Citrus Sinensis ID: 037333
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
Close Homologs for Annotation Transfer
Close Homologs in the Non-Redundant Database Detected by BLAST 
Original result of BLAST against Nonredundant Database
GI ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 158 | ||||||
| 224113153 | 785 | predicted protein [Populus trichocarpa] | 0.987 | 0.198 | 0.707 | 3e-59 | |
| 224113157 | 786 | predicted protein [Populus trichocarpa] | 0.987 | 0.198 | 0.700 | 1e-58 | |
| 224113149 | 820 | predicted protein [Populus trichocarpa] | 0.987 | 0.190 | 0.718 | 2e-58 | |
| 224126243 | 836 | predicted protein [Populus trichocarpa] | 0.987 | 0.186 | 0.712 | 6e-58 | |
| 224124250 | 820 | predicted protein [Populus trichocarpa] | 0.987 | 0.190 | 0.706 | 5e-57 | |
| 224151394 | 439 | predicted protein [Populus trichocarpa] | 0.987 | 0.355 | 0.706 | 8e-57 | |
| 356514935 | 834 | PREDICTED: G-type lectin S-receptor-like | 0.974 | 0.184 | 0.694 | 2e-56 | |
| 356514933 | 828 | PREDICTED: G-type lectin S-receptor-like | 0.974 | 0.185 | 0.713 | 4e-56 | |
| 224122938 | 371 | predicted protein [Populus trichocarpa] | 0.949 | 0.404 | 0.697 | 5e-55 | |
| 356514931 | 818 | PREDICTED: G-type lectin S-receptor-like | 0.974 | 0.188 | 0.700 | 9e-55 |
| >gi|224113153|ref|XP_002332643.1| predicted protein [Populus trichocarpa] gi|222832838|gb|EEE71315.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 233 bits (593), Expect = 3e-59, Method: Compositional matrix adjust.
Identities = 111/157 (70%), Positives = 134/157 (85%), Gaps = 1/157 (0%)
Query: 1 SLSDGRTLVSKEGSFELGFFSPGSSKNRYVGIWYENMPVKTVVWVANRINPINDSSGLLV 60
SLSDG+TLVS+EGSFELGFFSPG SKNRY+GIWY+N+P++TV+WVANR NPI DSSGLL
Sbjct: 41 SLSDGKTLVSREGSFELGFFSPGISKNRYLGIWYKNIPLRTVLWVANRRNPIEDSSGLLT 100
Query: 61 VNETGNLVLTSQNKSVVWSANLSKEVQTPVVLQLLDSGNLVLRGERDGGSETYLWQSFDY 120
++ T NL+L S VVWS+N + ++P+VLQLLDSGNLVLR E+ S YLWQSFD+
Sbjct: 101 IDNTANLLLVSNRNVVVWSSNSTIVAKSPIVLQLLDSGNLVLRDEK-SDSGRYLWQSFDH 159
Query: 121 PSDTLLPGMKLGWDFKTGLERRITSWKSSDDPSPGDF 157
PSDTL+PGMKLGWD +TGLERR++SW+SSDDPSPGD
Sbjct: 160 PSDTLIPGMKLGWDLRTGLERRLSSWRSSDDPSPGDL 196
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224113157|ref|XP_002332644.1| predicted protein [Populus trichocarpa] gi|222832839|gb|EEE71316.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
| >gi|224113149|ref|XP_002332642.1| predicted protein [Populus trichocarpa] gi|222832837|gb|EEE71314.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
| >gi|224126243|ref|XP_002319790.1| predicted protein [Populus trichocarpa] gi|222858166|gb|EEE95713.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
| >gi|224124250|ref|XP_002319283.1| predicted protein [Populus trichocarpa] gi|222857659|gb|EEE95206.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
| >gi|224151394|ref|XP_002337099.1| predicted protein [Populus trichocarpa] gi|222838019|gb|EEE76384.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
| >gi|356514935|ref|XP_003526157.1| PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase At4g27290-like [Glycine max] | Back alignment and taxonomy information |
|---|
| >gi|356514933|ref|XP_003526156.1| PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase At4g27290-like [Glycine max] | Back alignment and taxonomy information |
|---|
| >gi|224122938|ref|XP_002330401.1| predicted protein [Populus trichocarpa] gi|222871786|gb|EEF08917.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
| >gi|356514931|ref|XP_003526155.1| PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase At4g27290-like [Glycine max] | Back alignment and taxonomy information |
|---|
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST 
Original result of BLAST against Gene Ontology (AMIGO)
ID ![]() |
Alignment graph ![]() |
Length ![]() |
Definition ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 158 | ||||||
| TAIR|locus:2131684 | 783 | AT4G27290 [Arabidopsis thalian | 0.974 | 0.196 | 0.518 | 5.9e-41 | |
