Citrus Sinensis ID: 037345

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------
MTSNDDFSEDLLIEILSRLPVKSLMRYKFVCRFWCALIKSPRFVSRHIINYNDDNTRLVVEKVPGYDEGPPYVLFHDETLVDLSNDERFEPPTRHDHELLGNCNGLFCLHDKNSNRISIWNLATREFRALPKWKGEIPRHKWVYQLNFGFELDSSSNDYKIIFILNLTDDNTRKDSVSTEVILHTLSTDSWRYLKANELSDYSFLGGQQSENTYLDRICYWIAWRYNNCQEILSFHMRDEAFHVIKCPDNSYFPNPILGVYDNSLHFLDFDRSESCFEKWVMKEGSWTKQLSVGPILGVLRALEFWKNGSFFIESNTNQLLLYDPNTRALRDVGLGTDGLFLHRYKESLISTEWEDW
ccccccccHHHHHHHHHcccHHHHHHHccccccHHHHcccHHHHHHHHHHccccccEEEEEEcccccccccEEccccccccccccccccccccccccEEEEEEEcEEEEEEccccEEEEEEcccccEEEcccccccccccccccEEEEEEEcccccccEEEEEEEEEEccccccccccEEEEEEEcccccEEEEccccccccccccccccccEEEccEEEEEEEEEcccEEEEEEEccccEEEEEcccccccccccEEEEEccEEEEEEEcccccEEEEEEEccccEEEEEEEcccccccEEEEEEEcccEEEEEcccEEEEEEccccEEEEEEEccccEEEEEEEccccccccccc
ccccccccHHHHHHHHHHccHHHHHHHHHHHHHHHHHHcccHHHHHHHHHcccccEEEEEEEccccEEccccccccccccccccccccccccccEEEEEEEcccEEEEEEEcccccEEEEccccccEEEEccccccccccccEEEEEEEEccccccccEEEEEEEEccccccccccccEEEEEEEcccccEEEEEccccccccEEcccccccEEEEEEEEEEEEEccccEEEEEEEcccccccccccccccccccEEEEEEccEEEEEEEcccccEEEEEEEEccEccEEEEEcccccccccEEEEEcccEEEEccccEEEEEccccccEEEEEEccccEEEEEEEccccccccEcc
mtsnddfsEDLLIEILSRLPVKSLMRYKFVCRFWCAliksprfvSRHIInynddntrlvvekvpgydegppyvlfhdetlvdlsnderfepptrhdhellgncnglfclhdknsnrISIWNLATREFralpkwkgeiprhkwvYQLNFgfeldsssndyKIIFILNltddntrkdsvSTEVILHTLSTDSWRYLKANelsdysflggqqsentylDRICYWIAWRYNNCQEILSFHmrdeafhvikcpdnsyfpnpilgvydnslhfldfdrseSCFEKWVMkegswtkqlsvgpiLGVLRALefwkngsffiesntnqlllydpntralrdvglgtdgLFLHRYKESLISTEWEDW
mtsnddfsedLLIEILSRLPVKSLMRYKFVCRFWCALIKSPRFVSRHiinynddntrlVVEKVPGYDEGPPYVLFHDETLVDLSNDERFEPPTRHDHELLGNCNGLFCLHDKNSNRISIWNLATREFRAlpkwkgeiprhKWVYQLNFGFELDSSSNDYKIIFILnltddntrkdSVSTEVILhtlstdswryLKANELSDysflggqqSENTYLDRICYWIAWRYNNCQEILSFHMRDEAFHVIKCPDNSYFPNPILGVYDNSLHFLDFDRSESCFEKWVMKegswtkqlsvgPILGVLRALEFWKNGSFFIESNTNQLLLYDPNTRALRDVGLGTDGLFLHrykeslistewedw
MTSNDDFSEDLLIEILSRLPVKSLMRYKFVCRFWCALIKSPRFVSRHIINYNDDNTRLVVEKVPGYDEGPPYVLFHDETLVDLSNDERFEPPTRHDHELLGNCNGLFCLHDKNSNRISIWNLATREFRALPKWKGEIPRHKWVYQLNFGFELDSSSNDYKIIFILNLTDDNTRKDSVSTEVILHTLSTDSWRYLKANELSDYSFLGGQQSENTYLDRICYWIAWRYNNCQEILSFHMRDEAFHVIKCPDNSYFPNPILGVYDNSLHFLDFDRSESCFEKWVMKEGSWTKQLSVGPILGVLRALEFWKNGSFFIESNTNQLLLYDPNTRALRDVGLGTDGLFLHRYKESLISTEWEDW
*********DLLIEILSRLPVKSLMRYKFVCRFWCALIKSPRFVSRHIINYNDDNTRLVVEKVPGYDEGPPYVLFHDETLVDLSN*********HDHELLGNCNGLFCLHDKNSNRISIWNLATREFRALPKWKGEIPRHKWVYQLNFGFELDSSSNDYKIIFILNLTDDNTRKDSVSTEVILHTLSTDSWRYLKANELSDYSFLGGQQSENTYLDRICYWIAWRYNNCQEILSFHMRDEAFHVIKCPDNSYFPNPILGVYDNSLHFLDFDRSESCFEKWVMKEGSWTKQLSVGPILGVLRALEFWKNGSFFIESNTNQLLLYDPNTRALRDVGLGTDGLFLHRYKESLIST*****
**S*DDFSEDLLIEILSRLPVKSLMRYKFVCRFWCALIKSPRFVSRHIINYNDDNTRLVVEKVPGYDEGPPYVLFHDETLVDLSNDERFEPPTRHDHELLGNCNGLFCLHDKNSNRISIWNLATREFRALPKWKGEIPRHKWVYQLNFGFELDSSSNDYKIIFILNLTDDNTRKDSVSTEVILHTLSTDSWRYLKANELSDYSFLGGQQSENTYLDRICYWIAWRYNNCQEILSFHMRDEAFHVIKCPDNSYFPNPILGVYDNSLHFLDFDRSESCFEKWVMKEGSWTKQLSVGPILGVLRALEFWKNGSFFIESNTNQLLLYDPNTRALRDVGLGTDGLFLHRYKESLISTEWED*
********EDLLIEILSRLPVKSLMRYKFVCRFWCALIKSPRFVSRHIINYNDDNTRLVVEKVPGYDEGPPYVLFHDETLVDLSNDERFEPPTRHDHELLGNCNGLFCLHDKNSNRISIWNLATREFRALPKWKGEIPRHKWVYQLNFGFELDSSSNDYKIIFILNLTDDNTRKDSVSTEVILHTLSTDSWRYLKANELSDYSFLGGQQSENTYLDRICYWIAWRYNNCQEILSFHMRDEAFHVIKCPDNSYFPNPILGVYDNSLHFLDFDRSESCFEKWVMKEGSWTKQLSVGPILGVLRALEFWKNGSFFIESNTNQLLLYDPNTRALRDVGLGTDGLFLHRYKESL********
****DDFSEDLLIEILSRLPVKSLMRYKFVCRFWCALIKSPRFVSRHIINYNDDNTRLVVEKVPGYDEGPPYVLFHDETLVDLSNDERFEPPTRHDHELLGNCNGLFCLHDKNSNRISIWNLATREFRALPKWKGEIPRHKWVYQLNFGFELDSSSNDYKIIFILNLTDDNTRKDSVSTEVILHTLSTDSWRYLKANELSDYSFLGGQQSENTYLDRICYWIAWRYNNCQEILSFHMRDEAFHVIKCPDNSYFPNPILGVYDNSLHFLDFDRSESCFEKWVMKEGSWTKQLSVGPILGVLRALEFWKNGSFFIESNTNQLLLYDPNTRALRDVGLGTDGLFLHRYKESLISTEWEDW
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MTSNDDFSEDLLIEILSRLPVKSLMRYKFVCRFWCALIKSPRFVSRHIINYNDDNTRLVVEKVPGYDEGPPYVLFHDETLVDLSNDERFEPPTRHDHELLGNCNGLFCLHDKNSNRISIWNLATREFRALPKWKGEIPRHKWVYQLNFGFELDSSSNDYKIIFILNLTDDNTRKDSVSTEVILHTLSTDSWRYLKANELSDYSFLGGQQSENTYLDRICYWIAWRYNNCQEILSFHMRDEAFHVIKCPDNSYFPNPILGVYDNSLHFLDFDRSESCFEKWVMKEGSWTKQLSVGPILGVLRALEFWKNGSFFIESNTNQLLLYDPNTRALRDVGLGTDGLFLHRYKESLISTEWEDW
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query357 2.2.26 [Sep-21-2011]
Q9LPW2416 Putative F-box/kelch-repe yes no 0.792 0.680 0.239 1e-12
Q9LU24360 Putative F-box protein At no no 0.703 0.697 0.257 1e-12
Q9FZF8389 Putative F-box protein At no no 0.834 0.766 0.236 2e-12
Q9LUU3386 Putative F-box/kelch-repe no no 0.467 0.432 0.308 2e-11
Q9LJ39270 Putative F-box protein At no no 0.605 0.8 0.268 5e-11
Q9SAF4435 Putative F-box/kelch-repe no no 0.784 0.643 0.255 8e-11
O49421411 F-box protein At4g19940 O no no 0.862 0.749 0.240 9e-11
Q9SFC7417 F-box protein At3g07870 O no no 0.823 0.705 0.228 2e-10
Q3ECE2369 Putative F-box protein At no no 0.635 0.615 0.253 2e-10
Q9LIR8364 F-box/kelch-repeat protei no no 0.753 0.739 0.245 2e-10
>sp|Q9LPW2|FBK2_ARATH Putative F-box/kelch-repeat protein At1g12870 OS=Arabidopsis thaliana GN=At1g12870 PE=4 SV=2 Back     alignment and function desciption
 Score = 74.3 bits (181), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 75/313 (23%), Positives = 144/313 (46%), Gaps = 30/313 (9%)

