGGGGTTCTTCCEEECTTSCCC-EEEC-CSCCTTCCEEECCSSCCSSCC
T ss_pred CCCCe-eCcCcC--cCCCEEECcCCcCCCc-CHHHhhcccccccccccccccc-cccc-ccccccccccccccccccccc
Confidence 45553 454443 4667777777776643 3345666777777777777666 4443 455666666666665543322
Q ss_pred cChhhhcCCCCCcEEEcCCCCCCCCcccchHhhhcCCCCCEEEcCCCCCCCCCCCCCcCCCCCccEEEccCCCCCCCcch
Q 037325 179 IDLEWLSGLSSLVYFNLGGADLSKAGAYWLEVFNKLHSFVELHLPNCNLPSLPLSFPSLNFASLQVLDLSNNDFNSTTPH 258 (598)
Q Consensus 179 ~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~ 258 (598)
. .+.++++|++|+++++.+.... ...+..+.++++|++++|.++.++. ..+..+++++++++++|++++..+.
T Consensus 94 ~---~~~~l~~L~~L~l~~~~~~~~~---~~~~~~l~~l~~L~l~~n~l~~l~~-~~~~~l~~l~~l~l~~N~l~~~~~~ 166 (266)
T d1p9ag_ 94 L---LGQTLPALTVLDVSFNRLTSLP---LGALRGLGELQELYLKGNELKTLPP-GLLTPTPKLEKLSLANNNLTELPAG 166 (266)
T ss_dssp C---CTTTCTTCCEEECCSSCCCCCC---SSTTTTCTTCCEEECTTSCCCCCCT-TTTTTCTTCCEEECTTSCCSCCCTT
T ss_pred c---ccccccccccccccccccceee---ccccccccccccccccccccceecc-ccccccccchhcccccccccccCcc
Confidence 1 2444455555555555544433 2333444444444444444444433 3333344444444444444444444
Q ss_pred hhhcCCCCCEEEccCCcccccCCccccCCCCccEEECcCCC
Q 037325 259 WLFNITSLLCLDLGSNDLQGDIPDGFASLNSLQELDLSGNS 299 (598)
Q Consensus 259 ~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~ 299 (598)
.+..+++|++|++++|+++ .+|+.+..+++|+.|++++|+
T Consensus 167 ~~~~l~~L~~L~Ls~N~L~-~lp~~~~~~~~L~~L~L~~Np 206 (266)
T d1p9ag_ 167 LLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGNP 206 (266)
T ss_dssp TTTTCTTCCEEECCSSCCC-CCCTTTTTTCCCSEEECCSCC
T ss_pred ccccccccceeecccCCCc-ccChhHCCCCCCCEEEecCCC
Confidence 4444444444444444444 344444444444444444444
|
| >d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Leucine rich effector protein YopM domain: Leucine rich effector protein YopM species: Yersinia pestis [TaxId: 632]
Probab=99.84 E-value=3.7e-18 Score=169.31 Aligned_cols=311 Identities=26% Similarity=0.216 Sum_probs=164.6
Q ss_pred CCCEEEcCCCCCCCCCCCCCcCCCCCccEEEccCCCCCCCcchhhhcCCCCCEEEccCCcccccCCccccCCCCccEEEC
Q 037325 216 SFVELHLPNCNLPSLPLSFPSLNFASLQVLDLSNNDFNSTTPHWLFNITSLLCLDLGSNDLQGDIPDGFASLNSLQELDL 295 (598)
Q Consensus 216 ~L~~L~l~~~~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l 295 (598)
++++|+++++.++.+|. ..++|++|++++|+++ .+|.. ..+|+.|++.+|.++ .+++ + .+.|++|++
T Consensus 39 ~l~~LdLs~~~L~~lp~-----~~~~L~~L~Ls~N~l~-~lp~~---~~~L~~L~l~~n~l~-~l~~-l--p~~L~~L~L 105 (353)
T d1jl5a_ 39 QAHELELNNLGLSSLPE-----LPPHLESLVASCNSLT-ELPEL---PQSLKSLLVDNNNLK-ALSD-L--PPLLEYLGV 105 (353)
T ss_dssp TCSEEECTTSCCSCCCS-----CCTTCSEEECCSSCCS-SCCCC---CTTCCEEECCSSCCS-CCCS-C--CTTCCEEEC
T ss_pred CCCEEEeCCCCCCCCCC-----CCCCCCEEECCCCCCc-ccccc---hhhhhhhhhhhcccc-hhhh-h--ccccccccc
Confidence 45555555555555442 1245666666666655 33432 235566666666554 2221 1 134666666
Q ss_pred cCCCcCccccchhhcCCCCCCEEecccccCCcccchhhhCCCCCCCCCCccEEEccCccccccCccccCCCCCCCEEEcc
Q 037325 296 SGNSFLGGQLSRNLGKLCNLRTMILSRNNISSEVSDFLDGLSECTNSILLEKLELRFNQFTGILPISLGSLKNLRHLVLW 375 (598)
Q Consensus 296 ~~n~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~ls 375 (598)
++|.+ . .+|. ++.+++|+.|+++++.+...... .. .+..+.+.++... ....+..++.++.++++
T Consensus 106 ~~n~l-~-~lp~-~~~l~~L~~L~l~~~~~~~~~~~----~~------~l~~l~~~~~~~~--~~~~l~~l~~l~~L~l~ 170 (353)
T d1jl5a_ 106 SNNQL-E-KLPE-LQNSSFLKIIDVDNNSLKKLPDL----PP------SLEFIAAGNNQLE--ELPELQNLPFLTAIYAD 170 (353)
T ss_dssp CSSCC-S-SCCC-CTTCTTCCEEECCSSCCSCCCCC----CT------TCCEEECCSSCCS--SCCCCTTCTTCCEEECC
T ss_pred ccccc-c-cccc-hhhhccceeeccccccccccccc----cc------cccchhhcccccc--ccccccccccceecccc
Confidence 66653 2 2332 34566666666666655432211 11 4555555554433 22344556666666666
Q ss_pred CCcCCccchhhccCCCCCCEEeCcCCcCCcccCCCchhhhcCCCCCCEEEccCccCccccchHHHhcCCCCCEEEccCCc
Q 037325 376 QNSFLGSIPPSIGNLTLLKELYLASNQMNGQKISDSYQHLKNQTELRTLVLNKARISDTISDWFWQLSLTLDELDVAYNE 455 (598)
Q Consensus 376 ~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~ls~n~ 455 (598)
+|..... +. .....+.+...++.+... + ....++.|+.+++++|..... +. ....+..+.+.++.
T Consensus 171 ~n~~~~~-~~---~~~~~~~l~~~~~~~~~~--~----~~~~l~~L~~l~l~~n~~~~~-~~----~~~~l~~~~~~~~~ 235 (353)
T d1jl5a_ 171 NNSLKKL-PD---LPLSLESIVAGNNILEEL--P----ELQNLPFLTTIYADNNLLKTL-PD----LPPSLEALNVRDNY 235 (353)
T ss_dssp SSCCSSC-CC---CCTTCCEEECCSSCCSSC--C----CCTTCTTCCEEECCSSCCSSC-CS----CCTTCCEEECCSSC
T ss_pred ccccccc-cc---cccccccccccccccccc--c----ccccccccccccccccccccc-cc----cccccccccccccc
Confidence 6655422 11 112234444444433321 1 134556666666666655432 21 13456666666666
Q ss_pred CcccCCCCcccCCCCEEEcccCcCcccCCCCCcCCcEEEccCCcccccCCchhhcccCCCCCccccCCCCeEeCcCCccc
Q 037325 456 LRGRVPNSLGFNFPAKVDLSFNNFEGRLLLWSFNVTKLYLRDNSFSGLIPNDIGQNLPFLTDLGNLKQLITLVISNNNLS 535 (598)
Q Consensus 456 ~~~~~p~~~~~~~L~~l~ls~n~l~~~~~~~~~~L~~L~ls~n~l~~~~p~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~ 535 (598)
+.... ... ..+...++..+.+.+ +..........++..+.+.+. +. .+++|++|+|++|+++
T Consensus 236 ~~~~~-~~~--~~l~~~~~~~~~~~~-l~~l~~~~~~~~~~~~~~~~~-~~-------------~~~~L~~L~Ls~N~l~ 297 (353)
T d1jl5a_ 236 LTDLP-ELP--QSLTFLDVSENIFSG-LSELPPNLYYLNASSNEIRSL-CD-------------LPPSLEELNVSNNKLI 297 (353)
T ss_dssp CSCCC-CCC--TTCCEEECCSSCCSE-ESCCCTTCCEEECCSSCCSEE-CC-------------CCTTCCEEECCSSCCS
T ss_pred ccccc-ccc--ccccccccccccccc-cccccchhcccccccCccccc-cc-------------cCCCCCEEECCCCccC
Confidence 54321 111 134444554444432 122223445566666666532 11 1567888888888887
Q ss_pred cccchhccCCCCCCEEECCCCcCccccchhccCCCCCCEEEccCCCCcccCCcCccCcCCC
Q 037325 536 GEIPLLFSNISFLYILDMSNNSLSGSTPESIGSLRTVKFLVLRNNYLSGKLPLSLKNCTFQ 596 (598)
Q Consensus 536 ~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~l~~l~~L~~L~l~~n~l~g~~P~~~~~~~~L 596 (598)
.+|.. +++|+.|++++|+++ .+|.. +++|++|++++|+++ .+|+....+..|
T Consensus 298 -~lp~~---~~~L~~L~L~~N~L~-~l~~~---~~~L~~L~L~~N~L~-~lp~~~~~L~~L 349 (353)
T d1jl5a_ 298 -ELPAL---PPRLERLIASFNHLA-EVPEL---PQNLKQLHVEYNPLR-EFPDIPESVEDL 349 (353)
T ss_dssp -CCCCC---CTTCCEEECCSSCCS-CCCCC---CTTCCEEECCSSCCS-SCCCCCTTCCEE
T ss_pred -ccccc---cCCCCEEECCCCcCC-ccccc---cCCCCEEECcCCcCC-CCCccccccCee
Confidence 67754 567888888888887 57753 457888888888887 677665555544
|
| >d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Leucine rich effector protein YopM domain: Leucine rich effector protein YopM species: Yersinia pestis [TaxId: 632]
Probab=99.83 E-value=5.1e-18 Score=168.34 Aligned_cols=72 Identities=25% Similarity=0.272 Sum_probs=53.2
Q ss_pred CCCcCCcEEEccCCcccccCCchhhcccCCCCCccccCCCCeEeCcCCccccccchhccCCCCCCEEECCCCcCccccch
Q 037325 485 LWSFNVTKLYLRDNSFSGLIPNDIGQNLPFLTDLGNLKQLITLVISNNNLSGEIPLLFSNISFLYILDMSNNSLSGSTPE 564 (598)
Q Consensus 485 ~~~~~L~~L~ls~n~l~~~~p~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~ 564 (598)
..+++|++|++++|+++ .+|.. +++|+.|+|++|+|+ .+|.. +++|++|++++|+++ .+|.
T Consensus 281 ~~~~~L~~L~Ls~N~l~-~lp~~-------------~~~L~~L~L~~N~L~-~l~~~---~~~L~~L~L~~N~L~-~lp~ 341 (353)
T d1jl5a_ 281 DLPPSLEELNVSNNKLI-ELPAL-------------PPRLERLIASFNHLA-EVPEL---PQNLKQLHVEYNPLR-EFPD 341 (353)
T ss_dssp CCCTTCCEEECCSSCCS-CCCCC-------------CTTCCEEECCSSCCS-CCCCC---CTTCCEEECCSSCCS-SCCC
T ss_pred ccCCCCCEEECCCCccC-ccccc-------------cCCCCEEECCCCcCC-ccccc---cCCCCEEECcCCcCC-CCCc
Confidence 34568888888888887 56643 567889999999988 67753 467899999999987 6775
Q ss_pred hccCCCCCCEEEcc
Q 037325 565 SIGSLRTVKFLVLR 578 (598)
Q Consensus 565 ~l~~l~~L~~L~l~ 578 (598)
.. .+|+.|.+.