| TAIR|locus:2141181 | 850 | RK3 "receptor kinase 3" [Arabi | 0.987 | 0.183 | 0.518 | 7.6e-40 | |
| TAIR|locus:2018506 | 847 | RK2 "receptor kinase 2" [Arabi | 0.987 | 0.184 | 0.490 | 7.1e-39 | |
| TAIR|locus:2018546 | 843 | RK1 "receptor kinase 1" [Arabi | 0.962 | 0.180 | 0.5 | 6.5e-38 | |
| TAIR|locus:2088619 | 439 | AT3G12000 [Arabidopsis thalian | 0.987 | 0.355 | 0.509 | 7e-38 | |
| TAIR|locus:2200151 | 830 | SD1-13 "S-domain-1 13" [Arabid | 0.968 | 0.184 | 0.477 | 2.1e-33 | |
| TAIR|locus:2059103 | 828 | AT2G19130 [Arabidopsis thalian | 0.987 | 0.188 | 0.452 | 9.4e-33 | |
| TAIR|locus:2141176 | 849 | B120 [Arabidopsis thaliana (ta | 0.974 | 0.181 | 0.456 | 3.5e-32 | |
| TAIR|locus:2197734 | 814 | AT1G61370 [Arabidopsis thalian | 0.968 | 0.187 | 0.433 | 3.7e-31 | |
| TAIR|locus:2197709 | 809 | AT1G61480 [Arabidopsis thalian | 0.962 | 0.187 | 0.461 | 1.3e-30 |
| TAIR|locus:2131684 AT4G27290 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 442 (160.7 bits), Expect = 5.9e-41, P = 5.9e-41
Identities = 84/162 (51%), Positives = 115/162 (70%)
Query: 1 SLSDGRTLVSKEGSFELGFFSPGSSKNRYVGIWYENMPVKTVVWVANRINPINDSSGLLV 60
+L DG T+VS+ GSFE+GFFSPG S+NRY+GIWY+ + ++TVVWVANR +P+ D SG L
Sbjct: 32 TLKDGDTIVSQGGSFEVGFFSPGGSRNRYLGIWYKKISLQTVVWVANRDSPLYDLSGTLK 91
Query: 61 VNETGNLVLTSQNKSVVWSANLSKEVQ-----TPVVLQLLDSGNLVLRGERDGGSETYLW 115
V+E G+L L + ++WS++ S Q P+V Q+LD+GNLV+R G + Y+W
Sbjct: 92 VSENGSLCLFNDRNHIIWSSSSSPSSQKASLRNPIV-QILDTGNLVVRNS--GDDQDYIW 148
Query: 116 QSFDYPSDTLLPGMKLGWDFKTGLERRITSWKSSDDPSPGDF 157
QS DYP D LPGMK G +F TGL R +TSW++ DDPS G++
Sbjct: 149 QSLDYPGDMFLPGMKYGLNFVTGLNRFLTSWRAIDDPSTGNY 190
|
|
| TAIR|locus:2141181 RK3 "receptor kinase 3" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
| TAIR|locus:2018506 RK2 "receptor kinase 2" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
| TAIR|locus:2018546 RK1 "receptor kinase 1" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
| TAIR|locus:2088619 AT3G12000 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
| TAIR|locus:2200151 SD1-13 "S-domain-1 13" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
| TAIR|locus:2059103 AT2G19130 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
| TAIR|locus:2141176 B120 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
| TAIR|locus:2197734 AT1G61370 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
| TAIR|locus:2197709 AT1G61480 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Ezypred Server 
Original result from Ezypred Server
Fail to connect to Ezypred Server
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING 
Original result from the STRING server
| eugene3.02540005 | hypothetical protein (785 aa) | |||||||
(Populus trichocarpa) | ||||||||
| Sorry, there are no predicted associations at the current settings. |
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST 
Original result of RPS-BLAST against CDD database part I
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| Query | 158 | |||
| pfam01453 | 109 | pfam01453, B_lectin, D-mannose binding lectin | 1e-35 | |
| cd00028 | 116 | cd00028, B_lectin, Bulb-type mannose-specific lect | 5e-35 | |
| smart00108 | 114 | smart00108, B_lectin, Bulb-type mannose-specific l | 8e-31 |
| >gnl|CDD|216511 pfam01453, B_lectin, D-mannose binding lectin | Back alignment and domain information |
|---|
Score = 118 bits (299), Expect = 1e-35
Identities = 60/115 (52%), Positives = 72/115 (62%), Gaps = 6/115 (5%)
Query: 39 VKTVVWVANRINPINDSSGLLVVNETGNLVLTSQNKSVVWSANLSKEVQTPVVLQLLDSG 98
+TVVWVANR+NP+ DSS L++ GNLVL N VVWS+N S + V L D G
Sbjct: 1 NQTVVWVANRLNPLTDSSYTLILQSDGNLVLYDGNGRVVWSSNTS-GKGSGCVAVLQDDG 59
Query: 99 NLVLRGERDGGSETYLWQSFDYPSDTLLPGMKLGWDFKTGLERRITSWKSSDDPS 153
NLVL LWQSFD+P+DTLLPG K G + G RR+TSWKS+ DPS
Sbjct: 60 NLVLYDNSG----KVLWQSFDHPTDTLLPGQKDG-NVVIGGSRRLTSWKSNTDPS 109
|