Query: 1   MTSNDDFSEDLLIEILSRLPVKSLMRYKFVCRFWCALIKSPRFVSRHII----NYNDDNT 56
           M ++    +D++ EI  +LPVK+LMR+K + + W + ++S  F  RH+     ++ D   
Sbjct: 27  MIASSSLPDDVVEEIFLKLPVKALMRFKSLSKQWRSTLESCYFSQRHLKIAERSHVDHPK 86

Query: 57  RLVVEKVPGYDEGPPYVLFHDETLVDLSNDERFEPPTRHDHELLG--NCNGLFCLHDKNS 114
            +++ +    D    +     E++  LS+   F  P    H +    +C+G+FC+H   +
Sbjct: 87  VMIITEKWNPDIEISFRTISLESVSFLSS-ALFNFPRGFHHPIYASESCDGIFCIHSPKT 145

Query: 115 NRISIWNLATREFRALPKWKGEIPRHKWVYQLNFGFELDS-------SSNDYKIIFILNL 167
             I + N ATR FR LP  + +I  HK    L+   ++          + DYK++++ N 
Sbjct: 146 QDIYVVNPATRWFRQLPPARFQIFMHKLNPTLDTLRDMIPVNHLAFVKATDYKLVWLYN- 204

Query: 168 TDDNTRKDSVSTEVILHTLSTDSWRYLKANELSDYSFLGGQQSENTYLDRICYWIAWRYN 227
             D +R     T+  +     ++WRYL    +  Y     Q+  +   +   YW    YN
Sbjct: 205 -SDASR----VTKCEVFDFKANAWRYLTC--IPSYRIYHDQKPASA--NGTLYWFTETYN 255

Query: 228 NCQEILSFHMRDEAFHVIKCPD--NSYFPNPI-LGVYDNSLHFLDFDRSESCFEK-WVMK 283
              ++++  +  E F ++  P    S  P+ I + + DNSL   + +  +   ++ W +K
Sbjct: 256 AEIKVIALDIHTEIFRLLPKPSLIASSEPSHIDMCIIDNSLCMYETEGDKKIIQEIWRLK 315

Query: 284 --EGSWTKQLSVG 294
             E +W K  ++ 
Sbjct: 316 SSEDAWEKIYTIN 328

Arabidopsis thaliana (taxid: 3702)
>sp|Q9LU24|FB145_ARATH Putative F-box protein At3g16210 OS=Arabidopsis thaliana GN=At3g16210 PE=4 SV=1 Back     alignment and function description
>sp|Q9FZF8|FB44_ARATH Putative F-box protein At1g47790 OS=Arabidopsis thaliana GN=At1g47790 PE=4 SV=1 Back     alignment and function description
>sp|Q9LUU3|FBK58_ARATH Putative F-box/kelch-repeat protein At3g17280 OS=Arabidopsis thaliana GN=At3g17280 PE=4 SV=1 Back     alignment and function description
>sp|Q9LJ39|FB185_ARATH Putative F-box protein At3g24700 OS=Arabidopsis thaliana GN=At3g24700 PE=4 SV=1 Back     alignment and function description
>sp|Q9SAF4|FBK3_ARATH Putative F-box/kelch-repeat protein At1g13200 OS=Arabidopsis thaliana GN=At1g13200 PE=4 SV=1 Back     alignment and function description
>sp|O49421|FB238_ARATH F-box protein At4g19940 OS=Arabidopsis thaliana GN=At4g19940 PE=4 SV=1 Back     alignment and function description
>sp|Q9SFC7|FB135_ARATH F-box protein At3g07870 OS=Arabidopsis thaliana GN=At3g07870 PE=2 SV=1 Back     alignment and function description
>sp|Q3ECE2|FB85_ARATH Putative F-box protein At1g70960 OS=Arabidopsis thaliana GN=At1g70960 PE=4 SV=1 Back     alignment and function description
>sp|Q9LIR8|FBK67_ARATH F-box/kelch-repeat protein At3g23880 OS=Arabidopsis thaliana GN=At3g23880 PE=2 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query357
224119696367 predicted protein [Populus trichocarpa] 0.921 0.896 0.355 1e-42
224133722443 predicted protein [Populus trichocarpa] 0.949 0.765 0.305 7e-35
224119700272 predicted protein [Populus trichocarpa] 0.635 0.834 0.375 5e-28
301069172393 MdFBX17 [Malus x domestica] 0.915 0.832 0.293 1e-27
356571461405 PREDICTED: F-box/kelch-repeat protein At 0.955 0.841 0.299 2e-27
301069150393 MdFBX6 [Malus x domestica] 0.882 0.801 0.304 2e-27
316996546400 hypothetical protein [Pyrus pyrifolia] 0.879 0.785 0.309 4e-27
198400307393 F-box protein FB1 [Malus x domestica] 0.915 0.832 0.291 4e-27
316996536393 hypothetical protein [Pyrus pyrifolia] 0.899 0.816 0.299 6e-27
224117590441 f-box family protein [Populus trichocarp 0.929 0.752 0.308 2e-26
>gi|224119696|ref|XP_002318137.1| predicted protein [Populus trichocarpa] gi|222858810|gb|EEE96357.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
 Score =  180 bits (456), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 127/357 (35%), Positives = 199/357 (55%), Gaps = 28/357 (7%)

Query: 9   EDLLIEILSRLPVKSLMRYKFVCRFWCALIKSPRFVSRHIINY--NDDNTRLVVEKV-PG 65
           ED++IEILS LPVK+L+++K VC+ W  +I S  F+S H+ N+  N  +  L+   V P 
Sbjct: 11  EDVIIEILSLLPVKTLLQFKCVCKSWYGIITSSNFISLHLNNHYNNIKSGHLLAHFVCPQ 70