T Consensus 342 ~~---~~L~~L~~~ 352 (353)
T d1jl5a_ 342 IP---ESVEDLRMN 352 (353)
T ss_dssp CC---TTCCEEECC
T ss_pred cc---cccCeeECc
Confidence 32 356666653
|
| >d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: 28-residue LRR domain: Ribonuclease inhibitor species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.83 E-value=9.5e-23 Score=210.69 Aligned_cols=203 Identities=19% Similarity=0.178 Sum_probs=104.6
Q ss_pred CCCCCCEEEccCCcCCcc-----chhhccCCCCCCEEeCcCCcCCcccCCCchhhhcCCCCCCEEEccCccCccccchHH
Q 037325 365 SLKNLRHLVLWQNSFLGS-----IPPSIGNLTLLKELYLASNQMNGQKISDSYQHLKNQTELRTLVLNKARISDTISDWF 439 (598)
Q Consensus 365 ~l~~L~~L~ls~n~l~~~-----~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~ 439 (598)
..+.++.+++++|++... ..........++.+++++|.+...........+...+.++.+++++|.+++.....+
T Consensus 224 ~~~~~~~l~~~~n~~~~~~~~~~~~~~~~~~~~l~~l~l~~n~i~~~~~~~~~~~l~~~~~l~~l~l~~n~i~~~~~~~l 303 (460)
T d1z7xw1 224 SKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLL 303 (460)
T ss_dssp HCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHH
T ss_pred ccccccccchhhccccccccchhhcccccccccccccccccccccccccccccccccccccccccccccccccccccchh
Confidence 445566666666654321 122233455666666666666543322223344556666666666666654433332
Q ss_pred Hh----cCCCCCEEEccCCcCcccCCCCcccCCCCEEEcccCcCcccCCCCCcCCcEEEccCCcccccCCchhhcccCCC
Q 037325 440 WQ----LSLTLDELDVAYNELRGRVPNSLGFNFPAKVDLSFNNFEGRLLLWSFNVTKLYLRDNSFSGLIPNDIGQNLPFL 515 (598)
Q Consensus 440 ~~----~~~~L~~L~ls~n~~~~~~p~~~~~~~L~~l~ls~n~l~~~~~~~~~~L~~L~ls~n~l~~~~p~~~~~~~~~~ 515 (598)
.. ....|+.+++++|.++......+. ......++|++|||++|++++.....+..
T Consensus 304 ~~~l~~~~~~L~~l~l~~~~l~~~~~~~l~----------------~~~~~~~~L~~L~Ls~N~i~~~g~~~l~~----- 362 (460)
T d1z7xw1 304 CETLLEPGCQLESLWVKSCSFTAACCSHFS----------------SVLAQNRFLLELQISNNRLEDAGVRELCQ----- 362 (460)
T ss_dssp HHHHTSTTCCCCEEECTTSCCBGGGHHHHH----------------HHHHHCSSCCEEECCSSBCHHHHHHHHHH-----
T ss_pred hccccccccccccccccccchhhhhhhhcc----------------cccccccchhhhheeeecccCcccchhhh-----
Confidence 21 123455555555554422111110 00111245667777777665432222211
Q ss_pred CCc-cccCCCCeEeCcCCccccc----cchhccCCCCCCEEECCCCcCccccchhc----c-CCCCCCEEEccCCCCccc
Q 037325 516 TDL-GNLKQLITLVISNNNLSGE----IPLLFSNISFLYILDMSNNSLSGSTPESI----G-SLRTVKFLVLRNNYLSGK 585 (598)
Q Consensus 516 ~~~-~~l~~L~~L~Ls~N~l~~~----~p~~~~~l~~L~~L~ls~N~l~~~~p~~l----~-~l~~L~~L~l~~n~l~g~ 585 (598)
.+ ...+.|++|+|++|.|++. ++..+..+++|++|||++|+++......+ . +.+.|+.|++.+|.+...
T Consensus 363 -~l~~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~N~i~~~g~~~l~~~l~~~~~~L~~l~l~~~~~~~~ 441 (460)
T d1z7xw1 363 -GLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGCLLEQLVLYDIYWSEE 441 (460)
T ss_dssp -HHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCCCCCEEECCSSSCCHHHHHHHHHHHTSTTCCCCEEECTTCCCCHH
T ss_pred -hhhcccCCCCEEECCCCCCChHHHHHHHHHHhcCCCCCEEECCCCcCCHHHHHHHHHHHHhCCCccCEEECCCCCCCHH
Confidence 00 1135577777777777642 44555666777777777777765433333 2 334677777777777654
Q ss_pred CCcC
Q 037325 586 LPLS 589 (598)
Q Consensus 586 ~P~~ 589 (598)
.++.
T Consensus 442 ~~~~ 445 (460)
T d1z7xw1 442 MEDR 445 (460)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 4443
|
| >d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: 28-residue LRR domain: Ribonuclease inhibitor species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.77 E-value=1.8e-20 Score=193.28 Aligned_cols=359 Identities=22% Similarity=0.249 Sum_probs=177.6
Q ss_pred CCcEEEcCCCCCCCCcccchHhhhcCCCCCEEEcCCCCCCCCCC---CCCcCCCCCccEEEccCCCCCCCcchhhh----
Q 037325 189 SLVYFNLGGADLSKAGAYWLEVFNKLHSFVELHLPNCNLPSLPL---SFPSLNFASLQVLDLSNNDFNSTTPHWLF---- 261 (598)
Q Consensus 189 ~L~~L~l~~n~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~---~~~~~~l~~L~~L~L~~n~l~~~~~~~l~---- 261 (598)
+|+.|+++++++++.. |.+.+..+++++.|++++|.++.... ...+..+++|++|++++|+++......+.
T Consensus 3 ~l~~ld~~~~~i~~~~--~~~l~~~l~~l~~L~L~~~~i~~~~~~~l~~~L~~~~~L~~LdLs~N~i~~~~~~~l~~~l~ 80 (460)
T d1z7xw1 3 DIQSLDIQCEELSDAR--WAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQ 80 (460)
T ss_dssp EEEEEEEESCCCCHHH--HHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTC
T ss_pred CCCEEEeeCCcCChHH--HHHHHHhCCCCCEEEeCCCCCCHHHHHHHHHHHhcCCCCCEEECcCCcCChHHHHHHHHHHh
Confidence 5788888888888743 24556667777777777776654211 01234556666666666665432212221
Q ss_pred -cCCCCCEEEccCCccccc----CCccccCCCCccEEECcCCCcCccccchhh----c-CCCCCCEEecccccCCcccch
Q 037325 262 -NITSLLCLDLGSNDLQGD----IPDGFASLNSLQELDLSGNSFLGGQLSRNL----G-KLCNLRTMILSRNNISSEVSD 331 (598)
Q Consensus 262 -~l~~L~~L~l~~n~l~~~----~~~~l~~l~~L~~L~l~~n~~~~~~~~~~l----~-~l~~L~~L~l~~n~l~~~~~~ 331 (598)
..++|++|++++|++++. ++..+..+++|++|++++|. ++......+ . .....................
T Consensus 81 ~~~~~L~~L~L~~n~it~~~~~~l~~~l~~~~~L~~L~L~~N~-i~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~ 159 (460)
T d1z7xw1 81 TPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNL-LGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCE 159 (460)
T ss_dssp STTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSB-CHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHH
T ss_pred cCCCCCCEEECCCCCccccccccccchhhcccccccccccccc-chhhhhhhhhhcccccccccccccccccccchhhhc
Confidence 123566666666655432 22334455556666666655 222111111 0 111122222222222111110
Q ss_pred ----hhhCCCCCCCCCCccEEEccCccccccC----cccc-CCCCCCCEEEccCCcCCcc----chhhccCCCCCCEEeC
Q 037325 332 ----FLDGLSECTNSILLEKLELRFNQFTGIL----PISL-GSLKNLRHLVLWQNSFLGS----IPPSIGNLTLLKELYL 398 (598)
Q Consensus 332 ----~~~~l~~~~~~~~L~~L~Ls~n~l~~~~----~~~l-~~l~~L~~L~ls~n~l~~~----~~~~l~~l~~L~~L~l 398 (598)
.+.... .++.++++++...... ...+ ........+++..+.+... ....+...+.++.+++
T Consensus 160 ~~~~~l~~~~------~~~~~~ls~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~ 233 (460)
T d1z7xw1 160 PLASVLRAKP------DFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELAL 233 (460)
T ss_dssp HHHHHHHHCT------TCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEEC
T ss_pred cccccccccc------ccccccccccccccccccccccccccccccccccccccccccchhhhcccccccccccccccch
Confidence 011111 3444444444332110 0000 1112233444444433211 1112233344445555
Q ss_pred cCCcCCcccCCCch-hhhcCCCCCCEEEccCccCccccchHHH---hcCCCCCEEEccCCcCcccCCCCcccCCCCEEEc
Q 037325 399 ASNQMNGQKISDSY-QHLKNQTELRTLVLNKARISDTISDWFW---QLSLTLDELDVAYNELRGRVPNSLGFNFPAKVDL 474 (598)
Q Consensus 399 ~~n~l~~~~~~~~~-~~l~~~~~L~~L~l~~n~l~~~~~~~~~---~~~~~L~~L~ls~n~~~~~~p~~~~~~~L~~l~l 474 (598)
.+|.+........+ ........++.+++++|.+.......+. ...+. +..+++
T Consensus 234 ~~n~~~~~~~~~~~~~~~~~~~~l~~l~l~~n~i~~~~~~~~~~~l~~~~~-----------------------l~~l~l 290 (460)
T d1z7xw1 234 GSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKES-----------------------LKELSL 290 (460)
T ss_dssp CSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTT-----------------------CCEEEC
T ss_pred hhccccccccchhhccccccccccccccccccccccccccccccccccccc-----------------------cccccc
Confidence 44443221100000 1122233444444444444322211110 11334 444555
Q ss_pred ccCcCcc--------cCCCCCcCCcEEEccCCcccccCCchhhcccCCCCCccccCCCCeEeCcCCccccc----cchhc
Q 037325 475 SFNNFEG--------RLLLWSFNVTKLYLRDNSFSGLIPNDIGQNLPFLTDLGNLKQLITLVISNNNLSGE----IPLLF 542 (598)
Q Consensus 475 s~n~l~~--------~~~~~~~~L~~L~ls~n~l~~~~p~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~----~p~~~ 542 (598)
++|.+.+ .+......|+.+++++|.+++.....+... ....++|+.|+|++|.+++. ++..+
T Consensus 291 ~~n~i~~~~~~~l~~~l~~~~~~L~~l~l~~~~l~~~~~~~l~~~------~~~~~~L~~L~Ls~N~i~~~g~~~l~~~l 364 (460)
T d1z7xw1 291 AGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSV------LAQNRFLLELQISNNRLEDAGVRELCQGL 364 (460)
T ss_dssp TTCCCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHH------HHHCSSCCEEECCSSBCHHHHHHHHHHHH
T ss_pred ccccccccccchhhccccccccccccccccccchhhhhhhhcccc------cccccchhhhheeeecccCcccchhhhhh
Confidence 5554432 112234578999999998876544444330 12357899999999999754 44444
Q ss_pred c-CCCCCCEEECCCCcCccc----cchhccCCCCCCEEEccCCCCccc
Q 037325 543 S-NISFLYILDMSNNSLSGS----TPESIGSLRTVKFLVLRNNYLSGK 585 (598)
Q Consensus 543 ~-~l~~L~~L~ls~N~l~~~----~p~~l~~l~~L~~L~l~~n~l~g~ 585 (598)
. ..+.|++|+|++|+++.. ++..+...++|++|++++|+++..
T Consensus 365 ~~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~N~i~~~ 412 (460)
T d1z7xw1 365 GQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDA 412 (460)
T ss_dssp TSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCCCCCEEECCSSSCCHH
T ss_pred hcccCCCCEEECCCCCCChHHHHHHHHHHhcCCCCCEEECCCCcCCHH
Confidence 3 567899999999999853 556677789999999999999753
|
| >d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin H species: Listeria monocytogenes [TaxId: 1639]
Probab=99.73 E-value=1.1e-16 Score=147.92 Aligned_cols=197 Identities=24% Similarity=0.282 Sum_probs=103.0
Q ss_pred CCcceecCccccCCCCCCEEeCCCCCCCCCCcchhccCCCCCCEEECcCCCCCcccchhccCCCCCCEEEccCCCCCCCc
Q 037325 99 HELGGEISPSLLQLKDLEYLDLSMNNFTGFQVPEFIGSLKELRYLNLSGSFFSGTIPQTLGNLSNLLYLDLNNFLDQSNQ 178 (598)
Q Consensus 99 ~~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~~~~~~ 178 (598)
+.+++.+ .++.+.+|++|++.+|+++. ++ .+..+++|++|++++|.+++..| +..+++|+++++++|.....
T Consensus 29 ~~~~d~~--~~~~l~~L~~L~l~~~~i~~--l~-~l~~l~~L~~L~ls~n~i~~~~~--l~~l~~l~~l~~~~n~~~~i- 100 (227)
T d1h6ua2 29 SNVTDTV--TQADLDGITTLSAFGTGVTT--IE-GVQYLNNLIGLELKDNQITDLAP--LKNLTKITELELSGNPLKNV- 100 (227)
T ss_dssp SSTTSEE--CHHHHHTCCEEECTTSCCCC--CT-TGGGCTTCCEEECCSSCCCCCGG--GTTCCSCCEEECCSCCCSCC-
T ss_pred CCcCCcC--CHHHcCCcCEEECCCCCCCc--ch-hHhcCCCCcEeecCCceeecccc--cccccccccccccccccccc-
Confidence 3444433 34556677777777777763 43 46677777777777777764322 66667777777766544321
Q ss_pred cChhhhcCCCCCcEEEcCCCCCCCCcccchHhhhcCCCCCEEEcCCCCCCCCCCCCCcCCCCCccEEEccCCCCCCCcch
Q 037325 179 IDLEWLSGLSSLVYFNLGGADLSKAGAYWLEVFNKLHSFVELHLPNCNLPSLPLSFPSLNFASLQVLDLSNNDFNSTTPH 258 (598)
Q Consensus 179 ~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~ 258 (598)
..+.++++|+.++++++...+. ..+... +.++.+.++.+.+....