These proteins include mannose-specific lectins from plants as well as bacteriocins from bacteria. Length = 109 |
| >gnl|CDD|237995 cd00028, B_lectin, Bulb-type mannose-specific lectin | Back alignment and domain information |
|---|
| >gnl|CDD|214519 smart00108, B_lectin, Bulb-type mannose-specific lectin | Back alignment and domain information |
|---|
Conserved Domains Detected by HHsearch 
Original result of HHsearch against CDD database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 158 | |||
| PF01453 | 114 | B_lectin: D-mannose binding lectin; InterPro: IPR0 | 99.97 | |
| cd00028 | 116 | B_lectin Bulb-type mannose-specific lectin. The do | 99.96 | |
| smart00108 | 114 | B_lectin Bulb-type mannose-specific lectin. | 99.95 | |
| PF01453 | 114 | B_lectin: D-mannose binding lectin; InterPro: IPR0 | 99.24 | |
| smart00108 | 114 | B_lectin Bulb-type mannose-specific lectin. | 98.79 | |
| cd00028 | 116 | B_lectin Bulb-type mannose-specific lectin. The do | 98.72 |
| >PF01453 B_lectin: D-mannose binding lectin; InterPro: IPR001480 A bulb lectin super-family (Amaryllidaceae, Orchidaceae and Aliaceae) contains a ~115-residue-long domain whose overall three dimensional fold is very similar to that of [, ]: Dictyostelium discoideum comitin, an actin binding protein Curculigo latifolia curculin, a sweet tasting and taste-modifying protein This domain generally binds mannose, but in at least one protein, curculin, it is apparently devoid of mannose-binding activity | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.6e-33 Score=202.12 Aligned_cols=109 Identities=51% Similarity=0.797 Sum_probs=79.6
Q ss_pred CcEEEEcCCCCCCCC--CCceEEEecCCCEEEecCCCceEEee-cCCCCC-CcceEEEeccCCCEEEecCCCCCCCeEEE
Q 037333 40 KTVVWVANRINPIND--SSGLLVVNETGNLVLTSQNKSVVWSA-NLSKEV-QTPVVLQLLDSGNLVLRGERDGGSETYLW 115 (158)
Q Consensus 40 ~~vvW~an~~~p~~~--~~~~l~l~~dG~Lvl~d~~g~~iWss-~~~~~~-~~~~~~~L~d~GNLVl~~~~~~~~~~~iW 115 (158)
+++||+|||+.|+.. ..+.|.|+.||+|+|++..++.+|++ ++.+.+ ..+.+ +|+|+|||||++. .+.+||
T Consensus 2 ~tvvW~an~~~p~~~~s~~~~L~l~~dGnLvl~~~~~~~iWss~~t~~~~~~~~~~-~L~~~GNlvl~d~----~~~~lW 76 (114)
T PF01453_consen 2 RTVVWVANRNSPLTSSSGNYTLILQSDGNLVLYDSNGSVIWSSNNTSGRGNSGCYL-VLQDDGNLVLYDS----SGNVLW 76 (114)
T ss_dssp --------TTEEEEECETTEEEEEETTSEEEEEETTTEEEEE--S-TTSS-SSEEE-EEETTSEEEEEET----TSEEEE
T ss_pred cccccccccccccccccccccceECCCCeEEEEcCCCCEEEEecccCCccccCeEE-EEeCCCCEEEEee----cceEEE
Confidence 689999999999853 24789999999999999988899999 555544 34566 9999999999997 789999
Q ss_pred EeCCCCCCccCCCcEeeccccCCCeeEEEEcCCCCCCC
Q 037333 116 QSFDYPSDTLLPGMKLGWDFKTGLERRITSWKSSDDPS 153 (158)
Q Consensus 116 qSfd~Ptdtllpgq~l~~~~~~g~~~~l~s~~s~~d~s 153 (158)
|||+||+||+||+|+|+.+..+|....++||++.+|||
T Consensus 77 ~Sf~~ptdt~L~~q~l~~~~~~~~~~~~~sw~s~~dps 114 (114)
T PF01453_consen 77 QSFDYPTDTLLPGQKLGDGNVTGKNDSLTSWSSNTDPS 114 (114)
T ss_dssp ESTTSSS-EEEEEET--TSEEEEESTSSEEEESS----
T ss_pred eecCCCccEEEeccCcccCCCccccceEEeECCCCCCC
Confidence 99999999999999999877777555799999999996
|
Each bulb-type lectin domain consists of three sequential beta-sheet subdomains (I, II, III) that are inter-related by pseudo three-fold symmetry. The three subdomains are flat four-stranded, antiparrallel beta-sheets. Together they form a 12-stranded beta-barrel in which the barrel axis coincides with the pseudo 3-fold axis.; GO: 0005529 sugar binding; PDB: 3M7H_A 3M7J_B 3MEZ_D 1DLP_A 1BWU_D 1KJ1_A 1B2P_A 1XD6_A 2DPF_C 2D04_B .... |
| >cd00028 B_lectin Bulb-type mannose-specific lectin | Back alignment and domain information |
|---|
| >smart00108 B_lectin Bulb-type mannose-specific lectin | Back alignment and domain information |
|---|
| >PF01453 B_lectin: D-mannose binding lectin; InterPro: IPR001480 A bulb lectin super-family (Amaryllidaceae, Orchidaceae and Aliaceae) contains a ~115-residue-long domain whose overall three dimensional fold is very similar to that of [, ]: Dictyostelium discoideum comitin, an actin binding protein Curculigo latifolia curculin, a sweet tasting and taste-modifying protein This domain generally binds mannose, but in at least one protein, curculin, it is apparently devoid of mannose-binding activity | Back alignment and domain information |
|---|
| >smart00108 B_lectin Bulb-type mannose-specific lectin | Back alignment and domain information |
|---|
| >cd00028 B_lectin Bulb-type mannose-specific lectin | Back alignment and domain information |
|---|
Homologous Structure Templates
Structure Templates Detected by BLAST 
Original result of BLAST against Protein Data Bank
No homologous structure with e-value below 0.005
Structure Templates Detected by RPS-BLAST 
Original result of RPS-BLAST against PDB70 database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| Query | 158 | |||
| 1kj1_A | 109 | Lectin I, lecgna 1; BULB lectin, mannose, plant pr | 1e-08 | |
| 2dpf_A | 115 | Curculin; sweet taste, taste modifying, plant prot | 1e-07 | |
| 3a0c_A | 110 | Mannose/sialic acid-binding lectin; beta-prism II, | 3e-07 | |
| 1xd5_A | 112 | Gastrodianin-1, antifungal protein GAFP-1; monocot | 2e-06 | |
| 1b2p_A | 119 | Protein (lectin); mannose-binding lectin, monocot, | 2e-06 | |
| 3dzw_A | 109 | Agglutinin; lectin, mannobiose, mannose-alpha1, 3- | 1e-05 | |
| 3r0e_A | 109 | Lectin; carbohydrate binding, carbohydrate, sugar | 4e-05 | |
| 3r0e_B | 110 | Lectin; carbohydrate binding, carbohydrate, sugar | 1e-04 | |
| 3mez_B | 113 | Mannose-specific lectin 3 chain 2; heterotetramer, | 2e-04 |
| >1kj1_A Lectin I, lecgna 1; BULB lectin, mannose, plant protein; HET: MAN; 2.20A {Allium sativum} SCOP: b.78.1.1 PDB: 1bwu_P* 1kj1_D* 1bwu_Q* 1bwu_A* 1bwu_D* Length = 109 | Back alignment and structure |
|---|
Score = 49.1 bits (117), Expect = 1e-08
Identities = 22/120 (18%), Positives = 43/120 (35%), Gaps = 20/120 (16%)
Query: 1 SLSDGRTLVSKEGSFELGFFSPGSSKNRYVGIWYENMPVKTVVWVANRINPINDSSGLLV 60
L G++L + + + Y++ T VW +N V
Sbjct: 9 GLYAGQSLDV--EPYHFIMQEDCNL------VLYDH---STSVWASNTGILGKKGC-KAV 56
Query: 61 VNETGNLVLTSQNKSVVWSANLSKEVQTPVVLQLLDSGNLVLRGERDGGSETYLWQSFDY 120
+ GN V+ +W+++ + VL L + GN+V+ G + +W + Y
Sbjct: 57 LQSDGNFVVYDAEGRSLWASHSVRG-NGNYVLVLQEDGNVVIYG-------SDIWSTGTY 108
|
| >2dpf_A Curculin; sweet taste, taste modifying, plant protein; 1.50A {Curculigo latifolia} PDB: 2d04_B* 2d04_A* Length = 115 | Back alignment and structure |
|---|
| >3a0c_A Mannose/sialic acid-binding lectin; beta-prism II, sugar binding protein; 2.00A {Polygonatum cyrtonema} PDB: 3a0d_A* 3a0e_A* Length = 110 | Back alignment and structure |
|---|
| >1xd5_A Gastrodianin-1, antifungal protein GAFP-1; monocot mannose binding lectin, monomer, homogeneous beta- sheet; 2.00A {Gastrodia elata} SCOP: b.78.1.1 PDB: 1xd6_A Length = 112 | Back alignment and structure |
|---|
| >1b2p_A Protein (lectin); mannose-binding lectin, monocot, aglutinin, bluebell bulbs, carbohydrate interactions, sugar binding protein; 1.70A {Hyacinthoides hispanica} SCOP: b.78.1.1 Length = 119 | Back alignment and structure |
|---|
| >3dzw_A Agglutinin; lectin, mannobiose, mannose-alpha1, 3-mannose, D sugar binding protein; HET: MAN; 1.70A {Narcissus pseudonarcissus} PDB: 1npl_A* 1jpc_A* 1msa_A* 1niv_A* Length = 109 | Back alignment and structure |
|---|
| >3r0e_A Lectin; carbohydrate binding, carbohydrate, sugar binding protein; 2.40A {Remusatia vivipara} Length = 109 | Back alignment and structure |
|---|
| >3r0e_B Lectin; carbohydrate binding, carbohydrate, sugar binding protein; 2.40A {Remusatia vivipara} Length = 110 | Back alignment and structure |
|---|
| >3mez_B Mannose-specific lectin 3 chain 2; heterotetramer, sugar binding protein; 1.94A {Crocus vernus} Length = 113 | Back alignment and structure |
|---|
Structure Templates Detected by HHsearch 
Original result of HHsearch against PDB70 database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 158 | |||
| 3m7h_A | 276 | Putidacin L1; monocot mannose-binding lectin, bact | 100.0 | |
| 1dlp_A | 236 | Lectin scafet precursor; two-domain lectin, beta p | 99.96 | |
| 4h3o_A | 105 | Lectin; cadmium, plant protein; 2.17A {Allium sati | 99.91 | |
| 3a0c_A | 110 | Mannose/sialic acid-binding lectin; beta-prism II, | 99.88 | |
| 1b2p_A | 119 | Protein (lectin); mannose-binding lectin, monocot, | 99.87 | |
| 1xd5_A | 112 | Gastrodianin-1, antifungal protein GAFP-1; monocot | 99.85 | |
| 2dpf_A | 115 | Curculin; sweet taste, taste modifying, plant prot | 99.85 | |
| 3dzw_A | 109 | Agglutinin; lectin, mannobiose, mannose-alpha1, 3- | 99.83 | |
| 3mez_B | 113 | Mannose-specific lectin 3 chain 2; heterotetramer, | 99.79 | |
| 3r0e_B | 110 | Lectin; carbohydrate binding, carbohydrate, sugar | 99.78 | |
| 3r0e_A | 109 | Lectin; carbohydrate binding, carbohydrate, sugar | 99.73 | |
| 3mez_A | 111 | Mannose-specific lectin 3 chain 1; heterotetramer, | 99.7 | |
| 3a0c_A | 110 | Mannose/sialic acid-binding lectin; beta-prism II, | 99.56 | |
| 1b2p_A | 119 | Protein (lectin); mannose-binding lectin, monocot, | 99.5 | |
| 1xd5_A | 112 | Gastrodianin-1, antifungal protein GAFP-1; monocot | 99.47 | |
| 2dpf_A | 115 | Curculin; sweet taste, taste modifying, plant prot | 99.46 | |
| 3mez_B | 113 | Mannose-specific lectin 3 chain 2; heterotetramer, | 99.42 | |
| 3m7h_A | 276 | Putidacin L1; monocot mannose-binding lectin, bact | 99.42 | |
| 3dzw_A | 109 | Agglutinin; lectin, mannobiose, mannose-alpha1, 3- | 99.32 | |
| 3mez_A | 111 | Mannose-specific lectin 3 chain 1; heterotetramer, | 99.28 | |
| 3r0e_B | 110 | Lectin; carbohydrate binding, carbohydrate, sugar | 99.28 | |
| 4h3o_A | 105 | Lectin; cadmium, plant protein; 2.17A {Allium sati | 99.27 | |
| 3r0e_A | 109 | Lectin; carbohydrate binding, carbohydrate, sugar | 99.17 | |
| 1dlp_A | 236 | Lectin scafet precursor; two-domain lectin, beta p | 98.75 |
| >3m7h_A Putidacin L1; monocot mannose-binding lectin, bacteriocin, LLPA, pseudomon bacterial toxin, siras, antimicrobial protein; 2.20A {Pseudomonas SP} PDB: 3m7j_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=4.5e-35 Score=239.26 Aligned_cols=135 Identities=24% Similarity=0.306 Sum_probs=113.0
Q ss_pred CCCCCCeEEeCCCeEEEEEEcCCCCCceEEEEEEecCCCCcEEEEcCCCCCCCCC----CceEEEecCCCEEE--ecCCC
Q 037333 1 SLSDGRTLVSKEGSFELGFFSPGSSKNRYVGIWYENMPVKTVVWVANRINPINDS----SGLLVVNETGNLVL--TSQNK 74 (158)
Q Consensus 1 ~L~~~~~L~S~ng~F~lgF~~~~~~~~~~l~i~~~~~~~~~vvW~an~~~p~~~~----~~~l~l~~dG~Lvl--~d~~g 74 (158)
+|.+|++|+|++|.|+||||+++ +.|+ |+ +.+ +||+|||+.|+.+. +++|+|+.||+||| .|..+
T Consensus 22 ~l~~~~~l~S~~g~F~lgf~~~~---~~~l---y~--~~~-vvW~Anr~~p~~~~~~~~~~~l~l~~~G~Lvl~~~~~~~ 92 (276)
T 3m7h_A 22 TLSAGQYLLSPNQRFKLLLQGDG---NLVI---QD--NGA-TVWVANEQQPFSSTIPLRNKKAPLAFYVQYGAFLDDYSR 92 (276)
T ss_dssp EBCTTCEEECTTSSEEEEECTTS---CEEE---EE--TTE-EEEECSTTSTTEEEEECCCTTCCSEEEESSSEEEEEGGG
T ss_pred EecCCCEEEcCCCcEEEEEECCC---CeEE---EC--CCC-eEEECCCCCCcCCcccccceEEEEeCCCcEEEEEeCCCC
Confidence 47789999999999999999654 3555 66 556 99999999998764 78899999999999 67778
Q ss_pred ceEEeecCCCC-----CCcceEEEeccCCCEEEecCCCCCCCeEEEEeCCCCCCccCCCcEeeccccCCCeeEEEEcCCC
Q 037333 75 SVVWSANLSKE-----VQTPVVLQLLDSGNLVLRGERDGGSETYLWQSFDYPSDTLLPGMKLGWDFKTGLERRITSWKSS 149 (158)
Q Consensus 75 ~~iWss~~~~~-----~~~~~~~~L~d~GNLVl~~~~~~~~~~~iWqSfd~Ptdtllpgq~l~~~~~~g~~~~l~s~~s~ 149 (158)
.+||++++... .....| +|+|+|||||++ +.+|||| |||||+||||+|+.+..+| +.| ++.
T Consensus 93 ~~vWst~~~~~~~~~~~~~~~a-~L~d~GNlVl~~------~~~lWqS--~ptdtlLpg~~~~~~l~~g--~~L---~S~ 158 (276)
T 3m7h_A 93 RRVWLTDNSTFTSNDQWNRTHL-VLQDDGNIVLVD------SLALWNG--TPAIPLVPGAIDSLLLAPG--SEL---VQG 158 (276)
T ss_dssp TEEEEECCCCCCCTTHHHHEEE-EECTTSCEEEEE------EEEEEES--CTTSCCCCSCTTCEEECSS--EEE---CTT
T ss_pred CEEEEeCCCcccccccCCceEE-EEeCCCCEEecC------CceeeCc--ccccccccccccccccccC--ccc---ccC
Confidence 89999998642 123455 999999999995 4799999 9999999999998888888 567 578
Q ss_pred CCCCCcccC
Q 037333 150 DDPSPGDFI 158 (158)
Q Consensus 150 ~d~s~G~f~ 158 (158)
.||++|.|.