Query: 66  YDEGPPYVLFHDETLVDLSNDERFEPPTRHDHELLGNCNGLFCLHDKNSNRISIWNLATR 125
             E     LF DE+L DLS+ +  +PP R    L G CNG+F +  ++S+   +WN AT+
Sbjct: 71  LLE-----LFQDESLTDLSH-QGLDPPIRG--RLCGPCNGIFYVDSEDSSGSGLWNPATK 122

Query: 126 EFRALP---KWKGEIPRHKWVYQLNFGFELDSSSNDYKIIFIL-NLTDDNTRKDSVSTEV 181
           EF+ LP   + K  +P +   Y+ ++GF  D  +NDYK++ I  + T +   +   S+ V
Sbjct: 123 EFKLLPEKIRNKSSLPLY---YEDSYGFGFDPVTNDYKVVVIRESYTREYYLEKFPSSLV 179

Query: 182 ILHTLSTDSWRYLKANELSDYSFLGGQQSENTYLDRICYWIAWRYNNCQEILSFHMRDEA 241
           I++TL TDSWR   + +   Y+ LG     N  +D + YW A    +   ILSF+M  +A
Sbjct: 180 IVYTLRTDSWRCWGSLD-QGYTLLGNYCYTN--VDGVYYWQAGHGVHMNVILSFNMATDA 236

Query: 242 FHVIKCPD---NSYFPNPILGVYDNSLHFLDFDRSESCFEKWVMKEGSWTKQLSVGPILG 298
           F  I+ PD    +Y    IL  Y +S+ F      E   + WV+ EG W +Q    P+L 
Sbjct: 237 FQEIQEPDYDKPAYSTRLIL--YHDSIAFSTVHNVEKFLDIWVLNEGCWIRQFKSRPLLE 294

Query: 299 VLRALEFWKNGSFFIESNTNQLLLYDPNTRALRDVGLGTDGLF--LHRYKESLISTE 353
           +   +  WKNG+  ++S+ +QL+LYD N + L+D+     G+   +  Y+ESL+S +
Sbjct: 295 LRNPVAHWKNGNVILDSDNDQLMLYDTNKQELKDLRFKGTGVCYEILVYRESLVSIK 351

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|224133722|ref|XP_002327664.1| predicted protein [Populus trichocarpa] gi|222836749|gb|EEE75142.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|224119700|ref|XP_002318138.1| predicted protein [Populus trichocarpa] gi|222858811|gb|EEE96358.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|301069172|dbj|BAJ11965.1| MdFBX17 [Malus x domestica] Back     alignment and taxonomy information
>gi|356571461|ref|XP_003553895.1| PREDICTED: F-box/kelch-repeat protein At3g06240-like [Glycine max] Back     alignment and taxonomy information
>gi|301069150|dbj|BAJ11954.1| MdFBX6 [Malus x domestica] Back     alignment and taxonomy information
>gi|316996546|dbj|BAJ52236.1| hypothetical protein [Pyrus pyrifolia] Back     alignment and taxonomy information
>gi|198400307|gb|ACH87163.1| F-box protein FB1 [Malus x domestica] Back     alignment and taxonomy information
>gi|316996536|dbj|BAJ52227.1| hypothetical protein [Pyrus pyrifolia] Back     alignment and taxonomy information
>gi|224117590|ref|XP_002331674.1| f-box family protein [Populus trichocarpa] gi|222874093|gb|EEF11224.1| f-box family protein [Populus trichocarpa] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query357
TAIR|locus:2010316416 AT1G12870 "AT1G12870" [Arabido 0.778 0.668 0.243 7.7e-14
TAIR|locus:2082410427 AT3G06240 "AT3G06240" [Arabido 0.663 0.555 0.238 7.9e-14
TAIR|locus:4515102531303 AT1G14315 "AT1G14315" [Arabido 0.327 0.386 0.343 1.5e-13
TAIR|locus:2076196364 AT3G23880 "AT3G23880" [Arabido 0.862 0.846 0.244 1.9e-13
TAIR|locus:2088985386 AT3G17280 "AT3G17280" [Arabido 0.641 0.593 0.293 6e-12
TAIR|locus:2202425389 AT1G47790 "AT1G47790" [Arabido 0.697 0.640 0.244 1e-11
TAIR|locus:2202440391 AT1G47730 "AT1G47730" [Arabido 0.848 0.774 0.248 1.1e-11
TAIR|locus:2027397363 AT1G11620 "AT1G11620" [Arabido 0.823 0.809 0.256 1.5e-11
TAIR|locus:2031845435 AT1G13200 "AT1G13200" [Arabido 0.781 0.641 0.264 2.4e-11
TAIR|locus:2013915369 AT1G70960 "AT1G70960" [Arabido 0.806 0.780 0.249 1.3e-10
TAIR|locus:2010316 AT1G12870 "AT1G12870" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 203 (76.5 bits), Expect = 7.7e-14, P = 7.7e-14
 Identities = 75/308 (24%), Positives = 142/308 (46%)

Query:     1 MTSNDDFSEDLLIEILSRLPVKSLMRYKFVCRFWCALIKSPRFVSRHII----NYNDDNT 56
             M ++    +D++ EI  +LPVK+LMR+K + + W + ++S  F  RH+     ++ D   
Sbjct:    27 MIASSSLPDDVVEEIFLKLPVKALMRFKSLSKQWRSTLESCYFSQRHLKIAERSHVDHPK 86

Query:    57 RLVVEKVPGYDEGPPYVLFHDETLVDLSNDERFEPPTRHDHELLGN--CNGLFCLHDKNS 114
              +++ +    D    +     E++  LS+   F  P    H +  +  C+G+FC+H   +
Sbjct:    87 VMIITEKWNPDIEISFRTISLESVSFLSS-ALFNFPRGFHHPIYASESCDGIFCIHSPKT 145

Query:   115 NRISIWNLATREFRALPKWKGEIPRHKWVYQLNFGFELDS-------SSNDYKIIFILNL 167
               I + N ATR FR LP  + +I  HK    L+   ++          + DYK++++ N 
Sbjct:   146 QDIYVVNPATRWFRQLPPARFQIFMHKLNPTLDTLRDMIPVNHLAFVKATDYKLVWLYN- 204

Query:   168 TDDNTRKDSVSTEVILHTLSTDSWRYLKANELSDYSFLGGQQSENTYLDRICYWIAWRYN 227
               D +R     T+  +     ++WRYL    +  Y     Q+  +   +   YW    YN
Sbjct:   205 -SDASRV----TKCEVFDFKANAWRYLTC--IPSYRIYHDQKPASA--NGTLYWFTETYN 255

Query:   228 NCQEILSFHMRDEAFHVIKCPD--NSYFPNPI-LGVYDNSLHFLDFDRSESCFEK-WVMK 283
                ++++  +  E F ++  P    S  P+ I + + DNSL   + +  +   ++ W +K
Sbjct:   256 AEIKVIALDIHTEIFRLLPKPSLIASSEPSHIDMCIIDNSLCMYETEGDKKIIQEIWRLK 315

Query:   284 --EGSWTK 289
               E +W K
Sbjct:   316 SSEDAWEK 323
GO:0003674 "molecular_function" evidence=ND
GO:0005737 "cytoplasm" evidence=ISM
GO:0008150 "biological_process" evidence=ND
GO:0005774 "vacuolar membrane" evidence=IDA
TAIR|locus:2082410 AT3G06240 "AT3G06240" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:4515102531 AT1G14315 "AT1G14315" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2076196 AT3G23880 "AT3G23880" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2088985 AT3G17280 "AT3G17280" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2202425 AT1G47790 "AT1G47790" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2202440 AT1G47730 "AT1G47730" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2027397 AT1G11620 "AT1G11620" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2031845 AT1G13200 "AT1G13200" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2013915 AT1G70960 "AT1G70960" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
eugene3.00120932
hypothetical protein (367 aa)
(Populus trichocarpa)
Predicted Functional Partners:
 
Sorry, there are no predicted associations at the current settings.
 