T Consensus 101 ---~~l~~l~~L~~l~l~~~~~~~~-----~~~~~~-------------------------~~~~~l~~~~~~~~~~~-- 145 (227)
T d1h6ua2 101 ---SAIAGLQSIKTLDLTSTQITDV-----TPLAGL-------------------------SNLQVLYLDLNQITNIS-- 145 (227)
T ss_dssp ---GGGTTCTTCCEEECTTSCCCCC-----GGGTTC-------------------------TTCCEEECCSSCCCCCG--
T ss_pred ---cccccccccccccccccccccc-----chhccc-------------------------cchhhhhchhhhhchhh--
Confidence 2245555555555555544433 123333 44455555544443322
Q ss_pred hhhcCCCCCEEEccCCcccccCCccccCCCCccEEECcCCCcCccccchhhcCCCCCCEEecccccCCcccchhhhCCCC
Q 037325 259 WLFNITSLLCLDLGSNDLQGDIPDGFASLNSLQELDLSGNSFLGGQLSRNLGKLCNLRTMILSRNNISSEVSDFLDGLSE 338 (598)
Q Consensus 259 ~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~ 338 (598)
.+..+++|+.|++++|.+.+. ..+.++++|++|++++|++ .+ ++ .++.+++|++|++++|++++..+ +..++
T Consensus 146 ~~~~~~~L~~L~l~~n~~~~~--~~l~~l~~L~~L~Ls~n~l-~~-l~-~l~~l~~L~~L~Ls~N~lt~i~~--l~~l~- 217 (227)
T d1h6ua2 146 PLAGLTNLQYLSIGNAQVSDL--TPLANLSKLTTLKADDNKI-SD-IS-PLASLPNLIEVHLKNNQISDVSP--LANTS- 217 (227)
T ss_dssp GGGGCTTCCEEECCSSCCCCC--GGGTTCTTCCEEECCSSCC-CC-CG-GGGGCTTCCEEECTTSCCCBCGG--GTTCT-
T ss_pred hhccccccccccccccccccc--hhhcccccceecccCCCcc-CC-Ch-hhcCCCCCCEEECcCCcCCCCcc--cccCC-
Confidence 234445555555555554422 1245555555555555552 22 22 24555556666665555554322 33343
Q ss_pred CCCCCCccEEEcc
Q 037325 339 CTNSILLEKLELR 351 (598)
Q Consensus 339 ~~~~~~L~~L~Ls 351 (598)
+|++|+++
T Consensus 218 -----~L~~L~ls 225 (227)
T d1h6ua2 218 -----NLFIVTLT 225 (227)
T ss_dssp -----TCCEEEEE
T ss_pred -----CCCEEEee
Confidence 55565554
|
| >d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin H species: Listeria monocytogenes [TaxId: 1639]
Probab=99.71 E-value=2.2e-16 Score=145.75 Aligned_cols=207 Identities=24% Similarity=0.274 Sum_probs=145.9
Q ss_pred CCCEEeCCCCCCCCCCcchhccCCCCCCEEECcCCCCCcccchhccCCCCCCEEEccCCCCCCCccChhhhcCCCCCcEE
Q 037325 114 DLEYLDLSMNNFTGFQVPEFIGSLKELRYLNLSGSFFSGTIPQTLGNLSNLLYLDLNNFLDQSNQIDLEWLSGLSSLVYF 193 (598)
Q Consensus 114 ~L~~L~Ls~n~l~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~~l~~L~~L 193 (598)
++..++++.+.+++. . .+..+.+|++|++.+|+++ .++ .+..+++|++|++++|.+....
T Consensus 20 ~~~~~~l~~~~~~d~-~--~~~~l~~L~~L~l~~~~i~-~l~-~l~~l~~L~~L~ls~n~i~~~~--------------- 79 (227)
T d1h6ua2 20 NAIKIAAGKSNVTDT-V--TQADLDGITTLSAFGTGVT-TIE-GVQYLNNLIGLELKDNQITDLA--------------- 79 (227)
T ss_dssp HHHHHHTTCSSTTSE-E--CHHHHHTCCEEECTTSCCC-CCT-TGGGCTTCCEEECCSSCCCCCG---------------
T ss_pred HHHHHHhCCCCcCCc-C--CHHHcCCcCEEECCCCCCC-cch-hHhcCCCCcEeecCCceeeccc---------------
Confidence 334456677776653 2 3355678888888888877 443 4667777777777766543221
Q ss_pred EcCCCCCCCCcccchHhhhcCCCCCEEEcCCCCCCCCCCCCCcCCCCCccEEEccCCCCCCCcchhhhcCCCCCEEEccC
Q 037325 194 NLGGADLSKAGAYWLEVFNKLHSFVELHLPNCNLPSLPLSFPSLNFASLQVLDLSNNDFNSTTPHWLFNITSLLCLDLGS 273 (598)
Q Consensus 194 ~l~~n~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~ 273 (598)
.+..+++++.+++++|.++.+. .+..+++|+.++++++...+.. .+...+.++.+.+++
T Consensus 80 ----------------~l~~l~~l~~l~~~~n~~~~i~---~l~~l~~L~~l~l~~~~~~~~~--~~~~~~~~~~l~~~~ 138 (227)
T d1h6ua2 80 ----------------PLKNLTKITELELSGNPLKNVS---AIAGLQSIKTLDLTSTQITDVT--PLAGLSNLQVLYLDL 138 (227)
T ss_dssp ----------------GGTTCCSCCEEECCSCCCSCCG---GGTTCTTCCEEECTTSCCCCCG--GGTTCTTCCEEECCS
T ss_pred ----------------cccccccccccccccccccccc---cccccccccccccccccccccc--hhccccchhhhhchh
Confidence 2444555555555555554432 3446678888888877766433 366778999999999
Q ss_pred CcccccCCccccCCCCccEEECcCCCcCccccchhhcCCCCCCEEecccccCCcccchhhhCCCCCCCCCCccEEEccCc
Q 037325 274 NDLQGDIPDGFASLNSLQELDLSGNSFLGGQLSRNLGKLCNLRTMILSRNNISSEVSDFLDGLSECTNSILLEKLELRFN 353 (598)
Q Consensus 274 n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~~~~~~~L~~L~Ls~n 353 (598)
+.+... ..+..+++|++|++.+|. .... ..++++++|++|++++|++.+.. .+..++ +|++|++++|
T Consensus 139 ~~~~~~--~~~~~~~~L~~L~l~~n~-~~~~--~~l~~l~~L~~L~Ls~n~l~~l~--~l~~l~------~L~~L~Ls~N 205 (227)
T d1h6ua2 139 NQITNI--SPLAGLTNLQYLSIGNAQ-VSDL--TPLANLSKLTTLKADDNKISDIS--PLASLP------NLIEVHLKNN 205 (227)
T ss_dssp SCCCCC--GGGGGCTTCCEEECCSSC-CCCC--GGGTTCTTCCEEECCSSCCCCCG--GGGGCT------TCCEEECTTS
T ss_pred hhhchh--hhhccccccccccccccc-cccc--hhhcccccceecccCCCccCCCh--hhcCCC------CCCEEECcCC
Confidence 888643 346778999999999998 3332 34789999999999999988643 366666 8999999999
Q ss_pred cccccCccccCCCCCCCEEEccC
Q 037325 354 QFTGILPISLGSLKNLRHLVLWQ 376 (598)
Q Consensus 354 ~l~~~~~~~l~~l~~L~~L~ls~ 376 (598)
++++. + .++++++|+.|++++
T Consensus 206 ~lt~i-~-~l~~l~~L~~L~lsn 226 (227)
T d1h6ua2 206 QISDV-S-PLANTSNLFIVTLTN 226 (227)
T ss_dssp CCCBC-G-GGTTCTTCCEEEEEE
T ss_pred cCCCC-c-ccccCCCCCEEEeeC
Confidence 99864 3 488999999999974
|
| >d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin B species: Listeria monocytogenes [TaxId: 1639]
Probab=99.69 E-value=3.5e-16 Score=142.22 Aligned_cols=165 Identities=27% Similarity=0.300 Sum_probs=87.2
Q ss_pred CCCCCCEEeCCCCCCCCCCcchhccCCCCCCEEECcCCCCCcccchhccCCCCCCEEEccCCCCCCCccChhhhcCCCCC
Q 037325 111 QLKDLEYLDLSMNNFTGFQVPEFIGSLKELRYLNLSGSFFSGTIPQTLGNLSNLLYLDLNNFLDQSNQIDLEWLSGLSSL 190 (598)
Q Consensus 111 ~l~~L~~L~Ls~n~l~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~~l~~L 190 (598)
.+..|++|++++|.++.. + .+..+++|++|++++|++++ ++ .++.+++|++|++++|.+... ..+.++++|
T Consensus 44 ~L~~L~~L~l~~~~i~~l--~-~l~~l~~L~~L~L~~n~i~~-l~-~~~~l~~L~~L~l~~n~i~~l----~~l~~l~~L 114 (210)
T d1h6ta2 44 ELNSIDQIIANNSDIKSV--Q-GIQYLPNVTKLFLNGNKLTD-IK-PLANLKNLGWLFLDENKVKDL----SSLKDLKKL 114 (210)
T ss_dssp HHHTCCEEECTTSCCCCC--T-TGGGCTTCCEEECCSSCCCC-CG-GGTTCTTCCEEECCSSCCCCG----GGGTTCTTC
T ss_pred HhcCccEEECcCCCCCCc--h-hHhhCCCCCEEeCCCccccC-cc-ccccCcccccccccccccccc----ccccccccc
Confidence 355667777777766632 2 25566677777777776663 33 245666666666666544321 124445555
Q ss_pred cEEEcCCCCCCCCcccchHhhhcCCCCCEEEcCCCCCCCCCCCCCcCCCCCccEEEccCCCCCCCcchhhhcCCCCCEEE
Q 037325 191 VYFNLGGADLSKAGAYWLEVFNKLHSFVELHLPNCNLPSLPLSFPSLNFASLQVLDLSNNDFNSTTPHWLFNITSLLCLD 270 (598)
Q Consensus 191 ~~L~l~~n~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~ 270 (598)
+.|++++|.+... ..+. .+++++.+++++|.+++. ..+..+++|+.++
T Consensus 115 ~~L~l~~~~~~~~-----~~l~-------------------------~l~~l~~l~~~~n~l~~~--~~~~~l~~L~~l~ 162 (210)
T d1h6ta2 115 KSLSLEHNGISDI-----NGLV-------------------------HLPQLESLYLGNNKITDI--TVLSRLTKLDTLS 162 (210)
T ss_dssp CEEECTTSCCCCC-----GGGG-------------------------GCTTCCEEECCSSCCCCC--GGGGGCTTCSEEE
T ss_pred ccccccccccccc-----cccc-------------------------cccccccccccccccccc--ccccccccccccc
Confidence 5555555544332 1233 444555555555554431 2344555555666
Q ss_pred ccCCcccccCCccccCCCCccEEECcCCCcCccccchhhcCCCCCCEEecc
Q 037325 271 LGSNDLQGDIPDGFASLNSLQELDLSGNSFLGGQLSRNLGKLCNLRTMILS 321 (598)
Q Consensus 271 l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~l~~l~~L~~L~l~ 321 (598)
+++|++++ ++ .+.++++|++|++++|.+ . .++ .+..+++|++|+++
T Consensus 163 l~~n~l~~-i~-~l~~l~~L~~L~Ls~N~i-~-~l~-~l~~l~~L~~L~Ls 208 (210)
T d1h6ta2 163 LEDNQISD-IV-PLAGLTKLQNLYLSKNHI-S-DLR-ALAGLKNLDVLELF 208 (210)
T ss_dssp CCSSCCCC-CG-GGTTCTTCCEEECCSSCC-C-BCG-GGTTCTTCSEEEEE
T ss_pred cccccccc-cc-cccCCCCCCEEECCCCCC-C-CCh-hhcCCCCCCEEEcc
Confidence 65555553 22 255556666666666652 2 233 35556666666654
|
| >d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin B species: Listeria monocytogenes [TaxId: 1639]
Probab=99.69 E-value=6.2e-16 Score=139.31 Aligned_cols=158 Identities=22% Similarity=0.283 Sum_probs=86.1
Q ss_pred CCcceecCccccCCCCCCEEeCCCCCCCCCCcchhccCCCCCCEEECcCCCCCcccchhccCCCCCCEEEccCCCCCCCc
Q 037325 99 HELGGEISPSLLQLKDLEYLDLSMNNFTGFQVPEFIGSLKELRYLNLSGSFFSGTIPQTLGNLSNLLYLDLNNFLDQSNQ 178 (598)
Q Consensus 99 ~~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~~~~~~ 178 (598)
+.+++.++ ...++++++|+++++.++. + +.++.+++|++|++++|++++. +. ++++++|++|++++|......