T Consensus 159 ~dps~G~fs 167 (276)
T 3m7h_A 159 VVYGAGASK 167 (276)
T ss_dssp CEEEETTEE
T ss_pred CCCCCceEE
Confidence 899999873
|
| >1dlp_A Lectin scafet precursor; two-domain lectin, beta prism II fold, native, sugar binding protein; 3.30A {Hyacinthoides hispanica} SCOP: b.78.1.1 b.78.1.1 | Back alignment and structure |
|---|
| >4h3o_A Lectin; cadmium, plant protein; 2.17A {Allium sativum} PDB: 1kj1_A* 1bwu_P* 1kj1_D* 1bwu_Q* 1bwu_A* 1bwu_D* | Back alignment and structure |
|---|
| >3a0c_A Mannose/sialic acid-binding lectin; beta-prism II, sugar binding protein; 2.00A {Polygonatum cyrtonema} PDB: 3a0d_A* 3a0e_A* | Back alignment and structure |
|---|
| >1b2p_A Protein (lectin); mannose-binding lectin, monocot, aglutinin, bluebell bulbs, carbohydrate interactions, sugar binding protein; 1.70A {Hyacinthoides hispanica} SCOP: b.78.1.1 | Back alignment and structure |
|---|
| >1xd5_A Gastrodianin-1, antifungal protein GAFP-1; monocot mannose binding lectin, monomer, homogeneous beta- sheet; 2.00A {Gastrodia elata} SCOP: b.78.1.1 PDB: 1xd6_A | Back alignment and structure |
|---|
| >2dpf_A Curculin; sweet taste, taste modifying, plant protein; 1.50A {Curculigo latifolia} PDB: 2d04_B* 2d04_A* | Back alignment and structure |
|---|
| >3dzw_A Agglutinin; lectin, mannobiose, mannose-alpha1, 3-mannose, D sugar binding protein; HET: MAN; 1.70A {Narcissus pseudonarcissus} SCOP: b.78.1.1 PDB: 1npl_A* 1jpc_A* 1msa_A* 1niv_A* | Back alignment and structure |
|---|
| >3mez_B Mannose-specific lectin 3 chain 2; heterotetramer, sugar binding protein; 1.94A {Crocus vernus} SCOP: b.78.1.0 | Back alignment and structure |
|---|
| >3r0e_B Lectin; carbohydrate binding, carbohydrate, sugar binding protein; 2.40A {Remusatia vivipara} | Back alignment and structure |
|---|
| >3r0e_A Lectin; carbohydrate binding, carbohydrate, sugar binding protein; 2.40A {Remusatia vivipara} | Back alignment and structure |
|---|
| >3mez_A Mannose-specific lectin 3 chain 1; heterotetramer, sugar binding protein; 1.94A {Crocus vernus} SCOP: b.78.1.0 | Back alignment and structure |
|---|
| >3a0c_A Mannose/sialic acid-binding lectin; beta-prism II, sugar binding protein; 2.00A {Polygonatum cyrtonema} PDB: 3a0d_A* 3a0e_A* | Back alignment and structure |
|---|
| >1b2p_A Protein (lectin); mannose-binding lectin, monocot, aglutinin, bluebell bulbs, carbohydrate interactions, sugar binding protein; 1.70A {Hyacinthoides hispanica} SCOP: b.78.1.1 | Back alignment and structure |
|---|
| >1xd5_A Gastrodianin-1, antifungal protein GAFP-1; monocot mannose binding lectin, monomer, homogeneous beta- sheet; 2.00A {Gastrodia elata} SCOP: b.78.1.1 PDB: 1xd6_A | Back alignment and structure |
|---|
| >2dpf_A Curculin; sweet taste, taste modifying, plant protein; 1.50A {Curculigo latifolia} PDB: 2d04_B* 2d04_A* | Back alignment and structure |
|---|
| >3mez_B Mannose-specific lectin 3 chain 2; heterotetramer, sugar binding protein; 1.94A {Crocus vernus} SCOP: b.78.1.0 | Back alignment and structure |
|---|
| >3m7h_A Putidacin L1; monocot mannose-binding lectin, bacteriocin, LLPA, pseudomon bacterial toxin, siras, antimicrobial protein; 2.20A {Pseudomonas SP} PDB: 3m7j_A* | Back alignment and structure |
|---|
| >3dzw_A Agglutinin; lectin, mannobiose, mannose-alpha1, 3-mannose, D sugar binding protein; HET: MAN; 1.70A {Narcissus pseudonarcissus} SCOP: b.78.1.1 PDB: 1npl_A* 1jpc_A* 1msa_A* 1niv_A* | Back alignment and structure |
|---|
| >3mez_A Mannose-specific lectin 3 chain 1; heterotetramer, sugar binding protein; 1.94A {Crocus vernus} SCOP: b.78.1.0 | Back alignment and structure |
|---|
| >3r0e_B Lectin; carbohydrate binding, carbohydrate, sugar binding protein; 2.40A {Remusatia vivipara} | Back alignment and structure |
|---|
| >4h3o_A Lectin; cadmium, plant protein; 2.17A {Allium sativum} PDB: 1kj1_A* 1bwu_P* 1kj1_D* 1bwu_Q* 1bwu_A* 1bwu_D* | Back alignment and structure |
|---|
| >3r0e_A Lectin; carbohydrate binding, carbohydrate, sugar binding protein; 2.40A {Remusatia vivipara} | Back alignment and structure |
|---|
| >1dlp_A Lectin scafet precursor; two-domain lectin, beta prism II fold, native, sugar binding protein; 3.30A {Hyacinthoides hispanica} SCOP: b.78.1.1 b.78.1.1 | Back alignment and structure |
|---|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST 
Original result of RPS-BLAST against SCOP70(version1.75) database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| 158 | ||||
| d1kj1a_ | 109 | b.78.1.1 (A:) Lectin (agglutinin) {Garlic (Allium | 4e-17 | |
| d1dlpa2 | 120 | b.78.1.1 (A:116-235) Fetuin-binding protein Scafet | 1e-11 | |
| d1jpca_ | 108 | b.78.1.1 (A:) Lectin (agglutinin) {Snowdrop (Galan | 6e-10 | |
| d1dlpa1 | 115 | b.78.1.1 (A:1-115) Fetuin-binding protein Scafet p | 8e-10 | |
| d1xd5a_ | 112 | b.78.1.1 (A:) Gastrodianin (antifungal protein) {G | 2e-09 | |
| d1b2pa_ | 119 | b.78.1.1 (A:) Lectin (agglutinin) {Bluebell (Scill | 2e-08 |
| >d1kj1a_ b.78.1.1 (A:) Lectin (agglutinin) {Garlic (Allium sativum) [TaxId: 4682]} Length = 109 | Back information, alignment and structure |
|---|
class: All beta proteins fold: beta-Prism II superfamily: alpha-D-mannose-specific plant lectins family: alpha-D-mannose-specific plant lectins domain: Lectin (agglutinin) species: Garlic (Allium sativum) [TaxId: 4682]
Score = 70.0 bits (171), Expect = 4e-17
Identities = 22/119 (18%), Positives = 47/119 (39%), Gaps = 14/119 (11%)
Query: 2 LSDGRTLVSKEGSFELGFFSPGSSKNRYVGIWYENMPVKTVVWVANRINPINDSSGLLVV 61
L++G L + S ++ + ++ + ++ + T VW +N V+
Sbjct: 4 LTNGEGLYA-GQSLDVEPYHFIMQEDCNLVLYDHS----TSVWASNTGILGKKGCKA-VL 57
Query: 62 NETGNLVLTSQNKSVVWSANLSKEVQTPVVLQLLDSGNLVLRGERDGGSETYLWQSFDY 120
GN V+ +W+++ + VL L + GN+V+ G +W + Y
Sbjct: 58 QSDGNFVVYDAEGRSLWASHSVRG-NGNYVLVLQEDGNVVIYGSD-------IWSTGTY 108
|
| >d1dlpa2 b.78.1.1 (A:116-235) Fetuin-binding protein Scafet precursor {Bluebell (Scilla campanulata) [TaxId: 81759]} Length = 120 | Back information, alignment and structure |
|---|
| >d1jpca_ b.78.1.1 (A:) Lectin (agglutinin) {Snowdrop (Galanthus nivalis) [TaxId: 4670]} Length = 108 | Back information, alignment and structure |
|---|
| >d1dlpa1 b.78.1.1 (A:1-115) Fetuin-binding protein Scafet precursor {Bluebell (Scilla campanulata) [TaxId: 81759]} Length = 115 | Back information, alignment and structure |
|---|
| >d1xd5a_ b.78.1.1 (A:) Gastrodianin (antifungal protein) {Gastrodia elata [TaxId: 91201]} Length = 112 | Back information, alignment and structure |
|---|
| >d1b2pa_ b.78.1.1 (A:) Lectin (agglutinin) {Bluebell (Scilla campanulata) [TaxId: 81759]} Length = 119 | Back information, alignment and structure |
|---|
Homologous Domains Detected by HHsearch 
Original result of HHsearch against SCOP70(version1.75) database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 158 | |||
| d1xd5a_ | 112 | Gastrodianin (antifungal protein) {Gastrodia elata | 99.9 | |
| d1jpca_ | 108 | Lectin (agglutinin) {Snowdrop (Galanthus nivalis) | 99.89 | |
| d1kj1a_ | 109 | Lectin (agglutinin) {Garlic (Allium sativum) [TaxI | 99.89 | |
| d1b2pa_ | 119 | Lectin (agglutinin) {Bluebell (Scilla campanulata) | 99.81 | |
| d1dlpa1 | 115 | Fetuin-binding protein Scafet precursor {Bluebell | 99.74 | |
| d1dlpa2 | 120 | Fetuin-binding protein Scafet precursor {Bluebell | 99.69 | |
| d1dlpa2 | 120 | Fetuin-binding protein Scafet precursor {Bluebell | 99.61 | |
| d1dlpa1 | 115 | Fetuin-binding protein Scafet precursor {Bluebell | 99.46 | |
| d1b2pa_ | 119 | Lectin (agglutinin) {Bluebell (Scilla campanulata) | 99.2 | |
| d1jpca_ | 108 | Lectin (agglutinin) {Snowdrop (Galanthus nivalis) | 99.19 | |
| d1kj1a_ | 109 | Lectin (agglutinin) {Garlic (Allium sativum) [TaxI | 99.09 | |
| d1xd5a_ | 112 | Gastrodianin (antifungal protein) {Gastrodia elata | 98.94 |
| >d1xd5a_ b.78.1.1 (A:) Gastrodianin (antifungal protein) {Gastrodia elata [TaxId: 91201]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: beta-Prism II superfamily: alpha-D-mannose-specific plant lectins family: alpha-D-mannose-specific plant lectins domain: Gastrodianin (antifungal protein) species: Gastrodia elata [TaxId: 91201]
Probab=99.90 E-value=3.4e-23 Score=146.19 Aligned_cols=103 Identities=20% Similarity=0.388 Sum_probs=85.1
Q ss_pred CCCCCeEEeCCCeEEEEEEcCCCCCceEEEEEEecCCCCcEEEEcCCCCCCCCCCceEEEecCCCEEEecCCCceEEeec
Q 037333 2 LSDGRTLVSKEGSFELGFFSPGSSKNRYVGIWYENMPVKTVVWVANRINPINDSSGLLVVNETGNLVLTSQNKSVVWSAN 81 (158)
Q Consensus 2 L~~~~~L~S~ng~F~lgF~~~~~~~~~~l~i~~~~~~~~~vvW~an~~~p~~~~~~~l~l~~dG~Lvl~d~~g~~iWss~ 81 (158)
|.+|+.|. +|.|+|.||.+++ |++++ ..++||.|++..+. .++.|.|+.||+|||++. +.++|+++
T Consensus 10 L~~g~~l~--~g~~~l~~q~DGN-----Lvly~----~~~~vW~s~~~~~~--~~~~l~l~~dGnLvl~~~-~~~~w~s~ 75 (112)
T d1xd5a_ 10 LDTGGSLA--EGGYLFIIQNDCN-----LVLYD----NNRAVWASGTNGKA--SGCVLKMQNDGNLVIYSG-SRAIWASN 75 (112)
T ss_dssp ECTTCEEE--ETTEEEEECTTSC-----EEEEE----TTEEEEECCCTTSC--SSEEEEECTTSCEEEEET-TEEEEECC
T ss_pred ecCCCEEE--ECCEEEEEcCCCC-----EEEEc----CCcEEEEccCccCC--CCcEEEEeccccEEEEec-CCeEEEEe
Confidence 66788886 5999999999987 66755 46899999998773 367899999999999996 56788888
Q ss_pred CCCCCCcceEEEeccCCCEEEecCCCCCCCeEEEEeCCCCCC
Q 037333 82 LSKEVQTPVVLQLLDSGNLVLRGERDGGSETYLWQSFDYPSD 123 (158)
Q Consensus 82 ~~~~~~~~~~~~L~d~GNLVl~~~~~~~~~~~iWqSfd~Ptd 123 (158)
+........+ +|+||||||||+. .+.++|||+.+|.|
T Consensus 76 t~~~~~~~~l-~L~ddGNlvly~~----~~~~~W~S~t~~~n 112 (112)
T d1xd5a_ 76 TNRQNGNYYL-ILQRDRNVVIYDN----SNNAIWATHTNVGN 112 (112)
T ss_dssp CCCSCCCCEE-EECTTSCEEEECT----TSCEEEECCCCCCC
T ss_pred eccCCCceEE-EEcCCCCEEEECC----CCcEEecCCCccCC
Confidence 7654433455 9999999999987 67899999999975
|
| >d1jpca_ b.78.1.1 (A:) Lectin (agglutinin) {Snowdrop (Galanthus nivalis) [TaxId: 4670]} | Back information, alignment and structure |
|---|
| >d1kj1a_ b.78.1.1 (A:) Lectin (agglutinin) {Garlic (Allium sativum) [TaxId: 4682]} | Back information, alignment and structure |
|---|
| >d1b2pa_ b.78.1.1 (A:) Lectin (agglutinin) {Bluebell (Scilla campanulata) [TaxId: 81759]} | Back information, alignment and structure |
|---|
| >d1dlpa1 b.78.1.1 (A:1-115) Fetuin-binding protein Scafet precursor {Bluebell (Scilla campanulata) [TaxId: 81759]} | Back information, alignment and structure |
|---|
| >d1dlpa2 b.78.1.1 (A:116-235) Fetuin-binding protein Scafet precursor {Bluebell (Scilla campanulata) [TaxId: 81759]} | Back information, alignment and structure |
|---|
| >d1dlpa2 b.78.1.1 (A:116-235) Fetuin-binding protein Scafet precursor {Bluebell (Scilla campanulata) [TaxId: 81759]} | Back information, alignment and structure |
|---|
| >d1dlpa1 b.78.1.1 (A:1-115) Fetuin-binding protein Scafet precursor {Bluebell (Scilla campanulata) [TaxId: 81759]} | Back information, alignment and structure |
|---|
| >d1b2pa_ b.78.1.1 (A:) Lectin (agglutinin) {Bluebell (Scilla campanulata) [TaxId: 81759]} | Back information, alignment and structure |
|---|
| >d1jpca_ b.78.1.1 (A:) Lectin (agglutinin) {Snowdrop (Galanthus nivalis) [TaxId: 4670]} | Back information, alignment and structure |
|---|
| >d1kj1a_ b.78.1.1 (A:) Lectin (agglutinin) {Garlic (Allium sativum) [TaxId: 4682]} | Back information, alignment and structure |
|---|
| >d1xd5a_ b.78.1.1 (A:) Gastrodianin (antifungal protein) {Gastrodia elata [TaxId: 91201]} | Back information, alignment and structure |
|---|