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query357
TIGR01640230 TIGR01640, F_box_assoc_1, F-box protein interactio 1e-15
pfam0064648 pfam00646, F-box, F-box domain 7e-06
smart0025641 smart00256, FBOX, A Receptor for Ubiquitination Ta 9e-05
pfam1293747 pfam12937, F-box-like, F-box-like 2e-04
>gnl|CDD|233502 TIGR01640, F_box_assoc_1, F-box protein interaction domain Back     alignment and domain information 
 Score = 74.7 bits (184), Expect = 1e-15
 Identities = 48/226 (21%), Positives = 83/226 (36%), Gaps = 33/226 (14%)

Query: 103 CNGLFCLHDKNSNRISIWNLATREFRALPKWKGEIPRHKWVYQLNFGFELDSSSNDYKII 162
           C+GL C       R+ +WN +T + R LP  K    R        +    D     YK++
Sbjct: 4   CDGLICFS--YGKRLVVWNPSTGQSRWLPTPK---SRRSNKESDTYFLGYDPIEKQYKVL 58

Query: 163 FILNLTDDNTRKDSVSTEVILHTLSTDSWRYLKANELSDYSFLGGQQSENTYLDRICYWI 222
                   +   +   +E  ++TL ++SWR ++ +           +S    ++ + Y++
Sbjct: 59  CFS-----DRSGNRNQSEHQVYTLGSNSWRTIECSPPHHPL-----KSRGVCINGVLYYL 108

Query: 223 AWRY--NNCQEILSFHMRDEAF------HVIKCPDNSYFPNPILGVYDNSLHFLDFDRSE 274
           A+    N    I+SF +  E F               Y     L  Y   L  L   +  
Sbjct: 109 AYTLKTNPDYFIVSFDVSSERFKEFIPLPCGNSDSVDYL---SLINYKGKLAVLKQKKDT 165

Query: 275 SCFEKWVMK---EGSWTKQLSV-GPILGVLRALEFWKNGSFFIESN 316
           + F+ WV+    +  W+K  +V  P L  L    F    S F +  
Sbjct: 166 NNFDLWVLNDAGKQEWSKLFTVPIPPLPDLVDDNF---LSGFTDKG 208

This model describes a large family of plant domains, with several hundred members in Arabidopsis thaliana. Most examples are found C-terminal to an F-box (pfam00646), a 60 amino acid motif involved in ubiquitination of target proteins to mark them for degradation. Two-hybid experiments support the idea that most members are interchangeable F-box subunits of SCF E3 complexes. Some members have two copies of this domain. Length = 230
>gnl|CDD|201368 pfam00646, F-box, F-box domain Back     alignment and domain information
>gnl|CDD|197608 smart00256, FBOX, A Receptor for Ubiquitination Targets Back     alignment and domain information
>gnl|CDD|221867 pfam12937, F-box-like, F-box-like Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 357
TIGR01640230 F_box_assoc_1 F-box protein interaction domain. Th 100.0
PF07734164 FBA_1: F-box associated; InterPro: IPR006527 This 99.68
PF08268129 FBA_3: F-box associated domain; InterPro: IPR01318 99.65
PLN03215373 ascorbic acid mannose pathway regulator 1; Provisi 99.56
PHA02713557 hypothetical protein; Provisional 99.08
PLN02153341 epithiospecifier protein 99.0
KOG4441571 consensus Proteins containing BTB/POZ and Kelch do 98.98
PLN02193470 nitrile-specifier protein 98.93
PHA03098534 kelch-like protein; Provisional 98.91
PF1293747 F-box-like: F-box-like; PDB: 1P22_A 2OVP_B 2OVR_B 98.91
PHA02790480 Kelch-like protein; Provisional 98.9
PHA02713557 hypothetical protein; Provisional 98.87
PF0064648 F-box: F-box domain; InterPro: IPR001810 The F-box 98.75
TIGR03547346 muta_rot_YjhT mutatrotase, YjhT family. Members of 98.74
KOG4441571 consensus Proteins containing BTB/POZ and Kelch do 98.73
smart0025641 FBOX A Receptor for Ubiquitination Targets. 98.7
TIGR03548323 mutarot_permut cyclically-permuted mutatrotase fam 98.63
PRK14131376 N-acetylneuraminic acid mutarotase; Provisional 98.6
PHA03098534 kelch-like protein; Provisional 98.45
PHA02790480 Kelch-like protein; Provisional 98.43
PLN02153341 epithiospecifier protein 98.42
PLN02193470 nitrile-specifier protein 98.41
PRK14131376 N-acetylneuraminic acid mutarotase; Provisional 98.25
TIGR03548323 mutarot_permut cyclically-permuted mutatrotase fam 98.2
TIGR03547346 muta_rot_YjhT mutatrotase, YjhT family. Members of 98.13
KOG4693392 consensus Uncharacterized conserved protein, conta 98.0
KOG4693392 consensus Uncharacterized conserved protein, conta 97.54
KOG1230 521 consensus Protein containing repeated kelch motifs 97.39
KOG2120419 consensus SCF ubiquitin ligase, Skp2 component [Po 97.22
KOG0281499 consensus Beta-TrCP (transducin repeats containing 97.19
KOG0379 482 consensus Kelch repeat-containing proteins [Genera 96.86
KOG0379 482 consensus Kelch repeat-containing proteins [Genera 96.85
KOG1230 521 consensus Protein containing repeated kelch motifs 96.55
KOG2997366 consensus F-box protein FBX9 [General function pre 96.01
PF02191250 OLF: Olfactomedin-like domain; InterPro: IPR003112 95.59
TIGR01640230 F_box_assoc_1 F-box protein interaction domain. Th 94.43
PF1396450 Kelch_6: Kelch motif 93.8
smart00284255 OLF Olfactomedin-like domains. 93.32
PF08450246 SGL: SMP-30/Gluconolaconase/LRE-like region; Inter 91.79
KOG4152 830 consensus Host cell transcription factor HCFC1 [Ce 91.79
COG3055381 Uncharacterized protein conserved in bacteria [Fun 91.75
PF0134447 Kelch_1: Kelch motif; InterPro: IPR006652 Kelch is 91.42
KOG2055 514 consensus WD40 repeat protein [General function pr 91.06
PF02897414 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal 90.43
PF1396450 Kelch_6: Kelch motif 90.22
PF0764649 Kelch_2: Kelch motif; InterPro: IPR011498 Kelch is 90.03
COG4257353 Vgb Streptogramin lyase [Defense mechanisms] 90.02
PF07250243 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterP 88.55
KOG0274537 consensus Cdc4 and related F-box and WD-40 protein 87.75
PF13360238 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 87.2
KOG0310 487 consensus Conserved WD40 repeat-containing protein 87.11
PF07762131 DUF1618: Protein of unknown function (DUF1618); In 86.97
PF13360238 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 86.97
KOG4341483 consensus F-box protein containing LRR [General fu 86.76
COG4257353 Vgb Streptogramin lyase [Defense mechanisms] 86.64
KOG3545249 consensus Olfactomedin and related extracellular m 85.8
PRK11138 394 outer membrane biogenesis protein BamB; Provisiona 85.06
TIGR03300 377 assembly_YfgL outer membrane assembly lipoprotein 82.02
PF06433342 Me-amine-dh_H: Methylamine dehydrogenase heavy cha 81.16
COG3055381 Uncharacterized protein conserved in bacteria [Fun 80.08
>TIGR01640 F_box_assoc_1 F-box protein interaction domain Back     alignment and domain information 
Probab=100.00  E-value=1.9e-34  Score=248.75  Aligned_cols=214  Identities=21%  Similarity=0.394  Sum_probs=161.2