T Consensus 28 ~~~~~~~~--~~~l~~l~~L~l~~~~i~~--l-~~l~~l~nL~~L~Ls~N~l~~~-~~-l~~l~~L~~L~l~~n~~~~~~ 100 (199)
T d2omxa2 28 TNVTDTVS--QTDLDQVTTLQADRLGIKS--I-DGVEYLNNLTQINFSNNQLTDI-TP-LKNLTKLVDILMNNNQIADIT 100 (199)
T ss_dssp SSTTSEEC--HHHHTTCCEEECTTSCCCC--C-TTGGGCTTCCEEECCSSCCCCC-GG-GTTCTTCCEEECCSSCCCCCG
T ss_pred CCCCCccC--HHHhcCCCEEECCCCCCCC--c-cccccCCCcCcCccccccccCc-cc-ccCCccccccccccccccccc
Confidence 34444432 2456778888888887774 3 2466778888888888887743 32 777777777777776543322
Q ss_pred cChhhhcCCCCCcEEEcCCCCCCCCcccchHhhhcCCCCCEEEcCCCCCCCCCCCCCcCCCCCccEEEccCCCCCCCcch
Q 037325 179 IDLEWLSGLSSLVYFNLGGADLSKAGAYWLEVFNKLHSFVELHLPNCNLPSLPLSFPSLNFASLQVLDLSNNDFNSTTPH 258 (598)
Q Consensus 179 ~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~ 258 (598)
.+.++++|+.++++++..... ..+..+++|+.|++++|.+...+ .+..+++|++|++.+|++++..
T Consensus 101 ----~l~~l~~L~~L~l~~~~~~~~-----~~~~~l~~L~~L~l~~n~l~~~~---~l~~~~~L~~L~l~~n~l~~l~-- 166 (199)
T d2omxa2 101 ----PLANLTNLTGLTLFNNQITDI-----DPLKNLTNLNRLELSSNTISDIS---ALSGLTSLQQLNFSSNQVTDLK-- 166 (199)
T ss_dssp ----GGTTCTTCSEEECCSSCCCCC-----GGGTTCTTCSEEECCSSCCCCCG---GGTTCTTCSEEECCSSCCCCCG--
T ss_pred ----ccccccccccccccccccccc-----cccchhhhhHHhhhhhhhhcccc---cccccccccccccccccccCCc--
Confidence 255666666666666655443 12444455555555555444332 1233444444444444444321
Q ss_pred hhhcCCCCCEEEccCCccc
Q 037325 259 WLFNITSLLCLDLGSNDLQ 277 (598)
Q Consensus 259 ~l~~l~~L~~L~l~~n~l~ 277 (598)
.+.++++|++|++++|+++
T Consensus 167 ~l~~l~~L~~L~ls~N~i~ 185 (199)
T d2omxa2 167 PLANLTTLERLDISSNKVS 185 (199)
T ss_dssp GGTTCTTCCEEECCSSCCC
T ss_pred cccCCCCCCEEECCCCCCC
Confidence 1334444444444444443
|
| >d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Follicle-stimulating hormone receptor species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.67 E-value=1.6e-16 Score=148.50 Aligned_cols=93 Identities=16% Similarity=0.244 Sum_probs=57.8
Q ss_pred ecCccccCCCCCCEEeCCCCCCCCCCcch-hccCCCCCCEEECcCCCCCcccc-hhccCCCCCCEEEccCCCCCCCccCh
Q 037325 104 EISPSLLQLKDLEYLDLSMNNFTGFQVPE-FIGSLKELRYLNLSGSFFSGTIP-QTLGNLSNLLYLDLNNFLDQSNQIDL 181 (598)
Q Consensus 104 ~~~~~l~~l~~L~~L~Ls~n~l~~~~~p~-~~~~l~~L~~L~L~~n~l~~~~p-~~l~~l~~L~~L~L~~n~~~~~~~~~ 181 (598)
.+|..+. +++++|++++|+++. +|. .|.++++|++|++++|.+...++ ..|..+++++++.+..+.. ......
T Consensus 22 ~iP~~l~--~~l~~L~Ls~n~i~~--l~~~~f~~l~~L~~L~ls~n~~~~~i~~~~f~~l~~l~~l~~~~~n~-l~~~~~ 96 (242)
T d1xwdc1 22 EIPSDLP--RNAIELRFVLTKLRV--IQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANN-LLYINP 96 (242)
T ss_dssp SCCSCSC--SCCSEEEEESCCCCE--ECTTTTTTCTTCCEEEEESCTTCCEECSSSEESCTTCCEEEEECCTT-CCEECT
T ss_pred CcCCCCC--CCCCEEECcCCcCCc--cChhHhhccchhhhhhhccccccceeecccccccccccccccccccc-cccccc
Confidence 4554442 578999999999884 444 67889999999999998875544 3567788888887755321 112222
Q ss_pred hhhcCCCCCcEEEcCCCCCC
Q 037325 182 EWLSGLSSLVYFNLGGADLS 201 (598)
Q Consensus 182 ~~~~~l~~L~~L~l~~n~~~ 201 (598)
..+.++++|+++++++|.+.
T Consensus 97 ~~~~~l~~L~~l~l~~~~l~ 116 (242)
T d1xwdc1 97 EAFQNLPNLQYLLISNTGIK 116 (242)
T ss_dssp TSEECCTTCCEEEEESCCCC
T ss_pred ccccccccccccccchhhhc
Confidence 23444444444444444443
|
| >d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: Cyclin A/CDK2-associated p19, Skp2 domain: Cyclin A/CDK2-associated p19, Skp2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.66 E-value=3.6e-17 Score=156.36 Aligned_cols=185 Identities=23% Similarity=0.240 Sum_probs=96.9
Q ss_pred CCCCCEEeCCCCCCCCCCcchhccCCCCCCEEECcCCCCCcccchhccCCCCCCEEEccCCCCCCCccChhhhcCCCCCc
Q 037325 112 LKDLEYLDLSMNNFTGFQVPEFIGSLKELRYLNLSGSFFSGTIPQTLGNLSNLLYLDLNNFLDQSNQIDLEWLSGLSSLV 191 (598)
Q Consensus 112 l~~L~~L~Ls~n~l~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~~l~~L~ 191 (598)
..+|++||++++.+....++..+.++++|++|++++|.+++..+..++.+++|++|++++|..
T Consensus 45 ~~~L~~LdLs~~~i~~~~l~~l~~~c~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~Ls~c~~----------------- 107 (284)
T d2astb2 45 PFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSG----------------- 107 (284)
T ss_dssp CBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBS-----------------
T ss_pred CCCCCEEECCCCccCHHHHHHHHHhCCCcccccccccCCCcHHHHHHhcCCCCcCcccccccc-----------------
Confidence 345566666655554332344455556666666666655555555555555566665555432
Q ss_pred EEEcCCCCCCCCcccchHhhhcCCCCCEEEcCCCC-CCCCCCC-CCcCCCCCccEEEccCC--CCCCC-cchhhhcCCCC
Q 037325 192 YFNLGGADLSKAGAYWLEVFNKLHSFVELHLPNCN-LPSLPLS-FPSLNFASLQVLDLSNN--DFNST-TPHWLFNITSL 266 (598)
Q Consensus 192 ~L~l~~n~~~~~~~~~~~~~~~l~~L~~L~l~~~~-l~~~~~~-~~~~~l~~L~~L~L~~n--~l~~~-~~~~l~~l~~L 266 (598)
+++.. +......+++|++|++++|. +++.... .....+++|+.|+++++ .++.. +.....++++|
T Consensus 108 --------itd~~--l~~l~~~~~~L~~L~ls~c~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~i~~~~l~~l~~~~~~L 177 (284)
T d2astb2 108 --------FSEFA--LQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNL 177 (284)
T ss_dssp --------CCHHH--HHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTC
T ss_pred --------ccccc--cchhhHHHHhccccccccccccccccchhhhcccccccchhhhcccccccccccccccccccccc
Confidence 22111 01122344455555554442 2211100 01112345666666654 23322 22233466777
Q ss_pred CEEEccCC-cccccCCccccCCCCccEEECcCCCcCccccchhhcCCCCCCEEecccc
Q 037325 267 LCLDLGSN-DLQGDIPDGFASLNSLQELDLSGNSFLGGQLSRNLGKLCNLRTMILSRN 323 (598)
Q Consensus 267 ~~L~l~~n-~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~l~~l~~L~~L~l~~n 323 (598)
++|++++| .+++.....+..+++|++|++++|..+++.....++++++|++|+++++
T Consensus 178 ~~L~L~~~~~itd~~~~~l~~~~~L~~L~L~~C~~i~~~~l~~L~~~~~L~~L~l~~~ 235 (284)
T d2astb2 178 VHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI 235 (284)
T ss_dssp SEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS
T ss_pred cccccccccCCCchhhhhhcccCcCCEEECCCCCCCChHHHHHHhcCCCCCEEeeeCC
Confidence 77777765 3555555666677777777777764345555556677777777777776
|
| >d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Follicle-stimulating hormone receptor species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.65 E-value=4.7e-16 Score=145.16 Aligned_cols=202 Identities=20% Similarity=0.141 Sum_probs=109.5
Q ss_pred CccEEEccCccccccCccccCCCCCCCEEEccCCcCCccch-hhccCCCCCCEEeCcC-CcCCcccCCCchhhhcCCCCC
Q 037325 344 LLEKLELRFNQFTGILPISLGSLKNLRHLVLWQNSFLGSIP-PSIGNLTLLKELYLAS-NQMNGQKISDSYQHLKNQTEL 421 (598)
Q Consensus 344 ~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~ls~n~l~~~~~-~~l~~l~~L~~L~l~~-n~l~~~~~~~~~~~l~~~~~L 421 (598)
++++|++++|+++...+..|.++++|++|++++|.+...++ ..+..++.++++.+.. |.+.... + ..+.++++|
T Consensus 30 ~l~~L~Ls~n~i~~l~~~~f~~l~~L~~L~ls~n~~~~~i~~~~f~~l~~l~~l~~~~~n~l~~~~-~---~~~~~l~~L 105 (242)
T d1xwdc1 30 NAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYIN-P---EAFQNLPNL 105 (242)
T ss_dssp CCSEEEEESCCCCEECTTTTTTCTTCCEEEEESCTTCCEECSSSEESCTTCCEEEEECCTTCCEEC-T---TSEECCTTC
T ss_pred CCCEEECcCCcCCccChhHhhccchhhhhhhccccccceeeccccccccccccccccccccccccc-c---ccccccccc
Confidence 45666666666654433445566666666666665554332 2355566666665543 3443322 2 124555556
Q ss_pred CEEEccCccCccccchHHHhcCCCCCEEEccCCcCcccCCCCcccCCCCEEEcccCcCcccCCCCCcCCcEEEccCCccc
Q 037325 422 RTLVLNKARISDTISDWFWQLSLTLDELDVAYNELRGRVPNSLGFNFPAKVDLSFNNFEGRLLLWSFNVTKLYLRDNSFS 501 (598)
Q Consensus 422 ~~L~l~~n~l~~~~~~~~~~~~~~L~~L~ls~n~~~~~~p~~~~~~~L~~l~ls~n~l~~~~~~~~~~L~~L~ls~n~l~ 501 (598)
+.+++++|++....+.........+..+...++.+....+..+.. ....++.+++++|+++
T Consensus 106 ~~l~l~~~~l~~~~~~~~~~~l~~l~~~~~~n~~l~~i~~~~~~~-------------------~~~~l~~L~l~~n~l~ 166 (242)
T d1xwdc1 106 QYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVG-------------------LSFESVILWLNKNGIQ 166 (242)
T ss_dssp CEEEEESCCCCSCCCCTTTCBSSCEEEEEESCTTCCEECTTSSTT-------------------SBSSCEEEECCSSCCC
T ss_pred cccccchhhhccccccccccccccccccccccccccccccccccc-------------------ccccceeeeccccccc
Confidence 666666665544333222222333444444444443221111110 1235677888888887
Q ss_pred ccCCchhhcccCCCCCccccCCCCeE-eCcCCccccccchhccCCCCCCEEECCCCcCccccchhccCCCCCCEEEccC
Q 037325 502 GLIPNDIGQNLPFLTDLGNLKQLITL-VISNNNLSGEIPLLFSNISFLYILDMSNNSLSGSTPESIGSLRTVKFLVLRN 579 (598)
Q Consensus 502 ~~~p~~~~~~~~~~~~~~~l~~L~~L-~Ls~N~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~l~~l~~L~~L~l~~ 579 (598)
.++..... ...++.+ ++++|+++...+..|.++++|++|++++|+++...+..|.++++|+++++.+
T Consensus 167 -~i~~~~~~----------~~~l~~~~~l~~n~l~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~l~~~~ 234 (242)
T d1xwdc1 167 -EIHNCAFN----------GTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSYGLENLKKLRARSTYN 234 (242)
T ss_dssp -EECTTTTT----------TCCEEEEECTTCTTCCCCCTTTTTTSCCCSEEECTTSCCCCCCSSSCTTCCEEESSSEES
T ss_pred -cccccccc----------chhhhccccccccccccccHHHhcCCCCCCEEECCCCcCCccCHHHHcCCcccccCcCCC
Confidence 34443333 3455444 5677888843345678899999999999999854445567776666665543
|
| >d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin B species: Listeria monocytogenes [TaxId: 1639]
Probab=99.65 E-value=2.7e-15 Score=136.27 Aligned_cols=162 Identities=23% Similarity=0.260 Sum_probs=123.1
Q ss_pred cEEEEEcCCCCCCCCCCcccCCCCCcceecCccccCCCCCCEEeCCCCCCCCCCcchhccCCCCCCEEECcCCCCCcccc
Q 037325 76 SVIKLNLNNPFRDSFGSFEDDAGHELGGEISPSLLQLKDLEYLDLSMNNFTGFQVPEFIGSLKELRYLNLSGSFFSGTIP 155 (598)
Q Consensus 76 ~v~~L~L~~~~~~~~~~~~~~~~~~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p 155 (598)
.++.|++++ +.+.+. ..+..+++|++|++++|.+++ ++ .++.+++|++|++++|+++ .+|
T Consensus 47 ~L~~L~l~~--------------~~i~~l--~~l~~l~~L~~L~L~~n~i~~--l~-~~~~l~~L~~L~l~~n~i~-~l~ 106 (210)