Q ss_pred             EecccceEEEeecCCCeEEEEeccccchhcCCCCCCCCCCccccccceeEEeeeCCCCCeEEEEEEEecCCCCCCCCcce
Q 037345          100 LGNCNGLFCLHDKNSNRISIWNLATREFRALPKWKGEIPRHKWVYQLNFGFELDSSSNDYKIIFILNLTDDNTRKDSVST  179 (357)
Q Consensus       100 ~~s~~GLll~~~~~~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~lg~d~~~~~ykvv~~~~~~~~~~~~~~~~~  179 (357)
                      ++|||||||+...  ..++||||+||+++.||+++.......   ...++||||+.+++||||++......   .....+
T Consensus         1 ~~sCnGLlc~~~~--~~~~V~NP~T~~~~~LP~~~~~~~~~~---~~~~~~G~d~~~~~YKVv~~~~~~~~---~~~~~~   72 (230)
T TIGR01640         1 VVPCDGLICFSYG--KRLVVWNPSTGQSRWLPTPKSRRSNKE---SDTYFLGYDPIEKQYKVLCFSDRSGN---RNQSEH   72 (230)
T ss_pred             CcccceEEEEecC--CcEEEECCCCCCEEecCCCCCcccccc---cceEEEeecccCCcEEEEEEEeecCC---CCCccE
Confidence            3689999998765  478999999999999998764211111   11589999999999999999764321   123466


Q ss_pred             EEEEEEcCCCceeecccCCcccccccCCCCCcceEECceEEEEEccCC-Cc-CEEEEEECCCccee-EecCCCCCC--CC
Q 037345          180 EVILHTLSTDSWRYLKANELSDYSFLGGQQSENTYLDRICYWIAWRYN-NC-QEILSFHMRDEAFH-VIKCPDNSY--FP  254 (357)
Q Consensus       180 ~~~vyss~t~~W~~~~~~~~~~~~~~~~~~~~~v~~~G~lyw~~~~~~-~~-~~i~~fD~~~e~~~-~i~lP~~~~--~~  254 (357)
                      +  ||++++++||.++..+. ...  ..  ..+|++||++||++.... .. ..|++||+++|+|+ .+++|....  ..
T Consensus        73 ~--Vys~~~~~Wr~~~~~~~-~~~--~~--~~~v~~~G~lyw~~~~~~~~~~~~IvsFDl~~E~f~~~i~~P~~~~~~~~  145 (230)
T TIGR01640        73 Q--VYTLGSNSWRTIECSPP-HHP--LK--SRGVCINGVLYYLAYTLKTNPDYFIVSFDVSSERFKEFIPLPCGNSDSVD  145 (230)
T ss_pred             E--EEEeCCCCccccccCCC-Ccc--cc--CCeEEECCEEEEEEEECCCCCcEEEEEEEcccceEeeeeecCcccccccc
Confidence            6  99999999999884332 111  11  349999999999986542 12 27999999999999 599997652  22


Q ss_pred             CCeEEEECCeEEEEEecCCCCeEEEEEEcC---CeeEEEEEEccC--Cce---eEEEEEeeCCcEEEEeeC--Ce-EEEE
Q 037345          255 NPILGVYDNSLHFLDFDRSESCFEKWVMKE---GSWTKQLSVGPI--LGV---LRALEFWKNGSFFIESNT--NQ-LLLY  323 (357)
Q Consensus       255 ~~~l~~~~g~L~l~~~~~~~~~~~iW~l~~---~~W~~~~~i~~~--~~~---~~~~~~~~~~~i~~~~~~--~~-~~~y  323 (357)
                      ...|++++|+|+++........++||+|++   .+|+|+++|+..  ..+   ..+.++.++|+|++...+  +. +++|
T Consensus       146 ~~~L~~~~G~L~~v~~~~~~~~~~IWvl~d~~~~~W~k~~~i~~~~~~~~~~~~~~~~~~~~g~I~~~~~~~~~~~~~~y  225 (230)
T TIGR01640       146 YLSLINYKGKLAVLKQKKDTNNFDLWVLNDAGKQEWSKLFTVPIPPLPDLVDDNFLSGFTDKGEIVLCCEDENPFYIFYY  225 (230)
T ss_pred             ceEEEEECCEEEEEEecCCCCcEEEEEECCCCCCceeEEEEEcCcchhhhhhheeEeEEeeCCEEEEEeCCCCceEEEEE
Confidence            367999999999999864445699999997   679999999842  122   347888889999998764  34 9999


Q ss_pred             ECCCC
Q 037345          324 DPNTR  328 (357)
Q Consensus       324 d~~t~  328 (357)
                      |++++
T Consensus       226 ~~~~~  230 (230)
T TIGR01640       226 NVGEN  230 (230)
T ss_pred             eccCC
Confidence            99975

This model describes a large family of plant domains, with several hundred members in Arabidopsis thaliana. Most examples are found C-terminal to an F-box (pfam00646), a 60 amino acid motif involved in ubiquitination of target proteins to mark them for degradation. Two-hybid experiments support the idea that most members are interchangeable F-box subunits of SCF E3 complexes. Some members have two copies of this domain.
>PF07734 FBA_1: F-box associated; InterPro: IPR006527 This domain occurs in a diverse superfamily of genes in plants Back     alignment and domain information
>PF08268 FBA_3: F-box associated domain; InterPro: IPR013187 This domain occurs in a diverse superfamily of genes in plants Back     alignment and domain information
>PLN03215 ascorbic acid mannose pathway regulator 1; Provisional Back     alignment and domain information
>PHA02713 hypothetical protein; Provisional Back     alignment and domain information
>PLN02153 epithiospecifier protein Back     alignment and domain information
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only] Back     alignment and domain information
>PLN02193 nitrile-specifier protein Back     alignment and domain information
>PHA03098 kelch-like protein; Provisional Back     alignment and domain information
>PF12937 F-box-like: F-box-like; PDB: 1P22_A 2OVP_B 2OVR_B 2OVQ_B 1FS1_A 1FS2_C 1FQV_I 1LDK_E 2AST_B 2ASS_B Back     alignment and domain information
>PHA02790 Kelch-like protein; Provisional Back     alignment and domain information
>PHA02713 hypothetical protein; Provisional Back     alignment and domain information
>PF00646 F-box: F-box domain; InterPro: IPR001810 The F-box domain was first described as a sequence motif found in cyclin-F that interacts with the protein SKP1 [, ] Back     alignment and domain information
>TIGR03547 muta_rot_YjhT mutatrotase, YjhT family Back     alignment and domain information
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only] Back     alignment and domain information
>smart00256 FBOX A Receptor for Ubiquitination Targets Back     alignment and domain information
>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein Back     alignment and domain information
>PRK14131 N-acetylneuraminic acid mutarotase; Provisional Back     alignment and domain information
>PHA03098 kelch-like protein; Provisional Back     alignment and domain information
>PHA02790 Kelch-like protein; Provisional Back     alignment and domain information
>PLN02153 epithiospecifier protein Back     alignment and domain information
>PLN02193 nitrile-specifier protein Back     alignment and domain information
>PRK14131 N-acetylneuraminic acid mutarotase; Provisional Back     alignment and domain information
>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein Back     alignment and domain information
>TIGR03547 muta_rot_YjhT mutatrotase, YjhT family Back     alignment and domain information
>KOG4693 consensus Uncharacterized conserved protein, contains kelch repeat [General function prediction only] Back     alignment and domain information
>KOG4693 consensus Uncharacterized conserved protein, contains kelch repeat [General function prediction only] Back     alignment and domain information
>KOG1230 consensus Protein containing repeated kelch motifs [General function prediction only] Back     alignment and domain information
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown] Back     alignment and domain information
>KOG0379 consensus Kelch repeat-containing proteins [General function prediction only] Back     alignment and domain information
>KOG0379 consensus Kelch repeat-containing proteins [General function prediction only] Back     alignment and domain information
>KOG1230 consensus Protein containing repeated kelch motifs [General function prediction only] Back     alignment and domain information
>KOG2997 consensus F-box protein FBX9 [General function prediction only] Back     alignment and domain information
>PF02191 OLF: Olfactomedin-like domain; InterPro: IPR003112 The olfactomedin-domain was first identified in olfactomedin, an extracellular matrix protein of the olfactory neuroepithelium [] Back     alignment and domain information
>TIGR01640 F_box_assoc_1 F-box protein interaction domain Back     alignment and domain information
>PF13964 Kelch_6: Kelch motif Back     alignment and domain information
>smart00284 OLF Olfactomedin-like domains Back     alignment and domain information
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species Back     alignment and domain information
>KOG4152 consensus Host cell transcription factor HCFC1 [Cell cycle control, cell division, chromosome partitioning; Transcription] Back     alignment and domain information
>COG3055 Uncharacterized protein conserved in bacteria [Function unknown] Back     alignment and domain information
>PF01344 Kelch_1: Kelch motif; InterPro: IPR006652 Kelch is a 50-residue motif, named after the Drosophila mutant in which it was first identified [] Back     alignment and domain information
>KOG2055 consensus WD40 repeat protein [General function prediction only] Back     alignment and domain information
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families Back     alignment and domain information
>PF13964 Kelch_6: Kelch motif Back     alignment and domain information
>PF07646 Kelch_2: Kelch motif; InterPro: IPR011498 Kelch is a 50-residue motif, named after the Drosophila mutant in which it was first identified [] Back     alignment and domain information
>COG4257 Vgb Streptogramin lyase [Defense mechanisms] Back     alignment and domain information
>PF07250 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterPro: IPR009880 This entry represents the N terminus (approximately 300 residues) of a number of plant and fungal glyoxal oxidase enzymes Back     alignment and domain information
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only] Back     alignment and domain information
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A Back     alignment and domain information
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown] Back     alignment and domain information
>PF07762 DUF1618: Protein of unknown function (DUF1618); InterPro: IPR011676 The proteins of this entry are mainly hypothetical proteins expressed by Oryza sativa Back     alignment and domain information
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A Back     alignment and domain information
>KOG4341 consensus F-box protein containing LRR [General function prediction only] Back     alignment and domain information
>COG4257 Vgb Streptogramin lyase [Defense mechanisms] Back     alignment and domain information
>KOG3545 consensus Olfactomedin and related extracellular matrix glycoproteins [Extracellular structures] Back     alignment and domain information
>PRK11138 outer membrane biogenesis protein BamB; Provisional Back     alignment and domain information
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL Back     alignment and domain information
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1 Back     alignment and domain information
>COG3055 Uncharacterized protein conserved in bacteria [Function unknown] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query357
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 8e-09
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 2e-05
2e31_A297 FBS1, F-box only protein 2; ubiquitin, SCF, ubiqui 7e-05
2ast_B336 S-phase kinase-associated protein 2; SCF-substrate 1e-04
1fs1_A53 SKP2 F-BOX, cyclin A/CDK2-associated P19; F-BOX, L 8e-04
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
 Score = 56.4 bits (135), Expect = 8e-09
 Identities = 63/386 (16%), Positives = 124/386 (32%), Gaps = 96/386 (24%)

Query: 6   DFSEDLLI-------EILSRLPV--KSLM--RYKFVCRFWCALIKSPRFVSRHIINYNDD 54
            +   LL+       +  +   +  K L+  R+K V  F  A   +   +  H +    D
Sbjct: 242 PYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPD 301

Query: 55  NTRLVVEKVPGYDEG--PPYVLFHDETLVDLSNDERFEPPTRHDHELLGNCNGLFCLHDK 112
             + ++ K         P  VL  +   + +  +   +     D+    NC+ L      
Sbjct: 302 EVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKL-----T 356

Query: 113 NSNRISIWNLATREFRALPKWKGEIPRHKWVYQLNFGFELDSSSNDYKIIFILNLTDDNT 172
                S+  L   E+R +                            +  + +        
Sbjct: 357 TIIESSLNVLEPAEYRKM----------------------------FDRLSVF------- 381

Query: 173 RKDSVSTEVILHTLSTDSWRYLK-------ANELSDYSFLGGQQSENTYLDRICYWIAWR 225
              +    ++L  +    W  +         N+L  YS +  Q  E+T    I   I   
Sbjct: 382 PPSAHIPTILLSLI----WFDVIKSDVMVVVNKLHKYSLVEKQPKESTI--SI-PSIYLE 434

Query: 226 YN-NCQEILSFHMR-DEAFHVIKCPDNSYFPNPILGVYDNSL---HFLDFDRSE--SCFE 278
                +   + H    + +++ K  D+     P L  Y  S    H  + +  E  + F 
Sbjct: 435 LKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFR 494

Query: 279 K------WVMK--EGSWTKQLSVGPILGVLRALEFWKNGSFFIESNTNQLLLYDPNTRAL 330
                  ++ +      T   + G IL  L+ L+F+K    +I  N  +   Y+    A+
Sbjct: 495 MVFLDFRFLEQKIRHDSTAWNASGSILNTLQQLKFYKP---YICDNDPK---YERLVNAI 548