T d1h6ta2 47 SIDQIIANN--------------SDIKSV--QGIQYLPNVTKLFLNGNKLTD--IK-PLANLKNLGWLFLDENKVK-DLS 106 (210)
T ss_dssp TCCEEECTT--------------SCCCCC--TTGGGCTTCCEEECCSSCCCC--CG-GGTTCTTCCEEECCSSCCC-CGG
T ss_pred CccEEECcC--------------CCCCCc--hhHhhCCCCCEEeCCCccccC--cc-ccccCcccccccccccccc-ccc
Confidence 577888887 555543 247889999999999999995 44 3688999999999999998 466
Q ss_pred hhccCCCCCCEEEccCCCCCCCccChhhhcCCCCCcEEEcCCCCCCCCcccchHhhhcCCCCCEEEcCCCCCCCCCCCCC
Q 037325 156 QTLGNLSNLLYLDLNNFLDQSNQIDLEWLSGLSSLVYFNLGGADLSKAGAYWLEVFNKLHSFVELHLPNCNLPSLPLSFP 235 (598)
Q Consensus 156 ~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~ 235 (598)
.+..+++|++|++++|..... ..+..++.++.+++++|.+++. ..+..+++|+++++++|.++++++
T Consensus 107 -~l~~l~~L~~L~l~~~~~~~~----~~l~~l~~l~~l~~~~n~l~~~-----~~~~~l~~L~~l~l~~n~l~~i~~--- 173 (210)
T d1h6ta2 107 -SLKDLKKLKSLSLEHNGISDI----NGLVHLPQLESLYLGNNKITDI-----TVLSRLTKLDTLSLEDNQISDIVP--- 173 (210)
T ss_dssp -GGTTCTTCCEEECTTSCCCCC----GGGGGCTTCCEEECCSSCCCCC-----GGGGGCTTCSEEECCSSCCCCCGG---
T ss_pred -ccccccccccccccccccccc----cccccccccccccccccccccc-----cccccccccccccccccccccccc---
Confidence 588999999999999876433 3478899999999999998765 345667777777777777766532
Q ss_pred cCCCCCccEEEccCCCCCCCcchhhhcCCCCCEEEcc
Q 037325 236 SLNFASLQVLDLSNNDFNSTTPHWLFNITSLLCLDLG 272 (598)
Q Consensus 236 ~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~ 272 (598)
+.++++|++|++++|+++. ++ .+.++++|++|+++
T Consensus 174 l~~l~~L~~L~Ls~N~i~~-l~-~l~~l~~L~~L~Ls 208 (210)
T d1h6ta2 174 LAGLTKLQNLYLSKNHISD-LR-ALAGLKNLDVLELF 208 (210)
T ss_dssp GTTCTTCCEEECCSSCCCB-CG-GGTTCTTCSEEEEE
T ss_pred ccCCCCCCEEECCCCCCCC-Ch-hhcCCCCCCEEEcc
Confidence 4566777777777777664 33 36666777777665
|
| >d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: Cyclin A/CDK2-associated p19, Skp2 domain: Cyclin A/CDK2-associated p19, Skp2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.64 E-value=3.9e-16 Score=149.03 Aligned_cols=259 Identities=17% Similarity=0.147 Sum_probs=168.6
Q ss_pred cEEECcCCCcCccccchhhcCCCCCCEEecccccCCcccchhhhCCCCCCCCCCccEEEccCcccccc-CccccCCCCCC
Q 037325 291 QELDLSGNSFLGGQLSRNLGKLCNLRTMILSRNNISSEVSDFLDGLSECTNSILLEKLELRFNQFTGI-LPISLGSLKNL 369 (598)
Q Consensus 291 ~~L~l~~n~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~~~~~~~L~~L~Ls~n~l~~~-~~~~l~~l~~L 369 (598)
+++|++++.+..+.+...+.. ....+.+............+ ... +|++|+++++.++.. +...+..+++|
T Consensus 3 ~~lDLs~~~l~~~~l~~l~~~--~~~~lrl~~~~~~~~~~~~~-~~~------~L~~LdLs~~~i~~~~l~~l~~~c~~L 73 (284)
T d2astb2 3 QTLDLTGKNLHPDVTGRLLSQ--GVIAFRCPRSFMDQPLAEHF-SPF------RVQHMDLSNSVIEVSTLHGILSQCSKL 73 (284)
T ss_dssp SEEECTTCBCCHHHHHHHHHT--TCSEEECTTCEECSCCCSCC-CCB------CCCEEECTTCEECHHHHHHHHTTBCCC
T ss_pred CEEECCCCCCCchHHHHHHhc--cceEeeccccccccchhhhc-cCC------CCCEEECCCCccCHHHHHHHHHhCCCc
Confidence 478888877322222222221 34556665554433222211 112 688999988887644 34456788889
Q ss_pred CEEEccCCcCCccchhhccCCCCCCEEeCcCC-cCCcccCCCchhh-hcCCCCCCEEEccCcc-Ccccc-chHHHhcCCC
Q 037325 370 RHLVLWQNSFLGSIPPSIGNLTLLKELYLASN-QMNGQKISDSYQH-LKNQTELRTLVLNKAR-ISDTI-SDWFWQLSLT 445 (598)
Q Consensus 370 ~~L~ls~n~l~~~~~~~l~~l~~L~~L~l~~n-~l~~~~~~~~~~~-l~~~~~L~~L~l~~n~-l~~~~-~~~~~~~~~~ 445 (598)
++|++++|.+.+..+..+..+++|++|++++| .+++.. +.. ...+++|++|++++|. +++.. ...+...++.
T Consensus 74 ~~L~L~~~~l~~~~~~~l~~~~~L~~L~Ls~c~~itd~~----l~~l~~~~~~L~~L~ls~c~~~~~~~~~~~~~~~~~~ 149 (284)
T d2astb2 74 QNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFA----LQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSET 149 (284)
T ss_dssp SEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHH----HHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTT
T ss_pred ccccccccCCCcHHHHHHhcCCCCcCccccccccccccc----cchhhHHHHhccccccccccccccccchhhhcccccc
Confidence 99999998888777778888888999999886 454322 222 3567888888888864 54432 2334444567
Q ss_pred CCEEEccCCc--CcccCCCCcccCCCCEEEcccCcCcccCCCCCcCCcEEEccCC-cccccCCchhhcccCCCCCccccC
Q 037325 446 LDELDVAYNE--LRGRVPNSLGFNFPAKVDLSFNNFEGRLLLWSFNVTKLYLRDN-SFSGLIPNDIGQNLPFLTDLGNLK 522 (598)
Q Consensus 446 L~~L~ls~n~--~~~~~p~~~~~~~L~~l~ls~n~l~~~~~~~~~~L~~L~ls~n-~l~~~~p~~~~~~~~~~~~~~~l~ 522 (598)
|+.|+++++. ++.. .+ ..+...+++|++|++++| .+++..+..+.+ ++
T Consensus 150 L~~L~l~~~~~~i~~~------------------~l-~~l~~~~~~L~~L~L~~~~~itd~~~~~l~~----------~~ 200 (284)
T d2astb2 150 ITQLNLSGYRKNLQKS------------------DL-STLVRRCPNLVHLDLSDSVMLKNDCFQEFFQ----------LN 200 (284)
T ss_dssp CCEEECCSCGGGSCHH------------------HH-HHHHHHCTTCSEEECTTCTTCCGGGGGGGGG----------CT
T ss_pred cchhhhcccccccccc------------------cc-cccccccccccccccccccCCCchhhhhhcc----------cC
Confidence 8888887642 2210 00 011223578999999987 477777777766 89
Q ss_pred CCCeEeCcCC-ccccccchhccCCCCCCEEECCCCcCccccchhccCCCCCCEEEccCCCCcccCCcCccCcC
Q 037325 523 QLITLVISNN-NLSGEIPLLFSNISFLYILDMSNNSLSGSTPESIGSLRTVKFLVLRNNYLSGKLPLSLKNCT 594 (598)
Q Consensus 523 ~L~~L~Ls~N-~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~l~~l~~L~~L~l~~n~l~g~~P~~~~~~~ 594 (598)
+|++|++++| .+++.....++++++|+.|+++++--.+.++.-...+++| ++..+++++..|..+++..
T Consensus 201 ~L~~L~L~~C~~i~~~~l~~L~~~~~L~~L~l~~~~~d~~l~~l~~~lp~L---~i~~~~ls~~~~~~~~~~~ 270 (284)
T d2astb2 201 YLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGIVPDGTLQLLKEALPHL---QINCSHFTTIARPTIGNKK 270 (284)
T ss_dssp TCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTSSCTTCHHHHHHHSTTS---EESCCCSCCTTCSSCSSTT
T ss_pred cCCEEECCCCCCCChHHHHHHhcCCCCCEEeeeCCCCHHHHHHHHHhCccc---cccCccCCCCCCCccCccc
Confidence 9999999995 6887777888999999999999983333333333445554 4678888887777777654
|
| >d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin B species: Listeria monocytogenes [TaxId: 1639]
Probab=99.63 E-value=6.4e-15 Score=132.54 Aligned_cols=160 Identities=24% Similarity=0.324 Sum_probs=132.7
Q ss_pred CcEEEEEcCCCCCCCCCCcccCCCCCcceecCccccCCCCCCEEeCCCCCCCCCCcchhccCCCCCCEEECcCCCCCccc
Q 037325 75 ASVIKLNLNNPFRDSFGSFEDDAGHELGGEISPSLLQLKDLEYLDLSMNNFTGFQVPEFIGSLKELRYLNLSGSFFSGTI 154 (598)
Q Consensus 75 ~~v~~L~L~~~~~~~~~~~~~~~~~~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~p~~~~~l~~L~~L~L~~n~l~~~~ 154 (598)
.+++.|++++ +++.. + ..+..+++|++|++++|++++. +. +.++++|++|++++|.+. .+
T Consensus 40 ~~l~~L~l~~--------------~~i~~-l-~~l~~l~nL~~L~Ls~N~l~~~--~~-l~~l~~L~~L~l~~n~~~-~~ 99 (199)
T d2omxa2 40 DQVTTLQADR--------------LGIKS-I-DGVEYLNNLTQINFSNNQLTDI--TP-LKNLTKLVDILMNNNQIA-DI 99 (199)
T ss_dssp TTCCEEECTT--------------SCCCC-C-TTGGGCTTCCEEECCSSCCCCC--GG-GTTCTTCCEEECCSSCCC-CC
T ss_pred cCCCEEECCC--------------CCCCC-c-cccccCCCcCcCccccccccCc--cc-ccCCcccccccccccccc-cc
Confidence 4678899988 55553 2 3578899999999999999854 43 789999999999999987 45
Q ss_pred chhccCCCCCCEEEccCCCCCCCccChhhhcCCCCCcEEEcCCCCCCCCcccchHhhhcCCCCCEEEcCCCCCCCCCCCC
Q 037325 155 PQTLGNLSNLLYLDLNNFLDQSNQIDLEWLSGLSSLVYFNLGGADLSKAGAYWLEVFNKLHSFVELHLPNCNLPSLPLSF 234 (598)
Q Consensus 155 p~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~ 234 (598)
+ .+.++++|++|++++|...... .+..+++|+++++++|.+... ..+..+++|++|++.+|.+++++
T Consensus 100 ~-~l~~l~~L~~L~l~~~~~~~~~----~~~~l~~L~~L~l~~n~l~~~-----~~l~~~~~L~~L~l~~n~l~~l~--- 166 (199)
T d2omxa2 100 T-PLANLTNLTGLTLFNNQITDID----PLKNLTNLNRLELSSNTISDI-----SALSGLTSLQQLNFSSNQVTDLK--- 166 (199)
T ss_dssp G-GGTTCTTCSEEECCSSCCCCCG----GGTTCTTCSEEECCSSCCCCC-----GGGTTCTTCSEEECCSSCCCCCG---
T ss_pred c-cccccccccccccccccccccc----ccchhhhhHHhhhhhhhhccc-----ccccccccccccccccccccCCc---
Confidence 5 3889999999999998765433 378899999999999998764 35889999999999999999875
Q ss_pred CcCCCCCccEEEccCCCCCCCcchhhhcCCCCCEE
Q 037325 235 PSLNFASLQVLDLSNNDFNSTTPHWLFNITSLLCL 269 (598)
Q Consensus 235 ~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L 269 (598)
.+.++++|++|++++|++++. + .+..+++|+.|
T Consensus 167 ~l~~l~~L~~L~ls~N~i~~i-~-~l~~L~~L~~L 199 (199)
T d2omxa2 167 PLANLTTLERLDISSNKVSDI-S-VLAKLTNLESL 199 (199)
T ss_dssp GGTTCTTCCEEECCSSCCCCC-G-GGGGCTTCSEE
T ss_pred cccCCCCCCEEECCCCCCCCC-c-cccCCCCCCcC
Confidence 367889999999999999863 3 47888888875
|
| >d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Slit species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=99.60 E-value=1.5e-15 Score=136.00 Aligned_cols=131 Identities=27% Similarity=0.332 Sum_probs=87.8
Q ss_pred CEEEccCCcccccCCccccCCCCccEEECcCCCcCccccchhhcCCCCCCEEecccccCCcccchhhhCCCCCCCCCCcc
Q 037325 267 LCLDLGSNDLQGDIPDGFASLNSLQELDLSGNSFLGGQLSRNLGKLCNLRTMILSRNNISSEVSDFLDGLSECTNSILLE 346 (598)
Q Consensus 267 ~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~~~~~~~L~ 346 (598)
+.++.++++++ .+|..+. +++++|++++|++.....+..|..+++|++|++++|.+....+..+..++ +|+
T Consensus 11 ~~v~Cs~~~L~-~iP~~lp--~~l~~L~Ls~N~i~~~~~~~~f~~l~~L~~L~L~~N~i~~~~~~~~~~~~------~L~ 81 (192)
T d1w8aa_ 11 TTVDCTGRGLK-EIPRDIP--LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGAS------HIQ 81 (192)
T ss_dssp TEEECTTSCCS-SCCSCCC--TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCT------TCC
T ss_pred CEEEEeCCCcC-ccCCCCC--CCCCEEEeCCCCCcccccccccCCCceEeeeecccccccccccccccccc------ccc
Confidence 35566666665 4554442 46677777777732223345566777777777777777766666666666 677
Q ss_pred EEEccCccccccCccccCCCCCCCEEEccCCcCCccchhhccCCCCCCEEeCcCCcCCcc
Q 037325 347 KLELRFNQFTGILPISLGSLKNLRHLVLWQNSFLGSIPPSIGNLTLLKELYLASNQMNGQ 406 (598)
Q Consensus 347 ~L~Ls~n~l~~~~~~~l~~l~~L~~L~ls~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~ 406 (598)
+|++++|+++...+..|.++++|++|++++|++++..+..|..+++|+++++++|.+...
T Consensus 82 ~L~Ls~N~l~~l~~~~F~~l~~L~~L~L~~N~l~~i~~~~f~~l~~L~~l~L~~N~~~~~ 141 (192)
T d1w8aa_ 82 ELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCN 141 (192)
T ss_dssp EEECCSCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCCS
T ss_pred eeeeccccccccCHHHHhCCCcccccccCCccccccCHHHhcCCcccccccccccccccc
Confidence 777777777766666777777777777777777766666677777777777777776543
|
| >d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Slit species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=99.56 E-value=5.3e-15 Score=132.26 Aligned_cols=109 Identities=27% Similarity=0.351 Sum_probs=49.1
Q ss_pred CccEEEccCCCCCCC-cchhhhcCCCCCEEEccCCcccccCCccccCCCCccEEECcCCCcCccccchhhcCCCCCCEEe
Q 037325 241 SLQVLDLSNNDFNST-TPHWLFNITSLLCLDLGSNDLQGDIPDGFASLNSLQELDLSGNSFLGGQLSRNLGKLCNLRTMI 319 (598)
Q Consensus 241 ~L~~L~L~~n~l~~~-~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~l~~l~~L~~L~ 319 (598)
++++|+|++|++++. .+..+.++++|+.|++++|.+.+..+..+..+++|++|++++|+ +....+..|.++++|++|+
T Consensus 30 ~l~~L~Ls~N~i~~~~~~~~f~~l~~L~~L~L~~N~i~~~~~~~~~~~~~L~~L~Ls~N~-l~~l~~~~F~~l~~L~~L~ 108 (192)
T d1w8aa_ 30 HTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENK-IKEISNKMFLGLHQLKTLN 108 (192)
T ss_dssp TCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCC-CCEECSSSSTTCTTCCEEE
T ss_pred CCCEEEeCCCCCcccccccccCCCceEeeeeccccccccccccccccccccceeeecccc-ccccCHHHHhCCCcccccc
Confidence 344444444444332 22333444444444444444444444444444444444444444 3333334444444444444
Q ss_pred cccccCCcccchhhhCCCCCCCCCCccEEEccCcccc
Q 037325 320 LSRNNISSEVSDFLDGLSECTNSILLEKLELRFNQFT 356 (598)
Q Consensus 320 l~~n~l~~~~~~~~~~l~~~~~~~~L~~L~Ls~n~l~ 356 (598)
|++|++++..+..|..++ +|++|++++|.+.
T Consensus 109 L~~N~l~~i~~~~f~~l~------~L~~l~L~~N~~~ 139 (192)
T d1w8aa_ 109 LYDNQISCVMPGSFEHLN------SLTSLNLASNPFN 139 (192)
T ss_dssp CCSSCCCEECTTSSTTCT------TCCEEECTTCCBC
T ss_pred cCCccccccCHHHhcCCc------ccccccccccccc
Confidence 444444444444444444 4555555554443
|
| >d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: Rna1p (RanGAP1), N-terminal domain domain: Rna1p (RanGAP1), N-terminal domain species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]
Probab=99.54 E-value=3.4e-15 Score=147.03 Aligned_cols=258 Identities=22% Similarity=0.192 Sum_probs=148.2
Q ss_pred ccchhhcCCCCCCEEecccccCCcccchhhhCCCCCCCCCCccEEEccCcccccc----------CccccCCCCCCCEEE
Q 037325 304 QLSRNLGKLCNLRTMILSRNNISSEVSDFLDGLSECTNSILLEKLELRFNQFTGI----------LPISLGSLKNLRHLV 373 (598)
Q Consensus 304 ~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~~~~~~~L~~L~Ls~n~l~~~----------~~~~l~~l~~L~~L~ 373 (598)
.+...+.....++.|++++|.+.......+...- ...+.|+.++++++..... +...+..+++|+.|+
T Consensus 22 ~l~~~L~~~~~l~~L~Ls~n~i~~~~~~~l~~~l--~~~~~L~~l~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~L~~L~ 99 (344)
T d2ca6a1 22 SVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENI--ASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVR 99 (344)
T ss_dssp TTSHHHHHCSCCCEEECTTSEECHHHHHHHHHTT--TTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEE
T ss_pred HHHHHHhhCCCCCEEECcCCcCCHHHHHHHHHHH--HhCCCCCEEECCCCcccccccccchHHHHHHHHHhhCCCccccc
Confidence 3445566678888888888887766554443221 1122788888877644311 122345567777777
Q ss_pred ccCCcCCcc----chhhccCCCCCCEEeCcCCcCCcccCCCch---------hhhcCCCCCCEEEccCccCccccchHHH
Q 037325 374 LWQNSFLGS----IPPSIGNLTLLKELYLASNQMNGQKISDSY---------QHLKNQTELRTLVLNKARISDTISDWFW 440 (598)
Q Consensus 374 ls~n~l~~~----~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~---------~~l~~~~~L~~L~l~~n~l~~~~~~~~~ 440 (598)
+++|.+... +...+...++|++|++++|.+......... ......+.|+.+.+++|+++......+.
T Consensus 100 L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~~~~~~~~~~L~~l~l~~n~i~~~~~~~l~ 179 (344)
T d2ca6a1 100 LSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWA 179 (344)
T ss_dssp CCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHH
T ss_pred ccccccccccccchhhhhcccccchheecccccccccccccccccccccccccccccCcccceeeccccccccccccccc
Confidence 777776653 233345567777777777766432100000 0123455677777777766543332221
Q ss_pred ---hcCCCCCEEEccCCcCcccCCCCcccCCCCEEEcccCcCcccCCCCCcCCcEEEccCCcccccCCchhhcccCCCCC
Q 037325 441 ---QLSLTLDELDVAYNELRGRVPNSLGFNFPAKVDLSFNNFEGRLLLWSFNVTKLYLRDNSFSGLIPNDIGQNLPFLTD 517 (598)
Q Consensus 441 ---~~~~~L~~L~ls~n~~~~~~p~~~~~~~L~~l~ls~n~l~~~~~~~~~~L~~L~ls~n~l~~~~p~~~~~~~~~~~~ 517 (598)
..++.|+++++++|++.......+ -.......++|+.|++++|.++......+.. .
T Consensus 180 ~~l~~~~~L~~L~L~~n~i~~~g~~~~---------------l~~~l~~~~~L~~L~Ls~N~i~~~g~~~L~~------~ 238 (344)
T d2ca6a1 180 KTFQSHRLLHTVKMVQNGIRPEGIEHL---------------LLEGLAYCQELKVLDLQDNTFTHLGSSALAI------A 238 (344)
T ss_dssp HHHHHCTTCCEEECCSSCCCHHHHHHH---------------HHTTGGGCTTCCEEECCSSCCHHHHHHHHHH------H
T ss_pred chhhhhhhhcccccccccccccccccc---------------hhhhhcchhhhcccccccccccccccccccc------c
Confidence 124566666666666542100000 0011223567888888888876543222322 1
Q ss_pred ccccCCCCeEeCcCCccccccch----hcc--CCCCCCEEECCCCcCccc----cchhcc-CCCCCCEEEccCCCCcc
Q 037325 518 LGNLKQLITLVISNNNLSGEIPL----LFS--NISFLYILDMSNNSLSGS----TPESIG-SLRTVKFLVLRNNYLSG 584 (598)
Q Consensus 518 ~~~l~~L~~L~Ls~N~l~~~~p~----~~~--~l~~L~~L~ls~N~l~~~----~p~~l~-~l~~L~~L~l~~n~l~g 584 (598)
+..++.|++|+|++|.+++.-.. .+. ..+.|++|++++|+++.. +...+. +.++|++|++++|++..
T Consensus 239 l~~~~~L~~L~Ls~n~i~~~g~~~l~~~l~~~~~~~L~~L~ls~N~i~~~~~~~l~~~l~~~~~~L~~L~l~~N~~~~ 316 (344)
T d2ca6a1 239 LKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSE 316 (344)
T ss_dssp GGGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCT
T ss_pred ccccccchhhhhhcCccCchhhHHHHHHhhhccCCCCCEEECCCCcCChHHHHHHHHHHHccCCCCCEEECCCCcCCC
Confidence 23377888899999888764222 232 246788999999988754 333342 56788999999998863
|
| >d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: Rna1p (RanGAP1), N-terminal domain domain: Rna1p (RanGAP1), N-terminal domain species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]
Probab=99.54 E-value=2.4e-15 Score=148.19 Aligned_cols=114 Identities=19% Similarity=0.146 Sum_probs=55.2
Q ss_pred CccEEEccCcccccc-----CccccCCCCCCCEEEccCCcCCcc----chhhccCCCCCCEEeCcCCcCCcccCCCchhh
Q 037325 344 LLEKLELRFNQFTGI-----LPISLGSLKNLRHLVLWQNSFLGS----IPPSIGNLTLLKELYLASNQMNGQKISDSYQH 414 (598)
Q Consensus 344 ~L~~L~Ls~n~l~~~-----~~~~l~~l~~L~~L~ls~n~l~~~----~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~ 414 (598)
.|++|++++|.+... +...+..+++|+.|++++|.++.. +...+..+++|++|++++|.+++..+......
T Consensus 187 ~L~~L~L~~n~i~~~g~~~~l~~~l~~~~~L~~L~Ls~N~i~~~g~~~L~~~l~~~~~L~~L~Ls~n~i~~~g~~~l~~~ 266 (344)
T d2ca6a1 187 LLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDA 266 (344)
T ss_dssp TCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHHHHHH
T ss_pred hhcccccccccccccccccchhhhhcchhhhcccccccccccccccccccccccccccchhhhhhcCccCchhhHHHHHH
Confidence 455555555544321 122334455566666665555432 22334555666666666666554332222222
Q ss_pred hcC--CCCCCEEEccCccCccccchH----HHhcCCCCCEEEccCCcCc
Q 037325 415 LKN--QTELRTLVLNKARISDTISDW----FWQLSLTLDELDVAYNELR 457 (598)
Q Consensus 415 l~~--~~~L~~L~l~~n~l~~~~~~~----~~~~~~~L~~L~ls~n~~~ 457 (598)
+.. .+.|++|++++|+++...... +....+.|++|++++|.+.