Query: 331 RDVGLGTDGLFLHRYKESLISTEWED 356
            D        FL + +E+LI +++ D
Sbjct: 549 LD--------FLPKIEENLICSKYTD 566
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>2e31_A FBS1, F-box only protein 2; ubiquitin, SCF, ubiquitin ligase, FBS1; 2.40A {Mus musculus} PDB: 2e32_A Length = 297 Back     alignment and structure
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A Length = 336 Back     alignment and structure
>1fs1_A SKP2 F-BOX, cyclin A/CDK2-associated P19; F-BOX, LRR, leucine-rich repeat, SCF, ubiquitin, ubiquitin protein ligase; 1.80A {Homo sapiens} SCOP: a.158.1.1 PDB: 1ldk_E Length = 53 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query357
4asc_A315 Kelch repeat and BTB domain-containing protein 5; 99.24
3ii7_A306 Kelch-like protein 7; protein-binding, kelch-repea 99.18
2woz_A318 Kelch repeat and BTB domain-containing protein 10; 99.15
1zgk_A308 Kelch-like ECH-associated protein 1; beta-propelle 99.15
2vpj_A301 Kelch-like protein 12; adaptor protein, WNT signal 99.13
2xn4_A302 Kelch-like protein 2; structural protein, cytoskel 99.13
1fs1_A53 SKP2 F-BOX, cyclin A/CDK2-associated P19; F-BOX, L 99.11
2e31_A297 FBS1, F-box only protein 2; ubiquitin, SCF, ubiqui 99.11
3ii7_A306 Kelch-like protein 7; protein-binding, kelch-repea 99.03
2vpj_A301 Kelch-like protein 12; adaptor protein, WNT signal 99.0
2uvk_A357 YJHT; unknown function, hypothetical protein, sial 98.98
4asc_A315 Kelch repeat and BTB domain-containing protein 5; 98.96
1zgk_A308 Kelch-like ECH-associated protein 1; beta-propelle 98.93
2xn4_A302 Kelch-like protein 2; structural protein, cytoskel 98.92
2zwa_A695 Leucine carboxyl methyltransferase 2; HET: SAH CIT 98.83
2woz_A318 Kelch repeat and BTB domain-containing protein 10; 98.83
2uvk_A357 YJHT; unknown function, hypothetical protein, sial 98.73
2ovr_B445 FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 98.72
3v7d_B464 Cell division control protein 4; WD 40 domain, pho 98.63
1p22_A435 F-BOX/WD-repeat protein 1A; ubiquitination, degrad 98.55
1k3i_A 656 Galactose oxidase precursor; blade beta propeller, 98.14
1k3i_A 656 Galactose oxidase precursor; blade beta propeller, 98.06
2zwa_A695 Leucine carboxyl methyltransferase 2; HET: SAH CIT 97.91
3l2o_B312 F-box only protein 4; small G protein fold, UBL co 97.72
2ast_B336 S-phase kinase-associated protein 2; SCF-substrate 97.57
2p1m_B 594 Transport inhibitor response 1 protein; F-BOX, leu 97.01
2z2n_A299 Virginiamycin B lyase; seven-bladed beta-propeller 96.67
3ogk_B 592 Coronatine-insensitive protein 1; leucine rich rep 96.54
1q7f_A286 NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL 95.5
3jrp_A 379 Fusion protein of protein transport protein SEC13 93.44
1q7f_A286 NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL 93.42
3jro_A 753 Fusion protein of protein transport protein SEC13 93.19
3mbr_X243 Glutamine cyclotransferase; beta-propeller; 1.44A 92.91
2qc5_A300 Streptogramin B lactonase; beta propeller, lyase; 92.89
2z2n_A299 Virginiamycin B lyase; seven-bladed beta-propeller 92.15
3e5z_A296 Putative gluconolactonase; X-RAY NESG Q9RXN3 gluco 91.51
3dsm_A328 Uncharacterized protein bacuni_02894; seven_blated 90.99
2qc5_A300 Streptogramin B lactonase; beta propeller, lyase; 89.79
1rwi_B270 Serine/threonine-protein kinase PKND; beta propell 89.73
3q7m_A 376 Lipoprotein YFGL, BAMB; beta-propeller, BAM comple 88.36
3nol_A262 Glutamine cyclotransferase; beta-propeller, glutam 88.1
4gga_A420 P55CDC, cell division cycle protein 20 homolog; ce 87.62
2iwa_A266 Glutamine cyclotransferase; pyroglutamate, acyltra 87.48
3u4y_A331 Uncharacterized protein; structural genomics, PSI- 87.39
3q7m_A 376 Lipoprotein YFGL, BAMB; beta-propeller, BAM comple 87.31
3hfq_A 347 Uncharacterized protein LP_2219; Q88V64_lacpl, NES 86.96
3e5z_A296 Putative gluconolactonase; X-RAY NESG Q9RXN3 gluco 86.23
3scy_A361 Hypothetical bacterial 6-phosphogluconolactonase; 85.71
3dsm_A328 Uncharacterized protein bacuni_02894; seven_blated 85.52
3hfq_A347 Uncharacterized protein LP_2219; Q88V64_lacpl, NES 84.71
4e54_B435 DNA damage-binding protein 2; beta barrel, double 83.82
3nok_A268 Glutaminyl cyclase; beta-propeller, cyclotransfera 83.44
1k8k_C 372 P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta- 83.32
4e54_B435 DNA damage-binding protein 2; beta barrel, double 80.97
3dwl_C 377 Actin-related protein 2/3 complex subunit 1; prope 80.93
>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens} Back     alignment and structure
Probab=99.24  E-value=5.2e-09  Score=93.27  Aligned_cols=193  Identities=9%  Similarity=-0.015  Sum_probs=124.7

Q ss_pred             EEEEeccccchhcCCCCCCCCCCccccccceeEEeeeCCCCCeEEEEEEEecCCCCCCCCcceEEEEEEcCCCceeeccc
Q 037345          117 ISIWNLATREFRALPKWKGEIPRHKWVYQLNFGFELDSSSNDYKIIFILNLTDDNTRKDSVSTEVILHTLSTDSWRYLKA  196 (357)
Q Consensus       117 ~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~lg~d~~~~~ykvv~~~~~~~~~~~~~~~~~~~~vyss~t~~W~~~~~  196 (357)
                      ++++||.|++|..+|+.|..+..        ......  .+  +++.+..............++  +|+..+++|+.++.
T Consensus        69 ~~~~d~~~~~W~~~~~~p~~r~~--------~~~~~~--~~--~lyv~GG~~~~~~~~~~~~~~--~~d~~~~~W~~~~~  134 (315)
T 4asc_A           69 FLQFDHLDSEWLGMPPLPSPRCL--------FGLGEA--LN--SIYVVGGREIKDGERCLDSVM--CYDRLSFKWGESDP  134 (315)
T ss_dssp             EEEEETTTTEEEECCCBSSCEES--------CEEEEE--TT--EEEEECCEESSTTCCBCCCEE--EEETTTTEEEECCC
T ss_pred             eEEecCCCCeEEECCCCCcchhc--------eeEEEE--CC--EEEEEeCCcCCCCCcccceEE--EECCCCCcEeECCC
Confidence            78999999999999987753221        111111  11  344443322101112334566  99999999999875


Q ss_pred             CCcccccccCCCCCcceEECceEEEEEccCC---CcCEEEEEECCCcceeEec-CCCCCCCCCCeEEEECCeEEEEEecC
Q 037345          197 NELSDYSFLGGQQSENTYLDRICYWIAWRYN---NCQEILSFHMRDEAFHVIK-CPDNSYFPNPILGVYDNSLHFLDFDR  272 (357)
Q Consensus       197 ~~~~~~~~~~~~~~~~v~~~G~lyw~~~~~~---~~~~i~~fD~~~e~~~~i~-lP~~~~~~~~~l~~~~g~L~l~~~~~  272 (357)
                      .+. +...     ...+.++|.+|.+.+...   ....+..||+.+++|+.++ +|..  ......+..+|+|+++....
T Consensus       135 ~p~-~r~~-----~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~--r~~~~~~~~~~~iyv~GG~~  206 (315)
T 4asc_A          135 LPY-VVYG-----HTVLSHMDLVYVIGGKGSDRKCLNKMCVYDPKKFEWKELAPMQTA--RSLFGATVHDGRIIVAAGVT  206 (315)
T ss_dssp             CSS-CCBS-----CEEEEETTEEEEECCBCTTSCBCCCEEEEETTTTEEEECCCCSSC--CBSCEEEEETTEEEEEEEEC
T ss_pred             CCC-cccc-----eeEEEECCEEEEEeCCCCCCcccceEEEEeCCCCeEEECCCCCCc--hhceEEEEECCEEEEEeccC
Confidence            433 2111     567789999999987521   2357999999999999875 4433  23346778899999998754