T Consensus 267 l~~~~~~~L~~L~ls~N~i~~~~~~~l~~~l~~~~~~L~~L~l~~N~~~ 315 (344)
T d2ca6a1 267 FSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFS 315 (344)
T ss_dssp HHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSC
T ss_pred hhhccCCCCCEEECCCCcCChHHHHHHHHHHHccCCCCCEEECCCCcCC
Confidence 222 245666666666665433222 2222456666666666664
|
| >d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.46 E-value=1.2e-13 Score=113.09 Aligned_cols=55 Identities=22% Similarity=0.241 Sum_probs=28.9
Q ss_pred CEEeCCCCCCCCCCcchhccCCCCCCEEECcCCCCCcccchhccCCCCCCEEEccCCCC
Q 037325 116 EYLDLSMNNFTGFQVPEFIGSLKELRYLNLSGSFFSGTIPQTLGNLSNLLYLDLNNFLD 174 (598)
Q Consensus 116 ~~L~Ls~n~l~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~~ 174 (598)
|+|+|++|+++ .++ .+..+++|++|++++|+++ .+|..++.+++|++|++++|.+
T Consensus 1 R~L~Ls~n~l~--~l~-~l~~l~~L~~L~ls~N~l~-~lp~~~~~l~~L~~L~l~~N~i 55 (124)
T d1dcea3 1 RVLHLAHKDLT--VLC-HLEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNAL 55 (124)
T ss_dssp SEEECTTSCCS--SCC-CGGGGTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCC
T ss_pred CEEEcCCCCCC--CCc-ccccCCCCCEEECCCCccC-cchhhhhhhhcccccccccccc
Confidence 34555555555 233 2455555555555555555 4454555555555555555443
|
| >d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.45 E-value=4e-13 Score=109.89 Aligned_cols=115 Identities=26% Similarity=0.271 Sum_probs=90.5
Q ss_pred CCcceecCccccCCCCCCEEeCCCCCCCCCCcchhccCCCCCCEEECcCCCCCcccchhccCCCCCCEEEccCCCCCCCc
Q 037325 99 HELGGEISPSLLQLKDLEYLDLSMNNFTGFQVPEFIGSLKELRYLNLSGSFFSGTIPQTLGNLSNLLYLDLNNFLDQSNQ 178 (598)
Q Consensus 99 ~~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~~~~~~ 178 (598)
++++. ++ .+.++++|++|++++|.++ .+|..+..+++|++|++++|.++ .+| .++.+++|++|++++|.+....
T Consensus 8 n~l~~-l~-~l~~l~~L~~L~ls~N~l~--~lp~~~~~l~~L~~L~l~~N~i~-~l~-~~~~l~~L~~L~l~~N~i~~~~ 81 (124)
T d1dcea3 8 KDLTV-LC-HLEQLLLVTHLDLSHNRLR--ALPPALAALRCLEVLQASDNALE-NVD-GVANLPRLQELLLCNNRLQQSA 81 (124)
T ss_dssp SCCSS-CC-CGGGGTTCCEEECCSSCCC--CCCGGGGGCTTCCEEECCSSCCC-CCG-GGTTCSSCCEEECCSSCCCSSS
T ss_pred CCCCC-Cc-ccccCCCCCEEECCCCccC--cchhhhhhhhccccccccccccc-ccC-ccccccccCeEECCCCccCCCC
Confidence 77763 33 5899999999999999998 57888899999999999999998 555 4899999999999998875433
Q ss_pred cChhhhcCCCCCcEEEcCCCCCCCCcccchHhhhcCCCCCEE
Q 037325 179 IDLEWLSGLSSLVYFNLGGADLSKAGAYWLEVFNKLHSFVEL 220 (598)
Q Consensus 179 ~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~l~~L~~L 220 (598)
. ...+..+++|+++++++|++.............+|+|+.+
T Consensus 82 ~-~~~l~~~~~L~~L~l~~N~i~~~~~~~~~l~~~lp~L~~L 122 (124)
T d1dcea3 82 A-IQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSI 122 (124)
T ss_dssp T-TGGGGGCTTCCEEECTTSGGGGSSSCTTHHHHHCTTCSEE
T ss_pred C-chhhcCCCCCCEEECCCCcCCcCccHHHHHHHHCcCcceE
Confidence 2 2457788889999999988876543334455556666654
|
| >d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: U2A'-like domain: Splicesomal U2A' protein species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.43 E-value=1.3e-13 Score=118.81 Aligned_cols=63 Identities=16% Similarity=0.091 Sum_probs=43.1
Q ss_pred cccCCCCCCEEeCCCCCCCCCCcchhccCCCCCCEEECcCCCCCcccchhccCCCCCCEEEccCCCC
Q 037325 108 SLLQLKDLEYLDLSMNNFTGFQVPEFIGSLKELRYLNLSGSFFSGTIPQTLGNLSNLLYLDLNNFLD 174 (598)
Q Consensus 108 ~l~~l~~L~~L~Ls~n~l~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~~ 174 (598)
.+.++.++++|+|++|+|+ .++..+..+++|++|++++|.++ .++ .+..+++|++|++++|.+
T Consensus 13 ~~~n~~~lr~L~L~~n~I~--~i~~~~~~l~~L~~L~Ls~N~i~-~l~-~~~~l~~L~~L~ls~N~i 75 (162)
T d1a9na_ 13 QYTNAVRDRELDLRGYKIP--VIENLGATLDQFDAIDFSDNEIR-KLD-GFPLLRRLKTLLVNNNRI 75 (162)
T ss_dssp EEECTTSCEEEECTTSCCC--SCCCGGGGTTCCSEEECCSSCCC-EEC-CCCCCSSCCEEECCSSCC
T ss_pred hccCcCcCcEEECCCCCCC--ccCccccccccCCEEECCCCCCC-ccC-CcccCcchhhhhcccccc
Confidence 3556777888888888887 35665667788888888888777 443 355666666666666544
|
| >d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: U2A'-like domain: Splicesomal U2A' protein species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.43 E-value=9.5e-14 Score=119.65 Aligned_cols=130 Identities=18% Similarity=0.162 Sum_probs=97.5
Q ss_pred ccCCCCCCEEECcCCCCCcccchhccCCCCCCEEEccCCCCCCCccChhhhcCCCCCcEEEcCCCCCCCCcccchHhhhc
Q 037325 134 IGSLKELRYLNLSGSFFSGTIPQTLGNLSNLLYLDLNNFLDQSNQIDLEWLSGLSSLVYFNLGGADLSKAGAYWLEVFNK 213 (598)
Q Consensus 134 ~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~ 213 (598)
+.+..+|++|+|++|+|+ .++..+..+++|++|++++|.+... ..+..+++|++|++++|.+.... +..+..
T Consensus 14 ~~n~~~lr~L~L~~n~I~-~i~~~~~~l~~L~~L~Ls~N~i~~l----~~~~~l~~L~~L~ls~N~i~~l~---~~~~~~ 85 (162)
T d1a9na_ 14 YTNAVRDRELDLRGYKIP-VIENLGATLDQFDAIDFSDNEIRKL----DGFPLLRRLKTLLVNNNRICRIG---EGLDQA 85 (162)
T ss_dssp EECTTSCEEEECTTSCCC-SCCCGGGGTTCCSEEECCSSCCCEE----CCCCCCSSCCEEECCSSCCCEEC---SCHHHH
T ss_pred ccCcCcCcEEECCCCCCC-ccCccccccccCCEEECCCCCCCcc----CCcccCcchhhhhcccccccCCC---cccccc
Confidence 356678888888888887 5676667788888888888876532 23677888888888888887765 345667
Q ss_pred CCCCCEEEcCCCCCCCCCCCCCcCCCCCccEEEccCCCCCCCc---chhhhcCCCCCEEEc
Q 037325 214 LHSFVELHLPNCNLPSLPLSFPSLNFASLQVLDLSNNDFNSTT---PHWLFNITSLLCLDL 271 (598)
Q Consensus 214 l~~L~~L~l~~~~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~---~~~l~~l~~L~~L~l 271 (598)
+++|++|++++|.++..+....+..+++|++|++++|.++... +..+..+++|++||-
T Consensus 86 l~~L~~L~L~~N~i~~~~~l~~l~~l~~L~~L~l~~N~i~~~~~~r~~~i~~lp~L~~LD~ 146 (162)
T d1a9na_ 86 LPDLTELILTNNSLVELGDLDPLASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLDF 146 (162)
T ss_dssp CTTCCEEECCSCCCCCGGGGGGGGGCTTCCEEECCSSGGGGSTTHHHHHHHHCTTCSEETT
T ss_pred ccccccceeccccccccccccccccccccchhhcCCCccccccchHHHHHHHCCCcCeeCC
Confidence 8888888888888887755455677888888888888876432 235778888888864
|
| >d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: Outer arm dynein light chain 1 family: Outer arm dynein light chain 1 domain: Outer arm dynein light chain 1 species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]
Probab=99.14 E-value=2.9e-13 Score=120.84 Aligned_cols=41 Identities=29% Similarity=0.440 Sum_probs=18.7
Q ss_pred cccCCCCCCEEeCCCCCCCCCCcchhccCCCCCCEEECcCCCCC
Q 037325 108 SLLQLKDLEYLDLSMNNFTGFQVPEFIGSLKELRYLNLSGSFFS 151 (598)
Q Consensus 108 ~l~~l~~L~~L~Ls~n~l~~~~~p~~~~~l~~L~~L~L~~n~l~ 151 (598)
++..+++|++|+|++|+++. ++ .+..+++|++|++++|.++
T Consensus 43 sl~~L~~L~~L~Ls~n~I~~--i~-~l~~l~~L~~L~Ls~N~i~ 83 (198)
T d1m9la_ 43 TLSTLKACKHLALSTNNIEK--IS-SLSGMENLRILSLGRNLIK 83 (198)
T ss_dssp HHHHTTTCCEEECSEEEESC--CC-CHHHHTTCCEEECCEEEEC
T ss_pred HHhcccccceeECcccCCCC--cc-cccCCccccChhhcccccc
Confidence 34444455555555544442 22 2344444555555544444
|
| >d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: Outer arm dynein light chain 1 family: Outer arm dynein light chain 1 domain: Outer arm dynein light chain 1 species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]
Probab=99.11 E-value=9.1e-13 Score=117.57 Aligned_cols=41 Identities=27% Similarity=0.344 Sum_probs=21.6
Q ss_pred cchhccCCCCCCEEECcCCCCCcccchhccCCCCCCEEEccCC
Q 037325 130 VPEFIGSLKELRYLNLSGSFFSGTIPQTLGNLSNLLYLDLNNF 172 (598)
Q Consensus 130 ~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n 172 (598)
++..+..+++|++|++++|+++ .++ .+..+++|++|++++|
T Consensus 40 l~~sl~~L~~L~~L~Ls~n~I~-~i~-~l~~l~~L~~L~Ls~N 80 (198)
T d1m9la_ 40 MDATLSTLKACKHLALSTNNIE-KIS-SLSGMENLRILSLGRN 80 (198)
T ss_dssp CHHHHHHTTTCCEEECSEEEES-CCC-CHHHHTTCCEEECCEE
T ss_pred hhhHHhcccccceeECcccCCC-Ccc-cccCCccccChhhccc
Confidence 4555555666666666666555 333 2444455555555444
|
| >d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: High affinity nerve growth factor receptor, N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.07 E-value=4.5e-10 Score=95.42 Aligned_cols=86 Identities=28% Similarity=0.255 Sum_probs=58.0
Q ss_pred CcCCcEEEccCCc-ccccCCchhhcccCCCCCccccCCCCeEeCcCCccccccchhccCCCCCCEEECCCCcCccccchh
Q 037325 487 SFNVTKLYLRDNS-FSGLIPNDIGQNLPFLTDLGNLKQLITLVISNNNLSGEIPLLFSNISFLYILDMSNNSLSGSTPES 565 (598)
Q Consensus 487 ~~~L~~L~ls~n~-l~~~~p~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~ 565 (598)
+++|++|++++|+ ++..-+..|.. +++|+.|+|++|+|+...|..|..+++|++|+|++|+++ .+|..
T Consensus 30 l~~l~~L~l~~n~~l~~i~~~~f~~----------l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~Ls~N~l~-~l~~~ 98 (156)
T d2ifga3 30 AENLTELYIENQQHLQHLELRDLRG----------LGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNALE-SLSWK 98 (156)
T ss_dssp CSCCSEEECCSCSSCCEECGGGSCS----------CCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSSCCS-CCCST
T ss_pred ccccCeeecCCCccccccCchhhcc----------ccccCcceeeccccCCcccccccccccccceeccCCCCc-ccChh
Confidence 3567777776554 66333334444 777888888888887655677777888888888888887 45544
Q ss_pred ccCCCCCCEEEccCCCCc
Q 037325 566 IGSLRTVKFLVLRNNYLS 583 (598)
Q Consensus 566 l~~l~~L~~L~l~~n~l~ 583 (598)
.....+|+.|++++|++.
T Consensus 99 ~~~~~~l~~L~L~~Np~~ 116 (156)
T d2ifga3 99 TVQGLSLQELVLSGNPLH 116 (156)
T ss_dssp TTCSCCCCEEECCSSCCC
T ss_pred hhccccccccccCCCccc
Confidence 444446788888888763
|
| >d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: High affinity nerve growth factor receptor, N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.03 E-value=3.2e-10 Score=96.40 Aligned_cols=89 Identities=26% Similarity=0.254 Sum_probs=46.2
Q ss_pred hhhcCCCCCEEEcCCC-CCCCCCCCCCcCCCCCccEEEccCCCCCCCcchhhhcCCCCCEEEccCCcccccCCccccCCC
Q 037325 210 VFNKLHSFVELHLPNC-NLPSLPLSFPSLNFASLQVLDLSNNDFNSTTPHWLFNITSLLCLDLGSNDLQGDIPDGFASLN 288 (598)
Q Consensus 210 ~~~~l~~L~~L~l~~~-~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~ 288 (598)
.+..+++|++|++.++ .++.++. ..+..+++|+.|++++|+++...+..|..+++|++|++++|+++ .+|.......
T Consensus 26 ~l~~l~~l~~L~l~~n~~l~~i~~-~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~Ls~N~l~-~l~~~~~~~~ 103 (156)
T d2ifga3 26 HLPGAENLTELYIENQQHLQHLEL-RDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNALE-SLSWKTVQGL 103 (156)
T ss_dssp TSCSCSCCSEEECCSCSSCCEECG-GGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSSCCS-CCCSTTTCSC
T ss_pred cccCccccCeeecCCCccccccCc-hhhccccccCcceeeccccCCcccccccccccccceeccCCCCc-ccChhhhccc
Confidence 3444455555555433 2444443 34445556666666666665555555556666666666666665 2333222223
Q ss_pred CccEEECcCCCc
Q 037325 289 SLQELDLSGNSF 300 (598)
Q Consensus 289 ~L~~L~l~~n~~ 300 (598)
+|+.|++++|++
T Consensus 104 ~l~~L~L~~Np~ 115 (156)
T d2ifga3 104 SLQELVLSGNPL 115 (156)
T ss_dssp CCCEEECCSSCC
T ss_pred cccccccCCCcc
Confidence 466666666653
|
| >d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: mRNA export factor tap domain: mRNA export factor tap species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.17 E-value=9.7e-08 Score=81.25 Aligned_cols=80 Identities=23% Similarity=0.084 Sum_probs=47.4
Q ss_pred CcCCcEEEccCCcccccC--CchhhcccCCCCCccccCCCCeEeCcCCccccccchhccCCCCCCEEECCCCcCccccch
Q 037325 487 SFNVTKLYLRDNSFSGLI--PNDIGQNLPFLTDLGNLKQLITLVISNNNLSGEIPLLFSNISFLYILDMSNNSLSGSTPE 564 (598)
Q Consensus 487 ~~~L~~L~ls~n~l~~~~--p~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~ 564 (598)
+++|++|+|++|+++..- +..+.. +++|+.|+|++|.++..-+-.+.....|+.|++++|.+.+....
T Consensus 64 ~~~L~~L~Ls~N~i~~l~~~~~~~~~----------l~~L~~L~Ls~N~i~~l~~l~~l~~~~L~~L~L~~Npl~~~~~~ 133 (162)
T d1koha1 64 IPELLSLNLSNNRLYRLDDMSSIVQK----------APNLKILNLSGNELKSERELDKIKGLKLEELWLDGNSLSDTFRD 133 (162)
T ss_dssp CTTCCCCCCCSSCCCCCSGGGTHHHH----------STTCCCCCCTTSCCCCGGGHHHHTTCCCSSCCCTTSTTSSSSSS
T ss_pred CCCCCEeeCCCccccCCchhHHHHhh----------CCcccccccccCccccchhhhhhhccccceeecCCCCcCcCccc
Confidence 567777777777776421 222333 67777777777777733332334445677777777777654332
Q ss_pred -------hccCCCCCCEEE
Q 037325 565 -------SIGSLRTVKFLV 576 (598)
Q Consensus 565 -------~l~~l~~L~~L~ 576 (598)
.+..+++|+.||
T Consensus 134 ~~~y~~~i~~~~P~L~~LD 152 (162)
T d1koha1 134 QSTYISAIRERFPKLLRLD 152 (162)
T ss_dssp HHHHHHHHHTTSTTCCEET
T ss_pred chhHHHHHHHHCCCCCEEC
Confidence 245567777665
|
| >d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: mRNA export factor tap domain: mRNA export factor tap species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.01 E-value=1.3e-06 Score=74.10 Aligned_cols=67 Identities=25% Similarity=0.253 Sum_probs=46.6
Q ss_pred cCCCCeEeCcCCccccc--cchhccCCCCCCEEECCCCcCccccchhccCCCCCCEEEccCCCCcccCC
Q 037325 521 LKQLITLVISNNNLSGE--IPLLFSNISFLYILDMSNNSLSGSTPESIGSLRTVKFLVLRNNYLSGKLP 587 (598)
Q Consensus 521 l~~L~~L~Ls~N~l~~~--~p~~~~~l~~L~~L~ls~N~l~~~~p~~l~~l~~L~~L~l~~n~l~g~~P 587 (598)
+++|++|+|++|+++.. ++..+..+++|+.|++++|+++..-+-.......|+.+++++|++++...
T Consensus 64 ~~~L~~L~Ls~N~i~~l~~~~~~~~~l~~L~~L~Ls~N~i~~l~~l~~l~~~~L~~L~L~~Npl~~~~~ 132 (162)
T d1koha1 64 IPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLKLEELWLDGNSLSDTFR 132 (162)
T ss_dssp CTTCCCCCCCSSCCCCCSGGGTHHHHSTTCCCCCCTTSCCCCGGGHHHHTTCCCSSCCCTTSTTSSSSS
T ss_pred CCCCCEeeCCCccccCCchhHHHHhhCCcccccccccCccccchhhhhhhccccceeecCCCCcCcCcc
Confidence 67888888888888743 34556678888888888888874333233344567888888888876544
|
| >d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: 28-residue LRR domain: Tropomodulin C-terminal domain species: nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=97.94 E-value=4.4e-06 Score=71.05 Aligned_cols=92 Identities=12% Similarity=0.066 Sum_probs=46.0
Q ss_pred cCCCCCCCEEEccCCcCCcc----chhhccCCCCCCEEeCcCCcCCcccCCCchhhhcCCCCCCEEEccCccCcccc---
Q 037325 363 LGSLKNLRHLVLWQNSFLGS----IPPSIGNLTLLKELYLASNQMNGQKISDSYQHLKNQTELRTLVLNKARISDTI--- 435 (598)
Q Consensus 363 l~~l~~L~~L~ls~n~l~~~----~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~--- 435 (598)
+...+.|+.|++++|.+... +...+...+.|++|++++|.++..........+...+.|++|++++|++....
T Consensus 40 L~~n~~L~~L~Ls~n~l~~~~~~~la~~L~~n~~L~~L~L~~n~i~~~g~~~l~~aL~~n~sL~~L~l~~n~~~~~g~~~ 119 (167)
T d1pgva_ 40 ACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARLLRSTLVTQSIVEFKADNQRQSVLGNQV 119 (167)
T ss_dssp HTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHHHHHTTTTCCCSEEECCCCSSCCCCHHH
T ss_pred HhhCCccceeeccccccchhHHHHHhhhhhhcccccceeeehhhcchHHHHHHHHHHHhCCcCCEEECCCCcCCCccHHH
Confidence 34445555555555555432 22233445566666666666654433333344555666666666666543221
Q ss_pred ----chHHHhcCCCCCEEEccCCc
Q 037325 436 ----SDWFWQLSLTLDELDVAYNE 455 (598)
Q Consensus 436 ----~~~~~~~~~~L~~L~ls~n~ 455 (598)
...+.. .+.|+.|+++++.
T Consensus 120 ~~~l~~~L~~-n~sL~~l~l~~~~ 142 (167)
T d1pgva_ 120 EMDMMMAIEE-NESLLRVGISFAS 142 (167)
T ss_dssp HHHHHHHHHH-CSSCCEEECCCCC
T ss_pred HHHHHHHHHh-CCCccEeeCcCCC
Confidence 112222 4566666665543
|
| >d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: 28-residue LRR domain: Tropomodulin C-terminal domain species: nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=97.87 E-value=9.7e-06 Score=68.82 Aligned_cols=115 Identities=13% Similarity=0.094 Sum_probs=62.5
Q ss_pred cCCCCCCEEeCCCC-CCCCCC---cchhccCCCCCCEEECcCCCCCcc----cchhccCCCCCCEEEccCCCCCCCc--c
Q 037325 110 LQLKDLEYLDLSMN-NFTGFQ---VPEFIGSLKELRYLNLSGSFFSGT----IPQTLGNLSNLLYLDLNNFLDQSNQ--I 179 (598)
Q Consensus 110 ~~l~~L~~L~Ls~n-~l~~~~---~p~~~~~l~~L~~L~L~~n~l~~~----~p~~l~~l~~L~~L~L~~n~~~~~~--~ 179 (598)
.+.+.|++|+|+++ .+.... +-..+...+.|++|++++|.+... +...+...+.|++|++++|.+.... .
T Consensus 12 ~n~~~L~~L~L~~~~~i~~~~~~~l~~~L~~n~~L~~L~Ls~n~l~~~~~~~la~~L~~n~~L~~L~L~~n~i~~~g~~~ 91 (167)
T d1pgva_ 12 EDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLAR 91 (167)
T ss_dssp TTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHH
T ss_pred hCCCCCcEEEeCCCCCCCHHHHHHHHHHHhhCCccceeeccccccchhHHHHHhhhhhhcccccceeeehhhcchHHHHH
Confidence 34577888888764 344321 223455667788888887777632 2233445666777777776553221 1
Q ss_pred ChhhhcCCCCCcEEEcCCCCCCCCcc----cchHhhhcCCCCCEEEcCC
Q 037325 180 DLEWLSGLSSLVYFNLGGADLSKAGA----YWLEVFNKLHSFVELHLPN 224 (598)
Q Consensus 180 ~~~~~~~l~~L~~L~l~~n~~~~~~~----~~~~~~~~l~~L~~L~l~~ 224 (598)
....+...+.|++|++++|.+..... .+...+...+.|++|+++.
T Consensus 92 l~~aL~~n~sL~~L~l~~n~~~~~g~~~~~~l~~~L~~n~sL~~l~l~~ 140 (167)
T d1pgva_ 92 LLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISF 140 (167)
T ss_dssp HHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCC
T ss_pred HHHHHHhCCcCCEEECCCCcCCCccHHHHHHHHHHHHhCCCccEeeCcC
Confidence 22345566666666666665443321 1233444445555555443
|
| >d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: 28-residue LRR domain: Tropomodulin C-terminal domain species: Chicken (Gallus gallus) [TaxId: 9031]
Probab=97.43 E-value=4.1e-05 Score=64.75 Aligned_cols=90 Identities=14% Similarity=0.157 Sum_probs=38.2
Q ss_pred CCCCCCEEEccCCcCCcc----chhhccCCCCCCEEeCcCCcCCcccCCCchhhhcCCCCCCEEEc--cCccCccccchH
Q 037325 365 SLKNLRHLVLWQNSFLGS----IPPSIGNLTLLKELYLASNQMNGQKISDSYQHLKNQTELRTLVL--NKARISDTISDW 438 (598)
Q Consensus 365 ~l~~L~~L~ls~n~l~~~----~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~~~~L~~L~l--~~n~l~~~~~~~ 438 (598)
..+.|++|++++|.+... +...+...+.++.+++++|.+...........+...+.|+.++| ++|.+++.....
T Consensus 44 ~n~~L~~L~Ls~n~l~~~~~~~L~~~l~~~~~l~~l~l~~~~~~~~g~~~l~~~l~~~~~L~~l~L~l~~n~i~~~~~~~ 123 (166)
T d1io0a_ 44 TNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILALVEALQSNTSLIELRIDNQSQPLGNNVEME 123 (166)
T ss_dssp TCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHH
T ss_pred cCCccCeeeccCCcccHHHHHHHHHHHhhcccchhhhhccccccchhHHHHHHHHHhCccccEEeeccCCCcCcHHHHHH
Confidence 344444555555444332 11223344555555555555543332222334445555554433 234444322222
Q ss_pred HH---hcCCCCCEEEccCC
Q 037325 439 FW---QLSLTLDELDVAYN 454 (598)
Q Consensus 439 ~~---~~~~~L~~L~ls~n 454 (598)
+. ...+.|+.|+++.+
T Consensus 124 La~~L~~n~~L~~L~l~~~ 142 (166)
T d1io0a_ 124 IANMLEKNTTLLKFGYHFT 142 (166)
T ss_dssp HHHHHHHCSSCCEEECCCS
T ss_pred HHHHHHhCCCcCEEeCcCC
Confidence 11 12455555555544
|
| >d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: 28-residue LRR domain: Tropomodulin C-terminal domain species: Chicken (Gallus gallus) [TaxId: 9031]
Probab=97.41 E-value=3.2e-05 Score=65.50 Aligned_cols=48 Identities=19% Similarity=0.236 Sum_probs=23.3
Q ss_pred cCCCCCCEEeCcC-CcCCcccCCCchhhhcCCCCCCEEEccCccCcccc
Q 037325 388 GNLTLLKELYLAS-NQMNGQKISDSYQHLKNQTELRTLVLNKARISDTI 435 (598)
Q Consensus 388 ~~l~~L~~L~l~~-n~l~~~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~ 435 (598)
.+.++|++|++++ +.++..........+...+.|++|++++|.++...
T Consensus 14 ~~~~~L~~L~L~~~~~i~~~~~~~l~~al~~n~~L~~L~Ls~n~l~~~~ 62 (166)
T d1io0a_ 14 NNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPV 62 (166)
T ss_dssp TTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHH
T ss_pred hcCCCCcEEEcCCCCCCCHHHHHHHHHHHhcCCccCeeeccCCcccHHH
Confidence 3445666666655 33443322222334445555666666666555443
|