Q ss_pred             CC-CeEEEEEEcC--CeeEEEEEEccCCceeEEEEEeeCCcEEEEeeC---------------CeEEEEECCCCcEEEe
Q 037345          273 SE-SCFEKWVMKE--GSWTKQLSVGPILGVLRALEFWKNGSFFIESNT---------------NQLLLYDPNTRALRDV  333 (357)
Q Consensus       273 ~~-~~~~iW~l~~--~~W~~~~~i~~~~~~~~~~~~~~~~~i~~~~~~---------------~~~~~yd~~t~~~~~v  333 (357)
                      .. ..-.+|.++-  .+|.....++.  .......+..++.++++...               ..+..||+++++|+++
T Consensus       207 ~~~~~~~~~~yd~~~~~W~~~~~~p~--~r~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~~~~~~v~~yd~~~~~W~~~  283 (315)
T 4asc_A          207 DTGLTSSAEVYSITDNKWAPFEAFPQ--ERSSLSLVSLVGTLYAIGGFATLETESGELVPTELNDIWRYNEEEKKWEGV  283 (315)
T ss_dssp             SSSEEEEEEEEETTTTEEEEECCCSS--CCBSCEEEEETTEEEEEEEEEEEECTTSCEEEEEEEEEEEEETTTTEEEEE
T ss_pred             CCCccceEEEEECCCCeEEECCCCCC--cccceeEEEECCEEEEECCccccCcCCccccccccCcEEEecCCCChhhhh
Confidence            32 3446788776  89998754432  12222223346677776431               3588999999999999
>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens} Back     alignment and structure
>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus} Back     alignment and structure
>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A Back     alignment and structure
>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens} Back     alignment and structure
>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens} Back     alignment and structure
>1fs1_A SKP2 F-BOX, cyclin A/CDK2-associated P19; F-BOX, LRR, leucine-rich repeat, SCF, ubiquitin, ubiquitin protein ligase; 1.80A {Homo sapiens} SCOP: a.158.1.1 PDB: 1ldk_E Back     alignment and structure
>2e31_A FBS1, F-box only protein 2; ubiquitin, SCF, ubiquitin ligase, FBS1; 2.40A {Mus musculus} PDB: 2e32_A Back     alignment and structure
>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens} Back     alignment and structure
>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens} Back     alignment and structure
>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli} Back     alignment and structure
>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens} Back     alignment and structure
>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A Back     alignment and structure
>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens} Back     alignment and structure
>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A* Back     alignment and structure
>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus} Back     alignment and structure
>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli} Back     alignment and structure
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B* Back     alignment and structure
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B* Back     alignment and structure
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 Back     alignment and structure
>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A Back     alignment and structure
>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A Back     alignment and structure
>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A* Back     alignment and structure
>3l2o_B F-box only protein 4; small G protein fold, UBL conjugation pathway, ubiquitin Pro ligase, protein binding-cell cycle complex; 2.80A {Homo sapiens} Back     alignment and structure
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A Back     alignment and structure
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* Back     alignment and structure
>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A* Back     alignment and structure
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* Back     alignment and structure
>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1 Back     alignment and structure
>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae} Back     alignment and structure
>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1 Back     alignment and structure
>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae} Back     alignment and structure
>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris} Back     alignment and structure
>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii} Back     alignment and structure
>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A* Back     alignment and structure
>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans} Back     alignment and structure
>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis} Back     alignment and structure
>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii} Back     alignment and structure
>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A Back     alignment and structure
>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A Back     alignment and structure
>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A Back     alignment and structure
>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A Back     alignment and structure
>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A* Back     alignment and structure
>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans} Back     alignment and structure
>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A Back     alignment and structure
>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum} Back     alignment and structure
>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans} Back     alignment and structure
>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A Back     alignment and structure
>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis} Back     alignment and structure
>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum} Back     alignment and structure
>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B* Back     alignment and structure
>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus} Back     alignment and structure
>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C Back     alignment and structure
>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B* Back     alignment and structure
>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 357
d1fs1a141 a.158.1.1 (A:109-149) Skp2 {Human (Homo sapiens) [ 8e-07
d1p22a1118 a.158.1.1 (A:135-252) F-box/WD-repeat protein 1 (b 0.001
d2ovrb1102 a.158.1.1 (B:2263-2364) F-box/WD repeat-containing 0.003
>d1fs1a1 a.158.1.1 (A:109-149) Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 41 Back     information, alignment and structure

class: All alpha proteins
fold: F-box domain
superfamily: F-box domain
family: F-box domain
domain: Skp2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.1 bits (102), Expect = 8e-07
 Identities = 11/39 (28%), Positives = 18/39 (46%)

Query: 5  DDFSEDLLIEILSRLPVKSLMRYKFVCRFWCALIKSPRF 43
          D   ++LL+ I S L +  L++   VC+ W  L      
Sbjct: 2  DSLPDELLLGIFSCLCLPELLKVSGVCKRWYRLASDESL 40
>d1p22a1 a.158.1.1 (A:135-252) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 118 Back     information, alignment and structure
>d2ovrb1 a.158.1.1 (B:2263-2364) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 102 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query357
d1fs1a141 Skp2 {Human (Homo sapiens) [TaxId: 9606]} 99.25
d2ovrb1102 F-box/WD repeat-containing protein 7, FBXW7 {Human 98.64
d1nexb1100 Cdc4 F-box and linker domains {Baker's yeast (Sacc 98.52
d1zgka1288 Kelch-like ECH-associated protein 1, KEAP1 {Human 98.41
d1zgka1288 Kelch-like ECH-associated protein 1, KEAP1 {Human 98.4
d1p22a1118 F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom 98.16
d1k3ia3 387 Galactose oxidase, central domain {Fungi (Fusarium 97.87
d1k3ia3 387 Galactose oxidase, central domain {Fungi (Fusarium 97.75
d1q7fa_279 Brain tumor cg10719-pa {Fruit fly (Drosophila mela 95.16
d2ghsa1295 Regucalcin {Agrobacterium tumefaciens [TaxId: 358] 92.27
d2dg1a1319 Lactonase Drp35 {Staphylococcus aureus [TaxId: 128 88.06
d1kv9a2 560 Quinoprotein alcohol dehydrogenase, N-terminal dom 84.03
d2ghsa1 295 Regucalcin {Agrobacterium tumefaciens [TaxId: 358] 82.42
d2dg1a1 319 Lactonase Drp35 {Staphylococcus aureus [TaxId: 128 80.7
d1k8kc_ 371 Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur 80.2
>d1fs1a1 a.158.1.1 (A:109-149) Skp2 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
class: All alpha proteins
fold: F-box domain
superfamily: F-box domain
family: F-box domain
domain: Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.25  E-value=1.8e-12  Score=76.24  Aligned_cols=39  Identities=28%  Similarity=0.575  Sum_probs=36.7

Q ss_pred             CCCcHHHHHHHHhcCCccccchhhcchHhHHhhcCChHH
Q 037345            5 DDFSEDLLIEILSRLPVKSLMRYKFVCRFWCALIKSPRF   43 (357)
Q Consensus         5 ~~LP~Dll~~IL~rLP~~sl~r~r~VcK~W~~li~~p~F   43 (357)
                      ..||+|++.+||++||++++.|+++|||+|+.++.++.+
T Consensus         2 ~~LP~eil~~If~~L~~~dl~~~~~Vcr~w~~l~~~~~l   40 (41)
T d1fs1a1           2 DSLPDELLLGIFSCLCLPELLKVSGVCKRWYRLASDESL   40 (41)
T ss_dssp             CSSCHHHHHHHHTTSCGGGHHHHHTTCHHHHHHHTCGGG
T ss_pred             CcCCHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCccc
Confidence            579999999999999999999999999999999998763
>d2ovrb1 a.158.1.1 (B:2263-2364) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1nexb1 a.158.1.1 (B:270-369) Cdc4 F-box and linker domains {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1zgka1 b.68.11.1 (A:322-609) Kelch-like ECH-associated protein 1, KEAP1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1zgka1 b.68.11.1 (A:322-609) Kelch-like ECH-associated protein 1, KEAP1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1p22a1 a.158.1.1 (A:135-252) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]} Back     information, alignment and structure
>d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]} Back     information, alignment and structure
>d1q7fa_ b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Back     information, alignment and structure
>d2ghsa1 b.68.6.1 (A:20-314) Regucalcin {Agrobacterium tumefaciens [TaxId: 358]} Back     information, alignment and structure
>d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus [TaxId: 1280]} Back     information, alignment and structure
>d1kv9a2 b.70.1.1 (A:1-560) Quinoprotein alcohol dehydrogenase, N-terminal domain {Pseudomonas putida, hk5 [TaxId: 303]} Back     information, alignment and structure
>d2ghsa1 b.68.6.1 (A:20-314) Regucalcin {Agrobacterium tumefaciens [TaxId: 358]} Back     information, alignment and structure
>d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus [TaxId: 1280]} Back     information, alignment and structure
>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure