Citrus Sinensis ID: 037346
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
ID ![]() | Alignment graph ![]() | Length ![]() |
Definition ![]() |
RBH(Q2H) ![]() |
RBH(H2Q) ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 1156 | 2.2.26 [Sep-21-2011] | |||||||
| Q9LK64 | 1514 | ABC transporter C family | yes | no | 0.993 | 0.758 | 0.628 | 0.0 | |
| Q9LK62 | 1493 | ABC transporter C family | no | no | 0.983 | 0.761 | 0.581 | 0.0 | |
| Q8VZZ4 | 1466 | ABC transporter C family | no | no | 0.982 | 0.774 | 0.578 | 0.0 | |
| Q7GB25 | 1514 | ABC transporter C family | no | no | 0.993 | 0.758 | 0.484 | 0.0 | |
| Q9M1C7 | 1506 | ABC transporter C family | no | no | 0.990 | 0.760 | 0.465 | 0.0 | |
| Q7FB56 | 1053 | Putative ABC transporter | no | no | 0.805 | 0.884 | 0.481 | 0.0 | |
| Q7DM58 | 1516 | ABC transporter C family | no | no | 0.986 | 0.751 | 0.392 | 0.0 | |
| Q9LZJ5 | 1539 | ABC transporter C family | no | no | 0.985 | 0.740 | 0.378 | 0.0 | |
| Q9LYS2 | 1453 | ABC transporter C family | no | no | 0.969 | 0.771 | 0.394 | 0.0 | |
| Q8LGU1 | 1464 | ABC transporter C family | no | no | 0.975 | 0.770 | 0.395 | 0.0 |
| >sp|Q9LK64|AB3C_ARATH ABC transporter C family member 3 OS=Arabidopsis thaliana GN=ABCC3 PE=1 SV=1 | Back alignment and function desciption |
|---|
Score = 1569 bits (4062), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 799/1272 (62%), Positives = 961/1272 (75%), Gaps = 123/1272 (9%)
Query: 3 TPYSNAGLFSIRSFSWMGSLIALGNKRTLDLEDVPRLDCSDSIYGVSPVLQNKLEAVVGV 62
TPYS AG+ S+ +FSWM LI +GNK+TLDLEDVP+L +DS+ G++P ++ LE+ G
Sbjct: 244 TPYSRAGILSLLTFSWMSPLIDIGNKKTLDLEDVPQLHDTDSVVGLAPKFRSMLESPDGG 303
Query: 63 ANR-LTALRLAKVLFFSAWQEILFIAILALLYTLATYVGPYLIDNFVQYLNGRQAFEYEG 121
+T +L K L+F+A EIL A A +YT+A+YVGP LID FVQYLNGR+ + +EG
Sbjct: 304 ERSGVTTFKLIKALYFTAQWEILVTAFFAFIYTVASYVGPALIDTFVQYLNGRRQYNHEG 363
Query: 122 YVL-----------CLSERHWFFQVQQFGIRFRATLFAMIYNKGLTLSGQAKQGNTSGEI 170
YVL CLS+RHWFF++Q+ GIR R+ L AMIY KGLTLS Q+KQG TSGEI
Sbjct: 364 YVLVITFFAAKIVECLSQRHWFFRLQKVGIRMRSALVAMIYEKGLTLSCQSKQGRTSGEI 423
Query: 171 INLIAVDAER--------------------ALLILYKKLGLASIATLLATAIVMLANFPL 210
IN + VDAER AL ILY+ LGLASIA L+AT IVML NFP
Sbjct: 424 INFMTVDAERIGNFSWYMHDPWMVLLQVGLALWILYRNLGLASIAALVATIIVMLINFPF 483
Query: 211 GRLREKFQDKFMETKDRRIKATSEILRNMRILKLQGWELK---------KNETAWLKKSV 261
GR++E+FQ+K ME KD R+K+TSEILRNMRILKLQGWE+K K+E WLKK V
Sbjct: 484 GRMQERFQEKLMEAKDSRMKSTSEILRNMRILKLQGWEMKFLSKIFDLRKSEEGWLKKYV 543
Query: 262 YTEAMISFFCWGAPTFVSVVTFGSCILLGIPLESGMILSALTTFKILQEPIYYLPESISM 321
Y A+ISF WGAPT VSV TFG+CILLGIPLESG ILSAL TF+ILQEPIY LP++ISM
Sbjct: 544 YNSAVISFVFWGAPTLVSVSTFGACILLGIPLESGKILSALATFRILQEPIYNLPDTISM 603
Query: 322 MIQAKVPLDRIASFLCLEGLQTDVLEKMPRGNSDTAIEIIDGSFSWDFSSPNPTLRNINL 381
++Q KV LDR+AS+LCL+ LQ D++E++P+G+SD A+E+I+ + SWD SS NPTL++IN
Sbjct: 604 IVQTKVSLDRLASYLCLDNLQPDIVERLPKGSSDVAVEVINSTLSWDVSSSNPTLKDINF 663
Query: 382 KVFHGMRVAVCGTVGSGKSSCLSCILGGVPKESGIIRLCGTKAYVAQSPWIQSGKIEENI 441
KVF GM+VAVCGTVGSGKSS LS +LG VPK SG +++CGTKAYVAQSPWIQSGKIE+NI
Sbjct: 664 KVFPGMKVAVCGTVGSGKSSLLSSLLGEVPKVSGSLKVCGTKAYVAQSPWIQSGKIEDNI 723
Query: 442 LFGKEMDRERYERVLEACSLKKDLEVLPFGDQTIIGERGINLSGGQKQRIQIARPLYQDA 501
LFGK M+RERY++VLEACSL KDLE+L FGDQT+IGERGINLSGGQKQRIQIAR LYQDA
Sbjct: 724 LFGKPMERERYDKVLEACSLSKDLEILSFGDQTVIGERGINLSGGQKQRIQIARALYQDA 783
Query: 502 DIFLLDDPFSPVDDHTGAHLFK--FCWVSSSKTVIYATHQVEFLPAADLILVIKDGKITQ 559
DI+L DDPFS VD HTG+HLFK + SK+VIY THQVEFLPAADLILV+KDG+I+Q
Sbjct: 784 DIYLFDDPFSAVDAHTGSHLFKEVLLGLLCSKSVIYVTHQVEFLPAADLILVMKDGRISQ 843
Query: 560 AGKYSDILNSGTDFMELVGAHKQALSGLDSIDRGPVSERKSINKENDGTSTTNEIVNKEE 619
AGKY+DILNSGTDFMEL+GAH++AL+ +DS+D VSE+ ++ +EN + K E
Sbjct: 844 AGKYNDILNSGTDFMELIGAHQEALAVVDSVDANSVSEKSALGQENVIVKDAIAVDEKLE 903
Query: 620 NKNFQSDD-EAALPKGQLVQEEEREKGKVGFSVYWKYMTTAYGGVLVPFILLAQIIFQIF 678
+++ ++D E+ P+ Q++QEEEREKG V VYWKY+T AYGG LVPFILL Q++FQ+
Sbjct: 904 SQDLKNDKLESVEPQRQIIQEEEREKGSVALDVYWKYITLAYGGALVPFILLGQVLFQLL 963
Query: 679 QIGSNYWMAWATPVAKDVNPAVGASTLIIVYVG------------------AGYKTATQL 720
QIGSNYWMAWATPV++DV V STL+IVYV AGYKTAT+L
Sbjct: 964 QIGSNYWMAWATPVSEDVQAPVKLSTLMIVYVALAFGSSLCILLRATLLVTAGYKTATEL 1023
Query: 721 FNKMHVCIFRAPMYFFDSTPSGRILNRVSENVKWADQSAADMDIPYDIGAFAFSMIQLLG 780
F+KMH CIFR+PM FFDSTPSGRI++R S DQSA D+++PY G+ A ++IQL+G
Sbjct: 1024 FHKMHHCIFRSPMSFFDSTPSGRIMSRAS-----TDQSAVDLELPYQFGSVAITVIQLIG 1078
Query: 781 IIVVMSLVAWQVLIVFVPVIATFIWYQQYYITSTRELSRLIGVCKAPVIQQFSETISGST 840
II VMS V+W V +VF+PV+A IWYQ+YYI + RELSRL+GVCKAP+IQ FSETISG+T
Sbjct: 1079 IIGVMSQVSWLVFLVFIPVVAASIWYQRYYIAAARELSRLVGVCKAPLIQHFSETISGAT 1138
Query: 841 TIRSLDQELRFRDTNMKLIDEYSRPKFHIAGAMEWLRFCIDMLSSITFAFSLAFLISVPN 900
TIRS QE RFR NM+L D YSRPKF+ AGAMEWL F +DMLSS+TF FSL FL+S+P
Sbjct: 1139 TIRSFSQEFRFRSDNMRLSDGYSRPKFYTAGAMEWLCFRLDMLSSLTFVFSLVFLVSIPT 1198
Query: 901 GIIHP-----------------------YKNLERKIISVERILQCACIPSEPALVIEATK 937
G+I P NLE KIISVERILQ A +PSEP LVIE+ +
Sbjct: 1199 GVIDPSLAGLAVTYGLSLNTLQAWLIWTLCNLENKIISVERILQYASVPSEPPLVIESNR 1258
Query: 938 PNNSRPSHGEVNIRHLQVRYAPNLPLVLR---------------GRTGSGKSTLIQTLFR 982
P S PS GEV IR LQVRYAP++PLVLR GRTGSGKSTLIQTLFR
Sbjct: 1259 PEQSWPSRGEVEIRDLQVRYAPHMPLVLRGITCTFKGGLRTGIVGRTGSGKSTLIQTLFR 1318
Query: 983 IVESTAGHILIDGKDISLIGLHDLRTRLSIIPQDPTMFEGTTRSNLDPLEEHADEQIWEA 1042
IVE +AG I IDG +I IGLHDLR RLSIIPQDPTMFEGT RSNLDPLEE+ D+QIWEA
Sbjct: 1319 IVEPSAGEIRIDGVNILTIGLHDLRLRLSIIPQDPTMFEGTMRSNLDPLEEYTDDQIWEA 1378
Query: 1043 LDKCQLGDEVRKKKGKLDSQ------------------GRVLLKKSKVLVLDEATASVDT 1084
LDKCQLGDEVRKK+ KLDS GRVLLK+SK+LVLDEATASVDT
Sbjct: 1379 LDKCQLGDEVRKKEQKLDSSVSENGDNWSMGQRQLVCLGRVLLKRSKILVLDEATASVDT 1438
Query: 1085 ATDNQIQQTLRQHFSDCTVVTIAHRITSVLDSAMVLLLNHGLIKEYDSPTKLLENKSSSF 1144
ATDN IQ+TLR+HFSDCTV+TIAHRI+SV+DS MVLLL++G+I+EYD+P +LLE+KSSSF
Sbjct: 1439 ATDNLIQKTLREHFSDCTVITIAHRISSVIDSDMVLLLSNGIIEEYDTPVRLLEDKSSSF 1498
Query: 1145 AQLVAEYTSSSS 1156
++LVAEYTS SS
Sbjct: 1499 SKLVAEYTSRSS 1510
|
Pump for glutathione S-conjugates. Mediates the transport of glutathione conjugates such as chlorodinitrobenzene-GS (DNB-GS), and of chlorophyll catabolites such as Bn-NCC-1. Transports also heavy metals such as cadmium (Cd). Arabidopsis thaliana (taxid: 3702) EC: 3EC: .EC: 6EC: .EC: 3EC: .EC: 4EC: 4 |
| >sp|Q9LK62|AB7C_ARATH ABC transporter C family member 7 OS=Arabidopsis thaliana GN=ABCC7 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 1412 bits (3656), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 739/1270 (58%), Positives = 900/1270 (70%), Gaps = 133/1270 (10%)
Query: 2 VTPYSNAGLFSIRSFSWMGSLIALGNKRTLDLEDVPRLDCSDSIYGVSPVLQNKLEAVVG 61
VTP+SNAG S SFSWM LI LGN++ +D EDVP++D SD + + ++KLE G
Sbjct: 229 VTPFSNAGFLSHVSFSWMSPLIVLGNEKIIDSEDVPQVDNSDRAEKLFWIFRSKLEWDDG 288
Query: 62 VANRLTALRLAKVLFFSAWQEILFIAILALLYTLATYVGPYLIDNFVQYLNGRQAFEYEG 121
R+T +L K LFFS W++IL + A +YT++ YV PYL+D FVQYLNG++ + +G
Sbjct: 289 -ERRITTYKLIKALFFSVWRDILLSTLFAFVYTVSCYVAPYLMDTFVQYLNGQRQYSNQG 347
Query: 122 YVL-----------CLSERHWFFQVQQFGIRFRATLFAMIYNKGLTLSGQAKQGNTSGEI 170
VL C + R+W+F++Q+ GI R+ L +MIY KGLTL +KQG+TSGEI
Sbjct: 348 VVLVTTFFVAKLVECQARRNWYFRLQKAGIGMRSVLVSMIYEKGLTLPCYSKQGHTSGEI 407
Query: 171 INLIAVDAER--------------------ALLILYKKLGLASIATLLATAIVMLANFPL 210
INL+ VDAER ALLILY+ LGL SIA AT +VML N PL
Sbjct: 408 INLMTVDAERISAFSWYMHDPWILVLQISLALLILYRSLGLGSIAAFAATFLVMLGNIPL 467
Query: 211 GRLREKFQDKFMETKDRRIKATSEILRNMRILKLQGWELK---------KNETAWLKKSV 261
+L EKFQ ME+KD R+K TSE L NMRILKLQGWE+K E WLKK V
Sbjct: 468 AKLEEKFQGNLMESKDNRMKKTSEALLNMRILKLQGWEMKFLHKILDLRGIEAGWLKKFV 527
Query: 262 YTEAMISFFCWGAPTFVSVVTFGSCILLGIPLESGMILSALTTFKILQEPIYYLPESISM 321
Y A IS W AP+FVS FG+C+LL IPLESG I++AL TF+ILQ PIY LP++ISM
Sbjct: 528 YNSAAISSVLWAAPSFVSATAFGACMLLKIPLESGKIIAALATFRILQTPIYKLPDTISM 587
Query: 322 MIQAKVPLDRIASFLCLEGLQTDVLEKMPRGNSDTAIEIIDGSFSWDFSSPNPTLRNINL 381
++Q KV LDRIA+FLCL+ LQ D +E++P G+S +E+ +G+FSWD SSP PTL++I
Sbjct: 588 IVQTKVSLDRIATFLCLDDLQQDGMERLPSGSSKMDVEVSNGAFSWDDSSPIPTLKDIRF 647
Query: 382 KVFHGMRVAVCGTVGSGKSSCLSCILGGVPKESGIIRLCGTKAYVAQSPWIQSGKIEENI 441
K+ HGM +A+CGTVGSGKSS LS ILG VPK SG +++CG KAY+AQSPWIQSGK+EENI
Sbjct: 648 KIPHGMNIAICGTVGSGKSSLLSSILGEVPKISGNLKVCGRKAYIAQSPWIQSGKVEENI 707
Query: 442 LFGKEMDRERYERVLEACSLKKDLEVLPFGDQTIIGERGINLSGGQKQRIQIARPLYQDA 501
LFGK M RE Y+RVLEACSL KDLEV PF DQT+IGERGINLSGGQKQRIQIAR LYQDA
Sbjct: 708 LFGKPMQREWYQRVLEACSLNKDLEVFPFRDQTVIGERGINLSGGQKQRIQIARALYQDA 767
Query: 502 DIFLLDDPFSPVDDHTGAHLFK--FCWVSSSKTVIYATHQVEFLPAADLILVIKDGKITQ 559
DI+L DDPFS VD HTG+HLFK + +KTVIY THQ+EFLP ADLILV+KDG+ITQ
Sbjct: 768 DIYLFDDPFSAVDAHTGSHLFKEVLLGLLRNKTVIYVTHQLEFLPEADLILVMKDGRITQ 827
Query: 560 AGKYSDILNSGTDFMELVGAHKQALSGLDSIDRGPVSERKSINKENDGTSTTNEIVNKEE 619
AGKY++IL SGTDFMELVGAH AL+ +DS ++G S + + +KE +++ N EE
Sbjct: 828 AGKYNEILESGTDFMELVGAHTDALAAVDSYEKGSASAQSTTSKE-------SKVSNDEE 880
Query: 620 NKNFQSDDEAALPKGQLVQEEEREKGKVGFSVYWKYMTTAYGGVLVPFILLAQIIFQIFQ 679
+ +++ PKGQLVQEEEREKGKVGF+VY KYM AYGG LVP IL+ QI+FQ+
Sbjct: 881 KQ----EEDLPSPKGQLVQEEEREKGKVGFTVYQKYMKLAYGGALVPIILVVQILFQVLN 936
Query: 680 IGSNYWMAWATPVAKDVNPAVGASTLIIVYV------------------GAGYKTATQLF 721
IGSNYWMAW TPV+KDV P V STLI+VYV G+K AT+LF
Sbjct: 937 IGSNYWMAWVTPVSKDVKPLVSGSTLILVYVFLATASSFCILVRAMLSAMTGFKIATELF 996
Query: 722 NKMHVCIFRAPMYFFDSTPSGRILNRVSENVKWADQSAADMDIPYDIGAFAFSMIQLLGI 781
N+MH IFRA M FFD+TP GRILNR S DQSA D+ +P A + + +LGI
Sbjct: 997 NQMHFRIFRASMSFFDATPIGRILNRAS-----TDQSAVDLRLPSQFSNLAIAAVNILGI 1051
Query: 782 IVVMSLVAWQVLIVFVPVIATFIWYQQYYITSTRELSRLIGVCKAPVIQQFSETISGSTT 841
I VM VAWQVLIVF+PVIA WY+QYYI++ REL+RL G+ ++P++Q FSET+SG TT
Sbjct: 1052 IGVMGQVAWQVLIVFIPVIAACTWYRQYYISAARELARLSGISRSPLVQHFSETLSGITT 1111
Query: 842 IRSLDQELRFRDTNMKLIDEYSRPKFHIAGAMEWLRFCIDMLSSITFAFSLAFLISVPNG 901
IRS DQE RFR M+L D YSR +FH AMEWL F +D+LS++ FA SL L+SVP G
Sbjct: 1112 IRSFDQEPRFRTDIMRLNDCYSRLRFHAISAMEWLCFRLDLLSTVAFALSLVILVSVPEG 1171
Query: 902 IIHP-----------------------YKNLERKIISVERILQCACIPSEPALVIEATKP 938
+I+P +LE K+ISVER+LQ IPSEP+LVIE+T+P
Sbjct: 1172 VINPSFAGLAVTYALNLNSLQATLIWTLCDLENKMISVERMLQYIDIPSEPSLVIESTRP 1231
Query: 939 NNSRPSHGEVNIRHLQVRYAPNLPLVLR---------------GRTGSGKSTLIQTLFRI 983
S P GE+ I +LQVRY P+LP+VLR GRTG GKSTLIQTLFRI
Sbjct: 1232 EKSWPCRGEITICNLQVRYGPHLPMVLRGLTCTFRGGLKTGIVGRTGCGKSTLIQTLFRI 1291
Query: 984 VESTAGHILIDGKDISLIGLHDLRTRLSIIPQDPTMFEGTTRSNLDPLEEHADEQIWEAL 1043
VE AG I IDG +I IGLHDLR+RLSIIPQ+PTMFEGT RSNLDPLEE+AD+QIWEAL
Sbjct: 1292 VEPAAGEIRIDGINILTIGLHDLRSRLSIIPQEPTMFEGTVRSNLDPLEEYADDQIWEAL 1351
Query: 1044 DKCQLGDEVRKKKGKLDSQ------------------GRVLLKKSKVLVLDEATASVDTA 1085
DKCQLGDE+RKK+ KLDS GRVLLK+SKVL+LDEATASVDTA
Sbjct: 1352 DKCQLGDEIRKKELKLDSPVSENGQNWSVGQRQLVCLGRVLLKRSKVLILDEATASVDTA 1411
Query: 1086 TDNQIQQTLRQHFSDCTVVTIAHRITSVLDSAMVLLLNHGLIKEYDSPTKLLENKSSSFA 1145
TD IQ+TLRQHFS CTV+TIAHRI+SV+DS MVLLL+ GLI+E+DSP +LLE+KSSSF+
Sbjct: 1412 TDTLIQETLRQHFSGCTVITIAHRISSVIDSDMVLLLDQGLIEEHDSPARLLEDKSSSFS 1471
Query: 1146 QLVAEYTSSS 1155
+LVAEYT+SS
Sbjct: 1472 KLVAEYTASS 1481
|
Pump for glutathione S-conjugates. Arabidopsis thaliana (taxid: 3702) EC: 3 EC: . EC: 6 EC: . EC: 3 EC: . EC: 4 EC: 4 |
| >sp|Q8VZZ4|AB6C_ARATH ABC transporter C family member 6 OS=Arabidopsis thaliana GN=ABCC6 PE=2 SV=3 | Back alignment and function description |
|---|
Score = 1407 bits (3642), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 734/1268 (57%), Positives = 901/1268 (71%), Gaps = 132/1268 (10%)
Query: 4 PYSNAGLFSIRSFSWMGSLIALGNKRTLDLEDVPRLDCSDSIYGVSPVLQNKLEAVVGVA 63
P+S AG+ S SFSWM LI LGN++ +D++DVP+LD SD+ + + ++KLE G
Sbjct: 208 PFSKAGILSRMSFSWMSPLITLGNEKIIDIKDVPQLDRSDTTESLFWIFRSKLEWDDG-E 266
Query: 64 NRLTALRLAKVLFFSAWQEILFIAILALLYTLATYVGPYLIDNFVQYLNGRQAFEYEGYV 123
R+T +L K LF S W++I+ A+LA +YT++ YV PYL+DNFVQYLNG + ++ +GYV
Sbjct: 267 RRITTFKLIKALFLSVWRDIVLSALLAFVYTVSCYVAPYLMDNFVQYLNGNRQYKNQGYV 326
Query: 124 L-----------CLSERHWFFQVQQFGIRFRATLFAMIYNKGLTLSGQAKQGNTSGEIIN 172
L C ++R WFF+ Q+ G+ R+ L +MIY KGLTL +KQG+TSGEIIN
Sbjct: 327 LVTTFFVAKLVECQTQRQWFFRGQKAGLGMRSVLVSMIYEKGLTLPCHSKQGHTSGEIIN 386
Query: 173 LIAVDAER--------------------ALLILYKKLGLASIATLLATAIVMLANFPLGR 212
L+AVDA+R AL ILYK LGL SIA AT +VMLAN+P +
Sbjct: 387 LMAVDADRISAFSWFMHDPWILVLQVSLALWILYKSLGLGSIAAFPATILVMLANYPFAK 446
Query: 213 LREKFQDKFMETKDRRIKATSEILRNMRILKLQGWELK---------KNETAWLKKSVYT 263
L EKFQ M++KD R+K TSE+L NM+ILKLQGWE+K E WLKK VY
Sbjct: 447 LEEKFQSSLMKSKDNRMKKTSEVLLNMKILKLQGWEMKFLSKILELRHIEAGWLKKFVYN 506
Query: 264 EAMISFFCWGAPTFVSVVTFGSCILLGIPLESGMILSALTTFKILQEPIYYLPESISMMI 323
+ I+ W AP+F+S FG+C+LL IPLESG IL+AL TF+ILQ PIY LPE+ISM++
Sbjct: 507 SSAINSVLWAAPSFISATAFGACLLLKIPLESGKILAALATFRILQGPIYKLPETISMIV 566
Query: 324 QAKVPLDRIASFLCLEGLQTDVLEKMPRGNSDTAIEIIDGSFSWDFSSPNPTLRNINLKV 383
Q KV L+RIASFLCL+ LQ DV+ ++P G+S+ A+EI +G+FSWD SSP PTLR++N KV
Sbjct: 567 QTKVSLNRIASFLCLDDLQQDVVGRLPSGSSEMAVEISNGTFSWDDSSPIPTLRDMNFKV 626
Query: 384 FHGMRVAVCGTVGSGKSSCLSCILGGVPKESGIIRLCGTKAYVAQSPWIQSGKIEENILF 443
GM VA+CGTVGSGKSS LS ILG VPK SG +++CG KAY+AQSPWIQSGK+EENILF
Sbjct: 627 SQGMNVAICGTVGSGKSSLLSSILGEVPKISGNLKVCGRKAYIAQSPWIQSGKVEENILF 686
Query: 444 GKEMDRERYERVLEACSLKKDLEVLPFGDQTIIGERGINLSGGQKQRIQIARPLYQDADI 503
GK M+RE Y+RVLEACSL KDLE+LPF DQT+IGERGINLSGGQKQRIQIAR LYQDADI
Sbjct: 687 GKPMEREWYDRVLEACSLNKDLEILPFHDQTVIGERGINLSGGQKQRIQIARALYQDADI 746
Query: 504 FLLDDPFSPVDDHTGAHLFK--FCWVSSSKTVIYATHQVEFLPAADLILVIKDGKITQAG 561
+L DDPFS VD HTG+HLFK + KTVIY THQVEFLP ADLILV+KDGKITQAG
Sbjct: 747 YLFDDPFSAVDAHTGSHLFKEVLLGLLRHKTVIYVTHQVEFLPEADLILVMKDGKITQAG 806
Query: 562 KYSDILNSGTDFMELVGAHKQALSGLDSIDRGPVSERKSINKENDGTSTTNEIVNKEENK 621
KY +IL+SGTDFMELVGAH +AL+ +DS + G SE+ + +KE NE+++ +E +
Sbjct: 807 KYHEILDSGTDFMELVGAHTEALATIDSCETGYASEKSTTDKE-------NEVLHHKEKQ 859
Query: 622 NFQSDDEAALPKGQLVQEEEREKGKVGFSVYWKYMTTAYGGVLVPFILLAQIIFQIFQIG 681
SD++ P GQLVQEEEREKGKVGF+VY KYM AYGG ++P IL+ Q++FQ+ IG
Sbjct: 860 ENGSDNK---PSGQLVQEEEREKGKVGFTVYKKYMALAYGGAVIPLILVVQVLFQLLSIG 916
Query: 682 SNYWMAWATPVAKDVNPAVGASTLIIVYV------------------GAGYKTATQLFNK 723
SNYWM W TPV+KDV P V TLI+VYV G+K AT+LF +
Sbjct: 917 SNYWMTWVTPVSKDVEPPVSGFTLILVYVLLAVASSFCILIRALLVAMTGFKMATELFTQ 976
Query: 724 MHVCIFRAPMYFFDSTPSGRILNRVSENVKWADQSAADMDIPYDIGAFAFSMIQLLGIIV 783
MH+ IFRA M FFD+TP GRILNR S DQS AD+ +P A + I +LGII
Sbjct: 977 MHLRIFRASMSFFDATPMGRILNRAS-----TDQSVADLRLPGQFAYVAIAAINILGIIG 1031
Query: 784 VMSLVAWQVLIVFVPVIATFIWYQQYYITSTRELSRLIGVCKAPVIQQFSETISGSTTIR 843
V+ VAWQVLIVF+PV+A WY+QYYI++ REL+RL G+ ++PV+ FSET+SG TTIR
Sbjct: 1032 VIVQVAWQVLIVFIPVVAACAWYRQYYISAARELARLAGISRSPVVHHFSETLSGITTIR 1091
Query: 844 SLDQELRFRDTNMKLIDEYSRPKFHIAGAMEWLRFCIDMLSSITFAFSLAFLISVPNGII 903
S DQE RFR M+L D YSR KFH GAMEWL F +++LS+ FA SL L+S P G+I
Sbjct: 1092 SFDQEPRFRGDIMRLSDCYSRLKFHSTGAMEWLCFRLELLSTFAFASSLVILVSAPEGVI 1151
Query: 904 HP-----------------------YKNLERKIISVERILQCACIPSEPALVIEATKPNN 940
+P +LE K+ISVER+LQ IPSEP LVIE T+P
Sbjct: 1152 NPSLAGLAITYALNLNTLQATLIWTLCDLENKMISVERMLQYTNIPSEPPLVIETTRPEK 1211
Query: 941 SRPSHGEVNIRHLQVRYAPNLPLVLR---------------GRTGSGKSTLIQTLFRIVE 985
S PS GE+ I +LQVRY P+LP+VL GRTG GKSTLIQTLFRIVE
Sbjct: 1212 SWPSRGEITICNLQVRYGPHLPMVLHGLTCTFPGGLKTGIVGRTGCGKSTLIQTLFRIVE 1271
Query: 986 STAGHILIDGKDISLIGLHDLRTRLSIIPQDPTMFEGTTRSNLDPLEEHADEQIWEALDK 1045
AG I IDG +I IGLHDLR+RLSIIPQDPTMFEGT RSNLDPLEE+ D+QIWEALD
Sbjct: 1272 PAAGEIRIDGINILSIGLHDLRSRLSIIPQDPTMFEGTIRSNLDPLEEYTDDQIWEALDN 1331
Query: 1046 CQLGDEVRKKKGKLDSQ------------------GRVLLKKSKVLVLDEATASVDTATD 1087
CQLGDEVRKK+ KLDS GRVLLK+SK+LVLDEATAS+DTATD
Sbjct: 1332 CQLGDEVRKKELKLDSPVSENGQNWSVGQRQLVCLGRVLLKRSKLLVLDEATASIDTATD 1391
Query: 1088 NQIQQTLRQHFSDCTVVTIAHRITSVLDSAMVLLLNHGLIKEYDSPTKLLENKSSSFAQL 1147
N IQ+TLR HF+DCTV+TIAHRI+SV+DS MVLLL+ GLIKE+DSP +LLE++SS F++L
Sbjct: 1392 NLIQETLRHHFADCTVITIAHRISSVIDSDMVLLLDQGLIKEHDSPARLLEDRSSLFSKL 1451
Query: 1148 VAEYTSSS 1155
VAEYT+SS
Sbjct: 1452 VAEYTTSS 1459
|
Pump for glutathione S-conjugates. Arabidopsis thaliana (taxid: 3702) EC: 3 EC: . EC: 6 EC: . EC: 3 EC: . EC: 4 EC: 4 |
| >sp|Q7GB25|AB5C_ARATH ABC transporter C family member 5 OS=Arabidopsis thaliana GN=ABCC5 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 1165 bits (3013), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 625/1289 (48%), Positives = 808/1289 (62%), Gaps = 140/1289 (10%)
Query: 2 VTPYSNAGLFSIRSFSWMGSLIALGNKRTLDLEDVPRLDCSDSIYGVSPVLQNKLEAVVG 61
VTPYS AGL S+ + SW+ L++ G+KR L+L+D+P L D VL++ +
Sbjct: 227 VTPYSTAGLVSLITLSWLDPLLSAGSKRPLELKDIPLLAPRDRAKSSYKVLKSNWKRCKS 286
Query: 62 VANRLTALRLAKVLFFSAWQEILFIAILALLYTLATYVGPYLIDNFVQYLNGRQAFEYEG 121
N LA+ + S W+E A+ A L TL +YVGPYLI FV YL G++ F +EG
Sbjct: 287 -ENPSKPPSLARAIMKSFWKEAACNAVFAGLNTLVSYVGPYLISYFVDYLGGKEIFPHEG 345
Query: 122 YVLC-----------LSERHWFFQVQQFGIRFRATLFAMIYNKGLTLSGQAKQGNTSGEI 170
YVL ++ R W+ V G+ R+ L AM+Y KGL LS AKQ +TSGEI
Sbjct: 346 YVLAGIFFTSKLIETVTTRQWYMGVDILGMHVRSALTAMVYRKGLKLSSIAKQNHTSGEI 405
Query: 171 INLIAVDAER--------------------ALLILYKKLGLASIATLLATAIVMLANFPL 210
+N +AVD +R AL ILYK +G+A++ATL+AT I +L PL
Sbjct: 406 VNYMAVDVQRIGDYSWYLHDIWMLPMQIVLALAILYKSVGIAAVATLVATIISILVTIPL 465
Query: 211 GRLREKFQDKFMETKDRRIKATSEILRNMRILKLQGWE---------LKKNETAWLKKSV 261
+++E +QDK M KD R++ TSE LRNMR+LKLQ WE +++ E WL+K++
Sbjct: 466 AKVQEDYQDKLMTAKDERMRKTSECLRNMRVLKLQAWEDRYRVRLEEMREEEYGWLRKAL 525
Query: 262 YTEAMISFFCWGAPTFVSVVTFGSCILLGIPLESGMILSALTTFKILQEPIYYLPESISM 321
Y++A ++F W +P FV+ VTF + I LG L +G +LSAL TF+ILQEP+ P+ +SM
Sbjct: 526 YSQAFVTFIFWSSPIFVAAVTFATSIFLGTQLTAGGVLSALATFRILQEPLRNFPDLVSM 585
Query: 322 MIQAKVPLDRIASFLCLEGLQTDVLEKMPRGNSDTAIEIIDGSFSWDFSSPNPTLRNINL 381
M Q KV LDRI+ FL E LQ D +PRG S+ AIEI DG F WD S PTL I +
Sbjct: 586 MAQTKVSLDRISGFLQEEELQEDATVVIPRGLSNIAIEIKDGVFCWDPFSSRPTLSGIQM 645
Query: 382 KVFHGMRVAVCGTVGSGKSSCLSCILGGVPKESGIIRLCGTKAYVAQSPWIQSGKIEENI 441
KV GMRVAVCGTVGSGKSS +SCILG +PK SG +R+CGT YV+QS WIQSG IEENI
Sbjct: 646 KVEKGMRVAVCGTVGSGKSSFISCILGEIPKISGEVRICGTTGYVSQSAWIQSGNIEENI 705
Query: 442 LFGKEMDRERYERVLEACSLKKDLEVLPFGDQTIIGERGINLSGGQKQRIQIARPLYQDA 501
LFG M++ +Y+ V++ACSLKKD+E+ GDQTIIGERGINLSGGQKQR+Q+AR LYQDA
Sbjct: 706 LFGSPMEKTKYKNVIQACSLKKDIELFSHGDQTIIGERGINLSGGQKQRVQLARALYQDA 765
Query: 502 DIFLLDDPFSPVDDHTGAHLFKFCWVS--SSKTVIYATHQVEFLPAADLILVIKDGKITQ 559
DI+LLDDPFS +D HTG+ LF+ +S + KTV++ THQVEFLPAADLILV+K+G+I Q
Sbjct: 766 DIYLLDDPFSALDAHTGSDLFRDYILSALAEKTVVFVTHQVEFLPAADLILVLKEGRIIQ 825
Query: 560 AGKYSDILNSGTDFMELVGAHKQALSGLD-------SIDRGPVSERKSI-NKENDGTSTT 611
+GKY D+L +GTDF LV AH +A+ +D D P+ + + N ++D
Sbjct: 826 SGKYDDLLQAGTDFKALVSAHHEAIEAMDIPSPSSEDSDENPIRDSLVLHNPKSDVFEND 885
Query: 612 NEIVNKEENKNFQSDD----------EAALPKGQLVQEEEREKGKVGFSVYWKYMTTAYG 661
E + KE + + D K QLVQEEER KGKV VY YM AY
Sbjct: 886 IETLAKEVQEGGSASDLKAIKEKKKKAKRSRKKQLVQEEERVKGKVSMKVYLSYMGAAYK 945
Query: 662 GVLVPFILLAQIIFQIFQIGSNYWMAWATPVAKDVNPAVGASTLIIVYVGA--------- 712
G L+P I+LAQ FQ QI SN+WMAWA P + V + L+IVY
Sbjct: 946 GALIPLIILAQAAFQFLQIASNWWMAWANPQTEGDESKVDPTLLLIVYTALAFGSSVFIF 1005
Query: 713 ---------GYKTATQLFNKMHVCIFRAPMYFFDSTPSGRILNRVSENVKWADQSAADMD 763
G A +LF M +FRAPM FFDSTP+GRILNRVS DQS D+D
Sbjct: 1006 VRAALVATFGLAAAQKLFLNMLRSVFRAPMSFFDSTPAGRILNRVS-----IDQSVVDLD 1060
Query: 764 IPYDIGAFAFSMIQLLGIIVVMSLVAWQVLIVFVPVIATFIWYQQYYITSTRELSRLIGV 823
IP+ +G FA + IQL GI+ VM+ V WQV ++ VPV W Q+YY+ S+REL R++ +
Sbjct: 1061 IPFRLGGFASTTIQLCGIVAVMTNVTWQVFLLVVPVAVACFWMQKYYMASSRELVRIVSI 1120
Query: 824 CKAPVIQQFSETISGSTTIRSLDQELRFRDTNMKLIDEYSRPKFHIAGAMEWLRFCIDML 883
K+P+I F E+I+G+ TIR QE RF N+ L+D + RP F A+EWL +++L
Sbjct: 1121 QKSPIIHLFGESIAGAATIRGFGQEKRFIKRNLYLLDCFVRPFFCSIAAIEWLCLRMELL 1180
Query: 884 SSITFAFSLAFLISVPNGIIHP-----------------------YKNLERKIISVERIL 920
S++ FAF + L+S P+G I P + LE KIIS+ERI
Sbjct: 1181 STLVFAFCMVLLVSFPHGTIDPSMAGLAVTYGLNLNGRLSRWILSFCKLENKIISIERIY 1240
Query: 921 QCACIPSEPALVIEATKPNNSRPSHGEVNIRHLQVRYAPNLPLVLR-------------- 966
Q + I E +IE +P +S P+ G + + ++VRYA NLP VL
Sbjct: 1241 QYSQIVGEAPAIIEDFRPPSSWPATGTIELVDVKVRYAENLPTVLHGVSCVFPGGKKIGI 1300
Query: 967 -GRTGSGKSTLIQTLFRIVESTAGHILIDGKDISLIGLHDLRTRLSIIPQDPTMFEGTTR 1025
GRTGSGKSTLIQ LFR++E TAG I ID DIS IGLHDLR+RL IIPQDPT+FEGT R
Sbjct: 1301 VGRTGSGKSTLIQALFRLIEPTAGKITIDNIDISQIGLHDLRSRLGIIPQDPTLFEGTIR 1360
Query: 1026 SNLDPLEEHADEQIWEALDKCQLGDEVRKKKGKLDSQ------------------GRVLL 1067
+NLDPLEEH+D++IWEALDK QLGD VR K KLDS GR LL
Sbjct: 1361 ANLDPLEEHSDDKIWEALDKSQLGDVVRGKDLKLDSPVLENGDNWSVGQRQLVSLGRALL 1420
Query: 1068 KKSKVLVLDEATASVDTATDNQIQQTLRQHFSDCTVVTIAHRITSVLDSAMVLLLNHGLI 1127
K++K+LVLDEATASVDTATDN IQ+ +R F DCTV TIAHRI +V+DS +VL+L+ G +
Sbjct: 1421 KQAKILVLDEATASVDTATDNLIQKIIRTEFEDCTVCTIAHRIPTVIDSDLVLVLSDGRV 1480
Query: 1128 KEYDSPTKLLENKSSSFAQLVAEYTSSSS 1156
E+D+P +LLE+KSS F +LV EY+S S+
Sbjct: 1481 AEFDTPARLLEDKSSMFLKLVTEYSSRST 1509
|
Pump for glutathione S-conjugates. Involved in regulation of K(+) and Na(+) cell content. Mediates resistance to NaCl and Li(+), confers sensitivity to sulfonylurea drugs such as glibenclamide (inducer of stomatal opening), and required for stomatal opening regulation by auxin, abscisic acid (ABA) and external Ca(2+). Transports oestradiol-17-(beta-D-glucuronide) (E(2)17G). Involved in the root auxin content regulation that controls the transition from primary root elongation to lateral root formation. Plays a role in ABA-mediated germination inhibition. Arabidopsis thaliana (taxid: 3702) EC: 3 EC: . EC: 6 EC: . EC: 3 EC: . EC: 4 EC: 4 |
| >sp|Q9M1C7|AB9C_ARATH ABC transporter C family member 9 OS=Arabidopsis thaliana GN=ABCC9 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 1092 bits (2823), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 592/1271 (46%), Positives = 798/1271 (62%), Gaps = 126/1271 (9%)
Query: 3 TPYSNAGLFSIRSFSWMGSLIALGNKRTLDLEDVPRLDCSDSIYGVSPVLQNKLEAVVGV 62
+PY NA LF +FSW+ L +LG KR L+ +DVP +D DS S KL+
Sbjct: 235 SPYGNATLFQRITFSWINPLFSLGYKRPLEKDDVPDIDVKDSARFCSHAFDQKLKTTKEK 294
Query: 63 ANRLTALRLAKVLFFSAWQEILFIAILALLYTLATYVGPYLIDNFVQYLNGRQAFEY-EG 121
A VL + W++ A+ A++ Y+GPYLI++FV++L+ +Q+ G
Sbjct: 295 EGPGNAFFYNSVLRY-VWRKAAINAVFAVVNASTAYIGPYLINDFVEFLSEKQSQSLNHG 353
Query: 122 YVLCL-----------SERHWFFQVQQFGIRFRATLFAMIYNKGLTLSGQAKQGNTSGEI 170
Y+L L ++R W F +Q G+R RA L + IY KGL LS Q++Q +TSGEI
Sbjct: 354 YLLALGFLTAKIVETVTQRQWIFGARQLGLRLRAALISHIYQKGLVLSSQSRQSHTSGEI 413
Query: 171 INLIAVDAER--------------------ALLILYKKLGLASIATLLATAIVMLANFPL 210
IN ++VD +R A+ IL K LGL ++A L+ T +VM N+PL
Sbjct: 414 INYMSVDVQRITDFIWYVNNIWMLPIQIFSAIYILQKHLGLGALAALVTTLMVMACNYPL 473
Query: 211 GRLREKFQDKFMETKDRRIKATSEILRNMRILKLQGWE---------LKKNETAWLKKSV 261
RL+ +Q M KD R+KATSEIL+NM+ILKLQ W+ L+K E L KS+
Sbjct: 474 TRLQRNYQSDIMNAKDDRMKATSEILKNMKILKLQAWDNQFLNKVKTLRKKEYDCLWKSL 533
Query: 262 YTEAMISFFCWGAPTFVSVVTFGSCILLGIPLESGMILSALTTFKILQEPIYYLPESISM 321
+A +F WGAP+ +SVVTF +C+L+G+ L +G +LSAL TF++LQ PI+ LP+ +S
Sbjct: 534 RLQAFTTFILWGAPSLISVVTFVTCMLMGVKLTAGAVLSALATFQMLQSPIFGLPDLLSA 593
Query: 322 MIQAKVPLDRIASFLCLEGLQTDVLEKMPRGNSDTAIEIIDGSFSWDFSSPNPTLRNINL 381
++Q+KV DRIAS+L Q D +E + +++ ++EI +G+FSW+ S PTL +I L
Sbjct: 594 LVQSKVSADRIASYLQQSETQKDAVEYCSKDHTELSVEIENGAFSWEPESSRPTLDDIEL 653
Query: 382 KVFHGMRVAVCGTVGSGKSSCLSCILGGVPKESGIIRLCGTKAYVAQSPWIQSGKIEENI 441
KV GM+VAVCG VGSGKSS LS ILG + K G +R+ G +AYV QSPWI SG I +NI
Sbjct: 654 KVKSGMKVAVCGAVGSGKSSLLSSILGEIQKLKGTVRVSGKQAYVPQSPWILSGTIRDNI 713
Query: 442 LFGKEMDRERYERVLEACSLKKDLEVLPFGDQTIIGERGINLSGGQKQRIQIARPLYQDA 501
LFG + E+YER ++AC+L KD E+ GD T IGERGIN+SGGQKQRIQIAR +YQ+A
Sbjct: 714 LFGSMYESEKYERTVKACALIKDFELFSNGDLTEIGERGINMSGGQKQRIQIARAVYQNA 773
Query: 502 DIFLLDDPFSPVDDHTGAHLFKFCWVS--SSKTVIYATHQVEFLPAADLILVIKDGKITQ 559
DI+LLDDPFS VD HTG LF+ C + KTV+Y THQVEFLPAADLILV+++G++ Q
Sbjct: 774 DIYLLDDPFSAVDAHTGRELFEDCLMGILKDKTVLYVTHQVEFLPAADLILVMQNGRVMQ 833
Query: 560 AGKYSDILNSGTDFMELVGAHKQALSGLDSIDRGPVSERKSINKENDGTSTTNEIVNKEE 619
AGK+ ++L F LVGAH +AL + SI++ S R D T++ E +
Sbjct: 834 AGKFEELLKQNIGFEVLVGAHNEALDSILSIEK---SSRNFKEGSKDDTASIAESLQTHC 890
Query: 620 NKNFQSDDEAALPKGQLVQEEEREKGKVGFSVYWKYMTTAYGGVLVPFILLAQIIFQIFQ 679
+ E + +LVQ+EE EKG +G VY Y+TT GG+LVPFI+LAQ FQ+ Q
Sbjct: 891 DSEHNISTENKKKEAKLVQDEETEKGVIGKEVYLAYLTTVKGGLLVPFIILAQSCFQMLQ 950
Query: 680 IGSNYWMAWATPVAKDVNPAVGASTLIIVYVG------------------AGYKTATQLF 721
I SNYWMAW P + P +G +++VY G TA F
Sbjct: 951 IASNYWMAWTAPPTAESIPKLGMGRILLVYALLAAGSSLCVLARTILVAIGGLSTAETFF 1010
Query: 722 NKMHVCIFRAPMYFFDSTPSGRILNRVSENVKWADQSAADMDIPYDIGAFAFSMIQLLGI 781
++M IFRAPM FFDSTP+GRILNR S DQS D+++ +G AFS+IQ++G
Sbjct: 1011 SRMLCSIFRAPMSFFDSTPTGRILNRAS-----TDQSVLDLEMAVKLGWCAFSIIQIVGT 1065
Query: 782 IVVMSLVAWQVLIVFVPVIATFIWYQQYYITSTRELSRLIGVCKAPVIQQFSETISGSTT 841
I VMS VAWQV ++F+PV ++YQ+YY + RELSR+ GV +AP++ F+E+++G+TT
Sbjct: 1066 IFVMSQVAWQVCVIFIPVAVACVFYQRYYTPTARELSRMSGVERAPILHHFAESLAGATT 1125
Query: 842 IRSLDQELRFRDTNMKLIDEYSRPKFHIAGAMEWLRFCIDMLSSITFAFSLAFLISVPNG 901
IR+ DQ RF +N+ LID +SRP FH+A AMEWL F +++LS FAFSL L+++P G
Sbjct: 1126 IRAFDQRDRFISSNLVLIDSHSRPWFHVASAMEWLSFRLNLLSHFVFAFSLVLLVTLPEG 1185
Query: 902 IIHP-----------------------YKNLERKIISVERILQCACIPSEPALVIEATKP 938
+I+P N E K+ISVERILQ + IPSE LVI+ +P
Sbjct: 1186 VINPSIAGLGVTYGLSLNVLQATVIWNICNAENKMISVERILQYSKIPSEAPLVIDGHRP 1245
Query: 939 NNSRPSHGEVNIRHLQVRYAPNLPLVLR---------------GRTGSGKSTLIQTLFRI 983
++ P+ G + R LQVRYA + P VL+ GRTGSGKSTLIQ LFRI
Sbjct: 1246 LDNWPNVGSIVFRDLQVRYAEHFPAVLKNITCEFPGGKKIGVVGRTGSGKSTLIQALFRI 1305
Query: 984 VESTAGHILIDGKDISLIGLHDLRTRLSIIPQDPTMFEGTTRSNLDPLEEHADEQIWEAL 1043
VE + G I+ID DI+ IGLHDLR+RL IIPQDP +F+GT R NLDPL ++ D +IWEA+
Sbjct: 1306 VEPSQGTIVIDNVDITKIGLHDLRSRLGIIPQDPALFDGTIRLNLDPLAQYTDHEIWEAI 1365
Query: 1044 DKCQLGDEVRKKKGKLDSQ------------------GRVLLKKSKVLVLDEATASVDTA 1085
DKCQLGD +R K +LD+ GRVLLKKS +LVLDEATASVD+A
Sbjct: 1366 DKCQLGDVIRAKDERLDATVVENGENWSVGQRQLVCLGRVLLKKSNILVLDEATASVDSA 1425
Query: 1086 TDNQIQQTLRQHFSDCTVVTIAHRITSVLDSAMVLLLNHGLIKEYDSPTKLLENKSSSFA 1145
TD IQ+ + Q F D TVVTIAHRI +V++S +VL+L+ G I E+DSP KLL+ + S F+
Sbjct: 1426 TDGVIQKIINQEFKDRTVVTIAHRIHTVIESDLVLVLSDGRIAEFDSPAKLLQREDSFFS 1485
Query: 1146 QLVAEYTSSSS 1156
+L+ EY+ S+
Sbjct: 1486 KLIKEYSLRSN 1496
|
Pump for glutathione S-conjugates. Arabidopsis thaliana (taxid: 3702) EC: 3 EC: . EC: 6 EC: . EC: 3 EC: . EC: 4 EC: 4 |
| >sp|Q7FB56|AB15C_ARATH Putative ABC transporter C family member 15 OS=Arabidopsis thaliana GN=ABCC15 PE=5 SV=2 | Back alignment and function description |
|---|
Score = 961 bits (2485), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 511/1061 (48%), Positives = 677/1061 (63%), Gaps = 130/1061 (12%)
Query: 181 ALLILYKKLGLASIATLLATAIVMLANFPLGRLREKFQDKFMETKDRRIKATSEILRNMR 240
A+ IL K LGL ++A L+ T +VM N+PL RL+ +Q M KD R+KATSEIL+NM+
Sbjct: 28 AIYILQKHLGLGALAALVTTLMVMACNYPLTRLQRNYQSDIMNAKDDRMKATSEILKNMK 87
Query: 241 ILKLQGWE---------LKKNETAWLKKSVYTEAMISFFCWGAPTFVSVVTFGSCILLGI 291
ILKLQ W+ L+K E L KS+ + +F WGAP+ +SVVTF +C+L+G+
Sbjct: 88 ILKLQAWDNQFLNKVKTLRKKEYDCLWKSLRLQDFTTFILWGAPSLISVVTFVTCMLMGV 147
Query: 292 PLESGMILSALTTFKILQEPIYYLPESISMMIQAKVPLDRIASFLCLEGLQTDVLEKMPR 351
L +G +LSAL TF++LQ PI+ LP+ +S ++Q+KV DRIAS+L Q D +E
Sbjct: 148 KLTAGAVLSALATFQMLQSPIFGLPDLLSALVQSKVSADRIASYLQQSETQKDAVEYCSN 207
Query: 352 GNSDTAIEIIDGSFSWDFSSPNPTLRNINLKVFHGMRVAVCGTVGSGKSSCLSCILGGVP 411
+++ ++EI +G+FSW+ S PTL +I LKV GM+VA+CG VGSGKSS S ILG +
Sbjct: 208 DHTEFSVEIENGAFSWEPESSRPTLDDIELKVKSGMKVAICGAVGSGKSSLPSSILGEIQ 267
Query: 412 KESGIIRLCGTKAYVAQSPWIQSGKIEENILFGKEMDRERYERVLEACSLKKDLEVLPFG 471
K G +R+ G +AYV QSPWI SG I +NILFG + E+YER ++AC+L KD E+ G
Sbjct: 268 KLKGTVRVSGKQAYVPQSPWILSGTIRDNILFGSIYESEKYERTVKACALIKDFELFSNG 327
Query: 472 DQTIIGERGINLSGGQKQRIQIARPLYQDADIFLLDDPFSPVDDHTGAHLFKFCWVS--S 529
D T IGERGIN+SGGQKQRIQIAR +YQ+ADI+LLDDPFS VD HTG LF+ C +
Sbjct: 328 DLTEIGERGINMSGGQKQRIQIARAVYQNADIYLLDDPFSAVDAHTGRELFEDCLMGILK 387
Query: 530 SKTVIYATHQVEFLPAADLILVIKDGKITQAGKYSDILNSGTDFMELVGAHKQALSGLDS 589
KTV+Y THQVEFLPAADLILV+++G++ QAGK+ ++L F + L+ DS
Sbjct: 388 DKTVLYVTHQVEFLPAADLILVMQNGRVMQAGKFEELLKQNIGF--------EVLTQCDS 439
Query: 590 IDRGPVSERKSINKENDGTSTTNEIVNKEENKNFQSDDEAALPKGQLVQEEEREKGKVGF 649
+I+ EN K+E K LVQ+EE EKG +G
Sbjct: 440 --------EHNISTEN----------KKKEAK--------------LVQDEETEKGVIGK 467
Query: 650 SVYWKYMTTAYGGVLVPFILLAQIIFQIFQIGSNYWMAWATPVAKDVNPAVGASTLIIVY 709
VY Y+TT GG+LVPFI+LAQ FQ+ QI SNYWMAW P + P +G +++VY
Sbjct: 468 EVYLTYLTTVKGGLLVPFIILAQSCFQMLQIASNYWMAWTAPPTAESIPKLGMGRILLVY 527
Query: 710 VG------------------AGYKTATQLFNKMHVCIFRAPMYFFDSTPSGRILNRVSEN 751
G TA F++M IFRAPM +FDSTP+GRILNR S
Sbjct: 528 ALLAAGSSLCVLARTILVAIGGLSTAETFFSRMLCSIFRAPMSYFDSTPTGRILNRAS-- 585
Query: 752 VKWADQSAADMDIPYDIGAFAFSMIQLLGIIVVMSLVAWQVLIVFVPVIATFIWYQQYYI 811
DQS D+++ +G AFS+IQ++G I VMS VAWQV ++F+PV ++YQ+YY
Sbjct: 586 ---TDQSVLDLEMAVKLGWCAFSIIQIVGTIFVMSQVAWQVCVIFIPVAVACVFYQRYYT 642
Query: 812 TSTRELSRLIGVCKAPVIQQFSETISGSTTIRSLDQELRFRDTNMKLIDEYSRPKFHIAG 871
+ RELSR+ GV +AP++ F+E+++G+TTIR+ DQ RF +N+ LID +SRP FH+A
Sbjct: 643 PTERELSRMSGVERAPILHHFAESLAGATTIRAFDQRDRFISSNLVLIDSHSRPWFHVAS 702
Query: 872 AMEWLRFCIDMLSSITFAFSLAFLISVPNGIIHP-----------------------YKN 908
AMEWL F +++LS FAFSL L+++P G+I+P N
Sbjct: 703 AMEWLSFRLNLLSHFVFAFSLVLLVTLPEGVINPSIAGLGVTYGLSLNVLQATVIWNICN 762
Query: 909 LERKIISVERILQCACIPSEPALVIEATKPNNSRPSHGEVNIRHLQVRYAPNLPLVLR-- 966
E K+ISVERILQ + IPSE LVI+ +P ++ P+ G + R LQVRYA + P VL+
Sbjct: 763 AENKMISVERILQHSKIPSEAPLVIDDQRPLDNWPNVGSIVFRDLQVRYAEHFPAVLKNI 822
Query: 967 -------------GRTGSGKSTLIQTLFRIVESTAGHILIDGKDISLIGLHDLRTRLSII 1013
GRTGSGKSTLIQ LFRIVE + G I+ID DI+ IGLHDLR+RL II
Sbjct: 823 TCAFPGGKKIGVVGRTGSGKSTLIQALFRIVEPSHGTIVIDNVDITKIGLHDLRSRLGII 882
Query: 1014 PQDPTMFEGTTRSNLDPLEEHADEQIWEALDKCQLGDEVRKKKGKLDSQ----------- 1062
PQD +F+GT R NLDPL ++ D +IWEALDKCQLGD +R K KLD+
Sbjct: 883 PQDNALFDGTIRLNLDPLAQYTDREIWEALDKCQLGDVIRAKDEKLDATVVENGENWSVG 942
Query: 1063 -------GRVLLKKSKVLVLDEATASVDTATDNQIQQTLRQHFSDCTVVTIAHRITSVLD 1115
GRVLLKKS +LVLDEATASVD+ATD IQ+ + Q F D TVVTIAHRI +V++
Sbjct: 943 QRQLVCLGRVLLKKSNILVLDEATASVDSATDGVIQKIINQEFKDRTVVTIAHRIHTVIE 1002
Query: 1116 SAMVLLLNHGLIKEYDSPTKLLENKSSSFAQLVAEYTSSSS 1156
S +VL+L+ G I E+DSP KLL+ + S F++L+ EY+ S+
Sbjct: 1003 SDLVLVLSDGRIAEFDSPAKLLQREDSFFSKLIKEYSLRSN 1043
|
Pump for glutathione S-conjugates. Arabidopsis thaliana (taxid: 3702) EC: 3 EC: . EC: 6 EC: . EC: 3 EC: . EC: 4 EC: 4 |
| >sp|Q7DM58|AB4C_ARATH ABC transporter C family member 4 OS=Arabidopsis thaliana GN=ABCC4 PE=1 SV=2 | Back alignment and function description |
|---|
Score = 855 bits (2210), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 503/1281 (39%), Positives = 733/1281 (57%), Gaps = 141/1281 (11%)
Query: 2 VTPYSNAGLFSIRSFSWMGSLIALGNKRTLDLEDVPRLDCSDSIYGVSPVLQNKLEAVVG 61
V+ Y++A +FS + WM L++ G K L LE VP L ++ + ++
Sbjct: 249 VSLYASASVFSKTFWLWMNPLLSKGYKSPLTLEQVPTLSPEHKAERLALLFESSWPK--- 305
Query: 62 VANRLTALRLAKVLFFSAWQEILFIAILALLYTLATYVGPYLIDNFVQYLNGRQAFEYEG 121
+ ++ + L W+EILF AILA++ YVGP LI +FV + +G+++ ++G
Sbjct: 306 -PSENSSHPIRTTLLRCFWKEILFTAILAIVRLGVMYVGPVLIQSFVDFTSGKRSSPWQG 364
Query: 122 YVLCL-----------SERHWFFQVQQFGIRFRATLFAMIYNKGLTLSGQAKQGNTSGEI 170
Y L L + + F Q+ G+ R+TL +Y KGL L+G A+Q + G+I
Sbjct: 365 YYLVLILLVAKFVEVLTTHQFNFDSQKLGMLIRSTLITALYKKGLKLTGSARQNHGVGQI 424
Query: 171 INLIAVDAER--------------------ALLILYKKLGLASIATLLATAIVMLANFPL 210
+N +AVDA++ AL++LY LG AS+ T + + L
Sbjct: 425 VNYMAVDAQQLSDMMLQLHAIWLMPLQVTVALVLLYGSLG-ASVITAVIGLTGVFVFILL 483
Query: 211 GRLREK-FQDKFMETKDRRIKATSEILRNMRILKLQGWE---------LKKNETAWLKKS 260
G R +Q M +D R+KAT+E+L MR++K Q WE + E WL K
Sbjct: 484 GTQRNNGYQFSLMGNRDSRMKATNEMLNYMRVIKFQAWENHFNKRILKFRDMEFGWLSKF 543
Query: 261 VYTEAMISFFCWGAPTFVSVVTFGSCILLGIPLESGMILSALTTFKILQEPIYYLPESIS 320
+Y+ A W P +S +TF + + LG+ L++G + + T FKILQEPI P+S+
Sbjct: 544 LYSIAGNIIVLWSTPVLISALTFATALALGVKLDAGTVFTTTTIFKILQEPIRTFPQSMI 603
Query: 321 MMIQAKVPLDRIASFLCLEGLQTDVLEKMPRGNSDTAIEIIDGSFSWDFSSPNPTLRNIN 380
+ QA + L R+ S++ + L D +E+ + +TA+E+ DGSFSWD P L +IN
Sbjct: 604 SLSQAMISLGRLDSYMMSKELSEDAVERALGCDGNTAVEVRDGSFSWDDEDNEPALSDIN 663
Query: 381 LKVFHGMRVAVCGTVGSGKSSCLSCILGGVPKESGIIRLCGTKAYVAQSPWIQSGKIEEN 440
KV G A+ GTVGSGKSS L+ +LG + + SG +R+CG+ YVAQ+ WI++G +++N
Sbjct: 664 FKVKKGELTAIVGTVGSGKSSLLASVLGEMHRISGQVRVCGSTGYVAQTSWIENGTVQDN 723
Query: 441 ILFGKEMDRERYERVLEACSLKKDLEVLPFGDQTIIGERGINLSGGQKQRIQIARPLYQD 500
ILFG M RE+Y +VL CSL+KDL+++ FGD+T IGERGINLSGGQKQRIQ+AR +YQ+
Sbjct: 724 ILFGLPMVREKYNKVLNVCSLEKDLQMMEFGDKTEIGERGINLSGGQKQRIQLARAVYQE 783
Query: 501 ADIFLLDDPFSPVDDHTGAHLFKFCWVSS--SKTVIYATHQVEFLPAADLILVIKDGKIT 558
D++LLDD FS VD HTG+ +FK C + KTV+ THQV+FL D ILV++DGKI
Sbjct: 784 CDVYLLDDVFSAVDAHTGSDIFKKCVRGALKGKTVLLVTHQVDFLHNVDCILVMRDGKIV 843
Query: 559 QAGKYSDILNSGTDFMELVGAHKQAL----SGLDSI-----DRGPVSERKSINKENDGTS 609
++GKY ++++SG DF ELV AH+ ++ +G DS R P S S + + +
Sbjct: 844 ESGKYDELVSSGLDFGELVAAHETSMELVEAGADSAAVATSPRTPTSPHASSPRTSMESP 903
Query: 610 TTNEIVNKEENKNFQSDDEAALPKGQLVQEEEREKGKVGFSVYWKYMTTAYGGVLVPFIL 669
+++ N E K+F +L++EEERE G+V VY +Y T AYG + +L
Sbjct: 904 HLSDL-NDEHIKSFLG-SHIVEDGSKLIKEEERETGQVSLGVYKQYCTEAYGWWGIVLVL 961
Query: 670 LAQIIFQIFQIGSNYWMAWATPVAKDVNPAVGASTLIIVYV------------------G 711
+ +Q + S+YW+A+ T + + AS I+ YV
Sbjct: 962 FFSLTWQGSLMASDYWLAYETSAKNAI--SFDASVFILGYVIIALVSIVLVSIRSYYVTH 1019
Query: 712 AGYKTATQLFNKMHVCIFRAPMYFFDSTPSGRILNRVSENVKWADQSAADMDIPYDIGAF 771
G KTA F ++ I APM FFD+TPSGRIL+R S DQ+ D+ IP+ +G
Sbjct: 1020 LGLKTAQIFFRQILNSILHAPMSFFDTTPSGRILSRAS-----TDQTNVDILIPFMLGLV 1074
Query: 772 AFSMIQLLGIIVVMSLVAWQVLIVFVPVIATFIWYQQYYITSTRELSRLIGVCKAPVIQQ 831
LL I +V AW +P+ IWY+ YY+ S+REL+R+ + KAP+I
Sbjct: 1075 VSMYTTLLSIFIVTCQYAWPTAFFVIPLGWLNIWYRNYYLASSRELTRMDSITKAPIIHH 1134
Query: 832 FSETISGSTTIRSLDQELRFRDTNMKLIDEYSRPKFHIAGAMEWLRFCIDMLSSITFAFS 891
FSE+I+G TIRS ++ FR N+K +++ R FH G+ EWL F ++++ S S
Sbjct: 1135 FSESIAGVMTIRSFRKQELFRQENVKRVNDNLRMDFHNNGSNEWLGFRLELVGSWVLCIS 1194
Query: 892 LAFLISVPNGIIHP---------------------YKN--LERKIISVERILQCACIPSE 928
F++ +P+ +I P Y + +E K++SVERI Q IPSE
Sbjct: 1195 ALFMVLLPSNVIRPENVGLSLSYGLSLNSVLFFAIYMSCFVENKMVSVERIKQFTDIPSE 1254
Query: 929 PALVIEATKPNNSRPSHGEVNIRHLQVRYAPNLPLVLR---------------GRTGSGK 973
+ T P ++ P HG V++ L+VRY PN PLVL+ GRTGSGK
Sbjct: 1255 SEWERKETLPPSNWPFHGNVHLEDLKVRYRPNTPLVLKGITLDIKGGEKVGVVGRTGSGK 1314
Query: 974 STLIQTLFRIVESTAGHILIDGKDISLIGLHDLRTRLSIIPQDPTMFEGTTRSNLDPLEE 1033
STLIQ LFR+VE + G I+IDG DIS +GLHDLR+R IIPQ+P +FEGT RSN+DP E+
Sbjct: 1315 STLIQVLFRLVEPSGGKIIIDGIDISTLGLHDLRSRFGIIPQEPVLFEGTVRSNIDPTEQ 1374
Query: 1034 HADEQIWEALDKCQLGDEVRKKKGKLDS------------------QGRVLLKKSKVLVL 1075
++DE+IW++L++CQL D V K KLDS GRV+LK+S++L L
Sbjct: 1375 YSDEEIWKSLERCQLKDVVATKPEKLDSLVVDNGENWSVGQRQLLCLGRVMLKRSRLLFL 1434
Query: 1076 DEATASVDTATDNQIQQTLRQHFSDCTVVTIAHRITSVLDSAMVLLLNHGLIKEYDSPTK 1135
DEATASVD+ TD IQ+ +R+ F+ CT+++IAHRI +V+D VL+++ G KE+DSP +
Sbjct: 1435 DEATASVDSQTDAVIQKIIREDFASCTIISIAHRIPTVMDGDRVLVIDAGKAKEFDSPAR 1494
Query: 1136 LLENKSSSFAQLVAEYTSSSS 1156
LLE + S FA LV EY S+
Sbjct: 1495 LLE-RPSLFAALVQEYALRSA 1514
|
Involved in the regulation of stomatal aperture. May function as a high-capacity pump for folates. Arabidopsis thaliana (taxid: 3702) EC: 3 EC: . EC: 6 EC: . EC: 3 EC: . EC: 4 EC: 4 |
| >sp|Q9LZJ5|AB14C_ARATH ABC transporter C family member 14 OS=Arabidopsis thaliana GN=ABCC14 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 848 bits (2192), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 495/1307 (37%), Positives = 735/1307 (56%), Gaps = 168/1307 (12%)
Query: 2 VTPYSNAGLFSIRSFSWMGSLIALGNKRTLDLEDVPRLDCSDSIYGVSPVLQNKLEAVVG 61
V+ Y++A S + WM L+ G K L+L+ VP L ++ + ++K
Sbjct: 247 VSLYASASFISKTFWLWMNPLLRKGYKSPLNLDQVPTLSPEHRAEKLATLFESKWPK--P 304
Query: 62 VANRLTALRLAKVLFFSAWQEILFIAILALLYTLATYVGPYLIDNFVQYLNGRQAFEYEG 121
N +R + F W+EI F A+LA++ YVGP LI +FV + +G+++ +G
Sbjct: 305 QENSRNPVRTTLIRCF--WKEIAFTAVLAIIRLSVIYVGPVLIQSFVDFTSGKRSSPSQG 362
Query: 122 YVLCL-----------SERHWFFQVQQFGIRFRATLFAMIYNKGLTLSGQAKQGNTSGEI 170
Y L L S + F Q+ G+ R+TL +Y KGL L+G A+Q + G+I
Sbjct: 363 YYLVLILLIAKFVEVLSTHQFNFNSQKLGMLIRSTLITALYKKGLKLTGSARQNHGVGQI 422
Query: 171 INLIAVDAER--------------------ALLILYKKLGLASIATLLATAIVMLANFPL 210
+N +AVDA++ A+++LY LG + + T++ + +
Sbjct: 423 VNYMAVDAQQLSDMMLQLHAIWLMPLQVAAAIVLLYNTLGPSVVTTVIGLTGIFVFILLG 482
Query: 211 GRLREKFQDKFMETKDRRIKATSEILRNMRILKLQGWE---------LKKNETAWLKKSV 261
+ ++Q M +D R+KAT+E+L MR++K Q WE ++ E WL K +
Sbjct: 483 TKRNNRYQFSLMMNRDSRMKATNEMLNYMRVIKFQAWEDHFNERILKFREMEFGWLSKFL 542
Query: 262 YTEAMISFFCWGAPTFVSVVTFGSCILLGIPLESGMILSALTTFKILQEPIYYLPESISM 321
Y+ A W P +S +TF + + LG+ L++G + + T FKILQEPI P+S+
Sbjct: 543 YSIAGNIIVLWSTPVLISALTFTTAVFLGVKLDAGTVFTTTTIFKILQEPIRTFPQSMIS 602
Query: 322 MIQAKVPLDRIASFLCLEGLQTDVLEKMPRGNSDTAIEIIDGSFSWDFSSPNPTLRNINL 381
+ QA + L R+ +++ L + +E+ + + A+EI DGSFSWD P + NIN
Sbjct: 603 LSQAMISLGRLDAYMMSRELSEETVERSQGCDGNVAVEIKDGSFSWDDEDDEPAIENINF 662
Query: 382 KVFHGMRVAVCGTVGSGKSSCLSCILGGVPKESGIIRLCGTKAYVAQSPWIQSGKIEENI 441
+V G A+ GTVGSGKSS L+ +LG + K SG +R+CGT AYVAQ+ WIQ+G +++NI
Sbjct: 663 EVKKGELAAIVGTVGSGKSSLLASVLGEMHKLSGKVRVCGTTAYVAQTSWIQNGTVQDNI 722
Query: 442 LFGKEMDRERYERVLEACSLKKDLEVLPFGDQTIIGERGINLSGGQKQRIQIARPLYQDA 501
LFG M+R +Y VL+ C L+KD++++ FGDQT IGERGINLSGGQKQRIQ+AR +YQ++
Sbjct: 723 LFGLPMNRSKYNEVLKVCCLEKDMQIMEFGDQTEIGERGINLSGGQKQRIQLARAVYQES 782
Query: 502 DIFLLDDPFSPVDDHTGAHLFKFCWVSS--SKTVIYATHQVEFLPAADLILVIKDGKITQ 559
D++LLDD FS VD HTG+ +FK C + KT++ THQV+FL D ILV++DG I Q
Sbjct: 783 DVYLLDDVFSAVDAHTGSDIFKKCVRGALKGKTILLVTHQVDFLHNVDRILVMRDGMIVQ 842
Query: 560 AGKYSDILNSGTDFMELVGAHKQALSGLDSIDRG----------PVSERKSINKENDGTS 609
+GKY ++++SG DF ELV AH+ ++ +++ P+++R SI+ E+
Sbjct: 843 SGKYDELVSSGLDFGELVAAHETSMELVEAGSASATAANVPMASPITQR-SISIESPRQP 901
Query: 610 TTNEI------------------------VNKEENKNFQSDDEAALPK--GQLVQEEERE 643
+ ++ +N E K+F + +P+ +L++EEERE
Sbjct: 902 KSPKVHRTTSMESPRVLRTTSMESPRLSELNDESIKSFLGSN---IPEDGSRLIKEEERE 958
Query: 644 KGKVGFSVYWKYMTTAYGGVLVPFILLAQIIFQIFQIGSNYWMAWATPVAKDVNPAVGAS 703
G+V F VY Y T AYG + ++ + +Q + S+YW+A+ T +V + A+
Sbjct: 959 VGQVSFQVYKLYSTEAYGWWGMILVVFFSVAWQASLMASDYWLAYETSAKNEV--SFDAT 1016
Query: 704 TLIIVYV------------------GAGYKTATQLFNKMHVCIFRAPMYFFDSTPSGRIL 745
I VYV G KTA F ++ + APM FFD+TPSGRIL
Sbjct: 1017 VFIRVYVIIAAVSIVLVCLRAFYVTHLGLKTAQIFFKQILNSLVHAPMSFFDTTPSGRIL 1076
Query: 746 NRVSENVKWADQSAADMDIPYDIGAFAFSMIQLLGIIVVMSLVAWQVLIVFVPVIATFIW 805
+R S DQ+ D+ IP+ IG A LL I +V AW + +P+ IW
Sbjct: 1077 SRAS-----TDQTNVDIFIPFMIGLVATMYTTLLSIFIVTCQYAWPTVFFIIPLGWLNIW 1131
Query: 806 YQQYYITSTRELSRLIGVCKAPVIQQFSETISGSTTIRSLDQELRFRDTNMKLIDEYSRP 865
Y+ YY+ S+REL+RL + KAPVI FSE+I+G TIR+ ++ FR N+K ++ R
Sbjct: 1132 YRGYYLASSRELTRLDSITKAPVIHHFSESIAGVMTIRAFKKQPMFRQENVKRVNANLRM 1191
Query: 866 KFHIAGAMEWLRFCIDMLSSITFAFSLAFLISVPNGIIHPYKN----------------- 908
FH G+ EWL F ++++ S S F++ +P+ II P
Sbjct: 1192 DFHNNGSNEWLGFRLELIGSWVLCISALFMVMLPSNIIKPENVGLSLSYGLSLNGVLFWA 1251
Query: 909 ------LERKIISVERILQCACIPSEPALVIEATKPNNSRPSHGEVNIRHLQVRYAPNLP 962
+E K++SVERI Q IP+E I+ ++P + P G + + ++VRY PN P
Sbjct: 1252 IYLSCFIENKMVSVERIKQFTDIPAEAKWEIKESRPPPNWPYKGNIRLEDVKVRYRPNTP 1311
Query: 963 LVLRG---------------RTGSGKSTLIQTLFRIVESTAGHILIDGKDISLIGLHDLR 1007
LVL+G RTGSGKSTLIQ LFR+VE + G I+IDG DI +GLHDLR
Sbjct: 1312 LVLKGLTIDIKGGEKIGVVGRTGSGKSTLIQVLFRLVEPSGGKIIIDGIDICTLGLHDLR 1371
Query: 1008 TRLSIIPQDPTMFEGTTRSNLDPLEEHADEQIWEALDKCQLGDEVRKKKGKLDS------ 1061
+R IIPQ+P +FEGT RSN+DP E+++DE+IW++L++CQL D V K KLDS
Sbjct: 1372 SRFGIIPQEPVLFEGTVRSNIDPTEKYSDEEIWKSLERCQLKDVVASKPEKLDSLVADNG 1431
Query: 1062 ------------QGRVLLKKSKVLVLDEATASVDTATDNQIQQTLRQHFSDCTVVTIAHR 1109
GRV+LK+S++L LDEATASVD+ TD IQ+ +R+ FSDCT+++IAHR
Sbjct: 1432 ENWSVGQRQLLCLGRVMLKRSRILFLDEATASVDSQTDAMIQKIIREDFSDCTIISIAHR 1491
Query: 1110 ITSVLDSAMVLLLNHGLIKEYDSPTKLLENKSSSFAQLVAEYTSSSS 1156
I +V+D VL+++ G KEYDSP +LLE + S FA LV EY S+
Sbjct: 1492 IPTVMDCDRVLVIDAGKAKEYDSPVRLLE-RQSLFAALVQEYALRSA 1537
|
Pump for glutathione S-conjugates. Arabidopsis thaliana (taxid: 3702) EC: 3 EC: . EC: 6 EC: . EC: 3 EC: . EC: 4 EC: 4 |
| >sp|Q9LYS2|AB10C_ARATH ABC transporter C family member 10 OS=Arabidopsis thaliana GN=ABCC10 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 842 bits (2174), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 502/1273 (39%), Positives = 710/1273 (55%), Gaps = 152/1273 (11%)
Query: 2 VTPYSNAGLFSIRSFSWMGSLIALGNKRTLDLEDVPRLDCSDSIYGVSPVLQNKLEAVVG 61
V+ ++ AGLFS SF W+ SLI GN + L+ ED+P L + + + E ++
Sbjct: 204 VSQFAKAGLFSTLSFWWLNSLIKRGNVKDLEEEDIPELRKEERAETCYSLFE---ENLIE 260
Query: 62 VANRLTAL---RLAKVLFFSAWQEILFIAILALLYTLATYVGPYLIDNFVQYLNGRQAFE 118
RL + + KV W+E+L A + +A GP L++ F+ G +F
Sbjct: 261 QKRRLGSSCQPSILKVTVLCVWRELLTSGFFAFMKIVAVSAGPLLLNAFILVAEGNASFR 320
Query: 119 YEGYVLC-----------LSERHWFFQVQQFGIRFRATLFAMIYNKGLTLSGQAKQGNTS 167
YEG VL LS+R W+F+ + G+R R+ L A I K L L+ ++ ++
Sbjct: 321 YEGLVLAVLLFFSKMIESLSQRQWYFRCRIVGLRVRSLLTAAINKKQLRLNNSSRLIHSG 380
Query: 168 GEIINLIAVDAER--------------------ALLILYKKLGLASIATLLATAIVMLAN 207
EI+N VDA R AL IL+ +G+A+ + L + +L N
Sbjct: 381 SEIMNYATVDAYRIGEFPYWFHQLWTTSFQLLIALGILFHSVGVATFSALAVIILTVLCN 440
Query: 208 FPLGRLREKFQDKFMETKDRRIKATSEILRNMRILKLQGWE---------LKKNETAWLK 258
P+ +L+ KFQ + M ++D R+KA +E L NM++LKL WE L+ E LK
Sbjct: 441 APIAKLQNKFQSELMTSQDERLKACNESLVNMKVLKLYAWESHFKKVIEKLRNIELKSLK 500
Query: 259 KSVYTEAMISFFCWGAPTFVSVVTFGSCILLGIPLESGMILSALTTFKILQEPIYYLPES 318
+A + W +P FVS TF +C L IPL + + + + T +++Q+P+ +P+
Sbjct: 501 AVQMRKAYNAVLFWSSPVFVSAATFATCYFLDIPLRASNVFTFVATLRLVQDPVRMIPDV 560
Query: 319 ISMMIQAKVPLDRIASFLCLEGLQTDVLEKMPRGNSD-TAIEIIDGSFSWD-FSSPNPTL 376
I + IQAKV RIA+FL LQ + R + AI I SFSW+ S P L
Sbjct: 561 IGVTIQAKVAFSRIATFLEAPELQGGERRRKQRSEGNQNAIIIKSASFSWEEKGSTKPNL 620
Query: 377 RNINLKVFHGMRVAVCGTVGSGKSSCLSCILGGVPKESGIIRLCGTKAYVAQSPWIQSGK 436
RN++L+V G +VAVCG VGSGKS+ L+ ILG P SG I GT AYV+Q+ WIQ+G
Sbjct: 621 RNVSLEVKFGEKVAVCGEVGSGKSTLLAAILGETPCVSGTIDFYGTIAYVSQTAWIQTGT 680
Query: 437 IEENILFGKEMDRERYERVLEACSLKKDLEVLPFGDQTIIGERGINLSGGQKQRIQIARP 496
I +NILFG MD RY ++ SL KDLE+LP GDQT IGERG+NLSGGQKQRIQ+AR
Sbjct: 681 IRDNILFGGVMDEHRYRETIQKSSLDKDLELLPDGDQTEIGERGVNLSGGQKQRIQLARA 740
Query: 497 LYQDADIFLLDDPFSPVDDHTGAHLFKFCWVS--SSKTVIYATHQVEFLPAADLILVIKD 554
LYQDADI+LLDDPFS VD HT + LF+ + + K V+ THQV+FLPA D +L++ D
Sbjct: 741 LYQDADIYLLDDPFSAVDAHTASSLFQEYVMDALAGKAVLLVTHQVDFLPAFDSVLLMSD 800
Query: 555 GKITQAGKYSDILNSGTDFMELVGAHKQALSGLDSIDRGPVSERKSINKENDGTSTTNEI 614
G+IT+A Y ++L DF +LV AH++ SER + EN
Sbjct: 801 GEITEADTYQELLARSRDFQDLVNAHRETAG----------SER-VVAVENPTKPV---- 845
Query: 615 VNKEENKNFQSDDEAALPKGQLVQEEEREKGKVGFSVYWKYMTTAYGGVLVPFILLAQII 674
KE N+ S + P +L+++EEREKG G Y +YM G + LAQ+
Sbjct: 846 --KEINRVISSQSKVLKP-SRLIKQEEREKGDTGLRPYIQYMNQNKGYIFFFIASLAQVT 902
Query: 675 FQIFQIGSNYWMAWATPVAKDVNPAVGASTLIIVYVGAG------------------YKT 716
F + QI N WMA A NP V LI+VY+ G K+
Sbjct: 903 FAVGQILQNSWMA-----ANVDNPQVSTLKLILVYLLIGLCSVLCLMVRSVCVVIMCMKS 957
Query: 717 ATQLFNKMHVCIFRAPMYFFDSTPSGRILNRVSENVKWADQSAADMDIPYDIGAFAFSMI 776
+ LF+++ +FRAPM F+DSTP GRIL+RVS +D S D+D+P+ + S +
Sbjct: 958 SASLFSQLLNSLFRAPMSFYDSTPLGRILSRVS-----SDLSIVDLDVPFGLIFVVASSV 1012
Query: 777 QLLGIIVVMSLVAWQVLIVFVPVIATFIWYQQYYITSTRELSRLIGVCKAPVIQQFSETI 836
+ V+++V WQVL V VP++ Q+YY + +EL R+ G ++ V +E++
Sbjct: 1013 NTGCSLGVLAIVTWQVLFVSVPMVYLAFRLQKYYFQTAKELMRINGTTRSYVANHLAESV 1072
Query: 837 SGSTTIRSLDQELRFRDTNMKLIDEYSRPKFHIAGAMEWL---------------RFCID 881
+G+ TIR+ D+E RF ++ LID + P FH A EWL FC+
Sbjct: 1073 AGAITIRAFDEEERFFKKSLTLIDTNASPFFHSFAANEWLIQRLETVSAIVLASTAFCMI 1132
Query: 882 MLSSITFA-----FSLAFLISVPNGIIHPYKN---LERKIISVERILQCACIPSEPALVI 933
+L + TF+ +L++ +S+ G+++ +N L IISVER+ Q + E VI
Sbjct: 1133 LLPTGTFSSGFIGMALSYGLSLNMGLVYSVQNQCYLANWIISVERLNQYTHLTPEAPEVI 1192
Query: 934 EATKPNNSRPSHGEVNIRHLQVRYAPNLPLVLR---------------GRTGSGKSTLIQ 978
E T+P + P G V I LQ+RY PLVL+ GRTGSGK+TLI
Sbjct: 1193 EETRPPVNWPVTGRVEISDLQIRYRRESPLVLKGISCTFEGGHKIGIVGRTGSGKTTLIS 1252
Query: 979 TLFRIVESTAGHILIDGKDISLIGLHDLRTRLSIIPQDPTMFEGTTRSNLDPLEEHADEQ 1038
LFR+VE G I++DG DIS IG+HDLR+R IIPQDPT+F GT R NLDPL +H+D +
Sbjct: 1253 ALFRLVEPVGGKIVVDGVDISKIGVHDLRSRFGIIPQDPTLFNGTVRFNLDPLCQHSDAE 1312
Query: 1039 IWEALDKCQLGDEVRKKKGKLDS------------------QGRVLLKKSKVLVLDEATA 1080
IWE L KCQL + V++K+ LDS GR +L++S+VLVLDEATA
Sbjct: 1313 IWEVLGKCQLKEVVQEKENGLDSLVVEDGSNWSMGQRQLFCLGRAVLRRSRVLVLDEATA 1372
Query: 1081 SVDTATDNQIQQTLRQHFSDCTVVTIAHRITSVLDSAMVLLLNHGLIKEYDSPTKLLENK 1140
S+D ATD +Q+T+R+ F+DCTV+T+AHRI +V+D MVL ++ G I EYD P KL++++
Sbjct: 1373 SIDNATDLILQKTIRREFADCTVITVAHRIPTVMDCTMVLSISDGRIVEYDEPMKLMKDE 1432
Query: 1141 SSSFAQLVAEYTS 1153
+S F +LV EY S
Sbjct: 1433 NSLFGKLVKEYWS 1445
|
Pump for glutathione S-conjugates. Arabidopsis thaliana (taxid: 3702) EC: 3 EC: . EC: 6 EC: . EC: 3 EC: . EC: 4 EC: 4 |
| >sp|Q8LGU1|AB8C_ARATH ABC transporter C family member 8 OS=Arabidopsis thaliana GN=ABCC8 PE=2 SV=3 | Back alignment and function description |
|---|
Score = 838 bits (2166), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 503/1271 (39%), Positives = 715/1271 (56%), Gaps = 143/1271 (11%)
Query: 6 SNAGLFSIRSFSWMGSLIALGNKRTLDLEDVPRLDCSDSIYGVSPVLQNKLEAVVG---- 61
+ AG FSI SFSWM L++LG K+ L ED+P + D + ++G
Sbjct: 204 ATAGFFSILSFSWMNPLLSLGFKKPLSPEDIPSVVPEDEAQLAYKKFSQAWDTLLGDESS 263
Query: 62 VANRLTALRLAKVLFFSAWQEILFIAILALLYTLATYVGPYLIDNFVQYLNGRQAFEYEG 121
R R ++F +E +FIA+ A L T A P ++ FV Y N G
Sbjct: 264 TKERNLVFRAVVKVYF---KENIFIAVFAFLRTFAVVSLPLMLYVFVDYANSDHRDLRNG 320
Query: 122 Y-----------VLCLSERHWFFQVQQFGIRFRATLFAMIYNKGLTLSGQAKQGNTSGEI 170
+ V L+ RHW+F ++ G+R R+ L Y K L LS ++ ++SGEI
Sbjct: 321 FFNLACLVMLKLVESLTMRHWYFASRRSGMRIRSALMVAAYKKQLKLSSLGRKRHSSGEI 380
Query: 171 INLIAVDAER--------------------ALLILYKKLGLASIATLLATAIVMLANFPL 210
+N IAVDA R + +L+ +G + L+ + L N P
Sbjct: 381 VNYIAVDAYRMGEFLWWFHSGWSLSLQLLLSTAVLFGVVGAGAFPGLILLLLCGLLNLPF 440
Query: 211 GRLREKFQDKFMETKDRRIKATSEILRNMRILKLQGWE---------LKKNETAWLKKSV 261
++ + Q +FM +D+R+++TSEIL +M+++KLQ WE + +E WL K+
Sbjct: 441 AKMLQNCQTQFMIAQDKRLRSTSEILNSMKVIKLQSWEDEFKKKIESCRDDEFTWLAKAQ 500
Query: 262 YTEAMISFFCWGAPTFVSVVTFGSCILL-GIPLESGMILSALTTFKILQEPIYYLPESIS 320
T+A SF W +PT VS V F C LL PL + I + L T +++ EP+ +P++IS
Sbjct: 501 LTKAFGSFLYWMSPTIVSSVVFLGCALLKSAPLNASTIFTVLATLRVMSEPVKIIPDAIS 560
Query: 321 MMIQAKVPLDRIASFLCLEGLQTDVLEKMPRGNSDTAIEIIDGSFSWDFSSPNPTLRNIN 380
+IQ V R+ +FL + L+ D +E+ S TA++I G+F W+ + PTLRNI+
Sbjct: 561 AIIQGNVSFQRLNNFLLDDELKMDEIERSGLDASGTAVDIQVGNFGWEPETKIPTLRNIH 620
Query: 381 LKVFHGMRVAVCGTVGSGKSSCLSCILGGVPKESGIIRLCGTKAYVAQSPWIQSGKIEEN 440
L++ HG +VAVCG VG+GKSS L +LG +PK SG +++ G+ AYV+Q+ WIQSG I +N
Sbjct: 621 LEIKHGQKVAVCGPVGAGKSSLLHAVLGEIPKVSGTVKVFGSIAYVSQTSWIQSGTIRDN 680
Query: 441 ILFGKEMDRERYERVLEACSLKKDLEVLPFGDQTIIGERGINLSGGQKQRIQIARPLYQD 500
IL+GK M+ RY ++AC+L KD+ GD T IG+RGINLSGGQKQRIQ+AR +Y D
Sbjct: 681 ILYGKPMESRRYNAAIKACALDKDMNGFGHGDLTEIGQRGINLSGGQKQRIQLARAVYAD 740
Query: 501 ADIFLLDDPFSPVDDHTGAHLFKFCWVSS--SKTVIYATHQVEFLPAADLILVIKDGKIT 558
AD++LLDDPFS VD HT LF C S KTVI THQVEFL D ILV+++G IT
Sbjct: 741 ADVYLLDDPFSAVDAHTAGVLFHKCVEDSLKEKTVILVTHQVEFLSEVDQILVMEEGTIT 800
Query: 559 QAGKYSDILNSGTDFMELVGAHKQALSGLDSIDRGPVSERKSIN---KENDGTSTTNEIV 615
Q+GKY ++L GT F +LV AH A++ L P++ +S+ KE N V
Sbjct: 801 QSGKYEELLMMGTAFQQLVNAHNDAVTVL------PLASNESLGDLRKEGKDREIRNMTV 854
Query: 616 NKEENKNFQSDDEAALPKGQLVQEEEREKGKVGFSVYWKYMTTAYGGVLVPFILLAQIIF 675
++ + + D +P QL QEEE+E G VG + Y+ + G L+ +L Q+ F
Sbjct: 855 VEKIEEEIEKTD---IPGVQLTQEEEKESGYVGMKPFLDYIGVSRGWCLLWSSVLGQVGF 911
Query: 676 QIFQIGSNYWMAWATPVAKDVNPA-VGASTLI------IVYVGA------GYKTATQLFN 722
+FQ S YW+A+A + K N +G ++I VY A G K + F+
Sbjct: 912 VVFQAASTYWLAFAIGIPKITNTMLIGVYSIISTLSAGFVYARAITTAHLGLKASKAFFS 971
Query: 723 KMHVCIFRAPMYFFDSTPSGRILNRVSENVKWADQSAADMDIPYDIGAFAFSM---IQLL 779
+F+APM FFDSTP GRIL R S +D + D D+P+ AF F + ++L
Sbjct: 972 GFTNAVFKAPMLFFDSTPVGRILTRAS-----SDLNVLDYDVPF---AFIFVVAPAVELT 1023
Query: 780 GIIVVMSLVAWQVLIVFVPVIATFIWYQQYYITSTRELSRLIGVCKAPVIQQFSETISGS 839
+++M+ V WQV+I+ + +A Q YY+ S REL R+ G KAPV+ +ET G
Sbjct: 1024 AALLIMTYVTWQVIIIALLALAATKVVQDYYLASARELIRINGTTKAPVMNYAAETSLGV 1083
Query: 840 TTIRSLDQELRFRDTNMKLIDEYSRPKFHIAGAMEWLRFCIDMLSSITFAFSLAFLISVP 899
TIR+ RF + L+D + F AMEW+ I+ L ++T LI +P
Sbjct: 1084 VTIRAFGTAERFFKNYLNLVDADAVLFFLSNAAMEWVILRIETLQNVTLFTCALLLILIP 1143
Query: 900 NGIIHP-----------------------YKNLERKIISVERILQCACIPSEPALVIEAT 936
G I P Y L IISVERI Q IP EP +I+
Sbjct: 1144 KGYIAPGLVGLSLSYALTLTQTQVFLTRWYCTLSNSIISVERIKQYMNIPEEPPAIIDDK 1203
Query: 937 KPNNSRPSHGEVNIRHLQVRYAPNLPLVLR---------------GRTGSGKSTLIQTLF 981
+P +S PS+G ++++ L++RY PN PLVL+ GRTGSGKSTLI LF
Sbjct: 1204 RPPSSWPSNGTIHLQELKIRYRPNAPLVLKGISCTFREGTRVGVVGRTGSGKSTLISALF 1263
Query: 982 RIVESTAGHILIDGKDISLIGLHDLRTRLSIIPQDPTMFEGTTRSNLDPLEEHADEQIWE 1041
R+VE +G ILIDG DIS IGL DLR +LSIIPQ+PT+F G R+NLDPL ++D++IW+
Sbjct: 1264 RLVEPASGCILIDGIDISKIGLKDLRMKLSIIPQEPTLFRGCIRTNLDPLGVYSDDEIWK 1323
Query: 1042 ALDKCQLGDEVRKKKGKLDSQ------------------GRVLLKKSKVLVLDEATASVD 1083
AL+KCQL + KLDS GRVLLK++K+LVLDEATAS+D
Sbjct: 1324 ALEKCQLKTTISNLPNKLDSSVSDEGENWSVGQRQLFCLGRVLLKRNKILVLDEATASID 1383
Query: 1084 TATDNQIQQTLRQHFSDCTVVTIAHRITSVLDSAMVLLLNHGLIKEYDSPTKLLENKSSS 1143
+ATD IQ+ +R+ F+DCTV+T+AHR+ +V+DS MV++L+ G + EY+ P+KL+E S
Sbjct: 1384 SATDAIIQRIIREEFADCTVITVAHRVPTVIDSDMVMVLSFGDLVEYNEPSKLMET-DSY 1442
Query: 1144 FAQLVAEYTSS 1154
F++LVAEY +S
Sbjct: 1443 FSKLVAEYWAS 1453
|
Pump for glutathione S-conjugates. Arabidopsis thaliana (taxid: 3702) EC: 3 EC: . EC: 6 EC: . EC: 3 EC: . EC: 4 EC: 4 |
Close Homologs in the Non-Redundant Database Detected by BLAST 
Original result of BLAST against Nonredundant Database
GI ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 1156 | ||||||
| 356566246 | 1490 | PREDICTED: ABC transporter C family memb | 0.987 | 0.765 | 0.676 | 0.0 | |
| 359494293 | 1488 | PREDICTED: ABC transporter C family memb | 0.993 | 0.772 | 0.678 | 0.0 | |
| 356553519 | 1494 | PREDICTED: ABC transporter C family memb | 0.994 | 0.769 | 0.672 | 0.0 | |
| 359494168 | 1485 | PREDICTED: ABC transporter C family memb | 0.990 | 0.771 | 0.675 | 0.0 | |
| 224061172 | 1488 | multidrug resistance protein ABC transpo | 0.987 | 0.767 | 0.673 | 0.0 | |
| 356499431 | 2054 | PREDICTED: ABC transporter C family memb | 0.993 | 0.559 | 0.670 | 0.0 | |
| 359494289 | 1488 | PREDICTED: ABC transporter C family memb | 0.994 | 0.772 | 0.673 | 0.0 | |
| 356501620 | 1493 | PREDICTED: ABC transporter C family memb | 0.994 | 0.770 | 0.665 | 0.0 | |
| 357494883 | 1521 | Multidrug resistance protein ABC transpo | 0.987 | 0.750 | 0.648 | 0.0 | |
| 449465513 | 1504 | PREDICTED: ABC transporter C family memb | 0.993 | 0.763 | 0.650 | 0.0 |
| >gi|356566246|ref|XP_003551345.1| PREDICTED: ABC transporter C family member 3-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 1695 bits (4390), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 861/1272 (67%), Positives = 981/1272 (77%), Gaps = 131/1272 (10%)
Query: 2 VTPYSNAGLFSIRSFSWMGSLIALGNKRTLDLEDVPRLDCSDSIYGVSPVLQNKLEAV-- 59
VTP+S+AG+FS+ +FSW+G L+A+GNK+TLDLEDVP+LD DS+ G P ++KLEA
Sbjct: 222 VTPFSHAGVFSVLTFSWVGPLVAVGNKKTLDLEDVPQLDTKDSVVGAFPSFRDKLEADCD 281
Query: 60 VGVANRLTALRLAKVLFFSAWQEILFIAILALLYTLATYVGPYLIDNFVQYLNGRQAFEY 119
N +T L+L K L SAW+EILF A LALL TLA+YVGPYLID FVQYL+GR+ +E
Sbjct: 282 ANAINSITTLKLVKNLAKSAWKEILFTAFLALLNTLASYVGPYLIDVFVQYLDGRRQYEN 341
Query: 120 EGYVL-----------CLSERHWFFQVQQFGIRFRATLFAMIYNKGLTLSGQAKQGNTSG 168
+GYVL CLS+RHWFF++QQ GIR RA L MIYNK LTLS Q+KQG+TSG
Sbjct: 342 QGYVLVFVFFFAKIVECLSQRHWFFRLQQIGIRMRALLVTMIYNKALTLSCQSKQGHTSG 401
Query: 169 EIINLIAVDAER--------------------ALLILYKKLGLASIATLLATAIVMLANF 208
EIIN + VDAER ALLILYK LGLASIA L+AT +VMLAN
Sbjct: 402 EIINFMTVDAERVGNFSWYMHDLWMVALQVVLALLILYKSLGLASIAALVATVVVMLANV 461
Query: 209 PLGRLREKFQDKFMETKDRRIKATSEILRNMRILKLQGWELK---------KNETAWLKK 259
PLG L+EKFQ+K ME+KD R+KATSEILRNMRILKLQGWE+K K E WLKK
Sbjct: 462 PLGSLQEKFQNKLMESKDTRMKATSEILRNMRILKLQGWEMKFLSKVIELRKTEQGWLKK 521
Query: 260 SVYTEAMISFFCWGAPTFVSVVTFGSCILLGIPLESGMILSALTTFKILQEPIYYLPESI 319
VYT AM +F WGAPTF+SVVTFG+C+L+GIPLESG ILSAL TF+ILQEPIY LP++I
Sbjct: 522 YVYTAAMTTFVFWGAPTFISVVTFGTCMLIGIPLESGKILSALATFRILQEPIYNLPDTI 581
Query: 320 SMMIQAKVPLDRIASFLCLEGLQTDVLEKMPRGNSDTAIEIIDGSFSWDFSSPNPTLRNI 379
SM+ Q KV LDRI+SFLCL+ L++DV+EK+PRG+SDTAIE+IDG+FSWD SSPNP L+NI
Sbjct: 582 SMIAQTKVSLDRISSFLCLDDLRSDVVEKLPRGSSDTAIEVIDGTFSWDLSSPNPKLQNI 641
Query: 380 NLKVFHGMRVAVCGTVGSGKSSCLSCILGGVPKESGIIRLCGTKAYVAQSPWIQSGKIEE 439
N+KVFHGMRVAVCGTVGSGKS+ LSC+LG VPK SGI+++CGTKAYVAQSPWIQSGKIE+
Sbjct: 642 NIKVFHGMRVAVCGTVGSGKSTLLSCVLGEVPKISGILKVCGTKAYVAQSPWIQSGKIED 701
Query: 440 NILFGKEMDRERYERVLEACSLKKDLEVLPFGDQTIIGERGINLSGGQKQRIQIARPLYQ 499
NILFG+ MDRERYE+VLEACSLKKDLE+L FGDQT+IGERGINLSGGQKQRIQIAR LYQ
Sbjct: 702 NILFGERMDRERYEKVLEACSLKKDLEILSFGDQTVIGERGINLSGGQKQRIQIARALYQ 761
Query: 500 DADIFLLDDPFSPVDDHTGAHLFKFCWVS--SSKTVIYATHQVEFLPAADLILVIKDGKI 557
DADI+L DDPFS VD HTG+HLFK C + SSKTV+Y THQVEFLPAADLILV+KDGKI
Sbjct: 762 DADIYLFDDPFSAVDAHTGSHLFKECLLGLLSSKTVVYVTHQVEFLPAADLILVMKDGKI 821
Query: 558 TQAGKYSDILNSGTDFMELVGAHKQALSGLDSIDRGPVSERKSINKENDGTSTTNEIVNK 617
TQ GKY+D+LNSGTDFMELVGAHK+ALS LDS+D S S +++ S+ + K
Sbjct: 822 TQCGKYTDLLNSGTDFMELVGAHKKALSTLDSLDEVAKSNEISTLEQDVNVSSPHVFKEK 881
Query: 618 EENKNFQSDDEAALPKGQLVQEEEREKGKVGFSVYWKYMTTAYGGVLVPFILLAQIIFQI 677
E ++ PKGQLVQEEEREKGKVGF VYW Y+TTAYGG LVPFILLAQI+F+
Sbjct: 882 EASRE--------EPKGQLVQEEEREKGKVGFLVYWNYITTAYGGALVPFILLAQILFEA 933
Query: 678 FQIGSNYWMAWATPVAKDVNPAVGASTLIIVY------------------VGAGYKTATQ 719
QIGSNYWMAWATP++ DV P VG +TLI+VY V GYKTAT
Sbjct: 934 LQIGSNYWMAWATPISTDVEPPVGGTTLIVVYVVLAVGSSFCVLVRSMLLVTVGYKTATI 993
Query: 720 LFNKMHVCIFRAPMYFFDSTPSGRILNRVSENVKWADQSAADMDIPYDIGAFAFSMIQLL 779
LFNKMH CIFRAPM FFDSTPSGR+LNR S DQS D DIPY IG+FAFSMIQLL
Sbjct: 994 LFNKMHFCIFRAPMSFFDSTPSGRVLNRAS-----TDQSTVDTDIPYQIGSFAFSMIQLL 1048
Query: 780 GIIVVMSLVAWQVLIVFVPVIATFIWYQQYYITSTRELSRLIGVCKAPVIQQFSETISGS 839
GII VMS VAWQV IVF+PVIA IWYQQYYI S RELSRL+GVCKAP+IQ F+ETISG+
Sbjct: 1049 GIIAVMSQVAWQVFIVFIPVIAVSIWYQQYYIPSARELSRLVGVCKAPIIQHFAETISGT 1108
Query: 840 TTIRSLDQELRFRDTNMKLIDEYSRPKFHIAGAMEWLRFCIDMLSSITFAFSLAFLISVP 899
+TIRS DQ+ RF++TNMKL D YSRPKF+IAGAMEWL F +DMLSSITFAFSL FLIS+P
Sbjct: 1109 STIRSFDQQSRFQETNMKLTDGYSRPKFNIAGAMEWLCFRLDMLSSITFAFSLIFLISIP 1168
Query: 900 NGIIHP-----------------------YKNLERKIISVERILQCACIPSEPALVIEAT 936
GII P NLE KIISVERILQ IP EP LV+E
Sbjct: 1169 TGIIDPGIAGLAVTYGLNLNMIQAWVIWNLCNLENKIISVERILQYTSIPCEPPLVVEDN 1228
Query: 937 KPNNSRPSHGEVNIRHLQVRYAPNLPLVLR---------------GRTGSGKSTLIQTLF 981
+P+ S P +GEV+I+ LQVRYAP+LPLVLR GRTGSGKSTLIQTLF
Sbjct: 1229 RPDPSWPLYGEVDIQDLQVRYAPHLPLVLRGLTCKFHGGMKTGIVGRTGSGKSTLIQTLF 1288
Query: 982 RIVESTAGHILIDGKDISLIGLHDLRTRLSIIPQDPTMFEGTTRSNLDPLEEHADEQIWE 1041
RIVE T+G ++ID +IS IGLHDLR+RLSIIPQDPTMFEGT R+NLDPLEE+ DEQIWE
Sbjct: 1289 RIVEPTSGQVMIDNINISSIGLHDLRSRLSIIPQDPTMFEGTVRNNLDPLEEYTDEQIWE 1348
Query: 1042 ALDKCQLGDEVRKKKGKLDSQ------------------GRVLLKKSKVLVLDEATASVD 1083
ALDKCQLGDEVRKK+GKLDS GRVLLKKSKVLVLDEATASVD
Sbjct: 1349 ALDKCQLGDEVRKKEGKLDSTVSENGENWSMGQRQLVCLGRVLLKKSKVLVLDEATASVD 1408
Query: 1084 TATDNQIQQTLRQHFSDCTVVTIAHRITSVLDSAMVLLLNHGLIKEYDSPTKLLENKSSS 1143
TATDN IQQTLRQHFSD TV+TIAHRITSVLDS MVLLL+ GLI+EYD+PT LLENKSSS
Sbjct: 1409 TATDNLIQQTLRQHFSDSTVITIAHRITSVLDSDMVLLLSQGLIEEYDTPTTLLENKSSS 1468
Query: 1144 FAQLVAEYTSSS 1155
FAQLVAEYT S
Sbjct: 1469 FAQLVAEYTMRS 1480
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|359494293|ref|XP_003634755.1| PREDICTED: ABC transporter C family member 3-like [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 1692 bits (4383), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 863/1272 (67%), Positives = 983/1272 (77%), Gaps = 123/1272 (9%)
Query: 2 VTPYSNAGLFSIRSFSWMGSLIALGNKRTLDLEDVPRLDCSDSIYGVSPVLQNKLEAVVG 61
VTP+S AG FS+ +FSW+G LIA GNK+TLDLEDVP+LD S+S+ GV P NKL+ G
Sbjct: 212 VTPFSKAGFFSLLTFSWIGPLIAEGNKKTLDLEDVPQLDTSNSVAGVFPAFSNKLQCDSG 271
Query: 62 VANRLTALRLAKVLFFSAWQEILFIAILALLYTLATYVGPYLIDNFVQYLNGRQAFEYEG 121
++ +T L+L K L F+ W EIL A L L+ TLA+YVGPYLID FVQYLNGR+ F+ EG
Sbjct: 272 GSSGVTTLKLVKALIFACWAEILLTAFLVLVKTLASYVGPYLIDTFVQYLNGRREFKNEG 331
Query: 122 YVLC-----------LSERHWFFQVQQFGIRFRATLFAMIYNKGLTLSGQAKQGNTSGEI 170
Y+L LS RHWFF++QQ GIR RA L MIYNKGLTLS Q+KQG+++GEI
Sbjct: 332 YLLAMAFFVAKLVERLSVRHWFFRLQQVGIRIRAVLITMIYNKGLTLSCQSKQGHSTGEI 391
Query: 171 INLIAVDAER--------------------ALLILYKKLGLASIATLLATAIVMLANFPL 210
IN ++VDAER ALLILYK LGLAS+A AT IVML N PL
Sbjct: 392 INFMSVDAERIGDFSWYMHDPWMVIVQVTLALLILYKNLGLASVAAFFATVIVMLTNVPL 451
Query: 211 GRLREKFQDKFMETKDRRIKATSEILRNMRILKLQGWELK---------KNETAWLKKSV 261
G+ +EKFQDK ME+KD+R+KATSEILRNMRILKLQGWE+K KNET WLKK +
Sbjct: 452 GKWQEKFQDKLMESKDKRMKATSEILRNMRILKLQGWEMKFLSKIVDLRKNETGWLKKYL 511
Query: 262 YTEAMISFFCWGAPTFVSVVTFGSCILLGIPLESGMILSALTTFKILQEPIYYLPESISM 321
YT A+ +F WGAPTFVSV TFG+C+LLGIPLESG ILS+L TF+ILQEPIY LP+ ISM
Sbjct: 512 YTSAVTTFVFWGAPTFVSVATFGTCMLLGIPLESGKILSSLATFRILQEPIYSLPDLISM 571
Query: 322 MIQAKVPLDRIASFLCLEGLQTDVLEKMPRGNSDTAIEIIDGSFSWDFSSPNPTLRNINL 381
+ Q KV LDRIASFL L+ L +DV+E++P+G+SDTAIEI+DG+FSWD SSPNPTL++INL
Sbjct: 572 IAQTKVSLDRIASFLRLDDLPSDVIERLPKGSSDTAIEIVDGNFSWDLSSPNPTLKDINL 631
Query: 382 KVFHGMRVAVCGTVGSGKSSCLSCILGGVPKESGIIRLCGTKAYVAQSPWIQSGKIEENI 441
+V GMRVAVCGTVGSGKSS LSC+LG VPK SGI++LCGTKAYVAQSPWIQSGKIEENI
Sbjct: 632 RVCRGMRVAVCGTVGSGKSSLLSCMLGEVPKISGILKLCGTKAYVAQSPWIQSGKIEENI 691
Query: 442 LFGKEMDRERYERVLEACSLKKDLEVLPFGDQTIIGERGINLSGGQKQRIQIARPLYQDA 501
LFGKEM+RERYERVL+ACSLKKDLEVL FGDQT+IGE GIN+SGGQKQRIQIAR LYQ+A
Sbjct: 692 LFGKEMERERYERVLDACSLKKDLEVLSFGDQTVIGEWGINMSGGQKQRIQIARALYQNA 751
Query: 502 DIFLLDDPFSPVDDHTGAHLFKFCW--VSSSKTVIYATHQVEFLPAADLILVIKDGKITQ 559
DI+L DDPFS VD HTG HLFK C +S SKTVIY THQVEFLPAADLILV+KDG++TQ
Sbjct: 752 DIYLFDDPFSAVDAHTGTHLFKECLLGLSGSKTVIYVTHQVEFLPAADLILVMKDGRVTQ 811
Query: 560 AGKYSDILNSGTDFMELVGAHKQALSGLDSIDRGPVSERKSINKENDGTSTTNEIVNKEE 619
AGKY++ILNSGTDFMELVGAHK+AL L+S++ G +SE+ SI +++D T+E+V KEE
Sbjct: 812 AGKYNEILNSGTDFMELVGAHKKALLALNSVEAGSLSEKLSILEDSDNIGGTSEVVEKEE 871
Query: 620 NKNFQSD--DEAALPKGQLVQEEEREKGKVGFSVYWKYMTTAYGGVLVPFILLAQIIFQI 677
N+ Q+ +E PKGQLVQEEEREKGKVG VYWKY+ TAYGG LVPFILL+QI+FQ+
Sbjct: 872 NRGGQNGKAEEIDGPKGQLVQEEEREKGKVGLWVYWKYIRTAYGGALVPFILLSQILFQL 931
Query: 678 FQIGSNYWMAWATPVAKDVNPAVGASTLIIVYVG------------------AGYKTATQ 719
QIGSNYWMAWA+PV+ DV PAV STLIIVYV AGYKTAT
Sbjct: 932 LQIGSNYWMAWASPVSDDVKPAVRGSTLIIVYVALAVGSSFCVLSRAMLLVTAGYKTATI 991
Query: 720 LFNKMHVCIFRAPMYFFDSTPSGRILNRVSENVKWADQSAADMDIPYDIGAFAFSMIQLL 779
LFNKMH+C+FRAPM FFD+TPSGRILNR S ADQS D +P +GAFAF +IQLL
Sbjct: 992 LFNKMHLCVFRAPMSFFDATPSGRILNRAS-----ADQSTIDTTMPMQVGAFAFQLIQLL 1046
Query: 780 GIIVVMSLVAWQVLIVFVPVIATFIWYQQYYITSTRELSRLIGVCKAPVIQQFSETISGS 839
GII VMS VAWQV IVF+PVIAT IWYQQYYI S RELSRL GVCKAPVIQ FSETI+GS
Sbjct: 1047 GIIAVMSQVAWQVFIVFIPVIATCIWYQQYYIPSARELSRLAGVCKAPVIQHFSETIAGS 1106
Query: 840 TTIRSLDQELRFRDTNMKLIDEYSRPKFHIAGAMEWLRFCIDMLSSITFAFSLAFLISVP 899
TIRS DQE RFRDTNMKL+D Y RPKF+IAGAMEWL F +DMLSS+TFAFSL FLISVP
Sbjct: 1107 MTIRSFDQESRFRDTNMKLVDGYLRPKFNIAGAMEWLCFRLDMLSSVTFAFSLVFLISVP 1166
Query: 900 NGIIHP-----------------------YKNLERKIISVERILQCACIPSEPALVIEAT 936
G+I P N+E KIISVERILQ IPSEP LV E
Sbjct: 1167 EGVIDPGIAGLAMTYGLNLNMIQARVIWNLCNMENKIISVERILQYTSIPSEPPLVTEEN 1226
Query: 937 KPNNSRPSHGEVNIRHLQVRYAPNLPLVLR---------------GRTGSGKSTLIQTLF 981
+ S PSHGEV+I+ LQVRYAP++PLVLR GRTGSGKSTLIQTLF
Sbjct: 1227 RLACSWPSHGEVDIQDLQVRYAPHMPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLF 1286
Query: 982 RIVESTAGHILIDGKDISLIGLHDLRTRLSIIPQDPTMFEGTTRSNLDPLEEHADEQIWE 1041
RIVE AG I+IDG +IS IGL+DLRTRLSIIPQDPTMFEGT RSNLDPLEEH+DEQIWE
Sbjct: 1287 RIVEPAAGQIMIDGTNISSIGLNDLRTRLSIIPQDPTMFEGTVRSNLDPLEEHSDEQIWE 1346
Query: 1042 ALDKCQLGDEVRKKKGKLDSQ------------------GRVLLKKSKVLVLDEATASVD 1083
ALDKCQLGDEVRKK+GKLDS GRVLLKKSKVLVLDEATASVD
Sbjct: 1347 ALDKCQLGDEVRKKEGKLDSAVIENGENWSMGQRQLVCLGRVLLKKSKVLVLDEATASVD 1406
Query: 1084 TATDNQIQQTLRQHFSDCTVVTIAHRITSVLDSAMVLLLNHGLIKEYDSPTKLLENKSSS 1143
TATDN IQQTLRQHF D TV+TIAHRITSVLDS VLLL+HGLI+EYD+PT+LLENKSSS
Sbjct: 1407 TATDNLIQQTLRQHFVDSTVITIAHRITSVLDSDKVLLLDHGLIEEYDTPTRLLENKSSS 1466
Query: 1144 FAQLVAEYTSSS 1155
FA+LVAEYT S
Sbjct: 1467 FAKLVAEYTVRS 1478
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356553519|ref|XP_003545103.1| PREDICTED: ABC transporter C family member 3-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 1682 bits (4355), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 856/1273 (67%), Positives = 979/1273 (76%), Gaps = 123/1273 (9%)
Query: 2 VTPYSNAGLFSIRSFSWMGSLIALGNKRTLDLEDVPRLDCSDSIYGVSPVLQNKLEAVVG 61
VTP+S AG SI +FSW+G LIA+GNK+TLDLEDVP+LD DS+ G P + KLEA G
Sbjct: 218 VTPFSYAGFLSILTFSWVGPLIAVGNKKTLDLEDVPQLDGRDSVIGAFPSFREKLEADCG 277
Query: 62 VANRLTALRLAKVLFFSAWQEILFIAILALLYTLATYVGPYLIDNFVQYLNGRQAFEYEG 121
NR+T L+LAK L SAW+EIL A LALL TLA+YVGPYLID FVQYL+G++ +E +G
Sbjct: 278 GINRVTTLKLAKSLIMSAWKEILITAFLALLNTLASYVGPYLIDGFVQYLDGQRLYENQG 337
Query: 122 YVL-----------CLSERHWFFQVQQFGIRFRATLFAMIYNKGLTLSGQAKQGNTSGEI 170
Y L CL++RHW F++QQ G+R RA L MIYNK LTLS Q+KQG+TSGEI
Sbjct: 338 YFLVSAFFFAKLVECLTQRHWIFKLQQVGLRIRALLVTMIYNKALTLSCQSKQGHTSGEI 397
Query: 171 INLIAVDAER--------------------ALLILYKKLGLASIATLLATAIVMLANFPL 210
IN + VDAER ALLILYK LGLASIA L+AT ++MLAN PL
Sbjct: 398 INFMTVDAERVGVFSWYMHDLWMVALQVTLALLILYKNLGLASIAALVATVVIMLANVPL 457
Query: 211 GRLREKFQDKFMETKDRRIKATSEILRNMRILKLQGWELK---------KNETAWLKKSV 261
G L+EKFQ K ME+KD R+KATSEILRNMRILKLQGWE+K KNE WLKK V
Sbjct: 458 GSLQEKFQKKLMESKDTRMKATSEILRNMRILKLQGWEIKFLSKITELRKNEQGWLKKYV 517
Query: 262 YTEAMISFFCWGAPTFVSVVTFGSCILLGIPLESGMILSALTTFKILQEPIYYLPESISM 321
YT A+ +F WG+PTFVSVVTFG+C+L+GIPLESG ILSAL TF+ILQEPIY LP++ISM
Sbjct: 518 YTAAVTTFVFWGSPTFVSVVTFGTCMLIGIPLESGKILSALATFRILQEPIYRLPDTISM 577
Query: 322 MIQAKVPLDRIASFLCLEGLQTDVLEKMPRGNSDTAIEIIDGSFSWDFSSPNPTLRNINL 381
+ Q KV LDRI SFL L+ L++DV+EK+P G+SDTAIE++DG+FSWD SSPNPTL+NINL
Sbjct: 578 IAQTKVSLDRIVSFLRLDDLRSDVVEKLPWGSSDTAIEVVDGNFSWDLSSPNPTLQNINL 637
Query: 382 KVFHGMRVAVCGTVGSGKSSCLSCILGGVPKESGIIRLCGTKAYVAQSPWIQSGKIEENI 441
KVFHGMRVAVCGTVGSGKS+ LSC+LG VPK SGI+++CGTKAYVAQSPWIQSGKIE+NI
Sbjct: 638 KVFHGMRVAVCGTVGSGKSTLLSCVLGEVPKISGILKVCGTKAYVAQSPWIQSGKIEDNI 697
Query: 442 LFGKEMDRERYERVLEACSLKKDLEVLPFGDQTIIGERGINLSGGQKQRIQIARPLYQDA 501
LFG+ MDRERYE+VLEACSLKKDLE+L FGDQTIIGERGINLSGGQKQRIQIAR LYQDA
Sbjct: 698 LFGERMDRERYEKVLEACSLKKDLEILSFGDQTIIGERGINLSGGQKQRIQIARALYQDA 757
Query: 502 DIFLLDDPFSPVDDHTGAHLFKFCWVS--SSKTVIYATHQVEFLPAADLILVIKDGKITQ 559
DI+L DDPFS VD HTG+HLFK C + SSKTV+Y THQVEFLPAADLILV+KDGKITQ
Sbjct: 758 DIYLFDDPFSAVDAHTGSHLFKECLLGLLSSKTVVYVTHQVEFLPAADLILVMKDGKITQ 817
Query: 560 AGKYSDILNSGTDFMELVGAHKQALSGLDSIDRGPVSERKSINKENDGTSTTNEIVNKEE 619
GKY+D+LNSG DFMELVGAHK+ALS LDS+D VS + +++ S T KE
Sbjct: 818 CGKYTDLLNSGADFMELVGAHKKALSTLDSLDGATVSNEINALEQDVNVSGTYGFKEKEA 877
Query: 620 NKNFQS--DDEAALPKGQLVQEEEREKGKVGFSVYWKYMTTAYGGVLVPFILLAQIIFQI 677
K+ Q+ D+ + P+GQLVQEEEREKGKVGFSVYWK +TTAYGG LVPFILLAQI+FQ
Sbjct: 878 RKDEQNGKTDKKSEPQGQLVQEEEREKGKVGFSVYWKCITTAYGGALVPFILLAQILFQA 937
Query: 678 FQIGSNYWMAWATPVAKDVNPAVGASTLIIVYVG------------------AGYKTATQ 719
QIGSNYWMAWATP++ DV P V +TLI VYVG AGYKTAT
Sbjct: 938 LQIGSNYWMAWATPISSDVEPPVEGTTLIAVYVGLAIGSSFCILARAMLLVTAGYKTATI 997
Query: 720 LFNKMHVCIFRAPMYFFDSTPSGRILNRVSENVKWADQSAADMDIPYDIGAFAFSMIQLL 779
LFNKMH CIFRAPM FFDSTPSGRILNR S DQSA D DIPY I +FAF MIQLL
Sbjct: 998 LFNKMHFCIFRAPMSFFDSTPSGRILNRAS-----TDQSALDTDIPYQIASFAFIMIQLL 1052
Query: 780 GIIVVMSLVAWQVLIVFVPVIATFIWYQQYYITSTRELSRLIGVCKAPVIQQFSETISGS 839
GII VMS AWQV +VF+PVIA IWYQQYYI S REL+RL+GVCKAP+IQ FSETISG+
Sbjct: 1053 GIIAVMSQAAWQVFVVFIPVIAVSIWYQQYYIPSARELARLVGVCKAPIIQHFSETISGT 1112
Query: 840 TTIRSLDQELRFRDTNMKLIDEYSRPKFHIAGAMEWLRFCIDMLSSITFAFSLAFLISVP 899
+TIRS DQ+ RF++TNMKL D YSRPKF+IAGAMEWL F +DMLSSITFAFSL FLIS+P
Sbjct: 1113 STIRSFDQQSRFQETNMKLTDGYSRPKFNIAGAMEWLCFRLDMLSSITFAFSLVFLISIP 1172
Query: 900 NGIIHP-----------------------YKNLERKIISVERILQCACIPSEPALVIEAT 936
G I P N+E KIISVERILQ CI SEP LV++
Sbjct: 1173 QGFIDPGLAGLAVTYGLNLNMIQAWMIWNLCNMENKIISVERILQYTCISSEPPLVVDEN 1232
Query: 937 KPNNSRPSHGEVNIRHLQVRYAPNLPLVLR---------------GRTGSGKSTLIQTLF 981
+P+ S PS+GEV I+ LQVRYAP+LPLVLR GRTGSGKSTLIQTLF
Sbjct: 1233 RPDPSWPSYGEVGIQDLQVRYAPHLPLVLRGLTCKFRGGLKTGIVGRTGSGKSTLIQTLF 1292
Query: 982 RIVESTAGHILIDGKDISLIGLHDLRTRLSIIPQDPTMFEGTTRSNLDPLEEHADEQIWE 1041
RIV+ T+G I+ID +IS IGLHDLR+RLSIIPQDPTMFEGT R+NLDPLEE++DEQIWE
Sbjct: 1293 RIVQPTSGQIMIDSINISSIGLHDLRSRLSIIPQDPTMFEGTVRNNLDPLEEYSDEQIWE 1352
Query: 1042 ALDKCQLGDEVRKKKGKLDSQ------------------GRVLLKKSKVLVLDEATASVD 1083
ALDKCQLGDEVRKK+GKLDS+ GRVLLKKSKVLVLDEATASVD
Sbjct: 1353 ALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKKSKVLVLDEATASVD 1412
Query: 1084 TATDNQIQQTLRQHFSDCTVVTIAHRITSVLDSAMVLLLNHGLIKEYDSPTKLLENKSSS 1143
TATDN IQQTLRQ FS TV+TIAHRITSVL S MVLLL+ GLI+EYD+PT+L+ENKSSS
Sbjct: 1413 TATDNLIQQTLRQQFSGSTVITIAHRITSVLHSDMVLLLSQGLIEEYDTPTRLIENKSSS 1472
Query: 1144 FAQLVAEYTSSSS 1156
FAQLVAEYT S+
Sbjct: 1473 FAQLVAEYTMRSN 1485
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|359494168|ref|XP_002265605.2| PREDICTED: ABC transporter C family member 3-like [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 1678 bits (4345), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 860/1273 (67%), Positives = 980/1273 (76%), Gaps = 128/1273 (10%)
Query: 2 VTPYSNAGLFSIRSFSWMGSLIALGNKRTLDLEDVPRLDCSDSIYGVSPVLQNKLEAVVG 61
VTP+SNAG+FS+ +FSWMG LIALGNK+TLDLEDVP+LD +S+ G P+ ++KLE G
Sbjct: 219 VTPFSNAGVFSLLTFSWMGPLIALGNKKTLDLEDVPQLDAVNSVVGGFPIFRSKLEGDGG 278
Query: 62 VANRLTALRLAKVLFFSAWQEILFIAILALLYTLATYVGPYLIDNFVQYLNGRQAFEYEG 121
+ +T L+L K + SAW EIL A+ ALLYTLA+YVGPYLID FVQYLNG++ F+ EG
Sbjct: 279 GGSGVTTLKLVKAMILSAWAEILLSALFALLYTLASYVGPYLIDTFVQYLNGQRQFKNEG 338
Query: 122 YVL-----------CLSERHWFFQVQQFGIRFRATLFAMIYNKGLTLSGQAKQGNTSGEI 170
Y L CLS RHWFF++QQ GIR RA L IYNK L +S +KQ +TSGEI
Sbjct: 339 YFLVSAFLVAKLVECLSMRHWFFRLQQVGIRMRAVLVTKIYNKVLAVSYHSKQCHTSGEI 398
Query: 171 INLIAVDAER--------------------ALLILYKKLGLASIATLLATAIVMLANFPL 210
IN I+VDAER ALLILYK LGLASIA AT I+MLAN PL
Sbjct: 399 INFISVDAERIGDFGWYMHDPWMVTLQVALALLILYKNLGLASIAAFFATVIIMLANVPL 458
Query: 211 GRLREKFQDKFMETKDRRIKATSEILRNMRILKLQGWELK---------KNETAWLKKSV 261
+ +EKFQDK ME+KD+R+K+TSEILRNMRILKLQGWE+K KNET WLKK V
Sbjct: 459 AKFQEKFQDKLMESKDKRMKSTSEILRNMRILKLQGWEMKFLSKIVDLRKNETGWLKKYV 518
Query: 262 YTEAMISFFCWGAPTFVSVVTFGSCILLGIPLESGMILSALTTFKILQEPIYYLPESISM 321
YT A+ +F W P FVSVV+FG+ +L+GIPLESG ILS+L TF+ILQEPIY LP++ISM
Sbjct: 519 YTLAITTFVFWVGPIFVSVVSFGTAMLMGIPLESGKILSSLATFRILQEPIYNLPDTISM 578
Query: 322 MIQAKVPLDRIASFLCLEGLQTDVLEKMPRGNSDTAIEIIDGSFSWDFSSPNPTLRNINL 381
+ Q KV LDRIASFL L+ LQ DV+EK+P+G S TAIEI++G+FSWD SSP+PTL++INL
Sbjct: 579 IAQTKVSLDRIASFLRLDDLQPDVVEKLPKGTSSTAIEIVNGNFSWDLSSPHPTLKDINL 638
Query: 382 KVFHGMRVAVCGTVGSGKSSCLSCILGGVPKESGIIRLCGTKAYVAQSPWIQSGKIEENI 441
+V HGMRVAVCG VGSGKSS LSCILG VPK SG ++L GTKAYVAQSPWIQ GKIEENI
Sbjct: 639 QVHHGMRVAVCGAVGSGKSSLLSCILGEVPKISGTLKLSGTKAYVAQSPWIQGGKIEENI 698
Query: 442 LFGKEMDRERYERVLEACSLKKDLEVLPFGDQTIIGERGINLSGGQKQRIQIARPLYQDA 501
LFGKEMDRERYERVL+AC+LKKDLE+LPFGDQT+IGERGINLSGGQKQRIQIAR LYQDA
Sbjct: 699 LFGKEMDRERYERVLDACTLKKDLEILPFGDQTVIGERGINLSGGQKQRIQIARALYQDA 758
Query: 502 DIFLLDDPFSPVDDHTGAHLFKFCWVS--SSKTVIYATHQVEFLPAADLILVIKDGKITQ 559
DI+L DDPFS VD HTG HLFK C + SKTV+Y THQVEFLPAADLILV+K+G+ITQ
Sbjct: 759 DIYLFDDPFSAVDAHTGTHLFKECLLGLLDSKTVVYVTHQVEFLPAADLILVMKEGRITQ 818
Query: 560 AGKYSDILNSGTDFMELVGAHKQALSGLDSIDRGPVSERKSINKEND-GTSTTNEIVNKE 618
AGKY+DILN G+DF+ELVGAHK+ALS L+SI+ +E+ SI EN T +T+E+V KE
Sbjct: 819 AGKYNDILNYGSDFVELVGAHKKALSALESIE----AEKSSIMSENSVDTGSTSEVVPKE 874
Query: 619 ENKNFQSDDEAAL--PKGQLVQEEEREKGKVGFSVYWKYMTTAYGGVLVPFILLAQIIFQ 676
EN+N Q+ + PK QLVQEEEREKGKVGFSVYWKY+TTAYGG LVPFILL+QI+FQ
Sbjct: 875 ENRNGQTGNIEGTDGPKAQLVQEEEREKGKVGFSVYWKYITTAYGGALVPFILLSQILFQ 934
Query: 677 IFQIGSNYWMAWATPVAKDVNPAVGASTLIIVYVG------------------AGYKTAT 718
+ QIGSNYWMAWATPV++DV PAVG STLI+VYV AGY+TAT
Sbjct: 935 LLQIGSNYWMAWATPVSEDVKPAVGGSTLILVYVALAIGSSLCVLSRAMLVVTAGYRTAT 994
Query: 719 QLFNKMHVCIFRAPMYFFDSTPSGRILNRVSENVKWADQSAADMDIPYDIGAFAFSMIQL 778
LFNKMH+ IFRAPM FFD+TPSGRILNR S DQSA DMDIP I AFS IQL
Sbjct: 995 ILFNKMHLSIFRAPMSFFDATPSGRILNRAS-----TDQSAVDMDIPMVIWKCAFSFIQL 1049
Query: 779 LGIIVVMSLVAWQVLIVFVPVIATFIWYQQYYITSTRELSRLIGVCKAPVIQQFSETISG 838
LGII VMS V WQV IVFVP+IAT IWYQ+YYI+S REL+RL+GVCKAPVIQ FSETISG
Sbjct: 1050 LGIIAVMSQVVWQVFIVFVPMIATCIWYQRYYISSARELARLVGVCKAPVIQHFSETISG 1109
Query: 839 STTIRSLDQELRFRDTNMKLIDEYSRPKFHIAGAMEWLRFCIDMLSSITFAFSLAFLISV 898
STTIRS DQE RFRDTNMKLID Y+RPKF+ A AMEWL F +D+LSSITFAFSL FLIS+
Sbjct: 1110 STTIRSFDQESRFRDTNMKLIDGYTRPKFNSAAAMEWLCFRLDVLSSITFAFSLVFLISI 1169
Query: 899 PNGIIHP-----------------------YKNLERKIISVERILQCACIPSEPALVIEA 935
P G I P N+E KIISVER+LQ IPSEP LV+E
Sbjct: 1170 PEGAIDPGIAGLAVTYGLNLNTLQAWVVWNLCNMENKIISVERMLQYTSIPSEPPLVMEG 1229
Query: 936 TKPNNSRPSHGEVNIRHLQVRYAPNLPLVLR---------------GRTGSGKSTLIQTL 980
KP S PSHGEV+IR LQVRYAP+LPLVLR GRTGSGKSTLIQTL
Sbjct: 1230 NKPACSWPSHGEVDIRDLQVRYAPHLPLVLRGLTCNFPGGMKTGIVGRTGSGKSTLIQTL 1289
Query: 981 FRIVESTAGHILIDGKDISLIGLHDLRTRLSIIPQDPTMFEGTTRSNLDPLEEHADEQIW 1040
FRIVE TAG I+IDG +ISLIGLHDLR+RLSIIPQDPTMFEGT RSNLDPLEE++DEQIW
Sbjct: 1290 FRIVEPTAGEIMIDGTNISLIGLHDLRSRLSIIPQDPTMFEGTVRSNLDPLEEYSDEQIW 1349
Query: 1041 EALDKCQLGDEVRKKKGKLDSQ------------------GRVLLKKSKVLVLDEATASV 1082
EALDKCQLGDEVRKK+GKLDS GRVLLKKSKVLVLDEATASV
Sbjct: 1350 EALDKCQLGDEVRKKEGKLDSAVNENGENWSMGQRQLVCLGRVLLKKSKVLVLDEATASV 1409
Query: 1083 DTATDNQIQQTLRQHFSDCTVVTIAHRITSVLDSAMVLLLNHGLIKEYDSPTKLLENKSS 1142
DTATDN IQQTLRQHF D TV+TIAHRITSVLDS MVLLL+HGLI+E+D+P +LLENKSS
Sbjct: 1410 DTATDNLIQQTLRQHFVDSTVITIAHRITSVLDSDMVLLLDHGLIEEHDTPARLLENKSS 1469
Query: 1143 SFAQLVAEYTSSS 1155
SFA+LVAEYT S
Sbjct: 1470 SFAKLVAEYTVRS 1482
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224061172|ref|XP_002300362.1| multidrug resistance protein ABC transporter family [Populus trichocarpa] gi|222847620|gb|EEE85167.1| multidrug resistance protein ABC transporter family [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 1677 bits (4342), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 853/1267 (67%), Positives = 975/1267 (76%), Gaps = 125/1267 (9%)
Query: 2 VTPYSNAGLFSIRSFSWMGSLIALGNKRTLDLEDVPRLDCSDSIYGVSPVLQNKLEAVVG 61
+TPY+NAGLFSI +FSWMGSLIA GNK+TLDLEDVP+L DS+ G V +NKLE+ G
Sbjct: 218 LTPYANAGLFSILTFSWMGSLIAFGNKKTLDLEDVPQLHSVDSVVGAFSVFKNKLESDSG 277
Query: 62 VANRLTALRLAKVLFFSAWQEILFIAILALLYTLATYVGPYLIDNFVQYLNGRQAFEYEG 121
A+R+TA +L K L SAW+EIL A+LA++YT A+YVGPYLID+FVQ L+GR ++ +G
Sbjct: 278 AASRVTAFKLLKALLLSAWKEILLTALLAIIYTSASYVGPYLIDSFVQCLDGRGEYKNQG 337
Query: 122 YVL-----------CLSERHWFFQVQQFGIRFRATLFAMIYNKGLTLSGQAKQGNTSGEI 170
Y+L CLS+RHWFF++QQ GIR RA MIYNK LTLS Q+KQG TSGEI
Sbjct: 338 YILASTFFVAKVVECLSQRHWFFRLQQIGIRLRAVATTMIYNKALTLSSQSKQGQTSGEI 397
Query: 171 INLIAVDAER--------------------ALLILYKKLGLASIATLLATAIVMLANFPL 210
IN++ VDAER ALLILYK LGLA+++T +AT +VML N+PL
Sbjct: 398 INIMTVDAERISDFSWYMHDPWLVILQVGLALLILYKNLGLATVSTFVATIVVMLLNYPL 457
Query: 211 GRLREKFQDKFMETKDRRIKATSEILRNMRILKLQGWELK---------KNETAWLKKSV 261
GRL+E FQDK ME+KD+R+KAT+EILRNMRILKLQGWE+K + ET WLKK V
Sbjct: 458 GRLQEHFQDKLMESKDKRMKATTEILRNMRILKLQGWEMKFLSKILDLRQVETGWLKKYV 517
Query: 262 YTEAMISFFCWGAPTFVSVVTFGSCILLGIPLESGMILSALTTFKILQEPIYYLPESISM 321
Y AMISF WGAP+ V+V TFG+C+L+G PLESG ILSAL TF+ILQEPIY LP+++SM
Sbjct: 518 YNSAMISFVFWGAPSLVAVATFGTCMLIGTPLESGKILSALATFRILQEPIYNLPDTVSM 577
Query: 322 MIQAKVPLDRIASFLCLEGLQTDVLEKMPRGNSDTAIEIIDGSFSWDFSSPNPTLRNINL 381
++Q KV LDRIASF+ L+ L+ DVLEK+P G+SDTA+EI+DG+FSWD SSP+ TL+NI+
Sbjct: 578 IVQTKVSLDRIASFISLDDLKNDVLEKLPIGSSDTAVEIVDGNFSWDVSSPSATLKNIDF 637
Query: 382 KVFHGMRVAVCGTVGSGKSSCLSCILGGVPKESGIIRLCGTKAYVAQSPWIQSGKIEENI 441
+VFHGMRVAVCGTVGSGKSS LSCILG VP+ SG +++CGTKAYVAQSPWIQSGKIEENI
Sbjct: 638 QVFHGMRVAVCGTVGSGKSSLLSCILGEVPQISGTLKICGTKAYVAQSPWIQSGKIEENI 697
Query: 442 LFGKEMDRERYERVLEACSLKKDLEVLPFGDQTIIGERGINLSGGQKQRIQIARPLYQDA 501
LFGK+MDRERYERVLEACSLKKDLE+L FGDQT+IGERGINLSGGQKQRIQIAR LYQDA
Sbjct: 698 LFGKDMDRERYERVLEACSLKKDLEILSFGDQTVIGERGINLSGGQKQRIQIARALYQDA 757
Query: 502 DIFLLDDPFSPVDDHTGAHLFKFCWVS--SSKTVIYATHQVEFLPAADLILVIKDGKITQ 559
DI+L DDPFS VD HTG+HLFK + +SKTVIY THQVEFLPAADLILV+KDG+ITQ
Sbjct: 758 DIYLFDDPFSAVDAHTGSHLFKEALLGLLNSKTVIYVTHQVEFLPAADLILVMKDGRITQ 817
Query: 560 AGKYSDILNSGTDFMELVGAHKQALSGLDSIDRGPVSERKSINKENDGTSTTNEIVNKEE 619
AGKY DILNSG+DFMELVGAHK ALS DS SE +S KEN S+ + I+ KE
Sbjct: 818 AGKYDDILNSGSDFMELVGAHKAALSAFDSKQAESASENESAGKEN---SSGDRILQKEG 874
Query: 620 NKNFQS--DDEAALPKGQLVQEEEREKGKVGFSVYWKYMTTAYGGVLVPFILLAQIIFQI 677
NK+ Q+ +D A PK QL+QEEEREKG VGF +YWK++TTAYGG LVPFILLAQI+FQI
Sbjct: 875 NKDSQNGKEDVVAGPKAQLIQEEEREKGSVGFPIYWKFITTAYGGALVPFILLAQILFQI 934
Query: 678 FQIGSNYWMAWATPVAKDVNPAVGASTLIIVY------------------VGAGYKTATQ 719
QIGSNYWMAWATPV+KD+ P V TLI+VY V AGYKTAT
Sbjct: 935 LQIGSNYWMAWATPVSKDMKPVVSGYTLIMVYVCLAIGSSFCILARATLLVTAGYKTATL 994
Query: 720 LFNKMHVCIFRAPMYFFDSTPSGRILNRVSENVKWADQSAADMDIPYDIGAFAFSMIQLL 779
LFNKMH+CIFRAPM FFDSTPSGRILNR S DQSA + IPY +GA AFS IQLL
Sbjct: 995 LFNKMHLCIFRAPMSFFDSTPSGRILNRAS-----TDQSAVETQIPYQVGALAFSSIQLL 1049
Query: 780 GIIVVMSLVAWQVLIVFVPVIATFIWYQQYYITSTRELSRLIGVCKAPVIQQFSETISGS 839
GII VMS VAWQV IVF+PVIA IWYQ+YYI S RELSRL+GVCKAPVIQ FSETISG+
Sbjct: 1050 GIIAVMSQVAWQVFIVFIPVIAACIWYQRYYIPSARELSRLVGVCKAPVIQHFSETISGA 1109
Query: 840 TTIRSLDQELRFRDTNMKLIDEYSRPKFHIAGAMEWLRFCIDMLSSITFAFSLAFLISVP 899
TIRS DQ+ RF++TNM + D YSRPKFH A AMEWL F +DM SSITFAFSL FL+S P
Sbjct: 1110 ATIRSFDQQSRFQETNMIVTDAYSRPKFHAAAAMEWLCFRLDMFSSITFAFSLVFLVSFP 1169
Query: 900 NGI----------------------IHPYKNLERKIISVERILQCACIPSEPALVIEATK 937
GI I N E KIISVERILQ IPSEP L+IEA++
Sbjct: 1170 KGIDPAIAGLAVTYGLNLNMLQAWVIWNLCNCENKIISVERILQYMSIPSEPPLIIEASR 1229
Query: 938 PNNSRPSHGEVNIRHLQVRYAPNLPLVLR---------------GRTGSGKSTLIQTLFR 982
PN S PSHGEV I +LQVRYAP++PLVLR GRTGSGKSTLIQTLFR
Sbjct: 1230 PNRSWPSHGEVEINNLQVRYAPHMPLVLRGLTCTFPGGMKTGIVGRTGSGKSTLIQTLFR 1289
Query: 983 IVESTAGHILIDGKDISLIGLHDLRTRLSIIPQDPTMFEGTTRSNLDPLEEHADEQIWEA 1042
IVE AG I+ID DISLIGLHDLR+RLSIIPQDPTMFEGT RSNLDPLEE+ DEQIWEA
Sbjct: 1290 IVEPAAGRIMIDDIDISLIGLHDLRSRLSIIPQDPTMFEGTVRSNLDPLEEYTDEQIWEA 1349
Query: 1043 LDKCQLGDEVRKKKGKLDSQ------------------GRVLLKKSKVLVLDEATASVDT 1084
LDKCQLGDEVRKK+ KLDS GRVLLKKSKVLVLDEATASVDT
Sbjct: 1350 LDKCQLGDEVRKKERKLDSTVIENGENWSMGQRQLVCLGRVLLKKSKVLVLDEATASVDT 1409
Query: 1085 ATDNQIQQTLRQHFSDCTVVTIAHRITSVLDSAMVLLLNHGLIKEYDSPTKLLENKSSSF 1144
+TDN IQQTLRQHFSDCTV+TIAHRITSVLDS MVLLL++GLI+EYDSP +LLENKSSSF
Sbjct: 1410 STDNLIQQTLRQHFSDCTVITIAHRITSVLDSDMVLLLSNGLIEEYDSPARLLENKSSSF 1469
Query: 1145 AQLVAEY 1151
AQLVAEY
Sbjct: 1470 AQLVAEY 1476
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356499431|ref|XP_003518544.1| PREDICTED: ABC transporter C family member 3-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 1677 bits (4342), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 854/1274 (67%), Positives = 983/1274 (77%), Gaps = 125/1274 (9%)
Query: 2 VTPYSNAGLFSIRSFSWMGSLIALGNKRTLDLEDVPRLDCSDSIYGVSPVLQNKLEAVVG 61
VTP+S AG+ SI +FSW+G LIA+GNK+TLDLEDVP+LD DS+ G P + K+EA G
Sbjct: 778 VTPFSYAGILSILTFSWVGPLIAVGNKKTLDLEDVPQLDSRDSVIGAFPTFREKVEADCG 837
Query: 62 VANRLTALRLAKVLFFSAWQEILFIAILALLYTLATYVGPYLIDNFVQYLNGRQAFEYEG 121
N +T L+L K L SAW+EIL A L LL TLA+YVGPYLID FVQYL+G++ +E +G
Sbjct: 838 GINSVTTLKLVKSLIISAWKEILITAFLVLLNTLASYVGPYLIDGFVQYLDGQRLYENQG 897
Query: 122 YVL-----------CLSERHWFFQVQQFGIRFRATLFAMIYNKGLTLSGQAKQGNTSGEI 170
Y L CL++RHWFF++QQ G+R RA L MIYNK LTLS Q+KQG+TSGEI
Sbjct: 898 YFLVSAFFFAKLVECLTQRHWFFRLQQVGLRIRALLVTMIYNKALTLSCQSKQGHTSGEI 957
Query: 171 INLIAVDAER--------------------ALLILYKKLGLASIATLLATAIVMLANFPL 210
IN + VDAER ALLILYK LGLASIA +AT +MLAN PL
Sbjct: 958 INFMTVDAERVGVFSWYMHDLWMVALQVTLALLILYKNLGLASIAAFVATVAIMLANVPL 1017
Query: 211 GRLREKFQDKFMETKDRRIKATSEILRNMRILKLQGWELK---------KNETAWLKKSV 261
G L+EKFQ K ME+KD R+KATSEILRNMRILKLQGWE+K KNE WLKK V
Sbjct: 1018 GSLQEKFQKKLMESKDTRMKATSEILRNMRILKLQGWEMKFLSKITELRKNEQGWLKKYV 1077
Query: 262 YTEAMISFFCWGAPTFVSVVTFGSCILLGIPLESGMILSALTTFKILQEPIYYLPESISM 321
YT A+ +F WG+PTFVSVVTFG+C+L+GIPLESG ILSAL TF+ILQEPIY LP++ISM
Sbjct: 1078 YTAAVTTFVFWGSPTFVSVVTFGTCMLMGIPLESGKILSALATFRILQEPIYGLPDTISM 1137
Query: 322 MIQAKVPLDRIASFLCLEGLQTDVLEKMPRGNSDTAIEIIDGSFSWDFSSPNPTLRNINL 381
+ Q KV LDRI SFL L+ L++DV+EK+P G+SDTAIE++DG+FSWD SSP+PTL+NINL
Sbjct: 1138 IAQTKVSLDRIVSFLRLDDLRSDVVEKLPWGSSDTAIEVVDGNFSWDLSSPSPTLQNINL 1197
Query: 382 KVFHGMRVAVCGTVGSGKSSCLSCILGGVPKESGIIRLCGTKAYVAQSPWIQSGKIEENI 441
KVFHGMRVAVCGTVGSGKS+ LSC+LG VPK SGI+++CGTKAYVAQSPWIQSGKIE+NI
Sbjct: 1198 KVFHGMRVAVCGTVGSGKSTLLSCVLGEVPKISGILKVCGTKAYVAQSPWIQSGKIEDNI 1257
Query: 442 LFGKEMDRERYERVLEACSLKKDLEVLPFGDQTIIGERGINLSGGQKQRIQIARPLYQDA 501
LFG+ MDR+RYE+VLEACSLKKDLE+L FGDQTIIGERGINLSGGQKQRIQIAR LYQDA
Sbjct: 1258 LFGERMDRDRYEKVLEACSLKKDLEILSFGDQTIIGERGINLSGGQKQRIQIARALYQDA 1317
Query: 502 DIFLLDDPFSPVDDHTGAHLFKFCWVS--SSKTVIYATHQVEFLPAADLILVIKDGKITQ 559
DI+L DDPFS VD HTG+HLFK C + SKTV+Y THQVEFLPAADLILV+KDGKITQ
Sbjct: 1318 DIYLFDDPFSAVDAHTGSHLFKECLLGLLCSKTVVYVTHQVEFLPAADLILVMKDGKITQ 1377
Query: 560 AGKYSDILNSGTDFMELVGAHKQALSGLDSIDRGPVSERKSINKENDGTSTTNEIVNKEE 619
GKY+D+LNSG DFMELVGAHK+ALS LDS+D VS S+ +++ S T+ KE
Sbjct: 1378 CGKYTDLLNSGADFMELVGAHKKALSTLDSLDGAAVSNEISVLEQDVNVSDTHGFKEKEA 1437
Query: 620 NK---NFQSDDEAALPKGQLVQEEEREKGKVGFSVYWKYMTTAYGGVLVPFILLAQIIFQ 676
+K N Q+D+++ L +GQLVQEEEREKGKVGFSVYWK +TTAYGG LVPFILLAQI+FQ
Sbjct: 1438 SKDEQNGQTDNKSEL-QGQLVQEEEREKGKVGFSVYWKCITTAYGGALVPFILLAQILFQ 1496
Query: 677 IFQIGSNYWMAWATPVAKDVNPAVGASTLIIVYVG------------------AGYKTAT 718
QIGSNYWMAWATP+++DV P V +TLI VYVG AGYKTAT
Sbjct: 1497 ALQIGSNYWMAWATPISEDVQPPVEGTTLIAVYVGLAIGSSFCILARAILLVTAGYKTAT 1556
Query: 719 QLFNKMHVCIFRAPMYFFDSTPSGRILNRVSENVKWADQSAADMDIPYDIGAFAFSMIQL 778
LFNKMH CIFRAPM FFDSTPSGRILNR S DQSA D DIPY I +FAF +IQL
Sbjct: 1557 ILFNKMHFCIFRAPMSFFDSTPSGRILNRAS-----TDQSALDTDIPYQIASFAFILIQL 1611
Query: 779 LGIIVVMSLVAWQVLIVFVPVIATFIWYQQYYITSTRELSRLIGVCKAPVIQQFSETISG 838
LGII VMS AWQV IVF+PVIA I YQQYYI S RELSRL+GVCKAP+IQ F+ETISG
Sbjct: 1612 LGIIGVMSQAAWQVFIVFIPVIAISILYQQYYIPSARELSRLVGVCKAPIIQHFAETISG 1671
Query: 839 STTIRSLDQELRFRDTNMKLIDEYSRPKFHIAGAMEWLRFCIDMLSSITFAFSLAFLISV 898
++TIRS DQ+ RF++TNMKL D YSRPKF+IAGAMEWL F +DMLSSITFAFSL FLIS+
Sbjct: 1672 TSTIRSFDQQSRFQETNMKLTDGYSRPKFNIAGAMEWLCFRLDMLSSITFAFSLIFLISI 1731
Query: 899 PNGIIHP-----------------------YKNLERKIISVERILQCACIPSEPALVIEA 935
P G I P N+E KIISVERILQ CIP EP+LV++
Sbjct: 1732 PQGFIDPGLAGLAVTYGLNLNMVQAWMIWNLCNMENKIISVERILQYTCIPCEPSLVVDD 1791
Query: 936 TKPNNSRPSHGEVNIRHLQVRYAPNLPLVLR---------------GRTGSGKSTLIQTL 980
+P+ S PS+GEV+I+ L+VRYAP+LPLVLR GRTGSGKSTLIQTL
Sbjct: 1792 NRPDPSWPSYGEVDIQDLKVRYAPHLPLVLRGLTCKFRGGLKTGIVGRTGSGKSTLIQTL 1851
Query: 981 FRIVESTAGHILIDGKDISLIGLHDLRTRLSIIPQDPTMFEGTTRSNLDPLEEHADEQIW 1040
FRIVE TAG ++ID +IS IGLHDLR+RLSIIPQDPTMFEGT R+NLDPLEE+ DEQIW
Sbjct: 1852 FRIVEPTAGQVMIDNINISSIGLHDLRSRLSIIPQDPTMFEGTVRNNLDPLEEYTDEQIW 1911
Query: 1041 EALDKCQLGDEVRKKKGKLDSQ------------------GRVLLKKSKVLVLDEATASV 1082
EALDKCQLGDEVRKK+GKLDS+ GRVLLKKSKVLVLDEATASV
Sbjct: 1912 EALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKKSKVLVLDEATASV 1971
Query: 1083 DTATDNQIQQTLRQHFSDCTVVTIAHRITSVLDSAMVLLLNHGLIKEYDSPTKLLENKSS 1142
DTATDN IQQTLRQHFSD TV+TIAHRITSVLDS MVLLL+ GLI+EYD+PT+LLENKSS
Sbjct: 1972 DTATDNLIQQTLRQHFSDSTVITIAHRITSVLDSDMVLLLSQGLIEEYDTPTRLLENKSS 2031
Query: 1143 SFAQLVAEYTSSSS 1156
SFAQLVAEYT S+
Sbjct: 2032 SFAQLVAEYTMRSN 2045
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|359494289|ref|XP_003634753.1| PREDICTED: ABC transporter C family member 3-like [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 1670 bits (4326), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 858/1273 (67%), Positives = 977/1273 (76%), Gaps = 123/1273 (9%)
Query: 2 VTPYSNAGLFSIRSFSWMGSLIALGNKRTLDLEDVPRLDCSDSIYGVSPVLQNKLEAVVG 61
VTP+S AG FS+ +FSW+G LIA GNK+TLDL DVP+LD S+S+ V P +NKL+ G
Sbjct: 212 VTPFSKAGFFSLLTFSWIGPLIAEGNKKTLDLGDVPQLDTSNSVVAVFPAFRNKLQCDCG 271
Query: 62 VANRLTALRLAKVLFFSAWQEILFIAILALLYTLATYVGPYLIDNFVQYLNGRQAFEYEG 121
+N +T L+L K L F+ W EIL A+ LL LA+YVGPYLID FVQYLNGR+ F+ EG
Sbjct: 272 GSNGVTTLKLVKALIFAFWAEILLTALFLLLDILASYVGPYLIDTFVQYLNGRREFKNEG 331
Query: 122 YVL-----------CLSERHWFFQVQQFGIRFRATLFAMIYNKGLTLSGQAKQGNTSGEI 170
YVL CLS R F++QQ G R RA + MIYNKGLTLS Q+KQG+T+GEI
Sbjct: 332 YVLVMVFFLAKLVECLSLRQCSFRLQQVGFRIRAVMITMIYNKGLTLSCQSKQGHTTGEI 391
Query: 171 INLIAVDAER--------------------ALLILYKKLGLASIATLLATAIVMLANFPL 210
IN ++VDAER ALLILYK +GLAS+A AT IVMLAN PL
Sbjct: 392 INFMSVDAERIGDFIWYMHGPWMVIVQVTLALLILYKNVGLASVAAFFATIIVMLANVPL 451
Query: 211 GRLREKFQDKFMETKDRRIKATSEILRNMRILKLQGWELK---------KNETAWLKKSV 261
G+ EKFQ K ME+KD+R+KATSEILRNMRILKLQGWE+K KNET WLKK +
Sbjct: 452 GKWEEKFQGKLMESKDKRMKATSEILRNMRILKLQGWEMKFLSKIVDLRKNETGWLKKYL 511
Query: 262 YTEAMISFFCWGAPTFVSVVTFGSCILLGIPLESGMILSALTTFKILQEPIYYLPESISM 321
YT AM +FF W APTFVSVVTFG+C+L+GIPLESG ILS+L TF+ILQ+PIY LP+ ISM
Sbjct: 512 YTSAMTTFFFWVAPTFVSVVTFGTCMLIGIPLESGKILSSLATFRILQQPIYLLPDLISM 571
Query: 322 MIQAKVPLDRIASFLCLEGLQTDVLEKMPRGNSDTAIEIIDGSFSWDFSSPNPTLRNINL 381
++Q KV LDRI SFL L LQ+DV+E++P+G+SDTAIEI+DG+FSWD SSPNPTL++INL
Sbjct: 572 IVQTKVSLDRITSFLRLVDLQSDVIERLPKGSSDTAIEIVDGNFSWDLSSPNPTLKDINL 631
Query: 382 KVFHGMRVAVCGTVGSGKSSCLSCILGGVPKESGIIRLCGTKAYVAQSPWIQSGKIEENI 441
+V GMRVAVCGTVGSGKSS LSC+LG VPK SGI++LCGTKAYVAQSPWIQSGKIEENI
Sbjct: 632 RVCRGMRVAVCGTVGSGKSSLLSCMLGEVPKISGILKLCGTKAYVAQSPWIQSGKIEENI 691
Query: 442 LFGKEMDRERYERVLEACSLKKDLEVLPFGDQTIIGERGINLSGGQKQRIQIARPLYQDA 501
LFGKEMDRERYERVL+ACSLKKDLEVL FGDQT+IGERGINLSGGQKQRIQIAR LYQ+A
Sbjct: 692 LFGKEMDRERYERVLDACSLKKDLEVLSFGDQTVIGERGINLSGGQKQRIQIARALYQNA 751
Query: 502 DIFLLDDPFSPVDDHTGAHLFKFCWVS--SSKTVIYATHQVEFLPAADLILVIKDGKITQ 559
DI+L DDPFS VD HTG HLFK C + SKTVIY THQVEFLPAADLILV+KDG+ITQ
Sbjct: 752 DIYLFDDPFSAVDAHTGTHLFKECLLGLLGSKTVIYVTHQVEFLPAADLILVMKDGRITQ 811
Query: 560 AGKYSDILNSGTDFMELVGAHKQALSGLDSIDRGPVSERKSINKENDGTSTTNEIVNKEE 619
AGKY++ILNSGTDFMELVGAHK+ALS L+S++ G +SE+ SI++++D T+E+V KEE
Sbjct: 812 AGKYNEILNSGTDFMELVGAHKKALSALNSVETGSLSEKLSIHEDSDNIGGTSEVVEKEE 871
Query: 620 NKNFQSD--DEAALPKGQLVQEEEREKGKVGFSVYWKYMTTAYGGVLVPFILLAQIIFQI 677
N Q+ +E PKGQLVQEEEREKGKVG VYW YM TAYGG LVPFILL+QI+FQ+
Sbjct: 872 NSGGQNGKAEEIDGPKGQLVQEEEREKGKVGLWVYWNYMRTAYGGALVPFILLSQILFQL 931
Query: 678 FQIGSNYWMAWATPVAKDVNPAVGASTLIIVYVG------------------AGYKTATQ 719
QIGSNYWMAWA+PV+ DV PAV STLIIVYV AGYKTAT
Sbjct: 932 LQIGSNYWMAWASPVSDDVKPAVRGSTLIIVYVALAVGSSFCVLSRAMLLVTAGYKTATI 991
Query: 720 LFNKMHVCIFRAPMYFFDSTPSGRILNRVSENVKWADQSAADMDIPYDIGAFAFSMIQLL 779
LFNKMH+C+FRAPM FFD+TPSGRILNR S DQS D +I +GA AF +IQLL
Sbjct: 992 LFNKMHLCVFRAPMSFFDATPSGRILNRAS-----TDQSTIDTNIATQVGACAFQLIQLL 1046
Query: 780 GIIVVMSLVAWQVLIVFVPVIATFIWYQQYYITSTRELSRLIGVCKAPVIQQFSETISGS 839
GII VMS VAWQV IVF+PV AT IWYQQYYI S RELSRL GVCKAP+IQ FSETISGS
Sbjct: 1047 GIIAVMSQVAWQVFIVFIPVAATCIWYQQYYIPSARELSRLAGVCKAPIIQHFSETISGS 1106
Query: 840 TTIRSLDQELRFRDTNMKLIDEYSRPKFHIAGAMEWLRFCIDMLSSITFAFSLAFLISVP 899
TIRS DQE RFRDTNMKLID Y RPKF IAGA+EWL F +DMLSS+TFAFSL FLISVP
Sbjct: 1107 MTIRSFDQESRFRDTNMKLIDGYIRPKFSIAGAIEWLCFRLDMLSSVTFAFSLVFLISVP 1166
Query: 900 NGIIHP-----------------------YKNLERKIISVERILQCACIPSEPALVIEAT 936
G+I P + N+E IISVERILQ IPSEP LVIE
Sbjct: 1167 EGVIDPGLAGLTVTYGLNLNMILAWVIWNFCNMENIIISVERILQYTSIPSEPPLVIEEN 1226
Query: 937 KPNNSRPSHGEVNIRHLQVRYAPNLPLVLR---------------GRTGSGKSTLIQTLF 981
+P S PSHG+V+I+ LQVRYAP++PLVLR GRTGSGKSTLIQTLF
Sbjct: 1227 RPACSWPSHGQVDIQDLQVRYAPHMPLVLRGLTCTFLGGMKTGIVGRTGSGKSTLIQTLF 1286
Query: 982 RIVESTAGHILIDGKDISLIGLHDLRTRLSIIPQDPTMFEGTTRSNLDPLEEHADEQIWE 1041
RIVE AG I IDG +IS IGLHDLR+RLSIIPQDPTMFEGT RSNLDPLEE++DEQIWE
Sbjct: 1287 RIVEPAAGQITIDGTNISSIGLHDLRSRLSIIPQDPTMFEGTVRSNLDPLEEYSDEQIWE 1346
Query: 1042 ALDKCQLGDEVRKKKGKLDSQ------------------GRVLLKKSKVLVLDEATASVD 1083
ALDKCQLGDEVRKK+GKLDS GRVLLKKSKVLVLDEATASVD
Sbjct: 1347 ALDKCQLGDEVRKKEGKLDSAVTENGENWSMGQRQLVCLGRVLLKKSKVLVLDEATASVD 1406
Query: 1084 TATDNQIQQTLRQHFSDCTVVTIAHRITSVLDSAMVLLLNHGLIKEYDSPTKLLENKSSS 1143
TATDN IQQTLRQHF D TV+TIAHRITSVLDS MVLLL+HGL++EYD+PT+LLENKSSS
Sbjct: 1407 TATDNLIQQTLRQHFVDSTVITIAHRITSVLDSDMVLLLDHGLVEEYDTPTRLLENKSSS 1466
Query: 1144 FAQLVAEYTSSSS 1156
FA+LVAEYT S+
Sbjct: 1467 FAKLVAEYTVRSN 1479
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356501620|ref|XP_003519622.1| PREDICTED: ABC transporter C family member 3-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 1668 bits (4320), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 847/1273 (66%), Positives = 978/1273 (76%), Gaps = 123/1273 (9%)
Query: 2 VTPYSNAGLFSIRSFSWMGSLIALGNKRTLDLEDVPRLDCSDSIYGVSPVLQNKLEAVVG 61
VTP+SNAG+ SI +FSW+G LIA+GNK+TLDLEDVP+LD DS+ G P + K+EA G
Sbjct: 217 VTPFSNAGILSILTFSWVGPLIAVGNKKTLDLEDVPQLDSRDSVIGAFPTFREKVEADCG 276
Query: 62 VANRLTALRLAKVLFFSAWQEILFIAILALLYTLATYVGPYLIDNFVQYLNGRQAFEYEG 121
N +T L+L K L SAW+EIL A L LL TLA+YVGPYLID FVQYL G++ +E +G
Sbjct: 277 GINSVTTLKLVKSLIISAWKEILITAFLVLLKTLASYVGPYLIDGFVQYLGGQRLYENQG 336
Query: 122 YVL-----------CLSERHWFFQVQQFGIRFRATLFAMIYNKGLTLSGQAKQGNTSGEI 170
Y L CL+ RHWFF++QQ G+R RA L MIYNK LTLS Q+KQG+TSGEI
Sbjct: 337 YFLVSAFFFAKLVECLTRRHWFFRLQQVGLRIRALLVTMIYNKALTLSCQSKQGHTSGEI 396
Query: 171 INLIAVDAER--------------------ALLILYKKLGLASIATLLATAIVMLANFPL 210
IN + VDAER ALLILYK LGLASIA +AT I+MLAN PL
Sbjct: 397 INFMTVDAERVGVFSWYMHDLWMVVLQVTLALLILYKNLGLASIAAFVATVIIMLANVPL 456
Query: 211 GRLREKFQDKFMETKDRRIKATSEILRNMRILKLQGWELK---------KNETAWLKKSV 261
G L+EKFQ K ME+KD R+KATSEILRNMRILKLQGWE+K KNE WLKK V
Sbjct: 457 GSLQEKFQKKLMESKDTRMKATSEILRNMRILKLQGWEMKFLLKITELRKNEQGWLKKYV 516
Query: 262 YTEAMISFFCWGAPTFVSVVTFGSCILLGIPLESGMILSALTTFKILQEPIYYLPESISM 321
YT A+ +F WG+PTFVSVVTFG+C+L+GIPLESG ILSAL TF+ LQEPIY LP++ISM
Sbjct: 517 YTAALTTFVFWGSPTFVSVVTFGTCMLIGIPLESGKILSALATFRTLQEPIYNLPDTISM 576
Query: 322 MIQAKVPLDRIASFLCLEGLQTDVLEKMPRGNSDTAIEIIDGSFSWDFSSPNPTLRNINL 381
+ Q KV LDRI SFL L+ L++DV+EK+P G+SDTAIE++DG+FSWD SSP+PTL+NINL
Sbjct: 577 IAQTKVSLDRIVSFLRLDDLRSDVVEKLPWGSSDTAIEVVDGNFSWDLSSPSPTLQNINL 636
Query: 382 KVFHGMRVAVCGTVGSGKSSCLSCILGGVPKESGIIRLCGTKAYVAQSPWIQSGKIEENI 441
KVFHGMRVAVCGTVGSGKS+ LSC+LG VPK SGI+++CGTKAYVAQS WIQSGKIE+NI
Sbjct: 637 KVFHGMRVAVCGTVGSGKSTLLSCVLGEVPKISGILKVCGTKAYVAQSSWIQSGKIEDNI 696
Query: 442 LFGKEMDRERYERVLEACSLKKDLEVLPFGDQTIIGERGINLSGGQKQRIQIARPLYQDA 501
LFG+ MDRERYE+VLEACSLKKDLE+L FGDQTIIGERGINLSGGQKQRIQIAR LYQDA
Sbjct: 697 LFGECMDRERYEKVLEACSLKKDLEILSFGDQTIIGERGINLSGGQKQRIQIARALYQDA 756
Query: 502 DIFLLDDPFSPVDDHTGAHLFKFCWVS--SSKTVIYATHQVEFLPAADLILVIKDGKITQ 559
DI+L DDPFS VD HTG+HLFK C + SKTV+Y THQVEFLPAADLILV+KDGKITQ
Sbjct: 757 DIYLFDDPFSAVDAHTGSHLFKECLLGLLCSKTVVYVTHQVEFLPAADLILVMKDGKITQ 816
Query: 560 AGKYSDILNSGTDFMELVGAHKQALSGLDSIDRGPVSERKSINKENDGTSTTNEIVNKEE 619
GKY+D+LNSG DFMELVGAHK+ALS LDS+D VS S+ +++ S + K++
Sbjct: 817 CGKYTDLLNSGADFMELVGAHKKALSTLDSLDGAAVSNEISVLEQDVNLSGAHGFKEKKD 876
Query: 620 NKNFQS--DDEAALPKGQLVQEEEREKGKVGFSVYWKYMTTAYGGVLVPFILLAQIIFQI 677
+K+ Q+ D+ + P+GQLVQEEEREKGKVGFSVYWK +TTAYGG LVPFILLAQI+FQ
Sbjct: 877 SKDEQNGKTDDKSEPQGQLVQEEEREKGKVGFSVYWKCITTAYGGALVPFILLAQILFQA 936
Query: 678 FQIGSNYWMAWATPVAKDVNPAVGASTLIIVYVG------------------AGYKTATQ 719
QIGSNYWM WATP+++DV P V +TLI VYVG AGYKTAT
Sbjct: 937 LQIGSNYWMVWATPISEDVQPPVEGTTLIAVYVGLAIGSSFCILARAILLVTAGYKTATI 996
Query: 720 LFNKMHVCIFRAPMYFFDSTPSGRILNRVSENVKWADQSAADMDIPYDIGAFAFSMIQLL 779
LFNKMH CIFRAPM FFDSTPSGRILNR S DQSA D DIPY I +FAF +IQLL
Sbjct: 997 LFNKMHFCIFRAPMSFFDSTPSGRILNRAS-----TDQSALDTDIPYQIASFAFILIQLL 1051
Query: 780 GIIVVMSLVAWQVLIVFVPVIATFIWYQQYYITSTRELSRLIGVCKAPVIQQFSETISGS 839
GII VMS AWQV +VF+PVIA + YQQYYI S RELSRL+GVCKAP+IQ F+ETISG+
Sbjct: 1052 GIIAVMSQAAWQVFVVFIPVIAISVLYQQYYIPSARELSRLVGVCKAPIIQHFAETISGT 1111
Query: 840 TTIRSLDQELRFRDTNMKLIDEYSRPKFHIAGAMEWLRFCIDMLSSITFAFSLAFLISVP 899
TTIRS DQ+ RF++TNMKL D YSRP F+IAGA+EWL F +DMLSSITFAFSL FLIS+P
Sbjct: 1112 TTIRSFDQQSRFQETNMKLTDGYSRPMFNIAGAVEWLCFRLDMLSSITFAFSLIFLISIP 1171
Query: 900 NGIIHP-----------------------YKNLERKIISVERILQCACIPSEPALVIEAT 936
G I P N+E KIISVERILQ CIP EP+LV++
Sbjct: 1172 QGFIDPGLAGLAVTYGLNLNIVQGWMIWNLCNMENKIISVERILQYTCIPCEPSLVVDDN 1231
Query: 937 KPNNSRPSHGEVNIRHLQVRYAPNLPLVLR---------------GRTGSGKSTLIQTLF 981
+P+ S PS+GEV+I+ L+VRYAP+LPLVLR GRTGSGKSTLIQTLF
Sbjct: 1232 RPDPSWPSYGEVDIQDLKVRYAPHLPLVLRGLTCKFRGGLKTGIVGRTGSGKSTLIQTLF 1291
Query: 982 RIVESTAGHILIDGKDISLIGLHDLRTRLSIIPQDPTMFEGTTRSNLDPLEEHADEQIWE 1041
RIVE TAG ++ID +IS IGLHDLR+RLSIIPQDPTMFEGT R+NLDPLEE+ DE+IWE
Sbjct: 1292 RIVEPTAGQVMIDSINISSIGLHDLRSRLSIIPQDPTMFEGTVRNNLDPLEEYTDEEIWE 1351
Query: 1042 ALDKCQLGDEVRKKKGKLDSQ------------------GRVLLKKSKVLVLDEATASVD 1083
ALDKCQLGDEVRKK+GKLDS+ GRVLLKKSKVLVLDEATASVD
Sbjct: 1352 ALDKCQLGDEVRKKEGKLDSKVTENGENWSMGQRQLVCLGRVLLKKSKVLVLDEATASVD 1411
Query: 1084 TATDNQIQQTLRQHFSDCTVVTIAHRITSVLDSAMVLLLNHGLIKEYDSPTKLLENKSSS 1143
TATDN IQQTLRQHFSD TV+TIAHRITSVLDS MVLLL+ GLI+EYD+PT+LLENKSSS
Sbjct: 1412 TATDNLIQQTLRQHFSDSTVITIAHRITSVLDSDMVLLLSQGLIEEYDTPTRLLENKSSS 1471
Query: 1144 FAQLVAEYTSSSS 1156
FAQLVAEYT S+
Sbjct: 1472 FAQLVAEYTMRSN 1484
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|357494883|ref|XP_003617730.1| Multidrug resistance protein ABC transporter family [Medicago truncatula] gi|355519065|gb|AET00689.1| Multidrug resistance protein ABC transporter family [Medicago truncatula] | Back alignment and taxonomy information |
|---|
Score = 1638 bits (4242), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 842/1298 (64%), Positives = 979/1298 (75%), Gaps = 156/1298 (12%)
Query: 2 VTPYSNAGLFSIRSFSWMGSLIALGNKRTLDLEDVPRLDCSDSIYGVSPVLQNKLEAVVG 61
VTP+S AG+ S+ +F+W+G LIA G K+ LDLEDVP+LD DS+ G P+ + KLEA G
Sbjct: 234 VTPFSTAGILSLLTFTWVGPLIAFGYKKNLDLEDVPQLDSGDSVVGAFPIFREKLEADCG 293
Query: 62 VANRLTALRLAKVLFFSAWQEILFIAILALLYTLATYVGPYLIDNFVQYLNGRQAFEYEG 121
NR+T L+L K L S W+EILF A LALL T A+YVGPYLID+FVQYL+G++ +E +G
Sbjct: 294 AVNRVTTLKLVKSLIISGWKEILFTAFLALLNTFASYVGPYLIDSFVQYLDGKRLYENQG 353
Query: 122 YVL-----------CLSERHWFFQVQQFGIRFRATLFAMIYNKGLTLSGQAKQGNTSGEI 170
YVL CL++RHWFF++QQ G+R RA L MIY+K LTLSGQ++Q +TSGEI
Sbjct: 354 YVLVSAFFFAKLVECLTQRHWFFRLQQLGLRTRALLVTMIYSKALTLSGQSRQCHTSGEI 413
Query: 171 INLIAVDAER--------------------ALLILYKKLGLASIATLLATAIVMLANFPL 210
IN + VDAER ALLILYK LGLASIA +AT IVMLAN PL
Sbjct: 414 INFMTVDAERVGSFSWYMHDLWLVALQVTLALLILYKNLGLASIAAFVATIIVMLANVPL 473
Query: 211 GRLREKFQDKFMETKDRRIKATSEILRNMRILKLQGWELK---------KNETAWLKKSV 261
G L+EKFQ+K ME+KD R+K TSEILRNMRILKLQGWE+K E WLKK +
Sbjct: 474 GSLQEKFQNKLMESKDTRMKTTSEILRNMRILKLQGWEMKFLSKITALRDAEQGWLKKFL 533
Query: 262 YTEAMISFFCWGAPTFVSVVTFGSCILLGIPLESGMILSALTTFKILQEPIYYLPESISM 321
YT A+ +F WGAPTFVSVVTFG+C+L+GIPLESG ILSAL TF+ILQEPIY LP+ ISM
Sbjct: 534 YTNAVTTFVFWGAPTFVSVVTFGTCMLIGIPLESGKILSALATFRILQEPIYNLPDVISM 593
Query: 322 MIQAKVPLDRIASFLCLEGLQTDVLEKMPRGNSDTAIEIIDGSFSWDFSSPNPTLRNINL 381
+ Q KV LDRIASFL L+ LQ+DV+EK+P G+SDTAIE++DG+FSW+ S P+PTL+NINL
Sbjct: 594 IAQTKVSLDRIASFLRLDDLQSDVVEKLPPGSSDTAIEVVDGNFSWELSLPSPTLQNINL 653
Query: 382 KVFHGMRVAVCGTVGSGKSSCLSCILGGVPKESGIIRLCGTKAYVAQSPWIQSGKIEENI 441
KV HGM+VAVCGTVGSGKS+ LSC+LG VPK SG++++CGTKAYVAQSPWIQSGKIE+NI
Sbjct: 654 KVSHGMKVAVCGTVGSGKSTLLSCVLGEVPKISGVLKVCGTKAYVAQSPWIQSGKIEDNI 713
Query: 442 LFGKEMDRERYERVLEACSLKKDLEVLPFGDQTIIGERGINLSGGQKQRIQIARPLYQDA 501
LFG+ M RERYE+VLEACSLKKDLE+L FGDQT+IGERGINLSGGQKQRIQIAR LYQDA
Sbjct: 714 LFGENMVRERYEKVLEACSLKKDLEILSFGDQTVIGERGINLSGGQKQRIQIARALYQDA 773
Query: 502 DIFLLDDPFSPVDDHTGAHLFKF--------------------------CW--VSSSKTV 533
DI+L DDPFS VD HTG+HLFK C V SSKTV
Sbjct: 774 DIYLFDDPFSAVDAHTGSHLFKLSGSYMHKSYISNRYLIELNRYKSLCECLLGVLSSKTV 833
Query: 534 IYATHQVEFLPAADLILVIKDGKITQAGKYSDILNSGTDFMELVGAHKQALSGLDSIDRG 593
+Y THQVEFLP ADLILV+KDGK+TQ+GKY+D+LN GTDFMELVGAH++ALS L+S+D G
Sbjct: 834 VYVTHQVEFLPTADLILVMKDGKVTQSGKYADLLNIGTDFMELVGAHREALSTLESLDGG 893
Query: 594 PVSERKSINKENDGTSTTNEIVNKEENKNFQSDDEAALPKGQLVQEEEREKGKVGFSVYW 653
K+ N+ + E NK+E +N ++DD+ P+GQLVQEEEREKGKVGFSVYW
Sbjct: 894 -----KACNEISTSEQEVKE-ANKDE-QNGKADDKGE-PQGQLVQEEEREKGKVGFSVYW 945
Query: 654 KYMTTAYGGVLVPFILLAQIIFQIFQIGSNYWMAWATPVAKDVNPAVGASTLIIVYVG-- 711
KY+TTAYGG LVPFIL AQI+FQ QIGSNYWMAWATP++ +V P V +TLI VYVG
Sbjct: 946 KYITTAYGGSLVPFILFAQILFQALQIGSNYWMAWATPISAEVEPPVEGTTLIEVYVGFA 1005
Query: 712 ----------------AGYKTATQLFNKMHVCIFRAPMYFFDSTPSGRILNRVSENVKWA 755
GYKTAT LFNKMH+CIFRAPM FFDSTPSGRILNR S
Sbjct: 1006 IGSSLCILVRALLLVTVGYKTATILFNKMHLCIFRAPMSFFDSTPSGRILNRAS-----T 1060
Query: 756 DQSAADMDIPYDIGAFAFSMIQLLGIIVVMSLVAWQVLIVFVPVIATFIWYQQYYITSTR 815
DQSA D DIPY IG+FAFS+IQLLGII VMS VAWQV IVF+PVIA IWYQ+YY+ S R
Sbjct: 1061 DQSAVDTDIPYQIGSFAFSIIQLLGIIAVMSQVAWQVFIVFIPVIAVSIWYQRYYLPSAR 1120
Query: 816 ELSRLIGVCKAPVIQQFSETISGSTTIRSLDQELRFRDTNMKLIDEYSRPKFHIAGAMEW 875
ELSRL GVCKAP+IQ F+ETISG++TIRS DQ+ RF +TNMKL D YSRPKF+IA AMEW
Sbjct: 1121 ELSRLGGVCKAPIIQHFAETISGTSTIRSFDQQSRFHETNMKLTDGYSRPKFNIAAAMEW 1180
Query: 876 LRFCIDMLSSITFAFSLAFLISVPNGIIHP-----------------------YKNLERK 912
L F +DMLSSITFAFSL FLIS+P GII+P NLE K
Sbjct: 1181 LCFRLDMLSSITFAFSLIFLISIPPGIINPGLAGLAVTYGLNLNMIQAWVIWNLCNLENK 1240
Query: 913 IISVERILQCACIPSEPALVI-EATKPNNSRPSHGEVNIRHLQVRYAPNLPLVLR----- 966
IISVERILQ IPSEP LV+ E +P++S P++GEV+I++LQVRYAP+LPLVLR
Sbjct: 1241 IISVERILQYTTIPSEPPLVLEEENRPDSSWPAYGEVDIQNLQVRYAPHLPLVLRGLTCT 1300
Query: 967 ----------GRTGSGKSTLIQTLFRIVESTAGHILIDGKDISLIGLHDLRTRLSIIPQD 1016
GRTGSGKSTLIQTLFR+VE TAG ++ID +IS IGLHDLR+RLSIIPQD
Sbjct: 1301 FNGGLKTGIVGRTGSGKSTLIQTLFRLVEPTAGEVIIDRINISTIGLHDLRSRLSIIPQD 1360
Query: 1017 PTMFEGTTRSNLDPLEEHADEQIWEALDKCQLGDEVRKKKGKLDSQ-------------- 1062
PTMFEGT RSNLDPLEE+ DEQIWEALDKCQLGDEVRKK+GKLDS
Sbjct: 1361 PTMFEGTVRSNLDPLEEYTDEQIWEALDKCQLGDEVRKKEGKLDSSVSENGENWSMGQRQ 1420
Query: 1063 ----GRVLLKKSKVLVLDEATASVDTATDNQIQQTLRQHFSDCTVVTIAHRITSVLDSAM 1118
GRVLLKKSK+LVLDEATASVDTATDN IQQTLRQHF+D TV+TIAHRITSVLDS M
Sbjct: 1421 LVCLGRVLLKKSKILVLDEATASVDTATDNLIQQTLRQHFTDSTVITIAHRITSVLDSDM 1480
Query: 1119 VLLLNHGLIKEYDSPTKLLENKSSSFAQLVAEYTSSSS 1156
VLLL+ GLI+EYDSPT LLE+KSSSFA+LVAEYT S+
Sbjct: 1481 VLLLDQGLIEEYDSPTTLLEDKSSSFAKLVAEYTMRSN 1518
|
Source: Medicago truncatula Species: Medicago truncatula Genus: Medicago Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449465513|ref|XP_004150472.1| PREDICTED: ABC transporter C family member 3-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 1635 bits (4235), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 828/1272 (65%), Positives = 964/1272 (75%), Gaps = 124/1272 (9%)
Query: 2 VTPYSNAGLFSIRSFSWMGSLIALGNKRTLDLEDVPRLDCSDSIYGVSPVLQNKLEAVVG 61
VTPY AG+FSI SFSWMG LIA G K+ LDLED+P+L D++ G +L+NKLE+ G
Sbjct: 236 VTPYETAGIFSILSFSWMGPLIATGKKKALDLEDIPQLASRDAVSGTFQILRNKLESECG 295
Query: 62 VANRLTALRLAKVLFFSAWQEILFIAILALLYTLATYVGPYLIDNFVQYLNGRQAFEYEG 121
NR+T L LAK L ++AW+EIL A+ A +YTLATYVGPYLID FVQYLNG + FE EG
Sbjct: 296 TINRVTTLSLAKCLLYTAWKEILLTAVFAFIYTLATYVGPYLIDTFVQYLNGHRDFENEG 355
Query: 122 YVL-----------CLSERHWFFQVQQFGIRFRATLFAMIYNKGLTLSGQAKQGNTSGEI 170
YVL CL+ RHWFF+VQQ GIR RA L AMIYNKGLTLS Q++Q +TSGEI
Sbjct: 356 YVLACVFFLAKLVECLAMRHWFFRVQQVGIRVRAALVAMIYNKGLTLSCQSRQQHTSGEI 415
Query: 171 INLIAVDAER--------------------ALLILYKKLGLASIATLLATAIVMLANFPL 210
IN + VDAER ALL+LYK LGLASI+ +AT +ML N PL
Sbjct: 416 INFMTVDAERVGDFSWYMHDVWLVVFQVGLALLVLYKNLGLASISAFVATIAIMLINIPL 475
Query: 211 GRLREKFQDKFMETKDRRIKATSEILRNMRILKLQGWELK--------KN-ETAWLKKSV 261
G+L+EKFQDK ME+KD R+KATSEILRNMRILKLQGWE+K +N E WLKK +
Sbjct: 476 GKLQEKFQDKIMESKDTRMKATSEILRNMRILKLQGWEMKFLSKISELRNIEAGWLKKFL 535
Query: 262 YTEAMISFFCWGAPTFVSVVTFGSCILLGIPLESGMILSALTTFKILQEPIYYLPESISM 321
YT ++ +F WGAPTFVSV+TFG+C+L+GIPLESG +LSAL TF+ILQEPIY LP++ISM
Sbjct: 536 YTLSVTTFVFWGAPTFVSVITFGTCMLVGIPLESGKVLSALATFRILQEPIYNLPDTISM 595
Query: 322 MIQAKVPLDRIASFLCLEGLQTDVLEKMPRGNSDTAIEIIDGSFSWDFSSPNPTLRNINL 381
++Q KV LDRI +FL L+ LQ D++E++PRG+S TA+EI++G+FSWD SS N TLR+IN
Sbjct: 596 VVQTKVSLDRIVAFLRLDDLQADIIERVPRGSSTTAVEIVNGNFSWDSSSSNLTLRDINF 655
Query: 382 KVFHGMRVAVCGTVGSGKSSCLSCILGGVPKESGIIRLCGTKAYVAQSPWIQSGKIEENI 441
KV HGMRVAVCGTVGSGKSS LSCILG VPK SG +R+CG+KAYVAQSPWIQSGKIE+NI
Sbjct: 656 KVEHGMRVAVCGTVGSGKSSLLSCILGEVPKTSGNLRVCGSKAYVAQSPWIQSGKIEDNI 715
Query: 442 LFGKEMDRERYERVLEACSLKKDLEVLPFGDQTIIGERGINLSGGQKQRIQIARPLYQDA 501
LF KEMDRERY+RVLEAC L+KDLE+L FGDQT+IGERGINLSGGQKQRIQIAR LYQD
Sbjct: 716 LFSKEMDRERYKRVLEACCLEKDLEILSFGDQTVIGERGINLSGGQKQRIQIARALYQDV 775
Query: 502 DIFLLDDPFSPVDDHTGAHLFKFCW--VSSSKTVIYATHQVEFLPAADLILVIKDGKITQ 559
DI+L DDPFS VD HTG+HLFK C V SSKTVIY THQVEFLPAADLILV+KDG+ITQ
Sbjct: 776 DIYLFDDPFSAVDAHTGSHLFKECLLGVLSSKTVIYVTHQVEFLPAADLILVMKDGRITQ 835
Query: 560 AGKYSDILNSGTDFMELVGAHKQALSGLDSIDRGPVSERKSINKENDGTSTTNEIVNKEE 619
AGKY +IL SGTDFM LVGAH++ALS ++S G S + S +KE++ +TN I ++++
Sbjct: 836 AGKYEEILRSGTDFMALVGAHEEALSAINSSVEGD-SSKNSTSKEDESVISTNGITHEDD 894
Query: 620 NKNFQSDD--EAALPKGQLVQEEEREKGKVGFSVYWKYMTTAYGGVLVPFILLAQIIFQI 677
+ Q +A+ KGQLVQEEEREKGKVGF VYWKY+ +AYGG LVP IL Q++FQI
Sbjct: 895 KSDIQDGRAVDASKSKGQLVQEEEREKGKVGFPVYWKYIKSAYGGALVPIILFGQVLFQI 954
Query: 678 FQIGSNYWMAWATPVAKDVNPAVGASTLIIVYVG------------------AGYKTATQ 719
QIGSNYWMAWATPV++D+ P V S LIIVYV AG+K AT+
Sbjct: 955 LQIGSNYWMAWATPVSEDMEPPVSTSRLIIVYVALSVGSSLCVLLRSALLVTAGFKAATE 1014
Query: 720 LFNKMHVCIFRAPMYFFDSTPSGRILNRVSENVKWADQSAADMDIPYDIGAFAFSMIQLL 779
LF KMH IFRAPM FFD+TPSGRILNR S DQS DMDIP+ + +F F++IQL+
Sbjct: 1015 LFVKMHTSIFRAPMSFFDATPSGRILNRAS-----TDQSTLDMDIPFRVASFCFNVIQLV 1069
Query: 780 GIIVVMSLVAWQVLIVFVPVIATFIWYQQYYITSTRELSRLIGVCKAPVIQQFSETISGS 839
GII VMS VAWQV I+F+PV+A IWY+Q+YI S RELSRLIGVCKAPVIQ FSETISGS
Sbjct: 1070 GIIAVMSQVAWQVFIIFIPVMAVCIWYEQHYIPSARELSRLIGVCKAPVIQLFSETISGS 1129
Query: 840 TTIRSLDQELRFRDTNMKLIDEYSRPKFHIAGAMEWLRFCIDMLSSITFAFSLAFLISVP 899
TTIRS DQE RF+DTNMKL D YSRPKFH A AMEWL F +D+LSSITFA SL FLIS+P
Sbjct: 1130 TTIRSFDQESRFQDTNMKLTDAYSRPKFHTAAAMEWLCFRLDLLSSITFASSLIFLISIP 1189
Query: 900 NGIIHP-----------------------YKNLERKIISVERILQCACIPSEPALVIEAT 936
G+I P N+E KIISVERI Q IPSEP LVIE
Sbjct: 1190 VGVIDPGIAGLSVTYGLNLNMLQAWLIWNLCNMENKIISVERIFQYTSIPSEPPLVIEEN 1249
Query: 937 KPNNSRPSHGEVNIRHLQVRYAPNLPLVLR---------------GRTGSGKSTLIQTLF 981
+P+ S P+ GE+ + +LQVRYAP LPLVLR GRTGSGKSTLIQTLF
Sbjct: 1250 RPDRSWPAFGEIELHNLQVRYAPQLPLVLRGVTCTFPGGKKTGIVGRTGSGKSTLIQTLF 1309
Query: 982 RIVESTAGHILIDGKDISLIGLHDLRTRLSIIPQDPTMFEGTTRSNLDPLEEHADEQIWE 1041
RIV+ AGHI+ID +I+ IGLHDLR++LSIIPQDPTMFEGT RSNLDPLEE+ADE IWE
Sbjct: 1310 RIVDPVAGHIVIDNINITTIGLHDLRSKLSIIPQDPTMFEGTVRSNLDPLEEYADEDIWE 1369
Query: 1042 ALDKCQLGDEVRKKKGKLDSQ------------------GRVLLKKSKVLVLDEATASVD 1083
ALDKCQLGDEVRKK+GKLDS GRVLLKKSKVLVLDEATASVD
Sbjct: 1370 ALDKCQLGDEVRKKEGKLDSTVSENGENWSMGQRQLVCLGRVLLKKSKVLVLDEATASVD 1429
Query: 1084 TATDNQIQQTLRQHFSDCTVVTIAHRITSVLDSAMVLLLNHGLIKEYDSPTKLLENKSSS 1143
TATDN IQQTLRQHFSDCTV+TIAHRITSVL S MVLLL+HGLI+EYD+PT+LLE+K+SS
Sbjct: 1430 TATDNLIQQTLRQHFSDCTVITIAHRITSVLSSDMVLLLSHGLIEEYDTPTRLLEDKASS 1489
Query: 1144 FAQLVAEYTSSS 1155
F+QLVAEYT S
Sbjct: 1490 FSQLVAEYTQRS 1501
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST 
Original result of BLAST against Gene Ontology (AMIGO)
ID ![]() |
Alignment graph ![]() |
Length ![]() |
Definition ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 1156 | ||||||
| TAIR|locus:2090029 | 1514 | ABCC3 "ATP-binding cassette C3 | 0.634 | 0.484 | 0.597 | 0.0 | |
| TAIR|locus:2090049 | 1493 | ABCC7 "ATP-binding cassette C7 | 0.620 | 0.480 | 0.582 | 0.0 | |
| TAIR|locus:2090039 | 1466 | ABCC6 "ATP-binding cassette C6 | 0.621 | 0.489 | 0.580 | 0.0 | |
| TAIR|locus:2020235 | 1514 | ABCC5 "ATP-binding cassette C5 | 0.401 | 0.306 | 0.511 | 1.1e-260 | |
| TAIR|locus:2077750 | 1453 | ABCC10 "ATP-binding cassette C | 0.660 | 0.525 | 0.383 | 1.4e-211 | |
| TAIR|locus:2043268 | 1516 | ABCC4 "ATP-binding cassette C4 | 0.461 | 0.351 | 0.398 | 1.3e-181 | |
| TAIR|locus:2081755 | 1539 | ABCC14 "ATP-binding cassette C | 0.363 | 0.272 | 0.426 | 4.4e-174 | |
| UNIPROTKB|J9P084 | 1257 | LOC478384 "Uncharacterized pro | 0.570 | 0.524 | 0.335 | 6.1e-152 | |
| DICTYBASE|DDB_G0284867 | 1593 | abcC8 "ABC transporter C famil | 0.384 | 0.278 | 0.357 | 4e-151 | |
| UNIPROTKB|F1SK59 | 1298 | F1SK59 "Uncharacterized protei | 0.567 | 0.505 | 0.340 | 6.3e-149 |
| TAIR|locus:2090029 ABCC3 "ATP-binding cassette C3" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 2286 (809.8 bits), Expect = 0., Sum P(4) = 0.
Identities = 453/758 (59%), Positives = 560/758 (73%)
Query: 173 LIAVDAERALLILYKKXXXXXXXXXXXXXXVMLANFPLGRLREKFQDKFMETKDRRIKAT 232
++ + AL ILY+ VML NFP GR++E+FQ+K ME KD R+K+T
Sbjct: 446 MVLLQVGLALWILYRNLGLASIAALVATIIVMLINFPFGRMQERFQEKLMEAKDSRMKST 505
Query: 233 SEILRNMRILKLQGWELK---------KNETAWLKKSVYTEAMISFFCWGAPTFVSVVTF 283
SEILRNMRILKLQGWE+K K+E WLKK VY A+ISF WGAPT VSV TF
Sbjct: 506 SEILRNMRILKLQGWEMKFLSKIFDLRKSEEGWLKKYVYNSAVISFVFWGAPTLVSVSTF 565
Query: 284 GSCILLGIPLESGMILSALTTFKILQEPIYYLPESISMMIQAKVPLDRIASFLCLEGLQT 343
G+CILLGIPLESG ILSAL TF+ILQEPIY LP++ISM++Q KV LDR+AS+LCL+ LQ
Sbjct: 566 GACILLGIPLESGKILSALATFRILQEPIYNLPDTISMIVQTKVSLDRLASYLCLDNLQP 625
Query: 344 DVLEKMPRGNSDTAIEIIDGSFSWDFSSPNPTLRNINLKVFHGMRVAVCGTVGSGKSSCL 403
D++E++P+G+SD A+E+I+ + SWD SS NPTL++IN KVF GM+VAVCGTVGSGKSS L
Sbjct: 626 DIVERLPKGSSDVAVEVINSTLSWDVSSSNPTLKDINFKVFPGMKVAVCGTVGSGKSSLL 685
Query: 404 SCILGGVPKESGIIRLCGTKAYVAQSPWIQSGKIEENILFGKEMDRERYERVLEACSLKK 463
S +LG VPK SG +++CGTKAYVAQSPWIQSGKIE+NILFGK M+RERY++VLEACSL K
Sbjct: 686 SSLLGEVPKVSGSLKVCGTKAYVAQSPWIQSGKIEDNILFGKPMERERYDKVLEACSLSK 745
Query: 464 DLEVLPFGDQTIIGERGINLSGGQKQRIQIARPLYQDADIFLLDDPFSPVDDHTGAHLFK 523
DLE+L FGDQT+IGERGINLSGGQKQRIQIAR LYQDADI+L DDPFS VD HTG+HLFK
Sbjct: 746 DLEILSFGDQTVIGERGINLSGGQKQRIQIARALYQDADIYLFDDPFSAVDAHTGSHLFK 805
Query: 524 --FCWVSSSKTVIYATHQVEFLPAADLILVIKDGKITQAGKYSDILNSGTDFMELVGAHK 581
+ SK+VIY THQVEFLPAADLILV+KDG+I+QAGKY+DILNSGTDFMEL+GAH+
Sbjct: 806 EVLLGLLCSKSVIYVTHQVEFLPAADLILVMKDGRISQAGKYNDILNSGTDFMELIGAHQ 865
Query: 582 QALSGLDSIDRGPVSERKSINKENDGTSTTNEIVNKEENKNFQSDD-EAALPKGQLVQEE 640
+AL+ +DS+D VSE+ ++ +EN + K E+++ ++D E+ P+ Q++QEE
Sbjct: 866 EALAVVDSVDANSVSEKSALGQENVIVKDAIAVDEKLESQDLKNDKLESVEPQRQIIQEE 925
Query: 641 EREKGKVGFSVYWKYMTTAYGGVLVPXXXXXXXXXXXXXXGSNYWMAWATPVAKDVNPAV 700
EREKG V VYWKY+T AYGG LVP GSNYWMAWATPV++DV V
Sbjct: 926 EREKGSVALDVYWKYITLAYGGALVPFILLGQVLFQLLQIGSNYWMAWATPVSEDVQAPV 985
Query: 701 GASTLIIVYVGAGYKT-------ATQLFN---KMHVCIFRAPMYFFDSTPSGRILNRVSE 750
STL+IVYV + + AT L K +F + +P + S
Sbjct: 986 KLSTLMIVYVALAFGSSLCILLRATLLVTAGYKTATELFHKMHHCIFRSPMSFFDSTPSG 1045
Query: 751 NVKW---ADQSAADMDIPYDIGAFAFSMIQLLGIIVVMSLVAWQVLIVFVPVIATFIWYQ 807
+ DQSA D+++PY G+ A ++IQL+GII VMS V+W V +VF+PV+A IWYQ
Sbjct: 1046 RIMSRASTDQSAVDLELPYQFGSVAITVIQLIGIIGVMSQVSWLVFLVFIPVVAASIWYQ 1105
Query: 808 QYYITSTRELSRLIGVCKAPVIQQFSETISGSTTIRSLDQELRFRDTNMKLIDEYSRPKF 867
+YYI + RELSRL+GVCKAP+IQ FSETISG+TTIRS QE RFR NM+L D YSRPKF
Sbjct: 1106 RYYIAAARELSRLVGVCKAPLIQHFSETISGATTIRSFSQEFRFRSDNMRLSDGYSRPKF 1165
Query: 868 HIAGAMEWLRFCIDMLSSITFAFSLAFLISVPNGIIHP 905
+ AGAMEWL F +DMLSS+TF FSL FL+S+P G+I P
Sbjct: 1166 YTAGAMEWLCFRLDMLSSLTFVFSLVFLVSIPTGVIDP 1203
|
|
| TAIR|locus:2090049 ABCC7 "ATP-binding cassette C7" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 2177 (771.4 bits), Expect = 0., Sum P(4) = 0.
Identities = 444/762 (58%), Positives = 539/762 (70%)
Query: 173 LIAVDAERALLILYKKXXXXXXXXXXXXXXVMLANFPLGRLREKFQDKFMETKDRRIKAT 232
++ + ALLILY+ VML N PL +L EKFQ ME+KD R+K T
Sbjct: 430 ILVLQISLALLILYRSLGLGSIAAFAATFLVMLGNIPLAKLEEKFQGNLMESKDNRMKKT 489
Query: 233 SEILRNMRILKLQGWELK---KN------ETAWLKKSVYTEAMISFFCWGAPTFVSVVTF 283
SE L NMRILKLQGWE+K K E WLKK VY A IS W AP+FVS F
Sbjct: 490 SEALLNMRILKLQGWEMKFLHKILDLRGIEAGWLKKFVYNSAAISSVLWAAPSFVSATAF 549
Query: 284 GSCILLGIPLESGMILSALTTFKILQEPIYYLPESISMMIQAKVPLDRIASFLCLEGLQT 343
G+C+LL IPLESG I++AL TF+ILQ PIY LP++ISM++Q KV LDRIA+FLCL+ LQ
Sbjct: 550 GACMLLKIPLESGKIIAALATFRILQTPIYKLPDTISMIVQTKVSLDRIATFLCLDDLQQ 609
Query: 344 DVLEKMPRGNSDTAIEIIDGSFSWDFSSPNPTLRNINLKVFHGMRVAVCGTVGSGKSSCL 403
D +E++P G+S +E+ +G+FSWD SSP PTL++I K+ HGM +A+CGTVGSGKSS L
Sbjct: 610 DGMERLPSGSSKMDVEVSNGAFSWDDSSPIPTLKDIRFKIPHGMNIAICGTVGSGKSSLL 669
Query: 404 SCILGGVPKESGIIRLCGTKAYVAQSPWIQSGKIEENILFGKEMDRERYERVLEACSLKK 463
S ILG VPK SG +++CG KAY+AQSPWIQSGK+EENILFGK M RE Y+RVLEACSL K
Sbjct: 670 SSILGEVPKISGNLKVCGRKAYIAQSPWIQSGKVEENILFGKPMQREWYQRVLEACSLNK 729
Query: 464 DLEVLPFGDQTIIGERGINLSGGQKQRIQIARPLYQDADIFLLDDPFSPVDDHTGAHLFK 523
DLEV PF DQT+IGERGINLSGGQKQRIQIAR LYQDADI+L DDPFS VD HTG+HLFK
Sbjct: 730 DLEVFPFRDQTVIGERGINLSGGQKQRIQIARALYQDADIYLFDDPFSAVDAHTGSHLFK 789
Query: 524 --FCWVSSSKTVIYATHQVEFLPAADLILVIKDGKITQAGKYSDILNSGTDFMELVGAHK 581
+ +KTVIY THQ+EFLP ADLILV+KDG+ITQAGKY++IL SGTDFMELVGAH
Sbjct: 790 EVLLGLLRNKTVIYVTHQLEFLPEADLILVMKDGRITQAGKYNEILESGTDFMELVGAHT 849
Query: 582 QALSGLDSIDRGPVSERKSINKENDGTSTTNEIVNKEENKNFQSDDEAALPKGQLVQEEE 641
AL+ +DS ++G S + + +KE+ ++ N EE + +++ PKGQLVQEEE
Sbjct: 850 DALAAVDSYEKGSASAQSTTSKES-------KVSNDEEKQ----EEDLPSPKGQLVQEEE 898
Query: 642 REKGKVGFSVYWKYMTTAYGGVLVPXXXXXXXXXXXXXXGSNYWMAWATPVAKDVNPAVG 701
REKGKVGF+VY KYM AYGG LVP GSNYWMAW TPV+KDV P V
Sbjct: 899 REKGKVGFTVYQKYMKLAYGGALVPIILVVQILFQVLNIGSNYWMAWVTPVSKDVKPLVS 958
Query: 702 ASTLIIVYVG------------------AGYKTATQLFNKMHVCIFRAPMYFFDSTPSGR 743
STLI+VYV G+K AT+LFN+MH IFRA M FFD+TP GR
Sbjct: 959 GSTLILVYVFLATASSFCILVRAMLSAMTGFKIATELFNQMHFRIFRASMSFFDATPIGR 1018
Query: 744 ILNRVSENVKWADQSAADMDIPYDIGAFAFSMIQLLGIIVVMSLVAWQVLIVFVPVIATF 803
ILNR S DQSA D+ +P A + + +LGII VM VAWQVLIVF+PVIA
Sbjct: 1019 ILNRAS-----TDQSAVDLRLPSQFSNLAIAAVNILGIIGVMGQVAWQVLIVFIPVIAAC 1073
Query: 804 IWYQQYYITSTRELSRLIGVCKAPVIQQFSETISGSTTIRSLDQELRFRDTNMKLIDEYS 863
WY+QYYI++ REL+RL G+ ++P++Q FSET+SG TTIRS DQE RFR M+L D YS
Sbjct: 1074 TWYRQYYISAARELARLSGISRSPLVQHFSETLSGITTIRSFDQEPRFRTDIMRLNDCYS 1133
Query: 864 RPKFHIAGAMEWLRFCIDMLSSITFAFSLAFLISVPNGIIHP 905
R +FH AMEWL F +D+LS++ FA SL L+SVP G+I+P
Sbjct: 1134 RLRFHAISAMEWLCFRLDLLSTVAFALSLVILVSVPEGVINP 1175
|
|
| TAIR|locus:2090039 ABCC6 "ATP-binding cassette C6" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 2170 (768.9 bits), Expect = 0., Sum P(4) = 0.
Identities = 442/762 (58%), Positives = 542/762 (71%)
Query: 173 LIAVDAERALLILYKKXXXXXXXXXXXXXXVMLANFPLGRLREKFQDKFMETKDRRIKAT 232
++ + AL ILYK VMLAN+P +L EKFQ M++KD R+K T
Sbjct: 407 ILVLQVSLALWILYKSLGLGSIAAFPATILVMLANYPFAKLEEKFQSSLMKSKDNRMKKT 466
Query: 233 SEILRNMRILKLQGWELK--------KN-ETAWLKKSVYTEAMISFFCWGAPTFVSVVTF 283
SE+L NM+ILKLQGWE+K ++ E WLKK VY + I+ W AP+F+S F
Sbjct: 467 SEVLLNMKILKLQGWEMKFLSKILELRHIEAGWLKKFVYNSSAINSVLWAAPSFISATAF 526
Query: 284 GSCILLGIPLESGMILSALTTFKILQEPIYYLPESISMMIQAKVPLDRIASFLCLEGLQT 343
G+C+LL IPLESG IL+AL TF+ILQ PIY LPE+ISM++Q KV L+RIASFLCL+ LQ
Sbjct: 527 GACLLLKIPLESGKILAALATFRILQGPIYKLPETISMIVQTKVSLNRIASFLCLDDLQQ 586
Query: 344 DVLEKMPRGNSDTAIEIIDGSFSWDFSSPNPTLRNINLKVFHGMRVAVCGTVGSGKSSCL 403
DV+ ++P G+S+ A+EI +G+FSWD SSP PTLR++N KV GM VA+CGTVGSGKSS L
Sbjct: 587 DVVGRLPSGSSEMAVEISNGTFSWDDSSPIPTLRDMNFKVSQGMNVAICGTVGSGKSSLL 646
Query: 404 SCILGGVPKESGIIRLCGTKAYVAQSPWIQSGKIEENILFGKEMDRERYERVLEACSLKK 463
S ILG VPK SG +++CG KAY+AQSPWIQSGK+EENILFGK M+RE Y+RVLEACSL K
Sbjct: 647 SSILGEVPKISGNLKVCGRKAYIAQSPWIQSGKVEENILFGKPMEREWYDRVLEACSLNK 706
Query: 464 DLEVLPFGDQTIIGERGINLSGGQKQRIQIARPLYQDADIFLLDDPFSPVDDHTGAHLFK 523
DLE+LPF DQT+IGERGINLSGGQKQRIQIAR LYQDADI+L DDPFS VD HTG+HLFK
Sbjct: 707 DLEILPFHDQTVIGERGINLSGGQKQRIQIARALYQDADIYLFDDPFSAVDAHTGSHLFK 766
Query: 524 --FCWVSSSKTVIYATHQVEFLPAADLILVIKDGKITQAGKYSDILNSGTDFMELVGAHK 581
+ KTVIY THQVEFLP ADLILV+KDGKITQAGKY +IL+SGTDFMELVGAH
Sbjct: 767 EVLLGLLRHKTVIYVTHQVEFLPEADLILVMKDGKITQAGKYHEILDSGTDFMELVGAHT 826
Query: 582 QALSGLDSIDRGPVSERKSINKENDGTSTTNEIVNKEENKNFQSDDEAALPKGQLVQEEE 641
+AL+ +DS + G SE+ + +KEN E+++ +E + SD++ P GQLVQEEE
Sbjct: 827 EALATIDSCETGYASEKSTTDKEN-------EVLHHKEKQENGSDNK---PSGQLVQEEE 876
Query: 642 REKGKVGFSVYWKYMTTAYGGVLVPXXXXXXXXXXXXXXGSNYWMAWATPVAKDVNPAVG 701
REKGKVGF+VY KYM AYGG ++P GSNYWM W TPV+KDV P V
Sbjct: 877 REKGKVGFTVYKKYMALAYGGAVIPLILVVQVLFQLLSIGSNYWMTWVTPVSKDVEPPVS 936
Query: 702 ASTLIIVYV------------------GAGYKTATQLFNKMHVCIFRAPMYFFDSTPSGR 743
TLI+VYV G+K AT+LF +MH+ IFRA M FFD+TP GR
Sbjct: 937 GFTLILVYVLLAVASSFCILIRALLVAMTGFKMATELFTQMHLRIFRASMSFFDATPMGR 996
Query: 744 ILNRVSENVKWADQSAADMDIPYDIGAFAFSMIQLLGIIVVMSLVAWQVLIVFVPVIATF 803
ILNR S DQS AD+ +P A + I +LGII V+ VAWQVLIVF+PV+A
Sbjct: 997 ILNRAS-----TDQSVADLRLPGQFAYVAIAAINILGIIGVIVQVAWQVLIVFIPVVAAC 1051
Query: 804 IWYQQYYITSTRELSRLIGVCKAPVIQQFSETISGSTTIRSLDQELRFRDTNMKLIDEYS 863
WY+QYYI++ REL+RL G+ ++PV+ FSET+SG TTIRS DQE RFR M+L D YS
Sbjct: 1052 AWYRQYYISAARELARLAGISRSPVVHHFSETLSGITTIRSFDQEPRFRGDIMRLSDCYS 1111
Query: 864 RPKFHIAGAMEWLRFCIDMLSSITFAFSLAFLISVPNGIIHP 905
R KFH GAMEWL F +++LS+ FA SL L+S P G+I+P
Sbjct: 1112 RLKFHSTGAMEWLCFRLELLSTFAFASSLVILVSAPEGVINP 1153
|
|
| TAIR|locus:2020235 ABCC5 "ATP-binding cassette C5" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1212 (431.7 bits), Expect = 1.1e-260, Sum P(4) = 1.1e-260
Identities = 247/483 (51%), Positives = 323/483 (66%)
Query: 181 ALLILYKKXXXXXXXXXXXXXXVMLANFPLGRLREKFQDKFMETKDRRIKATSEILRNMR 240
AL ILYK +L PL +++E +QDK M KD R++ TSE LRNMR
Sbjct: 436 ALAILYKSVGIAAVATLVATIISILVTIPLAKVQEDYQDKLMTAKDERMRKTSECLRNMR 495
Query: 241 ILKLQGWE---------LKKNETAWLKKSVYTEAMISFFCWGAPTFVSVVTFGSCILLGI 291
+LKLQ WE +++ E WL+K++Y++A ++F W +P FV+ VTF + I LG
Sbjct: 496 VLKLQAWEDRYRVRLEEMREEEYGWLRKALYSQAFVTFIFWSSPIFVAAVTFATSIFLGT 555
Query: 292 PLESGMILSALTTFKILQEPIYYLPESISMMIQAKVPLDRIASFLCLEGLQTDVLEKMPR 351
L +G +LSAL TF+ILQEP+ P+ +SMM Q KV LDRI+ FL E LQ D +PR
Sbjct: 556 QLTAGGVLSALATFRILQEPLRNFPDLVSMMAQTKVSLDRISGFLQEEELQEDATVVIPR 615
Query: 352 GNSDTAIEIIDGSFSWDFSSPNPTLRNINLKVFHGMRVAVCGTVGSGKSSCLSCILGGVP 411
G S+ AIEI DG F WD S PTL I +KV GMRVAVCGTVGSGKSS +SCILG +P
Sbjct: 616 GLSNIAIEIKDGVFCWDPFSSRPTLSGIQMKVEKGMRVAVCGTVGSGKSSFISCILGEIP 675
Query: 412 KESGIIRLCGTKAYVAQSPWIQSGKIEENILFGKEMDRERYERVLEACSLKKDLEVLPFG 471
K SG +R+CGT YV+QS WIQSG IEENILFG M++ +Y+ V++ACSLKKD+E+ G
Sbjct: 676 KISGEVRICGTTGYVSQSAWIQSGNIEENILFGSPMEKTKYKNVIQACSLKKDIELFSHG 735
Query: 472 DQTIIGERGINLSGGQKQRIQIARPLYQDADIFLLDDPFSPVDDHTGAHLFKFCWVSS-- 529
DQTIIGERGINLSGGQKQR+Q+AR LYQDADI+LLDDPFS +D HTG+ LF+ +S+
Sbjct: 736 DQTIIGERGINLSGGQKQRVQLARALYQDADIYLLDDPFSALDAHTGSDLFRDYILSALA 795
Query: 530 SKTVIYATHQVEFLPAADLILVIKDGKITQAGKYSDILNSGTDFMELVGAHKQALSGLD- 588
KTV++ THQVEFLPAADLILV+K+G+I Q+GKY D+L +GTDF LV AH +A+ +D
Sbjct: 796 EKTVVFVTHQVEFLPAADLILVLKEGRIIQSGKYDDLLQAGTDFKALVSAHHEAIEAMDI 855
Query: 589 ------SIDRGPVSERKSI-NKENDGTSTTNEIVNKEENKNFQSDDEAALPKGQLVQEEE 641
D P+ + + N ++D E + KE + + D A+ + + +
Sbjct: 856 PSPSSEDSDENPIRDSLVLHNPKSDVFENDIETLAKEVQEGGSASDLKAIKEKKKKAKRS 915
Query: 642 REK 644
R+K
Sbjct: 916 RKK 918
|
|
| TAIR|locus:2077750 ABCC10 "ATP-binding cassette C10" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1268 (451.4 bits), Expect = 1.4e-211, Sum P(4) = 1.4e-211
Identities = 321/837 (38%), Positives = 458/837 (54%)
Query: 181 ALLILYKKXXXXXXXXXXXXXXVMLANFPLGRLREKFQDKFMETKDRRIKATSEILRNMR 240
AL IL+ +L N P+ +L+ KFQ + M ++D R+KA +E L NM+
Sbjct: 414 ALGILFHSVGVATFSALAVIILTVLCNAPIAKLQNKFQSELMTSQDERLKACNESLVNMK 473
Query: 241 ILKLQGWE---------LKKNETAWLKKSVYTEAMISFFCWGAPTFVSVVTFGSCILLGI 291
+LKL WE L+ E LK +A + W +P FVS TF +C L I
Sbjct: 474 VLKLYAWESHFKKVIEKLRNIELKSLKAVQMRKAYNAVLFWSSPVFVSAATFATCYFLDI 533
Query: 292 PLESGMILSALTTFKILQEPIYYLPESISMMIQAKVPLDRIASFLCLEGLQTDVLEKMPR 351
PL + + + + T +++Q+P+ +P+ I + IQAKV RIA+FL LQ + R
Sbjct: 534 PLRASNVFTFVATLRLVQDPVRMIPDVIGVTIQAKVAFSRIATFLEAPELQGGERRRKQR 593
Query: 352 --GNSDTAIEIIDGSFSWDFS-SPNPTLRNINLKVFHGMRVAVCGTVGSGKSSCLSCILG 408
GN + AI I SFSW+ S P LRN++L+V G +VAVCG VGSGKS+ L+ ILG
Sbjct: 594 SEGNQN-AIIIKSASFSWEEKGSTKPNLRNVSLEVKFGEKVAVCGEVGSGKSTLLAAILG 652
Query: 409 GVPKESGIIRLCGTKAYVAQSPWIQSGKIEENILFGKEMDRERYERVLEACSLKKDLEVL 468
P SG I GT AYV+Q+ WIQ+G I +NILFG MD RY ++ SL KDLE+L
Sbjct: 653 ETPCVSGTIDFYGTIAYVSQTAWIQTGTIRDNILFGGVMDEHRYRETIQKSSLDKDLELL 712
Query: 469 PFGDQTIIGERGINLSGGQKQRIQIARPLYQDADIFLLDDPFSPVDDHTGAHLFKFCWVS 528
P GDQT IGERG+NLSGGQKQRIQ+AR LYQDADI+LLDDPFS VD HT + LF+ +
Sbjct: 713 PDGDQTEIGERGVNLSGGQKQRIQLARALYQDADIYLLDDPFSAVDAHTASSLFQEYVMD 772
Query: 529 S--SKTVIYATHQVEFLPAADLILVIKDGKITQAGKYSDILNSGTDFMELVGAHKQALSG 586
+ K V+ THQV+FLPA D +L++ DG+IT+A Y ++L DF +LV AH++ +G
Sbjct: 773 ALAGKAVLLVTHQVDFLPAFDSVLLMSDGEITEADTYQELLARSRDFQDLVNAHRET-AG 831
Query: 587 LDSIDRGPVSERKSINKENDGTSTTNEIVNKEENKNFQSDDEAALPKGQLVQEEEREKGK 646
SER + EN T + KE N+ S + P +L+++EEREKG
Sbjct: 832 ---------SERV-VAVENP----TKPV--KEINRVISSQSKVLKPS-RLIKQEEREKGD 874
Query: 647 VGFSVYWKYMTTAYGGVLVPXXXXXXXXXXXXXXGSNYWMAWAT--PVAKD-----VNPA 699
G Y +YM G + N WMA P V
Sbjct: 875 TGLRPYIQYMNQNKGYIFFFIASLAQVTFAVGQILQNSWMAANVDNPQVSTLKLILVYLL 934
Query: 700 VGASTLIIVYVGAG------YKTATQLFNKMHVCIFRAPMYFFDSTPSGRILNRVSENVK 753
+G +++ + V + K++ LF+++ +FRAPM F+DSTP GRIL+RVS
Sbjct: 935 IGLCSVLCLMVRSVCVVIMCMKSSASLFSQLLNSLFRAPMSFYDSTPLGRILSRVS---- 990
Query: 754 WADQSAADMDIPYDIGAFAFSMIQLLGIIVVMSLVAWQVLIVFVPVIATFIWYQQYYITS 813
+D S D+D+P+ + S + + V+++V WQVL V VP++ Q+YY +
Sbjct: 991 -SDLSIVDLDVPFGLIFVVASSVNTGCSLGVLAIVTWQVLFVSVPMVYLAFRLQKYYFQT 1049
Query: 814 TRELSRLIGVCKAPVIQQFSETISGSTTIRSLDQELRFRDTNMKLIDEYSRPKFHIAGAM 873
+EL R+ G ++ V +E+++G+ TIR+ D+E RF ++ LID + P FH A
Sbjct: 1050 AKELMRINGTTRSYVANHLAESVAGAITIRAFDEEERFFKKSLTLIDTNASPFFHSFAAN 1109
Query: 874 EWL---------------RFCIDMLSSITFA-----FSLAFLISVPNGIIHPYKN---LE 910
EWL FC+ +L + TF+ +L++ +S+ G+++ +N L
Sbjct: 1110 EWLIQRLETVSAIVLASTAFCMILLPTGTFSSGFIGMALSYGLSLNMGLVYSVQNQCYLA 1169
Query: 911 RKIISVERILQCACIPSEPALVIEATKPNNSRPSHGEVNIRHLQVRYAPNLPLVLRG 967
IISVER+ Q + E VIE T+P + P G V I LQ+RY PLVL+G
Sbjct: 1170 NWIISVERLNQYTHLTPEAPEVIEETRPPVNWPVTGRVEISDLQIRYRRESPLVLKG 1226
|
|
| TAIR|locus:2043268 ABCC4 "ATP-binding cassette C4" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1002 (357.8 bits), Expect = 1.3e-181, Sum P(4) = 1.3e-181
Identities = 223/559 (39%), Positives = 322/559 (57%)
Query: 173 LIAVDAERALLILYKKXXXXXXXXXXXXXXVMLANFPLGRLREK-FQDKFMETKDRRIKA 231
L+ + AL++LY V + LG R +Q M +D R+KA
Sbjct: 447 LMPLQVTVALVLLYGSLGASVITAVIGLTGVFVFIL-LGTQRNNGYQFSLMGNRDSRMKA 505
Query: 232 TSEILRNMRILKLQGWELKKN---------ETAWLKKSVYTEAMISFFCWGAPTFVSVVT 282
T+E+L MR++K Q WE N E WL K +Y+ A W P +S +T
Sbjct: 506 TNEMLNYMRVIKFQAWENHFNKRILKFRDMEFGWLSKFLYSIAGNIIVLWSTPVLISALT 565
Query: 283 FGSCILLGIPLESGMILSALTTFKILQEPIYYLPESISMMIQAKVPLDRIASFLCLEGLQ 342
F + + LG+ L++G + + T FKILQEPI P+S+ + QA + L R+ S++ + L
Sbjct: 566 FATALALGVKLDAGTVFTTTTIFKILQEPIRTFPQSMISLSQAMISLGRLDSYMMSKELS 625
Query: 343 TDVLEKMPRGNSDTAIEIIDGSFSWDFSSPNPTLRNINLKVFHGMRVAVCGTVGSGKSSC 402
D +E+ + +TA+E+ DGSFSWD P L +IN KV G A+ GTVGSGKSS
Sbjct: 626 EDAVERALGCDGNTAVEVRDGSFSWDDEDNEPALSDINFKVKKGELTAIVGTVGSGKSSL 685
Query: 403 LSCILGGVPKESGIIRLCGTKAYVAQSPWIQSGKIEENILFGKEMDRERYERVLEACSLK 462
L+ +LG + + SG +R+CG+ YVAQ+ WI++G +++NILFG M RE+Y +VL CSL+
Sbjct: 686 LASVLGEMHRISGQVRVCGSTGYVAQTSWIENGTVQDNILFGLPMVREKYNKVLNVCSLE 745
Query: 463 KDLEVLPFGDQTIIGERGINLSGGQKQRIQIARPLYQDADIFLLDDPFSPVDDHTGAHLF 522
KDL+++ FGD+T IGERGINLSGGQKQRIQ+AR +YQ+ D++LLDD FS VD HTG+ +F
Sbjct: 746 KDLQMMEFGDKTEIGERGINLSGGQKQRIQLARAVYQECDVYLLDDVFSAVDAHTGSDIF 805
Query: 523 KFC--WVSSSKTVIYATHQVEFLPAADLILVIKDGKITQAGKYSDILNSGTDFMELVGAH 580
K C KTV+ THQV+FL D ILV++DGKI ++GKY ++++SG DF ELV AH
Sbjct: 806 KKCVRGALKGKTVLLVTHQVDFLHNVDCILVMRDGKIVESGKYDELVSSGLDFGELVAAH 865
Query: 581 KQAL----SGLDSI-----DRGPVSERKSINKENDGTSTTNEIVNKEENKNFQSDDEAAL 631
+ ++ +G DS R P S S + + + +++ N E K+F
Sbjct: 866 ETSMELVEAGADSAAVATSPRTPTSPHASSPRTSMESPHLSDL-NDEHIKSFLGS-HIVE 923
Query: 632 PKGQLVQEEEREKGKVGFSVYWKYMTTAYGGVLVPXXXXXXXXXXXXXXGSNYWMAWATP 691
+L++EEERE G+V VY +Y T AYG + S+YW+A+ T
Sbjct: 924 DGSKLIKEEERETGQVSLGVYKQYCTEAYGWWGIVLVLFFSLTWQGSLMASDYWLAYETS 983
Query: 692 VAKDVNPAVGASTLIIVYV 710
++ AS I+ YV
Sbjct: 984 AKNAIS--FDASVFILGYV 1000
|
|
| TAIR|locus:2081755 ABCC14 "ATP-binding cassette C14" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 914 (326.8 bits), Expect = 4.4e-174, Sum P(4) = 4.4e-174
Identities = 186/436 (42%), Positives = 272/436 (62%)
Query: 173 LIAVDAERALLILYKKXXXXXXXXXXXXXXVMLANFPLGRLRE-KFQDKFMETKDRRIKA 231
L+ + A+++LY + + LG R ++Q M +D R+KA
Sbjct: 445 LMPLQVAAAIVLLYNTLGPSVVTTVIGLTGIFVFIL-LGTKRNNRYQFSLMMNRDSRMKA 503
Query: 232 TSEILRNMRILKLQGWE-------LK--KNETAWLKKSVYTEAMISFFCWGAPTFVSVVT 282
T+E+L MR++K Q WE LK + E WL K +Y+ A W P +S +T
Sbjct: 504 TNEMLNYMRVIKFQAWEDHFNERILKFREMEFGWLSKFLYSIAGNIIVLWSTPVLISALT 563
Query: 283 FGSCILLGIPLESGMILSALTTFKILQEPIYYLPESISMMIQAKVPLDRIASFLCLEGLQ 342
F + + LG+ L++G + + T FKILQEPI P+S+ + QA + L R+ +++ L
Sbjct: 564 FTTAVFLGVKLDAGTVFTTTTIFKILQEPIRTFPQSMISLSQAMISLGRLDAYMMSRELS 623
Query: 343 TDVLEKMPRGNSDTAIEIIDGSFSWDFSSPNPTLRNINLKVFHGMRVAVCGTVGSGKSSC 402
+ +E+ + + A+EI DGSFSWD P + NIN +V G A+ GTVGSGKSS
Sbjct: 624 EETVERSQGCDGNVAVEIKDGSFSWDDEDDEPAIENINFEVKKGELAAIVGTVGSGKSSL 683
Query: 403 LSCILGGVPKESGIIRLCGTKAYVAQSPWIQSGKIEENILFGKEMDRERYERVLEACSLK 462
L+ +LG + K SG +R+CGT AYVAQ+ WIQ+G +++NILFG M+R +Y VL+ C L+
Sbjct: 684 LASVLGEMHKLSGKVRVCGTTAYVAQTSWIQNGTVQDNILFGLPMNRSKYNEVLKVCCLE 743
Query: 463 KDLEVLPFGDQTIIGERGINLSGGQKQRIQIARPLYQDADIFLLDDPFSPVDDHTGAHLF 522
KD++++ FGDQT IGERGINLSGGQKQRIQ+AR +YQ++D++LLDD FS VD HTG+ +F
Sbjct: 744 KDMQIMEFGDQTEIGERGINLSGGQKQRIQLARAVYQESDVYLLDDVFSAVDAHTGSDIF 803
Query: 523 KFC--WVSSSKTVIYATHQVEFLPAADLILVIKDGKITQAGKYSDILNSGTDFMELVGAH 580
K C KT++ THQV+FL D ILV++DG I Q+GKY ++++SG DF ELV AH
Sbjct: 804 KKCVRGALKGKTILLVTHQVDFLHNVDRILVMRDGMIVQSGKYDELVSSGLDFGELVAAH 863
Query: 581 KQALSGLDSIDRGPVS 596
+ + ++ ++ G S
Sbjct: 864 E---TSMELVEAGSAS 876
|
|
| UNIPROTKB|J9P084 LOC478384 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] | Back alignment and assigned GO terms |
|---|
Score = 885 (316.6 bits), Expect = 6.1e-152, Sum P(5) = 6.1e-152
Identities = 245/730 (33%), Positives = 380/730 (52%)
Query: 215 EKFQDKFMETKDRRIKATSEILRNMRILKLQGWE---------LKKNETAWLKKSVYTE- 264
+K + + KD++IK +EIL ++ILKL WE +++ E K + Y
Sbjct: 246 KKLKKSQTKNKDKQIKLLNEILHGIKILKLYAWEPSYKKKIIEIREQELEVQKSAGYLAV 305
Query: 265 -AMISFFCWGAPTFVSVVTFGSCILL--GIPLESGMILSALTTFKILQEPIYYLPESISM 321
+M++ C P VS+ TFG LL G L + + ++++ F IL+ P++ LP IS
Sbjct: 306 FSMLTLTC--IPFLVSLATFGIYFLLDEGNILTATKVFTSMSLFNILRLPLFDLPVVISA 363
Query: 322 MIQAKVPLDRIASFLCLEGLQTDVLEKMPRGNSDTAIEIIDGSFSWDFSSPNPTLRNINL 381
++Q ++ LDR+ FL E L +E G D AI + SFSWD P L+N+N+
Sbjct: 364 VVQTRISLDRLEDFLNTEELLPQNIETNYVG--DHAIGFTNASFSWD-KKGIPVLKNLNI 420
Query: 382 KVFHGMRVAVCGTVGSGKSSCLSCILGGVPKESGIIRLCGTKAYVAQSPWIQSGKIEENI 441
K+ G VAV G VGSGKSS LS ILG + K +G+++ G+ AYVAQ WIQ+ ++ENI
Sbjct: 421 KIPEGALVAVVGQVGSGKSSVLSAILGEMEKLTGVVQRKGSVAYVAQQAWIQNCILQENI 480
Query: 442 LFGKEMDRERYERVLEACSLKKDLEVLPFGDQTIIGERGINLSGGQKQRIQIARPLYQDA 501
LFG M ++ YERVLEAC+L DLE LP GDQT IGERG+N+SGGQK R+ +AR +Y A
Sbjct: 481 LFGSIMQKQFYERVLEACALLPDLEQLPNGDQTEIGERGVNISGGQKHRVSLARAVYSGA 540
Query: 502 DIFLLDDPFSPVDDHTGAHLFKFCWVSSS----KTVIYATHQVEFLPAADLILVIKDGKI 557
DI+LLDDP S VD G LF+ SS KT I TH + LP DLI+V++ G+I
Sbjct: 541 DIYLLDDPLSAVDVQIGKQLFEKVIGSSGILKHKTRILVTHNLTLLPQMDLIVVMESGRI 600
Query: 558 TQAGKYSDILNSGTDFMELVGAHKQALSGLDSIDRGPVSERKSINKENDGTSTTNEIVNK 617
Q G Y D+L+ + L+ A + ++ +R S+ N T ++I+
Sbjct: 601 AQMGTYQDLLSKTRNLKNLLQAFNEQ-------EKAHALKRVSVI--NSRTILKDQIL-- 649
Query: 618 EENKNFQSDDEAALPKGQL--VQEEEREKGKVGFSVYWKYMTTAYGGVLVPXXXXXXXXX 675
E+N D +L +G+ +++E+ G V F++ KY+ A+G + V
Sbjct: 650 EQN------DRPSLDQGKQFSMKKEKIPIGGVKFAIILKYLQ-AFGWLWVWLSVATYVGQ 702
Query: 676 XXXXXGSNYWM-AWATPVAKDVNPAV-------------GASTLI---IVYVGAGYKTAT 718
G N W+ AWA AK +N G LI V GA T
Sbjct: 703 NLVGIGQNLWLTAWAKE-AKHMNEFTEWKQIRNNKLNIYGLLGLIQGLFVCSGAYILTRG 761
Query: 719 QLF--NKMHVC----IFRAPMYFFDSTPSGRILNRVSENVKWADQSAADMDIPYDIGAFA 772
L +H + P+ FF++ P G+I+NR ++ D D+ Y + +
Sbjct: 762 SLAASRTLHAQLLDNVLHLPLRFFETNPIGQIINRFTK-----DMFIIDIRFHYYLRTWV 816
Query: 773 FSMIQLLGIIVVMSLVAWQVLIVFVPVIATFIWYQQYYITSTRELSRLIGVCKAPVIQQF 832
+ ++G ++V+ ++ +P++ + Q+YY+ S+R++ RL G ++P+I F
Sbjct: 817 NCTLDVIGTVLVIGGALPPFILGVIPLVFLYFTIQRYYVASSRQIRRLAGASRSPIISHF 876
Query: 833 SETISGSTTIRSLDQELRFRDTNMKLIDEYSRPKFHIAGAMEWLRFCIDMLSSITFAFSL 892
SET+SG +TIR+ E RF N ++++E ++ + WL ++ L ++ F+
Sbjct: 877 SETLSGVSTIRAFGHEQRFIQQNKEVVNENLVCFYNNVISNRWLSVRLEFLGNLMVFFAA 936
Query: 893 AFLISVPNGI 902
+ N I
Sbjct: 937 LLAVLAGNSI 946
|
|
| DICTYBASE|DDB_G0284867 abcC8 "ABC transporter C family protein" [Dictyostelium discoideum (taxid:44689)] | Back alignment and assigned GO terms |
|---|
Score = 722 (259.2 bits), Expect = 4.0e-151, Sum P(6) = 4.0e-151
Identities = 168/470 (35%), Positives = 263/470 (55%)
Query: 181 ALLILYKKXXXXXXXXXXXXXXVMLANFPLGRLREKFQDKFMETKDRRIKATSEILRNMR 240
+L++LY+ ++ N + L +K Q M+ KDRR KA +E+L ++
Sbjct: 409 SLVLLYRILNASVFAGLGIMLVMIPINLAISNLAKKRQTISMKLKDRRTKAVNEVLNGIK 468
Query: 241 ILKLQGWE---------LKKNETAWLKKSVYTEAMISFFCWG-APTFVSVVTFGSCILLG 290
++KL WE ++ E +K Y + S W +P FVSV TF IL G
Sbjct: 469 VIKLYSWEQSFMDHVNEIRNKELDVMKAIKYIQGF-SLLLWSMSPVFVSVSTFTVYILTG 527
Query: 291 IPLESGMILSALTTFKILQEPIYYLPESISMMIQAKVPLDRIASFLCLEGLQTDVLEKMP 350
L + AL+ F ++Q PI LP +S +I+A V + R+ FL + L +V+E
Sbjct: 528 QVLSATQAFPALSLFNVMQFPINMLPSVVSSIIEASVSVARLQKFLLKKDLDPNVVEHHI 587
Query: 351 RGNSDTAIEIIDGSFSWDFSSPN-PTLRNINLKVFHGMRVAVCGTVGSGKSSCLSCILGG 409
A++I + + W+ PN P L +INL + G VA+ G VGSGKSS +S ++G
Sbjct: 588 N-EPGIAVKIDNATLEWE---PNKPILHDINLTIKKGELVAIVGQVGSGKSSIVSSLVGD 643
Query: 410 VPKESGIIRLCGTKAYVAQSPWIQSGKIEENILFGKEMDRERYERVLEACSLKKDLEVLP 469
+ K G + + G+ A V+Q WIQ+ ++ NILF KE+++++Y+ V++AC L+ D+++LP
Sbjct: 644 LDKTKGTVAVNGSVALVSQQAWIQNATLKNNILFAKELNQDKYQSVVQACCLEPDIKILP 703
Query: 470 FGDQTIIGERGINLSGGQKQRIQIARPLYQDADIFLLDDPFSPVDDHTGAHLFKFCW--- 526
GDQT IGE+GINLSGGQKQR+ IAR +Y +ADI++ DDP S VD H G +FK
Sbjct: 704 GGDQTEIGEKGINLSGGQKQRVSIARAVYNNADIYIFDDPLSAVDAHVGKAIFKNVLSNQ 763
Query: 527 --VSSSKTVIYATHQVEFLPAADLILVIKDGKITQAGKYSDILNSGTDFMELVGAHKQAL 584
+ +KT I TH V +LP D I+++KDG+I + G ++ ++ +G+ F EL+ +H +
Sbjct: 764 DGILCNKTRILVTHAVHYLPYVDRIILMKDGRIVEEGDFNTLIEAGSHFTELM-SHDEQQ 822
Query: 585 SGLDSIDRGPVSERKSINKENDGTSTTNEIVNKEE-NKNFQSDDEAALPK 633
L + P ++ S + E G E N EE N+ + ++E L K
Sbjct: 823 QQLQQ-QQAP--DKSSDSNEQIGGGDNKESENNEEQNEEEEGENENLLEK 869
|
|
| UNIPROTKB|F1SK59 F1SK59 "Uncharacterized protein" [Sus scrofa (taxid:9823)] | Back alignment and assigned GO terms |
|---|
Score = 883 (315.9 bits), Expect = 6.3e-149, Sum P(5) = 6.3e-149
Identities = 252/740 (34%), Positives = 398/740 (53%)
Query: 215 EKFQDKFMETKDRRIKATSEILRNMRILKLQGWE--LKK----NETAWLK--KSV-YTE- 264
+K ++ M+TKD++IK EIL ++ILKL WE KK N L+ KS+ Y
Sbjct: 283 KKLKNSQMKTKDKQIKLLKEILHGIKILKLYAWEPSYKKKIIENREQELEVHKSIGYLAV 342
Query: 265 -AMISFFCWGAPTFVSVVTFGSCILL--GIPLESGMILSALTTFKILQEPIYYLPESISM 321
+M++ C P VS+ TFG LL G L + + ++++ F IL+ P++ LP +IS
Sbjct: 343 FSMLTLTC--IPFLVSLATFGIYFLLDEGNILTAAKVFTSMSLFNILRLPLFDLPTAISA 400
Query: 322 MIQAKVPLDRIASFLCLEGLQTDVLEKMPRGNSDTAIEIIDGSFSWDFSSPNPTLRNINL 381
++Q K+ L R+ FL E L +E G D AI + SFSWD + P L+++N+
Sbjct: 401 VVQTKLSLGRLEDFLNSEELLPQSIETNYVG--DHAIGFTNASFSWD-KTEIPVLKDLNI 457
Query: 382 KVFHGMRVAVCGTVGSGKSSCLSCILGGVPKESGIIRLCGTKAYVAQSPWIQSGKIEENI 441
K+ G VA+ G VGSGKSS LS ILG + K G+++ G+ AYV+Q WIQ+ +ENI
Sbjct: 458 KIPEGALVAIVGQVGSGKSSVLSAILGEMEKIKGVVQRKGSMAYVSQQAWIQNCIFQENI 517
Query: 442 LFGKEMDRERYERVLEACSLKKDLEVLPFGDQTIIGERGINLSGGQKQRIQIARPLYQDA 501
LFG M R+ YERVLEAC+L DLE LP GDQT IGERG+N+SGGQK R+ +AR +Y A
Sbjct: 518 LFGSVMQRQFYERVLEACALLPDLEQLPNGDQTEIGERGVNISGGQKHRVSLARAVYSGA 577
Query: 502 DIFLLDDPFSPVDDHTGAHLFKFCWVSS----SKTVIYATHQVEFLPAADLILVIKDGKI 557
DI+LLDDP S VD H G LF+ SS +KT I TH + LP DLI+V++ G++
Sbjct: 578 DIYLLDDPLSAVDVHVGKQLFEKVIGSSGILKNKTRILVTHNLTLLPQMDLIVVMEGGRV 637
Query: 558 TQAGKYSDILNSG---TDFMELVGAHKQALSGLDSIDRGPVSERKSINKENDGTSTTNEI 614
Q G Y ++L+ T+F+++ ++ ++ R + K++ K+
Sbjct: 638 AQMGTYQELLSKTKNLTNFLQIFSEQEKD----HALRRVSIINSKTVLKD---------- 683
Query: 615 VNKEENKNFQSDDEAALPKGQ--LVQEEEREKGKVGFSVYWKYMTTAYGGVLVPXXXXXX 672
K + +D L +G+ V++E+ G V FS+ KY+ A+G + V
Sbjct: 684 ------KVLEQNDRPLLDQGEHFSVRKEKVPVGGVKFSIILKYLQ-AFGWLWVWLNMALY 736
Query: 673 XXXXXXXXGSNYWMA-WATPVAKDVNP-----AVGASTLII------------VYVGA-- 712
G N W++ WA AK ++ + ++ L I V++ +
Sbjct: 737 LGQNLMGIGQNLWLSSWAKE-AKHMSDFTERKQIRSNKLSIYGLLGLMQEALFVFIRSYT 795
Query: 713 ---GYKTATQ-LFNKMHVCIFRAPMYFFDSTPSGRILNRVSENVKWADQSAADMDIPYDI 768
G A++ L ++ + P+ FF+ P G+I+NR ++ D DM Y +
Sbjct: 796 VMRGSLAASRTLHAQLLDNVLHLPLQFFEINPIGQIINRFTK-----DMFIIDMRFHYYL 850
Query: 769 GAFAFSMIQLLGIIVVMSLVAWQVLIV-FVPVIATFIWYQQYYITSTRELSRLIGVCKAP 827
+ + ++G ++V+ + A+ + I+ +P++ + Q+YY+ S+R++ RL G ++P
Sbjct: 851 RTWVNCTLDVIGTVLVI-VGAFPLFILGVIPLVFLYFTIQRYYMASSRQIRRLAGASRSP 909
Query: 828 VIQQFSETISGSTTIRSLDQELRFRDTNMKLIDEYSRPKFHIAGAMEWLRFCIDMLSS-- 885
VI FSET+SG +TIR+ E RF N +L++E ++ A WL ++ L +
Sbjct: 910 VISHFSETLSGVSTIRAFGHEQRFIRQNKELVNENLICFYNSVIANRWLSVRLEFLGNLM 969
Query: 886 ITFAFSLAFLI--SVPNGII 903
+ FA LA L S+ + I+
Sbjct: 970 VLFAALLAVLAGDSIDSAIV 989
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries 
Original result of BLAST against SWISS-PROT
ID ![]() | Name ![]() | Annotated EC number ![]() | Identity ![]() | Query coverage ![]() | Hit coverage ![]() | RBH(Q2H) ![]() | RBH(H2Q) ![]() |
| Q9LK64 | AB3C_ARATH | 3, ., 6, ., 3, ., 4, 4 | 0.6281 | 0.9939 | 0.7589 | yes | no |
EC Number Prediction by Ezypred Server 
Original result from Ezypred Server
Fail to connect to Ezypred Server
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING 
Original result from the STRING server
| Your Input: | |||||||||||
| fgenesh4_pm.C_LG_I001151 | multidrug resistance protein ABC transporter family (1488 aa) | ||||||||||
(Populus trichocarpa) | |||||||||||
Predicted Functional Partners: | |||||||||||
| Sorry, there are no predicted associations at the current settings. | |||||||||||
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST 
Original result of RPS-BLAST against CDD database part I
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| Query | 1156 | |||
| TIGR00957 | 1522 | TIGR00957, MRP_assoc_pro, multi drug resistance-as | 0.0 | |
| PLN03130 | 1622 | PLN03130, PLN03130, ABC transporter C family membe | 0.0 | |
| PLN03232 | 1495 | PLN03232, PLN03232, ABC transporter C family membe | 0.0 | |
| PTZ00243 | 1560 | PTZ00243, PTZ00243, ABC transporter; Provisional | 1e-138 | |
| cd03250 | 204 | cd03250, ABCC_MRP_domain1, ATP-binding cassette do | 5e-96 | |
| cd03244 | 221 | cd03244, ABCC_MRP_domain2, ATP-binding cassette do | 3e-91 | |
| cd03369 | 207 | cd03369, ABCC_NFT1, ATP-binding cassette domain 2 | 5e-70 | |
| COG1132 | 567 | COG1132, MdlB, ABC-type multidrug transport system | 3e-61 | |
| TIGR01271 | 1490 | TIGR01271, CFTR_protein, cystic fibrosis transmemb | 5e-61 | |
| cd03288 | 257 | cd03288, ABCC_SUR2, ATP-binding cassette domain 2 | 4e-55 | |
| cd03290 | 218 | cd03290, ABCC_SUR1_N, ATP-binding cassette domain | 8e-55 | |
| cd03291 | 282 | cd03291, ABCC_CFTR1, ATP-binding cassette domain o | 9e-52 | |
| TIGR01271 | 1490 | TIGR01271, CFTR_protein, cystic fibrosis transmemb | 1e-49 | |
| COG1132 | 567 | COG1132, MdlB, ABC-type multidrug transport system | 1e-44 | |
| COG2274 | 709 | COG2274, SunT, ABC-type bacteriocin/lantibiotic ex | 2e-44 | |
| COG2274 | 709 | COG2274, SunT, ABC-type bacteriocin/lantibiotic ex | 6e-38 | |
| TIGR02203 | 571 | TIGR02203, MsbA_lipidA, lipid A export permease/AT | 3e-37 | |
| cd03228 | 171 | cd03228, ABCC_MRP_Like, ATP-binding cassette domai | 4e-37 | |
| cd03289 | 275 | cd03289, ABCC_CFTR2, ATP-binding cassette domain 2 | 1e-36 | |
| cd03254 | 229 | cd03254, ABCC_Glucan_exporter_like, ATP-binding ca | 4e-36 | |
| COG4988 | 559 | COG4988, CydD, ABC-type transport system involved | 5e-36 | |
| cd03253 | 236 | cd03253, ABCC_ATM1_transporter, ATP-binding casset | 4e-35 | |
| cd03245 | 220 | cd03245, ABCC_bacteriocin_exporters, ATP-binding c | 5e-35 | |
| TIGR02857 | 529 | TIGR02857, CydD, thiol reductant ABC exporter, Cyd | 7e-35 | |
| COG4988 | 559 | COG4988, CydD, ABC-type transport system involved | 1e-34 | |
| PRK10790 | 592 | PRK10790, PRK10790, putative multidrug transporter | 3e-34 | |
| cd03251 | 234 | cd03251, ABCC_MsbA, ATP-binding cassette domain of | 7e-33 | |
| cd03228 | 171 | cd03228, ABCC_MRP_Like, ATP-binding cassette domai | 1e-32 | |
| cd03254 | 229 | cd03254, ABCC_Glucan_exporter_like, ATP-binding ca | 2e-32 | |
| PRK10789 | 569 | PRK10789, PRK10789, putative multidrug transporter | 3e-31 | |
| PRK11174 | 588 | PRK11174, PRK11174, cysteine/glutathione ABC trans | 5e-31 | |
| COG4987 | 573 | COG4987, CydC, ABC-type transport system involved | 1e-30 | |
| cd03251 | 234 | cd03251, ABCC_MsbA, ATP-binding cassette domain of | 2e-30 | |
| cd03253 | 236 | cd03253, ABCC_ATM1_transporter, ATP-binding casset | 3e-30 | |
| cd03249 | 238 | cd03249, ABC_MTABC3_MDL1_MDL2, ATP-binding cassett | 1e-29 | |
| COG4987 | 573 | COG4987, CydC, ABC-type transport system involved | 2e-29 | |
| TIGR01193 | 708 | TIGR01193, bacteriocin_ABC, ABC-type bacteriocin t | 3e-29 | |
| cd03249 | 238 | cd03249, ABC_MTABC3_MDL1_MDL2, ATP-binding cassett | 1e-28 | |
| TIGR03375 | 694 | TIGR03375, type_I_sec_LssB, type I secretion syste | 2e-28 | |
| TIGR03797 | 686 | TIGR03797, NHLM_micro_ABC2, NHLM bacteriocin syste | 2e-27 | |
| TIGR01842 | 544 | TIGR01842, type_I_sec_PrtD, type I secretion syste | 2e-26 | |
| TIGR02203 | 571 | TIGR02203, MsbA_lipidA, lipid A export permease/AT | 4e-26 | |
| cd03245 | 220 | cd03245, ABCC_bacteriocin_exporters, ATP-binding c | 5e-26 | |
| cd03225 | 211 | cd03225, ABC_cobalt_CbiO_domain1, First domain of | 5e-26 | |
| TIGR02868 | 530 | TIGR02868, CydC, thiol reductant ABC exporter, Cyd | 6e-26 | |
| cd03244 | 221 | cd03244, ABCC_MRP_domain2, ATP-binding cassette do | 9e-26 | |
| PRK13657 | 588 | PRK13657, PRK13657, cyclic beta-1,2-glucan ABC tra | 1e-25 | |
| TIGR01193 | 708 | TIGR01193, bacteriocin_ABC, ABC-type bacteriocin t | 3e-25 | |
| cd03252 | 237 | cd03252, ABCC_Hemolysin, ATP-binding cassette doma | 3e-25 | |
| TIGR02204 | 576 | TIGR02204, MsbA_rel, ABC transporter, permease/ATP | 1e-24 | |
| COG1122 | 235 | COG1122, CbiO, ABC-type cobalt transport system, A | 1e-24 | |
| COG5265 | 497 | COG5265, ATM1, ABC-type transport system involved | 1e-24 | |
| cd03252 | 237 | cd03252, ABCC_Hemolysin, ATP-binding cassette doma | 3e-24 | |
| TIGR03375 | 694 | TIGR03375, type_I_sec_LssB, type I secretion syste | 9e-24 | |
| COG4618 | 580 | COG4618, ArpD, ABC-type protease/lipase transport | 1e-23 | |
| TIGR00958 | 711 | TIGR00958, 3a01208, Conjugate Transporter-2 (CT2) | 2e-23 | |
| TIGR02204 | 576 | TIGR02204, MsbA_rel, ABC transporter, permease/ATP | 3e-23 | |
| COG1116 | 248 | COG1116, TauB, ABC-type nitrate/sulfonate/bicarbon | 3e-23 | |
| PRK11160 | 574 | PRK11160, PRK11160, cysteine/glutathione ABC trans | 5e-23 | |
| COG3839 | 338 | COG3839, MalK, ABC-type sugar transport systems, A | 5e-23 | |
| cd03248 | 226 | cd03248, ABCC_TAP, ATP-binding cassette domain of | 7e-23 | |
| cd00267 | 157 | cd00267, ABC_ATPase, ATP-binding cassette transpor | 1e-22 | |
| PRK11160 | 574 | PRK11160, PRK11160, cysteine/glutathione ABC trans | 2e-22 | |
| TIGR03796 | 710 | TIGR03796, NHLM_micro_ABC1, NHLM bacteriocin syste | 2e-22 | |
| cd03259 | 213 | cd03259, ABC_Carb_Solutes_like, ATP-binding casset | 2e-22 | |
| COG1120 | 258 | COG1120, FepC, ABC-type cobalamin/Fe3+-siderophore | 3e-22 | |
| PRK10790 | 592 | PRK10790, PRK10790, putative multidrug transporter | 5e-22 | |
| TIGR01846 | 694 | TIGR01846, type_I_sec_HlyB, type I secretion syste | 5e-22 | |
| TIGR02868 | 530 | TIGR02868, CydC, thiol reductant ABC exporter, Cyd | 6e-22 | |
| COG1125 | 309 | COG1125, OpuBA, ABC-type proline/glycine betaine t | 6e-22 | |
| cd03293 | 220 | cd03293, ABC_NrtD_SsuB_transporters, ATP-binding c | 6e-22 | |
| cd03299 | 235 | cd03299, ABC_ModC_like, ATP-binding cassette domai | 1e-21 | |
| cd03235 | 213 | cd03235, ABC_Metallic_Cations, ATP-binding cassett | 2e-21 | |
| TIGR01192 | 585 | TIGR01192, chvA, glucan exporter ATP-binding prote | 4e-21 | |
| PRK13657 | 588 | PRK13657, PRK13657, cyclic beta-1,2-glucan ABC tra | 8e-21 | |
| TIGR01846 | 694 | TIGR01846, type_I_sec_HlyB, type I secretion syste | 8e-21 | |
| PRK11176 | 582 | PRK11176, PRK11176, lipid transporter ATP-binding/ | 8e-21 | |
| cd03248 | 226 | cd03248, ABCC_TAP, ATP-binding cassette domain of | 2e-20 | |
| TIGR02857 | 529 | TIGR02857, CydD, thiol reductant ABC exporter, Cyd | 3e-20 | |
| COG3842 | 352 | COG3842, PotA, ABC-type spermidine/putrescine tran | 3e-20 | |
| cd03255 | 218 | cd03255, ABC_MJ0796_LolCDE_FtsE, ATP-binding casse | 3e-20 | |
| PRK11174 | 588 | PRK11174, PRK11174, cysteine/glutathione ABC trans | 4e-20 | |
| PRK11176 | 582 | PRK11176, PRK11176, lipid transporter ATP-binding/ | 5e-20 | |
| COG1131 | 293 | COG1131, CcmA, ABC-type multidrug transport system | 6e-20 | |
| PRK13632 | 271 | PRK13632, cbiO, cobalt transporter ATP-binding sub | 1e-19 | |
| TIGR00958 | 711 | TIGR00958, 3a01208, Conjugate Transporter-2 (CT2) | 2e-19 | |
| cd03214 | 180 | cd03214, ABC_Iron-Siderophores_B12_Hemin, ATP-bind | 2e-19 | |
| COG1136 | 226 | COG1136, SalX, ABC-type antimicrobial peptide tran | 2e-19 | |
| COG1121 | 254 | COG1121, ZnuC, ABC-type Mn/Zn transport systems, A | 8e-19 | |
| cd03247 | 178 | cd03247, ABCC_cytochrome_bd, ATP-binding cassette | 8e-19 | |
| COG5265 | 497 | COG5265, ATM1, ABC-type transport system involved | 2e-18 | |
| COG1131 | 293 | COG1131, CcmA, ABC-type multidrug transport system | 3e-18 | |
| cd03247 | 178 | cd03247, ABCC_cytochrome_bd, ATP-binding cassette | 4e-18 | |
| PRK11248 | 255 | PRK11248, tauB, taurine transporter ATP-binding su | 6e-18 | |
| PRK10789 | 569 | PRK10789, PRK10789, putative multidrug transporter | 1e-17 | |
| cd03295 | 242 | cd03295, ABC_OpuCA_Osmoprotection, ATP-binding cas | 1e-17 | |
| cd03229 | 178 | cd03229, ABC_Class3, ATP-binding cassette domain o | 1e-17 | |
| COG3840 | 231 | COG3840, ThiQ, ABC-type thiamine transport system, | 2e-17 | |
| cd03230 | 173 | cd03230, ABC_DR_subfamily_A, ATP-binding cassette | 2e-17 | |
| TIGR00968 | 237 | TIGR00968, 3a0106s01, sulfate ABC transporter, ATP | 2e-17 | |
| cd00267 | 157 | cd00267, ABC_ATPase, ATP-binding cassette transpor | 3e-17 | |
| TIGR01192 | 585 | TIGR01192, chvA, glucan exporter ATP-binding prote | 3e-17 | |
| cd03256 | 241 | cd03256, ABC_PhnC_transporter, ATP-binding cassett | 3e-17 | |
| cd03246 | 173 | cd03246, ABCC_Protease_Secretion, ATP-binding cass | 5e-17 | |
| COG1122 | 235 | COG1122, CbiO, ABC-type cobalt transport system, A | 1e-16 | |
| pfam00005 | 119 | pfam00005, ABC_tran, ABC transporter | 1e-16 | |
| cd03246 | 173 | cd03246, ABCC_Protease_Secretion, ATP-binding cass | 2e-16 | |
| PRK14250 | 241 | PRK14250, PRK14250, phosphate ABC transporter ATP- | 2e-16 | |
| COG3638 | 258 | COG3638, COG3638, ABC-type phosphate/phosphonate t | 2e-16 | |
| cd03264 | 211 | cd03264, ABC_drug_resistance_like, ABC-type multid | 3e-16 | |
| cd03288 | 257 | cd03288, ABCC_SUR2, ATP-binding cassette domain 2 | 4e-16 | |
| cd03301 | 213 | cd03301, ABC_MalK_N, The N-terminal ATPase domain | 4e-16 | |
| cd03261 | 235 | cd03261, ABC_Org_Solvent_Resistant, ATP-binding ca | 5e-16 | |
| COG4525 | 259 | COG4525, TauB, ABC-type taurine transport system, | 9e-16 | |
| COG4175 | 386 | COG4175, ProV, ABC-type proline/glycine betaine tr | 9e-16 | |
| COG4178 | 604 | COG4178, COG4178, ABC-type uncharacterized transpo | 9e-16 | |
| TIGR03796 | 710 | TIGR03796, NHLM_micro_ABC1, NHLM bacteriocin syste | 1e-15 | |
| TIGR01277 | 213 | TIGR01277, thiQ, thiamine ABC transporter, ATP-bin | 1e-15 | |
| COG1119 | 257 | COG1119, ModF, ABC-type molybdenum transport syste | 1e-15 | |
| pfam00664 | 274 | pfam00664, ABC_membrane, ABC transporter transmemb | 1e-15 | |
| cd03260 | 227 | cd03260, ABC_PstB_phosphate_transporter, ATP-bindi | 2e-15 | |
| cd03294 | 269 | cd03294, ABC_Pro_Gly_Betaine, ATP-binding cassette | 2e-15 | |
| COG1118 | 345 | COG1118, CysA, ABC-type sulfate/molybdate transpor | 2e-15 | |
| COG1127 | 263 | COG1127, Ttg2A, ABC-type transport system involved | 2e-15 | |
| COG4619 | 223 | COG4619, COG4619, ABC-type uncharacterized transpo | 3e-15 | |
| TIGR03797 | 686 | TIGR03797, NHLM_micro_ABC2, NHLM bacteriocin syste | 7e-15 | |
| cd03226 | 205 | cd03226, ABC_cobalt_CbiO_domain2, Second domain of | 8e-15 | |
| cd03225 | 211 | cd03225, ABC_cobalt_CbiO_domain1, First domain of | 1e-14 | |
| COG1129 | 500 | COG1129, MglA, ABC-type sugar transport system, AT | 1e-14 | |
| TIGR01186 | 363 | TIGR01186, proV, glycine betaine/L-proline transpo | 1e-14 | |
| cd03296 | 239 | cd03296, ABC_CysA_sulfate_importer, ATP-binding ca | 2e-14 | |
| PRK13647 | 274 | PRK13647, cbiO, cobalt transporter ATP-binding sub | 3e-14 | |
| cd03298 | 211 | cd03298, ABC_ThiQ_thiamine_transporter, ATP-bindin | 3e-14 | |
| cd03289 | 275 | cd03289, ABCC_CFTR2, ATP-binding cassette domain 2 | 4e-14 | |
| COG1121 | 254 | COG1121, ZnuC, ABC-type Mn/Zn transport systems, A | 5e-14 | |
| COG1123 | 539 | COG1123, COG1123, ATPase components of various ABC | 6e-14 | |
| cd03297 | 214 | cd03297, ABC_ModC_molybdenum_transporter, ATP-bind | 7e-14 | |
| TIGR02315 | 243 | TIGR02315, ABC_phnC, phosphonate ABC transporter, | 7e-14 | |
| cd03257 | 228 | cd03257, ABC_NikE_OppD_transporters, ATP-binding c | 8e-14 | |
| COG4555 | 245 | COG4555, NatA, ABC-type Na+ transport system, ATPa | 1e-13 | |
| PRK10851 | 353 | PRK10851, PRK10851, sulfate/thiosulfate transporte | 1e-13 | |
| COG1120 | 258 | COG1120, FepC, ABC-type cobalamin/Fe3+-siderophore | 2e-13 | |
| COG4148 | 352 | COG4148, ModC, ABC-type molybdate transport system | 2e-13 | |
| PRK14247 | 250 | PRK14247, PRK14247, phosphate ABC transporter ATP- | 2e-13 | |
| PRK11000 | 369 | PRK11000, PRK11000, maltose/maltodextrin transport | 2e-13 | |
| TIGR03608 | 206 | TIGR03608, L_ocin_972_ABC, putative bacteriocin ex | 2e-13 | |
| cd03216 | 163 | cd03216, ABC_Carb_Monos_I, First domain of the ATP | 2e-13 | |
| cd03235 | 213 | cd03235, ABC_Metallic_Cations, ATP-binding cassett | 3e-13 | |
| TIGR01187 | 325 | TIGR01187, potA, spermidine/putrescine ABC transpo | 3e-13 | |
| COG1137 | 243 | COG1137, YhbG, ABC-type (unclassified) transport s | 3e-13 | |
| PRK13650 | 279 | PRK13650, cbiO, cobalt transporter ATP-binding sub | 3e-13 | |
| cd03369 | 207 | cd03369, ABCC_NFT1, ATP-binding cassette domain 2 | 4e-13 | |
| COG3845 | 501 | COG3845, COG3845, ABC-type uncharacterized transpo | 4e-13 | |
| COG1135 | 339 | COG1135, AbcC, ABC-type metal ion transport system | 5e-13 | |
| COG1125 | 309 | COG1125, OpuBA, ABC-type proline/glycine betaine t | 7e-13 | |
| PTZ00265 | 1466 | PTZ00265, PTZ00265, multidrug resistance protein ( | 9e-13 | |
| PRK13635 | 279 | PRK13635, cbiO, cobalt transporter ATP-binding sub | 9e-13 | |
| TIGR01271 | 1490 | TIGR01271, CFTR_protein, cystic fibrosis transmemb | 1e-12 | |
| COG1123 | 539 | COG1123, COG1123, ATPase components of various ABC | 1e-12 | |
| cd03262 | 213 | cd03262, ABC_HisP_GlnQ, ATP-binding cassette domai | 1e-12 | |
| TIGR03258 | 362 | TIGR03258, PhnT, 2-aminoethylphosphonate ABC trans | 1e-12 | |
| cd03214 | 180 | cd03214, ABC_Iron-Siderophores_B12_Hemin, ATP-bind | 2e-12 | |
| pfam00005 | 119 | pfam00005, ABC_tran, ABC transporter | 2e-12 | |
| cd03257 | 228 | cd03257, ABC_NikE_OppD_transporters, ATP-binding c | 2e-12 | |
| COG0488 | 530 | COG0488, Uup, ATPase components of ABC transporter | 2e-12 | |
| PRK13652 | 277 | PRK13652, cbiO, cobalt transporter ATP-binding sub | 2e-12 | |
| TIGR03415 | 382 | TIGR03415, ABC_choXWV_ATP, choline ABC transporter | 2e-12 | |
| PRK13637 | 287 | PRK13637, cbiO, cobalt transporter ATP-binding sub | 2e-12 | |
| TIGR03410 | 230 | TIGR03410, urea_trans_UrtE, urea ABC transporter, | 2e-12 | |
| PTZ00265 | 1466 | PTZ00265, PTZ00265, multidrug resistance protein ( | 3e-12 | |
| PRK13644 | 274 | PRK13644, cbiO, cobalt transporter ATP-binding sub | 3e-12 | |
| COG1124 | 252 | COG1124, DppF, ABC-type dipeptide/oligopeptide/nic | 3e-12 | |
| COG1126 | 240 | COG1126, GlnQ, ABC-type polar amino acid transport | 3e-12 | |
| PRK13641 | 287 | PRK13641, cbiO, cobalt transporter ATP-binding sub | 4e-12 | |
| cd03229 | 178 | cd03229, ABC_Class3, ATP-binding cassette domain o | 5e-12 | |
| TIGR02315 | 243 | TIGR02315, ABC_phnC, phosphonate ABC transporter, | 5e-12 | |
| PRK13639 | 275 | PRK13639, cbiO, cobalt transporter ATP-binding sub | 6e-12 | |
| COG1123 | 539 | COG1123, COG1123, ATPase components of various ABC | 8e-12 | |
| cd03295 | 242 | cd03295, ABC_OpuCA_Osmoprotection, ATP-binding cas | 1e-11 | |
| PRK14250 | 241 | PRK14250, PRK14250, phosphate ABC transporter ATP- | 1e-11 | |
| cd03261 | 235 | cd03261, ABC_Org_Solvent_Resistant, ATP-binding ca | 1e-11 | |
| cd03260 | 227 | cd03260, ABC_PstB_phosphate_transporter, ATP-bindi | 1e-11 | |
| cd03263 | 220 | cd03263, ABC_subfamily_A, ATP-binding cassette dom | 1e-11 | |
| COG0410 | 237 | COG0410, LivF, ABC-type branched-chain amino acid | 1e-11 | |
| cd03223 | 166 | cd03223, ABCD_peroxisomal_ALDP, ATP-binding casset | 1e-11 | |
| PRK10535 | 648 | PRK10535, PRK10535, macrolide transporter ATP-bind | 1e-11 | |
| PRK10771 | 232 | PRK10771, thiQ, thiamine transporter ATP-binding s | 1e-11 | |
| PRK11247 | 257 | PRK11247, ssuB, aliphatic sulfonates transport ATP | 1e-11 | |
| cd03255 | 218 | cd03255, ABC_MJ0796_LolCDE_FtsE, ATP-binding casse | 2e-11 | |
| cd03256 | 241 | cd03256, ABC_PhnC_transporter, ATP-binding cassett | 2e-11 | |
| COG1124 | 252 | COG1124, DppF, ABC-type dipeptide/oligopeptide/nic | 2e-11 | |
| COG1117 | 253 | COG1117, PstB, ABC-type phosphate transport system | 2e-11 | |
| COG2884 | 223 | COG2884, FtsE, Predicted ATPase involved in cell d | 2e-11 | |
| PRK15056 | 272 | PRK15056, PRK15056, manganese/iron transporter ATP | 2e-11 | |
| PRK09536 | 402 | PRK09536, btuD, corrinoid ABC transporter ATPase; | 2e-11 | |
| TIGR03864 | 236 | TIGR03864, PQQ_ABC_ATP, ABC transporter, ATP-bindi | 2e-11 | |
| COG1123 | 539 | COG1123, COG1123, ATPase components of various ABC | 3e-11 | |
| TIGR02982 | 220 | TIGR02982, heterocyst_DevA, ABC exporter ATP-bindi | 3e-11 | |
| COG3638 | 258 | COG3638, COG3638, ABC-type phosphate/phosphonate t | 4e-11 | |
| cd03300 | 232 | cd03300, ABC_PotA_N, ATP-binding cassette domain o | 4e-11 | |
| cd03218 | 232 | cd03218, ABC_YhbG, ATP-binding cassette component | 4e-11 | |
| cd03299 | 235 | cd03299, ABC_ModC_like, ATP-binding cassette domai | 5e-11 | |
| COG1135 | 339 | COG1135, AbcC, ABC-type metal ion transport system | 5e-11 | |
| TIGR00972 | 247 | TIGR00972, 3a0107s01c2, phosphate ABC transporter, | 5e-11 | |
| PRK13537 | 306 | PRK13537, PRK13537, nodulation ABC transporter Nod | 5e-11 | |
| PRK09452 | 375 | PRK09452, potA, putrescine/spermidine ABC transpor | 5e-11 | |
| TIGR03265 | 353 | TIGR03265, PhnT2, putative 2-aminoethylphosphonate | 5e-11 | |
| cd03294 | 269 | cd03294, ABC_Pro_Gly_Betaine, ATP-binding cassette | 7e-11 | |
| TIGR02142 | 354 | TIGR02142, modC_ABC, molybdenum ABC transporter, A | 7e-11 | |
| cd03224 | 222 | cd03224, ABC_TM1139_LivF_branched, ATP-binding cas | 8e-11 | |
| TIGR01842 | 544 | TIGR01842, type_I_sec_PrtD, type I secretion syste | 1e-10 | |
| PRK13632 | 271 | PRK13632, cbiO, cobalt transporter ATP-binding sub | 1e-10 | |
| cd03230 | 173 | cd03230, ABC_DR_subfamily_A, ATP-binding cassette | 1e-10 | |
| COG4619 | 223 | COG4619, COG4619, ABC-type uncharacterized transpo | 1e-10 | |
| TIGR01166 | 190 | TIGR01166, cbiO, cobalt transport protein ATP-bind | 1e-10 | |
| TIGR01166 | 190 | TIGR01166, cbiO, cobalt transport protein ATP-bind | 2e-10 | |
| cd03258 | 233 | cd03258, ABC_MetN_methionine_transporter, ATP-bind | 2e-10 | |
| TIGR01189 | 198 | TIGR01189, ccmA, heme ABC exporter, ATP-binding pr | 2e-10 | |
| cd03262 | 213 | cd03262, ABC_HisP_GlnQ, ATP-binding cassette domai | 3e-10 | |
| COG3839 | 338 | COG3839, MalK, ABC-type sugar transport systems, A | 4e-10 | |
| cd03259 | 213 | cd03259, ABC_Carb_Solutes_like, ATP-binding casset | 4e-10 | |
| cd03258 | 233 | cd03258, ABC_MetN_methionine_transporter, ATP-bind | 4e-10 | |
| PRK13640 | 282 | PRK13640, cbiO, cobalt transporter ATP-binding sub | 4e-10 | |
| PRK13631 | 320 | PRK13631, cbiO, cobalt transporter ATP-binding sub | 4e-10 | |
| cd03264 | 211 | cd03264, ABC_drug_resistance_like, ABC-type multid | 6e-10 | |
| TIGR01187 | 325 | TIGR01187, potA, spermidine/putrescine ABC transpo | 6e-10 | |
| TIGR02673 | 214 | TIGR02673, FtsE, cell division ATP-binding protein | 6e-10 | |
| TIGR01184 | 230 | TIGR01184, ntrCD, nitrate transport ATP-binding su | 7e-10 | |
| PRK09700 | 510 | PRK09700, PRK09700, D-allose transporter ATP-bindi | 7e-10 | |
| PRK14246 | 257 | PRK14246, PRK14246, phosphate ABC transporter ATP- | 8e-10 | |
| cd03215 | 182 | cd03215, ABC_Carb_Monos_II, Second domain of the A | 1e-09 | |
| COG1118 | 345 | COG1118, CysA, ABC-type sulfate/molybdate transpor | 2e-09 | |
| cd03263 | 220 | cd03263, ABC_subfamily_A, ATP-binding cassette dom | 2e-09 | |
| PRK13539 | 207 | PRK13539, PRK13539, cytochrome c biogenesis protei | 2e-09 | |
| PRK14262 | 250 | PRK14262, PRK14262, phosphate ABC transporter ATP- | 2e-09 | |
| cd03292 | 214 | cd03292, ABC_FtsE_transporter, ATP-binding cassett | 2e-09 | |
| PRK13651 | 305 | PRK13651, PRK13651, cobalt transporter ATP-binding | 2e-09 | |
| TIGR00972 | 247 | TIGR00972, 3a0107s01c2, phosphate ABC transporter, | 3e-09 | |
| COG4608 | 268 | COG4608, AppF, ABC-type oligopeptide transport sys | 3e-09 | |
| PRK13642 | 277 | PRK13642, cbiO, cobalt transporter ATP-binding sub | 3e-09 | |
| cd03234 | 226 | cd03234, ABCG_White, White pigment protein homolog | 4e-09 | |
| cd03220 | 224 | cd03220, ABC_KpsT_Wzt, ATP-binding cassette compon | 4e-09 | |
| TIGR03719 | 552 | TIGR03719, ABC_ABC_ChvD, ATP-binding cassette prot | 4e-09 | |
| PRK13645 | 289 | PRK13645, cbiO, cobalt transporter ATP-binding sub | 4e-09 | |
| pfam00664 | 274 | pfam00664, ABC_membrane, ABC transporter transmemb | 5e-09 | |
| cd03231 | 201 | cd03231, ABC_CcmA_heme_exporter, Cytochrome c biog | 5e-09 | |
| PRK13648 | 269 | PRK13648, cbiO, cobalt transporter ATP-binding sub | 5e-09 | |
| cd03268 | 208 | cd03268, ABC_BcrA_bacitracin_resist, ATP-binding c | 6e-09 | |
| PRK14248 | 268 | PRK14248, PRK14248, phosphate ABC transporter ATP- | 6e-09 | |
| COG1129 | 500 | COG1129, MglA, ABC-type sugar transport system, AT | 7e-09 | |
| PRK14240 | 250 | PRK14240, PRK14240, phosphate transporter ATP-bind | 7e-09 | |
| PRK14267 | 253 | PRK14267, PRK14267, phosphate ABC transporter ATP- | 8e-09 | |
| PRK10070 | 400 | PRK10070, PRK10070, glycine betaine transporter AT | 8e-09 | |
| TIGR00968 | 237 | TIGR00968, 3a0106s01, sulfate ABC transporter, ATP | 1e-08 | |
| COG0410 | 237 | COG0410, LivF, ABC-type branched-chain amino acid | 1e-08 | |
| COG4608 | 268 | COG4608, AppF, ABC-type oligopeptide transport sys | 1e-08 | |
| PRK14254 | 285 | PRK14254, PRK14254, phosphate ABC transporter ATP- | 1e-08 | |
| PRK13636 | 283 | PRK13636, cbiO, cobalt transporter ATP-binding sub | 1e-08 | |
| PRK14270 | 251 | PRK14270, PRK14270, phosphate ABC transporter ATP- | 1e-08 | |
| COG1127 | 263 | COG1127, Ttg2A, ABC-type transport system involved | 2e-08 | |
| PRK13648 | 269 | PRK13648, cbiO, cobalt transporter ATP-binding sub | 2e-08 | |
| TIGR02211 | 221 | TIGR02211, LolD_lipo_ex, lipoprotein releasing sys | 2e-08 | |
| cd03219 | 236 | cd03219, ABC_Mj1267_LivG_branched, ATP-binding cas | 2e-08 | |
| COG4181 | 228 | COG4181, COG4181, Predicted ABC-type transport sys | 2e-08 | |
| COG1137 | 243 | COG1137, YhbG, ABC-type (unclassified) transport s | 3e-08 | |
| COG0488 | 530 | COG0488, Uup, ATPase components of ABC transporter | 3e-08 | |
| COG1126 | 240 | COG1126, GlnQ, ABC-type polar amino acid transport | 3e-08 | |
| COG1117 | 253 | COG1117, PstB, ABC-type phosphate transport system | 3e-08 | |
| cd03219 | 236 | cd03219, ABC_Mj1267_LivG_branched, ATP-binding cas | 3e-08 | |
| TIGR03740 | 223 | TIGR03740, galliderm_ABC, gallidermin-class lantib | 3e-08 | |
| PRK14266 | 250 | PRK14266, PRK14266, phosphate ABC transporter ATP- | 3e-08 | |
| COG4618 | 580 | COG4618, ArpD, ABC-type protease/lipase transport | 4e-08 | |
| COG1136 | 226 | COG1136, SalX, ABC-type antimicrobial peptide tran | 4e-08 | |
| PRK11432 | 351 | PRK11432, fbpC, ferric transporter ATP-binding sub | 4e-08 | |
| PRK10619 | 257 | PRK10619, PRK10619, histidine/lysine/arginine/orni | 4e-08 | |
| PRK15439 | 510 | PRK15439, PRK15439, autoinducer 2 ABC transporter | 4e-08 | |
| PRK11264 | 250 | PRK11264, PRK11264, putative amino-acid ABC transp | 4e-08 | |
| COG1129 | 500 | COG1129, MglA, ABC-type sugar transport system, AT | 5e-08 | |
| cd03224 | 222 | cd03224, ABC_TM1139_LivF_branched, ATP-binding cas | 6e-08 | |
| COG4133 | 209 | COG4133, CcmA, ABC-type transport system involved | 6e-08 | |
| PRK13646 | 286 | PRK13646, cbiO, cobalt transporter ATP-binding sub | 6e-08 | |
| PRK13635 | 279 | PRK13635, cbiO, cobalt transporter ATP-binding sub | 7e-08 | |
| COG4133 | 209 | COG4133, CcmA, ABC-type transport system involved | 7e-08 | |
| PRK14253 | 249 | PRK14253, PRK14253, phosphate ABC transporter ATP- | 7e-08 | |
| COG4604 | 252 | COG4604, CeuD, ABC-type enterochelin transport sys | 7e-08 | |
| PRK13536 | 340 | PRK13536, PRK13536, nodulation factor exporter sub | 7e-08 | |
| PRK13650 | 279 | PRK13650, cbiO, cobalt transporter ATP-binding sub | 8e-08 | |
| cd03213 | 194 | cd03213, ABCG_EPDR, Eye pigment and drug resistanc | 8e-08 | |
| COG1116 | 248 | COG1116, TauB, ABC-type nitrate/sulfonate/bicarbon | 1e-07 | |
| COG4175 | 386 | COG4175, ProV, ABC-type proline/glycine betaine tr | 1e-07 | |
| cd03213 | 194 | cd03213, ABCG_EPDR, Eye pigment and drug resistanc | 1e-07 | |
| COG4172 | 534 | COG4172, COG4172, ABC-type uncharacterized transpo | 1e-07 | |
| PRK14252 | 265 | PRK14252, PRK14252, phosphate ABC transporter ATP- | 1e-07 | |
| cd03265 | 220 | cd03265, ABC_DrrA, Daunorubicin/doxorubicin resist | 1e-07 | |
| PRK09544 | 251 | PRK09544, znuC, high-affinity zinc transporter ATP | 1e-07 | |
| PRK10744 | 260 | PRK10744, pstB, phosphate transporter ATP-binding | 1e-07 | |
| PRK14255 | 252 | PRK14255, PRK14255, phosphate ABC transporter ATP- | 1e-07 | |
| cd03221 | 144 | cd03221, ABCF_EF-3, ATP-binding cassette domain of | 1e-07 | |
| PRK14238 | 271 | PRK14238, PRK14238, phosphate transporter ATP-bind | 1e-07 | |
| cd03293 | 220 | cd03293, ABC_NrtD_SsuB_transporters, ATP-binding c | 2e-07 | |
| TIGR01186 | 363 | TIGR01186, proV, glycine betaine/L-proline transpo | 2e-07 | |
| TIGR02673 | 214 | TIGR02673, FtsE, cell division ATP-binding protein | 2e-07 | |
| PRK14262 | 250 | PRK14262, PRK14262, phosphate ABC transporter ATP- | 2e-07 | |
| PRK14254 | 285 | PRK14254, PRK14254, phosphate ABC transporter ATP- | 2e-07 | |
| PRK14242 | 253 | PRK14242, PRK14242, phosphate transporter ATP-bind | 2e-07 | |
| PRK10895 | 241 | PRK10895, PRK10895, lipopolysaccharide ABC transpo | 2e-07 | |
| TIGR03005 | 252 | TIGR03005, ectoine_ehuA, ectoine/hydroxyectoine AB | 2e-07 | |
| PRK14271 | 276 | PRK14271, PRK14271, phosphate ABC transporter ATP- | 2e-07 | |
| PRK10247 | 225 | PRK10247, PRK10247, putative ABC transporter ATP-b | 2e-07 | |
| PRK14237 | 267 | PRK14237, PRK14237, phosphate transporter ATP-bind | 2e-07 | |
| PRK13643 | 288 | PRK13643, cbiO, cobalt transporter ATP-binding sub | 2e-07 | |
| PRK14269 | 246 | PRK14269, PRK14269, phosphate ABC transporter ATP- | 2e-07 | |
| cd03250 | 204 | cd03250, ABCC_MRP_domain1, ATP-binding cassette do | 3e-07 | |
| COG3842 | 352 | COG3842, PotA, ABC-type spermidine/putrescine tran | 3e-07 | |
| cd03297 | 214 | cd03297, ABC_ModC_molybdenum_transporter, ATP-bind | 3e-07 | |
| cd03223 | 166 | cd03223, ABCD_peroxisomal_ALDP, ATP-binding casset | 3e-07 | |
| PRK09536 | 402 | PRK09536, btuD, corrinoid ABC transporter ATPase; | 3e-07 | |
| TIGR03864 | 236 | TIGR03864, PQQ_ABC_ATP, ABC transporter, ATP-bindi | 3e-07 | |
| cd03218 | 232 | cd03218, ABC_YhbG, ATP-binding cassette component | 3e-07 | |
| TIGR02142 | 354 | TIGR02142, modC_ABC, molybdenum ABC transporter, A | 3e-07 | |
| PRK14270 | 251 | PRK14270, PRK14270, phosphate ABC transporter ATP- | 3e-07 | |
| PRK14253 | 249 | PRK14253, PRK14253, phosphate ABC transporter ATP- | 3e-07 | |
| COG0444 | 316 | COG0444, DppD, ABC-type dipeptide/oligopeptide/nic | 3e-07 | |
| PRK14245 | 250 | PRK14245, PRK14245, phosphate ABC transporter ATP- | 3e-07 | |
| PRK11607 | 377 | PRK11607, potG, putrescine transporter ATP-binding | 3e-07 | |
| COG0444 | 316 | COG0444, DppD, ABC-type dipeptide/oligopeptide/nic | 4e-07 | |
| TIGR02314 | 343 | TIGR02314, ABC_MetN, D-methionine ABC transporter, | 4e-07 | |
| COG4172 | 534 | COG4172, COG4172, ABC-type uncharacterized transpo | 5e-07 | |
| TIGR02314 | 343 | TIGR02314, ABC_MetN, D-methionine ABC transporter, | 5e-07 | |
| TIGR02324 | 224 | TIGR02324, CP_lyasePhnL, phosphonate C-P lyase sys | 5e-07 | |
| COG4559 | 259 | COG4559, COG4559, ABC-type hemin transport system, | 5e-07 | |
| PRK14239 | 252 | PRK14239, PRK14239, phosphate transporter ATP-bind | 5e-07 | |
| PRK10070 | 400 | PRK10070, PRK10070, glycine betaine transporter AT | 6e-07 | |
| PRK14255 | 252 | PRK14255, PRK14255, phosphate ABC transporter ATP- | 6e-07 | |
| COG4167 | 267 | COG4167, SapF, ABC-type antimicrobial peptide tran | 7e-07 | |
| PRK09493 | 240 | PRK09493, glnQ, glutamine ABC transporter ATP-bind | 7e-07 | |
| COG4161 | 242 | COG4161, ArtP, ABC-type arginine transport system, | 8e-07 | |
| PRK14264 | 305 | PRK14264, PRK14264, phosphate ABC transporter ATP- | 8e-07 | |
| TIGR01188 | 302 | TIGR01188, drrA, daunorubicin resistance ABC trans | 9e-07 | |
| PRK13549 | 506 | PRK13549, PRK13549, xylose transporter ATP-binding | 9e-07 | |
| COG2884 | 223 | COG2884, FtsE, Predicted ATPase involved in cell d | 1e-06 | |
| PRK09700 | 510 | PRK09700, PRK09700, D-allose transporter ATP-bindi | 1e-06 | |
| PRK13539 | 207 | PRK13539, PRK13539, cytochrome c biogenesis protei | 1e-06 | |
| PRK14267 | 253 | PRK14267, PRK14267, phosphate ABC transporter ATP- | 1e-06 | |
| PRK10762 | 501 | PRK10762, PRK10762, D-ribose transporter ATP bindi | 1e-06 | |
| PRK11231 | 255 | PRK11231, fecE, iron-dicitrate transporter ATP-bin | 1e-06 | |
| cd03217 | 200 | cd03217, ABC_FeS_Assembly, ABC-type transport syst | 1e-06 | |
| TIGR02323 | 253 | TIGR02323, CP_lyasePhnK, phosphonate C-P lyase sys | 1e-06 | |
| COG0411 | 250 | COG0411, LivG, ABC-type branched-chain amino acid | 1e-06 | |
| PRK14236 | 272 | PRK14236, PRK14236, phosphate transporter ATP-bind | 1e-06 | |
| PRK14251 | 251 | PRK14251, PRK14251, phosphate ABC transporter ATP- | 1e-06 | |
| PRK15112 | 267 | PRK15112, PRK15112, antimicrobial peptide ABC syst | 1e-06 | |
| PRK13634 | 290 | PRK13634, cbiO, cobalt transporter ATP-binding sub | 1e-06 | |
| COG1101 | 263 | COG1101, PhnK, ABC-type uncharacterized transport | 1e-06 | |
| PRK10982 | 491 | PRK10982, PRK10982, galactose/methyl galaxtoside t | 1e-06 | |
| COG4555 | 245 | COG4555, NatA, ABC-type Na+ transport system, ATPa | 2e-06 | |
| PRK13637 | 287 | PRK13637, cbiO, cobalt transporter ATP-binding sub | 2e-06 | |
| cd03234 | 226 | cd03234, ABCG_White, White pigment protein homolog | 2e-06 | |
| cd03231 | 201 | cd03231, ABC_CcmA_heme_exporter, Cytochrome c biog | 2e-06 | |
| cd03268 | 208 | cd03268, ABC_BcrA_bacitracin_resist, ATP-binding c | 2e-06 | |
| PRK14273 | 254 | PRK14273, PRK14273, phosphate ABC transporter ATP- | 2e-06 | |
| cd03266 | 218 | cd03266, ABC_NatA_sodium_exporter, ATP-binding cas | 2e-06 | |
| COG1134 | 249 | COG1134, TagH, ABC-type polysaccharide/polyol phos | 2e-06 | |
| PRK11144 | 352 | PRK11144, modC, molybdate transporter ATP-binding | 2e-06 | |
| PRK14261 | 253 | PRK14261, PRK14261, phosphate ABC transporter ATP- | 2e-06 | |
| COG4152 | 300 | COG4152, COG4152, ABC-type uncharacterized transpo | 2e-06 | |
| TIGR02633 | 500 | TIGR02633, xylG, D-xylose ABC transporter, ATP-bin | 2e-06 | |
| TIGR03873 | 256 | TIGR03873, F420-0_ABC_ATP, proposed F420-0 ABC tra | 2e-06 | |
| cd03292 | 214 | cd03292, ABC_FtsE_transporter, ATP-binding cassett | 3e-06 | |
| TIGR03740 | 223 | TIGR03740, galliderm_ABC, gallidermin-class lantib | 3e-06 | |
| PRK10619 | 257 | PRK10619, PRK10619, histidine/lysine/arginine/orni | 3e-06 | |
| PRK13643 | 288 | PRK13643, cbiO, cobalt transporter ATP-binding sub | 3e-06 | |
| TIGR01188 | 302 | TIGR01188, drrA, daunorubicin resistance ABC trans | 3e-06 | |
| cd03269 | 210 | cd03269, ABC_putative_ATPase, ATP-binding cassette | 3e-06 | |
| PRK11153 | 343 | PRK11153, metN, DL-methionine transporter ATP-bind | 3e-06 | |
| TIGR03771 | 223 | TIGR03771, anch_rpt_ABC, anchored repeat-type ABC | 3e-06 | |
| PRK09984 | 262 | PRK09984, PRK09984, phosphonate/organophosphate es | 3e-06 | |
| COG3840 | 231 | COG3840, ThiQ, ABC-type thiamine transport system, | 4e-06 | |
| COG4178 | 604 | COG4178, COG4178, ABC-type uncharacterized transpo | 4e-06 | |
| PRK13636 | 283 | PRK13636, cbiO, cobalt transporter ATP-binding sub | 4e-06 | |
| TIGR01257 | 2272 | TIGR01257, rim_protein, retinal-specific rim ABC t | 4e-06 | |
| PRK14274 | 259 | PRK14274, PRK14274, phosphate ABC transporter ATP- | 4e-06 | |
| PRK10522 | 547 | PRK10522, PRK10522, multidrug transporter membrane | 4e-06 | |
| TIGR01189 | 198 | TIGR01189, ccmA, heme ABC exporter, ATP-binding pr | 5e-06 | |
| PRK13640 | 282 | PRK13640, cbiO, cobalt transporter ATP-binding sub | 5e-06 | |
| PRK10895 | 241 | PRK10895, PRK10895, lipopolysaccharide ABC transpo | 5e-06 | |
| COG4559 | 259 | COG4559, COG4559, ABC-type hemin transport system, | 5e-06 | |
| PRK13634 | 290 | PRK13634, cbiO, cobalt transporter ATP-binding sub | 5e-06 | |
| PRK14265 | 274 | PRK14265, PRK14265, phosphate ABC transporter ATP- | 5e-06 | |
| TIGR00954 | 659 | TIGR00954, 3a01203, Peroxysomal Fatty Acyl CoA Tra | 5e-06 | |
| PRK10908 | 222 | PRK10908, PRK10908, cell division protein FtsE; Pr | 5e-06 | |
| PRK14260 | 259 | PRK14260, PRK14260, phosphate ABC transporter ATP- | 5e-06 | |
| PRK14247 | 250 | PRK14247, PRK14247, phosphate ABC transporter ATP- | 6e-06 | |
| PRK13642 | 277 | PRK13642, cbiO, cobalt transporter ATP-binding sub | 6e-06 | |
| cd03266 | 218 | cd03266, ABC_NatA_sodium_exporter, ATP-binding cas | 6e-06 | |
| PRK13633 | 280 | PRK13633, PRK13633, cobalt transporter ATP-binding | 6e-06 | |
| PRK11831 | 269 | PRK11831, PRK11831, putative ABC transporter ATP-b | 6e-06 | |
| TIGR00955 | 617 | TIGR00955, 3a01204, The Eye Pigment Precursor Tran | 6e-06 | |
| TIGR03258 | 362 | TIGR03258, PhnT, 2-aminoethylphosphonate ABC trans | 7e-06 | |
| PRK14266 | 250 | PRK14266, PRK14266, phosphate ABC transporter ATP- | 7e-06 | |
| cd03265 | 220 | cd03265, ABC_DrrA, Daunorubicin/doxorubicin resist | 7e-06 | |
| COG1101 | 263 | COG1101, PhnK, ABC-type uncharacterized transport | 7e-06 | |
| COG4778 | 235 | COG4778, PhnL, ABC-type phosphonate transport syst | 7e-06 | |
| PRK10247 | 225 | PRK10247, PRK10247, putative ABC transporter ATP-b | 8e-06 | |
| PRK14269 | 246 | PRK14269, PRK14269, phosphate ABC transporter ATP- | 8e-06 | |
| PRK14264 | 305 | PRK14264, PRK14264, phosphate ABC transporter ATP- | 8e-06 | |
| PRK11819 | 556 | PRK11819, PRK11819, putative ABC transporter ATP-b | 8e-06 | |
| TIGR01288 | 303 | TIGR01288, nodI, ATP-binding ABC transporter famil | 8e-06 | |
| PRK14242 | 253 | PRK14242, PRK14242, phosphate transporter ATP-bind | 9e-06 | |
| TIGR02769 | 265 | TIGR02769, nickel_nikE, nickel import ATP-binding | 9e-06 | |
| TIGR03608 | 206 | TIGR03608, L_ocin_972_ABC, putative bacteriocin ex | 1e-05 | |
| TIGR03410 | 230 | TIGR03410, urea_trans_UrtE, urea ABC transporter, | 1e-05 | |
| PRK13644 | 274 | PRK13644, cbiO, cobalt transporter ATP-binding sub | 1e-05 | |
| cd03300 | 232 | cd03300, ABC_PotA_N, ATP-binding cassette domain o | 1e-05 | |
| PRK14240 | 250 | PRK14240, PRK14240, phosphate transporter ATP-bind | 1e-05 | |
| PRK14239 | 252 | PRK14239, PRK14239, phosphate transporter ATP-bind | 1e-05 | |
| PRK14257 | 329 | PRK14257, PRK14257, phosphate ABC transporter ATP- | 1e-05 | |
| PRK11288 | 501 | PRK11288, araG, L-arabinose transporter ATP-bindin | 1e-05 | |
| PRK14249 | 251 | PRK14249, PRK14249, phosphate ABC transporter ATP- | 1e-05 | |
| PRK13649 | 280 | PRK13649, cbiO, cobalt transporter ATP-binding sub | 1e-05 | |
| cd03296 | 239 | cd03296, ABC_CysA_sulfate_importer, ATP-binding ca | 2e-05 | |
| PRK13639 | 275 | PRK13639, cbiO, cobalt transporter ATP-binding sub | 2e-05 | |
| PRK14259 | 269 | PRK14259, PRK14259, phosphate ABC transporter ATP- | 2e-05 | |
| PRK10261 | 623 | PRK10261, PRK10261, glutathione transporter ATP-bi | 2e-05 | |
| cd03216 | 163 | cd03216, ABC_Carb_Monos_I, First domain of the ATP | 3e-05 | |
| COG3845 | 501 | COG3845, COG3845, ABC-type uncharacterized transpo | 3e-05 | |
| TIGR02211 | 221 | TIGR02211, LolD_lipo_ex, lipoprotein releasing sys | 3e-05 | |
| PRK14238 | 271 | PRK14238, PRK14238, phosphate transporter ATP-bind | 3e-05 | |
| PRK11231 | 255 | PRK11231, fecE, iron-dicitrate transporter ATP-bin | 3e-05 | |
| COG1134 | 249 | COG1134, TagH, ABC-type polysaccharide/polyol phos | 3e-05 | |
| PRK14243 | 264 | PRK14243, PRK14243, phosphate transporter ATP-bind | 3e-05 | |
| PRK14268 | 258 | PRK14268, PRK14268, phosphate ABC transporter ATP- | 3e-05 | |
| PRK14258 | 261 | PRK14258, PRK14258, phosphate ABC transporter ATP- | 3e-05 | |
| PRK14258 | 261 | PRK14258, PRK14258, phosphate ABC transporter ATP- | 3e-05 | |
| PRK14275 | 286 | PRK14275, PRK14275, phosphate ABC transporter ATP- | 3e-05 | |
| cd03226 | 205 | cd03226, ABC_cobalt_CbiO_domain2, Second domain of | 4e-05 | |
| PRK14249 | 251 | PRK14249, PRK14249, phosphate ABC transporter ATP- | 4e-05 | |
| TIGR03269 | 520 | TIGR03269, met_CoM_red_A2, methyl coenzyme M reduc | 4e-05 | |
| PRK14263 | 261 | PRK14263, PRK14263, phosphate ABC transporter ATP- | 4e-05 | |
| PRK13641 | 287 | PRK13641, cbiO, cobalt transporter ATP-binding sub | 5e-05 | |
| PRK14235 | 267 | PRK14235, PRK14235, phosphate transporter ATP-bind | 5e-05 | |
| PRK10584 | 228 | PRK10584, PRK10584, putative ABC transporter ATP-b | 5e-05 | |
| TIGR02770 | 230 | TIGR02770, nickel_nikD, nickel import ATP-binding | 5e-05 | |
| COG4586 | 325 | COG4586, COG4586, ABC-type uncharacterized transpo | 5e-05 | |
| TIGR03265 | 353 | TIGR03265, PhnT2, putative 2-aminoethylphosphonate | 6e-05 | |
| PRK10744 | 260 | PRK10744, pstB, phosphate transporter ATP-binding | 6e-05 | |
| PRK14273 | 254 | PRK14273, PRK14273, phosphate ABC transporter ATP- | 6e-05 | |
| PRK13633 | 280 | PRK13633, PRK13633, cobalt transporter ATP-binding | 6e-05 | |
| TIGR02769 | 265 | TIGR02769, nickel_nikE, nickel import ATP-binding | 6e-05 | |
| COG4674 | 249 | COG4674, COG4674, Uncharacterized ABC-type transpo | 6e-05 | |
| COG4138 | 248 | COG4138, BtuD, ABC-type cobalamin transport system | 6e-05 | |
| cd03220 | 224 | cd03220, ABC_KpsT_Wzt, ATP-binding cassette compon | 7e-05 | |
| PRK10418 | 254 | PRK10418, nikD, nickel transporter ATP-binding pro | 7e-05 | |
| PRK13538 | 204 | PRK13538, PRK13538, cytochrome c biogenesis protei | 7e-05 | |
| PRK14256 | 252 | PRK14256, PRK14256, phosphate ABC transporter ATP- | 7e-05 | |
| PRK14245 | 250 | PRK14245, PRK14245, phosphate ABC transporter ATP- | 8e-05 | |
| PRK14237 | 267 | PRK14237, PRK14237, phosphate transporter ATP-bind | 9e-05 | |
| PRK11650 | 356 | PRK11650, ugpC, glycerol-3-phosphate transporter A | 9e-05 | |
| PTZ00265 | 1466 | PTZ00265, PTZ00265, multidrug resistance protein ( | 1e-04 | |
| PRK13652 | 277 | PRK13652, cbiO, cobalt transporter ATP-binding sub | 1e-04 | |
| PRK13646 | 286 | PRK13646, cbiO, cobalt transporter ATP-binding sub | 1e-04 | |
| TIGR01257 | 2272 | TIGR01257, rim_protein, retinal-specific rim ABC t | 1e-04 | |
| PRK14260 | 259 | PRK14260, PRK14260, phosphate ABC transporter ATP- | 1e-04 | |
| TIGR02770 | 230 | TIGR02770, nickel_nikD, nickel import ATP-binding | 1e-04 | |
| COG4674 | 249 | COG4674, COG4674, Uncharacterized ABC-type transpo | 1e-04 | |
| COG4107 | 258 | COG4107, PhnK, ABC-type phosphonate transport syst | 1e-04 | |
| COG4598 | 256 | COG4598, HisP, ABC-type histidine transport system | 1e-04 | |
| PRK15064 | 530 | PRK15064, PRK15064, ABC transporter ATP-binding pr | 1e-04 | |
| PRK13548 | 258 | PRK13548, hmuV, hemin importer ATP-binding subunit | 1e-04 | |
| PRK00635 | 1809 | PRK00635, PRK00635, excinuclease ABC subunit A; Pr | 1e-04 | |
| PRK15134 | 529 | PRK15134, PRK15134, microcin C ABC transporter ATP | 1e-04 | |
| PRK15439 | 510 | PRK15439, PRK15439, autoinducer 2 ABC transporter | 2e-04 | |
| COG4161 | 242 | COG4161, ArtP, ABC-type arginine transport system, | 2e-04 | |
| PRK13649 | 280 | PRK13649, cbiO, cobalt transporter ATP-binding sub | 2e-04 | |
| PRK14275 | 286 | PRK14275, PRK14275, phosphate ABC transporter ATP- | 2e-04 | |
| COG4598 | 256 | COG4598, HisP, ABC-type histidine transport system | 2e-04 | |
| PRK14244 | 251 | PRK14244, PRK14244, phosphate ABC transporter ATP- | 2e-04 | |
| PRK14244 | 251 | PRK14244, PRK14244, phosphate ABC transporter ATP- | 2e-04 | |
| cd03236 | 255 | cd03236, ABC_RNaseL_inhibitor_domain1, The ATP-bin | 2e-04 | |
| TIGR03522 | 301 | TIGR03522, GldA_ABC_ATP, gliding motility-associat | 2e-04 | |
| PRK13638 | 271 | PRK13638, cbiO, cobalt transporter ATP-binding sub | 2e-04 | |
| COG4136 | 213 | COG4136, COG4136, ABC-type uncharacterized transpo | 2e-04 | |
| cd03298 | 211 | cd03298, ABC_ThiQ_thiamine_transporter, ATP-bindin | 3e-04 | |
| PTZ00265 | 1466 | PTZ00265, PTZ00265, multidrug resistance protein ( | 3e-04 | |
| TIGR01184 | 230 | TIGR01184, ntrCD, nitrate transport ATP-binding su | 3e-04 | |
| COG4181 | 228 | COG4181, COG4181, Predicted ABC-type transport sys | 3e-04 | |
| smart00382 | 148 | smart00382, AAA, ATPases associated with a variety | 3e-04 | |
| TIGR03411 | 242 | TIGR03411, urea_trans_UrtD, urea ABC transporter, | 3e-04 | |
| cd03267 | 236 | cd03267, ABC_NatA_like, ATP-binding cassette domai | 3e-04 | |
| TIGR03005 | 252 | TIGR03005, ectoine_ehuA, ectoine/hydroxyectoine AB | 4e-04 | |
| COG0411 | 250 | COG0411, LivG, ABC-type branched-chain amino acid | 4e-04 | |
| PRK14261 | 253 | PRK14261, PRK14261, phosphate ABC transporter ATP- | 4e-04 | |
| cd03269 | 210 | cd03269, ABC_putative_ATPase, ATP-binding cassette | 4e-04 | |
| PRK10762 | 501 | PRK10762, PRK10762, D-ribose transporter ATP bindi | 5e-04 | |
| PRK14251 | 251 | PRK14251, PRK14251, phosphate ABC transporter ATP- | 5e-04 | |
| PLN03211 | 659 | PLN03211, PLN03211, ABC transporter G-25; Provisio | 5e-04 | |
| cd03222 | 177 | cd03222, ABC_RNaseL_inhibitor, ATP-binding cassett | 5e-04 | |
| cd03238 | 176 | cd03238, ABC_UvrA, ATP-binding cassette domain of | 5e-04 | |
| PRK14265 | 274 | PRK14265, PRK14265, phosphate ABC transporter ATP- | 6e-04 | |
| PRK14263 | 261 | PRK14263, PRK14263, phosphate ABC transporter ATP- | 6e-04 | |
| COG0488 | 530 | COG0488, Uup, ATPase components of ABC transporter | 7e-04 | |
| COG4615 | 546 | COG4615, PvdE, ABC-type siderophore export system, | 7e-04 | |
| cd03237 | 246 | cd03237, ABC_RNaseL_inhibitor_domain2, The ATP-bin | 8e-04 | |
| COG1245 | 591 | COG1245, COG1245, Predicted ATPase, RNase L inhibi | 8e-04 | |
| COG4525 | 259 | COG4525, TauB, ABC-type taurine transport system, | 0.001 | |
| PRK14271 | 276 | PRK14271, PRK14271, phosphate ABC transporter ATP- | 0.001 | |
| COG4167 | 267 | COG4167, SapF, ABC-type antimicrobial peptide tran | 0.001 | |
| PRK09493 | 240 | PRK09493, glnQ, glutamine ABC transporter ATP-bind | 0.001 | |
| cd03217 | 200 | cd03217, ABC_FeS_Assembly, ABC-type transport syst | 0.001 | |
| PRK11153 | 343 | PRK11153, metN, DL-methionine transporter ATP-bind | 0.001 | |
| PRK14257 | 329 | PRK14257, PRK14257, phosphate ABC transporter ATP- | 0.001 | |
| smart00382 | 148 | smart00382, AAA, ATPases associated with a variety | 0.001 | |
| COG1245 | 591 | COG1245, COG1245, Predicted ATPase, RNase L inhibi | 0.001 | |
| COG2401 | 593 | COG2401, COG2401, ABC-type ATPase fused to a predi | 0.001 | |
| PRK14272 | 252 | PRK14272, PRK14272, phosphate ABC transporter ATP- | 0.001 | |
| PRK14272 | 252 | PRK14272, PRK14272, phosphate ABC transporter ATP- | 0.001 | |
| COG0396 | 251 | COG0396, sufC, Cysteine desulfurase activator ATPa | 0.001 | |
| PRK13409 | 590 | PRK13409, PRK13409, putative ATPase RIL; Provision | 0.001 | |
| PLN03073 | 718 | PLN03073, PLN03073, ABC transporter F family; Prov | 0.001 | |
| PRK11124 | 242 | PRK11124, artP, arginine transporter ATP-binding s | 0.001 | |
| COG4148 | 352 | COG4148, ModC, ABC-type molybdate transport system | 0.002 | |
| TIGR02982 | 220 | TIGR02982, heterocyst_DevA, ABC exporter ATP-bindi | 0.002 | |
| PRK14246 | 257 | PRK14246, PRK14246, phosphate ABC transporter ATP- | 0.002 | |
| PRK13645 | 289 | PRK13645, cbiO, cobalt transporter ATP-binding sub | 0.002 | |
| COG4172 | 534 | COG4172, COG4172, ABC-type uncharacterized transpo | 0.002 | |
| PRK14235 | 267 | PRK14235, PRK14235, phosphate transporter ATP-bind | 0.002 | |
| TIGR03522 | 301 | TIGR03522, GldA_ABC_ATP, gliding motility-associat | 0.002 | |
| PRK14241 | 258 | PRK14241, PRK14241, phosphate transporter ATP-bind | 0.002 | |
| PRK11308 | 327 | PRK11308, dppF, dipeptide transporter ATP-binding | 0.002 | |
| PRK11308 | 327 | PRK11308, dppF, dipeptide transporter ATP-binding | 0.002 | |
| PRK13647 | 274 | PRK13647, cbiO, cobalt transporter ATP-binding sub | 0.003 | |
| COG4604 | 252 | COG4604, CeuD, ABC-type enterochelin transport sys | 0.003 | |
| PRK10982 | 491 | PRK10982, PRK10982, galactose/methyl galaxtoside t | 0.003 | |
| PRK10575 | 265 | PRK10575, PRK10575, iron-hydroxamate transporter A | 0.003 | |
| PRK10253 | 265 | PRK10253, PRK10253, iron-enterobactin transporter | 0.003 | |
| PRK14248 | 268 | PRK14248, PRK14248, phosphate ABC transporter ATP- | 0.004 | |
| PRK11607 | 377 | PRK11607, potG, putrescine transporter ATP-binding | 0.004 | |
| PRK14274 | 259 | PRK14274, PRK14274, phosphate ABC transporter ATP- | 0.004 | |
| PRK14259 | 269 | PRK14259, PRK14259, phosphate ABC transporter ATP- | 0.004 | |
| PRK13548 | 258 | PRK13548, hmuV, hemin importer ATP-binding subunit | 0.004 | |
| PRK11629 | 233 | PRK11629, lolD, lipoprotein transporter ATP-bindin | 0.004 | |
| pfam13191 | 154 | pfam13191, AAA_16, AAA ATPase domain | 0.004 | |
| PRK15079 | 331 | PRK15079, PRK15079, oligopeptide ABC transporter A | 0.004 |
| >gnl|CDD|188098 TIGR00957, MRP_assoc_pro, multi drug resistance-associated protein (MRP) | Back alignment and domain information |
|---|
Score = 663 bits (1712), Expect = 0.0
Identities = 402/1321 (30%), Positives = 639/1321 (48%), Gaps = 197/1321 (14%)
Query: 4 PYSNAGLFSIRSFSWMGSLIALGNKRTLDLEDVPRLDCSDSIYGVSPVL----------- 52
P S+A S +F W+ + G ++ L+ D+ L+ D+ V PVL
Sbjct: 203 PESSASFLSRITFWWITGMAVYGYRQPLEESDLWSLNKEDTSEMVVPVLVENWKKECKKT 262
Query: 53 ---------------QNKLEAVVGVANRLTAL-----------RLAKVLFFSAWQEILFI 86
+ K + + + AL L KVL+ + L
Sbjct: 263 RKQPVSAVYGKKDPSKPKGSSQLDANEEVEALIVKSPHKPRKPSLFKVLYKTFGPYFLMS 322
Query: 87 AILALLYTLATYVGPYLIDNFVQYLNGRQAFEYEGYVL--------CLSE---RHWFFQV 135
++ L ++GP ++ ++++N A +++GY CL +F
Sbjct: 323 FCFKAIHDLMMFIGPQILSLLIRFVNDPMAPDWQGYFYTGLLFVCACLQTLILHQYFHIC 382
Query: 136 QQFGIRFRATLFAMIYNKGLTLSGQAKQGNTSGEIINLIAVDAER--------------- 180
G+R + + +Y K L ++ A++ +T GEI+NL++VDA+R
Sbjct: 383 FVSGMRIKTAVMGAVYRKALVITNSARKSSTVGEIVNLMSVDAQRFMDLATYINMIWSAP 442
Query: 181 -----ALLILYKKLGLASIATLLATAIVMLANFPLGRLREKFQDKFMETKDRRIKATSEI 235
AL L+ LG + +A + +++ N + + +Q M++KD RIK +EI
Sbjct: 443 LQVILALYFLWLNLGPSVLAGVAVMVLMVPLNAVMAMKTKTYQVAHMKSKDNRIKLMNEI 502
Query: 236 LRNMRILKLQGWEL---------KKNETAWLKKSVYTEAMISFFCWGAPTFVSVVTFGSC 286
L +++LKL WEL ++ E LKKS Y A+ +F P V+++TF
Sbjct: 503 LNGIKVLKLYAWELAFLDKVEGIRQEELKVLKKSAYLHAVGTFTWVCTPFLVALITFA-- 560
Query: 287 ILLGIPLESGMILSA------LTTFKILQEPIYYLPESISMMIQAKVPLDRIASFLCLEG 340
+ + ++ IL A L F IL+ P+ LP IS ++QA V L R+ FL E
Sbjct: 561 --VYVTVDENNILDAEKAFVSLALFNILRFPLNILPMVISSIVQASVSLKRLRIFLSHEE 618
Query: 341 LQTDVLEKMP-RGNSDTAIEIIDGSFSWDFSSPNPTLRNINLKVFHGMRVAVCGTVGSGK 399
L+ D +E+ + +I + + +F+W P PTL I + G VAV G VG GK
Sbjct: 619 LEPDSIERRTIKPGEGNSITVHNATFTWARDLP-PTLNGITFSIPEGALVAVVGQVGCGK 677
Query: 400 SSCLSCILGGVPKESGIIRLCGTKAYVAQSPWIQSGKIEENILFGKEMDRERYERVLEAC 459
SS LS +L + K G + + G+ AYV Q WIQ+ + ENILFGK ++ + Y++VLEAC
Sbjct: 678 SSLLSALLAEMDKVEGHVHMKGSVAYVPQQAWIQNDSLRENILFGKALNEKYYQQVLEAC 737
Query: 460 SLKKDLEVLPFGDQTIIGERGINLSGGQKQRIQIARPLYQDADIFLLDDPFSPVDDHTGA 519
+L DLE+LP GD+T IGE+G+NLSGGQKQR+ +AR +Y +ADI+L DDP S VD H G
Sbjct: 738 ALLPDLEILPSGDRTEIGEKGVNLSGGQKQRVSLARAVYSNADIYLFDDPLSAVDAHVGK 797
Query: 520 HLFKFC----WVSSSKTVIYATHQVEFLPAADLILVIKDGKITQAGKYSDILNSGTDFME 575
H+F+ V +KT I TH + +LP D+I+V+ GKI++ G Y ++L F E
Sbjct: 798 HIFEHVIGPEGVLKNKTRILVTHGISYLPQVDVIIVMSGGKISEMGSYQELLQRDGAFAE 857
Query: 576 LVGAHKQALSGLDSIDRGPVSERKSINKE----NDGTSTTNEIVNKEENKNFQSDD---- 627
+ + D KE +G T ++V K+ + +
Sbjct: 858 FLRTYAPDEQQGHLEDSWTALVSGE-GKEAKLIENGMLVT-DVVGKQLQRQLSASSSDSG 915
Query: 628 ---------------EAALPKGQLVQEEEREKGKVGFSVYWKYMTTAYGGVLVPFILLAQ 672
EA +L++ ++ + G+V SVYW YM A G + +
Sbjct: 916 DQSRHHGSSAELQKAEAKEETWKLMEADKAQTGQVELSVYWDYM-KAIGLFITFLSIFLF 974
Query: 673 IIFQIFQIGSNYWM-AWA-----------TPVAKDVNPAVGASTLIIVYVGA------GY 714
+ + + SNYW+ W T + V A+G V+ + G
Sbjct: 975 VCNHVSALASNYWLSLWTDDPMVNGTQNNTSLRLSVYGALGILQGFAVFGYSMAVSIGGI 1034
Query: 715 KTATQLFNKMHVCIFRAPMYFFDSTPSGRILNRVSENVKWADQSAADMDIPYDIGAFAFS 774
+ + L + R+PM FF+ TPSG ++NR S+ + D IP I F S
Sbjct: 1035 QASRVLHQDLLHNKLRSPMSFFERTPSGNLVNRFSKELDTVDSM-----IPPVIKMFMGS 1089
Query: 775 MIQLLGIIVVMSLVAWQVLIVFVPVIATFIWYQQYYITSTRELSRLIGVCKAPVIQQFSE 834
+ ++G ++V+ L ++ P+ + + Q++Y+ S+R+L RL V ++PV F+E
Sbjct: 1090 LFNVIGALIVILLATPIAAVIIPPLGLLYFFVQRFYVASSRQLKRLESVSRSPVYSHFNE 1149
Query: 835 TISGSTTIRSLDQELRFRDTNMKLIDEYSRPKFHIAGAMEWLRFCIDMLSSITFAFSLAF 894
T+ G + IR+ +++ RF + +DE + + A WL ++ + + F+ F
Sbjct: 1150 TLLGVSVIRAFEEQERFIHQSDLKVDENQKAYYPSIVANRWLAVRLECVGNCIVLFAALF 1209
Query: 895 LI-------------SVP---------NGIIHPYKNLERKIISVERILQCACIPSEPALV 932
+ SV N ++ +E I++VER+ + + E
Sbjct: 1210 AVISRHSLSAGLVGLSVSYSLQVTFYLNWLVRMSSEMETNIVAVERLKEYSETEKEAPWQ 1269
Query: 933 IEATKPNNSRPSHGEVNIRHLQVRYAPNLPLVLR---------------GRTGSGKSTLI 977
I+ T P + P G V R+ +RY +L LVLR GRTG+GKS+L
Sbjct: 1270 IQETAPPSGWPPRGRVEFRNYCLRYREDLDLVLRHINVTIHGGEKVGIVGRTGAGKSSLT 1329
Query: 978 QTLFRIVESTAGHILIDGKDISLIGLHDLRTRLSIIPQDPTMFEGTTRSNLDPLEEHADE 1037
LFRI ES G I+IDG +I+ IGLHDLR +++IIPQDP +F G+ R NLDP +++DE
Sbjct: 1330 LGLFRINESAEGEIIIDGLNIAKIGLHDLRFKITIIPQDPVLFSGSLRMNLDPFSQYSDE 1389
Query: 1038 QIWEALDKCQLGDEVRKKKGKLDSQ------------------GRVLLKKSKVLVLDEAT 1079
++W AL+ L V KLD + R LL+K+K+LVLDEAT
Sbjct: 1390 EVWWALELAHLKTFVSALPDKLDHECAEGGENLSVGQRQLVCLARALLRKTKILVLDEAT 1449
Query: 1080 ASVDTATDNQIQQTLRQHFSDCTVVTIAHRITSVLDSAMVLLLNHGLIKEYDSPTKLLEN 1139
A+VD TDN IQ T+R F DCTV+TIAHR+ +++D V++L+ G + E+ +P+ LL+
Sbjct: 1450 AAVDLETDNLIQSTIRTQFEDCTVLTIAHRLNTIMDYTRVIVLDKGEVAEFGAPSNLLQQ 1509
Query: 1140 K 1140
+
Sbjct: 1510 R 1510
|
This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved [Transport and binding proteins, Other]. Length = 1522 |
| >gnl|CDD|215595 PLN03130, PLN03130, ABC transporter C family member; Provisional | Back alignment and domain information |
|---|
Score = 652 bits (1685), Expect = 0.0
Identities = 406/1301 (31%), Positives = 636/1301 (48%), Gaps = 190/1301 (14%)
Query: 2 VTPYSNAGLFSIRSFSWMGSLIALGNKRTLDLEDVPRLDCSDSIYGVSPVLQNKLEAVVG 61
+ P +A +FS F WM L+ LG KR L +DV +LD D + L +
Sbjct: 226 ICPERHANIFSRIFFGWMTPLMQLGYKRPLTEKDVWKLDTWDQ----TETLYRSFQKCWD 281
Query: 62 VANRLTALRLAKVLFFSAWQEILFIAILALLYTLATYVGPYLIDNFVQYLNGRQAFEYEG 121
+ L + L S + L+ +VGP L++ ++ + + + G
Sbjct: 282 EELKKPKPWLLRALNNSLGGRFWLGGFFKIGNDLSQFVGPLLLNLLLESMQNGEP-AWIG 340
Query: 122 Y-------------VLCLSERHWFFQVQQFGIRFRATLFAMIYNKGLTLSGQAKQGNTSG 168
Y VLC E +F V + G R R+TL A ++ K L L+ + ++ TSG
Sbjct: 341 YIYAFSIFVGVVLGVLC--EAQYFQNVMRVGFRLRSTLVAAVFRKSLRLTHEGRKKFTSG 398
Query: 169 EIINLIAVDAER--------------------ALLILYKKLGLASI-ATLLATAIVMLAN 207
+I NL+ DAE A+++LY++LG+AS+ +L+ + +
Sbjct: 399 KITNLMTTDAEALQQICQQLHTLWSAPFRIIIAMVLLYQQLGVASLIGSLMLVLMFPIQT 458
Query: 208 FPLGRLREKFQDKFMETKDRRIKATSEILRNMRILKLQGWE---------LKKNETAWLK 258
F + +++ K + ++ D+RI +E+L M +K WE ++ +E +W +
Sbjct: 459 FIISKMQ-KLTKEGLQRTDKRIGLMNEVLAAMDTVKCYAWENSFQSKVQTVRDDELSWFR 517
Query: 259 KSVYTEAMISFFCWGAPTFVSVVTFGSCILLGIPLESGMILSALTTFKILQEPIYYLPES 318
K+ A SF P V+VV+FG LLG L ++L+ F +L+ P++ LP
Sbjct: 518 KAQLLSAFNSFILNSIPVLVTVVSFGVFTLLGGDLTPARAFTSLSLFAVLRFPLFMLPNL 577
Query: 319 ISMMIQAKVPLDRIASFLCLEGLQTDVLEKMPRGNSDTAIEIIDGSFSWDFSSPNPTLRN 378
I+ + A V L R+ L E + +L P AI I +G FSWD + PTL N
Sbjct: 578 ITQAVNANVSLKRLEELLLAE--ERVLLPNPPLEPGLPAISIKNGYFSWDSKAERPTLSN 635
Query: 379 INLKVFHGMRVAVCGTVGSGKSSCLSCILGGVPKESG---IIRLCGTKAYVAQSPWIQSG 435
INL V G VA+ G+ G GK+S +S +LG +P S +IR GT AYV Q WI +
Sbjct: 636 INLDVPVGSLVAIVGSTGEGKTSLISAMLGELPPRSDASVVIR--GTVAYVPQVSWIFNA 693
Query: 436 KIEENILFGKEMDRERYERVLEACSLKKDLEVLPFGDQTIIGERGINLSGGQKQRIQIAR 495
+ +NILFG D ERYER ++ +L+ DL++LP GD T IGERG+N+SGGQKQR+ +AR
Sbjct: 694 TVRDNILFGSPFDPERYERAIDVTALQHDLDLLPGGDLTEIGERGVNISGGQKQRVSMAR 753
Query: 496 PLYQDADIFLLDDPFSPVDDHTGAHLFKFCWVS--SSKTVIYATHQVEFLPAADLILVIK 553
+Y ++D+++ DDP S +D H G +F C KT + T+Q+ FL D I+++
Sbjct: 754 AVYSNSDVYIFDDPLSALDAHVGRQVFDKCIKDELRGKTRVLVTNQLHFLSQVDRIILVH 813
Query: 554 DGKITQAGKYSDILNSGTDFMELVGAHKQALSGLDSIDRGPVSERKSINKENDGTSTTNE 613
+G I + G Y ++ N+G F +L+ + A + ++ +E D +++
Sbjct: 814 EGMIKEEGTYEELSNNGPLFQKLM---ENAGKMEEYVEEN--------GEEEDDQTSSKP 862
Query: 614 IVNKEEN---KNFQSDDEAALPKGQLVQEEEREKGKVGFSVYWKYMTTAYGGVLVPFIL- 669
+ N N K+ S ++ K L+++EERE G V + V +Y A GG V IL
Sbjct: 863 VANGNANNLKKDSSSKKKSKEGKSVLIKQEERETGVVSWKVLERY-KNALGGAWVVMILF 921
Query: 670 LAQIIFQIFQIGSNYWMA-WATPVAKDVNPAVGASTLIIVYVGAGY-------------- 714
L ++ ++F++ S+ W++ W + G ++Y +
Sbjct: 922 LCYVLTEVFRVSSSTWLSEWTDQGTPKTH---GPLFYNLIYALLSFGQVLVTLLNSYWLI 978
Query: 715 ----KTATQLFNKMHVCIFRAPMYFFDSTPSGRILNRVSENVKWADQSAADMDIPYDIGA 770
A +L + M I RAPM FF + P GRI+NR ++++ DI ++
Sbjct: 979 MSSLYAAKRLHDAMLGSILRAPMSFFHTNPLGRIINRFAKDLG---------DIDRNVAV 1029
Query: 771 FA----------FSMIQLLGIIVVMSLVAWQVLIVFVPVIATFIWYQQYYITSTRELSRL 820
F S L+GI+ +SL W ++ + V +++YQ ++ RE+ RL
Sbjct: 1030 FVNMFLGQIFQLLSTFVLIGIVSTISL--WAIMPLLVLFYGAYLYYQ----STAREVKRL 1083
Query: 821 IGVCKAPVIQQFSETISGSTTIRSLDQELRFRDTNMKLIDEYSRPKFHIAGAMEWLRFCI 880
+ ++PV QF E ++G +TIR+ R + N + +D R + WL +
Sbjct: 1084 DSITRSPVYAQFGEALNGLSTIRAYKAYDRMAEINGRSMDNNIRFTLVNMSSNRWLAIRL 1143
Query: 881 DMLSSI--------------------TFAFSLAFLISVPNGIIHPYKNL-------ERKI 913
+ L + FA ++ L+S I + E +
Sbjct: 1144 ETLGGLMIWLTASFAVMQNGRAENQAAFASTMGLLLSYALNITSLLTAVLRLASLAENSL 1203
Query: 914 ISVERILQCACIPSEPALVIEATKPNNSRPSHGEVNIRHLQVRYAPNLPLVLR------- 966
+VER+ +PSE LVIE +P PS G + + +RY P LP VL
Sbjct: 1204 NAVERVGTYIDLPSEAPLVIENNRPPPGWPSSGSIKFEDVVLRYRPELPPVLHGLSFEIS 1263
Query: 967 --------GRTGSGKSTLIQTLFRIVESTAGHILIDGKDISLIGLHDLRTRLSIIPQDPT 1018
GRTG+GKS+++ LFRIVE G ILIDG DIS GL DLR L IIPQ P
Sbjct: 1264 PSEKVGIVGRTGAGKSSMLNALFRIVELERGRILIDGCDISKFGLMDLRKVLGIIPQAPV 1323
Query: 1019 MFEGTTRSNLDPLEEHADEQIWEALDKCQLGDEVRKKKGKLD------------------ 1060
+F GT R NLDP EH D +WE+L++ L D +R+ LD
Sbjct: 1324 LFSGTVRFNLDPFNEHNDADLWESLERAHLKDVIRRNSLGLDAEVSEAGENFSVGQRQLL 1383
Query: 1061 SQGRVLLKKSKVLVLDEATASVDTATDNQIQQTLRQHFSDCTVVTIAHRITSVLDSAMVL 1120
S R LL++SK+LVLDEATA+VD TD IQ+T+R+ F CT++ IAHR+ +++D +L
Sbjct: 1384 SLARALLRRSKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIIDCDRIL 1443
Query: 1121 LLNHGLIKEYDSPTKLLENKSSSFAQLV-------AEYTSS 1154
+L+ G + E+D+P LL N+ S+F+++V A+Y S
Sbjct: 1444 VLDAGRVVEFDTPENLLSNEGSAFSKMVQSTGAANAQYLRS 1484
|
Length = 1622 |
| >gnl|CDD|215640 PLN03232, PLN03232, ABC transporter C family member; Provisional | Back alignment and domain information |
|---|
Score = 618 bits (1595), Expect = 0.0
Identities = 389/1273 (30%), Positives = 645/1273 (50%), Gaps = 156/1273 (12%)
Query: 2 VTPYSNAGLFSIRSFSWMGSLIALGNKRTLDLEDVPRLDCSDSIYGVSPVLQNKLEAVVG 61
+ P A +FS FSWM L+ LG ++ + +DV +LD D + L + +
Sbjct: 226 ICPERYASIFSRIYFSWMTPLMQLGYRKPITEKDVWQLDQWDQ----TETLIKRFQRCWT 281
Query: 62 VANRLTALRLAKVLFFSAWQEILFIAILALLYTLATYVGPYLIDNFVQYL-NGRQAFEYE 120
+R L + L S I + + L+ +VGP ++ + +Q + G A +
Sbjct: 282 EESRRPKPWLLRALNNSLGGRFWLGGIFKIGHDLSQFVGPVILSHLLQSMQEGDPA--WV 339
Query: 121 GYVLC-----------LSERHWFFQVQQFGIRFRATLFAMIYNKGLTLSGQAKQGNTSGE 169
GYV L E +F V + G R R+TL A I++K L L+ +A++ SG+
Sbjct: 340 GYVYAFLIFFGVTFGVLCESQYFQNVGRVGFRLRSTLVAAIFHKSLRLTHEARKNFASGK 399
Query: 170 IINLIAVDAER--------------------ALLILYKKLGLASI-ATLLATAIVMLANF 208
+ N+I DA ++++LY++LG+AS+ +L+ ++ L
Sbjct: 400 VTNMITTDANALQQIAEQLHGLWSAPFRIIVSMVLLYQQLGVASLFGSLILFLLIPLQTL 459
Query: 209 PLGRLREKFQDKFMETKDRRIKATSEILRNMRILKLQGWE---------LKKNETAWLKK 259
+ ++R K + ++ D+R+ +EIL +M +K WE ++ E +W +K
Sbjct: 460 IVRKMR-KLTKEGLQWTDKRVGIINEILASMDTVKCYAWEKSFESRIQGIRNEELSWFRK 518
Query: 260 SVYTEAMISFFCWGAPTFVSVVTFGSCILLGIPLESGMILSALTTFKILQEPIYYLPESI 319
+ A SF P V++V+FG +LLG L ++L+ F +L+ P+ LP +
Sbjct: 519 AQLLSAFNSFILNSIPVVVTLVSFGVFVLLGGDLTPARAFTSLSLFAVLRSPLNMLPNLL 578
Query: 320 SMMIQAKVPLDRIASFLCLEGLQTDVLEKMPRGNSDTAIEIIDGSFSWDFSSPNPTLRNI 379
S ++ A V L RI L E + + + P AI I +G FSWD + PTL +I
Sbjct: 579 SQVVNANVSLQRIEELLLSE--ERILAQNPPLQPGAPAISIKNGYFSWDSKTSKPTLSDI 636
Query: 380 NLKVFHGMRVAVCGTVGSGKSSCLSCILGGVPK-ESGIIRLCGTKAYVAQSPWIQSGKIE 438
NL++ G VA+ G G GK+S +S +LG + E+ + + G+ AYV Q WI + +
Sbjct: 637 NLEIPVGSLVAIVGGTGEGKTSLISAMLGELSHAETSSVVIRGSVAYVPQVSWIFNATVR 696
Query: 439 ENILFGKEMDRERYERVLEACSLKKDLEVLPFGDQTIIGERGINLSGGQKQRIQIARPLY 498
ENILFG + + ERY R ++ +L+ DL++LP D T IGERG+N+SGGQKQR+ +AR +Y
Sbjct: 697 ENILFGSDFESERYWRAIDVTALQHDLDLLPGRDLTEIGERGVNISGGQKQRVSMARAVY 756
Query: 499 QDADIFLLDDPFSPVDDHTGAHLFKFCWVSS--SKTVIYATHQVEFLPAADLILVIKDGK 556
++DI++ DDP S +D H +F C KT + T+Q+ FLP D I+++ +G
Sbjct: 757 SNSDIYIFDDPLSALDAHVAHQVFDSCMKDELKGKTRVLVTNQLHFLPLMDRIILVSEGM 816
Query: 557 ITQAGKYSDILNSGTDFMELVGAHKQALSGLDSIDRGPVSERKSINKENDGTSTTNEIVN 616
I + G ++++ SG+ F +L+ + G + + +N ++ V
Sbjct: 817 IKEEGTFAELSKSGSLFKKLME------------NAGKMDATQEVNTNDENILKLGPTVT 864
Query: 617 KE-ENKNFQSDDEAALPKGQLVQEEEREKGKVGFSVYWKYMTTAYGGVLVPFILLA-QII 674
+ +N S + + LV++EERE G + ++V +Y A GG+ V ILL +
Sbjct: 865 IDVSERNLGSTKQGKRGRSVLVKQEERETGIISWNVLMRY-NKAVGGLWVVMILLVCYLT 923
Query: 675 FQIFQIGSNYWMAWATPVAKDVNPAVGASTLIIVYVGAGYKTAT---------------- 718
++ ++ S+ W++ T + + + G ++ +G G T
Sbjct: 924 TEVLRVSSSTWLSIWTDQSTPKSYSPGFYIVVYALLGFGQVAVTFTNSFWLISSSLHAAK 983
Query: 719 QLFNKMHVCIFRAPMYFFDSTPSGRILNRVSENVKWADQSAAD-MDIPYDIGAFAFSMIQ 777
+L + M I RAPM FF + P+GR++NR S+++ D++ A+ M++ + S
Sbjct: 984 RLHDAMLNSILRAPMLFFHTNPTGRVINRFSKDIGDIDRNVANLMNMFMNQLWQLLSTFA 1043
Query: 778 LLGIIVVMSLVAWQVLIVFVPVIATFIWYQQYYITSTRELSRLIGVCKAPVIQQFSETIS 837
L+G + +SL W ++ + + A +++YQ +++RE+ RL V ++P+ QF E ++
Sbjct: 1044 LIGTVSTISL--WAIMPLLILFYAAYLYYQ----STSREVRRLDSVTRSPIYAQFGEALN 1097
Query: 838 GSTTIRSLDQELRFRDTNMKLIDEYSRPKFHIA----------------GAMEWLRFCID 881
G ++IR+ R N K +D R F +A G M WL
Sbjct: 1098 GLSSIRAYKAYDRMAKINGKSMDNNIR--FTLANTSSNRWLTIRLETLGGVMIWLTATFA 1155
Query: 882 ML------SSITFAFSLAFLIS-------VPNGIIHPYKNLERKIISVERILQCACIPSE 928
+L + FA ++ L+S + +G++ E + SVER+ +PSE
Sbjct: 1156 VLRNGNAENQAGFASTMGLLLSYTLNITTLLSGVLRQASKAENSLNSVERVGNYIDLPSE 1215
Query: 929 PALVIEATKPNNSRPSHGEVNIRHLQVRYAPNLPLVLR---------------GRTGSGK 973
+IE +P + PS G + + +RY P LP VL GRTG+GK
Sbjct: 1216 ATAIIENNRPVSGWPSRGSIKFEDVHLRYRPGLPPVLHGLSFFVSPSEKVGVVGRTGAGK 1275
Query: 974 STLIQTLFRIVESTAGHILIDGKDISLIGLHDLRTRLSIIPQDPTMFEGTTRSNLDPLEE 1033
S+++ LFRIVE G I+ID D++ GL DLR LSIIPQ P +F GT R N+DP E
Sbjct: 1276 SSMLNALFRIVELEKGRIMIDDCDVAKFGLTDLRRVLSIIPQSPVLFSGTVRFNIDPFSE 1335
Query: 1034 HADEQIWEALDKCQLGDEVRKKKGKLDSQ------------------GRVLLKKSKVLVL 1075
H D +WEAL++ + D + + LD++ R LL++SK+LVL
Sbjct: 1336 HNDADLWEALERAHIKDVIDRNPFGLDAEVSEGGENFSVGQRQLLSLARALLRRSKILVL 1395
Query: 1076 DEATASVDTATDNQIQQTLRQHFSDCTVVTIAHRITSVLDSAMVLLLNHGLIKEYDSPTK 1135
DEATASVD TD+ IQ+T+R+ F CT++ IAHR+ +++D +L+L+ G + EYDSP +
Sbjct: 1396 DEATASVDVRTDSLIQRTIREEFKSCTMLVIAHRLNTIIDCDKILVLSSGQVLEYDSPQE 1455
Query: 1136 LLENKSSSFAQLV 1148
LL +S+F ++V
Sbjct: 1456 LLSRDTSAFFRMV 1468
|
Length = 1495 |
| >gnl|CDD|240327 PTZ00243, PTZ00243, ABC transporter; Provisional | Back alignment and domain information |
|---|
Score = 455 bits (1173), Expect = e-138
Identities = 356/1345 (26%), Positives = 559/1345 (41%), Gaps = 298/1345 (22%)
Query: 69 LRLAKVLFFSAWQEILFIAILALLYTLATYVGPYLIDNFVQYLNGRQAFEYEGYVLCLS- 127
L L + LF + + + LL + T P L+ FV++L+ A G L L+
Sbjct: 232 LSLLRTLFAALPYYVWWQIPFKLLSDVCTLTLPVLLKYFVKFLDADNATWGRGLGLVLTL 291
Query: 128 ---------ERHWFFQVQ-QFGIRFRATLFAMIYNKGLTLSGQAKQG---NTSGEIINLI 174
H F+ + + G+++R+ L A+I+ K T+S ++ NT G IIN++
Sbjct: 292 FLTQLIQSVCLHRFYYISIRCGLQYRSALNALIFEKCFTISSKSLAQPDMNT-GRIINMM 350
Query: 175 AVDAERA--------------------LLILYKKLGLASIATLLATAIVMLANFPLG--- 211
+ D ER +L+L + +G ++ + V+L PL
Sbjct: 351 STDVERINSFMQYCMYLWSSPMVLLLSILLLSRLVGWCALMAV----AVLLVTLPLNGAI 406
Query: 212 -RLREKFQDKFMETKDRRIKATSEILRNMRILKLQGWE---------LKKNETAWLKKSV 261
+ + + K + D R+KAT+E +RI K WE + E +L+
Sbjct: 407 MKHQMAARRKIAKAADARVKATNEFFSGIRIAKFMAWEPCFVANIEDKRARELRYLRDVQ 466
Query: 262 YTEAMISFFCWGAPTFV----------------SVVTFGSCILLG--------IPLESGM 297
SF PT + V F + LLG IP
Sbjct: 467 LARVATSFVNNATPTLMIAVVFTVYYLLGHELTPEVVFPTIALLGVLRMPFFMIPWVFTT 526
Query: 298 ILSAL------TTF--------KILQEPIYYLPE-----------------SISMMIQAK 326
+L L +TF +Q+ Y E ++ + K
Sbjct: 527 VLQFLVSIKRISTFLECDNATCSTVQDMEEYWREQREHSTACQLAAVLENVDVTAFVPVK 586
Query: 327 VP---------LDRIASFLCLEGLQ--------TDVLEKMPRGN--SDTAIEIIDGSFSW 367
+P L R LC E + + V+E G+ S + + G+
Sbjct: 587 LPRAPKVKTSLLSRALRMLCCEQCRPTKRHPSPSVVVEDTDYGSPSSASRHIVEGGTGGG 646
Query: 368 DFSSPNPT---------------------LRNINLKVFHGMRVAVCGTVGSGKSSCLSCI 406
++P LR++++ V G V G GSGKS+ L +
Sbjct: 647 HEATPTSERSAKTPKMKTDDFFELEPKVLLRDVSVSVPRGKLTVVLGATGSGKSTLLQSL 706
Query: 407 LGGVPKESGIIRLCGTKAYVAQSPWIQSGKIEENILFGKEMDRERYERVLEACSLKKDLE 466
L G + + AYV Q WI + + NILF E D R + L+ DL
Sbjct: 707 LSQFEISEGRVWAERSIAYVPQQAWIMNATVRGNILFFDEEDAARLADAVRVSQLEADLA 766
Query: 467 VLPFGDQTIIGERGINLSGGQKQRIQIARPLYQDADIFLLDDPFSPVDDHTGAHLFKFCW 526
L G +T IGE+G+NLSGGQK R+ +AR +Y + D++LLDDP S +D H G + + C+
Sbjct: 767 QLGGGLETEIGEKGVNLSGGQKARVSLARAVYANRDVYLLDDPLSALDAHVGERVVEECF 826
Query: 527 VS--SSKTVIYATHQVEFLPAADLILVIKDGKITQAGKYSDILNSGTDFMELVGAHKQAL 584
+ + KT + ATHQV +P AD ++ + DG++ +G + DFM A
Sbjct: 827 LGALAGKTRVLATHQVHVVPRADYVVALGDGRVEFSGSSA-------DFMRTSLYATLAA 879
Query: 585 SGLDSIDR---GPVSERKSINKENDGTSTTNEIVNKEENKNFQSDDEAALP--KGQLVQE 639
++ D +E ++ G V K+E N + D AAL G+L+
Sbjct: 880 ELKENKDSKEGDADAEVAEVDAAPGGAVDHEPPVAKQEG-NAEGGDGAALDAAAGRLMTR 938
Query: 640 EEREKGKVGFSVYWKYMTTAYGGVLVPFILLAQIIFQIFQIGSNYWMA-WATPVAKDVNP 698
EE+ G V +S Y Y+ G F+L + ++ + S W++ W+T K
Sbjct: 939 EEKASGSVPWSTYVAYLRFCGGLHAAGFVLATFAVTELVTVSSGVWLSMWSTRSFKLSAA 998
Query: 699 AVGASTLIIVYVGA---------GYKTATQLFNKMHVCIFR----APMYFFDSTPSGRIL 745
L IV +G Y+ + MH + R M FFD+TP GRIL
Sbjct: 999 TYLYVYLGIVLLGTFSVPLRFFLSYEAMRRGSRNMHRDLLRSVSRGTMSFFDTTPLGRIL 1058
Query: 746 NRVSENVKWADQSAADMDIPYDIGAFAFSMIQLL----GI---IVVMSLVAWQVLIVFVP 798
NR S ++ D + S + LL I I+V S VL+ VP
Sbjct: 1059 NRFSRDIDILDNTLPM------------SYLYLLQCLFSICSSILVTSASQPFVLVALVP 1106
Query: 799 VIATFIWYQ--QYYITSTRELSRLIGVCKAPVIQQFSETISGSTTIRSLDQELRFRDTNM 856
+++Y+ Q+Y ++ RE+ R+ V K+PV E + GS TI + + +
Sbjct: 1107 CG--YLYYRLMQFYNSANREIRRIKSVAKSPVFTLLEEALQGSATITAYGKAHLVMQEAL 1164
Query: 857 KLIDEYSRPKFHIAGAME-----WLRFCIDMLSSITFAFSLAF----------------L 895
+ +D + +E WL ++ LS+I +A L
Sbjct: 1165 RRLD-----VVYSCSYLENVANRWLGVRVEFLSNIV-VTVIALIGVIGTMLRATSQEIGL 1218
Query: 896 ISVP-----------NGIIHPYKNLERKIISVERILQ-CACIPSE--PAL---------- 931
+S+ N ++ +E + SVER+L +P E P L
Sbjct: 1219 VSLSLTMAMQTTATLNWLVRQVATVEADMNSVERLLYYTDEVPHEDMPELDEEVDALERR 1278
Query: 932 -----------VIEATKPNNSRP---SHGEVNIRHLQVRYAPNLPLVLR----------- 966
VIE P ++ P G + +Q+RY LPLVLR
Sbjct: 1279 TGMAADVTGTVVIEPASPTSAAPHPVQAGSLVFEGVQMRYREGLPLVLRGVSFRIAPREK 1338
Query: 967 ----GRTGSGKSTLIQTLFRIVESTAGHILIDGKDISLIGLHDLRTRLSIIPQDPTMFEG 1022
GRTGSGKSTL+ T R+VE G I ++G++I GL +LR + S+IPQDP +F+G
Sbjct: 1339 VGIVGRTGSGKSTLLLTFMRMVEVCGGEIRVNGREIGAYGLRELRRQFSMIPQDPVLFDG 1398
Query: 1023 TTRSNLDPLEEHADEQIWEALDKCQLGDEVRKKKGKLDSQ------------------GR 1064
T R N+DP E + ++W AL+ L + V + +DS+ R
Sbjct: 1399 TVRQNVDPFLEASSAEVWAALELVGLRERVASESEGIDSRVLEGGSNYSVGQRQLMCMAR 1458
Query: 1065 VLLKK-SKVLVLDEATASVDTATDNQIQQTLRQHFSDCTVVTIAHRITSVLDSAMVLLLN 1123
LLKK S +++DEATA++D A D QIQ T+ FS TV+TIAHR+ +V +++++
Sbjct: 1459 ALLKKGSGFILMDEATANIDPALDRQIQATVMSAFSAYTVITIAHRLHTVAQYDKIIVMD 1518
Query: 1124 HGLIKEYDSPTKLLENKSSSFAQLV 1148
HG + E SP +L+ N+ S F +V
Sbjct: 1519 HGAVAEMGSPRELVMNRQSIFHSMV 1543
|
Length = 1560 |
| >gnl|CDD|213217 cd03250, ABCC_MRP_domain1, ATP-binding cassette domain 1 of multidrug resistance-associated protein, subfamily C | Back alignment and domain information |
|---|
Score = 304 bits (780), Expect = 5e-96
Identities = 113/204 (55%), Positives = 148/204 (72%), Gaps = 5/204 (2%)
Query: 358 IEIIDGSFSWD--FSSPNPTLRNINLKVFHGMRVAVCGTVGSGKSSCLSCILGGVPKESG 415
I + D SF+WD + TL++INL+V G VA+ G VGSGKSS LS +LG + K SG
Sbjct: 1 ISVEDASFTWDSGEQETSFTLKDINLEVPKGELVAIVGPVGSGKSSLLSALLGELEKLSG 60
Query: 416 IIRLCGTKAYVAQSPWIQSGKIEENILFGKEMDRERYERVLEACSLKKDLEVLPFGDQTI 475
+ + G+ AYV+Q PWIQ+G I ENILFGK D ERYE+V++AC+L+ DLE+LP GD T
Sbjct: 61 SVSVPGSIAYVSQEPWIQNGTIRENILFGKPFDEERYEKVIKACALEPDLEILPDGDLTE 120
Query: 476 IGERGINLSGGQKQRIQIARPLYQDADIFLLDDPFSPVDDHTGAHLFKFCWVS---SSKT 532
IGE+GINLSGGQKQRI +AR +Y DADI+LLDDP S VD H G H+F+ C + ++KT
Sbjct: 121 IGEKGINLSGGQKQRISLARAVYSDADIYLLDDPLSAVDAHVGRHIFENCILGLLLNNKT 180
Query: 533 VIYATHQVEFLPAADLILVIKDGK 556
I THQ++ LP AD I+V+ +G+
Sbjct: 181 RILVTHQLQLLPHADQIVVLDNGR 204
|
This subfamily is also known as MRP (multidrug resistance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate. Length = 204 |
| >gnl|CDD|213211 cd03244, ABCC_MRP_domain2, ATP-binding cassette domain 2 of multidrug resistance-associated protein | Back alignment and domain information |
|---|
Score = 291 bits (748), Expect = 3e-91
Identities = 111/221 (50%), Positives = 149/221 (67%), Gaps = 33/221 (14%)
Query: 946 GEVNIRHLQVRYAPNLPLVLR---------------GRTGSGKSTLIQTLFRIVESTAGH 990
G++ +++ +RY PNLP VL+ GRTGSGKS+L+ LFR+VE ++G
Sbjct: 1 GDIEFKNVSLRYRPNLPPVLKNISFSIKPGEKVGIVGRTGSGKSSLLLALFRLVELSSGS 60
Query: 991 ILIDGKDISLIGLHDLRTRLSIIPQDPTMFEGTTRSNLDPLEEHADEQIWEALDKCQLGD 1050
ILIDG DIS IGLHDLR+R+SIIPQDP +F GT RSNLDP E++DE++W+AL++ L +
Sbjct: 61 ILIDGVDISKIGLHDLRSRISIIPQDPVLFSGTIRSNLDPFGEYSDEELWQALERVGLKE 120
Query: 1051 EVRKKKGKLD----------SQG--------RVLLKKSKVLVLDEATASVDTATDNQIQQ 1092
V G LD S G R LL+KSK+LVLDEATASVD TD IQ+
Sbjct: 121 FVESLPGGLDTVVEEGGENLSVGQRQLLCLARALLRKSKILVLDEATASVDPETDALIQK 180
Query: 1093 TLRQHFSDCTVVTIAHRITSVLDSAMVLLLNHGLIKEYDSP 1133
T+R+ F DCTV+TIAHR+ +++DS +L+L+ G + E+DSP
Sbjct: 181 TIREAFKDCTVLTIAHRLDTIIDSDRILVLDKGRVVEFDSP 221
|
The ABC subfamily C is also known as MRP (multidrug resistance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate. Length = 221 |
| >gnl|CDD|213269 cd03369, ABCC_NFT1, ATP-binding cassette domain 2 of NFT1, subfamily C | Back alignment and domain information |
|---|
Score = 232 bits (593), Expect = 5e-70
Identities = 103/206 (50%), Positives = 143/206 (69%), Gaps = 15/206 (7%)
Query: 943 PSHGEVNIRHLQVRYAPNLPLVLR---------------GRTGSGKSTLIQTLFRIVEST 987
P HGE+ + +L VRYAP+LP VL+ GRTG+GKSTLI LFR +E+
Sbjct: 2 PEHGEIEVENLSVRYAPDLPPVLKNVSFKVKAGEKIGIVGRTGAGKSTLILALFRFLEAE 61
Query: 988 AGHILIDGKDISLIGLHDLRTRLSIIPQDPTMFEGTTRSNLDPLEEHADEQIWEALDKCQ 1047
G I IDG DIS I L DLR+ L+IIPQDPT+F GT RSNLDP +E++DE+I+ AL +
Sbjct: 62 EGKIEIDGIDISTIPLEDLRSSLTIIPQDPTLFSGTIRSNLDPFDEYSDEEIYGALRVSE 121
Query: 1048 LGDEVRKKKGKLDSQGRVLLKKSKVLVLDEATASVDTATDNQIQQTLRQHFSDCTVVTIA 1107
G + + + +L R LLK+ +VLVLDEATAS+D ATD IQ+T+R+ F++ T++TIA
Sbjct: 122 GGLNLSQGQRQLLCLARALLKRPRVLVLDEATASIDYATDALIQKTIREEFTNSTILTIA 181
Query: 1108 HRITSVLDSAMVLLLNHGLIKEYDSP 1133
HR+ +++D +L+++ G +KEYD P
Sbjct: 182 HRLRTIIDYDKILVMDAGEVKEYDHP 207
|
Domain 2 of NFT1 (New full-length MRP-type transporter 1). NFT1 belongs to the MRP (multidrug resistance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate. Length = 207 |
| >gnl|CDD|224055 COG1132, MdlB, ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 219 bits (561), Expect = 3e-61
Identities = 124/541 (22%), Positives = 225/541 (41%), Gaps = 91/541 (16%)
Query: 667 FILLAQIIFQIFQIGSNYWMAWATPVAKDVNPAVGASTLIIVYVGAGYKTATQLFNKMHV 726
+LL ++ + + +Y + + LF K+
Sbjct: 57 LLLLLALLGGVLRALQSYLGSR-------------------LGQKIVADLRRDLFEKLL- 96
Query: 727 CIFRAPMYFFDSTPSGRILNRVSENVKWADQSAADMDIPYDIGAFAFSMIQLLGIIVVMS 786
R P+ FFD SG +++R++ +V A + + S++ L+G +V++
Sbjct: 97 ---RLPLSFFDKAKSGDLISRLTNDV-EAVSNLVSTVLV----LVFTSILLLIGSLVLLF 148
Query: 787 LVAWQVLIVFVPVIATFIWYQQYYITSTRELSRLIGVCKAPVIQQFSETISGSTTIRSLD 846
++W++ ++ + ++ +R+LSR + + + E++SG I++
Sbjct: 149 SLSWRLALILLLILPLLALVLSLLARKSRKLSRRVREALGELNARLLESLSGIRVIKAFG 208
Query: 847 QELRFRDTNMKLIDEYSRPKFHIAGAMEWLRFCIDMLSSITFAFSLAF-LISVPNGIIHP 905
E R + +E R + L + +LSS+ LA V +G +
Sbjct: 209 AEDRELKRFEEANEELRRANLRASRLEALLAPLMLLLSSLGTVLVLALGGFLVLSGSLTV 268
Query: 906 -----------------------YKNLERKIISVERILQCACIPSEPALVIEATKPNNSR 942
L+R + ER+ + + E V + P+ +
Sbjct: 269 GALAAFILYLLRLLTPILQLGEVVSLLQRASAAAERLFE---LLDEEPEVED--PPDPLK 323
Query: 943 PSHGEVNIRHLQVRYAPNLP--------------LVLRGRTGSGKSTLIQTLFRIVESTA 988
+ G + ++ Y P + + G +GSGKSTLI+ L R+ + T+
Sbjct: 324 DTIGSIEFENVSFSYPGKKPVLKDISFSIEPGEKVAIVGPSGSGKSTLIKLLLRLYDPTS 383
Query: 989 GHILIDGKDISLIGLHDLRTRLSIIPQDPTMFEGTTRSNLDPLEEHA-DEQIWEALDKCQ 1047
G ILIDG DI I L LR R+ I+ QDP +F GT R N+ A DE+I EAL
Sbjct: 384 GEILIDGIDIRDISLDSLRKRIGIVSQDPLLFSGTIRENIALGRPDATDEEIEEALKLAN 443
Query: 1048 LGDEVRKKKGKLD----------SQG--------RVLLKKSKVLVLDEATASVDTATDNQ 1089
+ + D S G R LL+ +L+LDEAT+++DT T+
Sbjct: 444 AHEFIANLPDGYDTIVGERGVNLSGGQRQRLAIARALLRNPPILILDEATSALDTETEAL 503
Query: 1090 IQQTLRQHFSDCTVVTIAHRITSVLDSAMVLLLNHGLIKEYDSPTKLLENKSSSFAQLVA 1149
IQ L++ T + IAHR++++ ++ +++L++G I E + +LL K +A+L
Sbjct: 504 IQDALKKLLKGRTTLIIAHRLSTIKNADRIIVLDNGRIVERGTHEELL-AKGGLYARLYQ 562
Query: 1150 E 1150
Sbjct: 563 A 563
|
Length = 567 |
| >gnl|CDD|233335 TIGR01271, CFTR_protein, cystic fibrosis transmembrane conductor regulator (CFTR) | Back alignment and domain information |
|---|
Score = 229 bits (584), Expect = 5e-61
Identities = 192/683 (28%), Positives = 310/683 (45%), Gaps = 102/683 (14%)
Query: 3 TPYSNAGLFSIRSFSWMGSLIALGNKRTLDLEDVPRLDCSDSIYGVSPVLQNKLEAVVGV 62
+P A S F W ++ G ++ L+L D+ ++ DS +S L+ + + +
Sbjct: 4 SPVEKANFLSKLFFWWTRPILRKGYRQKLELSDIYQIPSFDSADNLSERLEREWDRELAS 63
Query: 63 ANR----LTALRLAKVLFFSAWQEILFIAILALLYTLATYVGPYLIDNFVQYLNGRQAFE 118
A + L ALR FF W+ +F IL V P L+ + + A E
Sbjct: 64 AKKNPKLLNALRRC---FF--WR-FVFYGILLYFGEATKAVQPLLLGRIIASYDPFNAPE 117
Query: 119 YE-GYVLCLSERHWF-----------FQVQQFGIRFRATLFAMIYNKGLTLSGQAKQGNT 166
E Y L L F F + G++ R LF++IY K L LS + +
Sbjct: 118 REIAYYLALGLCLLFIVRTLLLHPAIFGLHHLGMQMRIALFSLIYKKTLKLSSRVLDKIS 177
Query: 167 SGEIINLIAVDAERALLILYKKLGLAS---IATLLAT-------------------AIVM 204
+G++++L++ + + + L LA IA L +++
Sbjct: 178 TGQLVSLLSNNLNK----FDEGLALAHFVWIAPLQVILLMGLIWELLEVNGFCGLGFLIL 233
Query: 205 LANFP--LGRLREKFQDKFMETKDRRIKATSEILRNMRILKLQGWE---------LKKNE 253
LA F LG+ ++DK R+ TSEI+ N++ +K WE ++++E
Sbjct: 234 LALFQACLGQKMMPYRDKRAGKISERLAITSEIIENIQSVKAYCWEEAMEKIIKNIRQDE 293
Query: 254 TAWLKKSVYTEAMIS---FFCWGAPTFVSVVTFGSCILLGIPLESGMILSALTTFKILQE 310
+K Y S FF F+SVV + ++ GI L I + ++ +L+
Sbjct: 294 LKLTRKIAYLRYFYSSAFFFSGFFVVFLSVVPYA--LIKGIILRR--IFTTISYCIVLRM 349
Query: 311 PIY-YLPESISMMIQAKVPLDRIASFLCLEGLQT------------------------DV 345
+ P +I + + +I FLC E +T ++
Sbjct: 350 TVTRQFPGAIQTWYDSLGAITKIQDFLCKEEYKTLEYNLTTTEVEMVNVTASWDEGIGEL 409
Query: 346 LEKMPRGNSDTAIEIID-GSFSWDFSS-PNPTLRNINLKVFHGMRVAVCGTVGSGKSSCL 403
EK+ + N D G F +FS P L+NI+ K+ G +AV G+ GSGKSS L
Sbjct: 410 FEKIKQNNKARKQPNGDDGLFFSNFSLYVTPVLKNISFKLEKGQLLAVAGSTGSGKSSLL 469
Query: 404 SCILGGVPKESGIIRLCGTKAYVAQSPWIQSGKIEENILFGKEMDRERYERVLEACSLKK 463
I+G + G I+ G ++ Q+ WI G I++NI+FG D RY V++AC L++
Sbjct: 470 MMIMGELEPSEGKIKHSGRISFSPQTSWIMPGTIKDNIIFGLSYDEYRYTSVIKACQLEE 529
Query: 464 DLEVLPFGDQTIIGERGINLSGGQKQRIQIARPLYQDADIFLLDDPFSPVDDHTGAHLFK 523
D+ + P D+T++GE GI LSGGQ+ RI +AR +Y+DAD++LLD PF+ +D T +F+
Sbjct: 530 DIALFPEKDKTVLGEGGITLSGGQRARISLARAVYKDADLYLLDSPFTHLDVVTEKEIFE 589
Query: 524 --FCWVSSSKTVIYATHQVEFLPAADLILVIKDGKITQAGKYSDILNSGTDFMELVGAHK 581
C + S+KT I T ++E L AD IL++ +G G +S++ DF L
Sbjct: 590 SCLCKLMSNKTRILVTSKLEHLKKADKILLLHEGVCYFYGTFSELQAKRPDFSSL----- 644
Query: 582 QALSGLDSIDRGPVSERKSINKE 604
L GL++ D R SI E
Sbjct: 645 --LLGLEAFDNFSAERRNSILTE 665
|
The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se [Transport and binding proteins, Anions]. Length = 1490 |
| >gnl|CDD|213255 cd03288, ABCC_SUR2, ATP-binding cassette domain 2 of the sulfonylurea receptor SUR | Back alignment and domain information |
|---|
Score = 192 bits (488), Expect = 4e-55
Identities = 103/236 (43%), Positives = 143/236 (60%), Gaps = 33/236 (13%)
Query: 946 GEVNIRHLQVRYAPNLPLVLR---------------GRTGSGKSTLIQTLFRIVESTAGH 990
GE+ I L VRY NL VL+ GRTGSGKS+L FR+V+ G
Sbjct: 18 GEIKIHDLCVRYENNLKPVLKHVKAYIKPGQKVGICGRTGSGKSSLSLAFFRMVDIFDGK 77
Query: 991 ILIDGKDISLIGLHDLRTRLSIIPQDPTMFEGTTRSNLDPLEEHADEQIWEALDKCQLGD 1050
I+IDG DIS + LH LR+RLSII QDP +F G+ R NLDP + D+++WEAL+ QL +
Sbjct: 78 IVIDGIDISKLPLHTLRSRLSIILQDPILFSGSIRFNLDPECKCTDDRLWEALEIAQLKN 137
Query: 1051 EVRKKKGKLD----------SQG--------RVLLKKSKVLVLDEATASVDTATDNQIQQ 1092
V+ G LD S G R ++KS +L++DEATAS+D AT+N +Q+
Sbjct: 138 MVKSLPGGLDAVVTEGGENFSVGQRQLFCLARAFVRKSSILIMDEATASIDMATENILQK 197
Query: 1093 TLRQHFSDCTVVTIAHRITSVLDSAMVLLLNHGLIKEYDSPTKLLENKSSSFAQLV 1148
+ F+D TVVTIAHR++++LD+ +VL+L+ G++ E D+P LL + FA LV
Sbjct: 198 VVMTAFADRTVVTIAHRVSTILDADLVLVLSRGILVECDTPENLLAQEDGVFASLV 253
|
The SUR domain 2. The sulfonylurea receptor SUR is an ATP binding cassette (ABC) protein of the ABCC/MRP family. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity. Length = 257 |
| >gnl|CDD|213257 cd03290, ABCC_SUR1_N, ATP-binding cassette domain of the sulfonylurea receptor, subfamily C | Back alignment and domain information |
|---|
Score = 189 bits (482), Expect = 8e-55
Identities = 95/220 (43%), Positives = 132/220 (60%), Gaps = 25/220 (11%)
Query: 358 IEIIDGSFSWDFSSPNPTLRNINLKVFHGMRVAVCGTVGSGKSSCLSCILGGVPKESGII 417
+++ +G FSW S TL NIN+++ G + G VG GKSS L ILG + G +
Sbjct: 1 VQVTNGYFSW--GSGLATLSNINIRIPTGQLTMIVGQVGCGKSSLLLAILGEMQTLEGKV 58
Query: 418 -----------------RLCGTKAYVAQSPWIQSGKIEENILFGKEMDRERYERVLEACS 460
R + AY AQ PW+ + +EENI FG +++RY+ V +ACS
Sbjct: 59 HWSNKNESEPSFEATRSRNRYSVAYAAQKPWLLNATVEENITFGSPFNKQRYKAVTDACS 118
Query: 461 LKKDLEVLPFGDQTIIGERGINLSGGQKQRIQIARPLYQDADIFLLDDPFSPVDDHTGAH 520
L+ D+++LPFGDQT IGERGINLSGGQ+QRI +AR LYQ+ +I LDDPFS +D H H
Sbjct: 119 LQPDIDLLPFGDQTEIGERGINLSGGQRQRICVARALYQNTNIVFLDDPFSALDIHLSDH 178
Query: 521 L-----FKFCWVSSSKTVIYATHQVEFLPAADLILVIKDG 555
L KF +T++ TH++++LP AD I+ +KDG
Sbjct: 179 LMQEGILKFLQ-DDKRTLVLVTHKLQYLPHADWIIAMKDG 217
|
The SUR domain 1. The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity. Length = 218 |
| >gnl|CDD|213258 cd03291, ABCC_CFTR1, ATP-binding cassette domain of the cystic fibrosis transmembrane regulator, subfamily C | Back alignment and domain information |
|---|
Score = 183 bits (466), Expect = 9e-52
Identities = 100/267 (37%), Positives = 150/267 (56%), Gaps = 15/267 (5%)
Query: 344 DVLEKMPRGNSDTAIEIIDGSFSWDFSS----PNPTLRNINLKVFHGMRVAVCGTVGSGK 399
++LEK + N+D D + FS+ P L+NINLK+ G +A+ G+ GSGK
Sbjct: 19 ELLEKAKQENNDRKHSSDDNNLF--FSNLCLVGAPVLKNINLKIEKGEMLAITGSTGSGK 76
Query: 400 SSCLSCILGGVPKESGIIRLCGTKAYVAQSPWIQSGKIEENILFGKEMDRERYERVLEAC 459
+S L ILG + G I+ G ++ +Q WI G I+ENI+FG D RY+ V++AC
Sbjct: 77 TSLLMLILGELEPSEGKIKHSGRISFSSQFSWIMPGTIKENIIFGVSYDEYRYKSVVKAC 136
Query: 460 SLKKDLEVLPFGDQTIIGERGINLSGGQKQRIQIARPLYQDADIFLLDDPFSPVDDHTGA 519
L++D+ P D T++GE GI LSGGQ+ RI +AR +Y+DAD++LLD PF +D T
Sbjct: 137 QLEEDITKFPEKDNTVLGEGGITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVFTEK 196
Query: 520 HLFK--FCWVSSSKTVIYATHQVEFLPAADLILVIKDGKITQAGKYSDILNSGTDFMELV 577
+F+ C + ++KT I T ++E L AD IL++ +G G +S++ + DF
Sbjct: 197 EIFESCVCKLMANKTRILVTSKMEHLKKADKILILHEGSSYFYGTFSELQSLRPDFSSK- 255
Query: 578 GAHKQALSGLDSIDRGPVSERKSINKE 604
L G D+ D+ R SI E
Sbjct: 256 ------LMGYDTFDQFSAERRNSILTE 276
|
The CFTR subfamily domain 1. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits, or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2. Length = 282 |
| >gnl|CDD|233335 TIGR01271, CFTR_protein, cystic fibrosis transmembrane conductor regulator (CFTR) | Back alignment and domain information |
|---|
Score = 192 bits (490), Expect = 1e-49
Identities = 142/504 (28%), Positives = 236/504 (46%), Gaps = 87/504 (17%)
Query: 720 LFNKMHVCIFRAPMYFFDSTPSGRILNRVSENVKWADQSAADMDIPYDIGAFAFSMIQL- 778
L +M + +APM ++ +GRILNR ++++ D DM +P + F IQL
Sbjct: 960 LHEQMLHSVLQAPMAVLNTMKAGRILNRFTKDMAIID----DM-LPLTL----FDFIQLT 1010
Query: 779 ---LGIIVVMSLVAWQVLIVFVPVIATFIWYQQYYITSTRELSRLIGVCKAPVIQQFSET 835
LG I V+S++ + I +PV FI + Y++ ++++L +L ++P+ +
Sbjct: 1011 LIVLGAIFVVSVLQPYIFIAAIPVAVIFIMLRAYFLRTSQQLKQLESEARSPIFSHLITS 1070
Query: 836 ISGSTTIRSLDQELRFRDTNMKLIDEYSRPKFHIAGAMEWLRFCIDMLSSITFAFSLAFL 895
+ G TIR+ ++ F K ++ ++ F + W + ID++ F F
Sbjct: 1071 LKGLWTIRAFGRQSYFETLFHKALNLHTANWFLYLSTLRWFQMRIDII--FVFFFIAVTF 1128
Query: 896 ISVPN--------GII-----HPYKNLERKII----------SVERILQCACIPSEPA-- 930
I++ GII + L+ + SV R+ + +P E
Sbjct: 1129 IAIGTNQDGEGEVGIILTLAMNILSTLQWAVNSSIDVDGLMRSVSRVFKFIDLPQEEPRP 1188
Query: 931 ------------LVIEATKPNNSRPSHGEVNIRHLQVRYAPNLPLVLR------------ 966
LVIE PS G+++++ L +Y VL+
Sbjct: 1189 SGGGGKYQLSTVLVIENPHAQKCWPSGGQMDVQGLTAKYTEAGRAVLQDLSFSVEGGQRV 1248
Query: 967 ---GRTGSGKSTLIQTLFRIVESTAGHILIDGKDISLIGLHDLRTRLSIIPQDPTMFEGT 1023
GRTGSGKSTL+ L R++ ST G I IDG + + L R +IPQ +F GT
Sbjct: 1249 GLLGRTGSGKSTLLSALLRLL-STEGEIQIDGVSWNSVTLQTWRKAFGVIPQKVFIFSGT 1307
Query: 1024 TRSNLDPLEEHADEQIWEALDKCQLGDEVRKKKGKLDSQ------------------GRV 1065
R NLDP E+ +DE+IW+ ++ L + + KLD R
Sbjct: 1308 FRKNLDPYEQWSDEEIWKVAEEVGLKSVIEQFPDKLDFVLVDGGYVLSNGHKQLMCLARS 1367
Query: 1066 LLKKSKVLVLDEATASVDTATDNQIQQTLRQHFSDCTVVTIAHRITSVLDSAMVLLLNHG 1125
+L K+K+L+LDE +A +D T I++TL+Q FS+CTV+ HR+ ++L+ L++
Sbjct: 1368 ILSKAKILLLDEPSAHLDPVTLQIIRKTLKQSFSNCTVILSEHRVEALLECQQFLVIEGS 1427
Query: 1126 LIKEYDSPTKLLENKSSSFAQLVA 1149
+K+YDS KLL N++S F Q ++
Sbjct: 1428 SVKQYDSIQKLL-NETSLFKQAMS 1450
|
The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se [Transport and binding proteins, Anions]. Length = 1490 |
| >gnl|CDD|224055 COG1132, MdlB, ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 170 bits (432), Expect = 1e-44
Identities = 131/571 (22%), Positives = 223/571 (39%), Gaps = 61/571 (10%)
Query: 65 RLTALRLAKVLFFSAWQEILFIAILALLYTLATYVGPYLIDNFV--QYLNGRQAFEYEGY 122
RL K+L + IL + + ALL L + +ID +
Sbjct: 6 RLLKYLKYKLLLLA----ILLLLLSALLSLLLPLLIGRIIDALLADLGELLELLLLLLLL 61
Query: 123 VLCLSERHWFFQVQQ--FGIRFRATLFAMIYNKGLTLSGQAKQGNTSGEIINLIAVDAER 180
L G + A L ++ K L L SG++I+ + D E
Sbjct: 62 ALLGGVLRALQSYLGSRLGQKIVADLRRDLFEKLLRLPLSFFDKAKSGDLISRLTNDVEA 121
Query: 181 ---------------------ALLILYKKLGLASIATLLATAIVMLANFPLGRLREKFQD 219
+L++L+ ++ LL ++ L L R K
Sbjct: 122 VSNLVSTVLVLVFTSILLLIGSLVLLFSLSWRLALILLLILPLLALVLSLLARKSRKLSR 181
Query: 220 KFMETKDRRIKATSEILRNMRILKLQGWE------LKKNETAWLKKSVYTEAMISFFCWG 273
+ E E L +R++K G E ++ + ++ + +
Sbjct: 182 RVREALGELNARLLESLSGIRVIKAFGAEDRELKRFEEANEELRRANLRASRLEALL-AP 240
Query: 274 APTFVSVVTFGSCILLGI------PLESGMILSALTTFKILQEPIYYLPESISMMIQAKV 327
+S + + LG L G + + + L PI L E +S++ +A
Sbjct: 241 LMLLLSSLGTVLVLALGGFLVLSGSLTVGALAAFILYLLRLLTPILQLGEVVSLLQRASA 300
Query: 328 PLDRIASFLCLEGLQTDVLEKMPRGNSDTAIEIIDGSFSWDFSSPNPTLRNINLKVFHGM 387
+R+ L E D + + E + SFS+ P L++I+ + G
Sbjct: 301 AAERLFELLDEEPEVEDPPDPLKDTIGSIEFENV--SFSYP--GKKPVLKDISFSIEPGE 356
Query: 388 RVAVCGTVGSGKSSCLSCILGGVPKESGIIRLCGTK-------------AYVAQSPWIQS 434
+VA+ G GSGKS+ + +L SG I + G V+Q P + S
Sbjct: 357 KVAIVGPSGSGKSTLIKLLLRLYDPTSGEILIDGIDIRDISLDSLRKRIGIVSQDPLLFS 416
Query: 435 GKIEENILFGK-EMDRERYERVLEACSLKKDLEVLPFGDQTIIGERGINLSGGQKQRIQI 493
G I ENI G+ + E E L+ + + + LP G TI+GERG+NLSGGQ+QR+ I
Sbjct: 417 GTIRENIALGRPDATDEEIEEALKLANAHEFIANLPDGYDTIVGERGVNLSGGQRQRLAI 476
Query: 494 ARPLYQDADIFLLDDPFSPVDDHTGAHLFK-FCWVSSSKTVIYATHQVEFLPAADLILVI 552
AR L ++ I +LD+ S +D T A + + +T + H++ + AD I+V+
Sbjct: 477 ARALLRNPPILILDEATSALDTETEALIQDALKKLLKGRTTLIIAHRLSTIKNADRIIVL 536
Query: 553 KDGKITQAGKYSDILNSGTDFMELVGAHKQA 583
+G+I + G + ++L G + L A A
Sbjct: 537 DNGRIVERGTHEELLAKGGLYARLYQAQGGA 567
|
Length = 567 |
| >gnl|CDD|225183 COG2274, SunT, ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 172 bits (438), Expect = 2e-44
Identities = 117/493 (23%), Positives = 199/493 (40%), Gaps = 88/493 (17%)
Query: 728 IFRAPMYFFDSTPSGRILNRVSENVKWADQSAADMDIPYDIGAFAFSMIQL-------LG 780
+ R P+ +F+ G I++RV E + + S++ L L
Sbjct: 237 LLRLPLSYFEKRSVGEIISRVRELEQIRE-------------FLTGSILTLIIDLLFALI 283
Query: 781 IIVVMSLVAWQ---VLIVFVPVIATFIWYQQYYITSTRELSRLIGVCKAPVIQQFSETIS 837
+ VM L +W+ +++ +P+ Q R +R + A ETI
Sbjct: 284 FLAVMFLYSWKLTLIVLAAIPLNVLITLIFQPL---LRRKTRKLIEESAEQQSFLVETIK 340
Query: 838 GSTTIRSLDQELRFRDTNMKLIDEYSRPKFHIAGAMEWLRFCIDMLSSIT---------- 887
G T+++L E RFR + + F L +L ++
Sbjct: 341 GIETVKALAAEPRFRSQWDNRLAKQVNIGFKTEKLALILNTIKSLLQQLSSVLILWFGAI 400
Query: 888 ------------FAFS--LAFLISVPNGIIHPYKNLERKIISVERILQCACIPSEPALVI 933
AF+ + IS + + + ++ +++ER+ I P
Sbjct: 401 LVLEGELTLGQLVAFNMLAGYFISPITRLSQLWTDFQQAKVALERLGD---ILDTPPEQE 457
Query: 934 EATKPNNSRPSHGEVNIRHLQVRYAPNLPLVLR---------------GRTGSGKSTLIQ 978
+ GE+ ++ RY P+ P VL GR+GSGKSTL++
Sbjct: 458 GDKTLIHLPKLQGEIEFENVSFRYGPDDPPVLEDLSLEIPPGEKVAIVGRSGSGKSTLLK 517
Query: 979 TLFRIVESTAGHILIDGKDISLIGLHDLRTRLSIIPQDPTMFEGTTRSNLDPLEEHA-DE 1037
L + + G IL+DG D++ I L LR ++ + QDP +F G+ R N+ A DE
Sbjct: 518 LLLGLYKPQQGRILLDGVDLNDIDLASLRRQVGYVLQDPFLFSGSIRENIALGNPEATDE 577
Query: 1038 QIWEALDKCQLGDEVRKKKGKLD----------SQG--------RVLLKKSKVLVLDEAT 1079
+I EA + + D S G R LL K K+L+LDEAT
Sbjct: 578 EIIEAAQLAGAHEFIENLPMGYDTPVGEGGANLSGGQRQRLALARALLSKPKILLLDEAT 637
Query: 1080 ASVDTATDNQIQQTLRQHFSDCTVVTIAHRITSVLDSAMVLLLNHGLIKEYDSPTKLLEN 1139
+++D T+ I Q L Q TV+ IAHR++++ + +++L+ G I E S +LL
Sbjct: 638 SALDPETEAIILQNLLQILQGRTVIIIAHRLSTIRSADRIIVLDQGKIVEQGSHEELL-A 696
Query: 1140 KSSSFAQLVAEYT 1152
+ +A+L +
Sbjct: 697 QGGLYARLYQQQE 709
|
Length = 709 |
| >gnl|CDD|225183 COG2274, SunT, ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 152 bits (386), Expect = 6e-38
Identities = 117/426 (27%), Positives = 187/426 (43%), Gaps = 49/426 (11%)
Query: 181 ALLILY-KKLGLASIATLLATAIVMLANFPLGRLREKFQDKFMETKDRRIKATSEILRNM 239
A++ LY KL L +A + ++ L PL LR K + E+ +++ E ++ +
Sbjct: 286 AVMFLYSWKLTLIVLAAIPLNVLITLIFQPL--LRRKTRKLIEESAEQQSF-LVETIKGI 342
Query: 240 RILKLQG--------WELKKNETAWLK-KSVYTEAMISFFCWGAPTFVSVVTFGSCILLG 290
+K W+ + + + K+ +++ + + ++ + G
Sbjct: 343 ETVKALAAEPRFRSQWDNRLAKQVNIGFKTEKLALILNTI----KSLLQQLSSVLILWFG 398
Query: 291 IPL--ESGMILSALTTFKILQ----EPIYYLPESISMMIQAKVPLDRIASFLCLEGLQTD 344
L E + L L F +L PI L + + QAKV L+R+ L Q
Sbjct: 399 AILVLEGELTLGQLVAFNMLAGYFISPITRLSQLWTDFQQAKVALERLGDILDTPPEQEG 458
Query: 345 VLEKMPRGNSDTAIEIIDGSFSWDFSSPNPTLRNINLKVFHGMRVAVCGTVGSGKSSCLS 404
+ IE + SF + P P L +++L++ G +VA+ G GSGKS+ L
Sbjct: 459 DKTLIHLPKLQGEIEFENVSFRYGPDDP-PVLEDLSLEIPPGEKVAIVGRSGSGKSTLLK 517
Query: 405 CILGGVPKESGIIRLCGTK-------------AYVAQSPWIQSGKIEENILFGKEMDRER 451
+LG + G I L G YV Q P++ SG I ENI G
Sbjct: 518 LLLGLYKPQQGRILLDGVDLNDIDLASLRRQVGYVLQDPFLFSGSIRENIALGNPEAT-- 575
Query: 452 YERVLEACSLKK---DLEVLPFGDQTIIGERGINLSGGQKQRIQIARPLYQDADIFLLDD 508
E ++EA L +E LP G T +GE G NLSGGQ+QR+ +AR L I LLD+
Sbjct: 576 DEEIIEAAQLAGAHEFIENLPMGYDTPVGEGGANLSGGQRQRLALARALLSKPKILLLDE 635
Query: 509 PFSPVDDHTGAH----LFKFCWVSSSKTVIYATHQVEFLPAADLILVIKDGKITQAGKYS 564
S +D T A L + +TVI H++ + +AD I+V+ GKI + G +
Sbjct: 636 ATSALDPETEAIILQNLLQIL---QGRTVIIIAHRLSTIRSADRIIVLDQGKIVEQGSHE 692
Query: 565 DILNSG 570
++L G
Sbjct: 693 ELLAQG 698
|
Length = 709 |
| >gnl|CDD|131258 TIGR02203, MsbA_lipidA, lipid A export permease/ATP-binding protein MsbA | Back alignment and domain information |
|---|
Score = 148 bits (376), Expect = 3e-37
Identities = 123/537 (22%), Positives = 225/537 (41%), Gaps = 99/537 (18%)
Query: 665 VPFILLAQIIFQ-IFQIGSNYWMAWATPVAKDVNPAVGASTLIIVYVGAGYKTATQLFNK 723
VP +++ + + I S Y ++W V + + V ++F K
Sbjct: 56 VPLVVIGLAVLRGICSFVSTYLLSW-----------VSNKVVRDIRV--------RMFEK 96
Query: 724 MHVCIFRAPMYFFDSTPSGRILNRVSENVKWADQSAADMDIPYDIGAFAFSMIQLLGIIV 783
+ P+ FFD P+G +L+R++ + + +A D + ++G+ +
Sbjct: 97 L----LGLPVSFFDRQPTGTLLSRITFDSEQVASAATDA-----FIVLVRETLTVIGLFI 147
Query: 784 VMSLVAWQ---VLIVFVPVIATFIWYQQYYITSTRELSRLIGVCKAPVIQQFSETISGST 840
V+ +WQ +++V +PV++ + R +S+ I V ET+ G
Sbjct: 148 VLLYYSWQLTLIVVVMLPVLS---ILMRRVSKRLRRISKEIQNSMGQVTTVAEETLQGYR 204
Query: 841 TIRSL---DQEL-RF-------RDTNMKLI--DEYSRP--KFHIAGAMEWLRFCI--DML 883
++ E RF R MK+ S P + + A+ + F
Sbjct: 205 VVKLFGGQAYETRRFDAVSNRNRRLAMKMTSAGSISSPITQLIASLALAVVLFIALFQAQ 264
Query: 884 SSITFAFSLAFLISVPNGIIHPYKNL-------ERKIISVERILQCACIPSEPALVIEAT 936
+ A I+ +I P K+L +R + + E + + S P
Sbjct: 265 AGSLTAGDFTAFITAMIALIRPLKSLTNVNAPMQRGLAAAESL--FTLLDSPPEKDTGTR 322
Query: 937 KPNNSRPSHGEVNIRHLQVRYAP-------NLPLVLR--------GRTGSGKSTLIQTLF 981
+R G+V R++ RY ++ LV+ GR+GSGKSTL+ +
Sbjct: 323 AIERAR---GDVEFRNVTFRYPGRDRPALDSISLVIEPGETVALVGRSGSGKSTLVNLIP 379
Query: 982 RIVESTAGHILIDGKDISLIGLHDLRTRLSIIPQDPTMFEGTTRSNL--DPLEEHADEQI 1039
R E +G IL+DG D++ L LR +++++ QD +F T +N+ E+ +I
Sbjct: 380 RFYEPDSGQILLDGHDLADYTLASLRRQVALVSQDVVLFNDTIANNIAYGRTEQADRAEI 439
Query: 1040 WEAL---------DKCQLG-DEVRKKKGKLDSQG--------RVLLKKSKVLVLDEATAS 1081
AL DK LG D + G L S G R LLK + +L+LDEAT++
Sbjct: 440 ERALAAAYAQDFVDKLPLGLDTPIGENGVLLSGGQRQRLAIARALLKDAPILILDEATSA 499
Query: 1082 VDTATDNQIQQTLRQHFSDCTVVTIAHRITSVLDSAMVLLLNHGLIKEYDSPTKLLE 1138
+D ++ +Q L + T + IAHR++++ + +++++ G I E + +LL
Sbjct: 500 LDNESERLVQAALERLMQGRTTLVIAHRLSTIEKADRIVVMDDGRIVERGTHNELLA 556
|
This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes [Cell envelope, Biosynthesis and degradation of surface polysaccharides and lipopolysaccharides, Transport and binding proteins, Other]. Length = 571 |
| >gnl|CDD|213195 cd03228, ABCC_MRP_Like, ATP-binding cassette domain of multidrug resistance protein-like transporters | Back alignment and domain information |
|---|
Score = 137 bits (347), Expect = 4e-37
Identities = 59/201 (29%), Positives = 95/201 (47%), Gaps = 54/201 (26%)
Query: 948 VNIRHLQVRYAPNLPLVLR---------------GRTGSGKSTLIQTLFRIVESTAGHIL 992
+ +++ Y VL+ G +GSGKSTL++ L R+ + T+G IL
Sbjct: 1 IEFKNVSFSYPGRPKPVLKDVSLTIKPGEKVAIVGPSGSGKSTLLKLLLRLYDPTSGEIL 60
Query: 993 IDGKDISLIGLHDLRTRLSIIPQDPTMFEGTTRSNLDPLEEHADEQIWEALDKCQLGDEV 1052
IDG D+ + L LR ++ +PQDP +F GT R N+ L
Sbjct: 61 IDGVDLRDLDLESLRKNIAYVPQDPFLFSGTIRENI--L--------------------- 97
Query: 1053 RKKKGKLDSQG--------RVLLKKSKVLVLDEATASVDTATDNQIQQTLRQHFSDCTVV 1104
S G R LL+ +L+LDEAT+++D T+ I + LR TV+
Sbjct: 98 --------SGGQRQRIAIARALLRDPPILILDEATSALDPETEALILEALRALAKGKTVI 149
Query: 1105 TIAHRITSVLDSAMVLLLNHG 1125
IAHR++++ D+ +++L+ G
Sbjct: 150 VIAHRLSTIRDADRIIVLDDG 170
|
The MRP (Multidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 171 |
| >gnl|CDD|213256 cd03289, ABCC_CFTR2, ATP-binding cassette domain 2 of CFTR,subfamily C | Back alignment and domain information |
|---|
Score = 139 bits (353), Expect = 1e-36
Identities = 80/237 (33%), Positives = 126/237 (53%), Gaps = 35/237 (14%)
Query: 946 GEVNIRHLQVRY---------------APNLPLVLRGRTGSGKSTLIQTLFRIVESTAGH 990
G++ ++ L +Y +P + L GRTGSGKSTL+ R++ +T G
Sbjct: 1 GQMTVKDLTAKYTEGGNAVLENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLL-NTEGD 59
Query: 991 ILIDGKDISLIGLHDLRTRLSIIPQDPTMFEGTTRSNLDPLEEHADEQIWEALDKCQLGD 1050
I IDG + + L R +IPQ +F GT R NLDP + +DE+IW+ ++ L
Sbjct: 60 IQIDGVSWNSVPLQKWRKAFGVIPQKVFIFSGTFRKNLDPYGKWSDEEIWKVAEEVGLKS 119
Query: 1051 EVRKKKGKLD----------SQG--------RVLLKKSKVLVLDEATASVDTATDNQIQQ 1092
+ + G+LD S G R +L K+K+L+LDE +A +D T I++
Sbjct: 120 VIEQFPGQLDFVLVDGGCVLSHGHKQLMCLARSVLSKAKILLLDEPSAHLDPITYQVIRK 179
Query: 1093 TLRQHFSDCTVVTIAHRITSVLDSAMVLLLNHGLIKEYDSPTKLLENKSSSFAQLVA 1149
TL+Q F+DCTV+ HRI ++L+ L++ +++YDS KLL N+ S F Q ++
Sbjct: 180 TLKQAFADCTVILSEHRIEAMLECQRFLVIEENKVRQYDSIQKLL-NEKSHFKQAIS 235
|
The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2. Length = 275 |
| >gnl|CDD|213221 cd03254, ABCC_Glucan_exporter_like, ATP-binding cassette domain of glucan transporter and related proteins, subfamily C | Back alignment and domain information |
|---|
Score = 136 bits (345), Expect = 4e-36
Identities = 63/193 (32%), Positives = 99/193 (51%), Gaps = 19/193 (9%)
Query: 967 GRTGSGKSTLIQTLFRIVESTAGHILIDGKDISLIGLHDLRTRLSIIPQDPTMFEGTTRS 1026
G TG+GK+TLI L R + G ILIDG DI I LR+ + ++ QD +F GT
Sbjct: 36 GPTGAGKTTLINLLMRFYDPQKGQILIDGIDIRDISRKSLRSMIGVVLQDTFLFSGTIME 95
Query: 1027 NLDPLEEHADEQIWEALDK-CQLGDEVRK----------KKGKLDSQG--------RVLL 1067
N+ +A ++ K D + K + G SQG R +L
Sbjct: 96 NIRLGRPNATDEEVIEAAKEAGAHDFIMKLPNGYDTVLGENGGNLSQGERQLLAIARAML 155
Query: 1068 KKSKVLVLDEATASVDTATDNQIQQTLRQHFSDCTVVTIAHRITSVLDSAMVLLLNHGLI 1127
+ K+L+LDEAT+++DT T+ IQ+ L + T + IAHR++++ ++ +L+L+ G I
Sbjct: 156 RDPKILILDEATSNIDTETEKLIQEALEKLMKGRTSIIIAHRLSTIKNADKILVLDDGKI 215
Query: 1128 KEYDSPTKLLENK 1140
E + +LL K
Sbjct: 216 IEEGTHDELLAKK 228
|
Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virulence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 229 |
| >gnl|CDD|227321 COG4988, CydD, ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 144 bits (366), Expect = 5e-36
Identities = 107/521 (20%), Positives = 190/521 (36%), Gaps = 115/521 (22%)
Query: 712 AGYKTATQLFNKMHVCIFRAPMYFFDSTPSGRILNRVSENVKWADQSAADMDIPYD--IG 769
A K L + + + F P+G E + ++ Y +
Sbjct: 67 AAAKVRASLRQLVLDKLAKLGPAFIAQKPAGSAATLALEGI-------EQLEPYYARYLP 119
Query: 770 AFAFSMIQLLGIIVVMSLVAWQ---VLIVFVPVIATFIWY--------QQYYITSTRELS 818
S I L I++ + W +L++ P+I F+ + ++ LS
Sbjct: 120 QMFLSAIVPLLILIAIFFFNWAAALILLITAPLIPLFMILVGLAAKDASEKQFSALARLS 179
Query: 819 RLIGVCKAPVIQQFSETISGSTTIRSLDQE-----------LRFRDTNMKLIDEYSRPKF 867
F + + G T+R+ + FR M ++ R F
Sbjct: 180 -----------GHFLDRLRGLETLRAFGRTEATEERIRKDSEDFRKATMSVL----RIAF 224
Query: 868 HIAGAMEWLRFCIDMLSS----ITFAFSLAFL--ISVPNGII------------------ 903
+ +E+ LS + F L +++ G+
Sbjct: 225 LSSAVLEF----FAYLSIALVAVYIGFRLLGEGDLTLFAGLFVLILAPEFFQPLRDLGSF 280
Query: 904 -HPYKNLERKIISVERILQCACIPSEPALVIEATKPNNSRPSHGEVNIRHLQVRYAPNLP 962
H E + +L+ S A K + E+++ +L RY P+
Sbjct: 281 FHAAAAGEAAADKLFTLLE-----SPVATPGSGEKAEVANEPPIEISLENLSFRY-PDGK 334
Query: 963 LVLR---------------GRTGSGKSTLIQTLFRIVESTAGHILIDGKDISLIGLHDLR 1007
L G +G+GKSTL+ L + T G I ++G D+ + R
Sbjct: 335 PALSDLNLTIKAGQLTALVGASGAGKSTLLNLLLGFLAPTQGEIRVNGIDLRDLSPEAWR 394
Query: 1008 TRLSIIPQDPTMFEGTTRSNLDPLEEHA-DEQIWEALDKCQLGDEVRKKKG---KLDSQG 1063
++S + Q+P +F GT R N+ A DE+I ALD+ L + V K G + G
Sbjct: 395 KQISWVSQNPYLFAGTIRENILLARPDASDEEIIAALDQAGLLEFVPKPDGLDTVIGEGG 454
Query: 1064 --------------RVLLKKSKVLVLDEATASVDTATDNQIQQTLRQHFSDCTVVTIAHR 1109
R LL + +L+LDE TA +D T+ I Q L++ TV+ I HR
Sbjct: 455 AGLSGGQAQRLALARALLSPASLLLLDEPTAHLDAETEQIILQALQELAKQKTVLVITHR 514
Query: 1110 ITSVLDSAMVLLLNHGLIKEYDSPTKLLENKSSSFAQLVAE 1150
+ D+ +++L++G + E + +L E + +A L+ +
Sbjct: 515 LEDAADADRIVVLDNGRLVEQGTHEELSEKQ-GLYANLLKQ 554
|
Length = 559 |
| >gnl|CDD|213220 cd03253, ABCC_ATM1_transporter, ATP-binding cassette domain of iron-sulfur clusters transporter, subfamily C | Back alignment and domain information |
|---|
Score = 133 bits (338), Expect = 4e-35
Identities = 64/200 (32%), Positives = 109/200 (54%), Gaps = 20/200 (10%)
Query: 967 GRTGSGKSTLIQTLFRIVESTAGHILIDGKDISLIGLHDLRTRLSIIPQDPTMFEGTTRS 1026
G +GSGKST+++ LFR + ++G ILIDG+DI + L LR + ++PQD +F T
Sbjct: 34 GPSGSGKSTILRLLFRFYDVSSGSILIDGQDIREVTLDSLRRAIGVVPQDTVLFNDTIGY 93
Query: 1027 NLDPLEEHA-DEQIWEALDKCQLGDEVRKKKGKLDSQ------------------GRVLL 1067
N+ A DE++ EA Q+ D++ + D+ R +L
Sbjct: 94 NIRYGRPDATDEEVIEAAKAAQIHDKIMRFPDGYDTIVGERGLKLSGGEKQRVAIARAIL 153
Query: 1068 KKSKVLVLDEATASVDTATDNQIQQTLRQHFSDCTVVTIAHRITSVLDSAMVLLLNHGLI 1127
K +L+LDEAT+++DT T+ +IQ LR T + IAHR+++++++ +++L G I
Sbjct: 154 KNPPILLLDEATSALDTHTEREIQAALRDVSKGRTTIVIAHRLSTIVNADKIIVLKDGRI 213
Query: 1128 KEYDSPTKLLENKSSSFAQL 1147
E + +LL K +A++
Sbjct: 214 VERGTHEELL-AKGGLYAEM 232
|
ATM1 is an ABC transporter that is expressed in the mitochondria. Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 236 |
| >gnl|CDD|213212 cd03245, ABCC_bacteriocin_exporters, ATP-binding cassette domain of bacteriocin exporters, subfamily C | Back alignment and domain information |
|---|
Score = 133 bits (336), Expect = 5e-35
Identities = 74/216 (34%), Positives = 104/216 (48%), Gaps = 16/216 (7%)
Query: 357 AIEIIDGSFSWDFSSPNPTLRNINLKVFHGMRVAVCGTVGSGKSSCLSCILGGVPKESGI 416
IE + SFS+ + P L N++L + G +VA+ G VGSGKS+ L + G SG
Sbjct: 2 RIEFRNVSFSYP-NQEIPALDNVSLTIRAGEKVAIIGRVGSGKSTLLKLLAGLYKPTSGS 60
Query: 417 IRLCGTKA-------------YVAQSPWIQSGKIEENILFGK-EMDRERYERVLEACSLK 462
+ L GT YV Q + G + +NI G D ER R E +
Sbjct: 61 VLLDGTDIRQLDPADLRRNIGYVPQDVTLFYGTLRDNITLGAPLADDERILRAAELAGVT 120
Query: 463 KDLEVLPFGDQTIIGERGINLSGGQKQRIQIARPLYQDADIFLLDDPFSPVDDHTGAHLF 522
+ P G IGERG LSGGQ+Q + +AR L D I LLD+P S +D ++ L
Sbjct: 121 DFVNKHPNGLDLQIGERGRGLSGGQRQAVALARALLNDPPILLLDEPTSAMDMNSEERLK 180
Query: 523 K-FCWVSSSKTVIYATHQVEFLPAADLILVIKDGKI 557
+ + KT+I TH+ L D I+V+ G+I
Sbjct: 181 ERLRQLLGDKTLIIITHRPSLLDLVDRIIVMDSGRI 216
|
Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane. Length = 220 |
| >gnl|CDD|234033 TIGR02857, CydD, thiol reductant ABC exporter, CydD subunit | Back alignment and domain information |
|---|
Score = 140 bits (355), Expect = 7e-35
Identities = 67/202 (33%), Positives = 101/202 (50%), Gaps = 17/202 (8%)
Query: 368 DFSSPN--PTLRNINLKVFHGMRVAVCGTVGSGKSSCLSCILGGVPKESGIIRLCGTK-- 423
+ P P LR ++ V G RVA+ G G+GKS+ L+ +LG V G I + G
Sbjct: 328 SVAYPGRRPALRPVSFTVPPGERVALVGPSGAGKSTLLNLLLGFVDPTEGSIAVNGVPLA 387
Query: 424 -----------AYVAQSPWIQSGKIEENILFGK-EMDRERYERVLEACSLKKDLEVLPFG 471
A+V Q P++ +G I ENI + + LE L + + LP G
Sbjct: 388 DADADSWRDQIAWVPQHPFLFAGTIAENIRLARPDASDAEIREALERAGLDEFVAALPQG 447
Query: 472 DQTIIGERGINLSGGQKQRIQIARPLYQDADIFLLDDPFSPVDDHTGAHLFK-FCWVSSS 530
T IGE G LSGGQ QR+ +AR +DA + LLD+P + +D T A + + ++
Sbjct: 448 LDTPIGEGGAGLSGGQAQRLALARAFLRDAPLLLLDEPTAHLDAETEAEVLEALRALAQG 507
Query: 531 KTVIYATHQVEFLPAADLILVI 552
+TV+ TH++ AD I+V+
Sbjct: 508 RTVLLVTHRLALAALADRIVVL 529
|
The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex. Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD. Length = 529 |
| >gnl|CDD|227321 COG4988, CydD, ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 140 bits (354), Expect = 1e-34
Identities = 76/273 (27%), Positives = 130/273 (47%), Gaps = 17/273 (6%)
Query: 324 QAKVPLDRIASFLCLEGLQTDVLEKMPRGNSDTAIEIIDGSFSWDFSSPNPTLRNINLKV 383
+ D++ + L EK N IEI + S+ + P L ++NL +
Sbjct: 286 AGEAAADKLFTLLESPVATPGSGEKAEVANEP-PIEISLENLSFRYPDGKPALSDLNLTI 344
Query: 384 FHGMRVAVCGTVGSGKSSCLSCILGGVPKESGIIRLCGTK-------------AYVAQSP 430
G A+ G G+GKS+ L+ +LG + G IR+ G ++V+Q+P
Sbjct: 345 KAGQLTALVGASGAGKSTLLNLLLGFLAPTQGEIRVNGIDLRDLSPEAWRKQISWVSQNP 404
Query: 431 WIQSGKIEENILFGKEMD-RERYERVLEACSLKKDLEVLPFGDQTIIGERGINLSGGQKQ 489
++ +G I ENIL + E L+ L + + P G T+IGE G LSGGQ Q
Sbjct: 405 YLFAGTIRENILLARPDASDEEIIAALDQAGLLEFVPK-PDGLDTVIGEGGAGLSGGQAQ 463
Query: 490 RIQIARPLYQDADIFLLDDPFSPVDDHTGAHLFKFCW-VSSSKTVIYATHQVEFLPAADL 548
R+ +AR L A + LLD+P + +D T + + ++ KTV+ TH++E AD
Sbjct: 464 RLALARALLSPASLLLLDEPTAHLDAETEQIILQALQELAKQKTVLVITHRLEDAADADR 523
Query: 549 ILVIKDGKITQAGKYSDILNSGTDFMELVGAHK 581
I+V+ +G++ + G + ++ + L+ +
Sbjct: 524 IVVLDNGRLVEQGTHEELSEKQGLYANLLKQQE 556
|
Length = 559 |
| >gnl|CDD|182733 PRK10790, PRK10790, putative multidrug transporter membrane\ATP-binding components; Provisional | Back alignment and domain information |
|---|
Score = 139 bits (353), Expect = 3e-34
Identities = 133/533 (24%), Positives = 240/533 (45%), Gaps = 105/533 (19%)
Query: 692 VAKDVNPAVGASTLIIVYVGAGYKTA------TQLFNKMHVCI------------FRAPM 733
VAK P + L YVG A + LFN+ V + R P+
Sbjct: 54 VAKGNLPLGLVAGLAAAYVGLQLLAAGLHYAQSLLFNRAAVGVVQQLRTDVMDAALRQPL 113
Query: 734 YFFDSTPSGRILNRVS---ENVKWADQSAADMDIPYDIGAFAFSMIQLLG-IIVVMSLVA 789
FD+ P G++++RV+ E ++ D+ + A L+G ++V M +
Sbjct: 114 SAFDTQPVGQLISRVTNDTEVIR---------DLYVTVVATVLRSAALIGAMLVAMFSLD 164
Query: 790 WQV----LIVFVPVIATFIWYQQYYITSTRELSRLIGVCKAPVIQQFSETISGSTTIRSL 845
W++ +++F V+ + YQ+Y R + + A + F+E I+G + I+
Sbjct: 165 WRMALVAIMIFPAVLVVMVIYQRYSTPIVRRVRAYL----ADINDGFNEVINGMSVIQQF 220
Query: 846 DQELRFRDTNMKLIDEYSRPKFHIAGAMEWLRF-------CIDMLSS-------ITFAFS 891
Q+ RF + + E SR H M+ LR + + S+ + F FS
Sbjct: 221 RQQARFG----ERMGEASRS--HYMARMQTLRLDGFLLRPLLSLFSALILCGLLMLFGFS 274
Query: 892 LAFLISVPNGIIHPYKN----LERKII---SVERILQCACIPSEPAL-VIEATKP---NN 940
+ I V G+++ + + L +I + + +LQ A + E +++ + N+
Sbjct: 275 ASGTIEV--GVLYAFISYLGRLNEPLIELTTQQSMLQQAVVAGERVFELMDGPRQQYGND 332
Query: 941 SRP-SHGEVNIRHLQVRYAPNLPLV--------------LRGRTGSGKSTLIQTLFRIVE 985
RP G ++I ++ Y + ++ L G TGSGKSTL L
Sbjct: 333 DRPLQSGRIDIDNVSFAYRDDNLVLQNINLSVPSRGFVALVGHTGSGKSTLASLLMGYYP 392
Query: 986 STAGHILIDGKDISLIGLHDLRTRLSIIPQDPTMFEGTTRSNLDPLEEHADEQIWEALDK 1045
T G I +DG+ +S + LR ++++ QDP + T +N+ + ++EQ+W+AL+
Sbjct: 393 LTEGEIRLDGRPLSSLSHSVLRQGVAMVQQDPVVLADTFLANVTLGRDISEEQVWQALET 452
Query: 1046 CQLGDEVRKKKGKLDS----QG--------------RVLLKKSKVLVLDEATASVDTATD 1087
QL + R L + QG RVL++ ++L+LDEATA++D+ T+
Sbjct: 453 VQLAELARSLPDGLYTPLGEQGNNLSVGQKQLLALARVLVQTPQILILDEATANIDSGTE 512
Query: 1088 NQIQQTLRQHFSDCTVVTIAHRITSVLDSAMVLLLNHGLIKEYDSPTKLLENK 1140
IQQ L T+V IAHR+++++++ +L+L+ G E + +LL +
Sbjct: 513 QAIQQALAAVREHTTLVVIAHRLSTIVEADTILVLHRGQAVEQGTHQQLLAAQ 565
|
Length = 592 |
| >gnl|CDD|213218 cd03251, ABCC_MsbA, ATP-binding cassette domain of the bacterial lipid flippase and related proteins, subfamily C | Back alignment and domain information |
|---|
Score = 127 bits (321), Expect = 7e-33
Identities = 74/240 (30%), Positives = 119/240 (49%), Gaps = 28/240 (11%)
Query: 358 IEIIDGSFSWDFSSPNPTLRNINLKVFHGMRVAVCGTVGSGKSSCLSCILGGVPKESGII 417
+E + +F + P LR+I+L + G VA+ G GSGKS+ ++ I +SG I
Sbjct: 1 VEFKNVTFRYP-GDGPPVLRDISLDIPAGETVALVGPSGSGKSTLVNLIPRFYDVDSGRI 59
Query: 418 RLCGTK-------------AYVAQSPWIQSGKIEENILFGK-EMDRERYERVLEACSLKK 463
+ G V+Q ++ + + ENI +G+ RE E A + +
Sbjct: 60 LIDGHDVRDYTLASLRRQIGLVSQDVFLFNDTVAENIAYGRPGATREEVEEAARAANAHE 119
Query: 464 DLEVLPFGDQTIIGERGINLSGGQKQRIQIARPLYQDADIFLLDDPFSPVDDHTG----- 518
+ LP G T+IGERG+ LSGGQ+QRI IAR L +D I +LD+ S +D +
Sbjct: 120 FIMELPEGYDTVIGERGVKLSGGQRQRIAIARALLKDPPILILDEATSALDTESERLVQA 179
Query: 519 --AHLFKFCWVSSSKTVIYATHQVEFLPAADLILVIKDGKITQAGKYSDILNSGTDFMEL 576
L K ++T H++ + AD I+V++DGKI + G + ++L G + +L
Sbjct: 180 ALERLMK------NRTTFVIAHRLSTIENADRIVVLEDGKIVERGTHEELLAQGGVYAKL 233
|
MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 234 |
| >gnl|CDD|213195 cd03228, ABCC_MRP_Like, ATP-binding cassette domain of multidrug resistance protein-like transporters | Back alignment and domain information |
|---|
Score = 124 bits (313), Expect = 1e-32
Identities = 66/213 (30%), Positives = 95/213 (44%), Gaps = 56/213 (26%)
Query: 358 IEIIDGSFSWDFSSPNPTLRNINLKVFHGMRVAVCGTVGSGKSSCLSCILGGVPKESGII 417
IE + SFS+ P P L++++L + G +VA+ G GSGKS+ L +L SG I
Sbjct: 1 IEFKNVSFSYP-GRPKPVLKDVSLTIKPGEKVAIVGPSGSGKSTLLKLLLRLYDPTSGEI 59
Query: 418 RLCGTK-------------AYVAQSPWIQSGKIEENILFGKEMDRERYERVLEACSLKKD 464
+ G AYV Q P++ SG I ENI
Sbjct: 60 LIDGVDLRDLDLESLRKNIAYVPQDPFLFSGTIRENI----------------------- 96
Query: 465 LEVLPFGDQTIIGERGINLSGGQKQRIQIARPLYQDADIFLLDDPFSPVDDHTGAHLFK- 523
LSGGQ+QRI IAR L +D I +LD+ S +D T A + +
Sbjct: 97 ------------------LSGGQRQRIAIARALLRDPPILILDEATSALDPETEALILEA 138
Query: 524 FCWVSSSKTVIYATHQVEFLPAADLILVIKDGK 556
++ KTVI H++ + AD I+V+ DG+
Sbjct: 139 LRALAKGKTVIVIAHRLSTIRDADRIIVLDDGR 171
|
The MRP (Multidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 171 |
| >gnl|CDD|213221 cd03254, ABCC_Glucan_exporter_like, ATP-binding cassette domain of glucan transporter and related proteins, subfamily C | Back alignment and domain information |
|---|
Score = 126 bits (318), Expect = 2e-32
Identities = 68/227 (29%), Positives = 112/227 (49%), Gaps = 21/227 (9%)
Query: 358 IEIIDGSFSWDFSSPNPTLRNINLKVFHGMRVAVCGTVGSGKSSCLSCILGGVPKESGII 417
IE + +FS+D P L++IN + G VA+ G G+GK++ ++ ++ + G I
Sbjct: 3 IEFENVNFSYD--EKKPVLKDINFSIKPGETVAIVGPTGAGKTTLINLLMRFYDPQKGQI 60
Query: 418 RLCGTK-------------AYVAQSPWIQSGKIEENILFGKEMDRERYERVLEACSLKKD 464
+ G V Q ++ SG I ENI G+ + E V+EA
Sbjct: 61 LIDGIDIRDISRKSLRSMIGVVLQDTFLFSGTIMENIRLGRPNATD--EEVIEAAKEAGA 118
Query: 465 ---LEVLPFGDQTIIGERGINLSGGQKQRIQIARPLYQDADIFLLDDPFSPVDDHTGAHL 521
+ LP G T++GE G NLS G++Q + IAR + +D I +LD+ S +D T +
Sbjct: 119 HDFIMKLPNGYDTVLGENGGNLSQGERQLLAIARAMLRDPKILILDEATSNIDTETEKLI 178
Query: 522 FKFCW-VSSSKTVIYATHQVEFLPAADLILVIKDGKITQAGKYSDIL 567
+ + +T I H++ + AD ILV+ DGKI + G + ++L
Sbjct: 179 QEALEKLMKGRTSIIIAHRLSTIKNADKILVLDDGKIIEEGTHDELL 225
|
Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virulence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 229 |
| >gnl|CDD|182732 PRK10789, PRK10789, putative multidrug transporter membrane\ATP-binding components; Provisional | Back alignment and domain information |
|---|
Score = 130 bits (328), Expect = 3e-31
Identities = 83/254 (32%), Positives = 122/254 (48%), Gaps = 20/254 (7%)
Query: 331 RIASFLCLEGLQTDVLEKMPRGNSDTAIEIIDGSFSWDFSSPNPTLRNINLKVFHGMRVA 390
RI + L + D E +P G + + I F++ + +P L N+N + G +
Sbjct: 289 RIRAMLAEAPVVKDGSEPVPEGRGELDVNI--RQFTYPQTD-HPALENVNFTLKPGQMLG 345
Query: 391 VCGTVGSGKSSCLSCILGGVPKESGIIRLCGTK-------------AYVAQSPWIQSGKI 437
+CG GSGKS+ LS I G IR A V+Q+P++ S +
Sbjct: 346 ICGPTGSGKSTLLSLIQRHFDVSEGDIRFHDIPLTKLQLDSWRSRLAVVSQTPFLFSDTV 405
Query: 438 EENILFGK-EMDRERYERVLEACSLKKDLEVLPFGDQTIIGERGINLSGGQKQRIQIARP 496
NI G+ + ++ E V S+ D+ LP G T +GERG+ LSGGQKQRI IAR
Sbjct: 406 ANNIALGRPDATQQEIEHVARLASVHDDILRLPQGYDTEVGERGVMLSGGQKQRISIARA 465
Query: 497 LYQDADIFLLDDPFSPVDDHTGAHLFKFC--WVSSSKTVIYATHQVEFLPAADLILVIKD 554
L +A+I +LDD S VD T + W +TVI + H++ L A ILV++
Sbjct: 466 LLLNAEILILDDALSAVDGRTEHQILHNLRQW-GEGRTVIISAHRLSALTEASEILVMQH 524
Query: 555 GKITQAGKYSDILN 568
G I Q G + +
Sbjct: 525 GHIAQRGNHDQLAQ 538
|
Length = 569 |
| >gnl|CDD|236870 PRK11174, PRK11174, cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed | Back alignment and domain information |
|---|
Score = 129 bits (328), Expect = 5e-31
Identities = 80/270 (29%), Positives = 134/270 (49%), Gaps = 21/270 (7%)
Query: 330 DRIASFLCLEGLQTDVLEKMPRGNSDTAIEIIDGS-FSWDFSSPNPTLRNINLKVFHGMR 388
+ + +FL EK N IE D S D +N + G R
Sbjct: 322 ESLVTFLETPLAHPQQGEKELASNDPVTIEAEDLEILSPDGK---TLAGPLNFTLPAGQR 378
Query: 389 VAVCGTVGSGKSSCLSCILGGVPKESGIIRLCGTK-------------AYVAQSPWIQSG 435
+A+ G G+GK+S L+ +LG +P + G +++ G + ++V Q+P + G
Sbjct: 379 IALVGPSGAGKTSLLNALLGFLPYQ-GSLKINGIELRELDPESWRKHLSWVGQNPQLPHG 437
Query: 436 KIEENILFGK-EMDRERYERVLEACSLKKDLEVLPFGDQTIIGERGINLSGGQKQRIQIA 494
+ +N+L G + E+ ++ LE + + L +LP G T IG++ LS GQ QR+ +A
Sbjct: 438 TLRDNVLLGNPDASDEQLQQALENAWVSEFLPLLPQGLDTPIGDQAAGLSVGQAQRLALA 497
Query: 495 RPLYQDADIFLLDDPFSPVDDHTGAHLFKFCW-VSSSKTVIYATHQVEFLPAADLILVIK 553
R L Q + LLD+P + +D H+ + + S +T + THQ+E L D I V++
Sbjct: 498 RALLQPCQLLLLDEPTASLDAHSEQLVMQALNAASRRQTTLMVTHQLEDLAQWDQIWVMQ 557
Query: 554 DGKITQAGKYSDILNSGTDFMELVGAHKQA 583
DG+I Q G Y+++ +G F L+ AH+Q
Sbjct: 558 DGQIVQQGDYAELSQAGGLFATLL-AHRQE 586
|
Length = 588 |
| >gnl|CDD|227320 COG4987, CydC, ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 128 bits (324), Expect = 1e-30
Identities = 70/239 (29%), Positives = 119/239 (49%), Gaps = 18/239 (7%)
Query: 354 SDTAIEIIDGSFSWDFSSPNPTLRNINLKVFHGMRVAVCGTVGSGKSSCLSCILGGVPKE 413
+ A+E+ + SF++ L+N NL + G +VA+ G GSGKS+ L + G +
Sbjct: 333 TGQALELRNVSFTYP-GQQTKALKNFNLTLAQGEKVAILGRSGSGKSTLLQLLAGAWDPQ 391
Query: 414 SGIIRLCGTK-------------AYVAQSPWIQSGKIEENILFGK-EMDRERYERVLEAC 459
G I L G + + + Q + SG + +N+ + E L+
Sbjct: 392 QGSITLNGVEIASLDEQALRETISVLTQRVHLFSGTLRDNLRLANPDASDEELWAALQQV 451
Query: 460 SLKKDLEVLPFGDQTIIGERGINLSGGQKQRIQIARPLYQDADIFLLDDPFSPVDDHTGA 519
L+K LE P G T +GE G LSGG+++R+ +AR L DA ++LLD+P +D T
Sbjct: 452 GLEKLLESAPDGLNTWLGEGGRRLSGGERRRLALARALLHDAPLWLLDEPTEGLDPITER 511
Query: 520 HLFK--FCWVSSSKTVIYATHQVEFLPAADLILVIKDGKITQAGKYSDILNSGTDFMEL 576
+ F + KT++ TH++ L D I+V+ +GKI + G ++++L + + L
Sbjct: 512 QVLALLFE-HAEGKTLLMVTHRLRGLERMDRIIVLDNGKIIEEGTHAELLANNGRYKRL 569
|
Length = 573 |
| >gnl|CDD|213218 cd03251, ABCC_MsbA, ATP-binding cassette domain of the bacterial lipid flippase and related proteins, subfamily C | Back alignment and domain information |
|---|
Score = 120 bits (302), Expect = 2e-30
Identities = 60/225 (26%), Positives = 103/225 (45%), Gaps = 34/225 (15%)
Query: 948 VNIRHLQVRYAPNLPLVLR---------------GRTGSGKSTLIQTLFRIVESTAGHIL 992
V +++ RY + P VLR G +GSGKSTL+ + R + +G IL
Sbjct: 1 VEFKNVTFRYPGDGPPVLRDISLDIPAGETVALVGPSGSGKSTLVNLIPRFYDVDSGRIL 60
Query: 993 IDGKDISLIGLHDLRTRLSIIPQDPTMFEGTTRSNLD-PLEEHADEQIWEALDKCQLGDE 1051
IDG D+ L LR ++ ++ QD +F T N+ E++ EA +
Sbjct: 61 IDGHDVRDYTLASLRRQIGLVSQDVFLFNDTVAENIAYGRPGATREEVEEAARAANAHEF 120
Query: 1052 VRKKKGKLDSQ------------------GRVLLKKSKVLVLDEATASVDTATDNQIQQT 1093
+ + D+ R LLK +L+LDEAT+++DT ++ +Q
Sbjct: 121 IMELPEGYDTVIGERGVKLSGGQRQRIAIARALLKDPPILILDEATSALDTESERLVQAA 180
Query: 1094 LRQHFSDCTVVTIAHRITSVLDSAMVLLLNHGLIKEYDSPTKLLE 1138
L + + T IAHR++++ ++ +++L G I E + +LL
Sbjct: 181 LERLMKNRTTFVIAHRLSTIENADRIVVLEDGKIVERGTHEELLA 225
|
MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 234 |
| >gnl|CDD|213220 cd03253, ABCC_ATM1_transporter, ATP-binding cassette domain of iron-sulfur clusters transporter, subfamily C | Back alignment and domain information |
|---|
Score = 120 bits (302), Expect = 3e-30
Identities = 71/234 (30%), Positives = 116/234 (49%), Gaps = 17/234 (7%)
Query: 358 IEIIDGSFSWDFSSPNPTLRNINLKVFHGMRVAVCGTVGSGKSSCLSCILGGVPKESGII 417
IE + +F++D P L++++ + G +VA+ G GSGKS+ L + SG I
Sbjct: 1 IEFENVTFAYDPG--RPVLKDVSFTIPAGKKVAIVGPSGSGKSTILRLLFRFYDVSSGSI 58
Query: 418 RLCGTK-------------AYVAQSPWIQSGKIEENILFGK-EMDRERYERVLEACSLKK 463
+ G V Q + + I NI +G+ + E +A +
Sbjct: 59 LIDGQDIREVTLDSLRRAIGVVPQDTVLFNDTIGYNIRYGRPDATDEEVIEAAKAAQIHD 118
Query: 464 DLEVLPFGDQTIIGERGINLSGGQKQRIQIARPLYQDADIFLLDDPFSPVDDHTGAHLFK 523
+ P G TI+GERG+ LSGG+KQR+ IAR + ++ I LLD+ S +D HT +
Sbjct: 119 KIMRFPDGYDTIVGERGLKLSGGEKQRVAIARAILKNPPILLLDEATSALDTHTEREIQA 178
Query: 524 -FCWVSSSKTVIYATHQVEFLPAADLILVIKDGKITQAGKYSDILNSGTDFMEL 576
VS +T I H++ + AD I+V+KDG+I + G + ++L G + E+
Sbjct: 179 ALRDVSKGRTTIVIAHRLSTIVNADKIIVLKDGRIVERGTHEELLAKGGLYAEM 232
|
ATM1 is an ABC transporter that is expressed in the mitochondria. Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 236 |
| >gnl|CDD|213216 cd03249, ABC_MTABC3_MDL1_MDL2, ATP-binding cassette domain of a mitochondrial protein MTABC3 and related proteins | Back alignment and domain information |
|---|
Score = 118 bits (297), Expect = 1e-29
Identities = 58/201 (28%), Positives = 108/201 (53%), Gaps = 20/201 (9%)
Query: 967 GRTGSGKSTLIQTLFRIVESTAGHILIDGKDISLIGLHDLRTRLSIIPQDPTMFEGTTRS 1026
G +G GKST++ L R + T+G IL+DG DI + L LR+++ ++ Q+P +F+GT
Sbjct: 36 GSSGCGKSTVVSLLERFYDPTSGEILLDGVDIRDLNLRWLRSQIGLVSQEPVLFDGTIAE 95
Query: 1027 NLD-PLEEHADEQIWEALDKCQLGDEVRKKKGKLDSQ------------------GRVLL 1067
N+ + DE++ EA K + D + D+ R LL
Sbjct: 96 NIRYGKPDATDEEVEEAAKKANIHDFIMSLPDGYDTLVGERGSQLSGGQKQRIAIARALL 155
Query: 1068 KKSKVLVLDEATASVDTATDNQIQQTLRQHFSDCTVVTIAHRITSVLDSAMVLLLNHGLI 1127
+ K+L+LDEAT+++D ++ +Q+ L + T + IAHR++++ ++ ++ +L +G +
Sbjct: 156 RNPKILLLDEATSALDAESEKLVQEALDRAMKGRTTIVIAHRLSTIRNADLIAVLQNGQV 215
Query: 1128 KEYDSPTKLLENKSSSFAQLV 1148
E + +L+ K +A+LV
Sbjct: 216 VEQGTHDELMAQK-GVYAKLV 235
|
MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another. Length = 238 |
| >gnl|CDD|227320 COG4987, CydC, ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 124 bits (314), Expect = 2e-29
Identities = 80/377 (21%), Positives = 136/377 (36%), Gaps = 76/377 (20%)
Query: 830 QQFSETISGSTTIRSLDQELRFRDTNMKLID---EYSRPKFHIAGAMEWLRFCIDMLSSI 886
QF++ + G + E +R + R + G + + I L I
Sbjct: 199 SQFTDWVQGQAELLIFGAEDAYRTALEATEASWLKAQRKQARFTGLSDAILLLIAGLLVI 258
Query: 887 --------------------------TFAFSLAFLISVPNGIIHPYKNLERKIISVERIL 920
FA AF P H L + I S R+
Sbjct: 259 GLLLWMAAQVGAGALAQPGAALALLVIFAALEAFEPLAPGAFQH----LGQVIASARRLN 314
Query: 921 QCACIPSEPALVIEATKPNNSRPSHGEVNI--RHLQVRYAPNLPLVLR------------ 966
I + V + + + + R++ Y L+
Sbjct: 315 D---ILDQKPEV----TFPDEQTATTGQALELRNVSFTYPGQQTKALKNFNLTLAQGEKV 367
Query: 967 ---GRTGSGKSTLIQTLFRIVESTAGHILIDGKDISLIGLHDLRTRLSIIPQDPTMFEGT 1023
GR+GSGKSTL+Q L + G I ++G +I+ + LR +S++ Q +F GT
Sbjct: 368 AILGRSGSGKSTLLQLLAGAWDPQQGSITLNGVEIASLDEQALRETISVLTQRVHLFSGT 427
Query: 1024 TRSNLDPLEEHA-DEQIWEALDKCQLGDEVRKKKGKLDSQ------------------GR 1064
R NL A DE++W AL + L + L++ R
Sbjct: 428 LRDNLRLANPDASDEELWAALQQVGLEKLLESAPDGLNTWLGEGGRRLSGGERRRLALAR 487
Query: 1065 VLLKKSKVLVLDEATASVDTATDNQIQQTLRQHFSDCTVVTIAHRITSVLDSAMVLLLNH 1124
LL + + +LDE T +D T+ Q+ L +H T++ + HR+ + +++L++
Sbjct: 488 ALLHDAPLWLLDEPTEGLDPITERQVLALLFEHAEGKTLLMVTHRLRGLERMDRIIVLDN 547
Query: 1125 GLIKEYDSPTKLLENKS 1141
G I E + +LL N
Sbjct: 548 GKIIEEGTHAELLANNG 564
|
Length = 573 |
| >gnl|CDD|130261 TIGR01193, bacteriocin_ABC, ABC-type bacteriocin transporter | Back alignment and domain information |
|---|
Score = 125 bits (315), Expect = 3e-29
Identities = 77/270 (28%), Positives = 132/270 (48%), Gaps = 19/270 (7%)
Query: 324 QAKVPLDRIASFLCLEGLQTDVLEKMPRGNSDTAIEIIDGSFSWDFSSPNPTLRNINLKV 383
A+V +R+ ++ + ++ N + I I D S+S+ + S L +I+L +
Sbjct: 440 AARVANNRLNEVYLVDSEFINKKKRTELNNLNGDIVINDVSYSYGYGSN--ILSDISLTI 497
Query: 384 FHGMRVAVCGTVGSGKSSCLSCILGGVPKESGIIRLCGTK-------------AYVAQSP 430
+ + G GSGKS+ ++G SG I L G Y+ Q P
Sbjct: 498 KMNSKTTIVGMSGSGKSTLAKLLVGFFQARSGEILLNGFSLKDIDRHTLRQFINYLPQEP 557
Query: 431 WIQSGKIEENILFGKEMDRERYERVLEACSL---KKDLEVLPFGDQTIIGERGINLSGGQ 487
+I SG I EN+L G + + + + + AC + K D+E +P G QT + E G ++SGGQ
Sbjct: 558 YIFSGSILENLLLGAKENVSQ-DEIWAACEIAEIKDDIENMPLGYQTELSEEGSSISGGQ 616
Query: 488 KQRIQIARPLYQDADIFLLDDPFSPVDDHTGAHLFKFCWVSSSKTVIYATHQVEFLPAAD 547
KQRI +AR L D+ + +LD+ S +D T + KT+I+ H++ +D
Sbjct: 617 KQRIALARALLTDSKVLILDESTSNLDTITEKKIVNNLLNLQDKTIIFVAHRLSVAKQSD 676
Query: 548 LILVIKDGKITQAGKYSDILNSGTDFMELV 577
I+V+ GKI + G + ++L+ + L+
Sbjct: 677 KIIVLDHGKIIEQGSHDELLDRNGFYASLI 706
|
This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc [Protein fate, Protein and peptide secretion and trafficking, Protein fate, Protein modification and repair, Transport and binding proteins, Other]. Length = 708 |
| >gnl|CDD|213216 cd03249, ABC_MTABC3_MDL1_MDL2, ATP-binding cassette domain of a mitochondrial protein MTABC3 and related proteins | Back alignment and domain information |
|---|
Score = 114 bits (289), Expect = 1e-28
Identities = 75/239 (31%), Positives = 119/239 (49%), Gaps = 23/239 (9%)
Query: 358 IEIIDGSFSWDFSSPN-PTLRNINLKVFHGMRVAVCGTVGSGKSSCLSCILGGVPKESGI 416
IE + SF + S P+ P L+ ++L + G VA+ G+ G GKS+ +S + SG
Sbjct: 1 IEFKNVSFRYP-SRPDVPILKGLSLTIPPGKTVALVGSSGCGKSTVVSLLERFYDPTSGE 59
Query: 417 IRLCGTK-------------AYVAQSPWIQSGKIEENILFGK-EMDRERYERVLEACSLK 462
I L G V+Q P + G I ENI +GK + E E + ++
Sbjct: 60 ILLDGVDIRDLNLRWLRSQIGLVSQEPVLFDGTIAENIRYGKPDATDEEVEEAAKKANIH 119
Query: 463 KDLEVLPFGDQTIIGERGINLSGGQKQRIQIARPLYQDADIFLLDDPFSPVDDHTGA--- 519
+ LP G T++GERG LSGGQKQRI IAR L ++ I LLD+ S +D +
Sbjct: 120 DFIMSLPDGYDTLVGERGSQLSGGQKQRIAIARALLRNPKILLLDEATSALDAESEKLVQ 179
Query: 520 -HLFKFCWVSSSKTVIYATHQVEFLPAADLILVIKDGKITQAGKYSDILNSGTDFMELV 577
L + +T I H++ + ADLI V+++G++ + G + +++ + +LV
Sbjct: 180 EALDR---AMKGRTTIVIAHRLSTIRNADLIAVLQNGQVVEQGTHDELMAQKGVYAKLV 235
|
MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another. Length = 238 |
| >gnl|CDD|234189 TIGR03375, type_I_sec_LssB, type I secretion system ATPase, LssB family | Back alignment and domain information |
|---|
Score = 122 bits (308), Expect = 2e-28
Identities = 75/249 (30%), Positives = 115/249 (46%), Gaps = 16/249 (6%)
Query: 324 QAKVPLDRIASFLCLEGLQTDVLEKMPRGNSDTAIEIIDGSFSWDFSSPNPTLRNINLKV 383
QAK L + + L + + + R IE + SF++ P L N++L +
Sbjct: 430 QAKTALQSLDELMQLPVERPEGTRFLHRPRLQGEIEFRNVSFAYPGQET-PALDNVSLTI 488
Query: 384 FHGMRVAVCGTVGSGKSSCLSCILGGVPKESGIIRLCGTKA-------------YVAQSP 430
G +VA+ G +GSGKS+ L +LG G + L G YV Q P
Sbjct: 489 RPGEKVAIIGRIGSGKSTLLKLLLGLYQPTEGSVLLDGVDIRQIDPADLRRNIGYVPQDP 548
Query: 431 WIQSGKIEENILFGK-EMDRERYERVLEACSLKKDLEVLPFGDQTIIGERGINLSGGQKQ 489
+ G + +NI G D E R E + + + P G IGERG +LSGGQ+Q
Sbjct: 549 RLFYGTLRDNIALGAPYADDEEILRAAELAGVTEFVRRHPDGLDMQIGERGRSLSGGQRQ 608
Query: 490 RIQIARPLYQDADIFLLDDPFSPVDDHTGAHLFKFC-WVSSSKTVIYATHQVEFLPAADL 548
+ +AR L +D I LLD+P S +D+ + + KT++ TH+ L D
Sbjct: 609 AVALARALLRDPPILLLDEPTSAMDNRSEERFKDRLKRWLAGKTLVLVTHRTSLLDLVDR 668
Query: 549 ILVIKDGKI 557
I+V+ +G+I
Sbjct: 669 IIVMDNGRI 677
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export [Protein fate, Protein and peptide secretion and trafficking, Cellular processes, Pathogenesis]. Length = 694 |
| >gnl|CDD|234357 TIGR03797, NHLM_micro_ABC2, NHLM bacteriocin system ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 119 bits (300), Expect = 2e-27
Identities = 137/582 (23%), Positives = 225/582 (38%), Gaps = 88/582 (15%)
Query: 65 RLTALRLAKVLFFSAWQEILFIAILALLYTLATYVGPY----LIDNFVQYLNGRQAFEYE 120
L L + A +++L I + LL TL + P LI + + +
Sbjct: 120 ALGLRDLLRFALRGARRDLLAILAMGLLGTLLGMLVPIATGILIGTAIPDADRSLLVQIA 179
Query: 121 GYVLCLSERHWFFQ-VQQFGI-----RFRATLFAMIYNKGLTLSGQAKQGNTSGEIINLI 174
+L + FQ Q + R A+L A ++++ L L + ++G++ +
Sbjct: 180 LALLAAAVGAAAFQLAQSLAVLRLETRMDASLQAAVWDRLLRLPVSFFRQYSTGDLASRA 239
Query: 175 -AVDAER---------------------ALLILY-KKLGLASIATLLATAIVMLANFPLG 211
+ R L+ Y KL L ++A L V L LG
Sbjct: 240 MGISQIRRILSGSTLTTLLSGIFALLNLGLMFYYSWKLALVAVALALVAIAVTLV---LG 296
Query: 212 RLREKFQDKFMETKDRRIKATSEILRNMRILKLQGWELKKNETAWLKKSVYTEAMISFFC 271
L+ + + + +E + T +++ + L++ G E + W K ++
Sbjct: 297 LLQVRKERRLLELSGKISGLTVQLINGISKLRVAGAE-NRAFARWAKL--FSRQRKLELS 353
Query: 272 WGA------------PTFVSVVTFGSCILL--GIPLESGMILSALTTFKILQEPIYYLPE 317
P S F + I L G L G L+ T F + L
Sbjct: 354 AQRIENLLTVFNAVLPVLTSAALFAAAISLLGGAGLSLGSFLAFNTAFGSFSGAVTQLSN 413
Query: 318 SISMMIQAKVPL-DRIASFLCLEGLQTDVLEKMPRGNSDTAIEIIDGSFSWDFSSPNPTL 376
++ ++ +PL +R L E L K G AIE+ +F + P L
Sbjct: 414 TLISILAV-IPLWERAKPIL--EALPEVDEAKTDPGKLSGAIEVDRVTFRYRPDGP-LIL 469
Query: 377 RNINLKVFHGMRVAVCGTVGSGKSSCLSCILGGVPKESGII----------------RLC 420
+++L++ G VA+ G GSGKS+ L +LG ESG + R
Sbjct: 470 DDVSLQIEPGEFVAIVGPSGSGKSTLLRLLLGFETPESGSVFYDGQDLAGLDVQAVRRQL 529
Query: 421 GTKAYVAQSPWIQSGKIEENILFGKEMDRERYERVLEACSLKKDLEVLPFGDQTIIGERG 480
G V Q+ + SG I ENI G + + L +D+ +P G T+I E G
Sbjct: 530 GV---VLQNGRLMSGSIFENIAGGAPLTLDEAWEAARMAGLAEDIRAMPMGMHTVISEGG 586
Query: 481 INLSGGQKQRIQIARPLYQDADIFLLDDPFSPVDDHTGAHLFKFCWVSSSKTVIYAT--- 537
LSGGQ+QR+ IAR L + I L D+ S +D+ T A VS S + T
Sbjct: 587 GTLSGGQRQRLLIARALVRKPRILLFDEATSALDNRTQAI------VSESLERLKVTRIV 640
Query: 538 --HQVEFLPAADLILVIKDGKITQAGKYSDILNSGTDFMELV 577
H++ + AD I V+ G++ Q G Y +++ F +L
Sbjct: 641 IAHRLSTIRNADRIYVLDAGRVVQQGTYDELMAREGLFAQLA 682
|
Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal leader sequence cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, members of protein families related to nitrile hydratase alpha subunit or to nif11 have undergone paralogous family expansions, with members possessing a putative bacteriocin cleavage region ending with a classic Gly-Gly motif. Those sets of putative bacteriocins, members of this protein family and its partners TIGR03794 and TIGR03796, and cyclodehydratase/docking scaffold fusion proteins of thiazole/oxazole biosynthesis frequently show correlated species distribution and co-clustering within many of those genomes [Transport and binding proteins, Amino acids, peptides and amines, Cellular processes, Biosynthesis of natural products]. Length = 686 |
| >gnl|CDD|200134 TIGR01842, type_I_sec_PrtD, type I secretion system ABC transporter, PrtD family | Back alignment and domain information |
|---|
Score = 115 bits (290), Expect = 2e-26
Identities = 87/295 (29%), Positives = 132/295 (44%), Gaps = 37/295 (12%)
Query: 297 MILSALTTFKILQEPIYYLPESISMMIQAKVPLDRIASFLCLEGLQTDVLEKMPRGNSDT 356
MI ++ + L PI A+ R+ L + + +P
Sbjct: 260 MIAGSILVGRALA-PIDGAIGGWKQFSGARQAYKRLNELLANYPSRDPAM-PLPEPEGHL 317
Query: 357 AIEIIDGSFSWDFSSPN---PTLRNINLKVFHGMRVAVCGTVGSGKSSCLSCILGGVPKE 413
++E + P PTLR I+ + G +A+ G GSGKS+ I+G P
Sbjct: 318 SVENVT------IVPPGGKKPTLRGISFSLQAGEALAIIGPSGSGKSTLARLIVGIWPPT 371
Query: 414 SGIIRLCG-------------TKAYVAQSPWIQSGKIEENIL-FGKEMDRERYERVLEAC 459
SG +RL G Y+ Q + G + ENI FG+ D E+ ++EA
Sbjct: 372 SGSVRLDGADLKQWDRETFGKHIGYLPQDVELFPGTVAENIARFGENADPEK---IIEAA 428
Query: 460 SLKKDLEV---LPFGDQTIIGERGINLSGGQKQRIQIARPLYQDADIFLLDDPFSPVDDH 516
L E+ LP G T+IG G LSGGQ+QRI +AR LY D + +LD+P S +D+
Sbjct: 429 KLAGVHELILRLPDGYDTVIGPGGATLSGGQRQRIALARALYGDPKLVVLDEPNSNLDEE 488
Query: 517 TGAHLFKFCWVSSSK----TVIYATHQVEFLPAADLILVIKDGKITQAGKYSDIL 567
L + + K TV+ TH+ L D ILV++DG+I + G+ ++L
Sbjct: 489 GEQALANA--IKALKARGITVVVITHRPSLLGCVDKILVLQDGRIARFGERDEVL 541
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion [Protein fate, Protein and peptide secretion and trafficking]. Length = 544 |
| >gnl|CDD|131258 TIGR02203, MsbA_lipidA, lipid A export permease/ATP-binding protein MsbA | Back alignment and domain information |
|---|
Score = 114 bits (287), Expect = 4e-26
Identities = 71/213 (33%), Positives = 111/213 (52%), Gaps = 22/213 (10%)
Query: 374 PTLRNINLKVFHGMRVAVCGTVGSGKSSCLSCILGGVPKESGIIRLCGTK---------- 423
P L +I+L + G VA+ G GSGKS+ ++ I +SG I L G
Sbjct: 346 PALDSISLVIEPGETVALVGRSGSGKSTLVNLIPRFYEPDSGQILLDGHDLADYTLASLR 405
Query: 424 ---AYVAQSPWIQSGKIEENILFGK--EMDRERYERVLEACSLKKDLEVLPFGDQTIIGE 478
A V+Q + + I NI +G+ + DR ER L A + ++ LP G T IGE
Sbjct: 406 RQVALVSQDVVLFNDTIANNIAYGRTEQADRAEIERALAAAYAQDFVDKLPLGLDTPIGE 465
Query: 479 RGINLSGGQKQRIQIARPLYQDADIFLLDDPFSPVDD----HTGAHLFKFCWVSSSKTVI 534
G+ LSGGQ+QR+ IAR L +DA I +LD+ S +D+ A L + + +T +
Sbjct: 466 NGVLLSGGQRQRLAIARALLKDAPILILDEATSALDNESERLVQAALER---LMQGRTTL 522
Query: 535 YATHQVEFLPAADLILVIKDGKITQAGKYSDIL 567
H++ + AD I+V+ DG+I + G ++++L
Sbjct: 523 VIAHRLSTIEKADRIVVMDDGRIVERGTHNELL 555
|
This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes [Cell envelope, Biosynthesis and degradation of surface polysaccharides and lipopolysaccharides, Transport and binding proteins, Other]. Length = 571 |
| >gnl|CDD|213212 cd03245, ABCC_bacteriocin_exporters, ATP-binding cassette domain of bacteriocin exporters, subfamily C | Back alignment and domain information |
|---|
Score = 106 bits (268), Expect = 5e-26
Identities = 62/183 (33%), Positives = 96/183 (52%), Gaps = 25/183 (13%)
Query: 967 GRTGSGKSTLIQTLFRIVESTAGHILIDGKDISLIGLHDLRTRLSIIPQDPTMFEGTTRS 1026
GR GSGKSTL++ L + + T+G +L+DG DI + DLR + +PQD T+F GT R
Sbjct: 37 GRVGSGKSTLLKLLAGLYKPTSGSVLLDGTDIRQLDPADLRRNIGYVPQDVTLFYGTLRD 96
Query: 1027 NL---DPLEEHADEQIWEALDKCQLGDEVRKKKGKLDSQ------------------GRV 1065
N+ P DE+I A + + D V K LD Q R
Sbjct: 97 NITLGAP--LADDERILRAAELAGVTDFVNKHPNGLDLQIGERGRGLSGGQRQAVALARA 154
Query: 1066 LLKKSKVLVLDEATASVDTATDNQIQQTLRQHFSDCTVVTIAHRITSVLDSA-MVLLLNH 1124
LL +L+LDE T+++D ++ ++++ LRQ D T++ I HR S+LD +++++
Sbjct: 155 LLNDPPILLLDEPTSAMDMNSEERLKERLRQLLGDKTLIIITHR-PSLLDLVDRIIVMDS 213
Query: 1125 GLI 1127
G I
Sbjct: 214 GRI 216
|
Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane. Length = 220 |
| >gnl|CDD|213192 cd03225, ABC_cobalt_CbiO_domain1, First domain of the ATP-binding cassette component of cobalt transport system | Back alignment and domain information |
|---|
Score = 106 bits (268), Expect = 5e-26
Identities = 68/219 (31%), Positives = 96/219 (43%), Gaps = 39/219 (17%)
Query: 364 SFSWDFSSPNPTLRNINLKVFHGMRVAVCGTVGSGKSSCLSCILGGVPKESGIIRLCGTK 423
SFS+ P L +I+L + G V + G GSGKS+ L + G + SG + + G K
Sbjct: 6 SFSYP-DGARPALDDISLTIKKGEFVLIVGPNGSGKSTLLRLLNGLLGPTSGEVLVDG-K 63
Query: 424 AYVAQSPWIQSGKI----------------EENILFG-------KEMDRERYERVLEACS 460
S K+ EE + FG +E ER E LE
Sbjct: 64 DLTKLSLKELRRKVGLVFQNPDDQFFGPTVEEEVAFGLENLGLPEEEIEERVEEALELVG 123
Query: 461 LKKDLEVLPFGDQTIIGERGINLSGGQKQRIQIARPLYQDADIFLLDDPFSPVDDHTGAH 520
L+ + PF LSGGQKQR+ IA L D DI LLD+P + +D
Sbjct: 124 LEGLRDRSPF-----------TLSGGQKQRVAIAGVLAMDPDILLLDEPTAGLDPAGRRE 172
Query: 521 LFKFC--WVSSSKTVIYATHQVEFLPA-ADLILVIKDGK 556
L + + KT+I TH ++ L AD ++V++DGK
Sbjct: 173 LLELLKKLKAEGKTIIIVTHDLDLLLELADRVIVLEDGK 211
|
Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems. Length = 211 |
| >gnl|CDD|234041 TIGR02868, CydC, thiol reductant ABC exporter, CydC subunit | Back alignment and domain information |
|---|
Score = 113 bits (285), Expect = 6e-26
Identities = 61/197 (30%), Positives = 90/197 (45%), Gaps = 17/197 (8%)
Query: 358 IEIIDGSFSWDFSSPNPTLRNINLKVFHGMRVAVCGTVGSGKSSCLSCILGGVPKESGII 417
+E+ D S + + P L ++L + G RVA+ G GSGKS+ L+ + G + G +
Sbjct: 335 LELRDLSAGYPGA--PPVLDGVSLDLPPGERVAILGPSGSGKSTLLATLAGLLDPLQGEV 392
Query: 418 RLCGTKA-------------YVAQSPWIQSGKIEENILFGK-EMDRERYERVLEACSLKK 463
L G AQ + + EN+ + + E LE L
Sbjct: 393 TLDGVPVSSLDQDEVRRRVSVCAQDAHLFDTTVRENLRLARPDATDEELWAALERVGLAD 452
Query: 464 DLEVLPFGDQTIIGERGINLSGGQKQRIQIARPLYQDADIFLLDDPFSPVDDHTGAHLFK 523
L LP G T++GE G LSGG++QR+ +AR L DA I LLD+P +D T L +
Sbjct: 453 WLRALPDGLDTVLGEGGARLSGGERQRLALARALLADAPILLLDEPTEHLDAETADELLE 512
Query: 524 FCW-VSSSKTVIYATHQ 539
S +TV+ TH
Sbjct: 513 DLLAALSGRTVVLITHH 529
|
The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex. Length = 530 |
| >gnl|CDD|213211 cd03244, ABCC_MRP_domain2, ATP-binding cassette domain 2 of multidrug resistance-associated protein | Back alignment and domain information |
|---|
Score = 106 bits (267), Expect = 9e-26
Identities = 68/210 (32%), Positives = 106/210 (50%), Gaps = 28/210 (13%)
Query: 373 NPTLRNINLKVFHGMRVAVCGTVGSGKSSCLSCILGGVPKESGIIRLCG---TK------ 423
P L+NI+ + G +V + G GSGKSS L + V SG I + G +K
Sbjct: 17 PPVLKNISFSIKPGEKVGIVGRTGSGKSSLLLALFRLVELSSGSILIDGVDISKIGLHDL 76
Query: 424 ----AYVAQSPWIQSGKIEENI-LFGKEMDRERYERVLEACSLKKDLEVLPFGDQTIIGE 478
+ + Q P + SG I N+ FG+ D E ++ LE LK+ +E LP G T++ E
Sbjct: 77 RSRISIIPQDPVLFSGTIRSNLDPFGEYSDEELWQ-ALERVGLKEFVESLPGGLDTVVEE 135
Query: 479 RGINLSGGQKQRIQIARPLYQDADIFLLDDPFSPVDDHTGAHL-------FKFCWVSSSK 531
G NLS GQ+Q + +AR L + + I +LD+ + VD T A + FK C
Sbjct: 136 GGENLSVGQRQLLCLARALLRKSKILVLDEATASVDPETDALIQKTIREAFKDC------ 189
Query: 532 TVIYATHQVEFLPAADLILVIKDGKITQAG 561
TV+ H+++ + +D ILV+ G++ +
Sbjct: 190 TVLTIAHRLDTIIDSDRILVLDKGRVVEFD 219
|
The ABC subfamily C is also known as MRP (multidrug resistance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate. Length = 221 |
| >gnl|CDD|184214 PRK13657, PRK13657, cyclic beta-1,2-glucan ABC transporter; Provisional | Back alignment and domain information |
|---|
Score = 112 bits (283), Expect = 1e-25
Identities = 63/204 (30%), Positives = 103/204 (50%), Gaps = 30/204 (14%)
Query: 965 LRGRTGSGKSTLIQTLFRIVESTAGHILIDGKDISLIGLHDLRTRLSIIPQDPTMFEGTT 1024
+ G TG+GKSTLI L R+ + +G ILIDG DI + LR ++++ QD +F +
Sbjct: 366 IVGPTGAGKSTLINLLQRVFDPQSGRILIDGTDIRTVTRASLRRNIAVVFQDAGLFNRSI 425
Query: 1025 RSNLDPLEEHA-DEQIWEALDKCQLGDEVRKKKGKLD----------SQG--------RV 1065
N+ A DE++ A ++ Q D + +K D S G R
Sbjct: 426 EDNIRVGRPDATDEEMRAAAERAQAHDFIERKPDGYDTVVGERGRQLSGGERQRLAIARA 485
Query: 1066 LLKKSKVLVLDEATASVDTATDNQIQQTLRQHFSDCTVVTIAHRITSVLDSAMVLLLNHG 1125
LLK +L+LDEAT+++D T+ +++ L + T IAHR+++V ++ +L+ ++G
Sbjct: 486 LLKDPPILILDEATSALDVETEAKVKAALDELMKGRTTFIIAHRLSTVRNADRILVFDNG 545
Query: 1126 LIKEYDSPTKLLENKSSSFAQLVA 1149
+ E S SF +LVA
Sbjct: 546 RVVE-----------SGSFDELVA 558
|
Length = 588 |
| >gnl|CDD|130261 TIGR01193, bacteriocin_ABC, ABC-type bacteriocin transporter | Back alignment and domain information |
|---|
Score = 112 bits (282), Expect = 3e-25
Identities = 116/495 (23%), Positives = 214/495 (43%), Gaps = 101/495 (20%)
Query: 728 IFRAPMYFFDSTPSGRILNRVSENVKWADQSAADMDIPYDIGAFAFSMIQL---LGIIVV 784
+F PM FF + +G I++R + D S+ I A A +++ L + I+V+
Sbjct: 239 LFELPMSFFSTRRTGEIVSRFT------DASSI-------IDALASTILSLFLDMWILVI 285
Query: 785 MSLV-AWQVLIVF------VPVIATFIW-YQQYYITSTRELSRLIGVCKAPVIQQFSETI 836
+ L Q +++F +PV A I +++ + + + V + +I E +
Sbjct: 286 VGLFLVRQNMLLFLLSLLSIPVYAVIIILFKRTFNKLNHDAMQANAVLNSSII----EDL 341
Query: 837 SGSTTIRSLDQELRFRDTNMKLID----EYSRPKFHI----------------------- 869
+G TI+SL E ID +Y F
Sbjct: 342 NGIETIKSLTSE----AERYSKIDSEFGDYLNKSFKYQKADQGQQAIKAVTKLILNVVIL 397
Query: 870 -AGAMEWLRFCIDMLSSITFAFSLAFLISVPNGIIHPYKNLERKIISVERILQCACIPSE 928
GA +R + + ITF L++ ++ II+ L+ ++ R+ + + SE
Sbjct: 398 WTGAYLVMRGKLTLGQLITFNALLSYFLTPLENIINLQPKLQAARVANNRLNEVYLVDSE 457
Query: 929 PALVIEATKPNNSRPSHGEVNIRHLQVRYAPNLP--------------LVLRGRTGSGKS 974
I K +G++ I + Y + G +GSGKS
Sbjct: 458 ---FINKKKRTELNNLNGDIVINDVSYSYGYGSNILSDISLTIKMNSKTTIVGMSGSGKS 514
Query: 975 TLIQTLFRIVESTAGHILIDGKDISLIGLHDLRTRLSIIPQDPTMFEGTTRSNL--DPLE 1032
TL + L ++ +G IL++G + I H LR ++ +PQ+P +F G+ NL E
Sbjct: 515 TLAKLLVGFFQARSGEILLNGFSLKDIDRHTLRQFINYLPQEPYIFSGSILENLLLGAKE 574
Query: 1033 EHADEQIWEALDKCQLGDEVRK-------------------KKGKLDSQGRVLLKKSKVL 1073
+ ++IW A + ++ D++ +K ++ + R LL SKVL
Sbjct: 575 NVSQDEIWAACEIAEIKDDIENMPLGYQTELSEEGSSISGGQKQRI-ALARALLTDSKVL 633
Query: 1074 VLDEATASVDTATDNQIQQTLRQHFSDCTVVTIAHRITSVLDSAMVLLLNHGLIKEYDSP 1133
+LDE+T+++DT T+ +I L + D T++ +AHR++ S +++L+HG I E S
Sbjct: 634 ILDESTSNLDTITEKKIVNNL-LNLQDKTIIFVAHRLSVAKQSDKIIVLDHGKIIEQGSH 692
Query: 1134 TKLLENKSSSFAQLV 1148
+LL +++ +A L+
Sbjct: 693 DELL-DRNGFYASLI 706
|
This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc [Protein fate, Protein and peptide secretion and trafficking, Protein fate, Protein modification and repair, Transport and binding proteins, Other]. Length = 708 |
| >gnl|CDD|213219 cd03252, ABCC_Hemolysin, ATP-binding cassette domain of hemolysin B, subfamily C | Back alignment and domain information |
|---|
Score = 105 bits (263), Expect = 3e-25
Identities = 65/220 (29%), Positives = 105/220 (47%), Gaps = 21/220 (9%)
Query: 376 LRNINLKVFHGMRVAVCGTVGSGKSSCLSCILGGVPKESGIIRLCGTKAYVAQSPWIQ-- 433
L NI+L++ G V + G GSGKS+ I E+G + + G +A W++
Sbjct: 18 LDNISLRIKPGEVVGIVGRSGSGKSTLTKLIQRFYVPENGRVLVDGHDLALADPAWLRRQ 77
Query: 434 -----------SGKIEENILFGKE-MDRERYERVLEACSLKKDLEV---LPFGDQTIIGE 478
+ I +NI M ER V+EA L + LP G TI+GE
Sbjct: 78 VGVVLQENVLFNRSIRDNIALADPGMSMER---VIEAAKLAGAHDFISELPEGYDTIVGE 134
Query: 479 RGINLSGGQKQRIQIARPLYQDADIFLLDDPFSPVDDHTGAHLFK-FCWVSSSKTVIYAT 537
+G LSGGQ+QRI IAR L + I + D+ S +D + + + + + +TVI
Sbjct: 135 QGAGLSGGQRQRIAIARALIHNPRILIFDEATSALDYESEHAIMRNMHDICAGRTVIIIA 194
Query: 538 HQVEFLPAADLILVIKDGKITQAGKYSDILNSGTDFMELV 577
H++ + AD I+V++ G+I + G + ++L + L
Sbjct: 195 HRLSTVKNADRIIVMEKGRIVEQGSHDELLAENGLYAYLY 234
|
The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E. coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy. Length = 237 |
| >gnl|CDD|131259 TIGR02204, MsbA_rel, ABC transporter, permease/ATP-binding protein | Back alignment and domain information |
|---|
Score = 110 bits (276), Expect = 1e-24
Identities = 69/220 (31%), Positives = 107/220 (48%), Gaps = 17/220 (7%)
Query: 374 PTLRNINLKVFHGMRVAVCGTVGSGKSSCLSCILGGVPKESGIIRLCGTK---------- 423
P L +NL V G VA+ G G+GKS+ +L +SG I L G
Sbjct: 354 PALDGLNLTVRPGETVALVGPSGAGKSTLFQLLLRFYDPQSGRILLDGVDLRQLDPAELR 413
Query: 424 ---AYVAQSPWIQSGKIEENILFGK-EMDRERYERVLEACSLKKDLEVLPFGDQTIIGER 479
A V Q P + + + ENI +G+ + E E A + + LP G T +GER
Sbjct: 414 ARMALVPQDPVLFAASVMENIRYGRPDATDEEVEAAARAAHAHEFISALPEGYDTYLGER 473
Query: 480 GINLSGGQKQRIQIARPLYQDADIFLLDDPFSPVDDHTGAHLFKFCW--VSSSKTVIYAT 537
G+ LSGGQ+QRI IAR + +DA I LLD+ S +D + L + + +T +
Sbjct: 474 GVTLSGGQRQRIAIARAILKDAPILLLDEATSALDAES-EQLVQQALETLMKGRTTLIIA 532
Query: 538 HQVEFLPAADLILVIKDGKITQAGKYSDILNSGTDFMELV 577
H++ + AD I+V+ G+I G +++++ G + L
Sbjct: 533 HRLATVLKADRIVVMDQGRIVAQGTHAELIAKGGLYARLA 572
|
This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins. Length = 576 |
| >gnl|CDD|224047 COG1122, CbiO, ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 103 bits (259), Expect = 1e-24
Identities = 67/229 (29%), Positives = 101/229 (44%), Gaps = 40/229 (17%)
Query: 369 FSSPN--PTLRNINLKVFHGMRVAVCGTVGSGKSSCLSCILGGVPKESGIIRLCGTKAYV 426
F P L++++L++ G RV + G GSGKS+ L + G + SG + + G
Sbjct: 11 FRYPGRKAALKDVSLEIEKGERVLLIGPNGSGKSTLLKLLNGLLKPTSGEVLVDGLDTSS 70
Query: 427 AQSPWIQSGKI----------------EENILFG-------KEMDRERYERVLEACSLKK 463
+S K+ E+ + FG +E ER LE L++
Sbjct: 71 EKSLLELRQKVGLVFQNPDDQLFGPTVEDEVAFGLENLGLPREEIEERVAEALELVGLEE 130
Query: 464 DLEVLPFGDQTIIGERGINLSGGQKQRIQIARPLYQDADIFLLDDPFSPVDDHTGAHLFK 523
L+ PF NLSGGQKQR+ IA L +I LLD+P + +D L +
Sbjct: 131 LLDRPPF-----------NLSGGQKQRVAIAGVLAMGPEILLLDEPTAGLDPKGRRELLE 179
Query: 524 F---CWVSSSKTVIYATHQVEFLPA-ADLILVIKDGKITQAGKYSDILN 568
KT+I TH +E + AD ++V+ DGKI G ++I N
Sbjct: 180 LLKKLKEEGGKTIIIVTHDLELVLEYADRVVVLDDGKILADGDPAEIFN 228
|
Length = 235 |
| >gnl|CDD|227590 COG5265, ATM1, ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 108 bits (273), Expect = 1e-24
Identities = 59/194 (30%), Positives = 102/194 (52%), Gaps = 19/194 (9%)
Query: 967 GRTGSGKSTLIQTLFRIVESTAGHILIDGKDISLIGLHDLRTRLSIIPQDPTMFEGTTRS 1026
G +G+GKST+++ LFR + +G I IDG+DI + LR + I+PQD +F T
Sbjct: 296 GESGAGKSTILRLLFRFYDVNSGSITIDGQDIRDVTQQSLRRAIGIVPQDTVLFNDTIAY 355
Query: 1027 NLDPLEEHA-DEQIWEALDKCQLGDEVRKKKGKLDSQ------------------GRVLL 1067
N+ A E++ A + Q+ D ++ D+ R +L
Sbjct: 356 NIKYGRPDATAEEVGAAAEAAQIHDFIQSLPEGYDTGVGERGLKLSGGEKQRVAIARTIL 415
Query: 1068 KKSKVLVLDEATASVDTATDNQIQQTLRQHFSDCTVVTIAHRITSVLDSAMVLLLNHGLI 1127
K +L+LDEAT+++DT T+ IQ LR+ + T + IAHR+++++D+ +++L++G I
Sbjct: 416 KNPPILILDEATSALDTHTEQAIQAALREVSAGRTTLVIAHRLSTIIDADEIIVLDNGRI 475
Query: 1128 KEYDSPTKLLENKS 1141
E + +LL
Sbjct: 476 VERGTHEELLAAGG 489
|
Length = 497 |
| >gnl|CDD|213219 cd03252, ABCC_Hemolysin, ATP-binding cassette domain of hemolysin B, subfamily C | Back alignment and domain information |
|---|
Score = 102 bits (255), Expect = 3e-24
Identities = 60/236 (25%), Positives = 116/236 (49%), Gaps = 35/236 (14%)
Query: 948 VNIRHLQVRYAPNLPLVLR---------------GRTGSGKSTLIQTLFRIVESTAGHIL 992
+ H++ RY P+ P++L GR+GSGKSTL + + R G +L
Sbjct: 1 ITFEHVRFRYKPDGPVILDNISLRIKPGEVVGIVGRSGSGKSTLTKLIQRFYVPENGRVL 60
Query: 993 IDGKDISLIGLHDLRTRLSIIPQDPTMFEGTTRSNLDPLEEHAD-EQIWEA--------- 1042
+DG D++L LR ++ ++ Q+ +F + R N+ + E++ EA
Sbjct: 61 VDGHDLALADPAWLRRQVGVVLQENVLFNRSIRDNIALADPGMSMERVIEAAKLAGAHDF 120
Query: 1043 LDKCQLG-DEVRKKKGKLDSQG--------RVLLKKSKVLVLDEATASVDTATDNQIQQT 1093
+ + G D + ++G S G R L+ ++L+ DEAT+++D +++ I +
Sbjct: 121 ISELPEGYDTIVGEQGAGLSGGQRQRIAIARALIHNPRILIFDEATSALDYESEHAIMRN 180
Query: 1094 LRQHFSDCTVVTIAHRITSVLDSAMVLLLNHGLIKEYDSPTKLLENKSSSFAQLVA 1149
+ + TV+ IAHR+++V ++ ++++ G I E S +LL ++ +A L
Sbjct: 181 MHDICAGRTVIIIAHRLSTVKNADRIIVMEKGRIVEQGSHDELLA-ENGLYAYLYQ 235
|
The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E. coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy. Length = 237 |
| >gnl|CDD|234189 TIGR03375, type_I_sec_LssB, type I secretion system ATPase, LssB family | Back alignment and domain information |
|---|
Score = 107 bits (270), Expect = 9e-24
Identities = 67/225 (29%), Positives = 108/225 (48%), Gaps = 41/225 (18%)
Query: 941 SRPS-HGEVNIRHLQVRYAPNLPLVLR---------------GRTGSGKSTLIQTLFRIV 984
RP GE+ R++ Y L GR GSGKSTL++ L +
Sbjct: 456 HRPRLQGEIEFRNVSFAYPGQETPALDNVSLTIRPGEKVAIIGRIGSGKSTLLKLLLGLY 515
Query: 985 ESTAGHILIDGKDISLIGLHDLRTRLSIIPQDPTMFEGTTRSNL---DPLEEHADEQIWE 1041
+ T G +L+DG DI I DLR + +PQDP +F GT R N+ P + DE+I
Sbjct: 516 QPTEGSVLLDGVDIRQIDPADLRRNIGYVPQDPRLFYGTLRDNIALGAPYAD--DEEILR 573
Query: 1042 ALDKCQLGDEVRKKKGKLDSQ------------------GRVLLKKSKVLVLDEATASVD 1083
A + + + VR+ LD Q R LL+ +L+LDE T+++D
Sbjct: 574 AAELAGVTEFVRRHPDGLDMQIGERGRSLSGGQRQAVALARALLRDPPILLLDEPTSAMD 633
Query: 1084 TATDNQIQQTLRQHFSDCTVVTIAHRITSVLDSA-MVLLLNHGLI 1127
++ + + L++ + T+V + HR TS+LD ++++++G I
Sbjct: 634 NRSEERFKDRLKRWLAGKTLVLVTHR-TSLLDLVDRIIVMDNGRI 677
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export [Protein fate, Protein and peptide secretion and trafficking, Cellular processes, Pathogenesis]. Length = 694 |
| >gnl|CDD|226969 COG4618, ArpD, ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only] | Back alignment and domain information |
|---|
Score = 106 bits (268), Expect = 1e-23
Identities = 87/296 (29%), Positives = 135/296 (45%), Gaps = 37/296 (12%)
Query: 297 MILSALTTFKILQEPIYYLPESISMMIQAKVPLDRIASFLCLEGLQTDVLEKMPRGNSDT 356
MI ++ + + L PI + + A+ R+ L + + +P
Sbjct: 278 MIAGSILSGRALA-PIDLAIANWKQFVAARQSYKRLNELLAELPAAAERMP-LPAPQGAL 335
Query: 357 AIEIIDGSFSWDFSSPN---PTLRNINLKVFHGMRVAVCGTVGSGKSSCLSCILGGVPKE 413
++E + + P P L+ I+ + G + + G GSGKS+ ++G P
Sbjct: 336 SVERLT------AAPPGQKKPILKGISFALQAGEALGIIGPSGSGKSTLARLLVGIWPPT 389
Query: 414 SGIIRLCGTK-------------AYVAQSPWIQSGKIEENIL-FGKEMDRERYERVLEAC 459
SG +RL G Y+ Q + G I ENI FG+E D E+ V+EA
Sbjct: 390 SGSVRLDGADLRQWDREQLGRHIGYLPQDVELFDGTIAENIARFGEEADPEK---VIEAA 446
Query: 460 SLKK--DLEV-LPFGDQTIIGERGINLSGGQKQRIQIARPLYQDADIFLLDDPFSPVDDH 516
L +L + LP G T IGE G LSGGQ+QRI +AR LY D + +LD+P S +D
Sbjct: 447 RLAGVHELILRLPQGYDTRIGEGGATLSGGQRQRIALARALYGDPFLVVLDEPNSNLDSE 506
Query: 517 TGAHLFKFCWVSSSK----TVIYATHQVEFLPAADLILVIKDGKITQAGKYSDILN 568
A L + ++K TV+ H+ L + D ILV++DG+I G ++L
Sbjct: 507 GEAALAAA--ILAAKARGGTVVVIAHRPSALASVDKILVLQDGRIAAFGPREEVLA 560
|
Length = 580 |
| >gnl|CDD|233209 TIGR00958, 3a01208, Conjugate Transporter-2 (CT2) Family protein | Back alignment and domain information |
|---|
Score = 106 bits (266), Expect = 2e-23
Identities = 107/416 (25%), Positives = 178/416 (42%), Gaps = 39/416 (9%)
Query: 193 SIATLLATAIVMLANFPLGR----LREKFQDKFMETKDRRIKATSEILRNMRILKLQGWE 248
++ TL+ +V LA G+ L E+ Q+ + +A S + R +R + E
Sbjct: 304 TMVTLINLPLVFLAEKVFGKRYQLLSEELQEAVAKANQVAEEALSGM-RTVRSFAAEEGE 362
Query: 249 LKKNETAWLK-KSVYTEAMI--SFFCW-----GAPTFVSVVTFGSCILLGIPLESGMILS 300
+ + A + + + + + W G V V+ +G ++L + SG ++S
Sbjct: 363 ASRFKEALEETLQLNKRKALAYAGYLWTTSVLGMLIQVLVLYYGGQLVLTGKVSSGNLVS 422
Query: 301 ALTTFKILQEPIYYLPESISMMIQAKVPLDRIASFL----CLEGLQTDVLEKMPRGNSDT 356
L + L E + L S M+QA +++ +L + T + G
Sbjct: 423 FLLYQEQLGEAVRVLSYVYSGMMQAVGASEKVFEYLDRKPNIPLTGTLAPLNL-EGL--- 478
Query: 357 AIEIIDGSFSWDFSSPNPTLRNINLKVFHGMRVAVCGTVGSGKSSCLSCI---------- 406
IE D SFS+ P L+ + + G VA+ G GSGKS+ + +
Sbjct: 479 -IEFQDVSFSYPNRPDVPVLKGLTFTLHPGEVVALVGPSGSGKSTVAALLQNLYQPTGGQ 537
Query: 407 --LGGVPKESGIIRLCGTK-AYVAQSPWIQSGKIEENILFG-KEMDRERYERVLEACSLK 462
L GVP + A V Q P + SG + ENI +G + E +A +
Sbjct: 538 VLLDGVPLVQYDHHYLHRQVALVGQEPVLFSGSVRENIAYGLTDTPDEEIMAAAKAANAH 597
Query: 463 KDLEVLPFGDQTIIGERGINLSGGQKQRIQIARPLYQDADIFLLDDPFSPVDDHTGAHLF 522
+ P G T +GE+G LSGGQKQRI IAR L + + +LD+ S +D L
Sbjct: 598 DFIMEFPNGYDTEVGEKGSQLSGGQKQRIAIARALVRKPRVLILDEATSALDAECEQLLQ 657
Query: 523 KFCWVSS-SKTVIYATHQVEFLPAADLILVIKDGKITQAGKYSDILNSGTDFMELV 577
+ S S+TV+ H++ + AD ILV+K G + + G + ++ + LV
Sbjct: 658 E--SRSRASRTVLLIAHRLSTVERADQILVLKKGSVVEMGTHKQLMEDQGCYKHLV 711
|
[Transport and binding proteins, Other]. Length = 711 |
| >gnl|CDD|131259 TIGR02204, MsbA_rel, ABC transporter, permease/ATP-binding protein | Back alignment and domain information |
|---|
Score = 105 bits (264), Expect = 3e-23
Identities = 61/208 (29%), Positives = 106/208 (50%), Gaps = 21/208 (10%)
Query: 941 SRPSHGEVNIRHLQVRYAPNLPLVLRGRTGSGKSTLIQTLFRIVESTAGHILIDGKDISL 1000
+RP ++ +L VR + LV G +G+GKSTL Q L R + +G IL+DG D+
Sbjct: 349 ARPDQPALDGLNLTVRPGETVALV--GPSGAGKSTLFQLLLRFYDPQSGRILLDGVDLRQ 406
Query: 1001 IGLHDLRTRLSIIPQDPTMFEGTTRSNLDPLEEHA-DEQIWEALDKCQLGDEVRK----- 1054
+ +LR R++++PQDP +F + N+ A DE++ A + +
Sbjct: 407 LDPAELRARMALVPQDPVLFAASVMENIRYGRPDATDEEVEAAARAAHAHEFISALPEGY 466
Query: 1055 -----KKGKLDSQG--------RVLLKKSKVLVLDEATASVDTATDNQIQQTLRQHFSDC 1101
++G S G R +LK + +L+LDEAT+++D ++ +QQ L
Sbjct: 467 DTYLGERGVTLSGGQRQRIAIARAILKDAPILLLDEATSALDAESEQLVQQALETLMKGR 526
Query: 1102 TVVTIAHRITSVLDSAMVLLLNHGLIKE 1129
T + IAHR+ +VL + +++++ G I
Sbjct: 527 TTLIIAHRLATVLKADRIVVMDQGRIVA 554
|
This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins. Length = 576 |
| >gnl|CDD|224041 COG1116, TauB, ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 99 bits (250), Expect = 3e-23
Identities = 65/205 (31%), Positives = 89/205 (43%), Gaps = 41/205 (20%)
Query: 376 LRNINLKVFHGMRVAVCGTVGSGKSSCLSCILGGVPKESGIIRLCGTK--------AYVA 427
L +INL V G VA+ G G GKS+ L I G SG + L G YV
Sbjct: 19 LEDINLSVEKGEFVAILGPSGCGKSTLLRLIAGLEKPTSGEVLLDGRPVTGPGPDIGYVF 78
Query: 428 QS----PWIQSGKIEENILFG-------KEMDRERYERVLEACSLKKDLEVLPFGDQTII 476
Q PW+ + +N+ G K RER + +LE L + P Q
Sbjct: 79 QEDALLPWL---TVLDNVALGLELRGKSKAEARERAKELLELVGLAGFEDKYP--HQ--- 130
Query: 477 GERGINLSGGQKQRIQIARPLYQDADIFLLDDPFSPVDDHTGAHLFKFC---WVSSSKTV 533
LSGG +QR+ IAR L + LLD+PF +D T L W + KTV
Sbjct: 131 ------LSGGMRQRVAIARALATRPKLLLLDEPFGALDALTREELQDELLRLWEETRKTV 184
Query: 534 IYATHQVE---FLPAADLILVIKDG 555
+ TH V+ +L AD ++V+ +
Sbjct: 185 LLVTHDVDEAVYL--ADRVVVLSNR 207
|
Length = 248 |
| >gnl|CDD|236865 PRK11160, PRK11160, cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed | Back alignment and domain information |
|---|
Score = 104 bits (263), Expect = 5e-23
Identities = 73/264 (27%), Positives = 116/264 (43%), Gaps = 43/264 (16%)
Query: 913 IISVERILQCACIPSEPALVIEATKPNNSRPSHGEVNIRHLQVRYAPNLPLVLR------ 966
I S RI + I + V T + + + + ++ Y VL+
Sbjct: 308 IASARRINE---ITEQKPEVTFPTT-STAAADQVSLTLNNVSFTYPDQPQPVLKGLSLQI 363
Query: 967 ---------GRTGSGKSTLIQTLFRIVESTAGHILIDGKDISLIGLHDLRTRLSIIPQDP 1017
GRTG GKSTL+Q L R + G IL++G+ I+ LR +S++ Q
Sbjct: 364 KAGEKVALLGRTGCGKSTLLQLLTRAWDPQQGEILLNGQPIADYSEAALRQAISVVSQRV 423
Query: 1018 TMFEGTTRSNLDPLEEHA-DEQIWEALDKCQLGDEVRKKKGKLD----------SQG--- 1063
+F T R NL +A DE + E L + L + KG L+ S G
Sbjct: 424 HLFSATLRDNLLLAAPNASDEALIEVLQQVGLEKLLEDDKG-LNAWLGEGGRQLSGGEQR 482
Query: 1064 -----RVLLKKSKVLVLDEATASVDTATDNQIQQTLRQHFSDCTVVTIAHRITSV--LDS 1116
R LL + +L+LDE T +D T+ QI + L +H + TV+ I HR+T + D
Sbjct: 483 RLGIARALLHDAPLLLLDEPTEGLDAETERQILELLAEHAQNKTVLMITHRLTGLEQFDR 542
Query: 1117 AMVLLLNHGLIKEYDSPTKLLENK 1140
+ ++++G I E + +LL +
Sbjct: 543 --ICVMDNGQIIEQGTHQELLAQQ 564
|
Length = 574 |
| >gnl|CDD|226359 COG3839, MalK, ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Score = 101 bits (253), Expect = 5e-23
Identities = 67/222 (30%), Positives = 94/222 (42%), Gaps = 40/222 (18%)
Query: 373 NPTLRNINLKVFHGMRVAVCGTVGSGKSSCLSCILGGVPKESGIIRLCGTK--------- 423
L+++NL + G V + G G GKS+ L I G SG I + G
Sbjct: 16 FEVLKDVNLDIEDGEFVVLLGPSGCGKSTLLRMIAGLEEPTSGEILIDGRDVTDLPPEKR 75
Query: 424 --AYVAQS----PWIQSGKIEENILFG-------KEMDRERYERVLEACSLKKDLEVLPF 470
A V Q+ P + ENI FG K +R + V + L+ L P
Sbjct: 76 GIAMVFQNYALYP---HMTVYENIAFGLKLRGVPKAEIDKRVKEVAKLLGLEHLLNRKPL 132
Query: 471 GDQTIIGERGINLSGGQKQRIQIARPLYQDADIFLLDDPFSPVDDHTGAHL---FKFCWV 527
LSGGQ+QR+ +AR L + +FLLD+P S +D + K
Sbjct: 133 Q-----------LSGGQRQRVALARALVRKPKVFLLDEPLSNLDAKLRVLMRSEIKKLHE 181
Query: 528 SSSKTVIYATH-QVEFLPAADLILVIKDGKITQAGKYSDILN 568
T IY TH QVE + AD I+V+ DG+I Q G ++
Sbjct: 182 RLGTTTIYVTHDQVEAMTLADRIVVMNDGRIQQVGTPLELYE 223
|
Length = 338 |
| >gnl|CDD|213215 cd03248, ABCC_TAP, ATP-binding cassette domain of the Transporter Associated with Antigen Processing, subfamily C | Back alignment and domain information |
|---|
Score = 98.3 bits (245), Expect = 7e-23
Identities = 56/182 (30%), Positives = 96/182 (52%), Gaps = 19/182 (10%)
Query: 965 LRGRTGSGKSTLIQTLFRIVESTAGHILIDGKDISLIGLHDLRTRLSIIPQDPTMFEGTT 1024
L G +GSGKST++ L + G +L+DGK IS L +++S++ Q+P +F +
Sbjct: 45 LVGPSGSGKSTVVALLENFYQPQGGQVLLDGKPISQYEHKYLHSKVSLVGQEPVLFARSL 104
Query: 1025 RSNLD-PLEEHADEQIWEALDKCQLGDEVRK----------KKGKLDSQG--------RV 1065
+ N+ L+ + E + EA K + + +KG S G R
Sbjct: 105 QDNIAYGLQSCSFECVKEAAQKAHAHSFISELASGYDTEVGEKGSQLSGGQKQRVAIARA 164
Query: 1066 LLKKSKVLVLDEATASVDTATDNQIQQTLRQHFSDCTVVTIAHRITSVLDSAMVLLLNHG 1125
L++ +VL+LDEAT+++D ++ Q+QQ L TV+ IAHR+++V + +L+L+ G
Sbjct: 165 LIRNPQVLILDEATSALDAESEQQVQQALYDWPERRTVLVIAHRLSTVERADQILVLDGG 224
Query: 1126 LI 1127
I
Sbjct: 225 RI 226
|
TAP (Transporter Associated with Antigen Processing) is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules. Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes. Length = 226 |
| >gnl|CDD|213179 cd00267, ABC_ATPase, ATP-binding cassette transporter nucleotide-binding domain | Back alignment and domain information |
|---|
Score = 95.4 bits (238), Expect = 1e-22
Identities = 61/201 (30%), Positives = 88/201 (43%), Gaps = 47/201 (23%)
Query: 359 EIIDGSFSWDFSSPNPTLRNINLKVFHGMRVAVCGTVGSGKSSCLSCILGGVPKESGIIR 418
EI + SF + L N++L + G VA+ G GSGKS+ L I G + SG I
Sbjct: 1 EIENLSFRYG---GRTALDNVSLTLKAGEIVALVGPNGSGKSTLLRAIAGLLKPTSGEIL 57
Query: 419 LCGTKAYVAQSPWIQSGKIEENILFGKEMDRERYERVLEACSLKKDLEVLPFGDQTIIGE 478
+ G I +EE L++ + +P Q
Sbjct: 58 IDGKD--------IAKLPLEE---------------------LRRRIGYVP---Q----- 80
Query: 479 RGINLSGGQKQRIQIARPLYQDADIFLLDDPFSPVDDHTGAHLFKFC--WVSSSKTVIYA 536
LSGGQ+QR+ +AR L + D+ LLD+P S +D + L + +TVI
Sbjct: 81 ----LSGGQRQRVALARALLLNPDLLLLDEPTSGLDPASRERLLELLRELAEEGRTVIIV 136
Query: 537 THQVEFL-PAADLILVIKDGK 556
TH E AAD ++V+KDGK
Sbjct: 137 THDPELAELAADRVIVLKDGK 157
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 157 |
| >gnl|CDD|236865 PRK11160, PRK11160, cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed | Back alignment and domain information |
|---|
Score = 102 bits (257), Expect = 2e-22
Identities = 67/232 (28%), Positives = 111/232 (47%), Gaps = 29/232 (12%)
Query: 357 AIEIIDGSFSWDFSSPNPTLRNINLKVFHGMRVAVCGTVGSGKSSCLSCILGGVPKESGI 416
++ + + SF++ P P L+ ++L++ G +VA+ G G GKS+ L + + G
Sbjct: 338 SLTLNNVSFTYP-DQPQPVLKGLSLQIKAGEKVALLGRTGCGKSTLLQLLTRAWDPQQGE 396
Query: 417 IRLCGT--KAY-----------VAQSPWIQSGKIEENILFGK-EMDRERYERVLEACSLK 462
I L G Y V+Q + S + +N+L E VL+ L+
Sbjct: 397 ILLNGQPIADYSEAALRQAISVVSQRVHLFSATLRDNLLLAAPNASDEALIEVLQQVGLE 456
Query: 463 KDLEVLPFGDQ---TIIGERGINLSGGQKQRIQIARPLYQDADIFLLDDPFSPVDDHTGA 519
K LE D+ +GE G LSGG+++R+ IAR L DA + LLD+P +D T
Sbjct: 457 KLLE----DDKGLNAWLGEGGRQLSGGEQRRLGIARALLHDAPLLLLDEPTEGLDAETER 512
Query: 520 H----LFKFCWVSSSKTVIYATHQVEFLPAADLILVIKDGKITQAGKYSDIL 567
L + +KTV+ TH++ L D I V+ +G+I + G + ++L
Sbjct: 513 QILELLAEHA---QNKTVLMITHRLTGLEQFDRICVMDNGQIIEQGTHQELL 561
|
Length = 574 |
| >gnl|CDD|163508 TIGR03796, NHLM_micro_ABC1, NHLM bacteriocin system ABC transporter, peptidase/ATP-binding protein | Back alignment and domain information |
|---|
Score = 103 bits (259), Expect = 2e-22
Identities = 106/492 (21%), Positives = 196/492 (39%), Gaps = 88/492 (17%)
Query: 728 IFRAPMYFFDSTPSGRILNRVSENVKWADQSAADMDIPYDIGAFAFSMIQLLGIIVVMSL 787
I R P+ FF +G I +RV N + A+ + + A + L+ ++M L
Sbjct: 237 ILRLPVRFFAQRHAGDIASRVQLNDQVAEFLSGQ------LATTALDAVMLVFYALLMLL 290
Query: 788 VAWQ---VLIVFVPV-IATFIWYQQYYITSTREL----SRLIGVCKAPVIQQFSETI--S 837
+ I F + + + + + R L +L GV + + Q ET+ S
Sbjct: 291 YDPVLTLIGIAFAAINVLALQLVSRRRVDANRRLQQDAGKLTGVAISGL--QSIETLKAS 348
Query: 838 GS-------------TTIRSLDQELRFRDTNMK----LIDEYSRPKFHIAGAMEWL--RF 878
G + + QEL + L+ + + G + + +
Sbjct: 349 GLESDFFSRWAGYQAKLLNAQ-QELGVLTQILGVLPTLLTSLNSALILVVGGLRVMEGQL 407
Query: 879 CIDML---SSITFAFS--LAFLISVPNGIIHPYKNLERKIISVERILQCACIPSEPALVI 933
I ML S+ +F + L+ + + LE + ++ +L+ P
Sbjct: 408 TIGMLVAFQSLMSSFLEPVNNLVGFGGTL----QELEGDLNRLDDVLRNPVDPLLEEEEA 463
Query: 934 EATKPNNSRPSHGEVNIRHLQVRYAP-NLPLV--------------LRGRTGSGKSTLIQ 978
A S G V +R++ Y+P PL+ L G +GSGKST+ +
Sbjct: 464 PAAGSEPSPRLSGYVELRNITFGYSPLEPPLIENFSLTLQPGQRVALVGGSGSGKSTIAK 523
Query: 979 TLFRIVESTAGHILIDGKDISLIGLHDLRTRLSIIPQDPTMFEGTTRSNL---DPLEEHA 1035
+ + + +G IL DG I L ++++ QD +FEGT R NL DP
Sbjct: 524 LVAGLYQPWSGEILFDGIPREEIPREVLANSVAMVDQDIFLFEGTVRDNLTLWDP--TIP 581
Query: 1036 DEQIWEALDKCQLGDEVRKKKGKLDSQ------------------GRVLLKKSKVLVLDE 1077
D + A + D + + G D++ R L++ +L+LDE
Sbjct: 582 DADLVRACKDAAIHDVITSRPGGYDAELAEGGANLSGGQRQRLEIARALVRNPSILILDE 641
Query: 1078 ATASVDTATDNQIQQTLRQHFSDCTVVTIAHRITSVLDSAMVLLLNHGLIKEYDSPTKLL 1137
AT+++D T+ I LR+ CT + +AHR++++ D +++L G + + + +L
Sbjct: 642 ATSALDPETEKIIDDNLRRR--GCTCIIVAHRLSTIRDCDEIIVLERGKVVQRGTHEELW 699
Query: 1138 ENKSSSFAQLVA 1149
++A+L+
Sbjct: 700 A-VGGAYARLIR 710
|
This protein describes a multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHLM, Nitrile Hydratase Leader Microcin [Transport and binding proteins, Amino acids, peptides and amines, Cellular processes, Biosynthesis of natural products]. Length = 710 |
| >gnl|CDD|213226 cd03259, ABC_Carb_Solutes_like, ATP-binding cassette domain of the carbohydrate and solute transporters-like | Back alignment and domain information |
|---|
Score = 96.4 bits (241), Expect = 2e-22
Identities = 67/226 (29%), Positives = 94/226 (41%), Gaps = 38/226 (16%)
Query: 360 IIDGSFSWDFSSPNPTLRNINLKVFHGMRVAVCGTVGSGKSSCLSCILGGVPKESGIIRL 419
+ G S + S L +++L V G +A+ G G GK++ L I G +SG I +
Sbjct: 2 ELKG-LSKTYGS-VRALDDLSLTVEPGEFLALLGPSGCGKTTLLRLIAGLERPDSGEILI 59
Query: 420 CGTK-----------AYVAQS----PWIQSGKIEENILFG----KEMDRERYERVLEACS 460
G V Q P + + ENI FG E RV E
Sbjct: 60 DGRDVTGVPPERRNIGMVFQDYALFPHL---TVAENIAFGLKLRGVPKAEIRARVRELLE 116
Query: 461 LKKDLEVLP-FGDQTIIGERGINLSGGQKQRIQIARPLYQDADIFLLDDPFSPVDDHTGA 519
L +L + + LSGGQ+QR+ +AR L ++ + LLD+P S +D
Sbjct: 117 LVGLEGLLNRYPHE---------LSGGQQQRVALARALAREPSLLLLDEPLSALDAKLRE 167
Query: 520 HL---FKFCWVSSSKTVIYATH-QVEFLPAADLILVIKDGKITQAG 561
L K T IY TH Q E L AD I V+ +G+I Q G
Sbjct: 168 ELREELKELQRELGITTIYVTHDQEEALALADRIAVMNEGRIVQVG 213
|
This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 213 |
| >gnl|CDD|224045 COG1120, FepC, ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism] | Back alignment and domain information |
|---|
Score = 97.2 bits (243), Expect = 3e-22
Identities = 68/243 (27%), Positives = 104/243 (42%), Gaps = 45/243 (18%)
Query: 356 TAIEIIDGSFSWDFSSPNPTLRNINLKVFHGMRVAVCGTVGSGKSSCLSCILGGVPKESG 415
+E+ + SF + P L +++ + G + G GSGKS+ L C+ G + +SG
Sbjct: 1 MMLEVENLSFGYG---GKPILDDLSFSIPKGEITGILGPNGSGKSTLLKCLAGLLKPKSG 57
Query: 416 IIRLCGTK-------------AYVAQSPWIQSG-KIEENILFG-----------KEMDRE 450
+ L G AYV QSP G + E +L G + D E
Sbjct: 58 EVLLDGKDIASLSPKELAKKLAYVPQSPSAPFGLTVYELVLLGRYPHLGLFGRPSKEDEE 117
Query: 451 RYERVLEACSLKKDLEVLPFGDQTIIGERGIN-LSGGQKQRIQIARPLYQDADIFLLDDP 509
E LE LE L +R ++ LSGG++QR+ IAR L Q+ I LLD+P
Sbjct: 118 IVEEALELL----GLEHL--------ADRPVDELSGGERQRVLIARALAQETPILLLDEP 165
Query: 510 FSPVDDHTGAHLFKFCW---VSSSKTVIYATHQVEF-LPAADLILVIKDGKITQAGKYSD 565
S +D + + TV+ H + AD ++++KDGKI G +
Sbjct: 166 TSHLDIAHQIEVLELLRDLNREKGLTVVMVLHDLNLAARYADHLILLKDGKIVAQGTPEE 225
Query: 566 ILN 568
+L
Sbjct: 226 VLT 228
|
Length = 258 |
| >gnl|CDD|182733 PRK10790, PRK10790, putative multidrug transporter membrane\ATP-binding components; Provisional | Back alignment and domain information |
|---|
Score = 101 bits (254), Expect = 5e-22
Identities = 86/279 (30%), Positives = 131/279 (46%), Gaps = 29/279 (10%)
Query: 308 LQEPIYYLPESISMMIQAKVPLDRIASFLCLEGLQTDVLEKMPRGNSDTA-----IEIID 362
L EP+ L SM+ QA V +R+ F ++G + GN D I+I +
Sbjct: 294 LNEPLIELTTQQSMLQQAVVAGERV--FELMDGPRQQY------GNDDRPLQSGRIDIDN 345
Query: 363 GSFSWDFSSPNPTLRNINLKVFHGMRVAVCGTVGSGKSSCLSCILGGVPKESGIIRLCGT 422
SF++ N L+NINL V VA+ G GSGKS+ S ++G P G IRL G
Sbjct: 346 VSFAYR--DDNLVLQNINLSVPSRGFVALVGHTGSGKSTLASLLMGYYPLTEGEIRLDGR 403
Query: 423 K-------------AYVAQSPWIQSGKIEENILFGKEMDRERYERVLEACSLKKDLEVLP 469
A V Q P + + N+ G+++ E+ + LE L + LP
Sbjct: 404 PLSSLSHSVLRQGVAMVQQDPVVLADTFLANVTLGRDISEEQVWQALETVQLAELARSLP 463
Query: 470 FGDQTIIGERGINLSGGQKQRIQIARPLYQDADIFLLDDPFSPVDDHTGAHLFK-FCWVS 528
G T +GE+G NLS GQKQ + +AR L Q I +LD+ + +D T + + V
Sbjct: 464 DGLYTPLGEQGNNLSVGQKQLLALARVLVQTPQILILDEATANIDSGTEQAIQQALAAVR 523
Query: 529 SSKTVIYATHQVEFLPAADLILVIKDGKITQAGKYSDIL 567
T++ H++ + AD ILV+ G+ + G + +L
Sbjct: 524 EHTTLVVIAHRLSTIVEADTILVLHRGQAVEQGTHQQLL 562
|
Length = 592 |
| >gnl|CDD|233596 TIGR01846, type_I_sec_HlyB, type I secretion system ABC transporter, HlyB family | Back alignment and domain information |
|---|
Score = 102 bits (255), Expect = 5e-22
Identities = 111/481 (23%), Positives = 204/481 (42%), Gaps = 94/481 (19%)
Query: 732 PMYFFDSTPSGRILNRVSE--NVKWADQSAADM---DIPYDIGAFA--FSMIQLLGIIVV 784
P+ +F+S G + RV E ++ +A D+ + + A F L +V+
Sbjct: 226 PLGYFESRRVGDTVARVRELEQIRNFLTGSALTVVLDLLFVVVFLAVMFFYSPTLTGVVI 285
Query: 785 MSLVAWQVLIVFV-PVIATFIWYQQYYITSTRELSRLIGVCKAPVIQQFSETISGSTTIR 843
SLV + +L VFV P++ + + + S S L+ E+++G TI+
Sbjct: 286 GSLVCYALLSVFVGPILRKRV--EDKFERSAAATSFLV------------ESVTGIETIK 331
Query: 844 SLDQELRFRDTNMKLIDEYSRPKFHIAGAMEWLRFCIDMLSSITFAFSLAFLIS-VPNGI 902
+ E +F++ + + Y F + I+++ +TFA L F V G
Sbjct: 332 ATATEPQFQNRWDRQLAAYVAASFRVTNLGNIAGQAIELIQKLTFAILLWFGAHLVIGGA 391
Query: 903 IHP-----------------------YKNLERKIISVERILQCACIPSEPALVIEATKPN 939
+ P +++ ++ I++ER+ P+EP A P
Sbjct: 392 LSPGQLVAFNMLAGRVTQPVLRLAQLWQDFQQTGIALERLGDILNSPTEPRSAGLAALPE 451
Query: 940 NSRPSHGEVNIRHLQVRYAPNLPLVLR---------------GRTGSGKSTLIQTLFRIV 984
G + +++ RYAP+ P VL G +GSGKSTL + L R+
Sbjct: 452 LR----GAITFENIRFRYAPDSPEVLSNLNLDIKPGEFIGIVGPSGSGKSTLTKLLQRLY 507
Query: 985 ESTAGHILIDGKDISLIGLHDLRTRLSIIPQDPTMFEGTTRSNL---DPL--EEH--ADE 1037
G +L+DG D+++ LR ++ ++ Q+ +F + R N+ +P EH
Sbjct: 508 TPQHGQVLVDGVDLAIADPAWLRRQMGVVLQENVLFSRSIRDNIALCNPGAPFEHVIHAA 567
Query: 1038 QIWEALD---------KCQLGDEVRKKKGKLDSQG--------RVLLKKSKVLVLDEATA 1080
++ A D ++G+ KG S G R L+ ++L+ DEAT+
Sbjct: 568 KLAGAHDFISELPQGYNTEVGE-----KGANLSGGQRQRIAIARALVGNPRILIFDEATS 622
Query: 1081 SVDTATDNQIQQTLRQHFSDCTVVTIAHRITSVLDSAMVLLLNHGLIKEYDSPTKLLENK 1140
++D ++ I + +R+ TV+ IAHR+++V +++L G I E +LL +
Sbjct: 623 ALDYESEALIMRNMREICRGRTVIIIAHRLSTVRACDRIIVLEKGQIAESGRHEELLALQ 682
Query: 1141 S 1141
Sbjct: 683 G 683
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion [Protein fate, Protein and peptide secretion and trafficking]. Length = 694 |
| >gnl|CDD|234041 TIGR02868, CydC, thiol reductant ABC exporter, CydC subunit | Back alignment and domain information |
|---|
Score = 100 bits (252), Expect = 6e-22
Identities = 66/235 (28%), Positives = 100/235 (42%), Gaps = 36/235 (15%)
Query: 909 LERKIISVERILQCACIPSEPALVIEATKPNNSRPSHGEVNIRHLQVRYAPNLPLVLR-- 966
L R + ERI++ A A + +R L Y P VL
Sbjct: 297 LTRVRAAAERIVEVLDAAGPVAEG-SAPAAGAVGLGKPTLELRDLSAGYPGA-PPVLDGV 354
Query: 967 -------------GRTGSGKSTLIQTLFRIVESTAGHILIDGKDISLIGLHDLRTRLSII 1013
G +GSGKSTL+ TL +++ G + +DG +S + ++R R+S+
Sbjct: 355 SLDLPPGERVAILGPSGSGKSTLLATLAGLLDPLQGEVTLDGVPVSSLDQDEVRRRVSVC 414
Query: 1014 PQDPTMFEGTTRSNLD-PLEEHADEQIWEALDKCQLGDEVRKKKGKLD----------SQ 1062
QD +F+ T R NL + DE++W AL++ L D +R LD S
Sbjct: 415 AQDAHLFDTTVRENLRLARPDATDEELWAALERVGLADWLRALPDGLDTVLGEGGARLSG 474
Query: 1063 G--------RVLLKKSKVLVLDEATASVDTATDNQIQQTLRQHFSDCTVVTIAHR 1109
G R LL + +L+LDE T +D T +++ + L S TVV I H
Sbjct: 475 GERQRLALARALLADAPILLLDEPTEHLDAETADELLEDLLAALSGRTVVLITHH 529
|
The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex. Length = 530 |
| >gnl|CDD|224050 COG1125, OpuBA, ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 97.8 bits (244), Expect = 6e-22
Identities = 73/264 (27%), Positives = 112/264 (42%), Gaps = 41/264 (15%)
Query: 358 IEIIDGSFSWDFSSPNPTLRNINLKVFHGMRVAVCGTVGSGKSSCLSCILGGVPKESGII 417
IE + S + + ++NL + G + + G GSGK++ L I + SG I
Sbjct: 2 IEFENVSKRY---GNKKAVDDVNLTIEEGEFLVLIGPSGSGKTTTLKMINRLIEPTSGEI 58
Query: 418 RLCGTK-------------AYVAQSPWIQSG-----KIEENILFGKEM---DRERYERVL 456
+ G YV Q Q G + ENI ++ D+ER ++
Sbjct: 59 LIDGEDISDLDPVELRRKIGYVIQ----QIGLFPHLTVAENIATVPKLLGWDKERIKKRA 114
Query: 457 EACSLKKDLEVLPFGDQTIIGERGIN-LSGGQKQRIQIARPLYQDADIFLLDDPFSPVDD 515
+ L+ + D R + LSGGQ+QR+ +AR L D I L+D+PF +D
Sbjct: 115 DELLDLVGLDPSEYAD------RYPHELSGGQQQRVGVARALAADPPILLMDEPFGALDP 168
Query: 516 HTGAHL---FKFCWVSSSKTVIYATHQV-EFLPAADLILVIKDGKITQAGKYSDIL-NSG 570
T L K KT+++ TH + E L AD I V+ G+I Q +IL N
Sbjct: 169 ITRKQLQEEIKELQKELGKTIVFVTHDIDEALKLADRIAVMDAGEIVQYDTPDEILANPA 228
Query: 571 TDFME-LVGAHKQALSGLDSIDRG 593
DF+E G ++ L L +
Sbjct: 229 NDFVEDFFGESERGLRLLSLVSVA 252
|
Length = 309 |
| >gnl|CDD|213260 cd03293, ABC_NrtD_SsuB_transporters, ATP-binding cassette domain of the nitrate and sulfonate transporters | Back alignment and domain information |
|---|
Score = 95.2 bits (238), Expect = 6e-22
Identities = 65/203 (32%), Positives = 89/203 (43%), Gaps = 43/203 (21%)
Query: 376 LRNINLKVFHGMRVAVCGTVGSGKSSCLSCILGGVPKESGIIRLCGTK--------AYVA 427
L +I+L V G VA+ G G GKS+ L I G SG + + G YV
Sbjct: 20 LEDISLSVEEGEFVALVGPSGCGKSTLLRIIAGLERPTSGEVLVDGEPVTGPGPDRGYVF 79
Query: 428 QS----PWIQSGKIEENILFGKEM----DRERYERV---LEACSLKKDLEVLPFGDQTII 476
Q PW+ + +N+ G E+ E ER LE L P Q
Sbjct: 80 QQDALLPWL---TVLDNVALGLELQGVPKAEARERAEELLELVGLSGFENAYP--HQ--- 131
Query: 477 GERGINLSGGQKQRIQIARPLYQDADIFLLDDPFSPVDDHT----GAHLFKFCWVSSSKT 532
LSGG +QR+ +AR L D D+ LLD+PFS +D T L W + KT
Sbjct: 132 ------LSGGMRQRVALARALAVDPDVLLLDEPFSALDALTREQLQEELLDI-WRETGKT 184
Query: 533 VIYATHQVE---FLPAADLILVI 552
V+ TH ++ FL AD ++V+
Sbjct: 185 VLLVTHDIDEAVFL--ADRVVVL 205
|
NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 220 |
| >gnl|CDD|213266 cd03299, ABC_ModC_like, ATP-binding cassette domain similar to the molybdate transporter | Back alignment and domain information |
|---|
Score = 94.7 bits (236), Expect = 1e-21
Identities = 66/217 (30%), Positives = 99/217 (45%), Gaps = 34/217 (15%)
Query: 376 LRNINLKVFHGMRVAVCGTVGSGKSSCLSCILGGVPKESGIIRLCGT-----------KA 424
L+N++L+V G + G GSGKS L I G + +SG I L G +
Sbjct: 15 LKNVSLEVERGDYFVILGPTGSGKSVLLETIAGFIKPDSGKILLNGKDITNLPPEKRDIS 74
Query: 425 YVAQS----PWIQSGKIEENILFG----KEMDRERYERVLEACSLKKDLEVLPFGDQTII 476
YV Q+ P + + +NI +G K +E +VLE + +L +T
Sbjct: 75 YVPQNYALFPHMT---VYKNIAYGLKKRKVDKKEIERKVLEIAEMLGIDHLLNRKPET-- 129
Query: 477 GERGINLSGGQKQRIQIARPLYQDADIFLLDDPFSPVDDHTGAHL---FKFCWVSSSKTV 533
LSGG++QR+ IAR L + I LLD+PFS +D T L K TV
Sbjct: 130 ------LSGGEQQRVAIARALVVNPKILLLDEPFSALDVRTKEKLREELKKIRKEFGVTV 183
Query: 534 IYATH-QVEFLPAADLILVIKDGKITQAGKYSDILNS 569
++ TH E AD + ++ +GK+ Q GK ++
Sbjct: 184 LHVTHDFEEAWALADKVAIMLNGKLIQVGKPEEVFKK 220
|
Archaeal protein closely related to ModC. ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 235 |
| >gnl|CDD|213202 cd03235, ABC_Metallic_Cations, ATP-binding cassette domain of the metal-type transporters | Back alignment and domain information |
|---|
Score = 93.8 bits (234), Expect = 2e-21
Identities = 56/186 (30%), Positives = 89/186 (47%), Gaps = 29/186 (15%)
Query: 374 PTLRNINLKVFHGMRVAVCGTVGSGKSSCLSCILGGVPKESGIIRLCGTK--------AY 425
P L +++ +V G +A+ G G+GKS+ L ILG + SG IR+ G Y
Sbjct: 13 PVLEDVSFEVKPGEFLAIVGPNGAGKSTLLKAILGLLKPTSGSIRVFGKPLEKERKRIGY 72
Query: 426 VAQSPWIQSG---KIEENIL--------FGKEMDRERYERVLEACSLKKDLEVLPFGDQT 474
V Q I + + +L + + + +V EA L++ + + D+
Sbjct: 73 VPQRRSIDRDFPISVRDVVLMGLYGHKGLFRRLSKADKAKVDEA--LER-VGLSELADRQ 129
Query: 475 IIGERGINLSGGQKQRIQIARPLYQDADIFLLDDPFSPVDDHTGAHLFKFC--WVSSSKT 532
I GE LSGGQ+QR+ +AR L QD D+ LLD+PF+ VD T +++ T
Sbjct: 130 I-GE----LSGGQQQRVLLARALVQDPDLLLLDEPFAGVDPKTQEDIYELLRELRREGMT 184
Query: 533 VIYATH 538
++ TH
Sbjct: 185 ILVVTH 190
|
This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates. Length = 213 |
| >gnl|CDD|130260 TIGR01192, chvA, glucan exporter ATP-binding protein | Back alignment and domain information |
|---|
Score = 98.8 bits (246), Expect = 4e-21
Identities = 63/201 (31%), Positives = 105/201 (52%), Gaps = 20/201 (9%)
Query: 967 GRTGSGKSTLIQTLFRIVESTAGHILIDGKDISLIGLHDLRTRLSIIPQDPTMFEGTTRS 1026
G TG+GK+TLI L R+ + T G ILIDG DI+ + LR ++ + QD +F + R
Sbjct: 368 GPTGAGKTTLINLLQRVYDPTVGQILIDGIDINTVTRESLRKSIATVFQDAGLFNRSIRE 427
Query: 1027 NLDPLEEHA-DEQIWEALDKCQLGDEVRKKKGKLDSQ------------------GRVLL 1067
N+ E A DE+++EA D + K+ D+ R +L
Sbjct: 428 NIRLGREGATDEEVYEAAKAAAAHDFILKRSNGYDTLVGERGNRLSGGERQRLAIARAIL 487
Query: 1068 KKSKVLVLDEATASVDTATDNQIQQTLRQHFSDCTVVTIAHRITSVLDSAMVLLLNHGLI 1127
K + +LVLDEAT+++D T+ +++ + + T IAHR+++V ++ +VL L+ G +
Sbjct: 488 KNAPILVLDEATSALDVETEARVKNAIDALRKNRTTFIIAHRLSTVRNADLVLFLDQGRL 547
Query: 1128 KEYDSPTKLLENKSSSFAQLV 1148
E S +L+ K F +L+
Sbjct: 548 IEKGSFQELI-QKDGRFYKLL 567
|
This model describes glucan exporter ATP binding protein in bacteria. It belongs to the larger ABC transporter superfamily with the characteristic ATP binding motif. The In general, this protein is in some ways implicated in osmoregulation and suggested to participate in the export of glucan from the cytoplasm to periplasm. The cyclic beta-1,2-glucan in the bactrerial periplasmic space is suggested to confer the property of high osmolority. It has also been demonstrated that mutants in this loci have lost functions of virulence and motility. It is unclear as to how virulence and osmoadaptaion are related [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 585 |
| >gnl|CDD|184214 PRK13657, PRK13657, cyclic beta-1,2-glucan ABC transporter; Provisional | Back alignment and domain information |
|---|
Score = 97.7 bits (244), Expect = 8e-21
Identities = 72/261 (27%), Positives = 124/261 (47%), Gaps = 23/261 (8%)
Query: 357 AIEIIDGSFSWDFSSPNPTLRNINLKVFHGMRVAVCGTVGSGKSSCLSCILGGVPKESGI 416
A+E D SFS+D S + +++ + G VA+ G G+GKS+ ++ + +SG
Sbjct: 334 AVEFDDVSFSYDNSRQ--GVEDVSFEAKPGQTVAIVGPTGAGKSTLINLLQRVFDPQSGR 391
Query: 417 IRLCGTK-------------AYVAQSPWIQSGKIEENILFGKEMDRERYERVLEACSLKK 463
I + GT A V Q + + IE+NI G+ + E + A +
Sbjct: 392 ILIDGTDIRTVTRASLRRNIAVVFQDAGLFNRSIEDNIRVGRPDATD--EEMRAAAERAQ 449
Query: 464 DLEVL---PFGDQTIIGERGINLSGGQKQRIQIARPLYQDADIFLLDDPFSPVDDHTGAH 520
+ + P G T++GERG LSGG++QR+ IAR L +D I +LD+ S +D T A
Sbjct: 450 AHDFIERKPDGYDTVVGERGRQLSGGERQRLAIARALLKDPPILILDEATSALDVETEAK 509
Query: 521 L-FKFCWVSSSKTVIYATHQVEFLPAADLILVIKDGKITQAGKYSDILNSGTDFMELVGA 579
+ + +T H++ + AD ILV +G++ ++G + +++ G F L
Sbjct: 510 VKAALDELMKGRTTFIIAHRLSTVRNADRILVFDNGRVVESGSFDELVARGGRFAAL--L 567
Query: 580 HKQALSGLDSIDRGPVSERKS 600
Q + D + P +E +
Sbjct: 568 RAQGMLQEDERRKQPAAEGAN 588
|
Length = 588 |
| >gnl|CDD|233596 TIGR01846, type_I_sec_HlyB, type I secretion system ABC transporter, HlyB family | Back alignment and domain information |
|---|
Score = 98.3 bits (245), Expect = 8e-21
Identities = 69/255 (27%), Positives = 115/255 (45%), Gaps = 35/255 (13%)
Query: 350 PRGNSDTAIEIIDGS-------FSWDFSSPNPTLRNINLKVFHGMRVAVCGTVGSGKSSC 402
PR A+ + G+ F + SP L N+NL + G + + G GSGKS+
Sbjct: 441 PRSAGLAALPELRGAITFENIRFRYAPDSP-EVLSNLNLDIKPGEFIGIVGPSGSGKSTL 499
Query: 403 LSCILGGVPKESGIIRLCGTKAYVAQSPWIQ-------------SGKIEENILFGK-EMD 448
+ + G + + G +A W++ S I +NI
Sbjct: 500 TKLLQRLYTPQHGQVLVDGVDLAIADPAWLRRQMGVVLQENVLFSRSIRDNIALCNPGAP 559
Query: 449 RERYERVLEACSLKKDLEV---LPFGDQTIIGERGINLSGGQKQRIQIARPLYQDADIFL 505
+E V+ A L + LP G T +GE+G NLSGGQ+QRI IAR L + I +
Sbjct: 560 ---FEHVIHAAKLAGAHDFISELPQGYNTEVGEKGANLSGGQRQRIAIARALVGNPRILI 616
Query: 506 LDDPFSPVDDHTGA----HLFKFCWVSSSKTVIYATHQVEFLPAADLILVIKDGKITQAG 561
D+ S +D + A ++ + C +TVI H++ + A D I+V++ G+I ++G
Sbjct: 617 FDEATSALDYESEALIMRNMREIC---RGRTVIIIAHRLSTVRACDRIIVLEKGQIAESG 673
Query: 562 KYSDILNSGTDFMEL 576
++ ++L + L
Sbjct: 674 RHEELLALQGLYARL 688
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion [Protein fate, Protein and peptide secretion and trafficking]. Length = 694 |
| >gnl|CDD|183016 PRK11176, PRK11176, lipid transporter ATP-binding/permease protein; Provisional | Back alignment and domain information |
|---|
Score = 97.8 bits (244), Expect = 8e-21
Identities = 67/203 (33%), Positives = 109/203 (53%), Gaps = 21/203 (10%)
Query: 965 LRGRTGSGKSTLIQTLFRIVESTAGHILIDGKDISLIGLHDLRTRLSIIPQDPTMFEGTT 1024
L GR+GSGKST+ L R + G IL+DG D+ L LR +++++ Q+ +F T
Sbjct: 374 LVGRSGSGKSTIANLLTRFYDIDEGEILLDGHDLRDYTLASLRNQVALVSQNVHLFNDTI 433
Query: 1025 RSNL--DPLEEHADEQIWEA---------LDKCQLG-DEVRKKKGKLDSQG--------R 1064
+N+ E+++ EQI EA ++K G D V + G L S G R
Sbjct: 434 ANNIAYARTEQYSREQIEEAARMAYAMDFINKMDNGLDTVIGENGVLLSGGQRQRIAIAR 493
Query: 1065 VLLKKSKVLVLDEATASVDTATDNQIQQTLRQHFSDCTVVTIAHRITSVLDSAMVLLLNH 1124
LL+ S +L+LDEAT+++DT ++ IQ L + + T + IAHR++++ + +L++
Sbjct: 494 ALLRDSPILILDEATSALDTESERAIQAALDELQKNRTSLVIAHRLSTIEKADEILVVED 553
Query: 1125 GLIKEYDSPTKLLENKSSSFAQL 1147
G I E + +LL +AQL
Sbjct: 554 GEIVERGTHAELLAQN-GVYAQL 575
|
Length = 582 |
| >gnl|CDD|213215 cd03248, ABCC_TAP, ATP-binding cassette domain of the Transporter Associated with Antigen Processing, subfamily C | Back alignment and domain information |
|---|
Score = 91.0 bits (226), Expect = 2e-20
Identities = 56/214 (26%), Positives = 100/214 (46%), Gaps = 21/214 (9%)
Query: 362 DGSFSWDFSSPNPTLRNINLKVFHGMRVAVCGTVGSGKSSCLSCILGGVPKESGIIRLCG 421
+ +F++ L++++ + G A+ G GSGKS+ ++ + + G + L G
Sbjct: 16 NVTFAYPTRPDTLVLQDVSFTLHPGEVTALVGPSGSGKSTVVALLENFYQPQGGQVLLDG 75
Query: 422 TK-------------AYVAQSPWIQSGKIEENILFGKEMDRERYERVLEACS---LKKDL 465
+ V Q P + + +++NI +G + +E V EA +
Sbjct: 76 KPISQYEHKYLHSKVSLVGQEPVLFARSLQDNIAYG--LQSCSFECVKEAAQKAHAHSFI 133
Query: 466 EVLPFGDQTIIGERGINLSGGQKQRIQIARPLYQDADIFLLDDPFSPVDDHTG--AHLFK 523
L G T +GE+G LSGGQKQR+ IAR L ++ + +LD+ S +D +
Sbjct: 134 SELASGYDTEVGEKGSQLSGGQKQRVAIARALIRNPQVLILDEATSALDAESEQQVQQAL 193
Query: 524 FCWVSSSKTVIYATHQVEFLPAADLILVIKDGKI 557
+ W +TV+ H++ + AD ILV+ G+I
Sbjct: 194 YDW-PERRTVLVIAHRLSTVERADQILVLDGGRI 226
|
TAP (Transporter Associated with Antigen Processing) is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules. Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes. Length = 226 |
| >gnl|CDD|234033 TIGR02857, CydD, thiol reductant ABC exporter, CydD subunit | Back alignment and domain information |
|---|
Score = 95.4 bits (238), Expect = 3e-20
Identities = 54/207 (26%), Positives = 96/207 (46%), Gaps = 24/207 (11%)
Query: 925 IPSEPALVIEATKPNNSRPSHGEVNIRHLQVRYAPNLPLVLRGRTGSGKSTLIQTLFRIV 984
+ + PA +E + + + P +R + P + L G +G+GKSTL+ L V
Sbjct: 314 VTAAPAPSLEFSGVSVAYPGRRPA-LRPVSFTVPPGERVALVGPSGAGKSTLLNLLLGFV 372
Query: 985 ESTAGHILIDGKDISLIGLHDLRTRLSIIPQDPTMFEGTTRSNL---DPLEEHADEQIWE 1041
+ T G I ++G ++ R +++ +PQ P +F GT N+ P + +D +I E
Sbjct: 373 DPTEGSIAVNGVPLADADADSWRDQIAWVPQHPFLFAGTIAENIRLARP--DASDAEIRE 430
Query: 1042 ALDKCQLGDEVRKKKGKLDSQ------------------GRVLLKKSKVLVLDEATASVD 1083
AL++ L + V LD+ R L+ + +L+LDE TA +D
Sbjct: 431 ALERAGLDEFVAALPQGLDTPIGEGGAGLSGGQAQRLALARAFLRDAPLLLLDEPTAHLD 490
Query: 1084 TATDNQIQQTLRQHFSDCTVVTIAHRI 1110
T+ ++ + LR TV+ + HR+
Sbjct: 491 AETEAEVLEALRALAQGRTVLLVTHRL 517
|
The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex. Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD. Length = 529 |
| >gnl|CDD|226361 COG3842, PotA, ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 93.5 bits (233), Expect = 3e-20
Identities = 64/216 (29%), Positives = 92/216 (42%), Gaps = 41/216 (18%)
Query: 373 NPTLRNINLKVFHGMRVAVCGTVGSGKSSCLSCILGGVPKESGIIRLCGTKA-------- 424
+ +I+L + G V + G G GK++ L I G SG I L G
Sbjct: 18 FTAVDDISLDIKKGEFVTLLGPSGCGKTTLLRMIAGFEQPSSGEILLDGEDITDVPPEKR 77
Query: 425 ---YVAQSPWIQSGK-IEENILFGKEMDR-----ERYERVLEACSLKKDLEVLPFGDQTI 475
V QS + +EEN+ FG ++ + E RV EA L V G
Sbjct: 78 PIGMVFQSYALFPHMTVEENVAFGLKVRKKLKKAEIKARVEEALEL-----VGLEG---- 128
Query: 476 IGERGIN-LSGGQKQRIQIARPLYQDADIFLLDDPFSPVDDHTGAHL--------FKFCW 526
+R + LSGGQ+QR+ +AR L + + LLD+P S +D + +
Sbjct: 129 FADRKPHQLSGGQQQRVALARALVPEPKVLLLDEPLSALDAKLREQMRKELKELQREL-- 186
Query: 527 VSSSKTVIYATH-QVEFLPAADLILVIKDGKITQAG 561
T +Y TH Q E L +D I V+ DG+I Q G
Sbjct: 187 ---GITFVYVTHDQEEALAMSDRIAVMNDGRIEQVG 219
|
Length = 352 |
| >gnl|CDD|213222 cd03255, ABC_MJ0796_LolCDE_FtsE, ATP-binding cassette domain of the transporters involved in export of lipoprotein and macrolide, and cell division protein | Back alignment and domain information |
|---|
Score = 90.2 bits (225), Expect = 3e-20
Identities = 67/214 (31%), Positives = 94/214 (43%), Gaps = 43/214 (20%)
Query: 374 PTLRNINLKVFHGMRVAVCGTVGSGKSSCLSCILGGVPK-ESGIIRLCGTKA-------- 424
L+ ++L + G VA+ G GSGKS+ L+ ILGG+ + SG +R+ GT
Sbjct: 18 QALKGVSLSIEKGEFVAIVGPSGSGKSTLLN-ILGGLDRPTSGEVRVDGTDISKLSEKEL 76
Query: 425 ---------YVAQSP-WIQSGKIEENILFG-------KEMDRERYERVLEACSLKKDLEV 467
+V QS + EN+ K+ RER E +LE L L
Sbjct: 77 AAFRRRHIGFVFQSFNLLPDLTALENVELPLLLAGVPKKERRERAEELLERVGLGDRLNH 136
Query: 468 LPFGDQTIIGERGINLSGGQKQRIQIARPLYQDADIFLLDDPFSPVDDHTGAH----LFK 523
P LSGGQ+QR+ IAR L D I L D+P +D TG L +
Sbjct: 137 YPS-----------ELSGGQQQRVAIARALANDPKIILADEPTGNLDSETGKEVMELLRE 185
Query: 524 FCWVSSSKTVIYATHQVEFLPAADLILVIKDGKI 557
+ T++ TH E AD I+ ++DGKI
Sbjct: 186 LN-KEAGTTIVVVTHDPELAEYADRIIELRDGKI 218
|
This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of lipoproteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyzes the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane. Length = 218 |
| >gnl|CDD|236870 PRK11174, PRK11174, cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed | Back alignment and domain information |
|---|
Score = 95.3 bits (238), Expect = 4e-20
Identities = 50/215 (23%), Positives = 92/215 (42%), Gaps = 37/215 (17%)
Query: 963 LVLRGRTGSGKSTLIQTL-----FRIVESTAGHILIDGKDISLIGLHDLRTRLSIIPQDP 1017
+ L G +G+GK++L+ L ++ G + I+G ++ + R LS + Q+P
Sbjct: 379 IALVGPSGAGKTSLLNALLGFLPYQ------GSLKINGIELRELDPESWRKHLSWVGQNP 432
Query: 1018 TMFEGTTRSNLDPLEEHA-DEQIWEALDKCQLGDEVRKKKGKLDSQ-------------- 1062
+ GT R N+ A DEQ+ +AL+ + + + LD+
Sbjct: 433 QLPHGTLRDNVLLGNPDASDEQLQQALENAWVSEFLPLLPQGLDTPIGDQAAGLSVGQAQ 492
Query: 1063 ----GRVLLKKSKVLVLDEATASVDTATDNQIQQTLRQHFSDCTVVTIAHRITSVLDSAM 1118
R LL+ ++L+LDE TAS+D ++ + Q L T + + H++ +
Sbjct: 493 RLALARALLQPCQLLLLDEPTASLDAHSEQLVMQALNAASRRQTTLMVTHQLEDLAQWDQ 552
Query: 1119 VLLLNHGLIKE---YDSPTKLLENKSSSFAQLVAE 1150
+ ++ G I + Y L FA L+A
Sbjct: 553 IWVMQDGQIVQQGDYAE----LSQAGGLFATLLAH 583
|
Length = 588 |
| >gnl|CDD|183016 PRK11176, PRK11176, lipid transporter ATP-binding/permease protein; Provisional | Back alignment and domain information |
|---|
Score = 95.5 bits (238), Expect = 5e-20
Identities = 72/244 (29%), Positives = 117/244 (47%), Gaps = 30/244 (12%)
Query: 358 IEIIDGSFSWDFSSPNPTLRNINLKVFHGMRVAVCGTVGSGKSSCLSCILGGVPKESGII 417
IE + +F++ P LRNIN K+ G VA+ G GSGKS+ + + + G I
Sbjct: 342 IEFRNVTFTYP-GKEVPALRNINFKIPAGKTVALVGRSGSGKSTIANLLTRFYDIDEGEI 400
Query: 418 RLCGTK-------------AYVAQSPWIQSGKIEENILFGKE--MDRERYERVLEACSLK 462
L G A V+Q+ + + I NI + + RE+ E
Sbjct: 401 LLDGHDLRDYTLASLRNQVALVSQNVHLFNDTIANNIAYARTEQYSREQIEEAARMAYAM 460
Query: 463 KDLEVLPFGDQTIIGERGINLSGGQKQRIQIARPLYQDADIFLLDDPFSPVDDHT----G 518
+ + G T+IGE G+ LSGGQ+QRI IAR L +D+ I +LD+ S +D +
Sbjct: 461 DFINKMDNGLDTVIGENGVLLSGGQRQRIAIARALLRDSPILILDEATSALDTESERAIQ 520
Query: 519 AHLFKFCWVSSSKTVIYATHQVEFLPAADLILVIKDGKITQAGKYSDILNSGTDFMELVG 578
A L + + ++T + H++ + AD ILV++DG+I + G ++++L G
Sbjct: 521 AALDE---LQKNRTSLVIAHRLSTIEKADEILVVEDGEIVERGTHAELL-------AQNG 570
Query: 579 AHKQ 582
+ Q
Sbjct: 571 VYAQ 574
|
Length = 582 |
| >gnl|CDD|224054 COG1131, CcmA, ABC-type multidrug transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 91.2 bits (227), Expect = 6e-20
Identities = 56/191 (29%), Positives = 97/191 (50%), Gaps = 21/191 (10%)
Query: 967 GRTGSGKSTLIQTLFRIVESTAGHILIDGKDISLIGLHDLRTRLSIIPQDPTMFEGTT-R 1025
G G+GK+TL++ L +++ T+G IL+ G D+ +R R+ +PQ+P+++ T R
Sbjct: 38 GPNGAGKTTLLKILAGLLKPTSGEILVLGYDVV-KEPAKVRRRIGYVPQEPSLYPELTVR 96
Query: 1026 SNLD-------PLEEHADEQIWEALDKCQLGDEVRKKKGKLDSQG--------RVLLKKS 1070
NL+ +E A+E+I E L+ L D+ KK L S G LL
Sbjct: 97 ENLEFFARLYGLSKEEAEERIEELLELFGLEDKANKKVRTL-SGGMKQRLSIALALLHDP 155
Query: 1071 KVLVLDEATASVDTATDNQIQQTLRQHFSD--CTVVTIAHRITSVLDSA-MVLLLNHGLI 1127
++L+LDE T+ +D + +I + LR+ + T++ H + + V++LN G I
Sbjct: 156 ELLILDEPTSGLDPESRREIWELLRELAKEGGVTILLSTHILEEAEELCDRVIILNDGKI 215
Query: 1128 KEYDSPTKLLE 1138
+P +L E
Sbjct: 216 IAEGTPEELKE 226
|
Length = 293 |
| >gnl|CDD|237452 PRK13632, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 90.1 bits (224), Expect = 1e-19
Identities = 70/240 (29%), Positives = 119/240 (49%), Gaps = 33/240 (13%)
Query: 353 NSDTAIEIIDGSFSWDFSSPNPTLRNINLKVFHGMRVAVCGTVGSGKSSCLSCILGGVPK 412
N I++ + SFS+ S N L+N++ ++ G VA+ G GSGKS+ +S IL G+ K
Sbjct: 3 NKSVMIKVENVSFSYPNSE-NNALKNVSFEINEGEYVAILGHNGSGKST-ISKILTGLLK 60
Query: 413 -ESGIIRLCGTK-------------AYVAQSPWIQ--SGKIEENILFG---KEMDRERYE 453
+SG I++ G + Q+P Q +E++I FG K++ ++ +
Sbjct: 61 PQSGEIKIDGITISKENLKEIRKKIGIIFQNPDNQFIGATVEDDIAFGLENKKVPPKKMK 120
Query: 454 RVLEACSLKKDLEVLPFGDQTIIGERGINLSGGQKQRIQIARPLYQDADIFLLDDPFSPV 513
+++ + K +E + + NLSGGQKQR+ IA L + +I + D+ S +
Sbjct: 121 DIIDDLAKKVGME-------DYLDKEPQNLSGGQKQRVAIASVLALNPEIIIFDESTSML 173
Query: 514 DDHTGAHLFKFCWVS----SSKTVIYATHQVEFLPAADLILVIKDGKITQAGKYSDILNS 569
D + K V KT+I TH ++ AD ++V +GK+ GK +ILN+
Sbjct: 174 DPKGKREIKKIM-VDLRKTRKKTLISITHDMDEAILADKVIVFSEGKLIAQGKPKEILNN 232
|
Length = 271 |
| >gnl|CDD|233209 TIGR00958, 3a01208, Conjugate Transporter-2 (CT2) Family protein | Back alignment and domain information |
|---|
Score = 94.0 bits (234), Expect = 2e-19
Identities = 66/230 (28%), Positives = 116/230 (50%), Gaps = 27/230 (11%)
Query: 941 SRPSHGEVNI-RHLQVRYAPNLPLVLRGRTGSGKSTLIQTLFRIVESTAGHILIDGKDIS 999
S P+ +V + + L P + L G +GSGKST+ L + + T G +L+DG +
Sbjct: 487 SYPNRPDVPVLKGLTFTLHPGEVVALVGPSGSGKSTVAALLQNLYQPTGGQVLLDGVPLV 546
Query: 1000 LIGLHDLRTRLSIIPQDPTMFEGTTRSNLD-PLEEHADEQIWEALDKCQLGDEVRK---- 1054
H L +++++ Q+P +F G+ R N+ L + DE+I A D + +
Sbjct: 547 QYDHHYLHRQVALVGQEPVLFSGSVRENIAYGLTDTPDEEIMAAAKAANAHDFIMEFPNG 606
Query: 1055 ------KKGKLDSQG--------RVLLKKSKVLVLDEATASVDTATDNQIQQTLRQ--HF 1098
+KG S G R L++K +VL+LDEAT +A D + +Q L++
Sbjct: 607 YDTEVGEKGSQLSGGQKQRIAIARALVRKPRVLILDEAT----SALDAECEQLLQESRSR 662
Query: 1099 SDCTVVTIAHRITSVLDSAMVLLLNHGLIKEYDSPTKLLENKSSSFAQLV 1148
+ TV+ IAHR+++V + +L+L G + E + +L+E++ + LV
Sbjct: 663 ASRTVLLIAHRLSTVERADQILVLKKGSVVEMGTHKQLMEDQ-GCYKHLV 711
|
[Transport and binding proteins, Other]. Length = 711 |
| >gnl|CDD|213181 cd03214, ABC_Iron-Siderophores_B12_Hemin, ATP-binding component of iron-siderophores, vitamin B12 and hemin transporters and related proteins | Back alignment and domain information |
|---|
Score = 86.7 bits (216), Expect = 2e-19
Identities = 55/206 (26%), Positives = 81/206 (39%), Gaps = 60/206 (29%)
Query: 376 LRNINLKVFHGMRVAVCGTVGSGKSSCLSCILGGVPKESGIIRLCGTK------------ 423
L +++L + G V + G G+GKS+ L + G + SG I L G
Sbjct: 15 LDDLSLSIEAGEIVGILGPNGAGKSTLLKTLAGLLKPSSGEILLDGKDLASLSPKELARK 74
Query: 424 -AYVAQSPWIQSGKIEENILFGKEMDRERYERVLEACSLKKDLEVLPFGDQTIIGERGIN 482
AYV Q LE L + D R N
Sbjct: 75 IAYVPQ--------------------------ALEL------LGLAHLAD------RPFN 96
Query: 483 -LSGGQKQRIQIARPLYQDADIFLLDDPFSPVDDHTGAHLFKFCWV-----SSSKTVIYA 536
LSGG++QR+ +AR L Q+ I LLD+P S +D L + + KTV+
Sbjct: 97 ELSGGERQRVLLARALAQEPPILLLDEPTSHLDIAHQIELLEL--LRRLARERGKTVVMV 154
Query: 537 THQVEF-LPAADLILVIKDGKITQAG 561
H + AD ++++KDG+I G
Sbjct: 155 LHDLNLAARYADRVILLKDGRIVAQG 180
|
ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters. Length = 180 |
| >gnl|CDD|224059 COG1136, SalX, ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 87.9 bits (219), Expect = 2e-19
Identities = 61/208 (29%), Positives = 99/208 (47%), Gaps = 26/208 (12%)
Query: 374 PTLRNINLKVFHGMRVAVCGTVGSGKSSCLSCILGGVPK-ESGIIRLCGTK--------- 423
L+++NL++ G VA+ G GSGKS+ L+ +LGG+ K SG + + G
Sbjct: 19 EALKDVNLEIEAGEFVAIVGPSGSGKSTLLN-LLGGLDKPTSGEVLINGKDLTKLSEKEL 77
Query: 424 --------AYVAQS-PWIQSGKIEENILFGKEMDRERYERVLEACSLKKDLEVLPFGDQT 474
+V Q+ + + EN+ + + R A ++ LEVL D+
Sbjct: 78 AKLRRKKIGFVFQNFNLLPDLTVLENVELPLLIAGKSAGRRKRA--AEELLEVLGLEDR- 134
Query: 475 IIGERGINLSGGQKQRIQIARPLYQDADIFLLDDPFSPVDDHTGAHLFKFC---WVSSSK 531
++ ++ LSGGQ+QR+ IAR L + I L D+P +D T + + K
Sbjct: 135 LLKKKPSELSGGQQQRVAIARALINNPKIILADEPTGNLDSKTAKEVLELLRELNKERGK 194
Query: 532 TVIYATHQVEFLPAADLILVIKDGKITQ 559
T+I TH E AD ++ +KDGKI +
Sbjct: 195 TIIMVTHDPELAKYADRVIELKDGKIEE 222
|
Length = 226 |
| >gnl|CDD|224046 COG1121, ZnuC, ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 86.9 bits (216), Expect = 8e-19
Identities = 66/267 (24%), Positives = 109/267 (40%), Gaps = 43/267 (16%)
Query: 354 SDTAIEIIDGSFSWDFSSPNPTLRNINLKVFHGMRVAVCGTVGSGKSSCLSCILGGVPKE 413
IE+ + + S+ P L +I+L V G A+ G G+GKS+ L ILG +
Sbjct: 1 MMPMIEVENLTVSYG---NRPVLEDISLSVEKGEITALIGPNGAGKSTLLKAILGLLKPS 57
Query: 414 SGIIRLCGTK----------AYVAQSPWI------------QSGKIEENILFGK--EMDR 449
SG I++ G YV Q + G+ + F + + D+
Sbjct: 58 SGEIKIFGKPVRKRRKRLRIGYVPQKSSVDRSFPITVKDVVLLGRYGKKGWFRRLNKKDK 117
Query: 450 ERYERVLEACSLKKDLEVLPFGDQTIIGERGINLSGGQKQRIQIARPLYQDADIFLLDDP 509
E+ + LE + + D+ I GE LSGGQKQR+ +AR L Q+ D+ LLD+P
Sbjct: 118 EKVDEALER------VGMEDLRDRQI-GE----LSGGQKQRVLLARALAQNPDLLLLDEP 166
Query: 510 FSPVDDHTGAHLFKFC--WVSSSKTVIYATHQVEFLPA-ADLILVIKDGKITQAGKYSDI 566
F+ VD ++ KTV+ TH + + A D ++ + + +G ++
Sbjct: 167 FTGVDVAGQKEIYDLLKELRQEGKTVLMVTHDLGLVMAYFDRVICLN-RHLIASGPPEEV 225
Query: 567 LNSGTDFMELVGAHKQALSGLDSIDRG 593
L + + G
Sbjct: 226 LTE-ENLEKAFGGSLAHALAGYRHHHD 251
|
Length = 254 |
| >gnl|CDD|213214 cd03247, ABCC_cytochrome_bd, ATP-binding cassette domain of CydCD, subfamily C | Back alignment and domain information |
|---|
Score = 85.1 bits (211), Expect = 8e-19
Identities = 60/210 (28%), Positives = 92/210 (43%), Gaps = 38/210 (18%)
Query: 358 IEIIDGSFSWDFSSPNPTLRNINLKVFHGMRVAVCGTVGSGKSSCLSCILGGVPKESGII 417
+ I + SFS+ L+N++L++ G ++A+ G GSGKS+ L + G + + G I
Sbjct: 1 LSINNVSFSYP-EQEQQVLKNLSLELKQGEKIALLGRSGSGKSTLLQLLTGDLKPQQGEI 59
Query: 418 RLCGTKAYVAQSPWIQSGKIEENILFGKEMDRERYERVLEACSLKKDLEVLP-----FGD 472
L G + +L + VL F D
Sbjct: 60 TLDGVPVSDLE------------------------------KALSSLISVLNQRPYLF-D 88
Query: 473 QTIIGERGINLSGGQKQRIQIARPLYQDADIFLLDDPFSPVDDHTGAHLFK-FCWVSSSK 531
T+ G SGG++QR+ +AR L QDA I LLD+P +D T L V K
Sbjct: 89 TTLRNNLGRRFSGGERQRLALARILLQDAPIVLLDEPTVGLDPITERQLLSLIFEVLKDK 148
Query: 532 TVIYATHQVEFLPAADLILVIKDGKITQAG 561
T+I+ TH + + D IL +++GKI G
Sbjct: 149 TLIWITHHLTGIEHMDKILFLENGKIIMQG 178
|
The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilis, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism. Length = 178 |
| >gnl|CDD|227590 COG5265, ATM1, ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 90.1 bits (224), Expect = 2e-18
Identities = 72/238 (30%), Positives = 119/238 (50%), Gaps = 23/238 (9%)
Query: 357 AIEIIDGSFSWDFSSPNPTLRNINLKVFHGMRVAVCGTVGSGKSSCLSCILGGVPKESGI 416
A+ I+ SF++D P L I+ + G VA+ G G+GKS+ L + SG
Sbjct: 262 AVAFINVSFAYDPRRPI--LNGISFTIPLGKTVAIVGESGAGKSTILRLLFRFYDVNSGS 319
Query: 417 IRLCG------TKAY-------VAQSPWIQSGKIEENILFGKE-MDRERYERVLEACSLK 462
I + G T+ V Q + + I NI +G+ E EA +
Sbjct: 320 ITIDGQDIRDVTQQSLRRAIGIVPQDTVLFNDTIAYNIKYGRPDATAEEVGAAAEAAQIH 379
Query: 463 KDLEVLPFGDQTIIGERGINLSGGQKQRIQIARPLYQDADIFLLDDPFSPVDDHT----G 518
++ LP G T +GERG+ LSGG+KQR+ IAR + ++ I +LD+ S +D HT
Sbjct: 380 DFIQSLPEGYDTGVGERGLKLSGGEKQRVAIARTILKNPPILILDEATSALDTHTEQAIQ 439
Query: 519 AHLFKFCWVSSSKTVIYATHQVEFLPAADLILVIKDGKITQAGKYSDILNSGTDFMEL 576
A L + VS+ +T + H++ + AD I+V+ +G+I + G + ++L +G + E+
Sbjct: 440 AALRE---VSAGRTTLVIAHRLSTIIDADEIIVLDNGRIVERGTHEELLAAGGLYAEM 494
|
Length = 497 |
| >gnl|CDD|224054 COG1131, CcmA, ABC-type multidrug transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 86.6 bits (215), Expect = 3e-18
Identities = 61/289 (21%), Positives = 101/289 (34%), Gaps = 59/289 (20%)
Query: 376 LRNINLKVFHGMRVAVCGTVGSGKSSCLSCILGGVPKESGIIRLCGTK------------ 423
L ++ +V G + G G+GK++ L + G + SG I + G
Sbjct: 21 LDGVSFEVEPGEIFGLLGPNGAGKTTLLKILAGLLKPTSGEILVLGYDVVKEPAKVRRRI 80
Query: 424 AYVAQS----PWIQSGKIEENILF-------GKEMDRERYERVLEACSLKKDLEVLPFGD 472
YV Q P + + EN+ F KE ER E +LE L+
Sbjct: 81 GYVPQEPSLYPEL---TVRENLEFFARLYGLSKEEAEERIEELLELFGLEDKANKKVRT- 136
Query: 473 QTIIGERGINLSGGQKQRIQIARPLYQDADIFLLDDPFSPVDDHTGAHLFKFCWVSS--- 529
LSGG KQR+ IA L D ++ +LD+P S +D + +
Sbjct: 137 ----------LSGGMKQRLSIALALLHDPELLILDEPTSGLDPES-RREIW-ELLRELAK 184
Query: 530 --SKTVIYATHQ---VEFLPAADLILVIKDGKITQAGKYSDILNSGTDFMELVGAHKQAL 584
T++ +TH E L D ++++ DGKI G ++ +
Sbjct: 185 EGGVTILLSTHILEEAEEL--CDRVIILNDGKIIAEGTPEELKEKFGGKGVIE------- 235
Query: 585 SGLDSIDRGPVSERKSINKENDGTSTTNEIVNKEENKNFQSDDEAALPK 633
+R ++E K G EI+ + + +
Sbjct: 236 ---LEPERLELAELLEGLKLVKGEEELAEILEALLEEGVKIESIEVKEP 281
|
Length = 293 |
| >gnl|CDD|213214 cd03247, ABCC_cytochrome_bd, ATP-binding cassette domain of CydCD, subfamily C | Back alignment and domain information |
|---|
Score = 83.1 bits (206), Expect = 4e-18
Identities = 51/205 (24%), Positives = 88/205 (42%), Gaps = 52/205 (25%)
Query: 948 VNIRHLQVRYAPNLPLVLR---------------GRTGSGKSTLIQTLFRIVESTAGHIL 992
++I ++ Y VL+ GR+GSGKSTL+Q L ++ G I
Sbjct: 1 LSINNVSFSYPEQEQQVLKNLSLELKQGEKIALLGRSGSGKSTLLQLLTGDLKPQQGEIT 60
Query: 993 IDGKDISLIGLHDLRTRLSIIPQDPTMFEGTTRSNLDPLEEHADEQIWEALDKCQLGDEV 1052
+DG +S + L + +S++ Q P +F+ T R+NL
Sbjct: 61 LDGVPVSDLE-KALSSLISVLNQRPYLFDTTLRNNL------------------------ 95
Query: 1053 RKKKGKLDSQG--------RVLLKKSKVLVLDEATASVDTATDNQIQQTLRQHFSDCTVV 1104
G+ S G R+LL+ + +++LDE T +D T+ Q+ + + D T++
Sbjct: 96 ----GRRFSGGERQRLALARILLQDAPIVLLDEPTVGLDPITERQLLSLIFEVLKDKTLI 151
Query: 1105 TIAHRITSVLDSAMVLLLNHGLIKE 1129
I H +T + +L L +G I
Sbjct: 152 WITHHLTGIEHMDKILFLENGKIIM 176
|
The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilis, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism. Length = 178 |
| >gnl|CDD|183056 PRK11248, tauB, taurine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 84.8 bits (210), Expect = 6e-18
Identities = 61/200 (30%), Positives = 94/200 (47%), Gaps = 34/200 (17%)
Query: 374 PTLRNINLKVFHGMRVAVCGTVGSGKSSCLSCILGGVPKESGIIRLCGT--------KAY 425
P L +INL + G + V G G GK++ L+ I G VP + G I L G +
Sbjct: 15 PALEDINLTLESGELLVVLGPSGCGKTTLLNLIAGFVPYQHGSITLDGKPVEGPGAERGV 74
Query: 426 VAQS----PWIQSGKIEENILFGKE---MDRERYERVLEACSLKKDLEVLPFGDQTIIGE 478
V Q+ PW +++N+ FG + +++ + + K LE +
Sbjct: 75 VFQNEGLLPWRN---VQDNVAFGLQLAGVEKMQRLEIAHQMLKKVGLEGA--------EK 123
Query: 479 RGI-NLSGGQKQRIQIARPLYQDADIFLLDDPFSPVDDHTGAH---LFKFCWVSSSKTVI 534
R I LSGGQ+QR+ IAR L + + LLD+PF +D T L W + K V+
Sbjct: 124 RYIWQLSGGQRQRVGIARALAANPQLLLLDEPFGALDAFTREQMQTLLLKLWQETGKQVL 183
Query: 535 YATHQVE---FLPAADLILV 551
TH +E F+ A +L+L+
Sbjct: 184 LITHDIEEAVFM-ATELVLL 202
|
Length = 255 |
| >gnl|CDD|182732 PRK10789, PRK10789, putative multidrug transporter membrane\ATP-binding components; Provisional | Back alignment and domain information |
|---|
Score = 87.8 bits (218), Expect = 1e-17
Identities = 55/209 (26%), Positives = 103/209 (49%), Gaps = 24/209 (11%)
Query: 938 PNNSRPSHGEVNIRHLQVRYAPNLPLVLRGRTGSGKSTLIQTLFRIVESTAGHILIDGKD 997
P P+ + ++ P L + G TGSGKSTL+ + R + + G I
Sbjct: 324 PQTDHPA-----LENVNFTLKPGQMLGICGPTGSGKSTLLSLIQRHFDVSEGDIRFHDIP 378
Query: 998 ISLIGLHDLRTRLSIIPQDPTMFEGTTRSNLDPLEEHA-DEQIWEALDKCQLGDEVRK-- 1054
++ + L R+RL+++ Q P +F T +N+ A ++I + D++ +
Sbjct: 379 LTKLQLDSWRSRLAVVSQTPFLFSDTVANNIALGRPDATQQEIEHVARLASVHDDILRLP 438
Query: 1055 --------KKGKLDSQG--------RVLLKKSKVLVLDEATASVDTATDNQIQQTLRQHF 1098
++G + S G R LL +++L+LD+A ++VD T++QI LRQ
Sbjct: 439 QGYDTEVGERGVMLSGGQKQRISIARALLLNAEILILDDALSAVDGRTEHQILHNLRQWG 498
Query: 1099 SDCTVVTIAHRITSVLDSAMVLLLNHGLI 1127
TV+ AHR++++ +++ +L++ HG I
Sbjct: 499 EGRTVIISAHRLSALTEASEILVMQHGHI 527
|
Length = 569 |
| >gnl|CDD|213262 cd03295, ABC_OpuCA_Osmoprotection, ATP-binding cassette domain of the osmoprotectant transporter | Back alignment and domain information |
|---|
Score = 83.1 bits (206), Expect = 1e-17
Identities = 74/245 (30%), Positives = 112/245 (45%), Gaps = 39/245 (15%)
Query: 358 IEIIDGSFSWDFSSPNPTLRNINLKVFHGMRVAVCGTVGSGKSSCLSCILGGVPKESGII 417
IE + + + + N+NL++ G + + G GSGK++ + I + SG I
Sbjct: 1 IEFENVTKR--YGGGKKAVNNLNLEIAKGEFLVLIGPSGSGKTTTMKMINRLIEPTSGEI 58
Query: 418 RLCGTK-------------AYVAQSPWIQSG-----KIEENI-LFGK--EMDRERY-ERV 455
+ G YV Q Q G +EENI L K + +E+ ER
Sbjct: 59 FIDGEDIREQDPVELRRKIGYVIQ----QIGLFPHMTVEENIALVPKLLKWPKEKIRERA 114
Query: 456 LEACSLKKDLEVLPFGDQTIIGERGINLSGGQKQRIQIARPLYQDADIFLLDDPFSPVDD 515
E +L L+ F D+ E LSGGQ+QR+ +AR L D + L+D+PF +D
Sbjct: 115 DELLALV-GLDPAEFADR-YPHE----LSGGQQQRVGVARALAADPPLLLMDEPFGALDP 168
Query: 516 HTGAHL---FKFCWVSSSKTVIYATHQV-EFLPAADLILVIKDGKITQAGKYSDILNS-G 570
T L FK KT+++ TH + E AD I ++K+G+I Q G +IL S
Sbjct: 169 ITRDQLQEEFKRLQQELGKTIVFVTHDIDEAFRLADRIAIMKNGEIVQVGTPDEILRSPA 228
Query: 571 TDFME 575
DF+
Sbjct: 229 NDFVA 233
|
OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment. ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 242 |
| >gnl|CDD|213196 cd03229, ABC_Class3, ATP-binding cassette domain of the binding protein-dependent transport systems | Back alignment and domain information |
|---|
Score = 81.5 bits (202), Expect = 1e-17
Identities = 54/188 (28%), Positives = 83/188 (44%), Gaps = 32/188 (17%)
Query: 376 LRNINLKVFHGMRVAVCGTVGSGKSSCLSCILGGVPKESGIIRLCGTKAYVAQSPWIQSG 435
L +++L + G VA+ G GSGKS+ L CI G SG
Sbjct: 16 LNDVSLNIEAGEIVALLGPSGSGKSTLLRCIAGLE--------------------EPDSG 55
Query: 436 KIEENILFGKEMDRERYERVLEACSLK---KDLEVLPFGDQTIIGERGINLSGGQKQRIQ 492
I + G+++ E + +D + P T++ + LSGGQ+QR+
Sbjct: 56 SIL---IDGEDLTDLEDELPPLRRRIGMVFQDFALFP--HLTVLENIALGLSGGQQQRVA 110
Query: 493 IARPLYQDADIFLLDDPFSPVDDHTGAH---LFKFCWVSSSKTVIYATHQVEFLPA-ADL 548
+AR L D D+ LLD+P S +D T L K TV+ TH ++ AD
Sbjct: 111 LARALAMDPDVLLLDEPTSALDPITRREVRALLKSLQAQLGITVVLVTHDLDEAARLADR 170
Query: 549 ILVIKDGK 556
++V++DGK
Sbjct: 171 VVVLRDGK 178
|
This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 178 |
| >gnl|CDD|226360 COG3840, ThiQ, ABC-type thiamine transport system, ATPase component [Coenzyme metabolism] | Back alignment and domain information |
|---|
Score = 82.8 bits (205), Expect = 2e-17
Identities = 62/212 (29%), Positives = 91/212 (42%), Gaps = 34/212 (16%)
Query: 380 NLKVFHGMRVAVCGTVGSGKSSCLSCILGGVPKESGIIRLCG---TKAYVAQSP---WIQ 433
+L V G VA+ G G+GKS+ L+ I G SG I + G T + A+ P Q
Sbjct: 19 DLTVPAGEIVAILGPSGAGKSTLLNLIAGFETPASGEILINGVDHTASPPAERPVSMLFQ 78
Query: 434 SGK------IEENILFG-------KEMDRERYERVLEACSLKKDLEVLPFGDQTIIGERG 480
+ +NI G RE+ E L L+ LP GE
Sbjct: 79 ENNLFAHLTVAQNIGLGLSPGLKLNAEQREKVEAAAAQVGLAGFLKRLP-------GE-- 129
Query: 481 INLSGGQKQRIQIARPLYQDADIFLLDDPFSPVDD---HTGAHLFKFCWVSSSKTVIYAT 537
LSGGQ+QR+ +AR L ++ I LLD+PFS +D L T++ T
Sbjct: 130 --LSGGQRQRVALARCLVREQPILLLDEPFSALDPALRAEMLALVSQLCDERKMTLLMVT 187
Query: 538 HQVEFLPA-ADLILVIKDGKITQAGKYSDILN 568
H E AD ++ + +G+I G ++L+
Sbjct: 188 HHPEDAARIADRVVFLDNGRIAAQGSTQELLS 219
|
Length = 231 |
| >gnl|CDD|213197 cd03230, ABC_DR_subfamily_A, ATP-binding cassette domain of the drug resistance transporter and related proteins, subfamily A | Back alignment and domain information |
|---|
Score = 80.9 bits (201), Expect = 2e-17
Identities = 44/185 (23%), Positives = 86/185 (46%), Gaps = 30/185 (16%)
Query: 376 LRNINLKVFHGMRVAVCGTVGSGKSSCLSCILGGVPKESGIIRLCGTKAYVAQSPWIQSG 435
L +I+L V G + G G+GK++ + ILG + +SG I++ G + +
Sbjct: 16 LDDISLTVEKGEIYGLLGPNGAGKTTLIKIILGLLKPDSGEIKVLG------KDIKKEPE 69
Query: 436 KIEENILFGKEMDRERYERVLEACSLKKDLEVLPFGDQTIIGERGINLSGGQKQRIQIAR 495
+++ I + + E SL ++L V + LSGG KQR+ +A+
Sbjct: 70 EVKRRIGY-----------LPEEPSLYENLTVREN----------LKLSGGMKQRLALAQ 108
Query: 496 PLYQDADIFLLDDPFSPVDDHTGAHLFKFC--WVSSSKTVIYATHQVEFLPA-ADLILVI 552
L D ++ +LD+P S +D + ++ KT++ ++H +E D + ++
Sbjct: 109 ALLHDPELLILDEPTSGLDPESRREFWELLRELKKEGKTILLSSHILEEAERLCDRVAIL 168
Query: 553 KDGKI 557
+G+I
Sbjct: 169 NNGRI 173
|
This family of ATP-binding proteins belongs to a multi-subunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryotic systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 173 |
| >gnl|CDD|130041 TIGR00968, 3a0106s01, sulfate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 82.5 bits (204), Expect = 2e-17
Identities = 73/232 (31%), Positives = 106/232 (45%), Gaps = 42/232 (18%)
Query: 376 LRNINLKVFHGMRVAVCGTVGSGKSSCLSCILGGVPKESGIIRLCGTKA----------- 424
L ++NL+V G VA+ G GSGKS+ L I G +SG IRL G A
Sbjct: 16 LDDVNLEVPTGSLVALLGPSGSGKSTLLRIIAGLEQPDSGRIRLNGQDATRVHARDRKIG 75
Query: 425 YVAQS-PWIQSGKIEENILFG-------KEMDRERYERVLEACSLKKDLEVLPFGDQTII 476
+V Q + + +NI FG K + R E +LE L+ +
Sbjct: 76 FVFQHYALFKHLTVRDNIAFGLEIRKHPKAKIKARVEELLELVQLEG------------L 123
Query: 477 GERGIN-LSGGQKQRIQIARPLYQDADIFLLDDPFSPVDDHTGAHLFKFCWVSS-----S 530
G+R N LSGGQ+QR+ +AR L + + LLD+PF +D L W+
Sbjct: 124 GDRYPNQLSGGQRQRVALARALAVEPQVLLLDEPFGALDAKVRKELRS--WLRKLHDEVH 181
Query: 531 KTVIYATH-QVEFLPAADLILVIKDGKITQAGKYSDIL-NSGTDF-MELVGA 579
T ++ TH Q E + AD I+V+ +GKI Q G ++ + F M +G
Sbjct: 182 VTTVFVTHDQEEAMEVADRIVVMSNGKIEQIGSPDEVYDHPANPFVMSFLGE 233
|
[Transport and binding proteins, Anions]. Length = 237 |
| >gnl|CDD|213179 cd00267, ABC_ATPase, ATP-binding cassette transporter nucleotide-binding domain | Back alignment and domain information |
|---|
Score = 79.6 bits (197), Expect = 3e-17
Identities = 52/199 (26%), Positives = 80/199 (40%), Gaps = 67/199 (33%)
Query: 950 IRHLQVRYAPNLPL-------------VLRGRTGSGKSTLIQTLFRIVESTAGHILIDGK 996
I +L RY L L G GSGKSTL++ + +++ T+G ILIDGK
Sbjct: 2 IENLSFRYGGRTALDNVSLTLKAGEIVALVGPNGSGKSTLLRAIAGLLKPTSGEILIDGK 61
Query: 997 DISLIGLHDLRTRLSIIPQDPTMFEGTTRSNLDPLEEHADEQIWEALDKCQLGDEVRKKK 1056
DI+ + L +LR R+ +PQ L
Sbjct: 62 DIAKLPLEELRRRIGYVPQ------------L---------------------------- 81
Query: 1057 GKLDSQG--------RVLLKKSKVLVLDEATASVDTATDNQIQQTLRQHFSD-CTVVTIA 1107
S G R LL +L+LDE T+ +D A+ ++ + LR+ + TV+ +
Sbjct: 82 ----SGGQRQRVALARALLLNPDLLLLDEPTSGLDPASRERLLELLRELAEEGRTVIIVT 137
Query: 1108 HRITSVLDSA-MVLLLNHG 1125
H +A V++L G
Sbjct: 138 HDPELAELAADRVIVLKDG 156
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 157 |
| >gnl|CDD|130260 TIGR01192, chvA, glucan exporter ATP-binding protein | Back alignment and domain information |
|---|
Score = 86.5 bits (214), Expect = 3e-17
Identities = 63/251 (25%), Positives = 119/251 (47%), Gaps = 22/251 (8%)
Query: 366 SWDFSSPNPTLRNINLKVFHGMRVAVCGTVGSGKSSCLSCILGGVPKESGIIRLCGTK-- 423
+++F++ + + +++ + G VA+ G G+GK++ ++ + G I + G
Sbjct: 341 TFEFANSSQGVFDVSFEAKAGQTVAIVGPTGAGKTTLINLLQRVYDPTVGQILIDGIDIN 400
Query: 424 -----------AYVAQSPWIQSGKIEENILFGKE--MDRERYERVLEACSLKKDLEVLPF 470
A V Q + + I ENI G+E D E YE +A + +
Sbjct: 401 TVTRESLRKSIATVFQDAGLFNRSIRENIRLGREGATDEEVYE-AAKAAAAHDFILKRSN 459
Query: 471 GDQTIIGERGINLSGGQKQRIQIARPLYQDADIFLLDDPFSPVDDHTGAHLFKFC-WVSS 529
G T++GERG LSGG++QR+ IAR + ++A I +LD+ S +D T A + +
Sbjct: 460 GYDTLVGERGNRLSGGERQRLAIARAILKNAPILVLDEATSALDVETEARVKNAIDALRK 519
Query: 530 SKTVIYATHQVEFLPAADLILVIKDGKITQAGKYSDILNSGTDFMELVGAHKQALSGLDS 589
++T H++ + ADL+L + G++ + G + +++ F +L+ SGL +
Sbjct: 520 NRTTFIIAHRLSTVRNADLVLFLDQGRLIEKGSFQELIQKDGRFYKLLRR-----SGLLT 574
Query: 590 IDRGPVSERKS 600
RK+
Sbjct: 575 NQPATKPLRKA 585
|
This model describes glucan exporter ATP binding protein in bacteria. It belongs to the larger ABC transporter superfamily with the characteristic ATP binding motif. The In general, this protein is in some ways implicated in osmoregulation and suggested to participate in the export of glucan from the cytoplasm to periplasm. The cyclic beta-1,2-glucan in the bactrerial periplasmic space is suggested to confer the property of high osmolority. It has also been demonstrated that mutants in this loci have lost functions of virulence and motility. It is unclear as to how virulence and osmoadaptaion are related [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 585 |
| >gnl|CDD|213223 cd03256, ABC_PhnC_transporter, ATP-binding cassette domain of the binding protein-dependent phosphonate transport system | Back alignment and domain information |
|---|
Score = 81.8 bits (203), Expect = 3e-17
Identities = 61/222 (27%), Positives = 96/222 (43%), Gaps = 55/222 (24%)
Query: 376 LRNINLKVFHGMRVAVCGTVGSGKSSCLSCILGGVPKESGIIRLCGTK------------ 423
L++++L + G VA+ G G+GKS+ L C+ G V SG + + GT
Sbjct: 17 LKDVSLSINPGEFVALIGPSGAGKSTLLRCLNGLVEPTSGSVLIDGTDINKLKGKALRQL 76
Query: 424 ----AYVAQSPWIQSGKIE-----ENILFGK---------------EMDRERYERVLEAC 459
+ Q + IE EN+L G+ + +++R A
Sbjct: 77 RRQIGMIFQQFNL----IERLSVLENVLSGRLGRRSTWRSLFGLFPKEEKQR------AL 126
Query: 460 SLKKDLEVLPFGDQTIIGERGINLSGGQKQRIQIARPLYQDADIFLLDDPFSPVDDHTGA 519
+ + + +L Q R LSGGQ+QR+ IAR L Q + L D+P + +D +
Sbjct: 127 AALERVGLLDKAYQ-----RADQLSGGQQQRVAIARALMQQPKLILADEPVASLDPASSR 181
Query: 520 ---HLFKFCWVSSSKTVIYATHQVEF-LPAADLILVIKDGKI 557
L K TVI + HQV+ AD I+ +KDG+I
Sbjct: 182 QVMDLLKRINREEGITVIVSLHQVDLAREYADRIVGLKDGRI 223
|
Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only prokaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 241 |
| >gnl|CDD|213213 cd03246, ABCC_Protease_Secretion, ATP-binding cassette domain of PrtD, subfamily C | Back alignment and domain information |
|---|
Score = 79.6 bits (197), Expect = 5e-17
Identities = 51/193 (26%), Positives = 81/193 (41%), Gaps = 41/193 (21%)
Query: 950 IRHLQVRYAPNLPLVLR---------------GRTGSGKSTLIQTLFRIVESTAGHILID 994
+ ++ RY P VLR G +GSGKSTL + + ++ T+G + +D
Sbjct: 3 VENVSFRYPGAEPPVLRNVSFSIEPGESLAIIGPSGSGKSTLARLILGLLRPTSGRVRLD 62
Query: 995 GKDISLIGLHDLRTRLSIIPQDPTMFEGTTRSNLDPLEEHADEQIWEALDKCQLGDEVRK 1054
G DIS ++L + +PQD +F G+ N I + +LG
Sbjct: 63 GADISQWDPNELGDHVGYLPQDDELFSGSIAEN-----------ILSGGQRQRLG----- 106
Query: 1055 KKGKLDSQGRVLLKKSKVLVLDEATASVDTATDNQIQQTLRQ-HFSDCTVVTIAHRITSV 1113
R L ++LVLDE + +D + + Q + + T + IAHR
Sbjct: 107 -------LARALYGNPRILVLDEPNSHLDVEGERALNQAIAALKAAGATRIVIAHRP-ET 158
Query: 1114 LDSA-MVLLLNHG 1125
L SA +L+L G
Sbjct: 159 LASADRILVLEDG 171
|
This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substrates ranges from inorganic ions, nutrients such as amino acids, sugars, or peptides, hydrophobic drugs, to large polypeptides, such as HlyA. Length = 173 |
| >gnl|CDD|224047 COG1122, CbiO, ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 80.4 bits (199), Expect = 1e-16
Identities = 58/230 (25%), Positives = 104/230 (45%), Gaps = 38/230 (16%)
Query: 948 VNIRHLQVRYAPNLP--------------LVLRGRTGSGKSTLIQTLFRIVESTAGHILI 993
+ +L RY ++L G GSGKSTL++ L +++ T+G +L+
Sbjct: 4 IEAENLSFRYPGRKAALKDVSLEIEKGERVLLIGPNGSGKSTLLKLLNGLLKPTSGEVLV 63
Query: 994 DGKDISLI-GLHDLRTRLSIIPQDPTM--FEGTTRSNLD--------PLEEHADEQIWEA 1042
DG D S L +LR ++ ++ Q+P F T + P EE +E++ EA
Sbjct: 64 DGLDTSSEKSLLELRQKVGLVFQNPDDQLFGPTVEDEVAFGLENLGLPREE-IEERVAEA 122
Query: 1043 LDKCQLGDEVRKKKGKLDSQG--------RVLLKKSKVLVLDEATASVDTATDNQIQQTL 1094
L+ L + + + L S G VL ++L+LDE TA +D ++ + L
Sbjct: 123 LELVGLEELLDRPPFNL-SGGQKQRVAIAGVLAMGPEILLLDEPTAGLDPKGRRELLELL 181
Query: 1095 R--QHFSDCTVVTIAHRITSVLDSA-MVLLLNHGLIKEYDSPTKLLENKS 1141
+ + T++ + H + VL+ A V++L+ G I P ++ +
Sbjct: 182 KKLKEEGGKTIIIVTHDLELVLEYADRVVVLDDGKILADGDPAEIFNDAE 231
|
Length = 235 |
| >gnl|CDD|215650 pfam00005, ABC_tran, ABC transporter | Back alignment and domain information |
|---|
Score = 77.0 bits (190), Expect = 1e-16
Identities = 43/119 (36%), Positives = 65/119 (54%), Gaps = 12/119 (10%)
Query: 974 STLIQTLFRIVESTAGHILIDGKDI-SLIGLHDLRTRLSIIPQDPT-MFEGTTRSNLDP- 1030
STL++ + +++ T+G IL+DG+D L LR R+ ++ QDP E T R NL
Sbjct: 1 STLLKLITGLLQPTSGTILLDGEDGTGLSSRKLLRKRIGVVFQDPQLFPELTVRENLFFG 60
Query: 1031 -LEEHADEQIWEALDKCQLGDEVRKKKGKLDSQG--------RVLLKKSKVLVLDEATA 1080
++ AD + EAL++ L D + ++ S G R LLKK K+L+LDE TA
Sbjct: 61 LRDKEADARAEEALERVGLPDFLDREPVGTLSGGQKQRVAIARALLKKPKLLLLDEPTA 119
|
ABC transporters for a large family of proteins responsible for translocation of a variety of compounds across biological membranes. ABC transporters are the largest family of proteins in many completely sequenced bacteria. ABC transporters are composed of two copies of this domain and two copies of a transmembrane domain pfam00664. These four domains may belong to a single polypeptide as in human CFTR, or belong in different polypeptide chains. Length = 119 |
| >gnl|CDD|213213 cd03246, ABCC_Protease_Secretion, ATP-binding cassette domain of PrtD, subfamily C | Back alignment and domain information |
|---|
Score = 78.0 bits (193), Expect = 2e-16
Identities = 59/202 (29%), Positives = 86/202 (42%), Gaps = 60/202 (29%)
Query: 373 NPTLRNINLKVFHGMRVAVCGTVGSGKSSCLSCILGGVPKESGIIRLCGTK--------- 423
P LRN++ + G +A+ G GSGKS+ ILG + SG +RL G
Sbjct: 15 PPVLRNVSFSIEPGESLAIIGPSGSGKSTLARLILGLLRPTSGRVRLDGADISQWDPNEL 74
Query: 424 ----AYVAQSPWIQSGKIEENILFGKEMDRERYERVLEACSLKKDLEVLPFGDQTIIGER 479
Y+ Q + SG I ENIL
Sbjct: 75 GDHVGYLPQDDELFSGSIAENIL------------------------------------- 97
Query: 480 GINLSGGQKQRIQIARPLYQDADIFLLDDPFSPVDDHTGAHLFKFCWVSSSK----TVIY 535
SGGQ+QR+ +AR LY + I +LD+P S +D L + +++ K T I
Sbjct: 98 ----SGGQRQRLGLARALYGNPRILVLDEPNSHLDVEGERALNQA--IAALKAAGATRIV 151
Query: 536 ATHQVEFLPAADLILVIKDGKI 557
H+ E L +AD ILV++DG++
Sbjct: 152 IAHRPETLASADRILVLEDGRV 173
|
This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substrates ranges from inorganic ions, nutrients such as amino acids, sugars, or peptides, hydrophobic drugs, to large polypeptides, such as HlyA. Length = 173 |
| >gnl|CDD|237648 PRK14250, PRK14250, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 79.9 bits (197), Expect = 2e-16
Identities = 63/222 (28%), Positives = 111/222 (50%), Gaps = 22/222 (9%)
Query: 944 SHGEVNIRHLQVRYAPNLPLVLRGRTGSGKSTLIQTLFRIVESTAGHILIDGKDISLIGL 1003
S G+ ++ + V++ + G +G+GKSTLI+ + R+++ T G ILIDG DI I +
Sbjct: 13 SFGKEILKDISVKFEGGAIYTIVGPSGAGKSTLIKLINRLIDPTEGSILIDGVDIKTIDV 72
Query: 1004 HDLRTRLSIIPQDPTMFEGTTRSNLD--PL---EEHADEQIWEALDKCQLGDEVRKKKGK 1058
DLR ++ ++ Q P +FEGT + N++ P+ E++ D + + L L E + K
Sbjct: 73 IDLRRKIGMVFQQPHLFEGTVKDNIEYGPMLKGEKNVDVEYY--LSIVGLNKEYATRDVK 130
Query: 1059 LDSQG--------RVLLKKSKVLVLDEATASVDTATDNQIQQTLR--QHFSDCTVVTIAH 1108
S G R L +VL+LDE T+++D + I++ + ++ + TV+ I H
Sbjct: 131 NLSGGEAQRVSIARTLANNPEVLLLDEPTSALDPTSTEIIEELIVKLKNKMNLTVIWITH 190
Query: 1109 RITS---VLDSAMVLLLNHGLIKEYDSPTKLLENKSSSFAQL 1147
+ + D LN G++ EY N + +L
Sbjct: 191 NMEQAKRIGD--YTAFLNKGILVEYAKTYDFFTNPQNEVTKL 230
|
Length = 241 |
| >gnl|CDD|226164 COG3638, COG3638, ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 80.0 bits (198), Expect = 2e-16
Identities = 62/231 (26%), Positives = 96/231 (41%), Gaps = 41/231 (17%)
Query: 369 FSSPNPTLRNINLKVFHGMRVAVCGTVGSGKSSCLSCILGGVPKESGIIRLCGTK----- 423
+ + L+++NL++ G VA+ G G+GKS+ L + G V SG I G +
Sbjct: 13 YPGGHQALKDVNLEINQGEMVAIIGPSGAGKSTLLRSLNGLVDPTSGEILFNGVQITKLK 72
Query: 424 -----------AYVAQSP-WIQSGKIEENILFGKE------------MDRERYERVLEAC 459
+ Q + + EN+L G+ +E + L+A
Sbjct: 73 GKELRKLRRDIGMIFQQFNLVPRLSVLENVLLGRLGYTSTWRSLFGLFSKEDKAQALDA- 131
Query: 460 SLKKDLEVLPFGDQTIIGERGINLSGGQKQRIQIARPLYQDADIFLLDDPFS---PVDDH 516
LE + D+ +R LSGGQ+QR+ IAR L Q I L D+P + P
Sbjct: 132 -----LERVGILDKA--YQRASTLSGGQQQRVAIARALVQQPKIILADEPVASLDPESAK 184
Query: 517 TGAHLFKFCWVSSSKTVIYATHQVEF-LPAADLILVIKDGKITQAGKYSDI 566
+ K TVI HQV+ AD I+ +K G+I G S++
Sbjct: 185 KVMDILKDINQEDGITVIVNLHQVDLAKKYADRIIGLKAGRIVFDGPASEL 235
|
Length = 258 |
| >gnl|CDD|213231 cd03264, ABC_drug_resistance_like, ABC-type multidrug transport system, ATPase component | Back alignment and domain information |
|---|
Score = 78.8 bits (195), Expect = 3e-16
Identities = 56/210 (26%), Positives = 91/210 (43%), Gaps = 31/210 (14%)
Query: 948 VNIRHLQVRYA------------PNLPLVLRGRTGSGKSTLIQTLFRIVESTAGHILIDG 995
+ + +L RY L G G+GK+TL++ L + ++G I IDG
Sbjct: 1 LQLENLTKRYGKKRALDGVSLTLGPGMYGLLGPNGAGKTTLMRILATLTPPSSGTIRIDG 60
Query: 996 KDISLIGLHDLRTRLSIIPQDPTMFEG-TTRSNLDPL-------EEHADEQIWEALDKCQ 1047
+D+ L LR R+ +PQ+ ++ T R LD + + ++ E L+
Sbjct: 61 QDV-LKQPQKLRRRIGYLPQEFGVYPNFTVREFLDYIAWLKGIPSKEVKARVDEVLELVN 119
Query: 1048 LGDEVRKKKGKLDSQG---RV-----LLKKSKVLVLDEATASVDTATDNQIQQTLRQHFS 1099
LGD +KK G L S G RV L+ +L++DE TA +D + + L +
Sbjct: 120 LGDRAKKKIGSL-SGGMRRRVGIAQALVGDPSILIVDEPTAGLDPEERIRFRNLLSELGE 178
Query: 1100 DCTVVTIAHRITSVLDSA-MVLLLNHGLIK 1128
D V+ H + V V +LN G +
Sbjct: 179 DRIVILSTHIVEDVESLCNQVAVLNKGKLV 208
|
The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 211 |
| >gnl|CDD|213255 cd03288, ABCC_SUR2, ATP-binding cassette domain 2 of the sulfonylurea receptor SUR | Back alignment and domain information |
|---|
Score = 79.2 bits (195), Expect = 4e-16
Identities = 63/239 (26%), Positives = 106/239 (44%), Gaps = 16/239 (6%)
Query: 358 IEIIDGSFSWDFSSPNPTLRNINLKVFHGMRVAVCGTVGSGKSSCLSCILGGVPKESGII 417
I+I D ++ ++ P L+++ + G +V +CG GSGKSS V G I
Sbjct: 20 IKIHDLCVRYE-NNLKPVLKHVKAYIKPGQKVGICGRTGSGKSSLSLAFFRMVDIFDGKI 78
Query: 418 RLCGTK-------------AYVAQSPWIQSGKIEENILFGKEMDRERYERVLEACSLKKD 464
+ G + + Q P + SG I N+ + +R LE LK
Sbjct: 79 VIDGIDISKLPLHTLRSRLSIILQDPILFSGSIRFNLDPECKCTDDRLWEALEIAQLKNM 138
Query: 465 LEVLPFGDQTIIGERGINLSGGQKQRIQIARPLYQDADIFLLDDPFSPVDDHTGAHLFKF 524
++ LP G ++ E G N S GQ+Q +AR + + I ++D+ + +D T L K
Sbjct: 139 VKSLPGGLDAVVTEGGENFSVGQRQLFCLARAFVRKSSILIMDEATASIDMATENILQKV 198
Query: 525 CWVS-SSKTVIYATHQVEFLPAADLILVIKDGKITQAGKYSDIL-NSGTDFMELVGAHK 581
+ + +TV+ H+V + ADL+LV+ G + + ++L F LV K
Sbjct: 199 VMTAFADRTVVTIAHRVSTILDADLVLVLSRGILVECDTPENLLAQEDGVFASLVRTDK 257
|
The SUR domain 2. The sulfonylurea receptor SUR is an ATP binding cassette (ABC) protein of the ABCC/MRP family. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity. Length = 257 |
| >gnl|CDD|213268 cd03301, ABC_MalK_N, The N-terminal ATPase domain of the maltose transporter, MalK | Back alignment and domain information |
|---|
Score = 78.1 bits (193), Expect = 4e-16
Identities = 66/214 (30%), Positives = 93/214 (43%), Gaps = 42/214 (19%)
Query: 375 TLRNINLKVFHGMRVAVCGTVGSGKSSCLSCILGGVPKESGIIRLCGTK----------- 423
L ++NL + G V + G G GK++ L I G SG I + G
Sbjct: 15 ALDDLNLDIADGEFVVLLGPSGCGKTTTLRMIAGLEEPTSGRIYIGGRDVTDLPPKDRDI 74
Query: 424 AYVAQS----PWIQSGKIEENILFG----KEMDRERYERVLEACSLKKDLEVLPFGDQTI 475
A V Q+ P + + +NI FG K E ERV E L + +L
Sbjct: 75 AMVFQNYALYPHM---TVYDNIAFGLKLRKVPKDEIDERVREVAELLQIEHLL------- 124
Query: 476 IGERGINLSGGQKQRIQIARPLYQDADIFLLDDPFSPVDDHTGAHL-------FKFCWVS 528
+ LSGGQ+QR+ + R + ++ +FL+D+P S +D A L K
Sbjct: 125 -DRKPKQLSGGQRQRVALGRAIVREPKVFLMDEPLSNLD----AKLRVQMRAELKRLQQR 179
Query: 529 SSKTVIYATH-QVEFLPAADLILVIKDGKITQAG 561
T IY TH QVE + AD I V+ DG+I Q G
Sbjct: 180 LGTTTIYVTHDQVEAMTMADRIAVMNDGQIQQIG 213
|
ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed. Length = 213 |
| >gnl|CDD|213228 cd03261, ABC_Org_Solvent_Resistant, ATP-binding cassette transport system involved in resistant to organic solvents | Back alignment and domain information |
|---|
Score = 78.7 bits (195), Expect = 5e-16
Identities = 63/241 (26%), Positives = 98/241 (40%), Gaps = 43/241 (17%)
Query: 358 IEIIDGSFSWDFSSPNPTLRNINLKVFHGMRVAVCGTVGSGKSSCLSCILGGVPKESGII 417
IE+ + S+ L+ ++L V G +A+ G GSGKS+ L I+G + +SG +
Sbjct: 1 IELRGLTKSFG---GRTVLKGVDLDVRRGEILAIIGPSGSGKSTLLRLIVGLLRPDSGEV 57
Query: 418 RLCGTKAYVAQSPWI-----------QSG------KIEENILF--------GKEMDRERY 452
+ G + QSG + EN+ F +E RE
Sbjct: 58 LIDGEDISGLSEAELYRLRRRMGMLFQSGALFDSLTVFENVAFPLREHTRLSEEEIREIV 117
Query: 453 ERVLEACSLKKDLEVLPFGDQTIIGERGINLSGGQKQRIQIARPLYQDADIFLLDDPFS- 511
LEA L+ ++ P LSGG K+R+ +AR L D ++ L D+P +
Sbjct: 118 LEKLEAVGLRGAEDLYP-----------AELSGGMKKRVALARALALDPELLLYDEPTAG 166
Query: 512 --PVDDHTGAHLFKFCWVSSSKTVIYATHQVEF-LPAADLILVIKDGKITQAGKYSDILN 568
P+ L + T I TH ++ AD I V+ DGKI G ++
Sbjct: 167 LDPIASGVIDDLIRSLKKELGLTSIMVTHDLDTAFAIADRIAVLYDGKIVAEGTPEELRA 226
Query: 569 S 569
S
Sbjct: 227 S 227
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 235 |
| >gnl|CDD|226905 COG4525, TauB, ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 78.3 bits (193), Expect = 9e-16
Identities = 58/214 (27%), Positives = 92/214 (42%), Gaps = 39/214 (18%)
Query: 372 PNPTLRNINLKVFHGMRVAVCGTVGSGKSSCLSCILGGVPKESGIIRLCG--------TK 423
P L +++L + G V V G G GK++ L+ I G V G I+L G +
Sbjct: 17 PRSALEDVSLTIASGELVVVLGPSGCGKTTLLNLIAGFVTPSRGSIQLNGRRIEGPGAER 76
Query: 424 AYVAQS----PWIQSGKIEENILFG-------KEMDRERYERVLEACSLKKDLEVLPFGD 472
V Q+ PW+ + +N+ FG K RE ++L L+
Sbjct: 77 GVVFQNEALLPWLN---VIDNVAFGLQLRGIEKAQRREIAHQMLALVGLEG------AEH 127
Query: 473 QTIIGERGINLSGGQKQRIQIARPLYQDADIFLLDDPFSPVDDHTGAHLFKF---CWVSS 529
+ I LSGG +QR+ IAR L + + LLD+PF +D T + + W +
Sbjct: 128 KYIW-----QLSGGMRQRVGIARALAVEPQLLLLDEPFGALDALTREQMQELLLDLWQET 182
Query: 530 SKTVIYATHQVE---FLPAADLILVIKDGKITQA 560
K V+ TH +E FL ++L G++ +
Sbjct: 183 GKQVLLITHDIEEALFLATRLVVLSPGPGRVVER 216
|
Length = 259 |
| >gnl|CDD|226643 COG4175, ProV, ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 80.5 bits (199), Expect = 9e-16
Identities = 73/273 (26%), Positives = 111/273 (40%), Gaps = 60/273 (21%)
Query: 376 LRNINLKVFHGMRVAVCGTVGSGKSSCLSCILGGVPKESGIIRLCG-------------- 421
+ + +L V G + G GSGKS+ + + + G I + G
Sbjct: 44 VNDASLDVEEGEIFVIMGLSGSGKSTLVRLLNRLIEPTRGEILVDGKDIAKLSAAELREL 103
Query: 422 ---TKAYVAQS----PWIQSGKIEENILFGKEM----DRERYERVLEACSLKKDLEVLPF 470
+ V QS P + EN+ FG E+ ER ER LEA L + + +
Sbjct: 104 RRKKISMVFQSFALLPHRT---VLENVAFGLEVQGVPKAEREERALEALEL---VGLEGY 157
Query: 471 GDQTIIGERGINLSGGQKQRIQIARPLYQDADIFLLDDPFSPVD--------DHTGAHLF 522
D+ E LSGG +QR+ +AR L D DI L+D+ FS +D D L
Sbjct: 158 ADK-YPNE----LSGGMQQRVGLARALANDPDILLMDEAFSALDPLIRTEMQD----ELL 208
Query: 523 KFCWVSSSKTVIYATHQV-EFLPAADLILVIKDGKITQAGKYSDILNS-GTDFMELVGAH 580
+ KT+++ TH + E L D I ++KDG+I Q G +IL + D++ +
Sbjct: 209 EL-QAKLKKTIVFITHDLDEALRIGDRIAIMKDGEIVQVGTPEEILLNPANDYVRDFVRN 267
Query: 581 KQALSGLDSIDRGPVSERKSINKENDGTSTTNE 613
+DR V K I + D
Sbjct: 268 ---------VDRSRVLTAKDIMRRPDLLIRKTP 291
|
Length = 386 |
| >gnl|CDD|226646 COG4178, COG4178, ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only] | Back alignment and domain information |
|---|
Score = 81.6 bits (202), Expect = 9e-16
Identities = 48/182 (26%), Positives = 85/182 (46%), Gaps = 27/182 (14%)
Query: 946 GEVNIRHLQVRYAPNLPLVLRGRTGSGKSTLIQTLFRIVESTAGHILIDGKDISLIGLHD 1005
G+ + L P L++ G +G+GK++L++ L + +G I + L
Sbjct: 405 GQTLLSELNFEVRPGERLLITGESGAGKTSLLRALAGLWPWGSGRISMPADSALLF---- 460
Query: 1006 LRTRLSIIPQDPTMFEGTTRSNL---DPLEEHADEQIWEALDKCQLGDEVRKKKGKLD-- 1060
+PQ P + +GT R L + + +D ++ L K LGD + +
Sbjct: 461 -------LPQRPYLPQGTLREALCYPNAAPDFSDAELVAVLHKVGLGDLAERLDEEDRWD 513
Query: 1061 ---SQG--------RVLLKKSKVLVLDEATASVDTATDNQIQQTLRQHFSDCTVVTIAHR 1109
S G R+LL K K + LDEAT+++D T++++ Q L++ D TV+++ HR
Sbjct: 514 RVLSGGEQQRLAFARLLLHKPKWVFLDEATSALDEETEDRLYQLLKEELPDATVISVGHR 573
Query: 1110 IT 1111
T
Sbjct: 574 PT 575
|
Length = 604 |
| >gnl|CDD|163508 TIGR03796, NHLM_micro_ABC1, NHLM bacteriocin system ABC transporter, peptidase/ATP-binding protein | Back alignment and domain information |
|---|
Score = 81.5 bits (202), Expect = 1e-15
Identities = 65/240 (27%), Positives = 113/240 (47%), Gaps = 28/240 (11%)
Query: 358 IEIIDGSFSWDFSSPNPTLRNINLKVFHGMRVAVCGTVGSGKSSCLSCILG--------- 408
+E+ + +F + P P + N +L + G RVA+ G GSGKS+ + G
Sbjct: 478 VELRNITFGYSPLEP-PLIENFSLTLQPGQRVALVGGSGSGKSTIAKLVAGLYQPWSGEI 536
Query: 409 ---GVPKESGIIR--LCGTKAYVAQSPWIQSGKIEENI-LFGKEMDRERYERVLEACSLK 462
G+P+E I R L + A V Q ++ G + +N+ L+ + R + ++
Sbjct: 537 LFDGIPREE-IPREVLANSVAMVDQDIFLFEGTVRDNLTLWDPTIPDADLVRACKDAAIH 595
Query: 463 KDLEVLPFGDQTIIGERGINLSGGQKQRIQIARPLYQDADIFLLDDPFSPVDDHTGAHLF 522
+ P G + E G NLSGGQ+QR++IAR L ++ I +LD+ S +D T +
Sbjct: 596 DVITSRPGGYDAELAEGGANLSGGQRQRLEIARALVRNPSILILDEATSALDPETEKIID 655
Query: 523 -----KFCWVSSSKTVIYATHQVEFLPAADLILVIKDGKITQAGKYSDILNSGTDFMELV 577
+ C T I H++ + D I+V++ GK+ Q G + ++ G + L+
Sbjct: 656 DNLRRRGC------TCIIVAHRLSTIRDCDEIIVLERGKVVQRGTHEELWAVGGAYARLI 709
|
This protein describes a multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHLM, Nitrile Hydratase Leader Microcin [Transport and binding proteins, Amino acids, peptides and amines, Cellular processes, Biosynthesis of natural products]. Length = 710 |
| >gnl|CDD|130344 TIGR01277, thiQ, thiamine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 76.8 bits (189), Expect = 1e-15
Identities = 59/207 (28%), Positives = 96/207 (46%), Gaps = 36/207 (17%)
Query: 380 NLKVFHGMRVAVCGTVGSGKSSCLSCILGGVPKESGIIRLCGTKAYVAQSPWIQ--SGKI 437
+L V G VA+ G G+GKS+ L+ I G + SG I++ +++ +P+ + S
Sbjct: 18 DLNVADGEIVAIMGPSGAGKSTLLNLIAGFIEPASGSIKVND-QSHTGLAPYQRPVSMLF 76
Query: 438 EENILF---------------GKEMDRERYERVLE-ACSLKKD--LEVLPFGDQTIIGER 479
+EN LF G +++ E+ E+V++ A + L+ LP +
Sbjct: 77 QENNLFAHLTVRQNIGLGLHPGLKLNAEQQEKVVDAAQQVGIADYLDRLP-------EQ- 128
Query: 480 GINLSGGQKQRIQIARPLYQDADIFLLDDPFSPVDDHTGAHLFKFCWVSSSK---TVIYA 536
LSGGQ+QR+ +AR L + I LLD+PFS +D + S+ T++
Sbjct: 129 ---LSGGQRQRVALARCLVRPNPILLLDEPFSALDPLLREEMLALVKQLCSERQRTLLMV 185
Query: 537 THQVEFLPA-ADLILVIKDGKITQAGK 562
TH + A A I V+ GKI
Sbjct: 186 THHLSDARAIASQIAVVSQGKIKVVSD 212
|
This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found [Transport and binding proteins, Other]. Length = 213 |
| >gnl|CDD|224044 COG1119, ModF, ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 77.7 bits (192), Expect = 1e-15
Identities = 50/214 (23%), Positives = 91/214 (42%), Gaps = 27/214 (12%)
Query: 374 PTLRNINLKVFHGMRVAVCGTVGSGKSSCLSCILGGVPKESGIIRLCGTK---------- 423
L +++ +V G A+ G G+GK++ LS + G P SG + L G +
Sbjct: 45 KILGDLSWQVNPGEHWAIVGPNGAGKTTLLSLLTGEHPPSSGDVTLLGRRFGKGETIFEL 104
Query: 424 ----AYVAQSPWIQ-----SGKIEENILFGKEMDRERYERVLEACSLKKDLEVLP-FGDQ 473
V S + + + +L G Y+ L A L +L G +
Sbjct: 105 RKRIGLV--SSELHERFRVRETVRDVVLSGFFASIGIYQEDLTAEDLAAAQWLLELLGAK 162
Query: 474 TIIGERGINLSGGQKQRIQIARPLYQDADIFLLDDPFSPVDDHTGAHLFKFC--WVSS-- 529
+ +LS G+++R+ IAR L +D ++ +LD+P +D L +S
Sbjct: 163 HLADRPFGSLSQGEQRRVLIARALVKDPELLILDEPAQGLDLIAREQLLNRLEELAASPG 222
Query: 530 SKTVIYATHQVEFLPA-ADLILVIKDGKITQAGK 562
+ +++ TH E +P L++K+G++ GK
Sbjct: 223 APALLFVTHHAEEIPPCFTHRLLLKEGEVVAQGK 256
|
Length = 257 |
| >gnl|CDD|216049 pfam00664, ABC_membrane, ABC transporter transmembrane region | Back alignment and domain information |
|---|
Score = 78.1 bits (193), Expect = 1e-15
Identities = 35/177 (19%), Positives = 72/177 (40%), Gaps = 9/177 (5%)
Query: 718 TQLFNKMHVCIFRAPMYFFDSTPSGRILNRVSENVKWADQSAADMDIPYDIGAFAFSMIQ 777
L + I PM FFD+ G + +R++ +V D +G F S+
Sbjct: 78 RALLRQ----ILGLPMSFFDTNSVGELTSRLTNDVSKIRDGLGDK-----LGLFFQSLAT 128
Query: 778 LLGIIVVMSLVAWQVLIVFVPVIATFIWYQQYYITSTRELSRLIGVCKAPVIQQFSETIS 837
++G +VM W++ +V + ++ I R+L+R A E++S
Sbjct: 129 VVGGFIVMFYYGWKLTLVLLAILPLLILLSAVLAKKLRKLNRKEQKAYAKAGSVAEESLS 188
Query: 838 GSTTIRSLDQELRFRDTNMKLIDEYSRPKFHIAGAMEWLRFCIDMLSSITFAFSLAF 894
G T+++ +E + K +++ + A ++S +++A +L F
Sbjct: 189 GIRTVKAFGREEYELERYDKALEDAEKAGIKKAITAGLSFGITQLISYLSYALALWF 245
|
This family represents a unit of six transmembrane helices. Many members of the ABC transporter family (pfam00005) have two such regions. Length = 274 |
| >gnl|CDD|213227 cd03260, ABC_PstB_phosphate_transporter, ATP-binding cassette domain of the phosphate transport system | Back alignment and domain information |
|---|
Score = 76.8 bits (190), Expect = 2e-15
Identities = 55/200 (27%), Positives = 96/200 (48%), Gaps = 35/200 (17%)
Query: 967 GRTGSGKSTLIQTLFRIVES-----TAGHILIDGKDISLIGLHD--LRTRLSIIPQDPTM 1019
G +G GKSTL++ L R+ + G +L+DGKDI + + LR R+ ++ Q P
Sbjct: 33 GPSGCGKSTLLRLLNRLNDLIPGAPDEGEVLLDGKDIYDLDVDVLELRRRVGMVFQKPNP 92
Query: 1020 FEGTTRSNLD--------PLEEHADEQIWEALDKCQLGDEVRKKKGKLDSQG-------- 1063
F G+ N+ L+E DE++ EAL K L DEV+ + L G
Sbjct: 93 FPGSIYDNVAYGLRLHGIKLKEELDERVEEALRKAALWDEVKDRLHALGLSGGQQQRLCL 152
Query: 1064 -RVLLKKSKVLVLDEATASVDTATDNQIQQTLRQHFSDCTVVTIAH------RITSVLDS 1116
R L + +VL+LDE T+++D + +I++ + + + T+V + H R+ +
Sbjct: 153 ARALANEPEVLLLDEPTSALDPISTAKIEELIAELKKEYTIVIVTHNMQQAARV-----A 207
Query: 1117 AMVLLLNHGLIKEYDSPTKL 1136
L +G + E+ ++
Sbjct: 208 DRTAFLLNGRLVEFGPTEQI 227
|
Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. PstA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD). Length = 227 |
| >gnl|CDD|213261 cd03294, ABC_Pro_Gly_Betaine, ATP-binding cassette domain of the osmoprotectant proline/glycine betaine uptake system | Back alignment and domain information |
|---|
Score = 77.7 bits (192), Expect = 2e-15
Identities = 64/237 (27%), Positives = 97/237 (40%), Gaps = 56/237 (23%)
Query: 370 SSPNPTLRNINLKVFHGMRVAVCGTVGSGKSSCLSCILGGVPKESGIIRLCGTK------ 423
+ + +++L V G + G GSGKS+ L CI + SG + + G
Sbjct: 34 TGQTVGVNDVSLDVREGEIFVIMGLSGSGKSTLLRCINRLIEPTSGKVLIDGQDIAAMSR 93
Query: 424 -----------AYVAQS----PWIQSGKIEENILFG-------KEMDRERYERVLEACSL 461
+ V QS P + EN+ FG + ER LE L
Sbjct: 94 KELRELRRKKISMVFQSFALLP---HRTVLENVAFGLEVQGVPRAEREERAAEALELVGL 150
Query: 462 KKDLEVLPFGDQTIIGERGINLSGGQKQRIQIARPLYQDADIFLLDDPFSPVD------- 514
+ P D+ LSGG +QR+ +AR L D DI L+D+ FS +D
Sbjct: 151 EGWEHKYP--DE---------LSGGMQQRVGLARALAVDPDILLMDEAFSALDPLIRREM 199
Query: 515 -DHTGAHLFKFCWVSSSKTVIYATHQV-EFLPAADLILVIKDGKITQAGKYSDILNS 569
D L + KT+++ TH + E L D I ++KDG++ Q G +IL +
Sbjct: 200 QD----ELLRL-QAELQKTIVFITHDLDEALRLGDRIAIMKDGRLVQVGTPEEILTN 251
|
This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 269 |
| >gnl|CDD|224043 COG1118, CysA, ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 78.9 bits (195), Expect = 2e-15
Identities = 62/235 (26%), Positives = 101/235 (42%), Gaps = 41/235 (17%)
Query: 374 PTLRNINLKVFHGMRVAVCGTVGSGKSSCLSCILGGVPKESGIIRLCGTKAYVAQSPWIQ 433
L +I+L + G VA+ G G+GKS+ L I G ++G IRL G + + ++
Sbjct: 16 GALDDISLDIKSGELVALLGPSGAGKSTLLRIIAGLETPDAGRIRLNGRVLFDVSNLAVR 75
Query: 434 SGKI---------------EENILFGKEM---------DRERYERVLEACSLKKDLEVLP 469
K+ +NI FG ++ R R E +L L+
Sbjct: 76 DRKVGFVFQHYALFPHMTVADNIAFGLKVRKERPSEAEIRARVEELLRLVQLE------G 129
Query: 470 FGDQTIIGERGINLSGGQKQRIQIARPLYQDADIFLLDDPFSPVDDHTGAHLFKF---CW 526
D+ LSGGQ+QR+ +AR L + + LLD+PF +D L ++
Sbjct: 130 LADRYPA-----QLSGGQRQRVALARALAVEPKVLLLDEPFGALDAKVRKELRRWLRKLH 184
Query: 527 VSSSKTVIYATH-QVEFLPAADLILVIKDGKITQAGKYSDIL-NSGTDF-MELVG 578
T ++ TH Q E L AD ++V+ G+I Q G ++ + + F +G
Sbjct: 185 DRLGVTTVFVTHDQEEALELADRVVVLNQGRIEQVGPPDEVYDHPASRFVARFLG 239
|
Length = 345 |
| >gnl|CDD|224052 COG1127, Ttg2A, ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Score = 77.2 bits (191), Expect = 2e-15
Identities = 58/224 (25%), Positives = 93/224 (41%), Gaps = 41/224 (18%)
Query: 376 LRNINLKVFHGMRVAVCGTVGSGKSSCLSCILGGVPKESGIIRLCGTK--------AYVA 427
L ++L V G +A+ G GSGKS+ L ILG + + G I + G Y
Sbjct: 24 LDGVDLDVPRGEILAILGGSGSGKSTLLRLILGLLRPDKGEILIDGEDIPQLSEEELYEI 83
Query: 428 QSPW---IQSG------KIEENILFG----KEMDRERYERV----LEACSLKKD-LEVLP 469
+ Q G + EN+ F ++ + LE L+ ++ P
Sbjct: 84 RKRMGVLFQQGALFSSLTVFENVAFPLREHTKLPESLIRELVLMKLELVGLRGAAADLYP 143
Query: 470 FGDQTIIGERGINLSGGQKQRIQIARPLYQDADIFLLDDPFSPVDDHTGA---HLFKFCW 526
E LSGG ++R+ +AR + D ++ LD+P S +D + L +
Sbjct: 144 -------SE----LSGGMRKRVALARAIALDPELLFLDEPTSGLDPISAGVIDELIRELN 192
Query: 527 VSSSKTVIYATHQV-EFLPAADLILVIKDGKITQAGKYSDILNS 569
+ TVI TH + L AD + V+ DGK+ G ++L S
Sbjct: 193 DALGLTVIMVTHDLDSLLTIADRVAVLADGKVIAEGTPEELLAS 236
|
Length = 263 |
| >gnl|CDD|226970 COG4619, COG4619, ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 75.7 bits (186), Expect = 3e-15
Identities = 51/209 (24%), Positives = 90/209 (43%), Gaps = 26/209 (12%)
Query: 368 DFSSPNPTLRNINLKVFHGMRVAVCGTVGSGKSSCLSCILGGVPKESGIIRLCGTK---- 423
+ L NI+L V G +A+ G G GKS+ L + + SG + G
Sbjct: 11 YLAGDAKILNNISLSVRAGEFIAITGPSGCGKSTLLKIVASLISPTSGTLLFEGEDVSTL 70
Query: 424 ---------AYVAQSPWIQSGKIEENILFGKEMDRERYERVLEACSLKKDLEVLPFGDQT 474
+Y AQ+P + +E+N++F ++ R +R A L + +
Sbjct: 71 KPEAYRQQVSYCAQTPALFGDTVEDNLIFPWQIRNRRPDRAA-ALDLLARFAL----PDS 125
Query: 475 IIGERGINLSGGQKQRIQIARPLYQDADIFLLDDPFSPVDDHTG----AHLFKFCWVSSS 530
I+ + LSGG+KQRI + R L I LLD+ S +D+ + + +V
Sbjct: 126 ILTKNITELSGGEKQRIALIRNLQFMPKILLLDEITSALDESNKRNIEEMIHR--YVREQ 183
Query: 531 K-TVIYATH-QVEFLPAADLILVIKDGKI 557
V++ TH + + + AD ++ ++ G
Sbjct: 184 NVAVLWITHDKDQAIRHADKVITLQPGHA 212
|
Length = 223 |
| >gnl|CDD|234357 TIGR03797, NHLM_micro_ABC2, NHLM bacteriocin system ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 79.2 bits (196), Expect = 7e-15
Identities = 56/240 (23%), Positives = 111/240 (46%), Gaps = 40/240 (16%)
Query: 945 HGEVNIRHLQVRYAPNLPLVLR---------------GRTGSGKSTLIQTLFRIVESTAG 989
G + + + RY P+ PL+L G +GSGKSTL++ L +G
Sbjct: 449 SGAIEVDRVTFRYRPDGPLILDDVSLQIEPGEFVAIVGPSGSGKSTLLRLLLGFETPESG 508
Query: 990 HILIDGKDISLIGLHDLRTRLSIIPQDPTMFEGTTRSNLDPLEEHADEQIWEALDKCQLG 1049
+ DG+D++ + + +R +L ++ Q+ + G+ N+ ++ WEA L
Sbjct: 509 SVFYDGQDLAGLDVQAVRRQLGVVLQNGRLMSGSIFENIAGGAPLTLDEAWEAARMAGLA 568
Query: 1050 DEVRKKKGKLD---SQG---------------RVLLKKSKVLVLDEATASVDTATDNQIQ 1091
+++R + S+G R L++K ++L+ DEAT +A DN+ Q
Sbjct: 569 EDIRAMPMGMHTVISEGGGTLSGGQRQRLLIARALVRKPRILLFDEAT----SALDNRTQ 624
Query: 1092 QTLRQHFS--DCTVVTIAHRITSVLDSAMVLLLNHGLIKEYDSPTKLLENKSSSFAQLVA 1149
+ + T + IAHR++++ ++ + +L+ G + + + +L+ + FAQL
Sbjct: 625 AIVSESLERLKVTRIVIAHRLSTIRNADRIYVLDAGRVVQQGTYDELMA-REGLFAQLAR 683
|
Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal leader sequence cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, members of protein families related to nitrile hydratase alpha subunit or to nif11 have undergone paralogous family expansions, with members possessing a putative bacteriocin cleavage region ending with a classic Gly-Gly motif. Those sets of putative bacteriocins, members of this protein family and its partners TIGR03794 and TIGR03796, and cyclodehydratase/docking scaffold fusion proteins of thiazole/oxazole biosynthesis frequently show correlated species distribution and co-clustering within many of those genomes [Transport and binding proteins, Amino acids, peptides and amines, Cellular processes, Biosynthesis of natural products]. Length = 686 |
| >gnl|CDD|213193 cd03226, ABC_cobalt_CbiO_domain2, Second domain of the ATP-binding cassette component of cobalt transport system | Back alignment and domain information |
|---|
Score = 74.2 bits (183), Expect = 8e-15
Identities = 66/220 (30%), Positives = 98/220 (44%), Gaps = 35/220 (15%)
Query: 359 EIIDGSFSWDFSSPNPTLRNINLKVFHGMRVAVCGTVGSGKSSCLSCILGGVPKES-GII 417
I + SFS + L +++L ++ G +A+ G G+GK++ L+ IL G+ KES G I
Sbjct: 1 RIENISFS--YKKGTEILDDLSLDLYAGEIIALTGKNGAGKTT-LAKILAGLIKESSGSI 57
Query: 418 RLCGTKA----------YVAQSPWIQ--SGKIEENILFGKEM---DRERYERVLEACSLK 462
L G YV Q Q + + E +L G + E+ E VL+ L
Sbjct: 58 LLNGKPIKAKERRKSIGYVMQDVDYQLFTDSVREELLLGLKELDAGNEQAETVLKDLDLY 117
Query: 463 KDLEVLPFGDQTIIGERGINLSGGQKQRIQIARPLYQDADIFLLDDPFSPVDDHTG---A 519
E P +LSGGQKQR+ IA L D+ + D+P S +D
Sbjct: 118 ALKERHPL-----------SLSGGQKQRLAIAAALLSGKDLLIFDEPTSGLDYKNMERVG 166
Query: 520 HLFKFCWVSSSKTVIYATHQVEFLP-AADLILVIKDGKIT 558
L + + K VI TH EFL D +L++ +G I
Sbjct: 167 ELIREL-AAQGKAVIVITHDYEFLAKVCDRVLLLANGAIV 205
|
Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems. Length = 205 |
| >gnl|CDD|213192 cd03225, ABC_cobalt_CbiO_domain1, First domain of the ATP-binding cassette component of cobalt transport system | Back alignment and domain information |
|---|
Score = 74.0 bits (183), Expect = 1e-14
Identities = 56/188 (29%), Positives = 96/188 (51%), Gaps = 32/188 (17%)
Query: 963 LVLRGRTGSGKSTLIQTLFRIVESTAGHILIDGKDISLIGLHDLRTRLSIIPQDP-TMFE 1021
+++ G GSGKSTL++ L ++ T+G +L+DGKD++ + L +LR ++ ++ Q+P F
Sbjct: 30 VLIVGPNGSGKSTLLRLLNGLLGPTSGEVLVDGKDLTKLSLKELRRKVGLVFQNPDDQFF 89
Query: 1022 GTT--------RSNLDPLEEHADEQIWEALDKCQLGDEVRKKKGKLD------SQG---R 1064
G T NL EE +E++ EAL+ L +G D S G R
Sbjct: 90 GPTVEEEVAFGLENLGLPEEEIEERVEEALELVGL-------EGLRDRSPFTLSGGQKQR 142
Query: 1065 V-----LLKKSKVLVLDEATASVDTATDNQIQQTLRQ-HFSDCTVVTIAHRITSVLDSA- 1117
V L +L+LDE TA +D A ++ + L++ T++ + H + +L+ A
Sbjct: 143 VAIAGVLAMDPDILLLDEPTAGLDPAGRRELLELLKKLKAEGKTIIIVTHDLDLLLELAD 202
Query: 1118 MVLLLNHG 1125
V++L G
Sbjct: 203 RVIVLEDG 210
|
Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems. Length = 211 |
| >gnl|CDD|224053 COG1129, MglA, ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Score = 77.9 bits (193), Expect = 1e-14
Identities = 57/219 (26%), Positives = 96/219 (43%), Gaps = 46/219 (21%)
Query: 371 SPNPTLRNINLKVFHGMRVAVCGTVGSGKSSCLSCILGGVPKESGIIRLCGTKAYVAQSP 430
L ++L V G A+ G G+GKS+ + + G P +SG I + G K SP
Sbjct: 19 GGVKALDGVSLTVRPGEVHALLGENGAGKSTLMKILSGVYPPDSGEILIDG-KPVAFSSP 77
Query: 431 W--IQSG--------------KIEENILFGKE-------MD----RERYERVLEACSLKK 463
+ +G + ENI G+E +D R R +L L
Sbjct: 78 RDALAAGIATVHQELSLVPNLSVAENIFLGREPTRRFGLIDRKAMRRRARELLARLGLDI 137
Query: 464 DLEVLPFGDQTIIGERGINLSGGQKQRIQIARPLYQDADIFLLDDPFSPVDDHTGAHLFK 523
D + T++G +LS Q+Q ++IAR L DA + +LD+P + + LF
Sbjct: 138 DPD-------TLVG----DLSIAQRQMVEIARALSFDARVLILDEPTAALTVKETERLFD 186
Query: 524 FCWV----SSSKTVIYATHQVEFLPA-ADLILVIKDGKI 557
+ + +IY +H+++ + AD I V++DG++
Sbjct: 187 L--IRRLKAQGVAIIYISHRLDEVFEIADRITVLRDGRV 223
|
Length = 500 |
| >gnl|CDD|130254 TIGR01186, proV, glycine betaine/L-proline transport ATP binding subunit | Back alignment and domain information |
|---|
Score = 76.4 bits (188), Expect = 1e-14
Identities = 59/229 (25%), Positives = 99/229 (43%), Gaps = 39/229 (17%)
Query: 376 LRNINLKVFHGMRVAVCGTVGSGKSSCLSCILGGVPKESGIIRLCGTK------------ 423
+ + +L + G + G GSGKS+ + + + +G I + G
Sbjct: 9 VNDADLAIAKGEIFVIMGLSGSGKSTTVRMLNRLIEPTAGQIFIDGENIMKQSPVELREV 68
Query: 424 -----AYVAQS-PWIQSGKIEENILFGKEM----DRERYERVLEACSLKKDLE--VLPFG 471
V Q I +N G E+ ++ER E+ LE L LE +
Sbjct: 69 RRKKIGMVFQQFALFPHMTILQNTSLGPELLGWPEQERKEKALELLKL-VGLEEYEHRYP 127
Query: 472 DQTIIGERGINLSGGQKQRIQIARPLYQDADIFLLDDPFSPVDDHTGAHL---FKFCWVS 528
D+ LSGG +QR+ +AR L + DI L+D+ FS +D + K +
Sbjct: 128 DE---------LSGGMQQRVGLARALAAEPDILLMDEAFSALDPLIRDSMQDELKKLQAT 178
Query: 529 SSKTVIYATHQV-EFLPAADLILVIKDGKITQAGKYSDIL-NSGTDFME 575
KT+++ TH + E + D I+++K G+I Q G +IL N +++E
Sbjct: 179 LQKTIVFITHDLDEAIRIGDRIVIMKAGEIVQVGTPDEILRNPANEYVE 227
|
This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lactis functionally complements an E.coli proU mutant. The comlementing locus is similar to a opuA locus in B.sutlis. This clarifies the differences in nomenclature [Transport and binding proteins, Amino acids, peptides and amines]. Length = 363 |
| >gnl|CDD|213263 cd03296, ABC_CysA_sulfate_importer, ATP-binding cassette domain of the sulfate transporter | Back alignment and domain information |
|---|
Score = 73.9 bits (182), Expect = 2e-14
Identities = 65/227 (28%), Positives = 103/227 (45%), Gaps = 24/227 (10%)
Query: 374 PTLRNINLKVFHGMRVAVCGTVGSGKSSCLSCILGGVPKESGIIRLCGTKA--------- 424
L +++L + G VA+ G GSGK++ L I G +SG I G A
Sbjct: 16 VALDDVSLDIPSGELVALLGPSGSGKTTLLRLIAGLERPDSGTILFGGEDATDVPVQERN 75
Query: 425 --YVAQS-PWIQSGKIEENILFGKEMDRERYERVLEACSLKKDLEVLPFGDQTIIGERGI 481
+V Q + + +N+ FG + + R ER EA K E+L + +R
Sbjct: 76 VGFVFQHYALFRHMTVFDNVAFGLRV-KPRSERPPEAEIRAKVHELLKLVQLDWLADRYP 134
Query: 482 N-LSGGQKQRIQIARPLYQDADIFLLDDPFSPVDDHTGAHLFKFCWVSS-----SKTVIY 535
LSGGQ+QR+ +AR L + + LLD+PF +D L + W+ T ++
Sbjct: 135 AQLSGGQRQRVALARALAVEPKVLLLDEPFGALDAKVRKELRR--WLRRLHDELHVTTVF 192
Query: 536 ATH-QVEFLPAADLILVIKDGKITQAGKYSDILNS-GTDF-MELVGA 579
TH Q E L AD ++V+ G+I Q G ++ + + F +G
Sbjct: 193 VTHDQEEALEVADRVVVMNKGRIEQVGTPDEVYDHPASPFVYSFLGE 239
|
Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 239 |
| >gnl|CDD|237457 PRK13647, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 74.0 bits (182), Expect = 3e-14
Identities = 60/240 (25%), Positives = 107/240 (44%), Gaps = 40/240 (16%)
Query: 355 DTAIEIIDGSFSWDFSSPNPTLRNINLKVFHGMRVAVCGTVGSGKSSCLSCILGGVPKES 414
D IE+ D F + L+ ++L + G + A+ G G+GKS+ L + G +
Sbjct: 2 DNIIEVEDLHFR--YKDGTKALKGLSLSIPEGSKTALLGPNGAGKSTLLLHLNGIYLPQR 59
Query: 415 GIIRLCGTKAYVAQSPWIQ---------------SGKIEENILFG--------KEMDRER 451
G +++ G + W++ S + +++ FG E++R R
Sbjct: 60 GRVKVMGREVNAENEKWVRSKVGLVFQDPDDQVFSSTVWDDVAFGPVNMGLDKDEVER-R 118
Query: 452 YERVLEACSLKKDLEVLPFGDQTIIGERGINLSGGQKQRIQIARPLYQDADIFLLDDPFS 511
E L+A + + P+ +LS GQK+R+ IA L D D+ +LD+P +
Sbjct: 119 VEEALKAVRMWDFRDKPPY-----------HLSYGQKKRVAIAGVLAMDPDVIVLDEPMA 167
Query: 512 PVDDHTGAHLFKFCWV--SSSKTVIYATHQVEF-LPAADLILVIKDGKITQAGKYSDILN 568
+D L + + KTVI ATH V+ AD ++V+K+G++ G S + +
Sbjct: 168 YLDPRGQETLMEILDRLHNQGKTVIVATHDVDLAAEWADQVIVLKEGRVLAEGDKSLLTD 227
|
Length = 274 |
| >gnl|CDD|213265 cd03298, ABC_ThiQ_thiamine_transporter, ATP-binding cassette domain of the thiamine transport system | Back alignment and domain information |
|---|
Score = 72.5 bits (178), Expect = 3e-14
Identities = 59/207 (28%), Positives = 85/207 (41%), Gaps = 40/207 (19%)
Query: 381 LKVFHGMRVAVCGTVGSGKSSCLSCILGGVPKESGIIRLCG---TKAYVAQSPWIQSGKI 437
L G A+ G GSGKS+ L+ I G +SG + + G T A A P S
Sbjct: 19 LTFAQGEITAIVGPSGSGKSTLLNLIAGFETPQSGRVLINGVDVTAAPPADRP--VSMLF 76
Query: 438 EENILFG------------------KEMDRERYERVLEACSLKKDLEVLPFGDQTIIGER 479
+EN LF DR+ E L L + LP GE
Sbjct: 77 QENNLFAHLTVEQNVGLGLSPGLKLTAEDRQAIEVALARVGLAGLEKRLP-------GE- 128
Query: 480 GINLSGGQKQRIQIARPLYQDADIFLLDDPFSPVD----DHTGAHLFKFCWVSSSKTVIY 535
LSGG++QR+ +AR L +D + LLD+PF+ +D + + TV+
Sbjct: 129 ---LSGGERQRVALARVLVRDKPVLLLDEPFAALDPALRAEMLDLVLDLH-AETKMTVLM 184
Query: 536 ATHQVE-FLPAADLILVIKDGKITQAG 561
THQ E A ++ + +G+I G
Sbjct: 185 VTHQPEDAKRLAQRVVFLDNGRIAAQG 211
|
Part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP. Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 211 |
| >gnl|CDD|213256 cd03289, ABCC_CFTR2, ATP-binding cassette domain 2 of CFTR,subfamily C | Back alignment and domain information |
|---|
Score = 73.7 bits (181), Expect = 4e-14
Identities = 79/268 (29%), Positives = 116/268 (43%), Gaps = 37/268 (13%)
Query: 373 NPTLRNINLKVFHGMRVAVCGTVGSGKSSCLSCILGGVPKESGIIRLCGT---------- 422
N L NI+ + G RV + G GSGKS+ LS L + E G I++ G
Sbjct: 17 NAVLENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLNTE-GDIQIDGVSWNSVPLQKW 75
Query: 423 -KAY--VAQSPWIQSGKIEENI-LFGKEMDRERYERVLEACSLKKDLEVLPFGDQTIIGE 478
KA+ + Q +I SG +N+ +GK D E + +V E LK +E P ++ +
Sbjct: 76 RKAFGVIPQKVFIFSGTFRKNLDPYGKWSDEEIW-KVAEEVGLKSVIEQFPGQLDFVLVD 134
Query: 479 RGINLSGGQKQRIQIARPLYQDADIFLLDDPFSPVD-------DHTGAHLFKFCWVSSSK 531
G LS G KQ + +AR + A I LLD+P + +D T F C
Sbjct: 135 GGCVLSHGHKQLMCLARSVLSKAKILLLDEPSAHLDPITYQVIRKTLKQAFADC------ 188
Query: 532 TVIYATHQVEFLPAADLILVIKDGKITQAGKYSDILNSGTDFMELVGAHKQALSGLDSID 591
TVI + H++E + LVI++ K+ Q +LN + F KQA+S D +
Sbjct: 189 TVILSEHRIEAMLECQRFLVIEENKVRQYDSIQKLLNEKSHF-------KQAISPSDRLK 241
Query: 592 RGPVSER-KSINKENDGTSTTNEIVNKE 618
P KS K E +E
Sbjct: 242 LFPRRNSSKSKRKPRPQIQALQEETEEE 269
|
The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2. Length = 275 |
| >gnl|CDD|224046 COG1121, ZnuC, ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 73.0 bits (180), Expect = 5e-14
Identities = 59/249 (23%), Positives = 104/249 (41%), Gaps = 48/249 (19%)
Query: 947 EVNIRHLQVRYAPNLPL------VLRGRT-------GSGKSTLIQTLFRIVESTAGHILI 993
+ + +L V Y L V +G G+GKSTL++ + +++ ++G I I
Sbjct: 4 MIEVENLTVSYGNRPVLEDISLSVEKGEITALIGPNGAGKSTLLKAILGLLKPSSGEIKI 63
Query: 994 DGKDISLIGLHDLRTRLSIIPQ----DPT----------MFEGTTRSNLDPLEEHADEQI 1039
GK + R R+ +PQ D + + + L + E++
Sbjct: 64 FGKPVRKR---RKRLRIGYVPQKSSVDRSFPITVKDVVLLGRYGKKGWFRRLNKKDKEKV 120
Query: 1040 WEALDKCQLGDEVRKKK-GKLDSQG--------RVLLKKSKVLVLDEATASVDTATDNQI 1090
EAL++ + D +R ++ G+L S G R L + +L+LDE VD A +I
Sbjct: 121 DEALERVGMED-LRDRQIGEL-SGGQKQRVLLARALAQNPDLLLLDEPFTGVDVAGQKEI 178
Query: 1091 QQTLRQHFSD-CTVVTIAHRITSVLDSA-MVLLLNHGLI-----KEYDSPTKLLENKSSS 1143
L++ + TV+ + H + V+ V+ LN LI +E + L + S
Sbjct: 179 YDLLKELRQEGKTVLMVTHDLGLVMAYFDRVICLNRHLIASGPPEEVLTEENLEKAFGGS 238
Query: 1144 FAQLVAEYT 1152
A +A Y
Sbjct: 239 LAHALAGYR 247
|
Length = 254 |
| >gnl|CDD|224048 COG1123, COG1123, ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only] | Back alignment and domain information |
|---|
Score = 75.7 bits (187), Expect = 6e-14
Identities = 70/293 (23%), Positives = 111/293 (37%), Gaps = 63/293 (21%)
Query: 904 HPYKNLERKIISVERILQCACIPSEPALVIEATKPNNSRPSHGEVNIRHLQVRYAPNLPL 963
HPY R ++ A +P I + +++R+L RY L
Sbjct: 248 HPYT---RGLL--------AAVPRLGDEKIIRLPRRGPLRAEPLLSVRNLSKRYGSRKGL 296
Query: 964 -----------------VLRGRT-------GSGKSTLIQTLFRIVESTAGHILIDGKDIS 999
+ G T GSGKSTL + L ++ ++G I+ DG+D+
Sbjct: 297 FVRERGEVKAVDDVSFDLREGETLGLVGESGSGKSTLARILAGLLPPSSGSIIFDGQDLD 356
Query: 1000 LIG--LHDLRTRLSIIPQDPTMF---EGTTRSNL-DPLEEH-------ADEQIWEALDKC 1046
L G L LR R+ ++ QDP T L +PL H ++ E L+
Sbjct: 357 LTGGELRRLRRRIQMVFQDPYSSLNPRMTVGDILAEPLRIHGGGSGAERRARVAELLELV 416
Query: 1047 QLGDEVRKKKGKLDSQG--------RVLLKKSKVLVLDEATASVDTATDNQIQQTLR--Q 1096
L E + S G R L + K+L+LDE +++D + Q+ L+ Q
Sbjct: 417 GLPPEFLDRYPHELSGGQRQRVAIARALALEPKLLILDEPVSALDVSVQAQVLNLLKDLQ 476
Query: 1097 HFSDCTVVTIAHRITSVL---DSAMVLLLNHGLIKEYDSPTKLLENKSSSFAQ 1146
T + I+H + V D V+ G I E K+ EN + +
Sbjct: 477 EELGLTYLFISHDLAVVRYIADRVAVMYD--GRIVEEGPTEKVFENPQHPYTR 527
|
Length = 539 |
| >gnl|CDD|213264 cd03297, ABC_ModC_molybdenum_transporter, ATP-binding cassette domain of the molybdenum transport system | Back alignment and domain information |
|---|
Score = 71.6 bits (176), Expect = 7e-14
Identities = 59/219 (26%), Positives = 86/219 (39%), Gaps = 47/219 (21%)
Query: 376 LRNINLKV---FHGMRVAVCGTVGSGKSSCLSCILGGVPKESGIIRLCGTKAYVAQSPWI 432
L + LK+ + + G G+GKS+ L CI G + G I L GT
Sbjct: 10 LPDFTLKIDFDLNEEVTGIFGASGAGKSTLLRCIAGLEKPDGGTIVLNGT-------VLF 62
Query: 433 QSGK-------------------------IEENILFGKEMDRERYERVLEACSLKKDLEV 467
S K + EN+ FG + R R +R+ E+
Sbjct: 63 DSRKKINLPPQQRKIGLVFQQYALFPHLNVRENLAFGLKRKRNREDRISVD-------EL 115
Query: 468 LPFGDQTIIGERGI-NLSGGQKQRIQIARPLYQDADIFLLDDPFSPVDDHTGAHLFKFCW 526
L + R LSGG+KQR+ +AR L ++ LLD+PFS +D L
Sbjct: 116 LDLLGLDHLLNRYPAQLSGGEKQRVALARALAAQPELLLLDEPFSALDRALRLQLLPELK 175
Query: 527 VSSSK---TVIYATHQ-VEFLPAADLILVIKDGKITQAG 561
VI+ TH E AD I+V++DG++ G
Sbjct: 176 QIKKNLNIPVIFVTHDLSEAEYLADRIVVMEDGRLQYIG 214
|
ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 214 |
| >gnl|CDD|131368 TIGR02315, ABC_phnC, phosphonate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 72.3 bits (178), Expect = 7e-14
Identities = 71/224 (31%), Positives = 95/224 (42%), Gaps = 41/224 (18%)
Query: 376 LRNINLKVFHGMRVAVCGTVGSGKSSCLSCILGGVPKESGIIRLCGTK------------ 423
L+NINL + G VA+ G G+GKS+ L CI V SG I L GT
Sbjct: 18 LKNINLNINPGEFVAIIGPSGAGKSTLLRCINRLVEPSSGSILLEGTDITKLRGKKLRKL 77
Query: 424 ----AYVAQS-PWIQSGKIEENILFGK------------EMDRERYERVLEACSLKKDLE 466
+ Q I+ + EN+L G+ E ER L A LE
Sbjct: 78 RRRIGMIFQHYNLIERLTVLENVLHGRLGYKPTWRSLLGRFSEEDKERALSA------LE 131
Query: 467 VLPFGDQTIIGERGINLSGGQKQRIQIARPLYQDADIFLLDDPFSPVDDHTGA---HLFK 523
+ D+ R LSGGQ+QR+ IAR L Q D+ L D+P + +D T K
Sbjct: 132 RVGLADKAYQ--RADQLSGGQQQRVAIARALAQQPDLILADEPIASLDPKTSKQVMDYLK 189
Query: 524 FCWVSSSKTVIYATHQVEFLPA-ADLILVIKDGKITQAGKYSDI 566
TVI HQV+ AD I+ +K G+I G S++
Sbjct: 190 RINKEDGITVIINLHQVDLAKKYADRIVGLKAGEIVFDGAPSEL 233
|
Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates [Transport and binding proteins, Anions]. Length = 243 |
| >gnl|CDD|213224 cd03257, ABC_NikE_OppD_transporters, ATP-binding cassette domain of nickel/oligopeptides specific transporters | Back alignment and domain information |
|---|
Score = 71.8 bits (177), Expect = 8e-14
Identities = 52/215 (24%), Positives = 85/215 (39%), Gaps = 34/215 (15%)
Query: 371 SPNPTLRNINLKVFHGMRVAVCGTVGSGKSSCLSCILGGVPKESGIIRLCGTK------- 423
L +++ + G + + G GSGKS+ ILG + SG I G
Sbjct: 16 GSVKALDDVSFSIKKGETLGLVGESGSGKSTLARAILGLLKPTSGSIIFDGKDLLKLSRR 75
Query: 424 ---------AYVAQ------SPWIQSGK-IEENILF-GKEMDRERYERVLEACSLKKDLE 466
V Q +P + G+ I E + GK +E + + L
Sbjct: 76 LRKIRRKEIQMVFQDPMSSLNPRMTIGEQIAEPLRIHGKLSKKEARKEAVLL-----LLV 130
Query: 467 VLPFGDQTIIGERGINLSGGQKQRIQIARPLYQDADIFLLDDPFSPVDDHTGA---HLFK 523
+ + ++ LSGGQ+QR+ IAR L + + + D+P S +D A L K
Sbjct: 131 GVG-LPEEVLNRYPHELSGGQRQRVAIARALALNPKLLIADEPTSALDVSVQAQILDLLK 189
Query: 524 FCWVSSSKTVIYATHQVEFLPA-ADLILVIKDGKI 557
T+++ TH + + AD + V+ GKI
Sbjct: 190 KLQEELGLTLLFITHDLGVVAKIADRVAVMYAGKI 224
|
The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF. Length = 228 |
| >gnl|CDD|226927 COG4555, NatA, ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 71.7 bits (176), Expect = 1e-13
Identities = 50/225 (22%), Positives = 95/225 (42%), Gaps = 32/225 (14%)
Query: 358 IEIIDGSFSWDFSSPNPTLRNINLKVFHGMRVAVCGTVGSGKSSCLSCILGGVPKESGII 417
+E+ D + S + S +R+++ + G + G G+GK++ L I + +SG +
Sbjct: 2 LEVTDLTKS--YGSKVQAVRDVSFEAEEGEITGLLGENGAGKTTLLRMIATLLIPDSGKV 59
Query: 418 RLCGTKAYVAQSPWIQSGKI---------------EENILFGKE---MDRERYERVLEAC 459
+ G + P KI EN+ + + R+ + +
Sbjct: 60 TIDGVDT--VRDPSFVRRKIGVLFGERGLYARLTARENLKYFARLNGLSRKEIKARIA-- 115
Query: 460 SLKKDLEVLPFGDQTIIGERGINLSGGQKQRIQIARPLYQDADIFLLDDPFSPVDDHTGA 519
L K L++ + R S G KQ++ IAR L D I +LD+P S +D T
Sbjct: 116 ELSKRLQL-----LEYLDRRVGEFSTGMKQKVAIARALVHDPSILVLDEPTSGLDIRTRR 170
Query: 520 HLFKFCWV--SSSKTVIYATHQVEFLPA-ADLILVIKDGKITQAG 561
F + + VI+++H ++ + A D ++V+ G++ G
Sbjct: 171 KFHDFIKQLKNEGRAVIFSSHIMQEVEALCDRVIVLHKGEVVLEG 215
|
Length = 245 |
| >gnl|CDD|182778 PRK10851, PRK10851, sulfate/thiosulfate transporter subunit; Provisional | Back alignment and domain information |
|---|
Score = 73.2 bits (180), Expect = 1e-13
Identities = 67/215 (31%), Positives = 95/215 (44%), Gaps = 32/215 (14%)
Query: 376 LRNINLKVFHGMRVAVCGTVGSGKSSCLSCILGGVPKESGIIRLCGTK-----------A 424
L +I+L + G VA+ G GSGK++ L I G + SG IR GT
Sbjct: 18 LNDISLDIPSGQMVALLGPSGSGKTTLLRIIAGLEHQTSGHIRFHGTDVSRLHARDRKVG 77
Query: 425 YVAQS-PWIQSGKIEENILFGKEMDRERYERVLEACSLKKDLEVLPFGDQTIIGER-GIN 482
+V Q + + +NI FG + R ER A K ++L + +R
Sbjct: 78 FVFQHYALFRHMTVFDNIAFGLTV-LPRRERPNAAAIKAKVTQLLEMVQLAHLADRYPAQ 136
Query: 483 LSGGQKQRIQIARPLYQDADIFLLDDPFSPVDDHTGAHL----------FKFCWVSSSKT 532
LSGGQKQR+ +AR L + I LLD+PF +D L KF T
Sbjct: 137 LSGGQKQRVALARALAVEPQILLLDEPFGALDAQVRKELRRWLRQLHEELKF-------T 189
Query: 533 VIYATH-QVEFLPAADLILVIKDGKITQAGKYSDI 566
++ TH Q E + AD ++V+ G I QAG +
Sbjct: 190 SVFVTHDQEEAMEVADRVVVMSQGNIEQAGTPDQV 224
|
Length = 353 |
| >gnl|CDD|224045 COG1120, FepC, ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism] | Back alignment and domain information |
|---|
Score = 71.4 bits (176), Expect = 2e-13
Identities = 48/161 (29%), Positives = 78/161 (48%), Gaps = 23/161 (14%)
Query: 970 GSGKSTLIQTLFRIVESTAGHILIDGKDISLIGLHDLRTRLSIIPQDPTMFEGTT----- 1024
GSGKSTL++ L +++ +G +L+DGKDI+ + +L +L+ +PQ P+ G T
Sbjct: 38 GSGKSTLLKCLAGLLKPKSGEVLLDGKDIASLSPKELAKKLAYVPQSPSAPFGLTVYELV 97
Query: 1025 ------RSNLDPLEEHADEQI-WEALDKCQLGDEVRKKKGKLDSQG--------RVLLKK 1069
L DE+I EAL+ L + +L S G R L ++
Sbjct: 98 LLGRYPHLGLFGRPSKEDEEIVEEALELLGLEHLADRPVDEL-SGGERQRVLIARALAQE 156
Query: 1070 SKVLVLDEATASVDTATDNQIQQTLRQ--HFSDCTVVTIAH 1108
+ +L+LDE T+ +D A ++ + LR TVV + H
Sbjct: 157 TPILLLDEPTSHLDIAHQIEVLELLRDLNREKGLTVVMVLH 197
|
Length = 258 |
| >gnl|CDD|226628 COG4148, ModC, ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 73.1 bits (180), Expect = 2e-13
Identities = 48/206 (23%), Positives = 90/206 (43%), Gaps = 40/206 (19%)
Query: 390 AVCGTVGSGKSSCLSCILGGVPKESGIIRLCG------TK-----------AYVAQS--- 429
A+ G GSGK+S ++ I G + G I L G K YV Q
Sbjct: 28 ALFGPSGSGKTSLINMIAGLTRPDEGRIELNGRVLVDAEKGIFLPPEKRRIGYVFQDARL 87
Query: 430 -PWIQSGKIEENILFG-KEMDRERYERVLEACSLKKDLEVLPFGDQTIIGERGINLSGGQ 487
P + N+ +G + R ++++++ ++ L+ P LSGG+
Sbjct: 88 FPHY---TVRGNLRYGMWKSMRAQFDQLVALLGIEHLLDRYPG-----------TLSGGE 133
Query: 488 KQRIQIARPLYQDADIFLLDDPFSPVDDHTGAHLFKFCWVSSSKT---VIYATHQV-EFL 543
KQR+ I R L ++ L+D+P + +D + + + ++Y +H + E L
Sbjct: 134 KQRVAIGRALLTAPELLLMDEPLASLDLPRKREILPYLERLRDEINIPILYVSHSLDEVL 193
Query: 544 PAADLILVIKDGKITQAGKYSDILNS 569
AD ++V+++GK+ +G ++ S
Sbjct: 194 RLADRVVVLENGKVKASGPLEEVWGS 219
|
Length = 352 |
| >gnl|CDD|172735 PRK14247, PRK14247, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 71.1 bits (174), Expect = 2e-13
Identities = 55/196 (28%), Positives = 96/196 (48%), Gaps = 27/196 (13%)
Query: 940 NSRPSHGEVNI-RHLQVRYAPNLPLVLRGRTGSGKSTLIQTLFRIVE-----STAGHILI 993
+ + S G+V + + + N L G +GSGKSTL++ R++E +G + +
Sbjct: 8 DLKVSFGQVEVLDGVNLEIPDNTITALMGPSGSGKSTLLRVFNRLIELYPEARVSGEVYL 67
Query: 994 DGKDISLIGLHDLRTRLSIIPQDP------TMFE----GTTRSNLDPLEEHADEQIWEAL 1043
DG+DI + + +LR R+ ++ Q P ++FE G + L ++ E++ AL
Sbjct: 68 DGQDIFKMDVIELRRRVQMVFQIPNPIPNLSIFENVALGLKLNRLVKSKKELQERVRWAL 127
Query: 1044 DKCQLGDEVRKK----KGKLDS-------QGRVLLKKSKVLVLDEATASVDTATDNQIQQ 1092
+K QL DEV+ + GKL R L + +VL+ DE TA++D +I+
Sbjct: 128 EKAQLWDEVKDRLDAPAGKLSGGQQQRLCIARALAFQPEVLLADEPTANLDPENTAKIES 187
Query: 1093 TLRQHFSDCTVVTIAH 1108
+ D T+V + H
Sbjct: 188 LFLELKKDMTIVLVTH 203
|
Length = 250 |
| >gnl|CDD|182893 PRK11000, PRK11000, maltose/maltodextrin transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 73.1 bits (180), Expect = 2e-13
Identities = 68/224 (30%), Positives = 96/224 (42%), Gaps = 64/224 (28%)
Query: 377 RNINLKVFHGMRVAVCGTVGSGKSSCLSCILG------G------------VPKESGIIR 418
++INL + G V G G GKS+ L I G G P E G+
Sbjct: 20 KDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLEDITSGDLFIGEKRMNDVPPAERGV-- 77
Query: 419 LCGTKAYVAQS----PWIQSGKIEENILFG--------KEMDRERYERVLEACSLKKDLE 466
V QS P + + EN+ FG +E+++ R +V E L L+
Sbjct: 78 -----GMVFQSYALYPHLS---VAENMSFGLKLAGAKKEEINQ-RVNQVAEVLQLAHLLD 128
Query: 467 VLPFGDQTIIGERGINLSGGQKQRIQIARPLYQDADIFLLDDPFSPVDDHTGAHLFKFCW 526
P LSGGQ+QR+ I R L + +FLLD+P S +D A L
Sbjct: 129 RKP-----------KALSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLD----AALRVQMR 173
Query: 527 VSSSK-------TVIYATH-QVEFLPAADLILVIKDGKITQAGK 562
+ S+ T+IY TH QVE + AD I+V+ G++ Q GK
Sbjct: 174 IEISRLHKRLGRTMIYVTHDQVEAMTLADKIVVLDAGRVAQVGK 217
|
Length = 369 |
| >gnl|CDD|188353 TIGR03608, L_ocin_972_ABC, putative bacteriocin export ABC transporter, lactococcin 972 group | Back alignment and domain information |
|---|
Score = 70.0 bits (172), Expect = 2e-13
Identities = 56/206 (27%), Positives = 90/206 (43%), Gaps = 42/206 (20%)
Query: 376 LRNINLKVFHGMRVAVCGTVGSGKSSCLSCILGGVPK-ESGIIRLCGTK----------- 423
L ++NL + G A+ G GSGKS+ L+ I+G + K +SG + L G +
Sbjct: 14 LDDLNLTIEKGKMYAIIGESGSGKSTLLN-IIGLLEKFDSGQVYLNGQETPPLNSKKASK 72
Query: 424 ------AYVAQS-PWIQSGKIEENILFG--------KEMDRERYERVLEACSLKKDLEVL 468
Y+ Q+ I++ +EEN+ G KE RE+ + LE L L+
Sbjct: 73 FRREKLGYLFQNFALIENETVEENLDLGLKYKKLSKKEK-REKKKEALEKVGLNLKLK-- 129
Query: 469 PFGDQTIIGERGINLSGGQKQRIQIARPLYQDADIFLLDDPFSPVDDHTGAHLFKFC--W 526
I E LSGG++QR+ +AR + + + L D+P +D +
Sbjct: 130 -----QKIYE----LSGGEQQRVALARAILKPPPLILADEPTGSLDPKNRDEVLDLLLEL 180
Query: 527 VSSSKTVIYATHQVEFLPAADLILVI 552
KT+I TH E AD ++ +
Sbjct: 181 NDEGKTIIIVTHDPEVAKQADRVIEL 206
|
A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins [Cellular processes, Toxin production and resistance, Transport and binding proteins, Unknown substrate]. Length = 206 |
| >gnl|CDD|213183 cd03216, ABC_Carb_Monos_I, First domain of the ATP-binding cassette component of monosaccharide transport system | Back alignment and domain information |
|---|
Score = 68.6 bits (169), Expect = 2e-13
Identities = 45/192 (23%), Positives = 78/192 (40%), Gaps = 55/192 (28%)
Query: 376 LRNINLKVFHGMRVAVCGTVGSGKSSCLSCILGGVPKESGIIRLCGTKAYVAQSPWIQSG 435
L ++L V G A+ G G+GKS+ + + G +SG I + G + A SP
Sbjct: 16 LDGVSLSVRRGEVHALLGENGAGKSTLMKILSGLYKPDSGEILVDGKEVSFA-SPR---- 70
Query: 436 KIEENILFGKEMDRERYERVLEACSLKKDLEVLPFGDQTIIGERGIN----LSGGQKQRI 491
+A GI LS G++Q +
Sbjct: 71 ---------------------DA------------------RRAGIAMVYQLSVGERQMV 91
Query: 492 QIARPLYQDADIFLLDDPFSPVDDHTGAHLFKFCWV----SSSKTVIYATHQV-EFLPAA 546
+IAR L ++A + +LD+P + + LFK + + VI+ +H++ E A
Sbjct: 92 EIARALARNARLLILDEPTAALTPAEVERLFKV--IRRLRAQGVAVIFISHRLDEVFEIA 149
Query: 547 DLILVIKDGKIT 558
D + V++DG++
Sbjct: 150 DRVTVLRDGRVV 161
|
This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter. Length = 163 |
| >gnl|CDD|213202 cd03235, ABC_Metallic_Cations, ATP-binding cassette domain of the metal-type transporters | Back alignment and domain information |
|---|
Score = 69.9 bits (172), Expect = 3e-13
Identities = 49/182 (26%), Positives = 83/182 (45%), Gaps = 30/182 (16%)
Query: 970 GSGKSTLIQTLFRIVESTAGHILIDGKDISLIGLHDLRTRLSIIPQ----DPTM----FE 1021
G+GKSTL++ + +++ T+G I + GK + R R+ +PQ D +
Sbjct: 35 GAGKSTLLKAILGLLKPTSGSIRVFGKPLE-----KERKRIGYVPQRRSIDRDFPISVRD 89
Query: 1022 -----GTTRSNLDPLEEHADEQ-IWEALDKCQLGDEVRKKKGKLDSQG--------RVLL 1067
L AD+ + EAL++ L + ++ G+L S G R L+
Sbjct: 90 VVLMGLYGHKGLFRRLSKADKAKVDEALERVGLSELADRQIGEL-SGGQQQRVLLARALV 148
Query: 1068 KKSKVLVLDEATASVDTATDNQIQQTLRQ-HFSDCTVVTIAHRITSVLDSA-MVLLLNHG 1125
+ +L+LDE A VD T I + LR+ T++ + H + VL+ VLLLN
Sbjct: 149 QDPDLLLLDEPFAGVDPKTQEDIYELLRELRREGMTILVVTHDLGLVLEYFDRVLLLNRT 208
Query: 1126 LI 1127
++
Sbjct: 209 VV 210
|
This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates. Length = 213 |
| >gnl|CDD|162242 TIGR01187, potA, spermidine/putrescine ABC transporter ATP-binding subunit | Back alignment and domain information |
|---|
Score = 72.1 bits (177), Expect = 3e-13
Identities = 60/191 (31%), Positives = 84/191 (43%), Gaps = 32/191 (16%)
Query: 393 GTVGSGKSSCLSCILGGVPKESGIIRLCGTKAYVAQSP--------WIQS------GKIE 438
G G GK++ L + G +SG I L G V P QS +E
Sbjct: 3 GPSGCGKTTLLRLLAGFEQPDSGSIMLDGED--VTNVPPHLRHINMVFQSYALFPHMTVE 60
Query: 439 ENILFGKEMDR----ERYERVLEACSLKKDLEVLPFGDQTIIGERGINLSGGQKQRIQIA 494
EN+ FG +M + E RVLEA L +++ F D+ LSGGQ+QR+ +A
Sbjct: 61 ENVAFGLKMRKVPRAEIKPRVLEALRL---VQLEEFADRKPH-----QLSGGQQQRVALA 112
Query: 495 RPLYQDADIFLLDDPFSPVDDHTG---AHLFKFCWVSSSKTVIYATH-QVEFLPAADLIL 550
R L I LLD+P S +D K T ++ TH Q E + +D I
Sbjct: 113 RALVFKPKILLLDEPLSALDKKLRDQMQLELKTIQEQLGITFVFVTHDQEEAMTMSDRIA 172
Query: 551 VIKDGKITQAG 561
+++ GKI Q G
Sbjct: 173 IMRKGKIAQIG 183
|
This model describes spermidine/putrescine ABC transporter, ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Polyamines like spermidine and putrescine play vital role in cell proliferation, differentiation, and ion homeostasis. The concentration of polyamines within the cell are regulated by biosynthesis, degradation and transport (uptake and efflux included) [Transport and binding proteins, Amino acids, peptides and amines]. Length = 325 |
| >gnl|CDD|224060 COG1137, YhbG, ABC-type (unclassified) transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 70.7 bits (174), Expect = 3e-13
Identities = 58/226 (25%), Positives = 97/226 (42%), Gaps = 44/226 (19%)
Query: 374 PTLRNINLKVFHGMRVAVCGTVGSGKSSCLSCILGGVPKESGIIRLCGTK---------- 423
+ +++L+V G V + G G+GK++ I+G V +SG I L
Sbjct: 18 KVVNDVSLEVNSGEIVGLLGPNGAGKTTTFYMIVGLVRPDSGKILLDDEDITKLPMHKRA 77
Query: 424 ----AYVAQSPWIQSG-KIEENILFGKEM---DRERYERVLEACSLKKDLEVLPFGDQTI 475
Y+ Q I +E+NI+ E+ D ++ ER E +L ++ + D
Sbjct: 78 RLGIGYLPQEASIFRKLTVEDNIMAVLEIREKDLKKAERKEELDALLEEFHITHLRDS-- 135
Query: 476 IGERGINLSGGQKQRIQIARPLYQDADIFLLDDPFSPVDDHTGAHLFKFCWVSSSKTVI- 534
+ +LSGG+++R++IAR L + LLD+PF+ VD V + +I
Sbjct: 136 ---KAYSLSGGERRRVEIARALAANPKFILLDEPFAGVDP---------IAVIDIQRIIK 183
Query: 535 ----------YATHQV-EFLPAADLILVIKDGKITQAGKYSDILNS 569
H V E L D +I DGK+ G +I+N+
Sbjct: 184 HLKDRGIGVLITDHNVRETLDICDRAYIISDGKVLAEGSPEEIVNN 229
|
Length = 243 |
| >gnl|CDD|184209 PRK13650, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 70.9 bits (174), Expect = 3e-13
Identities = 67/243 (27%), Positives = 107/243 (44%), Gaps = 34/243 (13%)
Query: 358 IEIIDGSFSWDFSSPNPTLRNINLKVFHGMRVAVCGTVGSGKSSCLSCILGGVPKESGII 417
IE+ + +F + TL +++ V G +++ G GSGKS+ + I G + ESG I
Sbjct: 5 IEVKNLTFKYKEDQEKYTLNDVSFHVKQGEWLSIIGHNGSGKSTTVRLIDGLLEAESGQI 64
Query: 418 RLCGTK-------------AYVAQSPWIQ--SGKIEENILFGKEMD----RERYERVLEA 458
+ G V Q+P Q +E+++ FG E E ERV EA
Sbjct: 65 IIDGDLLTEENVWDIRHKIGMVFQNPDNQFVGATVEDDVAFGLENKGIPHEEMKERVNEA 124
Query: 459 CSLKKDLEVLPFGDQTIIGERGINLSGGQKQRIQIARPLYQDADIFLLDDPFSPVDDHTG 518
L G Q LSGGQKQR+ IA + I +LD+ S +D
Sbjct: 125 LEL--------VGMQDFKEREPARLSGGQKQRVAIAGAVAMRPKIIILDEATSMLDPEGR 176
Query: 519 AHLFKFCWVSSSK-----TVIYATHQVEFLPAADLILVIKDGKITQAGKYSDILNSGTDF 573
L K + + TVI TH ++ + +D +LV+K+G++ ++ + G D
Sbjct: 177 LELIKT--IKGIRDDYQMTVISITHDLDEVALSDRVLVMKNGQVESTSTPRELFSRGNDL 234
Query: 574 MEL 576
++L
Sbjct: 235 LQL 237
|
Length = 279 |
| >gnl|CDD|213269 cd03369, ABCC_NFT1, ATP-binding cassette domain 2 of NFT1, subfamily C | Back alignment and domain information |
|---|
Score = 69.4 bits (170), Expect = 4e-13
Identities = 54/222 (24%), Positives = 97/222 (43%), Gaps = 35/222 (15%)
Query: 355 DTAIEIIDGSFSWDFSSPNPTLRNINLKVFHGMRVAVCGTVGSGKSSCLSCILGGVPKES 414
IE+ + S + P P L+N++ KV G ++ + G G+GKS+ + + + E
Sbjct: 4 HGEIEVENLSVRYAPDLP-PVLKNVSFKVKAGEKIGIVGRTGAGKSTLILALFRFLEAEE 62
Query: 415 GIIRLCGTK-------------AYVAQSPWIQSGKIEENI-LFGKEMDRERYERVLEACS 460
G I + G + Q P + SG I N+ F + D E Y +
Sbjct: 63 GKIEIDGIDISTIPLEDLRSSLTIIPQDPTLFSGTIRSNLDPFDEYSDEEIYG------A 116
Query: 461 LKKDLEVLPFGDQTIIGERGINLSGGQKQRIQIARPLYQDADIFLLDDPFSPVDDHTGAH 520
L+ + E G+NLS GQ+Q + +AR L + + +LD+ + +D T A
Sbjct: 117 LR-------------VSEGGLNLSQGQRQLLCLARALLKRPRVLVLDEATASIDYATDAL 163
Query: 521 LFKFCWVSSSK-TVIYATHQVEFLPAADLILVIKDGKITQAG 561
+ K + T++ H++ + D ILV+ G++ +
Sbjct: 164 IQKTIREEFTNSTILTIAHRLRTIIDYDKILVMDAGEVKEYD 205
|
Domain 2 of NFT1 (New full-length MRP-type transporter 1). NFT1 belongs to the MRP (multidrug resistance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate. Length = 207 |
| >gnl|CDD|226364 COG3845, COG3845, ABC-type uncharacterized transport systems, ATPase components [General function prediction only] | Back alignment and domain information |
|---|
Score = 73.0 bits (180), Expect = 4e-13
Identities = 55/208 (26%), Positives = 99/208 (47%), Gaps = 33/208 (15%)
Query: 376 LRNINLKVFHGMRVAVCGTVGSGKSSCLSCILGGVPKESGIIRLCGTKAYVAQSPW--IQ 433
+++L V G A+ G G+GKS+ + + G +SG IR+ G + + SP I+
Sbjct: 20 NDDVSLSVKKGEIHALLGENGAGKSTLMKILFGLYQPDSGEIRVDGKEVRIK-SPRDAIR 78
Query: 434 SG--------------KIEENILFGKE------MDRERYERVLEACSLKKDLEVLPFGDQ 473
G + ENI+ G E +DR + ++ S + L V P
Sbjct: 79 LGIGMVHQHFMLVPTLTVAENIILGLEPSKGGLIDRRQARARIKELSERYGLPVDP---D 135
Query: 474 TIIGERGINLSGGQKQRIQIARPLYQDADIFLLDDPFSPVDDHTGAHLFKFC--WVSSSK 531
+ + LS G++QR++I + LY+ A + +LD+P + + LF+ + K
Sbjct: 136 AKVAD----LSVGEQQRVEILKALYRGARLLILDEPTAVLTPQEADELFEILRRLAAEGK 191
Query: 532 TVIYATHQV-EFLPAADLILVIKDGKIT 558
T+I+ TH++ E + AD + V++ GK+
Sbjct: 192 TIIFITHKLKEVMAIADRVTVLRRGKVV 219
|
Length = 501 |
| >gnl|CDD|224058 COG1135, AbcC, ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 71.5 bits (176), Expect = 5e-13
Identities = 53/204 (25%), Positives = 95/204 (46%), Gaps = 27/204 (13%)
Query: 967 GRTGSGKSTLIQTLFRIVESTAGHILIDGKDISLI---GLHDLRTRLSIIPQDPTMFEG- 1022
G +G+GKSTL++ + + T+G + +DG+D++ + L LR ++ +I Q +
Sbjct: 39 GYSGAGKSTLLRLINLLERPTSGSVFVDGQDLTALSEAELRQLRQKIGMIFQHFNLLSSR 98
Query: 1023 TTRSNLD-PLE------EHADEQIWEALDKCQLGDEVRKKKGKLDSQG--------RVLL 1067
T N+ PLE +++ E L+ L D+ + +L S G R L
Sbjct: 99 TVFENVAFPLELAGVPKAEIKQRVAELLELVGLSDKADRYPAQL-SGGQKQRVAIARALA 157
Query: 1068 KKSKVLVLDEATASVDTATDNQIQQTL----RQHFSDCTVVTIAHRITSVLDSA-MVLLL 1122
K+L+ DEAT+++D T I + L R+ T+V I H + V V +L
Sbjct: 158 NNPKILLCDEATSALDPETTQSILELLKDINREL--GLTIVLITHEMEVVKRICDRVAVL 215
Query: 1123 NHGLIKEYDSPTKLLENKSSSFAQ 1146
+ G + E + +++ N + Q
Sbjct: 216 DQGRLVEEGTVSEVFANPKHAITQ 239
|
Length = 339 |
| >gnl|CDD|224050 COG1125, OpuBA, ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 70.4 bits (173), Expect = 7e-13
Identities = 60/202 (29%), Positives = 100/202 (49%), Gaps = 20/202 (9%)
Query: 963 LVLRGRTGSGKSTLIQTLFRIVESTAGHILIDGKDISLIGLHDLRTRLSIIPQDPTMFEG 1022
LVL G +GSGK+T ++ + R++E T+G ILIDG+DIS + +LR ++ + Q +F
Sbjct: 30 LVLIGPSGSGKTTTLKMINRLIEPTSGEILIDGEDISDLDPVELRRKIGYVIQQIGLFPH 89
Query: 1023 -TTRSN-------LDPLEEHADEQIWEALDKCQLG-DEVRKKKGKLDSQG--------RV 1065
T N L +E ++ E LD L E + S G R
Sbjct: 90 LTVAENIATVPKLLGWDKERIKKRADELLDLVGLDPSEYADRYPHELSGGQQQRVGVARA 149
Query: 1066 LLKKSKVLVLDEATASVDTATDNQIQQTLR--QHFSDCTVVTIAHRITSVLDSA-MVLLL 1122
L +L++DE ++D T Q+Q+ ++ Q T+V + H I L A + ++
Sbjct: 150 LAADPPILLMDEPFGALDPITRKQLQEEIKELQKELGKTIVFVTHDIDEALKLADRIAVM 209
Query: 1123 NHGLIKEYDSPTKLLENKSSSF 1144
+ G I +YD+P ++L N ++ F
Sbjct: 210 DAGEIVQYDTPDEILANPANDF 231
|
Length = 309 |
| >gnl|CDD|240339 PTZ00265, PTZ00265, multidrug resistance protein (mdr1); Provisional | Back alignment and domain information |
|---|
Score = 72.8 bits (178), Expect = 9e-13
Identities = 56/170 (32%), Positives = 88/170 (51%), Gaps = 18/170 (10%)
Query: 426 VAQSPWIQSGKIEENILFGKE-MDRERYERVLEACSLKKDLEVLPFGDQTIIGERGINLS 484
V+Q P + + I ENI FGKE RE +R + ++ + +E LP T +G G +LS
Sbjct: 1301 VSQEPMLFNMSIYENIKFGKEDATREDVKRACKFAAIDEFIESLPNKYDTNVGPYGKSLS 1360
Query: 485 GGQKQRIQIARPLYQDADIFLLDDPFSPVDDHTGAHLFKFCWV----SSSKTVIYATHQV 540
GGQKQRI IAR L ++ I LLD+ S +D ++ L + V + KT+I H++
Sbjct: 1361 GGQKQRIAIARALLREPKILLLDEATSSLDSNS-EKLIEKTIVDIKDKADKTIITIAHRI 1419
Query: 541 EFLPAADLILVIKDGKITQAGKYSDILNSGTDFMELVGAHKQALSGLDSI 590
+ +D I+V + T G+ F++ G H++ LS D +
Sbjct: 1420 ASIKRSDKIVVFNNPDRT-----------GS-FVQAHGTHEELLSVQDGV 1457
|
Length = 1466 |
| >gnl|CDD|184195 PRK13635, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 69.7 bits (171), Expect = 9e-13
Identities = 63/229 (27%), Positives = 102/229 (44%), Gaps = 38/229 (16%)
Query: 374 PTLRNINLKVFHGMRVAVCGTVGSGKSSCLSCILGGVPKESGIIRLCGTK---------- 423
L++++ V+ G VA+ G GSGKS+ + G + E+G I + G
Sbjct: 21 YALKDVSFSVYEGEWVAIVGHNGSGKSTLAKLLNGLLLPEAGTITVGGMVLSEETVWDVR 80
Query: 424 ---AYVAQSPWIQ--SGKIEENILFGKE---MDR-ERYERVLEACSLKKDLEVLPFGDQT 474
V Q+P Q +++++ FG E + R E ERV +A + + + F ++
Sbjct: 81 RQVGMVFQNPDNQFVGATVQDDVAFGLENIGVPREEMVERVDQAL---RQVGMEDFLNR- 136
Query: 475 IIGERGINLSGGQKQRIQIARPLYQDADIFLLDDPFSPVDDH-------TGAHLFKFCWV 527
LSGGQKQR+ IA L DI +LD+ S +D T L +
Sbjct: 137 ----EPHRLSGGQKQRVAIAGVLALQPDIIILDEATSMLDPRGRREVLETVRQLKE---- 188
Query: 528 SSSKTVIYATHQVEFLPAADLILVIKDGKITQAGKYSDILNSGTDFMEL 576
TV+ TH ++ AD ++V+ G+I + G +I SG E+
Sbjct: 189 QKGITVLSITHDLDEAAQADRVIVMNKGEILEEGTPEEIFKSGHMLQEI 237
|
Length = 279 |
| >gnl|CDD|233335 TIGR01271, CFTR_protein, cystic fibrosis transmembrane conductor regulator (CFTR) | Back alignment and domain information |
|---|
Score = 72.6 bits (178), Expect = 1e-12
Identities = 72/248 (29%), Positives = 109/248 (43%), Gaps = 34/248 (13%)
Query: 373 NPTLRNINLKVFHGMRVAVCGTVGSGKSSCLSCILGGVPKESGIIRLCGT---------- 422
L++++ V G RV + G GSGKS+ LS +L + E G I++ G
Sbjct: 1232 RAVLQDLSFSVEGGQRVGLLGRTGSGKSTLLSALLRLLSTE-GEIQIDGVSWNSVTLQTW 1290
Query: 423 -KAY--VAQSPWIQSGKIEENILFGKEMDRERYERVLEACSLKKDLEVLPFGDQTIIGER 479
KA+ + Q +I SG +N+ ++ E +V E LK +E P ++ +
Sbjct: 1291 RKAFGVIPQKVFIFSGTFRKNLDPYEQWSDEEIWKVAEEVGLKSVIEQFPDKLDFVLVDG 1350
Query: 480 GINLSGGQKQRIQIARPLYQDADIFLLDDPFSPVDD-------HTGAHLFKFCWVSSSKT 532
G LS G KQ + +AR + A I LLD+P + +D T F C T
Sbjct: 1351 GYVLSNGHKQLMCLARSILSKAKILLLDEPSAHLDPVTLQIIRKTLKQSFSNC------T 1404
Query: 533 VIYATHQVEFLPAADLILVIKDGKITQAGKYSDILNSGTDFMELVGAHKQALSGLDSIDR 592
VI + H+VE L LVI+ + Q +LN + F KQA+S D +
Sbjct: 1405 VILSEHRVEALLECQQFLVIEGSSVKQYDSIQKLLNETSLF-------KQAMSAADRLKL 1457
Query: 593 GPVSERKS 600
P+ R S
Sbjct: 1458 FPLHRRNS 1465
|
The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se [Transport and binding proteins, Anions]. Length = 1490 |
| >gnl|CDD|224048 COG1123, COG1123, ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only] | Back alignment and domain information |
|---|
Score = 71.5 bits (176), Expect = 1e-12
Identities = 52/241 (21%), Positives = 93/241 (38%), Gaps = 51/241 (21%)
Query: 368 DFSSPNPTLRNINLKVFHGMRVAVCGTVGSGKSSCLSCILGGVPKESGII---------- 417
P +R+++ +V G + + G GSGKS+ ++G +P+ I
Sbjct: 17 TDGGRVPAVRDVSFEVEPGEILGIVGESGSGKSTLALALMGLLPEGGRITSGEVILDGRD 76
Query: 418 ----------RLCGTK-AYVAQSPW------IQSGK-IEENILFGKEMDR-ERYERVLEA 458
+L G + A + Q P + G I E + + R E +R +E
Sbjct: 77 LLGLSEREMRKLRGKRIAMIFQDPMTSLNPVMTIGDQIREALRLHGKGSRAEARKRAVEL 136
Query: 459 CSL-----KKDLEVLPFGDQTIIGERGINLSGGQKQRIQIARPLYQDADIFLLDDPFSPV 513
+ + P LSGG +QR+ IA L + + D+P + +
Sbjct: 137 LEQVGLPDPERRDRYPH-----------QLSGGMRQRVMIAMALALKPKLLIADEPTTAL 185
Query: 514 DDHTGA----HLFKFCWVSSSKTVIYATHQVEFLP-AADLILVIKDGKITQAGKYSDILN 568
D T A L V++ TH + + AD ++V+ G+I + G +IL+
Sbjct: 186 DVTTQAQILDLLKDLQ-RELGMAVLFITHDLGVVAELADRVVVMYKGEIVETGPTEEILS 244
Query: 569 S 569
+
Sbjct: 245 N 245
|
Length = 539 |
| >gnl|CDD|213229 cd03262, ABC_HisP_GlnQ, ATP-binding cassette domain of the histidine and glutamine transporters | Back alignment and domain information |
|---|
Score = 67.9 bits (167), Expect = 1e-12
Identities = 59/222 (26%), Positives = 86/222 (38%), Gaps = 56/222 (25%)
Query: 372 PNPTLRNINLKVFHGMRVAVCGTVGSGKSSCLSCILGGVPKESGIIRLCGTKAYVAQSPW 431
L+ I+L V G V + G GSGKS+ L CI +SG I + G K +
Sbjct: 12 DFHVLKGIDLTVKKGEVVVIIGPSGSGKSTLLRCINLLEEPDSGTIIIDGLKLTDDKKNI 71
Query: 432 IQSGK----------------IEENILFG----KEMDR-ERYERVLEACSLKKDLEVLPF 470
+ + + ENI K M + E ER LE LE +
Sbjct: 72 NELRQKVGMVFQQFNLFPHLTVLENITLAPIKVKGMSKAEAEERALEL------LEKVGL 125
Query: 471 GDQTIIGERGINLSGGQKQRIQIARPLYQDADIFLLDDPFSPVDD--------------H 516
D+ LSGGQ+QR+ IAR L + + L D+P S +D
Sbjct: 126 ADK--ADAYPAQLSGGQQQRVAIARALAMNPKVMLFDEPTSALDPELVGEVLDVMKDLAE 183
Query: 517 TGAHLFKFCWVSSSKTVIYATHQVEF-LPAADLILVIKDGKI 557
G T++ TH++ F AD ++ + DG+I
Sbjct: 184 EG------------MTMVVVTHEMGFAREVADRVIFMDDGRI 213
|
HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, respectively. Histidine permease is a multi-subunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryotic extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQMP system of S. typhimurium, where HisJ is the extracellular solute binding proteins and HisP is the ABC protein. Length = 213 |
| >gnl|CDD|132302 TIGR03258, PhnT, 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT | Back alignment and domain information |
|---|
Score = 70.4 bits (172), Expect = 1e-12
Identities = 57/218 (26%), Positives = 94/218 (43%), Gaps = 43/218 (19%)
Query: 373 NPTLRNINLKVFHGMRVAVCGTVGSGKSSCLSCILGGVPKESGIIRLCGTKAYVAQSPWI 432
N L +++L++ G +A+ G G GK++ L I G V R+ + +P
Sbjct: 18 NTVLDDLSLEIEAGELLALIGKSGCGKTTLLRAIAGFVKAAGLTGRIAIADRDLTHAPPH 77
Query: 433 QSG--------------KIEENILFGKEMDRERY----ERVLEACSLKKDLEVLPFGDQT 474
+ G K+E+N+ FG + ERV +A L+++ GD
Sbjct: 78 KRGLALLFQNYALFPHLKVEDNVAFGLRAQKMPKADIAERVADA------LKLVGLGDA- 130
Query: 475 IIGER-GINLSGGQKQRIQIARPLYQDADIFLLDDPFSPVDDHTGAHLFKFCWVSSSK-- 531
LSGG +QRI IAR + + D+ LLD+P S +D + A++
Sbjct: 131 --AAHLPAQLSGGMQQRIAIARAIAIEPDVLLLDEPLSALDANIRANM-----REEIAAL 183
Query: 532 -------TVIYATH-QVEFLPAADLILVIKDGKITQAG 561
T++ TH Q + L AD ++KDG++ G
Sbjct: 184 HEELPELTILCVTHDQDDALTLADKAGIMKDGRLAAHG 221
|
This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate. Length = 362 |
| >gnl|CDD|213181 cd03214, ABC_Iron-Siderophores_B12_Hemin, ATP-binding component of iron-siderophores, vitamin B12 and hemin transporters and related proteins | Back alignment and domain information |
|---|
Score = 66.7 bits (164), Expect = 2e-12
Identities = 47/172 (27%), Positives = 80/172 (46%), Gaps = 42/172 (24%)
Query: 967 GRTGSGKSTLIQTLFRIVESTAGHILIDGKDISLIGLHDLRTRLSIIPQDPTMFEGTTRS 1026
G G+GKSTL++TL +++ ++G IL+DGKD++ + +L +++ +PQ
Sbjct: 32 GPNGAGKSTLLKTLAGLLKPSSGEILLDGKDLASLSPKELARKIAYVPQ----------- 80
Query: 1027 NLDPLEEHADEQIWEALDKCQLGDEVRKKKGKLDSQG--------RVLLKKSKVLVLDEA 1078
AL+ L + +L S G R L ++ +L+LDE
Sbjct: 81 ---------------ALELLGLAHLADRPFNEL-SGGERQRVLLARALAQEPPILLLDEP 124
Query: 1079 TASVDTATDNQIQ--QTLRQ--HFSDCTVVTIAHRITSVLDSA-MVLLLNHG 1125
T+ +D A +QI+ + LR+ TVV + H + A V+LL G
Sbjct: 125 TSHLDIA--HQIELLELLRRLARERGKTVVMVLHDLNLAARYADRVILLKDG 174
|
ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters. Length = 180 |
| >gnl|CDD|215650 pfam00005, ABC_tran, ABC transporter | Back alignment and domain information |
|---|
Score = 64.7 bits (158), Expect = 2e-12
Identities = 39/129 (30%), Positives = 51/129 (39%), Gaps = 27/129 (20%)
Query: 400 SSCLSCILGGVPKESGIIRLCGTK--------------AYVAQSPWI-QSGKIEENILFG 444
S+ L I G + SG I L G V Q P + + EN+ FG
Sbjct: 1 STLLKLITGLLQPTSGTILLDGEDGTGLSSRKLLRKRIGVVFQDPQLFPELTVRENLFFG 60
Query: 445 --KEMDRERYERVLEACSLKKDLEVLPFGDQTIIGERGINLSGGQKQRIQIARPLYQDAD 502
+ R E LE L L+ E LSGGQKQR+ IAR L +
Sbjct: 61 LRDKEADARAEEALERVGLPDFLDR----------EPVGTLSGGQKQRVAIARALLKKPK 110
Query: 503 IFLLDDPFS 511
+ LLD+P +
Sbjct: 111 LLLLDEPTA 119
|
ABC transporters for a large family of proteins responsible for translocation of a variety of compounds across biological membranes. ABC transporters are the largest family of proteins in many completely sequenced bacteria. ABC transporters are composed of two copies of this domain and two copies of a transmembrane domain pfam00664. These four domains may belong to a single polypeptide as in human CFTR, or belong in different polypeptide chains. Length = 119 |
| >gnl|CDD|213224 cd03257, ABC_NikE_OppD_transporters, ATP-binding cassette domain of nickel/oligopeptides specific transporters | Back alignment and domain information |
|---|
Score = 67.9 bits (167), Expect = 2e-12
Identities = 53/201 (26%), Positives = 85/201 (42%), Gaps = 48/201 (23%)
Query: 967 GRTGSGKSTLIQTLFRIVESTAGHILIDGKDISLIGLHDLRTR---LSIIPQDPTMFEGT 1023
G +GSGKSTL + + +++ T+G I+ DGKD+ + + R + ++ QDP
Sbjct: 38 GESGSGKSTLARAILGLLKPTSGSIIFDGKDLLKLSRRLRKIRRKEIQMVFQDP------ 91
Query: 1024 TRSNLDPL---EEHADEQIWEAL-DKCQLGDEVRKKKGKLD------------------- 1060
S+L+P E QI E L +L + +K+ L
Sbjct: 92 -MSSLNPRMTIGE----QIAEPLRIHGKLSKKEARKEAVLLLLVGVGLPEEVLNRYPHEL 146
Query: 1061 SQG--------RVLLKKSKVLVLDEATASVDTATDNQIQQTLR--QHFSDCTVVTIAHRI 1110
S G R L K+L+ DE T+++D + QI L+ Q T++ I H +
Sbjct: 147 SGGQRQRVAIARALALNPKLLIADEPTSALDVSVQAQILDLLKKLQEELGLTLLFITHDL 206
Query: 1111 TSVLDSA-MVLLLNHGLIKEY 1130
V A V ++ G I E
Sbjct: 207 GVVAKIADRVAVMYAGKIVEE 227
|
The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF. Length = 228 |
| >gnl|CDD|223562 COG0488, Uup, ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only] | Back alignment and domain information |
|---|
Score = 71.1 bits (175), Expect = 2e-12
Identities = 54/224 (24%), Positives = 90/224 (40%), Gaps = 39/224 (17%)
Query: 376 LRNINLKVFHGMRVAVCGTVGSGKSSCLSCILGGVPKESGIIRLCGTK--AYVAQSP--- 430
L N++L + G R+ + G G+GKS+ L + G + +SG + Y++Q P
Sbjct: 19 LENVSLTLNPGERIGLVGRNGAGKSTLLKILAGELEPDSGEVTRPKGLRVGYLSQEPPLD 78
Query: 431 ----------------WIQSGKIEENILFGKEMDRERYERVLEACS----------LKKD 464
++EE + D E + ++
Sbjct: 79 PEKTVLDYVIEGFGELRELLAELEEAYALLADPDDELLAELEALLEELDGWTLEARAEEA 138
Query: 465 LEVLPF-GDQTIIGERGINLSGGQKQRIQIARPLYQDADIFLLDDPFSPVDDHTGAHLFK 523
L L F + + LSGG ++R+ +AR L ++ D+ LLD+P + +D + L
Sbjct: 139 LLGLGFPDEDRPVSS----LSGGWRRRVALARALLEEPDLLLLDEPTNHLDLESIEWLED 194
Query: 524 FCWVSSSKTVIYATHQVEFL-PAADLILVIKDGKITQ-AGKYSD 565
+ TVI +H FL A IL + GK+T G YS
Sbjct: 195 Y-LKRYPGTVIVVSHDRYFLDNVATHILELDRGKLTPYKGNYSS 237
|
Length = 530 |
| >gnl|CDD|172200 PRK13652, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 68.7 bits (168), Expect = 2e-12
Identities = 62/227 (27%), Positives = 99/227 (43%), Gaps = 37/227 (16%)
Query: 366 SWDFSSPNPTLRNINLKVFHGMRVAVCGTVGSGKSSCLSCILGGVPKESGIIRLCG---T 422
+ +S L NIN R+AV G G+GKS+ G + SG + + G T
Sbjct: 10 CYSYSGSKEALNNINFIAPRNSRIAVIGPNGAGKSTLFRHFNGILKPTSGSVLIRGEPIT 69
Query: 423 KA----------YVAQSP--WIQSGKIEENILFG-------KEMDRERYERVLEACSLKK 463
K V Q+P I S +E++I FG +E R L L++
Sbjct: 70 KENIREVRKFVGLVFQNPDDQIFSPTVEQDIAFGPINLGLDEETVAHRVSSALHMLGLEE 129
Query: 464 DLEVLPFGDQTIIGERGINLSGGQKQRIQIARPLYQDADIFLLDDPFSPVDDHTGAHLFK 523
+ +P +LSGG+K+R+ IA + + + +LD+P + +D L
Sbjct: 130 LRDRVPH-----------HLSGGEKKRVAIAGVIAMEPQVLVLDEPTAGLDPQGVKELID 178
Query: 524 FC---WVSSSKTVIYATHQVEFLPA-ADLILVIKDGKITQAGKYSDI 566
F + TVI++THQ++ +P AD I V+ G+I G +I
Sbjct: 179 FLNDLPETYGMTVIFSTHQLDLVPEMADYIYVMDKGRIVAYGTVEEI 225
|
Length = 277 |
| >gnl|CDD|188317 TIGR03415, ABC_choXWV_ATP, choline ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 70.2 bits (172), Expect = 2e-12
Identities = 68/249 (27%), Positives = 102/249 (40%), Gaps = 55/249 (22%)
Query: 378 NINLKVFHGMRVAVCGTVGSGKSSCLSCILGGVPKESGIIRLCGTKAYV----------- 426
N +L + G + G GSGKS+ L + G P G + + V
Sbjct: 42 NASLDIEEGEICVLMGLSGSGKSTLLRAVNGLNPVSRGSVLVKDGDGSVDVANCDAATLR 101
Query: 427 --------------AQSPWIQSGKIEENILFGKEM----DRERYERVLEACSLKKDLEVL 468
A PW +EEN+ FG EM ER +RV E LE++
Sbjct: 102 RLRTHRVSMVFQQFALLPWRT---VEENVAFGLEMQGMPKAERRKRVDE------QLELV 152
Query: 469 PFGD--QTIIGERGINLSGGQKQRIQIARPLYQDADIFLLDDPFSPVDDHTGAHL----- 521
GE LSGG +QR+ +AR +A I L+D+PFS +D L
Sbjct: 153 GLAQWADRKPGE----LSGGMQQRVGLARAFATEAPILLMDEPFSALDPLIRTQLQDELL 208
Query: 522 -FKFCWVSSSKTVIYATHQV-EFLPAADLILVIKDGKITQAGKYSDI-LNSGTDFMELVG 578
+ KT+++ +H + E L + I +++ G+I Q G +I LN D++
Sbjct: 209 ELQ---SKLKKTIVFVSHDLDEALKIGNRIAIMEGGRIIQHGTPEEIVLNPANDYVADFV 265
Query: 579 AHKQALSGL 587
AH L+ L
Sbjct: 266 AHTNPLNVL 274
|
Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines [Transport and binding proteins, Amino acids, peptides and amines]. Length = 382 |
| >gnl|CDD|237455 PRK13637, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 68.9 bits (169), Expect = 2e-12
Identities = 57/185 (30%), Positives = 96/185 (51%), Gaps = 25/185 (13%)
Query: 965 LRGRTGSGKSTLIQTLFRIVESTAGHILIDGKDIS--LIGLHDLRTRLSIIPQDP--TMF 1020
L G TGSGKSTLIQ L +++ T+G I+IDG DI+ + L D+R ++ ++ Q P +F
Sbjct: 38 LIGHTGSGKSTLIQHLNGLLKPTSGKIIIDGVDITDKKVKLSDIRKKVGLVFQYPEYQLF 97
Query: 1021 EGTTR-------SNLDPLEEHADEQIWEALDKCQLGDEVRKKKGKLD---SQGR------ 1064
E T NL EE + ++ A++ L E K K + Q R
Sbjct: 98 EETIEKDIAFGPINLGLSEEEIENRVKRAMNIVGLDYEDYKDKSPFELSGGQKRRVAIAG 157
Query: 1065 VLLKKSKVLVLDEATASVDTATDNQIQ---QTLRQHFSDCTVVTIAHRITSVLDSA-MVL 1120
V+ + K+L+LDE TA +D ++I + L + + + T++ ++H + V A ++
Sbjct: 158 VVAMEPKILILDEPTAGLDPKGRDEILNKIKELHKEY-NMTIILVSHSMEDVAKLADRII 216
Query: 1121 LLNHG 1125
++N G
Sbjct: 217 VMNKG 221
|
Length = 287 |
| >gnl|CDD|234199 TIGR03410, urea_trans_UrtE, urea ABC transporter, ATP-binding protein UrtE | Back alignment and domain information |
|---|
Score = 67.6 bits (166), Expect = 2e-12
Identities = 49/153 (32%), Positives = 73/153 (47%), Gaps = 29/153 (18%)
Query: 376 LRNINLKVFHGMRVAVCGTVGSGKSSCLSCILGGVPKESGIIRLCGTK------------ 423
LR ++L+V G V G G GK++ L ++G +P +SG IRL G
Sbjct: 16 LRGVSLEVPKGEVTCVLGRNGVGKTTLLKTLMGLLPVKSGSIRLDGEDITKLPPHERARA 75
Query: 424 --AYVAQSPWIQSG-KIEENILFG----KEMDRERYERVLEACSLKKDLEVLPFGDQTII 476
AYV Q I +EEN+L G R+ + + E + K++ +
Sbjct: 76 GIAYVPQGREIFPRLTVEENLLTGLAALPRRSRKIPDEIYELFPVLKEM----------L 125
Query: 477 GERGINLSGGQKQRIQIARPLYQDADIFLLDDP 509
G RG +LSGGQ+Q++ IAR L + LLD+P
Sbjct: 126 GRRGGDLSGGQQQQLAIARALVTRPKLLLLDEP 158
|
Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity [Transport and binding proteins, Amino acids, peptides and amines]. Length = 230 |
| >gnl|CDD|240339 PTZ00265, PTZ00265, multidrug resistance protein (mdr1); Provisional | Back alignment and domain information |
|---|
Score = 70.8 bits (173), Expect = 3e-12
Identities = 49/158 (31%), Positives = 82/158 (51%), Gaps = 21/158 (13%)
Query: 988 AGHILIDGKDISLIGLHDLRTRLSIIPQDPTMFEGTTRSNLDPLEEHADEQIWEALDKCQ 1047
+G IL+DG DI L DLR SI+ Q+P +F + N+ +E A + + K
Sbjct: 1276 SGKILLDGVDICDYNLKDLRNLFSIVSQEPMLFNMSIYENIKFGKEDATREDVKRACKFA 1335
Query: 1048 LGDE-VRKKKGKLDSQ------------------GRVLLKKSKVLVLDEATASVDTATDN 1088
DE + K D+ R LL++ K+L+LDEAT+S+D+ ++
Sbjct: 1336 AIDEFIESLPNKYDTNVGPYGKSLSGGQKQRIAIARALLREPKILLLDEATSSLDSNSEK 1395
Query: 1089 QIQQTLR--QHFSDCTVVTIAHRITSVLDSAMVLLLNH 1124
I++T+ + +D T++TIAHRI S+ S +++ N+
Sbjct: 1396 LIEKTIVDIKDKADKTIITIAHRIASIKRSDKIVVFNN 1433
|
Length = 1466 |
| >gnl|CDD|106587 PRK13644, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 68.1 bits (166), Expect = 3e-12
Identities = 64/229 (27%), Positives = 104/229 (45%), Gaps = 38/229 (16%)
Query: 366 SWDFSSPNPTLRNINLKVFHGMRVAVCGTVGSGKSSCLSCILGGV--PKESGII------ 417
S+ + P L NINL + G + + G GSGKS+ L+ L G+ P++ ++
Sbjct: 8 SYSYPDGTPALENINLVIKKGEYIGIIGKNGSGKST-LALHLNGLLRPQKGKVLVSGIDT 66
Query: 418 ----RLCGTKAYVA---QSPWIQ--SGKIEENILFGKE-------MDRERYERVLEACSL 461
+L G + V Q+P Q +EE++ FG E R+R +R L L
Sbjct: 67 GDFSKLQGIRKLVGIVFQNPETQFVGRTVEEDLAFGPENLCLPPIEIRKRVDRALAEIGL 126
Query: 462 KKDLEVLPFGDQTIIGERGINLSGGQKQRIQIARPLYQDADIFLLDDPFSPVDDHTGAHL 521
+K P LSGGQ Q + +A L + + + D+ S +D +G +
Sbjct: 127 EKYRHRSP-----------KTLSGGQGQCVALAGILTMEPECLIFDEVTSMLDPDSGIAV 175
Query: 522 FKFC--WVSSSKTVIYATHQVEFLPAADLILVIKDGKITQAGKYSDILN 568
+ KT++Y TH +E L AD I+V+ GKI G+ ++L+
Sbjct: 176 LERIKKLHEKGKTIVYITHNLEELHDADRIIVMDRGKIVLEGEPENVLS 224
|
Length = 274 |
| >gnl|CDD|224049 COG1124, DppF, ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 67.7 bits (166), Expect = 3e-12
Identities = 57/247 (23%), Positives = 95/247 (38%), Gaps = 43/247 (17%)
Query: 355 DTAIEIIDGSFSWD-FSSPNPTLRNINLKVFHGMRVAVCGTVGSGKSSCLSCILGGVPKE 413
T + + + S + L N++L++ G + + G GSGKS+ + G
Sbjct: 1 MTLLSVRNLSIVYGGGKFAFHALNNVSLEIERGETLGIVGESGSGKSTLARLLAGLEKPS 60
Query: 414 SGIIRLCGTKA--------------YVAQSP-------WIQSGKIEENILFGKEMDRE-R 451
SG I L G V Q P + E + + R
Sbjct: 61 SGSILLDGKPLAPKKRAKAFYRPVQMVFQDPYSSLNPRRTVGRILSEPLRPHGLSKSQQR 120
Query: 452 YERVLEACSLKKDLEVLPFGDQTIIGERGIN-LSGGQKQRIQIARPLYQDADIFLLDDPF 510
+L+ L L +R + LSGGQ+QRI IAR L + + +LD+P
Sbjct: 121 IAELLDQVGLPP--SFL---------DRRPHELSGGQRQRIAIARALIPEPKLLILDEPT 169
Query: 511 SPVDDHTGA---HLFKFCWVSSSKTVIYATHQ---VEFLPAADLILVIKDGKITQAGKYS 564
S +D A +L T ++ +H VE + D I V+ +G+I + G
Sbjct: 170 SALDVSVQAQILNLLLELKKERGLTYLFISHDLALVEHM--CDRIAVMDNGQIVEIGPTE 227
Query: 565 DILNSGT 571
++L+ +
Sbjct: 228 ELLSHPS 234
|
Length = 252 |
| >gnl|CDD|224051 COG1126, GlnQ, ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 67.1 bits (165), Expect = 3e-12
Identities = 57/220 (25%), Positives = 86/220 (39%), Gaps = 37/220 (16%)
Query: 376 LRNINLKVFHGMRVAVCGTVGSGKSSCLSCILGGVPKESGIIRLCGTKAYVAQSPWIQSG 435
L+ I+L V G V + G GSGKS+ L C+ G +SG I + G +
Sbjct: 18 LKGISLSVEKGEVVVIIGPSGSGKSTLLRCLNGLEEPDSGSITVDGEDVGDKKDILKLRR 77
Query: 436 KI---------------EENILFG--------KEMDRERYERVLEACSLKKDLEVLPFGD 472
K+ EN+ K RE+ +LE L + P
Sbjct: 78 KVGMVFQQFNLFPHLTVLENVTLAPVKVKKLSKAEAREKALELLEKVGLADKADAYPA-- 135
Query: 473 QTIIGERGINLSGGQKQRIQIARPLYQDADIFLLDDPFSPVDDHTGAHLFKFCW--VSSS 530
LSGGQ+QR+ IAR L D + L D+P S +D +
Sbjct: 136 ---------QLSGGQQQRVAIARALAMDPKVMLFDEPTSALDPELVGEVLDVMKDLAEEG 186
Query: 531 KTVIYATHQVEF-LPAADLILVIKDGKITQAGKYSDILNS 569
T+I TH++ F AD ++ + GKI + G + ++
Sbjct: 187 MTMIIVTHEMGFAREVADRVIFMDQGKIIEEGPPEEFFDN 226
|
Length = 240 |
| >gnl|CDD|237456 PRK13641, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 67.9 bits (166), Expect = 4e-12
Identities = 56/199 (28%), Positives = 96/199 (48%), Gaps = 23/199 (11%)
Query: 965 LRGRTGSGKSTLIQTLFRIVESTAGHILIDGKDISL----IGLHDLRTRLSIIPQDP--T 1018
L G TGSGKSTL+Q +++ ++G I I G I+ L LR ++S++ Q P
Sbjct: 38 LVGHTGSGKSTLMQHFNALLKPSSGTITIAGYHITPETGNKNLKKLRKKVSLVFQFPEAQ 97
Query: 1019 MFEGTTRS-------NLDPLEEHADEQIWEALDKCQLGDEVRKKKGKLDSQGR------- 1064
+FE T N E+ A E+ + L K L +++ K S G+
Sbjct: 98 LFENTVLKDVEFGPKNFGFSEDEAKEKALKWLKKVGLSEDLISKSPFELSGGQMRRVAIA 157
Query: 1065 -VLLKKSKVLVLDEATASVDTATDNQIQQTLRQH-FSDCTVVTIAHRITSVLDSAM-VLL 1121
V+ + ++L LDE A +D ++ Q + + + TV+ + H + V + A VL+
Sbjct: 158 GVMAYEPEILCLDEPAAGLDPEGRKEMMQLFKDYQKAGHTVILVTHNMDDVAEYADDVLV 217
Query: 1122 LNHGLIKEYDSPTKLLENK 1140
L HG + ++ SP ++ +K
Sbjct: 218 LEHGKLIKHASPKEIFSDK 236
|
Length = 287 |
| >gnl|CDD|213196 cd03229, ABC_Class3, ATP-binding cassette domain of the binding protein-dependent transport systems | Back alignment and domain information |
|---|
Score = 65.3 bits (160), Expect = 5e-12
Identities = 51/180 (28%), Positives = 79/180 (43%), Gaps = 48/180 (26%)
Query: 963 LVLRGRTGSGKSTLIQTLFRIVESTAGHILIDGKDISLIGLH--DLRTRLSIIPQDPTMF 1020
+ L G +GSGKSTL++ + + E +G ILIDG+D++ + LR R+ ++ QD +F
Sbjct: 29 VALLGPSGSGKSTLLRCIAGLEEPDSGSILIDGEDLTDLEDELPPLRRRIGMVFQDFALF 88
Query: 1021 EGTTRSNLDPLEEHADEQIWEALDKCQLGDEVRKKKGKLDSQG--------RVLLKKSKV 1072
+L L+ LG L S G R L V
Sbjct: 89 -----PHLT------------VLENIALG---------L-SGGQQQRVALARALAMDPDV 121
Query: 1073 LVLDEATASVDTATDNQIQQTLRQHF--SDCTVVTIAHRITSVLDSAM-----VLLLNHG 1125
L+LDE T+++D T +++ L+ TVV + H LD A V++L G
Sbjct: 122 LLLDEPTSALDPITRREVRALLKSLQAQLGITVVLVTHD----LDEAARLADRVVVLRDG 177
|
This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 178 |
| >gnl|CDD|131368 TIGR02315, ABC_phnC, phosphonate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 66.9 bits (164), Expect = 5e-12
Identities = 51/208 (24%), Positives = 95/208 (45%), Gaps = 39/208 (18%)
Query: 963 LVLRGRTGSGKSTLIQTLFRIVESTAGHILIDGKDISLIGLHDL---RTRLSIIPQDPTM 1019
+ + G +G+GKSTL++ + R+VE ++G IL++G DI+ + L R R+ +I Q +
Sbjct: 31 VAIIGPSGAGKSTLLRCINRLVEPSSGSILLEGTDITKLRGKKLRKLRRRIGMIFQHYNL 90
Query: 1020 ----------------FEGTTRSNLDPLEEHADEQIWEALDKCQLGDEVRKKKGKLD--S 1061
++ T RS L E E+ AL++ L D+ ++ +L
Sbjct: 91 IERLTVLENVLHGRLGYKPTWRSLLGRFSEEDKERALSALERVGLADKAYQRADQLSGGQ 150
Query: 1062 QGRV-----LLKKSKVLVLDEATASVDTATDNQIQQTLR---QHFSDCTVVTIAHRITSV 1113
Q RV L ++ +++ DE AS+D T Q+ L+ + ++ +
Sbjct: 151 QQRVAIARALAQQPDLILADEPIASLDPKTSKQVMDYLKRINKEDGITVIINLHQ----- 205
Query: 1114 LDSAM-----VLLLNHGLIKEYDSPTKL 1136
+D A ++ L G I +P++L
Sbjct: 206 VDLAKKYADRIVGLKAGEIVFDGAPSEL 233
|
Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates [Transport and binding proteins, Anions]. Length = 243 |
| >gnl|CDD|184199 PRK13639, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 67.0 bits (164), Expect = 6e-12
Identities = 63/227 (27%), Positives = 106/227 (46%), Gaps = 40/227 (17%)
Query: 369 FSSPNPT--LRNINLKVFHGMRVAVCGTVGSGKSSCL------------SCILGGVP--- 411
+S P+ T L+ IN K G VA+ G G+GKS+ ++ G P
Sbjct: 9 YSYPDGTEALKGINFKAEKGEMVALLGPNGAGKSTLFLHFNGILKPTSGEVLIKGEPIKY 68
Query: 412 KESGIIRLCGTKAYVAQSPWIQ--SGKIEENILFG-------KEMDRERYERVLEACSLK 462
+ ++ + T V Q+P Q + +EE++ FG KE +R + L+A ++
Sbjct: 69 DKKSLLEVRKTVGIVFQNPDDQLFAPTVEEDVAFGPLNLGLSKEEVEKRVKEALKAVGME 128
Query: 463 KDLEVLPFGDQTIIGERGINLSGGQKQRIQIARPLYQDADIFLLDDPFSPVDDHTGAHLF 522
P +LSGGQK+R+ IA L +I +LD+P S +D + +
Sbjct: 129 GFENKPPH-----------HLSGGQKKRVAIAGILAMKPEIIVLDEPTSGLDPMGASQIM 177
Query: 523 KFCWVSSSK--TVIYATHQVEFLPA-ADLILVIKDGKITQAGKYSDI 566
K + + + T+I +TH V+ +P AD + V+ DGKI + G ++
Sbjct: 178 KLLYDLNKEGITIIISTHDVDLVPVYADKVYVMSDGKIIKEGTPKEV 224
|
Length = 275 |
| >gnl|CDD|224048 COG1123, COG1123, ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only] | Back alignment and domain information |
|---|
Score = 68.8 bits (169), Expect = 8e-12
Identities = 51/226 (22%), Positives = 88/226 (38%), Gaps = 44/226 (19%)
Query: 376 LRNINLKVFHGMRVAVCGTVGSGKSSCLSCILGGVPKESGIIRLCGTKAYVAQSPW---- 431
+ +++ + G + + G GSGKS+ + G +P SG I G +
Sbjct: 307 VDDVSFDLREGETLGLVGESGSGKSTLARILAGLLPPSSGSIIFDGQDLDLTGGELRRLR 366
Query: 432 --IQ------------SGKIEENI-----LFGKEMDRERYERVLEACSLKKDLEVLPFGD 472
IQ + + + + G ER RV E +L LP
Sbjct: 367 RRIQMVFQDPYSSLNPRMTVGDILAEPLRIHGGGSGAERRARVAEL----LELVGLP--- 419
Query: 473 QTIIGERGIN-LSGGQKQRIQIARPLYQDADIFLLDDPFSPVDDHTGAHLFKFCWVSSSK 531
+R + LSGGQ+QR+ IAR L + + +LD+P S +D A +
Sbjct: 420 -PEFLDRYPHELSGGQRQRVAIARALALEPKLLILDEPVSALDVSVQAQVLN----LLKD 474
Query: 532 -------TVIYATHQVEFLPA-ADLILVIKDGKITQAGKYSDILNS 569
T ++ +H + + AD + V+ DG+I + G + +
Sbjct: 475 LQEELGLTYLFISHDLAVVRYIADRVAVMYDGRIVEEGPTEKVFEN 520
|
Length = 539 |
| >gnl|CDD|213262 cd03295, ABC_OpuCA_Osmoprotection, ATP-binding cassette domain of the osmoprotectant transporter | Back alignment and domain information |
|---|
Score = 65.4 bits (160), Expect = 1e-11
Identities = 57/213 (26%), Positives = 97/213 (45%), Gaps = 31/213 (14%)
Query: 963 LVLRGRTGSGKSTLIQTLFRIVESTAGHILIDGKDISLIGLHDLRTRLSIIPQDPTMFE- 1021
LVL G +GSGK+T ++ + R++E T+G I IDG+DI +LR ++ + Q +F
Sbjct: 30 LVLIGPSGSGKTTTMKMINRLIEPTSGEIFIDGEDIREQDPVELRRKIGYVIQQIGLFPH 89
Query: 1022 -------GTTRSNLDPLEEHADEQIWEALDKCQLGDE--VRKKKGKLD--SQGRV----- 1065
L +E E+ E L L + +L Q RV
Sbjct: 90 MTVEENIALVPKLLKWPKEKIRERADELLALVGLDPAEFADRYPHELSGGQQQRVGVARA 149
Query: 1066 LLKKSKVLVLDEATASVDTATDNQIQQTLR--QHFSDCTVVTIAHRITSVLDSAMVL--- 1120
L +L++DE ++D T +Q+Q+ + Q T+V + H I D A L
Sbjct: 150 LAADPPLLLMDEPFGALDPITRDQLQEEFKRLQQELGKTIVFVTHDI----DEAFRLADR 205
Query: 1121 --LLNHGLIKEYDSPTKLLENKSSSFAQLVAEY 1151
++ +G I + +P ++L + ++ F VAE+
Sbjct: 206 IAIMKNGEIVQVGTPDEILRSPANDF---VAEF 235
|
OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment. ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 242 |
| >gnl|CDD|237648 PRK14250, PRK14250, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 65.6 bits (160), Expect = 1e-11
Identities = 64/244 (26%), Positives = 102/244 (41%), Gaps = 42/244 (17%)
Query: 358 IEIIDGSFSWDFSSPNPTLRNINLKVFHGMRVAVCGTVGSGKSSCLSCI----------- 406
IE + S+ S L++I++K G + G G+GKS+ + I
Sbjct: 4 IEFKEVSY---SSFGKEILKDISVKFEGGAIYTIVGPSGAGKSTLIKLINRLIDPTEGSI 60
Query: 407 -LGGVP-KESGIIRLCGTKAYVAQSPWIQSGKIEENILFG------KEMDRERYERVLEA 458
+ GV K +I L V Q P + G +++NI +G K +D E Y L
Sbjct: 61 LIDGVDIKTIDVIDLRRKIGMVFQQPHLFEGTVKDNIEYGPMLKGEKNVDVEYY---LSI 117
Query: 459 CSLKKDLEVLPFGDQTIIGERGI-NLSGGQKQRIQIARPLYQDADIFLLDDPFSPVDDHT 517
L K+ R + NLSGG+ QR+ IAR L + ++ LLD+P S +D +
Sbjct: 118 VGLNKEYAT-----------RDVKNLSGGEAQRVSIARTLANNPEVLLLDEPTSALDPTS 166
Query: 518 GAHLFKFCWVSSSK---TVIYATHQVEFLP-AADLILVIKDGKITQAGK-YSDILNSGTD 572
+ + +K TVI+ TH +E D + G + + K Y N +
Sbjct: 167 TEIIEELIVKLKNKMNLTVIWITHNMEQAKRIGDYTAFLNKGILVEYAKTYDFFTNPQNE 226
Query: 573 FMEL 576
+L
Sbjct: 227 VTKL 230
|
Length = 241 |
| >gnl|CDD|213228 cd03261, ABC_Org_Solvent_Resistant, ATP-binding cassette transport system involved in resistant to organic solvents | Back alignment and domain information |
|---|
Score = 65.6 bits (161), Expect = 1e-11
Identities = 52/192 (27%), Positives = 90/192 (46%), Gaps = 27/192 (14%)
Query: 963 LVLRGRTGSGKSTLIQTLFRIVESTAGHILIDGKDI---SLIGLHDLRTRLSIIPQDPTM 1019
L + G +GSGKSTL++ + ++ +G +LIDG+DI S L+ LR R+ ++ Q +
Sbjct: 29 LAIIGPSGSGKSTLLRLIVGLLRPDSGEVLIDGEDISGLSEAELYRLRRRMGMLFQSGAL 88
Query: 1020 FEG-TTRSNLD-PLEEHA-------DEQIWEALDKCQLGDEVRKKKGKLDSQG---RVLL 1067
F+ T N+ PL EH E + E L+ L +L S G RV L
Sbjct: 89 FDSLTVFENVAFPLREHTRLSEEEIREIVLEKLEAVGLRGAEDLYPAEL-SGGMKKRVAL 147
Query: 1068 KKS-----KVLVLDEATASVDTATDNQIQQ---TLRQHFSDCTVVTIAHRITSVLDSA-- 1117
++ ++L+ DE TA +D I +L++ T + + H + + A
Sbjct: 148 ARALALDPELLLYDEPTAGLDPIASGVIDDLIRSLKKEL-GLTSIMVTHDLDTAFAIADR 206
Query: 1118 MVLLLNHGLIKE 1129
+ +L + ++ E
Sbjct: 207 IAVLYDGKIVAE 218
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 235 |
| >gnl|CDD|213227 cd03260, ABC_PstB_phosphate_transporter, ATP-binding cassette domain of the phosphate transport system | Back alignment and domain information |
|---|
Score = 65.3 bits (160), Expect = 1e-11
Identities = 57/230 (24%), Positives = 93/230 (40%), Gaps = 65/230 (28%)
Query: 376 LRNINLKVFHGMRVAVCGTVGSGKSSCLSCI---LGGVPKE--SGIIRLCGTKAY----- 425
L++I+L + G A+ G G GKS+ L + +P G + L G Y
Sbjct: 16 LKDISLDIPKGEITALIGPSGCGKSTLLRLLNRLNDLIPGAPDEGEVLLDGKDIYDLDVD 75
Query: 426 ----------VAQSPWIQSGKIEENILFG--------KEMDRERYERVLEACSLKKDLEV 467
V Q P G I +N+ +G KE ER E L +L ++
Sbjct: 76 VLELRRRVGMVFQKPNPFPGSIYDNVAYGLRLHGIKLKEELDERVEEALRKAALWDEV-- 133
Query: 468 LPFGDQTIIGERGINLSGGQKQRIQIARPLYQDADIFLLDDPFSPVDDHTGAHLFKFCWV 527
D+ + LSGGQ+QR+ +AR L + ++ LLD+P S +D +
Sbjct: 134 ---KDRL----HALGLSGGQQQRLCLARALANEPEVLLLDEPTSALDP-----------I 175
Query: 528 SSSK------------TVIYATH---QVEFLPAADLILVIKDGKITQAGK 562
S++K T++ TH Q + AD + +G++ + G
Sbjct: 176 STAKIEELIAELKKEYTIVIVTHNMQQAARV--ADRTAFLLNGRLVEFGP 223
|
Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. PstA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD). Length = 227 |
| >gnl|CDD|213230 cd03263, ABC_subfamily_A, ATP-binding cassette domain of the lipid transporters, subfamily A | Back alignment and domain information |
|---|
Score = 65.6 bits (161), Expect = 1e-11
Identities = 44/215 (20%), Positives = 78/215 (36%), Gaps = 43/215 (20%)
Query: 370 SSPNPTLRNINLKVFHGMRVAVCGTVGSGKSSCLSCILGGVPKESGIIRLCGTKAYVAQS 429
P + +++L V+ G + G G+GK++ L + G + SG + G +
Sbjct: 12 KGTKPAVDDLSLNVYKGEIFGLLGHNGAGKTTTLKMLTGELRPTSGTAYINGY--SIRTD 69
Query: 430 PWIQSGKI---------------EENILF--------GKEMDRERYERVLEACSLKKDLE 466
+ E++ F E+ E E +L L
Sbjct: 70 RKAARQSLGYCPQFDALFDELTVREHLRFYARLKGLPKSEIKEEV-ELLLRVLGLTDKAN 128
Query: 467 VLPFGDQTIIGERGINLSGGQKQRIQIARPLYQDADIFLLDDPFSPVDDHTGAHLFKFC- 525
LSGG K+++ +A L + LLD+P S +D + ++
Sbjct: 129 KRA-----------RTLSGGMKRKLSLAIALIGGPSVLLLDEPTSGLDPASRRAIWDLIL 177
Query: 526 WVSSSKTVIYATHQ---VEFLPAADLILVIKDGKI 557
V +++I TH E L D I ++ DGK+
Sbjct: 178 EVRKGRSIILTTHSMDEAEAL--CDRIAIMSDGKL 210
|
The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages. Length = 220 |
| >gnl|CDD|223487 COG0410, LivF, ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 65.6 bits (161), Expect = 1e-11
Identities = 48/155 (30%), Positives = 66/155 (42%), Gaps = 31/155 (20%)
Query: 376 LRNINLKVFHGMRVAVCGTVGSGKSSCLSCILGGVPKESGIIRLCGTK------------ 423
LR ++L+V G VA+ G G+GK++ L I+G V SG I G
Sbjct: 19 LRGVSLEVERGEIVALLGRNGAGKTTLLKTIMGLVRPRSGRIIFDGEDITGLPPHERARL 78
Query: 424 --AYVAQSPWI-QSGKIEENILFG------KEMDRERYERVLEACSLKKDLEVLPFGDQT 474
AYV + I +EEN+L G KE E V E K+
Sbjct: 79 GIAYVPEGRRIFPRLTVEENLLLGAYARRDKEAQERDLEEVYELFPRLKE---------- 128
Query: 475 IIGERGINLSGGQKQRIQIARPLYQDADIFLLDDP 509
+R LSGG++Q + IAR L + LLD+P
Sbjct: 129 RRNQRAGTLSGGEQQMLAIARALMSRPKLLLLDEP 163
|
Length = 237 |
| >gnl|CDD|213190 cd03223, ABCD_peroxisomal_ALDP, ATP-binding cassette domain of peroxisomal transporter, subfamily D | Back alignment and domain information |
|---|
Score = 64.1 bits (157), Expect = 1e-11
Identities = 44/166 (26%), Positives = 78/166 (46%), Gaps = 29/166 (17%)
Query: 946 GEVNIRHLQVRYAPNLPLVLRGRTGSGKSTLIQTLFRIVESTAGHILIDGKDISLIGLHD 1005
G V ++ L P L++ G +G+GKS+L + L + +G I + + L
Sbjct: 13 GRVLLKDLSFEIKPGDRLLITGPSGTGKSSLFRALAGLWPWGSGRIGMPEGEDLLF---- 68
Query: 1006 LRTRLSIIPQDPTMFEGTTRSNLDPLEEHADEQIWEALDKCQLGDEVRKKKGKLDSQGRV 1065
+PQ P + GT R EQ+ D G E + +L + R+
Sbjct: 69 -------LPQRPYLPLGTLR-----------EQLIYPWDDVLSGGE----QQRL-AFARL 105
Query: 1066 LLKKSKVLVLDEATASVDTATDNQIQQTLRQHFSDCTVVTIAHRIT 1111
LL K K + LDEAT+++D +++++ Q L++ TV+++ HR +
Sbjct: 106 LLHKPKFVFLDEATSALDEESEDRLYQLLKELG--ITVISVGHRPS 149
|
Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asymptomatic). Length = 166 |
| >gnl|CDD|182528 PRK10535, PRK10535, macrolide transporter ATP-binding /permease protein; Provisional | Back alignment and domain information |
|---|
Score = 68.6 bits (168), Expect = 1e-11
Identities = 69/247 (27%), Positives = 109/247 (44%), Gaps = 48/247 (19%)
Query: 376 LRNINLKVFHGMRVAVCGTVGSGKSSCLSCILGGVPK-ESGIIRLCGTKAYVAQSPWIQS 434
L+ I+L ++ G VA+ G GSGKS+ L ILG + K SG R+ G + +
Sbjct: 24 LKGISLDIYAGEMVAIVGASGSGKST-LMNILGCLDKPTSGTYRVAGQDVATLDADALAQ 82
Query: 435 GKIEENILFGKEMDR----------------------ERYERVLEACSLKKDLEVLPFGD 472
+ E FG R ER +R+L A L L+ L D
Sbjct: 83 LRREH---FGFIFQRYHLLSHLTAAQNVEVPAVYAGLERKQRLLRAQEL---LQRLGLED 136
Query: 473 QTIIGERGINLSGGQKQRIQIARPLYQDADIFLLDDPFSPVDDHTG----AHLFKFCWVS 528
+ + + LSGGQ+QR+ IAR L + L D+P +D H+G A L +
Sbjct: 137 R--VEYQPSQLSGGQQQRVSIARALMNGGQVILADEPTGALDSHSGEEVMAILHQLR--D 192
Query: 529 SSKTVIYATHQVEFLPAADLILVIKDGKITQ----------AGKYSDILNSGTDFMELVG 578
TVI TH + A+ ++ I+DG+I + AG ++N+ + + + V
Sbjct: 193 RGHTVIIVTHDPQVAAQAERVIEIRDGEIVRNPPAQEKVNVAGGTEPVVNTASGWRQFVS 252
Query: 579 AHKQALS 585
++AL+
Sbjct: 253 GFREALT 259
|
Length = 648 |
| >gnl|CDD|182716 PRK10771, thiQ, thiamine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 65.4 bits (160), Expect = 1e-11
Identities = 50/156 (32%), Positives = 75/156 (48%), Gaps = 34/156 (21%)
Query: 380 NLKVFHGMRVAVCGTVGSGKSSCLSCILGGVPKESGIIRLCG---TKAYVAQSPWIQSGK 436
+L V G RVA+ G G+GKS+ L+ I G + SG + L G T ++ P S
Sbjct: 19 DLTVERGERVAILGPSGAGKSTLLNLIAGFLTPASGSLTLNGQDHTTTPPSRRP--VSML 76
Query: 437 IEENILF---------------GKEMD---RERYERVLEACSLKKDLEVLPFGDQTIIGE 478
+EN LF G +++ RE+ + ++ L LP G+
Sbjct: 77 FQENNLFSHLTVAQNIGLGLNPGLKLNAAQREKLHAIARQMGIEDLLARLP-------GQ 129
Query: 479 RGINLSGGQKQRIQIARPLYQDADIFLLDDPFSPVD 514
LSGGQ+QR+ +AR L ++ I LLD+PFS +D
Sbjct: 130 ----LSGGQRQRVALARCLVREQPILLLDEPFSALD 161
|
Length = 232 |
| >gnl|CDD|183055 PRK11247, ssuB, aliphatic sulfonates transport ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 65.9 bits (161), Expect = 1e-11
Identities = 62/201 (30%), Positives = 89/201 (44%), Gaps = 35/201 (17%)
Query: 376 LRNINLKVFHGMRVAVCGTVGSGKSSCLSCILGGVPKESGIIRLCGTKAYVAQS------ 429
L ++L + G VAV G G GKS+ L +L G+ S L GT A +A++
Sbjct: 28 LNQLDLHIPAGQFVAVVGRSGCGKSTLLR-LLAGLETPSAGELLAGT-APLAEAREDTRL 85
Query: 430 --------PWIQSGKIEENILFGKEMD-RERYERVLEACSLKKDLEVLPFGDQTIIGERG 480
PW K+ +N+ G + R+ + L A L P
Sbjct: 86 MFQDARLLPW---KKVIDNVGLGLKGQWRDAALQALAAVGLADRANEWPAA--------- 133
Query: 481 INLSGGQKQRIQIARPLYQDADIFLLDDPFSPVDDHTG---AHLFKFCWVSSSKTVIYAT 537
LSGGQKQR+ +AR L + LLD+P +D T L + W TV+ T
Sbjct: 134 --LSGGQKQRVALARALIHRPGLLLLDEPLGALDALTRIEMQDLIESLWQQHGFTVLLVT 191
Query: 538 HQV-EFLPAADLILVIKDGKI 557
H V E + AD +L+I++GKI
Sbjct: 192 HDVSEAVAMADRVLLIEEGKI 212
|
Length = 257 |
| >gnl|CDD|213222 cd03255, ABC_MJ0796_LolCDE_FtsE, ATP-binding cassette domain of the transporters involved in export of lipoprotein and macrolide, and cell division protein | Back alignment and domain information |
|---|
Score = 64.8 bits (159), Expect = 2e-11
Identities = 47/171 (27%), Positives = 81/171 (47%), Gaps = 29/171 (16%)
Query: 963 LVLRGRTGSGKSTLIQTLFRIVESTAGHILIDGKDISLIGLHDL----RTRLSIIPQD-- 1016
+ + G +GSGKSTL+ L + T+G + +DG DIS + +L R + + Q
Sbjct: 33 VAIVGPSGSGKSTLLNILGGLDRPTSGEVRVDGTDISKLSEKELAAFRRRHIGFVFQSFN 92
Query: 1017 --PTMFEGTTRSNLD-PLE------EHADEQIWEALDKCQLGDEVRKKKGKLDS---QGR 1064
P + T N++ PL + E+ E L++ LGD + +L S Q R
Sbjct: 93 LLPDL---TALENVELPLLLAGVPKKERRERAEELLERVGLGDRLNHYPSEL-SGGQQQR 148
Query: 1065 V-----LLKKSKVLVLDEATASVDTATDNQIQQTLRQ--HFSDCTVVTIAH 1108
V L K+++ DE T ++D+ T ++ + LR+ + T+V + H
Sbjct: 149 VAIARALANDPKIILADEPTGNLDSETGKEVMELLRELNKEAGTTIVVVTH 199
|
This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of lipoproteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyzes the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane. Length = 218 |
| >gnl|CDD|213223 cd03256, ABC_PhnC_transporter, ATP-binding cassette domain of the binding protein-dependent phosphonate transport system | Back alignment and domain information |
|---|
Score = 64.9 bits (159), Expect = 2e-11
Identities = 48/161 (29%), Positives = 80/161 (49%), Gaps = 28/161 (17%)
Query: 963 LVLRGRTGSGKSTLIQTLFRIVESTAGHILIDGKDI-SLIG--LHDLRTRLSIIPQDPTM 1019
+ L G +G+GKSTL++ L +VE T+G +LIDG DI L G L LR ++ +I Q +
Sbjct: 30 VALIGPSGAGKSTLLRCLNGLVEPTSGSVLIDGTDINKLKGKALRQLRRQIGMIFQQFNL 89
Query: 1020 FE----------------GTTRSNLDPLEEHADEQIWEALDKCQLGDEVRKKKGKLDSQG 1063
E T RS + ++ AL++ L D+ ++ +L S G
Sbjct: 90 IERLSVLENVLSGRLGRRSTWRSLFGLFPKEEKQRALAALERVGLLDKAYQRADQL-SGG 148
Query: 1064 --------RVLLKKSKVLVLDEATASVDTATDNQIQQTLRQ 1096
R L+++ K+++ DE AS+D A+ Q+ L++
Sbjct: 149 QQQRVAIARALMQQPKLILADEPVASLDPASSRQVMDLLKR 189
|
Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only prokaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 241 |
| >gnl|CDD|224049 COG1124, DppF, ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 65.4 bits (160), Expect = 2e-11
Identities = 51/195 (26%), Positives = 94/195 (48%), Gaps = 25/195 (12%)
Query: 967 GRTGSGKSTLIQTLFRIVESTAGHILIDGKDISLIGLHDLRTR-LSIIPQDPTM----FE 1021
G +GSGKSTL + L + + ++G IL+DGK ++ R + ++ QDP
Sbjct: 40 GESGSGKSTLARLLAGLEKPSSGSILLDGKPLAPKKRAKAFYRPVQMVFQDPYSSLNPRR 99
Query: 1022 GTTRSNLDPLEEH----ADEQIWEALDKCQLGDEVRKKKGKLDSQG--------RVLLKK 1069
R +PL H + ++I E LD+ L ++ S G R L+ +
Sbjct: 100 TVGRILSEPLRPHGLSKSQQRIAELLDQVGLPPSFLDRRPHELSGGQRQRIAIARALIPE 159
Query: 1070 SKVLVLDEATASVDTATDNQIQ---QTLRQHFSDCTVVTIAHRITSVLD--SAMVLLLNH 1124
K+L+LDE T+++D + QI L++ T + I+H + ++++ + ++++
Sbjct: 160 PKLLILDEPTSALDVSVQAQILNLLLELKKER-GLTYLFISHDL-ALVEHMCDRIAVMDN 217
Query: 1125 GLIKEYDSPTKLLEN 1139
G I E PT+ L +
Sbjct: 218 GQIVE-IGPTEELLS 231
|
Length = 252 |
| >gnl|CDD|224042 COG1117, PstB, ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 65.3 bits (160), Expect = 2e-11
Identities = 51/207 (24%), Positives = 90/207 (43%), Gaps = 42/207 (20%)
Query: 967 GRTGSGKSTLIQTLFRIVE-----STAGHILIDGKDI--SLIGLHDLRTRLSIIPQDPTM 1019
G +G GKSTL++ L R+ + G +L+DGK+I + + +LR R+ ++ Q P
Sbjct: 40 GPSGCGKSTLLRCLNRMNDLIPGARVEGEVLLDGKNIYDPKVDVVELRRRVGMVFQKPNP 99
Query: 1020 FEGTTRSNL-------DPLEEHADEQIWEALDKCQLGDEVRKKKGKLDSQG--------- 1063
F + N+ ++ DE + +L K L DEV K +L
Sbjct: 100 FPMSIYDNVAYGLRLHGIKDKELDEIVESSLKKAALWDEV---KDRLHKSALGLSGGQQQ 156
Query: 1064 -----RVLLKKSKVLVLDEATASVDTATDNQIQQTLRQHFSDCTVVTIAH------RITS 1112
R L K +VL++DE T+++D + +I++ + + T+V + H R+
Sbjct: 157 RLCIARALAVKPEVLLMDEPTSALDPISTLKIEELITELKKKYTIVIVTHNMQQAARV-- 214
Query: 1113 VLDSAMVLLLNHGLIKEYDSPTKLLEN 1139
S G + E+ K+ N
Sbjct: 215 ---SDYTAFFYLGELVEFGPTDKIFTN 238
|
Length = 253 |
| >gnl|CDD|225438 COG2884, FtsE, Predicted ATPase involved in cell division [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
Score = 64.9 bits (159), Expect = 2e-11
Identities = 47/192 (24%), Positives = 82/192 (42%), Gaps = 26/192 (13%)
Query: 965 LRGRTGSGKSTLIQTLFRIVESTAGHILIDGKDISLIGLHD---LRTRLSIIPQDPTMFE 1021
L G +G+GKSTL++ ++ T G IL++G D+S + + LR ++ ++ QD +
Sbjct: 33 LTGPSGAGKSTLLKLIYGEERPTRGKILVNGHDLSRLKGREIPFLRRQIGVVFQDFRLL- 91
Query: 1022 GTTRSNLD----PLE------EHADEQIWEALDKCQLGDEVRKKKGKLDSQG-------- 1063
R+ + PL ++ E LD L + R +L S G
Sbjct: 92 -PDRTVYENVALPLRVIGKPPREIRRRVSEVLDLVGLKHKARALPSQL-SGGEQQRVAIA 149
Query: 1064 RVLLKKSKVLVLDEATASVDTATDNQIQQTL-RQHFSDCTVVTIAHRITSVLD-SAMVLL 1121
R ++ + VL+ DE T ++D +I + + TV+ H + V VL
Sbjct: 150 RAIVNQPAVLLADEPTGNLDPDLSWEIMRLFEEINRLGTTVLMATHDLELVNRMRHRVLA 209
Query: 1122 LNHGLIKEYDSP 1133
L G + +S
Sbjct: 210 LEDGRLVRDESR 221
|
Length = 223 |
| >gnl|CDD|185016 PRK15056, PRK15056, manganese/iron transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 65.7 bits (160), Expect = 2e-11
Identities = 56/191 (29%), Positives = 86/191 (45%), Gaps = 37/191 (19%)
Query: 376 LRNINLKVFHGMRVAVCGTVGSGKSSCLSCILGGVPKESGIIRLCGTK----------AY 425
LR+ + V G A+ G GSGKS+ ++G V SG I + G AY
Sbjct: 23 LRDASFTVPGGSIAALVGVNGSGKSTLFKALMGFVRLASGKISILGQPTRQALQKNLVAY 82
Query: 426 VAQSP---WIQSGKIEENILFG-----------KEMDRERYERVLEACSLKKDLEVLPFG 471
V QS W +E+ ++ G K+ DR+ L ++++ F
Sbjct: 83 VPQSEEVDWSFPVLVEDVVMMGRYGHMGWLRRAKKRDRQIVTAALAR------VDMVEFR 136
Query: 472 DQTIIGERGINLSGGQKQRIQIARPLYQDADIFLLDDPFSPVDDHTGAHLFKFC--WVSS 529
+ I GE LSGGQK+R+ +AR + Q + LLD+PF+ VD T A +
Sbjct: 137 HRQI-GE----LSGGQKKRVFLARAIAQQGQVILLDEPFTGVDVKTEARIISLLRELRDE 191
Query: 530 SKTVIYATHQV 540
KT++ +TH +
Sbjct: 192 GKTMLVSTHNL 202
|
Length = 272 |
| >gnl|CDD|236554 PRK09536, btuD, corrinoid ABC transporter ATPase; Reviewed | Back alignment and domain information |
|---|
Score = 67.2 bits (164), Expect = 2e-11
Identities = 58/228 (25%), Positives = 97/228 (42%), Gaps = 43/228 (18%)
Query: 374 PTLRNINLKVFHGMRVAVCGTVGSGKSSCLSCILGGVPKESGIIRLCGTKAY-------- 425
L ++L V G V + G G+GK++ L I G + +G + + G
Sbjct: 17 TVLDGVDLSVREGSLVGLVGPNGAGKTTLLRAINGTLTPTAGTVLVAGDDVEALSARAAS 76
Query: 426 --VAQSPW-------------IQSGKIEENILFGK--EMDRERYERVLEACSLKKDLEVL 468
VA P ++ G+ F E DR ER +E V
Sbjct: 77 RRVASVPQDTSLSFEFDVRQVVEMGRTPHRSRFDTWTETDRAAVERAMER------TGVA 130
Query: 469 PFGDQTIIGERGINLSGGQKQRIQIARPLYQDADIFLLDDPFSPVDDHTGAHLFKFC--W 526
F D+ + +LSGG++QR+ +AR L Q + LLD+P + +D + +
Sbjct: 131 QFADRPVT-----SLSGGERQRVLLARALAQATPVLLLDEPTASLDINHQVRTLELVRRL 185
Query: 527 VSSSKTVIYATHQVEFLPAA---DLILVIKDGKITQAGKYSDILNSGT 571
V KT + A H ++ AA D ++++ DG++ AG +D+L + T
Sbjct: 186 VDDGKTAVAAIHDLDL--AARYCDELVLLADGRVRAAGPPADVLTADT 231
|
Length = 402 |
| >gnl|CDD|188394 TIGR03864, PQQ_ABC_ATP, ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system | Back alignment and domain information |
|---|
Score = 64.6 bits (158), Expect = 2e-11
Identities = 49/186 (26%), Positives = 79/186 (42%), Gaps = 26/186 (13%)
Query: 964 VLRGRTGSGKSTLIQTLFRIVESTAGHILIDGKDISLIGLHDLRTRLSIIPQDPTM-FEG 1022
L G G+GKSTL L R+ + G I + G D+ L RL ++ Q PT+ +
Sbjct: 31 ALLGPNGAGKSTLFSLLTRLYVAQEGQISVAGHDLRRAPRAALA-RLGVVFQQPTLDLDL 89
Query: 1023 TTRSNLDPLEEHAD----------EQIWEALDKCQLGDEVRKKKGKLDSQG--------R 1064
+ R N L HA +I E L + L + K +L + G R
Sbjct: 90 SVRQN---LRYHAALHGLSRAEARARIAELLARLGLAERADDKVREL-NGGHRRRVEIAR 145
Query: 1065 VLLKKSKVLVLDEATASVDTATDNQIQQTLRQHFSD--CTVVTIAHRITSVLDSAMVLLL 1122
LL + +L+LDE T +D A+ I +R D +V+ H + + +++L
Sbjct: 146 ALLHRPALLLLDEPTVGLDPASRAAITAHVRALARDQGLSVLWATHLVDEIEADDRLVVL 205
Query: 1123 NHGLIK 1128
+ G +
Sbjct: 206 HRGRVL 211
|
Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 236 |
| >gnl|CDD|224048 COG1123, COG1123, ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only] | Back alignment and domain information |
|---|
Score = 67.2 bits (165), Expect = 3e-11
Identities = 56/213 (26%), Positives = 95/213 (44%), Gaps = 49/213 (23%)
Query: 967 GRTGSGKSTLIQTLFRIVE----STAGHILIDGKDISLIGLHDLR----TRLSIIPQDPT 1018
G +GSGKSTL L ++ T+G +++DG+D+ + ++R R+++I QDP
Sbjct: 42 GESGSGKSTLALALMGLLPEGGRITSGEVILDGRDLLGLSEREMRKLRGKRIAMIFQDPM 101
Query: 1019 MFEGTTRSNLDPL------------------EEHADEQIWEALDKCQLGDEVRKKK--GK 1058
++L+P+ A ++ E L++ L D R+ + +
Sbjct: 102 -------TSLNPVMTIGDQIREALRLHGKGSRAEARKRAVELLEQVGLPDPERRDRYPHQ 154
Query: 1059 LDSQG---RV-----LLKKSKVLVLDEATASVDTATDNQIQQTLRQHFSD---CTVVTIA 1107
L S G RV L K K+L+ DE T ++D T QI L+ V+ I
Sbjct: 155 L-SGGMRQRVMIAMALALKPKLLIADEPTTALDVTTQAQILDLLKD-LQRELGMAVLFIT 212
Query: 1108 HRITSVLDSA-MVLLLNHGLIKEYDSPTKLLEN 1139
H + V + A V+++ G I E ++L N
Sbjct: 213 HDLGVVAELADRVVVMYKGEIVETGPTEEILSN 245
|
Length = 539 |
| >gnl|CDD|132027 TIGR02982, heterocyst_DevA, ABC exporter ATP-binding subunit, DevA family | Back alignment and domain information |
|---|
Score = 63.9 bits (156), Expect = 3e-11
Identities = 60/210 (28%), Positives = 91/210 (43%), Gaps = 39/210 (18%)
Query: 376 LRNINLKVFHGMRVAVCGTVGSGKSSCLSCILGGVPKESGIIRLCGTKAYVAQSPWIQS- 434
L +INL++ G V + G GSGK++ L+ I G + G +++ G + Y A +
Sbjct: 21 LFDINLEINPGEIVILTGPSGSGKTTLLTLIGGLRSVQEGSLKVLGQELYGASEKELVQL 80
Query: 435 ----GKI------------EENILFGKEMD--------RERYERVLEACSLKKDLEVLPF 470
G I +N+ E+ RER +LEA L L+ P
Sbjct: 81 RRNIGYIFQAHNLLGFLTARQNVQMALELQPNLSYQEARERARAMLEAVGLGDHLDYYPH 140
Query: 471 GDQTIIGERGINLSGGQKQRIQIARPLYQDADIFLLDDPFSPVDDHTG---AHLFKFCWV 527
NLSGGQKQR+ IAR L + L D+P + +D +G L +
Sbjct: 141 -----------NLSGGQKQRVAIARALVHRPKLVLADEPTAALDSKSGRDVVELMQKLAR 189
Query: 528 SSSKTVIYATHQVEFLPAADLILVIKDGKI 557
T++ TH L AD I+ ++DGK+
Sbjct: 190 EQGCTILIVTHDNRILDVADRIVHMEDGKL 219
|
Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The DevBCA proteins are thought export of either heterocyst-specific glycolipids or an enzyme essential for formation of the laminated layer found in heterocysts. Length = 220 |
| >gnl|CDD|226164 COG3638, COG3638, ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 64.6 bits (158), Expect = 4e-11
Identities = 44/172 (25%), Positives = 80/172 (46%), Gaps = 29/172 (16%)
Query: 964 VLRGRTGSGKSTLIQTLFRIVESTAGHILIDGKDIS-LIG--LHDLRTRLSIIPQDP--- 1017
+ G +G+GKSTL+++L +V+ T+G IL +G I+ L G L LR + +I Q
Sbjct: 34 AIIGPSGAGKSTLLRSLNGLVDPTSGEILFNGVQITKLKGKELRKLRRDIGMIFQQFNLV 93
Query: 1018 ---TMFE----------GTTRSNLDPLEEHADEQIWEALDKCQLGDEVRKKKGKLD--SQ 1062
++ E T RS + Q +AL++ + D+ ++ L Q
Sbjct: 94 PRLSVLENVLLGRLGYTSTWRSLFGLFSKEDKAQALDALERVGILDKAYQRASTLSGGQQ 153
Query: 1063 GRV-----LLKKSKVLVLDEATASVDTATDNQIQQTLR---QHFSDCTVVTI 1106
RV L+++ K+++ DE AS+D + ++ L+ Q +V +
Sbjct: 154 QRVAIARALVQQPKIILADEPVASLDPESAKKVMDILKDINQEDGITVIVNL 205
|
Length = 258 |
| >gnl|CDD|213267 cd03300, ABC_PotA_N, ATP-binding cassette domain of the polyamine transporter | Back alignment and domain information |
|---|
Score = 64.2 bits (157), Expect = 4e-11
Identities = 65/217 (29%), Positives = 91/217 (41%), Gaps = 36/217 (16%)
Query: 376 LRNINLKVFHGMRVAVCGTVGSGKSSCLSCILGGVPKESGIIRLCG-----TKAY----- 425
L ++L + G + G G GK++ L I G SG I L G +
Sbjct: 16 LDGVSLDIKEGEFFTLLGPSGCGKTTLLRLIAGFETPTSGEILLDGKDITNLPPHKRPVN 75
Query: 426 -VAQS----PWIQSGKIEENILFGKEMDR----ERYERVLEACSLKKDLEVLPFGDQTII 476
V Q+ P + + ENI FG + + E ERV EA L + LE
Sbjct: 76 TVFQNYALFPHLT---VFENIAFGLRLKKLPKAEIKERVAEALDLVQ-LEGY-------- 123
Query: 477 GERGIN-LSGGQKQRIQIARPLYQDADIFLLDDPFSPVDDHTGAHL---FKFCWVSSSKT 532
R + LSGGQ+QR+ IAR L + + LLD+P +D + K T
Sbjct: 124 ANRKPSQLSGGQQQRVAIARALVNEPKVLLLDEPLGALDLKLRKDMQLELKRLQKELGIT 183
Query: 533 VIYATH-QVEFLPAADLILVIKDGKITQAGKYSDILN 568
++ TH Q E L +D I V+ GKI Q G +I
Sbjct: 184 FVFVTHDQEEALTMSDRIAVMNKGKIQQIGTPEEIYE 220
|
PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D. PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 232 |
| >gnl|CDD|213185 cd03218, ABC_YhbG, ATP-binding cassette component of YhbG transport system | Back alignment and domain information |
|---|
Score = 64.1 bits (157), Expect = 4e-11
Identities = 48/161 (29%), Positives = 73/161 (45%), Gaps = 33/161 (20%)
Query: 376 LRNINLKVFHGMRVAVCGTVGSGKSSCLSCILGGVPKESGIIRLCG---TK--------- 423
+ ++L V G V + G G+GK++ I+G V +SG I L G TK
Sbjct: 16 VNGVSLSVKQGEIVGLLGPNGAGKTTTFYMIVGLVKPDSGKILLDGQDITKLPMHKRARL 75
Query: 424 --AYVAQSPWIQSG-KIEENIL-------FGKEMDRERYERVLEACSLKKDLEVLPFGDQ 473
Y+ Q I +EENIL K+ E+ E +LE F
Sbjct: 76 GIGYLPQEASIFRKLTVEENILAVLEIRGLSKKEREEKLEELLEE-----------FHIT 124
Query: 474 TIIGERGINLSGGQKQRIQIARPLYQDADIFLLDDPFSPVD 514
+ + +LSGG+++R++IAR L + LLD+PF+ VD
Sbjct: 125 HLRKSKASSLSGGERRRVEIARALATNPKFLLLDEPFAGVD 165
|
The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium. Length = 232 |
| >gnl|CDD|213266 cd03299, ABC_ModC_like, ATP-binding cassette domain similar to the molybdate transporter | Back alignment and domain information |
|---|
Score = 63.5 bits (155), Expect = 5e-11
Identities = 50/208 (24%), Positives = 98/208 (47%), Gaps = 25/208 (12%)
Query: 963 LVLRGRTGSGKSTLIQTLFRIVESTAGHILIDGKDISLIGLHDLRTRLSIIPQDPTMFEG 1022
V+ G TGSGKS L++T+ ++ +G IL++GKDI+ L + +S +PQ+ +F
Sbjct: 28 FVILGPTGSGKSVLLETIAGFIKPDSGKILLNGKDIT--NLPPEKRDISYVPQNYALFPH 85
Query: 1023 TT---------RSNLDPLEEHADEQIWEALDKCQLGDEVRKKKGKLDS--QGRV-----L 1066
T + +E + ++ E + + + +K L Q RV L
Sbjct: 86 MTVYKNIAYGLKKRKVDKKE-IERKVLEIAEMLGIDHLLNRKPETLSGGEQQRVAIARAL 144
Query: 1067 LKKSKVLVLDEATASVDTATDNQIQQTLR--QHFSDCTVVTIAHRITSVLDSA-MVLLLN 1123
+ K+L+LDE +++D T ++++ L+ + TV+ + H A V ++
Sbjct: 145 VVNPKILLLDEPFSALDVRTKEKLREELKKIRKEFGVTVLHVTHDFEEAWALADKVAIML 204
Query: 1124 HGLIKEYDSPTKLLENKSSSFAQLVAEY 1151
+G + + P ++ + + F VAE+
Sbjct: 205 NGKLIQVGKPEEVFKKPKNEF---VAEF 229
|
Archaeal protein closely related to ModC. ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 235 |
| >gnl|CDD|224058 COG1135, AbcC, ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 65.3 bits (160), Expect = 5e-11
Identities = 61/269 (22%), Positives = 108/269 (40%), Gaps = 35/269 (13%)
Query: 376 LRNINLKVFHGMRVAVCGTVGSGKSSCLSCILGGVPKESGIIRLCGTK------------ 423
L +++L++ G + G G+GKS+ L I SG + + G
Sbjct: 22 LDDVSLEIPKGEIFGIIGYSGAGKSTLLRLINLLERPTSGSVFVDGQDLTALSEAELRQL 81
Query: 424 ----AYVAQSPWIQSGK-IEENILFGKEMDR----ERYERVLEACSLKKDLEVLPFGDQT 474
+ Q + S + + EN+ F E+ E +RV E LE++ D+
Sbjct: 82 RQKIGMIFQHFNLLSSRTVFENVAFPLELAGVPKAEIKQRVAEL------LELVGLSDK- 134
Query: 475 IIGERGINLSGGQKQRIQIARPLYQDADIFLLDDPFSPVDDHTGAH---LFKFCWVSSSK 531
LSGGQKQR+ IAR L + I L D+ S +D T L K
Sbjct: 135 -ADRYPAQLSGGQKQRVAIARALANNPKILLCDEATSALDPETTQSILELLKDINRELGL 193
Query: 532 TVIYATHQVEFLPA-ADLILVIKDGKITQAGKYSDI-LNSGTDF-MELVGAHKQALSGLD 588
T++ TH++E + D + V+ G++ + G S++ N E +G + +
Sbjct: 194 TIVLITHEMEVVKRICDRVAVLDQGRLVEEGTVSEVFANPKHAITQEFIGETLEIDLPEE 253
Query: 589 SIDRGPVSERKSINKENDGTSTTNEIVNK 617
++R + + G S ++++
Sbjct: 254 LLERLESGDGPLLRLTFTGESADQPLLSE 282
|
Length = 339 |
| >gnl|CDD|188099 TIGR00972, 3a0107s01c2, phosphate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 64.2 bits (157), Expect = 5e-11
Identities = 58/235 (24%), Positives = 97/235 (41%), Gaps = 50/235 (21%)
Query: 950 IRHLQVRYAPNLPL-------------VLRGRTGSGKSTLIQTLFRIVE-----STAGHI 991
I +L + Y L L G +G GKSTL+++L R+ + G +
Sbjct: 4 IENLNLFYGEKEALKNINLDIPKNQVTALIGPSGCGKSTLLRSLNRMNDLVPGVRIEGKV 63
Query: 992 LIDGKDI--SLIGLHDLRTRLSIIPQDPTMFEGTTRSNLD-PLEEH-------ADEQIWE 1041
L DG+DI I + +LR R+ ++ Q P F + N+ H DE + E
Sbjct: 64 LFDGQDIYDKKIDVVELRRRVGMVFQKPNPFPMSIYDNIAYGPRLHGIKDKKELDEIVEE 123
Query: 1042 ALDKCQLGDEVRKKKGKLDSQG--------------RVLLKKSKVLVLDEATASVDTATD 1087
+L K L DEV K +L R L + +VL+LDE T+++D
Sbjct: 124 SLKKAALWDEV---KDRLHDSALGLSGGQQQRLCIARALAVEPEVLLLDEPTSALDPIAT 180
Query: 1088 NQIQQTLRQHFSDCTVVTIAHRI---TSVLDSAMVLLLNHGLIKEYDSPTKLLEN 1139
+I++ +++ T+V + H + + D G + EY ++ N
Sbjct: 181 GKIEELIQELKKKYTIVIVTHNMQQAARISDRTAFFYD--GELVEYGPTEQIFTN 233
|
This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters [Transport and binding proteins, Anions]. Length = 247 |
| >gnl|CDD|237420 PRK13537, PRK13537, nodulation ABC transporter NodI; Provisional | Back alignment and domain information |
|---|
Score = 64.8 bits (158), Expect = 5e-11
Identities = 72/261 (27%), Positives = 115/261 (44%), Gaps = 58/261 (22%)
Query: 378 NINLKVFHGMRVAVCGTVGSGKSSCLSCILGGVPKESGIIRLCG----TKAYVAQS---- 429
++ V G + G G+GK++ L +LG ++G I LCG ++A A+
Sbjct: 25 GLSFHVQRGECFGLLGPNGAGKTTTLRMLLGLTHPDAGSISLCGEPVPSRARHARQRVGV 84
Query: 430 -PWIQS----GKIEENIL-FGKEMD------RERYERVLEACSL--KKDLEVLPFGDQTI 475
P + + EN+L FG+ R +LE L K D +V
Sbjct: 85 VPQFDNLDPDFTVRENLLVFGRYFGLSAAAARALVPPLLEFAKLENKADAKV-------- 136
Query: 476 IGERGINLSGGQKQRIQIARPLYQDADIFLLDDPFSPVDDHTGAHLFKFCW------VSS 529
GE LSGG K+R+ +AR L D D+ +LD+P + +D HL W ++
Sbjct: 137 -GE----LSGGMKRRLTLARALVNDPDVLVLDEPTTGLDPQ-ARHLM---WERLRSLLAR 187
Query: 530 SKTVIYATHQVEFLPAA----DLILVIKDGKITQAGKYSDILNS--GTDFMELVGAHKQA 583
KT++ TH F+ A D + VI++G+ G ++ S G D +E+ G A
Sbjct: 188 GKTILLTTH---FMEEAERLCDRLCVIEEGRKIAEGAPHALIESEIGCDVIEIYGPDPVA 244
Query: 584 LSGLDSIDRGPVSERKSINKE 604
L + P++ER I+ E
Sbjct: 245 LRDELA----PLAERTEISGE 261
|
Length = 306 |
| >gnl|CDD|236523 PRK09452, potA, putrescine/spermidine ABC transporter ATPase protein; Reviewed | Back alignment and domain information |
|---|
Score = 65.4 bits (160), Expect = 5e-11
Identities = 62/223 (27%), Positives = 98/223 (43%), Gaps = 46/223 (20%)
Query: 373 NPTLRNINLKVFHGMRVAVCGTVGSGKSSCLSCILGGVPKESGIIRLCGTKAYVAQSP-- 430
+ N++L + +G + + G G GK++ L I G +SG I L G + P
Sbjct: 27 KEVISNLDLTINNGEFLTLLGPSGCGKTTVLRLIAGFETPDSGRIMLDGQD--ITHVPAE 84
Query: 431 ------WIQS------GKIEENILFGKEMDR----ERYERVLEACSLKKDLEVLPFGDQT 474
QS + EN+ FG M + E RV+EA + + LE F +
Sbjct: 85 NRHVNTVFQSYALFPHMTVFENVAFGLRMQKTPAAEITPRVMEALRMVQ-LE--EFAQR- 140
Query: 475 IIGERGINLSGGQKQRIQIARPLYQDADIFLLDDPFSPVDDHTGAHLFKFCWVSSSK--- 531
+ LSGGQ+QR+ IAR + + LLD+ S +D +K ++
Sbjct: 141 ----KPHQLSGGQQQRVAIARAVVNKPKVLLLDESLSALD-------YKLRKQMQNELKA 189
Query: 532 -------TVIYATH-QVEFLPAADLILVIKDGKITQAGKYSDI 566
T ++ TH Q E L +D I+V++DG+I Q G +I
Sbjct: 190 LQRKLGITFVFVTHDQEEALTMSDRIVVMRDGRIEQDGTPREI 232
|
Length = 375 |
| >gnl|CDD|234152 TIGR03265, PhnT2, putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 65.4 bits (160), Expect = 5e-11
Identities = 69/209 (33%), Positives = 94/209 (44%), Gaps = 34/209 (16%)
Query: 376 LRNINLKVFHGMRVAVCGTVGSGKSSCLSCILGGVPKESGIIRLCG---------TKAY- 425
L++I+L V G V + G G GK++ L I G + +G I G + Y
Sbjct: 20 LKDISLSVKKGEFVCLLGPSGCGKTTLLRIIAGLERQTAGTIYQGGRDITRLPPQKRDYG 79
Query: 426 -VAQS----PWIQSGKIEENI---LFGKEMDR-ERYERVLEACSLKKDLEVLPFGDQTII 476
V QS P + + +NI L + M R E ERV E DL LP ++
Sbjct: 80 IVFQSYALFP---NLTVADNIAYGLKNRGMGRAEVAERVAELL----DLVGLPGSERKYP 132
Query: 477 GERGINLSGGQKQRIQIARPLYQDADIFLLDDPFSPVDDHTGAHL---FKFCWVSSSKTV 533
G+ LSGGQ+QR+ +AR L + LLD+P S +D HL + T
Sbjct: 133 GQ----LSGGQQQRVALARALATSPGLLLLDEPLSALDARVREHLRTEIRQLQRRLGVTT 188
Query: 534 IYATH-QVEFLPAADLILVIKDGKITQAG 561
I TH Q E L AD I+V+ G I Q G
Sbjct: 189 IMVTHDQEEALSMADRIVVMNHGVIEQVG 217
|
This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely [Transport and binding proteins, Amino acids, peptides and amines]. Length = 353 |
| >gnl|CDD|213261 cd03294, ABC_Pro_Gly_Betaine, ATP-binding cassette domain of the osmoprotectant proline/glycine betaine uptake system | Back alignment and domain information |
|---|
Score = 63.8 bits (156), Expect = 7e-11
Identities = 59/218 (27%), Positives = 103/218 (47%), Gaps = 37/218 (16%)
Query: 963 LVLRGRTGSGKSTLIQTLFRIVESTAGHILIDGKDISLIGLHDL----RTRLSIIPQDPT 1018
V+ G +GSGKSTL++ + R++E T+G +LIDG+DI+ + +L R ++S++ Q
Sbjct: 53 FVIMGLSGSGKSTLLRCINRLIEPTSGKVLIDGQDIAAMSRKELRELRRKKISMVFQSFA 112
Query: 1019 MFEGTTRSNLD----PLE-EHADEQI-----WEALDKCQLGDEVRKKKGKLDS--QGRV- 1065
+ R+ L+ LE + EAL+ L K +L Q RV
Sbjct: 113 LL--PHRTVLENVAFGLEVQGVPRAEREERAAEALELVGLEGWEHKYPDELSGGMQQRVG 170
Query: 1066 ----LLKKSKVLVLDEATASVDTATDNQIQQTLR--QHFSDCTVVTIAHRITSVLDSAMV 1119
L +L++DEA +++D ++Q L Q T+V I H LD A+
Sbjct: 171 LARALAVDPDILLMDEAFSALDPLIRREMQDELLRLQAELQKTIVFITHD----LDEALR 226
Query: 1120 L-----LLNHGLIKEYDSPTKLLENKSSSFAQLVAEYT 1152
L ++ G + + +P ++L N ++ + V E+
Sbjct: 227 LGDRIAIMKDGRLVQVGTPEEILTNPANDY---VREFF 261
|
This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 269 |
| >gnl|CDD|131197 TIGR02142, modC_ABC, molybdenum ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 65.1 bits (159), Expect = 7e-11
Identities = 49/217 (22%), Positives = 87/217 (40%), Gaps = 52/217 (23%)
Query: 388 RVAVCGTVGSGKSSCLSCILGGVPKESGIIRLCGTKAYVAQSPWIQSGK----------- 436
A+ G GSGK++ + I +G+ R + + S K
Sbjct: 25 VTAIFGRSGSGKTTLIRLI-------AGLTRPDEGEIVLNGRTLFDSRKGIFLPPEKRRI 77
Query: 437 --------------IEENILFGK-----EMDRERYERVLEACSLKKDLEVLPFGDQTIIG 477
+ N+ +G R +ERV+E + L LP G
Sbjct: 78 GYVFQEARLFPHLSVRGNLRYGMKRARPSERRISFERVIELLGIGHLLGRLP-GR----- 131
Query: 478 ERGINLSGGQKQRIQIARPLYQDADIFLLDDPFSPVDDHTGAHLFKFCWVSSSKT---VI 534
LSGG+KQR+ I R L + L+D+P + +DD + + ++ ++
Sbjct: 132 -----LSGGEKQRVAIGRALLSSPRLLLMDEPLAALDDPRKYEILPYLERLHAEFGIPIL 186
Query: 535 YATHQV-EFLPAADLILVIKDGKITQAGKYSDILNSG 570
Y +H + E L AD ++V++DG++ AG +++ S
Sbjct: 187 YVSHSLQEVLRLADRVVVLEDGRVAAAGPIAEVWASP 223
|
This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter [Transport and binding proteins, Anions]. Length = 354 |
| >gnl|CDD|213191 cd03224, ABC_TM1139_LivF_branched, ATP-binding cassette domain of branched-chain amino acid transporter | Back alignment and domain information |
|---|
Score = 62.8 bits (154), Expect = 8e-11
Identities = 49/167 (29%), Positives = 70/167 (41%), Gaps = 41/167 (24%)
Query: 374 PTLRNINLKVFHGMRVAVCGTVGSGKSSCLSCILGGVPKESGIIRLCGTK---------- 423
L ++L V G VA+ G G+GK++ L I+G +P SG IR G
Sbjct: 14 QILFGVSLTVPEGEIVALLGRNGAGKTTLLKTIMGLLPPRSGSIRFDGRDITGLPPHERA 73
Query: 424 ----AYVAQSPWIQSG-KIEENILFG-----KEMDRERYERVLEACSLKKDLEVLPFGDQ 473
YV + I +EEN+L G + + R ERV E+ P
Sbjct: 74 RAGIGYVPEGRRIFPELTVEENLLLGAYARRRAKRKARLERV---------YELFP---- 120
Query: 474 TIIGER----GINLSGGQKQRIQIARPLYQDADIFLLDDPF---SPV 513
+ ER LSGG++Q + IAR L + LLD+P +P
Sbjct: 121 -RLKERRKQLAGTLSGGEQQMLAIARALMSRPKLLLLDEPSEGLAPK 166
|
LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. Length = 222 |
| >gnl|CDD|200134 TIGR01842, type_I_sec_PrtD, type I secretion system ABC transporter, PrtD family | Back alignment and domain information |
|---|
Score = 65.4 bits (160), Expect = 1e-10
Identities = 50/189 (26%), Positives = 82/189 (43%), Gaps = 22/189 (11%)
Query: 963 LVLRGRTGSGKSTLIQTLFRIVESTAGHILIDGKDISLIGLHDLRTRLSIIPQDPTMFEG 1022
L + G +GSGKSTL + + I T+G + +DG D+ + +PQD +F G
Sbjct: 347 LAIIGPSGSGKSTLARLIVGIWPPTSGSVRLDGADLKQWDRETFGKHIGYLPQDVELFPG 406
Query: 1023 TTRSNLDPLEEHAD-EQIWEALDKCQLGDEVRKKKGKLDSQ------------------G 1063
T N+ E+AD E+I EA + + + + D+
Sbjct: 407 TVAENIARFGENADPEKIIEAAKLAGVHELILRLPDGYDTVIGPGGATLSGGQRQRIALA 466
Query: 1064 RVLLKKSKVLVLDEATASVDTATDNQIQQTLRQ-HFSDCTVVTIAHRITSVLDSA-MVLL 1121
R L K++VLDE +++D + + ++ TVV I HR S+L +L+
Sbjct: 467 RALYGDPKLVVLDEPNSNLDEEGEQALANAIKALKARGITVVVITHRP-SLLGCVDKILV 525
Query: 1122 LNHGLIKEY 1130
L G I +
Sbjct: 526 LQDGRIARF 534
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion [Protein fate, Protein and peptide secretion and trafficking]. Length = 544 |
| >gnl|CDD|237452 PRK13632, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 63.5 bits (155), Expect = 1e-10
Identities = 50/229 (21%), Positives = 99/229 (43%), Gaps = 39/229 (17%)
Query: 948 VNIRHLQVRYAPNLPLVLR---------------GRTGSGKSTLIQTLFRIVESTAGHIL 992
+ + ++ Y + L+ G GSGKST+ + L +++ +G I
Sbjct: 8 IKVENVSFSYPNSENNALKNVSFEINEGEYVAILGHNGSGKSTISKILTGLLKPQSGEIK 67
Query: 993 IDGKDISLIGLHDLRTRLSIIPQDP-TMFEGTT----------RSNLDPLEEHADEQIWE 1041
IDG IS L ++R ++ II Q+P F G T + P + + I +
Sbjct: 68 IDGITISKENLKEIRKKIGIIFQNPDNQFIGATVEDDIAFGLENKKVPP--KKMKDIIDD 125
Query: 1042 ALDKCQLGDEVRKKKGKLDSQGR--------VLLKKSKVLVLDEATASVDTATDNQIQQT 1093
K + D + K+ L S G+ VL ++++ DE+T+ +D +I++
Sbjct: 126 LAKKVGMEDYLDKEPQNL-SGGQKQRVAIASVLALNPEIIIFDESTSMLDPKGKREIKKI 184
Query: 1094 LR--QHFSDCTVVTIAHRITSVLDSAMVLLLNHGLIKEYDSPTKLLENK 1140
+ + T+++I H + + + V++ + G + P ++L NK
Sbjct: 185 MVDLRKTRKKTLISITHDMDEAILADKVIVFSEGKLIAQGKPKEILNNK 233
|
Length = 271 |
| >gnl|CDD|213197 cd03230, ABC_DR_subfamily_A, ATP-binding cassette domain of the drug resistance transporter and related proteins, subfamily A | Back alignment and domain information |
|---|
Score = 61.3 bits (150), Expect = 1e-10
Identities = 42/164 (25%), Positives = 79/164 (48%), Gaps = 26/164 (15%)
Query: 967 GRTGSGKSTLIQTLFRIVESTAGHILIDGKDISLIGLHDLRTRLSIIPQDPTMFEG-TTR 1025
G G+GK+TLI+ + +++ +G I + GKDI +++ R+ +P++P+++E T R
Sbjct: 33 GPNGAGKTTLIKIILGLLKPDSGEIKVLGKDIKKEP-EEVKRRIGYLPEEPSLYENLTVR 91
Query: 1026 SNLDPLEEHADEQIWEALDKCQLGDEVRKKKGKLDSQGRVLLKKSKVLVLDEATASVDTA 1085
NL K G K++ L + LL ++L+LDE T+ +D
Sbjct: 92 ENL----------------KLSGGM---KQRLAL---AQALLHDPELLILDEPTSGLDPE 129
Query: 1086 TDNQIQQTLRQH-FSDCTVVTIAHRITSVLDSA-MVLLLNHGLI 1127
+ + + LR+ T++ +H + V +LN+G I
Sbjct: 130 SRREFWELLRELKKEGKTILLSSHILEEAERLCDRVAILNNGRI 173
|
This family of ATP-binding proteins belongs to a multi-subunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryotic systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 173 |
| >gnl|CDD|226970 COG4619, COG4619, ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 62.2 bits (151), Expect = 1e-10
Identities = 42/159 (26%), Positives = 74/159 (46%), Gaps = 15/159 (9%)
Query: 965 LRGRTGSGKSTLIQTLFRIVESTAGHILIDGKDISLIGLHDLRTRLSIIPQDPTMFEGTT 1024
+ G +G GKSTL++ + ++ T+G +L +G+D+S + R ++S Q P +F T
Sbjct: 34 ITGPSGCGKSTLLKIVASLISPTSGTLLFEGEDVSTLKPEAYRQQVSYCAQTPALFGDTV 93
Query: 1025 RSNLD-PLEEHADEQIWEA----LDKCQLGDEVRKKKGKLDSQG--------RVLLKKSK 1071
NL P + A L + L D + K S G R L K
Sbjct: 94 EDNLIFPWQIRNRRPDRAAALDLLARFALPDSILTKNITELSGGEKQRIALIRNLQFMPK 153
Query: 1072 VLVLDEATASVDTATDNQIQQTLRQHFS--DCTVVTIAH 1108
+L+LDE T+++D + I++ + ++ + V+ I H
Sbjct: 154 ILLLDEITSALDESNKRNIEEMIHRYVREQNVAVLWITH 192
|
Length = 223 |
| >gnl|CDD|130234 TIGR01166, cbiO, cobalt transport protein ATP-binding subunit | Back alignment and domain information |
|---|
Score = 61.7 bits (150), Expect = 1e-10
Identities = 48/152 (31%), Positives = 71/152 (46%), Gaps = 20/152 (13%)
Query: 963 LVLRGRTGSGKSTLIQTLFRIVESTAGHILIDGK--DISLIGLHDLRTRLSIIPQDP--T 1018
L L G G+GKSTL+ L ++ +G +LIDG+ D S GL + R R+ ++ QDP
Sbjct: 21 LALLGANGAGKSTLLLHLNGLLRPQSGAVLIDGEPLDYSRKGLLERRQRVGLVFQDPDDQ 80
Query: 1019 MFEGTTRS-------NLDPLEEHADEQIWEALDKCQLGDEVRKKKGKLDSQG---RV--- 1065
+F NL E + ++ EAL +R++ S G RV
Sbjct: 81 LFAADVDQDVAFGPLNLGLSEAEVERRVREALTAVGA-SGLRERPTHCLSGGEKKRVAIA 139
Query: 1066 --LLKKSKVLVLDEATASVDTATDNQIQQTLR 1095
+ + VL+LDE TA +D A Q+ LR
Sbjct: 140 GAVAMRPDVLLLDEPTAGLDPAGREQMLAILR 171
|
This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux [Transport and binding proteins, Cations and iron carrying compounds]. Length = 190 |
| >gnl|CDD|130234 TIGR01166, cbiO, cobalt transport protein ATP-binding subunit | Back alignment and domain information |
|---|
Score = 61.3 bits (149), Expect = 2e-10
Identities = 46/192 (23%), Positives = 81/192 (42%), Gaps = 37/192 (19%)
Query: 376 LRNINLKVFHGMRVAVCGTVGSGKSSCLSCILGGVPKESGIIRLCGTK------------ 423
L+ +N G +A+ G G+GKS+ L + G + +SG + + G
Sbjct: 8 LKGLNFAAERGEVLALLGANGAGKSTLLLHLNGLLRPQSGAVLIDGEPLDYSRKGLLERR 67
Query: 424 ---AYVAQSPWIQ--SGKIEENILFGKE----MDRERYERVLEACSLKKDLEVLPFGDQT 474
V Q P Q + +++++ FG + E RV EA + + ++
Sbjct: 68 QRVGLVFQDPDDQLFAADVDQDVAFGPLNLGLSEAEVERRVREALTA---VGASGLRERP 124
Query: 475 IIGERGINLSGGQKQRIQIARPLYQDADIFLLDDPFSPVDDHTGAH-----LFKFCWVSS 529
LSGG+K+R+ IA + D+ LLD+P + +D G L + +
Sbjct: 125 TH-----CLSGGEKKRVAIAGAVAMRPDVLLLDEPTAGLDP-AGREQMLAILRRL--RAE 176
Query: 530 SKTVIYATHQVE 541
TV+ +TH V+
Sbjct: 177 GMTVVISTHDVD 188
|
This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux [Transport and binding proteins, Cations and iron carrying compounds]. Length = 190 |
| >gnl|CDD|213225 cd03258, ABC_MetN_methionine_transporter, ATP-binding cassette domain of methionine transporter | Back alignment and domain information |
|---|
Score = 62.2 bits (152), Expect = 2e-10
Identities = 57/196 (29%), Positives = 91/196 (46%), Gaps = 25/196 (12%)
Query: 967 GRTGSGKSTLIQTLFRIVESTAGHILIDGKDISLI---GLHDLRTRLSIIPQDPTMFEG- 1022
GR+G+GKSTLI+ + + T+G +L+DG D++L+ L R R+ +I Q +
Sbjct: 38 GRSGAGKSTLIRCINGLERPTSGSVLVDGTDLTLLSGKELRKARRRIGMIFQHFNLLSSR 97
Query: 1023 TTRSNLD-PLE------EHADEQIWEALDKCQLGDEVRKKKGKLDSQG--------RVLL 1067
T N+ PLE +E++ E L+ L D+ +L S G R L
Sbjct: 98 TVFENVALPLEIAGVPKAEIEERVLELLELVGLEDKADAYPAQL-SGGQKQRVGIARALA 156
Query: 1068 KKSKVLVLDEATASVDTATDNQIQQTLR---QHFSDCTVVTIAHRITSVLDSA-MVLLLN 1123
KVL+ DEAT+++D T I LR + T+V I H + V V ++
Sbjct: 157 NNPKVLLCDEATSALDPETTQSILALLRDINREL-GLTIVLITHEMEVVKRICDRVAVME 215
Query: 1124 HGLIKEYDSPTKLLEN 1139
G + E + ++ N
Sbjct: 216 KGEVVEEGTVEEVFAN 231
|
MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 233 |
| >gnl|CDD|233305 TIGR01189, ccmA, heme ABC exporter, ATP-binding protein CcmA | Back alignment and domain information |
|---|
Score = 60.8 bits (148), Expect = 2e-10
Identities = 33/145 (22%), Positives = 57/145 (39%), Gaps = 10/145 (6%)
Query: 963 LVLRGRTGSGKSTLIQTLFRIVESTAGHILIDGKDISLIGLHDLRTRLSIIPQDPTMFEG 1022
L + G G GK+TL++ L ++ +G + +G ++ R L + E
Sbjct: 29 LQVTGPNGIGKTTLLRILAGLLRPDSGEVRWNGTALAEQRDEPHRNILYLGHLPGLKPEL 88
Query: 1023 TTRSNLDPLEE-HADEQ--IWEALDKCQLGDEVRKKKGKLD-------SQGRVLLKKSKV 1072
+ NL H Q I +AL L +L + R+ L ++ +
Sbjct: 89 SALENLHFWAAIHGGAQRTIEDALAAVGLTGFEDLPAAQLSAGQQRRLALARLWLSRAPL 148
Query: 1073 LVLDEATASVDTATDNQIQQTLRQH 1097
+LDE T ++D A + LR H
Sbjct: 149 WILDEPTTALDKAGVALLAGLLRAH 173
|
This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c [Protein fate, Protein and peptide secretion and trafficking, Transport and binding proteins, Other]. Length = 198 |
| >gnl|CDD|213229 cd03262, ABC_HisP_GlnQ, ATP-binding cassette domain of the histidine and glutamine transporters | Back alignment and domain information |
|---|
Score = 61.0 bits (149), Expect = 3e-10
Identities = 43/186 (23%), Positives = 79/186 (42%), Gaps = 43/186 (23%)
Query: 948 VNIRHLQVRYAPNLPL-------------VLRGRTGSGKSTLIQTLFRIVESTAGHILID 994
+ I++L + L V+ G +GSGKSTL++ + + E +G I+ID
Sbjct: 1 IEIKNLHKSFGDFHVLKGIDLTVKKGEVVVIIGPSGSGKSTLLRCINLLEEPDSGTIIID 60
Query: 995 GKDI--SLIGLHDLRTRLSIIPQDPTMFEGTTRSNLDPLE--------------EHADEQ 1038
G + +++LR ++ ++ Q +F +L LE A+E+
Sbjct: 61 GLKLTDDKKNINELRQKVGMVFQQFNLFP-----HLTVLENITLAPIKVKGMSKAEAEER 115
Query: 1039 IWEALDKCQLGDEVRKKKGKLDSQG--------RVLLKKSKVLVLDEATASVDTATDNQI 1090
E L+K L D+ +L S G R L KV++ DE T+++D ++
Sbjct: 116 ALELLEKVGLADKADAYPAQL-SGGQQQRVAIARALAMNPKVMLFDEPTSALDPELVGEV 174
Query: 1091 QQTLRQ 1096
++
Sbjct: 175 LDVMKD 180
|
HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, respectively. Histidine permease is a multi-subunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryotic extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQMP system of S. typhimurium, where HisJ is the extracellular solute binding proteins and HisP is the ABC protein. Length = 213 |
| >gnl|CDD|226359 COG3839, MalK, ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Score = 62.3 bits (152), Expect = 4e-10
Identities = 52/214 (24%), Positives = 101/214 (47%), Gaps = 29/214 (13%)
Query: 963 LVLRGRTGSGKSTLIQTLFRIVESTAGHILIDGKDISLIGLHDLRTRLSIIPQD----PT 1018
+VL G +G GKSTL++ + + E T+G ILIDG+D++ L + ++++ Q+ P
Sbjct: 32 VVLLGPSGCGKSTLLRMIAGLEEPTSGEILIDGRDVT--DLPPEKRGIAMVFQNYALYPH 89
Query: 1019 MFEGTTRSNLD-PL------EEHADEQIWEALDKCQLGDEVRKKKGKLD-------SQGR 1064
M T N+ L + D+++ E L + +K +L + R
Sbjct: 90 M---TVYENIAFGLKLRGVPKAEIDKRVKEVAKLLGLEHLLNRKPLQLSGGQRQRVALAR 146
Query: 1065 VLLKKSKVLVLDEATASVDTATDNQIQQTLR--QHFSDCTVVTIAHRITSVLDSA-MVLL 1121
L++K KV +LDE +++D ++ ++ T + + H + A +++
Sbjct: 147 ALVRKPKVFLLDEPLSNLDAKLRVLMRSEIKKLHERLGTTTIYVTHDQVEAMTLADRIVV 206
Query: 1122 LNHGLIKEYDSPTKLLENKSSSFAQLVAEYTSSS 1155
+N G I++ +P +L E ++ F VA + S
Sbjct: 207 MNDGRIQQVGTPLELYERPANLF---VAGFIGSP 237
|
Length = 338 |
| >gnl|CDD|213226 cd03259, ABC_Carb_Solutes_like, ATP-binding cassette domain of the carbohydrate and solute transporters-like | Back alignment and domain information |
|---|
Score = 60.6 bits (148), Expect = 4e-10
Identities = 44/186 (23%), Positives = 85/186 (45%), Gaps = 26/186 (13%)
Query: 963 LVLRGRTGSGKSTLIQTLFRIVESTAGHILIDGKDISLIGLHDLRTRLSIIPQDPTMFEG 1022
L L G +G GK+TL++ + + +G ILIDG+D++ + R + ++ QD +F
Sbjct: 29 LALLGPSGCGKTTLLRLIAGLERPDSGEILIDGRDVTGVPPE--RRNIGMVFQDYALFPH 86
Query: 1023 -TTRSNLD-PL------EEHADEQIWEALDKCQLGDEVRKKKGKLDSQG--------RVL 1066
T N+ L + ++ E L+ L + + +L S G R L
Sbjct: 87 LTVAENIAFGLKLRGVPKAEIRARVRELLELVGLEGLLNRYPHEL-SGGQQQRVALARAL 145
Query: 1067 LKKSKVLVLDEATASVDTATDNQIQQTLR--QHFSDCTVVTIAHRITSVLDSAM---VLL 1121
++ +L+LDE +++D ++++ L+ Q T + + H L A+ + +
Sbjct: 146 AREPSLLLLDEPLSALDAKLREELREELKELQRELGITTIYVTHDQEEAL--ALADRIAV 203
Query: 1122 LNHGLI 1127
+N G I
Sbjct: 204 MNEGRI 209
|
This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 213 |
| >gnl|CDD|213225 cd03258, ABC_MetN_methionine_transporter, ATP-binding cassette domain of methionine transporter | Back alignment and domain information |
|---|
Score = 61.1 bits (149), Expect = 4e-10
Identities = 56/220 (25%), Positives = 93/220 (42%), Gaps = 33/220 (15%)
Query: 374 PTLRNINLKVFHGMRVAVCGTVGSGKSSCLSCILGGVPKESGIIRLCGT-------KAYV 426
L++++L V G + G G+GKS+ + CI G SG + + GT K
Sbjct: 19 TALKDVSLSVPKGEIFGIIGRSGAGKSTLIRCINGLERPTSGSVLVDGTDLTLLSGKELR 78
Query: 427 AQSPWI----------QSGKIEENILFGKEMDR----ERYERVLEACSLKKDLEVLPFGD 472
I S + EN+ E+ E ERVLE LE++ D
Sbjct: 79 KARRRIGMIFQHFNLLSSRTVFENVALPLEIAGVPKAEIEERVLEL------LELVGLED 132
Query: 473 QTIIGERGINLSGGQKQRIQIARPLYQDADIFLLDDPFSPVDDHTGAHLFKFCWVSSSK- 531
+ LSGGQKQR+ IAR L + + L D+ S +D T + + +
Sbjct: 133 K--ADAYPAQLSGGQKQRVGIARALANNPKVLLCDEATSALDPETTQSILALLRDINREL 190
Query: 532 --TVIYATHQVEFLPA-ADLILVIKDGKITQAGKYSDILN 568
T++ TH++E + D + V++ G++ + G ++
Sbjct: 191 GLTIVLITHEMEVVKRICDRVAVMEKGEVVEEGTVEEVFA 230
|
MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 233 |
| >gnl|CDD|184200 PRK13640, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 61.7 bits (150), Expect = 4e-10
Identities = 65/240 (27%), Positives = 106/240 (44%), Gaps = 34/240 (14%)
Query: 354 SDTAIEIIDGSFSWDFSSPNPTLRNINLKVFHGMRVAVCGTVGSGKSSCLSCILGGV--P 411
D +E SF++ S P L +I+ + G A+ G GSGKS+ +S ++ G+ P
Sbjct: 2 KDNIVEFKHVSFTYP-DSKKPALNDISFSIPRGSWTALIGHNGSGKST-ISKLINGLLLP 59
Query: 412 KES--GIIRLCGTK-------------AYVAQSPWIQ--SGKIEENILFGKE---MDRER 451
++ I + G V Q+P Q + +++ FG E + R
Sbjct: 60 DDNPNSKITVDGITLTAKTVWDIREKVGIVFQNPDNQFVGATVGDDVAFGLENRAVPRPE 119
Query: 452 YERVLEACSLKKDLEVLPFGDQTIIGERGINLSGGQKQRIQIARPLYQDADIFLLDDPFS 511
+++ + D+ +L + D NLSGGQKQR+ IA L + I +LD+ S
Sbjct: 120 MIKIVR--DVLADVGMLDYIDS-----EPANLSGGQKQRVAIAGILAVEPKIIILDESTS 172
Query: 512 PVDDHTGAHLFKFCWVSSSK---TVIYATHQVEFLPAADLILVIKDGKITQAGKYSDILN 568
+D + K K TVI TH ++ AD +LV+ DGK+ G +I +
Sbjct: 173 MLDPAGKEQILKLIRKLKKKNNLTVISITHDIDEANMADQVLVLDDGKLLAQGSPVEIFS 232
|
Length = 282 |
| >gnl|CDD|237451 PRK13631, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 62.2 bits (151), Expect = 4e-10
Identities = 47/157 (29%), Positives = 71/157 (45%), Gaps = 24/157 (15%)
Query: 418 RLCGTKAYVAQSPWIQSGK--IEENILFG-------KEMDRERYERVLEACSLKKD-LEV 467
L + V Q P Q K IE++I+FG K ++ + L L LE
Sbjct: 113 ELRRRVSMVFQFPEYQLFKDTIEKDIMFGPVALGVKKSEAKKLAKFYLNKMGLDDSYLER 172
Query: 468 LPFGDQTIIGERGINLSGGQKQRIQIARPLYQDADIFLLDDPFSPVDDHTGAHLFKFCWV 527
PFG LSGGQK+R+ IA L +I + D+P + +D + +
Sbjct: 173 SPFG-----------LSGGQKRRVAIAGILAIQPEILIFDEPTAGLDPKGEHEMMQLILD 221
Query: 528 S--SSKTVIYATHQVE-FLPAADLILVIKDGKITQAG 561
+ ++KTV TH +E L AD ++V+ GKI + G
Sbjct: 222 AKANNKTVFVITHTMEHVLEVADEVIVMDKGKILKTG 258
|
Length = 320 |
| >gnl|CDD|213231 cd03264, ABC_drug_resistance_like, ABC-type multidrug transport system, ATPase component | Back alignment and domain information |
|---|
Score = 59.9 bits (146), Expect = 6e-10
Identities = 49/210 (23%), Positives = 86/210 (40%), Gaps = 38/210 (18%)
Query: 376 LRNINLKVFHGMRVAVCGTVGSGKSSCLSCILGGVPKESGIIRLCGTKA----------- 424
L ++L + GM + G G+GK++ + + P SG IR+ G
Sbjct: 16 LDGVSLTLGPGM-YGLLGPNGAGKTTLMRILATLTPPSSGTIRIDGQDVLKQPQKLRRRI 74
Query: 425 -YVAQSP-WIQSGKIEE---NILFGKEMD----RERYERVLEACSLKKDLEVLPFGDQTI 475
Y+ Q + + E I + K + + R + VLE +L + I
Sbjct: 75 GYLPQEFGVYPNFTVREFLDYIAWLKGIPSKEVKARVDEVLELVNL------GDRAKKKI 128
Query: 476 IGERGINLSGGQKQRIQIARPLYQDADIFLLDDP---FSPVDDHTGAHLFKFCWVSSSKT 532
LSGG ++R+ IA+ L D I ++D+P P + +L + +
Sbjct: 129 GS-----LSGGMRRRVGIAQALVGDPSILIVDEPTAGLDPEERIRFRNLLS--ELGEDRI 181
Query: 533 VIYATHQVEFLPA-ADLILVIKDGKITQAG 561
VI +TH VE + + + + V+ GK+ G
Sbjct: 182 VILSTHIVEDVESLCNQVAVLNKGKLVFEG 211
|
The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 211 |
| >gnl|CDD|162242 TIGR01187, potA, spermidine/putrescine ABC transporter ATP-binding subunit | Back alignment and domain information |
|---|
Score = 61.7 bits (150), Expect = 6e-10
Identities = 52/212 (24%), Positives = 97/212 (45%), Gaps = 27/212 (12%)
Query: 965 LRGRTGSGKSTLIQTLFRIVESTAGHILIDGKDISLIGLHDLRTRLSIIPQDPTMFEGTT 1024
L G +G GK+TL++ L + +G I++DG+D++ + H ++++ Q +F T
Sbjct: 1 LLGPSGCGKTTLLRLLAGFEQPDSGSIMLDGEDVTNVPPH--LRHINMVFQSYALFPHMT 58
Query: 1025 ---------RSNLDPLEEHADEQIWEALDKCQLGDEVRKKKGKLDSQG--------RVLL 1067
+ P E ++ EAL QL + +K +L S G R L+
Sbjct: 59 VEENVAFGLKMRKVPRAE-IKPRVLEALRLVQLEEFADRKPHQL-SGGQQQRVALARALV 116
Query: 1068 KKSKVLVLDEATASVDTATDNQIQQTLR--QHFSDCTVVTIAHRITSVLD-SAMVLLLNH 1124
K K+L+LDE +++D +Q+Q L+ Q T V + H + S + ++
Sbjct: 117 FKPKILLLDEPLSALDKKLRDQMQLELKTIQEQLGITFVFVTHDQEEAMTMSDRIAIMRK 176
Query: 1125 GLIKEYDSPTKLLENKSSSFAQLVAEYTSSSS 1156
G I + +P ++ E ++ F VA + +
Sbjct: 177 GKIAQIGTPEEIYEEPANLF---VARFIGEIN 205
|
This model describes spermidine/putrescine ABC transporter, ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Polyamines like spermidine and putrescine play vital role in cell proliferation, differentiation, and ion homeostasis. The concentration of polyamines within the cell are regulated by biosynthesis, degradation and transport (uptake and efflux included) [Transport and binding proteins, Amino acids, peptides and amines]. Length = 325 |
| >gnl|CDD|131721 TIGR02673, FtsE, cell division ATP-binding protein FtsE | Back alignment and domain information |
|---|
Score = 60.0 bits (146), Expect = 6e-10
Identities = 41/194 (21%), Positives = 71/194 (36%), Gaps = 41/194 (21%)
Query: 376 LRNINLKVFHGMRVAVCGTVGSGKSSCLSCILGGVPKESGIIRLCGTKAYVAQSPWI--- 432
L +++L + G + + G G+GK++ L + G + G +R+ G + +
Sbjct: 18 LHDVSLHIRKGEFLFLTGPSGAGKTTLLKLLYGALTPSRGQVRIAGEDVNRLRGRQLPLL 77
Query: 433 --------QSGKI------EENILFGKEMD-------RERYERVLEACSLKKDLEVLPFG 471
Q ++ EN+ E+ + R L L+ + P
Sbjct: 78 RRRIGVVFQDFRLLPDRTVYENVALPLEVRGKKEREIQRRVGAALRQVGLEHKADAFP-- 135
Query: 472 DQTIIGERGINLSGGQKQRIQIARPLYQDADIFLLDDPFSPVDDHTGA---HLFK-FCWV 527
LSGG++QR+ IAR + + L D+P +D L K
Sbjct: 136 ---------EQLSGGEQQRVAIARAIVNSPPLLLADEPTGNLDPDLSERILDLLKRLN-- 184
Query: 528 SSSKTVIYATHQVE 541
TVI ATH +
Sbjct: 185 KRGTTVIVATHDLS 198
|
This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein [Cellular processes, Cell division]. Length = 214 |
| >gnl|CDD|130252 TIGR01184, ntrCD, nitrate transport ATP-binding subunits C and D | Back alignment and domain information |
|---|
Score = 60.2 bits (146), Expect = 7e-10
Identities = 56/212 (26%), Positives = 94/212 (44%), Gaps = 31/212 (14%)
Query: 376 LRNINLKVFHGMRVAVCGTVGSGKSSCLSCILGGVPKESGIIRLCGT--------KAYVA 427
L+ +NL + G +++ G G GKS+ L+ I G SG + L G + V
Sbjct: 1 LKGVNLTIQQGEFISLIGHSGCGKSTLLNLISGLAQPTSGGVILEGKQITEPGPDRMVVF 60
Query: 428 QS----PWIQSGKIEENILFG-----KEMDRERYERVLEACSLKKDLEVLPFGDQTIIGE 478
Q+ PW+ + ENI ++ + ++E + + ++ G +
Sbjct: 61 QNYSLLPWLT---VRENIALAVDRVLPDLSKSERRAIVE-----EHIALV--GLTEAADK 110
Query: 479 RGINLSGGQKQRIQIARPLYQDADIFLLDDPFSPVDDHTGAHL---FKFCWVSSSKTVIY 535
R LSGG KQR+ IAR L + LLD+PF +D T +L W TV+
Sbjct: 111 RPGQLSGGMKQRVAIARALSIRPKVLLLDEPFGALDALTRGNLQEELMQIWEEHRVTVLM 170
Query: 536 ATHQV-EFLPAADLILVIKDGKITQAGKYSDI 566
TH V E L +D ++++ +G G+ ++
Sbjct: 171 VTHDVDEALLLSDRVVMLTNGPAANIGQILEV 202
|
This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase [Transport and binding proteins, Anions, Transport and binding proteins, Other]. Length = 230 |
| >gnl|CDD|182036 PRK09700, PRK09700, D-allose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 62.5 bits (152), Expect = 7e-10
Identities = 61/275 (22%), Positives = 103/275 (37%), Gaps = 51/275 (18%)
Query: 371 SPNPTLRNINLKVFHGMRVAVCGTVGSGKSSCLSCILGGVPKESGIIRLCGTKAYVAQSP 430
P L+++NL V+ G A+ G G+GKS+ + + G G I + Y
Sbjct: 16 GPVHALKSVNLTVYPGEIHALLGENGAGKSTLMKVLSGIHEPTKGTITINN-INYNKLDH 74
Query: 431 ----------------WIQSGKIEENILFG---------------KEMDRERYERVLEAC 459
I + EN+ G +EM R R +L
Sbjct: 75 KLAAQLGIGIIYQELSVIDELTVLENLYIGRHLTKKVCGVNIIDWREM-RVRAAMMLLRV 133
Query: 460 SLKKDLEVLPFGDQTIIGERGINLSGGQKQRIQIARPLYQDADIFLLDDPFSPVDDHTGA 519
LK DL+ E+ NLS KQ ++IA+ L DA + ++D+P S + +
Sbjct: 134 GLKVDLD-----------EKVANLSISHKQMLEIAKTLMLDAKVIIMDEPTSSLTNKEVD 182
Query: 520 HLFKFC--WVSSSKTVIYATHQV-EFLPAADLILVIKDGKITQAGKYSDILNSGTDFM-- 574
+LF ++Y +H++ E D V+KDG +G SD+ N +
Sbjct: 183 YLFLIMNQLRKEGTAIVYISHKLAEIRRICDRYTVMKDGSSVCSGMVSDVSNDDIVRLMV 242
Query: 575 --ELVGAHKQALSGLDSIDRGPVSERKSINKENDG 607
EL + ++ V E +++ +
Sbjct: 243 GRELQNRFNAMKENVSNLAHETVFEVRNVTSRDRK 277
|
Length = 510 |
| >gnl|CDD|172734 PRK14246, PRK14246, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 60.4 bits (146), Expect = 8e-10
Identities = 56/224 (25%), Positives = 99/224 (44%), Gaps = 27/224 (12%)
Query: 950 IRHLQVRYAPNLPLVLRGRTGSGKSTLIQTLFRIVE------STAGHILIDGKDISLIGL 1003
++ + ++ N + G +GSGKSTL++ L R++E G +L GKDI I
Sbjct: 26 LKDITIKIPNNSIFGIMGPSGSGKSTLLKVLNRLIEIYDSKIKVDGKVLYFGKDIFQIDA 85
Query: 1004 HDLRTRLSIIPQDPTMFEG-TTRSNLD-PLEEHADEQ-------IWEALDKCQLGDEVRK 1054
LR + ++ Q P F + N+ PL+ H ++ + E L K L EV
Sbjct: 86 IKLRKEVGMVFQQPNPFPHLSIYDNIAYPLKSHGIKEKREIKKIVEECLRKVGLWKEVYD 145
Query: 1055 KKGKLDSQ-----------GRVLLKKSKVLVLDEATASVDTATDNQIQQTLRQHFSDCTV 1103
+ SQ R L K KVL++DE T+ +D I++ + + ++ +
Sbjct: 146 RLNSPASQLSGGQQQRLTIARALALKPKVLLMDEPTSMIDIVNSQAIEKLITELKNEIAI 205
Query: 1104 VTIAHRITSVLDSA-MVLLLNHGLIKEYDSPTKLLENKSSSFAQ 1146
V ++H V A V L +G + E+ S ++ + + +
Sbjct: 206 VIVSHNPQQVARVADYVAFLYNGELVEWGSSNEIFTSPKNELTE 249
|
Length = 257 |
| >gnl|CDD|213182 cd03215, ABC_Carb_Monos_II, Second domain of the ATP-binding cassette component of monosaccharide transport system | Back alignment and domain information |
|---|
Score = 58.6 bits (143), Expect = 1e-09
Identities = 52/187 (27%), Positives = 90/187 (48%), Gaps = 25/187 (13%)
Query: 376 LRNINLKVFHGMRVAVCGTVGSGKSSCLSCILGGVPKESGIIRLCGTKAYVAQSP--WIQ 433
+R+++ +V G V + G VG+G++ + G P SG I L G K +SP I+
Sbjct: 16 VRDVSFEVRAGEIVGIAGLVGNGQTELAEALFGLRPPASGEITLDG-KPVTRRSPRDAIR 74
Query: 434 SGKIEENILFGKEMDRERYERVLEACSLKKDLEVLPFGDQTIIGERGINLSGGQKQRIQI 493
+G I + E DR+R VL+ L + + LSGG +Q++ +
Sbjct: 75 AG-----IAYVPE-DRKREGLVLD----------LSVAENIALSSL---LSGGNQQKVVL 115
Query: 494 ARPLYQDADIFLLDDPFSPVDDHTGAHLFKFC--WVSSSKTVIYATHQVEFLPA-ADLIL 550
AR L +D + +LD+P VD A +++ + K V+ + +++ L D IL
Sbjct: 116 ARWLARDPRVLILDEPTRGVDVGAKAEIYRLIRELADAGKAVLLISSELDELLGLCDRIL 175
Query: 551 VIKDGKI 557
V+ +G+I
Sbjct: 176 VMYEGRI 182
|
This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter. Length = 182 |
| >gnl|CDD|224043 COG1118, CysA, ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 60.4 bits (147), Expect = 2e-09
Identities = 50/206 (24%), Positives = 91/206 (44%), Gaps = 25/206 (12%)
Query: 962 PLVLRGRTGSGKSTLIQTLFRIVESTAGHILIDG---KDISLIGLHDLRTRLSIIPQDPT 1018
+ L G +G+GKSTL++ + + AG I ++G D+S + + D ++ + Q
Sbjct: 30 LVALLGPSGAGKSTLLRIIAGLETPDAGRIRLNGRVLFDVSNLAVRD--RKVGFVFQHYA 87
Query: 1019 MFE----------GTTRSNLDPLEEHADEQIWEALDKCQLGDEVRKKKGKLDS--QGRVL 1066
+F G P E ++ E L QL + +L + RV
Sbjct: 88 LFPHMTVADNIAFGLKVRKERPSEAEIRARVEELLRLVQLEGLADRYPAQLSGGQRQRVA 147
Query: 1067 LKKS-----KVLVLDEATASVDTATDNQIQQTLR--QHFSDCTVVTIAHRITSVLDSA-M 1118
L ++ KVL+LDE ++D ++++ LR T V + H L+ A
Sbjct: 148 LARALAVEPKVLLLDEPFGALDAKVRKELRRWLRKLHDRLGVTTVFVTHDQEEALELADR 207
Query: 1119 VLLLNHGLIKEYDSPTKLLENKSSSF 1144
V++LN G I++ P ++ ++ +S F
Sbjct: 208 VVVLNQGRIEQVGPPDEVYDHPASRF 233
|
Length = 345 |
| >gnl|CDD|213230 cd03263, ABC_subfamily_A, ATP-binding cassette domain of the lipid transporters, subfamily A | Back alignment and domain information |
|---|
Score = 58.7 bits (143), Expect = 2e-09
Identities = 42/186 (22%), Positives = 69/186 (37%), Gaps = 33/186 (17%)
Query: 950 IRHLQVRYAPNLPLVLR---------------GRTGSGKSTLIQTLFRIVESTAGHILID 994
IR+L Y + G G+GK+T ++ L + T+G I+
Sbjct: 3 IRNLTKTYKKGTKPAVDDLSLNVYKGEIFGLLGHNGAGKTTTLKMLTGELRPTSGTAYIN 62
Query: 995 GKDISLIGLHDLRTRLSIIPQDPTMFEG-TTRSNLD---PL----EEHADEQIWEALDKC 1046
G I R L PQ +F+ T R +L L + E++ L
Sbjct: 63 GYSI-RTDRKAARQSLGYCPQFDALFDELTVREHLRFYARLKGLPKSEIKEEVELLLRVL 121
Query: 1047 QLGDEVRKKKGKLDSQG--RVL------LKKSKVLVLDEATASVDTATDNQIQQTLRQHF 1098
L D K+ + S G R L + VL+LDE T+ +D A+ I + +
Sbjct: 122 GLTD-KANKRARTLSGGMKRKLSLAIALIGGPSVLLLDEPTSGLDPASRRAIWDLILEVR 180
Query: 1099 SDCTVV 1104
+++
Sbjct: 181 KGRSII 186
|
The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages. Length = 220 |
| >gnl|CDD|237421 PRK13539, PRK13539, cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Score = 58.3 bits (142), Expect = 2e-09
Identities = 48/186 (25%), Positives = 75/186 (40%), Gaps = 39/186 (20%)
Query: 376 LRNINLKVFHGMRVAVCGTVGSGKSSCLSCILGGVPKESGIIRLCGTKA----YVAQSPW 431
++ + G + + G GSGK++ L I G +P +G I+L G +
Sbjct: 18 FSGLSFTLAAGEALVLTGPNGSGKTTLLRLIAGLLPPAAGTIKLDGGDIDDPDVAEACHY 77
Query: 432 I--QSG-----KIEENILFGKEM---DRERYERVLEACSLKKDLEVLPFGDQTIIGERGI 481
+ ++ + EN+ F + LEA L L LPFG
Sbjct: 78 LGHRNAMKPALTVAENLEFWAAFLGGEELDIAAALEAVGLA-PLAHLPFG---------- 126
Query: 482 NLSGGQKQRIQIARPLYQDADIFLLDDPFSPVDDHTGA--------HLFKFCWVSSSKTV 533
LS GQK+R+ +AR L + I++LD+P + +D A HL + V
Sbjct: 127 YLSAGQKRRVALARLLVSNRPIWILDEPTAALDAAAVALFAELIRAHL------AQGGIV 180
Query: 534 IYATHQ 539
I ATH
Sbjct: 181 IAATHI 186
|
Length = 207 |
| >gnl|CDD|172750 PRK14262, PRK14262, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 59.2 bits (143), Expect = 2e-09
Identities = 48/212 (22%), Positives = 97/212 (45%), Gaps = 30/212 (14%)
Query: 967 GRTGSGKSTLIQTLFRIVES-----TAGHILIDGKDI--SLIGLHDLRTRLSIIPQDPTM 1019
G +G GK+TL++++ R+ + G I G+DI + + + R ++ ++ Q PT
Sbjct: 36 GPSGCGKTTLLRSINRMNDHIPGFRVEGKIYFKGQDIYDPQLDVTEYRKKVGMVFQKPTP 95
Query: 1020 FEGTTRSNLD--------PLEEHADEQIWEALDKCQLGDEVRKKKGKLDSQ--------- 1062
F + N+ + D + E+L K L DEV+ + K ++
Sbjct: 96 FPMSIYDNVAFGPRIHGVKSKHKLDRIVEESLKKAALWDEVKSELNKPGTRLSGGQQQRL 155
Query: 1063 --GRVLLKKSKVLVLDEATASVDTATDNQIQQTLRQHFSDCTVVTIAHRITSVLD-SAMV 1119
R L + +V++LDE T+++D +I++ L + + T+V + H I + + +
Sbjct: 156 CIARALAVEPEVILLDEPTSALDPIATQRIEKLLEELSENYTIVIVTHNIGQAIRIADYI 215
Query: 1120 LLLNHGLIKEYDSPTKLLENKSSSFAQLVAEY 1151
+ G + EY +++E + +L EY
Sbjct: 216 AFMYRGELIEYGPTREIVERPKN---KLTEEY 244
|
Length = 250 |
| >gnl|CDD|213259 cd03292, ABC_FtsE_transporter, ATP-binding cassette domain of the cell division transporter | Back alignment and domain information |
|---|
Score = 58.6 bits (142), Expect = 2e-09
Identities = 45/189 (23%), Positives = 86/189 (45%), Gaps = 28/189 (14%)
Query: 963 LVLRGRTGSGKSTLIQTLFRIVESTAGHILIDGKDISLIGLHD-----LRTRLSIIPQDP 1017
+ L G +G+GKSTL++ +++ T+G I ++G+D+S L LR ++ ++ QD
Sbjct: 30 VFLVGPSGAGKSTLLKLIYKEELPTSGTIRVNGQDVS--DLRGRAIPYLRRKIGVVFQDF 87
Query: 1018 TMFEGTTRSNLD----PLE------EHADEQIWEALDKCQLGDEVRKKKGKLD--SQGRV 1065
+ R+ + LE +++ AL+ L + R +L Q RV
Sbjct: 88 RLL--PDRNVYENVAFALEVTGVPPREIRKRVPAALELVGLSHKHRALPAELSGGEQQRV 145
Query: 1066 LLKKS-----KVLVLDEATASVDTATDNQIQQTLRQHFSDCTVVTIAHRITSVLD--SAM 1118
+ ++ +L+ DE T ++D T +I L++ T V +A ++D
Sbjct: 146 AIARAIVNSPTILIADEPTGNLDPDTTWEIMNLLKKINKAGTTVVVATHAKELVDTTRHR 205
Query: 1119 VLLLNHGLI 1127
V+ L G +
Sbjct: 206 VIALERGKL 214
|
FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring. Length = 214 |
| >gnl|CDD|184210 PRK13651, PRK13651, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 59.7 bits (145), Expect = 2e-09
Identities = 45/156 (28%), Positives = 70/156 (44%), Gaps = 35/156 (22%)
Query: 437 IEENILFG-------KEMDRERYERVLEACSLKKD-LEVLPFGDQTIIGERGINLSGGQK 488
IE++I+FG KE ++R + +E L + L+ PF LSGGQK
Sbjct: 123 IEKDIIFGPVSMGVSKEEAKKRAAKYIELVGLDESYLQRSPF-----------ELSGGQK 171
Query: 489 QRIQIARPLYQDADIFLLDDPFSPVDDHTGA--------HLFKFCWVSSSKTVIYATHQV 540
+R+ +A L + D + D+P + +D G +L K KT+I TH +
Sbjct: 172 RRVALAGILAMEPDFLVFDEPTAGLDPQ-GVKEILEIFDNLNK-----QGKTIILVTHDL 225
Query: 541 E-FLPAADLILVIKDGKITQAGKYSDILNSGTDFME 575
+ L + KDGKI + G DIL+ F+
Sbjct: 226 DNVLEWTKRTIFFKDGKIIKDGDTYDILSD-NKFLI 260
|
Length = 305 |
| >gnl|CDD|188099 TIGR00972, 3a0107s01c2, phosphate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 58.8 bits (143), Expect = 3e-09
Identities = 50/172 (29%), Positives = 69/172 (40%), Gaps = 45/172 (26%)
Query: 376 LRNINLKVFHGMRVAVCGTVGSGKSSCLSCI-----LGGVPKESGIIRLCGTKAY----- 425
L+NINL + A+ G G GKS+ L + L + G + G Y
Sbjct: 17 LKNINLDIPKNQVTALIGPSGCGKSTLLRSLNRMNDLVPGVRIEGKVLFDGQDIYDKKID 76
Query: 426 ----------VAQSPWIQSGKIEENILFG---------KEMDRERYERVLEACSL----K 462
V Q P I +NI +G KE+D E E L+ +L K
Sbjct: 77 VVELRRRVGMVFQKPNPFPMSIYDNIAYGPRLHGIKDKKELD-EIVEESLKKAALWDEVK 135
Query: 463 KDLEVLPFGDQTIIGERGINLSGGQKQRIQIARPLYQDADIFLLDDPFSPVD 514
L G LSGGQ+QR+ IAR L + ++ LLD+P S +D
Sbjct: 136 DRLHDSALG-----------LSGGQQQRLCIARALAVEPEVLLLDEPTSALD 176
|
This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters [Transport and binding proteins, Anions]. Length = 247 |
| >gnl|CDD|226967 COG4608, AppF, ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 59.1 bits (144), Expect = 3e-09
Identities = 47/195 (24%), Positives = 78/195 (40%), Gaps = 50/195 (25%)
Query: 960 NLPLVLRGRTGSGKSTLIQTLFRIVESTAGHILIDGKDISLIGLHDLRTRLSIIPQDPTM 1019
L LV G +G GKSTL + + + E T+G IL +GKDI+ +
Sbjct: 41 TLGLV--GESGCGKSTLGRLILGLEEPTSGEILFEGKDITKL------------------ 80
Query: 1020 FEGTTRSNLDPLEEHADEQIWEALDKCQLGDEVRKKKGKLDSQ-----------GRVLLK 1068
+E E++ E L+K L +E + + R L
Sbjct: 81 -----------SKEERRERVLELLEKVGLPEEF---LYRYPHELSGGQRQRIGIARALAL 126
Query: 1069 KSKVLVLDEATASVDTATDNQIQQTLR--QHFSDCTVVTIAHRITSVLD--SAMVLLLNH 1124
K++V DE +++D + QI L+ Q T + I+H + SV+ S + ++
Sbjct: 127 NPKLIVADEPVSALDVSVQAQILNLLKDLQEELGLTYLFISHDL-SVVRYISDRIAVMYL 185
Query: 1125 GLIKEYDSPTKLLEN 1139
G I E ++ N
Sbjct: 186 GKIVEIGPTEEVFSN 200
|
Length = 268 |
| >gnl|CDD|184202 PRK13642, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 59.0 bits (142), Expect = 3e-09
Identities = 60/241 (24%), Positives = 106/241 (43%), Gaps = 30/241 (12%)
Query: 358 IEIIDGSFSWDFSSPNPTLRNINLKVFHGMRVAVCGTVGSGKSSCLSCILGGVPKESGII 417
+E+ + F ++ S L ++ + G V++ G GSGKS+ I G + G +
Sbjct: 5 LEVENLVFKYEKESDVNQLNGVSFSITKGEWVSIIGQNGSGKSTTARLIDGLFEEFEGKV 64
Query: 418 RLCGTK-------------AYVAQSPWIQ--SGKIEENILFGKEMD----RERYERVLEA 458
++ G V Q+P Q +E+++ FG E E +RV EA
Sbjct: 65 KIDGELLTAENVWNLRRKIGMVFQNPDNQFVGATVEDDVAFGMENQGIPREEMIKRVDEA 124
Query: 459 CSLKKDLEVLPFGDQTIIGERGINLSGGQKQRIQIARPLYQDADIFLLDDPFSPVDDHTG 518
+ +L F + LSGGQKQR+ +A + +I +LD+ S +D
Sbjct: 125 LLA---VNMLDFKTR-----EPARLSGGQKQRVAVAGIIALRPEIIILDESTSMLDPTGR 176
Query: 519 AHLFKFCWVSSSK---TVIYATHQVEFLPAADLILVIKDGKITQAGKYSDILNSGTDFME 575
+ + K TV+ TH ++ ++D ILV+K G+I + S++ + D +E
Sbjct: 177 QEIMRVIHEIKEKYQLTVLSITHDLDEAASSDRILVMKAGEIIKEAAPSELFATSEDMVE 236
Query: 576 L 576
+
Sbjct: 237 I 237
|
Length = 277 |
| >gnl|CDD|213201 cd03234, ABCG_White, White pigment protein homolog of ABCG transporter subfamily | Back alignment and domain information |
|---|
Score = 58.1 bits (141), Expect = 4e-09
Identities = 53/209 (25%), Positives = 85/209 (40%), Gaps = 28/209 (13%)
Query: 376 LRNINLKVFHGMRVAVCGTVGSGKSSCLSCILGGVPKE---SGIIRLCGTK--------- 423
L +++L V G +A+ G+ GSGK++ L I G V SG I G
Sbjct: 23 LNDVSLHVESGQVMAILGSSGSGKTTLLDAISGRVEGGGTTSGQILFNGQPRKPDQFQKC 82
Query: 424 -AYVAQSP-WIQSGKIEENILF-----GKEMDRERYERVLEACSLKKDLEVLPFGDQTII 476
AYV Q + + E + + + + L +DL I
Sbjct: 83 VAYVRQDDILLPGLTVRETLTYTAILRLPRKSSDAIRKKRVEDVLLRDL-----ALTRIG 137
Query: 477 GERGINLSGGQKQRIQIARPLYQDADIFLLDDPFSPVDDHTGAHLFKFC--WVSSSKTVI 534
G +SGG+++R+ IA L D + +LD+P S +D T +L ++ VI
Sbjct: 138 GNLVKGISGGERRRVSIAVQLLWDPKVLILDEPTSGLDSFTALNLVSTLSQLARRNRIVI 197
Query: 535 YATHQ--VEFLPAADLILVIKDGKITQAG 561
HQ + D IL++ G+I +G
Sbjct: 198 LTIHQPRSDLFRLFDRILLLSSGEIVYSG 226
|
The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors. The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in macrophages, hepatocytes, and intestinal mucosa cells. ABCG1 (ABC8), the human homolog of the Drosophila white gene is induced in monocyte-derived macrophages during cholesterol influx mediated by acetylated low-density lipoprotein. It is possible that human ABCG1 forms heterodimers with several heterologous partners. Length = 226 |
| >gnl|CDD|213187 cd03220, ABC_KpsT_Wzt, ATP-binding cassette component of polysaccharide transport system | Back alignment and domain information |
|---|
Score = 57.9 bits (141), Expect = 4e-09
Identities = 50/208 (24%), Positives = 85/208 (40%), Gaps = 43/208 (20%)
Query: 376 LRNINLKVFHGMRVAVCGTVGSGKSSCLSCILGGV-PKESGIIRLCGTKAYVAQSPWI-- 432
L++++ +V G R+ + G G+GKS+ L +L G+ P +SG + + G + +
Sbjct: 38 LKDVSFEVPRGERIGLIGRNGAGKSTLLR-LLAGIYPPDSGTVTVRGRVS------SLLG 90
Query: 433 --------QSGKIEENILF--------GKEMDRERYERVLEACSLKKDLEVLPFGDQTII 476
+G ENI KE+D E+ + ++E L ++ LP
Sbjct: 91 LGGGFNPELTG--RENIYLNGRLLGLSRKEID-EKIDEIIEFSELGDFID-LPVK----- 141
Query: 477 GERGINLSGGQKQRIQIARPLYQDADIFLLDDPFSPVDDHTGAHLFKF--CWVSSSKTVI 534
S G K R+ A + DI L+D+ + D + + KTVI
Sbjct: 142 -----TYSSGMKARLAFAIATALEPDILLIDEVLAVGDAAFQEKCQRRLRELLKQGKTVI 196
Query: 535 YATHQVEFLPA-ADLILVIKDGKITQAG 561
+H + D LV++ GKI G
Sbjct: 197 LVSHDPSSIKRLCDRALVLEKGKIRFDG 224
|
The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export. Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenza) and a cytoplasmic membrane protein MPA2. Length = 224 |
| >gnl|CDD|163431 TIGR03719, ABC_ABC_ChvD, ATP-binding cassette protein, ChvD family | Back alignment and domain information |
|---|
Score = 60.3 bits (147), Expect = 4e-09
Identities = 67/238 (28%), Positives = 103/238 (43%), Gaps = 57/238 (23%)
Query: 376 LRNINLKVFHGMRVAVCGTVGSGKSSCLSCILGGVPKE-SGIIRLC-GTKA-YVAQSPWI 432
L++I+L F G ++ V G G+GKS+ L I+ GV KE +G R G K Y+ Q P +
Sbjct: 21 LKDISLSFFPGAKIGVLGLNGAGKSTLLR-IMAGVDKEFNGEARPAPGIKVGYLPQEPQL 79
Query: 433 QSGK-IEENILFG----------------------KEMDR-----ERYERVLEAC---SL 461
K + EN+ G +MD + +++A L
Sbjct: 80 DPTKTVRENVEEGVAEIKDALDRFNEISAKFAEPDADMDALLAEQAELQEIIDAADAWDL 139
Query: 462 KKDLEV------LPFGDQTIIGERGINLSGGQKQRIQIARPLYQDADIFLLDDPFSPVDD 515
+ LE+ P D + LSGG+++R+ + R L D+ LLD+P + +D
Sbjct: 140 DRKLEIAMDALRCPPWDADVT-----KLSGGERRRVALCRLLLSKPDMLLLDEPTNHLDA 194
Query: 516 HTGA----HLFKFCWVSSSKTVIYATHQVEFLP-AADLILVIKDGK-ITQAGKYSDIL 567
+ A HL ++ TV+ TH FL A IL + G+ I G YS L
Sbjct: 195 ESVAWLEQHLQEY-----PGTVVAVTHDRYFLDNVAGWILELDRGRGIPWEGNYSSWL 247
|
Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown. Length = 552 |
| >gnl|CDD|184204 PRK13645, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 58.9 bits (142), Expect = 4e-09
Identities = 64/243 (26%), Positives = 103/243 (42%), Gaps = 39/243 (16%)
Query: 359 EIIDGSFSWDFSSPNP----TLRNINLKVFHGMRVAVCGTVGSGKSSCLSCILGGVPKES 414
+II + S+ ++ P L N +L V GT GSGKS+ + G + E+
Sbjct: 6 DIILDNVSYTYAKKTPFEFKALNNTSLTFKKNKVTCVIGTTGSGKSTMIQLTNGLIISET 65
Query: 415 G------------------IIRLCGTKAYVAQSPWIQ--SGKIEENILFGK----EMDRE 450
G + RL V Q P Q IE++I FG E +E
Sbjct: 66 GQTIVGDYAIPANLKKIKEVKRLRKEIGLVFQFPEYQLFQETIEKDIAFGPVNLGENKQE 125
Query: 451 RYERVLEACSLKKDLEVLPFGDQTIIGERGINLSGGQKQRIQIARPLYQDADIFLLDDP- 509
Y++V E L LP + + LSGGQK+R+ +A + D + +LD+P
Sbjct: 126 AYKKVPELL----KLVQLP---EDYVKRSPFELSGGQKRRVALAGIIAMDGNTLVLDEPT 178
Query: 510 --FSPVDDHTGAHLFKFCWVSSSKTVIYATHQV-EFLPAADLILVIKDGKITQAGKYSDI 566
P + +LF+ K +I TH + + L AD ++V+ +GK+ G +I
Sbjct: 179 GGLDPKGEEDFINLFERLNKEYKKRIIMVTHNMDQVLRIADEVIVMHEGKVISIGSPFEI 238
Query: 567 LNS 569
++
Sbjct: 239 FSN 241
|
Length = 289 |
| >gnl|CDD|216049 pfam00664, ABC_membrane, ABC transporter transmembrane region | Back alignment and domain information |
|---|
Score = 58.5 bits (142), Expect = 5e-09
Identities = 48/274 (17%), Positives = 92/274 (33%), Gaps = 44/274 (16%)
Query: 83 ILFIAILALLYTLATYVGPYLIDNFVQYLNGRQAFE------------YEGYVLCLSERH 130
+L +L +L V P L+ F+ L E G + L +
Sbjct: 1 LLIAILLLILAGATALVFPLLLGRFLDSLIDGNGDERSSLISLAILLIAVGVLQGLLLQG 60
Query: 131 WFFQVQQFGIRFRATLFAMIYNKGLTLSGQAKQGNTSGEIINLIAVDAER---------- 180
F+ ++ G R R LF + + L L N+ GE+ + + D +
Sbjct: 61 SFYLGERLGQRIRKRLFRALLRQILGLPMSFFDTNSVGELTSRLTNDVSKIRDGLGDKLG 120
Query: 181 ----------ALLILYKKLG-LASIATLLATAIVMLANFPLGRLREKFQDKFMETKDRRI 229
I+ G ++ L +++L + L + K K + +
Sbjct: 121 LFFQSLATVVGGFIVMFYYGWKLTLVLLAILPLLILLSAVLAKKLRKLNRKEQKAYAKAG 180
Query: 230 KATSEILRNMRILKLQGWE----------LKKNETAWLKKSVYTEAMISF-FCWGAPTFV 278
E L +R +K G E L+ E A +KK++ ++
Sbjct: 181 SVAEESLSGIRTVKAFGREEYELERYDKALEDAEKAGIKKAITAGLSFGITQLISYLSYA 240
Query: 279 SVVTFGSCILLGIPLESGMILSALTTFKILQEPI 312
+ FG+ +++ L G + + L+ L P+
Sbjct: 241 LALWFGAYLVISGGLSVGTVFAFLSLGLQLSGPL 274
|
This family represents a unit of six transmembrane helices. Many members of the ABC transporter family (pfam00005) have two such regions. Length = 274 |
| >gnl|CDD|213198 cd03231, ABC_CcmA_heme_exporter, Cytochrome c biogenesis ATP-binding export protein | Back alignment and domain information |
|---|
Score = 57.1 bits (138), Expect = 5e-09
Identities = 38/144 (26%), Positives = 63/144 (43%), Gaps = 10/144 (6%)
Query: 963 LVLRGRTGSGKSTLIQTLFRIVESTAGHILIDGKDISLIGLHDLRTRLSIIPQDPTMFEG 1022
L + G GSGK+TL++ L + AG +L++G + R L +
Sbjct: 29 LQVTGPNGSGKTTLLRILAGLSPPLAGRVLLNGGPLDFQRDSIARGLLYLGHAPGIKTTL 88
Query: 1023 TTRSNLDPL-EEHADEQIWEALDKCQLGDEVRKKKGKLDSQG--------RVLLKKSKVL 1073
+ NL +H+DEQ+ EAL + L + +L S G R+LL +
Sbjct: 89 SVLENLRFWHADHSDEQVEEALARVGLNGFEDRPVAQL-SAGQQRRVALARLLLSGRPLW 147
Query: 1074 VLDEATASVDTATDNQIQQTLRQH 1097
+LDE T ++D A + + + H
Sbjct: 148 ILDEPTTALDKAGVARFAEAMAGH 171
|
CcmA, the ATP-binding component of the bacterial CcmAB transporter. The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperon that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE. Length = 201 |
| >gnl|CDD|184207 PRK13648, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 58.2 bits (141), Expect = 5e-09
Identities = 59/246 (23%), Positives = 103/246 (41%), Gaps = 31/246 (12%)
Query: 353 NSDTAIEIIDGSFSWDFSSPNPTLRNINLKVFHGMRVAVCGTVGSGKSSCLSCILG-GVP 411
+ ++ I + SF + S + TL++++ + G ++ G GSGKS+ ++G
Sbjct: 3 DKNSIIVFKNVSFQYQ-SDASFTLKDVSFNIPKGQWTSIVGHNGSGKSTIAKLMIGIEKV 61
Query: 412 KESGII--RLCGTK----------AYVAQSPWIQ--SGKIEENILFGKEMD----RERYE 453
K I T V Q+P Q ++ ++ FG E E +
Sbjct: 62 KSGEIFYNNQAITDDNFEKLRKHIGIVFQNPDNQFVGSIVKYDVAFGLENHAVPYDEMHR 121
Query: 454 RVLEACSLKKDLEVLPFGDQTIIGERGINLSGGQKQRIQIARPLYQDADIFLLDDPFSPV 513
RV EA +++L D LSGGQKQR+ IA L + + +LD+ S +
Sbjct: 122 RVSEALK---QVDMLERAD-----YEPNALSGGQKQRVAIAGVLALNPSVIILDEATSML 173
Query: 514 DDHTGAHLFKFCW-VSSSK--TVIYATHQVEFLPAADLILVIKDGKITQAGKYSDILNSG 570
D +L V S T+I TH + AD ++V+ G + + G ++I +
Sbjct: 174 DPDARQNLLDLVRKVKSEHNITIISITHDLSEAMEADHVIVMNKGTVYKEGTPTEIFDHA 233
Query: 571 TDFMEL 576
+ +
Sbjct: 234 EELTRI 239
|
Length = 269 |
| >gnl|CDD|213235 cd03268, ABC_BcrA_bacitracin_resist, ATP-binding cassette domain of the bacitracin-resistance transporter | Back alignment and domain information |
|---|
Score = 57.2 bits (139), Expect = 6e-09
Identities = 49/198 (24%), Positives = 82/198 (41%), Gaps = 25/198 (12%)
Query: 376 LRNINLKVFHGMRVAVCGTVGSGKSSCLSCILGGVPKESGIIRLCGTKAYVAQSPWIQSG 435
L +I+L V G G G+GK++ + ILG + +SG I G + G
Sbjct: 16 LDDISLHVKKGEIYGFLGPNGAGKTTTMKIILGLIKPDSGEITFDGKSYQKNIEALRRIG 75
Query: 436 KI------------EENILFGKEMDRERYERVLEACSLKKDLEVLPFGDQTIIGERGI-N 482
+ EN+ + R +R+ E L+V+ D ++ +
Sbjct: 76 ALIEAPGFYPNLTARENLRLLARLLGIRKKRIDEV------LDVVGLKD---SAKKKVKG 126
Query: 483 LSGGQKQRIQIARPLYQDADIFLLDDPFSPVDDHTGAHLFKFC--WVSSSKTVIYATHQV 540
S G KQR+ IA L + D+ +LD+P + +D L + TV+ ++H +
Sbjct: 127 FSLGMKQRLGIALALLGNPDLLILDEPTNGLDPDGIKELRELILSLRDQGITVLISSHLL 186
Query: 541 -EFLPAADLILVIKDGKI 557
E AD I +I GK+
Sbjct: 187 SEIQKVADRIGIINKGKL 204
|
The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multi-enzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein. Length = 208 |
| >gnl|CDD|237647 PRK14248, PRK14248, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 58.1 bits (140), Expect = 6e-09
Identities = 51/220 (23%), Positives = 100/220 (45%), Gaps = 29/220 (13%)
Query: 950 IRHLQVRYAPNLPLVLRGRTGSGKSTLIQTLFRIVE-----STAGHILIDGKDI--SLIG 1002
+ + + + L G +G GKST ++++ R+ + + G IL +G +I S I
Sbjct: 37 VNDISMDIEKHAVTALIGPSGCGKSTFLRSINRMNDLIPSARSEGEILYEGLNILDSNIN 96
Query: 1003 LHDLRTRLSIIPQDPTMFEGTTRSNLDPLEEHA--------DEQIWEALDKCQLGDEVRK 1054
+ +LR + ++ Q P F + +N+ ++A DE + E+L K L DEV+
Sbjct: 97 VVNLRREIGMVFQKPNPFPKSIYNNITHALKYAGERRKSVLDEIVEESLTKAALWDEVKD 156
Query: 1055 K--KGKLDSQG---------RVLLKKSKVLVLDEATASVDTATDNQIQQTLRQHFSDCTV 1103
+ L G R L K VL+LDE +++D ++ +I++ + + + ++
Sbjct: 157 RLHSSALSLSGGQQQRLCIARTLAMKPAVLLLDEPASALDPISNAKIEELITELKEEYSI 216
Query: 1104 VTIAHRITSVL--DSAMVLLLNHGLIKEYDSPTKLLENKS 1141
+ + H + L LN L+ EYD ++ +
Sbjct: 217 IIVTHNMQQALRVSDRTAFFLNGDLV-EYDQTEQIFTSPK 255
|
Length = 268 |
| >gnl|CDD|224053 COG1129, MglA, ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Score = 59.4 bits (145), Expect = 7e-09
Identities = 53/218 (24%), Positives = 93/218 (42%), Gaps = 45/218 (20%)
Query: 376 LRNINLKVFHGMRVAVCGTVGSGKSSCLSCILGGVPKESGIIRLCGTKAYVAQSP--WIQ 433
+R+++ V G + + G VG+G++ + G P SG I L G K +SP I+
Sbjct: 275 VRDVSFTVRAGEILGIAGLVGAGRTELARALFGARPASSGEILLDG-KPVRIRSPRDAIK 333
Query: 434 SG-----------------KIEENILF--------GKEMDRERYERVLEACSLKKDLEVL 468
+G I ENI +DR + + E + L +
Sbjct: 334 AGIAYVPEDRKSEGLVLDMSIAENITLASLRRFSRRGLIDRRKERALAER--YIRRLRIK 391
Query: 469 PFGDQTIIGERGINLSGGQKQRIQIARPLYQDADIFLLDDPFSPVDDHTGAH------LF 522
+ IG LSGG +Q++ +AR L D + +LD+P +D GA +
Sbjct: 392 TPSPEQPIG----TLSGGNQQKVVLARWLATDPKVLILDEPTRGID--VGAKAEIYRLIR 445
Query: 523 KFCWVSSSKTVIYATHQV-EFLPAADLILVIKDGKITQ 559
+ + K ++ + ++ E L +D ILV+++G+I
Sbjct: 446 ELA--AEGKAILMISSELPELLGLSDRILVMREGRIVG 481
|
Length = 500 |
| >gnl|CDD|184586 PRK14240, PRK14240, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 57.4 bits (139), Expect = 7e-09
Identities = 53/176 (30%), Positives = 89/176 (50%), Gaps = 26/176 (14%)
Query: 959 PNLPLVLRGRTGSGKSTLIQTLFR---IVES--TAGHILIDGKDI--SLIGLHDLRTRLS 1011
N L G +G GKST ++TL R ++ S G +L+DG+DI S I ++ LR R+
Sbjct: 28 ENQVTALIGPSGCGKSTFLRTLNRMNDLIPSVKIEGEVLLDGQDIYKSDIDVNQLRKRVG 87
Query: 1012 IIPQDPTMFEGTTRSNL--DPL------EEHADEQIWEALDKCQLGDEV--RKKKGKLDS 1061
++ Q P F + N+ P ++ DE + ++L L DEV R KK L
Sbjct: 88 MVFQQPNPFPMSIYDNVAYGPRTHGIKDKKKLDEIVEKSLKGAALWDEVKDRLKKSALGL 147
Query: 1062 QG---------RVLLKKSKVLVLDEATASVDTATDNQIQQTLRQHFSDCTVVTIAH 1108
G R L + +VL++DE T+++D + +I++ +++ D T+V + H
Sbjct: 148 SGGQQQRLCIARALAVEPEVLLMDEPTSALDPISTLKIEELIQELKKDYTIVIVTH 203
|
Length = 250 |
| >gnl|CDD|184596 PRK14267, PRK14267, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 57.5 bits (139), Expect = 8e-09
Identities = 47/187 (25%), Positives = 88/187 (47%), Gaps = 28/187 (14%)
Query: 950 IRHLQVRYAPNLPLVLRGRTGSGKSTLIQTLFRIVE-----STAGHILIDGKDISLIGLH 1004
I+ + ++ N L G +G GKSTL++T R++E G + + G++I +
Sbjct: 20 IKGVDLKIPQNGVFALMGPSGCGKSTLLRTFNRLLELNEEARVEGEVRLFGRNIYSPDVD 79
Query: 1005 --DLRTRLSIIPQDP------TMFE----GTTRSNLDPLEEHADEQIWEALDKCQLGDEV 1052
++R + ++ Q P T+++ G + L ++ DE++ AL K L DEV
Sbjct: 80 PIEVRREVGMVFQYPNPFPHLTIYDNVAIGVKLNGLVKSKKELDERVEWALKKAALWDEV 139
Query: 1053 RKKKGKLDSQ-----------GRVLLKKSKVLVLDEATASVDTATDNQIQQTLRQHFSDC 1101
+ + S R L K K+L++DE TA++D +I++ L + +
Sbjct: 140 KDRLNDYPSNLSGGQRQRLVIARALAMKPKILLMDEPTANIDPVGTAKIEELLFELKKEY 199
Query: 1102 TVVTIAH 1108
T+V + H
Sbjct: 200 TIVLVTH 206
|
Length = 253 |
| >gnl|CDD|182221 PRK10070, PRK10070, glycine betaine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 58.9 bits (142), Expect = 8e-09
Identities = 57/210 (27%), Positives = 104/210 (49%), Gaps = 30/210 (14%)
Query: 963 LVLRGRTGSGKSTLIQTLFRIVESTAGHILIDGKDISLIGLHDL----RTRLSIIPQD-- 1016
V+ G +GSGKST+++ L R++E T G +LIDG DI+ I +L R +++++ Q
Sbjct: 57 FVIMGLSGSGKSTMVRLLNRLIEPTRGQVLIDGVDIAKISDAELREVRRKKIAMVFQSFA 116
Query: 1017 --PTM-FEGTTRSNLDPLEEHADEQIWEALDKC-QLG---------DEVRKKKGKLDSQG 1063
P M T ++ +A+E+ +ALD Q+G DE+ +
Sbjct: 117 LMPHMTVLDNTAFGMELAGINAEERREKALDALRQVGLENYAHSYPDELSGGMRQRVGLA 176
Query: 1064 RVLLKKSKVLVLDEATASVDTATDNQIQQTL--RQHFSDCTVVTIAHRITSVLDSAM--- 1118
R L +L++DEA +++D ++Q L Q T+V I+H LD AM
Sbjct: 177 RALAINPDILLMDEAFSALDPLIRTEMQDELVKLQAKHQRTIVFISHD----LDEAMRIG 232
Query: 1119 --VLLLNHGLIKEYDSPTKLLENKSSSFAQ 1146
+ ++ +G + + +P ++L N ++ + +
Sbjct: 233 DRIAIMQNGEVVQVGTPDEILNNPANDYVR 262
|
Length = 400 |
| >gnl|CDD|130041 TIGR00968, 3a0106s01, sulfate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 56.7 bits (137), Expect = 1e-08
Identities = 48/205 (23%), Positives = 97/205 (47%), Gaps = 21/205 (10%)
Query: 959 PNLPLV-LRGRTGSGKSTLIQTLFRIVESTAGHILIDGKDISLIGLHDLRTRLSIIPQDP 1017
P LV L G +GSGKSTL++ + + + +G I ++G+D + + D ++ + Q
Sbjct: 24 PTGSLVALLGPSGSGKSTLLRIIAGLEQPDSGRIRLNGQDATRVHARD--RKIGFVFQHY 81
Query: 1018 TMFEG-TTRSNL---------DPLEEHAD-EQIWEALDKCQLGDEVRKKKGKLDSQ---- 1062
+F+ T R N+ + A E++ E + LGD + Q
Sbjct: 82 ALFKHLTVRDNIAFGLEIRKHPKAKIKARVEELLELVQLEGLGDRYPNQLSGGQRQRVAL 141
Query: 1063 GRVLLKKSKVLVLDEATASVDTATDNQIQQTLRQ--HFSDCTVVTIAHRITSVLDSA-MV 1119
R L + +VL+LDE ++D +++ LR+ T V + H ++ A +
Sbjct: 142 ARALAVEPQVLLLDEPFGALDAKVRKELRSWLRKLHDEVHVTTVFVTHDQEEAMEVADRI 201
Query: 1120 LLLNHGLIKEYDSPTKLLENKSSSF 1144
+++++G I++ SP ++ ++ ++ F
Sbjct: 202 VVMSNGKIEQIGSPDEVYDHPANPF 226
|
[Transport and binding proteins, Anions]. Length = 237 |
| >gnl|CDD|223487 COG0410, LivF, ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 56.7 bits (138), Expect = 1e-08
Identities = 52/217 (23%), Positives = 92/217 (42%), Gaps = 42/217 (19%)
Query: 963 LVLRGRTGSGKSTLIQTLFRIVESTAGHILIDGKDISLIGLHDLRTRLSI--IPQDPTMF 1020
+ L GR G+GK+TL++T+ +V +G I+ DG+DI+ + H+ R RL I +P+ +F
Sbjct: 32 VALLGRNGAGKTTLLKTIMGLVRPRSGRIIFDGEDITGLPPHE-RARLGIAYVPEGRRIF 90
Query: 1021 -EGTTRSNL------DPLEEHADEQIWEALD-----KCQLGDEVRKKKGKLDS----Q-- 1062
T NL +E + + E + K E R ++ S Q
Sbjct: 91 PRLTVEENLLLGAYARRDKEAQERDLEEVYELFPRLK-----ERRNQRAGTLSGGEQQML 145
Query: 1063 --GRVLLKKSKVLVLDEATASVDTATDNQIQQTLRQHFSDCTVVTI------AHRITSVL 1114
R L+ + K+L+LDE + + +I + +++ +TI A +
Sbjct: 146 AIARALMSRPKLLLLDEPSEGLAPKIVEEIFEAIKE-LRKEGGMTILLVEQNARFALEIA 204
Query: 1115 DSAMVLLLNHGLIKEYDSPTKLLENKSSSFAQLVAEY 1151
D VL +G I + +LL + + Y
Sbjct: 205 DRGYVLE--NGRIVLSGTAAELLADP-----DVREAY 234
|
Length = 237 |
| >gnl|CDD|226967 COG4608, AppF, ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 57.2 bits (139), Expect = 1e-08
Identities = 51/198 (25%), Positives = 81/198 (40%), Gaps = 32/198 (16%)
Query: 376 LRNINLKVFHGMRVAVCGTVGSGKSSCLSCILGGVPKESGIIRLCGTKAYVAQSPWIQSG 435
+ ++ + G + + G G GKS+ ILG SG I G
Sbjct: 29 VDGVSFSIKEGETLGLVGESGCGKSTLGRLILGLEEPTSGEILFEG-------------- 74
Query: 436 KIEENILFGKEMDRERYERVLEACSLKKD-LEVLPFGDQTIIGERGINLSGGQKQRIQIA 494
++ KE RER +LE L ++ L P LSGGQ+QRI IA
Sbjct: 75 --KDITKLSKEERRERVLELLEKVGLPEEFLYRYPH-----------ELSGGQRQRIGIA 121
Query: 495 RPLYQDADIFLLDDPFSPVDDHTGA---HLFKFCWVSSSKTVIYATHQVEFLPA-ADLIL 550
R L + + + D+P S +D A +L K T ++ +H + + +D I
Sbjct: 122 RALALNPKLIVADEPVSALDVSVQAQILNLLKDLQEELGLTYLFISHDLSVVRYISDRIA 181
Query: 551 VIKDGKITQAGKYSDILN 568
V+ GKI + G ++ +
Sbjct: 182 VMYLGKIVEIGPTEEVFS 199
|
Length = 268 |
| >gnl|CDD|237649 PRK14254, PRK14254, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 57.5 bits (139), Expect = 1e-08
Identities = 56/223 (25%), Positives = 96/223 (43%), Gaps = 53/223 (23%)
Query: 967 GRTGSGKSTLIQTLFRI-----VESTAGHILIDGKDISLIGLHD-------LRTRLSIIP 1014
G +G GKST ++ + R+ G + GK++ +D LR R+ ++
Sbjct: 72 GPSGCGKSTFLRCINRMNDLIDAARVEGELTFRGKNV-----YDADVDPVALRRRIGMVF 126
Query: 1015 QDPTMFEGTTRSN------LDPLEEHADEQIWEALDKCQLGDEVRKKKGKLDSQG----- 1063
Q P F + N + + DE++ E+L + L DEV K +LDS G
Sbjct: 127 QKPNPFPKSIYDNVAYGLKIQGYDGDIDERVEESLRRAALWDEV---KDQLDSSGLDLSG 183
Query: 1064 ---------RVLLKKSKVLVLDEATASVDTATDNQIQQTLRQHFSDCTVVTIAH------ 1108
R + +V+++DE +++D ++I+ + + + TVV + H
Sbjct: 184 GQQQRLCIARAIAPDPEVILMDEPASALDPVATSKIEDLIEELAEEYTVVIVTHNMQQAA 243
Query: 1109 RITSVLDSAMVLLLNHGLIKEYDSPTKLLENKSSSFAQLVAEY 1151
RI+ D V L L+ E+D K+ EN S Q V +Y
Sbjct: 244 RIS---DKTAVFLTGGELV-EFDDTDKIFENPES---QRVEDY 279
|
Length = 285 |
| >gnl|CDD|184196 PRK13636, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 57.2 bits (138), Expect = 1e-08
Identities = 53/170 (31%), Positives = 82/170 (48%), Gaps = 22/170 (12%)
Query: 965 LRGRTGSGKSTLIQTLFRIVESTAGHILIDGK--DISLIGLHDLRTRLSIIPQDP--TMF 1020
+ G G+GKSTL Q L I++ ++G IL DGK D S GL LR + ++ QDP +F
Sbjct: 37 ILGGNGAGKSTLFQNLNGILKPSSGRILFDGKPIDYSRKGLMKLRESVGMVFQDPDNQLF 96
Query: 1021 EGTTRS-------NLDPLEEHADEQIWEALDKCQLGDEVRKKKGKLDSQGR--------V 1065
+ NL E+ +++ AL + + + ++ K S G+ V
Sbjct: 97 SASVYQDVSFGAVNLKLPEDEVRKRVDNALKRTGI-EHLKDKPTHCLSFGQKKRVAIAGV 155
Query: 1066 LLKKSKVLVLDEATASVDTATDNQIQQTLR--QHFSDCTVVTIAHRITSV 1113
L+ + KVLVLDE TA +D ++I + L Q T++ H I V
Sbjct: 156 LVMEPKVLVLDEPTAGLDPMGVSEIMKLLVEMQKELGLTIIIATHDIDIV 205
|
Length = 283 |
| >gnl|CDD|184597 PRK14270, PRK14270, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 56.5 bits (136), Expect = 1e-08
Identities = 55/223 (24%), Positives = 99/223 (44%), Gaps = 37/223 (16%)
Query: 954 QVRYAPNLPL------VLRGRTGSGKSTLIQTLFRIVE-----STAGHILIDGKDI--SL 1000
Q NLP+ L G +G GKST ++ L R+ + G +L+DGK+I
Sbjct: 18 QALNDINLPIYENKITALIGPSGCGKSTFLRCLNRMNDLISNVKIEGEVLLDGKNIYDKD 77
Query: 1001 IGLHDLRTRLSIIPQDPTMFEGTTRSNLD--------PLEEHADEQIWEALDKCQLGDEV 1052
+ + +LR R+ ++ Q P F + N+ ++ D+ + AL K L DEV
Sbjct: 78 VDVVELRKRVGMVFQKPNPFPMSIYDNVAYGPRIHGIKDKKELDKIVEWALKKAALWDEV 137
Query: 1053 RK--KKGKLDSQG---------RVLLKKSKVLVLDEATASVDTATDNQIQQTLRQHFSDC 1101
+ KK L G R + K V+++DE T+++D + +I+ + + +
Sbjct: 138 KDDLKKSALKLSGGQQQRLCIARTIAVKPDVILMDEPTSALDPISTLKIEDLMVELKKEY 197
Query: 1102 TVVTIAHRI---TSVLDSAMVLLLNHGLIKEYDSPTKLLENKS 1141
T+V + H + + V D L+ G + E++ K+
Sbjct: 198 TIVIVTHNMQQASRVSDYTAFFLM--GDLIEFNKTEKIFLEPQ 238
|
Length = 251 |
| >gnl|CDD|224052 COG1127, Ttg2A, ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Score = 56.4 bits (137), Expect = 2e-08
Identities = 55/201 (27%), Positives = 89/201 (44%), Gaps = 25/201 (12%)
Query: 963 LVLRGRTGSGKSTLIQTLFRIVESTAGHILIDGKDI---SLIGLHDLRTRLSIIPQDPTM 1019
L + G +GSGKSTL++ + ++ G ILIDG+DI S L+++R R+ ++ Q +
Sbjct: 37 LAILGGSGSGKSTLLRLILGLLRPDKGEILIDGEDIPQLSEEELYEIRKRMGVLFQQGAL 96
Query: 1020 FEG-TTRSNLD-PLEEH-------ADEQIWEALDKCQLGDEVRKKKGKLDSQG------- 1063
F T N+ PL EH E + L+ L S G
Sbjct: 97 FSSLTVFENVAFPLREHTKLPESLIRELVLMKLELVGLRGAAADLYPSELSGGMRKRVAL 156
Query: 1064 -RVLLKKSKVLVLDEATASVDTATDNQIQQ---TLRQHFSDCTVVTIAHRITSVLDSA-M 1118
R + ++L LDE T+ +D + I + L TV+ + H + S+L A
Sbjct: 157 ARAIALDPELLFLDEPTSGLDPISAGVIDELIRELNDAL-GLTVIMVTHDLDSLLTIADR 215
Query: 1119 VLLLNHGLIKEYDSPTKLLEN 1139
V +L G + +P +LL +
Sbjct: 216 VAVLADGKVIAEGTPEELLAS 236
|
Length = 263 |
| >gnl|CDD|184207 PRK13648, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 56.7 bits (137), Expect = 2e-08
Identities = 44/196 (22%), Positives = 92/196 (46%), Gaps = 22/196 (11%)
Query: 967 GRTGSGKSTLIQTLFRIVESTAGHILIDGKDISLIGLHDLRTRLSIIPQDP-TMFEGTT- 1024
G GSGKST+ + + I + +G I + + I+ LR + I+ Q+P F G+
Sbjct: 42 GHNGSGKSTIAKLMIGIEKVKSGEIFYNNQAITDDNFEKLRKHIGIVFQNPDNQFVGSIV 101
Query: 1025 --------RSNLDPLEEHADEQIWEALDKCQLGDEVRKKKGKLDSQGR--------VLLK 1068
++ P +E ++ EAL + + + + L S G+ VL
Sbjct: 102 KYDVAFGLENHAVPYDE-MHRRVSEALKQVDMLERADYEPNAL-SGGQKQRVAIAGVLAL 159
Query: 1069 KSKVLVLDEATASVDTATDNQIQQTLR--QHFSDCTVVTIAHRITSVLDSAMVLLLNHGL 1126
V++LDEAT+ +D + +R + + T+++I H ++ +++ V+++N G
Sbjct: 160 NPSVIILDEATSMLDPDARQNLLDLVRKVKSEHNITIISITHDLSEAMEADHVIVMNKGT 219
Query: 1127 IKEYDSPTKLLENKSS 1142
+ + +PT++ ++
Sbjct: 220 VYKEGTPTEIFDHAEE 235
|
Length = 269 |
| >gnl|CDD|131266 TIGR02211, LolD_lipo_ex, lipoprotein releasing system, ATP-binding protein | Back alignment and domain information |
|---|
Score = 55.8 bits (135), Expect = 2e-08
Identities = 52/215 (24%), Positives = 87/215 (40%), Gaps = 45/215 (20%)
Query: 375 TLRNINLKVFHGMRVAVCGTVGSGKSSCLSCILGGVPK-ESGIIRLCGTKAYVAQSPWIQ 433
L+ ++L + G VA+ G+ GSGKS+ L +LGG+ SG + G S +
Sbjct: 20 VLKGVSLSIGKGEIVAIVGSSGSGKSTLLH-LLGGLDNPTSGEVLFNGQSLSKLSSN--E 76
Query: 434 SGKIE--------------------ENIL-------FGKEMDRERYERVLEACSLKKDLE 466
K+ EN+ + +ER +LE L+ +
Sbjct: 77 RAKLRNKKLGFIYQFHHLLPDFTALENVAMPLLIGKKSVKEAKERAYEMLEKVGLEHRIN 136
Query: 467 VLPFGDQTIIGERGINLSGGQKQRIQIARPLYQDADIFLLDDPFSPVDDHTGAHLFKFCW 526
P E LSGG++QR+ IAR L + L D+P +D++ +F
Sbjct: 137 HRP-------SE----LSGGERQRVAIARALVNQPSLVLADEPTGNLDNNNAKIIFDLML 185
Query: 527 ---VSSSKTVIYATHQVEFLPAADLILVIKDGKIT 558
+ + + TH +E D +L +KDG++
Sbjct: 186 ELNRELNTSFLVVTHDLELAKKLDRVLEMKDGQLF 220
|
This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina [Protein fate, Protein and peptide secretion and trafficking]. Length = 221 |
| >gnl|CDD|213186 cd03219, ABC_Mj1267_LivG_branched, ATP-binding cassette component of branched chain amino acids transport system | Back alignment and domain information |
|---|
Score = 55.9 bits (136), Expect = 2e-08
Identities = 49/186 (26%), Positives = 81/186 (43%), Gaps = 32/186 (17%)
Query: 970 GSGKSTLIQTLFRIVESTAGHILIDGKDISLIGLHDLRTRLSIIP--QDPTMFEG-TTRS 1026
G+GK+TL + + T+G +L DG+DI+ + H+ RL I Q P +F T
Sbjct: 36 GAGKTTLFNLISGFLRPTSGSVLFDGEDITGLPPHE-IARLGIGRTFQIPRLFPELTVLE 94
Query: 1027 NLD-----------------PLEEHADEQIWEALDKCQLGDEVRKKKGKLDSQG------ 1063
N+ E A E+ E L++ L D + G+L S G
Sbjct: 95 NVMVAAQARTGSGLLLARARREEREARERAEELLERVGLADLADRPAGEL-SYGQQRRLE 153
Query: 1064 --RVLLKKSKVLVLDEATASVDTATDNQIQQTLRQ-HFSDCTVVTIAHRITSVLDSA-MV 1119
R L K+L+LDE A ++ ++ + +R+ TV+ + H + V+ A V
Sbjct: 154 IARALATDPKLLLLDEPAAGLNPEETEELAELIRELRERGITVLLVEHDMDVVMSLADRV 213
Query: 1120 LLLNHG 1125
+L+ G
Sbjct: 214 TVLDQG 219
|
The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). Length = 236 |
| >gnl|CDD|226647 COG4181, COG4181, Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Score = 55.5 bits (134), Expect = 2e-08
Identities = 57/214 (26%), Positives = 85/214 (39%), Gaps = 43/214 (20%)
Query: 374 PTLRNINLKVFHGMRVAVCGTVGSGKSSCLSCILGGVPK-ESGIIRLCGTK--------- 423
L+ + L V G VA+ G GSGKS+ L+ +L G+ SG +RL G
Sbjct: 24 SILKGVELVVKRGETVAIVGPSGSGKSTLLA-VLAGLDDPSSGEVRLLGQPLHKLDEDAR 82
Query: 424 --------AYVAQS-PWIQSGKIEENILFGKEMD-------RERYERVLEACSLKKDLEV 467
+V QS I + EN+ E+ R + +LEA L K L
Sbjct: 83 AALRARHVGFVFQSFHLIPNLTALENVALPLELRGESSADSRAGAKALLEAVGLGKRLTH 142
Query: 468 LPFGDQTIIGERGINLSGGQKQRIQIARPLYQDADIFLLDDPFSPVDDHTGAH----LFK 523
P LSGG++QR+ +AR D+ D+P +D TG LF
Sbjct: 143 YP-----------AQLSGGEQQRVALARAFAGRPDVLFADEPTGNLDRATGDKIADLLFA 191
Query: 524 FCWVSSSKTVIYATHQVEFLPAADLILVIKDGKI 557
T++ TH + D L ++ G++
Sbjct: 192 LN-RERGTTLVLVTHDPQLAARCDRQLRLRSGRL 224
|
Length = 228 |
| >gnl|CDD|224060 COG1137, YhbG, ABC-type (unclassified) transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 55.7 bits (135), Expect = 3e-08
Identities = 41/152 (26%), Positives = 68/152 (44%), Gaps = 22/152 (14%)
Query: 965 LRGRTGSGKSTLIQTLFRIVESTAGHILIDGKDISLIGLHDLRTRLSI--IPQDPTMFEG 1022
L G G+GK+T + +V +G IL+D +DI+ + +H R RL I +PQ+ ++F
Sbjct: 35 LLGPNGAGKTTTFYMIVGLVRPDSGKILLDDEDITKLPMH-KRARLGIGYLPQEASIFRK 93
Query: 1023 -TTRSNL---------DPLEEHADEQIWEALDKCQLGDEVRKKKGKLDSQG--------R 1064
T N+ D + E++ L++ + +R K S G R
Sbjct: 94 LTVEDNIMAVLEIREKDLKKAERKEELDALLEEFHIT-HLRDSKAYSLSGGERRRVEIAR 152
Query: 1065 VLLKKSKVLVLDEATASVDTATDNQIQQTLRQ 1096
L K ++LDE A VD IQ+ ++
Sbjct: 153 ALAANPKFILLDEPFAGVDPIAVIDIQRIIKH 184
|
Length = 243 |
| >gnl|CDD|223562 COG0488, Uup, ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only] | Back alignment and domain information |
|---|
Score = 57.3 bits (139), Expect = 3e-08
Identities = 53/219 (24%), Positives = 93/219 (42%), Gaps = 25/219 (11%)
Query: 358 IEIIDGSFSWDFSSPNPTLRNINLKVFHGMRVAVCGTVGSGKSSCLSCILGGVPKESGII 417
+E + S +D L++++ ++ G R+A+ G G+GKS+ L + G + SG +
Sbjct: 322 LEFENVSKGYD--GGRLLLKDLSFRIDRGDRIAIVGPNGAGKSTLLKLLAGELGPLSGTV 379
Query: 418 RLCGTK---AYVAQSPWIQSGKIEENILFGKEMDRERYERVLEACSLKKDLEVLPF-GDQ 473
+ G Y Q + + + E E + E ++ L F G+
Sbjct: 380 K-VGETVKIGYFDQH---RDELDPDKTVL--EELSEGFPDGDEQ-EVRAYLGRFGFTGED 432
Query: 474 TIIGERGINLSGGQKQRIQIARPLYQDADIFLLDDPFSPVDDHT----GAHLFKFCWVSS 529
+ LSGG+K R+ +A+ L Q ++ LLD+P + +D + L F
Sbjct: 433 --QEKPVGVLSGGEKARLLLAKLLLQPPNLLLLDEPTNHLDIESLEALEEALLDF----- 485
Query: 530 SKTVIYATHQVEFLPA-ADLILVIKDGKITQAGKYSDIL 567
TV+ +H FL A I +++D G Y D L
Sbjct: 486 EGTVLLVSHDRYFLDRVATRIWLVEDKVEEFEGGYEDYL 524
|
Length = 530 |
| >gnl|CDD|224051 COG1126, GlnQ, ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 55.6 bits (135), Expect = 3e-08
Identities = 51/204 (25%), Positives = 90/204 (44%), Gaps = 35/204 (17%)
Query: 963 LVLRGRTGSGKSTLIQTLFRIVESTAGHILIDGKDISL-IGLHDLRTRLSIIPQDPTMFE 1021
+V+ G +GSGKSTL++ L + E +G I +DG+D+ + LR ++ ++ Q +F
Sbjct: 31 VVIIGPSGSGKSTLLRCLNGLEEPDSGSITVDGEDVGDKKDILKLRRKVGMVFQQFNLFP 90
Query: 1022 GTTRSNLDPLE--------------EHADEQIWEALDKCQLGDEVRKKKGKLDSQG---- 1063
+L LE A E+ E L+K L D+ +L S G
Sbjct: 91 -----HLTVLENVTLAPVKVKKLSKAEAREKALELLEKVGLADKADAYPAQL-SGGQQQR 144
Query: 1064 ----RVLLKKSKVLVLDEATASVDTATDNQIQQTLRQ-HFSDCTVVTIAHRIT---SVLD 1115
R L KV++ DE T+++D ++ ++ T++ + H + V D
Sbjct: 145 VAIARALAMDPKVMLFDEPTSALDPELVGEVLDVMKDLAEEGMTMIIVTHEMGFAREVAD 204
Query: 1116 SAMVLLLNHGLIKEYDSPTKLLEN 1139
V+ ++ G I E P + +N
Sbjct: 205 R--VIFMDQGKIIEEGPPEEFFDN 226
|
Length = 240 |
| >gnl|CDD|224042 COG1117, PstB, ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 55.6 bits (135), Expect = 3e-08
Identities = 49/172 (28%), Positives = 71/172 (41%), Gaps = 46/172 (26%)
Query: 376 LRNINLKVFHGMRVAVCGTVGSGKSSCLSCI------LGGVPKESGIIRLCGTKAY---- 425
L++INL + A+ G G GKS+ L C+ + G + G + L G Y
Sbjct: 23 LKDINLDIPKNKVTALIGPSGCGKSTLLRCLNRMNDLIPGA-RVEGEVLLDGKNIYDPKV 81
Query: 426 -----------VAQSPWIQSGKIEENILFG--------KEMDRERYERVLEACSL----K 462
V Q P I +N+ +G KE+D E E L+ +L K
Sbjct: 82 DVVELRRRVGMVFQKPNPFPMSIYDNVAYGLRLHGIKDKELD-EIVESSLKKAALWDEVK 140
Query: 463 KDLEVLPFGDQTIIGERGINLSGGQKQRIQIARPLYQDADIFLLDDPFSPVD 514
L G LSGGQ+QR+ IAR L ++ L+D+P S +D
Sbjct: 141 DRLHKSALG-----------LSGGQQQRLCIARALAVKPEVLLMDEPTSALD 181
|
Length = 253 |
| >gnl|CDD|213186 cd03219, ABC_Mj1267_LivG_branched, ATP-binding cassette component of branched chain amino acids transport system | Back alignment and domain information |
|---|
Score = 55.5 bits (135), Expect = 3e-08
Identities = 37/168 (22%), Positives = 59/168 (35%), Gaps = 43/168 (25%)
Query: 376 LRNINLKVFHGMRVAVCGTVGSGKSSCLSCILGGVPKESGIIRLCGT-----KAY----- 425
L +++ V G + G G+GK++ + I G + SG + G +
Sbjct: 16 LDDVSFSVRPGEIHGLIGPNGAGKTTLFNLISGFLRPTSGSVLFDGEDITGLPPHEIARL 75
Query: 426 ----------------------VAQSPWIQSGKIEENILFGKEMDRERYERVLEACSLKK 463
VA SG + + RER E +LE L
Sbjct: 76 GIGRTFQIPRLFPELTVLENVMVAAQARTGSGLLLARARREEREARERAEELLERVGLAD 135
Query: 464 DLEVLPFGDQTIIGERGINLSGGQKQRIQIARPLYQDADIFLLDDPFS 511
+ LS GQ++R++IAR L D + LLD+P +
Sbjct: 136 LADRPA-----------GELSYGQQRRLEIARALATDPKLLLLDEPAA 172
|
The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). Length = 236 |
| >gnl|CDD|163452 TIGR03740, galliderm_ABC, gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit | Back alignment and domain information |
|---|
Score = 55.5 bits (134), Expect = 3e-08
Identities = 42/129 (32%), Positives = 61/129 (47%), Gaps = 13/129 (10%)
Query: 965 LRGRTGSGKSTLIQTLFRIVESTAGHILIDGKDISLIGLHDLRTRLSIIPQDPTMFEGTT 1024
L G G+GKSTL++ + I+ T+G I+ DG + DL S+I P T
Sbjct: 31 LLGPNGAGKSTLLKMITGILRPTSGEIIFDGHPWT---RKDLHKIGSLIESPPLYENLTA 87
Query: 1025 RSNLD---PLEEHADEQIWEALDKCQLGDEVRKKKGK--LDSQGRV-----LLKKSKVLV 1074
R NL L D +I E L+ L + +KK + L + R+ LL K+L+
Sbjct: 88 RENLKVHTTLLGLPDSRIDEVLNIVDLTNTGKKKAKQFSLGMKQRLGIAIALLNHPKLLI 147
Query: 1075 LDEATASVD 1083
LDE T +D
Sbjct: 148 LDEPTNGLD 156
|
Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes. Length = 223 |
| >gnl|CDD|237651 PRK14266, PRK14266, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 55.7 bits (134), Expect = 3e-08
Identities = 46/172 (26%), Positives = 83/172 (48%), Gaps = 26/172 (15%)
Query: 965 LRGRTGSGKSTLIQTLFRIVE-----STAGHILIDGKDI--SLIGLHDLRTRLSIIPQDP 1017
L G +G GKST I+TL R+ + GHI +DG DI + + +LR ++ ++ Q P
Sbjct: 34 LIGPSGCGKSTFIRTLNRMNDLIPGFRHEGHIYLDGVDIYDPAVDVVELRKKVGMVFQKP 93
Query: 1018 TMFEGTTRSNL--------DPLEEHADEQIWEALDKCQLGDEVRKK--KGKLDSQG---- 1063
F + N+ + E+ +E++ E+L L DEV+ K K L G
Sbjct: 94 NPFPKSIFDNVAYGLRIHGEDDEDFIEERVEESLKAAALWDEVKDKLDKSALGLSGGQQQ 153
Query: 1064 -----RVLLKKSKVLVLDEATASVDTATDNQIQQTLRQHFSDCTVVTIAHRI 1110
R + +V+++DE +++D + +I+ + + D T+V + H +
Sbjct: 154 RLCIARTIAVSPEVILMDEPCSALDPISTTKIEDLIHKLKEDYTIVIVTHNM 205
|
Length = 250 |
| >gnl|CDD|226969 COG4618, ArpD, ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only] | Back alignment and domain information |
|---|
Score = 57.3 bits (139), Expect = 4e-08
Identities = 56/197 (28%), Positives = 86/197 (43%), Gaps = 28/197 (14%)
Query: 967 GRTGSGKSTLIQTLFRIVESTAGHILIDGKDISLIGLHDLRTRLSIIPQDPTMFEGTTRS 1026
G +GSGKSTL + L I T+G + +DG D+ L + +PQD +F+GT
Sbjct: 369 GPSGSGKSTLARLLVGIWPPTSGSVRLDGADLRQWDREQLGRHIGYLPQDVELFDGTIAE 428
Query: 1027 NLDPLEEHAD-EQIWEALDKCQLGDEVRK----------KKGKLDSQG--------RVLL 1067
N+ E AD E++ EA + + + + + G S G R L
Sbjct: 429 NIARFGEEADPEKVIEAARLAGVHELILRLPQGYDTRIGEGGATLSGGQRQRIALARALY 488
Query: 1068 KKSKVLVLDEATASVDT----ATDNQIQQTLRQHFSDCTVVTIAHRITSVLDSA-MVLLL 1122
++VLDE +++D+ A I + TVV IAHR S L S +L+L
Sbjct: 489 GDPFLVVLDEPNSNLDSEGEAALAAAILAAKAR---GGTVVVIAHRP-SALASVDKILVL 544
Query: 1123 NHGLIKEYDSPTKLLEN 1139
G I + ++L
Sbjct: 545 QDGRIAAFGPREEVLAK 561
|
Length = 580 |
| >gnl|CDD|224059 COG1136, SalX, ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 54.8 bits (133), Expect = 4e-08
Identities = 51/190 (26%), Positives = 88/190 (46%), Gaps = 32/190 (16%)
Query: 967 GRTGSGKSTLIQTLFRIVESTAGHILIDGKDISLIGLHDL----RTRLSIIPQD----PT 1018
G +GSGKSTL+ L + + T+G +LI+GKD++ + +L R ++ + Q+ P
Sbjct: 38 GPSGSGKSTLLNLLGGLDKPTSGEVLINGKDLTKLSEKELAKLRRKKIGFVFQNFNLLPD 97
Query: 1019 MFEGTTRSNLD-PLE------EHADEQIWEALDKCQLGDEVRKKKGKLDSQG-------- 1063
+ T N++ PL E L+ L D + KKK S G
Sbjct: 98 L---TVLENVELPLLIAGKSAGRRKRAAEELLEVLGLEDRLLKKKPSELSGGQQQRVAIA 154
Query: 1064 RVLLKKSKVLVLDEATASVDTATDNQIQQTLRQ--HFSDCTVVTIAH--RITSVLDSAMV 1119
R L+ K+++ DE T ++D+ T ++ + LR+ T++ + H + D V
Sbjct: 155 RALINNPKIILADEPTGNLDSKTAKEVLELLRELNKERGKTIIMVTHDPELAKYADR--V 212
Query: 1120 LLLNHGLIKE 1129
+ L G I+E
Sbjct: 213 IELKDGKIEE 222
|
Length = 226 |
| >gnl|CDD|183133 PRK11432, fbpC, ferric transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 56.7 bits (137), Expect = 4e-08
Identities = 65/216 (30%), Positives = 95/216 (43%), Gaps = 42/216 (19%)
Query: 373 NPTLRNINLKVFHGMRVAVCGTVGSGKSSCLSCILGGVPKESGIIRLCG---TKA----- 424
N + N+NL + G V + G G GK++ L + G G I + G T
Sbjct: 19 NTVIDNLNLTIKQGTMVTLLGPSGCGKTTVLRLVAGLEKPTEGQIFIDGEDVTHRSIQQR 78
Query: 425 ---YVAQS----PWIQSGKIEENILFGKEM----DRERYERVLEACSLKKDLEVLPFGDQ 473
V QS P + G EN+ +G +M ER +RV EA L DL F D+
Sbjct: 79 DICMVFQSYALFPHMSLG---ENVGYGLKMLGVPKEERKQRVKEALELV-DLA--GFEDR 132
Query: 474 TIIGERGINLSGGQKQRIQIARPLYQDADIFLLDDPFSPVDDHTGAHL-------FKFCW 526
+ +SGGQ+QR+ +AR L + L D+P S +D A+L +
Sbjct: 133 YVD-----QISGGQQQRVALARALILKPKVLLFDEPLSNLD----ANLRRSMREKIRELQ 183
Query: 527 VSSSKTVIYATH-QVEFLPAADLILVIKDGKITQAG 561
+ T +Y TH Q E +D ++V+ GKI Q G
Sbjct: 184 QQFNITSLYVTHDQSEAFAVSDTVIVMNKGKIMQIG 219
|
Length = 351 |
| >gnl|CDD|182592 PRK10619, PRK10619, histidine/lysine/arginine/ornithine transporter subunit; Provisional | Back alignment and domain information |
|---|
Score = 55.7 bits (134), Expect = 4e-08
Identities = 54/232 (23%), Positives = 95/232 (40%), Gaps = 48/232 (20%)
Query: 376 LRNINLKVFHGMRVAVCGTVGSGKSSCLSCI-LGGVPKESGI------IRLCGTK---AY 425
L+ ++L+ G +++ G+ GSGKS+ L CI P E I I L K
Sbjct: 21 LKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSEGSIVVNGQTINLVRDKDGQLK 80
Query: 426 VAQSPWIQSGKIE-----------------ENIL--------FGKEMDRERYERVLEACS 460
VA ++ + EN++ K+ RER + L
Sbjct: 81 VADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVLGLSKQEARERAVKYLAKVG 140
Query: 461 LKKDLEVLPFGDQTIIGERGINLSGGQKQRIQIARPLYQDADIFLLDDPFSPVDDHTGAH 520
+ D+ G+ ++LSGGQ+QR+ IAR L + ++ L D+P S +D
Sbjct: 141 I----------DERAQGKYPVHLSGGQQQRVSIARALAMEPEVLLFDEPTSALDPELVGE 190
Query: 521 LFKFC--WVSSSKTVIYATHQVEFLP-AADLILVIKDGKITQAGKYSDILNS 569
+ + KT++ TH++ F + ++ + GKI + G + +
Sbjct: 191 VLRIMQQLAEEGKTMVVVTHEMGFARHVSSHVIFLHQGKIEEEGAPEQLFGN 242
|
Length = 257 |
| >gnl|CDD|185336 PRK15439, PRK15439, autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional | Back alignment and domain information |
|---|
Score = 57.0 bits (138), Expect = 4e-08
Identities = 59/223 (26%), Positives = 99/223 (44%), Gaps = 50/223 (22%)
Query: 374 PTLRNINLKVFHGMRVAVCGTVGSGKSSCLSCILGGVPKESGIIRLCG--------TKAY 425
L+ I+ + G A+ G G+GKS+ + I G VP +SG + + G KA+
Sbjct: 25 EVLKGIDFTLHAGEVHALLGGNGAGKSTLMKIIAGIVPPDSGTLEIGGNPCARLTPAKAH 84
Query: 426 ------VAQSPWI---QSGKIEENILFGKEMDRERYERVLE-----ACSLKKD-----LE 466
V Q P + S ++ENILFG + +++ + C L D LE
Sbjct: 85 QLGIYLVPQEPLLFPNLS--VKENILFGLPKRQASMQKMKQLLAALGCQLDLDSSAGSLE 142
Query: 467 VLPFGDQTIIGERGINLSGGQKQRIQIARPLYQDADIFLLDDPFSPVDDHTGAHLFKFCW 526
V D+ Q ++I R L +D+ I +LD+P + + LF
Sbjct: 143 V---ADR---------------QIVEILRGLMRDSRILILDEPTASLTPAETERLFSRIR 184
Query: 527 VSSSKTV--IYATHQV-EFLPAADLILVIKDGKITQAGKYSDI 566
++ V ++ +H++ E AD I V++DG I +GK +D+
Sbjct: 185 ELLAQGVGIVFISHKLPEIRQLADRISVMRDGTIALSGKTADL 227
|
Length = 510 |
| >gnl|CDD|183063 PRK11264, PRK11264, putative amino-acid ABC transporter ATP-binding protein YecC; Provisional | Back alignment and domain information |
|---|
Score = 55.1 bits (133), Expect = 4e-08
Identities = 67/218 (30%), Positives = 99/218 (45%), Gaps = 42/218 (19%)
Query: 376 LRNINLKVFHGMRVAVCGTVGSGKSSCLSCI-LGGVPKESGIIRLCGTKAYVAQSPWIQS 434
L I+L+V G VA+ G GSGK++ L CI L P E+G IR+ A+S Q
Sbjct: 19 LHGIDLEVKPGEVVAIIGPSGSGKTTLLRCINLLEQP-EAGTIRVGDITIDTARSLSQQK 77
Query: 435 GKIE----------------------ENILFG----KEMDRERYERVLEACSLKKDL--E 466
G I ENI+ G K +E EA + ++L +
Sbjct: 78 GLIRQLRQHVGFVFQNFNLFPHRTVLENIIEGPVIVKGEPKE------EATARARELLAK 131
Query: 467 VLPFGDQTIIGERGINLSGGQKQRIQIARPLYQDADIFLLDDPFSPVD-DHTGAHLFKFC 525
V G +T R LSGGQ+QR+ IAR L ++ L D+P S +D + G L
Sbjct: 132 VGLAGKETSYPRR---LSGGQQQRVAIARALAMRPEVILFDEPTSALDPELVGEVLNTIR 188
Query: 526 WVSSSK-TVIYATHQVEFL-PAADLILVIKDGKITQAG 561
++ K T++ TH++ F AD + + G+I + G
Sbjct: 189 QLAQEKRTMVIVTHEMSFARDVADRAIFMDQGRIVEQG 226
|
Length = 250 |
| >gnl|CDD|224053 COG1129, MglA, ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Score = 56.8 bits (138), Expect = 5e-08
Identities = 44/183 (24%), Positives = 75/183 (40%), Gaps = 35/183 (19%)
Query: 963 LVLRGRTGSGKSTLIQTLFRIVESTAGHILIDGKDISLIGLHDLRTR-LSIIPQDPTMF- 1020
L G G+GKSTL++ L + +G ILIDGK ++ D ++ + Q+ ++
Sbjct: 37 HALLGENGAGKSTLMKILSGVYPPDSGEILIDGKPVAFSSPRDALAAGIATVHQELSLVP 96
Query: 1021 ------------EGTTRSN-LDPLEEHADEQIWEALDKCQLGDEVRKKKGKL---DSQG- 1063
E T R +D + E L + L + G L Q
Sbjct: 97 NLSVAENIFLGREPTRRFGLIDRKAMRRRAR--ELLARLGLDIDPDTLVGDLSIAQRQMV 154
Query: 1064 ---RVLLKKSKVLVLDEATASVDTATDNQIQQ------TLRQHFSDCTVVTIAHRITSVL 1114
R L ++VL+LDE TA++ T + ++ L+ ++ I+HR+ V
Sbjct: 155 EIARALSFDARVLILDEPTAAL---TVKETERLFDLIRRLKA--QGVAIIYISHRLDEVF 209
Query: 1115 DSA 1117
+ A
Sbjct: 210 EIA 212
|
Length = 500 |
| >gnl|CDD|213191 cd03224, ABC_TM1139_LivF_branched, ATP-binding cassette domain of branched-chain amino acid transporter | Back alignment and domain information |
|---|
Score = 54.4 bits (132), Expect = 6e-08
Identities = 35/130 (26%), Positives = 59/130 (45%), Gaps = 17/130 (13%)
Query: 967 GRTGSGKSTLIQTLFRIVESTAGHILIDGKDISLIGLHDLRTRLSI--IPQDPTMFEG-T 1023
GR G+GK+TL++T+ ++ +G I DG+DI+ + H+ R R I +P+ +F T
Sbjct: 33 GRNGAGKTTLLKTIMGLLPPRSGSIRFDGRDITGLPPHE-RARAGIGYVPEGRRIFPELT 91
Query: 1024 TRSNLD-----PLEEHADEQIWEALDKCQLGDEVRKKKGKLDS----Q----GRVLLKKS 1070
NL ++ + E RK+ S Q R L+ +
Sbjct: 92 VEENLLLGAYARRRAKRKARLERVYELFPRLKERRKQLAGTLSGGEQQMLAIARALMSRP 151
Query: 1071 KVLVLDEATA 1080
K+L+LDE +
Sbjct: 152 KLLLLDEPSE 161
|
LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. Length = 222 |
| >gnl|CDD|226617 COG4133, CcmA, ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 54.2 bits (131), Expect = 6e-08
Identities = 37/169 (21%), Positives = 58/169 (34%), Gaps = 23/169 (13%)
Query: 946 GEVNIRHLQVRYAPNLPLVLRGRTGSGKSTLIQTLFRIVESTAGHILIDGKDISLI---- 1001
L L + G G+GK+TL++ L ++ AG + G+ I +
Sbjct: 14 ERTLFSDLSFTLNAGEALQITGPNGAGKTTLLRILAGLLRPDAGEVYWQGEPIQNVRESY 73
Query: 1002 --GLHDLRTRLSIIPQDPTMFEGTTRSNL----DPLEEHADEQIWEALDKCQLGDEVRKK 1055
L L + I E T NL IWEAL + L
Sbjct: 74 HQALLYLGHQPGIKT------ELTALENLHFWQRFHGSGNAATIWEALAQVGLAGLEDLP 127
Query: 1056 KGKLDS--QGRV-----LLKKSKVLVLDEATASVDTATDNQIQQTLRQH 1097
G+L + Q RV L + + +LDE ++D + + H
Sbjct: 128 VGQLSAGQQRRVALARLWLSPAPLWILDEPFTALDKEGVALLTALMAAH 176
|
Length = 209 |
| >gnl|CDD|184205 PRK13646, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 55.2 bits (133), Expect = 6e-08
Identities = 53/227 (23%), Positives = 88/227 (38%), Gaps = 42/227 (18%)
Query: 376 LRNINLKVFHGMRVAVCGTVGSGKSSCLSCILGGVPKESGIIRLCG------TK------ 423
+ ++N + G A+ G GSGKS+ + I + +G + + TK
Sbjct: 23 IHDVNTEFEQGKYYAIVGQTGSGKSTLIQNINALLKPTTGTVTVDDITITHKTKDKYIRP 82
Query: 424 -----AYVAQSPWIQ--SGKIEENILFGKE---MD----RERYERVLEACSLKKD-LEVL 468
V Q P Q +E I+FG + M+ + R+L +D +
Sbjct: 83 VRKRIGMVFQFPESQLFEDTVEREIIFGPKNFKMNLDEVKNYAHRLLMDLGFSRDVMSQS 142
Query: 469 PFGDQTIIGERGINLSGGQKQRIQIARPLYQDADIFLLDDP---FSPVDDHTGAHLFKFC 525
PF +SGGQ ++I I L + DI +LD+P P L K
Sbjct: 143 PF-----------QMSGGQMRKIAIVSILAMNPDIIVLDEPTAGLDPQSKRQVMRLLKSL 191
Query: 526 WVSSSKTVIYATHQV-EFLPAADLILVIKDGKITQAGKYSDILNSGT 571
+KT+I +H + E AD ++V+K+G I ++
Sbjct: 192 QTDENKTIILVSHDMNEVARYADEVIVMKEGSIVSQTSPKELFKDKK 238
|
Length = 286 |
| >gnl|CDD|184195 PRK13635, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 55.0 bits (133), Expect = 7e-08
Identities = 52/192 (27%), Positives = 96/192 (50%), Gaps = 22/192 (11%)
Query: 967 GRTGSGKSTLIQTLFRIVESTAGHILIDGKDISLIGLHDLRTRLSIIPQDP-TMFEGTT- 1024
G GSGKSTL + L ++ AG I + G +S + D+R ++ ++ Q+P F G T
Sbjct: 40 GHNGSGKSTLAKLLNGLLLPEAGTITVGGMVLSEETVWDVRRQVGMVFQNPDNQFVGATV 99
Query: 1025 --------RSNLDPLEEHADEQIWEALDKCQLGDEVRKKKGKLDSQGR--------VLLK 1068
+ P EE E++ +AL + + D + ++ +L S G+ VL
Sbjct: 100 QDDVAFGLENIGVPREEMV-ERVDQALRQVGMEDFLNREPHRL-SGGQKQRVAIAGVLAL 157
Query: 1069 KSKVLVLDEATASVDTATDNQIQQTLRQ--HFSDCTVVTIAHRITSVLDSAMVLLLNHGL 1126
+ +++LDEAT+ +D ++ +T+RQ TV++I H + + V+++N G
Sbjct: 158 QPDIIILDEATSMLDPRGRREVLETVRQLKEQKGITVLSITHDLDEAAQADRVIVMNKGE 217
Query: 1127 IKEYDSPTKLLE 1138
I E +P ++ +
Sbjct: 218 ILEEGTPEEIFK 229
|
Length = 279 |
| >gnl|CDD|226617 COG4133, CcmA, ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 53.8 bits (130), Expect = 7e-08
Identities = 42/191 (21%), Positives = 77/191 (40%), Gaps = 32/191 (16%)
Query: 376 LRNINLKVFHGMRVAVCGTVGSGKSSCLSCILGGVPKESGIIRLCGT------KAYVAQS 429
+++ + G + + G G+GK++ L + G + ++G + G ++Y
Sbjct: 18 FSDLSFTLNAGEALQITGPNGAGKTTLLRILAGLLRPDAGEVYWQGEPIQNVRESYHQAL 77
Query: 430 PWI--QSG-----KIEENILFGKEM----DRERYERVLEACSLKKDLEVLPFGDQTIIGE 478
++ Q G EN+ F + + L L LE LP G
Sbjct: 78 LYLGHQPGIKTELTALENLHFWQRFHGSGNAATIWEALAQVGLA-GLEDLPVG------- 129
Query: 479 RGINLSGGQKQRIQIARPLYQDADIFLLDDPFSPVDDHTGA---HLFKFCWVSSSKTVIY 535
LS GQ++R+ +AR A +++LD+PF+ +D A L + V+
Sbjct: 130 ---QLSAGQQRRVALARLWLSPAPLWILDEPFTALDKEGVALLTALMA-AHAAQGGIVLL 185
Query: 536 ATHQVEFLPAA 546
THQ + +A
Sbjct: 186 TTHQPLPIASA 196
|
Length = 209 |
| >gnl|CDD|172741 PRK14253, PRK14253, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 54.8 bits (132), Expect = 7e-08
Identities = 65/233 (27%), Positives = 94/233 (40%), Gaps = 68/233 (29%)
Query: 369 FSSPNPTLRNINLKVFHGMRVAVCGTVGSGKSSCLSCI------LGGVPKESGIIRLCGT 422
F N L++INL + A+ G G GKS+ L C+ + GV K +G + + G
Sbjct: 12 FYGENQALKSINLPIPARQVTALIGPSGCGKSTLLRCLNRMNDLIEGV-KITGKLTMDGE 70
Query: 423 KAY--------------VAQSPWIQSGKIEENILFG---------KEMDRERYERVLEAC 459
Y V Q P I EN+ +G K +D E ER L
Sbjct: 71 DIYGNIDVADLRIKVGMVFQKPNPFPMSIYENVAYGLRAQGIKDKKVLD-EVVERSLRGA 129
Query: 460 SL----KKDLEVLPFGDQTIIGERGINLSGGQKQRIQIARPLYQDADIFLLDDPFSPVDD 515
+L K L+ FG LSGGQ+QR+ IAR + + D+ L+D+P S +D
Sbjct: 130 ALWDEVKDRLKSHAFG-----------LSGGQQQRLCIARTIAMEPDVILMDEPTSALDP 178
Query: 516 HTGAHLFKFCWVSSSKTVIYATHQVEFLP---AADLILVIKDGKITQAGKYSD 565
ATH++E L + +VI + QA + SD
Sbjct: 179 -------------------IATHKIEELMEELKKNYTIVIVTHSMQQARRISD 212
|
Length = 249 |
| >gnl|CDD|226963 COG4604, CeuD, ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 54.6 bits (132), Expect = 7e-08
Identities = 58/231 (25%), Positives = 98/231 (42%), Gaps = 54/231 (23%)
Query: 374 PTLRNINLKVFHGMRVAVCGTVGSGKSSCLSCILGGVPKESGIIRLCG------------ 421
L +++L + G ++ G G+GKS+ LS + + K+SG I + G
Sbjct: 15 VVLDDVSLDIPKGGITSIIGPNGAGKSTLLSMMSRLLKKDSGEITIDGLELTSTPSKELA 74
Query: 422 -TKAYVAQSPWIQSG-KIEENILFGK---------EMDRERYERVLEACSLKKDLEVLPF 470
+ + Q I S + + + FG+ + DR +E L+ DL
Sbjct: 75 KKLSILKQENHINSRLTVRDLVGFGRFPYSQGRLTKEDRRIINEAIEYLHLE-DLS---- 129
Query: 471 GDQTIIGERGIN-LSGGQKQRIQIARPLYQDADIFLLDDPFSPVD-DHT---------GA 519
+R ++ LSGGQ+QR IA L QD D LLD+P + +D H+ A
Sbjct: 130 -------DRYLDELSGGQRQRAFIAMVLAQDTDYVLLDEPLNNLDMKHSVQIMKILRRLA 182
Query: 520 HLFKFCWVSSSKTVIYATHQVEFLPA-ADLILVIKDGKITQAGKYSDILNS 569
KT++ H + F +D I+ +K+GK+ + G +I+
Sbjct: 183 DELG-------KTIVVVLHDINFASCYSDHIVALKNGKVVKQGSPDEIIQP 226
|
Length = 252 |
| >gnl|CDD|237419 PRK13536, PRK13536, nodulation factor exporter subunit NodI; Provisional | Back alignment and domain information |
|---|
Score = 55.6 bits (134), Expect = 7e-08
Identities = 75/311 (24%), Positives = 126/311 (40%), Gaps = 60/311 (19%)
Query: 329 LDRIASFLCLEGLQTDVLEKM---PRGNSDTAIEIIDGSFSWDFSSPNPTLRNINLKVFH 385
R +E + E P S AI++ S S+ + ++ V
Sbjct: 10 APRRLELSPIERKHQGISEAKASIPGSMSTVAIDLAGVSKSY---GDKAVVNGLSFTVAS 66
Query: 386 GMRVAVCGTVGSGKSSCLSCILGGVPKESGIIRLCG----TKAYVAQS-----PWIQSGK 436
G + G G+GKS+ ILG ++G I + G +A +A++ P +
Sbjct: 67 GECFGLLGPNGAGKSTIARMILGMTSPDAGKITVLGVPVPARARLARARIGVVPQFDNLD 126
Query: 437 IE----ENIL-FGK--EMDRERYERV----LEACSLKKDLEVLPFGDQTIIGERGINLSG 485
+E EN+L FG+ M E V LE L+ + R +LSG
Sbjct: 127 LEFTVRENLLVFGRYFGMSTREIEAVIPSLLEFARLESKADA-----------RVSDLSG 175
Query: 486 GQKQRIQIARPLYQDADIFLLDDPFSPVDDHTGAHLFKFCW------VSSSKTVIYATHQ 539
G K+R+ +AR L D + +LD+P + +D H HL W ++ KT++ TH
Sbjct: 176 GMKRRLTLARALINDPQLLILDEPTTGLDPH-ARHLI---WERLRSLLARGKTILLTTH- 230
Query: 540 VEFLPAA----DLILVIKDGKITQAGKYSDILNS--GTDFMELVGAHKQALSGLDSIDRG 593
F+ A D + V++ G+ G+ +++ G +E+ G LS L
Sbjct: 231 --FMEEAERLCDRLCVLEAGRKIAEGRPHALIDEHIGCQVIEIYGGDPHELSSL----VK 284
Query: 594 PVSERKSINKE 604
P + R ++ E
Sbjct: 285 PYARRIEVSGE 295
|
Length = 340 |
| >gnl|CDD|184209 PRK13650, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 54.7 bits (132), Expect = 8e-08
Identities = 54/191 (28%), Positives = 102/191 (53%), Gaps = 24/191 (12%)
Query: 967 GRTGSGKSTLIQTLFRIVESTAGHILIDGKDISLIGLHDLRTRLSIIPQDP-TMFEGTTR 1025
G GSGKST ++ + ++E+ +G I+IDG ++ + D+R ++ ++ Q+P F G T
Sbjct: 40 GHNGSGKSTTVRLIDGLLEAESGQIIIDGDLLTEENVWDIRHKIGMVFQNPDNQFVGATV 99
Query: 1026 SN-----LD----PLEEHADEQIWEALDKCQLGDEVRKKKGKLDSQG---RVLLK----- 1068
+ L+ P EE E++ EAL+ + D ++ +L S G RV +
Sbjct: 100 EDDVAFGLENKGIPHEEMK-ERVNEALELVGMQDFKEREPARL-SGGQKQRVAIAGAVAM 157
Query: 1069 KSKVLVLDEATASVDTATDNQIQQT---LRQHFSDCTVVTIAHRITSVLDSAMVLLLNHG 1125
+ K+++LDEAT+ +D ++ +T +R + TV++I H + V S VL++ +G
Sbjct: 158 RPKIIILDEATSMLDPEGRLELIKTIKGIRDDY-QMTVISITHDLDEVALSDRVLVMKNG 216
Query: 1126 LIKEYDSPTKL 1136
++ +P +L
Sbjct: 217 QVESTSTPREL 227
|
Length = 279 |
| >gnl|CDD|213180 cd03213, ABCG_EPDR, Eye pigment and drug resistance transporter subfamily G of the ATP-binding cassette superfamily | Back alignment and domain information |
|---|
Score = 53.3 bits (129), Expect = 8e-08
Identities = 47/201 (23%), Positives = 82/201 (40%), Gaps = 34/201 (16%)
Query: 366 SWDFSSPNPTLRNINLKVFHGMRVAVCGTVGSGKSSCLSCILG--GVPKESGIIRLCGTK 423
S S L+N++ K G A+ G G+GKS+ L+ + G SG + + G
Sbjct: 15 SSPSKSGKQLLKNVSGKAKPGELTAIMGPSGAGKSTLLNALAGRRTGLGVSGEVLINGRP 74
Query: 424 AYVAQSPWIQSGKI-EENILFGKEMDRERYERVLEACSLKKDLEVLPFGDQTIIGERGIN 482
+S G + +++IL V E L RG+
Sbjct: 75 LD-KRSFRKIIGYVPQDDILHP-------TLTVRETLMFAAKL-------------RGL- 112
Query: 483 LSGGQKQRIQIARPLYQDADIFLLDDPFSPVDDHTGAH----LFKFCWVSSSKTVIYATH 538
SGG+++R+ IA L + + LD+P S +D + L + + +T+I + H
Sbjct: 113 -SGGERKRVSIALELVSNPSLLFLDEPTSGLDSSSALQVMSLLRRLA--DTGRTIICSIH 169
Query: 539 QV--EFLPAADLILVIKDGKI 557
Q E D +L++ G++
Sbjct: 170 QPSSEIFELFDKLLLLSQGRV 190
|
ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus. Length = 194 |
| >gnl|CDD|224041 COG1116, TauB, ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 53.7 bits (130), Expect = 1e-07
Identities = 41/162 (25%), Positives = 73/162 (45%), Gaps = 24/162 (14%)
Query: 967 GRTGSGKSTLIQTLFRIVESTAGHILIDGKDISLIGLHDLRTRLSIIPQDPTMFEG-TTR 1025
G +G GKSTL++ + + + T+G +L+DG+ ++ G + + Q+ + T
Sbjct: 36 GPSGCGKSTLLRLIAGLEKPTSGEVLLDGRPVTGPGP-----DIGYVFQEDALLPWLTVL 90
Query: 1026 SNLD-PLE------EHADEQIWEALDKCQLGDEVRKKKGKLDSQG--------RVLLKKS 1070
N+ LE A E+ E L+ L K +L S G R L +
Sbjct: 91 DNVALGLELRGKSKAEARERAKELLELVGLAGFEDKYPHQL-SGGMRQRVAIARALATRP 149
Query: 1071 KVLVLDEATASVDTATDNQIQQTLRQ--HFSDCTVVTIAHRI 1110
K+L+LDE ++D T ++Q L + + TV+ + H +
Sbjct: 150 KLLLLDEPFGALDALTREELQDELLRLWEETRKTVLLVTHDV 191
|
Length = 248 |
| >gnl|CDD|226643 COG4175, ProV, ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 54.7 bits (132), Expect = 1e-07
Identities = 54/179 (30%), Positives = 89/179 (49%), Gaps = 29/179 (16%)
Query: 963 LVLRGRTGSGKSTLIQTLFRIVESTAGHILIDGKDISLIGLHDLRT----RLSIIPQDPT 1018
V+ G +GSGKSTL++ L R++E T G IL+DGKDI+ + +LR ++S++ Q
Sbjct: 57 FVIMGLSGSGKSTLVRLLNRLIEPTRGEILVDGKDIAKLSAAELRELRRKKISMVFQSFA 116
Query: 1019 MFEGTTRSNLD----PLE------EHADEQIWEALDKCQLGDEVRKKKGKLDS--QGRVL 1066
+ R+ L+ LE +E+ EAL+ L K +L Q RV
Sbjct: 117 LL--PHRTVLENVAFGLEVQGVPKAEREERALEALELVGLEGYADKYPNELSGGMQQRVG 174
Query: 1067 LKKS-----KVLVLDEATASVDTATDNQIQQTLRQHFSDC--TVVTIAHRITSVLDSAM 1118
L ++ +L++DEA +++D ++Q L + + T+V I H LD A+
Sbjct: 175 LARALANDPDILLMDEAFSALDPLIRTEMQDELLELQAKLKKTIVFITHD----LDEAL 229
|
Length = 386 |
| >gnl|CDD|213180 cd03213, ABCG_EPDR, Eye pigment and drug resistance transporter subfamily G of the ATP-binding cassette superfamily | Back alignment and domain information |
|---|
Score = 52.9 bits (128), Expect = 1e-07
Identities = 40/169 (23%), Positives = 70/169 (41%), Gaps = 32/169 (18%)
Query: 963 LVLRGRTGSGKSTLIQTL--FRIVESTAGHILIDGKDISLIGLHDLRTRLSIIPQDPTMF 1020
+ G +G+GKSTL+ L R +G +LI+G+ + R + +PQD +
Sbjct: 38 TAIMGPSGAGKSTLLNALAGRRTGLGVSGEVLINGRPLDK---RSFRKIIGYVPQDDILH 94
Query: 1021 EGTTRSNLDPLEEHADEQIWEALD---KCQ-LGDEVRKKKGKLDSQGRVLLKKSKVLVLD 1076
T + E L K + L RK+ S L+ +L LD
Sbjct: 95 PTLT--------------VRETLMFAAKLRGLSGGERKRV----SIALELVSNPSLLFLD 136
Query: 1077 EATASVDTATDNQIQQTLRQHFSD-CTVVTIAHR----ITSVLDSAMVL 1120
E T+ +D+++ Q+ LR+ T++ H+ I + D ++L
Sbjct: 137 EPTSGLDSSSALQVMSLLRRLADTGRTIICSIHQPSSEIFELFDKLLLL 185
|
ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus. Length = 194 |
| >gnl|CDD|226641 COG4172, COG4172, ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 55.7 bits (135), Expect = 1e-07
Identities = 65/235 (27%), Positives = 102/235 (43%), Gaps = 52/235 (22%)
Query: 953 LQVRYAPNLPLVLRGRTGSGKSTLIQTLFRIVESTAGHILIDGKDISLIGLHD-----LR 1007
L +R L LV G +GSGKSTL L R++ S G I DG+DI GL LR
Sbjct: 308 LTLRRGQTLGLV--GESGSGKSTLGLALLRLIPSQ-GEIRFDGQDID--GLSRKEMRPLR 362
Query: 1008 TRLSIIPQDPTMFEGTTRSNLDP-----------LEEHA--------DEQIWEALDKCQL 1048
R+ ++ QDP +L P L H D+++ EAL++ L
Sbjct: 363 RRMQVVFQDPY-------GSLSPRMTVGQIIEEGLRVHEPKLSAAERDQRVIEALEEVGL 415
Query: 1049 GDEVRKKKGKLDSQG--------RVLLKKSKVLVLDEATASVDTATDNQIQQTLR--QHF 1098
R + S G R L+ K ++++LDE T+++D + Q+ LR Q
Sbjct: 416 DPATRNRYPHEFSGGQRQRIAIARALILKPELILLDEPTSALDRSVQAQVLDLLRDLQQK 475
Query: 1099 SDCTVVTIAHRITSVLDSAM---VLLLNHGLIKEYDSPTKLLENKSSSFAQ-LVA 1149
+ + I+H + V A+ V+++ G I E + N + + L+A
Sbjct: 476 HGLSYLFISHDLAVV--RALCHRVIVMRDGKIVEQGPTEAVFANPQHEYTRALLA 528
|
Length = 534 |
| >gnl|CDD|172740 PRK14252, PRK14252, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 54.2 bits (130), Expect = 1e-07
Identities = 54/199 (27%), Positives = 89/199 (44%), Gaps = 42/199 (21%)
Query: 376 LRNINLKVFHGMRVAVCGTVGSGKSSCLSCI------------LGGV---PKESGI---- 416
L+NIN+ V A+ G G GKS+ L C G + P I
Sbjct: 32 LKNINMMVHEKQVTALIGPSGCGKSTFLRCFNRMHDLYPGNHYEGEIILHPDNVNILSPE 91
Query: 417 -----IRLCGTKAYVAQSPWIQSGKIEENILFG--------KEMDRERYERVLEACSLKK 463
+R+ + + +P+ +S I EN+ +G + + ER E L +L
Sbjct: 92 VDPIEVRMRISMVFQKPNPFPKS--IFENVAYGLRIRGVKRRSILEERVENALRNAALWD 149
Query: 464 DLEVLPFGDQTIIGERGINLSGGQKQRIQIARPLYQDADIFLLDDPFSPVDDHTGAHLFK 523
+++ D+ +G+ NLSGGQ+QR+ IAR L D +I L D+P S +D A + +
Sbjct: 150 EVK-----DR--LGDLAFNLSGGQQQRLCIARALATDPEILLFDEPTSALDPIATASIEE 202
Query: 524 FCWVSSSK-TVIYATHQVE 541
+K T++ TH ++
Sbjct: 203 LISDLKNKVTILIVTHNMQ 221
|
Length = 265 |
| >gnl|CDD|213232 cd03265, ABC_DrrA, Daunorubicin/doxorubicin resistance ATP-binding protein | Back alignment and domain information |
|---|
Score = 53.5 bits (129), Expect = 1e-07
Identities = 52/198 (26%), Positives = 87/198 (43%), Gaps = 35/198 (17%)
Query: 965 LRGRTGSGKSTLIQTLFRIVESTAGHILIDGKDISLIGLHDLRTRLSIIPQDPTMFEG-T 1023
L G G+GK+T I+ L +++ T+G + G D+ + ++R R+ I+ QD ++ + T
Sbjct: 31 LLGPNGAGKTTTIKMLTTLLKPTSGRATVAGHDV-VREPREVRRRIGIVFQDLSVDDELT 89
Query: 1024 TRSNLD--------PLEEHADEQIWEALDKCQLGDEVRKKKGKLDSQG--------RVLL 1067
NL P E E+I E LD L E + K S G R L+
Sbjct: 90 GWENLYIHARLYGVPGAE-RRERIDELLDFVGLL-EAADRLVKTYSGGMRRRLEIARSLV 147
Query: 1068 KKSKVLVLDEATASVDTATDNQ----IQQTLRQHFSDCTVVTIAHRITSVLDSA-----M 1118
+ +VL LDE T +D T I++ + T++ H ++ A
Sbjct: 148 HRPEVLFLDEPTIGLDPQTRAHVWEYIEKLKEEF--GMTILLTTH----YMEEAEQLCDR 201
Query: 1119 VLLLNHGLIKEYDSPTKL 1136
V +++HG I +P +L
Sbjct: 202 VAIIDHGRIIAEGTPEEL 219
|
DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 220 |
| >gnl|CDD|181939 PRK09544, znuC, high-affinity zinc transporter ATPase; Reviewed | Back alignment and domain information |
|---|
Score = 54.0 bits (130), Expect = 1e-07
Identities = 55/179 (30%), Positives = 81/179 (45%), Gaps = 32/179 (17%)
Query: 963 LVLRGRTGSGKSTLIQTLFRIVESTAGHILIDGKDISLIGLHDLRTRLSIIPQ----DPT 1018
L L G G+GKSTL++ + +V G I + + R+ +PQ D T
Sbjct: 33 LTLLGPNGAGKSTLVRVVLGLVAPDEGVI-----------KRNGKLRIGYVPQKLYLDTT 81
Query: 1019 MFEGTTR-SNLDPLEEHADEQIWEALDKCQLGDEVRKKKGKL---DSQ----GRVLLKKS 1070
+ R L P + D I AL + Q G + KL ++Q R LL +
Sbjct: 82 LPLTVNRFLRLRPGTKKED--ILPALKRVQAGHLIDAPMQKLSGGETQRVLLARALLNRP 139
Query: 1071 KVLVLDEATASVDT----ATDNQIQQTLRQHFSDCTVVTIAHRITSVL-DSAMVLLLNH 1124
++LVLDE T VD A + I Q LR+ DC V+ ++H + V+ + VL LNH
Sbjct: 140 QLLVLDEPTQGVDVNGQVALYDLIDQ-LRREL-DCAVLMVSHDLHLVMAKTDEVLCLNH 196
|
Length = 251 |
| >gnl|CDD|182692 PRK10744, pstB, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 54.2 bits (131), Expect = 1e-07
Identities = 49/178 (27%), Positives = 82/178 (46%), Gaps = 46/178 (25%)
Query: 967 GRTGSGKSTLIQTLFRIVE-----STAGHILIDGKDI--SLIGLHDLRTRLSIIPQDPT- 1018
G +G GKSTL++T R+ E G IL+DG++I + LR ++ ++ Q PT
Sbjct: 46 GPSGCGKSTLLRTFNRMYELYPEQRAEGEILLDGENILTPKQDIALLRAKVGMVFQKPTP 105
Query: 1019 --------------MFEGTTRSNLDPLEEHADEQIWEALDKCQLGDEVRKKKGKLDSQG- 1063
+FE +R+ +D E++ AL K L +EV K KL G
Sbjct: 106 FPMSIYDNIAFGVRLFEKLSRAEMD-------ERVEWALTKAALWNEV---KDKLHQSGY 155
Query: 1064 -------------RVLLKKSKVLVLDEATASVDTATDNQIQQTLRQHFSDCTVVTIAH 1108
R + + +VL+LDE +++D + +I++ + + D TVV + H
Sbjct: 156 SLSGGQQQRLCIARGIAIRPEVLLLDEPCSALDPISTGRIEELITELKQDYTVVIVTH 213
|
Length = 260 |
| >gnl|CDD|172743 PRK14255, PRK14255, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 54.2 bits (130), Expect = 1e-07
Identities = 53/182 (29%), Positives = 77/182 (42%), Gaps = 27/182 (14%)
Query: 357 AIEIIDGSFSWDFSSPNPTLRNINLKVFHGMRVAVCGTVGSGKSSCLSC----------- 405
A +II S F L+ I+L A+ G G GKS+ L
Sbjct: 2 AKKIITSSDVHLFYGKFEALKGIDLDFNQNEITALIGPSGCGKSTYLRTLNRMNDLIPGV 61
Query: 406 -ILGGV---------PKESGIIRLCGTKAYVAQSPWIQSGKIEENILFGKEMDRERYERV 455
I G V P E +++L V Q P I EN+++G + + + V
Sbjct: 62 TITGNVSLRGQNIYAPNED-VVQLRKQVGMVFQQPNPFPFSIYENVIYGLRLAGVKDKAV 120
Query: 456 LEAC---SLKKDLEVLPFGDQTIIGERGINLSGGQKQRIQIARPLYQDADIFLLDDPFSP 512
L+ SLK+ D + E ++LSGGQ+QR+ IAR L D+ LLD+P S
Sbjct: 121 LDEAVETSLKQAAIWDEVKDH--LHESALSLSGGQQQRVCIARVLAVKPDVILLDEPTSA 178
Query: 513 VD 514
+D
Sbjct: 179 LD 180
|
Length = 252 |
| >gnl|CDD|213188 cd03221, ABCF_EF-3, ATP-binding cassette domain of elongation factor 3, subfamily F | Back alignment and domain information |
|---|
Score = 51.7 bits (125), Expect = 1e-07
Identities = 45/202 (22%), Positives = 77/202 (38%), Gaps = 61/202 (30%)
Query: 358 IEIIDGSFSWDFSSPNPTLRNINLKVFHGMRVAVCGTVGSGKSSCLSCILGGVPKESGII 417
IE+ + S ++ L++I+L + G R+ + G G+GKS+ L I G + + GI+
Sbjct: 1 IELENLSKTYG---GKLLLKDISLTINPGDRIGLVGRNGAGKSTLLKLIAGELEPDEGIV 57
Query: 418 RLCGTK--AYVAQSPWIQSGKIEENILFGKEMDRERYERVLEACSLKKDLEVLPFGDQTI 475
T Y Q SG
Sbjct: 58 TWGSTVKIGYFEQ----LSG---------------------------------------- 73
Query: 476 IGERGINLSGGQKQRIQIARPLYQDADIFLLDDPFSPVDDHTGAHLFKFCWVSSSKTVIY 535
G+K R+ +A+ L ++ ++ LLD+P + +D + L + TVI
Sbjct: 74 ----------GEKMRLALAKLLLENPNLLLLDEPTNHLDLESIEALEEA-LKEYPGTVIL 122
Query: 536 ATHQVEFLPA-ADLILVIKDGK 556
+H FL A I+ ++DGK
Sbjct: 123 VSHDRYFLDQVATKIIELEDGK 144
|
Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions. Length = 144 |
| >gnl|CDD|184584 PRK14238, PRK14238, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 54.1 bits (130), Expect = 1e-07
Identities = 55/205 (26%), Positives = 88/205 (42%), Gaps = 33/205 (16%)
Query: 967 GRTGSGKSTLIQTLFRIVE-----STAGHILIDGKDI--SLIGLHDLRTRLSIIPQDPTM 1019
G +G GKST I+TL R+VE T G IL ++I + +LRT + ++ Q P
Sbjct: 57 GPSGCGKSTYIKTLNRMVELVPSVKTTGKILYRDQNIFDKSYSVEELRTNVGMVFQKPNP 116
Query: 1020 FEGTTRSN---------------LDPLEEHA--DEQIWEALDKCQLGDEVRKKKGKLDSQ 1062
F + N LD + E + IW+ L K +L D G +
Sbjct: 117 FPKSIYDNVTYGPKIHGIKDKKTLDEIVEKSLRGAAIWDEL-KDRLHDNAYGLSGGQQQR 175
Query: 1063 ---GRVLLKKSKVLVLDEATASVD---TATDNQIQQTLRQHFSDCTVVTIAHRITSVLDS 1116
R L + V+++DE T+++D T ++ Q L++ +S V + + D
Sbjct: 176 LCIARCLAIEPDVILMDEPTSALDPISTLKVEELVQELKKDYSIIIVTHNMQQAARISDK 235
Query: 1117 AMVLLLNHGLIKEYDSPTKLLENKS 1141
L +G + EYD K+ N S
Sbjct: 236 TAFFL--NGYVNEYDDTDKIFSNPS 258
|
Length = 271 |
| >gnl|CDD|213260 cd03293, ABC_NrtD_SsuB_transporters, ATP-binding cassette domain of the nitrate and sulfonate transporters | Back alignment and domain information |
|---|
Score = 52.5 bits (127), Expect = 2e-07
Identities = 42/166 (25%), Positives = 68/166 (40%), Gaps = 32/166 (19%)
Query: 967 GRTGSGKSTLIQTLFRIVESTAGHILIDGKDISLIGLHDLRTRLSIIPQDPTMFEGTTRS 1026
G +G GKSTL++ + + T+G +L+DG+ ++ + Q + +
Sbjct: 37 GPSGCGKSTLLRIIAGLERPTSGEVLVDGEPVT-----GPGPDRGYVFQQDALLP--WLT 89
Query: 1027 NLD----PLE------EHADEQIWEALDKCQLGDEVRKKKGKLDSQG--------RVLLK 1068
LD LE A E+ E L+ L +L S G R L
Sbjct: 90 VLDNVALGLELQGVPKAEARERAEELLELVGLSGFENAYPHQL-SGGMRQRVALARALAV 148
Query: 1069 KSKVLVLDEATASVDTATDNQIQQTL----RQHFSDCTVVTIAHRI 1110
VL+LDE +++D T Q+Q+ L R+ TV+ + H I
Sbjct: 149 DPDVLLLDEPFSALDALTREQLQEELLDIWRET--GKTVLLVTHDI 192
|
NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 220 |
| >gnl|CDD|130254 TIGR01186, proV, glycine betaine/L-proline transport ATP binding subunit | Back alignment and domain information |
|---|
Score = 54.1 bits (130), Expect = 2e-07
Identities = 56/211 (26%), Positives = 101/211 (47%), Gaps = 32/211 (15%)
Query: 963 LVLRGRTGSGKSTLIQTLFRIVESTAGHILIDGKDISLIGLHDL----RTRLSIIPQDPT 1018
V+ G +GSGKST ++ L R++E TAG I IDG++I +L R ++ ++ Q
Sbjct: 22 FVIMGLSGSGKSTTVRMLNRLIEPTAGQIFIDGENIMKQSPVELREVRRKKIGMVFQQFA 81
Query: 1019 MFEGTT---RSNLDPL-----EEHADEQIWEALDKCQLGDEVRKKKGKLDSQG------- 1063
+F T ++L P E+ E+ E L L + + +L S G
Sbjct: 82 LFPHMTILQNTSLGPELLGWPEQERKEKALELLKLVGLEEYEHRYPDEL-SGGMQQRVGL 140
Query: 1064 -RVLLKKSKVLVLDEATASVDTATDNQIQQTLR--QHFSDCTVVTIAHRITSVLDSAM-- 1118
R L + +L++DEA +++D + +Q L+ Q T+V I H LD A+
Sbjct: 141 ARALAAEPDILLMDEAFSALDPLIRDSMQDELKKLQATLQKTIVFITHD----LDEAIRI 196
Query: 1119 ---VLLLNHGLIKEYDSPTKLLENKSSSFAQ 1146
++++ G I + +P ++L N ++ + +
Sbjct: 197 GDRIVIMKAGEIVQVGTPDEILRNPANEYVE 227
|
This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lactis functionally complements an E.coli proU mutant. The comlementing locus is similar to a opuA locus in B.sutlis. This clarifies the differences in nomenclature [Transport and binding proteins, Amino acids, peptides and amines]. Length = 363 |
| >gnl|CDD|131721 TIGR02673, FtsE, cell division ATP-binding protein FtsE | Back alignment and domain information |
|---|
Score = 52.6 bits (127), Expect = 2e-07
Identities = 47/190 (24%), Positives = 85/190 (44%), Gaps = 34/190 (17%)
Query: 963 LVLRGRTGSGKSTLIQTLFRIVESTAGHILIDGKDISLIGLHD-----LRTRLSIIPQD- 1016
L L G +G+GK+TL++ L+ + + G + I G+D++ L LR R+ ++ QD
Sbjct: 31 LFLTGPSGAGKTTLLKLLYGALTPSRGQVRIAGEDVN--RLRGRQLPLLRRRIGVVFQDF 88
Query: 1017 ---PTMFEGTTRSNLD-PLE------EHADEQIWEALDKCQLGDEVRKKKGKLDSQG--- 1063
P T N+ PLE ++ AL + L + +L S G
Sbjct: 89 RLLPDR---TVYENVALPLEVRGKKEREIQRRVGAALRQVGLEHKADAFPEQL-SGGEQQ 144
Query: 1064 -----RVLLKKSKVLVLDEATASVDTATDNQIQQTLRQ-HFSDCTVVTIAHRITSVLD-- 1115
R ++ +L+ DE T ++D +I L++ + TV+ H S++D
Sbjct: 145 RVAIARAIVNSPPLLLADEPTGNLDPDLSERILDLLKRLNKRGTTVIVATHD-LSLVDRV 203
Query: 1116 SAMVLLLNHG 1125
+ V++L+ G
Sbjct: 204 AHRVIILDDG 213
|
This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein [Cellular processes, Cell division]. Length = 214 |
| >gnl|CDD|172750 PRK14262, PRK14262, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 53.4 bits (128), Expect = 2e-07
Identities = 59/221 (26%), Positives = 102/221 (46%), Gaps = 35/221 (15%)
Query: 376 LRNINLKVFHGMRVAVCGTVGSGKSSCLSCIL---GGVP--KESGIIRLCGTKAY----- 425
++N+ +K+F A+ G G GK++ L I +P + G I G Y
Sbjct: 19 VKNVTMKIFKNQITAIIGPSGCGKTTLLRSINRMNDHIPGFRVEGKIYFKGQDIYDPQLD 78
Query: 426 ----------VAQSPWIQSGKIEENILFGKEM----DRERYERVLEACSLKKDL---EVL 468
V Q P I +N+ FG + + + +R++E SLKK EV
Sbjct: 79 VTEYRKKVGMVFQKPTPFPMSIYDNVAFGPRIHGVKSKHKLDRIVEE-SLKKAALWDEV- 136
Query: 469 PFGDQTIIGERGINLSGGQKQRIQIARPLYQDADIFLLDDPFSPVDDHTGAHLFKFC-WV 527
++ + + G LSGGQ+QR+ IAR L + ++ LLD+P S +D + K +
Sbjct: 137 ----KSELNKPGTRLSGGQQQRLCIARALAVEPEVILLDEPTSALDPIATQRIEKLLEEL 192
Query: 528 SSSKTVIYATHQV-EFLPAADLILVIKDGKITQAGKYSDIL 567
S + T++ TH + + + AD I + G++ + G +I+
Sbjct: 193 SENYTIVIVTHNIGQAIRIADYIAFMYRGELIEYGPTREIV 233
|
Length = 250 |
| >gnl|CDD|237649 PRK14254, PRK14254, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 54.0 bits (130), Expect = 2e-07
Identities = 54/205 (26%), Positives = 84/205 (40%), Gaps = 55/205 (26%)
Query: 390 AVCGTVGSGKSSCLSCI-----LGGVPKESGIIRLCGTKAY---------------VAQS 429
A+ G G GKS+ L CI L + G + G Y V Q
Sbjct: 69 AMIGPSGCGKSTFLRCINRMNDLIDAARVEGELTFRGKNVYDADVDPVALRRRIGMVFQK 128
Query: 430 PWIQSGKIEENILFGKEMD------RERYERVLEACSLKKDLEVLPFGDQTIIGERGINL 483
P I +N+ +G ++ ER E L +L +++ DQ + G++L
Sbjct: 129 PNPFPKSIYDNVAYGLKIQGYDGDIDERVEESLRRAALWDEVK-----DQ--LDSSGLDL 181
Query: 484 SGGQKQRIQIARPLYQDADIFLLDDPFSPVDDHTGAHLFKFCWVSSSKTVIYATHQVEFL 543
SGGQ+QR+ IAR + D ++ L+D+P S +D AT ++E L
Sbjct: 182 SGGQQQRLCIARAIAPDPEVILMDEPASALDP-------------------VATSKIEDL 222
Query: 544 P---AADLILVIKDGKITQAGKYSD 565
A + +VI + QA + SD
Sbjct: 223 IEELAEEYTVVIVTHNMQQAARISD 247
|
Length = 285 |
| >gnl|CDD|172730 PRK14242, PRK14242, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 53.6 bits (129), Expect = 2e-07
Identities = 50/174 (28%), Positives = 74/174 (42%), Gaps = 35/174 (20%)
Query: 369 FSSPNPTLRNINLKVFHGMRVAVCGTVGSGKSSCLSCI-----LGGVPKESGIIRLCGTK 423
F L +I+L+ A+ G G GKS+ L C+ L + G I L G
Sbjct: 15 FYGDFQALHDISLEFEQNQVTALIGPSGCGKSTFLRCLNRMNDLIPGARVEGEILLDGEN 74
Query: 424 AY---------------VAQSPWIQSGKIEENILFG--------KEMDRERYERVLEACS 460
Y V Q P I EN+ +G K ER ER L +
Sbjct: 75 IYDPHVDVVELRRRVGMVFQKPNPFPKSIFENVAYGLRVNGVKDKAYLAERVERSLRHAA 134
Query: 461 LKKDLEVLPFGDQTIIGERGINLSGGQKQRIQIARPLYQDADIFLLDDPFSPVD 514
L +++ D+ + E + LSGGQ+QR+ IAR L + ++ L+D+P S +D
Sbjct: 135 LWDEVK-----DR--LHESALGLSGGQQQRLCIARALAVEPEVLLMDEPASALD 181
|
Length = 253 |
| >gnl|CDD|182817 PRK10895, PRK10895, lipopolysaccharide ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 53.4 bits (128), Expect = 2e-07
Identities = 53/198 (26%), Positives = 95/198 (47%), Gaps = 25/198 (12%)
Query: 965 LRGRTGSGKSTLIQTLFRIVESTAGHILIDGKDISLIGLHDLRTRLSI--IPQDPTMFEG 1022
L G G+GK+T + IV AG+I+ID +DISL+ LH R R I +PQ+ ++F
Sbjct: 34 LLGPNGAGKTTTFYMVVGIVPRDAGNIIIDDEDISLLPLHA-RARRGIGYLPQEASIFRR 92
Query: 1023 -TTRSNL--------DPLEEHADEQIWEALDKCQLGDEVRKKKGKLDSQG--------RV 1065
+ NL D E +++ E +++ + + +R G+ S G R
Sbjct: 93 LSVYDNLMAVLQIRDDLSAEQREDRANELMEEFHI-EHLRDSMGQSLSGGERRRVEIARA 151
Query: 1066 LLKKSKVLVLDEATASVDTATDNQIQQTLRQHFSD--CTVVTIAHRITSVLD-SAMVLLL 1122
L K ++LDE A VD + I++ + +H D V+ H + L ++
Sbjct: 152 LAANPKFILLDEPFAGVDPISVIDIKRII-EHLRDSGLGVLITDHNVRETLAVCERAYIV 210
Query: 1123 NHGLIKEYDSPTKLLENK 1140
+ G + + +PT++L+++
Sbjct: 211 SQGHLIAHGTPTEILQDE 228
|
Length = 241 |
| >gnl|CDD|132050 TIGR03005, ectoine_ehuA, ectoine/hydroxyectoine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 53.3 bits (128), Expect = 2e-07
Identities = 54/221 (24%), Positives = 90/221 (40%), Gaps = 32/221 (14%)
Query: 376 LRNINLKVFHGMRVAVCGTVGSGKSSCLSCILGGVPKESGIIRLCGTKAYVAQS---PWI 432
L +N V G +VA+ G GSGKS+ L ++ P + G I++ G + Y P +
Sbjct: 16 LDGLNFSVAAGEKVALIGPSGSGKSTILRILMTLEPIDEGQIQVEGEQLYHMPGRNGPLV 75
Query: 433 QSG-----KIEENI-----LFGKEMDRERYERVLEACSLKKD-------------LEVLP 469
+ ++ I F + + V EA L L+++
Sbjct: 76 PADEKHLRQMRNKIGMVFQSFNLFPHKTVLDNVTEAPVLVLGMARAEAEKRAMELLDMVG 135
Query: 470 FGDQTIIGERGINLSGGQKQRIQIARPLYQDADIFLLDDPFSPVDDHTGAHLFKFCWVSS 529
D+ LSGGQ+QR+ IAR L + L D+ S +D + +
Sbjct: 136 LADKA--DHMPAQLSGGQQQRVAIARALAMRPKVMLFDEVTSALDPELVGEVLNVIRRLA 193
Query: 530 SK---TVIYATHQVEFL-PAADLILVIKDGKITQAGKYSDI 566
S+ T++ TH++ F AD + G+I + GK +I
Sbjct: 194 SEHDLTMLLVTHEMGFAREFADRVCFFDKGRIVEQGKPDEI 234
|
Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins. Length = 252 |
| >gnl|CDD|172759 PRK14271, PRK14271, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 53.6 bits (128), Expect = 2e-07
Identities = 53/213 (24%), Positives = 96/213 (45%), Gaps = 29/213 (13%)
Query: 965 LRGRTGSGKSTLIQTLFRIVESTAGH-----ILIDGKDI-SLIGLHDLRTRLSIIPQDPT 1018
L G TGSGK+T ++TL R+ + +G+ +L+ G+ I + + + R R+ ++ Q P
Sbjct: 52 LMGPTGSGKTTFLRTLNRMNDKVSGYRYSGDVLLGGRSIFNYRDVLEFRRRVGMLFQRPN 111
Query: 1019 MF---------EGTTRSNLDPLEEH--------ADEQIWEALDKCQLGDEVRKKKG---K 1058
F G L P +E + +W+A+ K +L D + G +
Sbjct: 112 PFPMSIMDNVLAGVRAHKLVPRKEFRGVAQARLTEVGLWDAV-KDRLSDSPFRLSGGQQQ 170
Query: 1059 LDSQGRVLLKKSKVLVLDEATASVDTATDNQIQQTLRQHFSDCTVVTIAHRITSV--LDS 1116
L R L +VL+LDE T+++D T +I++ +R TV+ + H + +
Sbjct: 171 LLCLARTLAVNPEVLLLDEPTSALDPTTTEKIEEFIRSLADRLTVIIVTHNLAQAARISD 230
Query: 1117 AMVLLLNHGLIKEYDSPTKLLENKSSSFAQLVA 1149
L + L++E + K + A+ VA
Sbjct: 231 RAALFFDGRLVEEGPTEQLFSSPKHAETARYVA 263
|
Length = 276 |
| >gnl|CDD|182331 PRK10247, PRK10247, putative ABC transporter ATP-binding protein YbbL; Provisional | Back alignment and domain information |
|---|
Score = 52.8 bits (127), Expect = 2e-07
Identities = 42/133 (31%), Positives = 71/133 (53%), Gaps = 13/133 (9%)
Query: 964 VLRGRTGSGKSTLIQTLFRIVESTAGHILIDGKDISLIGLHDLRTRLSIIPQDPTMFEGT 1023
++ G +G GKSTL++ + ++ T+G +L +G+DIS + R ++S Q PT+F T
Sbjct: 37 LITGPSGCGKSTLLKIVASLISPTSGTLLFEGEDISTLKPEIYRQQVSYCAQTPTLFGDT 96
Query: 1024 TRSNLD-PLE---EHADEQIWEA-LDKCQLGDEVRKKKGKLDSQG---RVLLKKS----- 1070
NL P + + D I+ L++ L D + K S G R+ L ++
Sbjct: 97 VYDNLIFPWQIRNQQPDPAIFLDDLERFALPDTILTKNIAELSGGEKQRISLIRNLQFMP 156
Query: 1071 KVLVLDEATASVD 1083
KVL+LDE T+++D
Sbjct: 157 KVLLLDEITSALD 169
|
Length = 225 |
| >gnl|CDD|237646 PRK14237, PRK14237, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 53.2 bits (128), Expect = 2e-07
Identities = 53/223 (23%), Positives = 94/223 (42%), Gaps = 40/223 (17%)
Query: 965 LRGRTGSGKSTLIQTLFRI-----VESTAGHILIDGKDISL--IGLHDLRTRLSIIPQDP 1017
L G +GSGKST +++L R+ + G IL G DI+ I ++++R + ++ Q P
Sbjct: 51 LIGPSGSGKSTYLRSLNRMNDTIDIARVTGQILYRGIDINRKEINVYEMRKHIGMVFQRP 110
Query: 1018 TMFEGTTRSNLD-PLEEHA-------DEQIWEALDKCQLGDEVRKKKGK--LDSQG---- 1063
F + N+ LE DE + +L + L D+V+ K L G
Sbjct: 111 NPFAKSIYENITFALERAGVKDKKVLDEIVETSLKQAALWDQVKDDLHKSALTLSGGQQQ 170
Query: 1064 -----RVLLKKSKVLVLDEATASVDTATDNQIQQTLRQHFSDCTVVTIAH------RITS 1112
R + K +L++DE +++D + Q+++T+ + + T++ + H R
Sbjct: 171 RLCIARAIAVKPDILLMDEPASALDPISTMQLEETMFELKKNYTIIIVTHNMQQAARA-- 228
Query: 1113 VLDSAMVLLLNHGLIKEYDSPTKLLENKSSSFAQLVAEYTSSS 1155
S G + EYD + N Q +Y S
Sbjct: 229 ---SDYTAFFYLGDLIEYDKTRNIFTNPK---LQSTNDYVSGH 265
|
Length = 267 |
| >gnl|CDD|184203 PRK13643, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 53.6 bits (128), Expect = 2e-07
Identities = 60/244 (24%), Positives = 108/244 (44%), Gaps = 44/244 (18%)
Query: 364 SFSWDFSSP--NPTLRNINLKVFHGMRVAVCGTVGSGKSSCLSCILGGVPKESGIIRL-- 419
++++ +SP + L +I+L+V G A+ G GSGKS+ L + G + G + +
Sbjct: 8 NYTYQPNSPFASRALFDIDLEVKKGSYTALIGHTGSGKSTLLQHLNGLLQPTEGKVTVGD 67
Query: 420 ---CGTKAYVAQSP----------WIQSGKIEENIL----FGKE---MDRERYERV---- 455
T P + +S EE +L FG + + +E+ E++
Sbjct: 68 IVVSSTSKQKEIKPVRKKVGVVFQFPESQLFEETVLKDVAFGPQNFGIPKEKAEKIAAEK 127
Query: 456 LEACSLKKDL-EVLPFGDQTIIGERGINLSGGQKQRIQIARPLYQDADIFLLDDPFSPVD 514
LE L + E PF LSGGQ +R+ IA L + ++ +LD+P + +D
Sbjct: 128 LEMVGLADEFWEKSPF-----------ELSGGQMRRVAIAGILAMEPEVLVLDEPTAGLD 176
Query: 515 DHTGAHLFKF--CWVSSSKTVIYATHQVEFLPA-ADLILVIKDGKITQAGKYSDILNSGT 571
+ + S +TV+ TH ++ + AD + +++ G I G SD+
Sbjct: 177 PKARIEMMQLFESIHQSGQTVVLVTHLMDDVADYADYVYLLEKGHIISCGTPSDVFQE-V 235
Query: 572 DFME 575
DF++
Sbjct: 236 DFLK 239
|
Length = 288 |
| >gnl|CDD|172757 PRK14269, PRK14269, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 53.1 bits (127), Expect = 2e-07
Identities = 44/169 (26%), Positives = 83/169 (49%), Gaps = 23/169 (13%)
Query: 965 LRGRTGSGKSTLIQTLFRIVESTA---GHILIDGKDISLIGLHDLRTRLSIIPQDPTMFE 1021
L G +G GKST ++ R+ + A G + I+GKD+ + LR + ++ Q P +F
Sbjct: 33 LIGASGCGKSTFLRCFNRMNDKIAKIDGLVEIEGKDVKNQDVVALRKNVGMVFQQPNVFV 92
Query: 1022 GTTRSN------LDPLEEHADEQ---IWEALDKCQLGDEVRKK--KGKLDSQG------- 1063
+ N L + ++ DE+ + + L K L +EV+ K + L G
Sbjct: 93 KSIYENISYAPKLHGMIKNKDEEEALVVDCLQKVGLFEEVKDKLKQNALALSGGQQQRLC 152
Query: 1064 --RVLLKKSKVLVLDEATASVDTATDNQIQQTLRQHFSDCTVVTIAHRI 1110
R L K K+L+LDE T+++D + I++ L++ + +++ + H +
Sbjct: 153 IARALAIKPKLLLLDEPTSALDPISSGVIEELLKELSHNLSMIMVTHNM 201
|
Length = 246 |
| >gnl|CDD|213217 cd03250, ABCC_MRP_domain1, ATP-binding cassette domain 1 of multidrug resistance-associated protein, subfamily C | Back alignment and domain information |
|---|
Score = 51.7 bits (125), Expect = 3e-07
Identities = 36/179 (20%), Positives = 75/179 (41%), Gaps = 33/179 (18%)
Query: 967 GRTGSGKSTLIQTLFRIVESTAGHILIDGKDISLIGLHDLRTRLSIIPQDPTMFEGTTRS 1026
G GSGKS+L+ L +E +G + + G ++ + Q+P + GT R
Sbjct: 38 GPVGSGKSSLLSALLGELEKLSGSVSVPG-------------SIAYVSQEPWIQNGTIRE 84
Query: 1027 NLDPLEEHADEQIWEALDKCQL---------GDEVR-KKKGKLDSQG--------RVLLK 1068
N+ + +E+ + + C L GD +KG S G R +
Sbjct: 85 NILFGKPFDEERYEKVIKACALEPDLEILPDGDLTEIGEKGINLSGGQKQRISLARAVYS 144
Query: 1069 KSKVLVLDEATASVDTATDNQI-QQTLRQHFSDC-TVVTIAHRITSVLDSAMVLLLNHG 1125
+ + +LD+ ++VD I + + + T + + H++ + + +++L++G
Sbjct: 145 DADIYLLDDPLSAVDAHVGRHIFENCILGLLLNNKTRILVTHQLQLLPHADQIVVLDNG 203
|
This subfamily is also known as MRP (multidrug resistance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate. Length = 204 |
| >gnl|CDD|226361 COG3842, PotA, ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 53.4 bits (129), Expect = 3e-07
Identities = 51/209 (24%), Positives = 98/209 (46%), Gaps = 28/209 (13%)
Query: 963 LVLRGRTGSGKSTLIQTLFRIVESTAGHILIDGKDISLIGLHDLRTRLSIIPQDPTMFEG 1022
+ L G +G GK+TL++ + + ++G IL+DG+DI+ + + + ++ Q +F
Sbjct: 34 VTLLGPSGCGKTTLLRMIAGFEQPSSGEILLDGEDIT--DVPPEKRPIGMVFQSYALFPH 91
Query: 1023 TT---------RSNLDPLEEHADEQIWEALDKCQLGDEVRKKKGKLDS--QGRV-----L 1066
T + + ++ EAL+ L +K +L Q RV L
Sbjct: 92 MTVEENVAFGLKVRKKLKKAEIKARVEEALELVGLEGFADRKPHQLSGGQQQRVALARAL 151
Query: 1067 LKKSKVLVLDEATASVDTATDNQIQQTLR--QHFSDCTVVTIAHRITSVLDSAM---VLL 1121
+ + KVL+LDE +++D Q+++ L+ Q T V + H L AM + +
Sbjct: 152 VPEPKVLLLDEPLSALDAKLREQMRKELKELQRELGITFVYVTHDQEEAL--AMSDRIAV 209
Query: 1122 LNHGLIKEYDSPTKLLENKSSSFAQLVAE 1150
+N G I++ +P ++ E ++ F VA+
Sbjct: 210 MNDGRIEQVGTPEEIYERPATRF---VAD 235
|
Length = 352 |
| >gnl|CDD|213264 cd03297, ABC_ModC_molybdenum_transporter, ATP-binding cassette domain of the molybdenum transport system | Back alignment and domain information |
|---|
Score = 52.3 bits (126), Expect = 3e-07
Identities = 37/163 (22%), Positives = 73/163 (44%), Gaps = 18/163 (11%)
Query: 952 HLQVRY-APNLPLVLRGRTGSGKSTLIQTLFRIVESTAGHILIDGK---DISL-IGLHDL 1006
L++ + + G +G+GKSTL++ + + + G I+++G D I L
Sbjct: 14 TLKIDFDLNEEVTGIFGASGAGKSTLLRCIAGLEKPDGGTIVLNGTVLFDSRKKINLPPQ 73
Query: 1007 RTRLSIIPQDPTMFEG-TTRSNLD-PLEEHADEQIW----EALDKCQLGDEVRKKKGKL- 1059
+ ++ ++ Q +F R NL L+ + + E LD L + + +L
Sbjct: 74 QRKIGLVFQQYALFPHLNVRENLAFGLKRKRNREDRISVDELLDLLGLDHLLNRYPAQLS 133
Query: 1060 --DSQ----GRVLLKKSKVLVLDEATASVDTATDNQIQQTLRQ 1096
+ Q R L + ++L+LDE +++D A Q+ L+Q
Sbjct: 134 GGEKQRVALARALAAQPELLLLDEPFSALDRALRLQLLPELKQ 176
|
ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 214 |
| >gnl|CDD|213190 cd03223, ABCD_peroxisomal_ALDP, ATP-binding cassette domain of peroxisomal transporter, subfamily D | Back alignment and domain information |
|---|
Score = 51.0 bits (123), Expect = 3e-07
Identities = 43/191 (22%), Positives = 77/191 (40%), Gaps = 41/191 (21%)
Query: 369 FSSPN--PTLRNINLKVFHGMRVAVCGTVGSGKSSCLSCILGGV-PKESG-IIRLCGTK- 423
++P+ L++++ ++ G R+ + G G+GKSS L G+ P SG I G
Sbjct: 8 LATPDGRVLLKDLSFEIKPGDRLLITGPSGTGKSSLFR-ALAGLWPWGSGRIGMPEGEDL 66
Query: 424 AYVAQSPWIQSGKIEENILFGKEMDRERYERVLEACSLKKDLEVLPFGDQTIIGERGINL 483
++ Q P++ G + E +++ P+ D L
Sbjct: 67 LFLPQRPYLPLGTLREQLIY-------------------------PWDD---------VL 92
Query: 484 SGGQKQRIQIARPLYQDADIFLLDDPFSPVDDHTGAHLFKFCWVSSSKTVIYATHQVEFL 543
SGG++QR+ AR L LD+ S +D+ + L++ TVI H+
Sbjct: 93 SGGEQQRLAFARLLLHKPKFVFLDEATSALDEESEDRLYQLL-KELGITVISVGHRPSLW 151
Query: 544 PAADLILVIKD 554
D +L +
Sbjct: 152 KFHDRVLDLDG 162
|
Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asymptomatic). Length = 166 |
| >gnl|CDD|236554 PRK09536, btuD, corrinoid ABC transporter ATPase; Reviewed | Back alignment and domain information |
|---|
Score = 53.7 bits (129), Expect = 3e-07
Identities = 44/153 (28%), Positives = 67/153 (43%), Gaps = 25/153 (16%)
Query: 952 HLQVRYAPNLPLVLRGRTGSGKSTLIQTLFRIVESTAGHILIDGKDISLIGLHDLRTRLS 1011
L VR + LV G G+GK+TL++ + + TAG +L+ G D+ + R++
Sbjct: 23 DLSVREGSLVGLV--GPNGAGKTTLLRAINGTLTPTAGTVLVAGDDVEALSARAASRRVA 80
Query: 1012 IIPQDPTM-FEGTTR--------------SNLDPLEEHADEQIWEALDKCQLGDE-VRKK 1055
+PQD ++ FE R + A E+ E Q D V
Sbjct: 81 SVPQDTSLSFEFDVRQVVEMGRTPHRSRFDTWTETDRAAVERAMERTGVAQFADRPVTSL 140
Query: 1056 KGKLDSQGRVLL-----KKSKVLVLDEATASVD 1083
G + RVLL + + VL+LDE TAS+D
Sbjct: 141 SG--GERQRVLLARALAQATPVLLLDEPTASLD 171
|
Length = 402 |
| >gnl|CDD|188394 TIGR03864, PQQ_ABC_ATP, ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system | Back alignment and domain information |
|---|
Score = 52.3 bits (126), Expect = 3e-07
Identities = 51/235 (21%), Positives = 95/235 (40%), Gaps = 39/235 (16%)
Query: 357 AIEIIDGSFSWDFSSPNPTLRNINLKVFHGMRVAVCGTVGSGKSSCLSCILGGVPKESGI 416
A+E+ SF + L +++ V G VA+ G G+GKS+ S + + G
Sbjct: 1 ALEVAGLSFRY---GARRALDDVSFTVRPGRFVALLGPNGAGKSTLFSLLTRLYVAQEGQ 57
Query: 417 IRLCGTKA------------YVAQSPWIQSG-KIEENILF-------GKEMDRERYERVL 456
I + G V Q P + + +N+ + + R R +L
Sbjct: 58 ISVAGHDLRRAPRAALARLGVVFQQPTLDLDLSVRQNLRYHAALHGLSRAEARARIAELL 117
Query: 457 EACSLKKDLEVLPFGDQTIIGERGINLSGGQKQRIQIARPLYQDADIFLLDDPFSPVD-- 514
L + ++ L+GG ++R++IAR L + LLD+P +D
Sbjct: 118 ARLGLAERA-----------DDKVRELNGGHRRRVEIARALLHRPALLLLDEPTVGLDPA 166
Query: 515 --DHTGAHLFKFCWVSSSKTVIYATHQVEFLPAADLILVIKDGKITQAGKYSDIL 567
AH+ +V++ATH V+ + A D ++V+ G++ G +++
Sbjct: 167 SRAAITAHVRALA-RDQGLSVLWATHLVDEIEADDRLVVLHRGRVLADGAAAELR 220
|
Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 236 |
| >gnl|CDD|213185 cd03218, ABC_YhbG, ATP-binding cassette component of YhbG transport system | Back alignment and domain information |
|---|
Score = 52.5 bits (127), Expect = 3e-07
Identities = 46/150 (30%), Positives = 71/150 (47%), Gaps = 20/150 (13%)
Query: 965 LRGRTGSGKSTLIQTLFRIVESTAGHILIDGKDISLIGLHDLRTRLSII--PQDPTMFEG 1022
L G G+GK+T + +V+ +G IL+DG+DI+ + +H R RL I PQ+ ++F
Sbjct: 31 LLGPNGAGKTTTFYMIVGLVKPDSGKILLDGQDITKLPMHK-RARLGIGYLPQEASIFRK 89
Query: 1023 -TTRSNLD-PLEEHAD------EQIWEALDKCQLGDEVRKKKGKLDSQG--------RVL 1066
T N+ LE E++ E L++ + +RK K S G R L
Sbjct: 90 LTVEENILAVLEIRGLSKKEREEKLEELLEEFHI-THLRKSKASSLSGGERRRVEIARAL 148
Query: 1067 LKKSKVLVLDEATASVDTATDNQIQQTLRQ 1096
K L+LDE A VD IQ+ ++
Sbjct: 149 ATNPKFLLLDEPFAGVDPIAVQDIQKIIKI 178
|
The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium. Length = 232 |
| >gnl|CDD|131197 TIGR02142, modC_ABC, molybdenum ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 53.6 bits (129), Expect = 3e-07
Identities = 46/195 (23%), Positives = 88/195 (45%), Gaps = 28/195 (14%)
Query: 967 GRTGSGKSTLIQTLFRIVESTAGHILIDGKDI----SLIGLHDLRTRLSIIPQDPTMFEG 1022
GR+GSGK+TLI+ + + G I+++G+ + I L + R+ + Q+ +F
Sbjct: 30 GRSGSGKTTLIRLIAGLTRPDEGEIVLNGRTLFDSRKGIFLPPEKRRIGYVFQEARLFPH 89
Query: 1023 -TTRSNLD--------PLEEHADEQIWEALDKCQLGDEVRKKKGKL---DSQ----GRVL 1066
+ R NL + E++ E L +G + + G+L + Q GR L
Sbjct: 90 LSVRGNLRYGMKRARPSERRISFERVIELLG---IGHLLGRLPGRLSGGEKQRVAIGRAL 146
Query: 1067 LKKSKVLVLDEATASVDTATDNQIQ---QTLRQHFSDCTVVTIAHRITSVLDSA-MVLLL 1122
L ++L++DE A++D +I + L F ++ ++H + VL A V++L
Sbjct: 147 LSSPRLLLMDEPLAALDDPRKYEILPYLERLHAEF-GIPILYVSHSLQEVLRLADRVVVL 205
Query: 1123 NHGLIKEYDSPTKLL 1137
G + ++
Sbjct: 206 EDGRVAAAGPIAEVW 220
|
This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter [Transport and binding proteins, Anions]. Length = 354 |
| >gnl|CDD|184597 PRK14270, PRK14270, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 52.6 bits (126), Expect = 3e-07
Identities = 46/163 (28%), Positives = 74/163 (45%), Gaps = 27/163 (16%)
Query: 376 LRNINLKVFHGMRVAVCGTVGSGKSSCLSCI-----LGGVPKESGIIRLCGTKAY----- 425
L +INL ++ A+ G G GKS+ L C+ L K G + L G Y
Sbjct: 20 LNDINLPIYENKITALIGPSGCGKSTFLRCLNRMNDLISNVKIEGEVLLDGKNIYDKDVD 79
Query: 426 ----------VAQSPWIQSGKIEENILFGKEM----DRERYERVLEACSLKKDLEVLPFG 471
V Q P I +N+ +G + D++ ++++E +LKK
Sbjct: 80 VVELRKRVGMVFQKPNPFPMSIYDNVAYGPRIHGIKDKKELDKIVEW-ALKKAALWDEVK 138
Query: 472 DQTIIGERGINLSGGQKQRIQIARPLYQDADIFLLDDPFSPVD 514
D + + + LSGGQ+QR+ IAR + D+ L+D+P S +D
Sbjct: 139 DD--LKKSALKLSGGQQQRLCIARTIAVKPDVILMDEPTSALD 179
|
Length = 251 |
| >gnl|CDD|172741 PRK14253, PRK14253, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 52.9 bits (127), Expect = 3e-07
Identities = 51/203 (25%), Positives = 91/203 (44%), Gaps = 48/203 (23%)
Query: 949 NIRHLQVRYAPN-------LPLVLR------GRTGSGKSTLIQTLFRIVESTAG-----H 990
NI +L + Y N LP+ R G +G GKSTL++ L R+ + G
Sbjct: 5 NIENLDLFYGENQALKSINLPIPARQVTALIGPSGCGKSTLLRCLNRMNDLIEGVKITGK 64
Query: 991 ILIDGKDI-SLIGLHDLRTRLSIIPQDPTMFEGTTRSNL----------DPLEEHADEQI 1039
+ +DG+DI I + DLR ++ ++ Q P F + N+ D ++ DE +
Sbjct: 65 LTMDGEDIYGNIDVADLRIKVGMVFQKPNPFPMSIYENVAYGLRAQGIKD--KKVLDEVV 122
Query: 1040 WEALDKCQLGDEVRKKKGKLDSQG--------------RVLLKKSKVLVLDEATASVDTA 1085
+L L DEV K +L S R + + V+++DE T+++D
Sbjct: 123 ERSLRGAALWDEV---KDRLKSHAFGLSGGQQQRLCIARTIAMEPDVILMDEPTSALDPI 179
Query: 1086 TDNQIQQTLRQHFSDCTVVTIAH 1108
++I++ + + + T+V + H
Sbjct: 180 ATHKIEELMEELKKNYTIVIVTH 202
|
Length = 249 |
| >gnl|CDD|223521 COG0444, DppD, ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 53.7 bits (130), Expect = 3e-07
Identities = 50/241 (20%), Positives = 87/241 (36%), Gaps = 56/241 (23%)
Query: 372 PNPTLRNINLKVFHGMRVAVCGTVGSGKSSCLSCILGGVPKESGII-------------- 417
+ ++ ++ G + + G GSGKS I+G +PK + I
Sbjct: 17 VVKAVDGVSFELKKGEILGIVGESGSGKSVLAKAIMGLLPKPNARIVGGEILFDGKDLLS 76
Query: 418 -------RLCGTK-AYVAQSPWIQSG-----KIEENI---------LFGKEMDRERYERV 455
++ G + A + Q P + I + I K+ +ER +
Sbjct: 77 LSEKELRKIRGKEIAMIFQDP--MTSLNPVMTIGDQIAEVLRLHGKGLSKKEAKERAIEL 134
Query: 456 LEACSLKKDLEVL---PFGDQTIIGERGINLSGGQKQRIQIARPLYQDADIFLLDDPFSP 512
LE + L P LSGG +QR+ IA L + + + D+P +
Sbjct: 135 LELVGIPDPERRLKSYPH-----------ELSGGMRQRVMIAMALALNPKLLIADEPTTA 183
Query: 513 VDDHTGA---HLFKFCWVSSSKTVIYATHQVEFLP-AADLILVIKDGKITQAGKYSDILN 568
+D A L K +I TH + + AD + V+ G+I + G +I
Sbjct: 184 LDVTVQAQILDLLKELQREKGTALILITHDLGVVAEIADRVAVMYAGRIVEEGPVEEIFK 243
Query: 569 S 569
+
Sbjct: 244 N 244
|
Length = 316 |
| >gnl|CDD|172733 PRK14245, PRK14245, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 52.7 bits (126), Expect = 3e-07
Identities = 49/226 (21%), Positives = 92/226 (40%), Gaps = 31/226 (13%)
Query: 950 IRHLQVRYAPNLPLVLRGRTGSGKSTLIQTLFRIVE-----STAGHILIDGKDISLIGLH 1004
++ + + + G +G GKST ++ R+ + G I IDG++I G+
Sbjct: 19 LKGISMEIEEKSVVAFIGPSGCGKSTFLRLFNRMNDLIPATRLEGEIRIDGRNIYDKGVQ 78
Query: 1005 --DLRTRLSIIPQDP-----TMFEGTT---RSNLDPLEEHADEQIWEALDKCQLGDEVRK 1054
+LR + ++ Q P ++FE R N +++ E L L DEV+
Sbjct: 79 VDELRKNVGMVFQRPNPFPKSIFENVAYGLRVNGVKDNAFIRQRVEETLKGAALWDEVKD 138
Query: 1055 K--------KGKLDSQ---GRVLLKKSKVLVLDEATASVDTATDNQIQQTLRQHFSDCTV 1103
K G + R + VL++DE +++D + ++++ + + D T+
Sbjct: 139 KLKESAFALSGGQQQRLCIARAMAVSPSVLLMDEPASALDPISTAKVEELIHELKKDYTI 198
Query: 1104 VTIAHRITS---VLDSAMVLLLNHGLIKEYDSPTKLLENKSSSFAQ 1146
V + H + V D + G + EYD K+ N Q
Sbjct: 199 VIVTHNMQQAARVSDKTAFFYM--GEMVEYDDTKKIFTNPEKEATQ 242
|
Length = 250 |
| >gnl|CDD|183226 PRK11607, potG, putrescine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 53.7 bits (129), Expect = 3e-07
Identities = 59/221 (26%), Positives = 89/221 (40%), Gaps = 52/221 (23%)
Query: 378 NINLKVFHGMRVAVCGTVGSGKSSCLSCILGGVPKESGIIRLCGTK-AYVA--QSP---W 431
+++L ++ G A+ G G GKS+ L + G +G I L G ++V Q P
Sbjct: 37 DVSLTIYKGEIFALLGASGCGKSTLLRMLAGFEQPTAGQIMLDGVDLSHVPPYQRPINMM 96
Query: 432 IQS------GKIEENILFGKEMDR----ERYERVLEACSLKKDLEVLPFGDQTIIGERGI 481
QS +E+NI FG + D+ E RV E L E +
Sbjct: 97 FQSYALFPHMTVEQNIAFGLKQDKLPKAEIASRVNEMLGLVHMQE--------FAKRKPH 148
Query: 482 NLSGGQKQRIQIARPLYQDADIFLLDDPFSPVD---------------DHTGAHLFKFCW 526
LSGGQ+QR+ +AR L + + LLD+P +D + G
Sbjct: 149 QLSGGQRQRVALARSLAKRPKLLLLDEPMGALDKKLRDRMQLEVVDILERVGV------- 201
Query: 527 VSSSKTVIYATH-QVEFLPAADLILVIKDGKITQAGKYSDI 566
T + TH Q E + A I ++ GK Q G+ +I
Sbjct: 202 -----TCVMVTHDQEEAMTMAGRIAIMNRGKFVQIGEPEEI 237
|
Length = 377 |
| >gnl|CDD|223521 COG0444, DppD, ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 53.0 bits (128), Expect = 4e-07
Identities = 52/218 (23%), Positives = 88/218 (40%), Gaps = 56/218 (25%)
Query: 967 GRTGSGKSTLIQTLFRIVES-----TAGHILIDGKDISLIG---LHDLR-TRLSIIPQDP 1017
G +GSGKS L + + ++ G IL DGKD+ + L +R +++I QDP
Sbjct: 38 GESGSGKSVLAKAIMGLLPKPNARIVGGEILFDGKDLLSLSEKELRKIRGKEIAMIFQDP 97
Query: 1018 TMFEGTTRSNLDPLEEHADEQIWEALDKCQLGD---EVRKK-------------KGKLDS 1061
++L+P+ +QI E L G E +++ + +L S
Sbjct: 98 -------MTSLNPVMT-IGDQIAEVLRLHGKGLSKKEAKERAIELLELVGIPDPERRLKS 149
Query: 1062 ----------QGRV-----LLKKSKVLVLDEATASVDTATDNQIQQTLR--QHFSDCTVV 1104
Q RV L K+L+ DE T ++D QI L+ Q ++
Sbjct: 150 YPHELSGGMRQ-RVMIAMALALNPKLLIADEPTTALDVTVQAQILDLLKELQREKGTALI 208
Query: 1105 TIAHRITSVLDSAM---VLLLNHGLIKEYDSPTKLLEN 1139
I H + V + + V ++ G I E ++ +N
Sbjct: 209 LITHDLGVV--AEIADRVAVMYAGRIVEEGPVEEIFKN 244
|
Length = 316 |
| >gnl|CDD|131367 TIGR02314, ABC_MetN, D-methionine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 53.3 bits (128), Expect = 4e-07
Identities = 53/213 (24%), Positives = 90/213 (42%), Gaps = 25/213 (11%)
Query: 376 LRNINLKVFHGMRVAVCGTVGSGKSSCLSCI-LGGVPKESGII------------RLCGT 422
L N++L V G V G G+GKS+ + C+ L P +I L
Sbjct: 21 LNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTSGSVIVDGQDLTTLSNSELTKA 80
Query: 423 KAYVA----QSPWIQSGKIEENILFGKEMDRERYERVLEACSLKKDLEVLPFGDQTIIGE 478
+ + + S + N+ E+D + + + + L ++ GD+
Sbjct: 81 RRQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEIKR--KVTELLALVGLGDKH--DS 136
Query: 479 RGINLSGGQKQRIQIARPLYQDADIFLLDDPFSPVDDHTGA---HLFKFCWVSSSKTVIY 535
NLSGGQKQR+ IAR L + + L D+ S +D T L K T++
Sbjct: 137 YPSNLSGGQKQRVAIARALASNPKVLLCDEATSALDPATTQSILELLKEINRRLGLTILL 196
Query: 536 ATHQVEFLPA-ADLILVIKDGKITQAGKYSDIL 567
TH+++ + D + VI +G++ + G S+I
Sbjct: 197 ITHEMDVVKRICDCVAVISNGELIEQGTVSEIF 229
|
Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria. Length = 343 |
| >gnl|CDD|226641 COG4172, COG4172, ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 53.4 bits (129), Expect = 5e-07
Identities = 65/235 (27%), Positives = 95/235 (40%), Gaps = 65/235 (27%)
Query: 378 NINLKVFHGMRVAVCGTVGSGKSSCLSCILGGVPKESGIIRLCGTK-------------- 423
I+L + G + + G GSGKS+ +L +P + G IR G
Sbjct: 305 GISLTLRRGQTLGLVGESGSGKSTLGLALLRLIPSQ-GEIRFDGQDIDGLSRKEMRPLRR 363
Query: 424 --------AYVAQSPWIQSGKIEENILFGKEM---DRERYERVLEACSLKKDLEVLPFG- 471
Y + SP + G+I E L E ER +RV+EA L+ EV G
Sbjct: 364 RMQVVFQDPYGSLSPRMTVGQIIEEGLRVHEPKLSAAERDQRVIEA--LE---EV---GL 415
Query: 472 DQTIIGERGINLSGGQKQRIQIARPLYQDADIFLLDDPFSPVD----------------D 515
D SGGQ+QRI IAR L ++ LLD+P S +D
Sbjct: 416 DPATRNRYPHEFSGGQRQRIAIARALILKPELILLDEPTSALDRSVQAQVLDLLRDLQQK 475
Query: 516 HTGAHLFKFCWVSSSKTVIYA-THQVEFLPAADLILVIKDGKITQAGKYSDILNS 569
H ++LF +S V+ A H+V +V++DGKI + G + +
Sbjct: 476 HGLSYLF----ISHDLAVVRALCHRV---------IVMRDGKIVEQGPTEAVFAN 517
|
Length = 534 |
| >gnl|CDD|131367 TIGR02314, ABC_MetN, D-methionine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 53.0 bits (127), Expect = 5e-07
Identities = 51/203 (25%), Positives = 97/203 (47%), Gaps = 25/203 (12%)
Query: 967 GRTGSGKSTLIQTLFRIVESTAGHILIDGKDISLIGLHDL---RTRLSIIPQDPTMFEG- 1022
G +G+GKSTLI+ + + T+G +++DG+D++ + +L R ++ +I Q +
Sbjct: 38 GASGAGKSTLIRCVNLLERPTSGSVIVDGQDLTTLSNSELTKARRQIGMIFQHFNLLSSR 97
Query: 1023 TTRSNLD-PLE------EHADEQIWEALDKCQLGDEVRKKKGKLD-------SQGRVLLK 1068
T N+ PLE + ++ E L LGD+ L + R L
Sbjct: 98 TVFGNVALPLELDNTPKDEIKRKVTELLALVGLGDKHDSYPSNLSGGQKQRVAIARALAS 157
Query: 1069 KSKVLVLDEATASVDTATDNQIQQTLRQ--HFSDCTVVTIAHR---ITSVLDSAMVLLLN 1123
KVL+ DEAT+++D AT I + L++ T++ I H + + D V +++
Sbjct: 158 NPKVLLCDEATSALDPATTQSILELLKEINRRLGLTILLITHEMDVVKRICDC--VAVIS 215
Query: 1124 HGLIKEYDSPTKLLENKSSSFAQ 1146
+G + E + +++ + + AQ
Sbjct: 216 NGELIEQGTVSEIFSHPKTPLAQ 238
|
Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria. Length = 343 |
| >gnl|CDD|131377 TIGR02324, CP_lyasePhnL, phosphonate C-P lyase system protein PhnL | Back alignment and domain information |
|---|
Score = 51.6 bits (124), Expect = 5e-07
Identities = 48/172 (27%), Positives = 68/172 (39%), Gaps = 41/172 (23%)
Query: 374 PTLRNINLKVFHGMRVAVCGTVGSGKSSCLSCILGGVPKESGIIR---------LCG--- 421
P L+N++L V G VA+ G G+GKS+ L + +SG I L
Sbjct: 22 PVLKNVSLTVNAGECVALSGPSGAGKSTLLKSLYANYLPDSGRILVRHEGAWVDLAQASP 81
Query: 422 ---------TKAYVAQ----SPWIQSGKIEENILFGKEMDRERYERVLEACSLKKDLEVL 468
T YV+Q P + + ++ L E R A L L
Sbjct: 82 REVLEVRRKTIGYVSQFLRVIPRVSALEVVAEPLL--ERGVPREAARARARELLARLN-- 137
Query: 469 PFGDQTIIGERGINL-----SGGQKQRIQIARPLYQDADIFLLDDPFSPVDD 515
I ER +L SGG++QR+ IAR D I LLD+P + +D
Sbjct: 138 -------IPERLWHLPPATFSGGEQQRVNIARGFIADYPILLLDEPTASLDA 182
|
Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se. Length = 224 |
| >gnl|CDD|226929 COG4559, COG4559, ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 52.0 bits (125), Expect = 5e-07
Identities = 55/228 (24%), Positives = 91/228 (39%), Gaps = 43/228 (18%)
Query: 376 LRNINLKVFHGMRVAVCGTVGSGKSSCLSCILGGVPKESGIIRLCG-------------T 422
L ++L + G +A+ G G+GKS+ L + G + +SG + L G
Sbjct: 17 LDGVSLDLRPGEVLAILGPNGAGKSTLLKALSGELSPDSGEVTLNGVPLNSWPPEELARH 76
Query: 423 KAYVAQSPWIQ-SGKIEENILFG-----KEMDRERYERVLEACSLKKDLEVLPFGDQTII 476
+A + Q+ + ++E + G + E ER+ DL L
Sbjct: 77 RAVLPQNSSLAFPFTVQEVVQMGRIPHRSGREPEEDERIAAQALAATDLSGL-------- 128
Query: 477 GERGIN-LSGGQKQRIQIARPLYQ------DADIFLLDDPFSPVDDHTGAHLFK----FC 525
R LSGG++QR+Q+AR L Q LD+P S +D H +
Sbjct: 129 AGRDYRTLSGGEQQRVQLARVLAQLWPPVPSGRWLFLDEPTSALDIAHQHHTLRLARQLA 188
Query: 526 WVSSSKTVIYATHQVEFLPA--ADLILVIKDGKITQAGKYSDILNSGT 571
V+ H + L A AD I+++ G++ +G D+L T
Sbjct: 189 --REGGAVLAVLHDLN-LAAQYADRIVLLHQGRVIASGSPQDVLTDET 233
|
Length = 259 |
| >gnl|CDD|184585 PRK14239, PRK14239, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 52.1 bits (125), Expect = 5e-07
Identities = 46/162 (28%), Positives = 75/162 (46%), Gaps = 23/162 (14%)
Query: 375 TLRNINLKVFHGMRVAVCGTVGSGKSSCLSCI--LGGVPKE---SGIIRLCGTKAY---- 425
L +++L + A+ G GSGKS+ L I + + E +G I G Y
Sbjct: 20 ALNSVSLDFYPNEITALIGPSGSGKSTLLRSINRMNDLNPEVTITGSIVYNGHNIYSPRT 79
Query: 426 -----------VAQSPWIQSGKIEENILFGKEMDRERYERVLEACSLKKDLEVLPFGDQT 474
V Q P I EN+++G + + ++VL+ +++K L+ D+
Sbjct: 80 DTVDLRKEIGMVFQQPNPFPMSIYENVVYGLRLKGIKDKQVLDE-AVEKSLKGASIWDEV 138
Query: 475 --IIGERGINLSGGQKQRIQIARPLYQDADIFLLDDPFSPVD 514
+ + + LSGGQ+QR+ IAR L I LLD+P S +D
Sbjct: 139 KDRLHDSALGLSGGQQQRVCIARVLATSPKIILLDEPTSALD 180
|
Length = 252 |
| >gnl|CDD|182221 PRK10070, PRK10070, glycine betaine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 53.1 bits (127), Expect = 6e-07
Identities = 50/192 (26%), Positives = 83/192 (43%), Gaps = 34/192 (17%)
Query: 439 ENILFGKEMD----RERYERVLEACSLKKDLEVLPFGDQTIIGERGINLSGGQKQRIQIA 494
+N FG E+ ER E+ L+A + LE LSGG +QR+ +A
Sbjct: 125 DNTAFGMELAGINAEERREKALDALR-QVGLENYAHSYPD-------ELSGGMRQRVGLA 176
Query: 495 RPLYQDADIFLLDDPFSPVD----DHTGAHLFKFCWVSSSKTVIYATHQV-EFLPAADLI 549
R L + DI L+D+ FS +D L K +T+++ +H + E + D I
Sbjct: 177 RALAINPDILLMDEAFSALDPLIRTEMQDELVKL-QAKHQRTIVFISHDLDEAMRIGDRI 235
Query: 550 LVIKDGKITQAGKYSDILNS-----------GTDFMELVGAHKQALSGLDSIDR-----G 593
++++G++ Q G +ILN+ G D ++ A A + + R G
Sbjct: 236 AIMQNGEVVQVGTPDEILNNPANDYVRTFFRGVDISQVFSAKDIARRTPNGLIRKTPGFG 295
Query: 594 PVSERKSINKEN 605
P S K + E+
Sbjct: 296 PRSALKLLQDED 307
|
Length = 400 |
| >gnl|CDD|172743 PRK14255, PRK14255, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 51.9 bits (124), Expect = 6e-07
Identities = 51/219 (23%), Positives = 97/219 (44%), Gaps = 31/219 (14%)
Query: 950 IRHLQVRYAPNLPLVLRGRTGSGKSTLIQTLFRIVE-----STAGHILIDGKDISLIGLH 1004
++ + + + N L G +G GKST ++TL R+ + + G++ + G++I
Sbjct: 21 LKGIDLDFNQNEITALIGPSGCGKSTYLRTLNRMNDLIPGVTITGNVSLRGQNIYAPNED 80
Query: 1005 --DLRTRLSIIPQDPTMFEGTTRSN------LDPLEEHA--DEQIWEALDKCQLGDEVRK 1054
LR ++ ++ Q P F + N L +++ A DE + +L + + DEV+
Sbjct: 81 VVQLRKQVGMVFQQPNPFPFSIYENVIYGLRLAGVKDKAVLDEAVETSLKQAAIWDEVKD 140
Query: 1055 K--KGKLDSQG---------RVLLKKSKVLVLDEATASVDTATDNQIQQ---TLRQHFSD 1100
+ L G RVL K V++LDE T+++D + QI+ LR ++
Sbjct: 141 HLHESALSLSGGQQQRVCIARVLAVKPDVILLDEPTSALDPISSTQIENMLLELRDQYTI 200
Query: 1101 CTVVTIAHRITSVLDSAMVLLLNHGLIKEYDSPTKLLEN 1139
V H+ + + D L G + E+ ++ N
Sbjct: 201 ILVTHSMHQASRISDKTAFFL--TGNLIEFADTKQMFLN 237
|
Length = 252 |
| >gnl|CDD|226637 COG4167, SapF, ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 51.7 bits (124), Expect = 7e-07
Identities = 43/148 (29%), Positives = 70/148 (47%), Gaps = 21/148 (14%)
Query: 963 LVLRGRTGSGKSTLIQTLFRIVESTAGHILIDGKDISLIGLHDLRT-RLSIIPQDP---- 1017
L + G GSGKSTL + L ++E T+G ILI+ + G + R+ R+ +I QDP
Sbjct: 42 LAIIGENGSGKSTLAKMLAGMIEPTSGEILINDHPL-HFGDYSFRSKRIRMIFQDPNTSL 100
Query: 1018 -------TMFEGTTRSNLDPLEEHADEQIWEALDKCQLGDEVRKKKGKLDSQG------- 1063
+ + R N D E +QI+E L L + + + G
Sbjct: 101 NPRLRIGQILDFPLRLNTDLEPEQRRKQIFETLRMVGLLPDHANYYPHMLAPGQKQRVAL 160
Query: 1064 -RVLLKKSKVLVLDEATASVDTATDNQI 1090
R L+ + K+++ DEA AS+D + +Q+
Sbjct: 161 ARALILRPKIIIADEALASLDMSMRSQL 188
|
Length = 267 |
| >gnl|CDD|181906 PRK09493, glnQ, glutamine ABC transporter ATP-binding protein; Reviewed | Back alignment and domain information |
|---|
Score = 51.2 bits (123), Expect = 7e-07
Identities = 58/227 (25%), Positives = 86/227 (37%), Gaps = 44/227 (19%)
Query: 372 PNPTLRNINLKVFHGMRVAVCGTVGSGKSSCLSCILGGVPKESGIIRLCGTKAYVAQSPW 431
P L NI+L + G V + G GSGKS+ L CI SG + + G K P
Sbjct: 13 PTQVLHNIDLNIDQGEVVVIIGPSGSGKSTLLRCINKLEEITSGDLIVDGLKV---NDPK 69
Query: 432 IQSGKIE-------------------ENILFG----KEMDRERYERVLEACSLKKDLEVL 468
+ I EN++FG + +E E+ K L
Sbjct: 70 VDERLIRQEAGMVFQQFYLFPHLTALENVMFGPLRVRGASKEEAEKQARELLAKVGLA-- 127
Query: 469 PFGDQTIIGERG----INLSGGQKQRIQIARPLYQDADIFLLDDPFSPVDDHTGAHLFKF 524
ER LSGGQ+QR+ IAR L + L D+P S +D + K
Sbjct: 128 ---------ERAHHYPSELSGGQQQRVAIARALAVKPKLMLFDEPTSALDPELRHEVLKV 178
Query: 525 C--WVSSSKTVIYATHQVEFL-PAADLILVIKDGKITQAGKYSDILN 568
T++ TH++ F A ++ I G+I + G ++
Sbjct: 179 MQDLAEEGMTMVIVTHEIGFAEKVASRLIFIDKGRIAEDGDPQVLIK 225
|
Length = 240 |
| >gnl|CDD|226635 COG4161, ArtP, ABC-type arginine transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 51.4 bits (123), Expect = 8e-07
Identities = 52/224 (23%), Positives = 99/224 (44%), Gaps = 32/224 (14%)
Query: 375 TLRNINLKVFHGMRVAVCGTVGSGKSSCLSCI-LGGVPKESGIIRLCGTKAYVAQSPWIQ 433
L +I L G + + G G+GKSS L + L +P+ SG + + G +++P +
Sbjct: 17 ALFDITLDCPEGETLVLLGPSGAGKSSLLRVLNLLEMPR-SGTLNIAGNHFDFSKTPSDK 75
Query: 434 SGK--------------------IEENILFG--KEMDRERYERVLEACSLKKDLEVLPFG 471
+ + ++EN++ + + + + + A L K L + P+
Sbjct: 76 AIRDLRRNVGMVFQQYNLWPHLTVQENLIEAPCRVLGLSKDQALARAEKLLKRLRLKPYA 135
Query: 472 DQTIIGERGINLSGGQKQRIQIARPLYQDADIFLLDDPFSPVDDHTGAHLFKFC--WVSS 529
D+ ++LSGGQ+QR+ IAR L + + L D+P + +D A + +
Sbjct: 136 DRY-----PLHLSGGQQQRVAIARALMMEPQVLLFDEPTAALDPEITAQIVSIIKELAET 190
Query: 530 SKTVIYATHQVEFL-PAADLILVIKDGKITQAGKYSDILNSGTD 572
T + TH+VE A ++ +++G I + G S T+
Sbjct: 191 GITQVIVTHEVEVARKTASRVVYMENGHIVEQGDASCFTEPQTE 234
|
Length = 242 |
| >gnl|CDD|184594 PRK14264, PRK14264, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 51.8 bits (124), Expect = 8e-07
Identities = 59/230 (25%), Positives = 99/230 (43%), Gaps = 45/230 (19%)
Query: 965 LRGRTGSGKSTLIQTLFRIVESTA-----GHILIDGKDISLIG--LHDLRTRLSIIPQDP 1017
L G +G GKST ++ L R+ + G + +DG+DI G L +LR R+ ++ Q P
Sbjct: 76 LIGPSGCGKSTFLRCLNRMNDRIKAARIDGSVELDGQDIYQDGVNLVELRKRVGMVFQSP 135
Query: 1018 TMFEGTTRSNLD--PL------------------EEHADEQIWEALDKCQLGDEVRKKKG 1057
F + R N+ P ++ DE + +L + L DEV +
Sbjct: 136 NPFPKSIRENISYGPRKHGDINTGLLARLLGRDDKDAEDELVERSLRQAALWDEVNDRLD 195
Query: 1058 K--LDSQG---------RVLLKKSKVLVLDEATASVDTATDNQIQQTLRQHFSDCTVVTI 1106
L G R L +V+++DE +++D ++I+ + + + TVV +
Sbjct: 196 DNALGLSGGQQQRLCIARCLAVDPEVILMDEPASALDPIATSKIEDLIEELAEEYTVVVV 255
Query: 1107 AHRITS---VLDSAMVLLLNHGLIKEYDSPTKLLENKSSSFAQLVAEYTS 1153
H + + D V L G + EYD K+ EN S Q V +Y +
Sbjct: 256 THNMQQAARISDQTAVFLTG-GELVEYDDTDKIFENPES---QRVEDYIT 301
|
Length = 305 |
| >gnl|CDD|130256 TIGR01188, drrA, daunorubicin resistance ABC transporter ATP-binding subunit | Back alignment and domain information |
|---|
Score = 52.0 bits (125), Expect = 9e-07
Identities = 66/280 (23%), Positives = 108/280 (38%), Gaps = 49/280 (17%)
Query: 374 PTLRNINLKVFHGMRVAVCGTVGSGKSSCLSCILGGVPKESGIIRLCG-----TKAYVAQ 428
+ +N KV G G G+GK++ + + + SG R+ G V +
Sbjct: 7 KAVDGVNFKVREGEVFGFLGPNGAGKTTTIRMLTTLLRPTSGTARVAGYDVVREPRKVRR 66
Query: 429 SPWI--QSGKIEENI-----------LFG--KEMDRERYERVLEACSLKKDLEVLPFGDQ 473
S I Q ++E++ L+G K+ ER E +LE L + D+
Sbjct: 67 SIGIVPQYASVDEDLTGRENLEMMGRLYGLPKDEAEERAEELLELFELGE------AADR 120
Query: 474 TIIGERGINLSGGQKQRIQIARPLYQDADIFLLDDPFSPVDDHTGAHLFKFC--WVSSSK 531
+ SGG ++R+ IA L D+ LD+P + +D T ++ +
Sbjct: 121 PVGT-----YSGGMRRRLDIAASLIHQPDVLFLDEPTTGLDPRTRRAIWDYIRALKEEGV 175
Query: 532 TVIYATHQVEFLPA-ADLILVIKDGKITQAGKYSDILNS-GTDFMELVGAHKQAL----- 584
T++ TH +E D I +I G+I G ++ G D +E Q+L
Sbjct: 176 TILLTTHYMEEADKLCDRIAIIDHGRIIAEGTPEELKRRLGKDTLESRPRDIQSLKVEVS 235
Query: 585 --------SGLDSIDRGPVSERKSINKENDGTSTTNEIVN 616
+GL + S+R I DG T EIV
Sbjct: 236 MLIAELGETGLGLLAVTVDSDRIKI-LVPDGDETVPEIVE 274
|
This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc [Transport and binding proteins, Other]. Length = 302 |
| >gnl|CDD|184134 PRK13549, PRK13549, xylose transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 52.6 bits (127), Expect = 9e-07
Identities = 60/216 (27%), Positives = 98/216 (45%), Gaps = 51/216 (23%)
Query: 376 LRNINLKVFHGMRVAVCGTVGSGKSSCLSCILGGV-PKES--GIIRLCGTKAYVAQSPWI 432
L N++LKV G V++CG G+GKS+ L +L GV P + G I G + A + I
Sbjct: 21 LDNVSLKVRAGEIVSLCGENGAGKST-LMKVLSGVYPHGTYEGEIIFEGEE-LQASN--I 76
Query: 433 ----QSG--------------KIEENILFGKEMDR----------ERYERVLEACSLKKD 464
++G + ENI G E+ R +++L LK D
Sbjct: 77 RDTERAGIAIIHQELALVKELSVLENIFLGNEITPGGIMDYDAMYLRAQKLLA--QLKLD 134
Query: 465 LEV-LPFGDQTIIGERGINLSGGQKQRIQIARPLYQDADIFLLDDPFSPVDDHTGAHLFK 523
+ P G NL GQ+Q ++IA+ L + A + +LD+P + + + A L
Sbjct: 135 INPATPVG----------NLGLGQQQLVEIAKALNKQARLLILDEPTASLTESETAVLLD 184
Query: 524 FCWVSSSKTV--IYATHQVEFLPA-ADLILVIKDGK 556
+ + IY +H++ + A +D I VI+DG+
Sbjct: 185 IIRDLKAHGIACIYISHKLNEVKAISDTICVIRDGR 220
|
Length = 506 |
| >gnl|CDD|225438 COG2884, FtsE, Predicted ATPase involved in cell division [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
Score = 50.3 bits (121), Expect = 1e-06
Identities = 51/213 (23%), Positives = 87/213 (40%), Gaps = 42/213 (19%)
Query: 374 PTLRNINLKVFHGMRVAVCGTVGSGKSSCLSCILGGVPKESGIIRLCG---TKAYVAQSP 430
LR+++ + G V + G G+GKS+ L I G G I + G ++ + P
Sbjct: 16 EALRDVSFHIPKGEFVFLTGPSGAGKSTLLKLIYGEERPTRGKILVNGHDLSRLKGREIP 75
Query: 431 W--------------IQSGKIEENILF-----GKEMD--RERYERVLEACSLKKDLEVLP 469
+ + + EN+ GK R R VL+ LK LP
Sbjct: 76 FLRRQIGVVFQDFRLLPDRTVYENVALPLRVIGKPPREIRRRVSEVLDLVGLKHKARALP 135
Query: 470 FGDQTIIGERGINLSGGQKQRIQIARPLYQDADIFLLDDPFSPVDDHTGAHLFK-FCWVS 528
LSGG++QR+ IAR + + L D+P +D + + F ++
Sbjct: 136 -----------SQLSGGEQQRVAIARAIVNQPAVLLADEPTGNLDPDLSWEIMRLFEEIN 184
Query: 529 -SSKTVIYATHQVEFLPAADL---ILVIKDGKI 557
TV+ ATH +E + + +L ++DG++
Sbjct: 185 RLGTTVLMATHDLELV--NRMRHRVLALEDGRL 215
|
Length = 223 |
| >gnl|CDD|182036 PRK09700, PRK09700, D-allose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 52.1 bits (125), Expect = 1e-06
Identities = 46/212 (21%), Positives = 92/212 (43%), Gaps = 31/212 (14%)
Query: 377 RNINLKVFHGMRVAVCGTVGSGKSSCLSCILGGVPKESGIIRLCGTK------------- 423
R+I+ V G + G VGSG++ ++C+ G + G IRL G
Sbjct: 280 RDISFSVCRGEILGFAGLVGSGRTELMNCLFGVDKRAGGEIRLNGKDISPRSPLDAVKKG 339
Query: 424 -AYVAQSP----WIQSGKIEENILFGKEMDRERYERVL-------EACSLKKDLEVLPFG 471
AY+ +S + + I +N+ + + Y+ + E + + E+L
Sbjct: 340 MAYITESRRDNGFFPNFSIAQNMAISRSLKDGGYKGAMGLFHEVDEQRTAENQRELLALK 399
Query: 472 DQTIIGERGIN-LSGGQKQRIQIARPLYQDADIFLLDDPFSPVDDHTGAHLFKFC--WVS 528
++ + I LSGG +Q++ I++ L ++ + D+P +D A ++K
Sbjct: 400 CHSV--NQNITELSGGNQQKVLISKWLCCCPEVIIFDEPTRGIDVGAKAEIYKVMRQLAD 457
Query: 529 SSKTVIYATHQV-EFLPAADLILVIKDGKITQ 559
K ++ + ++ E + D I V +G++TQ
Sbjct: 458 DGKVILMVSSELPEIITVCDRIAVFCEGRLTQ 489
|
Length = 510 |
| >gnl|CDD|237421 PRK13539, PRK13539, cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Score = 49.9 bits (120), Expect = 1e-06
Identities = 44/164 (26%), Positives = 66/164 (40%), Gaps = 16/164 (9%)
Query: 946 GEVNIRHLQVRYAPNLPLVLRGRTGSGKSTLIQTLFRIVESTAGHILIDGKDISLIGLHD 1005
G V L A LVL G GSGK+TL++ + ++ AG I +DG D I D
Sbjct: 14 GRVLFSGLSFTLAAGEALVLTGPNGSGKTTLLRLIAGLLPPAAGTIKLDGGD---IDDPD 70
Query: 1006 LRTRLSII-PQDPTMFEGTTRSNLD---PLEEHADEQIWEALDKCQLGDEVRKKKGKLDS 1061
+ + ++ T NL+ + I AL+ L G L S
Sbjct: 71 VAEACHYLGHRNAMKPALTVAENLEFWAAFLGGEELDIAAALEAVGLAPLAHLPFGYL-S 129
Query: 1062 QG--------RVLLKKSKVLVLDEATASVDTATDNQIQQTLRQH 1097
G R+L+ + +LDE TA++D A + +R H
Sbjct: 130 AGQKRRVALARLLVSNRPIWILDEPTAALDAAAVALFAELIRAH 173
|
Length = 207 |
| >gnl|CDD|184596 PRK14267, PRK14267, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 50.6 bits (121), Expect = 1e-06
Identities = 55/227 (24%), Positives = 93/227 (40%), Gaps = 49/227 (21%)
Query: 373 NPTLRNINLKVFHGMRVAVCGTVGSGKSSCLSCI-----LGGVPKESGIIRLCGTKAYVA 427
N ++ ++LK+ A+ G G GKS+ L L + G +RL G Y
Sbjct: 17 NHVIKGVDLKIPQNGVFALMGPSGCGKSTLLRTFNRLLELNEEARVEGEVRLFGRNIYSP 76
Query: 428 QSPWIQSGK----------------IEENILFG----------KEMDRERYERVLEACSL 461
I+ + I +N+ G KE+D ER E L+ +L
Sbjct: 77 DVDPIEVRREVGMVFQYPNPFPHLTIYDNVAIGVKLNGLVKSKKELD-ERVEWALKKAAL 135
Query: 462 KKDLEVLPFGDQTIIGERGINLSGGQKQRIQIARPLYQDADIFLLDDPFSPVDDHTGAHL 521
++ + + + NLSGGQ+QR+ IAR L I L+D+P + +D A +
Sbjct: 136 WDEV-------KDRLNDYPSNLSGGQRQRLVIARALAMKPKILLMDEPTANIDPVGTAKI 188
Query: 522 FKFCW-VSSSKTVIYATHQVEFLPA-----ADLILVIKDGKITQAGK 562
+ + + T++ TH PA +D + + GK+ + G
Sbjct: 189 EELLFELKKEYTIVLVTHS----PAQAARVSDYVAFLYLGKLIEVGP 231
|
Length = 253 |
| >gnl|CDD|236755 PRK10762, PRK10762, D-ribose transporter ATP binding protein; Provisional | Back alignment and domain information |
|---|
Score = 52.3 bits (126), Expect = 1e-06
Identities = 45/171 (26%), Positives = 72/171 (42%), Gaps = 39/171 (22%)
Query: 374 PTLRNINLKVFHGMRVAVCGTVGSGKSSCLSCILGGVPKESGIIRLCGTKAYVAQSPWIQ 433
P + +++ + G + V G +G+G++ + + G +P+ SG + L G V +SP Q
Sbjct: 266 PGVNDVSFTLRKGEILGVSGLMGAGRTELMKVLYGALPRTSGYVTLDG-HEVVTRSP--Q 322
Query: 434 SGKIEENILFGKEMDRERYERVLE------------------ACSLKKDLEVLPFGD--- 472
G + I++ E DR+R VL SLK E D
Sbjct: 323 DG-LANGIVYISE-DRKRDGLVLGMSVKENMSLTALRYFSRAGGSLKHADEQQAVSDFIR 380
Query: 473 ---------QTIIGERGINLSGGQKQRIQIARPLYQDADIFLLDDPFSPVD 514
+ IG LSGG +Q++ IAR L + +LD+P VD
Sbjct: 381 LFNIKTPSMEQAIG----LLSGGNQQKVAIARGLMTRPKVLILDEPTRGVD 427
|
Length = 501 |
| >gnl|CDD|183044 PRK11231, fecE, iron-dicitrate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 51.2 bits (123), Expect = 1e-06
Identities = 46/192 (23%), Positives = 79/192 (41%), Gaps = 33/192 (17%)
Query: 950 IRHLQVRYA-----PNLPLV--------LRGRTGSGKSTLIQTLFRIVESTAGHILIDGK 996
+L V Y +L L L G G GKSTL++ R++ +G + + K
Sbjct: 5 TENLTVGYGTKRILNDLSLSLPTGKITALIGPNGCGKSTLLKCFARLLTPQSGTVFLGDK 64
Query: 997 DISLIGLHDLRTRLSIIPQDPTMFEGTTRSNL-----DPLEEH------ADEQIWE-ALD 1044
IS++ L RL+++PQ EG T L P D A++
Sbjct: 65 PISMLSSRQLARRLALLPQHHLTPEGITVRELVAYGRSPWLSLWGRLSAEDNARVNQAME 124
Query: 1045 KCQLGDEVRKKKGKLDSQGR-------VLLKKSKVLVLDEATASVDTATDNQIQQTLRQ- 1096
+ ++ ++ L R VL + + V++LDE T +D ++ + +R+
Sbjct: 125 QTRINHLADRRLTDLSGGQRQRAFLAMVLAQDTPVVLLDEPTTYLDINHQVELMRLMREL 184
Query: 1097 HFSDCTVVTIAH 1108
+ TVVT+ H
Sbjct: 185 NTQGKTVVTVLH 196
|
Length = 255 |
| >gnl|CDD|213184 cd03217, ABC_FeS_Assembly, ABC-type transport system involved in Fe-S cluster assembly, ATPase component | Back alignment and domain information |
|---|
Score = 50.2 bits (121), Expect = 1e-06
Identities = 52/205 (25%), Positives = 81/205 (39%), Gaps = 52/205 (25%)
Query: 376 LRNINLKVFHGMRVAVCGTVGSGKSSCLSCILGGVPK---ESGIIRLCGTKAYVAQSPWI 432
L+ +NL + G A+ G GSGKS+ L+ + G PK G I G
Sbjct: 16 LKGVNLTIKKGEVHALMGPNGSGKST-LAKTIMGHPKYEVTEGEILFKG----------- 63
Query: 433 QSGKIEENILFGKEMDRERYERVLEACSLK----------KDLEVLPFGDQTIIGERGIN 482
E+I D ER L K+ + L R +N
Sbjct: 64 ------EDIT-----DLPPEERARLGIFLAFQYPPEIPGVKNADFL----------RYVN 102
Query: 483 --LSGGQKQRIQIARPLYQDADIFLLDDPFSPVDDHTGAHLFKFC--WVSSSKTVIYATH 538
SGG+K+R +I + L + D+ +LD+P S +D + + K+V+ TH
Sbjct: 103 EGFSGGEKKRNEILQLLLLEPDLAILDEPDSGLDIDALRLVAEVINKLREEGKSVLIITH 162
Query: 539 QVEFL--PAADLILVIKDGKITQAG 561
L D + V+ DG+I ++G
Sbjct: 163 YQRLLDYIKPDRVHVLYDGRIVKSG 187
|
Biosynthesis of iron-sulfur clusters (Fe-S) depends on multi-protein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet. Length = 200 |
| >gnl|CDD|188208 TIGR02323, CP_lyasePhnK, phosphonate C-P lyase system protein PhnK | Back alignment and domain information |
|---|
Score = 51.0 bits (122), Expect = 1e-06
Identities = 52/228 (22%), Positives = 91/228 (39%), Gaps = 45/228 (19%)
Query: 377 RNINLKVFHGMRVAVCGTVGSGKSSCLSCILGGVPKESGIIR-----------LCGTKA- 424
R+++ ++ G + + G GSGKS+ L C+ G + + G ++A
Sbjct: 20 RDVSFDLYPGEVLGIVGESGSGKSTLLGCLAGRLAPDHGTATYIMRSGAELELYQLSEAE 79
Query: 425 --YVAQSPWIQSGKIEENILFGKEMD-------RER--------YERVLE-ACSLKKDLE 466
+ ++ W G + +N G M ER Y + A +++E
Sbjct: 80 RRRLMRTEW---GFVHQNPRDGLRMRVSAGANIGERLMAIGARHYGNIRATAQDWLEEVE 136
Query: 467 VLPFGDQTIIGERGINLSGGQKQRIQIARPLYQDADIFLLDDPFSPVDDHTGAHLFKFCW 526
+ D T I + SGG +QR+QIAR L + +D+P +D A L
Sbjct: 137 I----DPTRIDDLPRAFSGGMQQRLQIARNLVTRPRLVFMDEPTGGLDVSVQARLLDLLR 192
Query: 527 ---VSSSKTVIYATHQ---VEFLPAADLILVIKDGKITQAGKYSDILN 568
VI TH L A +LV++ G++ ++G +L+
Sbjct: 193 GLVRDLGLAVIIVTHDLGVARLL--AQRLLVMQQGRVVESGLTDQVLD 238
|
Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se [Central intermediary metabolism, Phosphorus compounds]. Length = 253 |
| >gnl|CDD|223488 COG0411, LivG, ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 51.0 bits (123), Expect = 1e-06
Identities = 40/170 (23%), Positives = 65/170 (38%), Gaps = 45/170 (26%)
Query: 376 LRNINLKVFHGMRVAVCGTVGSGKSSCLSCILGGVPKESGIIRLCGT-----------KA 424
+ +++L+V G V + G G+GK++ + I G SG + G +
Sbjct: 20 VNDVSLEVRPGEIVGLIGPNGAGKTTLFNLITGFYKPSSGTVIFRGRDITGLPPHRIARL 79
Query: 425 YVA---QSPWIQSG-KIEENIL-----------------FGKEMD--RERYERVLEACSL 461
+A Q + G + EN+ KE RER +LE L
Sbjct: 80 GIARTFQITRLFPGLTVLENVAVGAHARLGLSGLLGRPRARKEEREARERARELLEFVGL 139
Query: 462 KKDLEVLPFGDQTIIGERGINLSGGQKQRIQIARPLYQDADIFLLDDPFS 511
+ NLS GQ++R++IAR L + LLD+P +
Sbjct: 140 GEL-----------ADRPAGNLSYGQQRRLEIARALATQPKLLLLDEPAA 178
|
Length = 250 |
| >gnl|CDD|184582 PRK14236, PRK14236, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 51.2 bits (123), Expect = 1e-06
Identities = 55/188 (29%), Positives = 82/188 (43%), Gaps = 34/188 (18%)
Query: 353 NSDTAIEIIDGSFSWDFSSPNPTLRNINLKVFHGMRVAVCGTVGSGKSSCLSCI-----L 407
+ TA+E+ + + F L +I++++ A G G GKS+ L C L
Sbjct: 21 DEQTALEVRNLNL---FYGDKQALFDISMRIPKNRVTAFIGPSGCGKSTLLRCFNRMNDL 77
Query: 408 GGVPKESGIIRLCGTKAY---------------VAQSPWIQSGKIEENILFGKEMDRERY 452
+ G IRL G Y V Q P I EN+++G +
Sbjct: 78 VDNCRIEGEIRLDGQNIYDKKVDVAELRRRVGMVFQRPNPFPKSIYENVVYGLRLQGINN 137
Query: 453 ERVL-EAC--SLKKDL---EVLPFGDQTIIGERGINLSGGQKQRIQIARPLYQDADIFLL 506
RVL EA SL+ EV D+ + E LSGGQ+QR+ IAR + + ++ LL
Sbjct: 138 RRVLDEAVERSLRGAALWDEV---KDR--LHENAFGLSGGQQQRLVIARAIAIEPEVLLL 192
Query: 507 DDPFSPVD 514
D+P S +D
Sbjct: 193 DEPTSALD 200
|
Length = 272 |
| >gnl|CDD|172739 PRK14251, PRK14251, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 50.8 bits (121), Expect = 1e-06
Identities = 47/192 (24%), Positives = 90/192 (46%), Gaps = 28/192 (14%)
Query: 965 LRGRTGSGKSTLIQTLFRIVEST-----AGHILIDGKDI--SLIGLHDLRTRLSIIPQDP 1017
L G +G GKST ++ L R+ + G I +G++I S + L +LR + ++ Q P
Sbjct: 35 LIGPSGCGKSTFLRCLNRMNDDIENIKITGEIKFEGQNIYGSKMDLVELRKEVGMVFQQP 94
Query: 1018 TMFEGTTRSNLD--------PLEEHADEQIWEALDKCQLGDEVR---KKKGKLDSQG--- 1063
T F + N+ +E D+++ E+L + + E + + + S G
Sbjct: 95 TPFPFSVYDNVAYGLKIAGVKDKELIDQRVEESLKQAAIWKETKDNLDRNAQAFSGGQQQ 154
Query: 1064 -----RVLLKKSKVLVLDEATASVDTATDNQIQQTLRQHFSDCTVVTIAHRI--TSVLDS 1116
R L + KV++LDE T+++D + ++I++TL + T + + H + +
Sbjct: 155 RICIARALAVRPKVVLLDEPTSALDPISSSEIEETLMELKHQYTFIMVTHNLQQAGRISD 214
Query: 1117 AMVLLLNHGLIK 1128
L+N LI+
Sbjct: 215 QTAFLMNGDLIE 226
|
Length = 251 |
| >gnl|CDD|185067 PRK15112, PRK15112, antimicrobial peptide ABC system ATP-binding protein SapF; Provisional | Back alignment and domain information |
|---|
Score = 50.9 bits (122), Expect = 1e-06
Identities = 44/150 (29%), Positives = 70/150 (46%), Gaps = 25/150 (16%)
Query: 963 LVLRGRTGSGKSTLIQTLFRIVESTAGHILIDGKDISLIGLHDLRTRLSIIPQDPT---- 1018
L + G GSGKSTL + L ++E T+G +LID + R+ +I QDP+
Sbjct: 42 LAIIGENGSGKSTLAKMLAGMIEPTSGELLIDDHPLHFGDYSYRSQRIRMIFQDPSTSLN 101
Query: 1019 -------MFEGTTRSNLDPLEEHADEQIWEALDKCQL-GDEV----------RKKKGKLD 1060
+ + R N D E ++QI E L + L D +K++ L
Sbjct: 102 PRQRISQILDFPLRLNTDLEPEQREKQIIETLRQVGLLPDHASYYPHMLAPGQKQRLGL- 160
Query: 1061 SQGRVLLKKSKVLVLDEATASVDTATDNQI 1090
R L+ + KV++ DEA AS+D + +Q+
Sbjct: 161 --ARALILRPKVIIADEALASLDMSMRSQL 188
|
Length = 267 |
| >gnl|CDD|237454 PRK13634, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 51.2 bits (123), Expect = 1e-06
Identities = 55/230 (23%), Positives = 96/230 (41%), Gaps = 44/230 (19%)
Query: 947 EVNIRHLQVRYAPNLPLVLR------------------GRTGSGKSTLIQTLFRIVESTA 988
++ + ++ RY P R G TGSGKSTL+Q L +++ T+
Sbjct: 2 DITFQKVEHRYQYKTPFERRALYDVNVSIPSGSYVAIIGHTGSGKSTLLQHLNGLLQPTS 61
Query: 989 GHILIDGKDISL----IGLHDLRTRLSIIPQDP--TMFEGTTR-------SNLDPLEEHA 1035
G + I + I+ L LR ++ I+ Q P +FE T N EE A
Sbjct: 62 GTVTIGERVITAGKKNKKLKPLRKKVGIVFQFPEHQLFEETVEKDICFGPMNFGVSEEDA 121
Query: 1036 DEQIWEALDKCQLGDEVRKKKGKLDSQGR--------VLLKKSKVLVLDEATASVDTATD 1087
++ E ++ L +E+ + S G+ VL + +VLVLDE TA +D
Sbjct: 122 KQKAREMIELVGLPEELLARSPFELSGGQMRRVAIAGVLAMEPEVLVLDEPTAGLDPKGR 181
Query: 1088 NQIQQ---TLRQHFSDCTVVTIAHRITSVLDSA-MVLLLNHGLIKEYDSP 1133
++ + L + T V + H + A +++++ G + +P
Sbjct: 182 KEMMEMFYKLHKE-KGLTTVLVTHSMEDAARYADQIVVMHKGTVFLQGTP 230
|
Length = 290 |
| >gnl|CDD|224026 COG1101, PhnK, ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 50.8 bits (122), Expect = 1e-06
Identities = 51/198 (25%), Positives = 81/198 (40%), Gaps = 29/198 (14%)
Query: 967 GRTGSGKSTLIQTLFRIVESTAGHILIDGKDISLIGLHDLRTRLSIIPQDP--------T 1018
G G+GKSTL+ + ++ T+G ILIDG D++ + L+ + QDP T
Sbjct: 39 GSNGAGKSTLLNAIAGDLKPTSGQILIDGVDVTKKSVAKRANLLARVFQDPLAGTAPELT 98
Query: 1019 MFE--------GTTRSNLDPLEEHADEQIWEALDKCQLGDEVR--KKKGKLDSQGR---- 1064
+ E G R L E E L + LG E R + G L R
Sbjct: 99 IEENLALAESRGKKRGLSSALNERRRSSFRERLARLGLGLENRLSDRIGLLSGGQRQALS 158
Query: 1065 ---VLLKKSKVLVLDEATASVDTATDNQIQQTLRQHFSD--CTVVTIAHRITSVLDSAMV 1119
L K+L+LDE TA++D T + + + + T + + H + LD
Sbjct: 159 LLMATLHPPKILLLDEHTAALDPKTAEFVMELTAKIVEEHKLTTLMVTHNMEDALDYGNR 218
Query: 1120 LLLNHG--LIKEYDSPTK 1135
L++ H ++ + K
Sbjct: 219 LIMLHSGKIVLDVTGEEK 236
|
Length = 263 |
| >gnl|CDD|182880 PRK10982, PRK10982, galactose/methyl galaxtoside transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 52.0 bits (125), Expect = 1e-06
Identities = 50/205 (24%), Positives = 94/205 (45%), Gaps = 31/205 (15%)
Query: 376 LRNINLKVFHGMRVAVCGTVGSGKSSCLSCILGGVPKESGIIRLCGTKA-YVAQSPWIQS 434
L N+NLKV A+ G G+GKS+ L C+ G K+SG I G + + + +++
Sbjct: 14 LDNVNLKVRPHSIHALMGENGAGKSTLLKCLFGIYQKDSGSILFQGKEIDFKSSKEALEN 73
Query: 435 G--------------KIEENILFGKE------MDRERYERVLEACSLKKDLEVLPFGDQT 474
G + +N+ G+ +D+++ R +A + D+++ P
Sbjct: 74 GISMVHQELNLVLQRSVMDNMWLGRYPTKGMFVDQDKMYRDTKAIFDELDIDIDP----- 128
Query: 475 IIGERGINLSGGQKQRIQIARPLYQDADIFLLDDPFSPVDDHTGAHLFKFCWVSSSK--T 532
+ LS Q Q I+IA+ +A I ++D+P S + + HLF +
Sbjct: 129 --RAKVATLSVSQMQMIEIAKAFSYNAKIVIMDEPTSSLTEKEVNHLFTIIRKLKERGCG 186
Query: 533 VIYATHQV-EFLPAADLILVIKDGK 556
++Y +H++ E D I +++DG+
Sbjct: 187 IVYISHKMEEIFQLCDEITILRDGQ 211
|
Length = 491 |
| >gnl|CDD|226927 COG4555, NatA, ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 50.1 bits (120), Expect = 2e-06
Identities = 43/194 (22%), Positives = 82/194 (42%), Gaps = 24/194 (12%)
Query: 965 LRGRTGSGKSTLIQTLFRIVESTAGHILIDGKDISLIGLHDLRTRLSIIP-QDPTMFEGT 1023
L G G+GK+TL++ + ++ +G + IDG D +R ++ ++ + T
Sbjct: 33 LLGENGAGKTTLLRMIATLLIPDSGKVTIDGVDTVRDPS-FVRRKIGVLFGERGLYARLT 91
Query: 1024 TRSNL-------DPLEEHADEQIWEALDKCQLGDEVRKKKGKLDSQG--------RVLLK 1068
R NL + +I E + QL + + ++ G+ S G R L+
Sbjct: 92 ARENLKYFARLNGLSRKEIKARIAELSKRLQLLEYLDRRVGEF-STGMKQKVAIARALVH 150
Query: 1069 KSKVLVLDEATASVDTATDNQIQQTLRQ-HFSDCTVVTIAH---RITSVLDSAMVLLLNH 1124
+LVLDE T+ +D T + ++Q V+ +H + ++ D V++L+
Sbjct: 151 DPSILVLDEPTSGLDIRTRRKFHDFIKQLKNEGRAVIFSSHIMQEVEALCDR--VIVLHK 208
Query: 1125 GLIKEYDSPTKLLE 1138
G + S L
Sbjct: 209 GEVVLEGSIEALDA 222
|
Length = 245 |
| >gnl|CDD|237455 PRK13637, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 50.8 bits (122), Expect = 2e-06
Identities = 61/233 (26%), Positives = 97/233 (41%), Gaps = 42/233 (18%)
Query: 376 LRNINLKVFHGMRVAVCGTVGSGKSSCLSCILGGVPKESGIIRLCGTK------------ 423
L N+N+++ G V + G GSGKS+ + + G + SG I + G
Sbjct: 23 LDNVNIEIEDGEFVGLIGHTGSGKSTLIQHLNGLLKPTSGKIIIDGVDITDKKVKLSDIR 82
Query: 424 ---AYVAQSPWIQ--SGKIEENILFGK----EMDRERYERVLEACSLKK-DLEVL----P 469
V Q P Q IE++I FG + E RV A ++ D E P
Sbjct: 83 KKVGLVFQYPEYQLFEETIEKDIAFGPINLGLSEEEIENRVKRAMNIVGLDYEDYKDKSP 142
Query: 470 FGDQTIIGERGINLSGGQKQRIQIARPLYQDADIFLLDDPFSPVDDHTGAHLF---KFCW 526
F LSGGQK+R+ IA + + I +LD+P + +D + K
Sbjct: 143 F-----------ELSGGQKRRVAIAGVVAMEPKILILDEPTAGLDPKGRDEILNKIKELH 191
Query: 527 VSSSKTVIYATHQVEFLPA-ADLILVIKDGKITQAGKYSDILNSGTDFMELVG 578
+ T+I +H +E + AD I+V+ GK G ++ + +E +G
Sbjct: 192 KEYNMTIILVSHSMEDVAKLADRIIVMNKGKCELQGTPREVFKE-VETLESIG 243
|
Length = 287 |
| >gnl|CDD|213201 cd03234, ABCG_White, White pigment protein homolog of ABCG transporter subfamily | Back alignment and domain information |
|---|
Score = 50.0 bits (120), Expect = 2e-06
Identities = 50/188 (26%), Positives = 80/188 (42%), Gaps = 32/188 (17%)
Query: 967 GRTGSGKSTLIQTLFRIVES---TAGHILIDGKDISLIGLHDLRTRLSIIPQDP------ 1017
G +GSGK+TL+ + VE T+G IL +G+ + ++ + QD
Sbjct: 40 GSSGSGKTTLLDAISGRVEGGGTTSGQILFNGQPRKP---DQFQKCVAYVRQDDILLPGL 96
Query: 1018 TMFEGTTRSNLDPLEEHADE----QIWEALDKCQLGDE-VRKKKGKLDSQG---RV---- 1065
T+ E T + + L + + + E + L + K S G RV
Sbjct: 97 TVRETLTYTAILRLPRKSSDAIRKKRVEDVLLRDLALTRIGGNLVKGISGGERRRVSIAV 156
Query: 1066 -LLKKSKVLVLDEATASVDTATDNQIQQTLRQHF-SDCTVVTIAHRITS----VLDSAMV 1119
LL KVL+LDE T+ +D+ T + TL Q + V+ H+ S + D +
Sbjct: 157 QLLWDPKVLILDEPTSGLDSFTALNLVSTLSQLARRNRIVILTIHQPRSDLFRLFDR--I 214
Query: 1120 LLLNHGLI 1127
LLL+ G I
Sbjct: 215 LLLSSGEI 222
|
The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors. The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in macrophages, hepatocytes, and intestinal mucosa cells. ABCG1 (ABC8), the human homolog of the Drosophila white gene is induced in monocyte-derived macrophages during cholesterol influx mediated by acetylated low-density lipoprotein. It is possible that human ABCG1 forms heterodimers with several heterologous partners. Length = 226 |
| >gnl|CDD|213198 cd03231, ABC_CcmA_heme_exporter, Cytochrome c biogenesis ATP-binding export protein | Back alignment and domain information |
|---|
Score = 49.4 bits (118), Expect = 2e-06
Identities = 42/176 (23%), Positives = 68/176 (38%), Gaps = 39/176 (22%)
Query: 386 GMRVAVCGTVGSGKSSCLSCILGGVPKESGIIRLCGTK------------AYVAQSPWIQ 433
G + V G GSGK++ L + G P +G + L G Y+ +P I+
Sbjct: 26 GEALQVTGPNGSGKTTLLRILAGLSPPLAGRVLLNGGPLDFQRDSIARGLLYLGHAPGIK 85
Query: 434 SG-KIEENILFGKEM-DRERYERVLEACSLKKDLEVLPFGDQTIIGERGINLSGGQKQRI 491
+ + EN+ F E+ E L L E P LS GQ++R+
Sbjct: 86 TTLSVLENLRFWHADHSDEQVEEALARVGLNG-FEDRPVA----------QLSAGQQRRV 134
Query: 492 QIARPLYQDADIFLLDDPFSPVD--------DHTGAHLFKFCWVSSSKTVIYATHQ 539
+AR L +++LD+P + +D + H + V+ THQ
Sbjct: 135 ALARLLLSGRPLWILDEPTTALDKAGVARFAEAMAGHC------ARGGMVVLTTHQ 184
|
CcmA, the ATP-binding component of the bacterial CcmAB transporter. The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperon that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE. Length = 201 |
| >gnl|CDD|213235 cd03268, ABC_BcrA_bacitracin_resist, ATP-binding cassette domain of the bacitracin-resistance transporter | Back alignment and domain information |
|---|
Score = 49.5 bits (119), Expect = 2e-06
Identities = 35/146 (23%), Positives = 60/146 (41%), Gaps = 21/146 (14%)
Query: 967 GRTGSGKSTLIQTLFRIVESTAGHILIDGKDISLIGLHDLRTRLSIIPQDPTMF-EGTTR 1025
G G+GK+T ++ + +++ +G I DGK + R+ + + P + T R
Sbjct: 33 GPNGAGKTTTMKIILGLIKPDSGEITFDGKSYQ--KNIEALRRIGALIEAPGFYPNLTAR 90
Query: 1026 SNLDPLEEHA------DEQIWEALDKCQLGDEVRKKKGKLDSQG--------RVLLKKSK 1071
N L A ++I E LD L D +KK S G LL
Sbjct: 91 EN---LRLLARLLGIRKKRIDEVLDVVGLKDSAKKKVKGF-SLGMKQRLGIALALLGNPD 146
Query: 1072 VLVLDEATASVDTATDNQIQQTLRQH 1097
+L+LDE T +D ++++ +
Sbjct: 147 LLILDEPTNGLDPDGIKELRELILSL 172
|
The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multi-enzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein. Length = 208 |
| >gnl|CDD|172761 PRK14273, PRK14273, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 50.4 bits (120), Expect = 2e-06
Identities = 56/202 (27%), Positives = 92/202 (45%), Gaps = 32/202 (15%)
Query: 365 FSWDFSSPNPTLRNINLKVFHGMRVAVCGTVGSGKSSCLSCI------LGGVPKESGII- 417
F DF + L NIN+K+ A+ G G GKS+ L + + G+ E +I
Sbjct: 16 FYTDFKA----LNNINIKILKNSITALIGPSGCGKSTFLRTLNRMNDLVEGIKIEGNVIY 71
Query: 418 -------------RLCGTKAYVAQSPWIQSGKIEENILFGKEM----DRERYERVLEACS 460
L V Q+P I +NI +G ++ D+++ + ++E S
Sbjct: 72 EGKNIYSNNFDILELRRKIGMVFQTPNPFLMSIYDNISYGPKIHGTKDKKKLDEIVEQ-S 130
Query: 461 LKKDLEVLPFGDQTIIGERGINLSGGQKQRIQIARPLYQDADIFLLDDPFSPVDD-HTGA 519
LKK D+ + ++LSGGQ+QR+ IAR L + ++ L+D+P S +D TG
Sbjct: 131 LKKSALWNEVKDK--LNTNALSLSGGQQQRLCIARTLAIEPNVILMDEPTSALDPISTGK 188
Query: 520 HLFKFCWVSSSKTVIYATHQVE 541
+ S T+I TH ++
Sbjct: 189 IEELIINLKESYTIIIVTHNMQ 210
|
Length = 254 |
| >gnl|CDD|213233 cd03266, ABC_NatA_sodium_exporter, ATP-binding cassette domain of the Na+ transporter | Back alignment and domain information |
|---|
Score = 50.1 bits (120), Expect = 2e-06
Identities = 46/207 (22%), Positives = 86/207 (41%), Gaps = 30/207 (14%)
Query: 376 LRNINLKVFHGMRVAVCGTVGSGKSSCLSCILGGVPKESGIIRLCGTKAYVAQSPWIQSG 435
+ ++ V G + G G+GK++ L + G + ++G + G V + P
Sbjct: 21 VDGVSFTVKPGEVTGLLGPNGAGKTTTLRMLAGLLEPDAGFATVDGFD--VVKEP--AEA 76
Query: 436 KIEENILFGKEMDRERYERV--------------LEACSLKKDLEVLP--FGDQTIIGER 479
+ + Y+R+ L+ L LE L G + ++ R
Sbjct: 77 RRRLGFVSDS---TGLYDRLTARENLEYFAGLYGLKGDELTARLEELADRLGMEELLDRR 133
Query: 480 GINLSGGQKQRIQIARPLYQDADIFLLDDPFSPVDDHTGAHLFKFC--WVSSSKTVIYAT 537
S G +Q++ IAR L D + LLD+P + +D L +F + K ++++T
Sbjct: 134 VGGFSTGMRQKVAIARALVHDPPVLLLDEPTTGLDVMATRALREFIRQLRALGKCILFST 193
Query: 538 H---QVEFLPAADLILVIKDGKITQAG 561
H +VE L D ++V+ G++ G
Sbjct: 194 HIMQEVERL--CDRVVVLHRGRVVYEG 218
|
NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the proton-motive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunorubicin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single integral membrane protein. Length = 218 |
| >gnl|CDD|224057 COG1134, TagH, ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Score = 50.3 bits (121), Expect = 2e-06
Identities = 50/213 (23%), Positives = 91/213 (42%), Gaps = 37/213 (17%)
Query: 376 LRNINLKVFHGMRVAVCGTVGSGKSSCLSCILGGVPKESGIIRLCGTKAY-----VAQSP 430
L++I+ +++ G RV + G G+GKS+ L I G SG +++ G A P
Sbjct: 43 LKDISFEIYKGERVGIIGHNGAGKSTLLKLIAGIYKPTSGKVKVTGKVAPLIELGAGFDP 102
Query: 431 WIQSGKIEENILF--------GKEMDRERYERVLEACSLKKDLEVLPFGDQTIIGERGIN 482
+G+ ENI KE+D E+ + ++E L F DQ +
Sbjct: 103 -ELTGR--ENIYLRGLILGLTRKEID-EKVDEIIEFAELGD------FIDQPV-----KT 147
Query: 483 LSGGQKQRIQIARPLYQDADIFLLDDPFSPVDDHTGAH-----LFKFCWVSSSKTVIYAT 537
S G R+ + + + DI LLD+ + V D L + V +KT++ +
Sbjct: 148 YSSGMYARLAFSVATHVEPDILLLDEVLA-VGDAAFQEKCLERLNEL--VEKNKTIVLVS 204
Query: 538 HQVEFLP-AADLILVIKDGKITQAGKYSDILNS 569
H + + D + ++ G+I G +++ +
Sbjct: 205 HDLGAIKQYCDRAIWLEHGQIRMEGSPEEVIPA 237
|
Length = 249 |
| >gnl|CDD|182993 PRK11144, modC, molybdate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 51.0 bits (123), Expect = 2e-06
Identities = 47/211 (22%), Positives = 90/211 (42%), Gaps = 50/211 (23%)
Query: 390 AVCGTVGSGKSSCLSCILGGVPKESGIIRLCGTK-----------------AYVAQS--- 429
A+ G G+GK+S ++ I G + G I L G YV Q
Sbjct: 28 AIFGRSGAGKTSLINAISGLTRPQKGRIVLNGRVLFDAEKGICLPPEKRRIGYVFQDARL 87
Query: 430 -PWIQSGKIEENILFG-KEMDRERYERVLEACSLKKDLEVLPFGDQTIIGERGINLSGGQ 487
P K+ N+ +G + ++++++ ++ L+ P +LSGG+
Sbjct: 88 FPHY---KVRGNLRYGMAKSMVAQFDKIVALLGIEPLLDRYP-----------GSLSGGE 133
Query: 488 KQRIQIARPLYQDADIFLLDDPFSPVD----DHTGAHLFKFCWVSSSKTV----IYATHQ 539
KQR+ I R L ++ L+D+P + +D +L + ++ + +Y +H
Sbjct: 134 KQRVAIGRALLTAPELLLMDEPLASLDLPRKRELLPYLERL-----AREINIPILYVSHS 188
Query: 540 V-EFLPAADLILVIKDGKITQAGKYSDILNS 569
+ E L AD ++V++ GK+ G ++ S
Sbjct: 189 LDEILRLADRVVVLEQGKVKAFGPLEEVWAS 219
|
Length = 352 |
| >gnl|CDD|172749 PRK14261, PRK14261, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 50.2 bits (120), Expect = 2e-06
Identities = 57/229 (24%), Positives = 91/229 (39%), Gaps = 49/229 (21%)
Query: 373 NPTLRNINLKVFHGMRVAVCGTVGSGKSSCLSC------ILGGVPKESGIIRLCGTK--- 423
L +I + + A+ G G GKS+ L C ++ G + +G I G
Sbjct: 19 KHALYDITISIPKNRVTALIGPSGCGKSTLLRCFNRMNDLIPGC-RITGDILYNGENIMD 77
Query: 424 ------------AYVAQSPWIQSGKIEENILFGKEMDRERYERVLEAC---SLKKDLEVL 468
V Q P I EN+ +G + E+ ++ L+ SLK
Sbjct: 78 SGADVVALRRKIGMVFQRPNPFPKSIYENVAYGPRIHGEKNKKTLDTIVEKSLKGAALWD 137
Query: 469 PFGDQTIIGERGINLSGGQKQRIQIARPLYQDADIFLLDDPFSPVDDHTGAHLFKFCW-V 527
D+ + + ++LSGGQ+QR+ IAR L + ++ L+D+P S +D A + +
Sbjct: 138 EVKDR--LHDSALSLSGGQQQRLCIARTLAVNPEVILMDEPCSALDPIATAKIEDLIEDL 195
Query: 528 SSSKTVIYATHQVEFLPAADLILVIKDGKITQAGKYSDILNSGTDFMEL 576
TVI TH ++ QA + SD T FM L
Sbjct: 196 KKEYTVIIVTHNMQ-----------------QAARVSDY----TGFMYL 223
|
Length = 253 |
| >gnl|CDD|226631 COG4152, COG4152, ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 50.8 bits (122), Expect = 2e-06
Identities = 52/213 (24%), Positives = 87/213 (40%), Gaps = 29/213 (13%)
Query: 376 LRNINLKVFHGMRVAVCGTVGSGKSSCLSCILGGVPKESGIIRLCGTKAYVAQSPWI--- 432
+ NI+ +V G + G G+GK++ ILG + G I G I
Sbjct: 18 VDNISFEVPPGEIFGLLGPNGAGKTTTFRMILGLLEPTEGEITWNGGPLSQEIKNRIGYL 77
Query: 433 -------QSGKIEENILFG---KEMDRERYERVLEACSLKKDLEVLPFGDQTIIGERGIN 482
+E+ + + K M + E + + + LE+ I E
Sbjct: 78 PEERGLYPKMTVEDQLKYLAELKGMPKA--EIQKKLQAWLERLEI-VGKKTKKIKE---- 130
Query: 483 LSGGQKQRIQIARPLYQDADIFLLDDPFSPVDDHTGAHLFK---FCWVSSSKTVIYATHQ 539
LS G +Q+IQ + + ++ +LD+PFS +D L K F T+I+++H+
Sbjct: 131 LSKGNQQKIQFISAVIHEPELLILDEPFSGLDP-VNVELLKDAIFELKEEGATIIFSSHR 189
Query: 540 ---VEFLPAADLILVIKDGKITQAGKYSDILNS 569
VE L D +L++K G+ G DI S
Sbjct: 190 MEHVEEL--CDRLLMLKKGQTVLYGTVEDIRRS 220
|
Length = 300 |
| >gnl|CDD|131681 TIGR02633, xylG, D-xylose ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 51.4 bits (123), Expect = 2e-06
Identities = 56/214 (26%), Positives = 92/214 (42%), Gaps = 45/214 (21%)
Query: 376 LRNINLKVFHGMRVAVCGTVGSGKSSCLSCILGGVPKESGIIRLCGT---KAYVAQSPWI 432
L I+L+V G V +CG G+GKS+ + + G P GT + Y + SP
Sbjct: 17 LDGIDLEVRPGECVGLCGENGAGKSTLMKILSGVYP--------HGTWDGEIYWSGSPLK 68
Query: 433 QSG----------------------KIEENILFGKEM----DRERY-ERVLEACSLKKDL 465
S + ENI G E+ R Y L A +L ++L
Sbjct: 69 ASNIRDTERAGIVIIHQELTLVPELSVAENIFLGNEITLPGGRMAYNAMYLRAKNLLREL 128
Query: 466 EVLPFGDQTIIGERGINLSGGQKQRIQIARPLYQDADIFLLDDPFSPVDDHTGAHLFKFC 525
++ +G+ G GGQ+Q ++IA+ L + A + +LD+P S + + L
Sbjct: 129 QLDADNVTRPVGDYG----GGQQQLVEIAKALNKQARLLILDEPSSSLTEKETEILLDII 184
Query: 526 WVSSSKTV--IYATHQVEFLPA-ADLILVIKDGK 556
+ V +Y +H++ + A D I VI+DG+
Sbjct: 185 RDLKAHGVACVYISHKLNEVKAVCDTICVIRDGQ 218
|
Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005) [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 500 |
| >gnl|CDD|163585 TIGR03873, F420-0_ABC_ATP, proposed F420-0 ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 50.2 bits (120), Expect = 2e-06
Identities = 48/211 (22%), Positives = 82/211 (38%), Gaps = 39/211 (18%)
Query: 385 HGMRVAVCGTVGSGKSSCLSCILGGVPKESGIIRLCGTK-------------AYVAQSP- 430
G + G GSGKS+ L + G + ++G + L G A V Q
Sbjct: 26 PGSLTGLLGPNGSGKSTLLRLLAGALRPDAGTVDLAGVDLHGLSRRARARRVALVEQDSD 85
Query: 431 ---------WIQSGKIEENILFGKE--MDRERYERVLEACSLKKDLEVLPFGDQTIIGER 479
+ G+I L+ + D +R L L D+ +
Sbjct: 86 TAVPLTVRDVVALGRIPHRSLWAGDSPHDAAVVDRALARTELSH------LADRDMS--- 136
Query: 480 GINLSGGQKQRIQIARPLYQDADIFLLDDPFSPVDDHTGAHLFKFC--WVSSSKTVIYAT 537
LSGG++QR+ +AR L Q+ + LLD+P + +D ++ TV+ A
Sbjct: 137 --TLSGGERQRVHVARALAQEPKLLLLDEPTNHLDVRAQLETLALVRELAATGVTVVAAL 194
Query: 538 HQVEF-LPAADLILVIKDGKITQAGKYSDIL 567
H + D ++V+ G++ AG ++L
Sbjct: 195 HDLNLAASYCDHVVVLDGGRVVAAGPPREVL 225
|
This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter. Length = 256 |
| >gnl|CDD|213259 cd03292, ABC_FtsE_transporter, ATP-binding cassette domain of the cell division transporter | Back alignment and domain information |
|---|
Score = 48.9 bits (117), Expect = 3e-06
Identities = 56/215 (26%), Positives = 86/215 (40%), Gaps = 46/215 (21%)
Query: 374 PTLRNINLKVFHGMRVAVCGTVGSGKSSCLSCILGGVPKESGIIRLCGTK---------A 424
L IN+ + G V + G G+GKS+ L I SG IR+ G
Sbjct: 15 AALDGINISISAGEFVFLVGPSGAGKSTLLKLIYKEELPTSGTIRVNGQDVSDLRGRAIP 74
Query: 425 YVAQSPWI--QSGK------IEENILFGKEMD-------RERYERVLEACSLKKDLEVLP 469
Y+ + + Q + + EN+ F E+ R+R LE L LP
Sbjct: 75 YLRRKIGVVFQDFRLLPDRNVYENVAFALEVTGVPPREIRKRVPAALELVGLSHKHRALP 134
Query: 470 FGDQTIIGERGINLSGGQKQRIQIARPLYQDADIFLLDDPFSPVD-DHTG--AHLFKFCW 526
LSGG++QR+ IAR + I + D+P +D D T +L K
Sbjct: 135 AE-----------LSGGEQQRVAIARAIVNSPTILIADEPTGNLDPDTTWEIMNLLK--- 180
Query: 527 VSSSK---TVIYATHQVEFLPA-ADLILVIKDGKI 557
+K TV+ ATH E + ++ ++ GK+
Sbjct: 181 -KINKAGTTVVVATHAKELVDTTRHRVIALERGKL 214
|
FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring. Length = 214 |
| >gnl|CDD|163452 TIGR03740, galliderm_ABC, gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit | Back alignment and domain information |
|---|
Score = 49.3 bits (118), Expect = 3e-06
Identities = 60/217 (27%), Positives = 89/217 (41%), Gaps = 23/217 (10%)
Query: 376 LRNINLKVFHGMRVAVCGTVGSGKSSCLSCILGGVPKESGIIRLCGTKAYVAQSPWIQS- 434
+ NI+L V + G G+GKS+ L I G + SG I G PW +
Sbjct: 16 VNNISLTVPKNSVYGLLGPNGAGKSTLLKMITGILRPTSGEIIFDG-------HPWTRKD 68
Query: 435 -----GKIEENILFGKEMDRERYERVLEACSLKKD--LEVLPFGDQTIIGERGI-NLSGG 486
IE L+ RE + L EVL D T G++ S G
Sbjct: 69 LHKIGSLIESPPLYENLTARENLKVHTTLLGLPDSRIDEVLNIVDLTNTGKKKAKQFSLG 128
Query: 487 QKQRIQIARPLYQDADIFLLDDPFSPVDDHTGAHLFKFCWVSSSK--TVIYATH---QVE 541
KQR+ IA L + +LD+P + +D L + + TVI ++H +V+
Sbjct: 129 MKQRLGIAIALLNHPKLLILDEPTNGLDPIGIQELRELIRSFPEQGITVILSSHILSEVQ 188
Query: 542 FLPAADLILVIKDGKITQAGKYSDILNSGTDFMELVG 578
L AD I +I +G + GK + N F+E+V
Sbjct: 189 QL--ADHIGIISEGVLGYQGKINKSENLEKLFVEVVK 223
|
Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes. Length = 223 |
| >gnl|CDD|182592 PRK10619, PRK10619, histidine/lysine/arginine/ornithine transporter subunit; Provisional | Back alignment and domain information |
|---|
Score = 50.0 bits (119), Expect = 3e-06
Identities = 51/212 (24%), Positives = 100/212 (47%), Gaps = 32/212 (15%)
Query: 967 GRTGSGKSTLIQTLFRIVESTAGHILIDGKDISLI-------------GLHDLRTRLSII 1013
G +GSGKST ++ + + + + G I+++G+ I+L+ L LRTRL+++
Sbjct: 38 GSSGSGKSTFLRCINFLEKPSEGSIVVNGQTINLVRDKDGQLKVADKNQLRLLRTRLTMV 97
Query: 1014 PQD------PTMFEGTTRSNLDPL---EEHADEQIWEALDKCQLGDEVRKK--------K 1056
Q T+ E + + L ++ A E+ + L K + + + K +
Sbjct: 98 FQHFNLWSHMTVLENVMEAPIQVLGLSKQEARERAVKYLAKVGIDERAQGKYPVHLSGGQ 157
Query: 1057 GKLDSQGRVLLKKSKVLVLDEATASVDTATDNQIQQTLRQHFSDC-TVVTIAHRITSVLD 1115
+ S R L + +VL+ DE T+++D ++ + ++Q + T+V + H +
Sbjct: 158 QQRVSIARALAMEPEVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHEMGFARH 217
Query: 1116 -SAMVLLLNHGLIKEYDSPTKLLENKSSSFAQ 1146
S+ V+ L+ G I+E +P +L N S Q
Sbjct: 218 VSSHVIFLHQGKIEEEGAPEQLFGNPQSPRLQ 249
|
Length = 257 |
| >gnl|CDD|184203 PRK13643, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 50.1 bits (119), Expect = 3e-06
Identities = 65/227 (28%), Positives = 103/227 (45%), Gaps = 30/227 (13%)
Query: 937 KPNNSRPSHGEVNIRHLQVRYAPNLPLVLRGRTGSGKSTLIQTLFRIVESTAGHILIDGK 996
+PN+ S +I L+V+ L+ G TGSGKSTL+Q L +++ T G + +
Sbjct: 12 QPNSPFASRALFDI-DLEVKKGSYTALI--GHTGSGKSTLLQHLNGLLQPTEGKVTVG-- 66
Query: 997 DISLIG------LHDLRTRLSIIPQDP--TMFEGTT-------RSNLDPLEEHADEQIWE 1041
DI + + +R ++ ++ Q P +FE T N +E A++ E
Sbjct: 67 DIVVSSTSKQKEIKPVRKKVGVVFQFPESQLFEETVLKDVAFGPQNFGIPKEKAEKIAAE 126
Query: 1042 ALDKCQLGDEVRKKKGKLDSQGR--------VLLKKSKVLVLDEATASVDTATDNQIQQT 1093
L+ L DE +K S G+ +L + +VLVLDE TA +D ++ Q
Sbjct: 127 KLEMVGLADEFWEKSPFELSGGQMRRVAIAGILAMEPEVLVLDEPTAGLDPKARIEMMQL 186
Query: 1094 LRQ-HFSDCTVVTIAHRITSVLDSA-MVLLLNHGLIKEYDSPTKLLE 1138
H S TVV + H + V D A V LL G I +P+ + +
Sbjct: 187 FESIHQSGQTVVLVTHLMDDVADYADYVYLLEKGHIISCGTPSDVFQ 233
|
Length = 288 |
| >gnl|CDD|130256 TIGR01188, drrA, daunorubicin resistance ABC transporter ATP-binding subunit | Back alignment and domain information |
|---|
Score = 50.1 bits (120), Expect = 3e-06
Identities = 48/191 (25%), Positives = 85/191 (44%), Gaps = 26/191 (13%)
Query: 967 GRTGSGKSTLIQTLFRIVESTAGHILIDGKDISLIGLHDLRTRLSIIPQDPTMFEG-TTR 1025
G G+GK+T I+ L ++ T+G + G D+ + +R + I+PQ ++ E T R
Sbjct: 26 GPNGAGKTTTIRMLTTLLRPTSGTARVAGYDV-VREPRKVRRSIGIVPQYASVDEDLTGR 84
Query: 1026 SNLDPL-------EEHADEQIWEALDKCQLGDEVRKKKGKLDSQG--------RVLLKKS 1070
NL+ + ++ A+E+ E L+ +LG E + S G L+ +
Sbjct: 85 ENLEMMGRLYGLPKDEAEERAEELLELFELG-EAADRPVGTYSGGMRRRLDIAASLIHQP 143
Query: 1071 KVLVLDEATASVDTATDNQIQQTLRQHFSDCTVVTIAHRITSVLDSAMVL-----LLNHG 1125
VL LDE T +D T I +R + + + T ++ A L +++HG
Sbjct: 144 DVLFLDEPTTGLDPRTRRAIWDYIRALKEEGVTILLT---THYMEEADKLCDRIAIIDHG 200
Query: 1126 LIKEYDSPTKL 1136
I +P +L
Sbjct: 201 RIIAEGTPEEL 211
|
This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc [Transport and binding proteins, Other]. Length = 302 |
| >gnl|CDD|213236 cd03269, ABC_putative_ATPase, ATP-binding cassette domain of an uncharacterized transporter | Back alignment and domain information |
|---|
Score = 49.2 bits (118), Expect = 3e-06
Identities = 53/214 (24%), Positives = 88/214 (41%), Gaps = 47/214 (21%)
Query: 376 LRNINLKVFHGMRVAVCGTVGSGKSSCLSCILGGVPKESGIIRLCGTKAYVAQSPWI--- 432
L +I+ V G + G G+GK++ + ILG + +SG + G +A I
Sbjct: 16 LDDISFSVEKGEIFGLLGPNGAGKTTTIRMILGIILPDSGEVLFDGKPLDIAARNRIGYL 75
Query: 433 -------QSGKIEENILF-------GKEMDRERYERVLEACSL----KKDLEVLPFGDQT 474
K+ + +++ KE R R + LE L K +E
Sbjct: 76 PEERGLYPKMKVIDQLVYLAQLKGLKKEEARRRIDEWLERLELSEYANKRVE-------- 127
Query: 475 IIGERGINLSGGQKQRIQIARPLYQDADIFLLDDPFS---PVDDHTGAHLFK---FCWVS 528
LS G +Q++Q + D ++ +LD+PFS PV+ L K
Sbjct: 128 -------ELSKGNQQKVQFIAAVIHDPELLILDEPFSGLDPVN----VELLKDVIRELAR 176
Query: 529 SSKTVIYATHQVEFLPA-ADLILVIKDGKITQAG 561
+ KTVI +THQ+E + D +L++ G+ G
Sbjct: 177 AGKTVILSTHQMELVEELCDRVLLLNKGRAVLYG 210
|
This subgroup is related to the subfamily A transporters involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two integral membranes. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 210 |
| >gnl|CDD|236863 PRK11153, metN, DL-methionine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 50.6 bits (122), Expect = 3e-06
Identities = 46/157 (29%), Positives = 73/157 (46%), Gaps = 36/157 (22%)
Query: 967 GRTGSGKSTLIQTLFRIVESTAGHILIDGKDISLIGLHDLR-TRLSI--IPQ------DP 1017
G +G+GKSTLI+ + + T+G +L+DG+D++ + +LR R I I Q
Sbjct: 38 GASGAGKSTLIRCINLLERPTSGRVLVDGQDLTALSEKELRKARRQIGMIFQHFNLLSSR 97
Query: 1018 TMFEGTTRSNLD-PLE------EHADEQIWEALDKCQLGDEVRKKKGKLDSQ-------- 1062
T+F+ N+ PLE ++ E L+ L D K + +Q
Sbjct: 98 TVFD-----NVALPLELAGTPKAEIKARVTELLELVGLSD----KADRYPAQLSGGQKQR 148
Query: 1063 ---GRVLLKKSKVLVLDEATASVDTATDNQIQQTLRQ 1096
R L KVL+ DEAT+++D AT I + L+
Sbjct: 149 VAIARALASNPKVLLCDEATSALDPATTRSILELLKD 185
|
Length = 343 |
| >gnl|CDD|163483 TIGR03771, anch_rpt_ABC, anchored repeat-type ABC transporter, ATP-binding subunit | Back alignment and domain information |
|---|
Score = 49.5 bits (118), Expect = 3e-06
Identities = 47/207 (22%), Positives = 90/207 (43%), Gaps = 25/207 (12%)
Query: 381 LKVFHGMRVAVCGTVGSGKSSCLSCILGGVPKESGIIRLCGTKA--------YVAQS--- 429
L G + + G G+GK++ L ILG +P G +++ G YV Q
Sbjct: 1 LSADKGELLGLLGPNGAGKTTLLRAILGLIPPAKGTVKVAGASPGKGWRHIGYVPQRHEF 60
Query: 430 PWIQSGKIEENILFGKE--MDRERYERVLEACSLKKDLE---VLPFGDQTIIGERGINLS 484
W + ++ G+ + R V + +++ L + D+ + GE LS
Sbjct: 61 AWDFPISVAHTVMSGRTGHIGWLRRPCVADFAAVRDALRRVGLTELADRPV-GE----LS 115
Query: 485 GGQKQRIQIARPLYQDADIFLLDDPFSPVDDHTGAHLFKF--CWVSSSKTVIYATHQ-VE 541
GGQ+QR+ +AR L + LLD+PF+ +D T L + + ++ TH +
Sbjct: 116 GGQRQRVLVARALATRPSVLLLDEPFTGLDMPTQELLTELFIELAGAGTAILMTTHDLAQ 175
Query: 542 FLPAADLILVIKDGKITQAGKYSDILN 568
+ D ++++ +G++ G + +
Sbjct: 176 AMATCDRVVLL-NGRVIADGTPQQLQD 201
|
This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown [Transport and binding proteins, Unknown substrate]. Length = 223 |
| >gnl|CDD|182182 PRK09984, PRK09984, phosphonate/organophosphate ester transporter subunit; Provisional | Back alignment and domain information |
|---|
Score = 49.6 bits (118), Expect = 3e-06
Identities = 58/223 (26%), Positives = 93/223 (41%), Gaps = 46/223 (20%)
Query: 373 NPTLRNINLKVFHGMRVAVCGTVGSGKSSCL----SCILGGVPKESGI------IRLCGT 422
+ L ++L + HG VA+ G GSGKS+ L I G S I ++ G
Sbjct: 17 HQALHAVDLNIHHGEMVALLGPSGSGKSTLLRHLSGLITGDKSAGSHIELLGRTVQREGR 76
Query: 423 KAYVAQSPWIQSGKI------------EENILFG------------KEMDRERYERVLEA 458
A + +G I EN+L G RE+ +R L+A
Sbjct: 77 LARDIRKSRANTGYIFQQFNLVNRLSVLENVLIGALGSTPFWRTCFSWFTREQKQRALQA 136
Query: 459 CSLKKDLEVLPFGDQTIIGERGINLSGGQKQRIQIARPLYQDADIFLLDDPFSPVDDHTG 518
+ + ++ F Q R LSGGQ+QR+ IAR L Q A + L D+P + +D +
Sbjct: 137 LT---RVGMVHFAHQ-----RVSTLSGGQQQRVAIARALMQQAKVILADEPIASLDPESA 188
Query: 519 ---AHLFKFCWVSSSKTVIYATHQVEF-LPAADLILVIKDGKI 557
+ + TV+ HQV++ L + I+ ++ G +
Sbjct: 189 RIVMDTLRDINQNDGITVVVTLHQVDYALRYCERIVALRQGHV 231
|
Length = 262 |
| >gnl|CDD|226360 COG3840, ThiQ, ABC-type thiamine transport system, ATPase component [Coenzyme metabolism] | Back alignment and domain information |
|---|
Score = 49.3 bits (118), Expect = 4e-06
Identities = 48/195 (24%), Positives = 87/195 (44%), Gaps = 22/195 (11%)
Query: 967 GRTGSGKSTLIQTLFRIVESTAGHILIDGKDISLIGLHDLRTRLSIIPQDPTMFEG-TTR 1025
G +G+GKSTL+ + +G ILI+G D + +S++ Q+ +F T
Sbjct: 32 GPSGAGKSTLLNLIAGFETPASGEILINGVDHT--ASPPAERPVSMLFQENNLFAHLTVA 89
Query: 1026 SNLD----P---LEEHADEQIWEALDKCQLGDEVRKKKGKLDSQG--------RVLLKKS 1070
N+ P L E++ A + L +++ G+L S G R L+++
Sbjct: 90 QNIGLGLSPGLKLNAEQREKVEAAAAQVGLAGFLKRLPGEL-SGGQRQRVALARCLVREQ 148
Query: 1071 KVLVLDEATASVDTATDNQIQQTLRQHFS--DCTVVTIAHRITSVLDSA-MVLLLNHGLI 1127
+L+LDE +++D A ++ + Q T++ + H A V+ L++G I
Sbjct: 149 PILLLDEPFSALDPALRAEMLALVSQLCDERKMTLLMVTHHPEDAARIADRVVFLDNGRI 208
Query: 1128 KEYDSPTKLLENKSS 1142
S +LL K+S
Sbjct: 209 AAQGSTQELLSGKAS 223
|
Length = 231 |
| >gnl|CDD|226646 COG4178, COG4178, ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only] | Back alignment and domain information |
|---|
Score = 50.4 bits (121), Expect = 4e-06
Identities = 52/197 (26%), Positives = 82/197 (41%), Gaps = 16/197 (8%)
Query: 329 LDRIASF-LCLEGLQTDVLEKMPRGNSDTAIEIIDGSFSWD---FSSPN--PTLRNINLK 382
L R+A F LE Q D + G + D + + +P+ L +N +
Sbjct: 356 LLRLAEFRQALEAAQMDTEKPARTGRRIDFDDNADHGITLENLSLRTPDGQTLLSELNFE 415
Query: 383 VFHGMRVAVCGTVGSGKSSCLSCILGGVPKESGIIRLCGTKA--YVAQSPWIQSGKIEEN 440
V G R+ + G G+GK+S L + G P SG I + A ++ Q P++ G + E
Sbjct: 416 VRPGERLLITGESGAGKTSLLRALAGLWPWGSGRISMPADSALLFLPQRPYLPQGTLREA 475
Query: 441 ILF---GKEMDRERYERVLEACSLKKDLEVLPFGDQTIIGERGINLSGGQKQRIQIARPL 497
+ + + VL L E L D+ +R LSGG++QR+ AR L
Sbjct: 476 LCYPNAAPDFSDAELVAVLHKVGLGDLAERL---DEEDRWDR--VLSGGEQQRLAFARLL 530
Query: 498 YQDADIFLLDDPFSPVD 514
LD+ S +D
Sbjct: 531 LHKPKWVFLDEATSALD 547
|
Length = 604 |
| >gnl|CDD|184196 PRK13636, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 49.5 bits (118), Expect = 4e-06
Identities = 56/243 (23%), Positives = 107/243 (44%), Gaps = 45/243 (18%)
Query: 355 DTAIEIIDGSFSWDFSSPNPTLRNINLKVFHGMRVAVCGTVGSGKSSCLSCILGGVPKES 414
D +++ + ++++S L+ IN+ + G A+ G G+GKS+ L G+ K S
Sbjct: 3 DYILKVEE--LNYNYSDGTHALKGININIKKGEVTAILGGNGAGKSTLFQN-LNGILKPS 59
Query: 415 ----------------GIIRLCGTKAYVAQSPWIQ--SGKIEENILFG-------KEMDR 449
G+++L + V Q P Q S + +++ FG ++ R
Sbjct: 60 SGRILFDGKPIDYSRKGLMKLRESVGMVFQDPDNQLFSASVYQDVSFGAVNLKLPEDEVR 119
Query: 450 ERYERVLEACSLKKDLEVLPFGDQTIIGERGINLSGGQKQRIQIARPLYQDADIFLLDDP 509
+R + L+ + D+ LS GQK+R+ IA L + + +LD+P
Sbjct: 120 KRVDNALKRTG------IEHLKDKPTHC-----LSFGQKKRVAIAGVLVMEPKVLVLDEP 168
Query: 510 FSPVDDHTGAHLFKFCWVSSSK----TVIYATHQVEFLPA-ADLILVIKDGKITQAGKYS 564
+ +D + + K V K T+I ATH ++ +P D + V+K+G++ G
Sbjct: 169 TAGLDPMGVSEIMKLL-VEMQKELGLTIIIATHDIDIVPLYCDNVFVMKEGRVILQGNPK 227
Query: 565 DIL 567
++
Sbjct: 228 EVF 230
|
Length = 283 |
| >gnl|CDD|130324 TIGR01257, rim_protein, retinal-specific rim ABC transporter | Back alignment and domain information |
|---|
Score = 51.2 bits (122), Expect = 4e-06
Identities = 51/204 (25%), Positives = 90/204 (44%), Gaps = 21/204 (10%)
Query: 374 PTLRNINLKVFHGMRVAVCGTVGSGKSSCLSCILGGVPKESGIIRLCGTKAYVAQSPWIQ 433
P + +N+ + A G G+GK++ LS + G +P SG + + G Q
Sbjct: 944 PAVDRLNITFYENQITAFLGHNGAGKTTTLSILTGLLPPTSGTVLVGGKDIETNLDAVRQ 1003
Query: 434 SG-------------KIEENILFGKEMD-RERYERVLEACSLKKDLEVLPFGDQTIIGER 479
S + E+ILF ++ R E LE ++ +D G E
Sbjct: 1004 SLGMCPQHNILFHHLTVAEHILFYAQLKGRSWEEAQLEMEAMLEDT-----GLHHKRNEE 1058
Query: 480 GINLSGGQKQRIQIARPLYQDADIFLLDDPFSPVDDHTGAHLFKFCW-VSSSKTVIYATH 538
+LSGG ++++ +A DA + +LD+P S VD ++ ++ S +T+I +TH
Sbjct: 1059 AQDLSGGMQRKLSVAIAFVGDAKVVVLDEPTSGVDPYSRRSIWDLLLKYRSGRTIIMSTH 1118
Query: 539 QV-EFLPAADLILVIKDGKITQAG 561
+ E D I +I G++ +G
Sbjct: 1119 HMDEADLLGDRIAIISQGRLYCSG 1142
|
This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease [Transport and binding proteins, Other]. Length = 2272 |
| >gnl|CDD|172762 PRK14274, PRK14274, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 49.5 bits (118), Expect = 4e-06
Identities = 48/169 (28%), Positives = 83/169 (49%), Gaps = 39/169 (23%)
Query: 376 LRNINLKVFHGMRVAVCGTVGSGKSS---CLSCILGGVP--KESGIIRLCGTK------- 423
L+NINL + A+ G G GKS+ L+ ++ VP K +G + G+
Sbjct: 28 LKNINLSIPENEVTAIIGPSGCGKSTFIKTLNLMIQMVPNVKLTGEMNYNGSNILKGKVD 87
Query: 424 --------AYVAQ--SPWIQSGKIEENILFG--------KEMDRERYERVLEACSLKKDL 465
V Q +P+ QS I +N+ +G K+ +E E+ L+ +L ++
Sbjct: 88 LVELRKNIGMVFQKGNPFPQS--IFDNVAYGPRIHGTKNKKKLQEIVEKSLKDVALWDEV 145
Query: 466 EVLPFGDQTIIGERGINLSGGQKQRIQIARPLYQDADIFLLDDPFSPVD 514
+ D+ + + ++LSGGQ+QR+ IAR L + D+ L+D+P S +D
Sbjct: 146 K-----DR--LHTQALSLSGGQQQRLCIARALATNPDVLLMDEPTSALD 187
|
Length = 259 |
| >gnl|CDD|236707 PRK10522, PRK10522, multidrug transporter membrane component/ATP-binding component; Provisional | Back alignment and domain information |
|---|
Score = 50.7 bits (122), Expect = 4e-06
Identities = 38/134 (28%), Positives = 65/134 (48%), Gaps = 17/134 (12%)
Query: 963 LVLRGRTGSGKSTLIQTLFRIVESTAGHILIDGKDISLIGLHDLRTRLSIIPQDPTMFEG 1022
L L G GSGKSTL L + + +G IL+DGK ++ D R S + D +F+
Sbjct: 352 LFLIGGNGSGKSTLAMLLTGLYQPQSGEILLDGKPVTAEQPEDYRKLFSAVFTDFHLFDQ 411
Query: 1023 TTRSNLDPLEEHADEQIWEA-LDKCQLGDEVRKKKGKLD----SQG---RV-----LLKK 1069
L P + A+ + E L++ ++ ++ + G++ S+G R+ L ++
Sbjct: 412 L----LGPEGKPANPALVEKWLERLKMAHKLELEDGRISNLKLSKGQKKRLALLLALAEE 467
Query: 1070 SKVLVLDEATASVD 1083
+L+LDE A D
Sbjct: 468 RDILLLDEWAADQD 481
|
Length = 547 |
| >gnl|CDD|233305 TIGR01189, ccmA, heme ABC exporter, ATP-binding protein CcmA | Back alignment and domain information |
|---|
Score = 48.1 bits (115), Expect = 5e-06
Identities = 41/189 (21%), Positives = 71/189 (37%), Gaps = 39/189 (20%)
Query: 374 PTLRNINLKVFHGMRVAVCGTVGSGKSSCLSCILGGVPKESGIIRLCGTK---------- 423
++ + G + V G G GK++ L + G + +SG +R GT
Sbjct: 14 MLFEGLSFTLNAGEALQVTGPNGIGKTTLLRILAGLLRPDSGEVRWNGTALAEQRDEPHR 73
Query: 424 --AYVAQSPWIQSG-KIEENILFGKEMDRERYERVLEACSLK--KDLEVLPFGDQTIIGE 478
Y+ P ++ EN+ F + + +A + E LP
Sbjct: 74 NILYLGHLPGLKPELSALENLHFWAAIHGGAQRTIEDALAAVGLTGFEDLPAA------- 126
Query: 479 RGINLSGGQKQRIQIARPLYQDADIFLLDDPFSPVD--------DHTGAHLFKFCWVSSS 530
LS GQ++R+ +AR A +++LD+P + +D AHL +
Sbjct: 127 ---QLSAGQQRRLALARLWLSRAPLWILDEPTTALDKAGVALLAGLLRAHLAR------G 177
Query: 531 KTVIYATHQ 539
V+ THQ
Sbjct: 178 GIVLLTTHQ 186
|
This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c [Protein fate, Protein and peptide secretion and trafficking, Transport and binding proteins, Other]. Length = 198 |
| >gnl|CDD|184200 PRK13640, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 49.4 bits (118), Expect = 5e-06
Identities = 50/197 (25%), Positives = 87/197 (44%), Gaps = 23/197 (11%)
Query: 965 LRGRTGSGKST---LIQTLFRIVESTAGHILIDGKDISLIGLHDLRTRLSIIPQDP-TMF 1020
L G GSGKST LI L ++ I +DG ++ + D+R ++ I+ Q+P F
Sbjct: 38 LIGHNGSGKSTISKLINGLLLPDDNPNSKITVDGITLTAKTVWDIREKVGIVFQNPDNQF 97
Query: 1021 EGTTRS--------NLDPLEEHADEQIWEALDKCQLGDEVRKKKGKLDSQGR-------- 1064
G T N + + + L + D + + L S G+
Sbjct: 98 VGATVGDDVAFGLENRAVPRPEMIKIVRDVLADVGMLDYIDSEPANL-SGGQKQRVAIAG 156
Query: 1065 VLLKKSKVLVLDEATASVDTATDNQIQQTLRQHFSD--CTVVTIAHRITSVLDSAMVLLL 1122
+L + K+++LDE+T+ +D A QI + +R+ TV++I H I + VL+L
Sbjct: 157 ILAVEPKIIILDESTSMLDPAGKEQILKLIRKLKKKNNLTVISITHDIDEANMADQVLVL 216
Query: 1123 NHGLIKEYDSPTKLLEN 1139
+ G + SP ++
Sbjct: 217 DDGKLLAQGSPVEIFSK 233
|
Length = 282 |
| >gnl|CDD|182817 PRK10895, PRK10895, lipopolysaccharide ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 49.1 bits (117), Expect = 5e-06
Identities = 50/211 (23%), Positives = 93/211 (44%), Gaps = 25/211 (11%)
Query: 378 NINLKVFHGMRVAVCGTVGSGKSSCLSCILGGVPKESGII--------------RLCGTK 423
+++L V G V + G G+GK++ ++G VP+++G I R
Sbjct: 21 DVSLTVNSGEIVGLLGPNGAGKTTTFYMVVGIVPRDAGNIIIDDEDISLLPLHARARRGI 80
Query: 424 AYVAQSPWI-QSGKIEENILFGKEM--DRERYERVLEACSLKKDLEVLPFGDQTIIGERG 480
Y+ Q I + + +N++ ++ D +R A L ++ + D G
Sbjct: 81 GYLPQEASIFRRLSVYDNLMAVLQIRDDLSAEQREDRANELMEEFHIEHLRDSM-----G 135
Query: 481 INLSGGQKQRIQIARPLYQDADIFLLDDPFSPVDDHTGAHLFKFC--WVSSSKTVIYATH 538
+LSGG+++R++IAR L + LLD+PF+ VD + + + S V+ H
Sbjct: 136 QSLSGGERRRVEIARALAANPKFILLDEPFAGVDPISVIDIKRIIEHLRDSGLGVLITDH 195
Query: 539 QV-EFLPAADLILVIKDGKITQAGKYSDILN 568
V E L + ++ G + G ++IL
Sbjct: 196 NVRETLAVCERAYIVSQGHLIAHGTPTEILQ 226
|
Length = 241 |
| >gnl|CDD|226929 COG4559, COG4559, ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 49.3 bits (118), Expect = 5e-06
Identities = 41/172 (23%), Positives = 73/172 (42%), Gaps = 28/172 (16%)
Query: 963 LVLRGRTGSGKSTLIQTLFRIVESTAGHILIDGKDISLIGLHDLRTRLSIIPQDPTM-FE 1021
L + G G+GKSTL++ L + +G + ++G ++ +L +++PQ+ ++ F
Sbjct: 30 LAILGPNGAGKSTLLKALSGELSPDSGEVTLNGVPLNSWPPEELARHRAVLPQNSSLAFP 89
Query: 1022 GTTRS--------NLDPLEEHADEQIWE-ALDKCQL----GDEVRKKKGKLDSQGRVLLK 1068
T + + E DE+I AL L G + R G Q RV L
Sbjct: 90 FTVQEVVQMGRIPHRSGREPEEDERIAAQALAATDLSGLAGRDYRTLSG--GEQQRVQLA 147
Query: 1069 K-----------SKVLVLDEATASVDTATDNQIQQTLRQHFSD-CTVVTIAH 1108
+ + L LDE T+++D A + + RQ + V+ + H
Sbjct: 148 RVLAQLWPPVPSGRWLFLDEPTSALDIAHQHHTLRLARQLAREGGAVLAVLH 199
|
Length = 259 |
| >gnl|CDD|237454 PRK13634, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 49.6 bits (119), Expect = 5e-06
Identities = 57/233 (24%), Positives = 96/233 (41%), Gaps = 44/233 (18%)
Query: 376 LRNINLKVFHGMRVAVCGTVGSGKSSCLSCILGGVPKESGIIRL------CGTKA----- 424
L ++N+ + G VA+ G GSGKS+ L + G + SG + + G K
Sbjct: 23 LYDVNVSIPSGSYVAIIGHTGSGKSTLLQHLNGLLQPTSGTVTIGERVITAGKKNKKLKP 82
Query: 425 ------YVAQSPWIQ--SGKIEENILFG-------KEMDRERYERVLEACSLKKD-LEVL 468
V Q P Q +E++I FG +E +++ ++E L ++ L
Sbjct: 83 LRKKVGIVFQFPEHQLFEETVEKDICFGPMNFGVSEEDAKQKAREMIELVGLPEELLARS 142
Query: 469 PFGDQTIIGERGINLSGGQKQRIQIARPLYQDADIFLLDDPFSPVDDHTGAH----LFKF 524
PF LSGGQ +R+ IA L + ++ +LD+P + +D G +F
Sbjct: 143 PF-----------ELSGGQMRRVAIAGVLAMEPEVLVLDEPTAGLDPK-GRKEMMEMFYK 190
Query: 525 CWVSSSKTVIYATHQVEFLPA-ADLILVIKDGKITQAGKYSDILNSGTDFMEL 576
T + TH +E AD I+V+ G + G +I + +
Sbjct: 191 LHKEKGLTTVLVTHSMEDAARYADQIVVMHKGTVFLQGTPREIFADPDELEAI 243
|
Length = 290 |
| >gnl|CDD|237650 PRK14265, PRK14265, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 49.2 bits (117), Expect = 5e-06
Identities = 49/189 (25%), Positives = 84/189 (44%), Gaps = 26/189 (13%)
Query: 376 LRNINLKVFHGMRVAVCGTVGSGKSSCLSC------ILGGVPKESGI------------- 416
L +++LK+ +A G G GKS+ L C ++ G E +
Sbjct: 36 LVDVHLKIPAKKIIAFIGPSGCGKSTLLRCFNRMNDLIPGAKVEGRLLYRDRNIYDSQIN 95
Query: 417 -IRLCGTKAYVAQSPWIQSGKIEENILFGKEMD--RERYERVLEACSLKKDLEVLPFGDQ 473
++L V Q P I ENI F + + + ++E SL++ D+
Sbjct: 96 SVKLRRQVGMVFQRPNPFPKSIYENIAFAPRANGYKGNLDELVED-SLRRAAIWEEVKDK 154
Query: 474 TIIGERGINLSGGQKQRIQIARPLYQDADIFLLDDPFSPVDDHTGAHLFKFCW-VSSSKT 532
+ E+G LSGGQ+QR+ IAR + D+ L+D+P S +D + + + C + T
Sbjct: 155 --LKEKGTALSGGQQQRLCIARAIAMKPDVLLMDEPCSALDPISTRQVEELCLELKEQYT 212
Query: 533 VIYATHQVE 541
+I TH ++
Sbjct: 213 IIMVTHNMQ 221
|
Length = 274 |
| >gnl|CDD|233206 TIGR00954, 3a01203, Peroxysomal Fatty Acyl CoA Transporter (FAT) Family protei | Back alignment and domain information |
|---|
Score = 50.5 bits (121), Expect = 5e-06
Identities = 43/167 (25%), Positives = 70/167 (41%), Gaps = 32/167 (19%)
Query: 379 INLKVFHGMRVAVCGTVGSGKSSCLSCILGG----------VPKESGIIRLCGTKAYVAQ 428
++ +V G + +CG G GKSS L ILG P + + YV Q
Sbjct: 471 LSFEVPSGNNLLICGPNGCGKSS-LFRILGELWPVYGGRLTKPAKGKLF-------YVPQ 522
Query: 429 SPWIQSGKIEENILFGKEMDRERYERVLEACSLKKDLEVLPFGDQTIIGERGIN------ 482
P++ G + + I++ + + R L L++ L+ + I ER
Sbjct: 523 RPYMTLGTLRDQIIYPDSSE-DMKRRGLSDKDLEQILDNVQLTH---ILEREGGWSAVQD 578
Query: 483 ----LSGGQKQRIQIARPLYQDADIFLLDDPFSPVDDHTGAHLFKFC 525
LSGG+KQRI +AR Y +LD+ S V ++++ C
Sbjct: 579 WMDVLSGGEKQRIAMARLFYHKPQFAILDECTSAVSVDVEGYMYRLC 625
|
[Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 659 |
| >gnl|CDD|182829 PRK10908, PRK10908, cell division protein FtsE; Provisional | Back alignment and domain information |
|---|
Score = 48.7 bits (116), Expect = 5e-06
Identities = 43/144 (29%), Positives = 69/144 (47%), Gaps = 18/144 (12%)
Query: 965 LRGRTGSGKSTLIQTLFRIVESTAGHILIDGKDISLIGLHD---LRTRLSIIPQD-PTMF 1020
L G +G+GKSTL++ + I +AG I G DI+ + + LR ++ +I QD +
Sbjct: 33 LTGHSGAGKSTLLKLICGIERPSAGKIWFSGHDITRLKNREVPFLRRQIGMIFQDHHLLM 92
Query: 1021 EGTTRSNLD-PL------EEHADEQIWEALDKCQLGDEVRKKKGKLD--SQGRV-----L 1066
+ T N+ PL + ++ ALDK L D+ + +L Q RV +
Sbjct: 93 DRTVYDNVAIPLIIAGASGDDIRRRVSAALDKVGLLDKAKNFPIQLSGGEQQRVGIARAV 152
Query: 1067 LKKSKVLVLDEATASVDTATDNQI 1090
+ K VL+ DE T ++D A I
Sbjct: 153 VNKPAVLLADEPTGNLDDALSEGI 176
|
Length = 222 |
| >gnl|CDD|172748 PRK14260, PRK14260, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 48.9 bits (116), Expect = 5e-06
Identities = 46/171 (26%), Positives = 76/171 (44%), Gaps = 28/171 (16%)
Query: 967 GRTGSGKSTLIQTLFRIVE-----STAGHILIDGKDI--SLIGLHDLRTRLSIIPQDPTM 1019
G +G GKST I+TL RI E G + G++I I ++ LR ++ ++ Q P
Sbjct: 40 GPSGCGKSTFIKTLNRISELEGPVKVEGVVDFFGQNIYDPRININRLRRQIGMVFQRPNP 99
Query: 1020 FEGTTRSNL---------DPLEEHADEQIWEALDKCQLGDEVRKK--KGKLDSQG----- 1063
F + N+ P + DE + AL L EV+ K K L G
Sbjct: 100 FPMSIYENVAYGVRISAKLPQAD-LDEIVESALKGAALWQEVKDKLNKSALGLSGGQQQR 158
Query: 1064 ----RVLLKKSKVLVLDEATASVDTATDNQIQQTLRQHFSDCTVVTIAHRI 1110
R L K KVL++DE +++D ++++ + S+ T+ + H +
Sbjct: 159 LCIARALAIKPKVLLMDEPCSALDPIATMKVEELIHSLRSELTIAIVTHNM 209
|
Length = 259 |
| >gnl|CDD|172735 PRK14247, PRK14247, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 48.8 bits (116), Expect = 6e-06
Identities = 59/224 (26%), Positives = 91/224 (40%), Gaps = 41/224 (18%)
Query: 376 LRNINLKVFHGMRVAVCGTVGSGKSSCLSCI-----LGGVPKESGIIRLCGTKAY----- 425
L +NL++ A+ G GSGKS+ L L + SG + L G +
Sbjct: 19 LDGVNLEIPDNTITALMGPSGSGKSTLLRVFNRLIELYPEARVSGEVYLDGQDIFKMDVI 78
Query: 426 --------VAQSP-WIQSGKIEENILFGKEMDR------ERYERVLEACSLKKDLEVLPF 470
V Q P I + I EN+ G +++R E ERV A LE
Sbjct: 79 ELRRRVQMVFQIPNPIPNLSIFENVALGLKLNRLVKSKKELQERVRWA------LEKAQL 132
Query: 471 GDQTI--IGERGINLSGGQKQRIQIARPLYQDADIFLLDDPFSPVDDHTGAHLFK-FCWV 527
D+ + LSGGQ+QR+ IAR L ++ L D+P + +D A + F +
Sbjct: 133 WDEVKDRLDAPAGKLSGGQQQRLCIARALAFQPEVLLADEPTANLDPENTAKIESLFLEL 192
Query: 528 SSSKTVIYATHQVEFLPAA----DLILVIKDGKITQAGKYSDIL 567
T++ TH F A D + + G+I + G ++
Sbjct: 193 KKDMTIVLVTH---FPQQAARISDYVAFLYKGQIVEWGPTREVF 233
|
Length = 250 |
| >gnl|CDD|184202 PRK13642, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 48.9 bits (116), Expect = 6e-06
Identities = 42/192 (21%), Positives = 89/192 (46%), Gaps = 24/192 (12%)
Query: 967 GRTGSGKSTLIQTLFRIVESTAGHILIDGKDISLIGLHDLRTRLSIIPQDP-TMFEGTT- 1024
G+ GSGKST + + + E G + IDG+ ++ + +LR ++ ++ Q+P F G T
Sbjct: 40 GQNGSGKSTTARLIDGLFEEFEGKVKIDGELLTAENVWNLRRKIGMVFQNPDNQFVGATV 99
Query: 1025 -------RSNLDPLEEHADEQIWEALDKCQLGDEVRKKKGKLDSQGR-------VLLKKS 1070
N E +++ EAL + D ++ +L + ++ +
Sbjct: 100 EDDVAFGMENQGIPREEMIKRVDEALLAVNMLDFKTREPARLSGGQKQRVAVAGIIALRP 159
Query: 1071 KVLVLDEATASVDTATDNQIQQTLRQ-----HFSDCTVVTIAHRITSVLDSAMVLLLNHG 1125
++++LDE+T+ +D +I + + + TV++I H + S +L++ G
Sbjct: 160 EIIILDESTSMLDPTGRQEIMRVIHEIKEKYQL---TVLSITHDLDEAASSDRILVMKAG 216
Query: 1126 LIKEYDSPTKLL 1137
I + +P++L
Sbjct: 217 EIIKEAAPSELF 228
|
Length = 277 |
| >gnl|CDD|213233 cd03266, ABC_NatA_sodium_exporter, ATP-binding cassette domain of the Na+ transporter | Back alignment and domain information |
|---|
Score = 48.5 bits (116), Expect = 6e-06
Identities = 44/198 (22%), Positives = 83/198 (41%), Gaps = 24/198 (12%)
Query: 950 IRHLQVRYAPNLPLVLRGRTGSGKSTLIQTLFRIVESTAGHILIDGKDISLIGLHDLRTR 1009
+ + P L G G+GK+T ++ L ++E AG +DG D+ + R R
Sbjct: 21 VDGVSFTVKPGEVTGLLGPNGAGKTTTLRMLAGLLEPDAGFATVDGFDVVKEPA-EARRR 79
Query: 1010 LSIIPQDPTMFEG-TTRSNLD------PLEEHADEQIWEAL-DKCQLGDEVRKKKGKLDS 1061
L + +++ T R NL+ L+ E L D+ + + + ++ G S
Sbjct: 80 LGFVSDSTGLYDRLTARENLEYFAGLYGLKGDELTARLEELADRLGMEELLDRRVGGF-S 138
Query: 1062 QG--------RVLLKKSKVLVLDEATASVDTATDNQIQQTLRQHFSD-CTVVTIAHR--- 1109
G R L+ VL+LDE T +D +++ +RQ + ++ H
Sbjct: 139 TGMRQKVAIARALVHDPPVLLLDEPTTGLDVMATRALREFIRQLRALGKCILFSTHIMQE 198
Query: 1110 ITSVLDSAMVLLLNHGLI 1127
+ + D V++L+ G +
Sbjct: 199 VERLCDR--VVVLHRGRV 214
|
NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the proton-motive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunorubicin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single integral membrane protein. Length = 218 |
| >gnl|CDD|237453 PRK13633, PRK13633, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 48.9 bits (117), Expect = 6e-06
Identities = 46/197 (23%), Positives = 95/197 (48%), Gaps = 21/197 (10%)
Query: 963 LVLRGRTGSGKSTLIQTLFRIVESTAGHILIDGKDISLIG-LHDLRTRLSIIPQDP---- 1017
LV+ GR GSGKST+ + + ++ + G + +DG D S L D+R + ++ Q+P
Sbjct: 39 LVILGRNGSGKSTIAKHMNALLIPSEGKVYVDGLDTSDEENLWDIRNKAGMVFQNPDNQI 98
Query: 1018 --TMFEGTTR---SNLDPLEEHADEQIWEALDKCQLGDEVRKKKGKLDSQGR-------- 1064
T+ E NL E E++ E+L K + E R+ L S G+
Sbjct: 99 VATIVEEDVAFGPENLGIPPEEIRERVDESLKKVGMY-EYRRHAPHLLSGGQKQRVAIAG 157
Query: 1065 VLLKKSKVLVLDEATASVDTATDNQIQQTLRQ--HFSDCTVVTIAHRITSVLDSAMVLLL 1122
+L + + ++ DE TA +D + ++ T+++ T++ I H + +++ ++++
Sbjct: 158 ILAMRPECIIFDEPTAMLDPSGRREVVNTIKELNKKYGITIILITHYMEEAVEADRIIVM 217
Query: 1123 NHGLIKEYDSPTKLLEN 1139
+ G + +P ++ +
Sbjct: 218 DSGKVVMEGTPKEIFKE 234
|
Length = 280 |
| >gnl|CDD|236997 PRK11831, PRK11831, putative ABC transporter ATP-binding protein YrbF; Provisional | Back alignment and domain information |
|---|
Score = 49.0 bits (117), Expect = 6e-06
Identities = 67/273 (24%), Positives = 104/273 (38%), Gaps = 48/273 (17%)
Query: 353 NSDTAIEIIDGSFSWDFSSPNPTLRNINLKVFHGMRVAVCGTVGSGKSSCLSCILGGVPK 412
+ +++ SF+ NI+L V G A+ G G GK++ L I G +
Sbjct: 3 SVANLVDMRGVSFT---RGNRCIFDNISLTVPRGKITAIMGPSGIGKTTLLRLIGGQIAP 59
Query: 413 ESGIIRLCG--------TKAYVAQ---SPWIQSG------KIEENILFGKEMDRERYERV 455
+ G I G ++ Y + S QSG + +N+ + + +
Sbjct: 60 DHGEILFDGENIPAMSRSRLYTVRKRMSMLFQSGALFTDMNVFDNVAYPLREHTQLPAPL 119
Query: 456 LEACSLKKDLEVLPFGDQTIIGERGI------NLSGGQKQRIQIARPLYQDADIFLLDDP 509
L + + K LE +G RG LSGG +R +AR + + D+ + D+P
Sbjct: 120 LHSTVMMK-LEA--------VGLRGAAKLMPSELSGGMARRAALARAIALEPDLIMFDEP 170
Query: 510 FSPVDDHTGAHLFKFCWVSSSK---TVIYATHQV-EFLPAADLILVIKDGKITQAGKYSD 565
F D T L K +S T + +H V E L AD ++ D KI G
Sbjct: 171 FVGQDPITMGVLVKLISELNSALGVTCVVVSHDVPEVLSIADHAYIVADKKIVAHGSAQA 230
Query: 566 ILNSGTDFMELVGAHKQALSGLDSIDRGPVSER 598
L + D + LD I GPV R
Sbjct: 231 -LQANPD--------PRVRQFLDGIADGPVPFR 254
|
Length = 269 |
| >gnl|CDD|233207 TIGR00955, 3a01204, The Eye Pigment Precursor Transporter (EPP) Family protein | Back alignment and domain information |
|---|
Score = 50.0 bits (120), Expect = 6e-06
Identities = 58/223 (26%), Positives = 97/223 (43%), Gaps = 49/223 (21%)
Query: 376 LRNINLKVFHGMRVAVCGTVGSGKSSCLSCILGGVPKE---SGIIRLCGTK--------- 423
L+N++ G +AV G+ G+GK++ ++ + PK SG + L G
Sbjct: 41 LKNVSGVAKPGELLAVMGSSGAGKTTLMNALAFRSPKGVKGSGSVLLNGMPIDAKEMRAI 100
Query: 424 -AYVAQSP-WIQSGKIEENILF----------GKEMDRERYERVLEACSLKKDLEVLPFG 471
AYV Q +I + + E+++F K+ RER + VL+A L+K
Sbjct: 101 SAYVQQDDLFIPTLTVREHLMFQAHLRMPRRVTKKEKRERVDEVLQALGLRK-------C 153
Query: 472 DQTIIGERGI--NLSGGQKQRIQIARPLYQDADIFLLDDPFSPVDDHTGAH----LFKFC 525
T IG G LSGG+++R+ A L D + D+P S +D L
Sbjct: 154 ANTRIGVPGRVKGLSGGERKRLAFASELLTDPPLLFCDEPTSGLDSFMAYSVVQVLKGLA 213
Query: 526 WVSSSKTVIYATHQVEFLPAADL------ILVIKDGKITQAGK 562
KT+I HQ P+++L I+++ +G++ G
Sbjct: 214 --QKGKTIICTIHQ----PSSELFELFDKIILMAEGRVAYLGS 250
|
[Transport and binding proteins, Other]. Length = 617 |
| >gnl|CDD|132302 TIGR03258, PhnT, 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT | Back alignment and domain information |
|---|
Score = 49.2 bits (117), Expect = 7e-06
Identities = 47/229 (20%), Positives = 95/229 (41%), Gaps = 28/229 (12%)
Query: 945 HGEVNIRHLQVRYAPNLPLVLRGRTGSGKSTLIQTLFRIVES--TAGHILIDGKDISLIG 1002
+ L + L L G++G GK+TL++ + V++ G I I +D++
Sbjct: 16 GANTVLDDLSLEIEAGELLALIGKSGCGKTTLLRAIAGFVKAAGLTGRIAIADRDLTHAP 75
Query: 1003 LHDLRTRLSIIPQDPTMFEGTT---------RSNLDPLEEHADEQIWEALDKCQLGDEVR 1053
H + L+++ Q+ +F R+ P + A E++ +AL LGD
Sbjct: 76 PH--KRGLALLFQNYALFPHLKVEDNVAFGLRAQKMPKADIA-ERVADALKLVGLGDAAA 132
Query: 1054 KKKGKLDS--QGRVLLKKS-----KVLVLDEATASVDTATDNQIQQ---TLRQHFSDCTV 1103
+L Q R+ + ++ VL+LDE +++D +++ L + + T+
Sbjct: 133 HLPAQLSGGMQQRIAIARAIAIEPDVLLLDEPLSALDANIRANMREEIAALHEELPELTI 192
Query: 1104 VTIAHRITSVLDSA-MVLLLNHGLIKEYDSPTKLLENKSSSFAQLVAEY 1151
+ + H L A ++ G + + P L + + F AE+
Sbjct: 193 LCVTHDQDDALTLADKAGIMKDGRLAAHGEPQALYDAPADGF---AAEF 238
|
This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate. Length = 362 |
| >gnl|CDD|237651 PRK14266, PRK14266, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 48.4 bits (115), Expect = 7e-06
Identities = 48/166 (28%), Positives = 72/166 (43%), Gaps = 33/166 (19%)
Query: 376 LRNINLKVFHGMRVAVCGTVGSGKSSCLSCI-----LGGVPKESGIIRLCGTKAY----- 425
L+N+NL + A+ G G GKS+ + + L + G I L G Y
Sbjct: 19 LKNVNLDIPKNSVTALIGPSGCGKSTFIRTLNRMNDLIPGFRHEGHIYLDGVDIYDPAVD 78
Query: 426 ----------VAQSPWIQSGKIEENILFG----KEMDRERYERVLEACSLKKDL---EVL 468
V Q P I +N+ +G E D + E +E SLK EV
Sbjct: 79 VVELRKKVGMVFQKPNPFPKSIFDNVAYGLRIHGEDDEDFIEERVEE-SLKAAALWDEVK 137
Query: 469 PFGDQTIIGERGINLSGGQKQRIQIARPLYQDADIFLLDDPFSPVD 514
D++ +G LSGGQ+QR+ IAR + ++ L+D+P S +D
Sbjct: 138 DKLDKSALG-----LSGGQQQRLCIARTIAVSPEVILMDEPCSALD 178
|
Length = 250 |
| >gnl|CDD|213232 cd03265, ABC_DrrA, Daunorubicin/doxorubicin resistance ATP-binding protein | Back alignment and domain information |
|---|
Score = 48.1 bits (115), Expect = 7e-06
Identities = 45/212 (21%), Positives = 87/212 (41%), Gaps = 39/212 (18%)
Query: 376 LRNINLKVFHGMRVAVCGTVGSGKSSCLSCILGGVPKESGIIRLCGTKA----------- 424
+R ++ +V G + G G+GK++ + + + SG + G
Sbjct: 16 VRGVSFRVRRGEIFGLLGPNGAGKTTTIKMLTTLLKPTSGRATVAGHDVVREPREVRRRI 75
Query: 425 -YVAQSPWIQSGKI-EENI-LFGK------EMDRERYERVLEACSLKKDLEVLPFGDQTI 475
V Q + EN+ + + RER + +L+ + +L D+ +
Sbjct: 76 GIVFQDLSVDDELTGWENLYIHARLYGVPGAERRERIDELLDF------VGLLEAADRLV 129
Query: 476 IGERGINLSGGQKQRIQIARPLYQDADIFLLDDPFSPVDDHTGAHLFKFCWVSSSK---- 531
SGG ++R++IAR L ++ LD+P +D T AH++++ + K
Sbjct: 130 K-----TYSGGMRRRLEIARSLVHRPEVLFLDEPTIGLDPQTRAHVWEY--IEKLKEEFG 182
Query: 532 -TVIYATHQVEFLPA-ADLILVIKDGKITQAG 561
T++ TH +E D + +I G+I G
Sbjct: 183 MTILLTTHYMEEAEQLCDRVAIIDHGRIIAEG 214
|
DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 220 |
| >gnl|CDD|224026 COG1101, PhnK, ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 48.5 bits (116), Expect = 7e-06
Identities = 46/169 (27%), Positives = 70/169 (41%), Gaps = 31/169 (18%)
Query: 373 NPTLRNINLKVFHGMRVAVCGTVGSGKSSCLSCILGGVPKESGIIRLCGTK--------- 423
L ++L++ G V V G+ G+GKS+ L+ I G + SG I + G
Sbjct: 19 KRALNGLSLEIAEGDFVTVIGSNGAGKSTLLNAIAGDLKPTSGQILIDGVDVTKKSVAKR 78
Query: 424 ----AYVAQSPWIQSG---KIEENILFGKEMDRERY------ERVLEACSLKKDLEVLPF 470
A V Q P + IEEN+ + ++R ER S ++ L L
Sbjct: 79 ANLLARVFQDPLAGTAPELTIEENLALAESRGKKRGLSSALNERRRS--SFRERLARLGL 136
Query: 471 GDQTIIGERGINLSGGQKQRIQIARPLYQDADIFLLDDPFSPVDDHTGA 519
G + + +R LSGGQ+Q + + I LL D+HT A
Sbjct: 137 GLENRLSDRIGLLSGGQRQALSLLMATLHPPKILLL-------DEHTAA 178
|
Length = 263 |
| >gnl|CDD|227118 COG4778, PhnL, ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 48.2 bits (115), Expect = 7e-06
Identities = 45/170 (26%), Positives = 67/170 (39%), Gaps = 39/170 (22%)
Query: 374 PTLRNINLKVFHGMRVAVCGTVGSGKSSCLSCILGGVPKESGIIR---------LCG--- 421
P LRN++L V G V + G GSGKS+ L + + G I L
Sbjct: 25 PVLRNVSLSVNAGECVVLHGPSGSGKSTLLRSLYANYLPDEGQILVRHEGEWVDLVTAEP 84
Query: 422 ---------TKAYVAQ----SPWIQSGKIEENILFGKEMDRE----RYERVLEACSLKKD 464
T YV+Q P + + + L + + RE + +L +L +
Sbjct: 85 REVLEVRRTTIGYVSQFLRVIPRVSALDVVAEPLLARGVPREVARAKAADLLTRLNLPER 144
Query: 465 LEVLPFGDQTIIGERGINLSGGQKQRIQIARPLYQDADIFLLDDPFSPVD 514
L L SGG++QR+ IAR D I LLD+P + +D
Sbjct: 145 LWSLAPA----------TFSGGEQQRVNIARGFIVDYPILLLDEPTASLD 184
|
Length = 235 |
| >gnl|CDD|182331 PRK10247, PRK10247, putative ABC transporter ATP-binding protein YbbL; Provisional | Back alignment and domain information |
|---|
Score = 48.2 bits (115), Expect = 8e-06
Identities = 40/158 (25%), Positives = 66/158 (41%), Gaps = 20/158 (12%)
Query: 373 NPTLRNINLKVFHGMRVAVCGTVGSGKSSCLSCILGGVPKESGIIRLCGTK--------- 423
L NI+ + G + G G GKS+ L + + SG + G
Sbjct: 20 AKILNNISFSLRAGEFKLITGPSGCGKSTLLKIVASLISPTSGTLLFEGEDISTLKPEIY 79
Query: 424 ----AYVAQSPWIQSGKIEENILFGKEMDRERYERVLEACSLKKDLEVLPFGDQTIIGER 479
+Y AQ+P + + +N++F ++ ++ + DLE F I +
Sbjct: 80 RQQVSYCAQTPTLFGDTVYDNLIFPWQIRNQQPDPA----IFLDDLE--RFALPDTILTK 133
Query: 480 GIN-LSGGQKQRIQIARPLYQDADIFLLDDPFSPVDDH 516
I LSGG+KQRI + R L + LLD+ S +D+
Sbjct: 134 NIAELSGGEKQRISLIRNLQFMPKVLLLDEITSALDES 171
|
Length = 225 |
| >gnl|CDD|172757 PRK14269, PRK14269, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 48.5 bits (115), Expect = 8e-06
Identities = 48/169 (28%), Positives = 71/169 (42%), Gaps = 28/169 (16%)
Query: 369 FSSPNPTLRNINLKVFHGMRVAVCGTVGSGKSSCLSC----------------ILGGVPK 412
F L +IN+++ A+ G G GKS+ L C I G K
Sbjct: 11 FYGKKQALFDINMQIEQNKITALIGASGCGKSTFLRCFNRMNDKIAKIDGLVEIEGKDVK 70
Query: 413 ESGIIRLCGTKAYVAQSPWIQSGKIEENI-----LFGKEMDRERYERVLEACSLKKDL-- 465
++ L V Q P + I ENI L G +++ E ++ C K L
Sbjct: 71 NQDVVALRKNVGMVFQQPNVFVKSIYENISYAPKLHGMIKNKDEEEALVVDCLQKVGLFE 130
Query: 466 EVLPFGDQTIIGERGINLSGGQKQRIQIARPLYQDADIFLLDDPFSPVD 514
EV + + + + LSGGQ+QR+ IAR L + LLD+P S +D
Sbjct: 131 EV-----KDKLKQNALALSGGQQQRLCIARALAIKPKLLLLDEPTSALD 174
|
Length = 246 |
| >gnl|CDD|184594 PRK14264, PRK14264, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 49.1 bits (117), Expect = 8e-06
Identities = 44/166 (26%), Positives = 66/166 (39%), Gaps = 49/166 (29%)
Query: 390 AVCGTVGSGKSSCLSCI------LGGVPKESGIIRLCGTKAY---------------VAQ 428
A+ G G GKS+ L C+ + + G + L G Y V Q
Sbjct: 75 ALIGPSGCGKSTFLRCLNRMNDRIKAARID-GSVELDGQDIYQDGVNLVELRKRVGMVFQ 133
Query: 429 SPWIQSGKIEENILFG--------------------KEMDRERYERVLEACSLKKDLEVL 468
SP I ENI +G K+ + E ER L +L ++
Sbjct: 134 SPNPFPKSIRENISYGPRKHGDINTGLLARLLGRDDKDAEDELVERSLRQAALWDEV--- 190
Query: 469 PFGDQTIIGERGINLSGGQKQRIQIARPLYQDADIFLLDDPFSPVD 514
+ + + LSGGQ+QR+ IAR L D ++ L+D+P S +D
Sbjct: 191 ----NDRLDDNALGLSGGQQQRLCIARCLAVDPEVILMDEPASALD 232
|
Length = 305 |
| >gnl|CDD|236992 PRK11819, PRK11819, putative ABC transporter ATP-binding protein; Reviewed | Back alignment and domain information |
|---|
Score = 49.7 bits (120), Expect = 8e-06
Identities = 62/235 (26%), Positives = 97/235 (41%), Gaps = 57/235 (24%)
Query: 376 LRNINLKVFHGMRVAVCGTVGSGKSSCLSCILGGVPKES-GIIRLC-GTK-AYVAQSPWI 432
L++I+L F G ++ V G G+GKS+ L I+ GV KE G R G K Y+ Q P +
Sbjct: 23 LKDISLSFFPGAKIGVLGLNGAGKSTLLR-IMAGVDKEFEGEARPAPGIKVGYLPQEPQL 81
Query: 433 QSGK-----IEE---------------NILFGKEMD--------RERYERVLEACS---L 461
K +EE + + + + +++A L
Sbjct: 82 DPEKTVRENVEEGVAEVKAALDRFNEIYAAYAEPDADFDALAAEQGELQEIIDAADAWDL 141
Query: 462 KKDLEV------LPFGDQTIIGERGINLSGGQKQRIQIARPLYQDADIFLLDDPFSPVDD 515
LE+ P D + LSGG+++R+ + R L + D+ LLD+P + +D
Sbjct: 142 DSQLEIAMDALRCPPWDAKVT-----KLSGGERRRVALCRLLLEKPDMLLLDEPTNHLDA 196
Query: 516 HTGA----HLFKFCWVSSSKTVIYATHQVEFLP-AADLILVIKDGK-ITQAGKYS 564
+ A L + TV+ TH FL A IL + G+ I G YS
Sbjct: 197 ESVAWLEQFLHDY-----PGTVVAVTHDRYFLDNVAGWILELDRGRGIPWEGNYS 246
|
Length = 556 |
| >gnl|CDD|130355 TIGR01288, nodI, ATP-binding ABC transporter family nodulation protein NodI | Back alignment and domain information |
|---|
Score = 48.8 bits (116), Expect = 8e-06
Identities = 69/283 (24%), Positives = 122/283 (43%), Gaps = 57/283 (20%)
Query: 354 SDTAIEIIDGSFSWDFSSPNPTLRNINLKVFHGMRVAVCGTVGSGKSSCLSCILGGVPKE 413
S+ AI+++ S S+ + +++ + G + G G+GKS+ +LG + +
Sbjct: 1 SNVAIDLVGVSKSY---GDKVVVNDLSFTIARGECFGLLGPNGAGKSTIARMLLGMISPD 57
Query: 414 SGIIRLCG----TKAYVAQS-----PWIQSGKIE----ENIL-FGK--EMDRERYERV-- 455
G I + G ++A +A+ P + E EN+L FG+ M E V
Sbjct: 58 RGKITVLGEPVPSRARLARVAIGVVPQFDNLDPEFTVRENLLVFGRYFGMSTREIEAVIP 117
Query: 456 --LEACSLKKDLEVLPFGDQTIIGERGINLSGGQKQRIQIARPLYQDADIFLLDDPFSPV 513
LE L+ +V R LSGG K+R+ +AR L D + +LD+P + +
Sbjct: 118 SLLEFARLESKADV-----------RVALLSGGMKRRLTLARALINDPQLLILDEPTTGL 166
Query: 514 DDHTGAHLFKFCW------VSSSKTVIYATHQVEFLPAA----DLILVIKDGKITQAGKY 563
D H HL W ++ KT++ TH F+ A D + V++ G+ G+
Sbjct: 167 DPH-ARHLI---WERLRSLLARGKTILLTTH---FMEEAERLCDRLCVLESGRKIAEGRP 219
Query: 564 SDILNS--GTDFMELVGAHKQALSGLDSIDRGPVSERKSINKE 604
+++ G + +E+ G L L P + R ++ E
Sbjct: 220 HALIDEQIGCNVIEIYGGDPDELREL----IRPYARRIEVSGE 258
|
This protein is required for normal nodulation by nitrogen-fixing root nodule bacteria such as Mesorhizobium loti. It is a member of the family of ABC transporter ATP binding proteins and works with NodJ to export a nodulation signal molecule. This model does not recognize the highly divergent NodI from Azorhizobium caulinodans [Cellular processes, Other, Transport and binding proteins, Other]. Length = 303 |
| >gnl|CDD|172730 PRK14242, PRK14242, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 48.2 bits (115), Expect = 9e-06
Identities = 46/200 (23%), Positives = 83/200 (41%), Gaps = 45/200 (22%)
Query: 951 RHLQVRYAPNLPL-------------VLRGRTGSGKSTLIQTLFRI-----VESTAGHIL 992
R L Y L L G +G GKST ++ L R+ G IL
Sbjct: 10 RGLSFFYGDFQALHDISLEFEQNQVTALIGPSGCGKSTFLRCLNRMNDLIPGARVEGEIL 69
Query: 993 IDGKDI--SLIGLHDLRTRLSIIPQDP-----TMFEGTT---RSNLDPLEEHADEQIWEA 1042
+DG++I + + +LR R+ ++ Q P ++FE R N + + E++ +
Sbjct: 70 LDGENIYDPHVDVVELRRRVGMVFQKPNPFPKSIFENVAYGLRVNGVKDKAYLAERVERS 129
Query: 1043 LDKCQLGDEVRKKKGKLDSQG--------------RVLLKKSKVLVLDEATASVDTATDN 1088
L L DEV K +L R L + +VL++DE +++D
Sbjct: 130 LRHAALWDEV---KDRLHESALGLSGGQQQRLCIARALAVEPEVLLMDEPASALDPIATQ 186
Query: 1089 QIQQTLRQHFSDCTVVTIAH 1108
+I++ + + + T++ + H
Sbjct: 187 KIEELIHELKARYTIIIVTH 206
|
Length = 253 |
| >gnl|CDD|131816 TIGR02769, nickel_nikE, nickel import ATP-binding protein NikE | Back alignment and domain information |
|---|
Score = 48.3 bits (115), Expect = 9e-06
Identities = 55/210 (26%), Positives = 85/210 (40%), Gaps = 25/210 (11%)
Query: 965 LRGRTGSGKSTLIQTLFRIVESTAGHILIDGKDISLI---GLHDLRTRLSIIPQD-PTMF 1020
L GR+G GKSTL + L + + G + G+D+ + R + ++ QD P+
Sbjct: 42 LLGRSGCGKSTLARLLLGLEKPAQGTVSFRGQDLYQLDRKQRRAFRRDVQLVFQDSPSAV 101
Query: 1021 --EGTTRSNL-DPLEEHAD-------EQIWEALDKCQLGDEVRKKKGKLDSQG------- 1063
T R + +PL +I E LD L E K + S G
Sbjct: 102 NPRMTVRQIIGEPLRHLTSLDESEQKARIAELLDMVGLRSEDADKLPRQLSGGQLQRINI 161
Query: 1064 -RVLLKKSKVLVLDEATASVDTATDNQIQQTLR--QHFSDCTVVTIAHRITSVLD-SAMV 1119
R L K K++VLDEA +++D I + LR Q + I H + V V
Sbjct: 162 ARALAVKPKLIVLDEAVSNLDMVLQAVILELLRKLQQAFGTAYLFITHDLRLVQSFCQRV 221
Query: 1120 LLLNHGLIKEYDSPTKLLENKSSSFAQLVA 1149
+++ G I E +LL K + L +
Sbjct: 222 AVMDKGQIVEECDVAQLLSFKHPAGRNLQS 251
|
This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase [Transport and binding proteins, Cations and iron carrying compounds]. Length = 265 |
| >gnl|CDD|188353 TIGR03608, L_ocin_972_ABC, putative bacteriocin export ABC transporter, lactococcin 972 group | Back alignment and domain information |
|---|
Score = 47.6 bits (114), Expect = 1e-05
Identities = 38/150 (25%), Positives = 71/150 (47%), Gaps = 21/150 (14%)
Query: 967 GRTGSGKSTLIQTLFRIVESTAGHILIDGKDISLIGLHD----LRTRLSIIPQDPTMFEG 1022
G +GSGKSTL+ + + + +G + ++G++ + R +L + Q+ + E
Sbjct: 31 GESGSGKSTLLNIIGLLEKFDSGQVYLNGQETPPLNSKKASKFRREKLGYLFQNFALIEN 90
Query: 1023 -TTRSNLD-PLEEHA------DEQIWEALDKCQLGDEVRKKKGKLDSQG--------RVL 1066
T NLD L+ E+ EAL+K L ++++K +L S G R +
Sbjct: 91 ETVEENLDLGLKYKKLSKKEKREKKKEALEKVGLNLKLKQKIYEL-SGGEQQRVALARAI 149
Query: 1067 LKKSKVLVLDEATASVDTATDNQIQQTLRQ 1096
LK +++ DE T S+D +++ L +
Sbjct: 150 LKPPPLILADEPTGSLDPKNRDEVLDLLLE 179
|
A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins [Cellular processes, Toxin production and resistance, Transport and binding proteins, Unknown substrate]. Length = 206 |
| >gnl|CDD|234199 TIGR03410, urea_trans_UrtE, urea ABC transporter, ATP-binding protein UrtE | Back alignment and domain information |
|---|
Score = 47.5 bits (114), Expect = 1e-05
Identities = 43/154 (27%), Positives = 71/154 (46%), Gaps = 34/154 (22%)
Query: 967 GRTGSGKSTLIQTLFRIVESTAGHILIDGKDISLIGLHDLRTRLSI--IPQD----PTMF 1020
GR G GK+TL++TL ++ +G I +DG+DI+ + H+ R R I +PQ P +
Sbjct: 33 GRNGVGKTTLLKTLMGLLPVKSGSIRLDGEDITKLPPHE-RARAGIAYVPQGREIFPRL- 90
Query: 1021 EGTTRSNL----DPL---EEHADEQIWE---ALDKCQLGDEVRKKKGKLDSQG------- 1063
T NL L ++I+E L E+ ++G S G
Sbjct: 91 --TVEENLLTGLAALPRRSRKIPDEIYELFPVL------KEMLGRRGGDLSGGQQQQLAI 142
Query: 1064 -RVLLKKSKVLVLDEATASVDTATDNQIQQTLRQ 1096
R L+ + K+L+LDE T + + I + +R+
Sbjct: 143 ARALVTRPKLLLLDEPTEGIQPSIIKDIGRVIRR 176
|
Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity [Transport and binding proteins, Amino acids, peptides and amines]. Length = 230 |
| >gnl|CDD|106587 PRK13644, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 47.7 bits (113), Expect = 1e-05
Identities = 49/196 (25%), Positives = 89/196 (45%), Gaps = 24/196 (12%)
Query: 967 GRTGSGKSTLIQTLFRIVESTAGHILIDGKDI-SLIGLHDLRTRLSIIPQDP-TMFEGTT 1024
G+ GSGKSTL L ++ G +L+ G D L +R + I+ Q+P T F G T
Sbjct: 35 GKNGSGKSTLALHLNGLLRPQKGKVLVSGIDTGDFSKLQGIRKLVGIVFQNPETQFVGRT 94
Query: 1025 RSN----------LDPLEEHADEQIWEALDKCQLGDEVRKKKGKLDSQGR--------VL 1066
L P+E +++ AL + L + R + K S G+ +L
Sbjct: 95 VEEDLAFGPENLCLPPIE--IRKRVDRALAEIGLE-KYRHRSPKTLSGGQGQCVALAGIL 151
Query: 1067 LKKSKVLVLDEATASVDTATDNQIQQTLRQ-HFSDCTVVTIAHRITSVLDSAMVLLLNHG 1125
+ + L+ DE T+ +D + + + +++ H T+V I H + + D+ +++++ G
Sbjct: 152 TMEPECLIFDEVTSMLDPDSGIAVLERIKKLHEKGKTIVYITHNLEELHDADRIIVMDRG 211
Query: 1126 LIKEYDSPTKLLENKS 1141
I P +L + S
Sbjct: 212 KIVLEGEPENVLSDVS 227
|
Length = 274 |
| >gnl|CDD|213267 cd03300, ABC_PotA_N, ATP-binding cassette domain of the polyamine transporter | Back alignment and domain information |
|---|
Score = 48.0 bits (115), Expect = 1e-05
Identities = 61/207 (29%), Positives = 100/207 (48%), Gaps = 27/207 (13%)
Query: 965 LRGRTGSGKSTLIQTLFRIVESTAGHILIDGKDISLIGLHDLRTRLSIIPQD----P--T 1018
L G +G GK+TL++ + T+G IL+DGKDI+ + H + ++ + Q+ P T
Sbjct: 31 LLGPSGCGKTTLLRLIAGFETPTSGEILLDGKDITNLPPH--KRPVNTVFQNYALFPHLT 88
Query: 1019 MFE----GTTRSNLDPLEEHADEQIWEALDKCQLGDEVRKKKGKLD--SQGRV-----LL 1067
+FE G L E E++ EALD QL +K +L Q RV L+
Sbjct: 89 VFENIAFGLRLKKLPKAE--IKERVAEALDLVQLEGYANRKPSQLSGGQQQRVAIARALV 146
Query: 1068 KKSKVLVLDEATASVDTATDNQIQQTLR--QHFSDCTVVTIAHRITSVLD-SAMVLLLNH 1124
+ KVL+LDE ++D +Q L+ Q T V + H L S + ++N
Sbjct: 147 NEPKVLLLDEPLGALDLKLRKDMQLELKRLQKELGITFVFVTHDQEEALTMSDRIAVMNK 206
Query: 1125 GLIKEYDSPTKLLENKSSSFAQLVAEY 1151
G I++ +P ++ E ++ F VA++
Sbjct: 207 GKIQQIGTPEEIYEEPANRF---VADF 230
|
PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D. PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 232 |
| >gnl|CDD|184586 PRK14240, PRK14240, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 47.8 bits (114), Expect = 1e-05
Identities = 46/169 (27%), Positives = 76/169 (44%), Gaps = 39/169 (23%)
Query: 376 LRNINLKVFHGMRVAVCGTVGSGKSSCLSC------ILGGVPKESGIIRLCGTKAY---- 425
L+ INL + A+ G G GKS+ L ++ V K G + L G Y
Sbjct: 19 LKKINLDIEENQVTALIGPSGCGKSTFLRTLNRMNDLIPSV-KIEGEVLLDGQDIYKSDI 77
Query: 426 -----------VAQSPWIQSGKIEENILFG---------KEMDRERYERVLEACSLKKDL 465
V Q P I +N+ +G K++D E E+ L+ +L ++
Sbjct: 78 DVNQLRKRVGMVFQQPNPFPMSIYDNVAYGPRTHGIKDKKKLD-EIVEKSLKGAALWDEV 136
Query: 466 EVLPFGDQTIIGERGINLSGGQKQRIQIARPLYQDADIFLLDDPFSPVD 514
+ D+ + + + LSGGQ+QR+ IAR L + ++ L+D+P S +D
Sbjct: 137 K-----DR--LKKSALGLSGGQQQRLCIARALAVEPEVLLMDEPTSALD 178
|
Length = 250 |
| >gnl|CDD|184585 PRK14239, PRK14239, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 47.8 bits (114), Expect = 1e-05
Identities = 55/212 (25%), Positives = 97/212 (45%), Gaps = 35/212 (16%)
Query: 959 PNLPLVLRGRTGSGKSTLIQTLFRIVE-----STAGHILIDGKDI--SLIGLHDLRTRLS 1011
PN L G +GSGKSTL++++ R+ + + G I+ +G +I DLR +
Sbjct: 30 PNEITALIGPSGSGKSTLLRSINRMNDLNPEVTITGSIVYNGHNIYSPRTDTVDLRKEIG 89
Query: 1012 IIPQDPTMFEGTTRSN------LDPLEEHA--DEQIWEALDKCQLGDEVRKKKGKL-DSQ 1062
++ Q P F + N L +++ DE + ++L + DEV K +L DS
Sbjct: 90 MVFQQPNPFPMSIYENVVYGLRLKGIKDKQVLDEAVEKSLKGASIWDEV---KDRLHDSA 146
Query: 1063 -------------GRVLLKKSKVLVLDEATASVDTATDNQIQQTLRQHFSDCTVVTIAHR 1109
RVL K+++LDE T+++D + +I++TL D T++ +
Sbjct: 147 LGLSGGQQQRVCIARVLATSPKIILLDEPTSALDPISAGKIEETLLGLKDDYTMLLVTRS 206
Query: 1110 I--TSVLDSAMVLLLNHGLIKEYDSPTKLLEN 1139
+ S + L+ LI EY+ ++ N
Sbjct: 207 MQQASRISDRTGFFLDGDLI-EYNDTKQMFMN 237
|
Length = 252 |
| >gnl|CDD|172745 PRK14257, PRK14257, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 48.6 bits (115), Expect = 1e-05
Identities = 66/265 (24%), Positives = 111/265 (41%), Gaps = 38/265 (14%)
Query: 332 IASFLCLEGLQTDVLEKMPRGNSDTAIEIIDGSFSWDFSSPNPTLRNINLKVFHGMRVAV 391
+ FL + Q D+L++ N EI + +F W + L ++NL + A
Sbjct: 57 LKQFLNKKKTQVDLLKE--DFNHANVFEIRNFNF-WYMNRTKHVLHDLNLDIKRNKVTAF 113
Query: 392 CGTVGSGKSSCL------SCILGGVPKESGIIRLCGTK---------------AYVAQSP 430
G G GKS+ L + ++ G E G I GT V Q P
Sbjct: 114 IGPSGCGKSTFLRNLNQLNDLIEGTSHE-GEIYFLGTNTRSKKISSLELRTRIGMVFQKP 172
Query: 431 WIQSGKIEENILFGKEM----DRERYERVLEACSLKKDLEVLPFGDQTI--IGERGINLS 484
I +N+ +G DR+ E+++E K L+ D+ + + G LS
Sbjct: 173 TPFEMSIFDNVAYGPRNNGINDRKILEKIVE-----KSLKSAALWDEVKDDLDKAGNALS 227
Query: 485 GGQKQRIQIARPLYQDADIFLLDDPFSPVDDHTGAHLFKFCWVSSSK-TVIYATHQV-EF 542
GGQ+QR+ IAR + + ++ L+D+P S +D A + + K ++I TH + +
Sbjct: 228 GGQQQRLCIARAIALEPEVLLMDEPTSALDPIATAKIEELILELKKKYSIIIVTHSMAQA 287
Query: 543 LPAADLILVIKDGKITQAGKYSDIL 567
+D + G I +AG+ I
Sbjct: 288 QRISDETVFFYQGWIEEAGETKTIF 312
|
Length = 329 |
| >gnl|CDD|183077 PRK11288, araG, L-arabinose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 49.1 bits (118), Expect = 1e-05
Identities = 56/220 (25%), Positives = 96/220 (43%), Gaps = 45/220 (20%)
Query: 374 PTLRN-INLKVFHGMRVAVCGTVGSGKSSCLSCILGGVPKESGIIRLCGTKAYVAQSP-- 430
P LR I+ V G V + G VG+G+S + + G + +G + L G K +SP
Sbjct: 266 PGLREPISFSVRAGEIVGLFGLVGAGRSELMKLLYGATRRTAGQVYLDG-KPIDIRSPRD 324
Query: 431 WIQSG-----------------KIEENI--------LFGKEMDRERYERVLEACSLKKDL 465
I++G + +NI L + R+E A + L
Sbjct: 325 AIRAGIMLCPEDRKAEGIIPVHSVADNINISARRHHLRAGCLINNRWEAEN-ADRFIRSL 383
Query: 466 EV-LPFGDQTIIGERGINLSGGQKQRIQIARPLYQDADIFLLDDPFSPVDDHTGA----- 519
+ P +Q I+ NLSGG +Q+ + R L +D + LLD+P +D GA
Sbjct: 384 NIKTPSREQLIM-----NLSGGNQQKAILGRWLSEDMKVILLDEPTRGID--VGAKHEIY 436
Query: 520 HLFKFCWVSSSKTVIYATHQV-EFLPAADLILVIKDGKIT 558
++ + + V++ + + E L AD I+V+++G+I
Sbjct: 437 NVI-YELAAQGVAVLFVSSDLPEVLGVADRIVVMREGRIA 475
|
Length = 501 |
| >gnl|CDD|184590 PRK14249, PRK14249, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 47.8 bits (113), Expect = 1e-05
Identities = 42/170 (24%), Positives = 83/170 (48%), Gaps = 26/170 (15%)
Query: 967 GRTGSGKSTLIQTLFRIVESTAG-----HILIDGKDISLIGLH--DLRTRLSIIPQDPTM 1019
G +G GKSTL++ L R+ + +G +L+D ++I L +LR R+ ++ Q P
Sbjct: 37 GPSGCGKSTLLRALNRMNDIVSGARLEGAVLLDNENIYSPNLDVVNLRKRVGMVFQQPNP 96
Query: 1020 FEGTTRSNLD--------PLEEHADEQIWEALDKCQLGDEVRK---KKGKLDSQG----- 1063
F + N+ + DE + ++L + L DEV+ K G S G
Sbjct: 97 FPKSIFDNVAFGPRMLGTTAQSRLDEVVEKSLRQAALWDEVKDNLHKSGLALSGGQQQRL 156
Query: 1064 ---RVLLKKSKVLVLDEATASVDTATDNQIQQTLRQHFSDCTVVTIAHRI 1110
RVL + +V+++DE +++D + +I++ +++ + T+ + H +
Sbjct: 157 CIARVLAIEPEVILMDEPCSALDPVSTMRIEELMQELKQNYTIAIVTHNM 206
|
Length = 251 |
| >gnl|CDD|184208 PRK13649, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 47.8 bits (114), Expect = 1e-05
Identities = 67/254 (26%), Positives = 107/254 (42%), Gaps = 50/254 (19%)
Query: 357 AIEIIDGSFSWDFSSP--NPTLRNINLKVFHGMRVAVCGTVGSGKSSCLSCILGGVPKES 414
I + + S+++ +P L ++NL + G A G GSGKS+ + + G
Sbjct: 2 GINLQNVSYTYQAGTPFEGRALFDVNLTIEDGSYTAFIGHTGSGKSTIMQLLNGLHVPTQ 61
Query: 415 GIIRLCGTK-----------------AYVAQSPWIQSGKIEENIL----FGKE---MDRE 450
G +R+ T V Q P +S EE +L FG + + +E
Sbjct: 62 GSVRVDDTLITSTSKNKDIKQIRKKVGLVFQFP--ESQLFEETVLKDVAFGPQNFGVSQE 119
Query: 451 RYERV----LEACSLKKDL-EVLPFGDQTIIGERGINLSGGQKQRIQIARPLYQDADIFL 505
E + L + + L E PF LSGGQ +R+ IA L + I +
Sbjct: 120 EAEALAREKLALVGISESLFEKNPF-----------ELSGGQMRRVAIAGILAMEPKILV 168
Query: 506 LDDPFSPVDDHTGAHL---FKFCWVSSSKTVIYATHQVEFLPA-ADLILVIKDGKITQAG 561
LD+P + +D L FK S T++ TH ++ + AD + V++ GK+ +G
Sbjct: 169 LDEPTAGLDPKGRKELMTLFKKLH-QSGMTIVLVTHLMDDVANYADFVYVLEKGKLVLSG 227
Query: 562 KYSDILNSGTDFME 575
K DI DF+E
Sbjct: 228 KPKDIFQD-VDFLE 240
|
Length = 280 |
| >gnl|CDD|213263 cd03296, ABC_CysA_sulfate_importer, ATP-binding cassette domain of the sulfate transporter | Back alignment and domain information |
|---|
Score = 46.9 bits (112), Expect = 2e-05
Identities = 50/204 (24%), Positives = 93/204 (45%), Gaps = 28/204 (13%)
Query: 965 LRGRTGSGKSTLIQTLFRIVESTAGHILIDGKDISLIGLHDLRTR-LSIIPQDPTMFEGT 1023
L G +GSGK+TL++ + + +G IL G+D + ++ R + + Q +F
Sbjct: 33 LLGPSGSGKTTLLRLIAGLERPDSGTILFGGEDATD---VPVQERNVGFVFQHYALFRHM 89
Query: 1024 T------------RSNLDPLEEHADEQIWEALDKCQLGDEVRKKKGKLDSQG---RVLLK 1068
T + P E ++ E L QL + +L S G RV L
Sbjct: 90 TVFDNVAFGLRVKPRSERPPEAEIRAKVHELLKLVQLDWLADRYPAQL-SGGQRQRVALA 148
Query: 1069 KS-----KVLVLDEATASVDTATDNQIQQTLRQHFSDCTVVTI--AHRITSVLDSA-MVL 1120
++ KVL+LDE ++D ++++ LR+ + V T+ H L+ A V+
Sbjct: 149 RALAVEPKVLLLDEPFGALDAKVRKELRRWLRRLHDELHVTTVFVTHDQEEALEVADRVV 208
Query: 1121 LLNHGLIKEYDSPTKLLENKSSSF 1144
++N G I++ +P ++ ++ +S F
Sbjct: 209 VMNKGRIEQVGTPDEVYDHPASPF 232
|
Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 239 |
| >gnl|CDD|184199 PRK13639, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 47.8 bits (114), Expect = 2e-05
Identities = 43/149 (28%), Positives = 70/149 (46%), Gaps = 20/149 (13%)
Query: 965 LRGRTGSGKSTLIQTLFRIVESTAGHILIDGKDISL--IGLHDLRTRLSIIPQDP--TMF 1020
L G G+GKSTL I++ T+G +LI G+ I L ++R + I+ Q+P +F
Sbjct: 33 LLGPNGAGKSTLFLHFNGILKPTSGEVLIKGEPIKYDKKSLLEVRKTVGIVFQNPDDQLF 92
Query: 1021 EGTTRS-------NLDPLEEHADEQIWEALDKCQLGDEVRKKKGKLDSQGR--------V 1065
T NL +E ++++ EAL + K L S G+ +
Sbjct: 93 APTVEEDVAFGPLNLGLSKEEVEKRVKEALKAVGMEGFENKPPHHL-SGGQKKRVAIAGI 151
Query: 1066 LLKKSKVLVLDEATASVDTATDNQIQQTL 1094
L K +++VLDE T+ +D +QI + L
Sbjct: 152 LAMKPEIIVLDEPTSGLDPMGASQIMKLL 180
|
Length = 275 |
| >gnl|CDD|172747 PRK14259, PRK14259, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 47.5 bits (113), Expect = 2e-05
Identities = 51/196 (26%), Positives = 82/196 (41%), Gaps = 52/196 (26%)
Query: 353 NSDTAIEIIDGSFSW-DFSSPNPTLRNINLKVFHGMRVAVCGTVGSGKSSCL-------- 403
+ + I + + + S+ F + ++N+ + G A+ G G GKS+ L
Sbjct: 9 SKNIIISLQNVTISYGTFEA----VKNVFCDIPRGKVTALIGPSGCGKSTVLRSLNRMND 64
Query: 404 ---SCILGGVPKESGIIRLCGTKAY---------------VAQSPWIQSGKIEENILFGK 445
C L G + GT Y V Q P I ENI FG
Sbjct: 65 LIEGCSL------KGRVLFDGTDLYDPRVDPVEVRRRIGMVFQQPNPFPKSIYENIAFGA 118
Query: 446 -------EMDRERYERVLEACSLKKDLEVLPFGDQTIIGERGINLSGGQKQRIQIARPLY 498
+MD E ER L ++ + + D+ + E G +LSGGQ+QR+ IAR +
Sbjct: 119 RINGYTGDMD-ELVERSLRKAAVWDECK-----DK--LNESGYSLSGGQQQRLCIARTIA 170
Query: 499 QDADIFLLDDPFSPVD 514
+ ++ L+D+P S +D
Sbjct: 171 IEPEVILMDEPCSALD 186
|
Length = 269 |
| >gnl|CDD|182342 PRK10261, PRK10261, glutathione transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 48.3 bits (115), Expect = 2e-05
Identities = 46/154 (29%), Positives = 68/154 (44%), Gaps = 22/154 (14%)
Query: 959 PNLPLVLRGRTGSGKSTLIQTLFRIVESTAGHILIDGKDISLIG---LHDLRTRLSIIPQ 1015
P L L G +GSGKST + L R+VES G I+ +G+ I + L LR + I Q
Sbjct: 349 PGETLSLVGESGSGKSTTGRALLRLVESQGGEIIFNGQRIDTLSPGKLQALRRDIQFIFQ 408
Query: 1016 DPTMF----EGTTRSNLDPLEEH-------ADEQIWEALDKCQLGDEVRKKKGKLDSQG- 1063
DP + S ++PL H A ++ L++ L E + S G
Sbjct: 409 DPYASLDPRQTVGDSIMEPLRVHGLLPGKAAAARVAWLLERVGLLPEHAWRYPHEFSGGQ 468
Query: 1064 -------RVLLKKSKVLVLDEATASVDTATDNQI 1090
R L KV++ DEA +++D + QI
Sbjct: 469 RQRICIARALALNPKVIIADEAVSALDVSIRGQI 502
|
Length = 623 |
| >gnl|CDD|213183 cd03216, ABC_Carb_Monos_I, First domain of the ATP-binding cassette component of monosaccharide transport system | Back alignment and domain information |
|---|
Score = 45.1 bits (108), Expect = 3e-05
Identities = 36/153 (23%), Positives = 65/153 (42%), Gaps = 48/153 (31%)
Query: 965 LRGRTGSGKSTLIQTLFRIVESTAGHILIDGKDISLIGLHD-LRTRLSIIPQDPTMFEGT 1023
L G G+GKSTL++ L + + +G IL+DGK++S D R ++++ Q
Sbjct: 31 LLGENGAGKSTLMKILSGLYKPDSGEILVDGKEVSFASPRDARRAGIAMVYQLSV----- 85
Query: 1024 TRSNLDPLEEHADEQIWEALDKCQLGDEVRKKKGKLDSQGRVLLKKSKVLVLDEATASVD 1083
+ Q+ E R L + +++L+LDE TA++
Sbjct: 86 -----------GERQMVEIA--------------------RALARNARLLILDEPTAAL- 113
Query: 1084 TATDNQIQQ------TLRQHFSDCTVVTIAHRI 1110
T ++++ LR V+ I+HR+
Sbjct: 114 --TPAEVERLFKVIRRLRA--QGVAVIFISHRL 142
|
This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter. Length = 163 |
| >gnl|CDD|226364 COG3845, COG3845, ABC-type uncharacterized transport systems, ATPase components [General function prediction only] | Back alignment and domain information |
|---|
Score = 47.5 bits (114), Expect = 3e-05
Identities = 45/182 (24%), Positives = 78/182 (42%), Gaps = 29/182 (15%)
Query: 965 LRGRTGSGKSTLIQTLFRIVESTAGHILIDGKDISLIGLHD-LRTRLSIIPQDPTMFEGT 1023
L G G+GKSTL++ LF + + +G I +DGK++ + D +R + ++ Q +
Sbjct: 35 LLGENGAGKSTLMKILFGLYQPDSGEIRVDGKEVRIKSPRDAIRLGIGMVHQHFMLVPTL 94
Query: 1024 T-----------RSNLDPLEEHADEQIWEALDKCQLGDEVRKKKGKL--DSQGRV----- 1065
T A +I E ++ L + K L Q RV
Sbjct: 95 TVAENIILGLEPSKGGLIDRRQARARIKELSERYGLPVDPDAKVADLSVGEQQRVEILKA 154
Query: 1066 LLKKSKVLVLDEATASVDTATDNQIQ---QTLRQ-HFSDCTVVTIAHRITSVL---DSAM 1118
L + +++L+LDE TA + T + + LR+ T++ I H++ V+ D
Sbjct: 155 LYRGARLLILDEPTAVL---TPQEADELFEILRRLAAEGKTIIFITHKLKEVMAIADRVT 211
Query: 1119 VL 1120
VL
Sbjct: 212 VL 213
|
Length = 501 |
| >gnl|CDD|131266 TIGR02211, LolD_lipo_ex, lipoprotein releasing system, ATP-binding protein | Back alignment and domain information |
|---|
Score = 46.2 bits (110), Expect = 3e-05
Identities = 38/152 (25%), Positives = 64/152 (42%), Gaps = 25/152 (16%)
Query: 967 GRTGSGKSTLIQTLFRIVESTAGHILIDGKDISLIG---LHDLRTR-LSIIPQ------D 1016
G +GSGKSTL+ L + T+G +L +G+ +S + LR + L I Q D
Sbjct: 38 GSSGSGKSTLLHLLGGLDNPTSGEVLFNGQSLSKLSSNERAKLRNKKLGFIYQFHHLLPD 97
Query: 1017 PTMFEGTTR----SNLDPLEEHADEQIWEALDKCQLGDEVRKKKGKLDSQG--------R 1064
T E + A E+ +E L+K L + + +L S G R
Sbjct: 98 FTALENVAMPLLIGKKSV--KEAKERAYEMLEKVGLEHRINHRPSEL-SGGERQRVAIAR 154
Query: 1065 VLLKKSKVLVLDEATASVDTATDNQIQQTLRQ 1096
L+ + +++ DE T ++D I + +
Sbjct: 155 ALVNQPSLVLADEPTGNLDNNNAKIIFDLMLE 186
|
This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina [Protein fate, Protein and peptide secretion and trafficking]. Length = 221 |
| >gnl|CDD|184584 PRK14238, PRK14238, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 46.8 bits (111), Expect = 3e-05
Identities = 44/164 (26%), Positives = 75/164 (45%), Gaps = 23/164 (14%)
Query: 373 NPTLRNINLKVFHGMRVAVCGTVGSGKSS---CLSCILGGVP--KESGIIRLCGTKAY-- 425
+ L+NINL + A+ G G GKS+ L+ ++ VP K +G I +
Sbjct: 37 DHALKNINLDIHENEVTAIIGPSGCGKSTYIKTLNRMVELVPSVKTTGKILYRDQNIFDK 96
Query: 426 -------------VAQSPWIQSGKIEENILFGKEMDRERYERVLEACSLKKDLEVLPFGD 472
V Q P I +N+ +G ++ + ++ L+ ++K L D
Sbjct: 97 SYSVEELRTNVGMVFQKPNPFPKSIYDNVTYGPKIHGIKDKKTLDEI-VEKSLRGAAIWD 155
Query: 473 QTI--IGERGINLSGGQKQRIQIARPLYQDADIFLLDDPFSPVD 514
+ + + LSGGQ+QR+ IAR L + D+ L+D+P S +D
Sbjct: 156 ELKDRLHDNAYGLSGGQQQRLCIARCLAIEPDVILMDEPTSALD 199
|
Length = 271 |
| >gnl|CDD|183044 PRK11231, fecE, iron-dicitrate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 46.9 bits (112), Expect = 3e-05
Identities = 51/223 (22%), Positives = 88/223 (39%), Gaps = 45/223 (20%)
Query: 376 LRNINLKVFHGMRVAVCGTVGSGKSSCLSCILGGVPKESGIIRLCGTK------------ 423
L +++L + G A+ G G GKS+ L C + +SG + L
Sbjct: 18 LNDLSLSLPTGKITALIGPNGCGKSTLLKCFARLLTPQSGTVFLGDKPISMLSSRQLARR 77
Query: 424 -AYVAQSPWIQSG-KIEENILFGK-----------EMDRERYERVLEACSLKKDLEVLPF 470
A + Q G + E + +G+ D R + +E +
Sbjct: 78 LALLPQHHLTPEGITVRELVAYGRSPWLSLWGRLSAEDNARVNQAME------QTRINHL 131
Query: 471 GDQTIIGERGINLSGGQKQRIQIARPLYQDADIFLLDDPFSPVDDHTGAHLFKFCWV--S 528
D+ R +LSGGQ+QR +A L QD + LLD+P + +D + L + +
Sbjct: 132 ADR-----RLTDLSGGQRQRAFLAMVLAQDTPVVLLDEPTTYLDINHQVELMRLMRELNT 186
Query: 529 SSKTVIYATHQVEFLPAA----DLILVIKDGKITQAGKYSDIL 567
KTV+ H L A D ++V+ +G + G +++
Sbjct: 187 QGKTVVTVLHD---LNQASRYCDHLVVLANGHVMAQGTPEEVM 226
|
Length = 255 |
| >gnl|CDD|224057 COG1134, TagH, ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Score = 46.5 bits (111), Expect = 3e-05
Identities = 48/183 (26%), Positives = 79/183 (43%), Gaps = 27/183 (14%)
Query: 967 GRTGSGKSTLIQTLFRIVESTAGHILIDGKDISLIGL-----HDLRTRLSIIPQDPTMFE 1021
G G+GKSTL++ + I + T+G + + GK LI L +L R +I + +
Sbjct: 60 GHNGAGKSTLLKLIAGIYKPTSGKVKVTGKVAPLIELGAGFDPELTGRENIYLR--GLIL 117
Query: 1022 GTTRSNLDPLEEHADEQIWEALDKCQLGDEVRKKKGKLDSQGRVLLK-------KSKVLV 1074
G TR +D + E ++ +LGD + + S L + +L+
Sbjct: 118 GLTRKEIDEKVD-------EIIEFAELGDFIDQPVKTYSSGMYARLAFSVATHVEPDILL 170
Query: 1075 LDEATASVDTATDNQIQQTLRQHFS-DCTVVTIAH---RITSVLDSAMVLLLNHGLIKEY 1130
LDE A D A + + L + + T+V ++H I D A+ L HG I+
Sbjct: 171 LDEVLAVGDAAFQEKCLERLNELVEKNKTIVLVSHDLGAIKQYCDRAI--WLEHGQIRME 228
Query: 1131 DSP 1133
SP
Sbjct: 229 GSP 231
|
Length = 249 |
| >gnl|CDD|184588 PRK14243, PRK14243, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 46.7 bits (111), Expect = 3e-05
Identities = 46/167 (27%), Positives = 74/167 (44%), Gaps = 37/167 (22%)
Query: 376 LRNINLKVFHGMRVAVCGTVGSGKSSCLSC------ILGGVPKESGIIRLCGTKAY---- 425
++N+ L + A G G GKS+ L C ++ G E G + G Y
Sbjct: 26 VKNVWLDIPKNQITAFIGPSGCGKSTILRCFNRLNDLIPGFRVE-GKVTFHGKNLYAPDV 84
Query: 426 -----------VAQSPWIQSGKIEENILFGK-------EMDRERYERVLEACSLKKDLEV 467
V Q P I +NI +G +MD E ER L +L +++
Sbjct: 85 DPVEVRRRIGMVFQKPNPFPKSIYDNIAYGARINGYKGDMD-ELVERSLRQAALWDEVK- 142
Query: 468 LPFGDQTIIGERGINLSGGQKQRIQIARPLYQDADIFLLDDPFSPVD 514
D+ + + G++LSGGQ+QR+ IAR + ++ L+D+P S +D
Sbjct: 143 ----DK--LKQSGLSLSGGQQQRLCIARAIAVQPEVILMDEPCSALD 183
|
Length = 264 |
| >gnl|CDD|172756 PRK14268, PRK14268, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 46.5 bits (110), Expect = 3e-05
Identities = 46/186 (24%), Positives = 83/186 (44%), Gaps = 25/186 (13%)
Query: 950 IRHLQVRYAPNLPLVLRGRTGSGKSTLIQTLFRIVE-----STAGHILIDGKDISLIGLH 1004
++++ ++ N L G +G GKST I+ L R+ + G + I+G+DI +
Sbjct: 28 LKNVSMQIPKNSVTALIGPSGCGKSTFIRCLNRMNDLIKNCRIEGKVSIEGEDIYEPDVD 87
Query: 1005 --DLRTRLSIIPQDPTMFEGTTRSNL--DPLEEHADEQ-----IWEALDKCQLGDEV--R 1053
+LR + ++ Q P F + N+ P A+++ + AL L DE R
Sbjct: 88 VVELRKNVGMVFQKPNPFPMSIYDNVAYGPRIHGANKKDLDGVVENALRSAALWDETSDR 147
Query: 1054 KKKGKLDSQG---------RVLLKKSKVLVLDEATASVDTATDNQIQQTLRQHFSDCTVV 1104
K L G R L K K+++ DE T+++D + +I+ + D T+V
Sbjct: 148 LKSPALSLSGGQQQRLCIARTLAVKPKIILFDEPTSALDPISTARIEDLIMNLKKDYTIV 207
Query: 1105 TIAHRI 1110
+ H +
Sbjct: 208 IVTHNM 213
|
Length = 258 |
| >gnl|CDD|184593 PRK14258, PRK14258, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 46.6 bits (110), Expect = 3e-05
Identities = 45/176 (25%), Positives = 78/176 (44%), Gaps = 30/176 (17%)
Query: 967 GRTGSGKSTLIQTLFRIVE-----STAGHILIDGKDI--SLIGLHDLRTRLSIIPQDPTM 1019
G +G GKST ++ L R+ E G + ++I + L+ LR ++S++ P +
Sbjct: 40 GPSGCGKSTFLKCLNRMNELESEVRVEGRVEFFNQNIYERRVNLNRLRRQVSMVHPKPNL 99
Query: 1020 FEGTTRSNL---------DPLEEHADEQIWEALDKCQLGDEVRKK--KGKLDSQG----- 1063
F + N+ P E D+ + AL L DE++ K K LD G
Sbjct: 100 FPMSVYDNVAYGVKIVGWRPKLE-IDDIVESALKDADLWDEIKHKIHKSALDLSGGQQQR 158
Query: 1064 ----RVLLKKSKVLVLDEATASVDTATDNQIQQTLRQHF--SDCTVVTIAHRITSV 1113
R L K KVL++DE +D +++ ++ S+ T+V ++H + V
Sbjct: 159 LCIARALAVKPKVLLMDEPCFGLDPIASMKVESLIQSLRLRSELTMVIVSHNLHQV 214
|
Length = 261 |
| >gnl|CDD|184593 PRK14258, PRK14258, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 46.6 bits (110), Expect = 3e-05
Identities = 45/213 (21%), Positives = 89/213 (41%), Gaps = 37/213 (17%)
Query: 357 AIEIIDGSFSWDFSSPNPTLRNINLKVFHGMRVAVCGTVGSGKSSCLSCI-----LGGVP 411
AI++ + SF +D L ++++++ A+ G G GKS+ L C+ L
Sbjct: 7 AIKVNNLSFYYD---TQKILEGVSMEIYQSKVTAIIGPSGCGKSTFLKCLNRMNELESEV 63
Query: 412 KESGIIRLCGTKAY---------------VAQSPWIQSGKIEENILFGKEM----DRERY 452
+ G + Y V P + + +N+ +G ++ +
Sbjct: 64 RVEGRVEFFNQNIYERRVNLNRLRRQVSMVHPKPNLFPMSVYDNVAYGVKIVGWRPKLEI 123
Query: 453 ERVLEACSLKKDL--EVLPFGDQTIIGERGINLSGGQKQRIQIARPLYQDADIFLLDDPF 510
+ ++E+ DL E+ + I + ++LSGGQ+QR+ IAR L + L+D+P
Sbjct: 124 DDIVESALKDADLWDEI-----KHKIHKSALDLSGGQQQRLCIARALAVKPKVLLMDEPC 178
Query: 511 S---PVDDHTGAHLFKFCWVSSSKTVIYATHQV 540
P+ L + + S T++ +H +
Sbjct: 179 FGLDPIASMKVESLIQSLRLRSELTMVIVSHNL 211
|
Length = 261 |
| >gnl|CDD|237652 PRK14275, PRK14275, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 46.8 bits (111), Expect = 3e-05
Identities = 52/194 (26%), Positives = 84/194 (43%), Gaps = 34/194 (17%)
Query: 376 LRNINLKVFHGMRVAVCGTVGSGKSSCLSCI-----LGGVPKESGIIRLCGTKAY----- 425
++ +N + A+ G G GKS+ L I L +G + G Y
Sbjct: 55 VKKVNADILSKYVTAIIGPSGCGKSTFLRAINRMNDLIPSCHTTGALMFDGEDIYGKFTD 114
Query: 426 ----------VAQSPWIQSGKIEENILFGKEM----DRERYERVLEACSLKKDL---EVL 468
V Q P I +NI +G + D+++ E ++E SL+K EV
Sbjct: 115 EVLLRKKIGMVFQKPNPFPKSIFDNIAYGPRLHGINDKKQLEEIVEK-SLRKAALWDEVS 173
Query: 469 PFGDQTIIGERGINLSGGQKQRIQIARPLYQDADIFLLDDPFSPVDDHTGAHLFKFCW-V 527
D+ +G LSGGQ+QR+ +AR L + +I LLD+P S +D A + +
Sbjct: 174 DRLDKNALG-----LSGGQQQRLCVARTLAVEPEILLLDEPTSALDPKATAKIEDLIQEL 228
Query: 528 SSSKTVIYATHQVE 541
S T++ TH ++
Sbjct: 229 RGSYTIMIVTHNMQ 242
|
Length = 286 |
| >gnl|CDD|213193 cd03226, ABC_cobalt_CbiO_domain2, Second domain of the ATP-binding cassette component of cobalt transport system | Back alignment and domain information |
|---|
Score = 45.7 bits (109), Expect = 4e-05
Identities = 37/134 (27%), Positives = 61/134 (45%), Gaps = 17/134 (12%)
Query: 963 LVLRGRTGSGKSTLIQTLFRIVESTAGHILIDGKDISLIGLHDLRTRLSIIPQDPT--MF 1020
+ L G+ G+GK+TL + L +++ ++G IL++GK I + R + + QD +F
Sbjct: 29 IALTGKNGAGKTTLAKILAGLIKESSGSILLNGKPIK---AKERRKSIGYVMQDVDYQLF 85
Query: 1021 EGTTRSNLDP-LEEHAD--EQIWEALDKCQLGDEVRKKKGKLDSQG---RV-----LLKK 1069
+ R L L+E EQ L L + L S G R+ LL
Sbjct: 86 TDSVREELLLGLKELDAGNEQAETVLKDLDLYALKERHPLSL-SGGQKQRLAIAAALLSG 144
Query: 1070 SKVLVLDEATASVD 1083
+L+ DE T+ +D
Sbjct: 145 KDLLIFDEPTSGLD 158
|
Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems. Length = 205 |
| >gnl|CDD|184590 PRK14249, PRK14249, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 46.2 bits (109), Expect = 4e-05
Identities = 56/226 (24%), Positives = 92/226 (40%), Gaps = 42/226 (18%)
Query: 369 FSSPNPTLRNINLKVFHGMRVAVCGTVGSGKSSCLSC------ILGGVPKESGI------ 416
F + L+NIN+ A+ G G GKS+ L I+ G E +
Sbjct: 13 FYHKHQVLKNINMDFPERQITAIIGPSGCGKSTLLRALNRMNDIVSGARLEGAVLLDNEN 72
Query: 417 --------IRLCGTKAYVAQSPWIQSGKIEENILFGKEM----DRERYERVLEACSLKKD 464
+ L V Q P I +N+ FG M + R + V+E K
Sbjct: 73 IYSPNLDVVNLRKRVGMVFQQPNPFPKSIFDNVAFGPRMLGTTAQSRLDEVVE-----KS 127
Query: 465 LEVLPFGDQTI--IGERGINLSGGQKQRIQIARPLYQDADIFLLDDPFSPVDDHTGAHLF 522
L D+ + + G+ LSGGQ+QR+ IAR L + ++ L+D+P S +D + +
Sbjct: 128 LRQAALWDEVKDNLHKSGLALSGGQQQRLCIARVLAIEPEVILMDEPCSALDPVSTMRIE 187
Query: 523 KFCW-VSSSKTVIYATHQVE----------FLPAADLILVIKDGKI 557
+ + + T+ TH ++ FL DL+ + G+I
Sbjct: 188 ELMQELKQNYTIAIVTHNMQQAARASDWTGFLLTGDLVEYGRTGEI 233
|
Length = 251 |
| >gnl|CDD|132313 TIGR03269, met_CoM_red_A2, methyl coenzyme M reductase system, component A2 | Back alignment and domain information |
|---|
Score = 47.1 bits (112), Expect = 4e-05
Identities = 56/262 (21%), Positives = 103/262 (39%), Gaps = 61/262 (23%)
Query: 376 LRNINLKVFHGMRVAVCGTVGSGKSSCLSCILG--GVPKESGII----RLCGTKAYVA-- 427
L+NI+ + G + + G G+GKS + + G SG I LC YV
Sbjct: 16 LKNISFTIEEGEVLGILGRSGAGKSVLMHVLRGMDQYEPTSGRIIYHVALCEKCGYVERP 75
Query: 428 -----QSPWIQSGKIEENILFGKEMDRERY-----------------------ERVLEAC 459
P E + F D+ R + VLEA
Sbjct: 76 SKVGEPCPVCGGTLEPEEVDFWNLSDKLRRRIRKRIAIMLQRTFALYGDDTVLDNVLEAL 135
Query: 460 ---------SLKKDLEVLPFGDQTIIGER----GINLSGGQKQRIQIARPLYQDADIFLL 506
++ + ++++ + + R +LSGG+KQR+ +AR L ++ +FL
Sbjct: 136 EEIGYEGKEAVGRAVDLI---EMVQLSHRITHIARDLSGGEKQRVVLARQLAKEPFLFLA 192
Query: 507 DDPFSPVDDHTGAHLFKFCWVSSSK----TVIYATHQVEFLP-AADLILVIKDGKITQAG 561
D+P +D T A L + K +++ +H E + +D + +++G+I + G
Sbjct: 193 DEPTGTLDPQT-AKLVHNALEEAVKASGISMVLTSHWPEVIEDLSDKAIWLENGEIKEEG 251
Query: 562 KYSDILNSGTDFMELVGAHKQA 583
+++ FME V ++
Sbjct: 252 TPDEVVAV---FMEGVSEVEKE 270
|
The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2 [Energy metabolism, Methanogenesis]. Length = 520 |
| >gnl|CDD|172751 PRK14263, PRK14263, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 46.2 bits (109), Expect = 4e-05
Identities = 30/95 (31%), Positives = 53/95 (55%), Gaps = 13/95 (13%)
Query: 426 VAQSPWIQSGKIEENILFGKEMDR------ERYERVLEACSLKKDLEVLPFGDQTIIGER 479
V Q P S I +N+ FG ++R +R + L+ +L +++ D+ +
Sbjct: 94 VFQQPNPFSMSIFDNVAFGLRLNRYKGDLGDRVKHALQGAALWDEVK-----DK--LKVS 146
Query: 480 GINLSGGQKQRIQIARPLYQDADIFLLDDPFSPVD 514
G++LSGGQ+QR+ IAR + + ++ LLD+P S +D
Sbjct: 147 GLSLSGGQQQRLCIARAIATEPEVLLLDEPCSALD 181
|
Length = 261 |
| >gnl|CDD|237456 PRK13641, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 46.4 bits (110), Expect = 5e-05
Identities = 53/212 (25%), Positives = 92/212 (43%), Gaps = 41/212 (19%)
Query: 376 LRNINLKVFHGMRVAVCGTVGSGKSSCLSCILGGVPKESGIIRLCGTK------------ 423
L NI+ ++ G VA+ G GSGKS+ + + SG I + G
Sbjct: 23 LDNISFELEEGSFVALVGHTGSGKSTLMQHFNALLKPSSGTITIAGYHITPETGNKNLKK 82
Query: 424 -----AYVAQSPWIQ--SGKIEENILFG-------KEMDRERYERVLEACSLKKDL-EVL 468
+ V Q P Q + +++ FG ++ +E+ + L+ L +DL
Sbjct: 83 LRKKVSLVFQFPEAQLFENTVLKDVEFGPKNFGFSEDEAKEKALKWLKKVGLSEDLISKS 142
Query: 469 PFGDQTIIGERGINLSGGQKQRIQIARPLYQDADIFLLDDPFSPVDDHTGAHLFKFC--W 526
PF LSGGQ +R+ IA + + +I LD+P + +D + + +
Sbjct: 143 PF-----------ELSGGQMRRVAIAGVMAYEPEILCLDEPAAGLDPEGRKEMMQLFKDY 191
Query: 527 VSSSKTVIYATHQVEFLPA-ADLILVIKDGKI 557
+ TVI TH ++ + AD +LV++ GK+
Sbjct: 192 QKAGHTVILVTHNMDDVAEYADDVLVLEHGKL 223
|
Length = 287 |
| >gnl|CDD|237645 PRK14235, PRK14235, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 46.3 bits (110), Expect = 5e-05
Identities = 45/167 (26%), Positives = 71/167 (42%), Gaps = 34/167 (20%)
Query: 376 LRNINLKVFHGMRVAVCGTVGSGKSSCLSCI-----LGGVPKESGIIRLCGTKAY----- 425
L +++L + A G G GKS+ L C+ + +G I L G Y
Sbjct: 35 LFDVDLDIPEKTVTAFIGPSGCGKSTFLRCLNRMNDTIDGCRVTGKITLDGEDIYDPRLD 94
Query: 426 ----------VAQSPWIQSGKIEENILFGKEM-----DRERYERVLEACSLKKDL---EV 467
V Q P I EN+ +G + + + ++E SL+K EV
Sbjct: 95 VVELRARVGMVFQKPNPFPKSIYENVAYGPRIHGLARSKAELDEIVET-SLRKAGLWEEV 153
Query: 468 LPFGDQTIIGERGINLSGGQKQRIQIARPLYQDADIFLLDDPFSPVD 514
+ + E G LSGGQ+QR+ IAR + ++ L+D+P S +D
Sbjct: 154 -----KDRLHEPGTGLSGGQQQRLCIARAIAVSPEVILMDEPCSALD 195
|
Length = 267 |
| >gnl|CDD|182569 PRK10584, PRK10584, putative ABC transporter ATP-binding protein YbbA; Provisional | Back alignment and domain information |
|---|
Score = 45.5 bits (108), Expect = 5e-05
Identities = 56/210 (26%), Positives = 83/210 (39%), Gaps = 39/210 (18%)
Query: 376 LRNINLKVFHGMRVAVCGTVGSGKSSCLSCILGGVPKESGIIRLCGTK------------ 423
L + L V G +A+ G GSGKS+ L+ + G SG + L G
Sbjct: 26 LTGVELVVKRGETIALIGESGSGKSTLLAILAGLDDGSSGEVSLVGQPLHQMDEEARAKL 85
Query: 424 -----AYVAQS-PWIQSGKIEENI----LFGKEMDRERYER---VLEACSLKKDLEVLPF 470
+V QS I + EN+ L E R+ +LE L K L+ LP
Sbjct: 86 RAKHVGFVFQSFMLIPTLNALENVELPALLRGESSRQSRNGAKALLEQLGLGKRLDHLP- 144
Query: 471 GDQTIIGERGINLSGGQKQRIQIARPLYQDADIFLLDDPFSPVDDHTG---AHLFKFCWV 527
LSGG++QR+ +AR D+ D+P +D TG A L
Sbjct: 145 ----------AQLSGGEQQRVALARAFNGRPDVLFADEPTGNLDRQTGDKIADLLFSLNR 194
Query: 528 SSSKTVIYATHQVEFLPAADLILVIKDGKI 557
T+I TH ++ D L + +G++
Sbjct: 195 EHGTTLILVTHDLQLAARCDRRLRLVNGQL 224
|
Length = 228 |
| >gnl|CDD|131817 TIGR02770, nickel_nikD, nickel import ATP-binding protein NikD | Back alignment and domain information |
|---|
Score = 45.4 bits (108), Expect = 5e-05
Identities = 60/215 (27%), Positives = 92/215 (42%), Gaps = 37/215 (17%)
Query: 963 LVLRGRTGSGKST----LIQTLFRIVESTAGHILIDGKDI---SLIGLHDLRTRLSIIPQ 1015
L L G +GSGKS ++ L + T+G IL+DG+ + S+ G H ++ I Q
Sbjct: 15 LALVGESGSGKSLTCLAILGLLPPGLTQTSGEILLDGRPLLPLSIRGRH-----IATIMQ 69
Query: 1016 DP--------TM---FEGTTRSNLDPLEEHADEQIWEALDKCQL--GDEVRKKKGKLDSQ 1062
+P TM T RS L L + A I EAL+ L +EV KK S
Sbjct: 70 NPRTAFNPLFTMGNHAIETLRS-LGKLSKQARALILEALEAVGLPDPEEVLKKYPFQLSG 128
Query: 1063 G---RV-----LLKKSKVLVLDEATASVDTATDNQIQQTLR--QHFSDCTVVTIAHRITS 1112
G RV LL + L+ DE T +D ++ + LR + ++ I H +
Sbjct: 129 GMLQRVMIALALLLEPPFLIADEPTTDLDVVNQARVLKLLRELRQLFGTGILLITHDLGV 188
Query: 1113 VLDSA-MVLLLNHGLIKEYDSPTKLLENKSSSFAQ 1146
V A V +++ G I E + ++ N +
Sbjct: 189 VARIADEVAVMDDGRIVERGTVKEIFYNPKHETTR 223
|
This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous [Transport and binding proteins, Cations and iron carrying compounds]. Length = 230 |
| >gnl|CDD|226952 COG4586, COG4586, ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 46.2 bits (110), Expect = 5e-05
Identities = 55/263 (20%), Positives = 104/263 (39%), Gaps = 40/263 (15%)
Query: 374 PTLRNINLKVFHGMRVAVCGTVGSGKSSCLSCILGGVPKESGIIRLCG------TKAYVA 427
+++I+ ++ G V G G+GKS+ L + G + SG +R+ G + Y+
Sbjct: 38 EAVQDISFEIPKGEIVGFLGANGAGKSTTLKMLTGLLLPTSGKVRVNGKDPFRRREEYLR 97
Query: 428 QSPWIQSGK--------IEENILFGKEMD-------RERYERVLEACSLKKDLEVLPFGD 472
+ K +++ K + ER + + E L+ L+
Sbjct: 98 SIGLVMGQKLQLWWDLPALDSLEVLKLIYEIPDDEFAERLDFLTEILDLEGFLKW----- 152
Query: 473 QTIIGERGINLSGGQKQRIQIARPLYQDADIFLLDDPFSPVDDHTGAHLFKFC-WVSSSK 531
LS GQ+ R ++A L + LD+P +D + A++ +F + +
Sbjct: 153 ------PVRKLSLGQRMRAELAAALLHPPKVLFLDEPTVGLDVNAQANIREFLKEYNEER 206
Query: 532 --TVIYATH---QVEFLPAADLILVIKDGKITQAGKYSDILNSGTDFMELVGAHKQALSG 586
TV+ TH + L D +L+I G++ G + + + E KQA S
Sbjct: 207 QATVLLTTHIFDDIATLC--DRVLLIDQGQLVFDGTLAQLQEQFGPYKEFSVELKQAKSL 264
Query: 587 LDSIDRGPVSERKSINKENDGTS 609
G V+ + +N +ND +
Sbjct: 265 SQLALLGDVTIEEGLNIKNDVSR 287
|
Length = 325 |
| >gnl|CDD|234152 TIGR03265, PhnT2, putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 46.2 bits (110), Expect = 6e-05
Identities = 54/212 (25%), Positives = 93/212 (43%), Gaps = 41/212 (19%)
Query: 967 GRTGSGKSTLIQTLFRIVESTAGHILIDGKDISLIGLHDLRTRLS-------IIPQDPTM 1019
G +G GK+TL++ + + TAG I G+DI TRL I+ Q +
Sbjct: 37 GPSGCGKTTLLRIIAGLERQTAGTIYQGGRDI---------TRLPPQKRDYGIVFQSYAL 87
Query: 1020 FEGTT--------RSNLDPLEEHADEQIWEALDKCQLGDEVRKKKGKLD--SQGRVLLKK 1069
F T N E++ E LD L RK G+L Q RV L +
Sbjct: 88 FPNLTVADNIAYGLKNRGMGRAEVAERVAELLDLVGLPGSERKYPGQLSGGQQQRVALAR 147
Query: 1070 S-----KVLVLDEATASVDTATDNQIQQTLRQHFSDCTVVTIAHRITSVLDSAMVL---- 1120
+ +L+LDE +++D ++ +RQ V TI +T + A+ +
Sbjct: 148 ALATSPGLLLLDEPLSALDARVREHLRTEIRQLQRRLGVTTIM--VTHDQEEALSMADRI 205
Query: 1121 -LLNHGLIKEYDSPTKLLENKSSSFAQLVAEY 1151
++NHG+I++ +P ++ + ++ F VA++
Sbjct: 206 VVMNHGVIEQVGTPQEIYRHPATPF---VADF 234
|
This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely [Transport and binding proteins, Amino acids, peptides and amines]. Length = 353 |
| >gnl|CDD|182692 PRK10744, pstB, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 45.8 bits (109), Expect = 6e-05
Identities = 52/195 (26%), Positives = 81/195 (41%), Gaps = 40/195 (20%)
Query: 349 MPRGNSDTAIEIIDGSFSWDFSSPNPTLRNINLKVFHGMRVAVCGTVGSGKSSCL----- 403
+ + I++ + +F + L+NINL + A G G GKS+ L
Sbjct: 5 SMVATAPSKIQVRNLNF---YYGKFHALKNINLDIAKNQVTAFIGPSGCGKSTLLRTFNR 61
Query: 404 ------------SCILGG---VPKESGIIRLCGTKAYVAQSPWIQSGKIEENILFG---- 444
+L G + + I L V Q P I +NI FG
Sbjct: 62 MYELYPEQRAEGEILLDGENILTPKQDIALLRAKVGMVFQKPTPFPMSIYDNIAFGVRLF 121
Query: 445 -----KEMDRERYERVLEACSLKKDLEVLPFGDQTIIGERGINLSGGQKQRIQIARPLYQ 499
EMD ER E L +L +++ D+ + + G +LSGGQ+QR+ IAR +
Sbjct: 122 EKLSRAEMD-ERVEWALTKAALWNEVK-----DK--LHQSGYSLSGGQQQRLCIARGIAI 173
Query: 500 DADIFLLDDPFSPVD 514
++ LLD+P S +D
Sbjct: 174 RPEVLLLDEPCSALD 188
|
Length = 260 |
| >gnl|CDD|172761 PRK14273, PRK14273, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 45.8 bits (108), Expect = 6e-05
Identities = 51/222 (22%), Positives = 102/222 (45%), Gaps = 29/222 (13%)
Query: 950 IRHLQVRYAPNLPLVLRGRTGSGKSTLIQTLFR---IVESTA--GHILIDGKDI--SLIG 1002
+ ++ ++ N L G +G GKST ++TL R +VE G+++ +GK+I +
Sbjct: 23 LNNINIKILKNSITALIGPSGCGKSTFLRTLNRMNDLVEGIKIEGNVIYEGKNIYSNNFD 82
Query: 1003 LHDLRTRLSIIPQDPTMFEGTTRSNLD--------PLEEHADEQIWEALDKCQLGDEVRK 1054
+ +LR ++ ++ Q P F + N+ ++ DE + ++L K L +EV+
Sbjct: 83 ILELRRKIGMVFQTPNPFLMSIYDNISYGPKIHGTKDKKKLDEIVEQSLKKSALWNEVKD 142
Query: 1055 K--KGKLDSQG---------RVLLKKSKVLVLDEATASVDTATDNQIQQTLRQHFSDCTV 1103
K L G R L + V+++DE T+++D + +I++ + T+
Sbjct: 143 KLNTNALSLSGGQQQRLCIARTLAIEPNVILMDEPTSALDPISTGKIEELIINLKESYTI 202
Query: 1104 VTIAHRITSV--LDSAMVLLLNHGLIKEYDSPTKLLENKSSS 1143
+ + H + + LN G I+E S +L N ++
Sbjct: 203 IIVTHNMQQAGRISDRTAFFLN-GCIEEESSTDELFFNPKNT 243
|
Length = 254 |
| >gnl|CDD|237453 PRK13633, PRK13633, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 45.8 bits (109), Expect = 6e-05
Identities = 59/222 (26%), Positives = 91/222 (40%), Gaps = 53/222 (23%)
Query: 374 PTLRNINLKVFHGMRVAVCGTVGSGKSSC---LSCILGGVPKESGI-------------- 416
L ++NL+V G + + G GSGKS+ ++ +L +P E +
Sbjct: 24 LALDDVNLEVKKGEFLVILGRNGSGKSTIAKHMNALL--IPSEGKVYVDGLDTSDEENLW 81
Query: 417 -IRLCGTKAYVAQSP--WIQSGKIEENILFGKE-------MDRERYERVLEACSLKKDLE 466
IR V Q+P I + +EE++ FG E RER + L+ + +
Sbjct: 82 DIR--NKAGMVFQNPDNQIVATIVEEDVAFGPENLGIPPEEIRERVDESLKKVGMYEYRR 139
Query: 467 VLPFGDQTIIGERGINLSGGQKQRIQIARPLYQDADIFLLDDPFSPVDD-------HTGA 519
P LSGGQKQR+ IA L + + D+P + +D +T
Sbjct: 140 HAPH-----------LLSGGQKQRVAIAGILAMRPECIIFDEPTAMLDPSGRREVVNTIK 188
Query: 520 HLFKFCWVSSSKTVIYATHQVEFLPAADLILVIKDGKITQAG 561
L K T+I TH +E AD I+V+ GK+ G
Sbjct: 189 ELNK----KYGITIILITHYMEEAVEADRIIVMDSGKVVMEG 226
|
Length = 280 |
| >gnl|CDD|131816 TIGR02769, nickel_nikE, nickel import ATP-binding protein NikE | Back alignment and domain information |
|---|
Score = 45.6 bits (108), Expect = 6e-05
Identities = 45/222 (20%), Positives = 83/222 (37%), Gaps = 25/222 (11%)
Query: 374 PTLRNINLKVFHGMRVAVCGTVGSGKSSCLSCILGGVPKESGIIRLCGTKAYVAQSPWIQ 433
P L N++L + G V + G G GKS+ +LG G + G Y +
Sbjct: 25 PVLTNVSLSIEEGETVGLLGRSGCGKSTLARLLLGLEKPAQGTVSFRGQDLYQLDRKQRR 84
Query: 434 SGKIEENILF-----------------GKEMDRERYERVLEACSLKKDLEVLPFGD--QT 474
+ + + ++F G+ + + E+ + E+L
Sbjct: 85 AFRRDVQLVFQDSPSAVNPRMTVRQIIGEPL--RHLTSLDESEQKARIAELLDMVGLRSE 142
Query: 475 IIGERGINLSGGQKQRIQIARPLYQDADIFLLDDPFSPVDDHTGA---HLFKFCWVSSSK 531
+ LSGGQ QRI IAR L + +LD+ S +D A L + +
Sbjct: 143 DADKLPRQLSGGQLQRINIARALAVKPKLIVLDEAVSNLDMVLQAVILELLRKLQQAFGT 202
Query: 532 TVIYATHQVEFLPA-ADLILVIKDGKITQAGKYSDILNSGTD 572
++ TH + + + + V+ G+I + + +L+
Sbjct: 203 AYLFITHDLRLVQSFCQRVAVMDKGQIVEECDVAQLLSFKHP 244
|
This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase [Transport and binding proteins, Cations and iron carrying compounds]. Length = 265 |
| >gnl|CDD|227019 COG4674, COG4674, Uncharacterized ABC-type transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 45.8 bits (109), Expect = 6e-05
Identities = 46/173 (26%), Positives = 74/173 (42%), Gaps = 31/173 (17%)
Query: 964 VLRGRTGSGKSTLIQTLFRIVESTAGHILIDG-KDISLIGLHDLRTRLSIIP--QDPTMF 1020
VL G G+GK+TL+ + G +L DG D++ + H R I Q PT+F
Sbjct: 35 VLIGPNGAGKTTLMDVITGKTRPQEGEVLFDGDTDLTKLPEHR-IARAGIGRKFQKPTVF 93
Query: 1021 EG-TTRSNLDPLEEHADEQIW----------------EALDKCQLGDEVRKKKGKLDSQG 1063
E T R NL+ L + D+ ++ E L LGDE + L S G
Sbjct: 94 ENLTVRENLE-LALNRDKSVFASLFARLRAEERRRIDELLATIGLGDERDRLAALL-SHG 151
Query: 1064 R--------VLLKKSKVLVLDEATASVDTATDNQIQQTLRQHFSDCTVVTIAH 1108
+ +L + K+L+LDE A + A + + L+ +++ + H
Sbjct: 152 QKQWLEIGMLLAQDPKLLLLDEPVAGMTDAETEKTAELLKSLAGKHSILVVEH 204
|
Length = 249 |
| >gnl|CDD|226622 COG4138, BtuD, ABC-type cobalamin transport system, ATPase component [Coenzyme metabolism] | Back alignment and domain information |
|---|
Score = 45.6 bits (108), Expect = 6e-05
Identities = 48/218 (22%), Positives = 90/218 (41%), Gaps = 38/218 (17%)
Query: 376 LRNINLKVFHGMRVAVCGTVGSGKSSCLSCILGGVPKESGIIRLCGT------------- 422
L ++ +V G + + G G+GKS+ L+ + G SG I+ G
Sbjct: 15 LGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMTSG-SGSIQFAGQPLEAWSATELARH 73
Query: 423 KAYVAQSPWIQSGKIEENILFGKEMDRERYERVLEACSLKKDLEVLPFGDQTIIGERGIN 482
+AY++Q + L + D+ R E + + L D+ R N
Sbjct: 74 RAYLSQQQTPPFAMPVWHYLTLHQPDKTRTELLNDVAGA------LALDDKL---GRSTN 124
Query: 483 -LSGGQKQRIQIARPLYQ-------DADIFLLDDPFSPVDDHTGAHLFK----FCWVSSS 530
LSGG+ QR+++A + Q + LLD+P + +D + L + C
Sbjct: 125 QLSGGEWQRVRLAAVVLQITPDANPAGQLLLLDEPMNSLDVAQQSALDRLLSALC--QQG 182
Query: 531 KTVIYATHQVEF-LPAADLILVIKDGKITQAGKYSDIL 567
++ ++H + L A ++K GK+ +G+ ++L
Sbjct: 183 LAIVMSSHDLNHTLRHAHRAWLLKRGKLLASGRREEVL 220
|
Length = 248 |
| >gnl|CDD|213187 cd03220, ABC_KpsT_Wzt, ATP-binding cassette component of polysaccharide transport system | Back alignment and domain information |
|---|
Score = 45.2 bits (108), Expect = 7e-05
Identities = 51/188 (27%), Positives = 78/188 (41%), Gaps = 41/188 (21%)
Query: 967 GRTGSGKSTLIQTLFRIVESTAGHILIDGKDISLIGLHDLRTRLSIIPQDPTMFEG--TT 1024
GR G+GKSTL++ L I +G + + G+ SL+GL F T
Sbjct: 55 GRNGAGKSTLLRLLAGIYPPDSGTVTVRGRVSSLLGLG-------------GGFNPELTG 101
Query: 1025 RSN---------LDPLEEHADEQIWEALDKCQLGDEVRKKKGKLDSQG---R-----VLL 1067
R N L E DE+I E ++ +LGD + S G R
Sbjct: 102 RENIYLNGRLLGLSRKE--IDEKIDEIIEFSELGDFIDLPVKTY-SSGMKARLAFAIATA 158
Query: 1068 KKSKVLVLDEATASVDTATDNQIQQTLRQHFSDC-TVVTIAHRITSVL---DSAMVLLLN 1123
+ +L++DE A D A + Q+ LR+ TV+ ++H +S+ D A+VL
Sbjct: 159 LEPDILLIDEVLAVGDAAFQEKCQRRLRELLKQGKTVILVSHDPSSIKRLCDRALVLE-- 216
Query: 1124 HGLIKEYD 1131
G I+
Sbjct: 217 KGKIRFDG 224
|
The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export. Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenza) and a cytoplasmic membrane protein MPA2. Length = 224 |
| >gnl|CDD|236688 PRK10418, nikD, nickel transporter ATP-binding protein NikD; Provisional | Back alignment and domain information |
|---|
Score = 45.5 bits (108), Expect = 7e-05
Identities = 66/256 (25%), Positives = 101/256 (39%), Gaps = 54/256 (21%)
Query: 370 SSPNPTLRNINLKVFHGMRVAVCGTVGSGKSSCLSC--ILG----GVPKESGIIRLCG-- 421
+ P + ++L + G +A+ G GSGKS L+C LG GV + +G + L G
Sbjct: 13 QAAQPLVHGVSLTLQRGRVLALVGGSGSGKS--LTCAAALGILPAGVRQTAGRVLLDGKP 70
Query: 422 ---------TKAYVAQSP--------WIQSGKIEENILFGKEMDRERYERVLEACSLKKD 464
A + Q+P + + E + GK D LEA L+
Sbjct: 71 VAPCALRGRKIATIMQNPRSAFNPLHTMHTHARETCLALGKPADDATLTAALEAVGLENA 130
Query: 465 LEVL---PFGDQTIIGERGINLSGGQKQRIQIARPLYQDADIFLLDDPFSPVDDHTGAH- 520
VL PF +SGG QR+ IA L +A + D+P + +D A
Sbjct: 131 ARVLKLYPF-----------EMSGGMLQRMMIALALLCEAPFIIADEPTTDLDVVAQARI 179
Query: 521 --LFKFCWVSSSKTVIYATHQ---VEFLPAADLILVIKDGKITQAGKYSDILN---SGTD 572
L + + ++ TH V L AD + V+ G+I + G + N
Sbjct: 180 LDLLESIVQKRALGMLLVTHDMGVVARL--ADDVAVMSHGRIVEQGDVETLFNAPKHAVT 237
Query: 573 FMELVGAHKQALSGLD 588
LV AH AL G++
Sbjct: 238 RS-LVSAH-LALYGME 251
|
Length = 254 |
| >gnl|CDD|184125 PRK13538, PRK13538, cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Score = 44.8 bits (107), Expect = 7e-05
Identities = 43/189 (22%), Positives = 67/189 (35%), Gaps = 44/189 (23%)
Query: 377 RNINLKVFHGMRVAVCGTVGSGKSSCLSCILGGVPKESGIIRLCGTK------AYVAQSP 430
++ + G V + G G+GK+S L + G ++G + G Y
Sbjct: 18 SGLSFTLNAGELVQIEGPNGAGKTSLLRILAGLARPDAGEVLWQGEPIRRQRDEYHQDLL 77
Query: 431 WI--QSGKI------EENILF----GKEMDRERYERVLEACSLKKDLEVLPFGDQTIIGE 478
++ Q G I EN+ F D E L L E +P
Sbjct: 78 YLGHQPG-IKTELTALENLRFYQRLHGPGDDEALWEALAQVGLAG-FEDVPVR------- 128
Query: 479 RGINLSGGQKQRIQIARPLYQDADIFLLDDPFSPVDD--------HTGAHLFKFCWVSSS 530
LS GQ++R+ +AR A +++LD+PF+ +D H
Sbjct: 129 ---QLSAGQQRRVALARLWLTRAPLWILDEPFTAIDKQGVARLEALLAQHA------EQG 179
Query: 531 KTVIYATHQ 539
VI THQ
Sbjct: 180 GMVILTTHQ 188
|
Length = 204 |
| >gnl|CDD|172744 PRK14256, PRK14256, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 45.4 bits (107), Expect = 7e-05
Identities = 41/188 (21%), Positives = 86/188 (45%), Gaps = 27/188 (14%)
Query: 950 IRHLQVRYAPNLPLVLRGRTGSGKSTLIQTLFRIVE-----STAGHILIDGKDISLIGLH 1004
++ + + + N + G +G GKST+++++ R+ + G IL+D DI G+
Sbjct: 20 VKDVSMDFPENSVTAIIGPSGCGKSTVLRSINRMHDLVPSARVTGKILLDDTDIYDRGVD 79
Query: 1005 --DLRTRLSIIPQDPTMFEGTT---------RSNLDPLEEHADEQIWEALDKCQLGDEV- 1052
+R R+ ++ Q P F + + N ADE + +L + L DEV
Sbjct: 80 PVSIRRRVGMVFQKPNPFPAMSIYDNVIAGYKLNGRVNRSEADEIVESSLKRVALWDEVK 139
Query: 1053 -RKKKGKLDSQG---------RVLLKKSKVLVLDEATASVDTATDNQIQQTLRQHFSDCT 1102
R K ++ G R + K +V+++DE +++D + +I++ + + T
Sbjct: 140 DRLKSNAMELSGGQQQRLCIARTIAVKPEVILMDEPASALDPISTLKIEELIEELKEKYT 199
Query: 1103 VVTIAHRI 1110
++ + H +
Sbjct: 200 IIIVTHNM 207
|
Length = 252 |
| >gnl|CDD|172733 PRK14245, PRK14245, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 45.4 bits (107), Expect = 8e-05
Identities = 55/218 (25%), Positives = 88/218 (40%), Gaps = 51/218 (23%)
Query: 376 LRNINLKVFHGMRVAVCGTVGSGKSSCLSCI-----LGGVPKESGIIRLCGTKAY----- 425
L+ I++++ VA G G GKS+ L L + G IR+ G Y
Sbjct: 19 LKGISMEIEEKSVVAFIGPSGCGKSTFLRLFNRMNDLIPATRLEGEIRIDGRNIYDKGVQ 78
Query: 426 ----------VAQSPWIQSGKIEENILFG--------KEMDRERYERVLEACSLKKDLEV 467
V Q P I EN+ +G R+R E L+ +L ++
Sbjct: 79 VDELRKNVGMVFQRPNPFPKSIFENVAYGLRVNGVKDNAFIRQRVEETLKGAALWDEV-- 136
Query: 468 LPFGDQTIIGERGINLSGGQKQRIQIARPLYQDADIFLLDDPFSPVDDHTGAHLFKFCWV 527
+ + E LSGGQ+QR+ IAR + + L+D+P S +D +
Sbjct: 137 -----KDKLKESAFALSGGQQQRLCIARAMAVSPSVLLMDEPASALDP-----------I 180
Query: 528 SSSKTVIYATHQVEFLPAADLILVIKDGKITQAGKYSD 565
S++K V H+++ D +VI + QA + SD
Sbjct: 181 STAK-VEELIHELK----KDYTIVIVTHNMQQAARVSD 213
|
Length = 250 |
| >gnl|CDD|237646 PRK14237, PRK14237, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 45.5 bits (108), Expect = 9e-05
Identities = 34/102 (33%), Positives = 46/102 (45%), Gaps = 25/102 (24%)
Query: 426 VAQSPWIQSGKIEENILFG---------KEMDRERYERVLEACSL----KKDLEVLPFGD 472
V Q P + I ENI F K +D E E L+ +L K DL
Sbjct: 106 VFQRPNPFAKSIYENITFALERAGVKDKKVLD-EIVETSLKQAALWDQVKDDL------- 157
Query: 473 QTIIGERGINLSGGQKQRIQIARPLYQDADIFLLDDPFSPVD 514
+ + LSGGQ+QR+ IAR + DI L+D+P S +D
Sbjct: 158 ----HKSALTLSGGQQQRLCIARAIAVKPDILLMDEPASALD 195
|
Length = 267 |
| >gnl|CDD|236947 PRK11650, ugpC, glycerol-3-phosphate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 46.0 bits (110), Expect = 9e-05
Identities = 39/120 (32%), Positives = 58/120 (48%), Gaps = 20/120 (16%)
Query: 450 ERYERVLEACSLKKDLEVLPFGDQTIIGERGINLSGGQKQRIQIARPLYQDADIFLLDDP 509
E ERV EA + LE+ P D+ + LSGGQ+QR+ + R + ++ +FL D+P
Sbjct: 110 EIEERVAEAA---RILELEPLLDR-----KPRELSGGQRQRVAMGRAIVREPAVFLFDEP 161
Query: 510 FSPVDDHTGAHL-------FKFCWVSSSKTVIYATH-QVEFLPAADLILVIKDGKITQAG 561
S +D A L + T +Y TH QVE + AD ++V+ G Q G
Sbjct: 162 LSNLD----AKLRVQMRLEIQRLHRRLKTTSLYVTHDQVEAMTLADRVVVMNGGVAEQIG 217
|
Length = 356 |
| >gnl|CDD|240339 PTZ00265, PTZ00265, multidrug resistance protein (mdr1); Provisional | Back alignment and domain information |
|---|
Score = 46.2 bits (109), Expect = 1e-04
Identities = 47/205 (22%), Positives = 82/205 (40%), Gaps = 40/205 (19%)
Query: 468 LPFGDQTIIGERGINLSGGQKQRIQIARPLYQDADIFLLDDPFSPVDDHTGAHLFKFC-- 525
LP +T++G LSGGQKQRI IAR + ++ I +LD+ S +D+ + + K
Sbjct: 565 LPDKYETLVGSNASKLSGGQKQRISIARAIIRNPKILILDEATSSLDNKSEYLVQKTINN 624
Query: 526 -WVSSSKTVIYATHQVEFLPAADLILVI---------------------------KDGKI 557
+ ++ I H++ + A+ I V+ K+ K
Sbjct: 625 LKGNENRITIIIAHRLSTIRYANTIFVLSNRERGSTVDVDIIGEDPTKDNKENNNKNNKD 684
Query: 558 TQAGKYSD----ILNSGTDFMELVGAHKQALSGLDS-----IDRGPVSERKSINKENDGT 608
++ I N+G+ +E G H + + I+ VS +KS N +ND
Sbjct: 685 DNNNNNNNNNNKINNAGSYIIEQ-GTHDALMKNKNGIYYTMINNQKVSSKKSSNNDNDKD 743
Query: 609 STTNEIVNKEENKNFQSDDEAALPK 633
S K+ + + D+ K
Sbjct: 744 SDMKSSAYKDSERGYDPDEMNGNSK 768
|
Length = 1466 |
| >gnl|CDD|172200 PRK13652, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 45.2 bits (107), Expect = 1e-04
Identities = 40/134 (29%), Positives = 65/134 (48%), Gaps = 18/134 (13%)
Query: 967 GRTGSGKSTLIQTLFRIVESTAGHILIDGKDISLIGLHDLRTRLSIIPQDP--TMFEGTT 1024
G G+GKSTL + I++ T+G +LI G+ I+ + ++R + ++ Q+P +F T
Sbjct: 37 GPNGAGKSTLFRHFNGILKPTSGSVLIRGEPITKENIREVRKFVGLVFQNPDDQIFSPTV 96
Query: 1025 RS-------NLDPLEEHADEQIWEALDKCQLGDEVRKKKGKLDSQGR--------VLLKK 1069
NL EE ++ AL L +E+R + S G V+ +
Sbjct: 97 EQDIAFGPINLGLDEETVAHRVSSALHMLGL-EELRDRVPHHLSGGEKKRVAIAGVIAME 155
Query: 1070 SKVLVLDEATASVD 1083
+VLVLDE TA +D
Sbjct: 156 PQVLVLDEPTAGLD 169
|
Length = 277 |
| >gnl|CDD|184205 PRK13646, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 45.2 bits (107), Expect = 1e-04
Identities = 52/204 (25%), Positives = 96/204 (47%), Gaps = 34/204 (16%)
Query: 967 GRTGSGKSTLIQTLFRIVESTAGHILIDGKDISLIG----LHDLRTRLSIIPQDP--TMF 1020
G+TGSGKSTLIQ + +++ T G + +D I+ + +R R+ ++ Q P +F
Sbjct: 40 GQTGSGKSTLIQNINALLKPTTGTVTVDDITITHKTKDKYIRPVRKRIGMVFQFPESQLF 99
Query: 1021 EGTTRS-----------NLDPLEEHADEQIWE--------ALDKCQL-GDEVRKKKGKLD 1060
E T NLD ++ +A + + + Q+ G ++RK
Sbjct: 100 EDTVEREIIFGPKNFKMNLDEVKNYAHRLLMDLGFSRDVMSQSPFQMSGGQMRKI----- 154
Query: 1061 SQGRVLLKKSKVLVLDEATASVDTATDNQIQQTLR--QHFSDCTVVTIAHRITSVLDSA- 1117
+ +L ++VLDE TA +D + Q+ + L+ Q + T++ ++H + V A
Sbjct: 155 AIVSILAMNPDIIVLDEPTAGLDPQSKRQVMRLLKSLQTDENKTIILVSHDMNEVARYAD 214
Query: 1118 MVLLLNHGLIKEYDSPTKLLENKS 1141
V+++ G I SP +L ++K
Sbjct: 215 EVIVMKEGSIVSQTSPKELFKDKK 238
|
Length = 286 |
| >gnl|CDD|130324 TIGR01257, rim_protein, retinal-specific rim ABC transporter | Back alignment and domain information |
|---|
Score = 46.5 bits (110), Expect = 1e-04
Identities = 44/180 (24%), Positives = 75/180 (41%), Gaps = 16/180 (8%)
Query: 946 GEVNIRHLQVRYAPNLPLVLRGRTGSGKSTLIQTLFRIVESTAGHILIDGKDISLIGLHD 1005
G + L + + N G G+GK+T + L ++ T+G +L+ GKDI L
Sbjct: 942 GRPAVDRLNITFYENQITAFLGHNGAGKTTTLSILTGLLPPTSGTVLVGGKDIE-TNLDA 1000
Query: 1006 LRTRLSIIPQDPTMFEGTTRSNLDPLEEHADEQIWEA--------LDKCQL----GDEVR 1053
+R L + PQ +F T + + WE L+ L +E +
Sbjct: 1001 VRQSLGMCPQHNILFHHLTVAEHILFYAQLKGRSWEEAQLEMEAMLEDTGLHHKRNEEAQ 1060
Query: 1054 KKKGKLDSQGRV---LLKKSKVLVLDEATASVDTATDNQIQQTLRQHFSDCTVVTIAHRI 1110
G + + V + +KV+VLDE T+ VD + I L ++ S T++ H +
Sbjct: 1061 DLSGGMQRKLSVAIAFVGDAKVVVLDEPTSGVDPYSRRSIWDLLLKYRSGRTIIMSTHHM 1120
|
This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease [Transport and binding proteins, Other]. Length = 2272 |
| >gnl|CDD|172748 PRK14260, PRK14260, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 44.6 bits (105), Expect = 1e-04
Identities = 48/187 (25%), Positives = 83/187 (44%), Gaps = 40/187 (21%)
Query: 357 AIEIIDGSFSWDFSSPNPTLRNINLKVFHGMRVAVCGTVGSGKSSCLSCI-----LGGVP 411
AI++ D SF ++ S + I++ ++ A+ G G GKS+ + + L G
Sbjct: 7 AIKVKDLSFYYNTSK---AIEGISMDIYRNKVTAIIGPSGCGKSTFIKTLNRISELEGPV 63
Query: 412 KESGIIRLCGTKAY---------------VAQSPWIQSGKIEENILFG---------KEM 447
K G++ G Y V Q P I EN+ +G ++
Sbjct: 64 KVEGVVDFFGQNIYDPRININRLRRQIGMVFQRPNPFPMSIYENVAYGVRISAKLPQADL 123
Query: 448 DRERYERVLEACSLKKDLEVLPFGDQTIIGERGINLSGGQKQRIQIARPLYQDADIFLLD 507
D E E L+ +L ++++ D+ + + + LSGGQ+QR+ IAR L + L+D
Sbjct: 124 D-EIVESALKGAALWQEVK-----DK--LNKSALGLSGGQQQRLCIARALAIKPKVLLMD 175
Query: 508 DPFSPVD 514
+P S +D
Sbjct: 176 EPCSALD 182
|
Length = 259 |
| >gnl|CDD|131817 TIGR02770, nickel_nikD, nickel import ATP-binding protein NikD | Back alignment and domain information |
|---|
Score = 44.3 bits (105), Expect = 1e-04
Identities = 65/238 (27%), Positives = 96/238 (40%), Gaps = 47/238 (19%)
Query: 378 NINLKVFHGMRVAVCGTVGSGKS-SCLSCILGGVPKE----SGIIRLCGTK--------- 423
++NL + G +A+ G GSGKS +CL+ ILG +P SG I L G
Sbjct: 4 DLNLSLKRGEVLALVGESGSGKSLTCLA-ILGLLPPGLTQTSGEILLDGRPLLPLSIRGR 62
Query: 424 --AYVAQSPW--------IQSGKIEENILFGKEMD--RERYERVLEACSLKKDLEVL--- 468
A + Q+P + + IE GK R LEA L EVL
Sbjct: 63 HIATIMQNPRTAFNPLFTMGNHAIETLRSLGKLSKQARALILEALEAVGLPDPEEVLKKY 122
Query: 469 PFGDQTIIGERGINLSGGQKQRIQIARPLYQDADIFLLDDPFSPVDDHTGAHLFKFCWVS 528
PF LSGG QR+ IA L + + D+P + +D A + K
Sbjct: 123 PF-----------QLSGGMLQRVMIALALLLEPPFLIADEPTTDLDVVNQARVLKLLREL 171
Query: 529 SSK---TVIYATHQVEFLP-AADLILVIKDGKITQAGKYSDILNSGTDFM--ELVGAH 580
++ TH + + AD + V+ DG+I + G +I + +L+ AH
Sbjct: 172 RQLFGTGILLITHDLGVVARIADEVAVMDDGRIVERGTVKEIFYNPKHETTRKLLSAH 229
|
This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous [Transport and binding proteins, Cations and iron carrying compounds]. Length = 230 |
| >gnl|CDD|227019 COG4674, COG4674, Uncharacterized ABC-type transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 44.6 bits (106), Expect = 1e-04
Identities = 52/229 (22%), Positives = 90/229 (39%), Gaps = 50/229 (21%)
Query: 376 LRNINLKVFHGMRVAVCGTVGSGKSSCLSCILGGVPKESGIIRLCGTK-------AYVA- 427
L +++ V G + G G+GK++ + I G + G + G +A
Sbjct: 21 LNDLSFSVDPGELRVLIGPNGAGKTTLMDVITGKTRPQEGEVLFDGDTDLTKLPEHRIAR 80
Query: 428 -------QSPWI-QSGKIEEN-------------ILFGKEMDRERYERVLEACSLKKDLE 466
Q P + ++ + EN LF + + E R+ E L
Sbjct: 81 AGIGRKFQKPTVFENLTVRENLELALNRDKSVFASLFAR-LRAEERRRIDEL------LA 133
Query: 467 VLPFGDQTIIGERGI---NLSGGQKQRIQIARPLYQDADIFLLDDPFSPVDD---HTGAH 520
+ GD ER LS GQKQ ++I L QD + LLD+P + + D A
Sbjct: 134 TIGLGD-----ERDRLAALLSHGQKQWLEIGMLLAQDPKLLLLDEPVAGMTDAETEKTAE 188
Query: 521 LFKFCWVSSSKTVIYATHQVEFLPA-ADLILVIKDGKITQAGKYSDILN 568
L K ++ +++ H + F+ AD + V+ +G + G ++ N
Sbjct: 189 LLKS--LAGKHSILVVEHDMGFVREIADKVTVLHEGSVLAEGSLDEVQN 235
|
Length = 249 |
| >gnl|CDD|226592 COG4107, PhnK, ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 45.1 bits (107), Expect = 1e-04
Identities = 52/228 (22%), Positives = 94/228 (41%), Gaps = 45/228 (19%)
Query: 377 RNINLKVFHGMRVAVCGTVGSGKSSCLSCILGGVPKESGII--RLCG------------T 422
R+++ ++ G + + G GSGK++ L CI G + ++G + R+
Sbjct: 23 RDVSFDLYPGEVLGIVGESGSGKTTLLKCISGRLTPDAGTVTYRMRDGQPRDLYTMSEAE 82
Query: 423 KAYVAQSPWIQSGKIEENILFGKEMD-------RER--------YERV-LEACSLKKDLE 466
+ + ++ W G + +N G M ER Y + EA +++E
Sbjct: 83 RRRLLRTEW---GFVHQNPRDGLRMQVSAGGNIGERLMAIGARHYGNIRAEAQDWLEEVE 139
Query: 467 VLPFGDQTIIGERGINLSGGQKQRIQIARPLYQDADIFLLDDPFSPVDDHTGAHLFKFCW 526
+ D I + SGG +QR+QIAR L + +D+P +D A L
Sbjct: 140 I----DLDRIDDLPRTFSGGMQQRLQIARNLVTRPRLVFMDEPTGGLDVSVQARLLDLLR 195
Query: 527 ---VSSSKTVIYATHQ---VEFLPAADLILVIKDGKITQAGKYSDILN 568
V+ TH L AD ++V+K G++ ++G +L+
Sbjct: 196 GLVRELGLAVVIVTHDLAVARLL--ADRLMVMKQGQVVESGLTDRVLD 241
|
Length = 258 |
| >gnl|CDD|226961 COG4598, HisP, ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 44.7 bits (106), Expect = 1e-04
Identities = 49/207 (23%), Positives = 91/207 (43%), Gaps = 31/207 (14%)
Query: 967 GRTGSGKSTLIQTLFRIVESTAGHILIDGKDISLIG-------------LHDLRTRLSII 1013
G +GSGKST ++ + + + +AG I ++G++I L L LRTRL ++
Sbjct: 39 GSSGSGKSTFLRCINFLEKPSAGSIRVNGEEIRLKRDKDGQLKPADKRQLQRLRTRLGMV 98
Query: 1014 PQD------PTMFEGTTRSNLDPLEEHADEQIWEA---LDKCQLGDEVRKKKGKLD---- 1060
Q T+ E + + L E I A L K + ++ L
Sbjct: 99 FQHFNLWSHMTVLENVIEAPVHVLGVSKAEAIERAEKYLAKVGIAEKADAYPAHLSGGQQ 158
Query: 1061 ---SQGRVLLKKSKVLVLDEATASVDTATDNQIQQTLRQHFSDC-TVVTIAHRITSVLD- 1115
+ R L + +V++ DE T+++D ++ + ++ + T+V + H + D
Sbjct: 159 QRVAIARALAMEPEVMLFDEPTSALDPELVGEVLKVMQDLAEEGRTMVVVTHEMGFARDV 218
Query: 1116 SAMVLLLNHGLIKEYDSPTKLLENKSS 1142
S+ V+ L+ G I+E P ++ N S
Sbjct: 219 SSHVIFLHQGKIEEEGPPEQVFGNPQS 245
|
Length = 256 |
| >gnl|CDD|237894 PRK15064, PRK15064, ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 45.7 bits (109), Expect = 1e-04
Identities = 56/222 (25%), Positives = 104/222 (46%), Gaps = 23/222 (10%)
Query: 357 AIEIIDGSFSWDFSSPNPTLRNINLKVFHGMRVAVCGTVGSGKSSCLSCILGGVPKESGI 416
A+E+ + + +D P +N+NL + G R+A+ G G GK++ L ++G + +SG
Sbjct: 319 ALEVENLTKGFD---NGPLFKNLNLLLEAGERLAIIGENGVGKTTLLRTLVGELEPDSGT 375
Query: 417 IRLCGTKA---YVAQSPWIQSGKIEENILFGKEMDRERYERVLEACSLKKDLEVLPFGDQ 473
++ A Y AQ + E ++ M + R E E +++ L L F Q
Sbjct: 376 VKW-SENANIGYYAQDH---AYDFENDLTLFDWMSQWRQEGDDEQ-AVRGTLGRLLFS-Q 429
Query: 474 TIIGERGINLSGGQKQRIQIARPLYQDADIFLLDDPFSPVD----DHTGAHLFKFCWVSS 529
I + LSGG+K R+ + + Q ++ ++D+P + +D + L K+
Sbjct: 430 DDIKKSVKVLSGGEKGRMLFGKLMMQKPNVLVMDEPTNHMDMESIESLNMALEKY----- 484
Query: 530 SKTVIYATHQVEFLPA-ADLILVIKDGKITQ-AGKYSDILNS 569
T+I+ +H EF+ + A I+ I + +G Y + L S
Sbjct: 485 EGTLIFVSHDREFVSSLATRIIEITPDGVVDFSGTYEEYLRS 526
|
Length = 530 |
| >gnl|CDD|237422 PRK13548, hmuV, hemin importer ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 44.8 bits (107), Expect = 1e-04
Identities = 55/232 (23%), Positives = 91/232 (39%), Gaps = 58/232 (25%)
Query: 376 LRNINLKVFHGMRVAVCGTVGSGKSSCLSCILGGVPKESGIIRLCG-------------T 422
L +++L + G VA+ G G+GKS+ L + G + +SG +RL G
Sbjct: 18 LDDVSLTLRPGEVVAILGPNGAGKSTLLRALSGELSPDSGEVRLNGRPLADWSPAELARR 77
Query: 423 KAYVAQS-----PWIQSGKIEENILFG-------KEMDRERYERVLEACSLKKDLEVLPF 470
+A + Q P+ +EE + G + D L ++
Sbjct: 78 RAVLPQHSSLSFPF----TVEEVVAMGRAPHGLSRAEDDALVAAALAQV------DLAHL 127
Query: 471 GD---QTIIGERGINLSGGQKQRIQIARPLYQDAD------IFLLDDPFSPVD---DHTG 518
LSGG++QR+Q+AR L Q + LLD+P S +D H
Sbjct: 128 AGRDYPQ--------LSGGEQQRVQLARVLAQLWEPDGPPRWLLLDEPTSALDLAHQHHV 179
Query: 519 AHLFKFCWVSSSKTVIYATHQVEFLPA--ADLILVIKDGKITQAGKYSDILN 568
L + VI H + L A AD I+++ G++ G +++L
Sbjct: 180 LRLARQLAHERGLAVIVVLHDLN-LAARYADRIVLLHQGRLVADGTPAEVLT 230
|
Length = 258 |
| >gnl|CDD|234806 PRK00635, PRK00635, excinuclease ABC subunit A; Provisional | Back alignment and domain information |
|---|
Score = 46.0 bits (109), Expect = 1e-04
Identities = 31/105 (29%), Positives = 49/105 (46%), Gaps = 11/105 (10%)
Query: 476 IGERGINLSGGQKQRIQIARPLY---QDADIFLLDDPFSPVDDHTGAHLFKF--CWVSSS 530
+G+ +LS +K I+IA+ LY + +FLLD+ + +D+ + L VS
Sbjct: 1693 LGQNLSSLSLSEKIAIKIAKFLYLPPKHPTLFLLDEIATSLDNQQKSALLVQLRTLVSLG 1752
Query: 531 KTVIYATHQVEFLPAADLILVI------KDGKITQAGKYSDILNS 569
+VIY H L AD ++ + GKI +G DI S
Sbjct: 1753 HSVIYIDHDPALLKQADYLIEMGPGSGKTGGKILFSGPPKDISAS 1797
|
Length = 1809 |
| >gnl|CDD|237917 PRK15134, PRK15134, microcin C ABC transporter ATP-binding protein YejF; Provisional | Back alignment and domain information |
|---|
Score = 45.5 bits (108), Expect = 1e-04
Identities = 45/164 (27%), Positives = 71/164 (43%), Gaps = 38/164 (23%)
Query: 963 LVLRGRTGSGKSTLIQTLFRIVESTAGHILIDGKDISLIG---LHDLRTRLSIIPQDPTM 1019
L L G +GSGKST L R++ S G I DG+ + + L +R R+ ++ QDP
Sbjct: 315 LGLVGESGSGKSTTGLALLRLINSQ-GEIWFDGQPLHNLNRRQLLPVRHRIQVVFQDPN- 372
Query: 1020 FEGTTRSNLDP-----------LEEHA--------DEQIWEALDKCQLGDEVRKKKGKLD 1060
S+L+P L H ++Q+ +++ L E R +
Sbjct: 373 ------SSLNPRLNVLQIIEEGLRVHQPTLSAAQREQQVIAVMEEVGLDPETRHRYPAEF 426
Query: 1061 SQG--------RVLLKKSKVLVLDEATASVDTATDNQIQQTLRQ 1096
S G R L+ K +++LDE T+S+D QI L+
Sbjct: 427 SGGQRQRIAIARALILKPSLIILDEPTSSLDKTVQAQILALLKS 470
|
Length = 529 |
| >gnl|CDD|185336 PRK15439, PRK15439, autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional | Back alignment and domain information |
|---|
Score = 45.0 bits (107), Expect = 2e-04
Identities = 49/165 (29%), Positives = 82/165 (49%), Gaps = 25/165 (15%)
Query: 965 LRGRTGSGKSTLIQTLFRIVESTAGHILIDGKDIS-LIGLHDLRTRLSIIPQDPTMFEG- 1022
L G G+GKSTL++ + IV +G + I G + L + + ++PQ+P +F
Sbjct: 42 LLGGNGAGKSTLMKIIAGIVPPDSGTLEIGGNPCARLTPAKAHQLGIYLVPQEPLLFPNL 101
Query: 1023 TTRSN-LDPLEEHAD-----EQIWEALDKCQLGDEVRKKKGKL---DSQ----GRVLLKK 1069
+ + N L L + +Q+ AL CQL + G L D Q R L++
Sbjct: 102 SVKENILFGLPKRQASMQKMKQLLAALG-CQLDLDS--SAGSLEVADRQIVEILRGLMRD 158
Query: 1070 SKVLVLDEATASVDTA-TDN---QIQQTLRQHFSDCTVVTIAHRI 1110
S++L+LDE TAS+ A T+ +I++ L Q +V I+H++
Sbjct: 159 SRILILDEPTASLTPAETERLFSRIRELLAQ---GVGIVFISHKL 200
|
Length = 510 |
| >gnl|CDD|226635 COG4161, ArtP, ABC-type arginine transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 44.1 bits (104), Expect = 2e-04
Identities = 49/211 (23%), Positives = 90/211 (42%), Gaps = 30/211 (14%)
Query: 963 LVLRGRTGSGKSTLIQTLFRIVESTAGHILIDGKDISLI------GLHDLRTRLSIIPQD 1016
LVL G +G+GKS+L++ L + +G + I G + DLR + ++ Q
Sbjct: 31 LVLLGPSGAGKSSLLRVLNLLEMPRSGTLNIAGNHFDFSKTPSDKAIRDLRRNVGMVFQQ 90
Query: 1017 ----PTMFEGTTRSNL--DPL------EEHADEQIWEALDKCQLGDEVRKKKGKLD--SQ 1062
P + T + NL P ++ A + + L + +L + L Q
Sbjct: 91 YNLWPHL---TVQENLIEAPCRVLGLSKDQALARAEKLLKRLRLKPYADRYPLHLSGGQQ 147
Query: 1063 GRV-----LLKKSKVLVLDEATASVDTATDNQIQQTLRQ-HFSDCTVVTIAHRITSVLDS 1116
RV L+ + +VL+ DE TA++D QI +++ + T V + H + +
Sbjct: 148 QRVAIARALMMEPQVLLFDEPTAALDPEITAQIVSIIKELAETGITQVIVTHEVEVARKT 207
Query: 1117 AM-VLLLNHGLIKEYDSPTKLLENKSSSFAQ 1146
A V+ + +G I E + E ++ +F
Sbjct: 208 ASRVVYMENGHIVEQGDASCFTEPQTEAFKN 238
|
Length = 242 |
| >gnl|CDD|184208 PRK13649, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 44.7 bits (106), Expect = 2e-04
Identities = 56/219 (25%), Positives = 93/219 (42%), Gaps = 35/219 (15%)
Query: 967 GRTGSGKSTLIQTLFRIVESTAGHILIDGKDISLIG----LHDLRTRLSIIPQDP--TMF 1020
G TGSGKST++Q L + T G + +D I+ + +R ++ ++ Q P +F
Sbjct: 40 GHTGSGKSTIMQLLNGLHVPTQGSVRVDDTLITSTSKNKDIKQIRKKVGLVFQFPESQLF 99
Query: 1021 EGTT-------RSNLDPLEEHADEQIWEALDKCQLGDEVRKKKGKLDSQGR--------V 1065
E T N +E A+ E L + + + +K S G+ +
Sbjct: 100 EETVLKDVAFGPQNFGVSQEEAEALAREKLALVGISESLFEKNPFELSGGQMRRVAIAGI 159
Query: 1066 LLKKSKVLVLDEATASVDTATDNQIQQTLRQ-HFSDCTVVTIAHRITSVLDSA-MVLLLN 1123
L + K+LVLDE TA +D ++ ++ H S T+V + H + V + A V +L
Sbjct: 160 LAMEPKILVLDEPTAGLDPKGRKELMTLFKKLHQSGMTIVLVTHLMDDVANYADFVYVLE 219
Query: 1124 HGLIKEYDSPTK------LLENKS------SSFAQLVAE 1150
G + P LE K + FAQ +A+
Sbjct: 220 KGKLVLSGKPKDIFQDVDFLEEKQLGVPKITKFAQRLAD 258
|
Length = 280 |
| >gnl|CDD|237652 PRK14275, PRK14275, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 44.5 bits (105), Expect = 2e-04
Identities = 49/202 (24%), Positives = 91/202 (45%), Gaps = 31/202 (15%)
Query: 967 GRTGSGKSTLIQTLFRIVE-----STAGHILIDGKDI--SLIGLHDLRTRLSIIPQDPTM 1019
G +G GKST ++ + R+ + T G ++ DG+DI LR ++ ++ Q P
Sbjct: 72 GPSGCGKSTFLRAINRMNDLIPSCHTTGALMFDGEDIYGKFTDEVLLRKKIGMVFQKPNP 131
Query: 1020 FEGTTRSNL--DPL------EEHADEQIWEALDKCQLGDEV--RKKKGKLDSQG------ 1063
F + N+ P ++ +E + ++L K L DEV R K L G
Sbjct: 132 FPKSIFDNIAYGPRLHGINDKKQLEEIVEKSLRKAALWDEVSDRLDKNALGLSGGQQQRL 191
Query: 1064 ---RVLLKKSKVLVLDEATASVDTATDNQIQQTLRQHFSDCTVVTIAHRI---TSVLDSA 1117
R L + ++L+LDE T+++D +I+ +++ T++ + H + + V D
Sbjct: 192 CVARTLAVEPEILLLDEPTSALDPKATAKIEDLIQELRGSYTIMIVTHNMQQASRVSDYT 251
Query: 1118 MVLLLNHGLIKEYDSPTKLLEN 1139
M G++ E+ +L N
Sbjct: 252 M--FFYEGVLVEHAPTAQLFTN 271
|
Length = 286 |
| >gnl|CDD|226961 COG4598, HisP, ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 44.3 bits (105), Expect = 2e-04
Identities = 56/252 (22%), Positives = 102/252 (40%), Gaps = 58/252 (23%)
Query: 352 GNSDTAIEIIDGSFSWDFSSPNPTLRNINLKVFHGMRVAVCGTVGSGKSSCLSCI----- 406
++ A+E+ D + + L+ ++L+ G +++ G+ GSGKS+ L CI
Sbjct: 1 DAAENALEVEDLHKRY---GEHEVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEK 57
Query: 407 -------LGG-------------VPKESGIIRLCGTK-AYVAQS--PWIQSGKIEENILF 443
+ G P + ++ T+ V Q W + EN++
Sbjct: 58 PSAGSIRVNGEEIRLKRDKDGQLKPADKRQLQRLRTRLGMVFQHFNLW-SHMTVLENVIE 116
Query: 444 G--------KEMDRERYERVLEACSLKKDLEVLPFGDQTIIGERGINLSGGQKQRIQIAR 495
K ER E+ L + + + P +LSGGQ+QR+ IAR
Sbjct: 117 APVHVLGVSKAEAIERAEKYLAKVGIAEKADAYP-----------AHLSGGQQQRVAIAR 165
Query: 496 PLYQDADIFLLDDPFSPVDDHTGAHLFKFC--WVSSSKTVIYATHQVEFLPAADL---IL 550
L + ++ L D+P S +D + K +T++ TH++ F A D+ ++
Sbjct: 166 ALAMEPEVMLFDEPTSALDPELVGEVLKVMQDLAEEGRTMVVVTHEMGF--ARDVSSHVI 223
Query: 551 VIKDGKITQAGK 562
+ GKI + G
Sbjct: 224 FLHQGKIEEEGP 235
|
Length = 256 |
| >gnl|CDD|172732 PRK14244, PRK14244, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 44.4 bits (105), Expect = 2e-04
Identities = 51/232 (21%), Positives = 97/232 (41%), Gaps = 37/232 (15%)
Query: 954 QVRYAPNLPLVLR------GRTGSGKSTLIQTLFRIVE-----STAGHILIDGKDISLIG 1002
Q+ + NL + R G +G GKST ++ R+ + G + IDG D+ +
Sbjct: 19 QILFDINLDIYKREVTAFIGPSGCGKSTFLRCFNRMNDFVPNCKVKGELDIDGIDVYSVD 78
Query: 1003 LHD--LRTRLSIIPQDPTMFEGTTRSN---------LDPLEEHADEQIWEALDKCQLGDE 1051
+ LR ++ ++ Q P F + N L ++ DE + ++L L +E
Sbjct: 79 TNVVLLRAKVGMVFQKPNPFPKSIYDNVAYGPKLHGLAKNKKKLDEIVEKSLTSVGLWEE 138
Query: 1052 V--RKKKGKLDSQG---------RVLLKKSKVLVLDEATASVDTATDNQIQQTLRQHFSD 1100
+ R K + G R + K +L++DE +++D N I+ +++ +
Sbjct: 139 LGDRLKDSAFELSGGQQQRLCIARAIAVKPTMLLMDEPCSALDPVATNVIENLIQELKKN 198
Query: 1101 CTVVTIAHRITSVLD-SAMVLLLNHGLIKEYDSPTKLLENKSSSFAQLVAEY 1151
T++ + H + S V G I EY++ ++ +N SS Y
Sbjct: 199 FTIIVVTHSMKQAKKVSDRVAFFQSGRIVEYNTTQEIFKNPQSS---KTKRY 247
|
Length = 251 |
| >gnl|CDD|172732 PRK14244, PRK14244, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 44.1 bits (104), Expect = 2e-04
Identities = 53/221 (23%), Positives = 93/221 (42%), Gaps = 30/221 (13%)
Query: 373 NPTLRNINLKVFHGMRVAVCGTVGSGKSSCLSC---ILGGVP--KESGIIRLCGTKAY-- 425
L +INL ++ A G G GKS+ L C + VP K G + + G Y
Sbjct: 18 KQILFDINLDIYKREVTAFIGPSGCGKSTFLRCFNRMNDFVPNCKVKGELDIDGIDVYSV 77
Query: 426 -------------VAQSPWIQSGKIEENILFGKEM-----DRERYERVLEACSLKKDLEV 467
V Q P I +N+ +G ++ ++++ + ++E SL
Sbjct: 78 DTNVVLLRAKVGMVFQKPNPFPKSIYDNVAYGPKLHGLAKNKKKLDEIVEK-SLTSVGLW 136
Query: 468 LPFGDQTIIGERGINLSGGQKQRIQIARPLYQDADIFLLDDPFSPVDD-HTGAHLFKFCW 526
GD+ + + LSGGQ+QR+ IAR + + L+D+P S +D T
Sbjct: 137 EELGDR--LKDSAFELSGGQQQRLCIARAIAVKPTMLLMDEPCSALDPVATNVIENLIQE 194
Query: 527 VSSSKTVIYATHQV-EFLPAADLILVIKDGKITQAGKYSDI 566
+ + T+I TH + + +D + + G+I + +I
Sbjct: 195 LKKNFTIIVVTHSMKQAKKVSDRVAFFQSGRIVEYNTTQEI 235
|
Length = 251 |
| >gnl|CDD|213203 cd03236, ABC_RNaseL_inhibitor_domain1, The ATP-binding cassette domain 1 of RNase L inhibitor | Back alignment and domain information |
|---|
Score = 44.3 bits (105), Expect = 2e-04
Identities = 29/91 (31%), Positives = 45/91 (49%), Gaps = 15/91 (16%)
Query: 425 YVAQSPWIQSGKIEENILFGKEMDRERYERVLEACSLKKDLEVLPFGDQTIIGERGI-NL 483
YV P GK+ E L K+ +R + + +++ L+ L+ R I L
Sbjct: 95 YVDLIPKAVKGKVGE--LLKKKDERGKLDELVDQLELRHVLD------------RNIDQL 140
Query: 484 SGGQKQRIQIARPLYQDADIFLLDDPFSPVD 514
SGG+ QR+ IA L +DAD + D+P S +D
Sbjct: 141 SGGELQRVAIAAALARDADFYFFDEPSSYLD 171
|
The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI s are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLIs have an N-terminal Fe-S domain and two nucleotide binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology. Length = 255 |
| >gnl|CDD|132561 TIGR03522, GldA_ABC_ATP, gliding motility-associated ABC transporter ATP-binding subunit GldA | Back alignment and domain information |
|---|
Score = 44.4 bits (105), Expect = 2e-04
Identities = 49/200 (24%), Positives = 90/200 (45%), Gaps = 37/200 (18%)
Query: 393 GTVGSGKSSCLSCILGGVPKESGIIRLCGTKAYVAQSPWIQSGKI----EENILF----- 443
G G+GKS+ + I G +P +SG +++CG V Q+P I E N L+
Sbjct: 35 GPNGAGKSTTMKIITGYLPPDSGSVQVCGED--VLQNPKEVQRNIGYLPEHNPLYLDMYV 92
Query: 444 -------------GKEMDRERYERVLEACSLKKDLEVLPFGDQTIIGERGINLSGGQKQR 490
++ ++R E ++E L+ + IG+ LS G +QR
Sbjct: 93 REYLQFIAGIYGMKGQLLKQRVEEMIELVGLRPE-------QHKKIGQ----LSKGYRQR 141
Query: 491 IQIARPLYQDADIFLLDDPFSPVDDHTGAHLFKFC-WVSSSKTVIYATHQVEFLPA-ADL 548
+ +A+ L D + +LD+P + +D + + + KT+I +TH ++ + A D
Sbjct: 142 VGLAQALIHDPKVLILDEPTTGLDPNQLVEIRNVIKNIGKDKTIILSTHIMQEVEAICDR 201
Query: 549 ILVIKDGKITQAGKYSDILN 568
+++I GKI K ++
Sbjct: 202 VIIINKGKIVADKKLDELSA 221
|
Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility. Length = 301 |
| >gnl|CDD|184198 PRK13638, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 44.2 bits (104), Expect = 2e-04
Identities = 55/205 (26%), Positives = 90/205 (43%), Gaps = 22/205 (10%)
Query: 950 IRHLQVRYAPNLPLVLRGRTGSGKSTLIQTLFRIVESTAGHILIDGK--DISLIGLHDLR 1007
++ L + ++ + L G G GKSTL L ++ G +L GK D S GL LR
Sbjct: 17 LKGLNLDFSLSPVTGLVGANGCGKSTLFMNLSGLLRPQKGAVLWQGKPLDYSKRGLLALR 76
Query: 1008 TRLSIIPQDP--TMFEGTTRS-------NLDPLEEHADEQIWEALDKCQLGDEVRKKKGK 1058
+++ + QDP +F S NL E ++ EAL R + +
Sbjct: 77 QQVATVFQDPEQQIFYTDIDSDIAFSLRNLGVPEAEITRRVDEALTLVD-AQHFRHQPIQ 135
Query: 1059 LDSQGR--------VLLKKSKVLVLDEATASVDTATDNQIQQTLRQHFSDCTVVTI-AHR 1109
S G+ L+ +++ L+LDE TA +D A Q+ +R+ + V I +H
Sbjct: 136 CLSHGQKKRVAIAGALVLQARYLLLDEPTAGLDPAGRTQMIAIIRRIVAQGNHVIISSHD 195
Query: 1110 ITSVLD-SAMVLLLNHGLIKEYDSP 1133
I + + S V +L G I + +P
Sbjct: 196 IDLIYEISDAVYVLRQGQILTHGAP 220
|
Length = 271 |
| >gnl|CDD|226620 COG4136, COG4136, ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 43.3 bits (102), Expect = 2e-04
Identities = 47/205 (22%), Positives = 79/205 (38%), Gaps = 29/205 (14%)
Query: 376 LRNINLKVFHGMRVAVCGTVGSGKSSCLSCILGGVPKE---SGIIRLCGTK--------- 423
L N+N + G V + G G GKS+ LS ++G + + +G + L +
Sbjct: 18 LANVNFTIAKGEIVTLMGPSGCGKSTLLSWMIGALAGQFSCTGELWLNEQRLDMLPAAQR 77
Query: 424 --AYVAQSPWI-QSGKIEENILFGKEMDRERYERVLEACSLKKDLEVLPFGDQTIIGERG 480
+ Q + + +N+LF + R A + + + Q
Sbjct: 78 QIGILFQDALLFPHLSVGQNLLFALPATLKGNARRNAANAALERSGLDGAFHQD-----P 132
Query: 481 INLSGGQKQRIQIARPLYQDADIFLLDDPFSPVDDHTGAHLFKFCWVSSSKT-----VIY 535
LSGGQ+ R+ + R L LLD+PFS +D + WV S +
Sbjct: 133 ATLSGGQRARVALLRALLAQPKALLLDEPFSRLDVALRDQFRQ--WVFSEVRAAGIPTVQ 190
Query: 536 ATHQVEFLPAADLILVIKDGKITQA 560
TH ++ +PA VI+ + Q
Sbjct: 191 VTHDLQDVPAGS--RVIEMAQWEQN 213
|
Length = 213 |
| >gnl|CDD|213265 cd03298, ABC_ThiQ_thiamine_transporter, ATP-binding cassette domain of the thiamine transport system | Back alignment and domain information |
|---|
Score = 43.3 bits (102), Expect = 3e-04
Identities = 44/172 (25%), Positives = 77/172 (44%), Gaps = 20/172 (11%)
Query: 939 NNSRPSHGEVNIRHLQVRYAPNLPLVLRGRTGSGKSTLIQTLFRIVESTAGHILIDGKDI 998
+ R S+GE + H + +A + G +GSGKSTL+ + +G +LI+G D+
Sbjct: 4 DKIRFSYGEQPM-HFDLTFAQGEITAIVGPSGSGKSTLLNLIAGFETPQSGRVLINGVDV 62
Query: 999 SLIGLHDLRTRLSIIPQDPTMFEG-TTRSNLD-------PLEEHADEQIWEALDKCQLGD 1050
+ +S++ Q+ +F T N+ L + I AL + L
Sbjct: 63 TA--APPADRPVSMLFQENNLFAHLTVEQNVGLGLSPGLKLTAEDRQAIEVALARVGLAG 120
Query: 1051 EVRKKKGKLDSQG--------RVLLKKSKVLVLDEATASVDTATDNQIQQTL 1094
++ G+L S G RVL++ VL+LDE A++D A ++ +
Sbjct: 121 LEKRLPGEL-SGGERQRVALARVLVRDKPVLLLDEPFAALDPALRAEMLDLV 171
|
Part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP. Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 211 |
| >gnl|CDD|240339 PTZ00265, PTZ00265, multidrug resistance protein (mdr1); Provisional | Back alignment and domain information |
|---|
Score = 45.0 bits (106), Expect = 3e-04
Identities = 30/135 (22%), Positives = 61/135 (45%), Gaps = 19/135 (14%)
Query: 967 GRTGSGKSTLIQTLFRIVESTAGHILI-DGKDISLIGLHDLRTRLSIIPQDPTMFEGTTR 1025
G +G GKST+++ + R+ + T G I+I D ++ I L R+++ ++ QDP +F + +
Sbjct: 418 GESGCGKSTILKLIERLYDPTEGDIIINDSHNLKDINLKWWRSKIGVVSQDPLLFSNSIK 477
Query: 1026 SN----------LDPLEEHADEQIWEALDKCQLGDEVRKKKG--------KLDSQGRVLL 1067
+N L+ L + +E ++ + + R K DS + +
Sbjct: 478 NNIKYSLYSLKDLEALSNYYNEDGNDSQENKNKRNSCRAKCAGDLNDMSNTTDSNELIEM 537
Query: 1068 KKSKVLVLDEATASV 1082
+K+ + D V
Sbjct: 538 RKNYQTIKDSEVVDV 552
|
Length = 1466 |
| >gnl|CDD|130252 TIGR01184, ntrCD, nitrate transport ATP-binding subunits C and D | Back alignment and domain information |
|---|
Score = 43.2 bits (102), Expect = 3e-04
Identities = 47/182 (25%), Positives = 87/182 (47%), Gaps = 27/182 (14%)
Query: 965 LRGRTGSGKSTLIQTLFRIVESTAGHILIDGKDISLIGLHDLRTRLSIIPQDPTMFEG-T 1023
L G +G GKSTL+ + + + T+G ++++GK I+ G + ++ Q+ ++ T
Sbjct: 16 LIGHSGCGKSTLLNLISGLAQPTSGGVILEGKQITEPGPDRM-----VVFQNYSLLPWLT 70
Query: 1024 TRSNL---------DPLEEHADEQIWEALDKCQLGDEVRKKKGKLDSQG--------RVL 1066
R N+ D + + E + L + K+ G+L S G R L
Sbjct: 71 VRENIALAVDRVLPDLSKSERRAIVEEHIALVGLTEAADKRPGQL-SGGMKQRVAIARAL 129
Query: 1067 LKKSKVLVLDEATASVDTATDNQIQQTLRQHFSD--CTVVTIAHRI-TSVLDSAMVLLLN 1123
+ KVL+LDE ++D T +Q+ L Q + + TV+ + H + ++L S V++L
Sbjct: 130 SIRPKVLLLDEPFGALDALTRGNLQEELMQIWEEHRVTVLMVTHDVDEALLLSDRVVMLT 189
Query: 1124 HG 1125
+G
Sbjct: 190 NG 191
|
This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase [Transport and binding proteins, Anions, Transport and binding proteins, Other]. Length = 230 |
| >gnl|CDD|226647 COG4181, COG4181, Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Score = 43.2 bits (102), Expect = 3e-04
Identities = 51/212 (24%), Positives = 91/212 (42%), Gaps = 35/212 (16%)
Query: 930 ALVIEATKPNNSRPS-HGEVNI-RHLQVRYAPNLPLVLRGRTGSGKSTLIQTLFRIVEST 987
+IE + + GE++I + +++ + + G +GSGKSTL+ L + + +
Sbjct: 4 ENIIEVHHLSKTVGQGEGELSILKGVELVVKRGETVAIVGPSGSGKSTLLAVLAGLDDPS 63
Query: 988 AGHILIDGKDISLI---GLHDLRTR-LSIIPQD----PTMFEGTTRSNLD-PLE----EH 1034
+G + + G+ + + LR R + + Q P + T N+ PLE
Sbjct: 64 SGEVRLLGQPLHKLDEDARAALRARHVGFVFQSFHLIPNL---TALENVALPLELRGESS 120
Query: 1035 ADEQIW--EALDKCQLGDEVRKKKGKLD--SQGRVLLKKS-----KVLVLDEATASVDTA 1085
AD + L+ LG + +L Q RV L ++ VL DE T ++D A
Sbjct: 121 ADSRAGAKALLEAVGLGKRLTHYPAQLSGGEQQRVALARAFAGRPDVLFADEPTGNLDRA 180
Query: 1086 TDNQIQQTL----RQHFSDCTVVT----IAHR 1109
T ++I L R+ + +VT +A R
Sbjct: 181 TGDKIADLLFALNRERGTTLVLVTHDPQLAAR 212
|
Length = 228 |
| >gnl|CDD|214640 smart00382, AAA, ATPases associated with a variety of cellular activities | Back alignment and domain information |
|---|
Score = 42.4 bits (99), Expect = 3e-04
Identities = 28/171 (16%), Positives = 54/171 (31%), Gaps = 40/171 (23%)
Query: 959 PNLPLVLRGRTGSGKSTLIQTLFRIVESTAGHILIDGKDISLIGLHDLRTRLSIIPQDPT 1018
P +++ G GSGK+TL + L R + G ++ + L + D +L +I
Sbjct: 1 PGEVILIVGPPGSGKTTLARALARELGPPGGGVIYIDGEDILEEVLD---QLLLIIVGGK 57
Query: 1019 MFEGTTRSNLDPLEEHADEQIWEALDKCQLGDEVRKKKGKLDSQGRVLLKKSKVLVLDEA 1078
G+ L A + K VL+LDE
Sbjct: 58 KASGSGELRLRLALALARKL------------------------------KPDVLILDEI 87
Query: 1079 TASVDTATDNQIQQTLR-------QHFSDCTVVTIAHRITSVLDSAMVLLL 1122
T+ +D + + + + TV+ + + + +
Sbjct: 88 TSLLDAEQEALLLLLEELRLLLLLKSEKNLTVILTTNDEKDLGPALLRRRF 138
|
AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment. Length = 148 |
| >gnl|CDD|234200 TIGR03411, urea_trans_UrtD, urea ABC transporter, ATP-binding protein UrtD | Back alignment and domain information |
|---|
Score = 43.3 bits (103), Expect = 3e-04
Identities = 46/174 (26%), Positives = 76/174 (43%), Gaps = 34/174 (19%)
Query: 964 VLRGRTGSGKSTLIQTLFRIVESTAGHILIDGKDISLIGLHDLRTRLSIIP--QDPTMFE 1021
V+ G G+GK+T++ + G +L G D++ + H + R I Q PT+FE
Sbjct: 32 VIIGPNGAGKTTMMDVITGKTRPDEGSVLFGGTDLTGLPEHQI-ARAGIGRKFQKPTVFE 90
Query: 1022 G-TTRSNLD---------------PLEEHADEQIWEALDKCQLGDEVRKKKGKLDSQGR- 1064
T NL+ L ++I E L+ L DE + G L S G+
Sbjct: 91 NLTVFENLELALPRDKSVFASLFFRLSAEEKDRIEEVLETIGLADEADRLAGLL-SHGQK 149
Query: 1065 -------VLLKKSKVLVLDEATASVDTATDNQIQQT---LRQHFSDCTVVTIAH 1108
+L++ K+L+LDE A + TD + ++T L+ +VV + H
Sbjct: 150 QWLEIGMLLMQDPKLLLLDEPVAGM---TDEETEKTAELLKSLAGKHSVVVVEH 200
|
Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity [Transport and binding proteins, Amino acids, peptides and amines]. Length = 242 |
| >gnl|CDD|213234 cd03267, ABC_NatA_like, ATP-binding cassette domain of an uncharacterized transporter similar in sequence to NatA | Back alignment and domain information |
|---|
Score = 43.5 bits (103), Expect = 3e-04
Identities = 52/212 (24%), Positives = 90/212 (42%), Gaps = 40/212 (18%)
Query: 374 PTLRNINLKVFHGMRVAVCGTVGSGKSSCLSCILGGVPKESGIIRLCGTKAYVAQSPWIQ 433
L+ I+ + G V G G+GK++ L + G + SG +R+ G V PW +
Sbjct: 35 EALKGISFTIEKGEIVGFIGPNGAGKTTTLKILSGLLQPTSGEVRVAG---LV---PWKR 88
Query: 434 SGKIEENI--LFGK---------------------EMDRERYERVLEACSLKKDLEVLPF 470
K I +FG+ ++ R+++ L+ S DLE
Sbjct: 89 RKKFLRRIGVVFGQKTQLWWDLPVIDSFYLLAAIYDLPPARFKKRLDELSELLDLE--EL 146
Query: 471 GDQTIIGERGINLSGGQKQRIQIARPLYQDADIFLLDDPFSPVDDHTGAHLFKFCWVSSS 530
D + R LS GQ+ R +IA L + +I LD+P +D ++ F +
Sbjct: 147 LDTPV---R--QLSLGQRMRAEIAAALLHEPEILFLDEPTIGLDVVAQENIRNFLKEYNR 201
Query: 531 K---TVIYATHQVEFLPA-ADLILVIKDGKIT 558
+ TV+ +H ++ + A A +LVI G++
Sbjct: 202 ERGTTVLLTSHYMKDIEALARRVLVIDKGRLL 233
|
NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the proton-motive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunorubicin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single integral membrane protein. Length = 236 |
| >gnl|CDD|132050 TIGR03005, ectoine_ehuA, ectoine/hydroxyectoine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 43.3 bits (102), Expect = 4e-04
Identities = 47/216 (21%), Positives = 92/216 (42%), Gaps = 36/216 (16%)
Query: 958 APNLPLVLRGRTGSGKSTLIQTLFRIVESTAGHILIDGKDI--------SLIG-----LH 1004
A + L G +GSGKST+++ L + G I ++G+ + L+ L
Sbjct: 24 AAGEKVALIGPSGSGKSTILRILMTLEPIDEGQIQVEGEQLYHMPGRNGPLVPADEKHLR 83
Query: 1005 DLRTRLSIIPQDPTMFEGTTRSNLDPLEE-----------HADEQIWEALDKCQLGDEVR 1053
+R ++ ++ Q +F ++ LD + E A+++ E LD L D+
Sbjct: 84 QMRNKIGMVFQSFNLF--PHKTVLDNVTEAPVLVLGMARAEAEKRAMELLDMVGLADKAD 141
Query: 1054 KKKGKLD--SQGRVLLKKS-----KVLVLDEATASVDTATDNQIQQTLRQ--HFSDCTVV 1104
+L Q RV + ++ KV++ DE T+++D ++ +R+ D T++
Sbjct: 142 HMPAQLSGGQQQRVAIARALAMRPKVMLFDEVTSALDPELVGEVLNVIRRLASEHDLTML 201
Query: 1105 TIAHRITSVLDSA-MVLLLNHGLIKEYDSPTKLLEN 1139
+ H + + A V + G I E P ++
Sbjct: 202 LVTHEMGFAREFADRVCFFDKGRIVEQGKPDEIFRQ 237
|
Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins. Length = 252 |
| >gnl|CDD|223488 COG0411, LivG, ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 42.9 bits (102), Expect = 4e-04
Identities = 50/190 (26%), Positives = 82/190 (43%), Gaps = 37/190 (19%)
Query: 970 GSGKSTLIQTLFRIVESTAGHILIDGKDISLIGLHDLRTRLSIIP--QDPTMFEGTT--- 1024
G+GK+TL + + ++G ++ G+DI+ + H RL I Q +F G T
Sbjct: 40 GAGKTTLFNLITGFYKPSSGTVIFRGRDITGLPPH-RIARLGIARTFQITRLFPGLTVLE 98
Query: 1025 --------RSNLDPL---------EEHADEQIWEALDKCQLGDEVRKKKGKLDSQG---- 1063
R L L E A E+ E L+ LG+ + G L S G
Sbjct: 99 NVAVGAHARLGLSGLLGRPRARKEEREARERARELLEFVGLGELADRPAGNL-SYGQQRR 157
Query: 1064 ----RVLLKKSKVLVLDEATASV---DTATDNQIQQTLRQHFSDCTVVTIAHRITSVLDS 1116
R L + K+L+LDE A + +T ++ + LR T++ I H + V+
Sbjct: 158 LEIARALATQPKLLLLDEPAAGLNPEETEELAELIRELRDRG-GVTILLIEHDMKLVMGL 216
Query: 1117 A-MVLLLNHG 1125
A +++LN+G
Sbjct: 217 ADRIVVLNYG 226
|
Length = 250 |
| >gnl|CDD|172749 PRK14261, PRK14261, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 43.3 bits (102), Expect = 4e-04
Identities = 48/204 (23%), Positives = 89/204 (43%), Gaps = 31/204 (15%)
Query: 965 LRGRTGSGKSTLIQTLFRIVE-----STAGHILIDGKDISLIGLH--DLRTRLSIIPQDP 1017
L G +G GKSTL++ R+ + G IL +G++I G LR ++ ++ Q P
Sbjct: 37 LIGPSGCGKSTLLRCFNRMNDLIPGCRITGDILYNGENIMDSGADVVALRRKIGMVFQRP 96
Query: 1018 TMFEGTTRSNL--------DPLEEHADEQIWEALDKCQLGDEVRKK--KGKLDSQG---- 1063
F + N+ + ++ D + ++L L DEV+ + L G
Sbjct: 97 NPFPKSIYENVAYGPRIHGEKNKKTLDTIVEKSLKGAALWDEVKDRLHDSALSLSGGQQQ 156
Query: 1064 -----RVLLKKSKVLVLDEATASVDTATDNQIQQTLRQHFSDCTVVTIAHRI---TSVLD 1115
R L +V+++DE +++D +I+ + + TV+ + H + V D
Sbjct: 157 RLCIARTLAVNPEVILMDEPCSALDPIATAKIEDLIEDLKKEYTVIIVTHNMQQAARVSD 216
Query: 1116 SAMVLLLNHGLIKEYDSPTKLLEN 1139
+ L G + E+D T++ EN
Sbjct: 217 YTGFMYL--GKLIEFDKTTQIFEN 238
|
Length = 253 |
| >gnl|CDD|213236 cd03269, ABC_putative_ATPase, ATP-binding cassette domain of an uncharacterized transporter | Back alignment and domain information |
|---|
Score = 42.7 bits (101), Expect = 4e-04
Identities = 47/209 (22%), Positives = 88/209 (42%), Gaps = 30/209 (14%)
Query: 939 NNSRPSHGEVN-IRHLQVRYAPNLPLVLRGRTGSGKSTLIQTLFRIVESTAGHILIDGKD 997
N G V + + L G G+GK+T I+ + I+ +G +L DGK
Sbjct: 4 ENVTKRFGRVTALDDISFSVEKGEIFGLLGPNGAGKTTTIRMILGIILPDSGEVLFDGKP 63
Query: 998 ISLIGLHDLRTRLSIIPQDPTMFEGTT-RSNLDPL-------EEHADEQIWEALDKCQLG 1049
+ + R R+ +P++ ++ L L +E A +I E L++ +L
Sbjct: 64 LDI----AARNRIGYLPEERGLYPKMKVIDQLVYLAQLKGLKKEEARRRIDEWLERLELS 119
Query: 1050 DEVRKKKGKLD--SQGRV-----LLKKSKVLVLDEATASVDTATDNQIQQTLRQHFSDC- 1101
+ K+ +L +Q +V ++ ++L+LDE + +D + L+ +
Sbjct: 120 EYANKRVEELSKGNQQKVQFIAAVIHDPELLILDEPFSGLDPVN----VELLKDVIRELA 175
Query: 1102 ----TVVTIAHRITSVLDSA-MVLLLNHG 1125
TV+ H++ V + VLLLN G
Sbjct: 176 RAGKTVILSTHQMELVEELCDRVLLLNKG 204
|
This subgroup is related to the subfamily A transporters involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two integral membranes. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 210 |
| >gnl|CDD|236755 PRK10762, PRK10762, D-ribose transporter ATP binding protein; Provisional | Back alignment and domain information |
|---|
Score = 43.8 bits (104), Expect = 5e-04
Identities = 53/209 (25%), Positives = 91/209 (43%), Gaps = 38/209 (18%)
Query: 376 LRNINLKVFHGMRVAVCGTVGSGKSSCLSCILGGVPKESGIIRLCGTKAYVAQSP----- 430
L L V+ G +A+ G G+GKS+ + + G +++G I G K P
Sbjct: 20 LSGAALNVYPGRVMALVGENGAGKSTMMKVLTGIYTRDAGSILYLG-KEVTFNGPKSSQE 78
Query: 431 -----------WIQSGKIEENILFGKEMDRERYERVL------EACSLKKDLEVLPFGDQ 473
I I ENI G+E R+ R+ EA L L + F
Sbjct: 79 AGIGIIHQELNLIPQLTIAENIFLGREF-VNRFGRIDWKKMYAEADKLLARLNL-RFSSD 136
Query: 474 TIIGERGINLSGGQKQRIQIARPLYQDADIFLLDDPFSPVDDHTGAHLFKFCWV-----S 528
++GE LS G++Q ++IA+ L ++ + ++D+P + D LF+ V S
Sbjct: 137 KLVGE----LSIGEQQMVEIAKVLSFESKVIIMDEPTDALTDTETESLFR---VIRELKS 189
Query: 529 SSKTVIYATHQV-EFLPAADLILVIKDGK 556
+ ++Y +H++ E D + V +DG+
Sbjct: 190 QGRGIVYISHRLKEIFEICDDVTVFRDGQ 218
|
Length = 501 |
| >gnl|CDD|172739 PRK14251, PRK14251, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 43.1 bits (101), Expect = 5e-04
Identities = 55/218 (25%), Positives = 88/218 (40%), Gaps = 51/218 (23%)
Query: 376 LRNINLKVFHGMRVAVCGTVGSGKSSCLSCIL---GGVP--KESGIIRLCGTKAY----- 425
L I+L A+ G G GKS+ L C+ + K +G I+ G Y
Sbjct: 20 LHGISLDFEEKELTALIGPSGCGKSTFLRCLNRMNDDIENIKITGEIKFEGQNIYGSKMD 79
Query: 426 ----------VAQSPWIQSGKIEENILFG--------KEMDRERYERVLEACSLKKDLEV 467
V Q P + +N+ +G KE+ +R E L+ ++ K+
Sbjct: 80 LVELRKEVGMVFQQPTPFPFSVYDNVAYGLKIAGVKDKELIDQRVEESLKQAAIWKE--- 136
Query: 468 LPFGDQTIIGERGINLSGGQKQRIQIARPLYQDADIFLLDDPFSPVDDHTGAHLFKFCWV 527
+ + SGGQ+QRI IAR L + LLD+P S +D + + +
Sbjct: 137 ----TKDNLDRNAQAFSGGQQQRICIARALAVRPKVVLLDEPTSALDPISSSEI------ 186
Query: 528 SSSKTVIYATHQVEFLPAADLILVIKDGKITQAGKYSD 565
+T++ HQ F I+V + + QAG+ SD
Sbjct: 187 --EETLMELKHQYTF------IMVTHN--LQQAGRISD 214
|
Length = 251 |
| >gnl|CDD|215634 PLN03211, PLN03211, ABC transporter G-25; Provisional | Back alignment and domain information |
|---|
Score = 43.7 bits (103), Expect = 5e-04
Identities = 59/212 (27%), Positives = 97/212 (45%), Gaps = 44/212 (20%)
Query: 386 GMRVAVCGTVGSGKSSCLSCILGGVPKESGIIRLCGTKAYVAQSPWIQSGK-----IEEN 440
G +AV G GSGKS+ L+ + G + + GT + P Q K +++
Sbjct: 94 GEILAVLGPSGSGKSTLLNALAGRIQGNN----FTGTILANNRKPTKQILKRTGFVTQDD 149
Query: 441 ILFGKEMDRE---------------RYERVLEACSLKKDLEVLPFGDQTIIGE---RGIN 482
IL+ RE + E++L A S+ +L + + TIIG RGI
Sbjct: 150 ILYPHLTVRETLVFCSLLRLPKSLTKQEKILVAESVISELGLTKCEN-TIIGNSFIRGI- 207
Query: 483 LSGGQKQRIQIARPLYQDADIFLLDDPFSPVDDHTGAHLFKFCWVS---SSKTVIYATHQ 539
SGG+++R+ IA + + + +LD+P S +D T A+ S KT++ + HQ
Sbjct: 208 -SGGERKRVSIAHEMLINPSLLILDEPTSGLDA-TAAYRLVLTLGSLAQKGKTIVTSMHQ 265
Query: 540 VEFLPAA------DLILVIKDGKITQAGKYSD 565
P++ D +LV+ +G+ GK SD
Sbjct: 266 ----PSSRVYQMFDSVLVLSEGRCLFFGKGSD 293
|
Length = 659 |
| >gnl|CDD|213189 cd03222, ABC_RNaseL_inhibitor, ATP-binding cassette domain of RNase L inhibitor | Back alignment and domain information |
|---|
Score = 41.8 bits (98), Expect = 5e-04
Identities = 26/104 (25%), Positives = 42/104 (40%), Gaps = 6/104 (5%)
Query: 481 INLSGGQKQRIQIARPLYQDADIFLLDDPFSPVDDH---TGAHLFKFCWVSSSKTVIYAT 537
I+LSGG+ QR+ IA L ++A +L D+P + +D A + KT +
Sbjct: 70 IDLSGGELQRVAIAAALLRNATFYLFDEPSAYLDIEQRLNAARAIRRLSEEGKKTALVVE 129
Query: 538 HQVEFLP-AADLILVI--KDGKITQAGKYSDILNSGTDFMELVG 578
H + L +D I V + G A + F+
Sbjct: 130 HDLAVLDYLSDRIHVFEGEPGVYGIASQPKGTREGINRFLRGYL 173
|
The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology. Length = 177 |
| >gnl|CDD|213205 cd03238, ABC_UvrA, ATP-binding cassette domain of the excision repair protein UvrA | Back alignment and domain information |
|---|
Score = 41.9 bits (99), Expect = 5e-04
Identities = 42/179 (23%), Positives = 77/179 (43%), Gaps = 34/179 (18%)
Query: 376 LRNINLKVFHGMRVAVCGTVGSGKSSCLSCILGGVPKESGIIRLCGTKAYVAQSPWIQSG 435
L+N+++ + + V V G GSGKS+ ++ L SG RL +++ I
Sbjct: 11 LQNLDVSIPLNVLVVVTGVSGSGKSTLVNEGL----YASGKARLISFLPKFSRNKLIFID 66
Query: 436 KIEENILFGKEMDRERYERVLEACSLKKDLEVLPFGDQTIIGERGINLSGGQKQRIQIAR 495
+++ I G L L +G++ LSGG+ QR+++A
Sbjct: 67 QLQFLIDVG--------------------LGYLT------LGQKLSTLSGGELQRVKLAS 100
Query: 496 PLYQDAD--IFLLDDPFSPVDDHTGAHLFKFC--WVSSSKTVIYATHQVEFLPAADLIL 550
L+ + +F+LD+P + + L + + TVI H ++ L +AD I+
Sbjct: 101 ELFSEPPGTLFILDEPSTGLHQQDINQLLEVIKGLIDLGNTVILIEHNLDVLSSADWII 159
|
Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases. Length = 176 |
| >gnl|CDD|237650 PRK14265, PRK14265, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 42.7 bits (100), Expect = 6e-04
Identities = 39/168 (23%), Positives = 79/168 (47%), Gaps = 24/168 (14%)
Query: 967 GRTGSGKSTLIQTLFRIVE-----STAGHILIDGKDI--SLIGLHDLRTRLSIIPQDPTM 1019
G +G GKSTL++ R+ + G +L ++I S I LR ++ ++ Q P
Sbjct: 53 GPSGCGKSTLLRCFNRMNDLIPGAKVEGRLLYRDRNIYDSQINSVKLRRQVGMVFQRPNP 112
Query: 1020 FEGTTRSNL------DPLEEHADEQIWEALDKCQLGDEVR---KKKGKLDSQG------- 1063
F + N+ + + + DE + ++L + + +EV+ K+KG S G
Sbjct: 113 FPKSIYENIAFAPRANGYKGNLDELVEDSLRRAAIWEEVKDKLKEKGTALSGGQQQRLCI 172
Query: 1064 -RVLLKKSKVLVLDEATASVDTATDNQIQQTLRQHFSDCTVVTIAHRI 1110
R + K VL++DE +++D + Q+++ + T++ + H +
Sbjct: 173 ARAIAMKPDVLLMDEPCSALDPISTRQVEELCLELKEQYTIIMVTHNM 220
|
Length = 274 |
| >gnl|CDD|172751 PRK14263, PRK14263, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 42.7 bits (100), Expect = 6e-04
Identities = 39/171 (22%), Positives = 76/171 (44%), Gaps = 30/171 (17%)
Query: 967 GRTGSGKSTLIQTLFRIVE-----STAGHILIDGKDISLIGLHDL--RTRLSIIPQDPTM 1019
G +G GKST++++L R+ + GH+ G+D+ G+ + R + ++ Q P
Sbjct: 41 GPSGCGKSTVLRSLNRMNDLVKGFRFEGHVHFLGQDVYGKGVDPVVVRRYIGMVFQQPNP 100
Query: 1020 FEGTTRSN------LDPLEEHADEQIWEALDKCQLGDEVRKKKGKLDSQG---------- 1063
F + N L+ + +++ AL L DEV K KL G
Sbjct: 101 FSMSIFDNVAFGLRLNRYKGDLGDRVKHALQGAALWDEV---KDKLKVSGLSLSGGQQQR 157
Query: 1064 ----RVLLKKSKVLVLDEATASVDTATDNQIQQTLRQHFSDCTVVTIAHRI 1110
R + + +VL+LDE +++D ++++ + + D T+ + H +
Sbjct: 158 LCIARAIATEPEVLLLDEPCSALDPIATRRVEELMVELKKDYTIALVTHNM 208
|
Length = 261 |
| >gnl|CDD|223562 COG0488, Uup, ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only] | Back alignment and domain information |
|---|
Score = 43.4 bits (103), Expect = 7e-04
Identities = 41/207 (19%), Positives = 74/207 (35%), Gaps = 35/207 (16%)
Query: 926 PSEPALVIEATKPNNSRPSHGEV-NIRHLQVRYAPNLPLVLR--------------GRTG 970
P E + P + V ++ Y L+ G G
Sbjct: 299 PVEEGKPLAFRFPPPGKRLGKLVLEFENVSKGYDGGRLLLKDLSFRIDRGDRIAIVGPNG 358
Query: 971 SGKSTLIQTLFRIVESTAGHILI-DGKDISLIGLHDLRTRLSIIPQDPTMFEGTTRSNLD 1029
+GKSTL++ L + +G + + + I H R + P T+ E + D
Sbjct: 359 AGKSTLLKLLAGELGPLSGTVKVGETVKIGYFDQH----RDELDPDK-TVLEELSEGFPD 413
Query: 1030 PLEEHADEQIWEALDKCQLGDEVRKKKGKLDSQG--------RVLLKKSKVLVLDEATAS 1081
E+ G++ K G L S G ++LL+ +L+LDE T
Sbjct: 414 GDEQEV-RAYLGRFGFT--GEDQEKPVGVL-SGGEKARLLLAKLLLQPPNLLLLDEPTNH 469
Query: 1082 VDTATDNQIQQTLRQHFSDCTVVTIAH 1108
+D + +++ L + TV+ ++H
Sbjct: 470 LDIESLEALEEALLDF--EGTVLLVSH 494
|
Length = 530 |
| >gnl|CDD|226968 COG4615, PvdE, ABC-type siderophore export system, fused ATPase and permease components [Secondary metabolites biosynthesis, transport, and catabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 43.3 bits (102), Expect = 7e-04
Identities = 69/310 (22%), Positives = 121/310 (39%), Gaps = 44/310 (14%)
Query: 279 SVVTFGSCILLG-IPLESGMILS-------ALTTFKI----LQEPIYYLPESISMMIQAK 326
V + + +LLG I L + LS T + L+ P+ + ++ A+
Sbjct: 234 LAVNWSNIMLLGLIGLVFWLALSLGWASTNVAATIVLVLLFLRTPLLSAVGILPTLLTAQ 293
Query: 327 VPLDRIASFLCLEGLQTDVLEKMPRGNSDTAIEIIDGSFSWDFSSPNPTLRNINLKVFHG 386
V ++IA L + D + T +E+ + F+ + + INL + G
Sbjct: 294 VAFNKIAKL-ELAPYKADFPRPQAFPDWKT-LELRNVRFA--YQDNAFHVGPINLTIKRG 349
Query: 387 MRVAVCGTVGSGKSSCLSCILGGVPKESGIIRLCGTKAYVAQSP----WIQSGKIEENIL 442
V + G GSGKS+ + G +SG I L G A+ + S + L
Sbjct: 350 ELVFLIGGNGSGKSTLAMLLTGLYQPQSGEILLDGKPV-SAEQLEDYRKLFSAVFSDYHL 408
Query: 443 FGKEMDRERY------ERVLEACSLKKDLEVLPFGDQTIIGERGINLSGGQKQRIQIARP 496
F + + E E+ L+ L + D + LS GQK+R+ +
Sbjct: 409 FDQLLGPEGKASPQLIEKWLQRLELAHKTSLN---DGRFSN---LKLSTGQKKRLALLLA 462
Query: 497 LYQDADIFLLD------DP-FSPVDDHTGAHLFKFCWVSSSKTVIYATHQVEFLPAADLI 549
L ++ DI +LD DP F L K KT+ +H + AD +
Sbjct: 463 LLEERDILVLDEWAADQDPAFRREFYQVLLPLLK----EQGKTIFAISHDDHYFIHADRL 518
Query: 550 LVIKDGKITQ 559
L +++G++++
Sbjct: 519 LEMRNGQLSE 528
|
Length = 546 |
| >gnl|CDD|213204 cd03237, ABC_RNaseL_inhibitor_domain2, The ATP-binding cassette domain 2 of RNase L inhibitor | Back alignment and domain information |
|---|
Score = 42.4 bits (100), Expect = 8e-04
Identities = 19/41 (46%), Positives = 26/41 (63%)
Query: 469 PFGDQTIIGERGINLSGGQKQRIQIARPLYQDADIFLLDDP 509
P + I+ LSGG+ QR+ IA L +DADI+LLD+P
Sbjct: 102 PLQIEQILDREVPELSGGELQRVAIAACLSKDADIYLLDEP 142
|
The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology. Length = 246 |
| >gnl|CDD|224166 COG1245, COG1245, Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only] | Back alignment and domain information |
|---|
Score = 43.1 bits (102), Expect = 8e-04
Identities = 50/173 (28%), Positives = 72/173 (41%), Gaps = 54/173 (31%)
Query: 374 PTLRNINLKVFHGMRVAVCGTVGSGKSSCLSCILGG--VP----------KESGIIRLCG 421
PT R G V + G G GKS+ L IL G P + I R G
Sbjct: 95 PTPRP-------GKVVGILGPNGIGKSTALK-ILAGELKPNLGRYEDPPSWDEVIKRFRG 146
Query: 422 T--------------KA-----YVAQSPWIQSGKIEENILFGKEMDRERYERVLEACSLK 462
T +A YV P + GK+ E L K +R +++ V+E L+
Sbjct: 147 TELQNYFKKLYEGELRAVHKPQYVDLIPKVVKGKVGE--LLKKVDERGKFDEVVERLGLE 204
Query: 463 KDLEVLPFGDQTIIGERGIN-LSGGQKQRIQIARPLYQDADIFLLDDPFSPVD 514
L+ R ++ LSGG+ QR+ IA L +DAD++ D+P S +D
Sbjct: 205 NVLD------------RDVSELSGGELQRVAIAAALLRDADVYFFDEPSSYLD 245
|
Length = 591 |
| >gnl|CDD|226905 COG4525, TauB, ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 41.7 bits (98), Expect = 0.001
Identities = 39/194 (20%), Positives = 71/194 (36%), Gaps = 54/194 (27%)
Query: 958 APNLPLVLRGRTGSGKSTLIQTLFRIVESTAGHILIDGKDISLIGLHDLRTRLSIIPQDP 1017
A +V+ G +G GK+TL+ + V + G I ++G+ I G ++ Q+
Sbjct: 29 ASGELVVVLGPSGCGKTTLLNLIAGFVTPSRGSIQLNGRRIEGPG-----AERGVVFQNE 83
Query: 1018 TMFEG-TTRSN---------LDP---------------LEEHADEQIWEALDKCQLGDEV 1052
+ N ++ LE + IW QL +
Sbjct: 84 ALLPWLNVIDNVAFGLQLRGIEKAQRREIAHQMLALVGLEGAEHKYIW------QLSGGM 137
Query: 1053 RKKKGKLDSQGRVLLKKSKVLVLDEATASVDTATDNQIQQTLRQHFSDCTVVTIAHRITS 1112
R++ G R L + ++L+LDE ++D T Q+Q+ L + +
Sbjct: 138 RQRVG----IARALAVEPQLLLLDEPFGALDALTREQMQELL---------LDLWQE--- 181
Query: 1113 VLDSAMVLLLNHGL 1126
VLL+ H +
Sbjct: 182 --TGKQVLLITHDI 193
|
Length = 259 |
| >gnl|CDD|172759 PRK14271, PRK14271, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 42.0 bits (98), Expect = 0.001
Identities = 27/89 (30%), Positives = 48/89 (53%), Gaps = 2/89 (2%)
Query: 483 LSGGQKQRIQIARPLYQDADIFLLDDPFSPVDDHTGAHLFKFCWVSSSK-TVIYATHQV- 540
LSGGQ+Q + +AR L + ++ LLD+P S +D T + +F + + TVI TH +
Sbjct: 164 LSGGQQQLLCLARTLAVNPEVLLLDEPTSALDPTTTEKIEEFIRSLADRLTVIIVTHNLA 223
Query: 541 EFLPAADLILVIKDGKITQAGKYSDILNS 569
+ +D + DG++ + G + +S
Sbjct: 224 QAARISDRAALFFDGRLVEEGPTEQLFSS 252
|
Length = 276 |
| >gnl|CDD|226637 COG4167, SapF, ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 42.1 bits (99), Expect = 0.001
Identities = 47/209 (22%), Positives = 91/209 (43%), Gaps = 32/209 (15%)
Query: 386 GMRVAVCGTVGSGKSSCLSCILGGVPKESGIIR------LCGTKAYVAQ----------- 428
G +A+ G GSGKS+ + G + SG I G ++ ++
Sbjct: 39 GQTLAIIGENGSGKSTLAKMLAGMIEPTSGEILINDHPLHFGDYSFRSKRIRMIFQDPNT 98
Query: 429 --SPWIQSGKI-EENILFGKEMDRE-RYERVLEACSLKKDLEVLPFGDQTIIGERGINLS 484
+P ++ G+I + + +++ E R +++ E + + +LP D L+
Sbjct: 99 SLNPRLRIGQILDFPLRLNTDLEPEQRRKQIFETLRM---VGLLP--DHANYYPH--MLA 151
Query: 485 GGQKQRIQIARPLYQDADIFLLDDPFSPVDDHTGAHLFKFCWVSSSK---TVIYATHQVE 541
GQKQR+ +AR L I + D+ + +D + L K + IY T +
Sbjct: 152 PGQKQRVALARALILRPKIIIADEALASLDMSMRSQLINLMLELQEKQGISYIYVTQHIG 211
Query: 542 FLP-AADLILVIKDGKITQAGKYSDILNS 569
+ +D +LV+ +G++ + G +D+L S
Sbjct: 212 MIKHISDQVLVMHEGEVVERGSTADVLAS 240
|
Length = 267 |
| >gnl|CDD|181906 PRK09493, glnQ, glutamine ABC transporter ATP-binding protein; Reviewed | Back alignment and domain information |
|---|
Score = 42.0 bits (99), Expect = 0.001
Identities = 52/217 (23%), Positives = 95/217 (43%), Gaps = 38/217 (17%)
Query: 964 VLRGRTGSGKSTLIQTLFRIVESTAGHILIDGKDI--SLIGLHDLR-------TRLSIIP 1014
V+ G +GSGKSTL++ + ++ E T+G +++DG + + +R + + P
Sbjct: 31 VIIGPSGSGKSTLLRCINKLEEITSGDLIVDGLKVNDPKVDERLIRQEAGMVFQQFYLFP 90
Query: 1015 Q---------DPTMFEGTTRSNLDPLEEHADEQIWEALDKCQLGDEVRKKKGKLD--SQG 1063
P G ++ E A++Q E L K L + +L Q
Sbjct: 91 HLTALENVMFGPLRVRGASK-------EEAEKQARELLAKVGLAERAHHYPSELSGGQQQ 143
Query: 1064 RV-----LLKKSKVLVLDEATASVDTATDNQIQQTLRQHFSD-CTVVTIAHRITSVLDSA 1117
RV L K K+++ DE T+++D +++ + ++ + T+V + H I A
Sbjct: 144 RVAIARALAVKPKLMLFDEPTSALDPELRHEVLKVMQDLAEEGMTMVIVTHEIGFAEKVA 203
Query: 1118 MVLL-LNHGLIKEYDSPTKLLENKSS----SFAQLVA 1149
L+ ++ G I E P L++N S F Q V+
Sbjct: 204 SRLIFIDKGRIAEDGDPQVLIKNPPSQRLQEFLQHVS 240
|
Length = 240 |
| >gnl|CDD|213184 cd03217, ABC_FeS_Assembly, ABC-type transport system involved in Fe-S cluster assembly, ATPase component | Back alignment and domain information |
|---|
Score = 41.4 bits (98), Expect = 0.001
Identities = 25/69 (36%), Positives = 33/69 (47%), Gaps = 5/69 (7%)
Query: 964 VLRGRTGSGKSTLIQTL--FRIVESTAGHILIDGKDISLIGLHDLRTRLSII--PQDPTM 1019
L G GSGKSTL +T+ E T G IL G+DI+ + + R RL I Q P
Sbjct: 30 ALMGPNGSGKSTLAKTIMGHPKYEVTEGEILFKGEDITDLPPEE-RARLGIFLAFQYPPE 88
Query: 1020 FEGTTRSNL 1028
G ++
Sbjct: 89 IPGVKNADF 97
|
Biosynthesis of iron-sulfur clusters (Fe-S) depends on multi-protein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet. Length = 200 |
| >gnl|CDD|236863 PRK11153, metN, DL-methionine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 42.5 bits (101), Expect = 0.001
Identities = 27/99 (27%), Positives = 44/99 (44%), Gaps = 24/99 (24%)
Query: 482 NLSGGQKQRIQIARPLYQDADIFLLDDPFSPVDDHTGA-------------HLFKFCWVS 528
LSGGQKQR+ IAR L + + L D+ S +D T L
Sbjct: 140 QLSGGQKQRVAIARALASNPKVLLCDEATSALDPATTRSILELLKDINRELGL------- 192
Query: 529 SSKTVIYATHQVEFLPA-ADLILVIKDGKITQAGKYSDI 566
T++ TH+++ + D + VI G++ + G S++
Sbjct: 193 ---TIVLITHEMDVVKRICDRVAVIDAGRLVEQGTVSEV 228
|
Length = 343 |
| >gnl|CDD|172745 PRK14257, PRK14257, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 42.0 bits (98), Expect = 0.001
Identities = 42/170 (24%), Positives = 81/170 (47%), Gaps = 26/170 (15%)
Query: 967 GRTGSGKSTLIQTLFRI---VESTA--GHILIDGKDI--SLIGLHDLRTRLSIIPQDPTM 1019
G +G GKST ++ L ++ +E T+ G I G + I +LRTR+ ++ Q PT
Sbjct: 115 GPSGCGKSTFLRNLNQLNDLIEGTSHEGEIYFLGTNTRSKKISSLELRTRIGMVFQKPTP 174
Query: 1020 FEGTTRSNL--DPLEEHADEQ------IWEALDKCQLGDEVR---KKKGKLDSQG----- 1063
FE + N+ P +++ + ++L L DEV+ K G S G
Sbjct: 175 FEMSIFDNVAYGPRNNGINDRKILEKIVEKSLKSAALWDEVKDDLDKAGNALSGGQQQRL 234
Query: 1064 ---RVLLKKSKVLVLDEATASVDTATDNQIQQTLRQHFSDCTVVTIAHRI 1110
R + + +VL++DE T+++D +I++ + + +++ + H +
Sbjct: 235 CIARAIALEPEVLLMDEPTSALDPIATAKIEELILELKKKYSIIIVTHSM 284
|
Length = 329 |
| >gnl|CDD|214640 smart00382, AAA, ATPases associated with a variety of cellular activities | Back alignment and domain information |
|---|
Score = 40.0 bits (93), Expect = 0.001
Identities = 30/170 (17%), Positives = 50/170 (29%), Gaps = 46/170 (27%)
Query: 389 VAVCGTVGSGKSSCLSCILGGVPKESGIIRLCGTKAYVAQSPWIQSGKIEENILFGKEMD 448
+ + G GSGK++ + + G + I E
Sbjct: 5 ILIVGPPGSGKTTLARALARELGPPGGGV-----------------------IYIDGEDI 41
Query: 449 RERYERVLEACSLKKDLEVLPFGDQTIIGERGINLSGGQKQRIQIARPLYQDADIFLLDD 508
E L I+G + + SG + R+ +A D+ +LD+
Sbjct: 42 LEEVLDQLL---------------LIIVGGKKASGSGELRLRLALALARKLKPDVLILDE 86
Query: 509 PFSPVDDHTGAHLFKFC--------WVSSSKTVIYATHQVEFLPAADLIL 550
S +D A L + TVI T+ + L A L
Sbjct: 87 ITSLLDAEQEALLLLLEELRLLLLLKSEKNLTVILTTNDEKDLGPALLRR 136
|
AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment. Length = 148 |
| >gnl|CDD|224166 COG1245, COG1245, Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only] | Back alignment and domain information |
|---|
Score = 43.1 bits (102), Expect = 0.001
Identities = 16/41 (39%), Positives = 26/41 (63%)
Query: 469 PFGDQTIIGERGINLSGGQKQRIQIARPLYQDADIFLLDDP 509
P + ++ LSGG+ QR+ IA L ++AD++LLD+P
Sbjct: 442 PLNLEDLLERPVDELSGGELQRVAIAAALSREADLYLLDEP 482
|
Length = 591 |
| >gnl|CDD|225265 COG2401, COG2401, ABC-type ATPase fused to a predicted acetyltransferase domain [General function prediction only] | Back alignment and domain information |
|---|
Score = 42.9 bits (101), Expect = 0.001
Identities = 53/207 (25%), Positives = 91/207 (43%), Gaps = 35/207 (16%)
Query: 374 PTLRNINLKVFHGMRVAVCGTVGSGKSSCLSCILGGVPKESGIIRLCGTKAYVAQSPWIQ 433
LRN+NL++ G VAV G G+GK++ L ILG G + Y S ++
Sbjct: 397 YVLRNLNLEIKPGDVVAVVGQSGAGKTTLLRMILGAQKGR-------GEEKYRPDSGKVE 449
Query: 434 SGKIEENILFGKEMDRE-RYERVLEACSLKKDLEVLPFGDQT----IIGERGIN------ 482
K + L E + E +LE L+ GD I+ G++
Sbjct: 450 VPKNTVSALIPGEYEPEFGEVTILE--HLRSKT-----GDLNAAVEILNRAGLSDAVLYR 502
Query: 483 -----LSGGQKQRIQIARPLYQDADIFLLDDPFSPVDDHTGAHLF-KFCWVSSSK--TVI 534
LS GQK+R ++A+ L + ++ L+D+ + +D+ T + K ++ T+I
Sbjct: 503 RKFSELSTGQKERAKLAKLLAERPNVLLIDEFAAHLDELTAVRVARKISELAREAGITLI 562
Query: 535 YATHQVEFLPA--ADLILVIKDGKITQ 559
TH+ E A D ++++ GK+
Sbjct: 563 VVTHRPEVGNALRPDTLILVGYGKVPV 589
|
Length = 593 |
| >gnl|CDD|172760 PRK14272, PRK14272, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 41.9 bits (98), Expect = 0.001
Identities = 52/195 (26%), Positives = 86/195 (44%), Gaps = 37/195 (18%)
Query: 376 LRNINLKVFHGMRVAVCGTVGSGKSSCLSCI-----LGGVPKESGIIRLCGTKAY----- 425
++N+NL V G A+ G G GK++ L I L + +G I L G Y
Sbjct: 20 VKNVNLDVQRGTVNALIGPSGCGKTTFLRAINRMHDLTPGARVTGRILLDGQDIYGPRVD 79
Query: 426 ----------VAQSP-WIQSGKIEENILFGKEM----DRERY----ERVLEACSLKKDLE 466
V Q P + + +N++ G ++ DR+ ER L +L +++
Sbjct: 80 PVAMRRRVGMVFQKPNPFPTMSVFDNVVAGLKLAGIRDRDHLMEVAERSLRGAALWDEVK 139
Query: 467 VLPFGDQTIIGERGINLSGGQKQRIQIARPLYQDADIFLLDDPFSPVDDHTGAHLFKFCW 526
D+ + LSGGQ+QR+ IAR L + +I L+D+P S +D + A +
Sbjct: 140 -----DR--LKTPATGLSGGQQQRLCIARALAVEPEILLMDEPTSALDPASTARIEDLMT 192
Query: 527 -VSSSKTVIYATHQV 540
+ T+I TH +
Sbjct: 193 DLKKVTTIIIVTHNM 207
|
Length = 252 |
| >gnl|CDD|172760 PRK14272, PRK14272, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 41.5 bits (97), Expect = 0.001
Identities = 43/190 (22%), Positives = 83/190 (43%), Gaps = 31/190 (16%)
Query: 950 IRHLQVRYAPNLPLVLRGRTGSGKSTLIQTLFRIVEST-----AGHILIDGKDISLIGLH 1004
++++ + L G +G GK+T ++ + R+ + T G IL+DG+DI +
Sbjct: 20 VKNVNLDVQRGTVNALIGPSGCGKTTFLRAINRMHDLTPGARVTGRILLDGQDIYGPRVD 79
Query: 1005 D--LRTRLSIIPQDPTMFEGTTRSNLDPL-----------EEHADEQIWEALDKCQLGDE 1051
+R R+ ++ Q P F T S D + +H E +L L DE
Sbjct: 80 PVAMRRRVGMVFQKPNPF--PTMSVFDNVVAGLKLAGIRDRDHLMEVAERSLRGAALWDE 137
Query: 1052 VRKK-----KGKLDSQ------GRVLLKKSKVLVLDEATASVDTATDNQIQQTLRQHFSD 1100
V+ + G Q R L + ++L++DE T+++D A+ +I+ +
Sbjct: 138 VKDRLKTPATGLSGGQQQRLCIARALAVEPEILLMDEPTSALDPASTARIEDLMTDLKKV 197
Query: 1101 CTVVTIAHRI 1110
T++ + H +
Sbjct: 198 TTIIIVTHNM 207
|
Length = 252 |
| >gnl|CDD|223473 COG0396, sufC, Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 41.8 bits (99), Expect = 0.001
Identities = 45/166 (27%), Positives = 73/166 (43%), Gaps = 36/166 (21%)
Query: 376 LRNINLKVFHGMRVAVCGTVGSGKSSCLSCILGGVPK---ESGIIRLCGT---------K 423
L+ +NL V G A+ G GSGKS+ L+ + G PK G I G +
Sbjct: 20 LKGVNLTVKEGEVHAIMGPNGSGKST-LAYTIMGHPKYEVTEGEILFDGEDILELSPDER 78
Query: 424 A----YVA-QSPWIQSG-------KIEENILFG-KEMDRERYERVLEACSLKKDLEVLPF 470
A ++A Q P G + N G + + E + + E E+L
Sbjct: 79 ARAGIFLAFQYPVEIPGVTNSDFLRAAMNARRGARGILPEFIKELKEK------AELLGL 132
Query: 471 GDQTIIGERGIN--LSGGQKQRIQIARPLYQDADIFLLDDPFSPVD 514
++ + ER +N SGG+K+R +I + L + + +LD+P S +D
Sbjct: 133 DEEFL--ERYVNEGFSGGEKKRNEILQLLLLEPKLAILDEPDSGLD 176
|
Length = 251 |
| >gnl|CDD|184037 PRK13409, PRK13409, putative ATPase RIL; Provisional | Back alignment and domain information |
|---|
Score = 42.5 bits (101), Expect = 0.001
Identities = 16/28 (57%), Positives = 23/28 (82%)
Query: 482 NLSGGQKQRIQIARPLYQDADIFLLDDP 509
+LSGG+ QR+ IA L +DAD++LLD+P
Sbjct: 453 DLSGGELQRVAIAACLSRDADLYLLDEP 480
|
Length = 590 |
| >gnl|CDD|215558 PLN03073, PLN03073, ABC transporter F family; Provisional | Back alignment and domain information |
|---|
Score = 42.5 bits (100), Expect = 0.001
Identities = 25/64 (39%), Positives = 35/64 (54%), Gaps = 9/64 (14%)
Query: 484 SGGQKQRIQIARPLYQDADIFLLDDPFSPVDDHT----GAHLFKFCWVSSSKTVIYATHQ 539
SGG + RI +AR L+ + D+ LLD+P + +D H +L K W KT I +H
Sbjct: 346 SGGWRMRIALARALFIEPDLLLLDEPTNHLDLHAVLWLETYLLK--W---PKTFIVVSHA 400
Query: 540 VEFL 543
EFL
Sbjct: 401 REFL 404
|
Length = 718 |
| >gnl|CDD|182980 PRK11124, artP, arginine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 41.5 bits (98), Expect = 0.001
Identities = 27/87 (31%), Positives = 44/87 (50%), Gaps = 13/87 (14%)
Query: 483 LSGGQKQRIQIARPLYQDADIFLLDDPFSPVDDHTGAHLFKFCWVSSSK-------TVIY 535
LSGGQ+QR+ IAR L + + L D+P + +D A + VS + T +
Sbjct: 142 LSGGQQQRVAIARALMMEPQVLLFDEPTAALDPEITAQI-----VSIIRELAETGITQVI 196
Query: 536 ATHQVEFL-PAADLILVIKDGKITQAG 561
TH+VE A ++ +++G I + G
Sbjct: 197 VTHEVEVARKTASRVVYMENGHIVEQG 223
|
Length = 242 |
| >gnl|CDD|226628 COG4148, ModC, ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 41.2 bits (97), Expect = 0.002
Identities = 51/215 (23%), Positives = 88/215 (40%), Gaps = 36/215 (16%)
Query: 947 EVNIRH----LQVRYAPNLPLV----LRGRTGSGKSTLIQTLFRIVESTAGHILIDGKDI 998
E+N R + LP L G +GSGK++LI + + G I ++G+
Sbjct: 3 ELNFRQRLGNFALDANFTLPARGITALFGPSGSGKTSLINMIAGLTRPDEGRIELNGRV- 61
Query: 999 SLIGLHDLRTRLSIIP---------QDPTMFEG-TTRSNLDPLEEHAD-EQIWEALDKCQ 1047
L D + + P QD +F T R NL + Q + +
Sbjct: 62 ----LVDAEKGIFLPPEKRRIGYVFQDARLFPHYTVRGNLRYGMWKSMRAQFDQLVALLG 117
Query: 1048 LGDEVRKKKGKL---DSQ----GRVLLKKSKVLVLDEATASVDTATDNQIQ---QTLRQH 1097
+ + + G L + Q GR LL ++L++DE AS+D +I + LR
Sbjct: 118 IEHLLDRYPGTLSGGEKQRVAIGRALLTAPELLLMDEPLASLDLPRKREILPYLERLRDE 177
Query: 1098 FSDCTVVTIAHRITSVLDSA-MVLLLNHGLIKEYD 1131
+ ++ ++H + VL A V++L +G +K
Sbjct: 178 I-NIPILYVSHSLDEVLRLADRVVVLENGKVKASG 211
|
Length = 352 |
| >gnl|CDD|132027 TIGR02982, heterocyst_DevA, ABC exporter ATP-binding subunit, DevA family | Back alignment and domain information |
|---|
Score = 40.4 bits (95), Expect = 0.002
Identities = 47/179 (26%), Positives = 82/179 (45%), Gaps = 31/179 (17%)
Query: 964 VLRGRTGSGKSTLIQTL---FRIVESTAGHILIDGKDISLIG---LHDLRTRLSIIPQDP 1017
+L G +GSGK+TL+ TL R V+ G + + G+++ L LR + I Q
Sbjct: 35 ILTGPSGSGKTTLL-TLIGGLRSVQE--GSLKVLGQELYGASEKELVQLRRNIGYIFQAH 91
Query: 1018 TMFEG-TTRSNLD-PLEEHADEQIWEALDKCQ-------LGDEVRKKKGKLDSQG----- 1063
+ T R N+ LE + EA ++ + LGD + L S G
Sbjct: 92 NLLGFLTARQNVQMALELQPNLSYQEARERARAMLEAVGLGDHLDYYPHNL-SGGQKQRV 150
Query: 1064 ---RVLLKKSKVLVLDEATASVDTATDNQIQQTLRQ--HFSDCTVVTIAH--RITSVLD 1115
R L+ + K+++ DE TA++D+ + + + +++ CT++ + H RI V D
Sbjct: 151 AIARALVHRPKLVLADEPTAALDSKSGRDVVELMQKLAREQGCTILIVTHDNRILDVAD 209
|
Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The DevBCA proteins are thought export of either heterocyst-specific glycolipids or an enzyme essential for formation of the laminated layer found in heterocysts. Length = 220 |
| >gnl|CDD|172734 PRK14246, PRK14246, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 40.8 bits (95), Expect = 0.002
Identities = 24/89 (26%), Positives = 46/89 (51%), Gaps = 2/89 (2%)
Query: 483 LSGGQKQRIQIARPLYQDADIFLLDDPFSPVDDHTGAHLFKFCW-VSSSKTVIYATHQVE 541
LSGGQ+QR+ IAR L + L+D+P S +D + K + + ++ +H +
Sbjct: 154 LSGGQQQRLTIARALALKPKVLLMDEPTSMIDIVNSQAIEKLITELKNEIAIVIVSHNPQ 213
Query: 542 FLP-AADLILVIKDGKITQAGKYSDILNS 569
+ AD + + +G++ + G ++I S
Sbjct: 214 QVARVADYVAFLYNGELVEWGSSNEIFTS 242
|
Length = 257 |
| >gnl|CDD|184204 PRK13645, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 41.1 bits (96), Expect = 0.002
Identities = 46/199 (23%), Positives = 86/199 (43%), Gaps = 27/199 (13%)
Query: 967 GRTGSGKSTLIQTLFRIVESTAGHILIDGKDI-----SLIGLHDLRTRLSIIPQDP--TM 1019
G TGSGKST+IQ ++ S G ++ I + + LR + ++ Q P +
Sbjct: 44 GTTGSGKSTMIQLTNGLIISETGQTIVGDYAIPANLKKIKEVKRLRKEIGLVFQFPEYQL 103
Query: 1020 FEGTTRS-------NLDPLEEHADEQIWEALDKCQLGDEVRKKKGKLDSQGR-------- 1064
F+ T NL ++ A +++ E L QL ++ K+ S G+
Sbjct: 104 FQETIEKDIAFGPVNLGENKQEAYKKVPELLKLVQLPEDYVKRSPFELSGGQKRRVALAG 163
Query: 1065 VLLKKSKVLVLDEATASVDTATDN---QIQQTLRQHFSDCTVVTIAHRITSVLDSA-MVL 1120
++ LVLDE T +D + + + L + + ++ + H + VL A V+
Sbjct: 164 IIAMDGNTLVLDEPTGGLDPKGEEDFINLFERLNKEYKK-RIIMVTHNMDQVLRIADEVI 222
Query: 1121 LLNHGLIKEYDSPTKLLEN 1139
+++ G + SP ++ N
Sbjct: 223 VMHEGKVISIGSPFEIFSN 241
|
Length = 289 |
| >gnl|CDD|226641 COG4172, COG4172, ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 41.5 bits (98), Expect = 0.002
Identities = 54/231 (23%), Positives = 90/231 (38%), Gaps = 57/231 (24%)
Query: 953 LQVRYAPNLPLVLRGRTGSGKSTLIQTLFRIVESTA-----GHILIDGKDI---SLIGLH 1004
+ L LV G +GSGKS ++ ++ S A G IL DG+D+ S L
Sbjct: 31 FDIEAGETLALV--GESGSGKSVTALSILGLLPSPAAAHPSGSILFDGEDLLAASERQLR 88
Query: 1005 DLR-TRLSIIPQDPTMFEGTTRSNLDPL------------------EEHADEQIWEALDK 1045
+R ++ +I Q+P M ++L+PL A + E L+
Sbjct: 89 GVRGNKIGMIFQEP-M------TSLNPLHTIGKQLAEVLRLHRGLSRAAARARALELLEL 141
Query: 1046 CQLGDEVRKKKGKLDS---------QGRV-----LLKKSKVLVLDEATASVDTATDNQIQ 1091
+ + + +LD+ + RV L + +L+ DE T ++D QI
Sbjct: 142 VGI----PEPEKRLDAYPHELSGGQRQRVMIAMALANEPDLLIADEPTTALDVTVQAQIL 197
Query: 1092 QTLR--QHFSDCTVVTIAHRITSVLDSA-MVLLLNHGLIKEYDSPTKLLEN 1139
L+ Q ++ I H + V A V ++ HG I E + L
Sbjct: 198 DLLKELQAELGMAILFITHDLGIVRKFADRVYVMQHGEIVETGTTETLFAA 248
|
Length = 534 |
| >gnl|CDD|237645 PRK14235, PRK14235, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 41.3 bits (97), Expect = 0.002
Identities = 45/175 (25%), Positives = 79/175 (45%), Gaps = 39/175 (22%)
Query: 967 GRTGSGKSTLIQTLFRI---VES--TAGHILIDGKDI--SLIGLHDLRTRLSIIPQDPTM 1019
G +G GKST ++ L R+ ++ G I +DG+DI + + +LR R+ ++ Q P
Sbjct: 52 GPSGCGKSTFLRCLNRMNDTIDGCRVTGKITLDGEDIYDPRLDVVELRARVGMVFQKPNP 111
Query: 1020 FEGTTRSN---------LDPLEEHADEQIWEALDKCQLGDEVRKKKGKLDSQG------- 1063
F + N L + DE + +L K L +EV K +L G
Sbjct: 112 FPKSIYENVAYGPRIHGLARSKAELDEIVETSLRKAGLWEEV---KDRLHEPGTGLSGGQ 168
Query: 1064 -------RVLLKKSKVLVLDEATASVD---TATDNQIQQTLRQHFSDCTVVTIAH 1108
R + +V+++DE +++D TA ++ LRQ++ T+V + H
Sbjct: 169 QQRLCIARAIAVSPEVILMDEPCSALDPIATAKVEELIDELRQNY---TIVIVTH 220
|
Length = 267 |
| >gnl|CDD|132561 TIGR03522, GldA_ABC_ATP, gliding motility-associated ABC transporter ATP-binding subunit GldA | Back alignment and domain information |
|---|
Score = 41.7 bits (98), Expect = 0.002
Identities = 44/180 (24%), Positives = 86/180 (47%), Gaps = 23/180 (12%)
Query: 967 GRTGSGKSTLIQTLFRIVESTAGHILIDGKDISLIGLHDLRTRLSIIPQ-DPTMFEGTTR 1025
G G+GKST ++ + + +G + + G+D+ L +++ + +P+ +P + R
Sbjct: 35 GPNGAGKSTTMKIITGYLPPDSGSVQVCGEDV-LQNPKEVQRNIGYLPEHNPLYLDMYVR 93
Query: 1026 SNLD------PLEEHA-DEQIWEALDKCQLGDEVRKKKGKLDSQG---RVLLKKS----- 1070
L ++ +++ E ++ L E KK G+L S+G RV L ++
Sbjct: 94 EYLQFIAGIYGMKGQLLKQRVEEMIELVGLRPEQHKKIGQL-SKGYRQRVGLAQALIHDP 152
Query: 1071 KVLVLDEATASVDTATDNQIQQTLRQHFSDCTVVTIAHRITSVLDSAM---VLLLNHGLI 1127
KVL+LDE T +D +I+ ++ D T++ H + V A+ V+++N G I
Sbjct: 153 KVLILDEPTTGLDPNQLVEIRNVIKNIGKDKTIILSTHIMQEV--EAICDRVIIINKGKI 210
|
Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility. Length = 301 |
| >gnl|CDD|184587 PRK14241, PRK14241, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 41.2 bits (97), Expect = 0.002
Identities = 17/35 (48%), Positives = 25/35 (71%)
Query: 480 GINLSGGQKQRIQIARPLYQDADIFLLDDPFSPVD 514
G LSGGQ+QR+ IAR + + D+ L+D+P S +D
Sbjct: 146 GGGLSGGQQQRLCIARAIAVEPDVLLMDEPCSALD 180
|
Length = 258 |
| >gnl|CDD|236898 PRK11308, dppF, dipeptide transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 41.5 bits (98), Expect = 0.002
Identities = 17/31 (54%), Positives = 22/31 (70%)
Query: 484 SGGQKQRIQIARPLYQDADIFLLDDPFSPVD 514
SGGQ+QRI IAR L D D+ + D+P S +D
Sbjct: 156 SGGQRQRIAIARALMLDPDVVVADEPVSALD 186
|
Length = 327 |
| >gnl|CDD|236898 PRK11308, dppF, dipeptide transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 41.1 bits (97), Expect = 0.002
Identities = 20/62 (32%), Positives = 29/62 (46%), Gaps = 10/62 (16%)
Query: 966 RGRT-------GSGKSTLIQTLFRIVESTAGHILIDGKDI---SLIGLHDLRTRLSIIPQ 1015
RG+T G GKSTL + L I T G + G+D+ LR ++ I+ Q
Sbjct: 40 RGKTLAVVGESGCGKSTLARLLTMIETPTGGELYYQGQDLLKADPEAQKLLRQKIQIVFQ 99
Query: 1016 DP 1017
+P
Sbjct: 100 NP 101
|
Length = 327 |
| >gnl|CDD|237457 PRK13647, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 40.5 bits (95), Expect = 0.003
Identities = 51/205 (24%), Positives = 86/205 (41%), Gaps = 24/205 (11%)
Query: 964 VLRGRTGSGKSTLIQTLFRIVESTAGHILIDGKDISLIGLHDLRTRLSIIPQDP------ 1017
L G G+GKSTL+ L I G + + G++++ +R+++ ++ QDP
Sbjct: 35 ALLGPNGAGKSTLLLHLNGIYLPQRGRVKVMGREVNAENEKWVRSKVGLVFQDPDDQVFS 94
Query: 1018 -TMFE----GTTRSNLDPLEEHADEQIWEALDKCQLGDEVRKKKGKLDSQGR-------- 1064
T+++ G LD E + ++ EAL ++ D R K S G+
Sbjct: 95 STVWDDVAFGPVNMGLDKDE--VERRVEEALKAVRMWD-FRDKPPYHLSYGQKKRVAIAG 151
Query: 1065 VLLKKSKVLVLDEATASVDTATDNQIQQTL-RQHFSDCTVVTIAHRITSVLDSA-MVLLL 1122
VL V+VLDE A +D + + L R H TV+ H + + A V++L
Sbjct: 152 VLAMDPDVIVLDEPMAYLDPRGQETLMEILDRLHNQGKTVIVATHDVDLAAEWADQVIVL 211
Query: 1123 NHGLIKEYDSPTKLLENKSSSFAQL 1147
G + + L + A L
Sbjct: 212 KEGRVLAEGDKSLLTDEDIVEQAGL 236
|
Length = 274 |
| >gnl|CDD|226963 COG4604, CeuD, ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 40.4 bits (95), Expect = 0.003
Identities = 18/50 (36%), Positives = 32/50 (64%)
Query: 967 GRTGSGKSTLIQTLFRIVESTAGHILIDGKDISLIGLHDLRTRLSIIPQD 1016
G G+GKSTL+ + R+++ +G I IDG +++ +L +LSI+ Q+
Sbjct: 34 GPNGAGKSTLLSMMSRLLKKDSGEITIDGLELTSTPSKELAKKLSILKQE 83
|
Length = 252 |
| >gnl|CDD|182880 PRK10982, PRK10982, galactose/methyl galaxtoside transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 41.3 bits (97), Expect = 0.003
Identities = 48/216 (22%), Positives = 89/216 (41%), Gaps = 36/216 (16%)
Query: 373 NPTLRNINLKVFHGMRVAVCGTVGSGKSSCLSCILGGVPKESGIIRLCGTKAYVAQSPW- 431
P++R+++ + G + + G VG+ ++ + + G K +G I L G K +
Sbjct: 261 QPSIRDVSFDLHKGEILGIAGLVGAKRTDIVETLFGIREKSAGTITLHG-KKINNHNANE 319
Query: 432 -IQSG-----------------KIEENILFGKEMDRERYE-RVLEACSLKKD-------L 465
I G I N L + + + +L+ +K D +
Sbjct: 320 AINHGFALVTEERRSTGIYAYLDIGFNSLISN-IRNYKNKVGLLDNSRMKSDTQWVIDSM 378
Query: 466 EVLPFGDQTIIGERGINLSGGQKQRIQIARPLYQDADIFLLDDPFSPVDDHTGAHLFKFC 525
V G +T IG +LSGG +Q++ I R L +I +LD+P +D +++
Sbjct: 379 RVKTPGHRTQIG----SLSGGNQQKVIIGRWLLTQPEILMLDEPTRGIDVGAKFEIYQLI 434
Query: 526 WVSSSK---TVIYATHQVEFLPAADLILVIKDGKIT 558
+ K +I ++ E L D ILV+ +G +
Sbjct: 435 AELAKKDKGIIIISSEMPELLGITDRILVMSNGLVA 470
|
Length = 491 |
| >gnl|CDD|182561 PRK10575, PRK10575, iron-hydroxamate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 40.5 bits (95), Expect = 0.003
Identities = 43/152 (28%), Positives = 62/152 (40%), Gaps = 39/152 (25%)
Query: 391 VCGTVG---SGKSSCLSCILGGVPKESGIIRLCGT-------KAY---VA----QSPWIQ 433
V G +G SGKS+ L + P G I L KA+ VA Q P +
Sbjct: 39 VTGLIGHNGSGKSTLLKMLGRHQPPSEGEILLDAQPLESWSSKAFARKVAYLPQQLPAAE 98
Query: 434 SGKIEENILFGK-----------EMDRERYERVLEACSLKKDLEVLPFGDQTIIGERGIN 482
+ E + G+ DRE+ E + LK P + + +
Sbjct: 99 GMTVRELVAIGRYPWHGALGRFGAADREKVEEAISLVGLK------PLAHRLVD-----S 147
Query: 483 LSGGQKQRIQIARPLYQDADIFLLDDPFSPVD 514
LSGG++QR IA + QD+ LLD+P S +D
Sbjct: 148 LSGGERQRAWIAMLVAQDSRCLLLDEPTSALD 179
|
Length = 265 |
| >gnl|CDD|182336 PRK10253, PRK10253, iron-enterobactin transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 40.4 bits (94), Expect = 0.003
Identities = 18/52 (34%), Positives = 31/52 (59%)
Query: 967 GRTGSGKSTLIQTLFRIVESTAGHILIDGKDISLIGLHDLRTRLSIIPQDPT 1018
G G GKSTL++TL R++ GH+ +DG+ I ++ R+ ++ Q+ T
Sbjct: 40 GPNGCGKSTLLRTLSRLMTPAHGHVWLDGEHIQHYASKEVARRIGLLAQNAT 91
|
Length = 265 |
| >gnl|CDD|237647 PRK14248, PRK14248, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 39.9 bits (93), Expect = 0.004
Identities = 17/37 (45%), Positives = 24/37 (64%)
Query: 478 ERGINLSGGQKQRIQIARPLYQDADIFLLDDPFSPVD 514
++LSGGQ+QR+ IAR L + LLD+P S +D
Sbjct: 160 SSALSLSGGQQQRLCIARTLAMKPAVLLLDEPASALD 196
|
Length = 268 |
| >gnl|CDD|183226 PRK11607, potG, putrescine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 40.6 bits (95), Expect = 0.004
Identities = 52/218 (23%), Positives = 100/218 (45%), Gaps = 43/218 (19%)
Query: 965 LRGRTGSGKSTLIQTLFRIVESTAGHILIDGKDISLIGLHDLRTRLSIIPQDPTMFEGTT 1024
L G +G GKSTL++ L + TAG I++DG D+S + + + ++++ Q +F T
Sbjct: 50 LLGASGCGKSTLLRMLAGFEQPTAGQIMLDGVDLSHVPPY--QRPINMMFQSYALFPHMT 107
Query: 1025 ---------RSNLDPLEEHADEQIWEALDKCQLGDEVRKKKGKLD-------SQGRVLLK 1068
+ + P E A ++ E L + + ++K +L + R L K
Sbjct: 108 VEQNIAFGLKQDKLPKAEIAS-RVNEMLGLVHMQEFAKRKPHQLSGGQRQRVALARSLAK 166
Query: 1069 KSKVLVLDEATASVDTATDNQIQQTLRQHFSDCTVVTIAHRI--TSVL-----DSAMVL- 1120
+ K+L+LDE ++D +++Q VV I R+ T V+ + AM +
Sbjct: 167 RPKLLLLDEPMGALDKKLRDRMQL---------EVVDILERVGVTCVMVTHDQEEAMTMA 217
Query: 1121 ----LLNHGLIKEYDSPTKLLENKSSSFAQLVAEYTSS 1154
++N G + P ++ E+ ++ ++ AE+ S
Sbjct: 218 GRIAIMNRGKFVQIGEPEEIYEHPTTRYS---AEFIGS 252
|
Length = 377 |
| >gnl|CDD|172762 PRK14274, PRK14274, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 40.3 bits (94), Expect = 0.004
Identities = 46/215 (21%), Positives = 88/215 (40%), Gaps = 41/215 (19%)
Query: 931 LVIEATKPNNSRPSHGEVNIRHLQVRYAPNLPLVLR--------GRTGSGKSTLIQTLFR 982
+ EA +G +N+ + Q N+ L + G +G GKST I+TL
Sbjct: 2 IATEAVMKQEVYQING-MNLWYGQHHALKNINLSIPENEVTAIIGPSGCGKSTFIKTLNL 60
Query: 983 IVEST-----AGHILIDGKDI--SLIGLHDLRTRLSIIPQDPTMFEGTTRSNL------- 1028
+++ G + +G +I + L +LR + ++ Q F + N+
Sbjct: 61 MIQMVPNVKLTGEMNYNGSNILKGKVDLVELRKNIGMVFQKGNPFPQSIFDNVAYGPRIH 120
Query: 1029 -DPLEEHADEQIWEALDKCQLGDEVRKKKGKLDSQG--------------RVLLKKSKVL 1073
++ E + ++L L DEV K +L +Q R L VL
Sbjct: 121 GTKNKKKLQEIVEKSLKDVALWDEV---KDRLHTQALSLSGGQQQRLCIARALATNPDVL 177
Query: 1074 VLDEATASVDTATDNQIQQTLRQHFSDCTVVTIAH 1108
++DE T+++D + +I++ + + T+V + H
Sbjct: 178 LMDEPTSALDPVSTRKIEELILKLKEKYTIVIVTH 212
|
Length = 259 |
| >gnl|CDD|172747 PRK14259, PRK14259, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 40.2 bits (94), Expect = 0.004
Identities = 40/169 (23%), Positives = 80/169 (47%), Gaps = 30/169 (17%)
Query: 967 GRTGSGKSTLIQTLFRIVE-----STAGHILIDGKDI--SLIGLHDLRTRLSIIPQDPTM 1019
G +G GKST++++L R+ + S G +L DG D+ + ++R R+ ++ Q P
Sbjct: 46 GPSGCGKSTVLRSLNRMNDLIEGCSLKGRVLFDGTDLYDPRVDPVEVRRRIGMVFQQPNP 105
Query: 1020 FEGTTRSNL------DPLEEHADEQIWEALDKCQLGDEVRKKKGKLDSQG---------- 1063
F + N+ + DE + +L K + DE K KL+ G
Sbjct: 106 FPKSIYENIAFGARINGYTGDMDELVERSLRKAAVWDEC---KDKLNESGYSLSGGQQQR 162
Query: 1064 ----RVLLKKSKVLVLDEATASVDTATDNQIQQTLRQHFSDCTVVTIAH 1108
R + + +V+++DE +++D + +I++T+ + + T+V + H
Sbjct: 163 LCIARTIAIEPEVILMDEPCSALDPISTLKIEETMHELKKNFTIVIVTH 211
|
Length = 269 |
| >gnl|CDD|237422 PRK13548, hmuV, hemin importer ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 40.1 bits (95), Expect = 0.004
Identities = 14/57 (24%), Positives = 33/57 (57%)
Query: 963 LVLRGRTGSGKSTLIQTLFRIVESTAGHILIDGKDISLIGLHDLRTRLSIIPQDPTM 1019
+ + G G+GKSTL++ L + +G + ++G+ ++ +L R +++PQ ++
Sbjct: 31 VAILGPNGAGKSTLLRALSGELSPDSGEVRLNGRPLADWSPAELARRRAVLPQHSSL 87
|
Length = 258 |
| >gnl|CDD|183244 PRK11629, lolD, lipoprotein transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 39.8 bits (93), Expect = 0.004
Identities = 53/217 (24%), Positives = 83/217 (38%), Gaps = 49/217 (22%)
Query: 376 LRNINLKVFHGMRVAVCGTVGSGKSSCLSCILGGVPK-ESGIIRLCGTKAYVAQSPWIQS 434
L N++ + G +A+ G+ GSGKS+ L +LGG+ SG + G S +
Sbjct: 25 LHNVSFSIGEGEMMAIVGSSGSGKSTLLH-LLGGLDTPTSGDVIFNGQPMSKLSS----A 79
Query: 435 GKIE----------------------ENI----LFGKEMDRERYERVLE---ACSLKKDL 465
K E EN+ L GK+ E R LE A L+
Sbjct: 80 AKAELRNQKLGFIYQFHHLLPDFTALENVAMPLLIGKKKPAEINSRALEMLAAVGLEHRA 139
Query: 466 EVLPFGDQTIIGERGINLSGGQKQRIQIARPLYQDADIFLLDDPFSPVDDHTGAHLFKFC 525
R LSGG++QR+ IAR L + + L D+P +D +F+
Sbjct: 140 N-----------HRPSELSGGERQRVAIARALVNNPRLVLADEPTGNLDARNADSIFQLL 188
Query: 526 W---VSSSKTVIYATHQVEFLPAADLILVIKDGKITQ 559
+ TH ++ L ++DG++T
Sbjct: 189 GELNRLQGTAFLVVTHDLQLAKRMSRQLEMRDGRLTA 225
|
Length = 233 |
| >gnl|CDD|221970 pfam13191, AAA_16, AAA ATPase domain | Back alignment and domain information |
|---|
Score = 38.7 bits (90), Expect = 0.004
Identities = 26/136 (19%), Positives = 51/136 (37%), Gaps = 17/136 (12%)
Query: 963 LVLRGRTGSGKSTLIQTLFRIVESTAGHILIDGKDISLIGLHDLRTRLSIIPQDPTMFEG 1022
++L G +G+GK++L++ L + AG ++ LR L
Sbjct: 27 VLLTGPSGTGKTSLLRELLEGLLVAAGKCDQAERNPPYAFSQALRELL------------ 74
Query: 1023 TTRSNLDPLEEHADEQIWEALDKCQLGDEVRKKKGKLDSQGRVLLKKSK-VLVLDEATAS 1081
L + EAL + + + ++ R+L + VLVLD+ +
Sbjct: 75 ---RQLLRELAAELLLLREALLAALGAELIEGLQDLVELLERLLARARPLVLVLDDLQWA 131
Query: 1082 VDTATDNQIQQTLRQH 1097
D + + + LR+
Sbjct: 132 -DEESLDLLAALLRRL 146
|
This family of domains contain a P-loop motif that is characteristic of the AAA superfamily. Length = 154 |
| >gnl|CDD|185037 PRK15079, PRK15079, oligopeptide ABC transporter ATP-binding protein OppF; Provisional | Back alignment and domain information |
|---|
Score = 40.5 bits (95), Expect = 0.004
Identities = 48/195 (24%), Positives = 86/195 (44%), Gaps = 46/195 (23%)
Query: 967 GRTGSGKSTLIQTLFRIVESTAGHILIDGKDISLIGL-----HDLRTRLSIIPQD----- 1016
G +G GKST + + +V++T G + GKD L+G+ +R+ + +I QD
Sbjct: 54 GESGCGKSTFARAIIGLVKATDGEVAWLGKD--LLGMKDDEWRAVRSDIQMIFQDPLASL 111
Query: 1017 -PTMFEGTTRSNLDPLEEHADEQIWEALDKCQLGDEVR---KKKGKLD----------SQ 1062
P M G + +PL + + L + ++ D V+ K G L S
Sbjct: 112 NPRMTIGEIIA--EPLRTYHPK-----LSRQEVKDRVKAMMLKVGLLPNLINRYPHEFSG 164
Query: 1063 G--------RVLLKKSKVLVLDEATASVDTATDNQIQQTLR--QHFSDCTVVTIAHRITS 1112
G R L+ + K+++ DE +++D + Q+ L+ Q +++ IAH +
Sbjct: 165 GQCQRIGIARALILEPKLIICDEPVSALDVSIQAQVVNLLQQLQREMGLSLIFIAHDLAV 224
Query: 1113 V---LDSAMVLLLNH 1124
V D +V+ L H
Sbjct: 225 VKHISDRVLVMYLGH 239
|
Length = 331 |
Conserved Domains Detected by HHsearch 
Original result of HHsearch against CDD database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 1156 | |||
| KOG0054 | 1381 | consensus Multidrug resistance-associated protein/ | 100.0 | |
| PLN03130 | 1622 | ABC transporter C family member; Provisional | 100.0 | |
| PLN03232 | 1495 | ABC transporter C family member; Provisional | 100.0 | |
| TIGR00957 | 1522 | MRP_assoc_pro multi drug resistance-associated pro | 100.0 | |
| TIGR01271 | 1490 | CFTR_protein cystic fibrosis transmembrane conduct | 100.0 | |
| PTZ00243 | 1560 | ABC transporter; Provisional | 100.0 | |
| KOG0055 | 1228 | consensus Multidrug/pheromone exporter, ABC superf | 100.0 | |
| PTZ00265 | 1466 | multidrug resistance protein (mdr1); Provisional | 100.0 | |
| KOG0058 | 716 | consensus Peptide exporter, ABC superfamily [Intra | 100.0 | |
| KOG0058 | 716 | consensus Peptide exporter, ABC superfamily [Intra | 100.0 | |
| COG2274 | 709 | SunT ABC-type bacteriocin/lantibiotic exporters, c | 100.0 | |
| PRK11174 | 588 | cysteine/glutathione ABC transporter membrane/ATP- | 100.0 | |
| COG2274 | 709 | SunT ABC-type bacteriocin/lantibiotic exporters, c | 100.0 | |
| TIGR03797 | 686 | NHPM_micro_ABC2 NHPM bacteriocin system ABC transp | 100.0 | |
| KOG0055 | 1228 | consensus Multidrug/pheromone exporter, ABC superf | 100.0 | |
| TIGR00958 | 711 | 3a01208 Conjugate Transporter-2 (CT2) Family prote | 100.0 | |
| TIGR03796 | 710 | NHPM_micro_ABC1 NHPM bacteriocin system ABC transp | 100.0 | |
| TIGR01193 | 708 | bacteriocin_ABC ABC-type bacteriocin transporter. | 100.0 | |
| TIGR03375 | 694 | type_I_sec_LssB type I secretion system ATPase, Ls | 100.0 | |
| PRK11176 | 582 | lipid transporter ATP-binding/permease protein; Pr | 100.0 | |
| COG1132 | 567 | MdlB ABC-type multidrug transport system, ATPase a | 100.0 | |
| PRK10790 | 592 | putative multidrug transporter membrane\ATP-bindin | 100.0 | |
| TIGR02203 | 571 | MsbA_lipidA lipid A export permease/ATP-binding pr | 100.0 | |
| PRK13657 | 588 | cyclic beta-1,2-glucan ABC transporter; Provisiona | 100.0 | |
| PRK11160 | 574 | cysteine/glutathione ABC transporter membrane/ATP- | 100.0 | |
| COG4988 | 559 | CydD ABC-type transport system involved in cytochr | 100.0 | |
| COG1132 | 567 | MdlB ABC-type multidrug transport system, ATPase a | 100.0 | |
| PRK11174 | 588 | cysteine/glutathione ABC transporter membrane/ATP- | 100.0 | |
| TIGR01846 | 694 | type_I_sec_HlyB type I secretion system ABC transp | 100.0 | |
| TIGR02204 | 576 | MsbA_rel ABC transporter, permease/ATP-binding pro | 100.0 | |
| KOG0056 | 790 | consensus Heavy metal exporter HMT1, ABC superfami | 100.0 | |
| TIGR02868 | 529 | CydC thiol reductant ABC exporter, CydC subunit. T | 100.0 | |
| TIGR01192 | 585 | chvA glucan exporter ATP-binding protein. This mod | 100.0 | |
| PRK10789 | 569 | putative multidrug transporter membrane\ATP-bindin | 100.0 | |
| PTZ00265 | 1466 | multidrug resistance protein (mdr1); Provisional | 100.0 | |
| TIGR03797 | 686 | NHPM_micro_ABC2 NHPM bacteriocin system ABC transp | 100.0 | |
| TIGR00958 | 711 | 3a01208 Conjugate Transporter-2 (CT2) Family prote | 100.0 | |
| TIGR01193 | 708 | bacteriocin_ABC ABC-type bacteriocin transporter. | 100.0 | |
| COG1123 | 539 | ATPase components of various ABC-type transport sy | 100.0 | |
| TIGR01842 | 544 | type_I_sec_PrtD type I secretion system ABC transp | 100.0 | |
| PRK10790 | 592 | putative multidrug transporter membrane\ATP-bindin | 100.0 | |
| TIGR03796 | 710 | NHPM_micro_ABC1 NHPM bacteriocin system ABC transp | 100.0 | |
| PRK11160 | 574 | cysteine/glutathione ABC transporter membrane/ATP- | 100.0 | |
| COG4988 | 559 | CydD ABC-type transport system involved in cytochr | 100.0 | |
| TIGR02857 | 529 | CydD thiol reductant ABC exporter, CydD subunit. U | 100.0 | |
| PRK10261 | 623 | glutathione transporter ATP-binding protein; Provi | 100.0 | |
| KOG0057 | 591 | consensus Mitochondrial Fe/S cluster exporter, ABC | 100.0 | |
| PRK11176 | 582 | lipid transporter ATP-binding/permease protein; Pr | 100.0 | |
| COG4987 | 573 | CydC ABC-type transport system involved in cytochr | 100.0 | |
| TIGR03375 | 694 | type_I_sec_LssB type I secretion system ATPase, Ls | 100.0 | |
| PRK15134 | 529 | microcin C ABC transporter ATP-binding protein Yej | 100.0 | |
| COG5265 | 497 | ATM1 ABC-type transport system involved in Fe-S cl | 100.0 | |
| TIGR00957 | 1522 | MRP_assoc_pro multi drug resistance-associated pro | 100.0 | |
| TIGR01846 | 694 | type_I_sec_HlyB type I secretion system ABC transp | 100.0 | |
| PRK10762 | 501 | D-ribose transporter ATP binding protein; Provisio | 100.0 | |
| PRK15439 | 510 | autoinducer 2 ABC transporter ATP-binding protein | 100.0 | |
| PRK13549 | 506 | xylose transporter ATP-binding subunit; Provisiona | 100.0 | |
| PRK09700 | 510 | D-allose transporter ATP-binding protein; Provisio | 100.0 | |
| COG4987 | 573 | CydC ABC-type transport system involved in cytochr | 100.0 | |
| TIGR03269 | 520 | met_CoM_red_A2 methyl coenzyme M reductase system, | 100.0 | |
| PLN03130 | 1622 | ABC transporter C family member; Provisional | 100.0 | |
| KOG0056 | 790 | consensus Heavy metal exporter HMT1, ABC superfami | 100.0 | |
| TIGR02203 | 571 | MsbA_lipidA lipid A export permease/ATP-binding pr | 100.0 | |
| PRK11288 | 501 | araG L-arabinose transporter ATP-binding protein; | 100.0 | |
| PTZ00243 | 1560 | ABC transporter; Provisional | 100.0 | |
| PRK15064 | 530 | ABC transporter ATP-binding protein; Provisional | 100.0 | |
| PRK13657 | 588 | cyclic beta-1,2-glucan ABC transporter; Provisiona | 100.0 | |
| TIGR02633 | 500 | xylG D-xylose ABC transporter, ATP-binding protein | 100.0 | |
| PLN03232 | 1495 | ABC transporter C family member; Provisional | 100.0 | |
| TIGR01192 | 585 | chvA glucan exporter ATP-binding protein. This mod | 100.0 | |
| KOG0057 | 591 | consensus Mitochondrial Fe/S cluster exporter, ABC | 100.0 | |
| PRK10789 | 569 | putative multidrug transporter membrane\ATP-bindin | 100.0 | |
| TIGR02204 | 576 | MsbA_rel ABC transporter, permease/ATP-binding pro | 100.0 | |
| PRK10938 | 490 | putative molybdenum transport ATP-binding protein | 100.0 | |
| TIGR01194 | 555 | cyc_pep_trnsptr cyclic peptide transporter. This m | 100.0 | |
| COG4172 | 534 | ABC-type uncharacterized transport system, duplica | 100.0 | |
| PRK10982 | 491 | galactose/methyl galaxtoside transporter ATP-bindi | 100.0 | |
| PRK11819 | 556 | putative ABC transporter ATP-binding protein; Revi | 100.0 | |
| TIGR02868 | 529 | CydC thiol reductant ABC exporter, CydC subunit. T | 100.0 | |
| TIGR03719 | 552 | ABC_ABC_ChvD ATP-binding cassette protein, ChvD fa | 100.0 | |
| COG4618 | 580 | ArpD ABC-type protease/lipase transport system, AT | 100.0 | |
| TIGR00956 | 1394 | 3a01205 Pleiotropic Drug Resistance (PDR) Family p | 100.0 | |
| TIGR01257 | 2272 | rim_protein retinal-specific rim ABC transporter. | 100.0 | |
| PRK10636 | 638 | putative ABC transporter ATP-binding protein; Prov | 100.0 | |
| TIGR02857 | 529 | CydD thiol reductant ABC exporter, CydD subunit. U | 100.0 | |
| TIGR01271 | 1490 | CFTR_protein cystic fibrosis transmembrane conduct | 100.0 | |
| PRK10522 | 547 | multidrug transporter membrane component/ATP-bindi | 100.0 | |
| PRK11147 | 635 | ABC transporter ATPase component; Reviewed | 100.0 | |
| TIGR01842 | 544 | type_I_sec_PrtD type I secretion system ABC transp | 100.0 | |
| TIGR01194 | 555 | cyc_pep_trnsptr cyclic peptide transporter. This m | 100.0 | |
| COG5265 | 497 | ATM1 ABC-type transport system involved in Fe-S cl | 100.0 | |
| COG0488 | 530 | Uup ATPase components of ABC transporters with dup | 100.0 | |
| PLN03073 | 718 | ABC transporter F family; Provisional | 100.0 | |
| PLN03140 | 1470 | ABC transporter G family member; Provisional | 100.0 | |
| TIGR00954 | 659 | 3a01203 Peroxysomal Fatty Acyl CoA Transporter (FA | 100.0 | |
| PRK13409 | 590 | putative ATPase RIL; Provisional | 100.0 | |
| KOG0054 | 1381 | consensus Multidrug resistance-associated protein/ | 100.0 | |
| PRK10522 | 547 | multidrug transporter membrane component/ATP-bindi | 100.0 | |
| COG1129 | 500 | MglA ABC-type sugar transport system, ATPase compo | 100.0 | |
| COG3845 | 501 | ABC-type uncharacterized transport systems, ATPase | 100.0 | |
| COG4618 | 580 | ArpD ABC-type protease/lipase transport system, AT | 100.0 | |
| COG1126 | 240 | GlnQ ABC-type polar amino acid transport system, A | 100.0 | |
| TIGR00954 | 659 | 3a01203 Peroxysomal Fatty Acyl CoA Transporter (FA | 100.0 | |
| PRK14257 | 329 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| COG1135 | 339 | AbcC ABC-type metal ion transport system, ATPase c | 100.0 | |
| COG1116 | 248 | TauB ABC-type nitrate/sulfonate/bicarbonate transp | 100.0 | |
| COG1125 | 309 | OpuBA ABC-type proline/glycine betaine transport s | 100.0 | |
| cd03289 | 275 | ABCC_CFTR2 The CFTR subfamily domain 2. The cystic | 100.0 | |
| COG1120 | 258 | FepC ABC-type cobalamin/Fe3+-siderophores transpor | 100.0 | |
| COG1121 | 254 | ZnuC ABC-type Mn/Zn transport systems, ATPase comp | 100.0 | |
| COG1127 | 263 | Ttg2A ABC-type transport system involved in resist | 100.0 | |
| COG1117 | 253 | PstB ABC-type phosphate transport system, ATPase c | 100.0 | |
| KOG0927 | 614 | consensus Predicted transporter (ABC superfamily) | 100.0 | |
| COG1118 | 345 | CysA ABC-type sulfate/molybdate transport systems, | 100.0 | |
| COG3839 | 338 | MalK ABC-type sugar transport systems, ATPase comp | 100.0 | |
| COG3840 | 231 | ThiQ ABC-type thiamine transport system, ATPase co | 100.0 | |
| COG3842 | 352 | PotA ABC-type spermidine/putrescine transport syst | 100.0 | |
| cd03289 | 275 | ABCC_CFTR2 The CFTR subfamily domain 2. The cystic | 100.0 | |
| COG1136 | 226 | SalX ABC-type antimicrobial peptide transport syst | 100.0 | |
| cd03291 | 282 | ABCC_CFTR1 The CFTR subfamily domain 1. The cystic | 100.0 | |
| cd03252 | 237 | ABCC_Hemolysin The ABC-transporter hemolysin B is | 100.0 | |
| COG3638 | 258 | ABC-type phosphate/phosphonate transport system, A | 100.0 | |
| cd03250 | 204 | ABCC_MRP_domain1 Domain 1 of the ABC subfamily C. | 100.0 | |
| COG1124 | 252 | DppF ABC-type dipeptide/oligopeptide/nickel transp | 100.0 | |
| COG1122 | 235 | CbiO ABC-type cobalt transport system, ATPase comp | 100.0 | |
| COG2884 | 223 | FtsE Predicted ATPase involved in cell division [C | 100.0 | |
| KOG0062 | 582 | consensus ATPase component of ABC transporters wit | 100.0 | |
| cd03249 | 238 | ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) | 100.0 | |
| cd03254 | 229 | ABCC_Glucan_exporter_like Glucan exporter ATP-bind | 100.0 | |
| cd03253 | 236 | ABCC_ATM1_transporter ATM1 is an ABC transporter t | 100.0 | |
| cd03251 | 234 | ABCC_MsbA MsbA is an essential ABC transporter, cl | 100.0 | |
| cd03244 | 221 | ABCC_MRP_domain2 Domain 2 of the ABC subfamily C. | 100.0 | |
| cd03288 | 257 | ABCC_SUR2 The SUR domain 2. The sulfonylurea recep | 100.0 | |
| TIGR02314 | 343 | ABC_MetN D-methionine ABC transporter, ATP-binding | 100.0 | |
| PRK11650 | 356 | ugpC glycerol-3-phosphate transporter ATP-binding | 100.0 | |
| cd03245 | 220 | ABCC_bacteriocin_exporters ABC-type bacteriocin ex | 100.0 | |
| PRK11432 | 351 | fbpC ferric transporter ATP-binding subunit; Provi | 100.0 | |
| cd03261 | 235 | ABC_Org_Solvent_Resistant ABC (ATP-binding cassett | 100.0 | |
| PRK13631 | 320 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK09452 | 375 | potA putrescine/spermidine ABC transporter ATPase | 100.0 | |
| TIGR03265 | 353 | PhnT2 putative 2-aminoethylphosphonate ABC transpo | 100.0 | |
| PRK10851 | 353 | sulfate/thiosulfate transporter subunit; Provision | 100.0 | |
| PRK13637 | 287 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| TIGR03258 | 362 | PhnT 2-aminoethylphosphonate ABC transport system, | 100.0 | |
| PRK13643 | 288 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK13650 | 279 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| TIGR01186 | 363 | proV glycine betaine/L-proline transport ATP bindi | 100.0 | |
| PRK13634 | 290 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| cd03296 | 239 | ABC_CysA_sulfate_importer Part of the ABC transpor | 100.0 | |
| cd03259 | 213 | ABC_Carb_Solutes_like ABC Carbohydrate and Solute | 100.0 | |
| PRK11000 | 369 | maltose/maltodextrin transporter ATP-binding prote | 100.0 | |
| cd03219 | 236 | ABC_Mj1267_LivG_branched The Mj1267/LivG ABC trans | 100.0 | |
| cd03260 | 227 | ABC_PstB_phosphate_transporter Phosphate uptake is | 100.0 | |
| PRK13647 | 274 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| KOG0065 | 1391 | consensus Pleiotropic drug resistance proteins (PD | 100.0 | |
| PRK13537 | 306 | nodulation ABC transporter NodI; Provisional | 100.0 | |
| PRK13651 | 305 | cobalt transporter ATP-binding subunit; Provisiona | 100.0 | |
| cd03226 | 205 | ABC_cobalt_CbiO_domain2 Domain II of the ABC compo | 100.0 | |
| PRK13646 | 286 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| cd03293 | 220 | ABC_NrtD_SsuB_transporters NrtD and SsuB are the A | 100.0 | |
| TIGR00960 | 216 | 3a0501s02 Type II (General) Secretory Pathway (IIS | 100.0 | |
| PRK11153 | 343 | metN DL-methionine transporter ATP-binding subunit | 100.0 | |
| PRK11607 | 377 | potG putrescine transporter ATP-binding subunit; P | 100.0 | |
| cd03290 | 218 | ABCC_SUR1_N The SUR domain 1. The sulfonylurea rec | 100.0 | |
| cd03248 | 226 | ABCC_TAP TAP, the Transporter Associated with Anti | 100.0 | |
| cd03265 | 220 | ABC_DrrA DrrA is the ATP-binding protein component | 100.0 | |
| PRK14250 | 241 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| cd03263 | 220 | ABC_subfamily_A The ABCA subfamily mediates the tr | 100.0 | |
| TIGR02315 | 243 | ABC_phnC phosphonate ABC transporter, ATP-binding | 100.0 | |
| PRK14242 | 253 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| cd03256 | 241 | ABC_PhnC_transporter ABC-type phosphate/phosphonat | 100.0 | |
| cd03268 | 208 | ABC_BcrA_bacitracin_resist The BcrA subfamily repr | 100.0 | |
| cd03255 | 218 | ABC_MJ0796_Lo1CDE_FtsE This family is comprised of | 100.0 | |
| PRK14269 | 246 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK11629 | 233 | lolD lipoprotein transporter ATP-binding subunit; | 100.0 | |
| PRK11247 | 257 | ssuB aliphatic sulfonates transport ATP-binding su | 100.0 | |
| PRK09536 | 402 | btuD corrinoid ABC transporter ATPase; Reviewed | 100.0 | |
| TIGR00972 | 247 | 3a0107s01c2 phosphate ABC transporter, ATP-binding | 100.0 | |
| TIGR03864 | 236 | PQQ_ABC_ATP ABC transporter, ATP-binding subunit, | 100.0 | |
| COG4175 | 386 | ProV ABC-type proline/glycine betaine transport sy | 100.0 | |
| PRK13644 | 274 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK14273 | 254 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK13536 | 340 | nodulation factor exporter subunit NodI; Provision | 100.0 | |
| PRK13635 | 279 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| cd03369 | 207 | ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-ty | 100.0 | |
| cd03258 | 233 | ABC_MetN_methionine_transporter MetN (also known a | 100.0 | |
| cd03235 | 213 | ABC_Metallic_Cations ABC component of the metal-ty | 100.0 | |
| cd03224 | 222 | ABC_TM1139_LivF_branched LivF (TM1139) is part of | 100.0 | |
| cd03301 | 213 | ABC_MalK_N The N-terminal ATPase domain of the mal | 100.0 | |
| TIGR01288 | 303 | nodI ATP-binding ABC transporter family nodulation | 100.0 | |
| COG1131 | 293 | CcmA ABC-type multidrug transport system, ATPase c | 100.0 | |
| cd03218 | 232 | ABC_YhbG The ABC transporters belonging to the Yhb | 100.0 | |
| cd03294 | 269 | ABC_Pro_Gly_Bertaine This family comprises the gly | 100.0 | |
| PRK14257 | 329 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK13636 | 283 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK13641 | 287 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| COG4615 | 546 | PvdE ABC-type siderophore export system, fused ATP | 100.0 | |
| PRK10744 | 260 | pstB phosphate transporter ATP-binding protein; Pr | 100.0 | |
| cd03266 | 218 | ABC_NatA_sodium_exporter NatA is the ATPase compon | 100.0 | |
| COG4555 | 245 | NatA ABC-type Na+ transport system, ATPase compone | 100.0 | |
| cd03264 | 211 | ABC_drug_resistance_like ABC-type multidrug transp | 100.0 | |
| PRK11831 | 269 | putative ABC transporter ATP-binding protein YrbF; | 100.0 | |
| PRK09493 | 240 | glnQ glutamine ABC transporter ATP-binding protein | 100.0 | |
| PRK13640 | 282 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK10619 | 257 | histidine/lysine/arginine/ornithine transporter su | 100.0 | |
| PRK14235 | 267 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| PRK10070 | 400 | glycine betaine transporter ATP-binding subunit; P | 100.0 | |
| TIGR02211 | 221 | LolD_lipo_ex lipoprotein releasing system, ATP-bin | 100.0 | |
| PRK13632 | 271 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| cd03269 | 210 | ABC_putative_ATPase This subfamily is involved in | 100.0 | |
| cd03295 | 242 | ABC_OpuCA_Osmoprotection OpuCA is a the ATP bindin | 100.0 | |
| PRK13649 | 280 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK13633 | 280 | cobalt transporter ATP-binding subunit; Provisiona | 100.0 | |
| PRK14274 | 259 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| TIGR03415 | 382 | ABC_choXWV_ATP choline ABC transporter, ATP-bindin | 100.0 | |
| TIGR03411 | 242 | urea_trans_UrtD urea ABC transporter, ATP-binding | 100.0 | |
| PRK13642 | 277 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK13645 | 289 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK11231 | 255 | fecE iron-dicitrate transporter ATP-binding subuni | 100.0 | |
| PRK15079 | 331 | oligopeptide ABC transporter ATP-binding protein O | 100.0 | |
| COG0410 | 237 | LivF ABC-type branched-chain amino acid transport | 100.0 | |
| PRK10247 | 225 | putative ABC transporter ATP-binding protein YbbL; | 100.0 | |
| PRK11264 | 250 | putative amino-acid ABC transporter ATP-binding pr | 100.0 | |
| cd03298 | 211 | ABC_ThiQ_thiamine_transporter ABC-type thiamine tr | 100.0 | |
| PRK14245 | 250 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14248 | 268 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14237 | 267 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| PRK10575 | 265 | iron-hydroxamate transporter ATP-binding subunit; | 100.0 | |
| PRK11124 | 242 | artP arginine transporter ATP-binding subunit; Pro | 100.0 | |
| PRK14259 | 269 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK11300 | 255 | livG leucine/isoleucine/valine transporter ATP-bin | 100.0 | |
| TIGR02673 | 214 | FtsE cell division ATP-binding protein FtsE. This | 100.0 | |
| TIGR03522 | 301 | GldA_ABC_ATP gliding motility-associated ABC trans | 100.0 | |
| PRK14268 | 258 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK13638 | 271 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK10584 | 228 | putative ABC transporter ATP-binding protein YbbA; | 100.0 | |
| PRK14239 | 252 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| PRK10895 | 241 | lipopolysaccharide ABC transporter ATP-binding pro | 100.0 | |
| cd03292 | 214 | ABC_FtsE_transporter FtsE is a hydrophilic nucleot | 100.0 | |
| PRK13648 | 269 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK11614 | 237 | livF leucine/isoleucine/valine transporter ATP-bin | 100.0 | |
| PRK14249 | 251 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| TIGR03410 | 230 | urea_trans_UrtE urea ABC transporter, ATP-binding | 100.0 | |
| PRK13652 | 277 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK13639 | 275 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| cd03247 | 178 | ABCC_cytochrome_bd The CYD subfamily implicated in | 100.0 | |
| cd03223 | 166 | ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cass | 100.0 | |
| PRK14240 | 250 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| PRK14251 | 251 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK13548 | 258 | hmuV hemin importer ATP-binding subunit; Provision | 100.0 | |
| PRK14247 | 250 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| TIGR03005 | 252 | ectoine_ehuA ectoine/hydroxyectoine ABC transporte | 100.0 | |
| TIGR02769 | 265 | nickel_nikE nickel import ATP-binding protein NikE | 100.0 | |
| PRK10253 | 265 | iron-enterobactin transporter ATP-binding protein; | 100.0 | |
| PRK14270 | 251 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK10771 | 232 | thiQ thiamine transporter ATP-binding subunit; Pro | 100.0 | |
| cd03225 | 211 | ABC_cobalt_CbiO_domain1 Domain I of the ABC compon | 100.0 | |
| PRK11248 | 255 | tauB taurine transporter ATP-binding subunit; Prov | 100.0 | |
| PRK14236 | 272 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| TIGR03873 | 256 | F420-0_ABC_ATP proposed F420-0 ABC transporter, AT | 100.0 | |
| PRK10908 | 222 | cell division protein FtsE; Provisional | 100.0 | |
| PRK14267 | 253 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14238 | 271 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| TIGR01188 | 302 | drrA daunorubicin resistance ABC transporter ATP-b | 100.0 | |
| PRK14243 | 264 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| COG1126 | 240 | GlnQ ABC-type polar amino acid transport system, A | 100.0 | |
| PRK11308 | 327 | dppF dipeptide transporter ATP-binding subunit; Pr | 100.0 | |
| PRK14244 | 251 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| TIGR01978 | 243 | sufC FeS assembly ATPase SufC. SufC is part of the | 100.0 | |
| TIGR03740 | 223 | galliderm_ABC gallidermin-class lantibiotic protec | 100.0 | |
| cd03262 | 213 | ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP- | 100.0 | |
| PRK09984 | 262 | phosphonate/organophosphate ester transporter subu | 100.0 | |
| PRK11144 | 352 | modC molybdate transporter ATP-binding protein; Pr | 100.0 | |
| cd03257 | 228 | ABC_NikE_OppD_transporters The ABC transporter sub | 100.0 | |
| PRK14262 | 250 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14253 | 249 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK11022 | 326 | dppD dipeptide transporter ATP-binding subunit; Pr | 100.0 | |
| PRK09544 | 251 | znuC high-affinity zinc transporter ATPase; Review | 100.0 | |
| PRK14256 | 252 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| TIGR01277 | 213 | thiQ thiamine ABC transporter, ATP-binding protein | 100.0 | |
| cd03300 | 232 | ABC_PotA_N PotA is an ABC-type transporter and the | 100.0 | |
| COG1137 | 243 | YhbG ABC-type (unclassified) transport system, ATP | 100.0 | |
| PRK14261 | 253 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| COG4525 | 259 | TauB ABC-type taurine transport system, ATPase com | 100.0 | |
| TIGR00968 | 237 | 3a0106s01 sulfate ABC transporter, ATP-binding pro | 100.0 | |
| PRK14254 | 285 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14271 | 276 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14275 | 286 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| cd03246 | 173 | ABCC_Protease_Secretion This family represents the | 100.0 | |
| PRK14252 | 265 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14260 | 259 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK15112 | 267 | antimicrobial peptide ABC system ATP-binding prote | 100.0 | |
| PRK14265 | 274 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14263 | 261 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK15093 | 330 | antimicrobial peptide ABC transporter ATP-binding | 100.0 | |
| PRK15056 | 272 | manganese/iron transporter ATP-binding protein; Pr | 100.0 | |
| PRK11701 | 258 | phnK phosphonate C-P lyase system protein PhnK; Pr | 100.0 | |
| PRK14264 | 305 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14241 | 258 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| PRK14266 | 250 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK09473 | 330 | oppD oligopeptide transporter ATP-binding componen | 100.0 | |
| COG4598 | 256 | HisP ABC-type histidine transport system, ATPase c | 100.0 | |
| PRK14255 | 252 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| cd03299 | 235 | ABC_ModC_like Archeal protein closely related to M | 100.0 | |
| PRK14272 | 252 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK13547 | 272 | hmuV hemin importer ATP-binding subunit; Provision | 100.0 | |
| COG4181 | 228 | Predicted ABC-type transport system involved in ly | 100.0 | |
| COG4178 | 604 | ABC-type uncharacterized transport system, permeas | 100.0 | |
| COG1125 | 309 | OpuBA ABC-type proline/glycine betaine transport s | 100.0 | |
| PRK10418 | 254 | nikD nickel transporter ATP-binding protein NikD; | 100.0 | |
| PRK14258 | 261 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| cd03234 | 226 | ABCG_White The White subfamily represents ABC tran | 100.0 | |
| COG0411 | 250 | LivG ABC-type branched-chain amino acid transport | 100.0 | |
| TIGR02142 | 354 | modC_ABC molybdenum ABC transporter, ATP-binding p | 100.0 | |
| PRK13546 | 264 | teichoic acids export protein ATP-binding subunit; | 100.0 | |
| PRK10419 | 268 | nikE nickel transporter ATP-binding protein NikE; | 100.0 | |
| TIGR02982 | 220 | heterocyst_DevA ABC exporter ATP-binding subunit, | 100.0 | |
| PRK14246 | 257 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| cd03297 | 214 | ABC_ModC_molybdenum_transporter ModC is an ABC-typ | 100.0 | |
| COG1123 | 539 | ATPase components of various ABC-type transport sy | 100.0 | |
| cd03230 | 173 | ABC_DR_subfamily_A This family of ATP-binding prot | 100.0 | |
| COG1135 | 339 | AbcC ABC-type metal ion transport system, ATPase c | 100.0 | |
| COG4559 | 259 | ABC-type hemin transport system, ATPase component | 100.0 | |
| TIGR02323 | 253 | CP_lyasePhnK phosphonate C-P lyase system protein | 100.0 | |
| cd03213 | 194 | ABCG_EPDR ABCG transporters are involved in eye pi | 100.0 | |
| COG0444 | 316 | DppD ABC-type dipeptide/oligopeptide/nickel transp | 100.0 | |
| PRK13545 | 549 | tagH teichoic acids export protein ATP-binding sub | 100.0 | |
| cd03233 | 202 | ABC_PDR_domain1 The pleiotropic drug resistance (P | 100.0 | |
| cd03232 | 192 | ABC_PDR_domain2 The pleiotropic drug resistance-li | 100.0 | |
| COG4619 | 223 | ABC-type uncharacterized transport system, ATPase | 100.0 | |
| cd03288 | 257 | ABCC_SUR2 The SUR domain 2. The sulfonylurea recep | 100.0 | |
| cd03228 | 171 | ABCC_MRP_Like The MRP (Mutidrug Resistance Protein | 100.0 | |
| cd03229 | 178 | ABC_Class3 This class is comprised of all BPD (Bin | 100.0 | |
| TIGR03608 | 206 | L_ocin_972_ABC putative bacteriocin export ABC tra | 100.0 | |
| TIGR01184 | 230 | ntrCD nitrate transport ATP-binding subunits C and | 100.0 | |
| CHL00131 | 252 | ycf16 sulfate ABC transporter protein; Validated | 100.0 | |
| cd03215 | 182 | ABC_Carb_Monos_II This family represents domain II | 100.0 | |
| PRK13543 | 214 | cytochrome c biogenesis protein CcmA; Provisional | 100.0 | |
| cd03220 | 224 | ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transpo | 100.0 | |
| cd03231 | 201 | ABC_CcmA_heme_exporter CcmA, the ATP-binding compo | 100.0 | |
| cd03267 | 236 | ABC_NatA_like Similar in sequence to NatA, this is | 100.0 | |
| PRK10261 | 623 | glutathione transporter ATP-binding protein; Provi | 100.0 | |
| COG4604 | 252 | CeuD ABC-type enterochelin transport system, ATPas | 100.0 | |
| TIGR02770 | 230 | nickel_nikD nickel import ATP-binding protein NikD | 100.0 | |
| PRK03695 | 248 | vitamin B12-transporter ATPase; Provisional | 100.0 | |
| cd03217 | 200 | ABC_FeS_Assembly ABC-type transport system involve | 100.0 | |
| PRK13538 | 204 | cytochrome c biogenesis protein CcmA; Provisional | 100.0 | |
| cd03252 | 237 | ABCC_Hemolysin The ABC-transporter hemolysin B is | 100.0 | |
| PRK13540 | 200 | cytochrome c biogenesis protein CcmA; Provisional | 100.0 | |
| PRK09580 | 248 | sufC cysteine desulfurase ATPase component; Review | 100.0 | |
| COG1117 | 253 | PstB ABC-type phosphate transport system, ATPase c | 100.0 | |
| TIGR01186 | 363 | proV glycine betaine/L-proline transport ATP bindi | 100.0 | |
| COG4161 | 242 | ArtP ABC-type arginine transport system, ATPase co | 100.0 | |
| PRK13539 | 207 | cytochrome c biogenesis protein CcmA; Provisional | 100.0 | |
| COG4148 | 352 | ModC ABC-type molybdate transport system, ATPase c | 100.0 | |
| cd03214 | 180 | ABC_Iron-Siderophores_B12_Hemin ABC transporters, | 100.0 | |
| cd03216 | 163 | ABC_Carb_Monos_I This family represents the domain | 100.0 | |
| PRK13549 | 506 | xylose transporter ATP-binding subunit; Provisiona | 100.0 | |
| COG4608 | 268 | AppF ABC-type oligopeptide transport system, ATPas | 100.0 | |
| COG1127 | 263 | Ttg2A ABC-type transport system involved in resist | 100.0 | |
| TIGR03269 | 520 | met_CoM_red_A2 methyl coenzyme M reductase system, | 100.0 | |
| cd03237 | 246 | ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 o | 100.0 | |
| TIGR02314 | 343 | ABC_MetN D-methionine ABC transporter, ATP-binding | 100.0 | |
| PRK13541 | 195 | cytochrome c biogenesis protein CcmA; Provisional | 100.0 | |
| TIGR02324 | 224 | CP_lyasePhnL phosphonate C-P lyase system protein | 100.0 | |
| PRK15134 | 529 | microcin C ABC transporter ATP-binding protein Yej | 100.0 | |
| PRK15064 | 530 | ABC transporter ATP-binding protein; Provisional | 100.0 | |
| TIGR03771 | 223 | anch_rpt_ABC anchored repeat-type ABC transporter, | 100.0 | |
| TIGR01189 | 198 | ccmA heme ABC exporter, ATP-binding protein CcmA. | 100.0 | |
| cd03244 | 221 | ABCC_MRP_domain2 Domain 2 of the ABC subfamily C. | 100.0 | |
| COG4172 | 534 | ABC-type uncharacterized transport system, duplica | 100.0 | |
| cd03369 | 207 | ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-ty | 100.0 | |
| COG3839 | 338 | MalK ABC-type sugar transport systems, ATPase comp | 100.0 | |
| cd03251 | 234 | ABCC_MsbA MsbA is an essential ABC transporter, cl | 100.0 | |
| cd03261 | 235 | ABC_Org_Solvent_Resistant ABC (ATP-binding cassett | 100.0 | |
| TIGR01166 | 190 | cbiO cobalt transport protein ATP-binding subunit. | 100.0 | |
| PLN03211 | 659 | ABC transporter G-25; Provisional | 100.0 | |
| PRK14250 | 241 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| TIGR00955 | 617 | 3a01204 The Eye Pigment Precursor Transporter (EPP | 100.0 | |
| cd03253 | 236 | ABCC_ATM1_transporter ATM1 is an ABC transporter t | 100.0 | |
| PRK09700 | 510 | D-allose transporter ATP-binding protein; Provisio | 100.0 | |
| cd03221 | 144 | ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is | 100.0 | |
| COG4152 | 300 | ABC-type uncharacterized transport system, ATPase | 100.0 | |
| COG3840 | 231 | ThiQ ABC-type thiamine transport system, ATPase co | 100.0 | |
| cd03260 | 227 | ABC_PstB_phosphate_transporter Phosphate uptake is | 100.0 | |
| TIGR02633 | 500 | xylG D-xylose ABC transporter, ATP-binding protein | 100.0 | |
| PRK15177 | 213 | Vi polysaccharide export ATP-binding protein VexC; | 100.0 | |
| PRK13650 | 279 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK11819 | 556 | putative ABC transporter ATP-binding protein; Revi | 100.0 | |
| TIGR01257 | 2272 | rim_protein retinal-specific rim ABC transporter. | 100.0 | |
| COG1120 | 258 | FepC ABC-type cobalamin/Fe3+-siderophores transpor | 100.0 | |
| TIGR03719 | 552 | ABC_ABC_ChvD ATP-binding cassette protein, ChvD fa | 100.0 | |
| COG1122 | 235 | CbiO ABC-type cobalt transport system, ATPase comp | 100.0 | |
| COG4615 | 546 | PvdE ABC-type siderophore export system, fused ATP | 100.0 | |
| PRK11288 | 501 | araG L-arabinose transporter ATP-binding protein; | 100.0 | |
| PRK13631 | 320 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| KOG0066 | 807 | consensus eIF2-interacting protein ABC50 (ABC supe | 100.0 | |
| cd03249 | 238 | ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) | 100.0 | |
| PRK10636 | 638 | putative ABC transporter ATP-binding protein; Prov | 100.0 | |
| KOG0060 | 659 | consensus Long-chain acyl-CoA transporter, ABC sup | 100.0 | |
| PRK11432 | 351 | fbpC ferric transporter ATP-binding subunit; Provi | 100.0 | |
| cd03294 | 269 | ABC_Pro_Gly_Bertaine This family comprises the gly | 100.0 | |
| cd03254 | 229 | ABCC_Glucan_exporter_like Glucan exporter ATP-bind | 100.0 | |
| PRK10762 | 501 | D-ribose transporter ATP binding protein; Provisio | 100.0 | |
| PRK11153 | 343 | metN DL-methionine transporter ATP-binding subunit | 100.0 | |
| PRK11650 | 356 | ugpC glycerol-3-phosphate transporter ATP-binding | 100.0 | |
| TIGR03415 | 382 | ABC_choXWV_ATP choline ABC transporter, ATP-bindin | 99.98 | |
| PRK14269 | 246 | phosphate ABC transporter ATP-binding protein; Pro | 99.98 | |
| PRK13647 | 274 | cbiO cobalt transporter ATP-binding subunit; Provi | 99.98 | |
| PLN03073 | 718 | ABC transporter F family; Provisional | 99.98 | |
| PRK13635 | 279 | cbiO cobalt transporter ATP-binding subunit; Provi | 99.98 | |
| TIGR00972 | 247 | 3a0107s01c2 phosphate ABC transporter, ATP-binding | 99.98 | |
| cd03219 | 236 | ABC_Mj1267_LivG_branched The Mj1267/LivG ABC trans | 99.98 | |
| PRK10070 | 400 | glycine betaine transporter ATP-binding subunit; P | 99.98 | |
| cd03296 | 239 | ABC_CysA_sulfate_importer Part of the ABC transpor | 99.98 | |
| COG1124 | 252 | DppF ABC-type dipeptide/oligopeptide/nickel transp | 99.98 | |
| cd03263 | 220 | ABC_subfamily_A The ABCA subfamily mediates the tr | 99.98 | |
| cd03256 | 241 | ABC_PhnC_transporter ABC-type phosphate/phosphonat | 99.98 | |
| TIGR01187 | 325 | potA spermidine/putrescine ABC transporter ATP-bin | 99.98 | |
| PRK15079 | 331 | oligopeptide ABC transporter ATP-binding protein O | 99.98 | |
| cd03258 | 233 | ABC_MetN_methionine_transporter MetN (also known a | 99.98 | |
| PRK13637 | 287 | cbiO cobalt transporter ATP-binding subunit; Provi | 99.98 | |
| PRK10851 | 353 | sulfate/thiosulfate transporter subunit; Provision | 99.98 | |
| TIGR03265 | 353 | PhnT2 putative 2-aminoethylphosphonate ABC transpo | 99.98 | |
| PRK11147 | 635 | ABC transporter ATPase component; Reviewed | 99.98 | |
| TIGR02315 | 243 | ABC_phnC phosphonate ABC transporter, ATP-binding | 99.98 | |
| PRK10535 | 648 | macrolide transporter ATP-binding /permease protei | 99.98 | |
| PRK15439 | 510 | autoinducer 2 ABC transporter ATP-binding protein | 99.97 | |
| cd03264 | 211 | ABC_drug_resistance_like ABC-type multidrug transp | 99.97 | |
| COG2884 | 223 | FtsE Predicted ATPase involved in cell division [C | 99.97 | |
| cd03295 | 242 | ABC_OpuCA_Osmoprotection OpuCA is a the ATP bindin | 99.97 | |
| cd03224 | 222 | ABC_TM1139_LivF_branched LivF (TM1139) is part of | 99.97 | |
| PRK09452 | 375 | potA putrescine/spermidine ABC transporter ATPase | 99.97 | |
| PRK14273 | 254 | phosphate ABC transporter ATP-binding protein; Pro | 99.97 | |
| PRK14244 | 251 | phosphate ABC transporter ATP-binding protein; Pro | 99.97 | |
| PRK09536 | 402 | btuD corrinoid ABC transporter ATPase; Reviewed | 99.97 | |
| PRK13642 | 277 | cbiO cobalt transporter ATP-binding subunit; Provi | 99.97 | |
| TIGR03411 | 242 | urea_trans_UrtD urea ABC transporter, ATP-binding | 99.97 | |
| TIGR03864 | 236 | PQQ_ABC_ATP ABC transporter, ATP-binding subunit, | 99.97 | |
| cd03222 | 177 | ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibi | 99.97 | |
| PRK13632 | 271 | cbiO cobalt transporter ATP-binding subunit; Provi | 99.97 | |
| PRK13636 | 283 | cbiO cobalt transporter ATP-binding subunit; Provi | 99.97 | |
| PRK11000 | 369 | maltose/maltodextrin transporter ATP-binding prote | 99.97 | |
| TIGR01188 | 302 | drrA daunorubicin resistance ABC transporter ATP-b | 99.97 | |
| cd03226 | 205 | ABC_cobalt_CbiO_domain2 Domain II of the ABC compo | 99.97 | |
| PRK13652 | 277 | cbiO cobalt transporter ATP-binding subunit; Provi | 99.97 | |
| PRK13648 | 269 | cbiO cobalt transporter ATP-binding subunit; Provi | 99.97 | |
| TIGR03005 | 252 | ectoine_ehuA ectoine/hydroxyectoine ABC transporte | 99.97 | |
| cd03245 | 220 | ABCC_bacteriocin_exporters ABC-type bacteriocin ex | 99.97 | |
| PRK13646 | 286 | cbiO cobalt transporter ATP-binding subunit; Provi | 99.97 | |
| PRK13643 | 288 | cbiO cobalt transporter ATP-binding subunit; Provi | 99.97 | |
| PRK10771 | 232 | thiQ thiamine transporter ATP-binding subunit; Pro | 99.97 | |
| PRK10575 | 265 | iron-hydroxamate transporter ATP-binding subunit; | 99.97 | |
| PRK13409 | 590 | putative ATPase RIL; Provisional | 99.97 | |
| PRK11308 | 327 | dppF dipeptide transporter ATP-binding subunit; Pr | 99.97 | |
| COG1134 | 249 | TagH ABC-type polysaccharide/polyol phosphate tran | 99.97 | |
| COG4136 | 213 | ABC-type uncharacterized transport system, ATPase | 99.97 | |
| PRK13640 | 282 | cbiO cobalt transporter ATP-binding subunit; Provi | 99.97 | |
| PRK10744 | 260 | pstB phosphate transporter ATP-binding protein; Pr | 99.97 | |
| PRK10938 | 490 | putative molybdenum transport ATP-binding protein | 99.97 | |
| TIGR00960 | 216 | 3a0501s02 Type II (General) Secretory Pathway (IIS | 99.97 | |
| PRK11629 | 233 | lolD lipoprotein transporter ATP-binding subunit; | 99.97 | |
| PRK11831 | 269 | putative ABC transporter ATP-binding protein YrbF; | 99.97 | |
| cd03300 | 232 | ABC_PotA_N PotA is an ABC-type transporter and the | 99.97 | |
| PRK10619 | 257 | histidine/lysine/arginine/ornithine transporter su | 99.97 | |
| cd03259 | 213 | ABC_Carb_Solutes_like ABC Carbohydrate and Solute | 99.97 | |
| PRK14267 | 253 | phosphate ABC transporter ATP-binding protein; Pro | 99.97 | |
| TIGR02769 | 265 | nickel_nikE nickel import ATP-binding protein NikE | 99.97 | |
| TIGR03258 | 362 | PhnT 2-aminoethylphosphonate ABC transport system, | 99.97 | |
| COG3842 | 352 | PotA ABC-type spermidine/putrescine transport syst | 99.97 | |
| PRK13633 | 280 | cobalt transporter ATP-binding subunit; Provisiona | 99.97 | |
| PRK14247 | 250 | phosphate ABC transporter ATP-binding protein; Pro | 99.97 | |
| PRK14242 | 253 | phosphate transporter ATP-binding protein; Provisi | 99.97 | |
| cd03265 | 220 | ABC_DrrA DrrA is the ATP-binding protein component | 99.97 | |
| PRK14251 | 251 | phosphate ABC transporter ATP-binding protein; Pro | 99.97 | |
| PRK13644 | 274 | cbiO cobalt transporter ATP-binding subunit; Provi | 99.97 | |
| PRK11124 | 242 | artP arginine transporter ATP-binding subunit; Pro | 99.97 | |
| PRK14268 | 258 | phosphate ABC transporter ATP-binding protein; Pro | 99.97 | |
| PRK09493 | 240 | glnQ glutamine ABC transporter ATP-binding protein | 99.97 | |
| COG1119 | 257 | ModF ABC-type molybdenum transport system, ATPase | 99.97 | |
| PRK11231 | 255 | fecE iron-dicitrate transporter ATP-binding subuni | 99.97 | |
| cd03268 | 208 | ABC_BcrA_bacitracin_resist The BcrA subfamily repr | 99.97 | |
| PRK11607 | 377 | potG putrescine transporter ATP-binding subunit; P | 99.97 | |
| PRK13537 | 306 | nodulation ABC transporter NodI; Provisional | 99.97 | |
| PRK14263 | 261 | phosphate ABC transporter ATP-binding protein; Pro | 99.97 | |
| cd03298 | 211 | ABC_ThiQ_thiamine_transporter ABC-type thiamine tr | 99.97 | |
| cd03236 | 255 | ABC_RNaseL_inhibitor_domain1 The ATPase domain 1 o | 99.97 | |
| PRK13651 | 305 | cobalt transporter ATP-binding subunit; Provisiona | 99.97 | |
| cd03255 | 218 | ABC_MJ0796_Lo1CDE_FtsE This family is comprised of | 99.97 | |
| TIGR00968 | 237 | 3a0106s01 sulfate ABC transporter, ATP-binding pro | 99.97 | |
| PRK14235 | 267 | phosphate transporter ATP-binding protein; Provisi | 99.97 | |
| cd03218 | 232 | ABC_YhbG The ABC transporters belonging to the Yhb | 99.97 | |
| cd03266 | 218 | ABC_NatA_sodium_exporter NatA is the ATPase compon | 99.97 | |
| PRK13634 | 290 | cbiO cobalt transporter ATP-binding subunit; Provi | 99.97 | |
| PRK14259 | 269 | phosphate ABC transporter ATP-binding protein; Pro | 99.97 | |
| TIGR00956 | 1394 | 3a01205 Pleiotropic Drug Resistance (PDR) Family p | 99.97 | |
| PRK11264 | 250 | putative amino-acid ABC transporter ATP-binding pr | 99.97 | |
| COG1136 | 226 | SalX ABC-type antimicrobial peptide transport syst | 99.97 | |
| PRK10982 | 491 | galactose/methyl galaxtoside transporter ATP-bindi | 99.97 | |
| PRK14245 | 250 | phosphate ABC transporter ATP-binding protein; Pro | 99.97 |
| >KOG0054 consensus Multidrug resistance-associated protein/mitoxantrone resistance protein, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-217 Score=2011.81 Aligned_cols=1136 Identities=46% Similarity=0.745 Sum_probs=1015.9
Q ss_pred CCCCccCh--hHHHHHHhHHHHHHhhccCCCCCCCCCCCCCCCchhhHHHHHHHHHHHhhcccccCCccchHHHHHHHHH
Q 037346 3 TPYSNAGL--FSIRSFSWMGSLIALGNKRTLDLEDVPRLDCSDSIYGVSPVLQNKLEAVVGVANRLTALRLAKVLFFSAW 80 (1156)
Q Consensus 3 ~p~~~~~~--~s~~~f~w~~~l~~~g~~~~l~~~dl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~ 80 (1156)
+|.+.++. +|+++|+|++|++++|+|++|+.+|+|+++++|+++.+.++|++.|+++.++ ..++|+++++++++||
T Consensus 123 ~~~~~~~~~~~S~~~f~W~~~l~~~g~k~~L~~~Dl~~l~~~d~s~~l~~~~~~~w~~~~~~--~~~~psl~~al~~~f~ 200 (1381)
T KOG0054|consen 123 NPLPEASAGFLSRLTFSWMTPLLRKGYKKPLELKDLWSLSPEDSSETLVKRLESLWEKELGR--SGKKPSLLRALLRTFG 200 (1381)
T ss_pred CcccccchhHHHHHHHHHHHHHHHhhccCCCChhhcccCChhhhhhHHHHHHHHHHHHHhcc--ccCCcHHHHHHHHHHH
Confidence 56677777 9999999999999999999999999999999999999999999999998732 2267899999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcccchhhHH-----------HHHHHHHHHHHHHHHHHHHHHHHHH
Q 037346 81 QEILFIAILALLYTLATYVGPYLIDNFVQYLNGRQAFEYEGYVL-----------CLSERHWFFQVQQFGIRFRATLFAM 149 (1156)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~p~ll~~~i~~~~~~~~~~~~g~~l-----------~~~~~~~~~~~~~~~~~~r~~l~~~ 149 (1156)
+.+++.+++.++...+.+++|.+++.+++++++++...+.|+++ +++.++|+|...+.|+|+|.++.+.
T Consensus 201 ~~~~~~~~~~~~~~~~~~~~P~lL~~li~~~~~~~~~~~~g~~~a~~lf~~~~l~~l~~~~~~~~~~~~g~r~R~al~~~ 280 (1381)
T KOG0054|consen 201 RTFLLSGIFLFLRDLAGFVGPLLLKKLILFFSEKRLPLNNGYLLAVLLFLASLLQSLLLHQYFFVSFRVGMRLRSALISA 280 (1381)
T ss_pred HHHHHHHHHHHHHHHHccccHHHHHHHHHHhcCCCcccchhHHHHHHHHHHHHHHHHHHhHHHHHHHhhhhhHHHHHHHH
Confidence 99999999999999999999999999999998764444444333 6678999999999999999999999
Q ss_pred HHHHHhcCCccccCCCCHHHHHHHHHHHHHH--------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 037346 150 IYNKGLTLSGQAKQGNTSGEIINLIAVDAER--------------------ALLILYKKLGLASIATLLATAIVMLANFP 209 (1156)
Q Consensus 150 i~~k~l~l~~~~~~~~~~g~i~nl~s~D~~~--------------------~~~ll~~~lg~~~l~~~~~~~~~~~~~~~ 209 (1156)
||+|.|+++.....+.++|+|+|+|++|+++ ++++||..+|+++++|++++++++|++.+
T Consensus 281 IY~K~L~ls~~~~~~~t~G~ivNlms~D~~ri~~~~~~~h~~w~~Plqi~~~l~lLy~~LG~sa~~G~~~~il~~p~n~~ 360 (1381)
T KOG0054|consen 281 IYRKALRLSNSARGETTVGEIVNLMSVDAQRLSDAACFLHLLWSAPLQIILALYLLYGLLGPSALAGVAVMVLLIPLNSF 360 (1381)
T ss_pred HHHhhhcCchhhccCCCcchhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHH
Confidence 9999999999988889999999999999999 67899999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 037346 210 LGRLREKFQDKFMETKDRRIKATSEILRNMRILKLQGWE---------LKKNETAWLKKSVYTEAMISFFCWGAPTFVSV 280 (1156)
Q Consensus 210 ~~~~~~~~~~~~~~~~d~r~~~~~e~l~~i~~IK~~~~e---------~r~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~ 280 (1156)
+++++.++|++.|+.+|+|++.++|+|+|||+||+|+|| .|++|++.+++..+..++..+++++.|+++++
T Consensus 361 ~a~~~~~~q~~~m~~~D~Rik~~nEiL~~IkviK~yaWE~~F~~~I~~~R~~El~~lrk~~~~~~~~~~~~~~~p~lv~~ 440 (1381)
T KOG0054|consen 361 LAKKIAKFQKRLMKRKDERIKLMNEILNGIKVIKLYAWEKPFLKKIEDLRQKELKLLRKSAYLSALNSFLNFFSPVLVSV 440 (1381)
T ss_pred HHHHHHHHHHHHhhhhhHHHHHHHHHHhhhHhhhhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999 89999999999999999999999999999999
Q ss_pred HHHHHHH-HhCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCccccccCCCCCCCccEE
Q 037346 281 VTFGSCI-LLGIPLESGMILSALTTFKILQEPIYYLPESISMMIQAKVPLDRIASFLCLEGLQTDVLEKMPRGNSDTAIE 359 (1156)
Q Consensus 281 ~~f~~~~-~~~~~lt~~~~ft~l~~~~~l~~pl~~l~~~~~~~~~a~~s~~Ri~~fl~~~~~~~~~~~~~~~~~~~~~i~ 359 (1156)
++|++|. ..++.+|+..+|+++++|++++.|+..+|..+..+.++.+|++|+++||..+|.+.......+....+..++
T Consensus 441 ~tF~~~v~~~~~~lt~~~aF~slalfniLr~pl~~~P~~i~~~vqa~VS~~Ri~~fl~~~e~~~~~~~~~~~~~~~~~i~ 520 (1381)
T KOG0054|consen 441 VTFVVFVLLLGNLLTASTAFTSLALFNILRFPLFMLPSVISQLVQAKVSLKRLKEFLLSEELDPDSVERSPDEAGENAIE 520 (1381)
T ss_pred HHHHHHhhccCccccHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccCccccccCCCCCCCceEE
Confidence 9999999 678899999999999999999999999999999999999999999999999887665433223334456799
Q ss_pred EeeeEEEeCCCCCCCccccceEEeeCCeEEEEEcCCCCChHHHHHHHhCCCCCCCcEEEEcCeEEEEecCCcCCCccHHH
Q 037346 360 IIDGSFSWDFSSPNPTLRNINLKVFHGMRVAVCGTVGSGKSSCLSCILGGVPKESGIIRLCGTKAYVAQSPWIQSGKIEE 439 (1156)
Q Consensus 360 ~~~~~f~~~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKSTll~~i~g~~~~~~G~i~~~g~~~~v~Q~~~~~~~ti~e 439 (1156)
++|++|+|+...+.+.|+||||+|++|+++||||++||||||||.+|+||++..+|++.++|.+|||||+||++++||||
T Consensus 521 i~~~sfsW~~~~~~~tL~dIn~~i~~G~lvaVvG~vGsGKSSLL~AiLGEm~~~sG~v~v~gsiaYv~Q~pWI~ngTvre 600 (1381)
T KOG0054|consen 521 IKNGSFSWDSESPEPTLKDINFEIKKGQLVAVVGPVGSGKSSLLSAILGEMPKLSGSVAVNGSVAYVPQQPWIQNGTVRE 600 (1381)
T ss_pred EeeeeEecCCCCCcccccceeEEecCCCEEEEECCCCCCHHHHHHHHhcCcccccceEEEcCeEEEeccccHhhCCcHHH
Confidence 99999999875556799999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhcCCCCCHHHHHHHHHHhCCchhhhhCCCCCccccccCCCCCCHHHHHHHHHHHhhccCCCeeeeeCCCCCcCHHHHH
Q 037346 440 NILFGKEMDRERYERVLEACSLKKDLEVLPFGDQTIIGERGINLSGGQKQRIQIARPLYQDADIFLLDDPFSPVDDHTGA 519 (1156)
Q Consensus 440 ni~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~t~v~~~g~~LSgGqkqRi~lAral~~~~~illlDep~s~lD~~~~~ 519 (1156)
||+||.++|++||++|+++|+|++|++.+|.||.|+|||+|.+|||||||||+||||+|+|+||||||||+||||+|+.+
T Consensus 601 NILFG~~~d~~rY~~Vi~aC~L~~Dle~Lp~GD~TeIGErGinLSGGQKqRIsLARAVY~~adIYLLDDplSAVDahvg~ 680 (1381)
T KOG0054|consen 601 NILFGSPYDEERYDKVIKACALKKDLEILPFGDLTEIGERGINLSGGQKQRISLARAVYQDADIYLLDDPLSAVDAHVGK 680 (1381)
T ss_pred hhhcCccccHHHHHHHHHHccCHhHHhhcCCCCcceecCCccCCcHhHHHHHHHHHHHhccCCEEEEcCcchhhhHhhhH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHh--cCCCEEEEEccCCCccccCCEEEEEeCCeEEEccChHHHHhcCcchHHHHHhhhhhccCCCCCCCCCccc
Q 037346 520 HLFKFCWV--SSSKTVIYATHQVEFLPAADLILVIKDGKITQAGKYSDILNSGTDFMELVGAHKQALSGLDSIDRGPVSE 597 (1156)
Q Consensus 520 ~i~~~~~~--~~~~tvi~vtH~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 597 (1156)
+||+.|+. +++||+|+|||++++++.||+|++|+||+|.+.|+|+|+++.+..+.++........+.. .+..+...
T Consensus 681 ~if~~ci~~~L~~KT~ILVTHql~~L~~ad~Iivl~~G~I~~~Gty~el~~~~~~~~~l~~~~~~~~~~~--~~~~~~~~ 758 (1381)
T KOG0054|consen 681 HIFEECIRGLLRGKTVILVTHQLQFLPHADQIIVLKDGKIVESGTYEELLKSGGDFAELAHEEESEQEEE--ASEKDLES 758 (1381)
T ss_pred HHHHHHHHhhhcCCEEEEEeCchhhhhhCCEEEEecCCeEecccCHHHHHhcchhHHHHhhccchhhccc--cccccccc
Confidence 99999986 688999999999999999999999999999999999999988888877732221111110 00000000
Q ss_pred ccccccCCCCCCCcccchhcccccCCCCcccccCccCcchhHHHHhcCcccHHHHHHHHHHhccchHHHHHHHHHHHHHH
Q 037346 598 RKSINKENDGTSTTNEIVNKEENKNFQSDDEAALPKGQLVQEEEREKGKVGFSVYWKYMTTAYGGVLVPFILLAQIIFQI 677 (1156)
Q Consensus 598 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~g~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~ 677 (1156)
.......+. +. .... ....+..........+..++|+++.|.++|++|+.|+++.+++..+++++++.++.++
T Consensus 759 ~~~~~~~~~-----~~-~~~~-~~~~~~~~~~~~~~~~~~~~ee~~~G~v~~~vY~~Y~~a~~g~~~~~~~~~~~v~~~~ 831 (1381)
T KOG0054|consen 759 GESSRESES-----RS-LESL-SSEEEKSKDEKEEEDKLVQEEERETGKVSWSVYKKYIKAAGGFLLVLLILLLFVLTQV 831 (1381)
T ss_pred cccccchhh-----hh-hhhh-cccccccccccchhhHHHHHHHHhcCEeeHHHHHHHHHhcccHHHHHHHHHHHHHHHH
Confidence 000000000 00 0000 0000000111111344566778899999999999999997777777777888899999
Q ss_pred HHhhhhhhhhhccccccccCCC-CCchhhHHHHHH------------------HHHHHHHHHHHHHHHHhcccccccccc
Q 037346 678 FQIGSNYWMAWATPVAKDVNPA-VGASTLIIVYVG------------------AGYKTATQLFNKMHVCIFRAPMYFFDS 738 (1156)
Q Consensus 678 ~~~~~~~~l~~~~~~~~~~~~~-~~~~~~~~~~~~------------------~~~~~~~~l~~~l~~~ll~~p~~ff~~ 738 (1156)
+..+.++|+++|++........ .....|+++|.. .++++++.||++|+++++|+||+|||+
T Consensus 832 ~~~~~~~WLs~W~~~~~~~~~~~~~~~~~~~vY~~l~~~~~~~~~~rs~~~~~~~l~aS~~Lh~~ml~~Ilrapm~FFdt 911 (1381)
T KOG0054|consen 832 LQIASNYWLSYWTDDGEDNGTTTVSTSFYLGVYALLGVASSLLTLLRSFLFAKGGLKASRKLHDKLLNSILRAPMSFFDT 911 (1381)
T ss_pred HHHHHHHHHHHhcCCcccccccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcchhcCC
Confidence 9999999999998654322211 234455555543 678999999999999999999999999
Q ss_pred ccccchhhhhcccccccchhhhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 037346 739 TPSGRILNRVSENVKWADQSAADMDIPYDIGAFAFSMIQLLGIIVVMSLVAWQVLIVFVPVIATFIWYQQYYITSTRELS 818 (1156)
Q Consensus 739 ~~~G~il~R~s~d~~~~d~~~~d~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~ 818 (1156)
||+|||+|||+ +|+..+|..+|..+..++..++.+++++++++++.|+++++++|+.+++++++++|.+++|+++
T Consensus 912 TP~GRILNRFS-----kD~~~vD~~Lp~~~~~~~~~~~~~l~~~~vi~~~~P~fli~~~pl~v~~~~~~~~Y~~tsReLk 986 (1381)
T KOG0054|consen 912 TPTGRILNRFS-----KDIDTVDVLLPFTLEFFLQSLLNVLGILVVISYVTPWFLIAIIPLGVIYYFVQRYYLATSRELK 986 (1381)
T ss_pred CCccchhhhcc-----cchHHHHHhhHHHHHHHHHHHHHHHHHHHHhhHHhHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Confidence 99999999999 9999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhHhhChHHHHHHhhccchhhhhhcchHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Q 037346 819 RLIGVCKAPVIQQFSETISGSTTIRSLDQELRFRDTNMKLIDEYSRPKFHIAGAMEWLRFCIDMLSSITFAFSLAFLISV 898 (1156)
Q Consensus 819 ~~~~~~~s~~~~~~~e~l~Gi~tIra~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 898 (1156)
|+++.+|||+++|++|+++|+.|||||++|++|.+++.+++|.+.++.|....+++|++.|+++++.+++.+++.+++..
T Consensus 987 RLesitRSPi~sh~~Etl~GlsTIRAf~~~~rf~~~~~~~~D~~~~~~f~~~~a~RWla~Rle~ig~~~v~~~al~~vl~ 1066 (1381)
T KOG0054|consen 987 RLESITRSPIYSHFSETLQGLSTIRAFGKEERFIQENDELIDENSRAFFLSISANRWLAVRLELLGNLVVLIAALFAVLL 1066 (1381)
T ss_pred HhhhcccchHHHhHHHHhcCcceeeeccccHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999888877776655
Q ss_pred CCCccchH-----------------------HHHHHHhHHHHHHHHhhcCCCCCcccccCCCCCCCCCCCCeEEEEEEEE
Q 037346 899 PNGIIHPY-----------------------KNLERKIISVERILQCACIPSEPALVIEATKPNNSRPSHGEVNIRHLQV 955 (1156)
Q Consensus 899 ~~~~~~~~-----------------------~~~~~~~~s~~Ri~~~~~~~~e~~~~~~~~~~~~~~p~~g~I~~~~Vsf 955 (1156)
..+..+++ +++|+.|+|+|||.+|.++|+|++...+...|+++||.+|+|+|+|+++
T Consensus 1067 ~~~~~~~g~vGLslsyal~lt~~l~~~vR~~~elEn~m~SVERv~eY~~~~~E~p~~~~~~~pp~~WP~~G~I~f~~~~~ 1146 (1381)
T KOG0054|consen 1067 PSGLISPGLVGLSLSYALQLTGLLQWLVRQSSELENNMVSVERVLEYTDIPSEAPLEIEESRPPPSWPSKGEIEFEDLSL 1146 (1381)
T ss_pred cCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhhHHHHHhcCCCCCCCCCcCCCCCCCCCCCCeEEEEEeEE
Confidence 44322222 7899999999999999999999666555555889999999999999999
Q ss_pred EEcCCCCceee---------------CCCCCCHHHHHHHHhhcccCCCceEEEcCeeCCCCChHHHhhcCeeeccccccc
Q 037346 956 RYAPNLPLVLR---------------GRTGSGKSTLIQTLFRIVESTAGHILIDGKDISLIGLHDLRTRLSIIPQDPTMF 1020 (1156)
Q Consensus 956 ~Y~~~~~~vL~---------------G~SGsGKSTL~~lL~rl~~p~~G~I~idG~di~~i~~~~LR~~i~~VpQdp~LF 1020 (1156)
+|+|+.|+||+ ||||||||||+++|+|+.+|.+|+|.|||+||+++++++||+++++|||||+||
T Consensus 1147 RYrp~lp~VLk~is~~I~p~eKVGIVGRTGaGKSSL~~aLFRl~e~~~G~I~IDgvdI~~igL~dLRsrlsIIPQdPvLF 1226 (1381)
T KOG0054|consen 1147 RYRPNLPLVLKGISFTIKPGEKVGIVGRTGAGKSSLILALFRLVEPAEGEILIDGVDISKIGLHDLRSRLSIIPQDPVLF 1226 (1381)
T ss_pred EeCCCCcchhcCceEEEcCCceEEEeCCCCCCHHHHHHHHHHhcCccCCeEEEcCeecccccHHHHHhcCeeeCCCCcee
Confidence 99998887665 999999999999999999999999999999999999999999999999999999
Q ss_pred cccchhccCCCCCCCHHHHHHHHHHcCCChHHHhhcCCcccc------------------ccccccCCCEEEEecCCcCC
Q 037346 1021 EGTTRSNLDPLEEHADEQIWEALDKCQLGDEVRKKKGKLDSQ------------------GRVLLKKSKVLVLDEATASV 1082 (1156)
Q Consensus 1021 ~gTIr~Nl~~~~~~~deei~~al~~~~l~~~i~~lp~gl~s~------------------ARALLr~~~ILiLDEaTS~L 1082 (1156)
+||+|.||||+++++|+|||+||++|+|+++|+++|+|||+. ||||||++||||||||||++
T Consensus 1227 sGTvR~NLDPf~e~sD~~IW~ALe~~~Lk~~v~~~p~~Ld~~v~egG~N~SvGQRQLlCLARALLr~skILvLDEATAsV 1306 (1381)
T KOG0054|consen 1227 SGTVRFNLDPFDEYSDDEIWEALERCQLKDVVSSLPGGLDSEVSEGGENFSVGQRQLLCLARALLRKSKILVLDEATASV 1306 (1381)
T ss_pred cCccccccCcccccCHHHHHHHHHHhChHHHHhhCCcCCCceecCCCccCChHHHHHHHHHHHHhccCCEEEEecccccC
Confidence 999999999999999999999999999999999999999976 89999999999999999999
Q ss_pred CHHHHHHHHHHHHHhcCCceEEEeecCcccccccCEEEEEeCcEEeeecChhHHhcCCCChHHHHHHHHhcc
Q 037346 1083 DTATDNQIQQTLRQHFSDCTVVTIAHRITSVLDSAMVLLLNHGLIKEYDSPTKLLENKSSSFAQLVAEYTSS 1154 (1156)
Q Consensus 1083 D~~te~~I~~~l~~~~~~~TvI~IaHrl~ti~~~D~I~Vl~~G~IvE~G~~~eLl~~~~g~f~~l~~~~~~~ 1154 (1156)
|++||..||++||+.|++||||+||||++||.|||||+|||+|+|+|+|+|++|+++++|.|++++.+....
T Consensus 1307 D~~TD~lIQ~tIR~~F~dcTVltIAHRl~TVmd~DrVlVld~G~v~EfdsP~~Ll~~~~S~f~~~l~~~~~~ 1378 (1381)
T KOG0054|consen 1307 DPETDALIQKTIREEFKDCTVLTIAHRLNTVMDSDRVLVLDAGRVVEFDSPAELLSDKDSLFSSLLKEAALS 1378 (1381)
T ss_pred ChHHHHHHHHHHHHHhcCCeEEEEeeccchhhhcCeEEEeeCCeEeecCChHHHHhCCcchHHHHHHHHHHh
Confidence 999999999999999999999999999999999999999999999999999999999999999888876543
|
|
| >PLN03130 ABC transporter C family member; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.3e-176 Score=1738.12 Aligned_cols=1130 Identities=34% Similarity=0.578 Sum_probs=953.7
Q ss_pred CCCCCccChhHHHHHHhHHHHHHhhccCCCCCCCCCCCCCCCchhhHHHHHHHHHHHhhcccccCCccchHHHHHHHHHH
Q 037346 2 VTPYSNAGLFSIRSFSWMGSLIALGNKRTLDLEDVPRLDCSDSIYGVSPVLQNKLEAVVGVANRLTALRLAKVLFFSAWQ 81 (1156)
Q Consensus 2 ~~p~~~~~~~s~~~f~w~~~l~~~g~~~~l~~~dl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~ 81 (1156)
.+||+++|+|||++|+|++|++++|++++|+.+|||+++++++++.+.++|++.|+++. ++++++++++++++|++
T Consensus 226 ~~pe~~a~~~s~~~F~W~~pl~~~g~~~~L~~~Dl~~l~~~~~~~~~~~~~~~~w~~~~----~~~~~~l~~~l~~~~~~ 301 (1622)
T PLN03130 226 ICPERHANIFSRIFFGWMTPLMQLGYKRPLTEKDVWKLDTWDQTETLYRSFQKCWDEEL----KKPKPWLLRALNNSLGG 301 (1622)
T ss_pred CCcccccCHHHHHHHHHHHHHHHHHhcCCCChhhccCCChhhhHHHHHHHHHHHHHHHh----ccCCchHHHHHHHHHHH
Confidence 37999999999999999999999999999999999999999999999999999999875 23568999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcccchhhHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 037346 82 EILFIAILALLYTLATYVGPYLIDNFVQYLNGRQAFEYEGYVL-----------CLSERHWFFQVQQFGIRFRATLFAMI 150 (1156)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~p~ll~~~i~~~~~~~~~~~~g~~l-----------~~~~~~~~~~~~~~~~~~r~~l~~~i 150 (1156)
.++.++++.++..++.+++|++++.+++++.+++. .+.++++ +++.++|.+...+++.++|..++..+
T Consensus 302 ~~~~~~~~~i~~~~~~~~~P~ll~~li~~v~~~~~-~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ir~~L~~~i 380 (1622)
T PLN03130 302 RFWLGGFFKIGNDLSQFVGPLLLNLLLESMQNGEP-AWIGYIYAFSIFVGVVLGVLCEAQYFQNVMRVGFRLRSTLVAAV 380 (1622)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCc-chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999864331 1112111 22345566667899999999999999
Q ss_pred HHHHhcCCccccCCCCHHHHHHHHHHHHHH--------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 037346 151 YNKGLTLSGQAKQGNTSGEIINLIAVDAER--------------------ALLILYKKLGLASIATLLATAIVMLANFPL 210 (1156)
Q Consensus 151 ~~k~l~l~~~~~~~~~~g~i~nl~s~D~~~--------------------~~~ll~~~lg~~~l~~~~~~~~~~~~~~~~ 210 (1156)
|+|.++++...+++.++|+++|+|++|+++ +++++++.+|+++++|+++++++++++..+
T Consensus 381 ~~k~L~l~~~~~~~~~~G~ivnl~s~Dv~~i~~~~~~l~~l~~~pl~ii~~~~lL~~~lg~~~l~g~~v~~l~~~l~~~~ 460 (1622)
T PLN03130 381 FRKSLRLTHEGRKKFTSGKITNLMTTDAEALQQICQQLHTLWSAPFRIIIAMVLLYQQLGVASLIGSLMLVLMFPIQTFI 460 (1622)
T ss_pred HHHHhcCChhhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999888889999999999999998 346678889999998888888888888889
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 037346 211 GRLREKFQDKFMETKDRRIKATSEILRNMRILKLQGWE---------LKKNETAWLKKSVYTEAMISFFCWGAPTFVSVV 281 (1156)
Q Consensus 211 ~~~~~~~~~~~~~~~d~r~~~~~e~l~~i~~IK~~~~e---------~r~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 281 (1156)
.+...+.+++.++.+|+|.+.++|+++|||+||+|+|| .|+.|++..++..+..++..++....|.++.++
T Consensus 461 ~~~~~~~~~~~~~~~d~r~~~~~E~L~gi~~IK~~~~E~~~~~~i~~~r~~e~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 540 (1622)
T PLN03130 461 ISKMQKLTKEGLQRTDKRIGLMNEVLAAMDTVKCYAWENSFQSKVQTVRDDELSWFRKAQLLSAFNSFILNSIPVLVTVV 540 (1622)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999 577788877777766666665556667777888
Q ss_pred HHHHHHHhCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCccccccCCCCCCCccEEEe
Q 037346 282 TFGSCILLGIPLESGMILSALTTFKILQEPIYYLPESISMMIQAKVPLDRIASFLCLEGLQTDVLEKMPRGNSDTAIEII 361 (1156)
Q Consensus 282 ~f~~~~~~~~~lt~~~~ft~l~~~~~l~~pl~~l~~~~~~~~~a~~s~~Ri~~fl~~~~~~~~~~~~~~~~~~~~~i~~~ 361 (1156)
+|++|.+.++.+|++.+|+++++++.+..|+..+|..+..+.++++|++||++|++.++...... .+.......|+++
T Consensus 541 ~fg~~~~~~g~Lt~g~vf~~l~l~~~l~~pl~~l~~~i~~~~~a~~s~~RI~~~L~~~e~~~~~~--~~~~~~~~~I~~~ 618 (1622)
T PLN03130 541 SFGVFTLLGGDLTPARAFTSLSLFAVLRFPLFMLPNLITQAVNANVSLKRLEELLLAEERVLLPN--PPLEPGLPAISIK 618 (1622)
T ss_pred HHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcccccccC--CcccCCCCceEEE
Confidence 99999999999999999999999999999999999999999999999999999998765422110 1111122469999
Q ss_pred eeEEEeCCCCCCCccccceEEeeCCeEEEEEcCCCCChHHHHHHHhCCCCCCC-cEEEEcCeEEEEecCCcCCCccHHHH
Q 037346 362 DGSFSWDFSSPNPTLRNINLKVFHGMRVAVCGTVGSGKSSCLSCILGGVPKES-GIIRLCGTKAYVAQSPWIQSGKIEEN 440 (1156)
Q Consensus 362 ~~~f~~~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKSTll~~i~g~~~~~~-G~i~~~g~~~~v~Q~~~~~~~ti~en 440 (1156)
|++|+|+..+++++|+|+||+|++|++++|+||+|||||||+++|+|+++|++ |+|.+.|+++||+|+||+|++|||||
T Consensus 619 nvsf~y~~~~~~~vL~~inl~i~~Ge~vaIvG~sGSGKSTLl~lLlG~~~~~~GG~I~l~~~Iayv~Q~p~LfngTIreN 698 (1622)
T PLN03130 619 NGYFSWDSKAERPTLSNINLDVPVGSLVAIVGSTGEGKTSLISAMLGELPPRSDASVVIRGTVAYVPQVSWIFNATVRDN 698 (1622)
T ss_pred eeEEEccCCCCCceeeceeEEecCCCEEEEECCCCCCHHHHHHHHHHhhccCCCceEEEcCeEEEEcCccccCCCCHHHH
Confidence 99999975445689999999999999999999999999999999999999999 99999999999999999999999999
Q ss_pred hhcCCCCCHHHHHHHHHHhCCchhhhhCCCCCccccccCCCCCCHHHHHHHHHHHhhccCCCeeeeeCCCCCcCHHHHHH
Q 037346 441 ILFGKEMDRERYERVLEACSLKKDLEVLPFGDQTIIGERGINLSGGQKQRIQIARPLYQDADIFLLDDPFSPVDDHTGAH 520 (1156)
Q Consensus 441 i~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~t~v~~~g~~LSgGqkqRi~lAral~~~~~illlDep~s~lD~~~~~~ 520 (1156)
|+||.++++++|++++++|+|.+|++.+|+||+|.|||+|.+|||||||||+||||+|++||||||||||||||++++++
T Consensus 699 I~fg~~~d~e~y~~vl~a~~L~~di~~LP~Gd~T~IGe~G~~LSGGQKQRIaLARAly~~~~IlLLDEptSALD~~~~~~ 778 (1622)
T PLN03130 699 ILFGSPFDPERYERAIDVTALQHDLDLLPGGDLTEIGERGVNISGGQKQRVSMARAVYSNSDVYIFDDPLSALDAHVGRQ 778 (1622)
T ss_pred HhCCCcccHHHHHHHHHHhCcHHHHHhCCCcccccccCCCCCCCHHHHHHHHHHHHHhCCCCEEEECCCccccCHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHh--cCCCEEEEEccCCCccccCCEEEEEeCCeEEEccChHHHHhcCcchHHHHHhhhhhccCCCCCCCCCcccc
Q 037346 521 LFKFCWV--SSSKTVIYATHQVEFLPAADLILVIKDGKITQAGKYSDILNSGTDFMELVGAHKQALSGLDSIDRGPVSER 598 (1156)
Q Consensus 521 i~~~~~~--~~~~tvi~vtH~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 598 (1156)
+++.++. .+++|+|+|||+++.++.||+|++|++|+++++|+++++++..+.|.++...+....+.... +..+ ..
T Consensus 779 I~~~~l~~~l~~kTvIlVTH~l~~l~~aD~Ii~L~~G~i~e~Gt~~eL~~~~~~~~~l~~~~~~~~~~~~~-~~~~--~~ 855 (1622)
T PLN03130 779 VFDKCIKDELRGKTRVLVTNQLHFLSQVDRIILVHEGMIKEEGTYEELSNNGPLFQKLMENAGKMEEYVEE-NGEE--ED 855 (1622)
T ss_pred HHHHHhhHHhcCCEEEEEECCHhHHHhCCEEEEEeCCEEEEeCCHHHHHhcchhHHHHHHhcccccccccc-cccc--cc
Confidence 9988765 47899999999999999999999999999999999999998777777776543211100000 0000 00
Q ss_pred cccccCCCCCCCcccchhcccccCCCCcccccCccCcchhHHHHhcCcccHHHHHHHHHHhccchHHHHHHHHHHHHHHH
Q 037346 599 KSINKENDGTSTTNEIVNKEENKNFQSDDEAALPKGQLVQEEEREKGKVGFSVYWKYMTTAYGGVLVPFILLAQIIFQIF 678 (1156)
Q Consensus 599 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~g~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~ 678 (1156)
................. ..................+|+++.|.+++.+|+.|+++.++...+.+++++.++.+++
T Consensus 856 ~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~e~~~~g~v~~~vy~~Y~~~~g~~~~~~~~~~~~~~~~~~ 930 (1622)
T PLN03130 856 DQTSSKPVANGNANNLK-----KDSSSKKKSKEGKSVLIKQEERETGVVSWKVLERYKNALGGAWVVMILFLCYVLTEVF 930 (1622)
T ss_pred ccccccccccccccccc-----ccccccccccccchhhhhHHHHhcCccCHHHHHHHHHHhccHHHHHHHHHHHHHHHHH
Confidence 00000000000000000 0000000000011223456778889999999999999876655555556666777888
Q ss_pred HhhhhhhhhhccccccccCCCCCchhhHHHHHH------------------HHHHHHHHHHHHHHHHhcccccccccccc
Q 037346 679 QIGSNYWMAWATPVAKDVNPAVGASTLIIVYVG------------------AGYKTATQLFNKMHVCIFRAPMYFFDSTP 740 (1156)
Q Consensus 679 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~------------------~~~~~~~~l~~~l~~~ll~~p~~ff~~~~ 740 (1156)
..+.++|+++|.+...... .....++++|++ .+.+++.++|++++++++++|++||+++|
T Consensus 931 ~~~~~~wl~~w~~~~~~~~--~~~~~~~~i~~~l~~~~~i~~~~~~~~~~~~~~~~~~~L~~~l~~~ll~~p~~ffd~~~ 1008 (1622)
T PLN03130 931 RVSSSTWLSEWTDQGTPKT--HGPLFYNLIYALLSFGQVLVTLLNSYWLIMSSLYAAKRLHDAMLGSILRAPMSFFHTNP 1008 (1622)
T ss_pred HHHHHHHHHHHHhccccCC--CchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHhccCC
Confidence 8899999998875322111 111222222221 56789999999999999999999999999
Q ss_pred ccchhhhhcccccccchhhhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 037346 741 SGRILNRVSENVKWADQSAADMDIPYDIGAFAFSMIQLLGIIVVMSLVAWQVLIVFVPVIATFIWYQQYYITSTRELSRL 820 (1156)
Q Consensus 741 ~G~il~R~s~d~~~~d~~~~d~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 820 (1156)
+|+|+|||+ .|+..+|..++..+..++..++.+++.++++++++|..+++++|++++++++..+|.+..|++++.
T Consensus 1009 ~G~IlnR~s-----~Di~~id~~l~~~~~~~~~~~~~~i~~~i~i~~~~~~~~~~~~pl~~~~~~~~~~~~~~~r~~~r~ 1083 (1622)
T PLN03130 1009 LGRIINRFA-----KDLGDIDRNVAVFVNMFLGQIFQLLSTFVLIGIVSTISLWAIMPLLVLFYGAYLYYQSTAREVKRL 1083 (1622)
T ss_pred chHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999 999999999999999999999999999988888888777778888777788888899999999999
Q ss_pred HhHhhChHHHHHHhhccchhhhhhcchHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Q 037346 821 IGVCKAPVIQQFSETISGSTTIRSLDQELRFRDTNMKLIDEYSRPKFHIAGAMEWLRFCIDMLSSITFAFSLAFLISVPN 900 (1156)
Q Consensus 821 ~~~~~s~~~~~~~e~l~Gi~tIra~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 900 (1156)
+..+++|+++++.|+++|+.|||+|+.+++|.+.+.+..+...+..+.....++|++.++++++.+++.+...+.+....
T Consensus 1084 ~~~~~s~~~~~~~Etl~Gi~tIraf~~~~~f~~~~~~~~~~~~~~~~~~~~~~~wl~~~l~~~~~~~i~~~~~~~v~~~~ 1163 (1622)
T PLN03130 1084 DSITRSPVYAQFGEALNGLSTIRAYKAYDRMAEINGRSMDNNIRFTLVNMSSNRWLAIRLETLGGLMIWLTASFAVMQNG 1163 (1622)
T ss_pred HHHhcchHHHHHHHHhCCHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc
Confidence 99999999999999999999999999999999999999999999999888899999998888776554433322221110
Q ss_pred C---------c------------------cchHHHHHHHhHHHHHHHHhhcCCCCCcccccCCCCCCCCCCCCeEEEEEE
Q 037346 901 G---------I------------------IHPYKNLERKIISVERILQCACIPSEPALVIEATKPNNSRPSHGEVNIRHL 953 (1156)
Q Consensus 901 ~---------~------------------~~~~~~~~~~~~s~~Ri~~~~~~~~e~~~~~~~~~~~~~~p~~g~I~~~~V 953 (1156)
. . ......++..+++++|+.+|.+.|+|++...+...++..||..|.|+|+||
T Consensus 1164 ~~~~~~~~~~~~G~~ls~~~~~~~~l~~l~~~~~~~e~~~~sveRi~e~~~~~~E~~~~~~~~~~~~~wp~~g~I~f~nV 1243 (1622)
T PLN03130 1164 RAENQAAFASTMGLLLSYALNITSLLTAVLRLASLAENSLNAVERVGTYIDLPSEAPLVIENNRPPPGWPSSGSIKFEDV 1243 (1622)
T ss_pred ccccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcccccccCCCCCCCCCCCCcEEEEEE
Confidence 0 0 001145688999999999999988886533233344567999999999999
Q ss_pred EEEEcCCCCc---------------eeeCCCCCCHHHHHHHHhhcccCCCceEEEcCeeCCCCChHHHhhcCeeeccccc
Q 037346 954 QVRYAPNLPL---------------VLRGRTGSGKSTLIQTLFRIVESTAGHILIDGKDISLIGLHDLRTRLSIIPQDPT 1018 (1156)
Q Consensus 954 sf~Y~~~~~~---------------vL~G~SGsGKSTL~~lL~rl~~p~~G~I~idG~di~~i~~~~LR~~i~~VpQdp~ 1018 (1156)
+|+|+++.++ +|+||||||||||+++|+|+|+|++|+|+|||+||+++++++||++|++|||||+
T Consensus 1244 sf~Y~~~~~~VL~~is~~I~~GekVaIVGrSGSGKSTLl~lL~rl~~p~~G~I~IDG~dI~~i~l~~LR~~IsiVpQdp~ 1323 (1622)
T PLN03130 1244 VLRYRPELPPVLHGLSFEISPSEKVGIVGRTGAGKSSMLNALFRIVELERGRILIDGCDISKFGLMDLRKVLGIIPQAPV 1323 (1622)
T ss_pred EEEeCCCCCceecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCcCCCCCceEEECCEecccCCHHHHHhccEEECCCCc
Confidence 9999876543 4559999999999999999999999999999999999999999999999999999
Q ss_pred cccccchhccCCCCCCCHHHHHHHHHHcCCChHHHhhcCCcccc------------------ccccccCCCEEEEecCCc
Q 037346 1019 MFEGTTRSNLDPLEEHADEQIWEALDKCQLGDEVRKKKGKLDSQ------------------GRVLLKKSKVLVLDEATA 1080 (1156)
Q Consensus 1019 LF~gTIr~Nl~~~~~~~deei~~al~~~~l~~~i~~lp~gl~s~------------------ARALLr~~~ILiLDEaTS 1080 (1156)
||+||||+||+|+++++|+|+|+||++|+++++|.++|+|||+. ||||||+|+|||||||||
T Consensus 1324 LF~GTIreNLd~~~~~tdeei~~Al~~a~l~~~I~~lp~GLdt~Vge~G~nLSgGQrQrlaLARALLr~p~ILILDEATS 1403 (1622)
T PLN03130 1324 LFSGTVRFNLDPFNEHNDADLWESLERAHLKDVIRRNSLGLDAEVSEAGENFSVGQRQLLSLARALLRRSKILVLDEATA 1403 (1622)
T ss_pred cccccHHHHhCcCCCCCHHHHHHHHHHcCcHHHHHhCccccCccccCCCCCCCHHHHHHHHHHHHHHcCCCEEEEECCCC
Confidence 99999999999999999999999999999999999999999975 899999999999999999
Q ss_pred CCCHHHHHHHHHHHHHhcCCceEEEeecCcccccccCEEEEEeCcEEeeecChhHHhcCCCChHHHHHHHHhc
Q 037346 1081 SVDTATDNQIQQTLRQHFSDCTVVTIAHRITSVLDSAMVLLLNHGLIKEYDSPTKLLENKSSSFAQLVAEYTS 1153 (1156)
Q Consensus 1081 ~LD~~te~~I~~~l~~~~~~~TvI~IaHrl~ti~~~D~I~Vl~~G~IvE~G~~~eLl~~~~g~f~~l~~~~~~ 1153 (1156)
+||++||+.||++|++.+++||+|+||||++|+++||||+|||+|+|+|+|+|+||+++++|.|++|+++++.
T Consensus 1404 aLD~~Te~~Iq~~I~~~~~~~TvI~IAHRL~tI~~~DrIlVLd~G~IvE~Gt~~eLl~~~~g~f~~L~~~~~~ 1476 (1622)
T PLN03130 1404 AVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIIDCDRILVLDAGRVVEFDTPENLLSNEGSAFSKMVQSTGA 1476 (1622)
T ss_pred CCCHHHHHHHHHHHHHHCCCCEEEEEeCChHHHHhCCEEEEEECCEEEEeCCHHHHHhCCCCHHHHHHHHcCh
Confidence 9999999999999999999999999999999999999999999999999999999998778999999997664
|
|
| >PLN03232 ABC transporter C family member; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-172 Score=1709.94 Aligned_cols=1128 Identities=33% Similarity=0.570 Sum_probs=945.4
Q ss_pred CCCCCccChhHHHHHHhHHHHHHhhccCCCCCCCCCCCCCCCchhhHHHHHHHHHHHhhcccccCCccchHHHHHHHHHH
Q 037346 2 VTPYSNAGLFSIRSFSWMGSLIALGNKRTLDLEDVPRLDCSDSIYGVSPVLQNKLEAVVGVANRLTALRLAKVLFFSAWQ 81 (1156)
Q Consensus 2 ~~p~~~~~~~s~~~f~w~~~l~~~g~~~~l~~~dl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~ 81 (1156)
.+||+++|+|||++|+|++|++++|++++|+.+|||+++++++++.++++|++.|+++. +.++++++++++++|++
T Consensus 226 ~~pe~~a~~~s~~~f~w~~pl~~~g~~~~L~~~dl~~l~~~~~~~~~~~~~~~~w~~~~----~~~~~~l~~~l~~~~~~ 301 (1495)
T PLN03232 226 ICPERYASIFSRIYFSWMTPLMQLGYRKPITEKDVWQLDQWDQTETLIKRFQRCWTEES----RRPKPWLLRALNNSLGG 301 (1495)
T ss_pred CCccccCCHHHHHHHHHHHHHHHHHhcCCCChhhccCCChhhhHHHHHHHHHHHHHHhh----ccCCchHHHHHHHHHHH
Confidence 46999999999999999999999999999999999999999999999999999999865 23468999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcccchhhHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 037346 82 EILFIAILALLYTLATYVGPYLIDNFVQYLNGRQAFEYEGYVL-----------CLSERHWFFQVQQFGIRFRATLFAMI 150 (1156)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~p~ll~~~i~~~~~~~~~~~~g~~l-----------~~~~~~~~~~~~~~~~~~r~~l~~~i 150 (1156)
.++.++++.++..++.+++|++++.+++++..++. .+.++.+ +++.++|.+...+++.++|..++..+
T Consensus 302 ~~~~~~~~~i~~~~~~~~~P~ll~~li~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ir~~l~~~i 380 (1495)
T PLN03232 302 RFWLGGIFKIGHDLSQFVGPVILSHLLQSMQEGDP-AWVGYVYAFLIFFGVTFGVLCESQYFQNVGRVGFRLRSTLVAAI 380 (1495)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCc-cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999864332 1222211 33445677777899999999999999
Q ss_pred HHHHhcCCccccCCCCHHHHHHHHHHHHHH--------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 037346 151 YNKGLTLSGQAKQGNTSGEIINLIAVDAER--------------------ALLILYKKLGLASIATLLATAIVMLANFPL 210 (1156)
Q Consensus 151 ~~k~l~l~~~~~~~~~~g~i~nl~s~D~~~--------------------~~~ll~~~lg~~~l~~~~~~~~~~~~~~~~ 210 (1156)
|+|.++++...+++.++|+++|++++|+++ +++++|+.+|+++++++++++++++++..+
T Consensus 381 ~~k~l~l~~~~~~~~~~G~i~n~ls~Dv~~i~~~~~~l~~l~~~p~~ii~~~~~l~~~lg~~~l~~~~v~~l~~pl~~~~ 460 (1495)
T PLN03232 381 FHKSLRLTHEARKNFASGKVTNMITTDANALQQIAEQLHGLWSAPFRIIVSMVLLYQQLGVASLFGSLILFLLIPLQTLI 460 (1495)
T ss_pred HHHHhcCChhhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 999999999888889999999999999998 345677888998888887777788888888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 037346 211 GRLREKFQDKFMETKDRRIKATSEILRNMRILKLQGWE---------LKKNETAWLKKSVYTEAMISFFCWGAPTFVSVV 281 (1156)
Q Consensus 211 ~~~~~~~~~~~~~~~d~r~~~~~e~l~~i~~IK~~~~e---------~r~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 281 (1156)
++...+.+++.++.+|+|.+.++|+++|||+||+|+|| .|++|.+..++.....++..++....|.++.++
T Consensus 461 ~~~~~~~~~~~~~~~d~r~~~~~E~l~gi~~IK~~~~e~~~~~~~~~~r~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 540 (1495)
T PLN03232 461 VRKMRKLTKEGLQWTDKRVGIINEILASMDTVKCYAWEKSFESRIQGIRNEELSWFRKAQLLSAFNSFILNSIPVVVTLV 540 (1495)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999 567777777776666555555555567777778
Q ss_pred HHHHHHHhCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCccccccCCCCCCCccEEEe
Q 037346 282 TFGSCILLGIPLESGMILSALTTFKILQEPIYYLPESISMMIQAKVPLDRIASFLCLEGLQTDVLEKMPRGNSDTAIEII 361 (1156)
Q Consensus 282 ~f~~~~~~~~~lt~~~~ft~l~~~~~l~~pl~~l~~~~~~~~~a~~s~~Ri~~fl~~~~~~~~~~~~~~~~~~~~~i~~~ 361 (1156)
+|++|.+.++.+|++.+|+++++++.+..|+..+|..+..+.++++|++||++|++.++...... .+.......|+++
T Consensus 541 ~fg~~~v~~~~lt~g~vf~~l~l~~~l~~pl~~l~~~~~~~~~a~~s~~Ri~~~L~~~~~~~~~~--~~~~~~~~~I~~~ 618 (1495)
T PLN03232 541 SFGVFVLLGGDLTPARAFTSLSLFAVLRSPLNMLPNLLSQVVNANVSLQRIEELLLSEERILAQN--PPLQPGAPAISIK 618 (1495)
T ss_pred HHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcccccccc--CCcCCCCCcEEEE
Confidence 99999999999999999999999999999999999999999999999999999998765322110 1111122469999
Q ss_pred eeEEEeCCCCCCCccccceEEeeCCeEEEEEcCCCCChHHHHHHHhCCCCCCCc-EEEEcCeEEEEecCCcCCCccHHHH
Q 037346 362 DGSFSWDFSSPNPTLRNINLKVFHGMRVAVCGTVGSGKSSCLSCILGGVPKESG-IIRLCGTKAYVAQSPWIQSGKIEEN 440 (1156)
Q Consensus 362 ~~~f~~~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKSTll~~i~g~~~~~~G-~i~~~g~~~~v~Q~~~~~~~ti~en 440 (1156)
|++|+|+..+++++|+|+||+|++||+++|+||+|||||||+++|+|+++|++| .+.+.++++||+|+||+|++|||||
T Consensus 619 ~vsF~y~~~~~~~vL~~inl~i~~Ge~vaIvG~sGSGKSTLl~lLlG~~~~~~G~i~~~~~~Iayv~Q~p~Lf~gTIreN 698 (1495)
T PLN03232 619 NGYFSWDSKTSKPTLSDINLEIPVGSLVAIVGGTGEGKTSLISAMLGELSHAETSSVVIRGSVAYVPQVSWIFNATVREN 698 (1495)
T ss_pred eeEEEcCCCCCCceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCcccCCCEEEecCcEEEEcCccccccccHHHH
Confidence 999999854456899999999999999999999999999999999999999997 4567899999999999999999999
Q ss_pred hhcCCCCCHHHHHHHHHHhCCchhhhhCCCCCccccccCCCCCCHHHHHHHHHHHhhccCCCeeeeeCCCCCcCHHHHHH
Q 037346 441 ILFGKEMDRERYERVLEACSLKKDLEVLPFGDQTIIGERGINLSGGQKQRIQIARPLYQDADIFLLDDPFSPVDDHTGAH 520 (1156)
Q Consensus 441 i~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~t~v~~~g~~LSgGqkqRi~lAral~~~~~illlDep~s~lD~~~~~~ 520 (1156)
|+||.++++++|++++++|+|.+|++.+|+||+|.|||+|.+|||||||||+||||+|++||||||||||||||++++++
T Consensus 699 I~fg~~~~~e~~~~vl~~~~L~~di~~Lp~Gd~T~IGe~G~~LSGGQkQRIaLARAly~~~~IlLLDEptSaLD~~t~~~ 778 (1495)
T PLN03232 699 ILFGSDFESERYWRAIDVTALQHDLDLLPGRDLTEIGERGVNISGGQKQRVSMARAVYSNSDIYIFDDPLSALDAHVAHQ 778 (1495)
T ss_pred hhcCCccCHHHHHHHHHHhCCHHHHHhCCCCCCceecCCCcccCHHHHHHHHHHHHHhcCCCEEEEcCCccccCHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHh--cCCCEEEEEccCCCccccCCEEEEEeCCeEEEccChHHHHhcCcchHHHHHhhhhhccCCCCCCCCCcccc
Q 037346 521 LFKFCWV--SSSKTVIYATHQVEFLPAADLILVIKDGKITQAGKYSDILNSGTDFMELVGAHKQALSGLDSIDRGPVSER 598 (1156)
Q Consensus 521 i~~~~~~--~~~~tvi~vtH~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 598 (1156)
+++.++. .+++|+|+|||+++.++.||+|++|++|+++++|+++++++.++.|.++...+....+.. . +. +. ..
T Consensus 779 I~~~~l~~~l~~kT~IlvTH~~~~l~~aD~Ii~L~~G~i~~~Gt~~eL~~~~~~~~~l~~~~~~~~~~~-~-~~-~~-~~ 854 (1495)
T PLN03232 779 VFDSCMKDELKGKTRVLVTNQLHFLPLMDRIILVSEGMIKEEGTFAELSKSGSLFKKLMENAGKMDATQ-E-VN-TN-DE 854 (1495)
T ss_pred HHHHHhhhhhcCCEEEEEECChhhHHhCCEEEEEeCCEEEEecCHHHHHhcchhHHHHHHhcccccccc-c-cc-cc-cc
Confidence 9988765 478999999999999999999999999999999999999987777777765432111000 0 00 00 00
Q ss_pred cccccCCCCCCCcccchhcccccCCCCcccccCccCcchhHHHHhcCcccHHHHHHHHHHhccchHHHHHHHHHHHHHHH
Q 037346 599 KSINKENDGTSTTNEIVNKEENKNFQSDDEAALPKGQLVQEEEREKGKVGFSVYWKYMTTAYGGVLVPFILLAQIIFQIF 678 (1156)
Q Consensus 599 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~g~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~ 678 (1156)
......+. .. ... . ...................+|+++.|.+++++|+.|+++.++.+.+.+++++.++.+++
T Consensus 855 ~~~~~~~~--~~-~~~---~-~~~~~~~~~~~~~~~~~~~~e~~~~g~v~~~vy~~y~~~~~~~~~~~~~~~~~~~~~~~ 927 (1495)
T PLN03232 855 NILKLGPT--VT-IDV---S-ERNLGSTKQGKRGRSVLVKQEERETGIISWNVLMRYNKAVGGLWVVMILLVCYLTTEVL 927 (1495)
T ss_pred cccccccc--cc-ccc---c-ccccccccccccchhhhhhHHHHhcCcccHHHHHHHHHHcCcHHHHHHHHHHHHHHHHH
Confidence 00000000 00 000 0 00000000000011124456778889999999999999877655555566666677888
Q ss_pred HhhhhhhhhhccccccccCCCCCchhhHHHHHH------------------HHHHHHHHHHHHHHHHhcccccccccccc
Q 037346 679 QIGSNYWMAWATPVAKDVNPAVGASTLIIVYVG------------------AGYKTATQLFNKMHVCIFRAPMYFFDSTP 740 (1156)
Q Consensus 679 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~------------------~~~~~~~~l~~~l~~~ll~~p~~ff~~~~ 740 (1156)
..+.++|+++|.+..... ......|+++|++ .+.+++.++|++++++++++|++||+++|
T Consensus 928 ~~~~~~wl~~w~~~~~~~--~~~~~~~l~~y~~l~~~~~~~~~~~~~~~~~~~~~~~~~lr~~l~~~ll~~p~~ff~~~~ 1005 (1495)
T PLN03232 928 RVSSSTWLSIWTDQSTPK--SYSPGFYIVVYALLGFGQVAVTFTNSFWLISSSLHAAKRLHDAMLNSILRAPMLFFHTNP 1005 (1495)
T ss_pred HHHHHHHHHHHhcccCCC--CCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCeeeeCcCC
Confidence 888999999887532110 1112233333322 56799999999999999999999999999
Q ss_pred ccchhhhhcccccccchhhhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 037346 741 SGRILNRVSENVKWADQSAADMDIPYDIGAFAFSMIQLLGIIVVMSLVAWQVLIVFVPVIATFIWYQQYYITSTRELSRL 820 (1156)
Q Consensus 741 ~G~il~R~s~d~~~~d~~~~d~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 820 (1156)
+|+++|||+ +|+..+|..++..+..++..++.+++.+++++..++..+++++|+++++++++.+|.+..|++++.
T Consensus 1006 ~G~ilnr~s-----~Di~~id~~l~~~~~~~~~~~~~~i~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~ 1080 (1495)
T PLN03232 1006 TGRVINRFS-----KDIGDIDRNVANLMNMFMNQLWQLLSTFALIGTVSTISLWAIMPLLILFYAAYLYYQSTSREVRRL 1080 (1495)
T ss_pred chHHHHHhH-----hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999 899999999999888888888888888888877777666677777777777888899999999999
Q ss_pred HhHhhChHHHHHHhhccchhhhhhcchHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Q 037346 821 IGVCKAPVIQQFSETISGSTTIRSLDQELRFRDTNMKLIDEYSRPKFHIAGAMEWLRFCIDMLSSITFAFSLAFLISVPN 900 (1156)
Q Consensus 821 ~~~~~s~~~~~~~e~l~Gi~tIra~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 900 (1156)
+..+++|++++++|+++|+.|||+|+.+++|.+++.+..+...+..+.......|+..++++++.+++.+...+.+....
T Consensus 1081 ~~~~~s~~~~~~~E~l~G~~tIraf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wl~~~~~~~~~~~~~~~~~~~v~~~~ 1160 (1495)
T PLN03232 1081 DSVTRSPIYAQFGEALNGLSSIRAYKAYDRMAKINGKSMDNNIRFTLANTSSNRWLTIRLETLGGVMIWLTATFAVLRNG 1160 (1495)
T ss_pred HHHhcChHHHHHHHHhcChHHHhcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc
Confidence 99999999999999999999999999999999999999999999988888889999988877665443332222111100
Q ss_pred ---------------------------CccchHHHHHHHhHHHHHHHHhhcCCCCCcccccCCCCCCCCCCCCeEEEEEE
Q 037346 901 ---------------------------GIIHPYKNLERKIISVERILQCACIPSEPALVIEATKPNNSRPSHGEVNIRHL 953 (1156)
Q Consensus 901 ---------------------------~~~~~~~~~~~~~~s~~Ri~~~~~~~~e~~~~~~~~~~~~~~p~~g~I~~~~V 953 (1156)
.......+++..++++||+.++.+.|+|++...+...++..||..|.|+|+||
T Consensus 1161 ~~~~~~~~~~~~g~~~~~~~~~~~~l~~l~~~~~~~~~~~~s~eRi~e~~~~~~e~~~~~~~~~~~~~~p~~g~I~f~nV 1240 (1495)
T PLN03232 1161 NAENQAGFASTMGLLLSYTLNITTLLSGVLRQASKAENSLNSVERVGNYIDLPSEATAIIENNRPVSGWPSRGSIKFEDV 1240 (1495)
T ss_pred cccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccccccccCCCCCCCCCCCCcEEEEEE
Confidence 00011146788899999999999988876432222234557999999999999
Q ss_pred EEEEcCCCC---------------ceeeCCCCCCHHHHHHHHhhcccCCCceEEEcCeeCCCCChHHHhhcCeeeccccc
Q 037346 954 QVRYAPNLP---------------LVLRGRTGSGKSTLIQTLFRIVESTAGHILIDGKDISLIGLHDLRTRLSIIPQDPT 1018 (1156)
Q Consensus 954 sf~Y~~~~~---------------~vL~G~SGsGKSTL~~lL~rl~~p~~G~I~idG~di~~i~~~~LR~~i~~VpQdp~ 1018 (1156)
+|+|+++.+ ++|+||||||||||+++|+|+|+|++|+|.|||+||+++++++||++|++|||||+
T Consensus 1241 sf~Y~~~~~~vL~~isl~I~~GekvaIVG~SGSGKSTL~~lL~rl~~p~~G~I~IdG~di~~i~~~~lR~~i~iVpQdp~ 1320 (1495)
T PLN03232 1241 HLRYRPGLPPVLHGLSFFVSPSEKVGVVGRTGAGKSSMLNALFRIVELEKGRIMIDDCDVAKFGLTDLRRVLSIIPQSPV 1320 (1495)
T ss_pred EEEECCCCCcccccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCcCCCceEEECCEEhhhCCHHHHHhhcEEECCCCe
Confidence 999976543 34669999999999999999999999999999999999999999999999999999
Q ss_pred cccccchhccCCCCCCCHHHHHHHHHHcCCChHHHhhcCCcccc------------------ccccccCCCEEEEecCCc
Q 037346 1019 MFEGTTRSNLDPLEEHADEQIWEALDKCQLGDEVRKKKGKLDSQ------------------GRVLLKKSKVLVLDEATA 1080 (1156)
Q Consensus 1019 LF~gTIr~Nl~~~~~~~deei~~al~~~~l~~~i~~lp~gl~s~------------------ARALLr~~~ILiLDEaTS 1080 (1156)
||+||||+||+|+++++|+|+|+||++|+++++|.++|+|||+. ||||||+|+|||||||||
T Consensus 1321 LF~gTIr~NL~~~~~~sdeei~~al~~a~l~~~I~~lp~GLdt~v~e~G~~LSgGQrQrlaLARALLr~~~ILILDEATS 1400 (1495)
T PLN03232 1321 LFSGTVRFNIDPFSEHNDADLWEALERAHIKDVIDRNPFGLDAEVSEGGENFSVGQRQLLSLARALLRRSKILVLDEATA 1400 (1495)
T ss_pred eeCccHHHHcCCCCCCCHHHHHHHHHHcCCHHHHHhCcCCCCceecCCCCCCCHHHHHHHHHHHHHHhCCCEEEEECCcc
Confidence 99999999999999999999999999999999999999999975 899999999999999999
Q ss_pred CCCHHHHHHHHHHHHHhcCCceEEEeecCcccccccCEEEEEeCcEEeeecChhHHhcCCCChHHHHHHHHhcc
Q 037346 1081 SVDTATDNQIQQTLRQHFSDCTVVTIAHRITSVLDSAMVLLLNHGLIKEYDSPTKLLENKSSSFAQLVAEYTSS 1154 (1156)
Q Consensus 1081 ~LD~~te~~I~~~l~~~~~~~TvI~IaHrl~ti~~~D~I~Vl~~G~IvE~G~~~eLl~~~~g~f~~l~~~~~~~ 1154 (1156)
+||++||+.||++|++.+++||+|+||||++|+.+||||+|||+|+|+|+|+|+||+++++|.|++|+++++..
T Consensus 1401 aLD~~Te~~Iq~~L~~~~~~~TvI~IAHRl~ti~~~DrIlVL~~G~ivE~Gt~~eLl~~~~~~f~~l~~~~~~~ 1474 (1495)
T PLN03232 1401 SVDVRTDSLIQRTIREEFKSCTMLVIAHRLNTIIDCDKILVLSSGQVLEYDSPQELLSRDTSAFFRMVHSTGPA 1474 (1495)
T ss_pred cCCHHHHHHHHHHHHHHcCCCEEEEEeCCHHHHHhCCEEEEEECCEEEEECCHHHHHhCCCCHHHHHHHHhChh
Confidence 99999999999999999999999999999999999999999999999999999999998778999999987643
|
|
| >TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP) | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.5e-170 Score=1685.86 Aligned_cols=1141 Identities=33% Similarity=0.567 Sum_probs=950.7
Q ss_pred CCCCCccChhHHHHHHhHHHHHHhhccCCCCCCCCCCCCCCCchhhHHHHHHHHHHHhhccc------------------
Q 037346 2 VTPYSNAGLFSIRSFSWMGSLIALGNKRTLDLEDVPRLDCSDSIYGVSPVLQNKLEAVVGVA------------------ 63 (1156)
Q Consensus 2 ~~p~~~~~~~s~~~f~w~~~l~~~g~~~~l~~~dl~~l~~~~~~~~~~~~~~~~~~~~~~~~------------------ 63 (1156)
.+||+++|++||++|+|++|++++||+++|+.+|||+++++++++.+.++|++.|+++..+.
T Consensus 201 ~~~e~~a~~~s~~~f~W~~pl~~~g~~~~L~~~dl~~l~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~ 280 (1522)
T TIGR00957 201 PCPESSASFLSRITFWWITGMAVYGYRQPLEESDLWSLNKEDTSEMVVPVLVENWKKECKKTRKQPVSAVYGKKDPSKPK 280 (1522)
T ss_pred CCCcccCCHHHHHHHHHhHHHHHHHhcCCCChhhccCCCHhHhHHHHHHHHHHHHHHHHhhccccccccccccccccccc
Confidence 37899999999999999999999999999999999999999999999999999998763100
Q ss_pred -------------------ccCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcccchhhHH
Q 037346 64 -------------------NRLTALRLAKVLFFSAWQEILFIAILALLYTLATYVGPYLIDNFVQYLNGRQAFEYEGYVL 124 (1156)
Q Consensus 64 -------------------~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~p~ll~~~i~~~~~~~~~~~~g~~l 124 (1156)
++.++++++++++++||+.++..++++++..++.+++|++++.+++++.++......|+++
T Consensus 281 ~~~~~~~~~~~~~~~~~~~~~~~~~sl~~~l~~~~~~~~l~~~~~~l~~~~~~~~~P~ll~~li~~~~~~~~~~~~g~~~ 360 (1522)
T TIGR00957 281 GSSQLDANEEVEALIVKSPHKPRKPSLFKVLYKTFGPYFLMSFCFKAIHDLMMFIGPQILSLLIRFVNDPMAPDWQGYFY 360 (1522)
T ss_pred ccccccccccccccccccccccCCccHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcccchHHHH
Confidence 1123578999999999999999999999999999999999999999986543222222221
Q ss_pred -----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccccCCCCHHHHHHHHHHHHHH-------------
Q 037346 125 -----------CLSERHWFFQVQQFGIRFRATLFAMIYNKGLTLSGQAKQGNTSGEIINLIAVDAER------------- 180 (1156)
Q Consensus 125 -----------~~~~~~~~~~~~~~~~~~r~~l~~~i~~k~l~l~~~~~~~~~~g~i~nl~s~D~~~------------- 180 (1156)
+++.++|.+...+++.++|.+++..+|+|+++++....++.++|+++|+|++|+++
T Consensus 361 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ir~~L~~~iy~K~L~l~~~~~~~~~~G~i~nl~s~D~~~i~~~~~~~~~~~~ 440 (1522)
T TIGR00957 361 TGLLFVCACLQTLILHQYFHICFVSGMRIKTAVMGAVYRKALVITNSARKSSTVGEIVNLMSVDAQRFMDLATYINMIWS 440 (1522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChhhcCCCCHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 44567777888999999999999999999999999888899999999999999998
Q ss_pred -------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH-----
Q 037346 181 -------ALLILYKKLGLASIATLLATAIVMLANFPLGRLREKFQDKFMETKDRRIKATSEILRNMRILKLQGWE----- 248 (1156)
Q Consensus 181 -------~~~ll~~~lg~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~r~~~~~e~l~~i~~IK~~~~e----- 248 (1156)
+++++|..+|+++++++++++++++++..+++...+.++++++.+|+|.+.++|+++|||+||+|+||
T Consensus 441 ~~~~i~~~~~ll~~~~g~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~r~~~~~E~l~~ik~IK~~~~e~~~~~ 520 (1522)
T TIGR00957 441 APLQVILALYFLWLNLGPSVLAGVAVMVLMVPLNAVMAMKTKTYQVAHMKSKDNRIKLMNEILNGIKVLKLYAWELAFLD 520 (1522)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHH
Confidence 45677889999999999888899999999999999999999999999999999999999999999999
Q ss_pred ----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--CCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 037346 249 ----LKKNETAWLKKSVYTEAMISFFCWGAPTFVSVVTFGSCILL--GIPLESGMILSALTTFKILQEPIYYLPESISMM 322 (1156)
Q Consensus 249 ----~r~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~--~~~lt~~~~ft~l~~~~~l~~pl~~l~~~~~~~ 322 (1156)
.|++|++..++..+...+..+.....|.++.+++|++|.+. ++.++++.+|+++++++.+..|+..+|..+..+
T Consensus 521 ~i~~~r~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~l~~~~~f~~l~l~~~l~~pl~~l~~~~~~~ 600 (1522)
T TIGR00957 521 KVEGIRQEELKVLKKSAYLHAVGTFTWVCTPFLVALITFAVYVTVDENNILDAEKAFVSLALFNILRFPLNILPMVISSI 600 (1522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 67788887777766666555555567888788888888776 467999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhccCCCCccccccCCCC-CCCccEEEeeeEEEeCCCCCCCccccceEEeeCCeEEEEEcCCCCChHH
Q 037346 323 IQAKVPLDRIASFLCLEGLQTDVLEKMPRG-NSDTAIEIIDGSFSWDFSSPNPTLRNINLKVFHGMRVAVCGTVGSGKSS 401 (1156)
Q Consensus 323 ~~a~~s~~Ri~~fl~~~~~~~~~~~~~~~~-~~~~~i~~~~~~f~~~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKST 401 (1156)
.++++|++||++|++.++.+....+..... .....++++|++|+|+.. ++++|+|+||+|++|++++|+|||||||||
T Consensus 601 ~~a~~s~~Ri~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~-~~~~l~~isl~i~~G~~v~IvG~~GsGKST 679 (1522)
T TIGR00957 601 VQASVSLKRLRIFLSHEELEPDSIERRTIKPGEGNSITVHNATFTWARD-LPPTLNGITFSIPEGALVAVVGQVGCGKSS 679 (1522)
T ss_pred HHHHHHHHHHHHHHcCcccccccccccccCCCCCCcEEEEEeEEEcCCC-CCceeeeeEEEEcCCCEEEEECCCCCCHHH
Confidence 999999999999998765432211111101 112369999999999742 357999999999999999999999999999
Q ss_pred HHHHHhCCCCCCCcEEEEcCeEEEEecCCcCCCccHHHHhhcCCCCCHHHHHHHHHHhCCchhhhhCCCCCccccccCCC
Q 037346 402 CLSCILGGVPKESGIIRLCGTKAYVAQSPWIQSGKIEENILFGKEMDRERYERVLEACSLKKDLEVLPFGDQTIIGERGI 481 (1156)
Q Consensus 402 ll~~i~g~~~~~~G~i~~~g~~~~v~Q~~~~~~~ti~eni~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~t~v~~~g~ 481 (1156)
|+++|+|+++|++|+|.++|+++||||+||++++||+|||.||.++++++|++++++|++.++++.+|+||+|.+|++|.
T Consensus 680 Ll~~l~g~~~~~~G~i~~~g~i~yv~Q~~~l~~~Ti~eNI~~g~~~~~~~~~~~~~~~~l~~~l~~~~~g~~t~ig~~g~ 759 (1522)
T TIGR00957 680 LLSALLAEMDKVEGHVHMKGSVAYVPQQAWIQNDSLRENILFGKALNEKYYQQVLEACALLPDLEILPSGDRTEIGEKGV 759 (1522)
T ss_pred HHHHHhCCCccCCcEEEECCEEEEEcCCccccCCcHHHHhhcCCccCHHHHHHHHHHhCCHHHHHhcCCCCCceecCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHhhccCCCeeeeeCCCCCcCHHHHHHHHHHHHh----cCCCEEEEEccCCCccccCCEEEEEeCCeE
Q 037346 482 NLSGGQKQRIQIARPLYQDADIFLLDDPFSPVDDHTGAHLFKFCWV----SSSKTVIYATHQVEFLPAADLILVIKDGKI 557 (1156)
Q Consensus 482 ~LSgGqkqRi~lAral~~~~~illlDep~s~lD~~~~~~i~~~~~~----~~~~tvi~vtH~~~~~~~~d~i~~l~~G~i 557 (1156)
+|||||||||+||||+|++|+++|||||||+||+++++++++.+.. .+++|+|+|||+++.++.||+|++|++|++
T Consensus 760 ~LSGGQkqRiaLARAl~~~~~illLDEp~saLD~~~~~~i~~~l~~~~~~~~~~tvIlvTH~~~~l~~~D~ii~l~~G~i 839 (1522)
T TIGR00957 760 NLSGGQKQRVSLARAVYSNADIYLFDDPLSAVDAHVGKHIFEHVIGPEGVLKNKTRILVTHGISYLPQVDVIIVMSGGKI 839 (1522)
T ss_pred CCCHHHHHHHHHHHHHhcCCCEEEEcCCccccCHHHHHHHHHHHhhhhhhhcCCEEEEEeCChhhhhhCCEEEEecCCeE
Confidence 9999999999999999999999999999999999999999998753 467999999999999999999999999999
Q ss_pred EEccChHHHHhcCcchHHHHHhhhhhccCCCCCCC-CC---cccccccccCC-------CCCCCcccc---hh-cccc-c
Q 037346 558 TQAGKYSDILNSGTDFMELVGAHKQALSGLDSIDR-GP---VSERKSINKEN-------DGTSTTNEI---VN-KEEN-K 621 (1156)
Q Consensus 558 ~~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~---~~~~~~~~~~~-------~~~~~~~~~---~~-~~~~-~ 621 (1156)
+++|+++++.+..+.+.++...+..........+. .+ .........+. ......... .. .... .
T Consensus 840 ~~~g~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 919 (1522)
T TIGR00957 840 SEMGSYQELLQRDGAFAEFLRTYAPDEQQGHLEDSWTALVSGEGKEAKLIENGMLVTDVVGKQLQRQLSASSSDSGDQSR 919 (1522)
T ss_pred EeeCCHHHHHhcchhHHHHHHhhccccccccccccccccccccccccccccccccccccccchhhhhccccccccccccc
Confidence 99999999998777777766433211100000000 00 00000000000 000000000 00 0000 0
Q ss_pred C--CC---CcccccCccCcchhHHHHhcCcccHHHHHHHHHHhccchHHHHHHHHHHHHHHHHhhhhhhhhhcccccccc
Q 037346 622 N--FQ---SDDEAALPKGQLVQEEEREKGKVGFSVYWKYMTTAYGGVLVPFILLAQIIFQIFQIGSNYWMAWATPVAKDV 696 (1156)
Q Consensus 622 ~--~~---~~~~~~~~~~~~~~~e~~~~g~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 696 (1156)
. .. ...+..........+|+++.|.+++.+|+.|+++.+. ..+.+++++.++.+++..+.++|+++|.+.....
T Consensus 920 ~~~~~~~~~~~~~~~~~~~~~~~e~~~~g~v~~~~y~~Y~~~~g~-~~~~~~~~~~~~~~~~~~~~~~~l~~w~~~~~~~ 998 (1522)
T TIGR00957 920 HHGSSAELQKAEAKEETWKLMEADKAQTGQVELSVYWDYMKAIGL-FITFLSIFLFVCNHVSALASNYWLSLWTDDPMVN 998 (1522)
T ss_pred cccccccccccccccchhhhHHHHHHhcCcccHHHHHHHHHHcCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccc
Confidence 0 00 0000000112334566778899999999999998753 3334444555667778888999999887532111
Q ss_pred CCCCCchhhHHHHHH------------------HHHHHHHHHHHHHHHHhccccccccccccccchhhhhcccccccchh
Q 037346 697 NPAVGASTLIIVYVG------------------AGYKTATQLFNKMHVCIFRAPMYFFDSTPSGRILNRVSENVKWADQS 758 (1156)
Q Consensus 697 ~~~~~~~~~~~~~~~------------------~~~~~~~~l~~~l~~~ll~~p~~ff~~~~~G~il~R~s~d~~~~d~~ 758 (1156)
........++.+|++ .+.++++++|++++++++++|++||+++|+|+|+|||+ .|+.
T Consensus 999 ~~~~~~~~~~~iy~~l~i~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~ll~~p~~ff~~~~~G~ilnR~s-----~Di~ 1073 (1522)
T TIGR00957 999 GTQNNTSLRLSVYGALGILQGFAVFGYSMAVSIGGIQASRVLHQDLLHNKLRSPMSFFERTPSGNLVNRFS-----KELD 1073 (1522)
T ss_pred CCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChhHhccCChHHHHHHHH-----HHHH
Confidence 111111122222221 46799999999999999999999999999999999999 8999
Q ss_pred hhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhChHHHHHHhhccc
Q 037346 759 AADMDIPYDIGAFAFSMIQLLGIIVVMSLVAWQVLIVFVPVIATFIWYQQYYITSTRELSRLIGVCKAPVIQQFSETISG 838 (1156)
Q Consensus 759 ~~d~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~e~l~G 838 (1156)
.+|..++..+..++..++.+++.++++++.+|+++++++|+++++++++++|.+..|++++.+.++++|+++++.|+++|
T Consensus 1074 ~id~~l~~~~~~~~~~~~~~i~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~s~l~~~~~E~l~G 1153 (1522)
T TIGR00957 1074 TVDSMIPPVIKMFMGSLFNVIGALIVILLATPIAAVIIPPLGLLYFFVQRFYVASSRQLKRLESVSRSPVYSHFNETLLG 1153 (1522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhCC
Confidence 99999999999999999999999999888888888888888888889999999999999999999999999999999999
Q ss_pred hhhhhhcchHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccc--------------
Q 037346 839 STTIRSLDQELRFRDTNMKLIDEYSRPKFHIAGAMEWLRFCIDMLSSITFAFSLAFLISVPNGIIH-------------- 904 (1156)
Q Consensus 839 i~tIra~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~-------------- 904 (1156)
+.|||+||++++|.+++.+..+...++.+.....++|+..++++++.+++.++..+.+.. .+.++
T Consensus 1154 i~tIraf~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~-~~~~~~g~l~~~l~~~~~~ 1232 (1522)
T TIGR00957 1154 VSVIRAFEEQERFIHQSDLKVDENQKAYYPSIVANRWLAVRLECVGNCIVLFAALFAVIS-RHSLSAGLVGLSVSYSLQV 1232 (1522)
T ss_pred cHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cCCCCHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999887665443333222211 11111
Q ss_pred ---------hHHHHHHHhHHHHHHHHhhcCCCCCcccccCCCCCCCCCCCCeEEEEEEEEEEcCCCC-------------
Q 037346 905 ---------PYKNLERKIISVERILQCACIPSEPALVIEATKPNNSRPSHGEVNIRHLQVRYAPNLP------------- 962 (1156)
Q Consensus 905 ---------~~~~~~~~~~s~~Ri~~~~~~~~e~~~~~~~~~~~~~~p~~g~I~~~~Vsf~Y~~~~~------------- 962 (1156)
...+++..++|++|+.++.+.++|++...+...++..||..|.|+|+||+|+|+++.+
T Consensus 1233 ~~~l~~l~~~~~~~e~~~~s~eRi~~~~~~~~e~~~~~~~~~~~~~wp~~g~I~f~nVsf~Y~~~~~~vL~~is~~I~~G 1312 (1522)
T TIGR00957 1233 TFYLNWLVRMSSEMETNIVAVERLKEYSETEKEAPWQIQETAPPSGWPPRGRVEFRNYCLRYREDLDLVLRHINVTIHGG 1312 (1522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCccccccCCCCCCCCCCCCcEEEEEEEEEeCCCCcccccceeEEEcCC
Confidence 1267889999999999999888775422223344567999999999999999976543
Q ss_pred --ceeeCCCCCCHHHHHHHHhhcccCCCceEEEcCeeCCCCChHHHhhcCeeeccccccccccchhccCCCCCCCHHHHH
Q 037346 963 --LVLRGRTGSGKSTLIQTLFRIVESTAGHILIDGKDISLIGLHDLRTRLSIIPQDPTMFEGTTRSNLDPLEEHADEQIW 1040 (1156)
Q Consensus 963 --~vL~G~SGsGKSTL~~lL~rl~~p~~G~I~idG~di~~i~~~~LR~~i~~VpQdp~LF~gTIr~Nl~~~~~~~deei~ 1040 (1156)
++++||||||||||+++|+|+|+|++|+|.|||+||+++++++||++|++|||||+||+||||+||||+++++|+|+|
T Consensus 1313 ekiaIVGrTGsGKSTL~~lL~rl~~~~~G~I~IdG~dI~~i~~~~LR~~i~iVpQdp~LF~gTIr~NLdp~~~~sdeei~ 1392 (1522)
T TIGR00957 1313 EKVGIVGRTGAGKSSLTLGLFRINESAEGEIIIDGLNIAKIGLHDLRFKITIIPQDPVLFSGSLRMNLDPFSQYSDEEVW 1392 (1522)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCccCCCCeEEECCEEccccCHHHHHhcCeEECCCCcccCccHHHHcCcccCCCHHHHH
Confidence 356699999999999999999999999999999999999999999999999999999999999999999899999999
Q ss_pred HHHHHcCCChHHHhhcCCcccc------------------ccccccCCCEEEEecCCcCCCHHHHHHHHHHHHHhcCCce
Q 037346 1041 EALDKCQLGDEVRKKKGKLDSQ------------------GRVLLKKSKVLVLDEATASVDTATDNQIQQTLRQHFSDCT 1102 (1156)
Q Consensus 1041 ~al~~~~l~~~i~~lp~gl~s~------------------ARALLr~~~ILiLDEaTS~LD~~te~~I~~~l~~~~~~~T 1102 (1156)
+||++|+++++|.++|+|||+. ||||||+|+|||||||||+||++||+.||++|++.+++||
T Consensus 1393 ~al~~a~l~~~I~~lp~GLdt~v~e~G~~LSgGQrQrl~LARALLr~~~ILiLDEaTSalD~~Te~~Iq~~l~~~~~~~T 1472 (1522)
T TIGR00957 1393 WALELAHLKTFVSALPDKLDHECAEGGENLSVGQRQLVCLARALLRKTKILVLDEATAAVDLETDNLIQSTIRTQFEDCT 1472 (1522)
T ss_pred HHHHHcCcHHHHhhCccCCCceecCCCCcCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHcCCCE
Confidence 9999999999999999999975 8999999999999999999999999999999999999999
Q ss_pred EEEeecCcccccccCEEEEEeCcEEeeecChhHHhcCCCChHHHHHHHH
Q 037346 1103 VVTIAHRITSVLDSAMVLLLNHGLIKEYDSPTKLLENKSSSFAQLVAEY 1151 (1156)
Q Consensus 1103 vI~IaHrl~ti~~~D~I~Vl~~G~IvE~G~~~eLl~~~~g~f~~l~~~~ 1151 (1156)
||+||||++|+.+||||+|||+|+|+|+|+|+||+++ +|.|++|+++.
T Consensus 1473 vI~IAHRl~ti~~~DrIlVld~G~IvE~G~~~eLl~~-~~~f~~l~~~~ 1520 (1522)
T TIGR00957 1473 VLTIAHRLNTIMDYTRVIVLDKGEVAEFGAPSNLLQQ-RGIFYSMAKDA 1520 (1522)
T ss_pred EEEEecCHHHHHhCCEEEEEECCEEEEECCHHHHHhC-CCHHHHHHHHc
Confidence 9999999999999999999999999999999999986 69999999875
|
This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved. |
| >TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR) | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-165 Score=1638.07 Aligned_cols=1138 Identities=28% Similarity=0.454 Sum_probs=942.1
Q ss_pred CCCCCccChhHHHHHHhHHHHHHhhccCCCCCCCCCCCCCCCchhhHHHHHHHHHHHhhcccccCCccchHHHHHHHHHH
Q 037346 2 VTPYSNAGLFSIRSFSWMGSLIALGNKRTLDLEDVPRLDCSDSIYGVSPVLQNKLEAVVGVANRLTALRLAKVLFFSAWQ 81 (1156)
Q Consensus 2 ~~p~~~~~~~s~~~f~w~~~l~~~g~~~~l~~~dl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~ 81 (1156)
.+||+++|+|||++|+|++|++++|++++|+.+|||+|+++++++.+.++|++.|+++.. +..++++|+++++++|++
T Consensus 3 ~~pe~~a~~~s~~~F~W~~pl~~~g~~~~L~~~Dl~~l~~~~~~~~~~~~~~~~w~~~~~--~~~~~~~L~~~l~~~~~~ 80 (1490)
T TIGR01271 3 RSPVEKANFLSKLFFWWTRPILRKGYRQKLELSDIYQIPSFDSADNLSERLEREWDRELA--SAKKNPKLLNALRRCFFW 80 (1490)
T ss_pred CCccccCCHHHHHHHHHHHHHHHHHhcCCCChhhccCCChHHhHHHHHHHHHHHHHHHHh--ccCCCChHHHHHHHHHHH
Confidence 479999999999999999999999999999999999999999999999999999998642 124568899999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcc-cchhhHH-----------HHHHHHHHHHHHHHHHHHHHHHHHH
Q 037346 82 EILFIAILALLYTLATYVGPYLIDNFVQYLNGRQAF-EYEGYVL-----------CLSERHWFFQVQQFGIRFRATLFAM 149 (1156)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~p~ll~~~i~~~~~~~~~-~~~g~~l-----------~~~~~~~~~~~~~~~~~~r~~l~~~ 149 (1156)
.+++.+++.++.+++.+++|++++++++++.+.... ...++.+ +++.+++.|...+++.++|.++...
T Consensus 81 ~~~~~~~~~~~~~~~~~~~P~ll~~li~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~r~~L~~~ 160 (1490)
T TIGR01271 81 RFVFYGILLYFGEATKAVQPLLLGRIIASYDPFNAPEREIAYYLALGLCLLFIVRTLLLHPAIFGLHHLGMQMRIALFSL 160 (1490)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999998532211 1122211 3455667778889999999999999
Q ss_pred HHHHHhcCCccccCCCCHHHHHHHHHHHHHH--------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 037346 150 IYNKGLTLSGQAKQGNTSGEIINLIAVDAER--------------------ALLILYKKLGLASIATLLATAIVMLANFP 209 (1156)
Q Consensus 150 i~~k~l~l~~~~~~~~~~g~i~nl~s~D~~~--------------------~~~ll~~~lg~~~l~~~~~~~~~~~~~~~ 209 (1156)
+|+|+++++....++.++|+++|+|++|+++ +++++|+.+|+++++|+++++++++++.+
T Consensus 161 iy~K~L~l~~~~~~~~~~g~i~nl~s~Dv~~i~~~~~~~~~~~~~pi~i~~~~~lL~~~~G~~~l~~l~v~~~~~~~~~~ 240 (1490)
T TIGR01271 161 IYKKTLKLSSRVLDKISTGQLVSLLSNNLNKFDEGLALAHFVWIAPLQVILLMGLIWELLEVNGFCGLGFLILLALFQAC 240 (1490)
T ss_pred HHHHHHhCCHHHhcCCCHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999998888889999999999999998 45788899999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 037346 210 LGRLREKFQDKFMETKDRRIKATSEILRNMRILKLQGWE---------LKKNETAWLKKSVYTEAMISFFCWGAPTFVSV 280 (1156)
Q Consensus 210 ~~~~~~~~~~~~~~~~d~r~~~~~e~l~~i~~IK~~~~e---------~r~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~ 280 (1156)
+++.+.+.++++++.+|+|++.++|+++|||+||+|+|| .|+.|++..++..+...+...+.+..|.++.+
T Consensus 241 ~~~~~~~~~~~~~~~~d~R~~~~~E~l~~ik~IK~~~~E~~~~~~i~~~R~~El~~~~~~~~~~~~~~~~~~~~~~~~~~ 320 (1490)
T TIGR01271 241 LGQKMMPYRDKRAGKISERLAITSEIIENIQSVKAYCWEEAMEKIIKNIRQDELKLTRKIAYLRYFYSSAFFFSGFFVVF 320 (1490)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999 78889888888777666666666677888888
Q ss_pred HHHHHHHHhCCCccHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhccCCCCccccccCCCCCCCccEE
Q 037346 281 VTFGSCILLGIPLESGMILSALTTFKILQEPIY-YLPESISMMIQAKVPLDRIASFLCLEGLQTDVLEKMPRGNSDTAIE 359 (1156)
Q Consensus 281 ~~f~~~~~~~~~lt~~~~ft~l~~~~~l~~pl~-~l~~~~~~~~~a~~s~~Ri~~fl~~~~~~~~~~~~~~~~~~~~~i~ 359 (1156)
++|++|.+.++ ++++.+|+++++|++++.|+. .+|..+..+.++.+|++||++||..++.+... . ......++
T Consensus 321 ~~f~~y~~~~~-~~~~~~ft~lal~~lL~~~l~~~lp~~~~~~~~a~~s~~RI~~fL~~~e~~~~~--~---~~~~~~i~ 394 (1490)
T TIGR01271 321 LSVVPYALIKG-IILRRIFTTISYCIVLRMTVTRQFPGAIQTWYDSLGAITKIQDFLCKEEYKTLE--Y---NLTTTEVE 394 (1490)
T ss_pred HHHHHHHHhCC-CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccccccc--c---cCCCCceE
Confidence 99999987755 789999999999999999985 79999999999999999999999877643211 0 01123599
Q ss_pred EeeeEEEeCCC-------------------------------CCCCccccceEEeeCCeEEEEEcCCCCChHHHHHHHhC
Q 037346 360 IIDGSFSWDFS-------------------------------SPNPTLRNINLKVFHGMRVAVCGTVGSGKSSCLSCILG 408 (1156)
Q Consensus 360 ~~~~~f~~~~~-------------------------------~~~~~l~~i~l~i~~g~~~~ivG~~GsGKSTll~~i~g 408 (1156)
++|++|.|+.. ..+++|+|+||+|++|++++|+||||||||||+++|+|
T Consensus 395 ~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~l~~i~l~i~~G~~~~I~G~~GsGKSTLl~~l~G 474 (1490)
T TIGR01271 395 MVNVTASWDEGIGELFEKIKQNNKARKQPNGDDGLFFSNFSLYVTPVLKNISFKLEKGQLLAVAGSTGSGKSSLLMMIMG 474 (1490)
T ss_pred EecceEecCCccccccccccccccccccccccccccccccccccCcceeeeEEEECCCCEEEEECCCCCCHHHHHHHHhC
Confidence 99999999531 01468999999999999999999999999999999999
Q ss_pred CCCCCCcEEEEcCeEEEEecCCcCCCccHHHHhhcCCCCCHHHHHHHHHHhCCchhhhhCCCCCccccccCCCCCCHHHH
Q 037346 409 GVPKESGIIRLCGTKAYVAQSPWIQSGKIEENILFGKEMDRERYERVLEACSLKKDLEVLPFGDQTIIGERGINLSGGQK 488 (1156)
Q Consensus 409 ~~~~~~G~i~~~g~~~~v~Q~~~~~~~ti~eni~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~t~v~~~g~~LSgGqk 488 (1156)
+++|++|+|.++|+++||+|+||++++||+|||+||.++++++|++++++|+|.++++.+|.||+|.+|++|.+||||||
T Consensus 475 ~~~~~~G~i~~~g~iayv~Q~~~l~~~Ti~eNI~~g~~~~~~~~~~~~~~~~L~~~l~~l~~g~~t~vg~~g~~LSgGqk 554 (1490)
T TIGR01271 475 ELEPSEGKIKHSGRISFSPQTSWIMPGTIKDNIIFGLSYDEYRYTSVIKACQLEEDIALFPEKDKTVLGEGGITLSGGQR 554 (1490)
T ss_pred CCCCCCceEEECCEEEEEeCCCccCCccHHHHHHhccccchHHHHHHHHHHhHHHHHHhccccccccccCcCCCcCHHHH
Confidence 99999999999999999999999999999999999988888999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhccCCCeeeeeCCCCCcCHHHHHHHHHHHHh--cCCCEEEEEccCCCccccCCEEEEEeCCeEEEccChHHH
Q 037346 489 QRIQIARPLYQDADIFLLDDPFSPVDDHTGAHLFKFCWV--SSSKTVIYATHQVEFLPAADLILVIKDGKITQAGKYSDI 566 (1156)
Q Consensus 489 qRi~lAral~~~~~illlDep~s~lD~~~~~~i~~~~~~--~~~~tvi~vtH~~~~~~~~d~i~~l~~G~i~~~g~~~~l 566 (1156)
|||+||||+|++|++|||||||||||+++++++++.++. .+++|+|+|||+++.+..||+|++|++|++++.|+++++
T Consensus 555 qRi~lARAl~~~~~illLDep~saLD~~~~~~i~~~~l~~~~~~~tvilvtH~~~~~~~ad~ii~l~~g~i~~~g~~~~l 634 (1490)
T TIGR01271 555 ARISLARAVYKDADLYLLDSPFTHLDVVTEKEIFESCLCKLMSNKTRILVTSKLEHLKKADKILLLHEGVCYFYGTFSEL 634 (1490)
T ss_pred HHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhcCCeEEEEeCChHHHHhCCEEEEEECCEEEEEcCHHHH
Confidence 999999999999999999999999999999999987653 468999999999999988999999999999999999999
Q ss_pred HhcCcchHHHHHhhhhhcc--------C---------CC--------C-C------CCCCcccccc--------------
Q 037346 567 LNSGTDFMELVGAHKQALS--------G---------LD--------S-I------DRGPVSERKS-------------- 600 (1156)
Q Consensus 567 ~~~~~~~~~~~~~~~~~~~--------~---------~~--------~-~------~~~~~~~~~~-------------- 600 (1156)
...+..+.+.+.......+ . .+ + . ++.+......
T Consensus 635 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 714 (1490)
T TIGR01271 635 QAKRPDFSSLLLGLEAFDNFSAERRNSILTETLRRVSIDGDSTVFSGPETIKQSFKQPPPEFAEKRKQSIILNPIASARK 714 (1490)
T ss_pred HhcChHHHHHHhcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 8765555554421000000 0 00 0 0 0000000000
Q ss_pred ---------c----c-cC---CCC----------------CCCccc-----------c-------hhc--ccccCCC---
Q 037346 601 ---------I----N-KE---NDG----------------TSTTNE-----------I-------VNK--EENKNFQ--- 624 (1156)
Q Consensus 601 ---------~----~-~~---~~~----------------~~~~~~-----------~-------~~~--~~~~~~~--- 624 (1156)
. . .. +.. ....+. . ... .+.....
T Consensus 715 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 794 (1490)
T TIGR01271 715 FSFVQMGPQKAQATTIEDAVREPSERKFSLVPEDEQGEESLPRGNQYHHGLQHQAQRRQSVLQLMTHSNRGENRREQLQT 794 (1490)
T ss_pred cccccccccccccccccchhcccccccccccccccccccccccccccccccccccccccchhhccccccccccccccccc
Confidence 0 0 00 000 000000 0 000 0000000
Q ss_pred ---------------Cc---------cc----------ccCccCcchhHHHHhcCcccHHHHHHHHHHhccchHHHHHHH
Q 037346 625 ---------------SD---------DE----------AALPKGQLVQEEEREKGKVGFSVYWKYMTTAYGGVLVPFILL 670 (1156)
Q Consensus 625 ---------------~~---------~~----------~~~~~~~~~~~e~~~~g~~~~~~~~~y~~~~~~~~~~~~~~~ 670 (1156)
.+ .+ ..........+|++..|.++|++|+.|+++.+++.++.++++
T Consensus 795 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~g~v~~~vY~~Y~~~~g~~~~~~~~~~ 874 (1490)
T TIGR01271 795 SFRKKSSITQQNELASELDIYSRRLSKDSVYEISEEINEEDLKECFADERENVFETTTWNTYLRYITTNRNLVFVLIFCL 874 (1490)
T ss_pred ccccccccccccccccccccccccccccccccccccchhhhhhhhhhHHHHhhcCcccHHHHHHHHHhcCcHHHHHHHHH
Confidence 00 00 000001234456677899999999999998765555555556
Q ss_pred HHHHHHHHHhhhhhhhhhccccc------cccCC------------CCCchhhHHHHHH------------------HHH
Q 037346 671 AQIIFQIFQIGSNYWMAWATPVA------KDVNP------------AVGASTLIIVYVG------------------AGY 714 (1156)
Q Consensus 671 ~~~~~~~~~~~~~~~l~~~~~~~------~~~~~------------~~~~~~~~~~~~~------------------~~~ 714 (1156)
+.++.+++..+.++|+.+|.... ..... .....+++++|.+ .+.
T Consensus 875 ~~~~~~~~~~~~~~wl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 954 (1490)
T TIGR01271 875 VIFLAEVAASLLGLWLITDNPSAPNYVDQQHANASSPDVQKPVIITPTSAYYIFYIYVGTADSVLALGFFRGLPLVHTLL 954 (1490)
T ss_pred HHHHHHHHHHHhhHHHHhcccccccccccccccCCCccccccccccCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66777888899999998765311 00000 0011111222211 456
Q ss_pred HHHHHHHHHHHHHhccccccccccccccchhhhhcccccccchhhhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 037346 715 KTATQLFNKMHVCIFRAPMYFFDSTPSGRILNRVSENVKWADQSAADMDIPYDIGAFAFSMIQLLGIIVVMSLVAWQVLI 794 (1156)
Q Consensus 715 ~~~~~l~~~l~~~ll~~p~~ff~~~~~G~il~R~s~d~~~~d~~~~d~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l 794 (1156)
+++.++|.+++++++++|++||+++|+|+++|||+ .|+..+|..++..+..++..++.+++.++++++.+|++++
T Consensus 955 ~~~~~l~~~l~~~ll~~p~~ff~~~~~G~ilnRfs-----~Di~~id~~l~~~~~~~~~~~~~~i~~l~~i~~~~p~l~l 1029 (1490)
T TIGR01271 955 TVSKRLHEQMLHSVLQAPMAVLNTMKAGRILNRFT-----KDMAIIDDMLPLTLFDFIQLTLIVLGAIFVVSVLQPYIFI 1029 (1490)
T ss_pred HHHHHHHHHHHHHHHcCCHHHhCCCChhHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 89999999999999999999999999999999999 8999999999999999999999999999999999999888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhChHHHHHHhhccchhhhhhcchHHHHHHHHHHHHHHHhhHHHHHHHHHH
Q 037346 795 VFVPVIATFIWYQQYYITSTRELSRLIGVCKAPVIQQFSETISGSTTIRSLDQELRFRDTNMKLIDEYSRPKFHIAGAME 874 (1156)
Q Consensus 795 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~e~l~Gi~tIra~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~ 874 (1156)
+++|+++++++++++|.+.+|++++.+..+++|+++++.|+++|+.|||+|++++++.+++.+..+...+..+.....++
T Consensus 1030 ~~~~l~~~~~~~~~~~~~~~r~l~~~~~~~~s~l~~~~~Etl~Gl~tIraf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1109 (1490)
T TIGR01271 1030 AAIPVAVIFIMLRAYFLRTSQQLKQLESEARSPIFSHLITSLKGLWTIRAFGRQSYFETLFHKALNLHTANWFLYLSTLR 1109 (1490)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhcCHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88888888888999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHc---CCC------------------ccchHHHHHHHhHHHHHHHHhhcCCCCCcccc
Q 037346 875 WLRFCIDMLSSITFAFSLAFLISV---PNG------------------IIHPYKNLERKIISVERILQCACIPSEPALVI 933 (1156)
Q Consensus 875 ~~~~~l~~~~~~~~~~~~~~~~~~---~~~------------------~~~~~~~~~~~~~s~~Ri~~~~~~~~e~~~~~ 933 (1156)
|+..++++++.+.+..++.+.+.. ..+ .+....+++..+.+++|+.+|.+.|+|+....
T Consensus 1110 wl~~~~~~i~~~~~~~~~~l~~~~~~~~~g~~g~~l~~~~~l~~~l~~l~~~~~~le~~~~s~eRi~~~~~~~~e~~~~~ 1189 (1490)
T TIGR01271 1110 WFQMRIDIIFVFFFIAVTFIAIGTNQDGEGEVGIILTLAMNILSTLQWAVNSSIDVDGLMRSVSRVFKFIDLPQEEPRPS 1189 (1490)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcccccc
Confidence 999998886654333222211110 000 11112577889999999999998887753211
Q ss_pred c--------------CCCCCCCCCCCCeEEEEEEEEEEcCCCCc---------------eeeCCCCCCHHHHHHHHhhcc
Q 037346 934 E--------------ATKPNNSRPSHGEVNIRHLQVRYAPNLPL---------------VLRGRTGSGKSTLIQTLFRIV 984 (1156)
Q Consensus 934 ~--------------~~~~~~~~p~~g~I~~~~Vsf~Y~~~~~~---------------vL~G~SGsGKSTL~~lL~rl~ 984 (1156)
+ ...+++.||..|.|+|+||+|+|+++.++ +|+||||||||||+++|+|++
T Consensus 1190 ~~~~~~~~~~~~~~~~~~~~~~wp~~g~I~f~nVs~~Y~~~~~~vL~~is~~I~~GekvaIvGrSGsGKSTLl~lL~rl~ 1269 (1490)
T TIGR01271 1190 GGGGKYQLSTVLVIENPHAQKCWPSGGQMDVQGLTAKYTEAGRAVLQDLSFSVEGGQRVGLLGRTGSGKSTLLSALLRLL 1269 (1490)
T ss_pred ccccccccccccccccCCCCCCCCCCCeEEEEEEEEEeCCCCcceeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhhhc
Confidence 1 11234569999999999999999765443 455999999999999999999
Q ss_pred cCCCceEEEcCeeCCCCChHHHhhcCeeeccccccccccchhccCCCCCCCHHHHHHHHHHcCCChHHHhhcCCcccc--
Q 037346 985 ESTAGHILIDGKDISLIGLHDLRTRLSIIPQDPTMFEGTTRSNLDPLEEHADEQIWEALDKCQLGDEVRKKKGKLDSQ-- 1062 (1156)
Q Consensus 985 ~p~~G~I~idG~di~~i~~~~LR~~i~~VpQdp~LF~gTIr~Nl~~~~~~~deei~~al~~~~l~~~i~~lp~gl~s~-- 1062 (1156)
+ ++|+|+|||+||+++++++||++|++|||||+||+||||+||||+++++|+++|+||+++++++++.++|+|||+.
T Consensus 1270 ~-~~G~I~IdG~di~~i~~~~lR~~is~IpQdp~LF~GTIR~NLdp~~~~tdeei~~aL~~~~L~~~i~~lp~GLdt~v~ 1348 (1490)
T TIGR01271 1270 S-TEGEIQIDGVSWNSVTLQTWRKAFGVIPQKVFIFSGTFRKNLDPYEQWSDEEIWKVAEEVGLKSVIEQFPDKLDFVLV 1348 (1490)
T ss_pred C-CCcEEEECCEEcccCCHHHHHhceEEEeCCCccCccCHHHHhCcccCCCHHHHHHHHHHCCCHHHHHhCccccccccc
Confidence 8 7999999999999999999999999999999999999999999999999999999999999999999999999975
Q ss_pred ----------------ccccccCCCEEEEecCCcCCCHHHHHHHHHHHHHhcCCceEEEeecCcccccccCEEEEEeCcE
Q 037346 1063 ----------------GRVLLKKSKVLVLDEATASVDTATDNQIQQTLRQHFSDCTVVTIAHRITSVLDSAMVLLLNHGL 1126 (1156)
Q Consensus 1063 ----------------ARALLr~~~ILiLDEaTS~LD~~te~~I~~~l~~~~~~~TvI~IaHrl~ti~~~D~I~Vl~~G~ 1126 (1156)
||||||+|+|||||||||+||++||+.||++|++.+++||||+||||++++.+||||+|||+|+
T Consensus 1349 e~G~nLSgGQrQrL~LARALLr~~~ILlLDEaTS~lD~~Te~~I~~~L~~~~~~~TvI~IaHRl~ti~~~DrIlvL~~G~ 1428 (1490)
T TIGR01271 1349 DGGYVLSNGHKQLMCLARSILSKAKILLLDEPSAHLDPVTLQIIRKTLKQSFSNCTVILSEHRVEALLECQQFLVIEGSS 1428 (1490)
T ss_pred cCCCcCCHHHHHHHHHHHHHhCCCCEEEEeCCcccCCHHHHHHHHHHHHHHcCCCEEEEEecCHHHHHhCCEEEEEECCE
Confidence 8999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EeeecChhHHhcCCCChHHHHHHHHhcc
Q 037346 1127 IKEYDSPTKLLENKSSSFAQLVAEYTSS 1154 (1156)
Q Consensus 1127 IvE~G~~~eLl~~~~g~f~~l~~~~~~~ 1154 (1156)
|+|+|+|++|++ ++|.|++|++++.+.
T Consensus 1429 ivE~g~p~~Ll~-~~~~f~~l~~~~~~~ 1455 (1490)
T TIGR01271 1429 VKQYDSIQKLLN-ETSLFKQAMSAADRL 1455 (1490)
T ss_pred EEEeCCHHHHHc-CCcHHHHHHHHhChh
Confidence 999999999997 589999999977643
|
The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se. |
| >PTZ00243 ABC transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-157 Score=1561.59 Aligned_cols=1140 Identities=29% Similarity=0.472 Sum_probs=930.8
Q ss_pred CCCCCccChhHHHHHHhHHHHHHhhccCCCCCCCCCCCCCCCchhhHHHHHHHHHHHh----------hcc---------
Q 037346 2 VTPYSNAGLFSIRSFSWMGSLIALGNKRTLDLEDVPRLDCSDSIYGVSPVLQNKLEAV----------VGV--------- 62 (1156)
Q Consensus 2 ~~p~~~~~~~s~~~f~w~~~l~~~g~~~~l~~~dl~~l~~~~~~~~~~~~~~~~~~~~----------~~~--------- 62 (1156)
..||+++||+.++++.|++|.+.++.+..|+.+|||+...+.++..+..++-+..++. .+.
T Consensus 59 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 138 (1560)
T PTZ00243 59 PVPEETASWFQRYYYGWVYEYVLLASKEQLTEEDLPPPTRDVRAHECGLRLSRAVQAAMYERNAWNCMVGAEVVSTLDAS 138 (1560)
T ss_pred CCccchhhHHHHHHHHHHHHHHHHHHHhhcccccCCCCcchhhHHHHhHHHHHHHHHHHHhhcccccccccEEEeecccc
Confidence 4689999999999999999999999999999999999998888877776665544331 100
Q ss_pred ----------------------------------c---------------------------------------------
Q 037346 63 ----------------------------------A--------------------------------------------- 63 (1156)
Q Consensus 63 ----------------------------------~--------------------------------------------- 63 (1156)
+
T Consensus 139 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 218 (1560)
T PTZ00243 139 SRGVLRWVGVPQQGGYTRMMAGVEWSVPPALRTAARSDDSGASPFFNGVAHGEHLFTPEQSNMSTLEEPTDVRLYLSSTG 218 (1560)
T ss_pred ccceEEeecccccCCCcceeeeeeeccCchhhhcccCCCCCCccccccccccccccCcccCCceeeeeeheeeEeecccc
Confidence 0
Q ss_pred --------ccCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcccchhhHH-----------
Q 037346 64 --------NRLTALRLAKVLFFSAWQEILFIAILALLYTLATYVGPYLIDNFVQYLNGRQAFEYEGYVL----------- 124 (1156)
Q Consensus 64 --------~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~p~ll~~~i~~~~~~~~~~~~g~~l----------- 124 (1156)
..++..++++++++++|+.++..++++++..++.+++|++++.++++++++......|+++
T Consensus 219 ~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~l~~P~ll~~~v~~l~~~~~~~~~g~~l~~~l~~~~~~~ 298 (1560)
T PTZ00243 219 SVVRPGPPPTPKRLSLLRTLFAALPYYVWWQIPFKLLSDVCTLTLPVLLKYFVKFLDADNATWGRGLGLVLTLFLTQLIQ 298 (1560)
T ss_pred cccCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHHHHH
Confidence 0134458999999999999999999999999999999999999999986543221122211
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccccC--CCCHHHHHHHHHHHHHH--------------------HH
Q 037346 125 CLSERHWFFQVQQFGIRFRATLFAMIYNKGLTLSGQAKQ--GNTSGEIINLIAVDAER--------------------AL 182 (1156)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~r~~l~~~i~~k~l~l~~~~~~--~~~~g~i~nl~s~D~~~--------------------~~ 182 (1156)
+++.+++.+...+.+.++|.++...+|+|+++++..... +.++|+++|+|++|+++ ++
T Consensus 299 ~~~~~~~~~~~~r~~~~~r~~L~~~if~K~l~ls~~~~~~~~~~~G~i~nl~s~Dv~~i~~~~~~~~~l~~~Pl~li~~~ 378 (1560)
T PTZ00243 299 SVCLHRFYYISIRCGLQYRSALNALIFEKCFTISSKSLAQPDMNTGRIINMMSTDVERINSFMQYCMYLWSSPMVLLLSI 378 (1560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChhhhCCCCCCHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455677788899999999999999999999999876654 56899999999999998 56
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH---------HHHHH
Q 037346 183 LILYKKLGLASIATLLATAIVMLANFPLGRLREKFQDKFMETKDRRIKATSEILRNMRILKLQGWE---------LKKNE 253 (1156)
Q Consensus 183 ~ll~~~lg~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~r~~~~~e~l~~i~~IK~~~~e---------~r~~e 253 (1156)
++||..+|+++++|+++++++++++.++++...+.++++++.+|+|++.++|+++|||+||+++|| .|+.|
T Consensus 379 ~lL~~~lG~~al~gv~vl~v~~pl~~~~~k~~~~~~~~~~~~~D~Ri~~~~E~l~gIr~IK~~~wE~~f~~ri~~~R~~E 458 (1560)
T PTZ00243 379 LLLSRLVGWCALMAVAVLLVTLPLNGAIMKHQMAARRKIAKAADARVKATNEFFSGIRIAKFMAWEPCFVANIEDKRARE 458 (1560)
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 788999999999999999999999999999999999999999999999999999999999999999 78899
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 037346 254 TAWLKKSVYTEAMISFFCWGAPTFVSVVTFGSCILLGIPLESGMILSALTTFKILQEPIYYLPESISMMIQAKVPLDRIA 333 (1156)
Q Consensus 254 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~lt~~~~ft~l~~~~~l~~pl~~l~~~~~~~~~a~~s~~Ri~ 333 (1156)
++.+++..+..++..++.+..|.++.+++|++|.+.|+.||++.+||++++|+.++.|+..+|..+..+.++.+|++||+
T Consensus 459 l~~l~~~~~~~~~~~~~~~~~p~l~~~~~f~~y~~~g~~Lt~~~vft~laL~~~L~~Pl~~lp~~~~~~~~a~vS~~RI~ 538 (1560)
T PTZ00243 459 LRYLRDVQLARVATSFVNNATPTLMIAVVFTVYYLLGHELTPEVVFPTIALLGVLRMPFFMIPWVFTTVLQFLVSIKRIS 538 (1560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999888887777777778898888899999999999999999999999999999999999999999999999999999
Q ss_pred HHhccCCCCcc------cc-----------c----------------cCC-------------------------CCCCC
Q 037346 334 SFLCLEGLQTD------VL-----------E----------------KMP-------------------------RGNSD 355 (1156)
Q Consensus 334 ~fl~~~~~~~~------~~-----------~----------------~~~-------------------------~~~~~ 355 (1156)
+||+.+|.... .. . ..+ .....
T Consensus 539 ~fL~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 618 (1560)
T PTZ00243 539 TFLECDNATCSTVQDMEEYWREQREHSTACQLAAVLENVDVTAFVPVKLPRAPKVKTSLLSRALRMLCCEQCRPTKRHPS 618 (1560)
T ss_pred HHHcCccccccccccchhhcccccccccccccccccccccccccccccccccccccccccccchhhcccccccccccccc
Confidence 99987652100 00 0 000 00001
Q ss_pred ccEEEeeeEEEeCCC-------------------------------------CCCCccccceEEeeCCeEEEEEcCCCCC
Q 037346 356 TAIEIIDGSFSWDFS-------------------------------------SPNPTLRNINLKVFHGMRVAVCGTVGSG 398 (1156)
Q Consensus 356 ~~i~~~~~~f~~~~~-------------------------------------~~~~~l~~i~l~i~~g~~~~ivG~~GsG 398 (1156)
..+.++|++|.|+.. +++++|+|+||+|++|++++|+||||||
T Consensus 619 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~isl~i~~G~~~~IiG~nGsG 698 (1560)
T PTZ00243 619 PSVVVEDTDYGSPSSASRHIVEGGTGGGHEATPTSERSAKTPKMKTDDFFELEPKVLLRDVSVSVPRGKLTVVLGATGSG 698 (1560)
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccccCCceeEeeeEEEECCCCEEEEECCCCCc
Confidence 246677777765310 1346899999999999999999999999
Q ss_pred hHHHHHHHhCCCCCCCcEEEEcCeEEEEecCCcCCCccHHHHhhcCCCCCHHHHHHHHHHhCCchhhhhCCCCCcccccc
Q 037346 399 KSSCLSCILGGVPKESGIIRLCGTKAYVAQSPWIQSGKIEENILFGKEMDRERYERVLEACSLKKDLEVLPFGDQTIIGE 478 (1156)
Q Consensus 399 KSTll~~i~g~~~~~~G~i~~~g~~~~v~Q~~~~~~~ti~eni~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~t~v~~ 478 (1156)
||||+++|+|+++|++|+|.++++++||||+||++++||+|||.|+.+++.++|++++++|+++++++.+|+|++|.+|+
T Consensus 699 KSTLL~~i~G~~~~~~G~i~~~~~i~yv~Q~~~l~~~Tv~enI~~~~~~~~~~~~~~~~~~~l~~~l~~l~~g~~t~i~~ 778 (1560)
T PTZ00243 699 KSTLLQSLLSQFEISEGRVWAERSIAYVPQQAWIMNATVRGNILFFDEEDAARLADAVRVSQLEADLAQLGGGLETEIGE 778 (1560)
T ss_pred HHHHHHHHhcCCCCCCcEEEECCeEEEEeCCCccCCCcHHHHHHcCChhhHHHHHHHHHHhhhHHHHHHhhccchHHhcC
Confidence 99999999999999999999999999999999999999999999998888889999999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHhhccCCCeeeeeCCCCCcCHHHHHHHHHHHHh--cCCCEEEEEccCCCccccCCEEEEEeCCe
Q 037346 479 RGINLSGGQKQRIQIARPLYQDADIFLLDDPFSPVDDHTGAHLFKFCWV--SSSKTVIYATHQVEFLPAADLILVIKDGK 556 (1156)
Q Consensus 479 ~g~~LSgGqkqRi~lAral~~~~~illlDep~s~lD~~~~~~i~~~~~~--~~~~tvi~vtH~~~~~~~~d~i~~l~~G~ 556 (1156)
+|.+|||||||||+||||+|++|++||||||||+||+++++++++.++. .+|+|+|++||+++.++.||+|++|++|+
T Consensus 779 ~g~~LSGGQkqRvaLARAl~~~p~illLDEP~saLD~~~~~~i~~~~~~~~~~~~TvIlvTH~~~~~~~ad~ii~l~~G~ 858 (1560)
T PTZ00243 779 KGVNLSGGQKARVSLARAVYANRDVYLLDDPLSALDAHVGERVVEECFLGALAGKTRVLATHQVHVVPRADYVVALGDGR 858 (1560)
T ss_pred CCCCCCHHHHHHHHHHHHHhcCCCEEEEcCccccCCHHHHHHHHHHHHHHhhCCCEEEEEeCCHHHHHhCCEEEEEECCE
Confidence 9999999999999999999999999999999999999999999887643 56899999999999998999999999999
Q ss_pred EEEccChHHHHhcCcchHHHHHhhhhhccCCCCCCCCCcccccccccCCCCCCCcccchhcccccCCCCcccccCccCcc
Q 037346 557 ITQAGKYSDILNSGTDFMELVGAHKQALSGLDSIDRGPVSERKSINKENDGTSTTNEIVNKEENKNFQSDDEAALPKGQL 636 (1156)
Q Consensus 557 i~~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 636 (1156)
++++|+++++++.. .+.++........+..+...... ....................... ................+
T Consensus 859 i~~~G~~~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~l 935 (1560)
T PTZ00243 859 VEFSGSSADFMRTS-LYATLAAELKENKDSKEGDADAE-VAEVDAAPGGAVDHEPPVAKQEG-NAEGGDGAALDAAAGRL 935 (1560)
T ss_pred EEEecCHHHHHhCh-HHHHHHHhhcccccccccccccc-ccccccccccccccccccccccc-ccccccccccccccchh
Confidence 99999999998643 35444432111100000000000 00000000000000000000000 00000000001111234
Q ss_pred hhHHHHhcCcccHHHHHHHHHHhccchHHHHHHHHHHHHHHHHhhhhhhhhhccccccccCCCCCchhhHHHHHH-----
Q 037346 637 VQEEEREKGKVGFSVYWKYMTTAYGGVLVPFILLAQIIFQIFQIGSNYWMAWATPVAKDVNPAVGASTLIIVYVG----- 711 (1156)
Q Consensus 637 ~~~e~~~~g~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~----- 711 (1156)
..+|++..|.++|.+|+.|++..++...+.+++++.++.+++..+.++|+++|........ ...++.+|++
T Consensus 936 ~~~e~~~~g~v~~~~y~~Y~~~~g~~~~~~~~l~~~~~~~~~~~~~~~wl~~w~~~~~~~~----~~~~l~~y~~~~~~~ 1011 (1560)
T PTZ00243 936 MTREEKASGSVPWSTYVAYLRFCGGLHAAGFVLATFAVTELVTVSSGVWLSMWSTRSFKLS----AATYLYVYLGIVLLG 1011 (1560)
T ss_pred hhHHHHhcCcccHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCCC----cccHHHHHHHHHHHH
Confidence 5566777899999999999998776555545555556667788889999998875321111 1112222211
Q ss_pred -------------HHHHHHHHHHHHHHHHhccccccccccccccchhhhhcccccccchhhhcccchHHHHHHHHHHHHH
Q 037346 712 -------------AGYKTATQLFNKMHVCIFRAPMYFFDSTPSGRILNRVSENVKWADQSAADMDIPYDIGAFAFSMIQL 778 (1156)
Q Consensus 712 -------------~~~~~~~~l~~~l~~~ll~~p~~ff~~~~~G~il~R~s~d~~~~d~~~~d~~l~~~~~~~~~~~~~~ 778 (1156)
.+.++++++|++++++++++|+.|||++++|+|+|||+ .|+..+|..++..+..++..++.+
T Consensus 1012 ~~~~~l~~~~~~~~~~~~~~~l~~~l~~~ll~~p~~ffd~~~~G~ilnR~s-----~Di~~id~~l~~~l~~~~~~~~~~ 1086 (1560)
T PTZ00243 1012 TFSVPLRFFLSYEAMRRGSRNMHRDLLRSVSRGTMSFFDTTPLGRILNRFS-----RDIDILDNTLPMSYLYLLQCLFSI 1086 (1560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChhhccCCCccHHHHHHH-----hhHHHHHHHHHHHHHHHHHHHHHH
Confidence 34577889999999999999999999999999999999 899999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhChHHHHHHhhccchhhhhhcchHHHHHHHHHHH
Q 037346 779 LGIIVVMSLVAWQVLIVFVPVIATFIWYQQYYITSTRELSRLIGVCKAPVIQQFSETISGSTTIRSLDQELRFRDTNMKL 858 (1156)
Q Consensus 779 ~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~e~l~Gi~tIra~~~e~~~~~~~~~~ 858 (1156)
++.++++++.+|.++++++|++++++.+..+|.+..++++|....+++|+++++.|+++|+.|||+|+.++++.+++.+.
T Consensus 1087 i~~li~~~~~~p~~~~~~i~~~~~~~~i~~~~~~~~r~~~r~~~~~~s~l~s~~~E~l~G~~tIraf~~e~~~~~~~~~~ 1166 (1560)
T PTZ00243 1087 CSSILVTSASQPFVLVALVPCGYLYYRLMQFYNSANREIRRIKSVAKSPVFTLLEEALQGSATITAYGKAHLVMQEALRR 1166 (1560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHcCHHHHHhCccHHHHHHHHHHH
Confidence 99999988888887777888887888888999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HcCCC-----------------------ccchHHHHHHH
Q 037346 859 IDEYSRPKFHIAGAMEWLRFCIDMLSSITFAFSLAFLI---SVPNG-----------------------IIHPYKNLERK 912 (1156)
Q Consensus 859 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~---~~~~~-----------------------~~~~~~~~~~~ 912 (1156)
++.+.++.+......+|+..+++++..+...+++.+.+ ....+ ......+++..
T Consensus 1167 ~d~~~~~~~~~~~~~~w~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~l~~a~~l~~~l~~l~~~~~~le~~ 1246 (1560)
T PTZ00243 1167 LDVVYSCSYLENVANRWLGVRVEFLSNIVVTVIALIGVIGTMLRATSQEIGLVSLSLTMAMQTTATLNWLVRQVATVEAD 1246 (1560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999988776554332221111 00010 01112578899
Q ss_pred hHHHHHHHHhhc-CCCCCcccc-----------------------cCCCCC---CCCCCCCeEEEEEEEEEEcCCCCc--
Q 037346 913 IISVERILQCAC-IPSEPALVI-----------------------EATKPN---NSRPSHGEVNIRHLQVRYAPNLPL-- 963 (1156)
Q Consensus 913 ~~s~~Ri~~~~~-~~~e~~~~~-----------------------~~~~~~---~~~p~~g~I~~~~Vsf~Y~~~~~~-- 963 (1156)
+.+++|+.++.+ .|+|+.... +...++ +.||..|.|+|+||+|+|+++.++
T Consensus 1247 ~~s~eRi~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~I~f~nVsf~Y~~~~~~vL 1326 (1560)
T PTZ00243 1247 MNSVERLLYYTDEVPHEDMPELDEEVDALERRTGMAADVTGTVVIEPASPTSAAPHPVQAGSLVFEGVQMRYREGLPLVL 1326 (1560)
T ss_pred HHHHHHHHHHHhcCCccccccccccccccccccccccccccccccccCCCcccCCCCCCCCeEEEEEEEEEeCCCCCcee
Confidence 999999999986 343321100 001111 235567899999999999766543
Q ss_pred -------------eeeCCCCCCHHHHHHHHhhcccCCCceEEEcCeeCCCCChHHHhhcCeeeccccccccccchhccCC
Q 037346 964 -------------VLRGRTGSGKSTLIQTLFRIVESTAGHILIDGKDISLIGLHDLRTRLSIIPQDPTMFEGTTRSNLDP 1030 (1156)
Q Consensus 964 -------------vL~G~SGsGKSTL~~lL~rl~~p~~G~I~idG~di~~i~~~~LR~~i~~VpQdp~LF~gTIr~Nl~~ 1030 (1156)
+|+||||||||||+++|+|+|+|++|+|+|||+||+++++++||++|++|||||+||+||||+||+|
T Consensus 1327 ~~vsf~I~~GekVaIVGrTGSGKSTLl~lLlrl~~p~~G~I~IDG~di~~i~l~~LR~~I~iVpQdp~LF~gTIreNIdp 1406 (1560)
T PTZ00243 1327 RGVSFRIAPREKVGIVGRTGSGKSTLLLTFMRMVEVCGGEIRVNGREIGAYGLRELRRQFSMIPQDPVLFDGTVRQNVDP 1406 (1560)
T ss_pred ecceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEcccCCHHHHHhcceEECCCCccccccHHHHhCc
Confidence 4559999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHcCCChHHHhhcCCcccc------------------ccccccC-CCEEEEecCCcCCCHHHHHHHH
Q 037346 1031 LEEHADEQIWEALDKCQLGDEVRKKKGKLDSQ------------------GRVLLKK-SKVLVLDEATASVDTATDNQIQ 1091 (1156)
Q Consensus 1031 ~~~~~deei~~al~~~~l~~~i~~lp~gl~s~------------------ARALLr~-~~ILiLDEaTS~LD~~te~~I~ 1091 (1156)
+++++|+|||+||++|+++++|.++|+|||+. |||||++ |+|||||||||+||++||+.||
T Consensus 1407 ~~~~sdeeI~~Al~~a~l~~~I~~lp~Gldt~vge~G~nLSgGQrQrLaLARALL~~~~~ILlLDEATSaLD~~te~~Iq 1486 (1560)
T PTZ00243 1407 FLEASSAEVWAALELVGLRERVASESEGIDSRVLEGGSNYSVGQRQLMCMARALLKKGSGFILMDEATANIDPALDRQIQ 1486 (1560)
T ss_pred ccCCCHHHHHHHHHHCCChHHHhhCcccccccccCCcCcCCHHHHHHHHHHHHHhcCCCCEEEEeCCCccCCHHHHHHHH
Confidence 98999999999999999999999999999975 8999996 8999999999999999999999
Q ss_pred HHHHHhcCCceEEEeecCcccccccCEEEEEeCcEEeeecChhHHhcCCCChHHHHHHHHhc
Q 037346 1092 QTLRQHFSDCTVVTIAHRITSVLDSAMVLLLNHGLIKEYDSPTKLLENKSSSFAQLVAEYTS 1153 (1156)
Q Consensus 1092 ~~l~~~~~~~TvI~IaHrl~ti~~~D~I~Vl~~G~IvE~G~~~eLl~~~~g~f~~l~~~~~~ 1153 (1156)
++|++.+++||||+||||++|+.+||+|+|||+|+|+|+|+|+||+++++|.|++|++++.+
T Consensus 1487 ~~L~~~~~~~TvI~IAHRl~ti~~~DrIlVLd~G~VvE~Gt~~eLl~~~~~~f~~l~~~~~~ 1548 (1560)
T PTZ00243 1487 ATVMSAFSAYTVITIAHRLHTVAQYDKIIVMDHGAVAEMGSPRELVMNRQSIFHSMVEALGR 1548 (1560)
T ss_pred HHHHHHCCCCEEEEEeccHHHHHhCCEEEEEECCEEEEECCHHHHHhCCCCHHHHHHHHhCh
Confidence 99999999999999999999999999999999999999999999998778999999987654
|
|
| >KOG0055 consensus Multidrug/pheromone exporter, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.1e-143 Score=1307.73 Aligned_cols=1006 Identities=22% Similarity=0.281 Sum_probs=737.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccccCCCCHHHHHHHHHHHHHH---------------------HHH
Q 037346 125 CLSERHWFFQVQQFGIRFRATLFAMIYNKGLTLSGQAKQGNTSGEIINLIAVDAER---------------------ALL 183 (1156)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~r~~l~~~i~~k~l~l~~~~~~~~~~g~i~nl~s~D~~~---------------------~~~ 183 (1156)
.+...+|.+...|+..++|..+...+.+|...| +|.+.+|++.+.++.|+++ ++.
T Consensus 89 ~~q~~c~~~~geRq~~riR~~yl~~iLrQdi~~----fD~~~~g~~~~~l~~d~~~I~d~~geKvg~~i~~~~~fi~g~i 164 (1228)
T KOG0055|consen 89 FIQVSCWMRTGERQTARIRSKYLKAILRQDIGW----FDTNSTGELVTRLSDDIELIQDAIGEKVGNFIQLLATFIAGFV 164 (1228)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhCccce----eecccccceEEEecCcHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334567778889999999998888888876655 4556669999999999988 111
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH-----HHHHHHHH
Q 037346 184 ILYKKLGLASIATLLATAIVMLANFPLGRLREKFQDKFMETKDRRIKATSEILRNMRILKLQGWELK-----KNETAWLK 258 (1156)
Q Consensus 184 ll~~~lg~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~r~~~~~e~l~~i~~IK~~~~e~r-----~~e~~~~~ 258 (1156)
+-+..-...+++++.+.+++......+++.+.+...+.++...+.-++++|++.+||+|-+|+.|.+ ..+++..+
T Consensus 165 i~F~~~W~Ltlv~l~~~Pli~~~g~~~a~~~~~~t~ke~~~ya~Ag~iaEe~i~~iRTV~af~gq~~e~~ry~~~L~~~~ 244 (1228)
T KOG0055|consen 165 IGFYYGWKLTLVMLSFIPLIAIAGGLLARFLSKLTEKEQEAYAKAGSIAEEVISSIRTVYAFNGEKKEIERYSKALENAL 244 (1228)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhcCcHHHHHHHHHHHHHHH
Confidence 1111111233444555555566666777878888888888889999999999999999999999833 22333333
Q ss_pred HHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 037346 259 KSVYTEAMISFF------CWGAPTFVSVVTFGSCILLGIPLESGMILSALTTFKILQEPIYYLPESISMMIQAKVPLDRI 332 (1156)
Q Consensus 259 ~~~~~~~~~~~~------~~~~~~~~~~~~f~~~~~~~~~lt~~~~ft~l~~~~~l~~pl~~l~~~~~~~~~a~~s~~Ri 332 (1156)
+.....++...+ ++........+|||..++..+..++|++++++..+......+.+..+.+..+..|++|+.+|
T Consensus 245 k~gi~~g~~~G~~~G~~~~~~~~~~a~~~WyG~~li~~~~~~~g~v~~v~~~vl~g~~sLgqa~p~l~~f~~a~~aa~~I 324 (1228)
T KOG0055|consen 245 KFGIKKGLFKGLGLGFTFFLLFASYALAFWYGSTLILNGGYNGGDVITVFFSVLIGGMSLGQASPHLSAFAKARAAAYRI 324 (1228)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcCCCCCceEEEEEeehhhhhhhhhccccchHHHhccccchHHH
Confidence 333333322211 12223345577888777777889999999999888888899999999999999999999999
Q ss_pred HHHhccCCC-CccccccCCCCCCCccEEEeeeEEEeCCCCCCCccccceEEeeCCeEEEEEcCCCCChHHHHHHHhCCCC
Q 037346 333 ASFLCLEGL-QTDVLEKMPRGNSDTAIEIIDGSFSWDFSSPNPTLRNINLKVFHGMRVAVCGTVGSGKSSCLSCILGGVP 411 (1156)
Q Consensus 333 ~~fl~~~~~-~~~~~~~~~~~~~~~~i~~~~~~f~~~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKSTll~~i~g~~~ 411 (1156)
++.++..+. +.............+.|+|+||+|+||.+++.++|+|+||+|++|++++|||||||||||++++|.|+|+
T Consensus 325 ~~~i~~~~~i~~~~~~~~~~~~~~g~ief~nV~FsYPsRpdv~Il~g~sl~i~~G~~valVG~SGsGKST~i~LL~Rfyd 404 (1228)
T KOG0055|consen 325 FETIDRKPSIDPYSKGGRVLSSIKGEIEFRNVCFSYPSRPDVKILKGVSLKIPSGQTVALVGPSGSGKSTLIQLLARFYD 404 (1228)
T ss_pred HHHhcCCCCCCcccccCCcccccccceEEEEEEecCCCCCcchhhCCeEEEeCCCCEEEEECCCCCCHHHHHHHHHHhcC
Confidence 999987543 2222122233345678999999999999988999999999999999999999999999999999999999
Q ss_pred CCCcEEEEcC-------------eEEEEecCCcCCCccHHHHhhcCCC-CCHHHHHHHHHHhCCchhhhhCCCCCccccc
Q 037346 412 KESGIIRLCG-------------TKAYVAQSPWIQSGKIEENILFGKE-MDRERYERVLEACSLKKDLEVLPFGDQTIIG 477 (1156)
Q Consensus 412 ~~~G~i~~~g-------------~~~~v~Q~~~~~~~ti~eni~~~~~-~~~~~~~~~~~~~~l~~~~~~~~~g~~t~v~ 477 (1156)
|++|+|.+|| ++|.|+|+|.+|++||+|||.||++ .+.++..++++.+...+++..+|+|++|.+|
T Consensus 405 P~~G~V~idG~di~~~~~~~lr~~iglV~QePvlF~~tI~eNI~~G~~dat~~~i~~a~k~ana~~fi~~lp~g~~T~vg 484 (1228)
T KOG0055|consen 405 PTSGEVLIDGEDIRNLNLKWLRSQIGLVSQEPVLFATTIRENIRYGKPDATREEIEEAAKAANAHDFILKLPDGYDTLVG 484 (1228)
T ss_pred CCCceEEEcCccchhcchHHHHhhcCeeeechhhhcccHHHHHhcCCCcccHHHHHHHHHHccHHHHHHhhHHhhccccc
Confidence 9999999999 3799999999999999999999985 5788899999999999999999999999999
Q ss_pred cCCCCCCHHHHHHHHHHHhhccCCCeeeeeCCCCCcCHHHHHHHHHHHHh-cCCCEEEEEccCCCccccCCEEEEEeCCe
Q 037346 478 ERGINLSGGQKQRIQIARPLYQDADIFLLDDPFSPVDDHTGAHLFKFCWV-SSSKTVIYATHQVEFLPAADLILVIKDGK 556 (1156)
Q Consensus 478 ~~g~~LSgGqkqRi~lAral~~~~~illlDep~s~lD~~~~~~i~~~~~~-~~~~tvi~vtH~~~~~~~~d~i~~l~~G~ 556 (1156)
|+|.+|||||||||||||||.++|+||||||||||||+++++.+.+.+-+ .+|+|.|+|+||++++++||+|++|++|+
T Consensus 485 e~g~qLSGGQKQRIAIARalv~~P~ILLLDEaTSaLD~~se~~Vq~ALd~~~~grTTivVaHRLStIrnaD~I~v~~~G~ 564 (1228)
T KOG0055|consen 485 ERGVQLSGGQKQRIAIARALVRNPKILLLDEATSALDAESERVVQEALDKASKGRTTIVVAHRLSTIRNADKIAVMEEGK 564 (1228)
T ss_pred CCCCCCChHHHHHHHHHHHHHhCCCEEEecCcccccCHHHHHHHHHHHHHhhcCCeEEEEeeehhhhhccCEEEEEECCE
Confidence 99999999999999999999999999999999999999998877555533 68999999999999999999999999999
Q ss_pred EEEccChHHHHhcCcchHHHHHhhhhhccCCC-CCCCCCcccccccccCCCCCCCcccchhcccccCCC-CcccccCccC
Q 037346 557 ITQAGKYSDILNSGTDFMELVGAHKQALSGLD-SIDRGPVSERKSINKENDGTSTTNEIVNKEENKNFQ-SDDEAALPKG 634 (1156)
Q Consensus 557 i~~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~ 634 (1156)
|+|.|+|+||++..+.|.++++.+.......+ +.++..........+.+. ............... ...+.+....
T Consensus 565 IvE~G~h~ELi~~~G~Y~~lv~~Q~~~~~~~~~~~~~~~~~~~~~s~~~s~---~~~~~~~~~~~~~~~~~~~~~e~~~~ 641 (1228)
T KOG0055|consen 565 IVEQGTHDELIALGGIYSSLVRLQELEKAAEDEEEEESLKEERSRSLKSSS---SSPSLSRGSNRSNLLSVKPEGEDPEE 641 (1228)
T ss_pred EEEecCHHHHHhccchHHHHHHHHhhhhhhhccccccchhhhhhhcccccc---ccccccCCcccccccccccccccccc
Confidence 99999999999988999999987754432111 000000000000000000 000000000000000 0000000000
Q ss_pred cchhHHHHhcCcccHHHHHHHHHHhccchHHHHHHHHHHHHHH----HHhhhhhhhhhcc-ccccccCCCCCchhhHH--
Q 037346 635 QLVQEEEREKGKVGFSVYWKYMTTAYGGVLVPFILLAQIIFQI----FQIGSNYWMAWAT-PVAKDVNPAVGASTLII-- 707 (1156)
Q Consensus 635 ~~~~~e~~~~g~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~l~~~~-~~~~~~~~~~~~~~~~~-- 707 (1156)
.. ..+. ...++....++.+. .+.++.+-.+++++... +.......+.... ...+........+.++.
T Consensus 642 ~~-~~~~---~~~s~~~i~k~~~p--e~~~l~lG~i~a~i~G~~~P~fa~~~s~~~~~f~~~~~~~~~~~~~~~al~f~~ 715 (1228)
T KOG0055|consen 642 PV-SEED---EKVSFWRIFKLNKP--EWPYLLLGSLGAAIRGATYPLFAYVFSQVLEAFYPPDDDELKREVRAWALIFLG 715 (1228)
T ss_pred cc-cccc---ccccHHHHHHhccc--hhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHH
Confidence 00 0111 12222222222211 11111111111111111 1111111111111 00000000000111111
Q ss_pred --------------HHHHHHHHHHHHHHHHHHHHhcccccccccc--ccccchhhhhcccccccchhhhcccchHHHHHH
Q 037346 708 --------------VYVGAGYKTATQLFNKMHVCIFRAPMYFFDS--TPSGRILNRVSENVKWADQSAADMDIPYDIGAF 771 (1156)
Q Consensus 708 --------------~~~~~~~~~~~~l~~~l~~~ll~~p~~ff~~--~~~G~il~R~s~d~~~~d~~~~d~~l~~~~~~~ 771 (1156)
.+...|.+...++|.++|+++++++++|||. |. |.|.+|+. .|...+...+...+..+
T Consensus 716 l~~~~~i~~~~q~~~f~~~ge~Lt~R~R~~~F~~ll~qd~~wFD~~~ns-g~l~~RLa-----~Da~~vr~~v~~rl~~v 789 (1228)
T KOG0055|consen 716 LGIVSGITNFLQHYFFGIAGEKLTKRLRSMMFRALLRQEVGWFDDPENS-GALSSRLA-----TDASNVRAAVGDRLSLV 789 (1228)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcccCCCccc-hHHHHHHh-----cchHHHHHHHHHHHHHH
Confidence 0111688999999999999999999999997 56 99999999 89999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhChHHHHHHhhccchhhhhhcchHHHH
Q 037346 772 AFSMIQLLGIIVVMSLVAWQVLIVFVPVIATFIWYQQYYITSTRELSRLIGVCKAPVIQQFSETISGSTTIRSLDQELRF 851 (1156)
Q Consensus 772 ~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~e~l~Gi~tIra~~~e~~~ 851 (1156)
++.+..++..+++.++++|.++++++.+.++.......+.+......+..............|++++++||++|++|++|
T Consensus 790 v~~~~~~~~~iiiaf~~~W~lalv~la~~Pll~~~~~~~~~~~~~~~~~~~~~~~ea~~iA~eai~NIrTV~al~~e~~~ 869 (1228)
T KOG0055|consen 790 VQNIAAVIIGIIIAFIYGWRLALVVLATFPLLILSGYLQKKFLKGFSKDDKKAYEEASKIAIEAVSNIRTVAALCAEEKF 869 (1228)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhHHHHHHHhhHHHH
Confidence 99999999999999999999987755444444333333333333333344444556778899999999999999999999
Q ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------------------HHHcCCCccchHH
Q 037346 852 RDTNMKLIDEYSRPKFHIAGAMEWLRFCIDMLSSITFAFSLAF------------------------LISVPNGIIHPYK 907 (1156)
Q Consensus 852 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~------------------------~~~~~~~~~~~~~ 907 (1156)
.+.|.+.++...+..++............+.+..+..+++..+ .........+..+
T Consensus 870 ~~~y~~~l~~p~~~~~~~~~i~gl~f~~sqs~~~~~~A~~f~~G~~Li~~g~~~~~~~~~vf~~l~~ta~~~~~~~s~~P 949 (1228)
T KOG0055|consen 870 MELYKEELEKPRKSSFKRGLISGLGFGFSQSLLFFVYALSFWYGARLISNGEMTFEDVFRVFMALSFTAMALGQASSYAP 949 (1228)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhcCCcCHHHHHHHHHHHHHHHHHHHHHHhhCc
Confidence 9999999988877665433222211111111111111110000 0000001122236
Q ss_pred HHHHHhHHHHHHHHhhcCCCCCcccccCCCCCCCCCCCCeEEEEEEEEEEcC----------------CCCceeeCCCCC
Q 037346 908 NLERKIISVERILQCACIPSEPALVIEATKPNNSRPSHGEVNIRHLQVRYAP----------------NLPLVLRGRTGS 971 (1156)
Q Consensus 908 ~~~~~~~s~~Ri~~~~~~~~e~~~~~~~~~~~~~~p~~g~I~~~~Vsf~Y~~----------------~~~~vL~G~SGs 971 (1156)
++.++..|+.+++++++.++.-+...+ ......+.+|+|+|+||+|+||. |..++|+|||||
T Consensus 950 d~~ka~~Aa~~iF~i~dr~~~i~~~~~--~~~~~~~~~G~I~~~~V~F~YPsRP~~~Il~~l~l~i~~GqTvALVG~SGs 1027 (1228)
T KOG0055|consen 950 DISKAKIAAGSIFEILDRKPTIDPDST--SGGKLPNVKGDIEFRNVSFAYPTRPDVPVLNNLSLSIRAGQTVALVGPSGS 1027 (1228)
T ss_pred HHHHHHHHHHHHHHHhcCCCCCCCCCC--CCCccccceeEEEEeeeEeeCCCCCCchhhcCCcEEecCCCEEEEECCCCC
Confidence 788889999999999987664322111 11111235799999999999962 233578899999
Q ss_pred CHHHHHHHHhhcccCCCceEEEcCeeCCCCChHHHhhcCeeeccccccccccchhccCCC-CCCCHHHHHHHHHHcCCCh
Q 037346 972 GKSTLIQTLFRIVESTAGHILIDGKDISLIGLHDLRTRLSIIPQDPTMFEGTTRSNLDPL-EEHADEQIWEALDKCQLGD 1050 (1156)
Q Consensus 972 GKSTL~~lL~rl~~p~~G~I~idG~di~~i~~~~LR~~i~~VpQdp~LF~gTIr~Nl~~~-~~~~deei~~al~~~~l~~ 1050 (1156)
||||++.+|.|||+|.+|.|.|||+||+++++++||++||+|.|||.||++||||||.++ ...+++||.+|++.|++|+
T Consensus 1028 GKSTvI~LLeRfYdp~~G~V~IDg~dik~lnl~~LR~~i~lVsQEP~LF~~TIrENI~YG~~~vs~~eIi~Aak~ANaH~ 1107 (1228)
T KOG0055|consen 1028 GKSTVISLLERFYDPDAGKVKIDGVDIKDLNLKWLRKQIGLVSQEPVLFNGTIRENIAYGSEEVSEEEIIEAAKLANAHN 1107 (1228)
T ss_pred CHHHHHHHHHHhcCCCCCeEEECCcccccCCHHHHHHhcceeccCchhhcccHHHHHhccCCCCCHHHHHHHHHHhhhHH
Confidence 999999999999999999999999999999999999999999999999999999999998 4568999999999999999
Q ss_pred HHHhhcCCcccc------------------ccccccCCCEEEEecCCcCCCHHHHHHHHHHHHHhcCCceEEEeecCccc
Q 037346 1051 EVRKKKGKLDSQ------------------GRVLLKKSKVLVLDEATASVDTATDNQIQQTLRQHFSDCTVVTIAHRITS 1112 (1156)
Q Consensus 1051 ~i~~lp~gl~s~------------------ARALLr~~~ILiLDEaTS~LD~~te~~I~~~l~~~~~~~TvI~IaHrl~t 1112 (1156)
||.++|+||||. ||||+|||+|||||||||+||.++|+.||++|++...++|+|+|||||+|
T Consensus 1108 FI~sLP~GyDT~vGerG~QLSGGQKQRIAIARAilRnPkILLLDEATSALDseSErvVQeALd~a~~gRT~IvIAHRLST 1187 (1228)
T KOG0055|consen 1108 FISSLPQGYDTRVGERGVQLSGGQKQRIAIARAILRNPKILLLDEATSALDSESERVVQEALDRAMEGRTTIVIAHRLST 1187 (1228)
T ss_pred HHhcCcCcccCccCcccCcCCchHHHHHHHHHHHHcCCCeeeeeccchhhhhhhHHHHHHHHHHhhcCCcEEEEecchhh
Confidence 999999999986 89999999999999999999999999999999999999999999999999
Q ss_pred ccccCEEEEEeCcEEeeecChhHHhcCCCChHHHHHHHHh
Q 037346 1113 VLDSAMVLLLNHGLIKEYDSPTKLLENKSSSFAQLVAEYT 1152 (1156)
Q Consensus 1113 i~~~D~I~Vl~~G~IvE~G~~~eLl~~~~g~f~~l~~~~~ 1152 (1156)
|++||.|.|+++|+|+|+|||++|++ ++|.|++|++.+.
T Consensus 1188 IqnaD~I~Vi~~G~VvE~GtH~~L~~-~~G~Y~~Lv~~q~ 1226 (1228)
T KOG0055|consen 1188 IQNADVIAVLKNGKVVEQGTHDELLA-KRGIYFRLVQLQS 1226 (1228)
T ss_pred hhcCCEEEEEECCEEEecccHHHHHh-CCCchHHHhhhcc
Confidence 99999999999999999999999998 6899999998764
|
|
| >PTZ00265 multidrug resistance protein (mdr1); Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-124 Score=1236.54 Aligned_cols=1072 Identities=18% Similarity=0.207 Sum_probs=736.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcccc-hh-hHH-----HHHHHHHHHHHHHHHHHHH
Q 037346 71 LAKVLFFSAWQEILFIAILALLYTLATYVGPYLIDNFVQYLNGRQAFEY-EG-YVL-----CLSERHWFFQVQQFGIRFR 143 (1156)
Q Consensus 71 l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~p~ll~~~i~~~~~~~~~~~-~g-~~l-----~~~~~~~~~~~~~~~~~~r 143 (1156)
+++...+.+++.+++++++.++..++..+.|++++.+++.+........ .. +++ .++.....+...+++.++.
T Consensus 50 ~~~~~~~~~~~~~~i~~i~~~~~~~~~p~~~~i~g~iid~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~ 129 (1466)
T PTZ00265 50 PFKCLPASHRKLLGVSFVCATISGGTLPFFVSVFGVIMKNMNLGENVNDIIFSLVLIGIFQFILSFISSFCMDVVTTKIL 129 (1466)
T ss_pred HHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333344567778888889999999999999999999997642211111 11 111 2222233345677888899
Q ss_pred HHHHHHHHHHHhcCCccccCCCCHHHHHHHHHHHHHH---------------------HHHH-HHHHHHHHHHHHHHHHH
Q 037346 144 ATLFAMIYNKGLTLSGQAKQGNTSGEIINLIAVDAER---------------------ALLI-LYKKLGLASIATLLATA 201 (1156)
Q Consensus 144 ~~l~~~i~~k~l~l~~~~~~~~~~g~i~nl~s~D~~~---------------------~~~l-l~~~lg~~~l~~~~~~~ 201 (1156)
..++..+|+++++++...+++.+.|++++.++.|++. ++++ ++..+. .+++.+++++
T Consensus 130 ~~lR~~~~~~ll~~~~~~fd~~~~~~l~s~l~~d~~~i~~~i~~~~~~~~~~~~~~i~~~i~~~~~sw~-Lalv~l~~~p 208 (1466)
T PTZ00265 130 KTLKLEFLKSVFYQDGQFHDNNPGSKLTSDLDFYLEQVNAGIGTKFITIFTYASAFLGLYIWSLFKNAR-LTLCITCVFP 208 (1466)
T ss_pred HHHHHHHHHHHHCCCHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH-HHHHHHHHHH
Confidence 9999999999999999999999999999999999876 0000 011110 1122222333
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH---HHH--HHHHH----HHHHHHHHHHHHHH
Q 037346 202 IVMLANFPLGRLREKFQDKFMETKDRRIKATSEILRNMRILKLQGWELK---KNE--TAWLK----KSVYTEAMISFFCW 272 (1156)
Q Consensus 202 ~~~~~~~~~~~~~~~~~~~~~~~~d~r~~~~~e~l~~i~~IK~~~~e~r---~~e--~~~~~----~~~~~~~~~~~~~~ 272 (1156)
+++++...+.+...+..++..+..++..+.+.|.++||++||.|+.|.+ +-+ ..... +.....++...+..
T Consensus 209 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~tVka~~~e~~~~~~f~~~~~~~~~~~~k~~~~~~~~~~~~~ 288 (1466)
T PTZ00265 209 LIYICGVICNKKVKINKKTSLLYNNNTMSIIEEALVGIRTVVSYCGEKTILKKFNLSEKLYSKYILKANFMESLHIGMIN 288 (1466)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHhccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344445556666667777777778889999999999999999999811 111 11111 11111121111111
Q ss_pred --HHHHHHHHHHHHHHHHhCC--------CccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCC
Q 037346 273 --GAPTFVSVVTFGSCILLGI--------PLESGMILSALTTFKILQEPIYYLPESISMMIQAKVPLDRIASFLCLEGLQ 342 (1156)
Q Consensus 273 --~~~~~~~~~~f~~~~~~~~--------~lt~~~~ft~l~~~~~l~~pl~~l~~~~~~~~~a~~s~~Ri~~fl~~~~~~ 342 (1156)
.....+.++|||.+.+..+ .++++.+++++........++..+.+.+..+..+.+|++||.++++.++..
T Consensus 289 ~~~~~~~~l~~~~G~~lv~~g~~~~~~~~~~t~g~v~~~~~~~l~~~~~l~~i~~~~~~~~~a~~a~~ri~~ii~~~~~~ 368 (1466)
T PTZ00265 289 GFILASYAFGFWYGTRIIISDLSNQQPNNDFHGGSVISILLGVLISMFMLTIILPNITEYMKSLEATNSLYEIINRKPLV 368 (1466)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCcccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCC
Confidence 1122345678888877653 578899888776666656666777778899999999999999999875432
Q ss_pred ccccccCCCCCCCccEEEeeeEEEeCCCCCCCccccceEEeeCCeEEEEEcCCCCChHHHHHHHhCCCCCCCcEEEEc-C
Q 037346 343 TDVLEKMPRGNSDTAIEIIDGSFSWDFSSPNPTLRNINLKVFHGMRVAVCGTVGSGKSSCLSCILGGVPKESGIIRLC-G 421 (1156)
Q Consensus 343 ~~~~~~~~~~~~~~~i~~~~~~f~~~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKSTll~~i~g~~~~~~G~i~~~-g 421 (1156)
+......... ....|+++|++|+|+.+++.++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++ |
T Consensus 369 ~~~~~~~~~~-~~~~I~~~nVsf~Y~~~~~~~vL~~isl~i~~Ge~vaIvG~SGsGKSTLl~lL~gl~~p~~G~I~i~~g 447 (1466)
T PTZ00265 369 ENNDDGKKLK-DIKKIQFKNVRFHYDTRKDVEIYKDLNFTLTEGKTYAFVGESGCGKSTILKLIERLYDPTEGDIIINDS 447 (1466)
T ss_pred CCCCCCccCC-CCCcEEEEEEEEEcCCCCCCceeccceEEEcCCCEEEEECCCCCCHHHHHHHHHHhccCCCCeEEEeCC
Confidence 2111111111 1236999999999985444579999999999999999999999999999999999999999999994 4
Q ss_pred -------------eEEEEecCCcCCCccHHHHhhcCCC------------------------------------------
Q 037346 422 -------------TKAYVAQSPWIQSGKIEENILFGKE------------------------------------------ 446 (1156)
Q Consensus 422 -------------~~~~v~Q~~~~~~~ti~eni~~~~~------------------------------------------ 446 (1156)
+++||+|+|.+|++||+|||.+|..
T Consensus 448 ~~i~~~~~~~lr~~Ig~V~Q~~~LF~~TI~eNI~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 527 (1466)
T PTZ00265 448 HNLKDINLKWWRSKIGVVSQDPLLFSNSIKNNIKYSLYSLKDLEALSNYYNEDGNDSQENKNKRNSCRAKCAGDLNDMSN 527 (1466)
T ss_pred cchhhCCHHHHHHhccEecccccchhccHHHHHHhcCCCccccchhccccccccccccccccccccccccccchhhhccc
Confidence 2699999999999999999999741
Q ss_pred ----------------CCHHHHHHHHHHhCCchhhhhCCCCCccccccCCCCCCHHHHHHHHHHHhhccCCCeeeeeCCC
Q 037346 447 ----------------MDRERYERVLEACSLKKDLEVLPFGDQTIIGERGINLSGGQKQRIQIARPLYQDADIFLLDDPF 510 (1156)
Q Consensus 447 ----------------~~~~~~~~~~~~~~l~~~~~~~~~g~~t~v~~~g~~LSgGqkqRi~lAral~~~~~illlDep~ 510 (1156)
.+++++.++++.+++++++..+|+|++|.+|++|.+|||||||||+||||++++|+||||||||
T Consensus 528 ~~~~~~~l~~~~~~~~~~~~~v~~a~~~~~l~~~i~~lp~g~dT~vg~~g~~LSGGQkQRiaIARAll~~P~ILlLDEpT 607 (1466)
T PTZ00265 528 TTDSNELIEMRKNYQTIKDSEVVDVSKKVLIHDFVSALPDKYETLVGSNASKLSGGQKQRISIARAIIRNPKILILDEAT 607 (1466)
T ss_pred ccchhhhhhcccccccCCHHHHHHHHHHhCcHHHHHhCccccCceeCCCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCcc
Confidence 2346778888899999999999999999999999999999999999999999999999999999
Q ss_pred CCcCHHHHHHHHHHHHhc---CCCEEEEEccCCCccccCCEEEEEeCC--------------------------------
Q 037346 511 SPVDDHTGAHLFKFCWVS---SSKTVIYATHQVEFLPAADLILVIKDG-------------------------------- 555 (1156)
Q Consensus 511 s~lD~~~~~~i~~~~~~~---~~~tvi~vtH~~~~~~~~d~i~~l~~G-------------------------------- 555 (1156)
|+||+.+++.+.+.+... +|+|+|+|||+++.+..||+|++|++|
T Consensus 608 SaLD~~se~~i~~~L~~~~~~~g~TvIiIsHrls~i~~aD~Iivl~~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 687 (1466)
T PTZ00265 608 SSLDNKSEYLVQKTINNLKGNENRITIIIAHRLSTIRYANTIFVLSNRERGSTVDVDIIGEDPTKDNKENNNKNNKDDNN 687 (1466)
T ss_pred cccCHHHHHHHHHHHHHHhhcCCCEEEEEeCCHHHHHhCCEEEEEeCCcccccccccccccccccccccccccccccccc
Confidence 999999999988776542 489999999999999899999999986
Q ss_pred ---------------eEEEccChHHHHh-cCcchHHHHHhhhhhccCCC-C-CCCCCcccccccccCCCCC---CCcccc
Q 037346 556 ---------------KITQAGKYSDILN-SGTDFMELVGAHKQALSGLD-S-IDRGPVSERKSINKENDGT---STTNEI 614 (1156)
Q Consensus 556 ---------------~i~~~g~~~~l~~-~~~~~~~~~~~~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~---~~~~~~ 614 (1156)
+|+|+|+|+|+++ ..+.|..++..+........ . .+................. ......
T Consensus 688 ~~~~~~~~~~~~~g~~ive~Gth~~L~~~~~g~y~~l~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 767 (1466)
T PTZ00265 688 NNNNNNNNKINNAGSYIIEQGTHDALMKNKNGIYYTMINNQKVSSKKSSNNDNDKDSDMKSSAYKDSERGYDPDEMNGNS 767 (1466)
T ss_pred ccccccccccccCCceeEeeCCHHHHHhccCCcHHHHHhhhccccccccccccccccccccccccccccccccccccccc
Confidence 5999999999997 57889888866533211100 0 0000000000000000000 000000
Q ss_pred hhcccc-c--C-CCC--cc-cccCccCcchhHHH----HhcCcccHHHHHHHHHHhccchHHHHHHHHHHHHHHHHhhhh
Q 037346 615 VNKEEN-K--N-FQS--DD-EAALPKGQLVQEEE----REKGKVGFSVYWKYMTTAYGGVLVPFILLAQIIFQIFQIGSN 683 (1156)
Q Consensus 615 ~~~~~~-~--~-~~~--~~-~~~~~~~~~~~~e~----~~~g~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 683 (1156)
...... . . ... +. ............++ .......+..+++++.......+ +.+++.++..++....+
T Consensus 768 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~ 845 (1466)
T PTZ00265 768 KHENESASNKKSCKMSDENASENNAGGKLPFLRNLFKRKPKAPNNLRIVYREIFSYKKDVT--IIALSILVAGGLYPVFA 845 (1466)
T ss_pred cccccccccccccccccccccchhccccchhhhhccccccccchhHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHH
Confidence 000000 0 0 000 00 00000000000000 00011112223333332221111 11112222222222233
Q ss_pred hhhhhcccccccc---CCCCCch-h-hHHH------------HH--HHHHHHHHHHHHHHHHHhcccccccccc--cccc
Q 037346 684 YWMAWATPVAKDV---NPAVGAS-T-LIIV------------YV--GAGYKTATQLFNKMHVCIFRAPMYFFDS--TPSG 742 (1156)
Q Consensus 684 ~~l~~~~~~~~~~---~~~~~~~-~-~~~~------------~~--~~~~~~~~~l~~~l~~~ll~~p~~ff~~--~~~G 742 (1156)
+.++.+.+..... ......+ . ++++ |+ ..+.++..++|.++|++++++|++||++ +++|
T Consensus 846 ~~~~~~i~~~~~~~~~~~~~~~~~l~~~~~~i~~~~~~~l~~~~~~~~~~~~~~~lR~~lf~~ll~~~~~~fd~~~~~~G 925 (1466)
T PTZ00265 846 LLYAKYVSTLFDFANLEANSNKYSLYILVIAIAMFISETLKNYYNNVIGEKVEKTMKRRLFENILYQEISFFDQDKHAPG 925 (1466)
T ss_pred HHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHhCCCCCCHH
Confidence 3322221100000 0000000 0 0000 00 1567889999999999999999999986 8899
Q ss_pred chhhhhcccccccchhhhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHH
Q 037346 743 RILNRVSENVKWADQSAADMDIPYDIGAFAFSMIQLLGIIVVMSLVAWQVLIVFVPVIATFIWYQQYYITS--TRELSRL 820 (1156)
Q Consensus 743 ~il~R~s~d~~~~d~~~~d~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~~~--~~~~~~~ 820 (1156)
++++|++ .|+..+...+...+..++..++.+++.++++++++|.++++++|++++.........+. .++.++.
T Consensus 926 ~l~srl~-----~Dv~~l~~~~~~~l~~~~~~i~~~i~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1000 (1466)
T PTZ00265 926 LLSAHIN-----RDVHLLKTGLVNNIVIFTHFIVLFLVSMVMSFYFCPIVAAVLTGTYFIFMRVFAIRARLTANKDVEKK 1000 (1466)
T ss_pred HHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 9999999 78878877777778888888888888889999999998877666544433222111111 1111111
Q ss_pred -------------HhHhhChHHHHHHhhccchhhhhhcchHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Q 037346 821 -------------IGVCKAPVIQQFSETISGSTTIRSLDQELRFRDTNMKLIDEYSRPKFHIAGAMEWLRFCIDMLSSIT 887 (1156)
Q Consensus 821 -------------~~~~~s~~~~~~~e~l~Gi~tIra~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 887 (1156)
..+..+...+.++|++.|+++||+|+.|+++.++|.+..+...+..........++......+..+.
T Consensus 1001 ~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~tVka~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1080 (1466)
T PTZ00265 1001 EINQPGTVFAYNSDDEIFKDPSFLIQEAFYNMNTVIIYGLEDYFCNLIEKAIDYSNKGQKRKTLVNSMLWGFSQSAQLFI 1080 (1466)
T ss_pred hccccccccchhhhHHHHHHHHHHHHHHHhcHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1223455788999999999999999999999999999988777665544333222222222111111
Q ss_pred HHHHHH----------------------HHH--HcCCCccchHHHHHHHhHHHHHHHHhhcCCCCCcccccCCCC-CCCC
Q 037346 888 FAFSLA----------------------FLI--SVPNGIIHPYKNLERKIISVERILQCACIPSEPALVIEATKP-NNSR 942 (1156)
Q Consensus 888 ~~~~~~----------------------~~~--~~~~~~~~~~~~~~~~~~s~~Ri~~~~~~~~e~~~~~~~~~~-~~~~ 942 (1156)
.++++. +++ ...........++..+..+.+|+.++++.+++.+........ ....
T Consensus 1081 ~~~~~~~G~~lv~~g~it~g~l~~~~~~~~~~~~~~~~l~~~~~~~~~a~~a~~ri~~ll~~~~~~~~~~~~~~~~~~~~ 1160 (1466)
T PTZ00265 1081 NSFAYWFGSFLIRRGTILVDDFMKSLFTFLFTGSYAGKLMSLKGDSENAKLSFEKYYPLIIRKSNIDVRDNGGIRIKNKN 1160 (1466)
T ss_pred HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCcCCCCCCcccccccCC
Confidence 000000 000 001112223367788899999999998876543211011000 0011
Q ss_pred CCCCeEEEEEEEEEEcC--CCC--------------ceeeCCCCCCHHHHHHHHhhcccC--------------------
Q 037346 943 PSHGEVNIRHLQVRYAP--NLP--------------LVLRGRTGSGKSTLIQTLFRIVES-------------------- 986 (1156)
Q Consensus 943 p~~g~I~~~~Vsf~Y~~--~~~--------------~vL~G~SGsGKSTL~~lL~rl~~p-------------------- 986 (1156)
+..|.|+|+||+|+|+. +.+ ++|+|+||||||||+++|+|||+|
T Consensus 1161 ~~~g~I~f~nVsF~Y~~~~~~~vL~~lsl~i~~G~~vAIVG~SGsGKSTl~~LL~r~ydp~~~~~~~~~~~~~~~~~~~~ 1240 (1466)
T PTZ00265 1161 DIKGKIEIMDVNFRYISRPNVPIYKDLTFSCDSKKTTAIVGETGSGKSTVMSLLMRFYDLKNDHHIVFKNEHTNDMTNEQ 1240 (1466)
T ss_pred CCCceEEEEEEEEECCCCCCCccccCeeEEEcCCCEEEEECCCCCCHHHHHHHHHHhCCCcccccccccccccccccccc
Confidence 23578999999999962 222 457799999999999999999999
Q ss_pred ----------------------------------CCceEEEcCeeCCCCChHHHhhcCeeeccccccccccchhccCCCC
Q 037346 987 ----------------------------------TAGHILIDGKDISLIGLHDLRTRLSIIPQDPTMFEGTTRSNLDPLE 1032 (1156)
Q Consensus 987 ----------------------------------~~G~I~idG~di~~i~~~~LR~~i~~VpQdp~LF~gTIr~Nl~~~~ 1032 (1156)
++|+|+|||+||+++++++||++||||||||+||+|||||||.++.
T Consensus 1241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~I~idG~di~~~~~~~lR~~i~~V~Qep~LF~gTIreNI~~g~ 1320 (1466)
T PTZ00265 1241 DYQGDEEQNVGMKNVNEFSLTKEGGSGEDSTVFKNSGKILLDGVDICDYNLKDLRNLFSIVSQEPMLFNMSIYENIKFGK 1320 (1466)
T ss_pred ccccccccccccccccccccccccccccccccCCCCCeEEECCEEHHhCCHHHHHhhccEeCCCCccccccHHHHHhcCC
Confidence 6999999999999999999999999999999999999999999985
Q ss_pred -CCCHHHHHHHHHHcCCChHHHhhcCCcccc------------------ccccccCCCEEEEecCCcCCCHHHHHHHHHH
Q 037346 1033 -EHADEQIWEALDKCQLGDEVRKKKGKLDSQ------------------GRVLLKKSKVLVLDEATASVDTATDNQIQQT 1093 (1156)
Q Consensus 1033 -~~~deei~~al~~~~l~~~i~~lp~gl~s~------------------ARALLr~~~ILiLDEaTS~LD~~te~~I~~~ 1093 (1156)
+++|+||++|++.|++++||.++|+||||. ||||+|+|+|||||||||+||++||+.|+++
T Consensus 1321 ~~at~eeI~~A~k~A~l~~fI~~LP~GydT~VGe~G~~LSGGQkQRIaIARALlr~p~ILLLDEaTSaLD~~sE~~I~~~ 1400 (1466)
T PTZ00265 1321 EDATREDVKRACKFAAIDEFIESLPNKYDTNVGPYGKSLSGGQKQRIAIARALLREPKILLLDEATSSLDSNSEKLIEKT 1400 (1466)
T ss_pred CCCCHHHHHHHHHHcCCHHHHHhCccccCCccCCCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCcccccCHHHHHHHHHH
Confidence 478999999999999999999999999975 8999999999999999999999999999999
Q ss_pred HHHhc--CCceEEEeecCcccccccCEEEEEeC----cEEe-eecChhHHhcCCCChHHHHHHHH
Q 037346 1094 LRQHF--SDCTVVTIAHRITSVLDSAMVLLLNH----GLIK-EYDSPTKLLENKSSSFAQLVAEY 1151 (1156)
Q Consensus 1094 l~~~~--~~~TvI~IaHrl~ti~~~D~I~Vl~~----G~Iv-E~G~~~eLl~~~~g~f~~l~~~~ 1151 (1156)
|++.. +++|+|+||||++++++||+|+||++ |+++ |.|+|+||+++++|.|++||+.+
T Consensus 1401 L~~~~~~~~~TvIiIaHRlsti~~aD~Ivvl~~~~~~G~iv~e~Gth~eLl~~~~g~Y~~l~~~~ 1465 (1466)
T PTZ00265 1401 IVDIKDKADKTIITIAHRIASIKRSDKIVVFNNPDRTGSFVQAHGTHEELLSVQDGVYKKYVKLA 1465 (1466)
T ss_pred HHHHhccCCCEEEEEechHHHHHhCCEEEEEeCCCCCCCEEEEecCHHHHHhcCCChHHHHHhhc
Confidence 99884 69999999999999999999999999 9955 99999999975589999999865
|
|
| >KOG0058 consensus Peptide exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.3e-78 Score=700.29 Aligned_cols=434 Identities=24% Similarity=0.358 Sum_probs=374.7
Q ss_pred HHHHHHHHHHHHHHHHhccccccccccccccchhhhhcccccccchhhhcccchHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 037346 712 AGYKTATQLFNKMHVCIFRAPMYFFDSTPSGRILNRVSENVKWADQSAADMDIPYDIGAFAFSMIQLLGIIVVMSLVAWQ 791 (1156)
Q Consensus 712 ~~~~~~~~l~~~l~~~ll~~p~~ff~~~~~G~il~R~s~d~~~~d~~~~d~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 791 (1156)
.+.++..++|..+|++++++.+.|||.+.+|+|++|++ .|...+...++..+...+-+++..++.+++|+..+|.
T Consensus 215 a~~rv~~rlR~~lF~sil~QdiaFFD~nktGeL~SRLt-----sD~~~vs~svs~nls~~lR~~~~~~g~~~~M~~~S~~ 289 (716)
T KOG0058|consen 215 AGERVVARLRTDLFRSLLRQDIAFFDENKTGELISRLT-----SDTQIVSNSVSQNLSDGLRNLVQGFGGLGFMFSLSWR 289 (716)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhhhhccCCccHHHhhhh-----hhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhhhhHH
Confidence 67799999999999999999999999999999999999 8999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhChHHHHHHhhccchhhhhhcchHHHHHHHHHHHHHHHhhHHHHHHH
Q 037346 792 VLIVFVPVIATFIWYQQYYITSTRELSRLIGVCKAPVIQQFSETISGSTTIRSLDQELRFRDTNMKLIDEYSRPKFHIAG 871 (1156)
Q Consensus 792 l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~e~l~Gi~tIra~~~e~~~~~~~~~~~~~~~~~~~~~~~ 871 (1156)
+.++.+..+++...+.++|.+..|++.+..+++-+...+...|.+.+++|||+|+.|+...++|.+.+++-.+...+...
T Consensus 290 Ltlv~~i~~P~v~~~~~~yG~~~rklS~~~Q~a~A~a~~vaeE~ls~~rTVRsfa~E~~E~~ry~~~l~~~~~i~~k~a~ 369 (716)
T KOG0058|consen 290 LTLVTLIVVPIVALVAKIYGKYLRKLSKQTQDALARANQVAEEVLSAMRTVRSFAAEEQEVKRYNKKLREVLKLSKKEAV 369 (716)
T ss_pred HHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHhhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99988888888888888899999999999999999999999999999999999999999999999988887766554443
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH-------------------HH-----HcCCCccchHHHHHHHhHHHHHHHHhhcCCC
Q 037346 872 AMEWLRFCIDMLSSITFAFSLAF-------------------LI-----SVPNGIIHPYKNLERKIISVERILQCACIPS 927 (1156)
Q Consensus 872 ~~~~~~~~l~~~~~~~~~~~~~~-------------------~~-----~~~~~~~~~~~~~~~~~~s~~Ri~~~~~~~~ 927 (1156)
....+.....+.+......++.+ ++ ....+....+.++.+...+.+|++|+++.++
T Consensus 370 a~~~f~~~~~~~~~~~~~siL~~Gg~Lv~~g~mt~g~L~sFllY~~~~g~sl~~ls~~ys~lmkgvGAs~rvFel~dr~P 449 (716)
T KOG0058|consen 370 AYGIFFGSTNLLGNLAVLSILFYGGHLVLTGSLTSGALSSFLLYQVQLGSSLSGLSSFYSELMKGVGASERVFELMDRKP 449 (716)
T ss_pred HhhHhHhHHHHHHhHHHHHHHHhccchhhcCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHhccCC
Confidence 33333322222222221111111 00 0011122234788889999999999999766
Q ss_pred CCcccccCCCCCCCCCCCCeEEEEEEEEEEc----------------CCCCceeeCCCCCCHHHHHHHHhhcccCCCceE
Q 037346 928 EPALVIEATKPNNSRPSHGEVNIRHLQVRYA----------------PNLPLVLRGRTGSGKSTLIQTLFRIVESTAGHI 991 (1156)
Q Consensus 928 e~~~~~~~~~~~~~~p~~g~I~~~~Vsf~Y~----------------~~~~~vL~G~SGsGKSTL~~lL~rl~~p~~G~I 991 (1156)
.-+.. ....| . ...|.|+|+||+|+|+ ||+.++|+|||||||||++++|.|||+|++|+|
T Consensus 450 ~i~~~--G~~~p-~-~~~G~IeF~~VsFaYP~Rp~~~Vlk~lsfti~pGe~vALVGPSGsGKSTiasLL~rfY~PtsG~I 525 (716)
T KOG0058|consen 450 RIPLT--GTLAP-D-HLQGVIEFEDVSFAYPTRPDVPVLKNLSFTIRPGEVVALVGPSGSGKSTIASLLLRFYDPTSGRI 525 (716)
T ss_pred CCCCC--Ccccc-c-cccceEEEEEeeeecCCCCCchhhcCceeeeCCCCEEEEECCCCCCHHHHHHHHHHhcCCCCCeE
Confidence 54332 11111 1 3579999999999995 445568899999999999999999999999999
Q ss_pred EEcCeeCCCCChHHHhhcCeeeccccccccccchhccCCCC-CCCHHHHHHHHHHcCCChHHHhhcCCcccc--------
Q 037346 992 LIDGKDISLIGLHDLRTRLSIIPQDPTMFEGTTRSNLDPLE-EHADEQIWEALDKCQLGDEVRKKKGKLDSQ-------- 1062 (1156)
Q Consensus 992 ~idG~di~~i~~~~LR~~i~~VpQdp~LF~gTIr~Nl~~~~-~~~deei~~al~~~~l~~~i~~lp~gl~s~-------- 1062 (1156)
++||+||++++.+.||++||+|.|||+||+|||+|||.++. ..+||||.+|+++|+.|+||.++|+||||.
T Consensus 526 llDG~~i~~~~~~~lr~~Ig~V~QEPvLFs~sI~eNI~YG~~~~t~e~i~~AAk~ANah~FI~~~p~gY~T~VGEkG~qL 605 (716)
T KOG0058|consen 526 LLDGVPISDINHKYLRRKIGLVGQEPVLFSGSIRENIAYGLDNATDEEIEAAAKMANAHEFITNFPDGYNTVVGEKGSQL 605 (716)
T ss_pred EECCeehhhcCHHHHHHHeeeeeccceeecccHHHHHhcCCCCCCHHHHHHHHHHhChHHHHHhCccccccccCCccccc
Confidence 99999999999999999999999999999999999999875 467999999999999999999999999986
Q ss_pred ----------ccccccCCCEEEEecCCcCCCHHHHHHHHHHHHHhcCCceEEEeecCcccccccCEEEEEeCcEEeeecC
Q 037346 1063 ----------GRVLLKKSKVLVLDEATASVDTATDNQIQQTLRQHFSDCTVVTIAHRITSVLDSAMVLLLNHGLIKEYDS 1132 (1156)
Q Consensus 1063 ----------ARALLr~~~ILiLDEaTS~LD~~te~~I~~~l~~~~~~~TvI~IaHrl~ti~~~D~I~Vl~~G~IvE~G~ 1132 (1156)
||||+|||+|||||||||+||.++|..||++|.+..+++|||+|||||+||++||+|+|+|+|+|+|.|+
T Consensus 606 SGGQKQRIAIARALlr~P~VLILDEATSALDaeSE~lVq~aL~~~~~~rTVlvIAHRLSTV~~Ad~Ivvi~~G~V~E~G~ 685 (716)
T KOG0058|consen 606 SGGQKQRIAIARALLRNPRVLILDEATSALDAESEYLVQEALDRLMQGRTVLVIAHRLSTVRHADQIVVIDKGRVVEMGT 685 (716)
T ss_pred cchHHHHHHHHHHHhcCCCEEEEechhhhcchhhHHHHHHHHHHhhcCCeEEEEehhhhHhhhccEEEEEcCCeEEeccc
Confidence 8999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhHHhcCCCChHHHHHHHHhcc
Q 037346 1133 PTKLLENKSSSFAQLVAEYTSS 1154 (1156)
Q Consensus 1133 ~~eLl~~~~g~f~~l~~~~~~~ 1154 (1156)
|+||+++++|.|++|++++...
T Consensus 686 h~eLl~~~~gly~~Lv~~q~~~ 707 (716)
T KOG0058|consen 686 HDELLSKPNGLYAKLVQRQLDS 707 (716)
T ss_pred HHHHhhCcccHHHHHHHHhccc
Confidence 9999999889999999987643
|
|
| >KOG0058 consensus Peptide exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.9e-76 Score=683.25 Aligned_cols=508 Identities=25% Similarity=0.306 Sum_probs=411.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CCccc---chhhHH-------HHHHHHHHHHHHHHHH
Q 037346 72 AKVLFFSAWQEILFIAILALLYTLATYVGPYLIDNFVQYLNG-RQAFE---YEGYVL-------CLSERHWFFQVQQFGI 140 (1156)
Q Consensus 72 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~p~ll~~~i~~~~~-~~~~~---~~g~~l-------~~~~~~~~~~~~~~~~ 140 (1156)
++.+.+..|+.+..+.++.++.++.....|+++++++|.+.. .+... ....++ +++.....+.....+.
T Consensus 138 l~~l~~~~~~~l~~a~~~l~vss~~~~~iP~~~G~~id~~~~~~~~~~~~~~~~~~l~~l~~~~a~~~~~r~~~~~~a~~ 217 (716)
T KOG0058|consen 138 LLGLLKPEWKWLVAAFVLLLVSSLINMFIPYYLGKLIDTISEGDDSADALKRACTILLGLFLIGALANAIRGGLLQYAGE 217 (716)
T ss_pred HHHHhchhHHHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345667788899999999999999999999999999998865 22211 111111 3333333334455667
Q ss_pred HHHHHHHHHHHHHHhcCCccccCCCCHHHHHHHHHHHHHH---------------------HHH-HHHHHHHHHHHHHHH
Q 037346 141 RFRATLFAMIYNKGLTLSGQAKQGNTSGEIINLIAVDAER---------------------ALL-ILYKKLGLASIATLL 198 (1156)
Q Consensus 141 ~~r~~l~~~i~~k~l~l~~~~~~~~~~g~i~nl~s~D~~~---------------------~~~-ll~~~lg~~~l~~~~ 198 (1156)
++-..++..+|+++++.....+|++.+|+++++++.|++. ++. |++..+-++ ++.++
T Consensus 218 rv~~rlR~~lF~sil~QdiaFFD~nktGeL~SRLtsD~~~vs~svs~nls~~lR~~~~~~g~~~~M~~~S~~Lt-lv~~i 296 (716)
T KOG0058|consen 218 RVVARLRTDLFRSLLRQDIAFFDENKTGELISRLTSDTQIVSNSVSQNLSDGLRNLVQGFGGLGFMFSLSWRLT-LVTLI 296 (716)
T ss_pred HHHHHHHHHHHHHHHhhhhhhhccCCccHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhhhhHHHH-HHHHH
Confidence 7777778888888889888999999999999999999987 111 111111111 22333
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH-----HHHHHHHHHHHHHHHHH-HHH
Q 037346 199 ATAIVMLANFPLGRLREKFQDKFMETKDRRIKATSEILRNMRILKLQGWELKKN-----ETAWLKKSVYTEAMISF-FCW 272 (1156)
Q Consensus 199 ~~~~~~~~~~~~~~~~~~~~~~~~~~~d~r~~~~~e~l~~i~~IK~~~~e~r~~-----e~~~~~~~~~~~~~~~~-~~~ 272 (1156)
.+.+++.+...+++..++..++.+.+..+..+..+|.+++|||||+|+.|.++. +++...+.....++... +++
T Consensus 297 ~~P~v~~~~~~yG~~~rklS~~~Q~a~A~a~~vaeE~ls~~rTVRsfa~E~~E~~ry~~~l~~~~~i~~k~a~a~~~f~~ 376 (716)
T KOG0058|consen 297 VVPIVALVAKIYGKYLRKLSKQTQDALARANQVAEEVLSAMRTVRSFAAEEQEVKRYNKKLREVLKLSKKEAVAYGIFFG 376 (716)
T ss_pred HhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhHhHh
Confidence 444455566677888888888888888888999999999999999999993322 22222222222222111 111
Q ss_pred -----HHHHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCccccc
Q 037346 273 -----GAPTFVSVVTFGSCILLGIPLESGMILSALTTFKILQEPIYYLPESISMMIQAKVPLDRIASFLCLEGLQTDVLE 347 (1156)
Q Consensus 273 -----~~~~~~~~~~f~~~~~~~~~lt~~~~ft~l~~~~~l~~pl~~l~~~~~~~~~a~~s~~Ri~~fl~~~~~~~~~~~ 347 (1156)
.....++++++|.+++.++.+|+|.+.+++.|-..+..++..+...++.++++..|.+|++++++.++.-+....
T Consensus 377 ~~~~~~~~~~~siL~~Gg~Lv~~g~mt~g~L~sFllY~~~~g~sl~~ls~~ys~lmkgvGAs~rvFel~dr~P~i~~~G~ 456 (716)
T KOG0058|consen 377 STNLLGNLAVLSILFYGGHLVLTGSLTSGALSSFLLYQVQLGSSLSGLSSFYSELMKGVGASERVFELMDRKPRIPLTGT 456 (716)
T ss_pred HHHHHHhHHHHHHHHhccchhhcCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHhccCCCCCCCCc
Confidence 123456778899999999999999999999999999999999999999999999999999999998654332222
Q ss_pred cCCCCCCCccEEEeeeEEEeCCCCCCCccccceEEeeCCeEEEEEcCCCCChHHHHHHHhCCCCCCCcEEEEcC------
Q 037346 348 KMPRGNSDTAIEIIDGSFSWDFSSPNPTLRNINLKVFHGMRVAVCGTVGSGKSSCLSCILGGVPKESGIIRLCG------ 421 (1156)
Q Consensus 348 ~~~~~~~~~~i~~~~~~f~~~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKSTll~~i~g~~~~~~G~i~~~g------ 421 (1156)
..|. ...+.|+|+||+|+||.+++.++|+|+||+|+|||.||+||||||||||+.++|+++|+|++|+|.+||
T Consensus 457 ~~p~-~~~G~IeF~~VsFaYP~Rp~~~Vlk~lsfti~pGe~vALVGPSGsGKSTiasLL~rfY~PtsG~IllDG~~i~~~ 535 (716)
T KOG0058|consen 457 LAPD-HLQGVIEFEDVSFAYPTRPDVPVLKNLSFTIRPGEVVALVGPSGSGKSTIASLLLRFYDPTSGRILLDGVPISDI 535 (716)
T ss_pred cccc-cccceEEEEEeeeecCCCCCchhhcCceeeeCCCCEEEEECCCCCCHHHHHHHHHHhcCCCCCeEEECCeehhhc
Confidence 2332 456789999999999999999999999999999999999999999999999999999999999999999
Q ss_pred -------eEEEEecCCcCCCccHHHHhhcCCC-CCHHHHHHHHHHhCCchhhhhCCCCCccccccCCCCCCHHHHHHHHH
Q 037346 422 -------TKAYVAQSPWIQSGKIEENILFGKE-MDRERYERVLEACSLKKDLEVLPFGDQTIIGERGINLSGGQKQRIQI 493 (1156)
Q Consensus 422 -------~~~~v~Q~~~~~~~ti~eni~~~~~-~~~~~~~~~~~~~~l~~~~~~~~~g~~t~v~~~g~~LSgGqkqRi~l 493 (1156)
+||+|.|||.+|++||+|||.+|.+ .++++++++.+.+.-++++..+|+|++|.|||+|.+|||||||||||
T Consensus 536 ~~~~lr~~Ig~V~QEPvLFs~sI~eNI~YG~~~~t~e~i~~AAk~ANah~FI~~~p~gY~T~VGEkG~qLSGGQKQRIAI 615 (716)
T KOG0058|consen 536 NHKYLRRKIGLVGQEPVLFSGSIRENIAYGLDNATDEEIEAAAKMANAHEFITNFPDGYNTVVGEKGSQLSGGQKQRIAI 615 (716)
T ss_pred CHHHHHHHeeeeeccceeecccHHHHHhcCCCCCCHHHHHHHHHHhChHHHHHhCccccccccCCccccccchHHHHHHH
Confidence 3799999999999999999999976 57889999999999999999999999999999999999999999999
Q ss_pred HHhhccCCCeeeeeCCCCCcCHHHHHHHHHHHHh-cCCCEEEEEccCCCccccCCEEEEEeCCeEEEccChHHHHhcC-c
Q 037346 494 ARPLYQDADIFLLDDPFSPVDDHTGAHLFKFCWV-SSSKTVIYATHQVEFLPAADLILVIKDGKITQAGKYSDILNSG-T 571 (1156)
Q Consensus 494 Aral~~~~~illlDep~s~lD~~~~~~i~~~~~~-~~~~tvi~vtH~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~~-~ 571 (1156)
||||++||.||||||+|||||++++..+-+.+-. .+++|||+|+||+++++.||+|+++++|+++|.|+|+|+++.. +
T Consensus 616 ARALlr~P~VLILDEATSALDaeSE~lVq~aL~~~~~~rTVlvIAHRLSTV~~Ad~Ivvi~~G~V~E~G~h~eLl~~~~g 695 (716)
T KOG0058|consen 616 ARALLRNPRVLILDEATSALDAESEYLVQEALDRLMQGRTVLVIAHRLSTVRHADQIVVIDKGRVVEMGTHDELLSKPNG 695 (716)
T ss_pred HHHHhcCCCEEEEechhhhcchhhHHHHHHHHHHhhcCCeEEEEehhhhHhhhccEEEEEcCCeEEecccHHHHhhCccc
Confidence 9999999999999999999999998766555433 6789999999999999999999999999999999999999876 6
Q ss_pred chHHHHHhhh
Q 037346 572 DFMELVGAHK 581 (1156)
Q Consensus 572 ~~~~~~~~~~ 581 (1156)
.|.++++.+.
T Consensus 696 ly~~Lv~~q~ 705 (716)
T KOG0058|consen 696 LYAKLVQRQL 705 (716)
T ss_pred HHHHHHHHhc
Confidence 7888887654
|
|
| >COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-69 Score=658.98 Aligned_cols=527 Identities=24% Similarity=0.305 Sum_probs=425.8
Q ss_pred HHHHHHHHHHh-----hc-----ccccCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccc
Q 037346 49 SPVLQNKLEAV-----VG-----VANRLTALRLAKVLFFSAWQEILFIAILALLYTLATYVGPYLIDNFVQYLNGRQAFE 118 (1156)
Q Consensus 49 ~~~~~~~~~~~-----~~-----~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~p~ll~~~i~~~~~~~~~~ 118 (1156)
.++|++.|... .. ...++...+.++..++.+++.+.-.++..++..++.++.|++.+.++|.+....+..
T Consensus 112 ~~e~~~~~tg~~l~l~~~~~~~~~~~~~~~~~~f~~~~~~~~~~l~~v~~~sl~l~i~~l~~p~~~q~viD~Vl~~~~~~ 191 (709)
T COG2274 112 LEEFEKLWTGIALLLAPTASRKFKDIPPFGLSWFIPLLFKYRRLLFEVLLASLLLQLLALATPLFSQIVIDKVLPDASRS 191 (709)
T ss_pred HHHHHHhhheeEEEEecccccccccccccchHhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCchh
Confidence 46888889721 00 011222456677778888999999999999999999999999999999887544322
Q ss_pred c-----hhhHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccccCCCCHHHHHHHHHHHHHH--------
Q 037346 119 Y-----EGYVL-----CLSERHWFFQVQQFGIRFRATLFAMIYNKGLTLSGQAKQGNTSGEIINLIAVDAER-------- 180 (1156)
Q Consensus 119 ~-----~g~~l-----~~~~~~~~~~~~~~~~~~r~~l~~~i~~k~l~l~~~~~~~~~~g~i~nl~s~D~~~-------- 180 (1156)
. .|+++ .+....-.+....++.|+...+...+|+|++++|..+++++++|++++++. |.+.
T Consensus 192 tL~vl~ig~~~~~l~~~~l~~lr~~~~~~~~~rld~~l~~~~~~hll~Lpl~~f~~r~~Ge~~sR~~-el~~Ir~flt~~ 270 (709)
T COG2274 192 TLTVLAIGLLLAALFEALLRLLRTYLIAHLGKRLDLELSGRFFRHLLRLPLSYFEKRSVGEIISRVR-ELEQIREFLTGS 270 (709)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHcCcHHHccCCChhhHHHHHH-HHHHHHHHHHHH
Confidence 1 22222 122222234456788999999999999999999999999999999999986 4444
Q ss_pred -------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Q 037346 181 -------------ALLILYKKLGLASIATLLATAIVMLANFPLGRLREKFQDKFMETKDRRIKATSEILRNMRILKLQGW 247 (1156)
Q Consensus 181 -------------~~~ll~~~lg~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~r~~~~~e~l~~i~~IK~~~~ 247 (1156)
.+.++++.-+.-++++++.+++.+.+..++.+.+++..++.+....++.+.+.|.++||++||..+.
T Consensus 271 ~l~~iiD~~~~~i~l~vm~~ys~~L~li~l~~~~l~~l~~~~~~~~l~~~~~~~~~~~a~~~s~lvE~i~gi~tvK~~~~ 350 (709)
T COG2274 271 ILTLIIDLLFALIFLAVMFLYSWKLTLIVLAAIPLNVLITLIFQPLLRRKTRKLIEESAEQQSFLVETIKGIETVKALAA 350 (709)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhhhHHHHHhhh
Confidence 1123333334445555555666666667777788888888889999999999999999999999998
Q ss_pred HH--HHHH----HHHHHH---HHHHHH----HHHHHHHHHHHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHHHHH
Q 037346 248 EL--KKNE----TAWLKK---SVYTEA----MISFFCWGAPTFVSVVTFGSCILLGIPLESGMILSALTTFKILQEPIYY 314 (1156)
Q Consensus 248 e~--r~~e----~~~~~~---~~~~~~----~~~~~~~~~~~~~~~~~f~~~~~~~~~lt~~~~ft~l~~~~~l~~pl~~ 314 (1156)
|- +.+- .+..+. ...... +..++... .-+.++|||++.+..+.+|.|.++++.++...+..|+..
T Consensus 351 e~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l--~~v~iL~~G~~lVl~~~lTlG~LiAf~~l~~~f~~pi~~ 428 (709)
T COG2274 351 EPRFRSQWDNRLAKQVNIGFKTEKLALILNTIKSLLQQL--SSVLILWFGAILVLEGELTLGQLVAFNMLAGYFISPITR 428 (709)
T ss_pred hHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhHHHH
Confidence 81 1111 111111 111111 11111111 224578999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhccCCCCccccccCCCCCCCccEEEeeeEEEeCCCCCCCccccceEEeeCCeEEEEEcC
Q 037346 315 LPESISMMIQAKVPLDRIASFLCLEGLQTDVLEKMPRGNSDTAIEIIDGSFSWDFSSPNPTLRNINLKVFHGMRVAVCGT 394 (1156)
Q Consensus 315 l~~~~~~~~~a~~s~~Ri~~fl~~~~~~~~~~~~~~~~~~~~~i~~~~~~f~~~~~~~~~~l~~i~l~i~~g~~~~ivG~ 394 (1156)
+......+.+++.+.+|+.++++.|.+.+.........+..+.|+++|++|+|+.++ .++|+|+||+|++||.+||||+
T Consensus 429 L~~~~~~~q~~~~~~~rL~dil~~~~E~~~~~~~~~~~~~~g~I~~~nvsf~y~~~~-~~vL~~isL~I~~Ge~vaIvG~ 507 (709)
T COG2274 429 LSQLWTDFQQAKVALERLGDILDTPPEQEGDKTLIHLPKLQGEIEFENVSFRYGPDD-PPVLEDLSLEIPPGEKVAIVGR 507 (709)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCcccccccccccccccCceEEEEEEEEEeCCCC-cchhhceeEEeCCCCEEEEECC
Confidence 999999999999999999999998765332211122234567899999999998643 4799999999999999999999
Q ss_pred CCCChHHHHHHHhCCCCCCCcEEEEcC-------------eEEEEecCCcCCCccHHHHhhcCCCC-CHHHHHHHHHHhC
Q 037346 395 VGSGKSSCLSCILGGVPKESGIIRLCG-------------TKAYVAQSPWIQSGKIEENILFGKEM-DRERYERVLEACS 460 (1156)
Q Consensus 395 ~GsGKSTll~~i~g~~~~~~G~i~~~g-------------~~~~v~Q~~~~~~~ti~eni~~~~~~-~~~~~~~~~~~~~ 460 (1156)
||||||||+|+|+|+|+|++|+|.+|| +++||+|++.+|+|||+|||.++.+. +.++..++++.++
T Consensus 508 SGsGKSTL~KLL~gly~p~~G~I~~dg~dl~~i~~~~lR~~ig~V~Q~~~Lf~gSI~eNi~l~~p~~~~e~i~~A~~~ag 587 (709)
T COG2274 508 SGSGKSTLLKLLLGLYKPQQGRILLDGVDLNDIDLASLRRQVGYVLQDPFLFSGSIRENIALGNPEATDEEIIEAAQLAG 587 (709)
T ss_pred CCCCHHHHHHHHhcCCCCCCceEEECCEeHHhcCHHHHHhheeEEcccchhhcCcHHHHHhcCCCCCCHHHHHHHHHHhC
Confidence 999999999999999999999999999 37999999999999999999999874 5588889999999
Q ss_pred CchhhhhCCCCCccccccCCCCCCHHHHHHHHHHHhhccCCCeeeeeCCCCCcCHHHHHHHHHHHHh-cCCCEEEEEccC
Q 037346 461 LKKDLEVLPFGDQTIIGERGINLSGGQKQRIQIARPLYQDADIFLLDDPFSPVDDHTGAHLFKFCWV-SSSKTVIYATHQ 539 (1156)
Q Consensus 461 l~~~~~~~~~g~~t~v~~~g~~LSgGqkqRi~lAral~~~~~illlDep~s~lD~~~~~~i~~~~~~-~~~~tvi~vtH~ 539 (1156)
.++++..+|.|++|.|||+|.+||||||||++|||||+++|+||||||||||||+++++.+.+.+.. ..|+|+|+||||
T Consensus 588 ~~~fI~~lP~gy~t~v~E~G~~LSGGQrQrlalARaLl~~P~ILlLDEaTSaLD~~sE~~I~~~L~~~~~~~T~I~IaHR 667 (709)
T COG2274 588 AHEFIENLPMGYDTPVGEGGANLSGGQRQRLALARALLSKPKILLLDEATSALDPETEAIILQNLLQILQGRTVIIIAHR 667 (709)
T ss_pred cHHHHHhcccccccccccCCCCCCHHHHHHHHHHHHhccCCCEEEEeCcccccCHhHHHHHHHHHHHHhcCCeEEEEEcc
Confidence 9999999999999999999999999999999999999999999999999999999999999998866 568999999999
Q ss_pred CCccccCCEEEEEeCCeEEEccChHHHHhcCcchHHHHHh
Q 037346 540 VEFLPAADLILVIKDGKITQAGKYSDILNSGTDFMELVGA 579 (1156)
Q Consensus 540 ~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~~~~~~~~~~~ 579 (1156)
++.++.||+|+||++|+|+++|+|+|+++.++.|..++..
T Consensus 668 l~ti~~adrIiVl~~Gkiv~~gs~~ell~~~g~y~~l~~~ 707 (709)
T COG2274 668 LSTIRSADRIIVLDQGKIVEQGSHEELLAQGGLYARLYQQ 707 (709)
T ss_pred chHhhhccEEEEccCCceeccCCHHHHHHhcChHHHHHhc
Confidence 9999999999999999999999999999988888877643
|
|
| >PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-69 Score=668.11 Aligned_cols=507 Identities=23% Similarity=0.252 Sum_probs=385.4
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CCccc----ch-hhHH-----HHHHHHHHHHHHH
Q 037346 69 LRLAKVLFFSAWQEILFIAILALLYTLATYVGPYLIDNFVQYLNG-RQAFE----YE-GYVL-----CLSERHWFFQVQQ 137 (1156)
Q Consensus 69 ~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~p~ll~~~i~~~~~-~~~~~----~~-g~~l-----~~~~~~~~~~~~~ 137 (1156)
.+.++.+.+.+++.+++.+++.++..++.++.|++++.++|.+.. ..... .. ++++ .++.....+...+
T Consensus 10 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (588)
T PRK11174 10 TRWLKQQSKPAKRWLNLSILLGFLSGLLLIAQAWLLATILQALIIENIPREALLPPFILLILLFVLRALLAWLRERVGFK 89 (588)
T ss_pred hHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345566778889999999999999999999999999999997642 11111 11 1111 2222233345567
Q ss_pred HHHHHHHHHHHHHHHHHhcCCccccCCCCHHHHHHHHHHHHHH--------------H-------HHHHHHHHHH-HHHH
Q 037346 138 FGIRFRATLFAMIYNKGLTLSGQAKQGNTSGEIINLIAVDAER--------------A-------LLILYKKLGL-ASIA 195 (1156)
Q Consensus 138 ~~~~~r~~l~~~i~~k~l~l~~~~~~~~~~g~i~nl~s~D~~~--------------~-------~~ll~~~lg~-~~l~ 195 (1156)
.+.++...++..+|+|.++++...+++.++|++++++++|++. + +++++ .++| .+++
T Consensus 90 ~~~~~~~~lr~~~~~~ll~~~~~~~~~~~~g~l~s~~~~dv~~i~~~~~~~~~~~~~~~~~~~~~~~~l~-~~~~~l~l~ 168 (588)
T PRK11174 90 AGQHIRQQIRQQVLDKLQQLGPAWIQGKPAGSWATLVLEQVEDMHDFYARYLPQMALAVLVPLLILIAVF-PINWAAGLI 168 (588)
T ss_pred HHHHHHHHHHHHHHHHHHhcCchhhccCCHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHH
Confidence 8889999999999999999999999999999999999999988 0 00011 1111 1111
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH-----HHHHHHH----HHHHHH
Q 037346 196 TLLATAIVMLANFPLGRLREKFQDKFMETKDRRIKATSEILRNMRILKLQGWELKKNE-----TAWLKKS----VYTEAM 266 (1156)
Q Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~r~~~~~e~l~~i~~IK~~~~e~r~~e-----~~~~~~~----~~~~~~ 266 (1156)
.++++++.+++...+.+...+..++.++..++..+.+.|.++|+++||.|++|.+..+ .+..++. ......
T Consensus 169 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~ 248 (588)
T PRK11174 169 LLGTAPLIPLFMALVGMGAADANRRNFLALARLSGHFLDRLRGLETLRLFNRGEAETESIRSASEDFRQRTMEVLRMAFL 248 (588)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1222222233344556667777788888889999999999999999999999911110 0111111 011111
Q ss_pred HHHHHHHHHH--HHHHHHHHHHHHhCCCccHH---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 037346 267 ISFFCWGAPT--FVSVVTFGSCILLGIPLESG---------MILSALTTFKILQEPIYYLPESISMMIQAKVPLDRIASF 335 (1156)
Q Consensus 267 ~~~~~~~~~~--~~~~~~f~~~~~~~~~lt~~---------~~ft~l~~~~~l~~pl~~l~~~~~~~~~a~~s~~Ri~~f 335 (1156)
...+...... .+.++.++.+.+. +.+|.| .+++++.+...+..|+..++..+..+.+++++++||.++
T Consensus 249 ~~~~~~~~~~~~~~~~~~~~~~~~~-g~~t~G~l~~~~~~~~~~~~~~l~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~ 327 (588)
T PRK11174 249 SSAVLEFFASISIALVAVYFGFSYL-GELNFGHYGTGVTLFAGFFVLILAPEFYQPLRDLGTFYHAKAQAVGAAESLVTF 327 (588)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh-cccccccccccchHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1111111111 1122233333333 334444 445555666778899999999999999999999999999
Q ss_pred hccCCCCccccccCCCCCCCccEEEeeeEEEeCCCCCCCccccceEEeeCCeEEEEEcCCCCChHHHHHHHhCCCCCCCc
Q 037346 336 LCLEGLQTDVLEKMPRGNSDTAIEIIDGSFSWDFSSPNPTLRNINLKVFHGMRVAVCGTVGSGKSSCLSCILGGVPKESG 415 (1156)
Q Consensus 336 l~~~~~~~~~~~~~~~~~~~~~i~~~~~~f~~~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKSTll~~i~g~~~~~~G 415 (1156)
++.++.+.............+.|+++|++|.|+. ++++|+|+||+|++|+++|||||||||||||+++|+|++ |++|
T Consensus 328 l~~~~~~~~~~~~~~~~~~~~~i~~~~vsf~~~~--~~~vL~~i~l~i~~G~~vaIvG~SGsGKSTL~~lL~g~~-p~~G 404 (588)
T PRK11174 328 LETPLAHPQQGEKELASNDPVTIEAEDLEILSPD--GKTLAGPLNFTLPAGQRIALVGPSGAGKTSLLNALLGFL-PYQG 404 (588)
T ss_pred HcCCCcccCCCccccCCCCCceEEEEeeEEeccC--CCeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCC-CCCc
Confidence 9876532211110111112346999999987753 457999999999999999999999999999999999999 8999
Q ss_pred EEEEcC-------------eEEEEecCCcCCCccHHHHhhcCCC-CCHHHHHHHHHHhCCchhhhhCCCCCccccccCCC
Q 037346 416 IIRLCG-------------TKAYVAQSPWIQSGKIEENILFGKE-MDRERYERVLEACSLKKDLEVLPFGDQTIIGERGI 481 (1156)
Q Consensus 416 ~i~~~g-------------~~~~v~Q~~~~~~~ti~eni~~~~~-~~~~~~~~~~~~~~l~~~~~~~~~g~~t~v~~~g~ 481 (1156)
+|.+|| +++||||+|++|++||+|||.+|++ .++++++++++.|++++++..+|+|++|.+||+|.
T Consensus 405 ~I~i~g~~i~~~~~~~lr~~i~~v~Q~~~LF~~TI~eNI~~g~~~~~~eei~~al~~a~l~~~i~~lp~G~dT~vge~G~ 484 (588)
T PRK11174 405 SLKINGIELRELDPESWRKHLSWVGQNPQLPHGTLRDNVLLGNPDASDEQLQQALENAWVSEFLPLLPQGLDTPIGDQAA 484 (588)
T ss_pred EEEECCEecccCCHHHHHhheEEecCCCcCCCcCHHHHhhcCCCCCCHHHHHHHHHHhCHHHHHHhcccccccccccCCC
Confidence 999999 4799999999999999999999964 88999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHhhccCCCeeeeeCCCCCcCHHHHHHHHHHHHh-cCCCEEEEEccCCCccccCCEEEEEeCCeEEEc
Q 037346 482 NLSGGQKQRIQIARPLYQDADIFLLDDPFSPVDDHTGAHLFKFCWV-SSSKTVIYATHQVEFLPAADLILVIKDGKITQA 560 (1156)
Q Consensus 482 ~LSgGqkqRi~lAral~~~~~illlDep~s~lD~~~~~~i~~~~~~-~~~~tvi~vtH~~~~~~~~d~i~~l~~G~i~~~ 560 (1156)
+|||||||||+||||++++|+|||||||||+||+++++++.+.+.. .+++|+|+|||+++.++.||+|++|++|+++++
T Consensus 485 ~LSGGQrQRialARAll~~~~IliLDE~TSaLD~~te~~i~~~l~~~~~~~TvIiItHrl~~i~~aD~Iivl~~G~i~e~ 564 (588)
T PRK11174 485 GLSVGQAQRLALARALLQPCQLLLLDEPTASLDAHSEQLVMQALNAASRRQTTLMVTHQLEDLAQWDQIWVMQDGQIVQQ 564 (588)
T ss_pred CCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHhCCCEEEEEecChHHHHhCCEEEEEeCCeEeec
Confidence 9999999999999999999999999999999999999999886655 478999999999999999999999999999999
Q ss_pred cChHHHHhcCcchHHHHHhh
Q 037346 561 GKYSDILNSGTDFMELVGAH 580 (1156)
Q Consensus 561 g~~~~l~~~~~~~~~~~~~~ 580 (1156)
|+|++++++++.|.+++..+
T Consensus 565 G~~~eL~~~~~~y~~l~~~q 584 (588)
T PRK11174 565 GDYAELSQAGGLFATLLAHR 584 (588)
T ss_pred CCHHHHHhcchHHHHHHHHh
Confidence 99999998888888887554
|
|
| >COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.1e-70 Score=663.67 Aligned_cols=476 Identities=24% Similarity=0.358 Sum_probs=397.2
Q ss_pred HHHHHHHHHHHHHHhhhhhhhhhccccccccCCCCCchhhH---H-HHHH--------------HHHHHHHHHHHHHHHH
Q 037346 666 PFILLAQIIFQIFQIGSNYWMAWATPVAKDVNPAVGASTLI---I-VYVG--------------AGYKTATQLFNKMHVC 727 (1156)
Q Consensus 666 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~---~-~~~~--------------~~~~~~~~l~~~l~~~ 727 (1156)
.-+++.+++.+++.++++++.++..+............... . .++. .+.+....+-.++++|
T Consensus 157 ~~v~~~sl~l~i~~l~~p~~~q~viD~Vl~~~~~~tL~vl~ig~~~~~l~~~~l~~lr~~~~~~~~~rld~~l~~~~~~h 236 (709)
T COG2274 157 FEVLLASLLLQLLALATPLFSQIVIDKVLPDASRSTLTVLAIGLLLAALFEALLRLLRTYLIAHLGKRLDLELSGRFFRH 236 (709)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 34556677788888888888876654321111111111100 0 0000 4557777788899999
Q ss_pred hccccccccccccccchhhhhcccccccchhhhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 037346 728 IFRAPMYFFDSTPSGRILNRVSENVKWADQSAADMDIPYDIGAFAFSMIQLLGIIVVMSLVAWQVLIVFVPVIATFIWYQ 807 (1156)
Q Consensus 728 ll~~p~~ff~~~~~G~il~R~s~d~~~~d~~~~d~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~ 807 (1156)
+++.|++||+++++|++++|+. |...+...+...+...+..++.+++.+++|++++|+++++.+..++++..+.
T Consensus 237 ll~Lpl~~f~~r~~Ge~~sR~~------el~~Ir~flt~~~l~~iiD~~~~~i~l~vm~~ys~~L~li~l~~~~l~~l~~ 310 (709)
T COG2274 237 LLRLPLSYFEKRSVGEIISRVR------ELEQIREFLTGSILTLIIDLLFALIFLAVMFLYSWKLTLIVLAAIPLNVLIT 310 (709)
T ss_pred HHcCcHHHccCCChhhHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999995 7888888888888888888888899999999999999998888888877777
Q ss_pred HHHHHHHHHHHHHHhHhhChHHHHHHhhccchhhhhhcchHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Q 037346 808 QYYITSTRELSRLIGVCKAPVIQQFSETISGSTTIRSLDQELRFRDTNMKLIDEYSRPKFHIAGAMEWLRFCIDMLSSIT 887 (1156)
Q Consensus 808 ~~~~~~~~~~~~~~~~~~s~~~~~~~e~l~Gi~tIra~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 887 (1156)
..+.+..++..+...+..+..+++..|++.|++|||+.+.|.++..+|++.++++.+..+.......+......++..+.
T Consensus 311 ~~~~~~l~~~~~~~~~~~a~~~s~lvE~i~gi~tvK~~~~e~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~ 390 (709)
T COG2274 311 LIFQPLLRRKTRKLIEESAEQQSFLVETIKGIETVKALAAEPRFRSQWDNRLAKQVNIGFKTEKLALILNTIKSLLQQLS 390 (709)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHHHHHhhhHHHHHhhhhHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHH
Confidence 77777777777777888888999999999999999999999999999999999999999888877777776666655444
Q ss_pred HHHHHHHH------------------------HHcCCCccchHHHHHHHhHHHHHHHHhhcCCCCCcccccCCCCCCCCC
Q 037346 888 FAFSLAFL------------------------ISVPNGIIHPYKNLERKIISVERILQCACIPSEPALVIEATKPNNSRP 943 (1156)
Q Consensus 888 ~~~~~~~~------------------------~~~~~~~~~~~~~~~~~~~s~~Ri~~~~~~~~e~~~~~~~~~~~~~~p 943 (1156)
.+.++++. ..+....++.+.+++....+.+|+.++.+.|+|.+... .+...++
T Consensus 391 ~v~iL~~G~~lVl~~~lTlG~LiAf~~l~~~f~~pi~~L~~~~~~~q~~~~~~~rL~dil~~~~E~~~~~---~~~~~~~ 467 (709)
T COG2274 391 SVLILWFGAILVLEGELTLGQLVAFNMLAGYFISPITRLSQLWTDFQQAKVALERLGDILDTPPEQEGDK---TLIHLPK 467 (709)
T ss_pred HHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccccccc---ccccccc
Confidence 33332221 11111223334788889999999999999998864321 1234456
Q ss_pred CCCeEEEEEEEEEEcCCCC---------------ceeeCCCCCCHHHHHHHHhhcccCCCceEEEcCeeCCCCChHHHhh
Q 037346 944 SHGEVNIRHLQVRYAPNLP---------------LVLRGRTGSGKSTLIQTLFRIVESTAGHILIDGKDISLIGLHDLRT 1008 (1156)
Q Consensus 944 ~~g~I~~~~Vsf~Y~~~~~---------------~vL~G~SGsGKSTL~~lL~rl~~p~~G~I~idG~di~~i~~~~LR~ 1008 (1156)
..|+|+|+||+|+|+++.| ++|+|+||||||||+|+|.|+|+|++|+|++||+|+.++++++||+
T Consensus 468 ~~g~I~~~nvsf~y~~~~~~vL~~isL~I~~Ge~vaIvG~SGsGKSTL~KLL~gly~p~~G~I~~dg~dl~~i~~~~lR~ 547 (709)
T COG2274 468 LQGEIEFENVSFRYGPDDPPVLEDLSLEIPPGEKVAIVGRSGSGKSTLLKLLLGLYKPQQGRILLDGVDLNDIDLASLRR 547 (709)
T ss_pred cCceEEEEEEEEEeCCCCcchhhceeEEeCCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEeHHhcCHHHHHh
Confidence 6899999999999987655 4567999999999999999999999999999999999999999999
Q ss_pred cCeeeccccccccccchhccCCCCCC-CHHHHHHHHHHcCCChHHHhhcCCcccc------------------ccccccC
Q 037346 1009 RLSIIPQDPTMFEGTTRSNLDPLEEH-ADEQIWEALDKCQLGDEVRKKKGKLDSQ------------------GRVLLKK 1069 (1156)
Q Consensus 1009 ~i~~VpQdp~LF~gTIr~Nl~~~~~~-~deei~~al~~~~l~~~i~~lp~gl~s~------------------ARALLr~ 1069 (1156)
+|++||||++||+|||||||+.+++. ++||+++||+.+|+|+||.++|.||+|. ||||++|
T Consensus 548 ~ig~V~Q~~~Lf~gSI~eNi~l~~p~~~~e~i~~A~~~ag~~~fI~~lP~gy~t~v~E~G~~LSGGQrQrlalARaLl~~ 627 (709)
T COG2274 548 QVGYVLQDPFLFSGSIRENIALGNPEATDEEIIEAAQLAGAHEFIENLPMGYDTPVGEGGANLSGGQRQRLALARALLSK 627 (709)
T ss_pred heeEEcccchhhcCcHHHHHhcCCCCCCHHHHHHHHHHhCcHHHHHhcccccccccccCCCCCCHHHHHHHHHHHHhccC
Confidence 99999999999999999999988764 5799999999999999999999999976 8999999
Q ss_pred CCEEEEecCCcCCCHHHHHHHHHHHHHhcCCceEEEeecCcccccccCEEEEEeCcEEeeecChhHHhcCCCChHHHHHH
Q 037346 1070 SKVLVLDEATASVDTATDNQIQQTLRQHFSDCTVVTIAHRITSVLDSAMVLLLNHGLIKEYDSPTKLLENKSSSFAQLVA 1149 (1156)
Q Consensus 1070 ~~ILiLDEaTS~LD~~te~~I~~~l~~~~~~~TvI~IaHrl~ti~~~D~I~Vl~~G~IvE~G~~~eLl~~~~g~f~~l~~ 1149 (1156)
|+||||||||||||++||+.|++.|.+..++||+|+||||++|+++||||+|||+|+|+|.|+|+||++. +|.|+++++
T Consensus 628 P~ILlLDEaTSaLD~~sE~~I~~~L~~~~~~~T~I~IaHRl~ti~~adrIiVl~~Gkiv~~gs~~ell~~-~g~y~~l~~ 706 (709)
T COG2274 628 PKILLLDEATSALDPETEAIILQNLLQILQGRTVIIIAHRLSTIRSADRIIVLDQGKIVEQGSHEELLAQ-GGLYARLYQ 706 (709)
T ss_pred CCEEEEeCcccccCHhHHHHHHHHHHHHhcCCeEEEEEccchHhhhccEEEEccCCceeccCCHHHHHHh-cChHHHHHh
Confidence 9999999999999999999999999999999999999999999999999999999999999999999986 899999998
Q ss_pred HH
Q 037346 1150 EY 1151 (1156)
Q Consensus 1150 ~~ 1151 (1156)
++
T Consensus 707 ~q 708 (709)
T COG2274 707 QQ 708 (709)
T ss_pred cc
Confidence 65
|
|
| >TIGR03797 NHPM_micro_ABC2 NHPM bacteriocin system ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.3e-67 Score=657.31 Aligned_cols=504 Identities=22% Similarity=0.268 Sum_probs=398.6
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcccc-----hhhHH-----HHHHHHHHHHHHHHH
Q 037346 70 RLAKVLFFSAWQEILFIAILALLYTLATYVGPYLIDNFVQYLNGRQAFEY-----EGYVL-----CLSERHWFFQVQQFG 139 (1156)
Q Consensus 70 ~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~p~ll~~~i~~~~~~~~~~~-----~g~~l-----~~~~~~~~~~~~~~~ 139 (1156)
++++..++.+++.++..+++.++..++.++.|++++.++|.+........ .++++ .++.....+...+++
T Consensus 125 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~p~~~~~iid~v~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 204 (686)
T TIGR03797 125 DLLRFALRGARRDLLAILAMGLLGTLLGMLVPIATGILIGTAIPDADRSLLVQIALALLAAAVGAAAFQLAQSLAVLRLE 204 (686)
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444467788889999999999999999999999999998753322111 11111 112222234456788
Q ss_pred HHHHHHHHHHHHHHHhcCCccccCCCCHHHHHHHHHHHHHH---------------------HHHHHHHHHHHHHHHHHH
Q 037346 140 IRFRATLFAMIYNKGLTLSGQAKQGNTSGEIINLIAVDAER---------------------ALLILYKKLGLASIATLL 198 (1156)
Q Consensus 140 ~~~r~~l~~~i~~k~l~l~~~~~~~~~~g~i~nl~s~D~~~---------------------~~~ll~~~lg~~~l~~~~ 198 (1156)
.++...++..+|+|.++++...+++.++|+++++++ |++. .++++++.-++.+++.++
T Consensus 205 ~~~~~~l~~~~~~~ll~~~~~~~~~~~~g~~~~r~~-~~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~li~l~ 283 (686)
T TIGR03797 205 TRMDASLQAAVWDRLLRLPVSFFRQYSTGDLASRAM-GISQIRRILSGSTLTTLLSGIFALLNLGLMFYYSWKLALVAVA 283 (686)
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHCCCChhHHHHHHh-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 899999999999999999999889999999999987 6655 011111111222223333
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH---HH------HHHHHHHHHHHHHHHH
Q 037346 199 ATAIVMLANFPLGRLREKFQDKFMETKDRRIKATSEILRNMRILKLQGWELKK---NE------TAWLKKSVYTEAMISF 269 (1156)
Q Consensus 199 ~~~~~~~~~~~~~~~~~~~~~~~~~~~d~r~~~~~e~l~~i~~IK~~~~e~r~---~e------~~~~~~~~~~~~~~~~ 269 (1156)
++++.+++...+.+...+..++.++..+++.+.+.|.++|+++||.++.|.+. -+ .+...+..........
T Consensus 284 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 363 (686)
T TIGR03797 284 LALVAIAVTLVLGLLQVRKERRLLELSGKISGLTVQLINGISKLRVAGAENRAFARWAKLFSRQRKLELSAQRIENLLTV 363 (686)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333444555666777788888888899999999999999999999988111 00 0111111111111111
Q ss_pred HHHHH--HHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCccccc
Q 037346 270 FCWGA--PTFVSVVTFGSCILLGIPLESGMILSALTTFKILQEPIYYLPESISMMIQAKVPLDRIASFLCLEGLQTDVLE 347 (1156)
Q Consensus 270 ~~~~~--~~~~~~~~f~~~~~~~~~lt~~~~ft~l~~~~~l~~pl~~l~~~~~~~~~a~~s~~Ri~~fl~~~~~~~~~~~ 347 (1156)
+.... ...+.+++++++.+..+.+|.|.++++..++..+..|+..++..+..+.+++++++|+.++++.++..+..
T Consensus 364 ~~~~i~~~~~~~il~~g~~lv~~g~ltiG~lva~~~l~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~l~~~~e~~~~-- 441 (686)
T TIGR03797 364 FNAVLPVLTSAALFAAAISLLGGAGLSLGSFLAFNTAFGSFSGAVTQLSNTLISILAVIPLWERAKPILEALPEVDEA-- 441 (686)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccC--
Confidence 11111 12233556788888889999999999999999999999999999999999999999999999875432211
Q ss_pred cCCCCCCCccEEEeeeEEEeCCCCCCCccccceEEeeCCeEEEEEcCCCCChHHHHHHHhCCCCCCCcEEEEcC------
Q 037346 348 KMPRGNSDTAIEIIDGSFSWDFSSPNPTLRNINLKVFHGMRVAVCGTVGSGKSSCLSCILGGVPKESGIIRLCG------ 421 (1156)
Q Consensus 348 ~~~~~~~~~~i~~~~~~f~~~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKSTll~~i~g~~~~~~G~i~~~g------ 421 (1156)
........+.|+++|++|+|+.. ++++|+|+||+|++||.++|+|+||||||||+++|+|+++|++|+|.+||
T Consensus 442 ~~~~~~~~~~I~~~nvsf~Y~~~-~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLlklL~gl~~p~~G~I~idg~~i~~~ 520 (686)
T TIGR03797 442 KTDPGKLSGAIEVDRVTFRYRPD-GPLILDDVSLQIEPGEFVAIVGPSGSGKSTLLRLLLGFETPESGSVFYDGQDLAGL 520 (686)
T ss_pred cCCCCCCCceEEEEEEEEEcCCC-CccceeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEEcCcC
Confidence 11111223569999999999743 46899999999999999999999999999999999999999999999998
Q ss_pred -------eEEEEecCCcCCCccHHHHhhcCCCCCHHHHHHHHHHhCCchhhhhCCCCCccccccCCCCCCHHHHHHHHHH
Q 037346 422 -------TKAYVAQSPWIQSGKIEENILFGKEMDRERYERVLEACSLKKDLEVLPFGDQTIIGERGINLSGGQKQRIQIA 494 (1156)
Q Consensus 422 -------~~~~v~Q~~~~~~~ti~eni~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~t~v~~~g~~LSgGqkqRi~lA 494 (1156)
+++||||+|++|++||+|||.++++.+++++.++++.+++++++..+|+|++|.+|++|.+||||||||++||
T Consensus 521 ~~~~lr~~i~~v~Q~~~lf~gTI~eNi~~~~~~~~e~i~~al~~a~l~~~i~~lp~G~dt~ige~G~~LSGGQrQRialA 600 (686)
T TIGR03797 521 DVQAVRRQLGVVLQNGRLMSGSIFENIAGGAPLTLDEAWEAARMAGLAEDIRAMPMGMHTVISEGGGTLSGGQRQRLLIA 600 (686)
T ss_pred CHHHHHhccEEEccCCccCcccHHHHHhcCCCCCHHHHHHHHHHcCcHHHHHhccccccccccCCCCCCCHHHHHHHHHH
Confidence 3799999999999999999999988889999999999999999999999999999999999999999999999
Q ss_pred HhhccCCCeeeeeCCCCCcCHHHHHHHHHHHHhcCCCEEEEEccCCCccccCCEEEEEeCCeEEEccChHHHHhcCcchH
Q 037346 495 RPLYQDADIFLLDDPFSPVDDHTGAHLFKFCWVSSSKTVIYATHQVEFLPAADLILVIKDGKITQAGKYSDILNSGTDFM 574 (1156)
Q Consensus 495 ral~~~~~illlDep~s~lD~~~~~~i~~~~~~~~~~tvi~vtH~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~~~~~~ 574 (1156)
||++++|+++|||||||+||+++++++.+.+... ++|+|+|||+++.++.||+|++|++|++++.|+|+++++.++.|.
T Consensus 601 RAll~~p~iLiLDEpTS~LD~~te~~i~~~L~~~-~~T~IiItHr~~~i~~~D~Iivl~~G~iv~~G~~~~Ll~~~~~y~ 679 (686)
T TIGR03797 601 RALVRKPRILLFDEATSALDNRTQAIVSESLERL-KVTRIVIAHRLSTIRNADRIYVLDAGRVVQQGTYDELMAREGLFA 679 (686)
T ss_pred HHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHh-CCeEEEEecChHHHHcCCEEEEEECCEEEEECCHHHHHhCCcHHH
Confidence 9999999999999999999999999998876544 689999999999999999999999999999999999998888888
Q ss_pred HHHH
Q 037346 575 ELVG 578 (1156)
Q Consensus 575 ~~~~ 578 (1156)
+++.
T Consensus 680 ~l~~ 683 (686)
T TIGR03797 680 QLAR 683 (686)
T ss_pred HHHH
Confidence 7764
|
Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal propeptide cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, a conserved propeptide sequence with a classic Gly-Gly motif |
| >KOG0055 consensus Multidrug/pheromone exporter, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-67 Score=643.74 Aligned_cols=503 Identities=23% Similarity=0.321 Sum_probs=391.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC-c-c-----cchhhHH--------HHHHHHHHHHHHHHH
Q 037346 75 LFFSAWQEILFIAILALLYTLATYVGPYLIDNFVQYLNGRQ-A-F-----EYEGYVL--------CLSERHWFFQVQQFG 139 (1156)
Q Consensus 75 l~~~~~~~~~~~~~~~~~~~~~~~~~p~ll~~~i~~~~~~~-~-~-----~~~g~~l--------~~~~~~~~~~~~~~~ 139 (1156)
+.+..|+.++++.+..++..+...+..+++.+++..+...+ + . .|..+++ +...++|+| ...|
T Consensus 658 ~~~pe~~~l~lG~i~a~i~G~~~P~fa~~~s~~~~~f~~~~~~~~~~~~~~~al~f~~l~~~~~i~~~~q~~~f--~~~g 735 (1228)
T KOG0055|consen 658 LNKPEWPYLLLGSLGAAIRGATYPLFAYVFSQVLEAFYPPDDDELKREVRAWALIFLGLGIVSGITNFLQHYFF--GIAG 735 (1228)
T ss_pred hccchhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHH
Confidence 44556777788888888887777777788888887665322 1 1 1111111 112223333 3445
Q ss_pred HHHHHHHHHHHHHHHhcCCccccC--CCCHHHHHHHHHHHHHH--------------HH------HHHHHHHHH-HHHHH
Q 037346 140 IRFRATLFAMIYNKGLTLSGQAKQ--GNTSGEIINLIAVDAER--------------AL------LILYKKLGL-ASIAT 196 (1156)
Q Consensus 140 ~~~r~~l~~~i~~k~l~l~~~~~~--~~~~g~i~nl~s~D~~~--------------~~------~ll~~~lg~-~~l~~ 196 (1156)
.++-..++...|+++++....++| +++ |.+.+++.+|+.. ++ ..+....|| .++++
T Consensus 736 e~Lt~R~R~~~F~~ll~qd~~wFD~~~ns-g~l~~RLa~Da~~vr~~v~~rl~~vv~~~~~~~~~iiiaf~~~W~lalv~ 814 (1228)
T KOG0055|consen 736 EKLTKRLRSMMFRALLRQEVGWFDDPENS-GALSSRLATDASNVRAAVGDRLSLVVQNIAAVIIGIIIAFIYGWRLALVV 814 (1228)
T ss_pred HHHHHHHHHHHHHHHHcCCCcccCCCccc-hHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555555666667777776665554 345 9999999999876 00 001111122 12233
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH-----HHHHHHHHHHHHHHHHHHHHHHH
Q 037346 197 LLATAIVMLANFPLGRLREKFQDKFMETKDRRIKATSEILRNMRILKLQGWE-----LKKNETAWLKKSVYTEAMISFFC 271 (1156)
Q Consensus 197 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~r~~~~~e~l~~i~~IK~~~~e-----~r~~e~~~~~~~~~~~~~~~~~~ 271 (1156)
+++.+++....+...+.+.....+..+..++..++..|++.+||||+.|+.| .-.++++..++.....++...+.
T Consensus 815 la~~Pll~~~~~~~~~~~~~~~~~~~~~~~ea~~iA~eai~NIrTV~al~~e~~~~~~y~~~l~~p~~~~~~~~~i~gl~ 894 (1228)
T KOG0055|consen 815 LATFPLLILSGYLQKKFLKGFSKDDKKAYEEASKIAIEAVSNIRTVAALCAEEKFMELYKEELEKPRKSSFKRGLISGLG 894 (1228)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444445555556677788888888888999999999999999999999999 22233333333333333222221
Q ss_pred HH------HHHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCC-CCcc
Q 037346 272 WG------APTFVSVVTFGSCILLGIPLESGMILSALTTFKILQEPIYYLPESISMMIQAKVPLDRIASFLCLEG-LQTD 344 (1156)
Q Consensus 272 ~~------~~~~~~~~~f~~~~~~~~~lt~~~~ft~l~~~~~l~~pl~~l~~~~~~~~~a~~s~~Ri~~fl~~~~-~~~~ 344 (1156)
++ ....+..++||.+++..+..++..+|.++..+.+-...+.+.....+.+.+|+.|+.+|++++++++ .+.+
T Consensus 895 f~~sqs~~~~~~A~~f~~G~~Li~~g~~~~~~~~~vf~~l~~ta~~~~~~~s~~Pd~~ka~~Aa~~iF~i~dr~~~i~~~ 974 (1228)
T KOG0055|consen 895 FGFSQSLLFFVYALSFWYGARLISNGEMTFEDVFRVFMALSFTAMALGQASSYAPDISKAKIAAGSIFEILDRKPTIDPD 974 (1228)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHhcCCcCHHHHHHHHHHHHHHHHHHHHHHhhCcHHHHHHHHHHHHHHHhcCCCCCCCC
Confidence 11 1223446778888888899999999999998888888888999999999999999999999999875 3332
Q ss_pred ccccCCCCCCCccEEEeeeEEEeCCCCCCCccccceEEeeCCeEEEEEcCCCCChHHHHHHHhCCCCCCCcEEEEcCe--
Q 037346 345 VLEKMPRGNSDTAIEIIDGSFSWDFSSPNPTLRNINLKVFHGMRVAVCGTVGSGKSSCLSCILGGVPKESGIIRLCGT-- 422 (1156)
Q Consensus 345 ~~~~~~~~~~~~~i~~~~~~f~~~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKSTll~~i~g~~~~~~G~i~~~g~-- 422 (1156)
.......++..+.|+++||+|+||++++.++|+|+||++++|+.+||||||||||||.+.+|.++|+|++|.|.+||+
T Consensus 975 ~~~~~~~~~~~G~I~~~~V~F~YPsRP~~~Il~~l~l~i~~GqTvALVG~SGsGKSTvI~LLeRfYdp~~G~V~IDg~di 1054 (1228)
T KOG0055|consen 975 STSGGKLPNVKGDIEFRNVSFAYPTRPDVPVLNNLSLSIRAGQTVALVGPSGSGKSTVISLLERFYDPDAGKVKIDGVDI 1054 (1228)
T ss_pred CCCCCccccceeEEEEeeeEeeCCCCCCchhhcCCcEEecCCCEEEEECCCCCCHHHHHHHHHHhcCCCCCeEEECCccc
Confidence 211111223457899999999999999999999999999999999999999999999999999999999999999993
Q ss_pred -----------EEEEecCCcCCCccHHHHhhcC-CCCCHHHHHHHHHHhCCchhhhhCCCCCccccccCCCCCCHHHHHH
Q 037346 423 -----------KAYVAQSPWIQSGKIEENILFG-KEMDRERYERVLEACSLKKDLEVLPFGDQTIIGERGINLSGGQKQR 490 (1156)
Q Consensus 423 -----------~~~v~Q~~~~~~~ti~eni~~~-~~~~~~~~~~~~~~~~l~~~~~~~~~g~~t~v~~~g~~LSgGqkqR 490 (1156)
+|.|+|+|.||++||||||++| ...+++++.++++.+..++++..+|+|+||.|||+|.+||||||||
T Consensus 1055 k~lnl~~LR~~i~lVsQEP~LF~~TIrENI~YG~~~vs~~eIi~Aak~ANaH~FI~sLP~GyDT~vGerG~QLSGGQKQR 1134 (1228)
T KOG0055|consen 1055 KDLNLKWLRKQIGLVSQEPVLFNGTIRENIAYGSEEVSEEEIIEAAKLANAHNFISSLPQGYDTRVGERGVQLSGGQKQR 1134 (1228)
T ss_pred ccCCHHHHHHhcceeccCchhhcccHHHHHhccCCCCCHHHHHHHHHHhhhHHHHhcCcCcccCccCcccCcCCchHHHH
Confidence 6999999999999999999999 3468899999999999999999999999999999999999999999
Q ss_pred HHHHHhhccCCCeeeeeCCCCCcCHHHHHHHHHHHHh-cCCCEEEEEccCCCccccCCEEEEEeCCeEEEccChHHHHhc
Q 037346 491 IQIARPLYQDADIFLLDDPFSPVDDHTGAHLFKFCWV-SSSKTVIYATHQVEFLPAADLILVIKDGKITQAGKYSDILNS 569 (1156)
Q Consensus 491 i~lAral~~~~~illlDep~s~lD~~~~~~i~~~~~~-~~~~tvi~vtH~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~ 569 (1156)
||||||+++||+||||||+|||||.++++-+-+.+-+ ..|+|+|+|+||++++++||.|+|++||+|+|+|+|++|++.
T Consensus 1135 IAIARAilRnPkILLLDEATSALDseSErvVQeALd~a~~gRT~IvIAHRLSTIqnaD~I~Vi~~G~VvE~GtH~~L~~~ 1214 (1228)
T KOG0055|consen 1135 IAIARAILRNPKILLLDEATSALDSESERVVQEALDRAMEGRTTIVIAHRLSTIQNADVIAVLKNGKVVEQGTHDELLAK 1214 (1228)
T ss_pred HHHHHHHHcCCCeeeeeccchhhhhhhHHHHHHHHHHhhcCCcEEEEecchhhhhcCCEEEEEECCEEEecccHHHHHhC
Confidence 9999999999999999999999999998766544433 679999999999999999999999999999999999999999
Q ss_pred CcchHHHHHhh
Q 037346 570 GTDFMELVGAH 580 (1156)
Q Consensus 570 ~~~~~~~~~~~ 580 (1156)
.+.|.++++.+
T Consensus 1215 ~G~Y~~Lv~~q 1225 (1228)
T KOG0055|consen 1215 RGIYFRLVQLQ 1225 (1228)
T ss_pred CCchHHHhhhc
Confidence 99999988654
|
|
| >TIGR00958 3a01208 Conjugate Transporter-2 (CT2) Family protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.4e-67 Score=657.51 Aligned_cols=501 Identities=23% Similarity=0.268 Sum_probs=388.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccc---c-h-hhHH-----HHHHHHHHHHHHHHHHHHH
Q 037346 74 VLFFSAWQEILFIAILALLYTLATYVGPYLIDNFVQYLNGRQAFE---Y-E-GYVL-----CLSERHWFFQVQQFGIRFR 143 (1156)
Q Consensus 74 ~l~~~~~~~~~~~~~~~~~~~~~~~~~p~ll~~~i~~~~~~~~~~---~-~-g~~l-----~~~~~~~~~~~~~~~~~~r 143 (1156)
.+++.+++.++..+++.++..++.++.|+++++++|.+....+.. . . .+++ .++.....+...+.+.++.
T Consensus 154 ~~~~~~~~~l~~~~~~~~~~~l~~~~~p~~~~~iid~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 233 (711)
T TIGR00958 154 GLSGRDWPWLISAFVFLTLSSLGEMFIPFYTGRVIDTLGGDKGPPALASAIFFMCLLSIASSVSAGLRGGSFNYTMARIN 233 (711)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345566777888889999999999999999999999886432211 1 1 1111 1111111223355667777
Q ss_pred HHHHHHHHHHHhcCCccccCCCCHHHHHHHHHHHHHH---------------------HHHHHHHHHHHHHHHHHHHHHH
Q 037346 144 ATLFAMIYNKGLTLSGQAKQGNTSGEIINLIAVDAER---------------------ALLILYKKLGLASIATLLATAI 202 (1156)
Q Consensus 144 ~~l~~~i~~k~l~l~~~~~~~~~~g~i~nl~s~D~~~---------------------~~~ll~~~lg~~~l~~~~~~~~ 202 (1156)
..++..+|++.++.+...+++.++|+++|++++|++. ++++++..-+..+++.++.+++
T Consensus 234 ~~lr~~l~~~ll~~~~~~f~~~~~G~i~srl~~Di~~i~~~~~~~~~~~l~~~~~~i~~~~~l~~~s~~l~l~~l~~~~l 313 (711)
T TIGR00958 234 LRIREDLFRSLLRQDLGFFDENKTGELTSRLSSDTQTMSRSLSLNVNVLLRNLVMLLGLLGFMLWLSPRLTMVTLINLPL 313 (711)
T ss_pred HHHHHHHHHHHHcCCHHHHcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 8888999999999999888999999999999999987 0001111101111111222223
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH-----HHHHH----HHHHHHHHHHHHHH-
Q 037346 203 VMLANFPLGRLREKFQDKFMETKDRRIKATSEILRNMRILKLQGWELKKNE-----TAWLK----KSVYTEAMISFFCW- 272 (1156)
Q Consensus 203 ~~~~~~~~~~~~~~~~~~~~~~~d~r~~~~~e~l~~i~~IK~~~~e~r~~e-----~~~~~----~~~~~~~~~~~~~~- 272 (1156)
.+.+...+.+...+..++.++..++..+.+.|.++|+++||.|++|.+..+ .+... +.....+.......
T Consensus 314 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 393 (711)
T TIGR00958 314 VFLAEKVFGKRYQLLSEELQEAVAKANQVAEEALSGMRTVRSFAAEEGEASRFKEALEETLQLNKRKALAYAGYLWTTSV 393 (711)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444556666677777778888888999999999999999999921110 01111 11111111111111
Q ss_pred -HHHHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCccccccCCC
Q 037346 273 -GAPTFVSVVTFGSCILLGIPLESGMILSALTTFKILQEPIYYLPESISMMIQAKVPLDRIASFLCLEGLQTDVLEKMPR 351 (1156)
Q Consensus 273 -~~~~~~~~~~f~~~~~~~~~lt~~~~ft~l~~~~~l~~pl~~l~~~~~~~~~a~~s~~Ri~~fl~~~~~~~~~~~~~~~ 351 (1156)
.....+..+.++.+.+..+.+|+|.+++++.++..+..|+..++..+..+.+++++.+||.++++.++..+......+
T Consensus 394 ~~~~~~~~il~~g~~lv~~g~it~G~lva~~~~~~~l~~~l~~l~~~~~~~~~~~~a~~ri~~~l~~~~~~~~~~~~~~- 472 (711)
T TIGR00958 394 LGMLIQVLVLYYGGQLVLTGKVSSGNLVSFLLYQEQLGEAVRVLSYVYSGMMQAVGASEKVFEYLDRKPNIPLTGTLAP- 472 (711)
T ss_pred HHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCCCCCC-
Confidence 111223455677888888999999999999999999999999999999999999999999999987644322111111
Q ss_pred CCCCccEEEeeeEEEeCCCCCCCccccceEEeeCCeEEEEEcCCCCChHHHHHHHhCCCCCCCcEEEEcC----------
Q 037346 352 GNSDTAIEIIDGSFSWDFSSPNPTLRNINLKVFHGMRVAVCGTVGSGKSSCLSCILGGVPKESGIIRLCG---------- 421 (1156)
Q Consensus 352 ~~~~~~i~~~~~~f~~~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKSTll~~i~g~~~~~~G~i~~~g---------- 421 (1156)
.+..+.|+++|++|+|+.++++++|+|+||+|++||.++||||||||||||+++|+|+++|++|+|.+||
T Consensus 473 ~~~~~~I~~~nVsf~Y~~~~~~~vL~~isl~i~~Ge~vaIvG~SGsGKSTLl~lL~gl~~p~~G~I~idg~~i~~~~~~~ 552 (711)
T TIGR00958 473 LNLEGLIEFQDVSFSYPNRPDVPVLKGLTFTLHPGEVVALVGPSGSGKSTVAALLQNLYQPTGGQVLLDGVPLVQYDHHY 552 (711)
T ss_pred CCCCCeEEEEEEEEECCCCCCCccccCceEEEcCCCEEEEECCCCCCHHHHHHHHHhccCCCCCEEEECCEEHHhcCHHH
Confidence 1234569999999999865456899999999999999999999999999999999999999999999998
Q ss_pred ---eEEEEecCCcCCCccHHHHhhcCCC-CCHHHHHHHHHHhCCchhhhhCCCCCccccccCCCCCCHHHHHHHHHHHhh
Q 037346 422 ---TKAYVAQSPWIQSGKIEENILFGKE-MDRERYERVLEACSLKKDLEVLPFGDQTIIGERGINLSGGQKQRIQIARPL 497 (1156)
Q Consensus 422 ---~~~~v~Q~~~~~~~ti~eni~~~~~-~~~~~~~~~~~~~~l~~~~~~~~~g~~t~v~~~g~~LSgGqkqRi~lAral 497 (1156)
+++||||+|++|++||+|||.+|.+ .+++++.++++.++++++++.+|+|++|.+|++|.+||||||||++||||+
T Consensus 553 lr~~i~~v~Q~~~lF~gTIreNI~~g~~~~~~e~i~~al~~a~l~~~i~~lp~GldT~ige~G~~LSGGQkQRlalARAL 632 (711)
T TIGR00958 553 LHRQVALVGQEPVLFSGSVRENIAYGLTDTPDEEIMAAAKAANAHDFIMEFPNGYDTEVGEKGSQLSGGQKQRIAIARAL 632 (711)
T ss_pred HHhhceEEecCccccccCHHHHHhcCCCCCCHHHHHHHHHHcCCHHHHHhCCCccCCcccCCCCcCCHHHHHHHHHHHHH
Confidence 4799999999999999999999964 678899999999999999999999999999999999999999999999999
Q ss_pred ccCCCeeeeeCCCCCcCHHHHHHHHHHHHhcCCCEEEEEccCCCccccCCEEEEEeCCeEEEccChHHHHhcCcchHHH
Q 037346 498 YQDADIFLLDDPFSPVDDHTGAHLFKFCWVSSSKTVIYATHQVEFLPAADLILVIKDGKITQAGKYSDILNSGTDFMEL 576 (1156)
Q Consensus 498 ~~~~~illlDep~s~lD~~~~~~i~~~~~~~~~~tvi~vtH~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~~~~~~~~ 576 (1156)
+++|+|+|||||||+||+++++.+.+ ....+++|+|+||||++.+..||+|++|++|+|++.|+|+|++++++.|.++
T Consensus 633 l~~p~ILILDEpTSaLD~~te~~i~~-~~~~~~~TvIiItHrl~~i~~aD~IivL~~G~ive~Gt~~eL~~~~~~y~~l 710 (711)
T TIGR00958 633 VRKPRVLILDEATSALDAECEQLLQE-SRSRASRTVLLIAHRLSTVERADQILVLKKGSVVEMGTHKQLMEDQGCYKHL 710 (711)
T ss_pred hcCCCEEEEEccccccCHHHHHHHHH-hhccCCCeEEEEeccHHHHHhCCEEEEEECCEEEEeeCHHHHHhCCCchHhc
Confidence 99999999999999999999999887 3335789999999999999999999999999999999999999877666553
|
|
| >TIGR03796 NHPM_micro_ABC1 NHPM bacteriocin system ABC transporter, peptidase/ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.4e-66 Score=653.34 Aligned_cols=506 Identities=20% Similarity=0.239 Sum_probs=398.1
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcccc-----hhhHH-----HHHHHHHHHHHHHHH
Q 037346 70 RLAKVLFFSAWQEILFIAILALLYTLATYVGPYLIDNFVQYLNGRQAFEY-----EGYVL-----CLSERHWFFQVQQFG 139 (1156)
Q Consensus 70 ~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~p~ll~~~i~~~~~~~~~~~-----~g~~l-----~~~~~~~~~~~~~~~ 139 (1156)
+.++..++.+++.++..++..++..++.++.|++++.++|.+........ .++++ .+......+...+++
T Consensus 143 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~p~~~~~iid~v~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 222 (710)
T TIGR03796 143 RALWRRLRGSRGALLYLLLAGLLLVLPGLVIPAFSQIFVDEILVQGRQDWLRPLLLGMGLTALLQGVLTWLQLYYLRRLQ 222 (710)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455567777788888899999999999999999999997754322111 11111 112222234457788
Q ss_pred HHHHHHHHHHHHHHHhcCCccccCCCCHHHHHHHHHHHHHH--------------------HHHHHHHHHHHHHHHHHHH
Q 037346 140 IRFRATLFAMIYNKGLTLSGQAKQGNTSGEIINLIAVDAER--------------------ALLILYKKLGLASIATLLA 199 (1156)
Q Consensus 140 ~~~r~~l~~~i~~k~l~l~~~~~~~~~~g~i~nl~s~D~~~--------------------~~~ll~~~lg~~~l~~~~~ 199 (1156)
.++...++..+|+|.++++...+++.++|+++++++.|..- .++++++.-++.+++.++.
T Consensus 223 ~~~~~~l~~~~~~~ll~l~~~~~~~~~~g~~~~r~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~li~l~~ 302 (710)
T TIGR03796 223 IKLAVGMSARFLWHILRLPVRFFAQRHAGDIASRVQLNDQVAEFLSGQLATTALDAVMLVFYALLMLLYDPVLTLIGIAF 302 (710)
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHcCCcccHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 89999999999999999999988999999999999887432 0111122112222333333
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH---------HHHHHHHHHHHHHHHHHHHH
Q 037346 200 TAIVMLANFPLGRLREKFQDKFMETKDRRIKATSEILRNMRILKLQGWELK---------KNETAWLKKSVYTEAMISFF 270 (1156)
Q Consensus 200 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~r~~~~~e~l~~i~~IK~~~~e~r---------~~e~~~~~~~~~~~~~~~~~ 270 (1156)
+++.+.+...+.+...+..++.++..+++.+.+.|.++|+++||.+++|.+ .++.+...+..........+
T Consensus 303 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~i~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 382 (710)
T TIGR03796 303 AAINVLALQLVSRRRVDANRRLQQDAGKLTGVAISGLQSIETLKASGLESDFFSRWAGYQAKLLNAQQELGVLTQILGVL 382 (710)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444455566667777778888888899999999999999999999811 11111111111111111111
Q ss_pred HHH--HHHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCcccc--
Q 037346 271 CWG--APTFVSVVTFGSCILLGIPLESGMILSALTTFKILQEPIYYLPESISMMIQAKVPLDRIASFLCLEGLQTDVL-- 346 (1156)
Q Consensus 271 ~~~--~~~~~~~~~f~~~~~~~~~lt~~~~ft~l~~~~~l~~pl~~l~~~~~~~~~a~~s~~Ri~~fl~~~~~~~~~~-- 346 (1156)
... ....+.+++++++.+..+.+|.|.++++..++..+..|+..++..+..+.+++++++|+.++++.++......
T Consensus 383 ~~~i~~~~~~~il~~g~~~v~~g~lt~G~lva~~~l~~~~~~p~~~l~~~~~~~~~~~~~~~ri~~il~~~~e~~~~~~~ 462 (710)
T TIGR03796 383 PTLLTSLNSALILVVGGLRVMEGQLTIGMLVAFQSLMSSFLEPVNNLVGFGGTLQELEGDLNRLDDVLRNPVDPLLEEEE 462 (710)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcccccccc
Confidence 111 1122345678888888999999999999999999999999999999999999999999999998764332111
Q ss_pred --c--cCCCCCCCccEEEeeeEEEeCCCCCCCccccceEEeeCCeEEEEEcCCCCChHHHHHHHhCCCCCCCcEEEEcC-
Q 037346 347 --E--KMPRGNSDTAIEIIDGSFSWDFSSPNPTLRNINLKVFHGMRVAVCGTVGSGKSSCLSCILGGVPKESGIIRLCG- 421 (1156)
Q Consensus 347 --~--~~~~~~~~~~i~~~~~~f~~~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKSTll~~i~g~~~~~~G~i~~~g- 421 (1156)
. ..+.....+.|+++|++|+|+.. ++++|+|+||+|++||.++|+||||||||||+++|+|+++|++|+|.+||
T Consensus 463 ~~~~~~~~~~~~~~~I~~~~vsf~y~~~-~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLlklL~gl~~p~~G~I~idg~ 541 (710)
T TIGR03796 463 APAAGSEPSPRLSGYVELRNITFGYSPL-EPPLIENFSLTLQPGQRVALVGGSGSGKSTIAKLVAGLYQPWSGEILFDGI 541 (710)
T ss_pred ccccccccCCCCCCeEEEEEEEEecCCC-CCCcccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCE
Confidence 0 01101224579999999999843 46799999999999999999999999999999999999999999999998
Q ss_pred ------------eEEEEecCCcCCCccHHHHhhcCC-CCCHHHHHHHHHHhCCchhhhhCCCCCccccccCCCCCCHHHH
Q 037346 422 ------------TKAYVAQSPWIQSGKIEENILFGK-EMDRERYERVLEACSLKKDLEVLPFGDQTIIGERGINLSGGQK 488 (1156)
Q Consensus 422 ------------~~~~v~Q~~~~~~~ti~eni~~~~-~~~~~~~~~~~~~~~l~~~~~~~~~g~~t~v~~~g~~LSgGqk 488 (1156)
+++||||+|++|++||+|||.++. +.+++++.++++.+++++++..+|+|++|.+|++|.+||||||
T Consensus 542 ~i~~~~~~~lr~~i~~v~Q~~~lf~gTi~eNi~l~~~~~~~~~i~~al~~~~l~~~i~~lp~gl~t~i~e~G~~LSGGQr 621 (710)
T TIGR03796 542 PREEIPREVLANSVAMVDQDIFLFEGTVRDNLTLWDPTIPDADLVRACKDAAIHDVITSRPGGYDAELAEGGANLSGGQR 621 (710)
T ss_pred eHHHCCHHHHHhheeEEecCChhhhccHHHHhhCCCCCCCHHHHHHHHHHhCCHHHHHhCcCcccceeccCCCCCCHHHH
Confidence 379999999999999999999886 4788999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhccCCCeeeeeCCCCCcCHHHHHHHHHHHHhcCCCEEEEEccCCCccccCCEEEEEeCCeEEEccChHHHHh
Q 037346 489 QRIQIARPLYQDADIFLLDDPFSPVDDHTGAHLFKFCWVSSSKTVIYATHQVEFLPAADLILVIKDGKITQAGKYSDILN 568 (1156)
Q Consensus 489 qRi~lAral~~~~~illlDep~s~lD~~~~~~i~~~~~~~~~~tvi~vtH~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~ 568 (1156)
|||+||||++++|+|+|||||||+||+++++++++.+.. .++|+|+||||++.++.||+|++|++|++++.|+|+++++
T Consensus 622 QRiaLARall~~p~iliLDEptS~LD~~te~~i~~~l~~-~~~T~IiitHrl~~i~~~D~Iivl~~G~i~~~G~~~~Ll~ 700 (710)
T TIGR03796 622 QRLEIARALVRNPSILILDEATSALDPETEKIIDDNLRR-RGCTCIIVAHRLSTIRDCDEIIVLERGKVVQRGTHEELWA 700 (710)
T ss_pred HHHHHHHHHhhCCCEEEEECccccCCHHHHHHHHHHHHh-cCCEEEEEecCHHHHHhCCEEEEEeCCEEEEecCHHHHHH
Confidence 999999999999999999999999999999999887754 6899999999999999999999999999999999999998
Q ss_pred cCcchHHHH
Q 037346 569 SGTDFMELV 577 (1156)
Q Consensus 569 ~~~~~~~~~ 577 (1156)
.++.|.+++
T Consensus 701 ~~~~y~~l~ 709 (710)
T TIGR03796 701 VGGAYARLI 709 (710)
T ss_pred cCCcHHHHh
Confidence 877777654
|
This protein describes an multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHPM, Nitrile Hydratase Propeptide Microcin. |
| >TIGR01193 bacteriocin_ABC ABC-type bacteriocin transporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.5e-66 Score=649.92 Aligned_cols=504 Identities=22% Similarity=0.313 Sum_probs=395.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcccc-----hhhHH-----HHHHHHHHHHHHHHHH
Q 037346 71 LAKVLFFSAWQEILFIAILALLYTLATYVGPYLIDNFVQYLNGRQAFEY-----EGYVL-----CLSERHWFFQVQQFGI 140 (1156)
Q Consensus 71 l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~p~ll~~~i~~~~~~~~~~~-----~g~~l-----~~~~~~~~~~~~~~~~ 140 (1156)
.+...++.+++.++..+++.++..++.++.|++++.++|.+........ .++++ .++.....+...+.+.
T Consensus 146 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~p~~~~~iiD~v~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 225 (708)
T TIGR01193 146 KFIPLITRQKKLIVNIVIAAIIVTLISIAGSYYLQKIIDTYIPHKMMGTLGIISIGLIIAYIIQQILSYIQIFLLNVLGQ 225 (708)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445667778888888888999999999999999999997654322111 11111 1111222234567788
Q ss_pred HHHHHHHHHHHHHHhcCCccccCCCCHHHHHHHHHHHHHH---------------------HHHHHHHHHHHHHHHHHHH
Q 037346 141 RFRATLFAMIYNKGLTLSGQAKQGNTSGEIINLIAVDAER---------------------ALLILYKKLGLASIATLLA 199 (1156)
Q Consensus 141 ~~r~~l~~~i~~k~l~l~~~~~~~~~~g~i~nl~s~D~~~---------------------~~~ll~~~lg~~~l~~~~~ 199 (1156)
++...++..+|+|.++++...+++.++|+++++++ |++. .+.++++.-+..+++.+++
T Consensus 226 ~~~~~l~~~~~~~ll~l~~~~f~~~~~G~~~~r~~-~~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~li~l~~ 304 (708)
T TIGR01193 226 RLSIDIILSYIKHLFELPMSFFSTRRTGEIVSRFT-DASSIIDALASTILSLFLDMWILVIVGLFLVRQNMLLFLLSLLS 304 (708)
T ss_pred HHHHHHHHHHHHHHHcCCHHHhCCCchhHHHHHhh-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 88899999999999999999999999999999998 7765 0011111111122222223
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH---H---HHHH---HHHHHHHHHHHH
Q 037346 200 TAIVMLANFPLGRLREKFQDKFMETKDRRIKATSEILRNMRILKLQGWELKKNE---T---AWLK---KSVYTEAMISFF 270 (1156)
Q Consensus 200 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~r~~~~~e~l~~i~~IK~~~~e~r~~e---~---~~~~---~~~~~~~~~~~~ 270 (1156)
+++.+++...+.+...+..++.++..+++.+.+.|.++|+++||.+++|.+..+ . +..+ +..........+
T Consensus 305 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 384 (708)
T TIGR01193 305 IPVYAVIIILFKRTFNKLNHDAMQANAVLNSSIIEDLNGIETIKSLTSEAERYSKIDSEFGDYLNKSFKYQKADQGQQAI 384 (708)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333344445566777777888888888899999999999999999999822111 0 0011 111111111111
Q ss_pred HHH--HHHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCcccccc
Q 037346 271 CWG--APTFVSVVTFGSCILLGIPLESGMILSALTTFKILQEPIYYLPESISMMIQAKVPLDRIASFLCLEGLQTDVLEK 348 (1156)
Q Consensus 271 ~~~--~~~~~~~~~f~~~~~~~~~lt~~~~ft~l~~~~~l~~pl~~l~~~~~~~~~a~~s~~Ri~~fl~~~~~~~~~~~~ 348 (1156)
... ....+.++++|++.+..+.+|+|.++++..++..+..|+..+...+..+.+++++.+|+.++++.++..+.....
T Consensus 385 ~~~~~~~~~i~il~~g~~lv~~g~ls~G~lva~~~l~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~l~~~~e~~~~~~~ 464 (708)
T TIGR01193 385 KAVTKLILNVVILWTGAYLVMRGKLTLGQLITFNALLSYFLTPLENIINLQPKLQAARVANNRLNEVYLVDSEFINKKKR 464 (708)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcccccccc
Confidence 111 112334667888988999999999999999999999999999999999999999999999999876432211110
Q ss_pred CCCCCCCccEEEeeeEEEeCCCCCCCccccceEEeeCCeEEEEEcCCCCChHHHHHHHhCCCCCCCcEEEEcC-------
Q 037346 349 MPRGNSDTAIEIIDGSFSWDFSSPNPTLRNINLKVFHGMRVAVCGTVGSGKSSCLSCILGGVPKESGIIRLCG------- 421 (1156)
Q Consensus 349 ~~~~~~~~~i~~~~~~f~~~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKSTll~~i~g~~~~~~G~i~~~g------- 421 (1156)
.+.....+.|+++|++|+|+. ++++|+|+||+|++|+.++|+||||||||||+++|+|+++|++|+|.+||
T Consensus 465 ~~~~~~~~~I~~~~vsf~y~~--~~~iL~~isl~i~~G~~vaIvG~SGsGKSTLlklL~gl~~p~~G~I~idg~~i~~~~ 542 (708)
T TIGR01193 465 TELNNLNGDIVINDVSYSYGY--GSNILSDISLTIKMNSKTTIVGMSGSGKSTLAKLLVGFFQARSGEILLNGFSLKDID 542 (708)
T ss_pred cCCCCCCCcEEEEEEEEEcCC--CCcceeceeEEECCCCEEEEECCCCCCHHHHHHHHhccCCCCCcEEEECCEEHHHcC
Confidence 111223457999999999973 45799999999999999999999999999999999999999999999998
Q ss_pred ------eEEEEecCCcCCCccHHHHhhcCC--CCCHHHHHHHHHHhCCchhhhhCCCCCccccccCCCCCCHHHHHHHHH
Q 037346 422 ------TKAYVAQSPWIQSGKIEENILFGK--EMDRERYERVLEACSLKKDLEVLPFGDQTIIGERGINLSGGQKQRIQI 493 (1156)
Q Consensus 422 ------~~~~v~Q~~~~~~~ti~eni~~~~--~~~~~~~~~~~~~~~l~~~~~~~~~g~~t~v~~~g~~LSgGqkqRi~l 493 (1156)
+++||||+|++|++||+|||.++. ..+++++.++++.+++++++..+|.|++|.+|++|.+||||||||++|
T Consensus 543 ~~~lr~~i~~v~Q~~~lf~gTI~eNi~l~~~~~~~~~~i~~a~~~a~l~~~i~~lp~gldt~i~e~G~~LSgGQrQRial 622 (708)
T TIGR01193 543 RHTLRQFINYLPQEPYIFSGSILENLLLGAKENVSQDEIWAACEIAEIKDDIENMPLGYQTELSEEGSSISGGQKQRIAL 622 (708)
T ss_pred HHHHHHheEEEecCceehhHHHHHHHhccCCCCCCHHHHHHHHHHhCCHHHHHhcccccCcEecCCCCCCCHHHHHHHHH
Confidence 379999999999999999999983 477889999999999999999999999999999999999999999999
Q ss_pred HHhhccCCCeeeeeCCCCCcCHHHHHHHHHHHHhcCCCEEEEEccCCCccccCCEEEEEeCCeEEEccChHHHHhcCcch
Q 037346 494 ARPLYQDADIFLLDDPFSPVDDHTGAHLFKFCWVSSSKTVIYATHQVEFLPAADLILVIKDGKITQAGKYSDILNSGTDF 573 (1156)
Q Consensus 494 Aral~~~~~illlDep~s~lD~~~~~~i~~~~~~~~~~tvi~vtH~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~~~~~ 573 (1156)
|||++++|+++|||||||+||+++++++.+.+...+++|+|+||||++.+..||+|++|++|++++.|+|+++++.++.|
T Consensus 623 ARall~~p~iliLDE~Ts~LD~~te~~i~~~L~~~~~~T~IiitHr~~~~~~~D~i~~l~~G~i~~~G~~~~L~~~~~~y 702 (708)
T TIGR01193 623 ARALLTDSKVLILDESTSNLDTITEKKIVNNLLNLQDKTIIFVAHRLSVAKQSDKIIVLDHGKIIEQGSHDELLDRNGFY 702 (708)
T ss_pred HHHHhhCCCEEEEeCccccCCHHHHHHHHHHHHHhcCCEEEEEecchHHHHcCCEEEEEECCEEEEECCHHHHHhcCCcH
Confidence 99999999999999999999999999998877656689999999999999999999999999999999999999887777
Q ss_pred HHHH
Q 037346 574 MELV 577 (1156)
Q Consensus 574 ~~~~ 577 (1156)
.+++
T Consensus 703 ~~l~ 706 (708)
T TIGR01193 703 ASLI 706 (708)
T ss_pred HHHh
Confidence 7765
|
This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc. |
| >TIGR03375 type_I_sec_LssB type I secretion system ATPase, LssB family | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-65 Score=647.42 Aligned_cols=498 Identities=25% Similarity=0.321 Sum_probs=395.0
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcccc-----hhhHH-----HHHHHHHHHHHHHH
Q 037346 69 LRLAKVLFFSAWQEILFIAILALLYTLATYVGPYLIDNFVQYLNGRQAFEY-----EGYVL-----CLSERHWFFQVQQF 138 (1156)
Q Consensus 69 ~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~p~ll~~~i~~~~~~~~~~~-----~g~~l-----~~~~~~~~~~~~~~ 138 (1156)
.+.++..++.+++.+...+++.++..++.++.|++++.++|.+........ .++++ .+......+...+.
T Consensus 135 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~p~~~~~iiD~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 214 (694)
T TIGR03375 135 KHWFWSTLKESWPLYRDVLIASLLINLLALASPLFVMNVYDRVVPNQAFETLWVLAIGVALAIVFDFVLKTLRSYFLDVA 214 (694)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCcHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445666778888889999999999999999999999999997753322111 11111 11222223345678
Q ss_pred HHHHHHHHHHHHHHHHhcCCccccCCCCHHHHHHHHHHHHHH---------------------HHHHHHHHHHHHHHHHH
Q 037346 139 GIRFRATLFAMIYNKGLTLSGQAKQGNTSGEIINLIAVDAER---------------------ALLILYKKLGLASIATL 197 (1156)
Q Consensus 139 ~~~~r~~l~~~i~~k~l~l~~~~~~~~~~g~i~nl~s~D~~~---------------------~~~ll~~~lg~~~l~~~ 197 (1156)
+.++...++..+|+|.++++... .+.++|++++++ +|++. .+.++++.-++.+++.+
T Consensus 215 ~~~~~~~l~~~~~~~ll~l~~~~-~~~~~G~~~~r~-~d~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~li~l 292 (694)
T TIGR03375 215 GKKADLILSAKLFERVLGLRMEA-RPASVGSFANQL-REFESVRDFFTSATLTALIDLPFALLFLLVIAIIGGPLVWVPL 292 (694)
T ss_pred HHHHHHHHHHHHHHHHhCCCccc-CCCChhHHHHHH-HHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 88999999999999999999876 688999999998 68876 01112222222333333
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH---------HHHHHHHHHHHHHHHHH
Q 037346 198 LATAIVMLANFPLGRLREKFQDKFMETKDRRIKATSEILRNMRILKLQGWELKK---------NETAWLKKSVYTEAMIS 268 (1156)
Q Consensus 198 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~r~~~~~e~l~~i~~IK~~~~e~r~---------~e~~~~~~~~~~~~~~~ 268 (1156)
+++++.+++...+.+...+..++.++..+++.+.+.|.++|+++||.+++|.+. +..+...+.........
T Consensus 293 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 372 (694)
T TIGR03375 293 VAIPLILLPGLLLQRPLSRLAEESMRESAQRNAVLVESLSGLETIKALNAEGRFQRRWEQTVAALARSGLKSRFLSNLAT 372 (694)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444555566677778888888899999999999999999999999988111 11111111111111111
Q ss_pred HHHHHH--HHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCcccc
Q 037346 269 FFCWGA--PTFVSVVTFGSCILLGIPLESGMILSALTTFKILQEPIYYLPESISMMIQAKVPLDRIASFLCLEGLQTDVL 346 (1156)
Q Consensus 269 ~~~~~~--~~~~~~~~f~~~~~~~~~lt~~~~ft~l~~~~~l~~pl~~l~~~~~~~~~a~~s~~Ri~~fl~~~~~~~~~~ 346 (1156)
.+.... ...+.++++|++.+..+.+|+|.+++++.++..+..|+..++..+..+.+++++++|+.++++.++..+...
T Consensus 373 ~~~~~~~~~~~~~il~~g~~~v~~g~ls~G~l~a~~~~~~~~~~p~~~l~~~~~~~~~~~~~~~ri~~il~~~~e~~~~~ 452 (694)
T TIGR03375 373 NFAQFIQQLVSVAIVVVGVYLISDGELTMGGLIACVMLSGRALAPLGQLAGLLTRYQQAKTALQSLDELMQLPVERPEGT 452 (694)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCC
Confidence 111111 122335678888888899999999999999999999999999999999999999999999998765322111
Q ss_pred ccCCCCCCCccEEEeeeEEEeCCCCCCCccccceEEeeCCeEEEEEcCCCCChHHHHHHHhCCCCCCCcEEEEcC-----
Q 037346 347 EKMPRGNSDTAIEIIDGSFSWDFSSPNPTLRNINLKVFHGMRVAVCGTVGSGKSSCLSCILGGVPKESGIIRLCG----- 421 (1156)
Q Consensus 347 ~~~~~~~~~~~i~~~~~~f~~~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKSTll~~i~g~~~~~~G~i~~~g----- 421 (1156)
...+.....+.|+++|++|+|+.. ++++|+|+||+|++||.++|+|+||||||||+++|+|+|+|++|+|.+||
T Consensus 453 ~~~~~~~~~~~I~~~~vsf~Y~~~-~~~vL~~i~l~i~~G~~iaIvG~sGsGKSTLlklL~gl~~p~~G~I~idg~~l~~ 531 (694)
T TIGR03375 453 RFLHRPRLQGEIEFRNVSFAYPGQ-ETPALDNVSLTIRPGEKVAIIGRIGSGKSTLLKLLLGLYQPTEGSVLLDGVDIRQ 531 (694)
T ss_pred CCCCCCCccceEEEEEEEEEeCCC-CccceeeeeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEhhh
Confidence 111111223569999999999742 45799999999999999999999999999999999999999999999998
Q ss_pred --------eEEEEecCCcCCCccHHHHhhcCCC-CCHHHHHHHHHHhCCchhhhhCCCCCccccccCCCCCCHHHHHHHH
Q 037346 422 --------TKAYVAQSPWIQSGKIEENILFGKE-MDRERYERVLEACSLKKDLEVLPFGDQTIIGERGINLSGGQKQRIQ 492 (1156)
Q Consensus 422 --------~~~~v~Q~~~~~~~ti~eni~~~~~-~~~~~~~~~~~~~~l~~~~~~~~~g~~t~v~~~g~~LSgGqkqRi~ 492 (1156)
+++||||+|++|++||+|||.++.+ .+++++.++++.+++.++++.+|+|++|.+|++|.+||||||||++
T Consensus 532 ~~~~~lr~~i~~v~Q~~~lf~~TI~eNi~~~~~~~~~~~i~~a~~~~~l~~~i~~lp~gl~T~i~e~G~~LSgGQrQRla 611 (694)
T TIGR03375 532 IDPADLRRNIGYVPQDPRLFYGTLRDNIALGAPYADDEEILRAAELAGVTEFVRRHPDGLDMQIGERGRSLSGGQRQAVA 611 (694)
T ss_pred CCHHHHHhccEEECCChhhhhhhHHHHHhCCCCCCCHHHHHHHHHHcChHHHHHhCcccccceecCCCCCCCHHHHHHHH
Confidence 4799999999999999999999976 7899999999999999999999999999999999999999999999
Q ss_pred HHHhhccCCCeeeeeCCCCCcCHHHHHHHHHHHHh-cCCCEEEEEccCCCccccCCEEEEEeCCeEEEccChHHHHhc
Q 037346 493 IARPLYQDADIFLLDDPFSPVDDHTGAHLFKFCWV-SSSKTVIYATHQVEFLPAADLILVIKDGKITQAGKYSDILNS 569 (1156)
Q Consensus 493 lAral~~~~~illlDep~s~lD~~~~~~i~~~~~~-~~~~tvi~vtH~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~ 569 (1156)
||||++++|+++|||||||+||+++++++.+.+.. .+++|+|+||||++.++.||+|++|++|++++.|+|+++++.
T Consensus 612 lARall~~p~iliLDE~Ts~LD~~te~~i~~~l~~~~~~~T~iiItHrl~~~~~~D~iivl~~G~i~e~G~~~eLl~~ 689 (694)
T TIGR03375 612 LARALLRDPPILLLDEPTSAMDNRSEERFKDRLKRWLAGKTLVLVTHRTSLLDLVDRIIVMDNGRIVADGPKDQVLEA 689 (694)
T ss_pred HHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHhCCEEEEEeCCEEEeeCCHHHHHHH
Confidence 99999999999999999999999999999887755 468999999999999999999999999999999999998753
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export. |
| >PRK11176 lipid transporter ATP-binding/permease protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-64 Score=627.74 Aligned_cols=505 Identities=19% Similarity=0.238 Sum_probs=391.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcccc---hh--hHH-----HHHHHHHHHHHHHHHHH
Q 037346 72 AKVLFFSAWQEILFIAILALLYTLATYVGPYLIDNFVQYLNGRQAFEY---EG--YVL-----CLSERHWFFQVQQFGIR 141 (1156)
Q Consensus 72 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~p~ll~~~i~~~~~~~~~~~---~g--~~l-----~~~~~~~~~~~~~~~~~ 141 (1156)
+..+++.+++.++..+++.++..++..+.|++++.+++.+........ .. +++ .++.....+...+++.+
T Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 95 (582)
T PRK11176 16 LWPTIAPFKAGLIVAGVALILNAASDTFMLSLLKPLLDDGFGKADRSVLKWMPLVVIGLMILRGITSFISSYCISWVSGK 95 (582)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344566677777777788888888888899999999987654322111 11 111 11111122334667788
Q ss_pred HHHHHHHHHHHHHhcCCccccCCCCHHHHHHHHHHHHHH---------------------HHHHHHHHHHHHHHHHHHHH
Q 037346 142 FRATLFAMIYNKGLTLSGQAKQGNTSGEIINLIAVDAER---------------------ALLILYKKLGLASIATLLAT 200 (1156)
Q Consensus 142 ~r~~l~~~i~~k~l~l~~~~~~~~~~g~i~nl~s~D~~~---------------------~~~ll~~~lg~~~l~~~~~~ 200 (1156)
+...++..+|+|.++++...+++.++|++++++++|++. .+.++++.-++.+++.++++
T Consensus 96 ~~~~lr~~~~~~l~~~~~~~~~~~~~g~~~~~~~~d~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~l~~l~~~ 175 (582)
T PRK11176 96 VVMTMRRRLFGHMMGMPVSFFDKQSTGTLLSRITYDSEQVASSSSGALITVVREGASIIGLFIMMFYYSWQLSLILIVIA 175 (582)
T ss_pred HHHHHHHHHHHHHHcCCHHHhCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 888999999999999999999999999999999999987 01111111112222222223
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH---HHHHH--HHHHH----HHHHHHHHHHHHH
Q 037346 201 AIVMLANFPLGRLREKFQDKFMETKDRRIKATSEILRNMRILKLQGWE---LKKNE--TAWLK----KSVYTEAMISFFC 271 (1156)
Q Consensus 201 ~~~~~~~~~~~~~~~~~~~~~~~~~d~r~~~~~e~l~~i~~IK~~~~e---~r~~e--~~~~~----~~~~~~~~~~~~~ 271 (1156)
++..++.....+...+..++.++..++..+...|.++|+++||.+++| .++-+ .+... +..........+.
T Consensus 176 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 255 (582)
T PRK11176 176 PIVSIAIRVVSKRFRNISKNMQNTMGQVTTSAEQMLKGHKEVLIFGGQEVETKRFDKVSNRMRQQGMKMVSASSISDPII 255 (582)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333334445566667777778888888889999999999999999998 11111 01111 1111111111111
Q ss_pred HH--HHHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCccccccC
Q 037346 272 WG--APTFVSVVTFGSCILLGIPLESGMILSALTTFKILQEPIYYLPESISMMIQAKVPLDRIASFLCLEGLQTDVLEKM 349 (1156)
Q Consensus 272 ~~--~~~~~~~~~f~~~~~~~~~lt~~~~ft~l~~~~~l~~pl~~l~~~~~~~~~a~~s~~Ri~~fl~~~~~~~~~~~~~ 349 (1156)
.. ....+.+++++.+.+..+.+++|.+.+++.++..+..|+..+...+..+.+++.+++|+.++++.++..+... .
T Consensus 256 ~~~~~~~~~~i~~~g~~~~~~g~is~g~~~~~~~~~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~~~~~~~~~~~~--~ 333 (582)
T PRK11176 256 QLIASLALAFVLYAASFPSVMDTLTAGTITVVFSSMIALMRPLKSLTNVNAQFQRGMAACQTLFAILDLEQEKDEGK--R 333 (582)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCCCCC--c
Confidence 11 1122334566777777889999999999999999999999999999999999999999999998664322111 1
Q ss_pred CCCCCCccEEEeeeEEEeCCCCCCCccccceEEeeCCeEEEEEcCCCCChHHHHHHHhCCCCCCCcEEEEcCe-------
Q 037346 350 PRGNSDTAIEIIDGSFSWDFSSPNPTLRNINLKVFHGMRVAVCGTVGSGKSSCLSCILGGVPKESGIIRLCGT------- 422 (1156)
Q Consensus 350 ~~~~~~~~i~~~~~~f~~~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKSTll~~i~g~~~~~~G~i~~~g~------- 422 (1156)
......+.|+++|++|+|+.. ++++|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.+||.
T Consensus 334 ~~~~~~~~i~~~~vsf~y~~~-~~~il~~i~l~i~~G~~~aIvG~sGsGKSTLl~ll~gl~~p~~G~I~i~g~~i~~~~~ 412 (582)
T PRK11176 334 VIERAKGDIEFRNVTFTYPGK-EVPALRNINFKIPAGKTVALVGRSGSGKSTIANLLTRFYDIDEGEILLDGHDLRDYTL 412 (582)
T ss_pred CCCCCCCeEEEEEEEEecCCC-CCccccCceEEeCCCCEEEEECCCCCCHHHHHHHHHhccCCCCceEEECCEEhhhcCH
Confidence 111223469999999999742 468999999999999999999999999999999999999999999999983
Q ss_pred ------EEEEecCCcCCCccHHHHhhcCCC--CCHHHHHHHHHHhCCchhhhhCCCCCccccccCCCCCCHHHHHHHHHH
Q 037346 423 ------KAYVAQSPWIQSGKIEENILFGKE--MDRERYERVLEACSLKKDLEVLPFGDQTIIGERGINLSGGQKQRIQIA 494 (1156)
Q Consensus 423 ------~~~v~Q~~~~~~~ti~eni~~~~~--~~~~~~~~~~~~~~l~~~~~~~~~g~~t~v~~~g~~LSgGqkqRi~lA 494 (1156)
++||||+|.+|++||+|||.+|.+ .++++++++++.++++++++.+|+|++|.+|++|.+||||||||++||
T Consensus 413 ~~~~~~i~~v~Q~~~lf~~Ti~~Ni~~~~~~~~~~~~i~~al~~~~l~~~i~~lp~Gldt~ig~~g~~LSGGqrQRi~LA 492 (582)
T PRK11176 413 ASLRNQVALVSQNVHLFNDTIANNIAYARTEQYSREQIEEAARMAYAMDFINKMDNGLDTVIGENGVLLSGGQRQRIAIA 492 (582)
T ss_pred HHHHhhceEEccCceeecchHHHHHhcCCCCCCCHHHHHHHHHHhCcHHHHHhcccccCceeCCCCCcCCHHHHHHHHHH
Confidence 699999999999999999999853 688999999999999999999999999999999999999999999999
Q ss_pred HhhccCCCeeeeeCCCCCcCHHHHHHHHHHHHh-cCCCEEEEEccCCCccccCCEEEEEeCCeEEEccChHHHHhcCcch
Q 037346 495 RPLYQDADIFLLDDPFSPVDDHTGAHLFKFCWV-SSSKTVIYATHQVEFLPAADLILVIKDGKITQAGKYSDILNSGTDF 573 (1156)
Q Consensus 495 ral~~~~~illlDep~s~lD~~~~~~i~~~~~~-~~~~tvi~vtH~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~~~~~ 573 (1156)
||++++|+|+|||||||+||+++++.+++.+.. .+++|+|+||||++.++.||+|++|++|++++.|+|+++++.++.|
T Consensus 493 Rall~~~~ililDEptsaLD~~t~~~i~~~l~~~~~~~tvI~VtHr~~~~~~~D~Ii~l~~g~i~e~g~~~~l~~~~~~y 572 (582)
T PRK11176 493 RALLRDSPILILDEATSALDTESERAIQAALDELQKNRTSLVIAHRLSTIEKADEILVVEDGEIVERGTHAELLAQNGVY 572 (582)
T ss_pred HHHHhCCCEEEEECccccCCHHHHHHHHHHHHHHhCCCEEEEEecchHHHHhCCEEEEEECCEEEEeCCHHHHHhCCChH
Confidence 999999999999999999999999999887765 3689999999999999999999999999999999999999888888
Q ss_pred HHHHHh
Q 037346 574 MELVGA 579 (1156)
Q Consensus 574 ~~~~~~ 579 (1156)
++++..
T Consensus 573 ~~l~~~ 578 (582)
T PRK11176 573 AQLHKM 578 (582)
T ss_pred HHHHHH
Confidence 888754
|
|
| >COG1132 MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-65 Score=631.54 Aligned_cols=431 Identities=26% Similarity=0.401 Sum_probs=350.2
Q ss_pred HHHHHHHHHHHHHHHHhccccccccccccccchhhhhcccccccchhhhcccchHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 037346 712 AGYKTATQLFNKMHVCIFRAPMYFFDSTPSGRILNRVSENVKWADQSAADMDIPYDIGAFAFSMIQLLGIIVVMSLVAWQ 791 (1156)
Q Consensus 712 ~~~~~~~~l~~~l~~~ll~~p~~ff~~~~~G~il~R~s~d~~~~d~~~~d~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 791 (1156)
.+.+...++|.++++++++.|++||+++++|++++|++ .|...++..+......+...++.+++.+++++..+|.
T Consensus 79 ~~~~~~~~lr~~~~~~l~~~~~~~~~~~~~g~l~~~~t-----~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 153 (567)
T COG1132 79 LGQKIVADLRRDLFEKLLRLPLSFFDKAKSGDLISRLT-----NDVEAVSNLVSTVLVLVFTSILLLIGSLVLLFSLSWR 153 (567)
T ss_pred HHHHHHHHHHHHHHHHHHhCCHHHhCcCCcchHHHHHH-----hhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhHH
Confidence 44788999999999999999999999999999999999 6666666655555444555677888888889999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhChHHHHHHhhccchhhhhhcchHHHHHHHHHHHHHHHhhHHHHHHH
Q 037346 792 VLIVFVPVIATFIWYQQYYITSTRELSRLIGVCKAPVIQQFSETISGSTTIRSLDQELRFRDTNMKLIDEYSRPKFHIAG 871 (1156)
Q Consensus 792 l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~e~l~Gi~tIra~~~e~~~~~~~~~~~~~~~~~~~~~~~ 871 (1156)
++++++...+++.+...++.++.+...+......+.+.+.+.|+++|+++||+|+.++...+++.+..+...+.......
T Consensus 154 l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~ik~f~~~~~~~~~~~~~~~~~~~~~~~~~~ 233 (567)
T COG1132 154 LALILLLILPLLALVLSLLARKSRKLSRRVREALGELNARLLESLSGIRVIKAFGAEDRELKRFEEANEELRRANLRASR 233 (567)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 98877766666666666666556777777888889999999999999999999999998888887777766665444333
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH---H---------------------HHcCCCccchHHHHHHHhHHHHHHHHhhcCCC
Q 037346 872 AMEWLRFCIDMLSSITFAFSLAF---L---------------------ISVPNGIIHPYKNLERKIISVERILQCACIPS 927 (1156)
Q Consensus 872 ~~~~~~~~l~~~~~~~~~~~~~~---~---------------------~~~~~~~~~~~~~~~~~~~s~~Ri~~~~~~~~ 927 (1156)
....+.....++..+.......+ . ..+..........++....+.+|+.++.+.++
T Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ri~~~l~~~~ 313 (567)
T COG1132 234 LEALLAPLMLLLSSLGTVLVLALGGFLVLSGSLTVGALAAFILYLLRLLTPILQLGEVVSLLQRASAAAERLFELLDEEP 313 (567)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCc
Confidence 33333222222221111111110 0 00011111122566778899999999998755
Q ss_pred CCcccccCCCCCCCCCCCCeEEEEEEEEEEcC--------------CCCceeeCCCCCCHHHHHHHHhhcccCCCceEEE
Q 037346 928 EPALVIEATKPNNSRPSHGEVNIRHLQVRYAP--------------NLPLVLRGRTGSGKSTLIQTLFRIVESTAGHILI 993 (1156)
Q Consensus 928 e~~~~~~~~~~~~~~p~~g~I~~~~Vsf~Y~~--------------~~~~vL~G~SGsGKSTL~~lL~rl~~p~~G~I~i 993 (1156)
+.... . ...++..|+|+|+||+|+|++ ++.++++||||||||||+++|+|+|+|++|+|+|
T Consensus 314 ~~~~~---~--~~~~~~~~~I~f~~vsf~y~~~~~vl~~is~~i~~Ge~vaiVG~sGsGKSTl~~LL~r~~~~~~G~I~i 388 (567)
T COG1132 314 EVEDP---P--DPLKDTIGSIEFENVSFSYPGKKPVLKDISFSIEPGEKVAIVGPSGSGKSTLIKLLLRLYDPTSGEILI 388 (567)
T ss_pred cccCC---C--CCCCCCCCeEEEEEEEEEcCCCCccccCceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCeEEE
Confidence 42211 1 112345688999999999974 3345688999999999999999999999999999
Q ss_pred cCeeCCCCChHHHhhcCeeeccccccccccchhccCCCCC-CCHHHHHHHHHHcCCChHHHhhcCCcccc----------
Q 037346 994 DGKDISLIGLHDLRTRLSIIPQDPTMFEGTTRSNLDPLEE-HADEQIWEALDKCQLGDEVRKKKGKLDSQ---------- 1062 (1156)
Q Consensus 994 dG~di~~i~~~~LR~~i~~VpQdp~LF~gTIr~Nl~~~~~-~~deei~~al~~~~l~~~i~~lp~gl~s~---------- 1062 (1156)
||+||++++.++||++|++|||||+||+|||+|||+++++ ++|||+++|++.++++|+|+++|+||||.
T Consensus 389 dg~dI~~i~~~~lr~~I~~V~Qd~~LF~~TI~~NI~~g~~~at~eei~~a~k~a~~~d~I~~lp~g~dt~vge~G~~LSg 468 (567)
T COG1132 389 DGIDIRDISLDSLRKRIGIVSQDPLLFSGTIRENIALGRPDATDEEIEEALKLANAHEFIANLPDGYDTIVGERGVNLSG 468 (567)
T ss_pred CCEehhhcCHHHHHHhccEEcccceeecccHHHHHhcCCCCCCHHHHHHHHHHhChHHHHHhCcccccceecCCCccCCH
Confidence 9999999999999999999999999999999999999976 68999999999999999999999999976
Q ss_pred --------ccccccCCCEEEEecCCcCCCHHHHHHHHHHHHHhcCCceEEEeecCcccccccCEEEEEeCcEEeeecChh
Q 037346 1063 --------GRVLLKKSKVLVLDEATASVDTATDNQIQQTLRQHFSDCTVVTIAHRITSVLDSAMVLLLNHGLIKEYDSPT 1134 (1156)
Q Consensus 1063 --------ARALLr~~~ILiLDEaTS~LD~~te~~I~~~l~~~~~~~TvI~IaHrl~ti~~~D~I~Vl~~G~IvE~G~~~ 1134 (1156)
|||++|+|+|||||||||+||++||+.|++++++..+++|+|+||||++|+++||+|+|||+|+|+|+|+|+
T Consensus 469 GQrQrlaiARall~~~~ILILDEaTSalD~~tE~~I~~~l~~l~~~rT~iiIaHRlsti~~aD~IiVl~~G~i~e~G~h~ 548 (567)
T COG1132 469 GQRQRLAIARALLRNPPILILDEATSALDTETEALIQDALKKLLKGRTTLIIAHRLSTIKNADRIIVLDNGRIVERGTHE 548 (567)
T ss_pred HHHHHHHHHHHHhcCCCEEEEeccccccCHHhHHHHHHHHHHHhcCCEEEEEeccHhHHHhCCEEEEEECCEEEEecCHH
Confidence 899999999999999999999999999999999888899999999999999999999999999999999999
Q ss_pred HHhcCCCChHHHHHHHHhc
Q 037346 1135 KLLENKSSSFAQLVAEYTS 1153 (1156)
Q Consensus 1135 eLl~~~~g~f~~l~~~~~~ 1153 (1156)
||+++ +|.|++||+.++.
T Consensus 549 eLl~~-~g~y~~l~~~~~~ 566 (567)
T COG1132 549 ELLAK-GGLYARLYQAQGG 566 (567)
T ss_pred HHHHc-CCHHHHHHHHhhc
Confidence 99986 8999999998764
|
|
| >PRK10790 putative multidrug transporter membrane\ATP-binding components; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-63 Score=618.13 Aligned_cols=503 Identities=20% Similarity=0.241 Sum_probs=385.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcccc---hhhHH---------HHHHHHHHHHHHHHH
Q 037346 72 AKVLFFSAWQEILFIAILALLYTLATYVGPYLIDNFVQYLNGRQAFEY---EGYVL---------CLSERHWFFQVQQFG 139 (1156)
Q Consensus 72 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~p~ll~~~i~~~~~~~~~~~---~g~~l---------~~~~~~~~~~~~~~~ 139 (1156)
++.+++.+++.++..+++.++..++..+.|+++..++|.+........ .++++ .+......+...+.+
T Consensus 14 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~iid~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 93 (592)
T PRK10790 14 LLAYGSPWRKPLGLAVLMLWVAAAAEVSGPLLISYFIDNMVAKGNLPLGLVAGLAAAYVGLQLLAAGLHYAQSLLFNRAA 93 (592)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334566677788888888999999999999999999997643222111 11111 111122233446677
Q ss_pred HHHHHHHHHHHHHHHhcCCccccCCCCHHHHHHHHHHHHHH---------------------HHHHHHHHHHHHHHHHHH
Q 037346 140 IRFRATLFAMIYNKGLTLSGQAKQGNTSGEIINLIAVDAER---------------------ALLILYKKLGLASIATLL 198 (1156)
Q Consensus 140 ~~~r~~l~~~i~~k~l~l~~~~~~~~~~g~i~nl~s~D~~~---------------------~~~ll~~~lg~~~l~~~~ 198 (1156)
.++...++..+|+|.++.+...+++.++|++++++++|++. .+.++++.-.+.+++.++
T Consensus 94 ~~~~~~lr~~l~~~l~~~~~~~~~~~~~g~~~~~~~~d~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~li~l~ 173 (592)
T PRK10790 94 VGVVQQLRTDVMDAALRQPLSAFDTQPVGQLISRVTNDTEVIRDLYVTVVATVLRSAALIGAMLVAMFSLDWRMALVAIM 173 (592)
T ss_pred HHHHHHHHHHHHHHHHcCCHHHhCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77888999999999999999888999999999999999987 000011100111111112
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH------HHHHHHHHHH---HHHHHH---
Q 037346 199 ATAIVMLANFPLGRLREKFQDKFMETKDRRIKATSEILRNMRILKLQGWELK------KNETAWLKKS---VYTEAM--- 266 (1156)
Q Consensus 199 ~~~~~~~~~~~~~~~~~~~~~~~~~~~d~r~~~~~e~l~~i~~IK~~~~e~r------~~e~~~~~~~---~~~~~~--- 266 (1156)
++++.+++.....+...+..++..+..++..+...|.++|+++||.|+.|.+ +...+..+.. ....+.
T Consensus 174 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 253 (592)
T PRK10790 174 IFPAVLVVMVIYQRYSTPIVRRVRAYLADINDGFNEVINGMSVIQQFRQQARFGERMGEASRSHYMARMQTLRLDGFLLR 253 (592)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2222222333344555566666667777778889999999999999999811 1101111110 011111
Q ss_pred -HHHHHHHHHHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCccc
Q 037346 267 -ISFFCWGAPTFVSVVTFGSCILLGIPLESGMILSALTTFKILQEPIYYLPESISMMIQAKVPLDRIASFLCLEGLQTDV 345 (1156)
Q Consensus 267 -~~~~~~~~~~~~~~~~f~~~~~~~~~lt~~~~ft~l~~~~~l~~pl~~l~~~~~~~~~a~~s~~Ri~~fl~~~~~~~~~ 345 (1156)
...+......++..+ ++.+ +..+.++.|.+++++.++..+..|+..++..+..+.++..+++||.++++.++.+...
T Consensus 254 ~~~~~~~~~~~~~~~~-~~~~-~~~g~is~g~l~a~~~~~~~~~~pl~~l~~~~~~~~~~~~s~~ri~~~l~~~~~~~~~ 331 (592)
T PRK10790 254 PLLSLFSALILCGLLM-LFGF-SASGTIEVGVLYAFISYLGRLNEPLIELTTQQSMLQQAVVAGERVFELMDGPRQQYGN 331 (592)
T ss_pred HHHHHHHHHHHHHHHH-HHHH-HHCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccCCC
Confidence 010111111111112 2223 3577899999999999999999999999999999999999999999999865432211
Q ss_pred cccCCCCCCCccEEEeeeEEEeCCCCCCCccccceEEeeCCeEEEEEcCCCCChHHHHHHHhCCCCCCCcEEEEcCe---
Q 037346 346 LEKMPRGNSDTAIEIIDGSFSWDFSSPNPTLRNINLKVFHGMRVAVCGTVGSGKSSCLSCILGGVPKESGIIRLCGT--- 422 (1156)
Q Consensus 346 ~~~~~~~~~~~~i~~~~~~f~~~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKSTll~~i~g~~~~~~G~i~~~g~--- 422 (1156)
... ....+.|+++|++|+|+. ++++|+|+||+|++||.++|+|+||||||||+++|+|+++|++|+|.+||.
T Consensus 332 -~~~--~~~~~~i~~~~v~f~y~~--~~~il~~i~l~i~~Ge~iaIvG~SGsGKSTLl~lL~gl~~p~~G~I~idg~~i~ 406 (592)
T PRK10790 332 -DDR--PLQSGRIDIDNVSFAYRD--DNLVLQNINLSVPSRGFVALVGHTGSGKSTLASLLMGYYPLTEGEIRLDGRPLS 406 (592)
T ss_pred -Ccc--CCCCCeEEEEEEEEEeCC--CCceeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCceEEECCEEhh
Confidence 111 112346999999999973 357999999999999999999999999999999999999999999999983
Q ss_pred ----------EEEEecCCcCCCccHHHHhhcCCCCCHHHHHHHHHHhCCchhhhhCCCCCccccccCCCCCCHHHHHHHH
Q 037346 423 ----------KAYVAQSPWIQSGKIEENILFGKEMDRERYERVLEACSLKKDLEVLPFGDQTIIGERGINLSGGQKQRIQ 492 (1156)
Q Consensus 423 ----------~~~v~Q~~~~~~~ti~eni~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~t~v~~~g~~LSgGqkqRi~ 492 (1156)
++||||+|++|++||+|||.++.+.++++..++++.++++++++.+|+|++|.+|++|.+||||||||++
T Consensus 407 ~~~~~~l~~~i~~v~Q~~~lF~~Ti~~NI~~~~~~~d~~i~~a~~~~gl~~~i~~lp~Gldt~i~e~g~~LSGGqrQRia 486 (592)
T PRK10790 407 SLSHSVLRQGVAMVQQDPVVLADTFLANVTLGRDISEEQVWQALETVQLAELARSLPDGLYTPLGEQGNNLSVGQKQLLA 486 (592)
T ss_pred hCCHHHHHhheEEEccCCccccchHHHHHHhCCCCCHHHHHHHHHHcCcHHHHHhccccccccccCCCCCCCHHHHHHHH
Confidence 7999999999999999999999988899999999999999999999999999999999999999999999
Q ss_pred HHHhhccCCCeeeeeCCCCCcCHHHHHHHHHHHHh-cCCCEEEEEccCCCccccCCEEEEEeCCeEEEccChHHHHhcCc
Q 037346 493 IARPLYQDADIFLLDDPFSPVDDHTGAHLFKFCWV-SSSKTVIYATHQVEFLPAADLILVIKDGKITQAGKYSDILNSGT 571 (1156)
Q Consensus 493 lAral~~~~~illlDep~s~lD~~~~~~i~~~~~~-~~~~tvi~vtH~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~~~ 571 (1156)
|||||+++|+|+|||||||+||+++++.+.+.+.. .+++|+|+||||++.++.||+|++|++|++++.|+|+++++.++
T Consensus 487 lARaLl~~~~illlDEpts~LD~~t~~~i~~~l~~~~~~~tvIivtHr~~~l~~~D~ii~l~~G~i~~~G~~~~L~~~~~ 566 (592)
T PRK10790 487 LARVLVQTPQILILDEATANIDSGTEQAIQQALAAVREHTTLVVIAHRLSTIVEADTILVLHRGQAVEQGTHQQLLAAQG 566 (592)
T ss_pred HHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHhCCCEEEEEecchHHHHhCCEEEEEECCEEEEEcCHHHHHhCCC
Confidence 99999999999999999999999999999887755 46799999999999999999999999999999999999998888
Q ss_pred chHHHHHhhh
Q 037346 572 DFMELVGAHK 581 (1156)
Q Consensus 572 ~~~~~~~~~~ 581 (1156)
.|.+++..+.
T Consensus 567 ~y~~l~~~~~ 576 (592)
T PRK10790 567 RYWQMYQLQL 576 (592)
T ss_pred HHHHHHHHHh
Confidence 8998886543
|
|
| >TIGR02203 MsbA_lipidA lipid A export permease/ATP-binding protein MsbA | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-63 Score=616.35 Aligned_cols=504 Identities=20% Similarity=0.241 Sum_probs=395.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcccc----h-hhHH-----HHHHHHHHHHHHHHHHH
Q 037346 72 AKVLFFSAWQEILFIAILALLYTLATYVGPYLIDNFVQYLNGRQAFEY----E-GYVL-----CLSERHWFFQVQQFGIR 141 (1156)
Q Consensus 72 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~p~ll~~~i~~~~~~~~~~~----~-g~~l-----~~~~~~~~~~~~~~~~~ 141 (1156)
+..+++.+++.+++++++.++..++....|++++.+++.......... . ++++ .+......+...+.+.+
T Consensus 5 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~ 84 (571)
T TIGR02203 5 LWSYVRPYKAGLVLAGVAMILVAATESTLAALLKPLLDDGFGGRDRSVLWWVPLVVIGLAVLRGICSFVSTYLLSWVSNK 84 (571)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334667778888899999999999999999999999986543221111 1 1111 11112222345677788
Q ss_pred HHHHHHHHHHHHHhcCCccccCCCCHHHHHHHHHHHHHH---------------------HHHHHHHHHHHHHHHHHHHH
Q 037346 142 FRATLFAMIYNKGLTLSGQAKQGNTSGEIINLIAVDAER---------------------ALLILYKKLGLASIATLLAT 200 (1156)
Q Consensus 142 ~r~~l~~~i~~k~l~l~~~~~~~~~~g~i~nl~s~D~~~---------------------~~~ll~~~lg~~~l~~~~~~ 200 (1156)
+...++..+|+|.++.+...+++.++|++++++++|++. .++++++.-+..+++.++++
T Consensus 85 ~~~~lr~~l~~~~~~~~~~~~~~~~~g~~~~~l~~di~~i~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~l~~i~l~~~ 164 (571)
T TIGR02203 85 VVRDIRVRMFEKLLGLPVSFFDRQPTGTLLSRITFDSEQVASAATDAFIVLVRETLTVIGLFIVLLYYSWQLTLIVVVML 164 (571)
T ss_pred HHHHHHHHHHHHHHcCCHHHhCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 888899999999999999888899999999999999987 01111111111222222333
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH---HHH--HHHHH----HHHHHHHHHHHHH
Q 037346 201 AIVMLANFPLGRLREKFQDKFMETKDRRIKATSEILRNMRILKLQGWELK---KNE--TAWLK----KSVYTEAMISFFC 271 (1156)
Q Consensus 201 ~~~~~~~~~~~~~~~~~~~~~~~~~d~r~~~~~e~l~~i~~IK~~~~e~r---~~e--~~~~~----~~~~~~~~~~~~~ 271 (1156)
++.+.+...+.+......++..+..+++.+.+.|.++|+++||.++.|.+ +-+ .+..+ +.....+....+.
T Consensus 165 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 244 (571)
T TIGR02203 165 PVLSILMRRVSKRLRRISKEIQNSMGQVTTVAEETLQGYRVVKLFGGQAYETRRFDAVSNRNRRLAMKMTSAGSISSPIT 244 (571)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444455666777788888888999999999999999999999998811 100 01111 1111111111111
Q ss_pred HHH--HHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCccccccC
Q 037346 272 WGA--PTFVSVVTFGSCILLGIPLESGMILSALTTFKILQEPIYYLPESISMMIQAKVPLDRIASFLCLEGLQTDVLEKM 349 (1156)
Q Consensus 272 ~~~--~~~~~~~~f~~~~~~~~~lt~~~~ft~l~~~~~l~~pl~~l~~~~~~~~~a~~s~~Ri~~fl~~~~~~~~~~~~~ 349 (1156)
... ...+..++++.+.+..+.+|+|.+++++.++..+..|+..+...+..+.+++++++|+.++++.++..+... .
T Consensus 245 ~~~~~~~~~~~~~~g~~~~~~g~lt~g~l~a~~~~~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~l~~~~~~~~~~--~ 322 (571)
T TIGR02203 245 QLIASLALAVVLFIALFQAQAGSLTAGDFTAFITAMIALIRPLKSLTNVNAPMQRGLAAAESLFTLLDSPPEKDTGT--R 322 (571)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCC--C
Confidence 111 122345567777788899999999999999999999999999999999999999999999998754422111 1
Q ss_pred CCCCCCccEEEeeeEEEeCCCCCCCccccceEEeeCCeEEEEEcCCCCChHHHHHHHhCCCCCCCcEEEEcC--------
Q 037346 350 PRGNSDTAIEIIDGSFSWDFSSPNPTLRNINLKVFHGMRVAVCGTVGSGKSSCLSCILGGVPKESGIIRLCG-------- 421 (1156)
Q Consensus 350 ~~~~~~~~i~~~~~~f~~~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKSTll~~i~g~~~~~~G~i~~~g-------- 421 (1156)
+.....+.|+++|++|+|+.. ++++|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.++|
T Consensus 323 ~~~~~~~~i~~~~v~f~y~~~-~~~il~~inl~i~~G~~v~IvG~sGsGKSTLl~lL~gl~~~~~G~I~i~g~~i~~~~~ 401 (571)
T TIGR02203 323 AIERARGDVEFRNVTFRYPGR-DRPALDSISLVIEPGETVALVGRSGSGKSTLVNLIPRFYEPDSGQILLDGHDLADYTL 401 (571)
T ss_pred CCCCCCCeEEEEEEEEEcCCC-CCccccCeeEEecCCCEEEEECCCCCCHHHHHHHHHhccCCCCCeEEECCEeHHhcCH
Confidence 111223469999999999743 46799999999999999999999999999999999999999999999998
Q ss_pred -----eEEEEecCCcCCCccHHHHhhcCC--CCCHHHHHHHHHHhCCchhhhhCCCCCccccccCCCCCCHHHHHHHHHH
Q 037346 422 -----TKAYVAQSPWIQSGKIEENILFGK--EMDRERYERVLEACSLKKDLEVLPFGDQTIIGERGINLSGGQKQRIQIA 494 (1156)
Q Consensus 422 -----~~~~v~Q~~~~~~~ti~eni~~~~--~~~~~~~~~~~~~~~l~~~~~~~~~g~~t~v~~~g~~LSgGqkqRi~lA 494 (1156)
+++||||+|++|++|++|||.++. +.++++++++++.|++++++..+|+|++|.+|++|.+||||||||++||
T Consensus 402 ~~~~~~i~~v~Q~~~lf~~Ti~~Ni~~~~~~~~~~~~i~~~l~~~~l~~~i~~lp~gldt~i~~~g~~LSgGqrQRiaLA 481 (571)
T TIGR02203 402 ASLRRQVALVSQDVVLFNDTIANNIAYGRTEQADRAEIERALAAAYAQDFVDKLPLGLDTPIGENGVLLSGGQRQRLAIA 481 (571)
T ss_pred HHHHhhceEEccCcccccccHHHHHhcCCCCCCCHHHHHHHHHHcChHHHHHhCcCcccceecCCCCcCCHHHHHHHHHH
Confidence 379999999999999999999995 4889999999999999999999999999999999999999999999999
Q ss_pred HhhccCCCeeeeeCCCCCcCHHHHHHHHHHHHh-cCCCEEEEEccCCCccccCCEEEEEeCCeEEEccChHHHHhcCcch
Q 037346 495 RPLYQDADIFLLDDPFSPVDDHTGAHLFKFCWV-SSSKTVIYATHQVEFLPAADLILVIKDGKITQAGKYSDILNSGTDF 573 (1156)
Q Consensus 495 ral~~~~~illlDep~s~lD~~~~~~i~~~~~~-~~~~tvi~vtH~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~~~~~ 573 (1156)
||++++|+|+|||||||+||+++++++.+.+.. .+++|+|+|||+++.+..||+|++|++|++++.|+++++++.++.|
T Consensus 482 Rall~~~~illLDEpts~LD~~~~~~i~~~L~~~~~~~tiIiitH~~~~~~~~D~ii~l~~g~i~~~g~~~~l~~~~~~~ 561 (571)
T TIGR02203 482 RALLKDAPILILDEATSALDNESERLVQAALERLMQGRTTLVIAHRLSTIEKADRIVVMDDGRIVERGTHNELLARNGLY 561 (571)
T ss_pred HHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHhCCCEEEEEehhhHHHHhCCEEEEEeCCEEEeeCCHHHHHHcCCHH
Confidence 999999999999999999999999999887755 4689999999999999999999999999999999999999877667
Q ss_pred HHHHH
Q 037346 574 MELVG 578 (1156)
Q Consensus 574 ~~~~~ 578 (1156)
.++..
T Consensus 562 ~~~~~ 566 (571)
T TIGR02203 562 AQLHN 566 (571)
T ss_pred HHHHH
Confidence 76554
|
This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes. |
| >PRK13657 cyclic beta-1,2-glucan ABC transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-63 Score=614.32 Aligned_cols=505 Identities=20% Similarity=0.249 Sum_probs=391.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcccc-hhhHH--HHH----HHHHHHHHHHHHHHHHHHH
Q 037346 74 VLFFSAWQEILFIAILALLYTLATYVGPYLIDNFVQYLNGRQAFEY-EGYVL--CLS----ERHWFFQVQQFGIRFRATL 146 (1156)
Q Consensus 74 ~l~~~~~~~~~~~~~~~~~~~~~~~~~p~ll~~~i~~~~~~~~~~~-~g~~l--~~~----~~~~~~~~~~~~~~~r~~l 146 (1156)
.+++.+++.+++.+++.++..++.++.|++++.++|.+........ ...++ .+. .....+...+...+++..+
T Consensus 12 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~iid~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 91 (588)
T PRK13657 12 QYLGAEKRLGILLAVANVLLAAATFAEPILFGRIIDAISGKGDIFPLLAAWAGFGLFNIIAGVLVARHADRLAHRRRLAV 91 (588)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456677778888889999999999999999999998764321110 11111 111 1111223456677888888
Q ss_pred HHHHHHHHhcCCccccCCCCHHHHHHHHHHHHHHH------------------HHHHH--HHHH-HHHHHHHHHHHHHHH
Q 037346 147 FAMIYNKGLTLSGQAKQGNTSGEIINLIAVDAERA------------------LLILY--KKLG-LASIATLLATAIVML 205 (1156)
Q Consensus 147 ~~~i~~k~l~l~~~~~~~~~~g~i~nl~s~D~~~~------------------~~ll~--~~lg-~~~l~~~~~~~~~~~ 205 (1156)
...+|+|.++++...+++.++|++++++++|++.. ++++. ..+. +.+++.++++++...
T Consensus 92 ~~~l~~~l~~~~~~~~~~~~~g~~~~~~~~di~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~l~~~~l~~~ 171 (588)
T PRK13657 92 LTEYFERIIQLPLAWHSQRGSGRALHTLLRGTDALFGLWLEFMREHLATLVALVVLLPLALFMNWRLSLVLVVLGIVYTL 171 (588)
T ss_pred HHHHHHHHHhCCHHHHCcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 89999999999998899999999999999998860 00000 0111 111222222223333
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH------HHHHHHHH---HHHHHHHHHHHH--HHH
Q 037346 206 ANFPLGRLREKFQDKFMETKDRRIKATSEILRNMRILKLQGWELKK------NETAWLKK---SVYTEAMISFFC--WGA 274 (1156)
Q Consensus 206 ~~~~~~~~~~~~~~~~~~~~d~r~~~~~e~l~~i~~IK~~~~e~r~------~e~~~~~~---~~~~~~~~~~~~--~~~ 274 (1156)
+...+.+......++.++..++..+...|.++|+++||.|+.|.+. ...+..+. ..........+. ...
T Consensus 172 i~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 251 (588)
T PRK13657 172 ITTLVMRKTKDGQAAVEEHYHDLFAHVSDAIGNVSVVQSYNRIEAETQALRDIADNLLAAQMPVLSWWALASVLNRAAST 251 (588)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445566667777778888888999999999999999999988111 11011111 001111111111 111
Q ss_pred HHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCccccccCCCCCC
Q 037346 275 PTFVSVVTFGSCILLGIPLESGMILSALTTFKILQEPIYYLPESISMMIQAKVPLDRIASFLCLEGLQTDVLEKMPRGNS 354 (1156)
Q Consensus 275 ~~~~~~~~f~~~~~~~~~lt~~~~ft~l~~~~~l~~pl~~l~~~~~~~~~a~~s~~Ri~~fl~~~~~~~~~~~~~~~~~~ 354 (1156)
...+.+++++++.+..+.+|+|.+++++.++..+..|+..+...+..+..++.+++|+.++++.++..+......+....
T Consensus 252 ~~~~~~~~~g~~~v~~g~lt~g~~~a~~~l~~~~~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~~~~ 331 (588)
T PRK13657 252 ITMLAILVLGAALVQKGQLRVGEVVAFVGFATLLIGRLDQVVAFINQVFMAAPKLEEFFEVEDAVPDVRDPPGAIDLGRV 331 (588)
T ss_pred HHHHHHHHHHHHHHHcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccCCCCCCCCcCCC
Confidence 22344567788888889999999999999999999999999999999999999999999999865432111111111112
Q ss_pred CccEEEeeeEEEeCCCCCCCccccceEEeeCCeEEEEEcCCCCChHHHHHHHhCCCCCCCcEEEEcC-------------
Q 037346 355 DTAIEIIDGSFSWDFSSPNPTLRNINLKVFHGMRVAVCGTVGSGKSSCLSCILGGVPKESGIIRLCG------------- 421 (1156)
Q Consensus 355 ~~~i~~~~~~f~~~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKSTll~~i~g~~~~~~G~i~~~g------------- 421 (1156)
.+.|+++|++|+|+. ++++|+|+||++++|++++|+|+||||||||+++|+|+++|++|+|.+||
T Consensus 332 ~~~I~~~~vsf~y~~--~~~iL~~inl~i~~G~~v~IvG~sGsGKSTLl~lL~gl~~p~~G~I~i~g~~i~~~~~~~~r~ 409 (588)
T PRK13657 332 KGAVEFDDVSFSYDN--SRQGVEDVSFEAKPGQTVAIVGPTGAGKSTLINLLQRVFDPQSGRILIDGTDIRTVTRASLRR 409 (588)
T ss_pred CCeEEEEEEEEEeCC--CCceecceeEEECCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCEEhhhCCHHHHHh
Confidence 346999999999973 35699999999999999999999999999999999999999999999998
Q ss_pred eEEEEecCCcCCCccHHHHhhcCCC-CCHHHHHHHHHHhCCchhhhhCCCCCccccccCCCCCCHHHHHHHHHHHhhccC
Q 037346 422 TKAYVAQSPWIQSGKIEENILFGKE-MDRERYERVLEACSLKKDLEVLPFGDQTIIGERGINLSGGQKQRIQIARPLYQD 500 (1156)
Q Consensus 422 ~~~~v~Q~~~~~~~ti~eni~~~~~-~~~~~~~~~~~~~~l~~~~~~~~~g~~t~v~~~g~~LSgGqkqRi~lAral~~~ 500 (1156)
.++||||+|++|++||+|||.++.+ .++++..++++.+++.+++..+|+|++|.+|++|.+||||||||++||||++++
T Consensus 410 ~i~~v~Q~~~lf~~Ti~~Ni~~~~~~~~d~~i~~al~~~~l~~~i~~lp~gldt~i~~~g~~LSgGq~QRialARall~~ 489 (588)
T PRK13657 410 NIAVVFQDAGLFNRSIEDNIRVGRPDATDEEMRAAAERAQAHDFIERKPDGYDTVVGERGRQLSGGERQRLAIARALLKD 489 (588)
T ss_pred heEEEecCcccccccHHHHHhcCCCCCCHHHHHHHHHHhCHHHHHHhCcccccchhcCCCCCCCHHHHHHHHHHHHHhcC
Confidence 4799999999999999999999964 678889999999999999999999999999999999999999999999999999
Q ss_pred CCeeeeeCCCCCcCHHHHHHHHHHHHh-cCCCEEEEEccCCCccccCCEEEEEeCCeEEEccChHHHHhcCcchHHHHHh
Q 037346 501 ADIFLLDDPFSPVDDHTGAHLFKFCWV-SSSKTVIYATHQVEFLPAADLILVIKDGKITQAGKYSDILNSGTDFMELVGA 579 (1156)
Q Consensus 501 ~~illlDep~s~lD~~~~~~i~~~~~~-~~~~tvi~vtH~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~~~~~~~~~~~ 579 (1156)
|+|+|||||||+||+++++.+++.+.. .+++|+|+||||++.++.||+|++|++|++++.|+++++++..+.|.+++..
T Consensus 490 ~~iliLDEpts~LD~~t~~~i~~~l~~~~~~~tvIiitHr~~~~~~~D~ii~l~~G~i~~~g~~~~l~~~~~~y~~l~~~ 569 (588)
T PRK13657 490 PPILILDEATSALDVETEAKVKAALDELMKGRTTFIIAHRLSTVRNADRILVFDNGRVVESGSFDELVARGGRFAALLRA 569 (588)
T ss_pred CCEEEEeCCccCCCHHHHHHHHHHHHHHhcCCEEEEEEecHHHHHhCCEEEEEECCEEEEeCCHHHHHHCCChHHHHHHH
Confidence 999999999999999999999887755 3689999999999999999999999999999999999999888888888764
Q ss_pred h
Q 037346 580 H 580 (1156)
Q Consensus 580 ~ 580 (1156)
+
T Consensus 570 ~ 570 (588)
T PRK13657 570 Q 570 (588)
T ss_pred h
Confidence 4
|
|
| >PRK11160 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=4e-63 Score=609.19 Aligned_cols=501 Identities=22% Similarity=0.274 Sum_probs=379.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CCCc----ccch--h--hHH-----HHHHHHHHHHHHHHH
Q 037346 74 VLFFSAWQEILFIAILALLYTLATYVGPYLIDNFVQYLN-GRQA----FEYE--G--YVL-----CLSERHWFFQVQQFG 139 (1156)
Q Consensus 74 ~l~~~~~~~~~~~~~~~~~~~~~~~~~p~ll~~~i~~~~-~~~~----~~~~--g--~~l-----~~~~~~~~~~~~~~~ 139 (1156)
.+.+.+++.+++++++.++..++.++.|++++.+++... .+.. .... . +.+ .++.....+...+.+
T Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (574)
T PRK11160 9 KLYKRHWFMLSLGILLAIVTLLASIGLLTLSGWFLSASAVAGLAGLYSFNYMLPAAGVRGAAIGRTAGRYGERLVSHDAT 88 (574)
T ss_pred HHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchhhHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356777888888999999999999999999999999642 2210 1110 1 111 112222234456778
Q ss_pred HHHHHHHHHHHHHHHhcCCccccCCCCHHHHHHHHHHHHHH---------------------HH-HHHHHHHHHHHHHHH
Q 037346 140 IRFRATLFAMIYNKGLTLSGQAKQGNTSGEIINLIAVDAER---------------------AL-LILYKKLGLASIATL 197 (1156)
Q Consensus 140 ~~~r~~l~~~i~~k~l~l~~~~~~~~~~g~i~nl~s~D~~~---------------------~~-~ll~~~lg~~~l~~~ 197 (1156)
.++...++..+|+|.++++...+++.++|++++++++|++. ++ ++++....++.++.+
T Consensus 89 ~~~~~~lR~~l~~~l~~~~~~~~~~~~~g~~~srl~~Dv~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~l~~~~ 168 (574)
T PRK11160 89 FRVLTHLRVFTFSKLLPLSPAGLARYRQGDLLNRLVADVDTLDHLYLRLISPLVAALVVILVLTIGLSFFDLTLALTLGG 168 (574)
T ss_pred HHHHHHHHHHHHHHhhccChHhhccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88999999999999999999999999999999999999988 00 011111111111111
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH------HHHHHHHHH---HHHHHHHHH
Q 037346 198 LATAIVMLANFPLGRLREKFQDKFMETKDRRIKATSEILRNMRILKLQGWELK------KNETAWLKK---SVYTEAMIS 268 (1156)
Q Consensus 198 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~r~~~~~e~l~~i~~IK~~~~e~r------~~e~~~~~~---~~~~~~~~~ 268 (1156)
++.++.+.+...+.+...+..++..+..++..+.+.|.++|+++||.|+.|.+ +...+..+. .....+...
T Consensus 169 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 248 (574)
T PRK11160 169 ILLLLLLLLPLLFYRLGKKPGQDLTHLRAQYRVQLTEWLQGQAELTLFGAEDRYRQQLEQTEQQWLAAQRRQANLTGLSQ 248 (574)
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHCCHHHHHHcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 11111111223345555666777788888888999999999999999999811 111111111 111111111
Q ss_pred HHHHH--HHHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCccc
Q 037346 269 FFCWG--APTFVSVVTFGSCILLGIPLESGMILSALTTFKI-LQEPIYYLPESISMMIQAKVPLDRIASFLCLEGLQTDV 345 (1156)
Q Consensus 269 ~~~~~--~~~~~~~~~f~~~~~~~~~lt~~~~ft~l~~~~~-l~~pl~~l~~~~~~~~~a~~s~~Ri~~fl~~~~~~~~~ 345 (1156)
.+... ....+.+++++.+. ..+.+++|.+++++.+... ...|+..++..+..+.+++++++||.++++.++.....
T Consensus 249 ~~~~~~~~~~~~~i~~~g~~~-~~g~~t~g~l~a~~~~~~~~~~~~~~~l~~~~~~~~~~~~s~~ri~~ll~~~~~~~~~ 327 (574)
T PRK11160 249 ALMILANGLTVVLMLWLAAGG-VGGNAQPGALIALFVFAALAAFEALMPVAGAFQHLGQVIASARRINEITEQKPEVTFP 327 (574)
T ss_pred HHHHHHHHHHHHHHHHHHHHH-hccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCC
Confidence 11111 11122334556665 4677899998887766544 34688888999999999999999999999875432111
Q ss_pred cccCCCCCCCccEEEeeeEEEeCCCCCCCccccceEEeeCCeEEEEEcCCCCChHHHHHHHhCCCCCCCcEEEEcCe---
Q 037346 346 LEKMPRGNSDTAIEIIDGSFSWDFSSPNPTLRNINLKVFHGMRVAVCGTVGSGKSSCLSCILGGVPKESGIIRLCGT--- 422 (1156)
Q Consensus 346 ~~~~~~~~~~~~i~~~~~~f~~~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKSTll~~i~g~~~~~~G~i~~~g~--- 422 (1156)
.. .......+.|+++|++|+|+.. ++++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.+||.
T Consensus 328 ~~-~~~~~~~~~i~~~~v~f~y~~~-~~~il~~i~~~i~~G~~~aivG~sGsGKSTL~~ll~g~~~p~~G~I~i~g~~i~ 405 (574)
T PRK11160 328 TT-STAAADQVSLTLNNVSFTYPDQ-PQPVLKGLSLQIKAGEKVALLGRTGCGKSTLLQLLTRAWDPQQGEILLNGQPIA 405 (574)
T ss_pred cc-cCCCCCCCeEEEEEEEEECCCC-CCcceecceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEhh
Confidence 01 1111223569999999999742 357999999999999999999999999999999999999999999999983
Q ss_pred ----------EEEEecCCcCCCccHHHHhhcCCC-CCHHHHHHHHHHhCCchhhhhCCCCCccccccCCCCCCHHHHHHH
Q 037346 423 ----------KAYVAQSPWIQSGKIEENILFGKE-MDRERYERVLEACSLKKDLEVLPFGDQTIIGERGINLSGGQKQRI 491 (1156)
Q Consensus 423 ----------~~~v~Q~~~~~~~ti~eni~~~~~-~~~~~~~~~~~~~~l~~~~~~~~~g~~t~v~~~g~~LSgGqkqRi 491 (1156)
++||||+|++|++||+|||.++.+ .+++++.++++.++++++++. |+|++|.+|++|.+||||||||+
T Consensus 406 ~~~~~~~r~~i~~v~Q~~~lf~~ti~~Ni~~~~~~~~~~~i~~al~~~~l~~~i~~-p~GldT~vge~g~~LSgGqrqRi 484 (574)
T PRK11160 406 DYSEAALRQAISVVSQRVHLFSATLRDNLLLAAPNASDEALIEVLQQVGLEKLLED-DKGLNAWLGEGGRQLSGGEQRRL 484 (574)
T ss_pred hCCHHHHHhheeEEcccchhhcccHHHHhhcCCCccCHHHHHHHHHHcCCHHHHcC-ccccCchhcCCCCCCCHHHHHHH
Confidence 799999999999999999999875 688899999999999999999 99999999999999999999999
Q ss_pred HHHHhhccCCCeeeeeCCCCCcCHHHHHHHHHHHHh-cCCCEEEEEccCCCccccCCEEEEEeCCeEEEccChHHHHhcC
Q 037346 492 QIARPLYQDADIFLLDDPFSPVDDHTGAHLFKFCWV-SSSKTVIYATHQVEFLPAADLILVIKDGKITQAGKYSDILNSG 570 (1156)
Q Consensus 492 ~lAral~~~~~illlDep~s~lD~~~~~~i~~~~~~-~~~~tvi~vtH~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~~ 570 (1156)
+||||++++|+++|||||||+||+++++.+.+.+.. .+++|+|+|||+++.++.||+|++|++|++++.|+|+|+++.+
T Consensus 485 alARall~~~~ililDE~ts~lD~~t~~~i~~~l~~~~~~~tviiitHr~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~~ 564 (574)
T PRK11160 485 GIARALLHDAPLLLLDEPTEGLDAETERQILELLAEHAQNKTVLMITHRLTGLEQFDRICVMDNGQIIEQGTHQELLAQQ 564 (574)
T ss_pred HHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHcCCCEEEEEecChhHHHhCCEEEEEeCCeEEEeCCHHHHHhcC
Confidence 999999999999999999999999999999887655 4689999999999999999999999999999999999999988
Q ss_pred cchHHHHH
Q 037346 571 TDFMELVG 578 (1156)
Q Consensus 571 ~~~~~~~~ 578 (1156)
+.|.++++
T Consensus 565 g~y~~l~~ 572 (574)
T PRK11160 565 GRYYQLKQ 572 (574)
T ss_pred cHHHHHHh
Confidence 88887754
|
|
| >COG4988 CydD ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.2e-63 Score=567.23 Aligned_cols=492 Identities=25% Similarity=0.325 Sum_probs=383.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccc-c----hhhHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHH
Q 037346 85 FIAILALLYTLATYVGPYLIDNFVQYLNGRQAFE-Y----EGYVLCLSERHW-----FFQVQQFGIRFRATLFAMIYNKG 154 (1156)
Q Consensus 85 ~~~~~~~~~~~~~~~~p~ll~~~i~~~~~~~~~~-~----~g~~l~~~~~~~-----~~~~~~~~~~~r~~l~~~i~~k~ 154 (1156)
...++..+..++...+.+++..+++.+-..+... . .+++++++.+.+ -....+.+.++|..++..+++|.
T Consensus 4 i~~ll~~l~~i~~i~qa~llA~~l~~l~~~~~~~~l~~~~~~l~~~~~lRa~l~~~~~~~~~~aa~~~~~~LR~~~l~~l 83 (559)
T COG4988 4 ISALLAVLSGIAIIAQAALLADILTKLIEGQLFQSLLPLLILLLIALVLRAFLAWLRERLGYRAAAKVRASLRQLVLDKL 83 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455666677777777777777776554332111 1 112222222222 23356788999999999999999
Q ss_pred hcCCccccCCCCHHHHHHHHHHHHHH------------------HHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 037346 155 LTLSGQAKQGNTSGEIINLIAVDAER------------------ALLIL---YKKLGLASIATLLATAIVMLANFPLGRL 213 (1156)
Q Consensus 155 l~l~~~~~~~~~~g~i~nl~s~D~~~------------------~~~ll---~~~lg~~~l~~~~~~~~~~~~~~~~~~~ 213 (1156)
.++++...++.++|+..+++..-++. .+.++ ++.-..++++-++++.++.++...++..
T Consensus 84 ~~~gp~~~~~~~~g~~atl~~egve~l~~Y~~ryLPq~~~~~ivp~~i~i~v~~~~w~aalIllit~PlIPlfMilvg~~ 163 (559)
T COG4988 84 AKLGPAFIAQKPAGSAATLALEGIEQLEPYYARYLPQMFLSAIVPLLILIAIFFFNWAAALILLITAPLIPLFMILVGLA 163 (559)
T ss_pred HhCChhhhcCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999888889999999999988877 11111 1111123333333333333344455666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH-------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 037346 214 REKFQDKFMETKDRRIKATSEILRNMRILKLQGWE-------------LKKNETAWLKKSVYTEAMISFFCWGAPTFVSV 280 (1156)
Q Consensus 214 ~~~~~~~~~~~~d~r~~~~~e~l~~i~~IK~~~~e-------------~r~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~ 280 (1156)
..+..++.++....-....-+.++|+.|+|.|+.. +|+..++.+|-.....++..++... .+.+..
T Consensus 164 a~~~s~~~~~~~~~ls~~FLD~LrGL~TLr~f~~~~~~~~~i~~~se~fR~~TM~vLriAflSs~vLeffa~l-siAlvA 242 (559)
T COG4988 164 AKDASEKQFSALARLSGHFLDRLRGLETLRAFGRTEATEERIRKDSEDFRKATMSVLRIAFLSSAVLEFFAYL-SIALVA 242 (559)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHhcChHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHH
Confidence 66777777777777778888999999999999966 4455555555444444443333222 222233
Q ss_pred HHHHHHHHhC-CCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCcccccc-CCCCCCCccE
Q 037346 281 VTFGSCILLG-IPLESGMILSALTTFKILQEPIYYLPESISMMIQAKVPLDRIASFLCLEGLQTDVLEK-MPRGNSDTAI 358 (1156)
Q Consensus 281 ~~f~~~~~~~-~~lt~~~~ft~l~~~~~l~~pl~~l~~~~~~~~~a~~s~~Ri~~fl~~~~~~~~~~~~-~~~~~~~~~i 358 (1156)
++++ .-+.+ |+++....+.++.+-.-+..|++.+...++.-+.+..+.+.+..|++.|......... .........+
T Consensus 243 v~~g-~~ll~~G~ltl~~~l~~LiLAPEff~PlR~lGs~fH~~~~g~aa~d~i~~~l~~~~~~~~~~~~~~~~~~~~~ei 321 (559)
T COG4988 243 VYIG-FRLLGEGDLTLFAGLFVLILAPEFFQPLRDLGSFFHAAAAGEAAADKLFTLLESPVATPGSGEKAEVANEPPIEI 321 (559)
T ss_pred HHHH-HHHHccCCccHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHhcCCCCCCCCccccccccCCCcee
Confidence 3333 33455 6899999999999999999999999999999999999999999999987654332221 1111223345
Q ss_pred EEeeeEEEeCCCCCCCccccceEEeeCCeEEEEEcCCCCChHHHHHHHhCCCCCCCcEEEEcC-------------eEEE
Q 037346 359 EIIDGSFSWDFSSPNPTLRNINLKVFHGMRVAVCGTVGSGKSSCLSCILGGVPKESGIIRLCG-------------TKAY 425 (1156)
Q Consensus 359 ~~~~~~f~~~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKSTll~~i~g~~~~~~G~i~~~g-------------~~~~ 425 (1156)
+.+|++|.|++ ++++++|+||++++|+.++|||+||||||||+++|+|+++|++|+|.+|| +++|
T Consensus 322 ~~~~l~~~y~~--g~~~l~~l~~t~~~g~~talvG~SGaGKSTLl~lL~G~~~~~~G~I~vng~~l~~l~~~~~~k~i~~ 399 (559)
T COG4988 322 SLENLSFRYPD--GKPALSDLNLTIKAGQLTALVGASGAGKSTLLNLLLGFLAPTQGEIRVNGIDLRDLSPEAWRKQISW 399 (559)
T ss_pred eecceEEecCC--CCcccCCceeEecCCcEEEEECCCCCCHHHHHHHHhCcCCCCCceEEECCccccccCHHHHHhHeee
Confidence 56699999985 33899999999999999999999999999999999999999999999998 3799
Q ss_pred EecCCcCCCccHHHHhhcCCC-CCHHHHHHHHHHhCCchhhhhCCCCCccccccCCCCCCHHHHHHHHHHHhhccCCCee
Q 037346 426 VAQSPWIQSGKIEENILFGKE-MDRERYERVLEACSLKKDLEVLPFGDQTIIGERGINLSGGQKQRIQIARPLYQDADIF 504 (1156)
Q Consensus 426 v~Q~~~~~~~ti~eni~~~~~-~~~~~~~~~~~~~~l~~~~~~~~~g~~t~v~~~g~~LSgGqkqRi~lAral~~~~~il 504 (1156)
|+|+|.+|++||||||.++++ .+++...++++..++.+++.. |+|.||.+||+|.+|||||+||++||||++++++++
T Consensus 400 v~Q~p~lf~gTireNi~l~~~~~s~e~i~~al~~a~l~~~v~~-p~GLdt~ige~G~~LSgGQ~QRlaLARAll~~~~l~ 478 (559)
T COG4988 400 VSQNPYLFAGTIRENILLARPDASDEEIIAALDQAGLLEFVPK-PDGLDTVIGEGGAGLSGGQAQRLALARALLSPASLL 478 (559)
T ss_pred eCCCCccccccHHHHhhccCCcCCHHHHHHHHHHhcHHHhhcC-CCcccchhccCCCCCCHHHHHHHHHHHHhcCCCCEE
Confidence 999999999999999999987 678999999999999999999 999999999999999999999999999999999999
Q ss_pred eeeCCCCCcCHHHHHHHHHHHHh-cCCCEEEEEccCCCccccCCEEEEEeCCeEEEccChHHHHhcCcchHHHHHhhh
Q 037346 505 LLDDPFSPVDDHTGAHLFKFCWV-SSSKTVIYATHQVEFLPAADLILVIKDGKITQAGKYSDILNSGTDFMELVGAHK 581 (1156)
Q Consensus 505 llDep~s~lD~~~~~~i~~~~~~-~~~~tvi~vtH~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~~~~~~~~~~~~~ 581 (1156)
||||||++||.++++.|.+.+.+ .+++|+|+||||++.+..||+|++|++|+++++|+|+++.++++.|.+++..+.
T Consensus 479 llDEpTA~LD~etE~~i~~~l~~l~~~ktvl~itHrl~~~~~~D~I~vld~G~l~~~g~~~~L~~~~~~y~~l~~~q~ 556 (559)
T COG4988 479 LLDEPTAHLDAETEQIILQALQELAKQKTVLVITHRLEDAADADRIVVLDNGRLVEQGTHEELSEKQGLYANLLKQQE 556 (559)
T ss_pred EecCCccCCCHhHHHHHHHHHHHHHhCCeEEEEEcChHHHhcCCEEEEecCCceeccCCHHHHhhcCcHHHHHHHHHh
Confidence 99999999999999999887765 578999999999999999999999999999999999999999999999987643
|
|
| >COG1132 MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-63 Score=610.91 Aligned_cols=501 Identities=27% Similarity=0.347 Sum_probs=391.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCc-ccc-hhhHH------HHHHHHHHHHHHHHHHHHHHH
Q 037346 74 VLFFSAWQEILFIAILALLYTLATYVGPYLIDNFVQYLNGRQA-FEY-EGYVL------CLSERHWFFQVQQFGIRFRAT 145 (1156)
Q Consensus 74 ~l~~~~~~~~~~~~~~~~~~~~~~~~~p~ll~~~i~~~~~~~~-~~~-~g~~l------~~~~~~~~~~~~~~~~~~r~~ 145 (1156)
.+++ ++ .++...++.++..++....|+++..+++.+..... ... ..+.+ .+......+...+.+.++...
T Consensus 9 ~~~~-~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~ 86 (567)
T COG1132 9 KYLK-YK-LLLLAILLLLLSALLSLLLPLLIGRIIDALLADLGELLELLLLLLLLALLGGVLRALQSYLGSRLGQKIVAD 86 (567)
T ss_pred HHHH-HH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444 67 88888889999999999999999999997762111 111 11111 222223334456666888999
Q ss_pred HHHHHHHHHhcCCccccCCCCHHHHHHHHHHHHHH--------------H------HHHHHHHHHH-HHHHHHHHHHHHH
Q 037346 146 LFAMIYNKGLTLSGQAKQGNTSGEIINLIAVDAER--------------A------LLILYKKLGL-ASIATLLATAIVM 204 (1156)
Q Consensus 146 l~~~i~~k~l~l~~~~~~~~~~g~i~nl~s~D~~~--------------~------~~ll~~~lg~-~~l~~~~~~~~~~ 204 (1156)
++..+|+|.++++...+++.++|++++++++|++. + ...+...+.| .+++.++..+++.
T Consensus 87 lr~~~~~~l~~~~~~~~~~~~~g~l~~~~t~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~ 166 (567)
T COG1132 87 LRRDLFEKLLRLPLSFFDKAKSGDLISRLTNDVEAVSNLVSTVLVLVFTSILLLIGSLVLLFSLSWRLALILLLILPLLA 166 (567)
T ss_pred HHHHHHHHHHhCCHHHhCcCCcchHHHHHHhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999987 0 0000011111 1111111122222
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH-HHHH----HHHHH----HHHHHHHHHHH--HH
Q 037346 205 LANFPLGRLREKFQDKFMETKDRRIKATSEILRNMRILKLQGWELKK-NETA----WLKKS----VYTEAMISFFC--WG 273 (1156)
Q Consensus 205 ~~~~~~~~~~~~~~~~~~~~~d~r~~~~~e~l~~i~~IK~~~~e~r~-~e~~----~~~~~----~~~~~~~~~~~--~~ 273 (1156)
.+...+.+...+..++..+..++..+.+.|.++|+++||.|+.|.+. ++.. ...+. ....+...... ..
T Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~ik~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 246 (567)
T COG1132 167 LVLSLLARKSRKLSRRVREALGELNARLLESLSGIRVIKAFGAEDRELKRFEEANEELRRANLRASRLEALLAPLMLLLS 246 (567)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444456777777778888899999999999999999999321 1110 01111 11111111111 11
Q ss_pred HHHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCccccccCCCCC
Q 037346 274 APTFVSVVTFGSCILLGIPLESGMILSALTTFKILQEPIYYLPESISMMIQAKVPLDRIASFLCLEGLQTDVLEKMPRGN 353 (1156)
Q Consensus 274 ~~~~~~~~~f~~~~~~~~~lt~~~~ft~l~~~~~l~~pl~~l~~~~~~~~~a~~s~~Ri~~fl~~~~~~~~~~~~~~~~~ 353 (1156)
...++.+++++.+.+..+.++.|.+.+++.++..+..|+..+...+..+..+..+.+|+.++++.++...+.... ...
T Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ri~~~l~~~~~~~~~~~~--~~~ 324 (567)
T COG1132 247 SLGTVLVLALGGFLVLSGSLTVGALAAFILYLLRLLTPILQLGEVVSLLQRASAAAERLFELLDEEPEVEDPPDP--LKD 324 (567)
T ss_pred HHHHHHHHHHHHHHHHcCCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccccCCCCC--CCC
Confidence 122344556677777788899999999999999999999999999999999999999999999985532211111 122
Q ss_pred CCccEEEeeeEEEeCCCCCCCccccceEEeeCCeEEEEEcCCCCChHHHHHHHhCCCCCCCcEEEEcCe-----------
Q 037346 354 SDTAIEIIDGSFSWDFSSPNPTLRNINLKVFHGMRVAVCGTVGSGKSSCLSCILGGVPKESGIIRLCGT----------- 422 (1156)
Q Consensus 354 ~~~~i~~~~~~f~~~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKSTll~~i~g~~~~~~G~i~~~g~----------- 422 (1156)
..+.|+++|++|+|+. ++++|+|+||++++||.+|||||||||||||+++|+|+++|++|+|.+||.
T Consensus 325 ~~~~I~f~~vsf~y~~--~~~vl~~is~~i~~Ge~vaiVG~sGsGKSTl~~LL~r~~~~~~G~I~idg~dI~~i~~~~lr 402 (567)
T COG1132 325 TIGSIEFENVSFSYPG--KKPVLKDISFSIEPGEKVAIVGPSGSGKSTLIKLLLRLYDPTSGEILIDGIDIRDISLDSLR 402 (567)
T ss_pred CCCeEEEEEEEEEcCC--CCccccCceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCeEEECCEehhhcCHHHHH
Confidence 3456999999999973 568999999999999999999999999999999999999999999999983
Q ss_pred --EEEEecCCcCCCccHHHHhhcCCC-CCHHHHHHHHHHhCCchhhhhCCCCCccccccCCCCCCHHHHHHHHHHHhhcc
Q 037346 423 --KAYVAQSPWIQSGKIEENILFGKE-MDRERYERVLEACSLKKDLEVLPFGDQTIIGERGINLSGGQKQRIQIARPLYQ 499 (1156)
Q Consensus 423 --~~~v~Q~~~~~~~ti~eni~~~~~-~~~~~~~~~~~~~~l~~~~~~~~~g~~t~v~~~g~~LSgGqkqRi~lAral~~ 499 (1156)
++||||+|++|++||+|||.+|++ .++++..++++.+++++++..+|+|++|.|||+|.+||||||||++||||+++
T Consensus 403 ~~I~~V~Qd~~LF~~TI~~NI~~g~~~at~eei~~a~k~a~~~d~I~~lp~g~dt~vge~G~~LSgGQrQrlaiARall~ 482 (567)
T COG1132 403 KRIGIVSQDPLLFSGTIRENIALGRPDATDEEIEEALKLANAHEFIANLPDGYDTIVGERGVNLSGGQRQRLAIARALLR 482 (567)
T ss_pred HhccEEcccceeecccHHHHHhcCCCCCCHHHHHHHHHHhChHHHHHhCcccccceecCCCccCCHHHHHHHHHHHHHhc
Confidence 699999999999999999999987 68899999999999999999999999999999999999999999999999999
Q ss_pred CCCeeeeeCCCCCcCHHHHHHHHHHHHh-cCCCEEEEEccCCCccccCCEEEEEeCCeEEEccChHHHHhcCcchHHHHH
Q 037346 500 DADIFLLDDPFSPVDDHTGAHLFKFCWV-SSSKTVIYATHQVEFLPAADLILVIKDGKITQAGKYSDILNSGTDFMELVG 578 (1156)
Q Consensus 500 ~~~illlDep~s~lD~~~~~~i~~~~~~-~~~~tvi~vtH~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~~~~~~~~~~ 578 (1156)
+|+|+|||||||+||+++++.+.+.+.. .++||+|+|+||++.+..||+|++|++|+|++.|+|+|+++.++.|.+++.
T Consensus 483 ~~~ILILDEaTSalD~~tE~~I~~~l~~l~~~rT~iiIaHRlsti~~aD~IiVl~~G~i~e~G~h~eLl~~~g~y~~l~~ 562 (567)
T COG1132 483 NPPILILDEATSALDTETEALIQDALKKLLKGRTTLIIAHRLSTIKNADRIIVLDNGRIVERGTHEELLAKGGLYARLYQ 562 (567)
T ss_pred CCCEEEEeccccccCHHhHHHHHHHHHHHhcCCEEEEEeccHhHHHhCCEEEEEECCEEEEecCHHHHHHcCCHHHHHHH
Confidence 9999999999999999999999887753 567899999999999999999999999999999999999999889999886
Q ss_pred hh
Q 037346 579 AH 580 (1156)
Q Consensus 579 ~~ 580 (1156)
.+
T Consensus 563 ~~ 564 (567)
T COG1132 563 AQ 564 (567)
T ss_pred Hh
Confidence 54
|
|
| >PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-64 Score=625.42 Aligned_cols=432 Identities=16% Similarity=0.240 Sum_probs=347.5
Q ss_pred HHHHHHHHHHHHHHHHhccccccccccccccchhhhhcccccccchhhhcccchHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 037346 712 AGYKTATQLFNKMHVCIFRAPMYFFDSTPSGRILNRVSENVKWADQSAADMDIPYDIGAFAFSMIQLLGIIVVMSLVAWQ 791 (1156)
Q Consensus 712 ~~~~~~~~l~~~l~~~ll~~p~~ff~~~~~G~il~R~s~d~~~~d~~~~d~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 791 (1156)
.+.+...++|.++++++++.|..||+++++|++++|++ .|+..++..+...+..++..++.+++.+++++.++|+
T Consensus 90 ~~~~~~~~lr~~~~~~ll~~~~~~~~~~~~g~l~s~~~-----~dv~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 164 (588)
T PRK11174 90 AGQHIRQQIRQQVLDKLQQLGPAWIQGKPAGSWATLVL-----EQVEDMHDFYARYLPQMALAVLVPLLILIAVFPINWA 164 (588)
T ss_pred HHHHHHHHHHHHHHHHHHhcCchhhccCCHHHHHHHHH-----hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45677889999999999999999999999999999999 7777777777667777777778888888889999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhChHHHHHHhhccchhhhhhcchHHHHHHHHHHHHHHHhhHHHHHHH
Q 037346 792 VLIVFVPVIATFIWYQQYYITSTRELSRLIGVCKAPVIQQFSETISGSTTIRSLDQELRFRDTNMKLIDEYSRPKFHIAG 871 (1156)
Q Consensus 792 l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~e~l~Gi~tIra~~~e~~~~~~~~~~~~~~~~~~~~~~~ 871 (1156)
++++++.++++.+++...+.+..++..+...+..+...+.+.|.++|+++||+|+.|+.+.+++.+..++..+.......
T Consensus 165 l~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~ 244 (588)
T PRK11174 165 AGLILLGTAPLIPLFMALVGMGAADANRRNFLALARLSGHFLDRLRGLETLRLFNRGEAETESIRSASEDFRQRTMEVLR 244 (588)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88776665555555555666666666666677788899999999999999999999999999998888877766555444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH---HH-----------------------------HcCCCccchHHHHHHHhHHHHHH
Q 037346 872 AMEWLRFCIDMLSSITFAFSLAF---LI-----------------------------SVPNGIIHPYKNLERKIISVERI 919 (1156)
Q Consensus 872 ~~~~~~~~l~~~~~~~~~~~~~~---~~-----------------------------~~~~~~~~~~~~~~~~~~s~~Ri 919 (1156)
...+......++..+...+++.+ .+ .+..........+.....+.+|+
T Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~t~G~l~~~~~~~~~~~~~~l~~~~~~pl~~l~~~~~~~~~~~~~~~ri 324 (588)
T PRK11174 245 MAFLSSAVLEFFASISIALVAVYFGFSYLGELNFGHYGTGVTLFAGFFVLILAPEFYQPLRDLGTFYHAKAQAVGAAESL 324 (588)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccchHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333332222221111110000 00 00001111124567778899999
Q ss_pred HHhhcCCCCCcccccCCCCCCCCCCCCeEEEEEEEEEEcC--------------CCCceeeCCCCCCHHHHHHHHhhccc
Q 037346 920 LQCACIPSEPALVIEATKPNNSRPSHGEVNIRHLQVRYAP--------------NLPLVLRGRTGSGKSTLIQTLFRIVE 985 (1156)
Q Consensus 920 ~~~~~~~~e~~~~~~~~~~~~~~p~~g~I~~~~Vsf~Y~~--------------~~~~vL~G~SGsGKSTL~~lL~rl~~ 985 (1156)
.++.+.+++++.. .......+..+.|+|+||+|.|.+ |+.++|+|+||||||||+++|+|+|
T Consensus 325 ~~~l~~~~~~~~~---~~~~~~~~~~~~i~~~~vsf~~~~~~~vL~~i~l~i~~G~~vaIvG~SGsGKSTL~~lL~g~~- 400 (588)
T PRK11174 325 VTFLETPLAHPQQ---GEKELASNDPVTIEAEDLEILSPDGKTLAGPLNFTLPAGQRIALVGPSGAGKTSLLNALLGFL- 400 (588)
T ss_pred HHHHcCCCcccCC---CccccCCCCCceEEEEeeEEeccCCCeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCC-
Confidence 9998876543211 000001123457899999887643 3445677999999999999999999
Q ss_pred CCCceEEEcCeeCCCCChHHHhhcCeeeccccccccccchhccCCCC-CCCHHHHHHHHHHcCCChHHHhhcCCcccc--
Q 037346 986 STAGHILIDGKDISLIGLHDLRTRLSIIPQDPTMFEGTTRSNLDPLE-EHADEQIWEALDKCQLGDEVRKKKGKLDSQ-- 1062 (1156)
Q Consensus 986 p~~G~I~idG~di~~i~~~~LR~~i~~VpQdp~LF~gTIr~Nl~~~~-~~~deei~~al~~~~l~~~i~~lp~gl~s~-- 1062 (1156)
|++|+|++||+|+++++.+++|++|+||||||+||+|||||||.+++ +++|||+++|++.|+++++|.++|+||||.
T Consensus 401 p~~G~I~i~g~~i~~~~~~~lr~~i~~v~Q~~~LF~~TI~eNI~~g~~~~~~eei~~al~~a~l~~~i~~lp~G~dT~vg 480 (588)
T PRK11174 401 PYQGSLKINGIELRELDPESWRKHLSWVGQNPQLPHGTLRDNVLLGNPDASDEQLQQALENAWVSEFLPLLPQGLDTPIG 480 (588)
T ss_pred CCCcEEEECCEecccCCHHHHHhheEEecCCCcCCCcCHHHHhhcCCCCCCHHHHHHHHHHhCHHHHHHhcccccccccc
Confidence 99999999999999999999999999999999999999999999985 588999999999999999999999999975
Q ss_pred ----------------ccccccCCCEEEEecCCcCCCHHHHHHHHHHHHHhcCCceEEEeecCcccccccCEEEEEeCcE
Q 037346 1063 ----------------GRVLLKKSKVLVLDEATASVDTATDNQIQQTLRQHFSDCTVVTIAHRITSVLDSAMVLLLNHGL 1126 (1156)
Q Consensus 1063 ----------------ARALLr~~~ILiLDEaTS~LD~~te~~I~~~l~~~~~~~TvI~IaHrl~ti~~~D~I~Vl~~G~ 1126 (1156)
||||+++|+|||||||||+||++||+.|+++|++..+++|+|+||||++++.+||+|+||++|+
T Consensus 481 e~G~~LSGGQrQRialARAll~~~~IliLDE~TSaLD~~te~~i~~~l~~~~~~~TvIiItHrl~~i~~aD~Iivl~~G~ 560 (588)
T PRK11174 481 DQAAGLSVGQAQRLALARALLQPCQLLLLDEPTASLDAHSEQLVMQALNAASRRQTTLMVTHQLEDLAQWDQIWVMQDGQ 560 (588)
T ss_pred cCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHhCCCEEEEEecChHHHHhCCEEEEEeCCe
Confidence 8999999999999999999999999999999999989999999999999999999999999999
Q ss_pred EeeecChhHHhcCCCChHHHHHHHHhc
Q 037346 1127 IKEYDSPTKLLENKSSSFAQLVAEYTS 1153 (1156)
Q Consensus 1127 IvE~G~~~eLl~~~~g~f~~l~~~~~~ 1153 (1156)
|+|.|+|+||+++ +|.|++|++.+.+
T Consensus 561 i~e~G~~~eL~~~-~~~y~~l~~~q~~ 586 (588)
T PRK11174 561 IVQQGDYAELSQA-GGLFATLLAHRQE 586 (588)
T ss_pred EeecCCHHHHHhc-chHHHHHHHHhhc
Confidence 9999999999975 7899999987764
|
|
| >TIGR01846 type_I_sec_HlyB type I secretion system ABC transporter, HlyB family | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-62 Score=619.24 Aligned_cols=508 Identities=19% Similarity=0.211 Sum_probs=396.1
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcccc-----hhhHH-----HHHHHHHHHHHHHH
Q 037346 69 LRLAKVLFFSAWQEILFIAILALLYTLATYVGPYLIDNFVQYLNGRQAFEY-----EGYVL-----CLSERHWFFQVQQF 138 (1156)
Q Consensus 69 ~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~p~ll~~~i~~~~~~~~~~~-----~g~~l-----~~~~~~~~~~~~~~ 138 (1156)
.+.++..++.+++.+...++..++..++.++.|++++.++|.+........ .++++ .++.....+...++
T Consensus 127 ~~~~~~~~~~~~~~~~~~~~~s~~~~ll~l~~p~~~~~iid~v~~~~~~~~l~~l~~~~~~~~~~~~~~~~l~~~~~~~~ 206 (694)
T TIGR01846 127 FSWFIPAIIRYRKQFREVLLISLALQLFALVTPLLFQVVIDKVLVHRGLSTLSVLALAMLAVAIFEPALGGLRTYLFAHL 206 (694)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445556677788888888999999999999999999999997753322111 11111 11222223345677
Q ss_pred HHHHHHHHHHHHHHHHhcCCccccCCCCHHHHHHHHHHHHHH---------------------HHHHHHHHHHHHHHHHH
Q 037346 139 GIRFRATLFAMIYNKGLTLSGQAKQGNTSGEIINLIAVDAER---------------------ALLILYKKLGLASIATL 197 (1156)
Q Consensus 139 ~~~~r~~l~~~i~~k~l~l~~~~~~~~~~g~i~nl~s~D~~~---------------------~~~ll~~~lg~~~l~~~ 197 (1156)
+.++...++..+|+|.++++...+++.++|++++++ +|++. .++++++.-++.+++.+
T Consensus 207 ~~~~~~~l~~~~~~~l~~l~~~~f~~~~~g~~~~rl-~d~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~li~l 285 (694)
T TIGR01846 207 TSRIDVELGARLYRHLLGLPLGYFESRRVGDTVARV-RELEQIRNFLTGSALTVVLDLLFVVVFLAVMFFYSPTLTGVVI 285 (694)
T ss_pred HHHHHHHHHHHHHHHHHcCCHHHcCCCCHHHHHHHh-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 888999999999999999999999999999999998 58876 00011111111112222
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH------HH---HHHHHHHHHHHHHHH
Q 037346 198 LATAIVMLANFPLGRLREKFQDKFMETKDRRIKATSEILRNMRILKLQGWELKK------NE---TAWLKKSVYTEAMIS 268 (1156)
Q Consensus 198 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~r~~~~~e~l~~i~~IK~~~~e~r~------~e---~~~~~~~~~~~~~~~ 268 (1156)
+++++.+.+...+.+..++..++.++..+++.+.+.|.++|+++||.++.|.+. .- .+...+.........
T Consensus 286 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 365 (694)
T TIGR01846 286 GSLVCYALLSVFVGPILRKRVEDKFERSAAATSFLVESVTGIETIKATATEPQFQNRWDRQLAAYVAASFRVTNLGNIAG 365 (694)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHcccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 222333333344555666667777778888899999999999999999987111 00 011111111111111
Q ss_pred HHHHHH--HHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCcccc
Q 037346 269 FFCWGA--PTFVSVVTFGSCILLGIPLESGMILSALTTFKILQEPIYYLPESISMMIQAKVPLDRIASFLCLEGLQTDVL 346 (1156)
Q Consensus 269 ~~~~~~--~~~~~~~~f~~~~~~~~~lt~~~~ft~l~~~~~l~~pl~~l~~~~~~~~~a~~s~~Ri~~fl~~~~~~~~~~ 346 (1156)
...... ...+.++++|++.+..+.+|.|.++++..+...+..|+..+...+..+.+++++++|+.++++.++.....
T Consensus 366 ~~~~~i~~~~~~~il~~g~~lv~~g~it~G~lia~~~l~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~l~~~~e~~~~- 444 (694)
T TIGR01846 366 QAIELIQKLTFAILLWFGAHLVIGGALSPGQLVAFNMLAGRVTQPVLRLAQLWQDFQQTGIALERLGDILNSPTEPRSA- 444 (694)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCccCC-
Confidence 111111 12234567888888889999999999999999999999999999999999999999999999876433211
Q ss_pred ccCCCCCCCccEEEeeeEEEeCCCCCCCccccceEEeeCCeEEEEEcCCCCChHHHHHHHhCCCCCCCcEEEEcCe----
Q 037346 347 EKMPRGNSDTAIEIIDGSFSWDFSSPNPTLRNINLKVFHGMRVAVCGTVGSGKSSCLSCILGGVPKESGIIRLCGT---- 422 (1156)
Q Consensus 347 ~~~~~~~~~~~i~~~~~~f~~~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKSTll~~i~g~~~~~~G~i~~~g~---- 422 (1156)
...+.....+.|+++|++|+|+.+ ++++|+|+||+|++||.++|+|+||||||||+++|+|+++|++|+|.+||.
T Consensus 445 ~~~~~~~~~~~i~~~~vsf~y~~~-~~~il~~i~l~i~~G~~vaivG~sGsGKSTL~~ll~g~~~p~~G~I~idg~~i~~ 523 (694)
T TIGR01846 445 GLAALPELRGAITFENIRFRYAPD-SPEVLSNLNLDIKPGEFIGIVGPSGSGKSTLTKLLQRLYTPQHGQVLVDGVDLAI 523 (694)
T ss_pred CCCCCCCCCCeEEEEEEEEEcCCC-CccccccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEehhh
Confidence 111111224569999999999743 357999999999999999999999999999999999999999999999984
Q ss_pred ---------EEEEecCCcCCCccHHHHhhcCCC-CCHHHHHHHHHHhCCchhhhhCCCCCccccccCCCCCCHHHHHHHH
Q 037346 423 ---------KAYVAQSPWIQSGKIEENILFGKE-MDRERYERVLEACSLKKDLEVLPFGDQTIIGERGINLSGGQKQRIQ 492 (1156)
Q Consensus 423 ---------~~~v~Q~~~~~~~ti~eni~~~~~-~~~~~~~~~~~~~~l~~~~~~~~~g~~t~v~~~g~~LSgGqkqRi~ 492 (1156)
++||||+|++|++||+|||.++.+ .++++..++++.+++.+++..+|.|++|.+|++|.+||||||||++
T Consensus 524 ~~~~~~r~~i~~v~q~~~lf~~ti~eNi~~~~~~~~~~~i~~a~~~~~l~~~i~~lp~gl~t~i~~~g~~LSgGq~qri~ 603 (694)
T TIGR01846 524 ADPAWLRRQMGVVLQENVLFSRSIRDNIALCNPGAPFEHVIHAAKLAGAHDFISELPQGYNTEVGEKGANLSGGQRQRIA 603 (694)
T ss_pred CCHHHHHHhCeEEccCCeehhhhHHHHHhcCCCCCCHHHHHHHHHHcChHHHHHhCcCccCcEecCCCCCCCHHHHHHHH
Confidence 699999999999999999999864 6788999999999999999999999999999999999999999999
Q ss_pred HHHhhccCCCeeeeeCCCCCcCHHHHHHHHHHHHh-cCCCEEEEEccCCCccccCCEEEEEeCCeEEEccChHHHHhcCc
Q 037346 493 IARPLYQDADIFLLDDPFSPVDDHTGAHLFKFCWV-SSSKTVIYATHQVEFLPAADLILVIKDGKITQAGKYSDILNSGT 571 (1156)
Q Consensus 493 lAral~~~~~illlDep~s~lD~~~~~~i~~~~~~-~~~~tvi~vtH~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~~~ 571 (1156)
||||++++|+++|||||||+||+.+++.+.+.+.. .+++|+|+|||+++.++.||+|++|++|++++.|+++++++.++
T Consensus 604 lARall~~~~ililDEpts~LD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~~d~ii~l~~G~i~~~g~~~~l~~~~~ 683 (694)
T TIGR01846 604 IARALVGNPRILIFDEATSALDYESEALIMRNMREICRGRTVIIIAHRLSTVRACDRIIVLEKGQIAESGRHEELLALQG 683 (694)
T ss_pred HHHHHHhCCCEEEEECCCcCCCHHHHHHHHHHHHHHhCCCEEEEEeCChHHHHhCCEEEEEeCCEEEEeCCHHHHHHcCC
Confidence 99999999999999999999999999999887755 46899999999999999999999999999999999999998888
Q ss_pred chHHHHHh
Q 037346 572 DFMELVGA 579 (1156)
Q Consensus 572 ~~~~~~~~ 579 (1156)
.|.+++..
T Consensus 684 ~y~~l~~~ 691 (694)
T TIGR01846 684 LYARLWQQ 691 (694)
T ss_pred hHHHHHHh
Confidence 88887653
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. |
| >TIGR02204 MsbA_rel ABC transporter, permease/ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.9e-63 Score=610.09 Aligned_cols=509 Identities=23% Similarity=0.293 Sum_probs=392.8
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcccc----hh-hHH-----HHHHHHHHHHHHHHH
Q 037346 70 RLAKVLFFSAWQEILFIAILALLYTLATYVGPYLIDNFVQYLNGRQAFEY----EG-YVL-----CLSERHWFFQVQQFG 139 (1156)
Q Consensus 70 ~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~p~ll~~~i~~~~~~~~~~~----~g-~~l-----~~~~~~~~~~~~~~~ 139 (1156)
+.++.+++.+++.+++.+++.++..++.++.|++++.++|.+........ .. +++ .+......+...+++
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iid~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (576)
T TIGR02204 7 AALWPFVRPYRGRVLAALVALLITAAATLSLPYAVRLMIDHGFSKDSSGLLNRYFAFLLVVALVLALGTAARFYLVTWLG 86 (576)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455667777888888889999999999999999999997432221111 11 111 112222334556788
Q ss_pred HHHHHHHHHHHHHHHhcCCccccCCCCHHHHHHHHHHHHHH---------------------HHHHHHHHHHHHHHHHHH
Q 037346 140 IRFRATLFAMIYNKGLTLSGQAKQGNTSGEIINLIAVDAER---------------------ALLILYKKLGLASIATLL 198 (1156)
Q Consensus 140 ~~~r~~l~~~i~~k~l~l~~~~~~~~~~g~i~nl~s~D~~~---------------------~~~ll~~~lg~~~l~~~~ 198 (1156)
.++...++..+|+|.++.+...+++.+.|++++++++|++. .+.++++.-.+.+++.++
T Consensus 87 ~~~~~~lr~~l~~~l~~~~~~~~~~~~~g~~~~~~~~d~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~ 166 (576)
T TIGR02204 87 ERVVADIRRAVFAHLISLSPSFFDKNRSGEVVSRLTTDTTLLQSVIGSSLSMALRNALMCIGGLIMMFITSPKLTSLVLL 166 (576)
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHccCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 89999999999999999998888889999999999999987 000111111111111111
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH------HH---HHHHHHHHHHHHHHHHH
Q 037346 199 ATAIVMLANFPLGRLREKFQDKFMETKDRRIKATSEILRNMRILKLQGWELK------KN---ETAWLKKSVYTEAMISF 269 (1156)
Q Consensus 199 ~~~~~~~~~~~~~~~~~~~~~~~~~~~d~r~~~~~e~l~~i~~IK~~~~e~r------~~---e~~~~~~~~~~~~~~~~ 269 (1156)
.+++.+.+...+.+...+..++.++..++..+.+.|.++|+++||.+++|.+ +. ..+...+..........
T Consensus 167 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 246 (576)
T TIGR02204 167 AVPLVLLPILLFGRRVRKLSRESQDRIADAGSYAGETLGAIRTVQAFGHEDAERSRFGGAVEKAYEAARQRIRTRALLTA 246 (576)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHhccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2222223334456667777788888888889999999999999999999811 10 01111111111111111
Q ss_pred HHH--HHHHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCcccc-
Q 037346 270 FCW--GAPTFVSVVTFGSCILLGIPLESGMILSALTTFKILQEPIYYLPESISMMIQAKVPLDRIASFLCLEGLQTDVL- 346 (1156)
Q Consensus 270 ~~~--~~~~~~~~~~f~~~~~~~~~lt~~~~ft~l~~~~~l~~pl~~l~~~~~~~~~a~~s~~Ri~~fl~~~~~~~~~~- 346 (1156)
+.. .....+..+.++++.+..+.+|+|.++++..+...+..|+..++..+..+.+++++++||.++++.++..+...
T Consensus 247 ~~~~~~~~~~~~~~~~g~~~v~~g~lt~g~~~~~~~~~~~~~~pl~~~~~~~~~~~~~~~~~~ri~~~l~~~~~~~~~~~ 326 (576)
T TIGR02204 247 IVIVLVFGAIVGVLWVGAHDVIAGKMSAGTLGQFVFYAVMVAGSIGTLSEVWGELQRAAGAAERLIELLQAEPDIKAPAH 326 (576)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcCCCCCC
Confidence 111 11223344557778788889999999999999999999999999999999999999999999998654311110
Q ss_pred ccCCCCCCCccEEEeeeEEEeCCCCCCCccccceEEeeCCeEEEEEcCCCCChHHHHHHHhCCCCCCCcEEEEcC-----
Q 037346 347 EKMPRGNSDTAIEIIDGSFSWDFSSPNPTLRNINLKVFHGMRVAVCGTVGSGKSSCLSCILGGVPKESGIIRLCG----- 421 (1156)
Q Consensus 347 ~~~~~~~~~~~i~~~~~~f~~~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKSTll~~i~g~~~~~~G~i~~~g----- 421 (1156)
......+..+.|+++|++|+|+..+++++|+|+||++++||.++|+|+||||||||+++|+|+++|++|+|.+||
T Consensus 327 ~~~~~~~~~~~i~~~~v~f~y~~~~~~~iL~~inl~i~~Ge~i~IvG~sGsGKSTLlklL~gl~~p~~G~I~i~g~~i~~ 406 (576)
T TIGR02204 327 PKTLPVPLRGEIEFEQVNFAYPARPDQPALDGLNLTVRPGETVALVGPSGAGKSTLFQLLLRFYDPQSGRILLDGVDLRQ 406 (576)
T ss_pred CccCCcCCCceEEEEEEEEECCCCCCCccccceeEEecCCCEEEEECCCCCCHHHHHHHHHhccCCCCCEEEECCEEHHh
Confidence 001111123469999999999853336899999999999999999999999999999999999999999999998
Q ss_pred --------eEEEEecCCcCCCccHHHHhhcCCC-CCHHHHHHHHHHhCCchhhhhCCCCCccccccCCCCCCHHHHHHHH
Q 037346 422 --------TKAYVAQSPWIQSGKIEENILFGKE-MDRERYERVLEACSLKKDLEVLPFGDQTIIGERGINLSGGQKQRIQ 492 (1156)
Q Consensus 422 --------~~~~v~Q~~~~~~~ti~eni~~~~~-~~~~~~~~~~~~~~l~~~~~~~~~g~~t~v~~~g~~LSgGqkqRi~ 492 (1156)
.++|+||+|++|++||+|||.++.+ .++++..++++.+++.++++.+|+|++|.+|++|.+||||||||++
T Consensus 407 ~~~~~~~~~i~~~~Q~~~lf~~Ti~~Ni~~~~~~~~~~~~~~~l~~~~l~~~i~~l~~gl~t~i~~~g~~LSgGq~Qrl~ 486 (576)
T TIGR02204 407 LDPAELRARMALVPQDPVLFAASVMENIRYGRPDATDEEVEAAARAAHAHEFISALPEGYDTYLGERGVTLSGGQRQRIA 486 (576)
T ss_pred cCHHHHHHhceEEccCCccccccHHHHHhcCCCCCCHHHHHHHHHHcCcHHHHHhCCCCCCceeCCCCCcCCHHHHHHHH
Confidence 4799999999999999999999875 5788899999999999999999999999999999999999999999
Q ss_pred HHHhhccCCCeeeeeCCCCCcCHHHHHHHHHHHHh-cCCCEEEEEccCCCccccCCEEEEEeCCeEEEccChHHHHhcCc
Q 037346 493 IARPLYQDADIFLLDDPFSPVDDHTGAHLFKFCWV-SSSKTVIYATHQVEFLPAADLILVIKDGKITQAGKYSDILNSGT 571 (1156)
Q Consensus 493 lAral~~~~~illlDep~s~lD~~~~~~i~~~~~~-~~~~tvi~vtH~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~~~ 571 (1156)
||||++++|+++|||||||+||+++++.+++.+.. .+++|+|+|||+++.++.||+|++|++|++++.|+++++.+.++
T Consensus 487 laRal~~~~~ililDEpts~lD~~~~~~i~~~l~~~~~~~t~IiitH~~~~~~~~d~vi~l~~g~~~~~g~~~~l~~~~~ 566 (576)
T TIGR02204 487 IARAILKDAPILLLDEATSALDAESEQLVQQALETLMKGRTTLIIAHRLATVLKADRIVVMDQGRIVAQGTHAELIAKGG 566 (576)
T ss_pred HHHHHHhCCCeEEEeCcccccCHHHHHHHHHHHHHHhCCCEEEEEecchHHHHhCCEEEEEECCEEEeeecHHHHHHcCC
Confidence 99999999999999999999999999988877655 46899999999999999999999999999999999999998877
Q ss_pred chHHHHH
Q 037346 572 DFMELVG 578 (1156)
Q Consensus 572 ~~~~~~~ 578 (1156)
.|.++..
T Consensus 567 ~~~~l~~ 573 (576)
T TIGR02204 567 LYARLAR 573 (576)
T ss_pred hHHHHHh
Confidence 7777653
|
This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins. |
| >KOG0056 consensus Heavy metal exporter HMT1, ABC superfamily [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.7e-65 Score=553.87 Aligned_cols=430 Identities=18% Similarity=0.338 Sum_probs=336.3
Q ss_pred HHHHHHHHHHHHHHhccccccccccccccchhhhhcccccccchhhhcccchHHHHHHHHHHHHHHHHHHH-HHHHHHHH
Q 037346 714 YKTATQLFNKMHVCIFRAPMYFFDSTPSGRILNRVSENVKWADQSAADMDIPYDIGAFAFSMIQLLGIIVV-MSLVAWQV 792 (1156)
Q Consensus 714 ~~~~~~l~~~l~~~ll~~p~~ff~~~~~G~il~R~s~d~~~~d~~~~d~~l~~~~~~~~~~~~~~~~~~~~-~~~~~~~l 792 (1156)
....+.+--++|+|+..+++.|.-++.+|+++.-+. .-...+. .+.....++...++.+.+.++. ....+||+
T Consensus 288 QyttR~ie~~lfrHlh~LSlrwHL~rrtGeVLrvmd-----rGtssvt-ll~yvVF~i~PtllDl~va~vYF~~~Fn~wF 361 (790)
T KOG0056|consen 288 QYTTREIETELFRHLHNLSLRWHLNRRTGEVLRVMD-----RGTSSVT-LLEYVVFQIGPTLLDLGVAMVYFFIKFNIWF 361 (790)
T ss_pred HhHHHHHHHHHHHHHHhhceeeeecccccceeehhc-----cCcchhh-HHHHHHhhcccHHHHhhhhhhhhhhhHhHHH
Confidence 456778888999999999999999999999988876 3333322 3333333344444444433333 34468888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhChHHHHHHhhccchhhhhhcchHHHHHHHHHHHHHHHhhHHHHHHHH
Q 037346 793 LIVFVPVIATFIWYQQYYITSTRELSRLIGVCKAPVIQQFSETISGSTTIRSLDQELRFRDTNMKLIDEYSRPKFHIAGA 872 (1156)
Q Consensus 793 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~e~l~Gi~tIra~~~e~~~~~~~~~~~~~~~~~~~~~~~~ 872 (1156)
.++++....++..+.........+.+|....+-....+.-.+++-+.+|+|-|++|++..++|.+.+.++++..++....
T Consensus 362 gLIVfl~m~lY~~~Ti~iTeWRTk~rR~Mn~~~nesrAr~vDsllNFETVKyy~Ae~yEverYreAil~Yqk~E~ks~~s 441 (790)
T KOG0056|consen 362 GLIVFLMMLLYCYVTIKITEWRTKARRKMNNSWNESRARQVDSLLNFETVKYYNAEDYEVERYREAILKYQKQEWKSLAS 441 (790)
T ss_pred HHHHHHHHHHHhheeeeeehhhHHHHHHhhhhhhhhhhhhhhhhhcchhhhccCchhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 88877777766654322222222233333333334456678999999999999999999999999999999988887766
Q ss_pred HHHHHHHHHHHHHHHHHHHHH---------------------HHHH--cCCCccc-hHHHHHHHhHHHHHHHHhhcCCCC
Q 037346 873 MEWLRFCIDMLSSITFAFSLA---------------------FLIS--VPNGIIH-PYKNLERKIISVERILQCACIPSE 928 (1156)
Q Consensus 873 ~~~~~~~l~~~~~~~~~~~~~---------------------~~~~--~~~~~~~-~~~~~~~~~~s~~Ri~~~~~~~~e 928 (1156)
...+...-+.+..+....... +++. .+-+.++ -+..++++....|+++++++.++|
T Consensus 442 LnfLN~~Qn~Ii~lgll~gsll~aY~Vt~q~ltVGDfVlf~TYliqLy~PLN~FGT~YR~iQ~nfiDmEnmfdllkee~e 521 (790)
T KOG0056|consen 442 LNFLNIVQNGIIGLGLLAGSLLCAYRVTEQTLTVGDFVLFLTYLIQLYMPLNFFGTYYRSIQKNFIDMENMFDLLKEEPE 521 (790)
T ss_pred HHHHHHHhhhhhhhHHhhhhheeeeeeeeccccccceehHHHHHHHHhCchHHHHHHHHHHHHhhhhHHHHHHHhhcCch
Confidence 666554443333222211111 1111 1111111 126788899999999998875554
Q ss_pred CcccccCCCCCCCCCCCCeEEEEEEEEEEcCCCC--------------ceeeCCCCCCHHHHHHHHhhcccCCCceEEEc
Q 037346 929 PALVIEATKPNNSRPSHGEVNIRHLQVRYAPNLP--------------LVLRGRTGSGKSTLIQTLFRIVESTAGHILID 994 (1156)
Q Consensus 929 ~~~~~~~~~~~~~~p~~g~I~~~~Vsf~Y~~~~~--------------~vL~G~SGsGKSTL~~lL~rl~~p~~G~I~id 994 (1156)
.. +.+..++-.-.+|.|+|+||+|.|+|+.| ++|+||||+||||++++|+||||.++|.|.||
T Consensus 522 Vv---d~P~a~pl~~~~G~i~fsnvtF~Y~p~k~vl~disF~v~pGktvAlVG~SGaGKSTimRlLfRffdv~sGsI~iD 598 (790)
T KOG0056|consen 522 VV---DLPGAPPLKVTQGKIEFSNVTFAYDPGKPVLSDISFTVQPGKTVALVGPSGAGKSTIMRLLFRFFDVNSGSITID 598 (790)
T ss_pred hh---cCCCCCCccccCCeEEEEEeEEecCCCCceeecceEEecCCcEEEEECCCCCchhHHHHHHHHHhhccCceEEEc
Confidence 32 22222222335799999999999988776 35779999999999999999999999999999
Q ss_pred CeeCCCCChHHHhhcCeeeccccccccccchhccCCCCC-CCHHHHHHHHHHcCCChHHHhhcCCcccc-----------
Q 037346 995 GKDISLIGLHDLRTRLSIIPQDPTMFEGTTRSNLDPLEE-HADEQIWEALDKCQLGDEVRKKKGKLDSQ----------- 1062 (1156)
Q Consensus 995 G~di~~i~~~~LR~~i~~VpQdp~LF~gTIr~Nl~~~~~-~~deei~~al~~~~l~~~i~~lp~gl~s~----------- 1062 (1156)
|+||+++..++||++||+||||.+||++||..||.++++ ++|||+.+|++.|++||-|.++|+||+|.
T Consensus 599 gqdIrnvt~~SLRs~IGVVPQDtvLFNdTI~yNIryak~~AsneevyaAAkAA~IHdrIl~fPegY~t~VGERGLkLSGG 678 (790)
T KOG0056|consen 599 GQDIRNVTQSSLRSSIGVVPQDTVLFNDTILYNIRYAKPSASNEEVYAAAKAAQIHDRILQFPEGYNTRVGERGLKLSGG 678 (790)
T ss_pred CchHHHHHHHHHHHhcCcccCcceeecceeeeheeecCCCCChHHHHHHHHHhhHHHHHhcCchhhhhhhhhcccccCCc
Confidence 999999999999999999999999999999999999875 56999999999999999999999999976
Q ss_pred -------ccccccCCCEEEEecCCcCCCHHHHHHHHHHHHHhcCCceEEEeecCcccccccCEEEEEeCcEEeeecChhH
Q 037346 1063 -------GRVLLKKSKVLVLDEATASVDTATDNQIQQTLRQHFSDCTVVTIAHRITSVLDSAMVLLLNHGLIKEYDSPTK 1135 (1156)
Q Consensus 1063 -------ARALLr~~~ILiLDEaTS~LD~~te~~I~~~l~~~~~~~TvI~IaHrl~ti~~~D~I~Vl~~G~IvE~G~~~e 1135 (1156)
||++||+|.|++||||||+||..||+.||.++.+..+++|.|+|||||+||.+||.|+|+++|+|+|.|+|+|
T Consensus 679 EKQRVAiARtiLK~P~iIlLDEATSALDT~tER~IQaaL~rlca~RTtIVvAHRLSTivnAD~ILvi~~G~IvErG~Hee 758 (790)
T KOG0056|consen 679 EKQRVAIARTILKAPSIILLDEATSALDTNTERAIQAALARLCANRTTIVVAHRLSTIVNADLILVISNGRIVERGRHEE 758 (790)
T ss_pred chhhHHHHHHHhcCCcEEEEcchhhhcCCccHHHHHHHHHHHhcCCceEEEeeeehheecccEEEEEeCCeEeecCcHHH
Confidence 8999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhcCCCChHHHHHHHHh
Q 037346 1136 LLENKSSSFAQLVAEYT 1152 (1156)
Q Consensus 1136 Ll~~~~g~f~~l~~~~~ 1152 (1156)
|+++++|.|+.||+.+|
T Consensus 759 Ll~rdgG~Ya~MWq~qq 775 (790)
T KOG0056|consen 759 LLKRDGGAYADMWQAQQ 775 (790)
T ss_pred HHhccCCcHHHHHHHHH
Confidence 99988999999997655
|
|
| >TIGR02868 CydC thiol reductant ABC exporter, CydC subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-62 Score=601.09 Aligned_cols=466 Identities=19% Similarity=0.202 Sum_probs=350.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcc-cch-hhH----HH----HHHHHHHHHHHHHHHHH
Q 037346 73 KVLFFSAWQEILFIAILALLYTLATYVGPYLIDNFVQYLNGRQAF-EYE-GYV----LC----LSERHWFFQVQQFGIRF 142 (1156)
Q Consensus 73 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~p~ll~~~i~~~~~~~~~-~~~-g~~----l~----~~~~~~~~~~~~~~~~~ 142 (1156)
+.+.+.+++.++..+++.++..++..+.|++++.++|........ ... .++ +. +......+...+.+.++
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (529)
T TIGR02868 5 LPLLQPRTRRLVVAILLGALALGSAVALLGVSAWLISRAAEMPPVLYLSVAAVAVRAFGIGRAVFRYLERLVGHDAALRS 84 (529)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345566777788888889999999999999999999976532211 111 110 11 11111223345677888
Q ss_pred HHHHHHHHHHHHhcCCccccCCCCHHHHHHHHHHHHHH-------H--------------HHHHHHHHHHHHHHHHHHHH
Q 037346 143 RATLFAMIYNKGLTLSGQAKQGNTSGEIINLIAVDAER-------A--------------LLILYKKLGLASIATLLATA 201 (1156)
Q Consensus 143 r~~l~~~i~~k~l~l~~~~~~~~~~g~i~nl~s~D~~~-------~--------------~~ll~~~lg~~~l~~~~~~~ 201 (1156)
...++..+|+|.++++...+++.++|++++++++|++. . ++++++.-+..+++.++.++
T Consensus 85 ~~~lr~~~~~~ll~~~~~~~~~~~~g~~~~~l~~d~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~l~~l~~~~ 164 (529)
T TIGR02868 85 LGRLRVRVYDRLARLALAGRRRFQTGDLLGRLGADVDALQDLYVRVIVPLVVALVVGSAAVAAIALLSVPAALVLAAGLL 164 (529)
T ss_pred HHHHHHHHHHHhhccCccccccCChhhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 89999999999999999999999999999999999988 0 00001000111111111111
Q ss_pred HHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH------HHHHHHH---HHHHHHHHHHHHHH
Q 037346 202 IVMLANFPL-GRLREKFQDKFMETKDRRIKATSEILRNMRILKLQGWELK------KNETAWL---KKSVYTEAMISFFC 271 (1156)
Q Consensus 202 ~~~~~~~~~-~~~~~~~~~~~~~~~d~r~~~~~e~l~~i~~IK~~~~e~r------~~e~~~~---~~~~~~~~~~~~~~ 271 (1156)
++.++...+ .+......++..+..++..+.+.|.++|+++||.|++|.+ +...+.. .+.....+....+.
T Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~g~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 244 (529)
T TIGR02868 165 LAGFVAPLVSLRAARAAEVALARLRSQLYQQLTDALDGAADLVAYGALDPALAQVEAADRELLAAERRAARATGLGAAAQ 244 (529)
T ss_pred HHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHhccHHHHHHcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 111222122 2223444556667778889999999999999999999911 1100111 11111111111111
Q ss_pred HHH--HHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCcccccc-
Q 037346 272 WGA--PTFVSVVTFGSCILLGIPLESGMILSALTTFKILQEPIYYLPESISMMIQAKVPLDRIASFLCLEGLQTDVLEK- 348 (1156)
Q Consensus 272 ~~~--~~~~~~~~f~~~~~~~~~lt~~~~ft~l~~~~~l~~pl~~l~~~~~~~~~a~~s~~Ri~~fl~~~~~~~~~~~~- 348 (1156)
... ...+..++++.+.+.++.+++|.+.+++.+...+..|+..++..+..+.+++++.+|+.++++.++..+.....
T Consensus 245 ~~~~~~~~~~~~~~g~~~~~~g~~t~g~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ri~~~l~~~~~~~~~~~~~ 324 (529)
T TIGR02868 245 LLAAGLAVLGALWAGGPAVADGTLAPATLAVLVLLPLAAFEAFAPLPAAAQALTRVRAAAERIEEVTGAKGPRPEGVVPA 324 (529)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcCCCCCCC
Confidence 111 12233456777777888999999999999999999999999999999999999999999999876432111000
Q ss_pred -CCCCCCCccEEEeeeEEEeCCCCCCCccccceEEeeCCeEEEEEcCCCCChHHHHHHHhCCCCCCCcEEEEcC------
Q 037346 349 -MPRGNSDTAIEIIDGSFSWDFSSPNPTLRNINLKVFHGMRVAVCGTVGSGKSSCLSCILGGVPKESGIIRLCG------ 421 (1156)
Q Consensus 349 -~~~~~~~~~i~~~~~~f~~~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKSTll~~i~g~~~~~~G~i~~~g------ 421 (1156)
.+.....+.|+++|++|+|+. ++++|+|+||+|++||+++||||||||||||+++|+|+++|++|+|.+||
T Consensus 325 ~~~~~~~~~~I~~~~vsf~Y~~--~~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~i~g~~i~~~ 402 (529)
T TIGR02868 325 AGALGLGKPTLELRDLSFGYPG--SPPVLDGVSLDLPPGERVAILGPSGSGKSTLLMLLTGLLDPLQGEVTLDGVSVSSL 402 (529)
T ss_pred CcccCCCCceEEEEEEEEecCC--CCceeecceEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEhhhH
Confidence 001112346999999999974 34699999999999999999999999999999999999999999999999
Q ss_pred ------eEEEEecCCcCCCccHHHHhhcCCC-CCHHHHHHHHHHhCCchhhhhCCCCCccccccCCCCCCHHHHHHHHHH
Q 037346 422 ------TKAYVAQSPWIQSGKIEENILFGKE-MDRERYERVLEACSLKKDLEVLPFGDQTIIGERGINLSGGQKQRIQIA 494 (1156)
Q Consensus 422 ------~~~~v~Q~~~~~~~ti~eni~~~~~-~~~~~~~~~~~~~~l~~~~~~~~~g~~t~v~~~g~~LSgGqkqRi~lA 494 (1156)
+++||||+|++|++||+|||.+|.+ .++++++++++.+++++++..+|+|++|.+|++|.+||||||||++||
T Consensus 403 ~~~lr~~i~~V~Q~~~lF~~TI~eNI~~g~~~~~~e~i~~al~~a~l~~~i~~lp~GldT~ige~G~~LSGGQrQRiaiA 482 (529)
T TIGR02868 403 QDELRRRISVFAQDAHLFDTTVRDNLRLGRPDATDEELWAALERVGLADWLRSLPDGLDTVLGEGGARLSGGERQRLALA 482 (529)
T ss_pred HHHHHhheEEEccCcccccccHHHHHhccCCCCCHHHHHHHHHHcCCHHHHHhCcccccchhccccCcCCHHHHHHHHHH
Confidence 6899999999999999999999865 688999999999999999999999999999999999999999999999
Q ss_pred HhhccCCCeeeeeCCCCCcCHHHHHHHHHHHHh-cCCCEEEEEccCC
Q 037346 495 RPLYQDADIFLLDDPFSPVDDHTGAHLFKFCWV-SSSKTVIYATHQV 540 (1156)
Q Consensus 495 ral~~~~~illlDep~s~lD~~~~~~i~~~~~~-~~~~tvi~vtH~~ 540 (1156)
||++++|+|+|||||||+||+++++.+.+.+.. .+++|+|+||||+
T Consensus 483 Rall~~~~iliLDE~TSaLD~~te~~I~~~l~~~~~~~TvIiItHrl 529 (529)
T TIGR02868 483 RALLADAPILLLDEPTEHLDAGTESELLEDLLAALSGKTVVVITHHL 529 (529)
T ss_pred HHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHhcCCCEEEEEecCC
Confidence 999999999999999999999999999888765 4789999999985
|
The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex. |
| >TIGR01192 chvA glucan exporter ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.5e-62 Score=598.61 Aligned_cols=504 Identities=17% Similarity=0.222 Sum_probs=386.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcccc-hhh-HH-----HHHHHHHHHHHHHHHHHHHHHH
Q 037346 74 VLFFSAWQEILFIAILALLYTLATYVGPYLIDNFVQYLNGRQAFEY-EGY-VL-----CLSERHWFFQVQQFGIRFRATL 146 (1156)
Q Consensus 74 ~l~~~~~~~~~~~~~~~~~~~~~~~~~p~ll~~~i~~~~~~~~~~~-~g~-~l-----~~~~~~~~~~~~~~~~~~r~~l 146 (1156)
.+++.+++.++..+++.++..++..+.|++++.++|.+........ ..+ ++ .+......+...++..+++..+
T Consensus 12 ~~l~~~k~~~~~~~~~~~~~~~~~~~~p~~~~~iid~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 91 (585)
T TIGR01192 12 SYLNVHKNRVLLIVIANITLAAITIAEPILFGRIIDAISSKSDVLPTLALWAGFGVFNTIAYVLVAREADRLAHGRRATL 91 (585)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567788888899999999999999999999999997754322111 111 11 1111112233456777888888
Q ss_pred HHHHHHHHhcCCccccCCCCHHHHHHHHHHHHHHH---------------H-------HHHHHHHHHHHHHHHHHHHHHH
Q 037346 147 FAMIYNKGLTLSGQAKQGNTSGEIINLIAVDAERA---------------L-------LILYKKLGLASIATLLATAIVM 204 (1156)
Q Consensus 147 ~~~i~~k~l~l~~~~~~~~~~g~i~nl~s~D~~~~---------------~-------~ll~~~lg~~~l~~~~~~~~~~ 204 (1156)
+..+|+|.++++...+++.++|++++++++|++.. + ++++.... .+++.++++++..
T Consensus 92 r~~~~~~l~~l~~~~~~~~~~g~~~s~~~~d~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-l~li~l~~~~~~~ 170 (585)
T TIGR01192 92 LTEAFGRIISMPLSWHQQRGTSNALHTLLRATETLFGLWLEFMRQHLATFVALFLLIPTAFAMDWR-LSIVLMVLGILYI 170 (585)
T ss_pred HHHHHHHHHcCCHHHhCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHH
Confidence 89999999999999999999999999999998760 0 00011111 1111112222223
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH------HHHHHHHH---HHHHHHHHHHHHH--H
Q 037346 205 LANFPLGRLREKFQDKFMETKDRRIKATSEILRNMRILKLQGWELKK------NETAWLKK---SVYTEAMISFFCW--G 273 (1156)
Q Consensus 205 ~~~~~~~~~~~~~~~~~~~~~d~r~~~~~e~l~~i~~IK~~~~e~r~------~e~~~~~~---~~~~~~~~~~~~~--~ 273 (1156)
.+...+.+...+..++..+..++..+.+.|.++|+++||.|+.|.+. ...+..+. .....+....+.. .
T Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 250 (585)
T TIGR01192 171 LIAKLVMQRTKNGQAAVEHHYHNVFKHVSDSISNVSVVHSYNRIEAETSALKQFTNNLLSAQYPVLDWWALASGLNRMAS 250 (585)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344455556666666777777889999999999999999987111 10011000 0111111111111 1
Q ss_pred HHHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCccccccCCCCC
Q 037346 274 APTFVSVVTFGSCILLGIPLESGMILSALTTFKILQEPIYYLPESISMMIQAKVPLDRIASFLCLEGLQTDVLEKMPRGN 353 (1156)
Q Consensus 274 ~~~~~~~~~f~~~~~~~~~lt~~~~ft~l~~~~~l~~pl~~l~~~~~~~~~a~~s~~Ri~~fl~~~~~~~~~~~~~~~~~ 353 (1156)
....+.++++|.+.+..+.+++|.+++++.++..+..|+..+...+..+.+++.+++|+.++++.++.........+...
T Consensus 251 ~~~~~~v~~~g~~~v~~g~it~g~l~a~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~ri~~~~~~~~~~~~~~~~~~~~~ 330 (585)
T TIGR01192 251 TISMMCILVIGTVLVIKGELSVGEVIAFIGFANLLIGRLDQMSGFITQIFEARAKLEDFFDLEDSVFQREEPADAPELPN 330 (585)
T ss_pred HHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccccCCccCCCCCC
Confidence 11223455678888888999999999999999999999999999999999999999999999986533211111011111
Q ss_pred CCccEEEeeeEEEeCCCCCCCccccceEEeeCCeEEEEEcCCCCChHHHHHHHhCCCCCCCcEEEEcCe-----------
Q 037346 354 SDTAIEIIDGSFSWDFSSPNPTLRNINLKVFHGMRVAVCGTVGSGKSSCLSCILGGVPKESGIIRLCGT----------- 422 (1156)
Q Consensus 354 ~~~~i~~~~~~f~~~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKSTll~~i~g~~~~~~G~i~~~g~----------- 422 (1156)
..+.++++|++|+|+. ++++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.
T Consensus 331 ~~~~i~~~~v~~~y~~--~~~~l~~i~~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~~ 408 (585)
T TIGR01192 331 VKGAVEFRHITFEFAN--SSQGVFDVSFEAKAGQTVAIVGPTGAGKTTLINLLQRVYDPTVGQILIDGIDINTVTRESLR 408 (585)
T ss_pred CCCeEEEEEEEEECCC--CCccccceeEEEcCCCEEEEECCCCCCHHHHHHHHccCCCCCCCEEEECCEEhhhCCHHHHH
Confidence 2346999999999973 346899999999999999999999999999999999999999999999983
Q ss_pred --EEEEecCCcCCCccHHHHhhcCCC-CCHHHHHHHHHHhCCchhhhhCCCCCccccccCCCCCCHHHHHHHHHHHhhcc
Q 037346 423 --KAYVAQSPWIQSGKIEENILFGKE-MDRERYERVLEACSLKKDLEVLPFGDQTIIGERGINLSGGQKQRIQIARPLYQ 499 (1156)
Q Consensus 423 --~~~v~Q~~~~~~~ti~eni~~~~~-~~~~~~~~~~~~~~l~~~~~~~~~g~~t~v~~~g~~LSgGqkqRi~lAral~~ 499 (1156)
++||||+|++|++|++|||.++.+ .++++..++++.+++.+++..+|+|++|.+|++|.+||||||||++|||||++
T Consensus 409 ~~i~~v~q~~~lf~~ti~~Ni~~~~~~~~~~~~~~a~~~~~~~~~i~~l~~g~~t~~~~~~~~LSgGq~qrl~lARall~ 488 (585)
T TIGR01192 409 KSIATVFQDAGLFNRSIRENIRLGREGATDEEVYEAAKAAAAHDFILKRSNGYDTLVGERGNRLSGGERQRLAIARAILK 488 (585)
T ss_pred hheEEEccCCccCcccHHHHHhcCCCCCCHHHHHHHHHHhCcHHHHHhccccccchhcCCCCCCCHHHHHHHHHHHHHhc
Confidence 699999999999999999999864 56788888999999999999999999999999999999999999999999999
Q ss_pred CCCeeeeeCCCCCcCHHHHHHHHHHHHh-cCCCEEEEEccCCCccccCCEEEEEeCCeEEEccChHHHHhcCcchHHHHH
Q 037346 500 DADIFLLDDPFSPVDDHTGAHLFKFCWV-SSSKTVIYATHQVEFLPAADLILVIKDGKITQAGKYSDILNSGTDFMELVG 578 (1156)
Q Consensus 500 ~~~illlDep~s~lD~~~~~~i~~~~~~-~~~~tvi~vtH~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~~~~~~~~~~ 578 (1156)
+|+++|||||||+||+++++.+.+.+.. .+++|+|+|||+++.++.||+|++|++|++++.|+++++.+.++.|.+++.
T Consensus 489 ~p~ililDEpts~LD~~~~~~i~~~l~~~~~~~tvI~isH~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~~~~y~~l~~ 568 (585)
T TIGR01192 489 NAPILVLDEATSALDVETEARVKNAIDALRKNRTTFIIAHRLSTVRNADLVLFLDQGRLIEKGSFQELIQKDGRFYKLLR 568 (585)
T ss_pred CCCEEEEECCccCCCHHHHHHHHHHHHHHhCCCEEEEEEcChHHHHcCCEEEEEECCEEEEECCHHHHHHCCChHHHHHH
Confidence 9999999999999999999999877654 468999999999999989999999999999999999999988888888775
Q ss_pred hh
Q 037346 579 AH 580 (1156)
Q Consensus 579 ~~ 580 (1156)
.+
T Consensus 569 ~~ 570 (585)
T TIGR01192 569 RS 570 (585)
T ss_pred hC
Confidence 43
|
This model describes glucan exporter ATP binding protein in bacteria. It belongs to the larger ABC transporter superfamily with the characteristic ATP binding motif. The In general, this protein is in some ways implicated in osmoregulation and suggested to participate in the export of glucan from the cytoplasm to periplasm. The cyclic beta-1,2-glucan in the bactrerial periplasmic space is suggested to confer the property of high osmolority. It has also been demonstrated that mutants in this loci have lost functions of virulence and motility. It is unclear as to how virulence and osmoadaptaion are related. |
| >PRK10789 putative multidrug transporter membrane\ATP-binding components; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.5e-62 Score=598.48 Aligned_cols=489 Identities=22% Similarity=0.334 Sum_probs=374.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCC-cc-c---chhhHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 037346 89 LALLYTLATYVGPYLIDNFVQYLNGRQ-AF-E---YEGYVL------CLSERHWFFQVQQFGIRFRATLFAMIYNKGLTL 157 (1156)
Q Consensus 89 ~~~~~~~~~~~~p~ll~~~i~~~~~~~-~~-~---~~g~~l------~~~~~~~~~~~~~~~~~~r~~l~~~i~~k~l~l 157 (1156)
+.++..++..+.|++++.++|.+.... .. . +.++++ .++.....+...+.+.++...++..+|+|++++
T Consensus 3 ~~~~~~~~~~~~p~~~~~iid~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~l~~~ll~~ 82 (569)
T PRK10789 3 LLIIIAMLQLIPPKVVGIIVDGVTEQHMTTGQILMWIGTMVLIAVVVYLLRYVWRVLLFGASYQLAVELREDFYRQLSRQ 82 (569)
T ss_pred ehHHHHHHHHHHHHHHHHHHHHhccCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 345666777889999999999765321 11 1 111111 111122223445677888889999999999999
Q ss_pred CccccCCCCHHHHHHHHHHHHHHH---------------H------HHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHH
Q 037346 158 SGQAKQGNTSGEIINLIAVDAERA---------------L------LILYKKLGL-ASIATLLATAIVMLANFPLGRLRE 215 (1156)
Q Consensus 158 ~~~~~~~~~~g~i~nl~s~D~~~~---------------~------~ll~~~lg~-~~l~~~~~~~~~~~~~~~~~~~~~ 215 (1156)
+...+++.++|++++++++|++.. + ++++..++| .+++.++++++.+.+...+.+...
T Consensus 83 ~~~~~~~~~~g~i~srl~~Dv~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~li~l~~~~l~~~~~~~~~~~~~ 162 (569)
T PRK10789 83 HPEFYLRHRTGDLMARATNDVDRVVFAAGEGVLTLVDSLVMGCAVLIVMSTQISWQLTLLALLPMPVMAIMIKRYGDQLH 162 (569)
T ss_pred CHHHHcCCCHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 998888999999999999999870 0 000011111 111112222222333334455555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH------HHHHHHHH---HHHHHHHHHHHHHHH--HHHHHHHHHHH
Q 037346 216 KFQDKFMETKDRRIKATSEILRNMRILKLQGWELK------KNETAWLK---KSVYTEAMISFFCWG--APTFVSVVTFG 284 (1156)
Q Consensus 216 ~~~~~~~~~~d~r~~~~~e~l~~i~~IK~~~~e~r------~~e~~~~~---~~~~~~~~~~~~~~~--~~~~~~~~~f~ 284 (1156)
+..++..+..++..+.+.|.++|+++||.|++|.+ +...+..+ +.....+....+... ....+..+++|
T Consensus 163 ~~~~~~~~~~~~~~~~~~e~l~~i~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g 242 (569)
T PRK10789 163 ERFKLAQAAFSSLNDRTQESLTSIRMIKAFGLEDRQSALFAADAEDTGKKNMRVARIDARFDPTIYIAIGMANLLAIGGG 242 (569)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcChHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66666666677778899999999999999999911 11001111 111111111111111 11223345677
Q ss_pred HHHHhCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCccccccCCCCCCCccEEEeeeE
Q 037346 285 SCILLGIPLESGMILSALTTFKILQEPIYYLPESISMMIQAKVPLDRIASFLCLEGLQTDVLEKMPRGNSDTAIEIIDGS 364 (1156)
Q Consensus 285 ~~~~~~~~lt~~~~ft~l~~~~~l~~pl~~l~~~~~~~~~a~~s~~Ri~~fl~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 364 (1156)
.+.+.++.+|+|.+++++.+...+..|+..++..+..+.+++++.+||.++++.++....... +.....+.|+++|++
T Consensus 243 ~~lv~~g~lt~g~l~a~~~~~~~~~~pl~~l~~~~~~~~~~~~a~~ri~~ll~~~~~~~~~~~--~~~~~~~~I~~~~v~ 320 (569)
T PRK10789 243 SWMVVNGSLTLGQLTSFVMYLGLMIWPMLALAWMFNIVERGSAAYSRIRAMLAEAPVVKDGSE--PVPEGRGELDVNIRQ 320 (569)
T ss_pred HHHHHcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcccCCCC--CCCCCCCcEEEEEEE
Confidence 788888999999999999999999999999999999999999999999999987543221111 111123469999999
Q ss_pred EEeCCCCCCCccccceEEeeCCeEEEEEcCCCCChHHHHHHHhCCCCCCCcEEEEcCe-------------EEEEecCCc
Q 037346 365 FSWDFSSPNPTLRNINLKVFHGMRVAVCGTVGSGKSSCLSCILGGVPKESGIIRLCGT-------------KAYVAQSPW 431 (1156)
Q Consensus 365 f~~~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKSTll~~i~g~~~~~~G~i~~~g~-------------~~~v~Q~~~ 431 (1156)
|+|+.. ++++|+|+||++++|++++|+||||||||||+++|+|+++|++|+|.++|. ++|++|+|+
T Consensus 321 ~~y~~~-~~~~l~~i~~~i~~G~~~~ivG~sGsGKSTLl~ll~g~~~p~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~ 399 (569)
T PRK10789 321 FTYPQT-DHPALENVNFTLKPGQMLGICGPTGSGKSTLLSLIQRHFDVSEGDIRFHDIPLTKLQLDSWRSRLAVVSQTPF 399 (569)
T ss_pred EECCCC-CCccccCeeEEECCCCEEEEECCCCCCHHHHHHHHhcccCCCCCEEEECCEEHhhCCHHHHHhheEEEccCCe
Confidence 999742 457999999999999999999999999999999999999999999999983 699999999
Q ss_pred CCCccHHHHhhcCC-CCCHHHHHHHHHHhCCchhhhhCCCCCccccccCCCCCCHHHHHHHHHHHhhccCCCeeeeeCCC
Q 037346 432 IQSGKIEENILFGK-EMDRERYERVLEACSLKKDLEVLPFGDQTIIGERGINLSGGQKQRIQIARPLYQDADIFLLDDPF 510 (1156)
Q Consensus 432 ~~~~ti~eni~~~~-~~~~~~~~~~~~~~~l~~~~~~~~~g~~t~v~~~g~~LSgGqkqRi~lAral~~~~~illlDep~ 510 (1156)
+|++|++|||.++. +.++++++++++.+++.+++..+|+|++|.+|++|.+||||||||++||||++++|+++||||||
T Consensus 400 lf~~ti~~Ni~~~~~~~~~~~~~~~~~~~~l~~~i~~lp~gl~t~~~~~g~~LSgGq~qRi~lARall~~~~illlDEpt 479 (569)
T PRK10789 400 LFSDTVANNIALGRPDATQQEIEHVARLASVHDDILRLPQGYDTEVGERGVMLSGGQKQRISIARALLLNAEILILDDAL 479 (569)
T ss_pred eccccHHHHHhcCCCCCCHHHHHHHHHHcCCHHHHHhCcCcccceecCCCCcCCHHHHHHHHHHHHHhcCCCEEEEECcc
Confidence 99999999999985 46788999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcCHHHHHHHHHHHHh-cCCCEEEEEccCCCccccCCEEEEEeCCeEEEccChHHHHhcCcchHHHHHhh
Q 037346 511 SPVDDHTGAHLFKFCWV-SSSKTVIYATHQVEFLPAADLILVIKDGKITQAGKYSDILNSGTDFMELVGAH 580 (1156)
Q Consensus 511 s~lD~~~~~~i~~~~~~-~~~~tvi~vtH~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~~~~~~~~~~~~ 580 (1156)
|+||+++++.+.+.+.. .+++|+|+|||+++.++.||+|++|++|++++.|+++++++.++.|.+++..+
T Consensus 480 s~LD~~~~~~i~~~l~~~~~~~tii~itH~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~~~~y~~l~~~~ 550 (569)
T PRK10789 480 SAVDGRTEHQILHNLRQWGEGRTVIISAHRLSALTEASEILVMQHGHIAQRGNHDQLAQQSGWYRDMYRYQ 550 (569)
T ss_pred ccCCHHHHHHHHHHHHHHhCCCEEEEEecchhHHHcCCEEEEEeCCEEEEecCHHHHHHcCChHHHHHHHh
Confidence 99999999999887654 47899999999999999999999999999999999999998888888877654
|
|
| >PTZ00265 multidrug resistance protein (mdr1); Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-62 Score=644.71 Aligned_cols=505 Identities=22% Similarity=0.232 Sum_probs=372.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcc-----cchhhHH------HHHHHHHHHHHHHHHHHHH
Q 037346 75 LFFSAWQEILFIAILALLYTLATYVGPYLIDNFVQYLNGRQAF-----EYEGYVL------CLSERHWFFQVQQFGIRFR 143 (1156)
Q Consensus 75 l~~~~~~~~~~~~~~~~~~~~~~~~~p~ll~~~i~~~~~~~~~-----~~~g~~l------~~~~~~~~~~~~~~~~~~r 143 (1156)
.++.+++.+++++++.++..++..+.|+++..+++.+...... .+..+++ .++.....+...+.+.++.
T Consensus 819 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~l~~~~~~i~~~~~~~l~~~~~~~~~~~~~ 898 (1466)
T PTZ00265 819 EIFSYKKDVTIIALSILVAGGLYPVFALLYAKYVSTLFDFANLEANSNKYSLYILVIAIAMFISETLKNYYNNVIGEKVE 898 (1466)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455666688888888899999999999999999865322110 1111111 1222223345677888999
Q ss_pred HHHHHHHHHHHhcCCccccCC--CCHHHHHHHHHHHHHH-------HHHHHH-------HH----HHHHHHHHHHHHHHH
Q 037346 144 ATLFAMIYNKGLTLSGQAKQG--NTSGEIINLIAVDAER-------ALLILY-------KK----LGLASIATLLATAIV 203 (1156)
Q Consensus 144 ~~l~~~i~~k~l~l~~~~~~~--~~~g~i~nl~s~D~~~-------~~~ll~-------~~----lg~~~l~~~~~~~~~ 203 (1156)
..++..+|+++++++...+++ +++|++++++++|++. .+..+. .. +-+...+++++++++
T Consensus 899 ~~lR~~lf~~ll~~~~~~fd~~~~~~G~l~srl~~Dv~~l~~~~~~~l~~~~~~i~~~i~~~~~~~~~~~~l~l~~~~~~ 978 (1466)
T PTZ00265 899 KTMKRRLFENILYQEISFFDQDKHAPGLLSAHINRDVHLLKTGLVNNIVIFTHFIVLFLVSMVMSFYFCPIVAAVLTGTY 978 (1466)
T ss_pred HHHHHHHHHHHHcCCHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999988875 8899999999999987 000000 00 001111111111111
Q ss_pred HHHHHHHHHHHHHH-HHHHH-----------------HHHHHHHHHHHHHHHHHHHHHHHhHHHH---HH--HHHHHHHH
Q 037346 204 MLANFPLGRLREKF-QDKFM-----------------ETKDRRIKATSEILRNMRILKLQGWELK---KN--ETAWLKKS 260 (1156)
Q Consensus 204 ~~~~~~~~~~~~~~-~~~~~-----------------~~~d~r~~~~~e~l~~i~~IK~~~~e~r---~~--e~~~~~~~ 260 (1156)
.++...+.+..... .++.. +..++....++|.++||++||.|+.|.+ +- ..+...+.
T Consensus 979 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~tVka~~~e~~~~~~~~~~~~~~~~~ 1058 (1466)
T PTZ00265 979 FIFMRVFAIRARLTANKDVEKKEINQPGTVFAYNSDDEIFKDPSFLIQEAFYNMNTVIIYGLEDYFCNLIEKAIDYSNKG 1058 (1466)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhccccccccchhhhHHHHHHHHHHHHHHHhcHHHHHHhcchHHHHHHHHHHHHHHHHH
Confidence 11111122211111 11111 1123346789999999999999999911 11 11111111
Q ss_pred H----HHHHHHHHHHHHH--HHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 037346 261 V----YTEAMISFFCWGA--PTFVSVVTFGSCILLGIPLESGMILSALTTFKILQEPIYYLPESISMMIQAKVPLDRIAS 334 (1156)
Q Consensus 261 ~----~~~~~~~~~~~~~--~~~~~~~~f~~~~~~~~~lt~~~~ft~l~~~~~l~~pl~~l~~~~~~~~~a~~s~~Ri~~ 334 (1156)
. ...++...+.... ...+.++++|++++..+.++.+.+++++.++.....++..+...+..+.+++++++|+.+
T Consensus 1059 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~lv~~g~it~g~l~~~~~~~~~~~~~~~~l~~~~~~~~~a~~a~~ri~~ 1138 (1466)
T PTZ00265 1059 QKRKTLVNSMLWGFSQSAQLFINSFAYWFGSFLIRRGTILVDDFMKSLFTFLFTGSYAGKLMSLKGDSENAKLSFEKYYP 1138 (1466)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1 1111111111111 123456688889888999999999998877666667788899999999999999999999
Q ss_pred HhccCCCC-ccccccCC---CCCCCccEEEeeeEEEeCCCCCCCccccceEEeeCCeEEEEEcCCCCChHHHHHHHhCCC
Q 037346 335 FLCLEGLQ-TDVLEKMP---RGNSDTAIEIIDGSFSWDFSSPNPTLRNINLKVFHGMRVAVCGTVGSGKSSCLSCILGGV 410 (1156)
Q Consensus 335 fl~~~~~~-~~~~~~~~---~~~~~~~i~~~~~~f~~~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKSTll~~i~g~~ 410 (1156)
+++.++.. ........ .....+.|+|+||+|+|+.+++.++|+|+||+|++|+++|||||||||||||+++|+|+|
T Consensus 1139 ll~~~~~~~~~~~~~~~~~~~~~~~g~I~f~nVsF~Y~~~~~~~vL~~lsl~i~~G~~vAIVG~SGsGKSTl~~LL~r~y 1218 (1466)
T PTZ00265 1139 LIIRKSNIDVRDNGGIRIKNKNDIKGKIEIMDVNFRYISRPNVPIYKDLTFSCDSKKTTAIVGETGSGKSTVMSLLMRFY 1218 (1466)
T ss_pred HHCCCCcCCCCCCcccccccCCCCCceEEEEEEEEECCCCCCCccccCeeEEEcCCCEEEEECCCCCCHHHHHHHHHHhC
Confidence 99875321 11000010 112335799999999998655568999999999999999999999999999999999999
Q ss_pred CC------------------------------------------------------CCcEEEEcCe-------------E
Q 037346 411 PK------------------------------------------------------ESGIIRLCGT-------------K 423 (1156)
Q Consensus 411 ~~------------------------------------------------------~~G~i~~~g~-------------~ 423 (1156)
+| ++|+|.+||. +
T Consensus 1219 dp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~I~idG~di~~~~~~~lR~~i 1298 (1466)
T PTZ00265 1219 DLKNDHHIVFKNEHTNDMTNEQDYQGDEEQNVGMKNVNEFSLTKEGGSGEDSTVFKNSGKILLDGVDICDYNLKDLRNLF 1298 (1466)
T ss_pred CCccccccccccccccccccccccccccccccccccccccccccccccccccccCCCCCeEEECCEEHHhCCHHHHHhhc
Confidence 98 6999999983 7
Q ss_pred EEEecCCcCCCccHHHHhhcCCC-CCHHHHHHHHHHhCCchhhhhCCCCCccccccCCCCCCHHHHHHHHHHHhhccCCC
Q 037346 424 AYVAQSPWIQSGKIEENILFGKE-MDRERYERVLEACSLKKDLEVLPFGDQTIIGERGINLSGGQKQRIQIARPLYQDAD 502 (1156)
Q Consensus 424 ~~v~Q~~~~~~~ti~eni~~~~~-~~~~~~~~~~~~~~l~~~~~~~~~g~~t~v~~~g~~LSgGqkqRi~lAral~~~~~ 502 (1156)
+||+|+|.+|++||+|||.+|.+ .+++.++++++.+++++++..+|+|++|.||++|.+|||||||||||||||+++|+
T Consensus 1299 ~~V~Qep~LF~gTIreNI~~g~~~at~eeI~~A~k~A~l~~fI~~LP~GydT~VGe~G~~LSGGQkQRIaIARALlr~p~ 1378 (1466)
T PTZ00265 1299 SIVSQEPMLFNMSIYENIKFGKEDATREDVKRACKFAAIDEFIESLPNKYDTNVGPYGKSLSGGQKQRIAIARALLREPK 1378 (1466)
T ss_pred cEeCCCCccccccHHHHHhcCCCCCCHHHHHHHHHHcCCHHHHHhCccccCCccCCCCCcCCHHHHHHHHHHHHHhcCCC
Confidence 99999999999999999999965 67889999999999999999999999999999999999999999999999999999
Q ss_pred eeeeeCCCCCcCHHHHHHHHHHHHhc---CCCEEEEEccCCCccccCCEEEEEeC----CeEE-EccChHHHHh-cCcch
Q 037346 503 IFLLDDPFSPVDDHTGAHLFKFCWVS---SSKTVIYATHQVEFLPAADLILVIKD----GKIT-QAGKYSDILN-SGTDF 573 (1156)
Q Consensus 503 illlDep~s~lD~~~~~~i~~~~~~~---~~~tvi~vtH~~~~~~~~d~i~~l~~----G~i~-~~g~~~~l~~-~~~~~ 573 (1156)
|||||||||+||+++++.|.+.+... +++|+|+||||++.++.||+|++|++ |+++ ++|+|+|+++ .++.|
T Consensus 1379 ILLLDEaTSaLD~~sE~~I~~~L~~~~~~~~~TvIiIaHRlsti~~aD~Ivvl~~~~~~G~iv~e~Gth~eLl~~~~g~Y 1458 (1466)
T PTZ00265 1379 ILLLDEATSSLDSNSEKLIEKTIVDIKDKADKTIITIAHRIASIKRSDKIVVFNNPDRTGSFVQAHGTHEELLSVQDGVY 1458 (1466)
T ss_pred EEEEeCcccccCHHHHHHHHHHHHHHhccCCCEEEEEechHHHHHhCCEEEEEeCCCCCCCEEEEecCHHHHHhcCCChH
Confidence 99999999999999999998776553 58999999999999999999999999 9954 8999999997 47888
Q ss_pred HHHHHh
Q 037346 574 MELVGA 579 (1156)
Q Consensus 574 ~~~~~~ 579 (1156)
.++++.
T Consensus 1459 ~~l~~~ 1464 (1466)
T PTZ00265 1459 KKYVKL 1464 (1466)
T ss_pred HHHHhh
Confidence 887754
|
|
| >TIGR03797 NHPM_micro_ABC2 NHPM bacteriocin system ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.4e-63 Score=620.07 Aligned_cols=426 Identities=20% Similarity=0.275 Sum_probs=345.8
Q ss_pred HHHHHHHHHHHHHHHHhccccccccccccccchhhhhcccccccchhhhcccchHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 037346 712 AGYKTATQLFNKMHVCIFRAPMYFFDSTPSGRILNRVSENVKWADQSAADMDIPYDIGAFAFSMIQLLGIIVVMSLVAWQ 791 (1156)
Q Consensus 712 ~~~~~~~~l~~~l~~~ll~~p~~ff~~~~~G~il~R~s~d~~~~d~~~~d~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 791 (1156)
.+.+...+++.+++++++++|+.||+++++|++++|++ |...++..+...+...+..+..+++.+++++.++|+
T Consensus 203 ~~~~~~~~l~~~~~~~ll~~~~~~~~~~~~g~~~~r~~------~~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 276 (686)
T TIGR03797 203 LETRMDASLQAAVWDRLLRLPVSFFRQYSTGDLASRAM------GISQIRRILSGSTLTTLLSGIFALLNLGLMFYYSWK 276 (686)
T ss_pred HHHHHHHHHHHHHHHHHHcCCHHHHCCCChhHHHHHHh------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45688889999999999999999999999999999996 344455545455555555566666777888889999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhChHHHHHHhhccchhhhhhcchHHHHHHHHHHHHHHHhhHHHHHHH
Q 037346 792 VLIVFVPVIATFIWYQQYYITSTRELSRLIGVCKAPVIQQFSETISGSTTIRSLDQELRFRDTNMKLIDEYSRPKFHIAG 871 (1156)
Q Consensus 792 l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~e~l~Gi~tIra~~~e~~~~~~~~~~~~~~~~~~~~~~~ 871 (1156)
++++++.++++++++..++.+..+...+......+...+++.|+++|+.+||+++.|+++.++|.+..++..+..+....
T Consensus 277 l~li~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~ 356 (686)
T TIGR03797 277 LALVAVALALVAIAVTLVLGLLQVRKERRLLELSGKISGLTVQLINGISKLRVAGAENRAFARWAKLFSRQRKLELSAQR 356 (686)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88776666555555555555555555566666677889999999999999999999999999999999988888777766
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH---HH---------------------HcCCCccchHHHHHHHhHHHHHHHHhhcCCC
Q 037346 872 AMEWLRFCIDMLSSITFAFSLAF---LI---------------------SVPNGIIHPYKNLERKIISVERILQCACIPS 927 (1156)
Q Consensus 872 ~~~~~~~~l~~~~~~~~~~~~~~---~~---------------------~~~~~~~~~~~~~~~~~~s~~Ri~~~~~~~~ 927 (1156)
...|.......+..+..+++..+ ++ .+.........++.....+.+|+.++++.++
T Consensus 357 ~~~~~~~~~~~i~~~~~~~il~~g~~lv~~g~ltiG~lva~~~l~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~l~~~~ 436 (686)
T TIGR03797 357 IENLLTVFNAVLPVLTSAALFAAAISLLGGAGLSLGSFLAFNTAFGSFSGAVTQLSNTLISILAVIPLWERAKPILEALP 436 (686)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCc
Confidence 66665555444332222211111 00 0011112223567778889999999988766
Q ss_pred CCcccccCCCCCCCCCCCCeEEEEEEEEEEcCCCC---------------ceeeCCCCCCHHHHHHHHhhcccCCCceEE
Q 037346 928 EPALVIEATKPNNSRPSHGEVNIRHLQVRYAPNLP---------------LVLRGRTGSGKSTLIQTLFRIVESTAGHIL 992 (1156)
Q Consensus 928 e~~~~~~~~~~~~~~p~~g~I~~~~Vsf~Y~~~~~---------------~vL~G~SGsGKSTL~~lL~rl~~p~~G~I~ 992 (1156)
|.+.. .. ...+..|.|+|+||+|+|+++.+ ++++|+||||||||+++|+|+|+|++|+|+
T Consensus 437 e~~~~---~~--~~~~~~~~I~~~nvsf~Y~~~~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLlklL~gl~~p~~G~I~ 511 (686)
T TIGR03797 437 EVDEA---KT--DPGKLSGAIEVDRVTFRYRPDGPLILDDVSLQIEPGEFVAIVGPSGSGKSTLLRLLLGFETPESGSVF 511 (686)
T ss_pred ccccC---cC--CCCCCCceEEEEEEEEEcCCCCccceeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEE
Confidence 54211 11 11123578999999999964333 456699999999999999999999999999
Q ss_pred EcCeeCCCCChHHHhhcCeeeccccccccccchhccCCCCCCCHHHHHHHHHHcCCChHHHhhcCCcccc----------
Q 037346 993 IDGKDISLIGLHDLRTRLSIIPQDPTMFEGTTRSNLDPLEEHADEQIWEALDKCQLGDEVRKKKGKLDSQ---------- 1062 (1156)
Q Consensus 993 idG~di~~i~~~~LR~~i~~VpQdp~LF~gTIr~Nl~~~~~~~deei~~al~~~~l~~~i~~lp~gl~s~---------- 1062 (1156)
+||+|+++++.+++|++|++|||||++|+|||||||.++++.+|+++++|++.+++++++.++|+|+||.
T Consensus 512 idg~~i~~~~~~~lr~~i~~v~Q~~~lf~gTI~eNi~~~~~~~~e~i~~al~~a~l~~~i~~lp~G~dt~ige~G~~LSG 591 (686)
T TIGR03797 512 YDGQDLAGLDVQAVRRQLGVVLQNGRLMSGSIFENIAGGAPLTLDEAWEAARMAGLAEDIRAMPMGMHTVISEGGGTLSG 591 (686)
T ss_pred ECCEEcCcCCHHHHHhccEEEccCCccCcccHHHHHhcCCCCCHHHHHHHHHHcCcHHHHHhccccccccccCCCCCCCH
Confidence 9999999999999999999999999999999999999987788999999999999999999999999975
Q ss_pred --------ccccccCCCEEEEecCCcCCCHHHHHHHHHHHHHhcCCceEEEeecCcccccccCEEEEEeCcEEeeecChh
Q 037346 1063 --------GRVLLKKSKVLVLDEATASVDTATDNQIQQTLRQHFSDCTVVTIAHRITSVLDSAMVLLLNHGLIKEYDSPT 1134 (1156)
Q Consensus 1063 --------ARALLr~~~ILiLDEaTS~LD~~te~~I~~~l~~~~~~~TvI~IaHrl~ti~~~D~I~Vl~~G~IvE~G~~~ 1134 (1156)
||||+++|+|||||||||+||++||+.|++.|++. ++|+|+||||++++..||+|+||++|+|+|.|+|+
T Consensus 592 GQrQRialARAll~~p~iLiLDEpTS~LD~~te~~i~~~L~~~--~~T~IiItHr~~~i~~~D~Iivl~~G~iv~~G~~~ 669 (686)
T TIGR03797 592 GQRQRLLIARALVRKPRILLFDEATSALDNRTQAIVSESLERL--KVTRIVIAHRLSTIRNADRIYVLDAGRVVQQGTYD 669 (686)
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHh--CCeEEEEecChHHHHcCCEEEEEECCEEEEECCHH
Confidence 89999999999999999999999999999999987 68999999999999999999999999999999999
Q ss_pred HHhcCCCChHHHHHHHH
Q 037346 1135 KLLENKSSSFAQLVAEY 1151 (1156)
Q Consensus 1135 eLl~~~~g~f~~l~~~~ 1151 (1156)
||+++ +|.|++|++++
T Consensus 670 ~Ll~~-~~~y~~l~~~q 685 (686)
T TIGR03797 670 ELMAR-EGLFAQLARRQ 685 (686)
T ss_pred HHHhC-CcHHHHHHHhc
Confidence 99975 79999999854
|
Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal propeptide cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, a conserved propeptide sequence with a classic Gly-Gly motif |
| >TIGR00958 3a01208 Conjugate Transporter-2 (CT2) Family protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.3e-63 Score=620.70 Aligned_cols=425 Identities=21% Similarity=0.331 Sum_probs=346.4
Q ss_pred HHHHHHHHHHHHHHHHhccccccccccccccchhhhhcccccccchhhhcccchHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 037346 712 AGYKTATQLFNKMHVCIFRAPMYFFDSTPSGRILNRVSENVKWADQSAADMDIPYDIGAFAFSMIQLLGIIVVMSLVAWQ 791 (1156)
Q Consensus 712 ~~~~~~~~l~~~l~~~ll~~p~~ff~~~~~G~il~R~s~d~~~~d~~~~d~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 791 (1156)
.+.+...++|.+++++++++|+.||+++++|++++|++ .|+..++..+...+..++..++.+++.+++++..+|+
T Consensus 228 ~~~~~~~~lr~~l~~~ll~~~~~~f~~~~~G~i~srl~-----~Di~~i~~~~~~~~~~~l~~~~~~i~~~~~l~~~s~~ 302 (711)
T TIGR00958 228 TMARINLRIREDLFRSLLRQDLGFFDENKTGELTSRLS-----SDTQTMSRSLSLNVNVLLRNLVMLLGLLGFMLWLSPR 302 (711)
T ss_pred HHHHHHHHHHHHHHHHHHcCCHHHHcCCCchHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Confidence 45678889999999999999999999999999999999 7888888777777888888888888899999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhChHHHHHHhhccchhhhhhcchHHHHHHHHHHHHHHHhhHHHHHHH
Q 037346 792 VLIVFVPVIATFIWYQQYYITSTRELSRLIGVCKAPVIQQFSETISGSTTIRSLDQELRFRDTNMKLIDEYSRPKFHIAG 871 (1156)
Q Consensus 792 l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~e~l~Gi~tIra~~~e~~~~~~~~~~~~~~~~~~~~~~~ 871 (1156)
++++++..+++.+++...+.+..++..+...+..+...+++.|+++|+++||+|+.|+++.++|.+..++..+...+...
T Consensus 303 l~l~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~ 382 (711)
T TIGR00958 303 LTMVTLINLPLVFLAEKVFGKRYQLLSEELQEAVAKANQVAEEALSGMRTVRSFAAEEGEASRFKEALEETLQLNKRKAL 382 (711)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHH
Confidence 98877666666666777777777777777777788899999999999999999999999999999988887766544332
Q ss_pred H---HHHHHHHHHHHHHHHHHHHHHHHHH---------------------cCCCccchHHHHHHHhHHHHHHHHhhcCCC
Q 037346 872 A---MEWLRFCIDMLSSITFAFSLAFLIS---------------------VPNGIIHPYKNLERKIISVERILQCACIPS 927 (1156)
Q Consensus 872 ~---~~~~~~~l~~~~~~~~~~~~~~~~~---------------------~~~~~~~~~~~~~~~~~s~~Ri~~~~~~~~ 927 (1156)
. ..|....+..+..+.+.......+. +.........++.+...+.+|+.++.+.++
T Consensus 383 ~~~~~~~~~~~~~~~~~~~il~~g~~lv~~g~it~G~lva~~~~~~~l~~~l~~l~~~~~~~~~~~~a~~ri~~~l~~~~ 462 (711)
T TIGR00958 383 AYAGYLWTTSVLGMLIQVLVLYYGGQLVLTGKVSSGNLVSFLLYQEQLGEAVRVLSYVYSGMMQAVGASEKVFEYLDRKP 462 (711)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCC
Confidence 2 2232222222211111111111110 001111223567788899999999988765
Q ss_pred CCcccccCCCCCCCCCCCCeEEEEEEEEEEcC----------------CCCceeeCCCCCCHHHHHHHHhhcccCCCceE
Q 037346 928 EPALVIEATKPNNSRPSHGEVNIRHLQVRYAP----------------NLPLVLRGRTGSGKSTLIQTLFRIVESTAGHI 991 (1156)
Q Consensus 928 e~~~~~~~~~~~~~~p~~g~I~~~~Vsf~Y~~----------------~~~~vL~G~SGsGKSTL~~lL~rl~~p~~G~I 991 (1156)
+.+.. . ....++..|.|+|+||+|+|+. |+.++|+|+||||||||+++|+|+|+|++|+|
T Consensus 463 ~~~~~--~--~~~~~~~~~~I~~~nVsf~Y~~~~~~~vL~~isl~i~~Ge~vaIvG~SGsGKSTLl~lL~gl~~p~~G~I 538 (711)
T TIGR00958 463 NIPLT--G--TLAPLNLEGLIEFQDVSFSYPNRPDVPVLKGLTFTLHPGEVVALVGPSGSGKSTVAALLQNLYQPTGGQV 538 (711)
T ss_pred CCCCC--C--CCCCCCCCCeEEEEEEEEECCCCCCCccccCceEEEcCCCEEEEECCCCCCHHHHHHHHHhccCCCCCEE
Confidence 53211 1 1112344678999999999963 22346779999999999999999999999999
Q ss_pred EEcCeeCCCCChHHHhhcCeeeccccccccccchhccCCCC-CCCHHHHHHHHHHcCCChHHHhhcCCcccc--------
Q 037346 992 LIDGKDISLIGLHDLRTRLSIIPQDPTMFEGTTRSNLDPLE-EHADEQIWEALDKCQLGDEVRKKKGKLDSQ-------- 1062 (1156)
Q Consensus 992 ~idG~di~~i~~~~LR~~i~~VpQdp~LF~gTIr~Nl~~~~-~~~deei~~al~~~~l~~~i~~lp~gl~s~-------- 1062 (1156)
++||+|+++++.+++|++|++|||||++|+|||||||.++. +.+||++++|++.+++++++.++|+|+||.
T Consensus 539 ~idg~~i~~~~~~~lr~~i~~v~Q~~~lF~gTIreNI~~g~~~~~~e~i~~al~~a~l~~~i~~lp~GldT~ige~G~~L 618 (711)
T TIGR00958 539 LLDGVPLVQYDHHYLHRQVALVGQEPVLFSGSVRENIAYGLTDTPDEEIMAAAKAANAHDFIMEFPNGYDTEVGEKGSQL 618 (711)
T ss_pred EECCEEHHhcCHHHHHhhceEEecCccccccCHHHHHhcCCCCCCHHHHHHHHHHcCCHHHHHhCCCccCCcccCCCCcC
Confidence 99999999999999999999999999999999999999874 467999999999999999999999999975
Q ss_pred ----------ccccccCCCEEEEecCCcCCCHHHHHHHHHHHHHhcCCceEEEeecCcccccccCEEEEEeCcEEeeecC
Q 037346 1063 ----------GRVLLKKSKVLVLDEATASVDTATDNQIQQTLRQHFSDCTVVTIAHRITSVLDSAMVLLLNHGLIKEYDS 1132 (1156)
Q Consensus 1063 ----------ARALLr~~~ILiLDEaTS~LD~~te~~I~~~l~~~~~~~TvI~IaHrl~ti~~~D~I~Vl~~G~IvE~G~ 1132 (1156)
|||++++|+|||||||||+||++||+.|++ ....+++|+|+||||++++..||+|+||++|+|+|.|+
T Consensus 619 SGGQkQRlalARALl~~p~ILILDEpTSaLD~~te~~i~~--~~~~~~~TvIiItHrl~~i~~aD~IivL~~G~ive~Gt 696 (711)
T TIGR00958 619 SGGQKQRIAIARALVRKPRVLILDEATSALDAECEQLLQE--SRSRASRTVLLIAHRLSTVERADQILVLKKGSVVEMGT 696 (711)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEEccccccCHHHHHHHHH--hhccCCCeEEEEeccHHHHHhCCEEEEEECCEEEEeeC
Confidence 899999999999999999999999999999 33457899999999999999999999999999999999
Q ss_pred hhHHhcCCCChHHHHH
Q 037346 1133 PTKLLENKSSSFAQLV 1148 (1156)
Q Consensus 1133 ~~eLl~~~~g~f~~l~ 1148 (1156)
|+||+++ +|.|++|+
T Consensus 697 ~~eL~~~-~~~y~~lv 711 (711)
T TIGR00958 697 HKQLMED-QGCYKHLV 711 (711)
T ss_pred HHHHHhC-CCchHhcC
Confidence 9999975 68999874
|
|
| >TIGR01193 bacteriocin_ABC ABC-type bacteriocin transporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-62 Score=621.25 Aligned_cols=427 Identities=24% Similarity=0.342 Sum_probs=341.1
Q ss_pred HHHHHHHHHHHHHHHHhccccccccccccccchhhhhcccccccchhhhcccchHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 037346 712 AGYKTATQLFNKMHVCIFRAPMYFFDSTPSGRILNRVSENVKWADQSAADMDIPYDIGAFAFSMIQLLGIIVVMSLVAWQ 791 (1156)
Q Consensus 712 ~~~~~~~~l~~~l~~~ll~~p~~ff~~~~~G~il~R~s~d~~~~d~~~~d~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 791 (1156)
.+.+...+++.++++++++.|+.||+++++|++++|++ |...+...+...+..++..++.+++.++++++++|+
T Consensus 223 ~~~~~~~~l~~~~~~~ll~l~~~~f~~~~~G~~~~r~~------~~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 296 (708)
T TIGR01193 223 LGQRLSIDIILSYIKHLFELPMSFFSTRRTGEIVSRFT------DASSIIDALASTILSLFLDMWILVIVGLFLVRQNML 296 (708)
T ss_pred HHHHHHHHHHHHHHHHHHcCCHHHhCCCchhHHHHHhh------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Confidence 45678889999999999999999999999999999997 223333333333444455555666677778888999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhChHHHHHHhhccchhhhhhcchHHHHHHHHHHHHHHHhhHHHHHHH
Q 037346 792 VLIVFVPVIATFIWYQQYYITSTRELSRLIGVCKAPVIQQFSETISGSTTIRSLDQELRFRDTNMKLIDEYSRPKFHIAG 871 (1156)
Q Consensus 792 l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~e~l~Gi~tIra~~~e~~~~~~~~~~~~~~~~~~~~~~~ 871 (1156)
++++++..+++++++...+.+..++..+......+...+.+.|+++|+++||+||.|+.+.+++.+..++..+..+....
T Consensus 297 l~li~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~ 376 (708)
T TIGR01193 297 LFLLSLLSIPVYAVIIILFKRTFNKLNHDAMQANAVLNSSIIEDLNGIETIKSLTSEAERYSKIDSEFGDYLNKSFKYQK 376 (708)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88877766666666666677777777777778888899999999999999999999999999999888877776665544
Q ss_pred HHHHHHHHHHHHHHH---HHHHHHHHHH---------------------HcCCCccchHHHHHHHhHHHHHHHHhhcCCC
Q 037346 872 AMEWLRFCIDMLSSI---TFAFSLAFLI---------------------SVPNGIIHPYKNLERKIISVERILQCACIPS 927 (1156)
Q Consensus 872 ~~~~~~~~l~~~~~~---~~~~~~~~~~---------------------~~~~~~~~~~~~~~~~~~s~~Ri~~~~~~~~ 927 (1156)
...+......++..+ .+..+..+++ .+.........+++....+++|+.++.+.++
T Consensus 377 ~~~~~~~~~~~~~~~~~i~il~~g~~lv~~g~ls~G~lva~~~l~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~l~~~~ 456 (708)
T TIGR01193 377 ADQGQQAIKAVTKLILNVVILWTGAYLVMRGKLTLGQLITFNALLSYFLTPLENIINLQPKLQAARVANNRLNEVYLVDS 456 (708)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 433333222222111 1111111110 1111112223567778899999999998877
Q ss_pred CCcccccCCCCCCCCCCCCeEEEEEEEEEEcCC--------------CCceeeCCCCCCHHHHHHHHhhcccCCCceEEE
Q 037346 928 EPALVIEATKPNNSRPSHGEVNIRHLQVRYAPN--------------LPLVLRGRTGSGKSTLIQTLFRIVESTAGHILI 993 (1156)
Q Consensus 928 e~~~~~~~~~~~~~~p~~g~I~~~~Vsf~Y~~~--------------~~~vL~G~SGsGKSTL~~lL~rl~~p~~G~I~i 993 (1156)
|.+... .....++..|.|+|+||+|+|+++ +.++|+|+||||||||+++|+|+|+|++|+|++
T Consensus 457 e~~~~~---~~~~~~~~~~~I~~~~vsf~y~~~~~iL~~isl~i~~G~~vaIvG~SGsGKSTLlklL~gl~~p~~G~I~i 533 (708)
T TIGR01193 457 EFINKK---KRTELNNLNGDIVINDVSYSYGYGSNILSDISLTIKMNSKTTIVGMSGSGKSTLAKLLVGFFQARSGEILL 533 (708)
T ss_pred cccccc---cccCCCCCCCcEEEEEEEEEcCCCCcceeceeEEECCCCEEEEECCCCCCHHHHHHHHhccCCCCCcEEEE
Confidence 643211 111223446789999999999643 334677999999999999999999999999999
Q ss_pred cCeeCCCCChHHHhhcCeeeccccccccccchhccCCC--CCCCHHHHHHHHHHcCCChHHHhhcCCcccc---------
Q 037346 994 DGKDISLIGLHDLRTRLSIIPQDPTMFEGTTRSNLDPL--EEHADEQIWEALDKCQLGDEVRKKKGKLDSQ--------- 1062 (1156)
Q Consensus 994 dG~di~~i~~~~LR~~i~~VpQdp~LF~gTIr~Nl~~~--~~~~deei~~al~~~~l~~~i~~lp~gl~s~--------- 1062 (1156)
||+|+++++.+++|++|+||||||+||+|||||||.++ ++.+|+++++|++.+++++++.++|+||||.
T Consensus 534 dg~~i~~~~~~~lr~~i~~v~Q~~~lf~gTI~eNi~l~~~~~~~~~~i~~a~~~a~l~~~i~~lp~gldt~i~e~G~~LS 613 (708)
T TIGR01193 534 NGFSLKDIDRHTLRQFINYLPQEPYIFSGSILENLLLGAKENVSQDEIWAACEIAEIKDDIENMPLGYQTELSEEGSSIS 613 (708)
T ss_pred CCEEHHHcCHHHHHHheEEEecCceehhHHHHHHHhccCCCCCCHHHHHHHHHHhCCHHHHHhcccccCcEecCCCCCCC
Confidence 99999999999999999999999999999999999987 3578999999999999999999999999975
Q ss_pred ---------ccccccCCCEEEEecCCcCCCHHHHHHHHHHHHHhcCCceEEEeecCcccccccCEEEEEeCcEEeeecCh
Q 037346 1063 ---------GRVLLKKSKVLVLDEATASVDTATDNQIQQTLRQHFSDCTVVTIAHRITSVLDSAMVLLLNHGLIKEYDSP 1133 (1156)
Q Consensus 1063 ---------ARALLr~~~ILiLDEaTS~LD~~te~~I~~~l~~~~~~~TvI~IaHrl~ti~~~D~I~Vl~~G~IvE~G~~ 1133 (1156)
|||++++|+|||||||||+||++||+.|++.|++. +++|+|+||||++++..||+|+||++|+|+|.|+|
T Consensus 614 gGQrQRialARall~~p~iliLDE~Ts~LD~~te~~i~~~L~~~-~~~T~IiitHr~~~~~~~D~i~~l~~G~i~~~G~~ 692 (708)
T TIGR01193 614 GGQKQRIALARALLTDSKVLILDESTSNLDTITEKKIVNNLLNL-QDKTIIFVAHRLSVAKQSDKIIVLDHGKIIEQGSH 692 (708)
T ss_pred HHHHHHHHHHHHHhhCCCEEEEeCccccCCHHHHHHHHHHHHHh-cCCEEEEEecchHHHHcCCEEEEEECCEEEEECCH
Confidence 89999999999999999999999999999999975 78999999999999999999999999999999999
Q ss_pred hHHhcCCCChHHHHHH
Q 037346 1134 TKLLENKSSSFAQLVA 1149 (1156)
Q Consensus 1134 ~eLl~~~~g~f~~l~~ 1149 (1156)
+||+++ +|.|++|++
T Consensus 693 ~~L~~~-~~~y~~l~~ 707 (708)
T TIGR01193 693 DELLDR-NGFYASLIH 707 (708)
T ss_pred HHHHhc-CCcHHHHhh
Confidence 999985 799999985
|
This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc. |
| >COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.3e-63 Score=570.69 Aligned_cols=464 Identities=23% Similarity=0.326 Sum_probs=349.3
Q ss_pred cEEEeeeEEEeCCCCC-CCccccceEEeeCCeEEEEEcCCCCChHHHHHHHhCCCCCC----CcEEEEcCe---------
Q 037346 357 AIEIIDGSFSWDFSSP-NPTLRNINLKVFHGMRVAVCGTVGSGKSSCLSCILGGVPKE----SGIIRLCGT--------- 422 (1156)
Q Consensus 357 ~i~~~~~~f~~~~~~~-~~~l~~i~l~i~~g~~~~ivG~~GsGKSTll~~i~g~~~~~----~G~i~~~g~--------- 422 (1156)
.++++|++..|..... ..+++|+||++.+||++||||+|||||||+.++|+|++++. +|+|.++|+
T Consensus 5 lL~V~nL~v~~~~~~~~~~~v~~vsf~v~~GE~lgIvGESGsGKSt~a~~i~gll~~~~~~~~G~I~~~g~dl~~l~~~~ 84 (539)
T COG1123 5 LLEVENLTVEFATDGGRVPAVRDVSFEVEPGEILGIVGESGSGKSTLALALMGLLPEGGRITSGEVILDGRDLLGLSERE 84 (539)
T ss_pred eEEEeceEEEEecCCcceeeeecceEEecCCcEEEEEcCCCCCHHHHHHHHhccCCCCCcccceEEEECCcchhcCCHHH
Confidence 6899999999976532 25999999999999999999999999999999999999987 799999883
Q ss_pred --------EEEEecCCc-CCC--ccHHHHhh----cCCC----CCHHHHHHHHHHhCCchhhhhCCCCCccccccCCCCC
Q 037346 423 --------KAYVAQSPW-IQS--GKIEENIL----FGKE----MDRERYERVLEACSLKKDLEVLPFGDQTIIGERGINL 483 (1156)
Q Consensus 423 --------~~~v~Q~~~-~~~--~ti~eni~----~~~~----~~~~~~~~~~~~~~l~~~~~~~~~g~~t~v~~~g~~L 483 (1156)
++|++|+|+ .+| .||.+-|. .... ...++..+.++..+|.+.... +....+|
T Consensus 85 ~r~~rg~~Ia~i~Q~p~~slnP~~tIg~Qi~E~~~~h~~~~~~ea~~~a~elL~~Vgl~~~~~~---------~~yPheL 155 (539)
T COG1123 85 MRKLRGKRIAMIFQDPMTSLNPVMTIGDQIREALRLHGKGSRAEARKRAVELLEQVGLPDPERR---------DRYPHQL 155 (539)
T ss_pred HHHhccccEEEEecCchhhcCchhhHHHHHHHHHHHhccccHHHHHHHHHHHHHHcCCCChhhh---------ccCCccc
Confidence 799999996 333 46665554 2221 123455667777888665433 2345799
Q ss_pred CHHHHHHHHHHHhhccCCCeeeeeCCCCCcCHHHHHHHHHHHHh---cCCCEEEEEccCCCcccc-CCEEEEEeCCeEEE
Q 037346 484 SGGQKQRIQIARPLYQDADIFLLDDPFSPVDDHTGAHLFKFCWV---SSSKTVIYATHQVEFLPA-ADLILVIKDGKITQ 559 (1156)
Q Consensus 484 SgGqkqRi~lAral~~~~~illlDep~s~lD~~~~~~i~~~~~~---~~~~tvi~vtH~~~~~~~-~d~i~~l~~G~i~~ 559 (1156)
|||||||+.||+||..+|++||+||||++||+.++.+|.+.+.. ..|.++|+||||+..+.+ ||+|+||++|+++|
T Consensus 156 SGG~rQRv~iAmALa~~P~LLIaDEPTTaLDvt~q~qIL~llk~l~~e~g~a~l~ITHDl~Vva~~aDrv~Vm~~G~iVE 235 (539)
T COG1123 156 SGGMRQRVMIAMALALKPKLLIADEPTTALDVTTQAQILDLLKDLQRELGMAVLFITHDLGVVAELADRVVVMYKGEIVE 235 (539)
T ss_pred CchHHHHHHHHHHHhCCCCEEEECCCccccCHHHHHHHHHHHHHHHHHcCcEEEEEcCCHHHHHHhcCeEEEEECCEEEE
Confidence 99999999999999999999999999999999999999886643 568999999999999875 99999999999999
Q ss_pred ccChHHHHhcCcc-hHHHH-HhhhhhccCCCCCCCCCcccccccccCCCCCCCcccchhcccccCCCCcccccCccCcch
Q 037346 560 AGKYSDILNSGTD-FMELV-GAHKQALSGLDSIDRGPVSERKSINKENDGTSTTNEIVNKEENKNFQSDDEAALPKGQLV 637 (1156)
Q Consensus 560 ~g~~~~l~~~~~~-~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 637 (1156)
.|+.++++++..+ |...+ .+.... .. ... .
T Consensus 236 ~G~~~~i~~~p~hpYT~~Ll~a~p~~-------------~~-------------------------~~~----------~ 267 (539)
T COG1123 236 TGPTEEILSNPQHPYTRGLLAAVPRL-------------GD-------------------------EKI----------I 267 (539)
T ss_pred ecCHHHHHhccCCcccHHHHhhCCCc-------------cc-------------------------ccc----------c
Confidence 9999999864321 11110 000000 00 000 0
Q ss_pred hHHHHhcCcccHHHHHHHHHHhccchHHHHHHHHHHHHHHHHhhhhhhhhhccccccccCCCCCchhhHHHHHHHHHHHH
Q 037346 638 QEEEREKGKVGFSVYWKYMTTAYGGVLVPFILLAQIIFQIFQIGSNYWMAWATPVAKDVNPAVGASTLIIVYVGAGYKTA 717 (1156)
Q Consensus 638 ~~e~~~~g~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 717 (1156)
... ..+.
T Consensus 268 ~~~--~~~~----------------------------------------------------------------------- 274 (539)
T COG1123 268 RLP--RRGP----------------------------------------------------------------------- 274 (539)
T ss_pred ccc--cccc-----------------------------------------------------------------------
Confidence 000 0000
Q ss_pred HHHHHHHHHHhccccccccccccccchhhhhcccccccchhhhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 037346 718 TQLFNKMHVCIFRAPMYFFDSTPSGRILNRVSENVKWADQSAADMDIPYDIGAFAFSMIQLLGIIVVMSLVAWQVLIVFV 797 (1156)
Q Consensus 718 ~~l~~~l~~~ll~~p~~ff~~~~~G~il~R~s~d~~~~d~~~~d~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~ 797 (1156)
.. . ..+..++.
T Consensus 275 ---------------~~--------------~-----~~ll~V~~----------------------------------- 285 (539)
T COG1123 275 ---------------LR--------------A-----EPLLSVRN----------------------------------- 285 (539)
T ss_pred ---------------cc--------------c-----CceeEeee-----------------------------------
Confidence 00 0 00000000
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHhhChHHHHHHhhccchhhhhhcchHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Q 037346 798 PVIATFIWYQQYYITSTRELSRLIGVCKAPVIQQFSETISGSTTIRSLDQELRFRDTNMKLIDEYSRPKFHIAGAMEWLR 877 (1156)
Q Consensus 798 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~e~l~Gi~tIra~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 877 (1156)
T Consensus 286 -------------------------------------------------------------------------------- 285 (539)
T COG1123 286 -------------------------------------------------------------------------------- 285 (539)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHHHHHHHHHHHHHcCCCccchHHHHHHHhHHHHHHHHhhcCCCCCcccccCCCCCCCCCCCCeEEEEEEEEEE
Q 037346 878 FCIDMLSSITFAFSLAFLISVPNGIIHPYKNLERKIISVERILQCACIPSEPALVIEATKPNNSRPSHGEVNIRHLQVRY 957 (1156)
Q Consensus 878 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~Ri~~~~~~~~e~~~~~~~~~~~~~~p~~g~I~~~~Vsf~Y 957 (1156)
+......+. .. ........-.++||||..
T Consensus 286 -----------------------------------------l~k~y~~~~---------~~-~~~~~~~~~Av~~VSf~l 314 (539)
T COG1123 286 -----------------------------------------LSKRYGSRK---------GL-FVRERGEVKAVDDVSFDL 314 (539)
T ss_pred -----------------------------------------eeeeecccc---------cc-ccccccceeeeeeeeeEe
Confidence 000000000 00 000001123789999999
Q ss_pred cCCCCceeeCCCCCCHHHHHHHHhhcccCCCceEEEcCee--CCCCChHHHhhcCeeeccccccc---cccchhccC-CC
Q 037346 958 APNLPLVLRGRTGSGKSTLIQTLFRIVESTAGHILIDGKD--ISLIGLHDLRTRLSIIPQDPTMF---EGTTRSNLD-PL 1031 (1156)
Q Consensus 958 ~~~~~~vL~G~SGsGKSTL~~lL~rl~~p~~G~I~idG~d--i~~i~~~~LR~~i~~VpQdp~LF---~gTIr~Nl~-~~ 1031 (1156)
.+++.++|+|+||||||||.++|+|+.+|++|+|.++|.| ++.-....+|+++-+|+|||+-. ..||+++|. |.
T Consensus 315 ~~GE~lglVGeSGsGKSTlar~i~gL~~P~~G~i~~~g~~~~~~~~~~~~~r~~~QmvFQdp~~SLnPr~tV~~~i~epL 394 (539)
T COG1123 315 REGETLGLVGESGSGKSTLARILAGLLPPSSGSIIFDGQDLDLTGGELRRLRRRIQMVFQDPYSSLNPRMTVGDILAEPL 394 (539)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEEeCcccccccchhhhhhhheEEEEeCcccccCccccHHHHHHhHH
Confidence 9999999999999999999999999999999999999977 34334566888999999999743 469999984 21
Q ss_pred ---CCC--C--HHHHHHHHHHcCCCh-HHHhhcCCcccc-------ccccccCCCEEEEecCCcCCCHHHHHHHHHHHHH
Q 037346 1032 ---EEH--A--DEQIWEALDKCQLGD-EVRKKKGKLDSQ-------GRVLLKKSKVLVLDEATASVDTATDNQIQQTLRQ 1096 (1156)
Q Consensus 1032 ---~~~--~--deei~~al~~~~l~~-~i~~lp~gl~s~-------ARALLr~~~ILiLDEaTS~LD~~te~~I~~~l~~ 1096 (1156)
... . .+.+.+.++.++|.. +....|..+.-+ ||||..+|++||+|||||+||+-+.+.|.+.|.+
T Consensus 395 ~~~~~~~~~~~~~rv~~ll~~VgL~~~~l~ryP~elSGGQrQRvaIARALa~~P~lli~DEp~SaLDvsvqa~VlnLl~~ 474 (539)
T COG1123 395 RIHGGGSGAERRARVAELLELVGLPPEFLDRYPHELSGGQRQRVAIARALALEPKLLILDEPVSALDVSVQAQVLNLLKD 474 (539)
T ss_pred hhhcccchHHHHHHHHHHHHHcCCCHHHHhcCchhcCcchhHHHHHHHHHhcCCCEEEecCCccccCHHHHHHHHHHHHH
Confidence 111 1 345888899999987 677778777644 8999999999999999999999999999999987
Q ss_pred hcC--CceEEEeecCcccccc-cCEEEEEeCcEEeeecChhHHhcCCCChHHHHHHH
Q 037346 1097 HFS--DCTVVTIAHRITSVLD-SAMVLLLNHGLIKEYDSPTKLLENKSSSFAQLVAE 1150 (1156)
Q Consensus 1097 ~~~--~~TvI~IaHrl~ti~~-~D~I~Vl~~G~IvE~G~~~eLl~~~~g~f~~l~~~ 1150 (1156)
+.+ +.|.|+|+|+++.++. ||||+||++|+|||.|+.++..+++...|.+..-+
T Consensus 475 lq~e~g~t~lfISHDl~vV~~i~drv~vm~~G~iVE~G~~~~v~~~p~h~Ytr~L~~ 531 (539)
T COG1123 475 LQEELGLTYLFISHDLAVVRYIADRVAVMYDGRIVEEGPTEKVFENPQHPYTRKLLA 531 (539)
T ss_pred HHHHhCCEEEEEeCCHHHHHhhCceEEEEECCeEEEeCCHHHHhcCCCChHHHHHHH
Confidence 653 6899999999999986 99999999999999999999999988888876654
|
|
| >TIGR01842 type_I_sec_PrtD type I secretion system ABC transporter, PrtD family | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.3e-61 Score=587.14 Aligned_cols=482 Identities=21% Similarity=0.258 Sum_probs=367.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccc----ch-hhHH-----HHHHHHHHHHHHHHHHHHHHHHH
Q 037346 78 SAWQEILFIAILALLYTLATYVGPYLIDNFVQYLNGRQAFE----YE-GYVL-----CLSERHWFFQVQQFGIRFRATLF 147 (1156)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~p~ll~~~i~~~~~~~~~~----~~-g~~l-----~~~~~~~~~~~~~~~~~~r~~l~ 147 (1156)
.+++.++..+++.++..++.++.|++++.++|.+....... +. ++++ .++.....+...+.+.++...++
T Consensus 3 ~~k~~~~~~~~~~~~~~~~~l~~p~~~~~iid~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr 82 (544)
T TIGR01842 3 KNKSTFIIVGLFSFVINILMLAPPLYMLQVYDRVLTSGSVPTLLMLTVLALGLYLFLGLLDALRSFVLVRIGEKLDGALN 82 (544)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45667788888899999999999999999999764222111 11 1111 22222334456778889999999
Q ss_pred HHHHHHHhcCCccccCCCCHHHHHHHHHHHHHH------H---------------HHHHHHHHHHHHHHHHHHHHHHHHH
Q 037346 148 AMIYNKGLTLSGQAKQGNTSGEIINLIAVDAER------A---------------LLILYKKLGLASIATLLATAIVMLA 206 (1156)
Q Consensus 148 ~~i~~k~l~l~~~~~~~~~~g~i~nl~s~D~~~------~---------------~~ll~~~lg~~~l~~~~~~~~~~~~ 206 (1156)
..+|+|.++++... .+...+.+++|++. . +.+++..-++.+++.++.+++++++
T Consensus 83 ~~~~~~ll~~~~~~-----~~~~~~~~~~d~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~li~l~~~~l~~~i 157 (544)
T TIGR01842 83 QPIFAASFSATLRR-----GKIDGLQALRDLDQLRQFLTGPGLFAFFDAPWMPIYLLVCFLLHPWIGILALGGAVVLVGL 157 (544)
T ss_pred HHHHHHHhcCcccC-----ccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 99999999998632 24557777888877 0 0001100011111111111222223
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH------HHHHHH---HHHHHHHHHHHHHHHHH--HH
Q 037346 207 NFPLGRLREKFQDKFMETKDRRIKATSEILRNMRILKLQGWELK------KNETAW---LKKSVYTEAMISFFCWG--AP 275 (1156)
Q Consensus 207 ~~~~~~~~~~~~~~~~~~~d~r~~~~~e~l~~i~~IK~~~~e~r------~~e~~~---~~~~~~~~~~~~~~~~~--~~ 275 (1156)
.....+..++..++.++..+++.+.+.|.++|+++||.|++|.+ +...+. ..+.....+....+... ..
T Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 237 (544)
T TIGR01842 158 ALLNNRATKKPLKEATEASIRANNLADSALRNAEVIEAMGMMGNLTKRWGRFHSKYLSAQSAASDRAGMLSNLSKYFRIV 237 (544)
T ss_pred HHHhhHHHHHHHHHHHHHHHHHhhHHHHHHhcHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344556666777888888999999999999999999998811 111111 11111111111111111 11
Q ss_pred HHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCccccccCCCCCCC
Q 037346 276 TFVSVVTFGSCILLGIPLESGMILSALTTFKILQEPIYYLPESISMMIQAKVPLDRIASFLCLEGLQTDVLEKMPRGNSD 355 (1156)
Q Consensus 276 ~~~~~~~f~~~~~~~~~lt~~~~ft~l~~~~~l~~pl~~l~~~~~~~~~a~~s~~Ri~~fl~~~~~~~~~~~~~~~~~~~ 355 (1156)
..+.+++++.+.+..+.+|+|.+++++.++..+..|+..++..+..+.+++++.+|+.++++.++..... . +.....
T Consensus 238 ~~~~~~~~g~~l~~~g~it~g~l~a~~~~~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~l~~~~~~~~~-~--~~~~~~ 314 (544)
T TIGR01842 238 LQSLVLGLGAYLAIDGEITPGMMIAGSILVGRALAPIDGAIGGWKQFSGARQAYKRLNELLANYPSRDPA-M--PLPEPE 314 (544)
T ss_pred HHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCccccCC-C--CCCCCC
Confidence 2234556888888889999999999999999999999999999999999999999999999765432211 1 111123
Q ss_pred ccEEEeeeEEEeCCCCCCCccccceEEeeCCeEEEEEcCCCCChHHHHHHHhCCCCCCCcEEEEcC-------------e
Q 037346 356 TAIEIIDGSFSWDFSSPNPTLRNINLKVFHGMRVAVCGTVGSGKSSCLSCILGGVPKESGIIRLCG-------------T 422 (1156)
Q Consensus 356 ~~i~~~~~~f~~~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKSTll~~i~g~~~~~~G~i~~~g-------------~ 422 (1156)
+.++++|++|+|+.. ++++|+|+||++++|+.++|+||||||||||+++|+|+++|++|+|.++| .
T Consensus 315 ~~i~~~~v~~~y~~~-~~~~l~~~~~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~i~~~~~~~~~~~ 393 (544)
T TIGR01842 315 GHLSVENVTIVPPGG-KKPTLRGISFRLQAGEALAIIGPSGSGKSTLARLIVGIWPPTSGSVRLDGADLKQWDRETFGKH 393 (544)
T ss_pred CeEEEEEEEEEcCCC-CccccccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEehhhCCHHHHhhh
Confidence 469999999999742 35799999999999999999999999999999999999999999999998 3
Q ss_pred EEEEecCCcCCCccHHHHhhcCCC-CCHHHHHHHHHHhCCchhhhhCCCCCccccccCCCCCCHHHHHHHHHHHhhccCC
Q 037346 423 KAYVAQSPWIQSGKIEENILFGKE-MDRERYERVLEACSLKKDLEVLPFGDQTIIGERGINLSGGQKQRIQIARPLYQDA 501 (1156)
Q Consensus 423 ~~~v~Q~~~~~~~ti~eni~~~~~-~~~~~~~~~~~~~~l~~~~~~~~~g~~t~v~~~g~~LSgGqkqRi~lAral~~~~ 501 (1156)
++||||+|++|++|++|||.++.+ .+++++.++++.++++++++.+|+|++|.+|++|.+||||||||++||||++++|
T Consensus 394 i~~v~q~~~lf~~ti~~Ni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~gl~t~~~~~g~~LSgGq~qrl~lARall~~~ 473 (544)
T TIGR01842 394 IGYLPQDVELFPGTVAENIARFGENADPEKIIEAAKLAGVHELILRLPDGYDTVIGPGGATLSGGQRQRIALARALYGDP 473 (544)
T ss_pred eEEecCCcccccccHHHHHhccCCCCCHHHHHHHHHHhChHHHHHhCccccccccCCCcCCCCHHHHHHHHHHHHHhcCC
Confidence 799999999999999999996654 7888999999999999999999999999999999999999999999999999999
Q ss_pred CeeeeeCCCCCcCHHHHHHHHHHHHhc--CCCEEEEEccCCCccccCCEEEEEeCCeEEEccChHHHHh
Q 037346 502 DIFLLDDPFSPVDDHTGAHLFKFCWVS--SSKTVIYATHQVEFLPAADLILVIKDGKITQAGKYSDILN 568 (1156)
Q Consensus 502 ~illlDep~s~lD~~~~~~i~~~~~~~--~~~tvi~vtH~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~ 568 (1156)
+++|||||||+||+++++.+.+.+... +++|+|++||+++.+..||+|++|++|++++.|+++++++
T Consensus 474 ~ililDEpts~LD~~~~~~i~~~l~~~~~~~~tvi~ith~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~ 542 (544)
T TIGR01842 474 KLVVLDEPNSNLDEEGEQALANAIKALKARGITVVVITHRPSLLGCVDKILVLQDGRIARFGERDEVLA 542 (544)
T ss_pred CEEEEeCCccccCHHHHHHHHHHHHHHhhCCCEEEEEeCCHHHHHhCCEEEEEECCEEEeeCCHHHHhh
Confidence 999999999999999999998876543 5799999999999888899999999999999999998864
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. |
| >PRK10790 putative multidrug transporter membrane\ATP-binding components; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.9e-62 Score=602.21 Aligned_cols=431 Identities=24% Similarity=0.359 Sum_probs=343.6
Q ss_pred HHHHHHHHHHHHHHHHhccccccccccccccchhhhhcccccccchhhhcccchHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 037346 712 AGYKTATQLFNKMHVCIFRAPMYFFDSTPSGRILNRVSENVKWADQSAADMDIPYDIGAFAFSMIQLLGIIVVMSLVAWQ 791 (1156)
Q Consensus 712 ~~~~~~~~l~~~l~~~ll~~p~~ff~~~~~G~il~R~s~d~~~~d~~~~d~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 791 (1156)
.+.+...++|.+++++++++|.+||+++++|++++|++ .|...++..+...+..++..++.+++.++++++.+|+
T Consensus 92 ~~~~~~~~lr~~l~~~l~~~~~~~~~~~~~g~~~~~~~-----~d~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 166 (592)
T PRK10790 92 AAVGVVQQLRTDVMDAALRQPLSAFDTQPVGQLISRVT-----NDTEVIRDLYVTVVATVLRSAALIGAMLVAMFSLDWR 166 (592)
T ss_pred HHHHHHHHHHHHHHHHHHcCCHHHhCCCChhHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566788999999999999999999999999999999 7777777777777777778888888888888889998
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhChHHHHHHhhccchhhhhhcchHHHHHHHHHHHHHHHhhHHHHHHH
Q 037346 792 VLIVFVPVIATFIWYQQYYITSTRELSRLIGVCKAPVIQQFSETISGSTTIRSLDQELRFRDTNMKLIDEYSRPKFHIAG 871 (1156)
Q Consensus 792 l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~e~l~Gi~tIra~~~e~~~~~~~~~~~~~~~~~~~~~~~ 871 (1156)
++++++..+++.+++...+.+..+...+......+...+++.|+++|+.+||+|+.++++.+++.+..++..+.......
T Consensus 167 l~li~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 246 (592)
T PRK10790 167 MALVAIMIFPAVLVVMVIYQRYSTPIVRRVRAYLADINDGFNEVINGMSVIQQFRQQARFGERMGEASRSHYMARMQTLR 246 (592)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 87655444333333444444444555555556677889999999999999999999999999999887776665544433
Q ss_pred HHHHH-HHHHHHHHHHHHHHHH-HH----------------------HHHcCCCccchHHHHHHHhHHHHHHHHhhcCCC
Q 037346 872 AMEWL-RFCIDMLSSITFAFSL-AF----------------------LISVPNGIIHPYKNLERKIISVERILQCACIPS 927 (1156)
Q Consensus 872 ~~~~~-~~~l~~~~~~~~~~~~-~~----------------------~~~~~~~~~~~~~~~~~~~~s~~Ri~~~~~~~~ 927 (1156)
...+. .....++..+...++. .. +..+.........+++....+.+|+.++.+.++
T Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~is~g~l~a~~~~~~~~~~pl~~l~~~~~~~~~~~~s~~ri~~~l~~~~ 326 (592)
T PRK10790 247 LDGFLLRPLLSLFSALILCGLLMLFGFSASGTIEVGVLYAFISYLGRLNEPLIELTTQQSMLQQAVVAGERVFELMDGPR 326 (592)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 33221 1111111111100000 00 000011111223567788899999999987654
Q ss_pred CCcccccCCCCCCCCCCCCeEEEEEEEEEEcCC--------------CCceeeCCCCCCHHHHHHHHhhcccCCCceEEE
Q 037346 928 EPALVIEATKPNNSRPSHGEVNIRHLQVRYAPN--------------LPLVLRGRTGSGKSTLIQTLFRIVESTAGHILI 993 (1156)
Q Consensus 928 e~~~~~~~~~~~~~~p~~g~I~~~~Vsf~Y~~~--------------~~~vL~G~SGsGKSTL~~lL~rl~~p~~G~I~i 993 (1156)
++... . ..++..+.|+|+||+|+|+++ +.++|+|+||||||||+++|+|+|+|++|+|.+
T Consensus 327 ~~~~~---~---~~~~~~~~i~~~~v~f~y~~~~~il~~i~l~i~~Ge~iaIvG~SGsGKSTLl~lL~gl~~p~~G~I~i 400 (592)
T PRK10790 327 QQYGN---D---DRPLQSGRIDIDNVSFAYRDDNLVLQNINLSVPSRGFVALVGHTGSGKSTLASLLMGYYPLTEGEIRL 400 (592)
T ss_pred ccCCC---C---ccCCCCCeEEEEEEEEEeCCCCceeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCceEEE
Confidence 43211 1 112345689999999999643 334567999999999999999999999999999
Q ss_pred cCeeCCCCChHHHhhcCeeeccccccccccchhccCCCCCCCHHHHHHHHHHcCCChHHHhhcCCcccc-----------
Q 037346 994 DGKDISLIGLHDLRTRLSIIPQDPTMFEGTTRSNLDPLEEHADEQIWEALDKCQLGDEVRKKKGKLDSQ----------- 1062 (1156)
Q Consensus 994 dG~di~~i~~~~LR~~i~~VpQdp~LF~gTIr~Nl~~~~~~~deei~~al~~~~l~~~i~~lp~gl~s~----------- 1062 (1156)
||.|+++++.+.+|++|+||||||++|+||||+||.++++.+|+++++|++++|+++++.++|+||||.
T Consensus 401 dg~~i~~~~~~~l~~~i~~v~Q~~~lF~~Ti~~NI~~~~~~~d~~i~~a~~~~gl~~~i~~lp~Gldt~i~e~g~~LSGG 480 (592)
T PRK10790 401 DGRPLSSLSHSVLRQGVAMVQQDPVVLADTFLANVTLGRDISEEQVWQALETVQLAELARSLPDGLYTPLGEQGNNLSVG 480 (592)
T ss_pred CCEEhhhCCHHHHHhheEEEccCCccccchHHHHHHhCCCCCHHHHHHHHHHcCcHHHHHhccccccccccCCCCCCCHH
Confidence 999999999999999999999999999999999999988888999999999999999999999999975
Q ss_pred -------ccccccCCCEEEEecCCcCCCHHHHHHHHHHHHHhcCCceEEEeecCcccccccCEEEEEeCcEEeeecChhH
Q 037346 1063 -------GRVLLKKSKVLVLDEATASVDTATDNQIQQTLRQHFSDCTVVTIAHRITSVLDSAMVLLLNHGLIKEYDSPTK 1135 (1156)
Q Consensus 1063 -------ARALLr~~~ILiLDEaTS~LD~~te~~I~~~l~~~~~~~TvI~IaHrl~ti~~~D~I~Vl~~G~IvE~G~~~e 1135 (1156)
||||+++|+|||||||||+||++|++.|++.|++..++||+|+||||++++..||+|+||++|+++|.|+|+|
T Consensus 481 qrQRialARaLl~~~~illlDEpts~LD~~t~~~i~~~l~~~~~~~tvIivtHr~~~l~~~D~ii~l~~G~i~~~G~~~~ 560 (592)
T PRK10790 481 QKQLLALARVLVQTPQILILDEATANIDSGTEQAIQQALAAVREHTTLVVIAHRLSTIVEADTILVLHRGQAVEQGTHQQ 560 (592)
T ss_pred HHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHhCCCEEEEEecchHHHHhCCEEEEEECCEEEEEcCHHH
Confidence 8999999999999999999999999999999999888999999999999999999999999999999999999
Q ss_pred HhcCCCChHHHHHHHHhcc
Q 037346 1136 LLENKSSSFAQLVAEYTSS 1154 (1156)
Q Consensus 1136 Ll~~~~g~f~~l~~~~~~~ 1154 (1156)
|+++ ++.|++|++.+..+
T Consensus 561 L~~~-~~~y~~l~~~~~~~ 578 (592)
T PRK10790 561 LLAA-QGRYWQMYQLQLAG 578 (592)
T ss_pred HHhC-CCHHHHHHHHHhhh
Confidence 9986 69999999976644
|
|
| >TIGR03796 NHPM_micro_ABC1 NHPM bacteriocin system ABC transporter, peptidase/ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.2e-62 Score=615.50 Aligned_cols=428 Identities=21% Similarity=0.305 Sum_probs=348.0
Q ss_pred HHHHHHHHHHHHHHHHhccccccccccccccchhhhhcccccccchhhhcccchHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 037346 712 AGYKTATQLFNKMHVCIFRAPMYFFDSTPSGRILNRVSENVKWADQSAADMDIPYDIGAFAFSMIQLLGIIVVMSLVAWQ 791 (1156)
Q Consensus 712 ~~~~~~~~l~~~l~~~ll~~p~~ff~~~~~G~il~R~s~d~~~~d~~~~d~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 791 (1156)
.+.+....++.++++++++.|++||+++++|++++|++ .| ..+...+...+..++..++.+++.+++++.++|+
T Consensus 221 ~~~~~~~~l~~~~~~~ll~l~~~~~~~~~~g~~~~r~~-----~~-~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 294 (710)
T TIGR03796 221 LQIKLAVGMSARFLWHILRLPVRFFAQRHAGDIASRVQ-----LN-DQVAEFLSGQLATTALDAVMLVFYALLMLLYDPV 294 (710)
T ss_pred HHHHHHHHHHHHHHHHHHcCCHHHHcCCcccHHHHHhh-----hH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45688889999999999999999999999999999998 44 3455555556666777777888888888999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhChHHHHHHhhccchhhhhhcchHHHHHHHHHHHHHHHhhHHHHHHH
Q 037346 792 VLIVFVPVIATFIWYQQYYITSTRELSRLIGVCKAPVIQQFSETISGSTTIRSLDQELRFRDTNMKLIDEYSRPKFHIAG 871 (1156)
Q Consensus 792 l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~e~l~Gi~tIra~~~e~~~~~~~~~~~~~~~~~~~~~~~ 871 (1156)
++++++.++++++++..++.+..++..+......+...+.+.|+++|+++||++|.|+.+.++|.+...+..+.......
T Consensus 295 l~li~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~i~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~ 374 (710)
T TIGR03796 295 LTLIGIAFAAINVLALQLVSRRRVDANRRLQQDAGKLTGVAISGLQSIETLKASGLESDFFSRWAGYQAKLLNAQQELGV 374 (710)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 98887776666666666666666666666677778899999999999999999999999999999888887777666655
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH---HH---------------------HcCCCccchHHHHHHHhHHHHHHHHhhcCCC
Q 037346 872 AMEWLRFCIDMLSSITFAFSLAF---LI---------------------SVPNGIIHPYKNLERKIISVERILQCACIPS 927 (1156)
Q Consensus 872 ~~~~~~~~l~~~~~~~~~~~~~~---~~---------------------~~~~~~~~~~~~~~~~~~s~~Ri~~~~~~~~ 927 (1156)
...+.......+..+..++++.+ .+ .+.........++.....+++|+.++++.++
T Consensus 375 ~~~~~~~~~~~i~~~~~~~il~~g~~~v~~g~lt~G~lva~~~l~~~~~~p~~~l~~~~~~~~~~~~~~~ri~~il~~~~ 454 (710)
T TIGR03796 375 LTQILGVLPTLLTSLNSALILVVGGLRVMEGQLTIGMLVAFQSLMSSFLEPVNNLVGFGGTLQELEGDLNRLDDVLRNPV 454 (710)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 55555444443332222111111 00 0011111223567778889999999998776
Q ss_pred CCcccccC--C-CCCCCCCCCCeEEEEEEEEEEcCCC---------------CceeeCCCCCCHHHHHHHHhhcccCCCc
Q 037346 928 EPALVIEA--T-KPNNSRPSHGEVNIRHLQVRYAPNL---------------PLVLRGRTGSGKSTLIQTLFRIVESTAG 989 (1156)
Q Consensus 928 e~~~~~~~--~-~~~~~~p~~g~I~~~~Vsf~Y~~~~---------------~~vL~G~SGsGKSTL~~lL~rl~~p~~G 989 (1156)
|.+..... . .....++..|.|+|+||+|+|+++. .++++|+||||||||+++|+|+|+|++|
T Consensus 455 e~~~~~~~~~~~~~~~~~~~~~~I~~~~vsf~y~~~~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLlklL~gl~~p~~G 534 (710)
T TIGR03796 455 DPLLEEEEAPAAGSEPSPRLSGYVELRNITFGYSPLEPPLIENFSLTLQPGQRVALVGGSGSGKSTIAKLVAGLYQPWSG 534 (710)
T ss_pred ccccccccccccccccCCCCCCeEEEEEEEEecCCCCCCcccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCc
Confidence 64321100 0 0011133467899999999997532 3456699999999999999999999999
Q ss_pred eEEEcCeeCCCCChHHHhhcCeeeccccccccccchhccCCCC-CCCHHHHHHHHHHcCCChHHHhhcCCcccc------
Q 037346 990 HILIDGKDISLIGLHDLRTRLSIIPQDPTMFEGTTRSNLDPLE-EHADEQIWEALDKCQLGDEVRKKKGKLDSQ------ 1062 (1156)
Q Consensus 990 ~I~idG~di~~i~~~~LR~~i~~VpQdp~LF~gTIr~Nl~~~~-~~~deei~~al~~~~l~~~i~~lp~gl~s~------ 1062 (1156)
+|.+||+|+++++.+++|++|+||||||++|+|||||||.+++ +.+|+++++|++.+++++++.++|+|+||.
T Consensus 535 ~I~idg~~i~~~~~~~lr~~i~~v~Q~~~lf~gTi~eNi~l~~~~~~~~~i~~al~~~~l~~~i~~lp~gl~t~i~e~G~ 614 (710)
T TIGR03796 535 EILFDGIPREEIPREVLANSVAMVDQDIFLFEGTVRDNLTLWDPTIPDADLVRACKDAAIHDVITSRPGGYDAELAEGGA 614 (710)
T ss_pred EEEECCEeHHHCCHHHHHhheeEEecCChhhhccHHHHhhCCCCCCCHHHHHHHHHHhCCHHHHHhCcCcccceeccCCC
Confidence 9999999999999999999999999999999999999999875 478999999999999999999999999975
Q ss_pred ------------ccccccCCCEEEEecCCcCCCHHHHHHHHHHHHHhcCCceEEEeecCcccccccCEEEEEeCcEEeee
Q 037346 1063 ------------GRVLLKKSKVLVLDEATASVDTATDNQIQQTLRQHFSDCTVVTIAHRITSVLDSAMVLLLNHGLIKEY 1130 (1156)
Q Consensus 1063 ------------ARALLr~~~ILiLDEaTS~LD~~te~~I~~~l~~~~~~~TvI~IaHrl~ti~~~D~I~Vl~~G~IvE~ 1130 (1156)
||||+++|+|||||||||+||++||+.|.+.|++ .++|+|+||||++++.+||||+|||+|+|+|.
T Consensus 615 ~LSGGQrQRiaLARall~~p~iliLDEptS~LD~~te~~i~~~l~~--~~~T~IiitHrl~~i~~~D~Iivl~~G~i~~~ 692 (710)
T TIGR03796 615 NLSGGQRQRLEIARALVRNPSILILDEATSALDPETEKIIDDNLRR--RGCTCIIVAHRLSTIRDCDEIIVLERGKVVQR 692 (710)
T ss_pred CCCHHHHHHHHHHHHHhhCCCEEEEECccccCCHHHHHHHHHHHHh--cCCEEEEEecCHHHHHhCCEEEEEeCCEEEEe
Confidence 8999999999999999999999999999999987 48999999999999999999999999999999
Q ss_pred cChhHHhcCCCChHHHHH
Q 037346 1131 DSPTKLLENKSSSFAQLV 1148 (1156)
Q Consensus 1131 G~~~eLl~~~~g~f~~l~ 1148 (1156)
|+|+||+++ +|.|++|+
T Consensus 693 G~~~~Ll~~-~~~y~~l~ 709 (710)
T TIGR03796 693 GTHEELWAV-GGAYARLI 709 (710)
T ss_pred cCHHHHHHc-CCcHHHHh
Confidence 999999975 78999987
|
This protein describes an multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHPM, Nitrile Hydratase Propeptide Microcin. |
| >PRK11160 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-61 Score=594.72 Aligned_cols=428 Identities=21% Similarity=0.289 Sum_probs=347.0
Q ss_pred HHHHHHHHHHHHHHHHhccccccccccccccchhhhhcccccccchhhhcccchHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 037346 712 AGYKTATQLFNKMHVCIFRAPMYFFDSTPSGRILNRVSENVKWADQSAADMDIPYDIGAFAFSMIQLLGIIVVMSLVAWQ 791 (1156)
Q Consensus 712 ~~~~~~~~l~~~l~~~ll~~p~~ff~~~~~G~il~R~s~d~~~~d~~~~d~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 791 (1156)
.+.++..++|.+++++++++|+.||++.++|++++|++ .|+..++..+...+..++..++.+++.+++++.++|+
T Consensus 87 ~~~~~~~~lR~~l~~~l~~~~~~~~~~~~~g~~~srl~-----~Dv~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 161 (574)
T PRK11160 87 ATFRVLTHLRVFTFSKLLPLSPAGLARYRQGDLLNRLV-----ADVDTLDHLYLRLISPLVAALVVILVLTIGLSFFDLT 161 (574)
T ss_pred HHHHHHHHHHHHHHHHhhccChHhhccCChhHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45677889999999999999999999999999999999 7777777777777778888888888888999999999
Q ss_pred HHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHhHhhChHHHHHHhhccchhhhhhcchHHHHHHHHHHHHHHHhhHHHHHH
Q 037346 792 VLIVFVPVIATF-IWYQQYYITSTRELSRLIGVCKAPVIQQFSETISGSTTIRSLDQELRFRDTNMKLIDEYSRPKFHIA 870 (1156)
Q Consensus 792 l~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~e~l~Gi~tIra~~~e~~~~~~~~~~~~~~~~~~~~~~ 870 (1156)
++++++.++++. ..+..++.+..+...+...+..+.+.+.+.|.++|+++||+|+.|+++.+++.+..++..+......
T Consensus 162 l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~ 241 (574)
T PRK11160 162 LALTLGGILLLLLLLLPLLFYRLGKKPGQDLTHLRAQYRVQLTEWLQGQAELTLFGAEDRYRQQLEQTEQQWLAAQRRQA 241 (574)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHCCHHHHHHcCChHHHHHHHHHHHHHHHHHHHHHH
Confidence 987654443332 2333445555566666667778889999999999999999999999999999999888877776665
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH------------------------cCCCccchHHHHHHHhHHHHHHHHhhcCC
Q 037346 871 GAMEWLRFCIDMLSSITFAFSLAFLIS------------------------VPNGIIHPYKNLERKIISVERILQCACIP 926 (1156)
Q Consensus 871 ~~~~~~~~~l~~~~~~~~~~~~~~~~~------------------------~~~~~~~~~~~~~~~~~s~~Ri~~~~~~~ 926 (1156)
....+......++..+..++++.+... +..........+.....+.+|+.++.+.+
T Consensus 242 ~~~~~~~~~~~~~~~~~~~~i~~~g~~~~~g~~t~g~l~a~~~~~~~~~~~~~~~l~~~~~~~~~~~~s~~ri~~ll~~~ 321 (574)
T PRK11160 242 NLTGLSQALMILANGLTVVLMLWLAAGGVGGNAQPGALIALFVFAALAAFEALMPVAGAFQHLGQVIASARRINEITEQK 321 (574)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 555444444333322211111100000 00011112245667788999999998876
Q ss_pred CCCcccccCCCCCCCCCCCCeEEEEEEEEEEcCCC---------------CceeeCCCCCCHHHHHHHHhhcccCCCceE
Q 037346 927 SEPALVIEATKPNNSRPSHGEVNIRHLQVRYAPNL---------------PLVLRGRTGSGKSTLIQTLFRIVESTAGHI 991 (1156)
Q Consensus 927 ~e~~~~~~~~~~~~~~p~~g~I~~~~Vsf~Y~~~~---------------~~vL~G~SGsGKSTL~~lL~rl~~p~~G~I 991 (1156)
++.... ... ...+..+.|+|+||+|+|+++. .++|+|+||||||||+++|+|+|+|++|+|
T Consensus 322 ~~~~~~--~~~--~~~~~~~~i~~~~v~f~y~~~~~~il~~i~~~i~~G~~~aivG~sGsGKSTL~~ll~g~~~p~~G~I 397 (574)
T PRK11160 322 PEVTFP--TTS--TAAADQVSLTLNNVSFTYPDQPQPVLKGLSLQIKAGEKVALLGRTGCGKSTLLQLLTRAWDPQQGEI 397 (574)
T ss_pred CCCCCC--ccc--CCCCCCCeEEEEEEEEECCCCCCcceecceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceE
Confidence 553211 000 1113357899999999996432 245669999999999999999999999999
Q ss_pred EEcCeeCCCCChHHHhhcCeeeccccccccccchhccCCCC-CCCHHHHHHHHHHcCCChHHHhhcCCcccc--------
Q 037346 992 LIDGKDISLIGLHDLRTRLSIIPQDPTMFEGTTRSNLDPLE-EHADEQIWEALDKCQLGDEVRKKKGKLDSQ-------- 1062 (1156)
Q Consensus 992 ~idG~di~~i~~~~LR~~i~~VpQdp~LF~gTIr~Nl~~~~-~~~deei~~al~~~~l~~~i~~lp~gl~s~-------- 1062 (1156)
++||+|+++++.+++|++|++|||||+||+|||+|||.+++ +.+|+++++|++.+++++++.+ |+||||.
T Consensus 398 ~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~ti~~Ni~~~~~~~~~~~i~~al~~~~l~~~i~~-p~GldT~vge~g~~L 476 (574)
T PRK11160 398 LLNGQPIADYSEAALRQAISVVSQRVHLFSATLRDNLLLAAPNASDEALIEVLQQVGLEKLLED-DKGLNAWLGEGGRQL 476 (574)
T ss_pred EECCEEhhhCCHHHHHhheeEEcccchhhcccHHHHhhcCCCccCHHHHHHHHHHcCCHHHHcC-ccccCchhcCCCCCC
Confidence 99999999999999999999999999999999999999875 4689999999999999999999 9999985
Q ss_pred ----------ccccccCCCEEEEecCCcCCCHHHHHHHHHHHHHhcCCceEEEeecCcccccccCEEEEEeCcEEeeecC
Q 037346 1063 ----------GRVLLKKSKVLVLDEATASVDTATDNQIQQTLRQHFSDCTVVTIAHRITSVLDSAMVLLLNHGLIKEYDS 1132 (1156)
Q Consensus 1063 ----------ARALLr~~~ILiLDEaTS~LD~~te~~I~~~l~~~~~~~TvI~IaHrl~ti~~~D~I~Vl~~G~IvE~G~ 1132 (1156)
|||++++|+|||||||||+||++||+.|++.|++..+++|+|+||||++++.+||+|+||++|+|+|.|+
T Consensus 477 SgGqrqRialARall~~~~ililDE~ts~lD~~t~~~i~~~l~~~~~~~tviiitHr~~~~~~~d~i~~l~~G~i~~~g~ 556 (574)
T PRK11160 477 SGGEQRRLGIARALLHDAPLLLLDEPTEGLDAETERQILELLAEHAQNKTVLMITHRLTGLEQFDRICVMDNGQIIEQGT 556 (574)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHcCCCEEEEEecChhHHHhCCEEEEEeCCeEEEeCC
Confidence 8999999999999999999999999999999999888999999999999999999999999999999999
Q ss_pred hhHHhcCCCChHHHHHHH
Q 037346 1133 PTKLLENKSSSFAQLVAE 1150 (1156)
Q Consensus 1133 ~~eLl~~~~g~f~~l~~~ 1150 (1156)
|+||+++ +|.|++|++.
T Consensus 557 ~~~l~~~-~g~y~~l~~~ 573 (574)
T PRK11160 557 HQELLAQ-QGRYYQLKQR 573 (574)
T ss_pred HHHHHhc-CcHHHHHHhh
Confidence 9999975 7999999863
|
|
| >COG4988 CydD ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-61 Score=554.02 Aligned_cols=430 Identities=21% Similarity=0.313 Sum_probs=350.2
Q ss_pred HHHHHHHHHHHHHHHHhccccccccccccccchhhhhcccccccchhhhcccchHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 037346 712 AGYKTATQLFNKMHVCIFRAPMYFFDSTPSGRILNRVSENVKWADQSAADMDIPYDIGAFAFSMIQLLGIIVVMSLVAWQ 791 (1156)
Q Consensus 712 ~~~~~~~~l~~~l~~~ll~~p~~ff~~~~~G~il~R~s~d~~~~d~~~~d~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 791 (1156)
++.++...+|.++++++.+.+..|-+..|+|++.+.+++. ++.++..+...+...+.+++..+.+++.+++.+|.
T Consensus 67 aa~~~~~~LR~~~l~~l~~~gp~~~~~~~~g~~atl~~eg-----ve~l~~Y~~ryLPq~~~~~ivp~~i~i~v~~~~w~ 141 (559)
T COG4988 67 AAAKVRASLRQLVLDKLAKLGPAFIAQKPAGSAATLALEG-----IEQLEPYYARYLPQMFLSAIVPLLILIAIFFFNWA 141 (559)
T ss_pred HHHHHHHHHHHHHHHHHHhCChhhhcCCCcchHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Confidence 4556677889999999999999999999999999999944 44445555566777778888888888888899998
Q ss_pred HHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhChHHHHHHhhccchhhhhhcchHHHHHHHHHHHHHHHhhHHHH
Q 037346 792 VLI---VFVPVIATFIWYQQYYITSTRELSRLIGVCKAPVIQQFSETISGSTTIRSLDQELRFRDTNMKLIDEYSRPKFH 868 (1156)
Q Consensus 792 l~l---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~e~l~Gi~tIra~~~e~~~~~~~~~~~~~~~~~~~~ 868 (1156)
.++ +++|++++++++.. ...+...+.+-.+...+.++|.|.++|+.|+|+|++.+...++..+...+..+..+.
T Consensus 142 aalIllit~PlIPlfMilvg---~~a~~~s~~~~~~~~~ls~~FLD~LrGL~TLr~f~~~~~~~~~i~~~se~fR~~TM~ 218 (559)
T COG4988 142 AALILLITAPLIPLFMILVG---LAAKDASEKQFSALARLSGHFLDRLRGLETLRAFGRTEATEERIRKDSEDFRKATMS 218 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHH---HHHhHHHHHHHHHHHHHHHHHHHHhcChHHHHHhcccHHHHHHHHHHHHHHHHHHHH
Confidence 654 45677766655432 233444445556677899999999999999999999999999999998888888888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH-HcCC-Cccch-----------------------HHHHHHHhHHHHHHHHhh
Q 037346 869 IAGAMEWLRFCIDMLSSITFAFSLAFLI-SVPN-GIIHP-----------------------YKNLERKIISVERILQCA 923 (1156)
Q Consensus 869 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~-~~~~-~~~~~-----------------------~~~~~~~~~s~~Ri~~~~ 923 (1156)
.......-+..++++..+.++++++++. .+.. |.++. +........+.+.+..+.
T Consensus 219 vLriAflSs~vLeffa~lsiAlvAv~~g~~ll~~G~ltl~~~l~~LiLAPEff~PlR~lGs~fH~~~~g~aa~d~i~~~l 298 (559)
T COG4988 219 VLRIAFLSSAVLEFFAYLSIALVAVYIGFRLLGEGDLTLFAGLFVLILAPEFFQPLRDLGSFFHAAAAGEAAADKLFTLL 298 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCccHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHh
Confidence 7777777777788877766655444321 1111 11111 133344466788888888
Q ss_pred cCCCCCcccccCCCCCCCCCCCCeEEEEEEEEEEcCCC--------------CceeeCCCCCCHHHHHHHHhhcccCCCc
Q 037346 924 CIPSEPALVIEATKPNNSRPSHGEVNIRHLQVRYAPNL--------------PLVLRGRTGSGKSTLIQTLFRIVESTAG 989 (1156)
Q Consensus 924 ~~~~e~~~~~~~~~~~~~~p~~g~I~~~~Vsf~Y~~~~--------------~~vL~G~SGsGKSTL~~lL~rl~~p~~G 989 (1156)
+.|.+.....+ .....|....++.++|++|+|+.+. ..+|+|+||||||||+++|+|+.+|++|
T Consensus 299 ~~~~~~~~~~~--~~~~~~~~~~ei~~~~l~~~y~~g~~~l~~l~~t~~~g~~talvG~SGaGKSTLl~lL~G~~~~~~G 376 (559)
T COG4988 299 ESPVATPGSGE--KAEVANEPPIEISLENLSFRYPDGKPALSDLNLTIKAGQLTALVGASGAGKSTLLNLLLGFLAPTQG 376 (559)
T ss_pred cCCCCCCCCcc--ccccccCCCceeeecceEEecCCCCcccCCceeEecCCcEEEEECCCCCCHHHHHHHHhCcCCCCCc
Confidence 76665432111 1112232234556669999997653 3467799999999999999999999999
Q ss_pred eEEEcCeeCCCCChHHHhhcCeeeccccccccccchhccCCCCC-CCHHHHHHHHHHcCCChHHHhhcCCcccc------
Q 037346 990 HILIDGKDISLIGLHDLRTRLSIIPQDPTMFEGTTRSNLDPLEE-HADEQIWEALDKCQLGDEVRKKKGKLDSQ------ 1062 (1156)
Q Consensus 990 ~I~idG~di~~i~~~~LR~~i~~VpQdp~LF~gTIr~Nl~~~~~-~~deei~~al~~~~l~~~i~~lp~gl~s~------ 1062 (1156)
+|.+||+|+++++.++||+++++|||+|+||+|||||||.++++ .+||||++|++++++.+++.. |+|+|+.
T Consensus 377 ~I~vng~~l~~l~~~~~~k~i~~v~Q~p~lf~gTireNi~l~~~~~s~e~i~~al~~a~l~~~v~~-p~GLdt~ige~G~ 455 (559)
T COG4988 377 EIRVNGIDLRDLSPEAWRKQISWVSQNPYLFAGTIRENILLARPDASDEEIIAALDQAGLLEFVPK-PDGLDTVIGEGGA 455 (559)
T ss_pred eEEECCccccccCHHHHHhHeeeeCCCCccccccHHHHhhccCCcCCHHHHHHHHHHhcHHHhhcC-CCcccchhccCCC
Confidence 99999999999999999999999999999999999999998876 679999999999999999999 9999965
Q ss_pred ------------ccccccCCCEEEEecCCcCCCHHHHHHHHHHHHHhcCCceEEEeecCcccccccCEEEEEeCcEEeee
Q 037346 1063 ------------GRVLLKKSKVLVLDEATASVDTATDNQIQQTLRQHFSDCTVVTIAHRITSVLDSAMVLLLNHGLIKEY 1130 (1156)
Q Consensus 1063 ------------ARALLr~~~ILiLDEaTS~LD~~te~~I~~~l~~~~~~~TvI~IaHrl~ti~~~D~I~Vl~~G~IvE~ 1130 (1156)
||||+++++++|||||||+||.|||+.|++.|.++++++|||+||||++.+.++|+|+|||+|+++|.
T Consensus 456 ~LSgGQ~QRlaLARAll~~~~l~llDEpTA~LD~etE~~i~~~l~~l~~~ktvl~itHrl~~~~~~D~I~vld~G~l~~~ 535 (559)
T COG4988 456 GLSGGQAQRLALARALLSPASLLLLDEPTAHLDAETEQIILQALQELAKQKTVLVITHRLEDAADADRIVVLDNGRLVEQ 535 (559)
T ss_pred CCCHHHHHHHHHHHHhcCCCCEEEecCCccCCCHhHHHHHHHHHHHHHhCCeEEEEEcChHHHhcCCEEEEecCCceecc
Confidence 89999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cChhHHhcCCCChHHHHHHHHhc
Q 037346 1131 DSPTKLLENKSSSFAQLVAEYTS 1153 (1156)
Q Consensus 1131 G~~~eLl~~~~g~f~~l~~~~~~ 1153 (1156)
|+|++|.++ +|.|++|+++++.
T Consensus 536 g~~~~L~~~-~~~y~~l~~~q~~ 557 (559)
T COG4988 536 GTHEELSEK-QGLYANLLKQQEG 557 (559)
T ss_pred CCHHHHhhc-CcHHHHHHHHHhc
Confidence 999999975 7999999998764
|
|
| >TIGR02857 CydD thiol reductant ABC exporter, CydD subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.3e-60 Score=579.81 Aligned_cols=470 Identities=23% Similarity=0.283 Sum_probs=355.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CCCccc----chhhH-H-----HHHHHHHHHHHHHHHHHHHHHHHH
Q 037346 80 WQEILFIAILALLYTLATYVGPYLIDNFVQYLN-GRQAFE----YEGYV-L-----CLSERHWFFQVQQFGIRFRATLFA 148 (1156)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~p~ll~~~i~~~~-~~~~~~----~~g~~-l-----~~~~~~~~~~~~~~~~~~r~~l~~ 148 (1156)
|+.++..+++.++..++..+.|+++++++|.+. +..... ..+++ + .++.....+...+.+.++...++.
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iid~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~ 81 (529)
T TIGR02857 2 RRALALLGLLGALGALLIIAQAWLLARVIDGLISAGEPLAELLPALGALALAVLLRALLGWLGERAAARAAAAVKSQLRE 81 (529)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 556777888899999999999999999999873 322211 11111 1 122222334556778888899999
Q ss_pred HHHHHHhcCCccccCCCCHHHHHHHHHHHHHH--------------H-------HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 037346 149 MIYNKGLTLSGQAKQGNTSGEIINLIAVDAER--------------A-------LLILYKKLGLASIATLLATAIVMLAN 207 (1156)
Q Consensus 149 ~i~~k~l~l~~~~~~~~~~g~i~nl~s~D~~~--------------~-------~~ll~~~lg~~~l~~~~~~~~~~~~~ 207 (1156)
.+|+|.++++...+++.++|++++++++|++. . +++++..-.+.+++.++.+++...+.
T Consensus 82 ~l~~~l~~~~~~~~~~~~~g~~~~~l~~di~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~l~~~~l~~~~~ 161 (529)
T TIGR02857 82 RLLAAVAALGPGWLQGRPSGELATLALEGVEALDGYFARYLPQLVLAVIIPLAILAAVFPADWISGLILLLTAPLIPIFM 161 (529)
T ss_pred HHHHHHHhCCchhhccCChHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 99999999999889999999999999999987 0 00000000011111111111122222
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH------HHHHHHHH---HHHHHHHHHHHHHHHHHH--
Q 037346 208 FPLGRLREKFQDKFMETKDRRIKATSEILRNMRILKLQGWELK------KNETAWLK---KSVYTEAMISFFCWGAPT-- 276 (1156)
Q Consensus 208 ~~~~~~~~~~~~~~~~~~d~r~~~~~e~l~~i~~IK~~~~e~r------~~e~~~~~---~~~~~~~~~~~~~~~~~~-- 276 (1156)
..+.+...+..++.++..++..+.+.|.++|+++||.|++|.+ +...+..+ +..........+......
T Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (529)
T TIGR02857 162 ILIGWAAQAAARKQWAALSRLSGHFLDRLRGLPTLKLFGRAKAQAAAIARSSEEYRERTMRVLRIAFLSSAVLELFATLS 241 (529)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445556666777778888889999999999999999999811 11001111 011111111111111111
Q ss_pred HHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCccccccCCCCCCCc
Q 037346 277 FVSVVTFGSCILLGIPLESGMILSALTTFKILQEPIYYLPESISMMIQAKVPLDRIASFLCLEGLQTDVLEKMPRGNSDT 356 (1156)
Q Consensus 277 ~~~~~~f~~~~~~~~~lt~~~~ft~l~~~~~l~~pl~~l~~~~~~~~~a~~s~~Ri~~fl~~~~~~~~~~~~~~~~~~~~ 356 (1156)
.+..+.++.+.+..+.+|.|.+++++.+...+..|+..+...+..+.+++++++|+.++++.++..... ...+ ....+
T Consensus 242 ~~~~~~~~~~~~~~g~~t~g~~~~~~~~~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~ll~~~~~~~~~-~~~~-~~~~~ 319 (529)
T TIGR02857 242 VALVAVYIGFRLLAGDLDLATGLFVLLLAPEFYLPLRQLGADYHARADGVAAAEALFAVLDAPRPLAGK-APVT-AAPAP 319 (529)
T ss_pred HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccCCC-cCCC-CCCCC
Confidence 111223444555577899999999999999999999999999999999999999999999854322111 1111 11224
Q ss_pred cEEEeeeEEEeCCCCCCCccccceEEeeCCeEEEEEcCCCCChHHHHHHHhCCCCCCCcEEEEcCe-------------E
Q 037346 357 AIEIIDGSFSWDFSSPNPTLRNINLKVFHGMRVAVCGTVGSGKSSCLSCILGGVPKESGIIRLCGT-------------K 423 (1156)
Q Consensus 357 ~i~~~~~~f~~~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKSTll~~i~g~~~~~~G~i~~~g~-------------~ 423 (1156)
.|+++|++|+|+.. ++++|+|+||+|++|++++|+||||||||||+++|+|+++|++|+|.++|. +
T Consensus 320 ~i~~~~v~f~y~~~-~~~il~~i~l~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~I~~~g~~i~~~~~~~lr~~i 398 (529)
T TIGR02857 320 SLEFSGLSVAYPGR-RAPALRPVSFTVPPGERVALVGPSGAGKSTLLNLLLGFVDPTEGSIAVNGVPLADADADSWRDQI 398 (529)
T ss_pred eEEEEEEEEECCCC-CcccccceeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEehhhCCHHHHHhhe
Confidence 69999999999743 357999999999999999999999999999999999999999999999984 7
Q ss_pred EEEecCCcCCCccHHHHhhcCCC-CCHHHHHHHHHHhCCchhhhhCCCCCccccccCCCCCCHHHHHHHHHHHhhccCCC
Q 037346 424 AYVAQSPWIQSGKIEENILFGKE-MDRERYERVLEACSLKKDLEVLPFGDQTIIGERGINLSGGQKQRIQIARPLYQDAD 502 (1156)
Q Consensus 424 ~~v~Q~~~~~~~ti~eni~~~~~-~~~~~~~~~~~~~~l~~~~~~~~~g~~t~v~~~g~~LSgGqkqRi~lAral~~~~~ 502 (1156)
+||+|+|++|++||+|||.++.+ .++++..++++.+++.++++.+|+|++|.+|++|.+||||||||++||||++++|+
T Consensus 399 ~~v~Q~~~lf~~ti~~Ni~~~~~~~~~~~i~~a~~~~~l~~~i~~lp~Gldt~v~e~g~~LSgGq~qri~laRal~~~~~ 478 (529)
T TIGR02857 399 AWVPQHPFLFAGTIAENIRLARPDASDAEIRRALERAGLDEFVAALPQGLDTLIGEGGAGLSGGQAQRLALARAFLRDAP 478 (529)
T ss_pred EEEcCCCcccCcCHHHHHhccCCCCCHHHHHHHHHHcCcHHHHHhCcccccchhccccccCCHHHHHHHHHHHHHhcCCC
Confidence 99999999999999999999864 67889999999999999999999999999999999999999999999999999999
Q ss_pred eeeeeCCCCCcCHHHHHHHHHHHHh-cCCCEEEEEccCCCccccCCEEEEE
Q 037346 503 IFLLDDPFSPVDDHTGAHLFKFCWV-SSSKTVIYATHQVEFLPAADLILVI 552 (1156)
Q Consensus 503 illlDep~s~lD~~~~~~i~~~~~~-~~~~tvi~vtH~~~~~~~~d~i~~l 552 (1156)
++|||||||+||+++++.+++.+.. .+++|+|+||||++.++.||+|++|
T Consensus 479 ililDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~~d~i~~l 529 (529)
T TIGR02857 479 LLLLDEPTAHLDAETEALVTEALRALAQGRTVLLVTHRLALAERADRIVVL 529 (529)
T ss_pred EEEEeCcccccCHHHHHHHHHHHHHhcCCCEEEEEecCHHHHHhCCEEEeC
Confidence 9999999999999999999887755 4789999999999999999999985
|
Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD |
| >PRK10261 glutathione transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.3e-62 Score=601.45 Aligned_cols=482 Identities=23% Similarity=0.325 Sum_probs=345.3
Q ss_pred ccEEEeeeEEEeCCCC-CCCccccceEEeeCCeEEEEEcCCCCChHHHHHHHhCCCCCCCcEEEEcC-------------
Q 037346 356 TAIEIIDGSFSWDFSS-PNPTLRNINLKVFHGMRVAVCGTVGSGKSSCLSCILGGVPKESGIIRLCG------------- 421 (1156)
Q Consensus 356 ~~i~~~~~~f~~~~~~-~~~~l~~i~l~i~~g~~~~ivG~~GsGKSTll~~i~g~~~~~~G~i~~~g------------- 421 (1156)
..++++|+++.|+... +.++|+|+||++++||+++|+|+||||||||+++|+|+++|++|+|.++|
T Consensus 11 ~~l~v~~l~~~y~~~~~~~~~l~~is~~v~~Ge~~~lvG~nGsGKSTLl~~l~Gll~p~~G~i~~~g~~~~~~~~~~~~~ 90 (623)
T PRK10261 11 DVLAVENLNIAFMQEQQKIAAVRNLSFSLQRGETLAIVGESGSGKSVTALALMRLLEQAGGLVQCDKMLLRRRSRQVIEL 90 (623)
T ss_pred ceEEEeceEEEecCCCCceeEEEeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCCeEEEECCEEecccccccccc
Confidence 4699999999996322 34799999999999999999999999999999999999999999998765
Q ss_pred --------------eEEEEecCC--cCCC-ccHHHHhhcCCC----CC----HHHHHHHHHHhCCchhhhhCCCCCcccc
Q 037346 422 --------------TKAYVAQSP--WIQS-GKIEENILFGKE----MD----RERYERVLEACSLKKDLEVLPFGDQTII 476 (1156)
Q Consensus 422 --------------~~~~v~Q~~--~~~~-~ti~eni~~~~~----~~----~~~~~~~~~~~~l~~~~~~~~~g~~t~v 476 (1156)
.++||+|+| .++. .||.||+.++.. .+ .++..++++.++|.+. ....
T Consensus 91 ~~~~~~~~~~~r~~~ig~v~Q~~~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~--------~~~~ 162 (623)
T PRK10261 91 SEQSAAQMRHVRGADMAMIFQEPMTSLNPVFTVGEQIAESIRLHQGASREEAMVEAKRMLDQVRIPEA--------QTIL 162 (623)
T ss_pred ccCCHHHHHHHhCCCEEEEEeCchhhcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHCCCCCh--------hhHH
Confidence 379999998 3544 699999987521 22 2355566777777421 0112
Q ss_pred ccCCCCCCHHHHHHHHHHHhhccCCCeeeeeCCCCCcCHHHHHHHHHHHHh---cCCCEEEEEccCCCccc-cCCEEEEE
Q 037346 477 GERGINLSGGQKQRIQIARPLYQDADIFLLDDPFSPVDDHTGAHLFKFCWV---SSSKTVIYATHQVEFLP-AADLILVI 552 (1156)
Q Consensus 477 ~~~g~~LSgGqkqRi~lAral~~~~~illlDep~s~lD~~~~~~i~~~~~~---~~~~tvi~vtH~~~~~~-~~d~i~~l 552 (1156)
.....+|||||||||+|||||+.+|++|||||||++||+.+++.+.+.+.. ..|+|+|+|||+++.+. .||+|++|
T Consensus 163 ~~~~~~LSgGq~QRv~iA~AL~~~P~lLllDEPt~~LD~~~~~~l~~ll~~l~~~~g~tvi~itHdl~~~~~~adri~vl 242 (623)
T PRK10261 163 SRYPHQLSGGMRQRVMIAMALSCRPAVLIADEPTTALDVTIQAQILQLIKVLQKEMSMGVIFITHDMGVVAEIADRVLVM 242 (623)
T ss_pred hCCCccCCHHHHHHHHHHHHHhCCCCEEEEeCCCCccCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEe
Confidence 345678999999999999999999999999999999999999988876543 23899999999999875 59999999
Q ss_pred eCCeEEEccChHHHHhcCc-chH-HHHHhhhhhccCCCCCCCCCcccccccccCCCCCCCcccchhcccccCCCCccccc
Q 037346 553 KDGKITQAGKYSDILNSGT-DFM-ELVGAHKQALSGLDSIDRGPVSERKSINKENDGTSTTNEIVNKEENKNFQSDDEAA 630 (1156)
Q Consensus 553 ~~G~i~~~g~~~~l~~~~~-~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 630 (1156)
++|++++.|+++++..... .+. .+.... +.... . .. ..
T Consensus 243 ~~G~i~~~g~~~~~~~~~~~~~~~~l~~~~-------------~~~~~---~------------------~~------~~ 282 (623)
T PRK10261 243 YQGEAVETGSVEQIFHAPQHPYTRALLAAV-------------PQLGA---M------------------KG------LD 282 (623)
T ss_pred eCCeecccCCHHHhhcCCCChhhhhhhhcc-------------Ccccc---c------------------cc------cc
Confidence 9999999999988764321 111 000000 00000 0 00 00
Q ss_pred CccCcchhHHHHhcCcccHHHHHHHHHHhccchHHHHHHHHHHHHHHHHhhhhhhhhhccccccccCCCCCchhhHHHHH
Q 037346 631 LPKGQLVQEEEREKGKVGFSVYWKYMTTAYGGVLVPFILLAQIIFQIFQIGSNYWMAWATPVAKDVNPAVGASTLIIVYV 710 (1156)
Q Consensus 631 ~~~~~~~~~e~~~~g~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 710 (1156)
.+ ......+. .. ...
T Consensus 283 ~~-~~~~~~~~-~~-----------------------------------------------------~~~---------- 297 (623)
T PRK10261 283 YP-RRFPLISL-EH-----------------------------------------------------PAK---------- 297 (623)
T ss_pred CC-cccccccc-cc-----------------------------------------------------ccc----------
Confidence 00 00000000 00 000
Q ss_pred HHHHHHHHHHHHHHHHHhccccccccccccccchhhhhcccccccchhhhcccchHHHHHHHHHHHHHHHHHHHHHHHHH
Q 037346 711 GAGYKTATQLFNKMHVCIFRAPMYFFDSTPSGRILNRVSENVKWADQSAADMDIPYDIGAFAFSMIQLLGIIVVMSLVAW 790 (1156)
Q Consensus 711 ~~~~~~~~~l~~~l~~~ll~~p~~ff~~~~~G~il~R~s~d~~~~d~~~~d~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 790 (1156)
..|..+....+.++.
T Consensus 298 -------------------~~~~~~~~~~~~~~~---------------------------------------------- 312 (623)
T PRK10261 298 -------------------QEPPIEQDTVVDGEP---------------------------------------------- 312 (623)
T ss_pred -------------------cCcccccccccCCCc----------------------------------------------
Confidence 000000000000000
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhChHHHHHHhhccchhhhhhcchHHHHHHHHHHHHHHHhhHHHHHH
Q 037346 791 QVLIVFVPVIATFIWYQQYYITSTRELSRLIGVCKAPVIQQFSETISGSTTIRSLDQELRFRDTNMKLIDEYSRPKFHIA 870 (1156)
Q Consensus 791 ~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~e~l~Gi~tIra~~~e~~~~~~~~~~~~~~~~~~~~~~ 870 (1156)
T Consensus 313 -------------------------------------------------------------------------------- 312 (623)
T PRK10261 313 -------------------------------------------------------------------------------- 312 (623)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccchHHHHHHHhHHHHHHHHhhcCCCCCcccccCCCCCCC-CC-CCCeE
Q 037346 871 GAMEWLRFCIDMLSSITFAFSLAFLISVPNGIIHPYKNLERKIISVERILQCACIPSEPALVIEATKPNNS-RP-SHGEV 948 (1156)
Q Consensus 871 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~Ri~~~~~~~~e~~~~~~~~~~~~~-~p-~~g~I 948 (1156)
+.++.++ .......... +. ..+.-
T Consensus 313 ------------------------------------------------~L~~~~l------~~~y~~~~~~~~~~~~~~~ 338 (623)
T PRK10261 313 ------------------------------------------------ILQVRNL------VTRFPLRSGLLNRVTREVH 338 (623)
T ss_pred ------------------------------------------------eEEEeee------EEEEcCCCccccccCCceE
Confidence 0000000 0000000000 00 01124
Q ss_pred EEEEEEEEEcCCCCceeeCCCCCCHHHHHHHHhhcccCCCceEEEcCeeCCCCChH---HHhhcCeeeccccc--ccc-c
Q 037346 949 NIRHLQVRYAPNLPLVLRGRTGSGKSTLIQTLFRIVESTAGHILIDGKDISLIGLH---DLRTRLSIIPQDPT--MFE-G 1022 (1156)
Q Consensus 949 ~~~~Vsf~Y~~~~~~vL~G~SGsGKSTL~~lL~rl~~p~~G~I~idG~di~~i~~~---~LR~~i~~VpQdp~--LF~-g 1022 (1156)
.++||||...+++.++|.|+||||||||+++|+|+.+|++|+|.++|.++...+.. .+|++|+||||+|. ++. -
T Consensus 339 ~l~~vs~~i~~Ge~~~lvG~nGsGKSTLlk~i~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~~~~i~~v~Q~~~~~l~~~~ 418 (623)
T PRK10261 339 AVEKVSFDLWPGETLSLVGESGSGKSTTGRALLRLVESQGGEIIFNGQRIDTLSPGKLQALRRDIQFIFQDPYASLDPRQ 418 (623)
T ss_pred EEeeeEeEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCcEEEECCEECCcCCHHHHHHhcCCeEEEecCchhhcCCCC
Confidence 79999999999999999999999999999999999999999999999999887643 45778999999983 665 5
Q ss_pred cchhccCCC----CCCC----HHHHHHHHHHcCCC-hHHHhhcCCcccc-------ccccccCCCEEEEecCCcCCCHHH
Q 037346 1023 TTRSNLDPL----EEHA----DEQIWEALDKCQLG-DEVRKKKGKLDSQ-------GRVLLKKSKVLVLDEATASVDTAT 1086 (1156)
Q Consensus 1023 TIr~Nl~~~----~~~~----deei~~al~~~~l~-~~i~~lp~gl~s~-------ARALLr~~~ILiLDEaTS~LD~~t 1086 (1156)
|+.+|+... +... ++++.++|+.+++. +.....|..|..+ ||||+.+|+|||||||||+||..+
T Consensus 419 tv~~~l~~~~~~~~~~~~~~~~~~~~~~L~~~gL~~~~~~~~~~~LSgGqrQRv~iAraL~~~p~llllDEPts~LD~~~ 498 (623)
T PRK10261 419 TVGDSIMEPLRVHGLLPGKAAAARVAWLLERVGLLPEHAWRYPHEFSGGQRQRICIARALALNPKVIIADEAVSALDVSI 498 (623)
T ss_pred CHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCCHHHhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHH
Confidence 999998531 1111 25678999999996 5667777777655 899999999999999999999999
Q ss_pred HHHHHHHHHHhcC--CceEEEeecCcccccc-cCEEEEEeCcEEeeecChhHHhcCCCChHHH-HHH
Q 037346 1087 DNQIQQTLRQHFS--DCTVVTIAHRITSVLD-SAMVLLLNHGLIKEYDSPTKLLENKSSSFAQ-LVA 1149 (1156)
Q Consensus 1087 e~~I~~~l~~~~~--~~TvI~IaHrl~ti~~-~D~I~Vl~~G~IvE~G~~~eLl~~~~g~f~~-l~~ 1149 (1156)
.+.|.+.|+++.+ +.|||+|||+++.+.. ||||+||++|+|+|.|++++++.++...|.+ ++.
T Consensus 499 ~~~i~~ll~~l~~~~g~tvi~isHdl~~v~~~~dri~vl~~G~iv~~g~~~~i~~~p~~~~~~~l~~ 565 (623)
T PRK10261 499 RGQIINLLLDLQRDFGIAYLFISHDMAVVERISHRVAVMYLGQIVEIGPRRAVFENPQHPYTRKLMA 565 (623)
T ss_pred HHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEecCHHHHhcCCCCHHHHHHHh
Confidence 9999999988643 7899999999998875 9999999999999999999999766655654 444
|
|
| >KOG0057 consensus Mitochondrial Fe/S cluster exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.5e-60 Score=531.91 Aligned_cols=483 Identities=23% Similarity=0.315 Sum_probs=365.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCCccc---------chhhHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 037346 89 LALLYTLATYVGPYLIDNFVQYLNGRQAFE---------YEGYVL-----CLSERHWFFQVQQFGIRFRATLFAMIYNKG 154 (1156)
Q Consensus 89 ~~~~~~~~~~~~p~ll~~~i~~~~~~~~~~---------~~g~~l-----~~~~~~~~~~~~~~~~~~r~~l~~~i~~k~ 154 (1156)
+.+..-++....|++++..++.+...+..+ ..+|++ .+..-.-.+....+..++-......+|++.
T Consensus 38 ~l~~aK~l~v~vp~~~~~~id~l~~~~~~~a~~~~~~~~~~~y~iar~~s~~F~el~~~vfa~v~q~~iR~~~~~vf~~~ 117 (591)
T KOG0057|consen 38 LLLGAKILNVQVPFIFKLIIDGLNDADGNPAVLSTITALLAGYGIARLGSSVFNELRNFVFAKVAQRVIRDSSSDVFRHL 117 (591)
T ss_pred HHHhhhHhheehHHHHHHHHhhhhhcccCcchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333345677788999999999885211111 122322 111111123345666777788888999999
Q ss_pred hcCCccccCCCCHHHHHHHHHHHHHH---------------------HHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHH
Q 037346 155 LTLSGQAKQGNTSGEIINLIAVDAER---------------------ALLILYKKLGLASIATLL-ATAIVMLANFPLGR 212 (1156)
Q Consensus 155 l~l~~~~~~~~~~g~i~nl~s~D~~~---------------------~~~ll~~~lg~~~l~~~~-~~~~~~~~~~~~~~ 212 (1156)
+.++...+.+..+|++.+.|..-... +...+++..|.+.....+ .+.....++..+..
T Consensus 118 ~~ld~~~~~~~~tG~l~~~idRgsraI~~vl~~~V~~i~p~~~~i~~v~~~l~~~~Ga~~~li~~~~v~~Y~a~Ti~~t~ 197 (591)
T KOG0057|consen 118 MSLDLSFFLSRGTGALNRIIDRGSRAISFVLSAMVFNIIPTLFEIALVSGILYYKFGAAFALITLGTVGAYAAFTIVVTR 197 (591)
T ss_pred HhhhHHhhcCCCcchHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHhheeEEeehh
Confidence 99999999999999988777543332 112344555543332221 11222222334456
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH-----HHHHHHHH--HHH--HHHHHHHHHHHHHHHHHHH
Q 037346 213 LREKFQDKFMETKDRRIKATSEILRNMRILKLQGWELKKNE-----TAWLKKSV--YTE--AMISFFCWGAPTFVSVVTF 283 (1156)
Q Consensus 213 ~~~~~~~~~~~~~d~r~~~~~e~l~~i~~IK~~~~e~r~~e-----~~~~~~~~--~~~--~~~~~~~~~~~~~~~~~~f 283 (1156)
+..++++++.++.++....+-+.|.|-.+||.|+-|.++.+ ++...... +.. ++..+. .-..|....++
T Consensus 198 ~Rn~fR~~~N~Adn~as~~~~dsL~Nye~VKsfNnE~~Ea~~y~~~l~~~~~~~~~~~~sl~~lnfg--Q~~iFsv~~~~ 275 (591)
T KOG0057|consen 198 WRNRFRKAMNNADNSASRRAYDSLINYEIVKSFNNEEYEASRYDGSLKTYERAGLKYSSSLAFLNFG--QKAIFSVALTF 275 (591)
T ss_pred HHHHHHHHHHhhhhHHHHHHHHHHhhHHHHHHcccHHHHHHHHHHHHHHHHHhhhhHHhHHHHHHHH--HHHHHHHHHHH
Confidence 67788999999999999999999999999999999944332 22222111 111 111111 11112122222
Q ss_pred HHHH----HhCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCccccccCCCCCCCccEE
Q 037346 284 GSCI----LLGIPLESGMILSALTTFKILQEPIYYLPESISMMIQAKVPLDRIASFLCLEGLQTDVLEKMPRGNSDTAIE 359 (1156)
Q Consensus 284 ~~~~----~~~~~lt~~~~ft~l~~~~~l~~pl~~l~~~~~~~~~a~~s~~Ri~~fl~~~~~~~~~~~~~~~~~~~~~i~ 359 (1156)
..++ ...+.+|.+...-..+++.++..|+..+...+..+.++..-++-.....+..+.... ...+....++.|+
T Consensus 276 im~l~~~gi~~~~mtvgdlv~~n~l~~qL~~~l~~Lg~vyr~~~q~l~Dm~~~~~l~~~~~~i~~--~~~~i~~~~~~I~ 353 (591)
T KOG0057|consen 276 IMVLGSNGIAAGKMTVGDLVMVNSLLFQLSLPLNFLGSVYRELRQALTDMRTLFILLEVDEDIQE--AALPIELFGGSIE 353 (591)
T ss_pred HHHHHhhhhhhccccccchhhHHHHHHHHHhHHHHHHHHHHHHHHHHHhHHHHHhhhhhhhhhhh--ccCCcccCCCcEE
Confidence 2222 345679999999999999999999999999999999988877776655443221111 0112223445699
Q ss_pred EeeeEEEeCCCCCCCccccceEEeeCCeEEEEEcCCCCChHHHHHHHhCCCCCCCcEEEEcCe-------------EEEE
Q 037346 360 IIDGSFSWDFSSPNPTLRNINLKVFHGMRVAVCGTVGSGKSSCLSCILGGVPKESGIIRLCGT-------------KAYV 426 (1156)
Q Consensus 360 ~~~~~f~~~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKSTll~~i~g~~~~~~G~i~~~g~-------------~~~v 426 (1156)
|+||+|+|+ +++++|+++||+|++||.+||+|+|||||||++++|+++++ .+|+|++||. ||||
T Consensus 354 F~dV~f~y~--~k~~iL~gvsf~I~kGekVaIvG~nGsGKSTilr~LlrF~d-~sG~I~IdG~dik~~~~~SlR~~Ig~V 430 (591)
T KOG0057|consen 354 FDDVHFSYG--PKRKVLKGVSFTIPKGEKVAIVGSNGSGKSTILRLLLRFFD-YSGSILIDGQDIKEVSLESLRQSIGVV 430 (591)
T ss_pred EEeeEEEeC--CCCceecceeEEecCCCEEEEECCCCCCHHHHHHHHHHHhc-cCCcEEECCeeHhhhChHHhhhheeEe
Confidence 999999997 45679999999999999999999999999999999999999 9999999994 7999
Q ss_pred ecCCcCCCccHHHHhhcCCC-CCHHHHHHHHHHhCCchhhhhCCCCCccccccCCCCCCHHHHHHHHHHHhhccCCCeee
Q 037346 427 AQSPWIQSGKIEENILFGKE-MDRERYERVLEACSLKKDLEVLPFGDQTIIGERGINLSGGQKQRIQIARPLYQDADIFL 505 (1156)
Q Consensus 427 ~Q~~~~~~~ti~eni~~~~~-~~~~~~~~~~~~~~l~~~~~~~~~g~~t~v~~~g~~LSgGqkqRi~lAral~~~~~ill 505 (1156)
||+..||++||.+||.+|.+ ..+++..++++..++++-+.++|+|++|.|||+|..|||||||||+||||+++||+|++
T Consensus 431 PQd~~LFndTIl~NI~YGn~sas~eeV~e~~k~a~~hd~i~~l~~GY~T~VGerG~~LSGGekQrvslaRa~lKda~Il~ 510 (591)
T KOG0057|consen 431 PQDSVLFNDTILYNIKYGNPSASDEEVVEACKRAGLHDVISRLPDGYQTLVGERGLMLSGGEKQRVSLARAFLKDAPILL 510 (591)
T ss_pred CCcccccchhHHHHhhcCCCCcCHHHHHHHHHHcCcHHHHHhccccchhhHhhcccccccchHHHHHHHHHHhcCCCeEE
Confidence 99999999999999999986 56788888899999999999999999999999999999999999999999999999999
Q ss_pred eeCCCCCcCHHHHHHHHHHHHh-cCCCEEEEEccCCCccccCCEEEEEeCCeEEEccChHHHHhcCcchHHHHH
Q 037346 506 LDDPFSPVDDHTGAHLFKFCWV-SSSKTVIYATHQVEFLPAADLILVIKDGKITQAGKYSDILNSGTDFMELVG 578 (1156)
Q Consensus 506 lDep~s~lD~~~~~~i~~~~~~-~~~~tvi~vtH~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~~~~~~~~~~ 578 (1156)
+|||||+||.++++.+++.+.. ..+||+|+|.||+++++.||+|+++++|++.+.|+|+|++...+.|.+++.
T Consensus 511 ~DEaTS~LD~~TE~~i~~~i~~~~~~rTvI~IvH~l~ll~~~DkI~~l~nG~v~e~gth~ell~~s~~~~~~w~ 584 (591)
T KOG0057|consen 511 LDEATSALDSETEREILDMIMDVMSGRTVIMIVHRLDLLKDFDKIIVLDNGTVKEYGTHSELLAPSELYADLWT 584 (591)
T ss_pred ecCcccccchhhHHHHHHHHHHhcCCCeEEEEEecchhHhcCCEEEEEECCeeEEeccHHHHhhhhhHHHHHhc
Confidence 9999999999999999998766 789999999999999999999999999999999999999997666777654
|
|
| >PRK11176 lipid transporter ATP-binding/permease protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-60 Score=590.76 Aligned_cols=431 Identities=21% Similarity=0.324 Sum_probs=353.8
Q ss_pred HHHHHHHHHHHHHHHHhccccccccccccccchhhhhcccccccchhhhcccchHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 037346 712 AGYKTATQLFNKMHVCIFRAPMYFFDSTPSGRILNRVSENVKWADQSAADMDIPYDIGAFAFSMIQLLGIIVVMSLVAWQ 791 (1156)
Q Consensus 712 ~~~~~~~~l~~~l~~~ll~~p~~ff~~~~~G~il~R~s~d~~~~d~~~~d~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 791 (1156)
.+.+....++.++++++++.|..+|++.+.|++++|++ .|+..+...+...+..++..++.+++.+++++.++|+
T Consensus 92 ~~~~~~~~lr~~~~~~l~~~~~~~~~~~~~g~~~~~~~-----~d~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 166 (582)
T PRK11176 92 VSGKVVMTMRRRLFGHMMGMPVSFFDKQSTGTLLSRIT-----YDSEQVASSSSGALITVVREGASIIGLFIMMFYYSWQ 166 (582)
T ss_pred HHHHHHHHHHHHHHHHHHcCCHHHhCCCCccHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34577788999999999999999999999999999999 7777777666666777888888888888888999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhChHHHHHHhhccchhhhhhcchHHHHHHHHHHHHHHHhhHHHHHHH
Q 037346 792 VLIVFVPVIATFIWYQQYYITSTRELSRLIGVCKAPVIQQFSETISGSTTIRSLDQELRFRDTNMKLIDEYSRPKFHIAG 871 (1156)
Q Consensus 792 l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~e~l~Gi~tIra~~~e~~~~~~~~~~~~~~~~~~~~~~~ 871 (1156)
++++++..+++..++..++.+..++..+......+...+++.|.++|+++||+|+.++.+.+++.+..+...+...+...
T Consensus 167 l~l~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 246 (582)
T PRK11176 167 LSLILIVIAPIVSIAIRVVSKRFRNISKNMQNTMGQVTTSAEQMLKGHKEVLIFGGQEVETKRFDKVSNRMRQQGMKMVS 246 (582)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHhCcCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88776666666556666666666666666667788899999999999999999999999999999999988887777666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH-HHHcCCC-----------------------ccchHHHHHHHhHHHHHHHHhhcCCC
Q 037346 872 AMEWLRFCIDMLSSITFAFSLAF-LISVPNG-----------------------IIHPYKNLERKIISVERILQCACIPS 927 (1156)
Q Consensus 872 ~~~~~~~~l~~~~~~~~~~~~~~-~~~~~~~-----------------------~~~~~~~~~~~~~s~~Ri~~~~~~~~ 927 (1156)
...+......++..+...+++.+ ......+ .......+.....+.+|+.++.+.++
T Consensus 247 ~~~~~~~~~~~~~~~~~~~i~~~g~~~~~~g~is~g~~~~~~~~~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~~~~~~ 326 (582)
T PRK11176 247 ASSISDPIIQLIASLALAFVLYAASFPSVMDTLTAGTITVVFSSMIALMRPLKSLTNVNAQFQRGMAACQTLFAILDLEQ 326 (582)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 65555554444433222111111 0000111 11122566777888999999887665
Q ss_pred CCcccccCCCCCCCCCCCCeEEEEEEEEEEcCCC---------------CceeeCCCCCCHHHHHHHHhhcccCCCceEE
Q 037346 928 EPALVIEATKPNNSRPSHGEVNIRHLQVRYAPNL---------------PLVLRGRTGSGKSTLIQTLFRIVESTAGHIL 992 (1156)
Q Consensus 928 e~~~~~~~~~~~~~~p~~g~I~~~~Vsf~Y~~~~---------------~~vL~G~SGsGKSTL~~lL~rl~~p~~G~I~ 992 (1156)
+.+.. . ....+..+.|+|+||+|+|+++. .++|+|+||||||||+++|+|+|+|++|+|+
T Consensus 327 ~~~~~---~--~~~~~~~~~i~~~~vsf~y~~~~~~il~~i~l~i~~G~~~aIvG~sGsGKSTLl~ll~gl~~p~~G~I~ 401 (582)
T PRK11176 327 EKDEG---K--RVIERAKGDIEFRNVTFTYPGKEVPALRNINFKIPAGKTVALVGRSGSGKSTIANLLTRFYDIDEGEIL 401 (582)
T ss_pred cCCCC---C--cCCCCCCCeEEEEEEEEecCCCCCccccCceEEeCCCCEEEEECCCCCCHHHHHHHHHhccCCCCceEE
Confidence 53211 1 11123456799999999996532 2456799999999999999999999999999
Q ss_pred EcCeeCCCCChHHHhhcCeeeccccccccccchhccCCCC--CCCHHHHHHHHHHcCCChHHHhhcCCcccc--------
Q 037346 993 IDGKDISLIGLHDLRTRLSIIPQDPTMFEGTTRSNLDPLE--EHADEQIWEALDKCQLGDEVRKKKGKLDSQ-------- 1062 (1156)
Q Consensus 993 idG~di~~i~~~~LR~~i~~VpQdp~LF~gTIr~Nl~~~~--~~~deei~~al~~~~l~~~i~~lp~gl~s~-------- 1062 (1156)
+||+|+++++.+++|++|+||||||++|+|||||||.+++ +++|++++++++.+++++++.++|+|+||.
T Consensus 402 i~g~~i~~~~~~~~~~~i~~v~Q~~~lf~~Ti~~Ni~~~~~~~~~~~~i~~al~~~~l~~~i~~lp~Gldt~ig~~g~~L 481 (582)
T PRK11176 402 LDGHDLRDYTLASLRNQVALVSQNVHLFNDTIANNIAYARTEQYSREQIEEAARMAYAMDFINKMDNGLDTVIGENGVLL 481 (582)
T ss_pred ECCEEhhhcCHHHHHhhceEEccCceeecchHHHHHhcCCCCCCCHHHHHHHHHHhCcHHHHHhcccccCceeCCCCCcC
Confidence 9999999999999999999999999999999999999864 368999999999999999999999999975
Q ss_pred ----------ccccccCCCEEEEecCCcCCCHHHHHHHHHHHHHhcCCceEEEeecCcccccccCEEEEEeCcEEeeecC
Q 037346 1063 ----------GRVLLKKSKVLVLDEATASVDTATDNQIQQTLRQHFSDCTVVTIAHRITSVLDSAMVLLLNHGLIKEYDS 1132 (1156)
Q Consensus 1063 ----------ARALLr~~~ILiLDEaTS~LD~~te~~I~~~l~~~~~~~TvI~IaHrl~ti~~~D~I~Vl~~G~IvE~G~ 1132 (1156)
||||+++|+|||||||||+||++||+.|.+.|.+..+++|+|+||||++++..||+|++|++|+|+|.|+
T Consensus 482 SGGqrQRi~LARall~~~~ililDEptsaLD~~t~~~i~~~l~~~~~~~tvI~VtHr~~~~~~~D~Ii~l~~g~i~e~g~ 561 (582)
T PRK11176 482 SGGQRQRIAIARALLRDSPILILDEATSALDTESERAIQAALDELQKNRTSLVIAHRLSTIEKADEILVVEDGEIVERGT 561 (582)
T ss_pred CHHHHHHHHHHHHHHhCCCEEEEECccccCCHHHHHHHHHHHHHHhCCCEEEEEecchHHHHhCCEEEEEECCEEEEeCC
Confidence 8999999999999999999999999999999999888999999999999999999999999999999999
Q ss_pred hhHHhcCCCChHHHHHHHHhc
Q 037346 1133 PTKLLENKSSSFAQLVAEYTS 1153 (1156)
Q Consensus 1133 ~~eLl~~~~g~f~~l~~~~~~ 1153 (1156)
|++|+++ ++.|++|++++.+
T Consensus 562 ~~~l~~~-~~~y~~l~~~~~~ 581 (582)
T PRK11176 562 HAELLAQ-NGVYAQLHKMQFG 581 (582)
T ss_pred HHHHHhC-CChHHHHHHHHhc
Confidence 9999985 6899999986643
|
|
| >COG4987 CydC ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-59 Score=525.57 Aligned_cols=502 Identities=23% Similarity=0.306 Sum_probs=360.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CCC--cccc-------hhhHH--HHHHHHHHHHHHHH
Q 037346 71 LAKVLFFSAWQEILFIAILALLYTLATYVGPYLIDNFVQYLN-GRQ--AFEY-------EGYVL--CLSERHWFFQVQQF 138 (1156)
Q Consensus 71 l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~p~ll~~~i~~~~-~~~--~~~~-------~g~~l--~~~~~~~~~~~~~~ 138 (1156)
+++.+++ .|+.+++++++.++..+....-=.+-+++|..-. .+. .+.. .++.+ +...+.-...+...
T Consensus 7 ~i~l~~~-~~~~l~Lgi~l~~~t~lasigLl~lSGwfisasAiag~~~~f~~~~p~a~VR~~aI~Rt~~RY~ERlvsH~A 85 (573)
T COG4987 7 YLRLYKR-HKFGLLLGIVLAILTLLASIGLLTLSGWFISASAIAGLAYIFNVMLPSAGVRGLAILRTAARYVERLVSHDA 85 (573)
T ss_pred HHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHH
Confidence 3443444 6667777777766666555554445555554321 111 0000 00111 11111112233445
Q ss_pred HHHHHHHHHHHHHHHHhcCCccccCCCCHHHHHHHHHHHHHH----------------------HHHHHHHHHHHHHHHH
Q 037346 139 GIRFRATLFAMIYNKGLTLSGQAKQGNTSGEIINLIAVDAER----------------------ALLILYKKLGLASIAT 196 (1156)
Q Consensus 139 ~~~~r~~l~~~i~~k~l~l~~~~~~~~~~g~i~nl~s~D~~~----------------------~~~ll~~~lg~~~l~~ 196 (1156)
..++-+.++-.+|+|....++.......+|+++|++..|++. .+.+-+..++.+.+.+
T Consensus 86 tfrvL~~lRv~~f~kl~p~sp~~~~r~r~gdLL~RLvaDVd~Ld~lyLRvi~P~~~a~~~~~~~~i~L~f~~~~~Alll~ 165 (573)
T COG4987 86 TFRVLSALRVRLFEKLEPLSPALLLRYRSGDLLNRLVADVDALDNLYLRVIAPAVVALVLIAVVTIGLSFFSIPLALLLG 165 (573)
T ss_pred HHHHHHHHHHHHHHhhccCChHHHHhcChHhHHHHHHhhHHHHhhHHHHHHhhHHHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 678889999999999999998888889999999999999998 0111133444445555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH------HHHHHHHHHHHHHHHHH---HH
Q 037346 197 LLATAIVMLANFPLGRLREKFQDKFMETKDRRIKATSEILRNMRILKLQGWE------LKKNETAWLKKSVYTEA---MI 267 (1156)
Q Consensus 197 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~r~~~~~e~l~~i~~IK~~~~e------~r~~e~~~~~~~~~~~~---~~ 267 (1156)
+..+++++++.....+...+..++....+..--+...+.+.|..-.++||.+ ....|..+.+....... +.
T Consensus 166 ~~ll~~lli~P~~~~~~~~~~~~~l~~~r~~lr~~~td~v~G~~EL~~~g~~~~~~~~l~~~e~~~~~~q~k~~~~~~~~ 245 (573)
T COG4987 166 LILLLLLLIIPTLFYRAGRKFGAHLAQGRAALRSQFTDWVQGQAELLIFGAEDAYRTALEATEASWLKAQRKQARFTGLS 245 (573)
T ss_pred HHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHhhHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444444455555666666666666666677889999999999999988 33344444332222111 11
Q ss_pred HHHHHHHHH---HHHHHHHHHHHHhCCCcc-HHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHhccCCCC
Q 037346 268 SFFCWGAPT---FVSVVTFGSCILLGIPLE-SGMILSALTTFKILQEPIYY-LPESISMMIQAKVPLDRIASFLCLEGLQ 342 (1156)
Q Consensus 268 ~~~~~~~~~---~~~~~~f~~~~~~~~~lt-~~~~ft~l~~~~~l~~pl~~-l~~~~~~~~~a~~s~~Ri~~fl~~~~~~ 342 (1156)
.++..+... +...+|++.-.-.|+ .+ +..+...+..|..+ .++.- .|.++....+...|.+|+.+.++.++..
T Consensus 246 ~a~~~l~~g~~v~~~l~w~a~~~~~G~-~~~~~aa~~ll~~f~~~-eaf~~L~~~A~~~lgq~~~Sa~Rl~~i~~q~~e~ 323 (573)
T COG4987 246 DAILLLIAGLLVIGLLLWMAAQVGAGA-LAQPGAALALLVIFAAL-EAFEPLAPGAFQHLGQVIASARRLNDILDQKPEV 323 (573)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCcCCC-cchhHHHHHHHHHHHHH-HHHhhhcchhHHHhhHHHHHHHHHhhhccCCccc
Confidence 111111111 111222222222232 33 33333333323222 33322 2366788889999999999999886543
Q ss_pred ccccccCCCCCCCccEEEeeeEEEeCCCCCCCccccceEEeeCCeEEEEEcCCCCChHHHHHHHhCCCCCCCcEEEEcC-
Q 037346 343 TDVLEKMPRGNSDTAIEIIDGSFSWDFSSPNPTLRNINLKVFHGMRVAVCGTVGSGKSSCLSCILGGVPKESGIIRLCG- 421 (1156)
Q Consensus 343 ~~~~~~~~~~~~~~~i~~~~~~f~~~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKSTll~~i~g~~~~~~G~i~~~g- 421 (1156)
....+..+. .+..++++|++|+|+.+ +.++|+|+||++++||.+||+|+||||||||+++|.|.++|++|+|.++|
T Consensus 324 ~~~~~~~~~--~~~~l~~~~vsF~y~~~-~~~~L~~~~l~l~~GEkvAIlG~SGsGKSTllqLl~~~~~~~~G~i~~~g~ 400 (573)
T COG4987 324 TFPDEQTAT--TGQALELRNVSFTYPGQ-QTKALKNFNLTLAQGEKVAILGRSGSGKSTLLQLLAGAWDPQQGSITLNGV 400 (573)
T ss_pred CCCccccCC--ccceeeeccceeecCCC-ccchhhccceeecCCCeEEEECCCCCCHHHHHHHHHhccCCCCCeeeECCc
Confidence 322111111 11279999999999853 45899999999999999999999999999999999999999999999998
Q ss_pred ------------eEEEEecCCcCCCccHHHHhhcCCC-CCHHHHHHHHHHhCCchhhhhCCCCCccccccCCCCCCHHHH
Q 037346 422 ------------TKAYVAQSPWIQSGKIEENILFGKE-MDRERYERVLEACSLKKDLEVLPFGDQTIIGERGINLSGGQK 488 (1156)
Q Consensus 422 ------------~~~~v~Q~~~~~~~ti~eni~~~~~-~~~~~~~~~~~~~~l~~~~~~~~~g~~t~v~~~g~~LSgGqk 488 (1156)
.+++++|.+.+|++|+|||+.++++ .++|...+++++++|++.++..|+|++|.+||.|..||||||
T Consensus 401 ~~~~l~~~~~~e~i~vl~Qr~hlF~~Tlr~NL~lA~~~AsDEel~~aL~qvgL~~l~~~~p~gl~t~lge~G~~LSGGE~ 480 (573)
T COG4987 401 EIASLDEQALRETISVLTQRVHLFSGTLRDNLRLANPDASDEELWAALQQVGLEKLLESAPDGLNTWLGEGGRRLSGGER 480 (573)
T ss_pred ChhhCChhhHHHHHhhhccchHHHHHHHHHHHhhcCCCCCHHHHHHHHHHcCHHHHHHhChhhhhchhccCCCcCCchHH
Confidence 3688999999999999999999876 578999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhccCCCeeeeeCCCCCcCHHHHHHHHHHHHh-cCCCEEEEEccCCCccccCCEEEEEeCCeEEEccChHHHH
Q 037346 489 QRIQIARPLYQDADIFLLDDPFSPVDDHTGAHLFKFCWV-SSSKTVIYATHQVEFLPAADLILVIKDGKITQAGKYSDIL 567 (1156)
Q Consensus 489 qRi~lAral~~~~~illlDep~s~lD~~~~~~i~~~~~~-~~~~tvi~vtH~~~~~~~~d~i~~l~~G~i~~~g~~~~l~ 567 (1156)
||++|||+|++|++++||||||.+||+.|++++++.+.. .+|||+|+|||++..++.||+|++|++|+++++|+|.+++
T Consensus 481 rRLAlAR~LL~dapl~lLDEPTegLD~~TE~~vL~ll~~~~~~kTll~vTHrL~~le~~drIivl~~Gkiie~G~~~~Ll 560 (573)
T COG4987 481 RRLALARALLHDAPLWLLDEPTEGLDPITERQVLALLFEHAEGKTLLMVTHRLRGLERMDRIIVLDNGKIIEEGTHAELL 560 (573)
T ss_pred HHHHHHHHHHcCCCeEEecCCcccCChhhHHHHHHHHHHHhcCCeEEEEecccccHhhcCEEEEEECCeeeecCCHHhhh
Confidence 999999999999999999999999999999999988765 6899999999999999999999999999999999999999
Q ss_pred hcCcchHHHHH
Q 037346 568 NSGTDFMELVG 578 (1156)
Q Consensus 568 ~~~~~~~~~~~ 578 (1156)
.+++.|.++++
T Consensus 561 ~~~g~~~~l~q 571 (573)
T COG4987 561 ANNGRYKRLYQ 571 (573)
T ss_pred ccccHHHHHhc
Confidence 98887877653
|
|
| >TIGR03375 type_I_sec_LssB type I secretion system ATPase, LssB family | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-60 Score=600.34 Aligned_cols=418 Identities=22% Similarity=0.297 Sum_probs=337.0
Q ss_pred HHHHHHHHHHHHHHHHhccccccccccccccchhhhhcccccccchhhhcccchHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 037346 712 AGYKTATQLFNKMHVCIFRAPMYFFDSTPSGRILNRVSENVKWADQSAADMDIPYDIGAFAFSMIQLLGIIVVMSLVAWQ 791 (1156)
Q Consensus 712 ~~~~~~~~l~~~l~~~ll~~p~~ff~~~~~G~il~R~s~d~~~~d~~~~d~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 791 (1156)
.+.+...+++.++++|++++|+.| +++++|++++|+. |+..+...+...+...+..++.+++.+++++.++|+
T Consensus 214 ~~~~~~~~l~~~~~~~ll~l~~~~-~~~~~G~~~~r~~------d~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 286 (694)
T TIGR03375 214 AGKKADLILSAKLFERVLGLRMEA-RPASVGSFANQLR------EFESVRDFFTSATLTALIDLPFALLFLLVIAIIGGP 286 (694)
T ss_pred HHHHHHHHHHHHHHHHHhCCCccc-CCCChhHHHHHHH------HHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 456788899999999999999998 7889999999983 455555555555555555666666777778888999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhChHHHHHHhhccchhhhhhcchHHHHHHHHHHHHHHHhhHHHHHHH
Q 037346 792 VLIVFVPVIATFIWYQQYYITSTRELSRLIGVCKAPVIQQFSETISGSTTIRSLDQELRFRDTNMKLIDEYSRPKFHIAG 871 (1156)
Q Consensus 792 l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~e~l~Gi~tIra~~~e~~~~~~~~~~~~~~~~~~~~~~~ 871 (1156)
++++++..+++++.+..++.+..++..+...+..+...+.+.|+++|+++||+|+.|+.+.++|.+..++..+..++...
T Consensus 287 l~li~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~ 366 (694)
T TIGR03375 287 LVWVPLVAIPLILLPGLLLQRPLSRLAEESMRESAQRNAVLVESLSGLETIKALNAEGRFQRRWEQTVAALARSGLKSRF 366 (694)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88776666666666666666666777777777888899999999999999999999999999999998888777766655
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH---HHH---------------------HcCCCccchHHHHHHHhHHHHHHHHhhcCCC
Q 037346 872 AMEWLRFCIDMLSSITFAFSLA---FLI---------------------SVPNGIIHPYKNLERKIISVERILQCACIPS 927 (1156)
Q Consensus 872 ~~~~~~~~l~~~~~~~~~~~~~---~~~---------------------~~~~~~~~~~~~~~~~~~s~~Ri~~~~~~~~ 927 (1156)
...+.......+..+..++++. ..+ .+.........++.....+++|+.++.+.++
T Consensus 367 ~~~~~~~~~~~~~~~~~~~il~~g~~~v~~g~ls~G~l~a~~~~~~~~~~p~~~l~~~~~~~~~~~~~~~ri~~il~~~~ 446 (694)
T TIGR03375 367 LSNLATNFAQFIQQLVSVAIVVVGVYLISDGELTMGGLIACVMLSGRALAPLGQLAGLLTRYQQAKTALQSLDELMQLPV 446 (694)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 5544443333322221111111 000 0111112223577888899999999998776
Q ss_pred CCcccccCCCCCCCCCCCCeEEEEEEEEEEcCC---------------CCceeeCCCCCCHHHHHHHHhhcccCCCceEE
Q 037346 928 EPALVIEATKPNNSRPSHGEVNIRHLQVRYAPN---------------LPLVLRGRTGSGKSTLIQTLFRIVESTAGHIL 992 (1156)
Q Consensus 928 e~~~~~~~~~~~~~~p~~g~I~~~~Vsf~Y~~~---------------~~~vL~G~SGsGKSTL~~lL~rl~~p~~G~I~ 992 (1156)
|.+.. .......+..|.|+|+||+|+|+++ +.++|+|+||||||||+++|+|+|+|++|+|.
T Consensus 447 e~~~~---~~~~~~~~~~~~I~~~~vsf~Y~~~~~~vL~~i~l~i~~G~~iaIvG~sGsGKSTLlklL~gl~~p~~G~I~ 523 (694)
T TIGR03375 447 ERPEG---TRFLHRPRLQGEIEFRNVSFAYPGQETPALDNVSLTIRPGEKVAIIGRIGSGKSTLLKLLLGLYQPTEGSVL 523 (694)
T ss_pred CCCCC---CCCCCCCCccceEEEEEEEEEeCCCCccceeeeeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEE
Confidence 64321 1111112235789999999999643 23456799999999999999999999999999
Q ss_pred EcCeeCCCCChHHHhhcCeeeccccccccccchhccCCCCC-CCHHHHHHHHHHcCCChHHHhhcCCcccc---------
Q 037346 993 IDGKDISLIGLHDLRTRLSIIPQDPTMFEGTTRSNLDPLEE-HADEQIWEALDKCQLGDEVRKKKGKLDSQ--------- 1062 (1156)
Q Consensus 993 idG~di~~i~~~~LR~~i~~VpQdp~LF~gTIr~Nl~~~~~-~~deei~~al~~~~l~~~i~~lp~gl~s~--------- 1062 (1156)
+||+|+++++++++|++|++|||||++|+|||||||.++++ .+|+++++|++.+++++++.++|+||||.
T Consensus 524 idg~~l~~~~~~~lr~~i~~v~Q~~~lf~~TI~eNi~~~~~~~~~~~i~~a~~~~~l~~~i~~lp~gl~T~i~e~G~~LS 603 (694)
T TIGR03375 524 LDGVDIRQIDPADLRRNIGYVPQDPRLFYGTLRDNIALGAPYADDEEILRAAELAGVTEFVRRHPDGLDMQIGERGRSLS 603 (694)
T ss_pred ECCEEhhhCCHHHHHhccEEECCChhhhhhhHHHHHhCCCCCCCHHHHHHHHHHcChHHHHHhCcccccceecCCCCCCC
Confidence 99999999999999999999999999999999999998865 78999999999999999999999999975
Q ss_pred ---------ccccccCCCEEEEecCCcCCCHHHHHHHHHHHHHhcCCceEEEeecCcccccccCEEEEEeCcEEeeecCh
Q 037346 1063 ---------GRVLLKKSKVLVLDEATASVDTATDNQIQQTLRQHFSDCTVVTIAHRITSVLDSAMVLLLNHGLIKEYDSP 1133 (1156)
Q Consensus 1063 ---------ARALLr~~~ILiLDEaTS~LD~~te~~I~~~l~~~~~~~TvI~IaHrl~ti~~~D~I~Vl~~G~IvE~G~~ 1133 (1156)
||||+++|+|||||||||+||++||+.|++.|++..+++|+|+||||++++..||+|+||++|+|+|.|+|
T Consensus 604 gGQrQRlalARall~~p~iliLDE~Ts~LD~~te~~i~~~l~~~~~~~T~iiItHrl~~~~~~D~iivl~~G~i~e~G~~ 683 (694)
T TIGR03375 604 GGQRQAVALARALLRDPPILLLDEPTSAMDNRSEERFKDRLKRWLAGKTLVLVTHRTSLLDLVDRIIVMDNGRIVADGPK 683 (694)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHhCCEEEEEeCCEEEeeCCH
Confidence 89999999999999999999999999999999999899999999999999999999999999999999999
Q ss_pred hHHhcC
Q 037346 1134 TKLLEN 1139 (1156)
Q Consensus 1134 ~eLl~~ 1139 (1156)
+||+++
T Consensus 684 ~eLl~~ 689 (694)
T TIGR03375 684 DQVLEA 689 (694)
T ss_pred HHHHHH
Confidence 999965
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export. |
| >PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-61 Score=589.53 Aligned_cols=449 Identities=20% Similarity=0.354 Sum_probs=334.0
Q ss_pred cEEEeeeEEEeCCC-CCCCccccceEEeeCCeEEEEEcCCCCChHHHHHHHhCCCCC-----CCcEEEEcC---------
Q 037346 357 AIEIIDGSFSWDFS-SPNPTLRNINLKVFHGMRVAVCGTVGSGKSSCLSCILGGVPK-----ESGIIRLCG--------- 421 (1156)
Q Consensus 357 ~i~~~~~~f~~~~~-~~~~~l~~i~l~i~~g~~~~ivG~~GsGKSTll~~i~g~~~~-----~~G~i~~~g--------- 421 (1156)
.++++|++++|+.. .++++|+|+||+|++||+++|+||||||||||+++|+|+++| ++|+|.++|
T Consensus 5 ~l~~~~l~~~~~~~~~~~~~l~~isl~i~~Ge~~~iiG~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~~ 84 (529)
T PRK15134 5 LLAIENLSVAFRQQQTVRTVVNDVSLQIEAGETLALVGESGSGKSVTALSILRLLPSPPVVYPSGDIRFHGESLLHASEQ 84 (529)
T ss_pred eEEEeceEEEecCCCCceeeeeceEEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCcCCccceEEEECCEecccCCHH
Confidence 58999999999631 125799999999999999999999999999999999999986 799999876
Q ss_pred --------eEEEEecCCc--CC-CccHHHHhhcCC----CCC----HHHHHHHHHHhCCchhhhhCCCCCccccccCCCC
Q 037346 422 --------TKAYVAQSPW--IQ-SGKIEENILFGK----EMD----RERYERVLEACSLKKDLEVLPFGDQTIIGERGIN 482 (1156)
Q Consensus 422 --------~~~~v~Q~~~--~~-~~ti~eni~~~~----~~~----~~~~~~~~~~~~l~~~~~~~~~g~~t~v~~~g~~ 482 (1156)
.++|++|+|. ++ ..|+++|+.++. ..+ .++.+++++.+++.+... ...+...+
T Consensus 85 ~~~~~~~~~ig~v~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~--------~~~~~~~~ 156 (529)
T PRK15134 85 TLRGVRGNKIAMIFQEPMVSLNPLHTLEKQLYEVLSLHRGMRREAARGEILNCLDRVGIRQAAK--------RLTDYPHQ 156 (529)
T ss_pred HHHHHhcCceEEEecCchhhcCchhhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHCCCCChHH--------HHhhCCcc
Confidence 2799999985 33 358999986421 111 245566777777753211 11245578
Q ss_pred CCHHHHHHHHHHHhhccCCCeeeeeCCCCCcCHHHHHHHHHHHHh--c-CCCEEEEEccCCCccc-cCCEEEEEeCCeEE
Q 037346 483 LSGGQKQRIQIARPLYQDADIFLLDDPFSPVDDHTGAHLFKFCWV--S-SSKTVIYATHQVEFLP-AADLILVIKDGKIT 558 (1156)
Q Consensus 483 LSgGqkqRi~lAral~~~~~illlDep~s~lD~~~~~~i~~~~~~--~-~~~tvi~vtH~~~~~~-~~d~i~~l~~G~i~ 558 (1156)
|||||||||+|||||+.+|+++||||||++||+.+++++.+.+.. . .|+|+|+|||+++.+. .||+|++|++|+++
T Consensus 157 LSgGe~qrv~iAraL~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvi~vtHd~~~~~~~~dri~~l~~G~i~ 236 (529)
T PRK15134 157 LSGGERQRVMIAMALLTRPELLIADEPTTALDVSVQAQILQLLRELQQELNMGLLFITHNLSIVRKLADRVAVMQNGRCV 236 (529)
T ss_pred cCHHHHHHHHHHHHHhcCCCEEEEcCCCCccCHHHHHHHHHHHHHHHHhcCCeEEEEcCcHHHHHHhcCEEEEEECCEEE
Confidence 999999999999999999999999999999999999998876644 2 4899999999999886 59999999999999
Q ss_pred EccChHHHHhcCcc-hHHHHHhhhhhccCCCCCCCCCcccccccccCCCCCCCcccchhcccccCCCCcccccCccCcch
Q 037346 559 QAGKYSDILNSGTD-FMELVGAHKQALSGLDSIDRGPVSERKSINKENDGTSTTNEIVNKEENKNFQSDDEAALPKGQLV 637 (1156)
Q Consensus 559 ~~g~~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 637 (1156)
+.|+++++...... +.+.
T Consensus 237 ~~g~~~~~~~~~~~~~~~~------------------------------------------------------------- 255 (529)
T PRK15134 237 EQNRAATLFSAPTHPYTQK------------------------------------------------------------- 255 (529)
T ss_pred EeCCHHHHhhCCCCHHHHH-------------------------------------------------------------
Confidence 99988766431100 0000
Q ss_pred hHHHHhcCcccHHHHHHHHHHhccchHHHHHHHHHHHHHHHHhhhhhhhhhccccccccCCCCCchhhHHHHHHHHHHHH
Q 037346 638 QEEEREKGKVGFSVYWKYMTTAYGGVLVPFILLAQIIFQIFQIGSNYWMAWATPVAKDVNPAVGASTLIIVYVGAGYKTA 717 (1156)
Q Consensus 638 ~~e~~~~g~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 717 (1156)
++... .
T Consensus 256 -----------------~~~~~--------------------------------------~------------------- 261 (529)
T PRK15134 256 -----------------LLNSE--------------------------------------P------------------- 261 (529)
T ss_pred -----------------HHHhC--------------------------------------c-------------------
Confidence 00000 0
Q ss_pred HHHHHHHHHHhccccccccccccccchhhhhcccccccchhhhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 037346 718 TQLFNKMHVCIFRAPMYFFDSTPSGRILNRVSENVKWADQSAADMDIPYDIGAFAFSMIQLLGIIVVMSLVAWQVLIVFV 797 (1156)
Q Consensus 718 ~~l~~~l~~~ll~~p~~ff~~~~~G~il~R~s~d~~~~d~~~~d~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~ 797 (1156)
..+ -....+.++.+ +. ..++.
T Consensus 262 ------------~~~--~~~~~~~~~~~--l~----~~~l~--------------------------------------- 282 (529)
T PRK15134 262 ------------SGD--PVPLPEPASPL--LD----VEQLQ--------------------------------------- 282 (529)
T ss_pred ------------ccc--ccccCCCCCCc--cc----ccCcE---------------------------------------
Confidence 000 00000000000 00 00000
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHhhChHHHHHHhhccchhhhhhcchHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Q 037346 798 PVIATFIWYQQYYITSTRELSRLIGVCKAPVIQQFSETISGSTTIRSLDQELRFRDTNMKLIDEYSRPKFHIAGAMEWLR 877 (1156)
Q Consensus 798 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~e~l~Gi~tIra~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 877 (1156)
T Consensus 283 -------------------------------------------------------------------------------- 282 (529)
T PRK15134 283 -------------------------------------------------------------------------------- 282 (529)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHHHHHHHHHHHHHcCCCccchHHHHHHHhHHHHHHHHhhcCCCCCcccccCCCCCCCCCCCCeEEEEEEEEEE
Q 037346 878 FCIDMLSSITFAFSLAFLISVPNGIIHPYKNLERKIISVERILQCACIPSEPALVIEATKPNNSRPSHGEVNIRHLQVRY 957 (1156)
Q Consensus 878 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~Ri~~~~~~~~e~~~~~~~~~~~~~~p~~g~I~~~~Vsf~Y 957 (1156)
. ..+.. ...... +..+...|+|+||..
T Consensus 283 -------------------------~--------------------~~~~~------~~~~~~--~~~~~~il~~isl~i 309 (529)
T PRK15134 283 -------------------------V--------------------AFPIR------KGILKR--TVDHNVVVKNISFTL 309 (529)
T ss_pred -------------------------E--------------------EeecC------cccccc--ccccceeeecceeEE
Confidence 0 00000 000000 001234799999999
Q ss_pred cCCCCceeeCCCCCCHHHHHHHHhhcccCCCceEEEcCeeCCCCChHH---HhhcCeeecccc--cccc-ccchhccCCC
Q 037346 958 APNLPLVLRGRTGSGKSTLIQTLFRIVESTAGHILIDGKDISLIGLHD---LRTRLSIIPQDP--TMFE-GTTRSNLDPL 1031 (1156)
Q Consensus 958 ~~~~~~vL~G~SGsGKSTL~~lL~rl~~p~~G~I~idG~di~~i~~~~---LR~~i~~VpQdp--~LF~-gTIr~Nl~~~ 1031 (1156)
.+++.++|.|+||||||||+++|+|++ |++|+|.+||.++..++... +|++++||||++ .+|. .|+++|+.+.
T Consensus 310 ~~Ge~~~i~G~nGsGKSTLlk~l~Gl~-~~~G~i~~~g~~i~~~~~~~~~~~~~~i~~v~q~~~~~l~~~~tv~e~l~~~ 388 (529)
T PRK15134 310 RPGETLGLVGESGSGKSTTGLALLRLI-NSQGEIWFDGQPLHNLNRRQLLPVRHRIQVVFQDPNSSLNPRLNVLQIIEEG 388 (529)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCcC-CCCcEEEECCEEccccchhhHHHhhhceEEEEeCchhhcCCcccHHHHHHHH
Confidence 999999999999999999999999998 58999999999998776543 477899999998 3665 4999999642
Q ss_pred ---C--CCC----HHHHHHHHHHcCCC-hHHHhhcCCcccc-------ccccccCCCEEEEecCCcCCCHHHHHHHHHHH
Q 037346 1032 ---E--EHA----DEQIWEALDKCQLG-DEVRKKKGKLDSQ-------GRVLLKKSKVLVLDEATASVDTATDNQIQQTL 1094 (1156)
Q Consensus 1032 ---~--~~~----deei~~al~~~~l~-~~i~~lp~gl~s~-------ARALLr~~~ILiLDEaTS~LD~~te~~I~~~l 1094 (1156)
. ... ++.+.++++..++. +.....|..|..+ ||||+.+|+||||||||++||+.+.+.+.+.|
T Consensus 389 ~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l 468 (529)
T PRK15134 389 LRVHQPTLSAAQREQQVIAVMEEVGLDPETRHRYPAEFSGGQRQRIAIARALILKPSLIILDEPTSSLDKTVQAQILALL 468 (529)
T ss_pred HHhccccCChHHHHHHHHHHHHHcCCCHHHHhcCCccCCHHHHHHHHHHHHHhCCCCEEEeeCCccccCHHHHHHHHHHH
Confidence 1 111 34678999999997 4566666666654 89999999999999999999999999999999
Q ss_pred HHhcC--CceEEEeecCcccccc-cCEEEEEeCcEEeeecChhHHhcCCC
Q 037346 1095 RQHFS--DCTVVTIAHRITSVLD-SAMVLLLNHGLIKEYDSPTKLLENKS 1141 (1156)
Q Consensus 1095 ~~~~~--~~TvI~IaHrl~ti~~-~D~I~Vl~~G~IvE~G~~~eLl~~~~ 1141 (1156)
+++.+ ++|||+|||+++.+.. ||+|++|++|+|++.|++++++.++.
T Consensus 469 ~~~~~~~~~tvi~vsHd~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~~~ 518 (529)
T PRK15134 469 KSLQQKHQLAYLFISHDLHVVRALCHQVIVLRQGEVVEQGDCERVFAAPQ 518 (529)
T ss_pred HHHHHhhCCEEEEEeCCHHHHHHhcCeEEEEECCEEEEEcCHHHHhcCCC
Confidence 98753 7899999999998865 99999999999999999999986543
|
|
| >COG5265 ATM1 ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-61 Score=526.54 Aligned_cols=429 Identities=20% Similarity=0.342 Sum_probs=349.0
Q ss_pred HHHHHHHHHHHHHHHHhccccccccccccccchhhhhcccccccchhhhcccchHHHHHHHHHHHHHHHHHHH-HHHHHH
Q 037346 712 AGYKTATQLFNKMHVCIFRAPMYFFDSTPSGRILNRVSENVKWADQSAADMDIPYDIGAFAFSMIQLLGIIVV-MSLVAW 790 (1156)
Q Consensus 712 ~~~~~~~~l~~~l~~~ll~~p~~ff~~~~~G~il~R~s~d~~~~d~~~~d~~l~~~~~~~~~~~~~~~~~~~~-~~~~~~ 790 (1156)
.+..+.+.+--+.|.|+.++.+.|.-++.+|-+...+. .-..-++..+.+.+...+..++-+....++ ...++|
T Consensus 9 v~q~a~r~la~~~F~h~~~Lsl~fHl~r~TGglsR~ie-----rGtkgI~~i~~~~l~~i~P~~~Ei~l~~vi~~~~~~~ 83 (497)
T COG5265 9 VGQIAVRVLAYVTFFHLHSLSLRFHLERRTGGLSRAIE-----RGTKGIETILRWILFNILPTLVEISLVAVILWRVYGW 83 (497)
T ss_pred HHHHHHHHHHHHHHHHHHhcchhhhhhcccCceeeHhh-----cCcccHHHHHHHHHHHhhHHHHHHHHHHHHHHhhccc
Confidence 45566677778889999999999999998887755554 333344444555566666555555444443 445788
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhChHHHHHHhhccchhhhhhcchHHHHHHHHHHHHHHHhhHHHHHH
Q 037346 791 QVLIVFVPVIATFIWYQQYYITSTRELSRLIGVCKAPVIQQFSETISGSTTIRSLDQELRFRDTNMKLIDEYSRPKFHIA 870 (1156)
Q Consensus 791 ~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~e~l~Gi~tIra~~~e~~~~~~~~~~~~~~~~~~~~~~ 870 (1156)
+.+++++..+++|.++........-..+|....+-+...+...+++-+-+|+|.||.|+++..+|.+.++.+.++..+..
T Consensus 84 ~f~~~t~vtv~lY~~ftv~~s~wr~~~rr~~n~aDs~a~~~aidsLlnfEtvk~F~ne~~e~~r~~~~~~~Y~~a~~k~~ 163 (497)
T COG5265 84 WFALTTLVTVILYLLFTVIVSDWRTDFRRLMNNADSDANAKAIDSLLNFETVKYFGNEEYEAVRYDHALETYEKAAIKVH 163 (497)
T ss_pred HHHHHHHHHHHHHHHhheeehhhhHHHHHhhhhhhhHHHHHHHHHHhhhhheeecCchhhhhhhcCchHHHHHHHHHHHH
Confidence 88888777777776665555555556677777788888999999999999999999999999999999999999998888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH---------------------HH---HcCCCccchHHHHHHHhHHHHHHHHhhcCC
Q 037346 871 GAMEWLRFCIDMLSSITFAFSLAF---------------------LI---SVPNGIIHPYKNLERKIISVERILQCACIP 926 (1156)
Q Consensus 871 ~~~~~~~~~l~~~~~~~~~~~~~~---------------------~~---~~~~~~~~~~~~~~~~~~s~~Ri~~~~~~~ 926 (1156)
.+..|+.+.-..+........... +. .+.+..-..+.++.+.....|++.+..+.+
T Consensus 164 ~Sl~~Ln~gQ~~I~~~~l~~~m~~s~~~v~~g~~TvgD~V~~Nall~qls~Plnflg~~Yrei~q~ltdme~mfdLl~~~ 243 (497)
T COG5265 164 VSLLVLNFGQTAIFSTGLRVMMTMSALGVEEGQLTVGDLVNVNALLFQLSIPLNFLGFSYREIRQALTDMEKMFDLLDVE 243 (497)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHhhcHHHHhhccCCchhHHhHHHHHhhhhhhhhhhHHHHHHHHHhhhhHHHHHHhhccc
Confidence 888888766554443322211111 00 011111122367788888889999888766
Q ss_pred CCCcccccCCCCCCCCC-CCCeEEEEEEEEEEcCCCC--------------ceeeCCCCCCHHHHHHHHhhcccCCCceE
Q 037346 927 SEPALVIEATKPNNSRP-SHGEVNIRHLQVRYAPNLP--------------LVLRGRTGSGKSTLIQTLFRIVESTAGHI 991 (1156)
Q Consensus 927 ~e~~~~~~~~~~~~~~p-~~g~I~~~~Vsf~Y~~~~~--------------~vL~G~SGsGKSTL~~lL~rl~~p~~G~I 991 (1156)
.|.. +.+..++-|| ..|.|.|+||+|.|.|..| ++++|+||+||||+.++|+|||++++|.|
T Consensus 244 ~~v~---d~pda~~L~~~~~g~v~F~~V~F~y~~~r~iL~~isf~i~~g~tvAiVg~SG~gKsTI~rllfRFyD~~sG~I 320 (497)
T COG5265 244 AEVS---DAPDAPPLWPVRLGAVAFINVSFAYDPRRPILNGISFTIPLGKTVAIVGESGAGKSTILRLLFRFYDVNSGSI 320 (497)
T ss_pred hhhc---cCCCCccccccccceEEEEEEEeeccccchhhcCccccccCccEEEEEeCCCCcHHHHHHHHHHHhCCcCceE
Confidence 6543 2233345564 4588999999999976544 46779999999999999999999999999
Q ss_pred EEcCeeCCCCChHHHhhcCeeeccccccccccchhccCCCCC-CCHHHHHHHHHHcCCChHHHhhcCCcccc--------
Q 037346 992 LIDGKDISLIGLHDLRTRLSIIPQDPTMFEGTTRSNLDPLEE-HADEQIWEALDKCQLGDEVRKKKGKLDSQ-------- 1062 (1156)
Q Consensus 992 ~idG~di~~i~~~~LR~~i~~VpQdp~LF~gTIr~Nl~~~~~-~~deei~~al~~~~l~~~i~~lp~gl~s~-------- 1062 (1156)
.|||.||+++..+.||+.||+||||.+||++|+..|+.++++ .+++|++.|++.+++++||+.+|+||+++
T Consensus 321 ~id~qdir~vtq~slR~aIg~VPQDtvLFNDti~yni~ygr~~at~eev~aaa~~aqi~~fi~~lP~gy~t~Vgerglkl 400 (497)
T COG5265 321 TIDGQDIRDVTQQSLRRAIGIVPQDTVLFNDTIAYNIKYGRPDATAEEVGAAAEAAQIHDFIQSLPEGYDTGVGERGLKL 400 (497)
T ss_pred EEcchhHHHhHHHHHHHHhCcCcccceehhhhHHHHHhccCccccHHHHHHHHHHhhhhHHHHhCchhhhcccchheeec
Confidence 999999999999999999999999999999999999999875 57999999999999999999999999987
Q ss_pred ----------ccccccCCCEEEEecCCcCCCHHHHHHHHHHHHHhcCCceEEEeecCcccccccCEEEEEeCcEEeeecC
Q 037346 1063 ----------GRVLLKKSKVLVLDEATASVDTATDNQIQQTLRQHFSDCTVVTIAHRITSVLDSAMVLLLNHGLIKEYDS 1132 (1156)
Q Consensus 1063 ----------ARALLr~~~ILiLDEaTS~LD~~te~~I~~~l~~~~~~~TvI~IaHrl~ti~~~D~I~Vl~~G~IvE~G~ 1132 (1156)
||++||+|+||+||||||+||..||+.||.+|++..+++|.++|||||+||.+||.|+||++|+|+|.|+
T Consensus 401 Sggekqrvaiar~ilk~p~il~~deatsaldt~te~~iq~~l~~~~~~rttlviahrlsti~~adeiivl~~g~i~erg~ 480 (497)
T COG5265 401 SGGEKQRVAIARTILKNPPILILDEATSALDTHTEQAIQAALREVSAGRTTLVIAHRLSTIIDADEIIVLDNGRIVERGT 480 (497)
T ss_pred cCchHHHHHHHHHHhcCCCEEEEehhhhHhhhhHHHHHHHHHHHHhCCCeEEEEeehhhhccCCceEEEeeCCEEEecCc
Confidence 8999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhHHhcCCCChHHHHHH
Q 037346 1133 PTKLLENKSSSFAQLVA 1149 (1156)
Q Consensus 1133 ~~eLl~~~~g~f~~l~~ 1149 (1156)
|+||+++ +|.|++||.
T Consensus 481 h~~ll~~-~g~ya~mw~ 496 (497)
T COG5265 481 HEELLAA-GGLYAEMWR 496 (497)
T ss_pred HHHHHHc-CChHHHHhc
Confidence 9999986 899999996
|
|
| >TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP) | Back alignment and domain information |
|---|
Probab=100.00 E-value=9e-59 Score=620.00 Aligned_cols=509 Identities=16% Similarity=0.150 Sum_probs=364.4
Q ss_pred cchHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHhc-C-CCc--ccchhhHH------HHHHHHHHHHHHH
Q 037346 69 LRLAKVLFFSAWQEI-LFIAILALLYTLATYVGPYLIDNFVQYLN-G-RQA--FEYEGYVL------CLSERHWFFQVQQ 137 (1156)
Q Consensus 69 ~~l~~~l~~~~~~~~-~~~~~~~~~~~~~~~~~p~ll~~~i~~~~-~-~~~--~~~~g~~l------~~~~~~~~~~~~~ 137 (1156)
.+.++.+++..++.. ++.+++.++..++....|+.++...+... . ... ..+.+++. .++.....+....
T Consensus 952 ~~~y~~Y~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~w~~~~~~~~~~~~~~~~~~iy~~l~i~~~~~~~~~~~~~~~ 1031 (1522)
T TIGR00957 952 LSVYWDYMKAIGLFITFLSIFLFVCNHVSALASNYWLSLWTDDPMVNGTQNNTSLRLSVYGALGILQGFAVFGYSMAVSI 1031 (1522)
T ss_pred HHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555666554332 23334445556677778888887665321 1 111 11122111 1111111223455
Q ss_pred HHHHHHHHHHHHHHHHHhcCCccccCCCCHHHHHHHHHHHHHH-------HH--------------HHHHHHHHHHHHHH
Q 037346 138 FGIRFRATLFAMIYNKGLTLSGQAKQGNTSGEIINLIAVDAER-------AL--------------LILYKKLGLASIAT 196 (1156)
Q Consensus 138 ~~~~~r~~l~~~i~~k~l~l~~~~~~~~~~g~i~nl~s~D~~~-------~~--------------~ll~~~lg~~~l~~ 196 (1156)
.+.+.-..+...+|++.++.+...+++.++|+++|++++|++. .+ ++++....+.+++.
T Consensus 1032 ~~~~~~~~l~~~l~~~ll~~p~~ff~~~~~G~ilnR~s~Di~~id~~l~~~~~~~~~~~~~~i~~li~~~~~~~~~~~~~ 1111 (1522)
T TIGR00957 1032 GGIQASRVLHQDLLHNKLRSPMSFFERTPSGNLVNRFSKELDTVDSMIPPVIKMFMGSLFNVIGALIVILLATPIAAVII 1111 (1522)
T ss_pred HHHHHHHHHHHHHHHHHHcCChhHhccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6778888889999999999999999999999999999999987 00 00011000111111
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH--HHHHHH---HHHHHHH----HHHH
Q 037346 197 LLATAIVMLANFPLGRLREKFQDKFMETKDRRIKATSEILRNMRILKLQGWELK--KNETAW---LKKSVYT----EAMI 267 (1156)
Q Consensus 197 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~r~~~~~e~l~~i~~IK~~~~e~r--~~e~~~---~~~~~~~----~~~~ 267 (1156)
++++++.+.+...+.+..+..++.....++...+...|.++|+++||.|++|.+ +.-.+. ..+..+. ..+.
T Consensus 1112 ~~~~~~~~~~~~~~~~~~r~~~~~~~~~~s~l~~~~~E~l~Gi~tIraf~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~ 1191 (1522)
T TIGR00957 1112 PPLGLLYFFVQRFYVASSRQLKRLESVSRSPVYSHFNETLLGVSVIRAFEEQERFIHQSDLKVDENQKAYYPSIVANRWL 1191 (1522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhCCcHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 111111111111122222223333334445556889999999999999999922 111111 1111111 1111
Q ss_pred HHHHHHHHHHHHHHHHHHHHHh-CCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCccc-
Q 037346 268 SFFCWGAPTFVSVVTFGSCILL-GIPLESGMILSALTTFKILQEPIYYLPESISMMIQAKVPLDRIASFLCLEGLQTDV- 345 (1156)
Q Consensus 268 ~~~~~~~~~~~~~~~f~~~~~~-~~~lt~~~~ft~l~~~~~l~~pl~~l~~~~~~~~~a~~s~~Ri~~fl~~~~~~~~~- 345 (1156)
.........+ ..+..+.+.+. .+.+++|.+..++.+...+..|+..+...+..+..+.+|.+||.++++.++..+..
T Consensus 1192 ~~~~~~~~~~-~~~~~~~~~v~~~~~~~~g~l~~~l~~~~~~~~~l~~l~~~~~~~e~~~~s~eRi~~~~~~~~e~~~~~ 1270 (1522)
T TIGR00957 1192 AVRLECVGNC-IVLFAALFAVISRHSLSAGLVGLSVSYSLQVTFYLNWLVRMSSEMETNIVAVERLKEYSETEKEAPWQI 1270 (1522)
T ss_pred HHHHHHHHHH-HHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCccccc
Confidence 1111111111 12222333333 46799999999999999999999999999999999999999999999765432210
Q ss_pred cccCCCC--CCCccEEEeeeEEEeCCCCCCCccccceEEeeCCeEEEEEcCCCCChHHHHHHHhCCCCCCCcEEEEcCe-
Q 037346 346 LEKMPRG--NSDTAIEIIDGSFSWDFSSPNPTLRNINLKVFHGMRVAVCGTVGSGKSSCLSCILGGVPKESGIIRLCGT- 422 (1156)
Q Consensus 346 ~~~~~~~--~~~~~i~~~~~~f~~~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKSTll~~i~g~~~~~~G~i~~~g~- 422 (1156)
....++. +..+.|+|+|++|+|+.+ ..++|+|+||+|++||++||||++|||||||+++|+|+++|++|+|.+||.
T Consensus 1271 ~~~~~~~~wp~~g~I~f~nVsf~Y~~~-~~~vL~~is~~I~~GekiaIVGrTGsGKSTL~~lL~rl~~~~~G~I~IdG~d 1349 (1522)
T TIGR00957 1271 QETAPPSGWPPRGRVEFRNYCLRYRED-LDLVLRHINVTIHGGEKVGIVGRTGAGKSSLTLGLFRINESAEGEIIIDGLN 1349 (1522)
T ss_pred cCCCCCCCCCCCCcEEEEEEEEEeCCC-CcccccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCccCCCCeEEECCEE
Confidence 0111111 234679999999999743 347999999999999999999999999999999999999999999999993
Q ss_pred ------------EEEEecCCcCCCccHHHHhhcCCCCCHHHHHHHHHHhCCchhhhhCCCCCccccccCCCCCCHHHHHH
Q 037346 423 ------------KAYVAQSPWIQSGKIEENILFGKEMDRERYERVLEACSLKKDLEVLPFGDQTIIGERGINLSGGQKQR 490 (1156)
Q Consensus 423 ------------~~~v~Q~~~~~~~ti~eni~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~t~v~~~g~~LSgGqkqR 490 (1156)
++||||+|.+|+|||||||....++++++..++++.|++.+.+..+|+|++|.||++|.+||||||||
T Consensus 1350 I~~i~~~~LR~~i~iVpQdp~LF~gTIr~NLdp~~~~sdeei~~al~~a~l~~~I~~lp~GLdt~v~e~G~~LSgGQrQr 1429 (1522)
T TIGR00957 1350 IAKIGLHDLRFKITIIPQDPVLFSGSLRMNLDPFSQYSDEEVWWALELAHLKTFVSALPDKLDHECAEGGENLSVGQRQL 1429 (1522)
T ss_pred ccccCHHHHHhcCeEECCCCcccCccHHHHcCcccCCCHHHHHHHHHHcCcHHHHhhCccCCCceecCCCCcCCHHHHHH
Confidence 69999999999999999998444688899999999999999999999999999999999999999999
Q ss_pred HHHHHhhccCCCeeeeeCCCCCcCHHHHHHHHHHHHh-cCCCEEEEEccCCCccccCCEEEEEeCCeEEEccChHHHHhc
Q 037346 491 IQIARPLYQDADIFLLDDPFSPVDDHTGAHLFKFCWV-SSSKTVIYATHQVEFLPAADLILVIKDGKITQAGKYSDILNS 569 (1156)
Q Consensus 491 i~lAral~~~~~illlDep~s~lD~~~~~~i~~~~~~-~~~~tvi~vtH~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~ 569 (1156)
++|||||+++|+|||||||||+||+++++.|.+.+.. .+++|+|+|+||++.+..||+|++|++|+|++.|+|++++++
T Consensus 1430 l~LARALLr~~~ILiLDEaTSalD~~Te~~Iq~~l~~~~~~~TvI~IAHRl~ti~~~DrIlVld~G~IvE~G~~~eLl~~ 1509 (1522)
T TIGR00957 1430 VCLARALLRKTKILVLDEATAAVDLETDNLIQSTIRTQFEDCTVLTIAHRLNTIMDYTRVIVLDKGEVAEFGAPSNLLQQ 1509 (1522)
T ss_pred HHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHcCCCEEEEEecCHHHHHhCCEEEEEECCEEEEECCHHHHHhC
Confidence 9999999999999999999999999999888776644 578999999999999999999999999999999999999988
Q ss_pred CcchHHHHHh
Q 037346 570 GTDFMELVGA 579 (1156)
Q Consensus 570 ~~~~~~~~~~ 579 (1156)
++.|.++++.
T Consensus 1510 ~~~f~~l~~~ 1519 (1522)
T TIGR00957 1510 RGIFYSMAKD 1519 (1522)
T ss_pred CCHHHHHHHH
Confidence 7888887654
|
This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved. |
| >TIGR01846 type_I_sec_HlyB type I secretion system ABC transporter, HlyB family | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.7e-60 Score=593.34 Aligned_cols=429 Identities=20% Similarity=0.315 Sum_probs=345.4
Q ss_pred HHHHHHHHHHHHHHHHhccccccccccccccchhhhhcccccccchhhhcccchHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 037346 712 AGYKTATQLFNKMHVCIFRAPMYFFDSTPSGRILNRVSENVKWADQSAADMDIPYDIGAFAFSMIQLLGIIVVMSLVAWQ 791 (1156)
Q Consensus 712 ~~~~~~~~l~~~l~~~ll~~p~~ff~~~~~G~il~R~s~d~~~~d~~~~d~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 791 (1156)
.+.+....++.+++++++++|+.||+++++|++++|++ |...+...+...+..++..++.+++.++++++++|+
T Consensus 206 ~~~~~~~~l~~~~~~~l~~l~~~~f~~~~~g~~~~rl~------d~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 279 (694)
T TIGR01846 206 LTSRIDVELGARLYRHLLGLPLGYFESRRVGDTVARVR------ELEQIRNFLTGSALTVVLDLLFVVVFLAVMFFYSPT 279 (694)
T ss_pred HHHHHHHHHHHHHHHHHHcCCHHHcCCCCHHHHHHHhh------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46688889999999999999999999999999999994 455555555444555555555556667788889999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhChHHHHHHhhccchhhhhhcchHHHHHHHHHHHHHHHhhHHHHHHH
Q 037346 792 VLIVFVPVIATFIWYQQYYITSTRELSRLIGVCKAPVIQQFSETISGSTTIRSLDQELRFRDTNMKLIDEYSRPKFHIAG 871 (1156)
Q Consensus 792 l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~e~l~Gi~tIra~~~e~~~~~~~~~~~~~~~~~~~~~~~ 871 (1156)
++++++..++++..+..++.+..+...+...+..+...+.+.|+++|+++||++|.|+.+.++|.+..++..+..+....
T Consensus 280 l~li~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~ 359 (694)
T TIGR01846 280 LTGVVIGSLVCYALLSVFVGPILRKRVEDKFERSAAATSFLVESVTGIETIKATATEPQFQNRWDRQLAAYVAASFRVTN 359 (694)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHcccCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88776666555555555555555555555556677889999999999999999999999999999999888887777666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH---HH---------------------HcCCCccchHHHHHHHhHHHHHHHHhhcCCC
Q 037346 872 AMEWLRFCIDMLSSITFAFSLAF---LI---------------------SVPNGIIHPYKNLERKIISVERILQCACIPS 927 (1156)
Q Consensus 872 ~~~~~~~~l~~~~~~~~~~~~~~---~~---------------------~~~~~~~~~~~~~~~~~~s~~Ri~~~~~~~~ 927 (1156)
...+......++..+..++.+.+ ++ .+.........+++....+++|+.++.+.++
T Consensus 360 ~~~~~~~~~~~i~~~~~~~il~~g~~lv~~g~it~G~lia~~~l~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~l~~~~ 439 (694)
T TIGR01846 360 LGNIAGQAIELIQKLTFAILLWFGAHLVIGGALSPGQLVAFNMLAGRVTQPVLRLAQLWQDFQQTGIALERLGDILNSPT 439 (694)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 65555554444332222211111 00 0011111222567788899999999998776
Q ss_pred CCcccccCCCCCCCCCCCCeEEEEEEEEEEcCCC---------------CceeeCCCCCCHHHHHHHHhhcccCCCceEE
Q 037346 928 EPALVIEATKPNNSRPSHGEVNIRHLQVRYAPNL---------------PLVLRGRTGSGKSTLIQTLFRIVESTAGHIL 992 (1156)
Q Consensus 928 e~~~~~~~~~~~~~~p~~g~I~~~~Vsf~Y~~~~---------------~~vL~G~SGsGKSTL~~lL~rl~~p~~G~I~ 992 (1156)
|.... .. .......|.|+|+||+|+|+++. .++|+|+||||||||+++|+|+|+|++|+|+
T Consensus 440 e~~~~---~~-~~~~~~~~~i~~~~vsf~y~~~~~~il~~i~l~i~~G~~vaivG~sGsGKSTL~~ll~g~~~p~~G~I~ 515 (694)
T TIGR01846 440 EPRSA---GL-AALPELRGAITFENIRFRYAPDSPEVLSNLNLDIKPGEFIGIVGPSGSGKSTLTKLLQRLYTPQHGQVL 515 (694)
T ss_pred CccCC---CC-CCCCCCCCeEEEEEEEEEcCCCCccccccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEE
Confidence 64321 10 01112357899999999996543 3456699999999999999999999999999
Q ss_pred EcCeeCCCCChHHHhhcCeeeccccccccccchhccCCCC-CCCHHHHHHHHHHcCCChHHHhhcCCcccc---------
Q 037346 993 IDGKDISLIGLHDLRTRLSIIPQDPTMFEGTTRSNLDPLE-EHADEQIWEALDKCQLGDEVRKKKGKLDSQ--------- 1062 (1156)
Q Consensus 993 idG~di~~i~~~~LR~~i~~VpQdp~LF~gTIr~Nl~~~~-~~~deei~~al~~~~l~~~i~~lp~gl~s~--------- 1062 (1156)
+||+|+++++.+++|+++++|||||++|+|||||||.+++ +.+++++++|++.+++++++.++|+||||.
T Consensus 516 idg~~i~~~~~~~~r~~i~~v~q~~~lf~~ti~eNi~~~~~~~~~~~i~~a~~~~~l~~~i~~lp~gl~t~i~~~g~~LS 595 (694)
T TIGR01846 516 VDGVDLAIADPAWLRRQMGVVLQENVLFSRSIRDNIALCNPGAPFEHVIHAAKLAGAHDFISELPQGYNTEVGEKGANLS 595 (694)
T ss_pred ECCEehhhCCHHHHHHhCeEEccCCeehhhhHHHHHhcCCCCCCHHHHHHHHHHcChHHHHHhCcCccCcEecCCCCCCC
Confidence 9999999999999999999999999999999999999865 467999999999999999999999999975
Q ss_pred ---------ccccccCCCEEEEecCCcCCCHHHHHHHHHHHHHhcCCceEEEeecCcccccccCEEEEEeCcEEeeecCh
Q 037346 1063 ---------GRVLLKKSKVLVLDEATASVDTATDNQIQQTLRQHFSDCTVVTIAHRITSVLDSAMVLLLNHGLIKEYDSP 1133 (1156)
Q Consensus 1063 ---------ARALLr~~~ILiLDEaTS~LD~~te~~I~~~l~~~~~~~TvI~IaHrl~ti~~~D~I~Vl~~G~IvE~G~~ 1133 (1156)
||||+++|+|||||||||+||++||+.|.+.|++..+++|+|+||||++++..||+|+||++|+|+|.|+|
T Consensus 596 gGq~qri~lARall~~~~ililDEpts~LD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~~d~ii~l~~G~i~~~g~~ 675 (694)
T TIGR01846 596 GGQRQRIAIARALVGNPRILIFDEATSALDYESEALIMRNMREICRGRTVIIIAHRLSTVRACDRIIVLEKGQIAESGRH 675 (694)
T ss_pred HHHHHHHHHHHHHHhCCCEEEEECCCcCCCHHHHHHHHHHHHHHhCCCEEEEEeCChHHHHhCCEEEEEeCCEEEEeCCH
Confidence 89999999999999999999999999999999998889999999999999999999999999999999999
Q ss_pred hHHhcCCCChHHHHHHHH
Q 037346 1134 TKLLENKSSSFAQLVAEY 1151 (1156)
Q Consensus 1134 ~eLl~~~~g~f~~l~~~~ 1151 (1156)
++|+++ +|.|++|++++
T Consensus 676 ~~l~~~-~~~y~~l~~~~ 692 (694)
T TIGR01846 676 EELLAL-QGLYARLWQQQ 692 (694)
T ss_pred HHHHHc-CChHHHHHHhh
Confidence 999985 69999999864
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. |
| >PRK10762 D-ribose transporter ATP binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4e-61 Score=583.09 Aligned_cols=423 Identities=21% Similarity=0.367 Sum_probs=326.3
Q ss_pred cEEEeeeEEEeCCCCCCCccccceEEeeCCeEEEEEcCCCCChHHHHHHHhCCCCCCCcEEEEcC--------------e
Q 037346 357 AIEIIDGSFSWDFSSPNPTLRNINLKVFHGMRVAVCGTVGSGKSSCLSCILGGVPKESGIIRLCG--------------T 422 (1156)
Q Consensus 357 ~i~~~~~~f~~~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKSTll~~i~g~~~~~~G~i~~~g--------------~ 422 (1156)
.++++|++++|+ ++++|+|+||+|++|++++|+||||||||||+++|+|+++|++|+|.++| .
T Consensus 4 ~i~~~~l~~~~~---~~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~ 80 (501)
T PRK10762 4 LLQLKGIDKAFP---GVKALSGAALNVYPGRVMALVGENGAGKSTMMKVLTGIYTRDAGSILYLGKEVTFNGPKSSQEAG 80 (501)
T ss_pred eEEEeeeEEEeC---CeEEeeeeeEEEcCCeEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHHHhCC
Confidence 589999999996 35799999999999999999999999999999999999999999999987 2
Q ss_pred EEEEecCCcCCC-ccHHHHhhcCCC-------CCH----HHHHHHHHHhCCchhhhhCCCCCccccccCCCCCCHHHHHH
Q 037346 423 KAYVAQSPWIQS-GKIEENILFGKE-------MDR----ERYERVLEACSLKKDLEVLPFGDQTIIGERGINLSGGQKQR 490 (1156)
Q Consensus 423 ~~~v~Q~~~~~~-~ti~eni~~~~~-------~~~----~~~~~~~~~~~l~~~~~~~~~g~~t~v~~~g~~LSgGqkqR 490 (1156)
++|++|++.++. .|++||+.++.. .+. ++..++++.+++.+.. .....+||||||||
T Consensus 81 i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-----------~~~~~~LSgG~~qr 149 (501)
T PRK10762 81 IGIIHQELNLIPQLTIAENIFLGREFVNRFGRIDWKKMYAEADKLLARLNLRFSS-----------DKLVGELSIGEQQM 149 (501)
T ss_pred EEEEEcchhccCCCcHHHHhhhccccccccCccCHHHHHHHHHHHHHHcCCCCCc-----------cCchhhCCHHHHHH
Confidence 799999987765 599999998632 121 2345566666664332 24456899999999
Q ss_pred HHHHHhhccCCCeeeeeCCCCCcCHHHHHHHHHHHHh--cCCCEEEEEccCCCccc-cCCEEEEEeCCeEEEccChHHHH
Q 037346 491 IQIARPLYQDADIFLLDDPFSPVDDHTGAHLFKFCWV--SSSKTVIYATHQVEFLP-AADLILVIKDGKITQAGKYSDIL 567 (1156)
Q Consensus 491 i~lAral~~~~~illlDep~s~lD~~~~~~i~~~~~~--~~~~tvi~vtH~~~~~~-~~d~i~~l~~G~i~~~g~~~~l~ 567 (1156)
++|||||+.+|++|||||||++||+.++..+.+.+.. .+|+|+|++||+++.+. .||+|++|++|+++..|+.+++.
T Consensus 150 v~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~~tvii~sHd~~~~~~~~d~i~~l~~G~i~~~~~~~~~~ 229 (501)
T PRK10762 150 VEIAKVLSFESKVIIMDEPTDALTDTETESLFRVIRELKSQGRGIVYISHRLKEIFEICDDVTVFRDGQFIAEREVADLT 229 (501)
T ss_pred HHHHHHHhcCCCEEEEeCCcCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEeCCEEEEecCcCcCC
Confidence 9999999999999999999999999999998876543 45789999999999886 59999999999998876543321
Q ss_pred hcCcchHHHHHhhhhhccCCCCCCCCCcccccccccCCCCCCCcccchhcccccCCCCcccccCccCcchhHHHHhcCcc
Q 037346 568 NSGTDFMELVGAHKQALSGLDSIDRGPVSERKSINKENDGTSTTNEIVNKEENKNFQSDDEAALPKGQLVQEEEREKGKV 647 (1156)
Q Consensus 568 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~g~~ 647 (1156)
.. +.... ..
T Consensus 230 ~~-----~~~~~---~~--------------------------------------------------------------- 238 (501)
T PRK10762 230 ED-----SLIEM---MV--------------------------------------------------------------- 238 (501)
T ss_pred HH-----HHHHH---hc---------------------------------------------------------------
Confidence 00 00000 00
Q ss_pred cHHHHHHHHHHhccchHHHHHHHHHHHHHHHHhhhhhhhhhccccccccCCCCCchhhHHHHHHHHHHHHHHHHHHHHHH
Q 037346 648 GFSVYWKYMTTAYGGVLVPFILLAQIIFQIFQIGSNYWMAWATPVAKDVNPAVGASTLIIVYVGAGYKTATQLFNKMHVC 727 (1156)
Q Consensus 648 ~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~ 727 (1156)
+ .
T Consensus 239 -------------~-----------------------------~------------------------------------ 240 (501)
T PRK10762 239 -------------G-----------------------------R------------------------------------ 240 (501)
T ss_pred -------------C-----------------------------C------------------------------------
Confidence 0 0
Q ss_pred hccccccccccccccchhhhhcccccccchhhhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 037346 728 IFRAPMYFFDSTPSGRILNRVSENVKWADQSAADMDIPYDIGAFAFSMIQLLGIIVVMSLVAWQVLIVFVPVIATFIWYQ 807 (1156)
Q Consensus 728 ll~~p~~ff~~~~~G~il~R~s~d~~~~d~~~~d~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~ 807 (1156)
+. ... .|
T Consensus 241 -------------------~~------~~~------~~------------------------------------------ 247 (501)
T PRK10762 241 -------------------KL------EDQ------YP------------------------------------------ 247 (501)
T ss_pred -------------------Cc------ccc------cc------------------------------------------
Confidence 00 000 00
Q ss_pred HHHHHHHHHHHHHHhHhhChHHHHHHhhccchhhhhhcchHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Q 037346 808 QYYITSTRELSRLIGVCKAPVIQQFSETISGSTTIRSLDQELRFRDTNMKLIDEYSRPKFHIAGAMEWLRFCIDMLSSIT 887 (1156)
Q Consensus 808 ~~~~~~~~~~~~~~~~~~s~~~~~~~e~l~Gi~tIra~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 887 (1156)
T Consensus 248 -------------------------------------------------------------------------------- 247 (501)
T PRK10762 248 -------------------------------------------------------------------------------- 247 (501)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHHHcCCCccchHHHHHHHhHHHHHHHHhhcCCCCCcccccCCCCCCCCCCCCeEEEEEEEEEEcCCCCceeeC
Q 037346 888 FAFSLAFLISVPNGIIHPYKNLERKIISVERILQCACIPSEPALVIEATKPNNSRPSHGEVNIRHLQVRYAPNLPLVLRG 967 (1156)
Q Consensus 888 ~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~Ri~~~~~~~~e~~~~~~~~~~~~~~p~~g~I~~~~Vsf~Y~~~~~~vL~G 967 (1156)
. .. ..+.++....+. .. .. .++|++|..++++.++|.|
T Consensus 248 ------------~--~~-------------------~~~~~~~l~~~~--l~------~~-~l~~vsl~i~~Ge~~~liG 285 (501)
T PRK10762 248 ------------R--LD-------------------KAPGEVRLKVDN--LS------GP-GVNDVSFTLRKGEILGVSG 285 (501)
T ss_pred ------------c--cc-------------------cCCCCcEEEEeC--cc------cC-CcccceEEEcCCcEEEEec
Confidence 0 00 000000000000 00 01 3899999999999999999
Q ss_pred CCCCCHHHHHHHHhhcccCCCceEEEcCeeCCCCCh-HHHhhcCeeecccc---ccc-cccchhccCCCC-----C----
Q 037346 968 RTGSGKSTLIQTLFRIVESTAGHILIDGKDISLIGL-HDLRTRLSIIPQDP---TMF-EGTTRSNLDPLE-----E---- 1033 (1156)
Q Consensus 968 ~SGsGKSTL~~lL~rl~~p~~G~I~idG~di~~i~~-~~LR~~i~~VpQdp---~LF-~gTIr~Nl~~~~-----~---- 1033 (1156)
+||||||||+++|.|+++|++|+|.++|.++...+. +.+|++++||||+| .+| .-|+++|+.+.. .
T Consensus 286 ~NGsGKSTLl~~l~G~~~p~~G~I~~~g~~i~~~~~~~~~~~~i~~v~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~ 365 (501)
T PRK10762 286 LMGAGRTELMKVLYGALPRTSGYVTLDGHEVVTRSPQDGLANGIVYISEDRKRDGLVLGMSVKENMSLTALRYFSRAGGS 365 (501)
T ss_pred CCCCCHHHHHHHHhCCCCCCceEEEECCEECCCCCHHHHHHCCCEEecCccccCCCcCCCcHHHHhhhhhhhhhcccccc
Confidence 999999999999999999999999999999987665 34678899999997 355 469999996421 0
Q ss_pred CC----HHHHHHHHHHcCCC-hHHHhhcCCcccc-------ccccccCCCEEEEecCCcCCCHHHHHHHHHHHHHhc-CC
Q 037346 1034 HA----DEQIWEALDKCQLG-DEVRKKKGKLDSQ-------GRVLLKKSKVLVLDEATASVDTATDNQIQQTLRQHF-SD 1100 (1156)
Q Consensus 1034 ~~----deei~~al~~~~l~-~~i~~lp~gl~s~-------ARALLr~~~ILiLDEaTS~LD~~te~~I~~~l~~~~-~~ 1100 (1156)
.. ++++.++++.+++. +.....+..|..+ ||||+.+|+||||||||++||+.+.+.+.+.|+++. ++
T Consensus 366 ~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGekqrv~lA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g 445 (501)
T PRK10762 366 LKHADEQQAVSDFIRLFNIKTPSMEQAIGLLSGGNQQKVAIARGLMTRPKVLILDEPTRGVDVGAKKEIYQLINQFKAEG 445 (501)
T ss_pred cCHHHHHHHHHHHHHhcCCCCCCccCchhhCCHHHHHHHHHHHHHhhCCCEEEEcCCCCCCCHhHHHHHHHHHHHHHHCC
Confidence 11 34578899999994 4555555555544 899999999999999999999999999999999874 47
Q ss_pred ceEEEeecCcccccc-cCEEEEEeCcEEeeecChhHHh
Q 037346 1101 CTVVTIAHRITSVLD-SAMVLLLNHGLIKEYDSPTKLL 1137 (1156)
Q Consensus 1101 ~TvI~IaHrl~ti~~-~D~I~Vl~~G~IvE~G~~~eLl 1137 (1156)
+|||+|||+++.+.. ||+|++|++|+|++.|+++++.
T Consensus 446 ~tviivtHd~~~~~~~~d~v~~l~~G~i~~~~~~~~~~ 483 (501)
T PRK10762 446 LSIILVSSEMPEVLGMSDRILVMHEGRISGEFTREQAT 483 (501)
T ss_pred CEEEEEcCCHHHHHhhCCEEEEEECCEEEEEeccccCC
Confidence 899999999998764 9999999999999999988764
|
|
| >PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-61 Score=584.40 Aligned_cols=436 Identities=24% Similarity=0.372 Sum_probs=333.5
Q ss_pred cEEEeeeEEEeCCCCCCCccccceEEeeCCeEEEEEcCCCCChHHHHHHHhCCCCCCCcEEEEcCe--------------
Q 037346 357 AIEIIDGSFSWDFSSPNPTLRNINLKVFHGMRVAVCGTVGSGKSSCLSCILGGVPKESGIIRLCGT-------------- 422 (1156)
Q Consensus 357 ~i~~~~~~f~~~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKSTll~~i~g~~~~~~G~i~~~g~-------------- 422 (1156)
.++++|++++|+ ++++|+|+||+|++|++++|+||||||||||+++|+|+++|++|+|.++|.
T Consensus 11 ~l~~~~l~~~~~---~~~il~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~ 87 (510)
T PRK15439 11 LLCARSISKQYS---GVEVLKGIDFTLHAGEVHALLGGNGAGKSTLMKIIAGIVPPDSGTLEIGGNPCARLTPAKAHQLG 87 (510)
T ss_pred eEEEEeEEEEeC---CceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCCCCHHHHHhCC
Confidence 599999999996 357999999999999999999999999999999999999999999999872
Q ss_pred EEEEecCCcCCC-ccHHHHhhcCCCCC---HHHHHHHHHHhCCchhhhhCCCCCccccccCCCCCCHHHHHHHHHHHhhc
Q 037346 423 KAYVAQSPWIQS-GKIEENILFGKEMD---RERYERVLEACSLKKDLEVLPFGDQTIIGERGINLSGGQKQRIQIARPLY 498 (1156)
Q Consensus 423 ~~~v~Q~~~~~~-~ti~eni~~~~~~~---~~~~~~~~~~~~l~~~~~~~~~g~~t~v~~~g~~LSgGqkqRi~lAral~ 498 (1156)
++|++|++.++. .|++||+.++.... +++..++++.+++.+.. .....+||||||||++|||||+
T Consensus 88 i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~l~~~~l~~~~-----------~~~~~~LSgG~~qrv~la~aL~ 156 (510)
T PRK15439 88 IYLVPQEPLLFPNLSVKENILFGLPKRQASMQKMKQLLAALGCQLDL-----------DSSAGSLEVADRQIVEILRGLM 156 (510)
T ss_pred EEEEeccCccCCCCcHHHHhhcccccchHHHHHHHHHHHHcCCCccc-----------cCChhhCCHHHHHHHHHHHHHH
Confidence 789999998765 59999999875321 34556677777775433 2445689999999999999999
Q ss_pred cCCCeeeeeCCCCCcCHHHHHHHHHHHHh--cCCCEEEEEccCCCccc-cCCEEEEEeCCeEEEccChHHHHhcCcchHH
Q 037346 499 QDADIFLLDDPFSPVDDHTGAHLFKFCWV--SSSKTVIYATHQVEFLP-AADLILVIKDGKITQAGKYSDILNSGTDFME 575 (1156)
Q Consensus 499 ~~~~illlDep~s~lD~~~~~~i~~~~~~--~~~~tvi~vtH~~~~~~-~~d~i~~l~~G~i~~~g~~~~l~~~~~~~~~ 575 (1156)
.+|++|||||||++||+.+.+++.+.+.. .+|+|+|++||+++.+. .||+|++|++|++++.|+++++....
T Consensus 157 ~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tiiivtHd~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~~----- 231 (510)
T PRK15439 157 RDSRILILDEPTASLTPAETERLFSRIRELLAQGVGIVFISHKLPEIRQLADRISVMRDGTIALSGKTADLSTDD----- 231 (510)
T ss_pred cCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEecChHHcCHHH-----
Confidence 99999999999999999999999876643 45899999999999886 59999999999999999887654210
Q ss_pred HHHhhhhhccCCCCCCCCCcccccccccCCCCCCCcccchhcccccCCCCcccccCccCcchhHHHHhcCcccHHHHHHH
Q 037346 576 LVGAHKQALSGLDSIDRGPVSERKSINKENDGTSTTNEIVNKEENKNFQSDDEAALPKGQLVQEEEREKGKVGFSVYWKY 655 (1156)
Q Consensus 576 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~g~~~~~~~~~y 655 (1156)
........ . . .. . . . ... . +
T Consensus 232 ~~~~~~~~-----~--~---------~~-~---------------~---~---------------~~~--~-----~--- 251 (510)
T PRK15439 232 IIQAITPA-----A--R---------EK-S---------------L---S---------------ASQ--K-----L--- 251 (510)
T ss_pred HHHHHhCc-----c--c---------cc-c---------------c---c---------------ccc--c-----c---
Confidence 00000000 0 0 00 0 0 0 000 0 0
Q ss_pred HHHhccchHHHHHHHHHHHHHHHHhhhhhhhhhccccccccCCCCCchhhHHHHHHHHHHHHHHHHHHHHHHhccccccc
Q 037346 656 MTTAYGGVLVPFILLAQIIFQIFQIGSNYWMAWATPVAKDVNPAVGASTLIIVYVGAGYKTATQLFNKMHVCIFRAPMYF 735 (1156)
Q Consensus 656 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~ll~~p~~f 735 (1156)
+..
T Consensus 252 ----------------------------------------------------------------------------~~~- 254 (510)
T PRK15439 252 ----------------------------------------------------------------------------WLE- 254 (510)
T ss_pred ----------------------------------------------------------------------------ccc-
Confidence 000
Q ss_pred cccccccchhhhhcccccccchhhhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 037346 736 FDSTPSGRILNRVSENVKWADQSAADMDIPYDIGAFAFSMIQLLGIIVVMSLVAWQVLIVFVPVIATFIWYQQYYITSTR 815 (1156)
Q Consensus 736 f~~~~~G~il~R~s~d~~~~d~~~~d~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~~~~~ 815 (1156)
|.. .+
T Consensus 255 ~~~----------------~~----------------------------------------------------------- 259 (510)
T PRK15439 255 LPG----------------NR----------------------------------------------------------- 259 (510)
T ss_pred ccc----------------cc-----------------------------------------------------------
Confidence 000 00
Q ss_pred HHHHHHhHhhChHHHHHHhhccchhhhhhcchHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 037346 816 ELSRLIGVCKAPVIQQFSETISGSTTIRSLDQELRFRDTNMKLIDEYSRPKFHIAGAMEWLRFCIDMLSSITFAFSLAFL 895 (1156)
Q Consensus 816 ~~~~~~~~~~s~~~~~~~e~l~Gi~tIra~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 895 (1156)
.
T Consensus 260 ---------~---------------------------------------------------------------------- 260 (510)
T PRK15439 260 ---------R---------------------------------------------------------------------- 260 (510)
T ss_pred ---------c----------------------------------------------------------------------
Confidence 0
Q ss_pred HHcCCCccchHHHHHHHhHHHHHHHHhhcCCCCCcccccCCCCCCCCCCCCeEEEEEEEEEEcCCCCceeeCCCCCCHHH
Q 037346 896 ISVPNGIIHPYKNLERKIISVERILQCACIPSEPALVIEATKPNNSRPSHGEVNIRHLQVRYAPNLPLVLRGRTGSGKST 975 (1156)
Q Consensus 896 ~~~~~~~~~~~~~~~~~~~s~~Ri~~~~~~~~e~~~~~~~~~~~~~~p~~g~I~~~~Vsf~Y~~~~~~vL~G~SGsGKST 975 (1156)
.. -+.++....+. .. +. .++||+|..++++.++|.|+|||||||
T Consensus 261 ---~~------------------------~~~~~~l~~~~--l~------~~-~l~~isl~i~~Ge~~~l~G~NGsGKST 304 (510)
T PRK15439 261 ---QQ------------------------AAGAPVLTVED--LT------GE-GFRNISLEVRAGEILGLAGVVGAGRTE 304 (510)
T ss_pred ---cc------------------------CCCCceEEEeC--CC------CC-CccceeEEEcCCcEEEEECCCCCCHHH
Confidence 00 00000000000 00 01 389999999999999999999999999
Q ss_pred HHHHHhhcccCCCceEEEcCeeCCCCChHH-HhhcCeeecccc---ccccc-cchhccCCC-----C---CCC--HHHHH
Q 037346 976 LIQTLFRIVESTAGHILIDGKDISLIGLHD-LRTRLSIIPQDP---TMFEG-TTRSNLDPL-----E---EHA--DEQIW 1040 (1156)
Q Consensus 976 L~~lL~rl~~p~~G~I~idG~di~~i~~~~-LR~~i~~VpQdp---~LF~g-TIr~Nl~~~-----~---~~~--deei~ 1040 (1156)
|+++|.|+.+|++|+|.++|.++...+... +|++++||||++ .+|.. |+.+|+... . ... ++++.
T Consensus 305 Ll~~i~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~i~~v~q~~~~~~l~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~~ 384 (510)
T PRK15439 305 LAETLYGLRPARGGRIMLNGKEINALSTAQRLARGLVYLPEDRQSSGLYLDAPLAWNVCALTHNRRGFWIKPARENAVLE 384 (510)
T ss_pred HHHHHcCCCCCCCcEEEECCEECCCCCHHHHHhCCcEECCCChhhCCccCCCcHHHHHHhhhhhhhccccChHHHHHHHH
Confidence 999999999999999999999998877654 467899999996 36654 899998421 0 111 23577
Q ss_pred HHHHHcCCC-hHHHhhcCCcccc-------ccccccCCCEEEEecCCcCCCHHHHHHHHHHHHHhc-CCceEEEeecCcc
Q 037346 1041 EALDKCQLG-DEVRKKKGKLDSQ-------GRVLLKKSKVLVLDEATASVDTATDNQIQQTLRQHF-SDCTVVTIAHRIT 1111 (1156)
Q Consensus 1041 ~al~~~~l~-~~i~~lp~gl~s~-------ARALLr~~~ILiLDEaTS~LD~~te~~I~~~l~~~~-~~~TvI~IaHrl~ 1111 (1156)
++++..++. +.....+..|..+ ||||+.+|+||||||||++||+.+.+.+.+.|+++. +++|||+|+|+++
T Consensus 385 ~~l~~~~l~~~~~~~~~~~LSgG~kqrl~la~al~~~p~lLlLDEPt~gLD~~~~~~l~~~l~~l~~~g~tiIivsHd~~ 464 (510)
T PRK15439 385 RYRRALNIKFNHAEQAARTLSGGNQQKVLIAKCLEASPQLLIVDEPTRGVDVSARNDIYQLIRSIAAQNVAVLFISSDLE 464 (510)
T ss_pred HHHHHcCCCCCCccCccccCCcHHHHHHHHHHHHhhCCCEEEECCCCcCcChhHHHHHHHHHHHHHhCCCEEEEECCCHH
Confidence 889999996 5565556666544 899999999999999999999999999999998864 4789999999999
Q ss_pred cccc-cCEEEEEeCcEEeeecChhHHhc
Q 037346 1112 SVLD-SAMVLLLNHGLIKEYDSPTKLLE 1138 (1156)
Q Consensus 1112 ti~~-~D~I~Vl~~G~IvE~G~~~eLl~ 1138 (1156)
.+.+ ||+|++|++|+|+..|+++++..
T Consensus 465 ~i~~~~d~i~~l~~G~i~~~~~~~~~~~ 492 (510)
T PRK15439 465 EIEQMADRVLVMHQGEISGALTGAAINV 492 (510)
T ss_pred HHHHhCCEEEEEECCEEEEEEccccCCH
Confidence 9875 99999999999999999988764
|
|
| >PRK13549 xylose transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-61 Score=584.12 Aligned_cols=430 Identities=24% Similarity=0.355 Sum_probs=327.0
Q ss_pred cEEEeeeEEEeCCCCCCCccccceEEeeCCeEEEEEcCCCCChHHHHHHHhCCCCC--CCcEEEEcCe------------
Q 037346 357 AIEIIDGSFSWDFSSPNPTLRNINLKVFHGMRVAVCGTVGSGKSSCLSCILGGVPK--ESGIIRLCGT------------ 422 (1156)
Q Consensus 357 ~i~~~~~~f~~~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKSTll~~i~g~~~~--~~G~i~~~g~------------ 422 (1156)
.++++|++++|+ ++++|+|+||+|++||+++|+||||||||||+++|+|+++| ++|+|.++|.
T Consensus 5 ~l~~~nl~~~~~---~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~ 81 (506)
T PRK13549 5 LLEMKNITKTFG---GVKALDNVSLKVRAGEIVSLCGENGAGKSTLMKVLSGVYPHGTYEGEIIFEGEELQASNIRDTER 81 (506)
T ss_pred eEEEeeeEEEeC---CeEeecceeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEECCCCCHHHHHH
Confidence 589999999996 35799999999999999999999999999999999999996 8999999872
Q ss_pred --EEEEecCCcCCC-ccHHHHhhcCCC------CCH----HHHHHHHHHhCCchhhhhCCCCCccccccCCCCCCHHHHH
Q 037346 423 --KAYVAQSPWIQS-GKIEENILFGKE------MDR----ERYERVLEACSLKKDLEVLPFGDQTIIGERGINLSGGQKQ 489 (1156)
Q Consensus 423 --~~~v~Q~~~~~~-~ti~eni~~~~~------~~~----~~~~~~~~~~~l~~~~~~~~~g~~t~v~~~g~~LSgGqkq 489 (1156)
++|++|+|.++. .|++||+.++.. .+. ++.+++++..++.... .....+|||||||
T Consensus 82 ~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-----------~~~~~~LSgGqkq 150 (506)
T PRK13549 82 AGIAIIHQELALVKELSVLENIFLGNEITPGGIMDYDAMYLRAQKLLAQLKLDINP-----------ATPVGNLGLGQQQ 150 (506)
T ss_pred CCeEEEEeccccCCCCcHHHHhhhcccccccCCcCHHHHHHHHHHHHHHcCCCCCc-----------ccchhhCCHHHHH
Confidence 799999997765 599999988642 121 2344556555553322 3455789999999
Q ss_pred HHHHHHhhccCCCeeeeeCCCCCcCHHHHHHHHHHHHh--cCCCEEEEEccCCCccc-cCCEEEEEeCCeEEEccChHHH
Q 037346 490 RIQIARPLYQDADIFLLDDPFSPVDDHTGAHLFKFCWV--SSSKTVIYATHQVEFLP-AADLILVIKDGKITQAGKYSDI 566 (1156)
Q Consensus 490 Ri~lAral~~~~~illlDep~s~lD~~~~~~i~~~~~~--~~~~tvi~vtH~~~~~~-~~d~i~~l~~G~i~~~g~~~~l 566 (1156)
|++|||||+.+|+++||||||++||+..+..+.+.+.. .+|+|+|++||+++.+. .||+|++|++|+++..|+.+++
T Consensus 151 rv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~~tvi~~tH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~ 230 (506)
T PRK13549 151 LVEIAKALNKQARLLILDEPTASLTESETAVLLDIIRDLKAHGIACIYISHKLNEVKAISDTICVIRDGRHIGTRPAAGM 230 (506)
T ss_pred HHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCcHHHHHHhcCEEEEEECCEEeeecccccC
Confidence 99999999999999999999999999999998876643 45889999999999886 5999999999999987765432
Q ss_pred HhcCcchHHHHHhhhhhccCCCCCCCCCcccccccccCCCCCCCcccchhcccccCCCCcccccCccCcchhHHHHhcCc
Q 037346 567 LNSGTDFMELVGAHKQALSGLDSIDRGPVSERKSINKENDGTSTTNEIVNKEENKNFQSDDEAALPKGQLVQEEEREKGK 646 (1156)
Q Consensus 567 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~g~ 646 (1156)
... +.....
T Consensus 231 ~~~-----~~~~~~------------------------------------------------------------------ 239 (506)
T PRK13549 231 TED-----DIITMM------------------------------------------------------------------ 239 (506)
T ss_pred CHH-----HHHHHh------------------------------------------------------------------
Confidence 110 000000
Q ss_pred ccHHHHHHHHHHhccchHHHHHHHHHHHHHHHHhhhhhhhhhccccccccCCCCCchhhHHHHHHHHHHHHHHHHHHHHH
Q 037346 647 VGFSVYWKYMTTAYGGVLVPFILLAQIIFQIFQIGSNYWMAWATPVAKDVNPAVGASTLIIVYVGAGYKTATQLFNKMHV 726 (1156)
Q Consensus 647 ~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~ 726 (1156)
. +. .. ..
T Consensus 240 ---------~----~~----------------------------~~-----~~--------------------------- 246 (506)
T PRK13549 240 ---------V----GR----------------------------EL-----TA--------------------------- 246 (506)
T ss_pred ---------h----Cc----------------------------Cc-----cc---------------------------
Confidence 0 00 00 00
Q ss_pred HhccccccccccccccchhhhhcccccccchhhhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 037346 727 CIFRAPMYFFDSTPSGRILNRVSENVKWADQSAADMDIPYDIGAFAFSMIQLLGIIVVMSLVAWQVLIVFVPVIATFIWY 806 (1156)
Q Consensus 727 ~ll~~p~~ff~~~~~G~il~R~s~d~~~~d~~~~d~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~ 806 (1156)
..|.. ..+.+
T Consensus 247 ---~~~~~---~~~~~---------------------------------------------------------------- 256 (506)
T PRK13549 247 ---LYPRE---PHTIG---------------------------------------------------------------- 256 (506)
T ss_pred ---ccccc---ccCCC----------------------------------------------------------------
Confidence 00000 00000
Q ss_pred HHHHHHHHHHHHHHHhHhhChHHHHHHhhccchhhhhhcchHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Q 037346 807 QQYYITSTRELSRLIGVCKAPVIQQFSETISGSTTIRSLDQELRFRDTNMKLIDEYSRPKFHIAGAMEWLRFCIDMLSSI 886 (1156)
Q Consensus 807 ~~~~~~~~~~~~~~~~~~~s~~~~~~~e~l~Gi~tIra~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 886 (1156)
T Consensus 257 -------------------------------------------------------------------------------- 256 (506)
T PRK13549 257 -------------------------------------------------------------------------------- 256 (506)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHHHHcCCCccchHHHHHHHhHHHHHHHHhhcCCCCCcccccCCCCCCCCCC-CCeEEEEEEEEEEcCCCCcee
Q 037346 887 TFAFSLAFLISVPNGIIHPYKNLERKIISVERILQCACIPSEPALVIEATKPNNSRPS-HGEVNIRHLQVRYAPNLPLVL 965 (1156)
Q Consensus 887 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~Ri~~~~~~~~e~~~~~~~~~~~~~~p~-~g~I~~~~Vsf~Y~~~~~~vL 965 (1156)
++.. +.......++. .+...++||+|..++++.++|
T Consensus 257 -----------------------------------------~~~l--~~~~l~~~~~~~~~~~vl~~vsl~i~~Ge~~~l 293 (506)
T PRK13549 257 -----------------------------------------EVIL--EVRNLTAWDPVNPHIKRVDDVSFSLRRGEILGI 293 (506)
T ss_pred -----------------------------------------CceE--EEecCccccccccccccccceeeEEcCCcEEEE
Confidence 0000 00000011111 122368999999999999999
Q ss_pred eCCCCCCHHHHHHHHhhccc-CCCceEEEcCeeCCCCCh-HHHhhcCeeecccc---cccc-ccchhccCCCC-----C-
Q 037346 966 RGRTGSGKSTLIQTLFRIVE-STAGHILIDGKDISLIGL-HDLRTRLSIIPQDP---TMFE-GTTRSNLDPLE-----E- 1033 (1156)
Q Consensus 966 ~G~SGsGKSTL~~lL~rl~~-p~~G~I~idG~di~~i~~-~~LR~~i~~VpQdp---~LF~-gTIr~Nl~~~~-----~- 1033 (1156)
.|+||||||||+++|+|+++ |++|+|.++|.++...+. +.+|+.++||||++ .+|. -|+.+|+.... .
T Consensus 294 ~G~NGsGKSTLlk~i~Gl~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~ 373 (506)
T PRK13549 294 AGLVGAGRTELVQCLFGAYPGRWEGEIFIDGKPVKIRNPQQAIAQGIAMVPEDRKRDGIVPVMGVGKNITLAALDRFTGG 373 (506)
T ss_pred eCCCCCCHHHHHHHHhCCCCCCCCcEEEECCEECCCCCHHHHHHCCCEEeCcchhhCCCcCCCCHHHHhhhhhhhhhccC
Confidence 99999999999999999998 599999999999875543 45677899999997 3564 59999996421 1
Q ss_pred --CC----HHHHHHHHHHcCCC-hHHHhhcCCcccc-------ccccccCCCEEEEecCCcCCCHHHHHHHHHHHHHhc-
Q 037346 1034 --HA----DEQIWEALDKCQLG-DEVRKKKGKLDSQ-------GRVLLKKSKVLVLDEATASVDTATDNQIQQTLRQHF- 1098 (1156)
Q Consensus 1034 --~~----deei~~al~~~~l~-~~i~~lp~gl~s~-------ARALLr~~~ILiLDEaTS~LD~~te~~I~~~l~~~~- 1098 (1156)
.+ .+++.++++.+++. +.....+..|..+ ||||+.+|+||||||||++||+.+.+.+.+.|+++.
T Consensus 374 ~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~kqrv~lA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~ 453 (506)
T PRK13549 374 SRIDDAAELKTILESIQRLKVKTASPELAIARLSGGNQQKAVLAKCLLLNPKILILDEPTRGIDVGAKYEIYKLINQLVQ 453 (506)
T ss_pred cccChHHHHHHHHHHHHhcCccCCCcccccccCCHHHHHHHHHHHHHhhCCCEEEEcCCCCCcCHhHHHHHHHHHHHHHH
Confidence 11 24578899999995 4555555555544 899999999999999999999999999999998764
Q ss_pred CCceEEEeecCcccccc-cCEEEEEeCcEEeeecChhHHh
Q 037346 1099 SDCTVVTIAHRITSVLD-SAMVLLLNHGLIKEYDSPTKLL 1137 (1156)
Q Consensus 1099 ~~~TvI~IaHrl~ti~~-~D~I~Vl~~G~IvE~G~~~eLl 1137 (1156)
+++|||+|||+++.+.. ||+|++|++|+|+..|+++++.
T Consensus 454 ~g~tvi~~sHd~~~~~~~~d~v~~l~~G~i~~~~~~~~~~ 493 (506)
T PRK13549 454 QGVAIIVISSELPEVLGLSDRVLVMHEGKLKGDLINHNLT 493 (506)
T ss_pred CCCEEEEECCCHHHHHHhCCEEEEEECCEEEEEeccccCC
Confidence 47899999999998865 9999999999999999988764
|
|
| >PRK09700 D-allose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.4e-61 Score=584.54 Aligned_cols=428 Identities=22% Similarity=0.337 Sum_probs=327.0
Q ss_pred cEEEeeeEEEeCCCCCCCccccceEEeeCCeEEEEEcCCCCChHHHHHHHhCCCCCCCcEEEEcC--------------e
Q 037346 357 AIEIIDGSFSWDFSSPNPTLRNINLKVFHGMRVAVCGTVGSGKSSCLSCILGGVPKESGIIRLCG--------------T 422 (1156)
Q Consensus 357 ~i~~~~~~f~~~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKSTll~~i~g~~~~~~G~i~~~g--------------~ 422 (1156)
.++++|++++|+ ++++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++| .
T Consensus 5 ~l~~~~l~~~~~---~~~il~~vs~~i~~Ge~~~liG~nGsGKSTLl~~i~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~ 81 (510)
T PRK09700 5 YISMAGIGKSFG---PVHALKSVNLTVYPGEIHALLGENGAGKSTLMKVLSGIHEPTKGTITINNINYNKLDHKLAAQLG 81 (510)
T ss_pred eEEEeeeEEEcC---CeEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCcCCCccEEEECCEECCCCCHHHHHHCC
Confidence 589999999996 35799999999999999999999999999999999999999999999987 2
Q ss_pred EEEEecCCcCCC-ccHHHHhhcCCC----------CC----HHHHHHHHHHhCCchhhhhCCCCCccccccCCCCCCHHH
Q 037346 423 KAYVAQSPWIQS-GKIEENILFGKE----------MD----RERYERVLEACSLKKDLEVLPFGDQTIIGERGINLSGGQ 487 (1156)
Q Consensus 423 ~~~v~Q~~~~~~-~ti~eni~~~~~----------~~----~~~~~~~~~~~~l~~~~~~~~~g~~t~v~~~g~~LSgGq 487 (1156)
++|++|++.++. .|++||+.++.. .+ .++..++++.+++.+.. .....+|||||
T Consensus 82 i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~-----------~~~~~~LSgG~ 150 (510)
T PRK09700 82 IGIIYQELSVIDELTVLENLYIGRHLTKKVCGVNIIDWREMRVRAAMMLLRVGLKVDL-----------DEKVANLSISH 150 (510)
T ss_pred eEEEeecccccCCCcHHHHhhhccccccccccccccCHHHHHHHHHHHHHHcCCCCCc-----------ccchhhCCHHH
Confidence 799999997765 599999987531 01 12345566666664322 34457899999
Q ss_pred HHHHHHHHhhccCCCeeeeeCCCCCcCHHHHHHHHHHHHh--cCCCEEEEEccCCCccc-cCCEEEEEeCCeEEEccChH
Q 037346 488 KQRIQIARPLYQDADIFLLDDPFSPVDDHTGAHLFKFCWV--SSSKTVIYATHQVEFLP-AADLILVIKDGKITQAGKYS 564 (1156)
Q Consensus 488 kqRi~lAral~~~~~illlDep~s~lD~~~~~~i~~~~~~--~~~~tvi~vtH~~~~~~-~~d~i~~l~~G~i~~~g~~~ 564 (1156)
|||++|||||+.+|+++||||||++||+.++..+.+.+.. .+|+|+|++||+++.+. .||+|++|++|++++.|+++
T Consensus 151 ~qrv~ia~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tiiivsHd~~~~~~~~d~v~~l~~G~i~~~g~~~ 230 (510)
T PRK09700 151 KQMLEIAKTLMLDAKVIIMDEPTSSLTNKEVDYLFLIMNQLRKEGTAIVYISHKLAEIRRICDRYTVMKDGSSVCSGMVS 230 (510)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEeeecchh
Confidence 9999999999999999999999999999999998876643 45899999999999986 59999999999999888766
Q ss_pred HHHhcCcchHHHHHhhhhhccCCCCCCCCCcccccccccCCCCCCCcccchhcccccCCCCcccccCccCcchhHHHHhc
Q 037346 565 DILNSGTDFMELVGAHKQALSGLDSIDRGPVSERKSINKENDGTSTTNEIVNKEENKNFQSDDEAALPKGQLVQEEEREK 644 (1156)
Q Consensus 565 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~ 644 (1156)
++... +..... . .. . .
T Consensus 231 ~~~~~-----~~~~~~---~-~~-----------------~---------------~----------------------- 246 (510)
T PRK09700 231 DVSND-----DIVRLM---V-GR-----------------E---------------L----------------------- 246 (510)
T ss_pred hCCHH-----HHHHHh---c-CC-----------------C---------------c-----------------------
Confidence 54210 000000 0 00 0 0
Q ss_pred CcccHHHHHHHHHHhccchHHHHHHHHHHHHHHHHhhhhhhhhhccccccccCCCCCchhhHHHHHHHHHHHHHHHHHHH
Q 037346 645 GKVGFSVYWKYMTTAYGGVLVPFILLAQIIFQIFQIGSNYWMAWATPVAKDVNPAVGASTLIIVYVGAGYKTATQLFNKM 724 (1156)
Q Consensus 645 g~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l 724 (1156)
T Consensus 247 -------------------------------------------------------------------------------- 246 (510)
T PRK09700 247 -------------------------------------------------------------------------------- 246 (510)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHhccccccccccccccchhhhhcccccccchhhhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 037346 725 HVCIFRAPMYFFDSTPSGRILNRVSENVKWADQSAADMDIPYDIGAFAFSMIQLLGIIVVMSLVAWQVLIVFVPVIATFI 804 (1156)
Q Consensus 725 ~~~ll~~p~~ff~~~~~G~il~R~s~d~~~~d~~~~d~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~ 804 (1156)
..++. +.. +
T Consensus 247 --------------------~~~~~------~~~------~--------------------------------------- 255 (510)
T PRK09700 247 --------------------QNRFN------AMK------E--------------------------------------- 255 (510)
T ss_pred --------------------ccccc------ccc------c---------------------------------------
Confidence 00000 000 0
Q ss_pred HHHHHHHHHHHHHHHHHhHhhChHHHHHHhhccchhhhhhcchHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Q 037346 805 WYQQYYITSTRELSRLIGVCKAPVIQQFSETISGSTTIRSLDQELRFRDTNMKLIDEYSRPKFHIAGAMEWLRFCIDMLS 884 (1156)
Q Consensus 805 ~~~~~~~~~~~~~~~~~~~~~s~~~~~~~e~l~Gi~tIra~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 884 (1156)
.
T Consensus 256 --------------------~----------------------------------------------------------- 256 (510)
T PRK09700 256 --------------------N----------------------------------------------------------- 256 (510)
T ss_pred --------------------c-----------------------------------------------------------
Confidence 0
Q ss_pred HHHHHHHHHHHHHcCCCccchHHHHHHHhHHHHHHHHhhcCCCCCcccccCCCCCCCCCCCCeEEEEEEEEEEcCCCCce
Q 037346 885 SITFAFSLAFLISVPNGIIHPYKNLERKIISVERILQCACIPSEPALVIEATKPNNSRPSHGEVNIRHLQVRYAPNLPLV 964 (1156)
Q Consensus 885 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~Ri~~~~~~~~e~~~~~~~~~~~~~~p~~g~I~~~~Vsf~Y~~~~~~v 964 (1156)
... ...++....+ ...... +. .++|+||..++++.++
T Consensus 257 --------------~~~-----------------------~~~~~~l~~~--~l~~~~---~~-~l~~isl~i~~Ge~~~ 293 (510)
T PRK09700 257 --------------VSN-----------------------LAHETVFEVR--NVTSRD---RK-KVRDISFSVCRGEILG 293 (510)
T ss_pred --------------ccc-----------------------CCCCcEEEEe--CccccC---CC-cccceeEEEcCCcEEE
Confidence 000 0000000000 000001 12 5899999999999999
Q ss_pred eeCCCCCCHHHHHHHHhhcccCCCceEEEcCeeCCCCCh-HHHhhcCeeecccc---ccccc-cchhccCCCCC------
Q 037346 965 LRGRTGSGKSTLIQTLFRIVESTAGHILIDGKDISLIGL-HDLRTRLSIIPQDP---TMFEG-TTRSNLDPLEE------ 1033 (1156)
Q Consensus 965 L~G~SGsGKSTL~~lL~rl~~p~~G~I~idG~di~~i~~-~~LR~~i~~VpQdp---~LF~g-TIr~Nl~~~~~------ 1033 (1156)
|.|+||||||||+++|+|+++|++|+|.++|.++...+. ..+|++++||||++ .+|.+ |+++|+.+...
T Consensus 294 l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~ 373 (510)
T PRK09700 294 FAGLVGSGRTELMNCLFGVDKRAGGEIRLNGKDISPRSPLDAVKKGMAYITESRRDNGFFPNFSIAQNMAISRSLKDGGY 373 (510)
T ss_pred EECCCCCCHHHHHHHHhCCCcCCCCeEEECCEECCCCCHHHHHHCCcEEccCccccCCCcCCCcHHHHhccccccccccc
Confidence 999999999999999999999999999999999876543 45678899999984 57764 99999864311
Q ss_pred ------CC----HHHHHHHHHHcCCC-hHHHhhcCCcccc-------ccccccCCCEEEEecCCcCCCHHHHHHHHHHHH
Q 037346 1034 ------HA----DEQIWEALDKCQLG-DEVRKKKGKLDSQ-------GRVLLKKSKVLVLDEATASVDTATDNQIQQTLR 1095 (1156)
Q Consensus 1034 ------~~----deei~~al~~~~l~-~~i~~lp~gl~s~-------ARALLr~~~ILiLDEaTS~LD~~te~~I~~~l~ 1095 (1156)
.. .+++.++++..++. +.....|..|..+ ||||+++|+|||||||||+||+.+.+.+.+.|+
T Consensus 374 ~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~qrv~lAral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~ 453 (510)
T PRK09700 374 KGAMGLFHEVDEQRTAENQRELLALKCHSVNQNITELSGGNQQKVLISKWLCCCPEVIIFDEPTRGIDVGAKAEIYKVMR 453 (510)
T ss_pred cccccccChHHHHHHHHHHHHhcCCCCCCccCccccCChHHHHHHHHHHHHhcCCCEEEECCCCCCcCHHHHHHHHHHHH
Confidence 01 23477899999996 6666666666544 899999999999999999999999999999998
Q ss_pred Hhc-CCceEEEeecCccccc-ccCEEEEEeCcEEeeecChhH
Q 037346 1096 QHF-SDCTVVTIAHRITSVL-DSAMVLLLNHGLIKEYDSPTK 1135 (1156)
Q Consensus 1096 ~~~-~~~TvI~IaHrl~ti~-~~D~I~Vl~~G~IvE~G~~~e 1135 (1156)
++. ++.|||+|||+++.+. .||+|++|++|+|++.+++.+
T Consensus 454 ~l~~~g~tvi~vsHd~~~~~~~~d~i~~l~~G~i~~~~~~~~ 495 (510)
T PRK09700 454 QLADDGKVILMVSSELPEIITVCDRIAVFCEGRLTQILTNRD 495 (510)
T ss_pred HHHHCCCEEEEEcCCHHHHHhhCCEEEEEECCEEEEEecCcc
Confidence 763 4789999999998775 599999999999999987744
|
|
| >COG4987 CydC ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-59 Score=526.84 Aligned_cols=426 Identities=20% Similarity=0.327 Sum_probs=345.1
Q ss_pred HHHHHHHHHHHHHHHHhccccccccccccccchhhhhcccccccchhhhcccchHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 037346 712 AGYKTATQLFNKMHVCIFRAPMYFFDSTPSGRILNRVSENVKWADQSAADMDIPYDIGAFAFSMIQLLGIIVVMSLVAWQ 791 (1156)
Q Consensus 712 ~~~~~~~~l~~~l~~~ll~~p~~ff~~~~~G~il~R~s~d~~~~d~~~~d~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 791 (1156)
..+++-.++|.++|+++...+..-..+..+||++||+..|++..|..+++...| .+..+...++..+.+.+++|+
T Consensus 85 AtfrvL~~lRv~~f~kl~p~sp~~~~r~r~gdLL~RLvaDVd~Ld~lyLRvi~P-----~~~a~~~~~~~~i~L~f~~~~ 159 (573)
T COG4987 85 ATFRVLSALRVRLFEKLEPLSPALLLRYRSGDLLNRLVADVDALDNLYLRVIAP-----AVVALVLIAVVTIGLSFFSIP 159 (573)
T ss_pred HHHHHHHHHHHHHHHhhccCChHHHHhcChHhHHHHHHhhHHHHhhHHHHHHhh-----HHHHHHHHHHHHHHHHHhhHH
Confidence 456888899999999999999999999999999999996666555555554444 444444445555556667777
Q ss_pred HHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHhHhhChHHHHHHhhccchhhhhhcchHHHHHHHHHHHHHHHhhHHHHHH
Q 037346 792 VLIVF-VPVIATFIWYQQYYITSTRELSRLIGVCKAPVIQQFSETISGSTTIRSLDQELRFRDTNMKLIDEYSRPKFHIA 870 (1156)
Q Consensus 792 l~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~e~l~Gi~tIra~~~e~~~~~~~~~~~~~~~~~~~~~~ 870 (1156)
+++.+ +.++++.+.+...+.+..+...+.-...++.+.+++.|.+.|....+.||+++.+.+.+.+..+...+......
T Consensus 160 ~Alll~~~ll~~lli~P~~~~~~~~~~~~~l~~~r~~lr~~~td~v~G~~EL~~~g~~~~~~~~l~~~e~~~~~~q~k~~ 239 (573)
T COG4987 160 LALLLGLILLLLLLIIPTLFYRAGRKFGAHLAQGRAALRSQFTDWVQGQAELLIFGAEDAYRTALEATEASWLKAQRKQA 239 (573)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHhhHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHH
Confidence 75543 33444455555666666666666667778899999999999999999999999999999999888888888888
Q ss_pred HHHHHHHHHHHHHHHHHHH-HHHHHHHHcCCC-----------------------cc-chHHHHHHHhHHHHHHHHhhcC
Q 037346 871 GAMEWLRFCIDMLSSITFA-FSLAFLISVPNG-----------------------II-HPYKNLERKIISVERILQCACI 925 (1156)
Q Consensus 871 ~~~~~~~~~l~~~~~~~~~-~~~~~~~~~~~~-----------------------~~-~~~~~~~~~~~s~~Ri~~~~~~ 925 (1156)
....|....+.++..+.+. ..+........| .. ....++.....|..|+.++.+.
T Consensus 240 ~~~~~~~a~~~l~~g~~v~~~l~w~a~~~~~G~~~~~~aa~~ll~~f~~~eaf~~L~~~A~~~lgq~~~Sa~Rl~~i~~q 319 (573)
T COG4987 240 RFTGLSDAILLLIAGLLVIGLLLWMAAQVGAGALAQPGAALALLVIFAALEAFEPLAPGAFQHLGQVIASARRLNDILDQ 319 (573)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCcCCCcchhHHHHHHHHHHHHHHHHhhhcchhHHHhhHHHHHHHHHhhhccC
Confidence 8888877777666554443 111111100000 01 2225666777889999987766
Q ss_pred CCCCcccccCCCCCCCCCCCC-eEEEEEEEEEEcCC---------------CCceeeCCCCCCHHHHHHHHhhcccCCCc
Q 037346 926 PSEPALVIEATKPNNSRPSHG-EVNIRHLQVRYAPN---------------LPLVLRGRTGSGKSTLIQTLFRIVESTAG 989 (1156)
Q Consensus 926 ~~e~~~~~~~~~~~~~~p~~g-~I~~~~Vsf~Y~~~---------------~~~vL~G~SGsGKSTL~~lL~rl~~p~~G 989 (1156)
++|.... ....|..+ .++++||+|+|+.. ++++|.||||||||||+++|.|.|+|++|
T Consensus 320 ~~e~~~~------~~~~~~~~~~l~~~~vsF~y~~~~~~~L~~~~l~l~~GEkvAIlG~SGsGKSTllqLl~~~~~~~~G 393 (573)
T COG4987 320 KPEVTFP------DEQTATTGQALELRNVSFTYPGQQTKALKNFNLTLAQGEKVAILGRSGSGKSTLLQLLAGAWDPQQG 393 (573)
T ss_pred CcccCCC------ccccCCccceeeeccceeecCCCccchhhccceeecCCCeEEEECCCCCCHHHHHHHHHhccCCCCC
Confidence 5554321 11112222 78999999999644 44567799999999999999999999999
Q ss_pred eEEEcCeeCCCCChHHHhhcCeeeccccccccccchhccCCCC-CCCHHHHHHHHHHcCCChHHHhhcCCcccc------
Q 037346 990 HILIDGKDISLIGLHDLRTRLSIIPQDPTMFEGTTRSNLDPLE-EHADEQIWEALDKCQLGDEVRKKKGKLDSQ------ 1062 (1156)
Q Consensus 990 ~I~idG~di~~i~~~~LR~~i~~VpQdp~LF~gTIr~Nl~~~~-~~~deei~~al~~~~l~~~i~~lp~gl~s~------ 1062 (1156)
+|..+|.+++.++.+++|+.|++++|.++||+||+|+||...+ +.+|||+|+||+++||++++++.|+||+|.
T Consensus 394 ~i~~~g~~~~~l~~~~~~e~i~vl~Qr~hlF~~Tlr~NL~lA~~~AsDEel~~aL~qvgL~~l~~~~p~gl~t~lge~G~ 473 (573)
T COG4987 394 SITLNGVEIASLDEQALRETISVLTQRVHLFSGTLRDNLRLANPDASDEELWAALQQVGLEKLLESAPDGLNTWLGEGGR 473 (573)
T ss_pred eeeECCcChhhCChhhHHHHHhhhccchHHHHHHHHHHHhhcCCCCCHHHHHHHHHHcCHHHHHHhChhhhhchhccCCC
Confidence 9999999999999999999999999999999999999998876 467999999999999999999999999975
Q ss_pred ------------ccccccCCCEEEEecCCcCCCHHHHHHHHHHHHHhcCCceEEEeecCcccccccCEEEEEeCcEEeee
Q 037346 1063 ------------GRVLLKKSKVLVLDEATASVDTATDNQIQQTLRQHFSDCTVVTIAHRITSVLDSAMVLLLNHGLIKEY 1130 (1156)
Q Consensus 1063 ------------ARALLr~~~ILiLDEaTS~LD~~te~~I~~~l~~~~~~~TvI~IaHrl~ti~~~D~I~Vl~~G~IvE~ 1130 (1156)
||+||++++++||||||.+||++||+.|.+.|.+..+|+|+|+||||+.-+..||||+|||+|+++|+
T Consensus 474 ~LSGGE~rRLAlAR~LL~dapl~lLDEPTegLD~~TE~~vL~ll~~~~~~kTll~vTHrL~~le~~drIivl~~Gkiie~ 553 (573)
T COG4987 474 RLSGGERRRLALARALLHDAPLWLLDEPTEGLDPITERQVLALLFEHAEGKTLLMVTHRLRGLERMDRIIVLDNGKIIEE 553 (573)
T ss_pred cCCchHHHHHHHHHHHHcCCCeEEecCCcccCChhhHHHHHHHHHHHhcCCeEEEEecccccHhhcCEEEEEECCeeeec
Confidence 79999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cChhHHhcCCCChHHHHHH
Q 037346 1131 DSPTKLLENKSSSFAQLVA 1149 (1156)
Q Consensus 1131 G~~~eLl~~~~g~f~~l~~ 1149 (1156)
|+|++|++ ++|.|++|++
T Consensus 554 G~~~~Ll~-~~g~~~~l~q 571 (573)
T COG4987 554 GTHAELLA-NNGRYKRLYQ 571 (573)
T ss_pred CCHHhhhc-cccHHHHHhc
Confidence 99999998 4899999975
|
|
| >TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2 | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.1e-61 Score=583.14 Aligned_cols=424 Identities=22% Similarity=0.346 Sum_probs=327.2
Q ss_pred EEEeeeEEEeCCCCCCCccccceEEeeCCeEEEEEcCCCCChHHHHHHHhCCC--CCCCcEEEEc---------------
Q 037346 358 IEIIDGSFSWDFSSPNPTLRNINLKVFHGMRVAVCGTVGSGKSSCLSCILGGV--PKESGIIRLC--------------- 420 (1156)
Q Consensus 358 i~~~~~~f~~~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKSTll~~i~g~~--~~~~G~i~~~--------------- 420 (1156)
|+++|++++|+ ++++|+|+||++++|++++|+||||||||||+++|+|+. +|++|+|.++
T Consensus 1 l~~~~l~~~~~---~~~~l~~is~~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~~~p~~G~i~~~~~~~~~~~~~~~~~~ 77 (520)
T TIGR03269 1 IEVKNLTKKFD---GKEVLKNISFTIEEGEVLGILGRSGAGKSVLMHVLRGMDQYEPTSGRIIYHVALCEKCGYVERPSK 77 (520)
T ss_pred CEEEEEEEEEC---CeEeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhhcccCCCCceEEEEeccccccccccccccc
Confidence 46899999995 357999999999999999999999999999999999996 7999999885
Q ss_pred --------C-----------------------eEEEEecC-CcCCC-ccHHHHhhcCCC---CC----HHHHHHHHHHhC
Q 037346 421 --------G-----------------------TKAYVAQS-PWIQS-GKIEENILFGKE---MD----RERYERVLEACS 460 (1156)
Q Consensus 421 --------g-----------------------~~~~v~Q~-~~~~~-~ti~eni~~~~~---~~----~~~~~~~~~~~~ 460 (1156)
| .++|++|+ +.++. .|++||+.++.. .+ .++..++++.++
T Consensus 78 ~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~g 157 (520)
T TIGR03269 78 VGEPCPVCGGTLEPEEVDFWNLSDKLRRRIRKRIAIMLQRTFALYGDDTVLDNVLEALEEIGYEGKEAVGRAVDLIEMVQ 157 (520)
T ss_pred cccccccccccccccchhhhccCHHHHHHhhhcEEEEeccccccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcC
Confidence 1 26999997 55654 599999987421 22 235566777777
Q ss_pred CchhhhhCCCCCccccccCCCCCCHHHHHHHHHHHhhccCCCeeeeeCCCCCcCHHHHHHHHHHHHh---cCCCEEEEEc
Q 037346 461 LKKDLEVLPFGDQTIIGERGINLSGGQKQRIQIARPLYQDADIFLLDDPFSPVDDHTGAHLFKFCWV---SSSKTVIYAT 537 (1156)
Q Consensus 461 l~~~~~~~~~g~~t~v~~~g~~LSgGqkqRi~lAral~~~~~illlDep~s~lD~~~~~~i~~~~~~---~~~~tvi~vt 537 (1156)
+.+..+ +...+|||||||||+|||||+.+|++|||||||++||+.+++++.+.+.. ..|+|||+||
T Consensus 158 l~~~~~-----------~~~~~LSgGq~qrv~iA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tviivt 226 (520)
T TIGR03269 158 LSHRIT-----------HIARDLSGGEKQRVVLARQLAKEPFLFLADEPTGTLDPQTAKLVHNALEEAVKASGISMVLTS 226 (520)
T ss_pred Chhhhh-----------cCcccCCHHHHHHHHHHHHHhcCCCEEEeeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEe
Confidence 754433 34578999999999999999999999999999999999999998776543 3488999999
Q ss_pred cCCCccc-cCCEEEEEeCCeEEEccChHHHHhcCcchHHHHHhhhhhccCCCCCCCCCcccccccccCCCCCCCcccchh
Q 037346 538 HQVEFLP-AADLILVIKDGKITQAGKYSDILNSGTDFMELVGAHKQALSGLDSIDRGPVSERKSINKENDGTSTTNEIVN 616 (1156)
Q Consensus 538 H~~~~~~-~~d~i~~l~~G~i~~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 616 (1156)
|+++.+. .||+|++|++|+++..|+++++... .. .... .. .. .
T Consensus 227 Hd~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~------~~----~~~~---~~-----------~~-~----------- 270 (520)
T TIGR03269 227 HWPEVIEDLSDKAIWLENGEIKEEGTPDEVVAV------FM----EGVS---EV-----------EK-E----------- 270 (520)
T ss_pred CCHHHHHHhcCEEEEEeCCEEeeecCHHHHHHH------HH----hhch---hh-----------cc-c-----------
Confidence 9999986 5999999999999988887665321 00 0000 00 00 0
Q ss_pred cccccCCCCcccccCccCcchhHHHHhcCcccHHHHHHHHHHhccchHHHHHHHHHHHHHHHHhhhhhhhhhcccccccc
Q 037346 617 KEENKNFQSDDEAALPKGQLVQEEEREKGKVGFSVYWKYMTTAYGGVLVPFILLAQIIFQIFQIGSNYWMAWATPVAKDV 696 (1156)
Q Consensus 617 ~~~~~~~~~~~~~~~~~~~~~~~e~~~~g~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 696 (1156)
.
T Consensus 271 --------~----------------------------------------------------------------------- 271 (520)
T TIGR03269 271 --------C----------------------------------------------------------------------- 271 (520)
T ss_pred --------c-----------------------------------------------------------------------
Confidence 0
Q ss_pred CCCCCchhhHHHHHHHHHHHHHHHHHHHHHHhccccccccccccccchhhhhcccccccchhhhcccchHHHHHHHHHHH
Q 037346 697 NPAVGASTLIIVYVGAGYKTATQLFNKMHVCIFRAPMYFFDSTPSGRILNRVSENVKWADQSAADMDIPYDIGAFAFSMI 776 (1156)
Q Consensus 697 ~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~ll~~p~~ff~~~~~G~il~R~s~d~~~~d~~~~d~~l~~~~~~~~~~~~ 776 (1156)
..+.++- .+. ..+
T Consensus 272 -----------------------------------------~~~~~~~--~l~----~~~-------------------- 284 (520)
T TIGR03269 272 -----------------------------------------EVEVGEP--IIK----VRN-------------------- 284 (520)
T ss_pred -----------------------------------------ccCCCCc--eEE----Eec--------------------
Confidence 0000000 000 000
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhChHHHHHHhhccchhhhhhcchHHHHHHHHH
Q 037346 777 QLLGIIVVMSLVAWQVLIVFVPVIATFIWYQQYYITSTRELSRLIGVCKAPVIQQFSETISGSTTIRSLDQELRFRDTNM 856 (1156)
Q Consensus 777 ~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~e~l~Gi~tIra~~~e~~~~~~~~ 856 (1156)
T Consensus 285 -------------------------------------------------------------------------------- 284 (520)
T TIGR03269 285 -------------------------------------------------------------------------------- 284 (520)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccchHHHHHHHhHHHHHHHHhhcCCCCCcccccCC
Q 037346 857 KLIDEYSRPKFHIAGAMEWLRFCIDMLSSITFAFSLAFLISVPNGIIHPYKNLERKIISVERILQCACIPSEPALVIEAT 936 (1156)
Q Consensus 857 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~Ri~~~~~~~~e~~~~~~~~ 936 (1156)
T Consensus 285 -------------------------------------------------------------------------------- 284 (520)
T TIGR03269 285 -------------------------------------------------------------------------------- 284 (520)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCCCC---CCCeEEEEEEEEEEcCCCCceeeCCCCCCHHHHHHHHhhcccCCCceEEEc-Ce---eCCCCC---hHHH
Q 037346 937 KPNNSRP---SHGEVNIRHLQVRYAPNLPLVLRGRTGSGKSTLIQTLFRIVESTAGHILID-GK---DISLIG---LHDL 1006 (1156)
Q Consensus 937 ~~~~~~p---~~g~I~~~~Vsf~Y~~~~~~vL~G~SGsGKSTL~~lL~rl~~p~~G~I~id-G~---di~~i~---~~~L 1006 (1156)
....++ ..+...++|++|..++++.++|.|+||||||||+++|+|+.+|++|+|.++ |. ++...+ ...+
T Consensus 285 -l~~~~~~~~~~~~~il~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~Gl~~p~~G~i~~~~g~~~~~~~~~~~~~~~~~ 363 (520)
T TIGR03269 285 -VSKRYISVDRGVVKAVDNVSLEVKEGEIFGIVGTSGAGKTTLSKIIAGVLEPTSGEVNVRVGDEWVDMTKPGPDGRGRA 363 (520)
T ss_pred -cEEEeccCCCCCceEEeeEEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEEecCCccccccccchhhHHHH
Confidence 000000 011247999999999999999999999999999999999999999999996 64 344433 2356
Q ss_pred hhcCeeeccccccccc-cchhccCCC---C-CC--CHHHHHHHHHHcCCCh-----HHHhhcCCcccc-------ccccc
Q 037346 1007 RTRLSIIPQDPTMFEG-TTRSNLDPL---E-EH--ADEQIWEALDKCQLGD-----EVRKKKGKLDSQ-------GRVLL 1067 (1156)
Q Consensus 1007 R~~i~~VpQdp~LF~g-TIr~Nl~~~---~-~~--~deei~~al~~~~l~~-----~i~~lp~gl~s~-------ARALL 1067 (1156)
|++++||||++.+|.. |+++|+... . +. .++++.++++.+++.+ +....|..|..+ ||||+
T Consensus 364 ~~~i~~v~q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~LSgGq~qrv~laral~ 443 (520)
T TIGR03269 364 KRYIGILHQEYDLYPHRTVLDNLTEAIGLELPDELARMKAVITLKMVGFDEEKAEEILDKYPDELSEGERHRVALAQVLI 443 (520)
T ss_pred hhhEEEEccCcccCCCCcHHHHHHHHHHcCCCHHHHHHHHHHHHHhCCCCCccchhhhhCChhhCCHHHHHHHHHHHHHh
Confidence 7789999999988874 999999531 1 11 1345788999999964 455556666544 89999
Q ss_pred cCCCEEEEecCCcCCCHHHHHHHHHHHHHhcC--CceEEEeecCcccccc-cCEEEEEeCcEEeeecChhHHhc
Q 037346 1068 KKSKVLVLDEATASVDTATDNQIQQTLRQHFS--DCTVVTIAHRITSVLD-SAMVLLLNHGLIKEYDSPTKLLE 1138 (1156)
Q Consensus 1068 r~~~ILiLDEaTS~LD~~te~~I~~~l~~~~~--~~TvI~IaHrl~ti~~-~D~I~Vl~~G~IvE~G~~~eLl~ 1138 (1156)
.+|+||||||||++||+.+.+.+.+.|+++.+ +.|||+|||+++.+.. ||+|++|++|++++.|+++++.+
T Consensus 444 ~~p~lLllDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvi~vsHd~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 517 (520)
T TIGR03269 444 KEPRIVILDEPTGTMDPITKVDVTHSILKAREEMEQTFIIVSHDMDFVLDVCDRAALMRDGKIVKIGDPEEIVE 517 (520)
T ss_pred cCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHcCcEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHHHh
Confidence 99999999999999999999999999988743 7899999999998875 99999999999999999998864
|
The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2. |
| >PLN03130 ABC transporter C family member; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.5e-58 Score=609.44 Aligned_cols=510 Identities=17% Similarity=0.166 Sum_probs=349.1
Q ss_pred cchHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCc-c-cchhhHH------HHHHHHHHHHHHHH
Q 037346 69 LRLAKVLFFSAWQEI--LFIAILALLYTLATYVGPYLIDNFVQYLNGRQA-F-EYEGYVL------CLSERHWFFQVQQF 138 (1156)
Q Consensus 69 ~~l~~~l~~~~~~~~--~~~~~~~~~~~~~~~~~p~ll~~~i~~~~~~~~-~-~~~g~~l------~~~~~~~~~~~~~~ 138 (1156)
.+.++.+++..++.+ .+.+++.++..++....|+.++...+....... . .+.++++ .++.....+...+.
T Consensus 901 ~~vy~~Y~~~~g~~~~~~~~~~~~~~~~~~~~~~~~wl~~w~~~~~~~~~~~~~~~~i~~~l~~~~~i~~~~~~~~~~~~ 980 (1622)
T PLN03130 901 WKVLERYKNALGGAWVVMILFLCYVLTEVFRVSSSTWLSEWTDQGTPKTHGPLFYNLIYALLSFGQVLVTLLNSYWLIMS 980 (1622)
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555555533222 222334444556666778888776664322111 1 1111111 11111112234566
Q ss_pred HHHHHHHHHHHHHHHHhcCCccccCCCCHHHHHHHHHHHHHH---HH-----HHH---HHHHHHH---H----HHHHHHH
Q 037346 139 GIRFRATLFAMIYNKGLTLSGQAKQGNTSGEIINLIAVDAER---AL-----LIL---YKKLGLA---S----IATLLAT 200 (1156)
Q Consensus 139 ~~~~r~~l~~~i~~k~l~l~~~~~~~~~~g~i~nl~s~D~~~---~~-----~ll---~~~lg~~---~----l~~~~~~ 200 (1156)
+.+.-..+...+|+++++.+...++++++|+++|++++|++. .+ .++ ...++.. + +..++++
T Consensus 981 ~~~~~~~L~~~l~~~ll~~p~~ffd~~~~G~IlnR~s~Di~~id~~l~~~~~~~~~~~~~~i~~~i~i~~~~~~~~~~~~ 1060 (1622)
T PLN03130 981 SLYAAKRLHDAMLGSILRAPMSFFHTNPLGRIINRFAKDLGDIDRNVAVFVNMFLGQIFQLLSTFVLIGIVSTISLWAIM 1060 (1622)
T ss_pred HHHHHHHHHHHHHHHHHcCCHHHhccCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 778888889999999999999999999999999999999987 00 000 0000000 0 0000011
Q ss_pred HH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH--HHHH---HHHHHHH-HHHHH-
Q 037346 201 AI---VMLANFPLGRLREKFQDKFMETKDRRIKATSEILRNMRILKLQGWELKKNET--AWLK---KSVYTEA-MISFF- 270 (1156)
Q Consensus 201 ~~---~~~~~~~~~~~~~~~~~~~~~~~d~r~~~~~e~l~~i~~IK~~~~e~r~~e~--~~~~---~~~~~~~-~~~~~- 270 (1156)
++ ++.+..++.+..+..++.....+....+...|.++|+++||.|++|.|-.+. +... +..+... ....+
T Consensus 1061 pl~~~~~~~~~~~~~~~r~~~r~~~~~~s~~~~~~~Etl~Gi~tIraf~~~~~f~~~~~~~~~~~~~~~~~~~~~~~wl~ 1140 (1622)
T PLN03130 1061 PLLVLFYGAYLYYQSTAREVKRLDSITRSPVYAQFGEALNGLSTIRAYKAYDRMAEINGRSMDNNIRFTLVNMSSNRWLA 1140 (1622)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHhCCHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 11 0111111111122222222233344567789999999999999999322111 1111 1111111 00010
Q ss_pred --HHHHHHHHHHHHHHHHHHh-CCCcc-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCC
Q 037346 271 --CWGAPTFVSVVTFGSCILL-GIPLE-----SGMILSALTTFKILQEPIYYLPESISMMIQAKVPLDRIASFLCLEGLQ 342 (1156)
Q Consensus 271 --~~~~~~~~~~~~f~~~~~~-~~~lt-----~~~~ft~l~~~~~l~~pl~~l~~~~~~~~~a~~s~~Ri~~fl~~~~~~ 342 (1156)
......+ .++..+.+.+. ++... ++.+-.++++...+..++..+......+..+.+|.+|+.++++.|++.
T Consensus 1141 ~~l~~~~~~-~i~~~~~~~v~~~~~~~~~~~~~~~~G~~ls~~~~~~~~l~~l~~~~~~~e~~~~sveRi~e~~~~~~E~ 1219 (1622)
T PLN03130 1141 IRLETLGGL-MIWLTASFAVMQNGRAENQAAFASTMGLLLSYALNITSLLTAVLRLASLAENSLNAVERVGTYIDLPSEA 1219 (1622)
T ss_pred HHHHHHHHH-HHHHHHHHHHHcccccccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcc
Confidence 1011111 11111222222 22211 233333444555666777777777888899999999999999876443
Q ss_pred cccc-ccCCC--CCCCccEEEeeeEEEeCCCCCCCccccceEEeeCCeEEEEEcCCCCChHHHHHHHhCCCCCCCcEEEE
Q 037346 343 TDVL-EKMPR--GNSDTAIEIIDGSFSWDFSSPNPTLRNINLKVFHGMRVAVCGTVGSGKSSCLSCILGGVPKESGIIRL 419 (1156)
Q Consensus 343 ~~~~-~~~~~--~~~~~~i~~~~~~f~~~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKSTll~~i~g~~~~~~G~i~~ 419 (1156)
+... ...+. .+..+.|+|+|++|+|+.+ .+++|+|+||+|++||.+||||+||||||||+++|+|+++|++|+|.+
T Consensus 1220 ~~~~~~~~~~~~wp~~g~I~f~nVsf~Y~~~-~~~VL~~is~~I~~GekVaIVGrSGSGKSTLl~lL~rl~~p~~G~I~I 1298 (1622)
T PLN03130 1220 PLVIENNRPPPGWPSSGSIKFEDVVLRYRPE-LPPVLHGLSFEISPSEKVGIVGRTGAGKSSMLNALFRIVELERGRILI 1298 (1622)
T ss_pred cccccCCCCCCCCCCCCcEEEEEEEEEeCCC-CCceecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCcCCCCCceEEE
Confidence 2110 11111 1234679999999999632 347999999999999999999999999999999999999999999999
Q ss_pred cCe-------------EEEEecCCcCCCccHHHHhhcCCCCCHHHHHHHHHHhCCchhhhhCCCCCccccccCCCCCCHH
Q 037346 420 CGT-------------KAYVAQSPWIQSGKIEENILFGKEMDRERYERVLEACSLKKDLEVLPFGDQTIIGERGINLSGG 486 (1156)
Q Consensus 420 ~g~-------------~~~v~Q~~~~~~~ti~eni~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~t~v~~~g~~LSgG 486 (1156)
||. ++||||+|.+|+|||||||.++.+.++++..++++.|++.+++..+|+|++|.||++|.+||||
T Consensus 1299 DG~dI~~i~l~~LR~~IsiVpQdp~LF~GTIreNLd~~~~~tdeei~~Al~~a~l~~~I~~lp~GLdt~Vge~G~nLSgG 1378 (1622)
T PLN03130 1299 DGCDISKFGLMDLRKVLGIIPQAPVLFSGTVRFNLDPFNEHNDADLWESLERAHLKDVIRRNSLGLDAEVSEAGENFSVG 1378 (1622)
T ss_pred CCEecccCCHHHHHhccEEECCCCccccccHHHHhCcCCCCCHHHHHHHHHHcCcHHHHHhCccccCccccCCCCCCCHH
Confidence 993 6999999999999999999999888999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhccCCCeeeeeCCCCCcCHHHHHHHHHHHHh-cCCCEEEEEccCCCccccCCEEEEEeCCeEEEccChHH
Q 037346 487 QKQRIQIARPLYQDADIFLLDDPFSPVDDHTGAHLFKFCWV-SSSKTVIYATHQVEFLPAADLILVIKDGKITQAGKYSD 565 (1156)
Q Consensus 487 qkqRi~lAral~~~~~illlDep~s~lD~~~~~~i~~~~~~-~~~~tvi~vtH~~~~~~~~d~i~~l~~G~i~~~g~~~~ 565 (1156)
||||++|||||+++|+|||||||||+||+++++.|.+.+.. .+++|+|+|+||++++..||+|++|++|+|++.|+|++
T Consensus 1379 QrQrlaLARALLr~p~ILILDEATSaLD~~Te~~Iq~~I~~~~~~~TvI~IAHRL~tI~~~DrIlVLd~G~IvE~Gt~~e 1458 (1622)
T PLN03130 1379 QRQLLSLARALLRRSKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIIDCDRILVLDAGRVVEFDTPEN 1458 (1622)
T ss_pred HHHHHHHHHHHHcCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEEeCChHHHHhCCEEEEEECCEEEEeCCHHH
Confidence 99999999999999999999999999999999988776654 57899999999999999999999999999999999999
Q ss_pred HHhc-CcchHHHHHhh
Q 037346 566 ILNS-GTDFMELVGAH 580 (1156)
Q Consensus 566 l~~~-~~~~~~~~~~~ 580 (1156)
+++. ++.|.++++..
T Consensus 1459 Ll~~~~g~f~~L~~~~ 1474 (1622)
T PLN03130 1459 LLSNEGSAFSKMVQST 1474 (1622)
T ss_pred HHhCCCCHHHHHHHHc
Confidence 9986 57788887543
|
|
| >KOG0056 consensus Heavy metal exporter HMT1, ABC superfamily [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.2e-61 Score=522.73 Aligned_cols=497 Identities=22% Similarity=0.302 Sum_probs=367.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcccchh---h-HHH----------HHHHHHHHHHHHHHHHHHHHHHH
Q 037346 83 ILFIAILALLYTLATYVGPYLIDNFVQYLNGRQAFEYEG---Y-VLC----------LSERHWFFQVQQFGIRFRATLFA 148 (1156)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~p~ll~~~i~~~~~~~~~~~~g---~-~l~----------~~~~~~~~~~~~~~~~~r~~l~~ 148 (1156)
.+...++..+.-++....|.+.+.+++.+..+..+.+.. + ++. +....-.|.+-++.......+-.
T Consensus 217 v~~cl~ll~i~rli~~~~pi~~k~iv~~ltap~~~~~~~~~~~v~L~flqg~gtgsG~~~nlRtfLWi~VqQyttR~ie~ 296 (790)
T KOG0056|consen 217 VVFCLFLLIIGRLINVSLPILSKWIVDELTAPDTFQYSLVFLYVFLKFLQGGGTGSGFLNNLRTFLWIPVQQYTTREIET 296 (790)
T ss_pred HHHHHHHHHHHHHHhhhhHHhHHHHHHhhcCcchhhHHHHHHHHHHHHHhcCCccccchhhhheeEEEEhhHhHHHHHHH
Confidence 344455566666777888999999999887443332211 1 110 11111111112233333445567
Q ss_pred HHHHHHhcCCccccCCCCHHHHHHHHHHHHHH------------------HHHHHHHHHHHHHHHHHHHHHHHH---HHH
Q 037346 149 MIYNKGLTLSGQAKQGNTSGEIINLIAVDAER------------------ALLILYKKLGLASIATLLATAIVM---LAN 207 (1156)
Q Consensus 149 ~i~~k~l~l~~~~~~~~~~g~i~nl~s~D~~~------------------~~~ll~~~lg~~~l~~~~~~~~~~---~~~ 207 (1156)
.+|+|...++...+-++.+|+++..|..-+.. .+.+.|..+-.-...|+++++.+. .+.
T Consensus 297 ~lfrHlh~LSlrwHL~rrtGeVLrvmdrGtssvtll~yvVF~i~PtllDl~va~vYF~~~Fn~wFgLIVfl~m~lY~~~T 376 (790)
T KOG0056|consen 297 ELFRHLHNLSLRWHLNRRTGEVLRVMDRGTSSVTLLEYVVFQIGPTLLDLGVAMVYFFIKFNIWFGLIVFLMMLLYCYVT 376 (790)
T ss_pred HHHHHHHhhceeeeecccccceeehhccCcchhhHHHHHHhhcccHHHHhhhhhhhhhhhHhHHHHHHHHHHHHHHhhee
Confidence 78899988888777778889887766533332 223333333333344444332211 112
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH------HHHHHHHHHHHHHHHHHHHHHHH---HH--HHH
Q 037346 208 FPLGRLREKFQDKFMETKDRRIKATSEILRNMRILKLQGWE------LKKNETAWLKKSVYTEAMISFFC---WG--APT 276 (1156)
Q Consensus 208 ~~~~~~~~~~~~~~~~~~d~r~~~~~e~l~~i~~IK~~~~e------~r~~e~~~~~~~~~~~~~~~~~~---~~--~~~ 276 (1156)
..+.....++++++...-.+.-....+.+-+..+||.|+.| .|+.-+++.+.-....+-..++. .. ...
T Consensus 377 i~iTeWRTk~rR~Mn~~~nesrAr~vDsllNFETVKyy~Ae~yEverYreAil~Yqk~E~ks~~sLnfLN~~Qn~Ii~lg 456 (790)
T KOG0056|consen 377 IKITEWRTKARRKMNNSWNESRARQVDSLLNFETVKYYNAEDYEVERYREAILKYQKQEWKSLASLNFLNIVQNGIIGLG 456 (790)
T ss_pred eeeehhhHHHHHHhhhhhhhhhhhhhhhhhcchhhhccCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhH
Confidence 22233344555555544444445667888999999999988 44444444433222211111111 11 011
Q ss_pred HHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCccccccCCCCCCCc
Q 037346 277 FVSVVTFGSCILLGIPLESGMILSALTTFKILQEPIYYLPESISMMIQAKVPLDRIASFLCLEGLQTDVLEKMPRGNSDT 356 (1156)
Q Consensus 277 ~~~~~~f~~~~~~~~~lt~~~~ft~l~~~~~l~~pl~~l~~~~~~~~~a~~s~~Ri~~fl~~~~~~~~~~~~~~~~~~~~ 356 (1156)
++....+.+|.+..+.+|.|+..-+.+|+..+.+|++.+...+..++...+-++|+.+.+++++...+.....|.....+
T Consensus 457 ll~gsll~aY~Vt~q~ltVGDfVlf~TYliqLy~PLN~FGT~YR~iQ~nfiDmEnmfdllkee~eVvd~P~a~pl~~~~G 536 (790)
T KOG0056|consen 457 LLAGSLLCAYRVTEQTLTVGDFVLFLTYLIQLYMPLNFFGTYYRSIQKNFIDMENMFDLLKEEPEVVDLPGAPPLKVTQG 536 (790)
T ss_pred HhhhhheeeeeeeeccccccceehHHHHHHHHhCchHHHHHHHHHHHHhhhhHHHHHHHhhcCchhhcCCCCCCccccCC
Confidence 22233355666667889999999999999999999999999999999999999999999987654322222233344567
Q ss_pred cEEEeeeEEEeCCCCCCCccccceEEeeCCeEEEEEcCCCCChHHHHHHHhCCCCCCCcEEEEcCe-------------E
Q 037346 357 AIEIIDGSFSWDFSSPNPTLRNINLKVFHGMRVAVCGTVGSGKSSCLSCILGGVPKESGIIRLCGT-------------K 423 (1156)
Q Consensus 357 ~i~~~~~~f~~~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKSTll~~i~g~~~~~~G~i~~~g~-------------~ 423 (1156)
.|+|+|++|+|+ +++++|+||||++++|+.+|+|||||+||||+++++.++++.++|.|.+||+ |
T Consensus 537 ~i~fsnvtF~Y~--p~k~vl~disF~v~pGktvAlVG~SGaGKSTimRlLfRffdv~sGsI~iDgqdIrnvt~~SLRs~I 614 (790)
T KOG0056|consen 537 KIEFSNVTFAYD--PGKPVLSDISFTVQPGKTVALVGPSGAGKSTIMRLLFRFFDVNSGSITIDGQDIRNVTQSSLRSSI 614 (790)
T ss_pred eEEEEEeEEecC--CCCceeecceEEecCCcEEEEECCCCCchhHHHHHHHHHhhccCceEEEcCchHHHHHHHHHHHhc
Confidence 899999999997 5689999999999999999999999999999999999999999999999994 7
Q ss_pred EEEecCCcCCCccHHHHhhcCCC-CCHHHHHHHHHHhCCchhhhhCCCCCccccccCCCCCCHHHHHHHHHHHhhccCCC
Q 037346 424 AYVAQSPWIQSGKIEENILFGKE-MDRERYERVLEACSLKKDLEVLPFGDQTIIGERGINLSGGQKQRIQIARPLYQDAD 502 (1156)
Q Consensus 424 ~~v~Q~~~~~~~ti~eni~~~~~-~~~~~~~~~~~~~~l~~~~~~~~~g~~t~v~~~g~~LSgGqkqRi~lAral~~~~~ 502 (1156)
|.|||+..+||.||..||.++++ ...|.+.++.+++++++.+..+|+|++|.|||+|-.||||+|||||+||+++++|.
T Consensus 615 GVVPQDtvLFNdTI~yNIryak~~AsneevyaAAkAA~IHdrIl~fPegY~t~VGERGLkLSGGEKQRVAiARtiLK~P~ 694 (790)
T KOG0056|consen 615 GVVPQDTVLFNDTILYNIRYAKPSASNEEVYAAAKAAQIHDRILQFPEGYNTRVGERGLKLSGGEKQRVAIARTILKAPS 694 (790)
T ss_pred CcccCcceeecceeeeheeecCCCCChHHHHHHHHHhhHHHHHhcCchhhhhhhhhcccccCCcchhhHHHHHHHhcCCc
Confidence 99999999999999999999986 45677888899999999999999999999999999999999999999999999999
Q ss_pred eeeeeCCCCCcCHHHHHHHHHHHHh-cCCCEEEEEccCCCccccCCEEEEEeCCeEEEccChHHHHhc-CcchHHHHHhh
Q 037346 503 IFLLDDPFSPVDDHTGAHLFKFCWV-SSSKTVIYATHQVEFLPAADLILVIKDGKITQAGKYSDILNS-GTDFMELVGAH 580 (1156)
Q Consensus 503 illlDep~s~lD~~~~~~i~~~~~~-~~~~tvi~vtH~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~-~~~~~~~~~~~ 580 (1156)
|++|||+|||||.++++.|-..+.+ ..++|.|+|.||++++-+||.|+++++|+|+|.|+|+|+..+ ++.|.++.+.+
T Consensus 695 iIlLDEATSALDT~tER~IQaaL~rlca~RTtIVvAHRLSTivnAD~ILvi~~G~IvErG~HeeLl~rdgG~Ya~MWq~q 774 (790)
T KOG0056|consen 695 IILLDEATSALDTNTERAIQAALARLCANRTTIVVAHRLSTIVNADLILVISNGRIVERGRHEELLKRDGGAYADMWQAQ 774 (790)
T ss_pred EEEEcchhhhcCCccHHHHHHHHHHHhcCCceEEEeeeehheecccEEEEEeCCeEeecCcHHHHHhccCCcHHHHHHHH
Confidence 9999999999999999988544433 578999999999999999999999999999999999999987 77899998765
Q ss_pred h
Q 037346 581 K 581 (1156)
Q Consensus 581 ~ 581 (1156)
.
T Consensus 775 q 775 (790)
T KOG0056|consen 775 Q 775 (790)
T ss_pred H
Confidence 4
|
|
| >TIGR02203 MsbA_lipidA lipid A export permease/ATP-binding protein MsbA | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.9e-59 Score=574.14 Aligned_cols=430 Identities=23% Similarity=0.359 Sum_probs=363.1
Q ss_pred HHHHHHHHHHHHHHHHhccccccccccccccchhhhhcccccccchhhhcccchHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 037346 712 AGYKTATQLFNKMHVCIFRAPMYFFDSTPSGRILNRVSENVKWADQSAADMDIPYDIGAFAFSMIQLLGIIVVMSLVAWQ 791 (1156)
Q Consensus 712 ~~~~~~~~l~~~l~~~ll~~p~~ff~~~~~G~il~R~s~d~~~~d~~~~d~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 791 (1156)
.+.++...++..+++++++.|.++|++.+.|++++|++ .|+..++..+...+..++..++.+++.++++++++|+
T Consensus 81 ~~~~~~~~lr~~l~~~~~~~~~~~~~~~~~g~~~~~l~-----~di~~i~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~ 155 (571)
T TIGR02203 81 VSNKVVRDIRVRMFEKLLGLPVSFFDRQPTGTLLSRIT-----FDSEQVASAATDAFIVLVRETLTVIGLFIVLLYYSWQ 155 (571)
T ss_pred HHHHHHHHHHHHHHHHHHcCCHHHhCCCCchHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Confidence 45678888999999999999999999999999999999 7888888878888888888899999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhChHHHHHHhhccchhhhhhcchHHHHHHHHHHHHHHHhhHHHHHHH
Q 037346 792 VLIVFVPVIATFIWYQQYYITSTRELSRLIGVCKAPVIQQFSETISGSTTIRSLDQELRFRDTNMKLIDEYSRPKFHIAG 871 (1156)
Q Consensus 792 l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~e~l~Gi~tIra~~~e~~~~~~~~~~~~~~~~~~~~~~~ 871 (1156)
++++++.++++.+++..++.+..++..+......++..+.+.|.++|+.+||+++.++++.+++.+..+...+.......
T Consensus 156 l~~i~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 235 (571)
T TIGR02203 156 LTLIVVVMLPVLSILMRRVSKRLRRISKEIQNSMGQVTTVAEETLQGYRVVKLFGGQAYETRRFDAVSNRNRRLAMKMTS 235 (571)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHH
Confidence 98888877777777777788878888888888889999999999999999999999999999999999988887777666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-HHcCCCc-----------------------cchHHHHHHHhHHHHHHHHhhcCCC
Q 037346 872 AMEWLRFCIDMLSSITFAFSLAFL-ISVPNGI-----------------------IHPYKNLERKIISVERILQCACIPS 927 (1156)
Q Consensus 872 ~~~~~~~~l~~~~~~~~~~~~~~~-~~~~~~~-----------------------~~~~~~~~~~~~s~~Ri~~~~~~~~ 927 (1156)
...+......++..+...+.+.+. .....+. ......+.....+.+|+.++.+.++
T Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~lt~g~l~a~~~~~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~l~~~~ 315 (571)
T TIGR02203 236 AGSISSPITQLIASLALAVVLFIALFQAQAGSLTAGDFTAFITAMIALIRPLKSLTNVNAPMQRGLAAAESLFTLLDSPP 315 (571)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 666655554444332222111110 0111111 1112567778889999999987665
Q ss_pred CCcccccCCCCCCCCCCCCeEEEEEEEEEEcCCC---------------CceeeCCCCCCHHHHHHHHhhcccCCCceEE
Q 037346 928 EPALVIEATKPNNSRPSHGEVNIRHLQVRYAPNL---------------PLVLRGRTGSGKSTLIQTLFRIVESTAGHIL 992 (1156)
Q Consensus 928 e~~~~~~~~~~~~~~p~~g~I~~~~Vsf~Y~~~~---------------~~vL~G~SGsGKSTL~~lL~rl~~p~~G~I~ 992 (1156)
+.+.. ..+. .+..+.|+|+||+|+|++.. .++|+|+||||||||+++|+|+|+|++|+|+
T Consensus 316 ~~~~~---~~~~--~~~~~~i~~~~v~f~y~~~~~~il~~inl~i~~G~~v~IvG~sGsGKSTLl~lL~gl~~~~~G~I~ 390 (571)
T TIGR02203 316 EKDTG---TRAI--ERARGDVEFRNVTFRYPGRDRPALDSISLVIEPGETVALVGRSGSGKSTLVNLIPRFYEPDSGQIL 390 (571)
T ss_pred CCCCC---CCCC--CCCCCeEEEEEEEEEcCCCCCccccCeeEEecCCCEEEEECCCCCCHHHHHHHHHhccCCCCCeEE
Confidence 53211 1111 12346799999999996532 2456699999999999999999999999999
Q ss_pred EcCeeCCCCChHHHhhcCeeeccccccccccchhccCCCC--CCCHHHHHHHHHHcCCChHHHhhcCCcccc--------
Q 037346 993 IDGKDISLIGLHDLRTRLSIIPQDPTMFEGTTRSNLDPLE--EHADEQIWEALDKCQLGDEVRKKKGKLDSQ-------- 1062 (1156)
Q Consensus 993 idG~di~~i~~~~LR~~i~~VpQdp~LF~gTIr~Nl~~~~--~~~deei~~al~~~~l~~~i~~lp~gl~s~-------- 1062 (1156)
+||+|+++++.+++|++++||||+|++|+|||||||.+++ +.+|++++++++.+++++++.++|+|||+.
T Consensus 391 i~g~~i~~~~~~~~~~~i~~v~Q~~~lf~~Ti~~Ni~~~~~~~~~~~~i~~~l~~~~l~~~i~~lp~gldt~i~~~g~~L 470 (571)
T TIGR02203 391 LDGHDLADYTLASLRRQVALVSQDVVLFNDTIANNIAYGRTEQADRAEIERALAAAYAQDFVDKLPLGLDTPIGENGVLL 470 (571)
T ss_pred ECCEeHHhcCHHHHHhhceEEccCcccccccHHHHHhcCCCCCCCHHHHHHHHHHcChHHHHHhCcCcccceecCCCCcC
Confidence 9999999999999999999999999999999999999875 578999999999999999999999999975
Q ss_pred ----------ccccccCCCEEEEecCCcCCCHHHHHHHHHHHHHhcCCceEEEeecCcccccccCEEEEEeCcEEeeecC
Q 037346 1063 ----------GRVLLKKSKVLVLDEATASVDTATDNQIQQTLRQHFSDCTVVTIAHRITSVLDSAMVLLLNHGLIKEYDS 1132 (1156)
Q Consensus 1063 ----------ARALLr~~~ILiLDEaTS~LD~~te~~I~~~l~~~~~~~TvI~IaHrl~ti~~~D~I~Vl~~G~IvE~G~ 1132 (1156)
|||++++|+|||||||||+||++|++.|.+.|++..+++|+|+||||++.+..||+|++|++|+++|.|+
T Consensus 471 SgGqrQRiaLARall~~~~illLDEpts~LD~~~~~~i~~~L~~~~~~~tiIiitH~~~~~~~~D~ii~l~~g~i~~~g~ 550 (571)
T TIGR02203 471 SGGQRQRLAIARALLKDAPILILDEATSALDNESERLVQAALERLMQGRTTLVIAHRLSTIEKADRIVVMDDGRIVERGT 550 (571)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHhCCCEEEEEehhhHHHHhCCEEEEEeCCEEEeeCC
Confidence 8999999999999999999999999999999999988999999999999999999999999999999999
Q ss_pred hhHHhcCCCChHHHHHHHHh
Q 037346 1133 PTKLLENKSSSFAQLVAEYT 1152 (1156)
Q Consensus 1133 ~~eLl~~~~g~f~~l~~~~~ 1152 (1156)
|++|+++ ++.|+++++++.
T Consensus 551 ~~~l~~~-~~~~~~~~~~~~ 569 (571)
T TIGR02203 551 HNELLAR-NGLYAQLHNMQF 569 (571)
T ss_pred HHHHHHc-CCHHHHHHHHhh
Confidence 9999975 689999988654
|
This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes. |
| >PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-60 Score=575.54 Aligned_cols=425 Identities=20% Similarity=0.278 Sum_probs=324.1
Q ss_pred cEEEeeeEEEeCCCCCCCccccceEEeeCCeEEEEEcCCCCChHHHHHHHhCCCCCCCcEEEEcC--------------e
Q 037346 357 AIEIIDGSFSWDFSSPNPTLRNINLKVFHGMRVAVCGTVGSGKSSCLSCILGGVPKESGIIRLCG--------------T 422 (1156)
Q Consensus 357 ~i~~~~~~f~~~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKSTll~~i~g~~~~~~G~i~~~g--------------~ 422 (1156)
.++++|+++.|+ ++++|+|+||++++|++++|+||||||||||+++|+|+++|++|+|.++| .
T Consensus 4 ~l~~~~l~~~~~---~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~~ 80 (501)
T PRK11288 4 YLSFDGIGKTFP---GVKALDDISFDCRAGQVHALMGENGAGKSTLLKILSGNYQPDAGSILIDGQEMRFASTTAALAAG 80 (501)
T ss_pred eEEEeeeEEEEC---CEEEEeeeeEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEECCCCCHHHHHhCC
Confidence 589999999996 34699999999999999999999999999999999999999999999987 2
Q ss_pred EEEEecCCcCCC-ccHHHHhhcCCC------CC----HHHHHHHHHHhCCchhhhhCCCCCccccccCCCCCCHHHHHHH
Q 037346 423 KAYVAQSPWIQS-GKIEENILFGKE------MD----RERYERVLEACSLKKDLEVLPFGDQTIIGERGINLSGGQKQRI 491 (1156)
Q Consensus 423 ~~~v~Q~~~~~~-~ti~eni~~~~~------~~----~~~~~~~~~~~~l~~~~~~~~~g~~t~v~~~g~~LSgGqkqRi 491 (1156)
++|++|++.++. .|++||+.++.. .+ .++..++++.+++.... .....+||||||||+
T Consensus 81 i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-----------~~~~~~LSgGq~qrv 149 (501)
T PRK11288 81 VAIIYQELHLVPEMTVAENLYLGQLPHKGGIVNRRLLNYEAREQLEHLGVDIDP-----------DTPLKYLSIGQRQMV 149 (501)
T ss_pred EEEEEechhccCCCCHHHHHHhcccccccCCCCHHHHHHHHHHHHHHcCCCCCc-----------CCchhhCCHHHHHHH
Confidence 799999998776 499999998631 12 23445566666664322 244578999999999
Q ss_pred HHHHhhccCCCeeeeeCCCCCcCHHHHHHHHHHHHh--cCCCEEEEEccCCCccc-cCCEEEEEeCCeEEEccChHHHHh
Q 037346 492 QIARPLYQDADIFLLDDPFSPVDDHTGAHLFKFCWV--SSSKTVIYATHQVEFLP-AADLILVIKDGKITQAGKYSDILN 568 (1156)
Q Consensus 492 ~lAral~~~~~illlDep~s~lD~~~~~~i~~~~~~--~~~~tvi~vtH~~~~~~-~~d~i~~l~~G~i~~~g~~~~l~~ 568 (1156)
+|||||+.+|+++||||||++||+.+.+++.+.+.. .+|+|+|++||+++.+. .||+|++|++|+++..++..+...
T Consensus 150 ~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tiiiitHd~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~ 229 (501)
T PRK11288 150 EIAKALARNARVIAFDEPTSSLSAREIEQLFRVIRELRAEGRVILYVSHRMEEIFALCDAITVFKDGRYVATFDDMAQVD 229 (501)
T ss_pred HHHHHHHhCCCEEEEcCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEeecCccccCC
Confidence 999999999999999999999999999999876644 45899999999999886 599999999999975432100000
Q ss_pred cCcchHHHHHhhhhhccCCCCCCCCCcccccccccCCCCCCCcccchhcccccCCCCcccccCccCcchhHHHHhcCccc
Q 037346 569 SGTDFMELVGAHKQALSGLDSIDRGPVSERKSINKENDGTSTTNEIVNKEENKNFQSDDEAALPKGQLVQEEEREKGKVG 648 (1156)
Q Consensus 569 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~g~~~ 648 (1156)
.+.
T Consensus 230 ----------------------------------------------------------------------~~~------- 232 (501)
T PRK11288 230 ----------------------------------------------------------------------RDQ------- 232 (501)
T ss_pred ----------------------------------------------------------------------HHH-------
Confidence 000
Q ss_pred HHHHHHHHHHhccchHHHHHHHHHHHHHHHHhhhhhhhhhccccccccCCCCCchhhHHHHHHHHHHHHHHHHHHHHHHh
Q 037346 649 FSVYWKYMTTAYGGVLVPFILLAQIIFQIFQIGSNYWMAWATPVAKDVNPAVGASTLIIVYVGAGYKTATQLFNKMHVCI 728 (1156)
Q Consensus 649 ~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l 728 (1156)
+ .....+ .
T Consensus 233 ---~---~~~~~~-----------------------------~------------------------------------- 240 (501)
T PRK11288 233 ---L---VQAMVG-----------------------------R------------------------------------- 240 (501)
T ss_pred ---H---HHHhcC-----------------------------C-------------------------------------
Confidence 0 000000 0
Q ss_pred ccccccccccccccchhhhhcccccccchhhhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 037346 729 FRAPMYFFDSTPSGRILNRVSENVKWADQSAADMDIPYDIGAFAFSMIQLLGIIVVMSLVAWQVLIVFVPVIATFIWYQQ 808 (1156)
Q Consensus 729 l~~p~~ff~~~~~G~il~R~s~d~~~~d~~~~d~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~ 808 (1156)
+ . .+..
T Consensus 241 ---~---------------~------~~~~-------------------------------------------------- 246 (501)
T PRK11288 241 ---E---------------I------GDIY-------------------------------------------------- 246 (501)
T ss_pred ---C---------------c------cccc--------------------------------------------------
Confidence 0 0 0000
Q ss_pred HHHHHHHHHHHHHhHhhChHHHHHHhhccchhhhhhcchHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 037346 809 YYITSTRELSRLIGVCKAPVIQQFSETISGSTTIRSLDQELRFRDTNMKLIDEYSRPKFHIAGAMEWLRFCIDMLSSITF 888 (1156)
Q Consensus 809 ~~~~~~~~~~~~~~~~~s~~~~~~~e~l~Gi~tIra~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 888 (1156)
.
T Consensus 247 ----------------~--------------------------------------------------------------- 247 (501)
T PRK11288 247 ----------------G--------------------------------------------------------------- 247 (501)
T ss_pred ----------------c---------------------------------------------------------------
Confidence 0
Q ss_pred HHHHHHHHHcCCCccchHHHHHHHhHHHHHHHHhhcCCCCCcccccCCCCCCCCCCCCeEEEEEEEEEEcCCCCceeeCC
Q 037346 889 AFSLAFLISVPNGIIHPYKNLERKIISVERILQCACIPSEPALVIEATKPNNSRPSHGEVNIRHLQVRYAPNLPLVLRGR 968 (1156)
Q Consensus 889 ~~~~~~~~~~~~~~~~~~~~~~~~~~s~~Ri~~~~~~~~e~~~~~~~~~~~~~~p~~g~I~~~~Vsf~Y~~~~~~vL~G~ 968 (1156)
... .+..+. .....+.. .+ -.++|++|+.++++.++|.|+
T Consensus 248 ---------~~~------------------------~~~~~~-~l~~~~~~-----~~-~~l~~isl~i~~Ge~~~iiG~ 287 (501)
T PRK11288 248 ---------YRP------------------------RPLGEV-RLRLDGLK-----GP-GLREPISFSVRAGEIVGLFGL 287 (501)
T ss_pred ---------ccc------------------------cCCCCc-EEEEeccc-----cC-CcccceeEEEeCCcEEEEEcC
Confidence 000 000000 00000000 01 158999999999999999999
Q ss_pred CCCCHHHHHHHHhhcccCCCceEEEcCeeCCCCC-hHHHhhcCeeeccccc---cc-cccchhccCCCCC----------
Q 037346 969 TGSGKSTLIQTLFRIVESTAGHILIDGKDISLIG-LHDLRTRLSIIPQDPT---MF-EGTTRSNLDPLEE---------- 1033 (1156)
Q Consensus 969 SGsGKSTL~~lL~rl~~p~~G~I~idG~di~~i~-~~~LR~~i~~VpQdp~---LF-~gTIr~Nl~~~~~---------- 1033 (1156)
||||||||+++|+|+++|++|+|.+||.++...+ .+.+|++++|+||+|. +| ..|+.+|+.....
T Consensus 288 NGsGKSTLlk~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~ 367 (501)
T PRK11288 288 VGAGRSELMKLLYGATRRTAGQVYLDGKPIDIRSPRDAIRAGIMLCPEDRKAEGIIPVHSVADNINISARRHHLRAGCLI 367 (501)
T ss_pred CCCCHHHHHHHHcCCCcCCCceEEECCEECCCCCHHHHHhCCCEEcCcCHhhCCCcCCCCHHHHhccccchhhccccccc
Confidence 9999999999999999999999999999987543 3456788999999973 55 4799999864210
Q ss_pred CC---HHHHHHHHHHcCCC-hHHHhhcCCcccc-------ccccccCCCEEEEecCCcCCCHHHHHHHHHHHHHhc-CCc
Q 037346 1034 HA---DEQIWEALDKCQLG-DEVRKKKGKLDSQ-------GRVLLKKSKVLVLDEATASVDTATDNQIQQTLRQHF-SDC 1101 (1156)
Q Consensus 1034 ~~---deei~~al~~~~l~-~~i~~lp~gl~s~-------ARALLr~~~ILiLDEaTS~LD~~te~~I~~~l~~~~-~~~ 1101 (1156)
.. ++++.++++..++. +.....|..|..+ ||||+.+|+||||||||++||..+.+.+.+.|+++. .+.
T Consensus 368 ~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~qrl~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~ 447 (501)
T PRK11288 368 NNRWEAENADRFIRSLNIKTPSREQLIMNLSGGNQQKAILGRWLSEDMKVILLDEPTRGIDVGAKHEIYNVIYELAAQGV 447 (501)
T ss_pred ChHHHHHHHHHHHHhcCcccCCccCccccCCHHHHHHHHHHHHHccCCCEEEEcCCCCCCCHhHHHHHHHHHHHHHhCCC
Confidence 01 24578899999994 5555555555544 899999999999999999999999999999998764 378
Q ss_pred eEEEeecCccccc-ccCEEEEEeCcEEeeecChhHHh
Q 037346 1102 TVVTIAHRITSVL-DSAMVLLLNHGLIKEYDSPTKLL 1137 (1156)
Q Consensus 1102 TvI~IaHrl~ti~-~~D~I~Vl~~G~IvE~G~~~eLl 1137 (1156)
|||+|||+++.+. -||+|++|++|++++.|++++..
T Consensus 448 tviivsHd~~~~~~~~d~i~~l~~g~i~~~~~~~~~~ 484 (501)
T PRK11288 448 AVLFVSSDLPEVLGVADRIVVMREGRIAGELAREQAT 484 (501)
T ss_pred EEEEECCCHHHHHhhCCEEEEEECCEEEEEEccccCC
Confidence 9999999999885 59999999999999999988755
|
|
| >PTZ00243 ABC transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-57 Score=603.55 Aligned_cols=441 Identities=16% Similarity=0.172 Sum_probs=326.6
Q ss_pred HHHHHHHHHHHHHHHHhcCCccccCCCCHHHHHHHHHHHHHH-------HHHHHH----HHHH---HHHHHHHHHHHHHH
Q 037346 139 GIRFRATLFAMIYNKGLTLSGQAKQGNTSGEIINLIAVDAER-------ALLILY----KKLG---LASIATLLATAIVM 204 (1156)
Q Consensus 139 ~~~~r~~l~~~i~~k~l~l~~~~~~~~~~g~i~nl~s~D~~~-------~~~ll~----~~lg---~~~l~~~~~~~~~~ 204 (1156)
+.+....+...+|+++++.+...+++.++|+++|++++|++. .+..+. ..++ +.++....++++++
T Consensus 1026 ~~~~~~~l~~~l~~~ll~~p~~ffd~~~~G~ilnR~s~Di~~id~~l~~~l~~~~~~~~~~i~~li~~~~~~p~~~~~~i 1105 (1560)
T PTZ00243 1026 MRRGSRNMHRDLLRSVSRGTMSFFDTTPLGRILNRFSRDIDILDNTLPMSYLYLLQCLFSICSSILVTSASQPFVLVALV 1105 (1560)
T ss_pred HHHHHHHHHHHHHHHHHcCChhhccCCCccHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344445678899999999999999999999999999999987 000000 0000 00000000001111
Q ss_pred H-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH--HHHHHHH---HHHHHH----HHHHHH
Q 037346 205 L-------ANFPLGRLREKFQDKFMETKDRRIKATSEILRNMRILKLQGWEL--KKNETAW---LKKSVY----TEAMIS 268 (1156)
Q Consensus 205 ~-------~~~~~~~~~~~~~~~~~~~~d~r~~~~~e~l~~i~~IK~~~~e~--r~~e~~~---~~~~~~----~~~~~~ 268 (1156)
+ +...+.+..+..++......+.-.+.++|.++|+++||.|++|. .++-.+. ..+..+ ...+..
T Consensus 1106 ~~~~~~~~i~~~~~~~~r~~~r~~~~~~s~l~s~~~E~l~G~~tIraf~~e~~~~~~~~~~~d~~~~~~~~~~~~~~w~~ 1185 (1560)
T PTZ00243 1106 PCGYLYYRLMQFYNSANREIRRIKSVAKSPVFTLLEEALQGSATITAYGKAHLVMQEALRRLDVVYSCSYLENVANRWLG 1185 (1560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHcCHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1 11112222233333334445555789999999999999999991 1111111 111011 111111
Q ss_pred HHHH--HHHHHHHHHHHHHH--HHhCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCc-
Q 037346 269 FFCW--GAPTFVSVVTFGSC--ILLGIPLESGMILSALTTFKILQEPIYYLPESISMMIQAKVPLDRIASFLCLEGLQT- 343 (1156)
Q Consensus 269 ~~~~--~~~~~~~~~~f~~~--~~~~~~lt~~~~ft~l~~~~~l~~pl~~l~~~~~~~~~a~~s~~Ri~~fl~~~~~~~- 343 (1156)
.... .....+.++.++++ ....+.+++|.+..++.+...+..|+..+...+..+..+..|.+||.++++..+.++
T Consensus 1186 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~l~~a~~l~~~l~~l~~~~~~le~~~~s~eRi~~~~~~~~~e~~ 1265 (1560)
T PTZ00243 1186 VRVEFLSNIVVTVIALIGVIGTMLRATSQEIGLVSLSLTMAMQTTATLNWLVRQVATVEADMNSVERLLYYTDEVPHEDM 1265 (1560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccc
Confidence 1110 01111111222222 222345788988888888888999999999999999999999999999996422110
Q ss_pred cc-----------------------c-ccC-----CCCCCCccEEEeeeEEEeCCCCCCCccccceEEeeCCeEEEEEcC
Q 037346 344 DV-----------------------L-EKM-----PRGNSDTAIEIIDGSFSWDFSSPNPTLRNINLKVFHGMRVAVCGT 394 (1156)
Q Consensus 344 ~~-----------------------~-~~~-----~~~~~~~~i~~~~~~f~~~~~~~~~~l~~i~l~i~~g~~~~ivG~ 394 (1156)
.. . ... +.....+.|+|+||+|+|+.. ..++|+|+||+|++||++||||+
T Consensus 1266 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~I~f~nVsf~Y~~~-~~~vL~~vsf~I~~GekVaIVGr 1344 (1560)
T PTZ00243 1266 PELDEEVDALERRTGMAADVTGTVVIEPASPTSAAPHPVQAGSLVFEGVQMRYREG-LPLVLRGVSFRIAPREKVGIVGR 1344 (1560)
T ss_pred ccccccccccccccccccccccccccccCCCcccCCCCCCCCeEEEEEEEEEeCCC-CCceeecceEEECCCCEEEEECC
Confidence 00 0 000 011123579999999999742 34699999999999999999999
Q ss_pred CCCChHHHHHHHhCCCCCCCcEEEEcCe-------------EEEEecCCcCCCccHHHHhhcCCCCCHHHHHHHHHHhCC
Q 037346 395 VGSGKSSCLSCILGGVPKESGIIRLCGT-------------KAYVAQSPWIQSGKIEENILFGKEMDRERYERVLEACSL 461 (1156)
Q Consensus 395 ~GsGKSTll~~i~g~~~~~~G~i~~~g~-------------~~~v~Q~~~~~~~ti~eni~~~~~~~~~~~~~~~~~~~l 461 (1156)
+|||||||+++|+|+++|++|+|.+||. ++||||+|.+|++||||||..+.++++++++++++.|++
T Consensus 1345 TGSGKSTLl~lLlrl~~p~~G~I~IDG~di~~i~l~~LR~~I~iVpQdp~LF~gTIreNIdp~~~~sdeeI~~Al~~a~l 1424 (1560)
T PTZ00243 1345 TGSGKSTLLLTFMRMVEVCGGEIRVNGREIGAYGLRELRRQFSMIPQDPVLFDGTVRQNVDPFLEASSAEVWAALELVGL 1424 (1560)
T ss_pred CCCCHHHHHHHHhCCCCCCCcEEEECCEEcccCCHHHHHhcceEECCCCccccccHHHHhCcccCCCHHHHHHHHHHCCC
Confidence 9999999999999999999999999993 699999999999999999998778889999999999999
Q ss_pred chhhhhCCCCCccccccCCCCCCHHHHHHHHHHHhhccC-CCeeeeeCCCCCcCHHHHHHHHHHHHh-cCCCEEEEEccC
Q 037346 462 KKDLEVLPFGDQTIIGERGINLSGGQKQRIQIARPLYQD-ADIFLLDDPFSPVDDHTGAHLFKFCWV-SSSKTVIYATHQ 539 (1156)
Q Consensus 462 ~~~~~~~~~g~~t~v~~~g~~LSgGqkqRi~lAral~~~-~~illlDep~s~lD~~~~~~i~~~~~~-~~~~tvi~vtH~ 539 (1156)
.+++..+|+|++|.||++|.+||||||||++|||||+++ |+|||||||||+||+++++.|.+.+.. .+++|+|+|+||
T Consensus 1425 ~~~I~~lp~Gldt~vge~G~nLSgGQrQrLaLARALL~~~~~ILlLDEATSaLD~~te~~Iq~~L~~~~~~~TvI~IAHR 1504 (1560)
T PTZ00243 1425 RERVASESEGIDSRVLEGGSNYSVGQRQLMCMARALLKKGSGFILMDEATANIDPALDRQIQATVMSAFSAYTVITIAHR 1504 (1560)
T ss_pred hHHHhhCcccccccccCCcCcCCHHHHHHHHHHHHHhcCCCCEEEEeCCCccCCHHHHHHHHHHHHHHCCCCEEEEEecc
Confidence 999999999999999999999999999999999999995 899999999999999999998776654 578999999999
Q ss_pred CCccccCCEEEEEeCCeEEEccChHHHHhc-CcchHHHHHhh
Q 037346 540 VEFLPAADLILVIKDGKITQAGKYSDILNS-GTDFMELVGAH 580 (1156)
Q Consensus 540 ~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~-~~~~~~~~~~~ 580 (1156)
++.+..||+|++|++|+|++.|+|++++++ ++.|.+++...
T Consensus 1505 l~ti~~~DrIlVLd~G~VvE~Gt~~eLl~~~~~~f~~l~~~~ 1546 (1560)
T PTZ00243 1505 LHTVAQYDKIIVMDHGAVAEMGSPRELVMNRQSIFHSMVEAL 1546 (1560)
T ss_pred HHHHHhCCEEEEEECCEEEEECCHHHHHhCCCCHHHHHHHHh
Confidence 999999999999999999999999999974 67788887543
|
|
| >PRK15064 ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.6e-59 Score=567.62 Aligned_cols=450 Identities=18% Similarity=0.294 Sum_probs=315.8
Q ss_pred EEEeeeEEEeCCCCCCCccccceEEeeCCeEEEEEcCCCCChHHHHHHHhCCCCCCCcEEEEcC--eEEEEecCCcCCC-
Q 037346 358 IEIIDGSFSWDFSSPNPTLRNINLKVFHGMRVAVCGTVGSGKSSCLSCILGGVPKESGIIRLCG--TKAYVAQSPWIQS- 434 (1156)
Q Consensus 358 i~~~~~~f~~~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKSTll~~i~g~~~~~~G~i~~~g--~~~~v~Q~~~~~~- 434 (1156)
|+++|++++|+ ++++|+|+||+|++|++++|+||||||||||+++|+|+++|++|+|.++| .++|++|++.++.
T Consensus 2 l~i~~ls~~~~---~~~il~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~Gl~~p~~G~i~~~~~~~i~~~~q~~~~~~~ 78 (530)
T PRK15064 2 LSTANITMQFG---AKPLFENISVKFGGGNRYGLIGANGCGKSTFMKILGGDLEPSAGNVSLDPNERLGKLRQDQFAFEE 78 (530)
T ss_pred EEEEEEEEEeC---CcEeEeCCEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEecCCCEEEEEeccCCcCCC
Confidence 78999999996 35799999999999999999999999999999999999999999999986 6899999987765
Q ss_pred ccHHHHhhcCCCC---------------------------------------CHHHHHHHHHHhCCchhhhhCCCCCccc
Q 037346 435 GKIEENILFGKEM---------------------------------------DRERYERVLEACSLKKDLEVLPFGDQTI 475 (1156)
Q Consensus 435 ~ti~eni~~~~~~---------------------------------------~~~~~~~~~~~~~l~~~~~~~~~g~~t~ 475 (1156)
.|++||+.++... .+++..++++.+++.+...
T Consensus 79 ~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~--------- 149 (530)
T PRK15064 79 FTVLDTVIMGHTELWEVKQERDRIYALPEMSEEDGMKVADLEVKFAEMDGYTAEARAGELLLGVGIPEEQH--------- 149 (530)
T ss_pred CcHHHHHHHhhHHHHHHHHHHHHHhcccccccchHHHHHHHHHHHHhcCchhHHHHHHHHHHhCCCChhHh---------
Confidence 5999999875310 0122333444444432111
Q ss_pred cccCCCCCCHHHHHHHHHHHhhccCCCeeeeeCCCCCcCHHHHHHHHHHHHhcCCCEEEEEccCCCccc-cCCEEEEEeC
Q 037346 476 IGERGINLSGGQKQRIQIARPLYQDADIFLLDDPFSPVDDHTGAHLFKFCWVSSSKTVIYATHQVEFLP-AADLILVIKD 554 (1156)
Q Consensus 476 v~~~g~~LSgGqkqRi~lAral~~~~~illlDep~s~lD~~~~~~i~~~~~~~~~~tvi~vtH~~~~~~-~~d~i~~l~~ 554 (1156)
.....+||||||||++|||||+.+|+++||||||++||+.+..++.+.+. ..+.|||+|||+++.+. .||+|++|++
T Consensus 150 -~~~~~~LSgGq~qrv~lA~aL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~-~~~~tiiivsHd~~~~~~~~d~i~~l~~ 227 (530)
T PRK15064 150 -YGLMSEVAPGWKLRVLLAQALFSNPDILLLDEPTNNLDINTIRWLEDVLN-ERNSTMIIISHDRHFLNSVCTHMADLDY 227 (530)
T ss_pred -cCchhhcCHHHHHHHHHHHHHhcCCCEEEEcCCCcccCHHHHHHHHHHHH-hCCCeEEEEeCCHHHHHhhcceEEEEeC
Confidence 23457899999999999999999999999999999999999999877653 45789999999999986 5999999999
Q ss_pred CeE-EEccChHHHHhcCcchH-HHHHhhhhhccCCCCCCCCCcccccccccCCCCCCCcccchhcccccCCCCcccccCc
Q 037346 555 GKI-TQAGKYSDILNSGTDFM-ELVGAHKQALSGLDSIDRGPVSERKSINKENDGTSTTNEIVNKEENKNFQSDDEAALP 632 (1156)
Q Consensus 555 G~i-~~~g~~~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 632 (1156)
|++ ++.|+++++++...... .......
T Consensus 228 g~i~~~~g~~~~~~~~~~~~~~~~~~~~~--------------------------------------------------- 256 (530)
T PRK15064 228 GELRVYPGNYDEYMTAATQARERLLADNA--------------------------------------------------- 256 (530)
T ss_pred CEEEEecCCHHHHHHHHHHHHHHHHHHHH---------------------------------------------------
Confidence 999 47899887753211000 0000000
Q ss_pred cCcchhHHHHhcCcccHHHHHHHHHHhccchHHHHHHHHHHHHHHHHhhhhhhhhhccccccccCCCCCchhhHHHHHHH
Q 037346 633 KGQLVQEEEREKGKVGFSVYWKYMTTAYGGVLVPFILLAQIIFQIFQIGSNYWMAWATPVAKDVNPAVGASTLIIVYVGA 712 (1156)
Q Consensus 633 ~~~~~~~e~~~~g~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 712 (1156)
..+.+.+. ...++.
T Consensus 257 ---~~~~~~~~--------~~~~~~------------------------------------------------------- 270 (530)
T PRK15064 257 ---KKKAQIAE--------LQSFVS------------------------------------------------------- 270 (530)
T ss_pred ---HHHHHHHH--------HHHHHH-------------------------------------------------------
Confidence 00000000 000000
Q ss_pred HHHHHHHHHHHHHHHhccccccccccccccchhhhhcccccccchhhhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 037346 713 GYKTATQLFNKMHVCIFRAPMYFFDSTPSGRILNRVSENVKWADQSAADMDIPYDIGAFAFSMIQLLGIIVVMSLVAWQV 792 (1156)
Q Consensus 713 ~~~~~~~l~~~l~~~ll~~p~~ff~~~~~G~il~R~s~d~~~~d~~~~d~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l 792 (1156)
|... .. ..
T Consensus 271 ----------------------------------~~~~----~~-~~--------------------------------- 278 (530)
T PRK15064 271 ----------------------------------RFSA----NA-SK--------------------------------- 278 (530)
T ss_pred ----------------------------------Hhhc----cc-hh---------------------------------
Confidence 0000 00 00
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhChHHHHHHhhccchhhhhhcchHHHHHHHHHHHHHHHhhHHHHHHHH
Q 037346 793 LIVFVPVIATFIWYQQYYITSTRELSRLIGVCKAPVIQQFSETISGSTTIRSLDQELRFRDTNMKLIDEYSRPKFHIAGA 872 (1156)
Q Consensus 793 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~e~l~Gi~tIra~~~e~~~~~~~~~~~~~~~~~~~~~~~~ 872 (1156)
........++.
T Consensus 279 -----------------~~~~~~~~~~~---------------------------------------------------- 289 (530)
T PRK15064 279 -----------------AKQATSRAKQI---------------------------------------------------- 289 (530)
T ss_pred -----------------hHHHHHHHHHH----------------------------------------------------
Confidence 00000000000
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCCCccchHHHHHHHhHHHHHHHHhhcCCC--CCcccccCCCCCCCCCCCCeEEE
Q 037346 873 MEWLRFCIDMLSSITFAFSLAFLISVPNGIIHPYKNLERKIISVERILQCACIPS--EPALVIEATKPNNSRPSHGEVNI 950 (1156)
Q Consensus 873 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~Ri~~~~~~~~--e~~~~~~~~~~~~~~p~~g~I~~ 950 (1156)
++... ...+. +........ ...-+.+..+++
T Consensus 290 --------------------------------------------~~~~~-~~~~~~~~~~~~~~~~--~~~~~~~~~l~~ 322 (530)
T PRK15064 290 --------------------------------------------DKIKL-EEVKPSSRQNPFIRFE--QDKKLHRNALEV 322 (530)
T ss_pred --------------------------------------------hhccc-cccCCccccCceeeCC--CCCCCCCceEEE
Confidence 00000 00000 000000000 000001123555
Q ss_pred EEEEEEE-------------cCCCCceeeCCCCCCHHHHHHHHhhcccCCCceEEEcCeeCCCCChHHHhhcCeeecccc
Q 037346 951 RHLQVRY-------------APNLPLVLRGRTGSGKSTLIQTLFRIVESTAGHILIDGKDISLIGLHDLRTRLSIIPQDP 1017 (1156)
Q Consensus 951 ~~Vsf~Y-------------~~~~~~vL~G~SGsGKSTL~~lL~rl~~p~~G~I~idG~di~~i~~~~LR~~i~~VpQdp 1017 (1156)
+||+++| .+++.++|.|+||||||||+++|+|+++|++|+|.++| +++++||||++
T Consensus 323 ~~l~~~~~~~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~p~~G~i~~~~-----------~~~i~~~~q~~ 391 (530)
T PRK15064 323 ENLTKGFDNGPLFKNLNLLLEAGERLAIIGENGVGKTTLLRTLVGELEPDSGTVKWSE-----------NANIGYYAQDH 391 (530)
T ss_pred EeeEEeeCCceeecCcEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECC-----------ceEEEEEcccc
Confidence 5555555 45566678899999999999999999999999999998 35799999998
Q ss_pred c--ccc-ccchhccCCCC--CCCHHHHHHHHHHcCCC-hHHHhhcCCcccc-------ccccccCCCEEEEecCCcCCCH
Q 037346 1018 T--MFE-GTTRSNLDPLE--EHADEQIWEALDKCQLG-DEVRKKKGKLDSQ-------GRVLLKKSKVLVLDEATASVDT 1084 (1156)
Q Consensus 1018 ~--LF~-gTIr~Nl~~~~--~~~deei~~al~~~~l~-~~i~~lp~gl~s~-------ARALLr~~~ILiLDEaTS~LD~ 1084 (1156)
. ++. .|+++|+.... ...++++.++++..++. +.....+..|..+ |||++++|+||||||||++||+
T Consensus 392 ~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~qrv~la~al~~~p~lllLDEPt~~LD~ 471 (530)
T PRK15064 392 AYDFENDLTLFDWMSQWRQEGDDEQAVRGTLGRLLFSQDDIKKSVKVLSGGEKGRMLFGKLMMQKPNVLVMDEPTNHMDM 471 (530)
T ss_pred cccCCCCCcHHHHHHHhccCCccHHHHHHHHHHcCCChhHhcCcccccCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCH
Confidence 4 443 59999986432 22356788999999995 5666666666544 8999999999999999999999
Q ss_pred HHHHHHHHHHHHhcCCceEEEeecCcccccc-cCEEEEEeCcEEe-eecChhHHhcC
Q 037346 1085 ATDNQIQQTLRQHFSDCTVVTIAHRITSVLD-SAMVLLLNHGLIK-EYDSPTKLLEN 1139 (1156)
Q Consensus 1085 ~te~~I~~~l~~~~~~~TvI~IaHrl~ti~~-~D~I~Vl~~G~Iv-E~G~~~eLl~~ 1139 (1156)
.+...+.+.|++. +.|||+|||+++.+.. ||+|++|++|+++ ..|+++++++.
T Consensus 472 ~~~~~l~~~l~~~--~~tvi~vsHd~~~~~~~~d~i~~l~~g~i~~~~g~~~~~~~~ 526 (530)
T PRK15064 472 ESIESLNMALEKY--EGTLIFVSHDREFVSSLATRIIEITPDGVVDFSGTYEEYLRS 526 (530)
T ss_pred HHHHHHHHHHHHC--CCEEEEEeCCHHHHHHhCCEEEEEECCeEEEcCCCHHHHHHH
Confidence 9999999999886 5699999999998875 9999999999998 78999998854
|
|
| >PRK13657 cyclic beta-1,2-glucan ABC transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.1e-58 Score=567.66 Aligned_cols=426 Identities=20% Similarity=0.293 Sum_probs=337.4
Q ss_pred HHHHHHHHHHhccccccccccccccchhhhhcccccccchhhhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 037346 718 TQLFNKMHVCIFRAPMYFFDSTPSGRILNRVSENVKWADQSAADMDIPYDIGAFAFSMIQLLGIIVVMSLVAWQVLIVFV 797 (1156)
Q Consensus 718 ~~l~~~l~~~ll~~p~~ff~~~~~G~il~R~s~d~~~~d~~~~d~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~ 797 (1156)
..++.++++++++.|..+|++.+.|++++|++ .|+..+.......+..++..++..++.+++++..+|+++++++
T Consensus 89 ~~l~~~l~~~l~~~~~~~~~~~~~g~~~~~~~-----~di~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~l 163 (588)
T PRK13657 89 LAVLTEYFERIIQLPLAWHSQRGSGRALHTLL-----RGTDALFGLWLEFMREHLATLVALVVLLPLALFMNWRLSLVLV 163 (588)
T ss_pred HHHHHHHHHHHHhCCHHHHCcCChHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455899999999999999999999999999 6666555544455555666666667777778888998888777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHhhChHHHHHHhhccchhhhhhcchHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Q 037346 798 PVIATFIWYQQYYITSTRELSRLIGVCKAPVIQQFSETISGSTTIRSLDQELRFRDTNMKLIDEYSRPKFHIAGAMEWLR 877 (1156)
Q Consensus 798 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~e~l~Gi~tIra~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 877 (1156)
.+++++..+..++.+..++..+......+...+.+.|.++|+++||+|+.++.+.+++.+..++..+..........+..
T Consensus 164 ~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 243 (588)
T PRK13657 164 VLGIVYTLITTLVMRKTKDGQAAVEEHYHDLFAHVSDAIGNVSVVQSYNRIEAETQALRDIADNLLAAQMPVLSWWALAS 243 (588)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77676667777777777777777778888999999999999999999999999999999888887776655544444433
Q ss_pred HHHHHHHHHHHHHHHHH-HHHcCCCc-----------------------cchHHHHHHHhHHHHHHHHhhcCCCCCcccc
Q 037346 878 FCIDMLSSITFAFSLAF-LISVPNGI-----------------------IHPYKNLERKIISVERILQCACIPSEPALVI 933 (1156)
Q Consensus 878 ~~l~~~~~~~~~~~~~~-~~~~~~~~-----------------------~~~~~~~~~~~~s~~Ri~~~~~~~~e~~~~~ 933 (1156)
...+++..+...++..+ ......+. ......+.....+.+|+.++.+.+++.+..
T Consensus 244 ~~~~~~~~~~~~~~~~~g~~~v~~g~lt~g~~~a~~~l~~~~~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~- 322 (588)
T PRK13657 244 VLNRAASTITMLAILVLGAALVQKGQLRVGEVVAFVGFATLLIGRLDQVVAFINQVFMAAPKLEEFFEVEDAVPDVRDP- 322 (588)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccCCC-
Confidence 33322221111111110 00001111 111244555667788888877654432110
Q ss_pred cCCCCCCCCCCCCeEEEEEEEEEEcCC--------------CCceeeCCCCCCHHHHHHHHhhcccCCCceEEEcCeeCC
Q 037346 934 EATKPNNSRPSHGEVNIRHLQVRYAPN--------------LPLVLRGRTGSGKSTLIQTLFRIVESTAGHILIDGKDIS 999 (1156)
Q Consensus 934 ~~~~~~~~~p~~g~I~~~~Vsf~Y~~~--------------~~~vL~G~SGsGKSTL~~lL~rl~~p~~G~I~idG~di~ 999 (1156)
..... ..+..+.|+|+||+|+|+++ +.++++|+||||||||+++|+|+|+|++|+|++||.|++
T Consensus 323 -~~~~~-~~~~~~~I~~~~vsf~y~~~~~iL~~inl~i~~G~~v~IvG~sGsGKSTLl~lL~gl~~p~~G~I~i~g~~i~ 400 (588)
T PRK13657 323 -PGAID-LGRVKGAVEFDDVSFSYDNSRQGVEDVSFEAKPGQTVAIVGPTGAGKSTLINLLQRVFDPQSGRILIDGTDIR 400 (588)
T ss_pred -CCCCC-cCCCCCeEEEEEEEEEeCCCCceecceeEEECCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCEEhh
Confidence 01000 01234679999999999632 234566999999999999999999999999999999999
Q ss_pred CCChHHHhhcCeeeccccccccccchhccCCCC-CCCHHHHHHHHHHcCCChHHHhhcCCcccc----------------
Q 037346 1000 LIGLHDLRTRLSIIPQDPTMFEGTTRSNLDPLE-EHADEQIWEALDKCQLGDEVRKKKGKLDSQ---------------- 1062 (1156)
Q Consensus 1000 ~i~~~~LR~~i~~VpQdp~LF~gTIr~Nl~~~~-~~~deei~~al~~~~l~~~i~~lp~gl~s~---------------- 1062 (1156)
+++.+++|++|+||||||.+|+|||||||.+++ +.+|+++++|++.+++++++.++|+|+||.
T Consensus 401 ~~~~~~~r~~i~~v~Q~~~lf~~Ti~~Ni~~~~~~~~d~~i~~al~~~~l~~~i~~lp~gldt~i~~~g~~LSgGq~QRi 480 (588)
T PRK13657 401 TVTRASLRRNIAVVFQDAGLFNRSIEDNIRVGRPDATDEEMRAAAERAQAHDFIERKPDGYDTVVGERGRQLSGGERQRL 480 (588)
T ss_pred hCCHHHHHhheEEEecCcccccccHHHHHhcCCCCCCHHHHHHHHHHhCHHHHHHhCcccccchhcCCCCCCCHHHHHHH
Confidence 999999999999999999999999999999875 467999999999999999999999999975
Q ss_pred --ccccccCCCEEEEecCCcCCCHHHHHHHHHHHHHhcCCceEEEeecCcccccccCEEEEEeCcEEeeecChhHHhcCC
Q 037346 1063 --GRVLLKKSKVLVLDEATASVDTATDNQIQQTLRQHFSDCTVVTIAHRITSVLDSAMVLLLNHGLIKEYDSPTKLLENK 1140 (1156)
Q Consensus 1063 --ARALLr~~~ILiLDEaTS~LD~~te~~I~~~l~~~~~~~TvI~IaHrl~ti~~~D~I~Vl~~G~IvE~G~~~eLl~~~ 1140 (1156)
||||+++|+|||||||||+||++|++.|.+.|++..+++|+|+||||+++++.||+|++|++|+++|.|+|++|+++
T Consensus 481 alARall~~~~iliLDEpts~LD~~t~~~i~~~l~~~~~~~tvIiitHr~~~~~~~D~ii~l~~G~i~~~g~~~~l~~~- 559 (588)
T PRK13657 481 AIARALLKDPPILILDEATSALDVETEAKVKAALDELMKGRTTFIIAHRLSTVRNADRILVFDNGRVVESGSFDELVAR- 559 (588)
T ss_pred HHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHhcCCEEEEEEecHHHHHhCCEEEEEECCEEEEeCCHHHHHHC-
Confidence 89999999999999999999999999999999998889999999999999999999999999999999999999975
Q ss_pred CChHHHHHHHHh
Q 037346 1141 SSSFAQLVAEYT 1152 (1156)
Q Consensus 1141 ~g~f~~l~~~~~ 1152 (1156)
++.|++|++++.
T Consensus 560 ~~~y~~l~~~~~ 571 (588)
T PRK13657 560 GGRFAALLRAQG 571 (588)
T ss_pred CChHHHHHHHhh
Confidence 799999998654
|
|
| >TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-59 Score=571.65 Aligned_cols=429 Identities=23% Similarity=0.350 Sum_probs=321.2
Q ss_pred EEEeeeEEEeCCCCCCCccccceEEeeCCeEEEEEcCCCCChHHHHHHHhCCCCC--CCcEEEEcC--------------
Q 037346 358 IEIIDGSFSWDFSSPNPTLRNINLKVFHGMRVAVCGTVGSGKSSCLSCILGGVPK--ESGIIRLCG-------------- 421 (1156)
Q Consensus 358 i~~~~~~f~~~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKSTll~~i~g~~~~--~~G~i~~~g-------------- 421 (1156)
++++|++++|+ ++++|+|+||++++|++++|+||||||||||+++|+|+++| ++|+|.++|
T Consensus 2 l~i~~l~~~~~---~~~il~~isl~i~~Ge~~~liG~nGsGKSTLl~~i~G~~~~~~~~G~i~~~g~~~~~~~~~~~~~~ 78 (500)
T TIGR02633 2 LEMKGIVKTFG---GVKALDGIDLEVRPGECVGLCGENGAGKSTLMKILSGVYPHGTWDGEIYWSGSPLKASNIRDTERA 78 (500)
T ss_pred EEEEeEEEEeC---CeEeecceEEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEECCCCCHHHHHhC
Confidence 78999999996 35799999999999999999999999999999999999987 799999987
Q ss_pred eEEEEecCCcCCC-ccHHHHhhcCCC-------CCH----HHHHHHHHHhCCchhhhhCCCCCccccccCCCCCCHHHHH
Q 037346 422 TKAYVAQSPWIQS-GKIEENILFGKE-------MDR----ERYERVLEACSLKKDLEVLPFGDQTIIGERGINLSGGQKQ 489 (1156)
Q Consensus 422 ~~~~v~Q~~~~~~-~ti~eni~~~~~-------~~~----~~~~~~~~~~~l~~~~~~~~~g~~t~v~~~g~~LSgGqkq 489 (1156)
.++|++|+|.++. .|++||+.++.. .+. ++.+++++.+++.+... .....+|||||||
T Consensus 79 ~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~----------~~~~~~LSgG~~q 148 (500)
T TIGR02633 79 GIVIIHQELTLVPELSVAENIFLGNEITLPGGRMAYNAMYLRAKNLLRELQLDADNV----------TRPVGDYGGGQQQ 148 (500)
T ss_pred CEEEEeeccccCCCCcHHHHHHhhccccccccccCHHHHHHHHHHHHHHcCCCCCcc----------cCchhhCCHHHHH
Confidence 2799999997765 599999988642 111 23445566665543211 1235689999999
Q ss_pred HHHHHHhhccCCCeeeeeCCCCCcCHHHHHHHHHHHHh--cCCCEEEEEccCCCccc-cCCEEEEEeCCeEEEccChHHH
Q 037346 490 RIQIARPLYQDADIFLLDDPFSPVDDHTGAHLFKFCWV--SSSKTVIYATHQVEFLP-AADLILVIKDGKITQAGKYSDI 566 (1156)
Q Consensus 490 Ri~lAral~~~~~illlDep~s~lD~~~~~~i~~~~~~--~~~~tvi~vtH~~~~~~-~~d~i~~l~~G~i~~~g~~~~l 566 (1156)
|++|||||+.+|+++||||||++||+.+.+++.+.+.. .+|+|+|++||+++.+. .||+|++|++|+++..|+.+++
T Consensus 149 rv~iA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tviiitHd~~~~~~~~d~i~~l~~G~i~~~~~~~~~ 228 (500)
T TIGR02633 149 LVEIAKALNKQARLLILDEPSSSLTEKETEILLDIIRDLKAHGVACVYISHKLNEVKAVCDTICVIRDGQHVATKDMSTM 228 (500)
T ss_pred HHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCcHHHHHHhCCEEEEEeCCeEeeecCcccC
Confidence 99999999999999999999999999999999876543 45889999999999986 5999999999999876543221
Q ss_pred HhcCcchHHHHHhhhhhccCCCCCCCCCcccccccccCCCCCCCcccchhcccccCCCCcccccCccCcchhHHHHhcCc
Q 037346 567 LNSGTDFMELVGAHKQALSGLDSIDRGPVSERKSINKENDGTSTTNEIVNKEENKNFQSDDEAALPKGQLVQEEEREKGK 646 (1156)
Q Consensus 567 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~g~ 646 (1156)
... .....
T Consensus 229 ~~~-----~~~~~------------------------------------------------------------------- 236 (500)
T TIGR02633 229 SED-----DIITM------------------------------------------------------------------- 236 (500)
T ss_pred CHH-----HHHHH-------------------------------------------------------------------
Confidence 000 00000
Q ss_pred ccHHHHHHHHHHhccchHHHHHHHHHHHHHHHHhhhhhhhhhccccccccCCCCCchhhHHHHHHHHHHHHHHHHHHHHH
Q 037346 647 VGFSVYWKYMTTAYGGVLVPFILLAQIIFQIFQIGSNYWMAWATPVAKDVNPAVGASTLIIVYVGAGYKTATQLFNKMHV 726 (1156)
Q Consensus 647 ~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~ 726 (1156)
+. +. .. ..
T Consensus 237 --------~~----~~----------------------------~~-----~~--------------------------- 244 (500)
T TIGR02633 237 --------MV----GR----------------------------EI-----TS--------------------------- 244 (500)
T ss_pred --------Hh----Cc----------------------------cc-----cc---------------------------
Confidence 00 00 00 00
Q ss_pred HhccccccccccccccchhhhhcccccccchhhhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 037346 727 CIFRAPMYFFDSTPSGRILNRVSENVKWADQSAADMDIPYDIGAFAFSMIQLLGIIVVMSLVAWQVLIVFVPVIATFIWY 806 (1156)
Q Consensus 727 ~ll~~p~~ff~~~~~G~il~R~s~d~~~~d~~~~d~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~ 806 (1156)
. .|. ...+.++
T Consensus 245 -~--~~~---~~~~~~~--------------------------------------------------------------- 255 (500)
T TIGR02633 245 -L--YPH---EPHEIGD--------------------------------------------------------------- 255 (500)
T ss_pred -c--ccc---cccCCCC---------------------------------------------------------------
Confidence 0 000 0000000
Q ss_pred HHHHHHHHHHHHHHHhHhhChHHHHHHhhccchhhhhhcchHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Q 037346 807 QQYYITSTRELSRLIGVCKAPVIQQFSETISGSTTIRSLDQELRFRDTNMKLIDEYSRPKFHIAGAMEWLRFCIDMLSSI 886 (1156)
Q Consensus 807 ~~~~~~~~~~~~~~~~~~~s~~~~~~~e~l~Gi~tIra~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 886 (1156)
T Consensus 256 -------------------------------------------------------------------------------- 255 (500)
T TIGR02633 256 -------------------------------------------------------------------------------- 255 (500)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHHHHcCCCccchHHHHHHHhHHHHHHHHhhcCCCCCcccccCCCCCCCCCC-CCeEEEEEEEEEEcCCCCcee
Q 037346 887 TFAFSLAFLISVPNGIIHPYKNLERKIISVERILQCACIPSEPALVIEATKPNNSRPS-HGEVNIRHLQVRYAPNLPLVL 965 (1156)
Q Consensus 887 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~Ri~~~~~~~~e~~~~~~~~~~~~~~p~-~g~I~~~~Vsf~Y~~~~~~vL 965 (1156)
+.. +.......++. .+...++|++|...+++.++|
T Consensus 256 ------------------------------------------~~l--~~~~l~~~~~~~~~~~~l~~is~~i~~Ge~~~l 291 (500)
T TIGR02633 256 ------------------------------------------VIL--EARNLTCWDVINPHRKRVDDVSFSLRRGEILGV 291 (500)
T ss_pred ------------------------------------------ceE--EEeCCcccccccccccccccceeEEeCCcEEEE
Confidence 000 00000000100 112368999999999999999
Q ss_pred eCCCCCCHHHHHHHHhhcccC-CCceEEEcCeeCCCCCh-HHHhhcCeeecccc---cccc-ccchhccCCCC-------
Q 037346 966 RGRTGSGKSTLIQTLFRIVES-TAGHILIDGKDISLIGL-HDLRTRLSIIPQDP---TMFE-GTTRSNLDPLE------- 1032 (1156)
Q Consensus 966 ~G~SGsGKSTL~~lL~rl~~p-~~G~I~idG~di~~i~~-~~LR~~i~~VpQdp---~LF~-gTIr~Nl~~~~------- 1032 (1156)
.|+||||||||+++|+|+++| ++|+|.++|.++...+. ..+|+++++|||++ .+|. -|+++|+.+..
T Consensus 292 ~G~NGsGKSTLl~~l~G~~~p~~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~l~~~~tv~~~~~~~~~~~~~~~ 371 (500)
T TIGR02633 292 AGLVGAGRTELVQALFGAYPGKFEGNVFINGKPVDIRNPAQAIRAGIAMVPEDRKRHGIVPILGVGKNITLSVLKSFCFK 371 (500)
T ss_pred eCCCCCCHHHHHHHHhCCCCCCCCeEEEECCEECCCCCHHHHHhCCCEEcCcchhhCCcCCCCCHHHHhcchhhhhhccC
Confidence 999999999999999999995 89999999999875443 56788999999997 3665 59999997521
Q ss_pred -CCC----HHHHHHHHHHcCCCh-HHHhhcCCcccc-------ccccccCCCEEEEecCCcCCCHHHHHHHHHHHHHhc-
Q 037346 1033 -EHA----DEQIWEALDKCQLGD-EVRKKKGKLDSQ-------GRVLLKKSKVLVLDEATASVDTATDNQIQQTLRQHF- 1098 (1156)
Q Consensus 1033 -~~~----deei~~al~~~~l~~-~i~~lp~gl~s~-------ARALLr~~~ILiLDEaTS~LD~~te~~I~~~l~~~~- 1098 (1156)
... .+++.+++++.++.+ .....+..|..+ ||||+++|++|||||||++||+.+.+.+.+.|+++.
T Consensus 372 ~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~ 451 (500)
T TIGR02633 372 MRIDAAAELQIIGSAIQRLKVKTASPFLPIGRLSGGNQQKAVLAKMLLTNPRVLILDEPTRGVDVGAKYEIYKLINQLAQ 451 (500)
T ss_pred CcCCHHHHHHHHHHHHHhcCccCCCccCccccCCHHHHHHHHHHHHHhhCCCEEEEcCCCCCcCHhHHHHHHHHHHHHHh
Confidence 111 245788999999963 445555555544 899999999999999999999999999999988764
Q ss_pred CCceEEEeecCcccccc-cCEEEEEeCcEEeeecChhHH
Q 037346 1099 SDCTVVTIAHRITSVLD-SAMVLLLNHGLIKEYDSPTKL 1136 (1156)
Q Consensus 1099 ~~~TvI~IaHrl~ti~~-~D~I~Vl~~G~IvE~G~~~eL 1136 (1156)
++.|||+|||+++.+.. ||+|++|++|+|+..++.+++
T Consensus 452 ~g~tviivsHd~~~~~~~~d~v~~l~~G~i~~~~~~~~~ 490 (500)
T TIGR02633 452 EGVAIIVVSSELAEVLGLSDRVLVIGEGKLKGDFVNHAL 490 (500)
T ss_pred CCCEEEEECCCHHHHHHhCCEEEEEECCEEEEEEccccC
Confidence 47899999999998865 999999999999987765443
|
Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005). |
| >PLN03232 ABC transporter C family member; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.9e-57 Score=601.74 Aligned_cols=444 Identities=19% Similarity=0.198 Sum_probs=324.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcCCccccCCCCHHHHHHHHHHHHHH---H----HH-HHH---HHHH---HHHHHHHHHH
Q 037346 135 VQQFGIRFRATLFAMIYNKGLTLSGQAKQGNTSGEIINLIAVDAER---A----LL-ILY---KKLG---LASIATLLAT 200 (1156)
Q Consensus 135 ~~~~~~~~r~~l~~~i~~k~l~l~~~~~~~~~~g~i~nl~s~D~~~---~----~~-ll~---~~lg---~~~l~~~~~~ 200 (1156)
..+.+.+.-..++..+|+++++.+...++++++|+++|++++|++. . +. ++. ..++ ..+......+
T Consensus 974 ~~~~~~~~~~~lr~~l~~~ll~~p~~ff~~~~~G~ilnr~s~Di~~id~~l~~~~~~~~~~~~~~i~~~i~~~~~~~~~~ 1053 (1495)
T PLN03232 974 LISSSLHAAKRLHDAMLNSILRAPMLFFHTNPTGRVINRFSKDIGDIDRNVANLMNMFMNQLWQLLSTFALIGTVSTISL 1053 (1495)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCeeeeCcCCchHHHHHhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566778888888999999999999999999999999999999987 0 00 000 0000 0000000000
Q ss_pred HHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH--HHHHH---HHHHHHH-HH
Q 037346 201 AIVMLANF-------PLGRLREKFQDKFMETKDRRIKATSEILRNMRILKLQGWELKKNE--TAWLK---KSVYTEA-MI 267 (1156)
Q Consensus 201 ~~~~~~~~-------~~~~~~~~~~~~~~~~~d~r~~~~~e~l~~i~~IK~~~~e~r~~e--~~~~~---~~~~~~~-~~ 267 (1156)
++++++.. ...+..+..++.....+....+..+|.++|+++||.|++|.|-.+ .+... +..+... ..
T Consensus 1054 ~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~s~~~~~~~E~l~G~~tIraf~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1133 (1495)
T PLN03232 1054 WAIMPLLILFYAAYLYYQSTSREVRRLDSVTRSPIYAQFGEALNGLSSIRAYKAYDRMAKINGKSMDNNIRFTLANTSSN 1133 (1495)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHhcChHHHhcCCcHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 01111111 111111223333333444456788999999999999999822111 11111 1111110 00
Q ss_pred HHHHHHH-HHHHHHHHH-HHHHHh-CCCcc-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC
Q 037346 268 SFFCWGA-PTFVSVVTF-GSCILL-GIPLE-----SGMILSALTTFKILQEPIYYLPESISMMIQAKVPLDRIASFLCLE 339 (1156)
Q Consensus 268 ~~~~~~~-~~~~~~~~f-~~~~~~-~~~lt-----~~~~ft~l~~~~~l~~pl~~l~~~~~~~~~a~~s~~Ri~~fl~~~ 339 (1156)
..+.... .....++++ +.+.+. .+.+. ++.+..++++...+..|+..+...+..+..+.+|.+||.++++.+
T Consensus 1134 ~wl~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~g~~~~~~~~~~~~l~~l~~~~~~~~~~~~s~eRi~e~~~~~ 1213 (1495)
T PLN03232 1134 RWLTIRLETLGGVMIWLTATFAVLRNGNAENQAGFASTMGLLLSYTLNITTLLSGVLRQASKAENSLNSVERVGNYIDLP 1213 (1495)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 0000000 011111122 222222 22221 223333556666778899999999999999999999999999876
Q ss_pred CCCccc-cccCCC--CCCCccEEEeeeEEEeCCCCCCCccccceEEeeCCeEEEEEcCCCCChHHHHHHHhCCCCCCCcE
Q 037346 340 GLQTDV-LEKMPR--GNSDTAIEIIDGSFSWDFSSPNPTLRNINLKVFHGMRVAVCGTVGSGKSSCLSCILGGVPKESGI 416 (1156)
Q Consensus 340 ~~~~~~-~~~~~~--~~~~~~i~~~~~~f~~~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKSTll~~i~g~~~~~~G~ 416 (1156)
++.+.. ....+. .+..+.|+|+|++|+|+.+ .+++|+|+||+|++||.+||||+||||||||+++|+|+++|++|+
T Consensus 1214 ~e~~~~~~~~~~~~~~p~~g~I~f~nVsf~Y~~~-~~~vL~~isl~I~~GekvaIVG~SGSGKSTL~~lL~rl~~p~~G~ 1292 (1495)
T PLN03232 1214 SEATAIIENNRPVSGWPSRGSIKFEDVHLRYRPG-LPPVLHGLSFFVSPSEKVGVVGRTGAGKSSMLNALFRIVELEKGR 1292 (1495)
T ss_pred ccccccccCCCCCCCCCCCCcEEEEEEEEEECCC-CCcccccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCcCCCce
Confidence 432211 011111 1234579999999999632 357999999999999999999999999999999999999999999
Q ss_pred EEEcCe-------------EEEEecCCcCCCccHHHHhhcCCCCCHHHHHHHHHHhCCchhhhhCCCCCccccccCCCCC
Q 037346 417 IRLCGT-------------KAYVAQSPWIQSGKIEENILFGKEMDRERYERVLEACSLKKDLEVLPFGDQTIIGERGINL 483 (1156)
Q Consensus 417 i~~~g~-------------~~~v~Q~~~~~~~ti~eni~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~t~v~~~g~~L 483 (1156)
|.+||. ++||||+|.+|++||||||.++.++++++..++++.+++.+++..+|+|++|.+|++|.+|
T Consensus 1293 I~IdG~di~~i~~~~lR~~i~iVpQdp~LF~gTIr~NL~~~~~~sdeei~~al~~a~l~~~I~~lp~GLdt~v~e~G~~L 1372 (1495)
T PLN03232 1293 IMIDDCDVAKFGLTDLRRVLSIIPQSPVLFSGTVRFNIDPFSEHNDADLWEALERAHIKDVIDRNPFGLDAEVSEGGENF 1372 (1495)
T ss_pred EEECCEEhhhCCHHHHHhhcEEECCCCeeeCccHHHHcCCCCCCCHHHHHHHHHHcCCHHHHHhCcCCCCceecCCCCCC
Confidence 999993 6999999999999999999998888999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHhhccCCCeeeeeCCCCCcCHHHHHHHHHHHHh-cCCCEEEEEccCCCccccCCEEEEEeCCeEEEccC
Q 037346 484 SGGQKQRIQIARPLYQDADIFLLDDPFSPVDDHTGAHLFKFCWV-SSSKTVIYATHQVEFLPAADLILVIKDGKITQAGK 562 (1156)
Q Consensus 484 SgGqkqRi~lAral~~~~~illlDep~s~lD~~~~~~i~~~~~~-~~~~tvi~vtH~~~~~~~~d~i~~l~~G~i~~~g~ 562 (1156)
|||||||++|||||+++|+|+|||||||+||+++++.|.+.+.. .+++|+|+||||++++..||+|++|++|+|++.|+
T Consensus 1373 SgGQrQrlaLARALLr~~~ILILDEATSaLD~~Te~~Iq~~L~~~~~~~TvI~IAHRl~ti~~~DrIlVL~~G~ivE~Gt 1452 (1495)
T PLN03232 1373 SVGQRQLLSLARALLRRSKILVLDEATASVDVRTDSLIQRTIREEFKSCTMLVIAHRLNTIIDCDKILVLSSGQVLEYDS 1452 (1495)
T ss_pred CHHHHHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHcCCCEEEEEeCCHHHHHhCCEEEEEECCEEEEECC
Confidence 99999999999999999999999999999999999988776654 47899999999999999999999999999999999
Q ss_pred hHHHHhcCc-chHHHHHh
Q 037346 563 YSDILNSGT-DFMELVGA 579 (1156)
Q Consensus 563 ~~~l~~~~~-~~~~~~~~ 579 (1156)
|++++++++ .|.++++.
T Consensus 1453 ~~eLl~~~~~~f~~l~~~ 1470 (1495)
T PLN03232 1453 PQELLSRDTSAFFRMVHS 1470 (1495)
T ss_pred HHHHHhCCCCHHHHHHHH
Confidence 999998764 78888754
|
|
| >TIGR01192 chvA glucan exporter ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-57 Score=561.69 Aligned_cols=428 Identities=20% Similarity=0.289 Sum_probs=338.8
Q ss_pred HHHHHHHHHHHHHhccccccccccccccchhhhhcccccccchhhhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 037346 715 KTATQLFNKMHVCIFRAPMYFFDSTPSGRILNRVSENVKWADQSAADMDIPYDIGAFAFSMIQLLGIIVVMSLVAWQVLI 794 (1156)
Q Consensus 715 ~~~~~l~~~l~~~ll~~p~~ff~~~~~G~il~R~s~d~~~~d~~~~d~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l 794 (1156)
+....++.+++++++++|++||+++++|++++|++ .|+..+...+...+..++..++.+++.+++++.++|.+++
T Consensus 86 ~~~~~lr~~~~~~l~~l~~~~~~~~~~g~~~s~~~-----~d~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~l 160 (585)
T TIGR01192 86 GRRATLLTEAFGRIISMPLSWHQQRGTSNALHTLL-----RATETLFGLWLEFMRQHLATFVALFLLIPTAFAMDWRLSI 160 (585)
T ss_pred HHHHHHHHHHHHHHHcCCHHHhCCCChhHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445667999999999999999999999999999 6666665555555666666667777777888889999988
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhChHHHHHHhhccchhhhhhcchHHHHHHHHHHHHHHHhhHHHHHHHHHH
Q 037346 795 VFVPVIATFIWYQQYYITSTRELSRLIGVCKAPVIQQFSETISGSTTIRSLDQELRFRDTNMKLIDEYSRPKFHIAGAME 874 (1156)
Q Consensus 795 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~e~l~Gi~tIra~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~ 874 (1156)
+++.+++++.++...+.+..++..+......+...+++.|+++|+++||+|+.++.+.+++.+..++..+..+.......
T Consensus 161 i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (585)
T TIGR01192 161 VLMVLGILYILIAKLVMQRTKNGQAAVEHHYHNVFKHVSDSISNVSVVHSYNRIEAETSALKQFTNNLLSAQYPVLDWWA 240 (585)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 87777777777777777777777777777888899999999999999999999999999998888877665554433333
Q ss_pred HHHHHHHHHHHHHHHH---HHHHHH---------------------HcCCCccchHHHHHHHhHHHHHHHHhhcCCCCCc
Q 037346 875 WLRFCIDMLSSITFAF---SLAFLI---------------------SVPNGIIHPYKNLERKIISVERILQCACIPSEPA 930 (1156)
Q Consensus 875 ~~~~~l~~~~~~~~~~---~~~~~~---------------------~~~~~~~~~~~~~~~~~~s~~Ri~~~~~~~~e~~ 930 (1156)
+......++..+...+ .....+ .+.........++.....+.+|+.++.+.+++..
T Consensus 241 ~~~~~~~~~~~~~~~~v~~~g~~~v~~g~it~g~l~a~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~ri~~~~~~~~~~~ 320 (585)
T TIGR01192 241 LASGLNRMASTISMMCILVIGTVLVIKGELSVGEVIAFIGFANLLIGRLDQMSGFITQIFEARAKLEDFFDLEDSVFQRE 320 (585)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcccc
Confidence 2222222211111110 000000 0001111112455667788899998876554321
Q ss_pred ccccCCCCCCCCC-CCCeEEEEEEEEEEcCC--------------CCceeeCCCCCCHHHHHHHHhhcccCCCceEEEcC
Q 037346 931 LVIEATKPNNSRP-SHGEVNIRHLQVRYAPN--------------LPLVLRGRTGSGKSTLIQTLFRIVESTAGHILIDG 995 (1156)
Q Consensus 931 ~~~~~~~~~~~~p-~~g~I~~~~Vsf~Y~~~--------------~~~vL~G~SGsGKSTL~~lL~rl~~p~~G~I~idG 995 (1156)
. ...+ ..++ ..+.++|+||+|+|+++ +.++|+|+||||||||+++|+|+++|++|+|.+||
T Consensus 321 ~---~~~~-~~~~~~~~~i~~~~v~~~y~~~~~~l~~i~~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g 396 (585)
T TIGR01192 321 E---PADA-PELPNVKGAVEFRHITFEFANSSQGVFDVSFEAKAGQTVAIVGPTGAGKTTLINLLQRVYDPTVGQILIDG 396 (585)
T ss_pred C---CccC-CCCCCCCCeEEEEEEEEECCCCCccccceeEEEcCCCEEEEECCCCCCHHHHHHHHccCCCCCCCEEEECC
Confidence 1 0111 1111 24679999999999643 23467799999999999999999999999999999
Q ss_pred eeCCCCChHHHhhcCeeeccccccccccchhccCCCC-CCCHHHHHHHHHHcCCChHHHhhcCCcccc------------
Q 037346 996 KDISLIGLHDLRTRLSIIPQDPTMFEGTTRSNLDPLE-EHADEQIWEALDKCQLGDEVRKKKGKLDSQ------------ 1062 (1156)
Q Consensus 996 ~di~~i~~~~LR~~i~~VpQdp~LF~gTIr~Nl~~~~-~~~deei~~al~~~~l~~~i~~lp~gl~s~------------ 1062 (1156)
+|+++++.+++|+++++|||||.+|++|+||||.++. +.+|+++++|++.+++++++.++|+|+++.
T Consensus 397 ~~~~~~~~~~~~~~i~~v~q~~~lf~~ti~~Ni~~~~~~~~~~~~~~a~~~~~~~~~i~~l~~g~~t~~~~~~~~LSgGq 476 (585)
T TIGR01192 397 IDINTVTRESLRKSIATVFQDAGLFNRSIRENIRLGREGATDEEVYEAAKAAAAHDFILKRSNGYDTLVGERGNRLSGGE 476 (585)
T ss_pred EEhhhCCHHHHHhheEEEccCCccCcccHHHHHhcCCCCCCHHHHHHHHHHhCcHHHHHhccccccchhcCCCCCCCHHH
Confidence 9999999999999999999999999999999998874 467999999999999999999999999864
Q ss_pred ------ccccccCCCEEEEecCCcCCCHHHHHHHHHHHHHhcCCceEEEeecCcccccccCEEEEEeCcEEeeecChhHH
Q 037346 1063 ------GRVLLKKSKVLVLDEATASVDTATDNQIQQTLRQHFSDCTVVTIAHRITSVLDSAMVLLLNHGLIKEYDSPTKL 1136 (1156)
Q Consensus 1063 ------ARALLr~~~ILiLDEaTS~LD~~te~~I~~~l~~~~~~~TvI~IaHrl~ti~~~D~I~Vl~~G~IvE~G~~~eL 1136 (1156)
||||+++|+|||||||||+||++|++.|++.|++..+++|+|+||||++++..||+|++|++|+++|.|+|++|
T Consensus 477 ~qrl~lARall~~p~ililDEpts~LD~~~~~~i~~~l~~~~~~~tvI~isH~~~~~~~~d~i~~l~~G~i~~~g~~~~l 556 (585)
T TIGR01192 477 RQRLAIARAILKNAPILVLDEATSALDVETEARVKNAIDALRKNRTTFIIAHRLSTVRNADLVLFLDQGRLIEKGSFQEL 556 (585)
T ss_pred HHHHHHHHHHhcCCCEEEEECCccCCCHHHHHHHHHHHHHHhCCCEEEEEEcChHHHHcCCEEEEEECCEEEEECCHHHH
Confidence 89999999999999999999999999999999998889999999999999999999999999999999999999
Q ss_pred hcCCCChHHHHHHHHh
Q 037346 1137 LENKSSSFAQLVAEYT 1152 (1156)
Q Consensus 1137 l~~~~g~f~~l~~~~~ 1152 (1156)
+++ +|.|++|++.+.
T Consensus 557 ~~~-~~~y~~l~~~~~ 571 (585)
T TIGR01192 557 IQK-DGRFYKLLRRSG 571 (585)
T ss_pred HHC-CChHHHHHHhCc
Confidence 975 789999998653
|
This model describes glucan exporter ATP binding protein in bacteria. It belongs to the larger ABC transporter superfamily with the characteristic ATP binding motif. The In general, this protein is in some ways implicated in osmoregulation and suggested to participate in the export of glucan from the cytoplasm to periplasm. The cyclic beta-1,2-glucan in the bactrerial periplasmic space is suggested to confer the property of high osmolority. It has also been demonstrated that mutants in this loci have lost functions of virulence and motility. It is unclear as to how virulence and osmoadaptaion are related. |
| >KOG0057 consensus Mitochondrial Fe/S cluster exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.2e-58 Score=516.02 Aligned_cols=431 Identities=19% Similarity=0.344 Sum_probs=309.2
Q ss_pred HHHHHHHHHHHHHHHHhccccccccccccccchhhhhcccccccchhhhcccchHHHHHHHHHHHHHHHHHHHHHH-HHH
Q 037346 712 AGYKTATQLFNKMHVCIFRAPMYFFDSTPSGRILNRVSENVKWADQSAADMDIPYDIGAFAFSMIQLLGIIVVMSL-VAW 790 (1156)
Q Consensus 712 ~~~~~~~~l~~~l~~~ll~~p~~ff~~~~~G~il~R~s~d~~~~d~~~~d~~l~~~~~~~~~~~~~~~~~~~~~~~-~~~ 790 (1156)
...++.+....+.|++++++.++||.+..+|.+.+++. .-...+...+...+..++..++.+......+.+ ..+
T Consensus 101 v~q~~iR~~~~~vf~~~~~ld~~~~~~~~tG~l~~~id-----RgsraI~~vl~~~V~~i~p~~~~i~~v~~~l~~~~Ga 175 (591)
T KOG0057|consen 101 VAQRVIRDSSSDVFRHLMSLDLSFFLSRGTGALNRIID-----RGSRAISFVLSAMVFNIIPTLFEIALVSGILYYKFGA 175 (591)
T ss_pred HHHHHHHHHHHHHHHHHHhhhHHhhcCCCcchHHHHHH-----hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhch
Confidence 45677788888999999999999999999999988887 333333333333333333333222222211111 223
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhChHHHHHHhhccchhhhhhcchHHHHHHHHHHHHHHHhhHHHHHH
Q 037346 791 QVLIVFVPVIATFIWYQQYYITSTRELSRLIGVCKAPVIQQFSETISGSTTIRSLDQELRFRDTNMKLIDEYSRPKFHIA 870 (1156)
Q Consensus 791 ~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~e~l~Gi~tIra~~~e~~~~~~~~~~~~~~~~~~~~~~ 870 (1156)
.++++++..+..|..+.....+.....++....+.......+.|++.+-.+||+||.|++..++|...+..+.++.....
T Consensus 176 ~~~li~~~~v~~Y~a~Ti~~t~~Rn~fR~~~N~Adn~as~~~~dsL~Nye~VKsfNnE~~Ea~~y~~~l~~~~~~~~~~~ 255 (591)
T KOG0057|consen 176 AFALITLGTVGAYAAFTIVVTRWRNRFRKAMNNADNSASRRAYDSLINYEIVKSFNNEEYEASRYDGSLKTYERAGLKYS 255 (591)
T ss_pred HHHHHHHHHHHHhheeEEeehhHHHHHHHHHHhhhhHHHHHHHHHHhhHHHHHHcccHHHHHHHHHHHHHHHHHhhhhHH
Confidence 33333333333332222222222223334444556667788999999999999999999999999999999888777766
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH-cCCCccch-----------------------HHHHHHHhHHHHHHHHhhcCC
Q 037346 871 GAMEWLRFCIDMLSSITFAFSLAFLIS-VPNGIIHP-----------------------YKNLERKIISVERILQCACIP 926 (1156)
Q Consensus 871 ~~~~~~~~~l~~~~~~~~~~~~~~~~~-~~~~~~~~-----------------------~~~~~~~~~s~~Ri~~~~~~~ 926 (1156)
.....+.+.-..+.......+..+... ...+.... +.++..++.-.+-+... .+
T Consensus 256 ~sl~~lnfgQ~~iFsv~~~~im~l~~~gi~~~~mtvgdlv~~n~l~~qL~~~l~~Lg~vyr~~~q~l~Dm~~~~~l--~~ 333 (591)
T KOG0057|consen 256 SSLAFLNFGQKAIFSVALTFIMVLGSNGIAAGKMTVGDLVMVNSLLFQLSLPLNFLGSVYRELRQALTDMRTLFIL--LE 333 (591)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccccccchhhHHHHHHHHHhHHHHHHHHHHHHHHHHHhHHHHHhh--hh
Confidence 655555444433332222221111110 00100000 01222222222211111 11
Q ss_pred CCCcccccCCCCCCCCCCCCeEEEEEEEEEEcCCC--------------CceeeCCCCCCHHHHHHHHhhcccCCCceEE
Q 037346 927 SEPALVIEATKPNNSRPSHGEVNIRHLQVRYAPNL--------------PLVLRGRTGSGKSTLIQTLFRIVESTAGHIL 992 (1156)
Q Consensus 927 ~e~~~~~~~~~~~~~~p~~g~I~~~~Vsf~Y~~~~--------------~~vL~G~SGsGKSTL~~lL~rl~~p~~G~I~ 992 (1156)
.+. ..... +.+.....|.|+|+||+|.|.|+. +++++|+|||||||++++|+||+| ++|+|+
T Consensus 334 ~~~--~i~~~-~~~i~~~~~~I~F~dV~f~y~~k~~iL~gvsf~I~kGekVaIvG~nGsGKSTilr~LlrF~d-~sG~I~ 409 (591)
T KOG0057|consen 334 VDE--DIQEA-ALPIELFGGSIEFDDVHFSYGPKRKVLKGVSFTIPKGEKVAIVGSNGSGKSTILRLLLRFFD-YSGSIL 409 (591)
T ss_pred hhh--hhhhc-cCCcccCCCcEEEEeeEEEeCCCCceecceeEEecCCCEEEEECCCCCCHHHHHHHHHHHhc-cCCcEE
Confidence 111 11111 112223457899999999997654 356779999999999999999999 999999
Q ss_pred EcCeeCCCCChHHHhhcCeeeccccccccccchhccCCCCC-CCHHHHHHHHHHcCCChHHHhhcCCcccc---------
Q 037346 993 IDGKDISLIGLHDLRTRLSIIPQDPTMFEGTTRSNLDPLEE-HADEQIWEALDKCQLGDEVRKKKGKLDSQ--------- 1062 (1156)
Q Consensus 993 idG~di~~i~~~~LR~~i~~VpQdp~LF~gTIr~Nl~~~~~-~~deei~~al~~~~l~~~i~~lp~gl~s~--------- 1062 (1156)
|||+||++++++.+|+.||+||||..||++||-+||.++++ .++||+.++||++++||.+.++|+||+|.
T Consensus 410 IdG~dik~~~~~SlR~~Ig~VPQd~~LFndTIl~NI~YGn~sas~eeV~e~~k~a~~hd~i~~l~~GY~T~VGerG~~LS 489 (591)
T KOG0057|consen 410 IDGQDIKEVSLESLRQSIGVVPQDSVLFNDTILYNIKYGNPSASDEEVVEACKRAGLHDVISRLPDGYQTLVGERGLMLS 489 (591)
T ss_pred ECCeeHhhhChHHhhhheeEeCCcccccchhHHHHhhcCCCCcCHHHHHHHHHHcCcHHHHHhccccchhhHhhcccccc
Confidence 99999999999999999999999999999999999999875 57999999999999999999999999976
Q ss_pred ---------ccccccCCCEEEEecCCcCCCHHHHHHHHHHHHHhcCCceEEEeecCcccccccCEEEEEeCcEEeeecCh
Q 037346 1063 ---------GRVLLKKSKVLVLDEATASVDTATDNQIQQTLRQHFSDCTVVTIAHRITSVLDSAMVLLLNHGLIKEYDSP 1133 (1156)
Q Consensus 1063 ---------ARALLr~~~ILiLDEaTS~LD~~te~~I~~~l~~~~~~~TvI~IaHrl~ti~~~D~I~Vl~~G~IvE~G~~ 1133 (1156)
|||+||+|+|+++|||||+||.+||+.|.+.|.....++|+|+|+||++++++||+|+|||+|+|+|.|+|
T Consensus 490 GGekQrvslaRa~lKda~Il~~DEaTS~LD~~TE~~i~~~i~~~~~~rTvI~IvH~l~ll~~~DkI~~l~nG~v~e~gth 569 (591)
T KOG0057|consen 490 GGEKQRVSLARAFLKDAPILLLDEATSALDSETEREILDMIMDVMSGRTVIMIVHRLDLLKDFDKIIVLDNGTVKEYGTH 569 (591)
T ss_pred cchHHHHHHHHHHhcCCCeEEecCcccccchhhHHHHHHHHHHhcCCCeEEEEEecchhHhcCCEEEEEECCeeEEeccH
Confidence 79999999999999999999999999999999998899999999999999999999999999999999999
Q ss_pred hHHhcCCCChHHHHHHHHhcc
Q 037346 1134 TKLLENKSSSFAQLVAEYTSS 1154 (1156)
Q Consensus 1134 ~eLl~~~~g~f~~l~~~~~~~ 1154 (1156)
+||++ +.+.|+.+|..+...
T Consensus 570 ~ell~-~s~~~~~~w~~~~~~ 589 (591)
T KOG0057|consen 570 SELLA-PSELYADLWTTQTSS 589 (591)
T ss_pred HHHhh-hhhHHHHHhcccccc
Confidence 99998 688999999876543
|
|
| >PRK10789 putative multidrug transporter membrane\ATP-binding components; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-57 Score=559.52 Aligned_cols=431 Identities=19% Similarity=0.287 Sum_probs=338.5
Q ss_pred HHHHHHHHHHHHHHHHhccccccccccccccchhhhhcccccccchhhhcccchHHHHHHHHHHHHHHHHHHHH-HHHHH
Q 037346 712 AGYKTATQLFNKMHVCIFRAPMYFFDSTPSGRILNRVSENVKWADQSAADMDIPYDIGAFAFSMIQLLGIIVVM-SLVAW 790 (1156)
Q Consensus 712 ~~~~~~~~l~~~l~~~ll~~p~~ff~~~~~G~il~R~s~d~~~~d~~~~d~~l~~~~~~~~~~~~~~~~~~~~~-~~~~~ 790 (1156)
.+.+...++|.++++++++.|++||+++++|++++|++ .|+..+.......+..++..++..++.++++ +.++|
T Consensus 63 ~~~~~~~~lr~~l~~~ll~~~~~~~~~~~~g~i~srl~-----~Dv~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 137 (569)
T PRK10789 63 ASYQLAVELREDFYRQLSRQHPEFYLRHRTGDLMARAT-----NDVDRVVFAAGEGVLTLVDSLVMGCAVLIVMSTQISW 137 (569)
T ss_pred HHHHHHHHHHHHHHHHHHcCCHHHHcCCCHHHHHHHHH-----HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 46788889999999999999999999999999999999 6666665444444555555545545554444 47888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhChHHHHHHhhccchhhhhhcchHHHHHHHHHHHHHHHhhHHHHHH
Q 037346 791 QVLIVFVPVIATFIWYQQYYITSTRELSRLIGVCKAPVIQQFSETISGSTTIRSLDQELRFRDTNMKLIDEYSRPKFHIA 870 (1156)
Q Consensus 791 ~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~e~l~Gi~tIra~~~e~~~~~~~~~~~~~~~~~~~~~~ 870 (1156)
+++++++..+++.+++...+.+..++..+......+.+.+.+.|+++|+++||+|+.|+.+.+++.+..++..+......
T Consensus 138 ~l~li~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~i~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~ 217 (569)
T PRK10789 138 QLTLLALLPMPVMAIMIKRYGDQLHERFKLAQAAFSSLNDRTQESLTSIRMIKAFGLEDRQSALFAADAEDTGKKNMRVA 217 (569)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChHHHHHhcccHHHHHHHHHHHHHHHHHHHHHH
Confidence 88777666666666666666666666666666677889999999999999999999999999999998887766665544
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH---HH---------------------HHHcCCCccchHHHHHHHhHHHHHHHHhhcCC
Q 037346 871 GAMEWLRFCIDMLSSITFAFSL---AF---------------------LISVPNGIIHPYKNLERKIISVERILQCACIP 926 (1156)
Q Consensus 871 ~~~~~~~~~l~~~~~~~~~~~~---~~---------------------~~~~~~~~~~~~~~~~~~~~s~~Ri~~~~~~~ 926 (1156)
....+..........+...+.+ .+ +..+..........+.....+.+|+.++.+.+
T Consensus 218 ~~~~~~~~~~~~~~~~~~~~~l~~g~~lv~~g~lt~g~l~a~~~~~~~~~~pl~~l~~~~~~~~~~~~a~~ri~~ll~~~ 297 (569)
T PRK10789 218 RIDARFDPTIYIAIGMANLLAIGGGSWMVVNGSLTLGQLTSFVMYLGLMIWPMLALAWMFNIVERGSAAYSRIRAMLAEA 297 (569)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 4333332222221111110000 00 00001111112256777888999999998765
Q ss_pred CCCcccccCCCCCCCCCCCCeEEEEEEEEEEcCCC---------------CceeeCCCCCCHHHHHHHHhhcccCCCceE
Q 037346 927 SEPALVIEATKPNNSRPSHGEVNIRHLQVRYAPNL---------------PLVLRGRTGSGKSTLIQTLFRIVESTAGHI 991 (1156)
Q Consensus 927 ~e~~~~~~~~~~~~~~p~~g~I~~~~Vsf~Y~~~~---------------~~vL~G~SGsGKSTL~~lL~rl~~p~~G~I 991 (1156)
++... .... ..+..+.|+|+||+|+|+.+. .++|+|+||||||||+++|+|+|+|++|+|
T Consensus 298 ~~~~~---~~~~--~~~~~~~I~~~~v~~~y~~~~~~~l~~i~~~i~~G~~~~ivG~sGsGKSTLl~ll~g~~~p~~G~i 372 (569)
T PRK10789 298 PVVKD---GSEP--VPEGRGELDVNIRQFTYPQTDHPALENVNFTLKPGQMLGICGPTGSGKSTLLSLIQRHFDVSEGDI 372 (569)
T ss_pred CcccC---CCCC--CCCCCCcEEEEEEEEECCCCCCccccCeeEEECCCCEEEEECCCCCCHHHHHHHHhcccCCCCCEE
Confidence 44321 1000 112346799999999996432 245669999999999999999999999999
Q ss_pred EEcCeeCCCCChHHHhhcCeeeccccccccccchhccCCCC-CCCHHHHHHHHHHcCCChHHHhhcCCcccc--------
Q 037346 992 LIDGKDISLIGLHDLRTRLSIIPQDPTMFEGTTRSNLDPLE-EHADEQIWEALDKCQLGDEVRKKKGKLDSQ-------- 1062 (1156)
Q Consensus 992 ~idG~di~~i~~~~LR~~i~~VpQdp~LF~gTIr~Nl~~~~-~~~deei~~al~~~~l~~~i~~lp~gl~s~-------- 1062 (1156)
.+||+|+++++.+++|+++++|||+|++|+|||||||.++. +.+|+++++|++.+++++++.++|+|+++.
T Consensus 373 ~~~g~~~~~~~~~~~~~~i~~v~q~~~lf~~ti~~Ni~~~~~~~~~~~~~~~~~~~~l~~~i~~lp~gl~t~~~~~g~~L 452 (569)
T PRK10789 373 RFHDIPLTKLQLDSWRSRLAVVSQTPFLFSDTVANNIALGRPDATQQEIEHVARLASVHDDILRLPQGYDTEVGERGVML 452 (569)
T ss_pred EECCEEHhhCCHHHHHhheEEEccCCeeccccHHHHHhcCCCCCCHHHHHHHHHHcCCHHHHHhCcCcccceecCCCCcC
Confidence 99999999999999999999999999999999999999874 578999999999999999999999999974
Q ss_pred ----------ccccccCCCEEEEecCCcCCCHHHHHHHHHHHHHhcCCceEEEeecCcccccccCEEEEEeCcEEeeecC
Q 037346 1063 ----------GRVLLKKSKVLVLDEATASVDTATDNQIQQTLRQHFSDCTVVTIAHRITSVLDSAMVLLLNHGLIKEYDS 1132 (1156)
Q Consensus 1063 ----------ARALLr~~~ILiLDEaTS~LD~~te~~I~~~l~~~~~~~TvI~IaHrl~ti~~~D~I~Vl~~G~IvE~G~ 1132 (1156)
|||++++|+|||||||||+||+++++.|.+.|++..+++|+|+||||++++..||+|++|++|+|+|.|+
T Consensus 453 SgGq~qRi~lARall~~~~illlDEpts~LD~~~~~~i~~~l~~~~~~~tii~itH~~~~~~~~d~i~~l~~G~i~~~g~ 532 (569)
T PRK10789 453 SGGQKQRISIARALLLNAEILILDDALSAVDGRTEHQILHNLRQWGEGRTVIISAHRLSALTEASEILVMQHGHIAQRGN 532 (569)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEECccccCCHHHHHHHHHHHHHHhCCCEEEEEecchhHHHcCCEEEEEeCCEEEEecC
Confidence 8999999999999999999999999999999999888999999999999999999999999999999999
Q ss_pred hhHHhcCCCChHHHHHHHHhc
Q 037346 1133 PTKLLENKSSSFAQLVAEYTS 1153 (1156)
Q Consensus 1133 ~~eLl~~~~g~f~~l~~~~~~ 1153 (1156)
|++|+++ +|.|++|++.++.
T Consensus 533 ~~~l~~~-~~~y~~l~~~~~~ 552 (569)
T PRK10789 533 HDQLAQQ-SGWYRDMYRYQQL 552 (569)
T ss_pred HHHHHHc-CChHHHHHHHhhh
Confidence 9999975 6899999986543
|
|
| >TIGR02204 MsbA_rel ABC transporter, permease/ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-57 Score=560.50 Aligned_cols=432 Identities=20% Similarity=0.295 Sum_probs=348.4
Q ss_pred HHHHHHHHHHHHHHHHhccccccccccccccchhhhhcccccccchhhhcccchHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 037346 712 AGYKTATQLFNKMHVCIFRAPMYFFDSTPSGRILNRVSENVKWADQSAADMDIPYDIGAFAFSMIQLLGIIVVMSLVAWQ 791 (1156)
Q Consensus 712 ~~~~~~~~l~~~l~~~ll~~p~~ff~~~~~G~il~R~s~d~~~~d~~~~d~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 791 (1156)
.+.+....+|..+++++++.|..+|++.++|++++|++ .|...++......+..++..++.+++.+++++.++|+
T Consensus 85 ~~~~~~~~lr~~l~~~l~~~~~~~~~~~~~g~~~~~~~-----~d~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (576)
T TIGR02204 85 LGERVVADIRRAVFAHLISLSPSFFDKNRSGEVVSRLT-----TDTTLLQSVIGSSLSMALRNALMCIGGLIMMFITSPK 159 (576)
T ss_pred HHHHHHHHHHHHHHHHHHcCCHHHHccCCccHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Confidence 45577889999999999999999999999999999999 7777777766667777777788888888888889999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhChHHHHHHhhccchhhhhhcchHHHHHHHHHHHHHHHhhHHHHHHH
Q 037346 792 VLIVFVPVIATFIWYQQYYITSTRELSRLIGVCKAPVIQQFSETISGSTTIRSLDQELRFRDTNMKLIDEYSRPKFHIAG 871 (1156)
Q Consensus 792 l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~e~l~Gi~tIra~~~e~~~~~~~~~~~~~~~~~~~~~~~ 871 (1156)
++++++..+++.+++..++.+..+...+......+...+++.|.++|+++||+++.++++.+++.+..++..+...+...
T Consensus 160 l~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (576)
T TIGR02204 160 LTSLVLLAVPLVLLPILLFGRRVRKLSRESQDRIADAGSYAGETLGAIRTVQAFGHEDAERSRFGGAVEKAYEAARQRIR 239 (576)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHhccCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 87766655555555555566666677777777788899999999999999999999999999999988887776665555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH---HH---------------------HcCCCccchHHHHHHHhHHHHHHHHhhcCCC
Q 037346 872 AMEWLRFCIDMLSSITFAFSLAF---LI---------------------SVPNGIIHPYKNLERKIISVERILQCACIPS 927 (1156)
Q Consensus 872 ~~~~~~~~l~~~~~~~~~~~~~~---~~---------------------~~~~~~~~~~~~~~~~~~s~~Ri~~~~~~~~ 927 (1156)
...|+......+..+..++...+ .+ .+.........++.....+++|+.++.+.++
T Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~g~lt~g~~~~~~~~~~~~~~pl~~~~~~~~~~~~~~~~~~ri~~~l~~~~ 319 (576)
T TIGR02204 240 TRALLTAIVIVLVFGAIVGVLWVGAHDVIAGKMSAGTLGQFVFYAVMVAGSIGTLSEVWGELQRAAGAAERLIELLQAEP 319 (576)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCC
Confidence 44444443332221111111100 00 0001111223567778889999999987655
Q ss_pred CCcccccCCCCCCCCCCCCeEEEEEEEEEEcCC----------------CCceeeCCCCCCHHHHHHHHhhcccCCCceE
Q 037346 928 EPALVIEATKPNNSRPSHGEVNIRHLQVRYAPN----------------LPLVLRGRTGSGKSTLIQTLFRIVESTAGHI 991 (1156)
Q Consensus 928 e~~~~~~~~~~~~~~p~~g~I~~~~Vsf~Y~~~----------------~~~vL~G~SGsGKSTL~~lL~rl~~p~~G~I 991 (1156)
+.+... ......++..+.|+|+||+|+|+++ +.+++.|+||||||||+++|+|+|+|++|+|
T Consensus 320 ~~~~~~--~~~~~~~~~~~~i~~~~v~f~y~~~~~~~iL~~inl~i~~Ge~i~IvG~sGsGKSTLlklL~gl~~p~~G~I 397 (576)
T TIGR02204 320 DIKAPA--HPKTLPVPLRGEIEFEQVNFAYPARPDQPALDGLNLTVRPGETVALVGPSGAGKSTLFQLLLRFYDPQSGRI 397 (576)
T ss_pred cCCCCC--CCccCCcCCCceEEEEEEEEECCCCCCCccccceeEEecCCCEEEEECCCCCCHHHHHHHHHhccCCCCCEE
Confidence 422110 0111123345679999999999642 2245669999999999999999999999999
Q ss_pred EEcCeeCCCCChHHHhhcCeeeccccccccccchhccCCCCC-CCHHHHHHHHHHcCCChHHHhhcCCcccc--------
Q 037346 992 LIDGKDISLIGLHDLRTRLSIIPQDPTMFEGTTRSNLDPLEE-HADEQIWEALDKCQLGDEVRKKKGKLDSQ-------- 1062 (1156)
Q Consensus 992 ~idG~di~~i~~~~LR~~i~~VpQdp~LF~gTIr~Nl~~~~~-~~deei~~al~~~~l~~~i~~lp~gl~s~-------- 1062 (1156)
++||+|+++++.+++|++|+|+||||++|+|||||||.++++ .+|++++++|+++++.+++.++|+|+++.
T Consensus 398 ~i~g~~i~~~~~~~~~~~i~~~~Q~~~lf~~Ti~~Ni~~~~~~~~~~~~~~~l~~~~l~~~i~~l~~gl~t~i~~~g~~L 477 (576)
T TIGR02204 398 LLDGVDLRQLDPAELRARMALVPQDPVLFAASVMENIRYGRPDATDEEVEAAARAAHAHEFISALPEGYDTYLGERGVTL 477 (576)
T ss_pred EECCEEHHhcCHHHHHHhceEEccCCccccccHHHHHhcCCCCCCHHHHHHHHHHcCcHHHHHhCCCCCCceeCCCCCcC
Confidence 999999999999999999999999999999999999998654 67899999999999999999999999865
Q ss_pred ----------ccccccCCCEEEEecCCcCCCHHHHHHHHHHHHHhcCCceEEEeecCcccccccCEEEEEeCcEEeeecC
Q 037346 1063 ----------GRVLLKKSKVLVLDEATASVDTATDNQIQQTLRQHFSDCTVVTIAHRITSVLDSAMVLLLNHGLIKEYDS 1132 (1156)
Q Consensus 1063 ----------ARALLr~~~ILiLDEaTS~LD~~te~~I~~~l~~~~~~~TvI~IaHrl~ti~~~D~I~Vl~~G~IvE~G~ 1132 (1156)
|||++++|+|||||||||+||++|++.|.+.|++..+++|+|+||||++.+..||+|++|++|+++|.|+
T Consensus 478 SgGq~Qrl~laRal~~~~~ililDEpts~lD~~~~~~i~~~l~~~~~~~t~IiitH~~~~~~~~d~vi~l~~g~~~~~g~ 557 (576)
T TIGR02204 478 SGGQRQRIAIARAILKDAPILLLDEATSALDAESEQLVQQALETLMKGRTTLIIAHRLATVLKADRIVVMDQGRIVAQGT 557 (576)
T ss_pred CHHHHHHHHHHHHHHhCCCeEEEeCcccccCHHHHHHHHHHHHHHhCCCEEEEEecchHHHHhCCEEEEEECCEEEeeec
Confidence 8999999999999999999999999999999999888999999999999999999999999999999999
Q ss_pred hhHHhcCCCChHHHHHHHH
Q 037346 1133 PTKLLENKSSSFAQLVAEY 1151 (1156)
Q Consensus 1133 ~~eLl~~~~g~f~~l~~~~ 1151 (1156)
|++|++ +++.|++|++.+
T Consensus 558 ~~~l~~-~~~~~~~l~~~~ 575 (576)
T TIGR02204 558 HAELIA-KGGLYARLARLQ 575 (576)
T ss_pred HHHHHH-cCChHHHHHhhc
Confidence 999997 478999998754
|
This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins. |
| >PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-58 Score=561.02 Aligned_cols=431 Identities=19% Similarity=0.258 Sum_probs=321.0
Q ss_pred cEEEeeeEEEeCCCCCCCccccceEEeeCCeEEEEEcCCCCChHHHHHHHhCCCCCCCcEEEEcCe-------------E
Q 037346 357 AIEIIDGSFSWDFSSPNPTLRNINLKVFHGMRVAVCGTVGSGKSSCLSCILGGVPKESGIIRLCGT-------------K 423 (1156)
Q Consensus 357 ~i~~~~~~f~~~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKSTll~~i~g~~~~~~G~i~~~g~-------------~ 423 (1156)
.|+++|+++.|+ +.++|+|+||+|++|++++|+||||||||||+++|+|+++|++|+|.++|. +
T Consensus 3 ~l~~~~l~~~~~---~~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~G~~~p~~G~i~~~~~~~~~~~~~~~~~~i 79 (490)
T PRK10938 3 SLQISQGTFRLS---DTKTLQLPSLTLNAGDSWAFVGANGSGKSALARALAGELPLLSGERQSQFSHITRLSFEQLQKLV 79 (490)
T ss_pred eEEEEeEEEEcC---CeeecccceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCceEEECCcccccCCHHHHHHHh
Confidence 489999999996 346999999999999999999999999999999999999999999998762 5
Q ss_pred EEEecCCcC---------CCccHHHHhhcCCCCCHHHHHHHHHHhCCchhhhhCCCCCccccccCCCCCCHHHHHHHHHH
Q 037346 424 AYVAQSPWI---------QSGKIEENILFGKEMDRERYERVLEACSLKKDLEVLPFGDQTIIGERGINLSGGQKQRIQIA 494 (1156)
Q Consensus 424 ~~v~Q~~~~---------~~~ti~eni~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~t~v~~~g~~LSgGqkqRi~lA 494 (1156)
+|++|++.. +..|++||+.++.. ++++.+++++.+++.+..+ ....+||||||||++||
T Consensus 80 ~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~~~~l~~~~~-----------~~~~~LSgG~~qrv~la 147 (490)
T PRK10938 80 SDEWQRNNTDMLSPGEDDTGRTTAEIIQDEVK-DPARCEQLAQQFGITALLD-----------RRFKYLSTGETRKTLLC 147 (490)
T ss_pred ceeccCcchhhcccchhhccccHHHhcccchh-HHHHHHHHHHHcCCHhhhh-----------CCcccCCHHHHHHHHHH
Confidence 899998743 13589999876532 3456777888888765433 34568999999999999
Q ss_pred HhhccCCCeeeeeCCCCCcCHHHHHHHHHHHHh--cCCCEEEEEccCCCccc-cCCEEEEEeCCeEEEccChHHHHhcCc
Q 037346 495 RPLYQDADIFLLDDPFSPVDDHTGAHLFKFCWV--SSSKTVIYATHQVEFLP-AADLILVIKDGKITQAGKYSDILNSGT 571 (1156)
Q Consensus 495 ral~~~~~illlDep~s~lD~~~~~~i~~~~~~--~~~~tvi~vtH~~~~~~-~~d~i~~l~~G~i~~~g~~~~l~~~~~ 571 (1156)
|||+.+|++|||||||++||+.+.+++.+.+.. .+|+|+|++||+++.+. .||+|++|++|+++..|+++++.....
T Consensus 148 ~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tvii~tH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~~~~~~ 227 (490)
T PRK10938 148 QALMSEPDLLILDEPFDGLDVASRQQLAELLASLHQSGITLVLVLNRFDEIPDFVQFAGVLADCTLAETGEREEILQQAL 227 (490)
T ss_pred HHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHhhCCEEEEEECCEEEEeCCHHHHhcchh
Confidence 999999999999999999999999998887644 35789999999999886 499999999999999888776543100
Q ss_pred chHHHHHhhhhhccCCCCCCCCCcccccccccCCCCCCCcccchhcccccCCCCcccccCccCcchhHHHHhcCcccHHH
Q 037346 572 DFMELVGAHKQALSGLDSIDRGPVSERKSINKENDGTSTTNEIVNKEENKNFQSDDEAALPKGQLVQEEEREKGKVGFSV 651 (1156)
Q Consensus 572 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~g~~~~~~ 651 (1156)
...+... .. . .. .. . +.. .+
T Consensus 228 -~~~~~~~--~~---~----------------~~---------------~~--~------~~~----~~----------- 247 (490)
T PRK10938 228 -VAQLAHS--EQ---L----------------EG---------------VQ--L------PEP----DE----------- 247 (490)
T ss_pred -hhhhhhh--hc---c----------------Cc---------------cc--c------Ccc----cc-----------
Confidence 0000000 00 0 00 00 0 000 00
Q ss_pred HHHHHHHhccchHHHHHHHHHHHHHHHHhhhhhhhhhccccccccCCCCCchhhHHHHHHHHHHHHHHHHHHHHHHhccc
Q 037346 652 YWKYMTTAYGGVLVPFILLAQIIFQIFQIGSNYWMAWATPVAKDVNPAVGASTLIIVYVGAGYKTATQLFNKMHVCIFRA 731 (1156)
Q Consensus 652 ~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~ll~~ 731 (1156)
T Consensus 248 -------------------------------------------------------------------------------- 247 (490)
T PRK10938 248 -------------------------------------------------------------------------------- 247 (490)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cccccccccccchhhhhcccccccchhhhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 037346 732 PMYFFDSTPSGRILNRVSENVKWADQSAADMDIPYDIGAFAFSMIQLLGIIVVMSLVAWQVLIVFVPVIATFIWYQQYYI 811 (1156)
Q Consensus 732 p~~ff~~~~~G~il~R~s~d~~~~d~~~~d~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~ 811 (1156)
| ... ..
T Consensus 248 ~--------------~~~-----~~------------------------------------------------------- 253 (490)
T PRK10938 248 P--------------SAR-----HA------------------------------------------------------- 253 (490)
T ss_pred c--------------ccc-----cc-------------------------------------------------------
Confidence 0 000 00
Q ss_pred HHHHHHHHHHhHhhChHHHHHHhhccchhhhhhcchHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 037346 812 TSTRELSRLIGVCKAPVIQQFSETISGSTTIRSLDQELRFRDTNMKLIDEYSRPKFHIAGAMEWLRFCIDMLSSITFAFS 891 (1156)
Q Consensus 812 ~~~~~~~~~~~~~~s~~~~~~~e~l~Gi~tIra~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 891 (1156)
T Consensus 254 -------------------------------------------------------------------------------- 253 (490)
T PRK10938 254 -------------------------------------------------------------------------------- 253 (490)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHcCCCccchHHHHHHHhHHHHHHHHhhcCCCCCcccccCCCCCCCCCCCCeEEEEEEEEEEcCCCCceeeCCCCC
Q 037346 892 LAFLISVPNGIIHPYKNLERKIISVERILQCACIPSEPALVIEATKPNNSRPSHGEVNIRHLQVRYAPNLPLVLRGRTGS 971 (1156)
Q Consensus 892 ~~~~~~~~~~~~~~~~~~~~~~~s~~Ri~~~~~~~~e~~~~~~~~~~~~~~p~~g~I~~~~Vsf~Y~~~~~~vL~G~SGs 971 (1156)
.. ...+.. +.......++ +...++|++|..++++.++|.|+|||
T Consensus 254 ------~~--------------------------~~~~~l--~~~~l~~~~~--~~~il~~vsl~i~~Ge~~~i~G~NGs 297 (490)
T PRK10938 254 ------LP--------------------------ANEPRI--VLNNGVVSYN--DRPILHNLSWQVNPGEHWQIVGPNGA 297 (490)
T ss_pred ------cC--------------------------CCCceE--EEeceEEEEC--CeeEEeeceEEEcCCCEEEEECCCCC
Confidence 00 000000 0000011111 23478999999999999999999999
Q ss_pred CHHHHHHHHhhcccC-CCceEEEcCeeCCC-CChHHHhhcCeeecccccccc---ccchhccCCC--C------CCC---
Q 037346 972 GKSTLIQTLFRIVES-TAGHILIDGKDISL-IGLHDLRTRLSIIPQDPTMFE---GTTRSNLDPL--E------EHA--- 1035 (1156)
Q Consensus 972 GKSTL~~lL~rl~~p-~~G~I~idG~di~~-i~~~~LR~~i~~VpQdp~LF~---gTIr~Nl~~~--~------~~~--- 1035 (1156)
|||||+++|+|+.+| ++|+|.++|.++.. .+....|++++++||++.++. .|+++++... . ...
T Consensus 298 GKSTLl~~l~G~~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 377 (490)
T PRK10938 298 GKSTLLSLITGDHPQGYSNDLTLFGRRRGSGETIWDIKKHIGYVSSSLHLDYRVSTSVRNVILSGFFDSIGIYQAVSDRQ 377 (490)
T ss_pred CHHHHHHHHcCCCCcccCCeEEEecccCCCCCCHHHHHhhceEECHHHHhhcccCCcHHHHHHhccccccccccCCCHHH
Confidence 999999999998875 69999999987632 234457889999999987643 3677765321 0 111
Q ss_pred HHHHHHHHHHcCCCh-HHHhhcCCcccc-------ccccccCCCEEEEecCCcCCCHHHHHHHHHHHHHhcC-C-ceEEE
Q 037346 1036 DEQIWEALDKCQLGD-EVRKKKGKLDSQ-------GRVLLKKSKVLVLDEATASVDTATDNQIQQTLRQHFS-D-CTVVT 1105 (1156)
Q Consensus 1036 deei~~al~~~~l~~-~i~~lp~gl~s~-------ARALLr~~~ILiLDEaTS~LD~~te~~I~~~l~~~~~-~-~TvI~ 1105 (1156)
++++.++++.+++.+ .....|..|..+ ||||+++|+||||||||++||+++.+.+.+.|+++.+ + .|||+
T Consensus 378 ~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~qrv~la~al~~~p~lllLDEPt~gLD~~~~~~l~~~L~~l~~~~~~tvii 457 (490)
T PRK10938 378 QKLAQQWLDILGIDKRTADAPFHSLSWGQQRLALIVRALVKHPTLLILDEPLQGLDPLNRQLVRRFVDVLISEGETQLLF 457 (490)
T ss_pred HHHHHHHHHHcCCchhhccCchhhCCHHHHHHHHHHHHHhcCCCEEEEcCccccCCHHHHHHHHHHHHHHHhcCCcEEEE
Confidence 346889999999986 655555666544 8999999999999999999999999999999998753 3 47999
Q ss_pred eecCcccccc--cCEEEEEeCcEEeeecC
Q 037346 1106 IAHRITSVLD--SAMVLLLNHGLIKEYDS 1132 (1156)
Q Consensus 1106 IaHrl~ti~~--~D~I~Vl~~G~IvE~G~ 1132 (1156)
|||+++.+.. ||+|++|++|+|++.-+
T Consensus 458 vsHd~~~~~~~~~d~v~~l~~G~i~~~~~ 486 (490)
T PRK10938 458 VSHHAEDAPACITHRLEFVPDGDIYRYVQ 486 (490)
T ss_pred EecchhhhhhhhheeEEEecCCceEEeec
Confidence 9999999974 79999999999987543
|
|
| >TIGR01194 cyc_pep_trnsptr cyclic peptide transporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-56 Score=545.28 Aligned_cols=481 Identities=18% Similarity=0.140 Sum_probs=349.3
Q ss_pred HHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCc-cc-c-hhhHH--HHHHHHHHHHHHHHHHHHHHHH
Q 037346 73 KVLFF-SAWQEILFIAILALLYTLATYVGPYLIDNFVQYLNGRQA-FE-Y-EGYVL--CLSERHWFFQVQQFGIRFRATL 146 (1156)
Q Consensus 73 ~~l~~-~~~~~~~~~~~~~~~~~~~~~~~p~ll~~~i~~~~~~~~-~~-~-~g~~l--~~~~~~~~~~~~~~~~~~r~~l 146 (1156)
..+++ .+++.+++++++.++..++..+.|++++.+++....... .. + .++++ .++.....+...+.+.++...+
T Consensus 9 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~i~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 88 (555)
T TIGR01194 9 LALLRSPFPAITAFSIALGLAGGLAIIALLASINNAIHEENFLGQGSLFSFGGLCLLALLFRIGADIFPAYAGMHIIANL 88 (555)
T ss_pred HHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34667 788889999999999999999999999988874211110 00 0 11111 2222233344577888999999
Q ss_pred HHHHHHHHhcCCccccCCCCHHHHHHHHHHHHHHH--------------------HHHHHHHHHHHHHHHHHHHHHHHHH
Q 037346 147 FAMIYNKGLTLSGQAKQGNTSGEIINLIAVDAERA--------------------LLILYKKLGLASIATLLATAIVMLA 206 (1156)
Q Consensus 147 ~~~i~~k~l~l~~~~~~~~~~g~i~nl~s~D~~~~--------------------~~ll~~~lg~~~l~~~~~~~~~~~~ 206 (1156)
+..+|+|+++++...+++.++|++++++++|++.. ++++++.-...+++.++++++.+++
T Consensus 89 R~~l~~~l~~~~~~~~~~~~~G~l~srl~~Dv~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~li~l~~~~~~~~~ 168 (555)
T TIGR01194 89 RIALCEKILGAPIEEIDRRGAHNLIPLLTHDIDQINAFLFIFPPIAIALAIFFFCIAYLAYLSVPMFAITISAIIIGTAA 168 (555)
T ss_pred HHHHHHHHHcCCHHHHHhcCcchhhHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 99999999999999889999999999999999870 0011100001111111111222222
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 037346 207 NFPLGRLREKFQDKFMETKDRRIKATSEILRNMRILKLQGWELKK-------NETAWLKKSVYTEAMISFFCWGAPTFVS 279 (1156)
Q Consensus 207 ~~~~~~~~~~~~~~~~~~~d~r~~~~~e~l~~i~~IK~~~~e~r~-------~e~~~~~~~~~~~~~~~~~~~~~~~~~~ 279 (1156)
..+..+...+...+..+..++..+.+.|.+.|+++||.|+.+... ......++.................++.
T Consensus 169 ~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~g~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 248 (555)
T TIGR01194 169 QLLAFMGGFKFFHAARDEEDAFNEHTHAIAFGAKELKIHGIRRLSFAHGAIQESANNIADLHIIEILIFIAAENFGQLLF 248 (555)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhHHHHHhcCHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 233344455556666677778889999999999999999984111 0111111111111111100001111111
Q ss_pred HHHHHHHHHh---CCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCC---cccc--ccC--
Q 037346 280 VVTFGSCILL---GIPLESGMILSALTTFKILQEPIYYLPESISMMIQAKVPLDRIASFLCLEGLQ---TDVL--EKM-- 349 (1156)
Q Consensus 280 ~~~f~~~~~~---~~~lt~~~~ft~l~~~~~l~~pl~~l~~~~~~~~~a~~s~~Ri~~fl~~~~~~---~~~~--~~~-- 349 (1156)
.+.++.+++. .+.++.|.+++++.+...+..|+..+...+..+.++++|++||.++++.++.+ .... ...
T Consensus 249 ~~~~~~~~~~~~~~~~~t~g~l~a~~~~~~~l~~pi~~l~~~~~~~~~a~~s~~ri~~ll~~~~~~~~~~~~~~~~~~~~ 328 (555)
T TIGR01194 249 FLLIGCALFAAAMFASIDAAAISAFVLALLYIKGPLEMLVSALPILAQAQIACQRLADFGERFNEPEPELELSDADNVLL 328 (555)
T ss_pred HHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccccccccccccc
Confidence 1122222221 25789999999999999999999999999999999999999999998642111 0000 000
Q ss_pred -CCCCCCccEEEeeeEEEeCCCC--CCCccccceEEeeCCeEEEEEcCCCCChHHHHHHHhCCCCCCCcEEEEcCe----
Q 037346 350 -PRGNSDTAIEIIDGSFSWDFSS--PNPTLRNINLKVFHGMRVAVCGTVGSGKSSCLSCILGGVPKESGIIRLCGT---- 422 (1156)
Q Consensus 350 -~~~~~~~~i~~~~~~f~~~~~~--~~~~l~~i~l~i~~g~~~~ivG~~GsGKSTll~~i~g~~~~~~G~i~~~g~---- 422 (1156)
+.......|+++|++|+|+..+ ++++|+|+||++++|++++|+||||||||||+++|+|+++|++|+|.++|.
T Consensus 329 ~~~~~~~~~i~~~~v~f~y~~~~~~~~~~l~~vs~~i~~G~~~aivG~sGsGKSTl~~ll~g~~~p~~G~i~~~g~~i~~ 408 (555)
T TIGR01194 329 LAHDKSVDSIELKDVHMNPKAPEGSEGFALGPIDLRIAQGDIVFIVGENGCGKSTLAKLFCGLYIPQEGEILLDGAAVSA 408 (555)
T ss_pred cccCCCCceEEEEEEEEEeCCCCCCcCceeccceEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCC
Confidence 1111234699999999997421 236999999999999999999999999999999999999999999999983
Q ss_pred ---------EEEEecCCcCCCccHHHHhhcCCCCCHHHHHHHHHHhCCchhhhhCCCCCccccccCCCCCCHHHHHHHHH
Q 037346 423 ---------KAYVAQSPWIQSGKIEENILFGKEMDRERYERVLEACSLKKDLEVLPFGDQTIIGERGINLSGGQKQRIQI 493 (1156)
Q Consensus 423 ---------~~~v~Q~~~~~~~ti~eni~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~t~v~~~g~~LSgGqkqRi~l 493 (1156)
++||+|+|++|++|+++|+ ..+.++++.+++++.+++.+++..+|+|++|. .+||||||||++|
T Consensus 409 ~~~~~~~~~i~~v~q~~~lf~~ti~~n~--~~~~~~~~~~~~~~~~~l~~~~~~lp~g~~t~-----~~LSgGq~qRlal 481 (555)
T TIGR01194 409 DSRDDYRDLFSAIFADFHLFDDLIGPDE--GEHASLDNAQQYLQRLEIADKVKIEDGGFSTT-----TALSTGQQKRLAL 481 (555)
T ss_pred CCHHHHHhhCcEEccChhhhhhhhhccc--ccchhHHHHHHHHHHcCCchhhcccccccCCc-----ccCCHHHHHHHHH
Confidence 5899999999999999995 33456778889999999999999999999984 7899999999999
Q ss_pred HHhhccCCCeeeeeCCCCCcCHHHHHHHHHHHHh---cCCCEEEEEccCCCccccCCEEEEEeCCeEEEc
Q 037346 494 ARPLYQDADIFLLDDPFSPVDDHTGAHLFKFCWV---SSSKTVIYATHQVEFLPAADLILVIKDGKITQA 560 (1156)
Q Consensus 494 Aral~~~~~illlDep~s~lD~~~~~~i~~~~~~---~~~~tvi~vtH~~~~~~~~d~i~~l~~G~i~~~ 560 (1156)
|||++++|+++|||||||+||+++++.+.+.++. .+++|+|+|||+++.+..||+|++|++|++++.
T Consensus 482 aRall~~~~ililDE~ts~LD~~~~~~i~~~l~~~~~~~~~tiiiisH~~~~~~~~d~i~~l~~G~i~~~ 551 (555)
T TIGR01194 482 ICAWLEDRPILLFDEWAADQDPAFKRFFYEELLPDLKRQGKTIIIISHDDQYFELADQIIKLAAGCIVKD 551 (555)
T ss_pred HHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeccHHHHHhCCEEEEEECCEEEEe
Confidence 9999999999999999999999999998876532 468999999999999889999999999999864
|
This model describes cyclic peptide transporter in bacteria. Bacteria have elaborate pathways for the production of toxins and secondary metabolites. Many such compounds, including syringomycin and pyoverdine are synthesized on non-ribosomal templates consisting of a multienzyme complex. On several occasions the proteins of the complex and transporter protein are present on the same operon. Often times these compounds cross the biological membrane by specific transporters. Syringomycin is an amphipathic, cylclic lipodepsipeptide when inserted into host causes formation of channels, permeable to variety of cations. On the other hand, pyoverdine is a cyclic octa-peptidyl dihydroxyquinoline, which is efficient in sequestering iron for uptake. |
| >COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-58 Score=495.33 Aligned_cols=456 Identities=24% Similarity=0.385 Sum_probs=341.4
Q ss_pred ccEEEeeeEEEeCCC-CCCCccccceEEeeCCeEEEEEcCCCCChHHHHHHHhCCCCC-----CCcEEEEcC--------
Q 037346 356 TAIEIIDGSFSWDFS-SPNPTLRNINLKVFHGMRVAVCGTVGSGKSSCLSCILGGVPK-----ESGIIRLCG-------- 421 (1156)
Q Consensus 356 ~~i~~~~~~f~~~~~-~~~~~l~~i~l~i~~g~~~~ivG~~GsGKSTll~~i~g~~~~-----~~G~i~~~g-------- 421 (1156)
..++++|++.+|... ....+++++||+|++||.+|+||+||||||-..+.|+|+++. -+|+|.++|
T Consensus 5 ~lL~v~nLsV~f~~~~~~~~aVk~isf~i~~GEtlAlVGESGSGKSvTa~sim~LLp~~~~~~~sg~i~f~G~dll~~se 84 (534)
T COG4172 5 PLLSIRNLSVAFHQEGGTVEAVKGISFDIEAGETLALVGESGSGKSVTALSILGLLPSPAAAHPSGSILFDGEDLLAASE 84 (534)
T ss_pred cceeeeccEEEEecCCcceEeeccceeeecCCCEEEEEecCCCCccHHHHHHHHhcCCCcccCccceeEEcChhhhcCCH
Confidence 458899998887643 245789999999999999999999999999999999999985 368999988
Q ss_pred ---------eEEEEecCCcC-CC--ccHHHH----hhcCCC----CCHHHHHHHHHHhCCchhhhhCCCCCccccccCCC
Q 037346 422 ---------TKAYVAQSPWI-QS--GKIEEN----ILFGKE----MDRERYERVLEACSLKKDLEVLPFGDQTIIGERGI 481 (1156)
Q Consensus 422 ---------~~~~v~Q~~~~-~~--~ti~en----i~~~~~----~~~~~~~~~~~~~~l~~~~~~~~~g~~t~v~~~g~ 481 (1156)
+|++++|+|.- .| .||..- |...+. ..+++..+.++.+++.+--.. +...+.
T Consensus 85 ~~lr~iRG~~I~MIFQEPMtSLNPl~tIg~Qi~E~l~~Hrg~~~~~Ar~r~lelL~~VgI~~p~~r--------l~~yPH 156 (534)
T COG4172 85 RQLRGVRGNKIGMIFQEPMTSLNPLHTIGKQLAEVLRLHRGLSRAAARARALELLELVGIPEPEKR--------LDAYPH 156 (534)
T ss_pred HHHhhhcccceEEEecccccccCcHhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcCCCchhhh--------hhhCCc
Confidence 47999999963 22 355444 444332 234566778888888653221 234457
Q ss_pred CCCHHHHHHHHHHHhhccCCCeeeeeCCCCCcCHHHHHHHHHHHHh---cCCCEEEEEccCCCcccc-CCEEEEEeCCeE
Q 037346 482 NLSGGQKQRIQIARPLYQDADIFLLDDPFSPVDDHTGAHLFKFCWV---SSSKTVIYATHQVEFLPA-ADLILVIKDGKI 557 (1156)
Q Consensus 482 ~LSgGqkqRi~lAral~~~~~illlDep~s~lD~~~~~~i~~~~~~---~~~~tvi~vtH~~~~~~~-~d~i~~l~~G~i 557 (1156)
+|||||||||.||.||..+|++||-||||.|||..++.+|.+.+.. ..|..+++||||+..++. ||+|+||.+|++
T Consensus 157 eLSGGqRQRVMIAMALan~P~lLIADEPTTALDVtvQaQIL~Ll~~Lq~~~gMa~lfITHDL~iVr~~ADrV~VM~~G~i 236 (534)
T COG4172 157 ELSGGQRQRVMIAMALANEPDLLIADEPTTALDVTVQAQILDLLKELQAELGMAILFITHDLGIVRKFADRVYVMQHGEI 236 (534)
T ss_pred ccCcchhhHHHHHHHHcCCCCeEeecCCcchhhhhhHHHHHHHHHHHHHHhCcEEEEEeccHHHHHHhhhhEEEEeccEE
Confidence 9999999999999999999999999999999999999999886633 558999999999999975 999999999999
Q ss_pred EEccChHHHHhcCc-chHHHHHhhhhhccCCCCCCCCCcccccccccCCCCCCCcccchhcccccCCCCcccccCccCcc
Q 037346 558 TQAGKYSDILNSGT-DFMELVGAHKQALSGLDSIDRGPVSERKSINKENDGTSTTNEIVNKEENKNFQSDDEAALPKGQL 636 (1156)
Q Consensus 558 ~~~g~~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 636 (1156)
+|.|+.++++.... .|...+-.. . |........ + .. + .+
T Consensus 237 vE~~~t~~lF~~PqHpYTr~Ll~a------e------P~g~~~p~~--~------------------~~------~--~l 276 (534)
T COG4172 237 VETGTTETLFAAPQHPYTRKLLAA------E------PSGDPPPLP--E------------------DA------P--VL 276 (534)
T ss_pred eecCcHHHHhhCCCChHHHHHHhc------C------CCCCCCCCC--C------------------CC------C--ce
Confidence 99999999886543 233222110 0 000000000 0 00 0 00
Q ss_pred hhHHHHhcCcccHHHHHHHHHHhccchHHHHHHHHHHHHHHHHhhhhhhhhhccccccccCCCCCchhhHHHHHHHHHHH
Q 037346 637 VQEEEREKGKVGFSVYWKYMTTAYGGVLVPFILLAQIIFQIFQIGSNYWMAWATPVAKDVNPAVGASTLIIVYVGAGYKT 716 (1156)
Q Consensus 637 ~~~e~~~~g~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 716 (1156)
.+-
T Consensus 277 l~~----------------------------------------------------------------------------- 279 (534)
T COG4172 277 LEV----------------------------------------------------------------------------- 279 (534)
T ss_pred EEe-----------------------------------------------------------------------------
Confidence 000
Q ss_pred HHHHHHHHHHHhccccccccccccccchhhhhcccccccchhhhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 037346 717 ATQLFNKMHVCIFRAPMYFFDSTPSGRILNRVSENVKWADQSAADMDIPYDIGAFAFSMIQLLGIIVVMSLVAWQVLIVF 796 (1156)
Q Consensus 717 ~~~l~~~l~~~ll~~p~~ff~~~~~G~il~R~s~d~~~~d~~~~d~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~ 796 (1156)
.|+. ++. |
T Consensus 280 --------------------------------------~~v~-v~f--~------------------------------- 287 (534)
T COG4172 280 --------------------------------------EDLR-VWF--P------------------------------- 287 (534)
T ss_pred --------------------------------------cceE-EEE--e-------------------------------
Confidence 0000 000 0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHhhChHHHHHHhhccchhhhhhcchHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Q 037346 797 VPVIATFIWYQQYYITSTRELSRLIGVCKAPVIQQFSETISGSTTIRSLDQELRFRDTNMKLIDEYSRPKFHIAGAMEWL 876 (1156)
Q Consensus 797 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~e~l~Gi~tIra~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 876 (1156)
T Consensus 288 -------------------------------------------------------------------------------- 287 (534)
T COG4172 288 -------------------------------------------------------------------------------- 287 (534)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHHHHHHHHHHHHHHcCCCccchHHHHHHHhHHHHHHHHhhcCCCCCcccccCCCCCCCCCCCCeEEEEEEEEE
Q 037346 877 RFCIDMLSSITFAFSLAFLISVPNGIIHPYKNLERKIISVERILQCACIPSEPALVIEATKPNNSRPSHGEVNIRHLQVR 956 (1156)
Q Consensus 877 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~Ri~~~~~~~~e~~~~~~~~~~~~~~p~~g~I~~~~Vsf~ 956 (1156)
...+++ .+....-..+++||++
T Consensus 288 ---------------------i~~g~~-------------------------------------~r~~~~~~AVd~isl~ 309 (534)
T COG4172 288 ---------------------IKGGFL-------------------------------------RRTVDHLRAVDGISLT 309 (534)
T ss_pred ---------------------cCCccc-------------------------------------cccchheEEeccceeE
Confidence 000000 0000113478999999
Q ss_pred EcCCCCceeeCCCCCCHHHHHHHHhhcccCCCceEEEcCeeCCCCChHH---HhhcCeeecccccc-c--cccchhcc--
Q 037346 957 YAPNLPLVLRGRTGSGKSTLIQTLFRIVESTAGHILIDGKDISLIGLHD---LRTRLSIIPQDPTM-F--EGTTRSNL-- 1028 (1156)
Q Consensus 957 Y~~~~~~vL~G~SGsGKSTL~~lL~rl~~p~~G~I~idG~di~~i~~~~---LR~~i~~VpQdp~L-F--~gTIr~Nl-- 1028 (1156)
.++++.+.|+|+||||||||-.+|+|+.++. |+|.++|.||...+.++ +|+++-+|+|||+= + .-||.+=|
T Consensus 310 L~~gqTlGlVGESGSGKsTlG~allrL~~s~-G~I~F~G~~i~~~~~~~mrplR~~mQvVFQDPygSLsPRmtV~qII~E 388 (534)
T COG4172 310 LRRGQTLGLVGESGSGKSTLGLALLRLIPSQ-GEIRFDGQDIDGLSRKEMRPLRRRMQVVFQDPYGSLSPRMTVGQIIEE 388 (534)
T ss_pred ecCCCeEEEEecCCCCcchHHHHHHhhcCcC-ceEEECCccccccChhhhhhhhhhceEEEeCCCCCCCcccCHHHHhhh
Confidence 9999999999999999999999999999875 99999999999988666 67999999999971 1 12444333
Q ss_pred --CCCC-CCC----HHHHHHHHHHcCCChHHHh-hcCCcccc-------ccccccCCCEEEEecCCcCCCHHHHHHHHHH
Q 037346 1029 --DPLE-EHA----DEQIWEALDKCQLGDEVRK-KKGKLDSQ-------GRVLLKKSKVLVLDEATASVDTATDNQIQQT 1093 (1156)
Q Consensus 1029 --~~~~-~~~----deei~~al~~~~l~~~i~~-lp~gl~s~-------ARALLr~~~ILiLDEaTS~LD~~te~~I~~~ 1093 (1156)
.... ..+ |+.+.+||+.+||+..... -|..+.-+ |||++-+|++++||||||+||.--.+.|.+.
T Consensus 389 GL~vh~~~ls~~eR~~rv~~aL~EVGLDp~~r~RYPhEFSGGQRQRIAIARAliLkP~~i~LDEPTSALD~SVQaQvv~L 468 (534)
T COG4172 389 GLRVHEPKLSAAERDQRVIEALEEVGLDPATRNRYPHEFSGGQRQRIAIARALILKPELILLDEPTSALDRSVQAQVLDL 468 (534)
T ss_pred hhhhcCCCCCHHHHHHHHHHHHHHcCCChhHhhcCCcccCcchhhHHHHHHHHhcCCcEEEecCCchHhhHHHHHHHHHH
Confidence 2222 122 5679999999999876543 45555433 8999999999999999999999999999999
Q ss_pred HHHhc--CCceEEEeecCcccccc-cCEEEEEeCcEEeeecChhHHhcCCCChHHHH
Q 037346 1094 LRQHF--SDCTVVTIAHRITSVLD-SAMVLLLNHGLIKEYDSPTKLLENKSSSFAQL 1147 (1156)
Q Consensus 1094 l~~~~--~~~TvI~IaHrl~ti~~-~D~I~Vl~~G~IvE~G~~~eLl~~~~g~f~~l 1147 (1156)
++++- .+-+-++|+|+|..++. ||+|+||.+|+|||+|+-+++++++...|.+-
T Consensus 469 Lr~LQ~k~~LsYLFISHDL~VvrAl~~~viVm~~GkiVE~G~~~~if~~P~~~YT~~ 525 (534)
T COG4172 469 LRDLQQKHGLSYLFISHDLAVVRALCHRVIVMRDGKIVEQGPTEAVFANPQHEYTRA 525 (534)
T ss_pred HHHHHHHhCCeEEEEeccHHHHHHhhceEEEEeCCEEeeeCCHHHHhcCCCcHHHHH
Confidence 98764 36699999999999986 99999999999999999999999998888753
|
|
| >PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-58 Score=559.06 Aligned_cols=423 Identities=23% Similarity=0.345 Sum_probs=317.2
Q ss_pred EeeeEEEeCCCCCCCccccceEEeeCCeEEEEEcCCCCChHHHHHHHhCCCCCCCcEEEEcCe--------------EEE
Q 037346 360 IIDGSFSWDFSSPNPTLRNINLKVFHGMRVAVCGTVGSGKSSCLSCILGGVPKESGIIRLCGT--------------KAY 425 (1156)
Q Consensus 360 ~~~~~f~~~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKSTll~~i~g~~~~~~G~i~~~g~--------------~~~ 425 (1156)
++|++++|+ ++++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|+ ++|
T Consensus 1 ~~nl~~~~~---~~~il~~vs~~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~ 77 (491)
T PRK10982 1 MSNISKSFP---GVKALDNVNLKVRPHSIHALMGENGAGKSTLLKCLFGIYQKDSGSILFQGKEIDFKSSKEALENGISM 77 (491)
T ss_pred CCceEEEeC---CEEeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCceEEEECCEECCCCCHHHHHhCCEEE
Confidence 368999996 357999999999999999999999999999999999999999999999873 789
Q ss_pred EecCCcCCC-ccHHHHhhcCCC------CCH----HHHHHHHHHhCCchhhhhCCCCCccccccCCCCCCHHHHHHHHHH
Q 037346 426 VAQSPWIQS-GKIEENILFGKE------MDR----ERYERVLEACSLKKDLEVLPFGDQTIIGERGINLSGGQKQRIQIA 494 (1156)
Q Consensus 426 v~Q~~~~~~-~ti~eni~~~~~------~~~----~~~~~~~~~~~l~~~~~~~~~g~~t~v~~~g~~LSgGqkqRi~lA 494 (1156)
++|++.++. .|++||+.++.. .+. ++.+++++.+++... ......+|||||||||+||
T Consensus 78 v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-----------~~~~~~~LSgGq~qrv~lA 146 (491)
T PRK10982 78 VHQELNLVLQRSVMDNMWLGRYPTKGMFVDQDKMYRDTKAIFDELDIDID-----------PRAKVATLSVSQMQMIEIA 146 (491)
T ss_pred EecccccccCCCHHHHhhcccccccccccCHHHHHHHHHHHHHHcCCCCC-----------ccCchhhCCHHHHHHHHHH
Confidence 999997654 599999987631 121 233445555555322 2345678999999999999
Q ss_pred HhhccCCCeeeeeCCCCCcCHHHHHHHHHHHHh--cCCCEEEEEccCCCccc-cCCEEEEEeCCeEEEccChHHHHhcCc
Q 037346 495 RPLYQDADIFLLDDPFSPVDDHTGAHLFKFCWV--SSSKTVIYATHQVEFLP-AADLILVIKDGKITQAGKYSDILNSGT 571 (1156)
Q Consensus 495 ral~~~~~illlDep~s~lD~~~~~~i~~~~~~--~~~~tvi~vtH~~~~~~-~~d~i~~l~~G~i~~~g~~~~l~~~~~ 571 (1156)
|||+.+|+++||||||++||+.+.+++.+.+.. ..|+|+|++||+++.+. .||+|++|++|++++.|+.+++...
T Consensus 147 ~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tvii~tH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~-- 224 (491)
T PRK10982 147 KAFSYNAKIVIMDEPTSSLTEKEVNHLFTIIRKLKERGCGIVYISHKMEEIFQLCDEITILRDGQWIATQPLAGLTMD-- 224 (491)
T ss_pred HHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHHhCCEEEEEECCEEEeecChhhCCHH--
Confidence 999999999999999999999999999876643 45889999999999876 5999999999999988765443100
Q ss_pred chHHHHHhhhhhccCCCCCCCCCcccccccccCCCCCCCcccchhcccccCCCCcccccCccCcchhHHHHhcCcccHHH
Q 037346 572 DFMELVGAHKQALSGLDSIDRGPVSERKSINKENDGTSTTNEIVNKEENKNFQSDDEAALPKGQLVQEEEREKGKVGFSV 651 (1156)
Q Consensus 572 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~g~~~~~~ 651 (1156)
+...... .. . . . .
T Consensus 225 ---~~~~~~~----~~-~--~------------~---------------~------------------------------ 237 (491)
T PRK10982 225 ---KIIAMMV----GR-S--L------------T---------------Q------------------------------ 237 (491)
T ss_pred ---HHHHHHh----CC-C--c------------c---------------c------------------------------
Confidence 0000000 00 0 0 0 0
Q ss_pred HHHHHHHhccchHHHHHHHHHHHHHHHHhhhhhhhhhccccccccCCCCCchhhHHHHHHHHHHHHHHHHHHHHHHhccc
Q 037346 652 YWKYMTTAYGGVLVPFILLAQIIFQIFQIGSNYWMAWATPVAKDVNPAVGASTLIIVYVGAGYKTATQLFNKMHVCIFRA 731 (1156)
Q Consensus 652 ~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~ll~~ 731 (1156)
T Consensus 238 -------------------------------------------------------------------------------- 237 (491)
T PRK10982 238 -------------------------------------------------------------------------------- 237 (491)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cccccccccccchhhhhcccccccchhhhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 037346 732 PMYFFDSTPSGRILNRVSENVKWADQSAADMDIPYDIGAFAFSMIQLLGIIVVMSLVAWQVLIVFVPVIATFIWYQQYYI 811 (1156)
Q Consensus 732 p~~ff~~~~~G~il~R~s~d~~~~d~~~~d~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~ 811 (1156)
.+.. + . .
T Consensus 238 ---~~~~-~--------~-----~-------------------------------------------------------- 244 (491)
T PRK10982 238 ---RFPD-K--------E-----N-------------------------------------------------------- 244 (491)
T ss_pred ---cccc-c--------c-----C--------------------------------------------------------
Confidence 0000 0 0 0
Q ss_pred HHHHHHHHHHhHhhChHHHHHHhhccchhhhhhcchHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 037346 812 TSTRELSRLIGVCKAPVIQQFSETISGSTTIRSLDQELRFRDTNMKLIDEYSRPKFHIAGAMEWLRFCIDMLSSITFAFS 891 (1156)
Q Consensus 812 ~~~~~~~~~~~~~~s~~~~~~~e~l~Gi~tIra~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 891 (1156)
T Consensus 245 -------------------------------------------------------------------------------- 244 (491)
T PRK10982 245 -------------------------------------------------------------------------------- 244 (491)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHcCCCccchHHHHHHHhHHHHHHHHhhcCCCCCcccccCCCCCCCCCCCCeEEEEEEEEEEcCCCCceeeCCCCC
Q 037346 892 LAFLISVPNGIIHPYKNLERKIISVERILQCACIPSEPALVIEATKPNNSRPSHGEVNIRHLQVRYAPNLPLVLRGRTGS 971 (1156)
Q Consensus 892 ~~~~~~~~~~~~~~~~~~~~~~~s~~Ri~~~~~~~~e~~~~~~~~~~~~~~p~~g~I~~~~Vsf~Y~~~~~~vL~G~SGs 971 (1156)
.+.++.. +..+.... +...++||+|..++++.++|.|+|||
T Consensus 245 ---------------------------------~~~~~~i--~~~~l~~~----~~~~l~~vsl~i~~Ge~~~l~G~nGs 285 (491)
T PRK10982 245 ---------------------------------KPGEVIL--EVRNLTSL----RQPSIRDVSFDLHKGEILGIAGLVGA 285 (491)
T ss_pred ---------------------------------CCCCcEE--EEeCcccc----cCcccceeeEEEeCCcEEEEecCCCC
Confidence 0000000 00000000 01268999999999999999999999
Q ss_pred CHHHHHHHHhhcccCCCceEEEcCeeCCCCChH-HHhhcCeeeccccc---ccc-ccchhc-----cCCC----CCCC--
Q 037346 972 GKSTLIQTLFRIVESTAGHILIDGKDISLIGLH-DLRTRLSIIPQDPT---MFE-GTTRSN-----LDPL----EEHA-- 1035 (1156)
Q Consensus 972 GKSTL~~lL~rl~~p~~G~I~idG~di~~i~~~-~LR~~i~~VpQdp~---LF~-gTIr~N-----l~~~----~~~~-- 1035 (1156)
|||||+++|+|+.+|++|+|.+||.++...+.. .+|+.++|+||++. +|. .|+++| +... ...+
T Consensus 286 GKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~i~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 365 (491)
T PRK10982 286 KRTDIVETLFGIREKSAGTITLHGKKINNHNANEAINHGFALVTEERRSTGIYAYLDIGFNSLISNIRNYKNKVGLLDNS 365 (491)
T ss_pred CHHHHHHHHcCCCcCCccEEEECCEECCCCCHHHHHHCCCEEcCCchhhCCcccCCcHHHheehhhhhhhcccccccCcH
Confidence 999999999999999999999999999877654 45778999999963 555 355555 4311 1011
Q ss_pred --HHHHHHHHHHcCCC-hHHHhhcCCcccc-------ccccccCCCEEEEecCCcCCCHHHHHHHHHHHHHhc-CCceEE
Q 037346 1036 --DEQIWEALDKCQLG-DEVRKKKGKLDSQ-------GRVLLKKSKVLVLDEATASVDTATDNQIQQTLRQHF-SDCTVV 1104 (1156)
Q Consensus 1036 --deei~~al~~~~l~-~~i~~lp~gl~s~-------ARALLr~~~ILiLDEaTS~LD~~te~~I~~~l~~~~-~~~TvI 1104 (1156)
++++.++++..++. +.....|..|..+ |||++++|+||||||||++||+.+.+.|.+.|+++. +++|||
T Consensus 366 ~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~qrv~la~al~~~p~illLDEPt~gLD~~~~~~~~~~l~~l~~~~~tvi 445 (491)
T PRK10982 366 RMKSDTQWVIDSMRVKTPGHRTQIGSLSGGNQQKVIIGRWLLTQPEILMLDEPTRGIDVGAKFEIYQLIAELAKKDKGII 445 (491)
T ss_pred HHHHHHHHHHHhcCccCCCcccccccCCcHHHHHHHHHHHHhcCCCEEEEcCCCcccChhHHHHHHHHHHHHHHCCCEEE
Confidence 24567888888884 4445555555544 899999999999999999999999999999998754 478999
Q ss_pred EeecCccccc-ccCEEEEEeCcEEeeecChhHHh
Q 037346 1105 TIAHRITSVL-DSAMVLLLNHGLIKEYDSPTKLL 1137 (1156)
Q Consensus 1105 ~IaHrl~ti~-~~D~I~Vl~~G~IvE~G~~~eLl 1137 (1156)
+|||+++.+. -||||++|++|+++..++.+++.
T Consensus 446 ~vsHd~~~~~~~~d~v~~l~~g~i~~~~~~~~~~ 479 (491)
T PRK10982 446 IISSEMPELLGITDRILVMSNGLVAGIVDTKTTT 479 (491)
T ss_pred EECCChHHHHhhCCEEEEEECCEEEEEEccccCC
Confidence 9999999886 59999999999999888775433
|
|
| >PRK11819 putative ABC transporter ATP-binding protein; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-57 Score=553.79 Aligned_cols=198 Identities=27% Similarity=0.374 Sum_probs=163.0
Q ss_pred ccEEEeeeEEEeCCCCCCCccccceEEeeCCeEEEEEcCCCCChHHHHHHHhCCCCCCCcEEEEcC--eEEEEecCCcCC
Q 037346 356 TAIEIIDGSFSWDFSSPNPTLRNINLKVFHGMRVAVCGTVGSGKSSCLSCILGGVPKESGIIRLCG--TKAYVAQSPWIQ 433 (1156)
Q Consensus 356 ~~i~~~~~~f~~~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKSTll~~i~g~~~~~~G~i~~~g--~~~~v~Q~~~~~ 433 (1156)
..++++|++++|+. ++++|+|+||+|++|++++|+||||||||||+++|+|+++|++|+|.+++ .++||+|+|.++
T Consensus 5 ~~l~i~~l~~~y~~--~~~il~~vs~~i~~Ge~~~iiG~NGsGKSTLlk~i~G~~~p~~G~i~~~~~~~i~~v~Q~~~~~ 82 (556)
T PRK11819 5 YIYTMNRVSKVVPP--KKQILKDISLSFFPGAKIGVLGLNGAGKSTLLRIMAGVDKEFEGEARPAPGIKVGYLPQEPQLD 82 (556)
T ss_pred EEEEEeeEEEEeCC--CCeeeeCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEecCCCEEEEEecCCCCC
Confidence 36899999999962 35799999999999999999999999999999999999999999999874 689999999887
Q ss_pred Cc-cHHHHhhcCCC-C----------------C--------------------------HHHHHHHHHHhCCchhhhhCC
Q 037346 434 SG-KIEENILFGKE-M----------------D--------------------------RERYERVLEACSLKKDLEVLP 469 (1156)
Q Consensus 434 ~~-ti~eni~~~~~-~----------------~--------------------------~~~~~~~~~~~~l~~~~~~~~ 469 (1156)
+. |++||+.++.. + . +++..++++.+++.
T Consensus 83 ~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~------- 155 (556)
T PRK11819 83 PEKTVRENVEEGVAEVKAALDRFNEIYAAYAEPDADFDALAAEQGELQEIIDAADAWDLDSQLEIAMDALRCP------- 155 (556)
T ss_pred CCCcHHHHHHHhhHHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHHHHHHhcCccchHHHHHHHHHhCCCC-------
Confidence 64 99999987521 0 0 01111222222221
Q ss_pred CCCccccccCCCCCCHHHHHHHHHHHhhccCCCeeeeeCCCCCcCHHHHHHHHHHHHhcCCCEEEEEccCCCcccc-CCE
Q 037346 470 FGDQTIIGERGINLSGGQKQRIQIARPLYQDADIFLLDDPFSPVDDHTGAHLFKFCWVSSSKTVIYATHQVEFLPA-ADL 548 (1156)
Q Consensus 470 ~g~~t~v~~~g~~LSgGqkqRi~lAral~~~~~illlDep~s~lD~~~~~~i~~~~~~~~~~tvi~vtH~~~~~~~-~d~ 548 (1156)
.......+|||||||||+||||++.+|+++||||||++||+.+..++.+.+.... .|+|+|||+++++.. ||+
T Consensus 156 -----~~~~~~~~LSgGqkqrv~la~al~~~p~vlLLDEPt~~LD~~~~~~l~~~L~~~~-~tviiisHd~~~~~~~~d~ 229 (556)
T PRK11819 156 -----PWDAKVTKLSGGERRRVALCRLLLEKPDMLLLDEPTNHLDAESVAWLEQFLHDYP-GTVVAVTHDRYFLDNVAGW 229 (556)
T ss_pred -----cccCchhhcCHHHHHHHHHHHHHhCCCCEEEEcCCCCcCChHHHHHHHHHHHhCC-CeEEEEeCCHHHHHhhcCe
Confidence 1245567899999999999999999999999999999999999999887654443 599999999999865 999
Q ss_pred EEEEeCCeEE-EccChHHHHh
Q 037346 549 ILVIKDGKIT-QAGKYSDILN 568 (1156)
Q Consensus 549 i~~l~~G~i~-~~g~~~~l~~ 568 (1156)
|++|++|+++ +.|+++++.+
T Consensus 230 i~~l~~g~i~~~~g~~~~~~~ 250 (556)
T PRK11819 230 ILELDRGRGIPWEGNYSSWLE 250 (556)
T ss_pred EEEEeCCEEEEecCCHHHHHH
Confidence 9999999986 7898887653
|
|
| >TIGR02868 CydC thiol reductant ABC exporter, CydC subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.5e-57 Score=550.28 Aligned_cols=392 Identities=21% Similarity=0.260 Sum_probs=309.9
Q ss_pred HHHHHHHHHHHHHHHHhccccccccccccccchhhhhcccccccchhhhcccchHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 037346 712 AGYKTATQLFNKMHVCIFRAPMYFFDSTPSGRILNRVSENVKWADQSAADMDIPYDIGAFAFSMIQLLGIIVVMSLVAWQ 791 (1156)
Q Consensus 712 ~~~~~~~~l~~~l~~~ll~~p~~ff~~~~~G~il~R~s~d~~~~d~~~~d~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 791 (1156)
.+.++..++|.++++++++.|..||+++++|++++|++ .|+..++..+...+..++..++.+++.+++++..+|.
T Consensus 80 ~~~~~~~~lr~~~~~~ll~~~~~~~~~~~~g~~~~~l~-----~d~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 154 (529)
T TIGR02868 80 AALRSLGRLRVRVYDRLARLALAGRRRFQTGDLLGRLG-----ADVDALQDLYVRVIVPLVVALVVGSAAVAAIALLSVP 154 (529)
T ss_pred HHHHHHHHHHHHHHHHhhccCccccccCChhhHHHHHH-----hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Confidence 34567789999999999999999999999999999999 7777777777777777788888888888889999999
Q ss_pred HHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhHhhChHHHHHHhhccchhhhhhcchHHHHHHHHHHHHHHHhhHHHHHH
Q 037346 792 VLIVFVPVIATFIWY-QQYYITSTRELSRLIGVCKAPVIQQFSETISGSTTIRSLDQELRFRDTNMKLIDEYSRPKFHIA 870 (1156)
Q Consensus 792 l~l~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~s~~~~~~~e~l~Gi~tIra~~~e~~~~~~~~~~~~~~~~~~~~~~ 870 (1156)
++++++..++++.++ ..++.+..+...+...+..+.+.+++.|.++|+++||+|+.|+.+.+++.+..++..+......
T Consensus 155 l~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~g~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~ 234 (529)
T TIGR02868 155 AALVLAAGLLLAGFVAPLVSLRAARAAEVALARLRSQLYQQLTDALDGAADLVAYGALDPALAQVEAADRELLAAERRAA 234 (529)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHhccHHHHHHcCChHHHHHHHHHHHHHHHHHHHHHH
Confidence 987766554444333 3344444455555556677889999999999999999999999999999998888877766655
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-HHcCCC-----------------------ccchHHHHHHHhHHHHHHHHhhcCC
Q 037346 871 GAMEWLRFCIDMLSSITFAFSLAFL-ISVPNG-----------------------IIHPYKNLERKIISVERILQCACIP 926 (1156)
Q Consensus 871 ~~~~~~~~~l~~~~~~~~~~~~~~~-~~~~~~-----------------------~~~~~~~~~~~~~s~~Ri~~~~~~~ 926 (1156)
....+......++..+...++..+. .....+ .......+.....+.+|+.++.+.+
T Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~t~g~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ri~~~l~~~ 314 (529)
T TIGR02868 235 RATGLGAAAQLLAAGLAVLGALWAGGPAVADGTLAPATLAVLVLLPLAAFEAFAPLPAAAQALTRVRAAAERIEEVTGAK 314 (529)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 5444443333333222211111110 000011 1112256677888999999998776
Q ss_pred CCCcccccCCCCCCCCCCCCeEEEEEEEEEEcCCC--------------CceeeCCCCCCHHHHHHHHhhcccCCCceEE
Q 037346 927 SEPALVIEATKPNNSRPSHGEVNIRHLQVRYAPNL--------------PLVLRGRTGSGKSTLIQTLFRIVESTAGHIL 992 (1156)
Q Consensus 927 ~e~~~~~~~~~~~~~~p~~g~I~~~~Vsf~Y~~~~--------------~~vL~G~SGsGKSTL~~lL~rl~~p~~G~I~ 992 (1156)
++.+.. +...+...++..+.|+|+||+|+|+++. .++|+||||||||||+++|+|+|+|++|+|.
T Consensus 315 ~~~~~~-~~~~~~~~~~~~~~I~~~~vsf~Y~~~~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~ 393 (529)
T TIGR02868 315 GPRPEG-VVPAAGALGLGKPTLELRDLSFGYPGSPPVLDGVSLDLPPGERVAILGPSGSGKSTLLMLLTGLLDPLQGEVT 393 (529)
T ss_pred CCcCCC-CCCCCcccCCCCceEEEEEEEEecCCCCceeecceEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEE
Confidence 553211 1111111234457899999999996432 3467799999999999999999999999999
Q ss_pred EcCeeCCCCChHHHhhcCeeeccccccccccchhccCCCC-CCCHHHHHHHHHHcCCChHHHhhcCCcccc---------
Q 037346 993 IDGKDISLIGLHDLRTRLSIIPQDPTMFEGTTRSNLDPLE-EHADEQIWEALDKCQLGDEVRKKKGKLDSQ--------- 1062 (1156)
Q Consensus 993 idG~di~~i~~~~LR~~i~~VpQdp~LF~gTIr~Nl~~~~-~~~deei~~al~~~~l~~~i~~lp~gl~s~--------- 1062 (1156)
+||+|++++ .+++|++|+||||||+||+|||||||.+++ +.+||++++|++.|++++++.++|+||||.
T Consensus 394 i~g~~i~~~-~~~lr~~i~~V~Q~~~lF~~TI~eNI~~g~~~~~~e~i~~al~~a~l~~~i~~lp~GldT~ige~G~~LS 472 (529)
T TIGR02868 394 LDGVSVSSL-QDELRRRISVFAQDAHLFDTTVRDNLRLGRPDATDEELWAALERVGLADWLRSLPDGLDTVLGEGGARLS 472 (529)
T ss_pred ECCEEhhhH-HHHHHhheEEEccCcccccccHHHHHhccCCCCCHHHHHHHHHHcCCHHHHHhCcccccchhccccCcCC
Confidence 999999999 999999999999999999999999999975 468999999999999999999999999975
Q ss_pred ---------ccccccCCCEEEEecCCcCCCHHHHHHHHHHHHHhcCCceEEEeecCc
Q 037346 1063 ---------GRVLLKKSKVLVLDEATASVDTATDNQIQQTLRQHFSDCTVVTIAHRI 1110 (1156)
Q Consensus 1063 ---------ARALLr~~~ILiLDEaTS~LD~~te~~I~~~l~~~~~~~TvI~IaHrl 1110 (1156)
|||++++|+|||||||||+||++||+.|++.|++..+++|+|+||||+
T Consensus 473 GGQrQRiaiARall~~~~iliLDE~TSaLD~~te~~I~~~l~~~~~~~TvIiItHrl 529 (529)
T TIGR02868 473 GGERQRLALARALLADAPILLLDEPTEHLDAGTESELLEDLLAALSGKTVVVITHHL 529 (529)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHhcCCCEEEEEecCC
Confidence 899999999999999999999999999999999988999999999996
|
The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex. |
| >TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-56 Score=548.35 Aligned_cols=206 Identities=26% Similarity=0.352 Sum_probs=166.7
Q ss_pred cEEEeeeEEEeCCCCCCCccccceEEeeCCeEEEEEcCCCCChHHHHHHHhCCCCCCCcEEEEcC--eEEEEecCCcCCC
Q 037346 357 AIEIIDGSFSWDFSSPNPTLRNINLKVFHGMRVAVCGTVGSGKSSCLSCILGGVPKESGIIRLCG--TKAYVAQSPWIQS 434 (1156)
Q Consensus 357 ~i~~~~~~f~~~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKSTll~~i~g~~~~~~G~i~~~g--~~~~v~Q~~~~~~ 434 (1156)
.++++|++++|+. ++++|+|+||+|++|++++|+||||||||||+++|+|+++|++|+|.+++ .++|++|+|+++.
T Consensus 4 ~i~~~nls~~~~~--~~~il~~is~~i~~Ge~~~liG~NGsGKSTLl~~i~G~~~p~~G~i~~~~~~~i~~v~Q~~~~~~ 81 (552)
T TIGR03719 4 IYTMNRVSKVVPP--KKEILKDISLSFFPGAKIGVLGLNGAGKSTLLRIMAGVDKEFNGEARPAPGIKVGYLPQEPQLDP 81 (552)
T ss_pred EEEEeeEEEecCC--CCeeecCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEecCCCEEEEEeccCCCCC
Confidence 5899999999962 35799999999999999999999999999999999999999999999975 6999999998875
Q ss_pred -ccHHHHhhcCCC-------------------CC--------HHHHHHHHHHhCCch-------hhhhCCCCCccccccC
Q 037346 435 -GKIEENILFGKE-------------------MD--------RERYERVLEACSLKK-------DLEVLPFGDQTIIGER 479 (1156)
Q Consensus 435 -~ti~eni~~~~~-------------------~~--------~~~~~~~~~~~~l~~-------~~~~~~~g~~t~v~~~ 479 (1156)
.|++||+.++.. .+ ..++.++++.++..+ .++.+ |.. .....
T Consensus 82 ~~tv~e~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~--~l~-~~~~~ 158 (552)
T TIGR03719 82 TKTVRENVEEGVAEIKDALDRFNEISAKFAEPDADMDALLAEQAELQEIIDAADAWDLDRKLEIAMDAL--RCP-PWDAD 158 (552)
T ss_pred CCcHHHHHHHhhHHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHHHHHHhcCcchhHHHHHHHHhhC--CCC-cccCc
Confidence 599999987531 01 012333444444321 12222 111 12456
Q ss_pred CCCCCHHHHHHHHHHHhhccCCCeeeeeCCCCCcCHHHHHHHHHHHHhcCCCEEEEEccCCCcccc-CCEEEEEeCCeEE
Q 037346 480 GINLSGGQKQRIQIARPLYQDADIFLLDDPFSPVDDHTGAHLFKFCWVSSSKTVIYATHQVEFLPA-ADLILVIKDGKIT 558 (1156)
Q Consensus 480 g~~LSgGqkqRi~lAral~~~~~illlDep~s~lD~~~~~~i~~~~~~~~~~tvi~vtH~~~~~~~-~d~i~~l~~G~i~ 558 (1156)
..+||||||||++||||++.+|++|||||||++||+.+.+++.+.+... +.|+|+|||+++.+.. ||+|++|++|+++
T Consensus 159 ~~~LSgGqkqrv~la~al~~~p~lLLLDEPt~~LD~~~~~~l~~~L~~~-~~tvIiisHd~~~~~~~~d~v~~l~~g~i~ 237 (552)
T TIGR03719 159 VTKLSGGERRRVALCRLLLSKPDMLLLDEPTNHLDAESVAWLEQHLQEY-PGTVVAVTHDRYFLDNVAGWILELDRGRGI 237 (552)
T ss_pred hhhcCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCChHHHHHHHHHHHhC-CCeEEEEeCCHHHHHhhcCeEEEEECCEEE
Confidence 7899999999999999999999999999999999999999988765444 4699999999999875 9999999999975
Q ss_pred -EccChHHHHh
Q 037346 559 -QAGKYSDILN 568 (1156)
Q Consensus 559 -~~g~~~~l~~ 568 (1156)
+.|+++++.+
T Consensus 238 ~~~g~~~~~~~ 248 (552)
T TIGR03719 238 PWEGNYSSWLE 248 (552)
T ss_pred EecCCHHHHHH
Confidence 7798887654
|
Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown. |
| >COG4618 ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-55 Score=489.15 Aligned_cols=490 Identities=22% Similarity=0.306 Sum_probs=375.5
Q ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcccc-hhhHH---------HHHHHHHHHHHHH
Q 037346 68 ALRLAKVLFFSAWQEILFIAILALLYTLATYVGPYLIDNFVQYLNGRQAFEY-EGYVL---------CLSERHWFFQVQQ 137 (1156)
Q Consensus 68 ~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~p~ll~~~i~~~~~~~~~~~-~g~~l---------~~~~~~~~~~~~~ 137 (1156)
......+....++..++..++++.+-.++.+..|+++-++-|-+....+... .++.+ .++...-.+...|
T Consensus 10 ~~~~~~a~l~~~r~a~~~v~lfS~~INiL~L~~~lyMLQVyDRVL~S~s~~TLv~Ltvlal~ly~~~glLd~iR~~~l~R 89 (580)
T COG4618 10 PKNLLAAVLAANRRAFIGVGLFSAVINLLALTGPLYMLQVYDRVLPSRSVPTLVMLTVLALGLYAFQGLLDAIRSRVLVR 89 (580)
T ss_pred CCchhHHHHHhhhhHHHHHHHHHHHHHHHHHhhhHHHHHHHhhhccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456667777888889999999999999999999999998887765443221 11111 1111222234578
Q ss_pred HHHHHHHHHHHHHHHHHhcCCccccCCCCHHHHHHHHHHHHHH------------------------HHHHHHHHHHHHH
Q 037346 138 FGIRFRATLFAMIYNKGLTLSGQAKQGNTSGEIINLIAVDAER------------------------ALLILYKKLGLAS 193 (1156)
Q Consensus 138 ~~~~~r~~l~~~i~~k~l~l~~~~~~~~~~g~i~nl~s~D~~~------------------------~~~ll~~~lg~~~ 193 (1156)
++.++-..+...+|.-.++.+..........+.+ .|.+. .++++.-.+|+.+
T Consensus 90 ig~~lD~~L~~~v~~a~~~~~l~~~~~g~~~Q~L----rDL~qvR~Fltg~g~~A~fDaPW~P~yl~v~fl~Hp~lG~~a 165 (580)
T COG4618 90 IGERLDRQLNGPVFAASFSAPLLRRGSGDGLQPL----RDLDQVRQFLTGTGLTAFFDAPWMPLYLAVIFLFHPWLGLIA 165 (580)
T ss_pred HHHHHHHHhccHHHHHHHhhHHhhcCCCccccch----hhHHHHHHHHcCCCcchhcCCchHHHHHHHHHHHHHHHHHHH
Confidence 8888888888888888864443221111111222 23322 2234445667777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH--HHHH----HHHHHHHHHH---HH
Q 037346 194 IATLLATAIVMLANFPLGRLREKFQDKFMETKDRRIKATSEILRNMRILKLQGWE--LKKN----ETAWLKKSVY---TE 264 (1156)
Q Consensus 194 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~r~~~~~e~l~~i~~IK~~~~e--~r~~----e~~~~~~~~~---~~ 264 (1156)
++|.++++++..++-.. .++-.++-.+..-+|....+-...|..+|+.+|.. .++. ..+++..... ..
T Consensus 166 ~~ga~iLv~la~ln~~~---t~~p~~eA~~~~~~~~~~~~a~~RNAEvi~AMGM~~~l~~rW~~~~~~~L~~~~~asd~~ 242 (580)
T COG4618 166 LAGAIILVVLALLNERA---TRKPLKEASEASIRANQLADATLRNAEVIEAMGMLGNLAKRWGRFNAAYLSAQERASDRN 242 (580)
T ss_pred HHHHHHHHHHHHHHHHH---hhccHHHHHHHHHHHHHHHHHHhhhHHHHHHhcccHHHHHHHHHHHHHHHHHHHHhHHHH
Confidence 77766655555555443 34444555667777888889999999999988865 1111 1112221111 11
Q ss_pred HHHHHHHHHHH--HHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCC
Q 037346 265 AMISFFCWGAP--TFVSVVTFGSCILLGIPLESGMILSALTTFKILQEPIYYLPESISMMIQAKVPLDRIASFLCLEGLQ 342 (1156)
Q Consensus 265 ~~~~~~~~~~~--~~~~~~~f~~~~~~~~~lt~~~~ft~l~~~~~l~~pl~~l~~~~~~~~~a~~s~~Ri~~fl~~~~~~ 342 (1156)
.......-..- .-..+...|.|++..+.+|+|.+++.-.+..-...|+-.....+..+..++.|++|+.++|...+..
T Consensus 243 ~~~~~~Sr~~Rm~lQs~iLg~GA~Lvi~ge~t~G~mIA~SIl~gRaLaPid~aI~~Wkq~~~Ar~s~~Rl~~lL~~~p~~ 322 (580)
T COG4618 243 GAFGALSRALRMALQSAVLGLGAWLVIKGEITPGMMIAGSILSGRALAPIDLAIANWKQFVAARQSYKRLNELLAELPAA 322 (580)
T ss_pred HHHHHHHHHHHHHHHHHHHhcceeeEEcCcCCcchhhHHHHHhhhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHhCccc
Confidence 11111111111 1233556788888999999999999988888888999999999999999999999999999764332
Q ss_pred ccccccCCCCCCCccEEEeeeEEEeCCCCCCCccccceEEeeCCeEEEEEcCCCCChHHHHHHHhCCCCCCCcEEEEcC-
Q 037346 343 TDVLEKMPRGNSDTAIEIIDGSFSWDFSSPNPTLRNINLKVFHGMRVAVCGTVGSGKSSCLSCILGGVPKESGIIRLCG- 421 (1156)
Q Consensus 343 ~~~~~~~~~~~~~~~i~~~~~~f~~~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKSTll~~i~g~~~~~~G~i~~~g- 421 (1156)
. +..+...+++.+.++++++.-|. .++++++|+||++++||.++||||||||||||.++|.|..+|.+|.|++||
T Consensus 323 ~---~~m~LP~P~g~L~Ve~l~~~PPg-~~~pil~~isF~l~~G~~lgIIGPSgSGKSTLaR~lvG~w~p~~G~VRLDga 398 (580)
T COG4618 323 A---ERMPLPAPQGALSVERLTAAPPG-QKKPILKGISFALQAGEALGIIGPSGSGKSTLARLLVGIWPPTSGSVRLDGA 398 (580)
T ss_pred c---CCCCCCCCCceeeEeeeeecCCC-CCCcceecceeEecCCceEEEECCCCccHHHHHHHHHcccccCCCcEEecch
Confidence 2 22344456678999999997764 457999999999999999999999999999999999999999999999998
Q ss_pred ------------eEEEEecCCcCCCccHHHHhh-cCCCCCHHHHHHHHHHhCCchhhhhCCCCCccccccCCCCCCHHHH
Q 037346 422 ------------TKAYVAQSPWIQSGKIEENIL-FGKEMDRERYERVLEACSLKKDLEVLPFGDQTIIGERGINLSGGQK 488 (1156)
Q Consensus 422 ------------~~~~v~Q~~~~~~~ti~eni~-~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~t~v~~~g~~LSgGqk 488 (1156)
+|||.||+-.+|+|||.|||. |+.+.|.+++-++.+.++.++.+..+|+||||.||+.|..||||||
T Consensus 399 ~l~qWd~e~lG~hiGYLPQdVeLF~GTIaeNIaRf~~~~d~~kIieAA~lAgvHelIl~lP~GYdT~iG~~G~~LSgGQR 478 (580)
T COG4618 399 DLRQWDREQLGRHIGYLPQDVELFDGTIAENIARFGEEADPEKVIEAARLAGVHELILRLPQGYDTRIGEGGATLSGGQR 478 (580)
T ss_pred hhhcCCHHHhccccCcCcccceecCCcHHHHHHhccccCCHHHHHHHHHHcChHHHHHhCcCCccCccCCCCCCCCchHH
Confidence 589999999999999999996 7878899999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhccCCCeeeeeCCCCCcCHHHHHHHHHHHHh--cCCCEEEEEccCCCccccCCEEEEEeCCeEEEccChHHH
Q 037346 489 QRIQIARPLYQDADIFLLDDPFSPVDDHTGAHLFKFCWV--SSSKTVIYATHQVEFLPAADLILVIKDGKITQAGKYSDI 566 (1156)
Q Consensus 489 qRi~lAral~~~~~illlDep~s~lD~~~~~~i~~~~~~--~~~~tvi~vtH~~~~~~~~d~i~~l~~G~i~~~g~~~~l 566 (1156)
|||+||||+|.||.+++||||-|+||.+.+..+.+.+.. .+|.|+|+|||+++.+..+|+|++|++|++...|+.+|+
T Consensus 479 QRIaLARAlYG~P~lvVLDEPNsNLD~~GE~AL~~Ai~~~k~rG~~vvviaHRPs~L~~~Dkilvl~~G~~~~FG~r~eV 558 (580)
T COG4618 479 QRIALARALYGDPFLVVLDEPNSNLDSEGEAALAAAILAAKARGGTVVVIAHRPSALASVDKILVLQDGRIAAFGPREEV 558 (580)
T ss_pred HHHHHHHHHcCCCcEEEecCCCCCcchhHHHHHHHHHHHHHHcCCEEEEEecCHHHHhhcceeeeecCChHHhcCCHHHH
Confidence 999999999999999999999999999999999887654 678999999999999999999999999999999999988
Q ss_pred Hh
Q 037346 567 LN 568 (1156)
Q Consensus 567 ~~ 568 (1156)
+.
T Consensus 559 La 560 (580)
T COG4618 559 LA 560 (580)
T ss_pred HH
Confidence 75
|
|
| >TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-56 Score=590.82 Aligned_cols=188 Identities=21% Similarity=0.220 Sum_probs=155.9
Q ss_pred CCccccceEEeeCCeEEEEEcCCCCChHHHHHHHhCCC----CCCCcEEEEcCe------------EEEEecCCcCCC-c
Q 037346 373 NPTLRNINLKVFHGMRVAVCGTVGSGKSSCLSCILGGV----PKESGIIRLCGT------------KAYVAQSPWIQS-G 435 (1156)
Q Consensus 373 ~~~l~~i~l~i~~g~~~~ivG~~GsGKSTll~~i~g~~----~~~~G~i~~~g~------------~~~v~Q~~~~~~-~ 435 (1156)
+++|+|+|+++++||+++|+|||||||||||++|+|.. +|.+|+|.++|. ++|++|++.++. .
T Consensus 74 ~~iL~~vs~~i~~Ge~~aIlG~nGsGKSTLLk~LaG~~~~~~~~~~G~I~~~G~~~~~~~~~~r~~i~yv~Q~d~~~~~l 153 (1394)
T TIGR00956 74 FDILKPMDGLIKPGELTVVLGRPGSGCSTLLKTIASNTDGFHIGVEGVITYDGITPEEIKKHYRGDVVYNAETDVHFPHL 153 (1394)
T ss_pred ceeeeCCEEEEECCEEEEEECCCCCCHHHHHHHHhCCCCCCCCCceeEEEECCEehHHHHhhcCceeEEeccccccCCCC
Confidence 56999999999999999999999999999999999986 578999999883 799999987665 5
Q ss_pred cHHHHhhcCCC----------CCHHH-----HHHHHHHhCCchhhhhCCCCCcccccc-CCCCCCHHHHHHHHHHHhhcc
Q 037346 436 KIEENILFGKE----------MDRER-----YERVLEACSLKKDLEVLPFGDQTIIGE-RGINLSGGQKQRIQIARPLYQ 499 (1156)
Q Consensus 436 ti~eni~~~~~----------~~~~~-----~~~~~~~~~l~~~~~~~~~g~~t~v~~-~g~~LSgGqkqRi~lAral~~ 499 (1156)
||+||+.|+.. .+++. .+.+++..+|.+ -.+|.+|+ ....|||||||||+|||||+.
T Consensus 154 TV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~-------~~~t~vg~~~~~~LSGGerkRvsIA~aL~~ 226 (1394)
T TIGR00956 154 TVGETLDFAARCKTPQNRPDGVSREEYAKHIADVYMATYGLSH-------TRNTKVGNDFVRGVSGGERKRVSIAEASLG 226 (1394)
T ss_pred CHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHHHHHHcCccc-------ccCceeCCCcCCCCCcccchHHHHHHHHHh
Confidence 99999988521 22222 133556666643 23566654 457899999999999999999
Q ss_pred CCCeeeeeCCCCCcCHHHHHHHHHHHHh---cCCCEEEEEccCCC-cc-ccCCEEEEEeCCeEEEccChHHHH
Q 037346 500 DADIFLLDDPFSPVDDHTGAHLFKFCWV---SSSKTVIYATHQVE-FL-PAADLILVIKDGKITQAGKYSDIL 567 (1156)
Q Consensus 500 ~~~illlDep~s~lD~~~~~~i~~~~~~---~~~~tvi~vtH~~~-~~-~~~d~i~~l~~G~i~~~g~~~~l~ 567 (1156)
+|++++|||||++||+.++..+.+.+.. ..|+|+|+++|++. .+ ..+|+|++|++|++++.|+.+++.
T Consensus 227 ~p~vlllDEPTsgLD~~~~~~i~~~L~~la~~~g~tvii~~Hq~~~~i~~l~D~v~~L~~G~iv~~G~~~~~~ 299 (1394)
T TIGR00956 227 GAKIQCWDNATRGLDSATALEFIRALKTSANILDTTPLVAIYQCSQDAYELFDKVIVLYEGYQIYFGPADKAK 299 (1394)
T ss_pred CCCEEEEeCCCCCcCHHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHHHHhhceEEEEeCCeEEEECCHHHHH
Confidence 9999999999999999999998886644 24899999999974 45 469999999999999999998774
|
|
| >TIGR01257 rim_protein retinal-specific rim ABC transporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=7e-55 Score=571.31 Aligned_cols=201 Identities=24% Similarity=0.377 Sum_probs=174.2
Q ss_pred ccEEEeeeEEEeCCCCCCCccccceEEeeCCeEEEEEcCCCCChHHHHHHHhCCCCCCCcEEEEcCe------------E
Q 037346 356 TAIEIIDGSFSWDFSSPNPTLRNINLKVFHGMRVAVCGTVGSGKSSCLSCILGGVPKESGIIRLCGT------------K 423 (1156)
Q Consensus 356 ~~i~~~~~~f~~~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKSTll~~i~g~~~~~~G~i~~~g~------------~ 423 (1156)
..|+++|+++.|+. +++++++|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|. +
T Consensus 927 ~~L~I~nLsK~y~~-~~k~aL~~lsl~I~~Gei~aLLG~NGAGKSTLLkiLaGLl~PtsG~I~i~G~dI~~~~~~~r~~I 1005 (2272)
T TIGR01257 927 PGVCVKNLVKIFEP-SGRPAVDRLNITFYENQITAFLGHNGAGKTTTLSILTGLLPPTSGTVLVGGKDIETNLDAVRQSL 1005 (2272)
T ss_pred ceEEEEeEEEEecC-CCceEEEeeEEEEcCCcEEEEECCCCChHHHHHHHHhcCCCCCceEEEECCEECcchHHHHhhcE
Confidence 36999999999953 2467999999999999999999999999999999999999999999999983 6
Q ss_pred EEEecCCcCCC-ccHHHHhhcCCC---CC----HHHHHHHHHHhCCchhhhhCCCCCccccccCCCCCCHHHHHHHHHHH
Q 037346 424 AYVAQSPWIQS-GKIEENILFGKE---MD----RERYERVLEACSLKKDLEVLPFGDQTIIGERGINLSGGQKQRIQIAR 495 (1156)
Q Consensus 424 ~~v~Q~~~~~~-~ti~eni~~~~~---~~----~~~~~~~~~~~~l~~~~~~~~~g~~t~v~~~g~~LSgGqkqRi~lAr 495 (1156)
|||||++.+++ .|++||+.|+.. .. +++.++.++.++|.+.. .+...+||||||||++|||
T Consensus 1006 G~~pQ~~~L~~~LTV~E~L~f~~~lkg~~~~~~~~~v~~lL~~vgL~~~~-----------~~~~~~LSGGqKQRLsLAr 1074 (2272)
T TIGR01257 1006 GMCPQHNILFHHLTVAEHILFYAQLKGRSWEEAQLEMEAMLEDTGLHHKR-----------NEEAQDLSGGMQRKLSVAI 1074 (2272)
T ss_pred EEEecCCcCCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchhh-----------cCChhhCCHHHHHHHHHHH
Confidence 99999998876 599999987421 11 23456677777775443 3455789999999999999
Q ss_pred hhccCCCeeeeeCCCCCcCHHHHHHHHHHHHh-cCCCEEEEEccCCCccc-cCCEEEEEeCCeEEEccChHHHHh
Q 037346 496 PLYQDADIFLLDDPFSPVDDHTGAHLFKFCWV-SSSKTVIYATHQVEFLP-AADLILVIKDGKITQAGKYSDILN 568 (1156)
Q Consensus 496 al~~~~~illlDep~s~lD~~~~~~i~~~~~~-~~~~tvi~vtH~~~~~~-~~d~i~~l~~G~i~~~g~~~~l~~ 568 (1156)
||+.+|+++||||||++||+.+++.+++.+.+ .+|+|+|++||+++.+. .||+|++|++|+++..|+.+++.+
T Consensus 1075 ALi~~PkVLLLDEPTSGLDp~sr~~l~~lL~~l~~g~TIIltTHdmdea~~laDrI~iL~~GkL~~~Gs~~~Lk~ 1149 (2272)
T TIGR01257 1075 AFVGDAKVVVLDEPTSGVDPYSRRSIWDLLLKYRSGRTIIMSTHHMDEADLLGDRIAIISQGRLYCSGTPLFLKN 1149 (2272)
T ss_pred HHHcCCCEEEEECCCcCCCHHHHHHHHHHHHHHhCCCEEEEEECCHHHHHHhCCEEEEEECCEEEEecCHHHHHH
Confidence 99999999999999999999999999887654 45899999999999986 599999999999999999998864
|
This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease. |
| >PRK10636 putative ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7e-56 Score=547.72 Aligned_cols=196 Identities=23% Similarity=0.311 Sum_probs=156.9
Q ss_pred EEEeeeEEEeCCCCCCCccccceEEeeCCeEEEEEcCCCCChHHHHHHHhCCCCCCCcEEEEcC--eEEEEecCCcCCCc
Q 037346 358 IEIIDGSFSWDFSSPNPTLRNINLKVFHGMRVAVCGTVGSGKSSCLSCILGGVPKESGIIRLCG--TKAYVAQSPWIQSG 435 (1156)
Q Consensus 358 i~~~~~~f~~~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKSTll~~i~g~~~~~~G~i~~~g--~~~~v~Q~~~~~~~ 435 (1156)
|.++|++++|+ ++++|+|+||+|++|++++|+||||||||||+++|+|+++|++|+|.++| .++|++|++..+..
T Consensus 2 i~i~nls~~~g---~~~~l~~vs~~i~~Ge~v~LvG~NGsGKSTLLkiL~G~~~pd~G~I~~~~~~~i~~~~q~~~~~~~ 78 (638)
T PRK10636 2 IVFSSLQIRRG---VRVLLDNATATINPGQKVGLVGKNGCGKSTLLALLKNEISADGGSYTFPGNWQLAWVNQETPALPQ 78 (638)
T ss_pred EEEEEEEEEeC---CceeecCcEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEecCCCEEEEEecCCCCCCC
Confidence 78999999996 45799999999999999999999999999999999999999999999987 47999997644444
Q ss_pred cHHHHhhcCC----------------------------------CCCHHHHHHHHHHhCCchhhhhCCCCCccccccCCC
Q 037346 436 KIEENILFGK----------------------------------EMDRERYERVLEACSLKKDLEVLPFGDQTIIGERGI 481 (1156)
Q Consensus 436 ti~eni~~~~----------------------------------~~~~~~~~~~~~~~~l~~~~~~~~~g~~t~v~~~g~ 481 (1156)
|+.+++.-+. ...+.+..++++.+++.. ........
T Consensus 79 ~~~~~v~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~lgl~~----------~~~~~~~~ 148 (638)
T PRK10636 79 PALEYVIDGDREYRQLEAQLHDANERNDGHAIATIHGKLDAIDAWTIRSRAASLLHGLGFSN----------EQLERPVS 148 (638)
T ss_pred CHHHHHHHhhHHHHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCcchHHHHHHHHHhCCCCc----------hhhcCchh
Confidence 5555443110 001123333444444421 11234567
Q ss_pred CCCHHHHHHHHHHHhhccCCCeeeeeCCCCCcCHHHHHHHHHHHHhcCCCEEEEEccCCCcccc-CCEEEEEeCCeEE-E
Q 037346 482 NLSGGQKQRIQIARPLYQDADIFLLDDPFSPVDDHTGAHLFKFCWVSSSKTVIYATHQVEFLPA-ADLILVIKDGKIT-Q 559 (1156)
Q Consensus 482 ~LSgGqkqRi~lAral~~~~~illlDep~s~lD~~~~~~i~~~~~~~~~~tvi~vtH~~~~~~~-~d~i~~l~~G~i~-~ 559 (1156)
+|||||||||+|||||+.+|++|||||||++||+.+..++.+.+... +.|+|+||||++++.. ||+|++|++|++. +
T Consensus 149 ~LSgGerqRv~LA~aL~~~P~lLLLDEPtn~LD~~~~~~L~~~L~~~-~~tviivsHd~~~l~~~~d~i~~L~~G~i~~~ 227 (638)
T PRK10636 149 DFSGGWRMRLNLAQALICRSDLLLLDEPTNHLDLDAVIWLEKWLKSY-QGTLILISHDRDFLDPIVDKIIHIEQQSLFEY 227 (638)
T ss_pred hcCHHHHHHHHHHHHHccCCCEEEEcCCCCcCCHHHHHHHHHHHHhC-CCeEEEEeCCHHHHHHhcCEEEEEeCCEEEEe
Confidence 89999999999999999999999999999999999999987765433 5799999999999864 9999999999996 6
Q ss_pred ccChHHHH
Q 037346 560 AGKYSDIL 567 (1156)
Q Consensus 560 ~g~~~~l~ 567 (1156)
.|+++.+.
T Consensus 228 ~g~~~~~~ 235 (638)
T PRK10636 228 TGNYSSFE 235 (638)
T ss_pred cCCHHHHH
Confidence 78887765
|
|
| >TIGR02857 CydD thiol reductant ABC exporter, CydD subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-55 Score=537.49 Aligned_cols=401 Identities=18% Similarity=0.282 Sum_probs=315.9
Q ss_pred HHHHHHHHHHHHHHHHhccccccccccccccchhhhhcccccccchhhhcccchHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 037346 712 AGYKTATQLFNKMHVCIFRAPMYFFDSTPSGRILNRVSENVKWADQSAADMDIPYDIGAFAFSMIQLLGIIVVMSLVAWQ 791 (1156)
Q Consensus 712 ~~~~~~~~l~~~l~~~ll~~p~~ff~~~~~G~il~R~s~d~~~~d~~~~d~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 791 (1156)
.+.+...++|.++++++++.|..||+++++|++++|++ .|+..++..+...+..++..++.+++.+++++.++|+
T Consensus 71 ~~~~~~~~lr~~l~~~l~~~~~~~~~~~~~g~~~~~l~-----~di~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 145 (529)
T TIGR02857 71 AAAAVKSQLRERLLAAVAALGPGWLQGRPSGELATLAL-----EGVEALDGYFARYLPQLVLAVIIPLAILAAVFPADWI 145 (529)
T ss_pred HHHHHHHHHHHHHHHHHHhCCchhhccCChHHHHHHHH-----hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Confidence 45678889999999999999999999999999999999 7777777666666667777777777788888888998
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhChHHHHHHhhccchhhhhhcchHHHHHHHHHHHHHHHhhHHHHHHH
Q 037346 792 VLIVFVPVIATFIWYQQYYITSTRELSRLIGVCKAPVIQQFSETISGSTTIRSLDQELRFRDTNMKLIDEYSRPKFHIAG 871 (1156)
Q Consensus 792 l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~e~l~Gi~tIra~~~e~~~~~~~~~~~~~~~~~~~~~~~ 871 (1156)
++++++..+++..++...+.+..+...+......+...+.+.|+++|+++||+|+.|+++.+++.+..++..+.......
T Consensus 146 l~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~ 225 (529)
T TIGR02857 146 SGLILLLTAPLIPIFMILIGWAAQAAARKQWAALSRLSGHFLDRLRGLPTLKLFGRAKAQAAAIARSSEEYRERTMRVLR 225 (529)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHH
Confidence 87665554444444444445555555555566677889999999999999999999999999999888877766655544
Q ss_pred HHHHHHHHHHHHHHHHHHHH---HHHHH---------------------HcCCCccchHHHHHHHhHHHHHHHHhhcCCC
Q 037346 872 AMEWLRFCIDMLSSITFAFS---LAFLI---------------------SVPNGIIHPYKNLERKIISVERILQCACIPS 927 (1156)
Q Consensus 872 ~~~~~~~~l~~~~~~~~~~~---~~~~~---------------------~~~~~~~~~~~~~~~~~~s~~Ri~~~~~~~~ 927 (1156)
...+......++..+...+. ..+.+ .+..........+.....+.+|+.++.+.++
T Consensus 226 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~t~g~~~~~~~~~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~ll~~~~ 305 (529)
T TIGR02857 226 IAFLSSAVLELFATLSVALVAVYIGFRLLAGDLDLATGLFVLLLAPEFYLPLRQLGADYHARADGVAAAEALFAVLDAPR 305 (529)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCc
Confidence 44444333333222211111 00000 0001111123566778889999999987543
Q ss_pred CCcccccCCCCCCCCCCCCeEEEEEEEEEEcCCC---------------CceeeCCCCCCHHHHHHHHhhcccCCCceEE
Q 037346 928 EPALVIEATKPNNSRPSHGEVNIRHLQVRYAPNL---------------PLVLRGRTGSGKSTLIQTLFRIVESTAGHIL 992 (1156)
Q Consensus 928 e~~~~~~~~~~~~~~p~~g~I~~~~Vsf~Y~~~~---------------~~vL~G~SGsGKSTL~~lL~rl~~p~~G~I~ 992 (1156)
+... .. +...+..+.|+|+||+|+|+++. .++|+|+||||||||+++|+|+|+|++|+|.
T Consensus 306 ~~~~----~~-~~~~~~~~~i~~~~v~f~y~~~~~~il~~i~l~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~I~ 380 (529)
T TIGR02857 306 PLAG----KA-PVTAAPAPSLEFSGLSVAYPGRRAPALRPVSFTVPPGERVALVGPSGAGKSTLLNLLLGFVDPTEGSIA 380 (529)
T ss_pred ccCC----Cc-CCCCCCCCeEEEEEEEEECCCCCcccccceeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEE
Confidence 3211 11 11122246799999999996433 2456699999999999999999999999999
Q ss_pred EcCeeCCCCChHHHhhcCeeeccccccccccchhccCCCC-CCCHHHHHHHHHHcCCChHHHhhcCCcccc---------
Q 037346 993 IDGKDISLIGLHDLRTRLSIIPQDPTMFEGTTRSNLDPLE-EHADEQIWEALDKCQLGDEVRKKKGKLDSQ--------- 1062 (1156)
Q Consensus 993 idG~di~~i~~~~LR~~i~~VpQdp~LF~gTIr~Nl~~~~-~~~deei~~al~~~~l~~~i~~lp~gl~s~--------- 1062 (1156)
+||+|+++++.+++|+++++|||||++|+|||||||.++. +.+|+++++|++.+++++++.++|+||||.
T Consensus 381 ~~g~~i~~~~~~~lr~~i~~v~Q~~~lf~~ti~~Ni~~~~~~~~~~~i~~a~~~~~l~~~i~~lp~Gldt~v~e~g~~LS 460 (529)
T TIGR02857 381 VNGVPLADADADSWRDQIAWVPQHPFLFAGTIAENIRLARPDASDAEIRRALERAGLDEFVAALPQGLDTLIGEGGAGLS 460 (529)
T ss_pred ECCEehhhCCHHHHHhheEEEcCCCcccCcCHHHHHhccCCCCCHHHHHHHHHHcCcHHHHHhCcccccchhccccccCC
Confidence 9999999999999999999999999999999999999865 467999999999999999999999999975
Q ss_pred ---------ccccccCCCEEEEecCCcCCCHHHHHHHHHHHHHhcCCceEEEeecCcccccccCEEEEE
Q 037346 1063 ---------GRVLLKKSKVLVLDEATASVDTATDNQIQQTLRQHFSDCTVVTIAHRITSVLDSAMVLLL 1122 (1156)
Q Consensus 1063 ---------ARALLr~~~ILiLDEaTS~LD~~te~~I~~~l~~~~~~~TvI~IaHrl~ti~~~D~I~Vl 1122 (1156)
|||++++|+|||||||||+||++|++.|++.|++..+++|+|+||||+++++.||+|+||
T Consensus 461 gGq~qri~laRal~~~~~ililDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~~d~i~~l 529 (529)
T TIGR02857 461 GGQAQRLALARAFLRDAPLLLLDEPTAHLDAETEALVTEALRALAQGRTVLLVTHRLALAERADRIVVL 529 (529)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEeCcccccCHHHHHHHHHHHHHhcCCCEEEEEecCHHHHHhCCEEEeC
Confidence 899999999999999999999999999999999988899999999999999999999986
|
Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD |
| >TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR) | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.9e-54 Score=571.84 Aligned_cols=443 Identities=20% Similarity=0.179 Sum_probs=328.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcCCccccCCCCHHHHHHHHHHHHHH-------HH--------------HHHHHHHHHHH
Q 037346 135 VQQFGIRFRATLFAMIYNKGLTLSGQAKQGNTSGEIINLIAVDAER-------AL--------------LILYKKLGLAS 193 (1156)
Q Consensus 135 ~~~~~~~~r~~l~~~i~~k~l~l~~~~~~~~~~g~i~nl~s~D~~~-------~~--------------~ll~~~lg~~~ 193 (1156)
..+.+.+.-..+...+++++++.+...+++.++|+++|+++.|++. .+ +++++..++.+
T Consensus 949 ~~~~~~~~~~~l~~~l~~~ll~~p~~ff~~~~~G~ilnRfs~Di~~id~~l~~~~~~~~~~~~~~i~~l~~i~~~~p~l~ 1028 (1490)
T TIGR01271 949 LVHTLLTVSKRLHEQMLHSVLQAPMAVLNTMKAGRILNRFTKDMAIIDDMLPLTLFDFIQLTLIVLGAIFVVSVLQPYIF 1028 (1490)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCHHHhCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3566777888889999999999999999999999999999999987 00 00000001111
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH--HHHHH---HHHH-HHH--
Q 037346 194 IATLLATAIVMLANFPLGRLREKFQDKFMETKDRRIKATSEILRNMRILKLQGWELKKNE--TAWLK---KSVY-TEA-- 265 (1156)
Q Consensus 194 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~r~~~~~e~l~~i~~IK~~~~e~r~~e--~~~~~---~~~~-~~~-- 265 (1156)
++.++++++++.+..++.+..+..++.....+....+...|.++|+.+||.|++|.+..+ .+... +..+ ...
T Consensus 1029 l~~~~l~~~~~~~~~~~~~~~r~l~~~~~~~~s~l~~~~~Etl~Gl~tIraf~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1108 (1490)
T TIGR01271 1029 IAAIPVAVIFIMLRAYFLRTSQQLKQLESEARSPIFSHLITSLKGLWTIRAFGRQSYFETLFHKALNLHTANWFLYLSTL 1108 (1490)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhcCHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 100111111111112222223333444444555667889999999999999999922111 11111 0000 000
Q ss_pred -HHHHHHHH-HHHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCc
Q 037346 266 -MISFFCWG-APTFVSVVTFGSCILLGIPLESGMILSALTTFKILQEPIYYLPESISMMIQAKVPLDRIASFLCLEGLQT 343 (1156)
Q Consensus 266 -~~~~~~~~-~~~~~~~~~f~~~~~~~~~lt~~~~ft~l~~~~~l~~pl~~l~~~~~~~~~a~~s~~Ri~~fl~~~~~~~ 343 (1156)
+....... ...++..+ +...+.....++|.+-.++++...+..++..+...+..+..+.+|.+||.++++.++...
T Consensus 1109 ~wl~~~~~~i~~~~~~~~--~~l~~~~~~~~~g~~g~~l~~~~~l~~~l~~l~~~~~~le~~~~s~eRi~~~~~~~~e~~ 1186 (1490)
T TIGR01271 1109 RWFQMRIDIIFVFFFIAV--TFIAIGTNQDGEGEVGIILTLAMNILSTLQWAVNSSIDVDGLMRSVSRVFKFIDLPQEEP 1186 (1490)
T ss_pred HHHHHHHHHHHHHHHHHH--HHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccc
Confidence 10000000 00010111 111111223456666666667777888888888888999999999999999997654322
Q ss_pred cccc--------------c-C-C-CCCCCccEEEeeeEEEeCCCCCCCccccceEEeeCCeEEEEEcCCCCChHHHHHHH
Q 037346 344 DVLE--------------K-M-P-RGNSDTAIEIIDGSFSWDFSSPNPTLRNINLKVFHGMRVAVCGTVGSGKSSCLSCI 406 (1156)
Q Consensus 344 ~~~~--------------~-~-~-~~~~~~~i~~~~~~f~~~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKSTll~~i 406 (1156)
...+ . . + ..+..+.|+|+||+|+|+.. .+++|+|+||+|++||.+||||+||||||||+++|
T Consensus 1187 ~~~~~~~~~~~~~~~~~~~~~~~~~wp~~g~I~f~nVs~~Y~~~-~~~vL~~is~~I~~GekvaIvGrSGsGKSTLl~lL 1265 (1490)
T TIGR01271 1187 RPSGGGGKYQLSTVLVIENPHAQKCWPSGGQMDVQGLTAKYTEA-GRAVLQDLSFSVEGGQRVGLLGRTGSGKSTLLSAL 1265 (1490)
T ss_pred cccccccccccccccccccCCCCCCCCCCCeEEEEEEEEEeCCC-CcceeeccEEEEcCCCEEEEECCCCCCHHHHHHHH
Confidence 1000 0 0 0 01234679999999999743 46899999999999999999999999999999999
Q ss_pred hCCCCCCCcEEEEcC-------------eEEEEecCCcCCCccHHHHhhcCCCCCHHHHHHHHHHhCCchhhhhCCCCCc
Q 037346 407 LGGVPKESGIIRLCG-------------TKAYVAQSPWIQSGKIEENILFGKEMDRERYERVLEACSLKKDLEVLPFGDQ 473 (1156)
Q Consensus 407 ~g~~~~~~G~i~~~g-------------~~~~v~Q~~~~~~~ti~eni~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~ 473 (1156)
+|+++ .+|+|.+|| +++||||+|.+|+|||||||.....+++++..++++.|+|.+.+..+|+|++
T Consensus 1266 ~rl~~-~~G~I~IdG~di~~i~~~~lR~~is~IpQdp~LF~GTIR~NLdp~~~~tdeei~~aL~~~~L~~~i~~lp~GLd 1344 (1490)
T TIGR01271 1266 LRLLS-TEGEIQIDGVSWNSVTLQTWRKAFGVIPQKVFIFSGTFRKNLDPYEQWSDEEIWKVAEEVGLKSVIEQFPDKLD 1344 (1490)
T ss_pred hhhcC-CCcEEEECCEEcccCCHHHHHhceEEEeCCCccCccCHHHHhCcccCCCHHHHHHHHHHCCCHHHHHhCccccc
Confidence 99997 799999999 3699999999999999999987777889999999999999999999999999
Q ss_pred cccccCCCCCCHHHHHHHHHHHhhccCCCeeeeeCCCCCcCHHHHHHHHHHHHh-cCCCEEEEEccCCCccccCCEEEEE
Q 037346 474 TIIGERGINLSGGQKQRIQIARPLYQDADIFLLDDPFSPVDDHTGAHLFKFCWV-SSSKTVIYATHQVEFLPAADLILVI 552 (1156)
Q Consensus 474 t~v~~~g~~LSgGqkqRi~lAral~~~~~illlDep~s~lD~~~~~~i~~~~~~-~~~~tvi~vtH~~~~~~~~d~i~~l 552 (1156)
|.||++|.+||||||||++|||||+++|+|||||||||+||+++.+.|.+.+.. .+++|+|+||||++.+..||+|++|
T Consensus 1345 t~v~e~G~nLSgGQrQrL~LARALLr~~~ILlLDEaTS~lD~~Te~~I~~~L~~~~~~~TvI~IaHRl~ti~~~DrIlvL 1424 (1490)
T TIGR01271 1345 FVLVDGGYVLSNGHKQLMCLARSILSKAKILLLDEPSAHLDPVTLQIIRKTLKQSFSNCTVILSEHRVEALLECQQFLVI 1424 (1490)
T ss_pred cccccCCCcCCHHHHHHHHHHHHHhCCCCEEEEeCCcccCCHHHHHHHHHHHHHHcCCCEEEEEecCHHHHHhCCEEEEE
Confidence 999999999999999999999999999999999999999999999998777655 5789999999999999999999999
Q ss_pred eCCeEEEccChHHHHhcCcchHHHHHhhh
Q 037346 553 KDGKITQAGKYSDILNSGTDFMELVGAHK 581 (1156)
Q Consensus 553 ~~G~i~~~g~~~~l~~~~~~~~~~~~~~~ 581 (1156)
++|+|++.|+|+++++.++.|.++++...
T Consensus 1425 ~~G~ivE~g~p~~Ll~~~~~f~~l~~~~~ 1453 (1490)
T TIGR01271 1425 EGSSVKQYDSIQKLLNETSLFKQAMSAAD 1453 (1490)
T ss_pred ECCEEEEeCCHHHHHcCCcHHHHHHHHhC
Confidence 99999999999999987778888876543
|
The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se. |
| >PRK10522 multidrug transporter membrane component/ATP-binding component; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-53 Score=518.86 Aligned_cols=477 Identities=16% Similarity=0.185 Sum_probs=331.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHhcCCCcc-c-chhhHH--HHHHHHHHHHHHHHHHHHHHH
Q 037346 71 LAKVLFFSAWQEILFIAILALLYTLATYVG-PYLIDNFVQYLNGRQAF-E-YEGYVL--CLSERHWFFQVQQFGIRFRAT 145 (1156)
Q Consensus 71 l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-p~ll~~~i~~~~~~~~~-~-~~g~~l--~~~~~~~~~~~~~~~~~~r~~ 145 (1156)
+++.+++.+++.++..+++.++..++.++. |++.+.+++.+...... . ..++++ .+......+...+++.++...
T Consensus 3 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~lid~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (547)
T PRK10522 3 LLRLVWRQYRWPFISVMALSLASAALGIGLIAFINQRLIETADTSLLVLPEFLGLLLLLMAVTLGSQLALTTLGHHFVYR 82 (547)
T ss_pred hHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456678888888888889999999888874 77878888865321110 0 111111 122222334456677888888
Q ss_pred HHHHHHHHHhcCCccccCCCCHHHHHHHHHHHHHHH--------------------HHHHHHHHHHHHHHHHHHHHHHHH
Q 037346 146 LFAMIYNKGLTLSGQAKQGNTSGEIINLIAVDAERA--------------------LLILYKKLGLASIATLLATAIVML 205 (1156)
Q Consensus 146 l~~~i~~k~l~l~~~~~~~~~~g~i~nl~s~D~~~~--------------------~~ll~~~lg~~~l~~~~~~~~~~~ 205 (1156)
++..+|+|.++++...+++.++|++++++++|++.. ++++++.-+..+++.++++++.++
T Consensus 83 lR~~l~~~ll~~~~~~~~~~~~g~~lsrl~~dv~~i~~~~~~l~~~~~~~~~~i~~~~~l~~~~~~l~li~l~~~~~~~~ 162 (547)
T PRK10522 83 LRSEFIKRILDTHVERIEQLGSASLLASLTSDVRNITIAFVRLPELVQGIILTLGSAAYLAWLSPKMLLVTAIWMAVTIW 162 (547)
T ss_pred HHHHHHHHHHhCCHHHHhccCccchHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 999999999999999889999999999999999870 001111111111112222222233
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH----H--HH-HHHHHHHHHHHHHHHHHHHHHHHHH
Q 037346 206 ANFPLGRLREKFQDKFMETKDRRIKATSEILRNMRILKLQGWELK----K--NE-TAWLKKSVYTEAMISFFCWGAPTFV 278 (1156)
Q Consensus 206 ~~~~~~~~~~~~~~~~~~~~d~r~~~~~e~l~~i~~IK~~~~e~r----~--~e-~~~~~~~~~~~~~~~~~~~~~~~~~ 278 (1156)
+...+.+...+..++.++..++..+.+.|.++|++++++...... + .+ .+..++.................++
T Consensus 163 i~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 242 (547)
T PRK10522 163 GGFVLVARVYKHMATLRETEDKLYNDYQTVLEGRKELTLNRERAEYVFENEYEPDAQEYRHHIIRADTFHLSAVNWSNIM 242 (547)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHhhhccHHHHHHHHHHHHhHHHHHHHhhhHHHHHHHHHHHHHHHHH
Confidence 344455666667777788888999999999999999974331110 0 00 0111111111111111111111111
Q ss_pred HHHHHHHHHHhCCC---ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCccccccCCCCCCC
Q 037346 279 SVVTFGSCILLGIP---LESGMILSALTTFKILQEPIYYLPESISMMIQAKVPLDRIASFLCLEGLQTDVLEKMPRGNSD 355 (1156)
Q Consensus 279 ~~~~f~~~~~~~~~---lt~~~~ft~l~~~~~l~~pl~~l~~~~~~~~~a~~s~~Ri~~fl~~~~~~~~~~~~~~~~~~~ 355 (1156)
..+.++.+++.++. .+.+.+..+..+...+..|+..+...+..+.+++.+++|+.++++.++..+.. +..+ .+..
T Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~l~~~~~~~~~~~~a~~ri~~l~~~~~~~~~~-~~~~-~~~~ 320 (547)
T PRK10522 243 MLGAIGLVFYMANSLGWADTNVAATYSLTLLFLRTPLLSAVGALPTLLSAQVAFNKLNKLALAPYKAEFP-RPQA-FPDW 320 (547)
T ss_pred HHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccc-cccc-cCcC
Confidence 12222323322221 22233333333334467899999999999999999999999998654322111 1111 1112
Q ss_pred ccEEEeeeEEEeCCCCCCCccccceEEeeCCeEEEEEcCCCCChHHHHHHHhCCCCCCCcEEEEcCe-------------
Q 037346 356 TAIEIIDGSFSWDFSSPNPTLRNINLKVFHGMRVAVCGTVGSGKSSCLSCILGGVPKESGIIRLCGT------------- 422 (1156)
Q Consensus 356 ~~i~~~~~~f~~~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKSTll~~i~g~~~~~~G~i~~~g~------------- 422 (1156)
+.++++|++|+|+. ++++|+|+||+|++|++++|+||||||||||+++|+|+++|++|+|.++|.
T Consensus 321 ~~i~~~~v~f~y~~--~~~~l~~i~~~i~~G~~~aivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~~~~ 398 (547)
T PRK10522 321 QTLELRNVTFAYQD--NGFSVGPINLTIKRGELLFLIGGNGSGKSTLAMLLTGLYQPQSGEILLDGKPVTAEQPEDYRKL 398 (547)
T ss_pred ceEEEEEEEEEeCC--CCeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEECCCCCHHHHhhh
Confidence 46999999999973 347999999999999999999999999999999999999999999999983
Q ss_pred EEEEecCCcCCCccHHHHhhcCCCCCHHHHHHHHHHhCCchhhhhCCCCCccccccCCCCCCHHHHHHHHHHHhhccCCC
Q 037346 423 KAYVAQSPWIQSGKIEENILFGKEMDRERYERVLEACSLKKDLEVLPFGDQTIIGERGINLSGGQKQRIQIARPLYQDAD 502 (1156)
Q Consensus 423 ~~~v~Q~~~~~~~ti~eni~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~t~v~~~g~~LSgGqkqRi~lAral~~~~~ 502 (1156)
++|++|+|.+|++|++|| +...+++..+++++.+++..++.. ++|. .+|.+||||||||++||||++++|+
T Consensus 399 i~~v~q~~~lf~~ti~~n---~~~~~~~~~~~~~~~~~l~~~~~~-~~~~-----~~G~~LSgGq~qRl~lARal~~~~~ 469 (547)
T PRK10522 399 FSAVFTDFHLFDQLLGPE---GKPANPALVEKWLERLKMAHKLEL-EDGR-----ISNLKLSKGQKKRLALLLALAEERD 469 (547)
T ss_pred eEEEecChhHHHHhhccc---cCchHHHHHHHHHHHcCCchhhhc-cccC-----CCCCCCCHHHHHHHHHHHHHhcCCC
Confidence 699999999999999999 445667778888888888766542 3221 1478999999999999999999999
Q ss_pred eeeeeCCCCCcCHHHHHHHHHHHHh---cCCCEEEEEccCCCccccCCEEEEEeCCeEEEc
Q 037346 503 IFLLDDPFSPVDDHTGAHLFKFCWV---SSSKTVIYATHQVEFLPAADLILVIKDGKITQA 560 (1156)
Q Consensus 503 illlDep~s~lD~~~~~~i~~~~~~---~~~~tvi~vtH~~~~~~~~d~i~~l~~G~i~~~ 560 (1156)
++|||||||+||+++++.+.+.+.. ..++|+|+|||+++.+..||+|++|++|++++.
T Consensus 470 ililDE~ts~LD~~~~~~i~~~l~~~~~~~~~tvi~itH~~~~~~~~d~i~~l~~G~i~e~ 530 (547)
T PRK10522 470 ILLLDEWAADQDPHFRREFYQVLLPLLQEMGKTIFAISHDDHYFIHADRLLEMRNGQLSEL 530 (547)
T ss_pred EEEEECCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEEechHHHHhCCEEEEEECCEEEEe
Confidence 9999999999999999988876643 248999999999999999999999999999865
|
|
| >PRK11147 ABC transporter ATPase component; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-54 Score=534.73 Aligned_cols=195 Identities=27% Similarity=0.363 Sum_probs=156.7
Q ss_pred cEEEeeeEEEeCCCCCCCccccceEEeeCCeEEEEEcCCCCChHHHHHHHhCCCCCCCcEEEEcCe--EEEEecCCcC-C
Q 037346 357 AIEIIDGSFSWDFSSPNPTLRNINLKVFHGMRVAVCGTVGSGKSSCLSCILGGVPKESGIIRLCGT--KAYVAQSPWI-Q 433 (1156)
Q Consensus 357 ~i~~~~~~f~~~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKSTll~~i~g~~~~~~G~i~~~g~--~~~v~Q~~~~-~ 433 (1156)
.|+++|++++|+ ++++|+|+||+|++|++++|+||||||||||+++|+|+++|++|+|.++|. ++|++|.+.. .
T Consensus 3 ~l~i~~ls~~~~---~~~il~~is~~i~~Ge~v~LvG~NGsGKSTLLriiaG~~~p~~G~I~~~~~~~~~~l~q~~~~~~ 79 (635)
T PRK11147 3 LISIHGAWLSFS---DAPLLDNAELHIEDNERVCLVGRNGAGKSTLMKILNGEVLLDDGRIIYEQDLIVARLQQDPPRNV 79 (635)
T ss_pred EEEEeeEEEEeC---CceeEeCcEEEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCCeEEEeCCCCEEEEeccCCCCCC
Confidence 488999999996 357999999999999999999999999999999999999999999999874 6899997643 2
Q ss_pred CccHHHHhhcCCC-------------------C----------------------CHHHHHHHHHHhCCchhhhhCCCCC
Q 037346 434 SGKIEENILFGKE-------------------M----------------------DRERYERVLEACSLKKDLEVLPFGD 472 (1156)
Q Consensus 434 ~~ti~eni~~~~~-------------------~----------------------~~~~~~~~~~~~~l~~~~~~~~~g~ 472 (1156)
.+++.+++..+.. . .+.+..++++.+++.
T Consensus 80 ~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgl~---------- 149 (635)
T PRK11147 80 EGTVYDFVAEGIEEQAEYLKRYHDISHLVETDPSEKNLNELAKLQEQLDHHNLWQLENRINEVLAQLGLD---------- 149 (635)
T ss_pred CCCHHHHHHHhhHHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHhCCCC----------
Confidence 3577766532210 0 011122222222221
Q ss_pred ccccccCCCCCCHHHHHHHHHHHhhccCCCeeeeeCCCCCcCHHHHHHHHHHHHhcCCCEEEEEccCCCcccc-CCEEEE
Q 037346 473 QTIIGERGINLSGGQKQRIQIARPLYQDADIFLLDDPFSPVDDHTGAHLFKFCWVSSSKTVIYATHQVEFLPA-ADLILV 551 (1156)
Q Consensus 473 ~t~v~~~g~~LSgGqkqRi~lAral~~~~~illlDep~s~lD~~~~~~i~~~~~~~~~~tvi~vtH~~~~~~~-~d~i~~ 551 (1156)
......+|||||||||+|||||+.+|++|||||||++||+.+..++.+.+.... .|||+|||+++++.. ||+|++
T Consensus 150 ---~~~~~~~LSgGekqRv~LAraL~~~P~lLLLDEPt~~LD~~~~~~L~~~L~~~~-~tvlivsHd~~~l~~~~d~i~~ 225 (635)
T PRK11147 150 ---PDAALSSLSGGWLRKAALGRALVSNPDVLLLDEPTNHLDIETIEWLEGFLKTFQ-GSIIFISHDRSFIRNMATRIVD 225 (635)
T ss_pred ---CCCchhhcCHHHHHHHHHHHHHhcCCCEEEEcCCCCccCHHHHHHHHHHHHhCC-CEEEEEeCCHHHHHHhcCeEEE
Confidence 134567899999999999999999999999999999999999999987765443 699999999999865 999999
Q ss_pred EeCCeEE-EccChHHHHh
Q 037346 552 IKDGKIT-QAGKYSDILN 568 (1156)
Q Consensus 552 l~~G~i~-~~g~~~~l~~ 568 (1156)
|++|+++ +.|+++++..
T Consensus 226 L~~G~i~~~~g~~~~~~~ 243 (635)
T PRK11147 226 LDRGKLVSYPGNYDQYLL 243 (635)
T ss_pred EECCEEEEecCCHHHHHH
Confidence 9999997 5688877654
|
|
| >TIGR01842 type_I_sec_PrtD type I secretion system ABC transporter, PrtD family | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-53 Score=522.19 Aligned_cols=410 Identities=17% Similarity=0.188 Sum_probs=311.0
Q ss_pred HHHHHHHHHHHHHHHHhccccccccccccccchhhhhcccccccchhhhcccchH-HHHHHHHHHHHHHHHHHHHHHHHH
Q 037346 712 AGYKTATQLFNKMHVCIFRAPMYFFDSTPSGRILNRVSENVKWADQSAADMDIPY-DIGAFAFSMIQLLGIIVVMSLVAW 790 (1156)
Q Consensus 712 ~~~~~~~~l~~~l~~~ll~~p~~ff~~~~~G~il~R~s~d~~~~d~~~~d~~l~~-~~~~~~~~~~~~~~~~~~~~~~~~ 790 (1156)
.+.++...+|.++++++++.|+. ..|...++++ .|+..+...+.. .+..++..++.++ .+++++.++|
T Consensus 73 ~~~~~~~~lr~~~~~~ll~~~~~-----~~~~~~~~~~-----~d~~~i~~~~~~~~~~~~~~~~~~~~-~~~~l~~~~~ 141 (544)
T TIGR01842 73 IGEKLDGALNQPIFAASFSATLR-----RGKIDGLQAL-----RDLDQLRQFLTGPGLFAFFDAPWMPI-YLLVCFLLHP 141 (544)
T ss_pred HHHHHHHHHHHHHHHHHhcCccc-----CccchHHHHH-----HHHHHHHHHHhhhHHHHHHHHHHHHH-HHHHHHHHhh
Confidence 45678889999999999999984 2366788888 566665554433 2333344334333 3456778888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhChHHHHHHhhccchhhhhhcchHHHHHHHHHHHHHHHhhHHHHHH
Q 037346 791 QVLIVFVPVIATFIWYQQYYITSTRELSRLIGVCKAPVIQQFSETISGSTTIRSLDQELRFRDTNMKLIDEYSRPKFHIA 870 (1156)
Q Consensus 791 ~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~e~l~Gi~tIra~~~e~~~~~~~~~~~~~~~~~~~~~~ 870 (1156)
+++++++..+++.+++..++.+..+...+...+..+...+++.|+++|+++||+|+.|+.+.+++.+..++..+......
T Consensus 142 ~l~li~l~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~ 221 (544)
T TIGR01842 142 WIGILALGGAVVLVGLALLNNRATKKPLKEATEASIRANNLADSALRNAEVIEAMGMMGNLTKRWGRFHSKYLSAQSAAS 221 (544)
T ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHhhHHHHHHhcHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHH
Confidence 88766554444444444444444455555566777888999999999999999999999999999998888766655444
Q ss_pred HHHHHHHHHHHHHHHHHHHH---HHHHH---------------------HHcCCCccchHHHHHHHhHHHHHHHHhhcCC
Q 037346 871 GAMEWLRFCIDMLSSITFAF---SLAFL---------------------ISVPNGIIHPYKNLERKIISVERILQCACIP 926 (1156)
Q Consensus 871 ~~~~~~~~~l~~~~~~~~~~---~~~~~---------------------~~~~~~~~~~~~~~~~~~~s~~Ri~~~~~~~ 926 (1156)
....+......++..+...+ ...++ ..+..........+.....+.+|+.++.+.+
T Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~g~it~g~l~a~~~~~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~l~~~ 301 (544)
T TIGR01842 222 DRAGMLSNLSKYFRIVLQSLVLGLGAYLAIDGEITPGMMIAGSILVGRALAPIDGAIGGWKQFSGARQAYKRLNELLANY 301 (544)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 33333222222211111110 00000 0011111122256678889999999998766
Q ss_pred CCCcccccCCCCCCCCCCCCeEEEEEEEEEEcCC---------------CCceeeCCCCCCHHHHHHHHhhcccCCCceE
Q 037346 927 SEPALVIEATKPNNSRPSHGEVNIRHLQVRYAPN---------------LPLVLRGRTGSGKSTLIQTLFRIVESTAGHI 991 (1156)
Q Consensus 927 ~e~~~~~~~~~~~~~~p~~g~I~~~~Vsf~Y~~~---------------~~~vL~G~SGsGKSTL~~lL~rl~~p~~G~I 991 (1156)
++.... .. ..+..+.|+++||+|+|+++ +.++|+|+||||||||+++|+|+|+|++|+|
T Consensus 302 ~~~~~~---~~---~~~~~~~i~~~~v~~~y~~~~~~~l~~~~~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i 375 (544)
T TIGR01842 302 PSRDPA---MP---LPEPEGHLSVENVTIVPPGGKKPTLRGISFRLQAGEALAIIGPSGSGKSTLARLIVGIWPPTSGSV 375 (544)
T ss_pred ccccCC---CC---CCCCCCeEEEEEEEEEcCCCCccccccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceE
Confidence 553211 10 11234679999999999543 2346779999999999999999999999999
Q ss_pred EEcCeeCCCCChHHHhhcCeeeccccccccccchhccCCCCC-CCHHHHHHHHHHcCCChHHHhhcCCcccc--------
Q 037346 992 LIDGKDISLIGLHDLRTRLSIIPQDPTMFEGTTRSNLDPLEE-HADEQIWEALDKCQLGDEVRKKKGKLDSQ-------- 1062 (1156)
Q Consensus 992 ~idG~di~~i~~~~LR~~i~~VpQdp~LF~gTIr~Nl~~~~~-~~deei~~al~~~~l~~~i~~lp~gl~s~-------- 1062 (1156)
.+||+|+.+++.+.+|+++++|||||++|++|+||||.++++ .++++++++++.++++++++++|+|+|+.
T Consensus 376 ~~~g~~i~~~~~~~~~~~i~~v~q~~~lf~~ti~~Ni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~gl~t~~~~~g~~L 455 (544)
T TIGR01842 376 RLDGADLKQWDRETFGKHIGYLPQDVELFPGTVAENIARFGENADPEKIIEAAKLAGVHELILRLPDGYDTVIGPGGATL 455 (544)
T ss_pred EECCEehhhCCHHHHhhheEEecCCcccccccHHHHHhccCCCCCHHHHHHHHHHhChHHHHHhCccccccccCCCcCCC
Confidence 999999999999999999999999999999999999986654 78999999999999999999999999974
Q ss_pred ----------ccccccCCCEEEEecCCcCCCHHHHHHHHHHHHHhc-CCceEEEeecCcccccccCEEEEEeCcEEeeec
Q 037346 1063 ----------GRVLLKKSKVLVLDEATASVDTATDNQIQQTLRQHF-SDCTVVTIAHRITSVLDSAMVLLLNHGLIKEYD 1131 (1156)
Q Consensus 1063 ----------ARALLr~~~ILiLDEaTS~LD~~te~~I~~~l~~~~-~~~TvI~IaHrl~ti~~~D~I~Vl~~G~IvE~G 1131 (1156)
|||++++|+|||||||||+||+++++.|.+.|++.. +++|+|+||||++++..||+|++|++|+++|.|
T Consensus 456 SgGq~qrl~lARall~~~~ililDEpts~LD~~~~~~i~~~l~~~~~~~~tvi~ith~~~~~~~~d~i~~l~~G~i~~~g 535 (544)
T TIGR01842 456 SGGQRQRIALARALYGDPKLVVLDEPNSNLDEEGEQALANAIKALKARGITVVVITHRPSLLGCVDKILVLQDGRIARFG 535 (544)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEeCCccccCHHHHHHHHHHHHHHhhCCCEEEEEeCCHHHHHhCCEEEEEECCEEEeeC
Confidence 899999999999999999999999999999999875 689999999999999999999999999999999
Q ss_pred ChhHHhc
Q 037346 1132 SPTKLLE 1138 (1156)
Q Consensus 1132 ~~~eLl~ 1138 (1156)
+|++|++
T Consensus 536 ~~~~l~~ 542 (544)
T TIGR01842 536 ERDEVLA 542 (544)
T ss_pred CHHHHhh
Confidence 9999985
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. |
| >TIGR01194 cyc_pep_trnsptr cyclic peptide transporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-52 Score=514.98 Aligned_cols=411 Identities=15% Similarity=0.142 Sum_probs=307.2
Q ss_pred HHHHHHHHHHHHHHHHhccccccccccccccchhhhhcccccccchhhhcccchHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 037346 712 AGYKTATQLFNKMHVCIFRAPMYFFDSTPSGRILNRVSENVKWADQSAADMDIPYDIGAFAFSMIQLLGIIVVMSLVAWQ 791 (1156)
Q Consensus 712 ~~~~~~~~l~~~l~~~ll~~p~~ff~~~~~G~il~R~s~d~~~~d~~~~d~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 791 (1156)
.+.+...++|.++++++++.|+.||+++++|++++|++ .|+..++..+. .+..++..++.+++.++++++.+|.
T Consensus 80 ~~~~~~~~lR~~l~~~l~~~~~~~~~~~~~G~l~srl~-----~Dv~~i~~~~~-~~~~~~~~~~~~~~~~~~l~~~~~~ 153 (555)
T TIGR01194 80 AGMHIIANLRIALCEKILGAPIEEIDRRGAHNLIPLLT-----HDIDQINAFLF-IFPPIAIALAIFFFCIAYLAYLSVP 153 (555)
T ss_pred HHHHHHHHHHHHHHHHHHcCCHHHHHhcCcchhhHHHh-----hhHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhHH
Confidence 56788899999999999999999999999999999999 66666665543 3555666677777888888999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhChHHHHHHhhccchhhhhhcchHH--HHHHHHHHHHHHHhhHHHHH
Q 037346 792 VLIVFVPVIATFIWYQQYYITSTRELSRLIGVCKAPVIQQFSETISGSTTIRSLDQEL--RFRDTNMKLIDEYSRPKFHI 869 (1156)
Q Consensus 792 l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~e~l~Gi~tIra~~~e~--~~~~~~~~~~~~~~~~~~~~ 869 (1156)
++++++.++++.+++..+..+..++..+......+.+.+.+.|.+.|+++||+|+.++ ...+++.+..++..+.....
T Consensus 154 L~li~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~g~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 233 (555)
T TIGR01194 154 MFAITISAIIIGTAAQLLAFMGGFKFFHAARDEEDAFNEHTHAIAFGAKELKIHGIRRLSFAHGAIQESANNIADLHIIE 233 (555)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhHHHHHhcCHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 9887666555555544444444455555556667789999999999999999999954 45566666666655544332
Q ss_pred HHHHHHHHHHHHHHHHHHHH---------------------HHHHHHHHcCCCccchHHHHHHHhHHHHHHHHhhcCCCC
Q 037346 870 AGAMEWLRFCIDMLSSITFA---------------------FSLAFLISVPNGIIHPYKNLERKIISVERILQCACIPSE 928 (1156)
Q Consensus 870 ~~~~~~~~~~l~~~~~~~~~---------------------~~~~~~~~~~~~~~~~~~~~~~~~~s~~Ri~~~~~~~~e 928 (1156)
............++..+... .....+..+.........+++....+.+|+.++.+.+.+
T Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~g~l~a~~~~~~~l~~pi~~l~~~~~~~~~a~~s~~ri~~ll~~~~~ 313 (555)
T TIGR01194 234 ILIFIAAENFGQLLFFLLIGCALFAAAMFASIDAAAISAFVLALLYIKGPLEMLVSALPILAQAQIACQRLADFGERFNE 313 (555)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Confidence 22221111111111100000 000011111112222336778889999999998754322
Q ss_pred CcccccCCC-CC----CCCCCCCeEEEEEEEEEEcCC---C---------------CceeeCCCCCCHHHHHHHHhhccc
Q 037346 929 PALVIEATK-PN----NSRPSHGEVNIRHLQVRYAPN---L---------------PLVLRGRTGSGKSTLIQTLFRIVE 985 (1156)
Q Consensus 929 ~~~~~~~~~-~~----~~~p~~g~I~~~~Vsf~Y~~~---~---------------~~vL~G~SGsGKSTL~~lL~rl~~ 985 (1156)
++...+... .. ......+.|+|+||+|+|++. . .++|+||||||||||+++|+|+|+
T Consensus 314 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~v~f~y~~~~~~~~~~l~~vs~~i~~G~~~aivG~sGsGKSTl~~ll~g~~~ 393 (555)
T TIGR01194 314 PEPELELSDADNVLLLAHDKSVDSIELKDVHMNPKAPEGSEGFALGPIDLRIAQGDIVFIVGENGCGKSTLAKLFCGLYI 393 (555)
T ss_pred ccccccccccccccccccCCCCceEEEEEEEEEeCCCCCCcCceeccceEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC
Confidence 211100000 00 111124679999999999642 1 134669999999999999999999
Q ss_pred CCCceEEEcCeeCCCCChHHHhhcCeeeccccccccccchhccCCCCCCCHHHHHHHHHHcCCChHHHhhcCCcccc---
Q 037346 986 STAGHILIDGKDISLIGLHDLRTRLSIIPQDPTMFEGTTRSNLDPLEEHADEQIWEALDKCQLGDEVRKKKGKLDSQ--- 1062 (1156)
Q Consensus 986 p~~G~I~idG~di~~i~~~~LR~~i~~VpQdp~LF~gTIr~Nl~~~~~~~deei~~al~~~~l~~~i~~lp~gl~s~--- 1062 (1156)
|++|+|.+||+|+++++.+++|+++++|+|||++|++|+++|+. ++.++++++++++.+++++++..+|+|||+.
T Consensus 394 p~~G~i~~~g~~i~~~~~~~~~~~i~~v~q~~~lf~~ti~~n~~--~~~~~~~~~~~~~~~~l~~~~~~lp~g~~t~~~L 471 (555)
T TIGR01194 394 PQEGEILLDGAAVSADSRDDYRDLFSAIFADFHLFDDLIGPDEG--EHASLDNAQQYLQRLEIADKVKIEDGGFSTTTAL 471 (555)
T ss_pred CCCcEEEECCEECCCCCHHHHHhhCcEEccChhhhhhhhhcccc--cchhHHHHHHHHHHcCCchhhcccccccCCcccC
Confidence 99999999999999999999999999999999999999999973 3567899999999999999999999999855
Q ss_pred ----------ccccccCCCEEEEecCCcCCCHHHHHHHHHHHHH-h-cCCceEEEeecCcccccccCEEEEEeCcEEeee
Q 037346 1063 ----------GRVLLKKSKVLVLDEATASVDTATDNQIQQTLRQ-H-FSDCTVVTIAHRITSVLDSAMVLLLNHGLIKEY 1130 (1156)
Q Consensus 1063 ----------ARALLr~~~ILiLDEaTS~LD~~te~~I~~~l~~-~-~~~~TvI~IaHrl~ti~~~D~I~Vl~~G~IvE~ 1130 (1156)
|||++++|+|||||||||+||++|++.|++.+.+ . .+++|+|+||||++++..||+|+||++|+|+|.
T Consensus 472 SgGq~qRlalaRall~~~~ililDE~ts~LD~~~~~~i~~~l~~~~~~~~~tiiiisH~~~~~~~~d~i~~l~~G~i~~~ 551 (555)
T TIGR01194 472 STGQQKRLALICAWLEDRPILLFDEWAADQDPAFKRFFYEELLPDLKRQGKTIIIISHDDQYFELADQIIKLAAGCIVKD 551 (555)
T ss_pred CHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeccHHHHHhCCEEEEEECCEEEEe
Confidence 8999999999999999999999999999987643 3 468999999999999999999999999999974
|
This model describes cyclic peptide transporter in bacteria. Bacteria have elaborate pathways for the production of toxins and secondary metabolites. Many such compounds, including syringomycin and pyoverdine are synthesized on non-ribosomal templates consisting of a multienzyme complex. On several occasions the proteins of the complex and transporter protein are present on the same operon. Often times these compounds cross the biological membrane by specific transporters. Syringomycin is an amphipathic, cylclic lipodepsipeptide when inserted into host causes formation of channels, permeable to variety of cations. On the other hand, pyoverdine is a cyclic octa-peptidyl dihydroxyquinoline, which is efficient in sequestering iron for uptake. |
| >COG5265 ATM1 ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.4e-54 Score=465.43 Aligned_cols=438 Identities=23% Similarity=0.313 Sum_probs=327.8
Q ss_pred HHHHHHHHHHHHHHHHHhcCCccccCCCCHH--------------HHHH-----HHH--HHHHHHHHHHHHHHHHHHHHH
Q 037346 138 FGIRFRATLFAMIYNKGLTLSGQAKQGNTSG--------------EIIN-----LIA--VDAERALLILYKKLGLASIAT 196 (1156)
Q Consensus 138 ~~~~~r~~l~~~i~~k~l~l~~~~~~~~~~g--------------~i~n-----l~s--~D~~~~~~ll~~~lg~~~l~~ 196 (1156)
++......+.-..|.++++++...+-+..+| .++. .+. .|+.....++++..||.....
T Consensus 9 v~q~a~r~la~~~F~h~~~Lsl~fHl~r~TGglsR~ierGtkgI~~i~~~~l~~i~P~~~Ei~l~~vi~~~~~~~~f~~~ 88 (497)
T COG5265 9 VGQIAVRVLAYVTFFHLHSLSLRFHLERRTGGLSRAIERGTKGIETILRWILFNILPTLVEISLVAVILWRVYGWWFALT 88 (497)
T ss_pred HHHHHHHHHHHHHHHHHHhcchhhhhhcccCceeeHhhcCcccHHHHHHHHHHHhhHHHHHHHHHHHHHHhhcccHHHHH
Confidence 3444445556667777777765544333333 2222 111 222224455666666655443
Q ss_pred H-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH-----HHHHHHHHHHHH--HHHH
Q 037346 197 L-LATAIVMLANFPLGRLREKFQDKFMETKDRRIKATSEILRNMRILKLQGWELKKN-----ETAWLKKSVYTE--AMIS 268 (1156)
Q Consensus 197 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~r~~~~~e~l~~i~~IK~~~~e~r~~-----e~~~~~~~~~~~--~~~~ 268 (1156)
. +.+++...+........-.++++..++-.+......+.|-+..+||.|+-|..+. -+..+.+..... +...
T Consensus 89 t~vtv~lY~~ftv~~s~wr~~~rr~~n~aDs~a~~~aidsLlnfEtvk~F~ne~~e~~r~~~~~~~Y~~a~~k~~~Sl~~ 168 (497)
T COG5265 89 TLVTVILYLLFTVIVSDWRTDFRRLMNNADSDANAKAIDSLLNFETVKYFGNEEYEAVRYDHALETYEKAAIKVHVSLLV 168 (497)
T ss_pred HHHHHHHHHHhheeehhhhHHHHHhhhhhhhHHHHHHHHHHhhhhheeecCchhhhhhhcCchHHHHHHHHHHHHHHHHH
Confidence 3 3333333333333333344555555555555678889999999999999881111 111222211110 1110
Q ss_pred HHHHHHHH----HHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCcc
Q 037346 269 FFCWGAPT----FVSVVTFGSCILLGIPLESGMILSALTTFKILQEPIYYLPESISMMIQAKVPLDRIASFLCLEGLQTD 344 (1156)
Q Consensus 269 ~~~~~~~~----~~~~~~f~~~~~~~~~lt~~~~ft~l~~~~~l~~pl~~l~~~~~~~~~a~~s~~Ri~~fl~~~~~~~~ 344 (1156)
..+....+ .....+.+..-+..+.+|.|++...-++...+..|++.+...+..+.+++.-.++..+.+..+-...+
T Consensus 169 Ln~gQ~~I~~~~l~~~m~~s~~~v~~g~~TvgD~V~~Nall~qls~Plnflg~~Yrei~q~ltdme~mfdLl~~~~~v~d 248 (497)
T COG5265 169 LNFGQTAIFSTGLRVMMTMSALGVEEGQLTVGDLVNVNALLFQLSIPLNFLGFSYREIRQALTDMEKMFDLLDVEAEVSD 248 (497)
T ss_pred HHHhhHHHHHHHHHHHHhhcHHHHhhccCCchhHHhHHHHHhhhhhhhhhhHHHHHHHHHhhhhHHHHHHhhccchhhcc
Confidence 00000111 11122233334457889999999999999999999999999999999999999999999976533222
Q ss_pred ccccCCCC-CCCccEEEeeeEEEeCCCCCCCccccceEEeeCCeEEEEEcCCCCChHHHHHHHhCCCCCCCcEEEEcCe-
Q 037346 345 VLEKMPRG-NSDTAIEIIDGSFSWDFSSPNPTLRNINLKVFHGMRVAVCGTVGSGKSSCLSCILGGVPKESGIIRLCGT- 422 (1156)
Q Consensus 345 ~~~~~~~~-~~~~~i~~~~~~f~~~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKSTll~~i~g~~~~~~G~i~~~g~- 422 (1156)
..+..+.. ...+.+.|+|++|.|. +.+++|+++||++++|+.+++|||+|+||||++++|.++|++++|.|.+||+
T Consensus 249 ~pda~~L~~~~~g~v~F~~V~F~y~--~~r~iL~~isf~i~~g~tvAiVg~SG~gKsTI~rllfRFyD~~sG~I~id~qd 326 (497)
T COG5265 249 APDAPPLWPVRLGAVAFINVSFAYD--PRRPILNGISFTIPLGKTVAIVGESGAGKSTILRLLFRFYDVNSGSITIDGQD 326 (497)
T ss_pred CCCCccccccccceEEEEEEEeecc--ccchhhcCccccccCccEEEEEeCCCCcHHHHHHHHHHHhCCcCceEEEcchh
Confidence 11111111 2346799999999997 4679999999999999999999999999999999999999999999999995
Q ss_pred ------------EEEEecCCcCCCccHHHHhhcCCC-CCHHHHHHHHHHhCCchhhhhCCCCCccccccCCCCCCHHHHH
Q 037346 423 ------------KAYVAQSPWIQSGKIEENILFGKE-MDRERYERVLEACSLKKDLEVLPFGDQTIIGERGINLSGGQKQ 489 (1156)
Q Consensus 423 ------------~~~v~Q~~~~~~~ti~eni~~~~~-~~~~~~~~~~~~~~l~~~~~~~~~g~~t~v~~~g~~LSgGqkq 489 (1156)
||.|||+..|||.|+..||.+|++ ..++....+.+++++.+.++.+|+|++|.|||+|-.|||||||
T Consensus 327 ir~vtq~slR~aIg~VPQDtvLFNDti~yni~ygr~~at~eev~aaa~~aqi~~fi~~lP~gy~t~VgerglklSggekq 406 (497)
T COG5265 327 IRDVTQQSLRRAIGIVPQDTVLFNDTIAYNIKYGRPDATAEEVGAAAEAAQIHDFIQSLPEGYDTGVGERGLKLSGGEKQ 406 (497)
T ss_pred HHHhHHHHHHHHhCcCcccceehhhhHHHHHhccCccccHHHHHHHHHHhhhhHHHHhCchhhhcccchheeeccCchHH
Confidence 699999999999999999999986 5677888999999999999999999999999999999999999
Q ss_pred HHHHHHhhccCCCeeeeeCCCCCcCHHHHHHHHHHHHh-cCCCEEEEEccCCCccccCCEEEEEeCCeEEEccChHHHHh
Q 037346 490 RIQIARPLYQDADIFLLDDPFSPVDDHTGAHLFKFCWV-SSSKTVIYATHQVEFLPAADLILVIKDGKITQAGKYSDILN 568 (1156)
Q Consensus 490 Ri~lAral~~~~~illlDep~s~lD~~~~~~i~~~~~~-~~~~tvi~vtH~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~ 568 (1156)
||++||+++++|+|++|||+|||||.++++.|...+.. .+|+|.++|.||++++-.||.|+||++|+|+|.|+|++++.
T Consensus 407 rvaiar~ilk~p~il~~deatsaldt~te~~iq~~l~~~~~~rttlviahrlsti~~adeiivl~~g~i~erg~h~~ll~ 486 (497)
T COG5265 407 RVAIARTILKNPPILILDEATSALDTHTEQAIQAALREVSAGRTTLVIAHRLSTIIDADEIIVLDNGRIVERGTHEELLA 486 (497)
T ss_pred HHHHHHHHhcCCCEEEEehhhhHhhhhHHHHHHHHHHHHhCCCeEEEEeehhhhccCCceEEEeeCCEEEecCcHHHHHH
Confidence 99999999999999999999999999999998666544 67999999999999999999999999999999999999999
Q ss_pred cCcchHHHH
Q 037346 569 SGTDFMELV 577 (1156)
Q Consensus 569 ~~~~~~~~~ 577 (1156)
.++.|.+++
T Consensus 487 ~~g~ya~mw 495 (497)
T COG5265 487 AGGLYAEMW 495 (497)
T ss_pred cCChHHHHh
Confidence 988888775
|
|
| >COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.1e-53 Score=497.53 Aligned_cols=460 Identities=22% Similarity=0.319 Sum_probs=321.6
Q ss_pred cEEEeeeEEEeCCCCCCCccccceEEeeCCeEEEEEcCCCCChHHHHHHHhCCCCCCCcEEEEcC--eEEEEecCCcCCC
Q 037346 357 AIEIIDGSFSWDFSSPNPTLRNINLKVFHGMRVAVCGTVGSGKSSCLSCILGGVPKESGIIRLCG--TKAYVAQSPWIQS 434 (1156)
Q Consensus 357 ~i~~~~~~f~~~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKSTll~~i~g~~~~~~G~i~~~g--~~~~v~Q~~~~~~ 434 (1156)
.|.++|++++|+ ++++|+|+||++.+|+++||||+|||||||||++|.|+..|++|+|...+ +++|++|++....
T Consensus 3 ~i~~~~ls~~~g---~~~l~~~~~l~~~~G~riGLvG~NGaGKSTLLkilaG~~~~~~G~i~~~~~~~v~~l~Q~~~~~~ 79 (530)
T COG0488 3 MITLENLSLAYG---DRPLLENVSLTLNPGERIGLVGRNGAGKSTLLKILAGELEPDSGEVTRPKGLRVGYLSQEPPLDP 79 (530)
T ss_pred eEEEeeeEEeeC---CceeecCCcceeCCCCEEEEECCCCCCHHHHHHHHcCCCcCCCCeEeecCCceEEEeCCCCCcCC
Confidence 588999999995 57899999999999999999999999999999999999999999999987 7999999999875
Q ss_pred c-cHHHHhhcCCCCC---HHHHHHHHH------------------Hh-------CCchhhhhCCCCCccccccCCCCCCH
Q 037346 435 G-KIEENILFGKEMD---RERYERVLE------------------AC-------SLKKDLEVLPFGDQTIIGERGINLSG 485 (1156)
Q Consensus 435 ~-ti~eni~~~~~~~---~~~~~~~~~------------------~~-------~l~~~~~~~~~g~~t~v~~~g~~LSg 485 (1156)
. ||.|.+.-+...- ..+++.... .. .....+..+ |.... .....+|||
T Consensus 80 ~~tv~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~e~~~~~~L~gL--g~~~~-~~~~~~LSG 156 (530)
T COG0488 80 EKTVLDYVIEGFGELRELLAELEEAYALLADPDDELLAELEALLEELDGWTLEARAEEALLGL--GFPDE-DRPVSSLSG 156 (530)
T ss_pred CccHHHHHHhhhHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHhhcccchHHHHHHHHhcC--CCCcc-cCchhhcCH
Confidence 5 9999998774310 011111110 00 001112222 22222 455678999
Q ss_pred HHHHHHHHHHhhccCCCeeeeeCCCCCcCHHHHHHHHHHHHhcCCCEEEEEccCCCcccc-CCEEEEEeCCeE-EEccCh
Q 037346 486 GQKQRIQIARPLYQDADIFLLDDPFSPVDDHTGAHLFKFCWVSSSKTVIYATHQVEFLPA-ADLILVIKDGKI-TQAGKY 563 (1156)
Q Consensus 486 GqkqRi~lAral~~~~~illlDep~s~lD~~~~~~i~~~~~~~~~~tvi~vtH~~~~~~~-~d~i~~l~~G~i-~~~g~~ 563 (1156)
|||.||+|||||..+||+|||||||++||..+..|+-+.+...+| |+|+||||.+++.. |++|+.+++|++ .+.|+|
T Consensus 157 G~r~Rv~LA~aL~~~pDlLLLDEPTNHLD~~~i~WLe~~L~~~~g-tviiVSHDR~FLd~V~t~I~~ld~g~l~~y~Gny 235 (530)
T COG0488 157 GWRRRVALARALLEEPDLLLLDEPTNHLDLESIEWLEDYLKRYPG-TVIVVSHDRYFLDNVATHILELDRGKLTPYKGNY 235 (530)
T ss_pred HHHHHHHHHHHHhcCCCEEEEcCCCcccCHHHHHHHHHHHHhCCC-cEEEEeCCHHHHHHHhhheEEecCCceeEecCCH
Confidence 999999999999999999999999999999999999888766777 99999999999986 999999999987 488888
Q ss_pred HHHHhcCcchHHHHHhhhhhccCCCCCCCCCcccccccccCCCCCCCcccchhcccccCCCCcccccCccCcchhHHHHh
Q 037346 564 SDILNSGTDFMELVGAHKQALSGLDSIDRGPVSERKSINKENDGTSTTNEIVNKEENKNFQSDDEAALPKGQLVQEEERE 643 (1156)
Q Consensus 564 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~ 643 (1156)
+.+++......+......+ + .+++.+
T Consensus 236 ~~~~~~r~~~~~~~~~~~~----------------------------------------------~-------~~~~~~- 261 (530)
T COG0488 236 SSYLEQKAERLRQEAAAYE----------------------------------------------K-------QQKELA- 261 (530)
T ss_pred HHHHHHHHHHHHHHHHHHH----------------------------------------------H-------HHHHHH-
Confidence 8776432110000000000 0 000000
Q ss_pred cCcccHHHHHHHHHHhccchHHHHHHHHHHHHHHHHhhhhhhhhhccccccccCCCCCchhhHHHHHHHHHHHHHHHHHH
Q 037346 644 KGKVGFSVYWKYMTTAYGGVLVPFILLAQIIFQIFQIGSNYWMAWATPVAKDVNPAVGASTLIIVYVGAGYKTATQLFNK 723 (1156)
Q Consensus 644 ~g~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 723 (1156)
....++
T Consensus 262 -------~~~~~i------------------------------------------------------------------- 267 (530)
T COG0488 262 -------KEQEWI------------------------------------------------------------------- 267 (530)
T ss_pred -------HHHHHH-------------------------------------------------------------------
Confidence 000000
Q ss_pred HHHHhccccccccccccccchhhhhcccccccchhhhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 037346 724 MHVCIFRAPMYFFDSTPSGRILNRVSENVKWADQSAADMDIPYDIGAFAFSMIQLLGIIVVMSLVAWQVLIVFVPVIATF 803 (1156)
Q Consensus 724 l~~~ll~~p~~ff~~~~~G~il~R~s~d~~~~d~~~~d~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~ 803 (1156)
+|+. .
T Consensus 268 ----------------------~r~~-----~------------------------------------------------ 272 (530)
T COG0488 268 ----------------------RRGK-----A------------------------------------------------ 272 (530)
T ss_pred ----------------------HHHH-----h------------------------------------------------
Confidence 0000 0
Q ss_pred HHHHHHHHHHHHHHHHHHhHhhChHHHHHHhhccchhhhhhcchHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Q 037346 804 IWYQQYYITSTRELSRLIGVCKAPVIQQFSETISGSTTIRSLDQELRFRDTNMKLIDEYSRPKFHIAGAMEWLRFCIDML 883 (1156)
Q Consensus 804 ~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~e~l~Gi~tIra~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 883 (1156)
...+.++.
T Consensus 273 ------~~~~~k~a------------------------------------------------------------------ 280 (530)
T COG0488 273 ------AASKAKKA------------------------------------------------------------------ 280 (530)
T ss_pred ------ccchHHHH------------------------------------------------------------------
Confidence 00000000
Q ss_pred HHHHHHHHHHHHHHcCCCccchHHHHHHHhHHHHHHHHh--h------------cCCCCCc----ccccCCCCCCCCCCC
Q 037346 884 SSITFAFSLAFLISVPNGIIHPYKNLERKIISVERILQC--A------------CIPSEPA----LVIEATKPNNSRPSH 945 (1156)
Q Consensus 884 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~Ri~~~--~------------~~~~e~~----~~~~~~~~~~~~p~~ 945 (1156)
+.....++++..- . ..++++. ...+..+....+. .
T Consensus 281 --------------------------~sr~k~l~k~~~~~~~~~~~~~~~~~~~~f~~~~~~~g~~vl~~~~~~~~y~-~ 333 (530)
T COG0488 281 --------------------------KSRIKRLEKLEARLAEERPVEEGKPLAFRFPPPGKRLGKLVLEFENVSKGYD-G 333 (530)
T ss_pred --------------------------HHHHHHHHHHHhhhhhcccccccccceeeccCCcccCCCeeEEEeccccccC-C
Confidence 0000001111100 0 0000000 0000011111111 1
Q ss_pred CeEEEEEEEEEEcCCCCceeeCCCCCCHHHHHHHHhhcccCCCceEEEcCeeCCCCChHHHhhcCeeecccc-ccc-ccc
Q 037346 946 GEVNIRHLQVRYAPNLPLVLRGRTGSGKSTLIQTLFRIVESTAGHILIDGKDISLIGLHDLRTRLSIIPQDP-TMF-EGT 1023 (1156)
Q Consensus 946 g~I~~~~Vsf~Y~~~~~~vL~G~SGsGKSTL~~lL~rl~~p~~G~I~idG~di~~i~~~~LR~~i~~VpQdp-~LF-~gT 1023 (1156)
+...|++++|...+++.++|.||+|+|||||+++|.|-..|.+|+|.++- .-++||.+|+. .++ +.|
T Consensus 334 ~~~l~~~~s~~i~~g~riaiiG~NG~GKSTLlk~l~g~~~~~~G~v~~g~-----------~v~igyf~Q~~~~l~~~~t 402 (530)
T COG0488 334 GRLLLKDLSFRIDRGDRIAIVGPNGAGKSTLLKLLAGELGPLSGTVKVGE-----------TVKIGYFDQHRDELDPDKT 402 (530)
T ss_pred CceeecCceEEecCCCEEEEECCCCCCHHHHHHHHhhhcccCCceEEeCC-----------ceEEEEEEehhhhcCccCc
Confidence 24566666666667777889999999999999999999999999999863 13599999998 344 338
Q ss_pred chhccCCCC-CCCHHHHHHHHHHcCCChHHHhhcCCcccc--------ccccccCCCEEEEecCCcCCCHHHHHHHHHHH
Q 037346 1024 TRSNLDPLE-EHADEQIWEALDKCQLGDEVRKKKGKLDSQ--------GRVLLKKSKVLVLDEATASVDTATDNQIQQTL 1094 (1156)
Q Consensus 1024 Ir~Nl~~~~-~~~deei~~al~~~~l~~~i~~lp~gl~s~--------ARALLr~~~ILiLDEaTS~LD~~te~~I~~~l 1094 (1156)
+-|++.... ...+.+++..|.+.++...-...|-+-.|+ |+.++.+|.+|||||||.+||.+|-..+.++|
T Consensus 403 ~~d~l~~~~~~~~e~~~r~~L~~f~F~~~~~~~~v~~LSGGEk~Rl~La~ll~~~pNvLiLDEPTNhLDi~s~~aLe~aL 482 (530)
T COG0488 403 VLEELSEGFPDGDEQEVRAYLGRFGFTGEDQEKPVGVLSGGEKARLLLAKLLLQPPNLLLLDEPTNHLDIESLEALEEAL 482 (530)
T ss_pred HHHHHHhhCccccHHHHHHHHHHcCCChHHHhCchhhcCHhHHHHHHHHHHhccCCCEEEEcCCCccCCHHHHHHHHHHH
Confidence 888886544 333788999999999987666555555555 67888999999999999999999999999999
Q ss_pred HHhcCCceEEEeecCcccccc-cCEEEEEeCcEEeee-cChhHHhcC
Q 037346 1095 RQHFSDCTVVTIAHRITSVLD-SAMVLLLNHGLIKEY-DSPTKLLEN 1139 (1156)
Q Consensus 1095 ~~~~~~~TvI~IaHrl~ti~~-~D~I~Vl~~G~IvE~-G~~~eLl~~ 1139 (1156)
.++ ..|||+|+|+-..+.. |++|+++++ ++.++ |.+++..+.
T Consensus 483 ~~f--~Gtvl~VSHDr~Fl~~va~~i~~~~~-~~~~~~g~y~~y~~~ 526 (530)
T COG0488 483 LDF--EGTVLLVSHDRYFLDRVATRIWLVED-KVEEFEGGYEDYLEQ 526 (530)
T ss_pred HhC--CCeEEEEeCCHHHHHhhcceEEEEcC-ceeEcCCCHHHHHHh
Confidence 987 6799999999998876 899999999 88887 888887754
|
|
| >PLN03073 ABC transporter F family; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-52 Score=514.97 Aligned_cols=173 Identities=15% Similarity=0.218 Sum_probs=136.3
Q ss_pred EEEEEEEEcCCCCceeeCCCCCCHHHHHHHHhhcccCCCceEEEcCeeCCCCChHHHhhcCeeeccccccccccchhccC
Q 037346 950 IRHLQVRYAPNLPLVLRGRTGSGKSTLIQTLFRIVESTAGHILIDGKDISLIGLHDLRTRLSIIPQDPTMFEGTTRSNLD 1029 (1156)
Q Consensus 950 ~~~Vsf~Y~~~~~~vL~G~SGsGKSTL~~lL~rl~~p~~G~I~idG~di~~i~~~~LR~~i~~VpQdp~LF~gTIr~Nl~ 1029 (1156)
|+|++|...+++.++|.|+||||||||+++|+|+.+|++|+|.+++ +.+|+|+||++. ..-++.+|..
T Consensus 525 l~~vsl~i~~Ge~i~LvG~NGsGKSTLLk~L~Gll~p~~G~I~~~~-----------~~~igyv~Q~~~-~~l~~~~~~~ 592 (718)
T PLN03073 525 FKNLNFGIDLDSRIAMVGPNGIGKSTILKLISGELQPSSGTVFRSA-----------KVRMAVFSQHHV-DGLDLSSNPL 592 (718)
T ss_pred EeccEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCceEEECC-----------ceeEEEEecccc-ccCCcchhHH
Confidence 3344444444555677899999999999999999999999999875 347999999973 2234555521
Q ss_pred -----CCCCCCHHHHHHHHHHcCCCh-HHHhhcCCcccc-------ccccccCCCEEEEecCCcCCCHHHHHHHHHHHHH
Q 037346 1030 -----PLEEHADEQIWEALDKCQLGD-EVRKKKGKLDSQ-------GRVLLKKSKVLVLDEATASVDTATDNQIQQTLRQ 1096 (1156)
Q Consensus 1030 -----~~~~~~deei~~al~~~~l~~-~i~~lp~gl~s~-------ARALLr~~~ILiLDEaTS~LD~~te~~I~~~l~~ 1096 (1156)
......++++.++|+..++.+ .....|..|..+ |||++++|++|||||||++||+.+...+.+.|.+
T Consensus 593 ~~~~~~~~~~~~~~i~~~L~~~gl~~~~~~~~~~~LSgGqkqRvaLAraL~~~p~lLLLDEPT~~LD~~s~~~l~~~L~~ 672 (718)
T PLN03073 593 LYMMRCFPGVPEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHILLLDEPSNHLDLDAVEALIQGLVL 672 (718)
T ss_pred HHHHHhcCCCCHHHHHHHHHHCCCChHHhcCCccccCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHH
Confidence 112345778999999999975 445555555443 8999999999999999999999999999999987
Q ss_pred hcCCceEEEeecCcccccc-cCEEEEEeCcEEe-eecChhHH
Q 037346 1097 HFSDCTVVTIAHRITSVLD-SAMVLLLNHGLIK-EYDSPTKL 1136 (1156)
Q Consensus 1097 ~~~~~TvI~IaHrl~ti~~-~D~I~Vl~~G~Iv-E~G~~~eL 1136 (1156)
. +.|||+|||++..+.. ||+|++|++|+|+ ..|++++.
T Consensus 673 ~--~gtvIivSHd~~~i~~~~drv~~l~~G~i~~~~g~~~~~ 712 (718)
T PLN03073 673 F--QGGVLMVSHDEHLISGSVDELWVVSEGKVTPFHGTFHDY 712 (718)
T ss_pred c--CCEEEEEECCHHHHHHhCCEEEEEECCEEEEeCCCHHHH
Confidence 5 3599999999998875 9999999999998 56877664
|
|
| >PLN03140 ABC transporter G family member; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.9e-52 Score=546.44 Aligned_cols=188 Identities=23% Similarity=0.307 Sum_probs=154.6
Q ss_pred CCccccceEEeeCCeEEEEEcCCCCChHHHHHHHhCCCCCC---CcEEEEcCe----------EEEEecCCcCC-CccHH
Q 037346 373 NPTLRNINLKVFHGMRVAVCGTVGSGKSSCLSCILGGVPKE---SGIIRLCGT----------KAYVAQSPWIQ-SGKIE 438 (1156)
Q Consensus 373 ~~~l~~i~l~i~~g~~~~ivG~~GsGKSTll~~i~g~~~~~---~G~i~~~g~----------~~~v~Q~~~~~-~~ti~ 438 (1156)
+.+|+|+|+.|++|++++|+|||||||||||++|+|.++|+ +|+|.++|. ++||+|++.++ ..||+
T Consensus 178 ~~IL~~vs~~i~~Ge~~~llGpnGSGKSTLLk~LaG~l~~~~~~~G~I~~nG~~~~~~~~~~~i~yv~Q~d~~~~~lTV~ 257 (1470)
T PLN03140 178 LTILKDASGIIKPSRMTLLLGPPSSGKTTLLLALAGKLDPSLKVSGEITYNGYRLNEFVPRKTSAYISQNDVHVGVMTVK 257 (1470)
T ss_pred ceeccCCeEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEechhhcccceeEEecccccCCCcCcHH
Confidence 56899999999999999999999999999999999999998 999999883 69999998765 46999
Q ss_pred HHhhcCCC-------CC-------HH---------HH------------------HHHHHHhCCchhhhhCCCCCccccc
Q 037346 439 ENILFGKE-------MD-------RE---------RY------------------ERVLEACSLKKDLEVLPFGDQTIIG 477 (1156)
Q Consensus 439 eni~~~~~-------~~-------~~---------~~------------------~~~~~~~~l~~~~~~~~~g~~t~v~ 477 (1156)
||+.|+.. ++ ++ ++ +.+++..+| .+..+|.||
T Consensus 258 EtL~f~a~~~~~~~~~~~~~~~~~~ek~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~L~~lGL-------~~~~~t~vg 330 (1470)
T PLN03140 258 ETLDFSARCQGVGTRYDLLSELARREKDAGIFPEAEVDLFMKATAMEGVKSSLITDYTLKILGL-------DICKDTIVG 330 (1470)
T ss_pred HHHHHHHHhcCCCCcccchhhcCHHHHhccCCCchhhHHHHHHhhhhcchhhHHHHHHHHHcCC-------ccccCceeC
Confidence 99988421 00 11 11 122222232 334567776
Q ss_pred cC-CCCCCHHHHHHHHHHHhhccCCCeeeeeCCCCCcCHHHHHHHHHHHHh---cCCCEEEEEccCCC-cc-ccCCEEEE
Q 037346 478 ER-GINLSGGQKQRIQIARPLYQDADIFLLDDPFSPVDDHTGAHLFKFCWV---SSSKTVIYATHQVE-FL-PAADLILV 551 (1156)
Q Consensus 478 ~~-g~~LSgGqkqRi~lAral~~~~~illlDep~s~lD~~~~~~i~~~~~~---~~~~tvi~vtH~~~-~~-~~~d~i~~ 551 (1156)
+. ...|||||||||+|||+++.+|++++|||||++||+.++.++.+.+.. ..|+|+|+++|++. .+ ..+|+|++
T Consensus 331 ~~~~rglSGGerkRVsia~aL~~~p~vlllDEPTsGLDs~t~~~i~~~Lr~la~~~g~Tviis~Hqp~~~i~~lfD~vil 410 (1470)
T PLN03140 331 DEMIRGISGGQKKRVTTGEMIVGPTKTLFMDEISTGLDSSTTYQIVKCLQQIVHLTEATVLMSLLQPAPETFDLFDDIIL 410 (1470)
T ss_pred CccccCCCcccceeeeehhhhcCCCcEEEEeCCCcCccHHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHHHHHhheEEE
Confidence 54 468999999999999999999999999999999999999999876644 25899999999974 44 56999999
Q ss_pred EeCCeEEEccChHHHH
Q 037346 552 IKDGKITQAGKYSDIL 567 (1156)
Q Consensus 552 l~~G~i~~~g~~~~l~ 567 (1156)
|++|++++.|+.+++.
T Consensus 411 L~~G~ivy~G~~~~~~ 426 (1470)
T PLN03140 411 LSEGQIVYQGPRDHIL 426 (1470)
T ss_pred eeCceEEEeCCHHHHH
Confidence 9999999999998876
|
|
| >TIGR00954 3a01203 Peroxysomal Fatty Acyl CoA Transporter (FAT) Family protei | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-50 Score=502.36 Aligned_cols=467 Identities=17% Similarity=0.168 Sum_probs=332.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCc--ccc-hh----hHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 037346 82 EILFIAILALLYTLATYVGPYLIDNFVQYLNGRQA--FEY-EG----YVL--CLSERHWFFQVQQFGIRFRATLFAMIYN 152 (1156)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~p~ll~~~i~~~~~~~~--~~~-~g----~~l--~~~~~~~~~~~~~~~~~~r~~l~~~i~~ 152 (1156)
.++..+++.++.+++.+..|++.+.+++.+...+. +.. .. +++ ++......|...++..++|..+...+.+
T Consensus 97 ~l~~~~~~~~~~t~~~l~~~~l~~~iid~l~~~~~~~f~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~r~~l~~~l~~ 176 (659)
T TIGR00954 97 LLILIAFLLVSRTYLSVYVATLDGQIESSIVRRSPRNFAWILFKWFLIAPPASFINSAIKYLLKELKLRFRVRLTRYLYS 176 (659)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46677788888899999999999999998764322 111 11 111 2222333344566667777777666666
Q ss_pred HHhcC----CccccCCCCHHHHHHHHHHHHHH---------------------HHHHHHHHHHHHH-HHHHHHHHHHHHH
Q 037346 153 KGLTL----SGQAKQGNTSGEIINLIAVDAER---------------------ALLILYKKLGLAS-IATLLATAIVMLA 206 (1156)
Q Consensus 153 k~l~l----~~~~~~~~~~g~i~nl~s~D~~~---------------------~~~ll~~~lg~~~-l~~~~~~~~~~~~ 206 (1156)
+.++- +...+++ ++|++.+++++|++. +++.++..+++.. ++.++.+++.+.+
T Consensus 177 ~~~~~~~~~~~~~~d~-~~g~~~srlt~Dv~~i~~~~~~~~~~l~~~~~~ii~~~~~L~~~~~~~l~l~~l~~~~l~~~i 255 (659)
T TIGR00954 177 KYLSGFTFYKVSNLDS-RIQNPDQLLTQDVEKFCDSVVELYSNLTKPILDVILYSFKLLTALGSVGPAGLFAYLFATGVV 255 (659)
T ss_pred HHhCCCceEEeccCCC-CCCCccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHH
Confidence 66553 3333343 579999999999987 1111222233322 2222233344444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH-----HHH----HHHHHHHHHHHHHHHHHHH--
Q 037346 207 NFPLGRLREKFQDKFMETKDRRIKATSEILRNMRILKLQGWELKKNE-----TAW----LKKSVYTEAMISFFCWGAP-- 275 (1156)
Q Consensus 207 ~~~~~~~~~~~~~~~~~~~d~r~~~~~e~l~~i~~IK~~~~e~r~~e-----~~~----~~~~~~~~~~~~~~~~~~~-- 275 (1156)
...+.+...+..++..+..++-.+..+|.++|+++||+|+.|.++.+ .+. ..+.....+....+.....
T Consensus 256 ~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~I~~~~~e~~e~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~ 335 (659)
T TIGR00954 256 LTKLRPPIGKLTVEEQALEGEYRYVHSRLIMNSEEIAFYQGNKVEKETVMSSFYRLVEHLNLIIKFRFSYGFLDNIVAKY 335 (659)
T ss_pred HHHHccchhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 55566677777888888888888999999999999999998822111 111 1111111111111111111
Q ss_pred --HHHHHHHHHHHHHh-C----CCccHHHHHH-HH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCc-
Q 037346 276 --TFVSVVTFGSCILL-G----IPLESGMILS-AL---TTFKILQEPIYYLPESISMMIQAKVPLDRIASFLCLEGLQT- 343 (1156)
Q Consensus 276 --~~~~~~~f~~~~~~-~----~~lt~~~~ft-~l---~~~~~l~~pl~~l~~~~~~~~~a~~s~~Ri~~fl~~~~~~~- 343 (1156)
..+..+..+..++. . +.+|.|..+. ++ .++..+..|+..+...+..+.++.++.+||.++++.++...
T Consensus 336 ~~~~~~~~~~g~~~~~~~~~~~g~~t~g~~~~~f~~~~~~~~~l~~~~~~l~~~~~~i~~~~~~~~Ri~~ll~~~~~~~~ 415 (659)
T TIGR00954 336 TWSAVGLVAVSIPIFDKTHPAFLEMSEEELMQEFYNNGRLLLKAADALGRLMLAGRDMTRLAGFTARVDTLLQVLDDVKS 415 (659)
T ss_pred HHHHHHHHHHHHHHHhcccccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 11112222222222 1 5688887654 33 34567789999999999999999999999999997532100
Q ss_pred ------cccc--c--------------CCCCCCCccEEEeeeEEEeCCCCCCCccccceEEeeCCeEEEEEcCCCCChHH
Q 037346 344 ------DVLE--K--------------MPRGNSDTAIEIIDGSFSWDFSSPNPTLRNINLKVFHGMRVAVCGTVGSGKSS 401 (1156)
Q Consensus 344 ------~~~~--~--------------~~~~~~~~~i~~~~~~f~~~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKST 401 (1156)
...+ . .......+.|+++|++|.|+. ++++|+|+||+|++||+++|+|||||||||
T Consensus 416 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~nv~~~~~~--~~~il~~isl~i~~Ge~~~IvG~nGsGKST 493 (659)
T TIGR00954 416 GNFKRPRVEEIESGREGGRNSNLVPGRGIVEYQDNGIKFENIPLVTPN--GDVLIESLSFEVPSGNHLLICGPNGCGKSS 493 (659)
T ss_pred ccccccccccccccccccccccccccccccccCCCeEEEEeeEEECCC--CCeeeecceEEECCCCEEEEECCCCCCHHH
Confidence 0000 0 000112346999999999963 347999999999999999999999999999
Q ss_pred HHHHHhCCCCCCCcEEEEcC--eEEEEecCCcCCCccHHHHhhcCC--------CCCHHHHHHHHHHhCCchhhhhCCCC
Q 037346 402 CLSCILGGVPKESGIIRLCG--TKAYVAQSPWIQSGKIEENILFGK--------EMDRERYERVLEACSLKKDLEVLPFG 471 (1156)
Q Consensus 402 ll~~i~g~~~~~~G~i~~~g--~~~~v~Q~~~~~~~ti~eni~~~~--------~~~~~~~~~~~~~~~l~~~~~~~~~g 471 (1156)
|+++|+|+++|++|+|.+++ +++||||+|+++++|++|||.++. ..++++.+++++.+++.+.++. |.|
T Consensus 494 Ll~lL~Gl~~~~~G~i~~~~~~~i~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~i~~~l~~~~l~~~~~~-~~g 572 (659)
T TIGR00954 494 LFRILGELWPVYGGRLTKPAKGKLFYVPQRPYMTLGTLRDQIIYPDSSEDMKRRGLSDKDLEQILDNVQLTHILER-EGG 572 (659)
T ss_pred HHHHHhCCCCCCCCeEeecCCCcEEEECCCCCCCCcCHHHHHhcCCChhhhhccCCCHHHHHHHHHHcCCHHHHhh-cCC
Confidence 99999999999999999875 589999999999999999999874 2456778889999999888877 889
Q ss_pred CccccccCCCCCCHHHHHHHHHHHhhccCCCeeeeeCCCCCcCHHHHHHHHHHHHhcCCCEEEEEccCCCccccCCEEEE
Q 037346 472 DQTIIGERGINLSGGQKQRIQIARPLYQDADIFLLDDPFSPVDDHTGAHLFKFCWVSSSKTVIYATHQVEFLPAADLILV 551 (1156)
Q Consensus 472 ~~t~v~~~g~~LSgGqkqRi~lAral~~~~~illlDep~s~lD~~~~~~i~~~~~~~~~~tvi~vtH~~~~~~~~d~i~~ 551 (1156)
++|..+ .+.+||||||||++||||++++|+++|||||||+||+.+++.+.+.+.. .|+|+|+|||+++.++.||++++
T Consensus 573 ~~~~~~-~~~~LSgGqkQRl~iARal~~~p~illLDEpts~LD~~~~~~l~~~l~~-~~~tvI~isH~~~~~~~~d~il~ 650 (659)
T TIGR00954 573 WSAVQD-WMDVLSGGEKQRIAMARLFYHKPQFAILDECTSAVSVDVEGYMYRLCRE-FGITLFSVSHRKSLWKYHEYLLY 650 (659)
T ss_pred cccccc-cccCCCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHH-cCCEEEEEeCchHHHHhCCEEEE
Confidence 999876 5779999999999999999999999999999999999999998776543 48999999999999989999999
Q ss_pred EeC
Q 037346 552 IKD 554 (1156)
Q Consensus 552 l~~ 554 (1156)
|+.
T Consensus 651 l~~ 653 (659)
T TIGR00954 651 MDG 653 (659)
T ss_pred EeC
Confidence 973
|
|
| >PRK13409 putative ATPase RIL; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.2e-52 Score=506.07 Aligned_cols=170 Identities=18% Similarity=0.243 Sum_probs=144.9
Q ss_pred EEEEEEEEEcCCCCceeeCCCCCCHHHHHHHHhhcccCCCceEEEcCeeCCCCChHHHhhcCeeecccccc-ccccchhc
Q 037346 949 NIRHLQVRYAPNLPLVLRGRTGSGKSTLIQTLFRIVESTAGHILIDGKDISLIGLHDLRTRLSIIPQDPTM-FEGTTRSN 1027 (1156)
Q Consensus 949 ~~~~Vsf~Y~~~~~~vL~G~SGsGKSTL~~lL~rl~~p~~G~I~idG~di~~i~~~~LR~~i~~VpQdp~L-F~gTIr~N 1027 (1156)
.|++++|..++++.++|.|+||||||||+++|+|+.+|++|+|.++ .+++|+||++.+ ++.|+++|
T Consensus 354 ~l~~~s~~i~~Geiv~l~G~NGsGKSTLlk~L~Gl~~p~~G~I~~~-------------~~i~y~~Q~~~~~~~~tv~e~ 420 (590)
T PRK13409 354 SLEVEGGEIYEGEVIGIVGPNGIGKTTFAKLLAGVLKPDEGEVDPE-------------LKISYKPQYIKPDYDGTVEDL 420 (590)
T ss_pred EEEecceEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEEe-------------eeEEEecccccCCCCCcHHHH
Confidence 4788888888888889999999999999999999999999999986 159999999875 46799999
Q ss_pred cCCCC-CC-CHHHHHHHHHHcCCChHHHhhcCCcccc-------ccccccCCCEEEEecCCcCCCHHHHHHHHHHHHHhc
Q 037346 1028 LDPLE-EH-ADEQIWEALDKCQLGDEVRKKKGKLDSQ-------GRVLLKKSKVLVLDEATASVDTATDNQIQQTLRQHF 1098 (1156)
Q Consensus 1028 l~~~~-~~-~deei~~al~~~~l~~~i~~lp~gl~s~-------ARALLr~~~ILiLDEaTS~LD~~te~~I~~~l~~~~ 1098 (1156)
+.... .. .+..+.++++..++.+.....+..|..+ ||||+++|+||||||||++||.++...+.+.|+++.
T Consensus 421 l~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~LSGGe~QRvaiAraL~~~p~llLLDEPt~~LD~~~~~~l~~~l~~l~ 500 (590)
T PRK13409 421 LRSITDDLGSSYYKSEIIKPLQLERLLDKNVKDLSGGELQRVAIAACLSRDADLYLLDEPSAHLDVEQRLAVAKAIRRIA 500 (590)
T ss_pred HHHHhhhcChHHHHHHHHHHCCCHHHHhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHH
Confidence 96531 22 2345788999999988777777666644 899999999999999999999999999999999874
Q ss_pred C--CceEEEeecCcccccc-cCEEEEEeCcEEeeecC
Q 037346 1099 S--DCTVVTIAHRITSVLD-SAMVLLLNHGLIKEYDS 1132 (1156)
Q Consensus 1099 ~--~~TvI~IaHrl~ti~~-~D~I~Vl~~G~IvE~G~ 1132 (1156)
+ ++|+|+|+|+++.+.. ||||+||+ |++...|+
T Consensus 501 ~~~g~tviivsHD~~~~~~~aDrvivl~-~~~~~~g~ 536 (590)
T PRK13409 501 EEREATALVVDHDIYMIDYISDRLMVFE-GEPGKHGH 536 (590)
T ss_pred HhCCCEEEEEeCCHHHHHHhCCEEEEEc-Ccceeeee
Confidence 3 7899999999998764 99999996 58877766
|
|
| >KOG0054 consensus Multidrug resistance-associated protein/mitoxantrone resistance protein, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-49 Score=500.46 Aligned_cols=443 Identities=20% Similarity=0.248 Sum_probs=328.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCccccCCCCHHHHHHHHHHHHHH-----H------HHHHHHHHHHHHHHHHH---H
Q 037346 134 QVQQFGIRFRATLFAMIYNKGLTLSGQAKQGNTSGEIINLIAVDAER-----A------LLILYKKLGLASIATLL---A 199 (1156)
Q Consensus 134 ~~~~~~~~~r~~l~~~i~~k~l~l~~~~~~~~~~g~i~nl~s~D~~~-----~------~~ll~~~lg~~~l~~~~---~ 199 (1156)
.....+.+.-..|-..++++.++-+...++..++|.|+|+.+.|++. . +..+...+|..++++.. +
T Consensus 881 ~~~~~~l~aS~~Lh~~ml~~Ilrapm~FFdtTP~GRILNRFSkD~~~vD~~Lp~~~~~~~~~~~~~l~~~~vi~~~~P~f 960 (1381)
T KOG0054|consen 881 LFAKGGLKASRKLHDKLLNSILRAPMSFFDTTPTGRILNRFSKDIDTVDVLLPFTLEFFLQSLLNVLGILVVISYVTPWF 960 (1381)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCcchhcCCCCccchhhhcccchHHHHHhhHHHHHHHHHHHHHHHHHHHHhhHHhHHH
Confidence 34566778888889999999999999999999999999999999987 1 11111222222221111 1
Q ss_pred HHHHHHHH---HHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHhHHHHHHHH--HH----HHHHHHHHHH
Q 037346 200 TAIVMLAN---FPLGRLREKFQDKFMET----KDRRIKATSEILRNMRILKLQGWELKKNET--AW----LKKSVYTEAM 266 (1156)
Q Consensus 200 ~~~~~~~~---~~~~~~~~~~~~~~~~~----~d~r~~~~~e~l~~i~~IK~~~~e~r~~e~--~~----~~~~~~~~~~ 266 (1156)
++.++|+. +++.+......++..+. +.--.+..+|.++|+-+|++|+.|.|=.+. .. .+......+.
T Consensus 961 li~~~pl~v~~~~~~~~Y~~tsReLkRLesitRSPi~sh~~Etl~GlsTIRAf~~~~rf~~~~~~~~D~~~~~~f~~~~a 1040 (1381)
T KOG0054|consen 961 LIAIIPLGVIYYFVQRYYLATSRELKRLESITRSPIYSHFSETLQGLSTIRAFGKEERFIQENDELIDENSRAFFLSISA 1040 (1381)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHhhhcccchHHHhHHHHhcCcceeeeccccHHHHHHHHHHhhhhHHHHHHHHHH
Confidence 11111211 22222222222222111 111246789999999999999999332111 11 1111111111
Q ss_pred HHHHHH---HH-HHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCC
Q 037346 267 ISFFCW---GA-PTFVSVVTFGSCILLGIPLESGMILSALTTFKILQEPIYYLPESISMMIQAKVPLDRIASFLCLEGLQ 342 (1156)
Q Consensus 267 ~~~~~~---~~-~~~~~~~~f~~~~~~~~~lt~~~~ft~l~~~~~l~~pl~~l~~~~~~~~~a~~s~~Ri~~fl~~~~~~ 342 (1156)
+-++.. .. ..++..+++.+.+..++..++|.+=-+++|-..+..-+..+-.....+-.-.+|.+||.+|.+.|++.
T Consensus 1041 ~RWla~Rle~ig~~~v~~~al~~vl~~~~~~~~g~vGLslsyal~lt~~l~~~vR~~~elEn~m~SVERv~eY~~~~~E~ 1120 (1381)
T KOG0054|consen 1041 NRWLAVRLELLGNLVVLIAALFAVLLPSGLISPGLVGLSLSYALQLTGLLQWLVRQSSELENNMVSVERVLEYTDIPSEA 1120 (1381)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHccCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhhHHHHHhcCCCCC
Confidence 111111 11 11111222222222233377899988888888888888888888888888999999999999965442
Q ss_pred cccc-cc--CCCCCCCccEEEeeeEEEeCCCCCCCccccceEEeeCCeEEEEEcCCCCChHHHHHHHhCCCCCCCcEEEE
Q 037346 343 TDVL-EK--MPRGNSDTAIEIIDGSFSWDFSSPNPTLRNINLKVFHGMRVAVCGTVGSGKSSCLSCILGGVPKESGIIRL 419 (1156)
Q Consensus 343 ~~~~-~~--~~~~~~~~~i~~~~~~f~~~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKSTll~~i~g~~~~~~G~i~~ 419 (1156)
+... +. .+.-+.++.|+|+|++.+|..+ ..++|+|+||+|++||++||||.+|||||||+++|-++.+|.+|+|.+
T Consensus 1121 p~~~~~~~pp~~WP~~G~I~f~~~~~RYrp~-lp~VLk~is~~I~p~eKVGIVGRTGaGKSSL~~aLFRl~e~~~G~I~I 1199 (1381)
T KOG0054|consen 1121 PLEIEESRPPPSWPSKGEIEFEDLSLRYRPN-LPLVLKGISFTIKPGEKVGIVGRTGAGKSSLILALFRLVEPAEGEILI 1199 (1381)
T ss_pred CCCCcCCCCCCCCCCCCeEEEEEeEEEeCCC-CcchhcCceEEEcCCceEEEeCCCCCCHHHHHHHHHHhcCccCCeEEE
Confidence 2111 11 1223467899999999999753 468999999999999999999999999999999999999999999999
Q ss_pred cC-------------eEEEEecCCcCCCccHHHHhhcCCCCCHHHHHHHHHHhCCchhhhhCCCCCccccccCCCCCCHH
Q 037346 420 CG-------------TKAYVAQSPWIQSGKIEENILFGKEMDRERYERVLEACSLKKDLEVLPFGDQTIIGERGINLSGG 486 (1156)
Q Consensus 420 ~g-------------~~~~v~Q~~~~~~~ti~eni~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~t~v~~~g~~LSgG 486 (1156)
|| +++.+||+|.+|+||+|.|+-=-.++++++.+++++.|+|.+.+..+|.|.++.|.|+|.|+|-|
T Consensus 1200 DgvdI~~igL~dLRsrlsIIPQdPvLFsGTvR~NLDPf~e~sD~~IW~ALe~~~Lk~~v~~~p~~Ld~~v~egG~N~SvG 1279 (1381)
T KOG0054|consen 1200 DGVDISKIGLHDLRSRLSIIPQDPVLFSGTVRFNLDPFDEYSDDEIWEALERCQLKDVVSSLPGGLDSEVSEGGENFSVG 1279 (1381)
T ss_pred cCeecccccHHHHHhcCeeeCCCCceecCccccccCcccccCHHHHHHHHHHhChHHHHhhCCcCCCceecCCCccCChH
Confidence 99 36899999999999999999877788999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhccCCCeeeeeCCCCCcCHHHHHHHHHHHHh-cCCCEEEEEccCCCccccCCEEEEEeCCeEEEccChHH
Q 037346 487 QKQRIQIARPLYQDADIFLLDDPFSPVDDHTGAHLFKFCWV-SSSKTVIYATHQVEFLPAADLILVIKDGKITQAGKYSD 565 (1156)
Q Consensus 487 qkqRi~lAral~~~~~illlDep~s~lD~~~~~~i~~~~~~-~~~~tvi~vtH~~~~~~~~d~i~~l~~G~i~~~g~~~~ 565 (1156)
|||.+||||||+++++|++|||+|+++|++|-..|-+.+.. -+++|||.|.||++++-.+|||+|||+|+|+|.|+|.+
T Consensus 1280 QRQLlCLARALLr~skILvLDEATAsVD~~TD~lIQ~tIR~~F~dcTVltIAHRl~TVmd~DrVlVld~G~v~EfdsP~~ 1359 (1381)
T KOG0054|consen 1280 QRQLLCLARALLRKSKILVLDEATASVDPETDALIQKTIREEFKDCTVLTIAHRLNTVMDSDRVLVLDAGRVVEFDSPAE 1359 (1381)
T ss_pred HHHHHHHHHHHhccCCEEEEecccccCChHHHHHHHHHHHHHhcCCeEEEEeeccchhhhcCeEEEeeCCeEeecCChHH
Confidence 99999999999999999999999999999998766444433 57999999999999999999999999999999999999
Q ss_pred HHhcCc-chHHHH
Q 037346 566 ILNSGT-DFMELV 577 (1156)
Q Consensus 566 l~~~~~-~~~~~~ 577 (1156)
|+++.. .|.+.+
T Consensus 1360 Ll~~~~S~f~~~l 1372 (1381)
T KOG0054|consen 1360 LLSDKDSLFSSLL 1372 (1381)
T ss_pred HHhCCcchHHHHH
Confidence 997644 444444
|
|
| >PRK10522 multidrug transporter membrane component/ATP-binding component; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-49 Score=488.08 Aligned_cols=410 Identities=17% Similarity=0.209 Sum_probs=301.3
Q ss_pred HHHHHHHHHHHHHHHHhccccccccccccccchhhhhcccccccchhhhcccchHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 037346 712 AGYKTATQLFNKMHVCIFRAPMYFFDSTPSGRILNRVSENVKWADQSAADMDIPYDIGAFAFSMIQLLGIIVVMSLVAWQ 791 (1156)
Q Consensus 712 ~~~~~~~~l~~~l~~~ll~~p~~ff~~~~~G~il~R~s~d~~~~d~~~~d~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 791 (1156)
.+.++..++|.++++++++.|++||+++++|++++|++ .|+..+...+. .+..++..++.+++.+++++.++|+
T Consensus 75 ~~~~~~~~lR~~l~~~ll~~~~~~~~~~~~g~~lsrl~-----~dv~~i~~~~~-~l~~~~~~~~~~i~~~~~l~~~~~~ 148 (547)
T PRK10522 75 LGHHFVYRLRSEFIKRILDTHVERIEQLGSASLLASLT-----SDVRNITIAFV-RLPELVQGIILTLGSAAYLAWLSPK 148 (547)
T ss_pred HHHHHHHHHHHHHHHHHHhCCHHHHhccCccchHHHHH-----hhHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhHH
Confidence 46688889999999999999999999999999999999 55555544332 3455667777788888889999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhChHHHHHHhhccchhhhhhcchH---HHHHHHHHHHHHHHhhHHHH
Q 037346 792 VLIVFVPVIATFIWYQQYYITSTRELSRLIGVCKAPVIQQFSETISGSTTIRSLDQE---LRFRDTNMKLIDEYSRPKFH 868 (1156)
Q Consensus 792 l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~e~l~Gi~tIra~~~e---~~~~~~~~~~~~~~~~~~~~ 868 (1156)
++++++..+++.+++..++.+..+...+...+..+...+++.|.++|+++++ ++.+ +.+.+++.+..++..+....
T Consensus 149 l~li~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~i~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 227 (547)
T PRK10522 149 MLLVTAIWMAVTIWGGFVLVARVYKHMATLRETEDKLYNDYQTVLEGRKELT-LNRERAEYVFENEYEPDAQEYRHHIIR 227 (547)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHhhh-ccHHHHHHHHHHHHhHHHHHHHhhhHH
Confidence 9887776666666565566665555555566778889999999999999996 4443 45667777666655443332
Q ss_pred HHHHHHHHHHHHHH----HHHHHH-------------HH-HHH---HHHHcCCCccchHHHHHHHhHHHHHHHHhhcCCC
Q 037346 869 IAGAMEWLRFCIDM----LSSITF-------------AF-SLA---FLISVPNGIIHPYKNLERKIISVERILQCACIPS 927 (1156)
Q Consensus 869 ~~~~~~~~~~~l~~----~~~~~~-------------~~-~~~---~~~~~~~~~~~~~~~~~~~~~s~~Ri~~~~~~~~ 927 (1156)
.............. ...+.. .. .+. .+..+.........++.....+.+|+.++.+.++
T Consensus 228 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~l~~~~~~~~~~~~a~~ri~~l~~~~~ 307 (547)
T PRK10522 228 ADTFHLSAVNWSNIMMLGAIGLVFYMANSLGWADTNVAATYSLTLLFLRTPLLSAVGALPTLLSAQVAFNKLNKLALAPY 307 (547)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 22111111100000 000000 00 000 0001111122223567778889999999865544
Q ss_pred CCcccccCCCCCCCCCCCCeEEEEEEEEEEcC--------------CCCceeeCCCCCCHHHHHHHHhhcccCCCceEEE
Q 037346 928 EPALVIEATKPNNSRPSHGEVNIRHLQVRYAP--------------NLPLVLRGRTGSGKSTLIQTLFRIVESTAGHILI 993 (1156)
Q Consensus 928 e~~~~~~~~~~~~~~p~~g~I~~~~Vsf~Y~~--------------~~~~vL~G~SGsGKSTL~~lL~rl~~p~~G~I~i 993 (1156)
+++.. ...+ -+..+.|+|+||+|+|+. |+.++|+|+||||||||+++|+|+|+|++|+|.+
T Consensus 308 ~~~~~--~~~~---~~~~~~i~~~~v~f~y~~~~~~l~~i~~~i~~G~~~aivG~sGsGKSTL~~ll~g~~~~~~G~i~~ 382 (547)
T PRK10522 308 KAEFP--RPQA---FPDWQTLELRNVTFAYQDNGFSVGPINLTIKRGELLFLIGGNGSGKSTLAMLLTGLYQPQSGEILL 382 (547)
T ss_pred ccccc--cccc---cCcCceEEEEEEEEEeCCCCeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEE
Confidence 32211 1100 112357999999999963 2334677999999999999999999999999999
Q ss_pred cCeeCCCCChHHHhhcCeeeccccccccccchhccCCCCCCCHHHHHHHHHHcCCChHHHhhcCCc-----ccc------
Q 037346 994 DGKDISLIGLHDLRTRLSIIPQDPTMFEGTTRSNLDPLEEHADEQIWEALDKCQLGDEVRKKKGKL-----DSQ------ 1062 (1156)
Q Consensus 994 dG~di~~i~~~~LR~~i~~VpQdp~LF~gTIr~Nl~~~~~~~deei~~al~~~~l~~~i~~lp~gl-----~s~------ 1062 (1156)
||+|+++++.+++|+++++|||||++|++|+++| +...++++++++++++++.+++.. +++. .|+
T Consensus 383 ~g~~~~~~~~~~~~~~i~~v~q~~~lf~~ti~~n---~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~G~~LSgGq~qRl 458 (547)
T PRK10522 383 DGKPVTAEQPEDYRKLFSAVFTDFHLFDQLLGPE---GKPANPALVEKWLERLKMAHKLEL-EDGRISNLKLSKGQKKRL 458 (547)
T ss_pred CCEECCCCCHHHHhhheEEEecChhHHHHhhccc---cCchHHHHHHHHHHHcCCchhhhc-cccCCCCCCCCHHHHHHH
Confidence 9999999999999999999999999999999999 345668899999999999988753 4331 122
Q ss_pred --ccccccCCCEEEEecCCcCCCHHHHHHHHHHHHHhc--CCceEEEeecCcccccccCEEEEEeCcEEeee-cChhHHh
Q 037346 1063 --GRVLLKKSKVLVLDEATASVDTATDNQIQQTLRQHF--SDCTVVTIAHRITSVLDSAMVLLLNHGLIKEY-DSPTKLL 1137 (1156)
Q Consensus 1063 --ARALLr~~~ILiLDEaTS~LD~~te~~I~~~l~~~~--~~~TvI~IaHrl~ti~~~D~I~Vl~~G~IvE~-G~~~eLl 1137 (1156)
|||++++|+|||||||||+||+++++.|.+.+.+.. +++|+|+||||++++..||+|+||++|+++|. |++.+-+
T Consensus 459 ~lARal~~~~~ililDE~ts~LD~~~~~~i~~~l~~~~~~~~~tvi~itH~~~~~~~~d~i~~l~~G~i~e~~~~~~~~~ 538 (547)
T PRK10522 459 ALLLALAEERDILLLDEWAADQDPHFRREFYQVLLPLLQEMGKTIFAISHDDHYFIHADRLLEMRNGQLSELTGEERDAA 538 (547)
T ss_pred HHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEEechHHHHhCCEEEEEECCEEEEecCCchhhh
Confidence 899999999999999999999999999999987654 48999999999999999999999999999987 5555544
|
|
| >COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.8e-51 Score=466.47 Aligned_cols=423 Identities=25% Similarity=0.358 Sum_probs=315.7
Q ss_pred ccEEEeeeEEEeCCCCCCCccccceEEeeCCeEEEEEcCCCCChHHHHHHHhCCCCCCCcEEEEcCe-------------
Q 037346 356 TAIEIIDGSFSWDFSSPNPTLRNINLKVFHGMRVAVCGTVGSGKSSCLSCILGGVPKESGIIRLCGT------------- 422 (1156)
Q Consensus 356 ~~i~~~~~~f~~~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKSTll~~i~g~~~~~~G~i~~~g~------------- 422 (1156)
..++++|++++|+ ..++|+|+||++.+||++|++|.||||||||+|.|.|.|+|++|+|.++|+
T Consensus 7 ~ll~~~~i~K~Fg---gV~AL~~v~l~v~~GEV~aL~GeNGAGKSTLmKiLsGv~~p~~G~I~~~G~~~~~~sp~~A~~~ 83 (500)
T COG1129 7 PLLELRGISKSFG---GVKALDGVSLTVRPGEVHALLGENGAGKSTLMKILSGVYPPDSGEILIDGKPVAFSSPRDALAA 83 (500)
T ss_pred ceeeeecceEEcC---CceeeccceeEEeCceEEEEecCCCCCHHHHHHHHhCcccCCCceEEECCEEccCCCHHHHHhC
Confidence 3589999999997 568999999999999999999999999999999999999999999999995
Q ss_pred -EEEEecCCcCC-CccHHHHhhcCCCC-------CHH----HHHHHHHHhCCchhhhhCCCCCccccccCCCCCCHHHHH
Q 037346 423 -KAYVAQSPWIQ-SGKIEENILFGKEM-------DRE----RYERVLEACSLKKDLEVLPFGDQTIIGERGINLSGGQKQ 489 (1156)
Q Consensus 423 -~~~v~Q~~~~~-~~ti~eni~~~~~~-------~~~----~~~~~~~~~~l~~~~~~~~~g~~t~v~~~g~~LSgGqkq 489 (1156)
|+.|+|++.++ +.||.|||.+|++. |.. +.+++++..++..+ ......+||+||||
T Consensus 84 GI~~V~QEl~L~p~LsVaeNifLgre~~~~~g~id~~~m~~~A~~~l~~lg~~~~-----------~~~~v~~LsiaqrQ 152 (500)
T COG1129 84 GIATVHQELSLVPNLSVAENIFLGREPTRRFGLIDRKAMRRRARELLARLGLDID-----------PDTLVGDLSIAQRQ 152 (500)
T ss_pred CcEEEeechhccCCccHHHHhhcccccccCCCccCHHHHHHHHHHHHHHcCCCCC-----------hhhhhhhCCHHHHH
Confidence 68999999875 56999999998753 222 33344444444311 23445679999999
Q ss_pred HHHHHHhhccCCCeeeeeCCCCCcCHHHHHHHHHHHHh--cCCCEEEEEccCCCccc-cCCEEEEEeCCeEEEccCh-HH
Q 037346 490 RIQIARPLYQDADIFLLDDPFSPVDDHTGAHLFKFCWV--SSSKTVIYATHQVEFLP-AADLILVIKDGKITQAGKY-SD 565 (1156)
Q Consensus 490 Ri~lAral~~~~~illlDep~s~lD~~~~~~i~~~~~~--~~~~tvi~vtH~~~~~~-~~d~i~~l~~G~i~~~g~~-~~ 565 (1156)
-|+||||+..+++|+|||||||+|+....+.+|+.+.. .+|.++|+|||+++.+. .||+|.||+||+.+..++. .+
T Consensus 153 ~VeIArAl~~~arllIlDEPTaaLt~~E~~~Lf~~ir~Lk~~Gv~ii~ISHrl~Ei~~i~DritVlRDG~~v~~~~~~~~ 232 (500)
T COG1129 153 MVEIARALSFDARVLILDEPTAALTVKETERLFDLIRRLKAQGVAIIYISHRLDEVFEIADRITVLRDGRVVGTRPTAAE 232 (500)
T ss_pred HHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEcCcHHHHHHhcCEEEEEeCCEEeeecccccC
Confidence 99999999999999999999999999999999987644 67999999999999875 5999999999999865431 11
Q ss_pred HHhcCcchHHHHHhhhhhccCCCCCCCCCcccccccccCCCCCCCcccchhcccccCCCCcccccCccCcchhHHHHhcC
Q 037346 566 ILNSGTDFMELVGAHKQALSGLDSIDRGPVSERKSINKENDGTSTTNEIVNKEENKNFQSDDEAALPKGQLVQEEEREKG 645 (1156)
Q Consensus 566 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~g 645 (1156)
+-. .+++
T Consensus 233 ~~~-----~~lv-------------------------------------------------------------------- 239 (500)
T COG1129 233 TSE-----DELV-------------------------------------------------------------------- 239 (500)
T ss_pred CCH-----HHHH--------------------------------------------------------------------
Confidence 000 0000
Q ss_pred cccHHHHHHHHHHhccchHHHHHHHHHHHHHHHHhhhhhhhhhccccccccCCCCCchhhHHHHHHHHHHHHHHHHHHHH
Q 037346 646 KVGFSVYWKYMTTAYGGVLVPFILLAQIIFQIFQIGSNYWMAWATPVAKDVNPAVGASTLIIVYVGAGYKTATQLFNKMH 725 (1156)
Q Consensus 646 ~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~ 725 (1156)
...
T Consensus 240 -----------~~M------------------------------------------------------------------ 242 (500)
T COG1129 240 -----------RLM------------------------------------------------------------------ 242 (500)
T ss_pred -----------HHh------------------------------------------------------------------
Confidence 000
Q ss_pred HHhccccccccccccccchhhhhcccccccchhhhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 037346 726 VCIFRAPMYFFDSTPSGRILNRVSENVKWADQSAADMDIPYDIGAFAFSMIQLLGIIVVMSLVAWQVLIVFVPVIATFIW 805 (1156)
Q Consensus 726 ~~ll~~p~~ff~~~~~G~il~R~s~d~~~~d~~~~d~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~ 805 (1156)
.|+ +..
T Consensus 243 ---------------vGr------------~~~----------------------------------------------- 248 (500)
T COG1129 243 ---------------VGR------------ELE----------------------------------------------- 248 (500)
T ss_pred ---------------hCc------------chh-----------------------------------------------
Confidence 000 000
Q ss_pred HHHHHHHHHHHHHHHHhHhhChHHHHHHhhccchhhhhhcchHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Q 037346 806 YQQYYITSTRELSRLIGVCKAPVIQQFSETISGSTTIRSLDQELRFRDTNMKLIDEYSRPKFHIAGAMEWLRFCIDMLSS 885 (1156)
Q Consensus 806 ~~~~~~~~~~~~~~~~~~~~s~~~~~~~e~l~Gi~tIra~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 885 (1156)
..
T Consensus 249 -------------~~----------------------------------------------------------------- 250 (500)
T COG1129 249 -------------DL----------------------------------------------------------------- 250 (500)
T ss_pred -------------hh-----------------------------------------------------------------
Confidence 00
Q ss_pred HHHHHHHHHHHHcCCCccchHHHHHHHhHHHHHHHHhhcCCCCCcccccCCCCCCCCCCCCeEEEEEEEEEEcCCCCcee
Q 037346 886 ITFAFSLAFLISVPNGIIHPYKNLERKIISVERILQCACIPSEPALVIEATKPNNSRPSHGEVNIRHLQVRYAPNLPLVL 965 (1156)
Q Consensus 886 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~Ri~~~~~~~~e~~~~~~~~~~~~~~p~~g~I~~~~Vsf~Y~~~~~~vL 965 (1156)
.+.. . ...+.++.... ..+...+ .|+||||.-++++-+.|
T Consensus 251 ------------~~~~--~------------------~~~~~~~~l~v------~~l~~~~--~~~dvSf~vr~GEIlGi 290 (500)
T COG1129 251 ------------FPEP--P------------------EEGIGEPVLEV------RNLSGGG--KVRDVSFTVRAGEILGI 290 (500)
T ss_pred ------------cccc--c------------------ccCCCCcEEEE------ecCCCCC--ceeCceeEEeCCcEEEE
Confidence 0000 0 00000000000 0111111 68999999999999899
Q ss_pred eCCCCCCHHHHHHHHhhcccCCCceEEEcCeeCCCCC-hHHHhhcCeeeccccc----cccccchhccCCC--C------
Q 037346 966 RGRTGSGKSTLIQTLFRIVESTAGHILIDGKDISLIG-LHDLRTRLSIIPQDPT----MFEGTTRSNLDPL--E------ 1032 (1156)
Q Consensus 966 ~G~SGsGKSTL~~lL~rl~~p~~G~I~idG~di~~i~-~~~LR~~i~~VpQdp~----LF~gTIr~Nl~~~--~------ 1032 (1156)
-|-=|||+|-++.+|+|..++.+|+|.+||.++.--+ .+..+..|+|||-|-- +..-||++|+... .
T Consensus 291 aGLvGaGRTEl~~~lfG~~~~~~G~i~l~G~~v~~~sp~~Ai~~Gi~~v~EDRk~~Gl~l~~sI~~Ni~l~~l~~~~~~~ 370 (500)
T COG1129 291 AGLVGAGRTELARALFGARPASSGEILLDGKPVRIRSPRDAIKAGIAYVPEDRKSEGLVLDMSIAENITLASLRRFSRRG 370 (500)
T ss_pred eccccCCHHHHHHHHhCCCcCCCceEEECCEEccCCCHHHHHHcCCEeCCcccccCcCcCCCcHHHheehHhhhhhcccc
Confidence 9999999999999999999999999999999887766 4478889999998763 4466999998642 1
Q ss_pred CCCH----HHHHHHHHHcCC-----ChHHHhhcCCcccc---ccccccCCCEEEEecCCcCCCHHHHHHHHHHHHHhc-C
Q 037346 1033 EHAD----EQIWEALDKCQL-----GDEVRKKKGKLDSQ---GRVLLKKSKVLVLDEATASVDTATDNQIQQTLRQHF-S 1099 (1156)
Q Consensus 1033 ~~~d----eei~~al~~~~l-----~~~i~~lp~gl~s~---ARALLr~~~ILiLDEaTS~LD~~te~~I~~~l~~~~-~ 1099 (1156)
-.+. +...+..++.++ +.-+.+|.+|-... ||.|..+|+||||||||.++|.-+.+.|.+.|+++. +
T Consensus 371 ~i~~~~e~~~~~~~~~~l~Ik~~s~~~~v~~LSGGNQQKVvlarwL~~~p~vLilDEPTRGIDVGAK~eIy~li~~lA~~ 450 (500)
T COG1129 371 LIDRRKERALAERYIRRLRIKTPSPEQPIGTLSGGNQQKVVLARWLATDPKVLILDEPTRGIDVGAKAEIYRLIRELAAE 450 (500)
T ss_pred ccChHHHHHHHHHHHHhcCcccCCccchhhcCCchhhhhHHHHHHHhcCCCEEEECCCCcCcccchHHHHHHHHHHHHHC
Confidence 1121 122333333332 23344444444332 899999999999999999999999999999999876 5
Q ss_pred CceEEEeecCccccc-ccCEEEEEeCcEEeeecChh
Q 037346 1100 DCTVVTIAHRITSVL-DSAMVLLLNHGLIKEYDSPT 1134 (1156)
Q Consensus 1100 ~~TvI~IaHrl~ti~-~~D~I~Vl~~G~IvE~G~~~ 1134 (1156)
|.+||+|+-.+..+. -||||+||.+|+|+..=+.+
T Consensus 451 G~ail~iSSElpEll~~~DRIlVm~~Gri~~e~~~~ 486 (500)
T COG1129 451 GKAILMISSELPELLGLSDRILVMREGRIVGELDRE 486 (500)
T ss_pred CCEEEEEeCChHHHHhhCCEEEEEECCEEEEEeccc
Confidence 799999999998766 79999999999999744433
|
|
| >COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-48 Score=434.78 Aligned_cols=428 Identities=22% Similarity=0.348 Sum_probs=323.0
Q ss_pred ccEEEeeeEEEeCCCCCCCccccceEEeeCCeEEEEEcCCCCChHHHHHHHhCCCCCCCcEEEEcCe-------------
Q 037346 356 TAIEIIDGSFSWDFSSPNPTLRNINLKVFHGMRVAVCGTVGSGKSSCLSCILGGVPKESGIIRLCGT------------- 422 (1156)
Q Consensus 356 ~~i~~~~~~f~~~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKSTll~~i~g~~~~~~G~i~~~g~------------- 422 (1156)
..++++++++.|+ +..+++||||++++||++||+|+||+|||||+++|.|+|+|++|+|.++|+
T Consensus 3 ~~l~~~~itK~f~---~~~And~V~l~v~~GeIHaLLGENGAGKSTLm~iL~G~~~P~~GeI~v~G~~v~~~sP~dA~~~ 79 (501)
T COG3845 3 PALEMRGITKRFP---GVVANDDVSLSVKKGEIHALLGENGAGKSTLMKILFGLYQPDSGEIRVDGKEVRIKSPRDAIRL 79 (501)
T ss_pred ceEEEeccEEEcC---CEEecCceeeeecCCcEEEEeccCCCCHHHHHHHHhCcccCCcceEEECCEEeccCCHHHHHHc
Confidence 3589999999997 567999999999999999999999999999999999999999999999995
Q ss_pred -EEEEecCCcCCC-ccHHHHhhcCCCC------C----HHHHHHHHHHhCCchhhhhCCCCCccccccCCCCCCHHHHHH
Q 037346 423 -KAYVAQSPWIQS-GKIEENILFGKEM------D----RERYERVLEACSLKKDLEVLPFGDQTIIGERGINLSGGQKQR 490 (1156)
Q Consensus 423 -~~~v~Q~~~~~~-~ti~eni~~~~~~------~----~~~~~~~~~~~~l~~~~~~~~~g~~t~v~~~g~~LSgGqkqR 490 (1156)
||+|.|++.+++ .||.|||.+|.+. + .++..+..+.++|.-+.+ ++...||=|||||
T Consensus 80 GIGMVhQHF~Lv~~lTV~ENiiLg~e~~~~~~~~~~~~~~~i~~l~~~yGl~vdp~-----------~~V~dLsVG~qQR 148 (501)
T COG3845 80 GIGMVHQHFMLVPTLTVAENIILGLEPSKGGLIDRRQARARIKELSERYGLPVDPD-----------AKVADLSVGEQQR 148 (501)
T ss_pred CCcEEeeccccccccchhhhhhhcCccccccccCHHHHHHHHHHHHHHhCCCCCcc-----------ceeecCCcchhHH
Confidence 699999998875 5999999998752 2 345556666666654432 4556899999999
Q ss_pred HHHHHhhccCCCeeeeeCCCCCcCHHHHHHHHHHHHh--cCCCEEEEEccCCCcccc-CCEEEEEeCCeEEEccChHHHH
Q 037346 491 IQIARPLYQDADIFLLDDPFSPVDDHTGAHLFKFCWV--SSSKTVIYATHQVEFLPA-ADLILVIKDGKITQAGKYSDIL 567 (1156)
Q Consensus 491 i~lAral~~~~~illlDep~s~lD~~~~~~i~~~~~~--~~~~tvi~vtH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~ 567 (1156)
|.|-+|||++|++||||||||.|-|...+++|+.+.. ..|+|||+|||.++.+.. ||++-||++|+++.. .+...
T Consensus 149 VEIlKaLyr~a~iLILDEPTaVLTP~E~~~lf~~l~~l~~~G~tIi~ITHKL~Ev~~iaDrvTVLR~Gkvvgt--~~~~~ 226 (501)
T COG3845 149 VEILKALYRGARLLILDEPTAVLTPQEADELFEILRRLAAEGKTIIFITHKLKEVMAIADRVTVLRRGKVVGT--VDPVA 226 (501)
T ss_pred HHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeccHHHHHHhhCeeEEEeCCeEEee--ecCCC
Confidence 9999999999999999999999999999999987644 679999999999998765 999999999998632 21100
Q ss_pred h-cCcchHHHHHhhhhhccCCCCCCCCCcccccccccCCCCCCCcccchhcccccCCCCcccccCccCcchhHHHHhcCc
Q 037346 568 N-SGTDFMELVGAHKQALSGLDSIDRGPVSERKSINKENDGTSTTNEIVNKEENKNFQSDDEAALPKGQLVQEEEREKGK 646 (1156)
Q Consensus 568 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~g~ 646 (1156)
+ ...+..+++-.+.-
T Consensus 227 ~~t~~ela~lMvG~~v---------------------------------------------------------------- 242 (501)
T COG3845 227 ETTEEELAELMVGREV---------------------------------------------------------------- 242 (501)
T ss_pred CCCHHHHHHHhcCCcc----------------------------------------------------------------
Confidence 0 00000000000000
Q ss_pred ccHHHHHHHHHHhccchHHHHHHHHHHHHHHHHhhhhhhhhhccccccccCCCCCchhhHHHHHHHHHHHHHHHHHHHHH
Q 037346 647 VGFSVYWKYMTTAYGGVLVPFILLAQIIFQIFQIGSNYWMAWATPVAKDVNPAVGASTLIIVYVGAGYKTATQLFNKMHV 726 (1156)
Q Consensus 647 ~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~ 726 (1156)
T Consensus 243 -------------------------------------------------------------------------------- 242 (501)
T COG3845 243 -------------------------------------------------------------------------------- 242 (501)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HhccccccccccccccchhhhhcccccccchhhhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 037346 727 CIFRAPMYFFDSTPSGRILNRVSENVKWADQSAADMDIPYDIGAFAFSMIQLLGIIVVMSLVAWQVLIVFVPVIATFIWY 806 (1156)
Q Consensus 727 ~ll~~p~~ff~~~~~G~il~R~s~d~~~~d~~~~d~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~ 806 (1156)
..+.. +....+|
T Consensus 243 ---~~~~~-~~~~~pg---------------------------------------------------------------- 254 (501)
T COG3845 243 ---VLRVV-KPPSTPG---------------------------------------------------------------- 254 (501)
T ss_pred ---ccccc-cCCCCCC----------------------------------------------------------------
Confidence 00000 0000000
Q ss_pred HHHHHHHHHHHHHHHhHhhChHHHHHHhhccchhhhhhcchHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Q 037346 807 QQYYITSTRELSRLIGVCKAPVIQQFSETISGSTTIRSLDQELRFRDTNMKLIDEYSRPKFHIAGAMEWLRFCIDMLSSI 886 (1156)
Q Consensus 807 ~~~~~~~~~~~~~~~~~~~s~~~~~~~e~l~Gi~tIra~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 886 (1156)
T Consensus 255 -------------------------------------------------------------------------------- 254 (501)
T COG3845 255 -------------------------------------------------------------------------------- 254 (501)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHHHHcCCCccchHHHHHHHhHHHHHHHHhhcCCCCCcccccCCCCCCCCCCCCeEEEEEEEEEEcCCCCceee
Q 037346 887 TFAFSLAFLISVPNGIIHPYKNLERKIISVERILQCACIPSEPALVIEATKPNNSRPSHGEVNIRHLQVRYAPNLPLVLR 966 (1156)
Q Consensus 887 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~Ri~~~~~~~~e~~~~~~~~~~~~~~p~~g~I~~~~Vsf~Y~~~~~~vL~ 966 (1156)
++-...+.-..+ +..|...+++|||..+.++-+.+-
T Consensus 255 -----------------------------------------~~vL~V~~L~v~---~~~~~~~v~~vs~~Vr~GEIvGIA 290 (501)
T COG3845 255 -----------------------------------------EVVLEVEDLSVK---DRRGVTAVKDVSFEVRAGEIVGIA 290 (501)
T ss_pred -----------------------------------------CeEEEEeeeEee---cCCCCceeeeeeeEEecCcEEEEE
Confidence 000000000001 123456899999999999999999
Q ss_pred CCCCCCHHHHHHHHhhcccCCCceEEEcCeeC-CCCChHHHhh-cCeeeccccc----cccccchhccCCCCC-------
Q 037346 967 GRTGSGKSTLIQTLFRIVESTAGHILIDGKDI-SLIGLHDLRT-RLSIIPQDPT----MFEGTTRSNLDPLEE------- 1033 (1156)
Q Consensus 967 G~SGsGKSTL~~lL~rl~~p~~G~I~idG~di-~~i~~~~LR~-~i~~VpQdp~----LF~gTIr~Nl~~~~~------- 1033 (1156)
|-.|-|-|-|+.+|.|+..|.+|+|.++|.|+ ...+....|+ .+++||.|.+ ..+-|+.||+-+...
T Consensus 291 GV~GNGQ~eL~eaisGlr~~~~G~I~l~G~~v~~~~~~~~~r~~G~~~VPedR~~~Glv~~~sl~eN~vL~~~~~~~~~~ 370 (501)
T COG3845 291 GVAGNGQSELVEAISGLRKPASGRILLNGKDVLGRLSPRERRRLGLAYVPEDRHGHGLVLDLSLAENLVLGRHDKKPFSR 370 (501)
T ss_pred ecCCCCHHHHHHHHhCCCccCCceEEECCEeccccCCHHHHHhcCCccCChhhccCccccCccHHHHhhhhhcccccccc
Confidence 99999999999999999999999999999997 6778887775 5999999984 557799999853211
Q ss_pred ---CCHHHHHHHH----HHc-----CCChHHHhhcCCcccc---ccccccCCCEEEEecCCcCCCHHHHHHHHHHHHHhc
Q 037346 1034 ---HADEQIWEAL----DKC-----QLGDEVRKKKGKLDSQ---GRVLLKKSKVLVLDEATASVDTATDNQIQQTLRQHF 1098 (1156)
Q Consensus 1034 ---~~deei~~al----~~~-----~l~~~i~~lp~gl~s~---ARALLr~~~ILiLDEaTS~LD~~te~~I~~~l~~~~ 1098 (1156)
..-.++.+.+ ++. +.+.-+.+|.+|-... ||-|.++|++||..+||-+||..+.+.|.+.|.+..
T Consensus 371 ~g~l~~~~i~~~a~~li~~fdVr~~~~~~~a~~LSGGNqQK~IlaREl~~~p~lLI~~qPTrGLDvgA~~~I~~~l~e~r 450 (501)
T COG3845 371 GGFLDRRAIRKFARELIEEFDVRAPSPDAPARSLSGGNQQKLILARELARRPDLLIAAQPTRGLDVGAIEFIHERLLELR 450 (501)
T ss_pred ccccCHHHHHHHHHHHHHHcCccCCCCCcchhhcCCcceehhhhhhhhccCCCEEEEcCCCccccHHHHHHHHHHHHHHH
Confidence 1123333322 222 2222334444443332 899999999999999999999999999999987764
Q ss_pred -CCceEEEeecCccccc-ccCEEEEEeCcEEeeecChhH
Q 037346 1099 -SDCTVVTIAHRITSVL-DSAMVLLLNHGLIKEYDSPTK 1135 (1156)
Q Consensus 1099 -~~~TvI~IaHrl~ti~-~~D~I~Vl~~G~IvE~G~~~e 1135 (1156)
+|+.|++|+-+|+.+. -||||.||.+|+|+....+++
T Consensus 451 ~~G~AVLLiS~dLDEil~lsDrIaVi~~Gri~~~~~~~~ 489 (501)
T COG3845 451 DAGKAVLLISEDLDEILELSDRIAVIYEGRIVGIVPPEE 489 (501)
T ss_pred hcCCEEEEEehhHHHHHHhhheeeeeeCCceeccccccc
Confidence 6889999999998876 499999999999999888776
|
|
| >COG4618 ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.8e-46 Score=412.64 Aligned_cols=418 Identities=19% Similarity=0.213 Sum_probs=290.7
Q ss_pred HHHHHHHHHHHHHHHhccccccccccccccchhhhhcccccccchhhhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 037346 713 GYKTATQLFNKMHVCIFRAPMYFFDSTPSGRILNRVSENVKWADQSAADMDIPYDIGAFAFSMIQLLGIIVVMSLVAWQV 792 (1156)
Q Consensus 713 ~~~~~~~l~~~l~~~ll~~p~~ff~~~~~G~il~R~s~d~~~~d~~~~d~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l 792 (1156)
+.+.-.++..+.|...+++|.. .+..|+=..-+ .|.+.+..++...-...+...=.+-..+.+++.+.|++
T Consensus 91 g~~lD~~L~~~v~~a~~~~~l~---~~~~g~~~Q~L------rDL~qvR~Fltg~g~~A~fDaPW~P~yl~v~fl~Hp~l 161 (580)
T COG4618 91 GERLDRQLNGPVFAASFSAPLL---RRGSGDGLQPL------RDLDQVRQFLTGTGLTAFFDAPWMPLYLAVIFLFHPWL 161 (580)
T ss_pred HHHHHHHhccHHHHHHHhhHHh---hcCCCccccch------hhHHHHHHHHcCCCcchhcCCchHHHHHHHHHHHHHHH
Confidence 4444555555666666655543 23344333333 45555554443311111111112233445556666666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhChHHHHHHhhccchhhhhhcchHHHHHHHHHHHHHHHhhHHHHHHHH
Q 037346 793 LIVFVPVIATFIWYQQYYITSTRELSRLIGVCKAPVIQQFSETISGSTTIRSLDQELRFRDTNMKLIDEYSRPKFHIAGA 872 (1156)
Q Consensus 793 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~e~l~Gi~tIra~~~e~~~~~~~~~~~~~~~~~~~~~~~~ 872 (1156)
.++.+...++.+.+...-....++--+...+.......+..-+.++.++|++.|+.....++|.+....+....-...-.
T Consensus 162 G~~a~~ga~iLv~la~ln~~~t~~p~~eA~~~~~~~~~~~~a~~RNAEvi~AMGM~~~l~~rW~~~~~~~L~~~~~asd~ 241 (580)
T COG4618 162 GLIALAGAIILVVLALLNERATRKPLKEASEASIRANQLADATLRNAEVIEAMGMLGNLAKRWGRFNAAYLSAQERASDR 241 (580)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHhhhHHHHHHhcccHHHHHHHHHHHHHHHHHHHHhHHH
Confidence 55444333333322222222233333334445556677888899999999999999988888887766655444332222
Q ss_pred H-------HHHHHHHHHHHH---------------HHHHHHHHH--HHHcCCCccchHHHHHHHhHHHHHHHHhhcCCCC
Q 037346 873 M-------EWLRFCIDMLSS---------------ITFAFSLAF--LISVPNGIIHPYKNLERKIISVERILQCACIPSE 928 (1156)
Q Consensus 873 ~-------~~~~~~l~~~~~---------------~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~s~~Ri~~~~~~~~e 928 (1156)
. +.+-..++.... +.++.++.. ...+....+..+..+..+..|..|+.+.+...++
T Consensus 242 ~~~~~~~Sr~~Rm~lQs~iLg~GA~Lvi~ge~t~G~mIA~SIl~gRaLaPid~aI~~Wkq~~~Ar~s~~Rl~~lL~~~p~ 321 (580)
T COG4618 242 NGAFGALSRALRMALQSAVLGLGAWLVIKGEITPGMMIAGSILSGRALAPIDLAIANWKQFVAARQSYKRLNELLAELPA 321 (580)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcceeeEEcCcCCcchhhHHHHHhhhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHhCcc
Confidence 2 222222221110 000000000 1111222333446677788899999998765443
Q ss_pred CcccccCCCC---------CCCCCCCCeEEEEEEEEEEcCCCCceeeCCCCCCHHHHHHHHhhcccCCCceEEEcCeeCC
Q 037346 929 PALVIEATKP---------NNSRPSHGEVNIRHLQVRYAPNLPLVLRGRTGSGKSTLIQTLFRIVESTAGHILIDGKDIS 999 (1156)
Q Consensus 929 ~~~~~~~~~~---------~~~~p~~g~I~~~~Vsf~Y~~~~~~vL~G~SGsGKSTL~~lL~rl~~p~~G~I~idG~di~ 999 (1156)
.....+.+.| ....|......+++++|+..+++-+++.||||||||||.++|.|.+.|.+|.|.+||-|++
T Consensus 322 ~~~~m~LP~P~g~L~Ve~l~~~PPg~~~pil~~isF~l~~G~~lgIIGPSgSGKSTLaR~lvG~w~p~~G~VRLDga~l~ 401 (580)
T COG4618 322 AAERMPLPAPQGALSVERLTAAPPGQKKPILKGISFALQAGEALGIIGPSGSGKSTLARLLVGIWPPTSGSVRLDGADLR 401 (580)
T ss_pred ccCCCCCCCCCceeeEeeeeecCCCCCCcceecceeEecCCceEEEECCCCccHHHHHHHHHcccccCCCcEEecchhhh
Confidence 3221111111 1112444567889999999999999999999999999999999999999999999999999
Q ss_pred CCChHHHhhcCeeeccccccccccchhccCCCC-CCCHHHHHHHHHHcCCChHHHhhcCCcccc----------------
Q 037346 1000 LIGLHDLRTRLSIIPQDPTMFEGTTRSNLDPLE-EHADEQIWEALDKCQLGDEVRKKKGKLDSQ---------------- 1062 (1156)
Q Consensus 1000 ~i~~~~LR~~i~~VpQdp~LF~gTIr~Nl~~~~-~~~deei~~al~~~~l~~~i~~lp~gl~s~---------------- 1062 (1156)
+++.++|-++|||.|||..||+|||+|||.-++ +.+++.|.+|++.++.||.|..+|+||||.
T Consensus 402 qWd~e~lG~hiGYLPQdVeLF~GTIaeNIaRf~~~~d~~kIieAA~lAgvHelIl~lP~GYdT~iG~~G~~LSgGQRQRI 481 (580)
T COG4618 402 QWDREQLGRHIGYLPQDVELFDGTIAENIARFGEEADPEKVIEAARLAGVHELILRLPQGYDTRIGEGGATLSGGQRQRI 481 (580)
T ss_pred cCCHHHhccccCcCcccceecCCcHHHHHHhccccCCHHHHHHHHHHcChHHHHHhCcCCccCccCCCCCCCCchHHHHH
Confidence 999999999999999999999999999997655 666788999999999999999999999986
Q ss_pred --ccccccCCCEEEEecCCcCCCHHHHHHHHHHHHHhc-CCceEEEeecCcccccccCEEEEEeCcEEeeecChhHHhcC
Q 037346 1063 --GRVLLKKSKVLVLDEATASVDTATDNQIQQTLRQHF-SDCTVVTIAHRITSVLDSAMVLLLNHGLIKEYDSPTKLLEN 1139 (1156)
Q Consensus 1063 --ARALLr~~~ILiLDEaTS~LD~~te~~I~~~l~~~~-~~~TvI~IaHrl~ti~~~D~I~Vl~~G~IvE~G~~~eLl~~ 1139 (1156)
||||+.+|++++||||-||||.+-|+.+.++|.+.. +++|+|+||||.+.+..+|+|+||++|++..+|+-+|.+++
T Consensus 482 aLARAlYG~P~lvVLDEPNsNLD~~GE~AL~~Ai~~~k~rG~~vvviaHRPs~L~~~Dkilvl~~G~~~~FG~r~eVLa~ 561 (580)
T COG4618 482 ALARALYGDPFLVVLDEPNSNLDSEGEAALAAAILAAKARGGTVVVIAHRPSALASVDKILVLQDGRIAAFGPREEVLAK 561 (580)
T ss_pred HHHHHHcCCCcEEEecCCCCCcchhHHHHHHHHHHHHHHcCCEEEEEecCHHHHhhcceeeeecCChHHhcCCHHHHHHH
Confidence 799999999999999999999999999999998764 68999999999999999999999999999999999999875
|
|
| >COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-47 Score=382.80 Aligned_cols=200 Identities=31% Similarity=0.444 Sum_probs=179.7
Q ss_pred cEEEeeeEEEeCCCCCCCccccceEEeeCCeEEEEEcCCCCChHHHHHHHhCCCCCCCcEEEEcCe--------------
Q 037346 357 AIEIIDGSFSWDFSSPNPTLRNINLKVFHGMRVAVCGTVGSGKSSCLSCILGGVPKESGIIRLCGT-------------- 422 (1156)
Q Consensus 357 ~i~~~~~~f~~~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKSTll~~i~g~~~~~~G~i~~~g~-------------- 422 (1156)
.|+++|++++|+ +..+|+|||++|++||.++|+|||||||||||++|.|+-+|++|+|.++|.
T Consensus 2 mi~i~~l~K~fg---~~~VLkgi~l~v~~Gevv~iiGpSGSGKSTlLRclN~LE~~~~G~I~i~g~~~~~~~~~~~~R~~ 78 (240)
T COG1126 2 MIEIKNLSKSFG---DKEVLKGISLSVEKGEVVVIIGPSGSGKSTLLRCLNGLEEPDSGSITVDGEDVGDKKDILKLRRK 78 (240)
T ss_pred eEEEEeeeEEeC---CeEEecCcceeEcCCCEEEEECCCCCCHHHHHHHHHCCcCCCCceEEECCEeccchhhHHHHHHh
Confidence 489999999996 567999999999999999999999999999999999999999999999993
Q ss_pred EEEEecCCcCCCc-cHHHHhhcCCC--------CCHHHHHHHHHHhCCchhhhhCCCCCccccccCCCCCCHHHHHHHHH
Q 037346 423 KAYVAQSPWIQSG-KIEENILFGKE--------MDRERYERVLEACSLKKDLEVLPFGDQTIIGERGINLSGGQKQRIQI 493 (1156)
Q Consensus 423 ~~~v~Q~~~~~~~-ti~eni~~~~~--------~~~~~~~~~~~~~~l~~~~~~~~~g~~t~v~~~g~~LSgGqkqRi~l 493 (1156)
+|+|+|+..||+. |+.|||.++.- ..+++..+.++..+|.+..+.+| .+|||||||||||
T Consensus 79 vGmVFQ~fnLFPHlTvleNv~lap~~v~~~~k~eA~~~A~~lL~~VGL~~ka~~yP-----------~qLSGGQqQRVAI 147 (240)
T COG1126 79 VGMVFQQFNLFPHLTVLENVTLAPVKVKKLSKAEAREKALELLEKVGLADKADAYP-----------AQLSGGQQQRVAI 147 (240)
T ss_pred cCeecccccccccchHHHHHHhhhHHHcCCCHHHHHHHHHHHHHHcCchhhhhhCc-----------cccCcHHHHHHHH
Confidence 5799999999865 99999998731 22355667888999988887777 5899999999999
Q ss_pred HHhhccCCCeeeeeCCCCCcCHHHHHHHHHHHHh--cCCCEEEEEccCCCcccc-CCEEEEEeCCeEEEccChHHHHhcC
Q 037346 494 ARPLYQDADIFLLDDPFSPVDDHTGAHLFKFCWV--SSSKTVIYATHQVEFLPA-ADLILVIKDGKITQAGKYSDILNSG 570 (1156)
Q Consensus 494 Aral~~~~~illlDep~s~lD~~~~~~i~~~~~~--~~~~tvi~vtH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~~~~ 570 (1156)
||||+-+|+++|+|||||||||+...++.+.+.. ..|.|.|+|||++.+.+. ||||++|++|+|+++|+++++..+.
T Consensus 148 ARALaM~P~vmLFDEPTSALDPElv~EVL~vm~~LA~eGmTMivVTHEM~FAr~VadrviFmd~G~iie~g~p~~~f~~p 227 (240)
T COG1126 148 ARALAMDPKVMLFDEPTSALDPELVGEVLDVMKDLAEEGMTMIIVTHEMGFAREVADRVIFMDQGKIIEEGPPEEFFDNP 227 (240)
T ss_pred HHHHcCCCCEEeecCCcccCCHHHHHHHHHHHHHHHHcCCeEEEEechhHHHHHhhheEEEeeCCEEEEecCHHHHhcCC
Confidence 9999999999999999999999999988776543 679999999999999986 9999999999999999999988643
|
|
| >TIGR00954 3a01203 Peroxysomal Fatty Acyl CoA Transporter (FAT) Family protei | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-43 Score=438.01 Aligned_cols=391 Identities=14% Similarity=0.114 Sum_probs=302.8
Q ss_pred HHHHHHHHHHHHHHhccccccccccccccchhhhhcccccccchhhhcccchHHHHHHHHHHHHHHHHHHHHHH-HHHHH
Q 037346 714 YKTATQLFNKMHVCIFRAPMYFFDSTPSGRILNRVSENVKWADQSAADMDIPYDIGAFAFSMIQLLGIIVVMSL-VAWQV 792 (1156)
Q Consensus 714 ~~~~~~l~~~l~~~ll~~p~~ff~~~~~G~il~R~s~d~~~~d~~~~d~~l~~~~~~~~~~~~~~~~~~~~~~~-~~~~l 792 (1156)
.+..+.+|++.+++....++.|||+ ++|++++|++ .|+..+...+...+..++..++.+++.++.++. .+|.+
T Consensus 168 ~~l~~~l~~~~~~~~~~~~~~~~d~-~~g~~~srlt-----~Dv~~i~~~~~~~~~~l~~~~~~ii~~~~~L~~~~~~~l 241 (659)
T TIGR00954 168 VRLTRYLYSKYLSGFTFYKVSNLDS-RIQNPDQLLT-----QDVEKFCDSVVELYSNLTKPILDVILYSFKLLTALGSVG 241 (659)
T ss_pred HHHHHHHHHHHhCCCceEEeccCCC-CCCCccccHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHH
Confidence 4566777777788878888889987 7899999999 777777777777788888888888877777775 88988
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhChHHHHHHhhccchhhhhhcchHHHHHHHHHHHHHHHhhHHHHHHHH
Q 037346 793 LIVFVPVIATFIWYQQYYITSTRELSRLIGVCKAPVIQQFSETISGSTTIRSLDQELRFRDTNMKLIDEYSRPKFHIAGA 872 (1156)
Q Consensus 793 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~e~l~Gi~tIra~~~e~~~~~~~~~~~~~~~~~~~~~~~~ 872 (1156)
+++++.++++..++.+++.+..+.+.+......+.+.+.+.|.++|+++||+|+.|+.+.+++.+..++..+........
T Consensus 242 ~l~~l~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~I~~~~~e~~e~~~~~~~~~~l~~~~~~~~~~ 321 (659)
T TIGR00954 242 PAGLFAYLFATGVVLTKLRPPIGKLTVEEQALEGEYRYVHSRLIMNSEEIAFYQGNKVEKETVMSSFYRLVEHLNLIIKF 321 (659)
T ss_pred HHHHHHHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88877777788888888888888888888899999999999999999999999999999999999888888777766666
Q ss_pred HHHHHHHHHHHHHHH---H-HHHHHH-HH------------------------------HcCCCccchHHHHHHHhHHHH
Q 037346 873 MEWLRFCIDMLSSIT---F-AFSLAF-LI------------------------------SVPNGIIHPYKNLERKIISVE 917 (1156)
Q Consensus 873 ~~~~~~~l~~~~~~~---~-~~~~~~-~~------------------------------~~~~~~~~~~~~~~~~~~s~~ 917 (1156)
..++....+++.... + .+.... .+ .+.........++.....+.+
T Consensus 322 ~~~~~~~~~~i~~~~~~~~~~~~~g~~~~~~~~~~~g~~t~g~~~~~f~~~~~~~~~l~~~~~~l~~~~~~i~~~~~~~~ 401 (659)
T TIGR00954 322 RFSYGFLDNIVAKYTWSAVGLVAVSIPIFDKTHPAFLEMSEEELMQEFYNNGRLLLKAADALGRLMLAGRDMTRLAGFTA 401 (659)
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 655555544432210 0 000000 00 000111122256777888999
Q ss_pred HHHHhhcCCCCCcc------cccC-CC-----------C--CCCCCCCCeEEEEEEEEEEcCC--------------CCc
Q 037346 918 RILQCACIPSEPAL------VIEA-TK-----------P--NNSRPSHGEVNIRHLQVRYAPN--------------LPL 963 (1156)
Q Consensus 918 Ri~~~~~~~~e~~~------~~~~-~~-----------~--~~~~p~~g~I~~~~Vsf~Y~~~--------------~~~ 963 (1156)
|+.++.+.+++... ..+. .. + .......+.|+++||+|+|+.+ +.+
T Consensus 402 Ri~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~nv~~~~~~~~~il~~isl~i~~Ge~~ 481 (659)
T TIGR00954 402 RVDTLLQVLDDVKSGNFKRPRVEEIESGREGGRNSNLVPGRGIVEYQDNGIKFENIPLVTPNGDVLIESLSFEVPSGNHL 481 (659)
T ss_pred HHHHHHHHHHHHhcccccccccccccccccccccccccccccccccCCCeEEEEeeEEECCCCCeeeecceEEECCCCEE
Confidence 99998864332100 0000 00 0 0000123568899999988532 334
Q ss_pred eeeCCCCCCHHHHHHHHhhcccCCCceEEEcCeeCCCCChHHHhhcCeeeccccccccccchhccCCCC--------CCC
Q 037346 964 VLRGRTGSGKSTLIQTLFRIVESTAGHILIDGKDISLIGLHDLRTRLSIIPQDPTMFEGTTRSNLDPLE--------EHA 1035 (1156)
Q Consensus 964 vL~G~SGsGKSTL~~lL~rl~~p~~G~I~idG~di~~i~~~~LR~~i~~VpQdp~LF~gTIr~Nl~~~~--------~~~ 1035 (1156)
+|.|+||||||||+++|+|+++|++|+|.+|+ |+++++|||+|.+|++|++|||.+.. ..+
T Consensus 482 ~IvG~nGsGKSTLl~lL~Gl~~~~~G~i~~~~-----------~~~i~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~ 550 (659)
T TIGR00954 482 LICGPNGCGKSSLFRILGELWPVYGGRLTKPA-----------KGKLFYVPQRPYMTLGTLRDQIIYPDSSEDMKRRGLS 550 (659)
T ss_pred EEECCCCCCHHHHHHHHhCCCCCCCCeEeecC-----------CCcEEEECCCCCCCCcCHHHHHhcCCChhhhhccCCC
Confidence 56699999999999999999999999999874 67899999999999999999997642 356
Q ss_pred HHHHHHHHHHcCCChHHHhhcCCcccc-----------------ccccccCCCEEEEecCCcCCCHHHHHHHHHHHHHhc
Q 037346 1036 DEQIWEALDKCQLGDEVRKKKGKLDSQ-----------------GRVLLKKSKVLVLDEATASVDTATDNQIQQTLRQHF 1098 (1156)
Q Consensus 1036 deei~~al~~~~l~~~i~~lp~gl~s~-----------------ARALLr~~~ILiLDEaTS~LD~~te~~I~~~l~~~~ 1098 (1156)
+++++++++.+++++++.. |.|+|+. |||++++|++||||||||+||+++++.+++.+++.
T Consensus 551 ~~~i~~~l~~~~l~~~~~~-~~g~~~~~~~~~~LSgGqkQRl~iARal~~~p~illLDEpts~LD~~~~~~l~~~l~~~- 628 (659)
T TIGR00954 551 DKDLEQILDNVQLTHILER-EGGWSAVQDWMDVLSGGEKQRIAMARLFYHKPQFAILDECTSAVSVDVEGYMYRLCREF- 628 (659)
T ss_pred HHHHHHHHHHcCCHHHHhh-cCCcccccccccCCCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHc-
Confidence 8899999999999999876 7776643 89999999999999999999999999999999875
Q ss_pred CCceEEEeecCcccccccCEEEEEeC
Q 037346 1099 SDCTVVTIAHRITSVLDSAMVLLLNH 1124 (1156)
Q Consensus 1099 ~~~TvI~IaHrl~ti~~~D~I~Vl~~ 1124 (1156)
++|+|+||||++++..||+|++|+.
T Consensus 629 -~~tvI~isH~~~~~~~~d~il~l~~ 653 (659)
T TIGR00954 629 -GITLFSVSHRKSLWKYHEYLLYMDG 653 (659)
T ss_pred -CCEEEEEeCchHHHHhCCEEEEEeC
Confidence 8999999999999999999999973
|
|
| >PRK14257 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-44 Score=409.92 Aligned_cols=262 Identities=24% Similarity=0.321 Sum_probs=216.9
Q ss_pred CCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCccccccCCCCCCCccEEEeeeEEEeCCC
Q 037346 291 IPLESGMILSALTTFKILQEPIYYLPESISMMIQAKVPLDRIASFLCLEGLQTDVLEKMPRGNSDTAIEIIDGSFSWDFS 370 (1156)
Q Consensus 291 ~~lt~~~~ft~l~~~~~l~~pl~~l~~~~~~~~~a~~s~~Ri~~fl~~~~~~~~~~~~~~~~~~~~~i~~~~~~f~~~~~ 370 (1156)
+.+++..+|+.+++|+.+..++..+|..... ..|+..|+..++.+..... ...+..+.|+++|++++|+.
T Consensus 23 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~--~~~~~~~~i~~~nls~~y~~- 92 (329)
T PRK14257 23 NELDAKAIYDEFQKLNKYQRAFAWLKLPKQK-------KAELKQFLNKKKTQVDLLK--EDFNHANVFEIRNFNFWYMN- 92 (329)
T ss_pred chhHHHHHHHHhhccccccchhhHHhccccc-------chhhhhccccccccccccc--CCCCcCceEEEEeeEEEecC-
Confidence 4688999999999999999998877765433 5689999876553221101 11123457999999999963
Q ss_pred CCCCccccceEEeeCCeEEEEEcCCCCChHHHHHHHhCCCC-----CCCcEEEEcC---------------eEEEEecCC
Q 037346 371 SPNPTLRNINLKVFHGMRVAVCGTVGSGKSSCLSCILGGVP-----KESGIIRLCG---------------TKAYVAQSP 430 (1156)
Q Consensus 371 ~~~~~l~~i~l~i~~g~~~~ivG~~GsGKSTll~~i~g~~~-----~~~G~i~~~g---------------~~~~v~Q~~ 430 (1156)
...++|+|+||+|++||+++|+|+||||||||+++|+|+++ |++|+|.++| .++||||+|
T Consensus 93 ~~~~~L~~is~~I~~Ge~v~IvG~~GsGKSTLl~~L~g~~~~~~~~p~~G~I~idG~~i~~~~~~~~~lr~~i~~v~q~~ 172 (329)
T PRK14257 93 RTKHVLHDLNLDIKRNKVTAFIGPSGCGKSTFLRNLNQLNDLIEGTSHEGEIYFLGTNTRSKKISSLELRTRIGMVFQKP 172 (329)
T ss_pred CCceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEccccccchHhhhccEEEEecCC
Confidence 23579999999999999999999999999999999999996 5799998866 368999999
Q ss_pred cCCCccHHHHhhcCCC---CC-HH----HHHHHHHHhCCchhhhhCCCCCccccccCCCCCCHHHHHHHHHHHhhccCCC
Q 037346 431 WIQSGKIEENILFGKE---MD-RE----RYERVLEACSLKKDLEVLPFGDQTIIGERGINLSGGQKQRIQIARPLYQDAD 502 (1156)
Q Consensus 431 ~~~~~ti~eni~~~~~---~~-~~----~~~~~~~~~~l~~~~~~~~~g~~t~v~~~g~~LSgGqkqRi~lAral~~~~~ 502 (1156)
|+|++|++|||.|+.. .+ ++ .++++++.|+|.+++ ++.++++|.+||||||||++||||++++|+
T Consensus 173 ~~~~~ti~eNi~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~l-------~~~~~~~~~~LSgGqkqRl~LARAl~~~p~ 245 (329)
T PRK14257 173 TPFEMSIFDNVAYGPRNNGINDRKILEKIVEKSLKSAALWDEV-------KDDLDKAGNALSGGQQQRLCIARAIALEPE 245 (329)
T ss_pred ccCCCcHHHHHHhHHHhcCCChHHHHHHHHHHHHHHcCCcchh-------hhhhhCCcccCCHHHHHHHHHHHHHHhCCC
Confidence 9999999999998743 22 22 266778888875543 367889999999999999999999999999
Q ss_pred eeeeeCCCCCcCHHHHHHHHHHHHh-cCCCEEEEEccCCCcccc-CCEEEEEeCCeEEEccChHHHHhc
Q 037346 503 IFLLDDPFSPVDDHTGAHLFKFCWV-SSSKTVIYATHQVEFLPA-ADLILVIKDGKITQAGKYSDILNS 569 (1156)
Q Consensus 503 illlDep~s~lD~~~~~~i~~~~~~-~~~~tvi~vtH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~~~ 569 (1156)
||||||||++||+++.+++.+.+.. .+++|+|+|||+++++.. ||+|++|++|++++.|+++++...
T Consensus 246 IlLLDEPts~LD~~~~~~i~~~i~~l~~~~Tii~iTH~l~~i~~~~Driivl~~G~i~e~g~~~~l~~~ 314 (329)
T PRK14257 246 VLLMDEPTSALDPIATAKIEELILELKKKYSIIIVTHSMAQAQRISDETVFFYQGWIEEAGETKTIFIH 314 (329)
T ss_pred EEEEeCCcccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHhcC
Confidence 9999999999999999987665533 457999999999999876 999999999999999999998754
|
|
| >COG1135 AbcC ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.7e-44 Score=377.27 Aligned_cols=203 Identities=27% Similarity=0.387 Sum_probs=178.9
Q ss_pred cEEEeeeEEEeCCC--CCCCccccceEEeeCCeEEEEEcCCCCChHHHHHHHhCCCCCCCcEEEEcC-------------
Q 037346 357 AIEIIDGSFSWDFS--SPNPTLRNINLKVFHGMRVAVCGTVGSGKSSCLSCILGGVPKESGIIRLCG------------- 421 (1156)
Q Consensus 357 ~i~~~~~~f~~~~~--~~~~~l~~i~l~i~~g~~~~ivG~~GsGKSTll~~i~g~~~~~~G~i~~~g------------- 421 (1156)
.|+++++++.|+.. +...+|+|+||+|++||+.+|+|.||+|||||+++|.++-.|++|+|.++|
T Consensus 1 mI~l~~vsK~~~~~~~~~~~al~~vsL~I~~GeI~GIIG~SGAGKSTLiR~iN~Le~PtsG~v~v~G~di~~l~~~~Lr~ 80 (339)
T COG1135 1 MIELENVSKTFGQTGTGTVTALDDVSLEIPKGEIFGIIGYSGAGKSTLLRLINLLERPTSGSVFVDGQDLTALSEAELRQ 80 (339)
T ss_pred CeEEEeeeeeeccCCCCceeeeccceEEEcCCcEEEEEcCCCCcHHHHHHHHhccCCCCCceEEEcCEecccCChHHHHH
Confidence 37899999999852 124689999999999999999999999999999999999999999999999
Q ss_pred ---eEEEEecCCcCCC-ccHHHHhhcCCCC---C----HHHHHHHHHHhCCchhhhhCCCCCccccccCCCCCCHHHHHH
Q 037346 422 ---TKAYVAQSPWIQS-GKIEENILFGKEM---D----RERYERVLEACSLKKDLEVLPFGDQTIIGERGINLSGGQKQR 490 (1156)
Q Consensus 422 ---~~~~v~Q~~~~~~-~ti~eni~~~~~~---~----~~~~~~~~~~~~l~~~~~~~~~g~~t~v~~~g~~LSgGqkqR 490 (1156)
+||+++|++.+++ .||.+||.|..+. + ++|..+.++..+|.+..+..| .+||||||||
T Consensus 81 ~R~~IGMIFQhFnLLssrTV~~NvA~PLeiag~~k~ei~~RV~elLelVgL~dk~~~yP-----------~qLSGGQKQR 149 (339)
T COG1135 81 LRQKIGMIFQHFNLLSSRTVFENVAFPLELAGVPKAEIKQRVAELLELVGLSDKADRYP-----------AQLSGGQKQR 149 (339)
T ss_pred HHhhccEEeccccccccchHHhhhhhhHhhcCCCHHHHHHHHHHHHHHcCChhhhccCc-----------hhcCcchhhH
Confidence 3799999999887 6999999997542 1 345666777778876665555 7999999999
Q ss_pred HHHHHhhccCCCeeeeeCCCCCcCHHHHHHHHHHHHh---cCCCEEEEEccCCCcccc-CCEEEEEeCCeEEEccChHHH
Q 037346 491 IQIARPLYQDADIFLLDDPFSPVDDHTGAHLFKFCWV---SSSKTVIYATHQVEFLPA-ADLILVIKDGKITQAGKYSDI 566 (1156)
Q Consensus 491 i~lAral~~~~~illlDep~s~lD~~~~~~i~~~~~~---~~~~tvi~vtH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l 566 (1156)
|+|||||..+|+|||.|||||||||++.+.|.+.+.. .-|-|+++|||.++.++. ||||.+|++|+++++|+..++
T Consensus 150 VaIARALa~~P~iLL~DEaTSALDP~TT~sIL~LL~~In~~lglTIvlITHEm~Vvk~ic~rVavm~~G~lvE~G~v~~v 229 (339)
T COG1135 150 VAIARALANNPKILLCDEATSALDPETTQSILELLKDINRELGLTIVLITHEMEVVKRICDRVAVLDQGRLVEEGTVSEV 229 (339)
T ss_pred HHHHHHHhcCCCEEEecCccccCChHHHHHHHHHHHHHHHHcCCEEEEEechHHHHHHHhhhheEeeCCEEEEeccHHHh
Confidence 9999999999999999999999999999999886643 458999999999999986 999999999999999999998
Q ss_pred HhcC
Q 037346 567 LNSG 570 (1156)
Q Consensus 567 ~~~~ 570 (1156)
....
T Consensus 230 F~~P 233 (339)
T COG1135 230 FANP 233 (339)
T ss_pred hcCc
Confidence 8654
|
|
| >COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-43 Score=369.85 Aligned_cols=185 Identities=35% Similarity=0.426 Sum_probs=165.9
Q ss_pred cEEEeeeEEEeCCCCCCCccccceEEeeCCeEEEEEcCCCCChHHHHHHHhCCCCCCCcEEEEcCe--------EEEEec
Q 037346 357 AIEIIDGSFSWDFSSPNPTLRNINLKVFHGMRVAVCGTVGSGKSSCLSCILGGVPKESGIIRLCGT--------KAYVAQ 428 (1156)
Q Consensus 357 ~i~~~~~~f~~~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKSTll~~i~g~~~~~~G~i~~~g~--------~~~v~Q 428 (1156)
.++++++++.|+. ..+|+|+||+|++||+++|+|||||||||||++|+|+.+|++|+|.++|+ ++||+|
T Consensus 3 ~l~i~~v~~~f~~---~~vl~~i~L~v~~GEfvsilGpSGcGKSTLLriiAGL~~p~~G~V~~~g~~v~~p~~~~~~vFQ 79 (248)
T COG1116 3 LLEIEGVSKSFGG---VEVLEDINLSVEKGEFVAILGPSGCGKSTLLRLIAGLEKPTSGEVLLDGRPVTGPGPDIGYVFQ 79 (248)
T ss_pred eEEEEeeEEEeCc---eEEeccceeEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCcccCCCCCCEEEEec
Confidence 4889999999973 68999999999999999999999999999999999999999999999984 699999
Q ss_pred CCcCCC-ccHHHHhhcCCCC-------CHHHHHHHHHHhCCchhhhhCCCCCccccccCCCCCCHHHHHHHHHHHhhccC
Q 037346 429 SPWIQS-GKIEENILFGKEM-------DRERYERVLEACSLKKDLEVLPFGDQTIIGERGINLSGGQKQRIQIARPLYQD 500 (1156)
Q Consensus 429 ~~~~~~-~ti~eni~~~~~~-------~~~~~~~~~~~~~l~~~~~~~~~g~~t~v~~~g~~LSgGqkqRi~lAral~~~ 500 (1156)
++.+++ -||+|||.|+.+. ..++..+.++.++|..+-+.+| .+|||||||||||||||+.+
T Consensus 80 ~~~LlPW~Tv~~NV~l~l~~~~~~~~e~~~~a~~~L~~VgL~~~~~~~P-----------~qLSGGMrQRVaiARAL~~~ 148 (248)
T COG1116 80 EDALLPWLTVLDNVALGLELRGKSKAEARERAKELLELVGLAGFEDKYP-----------HQLSGGMRQRVAIARALATR 148 (248)
T ss_pred cCcccchhhHHhhheehhhccccchHhHHHHHHHHHHHcCCcchhhcCc-----------cccChHHHHHHHHHHHHhcC
Confidence 998776 5999999998653 2356788999999988877766 68999999999999999999
Q ss_pred CCeeeeeCCCCCcCHHHHHHHHHHHHh---cCCCEEEEEccCCCcc-ccCCEEEEEeCC
Q 037346 501 ADIFLLDDPFSPVDDHTGAHLFKFCWV---SSSKTVIYATHQVEFL-PAADLILVIKDG 555 (1156)
Q Consensus 501 ~~illlDep~s~lD~~~~~~i~~~~~~---~~~~tvi~vtH~~~~~-~~~d~i~~l~~G 555 (1156)
|++|||||||+|||+.|+.++.+.+.. ..++|+++||||++.. ..+|||++|.++
T Consensus 149 P~lLLlDEPFgALDalTR~~lq~~l~~lw~~~~~TvllVTHdi~EAv~LsdRivvl~~~ 207 (248)
T COG1116 149 PKLLLLDEPFGALDALTREELQDELLRLWEETRKTVLLVTHDVDEAVYLADRVVVLSNR 207 (248)
T ss_pred CCEEEEcCCcchhhHHHHHHHHHHHHHHHHhhCCEEEEEeCCHHHHHhhhCEEEEecCC
Confidence 999999999999999999988776543 5679999999999885 569999999983
|
|
| >COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.1e-44 Score=364.78 Aligned_cols=199 Identities=30% Similarity=0.412 Sum_probs=175.3
Q ss_pred EEEeeeEEEeCCCCCCCccccceEEeeCCeEEEEEcCCCCChHHHHHHHhCCCCCCCcEEEEcCe-------------EE
Q 037346 358 IEIIDGSFSWDFSSPNPTLRNINLKVFHGMRVAVCGTVGSGKSSCLSCILGGVPKESGIIRLCGT-------------KA 424 (1156)
Q Consensus 358 i~~~~~~f~~~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKSTll~~i~g~~~~~~G~i~~~g~-------------~~ 424 (1156)
|+|+|+|+.|. ++.+++|+||+|++||+++++|||||||||+|++|.++++|++|+|+++|. +|
T Consensus 2 I~~~nvsk~y~---~~~av~~v~l~I~~gef~vliGpSGsGKTTtLkMINrLiept~G~I~i~g~~i~~~d~~~LRr~IG 78 (309)
T COG1125 2 IEFENVSKRYG---NKKAVDDVNLTIEEGEFLVLIGPSGSGKTTTLKMINRLIEPTSGEILIDGEDISDLDPVELRRKIG 78 (309)
T ss_pred ceeeeeehhcC---CceeeeeeeEEecCCeEEEEECCCCCcHHHHHHHHhcccCCCCceEEECCeecccCCHHHHHHhhh
Confidence 78999999996 568999999999999999999999999999999999999999999999993 79
Q ss_pred EEecCCcCCC-ccHHHHhhcCCC---CCH----HHHHHHHHHhCCch--hhhhCCCCCccccccCCCCCCHHHHHHHHHH
Q 037346 425 YVAQSPWIQS-GKIEENILFGKE---MDR----ERYERVLEACSLKK--DLEVLPFGDQTIIGERGINLSGGQKQRIQIA 494 (1156)
Q Consensus 425 ~v~Q~~~~~~-~ti~eni~~~~~---~~~----~~~~~~~~~~~l~~--~~~~~~~g~~t~v~~~g~~LSgGqkqRi~lA 494 (1156)
||-|..-+|+ .||.|||.+-.. +++ ++.++.++..+|++ ...+.| .+|||||+|||.+|
T Consensus 79 YviQqigLFPh~Tv~eNIa~VP~L~~w~k~~i~~r~~ELl~lvgL~p~~~~~RyP-----------~eLSGGQQQRVGv~ 147 (309)
T COG1125 79 YVIQQIGLFPHLTVAENIATVPKLLGWDKERIKKRADELLDLVGLDPSEYADRYP-----------HELSGGQQQRVGVA 147 (309)
T ss_pred hhhhhcccCCCccHHHHHHhhhhhcCCCHHHHHHHHHHHHHHhCCCHHHHhhcCc-----------hhcCcchhhHHHHH
Confidence 9999998875 599999987532 443 45667888888875 344444 78999999999999
Q ss_pred HhhccCCCeeeeeCCCCCcCHHHHHHHHHHHHh---cCCCEEEEEccCCCcc-ccCCEEEEEeCCeEEEccChHHHHhcC
Q 037346 495 RPLYQDADIFLLDDPFSPVDDHTGAHLFKFCWV---SSSKTVIYATHQVEFL-PAADLILVIKDGKITQAGKYSDILNSG 570 (1156)
Q Consensus 495 ral~~~~~illlDep~s~lD~~~~~~i~~~~~~---~~~~tvi~vtH~~~~~-~~~d~i~~l~~G~i~~~g~~~~l~~~~ 570 (1156)
|||..+|+|+|+||||+||||.++..+-+.+.. .-++|+|+||||++.. +.+|||.+|++|++++.++|++++.+.
T Consensus 148 RALAadP~ilLMDEPFgALDpI~R~~lQ~e~~~lq~~l~kTivfVTHDidEA~kLadri~vm~~G~i~Q~~~P~~il~~P 227 (309)
T COG1125 148 RALAADPPILLMDEPFGALDPITRKQLQEEIKELQKELGKTIVFVTHDIDEALKLADRIAVMDAGEIVQYDTPDEILANP 227 (309)
T ss_pred HHHhcCCCeEeecCCccccChhhHHHHHHHHHHHHHHhCCEEEEEecCHHHHHhhhceEEEecCCeEEEeCCHHHHHhCc
Confidence 999999999999999999999999988665533 4589999999999874 679999999999999999999998754
|
|
| >cd03289 ABCC_CFTR2 The CFTR subfamily domain 2 | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-42 Score=385.57 Aligned_cols=220 Identities=28% Similarity=0.356 Sum_probs=199.5
Q ss_pred cEEEeeeEEEeCCCCCCCccccceEEeeCCeEEEEEcCCCCChHHHHHHHhCCCCCCCcEEEEcC-------------eE
Q 037346 357 AIEIIDGSFSWDFSSPNPTLRNINLKVFHGMRVAVCGTVGSGKSSCLSCILGGVPKESGIIRLCG-------------TK 423 (1156)
Q Consensus 357 ~i~~~~~~f~~~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKSTll~~i~g~~~~~~G~i~~~g-------------~~ 423 (1156)
.|+++|++++|+.. +.++|+|+||+|++||+++|+|+||||||||+++|.|+++ .+|+|.++| .+
T Consensus 2 ~i~~~nls~~~~~~-~~~~l~~isl~I~~Ge~~~IvG~nGsGKSTLl~~L~gl~~-~~G~I~i~g~~i~~~~~~~lr~~i 79 (275)
T cd03289 2 QMTVKDLTAKYTEG-GNAVLENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLN-TEGDIQIDGVSWNSVPLQKWRKAF 79 (275)
T ss_pred eEEEEEEEEEeCCC-CCcceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhhhcC-CCcEEEECCEEhhhCCHHHHhhhE
Confidence 48999999999632 3579999999999999999999999999999999999998 789999998 37
Q ss_pred EEEecCCcCCCccHHHHhhcCCCCCHHHHHHHHHHhCCchhhhhCCCCCccccccCCCCCCHHHHHHHHHHHhhccCCCe
Q 037346 424 AYVAQSPWIQSGKIEENILFGKEMDRERYERVLEACSLKKDLEVLPFGDQTIIGERGINLSGGQKQRIQIARPLYQDADI 503 (1156)
Q Consensus 424 ~~v~Q~~~~~~~ti~eni~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~t~v~~~g~~LSgGqkqRi~lAral~~~~~i 503 (1156)
+|+||+|++|++|+++|+.......++++.++++.++|.+.+..+|.++++.++++|.+||||||||++||||++++|+|
T Consensus 80 ~~v~q~~~lf~~tv~~nl~~~~~~~~~~~~~~l~~~gL~~~~~~~p~~l~~~~~~~g~~LS~G~~qrl~LaRall~~p~i 159 (275)
T cd03289 80 GVIPQKVFIFSGTFRKNLDPYGKWSDEEIWKVAEEVGLKSVIEQFPGQLDFVLVDGGCVLSHGHKQLMCLARSVLSKAKI 159 (275)
T ss_pred EEECCCcccchhhHHHHhhhccCCCHHHHHHHHHHcCCHHHHHhCcccccceecCCCCCCCHHHHHHHHHHHHHhcCCCE
Confidence 99999999999999999964444667788899999999999999999999999999999999999999999999999999
Q ss_pred eeeeCCCCCcCHHHHHHHHHHHHh-cCCCEEEEEccCCCccccCCEEEEEeCCeEEEccChHHHHhcCcchHHHHH
Q 037346 504 FLLDDPFSPVDDHTGAHLFKFCWV-SSSKTVIYATHQVEFLPAADLILVIKDGKITQAGKYSDILNSGTDFMELVG 578 (1156)
Q Consensus 504 lllDep~s~lD~~~~~~i~~~~~~-~~~~tvi~vtH~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~~~~~~~~~~ 578 (1156)
+||||||++||+.+.+.+.+.+.. .+++|+|+|||+++.+..||+|++|++|++++.|+++++.+....|..++.
T Consensus 160 lllDEpts~LD~~~~~~l~~~l~~~~~~~tii~isH~~~~i~~~dri~vl~~G~i~~~g~~~~l~~~~~~~~~~~~ 235 (275)
T cd03289 160 LLLDEPSAHLDPITYQVIRKTLKQAFADCTVILSEHRIEAMLECQRFLVIEENKVRQYDSIQKLLNEKSHFKQAIS 235 (275)
T ss_pred EEEECccccCCHHHHHHHHHHHHHhcCCCEEEEEECCHHHHHhCCEEEEecCCeEeecCCHHHHhhCcHHHHHHHh
Confidence 999999999999999888776654 457999999999998888999999999999999999999986655666554
|
The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2. |
| >COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.6e-43 Score=372.53 Aligned_cols=199 Identities=32% Similarity=0.479 Sum_probs=176.4
Q ss_pred cEEEeeeEEEeCCCCCCCccccceEEeeCCeEEEEEcCCCCChHHHHHHHhCCCCCCCcEEEEcC-------------eE
Q 037346 357 AIEIIDGSFSWDFSSPNPTLRNINLKVFHGMRVAVCGTVGSGKSSCLSCILGGVPKESGIIRLCG-------------TK 423 (1156)
Q Consensus 357 ~i~~~~~~f~~~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKSTll~~i~g~~~~~~G~i~~~g-------------~~ 423 (1156)
.++++|++|+|+ ++++++|+||++++||+++|+|||||||||||++|+|.++|.+|+|.++| ++
T Consensus 2 ~L~~~~ls~~y~---~~~il~~ls~~i~~G~i~~iiGpNG~GKSTLLk~l~g~l~p~~G~V~l~g~~i~~~~~kelAk~i 78 (258)
T COG1120 2 MLEVENLSFGYG---GKPILDDLSFSIPKGEITGILGPNGSGKSTLLKCLAGLLKPKSGEVLLDGKDIASLSPKELAKKL 78 (258)
T ss_pred eeEEEEEEEEEC---CeeEEecceEEecCCcEEEEECCCCCCHHHHHHHHhccCCCCCCEEEECCCchhhcCHHHHhhhE
Confidence 478999999996 56899999999999999999999999999999999999999999999999 47
Q ss_pred EEEecCCcC-CCccHHHHhhcCCC-----------CCHHHHHHHHHHhCCchhhhhCCCCCccccccCCCCCCHHHHHHH
Q 037346 424 AYVAQSPWI-QSGKIEENILFGKE-----------MDRERYERVLEACSLKKDLEVLPFGDQTIIGERGINLSGGQKQRI 491 (1156)
Q Consensus 424 ~~v~Q~~~~-~~~ti~eni~~~~~-----------~~~~~~~~~~~~~~l~~~~~~~~~g~~t~v~~~g~~LSgGqkqRi 491 (1156)
|||||++.. +..||+|-+.+|+. .|.+...++++.+++.+..+ +...+||||||||+
T Consensus 79 a~vpQ~~~~~~~~tV~d~V~~GR~p~~~~~~~~~~~D~~~v~~aL~~~~~~~la~-----------r~~~~LSGGerQrv 147 (258)
T COG1120 79 AYVPQSPSAPFGLTVYELVLLGRYPHLGLFGRPSKEDEEIVEEALELLGLEHLAD-----------RPVDELSGGERQRV 147 (258)
T ss_pred EEeccCCCCCCCcEEeehHhhcCCcccccccCCCHhHHHHHHHHHHHhCcHHHhc-----------CcccccChhHHHHH
Confidence 999999865 45699999999852 13345677788888876553 34568999999999
Q ss_pred HHHHhhccCCCeeeeeCCCCCcCHHHHHHHHHHHHh---cCCCEEEEEccCCCcc-ccCCEEEEEeCCeEEEccChHHHH
Q 037346 492 QIARPLYQDADIFLLDDPFSPVDDHTGAHLFKFCWV---SSSKTVIYATHQVEFL-PAADLILVIKDGKITQAGKYSDIL 567 (1156)
Q Consensus 492 ~lAral~~~~~illlDep~s~lD~~~~~~i~~~~~~---~~~~tvi~vtH~~~~~-~~~d~i~~l~~G~i~~~g~~~~l~ 567 (1156)
.|||||+++|++++||||||+||...+.++++.+.. .+|+|+|+|+||++.. +.||++++|++|+++.+|++++.+
T Consensus 148 ~iArALaQ~~~iLLLDEPTs~LDi~~Q~evl~ll~~l~~~~~~tvv~vlHDlN~A~ryad~~i~lk~G~i~a~G~p~evl 227 (258)
T COG1120 148 LIARALAQETPILLLDEPTSHLDIAHQIEVLELLRDLNREKGLTVVMVLHDLNLAARYADHLILLKDGKIVAQGTPEEVL 227 (258)
T ss_pred HHHHHHhcCCCEEEeCCCccccCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEECCeEEeecCcchhc
Confidence 999999999999999999999999999999887644 5689999999999985 679999999999999999999887
Q ss_pred hc
Q 037346 568 NS 569 (1156)
Q Consensus 568 ~~ 569 (1156)
..
T Consensus 228 T~ 229 (258)
T COG1120 228 TE 229 (258)
T ss_pred CH
Confidence 53
|
|
| >COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.1e-42 Score=363.45 Aligned_cols=199 Identities=30% Similarity=0.473 Sum_probs=174.3
Q ss_pred ccEEEeeeEEEeCCCCCCCccccceEEeeCCeEEEEEcCCCCChHHHHHHHhCCCCCCCcEEEEcC----------eEEE
Q 037346 356 TAIEIIDGSFSWDFSSPNPTLRNINLKVFHGMRVAVCGTVGSGKSSCLSCILGGVPKESGIIRLCG----------TKAY 425 (1156)
Q Consensus 356 ~~i~~~~~~f~~~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKSTll~~i~g~~~~~~G~i~~~g----------~~~~ 425 (1156)
..|+++|++|+|.. . ++|+|+||++++|++++|+||||||||||+++|+|+++|.+|+|.+.| +|||
T Consensus 3 ~~i~v~nl~v~y~~--~-~vl~~i~l~v~~G~~~~iiGPNGaGKSTLlK~iLGll~p~~G~i~~~g~~~~~~~~~~~IgY 79 (254)
T COG1121 3 PMIEVENLTVSYGN--R-PVLEDISLSVEKGEITALIGPNGAGKSTLLKAILGLLKPSSGEIKIFGKPVRKRRKRLRIGY 79 (254)
T ss_pred cEEEEeeeEEEECC--E-eeeeccEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCcCCcceEEEccccccccccCCeEEE
Confidence 35899999999963 2 699999999999999999999999999999999999999999999876 4899
Q ss_pred EecCC---cCCCccHHHHhhcCCCC-----------CHHHHHHHHHHhCCchhhhhCCCCCccccccCCCCCCHHHHHHH
Q 037346 426 VAQSP---WIQSGKIEENILFGKEM-----------DRERYERVLEACSLKKDLEVLPFGDQTIIGERGINLSGGQKQRI 491 (1156)
Q Consensus 426 v~Q~~---~~~~~ti~eni~~~~~~-----------~~~~~~~~~~~~~l~~~~~~~~~g~~t~v~~~g~~LSgGqkqRi 491 (1156)
|||.. |-|+.||+|-+.+|... |.+..+++++..++.+..+ +...+|||||+|||
T Consensus 80 VPQ~~~~d~~fP~tV~d~V~~g~~~~~g~~~~~~~~d~~~v~~aL~~Vgm~~~~~-----------r~i~~LSGGQ~QRV 148 (254)
T COG1121 80 VPQKSSVDRSFPITVKDVVLLGRYGKKGWFRRLNKKDKEKVDEALERVGMEDLRD-----------RQIGELSGGQKQRV 148 (254)
T ss_pred cCcccccCCCCCcCHHHHHHccCcccccccccccHHHHHHHHHHHHHcCchhhhC-----------CcccccCcHHHHHH
Confidence 99964 67889999999988431 3477888999999875443 45568999999999
Q ss_pred HHHHhhccCCCeeeeeCCCCCcCHHHHHHHHHHHHh--cCCCEEEEEccCCCccc-cCCEEEEEeCCeEEEccChHHHHh
Q 037346 492 QIARPLYQDADIFLLDDPFSPVDDHTGAHLFKFCWV--SSSKTVIYATHQVEFLP-AADLILVIKDGKITQAGKYSDILN 568 (1156)
Q Consensus 492 ~lAral~~~~~illlDep~s~lD~~~~~~i~~~~~~--~~~~tvi~vtH~~~~~~-~~d~i~~l~~G~i~~~g~~~~l~~ 568 (1156)
.|||||+++|++|+|||||+++|+.++..+++.+.. .+|+||++||||++.+. .+|+|+.|+ +++...|++++..+
T Consensus 149 ~lARAL~~~p~lllLDEP~~gvD~~~~~~i~~lL~~l~~eg~tIl~vtHDL~~v~~~~D~vi~Ln-~~~~~~G~~~~~~~ 227 (254)
T COG1121 149 LLARALAQNPDLLLLDEPFTGVDVAGQKEIYDLLKELRQEGKTVLMVTHDLGLVMAYFDRVICLN-RHLIASGPPEEVLT 227 (254)
T ss_pred HHHHHhccCCCEEEecCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCcHHhHhhCCEEEEEc-CeeEeccChhhccC
Confidence 999999999999999999999999999999887643 45999999999999875 699999996 57788899998875
Q ss_pred c
Q 037346 569 S 569 (1156)
Q Consensus 569 ~ 569 (1156)
.
T Consensus 228 ~ 228 (254)
T COG1121 228 E 228 (254)
T ss_pred H
Confidence 3
|
|
| >COG1127 Ttg2A ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-41 Score=348.57 Aligned_cols=205 Identities=28% Similarity=0.405 Sum_probs=178.3
Q ss_pred CccEEEeeeEEEeCCCCCCCccccceEEeeCCeEEEEEcCCCCChHHHHHHHhCCCCCCCcEEEEcCe------------
Q 037346 355 DTAIEIIDGSFSWDFSSPNPTLRNINLKVFHGMRVAVCGTVGSGKSSCLSCILGGVPKESGIIRLCGT------------ 422 (1156)
Q Consensus 355 ~~~i~~~~~~f~~~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKSTll~~i~g~~~~~~G~i~~~g~------------ 422 (1156)
...|++++++++|. ++.+++|+||+|++||+++|+||||||||||+++|.|+++|++|+|.++|.
T Consensus 6 ~~~I~vr~v~~~fG---~~~Ild~v~l~V~~Gei~~iiGgSGsGKStlLr~I~Gll~P~~GeI~i~G~~i~~ls~~~~~~ 82 (263)
T COG1127 6 EPLIEVRGVTKSFG---DRVILDGVDLDVPRGEILAILGGSGSGKSTLLRLILGLLRPDKGEILIDGEDIPQLSEEELYE 82 (263)
T ss_pred cceEEEeeeeeecC---CEEEecCceeeecCCcEEEEECCCCcCHHHHHHHHhccCCCCCCeEEEcCcchhccCHHHHHH
Confidence 35799999999996 578999999999999999999999999999999999999999999999983
Q ss_pred ----EEEEecCCcCCCc-cHHHHhhcCC----CCCHHHH----HHHHHHhCCchh-hhhCCCCCccccccCCCCCCHHHH
Q 037346 423 ----KAYVAQSPWIQSG-KIEENILFGK----EMDRERY----ERVLEACSLKKD-LEVLPFGDQTIIGERGINLSGGQK 488 (1156)
Q Consensus 423 ----~~~v~Q~~~~~~~-ti~eni~~~~----~~~~~~~----~~~~~~~~l~~~-~~~~~~g~~t~v~~~g~~LSgGqk 488 (1156)
+|+++|...+|+. ||+||+.|.. ..+++.+ ..-++.++|... .+.+| ++||||++
T Consensus 83 ir~r~GvlFQ~gALFssltV~eNVafplre~~~lp~~~i~~lv~~KL~~VGL~~~~~~~~P-----------sELSGGM~ 151 (263)
T COG1127 83 IRKRMGVLFQQGALFSSLTVFENVAFPLREHTKLPESLIRELVLMKLELVGLRGAAADLYP-----------SELSGGMR 151 (263)
T ss_pred HHhheeEEeeccccccccchhHhhheehHhhccCCHHHHHHHHHHHHHhcCCChhhhhhCc-----------hhhcchHH
Confidence 6999999999976 9999999963 2344433 345778899887 66666 68999999
Q ss_pred HHHHHHHhhccCCCeeeeeCCCCCcCHHHHHHHHHHHHh---cCCCEEEEEccCCCccc-cCCEEEEEeCCeEEEccChH
Q 037346 489 QRIQIARPLYQDADIFLLDDPFSPVDDHTGAHLFKFCWV---SSSKTVIYATHQVEFLP-AADLILVIKDGKITQAGKYS 564 (1156)
Q Consensus 489 qRi~lAral~~~~~illlDep~s~lD~~~~~~i~~~~~~---~~~~tvi~vtH~~~~~~-~~d~i~~l~~G~i~~~g~~~ 564 (1156)
.|+|||||+..||+++++||||++|||.+...+-+.+.. .-|.|+|+||||++.+. .||+|+++.||+|+..|+++
T Consensus 152 KRvaLARAialdPell~~DEPtsGLDPI~a~~~~~LI~~L~~~lg~T~i~VTHDl~s~~~i~Drv~~L~~gkv~~~Gt~~ 231 (263)
T COG1127 152 KRVALARAIALDPELLFLDEPTSGLDPISAGVIDELIRELNDALGLTVIMVTHDLDSLLTIADRVAVLADGKVIAEGTPE 231 (263)
T ss_pred HHHHHHHHHhcCCCEEEecCCCCCCCcchHHHHHHHHHHHHHhhCCEEEEEECChHHHHhhhceEEEEeCCEEEEeCCHH
Confidence 999999999999999999999999999998766444332 34789999999998875 59999999999999999999
Q ss_pred HHHhcCcch
Q 037346 565 DILNSGTDF 573 (1156)
Q Consensus 565 ~l~~~~~~~ 573 (1156)
++.+....+
T Consensus 232 el~~sd~P~ 240 (263)
T COG1127 232 ELLASDDPW 240 (263)
T ss_pred HHHhCCCHH
Confidence 998765543
|
|
| >COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-42 Score=347.23 Aligned_cols=204 Identities=25% Similarity=0.360 Sum_probs=177.5
Q ss_pred ccEEEeeeEEEeCCCCCCCccccceEEeeCCeEEEEEcCCCCChHHHHHHHhCCCCCCC-----cEEEEcCe--------
Q 037346 356 TAIEIIDGSFSWDFSSPNPTLRNINLKVFHGMRVAVCGTVGSGKSSCLSCILGGVPKES-----GIIRLCGT-------- 422 (1156)
Q Consensus 356 ~~i~~~~~~f~~~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKSTll~~i~g~~~~~~-----G~i~~~g~-------- 422 (1156)
..++++|+++.|+ ++.+|+|||++|++++++|++|||||||||||+++.+..+..+ |+|.++|+
T Consensus 6 ~~~~~~~l~~yYg---~~~aL~~i~l~i~~~~VTAlIGPSGcGKST~LR~lNRmndl~~~~r~~G~v~~~g~ni~~~~~d 82 (253)
T COG1117 6 PAIEVRDLNLYYG---DKHALKDINLDIPKNKVTALIGPSGCGKSTLLRCLNRMNDLIPGARVEGEVLLDGKNIYDPKVD 82 (253)
T ss_pred ceeEecceeEEEC---chhhhccCceeccCCceEEEECCCCcCHHHHHHHHHhhcccCcCceEEEEEEECCeeccCCCCC
Confidence 4689999999996 5689999999999999999999999999999999999988765 99999984
Q ss_pred -------EEEEecCCcCCCccHHHHhhcCCCC-------CHHHHHHHHHHhCCchhhhhCCCCCccccccCCCCCCHHHH
Q 037346 423 -------KAYVAQSPWIQSGKIEENILFGKEM-------DRERYERVLEACSLKKDLEVLPFGDQTIIGERGINLSGGQK 488 (1156)
Q Consensus 423 -------~~~v~Q~~~~~~~ti~eni~~~~~~-------~~~~~~~~~~~~~l~~~~~~~~~g~~t~v~~~g~~LSgGqk 488 (1156)
+|+|+|.|.-|+.||+|||.+|... -++.+++.++.++|.+..+. .+.+.+..|||||+
T Consensus 83 ~~~lRr~vGMVFQkPnPFp~SIydNVayG~r~~g~~~~~ldeiVe~sLk~AaLWdEVKD-------rL~~sa~~LSGGQQ 155 (253)
T COG1117 83 VVELRRRVGMVFQKPNPFPMSIYDNVAYGLRLHGIKDKELDEIVESSLKKAALWDEVKD-------RLHKSALGLSGGQQ 155 (253)
T ss_pred HHHHHHHheeeccCCCCCCchHHHHHHHhHHhhccchHHHHHHHHHHHHHhHhHHHhHH-------HhhCCccCCChhHH
Confidence 6999999999999999999998532 13557778888888765432 23466788999999
Q ss_pred HHHHHHHhhccCCCeeeeeCCCCCcCHHHHHHHHHHHHh-cCCCEEEEEccCCCccc-cCCEEEEEeCCeEEEccChHHH
Q 037346 489 QRIQIARPLYQDADIFLLDDPFSPVDDHTGAHLFKFCWV-SSSKTVIYATHQVEFLP-AADLILVIKDGKITQAGKYSDI 566 (1156)
Q Consensus 489 qRi~lAral~~~~~illlDep~s~lD~~~~~~i~~~~~~-~~~~tvi~vtH~~~~~~-~~d~i~~l~~G~i~~~g~~~~l 566 (1156)
||+||||||.-+|+|||||||||||||.+..+|.+.+.. .++-|+|+|||+++... .+|+..++.+|+++|.|+.+++
T Consensus 156 QRLcIARalAv~PeVlLmDEPtSALDPIsT~kIEeLi~eLk~~yTIviVTHnmqQAaRvSD~taFf~~G~LvE~g~T~~i 235 (253)
T COG1117 156 QRLCIARALAVKPEVLLMDEPTSALDPISTLKIEELITELKKKYTIVIVTHNMQQAARVSDYTAFFYLGELVEFGPTDKI 235 (253)
T ss_pred HHHHHHHHHhcCCcEEEecCcccccCchhHHHHHHHHHHHHhccEEEEEeCCHHHHHHHhHhhhhhcccEEEEEcCHHhh
Confidence 999999999999999999999999999999988766554 35679999999999875 5999999999999999999998
Q ss_pred Hhc
Q 037346 567 LNS 569 (1156)
Q Consensus 567 ~~~ 569 (1156)
..+
T Consensus 236 F~~ 238 (253)
T COG1117 236 FTN 238 (253)
T ss_pred hcC
Confidence 764
|
|
| >KOG0927 consensus Predicted transporter (ABC superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-41 Score=378.62 Aligned_cols=172 Identities=19% Similarity=0.319 Sum_probs=137.4
Q ss_pred CeEEEEEEEEEEcCC--------------CCceeeCCCCCCHHHHHHHHhhcccCCCceEEEcCeeCCCCChHHHhhcCe
Q 037346 946 GEVNIRHLQVRYAPN--------------LPLVLRGRTGSGKSTLIQTLFRIVESTAGHILIDGKDISLIGLHDLRTRLS 1011 (1156)
Q Consensus 946 g~I~~~~Vsf~Y~~~--------------~~~vL~G~SGsGKSTL~~lL~rl~~p~~G~I~idG~di~~i~~~~LR~~i~ 1011 (1156)
..|.|+||+|+|+++ .+++++||+|+|||||++++.|...|+.|.|.-.-. .+++
T Consensus 388 pvi~~~nv~F~y~~~~~iy~~l~fgid~~srvAlVGPNG~GKsTLlKl~~gdl~p~~G~vs~~~H-----------~~~~ 456 (614)
T KOG0927|consen 388 PVIMVQNVSFGYSDNPMIYKKLNFGIDLDSRVALVGPNGAGKSTLLKLITGDLQPTIGMVSRHSH-----------NKLP 456 (614)
T ss_pred CeEEEeccccCCCCcchhhhhhhcccCcccceeEecCCCCchhhhHHHHhhcccccccccccccc-----------ccch
Confidence 358899999988643 456889999999999999999999999998865422 1233
Q ss_pred eecc---ccccccccchhccCC-CC-CCCHHHHHHHHHHcCCChHHHhhcCCcccc--------ccccccCCCEEEEecC
Q 037346 1012 IIPQ---DPTMFEGTTRSNLDP-LE-EHADEQIWEALDKCQLGDEVRKKKGKLDSQ--------GRVLLKKSKVLVLDEA 1078 (1156)
Q Consensus 1012 ~VpQ---dp~LF~gTIr~Nl~~-~~-~~~deei~~al~~~~l~~~i~~lp~gl~s~--------ARALLr~~~ILiLDEa 1078 (1156)
.-.| +...++-|.-++..+ +. ....+++...|.++||....+..|-...|. ||.+++.|.|||||||
T Consensus 457 ~y~Qh~~e~ldl~~s~le~~~~~~~~~~~~e~~r~ilgrfgLtgd~q~~p~~~LS~Gqr~rVlFa~l~~kqP~lLlLDEP 536 (614)
T KOG0927|consen 457 RYNQHLAEQLDLDKSSLEFMMPKFPDEKELEEMRSILGRFGLTGDAQVVPMSQLSDGQRRRVLFARLAVKQPHLLLLDEP 536 (614)
T ss_pred hhhhhhHhhcCcchhHHHHHHHhccccchHHHHHHHHHHhCCCccccccchhhcccccchhHHHHHHHhcCCcEEEecCC
Confidence 3334 334566677777654 23 245688999999999987666655554444 7999999999999999
Q ss_pred CcCCCHHHHHHHHHHHHHhcCCceEEEeecCcccccc-cCEEEEEeCcEEeee
Q 037346 1079 TASVDTATDNQIQQTLRQHFSDCTVVTIAHRITSVLD-SAMVLLLNHGLIKEY 1130 (1156)
Q Consensus 1079 TS~LD~~te~~I~~~l~~~~~~~TvI~IaHrl~ti~~-~D~I~Vl~~G~IvE~ 1130 (1156)
|++||.+|-....++|.++ ..+||+|+|+...|.. +++|++.+||++...
T Consensus 537 tnhLDi~tid~laeaiNe~--~Ggvv~vSHDfrlI~qVaeEi~~c~~~~~~~~ 587 (614)
T KOG0927|consen 537 TNHLDIETIDALAEAINEF--PGGVVLVSHDFRLISQVAEEIWVCENGTVTKW 587 (614)
T ss_pred CcCCCchhHHHHHHHHhcc--CCceeeeechhhHHHHHHHHhHhhccCceeec
Confidence 9999999999999999887 6799999999999876 889999999988764
|
|
| >COG1118 CysA ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.2e-42 Score=361.73 Aligned_cols=200 Identities=31% Similarity=0.454 Sum_probs=177.8
Q ss_pred cEEEeeeEEEeCCCCCCCccccceEEeeCCeEEEEEcCCCCChHHHHHHHhCCCCCCCcEEEEcCe--------------
Q 037346 357 AIEIIDGSFSWDFSSPNPTLRNINLKVFHGMRVAVCGTVGSGKSSCLSCILGGVPKESGIIRLCGT-------------- 422 (1156)
Q Consensus 357 ~i~~~~~~f~~~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKSTll~~i~g~~~~~~G~i~~~g~-------------- 422 (1156)
.|.++|+++.|+ ..++++|||++|+.||.+|+.|||||||||||++|+|+..|+.|.|.++|+
T Consensus 2 ~i~i~~~~~~~~---~~~a~~di~l~i~~Ge~vaLlGpSGaGKsTlLRiIAGLe~p~~G~I~~~~~~l~D~~~~~~~~R~ 78 (345)
T COG1118 2 SIRINNVKKRFG---AFGALDDISLDIKSGELVALLGPSGAGKSTLLRIIAGLETPDAGRIRLNGRVLFDVSNLAVRDRK 78 (345)
T ss_pred ceeehhhhhhcc---cccccccceeeecCCcEEEEECCCCCcHHHHHHHHhCcCCCCCceEEECCEeccchhccchhhcc
Confidence 478889999996 467899999999999999999999999999999999999999999999995
Q ss_pred EEEEecCCcCCC-ccHHHHhhcCCC---------CCHHHHHHHHHHhCCchhhhhCCCCCccccccCCCCCCHHHHHHHH
Q 037346 423 KAYVAQSPWIQS-GKIEENILFGKE---------MDRERYERVLEACSLKKDLEVLPFGDQTIIGERGINLSGGQKQRIQ 492 (1156)
Q Consensus 423 ~~~v~Q~~~~~~-~ti~eni~~~~~---------~~~~~~~~~~~~~~l~~~~~~~~~g~~t~v~~~g~~LSgGqkqRi~ 492 (1156)
||||+|+..+|. .||.|||.||.. ..+.+..+.++.|+|+..-+..| .+||||||||||
T Consensus 79 VGfvFQ~YALF~HmtVa~NIAFGl~~~~~~p~~~~~r~rv~elL~lvqL~~la~ryP-----------~QLSGGQrQRVA 147 (345)
T COG1118 79 VGFVFQHYALFPHMTVADNIAFGLKVRKERPSEAEIRARVEELLRLVQLEGLADRYP-----------AQLSGGQRQRVA 147 (345)
T ss_pred eeEEEechhhcccchHHhhhhhcccccccCCChhhHHHHHHHHHHHhcccchhhcCc-----------hhcChHHHHHHH
Confidence 699999998875 699999999963 23457778899999987666555 689999999999
Q ss_pred HHHhhccCCCeeeeeCCCCCcCHHHHHHHHHHHHh---cCCCEEEEEccCCCcc-ccCCEEEEEeCCeEEEccChHHHHh
Q 037346 493 IARPLYQDADIFLLDDPFSPVDDHTGAHLFKFCWV---SSSKTVIYATHQVEFL-PAADLILVIKDGKITQAGKYSDILN 568 (1156)
Q Consensus 493 lAral~~~~~illlDep~s~lD~~~~~~i~~~~~~---~~~~tvi~vtH~~~~~-~~~d~i~~l~~G~i~~~g~~~~l~~ 568 (1156)
|||||..+|++||||||++|||++.++.+-..+.. .-|.|+++||||.+.. +.||+|++|++|+|...|+++|+..
T Consensus 148 LARALA~eP~vLLLDEPf~ALDa~vr~~lr~wLr~~~~~~~~ttvfVTHD~eea~~ladrvvvl~~G~Ieqvg~p~ev~~ 227 (345)
T COG1118 148 LARALAVEPKVLLLDEPFGALDAKVRKELRRWLRKLHDRLGVTTVFVTHDQEEALELADRVVVLNQGRIEQVGPPDEVYD 227 (345)
T ss_pred HHHHhhcCCCeEeecCCchhhhHHHHHHHHHHHHHHHHhhCceEEEEeCCHHHHHhhcceEEEecCCeeeeeCCHHHHhc
Confidence 99999999999999999999999999988776643 4588999999999886 5699999999999999999999976
Q ss_pred cC
Q 037346 569 SG 570 (1156)
Q Consensus 569 ~~ 570 (1156)
..
T Consensus 228 ~P 229 (345)
T COG1118 228 HP 229 (345)
T ss_pred CC
Confidence 43
|
|
| >COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-41 Score=377.29 Aligned_cols=200 Identities=32% Similarity=0.414 Sum_probs=177.7
Q ss_pred cEEEeeeEEEeCCCCCCCccccceEEeeCCeEEEEEcCCCCChHHHHHHHhCCCCCCCcEEEEcCe-----------EEE
Q 037346 357 AIEIIDGSFSWDFSSPNPTLRNINLKVFHGMRVAVCGTVGSGKSSCLSCILGGVPKESGIIRLCGT-----------KAY 425 (1156)
Q Consensus 357 ~i~~~~~~f~~~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKSTll~~i~g~~~~~~G~i~~~g~-----------~~~ 425 (1156)
.|+++|+++.|+. ..+++|+||+|++||+++++|||||||||||++|+|+.+|++|+|.++|+ +|+
T Consensus 3 ~i~l~~v~K~yg~---~~~l~~i~l~i~~Gef~vllGPSGcGKSTlLr~IAGLe~~~~G~I~i~g~~vt~l~P~~R~iam 79 (338)
T COG3839 3 ELELKNVRKSFGS---FEVLKDVNLDIEDGEFVVLLGPSGCGKSTLLRMIAGLEEPTSGEILIDGRDVTDLPPEKRGIAM 79 (338)
T ss_pred EEEEeeeEEEcCC---ceeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCChhHCCEEE
Confidence 5899999999962 22999999999999999999999999999999999999999999999994 799
Q ss_pred EecCCcCCCc-cHHHHhhcCCCC-------CHHHHHHHHHHhCCchhhhhCCCCCccccccCCCCCCHHHHHHHHHHHhh
Q 037346 426 VAQSPWIQSG-KIEENILFGKEM-------DRERYERVLEACSLKKDLEVLPFGDQTIIGERGINLSGGQKQRIQIARPL 497 (1156)
Q Consensus 426 v~Q~~~~~~~-ti~eni~~~~~~-------~~~~~~~~~~~~~l~~~~~~~~~g~~t~v~~~g~~LSgGqkqRi~lAral 497 (1156)
|+|+..+++. ||+|||.|+... .+++++++.+.+++++.+++.| .+|||||||||||||||
T Consensus 80 VFQ~yALyPhmtV~~Niaf~Lk~~~~~k~ei~~rV~eva~~L~l~~lL~r~P-----------~~LSGGQrQRVAlaRAl 148 (338)
T COG3839 80 VFQNYALYPHMTVYENIAFGLKLRGVPKAEIDKRVKEVAKLLGLEHLLNRKP-----------LQLSGGQRQRVALARAL 148 (338)
T ss_pred EeCCccccCCCcHHHHhhhhhhhCCCchHHHHHHHHHHHHHcCChhHHhcCc-----------ccCChhhHHHHHHHHHH
Confidence 9999998764 999999998653 2567888999999988887655 68999999999999999
Q ss_pred ccCCCeeeeeCCCCCcCHHHHHHHHHHHHh---cCCCEEEEEccCCCcc-ccCCEEEEEeCCeEEEccChHHHHhcC
Q 037346 498 YQDADIFLLDDPFSPVDDHTGAHLFKFCWV---SSSKTVIYATHQVEFL-PAADLILVIKDGKITQAGKYSDILNSG 570 (1156)
Q Consensus 498 ~~~~~illlDep~s~lD~~~~~~i~~~~~~---~~~~tvi~vtH~~~~~-~~~d~i~~l~~G~i~~~g~~~~l~~~~ 570 (1156)
.++|+++|||||+|+||++.+..+...+.. .-|.|+|.||||...+ ..+|+|++|++|+|.+.|++.++.+..
T Consensus 149 Vr~P~v~L~DEPlSnLDa~lR~~mr~ei~~lh~~l~~T~IYVTHDq~EAmtladri~Vm~~G~i~Q~g~p~ely~~P 225 (338)
T COG3839 149 VRKPKVFLLDEPLSNLDAKLRVLMRSEIKKLHERLGTTTIYVTHDQVEAMTLADRIVVMNDGRIQQVGTPLELYERP 225 (338)
T ss_pred hcCCCEEEecCchhHhhHHHHHHHHHHHHHHHHhcCCcEEEEcCCHHHHHhhCCEEEEEeCCeeeecCChHHHhhCc
Confidence 999999999999999999998877655432 4578999999998765 569999999999999999999998653
|
|
| >COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=9e-42 Score=332.16 Aligned_cols=196 Identities=31% Similarity=0.433 Sum_probs=174.4
Q ss_pred EEEeeeEEEeCCCCCCCccccceEEeeCCeEEEEEcCCCCChHHHHHHHhCCCCCCCcEEEEcCe-----------EEEE
Q 037346 358 IEIIDGSFSWDFSSPNPTLRNINLKVFHGMRVAVCGTVGSGKSSCLSCILGGVPKESGIIRLCGT-----------KAYV 426 (1156)
Q Consensus 358 i~~~~~~f~~~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKSTll~~i~g~~~~~~G~i~~~g~-----------~~~v 426 (1156)
+.+++++|+|... =-..+++|++||++||+||||||||||+++|+|+..|.+|+|.++|. ++++
T Consensus 2 l~L~~V~~~y~~~-----~~~fdl~v~~ge~vAi~GpSGaGKSTLLnLIAGF~~P~~G~i~i~g~d~t~~~P~~RPVSml 76 (231)
T COG3840 2 LALDDVRFSYGHL-----PMRFDLTVPAGEIVAILGPSGAGKSTLLNLIAGFETPASGEILINGVDHTASPPAERPVSML 76 (231)
T ss_pred ccccceEEeeCcc-----eEEEEEeecCCcEEEEECCCCccHHHHHHHHHhccCCCCceEEEcCeecCcCCcccCChhhh
Confidence 5678999999632 23578999999999999999999999999999999999999999994 5899
Q ss_pred ecCCcCCCc-cHHHHhhcCCC-------CCHHHHHHHHHHhCCchhhhhCCCCCccccccCCCCCCHHHHHHHHHHHhhc
Q 037346 427 AQSPWIQSG-KIEENILFGKE-------MDRERYERVLEACSLKKDLEVLPFGDQTIIGERGINLSGGQKQRIQIARPLY 498 (1156)
Q Consensus 427 ~Q~~~~~~~-ti~eni~~~~~-------~~~~~~~~~~~~~~l~~~~~~~~~g~~t~v~~~g~~LSgGqkqRi~lAral~ 498 (1156)
+|+..+|.. ||.+||.+|.. .+.++++.++...+|....+++| .+||||||||+||||+|.
T Consensus 77 FQEnNLFaHLtV~qNigLGl~P~LkL~a~~r~~v~~aa~~vGl~~~~~RLP-----------~~LSGGqRQRvALARclv 145 (231)
T COG3840 77 FQENNLFAHLTVAQNIGLGLSPGLKLNAEQREKVEAAAAQVGLAGFLKRLP-----------GELSGGQRQRVALARCLV 145 (231)
T ss_pred hhccccchhhhhhhhhcccCCcccccCHHHHHHHHHHHHHhChhhHhhhCc-----------cccCchHHHHHHHHHHHh
Confidence 999999975 99999999953 34678888999999999999988 489999999999999999
Q ss_pred cCCCeeeeeCCCCCcCHHHHHHHHHHHHh---cCCCEEEEEccCCCccc-cCCEEEEEeCCeEEEccChHHHHhc
Q 037346 499 QDADIFLLDDPFSPVDDHTGAHLFKFCWV---SSSKTVIYATHQVEFLP-AADLILVIKDGKITQAGKYSDILNS 569 (1156)
Q Consensus 499 ~~~~illlDep~s~lD~~~~~~i~~~~~~---~~~~tvi~vtH~~~~~~-~~d~i~~l~~G~i~~~g~~~~l~~~ 569 (1156)
++-+|++||||||+|||.-+.++...+.. .++.|+++|||+++.+. .+|+++++++|+|.++|+.+++...
T Consensus 146 R~~PilLLDEPFsALdP~LR~eMl~Lv~~l~~E~~~TllmVTH~~~Da~~ia~~~~fl~~Gri~~~g~~~~~~~~ 220 (231)
T COG3840 146 REQPILLLDEPFSALDPALRAEMLALVSQLCDERKMTLLMVTHHPEDAARIADRVVFLDNGRIAAQGSTQELLSG 220 (231)
T ss_pred ccCCeEEecCchhhcCHHHHHHHHHHHHHHHHhhCCEEEEEeCCHHHHHHhhhceEEEeCCEEEeeccHHHHhcc
Confidence 99999999999999999999887665432 57899999999999876 5999999999999999999988754
|
|
| >COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.6e-42 Score=381.33 Aligned_cols=201 Identities=33% Similarity=0.435 Sum_probs=178.8
Q ss_pred ccEEEeeeEEEeCCCCCCCccccceEEeeCCeEEEEEcCCCCChHHHHHHHhCCCCCCCcEEEEcCe-----------EE
Q 037346 356 TAIEIIDGSFSWDFSSPNPTLRNINLKVFHGMRVAVCGTVGSGKSSCLSCILGGVPKESGIIRLCGT-----------KA 424 (1156)
Q Consensus 356 ~~i~~~~~~f~~~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKSTll~~i~g~~~~~~G~i~~~g~-----------~~ 424 (1156)
..++++|++++|. +..+++|+||+|++||+++++|||||||||+|++|+|+..|++|+|.++|+ ++
T Consensus 4 ~~l~i~~v~k~yg---~~~av~~isl~i~~Gef~~lLGPSGcGKTTlLR~IAGfe~p~~G~I~l~G~~i~~lpp~kR~ig 80 (352)
T COG3842 4 PALEIRNVSKSFG---DFTAVDDISLDIKKGEFVTLLGPSGCGKTTLLRMIAGFEQPSSGEILLDGEDITDVPPEKRPIG 80 (352)
T ss_pred ceEEEEeeeeecC---CeeEEecceeeecCCcEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCChhhcccc
Confidence 4699999999996 568999999999999999999999999999999999999999999999995 69
Q ss_pred EEecCCcCCC-ccHHHHhhcCCC----CC----HHHHHHHHHHhCCchhhhhCCCCCccccccCCCCCCHHHHHHHHHHH
Q 037346 425 YVAQSPWIQS-GKIEENILFGKE----MD----RERYERVLEACSLKKDLEVLPFGDQTIIGERGINLSGGQKQRIQIAR 495 (1156)
Q Consensus 425 ~v~Q~~~~~~-~ti~eni~~~~~----~~----~~~~~~~~~~~~l~~~~~~~~~g~~t~v~~~g~~LSgGqkqRi~lAr 495 (1156)
+|+|+..||+ .||+|||.||.. .. ++++.++++..+|.+..++ ++.+|||||+|||||||
T Consensus 81 ~VFQ~YALFPHltV~~NVafGLk~~~~~~~~~i~~rv~e~L~lV~L~~~~~R-----------~p~qLSGGQqQRVALAR 149 (352)
T COG3842 81 MVFQSYALFPHMTVEENVAFGLKVRKKLKKAEIKARVEEALELVGLEGFADR-----------KPHQLSGGQQQRVALAR 149 (352)
T ss_pred eeecCcccCCCCcHHHHhhhhhhhcCCCCHHHHHHHHHHHHHHcCchhhhhh-----------ChhhhChHHHHHHHHHH
Confidence 9999999886 599999999965 12 2477888888888776554 44799999999999999
Q ss_pred hhccCCCeeeeeCCCCCcCHHHHHHHHHHHHh---cCCCEEEEEccCCCc-cccCCEEEEEeCCeEEEccChHHHHhcC
Q 037346 496 PLYQDADIFLLDDPFSPVDDHTGAHLFKFCWV---SSSKTVIYATHQVEF-LPAADLILVIKDGKITQAGKYSDILNSG 570 (1156)
Q Consensus 496 al~~~~~illlDep~s~lD~~~~~~i~~~~~~---~~~~tvi~vtH~~~~-~~~~d~i~~l~~G~i~~~g~~~~l~~~~ 570 (1156)
||..+|++||||||+||||.+.+.++...+.. ..|.|.|+||||.+. +..+|||++|++|+|.+.|+++|+....
T Consensus 150 AL~~~P~vLLLDEPlSaLD~kLR~~mr~Elk~lq~~~giT~i~VTHDqeEAl~msDrI~Vm~~G~I~Q~gtP~eiY~~P 228 (352)
T COG3842 150 ALVPEPKVLLLDEPLSALDAKLREQMRKELKELQRELGITFVYVTHDQEEALAMSDRIAVMNDGRIEQVGTPEEIYERP 228 (352)
T ss_pred HhhcCcchhhhcCcccchhHHHHHHHHHHHHHHHHhcCCeEEEEECCHHHHhhhccceEEccCCceeecCCHHHHhhCc
Confidence 99999999999999999999999888665532 458999999999876 5679999999999999999999998654
|
|
| >cd03289 ABCC_CFTR2 The CFTR subfamily domain 2 | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-41 Score=376.04 Aligned_cols=203 Identities=36% Similarity=0.624 Sum_probs=189.2
Q ss_pred EEEEEEEEEEcCCCCceeeCCCCCCHHHHHHHHhhcccCCCceEEEcCeeCCCCChHHHhhcCeeeccccccccccchhc
Q 037346 948 VNIRHLQVRYAPNLPLVLRGRTGSGKSTLIQTLFRIVESTAGHILIDGKDISLIGLHDLRTRLSIIPQDPTMFEGTTRSN 1027 (1156)
Q Consensus 948 I~~~~Vsf~Y~~~~~~vL~G~SGsGKSTL~~lL~rl~~p~~G~I~idG~di~~i~~~~LR~~i~~VpQdp~LF~gTIr~N 1027 (1156)
..++||+|...+++.++|.|+||||||||+++|+|+++ .+|+|++||+++..++...+|++|+||||+|.+|++|+++|
T Consensus 18 ~~l~~isl~I~~Ge~~~IvG~nGsGKSTLl~~L~gl~~-~~G~I~i~g~~i~~~~~~~lr~~i~~v~q~~~lf~~tv~~n 96 (275)
T cd03289 18 AVLENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLN-TEGDIQIDGVSWNSVPLQKWRKAFGVIPQKVFIFSGTFRKN 96 (275)
T ss_pred cceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhhhcC-CCcEEEECCEEhhhCCHHHHhhhEEEECCCcccchhhHHHH
Confidence 35777777777787788999999999999999999998 79999999999999999999999999999999999999999
Q ss_pred cCCCCCCCHHHHHHHHHHcCCChHHHhhcCCcccc------------------ccccccCCCEEEEecCCcCCCHHHHHH
Q 037346 1028 LDPLEEHADEQIWEALDKCQLGDEVRKKKGKLDSQ------------------GRVLLKKSKVLVLDEATASVDTATDNQ 1089 (1156)
Q Consensus 1028 l~~~~~~~deei~~al~~~~l~~~i~~lp~gl~s~------------------ARALLr~~~ILiLDEaTS~LD~~te~~ 1089 (1156)
++++...++++++++++.+++.+++..+|+++++. |||++++|+||||||||++||+++++.
T Consensus 97 l~~~~~~~~~~~~~~l~~~gL~~~~~~~p~~l~~~~~~~g~~LS~G~~qrl~LaRall~~p~illlDEpts~LD~~~~~~ 176 (275)
T cd03289 97 LDPYGKWSDEEIWKVAEEVGLKSVIEQFPGQLDFVLVDGGCVLSHGHKQLMCLARSVLSKAKILLLDEPSAHLDPITYQV 176 (275)
T ss_pred hhhccCCCHHHHHHHHHHcCCHHHHHhCcccccceecCCCCCCCHHHHHHHHHHHHHhcCCCEEEEECccccCCHHHHHH
Confidence 99877778899999999999999999999986642 899999999999999999999999999
Q ss_pred HHHHHHHhcCCceEEEeecCcccccccCEEEEEeCcEEeeecChhHHhcCCCChHHHHHHHHh
Q 037346 1090 IQQTLRQHFSDCTVVTIAHRITSVLDSAMVLLLNHGLIKEYDSPTKLLENKSSSFAQLVAEYT 1152 (1156)
Q Consensus 1090 I~~~l~~~~~~~TvI~IaHrl~ti~~~D~I~Vl~~G~IvE~G~~~eLl~~~~g~f~~l~~~~~ 1152 (1156)
+++.|++.++++|+|+||||++++..||||+||++|+|+|.|+|++|+++ ++.|++++.+..
T Consensus 177 l~~~l~~~~~~~tii~isH~~~~i~~~dri~vl~~G~i~~~g~~~~l~~~-~~~~~~~~~~~~ 238 (275)
T cd03289 177 IRKTLKQAFADCTVILSEHRIEAMLECQRFLVIEENKVRQYDSIQKLLNE-KSHFKQAISPSD 238 (275)
T ss_pred HHHHHHHhcCCCEEEEEECCHHHHHhCCEEEEecCCeEeecCCHHHHhhC-cHHHHHHHhhcc
Confidence 99999998889999999999999999999999999999999999999985 689999998655
|
The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2. |
| >COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.8e-41 Score=350.66 Aligned_cols=191 Identities=31% Similarity=0.428 Sum_probs=163.9
Q ss_pred EEEeeeEEEeCCCC-CCCccccceEEeeCCeEEEEEcCCCCChHHHHHHHhCCCCCCCcEEEEcCe--------------
Q 037346 358 IEIIDGSFSWDFSS-PNPTLRNINLKVFHGMRVAVCGTVGSGKSSCLSCILGGVPKESGIIRLCGT-------------- 422 (1156)
Q Consensus 358 i~~~~~~f~~~~~~-~~~~l~~i~l~i~~g~~~~ivG~~GsGKSTll~~i~g~~~~~~G~i~~~g~-------------- 422 (1156)
++++|+++.|.... ...+|+++||+|++||+++|+|||||||||||++|.|+..|++|.|.++|.
T Consensus 2 i~~~~v~k~y~~~~~~~~~L~~v~l~i~~Ge~vaI~GpSGSGKSTLLniig~ld~pt~G~v~i~g~d~~~l~~~~~~~~R 81 (226)
T COG1136 2 IELKNVSKIYGLGGEKVEALKDVNLEIEAGEFVAIVGPSGSGKSTLLNLLGGLDKPTSGEVLINGKDLTKLSEKELAKLR 81 (226)
T ss_pred cEEeeeEEEeccCCcceEecccceEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCceEEECCEEcCcCCHHHHHHHH
Confidence 57899999996432 247899999999999999999999999999999999999999999999983
Q ss_pred ---EEEEecCCcCC-CccHHHHhhcC----CCC---CHHHHHHHHHHhCCchhhhhCCCCCccccccCCCCCCHHHHHHH
Q 037346 423 ---KAYVAQSPWIQ-SGKIEENILFG----KEM---DRERYERVLEACSLKKDLEVLPFGDQTIIGERGINLSGGQKQRI 491 (1156)
Q Consensus 423 ---~~~v~Q~~~~~-~~ti~eni~~~----~~~---~~~~~~~~~~~~~l~~~~~~~~~g~~t~v~~~g~~LSgGqkqRi 491 (1156)
+|||+|+..+. +.|++|||.+. ... ..++.+..++..+|.+... ..++.+|||||||||
T Consensus 82 ~~~iGfvFQ~~nLl~~ltv~ENv~lpl~~~~~~~~~~~~~~~~l~~~lgl~~~~~----------~~~p~eLSGGqqQRV 151 (226)
T COG1136 82 RKKIGFVFQNFNLLPDLTVLENVELPLLIAGKSAGRRKRAAEELLEVLGLEDRLL----------KKKPSELSGGQQQRV 151 (226)
T ss_pred HHhEEEECccCCCCCCCCHHHHHHhHHHHcCCChhHHHHHHHHHHHhcCChhhhc----------cCCchhcCHHHHHHH
Confidence 79999999865 56999999953 221 2455667777778876554 123468999999999
Q ss_pred HHHHhhccCCCeeeeeCCCCCcCHHHHHHHHHHHHh---cCCCEEEEEccCCCccccCCEEEEEeCCeEE
Q 037346 492 QIARPLYQDADIFLLDDPFSPVDDHTGAHLFKFCWV---SSSKTVIYATHQVEFLPAADLILVIKDGKIT 558 (1156)
Q Consensus 492 ~lAral~~~~~illlDep~s~lD~~~~~~i~~~~~~---~~~~tvi~vtH~~~~~~~~d~i~~l~~G~i~ 558 (1156)
||||||+.+|++++.||||++||.++.+.+++.+.. ..|+|+|+||||......|||++.|+||++.
T Consensus 152 AIARAL~~~P~iilADEPTgnLD~~t~~~V~~ll~~~~~~~g~tii~VTHd~~lA~~~dr~i~l~dG~~~ 221 (226)
T COG1136 152 AIARALINNPKIILADEPTGNLDSKTAKEVLELLRELNKERGKTIIMVTHDPELAKYADRVIELKDGKIE 221 (226)
T ss_pred HHHHHHhcCCCeEEeeCccccCChHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHhCCEEEEEeCCeee
Confidence 999999999999999999999999999999887644 4588999999999999999999999999954
|
|
| >cd03291 ABCC_CFTR1 The CFTR subfamily domain 1 | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.6e-40 Score=363.65 Aligned_cols=236 Identities=37% Similarity=0.624 Sum_probs=200.9
Q ss_pred HHHHHhccCCCCccccccCCCCCCCccEEEeeeEEEeCCCCCCCccccceEEeeCCeEEEEEcCCCCChHHHHHHHhCCC
Q 037346 331 RIASFLCLEGLQTDVLEKMPRGNSDTAIEIIDGSFSWDFSSPNPTLRNINLKVFHGMRVAVCGTVGSGKSSCLSCILGGV 410 (1156)
Q Consensus 331 Ri~~fl~~~~~~~~~~~~~~~~~~~~~i~~~~~~f~~~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKSTll~~i~g~~ 410 (1156)
.+.+.|..+...... .+. ......|+++|+++.+ +++|+|+||+|++||+++|+|+||||||||+++|+|++
T Consensus 16 ~~~~~~~~~~~~~~~-~~~--~~~~~~l~i~nls~~~-----~~vL~~vs~~i~~Ge~~~liG~NGsGKSTLl~~I~Gl~ 87 (282)
T cd03291 16 GFGELLEKAKQENND-RKH--SSDDNNLFFSNLCLVG-----APVLKNINLKIEKGEMLAITGSTGSGKTSLLMLILGEL 87 (282)
T ss_pred HHHHHHhcccccccc-ccc--CCCCCeEEEEEEEEec-----ccceeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 456666554322211 112 2234579999999952 46999999999999999999999999999999999999
Q ss_pred CCCCcEEEEcCeEEEEecCCcCCCccHHHHhhcCCCCCHHHHHHHHHHhCCchhhhhCCCCCccccccCCCCCCHHHHHH
Q 037346 411 PKESGIIRLCGTKAYVAQSPWIQSGKIEENILFGKEMDRERYERVLEACSLKKDLEVLPFGDQTIIGERGINLSGGQKQR 490 (1156)
Q Consensus 411 ~~~~G~i~~~g~~~~v~Q~~~~~~~ti~eni~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~t~v~~~g~~LSgGqkqR 490 (1156)
+|++|+|.++|.++|++|++++++.|++||+.++......++...++++++.+.+..+|.+.++.+++++.+||||||||
T Consensus 88 ~p~~G~I~i~g~i~yv~q~~~l~~~tv~enl~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~~~~~~~~LSgGq~qr 167 (282)
T cd03291 88 EPSEGKIKHSGRISFSSQFSWIMPGTIKENIIFGVSYDEYRYKSVVKACQLEEDITKFPEKDNTVLGEGGITLSGGQRAR 167 (282)
T ss_pred CCCCcEEEECCEEEEEeCcccccccCHHHHhhcccccCHHHHHHHHHHhCCHHHHHhccccccceecCCCCcCCHHHHHH
Confidence 99999999999999999999999999999999876555556677788889988888899998899999999999999999
Q ss_pred HHHHHhhccCCCeeeeeCCCCCcCHHHHHHHHHHHHh--cCCCEEEEEccCCCccccCCEEEEEeCCeEEEccChHHHHh
Q 037346 491 IQIARPLYQDADIFLLDDPFSPVDDHTGAHLFKFCWV--SSSKTVIYATHQVEFLPAADLILVIKDGKITQAGKYSDILN 568 (1156)
Q Consensus 491 i~lAral~~~~~illlDep~s~lD~~~~~~i~~~~~~--~~~~tvi~vtH~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~ 568 (1156)
++|||||+.+|+++||||||++||+.++..+.+.++. .+++|+|++||+++.+..||++++|++|++++.|+++++..
T Consensus 168 v~lAraL~~~p~iLiLDEPt~gLD~~~~~~l~~~ll~~~~~~~tIiiisH~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 247 (282)
T cd03291 168 ISLARAVYKDADLYLLDSPFGYLDVFTEKEIFESCVCKLMANKTRILVTSKMEHLKKADKILILHEGSSYFYGTFSELQS 247 (282)
T ss_pred HHHHHHHhcCCCEEEEECCCccCCHHHHHHHHHHHHHHhhCCCEEEEEeCChHHHHhCCEEEEEECCEEEEECCHHHHHh
Confidence 9999999999999999999999999999888775432 35789999999999888899999999999999999998875
Q ss_pred cCcchH
Q 037346 569 SGTDFM 574 (1156)
Q Consensus 569 ~~~~~~ 574 (1156)
....+.
T Consensus 248 ~~~~~~ 253 (282)
T cd03291 248 LRPDFS 253 (282)
T ss_pred cchHHH
Confidence 433343
|
The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits, or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2. |
| >cd03252 ABCC_Hemolysin The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-40 Score=361.38 Aligned_cols=217 Identities=29% Similarity=0.405 Sum_probs=191.6
Q ss_pred EEEeeeEEEeCCCCCCCccccceEEeeCCeEEEEEcCCCCChHHHHHHHhCCCCCCCcEEEEcCe-------------EE
Q 037346 358 IEIIDGSFSWDFSSPNPTLRNINLKVFHGMRVAVCGTVGSGKSSCLSCILGGVPKESGIIRLCGT-------------KA 424 (1156)
Q Consensus 358 i~~~~~~f~~~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKSTll~~i~g~~~~~~G~i~~~g~-------------~~ 424 (1156)
++++|+++.|+.. ++++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|. ++
T Consensus 1 i~~~~l~~~~~~~-~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 79 (237)
T cd03252 1 ITFEHVRFRYKPD-GPVILDNISLRIKPGEVVGIVGRSGSGKSTLTKLIQRFYVPENGRVLVDGHDLALADPAWLRRQVG 79 (237)
T ss_pred CEEEEEEEecCCC-CccceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCeehHhcCHHHHhhcEE
Confidence 4689999999632 357999999999999999999999999999999999999999999999882 79
Q ss_pred EEecCCcCCCccHHHHhhcCCC-CCHHHHHHHHHHhCCchhhhhCCCCCccccccCCCCCCHHHHHHHHHHHhhccCCCe
Q 037346 425 YVAQSPWIQSGKIEENILFGKE-MDRERYERVLEACSLKKDLEVLPFGDQTIIGERGINLSGGQKQRIQIARPLYQDADI 503 (1156)
Q Consensus 425 ~v~Q~~~~~~~ti~eni~~~~~-~~~~~~~~~~~~~~l~~~~~~~~~g~~t~v~~~g~~LSgGqkqRi~lAral~~~~~i 503 (1156)
|++|++++++.|++||+.++.. ...++..+.++..++.+.++.+|.|.++..++++.+|||||||||+||||++.+|++
T Consensus 80 ~~~q~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~LSgG~~qrv~laral~~~p~l 159 (237)
T cd03252 80 VVLQENVLFNRSIRDNIALADPGMSMERVIEAAKLAGAHDFISELPEGYDTIVGEQGAGLSGGQRQRIAIARALIHNPRI 159 (237)
T ss_pred EEcCCchhccchHHHHhhccCCCCCHHHHHHHHHHcCcHHHHHhCcccccchhhcCCCcCCHHHHHHHHHHHHHhhCCCE
Confidence 9999999998999999998653 344455566677788888888998988888999999999999999999999999999
Q ss_pred eeeeCCCCCcCHHHHHHHHHHHHh-cCCCEEEEEccCCCccccCCEEEEEeCCeEEEccChHHHHhcCcchHH
Q 037346 504 FLLDDPFSPVDDHTGAHLFKFCWV-SSSKTVIYATHQVEFLPAADLILVIKDGKITQAGKYSDILNSGTDFME 575 (1156)
Q Consensus 504 lllDep~s~lD~~~~~~i~~~~~~-~~~~tvi~vtH~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~~~~~~~ 575 (1156)
+||||||++||+.+++.+.+.+.. .+|+|+|++||+++.+..||++++|++|++++.|+++++.+..+.|..
T Consensus 160 lllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sH~~~~~~~~d~v~~l~~G~i~~~~~~~~~~~~~~~~~~ 232 (237)
T cd03252 160 LIFDEATSALDYESEHAIMRNMHDICAGRTVIIIAHRLSTVKNADRIIVMEKGRIVEQGSHDELLAENGLYAY 232 (237)
T ss_pred EEEeCCcccCCHHHHHHHHHHHHHhcCCCEEEEEeCCHHHHHhCCEEEEEECCEEEEEcCHHHHHhccChHHH
Confidence 999999999999999998887644 358999999999999877999999999999999999998866544444
|
coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy. |
| >COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.4e-41 Score=342.58 Aligned_cols=198 Identities=31% Similarity=0.434 Sum_probs=172.6
Q ss_pred cEEEeeeEEEeCCCCCCCccccceEEeeCCeEEEEEcCCCCChHHHHHHHhCCCCCCCcEEEEcC---------------
Q 037346 357 AIEIIDGSFSWDFSSPNPTLRNINLKVFHGMRVAVCGTVGSGKSSCLSCILGGVPKESGIIRLCG--------------- 421 (1156)
Q Consensus 357 ~i~~~~~~f~~~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKSTll~~i~g~~~~~~G~i~~~g--------------- 421 (1156)
.|+++|++..|| +++.+|+||||+|++||+++|+|+|||||||||++|.|+.+|++|+|.++|
T Consensus 3 ~i~~~nl~k~yp--~~~~aL~~Vnl~I~~GE~VaiIG~SGaGKSTLLR~lngl~d~t~G~i~~~g~~i~~~~~k~lr~~r 80 (258)
T COG3638 3 MIEVKNLSKTYP--GGHQALKDVNLEINQGEMVAIIGPSGAGKSTLLRSLNGLVDPTSGEILFNGVQITKLKGKELRKLR 80 (258)
T ss_pred eEEEeeeeeecC--CCceeeeeEeEEeCCCcEEEEECCCCCcHHHHHHHHhcccCCCcceEEecccchhccchHHHHHHH
Confidence 589999999998 367899999999999999999999999999999999999999999999998
Q ss_pred -eEEEEecCCcCC-CccHHHHhhcCCC------------CCHH---HHHHHHHHhCCchhhhhCCCCCccccccCCCCCC
Q 037346 422 -TKAYVAQSPWIQ-SGKIEENILFGKE------------MDRE---RYERVLEACSLKKDLEVLPFGDQTIIGERGINLS 484 (1156)
Q Consensus 422 -~~~~v~Q~~~~~-~~ti~eni~~~~~------------~~~~---~~~~~~~~~~l~~~~~~~~~g~~t~v~~~g~~LS 484 (1156)
++||++|++.|. ..||.+|++.|+- ++++ ..-++++..++.+... .+..+||
T Consensus 81 ~~iGmIfQ~~nLv~r~sv~~NVl~grl~~~s~~~slfglfsk~dk~~Al~aLervgi~~~A~-----------qra~~LS 149 (258)
T COG3638 81 RDIGMIFQQFNLVPRLSVLENVLLGRLGYTSTWRSLFGLFSKEDKAQALDALERVGILDKAY-----------QRASTLS 149 (258)
T ss_pred HhceeEeccCCcccccHHHHHHHhhhcccchHHHHHhCCCCHHHHHHHHHHHHHcCcHHHHH-----------HHhccCC
Confidence 379999999875 5699999998742 2333 3334566666655432 3557899
Q ss_pred HHHHHHHHHHHhhccCCCeeeeeCCCCCcCHHHHHHHHHHHHh---cCCCEEEEEccCCCccc-cCCEEEEEeCCeEEEc
Q 037346 485 GGQKQRIQIARPLYQDADIFLLDDPFSPVDDHTGAHLFKFCWV---SSSKTVIYATHQVEFLP-AADLILVIKDGKITQA 560 (1156)
Q Consensus 485 gGqkqRi~lAral~~~~~illlDep~s~lD~~~~~~i~~~~~~---~~~~tvi~vtH~~~~~~-~~d~i~~l~~G~i~~~ 560 (1156)
|||+|||+|||||+++|+++|-|||+++|||.+.+++++.+.. ..|.|+|+.-|++++.. +||||+-|++|+|+++
T Consensus 150 GGQQQRVaIARaL~Q~pkiILADEPvasLDp~~a~~Vm~~l~~in~~~g~Tvi~nLH~vdlA~~Y~~Riigl~~G~ivfD 229 (258)
T COG3638 150 GGQQQRVAIARALVQQPKIILADEPVASLDPESAKKVMDILKDINQEDGITVIVNLHQVDLAKKYADRIIGLKAGRIVFD 229 (258)
T ss_pred cchhHHHHHHHHHhcCCCEEecCCcccccChhhHHHHHHHHHHHHHHcCCEEEEEechHHHHHHHHhhheEecCCcEEEe
Confidence 9999999999999999999999999999999999999987643 57899999999999985 6999999999999999
Q ss_pred cChHHHH
Q 037346 561 GKYSDIL 567 (1156)
Q Consensus 561 g~~~~l~ 567 (1156)
|+.+++-
T Consensus 230 g~~~el~ 236 (258)
T COG3638 230 GPASELT 236 (258)
T ss_pred CChhhhh
Confidence 9998854
|
|
| >cd03250 ABCC_MRP_domain1 Domain 1 of the ABC subfamily C | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-40 Score=353.77 Aligned_cols=199 Identities=57% Similarity=0.943 Sum_probs=181.1
Q ss_pred EEEeeeEEEeCCCCC--CCccccceEEeeCCeEEEEEcCCCCChHHHHHHHhCCCCCCCcEEEEcCeEEEEecCCcCCCc
Q 037346 358 IEIIDGSFSWDFSSP--NPTLRNINLKVFHGMRVAVCGTVGSGKSSCLSCILGGVPKESGIIRLCGTKAYVAQSPWIQSG 435 (1156)
Q Consensus 358 i~~~~~~f~~~~~~~--~~~l~~i~l~i~~g~~~~ivG~~GsGKSTll~~i~g~~~~~~G~i~~~g~~~~v~Q~~~~~~~ 435 (1156)
++++|+++.|+...+ .++|+|+||+|++|++++|+||||||||||+++|+|+++|++|+|.++|+++|++|+|.+++.
T Consensus 1 l~~~~l~~~~~~~~~~~~~il~~~s~~i~~G~~~~i~G~nG~GKSTLl~~i~G~~~~~~G~i~~~g~i~~~~q~~~l~~~ 80 (204)
T cd03250 1 ISVEDASFTWDSGEQETSFTLKDINLEVPKGELVAIVGPVGSGKSSLLSALLGELEKLSGSVSVPGSIAYVSQEPWIQNG 80 (204)
T ss_pred CEEeEEEEecCCCCccccceeeeeeEEECCCCEEEEECCCCCCHHHHHHHHhCcCCCCCCeEEEcCEEEEEecCchhccC
Confidence 468999999964211 369999999999999999999999999999999999999999999999999999999999999
Q ss_pred cHHHHhhcCCCCCHHHHHHHHHHhCCchhhhhCCCCCccccccCCCCCCHHHHHHHHHHHhhccCCCeeeeeCCCCCcCH
Q 037346 436 KIEENILFGKEMDRERYERVLEACSLKKDLEVLPFGDQTIIGERGINLSGGQKQRIQIARPLYQDADIFLLDDPFSPVDD 515 (1156)
Q Consensus 436 ti~eni~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~t~v~~~g~~LSgGqkqRi~lAral~~~~~illlDep~s~lD~ 515 (1156)
|++||+.++...+.++..++.+.+++.+.+..+|.|+++.+++.+.+||||||||++||||++.+|+++||||||++||+
T Consensus 81 t~~enl~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~lS~G~~qrv~laral~~~p~llllDEP~~~LD~ 160 (204)
T cd03250 81 TIRENILFGKPFDEERYEKVIKACALEPDLEILPDGDLTEIGEKGINLSGGQKQRISLARAVYSDADIYLLDDPLSAVDA 160 (204)
T ss_pred cHHHHhccCCCcCHHHHHHHHHHcCcHHHHHhccCcccceecCCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCH
Confidence 99999999876666677788888899999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHh---cCCCEEEEEccCCCccccCCEEEEEeCCe
Q 037346 516 HTGAHLFKFCWV---SSSKTVIYATHQVEFLPAADLILVIKDGK 556 (1156)
Q Consensus 516 ~~~~~i~~~~~~---~~~~tvi~vtH~~~~~~~~d~i~~l~~G~ 556 (1156)
...+.+++.++. .+++|+|++||+++.+..||++++|++|+
T Consensus 161 ~~~~~l~~~ll~~~~~~~~tvi~~sh~~~~~~~~d~i~~l~~G~ 204 (204)
T cd03250 161 HVGRHIFENCILGLLLNNKTRILVTHQLQLLPHADQIVVLDNGR 204 (204)
T ss_pred HHHHHHHHHHHHHhccCCCEEEEEeCCHHHHhhCCEEEEEeCCC
Confidence 999888875432 34789999999999887799999999985
|
This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate. |
| >COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-40 Score=340.69 Aligned_cols=202 Identities=26% Similarity=0.413 Sum_probs=173.8
Q ss_pred cEEEeeeEEEeCCCC-CCCccccceEEeeCCeEEEEEcCCCCChHHHHHHHhCCCCCCCcEEEEcCe-------------
Q 037346 357 AIEIIDGSFSWDFSS-PNPTLRNINLKVFHGMRVAVCGTVGSGKSSCLSCILGGVPKESGIIRLCGT------------- 422 (1156)
Q Consensus 357 ~i~~~~~~f~~~~~~-~~~~l~~i~l~i~~g~~~~ivG~~GsGKSTll~~i~g~~~~~~G~i~~~g~------------- 422 (1156)
.++++|+++.|+... -.++++||||+|.+||+++|+|+||||||||.++|+|+.+|++|+|.++|+
T Consensus 3 ~l~v~nl~~~y~~~~~~~~~l~~VS~~i~~Ge~lgivGeSGsGKSTL~r~l~Gl~~p~~G~I~~~G~~~~~~~~~~~~~~ 82 (252)
T COG1124 3 LLSVRNLSIVYGGGKFAFHALNNVSLEIERGETLGIVGESGSGKSTLARLLAGLEKPSSGSILLDGKPLAPKKRAKAFYR 82 (252)
T ss_pred eEEEeceEEEecCCcchhhhhcceeEEecCCCEEEEEcCCCCCHHHHHHHHhcccCCCCceEEECCcccCccccchhhcc
Confidence 589999999997421 114999999999999999999999999999999999999999999999993
Q ss_pred -EEEEecCCcC---CCccHHHHhhcCC-----CCCHHHHHHHHHHhCCchh-hhhCCCCCccccccCCCCCCHHHHHHHH
Q 037346 423 -KAYVAQSPWI---QSGKIEENILFGK-----EMDRERYERVLEACSLKKD-LEVLPFGDQTIIGERGINLSGGQKQRIQ 492 (1156)
Q Consensus 423 -~~~v~Q~~~~---~~~ti~eni~~~~-----~~~~~~~~~~~~~~~l~~~-~~~~~~g~~t~v~~~g~~LSgGqkqRi~ 492 (1156)
+-+|+|+|.- +..||++-|.-+. +..+++..++++..+|.+. +.+.| .+||||||||||
T Consensus 83 ~VQmVFQDp~~SLnP~~tv~~~l~Epl~~~~~~~~~~~i~~~L~~VgL~~~~l~R~P-----------~eLSGGQ~QRia 151 (252)
T COG1124 83 PVQMVFQDPYSSLNPRRTVGRILSEPLRPHGLSKSQQRIAELLDQVGLPPSFLDRRP-----------HELSGGQRQRIA 151 (252)
T ss_pred ceeEEecCCccccCcchhHHHHHhhhhccCCccHHHHHHHHHHHHcCCCHHHHhcCc-----------hhcChhHHHHHH
Confidence 5799999962 4458888776432 2234567889999999764 44444 689999999999
Q ss_pred HHHhhccCCCeeeeeCCCCCcCHHHHHHHHHHHHh---cCCCEEEEEccCCCcccc-CCEEEEEeCCeEEEccChHHHHh
Q 037346 493 IARPLYQDADIFLLDDPFSPVDDHTGAHLFKFCWV---SSSKTVIYATHQVEFLPA-ADLILVIKDGKITQAGKYSDILN 568 (1156)
Q Consensus 493 lAral~~~~~illlDep~s~lD~~~~~~i~~~~~~---~~~~tvi~vtH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~~ 568 (1156)
|||||..+|++||||||||+||+.++.+|++.+.. ..+-|.|+||||+..+.+ ||||++|++|++++.++.+++..
T Consensus 152 IARAL~~~PklLIlDEptSaLD~siQa~IlnlL~~l~~~~~lt~l~IsHdl~~v~~~cdRi~Vm~~G~ivE~~~~~~l~~ 231 (252)
T COG1124 152 IARALIPEPKLLILDEPTSALDVSVQAQILNLLLELKKERGLTYLFISHDLALVEHMCDRIAVMDNGQIVEIGPTEELLS 231 (252)
T ss_pred HHHHhccCCCEEEecCchhhhcHHHHHHHHHHHHHHHHhcCceEEEEeCcHHHHHHHhhheeeeeCCeEEEeechhhhhc
Confidence 99999999999999999999999999999887654 456799999999999976 99999999999999999999876
Q ss_pred c
Q 037346 569 S 569 (1156)
Q Consensus 569 ~ 569 (1156)
.
T Consensus 232 ~ 232 (252)
T COG1124 232 H 232 (252)
T ss_pred C
Confidence 5
|
|
| >COG1122 CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-40 Score=354.48 Aligned_cols=200 Identities=35% Similarity=0.513 Sum_probs=178.5
Q ss_pred cEEEeeeEEEeCCCCCCCccccceEEeeCCeEEEEEcCCCCChHHHHHHHhCCCCCCCcEEEEcCe--------------
Q 037346 357 AIEIIDGSFSWDFSSPNPTLRNINLKVFHGMRVAVCGTVGSGKSSCLSCILGGVPKESGIIRLCGT-------------- 422 (1156)
Q Consensus 357 ~i~~~~~~f~~~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKSTll~~i~g~~~~~~G~i~~~g~-------------- 422 (1156)
.++++|++|+|+.+ .++|+|+|++|++|+.++|+|+||||||||++++.|+++|++|.|.++|.
T Consensus 3 ~i~~~~l~~~y~~~--~~~l~~v~~~i~~Ge~~~i~G~nGsGKSTL~~~l~GLl~p~~G~v~~~g~~~~~~~~~~~~~~~ 80 (235)
T COG1122 3 MIEAENLSFRYPGR--KAALKDVSLEIEKGERVLLIGPNGSGKSTLLKLLNGLLKPTSGEVLVDGLDTSSEKSLLELRQK 80 (235)
T ss_pred eEEEEEEEEEcCCC--ceeeeeeEEEECCCCEEEEECCCCCCHHHHHHHHcCcCcCCCCEEEECCeeccchhhHHHhhcc
Confidence 58899999999743 68999999999999999999999999999999999999999999999883
Q ss_pred EEEEecCC--cCCCccHHHHhhcCCC---CC----HHHHHHHHHHhCCchhhhhCCCCCccccccCCCCCCHHHHHHHHH
Q 037346 423 KAYVAQSP--WIQSGKIEENILFGKE---MD----RERYERVLEACSLKKDLEVLPFGDQTIIGERGINLSGGQKQRIQI 493 (1156)
Q Consensus 423 ~~~v~Q~~--~~~~~ti~eni~~~~~---~~----~~~~~~~~~~~~l~~~~~~~~~g~~t~v~~~g~~LSgGqkqRi~l 493 (1156)
+|||+|+| .+|..||.|.+.||.. .+ +++..++++.|++.+..+..| .+|||||||||||
T Consensus 81 vG~VfQnpd~q~~~~tV~~evafg~~n~g~~~~e~~~rv~~~l~~vgl~~~~~r~p-----------~~LSGGqkqRvaI 149 (235)
T COG1122 81 VGLVFQNPDDQLFGPTVEDEVAFGLENLGLPREEIEERVAEALELVGLEELLDRPP-----------FNLSGGQKQRVAI 149 (235)
T ss_pred eEEEEECcccccccCcHHHHHhhchhhcCCCHHHHHHHHHHHHHHcCchhhccCCc-----------cccCCcceeeHHh
Confidence 79999999 5788999999999853 22 356778899999987765444 6899999999999
Q ss_pred HHhhccCCCeeeeeCCCCCcCHHHHHHHHHHHHh---cCCCEEEEEccCCCcccc-CCEEEEEeCCeEEEccChHHHHhc
Q 037346 494 ARPLYQDADIFLLDDPFSPVDDHTGAHLFKFCWV---SSSKTVIYATHQVEFLPA-ADLILVIKDGKITQAGKYSDILNS 569 (1156)
Q Consensus 494 Aral~~~~~illlDep~s~lD~~~~~~i~~~~~~---~~~~tvi~vtH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~~~ 569 (1156)
|.+|..+|+++|||||||+||+..++.+.+.+.. ..|+|+|++|||++.+.. ||++++|++|+++.+|+++++.+.
T Consensus 150 A~vLa~~P~iliLDEPta~LD~~~~~~l~~~l~~L~~~~~~tii~~tHd~~~~~~~ad~v~vl~~G~i~~~g~p~~i~~~ 229 (235)
T COG1122 150 AGVLAMGPEILLLDEPTAGLDPKGRRELLELLKKLKEEGGKTIIIVTHDLELVLEYADRVVVLDDGKILADGDPAEIFND 229 (235)
T ss_pred hHHHHcCCCEEEEcCCCCCCCHHHHHHHHHHHHHHHhcCCCeEEEEeCcHHHHHhhCCEEEEEECCEEeecCCHHHHhhh
Confidence 9999999999999999999999999999887644 336899999999999865 999999999999999999888754
|
|
| >COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-40 Score=326.02 Aligned_cols=191 Identities=27% Similarity=0.404 Sum_probs=171.4
Q ss_pred EEEeeeEEEeCCCCCCCccccceEEeeCCeEEEEEcCCCCChHHHHHHHhCCCCCCCcEEEEcC----------------
Q 037346 358 IEIIDGSFSWDFSSPNPTLRNINLKVFHGMRVAVCGTVGSGKSSCLSCILGGVPKESGIIRLCG---------------- 421 (1156)
Q Consensus 358 i~~~~~~f~~~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKSTll~~i~g~~~~~~G~i~~~g---------------- 421 (1156)
|+|+||++.|+. +.++|+|+||+|++||++.|+||||||||||+++|.++..|+.|+|.++|
T Consensus 2 I~f~~V~k~Y~~--g~~aL~~vs~~i~~Gef~fl~GpSGAGKSTllkLi~~~e~pt~G~i~~~~~dl~~l~~~~iP~LRR 79 (223)
T COG2884 2 IRFENVSKAYPG--GREALRDVSFHIPKGEFVFLTGPSGAGKSTLLKLIYGEERPTRGKILVNGHDLSRLKGREIPFLRR 79 (223)
T ss_pred eeehhhhhhcCC--CchhhhCceEeecCceEEEEECCCCCCHHHHHHHHHhhhcCCCceEEECCeecccccccccchhhh
Confidence 789999999984 36799999999999999999999999999999999999999999999998
Q ss_pred eEEEEecCCcCC-CccHHHHhhcCCCC-------CHHHHHHHHHHhCCchhhhhCCCCCccccccCCCCCCHHHHHHHHH
Q 037346 422 TKAYVAQSPWIQ-SGKIEENILFGKEM-------DRERYERVLEACSLKKDLEVLPFGDQTIIGERGINLSGGQKQRIQI 493 (1156)
Q Consensus 422 ~~~~v~Q~~~~~-~~ti~eni~~~~~~-------~~~~~~~~~~~~~l~~~~~~~~~g~~t~v~~~g~~LSgGqkqRi~l 493 (1156)
+||+|+|+.-+. .-||.||++|.... -+++..++++.++|.+....+| .+||||||||++|
T Consensus 80 ~IGvVFQD~rLL~~~tvyeNVA~pL~v~G~~~~~i~~rV~~~L~~VgL~~k~~~lP-----------~~LSGGEQQRvaI 148 (223)
T COG2884 80 QIGVVFQDFRLLPDRTVYENVALPLRVIGKPPREIRRRVSEVLDLVGLKHKARALP-----------SQLSGGEQQRVAI 148 (223)
T ss_pred eeeeEeeeccccccchHhhhhhhhhhccCCCHHHHHHHHHHHHHHhccchhhhcCc-----------cccCchHHHHHHH
Confidence 379999998764 56999999996431 2466778999999999988888 5899999999999
Q ss_pred HHhhccCCCeeeeeCCCCCcCHHHHHHHHHHHH--hcCCCEEEEEccCCCcccc-CCEEEEEeCCeEEEcc
Q 037346 494 ARPLYQDADIFLLDDPFSPVDDHTGAHLFKFCW--VSSSKTVIYATHQVEFLPA-ADLILVIKDGKITQAG 561 (1156)
Q Consensus 494 Aral~~~~~illlDep~s~lD~~~~~~i~~~~~--~~~~~tvi~vtH~~~~~~~-~d~i~~l~~G~i~~~g 561 (1156)
|||+..+|++||-||||.+|||.....|++... ...|.||+++|||.+.+.. --+++.+++|+++...
T Consensus 149 ARAiV~~P~vLlADEPTGNLDp~~s~~im~lfeeinr~GtTVl~ATHd~~lv~~~~~rvl~l~~Grl~~d~ 219 (223)
T COG2884 149 ARAIVNQPAVLLADEPTGNLDPDLSWEIMRLFEEINRLGTTVLMATHDLELVNRMRHRVLALEDGRLVRDE 219 (223)
T ss_pred HHHHccCCCeEeecCCCCCCChHHHHHHHHHHHHHhhcCcEEEEEeccHHHHHhccCcEEEEeCCEEEecc
Confidence 999999999999999999999999999987653 3679999999999999875 6799999999998643
|
|
| >KOG0062 consensus ATPase component of ABC transporters with duplicated ATPase domains/Translation elongation factor EF-3b [Amino acid transport and metabolism; Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-39 Score=362.22 Aligned_cols=171 Identities=21% Similarity=0.297 Sum_probs=139.3
Q ss_pred CCeEEEEEEEEEEcCCCC---------------ceeeCCCCCCHHHHHHHHhhcccCCCceEEEcCeeCCCCChHHHhhc
Q 037346 945 HGEVNIRHLQVRYAPNLP---------------LVLRGRTGSGKSTLIQTLFRIVESTAGHILIDGKDISLIGLHDLRTR 1009 (1156)
Q Consensus 945 ~g~I~~~~Vsf~Y~~~~~---------------~vL~G~SGsGKSTL~~lL~rl~~p~~G~I~idG~di~~i~~~~LR~~ 1009 (1156)
...+++.+|+|.|.|+.+ ...+|++|+||||+++++.+-.+|..|.+-+.+ |.+
T Consensus 360 ~p~l~i~~V~f~y~p~~y~~~~~~~~d~e~~sRi~~vg~ng~gkst~lKi~~~~l~~~rgi~~~~~-----------r~r 428 (582)
T KOG0062|consen 360 PPNLRISYVAFEYTPSEYQWRKQLGLDRESDSRISRVGENGDGKSTLLKILKGDLTPTRGIVGRHP-----------RLR 428 (582)
T ss_pred CCeeEEEeeeccCCCcchhhhhccCCccchhhhhheeccCchhHHHHHHHHhccCCcccceeeecc-----------cce
Confidence 457899999999998874 235599999999999999999999999998876 788
Q ss_pred Ceeeccccccc-cccchhccC----CCCCCCHHHHHHHHHHcCCChHHHhhcCCcccc--------ccccccCCCEEEEe
Q 037346 1010 LSIIPQDPTMF-EGTTRSNLD----PLEEHADEQIWEALDKCQLGDEVRKKKGKLDSQ--------GRVLLKKSKVLVLD 1076 (1156)
Q Consensus 1010 i~~VpQdp~LF-~gTIr~Nl~----~~~~~~deei~~al~~~~l~~~i~~lp~gl~s~--------ARALLr~~~ILiLD 1076 (1156)
|++-.|..+=| +-.+-. +| .+.-.++||+++.|...|+...+...+-.-.|+ |-....+|.+||||
T Consensus 429 i~~f~Qhhvd~l~~~v~~-vd~~~~~~pG~~~ee~r~hl~~~Gl~g~la~~si~~LSGGQKsrvafA~~~~~~PhlLVLD 507 (582)
T KOG0062|consen 429 IKYFAQHHVDFLDKNVNA-VDFMEKSFPGKTEEEIRRHLGSFGLSGELALQSIASLSGGQKSRVAFAACTWNNPHLLVLD 507 (582)
T ss_pred ecchhHhhhhHHHHHhHH-HHHHHHhCCCCCHHHHHHHHHhcCCCchhhhccccccCCcchhHHHHHHHhcCCCcEEEec
Confidence 99999977533 211111 11 112237999999999999998887666333333 56778899999999
Q ss_pred cCCcCCCHHHHHHHHHHHHHhcCCceEEEeecCcccccc-cCEEEEEeCcEEee
Q 037346 1077 EATASVDTATDNQIQQTLRQHFSDCTVVTIAHRITSVLD-SAMVLLLNHGLIKE 1129 (1156)
Q Consensus 1077 EaTS~LD~~te~~I~~~l~~~~~~~TvI~IaHrl~ti~~-~D~I~Vl~~G~IvE 1129 (1156)
|||.+||.++-..+-++|+.. +.-||+|+|+.+.|.. |+.++|.++|+|.-
T Consensus 508 EPTNhLD~dsl~AL~~Al~~F--~GGVv~VSHd~~fi~~~c~E~Wvve~g~vt~ 559 (582)
T KOG0062|consen 508 EPTNHLDRDSLGALAKALKNF--NGGVVLVSHDEEFISSLCKELWVVEDGKVTP 559 (582)
T ss_pred CCCccccHHHHHHHHHHHHhc--CCcEEEEECcHHHHhhcCceeEEEcCCcEEe
Confidence 999999999999999999876 5679999999999986 99999999999986
|
|
| >cd03249 ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1 | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-39 Score=355.79 Aligned_cols=213 Identities=33% Similarity=0.488 Sum_probs=189.1
Q ss_pred EEEeeeEEEeCCCCCCCccccceEEeeCCeEEEEEcCCCCChHHHHHHHhCCCCCCCcEEEEcC-------------eEE
Q 037346 358 IEIIDGSFSWDFSSPNPTLRNINLKVFHGMRVAVCGTVGSGKSSCLSCILGGVPKESGIIRLCG-------------TKA 424 (1156)
Q Consensus 358 i~~~~~~f~~~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKSTll~~i~g~~~~~~G~i~~~g-------------~~~ 424 (1156)
++++|+++.|+...++++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++| .++
T Consensus 1 l~i~~l~~~~~~~~~~~~l~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 80 (238)
T cd03249 1 IEFKNVSFRYPSRPDVPILKGLSLTIPPGKTVALVGSSGCGKSTVVSLLERFYDPTSGEILLDGVDIRDLNLRWLRSQIG 80 (238)
T ss_pred CeEEEEEEecCCCCCccceeceEEEecCCCEEEEEeCCCCCHHHHHHHHhccCCCCCCEEEECCEehhhcCHHHHHhhEE
Confidence 4689999999743335799999999999999999999999999999999999999999999988 279
Q ss_pred EEecCCcCCCccHHHHhhcCCC-CCHHHHHHHHHHhCCchhhhhCCCCCccccccCCCCCCHHHHHHHHHHHhhccCCCe
Q 037346 425 YVAQSPWIQSGKIEENILFGKE-MDRERYERVLEACSLKKDLEVLPFGDQTIIGERGINLSGGQKQRIQIARPLYQDADI 503 (1156)
Q Consensus 425 ~v~Q~~~~~~~ti~eni~~~~~-~~~~~~~~~~~~~~l~~~~~~~~~g~~t~v~~~g~~LSgGqkqRi~lAral~~~~~i 503 (1156)
|++|+|.+++.|++||+.++.. ...++..+.++.+++.+.+..+|.|.++.++....+||||||||++||||++.+|++
T Consensus 81 ~~~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~LS~G~~qrv~la~al~~~p~l 160 (238)
T cd03249 81 LVSQEPVLFDGTIAENIRYGKPDATDEEVEEAAKKANIHDFIMSLPDGYDTLVGERGSQLSGGQKQRIAIARALLRNPKI 160 (238)
T ss_pred EECCchhhhhhhHHHHhhccCCCCCHHHHHHHHHHcChHHHHHhhccccceeeccCCccCCHHHHHHHHHHHHHhcCCCE
Confidence 9999999888899999998753 234555667777888888888998999989999999999999999999999999999
Q ss_pred eeeeCCCCCcCHHHHHHHHHHHHh-cCCCEEEEEccCCCccccCCEEEEEeCCeEEEccChHHHHhcC
Q 037346 504 FLLDDPFSPVDDHTGAHLFKFCWV-SSSKTVIYATHQVEFLPAADLILVIKDGKITQAGKYSDILNSG 570 (1156)
Q Consensus 504 lllDep~s~lD~~~~~~i~~~~~~-~~~~tvi~vtH~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~~ 570 (1156)
+||||||++||+.+++.+.+.+.. .+|+|+|++||+++.+..||++++|++|++++.|+.+++....
T Consensus 161 lllDEP~~gLD~~~~~~l~~~l~~~~~g~~vi~~sh~~~~~~~~d~v~~l~~G~i~~~~~~~~~~~~~ 228 (238)
T cd03249 161 LLLDEATSALDAESEKLVQEALDRAMKGRTTIVIAHRLSTIRNADLIAVLQNGQVVEQGTHDELMAQK 228 (238)
T ss_pred EEEeCccccCCHHHHHHHHHHHHHhcCCCEEEEEeCCHHHHhhCCEEEEEECCEEEEeCCHHHHhhcC
Confidence 999999999999999988876643 3688999999999988889999999999999999988876543
|
In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another. |
| >cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-39 Score=353.75 Aligned_cols=210 Identities=31% Similarity=0.471 Sum_probs=189.5
Q ss_pred cEEEeeeEEEeCCCCCCCccccceEEeeCCeEEEEEcCCCCChHHHHHHHhCCCCCCCcEEEEcC-------------eE
Q 037346 357 AIEIIDGSFSWDFSSPNPTLRNINLKVFHGMRVAVCGTVGSGKSSCLSCILGGVPKESGIIRLCG-------------TK 423 (1156)
Q Consensus 357 ~i~~~~~~f~~~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKSTll~~i~g~~~~~~G~i~~~g-------------~~ 423 (1156)
.++++|++++|+. .+++++|+||++++|++++|+||||||||||+++|+|+++|++|+|.++| .+
T Consensus 2 ~l~~~~l~~~~~~--~~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i 79 (229)
T cd03254 2 EIEFENVNFSYDE--KKPVLKDINFSIKPGETVAIVGPTGAGKTTLINLLMRFYDPQKGQILIDGIDIRDISRKSLRSMI 79 (229)
T ss_pred eEEEEEEEEecCC--CCccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCEeHHHcCHHHHhhhE
Confidence 4889999999962 34699999999999999999999999999999999999999999999987 27
Q ss_pred EEEecCCcCCCccHHHHhhcCCC-CCHHHHHHHHHHhCCchhhhhCCCCCccccccCCCCCCHHHHHHHHHHHhhccCCC
Q 037346 424 AYVAQSPWIQSGKIEENILFGKE-MDRERYERVLEACSLKKDLEVLPFGDQTIIGERGINLSGGQKQRIQIARPLYQDAD 502 (1156)
Q Consensus 424 ~~v~Q~~~~~~~ti~eni~~~~~-~~~~~~~~~~~~~~l~~~~~~~~~g~~t~v~~~g~~LSgGqkqRi~lAral~~~~~ 502 (1156)
+|++|+++++..|++||+.++.. ...++..+.++.+++.+.++.+|.|.++.++....+||||||||++|||||+.+|+
T Consensus 80 ~~~~q~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LS~G~~~rv~la~al~~~p~ 159 (229)
T cd03254 80 GVVLQDTFLFSGTIMENIRLGRPNATDEEVIEAAKEAGAHDFIMKLPNGYDTVLGENGGNLSQGERQLLAIARAMLRDPK 159 (229)
T ss_pred EEecCCchhhhhHHHHHHhccCCCCCHHHHHHHHHHhChHHHHHhCcccccCHhhcCCCcCCHHHHHHHHHHHHHhcCCC
Confidence 99999999988999999998754 34566777788889988899999999999999999999999999999999999999
Q ss_pred eeeeeCCCCCcCHHHHHHHHHHHHh-cCCCEEEEEccCCCccccCCEEEEEeCCeEEEccChHHHHh
Q 037346 503 IFLLDDPFSPVDDHTGAHLFKFCWV-SSSKTVIYATHQVEFLPAADLILVIKDGKITQAGKYSDILN 568 (1156)
Q Consensus 503 illlDep~s~lD~~~~~~i~~~~~~-~~~~tvi~vtH~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~ 568 (1156)
++||||||++||+.+++.+.+.+.. .+++|+|++||+++.+..||++++|++|++++.|+.+++..
T Consensus 160 llllDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~~d~i~~l~~g~~~~~~~~~~~~~ 226 (229)
T cd03254 160 ILILDEATSNIDTETEKLIQEALEKLMKGRTSIIIAHRLSTIKNADKILVLDDGKIIEEGTHDELLA 226 (229)
T ss_pred EEEEeCccccCCHHHHHHHHHHHHHhcCCCEEEEEecCHHHHhhCCEEEEEeCCeEEEeCCHHHHHh
Confidence 9999999999999999988876644 35899999999999887899999999999999998877654
|
In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03253 ABCC_ATM1_transporter ATM1 is an ABC transporter that is expressed in the mitochondria | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-39 Score=353.32 Aligned_cols=212 Identities=33% Similarity=0.515 Sum_probs=189.4
Q ss_pred EEEeeeEEEeCCCCCCCccccceEEeeCCeEEEEEcCCCCChHHHHHHHhCCCCCCCcEEEEcCe-------------EE
Q 037346 358 IEIIDGSFSWDFSSPNPTLRNINLKVFHGMRVAVCGTVGSGKSSCLSCILGGVPKESGIIRLCGT-------------KA 424 (1156)
Q Consensus 358 i~~~~~~f~~~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKSTll~~i~g~~~~~~G~i~~~g~-------------~~ 424 (1156)
++++|+++.|+. ++.+|+|+||+|++|++++|+||||||||||+++|+|+++|++|+|.++|. ++
T Consensus 1 l~~~~l~~~~~~--~~~~l~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~v~~~g~~~~~~~~~~~~~~i~ 78 (236)
T cd03253 1 IEFENVTFAYDP--GRPVLKDVSFTIPAGKKVAIVGPSGSGKSTILRLLFRFYDVSSGSILIDGQDIREVTLDSLRRAIG 78 (236)
T ss_pred CEEEEEEEEeCC--CCceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCEEEECCEEhhhCCHHHHHhhEE
Confidence 468999999962 356999999999999999999999999999999999999999999999882 78
Q ss_pred EEecCCcCCCccHHHHhhcCCC-CCHHHHHHHHHHhCCchhhhhCCCCCccccccCCCCCCHHHHHHHHHHHhhccCCCe
Q 037346 425 YVAQSPWIQSGKIEENILFGKE-MDRERYERVLEACSLKKDLEVLPFGDQTIIGERGINLSGGQKQRIQIARPLYQDADI 503 (1156)
Q Consensus 425 ~v~Q~~~~~~~ti~eni~~~~~-~~~~~~~~~~~~~~l~~~~~~~~~g~~t~v~~~g~~LSgGqkqRi~lAral~~~~~i 503 (1156)
|++|+|++++.|++||+.++.. .......+.++.+++.+.+..+|.|.++.+++++.+||||||||++|||||+.+|++
T Consensus 79 ~~~q~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~LS~G~~~rl~la~aL~~~p~l 158 (236)
T cd03253 79 VVPQDTVLFNDTIGYNIRYGRPDATDEEVIEAAKAAQIHDKIMRFPDGYDTIVGERGLKLSGGEKQRVAIARAILKNPPI 158 (236)
T ss_pred EECCCChhhcchHHHHHhhcCCCCCHHHHHHHHHHcCcHHHHHhccccccchhhcCCCcCCHHHHHHHHHHHHHhcCCCE
Confidence 9999999999999999998753 344456677788888888899999999999999999999999999999999999999
Q ss_pred eeeeCCCCCcCHHHHHHHHHHHHh-cCCCEEEEEccCCCccccCCEEEEEeCCeEEEccChHHHHhcCc
Q 037346 504 FLLDDPFSPVDDHTGAHLFKFCWV-SSSKTVIYATHQVEFLPAADLILVIKDGKITQAGKYSDILNSGT 571 (1156)
Q Consensus 504 lllDep~s~lD~~~~~~i~~~~~~-~~~~tvi~vtH~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~~~ 571 (1156)
+||||||++||+.+.+.+.+.+.. .+|+|+|++||+++.+..||++++|++|++++.|+.+++.....
T Consensus 159 lllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sh~~~~~~~~d~~~~l~~g~i~~~~~~~~~~~~~~ 227 (236)
T cd03253 159 LLLDEATSALDTHTEREIQAALRDVSKGRTTIVIAHRLSTIVNADKIIVLKDGRIVERGTHEELLAKGG 227 (236)
T ss_pred EEEeCCcccCCHHHHHHHHHHHHHhcCCCEEEEEcCCHHHHHhCCEEEEEECCEEEeeCCHHHHhhccc
Confidence 999999999999999988876644 23889999999999987799999999999999999888776443
|
Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-39 Score=353.36 Aligned_cols=213 Identities=33% Similarity=0.501 Sum_probs=189.8
Q ss_pred EEEeeeEEEeCCCCCCCccccceEEeeCCeEEEEEcCCCCChHHHHHHHhCCCCCCCcEEEEcCe-------------EE
Q 037346 358 IEIIDGSFSWDFSSPNPTLRNINLKVFHGMRVAVCGTVGSGKSSCLSCILGGVPKESGIIRLCGT-------------KA 424 (1156)
Q Consensus 358 i~~~~~~f~~~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKSTll~~i~g~~~~~~G~i~~~g~-------------~~ 424 (1156)
++++|+++.|+.. +.++++|+||++++|++++|+||||||||||+++|+|+++|++|+|.++|. ++
T Consensus 1 i~~~~l~~~~~~~-~~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i~ 79 (234)
T cd03251 1 VEFKNVTFRYPGD-GPPVLRDISLDIPAGETVALVGPSGSGKSTLVNLIPRFYDVDSGRILIDGHDVRDYTLASLRRQIG 79 (234)
T ss_pred CEEEEEEEEeCCC-CccceeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhccccCCCCEEEECCEEhhhCCHHHHHhhEE
Confidence 4689999999632 237999999999999999999999999999999999999999999999872 79
Q ss_pred EEecCCcCCCccHHHHhhcCCC-CCHHHHHHHHHHhCCchhhhhCCCCCccccccCCCCCCHHHHHHHHHHHhhccCCCe
Q 037346 425 YVAQSPWIQSGKIEENILFGKE-MDRERYERVLEACSLKKDLEVLPFGDQTIIGERGINLSGGQKQRIQIARPLYQDADI 503 (1156)
Q Consensus 425 ~v~Q~~~~~~~ti~eni~~~~~-~~~~~~~~~~~~~~l~~~~~~~~~g~~t~v~~~g~~LSgGqkqRi~lAral~~~~~i 503 (1156)
|++|++++++.|++||+.++.. .....+.+.++.+++.+.++.+|.|.++..+..+.+||||||||++|||||+.+|++
T Consensus 80 ~~~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~l 159 (234)
T cd03251 80 LVSQDVFLFNDTVAENIAYGRPGATREEVEEAARAANAHEFIMELPEGYDTVIGERGVKLSGGQRQRIAIARALLKDPPI 159 (234)
T ss_pred EeCCCCeeccccHHHHhhccCCCCCHHHHHHHHHHcCcHHHHHhcccCcceeeccCCCcCCHHHHHHHHHHHHHhcCCCE
Confidence 9999999999999999998753 345566677778888888999998999999999999999999999999999999999
Q ss_pred eeeeCCCCCcCHHHHHHHHHHHHh-cCCCEEEEEccCCCccccCCEEEEEeCCeEEEccChHHHHhcCc
Q 037346 504 FLLDDPFSPVDDHTGAHLFKFCWV-SSSKTVIYATHQVEFLPAADLILVIKDGKITQAGKYSDILNSGT 571 (1156)
Q Consensus 504 lllDep~s~lD~~~~~~i~~~~~~-~~~~tvi~vtH~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~~~ 571 (1156)
+||||||++||+.+++.+.+.+.. .+++|+|++||+++.+..||++++|++|++++.|+++++.....
T Consensus 160 llLDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~~d~v~~l~~G~i~~~~~~~~~~~~~~ 228 (234)
T cd03251 160 LILDEATSALDTESERLVQAALERLMKNRTTFVIAHRLSTIENADRIVVLEDGKIVERGTHEELLAQGG 228 (234)
T ss_pred EEEeCccccCCHHHHHHHHHHHHHhcCCCEEEEEecCHHHHhhCCEEEEecCCeEeeeCCHHHHHHcCc
Confidence 999999999999999988876644 35889999999999987899999999999999999988875443
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03244 ABCC_MRP_domain2 Domain 2 of the ABC subfamily C | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-39 Score=350.22 Aligned_cols=205 Identities=32% Similarity=0.420 Sum_probs=187.1
Q ss_pred cEEEeeeEEEeCCCCCCCccccceEEeeCCeEEEEEcCCCCChHHHHHHHhCCCCCCCcEEEEcCe-------------E
Q 037346 357 AIEIIDGSFSWDFSSPNPTLRNINLKVFHGMRVAVCGTVGSGKSSCLSCILGGVPKESGIIRLCGT-------------K 423 (1156)
Q Consensus 357 ~i~~~~~~f~~~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKSTll~~i~g~~~~~~G~i~~~g~-------------~ 423 (1156)
.++++|+++.|+.. ++++|+|+||+|++|++++|+||||||||||+++|+|+++|++|+|.++|. +
T Consensus 2 ~l~~~~l~~~~~~~-~~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i 80 (221)
T cd03244 2 DIEFKNVSLRYRPN-LPPVLKNISFSIKPGEKVGIVGRTGSGKSSLLLALFRLVELSSGSILIDGVDISKIGLHDLRSRI 80 (221)
T ss_pred cEEEEEEEEecCCC-CcccccceEEEECCCCEEEEECCCCCCHHHHHHHHHcCCCCCCCEEEECCEEhHhCCHHHHhhhE
Confidence 47899999999732 357999999999999999999999999999999999999999999999872 6
Q ss_pred EEEecCCcCCCccHHHHhhcCCCCCHHHHHHHHHHhCCchhhhhCCCCCccccccCCCCCCHHHHHHHHHHHhhccCCCe
Q 037346 424 AYVAQSPWIQSGKIEENILFGKEMDRERYERVLEACSLKKDLEVLPFGDQTIIGERGINLSGGQKQRIQIARPLYQDADI 503 (1156)
Q Consensus 424 ~~v~Q~~~~~~~ti~eni~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~t~v~~~g~~LSgGqkqRi~lAral~~~~~i 503 (1156)
+|++|+|.+++.|++||+.+......++..+.++.+++.+.+..+|.|+++..++.+.+||||||||++||||++.+|++
T Consensus 81 ~~~~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~l~~~~~~~~~~LS~G~~qr~~laral~~~p~l 160 (221)
T cd03244 81 SIIPQDPVLFSGTIRSNLDPFGEYSDEELWQALERVGLKEFVESLPGGLDTVVEEGGENLSVGQRQLLCLARALLRKSKI 160 (221)
T ss_pred EEECCCCccccchHHHHhCcCCCCCHHHHHHHHHHhCcHHHHHhcccccccccccCCCcCCHHHHHHHHHHHHHhcCCCE
Confidence 99999999999999999987666666777888899999999999999999999999999999999999999999999999
Q ss_pred eeeeCCCCCcCHHHHHHHHHHHHh-cCCCEEEEEccCCCccccCCEEEEEeCCeEEEccC
Q 037346 504 FLLDDPFSPVDDHTGAHLFKFCWV-SSSKTVIYATHQVEFLPAADLILVIKDGKITQAGK 562 (1156)
Q Consensus 504 lllDep~s~lD~~~~~~i~~~~~~-~~~~tvi~vtH~~~~~~~~d~i~~l~~G~i~~~g~ 562 (1156)
+||||||++||+.+++.+.+.+.. .+++|+|++||+++.+..||++++|++|++++.|+
T Consensus 161 lllDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~~d~i~~l~~g~~~~~~~ 220 (221)
T cd03244 161 LVLDEATASVDPETDALIQKTIREAFKDCTVLTIAHRLDTIIDSDRILVLDKGRVVEFDS 220 (221)
T ss_pred EEEeCccccCCHHHHHHHHHHHHHhcCCCEEEEEeCCHHHHhhCCEEEEEECCeEEecCC
Confidence 999999999999999988877654 34689999999999988899999999999998775
|
This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate. |
| >cd03288 ABCC_SUR2 The SUR domain 2 | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.1e-39 Score=355.94 Aligned_cols=214 Identities=28% Similarity=0.392 Sum_probs=192.9
Q ss_pred CccEEEeeeEEEeCCCCCCCccccceEEeeCCeEEEEEcCCCCChHHHHHHHhCCCCCCCcEEEEcCe------------
Q 037346 355 DTAIEIIDGSFSWDFSSPNPTLRNINLKVFHGMRVAVCGTVGSGKSSCLSCILGGVPKESGIIRLCGT------------ 422 (1156)
Q Consensus 355 ~~~i~~~~~~f~~~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKSTll~~i~g~~~~~~G~i~~~g~------------ 422 (1156)
.+.++++|++++|+.. ...+|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.++|.
T Consensus 17 ~~~i~~~~l~~~~~~~-~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~i~g~~i~~~~~~~~~~ 95 (257)
T cd03288 17 GGEIKIHDLCVRYENN-LKPVLKHVKAYIKPGQKVGICGRTGSGKSSLSLAFFRMVDIFDGKIVIDGIDISKLPLHTLRS 95 (257)
T ss_pred CceEEEEEEEEEeCCC-CCcceeEEEEEEcCCCEEEEECCCCCCHHHHHHHHHcccCCCCCeEEECCEEhhhCCHHHHhh
Confidence 4579999999999632 257999999999999999999999999999999999999999999999872
Q ss_pred -EEEEecCCcCCCccHHHHhhcCCCCCHHHHHHHHHHhCCchhhhhCCCCCccccccCCCCCCHHHHHHHHHHHhhccCC
Q 037346 423 -KAYVAQSPWIQSGKIEENILFGKEMDRERYERVLEACSLKKDLEVLPFGDQTIIGERGINLSGGQKQRIQIARPLYQDA 501 (1156)
Q Consensus 423 -~~~v~Q~~~~~~~ti~eni~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~t~v~~~g~~LSgGqkqRi~lAral~~~~ 501 (1156)
++|++|+|+++++|++||+........+++..+++..++.+.++.+|.|+++.+++.+.+||||||||++||||++++|
T Consensus 96 ~i~~v~q~~~l~~~tv~~nl~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p 175 (257)
T cd03288 96 RLSIILQDPILFSGSIRFNLDPECKCTDDRLWEALEIAQLKNMVKSLPGGLDAVVTEGGENFSVGQRQLFCLARAFVRKS 175 (257)
T ss_pred hEEEECCCCcccccHHHHhcCcCCCCCHHHHHHHHHHhCcHHHHhhcccccCcEeccCCCcCCHHHHHHHHHHHHHhcCC
Confidence 6999999999999999999765444456677788888998889999999999999999999999999999999999999
Q ss_pred CeeeeeCCCCCcCHHHHHHHHHHHHh-cCCCEEEEEccCCCccccCCEEEEEeCCeEEEccChHHHHhc
Q 037346 502 DIFLLDDPFSPVDDHTGAHLFKFCWV-SSSKTVIYATHQVEFLPAADLILVIKDGKITQAGKYSDILNS 569 (1156)
Q Consensus 502 ~illlDep~s~lD~~~~~~i~~~~~~-~~~~tvi~vtH~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~ 569 (1156)
+++||||||++||+.+++.+++.+.. .++.|+|++||+++.+..||+|++|++|++++.|+++++...
T Consensus 176 ~llllDEPt~gLD~~~~~~l~~~l~~~~~~~tiii~sh~~~~~~~~dri~~l~~G~i~~~g~~~~~~~~ 244 (257)
T cd03288 176 SILIMDEATASIDMATENILQKVVMTAFADRTVVTIAHRVSTILDADLVLVLSRGILVECDTPENLLAQ 244 (257)
T ss_pred CEEEEeCCccCCCHHHHHHHHHHHHHhcCCCEEEEEecChHHHHhCCEEEEEECCEEEEeCCHHHHHhc
Confidence 99999999999999999888776544 357999999999999888999999999999999999988764
|
The sulfonylurea receptor SUR is an ATP binding cassette (ABC) protein of the ABCC/MRP family. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity. |
| >TIGR02314 ABC_MetN D-methionine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-39 Score=370.13 Aligned_cols=201 Identities=25% Similarity=0.358 Sum_probs=173.6
Q ss_pred EEEeeeEEEeCCCC-CCCccccceEEeeCCeEEEEEcCCCCChHHHHHHHhCCCCCCCcEEEEcCe--------------
Q 037346 358 IEIIDGSFSWDFSS-PNPTLRNINLKVFHGMRVAVCGTVGSGKSSCLSCILGGVPKESGIIRLCGT-------------- 422 (1156)
Q Consensus 358 i~~~~~~f~~~~~~-~~~~l~~i~l~i~~g~~~~ivG~~GsGKSTll~~i~g~~~~~~G~i~~~g~-------------- 422 (1156)
|+++|++++|+..+ ..++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.
T Consensus 2 I~~~~lsk~y~~~~~~~~~L~~vsl~i~~Gei~gIiG~sGaGKSTLlr~I~gl~~p~~G~I~i~G~~i~~~~~~~l~~~r 81 (343)
T TIGR02314 2 IKLSNITKVFHQGTKTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTSGSVIVDGQDLTTLSNSELTKAR 81 (343)
T ss_pred EEEEEEEEEECCCCcceEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHHHHh
Confidence 78999999996322 247999999999999999999999999999999999999999999999873
Q ss_pred --EEEEecCCcCCC-ccHHHHhhcCCC---CC----HHHHHHHHHHhCCchhhhhCCCCCccccccCCCCCCHHHHHHHH
Q 037346 423 --KAYVAQSPWIQS-GKIEENILFGKE---MD----RERYERVLEACSLKKDLEVLPFGDQTIIGERGINLSGGQKQRIQ 492 (1156)
Q Consensus 423 --~~~v~Q~~~~~~-~ti~eni~~~~~---~~----~~~~~~~~~~~~l~~~~~~~~~g~~t~v~~~g~~LSgGqkqRi~ 492 (1156)
++|++|++.++. .|++||+.++.. .+ +++..++++..+|.+..+ ..+.+|||||||||+
T Consensus 82 ~~Ig~v~Q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~v~e~l~~vgL~~~~~-----------~~~~~LSgGqkQRV~ 150 (343)
T TIGR02314 82 RQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEIKRKVTELLALVGLGDKHD-----------SYPSNLSGGQKQRVA 150 (343)
T ss_pred cCEEEEECCccccccCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhh-----------CChhhCCHHHHHHHH
Confidence 799999999885 699999998532 22 234566777777765443 345689999999999
Q ss_pred HHHhhccCCCeeeeeCCCCCcCHHHHHHHHHHHHh---cCCCEEEEEccCCCccc-cCCEEEEEeCCeEEEccChHHHHh
Q 037346 493 IARPLYQDADIFLLDDPFSPVDDHTGAHLFKFCWV---SSSKTVIYATHQVEFLP-AADLILVIKDGKITQAGKYSDILN 568 (1156)
Q Consensus 493 lAral~~~~~illlDep~s~lD~~~~~~i~~~~~~---~~~~tvi~vtH~~~~~~-~~d~i~~l~~G~i~~~g~~~~l~~ 568 (1156)
|||||+.+|++||||||||+||+.+...+.+.+.. ..|.|+|+|||+++.+. .||+|++|++|++++.|+++++..
T Consensus 151 IARAL~~~P~iLLlDEPts~LD~~t~~~i~~lL~~l~~~~g~tiiliTH~~~~v~~~~d~v~vl~~G~iv~~g~~~~v~~ 230 (343)
T TIGR02314 151 IARALASNPKVLLCDEATSALDPATTQSILELLKEINRRLGLTILLITHEMDVVKRICDCVAVISNGELIEQGTVSEIFS 230 (343)
T ss_pred HHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHc
Confidence 99999999999999999999999999998876644 24899999999999986 499999999999999999999875
Q ss_pred c
Q 037346 569 S 569 (1156)
Q Consensus 569 ~ 569 (1156)
.
T Consensus 231 ~ 231 (343)
T TIGR02314 231 H 231 (343)
T ss_pred C
Confidence 4
|
Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria. |
| >PRK11650 ugpC glycerol-3-phosphate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-39 Score=370.02 Aligned_cols=201 Identities=26% Similarity=0.355 Sum_probs=175.2
Q ss_pred cEEEeeeEEEeCCCCCCCccccceEEeeCCeEEEEEcCCCCChHHHHHHHhCCCCCCCcEEEEcCe-----------EEE
Q 037346 357 AIEIIDGSFSWDFSSPNPTLRNINLKVFHGMRVAVCGTVGSGKSSCLSCILGGVPKESGIIRLCGT-----------KAY 425 (1156)
Q Consensus 357 ~i~~~~~~f~~~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKSTll~~i~g~~~~~~G~i~~~g~-----------~~~ 425 (1156)
.++++|+++.|+. +.++|+|+||++++||+++|+||||||||||+++|+|+.+|++|+|.++|. ++|
T Consensus 3 ~l~i~~l~~~~~~--~~~~l~~vsl~i~~Ge~~~llG~sGsGKSTLLr~iaGl~~p~~G~I~~~g~~i~~~~~~~r~ig~ 80 (356)
T PRK11650 3 GLKLQAVRKSYDG--KTQVIKGIDLDVADGEFIVLVGPSGCGKSTLLRMVAGLERITSGEIWIGGRVVNELEPADRDIAM 80 (356)
T ss_pred EEEEEeEEEEeCC--CCEEEeeeeEEEcCCCEEEEECCCCCcHHHHHHHHHCCCCCCceEEEECCEECCCCCHHHCCEEE
Confidence 4889999999941 357999999999999999999999999999999999999999999999983 799
Q ss_pred EecCCcCCC-ccHHHHhhcCCC---CC----HHHHHHHHHHhCCchhhhhCCCCCccccccCCCCCCHHHHHHHHHHHhh
Q 037346 426 VAQSPWIQS-GKIEENILFGKE---MD----RERYERVLEACSLKKDLEVLPFGDQTIIGERGINLSGGQKQRIQIARPL 497 (1156)
Q Consensus 426 v~Q~~~~~~-~ti~eni~~~~~---~~----~~~~~~~~~~~~l~~~~~~~~~g~~t~v~~~g~~LSgGqkqRi~lAral 497 (1156)
|+|++.+|. .||+|||.|+.. .+ .++.+++++.++|.+..+.. ..+|||||||||+|||||
T Consensus 81 v~Q~~~lfp~~tv~eNi~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~-----------~~~LSgGq~QRvalARAL 149 (356)
T PRK11650 81 VFQNYALYPHMSVRENMAYGLKIRGMPKAEIEERVAEAARILELEPLLDRK-----------PRELSGGQRQRVAMGRAI 149 (356)
T ss_pred EeCCccccCCCCHHHHHHhHHhhcCCCHHHHHHHHHHHHHHcCChhHhhCC-----------hhhCCHHHHHHHHHHHHH
Confidence 999999885 599999998743 12 24566778888887655443 468999999999999999
Q ss_pred ccCCCeeeeeCCCCCcCHHHHHHHHHHHHh---cCCCEEEEEccCCCccc-cCCEEEEEeCCeEEEccChHHHHhcC
Q 037346 498 YQDADIFLLDDPFSPVDDHTGAHLFKFCWV---SSSKTVIYATHQVEFLP-AADLILVIKDGKITQAGKYSDILNSG 570 (1156)
Q Consensus 498 ~~~~~illlDep~s~lD~~~~~~i~~~~~~---~~~~tvi~vtH~~~~~~-~~d~i~~l~~G~i~~~g~~~~l~~~~ 570 (1156)
+.+|++||||||||+||+.+++.+.+.+.. ..|.|+|+|||+++.+. .||+|++|++|++++.|+++++.+..
T Consensus 150 ~~~P~llLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~~ea~~l~D~i~vl~~G~i~~~g~~~~~~~~p 226 (356)
T PRK11650 150 VREPAVFLFDEPLSNLDAKLRVQMRLEIQRLHRRLKTTSLYVTHDQVEAMTLADRVVVMNGGVAEQIGTPVEVYEKP 226 (356)
T ss_pred hcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeCCEEEEECCHHHHHhCC
Confidence 999999999999999999999988876643 34899999999998765 69999999999999999999987653
|
|
| >cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-38 Score=345.52 Aligned_cols=204 Identities=37% Similarity=0.511 Sum_probs=182.7
Q ss_pred cEEEeeeEEEeCCCCCCCccccceEEeeCCeEEEEEcCCCCChHHHHHHHhCCCCCCCcEEEEcCe-------------E
Q 037346 357 AIEIIDGSFSWDFSSPNPTLRNINLKVFHGMRVAVCGTVGSGKSSCLSCILGGVPKESGIIRLCGT-------------K 423 (1156)
Q Consensus 357 ~i~~~~~~f~~~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKSTll~~i~g~~~~~~G~i~~~g~-------------~ 423 (1156)
.++++|+++.|+.. ++++|+|+||+|++|++++|+||||||||||+++|+|+.+|++|+|.++|. +
T Consensus 2 ~l~~~~l~~~~~~~-~~~~l~~i~~~i~~G~~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i 80 (220)
T cd03245 2 RIEFRNVSFSYPNQ-EIPALDNVSLTIRAGEKVAIIGRVGSGKSTLLKLLAGLYKPTSGSVLLDGTDIRQLDPADLRRNI 80 (220)
T ss_pred eEEEEEEEEEcCCC-CcccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCeEEECCEEhHHCCHHHHHhhE
Confidence 47899999999632 257999999999999999999999999999999999999999999999883 6
Q ss_pred EEEecCCcCCCccHHHHhhcCCC-CCHHHHHHHHHHhCCchhhhhCCCCCccccccCCCCCCHHHHHHHHHHHhhccCCC
Q 037346 424 AYVAQSPWIQSGKIEENILFGKE-MDRERYERVLEACSLKKDLEVLPFGDQTIIGERGINLSGGQKQRIQIARPLYQDAD 502 (1156)
Q Consensus 424 ~~v~Q~~~~~~~ti~eni~~~~~-~~~~~~~~~~~~~~l~~~~~~~~~g~~t~v~~~g~~LSgGqkqRi~lAral~~~~~ 502 (1156)
+|++|+++++..|++||+.++.. ...++..+.++.+++.+.++..|.|.+|.+.+...+||||||||++||||++.+|+
T Consensus 81 ~~~~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~LSgG~~qrl~la~al~~~p~ 160 (220)
T cd03245 81 GYVPQDVTLFYGTLRDNITLGAPLADDERILRAAELAGVTDFVNKHPNGLDLQIGERGRGLSGGQRQAVALARALLNDPP 160 (220)
T ss_pred EEeCCCCccccchHHHHhhcCCCCCCHHHHHHHHHHcCcHHHHHhccccccceecCCCccCCHHHHHHHHHHHHHhcCCC
Confidence 99999999888899999988643 34556778888899998889999999999999999999999999999999999999
Q ss_pred eeeeeCCCCCcCHHHHHHHHHHHHh-cCCCEEEEEccCCCccccCCEEEEEeCCeEEEcc
Q 037346 503 IFLLDDPFSPVDDHTGAHLFKFCWV-SSSKTVIYATHQVEFLPAADLILVIKDGKITQAG 561 (1156)
Q Consensus 503 illlDep~s~lD~~~~~~i~~~~~~-~~~~tvi~vtH~~~~~~~~d~i~~l~~G~i~~~g 561 (1156)
++||||||++||+.++..+.+.+.. .+++|+|++||+++.+..||++++|++|++++.|
T Consensus 161 llllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~~sH~~~~~~~~d~v~~l~~g~i~~~~ 220 (220)
T cd03245 161 ILLLDEPTSAMDMNSEERLKERLRQLLGDKTLIIITHRPSLLDLVDRIIVMDSGRIVADG 220 (220)
T ss_pred EEEEeCccccCCHHHHHHHHHHHHHhcCCCEEEEEeCCHHHHHhCCEEEEEeCCeEeecC
Confidence 9999999999999999998887654 2348999999999988779999999999998654
|
Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane. |
| >PRK11432 fbpC ferric transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.1e-39 Score=367.05 Aligned_cols=201 Identities=25% Similarity=0.361 Sum_probs=174.4
Q ss_pred ccEEEeeeEEEeCCCCCCCccccceEEeeCCeEEEEEcCCCCChHHHHHHHhCCCCCCCcEEEEcCe-----------EE
Q 037346 356 TAIEIIDGSFSWDFSSPNPTLRNINLKVFHGMRVAVCGTVGSGKSSCLSCILGGVPKESGIIRLCGT-----------KA 424 (1156)
Q Consensus 356 ~~i~~~~~~f~~~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKSTll~~i~g~~~~~~G~i~~~g~-----------~~ 424 (1156)
..|+++|+++.|+ +..+|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|. ++
T Consensus 5 ~~l~~~~l~~~~~---~~~~l~~isl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~~~g~~i~~~~~~~r~ig 81 (351)
T PRK11432 5 NFVVLKNITKRFG---SNTVIDNLNLTIKQGTMVTLLGPSGCGKTTVLRLVAGLEKPTEGQIFIDGEDVTHRSIQQRDIC 81 (351)
T ss_pred cEEEEEeEEEEEC---CeEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHHCCCCCCceEEEECCEECCCCCHHHCCEE
Confidence 3699999999996 356899999999999999999999999999999999999999999999983 69
Q ss_pred EEecCCcCCC-ccHHHHhhcCCC---CC----HHHHHHHHHHhCCchhhhhCCCCCccccccCCCCCCHHHHHHHHHHHh
Q 037346 425 YVAQSPWIQS-GKIEENILFGKE---MD----RERYERVLEACSLKKDLEVLPFGDQTIIGERGINLSGGQKQRIQIARP 496 (1156)
Q Consensus 425 ~v~Q~~~~~~-~ti~eni~~~~~---~~----~~~~~~~~~~~~l~~~~~~~~~g~~t~v~~~g~~LSgGqkqRi~lAra 496 (1156)
||+|++.+|. .||+|||.|+.. .+ .++.+++++..++....+ +...+|||||||||+||||
T Consensus 82 ~vfQ~~~lfp~~tv~eNi~~~l~~~~~~~~~~~~~v~~~l~~~gl~~~~~-----------r~~~~LSgGq~QRVaLARa 150 (351)
T PRK11432 82 MVFQSYALFPHMSLGENVGYGLKMLGVPKEERKQRVKEALELVDLAGFED-----------RYVDQISGGQQQRVALARA 150 (351)
T ss_pred EEeCCcccCCCCCHHHHHHHHHhHcCCCHHHHHHHHHHHHHHcCCchhhc-----------CChhhCCHHHHHHHHHHHH
Confidence 9999999986 599999999743 12 245566777777765443 3457899999999999999
Q ss_pred hccCCCeeeeeCCCCCcCHHHHHHHHHHHHh---cCCCEEEEEccCCCcc-ccCCEEEEEeCCeEEEccChHHHHhcC
Q 037346 497 LYQDADIFLLDDPFSPVDDHTGAHLFKFCWV---SSSKTVIYATHQVEFL-PAADLILVIKDGKITQAGKYSDILNSG 570 (1156)
Q Consensus 497 l~~~~~illlDep~s~lD~~~~~~i~~~~~~---~~~~tvi~vtH~~~~~-~~~d~i~~l~~G~i~~~g~~~~l~~~~ 570 (1156)
|+.+|+++|||||||+||+.+++++.+.+.. ..|.|+|+|||+++.+ ..||+|++|++|++++.|+++++....
T Consensus 151 L~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~~e~~~laD~i~vm~~G~i~~~g~~~~~~~~p 228 (351)
T PRK11432 151 LILKPKVLLFDEPLSNLDANLRRSMREKIRELQQQFNITSLYVTHDQSEAFAVSDTVIVMNKGKIMQIGSPQELYRQP 228 (351)
T ss_pred HHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhCC
Confidence 9999999999999999999999998776543 3489999999999887 469999999999999999999987643
|
|
| >cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.9e-39 Score=351.32 Aligned_cols=198 Identities=30% Similarity=0.384 Sum_probs=168.8
Q ss_pred EEEeeeEEEeCCCCCCCccccceEEeeCCeEEEEEcCCCCChHHHHHHHhCCCCCCCcEEEEcCe---------------
Q 037346 358 IEIIDGSFSWDFSSPNPTLRNINLKVFHGMRVAVCGTVGSGKSSCLSCILGGVPKESGIIRLCGT--------------- 422 (1156)
Q Consensus 358 i~~~~~~f~~~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKSTll~~i~g~~~~~~G~i~~~g~--------------- 422 (1156)
++++|+++.|+ +.++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.
T Consensus 1 l~~~~l~~~~~---~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~~ 77 (235)
T cd03261 1 IELRGLTKSFG---GRTVLKGVDLDVRRGEILAIIGPSGSGKSTLLRLIVGLLRPDSGEVLIDGEDISGLSEAELYRLRR 77 (235)
T ss_pred CeEEEEEEEEC---CEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccChhhHHHHhc
Confidence 46899999996 357999999999999999999999999999999999999999999999872
Q ss_pred -EEEEecCCcCCCc-cHHHHhhcCCC----CC----HHHHHHHHHHhCCchhhhhCCCCCccccccCCCCCCHHHHHHHH
Q 037346 423 -KAYVAQSPWIQSG-KIEENILFGKE----MD----RERYERVLEACSLKKDLEVLPFGDQTIIGERGINLSGGQKQRIQ 492 (1156)
Q Consensus 423 -~~~v~Q~~~~~~~-ti~eni~~~~~----~~----~~~~~~~~~~~~l~~~~~~~~~g~~t~v~~~g~~LSgGqkqRi~ 492 (1156)
++|++|++.++.. |++||+.++.. .+ .++..++++.+++.+... ....+||||||||++
T Consensus 78 ~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-----------~~~~~LSgG~~qrv~ 146 (235)
T cd03261 78 RMGMLFQSGALFDSLTVFENVAFPLREHTRLSEEEIREIVLEKLEAVGLRGAED-----------LYPAELSGGMKKRVA 146 (235)
T ss_pred ceEEEccCcccCCCCcHHHHHHHHHhhccCCCHHHHHHHHHHHHHHcCCchhhc-----------CChhhCCHHHHHHHH
Confidence 6899999988775 99999987521 22 234455677777654332 344689999999999
Q ss_pred HHHhhccCCCeeeeeCCCCCcCHHHHHHHHHHHHh--c-CCCEEEEEccCCCccc-cCCEEEEEeCCeEEEccChHHHHh
Q 037346 493 IARPLYQDADIFLLDDPFSPVDDHTGAHLFKFCWV--S-SSKTVIYATHQVEFLP-AADLILVIKDGKITQAGKYSDILN 568 (1156)
Q Consensus 493 lAral~~~~~illlDep~s~lD~~~~~~i~~~~~~--~-~~~tvi~vtH~~~~~~-~~d~i~~l~~G~i~~~g~~~~l~~ 568 (1156)
|||||+.+|+++||||||++||+.+++.+.+.+.. . .|+|+|++||+++.+. .||+|++|++|++++.|+++++..
T Consensus 147 ia~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~vsH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~ 226 (235)
T cd03261 147 LARALALDPELLLYDEPTAGLDPIASGVIDDLIRSLKKELGLTSIMVTHDLDTAFAIADRIAVLYDGKIVAEGTPEELRA 226 (235)
T ss_pred HHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEecCHHHHHHhcCEEEEEECCeEEEecCHHHHcC
Confidence 99999999999999999999999999998876644 2 4889999999999876 599999999999999999888764
Q ss_pred c
Q 037346 569 S 569 (1156)
Q Consensus 569 ~ 569 (1156)
.
T Consensus 227 ~ 227 (235)
T cd03261 227 S 227 (235)
T ss_pred C
Confidence 3
|
The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK13631 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-38 Score=361.05 Aligned_cols=204 Identities=25% Similarity=0.373 Sum_probs=172.7
Q ss_pred ccEEEeeeEEEeCCCC--CCCccccceEEeeCCeEEEEEcCCCCChHHHHHHHhCCCCCCCcEEEEcC------------
Q 037346 356 TAIEIIDGSFSWDFSS--PNPTLRNINLKVFHGMRVAVCGTVGSGKSSCLSCILGGVPKESGIIRLCG------------ 421 (1156)
Q Consensus 356 ~~i~~~~~~f~~~~~~--~~~~l~~i~l~i~~g~~~~ivG~~GsGKSTll~~i~g~~~~~~G~i~~~g------------ 421 (1156)
..|+++|++|.|+... +.++|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.++|
T Consensus 20 ~~l~~~nl~~~y~~~~~~~~~~L~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~L~Gl~~p~~G~I~i~g~~~~~~~~~~~~ 99 (320)
T PRK13631 20 IILRVKNLYCVFDEKQENELVALNNISYTFEKNKIYFIIGNSGSGKSTLVTHFNGLIKSKYGTIQVGDIYIGDKKNNHEL 99 (320)
T ss_pred ceEEEEeEEEEeCCCCcccccceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEECCEEcccccccccc
Confidence 4699999999997321 24699999999999999999999999999999999999999999999975
Q ss_pred -----------------eEEEEecCC--cCCCccHHHHhhcCCC---CCH----HHHHHHHHHhCCchhhhhCCCCCccc
Q 037346 422 -----------------TKAYVAQSP--WIQSGKIEENILFGKE---MDR----ERYERVLEACSLKKDLEVLPFGDQTI 475 (1156)
Q Consensus 422 -----------------~~~~v~Q~~--~~~~~ti~eni~~~~~---~~~----~~~~~~~~~~~l~~~~~~~~~g~~t~ 475 (1156)
.++||+|+| .+++.|++|||.|+.. .+. ++..+.++.+++.. ..
T Consensus 100 ~~~~~~~~~~~~~~~~~~ig~v~Q~~~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~----------~~ 169 (320)
T PRK13631 100 ITNPYSKKIKNFKELRRRVSMVFQFPEYQLFKDTIEKDIMFGPVALGVKKSEAKKLAKFYLNKMGLDD----------SY 169 (320)
T ss_pred cccccccccchHHHHHhcEEEEEECchhccccchHHHHHHhhHHhcCCCHHHHHHHHHHHHHHcCCCh----------hH
Confidence 158999998 6888899999998742 222 23444555555532 12
Q ss_pred cccCCCCCCHHHHHHHHHHHhhccCCCeeeeeCCCCCcCHHHHHHHHHHHHh--cCCCEEEEEccCCCccc-cCCEEEEE
Q 037346 476 IGERGINLSGGQKQRIQIARPLYQDADIFLLDDPFSPVDDHTGAHLFKFCWV--SSSKTVIYATHQVEFLP-AADLILVI 552 (1156)
Q Consensus 476 v~~~g~~LSgGqkqRi~lAral~~~~~illlDep~s~lD~~~~~~i~~~~~~--~~~~tvi~vtH~~~~~~-~~d~i~~l 552 (1156)
.++.+.+||||||||++|||||+.+|+++||||||++||+.+++.+.+.+.. .+|+|+|+|||+++.+. .||+|++|
T Consensus 170 ~~~~~~~LSgGqkqRvaiAraL~~~p~iLLLDEPtsgLD~~~~~~l~~~L~~l~~~g~TiiivtHd~~~~~~~adri~vl 249 (320)
T PRK13631 170 LERSPFGLSGGQKRRVAIAGILAIQPEILIFDEPTAGLDPKGEHEMMQLILDAKANNKTVFVITHTMEHVLEVADEVIVM 249 (320)
T ss_pred hcCCcccCCHHHHHHHHHHHHHHcCCCEEEEECCccCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEEEE
Confidence 3566789999999999999999999999999999999999999998876643 45899999999999874 69999999
Q ss_pred eCCeEEEccChHHHHhc
Q 037346 553 KDGKITQAGKYSDILNS 569 (1156)
Q Consensus 553 ~~G~i~~~g~~~~l~~~ 569 (1156)
++|++++.|+++++...
T Consensus 250 ~~G~i~~~g~~~~~~~~ 266 (320)
T PRK13631 250 DKGKILKTGTPYEIFTD 266 (320)
T ss_pred ECCEEEEeCCHHHHhcC
Confidence 99999999999988753
|
|
| >PRK09452 potA putrescine/spermidine ABC transporter ATPase protein; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-38 Score=366.00 Aligned_cols=201 Identities=29% Similarity=0.389 Sum_probs=175.4
Q ss_pred ccEEEeeeEEEeCCCCCCCccccceEEeeCCeEEEEEcCCCCChHHHHHHHhCCCCCCCcEEEEcCe-----------EE
Q 037346 356 TAIEIIDGSFSWDFSSPNPTLRNINLKVFHGMRVAVCGTVGSGKSSCLSCILGGVPKESGIIRLCGT-----------KA 424 (1156)
Q Consensus 356 ~~i~~~~~~f~~~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKSTll~~i~g~~~~~~G~i~~~g~-----------~~ 424 (1156)
..++++|+++.|+ +.++|+|+||++++||+++|+|||||||||||++|+|+++|++|+|.++|. ++
T Consensus 13 ~~L~l~~l~~~~~---~~~~l~~vsl~i~~Ge~~~LlGpsGsGKSTLLr~IaGl~~p~~G~I~~~g~~i~~~~~~~r~ig 89 (375)
T PRK09452 13 PLVELRGISKSFD---GKEVISNLDLTINNGEFLTLLGPSGCGKTTVLRLIAGFETPDSGRIMLDGQDITHVPAENRHVN 89 (375)
T ss_pred ceEEEEEEEEEEC---CeEEEeeeEEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCCCCHHHCCEE
Confidence 4599999999996 356899999999999999999999999999999999999999999999984 79
Q ss_pred EEecCCcCCCc-cHHHHhhcCCCC---C----HHHHHHHHHHhCCchhhhhCCCCCccccccCCCCCCHHHHHHHHHHHh
Q 037346 425 YVAQSPWIQSG-KIEENILFGKEM---D----RERYERVLEACSLKKDLEVLPFGDQTIIGERGINLSGGQKQRIQIARP 496 (1156)
Q Consensus 425 ~v~Q~~~~~~~-ti~eni~~~~~~---~----~~~~~~~~~~~~l~~~~~~~~~g~~t~v~~~g~~LSgGqkqRi~lAra 496 (1156)
||+|++.+|.. ||+|||.|+... . .++.+++++.+++.+.++..| .+|||||||||+||||
T Consensus 90 ~vfQ~~~lfp~ltv~eNi~~~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~p-----------~~LSgGq~QRVaLARa 158 (375)
T PRK09452 90 TVFQSYALFPHMTVFENVAFGLRMQKTPAAEITPRVMEALRMVQLEEFAQRKP-----------HQLSGGQQQRVAIARA 158 (375)
T ss_pred EEecCcccCCCCCHHHHHHHHHhhcCCCHHHHHHHHHHHHHHcCCchhhhCCh-----------hhCCHHHHHHHHHHHH
Confidence 99999998855 999999987431 2 235566777778876555444 6899999999999999
Q ss_pred hccCCCeeeeeCCCCCcCHHHHHHHHHHHHh---cCCCEEEEEccCCCccc-cCCEEEEEeCCeEEEccChHHHHhcC
Q 037346 497 LYQDADIFLLDDPFSPVDDHTGAHLFKFCWV---SSSKTVIYATHQVEFLP-AADLILVIKDGKITQAGKYSDILNSG 570 (1156)
Q Consensus 497 l~~~~~illlDep~s~lD~~~~~~i~~~~~~---~~~~tvi~vtH~~~~~~-~~d~i~~l~~G~i~~~g~~~~l~~~~ 570 (1156)
|+.+|+++|||||||+||+..++.+.+.+.. ..|.|+|+|||+.+.+. .||+|++|++|++++.|+++++....
T Consensus 159 L~~~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~~~g~tiI~vTHd~~ea~~laDri~vl~~G~i~~~g~~~~i~~~p 236 (375)
T PRK09452 159 VVNKPKVLLLDESLSALDYKLRKQMQNELKALQRKLGITFVFVTHDQEEALTMSDRIVVMRDGRIEQDGTPREIYEEP 236 (375)
T ss_pred HhcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhCc
Confidence 9999999999999999999999988776643 34899999999998864 69999999999999999999987653
|
|
| >TIGR03265 PhnT2 putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-38 Score=365.68 Aligned_cols=200 Identities=30% Similarity=0.370 Sum_probs=175.2
Q ss_pred cEEEeeeEEEeCCCCCCCccccceEEeeCCeEEEEEcCCCCChHHHHHHHhCCCCCCCcEEEEcCe-----------EEE
Q 037346 357 AIEIIDGSFSWDFSSPNPTLRNINLKVFHGMRVAVCGTVGSGKSSCLSCILGGVPKESGIIRLCGT-----------KAY 425 (1156)
Q Consensus 357 ~i~~~~~~f~~~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKSTll~~i~g~~~~~~G~i~~~g~-----------~~~ 425 (1156)
.++++|++++|+ +..+|+|+||++++||+++|+||||||||||+++|+|+.+|++|+|.++|+ ++|
T Consensus 4 ~l~~~~l~~~~~---~~~~l~~vs~~i~~Ge~~~l~GpsGsGKSTLLr~iaGl~~p~~G~I~i~g~~~~~~~~~~r~ig~ 80 (353)
T TIGR03265 4 YLSIDNIRKRFG---AFTALKDISLSVKKGEFVCLLGPSGCGKTTLLRIIAGLERQTAGTIYQGGRDITRLPPQKRDYGI 80 (353)
T ss_pred EEEEEEEEEEeC---CeEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHCCCCCCceEEEECCEECCCCCHHHCCEEE
Confidence 589999999996 356899999999999999999999999999999999999999999999983 799
Q ss_pred EecCCcCCC-ccHHHHhhcCCC---CC----HHHHHHHHHHhCCchhhhhCCCCCccccccCCCCCCHHHHHHHHHHHhh
Q 037346 426 VAQSPWIQS-GKIEENILFGKE---MD----RERYERVLEACSLKKDLEVLPFGDQTIIGERGINLSGGQKQRIQIARPL 497 (1156)
Q Consensus 426 v~Q~~~~~~-~ti~eni~~~~~---~~----~~~~~~~~~~~~l~~~~~~~~~g~~t~v~~~g~~LSgGqkqRi~lAral 497 (1156)
|+|++.+|. .||+|||.|+.. .+ .++.+++++.++|.+..+ +.+.+|||||||||+|||||
T Consensus 81 v~Q~~~lfp~~tv~eNi~~~~~~~~~~~~~~~~~~~~~l~~l~L~~~~~-----------~~~~~LSgGq~QRvaLARaL 149 (353)
T TIGR03265 81 VFQSYALFPNLTVADNIAYGLKNRGMGRAEVAERVAELLDLVGLPGSER-----------KYPGQLSGGQQQRVALARAL 149 (353)
T ss_pred EeCCcccCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCchhh-----------CChhhCCHHHHHHHHHHHHH
Confidence 999999886 699999998742 22 345667777777765544 44578999999999999999
Q ss_pred ccCCCeeeeeCCCCCcCHHHHHHHHHHHHh---cCCCEEEEEccCCCccc-cCCEEEEEeCCeEEEccChHHHHhcC
Q 037346 498 YQDADIFLLDDPFSPVDDHTGAHLFKFCWV---SSSKTVIYATHQVEFLP-AADLILVIKDGKITQAGKYSDILNSG 570 (1156)
Q Consensus 498 ~~~~~illlDep~s~lD~~~~~~i~~~~~~---~~~~tvi~vtH~~~~~~-~~d~i~~l~~G~i~~~g~~~~l~~~~ 570 (1156)
+.+|+++|||||||+||+.++.++.+.+.. ..|.|+|+|||+++.+. .||+|++|++|++++.|+++++.+..
T Consensus 150 ~~~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~~~~~tvi~vTHd~~ea~~l~d~i~vl~~G~i~~~g~~~~~~~~p 226 (353)
T TIGR03265 150 ATSPGLLLLDEPLSALDARVREHLRTEIRQLQRRLGVTTIMVTHDQEEALSMADRIVVMNHGVIEQVGTPQEIYRHP 226 (353)
T ss_pred hcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhCC
Confidence 999999999999999999999998776643 34889999999999865 69999999999999999999998653
|
This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely. |
| >PRK10851 sulfate/thiosulfate transporter subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-38 Score=362.20 Aligned_cols=199 Identities=32% Similarity=0.452 Sum_probs=172.8
Q ss_pred cEEEeeeEEEeCCCCCCCccccceEEeeCCeEEEEEcCCCCChHHHHHHHhCCCCCCCcEEEEcCe-----------EEE
Q 037346 357 AIEIIDGSFSWDFSSPNPTLRNINLKVFHGMRVAVCGTVGSGKSSCLSCILGGVPKESGIIRLCGT-----------KAY 425 (1156)
Q Consensus 357 ~i~~~~~~f~~~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKSTll~~i~g~~~~~~G~i~~~g~-----------~~~ 425 (1156)
.++++|+++.|+ +.++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+ ++|
T Consensus 2 ~L~i~~l~~~~~---~~~~l~~isl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~i~g~~i~~~~~~~r~i~~ 78 (353)
T PRK10851 2 SIEIANIKKSFG---RTQVLNDISLDIPSGQMVALLGPSGSGKTTLLRIIAGLEHQTSGHIRFHGTDVSRLHARDRKVGF 78 (353)
T ss_pred EEEEEEEEEEeC---CeEEEEEeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHCCEEE
Confidence 378999999996 356999999999999999999999999999999999999999999999883 799
Q ss_pred EecCCcCCC-ccHHHHhhcCCC-------CC----HHHHHHHHHHhCCchhhhhCCCCCccccccCCCCCCHHHHHHHHH
Q 037346 426 VAQSPWIQS-GKIEENILFGKE-------MD----RERYERVLEACSLKKDLEVLPFGDQTIIGERGINLSGGQKQRIQI 493 (1156)
Q Consensus 426 v~Q~~~~~~-~ti~eni~~~~~-------~~----~~~~~~~~~~~~l~~~~~~~~~g~~t~v~~~g~~LSgGqkqRi~l 493 (1156)
|+|++.+|. .|++||+.|+.. .+ +++..++++.++|.+..+ +...+|||||||||+|
T Consensus 79 v~Q~~~l~p~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~-----------~~~~~LSgGq~QRval 147 (353)
T PRK10851 79 VFQHYALFRHMTVFDNIAFGLTVLPRRERPNAAAIKAKVTQLLEMVQLAHLAD-----------RYPAQLSGGQKQRVAL 147 (353)
T ss_pred EecCcccCCCCcHHHHHHhhhhhcccccCCCHHHHHHHHHHHHHHcCCchhhh-----------CChhhCCHHHHHHHHH
Confidence 999999886 599999998742 12 235566777777765443 3456899999999999
Q ss_pred HHhhccCCCeeeeeCCCCCcCHHHHHHHHHHHHh---cCCCEEEEEccCCCccc-cCCEEEEEeCCeEEEccChHHHHhc
Q 037346 494 ARPLYQDADIFLLDDPFSPVDDHTGAHLFKFCWV---SSSKTVIYATHQVEFLP-AADLILVIKDGKITQAGKYSDILNS 569 (1156)
Q Consensus 494 Aral~~~~~illlDep~s~lD~~~~~~i~~~~~~---~~~~tvi~vtH~~~~~~-~~d~i~~l~~G~i~~~g~~~~l~~~ 569 (1156)
||||+.+|+++||||||++||+.+++.+.+.+.. ..|.|+|+|||+++.+. .||+|++|++|++++.|+++++...
T Consensus 148 ArAL~~~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~~~g~tii~vTHd~~ea~~~~Dri~vl~~G~i~~~g~~~~i~~~ 227 (353)
T PRK10851 148 ARALAVEPQILLLDEPFGALDAQVRKELRRWLRQLHEELKFTSVFVTHDQEEAMEVADRVVVMSQGNIEQAGTPDQVWRE 227 (353)
T ss_pred HHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhC
Confidence 9999999999999999999999999988776543 33789999999999875 5999999999999999999998764
|
|
| >PRK13637 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-38 Score=354.81 Aligned_cols=203 Identities=27% Similarity=0.401 Sum_probs=171.9
Q ss_pred cEEEeeeEEEeCCCC--CCCccccceEEeeCCeEEEEEcCCCCChHHHHHHHhCCCCCCCcEEEEcC-------------
Q 037346 357 AIEIIDGSFSWDFSS--PNPTLRNINLKVFHGMRVAVCGTVGSGKSSCLSCILGGVPKESGIIRLCG------------- 421 (1156)
Q Consensus 357 ~i~~~~~~f~~~~~~--~~~~l~~i~l~i~~g~~~~ivG~~GsGKSTll~~i~g~~~~~~G~i~~~g------------- 421 (1156)
.++++|+++.|+... .+++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|
T Consensus 2 ~l~~~~l~~~y~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~ 81 (287)
T PRK13637 2 SIKIENLTHIYMEGTPFEKKALDNVNIEIEDGEFVGLIGHTGSGKSTLIQHLNGLLKPTSGKIIIDGVDITDKKVKLSDI 81 (287)
T ss_pred EEEEEEEEEECCCCCccccceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEECCEECCCcCccHHHH
Confidence 378999999996322 24799999999999999999999999999999999999999999999987
Q ss_pred --eEEEEecCC--cCCCccHHHHhhcCCC---CCH----HHHHHHHHHhCCchhhhhCCCCCccccccCCCCCCHHHHHH
Q 037346 422 --TKAYVAQSP--WIQSGKIEENILFGKE---MDR----ERYERVLEACSLKKDLEVLPFGDQTIIGERGINLSGGQKQR 490 (1156)
Q Consensus 422 --~~~~v~Q~~--~~~~~ti~eni~~~~~---~~~----~~~~~~~~~~~l~~~~~~~~~g~~t~v~~~g~~LSgGqkqR 490 (1156)
+++|+||+| .+++.|++|||.|+.. .+. ++.+++++.++|.. .+...+.+.+||||||||
T Consensus 82 ~~~ig~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~---------~~~~~~~~~~LSgGq~qr 152 (287)
T PRK13637 82 RKKVGLVFQYPEYQLFEETIEKDIAFGPINLGLSEEEIENRVKRAMNIVGLDY---------EDYKDKSPFELSGGQKRR 152 (287)
T ss_pred hhceEEEecCchhccccccHHHHHHhHHHHCCCCHHHHHHHHHHHHHHcCCCc---------hhhccCCcccCCHHHHHH
Confidence 268999998 5678899999998632 222 34566777777751 112345567999999999
Q ss_pred HHHHHhhccCCCeeeeeCCCCCcCHHHHHHHHHHHHh--c-CCCEEEEEccCCCccc-cCCEEEEEeCCeEEEccChHHH
Q 037346 491 IQIARPLYQDADIFLLDDPFSPVDDHTGAHLFKFCWV--S-SSKTVIYATHQVEFLP-AADLILVIKDGKITQAGKYSDI 566 (1156)
Q Consensus 491 i~lAral~~~~~illlDep~s~lD~~~~~~i~~~~~~--~-~~~tvi~vtH~~~~~~-~~d~i~~l~~G~i~~~g~~~~l 566 (1156)
++|||||+.+|+++||||||++||+.++.++.+.+.. . .|+|+|++||+++.+. .||+|++|++|++++.|+++++
T Consensus 153 v~iAraL~~~P~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvi~vtHd~~~~~~~~drv~~l~~G~i~~~g~~~~~ 232 (287)
T PRK13637 153 VAIAGVVAMEPKILILDEPTAGLDPKGRDEILNKIKELHKEYNMTIILVSHSMEDVAKLADRIIVMNKGKCELQGTPREV 232 (287)
T ss_pred HHHHHHHHcCCCEEEEECCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHH
Confidence 9999999999999999999999999999998876643 2 4899999999999875 6999999999999999999887
Q ss_pred Hh
Q 037346 567 LN 568 (1156)
Q Consensus 567 ~~ 568 (1156)
.+
T Consensus 233 ~~ 234 (287)
T PRK13637 233 FK 234 (287)
T ss_pred Hh
Confidence 64
|
|
| >TIGR03258 PhnT 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-38 Score=363.83 Aligned_cols=201 Identities=28% Similarity=0.395 Sum_probs=175.0
Q ss_pred ccEEEeeeEEEeCCCCCCCccccceEEeeCCeEEEEEcCCCCChHHHHHHHhCCCCCCC--cEEEEcCe-----------
Q 037346 356 TAIEIIDGSFSWDFSSPNPTLRNINLKVFHGMRVAVCGTVGSGKSSCLSCILGGVPKES--GIIRLCGT----------- 422 (1156)
Q Consensus 356 ~~i~~~~~~f~~~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKSTll~~i~g~~~~~~--G~i~~~g~----------- 422 (1156)
+.++++|++++|+ +..+|+|+||+|++||+++|+||||||||||+++|+|+++|++ |+|.++|.
T Consensus 4 ~~l~~~~l~~~~~---~~~~l~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~~~~G~i~~~g~~~~~~~~~~r~ 80 (362)
T TIGR03258 4 GGIRIDHLRVAYG---ANTVLDDLSLEIEAGELLALIGKSGCGKTTLLRAIAGFVKAAGLTGRIAIADRDLTHAPPHKRG 80 (362)
T ss_pred eEEEEEEEEEEEC---CeEEEeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCEEEEECCEECCCCCHHHCC
Confidence 3589999999996 3469999999999999999999999999999999999999999 99999883
Q ss_pred EEEEecCCcCCCc-cHHHHhhcCCC---CC----HHHHHHHHHHhCCchhhhhCCCCCccccccCCCCCCHHHHHHHHHH
Q 037346 423 KAYVAQSPWIQSG-KIEENILFGKE---MD----RERYERVLEACSLKKDLEVLPFGDQTIIGERGINLSGGQKQRIQIA 494 (1156)
Q Consensus 423 ~~~v~Q~~~~~~~-ti~eni~~~~~---~~----~~~~~~~~~~~~l~~~~~~~~~g~~t~v~~~g~~LSgGqkqRi~lA 494 (1156)
++||+|++.+|.. ||+|||.|+.. .. .++.+++++.++|.+..+. ...+|||||||||+||
T Consensus 81 ig~vfQ~~~l~p~~tv~enl~~~l~~~~~~~~~~~~~v~~~l~~~gL~~~~~~-----------~~~~LSgGq~QRvaLA 149 (362)
T TIGR03258 81 LALLFQNYALFPHLKVEDNVAFGLRAQKMPKADIAERVADALKLVGLGDAAAH-----------LPAQLSGGMQQRIAIA 149 (362)
T ss_pred EEEEECCcccCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCCchhhC-----------ChhhCCHHHHHHHHHH
Confidence 7999999998865 99999998642 12 2456677888888665544 4468999999999999
Q ss_pred HhhccCCCeeeeeCCCCCcCHHHHHHHHHHHHh--cC--CCEEEEEccCCCccc-cCCEEEEEeCCeEEEccChHHHHhc
Q 037346 495 RPLYQDADIFLLDDPFSPVDDHTGAHLFKFCWV--SS--SKTVIYATHQVEFLP-AADLILVIKDGKITQAGKYSDILNS 569 (1156)
Q Consensus 495 ral~~~~~illlDep~s~lD~~~~~~i~~~~~~--~~--~~tvi~vtH~~~~~~-~~d~i~~l~~G~i~~~g~~~~l~~~ 569 (1156)
|||+.+|+++|||||||+||+..++++.+.+.. .+ |.|+|+|||+++.+. .||+|++|++|++++.|+++++...
T Consensus 150 RAL~~~P~llLLDEP~s~LD~~~r~~l~~~l~~l~~~~~g~til~vTHd~~ea~~l~dri~vl~~G~i~~~g~~~~~~~~ 229 (362)
T TIGR03258 150 RAIAIEPDVLLLDEPLSALDANIRANMREEIAALHEELPELTILCVTHDQDDALTLADKAGIMKDGRLAAHGEPQALYDA 229 (362)
T ss_pred HHHhcCCCEEEEcCccccCCHHHHHHHHHHHHHHHHhCCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhC
Confidence 999999999999999999999999998876643 23 789999999999875 5999999999999999999999865
Q ss_pred C
Q 037346 570 G 570 (1156)
Q Consensus 570 ~ 570 (1156)
.
T Consensus 230 p 230 (362)
T TIGR03258 230 P 230 (362)
T ss_pred c
Confidence 3
|
This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate. |
| >PRK13643 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-38 Score=354.94 Aligned_cols=201 Identities=25% Similarity=0.407 Sum_probs=171.9
Q ss_pred EEEeeeEEEeCCCC--CCCccccceEEeeCCeEEEEEcCCCCChHHHHHHHhCCCCCCCcEEEEcCe-------------
Q 037346 358 IEIIDGSFSWDFSS--PNPTLRNINLKVFHGMRVAVCGTVGSGKSSCLSCILGGVPKESGIIRLCGT------------- 422 (1156)
Q Consensus 358 i~~~~~~f~~~~~~--~~~~l~~i~l~i~~g~~~~ivG~~GsGKSTll~~i~g~~~~~~G~i~~~g~------------- 422 (1156)
|+++|++|+|+... .+++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.
T Consensus 2 i~~~~v~~~y~~~~~~~~~~l~~vsl~i~~Ge~v~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~ 81 (288)
T PRK13643 2 IKFEKVNYTYQPNSPFASRALFDIDLEVKKGSYTALIGHTGSGKSTLLQHLNGLLQPTEGKVTVGDIVVSSTSKQKEIKP 81 (288)
T ss_pred EEEEEEEEEeCCCCcccccceeeeEEEEcCCCEEEEECCCCChHHHHHHHHhcCCCCCCcEEEECCEECccccccccHHH
Confidence 78999999997321 136999999999999999999999999999999999999999999999873
Q ss_pred ----EEEEecCC--cCCCccHHHHhhcCCC---CC----HHHHHHHHHHhCCchhhhhCCCCCccccccCCCCCCHHHHH
Q 037346 423 ----KAYVAQSP--WIQSGKIEENILFGKE---MD----RERYERVLEACSLKKDLEVLPFGDQTIIGERGINLSGGQKQ 489 (1156)
Q Consensus 423 ----~~~v~Q~~--~~~~~ti~eni~~~~~---~~----~~~~~~~~~~~~l~~~~~~~~~g~~t~v~~~g~~LSgGqkq 489 (1156)
++||+|+| .++..|+.||+.|+.. .. ++++.++++.++|.+++ ..+...+|||||||
T Consensus 82 ~~~~ig~v~q~~~~~l~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~----------~~~~~~~LSgGqkq 151 (288)
T PRK13643 82 VRKKVGVVFQFPESQLFEETVLKDVAFGPQNFGIPKEKAEKIAAEKLEMVGLADEF----------WEKSPFELSGGQMR 151 (288)
T ss_pred HHhhEEEEecCcchhcccchHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCChhh----------ccCCcccCCHHHHH
Confidence 58999998 6788899999998742 22 23466677777774322 12455789999999
Q ss_pred HHHHHHhhccCCCeeeeeCCCCCcCHHHHHHHHHHHHh--cCCCEEEEEccCCCccc-cCCEEEEEeCCeEEEccChHHH
Q 037346 490 RIQIARPLYQDADIFLLDDPFSPVDDHTGAHLFKFCWV--SSSKTVIYATHQVEFLP-AADLILVIKDGKITQAGKYSDI 566 (1156)
Q Consensus 490 Ri~lAral~~~~~illlDep~s~lD~~~~~~i~~~~~~--~~~~tvi~vtH~~~~~~-~~d~i~~l~~G~i~~~g~~~~l 566 (1156)
|++|||||+.+|+++||||||++||+.++..+.+.+.. .+|+|+|++||+++.+. .||+|++|++|++++.|+++++
T Consensus 152 rvaiA~aL~~~p~illLDEPt~gLD~~~~~~l~~~l~~l~~~g~til~vtHd~~~~~~~~dri~~l~~G~i~~~g~~~~~ 231 (288)
T PRK13643 152 RVAIAGILAMEPEVLVLDEPTAGLDPKARIEMMQLFESIHQSGQTVVLVTHLMDDVADYADYVYLLEKGHIISCGTPSDV 231 (288)
T ss_pred HHHHHHHHHhCCCEEEEECCccCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEECCHHHH
Confidence 99999999999999999999999999999988876543 35899999999999885 5999999999999999999988
Q ss_pred Hh
Q 037346 567 LN 568 (1156)
Q Consensus 567 ~~ 568 (1156)
..
T Consensus 232 ~~ 233 (288)
T PRK13643 232 FQ 233 (288)
T ss_pred Hc
Confidence 65
|
|
| >PRK13650 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-38 Score=353.89 Aligned_cols=202 Identities=29% Similarity=0.415 Sum_probs=173.6
Q ss_pred cEEEeeeEEEeCCCCCCCccccceEEeeCCeEEEEEcCCCCChHHHHHHHhCCCCCCCcEEEEcCe-------------E
Q 037346 357 AIEIIDGSFSWDFSSPNPTLRNINLKVFHGMRVAVCGTVGSGKSSCLSCILGGVPKESGIIRLCGT-------------K 423 (1156)
Q Consensus 357 ~i~~~~~~f~~~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKSTll~~i~g~~~~~~G~i~~~g~-------------~ 423 (1156)
.++++|++++|+.....++|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.++|. +
T Consensus 4 ~l~~~~l~~~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~i 83 (279)
T PRK13650 4 IIEVKNLTFKYKEDQEKYTLNDVSFHVKQGEWLSIIGHNGSGKSTTVRLIDGLLEAESGQIIIDGDLLTEENVWDIRHKI 83 (279)
T ss_pred eEEEEeEEEEcCCCCcCeeeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEECCcCcHHHHHhhc
Confidence 489999999996422346999999999999999999999999999999999999999999999883 6
Q ss_pred EEEecCCc--CCCccHHHHhhcCCC---CC----HHHHHHHHHHhCCchhhhhCCCCCccccccCCCCCCHHHHHHHHHH
Q 037346 424 AYVAQSPW--IQSGKIEENILFGKE---MD----RERYERVLEACSLKKDLEVLPFGDQTIIGERGINLSGGQKQRIQIA 494 (1156)
Q Consensus 424 ~~v~Q~~~--~~~~ti~eni~~~~~---~~----~~~~~~~~~~~~l~~~~~~~~~g~~t~v~~~g~~LSgGqkqRi~lA 494 (1156)
+|++|+|. ++..||+|||.|+.. .+ .++..++++.++|.+..+. ...+||||||||++||
T Consensus 84 ~~v~q~~~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~-----------~~~~LSgGq~qrv~lA 152 (279)
T PRK13650 84 GMVFQNPDNQFVGATVEDDVAFGLENKGIPHEEMKERVNEALELVGMQDFKER-----------EPARLSGGQKQRVAIA 152 (279)
T ss_pred eEEEcChHHhcccccHHHHHHhhHHhCCCCHHHHHHHHHHHHHHCCCHhHhhC-----------CcccCCHHHHHHHHHH
Confidence 89999984 566799999998732 22 2456677888888655443 3468999999999999
Q ss_pred HhhccCCCeeeeeCCCCCcCHHHHHHHHHHHHh--c-CCCEEEEEccCCCccccCCEEEEEeCCeEEEccChHHHHhc
Q 037346 495 RPLYQDADIFLLDDPFSPVDDHTGAHLFKFCWV--S-SSKTVIYATHQVEFLPAADLILVIKDGKITQAGKYSDILNS 569 (1156)
Q Consensus 495 ral~~~~~illlDep~s~lD~~~~~~i~~~~~~--~-~~~tvi~vtH~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~ 569 (1156)
|||+.+|+++||||||++||+.+++.+.+.+.. . .|+|+|++||+++.+..||+|++|++|+++..|+++++...
T Consensus 153 ral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tilivtH~~~~~~~~dri~~l~~G~i~~~g~~~~~~~~ 230 (279)
T PRK13650 153 GAVAMRPKIIILDEATSMLDPEGRLELIKTIKGIRDDYQMTVISITHDLDEVALSDRVLVMKNGQVESTSTPRELFSR 230 (279)
T ss_pred HHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHhCCEEEEEECCEEEEECCHHHHHcC
Confidence 999999999999999999999999988876643 2 48999999999998877999999999999999999887653
|
|
| >TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-38 Score=363.87 Aligned_cols=187 Identities=26% Similarity=0.365 Sum_probs=163.1
Q ss_pred CCCccccceEEeeCCeEEEEEcCCCCChHHHHHHHhCCCCCCCcEEEEcC-----------------eEEEEecCCcCCC
Q 037346 372 PNPTLRNINLKVFHGMRVAVCGTVGSGKSSCLSCILGGVPKESGIIRLCG-----------------TKAYVAQSPWIQS 434 (1156)
Q Consensus 372 ~~~~l~~i~l~i~~g~~~~ivG~~GsGKSTll~~i~g~~~~~~G~i~~~g-----------------~~~~v~Q~~~~~~ 434 (1156)
++.+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++| .++||+|++++|+
T Consensus 5 ~~~~l~~vs~~i~~Gei~~l~G~sGsGKSTLLr~L~Gl~~p~~G~I~i~G~~i~~~~~~~~~~~rr~~i~~v~Q~~~l~~ 84 (363)
T TIGR01186 5 GKKGVNDADLAIAKGEIFVIMGLSGSGKSTTVRMLNRLIEPTAGQIFIDGENIMKQSPVELREVRRKKIGMVFQQFALFP 84 (363)
T ss_pred CceeEEeeEEEEcCCCEEEEECCCCChHHHHHHHHhCCCCCCceEEEECCEECCcCCHHHHHHHHhCcEEEEECCCcCCC
Confidence 45799999999999999999999999999999999999999999999988 3799999999987
Q ss_pred -ccHHHHhhcCCCC---C----HHHHHHHHHHhCCchhhhhCCCCCccccccCCCCCCHHHHHHHHHHHhhccCCCeeee
Q 037346 435 -GKIEENILFGKEM---D----RERYERVLEACSLKKDLEVLPFGDQTIIGERGINLSGGQKQRIQIARPLYQDADIFLL 506 (1156)
Q Consensus 435 -~ti~eni~~~~~~---~----~~~~~~~~~~~~l~~~~~~~~~g~~t~v~~~g~~LSgGqkqRi~lAral~~~~~illl 506 (1156)
.||+|||.|+... + .++..++++.++|.... ++.+.+|||||||||+|||||+.+|+++||
T Consensus 85 ~~TV~eNi~~~~~~~~~~~~~~~~~~~~~l~~vgL~~~~-----------~~~p~~LSGGq~QRV~lARAL~~~p~iLLl 153 (363)
T TIGR01186 85 HMTILQNTSLGPELLGWPEQERKEKALELLKLVGLEEYE-----------HRYPDELSGGMQQRVGLARALAAEPDILLM 153 (363)
T ss_pred CCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCchhh-----------hCChhhCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 5999999986432 2 23445566666765444 345578999999999999999999999999
Q ss_pred eCCCCCcCHHHHHHHHHHHHh---cCCCEEEEEccCCCcc-ccCCEEEEEeCCeEEEccChHHHHhc
Q 037346 507 DDPFSPVDDHTGAHLFKFCWV---SSSKTVIYATHQVEFL-PAADLILVIKDGKITQAGKYSDILNS 569 (1156)
Q Consensus 507 Dep~s~lD~~~~~~i~~~~~~---~~~~tvi~vtH~~~~~-~~~d~i~~l~~G~i~~~g~~~~l~~~ 569 (1156)
|||||+||+.+++++.+.+.. ..++|+|+|||+++.+ +.||+|++|++|++++.|++++++..
T Consensus 154 DEP~saLD~~~r~~l~~~l~~l~~~~~~Tii~vTHd~~ea~~~~drI~vl~~G~iv~~g~~~ei~~~ 220 (363)
T TIGR01186 154 DEAFSALDPLIRDSMQDELKKLQATLQKTIVFITHDLDEAIRIGDRIVIMKAGEIVQVGTPDEILRN 220 (363)
T ss_pred eCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeCCEEEeeCCHHHHHhC
Confidence 999999999999999887654 3489999999999986 56999999999999999999998764
|
This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact |
| >PRK13634 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.9e-38 Score=354.24 Aligned_cols=202 Identities=25% Similarity=0.420 Sum_probs=172.4
Q ss_pred EEEeeeEEEeCCCC--CCCccccceEEeeCCeEEEEEcCCCCChHHHHHHHhCCCCCCCcEEEEcCe-------------
Q 037346 358 IEIIDGSFSWDFSS--PNPTLRNINLKVFHGMRVAVCGTVGSGKSSCLSCILGGVPKESGIIRLCGT------------- 422 (1156)
Q Consensus 358 i~~~~~~f~~~~~~--~~~~l~~i~l~i~~g~~~~ivG~~GsGKSTll~~i~g~~~~~~G~i~~~g~------------- 422 (1156)
++++|++|+|+... ..++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+
T Consensus 3 l~~~~l~~~y~~~~~~~~~~L~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~ 82 (290)
T PRK13634 3 ITFQKVEHRYQYKTPFERRALYDVNVSIPSGSYVAIIGHTGSGKSTLLQHLNGLLQPTSGTVTIGERVITAGKKNKKLKP 82 (290)
T ss_pred EEEEEEEEEECCCCcccccceeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEECccccccchHHH
Confidence 78999999996322 246999999999999999999999999999999999999999999999883
Q ss_pred ----EEEEecCC--cCCCccHHHHhhcCCC---CC----HHHHHHHHHHhCCchhhhhCCCCCccccccCCCCCCHHHHH
Q 037346 423 ----KAYVAQSP--WIQSGKIEENILFGKE---MD----RERYERVLEACSLKKDLEVLPFGDQTIIGERGINLSGGQKQ 489 (1156)
Q Consensus 423 ----~~~v~Q~~--~~~~~ti~eni~~~~~---~~----~~~~~~~~~~~~l~~~~~~~~~g~~t~v~~~g~~LSgGqkq 489 (1156)
++||+|+| .+++.||+|||.|+.. .+ .++.+++++.++|...+. ...+.+|||||||
T Consensus 83 ~~~~ig~v~q~~~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~----------~~~~~~LSgGq~q 152 (290)
T PRK13634 83 LRKKVGIVFQFPEHQLFEETVEKDICFGPMNFGVSEEDAKQKAREMIELVGLPEELL----------ARSPFELSGGQMR 152 (290)
T ss_pred HHhhEEEEeeCchhhhhhhhHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCChhhh----------hCCcccCCHHHHH
Confidence 68999998 5777899999998632 22 235567777888753321 2445789999999
Q ss_pred HHHHHHhhccCCCeeeeeCCCCCcCHHHHHHHHHHHHh---cCCCEEEEEccCCCccc-cCCEEEEEeCCeEEEccChHH
Q 037346 490 RIQIARPLYQDADIFLLDDPFSPVDDHTGAHLFKFCWV---SSSKTVIYATHQVEFLP-AADLILVIKDGKITQAGKYSD 565 (1156)
Q Consensus 490 Ri~lAral~~~~~illlDep~s~lD~~~~~~i~~~~~~---~~~~tvi~vtH~~~~~~-~~d~i~~l~~G~i~~~g~~~~ 565 (1156)
|++|||||+.+|+++||||||++||+.++..+.+.+.. ..|.|||++||+++.+. .||+|++|++|++++.|++++
T Consensus 153 rv~lAraL~~~P~llllDEPt~~LD~~~~~~l~~~L~~l~~~~g~tviiitHd~~~~~~~~drv~~l~~G~i~~~g~~~~ 232 (290)
T PRK13634 153 RVAIAGVLAMEPEVLVLDEPTAGLDPKGRKEMMEMFYKLHKEKGLTTVLVTHSMEDAARYADQIVVMHKGTVFLQGTPRE 232 (290)
T ss_pred HHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHH
Confidence 99999999999999999999999999999988876643 24899999999999875 599999999999999999988
Q ss_pred HHhc
Q 037346 566 ILNS 569 (1156)
Q Consensus 566 l~~~ 569 (1156)
+.+.
T Consensus 233 ~~~~ 236 (290)
T PRK13634 233 IFAD 236 (290)
T ss_pred HhcC
Confidence 7653
|
|
| >cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.6e-38 Score=345.03 Aligned_cols=198 Identities=28% Similarity=0.422 Sum_probs=168.9
Q ss_pred cEEEeeeEEEeCCCCCCCccccceEEeeCCeEEEEEcCCCCChHHHHHHHhCCCCCCCcEEEEcC-----------eEEE
Q 037346 357 AIEIIDGSFSWDFSSPNPTLRNINLKVFHGMRVAVCGTVGSGKSSCLSCILGGVPKESGIIRLCG-----------TKAY 425 (1156)
Q Consensus 357 ~i~~~~~~f~~~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKSTll~~i~g~~~~~~G~i~~~g-----------~~~~ 425 (1156)
.++++|+++.|+ ++++|+|+||++++|++++|+||||||||||+++|+|+++|++|+|.++| .++|
T Consensus 2 ~l~~~~l~~~~~---~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~i~~ 78 (239)
T cd03296 2 SIEVRNVSKRFG---DFVALDDVSLDIPSGELVALLGPSGSGKTTLLRLIAGLERPDSGTILFGGEDATDVPVQERNVGF 78 (239)
T ss_pred EEEEEeEEEEEC---CEEeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCCccccceEE
Confidence 378999999996 35799999999999999999999999999999999999999999999987 2799
Q ss_pred EecCCcCCC-ccHHHHhhcCCCC-------C----HHHHHHHHHHhCCchhhhhCCCCCccccccCCCCCCHHHHHHHHH
Q 037346 426 VAQSPWIQS-GKIEENILFGKEM-------D----RERYERVLEACSLKKDLEVLPFGDQTIIGERGINLSGGQKQRIQI 493 (1156)
Q Consensus 426 v~Q~~~~~~-~ti~eni~~~~~~-------~----~~~~~~~~~~~~l~~~~~~~~~g~~t~v~~~g~~LSgGqkqRi~l 493 (1156)
++|+|.++. .|++||+.++... + .++..++++.+++.+.. .....+||||||||++|
T Consensus 79 v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-----------~~~~~~LS~G~~qrl~l 147 (239)
T cd03296 79 VFQHYALFRHMTVFDNVAFGLRVKPRSERPPEAEIRAKVHELLKLVQLDWLA-----------DRYPAQLSGGQRQRVAL 147 (239)
T ss_pred EecCCcccCCCCHHHHHhhhhhhccccccCCHHHHHHHHHHHHHHcCChhhh-----------hcChhhCCHHHHHHHHH
Confidence 999998875 5999999876321 1 12345566666665433 34457899999999999
Q ss_pred HHhhccCCCeeeeeCCCCCcCHHHHHHHHHHHHh--c-CCCEEEEEccCCCccc-cCCEEEEEeCCeEEEccChHHHHh
Q 037346 494 ARPLYQDADIFLLDDPFSPVDDHTGAHLFKFCWV--S-SSKTVIYATHQVEFLP-AADLILVIKDGKITQAGKYSDILN 568 (1156)
Q Consensus 494 Aral~~~~~illlDep~s~lD~~~~~~i~~~~~~--~-~~~tvi~vtH~~~~~~-~~d~i~~l~~G~i~~~g~~~~l~~ 568 (1156)
||||+.+|+++||||||++||+.+++.+.+.+.. . .|+|+|++||+++.+. .||+|++|++|++++.|+++++.+
T Consensus 148 a~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tvii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~ 226 (239)
T cd03296 148 ARALAVEPKVLLLDEPFGALDAKVRKELRRWLRRLHDELHVTTVFVTHDQEEALEVADRVVVMNKGRIEQVGTPDEVYD 226 (239)
T ss_pred HHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCeEEEecCHHHHhc
Confidence 9999999999999999999999999988876643 2 3789999999999875 599999999999999999888764
|
Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-38 Score=340.39 Aligned_cols=190 Identities=33% Similarity=0.417 Sum_probs=162.5
Q ss_pred EEEeeeEEEeCCCCCCCccccceEEeeCCeEEEEEcCCCCChHHHHHHHhCCCCCCCcEEEEcCe-----------EEEE
Q 037346 358 IEIIDGSFSWDFSSPNPTLRNINLKVFHGMRVAVCGTVGSGKSSCLSCILGGVPKESGIIRLCGT-----------KAYV 426 (1156)
Q Consensus 358 i~~~~~~f~~~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKSTll~~i~g~~~~~~G~i~~~g~-----------~~~v 426 (1156)
++++|+++.|+ ++++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|. ++|+
T Consensus 1 l~~~~l~~~~~---~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~i~~v 77 (213)
T cd03259 1 LELKGLSKTYG---SVRALDDLSLTVEPGEFLALLGPSGCGKTTLLRLIAGLERPDSGEILIDGRDVTGVPPERRNIGMV 77 (213)
T ss_pred CeeeeeEEEeC---CeeeecceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEcCcCchhhccEEEE
Confidence 46899999996 357999999999999999999999999999999999999999999999873 7999
Q ss_pred ecCCcCCC-ccHHHHhhcCCC---CC----HHHHHHHHHHhCCchhhhhCCCCCccccccCCCCCCHHHHHHHHHHHhhc
Q 037346 427 AQSPWIQS-GKIEENILFGKE---MD----RERYERVLEACSLKKDLEVLPFGDQTIIGERGINLSGGQKQRIQIARPLY 498 (1156)
Q Consensus 427 ~Q~~~~~~-~ti~eni~~~~~---~~----~~~~~~~~~~~~l~~~~~~~~~g~~t~v~~~g~~LSgGqkqRi~lAral~ 498 (1156)
||+|.++. .|++||+.++.. .+ .++.+++++.+++.+... +...+||||||||++|||||+
T Consensus 78 ~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-----------~~~~~LSgG~~qrl~la~al~ 146 (213)
T cd03259 78 FQDYALFPHLTVAENIAFGLKLRGVPKAEIRARVRELLELVGLEGLLN-----------RYPHELSGGQQQRVALARALA 146 (213)
T ss_pred cCchhhccCCcHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCChhhhh-----------cChhhCCHHHHHHHHHHHHHh
Confidence 99998775 699999987532 12 234556677777765443 344689999999999999999
Q ss_pred cCCCeeeeeCCCCCcCHHHHHHHHHHHHh--c-CCCEEEEEccCCCccc-cCCEEEEEeCCeEEEcc
Q 037346 499 QDADIFLLDDPFSPVDDHTGAHLFKFCWV--S-SSKTVIYATHQVEFLP-AADLILVIKDGKITQAG 561 (1156)
Q Consensus 499 ~~~~illlDep~s~lD~~~~~~i~~~~~~--~-~~~tvi~vtH~~~~~~-~~d~i~~l~~G~i~~~g 561 (1156)
.+|+++||||||++||+.+++.+.+.+.. . .|+|+|++||+++.+. .||+|++|++|++++.|
T Consensus 147 ~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~~d~v~~l~~G~i~~~g 213 (213)
T cd03259 147 REPSLLLLDEPLSALDAKLREELREELKELQRELGITTIYVTHDQEEALALADRIAVMNEGRIVQVG 213 (213)
T ss_pred cCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEecCHHHHHHhcCEEEEEECCEEEecC
Confidence 99999999999999999999998886644 2 4899999999999875 59999999999998765
|
This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK11000 maltose/maltodextrin transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.5e-38 Score=363.66 Aligned_cols=199 Identities=29% Similarity=0.386 Sum_probs=172.9
Q ss_pred cEEEeeeEEEeCCCCCCCccccceEEeeCCeEEEEEcCCCCChHHHHHHHhCCCCCCCcEEEEcCe-----------EEE
Q 037346 357 AIEIIDGSFSWDFSSPNPTLRNINLKVFHGMRVAVCGTVGSGKSSCLSCILGGVPKESGIIRLCGT-----------KAY 425 (1156)
Q Consensus 357 ~i~~~~~~f~~~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKSTll~~i~g~~~~~~G~i~~~g~-----------~~~ 425 (1156)
.++++|++++|+ +..+|+|+||+|++|++++|+||||||||||+++|+|+++|++|+|.++|+ ++|
T Consensus 3 ~l~i~~l~~~~~---~~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLL~~iaGl~~p~~G~I~~~g~~i~~~~~~~~~i~~ 79 (369)
T PRK11000 3 SVTLRNVTKAYG---DVVISKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLEDITSGDLFIGEKRMNDVPPAERGVGM 79 (369)
T ss_pred EEEEEEEEEEeC---CeEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCCCCHhHCCEEE
Confidence 488999999996 356999999999999999999999999999999999999999999999883 799
Q ss_pred EecCCcCCC-ccHHHHhhcCCC---CC----HHHHHHHHHHhCCchhhhhCCCCCccccccCCCCCCHHHHHHHHHHHhh
Q 037346 426 VAQSPWIQS-GKIEENILFGKE---MD----RERYERVLEACSLKKDLEVLPFGDQTIIGERGINLSGGQKQRIQIARPL 497 (1156)
Q Consensus 426 v~Q~~~~~~-~ti~eni~~~~~---~~----~~~~~~~~~~~~l~~~~~~~~~g~~t~v~~~g~~LSgGqkqRi~lAral 497 (1156)
++|++.+|. .|++||+.|+.. .+ .++.+++++.+++.+..+ ....+|||||||||+|||||
T Consensus 80 v~Q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~-----------~~~~~LSgGq~QRvaLAraL 148 (369)
T PRK11000 80 VFQSYALYPHLSVAENMSFGLKLAGAKKEEINQRVNQVAEVLQLAHLLD-----------RKPKALSGGQRQRVAIGRTL 148 (369)
T ss_pred EeCCcccCCCCCHHHHHHhHHhhcCCCHHHHHHHHHHHHHHcCChhhhc-----------CChhhCCHHHHHHHHHHHHH
Confidence 999998886 599999998642 22 245667777777765443 34468999999999999999
Q ss_pred ccCCCeeeeeCCCCCcCHHHHHHHHHHHHh---cCCCEEEEEccCCCccc-cCCEEEEEeCCeEEEccChHHHHhc
Q 037346 498 YQDADIFLLDDPFSPVDDHTGAHLFKFCWV---SSSKTVIYATHQVEFLP-AADLILVIKDGKITQAGKYSDILNS 569 (1156)
Q Consensus 498 ~~~~~illlDep~s~lD~~~~~~i~~~~~~---~~~~tvi~vtH~~~~~~-~~d~i~~l~~G~i~~~g~~~~l~~~ 569 (1156)
+.+|+++||||||++||+.+++.+.+.+.. ..|.|+|+|||+++.+. .||+|++|++|++++.|+++++...
T Consensus 149 ~~~P~lLLLDEPts~LD~~~~~~l~~~L~~l~~~~g~tvI~vTHd~~~~~~~~d~i~vl~~G~i~~~g~~~~i~~~ 224 (369)
T PRK11000 149 VAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKRLGRTMIYVTHDQVEAMTLADKIVVLDAGRVAQVGKPLELYHY 224 (369)
T ss_pred hcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHhCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhC
Confidence 999999999999999999999988776543 24889999999998875 5999999999999999999998754
|
|
| >cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine | Back alignment and domain information |
|---|
Probab=100.00 E-value=4e-38 Score=345.23 Aligned_cols=197 Identities=24% Similarity=0.382 Sum_probs=167.1
Q ss_pred EEEeeeEEEeCCCCCCCccccceEEeeCCeEEEEEcCCCCChHHHHHHHhCCCCCCCcEEEEcCe--------------E
Q 037346 358 IEIIDGSFSWDFSSPNPTLRNINLKVFHGMRVAVCGTVGSGKSSCLSCILGGVPKESGIIRLCGT--------------K 423 (1156)
Q Consensus 358 i~~~~~~f~~~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKSTll~~i~g~~~~~~G~i~~~g~--------------~ 423 (1156)
++++|+++.|+ ++++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|. +
T Consensus 1 l~~~~l~~~~~---~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~i 77 (236)
T cd03219 1 LEVRGLTKRFG---GLVALDDVSFSVRPGEIHGLIGPNGAGKTTLFNLISGFLRPTSGSVLFDGEDITGLPPHEIARLGI 77 (236)
T ss_pred CeeeeeEEEEC---CEEEecCceEEecCCcEEEEECCCCCCHHHHHHHHcCCCCCCCceEEECCEECCCCCHHHHHhcCE
Confidence 46899999996 346999999999999999999999999999999999999999999999872 6
Q ss_pred EEEecCCcCCCc-cHHHHhhcCCCC-------------C----HHHHHHHHHHhCCchhhhhCCCCCccccccCCCCCCH
Q 037346 424 AYVAQSPWIQSG-KIEENILFGKEM-------------D----RERYERVLEACSLKKDLEVLPFGDQTIIGERGINLSG 485 (1156)
Q Consensus 424 ~~v~Q~~~~~~~-ti~eni~~~~~~-------------~----~~~~~~~~~~~~l~~~~~~~~~g~~t~v~~~g~~LSg 485 (1156)
+|++|++.++.. |++||+.++... + .++..++++.+++.. ..+....+|||
T Consensus 78 ~~v~q~~~l~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-----------~~~~~~~~LSg 146 (236)
T cd03219 78 GRTFQIPRLFPELTVLENVMVAAQARTGSGLLLARARREEREARERAEELLERVGLAD-----------LADRPAGELSY 146 (236)
T ss_pred EEEecccccccCCCHHHHHHHHHhhccccccccccccccHHHHHHHHHHHHHHcCccc-----------hhhCChhhCCH
Confidence 899999988775 999999875321 0 123444555555533 23456678999
Q ss_pred HHHHHHHHHHhhccCCCeeeeeCCCCCcCHHHHHHHHHHHHh--cCCCEEEEEccCCCcccc-CCEEEEEeCCeEEEccC
Q 037346 486 GQKQRIQIARPLYQDADIFLLDDPFSPVDDHTGAHLFKFCWV--SSSKTVIYATHQVEFLPA-ADLILVIKDGKITQAGK 562 (1156)
Q Consensus 486 GqkqRi~lAral~~~~~illlDep~s~lD~~~~~~i~~~~~~--~~~~tvi~vtH~~~~~~~-~d~i~~l~~G~i~~~g~ 562 (1156)
|||||++||||++.+|+++||||||++||+.+++.+.+.+.. .+|+|+|++||+++.+.. ||+|++|++|++++.|+
T Consensus 147 G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~vsH~~~~~~~~~d~i~~l~~G~i~~~~~ 226 (236)
T cd03219 147 GQQRRLEIARALATDPKLLLLDEPAAGLNPEETEELAELIRELRERGITVLLVEHDMDVVMSLADRVTVLDQGRVIAEGT 226 (236)
T ss_pred HHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEEEEeCCEEEeecC
Confidence 999999999999999999999999999999999998886644 368999999999999864 99999999999999999
Q ss_pred hHHHHh
Q 037346 563 YSDILN 568 (1156)
Q Consensus 563 ~~~l~~ 568 (1156)
++++..
T Consensus 227 ~~~~~~ 232 (236)
T cd03219 227 PDEVRN 232 (236)
T ss_pred HHHhcc
Confidence 887753
|
MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). |
| >cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-38 Score=343.71 Aligned_cols=196 Identities=27% Similarity=0.395 Sum_probs=166.1
Q ss_pred EEEeeeEEEeCCCCCCCccccceEEeeCCeEEEEEcCCCCChHHHHHHHhCCC-----CCCCcEEEEcCe----------
Q 037346 358 IEIIDGSFSWDFSSPNPTLRNINLKVFHGMRVAVCGTVGSGKSSCLSCILGGV-----PKESGIIRLCGT---------- 422 (1156)
Q Consensus 358 i~~~~~~f~~~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKSTll~~i~g~~-----~~~~G~i~~~g~---------- 422 (1156)
|+++|++++|+ ++++|+|+||+|++||+++|+||||||||||+++|+|++ +|++|+|.++|.
T Consensus 1 i~~~~l~~~~~---~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~~~~ 77 (227)
T cd03260 1 IELRDLNVYYG---DKHALKDISLDIPKGEITALIGPSGCGKSTLLRLLNRLNDLIPGAPDEGEVLLDGKDIYDLDVDVL 77 (227)
T ss_pred CEEEEEEEEcC---CceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCCeEEEECCEEhhhcchHHH
Confidence 46899999996 347999999999999999999999999999999999999 999999999872
Q ss_pred -----EEEEecCCcCCCccHHHHhhcCCC---C-C----HHHHHHHHHHhCCchhhhhCCCCCccccccCCCCCCHHHHH
Q 037346 423 -----KAYVAQSPWIQSGKIEENILFGKE---M-D----RERYERVLEACSLKKDLEVLPFGDQTIIGERGINLSGGQKQ 489 (1156)
Q Consensus 423 -----~~~v~Q~~~~~~~ti~eni~~~~~---~-~----~~~~~~~~~~~~l~~~~~~~~~g~~t~v~~~g~~LSgGqkq 489 (1156)
++|++|++.++..|++||+.++.. . . +++..++++.+++.+.+...++ +.+|||||||
T Consensus 78 ~~~~~i~~~~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~---------~~~LSgG~~q 148 (227)
T cd03260 78 ELRRRVGMVFQKPNPFPGSIYDNVAYGLRLHGIKLKEELDERVEEALRKAALWDEVKDRLH---------ALGLSGGQQQ 148 (227)
T ss_pred HHHhhEEEEecCchhccccHHHHHHhHHHhcCCCcHHHHHHHHHHHHHHcCCChHHhccCC---------cccCCHHHHH
Confidence 689999998887899999987532 1 1 2345667777777654432210 4689999999
Q ss_pred HHHHHHhhccCCCeeeeeCCCCCcCHHHHHHHHHHHHhc-CCCEEEEEccCCCccc-cCCEEEEEeCCeEEEccChHH
Q 037346 490 RIQIARPLYQDADIFLLDDPFSPVDDHTGAHLFKFCWVS-SSKTVIYATHQVEFLP-AADLILVIKDGKITQAGKYSD 565 (1156)
Q Consensus 490 Ri~lAral~~~~~illlDep~s~lD~~~~~~i~~~~~~~-~~~tvi~vtH~~~~~~-~~d~i~~l~~G~i~~~g~~~~ 565 (1156)
|++||||++.+|+++||||||++||+.+++.+.+.+... +.+|+|++||+++.+. .||++++|++|++++.|++++
T Consensus 149 rv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~ 226 (227)
T cd03260 149 RLCLARALANEPEVLLLDEPTSALDPISTAKIEELIAELKKEYTIVIVTHNMQQAARVADRTAFLLNGRLVEFGPTEQ 226 (227)
T ss_pred HHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhhCcEEEEEeccHHHHHHhCCEEEEEeCCEEEEecCccc
Confidence 999999999999999999999999999999998876542 2389999999999876 599999999999999887654
|
The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD). |
| >PRK13647 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.3e-38 Score=351.19 Aligned_cols=197 Identities=30% Similarity=0.435 Sum_probs=170.8
Q ss_pred cEEEeeeEEEeCCCCCCCccccceEEeeCCeEEEEEcCCCCChHHHHHHHhCCCCCCCcEEEEcCe-------------E
Q 037346 357 AIEIIDGSFSWDFSSPNPTLRNINLKVFHGMRVAVCGTVGSGKSSCLSCILGGVPKESGIIRLCGT-------------K 423 (1156)
Q Consensus 357 ~i~~~~~~f~~~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKSTll~~i~g~~~~~~G~i~~~g~-------------~ 423 (1156)
.++++|+++.|+. +.++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|. +
T Consensus 4 ~l~~~~l~~~~~~--~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i 81 (274)
T PRK13647 4 IIEVEDLHFRYKD--GTKALKGLSLSIPEGSKTALLGPNGAGKSTLLLHLNGIYLPQRGRVKVMGREVNAENEKWVRSKV 81 (274)
T ss_pred eEEEEEEEEEeCC--CCeeeeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCceEEEECCEECCCCCHHHHHhhE
Confidence 5899999999962 346999999999999999999999999999999999999999999999882 6
Q ss_pred EEEecCC--cCCCccHHHHhhcCCC---CC----HHHHHHHHHHhCCchhhhhCCCCCccccccCCCCCCHHHHHHHHHH
Q 037346 424 AYVAQSP--WIQSGKIEENILFGKE---MD----RERYERVLEACSLKKDLEVLPFGDQTIIGERGINLSGGQKQRIQIA 494 (1156)
Q Consensus 424 ~~v~Q~~--~~~~~ti~eni~~~~~---~~----~~~~~~~~~~~~l~~~~~~~~~g~~t~v~~~g~~LSgGqkqRi~lA 494 (1156)
+|++|+| .++..|++||+.|+.. .+ ++++.++++.+++.+..... ..+||||||||++||
T Consensus 82 ~~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~-----------~~~LSgG~~qrv~la 150 (274)
T PRK13647 82 GLVFQDPDDQVFSSTVWDDVAFGPVNMGLDKDEVERRVEEALKAVRMWDFRDKP-----------PYHLSYGQKKRVAIA 150 (274)
T ss_pred EEEecChhhhhccCcHHHHHHhhHHHcCCCHHHHHHHHHHHHHHCCCHHHhcCC-----------hhhCCHHHHHHHHHH
Confidence 9999998 5678899999998632 22 24566778888886555433 358999999999999
Q ss_pred HhhccCCCeeeeeCCCCCcCHHHHHHHHHHHHh--cCCCEEEEEccCCCccc-cCCEEEEEeCCeEEEccChHHH
Q 037346 495 RPLYQDADIFLLDDPFSPVDDHTGAHLFKFCWV--SSSKTVIYATHQVEFLP-AADLILVIKDGKITQAGKYSDI 566 (1156)
Q Consensus 495 ral~~~~~illlDep~s~lD~~~~~~i~~~~~~--~~~~tvi~vtH~~~~~~-~~d~i~~l~~G~i~~~g~~~~l 566 (1156)
|||+.+|+++||||||++||+.++.++.+.+.. .+|+|+|++||+++.+. .||+|++|++|++++.|+++++
T Consensus 151 raL~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tili~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~ 225 (274)
T PRK13647 151 GVLAMDPDVIVLDEPMAYLDPRGQETLMEILDRLHNQGKTVIVATHDVDLAAEWADQVIVLKEGRVLAEGDKSLL 225 (274)
T ss_pred HHHHcCCCEEEEECCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHh
Confidence 999999999999999999999999998876643 34899999999999985 6999999999999999998654
|
|
| >KOG0065 consensus Pleiotropic drug resistance proteins (PDR1-15), ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-36 Score=371.25 Aligned_cols=190 Identities=23% Similarity=0.291 Sum_probs=155.5
Q ss_pred CCCccccceEEeeCCeEEEEEcCCCCChHHHHHHHhCCCCCC---CcEEEEcCe----------EEEEecCCcCC-CccH
Q 037346 372 PNPTLRNINLKVFHGMRVAVCGTVGSGKSSCLSCILGGVPKE---SGIIRLCGT----------KAYVAQSPWIQ-SGKI 437 (1156)
Q Consensus 372 ~~~~l~~i~l~i~~g~~~~ivG~~GsGKSTll~~i~g~~~~~---~G~i~~~g~----------~~~v~Q~~~~~-~~ti 437 (1156)
...+|+|++.-+++|+.+.+.||.|||||||++++.|..+-. .|+|..||. ++|++|+...+ ..||
T Consensus 127 ~~~il~~~sg~~~pg~m~lvLG~pgsG~ttllkal~g~~~~~~~~~~~isy~G~~~~e~~~~~~~aY~~e~DvH~p~lTV 206 (1391)
T KOG0065|consen 127 KIQILKDISGIIKPGEMTLVLGPPGSGKTTLLKALAGKLDNFLKSSGEITYNGHDLKEFVPKKTVAYNSEQDVHFPELTV 206 (1391)
T ss_pred cceeecCcceeEcCCceEEEecCCCCchHHHHHHHhCCCcccccCCCceeECCCcccccccCceEEeccccccccceeEE
Confidence 346899999999999999999999999999999999998643 568999883 69999988755 5699
Q ss_pred HHHhhcCC-------CCC---HHHHH-----HHHHHhCCchhhhhCCCCCccccccCC-CCCCHHHHHHHHHHHhhccCC
Q 037346 438 EENILFGK-------EMD---RERYE-----RVLEACSLKKDLEVLPFGDQTIIGERG-INLSGGQKQRIQIARPLYQDA 501 (1156)
Q Consensus 438 ~eni~~~~-------~~~---~~~~~-----~~~~~~~l~~~~~~~~~g~~t~v~~~g-~~LSgGqkqRi~lAral~~~~ 501 (1156)
||-+-|.. .++ +..+. .+++..||+ ...||.||... ...|||||.||++|-++..++
T Consensus 207 reTldFa~rck~~~~r~~~~~R~e~~~~~~d~~lkilGL~-------~~~dT~VGnd~~RGvSGGerKRvsi~E~~v~~~ 279 (1391)
T KOG0065|consen 207 RETLDFAARCKGPGSRYDEVSRREKLAAMTDYLLKILGLD-------HCADTLVGNDMVRGVSGGERKRVSIGEMLVGPA 279 (1391)
T ss_pred eehhhHHHhccCCccccccccHHHHHHHHHHHHHHHhCch-------hhccceecccccccccCcccceeeeeeeeecCc
Confidence 99998842 122 22222 344555554 46678888775 469999999999999999999
Q ss_pred CeeeeeCCCCCcCHHHHHHHHHHHHh---cCCCEEEEEccCCCc--cccCCEEEEEeCCeEEEccChHHHHh
Q 037346 502 DIFLLDDPFSPVDDHTGAHLFKFCWV---SSSKTVIYATHQVEF--LPAADLILVIKDGKITQAGKYSDILN 568 (1156)
Q Consensus 502 ~illlDep~s~lD~~~~~~i~~~~~~---~~~~tvi~vtH~~~~--~~~~d~i~~l~~G~i~~~g~~~~l~~ 568 (1156)
.++.+||+|.|||..++-++.+.+.+ .-+.|.++.-|+... ....|.|++|.+|+++++|+.++.+.
T Consensus 280 ~~~~~De~t~GLDSsTal~iik~lr~~a~~~~~t~~vsi~Q~s~~~~~lFD~v~lL~eG~~iy~Gp~d~~~~ 351 (1391)
T KOG0065|consen 280 SILFWDEITRGLDSSTAFQIIKALRQLAHITGATALVSILQPSPEIYDLFDDVILLSEGYQIYQGPRDEVLP 351 (1391)
T ss_pred ceeeeecccccccHHHHHHHHHHHHHHHhhhcceEEEEeccCChHHHHhhhheeeeeccceEEeccHHHHHH
Confidence 99999999999999999888776543 457788888888754 56799999999999999999988763
|
|
| >PRK13537 nodulation ABC transporter NodI; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.7e-38 Score=354.69 Aligned_cols=200 Identities=25% Similarity=0.405 Sum_probs=171.4
Q ss_pred ccEEEeeeEEEeCCCCCCCccccceEEeeCCeEEEEEcCCCCChHHHHHHHhCCCCCCCcEEEEcC------------eE
Q 037346 356 TAIEIIDGSFSWDFSSPNPTLRNINLKVFHGMRVAVCGTVGSGKSSCLSCILGGVPKESGIIRLCG------------TK 423 (1156)
Q Consensus 356 ~~i~~~~~~f~~~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKSTll~~i~g~~~~~~G~i~~~g------------~~ 423 (1156)
..++++|++++|+ +..+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++| ++
T Consensus 6 ~~i~i~~l~k~~~---~~~~l~~vsl~i~~Gei~gllGpNGaGKSTLl~~l~Gl~~p~~G~v~i~G~~~~~~~~~~~~~i 82 (306)
T PRK13537 6 APIDFRNVEKRYG---DKLVVDGLSFHVQRGECFGLLGPNGAGKTTTLRMLLGLTHPDAGSISLCGEPVPSRARHARQRV 82 (306)
T ss_pred ceEEEEeEEEEEC---CeEEEecceEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEecccchHHHHhcE
Confidence 4699999999996 35799999999999999999999999999999999999999999999987 37
Q ss_pred EEEecCCcCCC-ccHHHHhhcCCC---CC----HHHHHHHHHHhCCchhhhhCCCCCccccccCCCCCCHHHHHHHHHHH
Q 037346 424 AYVAQSPWIQS-GKIEENILFGKE---MD----RERYERVLEACSLKKDLEVLPFGDQTIIGERGINLSGGQKQRIQIAR 495 (1156)
Q Consensus 424 ~~v~Q~~~~~~-~ti~eni~~~~~---~~----~~~~~~~~~~~~l~~~~~~~~~g~~t~v~~~g~~LSgGqkqRi~lAr 495 (1156)
||+||++.++. .|++||+.|... .+ .++.+++++.+++.+..+ ....+||||||||++|||
T Consensus 83 g~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-----------~~~~~LS~G~~qrl~la~ 151 (306)
T PRK13537 83 GVVPQFDNLDPDFTVRENLLVFGRYFGLSAAAARALVPPLLEFAKLENKAD-----------AKVGELSGGMKRRLTLAR 151 (306)
T ss_pred EEEeccCcCCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchHhc-----------CchhhCCHHHHHHHHHHH
Confidence 99999998875 699999985221 12 234456667776654332 334689999999999999
Q ss_pred hhccCCCeeeeeCCCCCcCHHHHHHHHHHHHh--cCCCEEEEEccCCCcccc-CCEEEEEeCCeEEEccChHHHHhc
Q 037346 496 PLYQDADIFLLDDPFSPVDDHTGAHLFKFCWV--SSSKTVIYATHQVEFLPA-ADLILVIKDGKITQAGKYSDILNS 569 (1156)
Q Consensus 496 al~~~~~illlDep~s~lD~~~~~~i~~~~~~--~~~~tvi~vtH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~~~ 569 (1156)
||+++|++++|||||++||+.+++.+.+.+.. .+|+|+|++||+++.+.. ||+|++|++|++++.|+++++.+.
T Consensus 152 aL~~~P~lllLDEPt~gLD~~~~~~l~~~l~~l~~~g~till~sH~l~e~~~~~d~i~il~~G~i~~~g~~~~l~~~ 228 (306)
T PRK13537 152 ALVNDPDVLVLDEPTTGLDPQARHLMWERLRSLLARGKTILLTTHFMEEAERLCDRLCVIEEGRKIAEGAPHALIES 228 (306)
T ss_pred HHhCCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEECCHHHHHhc
Confidence 99999999999999999999999998886644 358999999999999864 999999999999999999988643
|
|
| >PRK13651 cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.6e-38 Score=353.84 Aligned_cols=203 Identities=24% Similarity=0.373 Sum_probs=171.3
Q ss_pred cEEEeeeEEEeCCCC--CCCccccceEEeeCCeEEEEEcCCCCChHHHHHHHhCCCCCCCcEEEEcC-------------
Q 037346 357 AIEIIDGSFSWDFSS--PNPTLRNINLKVFHGMRVAVCGTVGSGKSSCLSCILGGVPKESGIIRLCG------------- 421 (1156)
Q Consensus 357 ~i~~~~~~f~~~~~~--~~~~l~~i~l~i~~g~~~~ivG~~GsGKSTll~~i~g~~~~~~G~i~~~g------------- 421 (1156)
.|+++|++++|+... ..++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|
T Consensus 2 ~i~~~~l~~~y~~~~~~~~~~l~~vsl~i~~Ge~v~iiG~nGsGKSTLl~~L~Gl~~p~~G~i~~~g~~~~~~~~~~~~~ 81 (305)
T PRK13651 2 QIKVKNIVKIFNKKLPTELKALDNVSVEINQGEFIAIIGQTGSGKTTFIEHLNALLLPDTGTIEWIFKDEKNKKKTKEKE 81 (305)
T ss_pred EEEEEEEEEEECCCCCccccceeeeEEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEEeceeccccccccccc
Confidence 378999999996421 13699999999999999999999999999999999999999999999864
Q ss_pred ------------------------eEEEEecCC--cCCCccHHHHhhcCCC---CC----HHHHHHHHHHhCCchhhhhC
Q 037346 422 ------------------------TKAYVAQSP--WIQSGKIEENILFGKE---MD----RERYERVLEACSLKKDLEVL 468 (1156)
Q Consensus 422 ------------------------~~~~v~Q~~--~~~~~ti~eni~~~~~---~~----~~~~~~~~~~~~l~~~~~~~ 468 (1156)
.++||+|+| .++..||+|||.|+.. .+ .++..++++.++|..+.
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~ig~v~Q~~~~~l~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~--- 158 (305)
T PRK13651 82 KVLEKLVIQKTRFKKIKKIKEIRRRVGVVFQFAEYQLFEQTIEKDIIFGPVSMGVSKEEAKKRAAKYIELVGLDESY--- 158 (305)
T ss_pred ccccccccccccccccchHHHHHhceEEEeeCcccccccccHHHHHHhhHHHcCCCHHHHHHHHHHHHHHcCCChhh---
Confidence 258999987 4677899999998742 22 24456677777775321
Q ss_pred CCCCccccccCCCCCCHHHHHHHHHHHhhccCCCeeeeeCCCCCcCHHHHHHHHHHHHh--cCCCEEEEEccCCCccc-c
Q 037346 469 PFGDQTIIGERGINLSGGQKQRIQIARPLYQDADIFLLDDPFSPVDDHTGAHLFKFCWV--SSSKTVIYATHQVEFLP-A 545 (1156)
Q Consensus 469 ~~g~~t~v~~~g~~LSgGqkqRi~lAral~~~~~illlDep~s~lD~~~~~~i~~~~~~--~~~~tvi~vtH~~~~~~-~ 545 (1156)
.++...+||||||||++|||||+.+|+++||||||++||+.....+.+.+.. ..|+|+|+|||+++.+. .
T Consensus 159 -------~~~~~~~LSgGqkqrvalA~aL~~~P~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~g~tiiivtHd~~~~~~~ 231 (305)
T PRK13651 159 -------LQRSPFELSGGQKRRVALAGILAMEPDFLVFDEPTAGLDPQGVKEILEIFDNLNKQGKTIILVTHDLDNVLEW 231 (305)
T ss_pred -------hhCChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeeCHHHHHHh
Confidence 1345578999999999999999999999999999999999999988876643 45899999999999875 6
Q ss_pred CCEEEEEeCCeEEEccChHHHHhc
Q 037346 546 ADLILVIKDGKITQAGKYSDILNS 569 (1156)
Q Consensus 546 ~d~i~~l~~G~i~~~g~~~~l~~~ 569 (1156)
||+|++|++|++++.|+++++...
T Consensus 232 adrv~vl~~G~i~~~g~~~~~~~~ 255 (305)
T PRK13651 232 TKRTIFFKDGKIIKDGDTYDILSD 255 (305)
T ss_pred CCEEEEEECCEEEEECCHHHHhcC
Confidence 999999999999999999987653
|
|
| >cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota | Back alignment and domain information |
|---|
Probab=100.00 E-value=5e-38 Score=336.49 Aligned_cols=187 Identities=31% Similarity=0.470 Sum_probs=161.4
Q ss_pred EEeeeEEEeCCCCCCCccccceEEeeCCeEEEEEcCCCCChHHHHHHHhCCCCCCCcEEEEcC----------eEEEEec
Q 037346 359 EIIDGSFSWDFSSPNPTLRNINLKVFHGMRVAVCGTVGSGKSSCLSCILGGVPKESGIIRLCG----------TKAYVAQ 428 (1156)
Q Consensus 359 ~~~~~~f~~~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKSTll~~i~g~~~~~~G~i~~~g----------~~~~v~Q 428 (1156)
+++|++++|+. .+++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++| .++|++|
T Consensus 1 ~~~~l~~~~~~--~~~~l~~v~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~i~~~~q 78 (205)
T cd03226 1 RIENISFSYKK--GTEILDDLSLDLYAGEIIALTGKNGAGKTTLAKILAGLIKESSGSILLNGKPIKAKERRKSIGYVMQ 78 (205)
T ss_pred CcccEEEEeCC--cCceeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEhhhHHhhcceEEEec
Confidence 36799999962 15799999999999999999999999999999999999999999999988 3799999
Q ss_pred CC--cCCCccHHHHhhcCCC---CCHHHHHHHHHHhCCchhhhhCCCCCccccccCCCCCCHHHHHHHHHHHhhccCCCe
Q 037346 429 SP--WIQSGKIEENILFGKE---MDRERYERVLEACSLKKDLEVLPFGDQTIIGERGINLSGGQKQRIQIARPLYQDADI 503 (1156)
Q Consensus 429 ~~--~~~~~ti~eni~~~~~---~~~~~~~~~~~~~~l~~~~~~~~~g~~t~v~~~g~~LSgGqkqRi~lAral~~~~~i 503 (1156)
+| .++..|++||+.++.. .+.++..++++.+++.+..+. ...+||||||||++||||++.+|++
T Consensus 79 ~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-----------~~~~LS~G~~qrv~laral~~~p~l 147 (205)
T cd03226 79 DVDYQLFTDSVREELLLGLKELDAGNEQAETVLKDLDLYALKER-----------HPLSLSGGQKQRLAIAAALLSGKDL 147 (205)
T ss_pred ChhhhhhhccHHHHHhhhhhhcCccHHHHHHHHHHcCCchhcCC-----------CchhCCHHHHHHHHHHHHHHhCCCE
Confidence 98 4567899999988642 233567788888888655443 3358999999999999999999999
Q ss_pred eeeeCCCCCcCHHHHHHHHHHHHh--cCCCEEEEEccCCCccc-cCCEEEEEeCCeEE
Q 037346 504 FLLDDPFSPVDDHTGAHLFKFCWV--SSSKTVIYATHQVEFLP-AADLILVIKDGKIT 558 (1156)
Q Consensus 504 lllDep~s~lD~~~~~~i~~~~~~--~~~~tvi~vtH~~~~~~-~~d~i~~l~~G~i~ 558 (1156)
+||||||++||+.+++.+.+.+.. .+|+|+|++||+++.+. .||++++|++|+++
T Consensus 148 lllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~iv 205 (205)
T cd03226 148 LIFDEPTSGLDYKNMERVGELIRELAAQGKAVIVITHDYEFLAKVCDRVLLLANGAIV 205 (205)
T ss_pred EEEeCCCccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEEC
Confidence 999999999999999988776643 35889999999999886 59999999999874
|
The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems. |
| >PRK13646 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.5e-38 Score=351.98 Aligned_cols=202 Identities=23% Similarity=0.420 Sum_probs=170.5
Q ss_pred cEEEeeeEEEeCCCC--CCCccccceEEeeCCeEEEEEcCCCCChHHHHHHHhCCCCCCCcEEEEcC-------------
Q 037346 357 AIEIIDGSFSWDFSS--PNPTLRNINLKVFHGMRVAVCGTVGSGKSSCLSCILGGVPKESGIIRLCG------------- 421 (1156)
Q Consensus 357 ~i~~~~~~f~~~~~~--~~~~l~~i~l~i~~g~~~~ivG~~GsGKSTll~~i~g~~~~~~G~i~~~g------------- 421 (1156)
.++++|++|+|+... +.++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|
T Consensus 2 ~l~~~~l~~~y~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~L~Gl~~p~~G~i~~~g~~i~~~~~~~~~~ 81 (286)
T PRK13646 2 TIRFDNVSYTYQKGTPYEHQAIHDVNTEFEQGKYYAIVGQTGSGKSTLIQNINALLKPTTGTVTVDDITITHKTKDKYIR 81 (286)
T ss_pred EEEEEEEEEEECCCCccccCceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEECccccccchHH
Confidence 378999999996322 24699999999999999999999999999999999999999999999987
Q ss_pred ----eEEEEecCC--cCCCccHHHHhhcCCC---CCH----HHHHHHHHHhCCchhhhhCCCCCccccccCCCCCCHHHH
Q 037346 422 ----TKAYVAQSP--WIQSGKIEENILFGKE---MDR----ERYERVLEACSLKKDLEVLPFGDQTIIGERGINLSGGQK 488 (1156)
Q Consensus 422 ----~~~~v~Q~~--~~~~~ti~eni~~~~~---~~~----~~~~~~~~~~~l~~~~~~~~~g~~t~v~~~g~~LSgGqk 488 (1156)
.++||+|+| .++..|+.|||.|+.. .+. ++..++++.++|..+. ....+.+||||||
T Consensus 82 ~~~~~ig~v~q~~~~~l~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~----------~~~~~~~LSgGq~ 151 (286)
T PRK13646 82 PVRKRIGMVFQFPESQLFEDTVEREIIFGPKNFKMNLDEVKNYAHRLLMDLGFSRDV----------MSQSPFQMSGGQM 151 (286)
T ss_pred HHHhheEEEecChHhccchhhHHHHHHhhHHHcCCCHHHHHHHHHHHHHHcCCChhh----------hhCCcccCCHHHH
Confidence 258999998 5777899999998632 222 3345566666664221 1345678999999
Q ss_pred HHHHHHHhhccCCCeeeeeCCCCCcCHHHHHHHHHHHHh---cCCCEEEEEccCCCccc-cCCEEEEEeCCeEEEccChH
Q 037346 489 QRIQIARPLYQDADIFLLDDPFSPVDDHTGAHLFKFCWV---SSSKTVIYATHQVEFLP-AADLILVIKDGKITQAGKYS 564 (1156)
Q Consensus 489 qRi~lAral~~~~~illlDep~s~lD~~~~~~i~~~~~~---~~~~tvi~vtH~~~~~~-~~d~i~~l~~G~i~~~g~~~ 564 (1156)
||++|||||+.+|+++||||||++||+.++.++.+.+.. ..|+|+|++||+++.+. .||+|++|++|++++.|+++
T Consensus 152 qrv~laraL~~~p~illlDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvl~vtH~~~~~~~~~dri~~l~~G~i~~~g~~~ 231 (286)
T PRK13646 152 RKIAIVSILAMNPDIIVLDEPTAGLDPQSKRQVMRLLKSLQTDENKTIILVSHDMNEVARYADEVIVMKEGSIVSQTSPK 231 (286)
T ss_pred HHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEECCHH
Confidence 999999999999999999999999999999998876643 24899999999999875 69999999999999999998
Q ss_pred HHHh
Q 037346 565 DILN 568 (1156)
Q Consensus 565 ~l~~ 568 (1156)
++.+
T Consensus 232 ~~~~ 235 (286)
T PRK13646 232 ELFK 235 (286)
T ss_pred HHHh
Confidence 8765
|
|
| >cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.2e-38 Score=340.27 Aligned_cols=195 Identities=32% Similarity=0.427 Sum_probs=165.2
Q ss_pred EEEeeeEEEeCCCC-CCCccccceEEeeCCeEEEEEcCCCCChHHHHHHHhCCCCCCCcEEEEcC--------eEEEEec
Q 037346 358 IEIIDGSFSWDFSS-PNPTLRNINLKVFHGMRVAVCGTVGSGKSSCLSCILGGVPKESGIIRLCG--------TKAYVAQ 428 (1156)
Q Consensus 358 i~~~~~~f~~~~~~-~~~~l~~i~l~i~~g~~~~ivG~~GsGKSTll~~i~g~~~~~~G~i~~~g--------~~~~v~Q 428 (1156)
++++|+++.|+... .+++|+|+||+|++|++++|+||||||||||+++|+|+++|++|+|.++| .++|++|
T Consensus 1 l~~~~l~~~~~~~~~~~~il~~vs~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~i~~v~q 80 (220)
T cd03293 1 LEVRNVSKTYGGGGGAVTALEDISLSVEEGEFVALVGPSGCGKSTLLRIIAGLERPTSGEVLVDGEPVTGPGPDRGYVFQ 80 (220)
T ss_pred CeEEEEEEEcCCCCcceEEEeceeEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECccccCcEEEEec
Confidence 46899999996311 15799999999999999999999999999999999999999999999988 3799999
Q ss_pred CCcCCC-ccHHHHhhcCCC---CC----HHHHHHHHHHhCCchhhhhCCCCCccccccCCCCCCHHHHHHHHHHHhhccC
Q 037346 429 SPWIQS-GKIEENILFGKE---MD----RERYERVLEACSLKKDLEVLPFGDQTIIGERGINLSGGQKQRIQIARPLYQD 500 (1156)
Q Consensus 429 ~~~~~~-~ti~eni~~~~~---~~----~~~~~~~~~~~~l~~~~~~~~~g~~t~v~~~g~~LSgGqkqRi~lAral~~~ 500 (1156)
+|.++. .|++||+.++.. .. .++.++.++.+++.+.+. ....+||||||||++||||++.+
T Consensus 81 ~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-----------~~~~~LSgG~~qrl~la~al~~~ 149 (220)
T cd03293 81 QDALLPWLTVLDNVALGLELQGVPKAEARERAEELLELVGLSGFEN-----------AYPHQLSGGMRQRVALARALAVD 149 (220)
T ss_pred ccccccCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhhh-----------CCcccCCHHHHHHHHHHHHHHcC
Confidence 998876 699999987532 11 234566777777765443 33468999999999999999999
Q ss_pred CCeeeeeCCCCCcCHHHHHHHHHHHHh---cCCCEEEEEccCCCccc-cCCEEEEEe--CCeEEEccCh
Q 037346 501 ADIFLLDDPFSPVDDHTGAHLFKFCWV---SSSKTVIYATHQVEFLP-AADLILVIK--DGKITQAGKY 563 (1156)
Q Consensus 501 ~~illlDep~s~lD~~~~~~i~~~~~~---~~~~tvi~vtH~~~~~~-~~d~i~~l~--~G~i~~~g~~ 563 (1156)
|+++||||||++||+.+++.+++.+.. ..++|+|++||+++.+. .||++++|+ +|++++.++.
T Consensus 150 p~lllLDEPt~~LD~~~~~~~~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~~~G~i~~~~~~ 218 (220)
T cd03293 150 PDVLLLDEPFSALDALTREQLQEELLDIWRETGKTVLLVTHDIDEAVFLADRVVVLSARPGRIVAEVEV 218 (220)
T ss_pred CCEEEECCCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEecCHHHHHHhCCEEEEEECCCCEEEEEEEe
Confidence 999999999999999999999887643 24789999999999875 599999999 7999987764
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.9e-38 Score=340.32 Aligned_cols=188 Identities=27% Similarity=0.417 Sum_probs=160.7
Q ss_pred EEEeeeEEEeCCCCCCCccccceEEeeCCeEEEEEcCCCCChHHHHHHHhCCCCCCCcEEEEcCe---------------
Q 037346 358 IEIIDGSFSWDFSSPNPTLRNINLKVFHGMRVAVCGTVGSGKSSCLSCILGGVPKESGIIRLCGT--------------- 422 (1156)
Q Consensus 358 i~~~~~~f~~~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKSTll~~i~g~~~~~~G~i~~~g~--------------- 422 (1156)
++++|++++|+.. .+++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.
T Consensus 2 l~~~~l~~~~~~~-~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~ 80 (216)
T TIGR00960 2 IRFEQVSKAYPGG-HQPALDNLNFHITKGEMVFLVGHSGAGKSTFLKLILGIEKPTRGKIRFNGQDLTRLRGREIPFLRR 80 (216)
T ss_pred eEEEEEEEEecCC-CeeEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEehhhcChhHHHHHHH
Confidence 7899999999632 246999999999999999999999999999999999999999999999873
Q ss_pred -EEEEecCCcCCC-ccHHHHhhcCCC---C----CHHHHHHHHHHhCCchhhhhCCCCCccccccCCCCCCHHHHHHHHH
Q 037346 423 -KAYVAQSPWIQS-GKIEENILFGKE---M----DRERYERVLEACSLKKDLEVLPFGDQTIIGERGINLSGGQKQRIQI 493 (1156)
Q Consensus 423 -~~~v~Q~~~~~~-~ti~eni~~~~~---~----~~~~~~~~~~~~~l~~~~~~~~~g~~t~v~~~g~~LSgGqkqRi~l 493 (1156)
++|++|+|.++. .|++||+.++.. . .+++..++++.+++.+..+. ...+||||||||++|
T Consensus 81 ~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-----------~~~~LSgG~~qrv~l 149 (216)
T TIGR00960 81 HIGMVFQDHRLLSDRTVYDNVAFPLRIIGVPPRDANERVSAALEKVGLEGKAHA-----------LPMQLSGGEQQRVAI 149 (216)
T ss_pred hceEEecCccccccccHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhhhhC-----------ChhhCCHHHHHHHHH
Confidence 689999998876 599999987521 1 13456677777777654433 346899999999999
Q ss_pred HHhhccCCCeeeeeCCCCCcCHHHHHHHHHHHHh--cCCCEEEEEccCCCccc-cCCEEEEEeCCeE
Q 037346 494 ARPLYQDADIFLLDDPFSPVDDHTGAHLFKFCWV--SSSKTVIYATHQVEFLP-AADLILVIKDGKI 557 (1156)
Q Consensus 494 Aral~~~~~illlDep~s~lD~~~~~~i~~~~~~--~~~~tvi~vtH~~~~~~-~~d~i~~l~~G~i 557 (1156)
||||+.+|+++||||||++||+.+++.+.+.+.. .+++|+|++||+++.+. .||++++|++|++
T Consensus 150 aral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~vsH~~~~~~~~~d~i~~l~~G~i 216 (216)
T TIGR00960 150 ARAIVHKPPLLLADEPTGNLDPELSRDIMRLFEEFNRRGTTVLVATHDINLVETYRHRTLTLSRGRL 216 (216)
T ss_pred HHHHhcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEeCCcC
Confidence 9999999999999999999999999998876644 34789999999999986 5999999999974
|
|
| >PRK11153 metN DL-methionine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6e-38 Score=359.87 Aligned_cols=201 Identities=26% Similarity=0.369 Sum_probs=171.9
Q ss_pred EEEeeeEEEeCCCC-CCCccccceEEeeCCeEEEEEcCCCCChHHHHHHHhCCCCCCCcEEEEcC---------------
Q 037346 358 IEIIDGSFSWDFSS-PNPTLRNINLKVFHGMRVAVCGTVGSGKSSCLSCILGGVPKESGIIRLCG--------------- 421 (1156)
Q Consensus 358 i~~~~~~f~~~~~~-~~~~l~~i~l~i~~g~~~~ivG~~GsGKSTll~~i~g~~~~~~G~i~~~g--------------- 421 (1156)
|+++|++++|+... ++++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|
T Consensus 2 i~i~~l~~~y~~~~~~~~il~~vsl~i~~Gei~~iiG~nGsGKSTLlk~L~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~~ 81 (343)
T PRK11153 2 IELKNISKVFPQGGRTIHALNNVSLHIPAGEIFGVIGASGAGKSTLIRCINLLERPTSGRVLVDGQDLTALSEKELRKAR 81 (343)
T ss_pred EEEEeEEEEeCCCCCceEEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCcCCHHHHHHHh
Confidence 78999999996311 35799999999999999999999999999999999999999999999987
Q ss_pred -eEEEEecCCcCCC-ccHHHHhhcCCC---CC----HHHHHHHHHHhCCchhhhhCCCCCccccccCCCCCCHHHHHHHH
Q 037346 422 -TKAYVAQSPWIQS-GKIEENILFGKE---MD----RERYERVLEACSLKKDLEVLPFGDQTIIGERGINLSGGQKQRIQ 492 (1156)
Q Consensus 422 -~~~~v~Q~~~~~~-~ti~eni~~~~~---~~----~~~~~~~~~~~~l~~~~~~~~~g~~t~v~~~g~~LSgGqkqRi~ 492 (1156)
+++|++|++.++. .|++||+.++.. .+ .++..+.++.+++.+..+ ....+||||||||++
T Consensus 82 ~~ig~v~q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~-----------~~~~~LSgGq~qRv~ 150 (343)
T PRK11153 82 RQIGMIFQHFNLLSSRTVFDNVALPLELAGTPKAEIKARVTELLELVGLSDKAD-----------RYPAQLSGGQKQRVA 150 (343)
T ss_pred cCEEEEeCCCccCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhh-----------CChhhCCHHHHHHHH
Confidence 2799999998876 699999987532 22 234556677777654433 345689999999999
Q ss_pred HHHhhccCCCeeeeeCCCCCcCHHHHHHHHHHHHh---cCCCEEEEEccCCCcccc-CCEEEEEeCCeEEEccChHHHHh
Q 037346 493 IARPLYQDADIFLLDDPFSPVDDHTGAHLFKFCWV---SSSKTVIYATHQVEFLPA-ADLILVIKDGKITQAGKYSDILN 568 (1156)
Q Consensus 493 lAral~~~~~illlDep~s~lD~~~~~~i~~~~~~---~~~~tvi~vtH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~~ 568 (1156)
|||||+.+|+++||||||++||+.+++.+.+.+.. ..|+|+|++||+++.+.. ||+|++|++|++++.|+++++..
T Consensus 151 lAraL~~~p~iLlLDEPts~LD~~~~~~l~~~L~~l~~~~g~tiilvtH~~~~i~~~~d~v~~l~~G~i~~~g~~~~~~~ 230 (343)
T PRK11153 151 IARALASNPKVLLCDEATSALDPATTRSILELLKDINRELGLTIVLITHEMDVVKRICDRVAVIDAGRLVEQGTVSEVFS 230 (343)
T ss_pred HHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHh
Confidence 99999999999999999999999999998876644 248899999999998864 99999999999999999999875
Q ss_pred c
Q 037346 569 S 569 (1156)
Q Consensus 569 ~ 569 (1156)
.
T Consensus 231 ~ 231 (343)
T PRK11153 231 H 231 (343)
T ss_pred C
Confidence 4
|
|
| >PRK11607 potG putrescine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8e-38 Score=360.82 Aligned_cols=201 Identities=26% Similarity=0.377 Sum_probs=173.9
Q ss_pred ccEEEeeeEEEeCCCCCCCccccceEEeeCCeEEEEEcCCCCChHHHHHHHhCCCCCCCcEEEEcCe-----------EE
Q 037346 356 TAIEIIDGSFSWDFSSPNPTLRNINLKVFHGMRVAVCGTVGSGKSSCLSCILGGVPKESGIIRLCGT-----------KA 424 (1156)
Q Consensus 356 ~~i~~~~~~f~~~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKSTll~~i~g~~~~~~G~i~~~g~-----------~~ 424 (1156)
..++++|++++|+ +.++|+|+||++++||+++|+||||||||||+++|+|+.+|++|+|.++|. ++
T Consensus 18 ~~l~l~~v~~~~~---~~~~l~~vsl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~i~g~~i~~~~~~~r~ig 94 (377)
T PRK11607 18 PLLEIRNLTKSFD---GQHAVDDVSLTIYKGEIFALLGASGCGKSTLLRMLAGFEQPTAGQIMLDGVDLSHVPPYQRPIN 94 (377)
T ss_pred ceEEEEeEEEEEC---CEEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCCCCHHHCCEE
Confidence 4699999999996 346999999999999999999999999999999999999999999999984 69
Q ss_pred EEecCCcCCCc-cHHHHhhcCCC---CC----HHHHHHHHHHhCCchhhhhCCCCCccccccCCCCCCHHHHHHHHHHHh
Q 037346 425 YVAQSPWIQSG-KIEENILFGKE---MD----RERYERVLEACSLKKDLEVLPFGDQTIIGERGINLSGGQKQRIQIARP 496 (1156)
Q Consensus 425 ~v~Q~~~~~~~-ti~eni~~~~~---~~----~~~~~~~~~~~~l~~~~~~~~~g~~t~v~~~g~~LSgGqkqRi~lAra 496 (1156)
||+|++.+|.. ||.|||.|+.. .+ .++..++++.+++.+..+ ....+|||||||||+||||
T Consensus 95 ~vfQ~~~lfp~ltv~eNi~~~l~~~~~~~~~~~~~v~~~l~~l~L~~~~~-----------~~~~~LSgGq~QRVaLARA 163 (377)
T PRK11607 95 MMFQSYALFPHMTVEQNIAFGLKQDKLPKAEIASRVNEMLGLVHMQEFAK-----------RKPHQLSGGQRQRVALARS 163 (377)
T ss_pred EEeCCCccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhc-----------CChhhCCHHHHHHHHHHHH
Confidence 99999998865 99999998742 22 234566777777765443 3446899999999999999
Q ss_pred hccCCCeeeeeCCCCCcCHHHHHHHHHHHHh---cCCCEEEEEccCCCccc-cCCEEEEEeCCeEEEccChHHHHhcC
Q 037346 497 LYQDADIFLLDDPFSPVDDHTGAHLFKFCWV---SSSKTVIYATHQVEFLP-AADLILVIKDGKITQAGKYSDILNSG 570 (1156)
Q Consensus 497 l~~~~~illlDep~s~lD~~~~~~i~~~~~~---~~~~tvi~vtH~~~~~~-~~d~i~~l~~G~i~~~g~~~~l~~~~ 570 (1156)
|+.+|++||||||||+||+..++.+.+.+.. ..|.|+|+|||+++.+. .||+|++|++|++++.|+++++....
T Consensus 164 L~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~~ea~~laDri~vl~~G~i~~~g~~~~~~~~p 241 (377)
T PRK11607 164 LAKRPKLLLLDEPMGALDKKLRDRMQLEVVDILERVGVTCVMVTHDQEEAMTMAGRIAIMNRGKFVQIGEPEEIYEHP 241 (377)
T ss_pred HhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEEeCCEEEEEcCHHHHHhCC
Confidence 9999999999999999999999888765432 35899999999999864 69999999999999999999988653
|
|
| >cd03290 ABCC_SUR1_N The SUR domain 1 | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-37 Score=336.56 Aligned_cols=196 Identities=46% Similarity=0.829 Sum_probs=176.0
Q ss_pred EEeeeEEEeCCCCCCCccccceEEeeCCeEEEEEcCCCCChHHHHHHHhCCCCCCCcEEEEcC-----------------
Q 037346 359 EIIDGSFSWDFSSPNPTLRNINLKVFHGMRVAVCGTVGSGKSSCLSCILGGVPKESGIIRLCG----------------- 421 (1156)
Q Consensus 359 ~~~~~~f~~~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKSTll~~i~g~~~~~~G~i~~~g----------------- 421 (1156)
.+.|++|.|+. +.++++|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|
T Consensus 2 ~~~~~~~~~~~--~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~ 79 (218)
T cd03290 2 QVTNGYFSWGS--GLATLSNINIRIPTGQLTMIVGQVGCGKSSLLLAILGEMQTLEGKVHWSNKNESEPSFEATRSRNRY 79 (218)
T ss_pred eeeeeEEecCC--CCcceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCeEEECCcccccccccccchhhcc
Confidence 57799999973 35799999999999999999999999999999999999999999999976
Q ss_pred eEEEEecCCcCCCccHHHHhhcCCCCCHHHHHHHHHHhCCchhhhhCCCCCccccccCCCCCCHHHHHHHHHHHhhccCC
Q 037346 422 TKAYVAQSPWIQSGKIEENILFGKEMDRERYERVLEACSLKKDLEVLPFGDQTIIGERGINLSGGQKQRIQIARPLYQDA 501 (1156)
Q Consensus 422 ~~~~v~Q~~~~~~~ti~eni~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~t~v~~~g~~LSgGqkqRi~lAral~~~~ 501 (1156)
.++|++|+|.+++.|++||+.++...+.++.+++++.+++.+.+..+|.|+++.++....+||||||||++||||++.+|
T Consensus 80 ~i~~~~q~~~~~~~t~~~nl~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LS~G~~qrv~laral~~~p 159 (218)
T cd03290 80 SVAYAAQKPWLLNATVEENITFGSPFNKQRYKAVTDACSLQPDIDLLPFGDQTEIGERGINLSGGQRQRICVARALYQNT 159 (218)
T ss_pred eEEEEcCCCccccccHHHHHhhcCcCCHHHHHHHHHHhCcHHHHHhCcCccccCcccCCCcCCHHHHHHHHHHHHHhhCC
Confidence 26899999999988999999987666666677888999998888888999999999999999999999999999999999
Q ss_pred CeeeeeCCCCCcCHHHHHHHHHH-HH---hcCCCEEEEEccCCCccccCCEEEEEeCCe
Q 037346 502 DIFLLDDPFSPVDDHTGAHLFKF-CW---VSSSKTVIYATHQVEFLPAADLILVIKDGK 556 (1156)
Q Consensus 502 ~illlDep~s~lD~~~~~~i~~~-~~---~~~~~tvi~vtH~~~~~~~~d~i~~l~~G~ 556 (1156)
+++||||||++||+.+.+.+.+. ++ ...+.|+|++||+++.+..||++++|++|.
T Consensus 160 ~illlDEPt~~LD~~~~~~l~~~~ll~~~~~~~~tii~~sH~~~~~~~~d~i~~l~~G~ 218 (218)
T cd03290 160 NIVFLDDPFSALDIHLSDHLMQEGILKFLQDDKRTLVLVTHKLQYLPHADWIIAMKDGS 218 (218)
T ss_pred CEEEEeCCccccCHHHHHHHHHHHHHHHHhcCCCEEEEEeCChHHHhhCCEEEEecCCC
Confidence 99999999999999999888762 22 235789999999999888899999999874
|
The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity. |
| >cd03248 ABCC_TAP TAP, the Transporter Associated with Antigen Processing; TAP is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-37 Score=338.72 Aligned_cols=203 Identities=26% Similarity=0.430 Sum_probs=175.8
Q ss_pred CccEEEeeeEEEeCCCCCCCccccceEEeeCCeEEEEEcCCCCChHHHHHHHhCCCCCCCcEEEEcCe------------
Q 037346 355 DTAIEIIDGSFSWDFSSPNPTLRNINLKVFHGMRVAVCGTVGSGKSSCLSCILGGVPKESGIIRLCGT------------ 422 (1156)
Q Consensus 355 ~~~i~~~~~~f~~~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKSTll~~i~g~~~~~~G~i~~~g~------------ 422 (1156)
.+.++++|++++|+...+.++|+|+||+|++|++++|+||||||||||+++|+|+++|++|+|.++|.
T Consensus 9 ~~~l~~~~l~~~~~~~~~~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~ 88 (226)
T cd03248 9 KGIVKFQNVTFAYPTRPDTLVLQDVSFTLHPGEVTALVGPSGSGKSTVVALLENFYQPQGGQVLLDGKPISQYEHKYLHS 88 (226)
T ss_pred CceEEEEEEEEEeCCCCCCccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCcEEEECCCchHHcCHHHHHh
Confidence 45799999999997432347999999999999999999999999999999999999999999999872
Q ss_pred -EEEEecCCcCCCccHHHHhhcCCC-CCHHHHHHHHHHhCCchhhhhCCCCCccccccCCCCCCHHHHHHHHHHHhhccC
Q 037346 423 -KAYVAQSPWIQSGKIEENILFGKE-MDRERYERVLEACSLKKDLEVLPFGDQTIIGERGINLSGGQKQRIQIARPLYQD 500 (1156)
Q Consensus 423 -~~~v~Q~~~~~~~ti~eni~~~~~-~~~~~~~~~~~~~~l~~~~~~~~~g~~t~v~~~g~~LSgGqkqRi~lAral~~~ 500 (1156)
++|++|++.++..|++||+.++.. .....+.+..+...+...++.++.|.++.+++++.+||||||||++||||++++
T Consensus 89 ~i~~~~q~~~l~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~gl~~~~~~~~~~LSgG~~qrv~laral~~~ 168 (226)
T cd03248 89 KVSLVGQEPVLFARSLQDNIAYGLQSCSFECVKEAAQKAHAHSFISELASGYDTEVGEKGSQLSGGQKQRVAIARALIRN 168 (226)
T ss_pred hEEEEecccHHHhhhHHHHhccccCCCCHHHHHHHHHHcCcHHHHHhccccccchhhcCCCcCCHHHHHHHHHHHHHhcC
Confidence 799999999988999999988653 222233344445566777888888888888999999999999999999999999
Q ss_pred CCeeeeeCCCCCcCHHHHHHHHHHHHh-cCCCEEEEEccCCCccccCCEEEEEeCCeE
Q 037346 501 ADIFLLDDPFSPVDDHTGAHLFKFCWV-SSSKTVIYATHQVEFLPAADLILVIKDGKI 557 (1156)
Q Consensus 501 ~~illlDep~s~lD~~~~~~i~~~~~~-~~~~tvi~vtH~~~~~~~~d~i~~l~~G~i 557 (1156)
|+++||||||++||+.+++.+.+.+.. .+++|+|++||+++.+..||+|++|++|++
T Consensus 169 p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~~d~i~~l~~g~i 226 (226)
T cd03248 169 PQVLILDEATSALDAESEQQVQQALYDWPERRTVLVIAHRLSTVERADQILVLDGGRI 226 (226)
T ss_pred CCEEEEeCCcccCCHHHHHHHHHHHHHHcCCCEEEEEECCHHHHHhCCEEEEecCCcC
Confidence 999999999999999999988876644 346899999999999877999999999874
|
Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes. |
| >cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.6e-38 Score=339.99 Aligned_cols=195 Identities=23% Similarity=0.361 Sum_probs=166.5
Q ss_pred EEEeeeEEEeCCCCCCCccccceEEeeCCeEEEEEcCCCCChHHHHHHHhCCCCCCCcEEEEcC------------eEEE
Q 037346 358 IEIIDGSFSWDFSSPNPTLRNINLKVFHGMRVAVCGTVGSGKSSCLSCILGGVPKESGIIRLCG------------TKAY 425 (1156)
Q Consensus 358 i~~~~~~f~~~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKSTll~~i~g~~~~~~G~i~~~g------------~~~~ 425 (1156)
++++|++++|+ ++++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++| .++|
T Consensus 1 i~~~~~~~~~~---~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~i~~ 77 (220)
T cd03265 1 IEVENLVKKYG---DFEAVRGVSFRVRRGEIFGLLGPNGAGKTTTIKMLTTLLKPTSGRATVAGHDVVREPREVRRRIGI 77 (220)
T ss_pred CEEEEEEEEEC---CEEeeeceeEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEecCcChHHHhhcEEE
Confidence 47899999996 35799999999999999999999999999999999999999999999987 3789
Q ss_pred EecCCcCCC-ccHHHHhhcCCC---CC----HHHHHHHHHHhCCchhhhhCCCCCccccccCCCCCCHHHHHHHHHHHhh
Q 037346 426 VAQSPWIQS-GKIEENILFGKE---MD----RERYERVLEACSLKKDLEVLPFGDQTIIGERGINLSGGQKQRIQIARPL 497 (1156)
Q Consensus 426 v~Q~~~~~~-~ti~eni~~~~~---~~----~~~~~~~~~~~~l~~~~~~~~~g~~t~v~~~g~~LSgGqkqRi~lAral 497 (1156)
++|++.++. .|++||+.++.. .+ +++.+++++.+++.+..+ ....+||||||||++||||+
T Consensus 78 ~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-----------~~~~~LS~G~~qr~~la~al 146 (220)
T cd03265 78 VFQDLSVDDELTGWENLYIHARLYGVPGAERRERIDELLDFVGLLEAAD-----------RLVKTYSGGMRRRLEIARSL 146 (220)
T ss_pred ecCCccccccCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHhh-----------CChhhCCHHHHHHHHHHHHH
Confidence 999998776 499999987421 11 235567777777765443 33468999999999999999
Q ss_pred ccCCCeeeeeCCCCCcCHHHHHHHHHHHHh--c-CCCEEEEEccCCCccc-cCCEEEEEeCCeEEEccChHHH
Q 037346 498 YQDADIFLLDDPFSPVDDHTGAHLFKFCWV--S-SSKTVIYATHQVEFLP-AADLILVIKDGKITQAGKYSDI 566 (1156)
Q Consensus 498 ~~~~~illlDep~s~lD~~~~~~i~~~~~~--~-~~~tvi~vtH~~~~~~-~~d~i~~l~~G~i~~~g~~~~l 566 (1156)
+.+|+++||||||++||+.+.+.+.+.+.. . .|+|+|++||+++.+. .||+|++|++|++++.|+++++
T Consensus 147 ~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~~tH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~ 219 (220)
T cd03265 147 VHRPEVLFLDEPTIGLDPQTRAHVWEYIEKLKEEFGMTILLTTHYMEEAEQLCDRVAIIDHGRIIAEGTPEEL 219 (220)
T ss_pred hcCCCEEEEcCCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeCCEEEEeCChHHc
Confidence 999999999999999999999988876643 3 3789999999999886 5999999999999998887653
|
In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK14250 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-37 Score=340.44 Aligned_cols=200 Identities=28% Similarity=0.393 Sum_probs=172.6
Q ss_pred cEEEeeeEEEeCCCCCCCccccceEEeeCCeEEEEEcCCCCChHHHHHHHhCCCCCCCcEEEEcCe-------------E
Q 037346 357 AIEIIDGSFSWDFSSPNPTLRNINLKVFHGMRVAVCGTVGSGKSSCLSCILGGVPKESGIIRLCGT-------------K 423 (1156)
Q Consensus 357 ~i~~~~~~f~~~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKSTll~~i~g~~~~~~G~i~~~g~-------------~ 423 (1156)
.++++|++++|+ ++++|+|+||+|++|++++|+||||||||||+++|+|+++|++|+|.++|. +
T Consensus 3 ~l~~~~l~~~~~---~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~i 79 (241)
T PRK14250 3 EIEFKEVSYSSF---GKEILKDISVKFEGGAIYTIVGPSGAGKSTLIKLINRLIDPTEGSILIDGVDIKTIDVIDLRRKI 79 (241)
T ss_pred eEEEEeEEEEeC---CeeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEhhhcChHHhhhcE
Confidence 488999999996 357999999999999999999999999999999999999999999999873 6
Q ss_pred EEEecCCcCCCccHHHHhhcCCCC---CHHHHHHHHHHhCCchhhhhCCCCCccccccCCCCCCHHHHHHHHHHHhhccC
Q 037346 424 AYVAQSPWIQSGKIEENILFGKEM---DRERYERVLEACSLKKDLEVLPFGDQTIIGERGINLSGGQKQRIQIARPLYQD 500 (1156)
Q Consensus 424 ~~v~Q~~~~~~~ti~eni~~~~~~---~~~~~~~~~~~~~l~~~~~~~~~g~~t~v~~~g~~LSgGqkqRi~lAral~~~ 500 (1156)
+|++|+|.++..|++||+.++... ..++..++++.+++..+. ..+...+||||||||++||||++.+
T Consensus 80 ~~~~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~l~~~~l~~~~----------~~~~~~~LS~G~~qrl~la~al~~~ 149 (241)
T PRK14250 80 GMVFQQPHLFEGTVKDNIEYGPMLKGEKNVDVEYYLSIVGLNKEY----------ATRDVKNLSGGEAQRVSIARTLANN 149 (241)
T ss_pred EEEecCchhchhhHHHHHhcchhhcCcHHHHHHHHHHHcCCCHHH----------hhCCcccCCHHHHHHHHHHHHHhcC
Confidence 899999999888999999876422 234566777777775322 1245678999999999999999999
Q ss_pred CCeeeeeCCCCCcCHHHHHHHHHHHHh--c-CCCEEEEEccCCCccc-cCCEEEEEeCCeEEEccChHHHHhc
Q 037346 501 ADIFLLDDPFSPVDDHTGAHLFKFCWV--S-SSKTVIYATHQVEFLP-AADLILVIKDGKITQAGKYSDILNS 569 (1156)
Q Consensus 501 ~~illlDep~s~lD~~~~~~i~~~~~~--~-~~~tvi~vtH~~~~~~-~~d~i~~l~~G~i~~~g~~~~l~~~ 569 (1156)
|+++||||||++||+.+++.+.+.+.. . .|+|+|++||+++.+. .||+|++|++|++++.|+++++...
T Consensus 150 p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~g~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~ 222 (241)
T PRK14250 150 PEVLLLDEPTSALDPTSTEIIEELIVKLKNKMNLTVIWITHNMEQAKRIGDYTAFLNKGILVEYAKTYDFFTN 222 (241)
T ss_pred CCEEEEeCCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEeccHHHHHHhCCEEEEEeCCEEEEeCCHHHHhcC
Confidence 999999999999999999988776543 2 4899999999999876 5999999999999999999888653
|
|
| >cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.8e-38 Score=338.33 Aligned_cols=197 Identities=23% Similarity=0.412 Sum_probs=167.7
Q ss_pred EEEeeeEEEeCCCCCCCccccceEEeeCCeEEEEEcCCCCChHHHHHHHhCCCCCCCcEEEEcCe------------EEE
Q 037346 358 IEIIDGSFSWDFSSPNPTLRNINLKVFHGMRVAVCGTVGSGKSSCLSCILGGVPKESGIIRLCGT------------KAY 425 (1156)
Q Consensus 358 i~~~~~~f~~~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKSTll~~i~g~~~~~~G~i~~~g~------------~~~ 425 (1156)
++++|+++.|+.. .+++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|. ++|
T Consensus 1 l~~~~l~~~~~~~-~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~i~~ 79 (220)
T cd03263 1 LQIRNLTKTYKKG-TKPAVDDLSLNVYKGEIFGLLGHNGAGKTTTLKMLTGELRPTSGTAYINGYSIRTDRKAARQSLGY 79 (220)
T ss_pred CEEEeeEEEeCCC-CceeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEecccchHHHhhhEEE
Confidence 4689999999631 257999999999999999999999999999999999999999999999873 689
Q ss_pred EecCCcCC-CccHHHHhhcCCC---CC----HHHHHHHHHHhCCchhhhhCCCCCccccccCCCCCCHHHHHHHHHHHhh
Q 037346 426 VAQSPWIQ-SGKIEENILFGKE---MD----RERYERVLEACSLKKDLEVLPFGDQTIIGERGINLSGGQKQRIQIARPL 497 (1156)
Q Consensus 426 v~Q~~~~~-~~ti~eni~~~~~---~~----~~~~~~~~~~~~l~~~~~~~~~g~~t~v~~~g~~LSgGqkqRi~lAral 497 (1156)
++|++.++ ..|++||+.+... .. .++++++++.+++.+..+ ....+||||||||++||||+
T Consensus 80 v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-----------~~~~~LS~G~~qrv~la~al 148 (220)
T cd03263 80 CPQFDALFDELTVREHLRFYARLKGLPKSEIKEEVELLLRVLGLTDKAN-----------KRARTLSGGMKRKLSLAIAL 148 (220)
T ss_pred ecCcCCccccCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHHh-----------ChhhhCCHHHHHHHHHHHHH
Confidence 99999887 5799999987421 11 234566777777754332 33468999999999999999
Q ss_pred ccCCCeeeeeCCCCCcCHHHHHHHHHHHHh-cCCCEEEEEccCCCccc-cCCEEEEEeCCeEEEccChHHH
Q 037346 498 YQDADIFLLDDPFSPVDDHTGAHLFKFCWV-SSSKTVIYATHQVEFLP-AADLILVIKDGKITQAGKYSDI 566 (1156)
Q Consensus 498 ~~~~~illlDep~s~lD~~~~~~i~~~~~~-~~~~tvi~vtH~~~~~~-~~d~i~~l~~G~i~~~g~~~~l 566 (1156)
+.+|+++||||||++||+.+++.+.+.+.. .+++|+|++||+++.+. .||++++|++|++++.|+++++
T Consensus 149 ~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~g~i~~~~~~~~~ 219 (220)
T cd03263 149 IGGPSVLLLDEPTSGLDPASRRAIWDLILEVRKGRSIILTTHSMDEAEALCDRIAIMSDGKLRCIGSPQEL 219 (220)
T ss_pred hcCCCEEEECCCCCCCCHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhcCEEEEEECCEEEecCCHHHc
Confidence 999999999999999999999998876644 34689999999999986 5999999999999999987764
|
Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages. |
| >TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-37 Score=342.27 Aligned_cols=196 Identities=35% Similarity=0.456 Sum_probs=167.2
Q ss_pred EEEeeeEEEeCCCCCCCccccceEEeeCCeEEEEEcCCCCChHHHHHHHhCCCCCCCcEEEEcCe---------------
Q 037346 358 IEIIDGSFSWDFSSPNPTLRNINLKVFHGMRVAVCGTVGSGKSSCLSCILGGVPKESGIIRLCGT--------------- 422 (1156)
Q Consensus 358 i~~~~~~f~~~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKSTll~~i~g~~~~~~G~i~~~g~--------------- 422 (1156)
++++|++++|+. ++++|+|+||++++|++++|+||||||||||+++|+|+++|++|+|.++|.
T Consensus 2 l~~~~l~~~~~~--~~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~ 79 (243)
T TIGR02315 2 LEVENLSKVYPN--GKQALKNINLNINPGEFVAIIGPSGAGKSTLLRCINRLVEPSSGSILLEGTDITKLRGKKLRKLRR 79 (243)
T ss_pred eEEEeeeeecCC--CcceeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCccEEEECCEEhhhCCHHHHHHHHh
Confidence 679999999961 357999999999999999999999999999999999999999999999872
Q ss_pred -EEEEecCCcCCC-ccHHHHhhcCCC---------------CCHHHHHHHHHHhCCchhhhhCCCCCccccccCCCCCCH
Q 037346 423 -KAYVAQSPWIQS-GKIEENILFGKE---------------MDRERYERVLEACSLKKDLEVLPFGDQTIIGERGINLSG 485 (1156)
Q Consensus 423 -~~~v~Q~~~~~~-~ti~eni~~~~~---------------~~~~~~~~~~~~~~l~~~~~~~~~g~~t~v~~~g~~LSg 485 (1156)
++|++|++.++. .|++||+.++.. ...++..++++.+++...+ ...+.+|||
T Consensus 80 ~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-----------~~~~~~LSg 148 (243)
T TIGR02315 80 RIGMIFQHYNLIERLTVLENVLHGRLGYKPTWRSLLGRFSEEDKERALSALERVGLADKA-----------YQRADQLSG 148 (243)
T ss_pred heEEEcCCCcccccccHHHHHhhcccccccchhhhhccccHHHHHHHHHHHHHcCcHhhh-----------cCCcccCCH
Confidence 689999998775 699999987531 1123445566666665433 345678999
Q ss_pred HHHHHHHHHHhhccCCCeeeeeCCCCCcCHHHHHHHHHHHHh--c-CCCEEEEEccCCCccc-cCCEEEEEeCCeEEEcc
Q 037346 486 GQKQRIQIARPLYQDADIFLLDDPFSPVDDHTGAHLFKFCWV--S-SSKTVIYATHQVEFLP-AADLILVIKDGKITQAG 561 (1156)
Q Consensus 486 GqkqRi~lAral~~~~~illlDep~s~lD~~~~~~i~~~~~~--~-~~~tvi~vtH~~~~~~-~~d~i~~l~~G~i~~~g 561 (1156)
|||||++|||||+.+|+++||||||++||+.+++.+.+.+.. . .|+|+|++||+++.+. .||++++|++|++++.|
T Consensus 149 G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~tH~~~~~~~~~d~v~~l~~G~i~~~~ 228 (243)
T TIGR02315 149 GQQQRVAIARALAQQPDLILADEPIASLDPKTSKQVMDYLKRINKEDGITVIINLHQVDLAKKYADRIVGLKAGEIVFDG 228 (243)
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCeEEEEECCEEEecC
Confidence 999999999999999999999999999999999988776643 2 3789999999999985 59999999999999999
Q ss_pred ChHHH
Q 037346 562 KYSDI 566 (1156)
Q Consensus 562 ~~~~l 566 (1156)
+++++
T Consensus 229 ~~~~~ 233 (243)
T TIGR02315 229 APSEL 233 (243)
T ss_pred CHHHh
Confidence 98876
|
Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates. |
| >PRK14242 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-37 Score=344.32 Aligned_cols=204 Identities=28% Similarity=0.405 Sum_probs=172.0
Q ss_pred ccEEEeeeEEEeCCCCCCCccccceEEeeCCeEEEEEcCCCCChHHHHHHHhCCCC-----CCCcEEEEcC---------
Q 037346 356 TAIEIIDGSFSWDFSSPNPTLRNINLKVFHGMRVAVCGTVGSGKSSCLSCILGGVP-----KESGIIRLCG--------- 421 (1156)
Q Consensus 356 ~~i~~~~~~f~~~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKSTll~~i~g~~~-----~~~G~i~~~g--------- 421 (1156)
..++++|++++|+ ++++|+|+||+|++||+++|+||||||||||+++|+|+++ |++|+|.++|
T Consensus 5 ~~l~~~~l~~~~~---~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~ 81 (253)
T PRK14242 5 PKMEARGLSFFYG---DFQALHDISLEFEQNQVTALIGPSGCGKSTFLRCLNRMNDLIPGARVEGEILLDGENIYDPHVD 81 (253)
T ss_pred cEEEEeeeEEEEC---CeeeecceeEEEeCCCEEEEECCCCCCHHHHHHHHHhhcccCCCCCCceEEEECCEEccccccC
Confidence 3599999999996 3469999999999999999999999999999999999874 5899999977
Q ss_pred ------eEEEEecCCcCCCccHHHHhhcCCC---C-C----HHHHHHHHHHhCCchhhhhCCCCCccccccCCCCCCHHH
Q 037346 422 ------TKAYVAQSPWIQSGKIEENILFGKE---M-D----RERYERVLEACSLKKDLEVLPFGDQTIIGERGINLSGGQ 487 (1156)
Q Consensus 422 ------~~~~v~Q~~~~~~~ti~eni~~~~~---~-~----~~~~~~~~~~~~l~~~~~~~~~g~~t~v~~~g~~LSgGq 487 (1156)
.++|++|++.+++.|++||+.++.. . . .++.++.++.+++.+.+. +..++.+.+|||||
T Consensus 82 ~~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-------~~~~~~~~~LSgGq 154 (253)
T PRK14242 82 VVELRRRVGMVFQKPNPFPKSIFENVAYGLRVNGVKDKAYLAERVERSLRHAALWDEVK-------DRLHESALGLSGGQ 154 (253)
T ss_pred HHHHhhcEEEEecCCCCCcCcHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCchhhh-------HHhhCCcccCCHHH
Confidence 2689999999888899999987521 1 1 234556677777654322 12345678999999
Q ss_pred HHHHHHHHhhccCCCeeeeeCCCCCcCHHHHHHHHHHHHh-cCCCEEEEEccCCCccc-cCCEEEEEeCCeEEEccChHH
Q 037346 488 KQRIQIARPLYQDADIFLLDDPFSPVDDHTGAHLFKFCWV-SSSKTVIYATHQVEFLP-AADLILVIKDGKITQAGKYSD 565 (1156)
Q Consensus 488 kqRi~lAral~~~~~illlDep~s~lD~~~~~~i~~~~~~-~~~~tvi~vtH~~~~~~-~~d~i~~l~~G~i~~~g~~~~ 565 (1156)
|||++||||++.+|+++||||||++||+.+++.+.+.+.. .+++|+|++||+++.+. .||+|++|++|++++.|++++
T Consensus 155 ~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tvii~tH~~~~~~~~~d~v~~l~~G~i~~~g~~~~ 234 (253)
T PRK14242 155 QQRLCIARALAVEPEVLLMDEPASALDPIATQKIEELIHELKARYTIIIVTHNMQQAARVSDVTAFFYMGKLIEVGPTEQ 234 (253)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhcCCeEEEEEecHHHHHHhCCEEEEEECCEEEEeCCHHH
Confidence 9999999999999999999999999999999988876644 34789999999999885 599999999999999999988
Q ss_pred HHhc
Q 037346 566 ILNS 569 (1156)
Q Consensus 566 l~~~ 569 (1156)
+.+.
T Consensus 235 ~~~~ 238 (253)
T PRK14242 235 IFTR 238 (253)
T ss_pred HHcC
Confidence 7643
|
|
| >cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-37 Score=342.61 Aligned_cols=197 Identities=31% Similarity=0.431 Sum_probs=166.7
Q ss_pred EEEeeeEEEeCCCCCCCccccceEEeeCCeEEEEEcCCCCChHHHHHHHhCCCCCCCcEEEEcCe---------------
Q 037346 358 IEIIDGSFSWDFSSPNPTLRNINLKVFHGMRVAVCGTVGSGKSSCLSCILGGVPKESGIIRLCGT--------------- 422 (1156)
Q Consensus 358 i~~~~~~f~~~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKSTll~~i~g~~~~~~G~i~~~g~--------------- 422 (1156)
++++|++++|+. ++++|+|+||++++|++++|+||||||||||+++|+|+++|++|+|.++|.
T Consensus 1 l~~~~l~~~~~~--~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~ 78 (241)
T cd03256 1 IEVENLSKTYPN--GKKALKDVSLSINPGEFVALIGPSGAGKSTLLRCLNGLVEPTSGSVLIDGTDINKLKGKALRQLRR 78 (241)
T ss_pred CEEeeEEEecCC--ccEEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCCceEEECCEeccccCHhHHHHHHh
Confidence 468999999962 257999999999999999999999999999999999999999999999872
Q ss_pred -EEEEecCCcCCC-ccHHHHhhcCCC---------------CCHHHHHHHHHHhCCchhhhhCCCCCccccccCCCCCCH
Q 037346 423 -KAYVAQSPWIQS-GKIEENILFGKE---------------MDRERYERVLEACSLKKDLEVLPFGDQTIIGERGINLSG 485 (1156)
Q Consensus 423 -~~~v~Q~~~~~~-~ti~eni~~~~~---------------~~~~~~~~~~~~~~l~~~~~~~~~g~~t~v~~~g~~LSg 485 (1156)
++|+||++.++. .|++||+.++.. ...++..++++.+++.+. ....+.+|||
T Consensus 79 ~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-----------~~~~~~~LS~ 147 (241)
T cd03256 79 QIGMIFQQFNLIERLSVLENVLSGRLGRRSTWRSLFGLFPKEEKQRALAALERVGLLDK-----------AYQRADQLSG 147 (241)
T ss_pred ccEEEcccCcccccCcHHHHHHhhhcccchhhhhhcccCcHHHHHHHHHHHHHcCChhh-----------hCCCcccCCH
Confidence 689999998776 699999986521 112234455666665432 2345679999
Q ss_pred HHHHHHHHHHhhccCCCeeeeeCCCCCcCHHHHHHHHHHHHh---cCCCEEEEEccCCCccc-cCCEEEEEeCCeEEEcc
Q 037346 486 GQKQRIQIARPLYQDADIFLLDDPFSPVDDHTGAHLFKFCWV---SSSKTVIYATHQVEFLP-AADLILVIKDGKITQAG 561 (1156)
Q Consensus 486 GqkqRi~lAral~~~~~illlDep~s~lD~~~~~~i~~~~~~---~~~~tvi~vtH~~~~~~-~~d~i~~l~~G~i~~~g 561 (1156)
|||||++||||++.+|+++||||||++||+.+++.+.+.+.. ..|+|+|++||+++.+. .||++++|++|++++.|
T Consensus 148 G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~tH~~~~~~~~~d~v~~l~~G~i~~~~ 227 (241)
T cd03256 148 GQQQRVAIARALMQQPKLILADEPVASLDPASSRQVMDLLKRINREEGITVIVSLHQVDLAREYADRIVGLKDGRIVFDG 227 (241)
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEeec
Confidence 999999999999999999999999999999999998876644 24899999999999987 69999999999999999
Q ss_pred ChHHHH
Q 037346 562 KYSDIL 567 (1156)
Q Consensus 562 ~~~~l~ 567 (1156)
+++++.
T Consensus 228 ~~~~~~ 233 (241)
T cd03256 228 PPAELT 233 (241)
T ss_pred CHHHhh
Confidence 988763
|
Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-37 Score=334.16 Aligned_cols=190 Identities=26% Similarity=0.382 Sum_probs=165.2
Q ss_pred EEEeeeEEEeCCCCCCCccccceEEeeCCeEEEEEcCCCCChHHHHHHHhCCCCCCCcEEEEcCe-----------EEEE
Q 037346 358 IEIIDGSFSWDFSSPNPTLRNINLKVFHGMRVAVCGTVGSGKSSCLSCILGGVPKESGIIRLCGT-----------KAYV 426 (1156)
Q Consensus 358 i~~~~~~f~~~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKSTll~~i~g~~~~~~G~i~~~g~-----------~~~v 426 (1156)
++++|++++|+ ++++|+|+||++++|++++|+||||||||||+++|+|+++|++|+|.++|. ++|+
T Consensus 1 l~~~~l~~~~~---~~~~l~~~~~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~i~~~ 77 (208)
T cd03268 1 LKTNDLTKTYG---KKRVLDDISLHVKKGEIYGFLGPNGAGKTTTMKIILGLIKPDSGEITFDGKSYQKNIEALRRIGAL 77 (208)
T ss_pred CEEEEEEEEEC---CeEeEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCCcccchHHHHhhEEEe
Confidence 46899999995 357999999999999999999999999999999999999999999999873 7899
Q ss_pred ecCCcCC-CccHHHHhhcCC---CCCHHHHHHHHHHhCCchhhhhCCCCCccccccCCCCCCHHHHHHHHHHHhhccCCC
Q 037346 427 AQSPWIQ-SGKIEENILFGK---EMDRERYERVLEACSLKKDLEVLPFGDQTIIGERGINLSGGQKQRIQIARPLYQDAD 502 (1156)
Q Consensus 427 ~Q~~~~~-~~ti~eni~~~~---~~~~~~~~~~~~~~~l~~~~~~~~~g~~t~v~~~g~~LSgGqkqRi~lAral~~~~~ 502 (1156)
+|++.++ +.|++||+.++. ..++++.+++++..++.+... +.+.+||||||||++||||++.+|+
T Consensus 78 ~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~-----------~~~~~LS~G~~qrv~la~al~~~p~ 146 (208)
T cd03268 78 IEAPGFYPNLTARENLRLLARLLGIRKKRIDEVLDVVGLKDSAK-----------KKVKGFSLGMKQRLGIALALLGNPD 146 (208)
T ss_pred cCCCccCccCcHHHHHHHHHHhcCCcHHHHHHHHHHcCCHHHHh-----------hhHhhCCHHHHHHHHHHHHHhcCCC
Confidence 9999876 569999998753 234566777888888765443 3456899999999999999999999
Q ss_pred eeeeeCCCCCcCHHHHHHHHHHHHh--cCCCEEEEEccCCCccc-cCCEEEEEeCCeEEEcc
Q 037346 503 IFLLDDPFSPVDDHTGAHLFKFCWV--SSSKTVIYATHQVEFLP-AADLILVIKDGKITQAG 561 (1156)
Q Consensus 503 illlDep~s~lD~~~~~~i~~~~~~--~~~~tvi~vtH~~~~~~-~~d~i~~l~~G~i~~~g 561 (1156)
++||||||++||+.+++.+.+.+.. .+++|+|++||+++.+. .||++++|++|++++.|
T Consensus 147 llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~tH~~~~~~~~~d~v~~l~~g~i~~~g 208 (208)
T cd03268 147 LLILDEPTNGLDPDGIKELRELILSLRDQGITVLISSHLLSEIQKVADRIGIINKGKLIEEG 208 (208)
T ss_pred EEEECCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEcCCHHHHHHhcCEEEEEECCEEEecC
Confidence 9999999999999999988876643 35899999999999886 59999999999998765
|
Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein. |
| >cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE) | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.4e-38 Score=338.37 Aligned_cols=189 Identities=33% Similarity=0.446 Sum_probs=160.3
Q ss_pred EEEeeeEEEeCCCC-CCCccccceEEeeCCeEEEEEcCCCCChHHHHHHHhCCCCCCCcEEEEcC---------------
Q 037346 358 IEIIDGSFSWDFSS-PNPTLRNINLKVFHGMRVAVCGTVGSGKSSCLSCILGGVPKESGIIRLCG--------------- 421 (1156)
Q Consensus 358 i~~~~~~f~~~~~~-~~~~l~~i~l~i~~g~~~~ivG~~GsGKSTll~~i~g~~~~~~G~i~~~g--------------- 421 (1156)
++++|++++|+... .+++|+|+||++++|++++|+||||||||||+++|+|+++|++|+|.++|
T Consensus 1 l~~~~l~~~~~~~~~~~~il~~~s~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~ 80 (218)
T cd03255 1 IELKNLSKTYGGGGEKVQALKGVSLSIEKGEFVAIVGPSGSGKSTLLNILGGLDRPTSGEVRVDGTDISKLSEKELAAFR 80 (218)
T ss_pred CeEeeeEEEecCCCcceeEEeeeEEEEcCCCEEEEEcCCCCCHHHHHHHHhCCcCCCceeEEECCEehhhcchhHHHHHH
Confidence 46899999996311 15799999999999999999999999999999999999999999999876
Q ss_pred --eEEEEecCCcCCCc-cHHHHhhcCCCC---C----HHHHHHHHHHhCCchhhhhCCCCCccccccCCCCCCHHHHHHH
Q 037346 422 --TKAYVAQSPWIQSG-KIEENILFGKEM---D----RERYERVLEACSLKKDLEVLPFGDQTIIGERGINLSGGQKQRI 491 (1156)
Q Consensus 422 --~~~~v~Q~~~~~~~-ti~eni~~~~~~---~----~~~~~~~~~~~~l~~~~~~~~~g~~t~v~~~g~~LSgGqkqRi 491 (1156)
.++|++|+|.++.. |++||+.++... + ++++.++++.+++.+.++ ..+.+||||||||+
T Consensus 81 ~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-----------~~~~~LS~G~~qrv 149 (218)
T cd03255 81 RRHIGFVFQSFNLLPDLTALENVELPLLLAGVPKKERRERAEELLERVGLGDRLN-----------HYPSELSGGQQQRV 149 (218)
T ss_pred hhcEEEEeeccccCCCCcHHHHHHHHHhhcCCCHHHHHHHHHHHHHHcCCchhhh-----------cChhhcCHHHHHHH
Confidence 27999999988865 999999885321 1 234566777777754433 44568999999999
Q ss_pred HHHHhhccCCCeeeeeCCCCCcCHHHHHHHHHHHHh--c-CCCEEEEEccCCCccccCCEEEEEeCCeE
Q 037346 492 QIARPLYQDADIFLLDDPFSPVDDHTGAHLFKFCWV--S-SSKTVIYATHQVEFLPAADLILVIKDGKI 557 (1156)
Q Consensus 492 ~lAral~~~~~illlDep~s~lD~~~~~~i~~~~~~--~-~~~tvi~vtH~~~~~~~~d~i~~l~~G~i 557 (1156)
+|||||+.+|+++||||||++||+.+++.+.+.+.. . .++|+|++||+++.+..||++++|++|++
T Consensus 150 ~la~al~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~d~v~~l~~G~i 218 (218)
T cd03255 150 AIARALANDPKIILADEPTGNLDSETGKEVMELLRELNKEAGTTIVVVTHDPELAEYADRIIELRDGKI 218 (218)
T ss_pred HHHHHHccCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCeEEEEECCHHHHhhhcEEEEeeCCcC
Confidence 999999999999999999999999999988876644 2 47899999999998878999999999974
|
They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane. |
| >PRK14269 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-37 Score=342.55 Aligned_cols=202 Identities=24% Similarity=0.358 Sum_probs=172.9
Q ss_pred cEEEeeeEEEeCCCCCCCccccceEEeeCCeEEEEEcCCCCChHHHHHHHhCCCC---CCCcEEEEcCe-----------
Q 037346 357 AIEIIDGSFSWDFSSPNPTLRNINLKVFHGMRVAVCGTVGSGKSSCLSCILGGVP---KESGIIRLCGT----------- 422 (1156)
Q Consensus 357 ~i~~~~~~f~~~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKSTll~~i~g~~~---~~~G~i~~~g~----------- 422 (1156)
.++++|+++.|+ ++++|+|+||++++||+++|+||||||||||+++|+|+++ |++|+|.++|.
T Consensus 2 ~~~~~~l~~~~~---~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~G~i~~~g~~i~~~~~~~~~ 78 (246)
T PRK14269 2 IAKTTNLNLFYG---KKQALFDINMQIEQNKITALIGASGCGKSTFLRCFNRMNDKIAKIDGLVEIEGKDVKNQDVVALR 78 (246)
T ss_pred ceeeeeeEEEEC---CEeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCCceEEEECCEecccCCHHHHh
Confidence 478999999996 3579999999999999999999999999999999999984 68999999883
Q ss_pred --EEEEecCCcCCCccHHHHhhcCCC---C------CHHHHHHHHHHhCCchhhhhCCCCCccccccCCCCCCHHHHHHH
Q 037346 423 --KAYVAQSPWIQSGKIEENILFGKE---M------DRERYERVLEACSLKKDLEVLPFGDQTIIGERGINLSGGQKQRI 491 (1156)
Q Consensus 423 --~~~v~Q~~~~~~~ti~eni~~~~~---~------~~~~~~~~~~~~~l~~~~~~~~~g~~t~v~~~g~~LSgGqkqRi 491 (1156)
++|+||+|.+++.|++||+.++.. . .+++..++++.+++.+.+.. ...+.+.+||||||||+
T Consensus 79 ~~i~~~~q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-------~~~~~~~~LS~G~~qrv 151 (246)
T PRK14269 79 KNVGMVFQQPNVFVKSIYENISYAPKLHGMIKNKDEEEALVVDCLQKVGLFEEVKD-------KLKQNALALSGGQQQRL 151 (246)
T ss_pred hhEEEEecCCccccccHHHHhhhHHhhcCcccChHHHHHHHHHHHHHcCCChhhhH-------HhcCCcccCCHHHHHHH
Confidence 699999999998999999987521 1 12345667788887654432 23456789999999999
Q ss_pred HHHHhhccCCCeeeeeCCCCCcCHHHHHHHHHHHHh-cCCCEEEEEccCCCccc-cCCEEEEEeCCeEEEccChHHHHh
Q 037346 492 QIARPLYQDADIFLLDDPFSPVDDHTGAHLFKFCWV-SSSKTVIYATHQVEFLP-AADLILVIKDGKITQAGKYSDILN 568 (1156)
Q Consensus 492 ~lAral~~~~~illlDep~s~lD~~~~~~i~~~~~~-~~~~tvi~vtH~~~~~~-~~d~i~~l~~G~i~~~g~~~~l~~ 568 (1156)
+||||++++|+++||||||++||+.++..+.+.+.. .+++|+|++||+++.+. .||+|++|++|++++.|+.+++..
T Consensus 152 ~laral~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 230 (246)
T PRK14269 152 CIARALAIKPKLLLLDEPTSALDPISSGVIEELLKELSHNLSMIMVTHNMQQGKRVADYTAFFHLGELIEFGESKEFFE 230 (246)
T ss_pred HHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHhhCcEEEEEECCEEEEECCHHHHHh
Confidence 999999999999999999999999999988776644 35889999999999876 599999999999999999988764
|
|
| >PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-37 Score=339.54 Aligned_cols=195 Identities=23% Similarity=0.338 Sum_probs=165.6
Q ss_pred cEEEeeeEEEeCCCC-CCCccccceEEeeCCeEEEEEcCCCCChHHHHHHHhCCCCCCCcEEEEcC--------------
Q 037346 357 AIEIIDGSFSWDFSS-PNPTLRNINLKVFHGMRVAVCGTVGSGKSSCLSCILGGVPKESGIIRLCG-------------- 421 (1156)
Q Consensus 357 ~i~~~~~~f~~~~~~-~~~~l~~i~l~i~~g~~~~ivG~~GsGKSTll~~i~g~~~~~~G~i~~~g-------------- 421 (1156)
.++++|+++.|+... ..++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|
T Consensus 5 ~l~~~~l~~~~~~~~~~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~i~~~~~~~~~~~ 84 (233)
T PRK11629 5 LLQCDNLCKRYQEGSVQTDVLHNVSFSIGEGEMMAIVGSSGSGKSTLLHLLGGLDTPTSGDVIFNGQPMSKLSSAAKAEL 84 (233)
T ss_pred eEEEEeEEEEcCCCCcceeeEEeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcCcCCHHHHHHH
Confidence 589999999996322 14799999999999999999999999999999999999999999999987
Q ss_pred ---eEEEEecCCcCCCc-cHHHHhhcCC---CCC----HHHHHHHHHHhCCchhhhhCCCCCccccccCCCCCCHHHHHH
Q 037346 422 ---TKAYVAQSPWIQSG-KIEENILFGK---EMD----RERYERVLEACSLKKDLEVLPFGDQTIIGERGINLSGGQKQR 490 (1156)
Q Consensus 422 ---~~~~v~Q~~~~~~~-ti~eni~~~~---~~~----~~~~~~~~~~~~l~~~~~~~~~g~~t~v~~~g~~LSgGqkqR 490 (1156)
.++|++|+|.++.. |++||+.++. ..+ +++..++++.+++.+.. .+...+||||||||
T Consensus 85 ~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~-----------~~~~~~LSgG~~qr 153 (233)
T PRK11629 85 RNQKLGFIYQFHHLLPDFTALENVAMPLLIGKKKPAEINSRALEMLAAVGLEHRA-----------NHRPSELSGGERQR 153 (233)
T ss_pred HhccEEEEecCcccCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchhh-----------hCChhhCCHHHHHH
Confidence 27899999988764 9999998742 112 23456677777765433 34457899999999
Q ss_pred HHHHHhhccCCCeeeeeCCCCCcCHHHHHHHHHHHHh---cCCCEEEEEccCCCccccCCEEEEEeCCeEEEccC
Q 037346 491 IQIARPLYQDADIFLLDDPFSPVDDHTGAHLFKFCWV---SSSKTVIYATHQVEFLPAADLILVIKDGKITQAGK 562 (1156)
Q Consensus 491 i~lAral~~~~~illlDep~s~lD~~~~~~i~~~~~~---~~~~tvi~vtH~~~~~~~~d~i~~l~~G~i~~~g~ 562 (1156)
++||||++.+|+++||||||++||+.+.+.+.+.+.. .+|+|+|++||+++.+..+|++++|++|++++.|+
T Consensus 154 l~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tvii~sH~~~~~~~~~~~~~l~~G~i~~~~~ 228 (233)
T PRK11629 154 VAIARALVNNPRLVLADEPTGNLDARNADSIFQLLGELNRLQGTAFLVVTHDLQLAKRMSRQLEMRDGRLTAELS 228 (233)
T ss_pred HHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHhhCEEEEEECCEEEEEec
Confidence 9999999999999999999999999999988876643 24899999999999988888999999999998765
|
|
| >PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-37 Score=341.11 Aligned_cols=195 Identities=28% Similarity=0.346 Sum_probs=168.5
Q ss_pred ccEEEeeeEEEeCCCCCCCccccceEEeeCCeEEEEEcCCCCChHHHHHHHhCCCCCCCcEEEEcC--------eEEEEe
Q 037346 356 TAIEIIDGSFSWDFSSPNPTLRNINLKVFHGMRVAVCGTVGSGKSSCLSCILGGVPKESGIIRLCG--------TKAYVA 427 (1156)
Q Consensus 356 ~~i~~~~~~f~~~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKSTll~~i~g~~~~~~G~i~~~g--------~~~~v~ 427 (1156)
..|+++|++++|+ ++++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++| .++|++
T Consensus 11 ~~l~i~~l~~~~~---~~~il~~isl~i~~Ge~~~I~G~NGsGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~~~i~~v~ 87 (257)
T PRK11247 11 TPLLLNAVSKRYG---ERTVLNQLDLHIPAGQFVAVVGRSGCGKSTLLRLLAGLETPSAGELLAGTAPLAEAREDTRLMF 87 (257)
T ss_pred CcEEEEEEEEEEC---CcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEHHHhhCceEEEe
Confidence 3599999999996 35799999999999999999999999999999999999999999999987 379999
Q ss_pred cCCcCCC-ccHHHHhhcCCC-CCHHHHHHHHHHhCCchhhhhCCCCCccccccCCCCCCHHHHHHHHHHHhhccCCCeee
Q 037346 428 QSPWIQS-GKIEENILFGKE-MDRERYERVLEACSLKKDLEVLPFGDQTIIGERGINLSGGQKQRIQIARPLYQDADIFL 505 (1156)
Q Consensus 428 Q~~~~~~-~ti~eni~~~~~-~~~~~~~~~~~~~~l~~~~~~~~~g~~t~v~~~g~~LSgGqkqRi~lAral~~~~~ill 505 (1156)
|++.++. .|++||+.++.. ..+++..++++.+++.+.. ...+.+||||||||++|||||+.+|+++|
T Consensus 88 q~~~l~~~~tv~enl~~~~~~~~~~~~~~~l~~~gl~~~~-----------~~~~~~LSgGqkqrl~laraL~~~p~lll 156 (257)
T PRK11247 88 QDARLLPWKKVIDNVGLGLKGQWRDAALQALAAVGLADRA-----------NEWPAALSGGQKQRVALARALIHRPGLLL 156 (257)
T ss_pred cCccCCCCCcHHHHHHhcccchHHHHHHHHHHHcCChhHh-----------cCChhhCCHHHHHHHHHHHHHhcCCCEEE
Confidence 9998876 699999988642 1245566777777776543 34457899999999999999999999999
Q ss_pred eeCCCCCcCHHHHHHHHHHHHh---cCCCEEEEEccCCCccc-cCCEEEEEeCCeEEEccChH
Q 037346 506 LDDPFSPVDDHTGAHLFKFCWV---SSSKTVIYATHQVEFLP-AADLILVIKDGKITQAGKYS 564 (1156)
Q Consensus 506 lDep~s~lD~~~~~~i~~~~~~---~~~~tvi~vtH~~~~~~-~~d~i~~l~~G~i~~~g~~~ 564 (1156)
|||||++||+.++..+.+.+.. ..++|+|++||+++.+. .||+|++|++|++++.|+.+
T Consensus 157 LDEPt~~LD~~~~~~l~~~L~~~~~~~~~tviivsHd~~~~~~~~d~i~~l~~G~i~~~~~~~ 219 (257)
T PRK11247 157 LDEPLGALDALTRIEMQDLIESLWQQHGFTVLLVTHDVSEAVAMADRVLLIEEGKIGLDLTVD 219 (257)
T ss_pred EeCCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEeecccc
Confidence 9999999999999988776643 24789999999999875 59999999999999887653
|
|
| >PRK09536 btuD corrinoid ABC transporter ATPase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-37 Score=360.26 Aligned_cols=199 Identities=26% Similarity=0.448 Sum_probs=173.8
Q ss_pred cEEEeeeEEEeCCCCCCCccccceEEeeCCeEEEEEcCCCCChHHHHHHHhCCCCCCCcEEEEcCe-------------E
Q 037346 357 AIEIIDGSFSWDFSSPNPTLRNINLKVFHGMRVAVCGTVGSGKSSCLSCILGGVPKESGIIRLCGT-------------K 423 (1156)
Q Consensus 357 ~i~~~~~~f~~~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKSTll~~i~g~~~~~~G~i~~~g~-------------~ 423 (1156)
.++++|++++|+ ++++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|. +
T Consensus 3 ~L~~~nls~~y~---~~~vL~~vs~~i~~Geiv~liGpNGaGKSTLLk~LaGll~p~sG~I~l~G~~i~~~~~~~~~~~i 79 (402)
T PRK09536 3 MIDVSDLSVEFG---DTTVLDGVDLSVREGSLVGLVGPNGAGKTTLLRAINGTLTPTAGTVLVAGDDVEALSARAASRRV 79 (402)
T ss_pred eEEEeeEEEEEC---CEEEEEeeEEEECCCCEEEEECCCCchHHHHHHHHhcCCCCCCcEEEECCEEcCcCCHHHHhcce
Confidence 589999999996 457999999999999999999999999999999999999999999999982 6
Q ss_pred EEEecCCcC-CCccHHHHhhcCCC-----C------CHHHHHHHHHHhCCchhhhhCCCCCccccccCCCCCCHHHHHHH
Q 037346 424 AYVAQSPWI-QSGKIEENILFGKE-----M------DRERYERVLEACSLKKDLEVLPFGDQTIIGERGINLSGGQKQRI 491 (1156)
Q Consensus 424 ~~v~Q~~~~-~~~ti~eni~~~~~-----~------~~~~~~~~~~~~~l~~~~~~~~~g~~t~v~~~g~~LSgGqkqRi 491 (1156)
+|++|++.+ ++.|++||+.+++. + +.++.+++++..++.+..+ ....+||||||||+
T Consensus 80 g~v~q~~~l~~~~tv~e~v~~~~~~~~~~~~~~~~~~~~~v~~~le~vgl~~~~~-----------~~~~~LSgGerQRv 148 (402)
T PRK09536 80 ASVPQDTSLSFEFDVRQVVEMGRTPHRSRFDTWTETDRAAVERAMERTGVAQFAD-----------RPVTSLSGGERQRV 148 (402)
T ss_pred EEEccCCCCCCCCCHHHHHHhccchhcccccCCCHHHHHHHHHHHHHcCCchhhc-----------CChhhCCHHHHHHH
Confidence 999999986 57799999988742 1 2345667777777765443 34578999999999
Q ss_pred HHHHhhccCCCeeeeeCCCCCcCHHHHHHHHHHHHh--cCCCEEEEEccCCCccc-cCCEEEEEeCCeEEEccChHHHHh
Q 037346 492 QIARPLYQDADIFLLDDPFSPVDDHTGAHLFKFCWV--SSSKTVIYATHQVEFLP-AADLILVIKDGKITQAGKYSDILN 568 (1156)
Q Consensus 492 ~lAral~~~~~illlDep~s~lD~~~~~~i~~~~~~--~~~~tvi~vtH~~~~~~-~~d~i~~l~~G~i~~~g~~~~l~~ 568 (1156)
+|||||+++|+++||||||++||+.++..+.+.+.. .+|+|+|++||+++.+. .||++++|++|++++.|++++++.
T Consensus 149 ~IArAL~~~P~iLLLDEPtsgLD~~~~~~l~~lL~~l~~~g~TIIivsHdl~~~~~~adrii~l~~G~iv~~G~~~ev~~ 228 (402)
T PRK09536 149 LLARALAQATPVLLLDEPTASLDINHQVRTLELVRRLVDDGKTAVAAIHDLDLAARYCDELVLLADGRVRAAGPPADVLT 228 (402)
T ss_pred HHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEEEECCEEEEecCHHHHhC
Confidence 999999999999999999999999999988876543 35889999999999985 599999999999999999999875
Q ss_pred c
Q 037346 569 S 569 (1156)
Q Consensus 569 ~ 569 (1156)
.
T Consensus 229 ~ 229 (402)
T PRK09536 229 A 229 (402)
T ss_pred c
Confidence 3
|
|
| >TIGR00972 3a0107s01c2 phosphate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-37 Score=341.97 Aligned_cols=201 Identities=27% Similarity=0.377 Sum_probs=170.4
Q ss_pred EEEeeeEEEeCCCCCCCccccceEEeeCCeEEEEEcCCCCChHHHHHHHhCCCCCC-----CcEEEEcCe----------
Q 037346 358 IEIIDGSFSWDFSSPNPTLRNINLKVFHGMRVAVCGTVGSGKSSCLSCILGGVPKE-----SGIIRLCGT---------- 422 (1156)
Q Consensus 358 i~~~~~~f~~~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKSTll~~i~g~~~~~-----~G~i~~~g~---------- 422 (1156)
++++|++++|+ +.++++|+||+|++||+++|+|+||||||||+++|+|+++|+ +|+|.++|.
T Consensus 2 l~~~~l~~~~~---~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~~~~~~G~i~~~g~~~~~~~~~~~ 78 (247)
T TIGR00972 2 IEIENLNLFYG---EKEALKNINLDIPKNQVTALIGPSGCGKSTLLRSLNRMNDLVPGVRIEGKVLFDGQDIYDKKIDVV 78 (247)
T ss_pred EEEEEEEEEEC---CeeeecceeEEECCCCEEEEECCCCCCHHHHHHHHhccCCCCcCCCCceEEEECCEEccccccchH
Confidence 78999999996 346999999999999999999999999999999999999998 999999762
Q ss_pred -----EEEEecCCcCCCccHHHHhhcCCC----CC----HHHHHHHHHHhCCchhhhhCCCCCccccccCCCCCCHHHHH
Q 037346 423 -----KAYVAQSPWIQSGKIEENILFGKE----MD----RERYERVLEACSLKKDLEVLPFGDQTIIGERGINLSGGQKQ 489 (1156)
Q Consensus 423 -----~~~v~Q~~~~~~~ti~eni~~~~~----~~----~~~~~~~~~~~~l~~~~~~~~~g~~t~v~~~g~~LSgGqkq 489 (1156)
++|+||++.++..|++||+.++.. .. .++.+++++..++.+.+. ........+|||||||
T Consensus 79 ~~~~~i~~v~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-------~~~~~~~~~LSgG~~q 151 (247)
T TIGR00972 79 ELRRRVGMVFQKPNPFPMSIYDNIAYGPRLHGIKDKKELDEIVEESLKKAALWDEVK-------DRLHDSALGLSGGQQQ 151 (247)
T ss_pred HHHhheEEEecCcccCCCCHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCCcchh-------hHhhCCcccCCHHHHH
Confidence 689999999888999999987521 11 234556677777753221 1234556799999999
Q ss_pred HHHHHHhhccCCCeeeeeCCCCCcCHHHHHHHHHHHHh-cCCCEEEEEccCCCccc-cCCEEEEEeCCeEEEccChHHHH
Q 037346 490 RIQIARPLYQDADIFLLDDPFSPVDDHTGAHLFKFCWV-SSSKTVIYATHQVEFLP-AADLILVIKDGKITQAGKYSDIL 567 (1156)
Q Consensus 490 Ri~lAral~~~~~illlDep~s~lD~~~~~~i~~~~~~-~~~~tvi~vtH~~~~~~-~~d~i~~l~~G~i~~~g~~~~l~ 567 (1156)
|++||||++.+|+++||||||++||+.++..+.+.+.. .+++|+|++||+++.+. .||+|++|++|++++.|+++++.
T Consensus 152 rv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~ 231 (247)
T TIGR00972 152 RLCIARALAVEPEVLLLDEPTSALDPIATGKIEELIQELKKKYTIVIVTHNMQQAARISDRTAFFYDGELVEYGPTEQIF 231 (247)
T ss_pred HHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhcCeEEEEecCHHHHHHhCCEEEEEECCEEEEeCCHHHHH
Confidence 99999999999999999999999999999988876644 33589999999999875 59999999999999999998876
Q ss_pred h
Q 037346 568 N 568 (1156)
Q Consensus 568 ~ 568 (1156)
.
T Consensus 232 ~ 232 (247)
T TIGR00972 232 T 232 (247)
T ss_pred h
Confidence 4
|
This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters. |
| >TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-37 Score=339.44 Aligned_cols=198 Identities=25% Similarity=0.433 Sum_probs=168.7
Q ss_pred EEEeeeEEEeCCCCCCCccccceEEeeCCeEEEEEcCCCCChHHHHHHHhCCCCCCCcEEEEcCe------------EEE
Q 037346 358 IEIIDGSFSWDFSSPNPTLRNINLKVFHGMRVAVCGTVGSGKSSCLSCILGGVPKESGIIRLCGT------------KAY 425 (1156)
Q Consensus 358 i~~~~~~f~~~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKSTll~~i~g~~~~~~G~i~~~g~------------~~~ 425 (1156)
++++|++++|+ ++++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|. ++|
T Consensus 2 l~~~~l~~~~~---~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~i~~~~~~~~~~i~~ 78 (236)
T TIGR03864 2 LEVAGLSFAYG---ARRALDDVSFTVRPGEFVALLGPNGAGKSTLFSLLTRLYVAQEGQISVAGHDLRRAPRAALARLGV 78 (236)
T ss_pred EEEEeeEEEEC---CEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCEEcccCChhhhhhEEE
Confidence 68999999996 357999999999999999999999999999999999999999999999873 689
Q ss_pred EecCCcC-CCccHHHHhhcCCC---CC----HHHHHHHHHHhCCchhhhhCCCCCccccccCCCCCCHHHHHHHHHHHhh
Q 037346 426 VAQSPWI-QSGKIEENILFGKE---MD----RERYERVLEACSLKKDLEVLPFGDQTIIGERGINLSGGQKQRIQIARPL 497 (1156)
Q Consensus 426 v~Q~~~~-~~~ti~eni~~~~~---~~----~~~~~~~~~~~~l~~~~~~~~~g~~t~v~~~g~~LSgGqkqRi~lAral 497 (1156)
++|++.+ +..|++||+.++.. .. .++..+.++..++.+. .+..+.+||||||||++||||+
T Consensus 79 ~~q~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~-----------~~~~~~~LS~G~~qrl~laral 147 (236)
T TIGR03864 79 VFQQPTLDLDLSVRQNLRYHAALHGLSRAEARERIAALLARLGLAER-----------ADDKVRELNGGHRRRVEIARAL 147 (236)
T ss_pred eCCCCCCcccCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhh-----------hcCChhhCCHHHHHHHHHHHHH
Confidence 9999977 46799999986532 22 1234455555555432 3455678999999999999999
Q ss_pred ccCCCeeeeeCCCCCcCHHHHHHHHHHHHh---cCCCEEEEEccCCCccccCCEEEEEeCCeEEEccChHHHHhc
Q 037346 498 YQDADIFLLDDPFSPVDDHTGAHLFKFCWV---SSSKTVIYATHQVEFLPAADLILVIKDGKITQAGKYSDILNS 569 (1156)
Q Consensus 498 ~~~~~illlDep~s~lD~~~~~~i~~~~~~---~~~~tvi~vtH~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~ 569 (1156)
+.+|+++||||||++||+.+++.+.+.+.. .+|+|+|++||+++.+..||++++|++|++++.|+++++...
T Consensus 148 ~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~ 222 (236)
T TIGR03864 148 LHRPALLLLDEPTVGLDPASRAAIVAHVRALCRDQGLSVLWATHLVDEIEADDRLVVLHRGRVLADGAAAELRGA 222 (236)
T ss_pred hcCCCEEEEcCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEecChhhHhhCCEEEEEeCCeEEEeCCHHHHHHH
Confidence 999999999999999999999998876644 248999999999999877999999999999999998887653
|
Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification. |
| >COG4175 ProV ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-37 Score=328.68 Aligned_cols=203 Identities=30% Similarity=0.382 Sum_probs=175.8
Q ss_pred cEEEeeeEEEeCCCC---------------------CCCccccceEEeeCCeEEEEEcCCCCChHHHHHHHhCCCCCCCc
Q 037346 357 AIEIIDGSFSWDFSS---------------------PNPTLRNINLKVFHGMRVAVCGTVGSGKSSCLSCILGGVPKESG 415 (1156)
Q Consensus 357 ~i~~~~~~f~~~~~~---------------------~~~~l~~i~l~i~~g~~~~ivG~~GsGKSTll~~i~g~~~~~~G 415 (1156)
.|+++|+++-+..++ ...-++|+||+++.||+.+|.|-||||||||++++.|+++|+.|
T Consensus 4 ~i~i~nv~kiFG~~~~~a~~~~~~G~~k~ei~~~tg~vvGv~~~sl~v~~GeIfViMGLSGSGKSTLvR~~NrLiept~G 83 (386)
T COG4175 4 KIEIKNVYKIFGKNPKRALKLLDQGKSKAEILKKTGLVVGVNDASLDVEEGEIFVIMGLSGSGKSTLVRLLNRLIEPTRG 83 (386)
T ss_pred eEEeecceeecccCHHHHHHHHHcCCcHHHHHHhhCcEEeeccceeeecCCeEEEEEecCCCCHHHHHHHHhccCCCCCc
Confidence 478888888776431 12347999999999999999999999999999999999999999
Q ss_pred EEEEcCe-----------------EEEEecCCcCCC-ccHHHHhhcCCCC-------CHHHHHHHHHHhCCchhhhhCCC
Q 037346 416 IIRLCGT-----------------KAYVAQSPWIQS-GKIEENILFGKEM-------DRERYERVLEACSLKKDLEVLPF 470 (1156)
Q Consensus 416 ~i~~~g~-----------------~~~v~Q~~~~~~-~ti~eni~~~~~~-------~~~~~~~~~~~~~l~~~~~~~~~ 470 (1156)
+|.++|. +++|+|+.-+++ .||.||+.||.+. .+++..++++..+|..+-...|
T Consensus 84 ~ilv~g~di~~~~~~~Lr~~Rr~~~sMVFQ~FaLlPhrtVl~Nv~fGLev~Gv~~~er~~~a~~~l~~VgL~~~~~~yp- 162 (386)
T COG4175 84 EILVDGKDIAKLSAAELRELRRKKISMVFQSFALLPHRTVLENVAFGLEVQGVPKAEREERALEALELVGLEGYADKYP- 162 (386)
T ss_pred eEEECCcchhcCCHHHHHHHHhhhhhhhhhhhccccchhHhhhhhcceeecCCCHHHHHHHHHHHHHHcCchhhhhcCc-
Confidence 9999983 689999987764 5999999999753 2355667888889988777666
Q ss_pred CCccccccCCCCCCHHHHHHHHHHHhhccCCCeeeeeCCCCCcCHHHHHHHHHHHHh---cCCCEEEEEccCCCc-cccC
Q 037346 471 GDQTIIGERGINLSGGQKQRIQIARPLYQDADIFLLDDPFSPVDDHTGAHLFKFCWV---SSSKTVIYATHQVEF-LPAA 546 (1156)
Q Consensus 471 g~~t~v~~~g~~LSgGqkqRi~lAral~~~~~illlDep~s~lD~~~~~~i~~~~~~---~~~~tvi~vtH~~~~-~~~~ 546 (1156)
.+||||+||||.|||||..+|||+|+|||||||||--+.++-+.++. .-+||+|+||||++. ++..
T Consensus 163 ----------~eLSGGMqQRVGLARAla~~~~IlLMDEaFSALDPLIR~~mQdeLl~Lq~~l~KTIvFitHDLdEAlriG 232 (386)
T COG4175 163 ----------NELSGGMQQRVGLARALANDPDILLMDEAFSALDPLIRTEMQDELLELQAKLKKTIVFITHDLDEALRIG 232 (386)
T ss_pred ----------ccccchHHHHHHHHHHHccCCCEEEecCchhhcChHHHHHHHHHHHHHHHHhCCeEEEEecCHHHHHhcc
Confidence 58999999999999999999999999999999999998888776654 347999999999987 5779
Q ss_pred CEEEEEeCCeEEEccChHHHHhcC
Q 037346 547 DLILVIKDGKITQAGKYSDILNSG 570 (1156)
Q Consensus 547 d~i~~l~~G~i~~~g~~~~l~~~~ 570 (1156)
|||.+|++|+|++.|+++|+..+.
T Consensus 233 ~rIaimkdG~ivQ~Gtp~eIl~~P 256 (386)
T COG4175 233 DRIAIMKDGEIVQVGTPEEILLNP 256 (386)
T ss_pred ceEEEecCCeEEEeCCHHHHHcCc
Confidence 999999999999999999998654
|
|
| >PRK13644 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-37 Score=345.48 Aligned_cols=198 Identities=31% Similarity=0.457 Sum_probs=170.5
Q ss_pred EEEeeeEEEeCCCCCCCccccceEEeeCCeEEEEEcCCCCChHHHHHHHhCCCCCCCcEEEEcCe--------------E
Q 037346 358 IEIIDGSFSWDFSSPNPTLRNINLKVFHGMRVAVCGTVGSGKSSCLSCILGGVPKESGIIRLCGT--------------K 423 (1156)
Q Consensus 358 i~~~~~~f~~~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKSTll~~i~g~~~~~~G~i~~~g~--------------~ 423 (1156)
++++|++++|+. +.++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|. +
T Consensus 2 l~~~~l~~~~~~--~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i 79 (274)
T PRK13644 2 IRLENVSYSYPD--GTPALENINLVIKKGEYIGIIGKNGSGKSTLALHLNGLLRPQKGKVLVSGIDTGDFSKLQGIRKLV 79 (274)
T ss_pred EEEEEEEEEcCC--CCceeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEECCccccHHHHHhhe
Confidence 689999999952 346999999999999999999999999999999999999999999999872 6
Q ss_pred EEEecCCc--CCCccHHHHhhcCCC---CC----HHHHHHHHHHhCCchhhhhCCCCCccccccCCCCCCHHHHHHHHHH
Q 037346 424 AYVAQSPW--IQSGKIEENILFGKE---MD----RERYERVLEACSLKKDLEVLPFGDQTIIGERGINLSGGQKQRIQIA 494 (1156)
Q Consensus 424 ~~v~Q~~~--~~~~ti~eni~~~~~---~~----~~~~~~~~~~~~l~~~~~~~~~g~~t~v~~~g~~LSgGqkqRi~lA 494 (1156)
+|++|+|. +++.|++|||.++.. .+ .++.+++++.+++..... ..+..||||||||++||
T Consensus 80 ~~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~-----------~~~~~LS~G~~qrv~la 148 (274)
T PRK13644 80 GIVFQNPETQFVGRTVEEDLAFGPENLCLPPIEIRKRVDRALAEIGLEKYRH-----------RSPKTLSGGQGQCVALA 148 (274)
T ss_pred EEEEEChhhhcccchHHHHHHhhHHHcCCCHHHHHHHHHHHHHHCCCHHHhc-----------CCcccCCHHHHHHHHHH
Confidence 89999986 466799999988632 12 234556677777755433 34568999999999999
Q ss_pred HhhccCCCeeeeeCCCCCcCHHHHHHHHHHHHh--cCCCEEEEEccCCCccccCCEEEEEeCCeEEEccChHHHHh
Q 037346 495 RPLYQDADIFLLDDPFSPVDDHTGAHLFKFCWV--SSSKTVIYATHQVEFLPAADLILVIKDGKITQAGKYSDILN 568 (1156)
Q Consensus 495 ral~~~~~illlDep~s~lD~~~~~~i~~~~~~--~~~~tvi~vtH~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~ 568 (1156)
|||+.+|+++||||||++||+.++..+.+.+.. .+|.|+|++||+++.+..||+|++|++|++++.|+++++..
T Consensus 149 ral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~l~~~g~til~~tH~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~ 224 (274)
T PRK13644 149 GILTMEPECLIFDEVTSMLDPDSGIAVLERIKKLHEKGKTIVYITHNLEELHDADRIIVMDRGKIVLEGEPENVLS 224 (274)
T ss_pred HHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHhhCCEEEEEECCEEEEECCHHHHhc
Confidence 999999999999999999999999988876643 35899999999999987899999999999999999988764
|
|
| >PRK14273 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-37 Score=342.36 Aligned_cols=204 Identities=25% Similarity=0.340 Sum_probs=171.2
Q ss_pred ccEEEeeeEEEeCCCCCCCccccceEEeeCCeEEEEEcCCCCChHHHHHHHhCCCCC-----CCcEEEEcCe--------
Q 037346 356 TAIEIIDGSFSWDFSSPNPTLRNINLKVFHGMRVAVCGTVGSGKSSCLSCILGGVPK-----ESGIIRLCGT-------- 422 (1156)
Q Consensus 356 ~~i~~~~~~f~~~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKSTll~~i~g~~~~-----~~G~i~~~g~-------- 422 (1156)
..++++|++++|+ +.++|+|+||+|++||+++|+|+||||||||+++|+|+++| ++|+|.++|.
T Consensus 6 ~~l~~~~l~~~~~---~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~ 82 (254)
T PRK14273 6 AIIETENLNLFYT---DFKALNNINIKILKNSITALIGPSGCGKSTFLRTLNRMNDLVEGIKIEGNVIYEGKNIYSNNFD 82 (254)
T ss_pred ceEEEeeeEEEeC---CceeecceeeEEcCCCEEEEECCCCCCHHHHHHHHhccccCCcCCCCceEEEECCEeccccccc
Confidence 3699999999996 34699999999999999999999999999999999999997 4899998762
Q ss_pred -------EEEEecCCcCCCccHHHHhhcCCC----CC----HHHHHHHHHHhCCchhhhhCCCCCccccccCCCCCCHHH
Q 037346 423 -------KAYVAQSPWIQSGKIEENILFGKE----MD----RERYERVLEACSLKKDLEVLPFGDQTIIGERGINLSGGQ 487 (1156)
Q Consensus 423 -------~~~v~Q~~~~~~~ti~eni~~~~~----~~----~~~~~~~~~~~~l~~~~~~~~~g~~t~v~~~g~~LSgGq 487 (1156)
++|++|++.+++.|++|||.++.. .+ +++..++++.+++.+.+. .....++.+|||||
T Consensus 83 ~~~~~~~i~~v~q~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~-------~~~~~~~~~LSgG~ 155 (254)
T PRK14273 83 ILELRRKIGMVFQTPNPFLMSIYDNISYGPKIHGTKDKKKLDEIVEQSLKKSALWNEVK-------DKLNTNALSLSGGQ 155 (254)
T ss_pred HHHHhhceEEEeeccccccCcHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhCCchhhH-------HHHhCCcccCCHHH
Confidence 689999999888999999988632 11 233455666666643221 11234678999999
Q ss_pred HHHHHHHHhhccCCCeeeeeCCCCCcCHHHHHHHHHHHHh-cCCCEEEEEccCCCccc-cCCEEEEEeCCeEEEccChHH
Q 037346 488 KQRIQIARPLYQDADIFLLDDPFSPVDDHTGAHLFKFCWV-SSSKTVIYATHQVEFLP-AADLILVIKDGKITQAGKYSD 565 (1156)
Q Consensus 488 kqRi~lAral~~~~~illlDep~s~lD~~~~~~i~~~~~~-~~~~tvi~vtH~~~~~~-~~d~i~~l~~G~i~~~g~~~~ 565 (1156)
|||++|||||+.+|+++||||||++||+.++..+.+.+.. .+++|+|++||+++.+. .||+|++|++|++++.|++++
T Consensus 156 ~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tvii~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~ 235 (254)
T PRK14273 156 QQRLCIARTLAIEPNVILMDEPTSALDPISTGKIEELIINLKESYTIIIVTHNMQQAGRISDRTAFFLNGCIEEESSTDE 235 (254)
T ss_pred HHHHHHHHHHHcCCCEEEEeCCCcccCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHH
Confidence 9999999999999999999999999999999998876644 34689999999999875 599999999999999999998
Q ss_pred HHhc
Q 037346 566 ILNS 569 (1156)
Q Consensus 566 l~~~ 569 (1156)
+.+.
T Consensus 236 ~~~~ 239 (254)
T PRK14273 236 LFFN 239 (254)
T ss_pred HHhC
Confidence 8643
|
|
| >PRK13536 nodulation factor exporter subunit NodI; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-37 Score=354.14 Aligned_cols=200 Identities=26% Similarity=0.390 Sum_probs=171.1
Q ss_pred CccEEEeeeEEEeCCCCCCCccccceEEeeCCeEEEEEcCCCCChHHHHHHHhCCCCCCCcEEEEcCe------------
Q 037346 355 DTAIEIIDGSFSWDFSSPNPTLRNINLKVFHGMRVAVCGTVGSGKSSCLSCILGGVPKESGIIRLCGT------------ 422 (1156)
Q Consensus 355 ~~~i~~~~~~f~~~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKSTll~~i~g~~~~~~G~i~~~g~------------ 422 (1156)
...|+++|++++|+ +..+|+|+||+|++|++++|+||||||||||+++|+|+++|++|+|.++|.
T Consensus 39 ~~~i~i~nl~k~y~---~~~~l~~is~~i~~Gei~gLlGpNGaGKSTLl~~L~Gl~~p~~G~i~i~G~~~~~~~~~~~~~ 115 (340)
T PRK13536 39 TVAIDLAGVSKSYG---DKAVVNGLSFTVASGECFGLLGPNGAGKSTIARMILGMTSPDAGKITVLGVPVPARARLARAR 115 (340)
T ss_pred ceeEEEEEEEEEEC---CEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCceEEEECCEECCcchHHHhcc
Confidence 34699999999996 357999999999999999999999999999999999999999999999883
Q ss_pred EEEEecCCcCC-CccHHHHhhcCC---CCC----HHHHHHHHHHhCCchhhhhCCCCCccccccCCCCCCHHHHHHHHHH
Q 037346 423 KAYVAQSPWIQ-SGKIEENILFGK---EMD----RERYERVLEACSLKKDLEVLPFGDQTIIGERGINLSGGQKQRIQIA 494 (1156)
Q Consensus 423 ~~~v~Q~~~~~-~~ti~eni~~~~---~~~----~~~~~~~~~~~~l~~~~~~~~~g~~t~v~~~g~~LSgGqkqRi~lA 494 (1156)
++|+||++.++ ..|++||+.+.. ..+ .++.+++++.++|.+.. ..+..+||||||||++||
T Consensus 116 ig~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~L~~~~-----------~~~~~~LS~G~kqrv~lA 184 (340)
T PRK13536 116 IGVVPQFDNLDLEFTVRENLLVFGRYFGMSTREIEAVIPSLLEFARLESKA-----------DARVSDLSGGMKRRLTLA 184 (340)
T ss_pred EEEEeCCccCCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhh-----------CCChhhCCHHHHHHHHHH
Confidence 79999999886 569999997521 112 23344566666664432 244568999999999999
Q ss_pred HhhccCCCeeeeeCCCCCcCHHHHHHHHHHHHh--cCCCEEEEEccCCCccc-cCCEEEEEeCCeEEEccChHHHHh
Q 037346 495 RPLYQDADIFLLDDPFSPVDDHTGAHLFKFCWV--SSSKTVIYATHQVEFLP-AADLILVIKDGKITQAGKYSDILN 568 (1156)
Q Consensus 495 ral~~~~~illlDep~s~lD~~~~~~i~~~~~~--~~~~tvi~vtH~~~~~~-~~d~i~~l~~G~i~~~g~~~~l~~ 568 (1156)
|||+++|+++||||||++||+.++.++.+.+.. ..|+|+|++||+++.+. .||+|++|++|+++..|+++++..
T Consensus 185 ~aL~~~P~lLiLDEPt~gLD~~~r~~l~~~l~~l~~~g~tilisSH~l~e~~~~~d~i~il~~G~i~~~g~~~~l~~ 261 (340)
T PRK13536 185 RALINDPQLLILDEPTTGLDPHARHLIWERLRSLLARGKTILLTTHFMEEAERLCDRLCVLEAGRKIAEGRPHALID 261 (340)
T ss_pred HHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHh
Confidence 999999999999999999999999999887644 35899999999999986 599999999999999999998864
|
|
| >PRK13635 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-37 Score=345.29 Aligned_cols=201 Identities=29% Similarity=0.430 Sum_probs=173.8
Q ss_pred cEEEeeeEEEeCCCCCCCccccceEEeeCCeEEEEEcCCCCChHHHHHHHhCCCCCCCcEEEEcCe-------------E
Q 037346 357 AIEIIDGSFSWDFSSPNPTLRNINLKVFHGMRVAVCGTVGSGKSSCLSCILGGVPKESGIIRLCGT-------------K 423 (1156)
Q Consensus 357 ~i~~~~~~f~~~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKSTll~~i~g~~~~~~G~i~~~g~-------------~ 423 (1156)
.++++|+++.|+. .++++|+|+||+|++||+++|+||||||||||+++|+|.++|++|+|.++|. +
T Consensus 5 ~l~~~~l~~~~~~-~~~~~l~~vsl~i~~Ge~~~i~G~nGaGKSTLl~~i~G~~~p~~G~i~~~g~~i~~~~~~~~~~~i 83 (279)
T PRK13635 5 IIRVEHISFRYPD-AATYALKDVSFSVYEGEWVAIVGHNGSGKSTLAKLLNGLLLPEAGTITVGGMVLSEETVWDVRRQV 83 (279)
T ss_pred eEEEEEEEEEeCC-CCccceeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEECCcCcHHHHhhhe
Confidence 5899999999963 2356999999999999999999999999999999999999999999999983 6
Q ss_pred EEEecCC--cCCCccHHHHhhcCCC---CC----HHHHHHHHHHhCCchhhhhCCCCCccccccCCCCCCHHHHHHHHHH
Q 037346 424 AYVAQSP--WIQSGKIEENILFGKE---MD----RERYERVLEACSLKKDLEVLPFGDQTIIGERGINLSGGQKQRIQIA 494 (1156)
Q Consensus 424 ~~v~Q~~--~~~~~ti~eni~~~~~---~~----~~~~~~~~~~~~l~~~~~~~~~g~~t~v~~~g~~LSgGqkqRi~lA 494 (1156)
+|++|+| .+++.|++|||.++.. .. .++..++++.++|.+.+... ..+||||||||++||
T Consensus 84 ~~~~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~-----------~~~LS~G~~qrv~la 152 (279)
T PRK13635 84 GMVFQNPDNQFVGATVQDDVAFGLENIGVPREEMVERVDQALRQVGMEDFLNRE-----------PHRLSGGQKQRVAIA 152 (279)
T ss_pred EEEEeCHHHhcccccHHHHHhhhHhhCCCCHHHHHHHHHHHHHHcCChhhhhCC-----------cccCCHHHHHHHHHH
Confidence 8999998 4567899999988632 12 23466777888887655543 358999999999999
Q ss_pred HhhccCCCeeeeeCCCCCcCHHHHHHHHHHHHh--c-CCCEEEEEccCCCccccCCEEEEEeCCeEEEccChHHHHhc
Q 037346 495 RPLYQDADIFLLDDPFSPVDDHTGAHLFKFCWV--S-SSKTVIYATHQVEFLPAADLILVIKDGKITQAGKYSDILNS 569 (1156)
Q Consensus 495 ral~~~~~illlDep~s~lD~~~~~~i~~~~~~--~-~~~tvi~vtH~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~ 569 (1156)
|||+.+|+++||||||++||+.+++.+++.+.. . .|+|+|++||+++.+..||+|++|++|++++.|+.+++...
T Consensus 153 ral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~l~~~~~~tilivsH~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~ 230 (279)
T PRK13635 153 GVLALQPDIIILDEATSMLDPRGRREVLETVRQLKEQKGITVLSITHDLDEAAQADRVIVMNKGEILEEGTPEEIFKS 230 (279)
T ss_pred HHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHcCCCEEEEEecCHHHHHcCCEEEEEECCEEEEECCHHHHhcC
Confidence 999999999999999999999999999886644 2 37999999999998878999999999999999998887653
|
|
| >cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1) | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.5e-37 Score=329.62 Aligned_cols=188 Identities=27% Similarity=0.408 Sum_probs=162.9
Q ss_pred ccEEEeeeEEEeCCCCCCCccccceEEeeCCeEEEEEcCCCCChHHHHHHHhCCCCCCCcEEEEcC-------------e
Q 037346 356 TAIEIIDGSFSWDFSSPNPTLRNINLKVFHGMRVAVCGTVGSGKSSCLSCILGGVPKESGIIRLCG-------------T 422 (1156)
Q Consensus 356 ~~i~~~~~~f~~~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKSTll~~i~g~~~~~~G~i~~~g-------------~ 422 (1156)
+.++++|++++|+.. +.++++|+||+|++|++++|+|+||||||||+++|+|+++|++|+|.++| .
T Consensus 5 ~~l~~~~l~~~~~~~-~~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~ 83 (207)
T cd03369 5 GEIEVENLSVRYAPD-LPPVLKNVSFKVKAGEKIGIVGRTGAGKSTLILALFRFLEAEEGKIEIDGIDISTIPLEDLRSS 83 (207)
T ss_pred CeEEEEEEEEEeCCC-CcccccCceEEECCCCEEEEECCCCCCHHHHHHHHhcccCCCCCeEEECCEEhHHCCHHHHHhh
Confidence 468999999999632 24799999999999999999999999999999999999999999999987 3
Q ss_pred EEEEecCCcCCCccHHHHhhcCCCCCHHHHHHHHHHhCCchhhhhCCCCCccccccCCCCCCHHHHHHHHHHHhhccCCC
Q 037346 423 KAYVAQSPWIQSGKIEENILFGKEMDRERYERVLEACSLKKDLEVLPFGDQTIIGERGINLSGGQKQRIQIARPLYQDAD 502 (1156)
Q Consensus 423 ~~~v~Q~~~~~~~ti~eni~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~t~v~~~g~~LSgGqkqRi~lAral~~~~~ 502 (1156)
++|++|+|.++++|++||+.+...++.++..+.++ +++++.+|||||+||++||||++.+|+
T Consensus 84 i~~v~q~~~~~~~tv~~~l~~~~~~~~~~~~~~l~------------------~~~~~~~LS~G~~qrv~laral~~~p~ 145 (207)
T cd03369 84 LTIIPQDPTLFSGTIRSNLDPFDEYSDEEIYGALR------------------VSEGGLNLSQGQRQLLCLARALLKRPR 145 (207)
T ss_pred EEEEecCCcccCccHHHHhcccCCCCHHHHHHHhh------------------ccCCCCcCCHHHHHHHHHHHHHhhCCC
Confidence 79999999999999999998755444333322222 235678999999999999999999999
Q ss_pred eeeeeCCCCCcCHHHHHHHHHHHHh-cCCCEEEEEccCCCccccCCEEEEEeCCeEEEccC
Q 037346 503 IFLLDDPFSPVDDHTGAHLFKFCWV-SSSKTVIYATHQVEFLPAADLILVIKDGKITQAGK 562 (1156)
Q Consensus 503 illlDep~s~lD~~~~~~i~~~~~~-~~~~tvi~vtH~~~~~~~~d~i~~l~~G~i~~~g~ 562 (1156)
++||||||++||+.+.+.+.+.+.. .+++|+|++||+++.+..||++++|++|++.+.|+
T Consensus 146 llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~th~~~~~~~~d~v~~l~~g~i~~~g~ 206 (207)
T cd03369 146 VLVLDEATASIDYATDALIQKTIREEFTNSTILTIAHRLRTIIDYDKILVMDAGEVKEYDH 206 (207)
T ss_pred EEEEeCCcccCCHHHHHHHHHHHHHhcCCCEEEEEeCCHHHHhhCCEEEEEECCEEEecCC
Confidence 9999999999999999988776654 45789999999999887799999999999988775
|
NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate. |
| >cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-37 Score=339.28 Aligned_cols=200 Identities=27% Similarity=0.401 Sum_probs=168.7
Q ss_pred EEEeeeEEEeCCCC-CCCccccceEEeeCCeEEEEEcCCCCChHHHHHHHhCCCCCCCcEEEEcCe--------------
Q 037346 358 IEIIDGSFSWDFSS-PNPTLRNINLKVFHGMRVAVCGTVGSGKSSCLSCILGGVPKESGIIRLCGT-------------- 422 (1156)
Q Consensus 358 i~~~~~~f~~~~~~-~~~~l~~i~l~i~~g~~~~ivG~~GsGKSTll~~i~g~~~~~~G~i~~~g~-------------- 422 (1156)
++++|++++|+... ..++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.
T Consensus 2 i~~~~l~~~~~~~~~~~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 81 (233)
T cd03258 2 IELKNVSKVFGDTGGKVTALKDVSLSVPKGEIFGIIGRSGAGKSTLIRCINGLERPTSGSVLVDGTDLTLLSGKELRKAR 81 (233)
T ss_pred eEEecceEEccCCCCceeeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcccCCHHHHHHHH
Confidence 68999999996321 127999999999999999999999999999999999999999999999863
Q ss_pred --EEEEecCCcCCC-ccHHHHhhcCCC---CC----HHHHHHHHHHhCCchhhhhCCCCCccccccCCCCCCHHHHHHHH
Q 037346 423 --KAYVAQSPWIQS-GKIEENILFGKE---MD----RERYERVLEACSLKKDLEVLPFGDQTIIGERGINLSGGQKQRIQ 492 (1156)
Q Consensus 423 --~~~v~Q~~~~~~-~ti~eni~~~~~---~~----~~~~~~~~~~~~l~~~~~~~~~g~~t~v~~~g~~LSgGqkqRi~ 492 (1156)
++|+||+|.++. .|++||+.++.. .+ .++..+.++..++.+.++ ....+||||||||++
T Consensus 82 ~~i~~~~q~~~~~~~~t~~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-----------~~~~~LS~G~~qrv~ 150 (233)
T cd03258 82 RRIGMIFQHFNLLSSRTVFENVALPLEIAGVPKAEIEERVLELLELVGLEDKAD-----------AYPAQLSGGQKQRVG 150 (233)
T ss_pred hheEEEccCcccCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCChhhhh-----------cChhhCCHHHHHHHH
Confidence 689999999886 699999987521 22 234455666666654433 345689999999999
Q ss_pred HHHhhccCCCeeeeeCCCCCcCHHHHHHHHHHHHh--c-CCCEEEEEccCCCccc-cCCEEEEEeCCeEEEccChHHHHh
Q 037346 493 IARPLYQDADIFLLDDPFSPVDDHTGAHLFKFCWV--S-SSKTVIYATHQVEFLP-AADLILVIKDGKITQAGKYSDILN 568 (1156)
Q Consensus 493 lAral~~~~~illlDep~s~lD~~~~~~i~~~~~~--~-~~~tvi~vtH~~~~~~-~~d~i~~l~~G~i~~~g~~~~l~~ 568 (1156)
||||++.+|+++||||||++||+.+++.+.+.+.. . .|+|+|++||+++.+. .||++++|++|++++.|+++++.+
T Consensus 151 la~al~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~~~tvii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~ 230 (233)
T cd03258 151 IARALANNPKVLLCDEATSALDPETTQSILALLRDINRELGLTIVLITHEMEVVKRICDRVAVMEKGEVVEEGTVEEVFA 230 (233)
T ss_pred HHHHHhcCCCEEEecCCCCcCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEecCHHHHhc
Confidence 99999999999999999999999999988876643 2 3889999999999886 599999999999999998887653
|
Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-37 Score=335.39 Aligned_cols=188 Identities=31% Similarity=0.503 Sum_probs=159.4
Q ss_pred EEeeeEEEeCCCCCCCccccceEEeeCCeEEEEEcCCCCChHHHHHHHhCCCCCCCcEEEEcCe--------EEEEecCC
Q 037346 359 EIIDGSFSWDFSSPNPTLRNINLKVFHGMRVAVCGTVGSGKSSCLSCILGGVPKESGIIRLCGT--------KAYVAQSP 430 (1156)
Q Consensus 359 ~~~~~~f~~~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKSTll~~i~g~~~~~~G~i~~~g~--------~~~v~Q~~ 430 (1156)
+++|++++|+ ++++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|. ++|++|+|
T Consensus 1 ~~~~l~~~~~---~~~~l~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~i~~v~q~~ 77 (213)
T cd03235 1 EVEDLTVSYG---GHPVLEDVSFEVKPGEFLAIVGPNGAGKSTLLKAILGLLKPTSGSIRVFGKPLEKERKRIGYVPQRR 77 (213)
T ss_pred CcccceeEEC---CEEeeecceeEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCCCEEEECCccHHHHHhheEEecccc
Confidence 3679999996 346999999999999999999999999999999999999999999999983 89999998
Q ss_pred cC---CCccHHHHhhcCCCC-----------CHHHHHHHHHHhCCchhhhhCCCCCccccccCCCCCCHHHHHHHHHHHh
Q 037346 431 WI---QSGKIEENILFGKEM-----------DRERYERVLEACSLKKDLEVLPFGDQTIIGERGINLSGGQKQRIQIARP 496 (1156)
Q Consensus 431 ~~---~~~ti~eni~~~~~~-----------~~~~~~~~~~~~~l~~~~~~~~~g~~t~v~~~g~~LSgGqkqRi~lAra 496 (1156)
.+ ++.|++||+.++... .+++.+++++.+++.+..+ ....+||||||||++||||
T Consensus 78 ~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-----------~~~~~LSgG~~qrv~la~a 146 (213)
T cd03235 78 SIDRDFPISVRDVVLMGLYGHKGLFRRLSKADKAKVDEALERVGLSELAD-----------RQIGELSGGQQQRVLLARA 146 (213)
T ss_pred ccccCCCCcHHHHHHhccccccccccCCCHHHHHHHHHHHHHcCCHHHHh-----------CCcccCCHHHHHHHHHHHH
Confidence 76 457999999875321 1245666777777765443 3446899999999999999
Q ss_pred hccCCCeeeeeCCCCCcCHHHHHHHHHHHHh--cCCCEEEEEccCCCccc-cCCEEEEEeCCeEEEcc
Q 037346 497 LYQDADIFLLDDPFSPVDDHTGAHLFKFCWV--SSSKTVIYATHQVEFLP-AADLILVIKDGKITQAG 561 (1156)
Q Consensus 497 l~~~~~illlDep~s~lD~~~~~~i~~~~~~--~~~~tvi~vtH~~~~~~-~~d~i~~l~~G~i~~~g 561 (1156)
|+.+|+++||||||++||+.+++.+.+.+.. .+++|+|++||+++.+. .||+|++|++| +++.|
T Consensus 147 l~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tvi~~sH~~~~~~~~~d~i~~l~~~-~~~~g 213 (213)
T cd03235 147 LVQDPDLLLLDEPFAGVDPKTQEDIYELLRELRREGMTILVVTHDLGLVLEYFDRVLLLNRT-VVASG 213 (213)
T ss_pred HHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEcCc-EeecC
Confidence 9999999999999999999999988876644 36789999999999886 59999999886 55443
|
This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates. |
| >cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-37 Score=336.70 Aligned_cols=196 Identities=29% Similarity=0.449 Sum_probs=164.6
Q ss_pred EEEeeeEEEeCCCCCCCccccceEEeeCCeEEEEEcCCCCChHHHHHHHhCCCCCCCcEEEEcCe--------------E
Q 037346 358 IEIIDGSFSWDFSSPNPTLRNINLKVFHGMRVAVCGTVGSGKSSCLSCILGGVPKESGIIRLCGT--------------K 423 (1156)
Q Consensus 358 i~~~~~~f~~~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKSTll~~i~g~~~~~~G~i~~~g~--------------~ 423 (1156)
++++|++++|+ +.++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|. +
T Consensus 1 l~~~~l~~~~~---~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~i 77 (222)
T cd03224 1 LEVENLNAGYG---KSQILFGVSLTVPEGEIVALLGRNGAGKTTLLKTIMGLLPPRSGSIRFDGRDITGLPPHERARAGI 77 (222)
T ss_pred CEEeeEEeecC---CeeEeeeeeEEEcCCeEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcCCCCHHHHHhcCe
Confidence 46899999996 347999999999999999999999999999999999999999999999872 6
Q ss_pred EEEecCCcCCCc-cHHHHhhcCCCCC-----HHHHHHHHHHh-CCchhhhhCCCCCccccccCCCCCCHHHHHHHHHHHh
Q 037346 424 AYVAQSPWIQSG-KIEENILFGKEMD-----RERYERVLEAC-SLKKDLEVLPFGDQTIIGERGINLSGGQKQRIQIARP 496 (1156)
Q Consensus 424 ~~v~Q~~~~~~~-ti~eni~~~~~~~-----~~~~~~~~~~~-~l~~~~~~~~~g~~t~v~~~g~~LSgGqkqRi~lAra 496 (1156)
+|++|++.++.. |++||+.++.... .++..++++.+ ++.. ....++.+||||||||++||||
T Consensus 78 ~~~~q~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~l~~-----------~~~~~~~~LS~G~~qrv~lara 146 (222)
T cd03224 78 GYVPEGRRIFPELTVEENLLLGAYARRRAKRKARLERVYELFPRLKE-----------RRKQLAGTLSGGEQQMLAIARA 146 (222)
T ss_pred EEeccccccCCCCcHHHHHHHHhhhcCchhHHHHHHHHHHHHHhhhh-----------hhhCchhhCCHHHHHHHHHHHH
Confidence 899999988775 9999998764321 12233444443 2222 2245667899999999999999
Q ss_pred hccCCCeeeeeCCCCCcCHHHHHHHHHHHHh--cCCCEEEEEccCCCccc-cCCEEEEEeCCeEEEccChHHHH
Q 037346 497 LYQDADIFLLDDPFSPVDDHTGAHLFKFCWV--SSSKTVIYATHQVEFLP-AADLILVIKDGKITQAGKYSDIL 567 (1156)
Q Consensus 497 l~~~~~illlDep~s~lD~~~~~~i~~~~~~--~~~~tvi~vtH~~~~~~-~~d~i~~l~~G~i~~~g~~~~l~ 567 (1156)
++.+|+++||||||++||+.+++.+.+.+.. .+++|+|++||+++.+. .||+|++|++|++++.|+.+++.
T Consensus 147 l~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~ 220 (222)
T cd03224 147 LMSRPKLLLLDEPSEGLAPKIVEEIFEAIRELRDEGVTILLVEQNARFALEIADRAYVLERGRVVLEGTAAELL 220 (222)
T ss_pred HhcCCCEEEECCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhccEEEEeeCCeEEEeCCHHHHh
Confidence 9999999999999999999999988876644 35789999999999875 59999999999999999887764
|
The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. |
| >cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-37 Score=335.03 Aligned_cols=190 Identities=30% Similarity=0.424 Sum_probs=161.9
Q ss_pred EEEeeeEEEeCCCCCCCccccceEEeeCCeEEEEEcCCCCChHHHHHHHhCCCCCCCcEEEEcC-----------eEEEE
Q 037346 358 IEIIDGSFSWDFSSPNPTLRNINLKVFHGMRVAVCGTVGSGKSSCLSCILGGVPKESGIIRLCG-----------TKAYV 426 (1156)
Q Consensus 358 i~~~~~~f~~~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKSTll~~i~g~~~~~~G~i~~~g-----------~~~~v 426 (1156)
++++|++++|+ ++++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++| .++|+
T Consensus 1 i~~~~l~~~~~---~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~v~~~g~~~~~~~~~~~~i~~~ 77 (213)
T cd03301 1 VELENVTKRFG---NVTALDDLNLDIADGEFVVLLGPSGCGKTTTLRMIAGLEEPTSGRIYIGGRDVTDLPPKDRDIAMV 77 (213)
T ss_pred CEEEeeEEEEC---CeeeeeceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCCcccceEEEE
Confidence 46899999996 34799999999999999999999999999999999999999999999987 27999
Q ss_pred ecCCcCCC-ccHHHHhhcCCC---CC----HHHHHHHHHHhCCchhhhhCCCCCccccccCCCCCCHHHHHHHHHHHhhc
Q 037346 427 AQSPWIQS-GKIEENILFGKE---MD----RERYERVLEACSLKKDLEVLPFGDQTIIGERGINLSGGQKQRIQIARPLY 498 (1156)
Q Consensus 427 ~Q~~~~~~-~ti~eni~~~~~---~~----~~~~~~~~~~~~l~~~~~~~~~g~~t~v~~~g~~LSgGqkqRi~lAral~ 498 (1156)
+|++.++. .|++||+.++.. .. +++..++++.+++.+..+ ....+||||||||++||||++
T Consensus 78 ~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-----------~~~~~LS~G~~qr~~laral~ 146 (213)
T cd03301 78 FQNYALYPHMTVYDNIAFGLKLRKVPKDEIDERVREVAELLQIEHLLD-----------RKPKQLSGGQRQRVALGRAIV 146 (213)
T ss_pred ecChhhccCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHHHHh-----------CChhhCCHHHHHHHHHHHHHh
Confidence 99998875 599999987521 22 223455666666654433 345689999999999999999
Q ss_pred cCCCeeeeeCCCCCcCHHHHHHHHHHHHh---cCCCEEEEEccCCCccc-cCCEEEEEeCCeEEEcc
Q 037346 499 QDADIFLLDDPFSPVDDHTGAHLFKFCWV---SSSKTVIYATHQVEFLP-AADLILVIKDGKITQAG 561 (1156)
Q Consensus 499 ~~~~illlDep~s~lD~~~~~~i~~~~~~---~~~~tvi~vtH~~~~~~-~~d~i~~l~~G~i~~~g 561 (1156)
.+|+++||||||++||+.+++.+.+.+.. ..++|+|++||+++.+. .||+|++|++|++++.|
T Consensus 147 ~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~~sH~~~~~~~~~d~i~~l~~g~~~~~g 213 (213)
T cd03301 147 REPKVFLMDEPLSNLDAKLRVQMRAELKRLQQRLGTTTIYVTHDQVEAMTMADRIAVMNDGQIQQIG 213 (213)
T ss_pred cCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCeEEEEECCEEEecC
Confidence 99999999999999999999998876644 24899999999999876 49999999999998765
|
ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed. |
| >TIGR01288 nodI ATP-binding ABC transporter family nodulation protein NodI | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-37 Score=350.28 Aligned_cols=199 Identities=25% Similarity=0.396 Sum_probs=169.4
Q ss_pred ccEEEeeeEEEeCCCCCCCccccceEEeeCCeEEEEEcCCCCChHHHHHHHhCCCCCCCcEEEEcCe------------E
Q 037346 356 TAIEIIDGSFSWDFSSPNPTLRNINLKVFHGMRVAVCGTVGSGKSSCLSCILGGVPKESGIIRLCGT------------K 423 (1156)
Q Consensus 356 ~~i~~~~~~f~~~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKSTll~~i~g~~~~~~G~i~~~g~------------~ 423 (1156)
..++++|++++|+ +.++|+|+||+|++|++++|+||||||||||+++|+|+++|++|+|.++|. +
T Consensus 3 ~~i~~~~l~~~~~---~~~~l~~vsl~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~i 79 (303)
T TIGR01288 3 VAIDLVGVSKSYG---DKVVVNDLSFTIARGECFGLLGPNGAGKSTIARMLLGMISPDRGKITVLGEPVPSRARLARVAI 79 (303)
T ss_pred cEEEEEeEEEEeC---CeEEEcceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECcccHHHHhhcE
Confidence 3589999999996 357999999999999999999999999999999999999999999999873 7
Q ss_pred EEEecCCcCCC-ccHHHHhhcC-C--CCCH----HHHHHHHHHhCCchhhhhCCCCCccccccCCCCCCHHHHHHHHHHH
Q 037346 424 AYVAQSPWIQS-GKIEENILFG-K--EMDR----ERYERVLEACSLKKDLEVLPFGDQTIIGERGINLSGGQKQRIQIAR 495 (1156)
Q Consensus 424 ~~v~Q~~~~~~-~ti~eni~~~-~--~~~~----~~~~~~~~~~~l~~~~~~~~~g~~t~v~~~g~~LSgGqkqRi~lAr 495 (1156)
+|+||++.++. .|++||+.+. . ..+. ++.+++++.+++.+.. .....+||||||||++|||
T Consensus 80 ~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~l~~~~-----------~~~~~~LSgG~~qrv~la~ 148 (303)
T TIGR01288 80 GVVPQFDNLDPEFTVRENLLVFGRYFGMSTREIEAVIPSLLEFARLESKA-----------DVRVALLSGGMKRRLTLAR 148 (303)
T ss_pred EEEeccccCCcCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCChhHh-----------cCchhhCCHHHHHHHHHHH
Confidence 99999998774 6999999742 1 1222 2344566666664432 2345689999999999999
Q ss_pred hhccCCCeeeeeCCCCCcCHHHHHHHHHHHHh--cCCCEEEEEccCCCccc-cCCEEEEEeCCeEEEccChHHHHh
Q 037346 496 PLYQDADIFLLDDPFSPVDDHTGAHLFKFCWV--SSSKTVIYATHQVEFLP-AADLILVIKDGKITQAGKYSDILN 568 (1156)
Q Consensus 496 al~~~~~illlDep~s~lD~~~~~~i~~~~~~--~~~~tvi~vtH~~~~~~-~~d~i~~l~~G~i~~~g~~~~l~~ 568 (1156)
||+.+|+++||||||++||+.+++.+.+.+.. .+|+|+|++||+++.+. .||+|++|++|+++..|+++++..
T Consensus 149 al~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~~g~til~~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 224 (303)
T TIGR01288 149 ALINDPQLLILDEPTTGLDPHARHLIWERLRSLLARGKTILLTTHFMEEAERLCDRLCVLESGRKIAEGRPHALID 224 (303)
T ss_pred HHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHh
Confidence 99999999999999999999999998876644 35899999999999986 599999999999999999988764
|
This model does not recognize the highly divergent NodI from Azorhizobium caulinodans. |
| >COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-37 Score=345.79 Aligned_cols=199 Identities=27% Similarity=0.424 Sum_probs=174.5
Q ss_pred cEEEeeeEEEeCCCCCCCccccceEEeeCCeEEEEEcCCCCChHHHHHHHhCCCCCCCcEEEEcC------------eEE
Q 037346 357 AIEIIDGSFSWDFSSPNPTLRNINLKVFHGMRVAVCGTVGSGKSSCLSCILGGVPKESGIIRLCG------------TKA 424 (1156)
Q Consensus 357 ~i~~~~~~f~~~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKSTll~~i~g~~~~~~G~i~~~g------------~~~ 424 (1156)
.++++|+++.|+. ++.+|+|+||+|++|+++|++||||||||||+++|+|++.|++|+|.++| ++|
T Consensus 4 ~i~~~~l~k~~~~--~~~~l~~vs~~i~~Gei~gllG~NGAGKTTllk~l~gl~~p~~G~i~i~G~~~~~~~~~~~~~ig 81 (293)
T COG1131 4 VIEVRNLTKKYGG--DKTALDGVSFEVEPGEIFGLLGPNGAGKTTLLKILAGLLKPTSGEILVLGYDVVKEPAKVRRRIG 81 (293)
T ss_pred eeeecceEEEeCC--CCEEEeceeEEEcCCeEEEEECCCCCCHHHHHHHHhCCcCCCceEEEEcCEeCccCHHHHHhheE
Confidence 4788999999962 36899999999999999999999999999999999999999999999998 379
Q ss_pred EEecCCcCCC-ccHHHHhhcCC-----C--CCHHHHHHHHHHhCCchhhhhCCCCCccccccCCCCCCHHHHHHHHHHHh
Q 037346 425 YVAQSPWIQS-GKIEENILFGK-----E--MDRERYERVLEACSLKKDLEVLPFGDQTIIGERGINLSGGQKQRIQIARP 496 (1156)
Q Consensus 425 ~v~Q~~~~~~-~ti~eni~~~~-----~--~~~~~~~~~~~~~~l~~~~~~~~~g~~t~v~~~g~~LSgGqkqRi~lAra 496 (1156)
|+||+|.++. .|++||+.|.. + .++++.+++++..+|.+.. ..+..+||+|||||++||+|
T Consensus 82 y~~~~~~~~~~lT~~e~l~~~~~l~~~~~~~~~~~~~~~l~~~~L~~~~-----------~~~~~~lS~G~kqrl~ia~a 150 (293)
T COG1131 82 YVPQEPSLYPELTVRENLEFFARLYGLSKEEAEERIEELLELFGLEDKA-----------NKKVRTLSGGMKQRLSIALA 150 (293)
T ss_pred EEccCCCCCccccHHHHHHHHHHHhCCChhHHHHHHHHHHHHcCCchhh-----------CcchhhcCHHHHHHHHHHHH
Confidence 9999998765 59999998732 2 3356788999999987622 24457899999999999999
Q ss_pred hccCCCeeeeeCCCCCcCHHHHHHHHHHHHh--cCC-CEEEEEccCCCcccc-CCEEEEEeCCeEEEccChHHHHh
Q 037346 497 LYQDADIFLLDDPFSPVDDHTGAHLFKFCWV--SSS-KTVIYATHQVEFLPA-ADLILVIKDGKITQAGKYSDILN 568 (1156)
Q Consensus 497 l~~~~~illlDep~s~lD~~~~~~i~~~~~~--~~~-~tvi~vtH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~~ 568 (1156)
|.++|++|||||||++|||..+..+.+.+.. .+| +||+++||.++.+.. ||+|++|++|+++..|+.+++..
T Consensus 151 L~~~P~lliLDEPt~GLDp~~~~~~~~~l~~l~~~g~~tvlissH~l~e~~~~~d~v~il~~G~~~~~g~~~~l~~ 226 (293)
T COG1131 151 LLHDPELLILDEPTSGLDPESRREIWELLRELAKEGGVTILLSTHILEEAEELCDRVIILNDGKIIAEGTPEELKE 226 (293)
T ss_pred HhcCCCEEEECCCCcCCCHHHHHHHHHHHHHHHhCCCcEEEEeCCcHHHHHHhCCEEEEEeCCEEEEeCCHHHHHH
Confidence 9999999999999999999999999887644 345 799999999999875 99999999999999999888754
|
|
| >cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-37 Score=338.44 Aligned_cols=197 Identities=28% Similarity=0.412 Sum_probs=166.7
Q ss_pred EEEeeeEEEeCCCCCCCccccceEEeeCCeEEEEEcCCCCChHHHHHHHhCCCCCCCcEEEEcCe--------------E
Q 037346 358 IEIIDGSFSWDFSSPNPTLRNINLKVFHGMRVAVCGTVGSGKSSCLSCILGGVPKESGIIRLCGT--------------K 423 (1156)
Q Consensus 358 i~~~~~~f~~~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKSTll~~i~g~~~~~~G~i~~~g~--------------~ 423 (1156)
++++|+++.|+ ++++|+|+||++++|++++|+||||||||||+++|+|.++|++|+|.++|. +
T Consensus 1 l~~~~l~~~~~---~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i 77 (232)
T cd03218 1 LRAENLSKRYG---KRKVVNGVSLSVKQGEIVGLLGPNGAGKTTTFYMIVGLVKPDSGKILLDGQDITKLPMHKRARLGI 77 (232)
T ss_pred CeEEEEEEEeC---CEEeeccceeEecCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEecccCCHhHHHhccE
Confidence 46899999996 346999999999999999999999999999999999999999999999872 6
Q ss_pred EEEecCCcCCCc-cHHHHhhcCCC---CC----HHHHHHHHHHhCCchhhhhCCCCCccccccCCCCCCHHHHHHHHHHH
Q 037346 424 AYVAQSPWIQSG-KIEENILFGKE---MD----RERYERVLEACSLKKDLEVLPFGDQTIIGERGINLSGGQKQRIQIAR 495 (1156)
Q Consensus 424 ~~v~Q~~~~~~~-ti~eni~~~~~---~~----~~~~~~~~~~~~l~~~~~~~~~g~~t~v~~~g~~LSgGqkqRi~lAr 495 (1156)
+|++|++.++.. |++||+.++.. .. .++.++.++.+++.+. ..+...+||||||||++|||
T Consensus 78 ~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-----------~~~~~~~LS~G~~qrl~la~ 146 (232)
T cd03218 78 GYLPQEASIFRKLTVEENILAVLEIRGLSKKEREEKLEELLEEFHITHL-----------RKSKASSLSGGERRRVEIAR 146 (232)
T ss_pred EEecCCccccccCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhh-----------hhCChhhCCHHHHHHHHHHH
Confidence 899999988775 99999987532 11 1234455666655432 23556789999999999999
Q ss_pred hhccCCCeeeeeCCCCCcCHHHHHHHHHHHHh--cCCCEEEEEccCCCccc-cCCEEEEEeCCeEEEccChHHHHh
Q 037346 496 PLYQDADIFLLDDPFSPVDDHTGAHLFKFCWV--SSSKTVIYATHQVEFLP-AADLILVIKDGKITQAGKYSDILN 568 (1156)
Q Consensus 496 al~~~~~illlDep~s~lD~~~~~~i~~~~~~--~~~~tvi~vtH~~~~~~-~~d~i~~l~~G~i~~~g~~~~l~~ 568 (1156)
|++.+|+++||||||++||+.+++.+.+.+.. ..++|+|++||+++.+. .||+|++|++|++++.|+++++..
T Consensus 147 al~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~ 222 (232)
T cd03218 147 ALATNPKFLLLDEPFAGVDPIAVQDIQKIIKILKDRGIGVLITDHNVRETLSITDRAYIIYEGKVLAEGTPEEIAA 222 (232)
T ss_pred HHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCeEEEEeCHHHhhc
Confidence 99999999999999999999999988876543 35889999999998765 599999999999999999887653
|
The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium. |
| >cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-37 Score=346.34 Aligned_cols=197 Identities=29% Similarity=0.380 Sum_probs=167.9
Q ss_pred EEeeeEEEeCCCCCCCccccceEEeeCCeEEEEEcCCCCChHHHHHHHhCCCCCCCcEEEEcC-----------------
Q 037346 359 EIIDGSFSWDFSSPNPTLRNINLKVFHGMRVAVCGTVGSGKSSCLSCILGGVPKESGIIRLCG----------------- 421 (1156)
Q Consensus 359 ~~~~~~f~~~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKSTll~~i~g~~~~~~G~i~~~g----------------- 421 (1156)
.++|+++.|+ +.++|+|+||+|++|++++|+||||||||||+++|+|+++|++|+|.++|
T Consensus 26 ~~~~~~~~~~---~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~L~Gl~~p~~G~i~i~g~~~~~~~~~~~~~~~~~ 102 (269)
T cd03294 26 SKEEILKKTG---QTVGVNDVSLDVREGEIFVIMGLSGSGKSTLLRCINRLIEPTSGKVLIDGQDIAAMSRKELRELRRK 102 (269)
T ss_pred hhhhhhhhcC---CceEeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEccccChhhhhhhhcC
Confidence 4567777775 45789999999999999999999999999999999999999999999976
Q ss_pred eEEEEecCCcCCC-ccHHHHhhcCCC---CC----HHHHHHHHHHhCCchhhhhCCCCCccccccCCCCCCHHHHHHHHH
Q 037346 422 TKAYVAQSPWIQS-GKIEENILFGKE---MD----RERYERVLEACSLKKDLEVLPFGDQTIIGERGINLSGGQKQRIQI 493 (1156)
Q Consensus 422 ~~~~v~Q~~~~~~-~ti~eni~~~~~---~~----~~~~~~~~~~~~l~~~~~~~~~g~~t~v~~~g~~LSgGqkqRi~l 493 (1156)
+++|++|++.++. .|++||+.++.. .+ .+++.++++.+++.+.+... ..+||||||||++|
T Consensus 103 ~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-----------~~~LS~Gq~qrv~l 171 (269)
T cd03294 103 KISMVFQSFALLPHRTVLENVAFGLEVQGVPRAEREERAAEALELVGLEGWEHKY-----------PDELSGGMQQRVGL 171 (269)
T ss_pred cEEEEecCcccCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHhHhhCC-----------cccCCHHHHHHHHH
Confidence 2789999998874 699999987521 11 24556777778876555433 35899999999999
Q ss_pred HHhhccCCCeeeeeCCCCCcCHHHHHHHHHHHHh---cCCCEEEEEccCCCccc-cCCEEEEEeCCeEEEccChHHHHhc
Q 037346 494 ARPLYQDADIFLLDDPFSPVDDHTGAHLFKFCWV---SSSKTVIYATHQVEFLP-AADLILVIKDGKITQAGKYSDILNS 569 (1156)
Q Consensus 494 Aral~~~~~illlDep~s~lD~~~~~~i~~~~~~---~~~~tvi~vtH~~~~~~-~~d~i~~l~~G~i~~~g~~~~l~~~ 569 (1156)
|||++.+|+++||||||++||+.+++.+.+.+.. ..|+|+|++||+++.+. .||++++|++|++++.|+++++.+.
T Consensus 172 Aral~~~p~illLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiii~tH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~ 251 (269)
T cd03294 172 ARALAVDPDILLMDEAFSALDPLIRREMQDELLRLQAELQKTIVFITHDLDEALRLGDRIAIMKDGRLVQVGTPEEILTN 251 (269)
T ss_pred HHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEECCEEEEeCCHHHHHhC
Confidence 9999999999999999999999999998876643 24799999999999875 5999999999999999999988753
|
This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK14257 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-37 Score=353.45 Aligned_cols=202 Identities=23% Similarity=0.352 Sum_probs=171.7
Q ss_pred CCCCCCCeEEEEEEEEEEcCCC---------------CceeeCCCCCCHHHHHHHHhhccc-----CCCceEEEcCeeCC
Q 037346 940 NSRPSHGEVNIRHLQVRYAPNL---------------PLVLRGRTGSGKSTLIQTLFRIVE-----STAGHILIDGKDIS 999 (1156)
Q Consensus 940 ~~~p~~g~I~~~~Vsf~Y~~~~---------------~~vL~G~SGsGKSTL~~lL~rl~~-----p~~G~I~idG~di~ 999 (1156)
..||..+.|+|+||+++|+++. .++|.||||||||||+++|+|+++ |++|+|.|||+|+.
T Consensus 73 ~~~~~~~~i~~~nls~~y~~~~~~~L~~is~~I~~Ge~v~IvG~~GsGKSTLl~~L~g~~~~~~~~p~~G~I~idG~~i~ 152 (329)
T PRK14257 73 EDFNHANVFEIRNFNFWYMNRTKHVLHDLNLDIKRNKVTAFIGPSGCGKSTFLRNLNQLNDLIEGTSHEGEIYFLGTNTR 152 (329)
T ss_pred CCCCcCceEEEEeeEEEecCCCceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEcc
Confidence 3589889999999999996432 235669999999999999999997 57999999999997
Q ss_pred --CCChHHHhhcCeeeccccccccccchhccCCCC---CCCHHH-----HHHHHHHcCCChHH----HhhcCCcccc---
Q 037346 1000 --LIGLHDLRTRLSIIPQDPTMFEGTTRSNLDPLE---EHADEQ-----IWEALDKCQLGDEV----RKKKGKLDSQ--- 1062 (1156)
Q Consensus 1000 --~i~~~~LR~~i~~VpQdp~LF~gTIr~Nl~~~~---~~~dee-----i~~al~~~~l~~~i----~~lp~gl~s~--- 1062 (1156)
++++..+|++++||||+|.+|++|+++||+++. ..++++ +.++++.+++++.+ ...+..|..+
T Consensus 153 ~~~~~~~~lr~~i~~v~q~~~~~~~ti~eNi~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~l~~~~~~~~~~LSgGqkq 232 (329)
T PRK14257 153 SKKISSLELRTRIGMVFQKPTPFEMSIFDNVAYGPRNNGINDRKILEKIVEKSLKSAALWDEVKDDLDKAGNALSGGQQQ 232 (329)
T ss_pred ccccchHhhhccEEEEecCCccCCCcHHHHHHhHHHhcCCChHHHHHHHHHHHHHHcCCcchhhhhhhCCcccCCHHHHH
Confidence 456678999999999999999999999998532 234433 56788999986443 2323333322
Q ss_pred ----ccccccCCCEEEEecCCcCCCHHHHHHHHHHHHHhcCCceEEEeecCcccccc-cCEEEEEeCcEEeeecChhHHh
Q 037346 1063 ----GRVLLKKSKVLVLDEATASVDTATDNQIQQTLRQHFSDCTVVTIAHRITSVLD-SAMVLLLNHGLIKEYDSPTKLL 1137 (1156)
Q Consensus 1063 ----ARALLr~~~ILiLDEaTS~LD~~te~~I~~~l~~~~~~~TvI~IaHrl~ti~~-~D~I~Vl~~G~IvE~G~~~eLl 1137 (1156)
|||++++|+|||||||||+||+++.+.+++.|+++++++|+|+|||+++++.+ ||||+||++|+|+|.|+|++++
T Consensus 233 Rl~LARAl~~~p~IlLLDEPts~LD~~~~~~i~~~i~~l~~~~Tii~iTH~l~~i~~~~Driivl~~G~i~e~g~~~~l~ 312 (329)
T PRK14257 233 RLCIARAIALEPEVLLMDEPTSALDPIATAKIEELILELKKKYSIIIVTHSMAQAQRISDETVFFYQGWIEEAGETKTIF 312 (329)
T ss_pred HHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHh
Confidence 89999999999999999999999999999999999889999999999999988 9999999999999999999999
Q ss_pred cCCC
Q 037346 1138 ENKS 1141 (1156)
Q Consensus 1138 ~~~~ 1141 (1156)
.++.
T Consensus 313 ~~~~ 316 (329)
T PRK14257 313 IHPK 316 (329)
T ss_pred cCCC
Confidence 7654
|
|
| >PRK13636 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-37 Score=346.03 Aligned_cols=200 Identities=25% Similarity=0.410 Sum_probs=172.5
Q ss_pred cEEEeeeEEEeCCCCCCCccccceEEeeCCeEEEEEcCCCCChHHHHHHHhCCCCCCCcEEEEcCe--------------
Q 037346 357 AIEIIDGSFSWDFSSPNPTLRNINLKVFHGMRVAVCGTVGSGKSSCLSCILGGVPKESGIIRLCGT-------------- 422 (1156)
Q Consensus 357 ~i~~~~~~f~~~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKSTll~~i~g~~~~~~G~i~~~g~-------------- 422 (1156)
.++++|++++|+. ++++|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.++|.
T Consensus 5 ~l~~~~l~~~~~~--~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~i~Gl~~p~~G~i~i~g~~~~~~~~~~~~~~~ 82 (283)
T PRK13636 5 ILKVEELNYNYSD--GTHALKGININIKKGEVTAILGGNGAGKSTLFQNLNGILKPSSGRILFDGKPIDYSRKGLMKLRE 82 (283)
T ss_pred eEEEEeEEEEeCC--CCeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCccEEEECCEECCCCcchHHHHHh
Confidence 5899999999962 357999999999999999999999999999999999999999999999873
Q ss_pred -EEEEecCC--cCCCccHHHHhhcCCC---CC----HHHHHHHHHHhCCchhhhhCCCCCccccccCCCCCCHHHHHHHH
Q 037346 423 -KAYVAQSP--WIQSGKIEENILFGKE---MD----RERYERVLEACSLKKDLEVLPFGDQTIIGERGINLSGGQKQRIQ 492 (1156)
Q Consensus 423 -~~~v~Q~~--~~~~~ti~eni~~~~~---~~----~~~~~~~~~~~~l~~~~~~~~~g~~t~v~~~g~~LSgGqkqRi~ 492 (1156)
++|++|+| .+++.|++||+.++.. .. .++.+++++.++|.... ...+.+||||||||++
T Consensus 83 ~ig~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~-----------~~~~~~LS~G~~qrl~ 151 (283)
T PRK13636 83 SVGMVFQDPDNQLFSASVYQDVSFGAVNLKLPEDEVRKRVDNALKRTGIEHLK-----------DKPTHCLSFGQKKRVA 151 (283)
T ss_pred hEEEEecCcchhhccccHHHHHHhHHHHcCCCHHHHHHHHHHHHHHCCChhhh-----------hCCcccCCHHHHHHHH
Confidence 68999998 4678899999987531 12 23456677777775433 3456799999999999
Q ss_pred HHHhhccCCCeeeeeCCCCCcCHHHHHHHHHHHHh--c-CCCEEEEEccCCCccc-cCCEEEEEeCCeEEEccChHHHHh
Q 037346 493 IARPLYQDADIFLLDDPFSPVDDHTGAHLFKFCWV--S-SSKTVIYATHQVEFLP-AADLILVIKDGKITQAGKYSDILN 568 (1156)
Q Consensus 493 lAral~~~~~illlDep~s~lD~~~~~~i~~~~~~--~-~~~tvi~vtH~~~~~~-~~d~i~~l~~G~i~~~g~~~~l~~ 568 (1156)
|||||+.+|+++||||||++||+.++..+.+.+.. . .|+|+|++||+++.+. .||++++|++|++++.|+++++..
T Consensus 152 laraL~~~p~lLilDEPt~gLD~~~~~~l~~~l~~l~~~~g~tillvsH~~~~~~~~~dri~~l~~G~i~~~g~~~~~~~ 231 (283)
T PRK13636 152 IAGVLVMEPKVLVLDEPTAGLDPMGVSEIMKLLVEMQKELGLTIIIATHDIDIVPLYCDNVFVMKEGRVILQGNPKEVFA 231 (283)
T ss_pred HHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEeCCHHHHhc
Confidence 99999999999999999999999999988776643 2 3899999999999986 599999999999999999998865
Q ss_pred c
Q 037346 569 S 569 (1156)
Q Consensus 569 ~ 569 (1156)
.
T Consensus 232 ~ 232 (283)
T PRK13636 232 E 232 (283)
T ss_pred C
Confidence 3
|
|
| >PRK13641 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-37 Score=346.62 Aligned_cols=202 Identities=26% Similarity=0.420 Sum_probs=170.4
Q ss_pred cEEEeeeEEEeCCCC--CCCccccceEEeeCCeEEEEEcCCCCChHHHHHHHhCCCCCCCcEEEEcCe------------
Q 037346 357 AIEIIDGSFSWDFSS--PNPTLRNINLKVFHGMRVAVCGTVGSGKSSCLSCILGGVPKESGIIRLCGT------------ 422 (1156)
Q Consensus 357 ~i~~~~~~f~~~~~~--~~~~l~~i~l~i~~g~~~~ivG~~GsGKSTll~~i~g~~~~~~G~i~~~g~------------ 422 (1156)
.++++|++++|+... .+++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.
T Consensus 2 ~i~~~~l~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~iiG~NGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~ 81 (287)
T PRK13641 2 SIKFENVDYIYSPGTPMEKKGLDNISFELEEGSFVALVGHTGSGKSTLMQHFNALLKPSSGTITIAGYHITPETGNKNLK 81 (287)
T ss_pred EEEEEEEEEEcCCCCCccccceeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEECccccccchHH
Confidence 478999999996321 246999999999999999999999999999999999999999999999873
Q ss_pred -----EEEEecCC--cCCCccHHHHhhcCCC---CC----HHHHHHHHHHhCCchhhhhCCCCCccccccCCCCCCHHHH
Q 037346 423 -----KAYVAQSP--WIQSGKIEENILFGKE---MD----RERYERVLEACSLKKDLEVLPFGDQTIIGERGINLSGGQK 488 (1156)
Q Consensus 423 -----~~~v~Q~~--~~~~~ti~eni~~~~~---~~----~~~~~~~~~~~~l~~~~~~~~~g~~t~v~~~g~~LSgGqk 488 (1156)
++|++|+| .++..|++||+.++.. .. .++.+++++.+++.... ......+||||||
T Consensus 82 ~~~~~ig~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~----------~~~~~~~LSgGq~ 151 (287)
T PRK13641 82 KLRKKVSLVFQFPEAQLFENTVLKDVEFGPKNFGFSEDEAKEKALKWLKKVGLSEDL----------ISKSPFELSGGQM 151 (287)
T ss_pred HHHhceEEEEeChhhhhccchHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCChhH----------hhCCcccCCHHHH
Confidence 58999998 4677899999987531 22 23456667777775222 1344578999999
Q ss_pred HHHHHHHhhccCCCeeeeeCCCCCcCHHHHHHHHHHHHh--cCCCEEEEEccCCCccc-cCCEEEEEeCCeEEEccChHH
Q 037346 489 QRIQIARPLYQDADIFLLDDPFSPVDDHTGAHLFKFCWV--SSSKTVIYATHQVEFLP-AADLILVIKDGKITQAGKYSD 565 (1156)
Q Consensus 489 qRi~lAral~~~~~illlDep~s~lD~~~~~~i~~~~~~--~~~~tvi~vtH~~~~~~-~~d~i~~l~~G~i~~~g~~~~ 565 (1156)
||++|||||+.+|+++||||||++||+.+++.+.+.+.. .+|.|+|++||+++.+. .||++++|++|++++.|++++
T Consensus 152 qrl~laral~~~p~lLlLDEPt~gLD~~~~~~l~~~l~~l~~~g~tvlivsH~~~~~~~~~d~v~~l~~G~i~~~g~~~~ 231 (287)
T PRK13641 152 RRVAIAGVMAYEPEILCLDEPAAGLDPEGRKEMMQLFKDYQKAGHTVILVTHNMDDVAEYADDVLVLEHGKLIKHASPKE 231 (287)
T ss_pred HHHHHHHHHHcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHH
Confidence 999999999999999999999999999999988776543 35899999999999875 599999999999999999988
Q ss_pred HHh
Q 037346 566 ILN 568 (1156)
Q Consensus 566 l~~ 568 (1156)
+..
T Consensus 232 ~~~ 234 (287)
T PRK13641 232 IFS 234 (287)
T ss_pred Hhc
Confidence 764
|
|
| >COG4615 PvdE ABC-type siderophore export system, fused ATPase and permease components [Secondary metabolites biosynthesis, transport, and catabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.6e-35 Score=313.44 Aligned_cols=471 Identities=17% Similarity=0.159 Sum_probs=303.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcc-----cc-hhhHH--HHHHHHHHHHHHHHHHHHH
Q 037346 72 AKVLFFSAWQEILFIAILALLYTLATYVGPYLIDNFVQYLNGRQAF-----EY-EGYVL--CLSERHWFFQVQQFGIRFR 143 (1156)
Q Consensus 72 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~p~ll~~~i~~~~~~~~~-----~~-~g~~l--~~~~~~~~~~~~~~~~~~r 143 (1156)
...++|.+++.++..+.+.++..+.... ++..+-+++...... .+ .|.++ .++..........+|.++-
T Consensus 4 ll~llr~nr~~~i~~~a~s~a~g~~g~~---lLa~in~al~e~~~~~~~~l~~f~~llllf~~ss~is~lg~t~~gq~~I 80 (546)
T COG4615 4 LLLLLRQNRWPFISVMALSLASGALGIG---LLAFINQALIETADTSLLVLPEFLGLLLLFMVSSLISQLGLTTLGQHFI 80 (546)
T ss_pred HHHHhcccccHHHHHHHHHHHHHHHHHH---HHHHHHHHHHhhcccceeeHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4457888888888877777766654443 333333443322111 12 22222 1111112223445566666
Q ss_pred HHHHHHHHHHHhcCCccccCCCCHHHHHHHHHHHHHH--------------------HHHHHHHHHHHHHHHHHHHHHHH
Q 037346 144 ATLFAMIYNKGLTLSGQAKQGNTSGEIINLIAVDAER--------------------ALLILYKKLGLASIATLLATAIV 203 (1156)
Q Consensus 144 ~~l~~~i~~k~l~l~~~~~~~~~~g~i~nl~s~D~~~--------------------~~~ll~~~lg~~~l~~~~~~~~~ 203 (1156)
..++..+-+|++.-+....++.+++.++..++.|+.. +...|++.-+.+....++++++.
T Consensus 81 ~klr~~~~~kil~tplerier~~~~rlla~L~~Dvr~ISf~~s~lp~~~qa~il~l~s~aYLayLSp~mf~l~vV~ivv~ 160 (546)
T COG4615 81 YKLRSEFIKKILDTPLERIERLGSARLLAGLTSDVRNISFAFSRLPELVQAIILTLGSAAYLAYLSPKMFLLTVVWIVVT 160 (546)
T ss_pred HHHHHHHHHHHhcCHHHHHHHhcccchhhhhcccccceeehHhhhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 7777778888888888778888999999999999976 12222333333333333334444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH---HH---H-HHHHH-HHHHHHHH-HHHHHHH
Q 037346 204 MLANFPLGRLREKFQDKFMETKDRRIKATSEILRNMRILKLQGWELKK---NE---T-AWLKK-SVYTEAMI-SFFCWGA 274 (1156)
Q Consensus 204 ~~~~~~~~~~~~~~~~~~~~~~d~r~~~~~e~l~~i~~IK~~~~e~r~---~e---~-~~~~~-~~~~~~~~-~~~~~~~ 274 (1156)
+..+........+......+.-|+-.+..+.++.|-|..+++.--.+. .+ - ...++ ..+...+. ....|..
T Consensus 161 ~~~~~~~m~rv~k~~~aare~ed~Lq~~y~~il~G~KEL~l~r~R~~~~h~~~~~~~a~~~r~~~~~~n~f~~la~~~~n 240 (546)
T COG4615 161 IWGGFVLMARVYKHMAAARETEDKLQNDYQTILEGRKELTLNRERAEYVHNNLYIPDAQEYRHHIIRANTFHLLAVNWSN 240 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhcchhhheechHHHHHHHhhhcCcchHHHHhhhhhhhHHHHHHHHHHH
Confidence 444444433444444555556667778888999999998876532000 00 0 01111 11111111 1122333
Q ss_pred HHHHHHHHHHHHHHhCCCc-cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCccccccCCCCC
Q 037346 275 PTFVSVVTFGSCILLGIPL-ESGMILSALTTFKILQEPIYYLPESISMMIQAKVPLDRIASFLCLEGLQTDVLEKMPRGN 353 (1156)
Q Consensus 275 ~~~~~~~~f~~~~~~~~~l-t~~~~ft~l~~~~~l~~pl~~l~~~~~~~~~a~~s~~Ri~~fl~~~~~~~~~~~~~~~~~ 353 (1156)
..+...+....|+...-.. +...+.|+...+..++.|+.++...++.+..|.++++||.++=..|+...-... .+. +
T Consensus 241 i~l~~lIGlvf~lal~~~w~st~~a~tivlvlLflr~pL~s~vgilP~l~~AqvA~~kiakle~~~~~a~~~~~-q~~-p 318 (546)
T COG4615 241 IMLLGLIGLVFWLALSLGWASTNVAATIVLVLLFLRTPLLSAVGILPTLLTAQVAFNKIAKLELAPYKADFPRP-QAF-P 318 (546)
T ss_pred HHHHHHHHHHHHHHHhhccchhhHHHHHHHHHHHHhhHHHHHHhhhhHHHHHHHHHHHHHHhhcCCccccCCCC-CcC-C
Confidence 3333333322222222122 122444555555667899999999999999999999999998665543221111 111 1
Q ss_pred CCccEEEeeeEEEeCCCCCCCccccceEEeeCCeEEEEEcCCCCChHHHHHHHhCCCCCCCcEEEEcCeE----------
Q 037346 354 SDTAIEIIDGSFSWDFSSPNPTLRNINLKVFHGMRVAVCGTVGSGKSSCLSCILGGVPKESGIIRLCGTK---------- 423 (1156)
Q Consensus 354 ~~~~i~~~~~~f~~~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKSTll~~i~g~~~~~~G~i~~~g~~---------- 423 (1156)
.=..++++|+.|+|+. ...-+..||++|++||++.|+|.||||||||++++.|++.|++|+|.+||+.
T Consensus 319 ~~~~lelrnvrfay~~--~~FhvgPiNl~ikrGelvFliG~NGsGKST~~~LLtGL~~PqsG~I~ldg~pV~~e~ledYR 396 (546)
T COG4615 319 DWKTLELRNVRFAYQD--NAFHVGPINLTIKRGELVFLIGGNGSGKSTLAMLLTGLYQPQSGEILLDGKPVSAEQLEDYR 396 (546)
T ss_pred cccceeeeeeeeccCc--ccceecceeeEEecCcEEEEECCCCCcHHHHHHHHhcccCCCCCceeECCccCCCCCHHHHH
Confidence 1235999999999974 3478999999999999999999999999999999999999999999999962
Q ss_pred ---EEEecCCcCCCccHHHHhhcCCC-CCHHHHHHHHHHhCCchhhhhCCCCCccccccCCCCCCHHHHHHHHHHHhhcc
Q 037346 424 ---AYVAQSPWIQSGKIEENILFGKE-MDRERYERVLEACSLKKDLEVLPFGDQTIIGERGINLSGGQKQRIQIARPLYQ 499 (1156)
Q Consensus 424 ---~~v~Q~~~~~~~ti~eni~~~~~-~~~~~~~~~~~~~~l~~~~~~~~~g~~t~v~~~g~~LSgGqkqRi~lAral~~ 499 (1156)
+-|+-+-|+|+.++ -+.. .+++..++.++...+...... .+|.-+ ...||-|||.|+|+--|++-
T Consensus 397 ~LfSavFsDyhLF~~ll-----~~e~~as~q~i~~~LqrLel~~ktsl-~d~~fs-----~~kLStGQkKRlAll~AllE 465 (546)
T COG4615 397 KLFSAVFSDYHLFDQLL-----GPEGKASPQLIEKWLQRLELAHKTSL-NDGRFS-----NLKLSTGQKKRLALLLALLE 465 (546)
T ss_pred HHHHHHhhhHhhhHhhh-----CCccCCChHHHHHHHHHHHHhhhhcc-cCCccc-----ccccccchHHHHHHHHHHHh
Confidence 22333444443322 1222 456677777777766654332 122111 24699999999999999999
Q ss_pred CCCeeeeeCCCCCcCHHHHHHHHHHHH---hcCCCEEEEEccCCCccccCCEEEEEeCCeEEEc
Q 037346 500 DADIFLLDDPFSPVDDHTGAHLFKFCW---VSSSKTVIYATHQVEFLPAADLILVIKDGKITQA 560 (1156)
Q Consensus 500 ~~~illlDep~s~lD~~~~~~i~~~~~---~~~~~tvi~vtH~~~~~~~~d~i~~l~~G~i~~~ 560 (1156)
+-||+++||=-+--||.-+++.++.++ +..||||+.||||-.+...|||++.|++|++++.
T Consensus 466 eR~Ilv~DEWAADQDPaFRR~FY~~lLp~LK~qGKTI~aIsHDd~YF~~ADrll~~~~G~~~e~ 529 (546)
T COG4615 466 ERDILVLDEWAADQDPAFRREFYQVLLPLLKEQGKTIFAISHDDHYFIHADRLLEMRNGQLSEL 529 (546)
T ss_pred hCCeEEeehhhccCChHHHHHHHHHHhHHHHHhCCeEEEEecCchhhhhHHHHHHHhcCceeec
Confidence 999999999999999999998888653 3679999999999999999999999999999864
|
|
| >PRK10744 pstB phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.9e-37 Score=340.93 Aligned_cols=203 Identities=28% Similarity=0.395 Sum_probs=172.2
Q ss_pred ccEEEeeeEEEeCCCCCCCccccceEEeeCCeEEEEEcCCCCChHHHHHHHhCCCC-----CCCcEEEEcC---------
Q 037346 356 TAIEIIDGSFSWDFSSPNPTLRNINLKVFHGMRVAVCGTVGSGKSSCLSCILGGVP-----KESGIIRLCG--------- 421 (1156)
Q Consensus 356 ~~i~~~~~~f~~~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKSTll~~i~g~~~-----~~~G~i~~~g--------- 421 (1156)
+.++++|+++.|+ +.++|+|+||+|++||+++|+||||||||||+++|+|+++ |++|+|.++|
T Consensus 12 ~~l~~~~l~~~~~---~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~p~~G~i~~~g~~~~~~~~~ 88 (260)
T PRK10744 12 SKIQVRNLNFYYG---KFHALKNINLDIAKNQVTAFIGPSGCGKSTLLRTFNRMYELYPEQRAEGEILLDGENILTPKQD 88 (260)
T ss_pred ceEEEEEEEEEeC---CeEEeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCcceEEEECCEEccccccc
Confidence 4699999999996 3479999999999999999999999999999999999986 5899999876
Q ss_pred ------eEEEEecCCcCCCccHHHHhhcCCC----CCH----HHHHHHHHHhCCchhhhhCCCCCccccccCCCCCCHHH
Q 037346 422 ------TKAYVAQSPWIQSGKIEENILFGKE----MDR----ERYERVLEACSLKKDLEVLPFGDQTIIGERGINLSGGQ 487 (1156)
Q Consensus 422 ------~~~~v~Q~~~~~~~ti~eni~~~~~----~~~----~~~~~~~~~~~l~~~~~~~~~g~~t~v~~~g~~LSgGq 487 (1156)
+++|++|+|.++..|++||+.++.. .+. ++.+++++.+++...+. ...++...+|||||
T Consensus 89 ~~~~~~~i~~~~q~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-------~~~~~~~~~LS~Gq 161 (260)
T PRK10744 89 IALLRAKVGMVFQKPTPFPMSIYDNIAFGVRLFEKLSRAEMDERVEWALTKAALWNEVK-------DKLHQSGYSLSGGQ 161 (260)
T ss_pred hHHHhcceEEEecCCccCcCcHHHHHhhhHhhcCCCCHHHHHHHHHHHHHHcCCChhhH-------HHHhcCCCCCCHHH
Confidence 2689999999888999999987532 222 34556677776643321 23356678999999
Q ss_pred HHHHHHHHhhccCCCeeeeeCCCCCcCHHHHHHHHHHHHh-cCCCEEEEEccCCCccc-cCCEEEEEeCCeEEEccChHH
Q 037346 488 KQRIQIARPLYQDADIFLLDDPFSPVDDHTGAHLFKFCWV-SSSKTVIYATHQVEFLP-AADLILVIKDGKITQAGKYSD 565 (1156)
Q Consensus 488 kqRi~lAral~~~~~illlDep~s~lD~~~~~~i~~~~~~-~~~~tvi~vtH~~~~~~-~~d~i~~l~~G~i~~~g~~~~ 565 (1156)
|||++||||++.+|+++||||||++||+.+++.+.+.+.. .+++|+|++||+++.+. .||++++|++|++++.|+.++
T Consensus 162 ~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~ 241 (260)
T PRK10744 162 QQRLCIARGIAIRPEVLLLDEPCSALDPISTGRIEELITELKQDYTVVIVTHNMQQAARCSDYTAFMYLGELIEFGNTDT 241 (260)
T ss_pred HHHHHHHHHHHCCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHH
Confidence 9999999999999999999999999999999988876644 34689999999999885 599999999999999999988
Q ss_pred HHh
Q 037346 566 ILN 568 (1156)
Q Consensus 566 l~~ 568 (1156)
+.+
T Consensus 242 ~~~ 244 (260)
T PRK10744 242 IFT 244 (260)
T ss_pred HHh
Confidence 764
|
|
| >cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-37 Score=334.26 Aligned_cols=193 Identities=21% Similarity=0.344 Sum_probs=163.3
Q ss_pred EEEeeeEEEeCCCCC-CCccccceEEeeCCeEEEEEcCCCCChHHHHHHHhCCCCCCCcEEEEcC------------eEE
Q 037346 358 IEIIDGSFSWDFSSP-NPTLRNINLKVFHGMRVAVCGTVGSGKSSCLSCILGGVPKESGIIRLCG------------TKA 424 (1156)
Q Consensus 358 i~~~~~~f~~~~~~~-~~~l~~i~l~i~~g~~~~ivG~~GsGKSTll~~i~g~~~~~~G~i~~~g------------~~~ 424 (1156)
++++|++++|+.... .++|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.++| .++
T Consensus 2 l~~~~v~~~~~~~~~~~~il~~~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~i~ 81 (218)
T cd03266 2 ITADALTKRFRDVKKTVQAVDGVSFTVKPGEVTGLLGPNGAGKTTTLRMLAGLLEPDAGFATVDGFDVVKEPAEARRRLG 81 (218)
T ss_pred eEEEEEEEecCCCCccceeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCCceEEECCEEcccCHHHHHhhEE
Confidence 689999999963211 2699999999999999999999999999999999999999999999987 378
Q ss_pred EEecCCcCCCc-cHHHHhhcCCC---CC----HHHHHHHHHHhCCchhhhhCCCCCccccccCCCCCCHHHHHHHHHHHh
Q 037346 425 YVAQSPWIQSG-KIEENILFGKE---MD----RERYERVLEACSLKKDLEVLPFGDQTIIGERGINLSGGQKQRIQIARP 496 (1156)
Q Consensus 425 ~v~Q~~~~~~~-ti~eni~~~~~---~~----~~~~~~~~~~~~l~~~~~~~~~g~~t~v~~~g~~LSgGqkqRi~lAra 496 (1156)
|++|+|.++.. |++||+.+... .. .++..++++.+++.+.+ .+.+.+||||||||++||||
T Consensus 82 ~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-----------~~~~~~LS~G~~qrv~lara 150 (218)
T cd03266 82 FVSDSTGLYDRLTARENLEYFAGLYGLKGDELTARLEELADRLGMEELL-----------DRRVGGFSTGMRQKVAIARA 150 (218)
T ss_pred EecCCcccCcCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHH-----------hhhhhhcCHHHHHHHHHHHH
Confidence 99999988874 99999976421 11 23456677777765443 34567899999999999999
Q ss_pred hccCCCeeeeeCCCCCcCHHHHHHHHHHHHh--cCCCEEEEEccCCCccc-cCCEEEEEeCCeEEEcc
Q 037346 497 LYQDADIFLLDDPFSPVDDHTGAHLFKFCWV--SSSKTVIYATHQVEFLP-AADLILVIKDGKITQAG 561 (1156)
Q Consensus 497 l~~~~~illlDep~s~lD~~~~~~i~~~~~~--~~~~tvi~vtH~~~~~~-~~d~i~~l~~G~i~~~g 561 (1156)
++.+|+++||||||++||+.+.+.+.+.+.. .+|+|+|++||+++.+. .||++++|++|++++.|
T Consensus 151 l~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~tH~~~~~~~~~d~i~~l~~G~i~~~~ 218 (218)
T cd03266 151 LVHDPPVLLLDEPTTGLDVMATRALREFIRQLRALGKCILFSTHIMQEVERLCDRVVVLHRGRVVYEG 218 (218)
T ss_pred HhcCCCEEEEcCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhcCEEEEEECCEEeecC
Confidence 9999999999999999999999988876644 35889999999999876 59999999999998754
|
NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein. |
| >COG4555 NatA ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-37 Score=309.03 Aligned_cols=199 Identities=22% Similarity=0.325 Sum_probs=171.4
Q ss_pred EEEeeeEEEeCCCCCCCccccceEEeeCCeEEEEEcCCCCChHHHHHHHhCCCCCCCcEEEEcC------------eEEE
Q 037346 358 IEIIDGSFSWDFSSPNPTLRNINLKVFHGMRVAVCGTVGSGKSSCLSCILGGVPKESGIIRLCG------------TKAY 425 (1156)
Q Consensus 358 i~~~~~~f~~~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKSTll~~i~g~~~~~~G~i~~~g------------~~~~ 425 (1156)
+++.+++++|++ ...+++|+||+++.||+++|.|||||||||+|+.|.+++.|++|.|.++| ++|.
T Consensus 2 l~v~~l~K~y~~--~v~AvrdVSF~ae~Gei~GlLG~NGAGKTT~LRmiatlL~P~~G~v~idg~d~~~~p~~vrr~IGV 79 (245)
T COG4555 2 LEVTDLTKSYGS--KVQAVRDVSFEAEEGEITGLLGENGAGKTTLLRMIATLLIPDSGKVTIDGVDTVRDPSFVRRKIGV 79 (245)
T ss_pred eeeeehhhhccC--HHhhhhheeEEeccceEEEEEcCCCCCchhHHHHHHHhccCCCceEEEeecccccChHHHhhhcce
Confidence 688999999974 34589999999999999999999999999999999999999999999998 3677
Q ss_pred EecCCcCC-CccHHHHhhcCCC-------CCHHHHHHHHHHhCCchhhhhCCCCCccccccCCCCCCHHHHHHHHHHHhh
Q 037346 426 VAQSPWIQ-SGKIEENILFGKE-------MDRERYERVLEACSLKKDLEVLPFGDQTIIGERGINLSGGQKQRIQIARPL 497 (1156)
Q Consensus 426 v~Q~~~~~-~~ti~eni~~~~~-------~~~~~~~~~~~~~~l~~~~~~~~~g~~t~v~~~g~~LSgGqkqRi~lAral 497 (1156)
++-+.-++ ..|++|||.|... ..+.+..++.+..+|.+.++ ++..++|-||||||+|||||
T Consensus 80 l~~e~glY~RlT~rEnl~~Fa~L~~l~~~~~kari~~l~k~l~l~~~~~-----------rRv~~~S~G~kqkV~iARAl 148 (245)
T COG4555 80 LFGERGLYARLTARENLKYFARLNGLSRKEIKARIAELSKRLQLLEYLD-----------RRVGEFSTGMKQKVAIARAL 148 (245)
T ss_pred ecCCcChhhhhhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHhChHHHHH-----------HHHhhhchhhHHHHHHHHHH
Confidence 77555554 5699999986421 22567777888888876554 45568999999999999999
Q ss_pred ccCCCeeeeeCCCCCcCHHHHHHHHHHHHh--cCCCEEEEEccCCCccc-cCCEEEEEeCCeEEEccChHHHHhc
Q 037346 498 YQDADIFLLDDPFSPVDDHTGAHLFKFCWV--SSSKTVIYATHQVEFLP-AADLILVIKDGKITQAGKYSDILNS 569 (1156)
Q Consensus 498 ~~~~~illlDep~s~lD~~~~~~i~~~~~~--~~~~tvi~vtH~~~~~~-~~d~i~~l~~G~i~~~g~~~~l~~~ 569 (1156)
.+||++++||||||+||..+.+.+.+.+.+ ..|++||+.||.++.++ .||+|+++++|+++..|+.+++.+.
T Consensus 149 vh~P~i~vlDEP~sGLDi~~~r~~~dfi~q~k~egr~viFSSH~m~EvealCDrvivlh~Gevv~~gs~~~l~~r 223 (245)
T COG4555 149 VHDPSILVLDEPTSGLDIRTRRKFHDFIKQLKNEGRAVIFSSHIMQEVEALCDRVIVLHKGEVVLEGSIEALDAR 223 (245)
T ss_pred hcCCCeEEEcCCCCCccHHHHHHHHHHHHHhhcCCcEEEEecccHHHHHHhhheEEEEecCcEEEcCCHHHHHHH
Confidence 999999999999999999999888776654 45899999999999998 5999999999999999999988653
|
|
| >cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-37 Score=332.37 Aligned_cols=189 Identities=23% Similarity=0.370 Sum_probs=161.7
Q ss_pred EEEeeeEEEeCCCCCCCccccceEEeeCCeEEEEEcCCCCChHHHHHHHhCCCCCCCcEEEEcC------------eEEE
Q 037346 358 IEIIDGSFSWDFSSPNPTLRNINLKVFHGMRVAVCGTVGSGKSSCLSCILGGVPKESGIIRLCG------------TKAY 425 (1156)
Q Consensus 358 i~~~~~~f~~~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKSTll~~i~g~~~~~~G~i~~~g------------~~~~ 425 (1156)
++++|++|.|+ +.++++|+||++++| +++|+||||||||||+++|+|+++|++|+|.++| .++|
T Consensus 1 i~~~~~~~~~~---~~~~l~~vs~~i~~g-~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~i~~ 76 (211)
T cd03264 1 LQLENLTKRYG---KKRALDGVSLTLGPG-MYGLLGPNGAGKTTLMRILATLTPPSSGTIRIDGQDVLKQPQKLRRRIGY 76 (211)
T ss_pred CEEEEEEEEEC---CEEEEcceeEEEcCC-cEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCCccccchHHHHhheEE
Confidence 47899999996 347999999999999 9999999999999999999999999999999987 2789
Q ss_pred EecCCcCCCc-cHHHHhhcCCC---CC----HHHHHHHHHHhCCchhhhhCCCCCccccccCCCCCCHHHHHHHHHHHhh
Q 037346 426 VAQSPWIQSG-KIEENILFGKE---MD----RERYERVLEACSLKKDLEVLPFGDQTIIGERGINLSGGQKQRIQIARPL 497 (1156)
Q Consensus 426 v~Q~~~~~~~-ti~eni~~~~~---~~----~~~~~~~~~~~~l~~~~~~~~~g~~t~v~~~g~~LSgGqkqRi~lAral 497 (1156)
++|+|.++.. |++||+.+... .+ .++.+++++.+++.+..+ ....+||||||||++||||+
T Consensus 77 ~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-----------~~~~~LS~G~~qrv~la~al 145 (211)
T cd03264 77 LPQEFGVYPNFTVREFLDYIAWLKGIPSKEVKARVDEVLELVNLGDRAK-----------KKIGSLSGGMRRRVGIAQAL 145 (211)
T ss_pred ecCCCcccccCCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCHHHHh-----------CchhhCCHHHHHHHHHHHHH
Confidence 9999998875 99999986421 11 234566777777765433 34468999999999999999
Q ss_pred ccCCCeeeeeCCCCCcCHHHHHHHHHHHHh-cCCCEEEEEccCCCccc-cCCEEEEEeCCeEEEcc
Q 037346 498 YQDADIFLLDDPFSPVDDHTGAHLFKFCWV-SSSKTVIYATHQVEFLP-AADLILVIKDGKITQAG 561 (1156)
Q Consensus 498 ~~~~~illlDep~s~lD~~~~~~i~~~~~~-~~~~tvi~vtH~~~~~~-~~d~i~~l~~G~i~~~g 561 (1156)
+++|+++||||||++||+.+++++.+.+.. .+++|+|++||+++.+. .||++++|++|++++.|
T Consensus 146 ~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~vsH~~~~~~~~~d~i~~l~~g~i~~~g 211 (211)
T cd03264 146 VGDPSILIVDEPTAGLDPEERIRFRNLLSELGEDRIVILSTHIVEDVESLCNQVAVLNKGKLVFEG 211 (211)
T ss_pred hcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhCCCEEEEEcCCHHHHHHhCCEEEEEECCEEEecC
Confidence 999999999999999999999999877644 34689999999999986 59999999999998764
|
The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK11831 putative ABC transporter ATP-binding protein YrbF; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.7e-37 Score=342.40 Aligned_cols=200 Identities=25% Similarity=0.328 Sum_probs=170.0
Q ss_pred ccEEEeeeEEEeCCCCCCCccccceEEeeCCeEEEEEcCCCCChHHHHHHHhCCCCCCCcEEEEcCe-------------
Q 037346 356 TAIEIIDGSFSWDFSSPNPTLRNINLKVFHGMRVAVCGTVGSGKSSCLSCILGGVPKESGIIRLCGT------------- 422 (1156)
Q Consensus 356 ~~i~~~~~~f~~~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKSTll~~i~g~~~~~~G~i~~~g~------------- 422 (1156)
..++++|+++.|+ ++++|+|+||+|++|++++|+||||||||||+++|+|+++|++|+|.++|.
T Consensus 6 ~~l~~~~l~~~~~---~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~ 82 (269)
T PRK11831 6 NLVDMRGVSFTRG---NRCIFDNISLTVPRGKITAIMGPSGIGKTTLLRLIGGQIAPDHGEILFDGENIPAMSRSRLYTV 82 (269)
T ss_pred ceEEEeCeEEEEC---CEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEccccChhhHHHH
Confidence 3589999999996 357999999999999999999999999999999999999999999999872
Q ss_pred ---EEEEecCCcCCCc-cHHHHhhcCC----CCCH----HHHHHHHHHhCCchhhhhCCCCCccccccCCCCCCHHHHHH
Q 037346 423 ---KAYVAQSPWIQSG-KIEENILFGK----EMDR----ERYERVLEACSLKKDLEVLPFGDQTIIGERGINLSGGQKQR 490 (1156)
Q Consensus 423 ---~~~v~Q~~~~~~~-ti~eni~~~~----~~~~----~~~~~~~~~~~l~~~~~~~~~g~~t~v~~~g~~LSgGqkqR 490 (1156)
++|++|++.++.. |+.||+.++. ..+. ++..+.++.+++.+... ....+||||||||
T Consensus 83 ~~~i~~v~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~-----------~~~~~LSgGq~qr 151 (269)
T PRK11831 83 RKRMSMLFQSGALFTDMNVFDNVAYPLREHTQLPAPLLHSTVMMKLEAVGLRGAAK-----------LMPSELSGGMARR 151 (269)
T ss_pred hhcEEEEecccccCCCCCHHHHHHHHHHHccCCCHHHHHHHHHHHHHHcCChhhhh-----------CChhhCCHHHHHH
Confidence 6899999988875 9999998642 1222 23445666666654332 3456899999999
Q ss_pred HHHHHhhccCCCeeeeeCCCCCcCHHHHHHHHHHHHh---cCCCEEEEEccCCCcccc-CCEEEEEeCCeEEEccChHHH
Q 037346 491 IQIARPLYQDADIFLLDDPFSPVDDHTGAHLFKFCWV---SSSKTVIYATHQVEFLPA-ADLILVIKDGKITQAGKYSDI 566 (1156)
Q Consensus 491 i~lAral~~~~~illlDep~s~lD~~~~~~i~~~~~~---~~~~tvi~vtH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l 566 (1156)
++|||||+.+|+++||||||++||+.+++.+.+.+.. ..|+|+|++||+++.+.. ||+|++|++|++++.|+++++
T Consensus 152 v~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiiivsH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~ 231 (269)
T PRK11831 152 AALARAIALEPDLIMFDEPFVGQDPITMGVLVKLISELNSALGVTCVVVSHDVPEVLSIADHAYIVADKKIVAHGSAQAL 231 (269)
T ss_pred HHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCcEEEEEecCHHHHHHhhCEEEEEECCEEEEeCCHHHH
Confidence 9999999999999999999999999999988776643 237899999999998864 999999999999999999988
Q ss_pred Hhc
Q 037346 567 LNS 569 (1156)
Q Consensus 567 ~~~ 569 (1156)
.+.
T Consensus 232 ~~~ 234 (269)
T PRK11831 232 QAN 234 (269)
T ss_pred hcC
Confidence 754
|
|
| >PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.7e-37 Score=337.36 Aligned_cols=197 Identities=28% Similarity=0.419 Sum_probs=168.1
Q ss_pred EEEeeeEEEeCCCCCCCccccceEEeeCCeEEEEEcCCCCChHHHHHHHhCCCCCCCcEEEEcC---------------e
Q 037346 358 IEIIDGSFSWDFSSPNPTLRNINLKVFHGMRVAVCGTVGSGKSSCLSCILGGVPKESGIIRLCG---------------T 422 (1156)
Q Consensus 358 i~~~~~~f~~~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKSTll~~i~g~~~~~~G~i~~~g---------------~ 422 (1156)
++++|+++.|+ ++++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++| .
T Consensus 2 l~~~~l~~~~~---~~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~ 78 (240)
T PRK09493 2 IEFKNVSKHFG---PTQVLHNIDLNIDQGEVVVIIGPSGSGKSTLLRCINKLEEITSGDLIVDGLKVNDPKVDERLIRQE 78 (240)
T ss_pred EEEEeEEEEEC---CeEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCChhHHHHhhc
Confidence 68999999996 35799999999999999999999999999999999999999999999987 2
Q ss_pred EEEEecCCcCCC-ccHHHHhhcCCC----CC----HHHHHHHHHHhCCchhhhhCCCCCccccccCCCCCCHHHHHHHHH
Q 037346 423 KAYVAQSPWIQS-GKIEENILFGKE----MD----RERYERVLEACSLKKDLEVLPFGDQTIIGERGINLSGGQKQRIQI 493 (1156)
Q Consensus 423 ~~~v~Q~~~~~~-~ti~eni~~~~~----~~----~~~~~~~~~~~~l~~~~~~~~~g~~t~v~~~g~~LSgGqkqRi~l 493 (1156)
++|++|++.++. .|++||+.++.. .+ .++..++++..++.+.+ ..+..+||||||||++|
T Consensus 79 i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~-----------~~~~~~LS~G~~qrv~l 147 (240)
T PRK09493 79 AGMVFQQFYLFPHLTALENVMFGPLRVRGASKEEAEKQARELLAKVGLAERA-----------HHYPSELSGGQQQRVAI 147 (240)
T ss_pred eEEEecccccCCCCcHHHHHHhHHHHhcCCCHHHHHHHHHHHHHHcCChHHH-----------hcChhhcCHHHHHHHHH
Confidence 689999998775 699999987531 12 23345566666664433 34457899999999999
Q ss_pred HHhhccCCCeeeeeCCCCCcCHHHHHHHHHHHHh--cCCCEEEEEccCCCccc-cCCEEEEEeCCeEEEccChHHHHh
Q 037346 494 ARPLYQDADIFLLDDPFSPVDDHTGAHLFKFCWV--SSSKTVIYATHQVEFLP-AADLILVIKDGKITQAGKYSDILN 568 (1156)
Q Consensus 494 Aral~~~~~illlDep~s~lD~~~~~~i~~~~~~--~~~~tvi~vtH~~~~~~-~~d~i~~l~~G~i~~~g~~~~l~~ 568 (1156)
|||++.+|+++||||||++||+.+++.+.+.+.. .+++|+|++||+++.+. .||++++|++|++++.|+++++.+
T Consensus 148 a~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 225 (240)
T PRK09493 148 ARALAVKPKLMLFDEPTSALDPELRHEVLKVMQDLAEEGMTMVIVTHEIGFAEKVASRLIFIDKGRIAEDGDPQVLIK 225 (240)
T ss_pred HHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEeeCCHHHHhc
Confidence 9999999999999999999999999988876543 35899999999999986 499999999999999999888764
|
|
| >PRK13640 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.5e-37 Score=343.78 Aligned_cols=201 Identities=30% Similarity=0.424 Sum_probs=172.8
Q ss_pred ccEEEeeeEEEeCCCCCCCccccceEEeeCCeEEEEEcCCCCChHHHHHHHhCCCCCCC---cEEEEcCe----------
Q 037346 356 TAIEIIDGSFSWDFSSPNPTLRNINLKVFHGMRVAVCGTVGSGKSSCLSCILGGVPKES---GIIRLCGT---------- 422 (1156)
Q Consensus 356 ~~i~~~~~~f~~~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKSTll~~i~g~~~~~~---G~i~~~g~---------- 422 (1156)
..++++|++|.|+.. ..++|+|+||+|++||+++|+||||||||||+++|+|+++|++ |+|.++|.
T Consensus 4 ~~l~i~~l~~~~~~~-~~~~l~~v~l~i~~Ge~~~I~G~nGaGKSTLl~~l~G~~~p~~g~~G~i~i~g~~~~~~~~~~~ 82 (282)
T PRK13640 4 NIVEFKHVSFTYPDS-KKPALNDISFSIPRGSWTALIGHNGSGKSTISKLINGLLLPDDNPNSKITVDGITLTAKTVWDI 82 (282)
T ss_pred ceEEEEEEEEEcCCC-CccceeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcccCCCCCCCcEEEECCEECCcCCHHHH
Confidence 469999999999632 3469999999999999999999999999999999999999987 89999873
Q ss_pred ---EEEEecCCc--CCCccHHHHhhcCCC---CCH----HHHHHHHHHhCCchhhhhCCCCCccccccCCCCCCHHHHHH
Q 037346 423 ---KAYVAQSPW--IQSGKIEENILFGKE---MDR----ERYERVLEACSLKKDLEVLPFGDQTIIGERGINLSGGQKQR 490 (1156)
Q Consensus 423 ---~~~v~Q~~~--~~~~ti~eni~~~~~---~~~----~~~~~~~~~~~l~~~~~~~~~g~~t~v~~~g~~LSgGqkqR 490 (1156)
++|++|+|. +++.|+.||+.|+.. .+. ++..++++.+++.+... ....+||||||||
T Consensus 83 ~~~ig~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~-----------~~~~~LS~G~~qr 151 (282)
T PRK13640 83 REKVGIVFQNPDNQFVGATVGDDVAFGLENRAVPRPEMIKIVRDVLADVGMLDYID-----------SEPANLSGGQKQR 151 (282)
T ss_pred HhheEEEEECHHHhhccCCHHHHHHhhHHhCCCCHHHHHHHHHHHHHHCCChhHhc-----------CCcccCCHHHHHH
Confidence 699999984 567899999988632 222 34566777788765444 3346899999999
Q ss_pred HHHHHhhccCCCeeeeeCCCCCcCHHHHHHHHHHHHh--c-CCCEEEEEccCCCccccCCEEEEEeCCeEEEccChHHHH
Q 037346 491 IQIARPLYQDADIFLLDDPFSPVDDHTGAHLFKFCWV--S-SSKTVIYATHQVEFLPAADLILVIKDGKITQAGKYSDIL 567 (1156)
Q Consensus 491 i~lAral~~~~~illlDep~s~lD~~~~~~i~~~~~~--~-~~~tvi~vtH~~~~~~~~d~i~~l~~G~i~~~g~~~~l~ 567 (1156)
++|||||+.+|+++||||||++||+.+++.+.+.+.. . .|+|+|++||+++.+..||++++|++|++++.|+++++.
T Consensus 152 v~laral~~~P~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvli~tH~~~~~~~~d~i~~l~~G~i~~~g~~~~~~ 231 (282)
T PRK13640 152 VAIAGILAVEPKIIILDESTSMLDPAGKEQILKLIRKLKKKNNLTVISITHDIDEANMADQVLVLDDGKLLAQGSPVEIF 231 (282)
T ss_pred HHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHhCCEEEEEECCEEEEeCCHHHHh
Confidence 9999999999999999999999999999998876643 2 388999999999988789999999999999999998876
Q ss_pred h
Q 037346 568 N 568 (1156)
Q Consensus 568 ~ 568 (1156)
.
T Consensus 232 ~ 232 (282)
T PRK13640 232 S 232 (282)
T ss_pred c
Confidence 4
|
|
| >PRK10619 histidine/lysine/arginine/ornithine transporter subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5e-37 Score=340.42 Aligned_cols=200 Identities=26% Similarity=0.427 Sum_probs=170.7
Q ss_pred ccEEEeeeEEEeCCCCCCCccccceEEeeCCeEEEEEcCCCCChHHHHHHHhCCCCCCCcEEEEcCe-------------
Q 037346 356 TAIEIIDGSFSWDFSSPNPTLRNINLKVFHGMRVAVCGTVGSGKSSCLSCILGGVPKESGIIRLCGT------------- 422 (1156)
Q Consensus 356 ~~i~~~~~~f~~~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKSTll~~i~g~~~~~~G~i~~~g~------------- 422 (1156)
+.++++|+++.|+ ++++|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.++|.
T Consensus 4 ~~l~~~~l~~~~~---~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~ 80 (257)
T PRK10619 4 NKLNVIDLHKRYG---EHEVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSEGSIVVNGQTINLVRDKDGQLK 80 (257)
T ss_pred ccEEEeeeEEEEC---CEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEcccccccccccc
Confidence 4699999999996 357999999999999999999999999999999999999999999998872
Q ss_pred -------------EEEEecCCcCCC-ccHHHHhhcCC----CCC----HHHHHHHHHHhCCchhhhhCCCCCccccccCC
Q 037346 423 -------------KAYVAQSPWIQS-GKIEENILFGK----EMD----RERYERVLEACSLKKDLEVLPFGDQTIIGERG 480 (1156)
Q Consensus 423 -------------~~~v~Q~~~~~~-~ti~eni~~~~----~~~----~~~~~~~~~~~~l~~~~~~~~~g~~t~v~~~g 480 (1156)
++|+||++.++. .|++||+.++. ..+ +++..++++..++...+. +...
T Consensus 81 ~~~~~~~~~~~~~i~~v~q~~~l~~~~sv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~----------~~~~ 150 (257)
T PRK10619 81 VADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVLGLSKQEARERAVKYLAKVGIDERAQ----------GKYP 150 (257)
T ss_pred cccchHHHHHhhceEEEecCcccCCCCcHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCChhhh----------hCCc
Confidence 699999999886 59999998642 112 234555666666654321 2455
Q ss_pred CCCCHHHHHHHHHHHhhccCCCeeeeeCCCCCcCHHHHHHHHHHHHh--cCCCEEEEEccCCCcccc-CCEEEEEeCCeE
Q 037346 481 INLSGGQKQRIQIARPLYQDADIFLLDDPFSPVDDHTGAHLFKFCWV--SSSKTVIYATHQVEFLPA-ADLILVIKDGKI 557 (1156)
Q Consensus 481 ~~LSgGqkqRi~lAral~~~~~illlDep~s~lD~~~~~~i~~~~~~--~~~~tvi~vtH~~~~~~~-~d~i~~l~~G~i 557 (1156)
.+||||||||++|||||+++|+++||||||++||+.+.+.+.+.+.. .+|+|+|++||+++.+.. ||+|++|++|++
T Consensus 151 ~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~g~tiiivsH~~~~~~~~~d~i~~l~~G~i 230 (257)
T PRK10619 151 VHLSGGQQQRVSIARALAMEPEVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHEMGFARHVSSHVIFLHQGKI 230 (257)
T ss_pred ccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEECCEE
Confidence 78999999999999999999999999999999999999998876543 358999999999999875 999999999999
Q ss_pred EEccChHHHHh
Q 037346 558 TQAGKYSDILN 568 (1156)
Q Consensus 558 ~~~g~~~~l~~ 568 (1156)
++.|+++++..
T Consensus 231 ~~~~~~~~~~~ 241 (257)
T PRK10619 231 EEEGAPEQLFG 241 (257)
T ss_pred EEeCCHHHhhh
Confidence 99999988764
|
|
| >PRK14235 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.1e-37 Score=341.13 Aligned_cols=204 Identities=25% Similarity=0.361 Sum_probs=172.7
Q ss_pred CccEEEeeeEEEeCCCCCCCccccceEEeeCCeEEEEEcCCCCChHHHHHHHhCCCCC-----CCcEEEEcC--------
Q 037346 355 DTAIEIIDGSFSWDFSSPNPTLRNINLKVFHGMRVAVCGTVGSGKSSCLSCILGGVPK-----ESGIIRLCG-------- 421 (1156)
Q Consensus 355 ~~~i~~~~~~f~~~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKSTll~~i~g~~~~-----~~G~i~~~g-------- 421 (1156)
+..|+++|+++.|+ ++++|+|+||+|++|++++|+||||||||||+++|+|+++| ++|+|.++|
T Consensus 17 ~~~l~~~nl~~~~~---~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~I~~~g~~i~~~~~ 93 (267)
T PRK14235 17 EIKMRARDVSVFYG---EKQALFDVDLDIPEKTVTAFIGPSGCGKSTFLRCLNRMNDTIDGCRVTGKITLDGEDIYDPRL 93 (267)
T ss_pred CceEEEEeEEEEEC---CEEEEEEEEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCceEEEECCEECccccc
Confidence 45799999999996 35799999999999999999999999999999999999975 899999987
Q ss_pred -------eEEEEecCCcCCCccHHHHhhcCCC---C--C----HHHHHHHHHHhCCchhhhhCCCCCccccccCCCCCCH
Q 037346 422 -------TKAYVAQSPWIQSGKIEENILFGKE---M--D----RERYERVLEACSLKKDLEVLPFGDQTIIGERGINLSG 485 (1156)
Q Consensus 422 -------~~~~v~Q~~~~~~~ti~eni~~~~~---~--~----~~~~~~~~~~~~l~~~~~~~~~g~~t~v~~~g~~LSg 485 (1156)
.++|++|+|.++..|++||+.++.. . . .++.+++++.+++.+.+. ...++.+.+|||
T Consensus 94 ~~~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-------~~~~~~~~~LSg 166 (267)
T PRK14235 94 DVVELRARVGMVFQKPNPFPKSIYENVAYGPRIHGLARSKAELDEIVETSLRKAGLWEEVK-------DRLHEPGTGLSG 166 (267)
T ss_pred chHHHhhceEEEecCCCCCCCcHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCchhhh-------HHhhCCcccCCH
Confidence 2689999999888899999987531 1 1 234466777777754321 123456779999
Q ss_pred HHHHHHHHHHhhccCCCeeeeeCCCCCcCHHHHHHHHHHHHh-cCCCEEEEEccCCCccc-cCCEEEEEeCCeEEEccCh
Q 037346 486 GQKQRIQIARPLYQDADIFLLDDPFSPVDDHTGAHLFKFCWV-SSSKTVIYATHQVEFLP-AADLILVIKDGKITQAGKY 563 (1156)
Q Consensus 486 GqkqRi~lAral~~~~~illlDep~s~lD~~~~~~i~~~~~~-~~~~tvi~vtH~~~~~~-~~d~i~~l~~G~i~~~g~~ 563 (1156)
|||||++|||||+.+|+++||||||++||+.+++.+.+.+.. .+++|+|++||+++.+. .||++++|++|++++.|++
T Consensus 167 Gq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~l~~~~tiiivtH~~~~~~~~~d~v~~l~~G~i~~~g~~ 246 (267)
T PRK14235 167 GQQQRLCIARAIAVSPEVILMDEPCSALDPIATAKVEELIDELRQNYTIVIVTHSMQQAARVSQRTAFFHLGNLVEVGDT 246 (267)
T ss_pred HHHHHHHHHHHHHcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHhcCCeEEEEEcCHHHHHhhCCEEEEEECCEEEEeCCH
Confidence 999999999999999999999999999999999988776644 34689999999999985 5999999999999999999
Q ss_pred HHHHh
Q 037346 564 SDILN 568 (1156)
Q Consensus 564 ~~l~~ 568 (1156)
+++..
T Consensus 247 ~~~~~ 251 (267)
T PRK14235 247 EKMFT 251 (267)
T ss_pred HHHHh
Confidence 88764
|
|
| >PRK10070 glycine betaine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.9e-37 Score=355.78 Aligned_cols=185 Identities=26% Similarity=0.387 Sum_probs=161.2
Q ss_pred CccccceEEeeCCeEEEEEcCCCCChHHHHHHHhCCCCCCCcEEEEcC-----------------eEEEEecCCcCCC-c
Q 037346 374 PTLRNINLKVFHGMRVAVCGTVGSGKSSCLSCILGGVPKESGIIRLCG-----------------TKAYVAQSPWIQS-G 435 (1156)
Q Consensus 374 ~~l~~i~l~i~~g~~~~ivG~~GsGKSTll~~i~g~~~~~~G~i~~~g-----------------~~~~v~Q~~~~~~-~ 435 (1156)
.+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++| .++|++|++.+|. .
T Consensus 42 ~~L~~isl~i~~Gei~~LvG~NGsGKSTLLr~I~Gl~~p~sG~I~i~G~~i~~~~~~~l~~~~~~~igyv~Q~~~l~~~~ 121 (400)
T PRK10070 42 LGVKDASLAIEEGEIFVIMGLSGSGKSTMVRLLNRLIEPTRGQVLIDGVDIAKISDAELREVRRKKIAMVFQSFALMPHM 121 (400)
T ss_pred EEEEeEEEEEcCCCEEEEECCCCchHHHHHHHHHcCCCCCCCEEEECCEECCcCCHHHHHHHHhCCEEEEECCCcCCCCC
Confidence 479999999999999999999999999999999999999999999987 3799999998886 5
Q ss_pred cHHHHhhcCCC---CC----HHHHHHHHHHhCCchhhhhCCCCCccccccCCCCCCHHHHHHHHHHHhhccCCCeeeeeC
Q 037346 436 KIEENILFGKE---MD----RERYERVLEACSLKKDLEVLPFGDQTIIGERGINLSGGQKQRIQIARPLYQDADIFLLDD 508 (1156)
Q Consensus 436 ti~eni~~~~~---~~----~~~~~~~~~~~~l~~~~~~~~~g~~t~v~~~g~~LSgGqkqRi~lAral~~~~~illlDe 508 (1156)
|++||+.++.. ++ .++..++++.++|.+..+. ...+||||||||++|||||+.+|++|||||
T Consensus 122 Tv~enl~~~~~~~~~~~~~~~~~~~e~L~~~gL~~~~~~-----------~~~~LSgGq~QRv~LArAL~~~P~iLLLDE 190 (400)
T PRK10070 122 TVLDNTAFGMELAGINAEERREKALDALRQVGLENYAHS-----------YPDELSGGMRQRVGLARALAINPDILLMDE 190 (400)
T ss_pred CHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCChhhhc-----------CcccCCHHHHHHHHHHHHHhcCCCEEEEEC
Confidence 99999998632 22 2455667788888655543 346899999999999999999999999999
Q ss_pred CCCCcCHHHHHHHHHHHHh---cCCCEEEEEccCCCccc-cCCEEEEEeCCeEEEccChHHHHhc
Q 037346 509 PFSPVDDHTGAHLFKFCWV---SSSKTVIYATHQVEFLP-AADLILVIKDGKITQAGKYSDILNS 569 (1156)
Q Consensus 509 p~s~lD~~~~~~i~~~~~~---~~~~tvi~vtH~~~~~~-~~d~i~~l~~G~i~~~g~~~~l~~~ 569 (1156)
||++||+.+++.+.+.+.. ..++|+|++||+++.+. .||+|++|++|++++.|+++++...
T Consensus 191 Pts~LD~~~r~~l~~~L~~l~~~~g~TIIivTHd~~~~~~~~Dri~vL~~G~i~~~g~~~~l~~~ 255 (400)
T PRK10070 191 AFSALDPLIRTEMQDELVKLQAKHQRTIVFISHDLDEAMRIGDRIAIMQNGEVVQVGTPDEILNN 255 (400)
T ss_pred CCccCCHHHHHHHHHHHHHHHHHCCCeEEEEECCHHHHHHhCCEEEEEECCEEEecCCHHHHHhC
Confidence 9999999999998876644 24899999999999875 5999999999999999999998764
|
|
| >TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.1e-37 Score=332.96 Aligned_cols=190 Identities=25% Similarity=0.386 Sum_probs=160.4
Q ss_pred EEEeeeEEEeCCCC-CCCccccceEEeeCCeEEEEEcCCCCChHHHHHHHhCCCCCCCcEEEEcC---------------
Q 037346 358 IEIIDGSFSWDFSS-PNPTLRNINLKVFHGMRVAVCGTVGSGKSSCLSCILGGVPKESGIIRLCG--------------- 421 (1156)
Q Consensus 358 i~~~~~~f~~~~~~-~~~~l~~i~l~i~~g~~~~ivG~~GsGKSTll~~i~g~~~~~~G~i~~~g--------------- 421 (1156)
++++|++++|+... ..++|+|+||++++|++++|+||||||||||+++|+|+++|++|+|.++|
T Consensus 2 l~~~~v~~~~~~~~~~~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 81 (221)
T TIGR02211 2 LKCENLGKRYQEGKLDTRVLKGVSLSIGKGEIVAIVGSSGSGKSTLLHLLGGLDNPTSGEVLFNGQSLSKLSSNERAKLR 81 (221)
T ss_pred EEEEeeeEEccCCCcceEeEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEhhhcCHhHHHHHH
Confidence 68999999996321 24699999999999999999999999999999999999999999999986
Q ss_pred --eEEEEecCCcCCC-ccHHHHhhcCC---CCC----HHHHHHHHHHhCCchhhhhCCCCCccccccCCCCCCHHHHHHH
Q 037346 422 --TKAYVAQSPWIQS-GKIEENILFGK---EMD----RERYERVLEACSLKKDLEVLPFGDQTIIGERGINLSGGQKQRI 491 (1156)
Q Consensus 422 --~~~~v~Q~~~~~~-~ti~eni~~~~---~~~----~~~~~~~~~~~~l~~~~~~~~~g~~t~v~~~g~~LSgGqkqRi 491 (1156)
.++|++|++.++. .|++||+.++. ..+ .++..++++.+++.+.+. ....+||||||||+
T Consensus 82 ~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-----------~~~~~LS~G~~qrv 150 (221)
T TIGR02211 82 NKKLGFIYQFHHLLPDFTALENVAMPLLIGKKSVKEAKERAYEMLEKVGLEHRIN-----------HRPSELSGGERQRV 150 (221)
T ss_pred HhcEEEEecccccCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhhhh-----------CChhhCCHHHHHHH
Confidence 2799999998875 59999998742 122 234456666666654333 44568999999999
Q ss_pred HHHHhhccCCCeeeeeCCCCCcCHHHHHHHHHHHHh---cCCCEEEEEccCCCccccCCEEEEEeCCeEE
Q 037346 492 QIARPLYQDADIFLLDDPFSPVDDHTGAHLFKFCWV---SSSKTVIYATHQVEFLPAADLILVIKDGKIT 558 (1156)
Q Consensus 492 ~lAral~~~~~illlDep~s~lD~~~~~~i~~~~~~---~~~~tvi~vtH~~~~~~~~d~i~~l~~G~i~ 558 (1156)
+||||++.+|+++||||||++||+.+++.+.+.+.. ..++|+|++||+++.+..+|+|++|++|+++
T Consensus 151 ~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~tH~~~~~~~~d~v~~l~~G~i~ 220 (221)
T TIGR02211 151 AIARALVNQPSLVLADEPTGNLDNNNAKIIFDLMLELNRELNTSFLVVTHDLELAKKLDRVLEMKDGQLF 220 (221)
T ss_pred HHHHHHhCCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHhhcCEEEEEeCCEec
Confidence 999999999999999999999999999988876643 2478999999999988779999999999975
|
This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina. |
| >PRK13632 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.2e-37 Score=340.86 Aligned_cols=201 Identities=31% Similarity=0.450 Sum_probs=171.3
Q ss_pred ccEEEeeeEEEeCCCCCCCccccceEEeeCCeEEEEEcCCCCChHHHHHHHhCCCCCCCcEEEEcCe-------------
Q 037346 356 TAIEIIDGSFSWDFSSPNPTLRNINLKVFHGMRVAVCGTVGSGKSSCLSCILGGVPKESGIIRLCGT------------- 422 (1156)
Q Consensus 356 ~~i~~~~~~f~~~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKSTll~~i~g~~~~~~G~i~~~g~------------- 422 (1156)
..++++|+++.|+. +++++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.
T Consensus 6 ~~l~~~nl~~~~~~-~~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~ 84 (271)
T PRK13632 6 VMIKVENVSFSYPN-SENNALKNVSFEINEGEYVAILGHNGSGKSTISKILTGLLKPQSGEIKIDGITISKENLKEIRKK 84 (271)
T ss_pred eEEEEEeEEEEcCC-CCccceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEecCcCCHHHHhcc
Confidence 36899999999963 2357999999999999999999999999999999999999999999999872
Q ss_pred EEEEecCCc--CCCccHHHHhhcCCC---CCHH----HHHHHHHHhCCchhhhhCCCCCccccccCCCCCCHHHHHHHHH
Q 037346 423 KAYVAQSPW--IQSGKIEENILFGKE---MDRE----RYERVLEACSLKKDLEVLPFGDQTIIGERGINLSGGQKQRIQI 493 (1156)
Q Consensus 423 ~~~v~Q~~~--~~~~ti~eni~~~~~---~~~~----~~~~~~~~~~l~~~~~~~~~g~~t~v~~~g~~LSgGqkqRi~l 493 (1156)
++|++|+|. ++..|++||+.++.. .+.+ +..++++.+++.+.++ ....+||||||||++|
T Consensus 85 i~~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-----------~~~~~LS~G~~qrl~l 153 (271)
T PRK13632 85 IGIIFQNPDNQFIGATVEDDIAFGLENKKVPPKKMKDIIDDLAKKVGMEDYLD-----------KEPQNLSGGQKQRVAI 153 (271)
T ss_pred eEEEEeCHHHhcCcccHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCHHHhh-----------CCcccCCHHHHHHHHH
Confidence 689999983 556799999987531 2222 3456677777765443 3456899999999999
Q ss_pred HHhhccCCCeeeeeCCCCCcCHHHHHHHHHHHHh--cC-CCEEEEEccCCCccccCCEEEEEeCCeEEEccChHHHHh
Q 037346 494 ARPLYQDADIFLLDDPFSPVDDHTGAHLFKFCWV--SS-SKTVIYATHQVEFLPAADLILVIKDGKITQAGKYSDILN 568 (1156)
Q Consensus 494 Aral~~~~~illlDep~s~lD~~~~~~i~~~~~~--~~-~~tvi~vtH~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~ 568 (1156)
||||+.+|+++||||||++||+.+++.+++.+.. .+ ++|+|++||+++.+..||++++|++|++.+.|+.+++..
T Consensus 154 aral~~~p~lllLDEP~~gLD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~ 231 (271)
T PRK13632 154 ASVLALNPEIIIFDESTSMLDPKGKREIKKIMVDLRKTRKKTLISITHDMDEAILADKVIVFSEGKLIAQGKPKEILN 231 (271)
T ss_pred HHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEEechhHHhhCCEEEEEECCEEEEecCHHHHhc
Confidence 9999999999999999999999999998877644 23 589999999999887899999999999999999887754
|
|
| >cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-37 Score=331.17 Aligned_cols=190 Identities=25% Similarity=0.417 Sum_probs=161.7
Q ss_pred EEEeeeEEEeCCCCCCCccccceEEeeCCeEEEEEcCCCCChHHHHHHHhCCCCCCCcEEEEcC---------eEEEEec
Q 037346 358 IEIIDGSFSWDFSSPNPTLRNINLKVFHGMRVAVCGTVGSGKSSCLSCILGGVPKESGIIRLCG---------TKAYVAQ 428 (1156)
Q Consensus 358 i~~~~~~f~~~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKSTll~~i~g~~~~~~G~i~~~g---------~~~~v~Q 428 (1156)
++++|+++.|+ ++++++|+||++++|++++|+||||||||||+++|+|+++|++|+|.++| .++|++|
T Consensus 1 l~~~~l~~~~~---~~~~l~~v~~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~i~~~~q 77 (210)
T cd03269 1 LEVENVTKRFG---RVTALDDISFSVEKGEIFGLLGPNGAGKTTTIRMILGIILPDSGEVLFDGKPLDIAARNRIGYLPE 77 (210)
T ss_pred CEEEEEEEEEC---CEEEEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCCchhHHHHccEEEecc
Confidence 46899999996 35799999999999999999999999999999999999999999999988 3799999
Q ss_pred CCcCCC-ccHHHHhhcCCC---CC----HHHHHHHHHHhCCchhhhhCCCCCccccccCCCCCCHHHHHHHHHHHhhccC
Q 037346 429 SPWIQS-GKIEENILFGKE---MD----RERYERVLEACSLKKDLEVLPFGDQTIIGERGINLSGGQKQRIQIARPLYQD 500 (1156)
Q Consensus 429 ~~~~~~-~ti~eni~~~~~---~~----~~~~~~~~~~~~l~~~~~~~~~g~~t~v~~~g~~LSgGqkqRi~lAral~~~ 500 (1156)
++.++. .|++||+.+... .. +++..+.++..++.... .....+||||||||++||||++.+
T Consensus 78 ~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-----------~~~~~~LS~G~~qrl~la~al~~~ 146 (210)
T cd03269 78 ERGLYPKMKVIDQLVYLAQLKGLKKEEARRRIDEWLERLELSEYA-----------NKRVEELSKGNQQKVQFIAAVIHD 146 (210)
T ss_pred CCcCCcCCcHHHHHHHHHHHcCCChHHHHHHHHHHHHHcCChHHH-----------hCcHhhCCHHHHHHHHHHHHHhcC
Confidence 998876 499999986421 11 23455666666665433 244578999999999999999999
Q ss_pred CCeeeeeCCCCCcCHHHHHHHHHHHHh--cCCCEEEEEccCCCccc-cCCEEEEEeCCeEEEcc
Q 037346 501 ADIFLLDDPFSPVDDHTGAHLFKFCWV--SSSKTVIYATHQVEFLP-AADLILVIKDGKITQAG 561 (1156)
Q Consensus 501 ~~illlDep~s~lD~~~~~~i~~~~~~--~~~~tvi~vtH~~~~~~-~~d~i~~l~~G~i~~~g 561 (1156)
|+++||||||++||+.+++.+.+.+.. .+++|+|++||+++.+. .||++++|++|++++.|
T Consensus 147 p~~lllDEP~~~LD~~~~~~~~~~l~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~g~i~~~~ 210 (210)
T cd03269 147 PELLILDEPFSGLDPVNVELLKDVIRELARAGKTVILSTHQMELVEELCDRVLLLNKGRAVLYG 210 (210)
T ss_pred CCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEECCCHHHHHHhhhEEEEEeCCEEEecC
Confidence 999999999999999999988876643 35789999999999875 59999999999998754
|
In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.4e-37 Score=337.87 Aligned_cols=200 Identities=30% Similarity=0.418 Sum_probs=168.2
Q ss_pred EEEeeeEEEeCCCCCCCccccceEEeeCCeEEEEEcCCCCChHHHHHHHhCCCCCCCcEEEEcCe-------------EE
Q 037346 358 IEIIDGSFSWDFSSPNPTLRNINLKVFHGMRVAVCGTVGSGKSSCLSCILGGVPKESGIIRLCGT-------------KA 424 (1156)
Q Consensus 358 i~~~~~~f~~~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKSTll~~i~g~~~~~~G~i~~~g~-------------~~ 424 (1156)
++++|++++|+. ..++|+|+||+|++|++++|+||||||||||+++|+|+++|++|+|.++|. ++
T Consensus 1 l~~~~l~~~~~~--~~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 78 (242)
T cd03295 1 IEFENVTKRYGG--GKKAVNNLNLEIAKGEFLVLIGPSGSGKTTTMKMINRLIEPTSGEIFIDGEDIREQDPVELRRKIG 78 (242)
T ss_pred CEEEEEEEEeCC--cceEeeeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCeEcCcCChHHhhcceE
Confidence 468999999963 156999999999999999999999999999999999999999999999873 68
Q ss_pred EEecCCcCCC-ccHHHHhhcCCC---CC----HHHHHHHHHHhCCchhhhhCCCCCccccccCCCCCCHHHHHHHHHHHh
Q 037346 425 YVAQSPWIQS-GKIEENILFGKE---MD----RERYERVLEACSLKKDLEVLPFGDQTIIGERGINLSGGQKQRIQIARP 496 (1156)
Q Consensus 425 ~v~Q~~~~~~-~ti~eni~~~~~---~~----~~~~~~~~~~~~l~~~~~~~~~g~~t~v~~~g~~LSgGqkqRi~lAra 496 (1156)
|++|+|.++. .|++||+.++.. .+ .++..++++..++... ....+.+.+||||||||++||||
T Consensus 79 ~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~---------~~~~~~~~~LS~G~~qrv~lara 149 (242)
T cd03295 79 YVIQQIGLFPHMTVEENIALVPKLLKWPKEKIRERADELLALVGLDPA---------EFADRYPHELSGGQQQRVGVARA 149 (242)
T ss_pred EEccCccccCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCCcH---------HHHhcChhhCCHHHHHHHHHHHH
Confidence 9999998885 699999987532 12 2345566666666530 11235567899999999999999
Q ss_pred hccCCCeeeeeCCCCCcCHHHHHHHHHHHHh--c-CCCEEEEEccCCCccc-cCCEEEEEeCCeEEEccChHHHHh
Q 037346 497 LYQDADIFLLDDPFSPVDDHTGAHLFKFCWV--S-SSKTVIYATHQVEFLP-AADLILVIKDGKITQAGKYSDILN 568 (1156)
Q Consensus 497 l~~~~~illlDep~s~lD~~~~~~i~~~~~~--~-~~~tvi~vtH~~~~~~-~~d~i~~l~~G~i~~~g~~~~l~~ 568 (1156)
++.+|+++||||||++||+.+++.+.+.+.. . .|+|+|++||+++.+. .||+|++|++|++++.|+++++..
T Consensus 150 l~~~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~~g~tvii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~ 225 (242)
T cd03295 150 LAADPPLLLMDEPFGALDPITRDQLQEEFKRLQQELGKTIVFVTHDIDEAFRLADRIAIMKNGEIVQVGTPDEILR 225 (242)
T ss_pred HhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEecCHHHHHHhCCEEEEEECCEEEEecCHHHHHc
Confidence 9999999999999999999999988876644 2 3899999999999875 599999999999999999887754
|
ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK13649 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.5e-37 Score=344.38 Aligned_cols=201 Identities=26% Similarity=0.412 Sum_probs=168.6
Q ss_pred EEEeeeEEEeCCCC--CCCccccceEEeeCCeEEEEEcCCCCChHHHHHHHhCCCCCCCcEEEEcCe-------------
Q 037346 358 IEIIDGSFSWDFSS--PNPTLRNINLKVFHGMRVAVCGTVGSGKSSCLSCILGGVPKESGIIRLCGT------------- 422 (1156)
Q Consensus 358 i~~~~~~f~~~~~~--~~~~l~~i~l~i~~g~~~~ivG~~GsGKSTll~~i~g~~~~~~G~i~~~g~------------- 422 (1156)
++++|++++|+... ..++|+|+||+|++|++++|+||||||||||+++|+|+++|++|+|.++|.
T Consensus 3 l~~~~l~~~~~~~~~~~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~ 82 (280)
T PRK13649 3 INLQNVSYTYQAGTPFEGRALFDVNLTIEDGSYTAFIGHTGSGKSTIMQLLNGLHVPTQGSVRVDDTLITSTSKNKDIKQ 82 (280)
T ss_pred EEEEEEEEEcCCCCccccceeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccccccCHHH
Confidence 78999999996321 146999999999999999999999999999999999999999999999872
Q ss_pred ----EEEEecCC--cCCCccHHHHhhcCCC---CCH----HHHHHHHHHhCCchhhhhCCCCCccccccCCCCCCHHHHH
Q 037346 423 ----KAYVAQSP--WIQSGKIEENILFGKE---MDR----ERYERVLEACSLKKDLEVLPFGDQTIIGERGINLSGGQKQ 489 (1156)
Q Consensus 423 ----~~~v~Q~~--~~~~~ti~eni~~~~~---~~~----~~~~~~~~~~~l~~~~~~~~~g~~t~v~~~g~~LSgGqkq 489 (1156)
++|++|+| .+++.|++||+.++.. .+. ++.+++++.+++.... ......+|||||||
T Consensus 83 ~~~~i~~~~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~----------~~~~~~~LSgG~~q 152 (280)
T PRK13649 83 IRKKVGLVFQFPESQLFEETVLKDVAFGPQNFGVSQEEAEALAREKLALVGISESL----------FEKNPFELSGGQMR 152 (280)
T ss_pred HHhheEEEeeChhhhhccccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCChhh----------hhCCcccCCHHHHH
Confidence 68999998 5777899999987531 222 2334555666664221 23456789999999
Q ss_pred HHHHHHhhccCCCeeeeeCCCCCcCHHHHHHHHHHHHh--cCCCEEEEEccCCCccc-cCCEEEEEeCCeEEEccChHHH
Q 037346 490 RIQIARPLYQDADIFLLDDPFSPVDDHTGAHLFKFCWV--SSSKTVIYATHQVEFLP-AADLILVIKDGKITQAGKYSDI 566 (1156)
Q Consensus 490 Ri~lAral~~~~~illlDep~s~lD~~~~~~i~~~~~~--~~~~tvi~vtH~~~~~~-~~d~i~~l~~G~i~~~g~~~~l 566 (1156)
|++||||++.+|+++||||||++||+.+++.+.+.+.. ..++|+|++||+++.+. .||++++|++|++++.|+++++
T Consensus 153 rv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~ 232 (280)
T PRK13649 153 RVAIAGILAMEPKILVLDEPTAGLDPKGRKELMTLFKKLHQSGMTIVLVTHLMDDVANYADFVYVLEKGKLVLSGKPKDI 232 (280)
T ss_pred HHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeccHHHHHHhCCEEEEEECCEEEEeCCHHHH
Confidence 99999999999999999999999999999988876643 34789999999999885 5999999999999999999887
Q ss_pred Hh
Q 037346 567 LN 568 (1156)
Q Consensus 567 ~~ 568 (1156)
..
T Consensus 233 ~~ 234 (280)
T PRK13649 233 FQ 234 (280)
T ss_pred hc
Confidence 64
|
|
| >PRK13633 cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-36 Score=341.42 Aligned_cols=202 Identities=27% Similarity=0.363 Sum_probs=173.6
Q ss_pred cEEEeeeEEEeCCCC---CCCccccceEEeeCCeEEEEEcCCCCChHHHHHHHhCCCCCCCcEEEEcCe-----------
Q 037346 357 AIEIIDGSFSWDFSS---PNPTLRNINLKVFHGMRVAVCGTVGSGKSSCLSCILGGVPKESGIIRLCGT----------- 422 (1156)
Q Consensus 357 ~i~~~~~~f~~~~~~---~~~~l~~i~l~i~~g~~~~ivG~~GsGKSTll~~i~g~~~~~~G~i~~~g~----------- 422 (1156)
.++++|++++|+... ++++|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.++|.
T Consensus 4 ~l~~~~l~~~~~~~~~~~~~~vl~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~i~g~~i~~~~~~~~~ 83 (280)
T PRK13633 4 MIKCKNVSYKYESNEESTEKLALDDVNLEVKKGEFLVILGRNGSGKSTIAKHMNALLIPSEGKVYVDGLDTSDEENLWDI 83 (280)
T ss_pred eEEEeeeEEEcCCCCCCCCcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEeccccccHHHH
Confidence 589999999997321 257999999999999999999999999999999999999999999999872
Q ss_pred ---EEEEecCCc--CCCccHHHHhhcCCC---CC----HHHHHHHHHHhCCchhhhhCCCCCccccccCCCCCCHHHHHH
Q 037346 423 ---KAYVAQSPW--IQSGKIEENILFGKE---MD----RERYERVLEACSLKKDLEVLPFGDQTIIGERGINLSGGQKQR 490 (1156)
Q Consensus 423 ---~~~v~Q~~~--~~~~ti~eni~~~~~---~~----~~~~~~~~~~~~l~~~~~~~~~g~~t~v~~~g~~LSgGqkqR 490 (1156)
++|++|+|. ++..|+.||+.|+.. .+ +++++++++.++|.+.+.. ...+||||||||
T Consensus 84 ~~~i~~v~q~~~~~~~~~~v~~~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~-----------~~~~LS~G~~qr 152 (280)
T PRK13633 84 RNKAGMVFQNPDNQIVATIVEEDVAFGPENLGIPPEEIRERVDESLKKVGMYEYRRH-----------APHLLSGGQKQR 152 (280)
T ss_pred hhheEEEecChhhhhccccHHHHHHhhHhhcCCCHHHHHHHHHHHHHHCCCHhHhhC-----------CcccCCHHHHHH
Confidence 689999984 566799999998632 12 2456677888888665543 346899999999
Q ss_pred HHHHHhhccCCCeeeeeCCCCCcCHHHHHHHHHHHHh--c-CCCEEEEEccCCCccccCCEEEEEeCCeEEEccChHHHH
Q 037346 491 IQIARPLYQDADIFLLDDPFSPVDDHTGAHLFKFCWV--S-SSKTVIYATHQVEFLPAADLILVIKDGKITQAGKYSDIL 567 (1156)
Q Consensus 491 i~lAral~~~~~illlDep~s~lD~~~~~~i~~~~~~--~-~~~tvi~vtH~~~~~~~~d~i~~l~~G~i~~~g~~~~l~ 567 (1156)
++|||||+.+|+++||||||++||+.++..+.+.+.. . .|.|+|++||+++.+..||++++|++|++++.|+++++.
T Consensus 153 v~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tillvtH~~~~~~~~d~v~~l~~G~i~~~g~~~~~~ 232 (280)
T PRK13633 153 VAIAGILAMRPECIIFDEPTAMLDPSGRREVVNTIKELNKKYGITIILITHYMEEAVEADRIIVMDSGKVVMEGTPKEIF 232 (280)
T ss_pred HHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecChHHHhcCCEEEEEECCEEEEecCHHHHh
Confidence 9999999999999999999999999999998876643 2 489999999999998779999999999999999999886
Q ss_pred hc
Q 037346 568 NS 569 (1156)
Q Consensus 568 ~~ 569 (1156)
..
T Consensus 233 ~~ 234 (280)
T PRK13633 233 KE 234 (280)
T ss_pred cC
Confidence 53
|
|
| >PRK14274 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.6e-37 Score=338.97 Aligned_cols=204 Identities=22% Similarity=0.348 Sum_probs=170.6
Q ss_pred ccEEEeeeEEEeCCCCCCCccccceEEeeCCeEEEEEcCCCCChHHHHHHHhCCCC--C---CCcEEEEcCe--------
Q 037346 356 TAIEIIDGSFSWDFSSPNPTLRNINLKVFHGMRVAVCGTVGSGKSSCLSCILGGVP--K---ESGIIRLCGT-------- 422 (1156)
Q Consensus 356 ~~i~~~~~~f~~~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKSTll~~i~g~~~--~---~~G~i~~~g~-------- 422 (1156)
..++++|+++.|+ ++++|+|+||+|++||+++|+|+||||||||+++|+|+++ | ++|+|.++|.
T Consensus 11 ~~l~i~~l~~~~~---~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~p~~~~~G~i~~~g~~~~~~~~~ 87 (259)
T PRK14274 11 EVYQINGMNLWYG---QHHALKNINLSIPENEVTAIIGPSGCGKSTFIKTLNLMIQMVPNVKLTGEMNYNGSNILKGKVD 87 (259)
T ss_pred ceEEEeeEEEEEC---CeeeEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhccCCCCCCCceEEEECCEEccccccC
Confidence 3589999999996 3479999999999999999999999999999999999987 3 5899998762
Q ss_pred -------EEEEecCCcCCCccHHHHhhcCCC----CCH----HHHHHHHHHhCCchhhhhCCCCCccccccCCCCCCHHH
Q 037346 423 -------KAYVAQSPWIQSGKIEENILFGKE----MDR----ERYERVLEACSLKKDLEVLPFGDQTIIGERGINLSGGQ 487 (1156)
Q Consensus 423 -------~~~v~Q~~~~~~~ti~eni~~~~~----~~~----~~~~~~~~~~~l~~~~~~~~~g~~t~v~~~g~~LSgGq 487 (1156)
++|++|++.++..|++||+.++.. .++ ++..++++..++.+.+. ......+.+|||||
T Consensus 88 ~~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-------~~l~~~~~~LS~Gq 160 (259)
T PRK14274 88 LVELRKNIGMVFQKGNPFPQSIFDNVAYGPRIHGTKNKKKLQEIVEKSLKDVALWDEVK-------DRLHTQALSLSGGQ 160 (259)
T ss_pred HHHHhhceEEEecCCcccccCHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCchhhh-------hhhhCCcccCCHHH
Confidence 689999999988899999987532 121 23344566666643321 22345678999999
Q ss_pred HHHHHHHHhhccCCCeeeeeCCCCCcCHHHHHHHHHHHHh-cCCCEEEEEccCCCccc-cCCEEEEEeCCeEEEccChHH
Q 037346 488 KQRIQIARPLYQDADIFLLDDPFSPVDDHTGAHLFKFCWV-SSSKTVIYATHQVEFLP-AADLILVIKDGKITQAGKYSD 565 (1156)
Q Consensus 488 kqRi~lAral~~~~~illlDep~s~lD~~~~~~i~~~~~~-~~~~tvi~vtH~~~~~~-~~d~i~~l~~G~i~~~g~~~~ 565 (1156)
|||++||||++.+|+++||||||++||+.++..+.+.+.. .+++|+|++||+++.+. .||++++|++|++++.|++++
T Consensus 161 ~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tiiivtH~~~~~~~~~d~i~~l~~G~i~~~g~~~~ 240 (259)
T PRK14274 161 QQRLCIARALATNPDVLLMDEPTSALDPVSTRKIEELILKLKEKYTIVIVTHNMQQAARVSDQTAFFYMGELVECNDTNK 240 (259)
T ss_pred HHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhcCCEEEEEEcCHHHHHHhCCEEEEEECCEEEEECCHHH
Confidence 9999999999999999999999999999999988776544 34789999999999876 599999999999999999998
Q ss_pred HHhc
Q 037346 566 ILNS 569 (1156)
Q Consensus 566 l~~~ 569 (1156)
+...
T Consensus 241 ~~~~ 244 (259)
T PRK14274 241 MFSN 244 (259)
T ss_pred HhhC
Confidence 8643
|
|
| >TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=4e-37 Score=353.10 Aligned_cols=187 Identities=30% Similarity=0.421 Sum_probs=162.7
Q ss_pred CCCccccceEEeeCCeEEEEEcCCCCChHHHHHHHhCCCCCCCcEEEEcC---------------------eEEEEecCC
Q 037346 372 PNPTLRNINLKVFHGMRVAVCGTVGSGKSSCLSCILGGVPKESGIIRLCG---------------------TKAYVAQSP 430 (1156)
Q Consensus 372 ~~~~l~~i~l~i~~g~~~~ivG~~GsGKSTll~~i~g~~~~~~G~i~~~g---------------------~~~~v~Q~~ 430 (1156)
...+|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.++| +++|++|++
T Consensus 36 ~~~~l~~vsf~i~~Gei~~I~G~nGsGKSTLlr~L~Gl~~p~~G~I~idG~~~~~~i~~~~~~~l~~~r~~~i~~vfQ~~ 115 (382)
T TIGR03415 36 LVVGVANASLDIEEGEICVLMGLSGSGKSSLLRAVNGLNPVSRGSVLVKDGDGSIDVANCDAATLRRLRTHRVSMVFQKF 115 (382)
T ss_pred CEEEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEECCEecccccccCCHHHHHHHhcCCEEEEECCC
Confidence 35689999999999999999999999999999999999999999999987 279999999
Q ss_pred cCCC-ccHHHHhhcCCC---CC----HHHHHHHHHHhCCchhhhhCCCCCccccccCCCCCCHHHHHHHHHHHhhccCCC
Q 037346 431 WIQS-GKIEENILFGKE---MD----RERYERVLEACSLKKDLEVLPFGDQTIIGERGINLSGGQKQRIQIARPLYQDAD 502 (1156)
Q Consensus 431 ~~~~-~ti~eni~~~~~---~~----~~~~~~~~~~~~l~~~~~~~~~g~~t~v~~~g~~LSgGqkqRi~lAral~~~~~ 502 (1156)
.+++ .|++||+.++.. .+ .++..++++..+|.+..+ ....+||||||||++|||||+.+|+
T Consensus 116 ~l~p~~Tv~eNi~~~~~~~g~~~~~~~~~a~e~le~vgL~~~~~-----------~~~~~LSgGq~QRV~LARALa~~P~ 184 (382)
T TIGR03415 116 ALMPWLTVEENVAFGLEMQGMPEAERRKRVDEQLELVGLAQWAD-----------KKPGELSGGMQQRVGLARAFAMDAD 184 (382)
T ss_pred cCCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchhhc-----------CChhhCCHHHHHHHHHHHHHhcCCC
Confidence 9887 699999998642 12 234566777777765443 3346899999999999999999999
Q ss_pred eeeeeCCCCCcCHHHHHHHHHHHHh---cCCCEEEEEccCCCcc-ccCCEEEEEeCCeEEEccChHHHHhc
Q 037346 503 IFLLDDPFSPVDDHTGAHLFKFCWV---SSSKTVIYATHQVEFL-PAADLILVIKDGKITQAGKYSDILNS 569 (1156)
Q Consensus 503 illlDep~s~lD~~~~~~i~~~~~~---~~~~tvi~vtH~~~~~-~~~d~i~~l~~G~i~~~g~~~~l~~~ 569 (1156)
|+|||||||+||+.++..+.+.+.. ..++|+|+|||+++.+ +.||+|++|++|++++.|+++++...
T Consensus 185 ILLlDEPts~LD~~~r~~l~~~L~~l~~~~~~TII~iTHdl~e~~~l~DrI~vl~~G~iv~~g~~~ei~~~ 255 (382)
T TIGR03415 185 ILLMDEPFSALDPLIRTQLQDELLELQAKLNKTIIFVSHDLDEALKIGNRIAIMEGGRIIQHGTPEEIVLN 255 (382)
T ss_pred EEEEECCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEecCHHHHhhC
Confidence 9999999999999999999887644 2489999999999987 56999999999999999999998754
|
Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines. |
| >TIGR03411 urea_trans_UrtD urea ABC transporter, ATP-binding protein UrtD | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.8e-37 Score=336.71 Aligned_cols=198 Identities=25% Similarity=0.372 Sum_probs=169.0
Q ss_pred cEEEeeeEEEeCCCCCCCccccceEEeeCCeEEEEEcCCCCChHHHHHHHhCCCCCCCcEEEEcCe--------------
Q 037346 357 AIEIIDGSFSWDFSSPNPTLRNINLKVFHGMRVAVCGTVGSGKSSCLSCILGGVPKESGIIRLCGT-------------- 422 (1156)
Q Consensus 357 ~i~~~~~~f~~~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKSTll~~i~g~~~~~~G~i~~~g~-------------- 422 (1156)
.++++|+++.|+ ++++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.
T Consensus 2 ~i~~~~l~~~~~---~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~ 78 (242)
T TIGR03411 2 ILYLEGLSVSFD---GFKALNDLSLYVDPGELRVIIGPNGAGKTTMMDVITGKTRPDEGSVLFGGTDLTGLPEHQIARAG 78 (242)
T ss_pred eEEEEeeEEEcC---CeEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEECCeecCCCCHHHHHhcC
Confidence 378999999996 347999999999999999999999999999999999999999999999872
Q ss_pred EEEEecCCcCCCc-cHHHHhhcCCCC---------------CHHHHHHHHHHhCCchhhhhCCCCCccccccCCCCCCHH
Q 037346 423 KAYVAQSPWIQSG-KIEENILFGKEM---------------DRERYERVLEACSLKKDLEVLPFGDQTIIGERGINLSGG 486 (1156)
Q Consensus 423 ~~~v~Q~~~~~~~-ti~eni~~~~~~---------------~~~~~~~~~~~~~l~~~~~~~~~g~~t~v~~~g~~LSgG 486 (1156)
++|++|++.++.+ |++||+.++... ++++.++.++..++.+. ......+||||
T Consensus 79 i~~~~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-----------~~~~~~~LS~G 147 (242)
T TIGR03411 79 IGRKFQKPTVFENLTVFENLELALPRDKSVFASLFFRLSAEEKDRIEEVLETIGLADE-----------ADRLAGLLSHG 147 (242)
T ss_pred eeEeccccccCCCCCHHHHHHHhhhcccccccccccccHHHHHHHHHHHHHHcCCchh-----------hcCChhhCCHH
Confidence 6899999988875 999999875321 12234455555555432 33556789999
Q ss_pred HHHHHHHHHhhccCCCeeeeeCCCCCcCHHHHHHHHHHHHh-cCCCEEEEEccCCCccc-cCCEEEEEeCCeEEEccChH
Q 037346 487 QKQRIQIARPLYQDADIFLLDDPFSPVDDHTGAHLFKFCWV-SSSKTVIYATHQVEFLP-AADLILVIKDGKITQAGKYS 564 (1156)
Q Consensus 487 qkqRi~lAral~~~~~illlDep~s~lD~~~~~~i~~~~~~-~~~~tvi~vtH~~~~~~-~~d~i~~l~~G~i~~~g~~~ 564 (1156)
||||++||||++.+|+++||||||++||+.+++.+.+.+.. .+++|+|++||+++.+. .||+|++|++|++++.|+++
T Consensus 148 e~qrv~laral~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~g~~~~~~~~~ 227 (242)
T TIGR03411 148 QKQWLEIGMLLMQDPKLLLLDEPVAGMTDEETEKTAELLKSLAGKHSVVVVEHDMEFVRSIADKVTVLHQGSVLAEGSLD 227 (242)
T ss_pred HHHHHHHHHHHhcCCCEEEecCCccCCCHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEEEECCeEEeeCCHH
Confidence 99999999999999999999999999999999998876644 34689999999999986 59999999999999999988
Q ss_pred HHHh
Q 037346 565 DILN 568 (1156)
Q Consensus 565 ~l~~ 568 (1156)
++..
T Consensus 228 ~~~~ 231 (242)
T TIGR03411 228 QVQA 231 (242)
T ss_pred HHhc
Confidence 8764
|
Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity. |
| >PRK13642 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.7e-37 Score=341.52 Aligned_cols=202 Identities=26% Similarity=0.392 Sum_probs=172.3
Q ss_pred cEEEeeeEEEeCCCCCCCccccceEEeeCCeEEEEEcCCCCChHHHHHHHhCCCCCCCcEEEEcCe-------------E
Q 037346 357 AIEIIDGSFSWDFSSPNPTLRNINLKVFHGMRVAVCGTVGSGKSSCLSCILGGVPKESGIIRLCGT-------------K 423 (1156)
Q Consensus 357 ~i~~~~~~f~~~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKSTll~~i~g~~~~~~G~i~~~g~-------------~ 423 (1156)
.++++|++++|+.....++|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.++|. +
T Consensus 4 ~l~~~~l~~~~~~~~~~~~l~~v~l~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~i~~~~~~~~~~~i 83 (277)
T PRK13642 4 ILEVENLVFKYEKESDVNQLNGVSFSITKGEWVSIIGQNGSGKSTTARLIDGLFEEFEGKVKIDGELLTAENVWNLRRKI 83 (277)
T ss_pred eEEEEEEEEEcCCCCcCeeeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCCEEEECCEECCcCCHHHHhcce
Confidence 589999999997432346999999999999999999999999999999999999999999999872 6
Q ss_pred EEEecCCc--CCCccHHHHhhcCCC---CCH----HHHHHHHHHhCCchhhhhCCCCCccccccCCCCCCHHHHHHHHHH
Q 037346 424 AYVAQSPW--IQSGKIEENILFGKE---MDR----ERYERVLEACSLKKDLEVLPFGDQTIIGERGINLSGGQKQRIQIA 494 (1156)
Q Consensus 424 ~~v~Q~~~--~~~~ti~eni~~~~~---~~~----~~~~~~~~~~~l~~~~~~~~~g~~t~v~~~g~~LSgGqkqRi~lA 494 (1156)
+|++|+|. ++..|+.|||.++.. ... ++++++++.+++.+... .....||||||||++||
T Consensus 84 ~~v~q~~~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-----------~~~~~LS~G~~qrv~lA 152 (277)
T PRK13642 84 GMVFQNPDNQFVGATVEDDVAFGMENQGIPREEMIKRVDEALLAVNMLDFKT-----------REPARLSGGQKQRVAVA 152 (277)
T ss_pred EEEEECHHHhhccCCHHHHHHhhHHHcCCCHHHHHHHHHHHHHHCCCHhHhh-----------CCcccCCHHHHHHHHHH
Confidence 99999984 667899999987521 222 34566777777754433 34568999999999999
Q ss_pred HhhccCCCeeeeeCCCCCcCHHHHHHHHHHHHh--c-CCCEEEEEccCCCccccCCEEEEEeCCeEEEccChHHHHhc
Q 037346 495 RPLYQDADIFLLDDPFSPVDDHTGAHLFKFCWV--S-SSKTVIYATHQVEFLPAADLILVIKDGKITQAGKYSDILNS 569 (1156)
Q Consensus 495 ral~~~~~illlDep~s~lD~~~~~~i~~~~~~--~-~~~tvi~vtH~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~ 569 (1156)
|||+.+|+++||||||++||+.+++.+.+.+.. . .|.|+|++||+++.+..||+|++|++|++++.|+++++...
T Consensus 153 raL~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~~g~tiil~sH~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~ 230 (277)
T PRK13642 153 GIIALRPEIIILDESTSMLDPTGRQEIMRVIHEIKEKYQLTVLSITHDLDEAASSDRILVMKAGEIIKEAAPSELFAT 230 (277)
T ss_pred HHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhCCEEEEEECCEEEEeCCHHHHhcC
Confidence 999999999999999999999999998876543 2 38999999999999878999999999999999999888653
|
|
| >PRK13645 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.7e-37 Score=344.35 Aligned_cols=203 Identities=25% Similarity=0.377 Sum_probs=167.8
Q ss_pred ccEEEeeeEEEeCCCC--CCCccccceEEeeCCeEEEEEcCCCCChHHHHHHHhCCCCCCCcEEEEcC------------
Q 037346 356 TAIEIIDGSFSWDFSS--PNPTLRNINLKVFHGMRVAVCGTVGSGKSSCLSCILGGVPKESGIIRLCG------------ 421 (1156)
Q Consensus 356 ~~i~~~~~~f~~~~~~--~~~~l~~i~l~i~~g~~~~ivG~~GsGKSTll~~i~g~~~~~~G~i~~~g------------ 421 (1156)
+.|+++|++++|+... ..++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|
T Consensus 5 ~~l~i~nl~~~~~~~~~~~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~ 84 (289)
T PRK13645 5 KDIILDNVSYTYAKKTPFEFKALNNTSLTFKKNKVTCVIGTTGSGKSTMIQLTNGLIISETGQTIVGDYAIPANLKKIKE 84 (289)
T ss_pred ceEEEEEEEEEeCCCCccccceeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEcccccccccc
Confidence 4589999999996321 13599999999999999999999999999999999999999999999876
Q ss_pred ------eEEEEecCCc--CCCccHHHHhhcCCC---CCH----HHHHHHHHHhCCchhhhhCCCCCccccccCCCCCCHH
Q 037346 422 ------TKAYVAQSPW--IQSGKIEENILFGKE---MDR----ERYERVLEACSLKKDLEVLPFGDQTIIGERGINLSGG 486 (1156)
Q Consensus 422 ------~~~~v~Q~~~--~~~~ti~eni~~~~~---~~~----~~~~~~~~~~~l~~~~~~~~~g~~t~v~~~g~~LSgG 486 (1156)
.++|++|+|. ++..|++||+.|+.. ... ++..++++.+++... ..++.+.+||||
T Consensus 85 ~~~~~~~i~~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~ll~~~~L~~~----------~~~~~~~~LS~G 154 (289)
T PRK13645 85 VKRLRKEIGLVFQFPEYQLFQETIEKDIAFGPVNLGENKQEAYKKVPELLKLVQLPED----------YVKRSPFELSGG 154 (289)
T ss_pred HHHHhccEEEEEeCcchhhhhhHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCChh----------HhcCChhhCCHH
Confidence 2689999984 567799999987632 222 223345555555221 123556789999
Q ss_pred HHHHHHHHHhhccCCCeeeeeCCCCCcCHHHHHHHHHHHHh---cCCCEEEEEccCCCccc-cCCEEEEEeCCeEEEccC
Q 037346 487 QKQRIQIARPLYQDADIFLLDDPFSPVDDHTGAHLFKFCWV---SSSKTVIYATHQVEFLP-AADLILVIKDGKITQAGK 562 (1156)
Q Consensus 487 qkqRi~lAral~~~~~illlDep~s~lD~~~~~~i~~~~~~---~~~~tvi~vtH~~~~~~-~~d~i~~l~~G~i~~~g~ 562 (1156)
||||++|||||+.+|++|||||||++||+.+++.+.+.+.. ..|+|+|++||+++.+. .||+|++|++|++++.|+
T Consensus 155 q~qrv~laral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiiiisH~~~~~~~~~d~i~~l~~G~i~~~g~ 234 (289)
T PRK13645 155 QKRRVALAGIIAMDGNTLVLDEPTGGLDPKGEEDFINLFERLNKEYKKRIIMVTHNMDQVLRIADEVIVMHEGKVISIGS 234 (289)
T ss_pred HHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEECCEEEEeCC
Confidence 99999999999999999999999999999999988776543 24889999999999875 599999999999999999
Q ss_pred hHHHHh
Q 037346 563 YSDILN 568 (1156)
Q Consensus 563 ~~~l~~ 568 (1156)
++++.+
T Consensus 235 ~~~~~~ 240 (289)
T PRK13645 235 PFEIFS 240 (289)
T ss_pred HHHHhc
Confidence 888764
|
|
| >PRK11231 fecE iron-dicitrate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.7e-37 Score=338.55 Aligned_cols=198 Identities=24% Similarity=0.409 Sum_probs=170.0
Q ss_pred cEEEeeeEEEeCCCCCCCccccceEEeeCCeEEEEEcCCCCChHHHHHHHhCCCCCCCcEEEEcCe-------------E
Q 037346 357 AIEIIDGSFSWDFSSPNPTLRNINLKVFHGMRVAVCGTVGSGKSSCLSCILGGVPKESGIIRLCGT-------------K 423 (1156)
Q Consensus 357 ~i~~~~~~f~~~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKSTll~~i~g~~~~~~G~i~~~g~-------------~ 423 (1156)
.++++|++++|+ ++++|+|+||++++|++++|+|+||||||||+++|+|+++|++|+|.++|. +
T Consensus 2 ~l~~~~l~~~~~---~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i 78 (255)
T PRK11231 2 TLRTENLTVGYG---TKRILNDLSLSLPTGKITALIGPNGCGKSTLLKCFARLLTPQSGTVFLGDKPISMLSSRQLARRL 78 (255)
T ss_pred EEEEEeEEEEEC---CEEEEeeeeeEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCCcEEEECCEEhHHCCHHHHhhhe
Confidence 378999999996 357999999999999999999999999999999999999999999999873 7
Q ss_pred EEEecCCcCCCc-cHHHHhhcCCC-----C------CHHHHHHHHHHhCCchhhhhCCCCCccccccCCCCCCHHHHHHH
Q 037346 424 AYVAQSPWIQSG-KIEENILFGKE-----M------DRERYERVLEACSLKKDLEVLPFGDQTIIGERGINLSGGQKQRI 491 (1156)
Q Consensus 424 ~~v~Q~~~~~~~-ti~eni~~~~~-----~------~~~~~~~~~~~~~l~~~~~~~~~g~~t~v~~~g~~LSgGqkqRi 491 (1156)
+|++|++.++.+ |+.||+.++.. + +.++.+++++.+++.+..+ ..+..||||||||+
T Consensus 79 ~~~~q~~~~~~~~tv~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-----------~~~~~LS~G~~qrv 147 (255)
T PRK11231 79 ALLPQHHLTPEGITVRELVAYGRSPWLSLWGRLSAEDNARVNQAMEQTRINHLAD-----------RRLTDLSGGQRQRA 147 (255)
T ss_pred EEecccCCCCCCccHHHHHHhccchhhhhccCCCHHHHHHHHHHHHHcCCHHHHc-----------CCcccCCHHHHHHH
Confidence 999999987765 99999988631 1 1234556666667654333 44578999999999
Q ss_pred HHHHhhccCCCeeeeeCCCCCcCHHHHHHHHHHHHh--cCCCEEEEEccCCCccc-cCCEEEEEeCCeEEEccChHHHHh
Q 037346 492 QIARPLYQDADIFLLDDPFSPVDDHTGAHLFKFCWV--SSSKTVIYATHQVEFLP-AADLILVIKDGKITQAGKYSDILN 568 (1156)
Q Consensus 492 ~lAral~~~~~illlDep~s~lD~~~~~~i~~~~~~--~~~~tvi~vtH~~~~~~-~~d~i~~l~~G~i~~~g~~~~l~~ 568 (1156)
+||||++.+|+++||||||++||+.+++.+.+.+.. .+|+|+|++||+++.+. .||++++|++|+++..|+++++..
T Consensus 148 ~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~l~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~ 227 (255)
T PRK11231 148 FLAMVLAQDTPVVLLDEPTTYLDINHQVELMRLMRELNTQGKTVVTVLHDLNQASRYCDHLVVLANGHVMAQGTPEEVMT 227 (255)
T ss_pred HHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHhcCEEEEEECCeEEEEcCHHHhcC
Confidence 999999999999999999999999999988876643 35889999999999876 599999999999999999888764
|
|
| >PRK15079 oligopeptide ABC transporter ATP-binding protein OppF; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.6e-37 Score=347.45 Aligned_cols=205 Identities=24% Similarity=0.412 Sum_probs=171.6
Q ss_pred ccEEEeeeEEEeCCCC----------CCCccccceEEeeCCeEEEEEcCCCCChHHHHHHHhCCCCCCCcEEEEcCe---
Q 037346 356 TAIEIIDGSFSWDFSS----------PNPTLRNINLKVFHGMRVAVCGTVGSGKSSCLSCILGGVPKESGIIRLCGT--- 422 (1156)
Q Consensus 356 ~~i~~~~~~f~~~~~~----------~~~~l~~i~l~i~~g~~~~ivG~~GsGKSTll~~i~g~~~~~~G~i~~~g~--- 422 (1156)
..++++|++++|+... ...+++|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.++|.
T Consensus 7 ~~l~v~~l~~~~~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~lvG~sGsGKSTLlk~i~Gl~~p~~G~I~~~G~~i~ 86 (331)
T PRK15079 7 VLLEVADLKVHFDIKDGKQWFWQPPKTLKAVDGVTLRLYEGETLGVVGESGCGKSTFARAIIGLVKATDGEVAWLGKDLL 86 (331)
T ss_pred ceEEEeCeEEEECCCCccccccccCCceEEEeeEEEEEcCCCEEEEECCCCCCHHHHHHHHHCCCCCCCcEEEECCEECC
Confidence 4699999999996321 246899999999999999999999999999999999999999999999873
Q ss_pred -------------EEEEecCCc--CC-CccHHHHhhcCC-----CCCH----HHHHHHHHHhCCchhhhhCCCCCccccc
Q 037346 423 -------------KAYVAQSPW--IQ-SGKIEENILFGK-----EMDR----ERYERVLEACSLKKDLEVLPFGDQTIIG 477 (1156)
Q Consensus 423 -------------~~~v~Q~~~--~~-~~ti~eni~~~~-----~~~~----~~~~~~~~~~~l~~~~~~~~~g~~t~v~ 477 (1156)
++||+|+|. ++ ..||.|||.++. ..+. ++..++++.+++.++. ..
T Consensus 87 ~~~~~~~~~~r~~i~~v~Q~~~~~l~p~~tv~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~vgl~~~~----------~~ 156 (331)
T PRK15079 87 GMKDDEWRAVRSDIQMIFQDPLASLNPRMTIGEIIAEPLRTYHPKLSRQEVKDRVKAMMLKVGLLPNL----------IN 156 (331)
T ss_pred cCCHHHHHHHhCceEEEecCchhhcCCCCCHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCChHH----------hc
Confidence 699999983 54 579999997531 1232 3345567777774321 23
Q ss_pred cCCCCCCHHHHHHHHHHHhhccCCCeeeeeCCCCCcCHHHHHHHHHHHHh---cCCCEEEEEccCCCcccc-CCEEEEEe
Q 037346 478 ERGINLSGGQKQRIQIARPLYQDADIFLLDDPFSPVDDHTGAHLFKFCWV---SSSKTVIYATHQVEFLPA-ADLILVIK 553 (1156)
Q Consensus 478 ~~g~~LSgGqkqRi~lAral~~~~~illlDep~s~lD~~~~~~i~~~~~~---~~~~tvi~vtH~~~~~~~-~d~i~~l~ 553 (1156)
..+.+|||||||||+|||||+.+|+++|+||||++||+.++.++.+.+.. ..|.|+|+||||++.+.. ||+|++|+
T Consensus 157 ~~p~~LSgG~~QRv~iArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~~~til~iTHdl~~~~~~~dri~vl~ 236 (331)
T PRK15079 157 RYPHEFSGGQCQRIGIARALILEPKLIICDEPVSALDVSIQAQVVNLLQQLQREMGLSLIFIAHDLAVVKHISDRVLVMY 236 (331)
T ss_pred CCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEE
Confidence 45578999999999999999999999999999999999999998876643 248899999999999874 99999999
Q ss_pred CCeEEEccChHHHHhcC
Q 037346 554 DGKITQAGKYSDILNSG 570 (1156)
Q Consensus 554 ~G~i~~~g~~~~l~~~~ 570 (1156)
+|+|++.|+.+++....
T Consensus 237 ~G~ive~g~~~~i~~~~ 253 (331)
T PRK15079 237 LGHAVELGTYDEVYHNP 253 (331)
T ss_pred CCEEEEEcCHHHHHcCC
Confidence 99999999999987643
|
|
| >COG0410 LivF ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.2e-37 Score=314.40 Aligned_cols=206 Identities=28% Similarity=0.410 Sum_probs=171.1
Q ss_pred cEEEeeeEEEeCCCCCCCccccceEEeeCCeEEEEEcCCCCChHHHHHHHhCCCCCCCcEEEEcCe--------------
Q 037346 357 AIEIIDGSFSWDFSSPNPTLRNINLKVFHGMRVAVCGTVGSGKSSCLSCILGGVPKESGIIRLCGT-------------- 422 (1156)
Q Consensus 357 ~i~~~~~~f~~~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKSTll~~i~g~~~~~~G~i~~~g~-------------- 422 (1156)
.++++|++..|. +..+|+++||++++||+++|+|+||+||||||++|+|..++.+|+|.++|+
T Consensus 3 mL~v~~l~~~YG---~~~~L~gvsl~v~~Geiv~llG~NGaGKTTlLkti~Gl~~~~~G~I~~~G~dit~~p~~~r~r~G 79 (237)
T COG0410 3 MLEVENLSAGYG---KIQALRGVSLEVERGEIVALLGRNGAGKTTLLKTIMGLVRPRSGRIIFDGEDITGLPPHERARLG 79 (237)
T ss_pred ceeEEeEeeccc---ceeEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEECCeecCCCCHHHHHhCC
Confidence 578999999996 468999999999999999999999999999999999999999999999994
Q ss_pred EEEEecCCcCCC-ccHHHHhhcCCCCCHH-HHHHHHHHhCCchhhhhCCCCCccccccCCCCCCHHHHHHHHHHHhhccC
Q 037346 423 KAYVAQSPWIQS-GKIEENILFGKEMDRE-RYERVLEACSLKKDLEVLPFGDQTIIGERGINLSGGQKQRIQIARPLYQD 500 (1156)
Q Consensus 423 ~~~v~Q~~~~~~-~ti~eni~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~g~~t~v~~~g~~LSgGqkqRi~lAral~~~ 500 (1156)
++||||...+|. .||+||+..|...... +..+. .++.-.+.+|. .....+.++.+|||||+|-+||||||+++
T Consensus 80 i~~VPegR~iF~~LTVeENL~~g~~~~~~~~~~~~----~~e~v~~lFP~-Lker~~~~aG~LSGGEQQMLAiaRALm~~ 154 (237)
T COG0410 80 IAYVPEGRRIFPRLTVEENLLLGAYARRDKEAQER----DLEEVYELFPR-LKERRNQRAGTLSGGEQQMLAIARALMSR 154 (237)
T ss_pred eEeCcccccchhhCcHHHHHhhhhhcccccccccc----cHHHHHHHChh-HHHHhcCcccCCChHHHHHHHHHHHHhcC
Confidence 699999999886 4999999987432211 11110 01122233331 22234577889999999999999999999
Q ss_pred CCeeeeeCCCCCcCHHHHHHHHHHHHh---cCCCEEEEEccCCCcc-ccCCEEEEEeCCeEEEccChHHHHhcC
Q 037346 501 ADIFLLDDPFSPVDDHTGAHLFKFCWV---SSSKTVIYATHQVEFL-PAADLILVIKDGKITQAGKYSDILNSG 570 (1156)
Q Consensus 501 ~~illlDep~s~lD~~~~~~i~~~~~~---~~~~tvi~vtH~~~~~-~~~d~i~~l~~G~i~~~g~~~~l~~~~ 570 (1156)
|++|+||||+.+|-|...++|++.+.. ..|.||++|.++.... +.+||.++|++|+|+.+|+.+++.++.
T Consensus 155 PklLLLDEPs~GLaP~iv~~I~~~i~~l~~~~g~tIlLVEQn~~~Al~iaDr~yvle~Griv~~G~~~eL~~~~ 228 (237)
T COG0410 155 PKLLLLDEPSEGLAPKIVEEIFEAIKELRKEGGMTILLVEQNARFALEIADRGYVLENGRIVLSGTAAELLADP 228 (237)
T ss_pred CCEEEecCCccCcCHHHHHHHHHHHHHHHHcCCcEEEEEeccHHHHHHhhCEEEEEeCCEEEEecCHHHHhcCH
Confidence 999999999999999999999987654 2367999999999885 569999999999999999999998653
|
|
| >PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.8e-37 Score=331.76 Aligned_cols=196 Identities=23% Similarity=0.360 Sum_probs=166.1
Q ss_pred ccEEEeeeEEEeCCCCCCCccccceEEeeCCeEEEEEcCCCCChHHHHHHHhCCCCCCCcEEEEcCe-------------
Q 037346 356 TAIEIIDGSFSWDFSSPNPTLRNINLKVFHGMRVAVCGTVGSGKSSCLSCILGGVPKESGIIRLCGT------------- 422 (1156)
Q Consensus 356 ~~i~~~~~~f~~~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKSTll~~i~g~~~~~~G~i~~~g~------------- 422 (1156)
..|+++|+++.|+ ++++++|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.
T Consensus 6 ~~i~~~~l~~~~~---~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~ 82 (225)
T PRK10247 6 PLLQLQNVGYLAG---DAKILNNISFSLRAGEFKLITGPSGCGKSTLLKIVASLISPTSGTLLFEGEDISTLKPEIYRQQ 82 (225)
T ss_pred ceEEEeccEEeeC---CceeeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCeEEECCEEcCcCCHHHHHhc
Confidence 3699999999996 357999999999999999999999999999999999999999999999873
Q ss_pred EEEEecCCcCCCccHHHHhhcCCC-----CCHHHHHHHHHHhCCchhhhhCCCCCccccccCCCCCCHHHHHHHHHHHhh
Q 037346 423 KAYVAQSPWIQSGKIEENILFGKE-----MDRERYERVLEACSLKKDLEVLPFGDQTIIGERGINLSGGQKQRIQIARPL 497 (1156)
Q Consensus 423 ~~~v~Q~~~~~~~ti~eni~~~~~-----~~~~~~~~~~~~~~l~~~~~~~~~g~~t~v~~~g~~LSgGqkqRi~lAral 497 (1156)
++|++|++.+++.|++||+.++.. .++++..+.++.+++.+. .....+.+||||||||++|||||
T Consensus 83 i~~~~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~l~~~~l~~~----------~~~~~~~~LS~G~~qrv~laral 152 (225)
T PRK10247 83 VSYCAQTPTLFGDTVYDNLIFPWQIRNQQPDPAIFLDDLERFALPDT----------ILTKNIAELSGGEKQRISLIRNL 152 (225)
T ss_pred cEEEecccccccccHHHHHHhHHhhcCCChHHHHHHHHHHHcCCChH----------HhcCCcccCCHHHHHHHHHHHHH
Confidence 689999999998899999986421 123445566666666421 22455679999999999999999
Q ss_pred ccCCCeeeeeCCCCCcCHHHHHHHHHHHHh---cCCCEEEEEccCCCccccCCEEEEEe-CCeEEEccChH
Q 037346 498 YQDADIFLLDDPFSPVDDHTGAHLFKFCWV---SSSKTVIYATHQVEFLPAADLILVIK-DGKITQAGKYS 564 (1156)
Q Consensus 498 ~~~~~illlDep~s~lD~~~~~~i~~~~~~---~~~~tvi~vtH~~~~~~~~d~i~~l~-~G~i~~~g~~~ 564 (1156)
+++|+++||||||++||+.+.+.+.+.+.. ..|+|+|++||+++.++.||++++|+ ++..+++|+|+
T Consensus 153 ~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvii~sh~~~~~~~~d~i~~l~~~~~~~~~~~~~ 223 (225)
T PRK10247 153 QFMPKVLLLDEITSALDESNKHNVNEIIHRYVREQNIAVLWVTHDKDEINHADKVITLQPHAGEMQEARYE 223 (225)
T ss_pred hcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEECChHHHHhCCEEEEEecccchHhhhhhc
Confidence 999999999999999999999988776543 24789999999999988899999995 66667778774
|
|
| >PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.4e-37 Score=338.62 Aligned_cols=198 Identities=28% Similarity=0.398 Sum_probs=168.1
Q ss_pred cEEEeeeEEEeCCCCCCCccccceEEeeCCeEEEEEcCCCCChHHHHHHHhCCCCCCCcEEEEcC---------------
Q 037346 357 AIEIIDGSFSWDFSSPNPTLRNINLKVFHGMRVAVCGTVGSGKSSCLSCILGGVPKESGIIRLCG--------------- 421 (1156)
Q Consensus 357 ~i~~~~~~f~~~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKSTll~~i~g~~~~~~G~i~~~g--------------- 421 (1156)
.++++|+++.|+ ++++|+|+||+|++|++++|+||||||||||+++|+|+++|++|+|.++|
T Consensus 3 ~l~~~~l~~~~~---~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 79 (250)
T PRK11264 3 AIEVKNLVKKFH---GQTVLHGIDLEVKPGEVVAIIGPSGSGKTTLLRCINLLEQPEAGTIRVGDITIDTARSLSQQKGL 79 (250)
T ss_pred cEEEeceEEEEC---CeeeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEccccccccchhhH
Confidence 488999999996 34799999999999999999999999999999999999999999998875
Q ss_pred ------eEEEEecCCcCCC-ccHHHHhhcCC----CCC----HHHHHHHHHHhCCchhhhhCCCCCccccccCCCCCCHH
Q 037346 422 ------TKAYVAQSPWIQS-GKIEENILFGK----EMD----RERYERVLEACSLKKDLEVLPFGDQTIIGERGINLSGG 486 (1156)
Q Consensus 422 ------~~~~v~Q~~~~~~-~ti~eni~~~~----~~~----~~~~~~~~~~~~l~~~~~~~~~g~~t~v~~~g~~LSgG 486 (1156)
.++|++|++.++. .|++||+.++. ..+ .++..++++..++.... ...+.+||||
T Consensus 80 ~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~-----------~~~~~~LS~G 148 (250)
T PRK11264 80 IRQLRQHVGFVFQNFNLFPHRTVLENIIEGPVIVKGEPKEEATARARELLAKVGLAGKE-----------TSYPRRLSGG 148 (250)
T ss_pred HHHhhhhEEEEecCcccCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCcchh-----------hCChhhCChH
Confidence 2689999998875 69999997642 122 12344556666654322 3456799999
Q ss_pred HHHHHHHHHhhccCCCeeeeeCCCCCcCHHHHHHHHHHHHh--cCCCEEEEEccCCCccc-cCCEEEEEeCCeEEEccCh
Q 037346 487 QKQRIQIARPLYQDADIFLLDDPFSPVDDHTGAHLFKFCWV--SSSKTVIYATHQVEFLP-AADLILVIKDGKITQAGKY 563 (1156)
Q Consensus 487 qkqRi~lAral~~~~~illlDep~s~lD~~~~~~i~~~~~~--~~~~tvi~vtH~~~~~~-~~d~i~~l~~G~i~~~g~~ 563 (1156)
||||++||||++.+|+++||||||++||+.+++.+.+.+.. .+|+|+|++||+++.+. .||+|++|++|++++.|++
T Consensus 149 q~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tvi~~tH~~~~~~~~~d~i~~l~~G~i~~~~~~ 228 (250)
T PRK11264 149 QQQRVAIARALAMRPEVILFDEPTSALDPELVGEVLNTIRQLAQEKRTMVIVTHEMSFARDVADRAIFMDQGRIVEQGPA 228 (250)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEECCEEEEeCCH
Confidence 99999999999999999999999999999999988876543 35889999999999886 4999999999999999999
Q ss_pred HHHHh
Q 037346 564 SDILN 568 (1156)
Q Consensus 564 ~~l~~ 568 (1156)
+++.+
T Consensus 229 ~~~~~ 233 (250)
T PRK11264 229 KALFA 233 (250)
T ss_pred HHHhc
Confidence 88764
|
|
| >cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.4e-37 Score=328.67 Aligned_cols=188 Identities=29% Similarity=0.431 Sum_probs=160.9
Q ss_pred EEEeeeEEEeCCCCCCCccccceEEeeCCeEEEEEcCCCCChHHHHHHHhCCCCCCCcEEEEcCe-----------EEEE
Q 037346 358 IEIIDGSFSWDFSSPNPTLRNINLKVFHGMRVAVCGTVGSGKSSCLSCILGGVPKESGIIRLCGT-----------KAYV 426 (1156)
Q Consensus 358 i~~~~~~f~~~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKSTll~~i~g~~~~~~G~i~~~g~-----------~~~v 426 (1156)
|+++|++++|+. .. .|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|. ++|+
T Consensus 1 i~~~~l~~~~~~---~~--~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~~~~~~~~~~i~~~ 75 (211)
T cd03298 1 VRLDKIRFSYGE---QP--MHFDLTFAQGEITAIVGPSGSGKSTLLNLIAGFETPQSGRVLINGVDVTAAPPADRPVSML 75 (211)
T ss_pred CEEEeEEEEeCC---Ee--cceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcCcCCHhHccEEEE
Confidence 468999999962 22 3999999999999999999999999999999999999999999883 7999
Q ss_pred ecCCcCCCc-cHHHHhhcCCC-------CCHHHHHHHHHHhCCchhhhhCCCCCccccccCCCCCCHHHHHHHHHHHhhc
Q 037346 427 AQSPWIQSG-KIEENILFGKE-------MDRERYERVLEACSLKKDLEVLPFGDQTIIGERGINLSGGQKQRIQIARPLY 498 (1156)
Q Consensus 427 ~Q~~~~~~~-ti~eni~~~~~-------~~~~~~~~~~~~~~l~~~~~~~~~g~~t~v~~~g~~LSgGqkqRi~lAral~ 498 (1156)
+|+|.++.. |++||+.++.. .++++..++++.+++.+..... ..+||||||||++||||++
T Consensus 76 ~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-----------~~~LS~G~~qrv~ia~al~ 144 (211)
T cd03298 76 FQENNLFAHLTVEQNVGLGLSPGLKLTAEDRQAIEVALARVGLAGLEKRL-----------PGELSGGERQRVALARVLV 144 (211)
T ss_pred ecccccCCCCcHHHHHhcccccccCccHHHHHHHHHHHHHcCCHHHHhCC-----------cccCCHHHHHHHHHHHHHh
Confidence 999998865 99999987632 1234566778888876555433 3589999999999999999
Q ss_pred cCCCeeeeeCCCCCcCHHHHHHHHHHHHh---cCCCEEEEEccCCCcccc-CCEEEEEeCCeEEEcc
Q 037346 499 QDADIFLLDDPFSPVDDHTGAHLFKFCWV---SSSKTVIYATHQVEFLPA-ADLILVIKDGKITQAG 561 (1156)
Q Consensus 499 ~~~~illlDep~s~lD~~~~~~i~~~~~~---~~~~tvi~vtH~~~~~~~-~d~i~~l~~G~i~~~g 561 (1156)
.+|+++||||||++||+.+++.+.+.+.. ..++|+|++||+++.+.. ||++++|++|++++.|
T Consensus 145 ~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~~ 211 (211)
T cd03298 145 RDKPVLLLDEPFAALDPALRAEMLDLVLDLHAETKMTVLMVTHQPEDAKRLAQRVVFLDNGRIAAQG 211 (211)
T ss_pred cCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHhhhCEEEEEECCEEeecC
Confidence 99999999999999999999998876643 248899999999999865 9999999999998654
|
Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK14245 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.8e-37 Score=338.12 Aligned_cols=203 Identities=27% Similarity=0.384 Sum_probs=170.9
Q ss_pred cEEEeeeEEEeCCCCCCCccccceEEeeCCeEEEEEcCCCCChHHHHHHHhCC---CCC--CCcEEEEcC----------
Q 037346 357 AIEIIDGSFSWDFSSPNPTLRNINLKVFHGMRVAVCGTVGSGKSSCLSCILGG---VPK--ESGIIRLCG---------- 421 (1156)
Q Consensus 357 ~i~~~~~~f~~~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKSTll~~i~g~---~~~--~~G~i~~~g---------- 421 (1156)
.++++|+++.|+ ++++|+|+||++++||+++|+||||||||||+++|+|+ ++| ++|+|.++|
T Consensus 3 ~l~~~~~~~~~~---~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~ 79 (250)
T PRK14245 3 KIDARDVNFWYG---DFHALKGISMEIEEKSVVAFIGPSGCGKSTFLRLFNRMNDLIPATRLEGEIRIDGRNIYDKGVQV 79 (250)
T ss_pred EEEEEEEEEEEC---CEeEEeeeeEEEeCCCEEEEECCCCCCHHHHHHHHhhhhcccCCCCCceEEEECCEecccccccH
Confidence 589999999996 35699999999999999999999999999999999996 454 589999886
Q ss_pred -----eEEEEecCCcCCCccHHHHhhcCCC----CC----HHHHHHHHHHhCCchhhhhCCCCCccccccCCCCCCHHHH
Q 037346 422 -----TKAYVAQSPWIQSGKIEENILFGKE----MD----RERYERVLEACSLKKDLEVLPFGDQTIIGERGINLSGGQK 488 (1156)
Q Consensus 422 -----~~~~v~Q~~~~~~~ti~eni~~~~~----~~----~~~~~~~~~~~~l~~~~~~~~~g~~t~v~~~g~~LSgGqk 488 (1156)
.++|+||+|.++..|++||+.++.. .. +++.+++++.+++.+.+. +...+.+.+||||||
T Consensus 80 ~~~~~~i~~v~q~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-------~~~~~~~~~LS~G~~ 152 (250)
T PRK14245 80 DELRKNVGMVFQRPNPFPKSIFENVAYGLRVNGVKDNAFIRQRVEETLKGAALWDEVK-------DKLKESAFALSGGQQ 152 (250)
T ss_pred HHHhhheEEEecCCccCcccHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHcCCCcchh-------hhhhCCcccCCHHHH
Confidence 2699999999888899999987531 11 234556677777754332 223456789999999
Q ss_pred HHHHHHHhhccCCCeeeeeCCCCCcCHHHHHHHHHHHHh-cCCCEEEEEccCCCccc-cCCEEEEEeCCeEEEccChHHH
Q 037346 489 QRIQIARPLYQDADIFLLDDPFSPVDDHTGAHLFKFCWV-SSSKTVIYATHQVEFLP-AADLILVIKDGKITQAGKYSDI 566 (1156)
Q Consensus 489 qRi~lAral~~~~~illlDep~s~lD~~~~~~i~~~~~~-~~~~tvi~vtH~~~~~~-~~d~i~~l~~G~i~~~g~~~~l 566 (1156)
||++||||++.+|+++||||||++||+.+++.+.+.+.. .+++|+|++||+++.+. .||++++|++|++++.|+++++
T Consensus 153 qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tiiivtH~~~~~~~~~d~v~~l~~G~~~~~~~~~~~ 232 (250)
T PRK14245 153 QRLCIARAMAVSPSVLLMDEPASALDPISTAKVEELIHELKKDYTIVIVTHNMQQAARVSDKTAFFYMGEMVEYDDTKKI 232 (250)
T ss_pred HHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHhhCCEEEEEECCEEEEECCHHHH
Confidence 999999999999999999999999999999998876644 35789999999999875 5999999999999999999988
Q ss_pred Hhc
Q 037346 567 LNS 569 (1156)
Q Consensus 567 ~~~ 569 (1156)
.+.
T Consensus 233 ~~~ 235 (250)
T PRK14245 233 FTN 235 (250)
T ss_pred hcC
Confidence 653
|
|
| >PRK14248 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9e-37 Score=340.39 Aligned_cols=204 Identities=25% Similarity=0.320 Sum_probs=170.0
Q ss_pred ccEEEeeeEEEeCCCCCCCccccceEEeeCCeEEEEEcCCCCChHHHHHHHhCCCC-----CCCcEEEEcC---------
Q 037346 356 TAIEIIDGSFSWDFSSPNPTLRNINLKVFHGMRVAVCGTVGSGKSSCLSCILGGVP-----KESGIIRLCG--------- 421 (1156)
Q Consensus 356 ~~i~~~~~~f~~~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKSTll~~i~g~~~-----~~~G~i~~~g--------- 421 (1156)
..++++|++++|+ +.++|+|+||+|++||+++|+|+||||||||+++|+|+++ |++|+|.++|
T Consensus 20 ~~l~~~~l~~~~~---~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~ 96 (268)
T PRK14248 20 HILEVKDLSIYYG---EKRAVNDISMDIEKHAVTALIGPSGCGKSTFLRSINRMNDLIPSARSEGEILYEGLNILDSNIN 96 (268)
T ss_pred ceEEEEEEEEEeC---CceeeeceEEEEcCCCEEEEECCCCCCHHHHHHHHHhcccccCCCCCceEEEECCEEccccccc
Confidence 4699999999996 3579999999999999999999999999999999999864 6899999876
Q ss_pred ------eEEEEecCCcCCCccHHHHhhcCCCC----C----HHHHHHHHHHhCCchhhhhCCCCCccccccCCCCCCHHH
Q 037346 422 ------TKAYVAQSPWIQSGKIEENILFGKEM----D----RERYERVLEACSLKKDLEVLPFGDQTIIGERGINLSGGQ 487 (1156)
Q Consensus 422 ------~~~~v~Q~~~~~~~ti~eni~~~~~~----~----~~~~~~~~~~~~l~~~~~~~~~g~~t~v~~~g~~LSgGq 487 (1156)
.++|++|++.+++.|++||+.++... . +++..+.++.+++...+. ...+..+.+|||||
T Consensus 97 ~~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-------~~~~~~~~~LSgGq 169 (268)
T PRK14248 97 VVNLRREIGMVFQKPNPFPKSIYNNITHALKYAGERRKSVLDEIVEESLTKAALWDEVK-------DRLHSSALSLSGGQ 169 (268)
T ss_pred HHHHhccEEEEecCCccCcccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCCcchH-------HHHhcCcccCCHHH
Confidence 26899999999888999999875211 1 123444555555542221 22356678999999
Q ss_pred HHHHHHHHhhccCCCeeeeeCCCCCcCHHHHHHHHHHHHh-cCCCEEEEEccCCCccc-cCCEEEEEeCCeEEEccChHH
Q 037346 488 KQRIQIARPLYQDADIFLLDDPFSPVDDHTGAHLFKFCWV-SSSKTVIYATHQVEFLP-AADLILVIKDGKITQAGKYSD 565 (1156)
Q Consensus 488 kqRi~lAral~~~~~illlDep~s~lD~~~~~~i~~~~~~-~~~~tvi~vtH~~~~~~-~~d~i~~l~~G~i~~~g~~~~ 565 (1156)
|||++|||||+.+|+++||||||++||+.+++.+.+.+.. .+++|+|++||+++.+. .||+|++|++|++++.|++++
T Consensus 170 ~qrl~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tiii~tH~~~~~~~~~d~v~~l~~G~i~~~~~~~~ 249 (268)
T PRK14248 170 QQRLCIARTLAMKPAVLLLDEPASALDPISNAKIEELITELKEEYSIIIVTHNMQQALRVSDRTAFFLNGDLVEYDQTEQ 249 (268)
T ss_pred HHHHHHHHHHhCCCCEEEEcCCCcccCHHHHHHHHHHHHHHhcCCEEEEEEeCHHHHHHhCCEEEEEECCEEEEeCCHHH
Confidence 9999999999999999999999999999999988776644 34689999999999875 599999999999999999988
Q ss_pred HHhc
Q 037346 566 ILNS 569 (1156)
Q Consensus 566 l~~~ 569 (1156)
+...
T Consensus 250 ~~~~ 253 (268)
T PRK14248 250 IFTS 253 (268)
T ss_pred HHhC
Confidence 7653
|
|
| >PRK14237 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-36 Score=338.77 Aligned_cols=203 Identities=27% Similarity=0.349 Sum_probs=173.2
Q ss_pred ccEEEeeeEEEeCCCCCCCccccceEEeeCCeEEEEEcCCCCChHHHHHHHhCCCC-----CCCcEEEEcC---------
Q 037346 356 TAIEIIDGSFSWDFSSPNPTLRNINLKVFHGMRVAVCGTVGSGKSSCLSCILGGVP-----KESGIIRLCG--------- 421 (1156)
Q Consensus 356 ~~i~~~~~~f~~~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKSTll~~i~g~~~-----~~~G~i~~~g--------- 421 (1156)
..++++|++++|+ ++++|+|+||++++||+++|+||||||||||+++|+|+++ |++|+|.++|
T Consensus 19 ~~l~~~nl~~~~~---~~~il~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~ 95 (267)
T PRK14237 19 IALSTKDLHVYYG---KKEAIKGIDMQFEKNKITALIGPSGSGKSTYLRSLNRMNDTIDIARVTGQILYRGIDINRKEIN 95 (267)
T ss_pred eEEEEeeEEEEEC---CeeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhccCccCCCCcceEEEECCEEcccccCC
Confidence 4699999999995 3579999999999999999999999999999999999996 5799999887
Q ss_pred ------eEEEEecCCcCCCccHHHHhhcCCC----CC----HHHHHHHHHHhCCchhhhhCCCCCccccccCCCCCCHHH
Q 037346 422 ------TKAYVAQSPWIQSGKIEENILFGKE----MD----RERYERVLEACSLKKDLEVLPFGDQTIIGERGINLSGGQ 487 (1156)
Q Consensus 422 ------~~~~v~Q~~~~~~~ti~eni~~~~~----~~----~~~~~~~~~~~~l~~~~~~~~~g~~t~v~~~g~~LSgGq 487 (1156)
.++|++|++.++..|++||+.++.. .+ +++..++++.+++.+.+. +..++.+.+|||||
T Consensus 96 ~~~~~~~i~~v~q~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i~-------~~~~~~~~~LS~G~ 168 (267)
T PRK14237 96 VYEMRKHIGMVFQRPNPFAKSIYENITFALERAGVKDKKVLDEIVETSLKQAALWDQVK-------DDLHKSALTLSGGQ 168 (267)
T ss_pred hHHHhcceEEEecCCccccccHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCCchhh-------hhhcCCcccCCHHH
Confidence 2699999999988999999987531 11 234556677777754332 23456778999999
Q ss_pred HHHHHHHHhhccCCCeeeeeCCCCCcCHHHHHHHHHHHHh-cCCCEEEEEccCCCccc-cCCEEEEEeCCeEEEccChHH
Q 037346 488 KQRIQIARPLYQDADIFLLDDPFSPVDDHTGAHLFKFCWV-SSSKTVIYATHQVEFLP-AADLILVIKDGKITQAGKYSD 565 (1156)
Q Consensus 488 kqRi~lAral~~~~~illlDep~s~lD~~~~~~i~~~~~~-~~~~tvi~vtH~~~~~~-~~d~i~~l~~G~i~~~g~~~~ 565 (1156)
|||++||||++.+|+++||||||++||+.+.+.+.+.+.. .++.|+|++||+++.+. .||++++|++|++++.|++++
T Consensus 169 ~qrl~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~ 248 (267)
T PRK14237 169 QQRLCIARAIAVKPDILLMDEPASALDPISTMQLEETMFELKKNYTIIIVTHNMQQAARASDYTAFFYLGDLIEYDKTRN 248 (267)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhcCEEEEEECCEEEEeCCHHH
Confidence 9999999999999999999999999999999988876644 34689999999999875 599999999999999999988
Q ss_pred HHh
Q 037346 566 ILN 568 (1156)
Q Consensus 566 l~~ 568 (1156)
+..
T Consensus 249 ~~~ 251 (267)
T PRK14237 249 IFT 251 (267)
T ss_pred Hhc
Confidence 864
|
|
| >PRK10575 iron-hydroxamate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.8e-37 Score=339.67 Aligned_cols=199 Identities=26% Similarity=0.341 Sum_probs=170.3
Q ss_pred ccEEEeeeEEEeCCCCCCCccccceEEeeCCeEEEEEcCCCCChHHHHHHHhCCCCCCCcEEEEcCe-------------
Q 037346 356 TAIEIIDGSFSWDFSSPNPTLRNINLKVFHGMRVAVCGTVGSGKSSCLSCILGGVPKESGIIRLCGT------------- 422 (1156)
Q Consensus 356 ~~i~~~~~~f~~~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKSTll~~i~g~~~~~~G~i~~~g~------------- 422 (1156)
..++++|+++.|+ ++++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.
T Consensus 10 ~~l~i~~l~~~~~---~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~ 86 (265)
T PRK10575 10 TTFALRNVSFRVP---GRTLLHPLSLTFPAGKVTGLIGHNGSGKSTLLKMLGRHQPPSEGEILLDAQPLESWSSKAFARK 86 (265)
T ss_pred ceEEEeeEEEEEC---CEEEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCCCEEEECCEehhhCCHHHHhhh
Confidence 4699999999996 347999999999999999999999999999999999999999999999882
Q ss_pred EEEEecCCcCCC-ccHHHHhhcCCC--------C---CHHHHHHHHHHhCCchhhhhCCCCCccccccCCCCCCHHHHHH
Q 037346 423 KAYVAQSPWIQS-GKIEENILFGKE--------M---DRERYERVLEACSLKKDLEVLPFGDQTIIGERGINLSGGQKQR 490 (1156)
Q Consensus 423 ~~~v~Q~~~~~~-~ti~eni~~~~~--------~---~~~~~~~~~~~~~l~~~~~~~~~g~~t~v~~~g~~LSgGqkqR 490 (1156)
++|++|++.++. .|+.||+.++.. . .+++..++++.+++.+.+.. ...+||||||||
T Consensus 87 i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-----------~~~~LSgG~~qr 155 (265)
T PRK10575 87 VAYLPQQLPAAEGMTVRELVAIGRYPWHGALGRFGAADREKVEEAISLVGLKPLAHR-----------LVDSLSGGERQR 155 (265)
T ss_pred eEEeccCCCCCCCccHHHHHHhCcccccccccCCCHHHHHHHHHHHHHcCCHHHhcC-----------CcccCCHHHHHH
Confidence 799999986654 599999987531 1 12345667777777654433 345899999999
Q ss_pred HHHHHhhccCCCeeeeeCCCCCcCHHHHHHHHHHHHh---cCCCEEEEEccCCCccc-cCCEEEEEeCCeEEEccChHHH
Q 037346 491 IQIARPLYQDADIFLLDDPFSPVDDHTGAHLFKFCWV---SSSKTVIYATHQVEFLP-AADLILVIKDGKITQAGKYSDI 566 (1156)
Q Consensus 491 i~lAral~~~~~illlDep~s~lD~~~~~~i~~~~~~---~~~~tvi~vtH~~~~~~-~~d~i~~l~~G~i~~~g~~~~l 566 (1156)
++||||++.+|+++||||||++||+.+++.+.+.+.. ..|.|+|++||+++.+. .||+|++|++|++++.|+.+++
T Consensus 156 v~laral~~~p~lllLDEPt~~LD~~~~~~~~~~l~~l~~~~~~tiii~sH~~~~i~~~~d~i~~l~~G~i~~~~~~~~~ 235 (265)
T PRK10575 156 AWIAMLVAQDSRCLLLDEPTSALDIAHQVDVLALVHRLSQERGLTVIAVLHDINMAARYCDYLVALRGGEMIAQGTPAEL 235 (265)
T ss_pred HHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCeEEEecCHHHh
Confidence 9999999999999999999999999999988776643 23789999999999985 5999999999999999998887
Q ss_pred Hh
Q 037346 567 LN 568 (1156)
Q Consensus 567 ~~ 568 (1156)
..
T Consensus 236 ~~ 237 (265)
T PRK10575 236 MR 237 (265)
T ss_pred cC
Confidence 64
|
|
| >PRK11124 artP arginine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-36 Score=334.99 Aligned_cols=197 Identities=25% Similarity=0.362 Sum_probs=166.7
Q ss_pred cEEEeeeEEEeCCCCCCCccccceEEeeCCeEEEEEcCCCCChHHHHHHHhCCCCCCCcEEEEcCe--------------
Q 037346 357 AIEIIDGSFSWDFSSPNPTLRNINLKVFHGMRVAVCGTVGSGKSSCLSCILGGVPKESGIIRLCGT-------------- 422 (1156)
Q Consensus 357 ~i~~~~~~f~~~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKSTll~~i~g~~~~~~G~i~~~g~-------------- 422 (1156)
.++++|+++.|+ ++++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.
T Consensus 2 ~l~~~~l~~~~~---~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 78 (242)
T PRK11124 2 SIQLNGINCFYG---AHQALFDITLDCPQGETLVLLGPSGAGKSSLLRVLNLLEMPRSGTLNIAGNHFDFSKTPSDKAIR 78 (242)
T ss_pred EEEEEeeEEEEC---CeeeEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEecccccccchhhHH
Confidence 378999999996 357999999999999999999999999999999999999999999999763
Q ss_pred -----EEEEecCCcCCC-ccHHHHhhcCC----CCC----HHHHHHHHHHhCCchhhhhCCCCCccccccCCCCCCHHHH
Q 037346 423 -----KAYVAQSPWIQS-GKIEENILFGK----EMD----RERYERVLEACSLKKDLEVLPFGDQTIIGERGINLSGGQK 488 (1156)
Q Consensus 423 -----~~~v~Q~~~~~~-~ti~eni~~~~----~~~----~~~~~~~~~~~~l~~~~~~~~~g~~t~v~~~g~~LSgGqk 488 (1156)
++|++|+|.++. .|++||+.++. ... .++..+.++..++...+ .....+||||||
T Consensus 79 ~~~~~i~~~~q~~~~~~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~-----------~~~~~~LS~G~~ 147 (242)
T PRK11124 79 ELRRNVGMVFQQYNLWPHLTVQQNLIEAPCRVLGLSKDQALARAEKLLERLRLKPYA-----------DRFPLHLSGGQQ 147 (242)
T ss_pred HHHhheEEEecCccccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhh-----------hCChhhCCHHHH
Confidence 689999998876 49999997421 111 23345556666665433 344568999999
Q ss_pred HHHHHHHhhccCCCeeeeeCCCCCcCHHHHHHHHHHHHh--cCCCEEEEEccCCCccc-cCCEEEEEeCCeEEEccChHH
Q 037346 489 QRIQIARPLYQDADIFLLDDPFSPVDDHTGAHLFKFCWV--SSSKTVIYATHQVEFLP-AADLILVIKDGKITQAGKYSD 565 (1156)
Q Consensus 489 qRi~lAral~~~~~illlDep~s~lD~~~~~~i~~~~~~--~~~~tvi~vtH~~~~~~-~~d~i~~l~~G~i~~~g~~~~ 565 (1156)
||++||||++.+|+++||||||++||+.+...+.+.+.. .+|+|+|++||+++.+. .||++++|++|++++.|++++
T Consensus 148 qrv~laral~~~p~llilDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~~~~~~d~i~~l~~g~i~~~~~~~~ 227 (242)
T PRK11124 148 QRVAIARALMMEPQVLLFDEPTAALDPEITAQIVSIIRELAETGITQVIVTHEVEVARKTASRVVYMENGHIVEQGDASC 227 (242)
T ss_pred HHHHHHHHHhcCCCEEEEcCCCCcCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCEEEEEECCEEEEeCCHHH
Confidence 999999999999999999999999999999988876543 35899999999999986 599999999999999999887
Q ss_pred HH
Q 037346 566 IL 567 (1156)
Q Consensus 566 l~ 567 (1156)
+.
T Consensus 228 ~~ 229 (242)
T PRK11124 228 FT 229 (242)
T ss_pred hc
Confidence 64
|
|
| >PRK14259 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-36 Score=338.46 Aligned_cols=203 Identities=25% Similarity=0.356 Sum_probs=170.8
Q ss_pred ccEEEeeeEEEeCCCCCCCccccceEEeeCCeEEEEEcCCCCChHHHHHHHhCCCC-----CCCcEEEEcC---------
Q 037346 356 TAIEIIDGSFSWDFSSPNPTLRNINLKVFHGMRVAVCGTVGSGKSSCLSCILGGVP-----KESGIIRLCG--------- 421 (1156)
Q Consensus 356 ~~i~~~~~~f~~~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKSTll~~i~g~~~-----~~~G~i~~~g--------- 421 (1156)
..++++|++++|+ +.++|+|+||+|++||+++|+||||||||||+++|+|+++ |++|+|.++|
T Consensus 12 ~~l~i~nl~~~~~---~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~p~~G~v~~~g~~i~~~~~~ 88 (269)
T PRK14259 12 IIISLQNVTISYG---TFEAVKNVFCDIPRGKVTALIGPSGCGKSTVLRSLNRMNDLIEGCSLKGRVLFDGTDLYDPRVD 88 (269)
T ss_pred ceEEEEeEEEEEC---CEEEEcceEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEcccccCC
Confidence 4699999999996 3569999999999999999999999999999999999987 5899999886
Q ss_pred ------eEEEEecCCcCCCccHHHHhhcCCCC---C---HHHHHHHHHHhCCchhhhhCCCCCccccccCCCCCCHHHHH
Q 037346 422 ------TKAYVAQSPWIQSGKIEENILFGKEM---D---RERYERVLEACSLKKDLEVLPFGDQTIIGERGINLSGGQKQ 489 (1156)
Q Consensus 422 ------~~~~v~Q~~~~~~~ti~eni~~~~~~---~---~~~~~~~~~~~~l~~~~~~~~~g~~t~v~~~g~~LSgGqkq 489 (1156)
.++|++|++.++..|++||+.++... . +++..++++.+++...+. ........+|||||||
T Consensus 89 ~~~~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~-------~~~~~~~~~LS~G~~q 161 (269)
T PRK14259 89 PVEVRRRIGMVFQQPNPFPKSIYENIAFGARINGYTGDMDELVERSLRKAAVWDECK-------DKLNESGYSLSGGQQQ 161 (269)
T ss_pred HHHHhhceEEEccCCccchhhHHHHHhhhhhhcCCcHHHHHHHHHHHHHhCCcchhh-------hhhCCCcccCCHHHHH
Confidence 27899999998888999999986421 1 234455666666543221 2335567899999999
Q ss_pred HHHHHHhhccCCCeeeeeCCCCCcCHHHHHHHHHHHHh-cCCCEEEEEccCCCccc-cCCEEEEEeC-----------Ce
Q 037346 490 RIQIARPLYQDADIFLLDDPFSPVDDHTGAHLFKFCWV-SSSKTVIYATHQVEFLP-AADLILVIKD-----------GK 556 (1156)
Q Consensus 490 Ri~lAral~~~~~illlDep~s~lD~~~~~~i~~~~~~-~~~~tvi~vtH~~~~~~-~~d~i~~l~~-----------G~ 556 (1156)
|++|||||+.+|+++||||||++||+.+++.+.+.+.. .+++|+|++||+++.+. .||++++|++ |+
T Consensus 162 rl~laral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~~~tiiivtH~~~~~~~~~d~i~~l~~~~~~~~~~g~~g~ 241 (269)
T PRK14259 162 RLCIARTIAIEPEVILMDEPCSALDPISTLKIEETMHELKKNFTIVIVTHNMQQAVRVSDMTAFFNAEEVEGGSGGKVGY 241 (269)
T ss_pred HHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEeccccccccccccce
Confidence 99999999999999999999999999999998876644 34689999999999875 5999999996 67
Q ss_pred EEEccChHHHHh
Q 037346 557 ITQAGKYSDILN 568 (1156)
Q Consensus 557 i~~~g~~~~l~~ 568 (1156)
+++.|+.+++.+
T Consensus 242 ~~~~~~~~~~~~ 253 (269)
T PRK14259 242 LVEFNETKKIFN 253 (269)
T ss_pred EEEeCCHHHHHh
Confidence 899999988865
|
|
| >PRK11300 livG leucine/isoleucine/valine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.7e-37 Score=338.18 Aligned_cols=198 Identities=23% Similarity=0.338 Sum_probs=167.5
Q ss_pred cEEEeeeEEEeCCCCCCCccccceEEeeCCeEEEEEcCCCCChHHHHHHHhCCCCCCCcEEEEcCe--------------
Q 037346 357 AIEIIDGSFSWDFSSPNPTLRNINLKVFHGMRVAVCGTVGSGKSSCLSCILGGVPKESGIIRLCGT-------------- 422 (1156)
Q Consensus 357 ~i~~~~~~f~~~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKSTll~~i~g~~~~~~G~i~~~g~-------------- 422 (1156)
.++++|+++.|+ +.++|+|+||++++|++++|+||||||||||+++|+|+++|++|+|.++|.
T Consensus 5 ~l~~~~l~~~~~---~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~ 81 (255)
T PRK11300 5 LLSVSGLMMRFG---GLLAVNNVNLEVREQEIVSLIGPNGAGKTTVFNCLTGFYKPTGGTILLRGQHIEGLPGHQIARMG 81 (255)
T ss_pred eEEEeeEEEEEC---CEEEEEeeeeEEcCCeEEEEECCCCCCHHHHHHHHhCCcCCCcceEEECCEECCCCCHHHHHhcC
Confidence 589999999996 357999999999999999999999999999999999999999999999883
Q ss_pred EEEEecCCcCCCc-cHHHHhhcCCC----------------CC------HHHHHHHHHHhCCchhhhhCCCCCccccccC
Q 037346 423 KAYVAQSPWIQSG-KIEENILFGKE----------------MD------RERYERVLEACSLKKDLEVLPFGDQTIIGER 479 (1156)
Q Consensus 423 ~~~v~Q~~~~~~~-ti~eni~~~~~----------------~~------~~~~~~~~~~~~l~~~~~~~~~g~~t~v~~~ 479 (1156)
++|++|+|.++.. |++||+.++.. .. .++..+.++.+++.+ ..+.+
T Consensus 82 i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~-----------~~~~~ 150 (255)
T PRK11300 82 VVRTFQHVRLFREMTVIENLLVAQHQQLKTGLFSGLLKTPAFRRAESEALDRAATWLERVGLLE-----------HANRQ 150 (255)
T ss_pred eEEeccCcccCCCCcHHHHHHHhhhccccchhhhhhccccccccchhHHHHHHHHHHHhCChhh-----------hhhCC
Confidence 5789999998875 99999997521 00 112333444444432 33456
Q ss_pred CCCCCHHHHHHHHHHHhhccCCCeeeeeCCCCCcCHHHHHHHHHHHHh--c-CCCEEEEEccCCCccc-cCCEEEEEeCC
Q 037346 480 GINLSGGQKQRIQIARPLYQDADIFLLDDPFSPVDDHTGAHLFKFCWV--S-SSKTVIYATHQVEFLP-AADLILVIKDG 555 (1156)
Q Consensus 480 g~~LSgGqkqRi~lAral~~~~~illlDep~s~lD~~~~~~i~~~~~~--~-~~~tvi~vtH~~~~~~-~~d~i~~l~~G 555 (1156)
+.+||||||||++||||++.+|+++||||||++||+.+++.+.+.+.. . .|+|+|++||+++.+. .||++++|++|
T Consensus 151 ~~~LS~G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~g 230 (255)
T PRK11300 151 AGNLAYGQQRRLEIARCMVTQPEILMLDEPAAGLNPKETKELDELIAELRNEHNVTVLLIEHDMKLVMGISDRIYVVNQG 230 (255)
T ss_pred hhhCCHHHHHHHHHHHHHhcCCCEEEEcCCccCCCHHHHHHHHHHHHHHHhhcCCEEEEEeCCHHHHHHhCCEEEEEECC
Confidence 679999999999999999999999999999999999999988876643 2 3789999999999985 59999999999
Q ss_pred eEEEccChHHHHh
Q 037346 556 KITQAGKYSDILN 568 (1156)
Q Consensus 556 ~i~~~g~~~~l~~ 568 (1156)
++++.|+.+++..
T Consensus 231 ~i~~~~~~~~~~~ 243 (255)
T PRK11300 231 TPLANGTPEEIRN 243 (255)
T ss_pred eEEecCCHHHHhh
Confidence 9999999888754
|
|
| >TIGR02673 FtsE cell division ATP-binding protein FtsE | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.4e-37 Score=331.71 Aligned_cols=186 Identities=24% Similarity=0.400 Sum_probs=159.3
Q ss_pred EEEeeeEEEeCCCCCCCccccceEEeeCCeEEEEEcCCCCChHHHHHHHhCCCCCCCcEEEEcCe---------------
Q 037346 358 IEIIDGSFSWDFSSPNPTLRNINLKVFHGMRVAVCGTVGSGKSSCLSCILGGVPKESGIIRLCGT--------------- 422 (1156)
Q Consensus 358 i~~~~~~f~~~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKSTll~~i~g~~~~~~G~i~~~g~--------------- 422 (1156)
++++|+++.|+. +.++|+|+||+|++|++++|+||||||||||+++|+|+++|++|+|.++|.
T Consensus 2 l~~~~l~~~~~~--~~~il~~is~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~ 79 (214)
T TIGR02673 2 IEFHNVSKAYPG--GVAALHDVSLHIRKGEFLFLTGPSGAGKTTLLKLLYGALTPSRGQVRIAGEDVNRLRGRQLPLLRR 79 (214)
T ss_pred EEEEeeeEEeCC--CceeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcccCCHHHHHHHHh
Confidence 689999999952 357999999999999999999999999999999999999999999998872
Q ss_pred -EEEEecCCcCCC-ccHHHHhhcCCC---CC----HHHHHHHHHHhCCchhhhhCCCCCccccccCCCCCCHHHHHHHHH
Q 037346 423 -KAYVAQSPWIQS-GKIEENILFGKE---MD----RERYERVLEACSLKKDLEVLPFGDQTIIGERGINLSGGQKQRIQI 493 (1156)
Q Consensus 423 -~~~v~Q~~~~~~-~ti~eni~~~~~---~~----~~~~~~~~~~~~l~~~~~~~~~g~~t~v~~~g~~LSgGqkqRi~l 493 (1156)
++|++|+|.++. .|++||+.++.. .+ +++.++.++..++.+.+.. ...+||||||||++|
T Consensus 80 ~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-----------~~~~LS~G~~qrl~l 148 (214)
T TIGR02673 80 RIGVVFQDFRLLPDRTVYENVALPLEVRGKKEREIQRRVGAALRQVGLEHKADA-----------FPEQLSGGEQQRVAI 148 (214)
T ss_pred heEEEecChhhccCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhhhC-----------ChhhCCHHHHHHHHH
Confidence 689999998875 699999987521 11 3455667777777654433 336899999999999
Q ss_pred HHhhccCCCeeeeeCCCCCcCHHHHHHHHHHHHh--cCCCEEEEEccCCCcccc-CCEEEEEeCCe
Q 037346 494 ARPLYQDADIFLLDDPFSPVDDHTGAHLFKFCWV--SSSKTVIYATHQVEFLPA-ADLILVIKDGK 556 (1156)
Q Consensus 494 Aral~~~~~illlDep~s~lD~~~~~~i~~~~~~--~~~~tvi~vtH~~~~~~~-~d~i~~l~~G~ 556 (1156)
||||+.+|+++||||||++||+.++..+.+.+.. .+++|+|++||+++.+.. ||++++|++|+
T Consensus 149 a~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~tH~~~~~~~~~d~i~~l~~G~ 214 (214)
T TIGR02673 149 ARAIVNSPPLLLADEPTGNLDPDLSERILDLLKRLNKRGTTVIVATHDLSLVDRVAHRVIILDDGR 214 (214)
T ss_pred HHHHhCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCEEEEecCCC
Confidence 9999999999999999999999999998876644 358999999999998874 99999999985
|
This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein. |
| >TIGR03522 GldA_ABC_ATP gliding motility-associated ABC transporter ATP-binding subunit GldA | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.9e-37 Score=345.53 Aligned_cols=197 Identities=24% Similarity=0.423 Sum_probs=170.9
Q ss_pred EEEeeeEEEeCCCCCCCccccceEEeeCCeEEEEEcCCCCChHHHHHHHhCCCCCCCcEEEEcC------------eEEE
Q 037346 358 IEIIDGSFSWDFSSPNPTLRNINLKVFHGMRVAVCGTVGSGKSSCLSCILGGVPKESGIIRLCG------------TKAY 425 (1156)
Q Consensus 358 i~~~~~~f~~~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKSTll~~i~g~~~~~~G~i~~~g------------~~~~ 425 (1156)
++++|++++|+ +..+|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++| .++|
T Consensus 3 l~~~~l~~~~~---~~~~l~~is~~i~~Gei~~l~G~NGaGKTTLl~~l~Gl~~~~~G~i~i~g~~~~~~~~~~~~~ig~ 79 (301)
T TIGR03522 3 IRVSSLTKLYG---TQNALDEVSFEAQKGRIVGFLGPNGAGKSTTMKIITGYLPPDSGSVQVCGEDVLQNPKEVQRNIGY 79 (301)
T ss_pred EEEEEEEEEEC---CEEEEEEeEEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEcccChHHHHhceEE
Confidence 78999999996 35699999999999999999999999999999999999999999999988 3799
Q ss_pred EecCCcCCCc-cHHHHhhcCCC---CC----HHHHHHHHHHhCCchhhhhCCCCCccccccCCCCCCHHHHHHHHHHHhh
Q 037346 426 VAQSPWIQSG-KIEENILFGKE---MD----RERYERVLEACSLKKDLEVLPFGDQTIIGERGINLSGGQKQRIQIARPL 497 (1156)
Q Consensus 426 v~Q~~~~~~~-ti~eni~~~~~---~~----~~~~~~~~~~~~l~~~~~~~~~g~~t~v~~~g~~LSgGqkqRi~lAral 497 (1156)
+||+|.++.. |++||+.+... .. .++.+++++.+++.+.. ..+..+||||||||++|||||
T Consensus 80 ~~q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~-----------~~~~~~LS~G~~qrv~la~al 148 (301)
T TIGR03522 80 LPEHNPLYLDMYVREYLQFIAGIYGMKGQLLKQRVEEMIELVGLRPEQ-----------HKKIGQLSKGYRQRVGLAQAL 148 (301)
T ss_pred ecCCCCCCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCchHh-----------cCchhhCCHHHHHHHHHHHHH
Confidence 9999998865 99999975321 12 24556677777775443 345578999999999999999
Q ss_pred ccCCCeeeeeCCCCCcCHHHHHHHHHHHHh-cCCCEEEEEccCCCcccc-CCEEEEEeCCeEEEccChHHHHh
Q 037346 498 YQDADIFLLDDPFSPVDDHTGAHLFKFCWV-SSSKTVIYATHQVEFLPA-ADLILVIKDGKITQAGKYSDILN 568 (1156)
Q Consensus 498 ~~~~~illlDep~s~lD~~~~~~i~~~~~~-~~~~tvi~vtH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~~ 568 (1156)
+++|+++||||||++||+.+++++++.+.. .+++|+|++||+++.+.. ||+|++|++|++++.|+.+++..
T Consensus 149 ~~~p~lliLDEPt~gLD~~~~~~l~~~l~~~~~~~tiii~sH~l~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 221 (301)
T TIGR03522 149 IHDPKVLILDEPTTGLDPNQLVEIRNVIKNIGKDKTIILSTHIMQEVEAICDRVIIINKGKIVADKKLDELSA 221 (301)
T ss_pred hcCCCEEEEcCCcccCCHHHHHHHHHHHHHhcCCCEEEEEcCCHHHHHHhCCEEEEEECCEEEEeCCHHHHHH
Confidence 999999999999999999999998886644 347999999999998864 99999999999999999998864
|
Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility. |
| >PRK14268 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.1e-37 Score=338.37 Aligned_cols=203 Identities=23% Similarity=0.352 Sum_probs=170.7
Q ss_pred ccEEEeeeEEEeCCCCCCCccccceEEeeCCeEEEEEcCCCCChHHHHHHHhCCCCC-----CCcEEEEcCe--------
Q 037346 356 TAIEIIDGSFSWDFSSPNPTLRNINLKVFHGMRVAVCGTVGSGKSSCLSCILGGVPK-----ESGIIRLCGT-------- 422 (1156)
Q Consensus 356 ~~i~~~~~~f~~~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKSTll~~i~g~~~~-----~~G~i~~~g~-------- 422 (1156)
..++++|+++.|+ ++++|+|+||+|++||+++|+|+||||||||+++|+|+++| ++|+|.++|.
T Consensus 11 ~~l~~~~l~~~~~---~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~ 87 (258)
T PRK14268 11 PQIKVENLNLWYG---EKQALKNVSMQIPKNSVTALIGPSGCGKSTFIRCLNRMNDLIKNCRIEGKVSIEGEDIYEPDVD 87 (258)
T ss_pred eeEEEeeeEEEeC---CeeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCcccCCCcceEEEECCEEcccccch
Confidence 4699999999996 35799999999999999999999999999999999999985 7999998762
Q ss_pred -------EEEEecCCcCCCccHHHHhhcCCC---CCH----HHHHHHHHHhCCchhhhhCCCCCccccccCCCCCCHHHH
Q 037346 423 -------KAYVAQSPWIQSGKIEENILFGKE---MDR----ERYERVLEACSLKKDLEVLPFGDQTIIGERGINLSGGQK 488 (1156)
Q Consensus 423 -------~~~v~Q~~~~~~~ti~eni~~~~~---~~~----~~~~~~~~~~~l~~~~~~~~~g~~t~v~~~g~~LSgGqk 488 (1156)
++|++|++.++..|++||+.++.. .+. ++.+++++.+++...+. ......+.+||||||
T Consensus 88 ~~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-------~~~~~~~~~LSgG~~ 160 (258)
T PRK14268 88 VVELRKNVGMVFQKPNPFPMSIYDNVAYGPRIHGANKKDLDGVVENALRSAALWDETS-------DRLKSPALSLSGGQQ 160 (258)
T ss_pred HHHHhhhEEEEecCCccCcccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCCcchh-------hhhcCChhhCCHHHH
Confidence 689999999888999999987531 222 23455666666643221 123456678999999
Q ss_pred HHHHHHHhhccCCCeeeeeCCCCCcCHHHHHHHHHHHHh-cCCCEEEEEccCCCccc-cCCEEEEEeCCeEEEccChHHH
Q 037346 489 QRIQIARPLYQDADIFLLDDPFSPVDDHTGAHLFKFCWV-SSSKTVIYATHQVEFLP-AADLILVIKDGKITQAGKYSDI 566 (1156)
Q Consensus 489 qRi~lAral~~~~~illlDep~s~lD~~~~~~i~~~~~~-~~~~tvi~vtH~~~~~~-~~d~i~~l~~G~i~~~g~~~~l 566 (1156)
||++|||||+.+|+++||||||++||+.++..+.+.+.. .+++|+|++||+++.+. .||+|++|++|++++.|+++++
T Consensus 161 qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~ 240 (258)
T PRK14268 161 QRLCIARTLAVKPKIILFDEPTSALDPISTARIEDLIMNLKKDYTIVIVTHNMQQAARISDYTGFFLMGELIEFGQTRQI 240 (258)
T ss_pred HHHHHHHHHHcCCCEEEEeCCCcccCHHHHHHHHHHHHHHhhCCEEEEEECCHHHHHHhCCEEEEEECCEEEEeCCHHHH
Confidence 999999999999999999999999999999988776644 34789999999999875 5999999999999999999888
Q ss_pred Hh
Q 037346 567 LN 568 (1156)
Q Consensus 567 ~~ 568 (1156)
.+
T Consensus 241 ~~ 242 (258)
T PRK14268 241 FH 242 (258)
T ss_pred hc
Confidence 64
|
|
| >PRK13638 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-36 Score=340.39 Aligned_cols=197 Identities=24% Similarity=0.359 Sum_probs=167.6
Q ss_pred EEEeeeEEEeCCCCCCCccccceEEeeCCeEEEEEcCCCCChHHHHHHHhCCCCCCCcEEEEcCe---------------
Q 037346 358 IEIIDGSFSWDFSSPNPTLRNINLKVFHGMRVAVCGTVGSGKSSCLSCILGGVPKESGIIRLCGT--------------- 422 (1156)
Q Consensus 358 i~~~~~~f~~~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKSTll~~i~g~~~~~~G~i~~~g~--------------- 422 (1156)
++++|++++|+ ++++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.
T Consensus 2 l~~~~l~~~~~---~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~ 78 (271)
T PRK13638 2 LATSDLWFRYQ---DEPVLKGLNLDFSLSPVTGLVGANGCGKSTLFMNLSGLLRPQKGAVLWQGKPLDYSKRGLLALRQQ 78 (271)
T ss_pred eEEEEEEEEcC---CcccccceEEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCccEEEECCEEcccccCCHHHHHhh
Confidence 78999999996 357999999999999999999999999999999999999999999999772
Q ss_pred EEEEecCCc--CCCccHHHHhhcCC---CCCH----HHHHHHHHHhCCchhhhhCCCCCccccccCCCCCCHHHHHHHHH
Q 037346 423 KAYVAQSPW--IQSGKIEENILFGK---EMDR----ERYERVLEACSLKKDLEVLPFGDQTIIGERGINLSGGQKQRIQI 493 (1156)
Q Consensus 423 ~~~v~Q~~~--~~~~ti~eni~~~~---~~~~----~~~~~~~~~~~l~~~~~~~~~g~~t~v~~~g~~LSgGqkqRi~l 493 (1156)
++|++|+|. ++..|+.+|+.++. ..+. ++..++++.+++.+.. .....+||||||||++|
T Consensus 79 i~~v~q~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-----------~~~~~~LSgG~~qrl~l 147 (271)
T PRK13638 79 VATVFQDPEQQIFYTDIDSDIAFSLRNLGVPEAEITRRVDEALTLVDAQHFR-----------HQPIQCLSHGQKKRVAI 147 (271)
T ss_pred eEEEeeChhhccccccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHhHh-----------cCCchhCCHHHHHHHHH
Confidence 689999985 46678999998742 1222 2345566666765433 23457899999999999
Q ss_pred HHhhccCCCeeeeeCCCCCcCHHHHHHHHHHHHh--cCCCEEEEEccCCCccc-cCCEEEEEeCCeEEEccChHHHHh
Q 037346 494 ARPLYQDADIFLLDDPFSPVDDHTGAHLFKFCWV--SSSKTVIYATHQVEFLP-AADLILVIKDGKITQAGKYSDILN 568 (1156)
Q Consensus 494 Aral~~~~~illlDep~s~lD~~~~~~i~~~~~~--~~~~tvi~vtH~~~~~~-~~d~i~~l~~G~i~~~g~~~~l~~ 568 (1156)
||||+.+|+++||||||++||+.++..+.+.+.. .+|+|+|++||+++.+. .||++++|++|++++.|+++++..
T Consensus 148 araL~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vtH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 225 (271)
T PRK13638 148 AGALVLQARYLLLDEPTAGLDPAGRTQMIAIIRRIVAQGNHVIISSHDIDLIYEISDAVYVLRQGQILTHGAPGEVFA 225 (271)
T ss_pred HHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHhc
Confidence 9999999999999999999999999988876644 35889999999999985 599999999999999999988764
|
|
| >PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-36 Score=331.41 Aligned_cols=193 Identities=26% Similarity=0.370 Sum_probs=163.7
Q ss_pred cEEEeeeEEEeCCCCC-CCccccceEEeeCCeEEEEEcCCCCChHHHHHHHhCCCCCCCcEEEEcC--------------
Q 037346 357 AIEIIDGSFSWDFSSP-NPTLRNINLKVFHGMRVAVCGTVGSGKSSCLSCILGGVPKESGIIRLCG-------------- 421 (1156)
Q Consensus 357 ~i~~~~~~f~~~~~~~-~~~l~~i~l~i~~g~~~~ivG~~GsGKSTll~~i~g~~~~~~G~i~~~g-------------- 421 (1156)
.++++|++++|+.... .++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|
T Consensus 6 ~l~~~~l~~~~~~~~~~~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~ 85 (228)
T PRK10584 6 IVEVHHLKKSVGQGEHELSILTGVELVVKRGETIALIGESGSGKSTLLAILAGLDDGSSGEVSLVGQPLHQMDEEARAKL 85 (228)
T ss_pred eEEEeeeEEEccCCCcceEEEeccEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCeeEEECCEEcccCCHHHHHHH
Confidence 5899999999964211 3599999999999999999999999999999999999999999999876
Q ss_pred ---eEEEEecCCcCCC-ccHHHHhhcCC---CC----CHHHHHHHHHHhCCchhhhhCCCCCccccccCCCCCCHHHHHH
Q 037346 422 ---TKAYVAQSPWIQS-GKIEENILFGK---EM----DRERYERVLEACSLKKDLEVLPFGDQTIIGERGINLSGGQKQR 490 (1156)
Q Consensus 422 ---~~~~v~Q~~~~~~-~ti~eni~~~~---~~----~~~~~~~~~~~~~l~~~~~~~~~g~~t~v~~~g~~LSgGqkqR 490 (1156)
.++|++|+|.++. .|++||+.++. .. ..++..++++.+++.+.++. ...+||||||||
T Consensus 86 ~~~~i~~~~q~~~l~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-----------~~~~LS~Ge~qr 154 (228)
T PRK10584 86 RAKHVGFVFQSFMLIPTLNALENVELPALLRGESSRQSRNGAKALLEQLGLGKRLDH-----------LPAQLSGGEQQR 154 (228)
T ss_pred HhheEEEEEcccccCCCcCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHhHhhC-----------ChhhCCHHHHHH
Confidence 2789999998876 49999998642 11 13455667777777654443 346899999999
Q ss_pred HHHHHhhccCCCeeeeeCCCCCcCHHHHHHHHHHHHh---cCCCEEEEEccCCCccccCCEEEEEeCCeEEEc
Q 037346 491 IQIARPLYQDADIFLLDDPFSPVDDHTGAHLFKFCWV---SSSKTVIYATHQVEFLPAADLILVIKDGKITQA 560 (1156)
Q Consensus 491 i~lAral~~~~~illlDep~s~lD~~~~~~i~~~~~~---~~~~tvi~vtH~~~~~~~~d~i~~l~~G~i~~~ 560 (1156)
++|||||+.+|+++||||||++||+.+.+.+.+.+.. ..|+|+|++||+++.+..||++++|++|++++.
T Consensus 155 l~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~d~i~~l~~g~i~~~ 227 (228)
T PRK10584 155 VALARAFNGRPDVLFADEPTGNLDRQTGDKIADLLFSLNREHGTTLILVTHDLQLAARCDRRLRLVNGQLQEE 227 (228)
T ss_pred HHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHhCCEEEEEECCEEEec
Confidence 9999999999999999999999999999988876643 237899999999998877999999999999753
|
|
| >PRK14239 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-36 Score=337.08 Aligned_cols=203 Identities=25% Similarity=0.349 Sum_probs=169.4
Q ss_pred cEEEeeeEEEeCCCCCCCccccceEEeeCCeEEEEEcCCCCChHHHHHHHhCCCC--C---CCcEEEEcC----------
Q 037346 357 AIEIIDGSFSWDFSSPNPTLRNINLKVFHGMRVAVCGTVGSGKSSCLSCILGGVP--K---ESGIIRLCG---------- 421 (1156)
Q Consensus 357 ~i~~~~~~f~~~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKSTll~~i~g~~~--~---~~G~i~~~g---------- 421 (1156)
.++++|++++|+ ++++|+|+||+|++||+++|+||||||||||+++|+|+.+ | ++|+|.++|
T Consensus 5 ~l~~~~l~~~~~---~~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~~~~G~i~~~g~~~~~~~~~~ 81 (252)
T PRK14239 5 ILQVSDLSVYYN---KKKALNSVSLDFYPNEITALIGPSGSGKSTLLRSINRMNDLNPEVTITGSIVYNGHNIYSPRTDT 81 (252)
T ss_pred eEEEEeeEEEEC---CeeeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcccccCCCCCccceEEECCEECcCcccch
Confidence 589999999996 3479999999999999999999999999999999999853 6 489999886
Q ss_pred -----eEEEEecCCcCCCccHHHHhhcCCC---C-C----HHHHHHHHHHhCCchhhhhCCCCCccccccCCCCCCHHHH
Q 037346 422 -----TKAYVAQSPWIQSGKIEENILFGKE---M-D----RERYERVLEACSLKKDLEVLPFGDQTIIGERGINLSGGQK 488 (1156)
Q Consensus 422 -----~~~~v~Q~~~~~~~ti~eni~~~~~---~-~----~~~~~~~~~~~~l~~~~~~~~~g~~t~v~~~g~~LSgGqk 488 (1156)
.++|++|++.+++.|++||+.++.. . . +++..++++.+++...+. +..++.+.+||||||
T Consensus 82 ~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-------~~~~~~~~~LS~G~~ 154 (252)
T PRK14239 82 VDLRKEIGMVFQQPNPFPMSIYENVVYGLRLKGIKDKQVLDEAVEKSLKGASIWDEVK-------DRLHDSALGLSGGQQ 154 (252)
T ss_pred HhhhhcEEEEecCCccCcCcHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHcCCchhHH-------HHHhcCcccCCHHHH
Confidence 2789999999988999999986521 1 1 123344566666543221 223566789999999
Q ss_pred HHHHHHHhhccCCCeeeeeCCCCCcCHHHHHHHHHHHHh-cCCCEEEEEccCCCccc-cCCEEEEEeCCeEEEccChHHH
Q 037346 489 QRIQIARPLYQDADIFLLDDPFSPVDDHTGAHLFKFCWV-SSSKTVIYATHQVEFLP-AADLILVIKDGKITQAGKYSDI 566 (1156)
Q Consensus 489 qRi~lAral~~~~~illlDep~s~lD~~~~~~i~~~~~~-~~~~tvi~vtH~~~~~~-~~d~i~~l~~G~i~~~g~~~~l 566 (1156)
||++||||++.+|+++||||||++||+.+++.+.+.+.. .+++|+|++||+++.+. .||+|++|++|++++.|+++++
T Consensus 155 qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~ 234 (252)
T PRK14239 155 QRVCIARVLATSPKIILLDEPTSALDPISAGKIEETLLGLKDDYTMLLVTRSMQQASRISDRTGFFLDGDLIEYNDTKQM 234 (252)
T ss_pred HHHHHHHHHhcCCCEEEEcCCccccCHHHHHHHHHHHHHHhhCCeEEEEECCHHHHHHhCCEEEEEECCEEEEeCCHHHH
Confidence 999999999999999999999999999999998876644 34689999999999875 5999999999999999999888
Q ss_pred Hhc
Q 037346 567 LNS 569 (1156)
Q Consensus 567 ~~~ 569 (1156)
.+.
T Consensus 235 ~~~ 237 (252)
T PRK14239 235 FMN 237 (252)
T ss_pred HhC
Confidence 653
|
|
| >PRK10895 lipopolysaccharide ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-36 Score=334.40 Aligned_cols=198 Identities=22% Similarity=0.391 Sum_probs=167.6
Q ss_pred cEEEeeeEEEeCCCCCCCccccceEEeeCCeEEEEEcCCCCChHHHHHHHhCCCCCCCcEEEEcC--------------e
Q 037346 357 AIEIIDGSFSWDFSSPNPTLRNINLKVFHGMRVAVCGTVGSGKSSCLSCILGGVPKESGIIRLCG--------------T 422 (1156)
Q Consensus 357 ~i~~~~~~f~~~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKSTll~~i~g~~~~~~G~i~~~g--------------~ 422 (1156)
.++++|+++.|+ ++++|+|+||++++|++++|+||||||||||+++|+|+++|++|+|.++| .
T Consensus 3 ~l~~~~l~~~~~---~~~~l~~~sl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 79 (241)
T PRK10895 3 TLTAKNLAKAYK---GRRVVEDVSLTVNSGEIVGLLGPNGAGKTTTFYMVVGIVPRDAGNIIIDDEDISLLPLHARARRG 79 (241)
T ss_pred eEEEeCcEEEeC---CEEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHHHHhC
Confidence 488999999996 35799999999999999999999999999999999999999999999987 2
Q ss_pred EEEEecCCcCCC-ccHHHHhhcCCC----CC----HHHHHHHHHHhCCchhhhhCCCCCccccccCCCCCCHHHHHHHHH
Q 037346 423 KAYVAQSPWIQS-GKIEENILFGKE----MD----RERYERVLEACSLKKDLEVLPFGDQTIIGERGINLSGGQKQRIQI 493 (1156)
Q Consensus 423 ~~~v~Q~~~~~~-~ti~eni~~~~~----~~----~~~~~~~~~~~~l~~~~~~~~~g~~t~v~~~g~~LSgGqkqRi~l 493 (1156)
++|++|++.++. .|++||+.+... .+ ..+..+.++..++.. .......+||||||||++|
T Consensus 80 i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-----------~~~~~~~~LS~G~~qrv~l 148 (241)
T PRK10895 80 IGYLPQEASIFRRLSVYDNLMAVLQIRDDLSAEQREDRANELMEEFHIEH-----------LRDSMGQSLSGGERRRVEI 148 (241)
T ss_pred eEEeccCCcccccCcHHHHHhhhhhcccccCHHHHHHHHHHHHHHcCCHH-----------HhhcchhhCCHHHHHHHHH
Confidence 789999998876 599999987532 11 123445555555532 2345567899999999999
Q ss_pred HHhhccCCCeeeeeCCCCCcCHHHHHHHHHHHHh--cCCCEEEEEccCCCccc-cCCEEEEEeCCeEEEccChHHHHh
Q 037346 494 ARPLYQDADIFLLDDPFSPVDDHTGAHLFKFCWV--SSSKTVIYATHQVEFLP-AADLILVIKDGKITQAGKYSDILN 568 (1156)
Q Consensus 494 Aral~~~~~illlDep~s~lD~~~~~~i~~~~~~--~~~~tvi~vtH~~~~~~-~~d~i~~l~~G~i~~~g~~~~l~~ 568 (1156)
|||++.+|+++||||||++||+.+++.+.+.+.. .+|+|+|++||+++.+. .||++++|++|++++.|+++++.+
T Consensus 149 aral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tiii~sH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~~~ 226 (241)
T PRK10895 149 ARALAANPKFILLDEPFAGVDPISVIDIKRIIEHLRDSGLGVLITDHNVRETLAVCERAYIVSQGHLIAHGTPTEILQ 226 (241)
T ss_pred HHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEEcCHHHHHHhcCEEEEEeCCeEEeeCCHHHHhc
Confidence 9999999999999999999999999888765533 35899999999998775 599999999999999999988764
|
|
| >cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.7e-37 Score=330.95 Aligned_cols=187 Identities=28% Similarity=0.410 Sum_probs=159.3
Q ss_pred EEEeeeEEEeCCCCCCCccccceEEeeCCeEEEEEcCCCCChHHHHHHHhCCCCCCCcEEEEcCe---------------
Q 037346 358 IEIIDGSFSWDFSSPNPTLRNINLKVFHGMRVAVCGTVGSGKSSCLSCILGGVPKESGIIRLCGT--------------- 422 (1156)
Q Consensus 358 i~~~~~~f~~~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKSTll~~i~g~~~~~~G~i~~~g~--------------- 422 (1156)
++++|+++.|+. .+++|+|+||++++|++++|+||||||||||+++|+|+++|++|+|.++|.
T Consensus 1 l~~~~l~~~~~~--~~~~l~~~sl~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~~~~ 78 (214)
T cd03292 1 IEFINVTKTYPN--GTAALDGINISISAGEFVFLVGPSGAGKSTLLKLIYKEELPTSGTIRVNGQDVSDLRGRAIPYLRR 78 (214)
T ss_pred CEEEEEEEEeCC--CceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcccCCHHHHHHHHH
Confidence 468999999963 247999999999999999999999999999999999999999999999873
Q ss_pred -EEEEecCCcCCC-ccHHHHhhcCCC---CC----HHHHHHHHHHhCCchhhhhCCCCCccccccCCCCCCHHHHHHHHH
Q 037346 423 -KAYVAQSPWIQS-GKIEENILFGKE---MD----RERYERVLEACSLKKDLEVLPFGDQTIIGERGINLSGGQKQRIQI 493 (1156)
Q Consensus 423 -~~~v~Q~~~~~~-~ti~eni~~~~~---~~----~~~~~~~~~~~~l~~~~~~~~~g~~t~v~~~g~~LSgGqkqRi~l 493 (1156)
++|++|+|.++. .|++||+.++.. .. +++..+.++.+++.+..+ ....+||||||||++|
T Consensus 79 ~i~~v~q~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-----------~~~~~LS~G~~qrv~l 147 (214)
T cd03292 79 KIGVVFQDFRLLPDRNVYENVAFALEVTGVPPREIRKRVPAALELVGLSHKHR-----------ALPAELSGGEQQRVAI 147 (214)
T ss_pred heEEEecCchhccCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHhh-----------CChhhcCHHHHHHHHH
Confidence 699999998877 599999987531 11 234566777777765443 3346899999999999
Q ss_pred HHhhccCCCeeeeeCCCCCcCHHHHHHHHHHHHh--cCCCEEEEEccCCCcccc-CCEEEEEeCCeE
Q 037346 494 ARPLYQDADIFLLDDPFSPVDDHTGAHLFKFCWV--SSSKTVIYATHQVEFLPA-ADLILVIKDGKI 557 (1156)
Q Consensus 494 Aral~~~~~illlDep~s~lD~~~~~~i~~~~~~--~~~~tvi~vtH~~~~~~~-~d~i~~l~~G~i 557 (1156)
|||++.+|+++||||||++||+.+++.+.+.+.. .+|+|+|++||+++.+.. ||++++|++|++
T Consensus 148 aral~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~tiiivtH~~~~~~~~~d~i~~l~~G~~ 214 (214)
T cd03292 148 ARAIVNSPTILIADEPTGNLDPDTTWEIMNLLKKINKAGTTVVVATHAKELVDTTRHRVIALERGKL 214 (214)
T ss_pred HHHHHcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEeCCcC
Confidence 9999999999999999999999999988876644 358999999999999874 999999999974
|
The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring. |
| >PRK13648 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-36 Score=337.51 Aligned_cols=202 Identities=25% Similarity=0.371 Sum_probs=170.7
Q ss_pred ccEEEeeeEEEeCCCCCCCccccceEEeeCCeEEEEEcCCCCChHHHHHHHhCCCCCCCcEEEEcCe-------------
Q 037346 356 TAIEIIDGSFSWDFSSPNPTLRNINLKVFHGMRVAVCGTVGSGKSSCLSCILGGVPKESGIIRLCGT------------- 422 (1156)
Q Consensus 356 ~~i~~~~~~f~~~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKSTll~~i~g~~~~~~G~i~~~g~------------- 422 (1156)
..++++|+++.|+.. .+++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.
T Consensus 6 ~~l~i~~l~~~~~~~-~~~~l~~isl~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~ 84 (269)
T PRK13648 6 SIIVFKNVSFQYQSD-ASFTLKDVSFNIPKGQWTSIVGHNGSGKSTIAKLMIGIEKVKSGEIFYNNQAITDDNFEKLRKH 84 (269)
T ss_pred ceEEEEEEEEEcCCC-CCcceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHHhh
Confidence 358999999999632 246999999999999999999999999999999999999999999999883
Q ss_pred EEEEecCCc--CCCccHHHHhhcCCC---CCH----HHHHHHHHHhCCchhhhhCCCCCccccccCCCCCCHHHHHHHHH
Q 037346 423 KAYVAQSPW--IQSGKIEENILFGKE---MDR----ERYERVLEACSLKKDLEVLPFGDQTIIGERGINLSGGQKQRIQI 493 (1156)
Q Consensus 423 ~~~v~Q~~~--~~~~ti~eni~~~~~---~~~----~~~~~~~~~~~l~~~~~~~~~g~~t~v~~~g~~LSgGqkqRi~l 493 (1156)
++|++|+|. ++..|+++|+.++.. ... ++.+++++.+++.+..+ ..+.+||||||||++|
T Consensus 85 i~~v~q~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-----------~~~~~LS~G~~qrl~l 153 (269)
T PRK13648 85 IGIVFQNPDNQFVGSIVKYDVAFGLENHAVPYDEMHRRVSEALKQVDMLERAD-----------YEPNALSGGQKQRVAI 153 (269)
T ss_pred eeEEEeChHHhcccccHHHHHHhhHHhcCCCHHHHHHHHHHHHHHcCCchhhh-----------CCcccCCHHHHHHHHH
Confidence 689999995 455689999988632 121 23455666666654332 3457899999999999
Q ss_pred HHhhccCCCeeeeeCCCCCcCHHHHHHHHHHHHh--c-CCCEEEEEccCCCccccCCEEEEEeCCeEEEccChHHHHhc
Q 037346 494 ARPLYQDADIFLLDDPFSPVDDHTGAHLFKFCWV--S-SSKTVIYATHQVEFLPAADLILVIKDGKITQAGKYSDILNS 569 (1156)
Q Consensus 494 Aral~~~~~illlDep~s~lD~~~~~~i~~~~~~--~-~~~tvi~vtH~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~ 569 (1156)
|||++.+|+++||||||++||+.+++.+.+.+.. . .|+|+|++||+++.+..||+|++|++|++++.|+++++...
T Consensus 154 aral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~~~tiiivtH~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~ 232 (269)
T PRK13648 154 AGVLALNPSVIILDEATSMLDPDARQNLLDLVRKVKSEHNITIISITHDLSEAMEADHVIVMNKGTVYKEGTPTEIFDH 232 (269)
T ss_pred HHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCchHHhcCCEEEEEECCEEEEecCHHHHhcC
Confidence 9999999999999999999999999988876643 2 37899999999998877999999999999999999887653
|
|
| >PRK11614 livF leucine/isoleucine/valine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-36 Score=333.14 Aligned_cols=198 Identities=24% Similarity=0.321 Sum_probs=165.7
Q ss_pred cEEEeeeEEEeCCCCCCCccccceEEeeCCeEEEEEcCCCCChHHHHHHHhCCCCCCCcEEEEcCe--------------
Q 037346 357 AIEIIDGSFSWDFSSPNPTLRNINLKVFHGMRVAVCGTVGSGKSSCLSCILGGVPKESGIIRLCGT-------------- 422 (1156)
Q Consensus 357 ~i~~~~~~f~~~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKSTll~~i~g~~~~~~G~i~~~g~-------------- 422 (1156)
.++++|+++.|+ ++++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.
T Consensus 5 ~l~~~~l~~~~~---~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~ 81 (237)
T PRK11614 5 MLSFDKVSAHYG---KIQALHEVSLHINQGEIVTLIGANGAGKTTLLGTLCGDPRATSGRIVFDGKDITDWQTAKIMREA 81 (237)
T ss_pred EEEEEeEEEeeC---CceeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCCceEEECCEecCCCCHHHHHHhC
Confidence 589999999996 357999999999999999999999999999999999999999999999872
Q ss_pred EEEEecCCcCCC-ccHHHHhhcCCCC-CH----HHHHHHHHHh-CCchhhhhCCCCCccccccCCCCCCHHHHHHHHHHH
Q 037346 423 KAYVAQSPWIQS-GKIEENILFGKEM-DR----ERYERVLEAC-SLKKDLEVLPFGDQTIIGERGINLSGGQKQRIQIAR 495 (1156)
Q Consensus 423 ~~~v~Q~~~~~~-~ti~eni~~~~~~-~~----~~~~~~~~~~-~l~~~~~~~~~g~~t~v~~~g~~LSgGqkqRi~lAr 495 (1156)
++|++|++.++. .|++||+.++... .. ++..++++.. ++.+. ......+||||||||++|||
T Consensus 82 i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~l~~~~~l~~~-----------~~~~~~~LS~G~~qrl~la~ 150 (237)
T PRK11614 82 VAIVPEGRRVFSRMTVEENLAMGGFFAERDQFQERIKWVYELFPRLHER-----------RIQRAGTMSGGEQQMLAIGR 150 (237)
T ss_pred EEEeccCcccCCCCcHHHHHHHhhhccChhHHHHHHHHHHHHHHHHHHH-----------HhCchhhCCHHHHHHHHHHH
Confidence 689999998887 4999999876421 11 1223333333 12211 12456789999999999999
Q ss_pred hhccCCCeeeeeCCCCCcCHHHHHHHHHHHHh--cCCCEEEEEccCCCccc-cCCEEEEEeCCeEEEccChHHHHh
Q 037346 496 PLYQDADIFLLDDPFSPVDDHTGAHLFKFCWV--SSSKTVIYATHQVEFLP-AADLILVIKDGKITQAGKYSDILN 568 (1156)
Q Consensus 496 al~~~~~illlDep~s~lD~~~~~~i~~~~~~--~~~~tvi~vtH~~~~~~-~~d~i~~l~~G~i~~~g~~~~l~~ 568 (1156)
|++.+|+++||||||++||+.+++.+.+.+.. .+|+|+|++||+++.+. .||++++|++|++++.|+++++..
T Consensus 151 al~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~ 226 (237)
T PRK11614 151 ALMSQPRLLLLDEPSLGLAPIIIQQIFDTIEQLREQGMTIFLVEQNANQALKLADRGYVLENGHVVLEDTGDALLA 226 (237)
T ss_pred HHHhCCCEEEEcCccccCCHHHHHHHHHHHHHHHHCCCEEEEEeCcHHHHHhhCCEEEEEeCCEEEeeCCHHHHhc
Confidence 99999999999999999999999988876643 45899999999998765 599999999999999999988864
|
|
| >PRK14249 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-36 Score=335.31 Aligned_cols=202 Identities=26% Similarity=0.371 Sum_probs=169.8
Q ss_pred cEEEeeeEEEeCCCCCCCccccceEEeeCCeEEEEEcCCCCChHHHHHHHhCCCCCC-----CcEEEEcC----------
Q 037346 357 AIEIIDGSFSWDFSSPNPTLRNINLKVFHGMRVAVCGTVGSGKSSCLSCILGGVPKE-----SGIIRLCG---------- 421 (1156)
Q Consensus 357 ~i~~~~~~f~~~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKSTll~~i~g~~~~~-----~G~i~~~g---------- 421 (1156)
.++++|++|.|+ ++++|+|+||+|++|++++|+||||||||||+++|+|+++|+ +|+|.++|
T Consensus 4 ~l~~~~l~~~~~---~~~il~~~s~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~~~~~~~~~ 80 (251)
T PRK14249 4 KIKIRGVNFFYH---KHQVLKNINMDFPERQITAIIGPSGCGKSTLLRALNRMNDIVSGARLEGAVLLDNENIYSPNLDV 80 (251)
T ss_pred eEEEEEEEEEEC---CeeEecceEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCccccCCcccEEEECCEEccccccCh
Confidence 589999999996 356999999999999999999999999999999999999987 59998876
Q ss_pred -----eEEEEecCCcCCCccHHHHhhcCCCC----C----HHHHHHHHHHhCCchhhhhCCCCCccccccCCCCCCHHHH
Q 037346 422 -----TKAYVAQSPWIQSGKIEENILFGKEM----D----RERYERVLEACSLKKDLEVLPFGDQTIIGERGINLSGGQK 488 (1156)
Q Consensus 422 -----~~~~v~Q~~~~~~~ti~eni~~~~~~----~----~~~~~~~~~~~~l~~~~~~~~~g~~t~v~~~g~~LSgGqk 488 (1156)
.++|++|+|.+++.|++||+.++... . +++.+++++..++.+.+. ...++.+.+||||||
T Consensus 81 ~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~-------~~~~~~~~~LS~Gq~ 153 (251)
T PRK14249 81 VNLRKRVGMVFQQPNPFPKSIFDNVAFGPRMLGTTAQSRLDEVVEKSLRQAALWDEVK-------DNLHKSGLALSGGQQ 153 (251)
T ss_pred HHhhceEEEEecCCccCcCcHHHHHhhHHHhcCCChhhHHHHHHHHHHHHhCCchhhh-------hHhhCCcccCCHHHH
Confidence 27899999999888999999886321 1 123344455555543222 234567789999999
Q ss_pred HHHHHHHhhccCCCeeeeeCCCCCcCHHHHHHHHHHHHh-cCCCEEEEEccCCCcccc-CCEEEEEeCCeEEEccChHHH
Q 037346 489 QRIQIARPLYQDADIFLLDDPFSPVDDHTGAHLFKFCWV-SSSKTVIYATHQVEFLPA-ADLILVIKDGKITQAGKYSDI 566 (1156)
Q Consensus 489 qRi~lAral~~~~~illlDep~s~lD~~~~~~i~~~~~~-~~~~tvi~vtH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l 566 (1156)
||++||||++.+|+++||||||++||+.++.++.+.+.. .+++|+|++||+++.+.. ||++++|++|++++.|+.+++
T Consensus 154 qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tilivsh~~~~~~~~~d~i~~l~~G~i~~~~~~~~~ 233 (251)
T PRK14249 154 QRLCIARVLAIEPEVILMDEPCSALDPVSTMRIEELMQELKQNYTIAIVTHNMQQAARASDWTGFLLTGDLVEYGRTGEI 233 (251)
T ss_pred HHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhhCCEEEEEeCCeEEEeCCHHHH
Confidence 999999999999999999999999999999988776543 357899999999999865 899999999999999999887
Q ss_pred Hh
Q 037346 567 LN 568 (1156)
Q Consensus 567 ~~ 568 (1156)
..
T Consensus 234 ~~ 235 (251)
T PRK14249 234 FS 235 (251)
T ss_pred Hh
Confidence 64
|
|
| >TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.4e-37 Score=333.27 Aligned_cols=196 Identities=28% Similarity=0.458 Sum_probs=165.1
Q ss_pred EEEeeeEEEeCCCCCCCccccceEEeeCCeEEEEEcCCCCChHHHHHHHhCCCCCCCcEEEEcC--------------eE
Q 037346 358 IEIIDGSFSWDFSSPNPTLRNINLKVFHGMRVAVCGTVGSGKSSCLSCILGGVPKESGIIRLCG--------------TK 423 (1156)
Q Consensus 358 i~~~~~~f~~~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKSTll~~i~g~~~~~~G~i~~~g--------------~~ 423 (1156)
++++|+++.|+ ++++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++| .+
T Consensus 1 l~~~~l~~~~~---~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~i 77 (230)
T TIGR03410 1 LEVSNLNVYYG---QSHILRGVSLEVPKGEVTCVLGRNGVGKTTLLKTLMGLLPVKSGSIRLDGEDITKLPPHERARAGI 77 (230)
T ss_pred CEEEeEEEEeC---CeEEecceeeEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEECCCCCHHHHHHhCe
Confidence 46899999996 34799999999999999999999999999999999999999999999987 26
Q ss_pred EEEecCCcCCCc-cHHHHhhcCCCC---C-HHHHHHHHHHhCCchhhhhCCCCCccccccCCCCCCHHHHHHHHHHHhhc
Q 037346 424 AYVAQSPWIQSG-KIEENILFGKEM---D-RERYERVLEACSLKKDLEVLPFGDQTIIGERGINLSGGQKQRIQIARPLY 498 (1156)
Q Consensus 424 ~~v~Q~~~~~~~-ti~eni~~~~~~---~-~~~~~~~~~~~~l~~~~~~~~~g~~t~v~~~g~~LSgGqkqRi~lAral~ 498 (1156)
+|++|++.++.. |++||+.++... . .+...++++.+++. .....+...+||||||||++||||++
T Consensus 78 ~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~l~~~~~l----------~~~~~~~~~~LS~G~~qrv~la~al~ 147 (230)
T TIGR03410 78 AYVPQGREIFPRLTVEENLLTGLAALPRRSRKIPDEIYELFPVL----------KEMLGRRGGDLSGGQQQQLAIARALV 147 (230)
T ss_pred EEeccCCcccCCCcHHHHHHHHHHhcCcchHHHHHHHHHHHHhH----------HHHhhCChhhCCHHHHHHHHHHHHHh
Confidence 899999988875 999999875321 1 22334455444311 11224556789999999999999999
Q ss_pred cCCCeeeeeCCCCCcCHHHHHHHHHHHHh--c-CCCEEEEEccCCCccc-cCCEEEEEeCCeEEEccChHHH
Q 037346 499 QDADIFLLDDPFSPVDDHTGAHLFKFCWV--S-SSKTVIYATHQVEFLP-AADLILVIKDGKITQAGKYSDI 566 (1156)
Q Consensus 499 ~~~~illlDep~s~lD~~~~~~i~~~~~~--~-~~~tvi~vtH~~~~~~-~~d~i~~l~~G~i~~~g~~~~l 566 (1156)
.+|+++||||||++||+.+++++.+.+.. . .++|+|++||+++.+. .||+|+++++|++++.|+++++
T Consensus 148 ~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~~d~v~~l~~g~i~~~~~~~~~ 219 (230)
T TIGR03410 148 TRPKLLLLDEPTEGIQPSIIKDIGRVIRRLRAEGGMAILLVEQYLDFARELADRYYVMERGRVVASGAGDEL 219 (230)
T ss_pred cCCCEEEecCCcccCCHHHHHHHHHHHHHHHHcCCcEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHc
Confidence 99999999999999999999998876644 2 3789999999999987 4999999999999999998876
|
Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity. |
| >PRK13652 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-36 Score=339.55 Aligned_cols=199 Identities=31% Similarity=0.457 Sum_probs=171.1
Q ss_pred cEEEeeeEEEeCCCCCCCccccceEEeeCCeEEEEEcCCCCChHHHHHHHhCCCCCCCcEEEEcCe-------------E
Q 037346 357 AIEIIDGSFSWDFSSPNPTLRNINLKVFHGMRVAVCGTVGSGKSSCLSCILGGVPKESGIIRLCGT-------------K 423 (1156)
Q Consensus 357 ~i~~~~~~f~~~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKSTll~~i~g~~~~~~G~i~~~g~-------------~ 423 (1156)
.++++|++++|+. ..++|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.++|. +
T Consensus 3 ~l~~~~l~~~~~~--~~~~l~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i 80 (277)
T PRK13652 3 LIETRDLCYSYSG--SKEALNNINFIAPRNSRIAVIGPNGAGKSTLFRHFNGILKPTSGSVLIRGEPITKENIREVRKFV 80 (277)
T ss_pred eEEEEEEEEEeCC--CCceeeEeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHHhhe
Confidence 4789999999962 346999999999999999999999999999999999999999999999873 6
Q ss_pred EEEecCCc--CCCccHHHHhhcCCC---CCH----HHHHHHHHHhCCchhhhhCCCCCccccccCCCCCCHHHHHHHHHH
Q 037346 424 AYVAQSPW--IQSGKIEENILFGKE---MDR----ERYERVLEACSLKKDLEVLPFGDQTIIGERGINLSGGQKQRIQIA 494 (1156)
Q Consensus 424 ~~v~Q~~~--~~~~ti~eni~~~~~---~~~----~~~~~~~~~~~l~~~~~~~~~g~~t~v~~~g~~LSgGqkqRi~lA 494 (1156)
+|++|+|. +++.|+.||+.++.. .+. +++++.++.+++.+.+. ..+..||||||||++||
T Consensus 81 ~~v~q~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-----------~~~~~LS~Gq~qrl~la 149 (277)
T PRK13652 81 GLVFQNPDDQIFSPTVEQDIAFGPINLGLDEETVAHRVSSALHMLGLEELRD-----------RVPHHLSGGEKKRVAIA 149 (277)
T ss_pred EEEecCcccccccccHHHHHHhHHHHcCCCHHHHHHHHHHHHHHCCChhHhc-----------CCcccCCHHHHHHHHHH
Confidence 99999983 667899999987532 332 34566777777765444 33468999999999999
Q ss_pred HhhccCCCeeeeeCCCCCcCHHHHHHHHHHHHh--c-CCCEEEEEccCCCccc-cCCEEEEEeCCeEEEccChHHHHh
Q 037346 495 RPLYQDADIFLLDDPFSPVDDHTGAHLFKFCWV--S-SSKTVIYATHQVEFLP-AADLILVIKDGKITQAGKYSDILN 568 (1156)
Q Consensus 495 ral~~~~~illlDep~s~lD~~~~~~i~~~~~~--~-~~~tvi~vtH~~~~~~-~~d~i~~l~~G~i~~~g~~~~l~~ 568 (1156)
|||+.+|+++||||||++||+.+++.+.+.+.. . .|.|+|++||+++.+. .||+|++|++|++++.|+++++.+
T Consensus 150 raL~~~p~llilDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvli~tH~~~~~~~~~drv~~l~~G~i~~~g~~~~~~~ 227 (277)
T PRK13652 150 GVIAMEPQVLVLDEPTAGLDPQGVKELIDFLNDLPETYGMTVIFSTHQLDLVPEMADYIYVMDKGRIVAYGTVEEIFL 227 (277)
T ss_pred HHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEECCeEEEECCHHHHhc
Confidence 999999999999999999999999988776643 2 3899999999999985 699999999999999999998865
|
|
| >PRK13639 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-36 Score=340.39 Aligned_cols=198 Identities=30% Similarity=0.467 Sum_probs=169.9
Q ss_pred EEEeeeEEEeCCCCCCCccccceEEeeCCeEEEEEcCCCCChHHHHHHHhCCCCCCCcEEEEcCe---------------
Q 037346 358 IEIIDGSFSWDFSSPNPTLRNINLKVFHGMRVAVCGTVGSGKSSCLSCILGGVPKESGIIRLCGT--------------- 422 (1156)
Q Consensus 358 i~~~~~~f~~~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKSTll~~i~g~~~~~~G~i~~~g~--------------- 422 (1156)
++++|++++|+. ..++++|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.
T Consensus 2 l~~~~l~~~~~~--~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~ 79 (275)
T PRK13639 2 LETRDLKYSYPD--GTEALKGINFKAEKGEMVALLGPNGAGKSTLFLHFNGILKPTSGEVLIKGEPIKYDKKSLLEVRKT 79 (275)
T ss_pred EEEEEEEEEeCC--CCeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCEECccccchHHHHHhh
Confidence 689999999962 346999999999999999999999999999999999999999999999872
Q ss_pred EEEEecCC--cCCCccHHHHhhcCCC---CC----HHHHHHHHHHhCCchhhhhCCCCCccccccCCCCCCHHHHHHHHH
Q 037346 423 KAYVAQSP--WIQSGKIEENILFGKE---MD----RERYERVLEACSLKKDLEVLPFGDQTIIGERGINLSGGQKQRIQI 493 (1156)
Q Consensus 423 ~~~v~Q~~--~~~~~ti~eni~~~~~---~~----~~~~~~~~~~~~l~~~~~~~~~g~~t~v~~~g~~LSgGqkqRi~l 493 (1156)
++|++|+| .++..|+.||+.++.. .. .++..++++.+++.+..+ ..+.+||||||||++|
T Consensus 80 i~~v~q~~~~~~~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~-----------~~~~~LS~Gq~qrv~l 148 (275)
T PRK13639 80 VGIVFQNPDDQLFAPTVEEDVAFGPLNLGLSKEEVEKRVKEALKAVGMEGFEN-----------KPPHHLSGGQKKRVAI 148 (275)
T ss_pred eEEEeeChhhhhccccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCchhhc-----------CChhhCCHHHHHHHHH
Confidence 58999997 4677899999987531 11 234556777777754332 3456899999999999
Q ss_pred HHhhccCCCeeeeeCCCCCcCHHHHHHHHHHHHh--cCCCEEEEEccCCCccc-cCCEEEEEeCCeEEEccChHHHHh
Q 037346 494 ARPLYQDADIFLLDDPFSPVDDHTGAHLFKFCWV--SSSKTVIYATHQVEFLP-AADLILVIKDGKITQAGKYSDILN 568 (1156)
Q Consensus 494 Aral~~~~~illlDep~s~lD~~~~~~i~~~~~~--~~~~tvi~vtH~~~~~~-~~d~i~~l~~G~i~~~g~~~~l~~ 568 (1156)
|||++.+|+++||||||++||+.++..+.+.+.. .+|+|+|++||+++.+. .||++++|++|++++.|+++++..
T Consensus 149 aral~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~~~~til~vtH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 226 (275)
T PRK13639 149 AGILAMKPEIIVLDEPTSGLDPMGASQIMKLLYDLNKEGITIIISTHDVDLVPVYADKVYVMSDGKIIKEGTPKEVFS 226 (275)
T ss_pred HHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEeCCHHHHhc
Confidence 9999999999999999999999999998876644 34899999999999886 599999999999999999998764
|
|
| >cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-36 Score=317.74 Aligned_cols=165 Identities=34% Similarity=0.555 Sum_probs=150.3
Q ss_pred EEEeeeEEEeCCCCCCCccccceEEeeCCeEEEEEcCCCCChHHHHHHHhCCCCCCCcEEEEcCe------------EEE
Q 037346 358 IEIIDGSFSWDFSSPNPTLRNINLKVFHGMRVAVCGTVGSGKSSCLSCILGGVPKESGIIRLCGT------------KAY 425 (1156)
Q Consensus 358 i~~~~~~f~~~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKSTll~~i~g~~~~~~G~i~~~g~------------~~~ 425 (1156)
++++|++++|+.. +.++++|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|. ++|
T Consensus 1 i~~~~~~~~~~~~-~~~~l~~i~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~i~~ 79 (178)
T cd03247 1 LSINNVSFSYPEQ-EQQVLKNLSLELKQGEKIALLGRSGSGKSTLLQLLTGDLKPQQGEITLDGVPVSDLEKALSSLISV 79 (178)
T ss_pred CEEEEEEEEeCCC-CccceEEEEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCEEEECCEEHHHHHHHHHhhEEE
Confidence 4689999999632 236999999999999999999999999999999999999999999999984 699
Q ss_pred EecCCcCCCccHHHHhhcCCCCCHHHHHHHHHHhCCchhhhhCCCCCccccccCCCCCCHHHHHHHHHHHhhccCCCeee
Q 037346 426 VAQSPWIQSGKIEENILFGKEMDRERYERVLEACSLKKDLEVLPFGDQTIIGERGINLSGGQKQRIQIARPLYQDADIFL 505 (1156)
Q Consensus 426 v~Q~~~~~~~ti~eni~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~t~v~~~g~~LSgGqkqRi~lAral~~~~~ill 505 (1156)
++|+|++++.|++||+ +.+||||||||++||||++.+|+++|
T Consensus 80 ~~q~~~~~~~tv~~~i--------------------------------------~~~LS~G~~qrv~laral~~~p~~ll 121 (178)
T cd03247 80 LNQRPYLFDTTLRNNL--------------------------------------GRRFSGGERQRLALARILLQDAPIVL 121 (178)
T ss_pred EccCCeeecccHHHhh--------------------------------------cccCCHHHHHHHHHHHHHhcCCCEEE
Confidence 9999999989999998 35799999999999999999999999
Q ss_pred eeCCCCCcCHHHHHHHHHHHHh-cCCCEEEEEccCCCccccCCEEEEEeCCeEEEcc
Q 037346 506 LDDPFSPVDDHTGAHLFKFCWV-SSSKTVIYATHQVEFLPAADLILVIKDGKITQAG 561 (1156)
Q Consensus 506 lDep~s~lD~~~~~~i~~~~~~-~~~~tvi~vtH~~~~~~~~d~i~~l~~G~i~~~g 561 (1156)
|||||++||+.+++.+++.+.. .+++|+|++||+++.++.||++++|++|++++.|
T Consensus 122 lDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~~d~~~~l~~g~i~~~~ 178 (178)
T cd03247 122 LDEPTVGLDPITERQLLSLIFEVLKDKTLIWITHHLTGIEHMDKILFLENGKIIMQG 178 (178)
T ss_pred EECCcccCCHHHHHHHHHHHHHHcCCCEEEEEecCHHHHHhCCEEEEEECCEEEecC
Confidence 9999999999999988877644 3578999999999998889999999999998754
|
The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism. |
| >cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-36 Score=313.27 Aligned_cols=162 Identities=25% Similarity=0.394 Sum_probs=146.9
Q ss_pred EEEeeeEEEeCCCCCCCccccceEEeeCCeEEEEEcCCCCChHHHHHHHhCCCCCCCcEEEEcC--eEEEEecCCcCCCc
Q 037346 358 IEIIDGSFSWDFSSPNPTLRNINLKVFHGMRVAVCGTVGSGKSSCLSCILGGVPKESGIIRLCG--TKAYVAQSPWIQSG 435 (1156)
Q Consensus 358 i~~~~~~f~~~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKSTll~~i~g~~~~~~G~i~~~g--~~~~v~Q~~~~~~~ 435 (1156)
++++|++++|+. ++++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++| .++|++|++.+++.
T Consensus 1 i~~~~~~~~~~~--~~~~l~~i~l~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~~~~~i~~~~q~~~~~~~ 78 (166)
T cd03223 1 IELENLSLATPD--GRVLLKDLSFEIKPGDRLLITGPSGTGKSSLFRALAGLWPWGSGRIGMPEGEDLLFLPQRPYLPLG 78 (166)
T ss_pred CEEEEEEEEcCC--CCeeeecCeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCCceEEEECCCCccccc
Confidence 468999999963 35799999999999999999999999999999999999999999999987 79999999998888
Q ss_pred cHHHHhhcCCCCCHHHHHHHHHHhCCchhhhhCCCCCccccccCCCCCCHHHHHHHHHHHhhccCCCeeeeeCCCCCcCH
Q 037346 436 KIEENILFGKEMDRERYERVLEACSLKKDLEVLPFGDQTIIGERGINLSGGQKQRIQIARPLYQDADIFLLDDPFSPVDD 515 (1156)
Q Consensus 436 ti~eni~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~t~v~~~g~~LSgGqkqRi~lAral~~~~~illlDep~s~lD~ 515 (1156)
|++||+.++ .+.+||||||||++||||++++|+++||||||++||+
T Consensus 79 tv~~nl~~~----------------------------------~~~~LS~G~~~rv~laral~~~p~~lllDEPt~~LD~ 124 (166)
T cd03223 79 TLREQLIYP----------------------------------WDDVLSGGEQQRLAFARLLLHKPKFVFLDEATSALDE 124 (166)
T ss_pred cHHHHhhcc----------------------------------CCCCCCHHHHHHHHHHHHHHcCCCEEEEECCccccCH
Confidence 999999764 1358999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhcCCCEEEEEccCCCccccCCEEEEEeCCe
Q 037346 516 HTGAHLFKFCWVSSSKTVIYATHQVEFLPAADLILVIKDGK 556 (1156)
Q Consensus 516 ~~~~~i~~~~~~~~~~tvi~vtH~~~~~~~~d~i~~l~~G~ 556 (1156)
.+++.+.+.+... ++|+|++||+++....||++++|++|.
T Consensus 125 ~~~~~l~~~l~~~-~~tiiivsh~~~~~~~~d~i~~l~~~~ 164 (166)
T cd03223 125 ESEDRLYQLLKEL-GITVISVGHRPSLWKFHDRVLDLDGEG 164 (166)
T ss_pred HHHHHHHHHHHHh-CCEEEEEeCChhHHhhCCEEEEEcCCC
Confidence 9999888766444 689999999998777899999998763
|
The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt |
| >PRK14240 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-36 Score=335.06 Aligned_cols=202 Identities=25% Similarity=0.369 Sum_probs=169.2
Q ss_pred cEEEeeeEEEeCCCCCCCccccceEEeeCCeEEEEEcCCCCChHHHHHHHhCCCCC-----CCcEEEEcC----------
Q 037346 357 AIEIIDGSFSWDFSSPNPTLRNINLKVFHGMRVAVCGTVGSGKSSCLSCILGGVPK-----ESGIIRLCG---------- 421 (1156)
Q Consensus 357 ~i~~~~~~f~~~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKSTll~~i~g~~~~-----~~G~i~~~g---------- 421 (1156)
.++++|+++.|+ ++++++|+||+|++||+++|+||||||||||+++|+|+++| ++|+|.++|
T Consensus 3 ~l~~~~l~~~~~---~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~~~ 79 (250)
T PRK14240 3 KISVKDLDLFYG---DFQALKKINLDIEENQVTALIGPSGCGKSTFLRTLNRMNDLIPSVKIEGEVLLDGQDIYKSDIDV 79 (250)
T ss_pred eEEEEEEEEEEC---CceeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEccccccch
Confidence 589999999996 34799999999999999999999999999999999998763 689999986
Q ss_pred -----eEEEEecCCcCCCccHHHHhhcCCC---C-C----HHHHHHHHHHhCCchhhhhCCCCCccccccCCCCCCHHHH
Q 037346 422 -----TKAYVAQSPWIQSGKIEENILFGKE---M-D----RERYERVLEACSLKKDLEVLPFGDQTIIGERGINLSGGQK 488 (1156)
Q Consensus 422 -----~~~~v~Q~~~~~~~ti~eni~~~~~---~-~----~~~~~~~~~~~~l~~~~~~~~~g~~t~v~~~g~~LSgGqk 488 (1156)
.++|++|+|.+++.|++||+.++.. . . +++..++++.+++.+.+. ...++.+.+||||||
T Consensus 80 ~~~~~~i~~~~q~~~~~~~t~~~ni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~-------~~~~~~~~~LS~G~~ 152 (250)
T PRK14240 80 NQLRKRVGMVFQQPNPFPMSIYDNVAYGPRTHGIKDKKKLDEIVEKSLKGAALWDEVK-------DRLKKSALGLSGGQQ 152 (250)
T ss_pred HHHhccEEEEecCCccCcccHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCchhhH-------HHHhcCCCCCCHHHH
Confidence 2689999999888999999987632 1 1 233445566666543332 123456789999999
Q ss_pred HHHHHHHhhccCCCeeeeeCCCCCcCHHHHHHHHHHHHh-cCCCEEEEEccCCCccc-cCCEEEEEeCCeEEEccChHHH
Q 037346 489 QRIQIARPLYQDADIFLLDDPFSPVDDHTGAHLFKFCWV-SSSKTVIYATHQVEFLP-AADLILVIKDGKITQAGKYSDI 566 (1156)
Q Consensus 489 qRi~lAral~~~~~illlDep~s~lD~~~~~~i~~~~~~-~~~~tvi~vtH~~~~~~-~~d~i~~l~~G~i~~~g~~~~l 566 (1156)
||++||||++.+|+++||||||++||+.++..+.+.+.. .+++|+|++||+++.+. .||++++|++|++++.|+++++
T Consensus 153 qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~ 232 (250)
T PRK14240 153 QRLCIARALAVEPEVLLMDEPTSALDPISTLKIEELIQELKKDYTIVIVTHNMQQASRISDKTAFFLNGEIVEFGDTVDL 232 (250)
T ss_pred HHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEEeCHHHHHhhCCEEEEEECCEEEEeCCHHHH
Confidence 999999999999999999999999999999988776544 34789999999999876 5999999999999999998887
Q ss_pred Hh
Q 037346 567 LN 568 (1156)
Q Consensus 567 ~~ 568 (1156)
..
T Consensus 233 ~~ 234 (250)
T PRK14240 233 FT 234 (250)
T ss_pred Hh
Confidence 64
|
|
| >PRK14251 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-36 Score=336.82 Aligned_cols=203 Identities=26% Similarity=0.362 Sum_probs=170.2
Q ss_pred cEEEeeeEEEeCCCCCCCccccceEEeeCCeEEEEEcCCCCChHHHHHHHhCCCC-----CCCcEEEEcCe---------
Q 037346 357 AIEIIDGSFSWDFSSPNPTLRNINLKVFHGMRVAVCGTVGSGKSSCLSCILGGVP-----KESGIIRLCGT--------- 422 (1156)
Q Consensus 357 ~i~~~~~~f~~~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKSTll~~i~g~~~-----~~~G~i~~~g~--------- 422 (1156)
.++++|++|+|+ ++++|+|+||+|++||+++|+|+||||||||+++|+|+++ |++|+|.++|.
T Consensus 4 ~l~~~~l~~~~~---~~~~l~~~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~~~~G~v~i~g~~~~~~~~~~ 80 (251)
T PRK14251 4 IISAKDVHLSYG---NYEALHGISLDFEEKELTALIGPSGCGKSTFLRCLNRMNDDIENIKITGEIKFEGQNIYGSKMDL 80 (251)
T ss_pred eEEEEeeEEEEC---CeeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhhccccccCCCcceEEEECCEEcccccchH
Confidence 589999999996 3579999999999999999999999999999999999997 47999998873
Q ss_pred ------EEEEecCCcCCCccHHHHhhcCCC---C-C----HHHHHHHHHHhCCchhhhhCCCCCccccccCCCCCCHHHH
Q 037346 423 ------KAYVAQSPWIQSGKIEENILFGKE---M-D----RERYERVLEACSLKKDLEVLPFGDQTIIGERGINLSGGQK 488 (1156)
Q Consensus 423 ------~~~v~Q~~~~~~~ti~eni~~~~~---~-~----~~~~~~~~~~~~l~~~~~~~~~g~~t~v~~~g~~LSgGqk 488 (1156)
++|++|++.++..|++||+.++.. . + +++..++++.+++.... ....+..+.+||||||
T Consensus 81 ~~~~~~i~~~~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-------~~~~~~~~~~LS~Gq~ 153 (251)
T PRK14251 81 VELRKEVGMVFQQPTPFPFSVYDNVAYGLKIAGVKDKELIDQRVEESLKQAAIWKET-------KDNLDRNAQAFSGGQQ 153 (251)
T ss_pred HHhhccEEEEecCCccCCCcHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCCcch-------HHHhccChhhCCHHHH
Confidence 689999999988999999987532 1 1 13445566666664211 1122456689999999
Q ss_pred HHHHHHHhhccCCCeeeeeCCCCCcCHHHHHHHHHHHHh-cCCCEEEEEccCCCccc-cCCEEEEEeCCeEEEccChHHH
Q 037346 489 QRIQIARPLYQDADIFLLDDPFSPVDDHTGAHLFKFCWV-SSSKTVIYATHQVEFLP-AADLILVIKDGKITQAGKYSDI 566 (1156)
Q Consensus 489 qRi~lAral~~~~~illlDep~s~lD~~~~~~i~~~~~~-~~~~tvi~vtH~~~~~~-~~d~i~~l~~G~i~~~g~~~~l 566 (1156)
||++||||++++|+++||||||++||+.+++.+.+.+.. .+++|+|++||+++.+. .||+|++|++|++++.|+++++
T Consensus 154 qr~~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiiiisH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~ 233 (251)
T PRK14251 154 QRICIARALAVRPKVVLLDEPTSALDPISSSEIEETLMELKHQYTFIMVTHNLQQAGRISDQTAFLMNGDLIEAGPTEEM 233 (251)
T ss_pred HHHHHHHHHhcCCCEEEecCCCccCCHHHHHHHHHHHHHHHcCCeEEEEECCHHHHHhhcCEEEEEECCEEEEeCCHHHH
Confidence 999999999999999999999999999999988776644 34689999999999876 4999999999999999999887
Q ss_pred Hhc
Q 037346 567 LNS 569 (1156)
Q Consensus 567 ~~~ 569 (1156)
...
T Consensus 234 ~~~ 236 (251)
T PRK14251 234 FIA 236 (251)
T ss_pred HhC
Confidence 643
|
|
| >PRK13548 hmuV hemin importer ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-36 Score=335.45 Aligned_cols=198 Identities=27% Similarity=0.398 Sum_probs=169.4
Q ss_pred cEEEeeeEEEeCCCCCCCccccceEEeeCCeEEEEEcCCCCChHHHHHHHhCCCCCCCcEEEEcCe-------------E
Q 037346 357 AIEIIDGSFSWDFSSPNPTLRNINLKVFHGMRVAVCGTVGSGKSSCLSCILGGVPKESGIIRLCGT-------------K 423 (1156)
Q Consensus 357 ~i~~~~~~f~~~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKSTll~~i~g~~~~~~G~i~~~g~-------------~ 423 (1156)
.++++|+++.|+ ++++|+|+||+|++|++++|+||||||||||+++|+|+++|++|+|.++|. +
T Consensus 2 ~l~~~~l~~~~~---~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~p~~G~i~~~g~~~~~~~~~~~~~~i 78 (258)
T PRK13548 2 MLEARNLSVRLG---GRTLLDDVSLTLRPGEVVAILGPNGAGKSTLLRALSGELSPDSGEVRLNGRPLADWSPAELARRR 78 (258)
T ss_pred eEEEEeEEEEeC---CeeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEEcccCCHHHhhhhe
Confidence 378999999996 357999999999999999999999999999999999999999999999883 6
Q ss_pred EEEecCCcC-CCccHHHHhhcCCC-C------CHHHHHHHHHHhCCchhhhhCCCCCccccccCCCCCCHHHHHHHHHHH
Q 037346 424 AYVAQSPWI-QSGKIEENILFGKE-M------DRERYERVLEACSLKKDLEVLPFGDQTIIGERGINLSGGQKQRIQIAR 495 (1156)
Q Consensus 424 ~~v~Q~~~~-~~~ti~eni~~~~~-~------~~~~~~~~~~~~~l~~~~~~~~~g~~t~v~~~g~~LSgGqkqRi~lAr 495 (1156)
+|++|++.+ +..|++||+.++.. . .+++.+++++.+++.+..+ ....+||||||||++|||
T Consensus 79 ~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-----------~~~~~LSgGe~qrv~la~ 147 (258)
T PRK13548 79 AVLPQHSSLSFPFTVEEVVAMGRAPHGLSRAEDDALVAAALAQVDLAHLAG-----------RDYPQLSGGEQQRVQLAR 147 (258)
T ss_pred EEEccCCcCCCCCCHHHHHHhhhcccCCCcHHHHHHHHHHHHHcCCHhHhc-----------CCcccCCHHHHHHHHHHH
Confidence 899999987 56799999987532 1 1234556677777754332 345789999999999999
Q ss_pred hhc------cCCCeeeeeCCCCCcCHHHHHHHHHHHHh---cCCCEEEEEccCCCccc-cCCEEEEEeCCeEEEccChHH
Q 037346 496 PLY------QDADIFLLDDPFSPVDDHTGAHLFKFCWV---SSSKTVIYATHQVEFLP-AADLILVIKDGKITQAGKYSD 565 (1156)
Q Consensus 496 al~------~~~~illlDep~s~lD~~~~~~i~~~~~~---~~~~tvi~vtH~~~~~~-~~d~i~~l~~G~i~~~g~~~~ 565 (1156)
||+ .+|+++||||||++||+.+++.+.+.+.. ..|+|+|++||+++.+. .||+|++|++|++++.|++++
T Consensus 148 al~~~~~~~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~ 227 (258)
T PRK13548 148 VLAQLWEPDGPPRWLLLDEPTSALDLAHQHHVLRLARQLAHERGLAVIVVLHDLNLAARYADRIVLLHQGRLVADGTPAE 227 (258)
T ss_pred HHhcccccCCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhcCEEEEEECCEEEeeCCHHH
Confidence 999 59999999999999999999988776543 35789999999999886 599999999999999999888
Q ss_pred HHh
Q 037346 566 ILN 568 (1156)
Q Consensus 566 l~~ 568 (1156)
+..
T Consensus 228 ~~~ 230 (258)
T PRK13548 228 VLT 230 (258)
T ss_pred HhC
Confidence 764
|
|
| >PRK14247 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-36 Score=335.06 Aligned_cols=202 Identities=27% Similarity=0.355 Sum_probs=169.5
Q ss_pred cEEEeeeEEEeCCCCCCCccccceEEeeCCeEEEEEcCCCCChHHHHHHHhCCCCC-----CCcEEEEcCe---------
Q 037346 357 AIEIIDGSFSWDFSSPNPTLRNINLKVFHGMRVAVCGTVGSGKSSCLSCILGGVPK-----ESGIIRLCGT--------- 422 (1156)
Q Consensus 357 ~i~~~~~~f~~~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKSTll~~i~g~~~~-----~~G~i~~~g~--------- 422 (1156)
.++++|++++|+ +.++|+|+||+|++||+++|+||||||||||+++|+|+++| ++|+|.++|.
T Consensus 3 ~l~~~~l~~~~~---~~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~ 79 (250)
T PRK14247 3 KIEIRDLKVSFG---QVEVLDGVNLEIPDNTITALMGPSGSGKSTLLRVFNRLIELYPEARVSGEVYLDGQDIFKMDVIE 79 (250)
T ss_pred eEEEEeeEEEEC---CeeeeecceeEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCCCCceEEEECCEECCcCCHHH
Confidence 488999999996 35799999999999999999999999999999999999974 6999999873
Q ss_pred ----EEEEecCCcCC-CccHHHHhhcCCCC-----C----HHHHHHHHHHhCCchhhhhCCCCCccccccCCCCCCHHHH
Q 037346 423 ----KAYVAQSPWIQ-SGKIEENILFGKEM-----D----RERYERVLEACSLKKDLEVLPFGDQTIIGERGINLSGGQK 488 (1156)
Q Consensus 423 ----~~~v~Q~~~~~-~~ti~eni~~~~~~-----~----~~~~~~~~~~~~l~~~~~~~~~g~~t~v~~~g~~LSgGqk 488 (1156)
++|++|+|.++ ..|++||+.++... . .++..++++.+++.+.+. ........+||||||
T Consensus 80 ~~~~i~~v~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-------~~~~~~~~~LSgG~~ 152 (250)
T PRK14247 80 LRRRVQMVFQIPNPIPNLSIFENVALGLKLNRLVKSKKELQERVRWALEKAQLWDEVK-------DRLDAPAGKLSGGQQ 152 (250)
T ss_pred HhccEEEEeccCccCCCCcHHHHHHHHHHhccccCCHHHHHHHHHHHHHHcCCCcchh-------hhhcCCcccCCHHHH
Confidence 68999999754 67999999875321 1 234456677777643221 122455678999999
Q ss_pred HHHHHHHhhccCCCeeeeeCCCCCcCHHHHHHHHHHHHh-cCCCEEEEEccCCCccc-cCCEEEEEeCCeEEEccChHHH
Q 037346 489 QRIQIARPLYQDADIFLLDDPFSPVDDHTGAHLFKFCWV-SSSKTVIYATHQVEFLP-AADLILVIKDGKITQAGKYSDI 566 (1156)
Q Consensus 489 qRi~lAral~~~~~illlDep~s~lD~~~~~~i~~~~~~-~~~~tvi~vtH~~~~~~-~~d~i~~l~~G~i~~~g~~~~l 566 (1156)
||++||||++.+|+++||||||++||+.+++++.+.+.. .+++|+|++||+++.+. .||+|++|++|++++.|+++++
T Consensus 153 qrv~laral~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~ 232 (250)
T PRK14247 153 QRLCIARALAFQPEVLLADEPTANLDPENTAKIESLFLELKKDMTIVLVTHFPQQAARISDYVAFLYKGQIVEWGPTREV 232 (250)
T ss_pred HHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEECCeEEEECCHHHH
Confidence 999999999999999999999999999999998877654 34789999999999875 5999999999999999999887
Q ss_pred Hh
Q 037346 567 LN 568 (1156)
Q Consensus 567 ~~ 568 (1156)
..
T Consensus 233 ~~ 234 (250)
T PRK14247 233 FT 234 (250)
T ss_pred Hc
Confidence 64
|
|
| >TIGR03005 ectoine_ehuA ectoine/hydroxyectoine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-36 Score=336.36 Aligned_cols=198 Identities=27% Similarity=0.373 Sum_probs=168.3
Q ss_pred EEEeeeEEEeCCCCCCCccccceEEeeCCeEEEEEcCCCCChHHHHHHHhCCCCCCCcEEEEcC----------------
Q 037346 358 IEIIDGSFSWDFSSPNPTLRNINLKVFHGMRVAVCGTVGSGKSSCLSCILGGVPKESGIIRLCG---------------- 421 (1156)
Q Consensus 358 i~~~~~~f~~~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKSTll~~i~g~~~~~~G~i~~~g---------------- 421 (1156)
|+++|+++.|+ +.++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|
T Consensus 1 i~~~~l~~~~~---~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~~~~ 77 (252)
T TIGR03005 1 VRFSDVTKRFG---ILTVLDGLNFSVAAGEKVALIGPSGSGKSTILRILMTLEPIDEGQIQVEGEQLYHMPGRNGPLVPA 77 (252)
T ss_pred CEEEEEEEEeC---CeeEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEcccccccccccccc
Confidence 47899999996 35799999999999999999999999999999999999999999999876
Q ss_pred ----------eEEEEecCCcCCC-ccHHHHhhcCC----CCC----HHHHHHHHHHhCCchhhhhCCCCCccccccCCCC
Q 037346 422 ----------TKAYVAQSPWIQS-GKIEENILFGK----EMD----RERYERVLEACSLKKDLEVLPFGDQTIIGERGIN 482 (1156)
Q Consensus 422 ----------~~~~v~Q~~~~~~-~ti~eni~~~~----~~~----~~~~~~~~~~~~l~~~~~~~~~g~~t~v~~~g~~ 482 (1156)
.++|++|++.++. .|+.||+.++. ... .+++.+.++.+++.+.+ .+.+.+
T Consensus 78 ~~~~~~~~~~~i~~v~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~-----------~~~~~~ 146 (252)
T TIGR03005 78 DEKHLRQMRNKIGMVFQSFNLFPHKTVLDNVTEAPVLVLGMARAEAEKRAMELLDMVGLADKA-----------DHMPAQ 146 (252)
T ss_pred chhHHHHHhhCeEEEecCcccCCCCcHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhHh-----------hcChhh
Confidence 2689999998775 79999998742 111 23455566666665443 344578
Q ss_pred CCHHHHHHHHHHHhhccCCCeeeeeCCCCCcCHHHHHHHHHHHHh--c-CCCEEEEEccCCCccc-cCCEEEEEeCCeEE
Q 037346 483 LSGGQKQRIQIARPLYQDADIFLLDDPFSPVDDHTGAHLFKFCWV--S-SSKTVIYATHQVEFLP-AADLILVIKDGKIT 558 (1156)
Q Consensus 483 LSgGqkqRi~lAral~~~~~illlDep~s~lD~~~~~~i~~~~~~--~-~~~tvi~vtH~~~~~~-~~d~i~~l~~G~i~ 558 (1156)
||||||||++||||++.+|+++||||||++||+.++..+.+.+.. . .|+|+|++||+++.+. .||++++|++|+++
T Consensus 147 LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~ 226 (252)
T TIGR03005 147 LSGGQQQRVAIARALAMRPKVMLFDEVTSALDPELVGEVLNVIRRLASEHDLTMLLVTHEMGFAREFADRVCFFDKGRIV 226 (252)
T ss_pred cCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHHHHHHhcCEEEEEECCEEE
Confidence 999999999999999999999999999999999999988876643 2 3889999999999885 59999999999999
Q ss_pred EccChHHHHhc
Q 037346 559 QAGKYSDILNS 569 (1156)
Q Consensus 559 ~~g~~~~l~~~ 569 (1156)
+.|+++++...
T Consensus 227 ~~g~~~~~~~~ 237 (252)
T TIGR03005 227 EQGKPDEIFRQ 237 (252)
T ss_pred EeCCHHHHhcC
Confidence 99999887643
|
Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins. |
| >TIGR02769 nickel_nikE nickel import ATP-binding protein NikE | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-36 Score=336.87 Aligned_cols=207 Identities=23% Similarity=0.336 Sum_probs=170.5
Q ss_pred cEEEeeeEEEeCCC------CCCCccccceEEeeCCeEEEEEcCCCCChHHHHHHHhCCCCCCCcEEEEcC---------
Q 037346 357 AIEIIDGSFSWDFS------SPNPTLRNINLKVFHGMRVAVCGTVGSGKSSCLSCILGGVPKESGIIRLCG--------- 421 (1156)
Q Consensus 357 ~i~~~~~~f~~~~~------~~~~~l~~i~l~i~~g~~~~ivG~~GsGKSTll~~i~g~~~~~~G~i~~~g--------- 421 (1156)
.++++|++|.|+.. .++++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|
T Consensus 2 ~l~~~~l~~~~~~~~~~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~ 81 (265)
T TIGR02769 2 LLEVRDVTHTYRTGGLFGAKQRAPVLTNVSLSIEEGETVGLLGRSGCGKSTLARLLLGLEKPAQGTVSFRGQDLYQLDRK 81 (265)
T ss_pred eEEEEeEEEEeccCccccccCceEEeeCceeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEccccCHH
Confidence 37899999999631 135799999999999999999999999999999999999999999999987
Q ss_pred -------eEEEEecCCc--CC-CccHHHHhhcCC----CCC----HHHHHHHHHHhCCchhhhhCCCCCccccccCCCCC
Q 037346 422 -------TKAYVAQSPW--IQ-SGKIEENILFGK----EMD----RERYERVLEACSLKKDLEVLPFGDQTIIGERGINL 483 (1156)
Q Consensus 422 -------~~~~v~Q~~~--~~-~~ti~eni~~~~----~~~----~~~~~~~~~~~~l~~~~~~~~~g~~t~v~~~g~~L 483 (1156)
.++|++|+|. ++ ..|++||+.++. ..+ .++..++++.+++... ..+..+.+|
T Consensus 82 ~~~~~~~~i~~v~q~~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~----------~~~~~~~~L 151 (265)
T TIGR02769 82 QRRAFRRDVQLVFQDSPSAVNPRMTVRQIIGEPLRHLTSLDESEQKARIAELLDMVGLRSE----------DADKLPRQL 151 (265)
T ss_pred HHHHHhhceEEEecChhhhcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCChh----------hhhCChhhC
Confidence 2799999983 33 469999996531 122 2345556666666421 123456789
Q ss_pred CHHHHHHHHHHHhhccCCCeeeeeCCCCCcCHHHHHHHHHHHHh---cCCCEEEEEccCCCccc-cCCEEEEEeCCeEEE
Q 037346 484 SGGQKQRIQIARPLYQDADIFLLDDPFSPVDDHTGAHLFKFCWV---SSSKTVIYATHQVEFLP-AADLILVIKDGKITQ 559 (1156)
Q Consensus 484 SgGqkqRi~lAral~~~~~illlDep~s~lD~~~~~~i~~~~~~---~~~~tvi~vtH~~~~~~-~~d~i~~l~~G~i~~ 559 (1156)
|||||||++||||++.+|+++||||||++||+.+++.+.+.+.. ..|+|+|++||+++.+. .||++++|++|++++
T Consensus 152 SgGe~qrv~laral~~~p~illLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiiivsH~~~~~~~~~d~i~~l~~G~i~~ 231 (265)
T TIGR02769 152 SGGQLQRINIARALAVKPKLIVLDEAVSNLDMVLQAVILELLRKLQQAFGTAYLFITHDLRLVQSFCQRVAVMDKGQIVE 231 (265)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHHHHHHHhcEEEEEeCCEEEE
Confidence 99999999999999999999999999999999999888776643 23899999999999986 599999999999999
Q ss_pred ccChHHHHhcCcch
Q 037346 560 AGKYSDILNSGTDF 573 (1156)
Q Consensus 560 ~g~~~~l~~~~~~~ 573 (1156)
.|+++++......+
T Consensus 232 ~g~~~~~~~~~~~~ 245 (265)
T TIGR02769 232 ECDVAQLLSFKHPA 245 (265)
T ss_pred ECCHHHHcCCCCHH
Confidence 99999987643333
|
This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. |
| >PRK10253 iron-enterobactin transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-36 Score=337.48 Aligned_cols=199 Identities=23% Similarity=0.294 Sum_probs=170.7
Q ss_pred ccEEEeeeEEEeCCCCCCCccccceEEeeCCeEEEEEcCCCCChHHHHHHHhCCCCCCCcEEEEcCe-------------
Q 037346 356 TAIEIIDGSFSWDFSSPNPTLRNINLKVFHGMRVAVCGTVGSGKSSCLSCILGGVPKESGIIRLCGT------------- 422 (1156)
Q Consensus 356 ~~i~~~~~~f~~~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKSTll~~i~g~~~~~~G~i~~~g~------------- 422 (1156)
..++++|++++|+ ++.+|+|+||++++|++++|+||||||||||+++|+|+++|++|+|.++|.
T Consensus 6 ~~l~i~~l~~~~~---~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~ 82 (265)
T PRK10253 6 ARLRGEQLTLGYG---KYTVAENLTVEIPDGHFTAIIGPNGCGKSTLLRTLSRLMTPAHGHVWLDGEHIQHYASKEVARR 82 (265)
T ss_pred cEEEEEEEEEEEC---CEEEeeecceEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCCcEEEECCEEhhhCCHHHHhhh
Confidence 4699999999996 357999999999999999999999999999999999999999999999873
Q ss_pred EEEEecCCcCCC-ccHHHHhhcCC-C-------C---CHHHHHHHHHHhCCchhhhhCCCCCccccccCCCCCCHHHHHH
Q 037346 423 KAYVAQSPWIQS-GKIEENILFGK-E-------M---DRERYERVLEACSLKKDLEVLPFGDQTIIGERGINLSGGQKQR 490 (1156)
Q Consensus 423 ~~~v~Q~~~~~~-~ti~eni~~~~-~-------~---~~~~~~~~~~~~~l~~~~~~~~~g~~t~v~~~g~~LSgGqkqR 490 (1156)
++|++|++.++. .|++||+.++. . . +.++.+++++.+++.+.. ...+.+||||||||
T Consensus 83 i~~v~q~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-----------~~~~~~LS~Gq~qr 151 (265)
T PRK10253 83 IGLLAQNATTPGDITVQELVARGRYPHQPLFTRWRKEDEEAVTKAMQATGITHLA-----------DQSVDTLSGGQRQR 151 (265)
T ss_pred eEEeeccCcCCCCCcHHHHHHhCcccccccccCCCHHHHHHHHHHHHHcCCHHHh-----------cCCcccCChHHHHH
Confidence 699999998764 69999998752 1 1 123455667777775433 34567899999999
Q ss_pred HHHHHhhccCCCeeeeeCCCCCcCHHHHHHHHHHHHh--c-CCCEEEEEccCCCccc-cCCEEEEEeCCeEEEccChHHH
Q 037346 491 IQIARPLYQDADIFLLDDPFSPVDDHTGAHLFKFCWV--S-SSKTVIYATHQVEFLP-AADLILVIKDGKITQAGKYSDI 566 (1156)
Q Consensus 491 i~lAral~~~~~illlDep~s~lD~~~~~~i~~~~~~--~-~~~tvi~vtH~~~~~~-~~d~i~~l~~G~i~~~g~~~~l 566 (1156)
++||||++.+|+++||||||++||+.+++.+.+.+.. . .|+|+|++||+++.+. .||+|++|++|++++.|+++++
T Consensus 152 v~laral~~~p~llllDEPt~gLD~~~~~~l~~~L~~l~~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~ 231 (265)
T PRK10253 152 AWIAMVLAQETAIMLLDEPTTWLDISHQIDLLELLSELNREKGYTLAAVLHDLNQACRYASHLIALREGKIVAQGAPKEI 231 (265)
T ss_pred HHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHH
Confidence 9999999999999999999999999999998876644 2 4789999999999875 5999999999999999999887
Q ss_pred Hh
Q 037346 567 LN 568 (1156)
Q Consensus 567 ~~ 568 (1156)
..
T Consensus 232 ~~ 233 (265)
T PRK10253 232 VT 233 (265)
T ss_pred hh
Confidence 64
|
|
| >PRK14270 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-36 Score=335.19 Aligned_cols=203 Identities=24% Similarity=0.349 Sum_probs=171.7
Q ss_pred cEEEeeeEEEeCCCCCCCccccceEEeeCCeEEEEEcCCCCChHHHHHHHhCCCCC-----CCcEEEEcCe---------
Q 037346 357 AIEIIDGSFSWDFSSPNPTLRNINLKVFHGMRVAVCGTVGSGKSSCLSCILGGVPK-----ESGIIRLCGT--------- 422 (1156)
Q Consensus 357 ~i~~~~~~f~~~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKSTll~~i~g~~~~-----~~G~i~~~g~--------- 422 (1156)
.++++|+++.|+ ++++|+|+||+|++||+++|+|+||||||||+++|+|+.+| ++|+|.++|.
T Consensus 4 ~l~~~~l~~~~~---~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~ 80 (251)
T PRK14270 4 KMESKNLNLWYG---EKQALNDINLPIYENKITALIGPSGCGKSTFLRCLNRMNDLISNVKIEGEVLLDGKNIYDKDVDV 80 (251)
T ss_pred EEEEEEeEEEEC---CeeeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHHhccCcccCCCCccEEEECCEecccccccH
Confidence 589999999996 35699999999999999999999999999999999999875 7899999862
Q ss_pred ------EEEEecCCcCCCccHHHHhhcCCCC----C----HHHHHHHHHHhCCchhhhhCCCCCccccccCCCCCCHHHH
Q 037346 423 ------KAYVAQSPWIQSGKIEENILFGKEM----D----RERYERVLEACSLKKDLEVLPFGDQTIIGERGINLSGGQK 488 (1156)
Q Consensus 423 ------~~~v~Q~~~~~~~ti~eni~~~~~~----~----~~~~~~~~~~~~l~~~~~~~~~g~~t~v~~~g~~LSgGqk 488 (1156)
++|++|++.++..|++||+.|+... . .+++.++++.+++.+.+.. ..+....+||||||
T Consensus 81 ~~~~~~i~~~~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-------~~~~~~~~LS~G~~ 153 (251)
T PRK14270 81 VELRKRVGMVFQKPNPFPMSIYDNVAYGPRIHGIKDKKELDKIVEWALKKAALWDEVKD-------DLKKSALKLSGGQQ 153 (251)
T ss_pred HHHHhheEEEecCCCcCCCcHHHHHHhHHHhcCCCcHHHHHHHHHHHHHHcCCchhhhh-------HhhCCcccCCHHHH
Confidence 6999999999889999999875321 1 2344567777776433321 23456779999999
Q ss_pred HHHHHHHhhccCCCeeeeeCCCCCcCHHHHHHHHHHHHh-cCCCEEEEEccCCCcccc-CCEEEEEeCCeEEEccChHHH
Q 037346 489 QRIQIARPLYQDADIFLLDDPFSPVDDHTGAHLFKFCWV-SSSKTVIYATHQVEFLPA-ADLILVIKDGKITQAGKYSDI 566 (1156)
Q Consensus 489 qRi~lAral~~~~~illlDep~s~lD~~~~~~i~~~~~~-~~~~tvi~vtH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l 566 (1156)
||++||||++.+|+++||||||++||+.++.++.+.+.. .+++|+|++||+++.+.. ||++++|++|++++.|+.+++
T Consensus 154 qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~L~~~~~~~tiiivsH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~ 233 (251)
T PRK14270 154 QRLCIARTIAVKPDVILMDEPTSALDPISTLKIEDLMVELKKEYTIVIVTHNMQQASRVSDYTAFFLMGDLIEFNKTEKI 233 (251)
T ss_pred HHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCeEEEEEcCHHHHHHhcCEEEEEECCeEEEeCCHHHH
Confidence 999999999999999999999999999999998776644 346899999999998764 999999999999999999887
Q ss_pred Hhc
Q 037346 567 LNS 569 (1156)
Q Consensus 567 ~~~ 569 (1156)
...
T Consensus 234 ~~~ 236 (251)
T PRK14270 234 FLE 236 (251)
T ss_pred hcC
Confidence 643
|
|
| >PRK10771 thiQ thiamine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-36 Score=328.44 Aligned_cols=196 Identities=30% Similarity=0.455 Sum_probs=168.1
Q ss_pred EEEeeeEEEeCCCCCCCccccceEEeeCCeEEEEEcCCCCChHHHHHHHhCCCCCCCcEEEEcCe-----------EEEE
Q 037346 358 IEIIDGSFSWDFSSPNPTLRNINLKVFHGMRVAVCGTVGSGKSSCLSCILGGVPKESGIIRLCGT-----------KAYV 426 (1156)
Q Consensus 358 i~~~~~~f~~~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKSTll~~i~g~~~~~~G~i~~~g~-----------~~~v 426 (1156)
++++|++++|+. .+ .|+||+|++|++++|+||||||||||+++|+|+++|++|+|.++|. ++|+
T Consensus 2 l~~~~l~~~~~~---~~--~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~i~~~ 76 (232)
T PRK10771 2 LKLTDITWLYHH---LP--MRFDLTVERGERVAILGPSGAGKSTLLNLIAGFLTPASGSLTLNGQDHTTTPPSRRPVSML 76 (232)
T ss_pred eEEEEEEEEECC---cc--ceeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCeecCcCChhhccEEEE
Confidence 689999999962 22 3999999999999999999999999999999999999999999873 6999
Q ss_pred ecCCcCCCc-cHHHHhhcCCC----C---CHHHHHHHHHHhCCchhhhhCCCCCccccccCCCCCCHHHHHHHHHHHhhc
Q 037346 427 AQSPWIQSG-KIEENILFGKE----M---DRERYERVLEACSLKKDLEVLPFGDQTIIGERGINLSGGQKQRIQIARPLY 498 (1156)
Q Consensus 427 ~Q~~~~~~~-ti~eni~~~~~----~---~~~~~~~~~~~~~l~~~~~~~~~g~~t~v~~~g~~LSgGqkqRi~lAral~ 498 (1156)
+|++.++.. |++||+.++.. . ++++..++++.+++.+.++.. ...||||||||++||||++
T Consensus 77 ~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-----------~~~LS~G~~qrv~laral~ 145 (232)
T PRK10771 77 FQENNLFSHLTVAQNIGLGLNPGLKLNAAQREKLHAIARQMGIEDLLARL-----------PGQLSGGQRQRVALARCLV 145 (232)
T ss_pred ecccccccCCcHHHHHhcccccccCCCHHHHHHHHHHHHHcCcHHHHhCC-----------cccCCHHHHHHHHHHHHHh
Confidence 999988874 99999987531 1 134566677778876555443 3589999999999999999
Q ss_pred cCCCeeeeeCCCCCcCHHHHHHHHHHHHh---cCCCEEEEEccCCCccc-cCCEEEEEeCCeEEEccChHHHHhc
Q 037346 499 QDADIFLLDDPFSPVDDHTGAHLFKFCWV---SSSKTVIYATHQVEFLP-AADLILVIKDGKITQAGKYSDILNS 569 (1156)
Q Consensus 499 ~~~~illlDep~s~lD~~~~~~i~~~~~~---~~~~tvi~vtH~~~~~~-~~d~i~~l~~G~i~~~g~~~~l~~~ 569 (1156)
++|+++||||||++||+.+++.+.+.+.. ..|+|+|++||+++.+. .||++++|++|++++.|+++++...
T Consensus 146 ~~p~lllLDEP~~gLD~~~~~~~~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~g~i~~~g~~~~~~~~ 220 (232)
T PRK10771 146 REQPILLLDEPFSALDPALRQEMLTLVSQVCQERQLTLLMVSHSLEDAARIAPRSLVVADGRIAWDGPTDELLSG 220 (232)
T ss_pred cCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEEEECCEEEEeCCHHHHHhC
Confidence 99999999999999999999988876643 24789999999999986 4999999999999999999888754
|
|
| >cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.9e-37 Score=329.01 Aligned_cols=186 Identities=36% Similarity=0.508 Sum_probs=156.8
Q ss_pred EEeeeEEEeCCCCCCCccccceEEeeCCeEEEEEcCCCCChHHHHHHHhCCCCCCCcEEEEcCe-------------EEE
Q 037346 359 EIIDGSFSWDFSSPNPTLRNINLKVFHGMRVAVCGTVGSGKSSCLSCILGGVPKESGIIRLCGT-------------KAY 425 (1156)
Q Consensus 359 ~~~~~~f~~~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKSTll~~i~g~~~~~~G~i~~~g~-------------~~~ 425 (1156)
+++|+++.|+.. ++++|+|+||++++|++++|+||||||||||+++|+|+++|++|+|.++|. ++|
T Consensus 1 ~~~~l~~~~~~~-~~~il~~vs~~i~~G~~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~ 79 (211)
T cd03225 1 ELKNLSFSYPDG-ARPALDDISLTIKKGEFVLIVGPNGSGKSTLLRLLNGLLGPTSGEVLVDGKDLTKLSLKELRRKVGL 79 (211)
T ss_pred CceeEEEecCCC-CeeeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEcccCCHHHHHhhceE
Confidence 368999999631 257999999999999999999999999999999999999999999999873 689
Q ss_pred EecCCc--CCCccHHHHhhcCCC---CC----HHHHHHHHHHhCCchhhhhCCCCCccccccCCCCCCHHHHHHHHHHHh
Q 037346 426 VAQSPW--IQSGKIEENILFGKE---MD----RERYERVLEACSLKKDLEVLPFGDQTIIGERGINLSGGQKQRIQIARP 496 (1156)
Q Consensus 426 v~Q~~~--~~~~ti~eni~~~~~---~~----~~~~~~~~~~~~l~~~~~~~~~g~~t~v~~~g~~LSgGqkqRi~lAra 496 (1156)
++|+|. ++..|++||+.++.. .+ .++..+.++..++.+.++ +...+||||||||++||||
T Consensus 80 ~~q~~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-----------~~~~~LSgG~~qrv~lara 148 (211)
T cd03225 80 VFQNPDDQFFGPTVEEEVAFGLENLGLPEEEIEERVEEALELVGLEGLRD-----------RSPFTLSGGQKQRVAIAGV 148 (211)
T ss_pred EecChhhhcCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCcHhhhc-----------CCcccCCHHHHHHHHHHHH
Confidence 999983 567899999987521 22 234455666667654443 4457899999999999999
Q ss_pred hccCCCeeeeeCCCCCcCHHHHHHHHHHHHh--cCCCEEEEEccCCCcccc-CCEEEEEeCCe
Q 037346 497 LYQDADIFLLDDPFSPVDDHTGAHLFKFCWV--SSSKTVIYATHQVEFLPA-ADLILVIKDGK 556 (1156)
Q Consensus 497 l~~~~~illlDep~s~lD~~~~~~i~~~~~~--~~~~tvi~vtH~~~~~~~-~d~i~~l~~G~ 556 (1156)
|+.+|+++||||||++||+.+++.+.+.+.. .+|+|+|++||+++.+.. ||+|++|++|+
T Consensus 149 l~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~tvi~~sH~~~~~~~~~d~i~~l~~G~ 211 (211)
T cd03225 149 LAMDPDILLLDEPTAGLDPAGRRELLELLKKLKAEGKTIIIVTHDLDLLLELADRVIVLEDGK 211 (211)
T ss_pred HhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEeCCC
Confidence 9999999999999999999999999887644 347899999999999875 99999999985
|
The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems. |
| >PRK11248 tauB taurine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-36 Score=334.88 Aligned_cols=192 Identities=28% Similarity=0.444 Sum_probs=164.3
Q ss_pred EEEeeeEEEeCCCCCCCccccceEEeeCCeEEEEEcCCCCChHHHHHHHhCCCCCCCcEEEEcCe--------EEEEecC
Q 037346 358 IEIIDGSFSWDFSSPNPTLRNINLKVFHGMRVAVCGTVGSGKSSCLSCILGGVPKESGIIRLCGT--------KAYVAQS 429 (1156)
Q Consensus 358 i~~~~~~f~~~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKSTll~~i~g~~~~~~G~i~~~g~--------~~~v~Q~ 429 (1156)
++++|+++.|+ ++++|+|+||+|++|++++|+||||||||||+++|+|+++|++|+|.++|. ++|++|+
T Consensus 2 l~~~~l~~~~~---~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~v~q~ 78 (255)
T PRK11248 2 LQISHLYADYG---GKPALEDINLTLESGELLVVLGPSGCGKTTLLNLIAGFVPYQHGSITLDGKPVEGPGAERGVVFQN 78 (255)
T ss_pred EEEEEEEEEeC---CeeeEeeeeEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCCcEEEEeCC
Confidence 78999999996 357999999999999999999999999999999999999999999999873 6999999
Q ss_pred CcCCC-ccHHHHhhcCCC---CC----HHHHHHHHHHhCCchhhhhCCCCCccccccCCCCCCHHHHHHHHHHHhhccCC
Q 037346 430 PWIQS-GKIEENILFGKE---MD----RERYERVLEACSLKKDLEVLPFGDQTIIGERGINLSGGQKQRIQIARPLYQDA 501 (1156)
Q Consensus 430 ~~~~~-~ti~eni~~~~~---~~----~~~~~~~~~~~~l~~~~~~~~~g~~t~v~~~g~~LSgGqkqRi~lAral~~~~ 501 (1156)
+.++. .|++||+.++.. .. .++..++++.+++.+... ..+.+||||||||++|||||+.+|
T Consensus 79 ~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~-----------~~~~~LSgGq~qrl~laral~~~p 147 (255)
T PRK11248 79 EGLLPWRNVQDNVAFGLQLAGVEKMQRLEIAHQMLKKVGLEGAEK-----------RYIWQLSGGQRQRVGIARALAANP 147 (255)
T ss_pred CccCCCCcHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCChhHhh-----------CChhhCCHHHHHHHHHHHHHhcCC
Confidence 98776 599999987521 12 234566777777754333 345789999999999999999999
Q ss_pred CeeeeeCCCCCcCHHHHHHHHHHHHh---cCCCEEEEEccCCCccc-cCCEEEEEe--CCeEEEccCh
Q 037346 502 DIFLLDDPFSPVDDHTGAHLFKFCWV---SSSKTVIYATHQVEFLP-AADLILVIK--DGKITQAGKY 563 (1156)
Q Consensus 502 ~illlDep~s~lD~~~~~~i~~~~~~---~~~~tvi~vtH~~~~~~-~~d~i~~l~--~G~i~~~g~~ 563 (1156)
+++||||||++||+.+.+.+.+.+.. ..|+|+|++||+++.+. .||+|++|+ +|++++.++.
T Consensus 148 ~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~g~tviivsH~~~~~~~~~d~i~~l~~~~G~i~~~~~~ 215 (255)
T PRK11248 148 QLLLLDEPFGALDAFTREQMQTLLLKLWQETGKQVLLITHDIEEAVFMATELVLLSPGPGRVVERLPL 215 (255)
T ss_pred CEEEEeCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeCCCcEEEEEecC
Confidence 99999999999999999998876643 24899999999999886 599999998 5999987764
|
|
| >PRK14236 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-36 Score=337.34 Aligned_cols=204 Identities=27% Similarity=0.403 Sum_probs=171.9
Q ss_pred CccEEEeeeEEEeCCCCCCCccccceEEeeCCeEEEEEcCCCCChHHHHHHHhCCCCC-----CCcEEEEcC--------
Q 037346 355 DTAIEIIDGSFSWDFSSPNPTLRNINLKVFHGMRVAVCGTVGSGKSSCLSCILGGVPK-----ESGIIRLCG-------- 421 (1156)
Q Consensus 355 ~~~i~~~~~~f~~~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKSTll~~i~g~~~~-----~~G~i~~~g-------- 421 (1156)
...++++|++++|+ ++++|+|+||+|++||+++|+||||||||||+++|+|+++| ++|+|.++|
T Consensus 23 ~~~l~~~nl~~~~~---~~~il~~vs~~i~~Ge~~~I~G~nGsGKSTLl~~laGl~~~~~~~~~~G~i~i~g~~i~~~~~ 99 (272)
T PRK14236 23 QTALEVRNLNLFYG---DKQALFDISMRIPKNRVTAFIGPSGCGKSTLLRCFNRMNDLVDNCRIEGEIRLDGQNIYDKKV 99 (272)
T ss_pred CcEEEEEEEEEEEC---CeeEeeeEEEEEcCCCEEEEECCCCCCHHHHHHHHHhcCCCccCCCCceEEEECCEECccccc
Confidence 44699999999996 34799999999999999999999999999999999999884 899999876
Q ss_pred -------eEEEEecCCcCCCccHHHHhhcCCC---C-C----HHHHHHHHHHhCCchhhhhCCCCCccccccCCCCCCHH
Q 037346 422 -------TKAYVAQSPWIQSGKIEENILFGKE---M-D----RERYERVLEACSLKKDLEVLPFGDQTIIGERGINLSGG 486 (1156)
Q Consensus 422 -------~~~~v~Q~~~~~~~ti~eni~~~~~---~-~----~~~~~~~~~~~~l~~~~~~~~~g~~t~v~~~g~~LSgG 486 (1156)
.++|++|++.+++.|++||+.++.. . . +++..++++.+++.+++. +..++.+.+||||
T Consensus 100 ~~~~~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-------~~~~~~~~~LS~G 172 (272)
T PRK14236 100 DVAELRRRVGMVFQRPNPFPKSIYENVVYGLRLQGINNRRVLDEAVERSLRGAALWDEVK-------DRLHENAFGLSGG 172 (272)
T ss_pred CHHHHhccEEEEecCCccCcccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCChhHH-------HHhhCCcccCCHH
Confidence 2689999999888899999987521 1 1 133455666666654332 2345677899999
Q ss_pred HHHHHHHHHhhccCCCeeeeeCCCCCcCHHHHHHHHHHHHh-cCCCEEEEEccCCCccc-cCCEEEEEeCCeEEEccChH
Q 037346 487 QKQRIQIARPLYQDADIFLLDDPFSPVDDHTGAHLFKFCWV-SSSKTVIYATHQVEFLP-AADLILVIKDGKITQAGKYS 564 (1156)
Q Consensus 487 qkqRi~lAral~~~~~illlDep~s~lD~~~~~~i~~~~~~-~~~~tvi~vtH~~~~~~-~~d~i~~l~~G~i~~~g~~~ 564 (1156)
||||++||||++.+|+++||||||++||+.++..+.+.+.. .+++|+|++||+++.+. .||+|++|++|++++.|+++
T Consensus 173 q~qrv~laral~~~p~lllLDEPt~gLD~~~~~~l~~~L~~~~~~~tiiivtH~~~~~~~~~d~i~~l~~G~i~~~g~~~ 252 (272)
T PRK14236 173 QQQRLVIARAIAIEPEVLLLDEPTSALDPISTLKIEELITELKSKYTIVIVTHNMQQAARVSDYTAFMYMGKLVEYGDTD 252 (272)
T ss_pred HHHHHHHHHHHHCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCeEEEEeCCHHHHHhhCCEEEEEECCEEEecCCHH
Confidence 99999999999999999999999999999999988776644 34689999999999875 59999999999999999998
Q ss_pred HHHh
Q 037346 565 DILN 568 (1156)
Q Consensus 565 ~l~~ 568 (1156)
++..
T Consensus 253 ~~~~ 256 (272)
T PRK14236 253 TLFT 256 (272)
T ss_pred HHhc
Confidence 8764
|
|
| >TIGR03873 F420-0_ABC_ATP proposed F420-0 ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-36 Score=335.68 Aligned_cols=197 Identities=24% Similarity=0.385 Sum_probs=167.9
Q ss_pred EEEeeeEEEeCCCCCCCccccceEEeeCCeEEEEEcCCCCChHHHHHHHhCCCCCCCcEEEEcCe-------------EE
Q 037346 358 IEIIDGSFSWDFSSPNPTLRNINLKVFHGMRVAVCGTVGSGKSSCLSCILGGVPKESGIIRLCGT-------------KA 424 (1156)
Q Consensus 358 i~~~~~~f~~~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKSTll~~i~g~~~~~~G~i~~~g~-------------~~ 424 (1156)
++++|+++.|+ ++++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|. ++
T Consensus 2 l~~~~l~~~~~---~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 78 (256)
T TIGR03873 2 LRLSRVSWSAG---GRLIVDGVDVTAPPGSLTGLLGPNGSGKSTLLRLLAGALRPDAGTVDLAGVDLHGLSRRARARRVA 78 (256)
T ss_pred ceEEeEEEEEC---CEEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCCCEEEECCEEcccCCHHHHhhheE
Confidence 67899999996 357999999999999999999999999999999999999999999999882 68
Q ss_pred EEecCCcC-CCccHHHHhhcCCC---------C--CHHHHHHHHHHhCCchhhhhCCCCCccccccCCCCCCHHHHHHHH
Q 037346 425 YVAQSPWI-QSGKIEENILFGKE---------M--DRERYERVLEACSLKKDLEVLPFGDQTIIGERGINLSGGQKQRIQ 492 (1156)
Q Consensus 425 ~v~Q~~~~-~~~ti~eni~~~~~---------~--~~~~~~~~~~~~~l~~~~~~~~~g~~t~v~~~g~~LSgGqkqRi~ 492 (1156)
|++|++.+ +..|++||+.++.. . +.++..++++.+++.+.. ...+.+||||||||++
T Consensus 79 ~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-----------~~~~~~LS~G~~qrl~ 147 (256)
T TIGR03873 79 LVEQDSDTAVPLTVRDVVALGRIPHRSLWAGDSPHDAAVVDRALARTELSHLA-----------DRDMSTLSGGERQRVH 147 (256)
T ss_pred EecccCccCCCCCHHHHHHhcchhhhhhccCCCHHHHHHHHHHHHHcCcHhhh-----------cCCcccCCHHHHHHHH
Confidence 99999854 56799999987531 0 122455566666664333 3455789999999999
Q ss_pred HHHhhccCCCeeeeeCCCCCcCHHHHHHHHHHHHh--cCCCEEEEEccCCCccc-cCCEEEEEeCCeEEEccChHHHHh
Q 037346 493 IARPLYQDADIFLLDDPFSPVDDHTGAHLFKFCWV--SSSKTVIYATHQVEFLP-AADLILVIKDGKITQAGKYSDILN 568 (1156)
Q Consensus 493 lAral~~~~~illlDep~s~lD~~~~~~i~~~~~~--~~~~tvi~vtH~~~~~~-~~d~i~~l~~G~i~~~g~~~~l~~ 568 (1156)
||||++.+|+++||||||++||+.+...+.+.+.. .+++|+|++||+++.+. .||+|++|++|++++.|+.+++..
T Consensus 148 la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 226 (256)
T TIGR03873 148 VARALAQEPKLLLLDEPTNHLDVRAQLETLALVRELAATGVTVVAALHDLNLAASYCDHVVVLDGGRVVAAGPPREVLT 226 (256)
T ss_pred HHHHHhcCCCEEEEcCccccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeCCCEEEecCHHHhhC
Confidence 99999999999999999999999999988776643 34789999999999985 599999999999999999888754
|
This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter. |
| >PRK10908 cell division protein FtsE; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-36 Score=328.82 Aligned_cols=188 Identities=23% Similarity=0.337 Sum_probs=159.5
Q ss_pred EEEeeeEEEeCCCCCCCccccceEEeeCCeEEEEEcCCCCChHHHHHHHhCCCCCCCcEEEEcCe---------------
Q 037346 358 IEIIDGSFSWDFSSPNPTLRNINLKVFHGMRVAVCGTVGSGKSSCLSCILGGVPKESGIIRLCGT--------------- 422 (1156)
Q Consensus 358 i~~~~~~f~~~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKSTll~~i~g~~~~~~G~i~~~g~--------------- 422 (1156)
++++|+++.|+. ++++|+|+||+|++|++++|+||||||||||+++|+|+++|++|+|.++|.
T Consensus 2 l~~~~l~~~~~~--~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~~~~ 79 (222)
T PRK10908 2 IRFEHVSKAYLG--GRQALQGVTFHMRPGEMAFLTGHSGAGKSTLLKLICGIERPSAGKIWFSGHDITRLKNREVPFLRR 79 (222)
T ss_pred EEEEeeEEEecC--CCeEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEcccCChhHHHHHHh
Confidence 789999999942 357999999999999999999999999999999999999999999999873
Q ss_pred -EEEEecCCcC-CCccHHHHhhcCCC---CCH----HHHHHHHHHhCCchhhhhCCCCCccccccCCCCCCHHHHHHHHH
Q 037346 423 -KAYVAQSPWI-QSGKIEENILFGKE---MDR----ERYERVLEACSLKKDLEVLPFGDQTIIGERGINLSGGQKQRIQI 493 (1156)
Q Consensus 423 -~~~v~Q~~~~-~~~ti~eni~~~~~---~~~----~~~~~~~~~~~l~~~~~~~~~g~~t~v~~~g~~LSgGqkqRi~l 493 (1156)
++|++|+|.+ ++.|++||+.++.. .+. ++.++.++..++.+... ....+||||||||++|
T Consensus 80 ~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-----------~~~~~LS~G~~qrv~l 148 (222)
T PRK10908 80 QIGMIFQDHHLLMDRTVYDNVAIPLIIAGASGDDIRRRVSAALDKVGLLDKAK-----------NFPIQLSGGEQQRVGI 148 (222)
T ss_pred heEEEecCccccccccHHHHHHhHHHhcCCCHHHHHHHHHHHHHHcCChhhhh-----------CCchhCCHHHHHHHHH
Confidence 6899999986 46799999987531 222 23445666666654433 3457899999999999
Q ss_pred HHhhccCCCeeeeeCCCCCcCHHHHHHHHHHHHh--cCCCEEEEEccCCCcccc-CCEEEEEeCCeEE
Q 037346 494 ARPLYQDADIFLLDDPFSPVDDHTGAHLFKFCWV--SSSKTVIYATHQVEFLPA-ADLILVIKDGKIT 558 (1156)
Q Consensus 494 Aral~~~~~illlDep~s~lD~~~~~~i~~~~~~--~~~~tvi~vtH~~~~~~~-~d~i~~l~~G~i~ 558 (1156)
|||++.+|+++||||||++||+.+++.+.+.+.. .++.|+|++||+++.+.. ||+|++|++|+++
T Consensus 149 aral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~ 216 (222)
T PRK10908 149 ARAVVNKPAVLLADEPTGNLDDALSEGILRLFEEFNRVGVTVLMATHDIGLISRRSYRMLTLSDGHLH 216 (222)
T ss_pred HHHHHcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEEc
Confidence 9999999999999999999999999988776543 347899999999999865 9999999999985
|
|
| >PRK14267 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-36 Score=335.10 Aligned_cols=203 Identities=26% Similarity=0.394 Sum_probs=169.4
Q ss_pred cEEEeeeEEEeCCCCCCCccccceEEeeCCeEEEEEcCCCCChHHHHHHHhCCCCC-----CCcEEEEcC----------
Q 037346 357 AIEIIDGSFSWDFSSPNPTLRNINLKVFHGMRVAVCGTVGSGKSSCLSCILGGVPK-----ESGIIRLCG---------- 421 (1156)
Q Consensus 357 ~i~~~~~~f~~~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKSTll~~i~g~~~~-----~~G~i~~~g---------- 421 (1156)
.++++|+++.|+ ++++|+|+||+|++||+++|+||||||||||+++|+|+++| ++|+|.++|
T Consensus 4 ~l~~~~l~~~~~---~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~ 80 (253)
T PRK14267 4 AIETVNLRVYYG---SNHVIKGVDLKIPQNGVFALMGPSGCGKSTLLRTFNRLLELNEEARVEGEVRLFGRNIYSPDVDP 80 (253)
T ss_pred eEEEEeEEEEeC---CeeeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCcccCCCCceEEEECCEEccccccCh
Confidence 589999999996 35799999999999999999999999999999999999987 499999876
Q ss_pred -----eEEEEecCCcCCCc-cHHHHhhcCCC---C--CH----HHHHHHHHHhCCchhhhhCCCCCccccccCCCCCCHH
Q 037346 422 -----TKAYVAQSPWIQSG-KIEENILFGKE---M--DR----ERYERVLEACSLKKDLEVLPFGDQTIIGERGINLSGG 486 (1156)
Q Consensus 422 -----~~~~v~Q~~~~~~~-ti~eni~~~~~---~--~~----~~~~~~~~~~~l~~~~~~~~~g~~t~v~~~g~~LSgG 486 (1156)
.++|++|++.++.. |++||+.++.. . .. ++..++++..++...+. ......+.+||||
T Consensus 81 ~~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-------~~~~~~~~~LS~G 153 (253)
T PRK14267 81 IEVRREVGMVFQYPNPFPHLTIYDNVAIGVKLNGLVKSKKELDERVEWALKKAALWDEVK-------DRLNDYPSNLSGG 153 (253)
T ss_pred HHHhhceeEEecCCccCCCCcHHHHHHHHHHhcCccCCHHHHHHHHHHHHHHcCCccchh-------hhhccChhhCCHH
Confidence 26899999988865 99999987521 1 11 23445566666543321 1234567899999
Q ss_pred HHHHHHHHHhhccCCCeeeeeCCCCCcCHHHHHHHHHHHHh-cCCCEEEEEccCCCccc-cCCEEEEEeCCeEEEccChH
Q 037346 487 QKQRIQIARPLYQDADIFLLDDPFSPVDDHTGAHLFKFCWV-SSSKTVIYATHQVEFLP-AADLILVIKDGKITQAGKYS 564 (1156)
Q Consensus 487 qkqRi~lAral~~~~~illlDep~s~lD~~~~~~i~~~~~~-~~~~tvi~vtH~~~~~~-~~d~i~~l~~G~i~~~g~~~ 564 (1156)
||||++||||++.+|+++||||||++||+.+++++.+.+.. .+++|+|++||+++.+. .||+|++|++|++++.|+++
T Consensus 154 ~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~ 233 (253)
T PRK14267 154 QRQRLVIARALAMKPKILLMDEPTANIDPVGTAKIEELLFELKKEYTIVLVTHSPAQAARVSDYVAFLYLGKLIEVGPTR 233 (253)
T ss_pred HHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhhCCEEEEEECCHHHHHhhCCEEEEEECCEEEEeCCHH
Confidence 99999999999999999999999999999999998876644 34689999999999876 59999999999999999998
Q ss_pred HHHhc
Q 037346 565 DILNS 569 (1156)
Q Consensus 565 ~l~~~ 569 (1156)
++...
T Consensus 234 ~~~~~ 238 (253)
T PRK14267 234 KVFEN 238 (253)
T ss_pred HHHhC
Confidence 87643
|
|
| >PRK14238 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-36 Score=336.63 Aligned_cols=204 Identities=24% Similarity=0.368 Sum_probs=169.4
Q ss_pred ccEEEeeeEEEeCCCCCCCccccceEEeeCCeEEEEEcCCCCChHHHHHHHhCCCC-----CCCcEEEEcC---------
Q 037346 356 TAIEIIDGSFSWDFSSPNPTLRNINLKVFHGMRVAVCGTVGSGKSSCLSCILGGVP-----KESGIIRLCG--------- 421 (1156)
Q Consensus 356 ~~i~~~~~~f~~~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKSTll~~i~g~~~-----~~~G~i~~~g--------- 421 (1156)
..++++|+++.|+ +.++|+|+||+|++||+++|+|+||||||||+++|+|+++ |++|+|.++|
T Consensus 23 ~~l~~~~l~~~~~---~~~il~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~ 99 (271)
T PRK14238 23 VVFDTQNLNLWYG---EDHALKNINLDIHENEVTAIIGPSGCGKSTYIKTLNRMVELVPSVKTTGKILYRDQNIFDKSYS 99 (271)
T ss_pred eEEEEeeeEEEEC---CcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhccCCCCCCCceeEEECCEEccccccc
Confidence 3699999999996 3469999999999999999999999999999999999987 6999999987
Q ss_pred ------eEEEEecCCcCCCccHHHHhhcCCC---C-CHH----HHHHHHHHhCCchhhhhCCCCCccccccCCCCCCHHH
Q 037346 422 ------TKAYVAQSPWIQSGKIEENILFGKE---M-DRE----RYERVLEACSLKKDLEVLPFGDQTIIGERGINLSGGQ 487 (1156)
Q Consensus 422 ------~~~~v~Q~~~~~~~ti~eni~~~~~---~-~~~----~~~~~~~~~~l~~~~~~~~~g~~t~v~~~g~~LSgGq 487 (1156)
.++|++|+|.++..|++||+.++.. . +++ +..+.++..++.+.+. ...+..+.+|||||
T Consensus 100 ~~~~~~~i~~v~q~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~-------~~~~~~~~~LSgGe 172 (271)
T PRK14238 100 VEELRTNVGMVFQKPNPFPKSIYDNVTYGPKIHGIKDKKTLDEIVEKSLRGAAIWDELK-------DRLHDNAYGLSGGQ 172 (271)
T ss_pred HHHHhhhEEEEecCCccccccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCcchHH-------HHHhcCcccCCHHH
Confidence 2689999999988899999987521 1 111 1233344443322221 23356778999999
Q ss_pred HHHHHHHHhhccCCCeeeeeCCCCCcCHHHHHHHHHHHHh-cCCCEEEEEccCCCccc-cCCEEEEEeCCeEEEccChHH
Q 037346 488 KQRIQIARPLYQDADIFLLDDPFSPVDDHTGAHLFKFCWV-SSSKTVIYATHQVEFLP-AADLILVIKDGKITQAGKYSD 565 (1156)
Q Consensus 488 kqRi~lAral~~~~~illlDep~s~lD~~~~~~i~~~~~~-~~~~tvi~vtH~~~~~~-~~d~i~~l~~G~i~~~g~~~~ 565 (1156)
|||++|||||+.+|+++||||||++||+.+.+++.+.+.. .+++|+|++||+++.+. .||++++|++|++++.|++++
T Consensus 173 ~qrv~laraL~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tiiivsH~~~~i~~~~d~i~~l~~G~i~~~g~~~~ 252 (271)
T PRK14238 173 QQRLCIARCLAIEPDVILMDEPTSALDPISTLKVEELVQELKKDYSIIIVTHNMQQAARISDKTAFFLNGYVNEYDDTDK 252 (271)
T ss_pred HHHHHHHHHHHcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHcCCEEEEEEcCHHHHHHhCCEEEEEECCEEEEeCCHHH
Confidence 9999999999999999999999999999999998876644 34689999999999976 599999999999999999988
Q ss_pred HHhc
Q 037346 566 ILNS 569 (1156)
Q Consensus 566 l~~~ 569 (1156)
+...
T Consensus 253 ~~~~ 256 (271)
T PRK14238 253 IFSN 256 (271)
T ss_pred HHcC
Confidence 8653
|
|
| >TIGR01188 drrA daunorubicin resistance ABC transporter ATP-binding subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-36 Score=344.65 Aligned_cols=186 Identities=24% Similarity=0.371 Sum_probs=161.1
Q ss_pred CCCccccceEEeeCCeEEEEEcCCCCChHHHHHHHhCCCCCCCcEEEEcCe------------EEEEecCCcCCCc-cHH
Q 037346 372 PNPTLRNINLKVFHGMRVAVCGTVGSGKSSCLSCILGGVPKESGIIRLCGT------------KAYVAQSPWIQSG-KIE 438 (1156)
Q Consensus 372 ~~~~l~~i~l~i~~g~~~~ivG~~GsGKSTll~~i~g~~~~~~G~i~~~g~------------~~~v~Q~~~~~~~-ti~ 438 (1156)
++++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|. ++|+||++.++.. |++
T Consensus 5 ~~~~l~~vs~~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~ 84 (302)
T TIGR01188 5 DFKAVDGVNFKVREGEVFGFLGPNGAGKTTTIRMLTTLLRPTSGTARVAGYDVVREPRKVRRSIGIVPQYASVDEDLTGR 84 (302)
T ss_pred CeeEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEcccCHHHHHhhcEEecCCCCCCCCCcHH
Confidence 357999999999999999999999999999999999999999999999882 7999999988765 999
Q ss_pred HHhhcCCC---CC----HHHHHHHHHHhCCchhhhhCCCCCccccccCCCCCCHHHHHHHHHHHhhccCCCeeeeeCCCC
Q 037346 439 ENILFGKE---MD----RERYERVLEACSLKKDLEVLPFGDQTIIGERGINLSGGQKQRIQIARPLYQDADIFLLDDPFS 511 (1156)
Q Consensus 439 eni~~~~~---~~----~~~~~~~~~~~~l~~~~~~~~~g~~t~v~~~g~~LSgGqkqRi~lAral~~~~~illlDep~s 511 (1156)
||+.+... .. .++.+++++.+++.+..+ .+..+||||||||++|||||+++|+++||||||+
T Consensus 85 e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-----------~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~ 153 (302)
T TIGR01188 85 ENLEMMGRLYGLPKDEAEERAEELLELFELGEAAD-----------RPVGTYSGGMRRRLDIAASLIHQPDVLFLDEPTT 153 (302)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhHhC-----------CchhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCc
Confidence 99986421 11 235667778877764432 3457899999999999999999999999999999
Q ss_pred CcCHHHHHHHHHHHHh--cCCCEEEEEccCCCccc-cCCEEEEEeCCeEEEccChHHHHh
Q 037346 512 PVDDHTGAHLFKFCWV--SSSKTVIYATHQVEFLP-AADLILVIKDGKITQAGKYSDILN 568 (1156)
Q Consensus 512 ~lD~~~~~~i~~~~~~--~~~~tvi~vtH~~~~~~-~~d~i~~l~~G~i~~~g~~~~l~~ 568 (1156)
+||+.+++.+.+.+.. .+|+|+|++||+++.+. .||+|++|++|++++.|+++++.+
T Consensus 154 gLD~~~~~~l~~~l~~~~~~g~tvi~~sH~~~~~~~~~d~v~~l~~G~i~~~g~~~~l~~ 213 (302)
T TIGR01188 154 GLDPRTRRAIWDYIRALKEEGVTILLTTHYMEEADKLCDRIAIIDHGRIIAEGTPEELKR 213 (302)
T ss_pred CCCHHHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEECCHHHHHH
Confidence 9999999998876644 35899999999999986 599999999999999999988764
|
This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc. |
| >PRK14243 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-36 Score=335.20 Aligned_cols=204 Identities=25% Similarity=0.372 Sum_probs=171.5
Q ss_pred ccEEEeeeEEEeCCCCCCCccccceEEeeCCeEEEEEcCCCCChHHHHHHHhCCCC-----CCCcEEEEcC---------
Q 037346 356 TAIEIIDGSFSWDFSSPNPTLRNINLKVFHGMRVAVCGTVGSGKSSCLSCILGGVP-----KESGIIRLCG--------- 421 (1156)
Q Consensus 356 ~~i~~~~~~f~~~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKSTll~~i~g~~~-----~~~G~i~~~g--------- 421 (1156)
..++++|++++|+ +.++|+|+||+|++||+++|+|+||||||||+++|+|+++ |++|+|.++|
T Consensus 9 ~~l~i~~v~~~~~---~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~ 85 (264)
T PRK14243 9 TVLRTENLNVYYG---SFLAVKNVWLDIPKNQITAFIGPSGCGKSTILRCFNRLNDLIPGFRVEGKVTFHGKNLYAPDVD 85 (264)
T ss_pred eEEEEeeeEEEEC---CEEEeecceEEEcCCCEEEEECCCCCCHHHHHHHHHhhhcccCCCCCceEEEECCEEccccccC
Confidence 3689999999996 3479999999999999999999999999999999999976 3799999877
Q ss_pred ------eEEEEecCCcCCCccHHHHhhcCCCC---C---HHHHHHHHHHhCCchhhhhCCCCCccccccCCCCCCHHHHH
Q 037346 422 ------TKAYVAQSPWIQSGKIEENILFGKEM---D---RERYERVLEACSLKKDLEVLPFGDQTIIGERGINLSGGQKQ 489 (1156)
Q Consensus 422 ------~~~~v~Q~~~~~~~ti~eni~~~~~~---~---~~~~~~~~~~~~l~~~~~~~~~g~~t~v~~~g~~LSgGqkq 489 (1156)
.++|++|++.+++.|++||+.++... . +++..++++.+++...+.. ..+..+.+|||||||
T Consensus 86 ~~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~-------~~~~~~~~LSgGq~q 158 (264)
T PRK14243 86 PVEVRRRIGMVFQKPNPFPKSIYDNIAYGARINGYKGDMDELVERSLRQAALWDEVKD-------KLKQSGLSLSGGQQQ 158 (264)
T ss_pred hHHHhhhEEEEccCCccccccHHHHHHhhhhhcCcchHHHHHHHHHHHHhCchhhHHH-------HhcCCcccCCHHHHH
Confidence 26999999998888999999876421 1 2344556666666543321 234567899999999
Q ss_pred HHHHHHhhccCCCeeeeeCCCCCcCHHHHHHHHHHHHh-cCCCEEEEEccCCCccc-cCCEEEEEe---------CCeEE
Q 037346 490 RIQIARPLYQDADIFLLDDPFSPVDDHTGAHLFKFCWV-SSSKTVIYATHQVEFLP-AADLILVIK---------DGKIT 558 (1156)
Q Consensus 490 Ri~lAral~~~~~illlDep~s~lD~~~~~~i~~~~~~-~~~~tvi~vtH~~~~~~-~~d~i~~l~---------~G~i~ 558 (1156)
|++|||||+.+|+++||||||++||+.+++.+.+.+.. .+++|+|++||+++.+. .||+|++|+ +|+++
T Consensus 159 rv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~tvi~vtH~~~~~~~~~d~v~~l~~~~~~~~~~~g~i~ 238 (264)
T PRK14243 159 RLCIARAIAVQPEVILMDEPCSALDPISTLRIEELMHELKEQYTIIIVTHNMQQAARVSDMTAFFNVELTEGGGRYGYLV 238 (264)
T ss_pred HHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEecccccccccCceEE
Confidence 99999999999999999999999999999998876644 34589999999999876 599999998 89999
Q ss_pred EccChHHHHhc
Q 037346 559 QAGKYSDILNS 569 (1156)
Q Consensus 559 ~~g~~~~l~~~ 569 (1156)
+.|+++++.+.
T Consensus 239 ~~~~~~~~~~~ 249 (264)
T PRK14243 239 EFDRTEKIFNS 249 (264)
T ss_pred EeCCHHHHHhC
Confidence 99999998653
|
|
| >COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.6e-37 Score=309.24 Aligned_cols=195 Identities=24% Similarity=0.405 Sum_probs=173.4
Q ss_pred EEEEEEEEEEcCCCCceeeCCCCCCHHHHHHHHhhcccCCCceEEEcCeeCC-CCChHHHhhcCeeeccccccccc-cch
Q 037346 948 VNIRHLQVRYAPNLPLVLRGRTGSGKSTLIQTLFRIVESTAGHILIDGKDIS-LIGLHDLRTRLSIIPQDPTMFEG-TTR 1025 (1156)
Q Consensus 948 I~~~~Vsf~Y~~~~~~vL~G~SGsGKSTL~~lL~rl~~p~~G~I~idG~di~-~i~~~~LR~~i~~VpQdp~LF~g-TIr 1025 (1156)
-.+++|+++..+++.+++.||||||||||+++|.||-+|++|+|.|||.++. ..++..+|+++|+|+|+..||.- |+.
T Consensus 16 ~VLkgi~l~v~~Gevv~iiGpSGSGKSTlLRclN~LE~~~~G~I~i~g~~~~~~~~~~~~R~~vGmVFQ~fnLFPHlTvl 95 (240)
T COG1126 16 EVLKGISLSVEKGEVVVIIGPSGSGKSTLLRCLNGLEEPDSGSITVDGEDVGDKKDILKLRRKVGMVFQQFNLFPHLTVL 95 (240)
T ss_pred EEecCcceeEcCCCEEEEECCCCCCHHHHHHHHHCCcCCCCceEEECCEeccchhhHHHHHHhcCeecccccccccchHH
Confidence 3577888888888888899999999999999999999999999999998774 34899999999999999999965 999
Q ss_pred hccCCCC----C----CCHHHHHHHHHHcCCChHHHhhcCCcccc-------ccccccCCCEEEEecCCcCCCHHHHHHH
Q 037346 1026 SNLDPLE----E----HADEQIWEALDKCQLGDEVRKKKGKLDSQ-------GRVLLKKSKVLVLDEATASVDTATDNQI 1090 (1156)
Q Consensus 1026 ~Nl~~~~----~----~~deei~~al~~~~l~~~i~~lp~gl~s~-------ARALLr~~~ILiLDEaTS~LD~~te~~I 1090 (1156)
+|+.... . .+++.-.+.|+++||.|.....|..|.-+ ||||.-+|+|+++|||||+||||.-..+
T Consensus 96 eNv~lap~~v~~~~k~eA~~~A~~lL~~VGL~~ka~~yP~qLSGGQqQRVAIARALaM~P~vmLFDEPTSALDPElv~EV 175 (240)
T COG1126 96 ENVTLAPVKVKKLSKAEAREKALELLEKVGLADKADAYPAQLSGGQQQRVAIARALAMDPKVMLFDEPTSALDPELVGEV 175 (240)
T ss_pred HHHHhhhHHHcCCCHHHHHHHHHHHHHHcCchhhhhhCccccCcHHHHHHHHHHHHcCCCCEEeecCCcccCCHHHHHHH
Confidence 9997532 1 22445678899999999999999988755 8999999999999999999999999999
Q ss_pred HHHHHHhc-CCceEEEeecCcccccc-cCEEEEEeCcEEeeecChhHHhcCCCC
Q 037346 1091 QQTLRQHF-SDCTVVTIAHRITSVLD-SAMVLLLNHGLIKEYDSPTKLLENKSS 1142 (1156)
Q Consensus 1091 ~~~l~~~~-~~~TvI~IaHrl~ti~~-~D~I~Vl~~G~IvE~G~~~eLl~~~~g 1142 (1156)
.+.++++. .|.|+|+|||.+...++ ||||+.||+|+|+|+|+|+++..+++.
T Consensus 176 L~vm~~LA~eGmTMivVTHEM~FAr~VadrviFmd~G~iie~g~p~~~f~~p~~ 229 (240)
T COG1126 176 LDVMKDLAEEGMTMIIVTHEMGFAREVADRVIFMDQGKIIEEGPPEEFFDNPKS 229 (240)
T ss_pred HHHHHHHHHcCCeEEEEechhHHHHHhhheEEEeeCCEEEEecCHHHHhcCCCC
Confidence 99999876 47899999999999886 999999999999999999999988764
|
|
| >PRK11308 dppF dipeptide transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-36 Score=342.75 Aligned_cols=204 Identities=23% Similarity=0.344 Sum_probs=170.7
Q ss_pred ccEEEeeeEEEeCCCC-------CCCccccceEEeeCCeEEEEEcCCCCChHHHHHHHhCCCCCCCcEEEEcC-------
Q 037346 356 TAIEIIDGSFSWDFSS-------PNPTLRNINLKVFHGMRVAVCGTVGSGKSSCLSCILGGVPKESGIIRLCG------- 421 (1156)
Q Consensus 356 ~~i~~~~~~f~~~~~~-------~~~~l~~i~l~i~~g~~~~ivG~~GsGKSTll~~i~g~~~~~~G~i~~~g------- 421 (1156)
..|+++|+++.|+... ...+|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.++|
T Consensus 4 ~~l~v~nl~~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~IvG~sGsGKSTLl~~l~gl~~p~~G~i~~~g~~l~~~~ 83 (327)
T PRK11308 4 PLLQAIDLKKHYPVKRGLFKPERLVKALDGVSFTLERGKTLAVVGESGCGKSTLARLLTMIETPTGGELYYQGQDLLKAD 83 (327)
T ss_pred ceEEEeeeEEEEcCCCCccccCCceeEEeeeEEEECCCCEEEEECCCCCcHHHHHHHHHcCCCCCCcEEEECCEEcCcCC
Confidence 3589999999996321 24689999999999999999999999999999999999999999999987
Q ss_pred ---------eEEEEecCCc--CC-CccHHHHhhcC----CCCC----HHHHHHHHHHhCCchhhhhCCCCCccccccCCC
Q 037346 422 ---------TKAYVAQSPW--IQ-SGKIEENILFG----KEMD----RERYERVLEACSLKKDLEVLPFGDQTIIGERGI 481 (1156)
Q Consensus 422 ---------~~~~v~Q~~~--~~-~~ti~eni~~~----~~~~----~~~~~~~~~~~~l~~~~~~~~~g~~t~v~~~g~ 481 (1156)
+++||+|+|. +. ..|+.+|+... .... .++..++++.++|.+.. ....+.
T Consensus 84 ~~~~~~~r~~i~~v~Q~~~~~l~p~~~v~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~----------~~~~p~ 153 (327)
T PRK11308 84 PEAQKLLRQKIQIVFQNPYGSLNPRKKVGQILEEPLLINTSLSAAERREKALAMMAKVGLRPEH----------YDRYPH 153 (327)
T ss_pred HHHHHHHhCCEEEEEcCchhhcCCccCHHHHHHHHHHHccCCCHHHHHHHHHHHHHHCCCChHH----------hcCCCc
Confidence 3799999983 43 35898888632 1111 24556777777775321 123457
Q ss_pred CCCHHHHHHHHHHHhhccCCCeeeeeCCCCCcCHHHHHHHHHHHHh---cCCCEEEEEccCCCccc-cCCEEEEEeCCeE
Q 037346 482 NLSGGQKQRIQIARPLYQDADIFLLDDPFSPVDDHTGAHLFKFCWV---SSSKTVIYATHQVEFLP-AADLILVIKDGKI 557 (1156)
Q Consensus 482 ~LSgGqkqRi~lAral~~~~~illlDep~s~lD~~~~~~i~~~~~~---~~~~tvi~vtH~~~~~~-~~d~i~~l~~G~i 557 (1156)
+|||||||||+|||||+.+|++||+||||++||+.++.++++.+.. ..|.|+|+||||++.+. .||+|++|++|+|
T Consensus 154 ~LSgGq~QRv~iArAL~~~P~lLilDEPts~LD~~~~~~i~~lL~~l~~~~g~til~iTHdl~~~~~~adrv~vm~~G~i 233 (327)
T PRK11308 154 MFSGGQRQRIAIARALMLDPDVVVADEPVSALDVSVQAQVLNLMMDLQQELGLSYVFISHDLSVVEHIADEVMVMYLGRC 233 (327)
T ss_pred cCCHHHHHHHHHHHHHHcCCCEEEEECCCccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEE
Confidence 8999999999999999999999999999999999999999887644 34899999999999987 5999999999999
Q ss_pred EEccChHHHHhc
Q 037346 558 TQAGKYSDILNS 569 (1156)
Q Consensus 558 ~~~g~~~~l~~~ 569 (1156)
++.|+.+++.+.
T Consensus 234 ve~g~~~~~~~~ 245 (327)
T PRK11308 234 VEKGTKEQIFNN 245 (327)
T ss_pred EEECCHHHHhcC
Confidence 999999999864
|
|
| >PRK14244 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-36 Score=334.81 Aligned_cols=201 Identities=24% Similarity=0.374 Sum_probs=168.2
Q ss_pred EEEeeeEEEeCCCCCCCccccceEEeeCCeEEEEEcCCCCChHHHHHHHhCCCC-----CCCcEEEEcC-----------
Q 037346 358 IEIIDGSFSWDFSSPNPTLRNINLKVFHGMRVAVCGTVGSGKSSCLSCILGGVP-----KESGIIRLCG----------- 421 (1156)
Q Consensus 358 i~~~~~~f~~~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKSTll~~i~g~~~-----~~~G~i~~~g----------- 421 (1156)
-+++|+++.|+ ++++|+|+||+|++||+++|+|+||||||||+++|+|+++ |++|+|.++|
T Consensus 6 ~~~~~l~~~~~---~~~~l~~is~~i~~Ge~~~I~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~ 82 (251)
T PRK14244 6 ASVKNLNLWYG---SKQILFDINLDIYKREVTAFIGPSGCGKSTFLRCFNRMNDFVPNCKVKGELDIDGIDVYSVDTNVV 82 (251)
T ss_pred EEeeeEEEEEC---CeeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccCCCCCcceEEEECCEehHhcccchH
Confidence 46899999996 3579999999999999999999999999999999999986 4799999977
Q ss_pred ----eEEEEecCCcCCCccHHHHhhcCCC-----CC----HHHHHHHHHHhCCchhhhhCCCCCccccccCCCCCCHHHH
Q 037346 422 ----TKAYVAQSPWIQSGKIEENILFGKE-----MD----RERYERVLEACSLKKDLEVLPFGDQTIIGERGINLSGGQK 488 (1156)
Q Consensus 422 ----~~~~v~Q~~~~~~~ti~eni~~~~~-----~~----~~~~~~~~~~~~l~~~~~~~~~g~~t~v~~~g~~LSgGqk 488 (1156)
.++|++|++.++..|++||+.++.. .+ +++..++++..++.+.+. +.++..+.+||||||
T Consensus 83 ~~~~~i~~v~q~~~~~~~tv~~ni~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-------~~~~~~~~~LS~Gq~ 155 (251)
T PRK14244 83 LLRAKVGMVFQKPNPFPKSIYDNVAYGPKLHGLAKNKKKLDEIVEKSLTSVGLWEELG-------DRLKDSAFELSGGQQ 155 (251)
T ss_pred HHhhhEEEEecCcccccCCHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHcCCCchhh-------hHhhcChhhCCHHHH
Confidence 2689999999888899999987521 11 123345566666644221 223456779999999
Q ss_pred HHHHHHHhhccCCCeeeeeCCCCCcCHHHHHHHHHHHHh-cCCCEEEEEccCCCccc-cCCEEEEEeCCeEEEccChHHH
Q 037346 489 QRIQIARPLYQDADIFLLDDPFSPVDDHTGAHLFKFCWV-SSSKTVIYATHQVEFLP-AADLILVIKDGKITQAGKYSDI 566 (1156)
Q Consensus 489 qRi~lAral~~~~~illlDep~s~lD~~~~~~i~~~~~~-~~~~tvi~vtH~~~~~~-~~d~i~~l~~G~i~~~g~~~~l 566 (1156)
||++||||++.+|+++||||||++||+.+++.+.+.+.. .+++|+|++||+++.+. .||+|++|++|++++.|+++++
T Consensus 156 qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tiiiisH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~ 235 (251)
T PRK14244 156 QRLCIARAIAVKPTMLLMDEPCSALDPVATNVIENLIQELKKNFTIIVVTHSMKQAKKVSDRVAFFQSGRIVEYNTTQEI 235 (251)
T ss_pred HHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHhhcCEEEEEECCEEEEeCCHHHH
Confidence 999999999999999999999999999999988776543 35799999999999986 5999999999999999999887
Q ss_pred Hh
Q 037346 567 LN 568 (1156)
Q Consensus 567 ~~ 568 (1156)
..
T Consensus 236 ~~ 237 (251)
T PRK14244 236 FK 237 (251)
T ss_pred hc
Confidence 64
|
|
| >TIGR01978 sufC FeS assembly ATPase SufC | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-36 Score=333.02 Aligned_cols=197 Identities=23% Similarity=0.250 Sum_probs=163.0
Q ss_pred EEEeeeEEEeCCCCCCCccccceEEeeCCeEEEEEcCCCCChHHHHHHHhCCC--CCCCcEEEEcCe-------------
Q 037346 358 IEIIDGSFSWDFSSPNPTLRNINLKVFHGMRVAVCGTVGSGKSSCLSCILGGV--PKESGIIRLCGT------------- 422 (1156)
Q Consensus 358 i~~~~~~f~~~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKSTll~~i~g~~--~~~~G~i~~~g~------------- 422 (1156)
++++|++++|+ ++++|+|+||+|++||+++|+||||||||||+++|+|+. +|++|+|.++|.
T Consensus 1 l~~~~l~~~~~---~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~~ 77 (243)
T TIGR01978 1 LKIKDLHVSVE---DKEILKGVNLTVKKGEIHAIMGPNGSGKSTLSKTIAGHPSYEVTSGTILFKGQDLLELEPDERARA 77 (243)
T ss_pred CeEeeEEEEEC---CEEEEeccceEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCcceEEECCEecCCCCHHHhhcc
Confidence 46899999996 357999999999999999999999999999999999994 799999999873
Q ss_pred -EEEEecCCcCCCc-cHHHHhhcCCC----------CC----HHHHHHHHHHhCCchhhhhCCCCCccccccCCC-CCCH
Q 037346 423 -KAYVAQSPWIQSG-KIEENILFGKE----------MD----RERYERVLEACSLKKDLEVLPFGDQTIIGERGI-NLSG 485 (1156)
Q Consensus 423 -~~~v~Q~~~~~~~-ti~eni~~~~~----------~~----~~~~~~~~~~~~l~~~~~~~~~g~~t~v~~~g~-~LSg 485 (1156)
++|++|+|.++.. |++||+.+... .+ .++..++++.+++.... ...... +|||
T Consensus 78 ~i~~v~q~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~----------~~~~~~~~LS~ 147 (243)
T TIGR01978 78 GLFLAFQYPEEIPGVSNLEFLRSALNARRSARGEEPLDLLDFLKLLKAKLALLGMDEEF----------LNRSVNEGFSG 147 (243)
T ss_pred ceEeeeccccccCCcCHHHHHHHHHHHhhcccccccccHHHHHHHHHHHHHHcCCchhh----------cccccccCcCH
Confidence 6899999988765 89999976321 11 13345566666664322 112333 5999
Q ss_pred HHHHHHHHHHhhccCCCeeeeeCCCCCcCHHHHHHHHHHHHh--cCCCEEEEEccCCCcccc--CCEEEEEeCCeEEEcc
Q 037346 486 GQKQRIQIARPLYQDADIFLLDDPFSPVDDHTGAHLFKFCWV--SSSKTVIYATHQVEFLPA--ADLILVIKDGKITQAG 561 (1156)
Q Consensus 486 GqkqRi~lAral~~~~~illlDep~s~lD~~~~~~i~~~~~~--~~~~tvi~vtH~~~~~~~--~d~i~~l~~G~i~~~g 561 (1156)
|||||++|||||+.+|+++||||||++||+.+++.+.+.+.. .+|+|+|++||+++.+.. ||++++|++|++++.|
T Consensus 148 G~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tvi~vsH~~~~~~~~~~d~i~~l~~G~i~~~g 227 (243)
T TIGR01978 148 GEKKRNEILQMALLEPKLAILDEIDSGLDIDALKIVAEGINRLREPDRSFLIITHYQRLLNYIKPDYVHVLLDGRIVKSG 227 (243)
T ss_pred HHHHHHHHHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHCCcEEEEEEecHHHHHhhcCCeEEEEeCCEEEEec
Confidence 999999999999999999999999999999999998876644 357899999999999864 7999999999999999
Q ss_pred ChHHHH
Q 037346 562 KYSDIL 567 (1156)
Q Consensus 562 ~~~~l~ 567 (1156)
+++++.
T Consensus 228 ~~~~~~ 233 (243)
T TIGR01978 228 DVELAK 233 (243)
T ss_pred CHHHhc
Confidence 887543
|
SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PubMed:12554644) or associated with the membrane (PubMed:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA. |
| >TIGR03740 galliderm_ABC gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-36 Score=328.40 Aligned_cols=194 Identities=26% Similarity=0.318 Sum_probs=168.2
Q ss_pred EEEeeeEEEeCCCCCCCccccceEEeeCCeEEEEEcCCCCChHHHHHHHhCCCCCCCcEEEEcCe---------EEEEec
Q 037346 358 IEIIDGSFSWDFSSPNPTLRNINLKVFHGMRVAVCGTVGSGKSSCLSCILGGVPKESGIIRLCGT---------KAYVAQ 428 (1156)
Q Consensus 358 i~~~~~~f~~~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKSTll~~i~g~~~~~~G~i~~~g~---------~~~v~Q 428 (1156)
++++|++++|+ ++++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|. ++|++|
T Consensus 1 l~l~~v~~~~~---~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~~~~~~~~~~~~~~~~~q 77 (223)
T TIGR03740 1 LETKNLSKRFG---KQTAVNNISLTVPKNSVYGLLGPNGAGKSTLLKMITGILRPTSGEIIFDGHPWTRKDLHKIGSLIE 77 (223)
T ss_pred CEEEeEEEEEC---CEEEEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEeccccccccEEEEcC
Confidence 46899999996 357999999999999999999999999999999999999999999999873 689999
Q ss_pred CCcCCC-ccHHHHhhcCC---CCCHHHHHHHHHHhCCchhhhhCCCCCccccccCCCCCCHHHHHHHHHHHhhccCCCee
Q 037346 429 SPWIQS-GKIEENILFGK---EMDRERYERVLEACSLKKDLEVLPFGDQTIIGERGINLSGGQKQRIQIARPLYQDADIF 504 (1156)
Q Consensus 429 ~~~~~~-~ti~eni~~~~---~~~~~~~~~~~~~~~l~~~~~~~~~g~~t~v~~~g~~LSgGqkqRi~lAral~~~~~il 504 (1156)
++.++. .|++||+.++. ..++++..++++.+++.+..+ ....+||||||||++||||++.+|+++
T Consensus 78 ~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-----------~~~~~LS~G~~~rv~laral~~~p~ll 146 (223)
T TIGR03740 78 SPPLYENLTARENLKVHTTLLGLPDSRIDEVLNIVDLTNTGK-----------KKAKQFSLGMKQRLGIAIALLNHPKLL 146 (223)
T ss_pred CCCccccCCHHHHHHHHHHHcCCCHHHHHHHHHHcCCcHHHh-----------hhHhhCCHHHHHHHHHHHHHhcCCCEE
Confidence 998775 69999997642 234566777888888865443 344689999999999999999999999
Q ss_pred eeeCCCCCcCHHHHHHHHHHHHh--cCCCEEEEEccCCCccc-cCCEEEEEeCCeEEEccChHH
Q 037346 505 LLDDPFSPVDDHTGAHLFKFCWV--SSSKTVIYATHQVEFLP-AADLILVIKDGKITQAGKYSD 565 (1156)
Q Consensus 505 llDep~s~lD~~~~~~i~~~~~~--~~~~tvi~vtH~~~~~~-~~d~i~~l~~G~i~~~g~~~~ 565 (1156)
||||||++||+.+.+.+.+.+.. .+|+|+|++||+++.+. .||+|++|++|++++.|+.++
T Consensus 147 llDEP~~~LD~~~~~~l~~~L~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~g~i~~~~~~~~ 210 (223)
T TIGR03740 147 ILDEPTNGLDPIGIQELRELIRSFPEQGITVILSSHILSEVQQLADHIGIISEGVLGYQGKINK 210 (223)
T ss_pred EECCCccCCCHHHHHHHHHHHHHHHHCCCEEEEEcCCHHHHHHhcCEEEEEeCCEEEEecChhh
Confidence 99999999999999988776644 35789999999999985 599999999999999998754
|
Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes. |
| >cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-36 Score=327.72 Aligned_cols=186 Identities=32% Similarity=0.420 Sum_probs=158.4
Q ss_pred EEEeeeEEEeCCCCCCCccccceEEeeCCeEEEEEcCCCCChHHHHHHHhCCCCCCCcEEEEcCe---------------
Q 037346 358 IEIIDGSFSWDFSSPNPTLRNINLKVFHGMRVAVCGTVGSGKSSCLSCILGGVPKESGIIRLCGT--------------- 422 (1156)
Q Consensus 358 i~~~~~~f~~~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKSTll~~i~g~~~~~~G~i~~~g~--------------- 422 (1156)
++++|+++.|+ ++++|+++||++++|++++|+||||||||||+++|+|+++|++|+|.++|+
T Consensus 1 l~~~~l~~~~~---~~~~l~~~s~~i~~G~~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~ 77 (213)
T cd03262 1 IEIKNLHKSFG---DFHVLKGIDLTVKKGEVVVIIGPSGSGKSTLLRCINLLEEPDSGTIIIDGLKLTDDKKNINELRQK 77 (213)
T ss_pred CEEEEEEEEEC---CeEeecCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCccchhHHHHHhc
Confidence 46899999996 357999999999999999999999999999999999999999999999873
Q ss_pred EEEEecCCcCCC-ccHHHHhhcCC----CCCH----HHHHHHHHHhCCchhhhhCCCCCccccccCCCCCCHHHHHHHHH
Q 037346 423 KAYVAQSPWIQS-GKIEENILFGK----EMDR----ERYERVLEACSLKKDLEVLPFGDQTIIGERGINLSGGQKQRIQI 493 (1156)
Q Consensus 423 ~~~v~Q~~~~~~-~ti~eni~~~~----~~~~----~~~~~~~~~~~l~~~~~~~~~g~~t~v~~~g~~LSgGqkqRi~l 493 (1156)
++|++|+|.++. .|++||+.++. ..+. ++..++++.+++.+.+. ....+||||||||++|
T Consensus 78 i~~~~q~~~~~~~~t~~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-----------~~~~~LS~G~~qrv~l 146 (213)
T cd03262 78 VGMVFQQFNLFPHLTVLENITLAPIKVKGMSKAEAEERALELLEKVGLADKAD-----------AYPAQLSGGQQQRVAI 146 (213)
T ss_pred ceEEecccccCCCCcHHHHHHhHHHHhcCCCHHHHHHHHHHHHHHcCCHhHhh-----------hCccccCHHHHHHHHH
Confidence 589999998876 69999998752 1222 34455666666654433 3457899999999999
Q ss_pred HHhhccCCCeeeeeCCCCCcCHHHHHHHHHHHHh--cCCCEEEEEccCCCccc-cCCEEEEEeCCeE
Q 037346 494 ARPLYQDADIFLLDDPFSPVDDHTGAHLFKFCWV--SSSKTVIYATHQVEFLP-AADLILVIKDGKI 557 (1156)
Q Consensus 494 Aral~~~~~illlDep~s~lD~~~~~~i~~~~~~--~~~~tvi~vtH~~~~~~-~~d~i~~l~~G~i 557 (1156)
|||++.+|+++||||||++||+.+++.+.+.+.. ..|+|+|++||+++.+. .||+|++|++|++
T Consensus 147 a~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~tvi~~sh~~~~~~~~~d~i~~l~~g~i 213 (213)
T cd03262 147 ARALAMNPKVMLFDEPTSALDPELVGEVLDVMKDLAEEGMTMVVVTHEMGFAREVADRVIFMDDGRI 213 (213)
T ss_pred HHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEeCCcC
Confidence 9999999999999999999999999988876644 35789999999999986 5999999999974
|
Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM |
| >PRK09984 phosphonate/organophosphate ester transporter subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-36 Score=334.34 Aligned_cols=196 Identities=27% Similarity=0.418 Sum_probs=167.1
Q ss_pred cEEEeeeEEEeCCCCCCCccccceEEeeCCeEEEEEcCCCCChHHHHHHHhCCCCCC---CcEEEEcCe-----------
Q 037346 357 AIEIIDGSFSWDFSSPNPTLRNINLKVFHGMRVAVCGTVGSGKSSCLSCILGGVPKE---SGIIRLCGT----------- 422 (1156)
Q Consensus 357 ~i~~~~~~f~~~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKSTll~~i~g~~~~~---~G~i~~~g~----------- 422 (1156)
.++++|+++.|+ +.++|+|+||++++||+++|+||||||||||+++|+|+++|+ +|+|.++|.
T Consensus 4 ~l~~~nl~~~~~---~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~p~~~~~G~i~~~g~~~~~~~~~~~~ 80 (262)
T PRK09984 4 IIRVEKLAKTFN---QHQALHAVDLNIHHGEMVALLGPSGSGKSTLLRHLSGLITGDKSAGSHIELLGRTVQREGRLARD 80 (262)
T ss_pred EEEEeeEEEEeC---CeEEEecceEEEcCCcEEEEECCCCCCHHHHHHHHhccCCCCCCCceEEEECCEecccccccchh
Confidence 589999999996 357999999999999999999999999999999999999986 499998872
Q ss_pred -------EEEEecCCcCCC-ccHHHHhhcCCC------------CC---HHHHHHHHHHhCCchhhhhCCCCCccccccC
Q 037346 423 -------KAYVAQSPWIQS-GKIEENILFGKE------------MD---RERYERVLEACSLKKDLEVLPFGDQTIIGER 479 (1156)
Q Consensus 423 -------~~~v~Q~~~~~~-~ti~eni~~~~~------------~~---~~~~~~~~~~~~l~~~~~~~~~g~~t~v~~~ 479 (1156)
++|++|++.++. .|++||+.++.. .. .++.+++++..++.+.+ ...
T Consensus 81 ~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-----------~~~ 149 (262)
T PRK09984 81 IRKSRANTGYIFQQFNLVNRLSVLENVLIGALGSTPFWRTCFSWFTREQKQRALQALTRVGMVHFA-----------HQR 149 (262)
T ss_pred HHHHHhheEEEccccccccCCcHHHHHHhhhcccccchhhhcccccHHHHHHHHHHHHHcCCHHHH-----------hCC
Confidence 589999998776 599999987531 01 23455666666665433 345
Q ss_pred CCCCCHHHHHHHHHHHhhccCCCeeeeeCCCCCcCHHHHHHHHHHHHh---cCCCEEEEEccCCCccc-cCCEEEEEeCC
Q 037346 480 GINLSGGQKQRIQIARPLYQDADIFLLDDPFSPVDDHTGAHLFKFCWV---SSSKTVIYATHQVEFLP-AADLILVIKDG 555 (1156)
Q Consensus 480 g~~LSgGqkqRi~lAral~~~~~illlDep~s~lD~~~~~~i~~~~~~---~~~~tvi~vtH~~~~~~-~~d~i~~l~~G 555 (1156)
..+||||||||++||||++.+|+++||||||++||+.+.+.+.+.+.. ..|+|+|++||+++.+. .||+|++|++|
T Consensus 150 ~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~g~tvii~tH~~~~~~~~~d~i~~l~~g 229 (262)
T PRK09984 150 VSTLSGGQQQRVAIARALMQQAKVILADEPIASLDPESARIVMDTLRDINQNDGITVVVTLHQVDYALRYCERIVALRQG 229 (262)
T ss_pred ccccCHHHHHHHHHHHHHhcCCCEEEecCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECC
Confidence 578999999999999999999999999999999999999988876644 24799999999999865 59999999999
Q ss_pred eEEEccChHHH
Q 037346 556 KITQAGKYSDI 566 (1156)
Q Consensus 556 ~i~~~g~~~~l 566 (1156)
++.+.|+++++
T Consensus 230 ~i~~~g~~~~~ 240 (262)
T PRK09984 230 HVFYDGSSQQF 240 (262)
T ss_pred EEEEeCCHHHh
Confidence 99999999886
|
|
| >PRK11144 modC molybdate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-36 Score=346.97 Aligned_cols=196 Identities=24% Similarity=0.393 Sum_probs=168.9
Q ss_pred EEEeeeEEEeCCCCCCCccccceEEeeCCeEEEEEcCCCCChHHHHHHHhCCCCCCCcEEEEcC----------------
Q 037346 358 IEIIDGSFSWDFSSPNPTLRNINLKVFHGMRVAVCGTVGSGKSSCLSCILGGVPKESGIIRLCG---------------- 421 (1156)
Q Consensus 358 i~~~~~~f~~~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKSTll~~i~g~~~~~~G~i~~~g---------------- 421 (1156)
+++ |++++|+. . .+ |+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|
T Consensus 2 l~~-~l~k~~~~---~-~~-~vsl~i~~Ge~~~l~G~nGsGKSTLl~~iaGl~~p~~G~I~~~g~~~~~~~~~~~~~~~~ 75 (352)
T PRK11144 2 LEL-NFKQQLGD---L-CL-TVNLTLPAQGITAIFGRSGAGKTSLINAISGLTRPQKGRIVLNGRVLFDAEKGICLPPEK 75 (352)
T ss_pred eEE-EEEEEeCC---E-EE-EEEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccccccccchhh
Confidence 566 89999962 2 23 89999999999999999999999999999999999999999876
Q ss_pred -eEEEEecCCcCCC-ccHHHHhhcCCC-CCHHHHHHHHHHhCCchhhhhCCCCCccccccCCCCCCHHHHHHHHHHHhhc
Q 037346 422 -TKAYVAQSPWIQS-GKIEENILFGKE-MDRERYERVLEACSLKKDLEVLPFGDQTIIGERGINLSGGQKQRIQIARPLY 498 (1156)
Q Consensus 422 -~~~~v~Q~~~~~~-~ti~eni~~~~~-~~~~~~~~~~~~~~l~~~~~~~~~g~~t~v~~~g~~LSgGqkqRi~lAral~ 498 (1156)
.++|++|++.+|. .|++||+.|+.. ...++.+++++.+++.+.++. ...+||||||||++|||||+
T Consensus 76 ~~i~~v~q~~~l~~~~tv~enl~~~~~~~~~~~~~~~l~~~gl~~~~~~-----------~~~~LSgGq~qRvalaraL~ 144 (352)
T PRK11144 76 RRIGYVFQDARLFPHYKVRGNLRYGMAKSMVAQFDKIVALLGIEPLLDR-----------YPGSLSGGEKQRVAIGRALL 144 (352)
T ss_pred CCEEEEcCCcccCCCCcHHHHHHhhhhhhhHHHHHHHHHHcCCchhhhC-----------CcccCCHHHHHHHHHHHHHH
Confidence 2689999999886 599999998743 334567788888888655543 44689999999999999999
Q ss_pred cCCCeeeeeCCCCCcCHHHHHHHHHHHHh---cCCCEEEEEccCCCccc-cCCEEEEEeCCeEEEccChHHHHhcC
Q 037346 499 QDADIFLLDDPFSPVDDHTGAHLFKFCWV---SSSKTVIYATHQVEFLP-AADLILVIKDGKITQAGKYSDILNSG 570 (1156)
Q Consensus 499 ~~~~illlDep~s~lD~~~~~~i~~~~~~---~~~~tvi~vtH~~~~~~-~~d~i~~l~~G~i~~~g~~~~l~~~~ 570 (1156)
.+|+++||||||++||+.+++.+.+.+.. ..|+|+|+|||+++.+. .||+|++|++|++++.|+++++....
T Consensus 145 ~~p~llLLDEPts~LD~~~~~~l~~~L~~l~~~~g~tii~vTHd~~~~~~~~d~i~~l~~G~i~~~g~~~~i~~~p 220 (352)
T PRK11144 145 TAPELLLMDEPLASLDLPRKRELLPYLERLAREINIPILYVSHSLDEILRLADRVVVLEQGKVKAFGPLEEVWASS 220 (352)
T ss_pred cCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCeEEEEecCHHHHHHhCCEEEEEeCCEEEEecCHHHHHhCc
Confidence 99999999999999999999988876643 23789999999998875 59999999999999999999987653
|
|
| >cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE) | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.3e-36 Score=327.49 Aligned_cols=194 Identities=27% Similarity=0.397 Sum_probs=158.0
Q ss_pred EEEeeeEEEeCCCC-CCCccccceEEeeCCeEEEEEcCCCCChHHHHHHHhCCCCCCCcEEEEcC---------------
Q 037346 358 IEIIDGSFSWDFSS-PNPTLRNINLKVFHGMRVAVCGTVGSGKSSCLSCILGGVPKESGIIRLCG--------------- 421 (1156)
Q Consensus 358 i~~~~~~f~~~~~~-~~~~l~~i~l~i~~g~~~~ivG~~GsGKSTll~~i~g~~~~~~G~i~~~g--------------- 421 (1156)
++++|+++.|+... +.++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|
T Consensus 2 l~~~~v~~~~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 81 (228)
T cd03257 2 LEVKNLSVSFPTGGGSVKALDDVSFSIKKGETLGLVGESGSGKSTLARAILGLLKPTSGSIIFDGKDLLKLSRRLRKIRR 81 (228)
T ss_pred eEEEeeeEeccCCCcceeeecCceeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEccccchhhHHHhh
Confidence 68999999996321 12699999999999999999999999999999999999999999999987
Q ss_pred -eEEEEecCCc--CC-CccHHHHhhcCC-----CCCHHHH----HHHHHHhCCchhhhhCCCCCccccccCCCCCCHHHH
Q 037346 422 -TKAYVAQSPW--IQ-SGKIEENILFGK-----EMDRERY----ERVLEACSLKKDLEVLPFGDQTIIGERGINLSGGQK 488 (1156)
Q Consensus 422 -~~~~v~Q~~~--~~-~~ti~eni~~~~-----~~~~~~~----~~~~~~~~l~~~~~~~~~g~~t~v~~~g~~LSgGqk 488 (1156)
.++|++|+|. ++ ..|++||+.++. ...++.. ++.++.+++.. ........+||||||
T Consensus 82 ~~i~~~~q~~~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~----------~~~~~~~~~LS~G~~ 151 (228)
T cd03257 82 KEIQMVFQDPMSSLNPRMTIGEQIAEPLRIHGKLSKKEARKEAVLLLLVGVGLPE----------EVLNRYPHELSGGQR 151 (228)
T ss_pred ccEEEEecCchhhcCCcCCHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHCCCCh----------hHhhCCchhcCHHHH
Confidence 2689999993 33 579999997642 1111111 23445555421 123455678999999
Q ss_pred HHHHHHHhhccCCCeeeeeCCCCCcCHHHHHHHHHHHHh--cC-CCEEEEEccCCCccc-cCCEEEEEeCCeEEEcc
Q 037346 489 QRIQIARPLYQDADIFLLDDPFSPVDDHTGAHLFKFCWV--SS-SKTVIYATHQVEFLP-AADLILVIKDGKITQAG 561 (1156)
Q Consensus 489 qRi~lAral~~~~~illlDep~s~lD~~~~~~i~~~~~~--~~-~~tvi~vtH~~~~~~-~~d~i~~l~~G~i~~~g 561 (1156)
||++||||++.+|+++||||||++||+.+++.+.+.+.. .+ |+|+|++||+++.+. .||+|++|++|++++.|
T Consensus 152 qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~g 228 (228)
T cd03257 152 QRVAIARALALNPKLLIADEPTSALDVSVQAQILDLLKKLQEELGLTLLFITHDLGVVAKIADRVAVMYAGKIVEEG 228 (228)
T ss_pred HHHHHHHHHhcCCCEEEecCCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCeEEEEeCCEEEecC
Confidence 999999999999999999999999999999988876644 23 789999999999887 59999999999998754
|
The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF. |
| >PRK14262 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-36 Score=333.30 Aligned_cols=202 Identities=28% Similarity=0.394 Sum_probs=169.6
Q ss_pred cEEEeeeEEEeCCCCCCCccccceEEeeCCeEEEEEcCCCCChHHHHHHHhCCCCC-----CCcEEEEcC----------
Q 037346 357 AIEIIDGSFSWDFSSPNPTLRNINLKVFHGMRVAVCGTVGSGKSSCLSCILGGVPK-----ESGIIRLCG---------- 421 (1156)
Q Consensus 357 ~i~~~~~~f~~~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKSTll~~i~g~~~~-----~~G~i~~~g---------- 421 (1156)
.++++|+++.|+ ++++|+|+||++++||+++|+||||||||||+++|+|+++| ++|+|.++|
T Consensus 3 ~l~~~~l~~~~~---~~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~i~g~~~~~~~~~~ 79 (250)
T PRK14262 3 IIEIENFSAYYG---EKKAVKNVTMKIFKNQITAIIGPSGCGKTTLLRSINRMNDHIPGFRVEGKIYFKGQDIYDPQLDV 79 (250)
T ss_pred eEEEEeeEEEeC---CceeEeeeeEeecCCCEEEEECCCCCCHHHHHHHHhccccCCCCCCcceEEEECCEEcccchhhH
Confidence 489999999996 35799999999999999999999999999999999999874 899999887
Q ss_pred -----eEEEEecCCcCCCccHHHHhhcCCC----CCH----HHHHHHHHHhCCchhhhhCCCCCccccccCCCCCCHHHH
Q 037346 422 -----TKAYVAQSPWIQSGKIEENILFGKE----MDR----ERYERVLEACSLKKDLEVLPFGDQTIIGERGINLSGGQK 488 (1156)
Q Consensus 422 -----~~~~v~Q~~~~~~~ti~eni~~~~~----~~~----~~~~~~~~~~~l~~~~~~~~~g~~t~v~~~g~~LSgGqk 488 (1156)
.++|++|+|.++..|++||+.++.. ... ++.++.++..++...+. ...++.+.+||||||
T Consensus 80 ~~~~~~i~~~~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-------~~~~~~~~~LS~Gq~ 152 (250)
T PRK14262 80 TEYRKKVGMVFQKPTPFPMSIYDNVAFGPRIHGVKSKHKLDRIVEESLKKAALWDEVK-------SELNKPGTRLSGGQQ 152 (250)
T ss_pred HHhhhhEEEEecCCccCcccHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHcCCCchhH-------HHHhCChhhcCHHHH
Confidence 2789999999888999999987521 111 22344555556643322 223566789999999
Q ss_pred HHHHHHHhhccCCCeeeeeCCCCCcCHHHHHHHHHHHHh-cCCCEEEEEccCCCccc-cCCEEEEEeCCeEEEccChHHH
Q 037346 489 QRIQIARPLYQDADIFLLDDPFSPVDDHTGAHLFKFCWV-SSSKTVIYATHQVEFLP-AADLILVIKDGKITQAGKYSDI 566 (1156)
Q Consensus 489 qRi~lAral~~~~~illlDep~s~lD~~~~~~i~~~~~~-~~~~tvi~vtH~~~~~~-~~d~i~~l~~G~i~~~g~~~~l 566 (1156)
||++||||++.+|+++||||||++||+.++..+.+.+.. .+++|+|++||+++.+. .||++++|++|++++.|+++++
T Consensus 153 qr~~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tili~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~ 232 (250)
T PRK14262 153 QRLCIARALAVEPEVILLDEPTSALDPIATQRIEKLLEELSENYTIVIVTHNIGQAIRIADYIAFMYRGELIEYGPTREI 232 (250)
T ss_pred HHHHHHHHHhCCCCEEEEeCCccccCHHHHHHHHHHHHHHhcCcEEEEEeCCHHHHHHhCCEEEEEECCEEEEecCHHHH
Confidence 999999999999999999999999999999988776644 34689999999999765 5999999999999999999887
Q ss_pred Hh
Q 037346 567 LN 568 (1156)
Q Consensus 567 ~~ 568 (1156)
.+
T Consensus 233 ~~ 234 (250)
T PRK14262 233 VE 234 (250)
T ss_pred Hh
Confidence 64
|
|
| >PRK14253 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.9e-36 Score=332.03 Aligned_cols=202 Identities=25% Similarity=0.362 Sum_probs=169.3
Q ss_pred cEEEeeeEEEeCCCCCCCccccceEEeeCCeEEEEEcCCCCChHHHHHHHhCCCCC-----CCcEEEEcCe---------
Q 037346 357 AIEIIDGSFSWDFSSPNPTLRNINLKVFHGMRVAVCGTVGSGKSSCLSCILGGVPK-----ESGIIRLCGT--------- 422 (1156)
Q Consensus 357 ~i~~~~~~f~~~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKSTll~~i~g~~~~-----~~G~i~~~g~--------- 422 (1156)
.++++|+++.|+ ++++|+|+||+|++||+++|+||||||||||+++|+|.++| ++|+|.++|.
T Consensus 3 ~l~~~~l~~~~~---~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~~~~~~~~~ 79 (249)
T PRK14253 3 KFNIENLDLFYG---ENQALKSINLPIPARQVTALIGPSGCGKSTLLRCLNRMNDLIEGVKITGKLTMDGEDIYGNIDVA 79 (249)
T ss_pred eEEEeccEEEEC---CeeeeecceEEecCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCceEEEECCEEcccccchH
Confidence 488999999996 35799999999999999999999999999999999999986 5999999872
Q ss_pred -----EEEEecCCcCCCccHHHHhhcCCC---C-CH----HHHHHHHHHhCCchhhhhCCCCCccccccCCCCCCHHHHH
Q 037346 423 -----KAYVAQSPWIQSGKIEENILFGKE---M-DR----ERYERVLEACSLKKDLEVLPFGDQTIIGERGINLSGGQKQ 489 (1156)
Q Consensus 423 -----~~~v~Q~~~~~~~ti~eni~~~~~---~-~~----~~~~~~~~~~~l~~~~~~~~~g~~t~v~~~g~~LSgGqkq 489 (1156)
++|++|+|.++..|++||+.++.. . .+ ++..+.++..++.+++. ......+.+|||||||
T Consensus 80 ~~~~~i~~~~q~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-------~~~~~~~~~LS~G~~q 152 (249)
T PRK14253 80 DLRIKVGMVFQKPNPFPMSIYENVAYGLRAQGIKDKKVLDEVVERSLRGAALWDEVK-------DRLKSHAFGLSGGQQQ 152 (249)
T ss_pred HHHhheeEEecCCCcCcccHHHHHHhHHHhcCCCchHHHHHHHHHHHHHcCCchhhh-------HHhhcCcccCCHHHHH
Confidence 689999999888999999987532 1 11 23344555556544332 2334567799999999
Q ss_pred HHHHHHhhccCCCeeeeeCCCCCcCHHHHHHHHHHHHh-cCCCEEEEEccCCCcccc-CCEEEEEeCCeEEEccChHHHH
Q 037346 490 RIQIARPLYQDADIFLLDDPFSPVDDHTGAHLFKFCWV-SSSKTVIYATHQVEFLPA-ADLILVIKDGKITQAGKYSDIL 567 (1156)
Q Consensus 490 Ri~lAral~~~~~illlDep~s~lD~~~~~~i~~~~~~-~~~~tvi~vtH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~ 567 (1156)
|++||||++.+|+++||||||++||+.+...+.+.+.. .+++|+|++||+++.+.. ||++++|++|++++.|+.+++.
T Consensus 153 rv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~ 232 (249)
T PRK14253 153 RLCIARTIAMEPDVILMDEPTSALDPIATHKIEELMEELKKNYTIVIVTHSMQQARRISDRTAFFLMGELVEHDDTQVIF 232 (249)
T ss_pred HHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEecCHHHHHHhCCEEEEEECCEEEEeCCHHHHH
Confidence 99999999999999999999999999999988876644 346899999999998765 9999999999999999988775
Q ss_pred h
Q 037346 568 N 568 (1156)
Q Consensus 568 ~ 568 (1156)
.
T Consensus 233 ~ 233 (249)
T PRK14253 233 S 233 (249)
T ss_pred c
Confidence 3
|
|
| >PRK11022 dppD dipeptide transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.9e-36 Score=342.10 Aligned_cols=206 Identities=22% Similarity=0.319 Sum_probs=168.8
Q ss_pred cEEEeeeEEEeCCCCC-CCccccceEEeeCCeEEEEEcCCCCChHHHHHHHhCCCC----CCCcEEEEcCe---------
Q 037346 357 AIEIIDGSFSWDFSSP-NPTLRNINLKVFHGMRVAVCGTVGSGKSSCLSCILGGVP----KESGIIRLCGT--------- 422 (1156)
Q Consensus 357 ~i~~~~~~f~~~~~~~-~~~l~~i~l~i~~g~~~~ivG~~GsGKSTll~~i~g~~~----~~~G~i~~~g~--------- 422 (1156)
.++++|+++.|+.... ..+|+|+||+|++||+++|+|+||||||||+++|+|+++ |++|+|.++|.
T Consensus 3 ~L~v~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~lvG~sGsGKSTL~~~l~Gll~~~~~~~~G~i~~~G~~i~~~~~~~ 82 (326)
T PRK11022 3 LLNVDKLSVHFGDESAPFRAVDRISYSVKQGEVVGIVGESGSGKSVSSLAIMGLIDYPGRVMAEKLEFNGQDLQRISEKE 82 (326)
T ss_pred eEEEeCeEEEECCCCccEEEEeeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCCCCcceEEEECCEECCcCCHHH
Confidence 4799999999974222 369999999999999999999999999999999999997 48999999883
Q ss_pred --------EEEEecCCc--CC-CccHHHHhhc----CCCC----CHHHHHHHHHHhCCchhhhhCCCCCccccccCCCCC
Q 037346 423 --------KAYVAQSPW--IQ-SGKIEENILF----GKEM----DRERYERVLEACSLKKDLEVLPFGDQTIIGERGINL 483 (1156)
Q Consensus 423 --------~~~v~Q~~~--~~-~~ti~eni~~----~~~~----~~~~~~~~~~~~~l~~~~~~~~~g~~t~v~~~g~~L 483 (1156)
++|++|+|. +. ..|+.+++.. .... ..++..+.++..+|.+.. ...+..+.+|
T Consensus 83 ~~~~r~~~i~~v~Q~~~~~l~p~~~v~~~i~~~l~~~~~~~~~~~~~~~~~~L~~~gL~~~~--------~~l~~~p~~L 154 (326)
T PRK11022 83 RRNLVGAEVAMIFQDPMTSLNPCYTVGFQIMEAIKVHQGGNKKTRRQRAIDLLNQVGIPDPA--------SRLDVYPHQL 154 (326)
T ss_pred HHHHhCCCEEEEecCchhhcCCcCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHCCCCChH--------HHHhCCchhC
Confidence 799999985 32 3467666542 1111 234566777777775321 1124566799
Q ss_pred CHHHHHHHHHHHhhccCCCeeeeeCCCCCcCHHHHHHHHHHHHh---cCCCEEEEEccCCCccc-cCCEEEEEeCCeEEE
Q 037346 484 SGGQKQRIQIARPLYQDADIFLLDDPFSPVDDHTGAHLFKFCWV---SSSKTVIYATHQVEFLP-AADLILVIKDGKITQ 559 (1156)
Q Consensus 484 SgGqkqRi~lAral~~~~~illlDep~s~lD~~~~~~i~~~~~~---~~~~tvi~vtH~~~~~~-~~d~i~~l~~G~i~~ 559 (1156)
||||||||+|||||+.+|+++|+||||++||+.++..+.+.+.. ..|.|+|+|||+++.+. .||+|++|.+|+|++
T Consensus 155 SgGq~QRv~iArAL~~~P~llilDEPts~LD~~~~~~il~lL~~l~~~~g~til~iTHdl~~~~~~adri~vm~~G~ive 234 (326)
T PRK11022 155 SGGMSQRVMIAMAIACRPKLLIADEPTTALDVTIQAQIIELLLELQQKENMALVLITHDLALVAEAAHKIIVMYAGQVVE 234 (326)
T ss_pred CHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEE
Confidence 99999999999999999999999999999999999999886644 35889999999999985 599999999999999
Q ss_pred ccChHHHHhcC
Q 037346 560 AGKYSDILNSG 570 (1156)
Q Consensus 560 ~g~~~~l~~~~ 570 (1156)
.|+.+++.+..
T Consensus 235 ~g~~~~~~~~p 245 (326)
T PRK11022 235 TGKAHDIFRAP 245 (326)
T ss_pred ECCHHHHhhCC
Confidence 99999998653
|
|
| >PRK09544 znuC high-affinity zinc transporter ATPase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=5e-36 Score=329.69 Aligned_cols=197 Identities=21% Similarity=0.354 Sum_probs=171.0
Q ss_pred cEEEeeeEEEeCCCCCCCccccceEEeeCCeEEEEEcCCCCChHHHHHHHhCCCCCCCcEEEEcC--eEEEEecCCcCCC
Q 037346 357 AIEIIDGSFSWDFSSPNPTLRNINLKVFHGMRVAVCGTVGSGKSSCLSCILGGVPKESGIIRLCG--TKAYVAQSPWIQS 434 (1156)
Q Consensus 357 ~i~~~~~~f~~~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKSTll~~i~g~~~~~~G~i~~~g--~~~~v~Q~~~~~~ 434 (1156)
.++++|+++.|+ ++++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++| .++|++|++.++.
T Consensus 4 ~l~~~~l~~~~~---~~~vl~~vs~~i~~Ge~~~I~G~NGsGKSTLl~~i~Gl~~p~~G~i~~~~~~~i~~v~q~~~~~~ 80 (251)
T PRK09544 4 LVSLENVSVSFG---QRRVLSDVSLELKPGKILTLLGPNGAGKSTLVRVVLGLVAPDEGVIKRNGKLRIGYVPQKLYLDT 80 (251)
T ss_pred EEEEeceEEEEC---CceEEEeEEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCccCEEEecccccccc
Confidence 589999999996 35799999999999999999999999999999999999999999999987 5899999987654
Q ss_pred ---ccHHHHhhcCCCCCHHHHHHHHHHhCCchhhhhCCCCCccccccCCCCCCHHHHHHHHHHHhhccCCCeeeeeCCCC
Q 037346 435 ---GKIEENILFGKEMDRERYERVLEACSLKKDLEVLPFGDQTIIGERGINLSGGQKQRIQIARPLYQDADIFLLDDPFS 511 (1156)
Q Consensus 435 ---~ti~eni~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~t~v~~~g~~LSgGqkqRi~lAral~~~~~illlDep~s 511 (1156)
.|+++|+.+.....+++..++++.+++.+.++ ....+||||||||++||||++.+|+++||||||+
T Consensus 81 ~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~-----------~~~~~LSgGq~qrv~laral~~~p~lllLDEPt~ 149 (251)
T PRK09544 81 TLPLTVNRFLRLRPGTKKEDILPALKRVQAGHLID-----------APMQKLSGGETQRVLLARALLNRPQLLVLDEPTQ 149 (251)
T ss_pred ccChhHHHHHhccccccHHHHHHHHHHcCChHHHh-----------CChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCc
Confidence 48999987654445567788888888865543 3456899999999999999999999999999999
Q ss_pred CcCHHHHHHHHHHHHh--c-CCCEEEEEccCCCccc-cCCEEEEEeCCeEEEccChHHHHh
Q 037346 512 PVDDHTGAHLFKFCWV--S-SSKTVIYATHQVEFLP-AADLILVIKDGKITQAGKYSDILN 568 (1156)
Q Consensus 512 ~lD~~~~~~i~~~~~~--~-~~~tvi~vtH~~~~~~-~~d~i~~l~~G~i~~~g~~~~l~~ 568 (1156)
+||+.++..+.+.+.. . .++|+|++||+++.+. .||+|++|++ ++++.|+++++.+
T Consensus 150 ~LD~~~~~~l~~~L~~~~~~~g~tiiivsH~~~~i~~~~d~i~~l~~-~i~~~g~~~~~~~ 209 (251)
T PRK09544 150 GVDVNGQVALYDLIDQLRRELDCAVLMVSHDLHLVMAKTDEVLCLNH-HICCSGTPEVVSL 209 (251)
T ss_pred CCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEECC-ceEeeCCHHHHhC
Confidence 9999999988876643 2 3789999999999985 5999999965 7999999988764
|
|
| >PRK14256 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.8e-36 Score=331.77 Aligned_cols=204 Identities=23% Similarity=0.328 Sum_probs=170.1
Q ss_pred ccEEEeeeEEEeCCCCCCCccccceEEeeCCeEEEEEcCCCCChHHHHHHHhCCCC--C---CCcEEEEcCe--------
Q 037346 356 TAIEIIDGSFSWDFSSPNPTLRNINLKVFHGMRVAVCGTVGSGKSSCLSCILGGVP--K---ESGIIRLCGT-------- 422 (1156)
Q Consensus 356 ~~i~~~~~~f~~~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKSTll~~i~g~~~--~---~~G~i~~~g~-------- 422 (1156)
+.++++|+++.|+ ++++|+|+||+|++||+++|+|+||||||||+++|+|+++ | ++|+|.++|.
T Consensus 3 ~~l~~~nl~~~~~---~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~i~~~~~~ 79 (252)
T PRK14256 3 NKVKLEQLNVHFG---KNHAVKDVSMDFPENSVTAIIGPSGCGKSTVLRSINRMHDLVPSARVTGKILLDDTDIYDRGVD 79 (252)
T ss_pred cEEEEEEEEEEeC---CeeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHHhcccCCCCCCCceEEEECCEEcccccCC
Confidence 4589999999996 3579999999999999999999999999999999999986 4 6899999872
Q ss_pred -------EEEEecCCcCCC-ccHHHHhhcCCC----CC----HHHHHHHHHHhCCchhhhhCCCCCccccccCCCCCCHH
Q 037346 423 -------KAYVAQSPWIQS-GKIEENILFGKE----MD----RERYERVLEACSLKKDLEVLPFGDQTIIGERGINLSGG 486 (1156)
Q Consensus 423 -------~~~v~Q~~~~~~-~ti~eni~~~~~----~~----~~~~~~~~~~~~l~~~~~~~~~g~~t~v~~~g~~LSgG 486 (1156)
++|++|++.++. .|++||+.++.. .+ +++..+.++.+++...+.. ..+..+.+||||
T Consensus 80 ~~~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-------~~~~~~~~LS~G 152 (252)
T PRK14256 80 PVSIRRRVGMVFQKPNPFPAMSIYDNVIAGYKLNGRVNRSEADEIVESSLKRVALWDEVKD-------RLKSNAMELSGG 152 (252)
T ss_pred hHHhhccEEEEecCCCCCCcCcHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCchhhhH-------HhhCCcCcCCHH
Confidence 689999998887 599999986421 12 2344566667776543321 123456789999
Q ss_pred HHHHHHHHHhhccCCCeeeeeCCCCCcCHHHHHHHHHHHHh-cCCCEEEEEccCCCccc-cCCEEEEEeCCeEEEccChH
Q 037346 487 QKQRIQIARPLYQDADIFLLDDPFSPVDDHTGAHLFKFCWV-SSSKTVIYATHQVEFLP-AADLILVIKDGKITQAGKYS 564 (1156)
Q Consensus 487 qkqRi~lAral~~~~~illlDep~s~lD~~~~~~i~~~~~~-~~~~tvi~vtH~~~~~~-~~d~i~~l~~G~i~~~g~~~ 564 (1156)
||||++||||++.+|+++||||||++||+.+++.+.+.+.. .+++|+|++||+++.+. .||++++|++|++++.|+++
T Consensus 153 ~~qrl~laral~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~~~~~ 232 (252)
T PRK14256 153 QQQRLCIARTIAVKPEVILMDEPASALDPISTLKIEELIEELKEKYTIIIVTHNMQQAARVSDYTAFFYMGDLVECGETK 232 (252)
T ss_pred HHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhCCcEEEEECCHHHHHhhCCEEEEEECCEEEEeCCHH
Confidence 99999999999999999999999999999999988776543 34689999999999885 59999999999999999998
Q ss_pred HHHhc
Q 037346 565 DILNS 569 (1156)
Q Consensus 565 ~l~~~ 569 (1156)
++...
T Consensus 233 ~~~~~ 237 (252)
T PRK14256 233 KIFTT 237 (252)
T ss_pred HHHhC
Confidence 87643
|
|
| >TIGR01277 thiQ thiamine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.5e-36 Score=323.24 Aligned_cols=189 Identities=26% Similarity=0.393 Sum_probs=161.7
Q ss_pred EEEeeeEEEeCCCCCCCccccceEEeeCCeEEEEEcCCCCChHHHHHHHhCCCCCCCcEEEEcCe-----------EEEE
Q 037346 358 IEIIDGSFSWDFSSPNPTLRNINLKVFHGMRVAVCGTVGSGKSSCLSCILGGVPKESGIIRLCGT-----------KAYV 426 (1156)
Q Consensus 358 i~~~~~~f~~~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKSTll~~i~g~~~~~~G~i~~~g~-----------~~~v 426 (1156)
++++|+++.|+ . .++|+||++++|++++|+||||||||||+++|+|+++|++|+|.++|. ++|+
T Consensus 1 ~~~~~l~~~~~---~--~~~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~i~~v 75 (213)
T TIGR01277 1 LALDKVRYEYE---H--LPMEFDLNVADGEIVAIMGPSGAGKSTLLNLIAGFIEPASGSIKVNDQSHTGLAPYQRPVSML 75 (213)
T ss_pred CeEEeeeEEeC---C--cceeeEEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEcccCChhccceEEE
Confidence 36899999995 1 468999999999999999999999999999999999999999999883 6899
Q ss_pred ecCCcCCC-ccHHHHhhcCC--CC-----CHHHHHHHHHHhCCchhhhhCCCCCccccccCCCCCCHHHHHHHHHHHhhc
Q 037346 427 AQSPWIQS-GKIEENILFGK--EM-----DRERYERVLEACSLKKDLEVLPFGDQTIIGERGINLSGGQKQRIQIARPLY 498 (1156)
Q Consensus 427 ~Q~~~~~~-~ti~eni~~~~--~~-----~~~~~~~~~~~~~l~~~~~~~~~g~~t~v~~~g~~LSgGqkqRi~lAral~ 498 (1156)
+|+|.++. .|++||+.++. .. ++++.+++++.+++.+..... ..+||||||||++||||++
T Consensus 76 ~q~~~~~~~~t~~en~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-----------~~~LS~G~~qrl~laral~ 144 (213)
T TIGR01277 76 FQENNLFAHLTVRQNIGLGLHPGLKLNAEQQEKVVDAAQQVGIADYLDRL-----------PEQLSGGQRQRVALARCLV 144 (213)
T ss_pred eccCccCCCCcHHHHHHhHhhccCCccHHHHHHHHHHHHHcCcHHHhhCC-----------cccCCHHHHHHHHHHHHHh
Confidence 99998886 59999998642 11 234566678888886554433 3589999999999999999
Q ss_pred cCCCeeeeeCCCCCcCHHHHHHHHHHHHh---cCCCEEEEEccCCCccc-cCCEEEEEeCCeEEEccC
Q 037346 499 QDADIFLLDDPFSPVDDHTGAHLFKFCWV---SSSKTVIYATHQVEFLP-AADLILVIKDGKITQAGK 562 (1156)
Q Consensus 499 ~~~~illlDep~s~lD~~~~~~i~~~~~~---~~~~tvi~vtH~~~~~~-~~d~i~~l~~G~i~~~g~ 562 (1156)
.+|+++||||||++||+.+++.+.+.+.. ..+.|+|++||+++.+. .||++++|++|++.+.|.
T Consensus 145 ~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~~tii~vsh~~~~~~~~~d~v~~l~~g~i~~~~~ 212 (213)
T TIGR01277 145 RPNPILLLDEPFSALDPLLREEMLALVKQLCSERQRTLLMVTHHLSDARAIASQIAVVSQGKIKVVSD 212 (213)
T ss_pred cCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhhcCeEEEEECCeEEEecC
Confidence 99999999999999999999988876644 24789999999999876 599999999999998764
|
This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found. |
| >cd03300 ABC_PotA_N PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-36 Score=328.95 Aligned_cols=197 Identities=29% Similarity=0.363 Sum_probs=169.5
Q ss_pred EEEeeeEEEeCCCCCCCccccceEEeeCCeEEEEEcCCCCChHHHHHHHhCCCCCCCcEEEEcCe-----------EEEE
Q 037346 358 IEIIDGSFSWDFSSPNPTLRNINLKVFHGMRVAVCGTVGSGKSSCLSCILGGVPKESGIIRLCGT-----------KAYV 426 (1156)
Q Consensus 358 i~~~~~~f~~~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKSTll~~i~g~~~~~~G~i~~~g~-----------~~~v 426 (1156)
|+++|++++|+ ++++++|+||++++|++++|+|+||||||||+++|+|+++|++|+|.++|. ++|+
T Consensus 1 l~~~~l~~~~~---~~~il~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~i~~~ 77 (232)
T cd03300 1 IELENVSKFYG---GFVALDGVSLDIKEGEFFTLLGPSGCGKTTLLRLIAGFETPTSGEILLDGKDITNLPPHKRPVNTV 77 (232)
T ss_pred CEEEeEEEEeC---CeeeeccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcCcCChhhcceEEE
Confidence 46899999996 347999999999999999999999999999999999999999999999873 6999
Q ss_pred ecCCcCCCc-cHHHHhhcCCC---CC----HHHHHHHHHHhCCchhhhhCCCCCccccccCCCCCCHHHHHHHHHHHhhc
Q 037346 427 AQSPWIQSG-KIEENILFGKE---MD----RERYERVLEACSLKKDLEVLPFGDQTIIGERGINLSGGQKQRIQIARPLY 498 (1156)
Q Consensus 427 ~Q~~~~~~~-ti~eni~~~~~---~~----~~~~~~~~~~~~l~~~~~~~~~g~~t~v~~~g~~LSgGqkqRi~lAral~ 498 (1156)
+|++.++.+ |++||+.++.. .+ +++++++++..++.+.+.. ...+||||||||++||||++
T Consensus 78 ~q~~~~~~~~t~~~nl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-----------~~~~lS~G~~qrl~laral~ 146 (232)
T cd03300 78 FQNYALFPHLTVFENIAFGLRLKKLPKAEIKERVAEALDLVQLEGYANR-----------KPSQLSGGQQQRVAIARALV 146 (232)
T ss_pred ecccccCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchhhcC-----------ChhhCCHHHHHHHHHHHHHh
Confidence 999998864 99999986521 12 3455667777777655443 34689999999999999999
Q ss_pred cCCCeeeeeCCCCCcCHHHHHHHHHHHHh--c-CCCEEEEEccCCCccc-cCCEEEEEeCCeEEEccChHHHHh
Q 037346 499 QDADIFLLDDPFSPVDDHTGAHLFKFCWV--S-SSKTVIYATHQVEFLP-AADLILVIKDGKITQAGKYSDILN 568 (1156)
Q Consensus 499 ~~~~illlDep~s~lD~~~~~~i~~~~~~--~-~~~tvi~vtH~~~~~~-~~d~i~~l~~G~i~~~g~~~~l~~ 568 (1156)
.+|+++||||||++||+.+++.+.+.+.. . .|+|+|++||+++.+. .||++++|++|++.+.|+++++..
T Consensus 147 ~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~~~~~tiii~sh~~~~~~~~~d~i~~l~~G~~~~~~~~~~~~~ 220 (232)
T cd03300 147 NEPKVLLLDEPLGALDLKLRKDMQLELKRLQKELGITFVFVTHDQEEALTMSDRIAVMNKGKIQQIGTPEEIYE 220 (232)
T ss_pred cCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCEEEEEECCEEEecCCHHHHHh
Confidence 99999999999999999999998876643 2 3899999999999886 599999999999999999887764
|
PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >COG1137 YhbG ABC-type (unclassified) transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-37 Score=307.74 Aligned_cols=199 Identities=28% Similarity=0.431 Sum_probs=169.4
Q ss_pred cEEEeeeEEEeCCCCCCCccccceEEeeCCeEEEEEcCCCCChHHHHHHHhCCCCCCCcEEEEcCe--------------
Q 037346 357 AIEIIDGSFSWDFSSPNPTLRNINLKVFHGMRVAVCGTVGSGKSSCLSCILGGVPKESGIIRLCGT-------------- 422 (1156)
Q Consensus 357 ~i~~~~~~f~~~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKSTll~~i~g~~~~~~G~i~~~g~-------------- 422 (1156)
.+..+|+.++|. .+++.+++||++++||++++.||||+||||.+.++.|+.+|++|+|.++|.
T Consensus 4 ~L~a~~l~K~y~---kr~Vv~~Vsl~v~~GEiVGLLGPNGAGKTT~Fymi~Glv~~d~G~i~ld~~diT~lPm~~RArlG 80 (243)
T COG1137 4 TLVAENLAKSYK---KRKVVNDVSLEVNSGEIVGLLGPNGAGKTTTFYMIVGLVRPDSGKILLDDEDITKLPMHKRARLG 80 (243)
T ss_pred EEEehhhhHhhC---CeeeeeeeeEEEcCCcEEEEECCCCCCceeEEEEEEEEEecCCceEEECCcccccCChHHHhhcC
Confidence 478899999996 568999999999999999999999999999999999999999999999983
Q ss_pred EEEEecCCcCCCc-cHHHHhhcCCCC---C------HHHHHHHHHHhCCchhhhhCCCCCccccccCCCCCCHHHHHHHH
Q 037346 423 KAYVAQSPWIQSG-KIEENILFGKEM---D------RERYERVLEACSLKKDLEVLPFGDQTIIGERGINLSGGQKQRIQ 492 (1156)
Q Consensus 423 ~~~v~Q~~~~~~~-ti~eni~~~~~~---~------~~~~~~~~~~~~l~~~~~~~~~g~~t~v~~~g~~LSgGqkqRi~ 492 (1156)
+||+||+|.+|.. ||+|||..-.+. + +++.++.++...+.+. -...+.+||||||.|+.
T Consensus 81 igYLpQE~SIFr~LtV~dNi~~vlE~~~~d~~~~~~~~~l~~LL~ef~i~hl-----------r~~~a~sLSGGERRR~E 149 (243)
T COG1137 81 IGYLPQEASIFRKLTVEDNIMAVLEIREKDLKKAERKEELDALLEEFHITHL-----------RDSKAYSLSGGERRRVE 149 (243)
T ss_pred cccccccchHhhcCcHHHHHHHHHhhhhcchhHHHHHHHHHHHHHHhchHHH-----------hcCcccccccchHHHHH
Confidence 6999999999976 999999764332 1 1223445555555432 24567899999999999
Q ss_pred HHHhhccCCCeeeeeCCCCCcCHHHHHHHHHHHHh--cCCCEEEEEccCC-CccccCCEEEEEeCCeEEEccChHHHHhc
Q 037346 493 IARPLYQDADIFLLDDPFSPVDDHTGAHLFKFCWV--SSSKTVIYATHQV-EFLPAADLILVIKDGKITQAGKYSDILNS 569 (1156)
Q Consensus 493 lAral~~~~~illlDep~s~lD~~~~~~i~~~~~~--~~~~tvi~vtH~~-~~~~~~d~i~~l~~G~i~~~g~~~~l~~~ 569 (1156)
|||||..+|+.+||||||+++||.+...|-+.+.. .+|-.|++.-|+. +++..|||.|++.+|++...|+++++.++
T Consensus 150 IARaLa~~P~fiLLDEPFAGVDPiaV~dIq~iI~~L~~rgiGvLITDHNVREtL~i~dRaYIi~~G~vla~G~p~ei~~n 229 (243)
T COG1137 150 IARALAANPKFILLDEPFAGVDPIAVIDIQRIIKHLKDRGIGVLITDHNVRETLDICDRAYIISDGKVLAEGSPEEIVNN 229 (243)
T ss_pred HHHHHhcCCCEEEecCCccCCCchhHHHHHHHHHHHHhCCceEEEccccHHHHHhhhheEEEEecCeEEecCCHHHHhcC
Confidence 99999999999999999999999998887554422 5678899999997 56889999999999999999999999864
|
|
| >PRK14261 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.2e-36 Score=331.65 Aligned_cols=202 Identities=25% Similarity=0.349 Sum_probs=169.3
Q ss_pred cEEEeeeEEEeCCCCCCCccccceEEeeCCeEEEEEcCCCCChHHHHHHHhCCCCC-----CCcEEEEcC----------
Q 037346 357 AIEIIDGSFSWDFSSPNPTLRNINLKVFHGMRVAVCGTVGSGKSSCLSCILGGVPK-----ESGIIRLCG---------- 421 (1156)
Q Consensus 357 ~i~~~~~~f~~~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKSTll~~i~g~~~~-----~~G~i~~~g---------- 421 (1156)
.|+++|++|.|+ ++++|+|+||+|++||+++|+||||||||||+++|+|+.++ ++|+|.++|
T Consensus 6 ~i~~~~l~~~~~---~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~ 82 (253)
T PRK14261 6 ILSTKNLNLWYG---EKHALYDITISIPKNRVTALIGPSGCGKSTLLRCFNRMNDLIPGCRITGDILYNGENIMDSGADV 82 (253)
T ss_pred eEEEeeeEEEEC---CeeeeeeeEEEECCCcEEEEECCCCCCHHHHHHHHhccccCCCCCCcceEEEECCEEccccccch
Confidence 589999999996 35799999999999999999999999999999999998753 489999876
Q ss_pred -----eEEEEecCCcCCCccHHHHhhcCCCC----CH----HHHHHHHHHhCCchhhhhCCCCCccccccCCCCCCHHHH
Q 037346 422 -----TKAYVAQSPWIQSGKIEENILFGKEM----DR----ERYERVLEACSLKKDLEVLPFGDQTIIGERGINLSGGQK 488 (1156)
Q Consensus 422 -----~~~~v~Q~~~~~~~ti~eni~~~~~~----~~----~~~~~~~~~~~l~~~~~~~~~g~~t~v~~~g~~LSgGqk 488 (1156)
.++|++|+|.+++.|++||+.++... +. ++..++++.+++.+.+. +..++.+.+||||||
T Consensus 83 ~~~~~~i~~~~q~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~-------~~~~~~~~~LS~G~~ 155 (253)
T PRK14261 83 VALRRKIGMVFQRPNPFPKSIYENVAYGPRIHGEKNKKTLDTIVEKSLKGAALWDEVK-------DRLHDSALSLSGGQQ 155 (253)
T ss_pred hhhhceEEEEecCCccCcccHHHHHHhhHHhcCCCCHHHHHHHHHHHHHHhcCchhhH-------HHhhcChhhCCHHHH
Confidence 26899999998888999999986321 11 23344555555543322 234567789999999
Q ss_pred HHHHHHHhhccCCCeeeeeCCCCCcCHHHHHHHHHHHHh-cCCCEEEEEccCCCccc-cCCEEEEEeCCeEEEccChHHH
Q 037346 489 QRIQIARPLYQDADIFLLDDPFSPVDDHTGAHLFKFCWV-SSSKTVIYATHQVEFLP-AADLILVIKDGKITQAGKYSDI 566 (1156)
Q Consensus 489 qRi~lAral~~~~~illlDep~s~lD~~~~~~i~~~~~~-~~~~tvi~vtH~~~~~~-~~d~i~~l~~G~i~~~g~~~~l 566 (1156)
||++||||++.+|+++||||||++||+.+++++.+.+.. .+++|+|++||+++.+. .||++++|++|++++.|+.+++
T Consensus 156 qrv~laral~~~p~lllLDEP~~gLD~~~~~~l~~~l~~~~~~~tvii~sh~~~~~~~~~d~v~~l~~G~i~~~g~~~~~ 235 (253)
T PRK14261 156 QRLCIARTLAVNPEVILMDEPCSALDPIATAKIEDLIEDLKKEYTVIIVTHNMQQAARVSDYTGFMYLGKLIEFDKTTQI 235 (253)
T ss_pred HHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhhCceEEEEEcCHHHHHhhCCEEEEEECCEEEEcCCHHHH
Confidence 999999999999999999999999999999988776644 34689999999999986 5999999999999999999887
Q ss_pred Hh
Q 037346 567 LN 568 (1156)
Q Consensus 567 ~~ 568 (1156)
..
T Consensus 236 ~~ 237 (253)
T PRK14261 236 FE 237 (253)
T ss_pred Hh
Confidence 64
|
|
| >COG4525 TauB ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-36 Score=298.74 Aligned_cols=194 Identities=28% Similarity=0.432 Sum_probs=163.7
Q ss_pred EEEeeeEEEeCCCCCCCccccceEEeeCCeEEEEEcCCCCChHHHHHHHhCCCCCCCcEEEEcCe--------EEEEecC
Q 037346 358 IEIIDGSFSWDFSSPNPTLRNINLKVFHGMRVAVCGTVGSGKSSCLSCILGGVPKESGIIRLCGT--------KAYVAQS 429 (1156)
Q Consensus 358 i~~~~~~f~~~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKSTll~~i~g~~~~~~G~i~~~g~--------~~~v~Q~ 429 (1156)
+.+++++.+|+.. ..++|+|+|++|.+||+++++||||||||||||+++|+++|..|+|.+||+ -|.|+|+
T Consensus 4 l~~~~~sl~y~g~-~~~~le~vsL~ia~ge~vv~lGpSGcGKTTLLnl~AGf~~P~~G~i~l~~r~i~gPgaergvVFQ~ 82 (259)
T COG4525 4 LNVSHLSLSYEGK-PRSALEDVSLTIASGELVVVLGPSGCGKTTLLNLIAGFVTPSRGSIQLNGRRIEGPGAERGVVFQN 82 (259)
T ss_pred eehhheEEecCCc-chhhhhccceeecCCCEEEEEcCCCccHHHHHHHHhcCcCcccceEEECCEeccCCCccceeEecc
Confidence 5567889999753 356999999999999999999999999999999999999999999999986 3899999
Q ss_pred CcCCC-ccHHHHhhcCCCC---C----HHHHHHHHHHhCCchhhhhCCCCCccccccCCCCCCHHHHHHHHHHHhhccCC
Q 037346 430 PWIQS-GKIEENILFGKEM---D----RERYERVLEACSLKKDLEVLPFGDQTIIGERGINLSGGQKQRIQIARPLYQDA 501 (1156)
Q Consensus 430 ~~~~~-~ti~eni~~~~~~---~----~~~~~~~~~~~~l~~~~~~~~~g~~t~v~~~g~~LSgGqkqRi~lAral~~~~ 501 (1156)
+-+++ .++.||+.||... + .+...+.+..++|.+.-+ ....+||||||||+.|||||..+|
T Consensus 83 ~~LlPWl~~~dNvafgL~l~Gi~k~~R~~~a~q~l~~VgL~~~~~-----------~~i~qLSGGmrQRvGiARALa~eP 151 (259)
T COG4525 83 EALLPWLNVIDNVAFGLQLRGIEKAQRREIAHQMLALVGLEGAEH-----------KYIWQLSGGMRQRVGIARALAVEP 151 (259)
T ss_pred CccchhhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhCcccccc-----------cceEeecchHHHHHHHHHHhhcCc
Confidence 87665 5999999998642 2 244556677777765332 334689999999999999999999
Q ss_pred CeeeeeCCCCCcCHHHHHHHHHHHHh---cCCCEEEEEccCCCcc-ccCCEEEEEe--CCeEEEccCh
Q 037346 502 DIFLLDDPFSPVDDHTGAHLFKFCWV---SSSKTVIYATHQVEFL-PAADLILVIK--DGKITQAGKY 563 (1156)
Q Consensus 502 ~illlDep~s~lD~~~~~~i~~~~~~---~~~~tvi~vtH~~~~~-~~~d~i~~l~--~G~i~~~g~~ 563 (1156)
+.|+||||++|||+-+++++-+.++. ..|+.+++|||+++.. -.|+++++|. .|+|++.-++
T Consensus 152 ~~LlLDEPfgAlDa~tRe~mQelLldlw~~tgk~~lliTH~ieEAlflatrLvvlsp~pgRvv~~~~~ 219 (259)
T COG4525 152 QLLLLDEPFGALDALTREQMQELLLDLWQETGKQVLLITHDIEEALFLATRLVVLSPGPGRVVERLPL 219 (259)
T ss_pred ceEeecCchhhHHHHHHHHHHHHHHHHHHHhCCeEEEEeccHHHHHhhhheeEEecCCCceeeEecCC
Confidence 99999999999999999988665543 6799999999999885 4699999997 6899876544
|
|
| >TIGR00968 3a0106s01 sulfate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.3e-36 Score=327.94 Aligned_cols=197 Identities=35% Similarity=0.477 Sum_probs=168.0
Q ss_pred EEEeeeEEEeCCCCCCCccccceEEeeCCeEEEEEcCCCCChHHHHHHHhCCCCCCCcEEEEcC-----------eEEEE
Q 037346 358 IEIIDGSFSWDFSSPNPTLRNINLKVFHGMRVAVCGTVGSGKSSCLSCILGGVPKESGIIRLCG-----------TKAYV 426 (1156)
Q Consensus 358 i~~~~~~f~~~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKSTll~~i~g~~~~~~G~i~~~g-----------~~~~v 426 (1156)
++++|++++|+ ++++|+|+||++.+||+++|+||||||||||+++|+|+++|++|+|.++| .++|+
T Consensus 1 i~i~~l~~~~~---~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~i~g~~~~~~~~~~~~i~~~ 77 (237)
T TIGR00968 1 IEIANISKRFG---SFQALDDVNLEVPTGSLVALLGPSGSGKSTLLRIIAGLEQPDSGRIRLNGQDATRVHARDRKIGFV 77 (237)
T ss_pred CEEEEEEEEEC---CeeeeeeEEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcCcCChhhcCEEEE
Confidence 46899999996 34799999999999999999999999999999999999999999999986 36999
Q ss_pred ecCCcCCCc-cHHHHhhcCCC---CC----HHHHHHHHHHhCCchhhhhCCCCCccccccCCCCCCHHHHHHHHHHHhhc
Q 037346 427 AQSPWIQSG-KIEENILFGKE---MD----RERYERVLEACSLKKDLEVLPFGDQTIIGERGINLSGGQKQRIQIARPLY 498 (1156)
Q Consensus 427 ~Q~~~~~~~-ti~eni~~~~~---~~----~~~~~~~~~~~~l~~~~~~~~~g~~t~v~~~g~~LSgGqkqRi~lAral~ 498 (1156)
||+|.++.+ |++||+.++.. .+ .++..++++.+++.+..+ ....+||||||||++||||++
T Consensus 78 ~q~~~~~~~~t~~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-----------~~~~~lS~G~~qrl~laral~ 146 (237)
T TIGR00968 78 FQHYALFKHLTVRDNIAFGLEIRKHPKAKIKARVEELLELVQLEGLGD-----------RYPNQLSGGQRQRVALARALA 146 (237)
T ss_pred ecChhhccCCcHHHHHHhHHHhcCCCHHHHHHHHHHHHHHcCCHhHhh-----------CChhhCCHHHHHHHHHHHHHh
Confidence 999988865 99999987542 11 233455666666644332 344689999999999999999
Q ss_pred cCCCeeeeeCCCCCcCHHHHHHHHHHHHh--cC-CCEEEEEccCCCccc-cCCEEEEEeCCeEEEccChHHHHh
Q 037346 499 QDADIFLLDDPFSPVDDHTGAHLFKFCWV--SS-SKTVIYATHQVEFLP-AADLILVIKDGKITQAGKYSDILN 568 (1156)
Q Consensus 499 ~~~~illlDep~s~lD~~~~~~i~~~~~~--~~-~~tvi~vtH~~~~~~-~~d~i~~l~~G~i~~~g~~~~l~~ 568 (1156)
++|+++||||||++||+.+++.+.+.+.. .+ ++|+|++||+++.+. .||++++|++|++++.|+.+++.+
T Consensus 147 ~~p~llllDEP~~~LD~~~~~~~~~~l~~~~~~~~~tvli~sH~~~~~~~~~d~i~~l~~g~i~~~~~~~~~~~ 220 (237)
T TIGR00968 147 VEPQVLLLDEPFGALDAKVRKELRSWLRKLHDEVHVTTVFVTHDQEEAMEVADRIVVMSNGKIEQIGSPDEVYD 220 (237)
T ss_pred cCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhhcCEEEEEECCEEEEecCHHHHHc
Confidence 99999999999999999999998876643 23 789999999999875 499999999999999999888764
|
|
| >PRK14254 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.7e-36 Score=336.22 Aligned_cols=203 Identities=25% Similarity=0.389 Sum_probs=169.7
Q ss_pred ccEEEeeeEEEeCCCCCCCccccceEEeeCCeEEEEEcCCCCChHHHHHHHhCCCC-----CCCcEEEEcC---------
Q 037346 356 TAIEIIDGSFSWDFSSPNPTLRNINLKVFHGMRVAVCGTVGSGKSSCLSCILGGVP-----KESGIIRLCG--------- 421 (1156)
Q Consensus 356 ~~i~~~~~~f~~~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKSTll~~i~g~~~-----~~~G~i~~~g--------- 421 (1156)
..++++|+++.|+ ++++|+|+||+|++||+++|+||||||||||+++|+|+++ |++|+|.++|
T Consensus 38 ~~l~i~~l~~~~~---~~~il~~is~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~~~p~~G~I~i~G~~i~~~~~~ 114 (285)
T PRK14254 38 TVIEARDLNVFYG---DEQALDDVSMDIPENQVTAMIGPSGCGKSTFLRCINRMNDLIDAARVEGELTFRGKNVYDADVD 114 (285)
T ss_pred ceEEEEEEEEEEC---CEeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCcccCCCCceEEEECCEEccccccc
Confidence 4599999999996 3579999999999999999999999999999999999997 6899999976
Q ss_pred ------eEEEEecCCcCCCccHHHHhhcCCC---C---CHHHHHHHHHHhCCchhhhhCCCCCccccccCCCCCCHHHHH
Q 037346 422 ------TKAYVAQSPWIQSGKIEENILFGKE---M---DRERYERVLEACSLKKDLEVLPFGDQTIIGERGINLSGGQKQ 489 (1156)
Q Consensus 422 ------~~~~v~Q~~~~~~~ti~eni~~~~~---~---~~~~~~~~~~~~~l~~~~~~~~~g~~t~v~~~g~~LSgGqkq 489 (1156)
.++|++|++.++..|++||+.++.. . ..++.+++++.+++...+. ...++++.+|||||||
T Consensus 115 ~~~~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i~-------~~~~~~~~~LSgGe~q 187 (285)
T PRK14254 115 PVALRRRIGMVFQKPNPFPKSIYDNVAYGLKIQGYDGDIDERVEESLRRAALWDEVK-------DQLDSSGLDLSGGQQQ 187 (285)
T ss_pred hHhhhccEEEEecCCccCcCCHHHHHHHHHHHcCCcHHHHHHHHHHHHHcCCCchhH-------HHHhCCcccCCHHHHH
Confidence 2689999999888899999987521 1 1334566676666643322 1234567899999999
Q ss_pred HHHHHHhhccCCCeeeeeCCCCCcCHHHHHHHHHHHHh-cCCCEEEEEccCCCccc-cCCEEE-EEeCCeEEEccChHHH
Q 037346 490 RIQIARPLYQDADIFLLDDPFSPVDDHTGAHLFKFCWV-SSSKTVIYATHQVEFLP-AADLIL-VIKDGKITQAGKYSDI 566 (1156)
Q Consensus 490 Ri~lAral~~~~~illlDep~s~lD~~~~~~i~~~~~~-~~~~tvi~vtH~~~~~~-~~d~i~-~l~~G~i~~~g~~~~l 566 (1156)
|++|||||+.+|+++||||||++||+.+.+.+.+.+.. .+++|+|++||+++.+. .||+++ +|++|++++.|+++++
T Consensus 188 rv~LAraL~~~p~lLLLDEPts~LD~~~~~~l~~~L~~~~~~~tiii~tH~~~~i~~~~dri~v~l~~G~i~~~g~~~~~ 267 (285)
T PRK14254 188 RLCIARAIAPDPEVILMDEPASALDPVATSKIEDLIEELAEEYTVVIVTHNMQQAARISDKTAVFLTGGELVEFDDTDKI 267 (285)
T ss_pred HHHHHHHHHcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhhcCEEEEEeeCCEEEEeCCHHHH
Confidence 99999999999999999999999999999988876644 23579999999999976 499975 5799999999998887
Q ss_pred Hh
Q 037346 567 LN 568 (1156)
Q Consensus 567 ~~ 568 (1156)
..
T Consensus 268 ~~ 269 (285)
T PRK14254 268 FE 269 (285)
T ss_pred Hh
Confidence 54
|
|
| >PRK14271 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7e-36 Score=333.55 Aligned_cols=204 Identities=24% Similarity=0.346 Sum_probs=171.3
Q ss_pred ccEEEeeeEEEeCCCCCCCccccceEEeeCCeEEEEEcCCCCChHHHHHHHhCCCCC-----CCcEEEEcC---------
Q 037346 356 TAIEIIDGSFSWDFSSPNPTLRNINLKVFHGMRVAVCGTVGSGKSSCLSCILGGVPK-----ESGIIRLCG--------- 421 (1156)
Q Consensus 356 ~~i~~~~~~f~~~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKSTll~~i~g~~~~-----~~G~i~~~g--------- 421 (1156)
..++++|++++|+ ++++|+|+||+|++||+++|+|+||||||||+++|+|+++| ++|+|.++|
T Consensus 20 ~~l~i~nl~~~~~---~~~il~~vs~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~p~~~~~~~G~i~~~g~~i~~~~~~ 96 (276)
T PRK14271 20 PAMAAVNLTLGFA---GKTVLDQVSMGFPARAVTSLMGPTGSGKTTFLRTLNRMNDKVSGYRYSGDVLLGGRSIFNYRDV 96 (276)
T ss_pred cEEEEeeEEEEEC---CEEEeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhccCCcCCCCCCceEEEECCEEccccchh
Confidence 4689999999996 35799999999999999999999999999999999999986 699999987
Q ss_pred -----eEEEEecCCcCCCccHHHHhhcCCC----CCHHH----HHHHHHHhCCchhhhhCCCCCccccccCCCCCCHHHH
Q 037346 422 -----TKAYVAQSPWIQSGKIEENILFGKE----MDRER----YERVLEACSLKKDLEVLPFGDQTIIGERGINLSGGQK 488 (1156)
Q Consensus 422 -----~~~~v~Q~~~~~~~ti~eni~~~~~----~~~~~----~~~~~~~~~l~~~~~~~~~g~~t~v~~~g~~LSgGqk 488 (1156)
.++|++|+|.+++.|++||+.++.. ...+. ..+.++.+++...+ .+.+.+.+.+||||||
T Consensus 97 ~~~~~~i~~v~q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-------~~~l~~~~~~LSgGq~ 169 (276)
T PRK14271 97 LEFRRRVGMLFQRPNPFPMSIMDNVLAGVRAHKLVPRKEFRGVAQARLTEVGLWDAV-------KDRLSDSPFRLSGGQQ 169 (276)
T ss_pred HHHhhheEEeccCCccCCccHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCCchh-------hhHhhCCcccCCHHHH
Confidence 2689999999888999999987531 22222 23455566654322 1233466789999999
Q ss_pred HHHHHHHhhccCCCeeeeeCCCCCcCHHHHHHHHHHHHh-cCCCEEEEEccCCCccc-cCCEEEEEeCCeEEEccChHHH
Q 037346 489 QRIQIARPLYQDADIFLLDDPFSPVDDHTGAHLFKFCWV-SSSKTVIYATHQVEFLP-AADLILVIKDGKITQAGKYSDI 566 (1156)
Q Consensus 489 qRi~lAral~~~~~illlDep~s~lD~~~~~~i~~~~~~-~~~~tvi~vtH~~~~~~-~~d~i~~l~~G~i~~~g~~~~l 566 (1156)
||++||||++.+|+++||||||++||+.+++.+++.+.. .+++|+|++||+++.+. .||++++|++|++++.|+++++
T Consensus 170 qrl~LAral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~tiiivsH~~~~~~~~~dri~~l~~G~i~~~g~~~~~ 249 (276)
T PRK14271 170 QLLCLARTLAVNPEVLLLDEPTSALDPTTTEKIEEFIRSLADRLTVIIVTHNLAQAARISDRAALFFDGRLVEEGPTEQL 249 (276)
T ss_pred HHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHH
Confidence 999999999999999999999999999999988876644 23589999999999876 5999999999999999999988
Q ss_pred Hhc
Q 037346 567 LNS 569 (1156)
Q Consensus 567 ~~~ 569 (1156)
.+.
T Consensus 250 ~~~ 252 (276)
T PRK14271 250 FSS 252 (276)
T ss_pred HhC
Confidence 754
|
|
| >PRK14275 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5e-36 Score=336.50 Aligned_cols=205 Identities=23% Similarity=0.373 Sum_probs=169.7
Q ss_pred CccEEEeeeEEEeCCCCCCCccccceEEeeCCeEEEEEcCCCCChHHHHHHHhCCCC-----CCCcEEEEcC--------
Q 037346 355 DTAIEIIDGSFSWDFSSPNPTLRNINLKVFHGMRVAVCGTVGSGKSSCLSCILGGVP-----KESGIIRLCG-------- 421 (1156)
Q Consensus 355 ~~~i~~~~~~f~~~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKSTll~~i~g~~~-----~~~G~i~~~g-------- 421 (1156)
+..++++|+++.|+ +.++|+|+||+|++||+++|+||||||||||+++|+|+.+ |++|+|.++|
T Consensus 37 ~~~l~~~~l~~~~~---~~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~L~Gl~~~~p~~~~~G~I~~~g~~i~~~~~ 113 (286)
T PRK14275 37 KPHVVAKNFSIYYG---EFEAVKKVNADILSKYVTAIIGPSGCGKSTFLRAINRMNDLIPSCHTTGALMFDGEDIYGKFT 113 (286)
T ss_pred ceEEEEeeeEEEEC---CEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCCceEEEECCEEhhhccc
Confidence 34689999999996 3469999999999999999999999999999999999864 4999999976
Q ss_pred -------eEEEEecCCcCCCccHHHHhhcCCC---C-CH----HHHHHHHHHhCCchhhhhCCCCCccccccCCCCCCHH
Q 037346 422 -------TKAYVAQSPWIQSGKIEENILFGKE---M-DR----ERYERVLEACSLKKDLEVLPFGDQTIIGERGINLSGG 486 (1156)
Q Consensus 422 -------~~~~v~Q~~~~~~~ti~eni~~~~~---~-~~----~~~~~~~~~~~l~~~~~~~~~g~~t~v~~~g~~LSgG 486 (1156)
.++|++|+|.++..|++||+.++.. . +. ++..++++.+++...+. ......+.+||||
T Consensus 114 ~~~~~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~-------~~~~~~~~~LSgG 186 (286)
T PRK14275 114 DEVLLRKKIGMVFQKPNPFPKSIFDNIAYGPRLHGINDKKQLEEIVEKSLRKAALWDEVS-------DRLDKNALGLSGG 186 (286)
T ss_pred chHHhhhcEEEECCCCCCCccCHHHHHHhHHHhcCCCcHHHHHHHHHHHHHHhCCccchh-------hHhhCChhhCCHH
Confidence 2689999999888899999987632 1 11 23344555555532221 1234567899999
Q ss_pred HHHHHHHHHhhccCCCeeeeeCCCCCcCHHHHHHHHHHHHh-cCCCEEEEEccCCCccc-cCCEEEEEeCCeEEEccChH
Q 037346 487 QKQRIQIARPLYQDADIFLLDDPFSPVDDHTGAHLFKFCWV-SSSKTVIYATHQVEFLP-AADLILVIKDGKITQAGKYS 564 (1156)
Q Consensus 487 qkqRi~lAral~~~~~illlDep~s~lD~~~~~~i~~~~~~-~~~~tvi~vtH~~~~~~-~~d~i~~l~~G~i~~~g~~~ 564 (1156)
||||++|||||+.+|+++||||||++||+.+.+.+.+.+.. .+++|+|++||+++.+. .||++++|++|++++.|+++
T Consensus 187 q~qrv~LAraL~~~p~lllLDEPt~gLD~~~~~~l~~~L~~~~~~~tvIivsH~~~~~~~~~d~i~~L~~G~i~~~g~~~ 266 (286)
T PRK14275 187 QQQRLCVARTLAVEPEILLLDEPTSALDPKATAKIEDLIQELRGSYTIMIVTHNMQQASRVSDYTMFFYEGVLVEHAPTA 266 (286)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHH
Confidence 99999999999999999999999999999999998876644 34689999999999986 59999999999999999998
Q ss_pred HHHhc
Q 037346 565 DILNS 569 (1156)
Q Consensus 565 ~l~~~ 569 (1156)
++.+.
T Consensus 267 ~~~~~ 271 (286)
T PRK14275 267 QLFTN 271 (286)
T ss_pred HHHhC
Confidence 87653
|
|
| >cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain | Back alignment and domain information |
|---|
Probab=100.00 E-value=4e-36 Score=312.38 Aligned_cols=158 Identities=39% Similarity=0.565 Sum_probs=144.8
Q ss_pred EEEeeeEEEeCCCCCCCccccceEEeeCCeEEEEEcCCCCChHHHHHHHhCCCCCCCcEEEEcC-------------eEE
Q 037346 358 IEIIDGSFSWDFSSPNPTLRNINLKVFHGMRVAVCGTVGSGKSSCLSCILGGVPKESGIIRLCG-------------TKA 424 (1156)
Q Consensus 358 i~~~~~~f~~~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKSTll~~i~g~~~~~~G~i~~~g-------------~~~ 424 (1156)
++++|++++|+.. +.++++|+||++++||+++|+||||||||||+++|+|+++|++|+|.++| .++
T Consensus 1 i~~~~l~~~~~~~-~~~~l~~~~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 79 (173)
T cd03246 1 LEVENVSFRYPGA-EPPVLRNVSFSIEPGESLAIIGPSGSGKSTLARLILGLLRPTSGRVRLDGADISQWDPNELGDHVG 79 (173)
T ss_pred CEEEEEEEEcCCC-CCcceeeeEEEECCCCEEEEECCCCCCHHHHHHHHHhccCCCCCeEEECCEEcccCCHHHHHhheE
Confidence 4689999999632 34699999999999999999999999999999999999999999999987 268
Q ss_pred EEecCCcCCCccHHHHhhcCCCCCHHHHHHHHHHhCCchhhhhCCCCCccccccCCCCCCHHHHHHHHHHHhhccCCCee
Q 037346 425 YVAQSPWIQSGKIEENILFGKEMDRERYERVLEACSLKKDLEVLPFGDQTIIGERGINLSGGQKQRIQIARPLYQDADIF 504 (1156)
Q Consensus 425 ~v~Q~~~~~~~ti~eni~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~t~v~~~g~~LSgGqkqRi~lAral~~~~~il 504 (1156)
|++|+|++++.|++||+ ||||||||++||||++.+|+++
T Consensus 80 ~~~q~~~~~~~tv~~~l-----------------------------------------LS~G~~qrv~la~al~~~p~~l 118 (173)
T cd03246 80 YLPQDDELFSGSIAENI-----------------------------------------LSGGQRQRLGLARALYGNPRIL 118 (173)
T ss_pred EECCCCccccCcHHHHC-----------------------------------------cCHHHHHHHHHHHHHhcCCCEE
Confidence 99999999888999998 9999999999999999999999
Q ss_pred eeeCCCCCcCHHHHHHHHHHHHh--cCCCEEEEEccCCCccccCCEEEEEeCCeE
Q 037346 505 LLDDPFSPVDDHTGAHLFKFCWV--SSSKTVIYATHQVEFLPAADLILVIKDGKI 557 (1156)
Q Consensus 505 llDep~s~lD~~~~~~i~~~~~~--~~~~tvi~vtH~~~~~~~~d~i~~l~~G~i 557 (1156)
||||||++||+.+++.+.+.+.. .+|+|+|++||+++.+..||++++|++|++
T Consensus 119 llDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~~~~~d~v~~l~~G~i 173 (173)
T cd03246 119 VLDEPNSHLDVEGERALNQAIAALKAAGATRIVIAHRPETLASADRILVLEDGRV 173 (173)
T ss_pred EEECCccccCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHhCCEEEEEECCCC
Confidence 99999999999999998876644 357899999999998878999999999974
|
They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra |
| >PRK14252 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.9e-36 Score=331.82 Aligned_cols=204 Identities=28% Similarity=0.377 Sum_probs=172.2
Q ss_pred CccEEEeeeEEEeCCCCCCCccccceEEeeCCeEEEEEcCCCCChHHHHHHHhCCCCC-----CCcEEEEcC--------
Q 037346 355 DTAIEIIDGSFSWDFSSPNPTLRNINLKVFHGMRVAVCGTVGSGKSSCLSCILGGVPK-----ESGIIRLCG-------- 421 (1156)
Q Consensus 355 ~~~i~~~~~~f~~~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKSTll~~i~g~~~~-----~~G~i~~~g-------- 421 (1156)
.+.|+++|++++|+ ++++|+|+||+|++||+++|+|+||||||||+++|+|+.+| ++|+|.++|
T Consensus 14 ~~~l~~~~l~~~~~---~~~vl~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~sG~i~~~g~~~~~~~~ 90 (265)
T PRK14252 14 QQKSEVNKLNFYYG---GYQALKNINMMVHEKQVTALIGPSGCGKSTFLRCFNRMHDLYPGNHYEGEIILHPDNVNILSP 90 (265)
T ss_pred CceEEEEEEEEEEC---CeeeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcccCCCCCCCcccEEEEcCcccccccc
Confidence 35699999999996 34799999999999999999999999999999999999875 799999865
Q ss_pred ---------eEEEEecCCcCCCccHHHHhhcCCC---C-----CHHHHHHHHHHhCCchhhhhCCCCCccccccCCCCCC
Q 037346 422 ---------TKAYVAQSPWIQSGKIEENILFGKE---M-----DRERYERVLEACSLKKDLEVLPFGDQTIIGERGINLS 484 (1156)
Q Consensus 422 ---------~~~~v~Q~~~~~~~ti~eni~~~~~---~-----~~~~~~~~~~~~~l~~~~~~~~~g~~t~v~~~g~~LS 484 (1156)
.++|++|++.++..|++||+.++.. . .+++...+++.+++.+++. +..++.+.+||
T Consensus 91 ~~~~~~~~~~i~~~~q~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~-------~~~~~~~~~LS 163 (265)
T PRK14252 91 EVDPIEVRMRISMVFQKPNPFPKSIFENVAYGLRIRGVKRRSILEERVENALRNAALWDEVK-------DRLGDLAFNLS 163 (265)
T ss_pred ccCHHHHhccEEEEccCCcCCcchHHHHHHhHHHHcCCChHHHHHHHHHHHHHHcCCchhhh-------HHHhCCcccCC
Confidence 2689999999988899999987531 1 1244556666666643332 23456678999
Q ss_pred HHHHHHHHHHHhhccCCCeeeeeCCCCCcCHHHHHHHHHHHHh-cCCCEEEEEccCCCccc-cCCEEEEEeCCeEEEccC
Q 037346 485 GGQKQRIQIARPLYQDADIFLLDDPFSPVDDHTGAHLFKFCWV-SSSKTVIYATHQVEFLP-AADLILVIKDGKITQAGK 562 (1156)
Q Consensus 485 gGqkqRi~lAral~~~~~illlDep~s~lD~~~~~~i~~~~~~-~~~~tvi~vtH~~~~~~-~~d~i~~l~~G~i~~~g~ 562 (1156)
||||||++||||++.+|+++||||||++||+.+.+.+.+.+.. .++.|+|+|||+++.+. .||++++|++|++++.|+
T Consensus 164 ~G~~qrv~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~~~tiiivth~~~~~~~~~d~i~~l~~G~i~~~g~ 243 (265)
T PRK14252 164 GGQQQRLCIARALATDPEILLFDEPTSALDPIATASIEELISDLKNKVTILIVTHNMQQAARVSDYTAYMYMGELIEFGA 243 (265)
T ss_pred HHHHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCEEEEEecCHHHHHHhCCEEEEEECCEEEEeCC
Confidence 9999999999999999999999999999999999988876644 34689999999999986 599999999999999999
Q ss_pred hHHHHh
Q 037346 563 YSDILN 568 (1156)
Q Consensus 563 ~~~l~~ 568 (1156)
.+++..
T Consensus 244 ~~~~~~ 249 (265)
T PRK14252 244 TDTIFI 249 (265)
T ss_pred HHHHHh
Confidence 988764
|
|
| >PRK14260 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.4e-36 Score=331.29 Aligned_cols=202 Identities=24% Similarity=0.392 Sum_probs=170.5
Q ss_pred cEEEeeeEEEeCCCCCCCccccceEEeeCCeEEEEEcCCCCChHHHHHHHhCCCCC-----CCcEEEEcCe---------
Q 037346 357 AIEIIDGSFSWDFSSPNPTLRNINLKVFHGMRVAVCGTVGSGKSSCLSCILGGVPK-----ESGIIRLCGT--------- 422 (1156)
Q Consensus 357 ~i~~~~~~f~~~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKSTll~~i~g~~~~-----~~G~i~~~g~--------- 422 (1156)
.++++|++++|+ +.++|+|+||+|++||+++|+|+||||||||+++|+|+++| ++|+|.++|.
T Consensus 7 ~l~~~~l~~~~~---~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLlk~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~ 83 (259)
T PRK14260 7 AIKVKDLSFYYN---TSKAIEGISMDIYRNKVTAIIGPSGCGKSTFIKTLNRISELEGPVKVEGVVDFFGQNIYDPRINI 83 (259)
T ss_pred eEEEEEEEEEEC---CeEeecceEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcCcccCCccceEEEECCEeccccccch
Confidence 589999999996 34699999999999999999999999999999999999985 4899998862
Q ss_pred ------EEEEecCCcCCCccHHHHhhcCCC----CC----HHHHHHHHHHhCCchhhhhCCCCCccccccCCCCCCHHHH
Q 037346 423 ------KAYVAQSPWIQSGKIEENILFGKE----MD----RERYERVLEACSLKKDLEVLPFGDQTIIGERGINLSGGQK 488 (1156)
Q Consensus 423 ------~~~v~Q~~~~~~~ti~eni~~~~~----~~----~~~~~~~~~~~~l~~~~~~~~~g~~t~v~~~g~~LSgGqk 488 (1156)
++|++|++.+++.|++||+.++.. .+ .++..++++.+++.+++.. ..+..+.+||||||
T Consensus 84 ~~~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~-------~~~~~~~~LS~G~~ 156 (259)
T PRK14260 84 NRLRRQIGMVFQRPNPFPMSIYENVAYGVRISAKLPQADLDEIVESALKGAALWQEVKD-------KLNKSALGLSGGQQ 156 (259)
T ss_pred HhhhhheEEEecccccCCccHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCcchhhh-------HhcCCcccCCHHHH
Confidence 689999999888999999987521 12 2344566777777543321 23456779999999
Q ss_pred HHHHHHHhhccCCCeeeeeCCCCCcCHHHHHHHHHHHHh-cCCCEEEEEccCCCccc-cCCEEEEEe-----CCeEEEcc
Q 037346 489 QRIQIARPLYQDADIFLLDDPFSPVDDHTGAHLFKFCWV-SSSKTVIYATHQVEFLP-AADLILVIK-----DGKITQAG 561 (1156)
Q Consensus 489 qRi~lAral~~~~~illlDep~s~lD~~~~~~i~~~~~~-~~~~tvi~vtH~~~~~~-~~d~i~~l~-----~G~i~~~g 561 (1156)
||++||||++.+|+++||||||++||+.++..+.+.+.. .+++|+|++||+++.+. .||++++|+ +|++++.|
T Consensus 157 qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tiii~tH~~~~i~~~~d~i~~l~~~~~~~G~i~~~~ 236 (259)
T PRK14260 157 QRLCIARALAIKPKVLLMDEPCSALDPIATMKVEELIHSLRSELTIAIVTHNMQQATRVSDFTAFFSTDESRIGQMVEFG 236 (259)
T ss_pred HHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCeEEEEeccCCCCceEEEeC
Confidence 999999999999999999999999999999988876644 34689999999999986 599999997 59999999
Q ss_pred ChHHHHh
Q 037346 562 KYSDILN 568 (1156)
Q Consensus 562 ~~~~l~~ 568 (1156)
+++++.+
T Consensus 237 ~~~~~~~ 243 (259)
T PRK14260 237 VTTQIFS 243 (259)
T ss_pred CHHHHhc
Confidence 9998764
|
|
| >PRK15112 antimicrobial peptide ABC system ATP-binding protein SapF; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.8e-36 Score=331.45 Aligned_cols=203 Identities=21% Similarity=0.366 Sum_probs=168.6
Q ss_pred cEEEeeeEEEeCCC------CCCCccccceEEeeCCeEEEEEcCCCCChHHHHHHHhCCCCCCCcEEEEcC---------
Q 037346 357 AIEIIDGSFSWDFS------SPNPTLRNINLKVFHGMRVAVCGTVGSGKSSCLSCILGGVPKESGIIRLCG--------- 421 (1156)
Q Consensus 357 ~i~~~~~~f~~~~~------~~~~~l~~i~l~i~~g~~~~ivG~~GsGKSTll~~i~g~~~~~~G~i~~~g--------- 421 (1156)
.++++|++++|+.. ++.++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|
T Consensus 4 ~l~~~~l~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~ 83 (267)
T PRK15112 4 LLEVRNLSKTFRYRTGWFRRQTVEAVKPLSFTLREGQTLAIIGENGSGKSTLAKMLAGMIEPTSGELLIDDHPLHFGDYS 83 (267)
T ss_pred eEEEeceEEEecCCCCcccccccceeeeeeEEecCCCEEEEEcCCCCCHHHHHHHHhCCCCCCCCEEEECCEECCCCchh
Confidence 58999999999631 124799999999999999999999999999999999999999999999987
Q ss_pred ----eEEEEecCCc--CC-CccHHHHhhcCC----CCC----HHHHHHHHHHhCCchhhhhCCCCCccccccCCCCCCHH
Q 037346 422 ----TKAYVAQSPW--IQ-SGKIEENILFGK----EMD----RERYERVLEACSLKKDLEVLPFGDQTIIGERGINLSGG 486 (1156)
Q Consensus 422 ----~~~~v~Q~~~--~~-~~ti~eni~~~~----~~~----~~~~~~~~~~~~l~~~~~~~~~g~~t~v~~~g~~LSgG 486 (1156)
.++|++|+|. ++ ..|+.+|+.++. ... .++..++++.+++..... .....+||||
T Consensus 84 ~~~~~i~~v~q~~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~----------~~~~~~LS~G 153 (267)
T PRK15112 84 YRSQRIRMIFQDPSTSLNPRQRISQILDFPLRLNTDLEPEQREKQIIETLRQVGLLPDHA----------SYYPHMLAPG 153 (267)
T ss_pred hHhccEEEEecCchhhcCcchhHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCChHHH----------hcCchhcCHH
Confidence 2789999984 33 348999987531 111 234566777777743221 1234689999
Q ss_pred HHHHHHHHHhhccCCCeeeeeCCCCCcCHHHHHHHHHHHHh--c-CCCEEEEEccCCCcccc-CCEEEEEeCCeEEEccC
Q 037346 487 QKQRIQIARPLYQDADIFLLDDPFSPVDDHTGAHLFKFCWV--S-SSKTVIYATHQVEFLPA-ADLILVIKDGKITQAGK 562 (1156)
Q Consensus 487 qkqRi~lAral~~~~~illlDep~s~lD~~~~~~i~~~~~~--~-~~~tvi~vtH~~~~~~~-~d~i~~l~~G~i~~~g~ 562 (1156)
||||++||||++.+|+++||||||++||+.+.+.+.+.+.. . .|+|+|++||+++.+.. ||++++|++|++++.|+
T Consensus 154 ~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tviivsH~~~~~~~~~d~i~~l~~G~i~~~~~ 233 (267)
T PRK15112 154 QKQRLGLARALILRPKVIIADEALASLDMSMRSQLINLMLELQEKQGISYIYVTQHLGMMKHISDQVLVMHQGEVVERGS 233 (267)
T ss_pred HHHHHHHHHHHHhCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCcEEEEEeCCHHHHHHhcCEEEEEECCEEEecCC
Confidence 99999999999999999999999999999999988876644 2 47899999999999875 99999999999999999
Q ss_pred hHHHHhc
Q 037346 563 YSDILNS 569 (1156)
Q Consensus 563 ~~~l~~~ 569 (1156)
++++...
T Consensus 234 ~~~~~~~ 240 (267)
T PRK15112 234 TADVLAS 240 (267)
T ss_pred HHHHhcC
Confidence 9988754
|
|
| >PRK14265 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-35 Score=331.52 Aligned_cols=205 Identities=25% Similarity=0.351 Sum_probs=171.1
Q ss_pred CccEEEeeeEEEeCCCCCCCccccceEEeeCCeEEEEEcCCCCChHHHHHHHhCCCCC-----CCcEEEEcC--------
Q 037346 355 DTAIEIIDGSFSWDFSSPNPTLRNINLKVFHGMRVAVCGTVGSGKSSCLSCILGGVPK-----ESGIIRLCG-------- 421 (1156)
Q Consensus 355 ~~~i~~~~~~f~~~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKSTll~~i~g~~~~-----~~G~i~~~g-------- 421 (1156)
...++++|+++.|+ ++++|+|+||+|++||+++|+||||||||||+++|+|+++| ++|+|.++|
T Consensus 18 ~~~l~~~nl~~~~~---~~~~l~~vs~~i~~Ge~~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~l~~~~~ 94 (274)
T PRK14265 18 HSVFEVEGVKVFYG---GFLALVDVHLKIPAKKIIAFIGPSGCGKSTLLRCFNRMNDLIPGAKVEGRLLYRDRNIYDSQI 94 (274)
T ss_pred CceEEEeeEEEEeC---CeEEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhcccccccCCCcCceEEECCEecccccc
Confidence 34799999999996 34699999999999999999999999999999999999863 589999876
Q ss_pred -------eEEEEecCCcCCCccHHHHhhcCCC---C---CHHHHHHHHHHhCCchhhhhCCCCCccccccCCCCCCHHHH
Q 037346 422 -------TKAYVAQSPWIQSGKIEENILFGKE---M---DRERYERVLEACSLKKDLEVLPFGDQTIIGERGINLSGGQK 488 (1156)
Q Consensus 422 -------~~~~v~Q~~~~~~~ti~eni~~~~~---~---~~~~~~~~~~~~~l~~~~~~~~~g~~t~v~~~g~~LSgGqk 488 (1156)
.++|++|++.+++.|+.||+.++.. . .++...+.++.+++...+. ......+.+||||||
T Consensus 95 ~~~~~~~~i~~v~q~~~l~~~tv~~nl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~-------~~~~~~~~~LSgGq~ 167 (274)
T PRK14265 95 NSVKLRRQVGMVFQRPNPFPKSIYENIAFAPRANGYKGNLDELVEDSLRRAAIWEEVK-------DKLKEKGTALSGGQQ 167 (274)
T ss_pred hhHHHhhcEEEEccCCccccccHHHHHHhHHHhcCchHHHHHHHHHHHHHcccchhhH-------HHhcCCcccCCHHHH
Confidence 2689999999888899999987632 1 1223345566666643332 123456788999999
Q ss_pred HHHHHHHhhccCCCeeeeeCCCCCcCHHHHHHHHHHHHh-cCCCEEEEEccCCCccc-cCCEEEEEe---------CCeE
Q 037346 489 QRIQIARPLYQDADIFLLDDPFSPVDDHTGAHLFKFCWV-SSSKTVIYATHQVEFLP-AADLILVIK---------DGKI 557 (1156)
Q Consensus 489 qRi~lAral~~~~~illlDep~s~lD~~~~~~i~~~~~~-~~~~tvi~vtH~~~~~~-~~d~i~~l~---------~G~i 557 (1156)
||++|||||+.+|+++||||||++||+.+.+.+.+.+.. .+++|+|++||+++.+. .||++++|+ +|++
T Consensus 168 qrv~LAraL~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~~~~~~~~~~G~~ 247 (274)
T PRK14265 168 QRLCIARAIAMKPDVLLMDEPCSALDPISTRQVEELCLELKEQYTIIMVTHNMQQASRVADWTAFFNTEIDEYGKRRGKL 247 (274)
T ss_pred HHHHHHHHHhhCCCEEEEeCCcccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEecccccccccCceE
Confidence 999999999999999999999999999999998887654 34689999999999886 599999997 8999
Q ss_pred EEccChHHHHhc
Q 037346 558 TQAGKYSDILNS 569 (1156)
Q Consensus 558 ~~~g~~~~l~~~ 569 (1156)
++.|+.+++...
T Consensus 248 ~~~g~~~~~~~~ 259 (274)
T PRK14265 248 VEFSPTEQMFGS 259 (274)
T ss_pred EEeCCHHHHHhC
Confidence 999999988643
|
|
| >PRK14263 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-35 Score=329.20 Aligned_cols=204 Identities=22% Similarity=0.314 Sum_probs=174.3
Q ss_pred ccEEEeeeEEEeCCCCCCCccccceEEeeCCeEEEEEcCCCCChHHHHHHHhCCCCC-----CCcEEEEcCe--------
Q 037346 356 TAIEIIDGSFSWDFSSPNPTLRNINLKVFHGMRVAVCGTVGSGKSSCLSCILGGVPK-----ESGIIRLCGT-------- 422 (1156)
Q Consensus 356 ~~i~~~~~~f~~~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKSTll~~i~g~~~~-----~~G~i~~~g~-------- 422 (1156)
..+.+++.++.|. +.++|+|+||++++||+++|+|+||||||||+++|+|+++| ++|+|.++|.
T Consensus 7 ~~~~~~~~~~~~~---~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~~~~~~G~i~~~g~~i~~~~~~ 83 (261)
T PRK14263 7 IVMDCKLDKIFYG---NFMAVRDSHVPIRKNEITGFIGPSGCGKSTVLRSLNRMNDLVKGFRFEGHVHFLGQDVYGKGVD 83 (261)
T ss_pred ceEEEEeEEEEeC---CEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcccccccCCCCceEEEECCEeccccccc
Confidence 3588999999995 35799999999999999999999999999999999999986 7999999872
Q ss_pred -------EEEEecCCcCCCccHHHHhhcCCCC------CHHHHHHHHHHhCCchhhhhCCCCCccccccCCCCCCHHHHH
Q 037346 423 -------KAYVAQSPWIQSGKIEENILFGKEM------DRERYERVLEACSLKKDLEVLPFGDQTIIGERGINLSGGQKQ 489 (1156)
Q Consensus 423 -------~~~v~Q~~~~~~~ti~eni~~~~~~------~~~~~~~~~~~~~l~~~~~~~~~g~~t~v~~~g~~LSgGqkq 489 (1156)
++|++|++.++..|++||+.++... ..++..++++.+++...+.. ..++.+.+|||||||
T Consensus 84 ~~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i~~-------~~~~~~~~LS~G~~q 156 (261)
T PRK14263 84 PVVVRRYIGMVFQQPNPFSMSIFDNVAFGLRLNRYKGDLGDRVKHALQGAALWDEVKD-------KLKVSGLSLSGGQQQ 156 (261)
T ss_pred hHhhhhceEEEecCCccccccHHHHHHHHHhhcCchHHHHHHHHHHHHHcCCchhhhh-------hhhCCcccCCHHHHH
Confidence 6999999999989999999886421 12456677777777554432 234567799999999
Q ss_pred HHHHHHhhccCCCeeeeeCCCCCcCHHHHHHHHHHHHh-cCCCEEEEEccCCCccc-cCCEEEEEe--------CCeEEE
Q 037346 490 RIQIARPLYQDADIFLLDDPFSPVDDHTGAHLFKFCWV-SSSKTVIYATHQVEFLP-AADLILVIK--------DGKITQ 559 (1156)
Q Consensus 490 Ri~lAral~~~~~illlDep~s~lD~~~~~~i~~~~~~-~~~~tvi~vtH~~~~~~-~~d~i~~l~--------~G~i~~ 559 (1156)
|++||||++++|++|||||||++||+.++..+.+.+.. .+++|+|++||+++.+. .||+|++|+ +|++++
T Consensus 157 rv~laral~~~p~llllDEPtsgLD~~~~~~l~~~l~~~~~~~tii~isH~~~~i~~~~d~v~~l~~~~~~~~~~G~i~~ 236 (261)
T PRK14263 157 RLCIARAIATEPEVLLLDEPCSALDPIATRRVEELMVELKKDYTIALVTHNMQQAIRVADTTAFFSVDISQGTRTGYLVE 236 (261)
T ss_pred HHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHHhCCEEEEEecccccccCCceEEE
Confidence 99999999999999999999999999999998887654 34689999999999875 599999996 899999
Q ss_pred ccChHHHHhc
Q 037346 560 AGKYSDILNS 569 (1156)
Q Consensus 560 ~g~~~~l~~~ 569 (1156)
.|+++++.+.
T Consensus 237 ~g~~~~~~~~ 246 (261)
T PRK14263 237 MGPTAQIFQN 246 (261)
T ss_pred eCCHHHHHhC
Confidence 9999988753
|
|
| >PRK15093 antimicrobial peptide ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.1e-36 Score=340.80 Aligned_cols=205 Identities=18% Similarity=0.297 Sum_probs=169.4
Q ss_pred cEEEeeeEEEeCCCC-CCCccccceEEeeCCeEEEEEcCCCCChHHHHHHHhCCCC----CCCcEEEEcC----------
Q 037346 357 AIEIIDGSFSWDFSS-PNPTLRNINLKVFHGMRVAVCGTVGSGKSSCLSCILGGVP----KESGIIRLCG---------- 421 (1156)
Q Consensus 357 ~i~~~~~~f~~~~~~-~~~~l~~i~l~i~~g~~~~ivG~~GsGKSTll~~i~g~~~----~~~G~i~~~g---------- 421 (1156)
.++++|++++|+... ...+++|+||+|++||+++|+|+||||||||+++|+|+.+ |++|+|.++|
T Consensus 3 ~L~v~~l~~~y~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTLl~~i~Gl~~~~~~~~~G~i~~~g~~i~~~~~~~ 82 (330)
T PRK15093 3 LLDIRNLTIEFKTSDGWVKAVDRVSMTLTEGEIRGLVGESGSGKSLIAKAICGVTKDNWRVTADRMRFDDIDLLRLSPRE 82 (330)
T ss_pred eEEEeeeEEEEeCCCCCEEEEeeeEEEECCCCEEEEECCCCCCHHHHHHHHHccCCCCCCCcceEEEECCEECCcCCHHH
Confidence 489999999996422 3469999999999999999999999999999999999986 5899999987
Q ss_pred -------eEEEEecCCcC---CCccHHHHhhcC---C----C-C-----CHHHHHHHHHHhCCchhhhhCCCCCcccccc
Q 037346 422 -------TKAYVAQSPWI---QSGKIEENILFG---K----E-M-----DRERYERVLEACSLKKDLEVLPFGDQTIIGE 478 (1156)
Q Consensus 422 -------~~~~v~Q~~~~---~~~ti~eni~~~---~----~-~-----~~~~~~~~~~~~~l~~~~~~~~~g~~t~v~~ 478 (1156)
.++||+|+|.. ...||.+|+.+. . . . ..++..++++.++|.+... ...+
T Consensus 83 ~~~~~~~~i~~v~Q~~~~~l~p~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~gL~~~~~--------~~~~ 154 (330)
T PRK15093 83 RRKLVGHNVSMIFQEPQSCLDPSERVGRQLMQNIPGWTYKGRWWQRFGWRKRRAIELLHRVGIKDHKD--------AMRS 154 (330)
T ss_pred HHHHhCCCEEEEecCcchhcCccccHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHCCCCChHH--------HHhC
Confidence 27899999963 245899998642 0 0 0 1235567778888864211 1134
Q ss_pred CCCCCCHHHHHHHHHHHhhccCCCeeeeeCCCCCcCHHHHHHHHHHHHh--c-CCCEEEEEccCCCccc-cCCEEEEEeC
Q 037346 479 RGINLSGGQKQRIQIARPLYQDADIFLLDDPFSPVDDHTGAHLFKFCWV--S-SSKTVIYATHQVEFLP-AADLILVIKD 554 (1156)
Q Consensus 479 ~g~~LSgGqkqRi~lAral~~~~~illlDep~s~lD~~~~~~i~~~~~~--~-~~~tvi~vtH~~~~~~-~~d~i~~l~~ 554 (1156)
...+|||||||||+|||||+.+|+++||||||++||+.++.++.+.+.. . .|.|+|+||||++.+. .||+|++|++
T Consensus 155 ~p~~LSgG~~QRv~iArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~g~tii~itHdl~~v~~~~dri~vm~~ 234 (330)
T PRK15093 155 FPYELTEGECQKVMIAIALANQPRLLIADEPTNAMEPTTQAQIFRLLTRLNQNNNTTILLISHDLQMLSQWADKINVLYC 234 (330)
T ss_pred CchhCCHHHHHHHHHHHHHHCCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEEEEC
Confidence 4578999999999999999999999999999999999999998876644 2 4899999999999986 5999999999
Q ss_pred CeEEEccChHHHHhc
Q 037346 555 GKITQAGKYSDILNS 569 (1156)
Q Consensus 555 G~i~~~g~~~~l~~~ 569 (1156)
|+|++.|+.+++.+.
T Consensus 235 G~ive~g~~~~i~~~ 249 (330)
T PRK15093 235 GQTVETAPSKELVTT 249 (330)
T ss_pred CEEEEECCHHHHHhC
Confidence 999999999998764
|
|
| >PRK15056 manganese/iron transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.7e-36 Score=332.42 Aligned_cols=198 Identities=28% Similarity=0.432 Sum_probs=166.2
Q ss_pred cEEEeeeEEEeCCCCCCCccccceEEeeCCeEEEEEcCCCCChHHHHHHHhCCCCCCCcEEEEcC----------eEEEE
Q 037346 357 AIEIIDGSFSWDFSSPNPTLRNINLKVFHGMRVAVCGTVGSGKSSCLSCILGGVPKESGIIRLCG----------TKAYV 426 (1156)
Q Consensus 357 ~i~~~~~~f~~~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKSTll~~i~g~~~~~~G~i~~~g----------~~~~v 426 (1156)
.++++|++++|+. ++++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++| .++|+
T Consensus 6 ~l~~~~l~~~~~~--~~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~i~~v 83 (272)
T PRK15056 6 GIVVNDVTVTWRN--GHTALRDASFTVPGGSIAALVGVNGSGKSTLFKALMGFVRLASGKISILGQPTRQALQKNLVAYV 83 (272)
T ss_pred eEEEEeEEEEecC--CcEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEhHHhhccceEEEe
Confidence 5899999999962 35799999999999999999999999999999999999999999999987 38999
Q ss_pred ecCCcC---CCccHHHHhhcCCC-----------CCHHHHHHHHHHhCCchhhhhCCCCCccccccCCCCCCHHHHHHHH
Q 037346 427 AQSPWI---QSGKIEENILFGKE-----------MDRERYERVLEACSLKKDLEVLPFGDQTIIGERGINLSGGQKQRIQ 492 (1156)
Q Consensus 427 ~Q~~~~---~~~ti~eni~~~~~-----------~~~~~~~~~~~~~~l~~~~~~~~~g~~t~v~~~g~~LSgGqkqRi~ 492 (1156)
+|+|.+ +..++++|+.++.. .++++.+++++.+++.+..+ ....+||||||||++
T Consensus 84 ~q~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~-----------~~~~~LSgG~~qrv~ 152 (272)
T PRK15056 84 PQSEEVDWSFPVLVEDVVMMGRYGHMGWLRRAKKRDRQIVTAALARVDMVEFRH-----------RQIGELSGGQKKRVF 152 (272)
T ss_pred ccccccccCCCcchhhheecccccccccccCCCHHHHHHHHHHHHHcCChhHhc-----------CCcccCCHHHHHHHH
Confidence 999864 34578999875421 11234556677777754432 345689999999999
Q ss_pred HHHhhccCCCeeeeeCCCCCcCHHHHHHHHHHHHh--cCCCEEEEEccCCCccc-cCCEEEEEeCCeEEEccChHHHHh
Q 037346 493 IARPLYQDADIFLLDDPFSPVDDHTGAHLFKFCWV--SSSKTVIYATHQVEFLP-AADLILVIKDGKITQAGKYSDILN 568 (1156)
Q Consensus 493 lAral~~~~~illlDep~s~lD~~~~~~i~~~~~~--~~~~tvi~vtH~~~~~~-~~d~i~~l~~G~i~~~g~~~~l~~ 568 (1156)
|||||+.+|+++||||||++||+.+.+.+.+.+.. .+|+|+|++||+++.+. .||+++++ +|++++.|+++++..
T Consensus 153 laraL~~~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~g~tviivsH~~~~~~~~~d~v~~~-~G~i~~~g~~~~~~~ 230 (272)
T PRK15056 153 LARAIAQQGQVILLDEPFTGVDVKTEARIISLLRELRDEGKTMLVSTHNLGSVTEFCDYTVMV-KGTVLASGPTETTFT 230 (272)
T ss_pred HHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEE-CCEEEeecCHHhccC
Confidence 99999999999999999999999999998876643 35889999999998875 59999877 899999999988753
|
|
| >PRK11701 phnK phosphonate C-P lyase system protein PhnK; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-35 Score=329.78 Aligned_cols=200 Identities=22% Similarity=0.358 Sum_probs=165.3
Q ss_pred cEEEeeeEEEeCCCCCCCccccceEEeeCCeEEEEEcCCCCChHHHHHHHhCCCCCCCcEEEEcCe--------------
Q 037346 357 AIEIIDGSFSWDFSSPNPTLRNINLKVFHGMRVAVCGTVGSGKSSCLSCILGGVPKESGIIRLCGT-------------- 422 (1156)
Q Consensus 357 ~i~~~~~~f~~~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKSTll~~i~g~~~~~~G~i~~~g~-------------- 422 (1156)
.++++|+++.|+ ++++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.
T Consensus 6 ~l~~~~l~~~~~---~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~i~~~~~~~ 82 (258)
T PRK11701 6 LLSVRGLTKLYG---PRKGCRDVSFDLYPGEVLGIVGESGSGKTTLLNALSARLAPDAGEVHYRMRDGQLRDLYALSEAE 82 (258)
T ss_pred eEEEeeeEEEcC---CceeeeeeeEEEeCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCccccccccccCCHHH
Confidence 589999999996 357999999999999999999999999999999999999999999998773
Q ss_pred --------EEEEecCCc--CC-CccHHHHhhcCC----CCC----HHHHHHHHHHhCCchhhhhCCCCCccccccCCCCC
Q 037346 423 --------KAYVAQSPW--IQ-SGKIEENILFGK----EMD----RERYERVLEACSLKKDLEVLPFGDQTIIGERGINL 483 (1156)
Q Consensus 423 --------~~~v~Q~~~--~~-~~ti~eni~~~~----~~~----~~~~~~~~~~~~l~~~~~~~~~g~~t~v~~~g~~L 483 (1156)
++|++|++. ++ ..|+.+|+.+.. ..+ .++..++++.+++.. +..++.+.+|
T Consensus 83 ~~~~~~~~i~~v~q~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~----------~~~~~~~~~L 152 (258)
T PRK11701 83 RRRLLRTEWGFVHQHPRDGLRMQVSAGGNIGERLMAVGARHYGDIRATAGDWLERVEIDA----------ARIDDLPTTF 152 (258)
T ss_pred HHHHhhcceEEEeeCcccccCccccHHHHHHHHHHHhccCcHHHHHHHHHHHHHHcCCCh----------hHHhCCCccC
Confidence 689999984 33 358899986421 111 122334444544432 2345667899
Q ss_pred CHHHHHHHHHHHhhccCCCeeeeeCCCCCcCHHHHHHHHHHHHh---cCCCEEEEEccCCCccc-cCCEEEEEeCCeEEE
Q 037346 484 SGGQKQRIQIARPLYQDADIFLLDDPFSPVDDHTGAHLFKFCWV---SSSKTVIYATHQVEFLP-AADLILVIKDGKITQ 559 (1156)
Q Consensus 484 SgGqkqRi~lAral~~~~~illlDep~s~lD~~~~~~i~~~~~~---~~~~tvi~vtH~~~~~~-~~d~i~~l~~G~i~~ 559 (1156)
|||||||++||||++.+|+++||||||++||+.+.+.+.+.+.. ..|.|+|++||+++.+. .||+|++|++|++++
T Consensus 153 S~Gq~qrl~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~isH~~~~~~~~~d~i~~l~~g~i~~ 232 (258)
T PRK11701 153 SGGMQQRLQIARNLVTHPRLVFMDEPTGGLDVSVQARLLDLLRGLVRELGLAVVIVTHDLAVARLLAHRLLVMKQGRVVE 232 (258)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHHHHHHhcCEEEEEECCEEEE
Confidence 99999999999999999999999999999999999988876543 23789999999999987 599999999999999
Q ss_pred ccChHHHHhc
Q 037346 560 AGKYSDILNS 569 (1156)
Q Consensus 560 ~g~~~~l~~~ 569 (1156)
.|+++++...
T Consensus 233 ~~~~~~~~~~ 242 (258)
T PRK11701 233 SGLTDQVLDD 242 (258)
T ss_pred eCCHHHHhcC
Confidence 9999887643
|
|
| >PRK14264 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-35 Score=336.15 Aligned_cols=203 Identities=25% Similarity=0.393 Sum_probs=170.5
Q ss_pred ccEEEeeeEEEeCCCCCCCccccceEEeeCCeEEEEEcCCCCChHHHHHHHhCCCC-----CCCcEEEEcC---------
Q 037346 356 TAIEIIDGSFSWDFSSPNPTLRNINLKVFHGMRVAVCGTVGSGKSSCLSCILGGVP-----KESGIIRLCG--------- 421 (1156)
Q Consensus 356 ~~i~~~~~~f~~~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKSTll~~i~g~~~-----~~~G~i~~~g--------- 421 (1156)
..++++|+++.|+ ++++|+|+||+|++||+++|+|+||||||||+++|+|+++ |++|+|.++|
T Consensus 44 ~~l~i~nl~~~~~---~~~iL~~is~~i~~Ge~~~IvG~nGsGKSTLl~~L~Gl~~~~~~~p~~G~I~i~g~~i~~~~~~ 120 (305)
T PRK14264 44 AKLSVEDLDVYYG---DDHALKGVSMDIPEKSVTALIGPSGCGKSTFLRCLNRMNDRIKAARIDGSVELDGQDIYQDGVN 120 (305)
T ss_pred ceEEEEEEEEEeC---CeeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEccccccc
Confidence 4689999999996 3579999999999999999999999999999999999986 6899999986
Q ss_pred ------eEEEEecCCcCCCccHHHHhhcCCCC--------------------CHHHHHHHHHHhCCchhhhhCCCCCccc
Q 037346 422 ------TKAYVAQSPWIQSGKIEENILFGKEM--------------------DRERYERVLEACSLKKDLEVLPFGDQTI 475 (1156)
Q Consensus 422 ------~~~~v~Q~~~~~~~ti~eni~~~~~~--------------------~~~~~~~~~~~~~l~~~~~~~~~g~~t~ 475 (1156)
.++|++|++.+++.|++||+.++... .+++..++++.+++...+ .+.
T Consensus 121 ~~~~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-------~~~ 193 (305)
T PRK14264 121 LVELRKRVGMVFQSPNPFPKSIRENISYGPRKHGDINTGLLARLLGRDDKDAEDELVERSLRQAALWDEV-------NDR 193 (305)
T ss_pred HHHHhhceEEEccCCccccccHHHHHHhHHhhcccccccccccccccCchHHHHHHHHHHHHHcCCchhh-------hHH
Confidence 26899999999889999999975311 123345566666664332 233
Q ss_pred cccCCCCCCHHHHHHHHHHHhhccCCCeeeeeCCCCCcCHHHHHHHHHHHHh-cCCCEEEEEccCCCccc-cCCEE-EEE
Q 037346 476 IGERGINLSGGQKQRIQIARPLYQDADIFLLDDPFSPVDDHTGAHLFKFCWV-SSSKTVIYATHQVEFLP-AADLI-LVI 552 (1156)
Q Consensus 476 v~~~g~~LSgGqkqRi~lAral~~~~~illlDep~s~lD~~~~~~i~~~~~~-~~~~tvi~vtH~~~~~~-~~d~i-~~l 552 (1156)
.+..+.+||||||||++|||||+++|++|||||||++||+.++..+.+.+.. .+++|+|++||+++.+. .||++ ++|
T Consensus 194 ~~~~~~~LSgGq~qrv~LAraL~~~p~lLLLDEPtsgLD~~~~~~l~~~L~~~~~~~tiiivtH~~~~i~~~~d~i~~~l 273 (305)
T PRK14264 194 LDDNALGLSGGQQQRLCIARCLAVDPEVILMDEPASALDPIATSKIEDLIEELAEEYTVVVVTHNMQQAARISDQTAVFL 273 (305)
T ss_pred hcCccccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhcCCEEEEEEcCHHHHHHhcCEEEEEe
Confidence 4567789999999999999999999999999999999999999988776644 33589999999999976 59997 577
Q ss_pred eCCeEEEccChHHHHh
Q 037346 553 KDGKITQAGKYSDILN 568 (1156)
Q Consensus 553 ~~G~i~~~g~~~~l~~ 568 (1156)
++|++++.|+++++.+
T Consensus 274 ~~G~i~~~g~~~~~~~ 289 (305)
T PRK14264 274 TGGELVEYDDTDKIFE 289 (305)
T ss_pred cCCEEEEeCCHHHHHh
Confidence 9999999999988764
|
|
| >PRK14241 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-35 Score=329.79 Aligned_cols=202 Identities=24% Similarity=0.341 Sum_probs=168.1
Q ss_pred cEEEeeeEEEeCCCCCCCccccceEEeeCCeEEEEEcCCCCChHHHHHHHhCCCCC-----CCcEEEEcC----------
Q 037346 357 AIEIIDGSFSWDFSSPNPTLRNINLKVFHGMRVAVCGTVGSGKSSCLSCILGGVPK-----ESGIIRLCG---------- 421 (1156)
Q Consensus 357 ~i~~~~~~f~~~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKSTll~~i~g~~~~-----~~G~i~~~g---------- 421 (1156)
.++++|++++|+ +.++|+|+||+|++||+++|+||||||||||+++|+|+++| ++|+|.++|
T Consensus 4 ~l~i~~v~~~~~---~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~laGl~~~~~~~~~~G~I~~~g~~~~~~~~~~ 80 (258)
T PRK14241 4 RIDVKDLNIYYG---SFHAVEDVNLNIEPRSVTAFIGPSGCGKSTVLRTLNRMHEVIPGARVEGEVLLDGEDLYGPGVDP 80 (258)
T ss_pred cEEEeeEEEEEC---CEeeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhccCCcccCCCcceEEEECCEeccccccCh
Confidence 489999999996 34799999999999999999999999999999999999974 699999977
Q ss_pred -----eEEEEecCCcCCC-ccHHHHhhcCCC----CC----HHHHHHHHHHhCCchhhhhCCCCCccccccCCCCCCHHH
Q 037346 422 -----TKAYVAQSPWIQS-GKIEENILFGKE----MD----RERYERVLEACSLKKDLEVLPFGDQTIIGERGINLSGGQ 487 (1156)
Q Consensus 422 -----~~~~v~Q~~~~~~-~ti~eni~~~~~----~~----~~~~~~~~~~~~l~~~~~~~~~g~~t~v~~~g~~LSgGq 487 (1156)
.++|++|++.++. .|++||+.++.. .. +++.+++++.+++...+. ......+.+|||||
T Consensus 81 ~~~~~~i~~~~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-------~~~~~~~~~LS~G~ 153 (258)
T PRK14241 81 VAVRRTIGMVFQRPNPFPTMSIRDNVVAGLKLNGVRNKKDLDELVEKSLRGANLWNEVK-------DRLDKPGGGLSGGQ 153 (258)
T ss_pred HHHhcceEEEccccccCCCCcHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCchhhh-------hHhhCCcccCCHHH
Confidence 2689999998876 599999986421 11 123455666666643221 12345667899999
Q ss_pred HHHHHHHHhhccCCCeeeeeCCCCCcCHHHHHHHHHHHHh-cCCCEEEEEccCCCccc-cCCEEEEEe------CCeEEE
Q 037346 488 KQRIQIARPLYQDADIFLLDDPFSPVDDHTGAHLFKFCWV-SSSKTVIYATHQVEFLP-AADLILVIK------DGKITQ 559 (1156)
Q Consensus 488 kqRi~lAral~~~~~illlDep~s~lD~~~~~~i~~~~~~-~~~~tvi~vtH~~~~~~-~~d~i~~l~------~G~i~~ 559 (1156)
|||++||||++.+|+++||||||++||+.++..+.+.+.. .+++|+|++||+++.+. .||+|++|+ +|++++
T Consensus 154 ~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tviivsH~~~~~~~~~d~i~~l~~~~~~~~g~i~~ 233 (258)
T PRK14241 154 QQRLCIARAIAVEPDVLLMDEPCSALDPISTLAIEDLINELKQDYTIVIVTHNMQQAARVSDQTAFFNLEATGKPGRLVE 233 (258)
T ss_pred HHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEecccCCCCceEEe
Confidence 9999999999999999999999999999999988776644 34689999999999875 599999996 899999
Q ss_pred ccChHHHHh
Q 037346 560 AGKYSDILN 568 (1156)
Q Consensus 560 ~g~~~~l~~ 568 (1156)
.|+++++..
T Consensus 234 ~~~~~~~~~ 242 (258)
T PRK14241 234 IDDTEKIFS 242 (258)
T ss_pred cCCHHHHHh
Confidence 999988864
|
|
| >PRK14266 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-35 Score=328.92 Aligned_cols=203 Identities=26% Similarity=0.378 Sum_probs=171.6
Q ss_pred cEEEeeeEEEeCCCCCCCccccceEEeeCCeEEEEEcCCCCChHHHHHHHhCCCC-----CCCcEEEEcC----------
Q 037346 357 AIEIIDGSFSWDFSSPNPTLRNINLKVFHGMRVAVCGTVGSGKSSCLSCILGGVP-----KESGIIRLCG---------- 421 (1156)
Q Consensus 357 ~i~~~~~~f~~~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKSTll~~i~g~~~-----~~~G~i~~~g---------- 421 (1156)
.++++|+++.|+ ++++|+|+||+|++||+++|+||||||||||+++|+|+.+ |++|+|.++|
T Consensus 3 ~l~~~~v~~~~~---~~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~i~~~~~~~ 79 (250)
T PRK14266 3 RIEVENLNTYFD---DAHILKNVNLDIPKNSVTALIGPSGCGKSTFIRTLNRMNDLIPGFRHEGHIYLDGVDIYDPAVDV 79 (250)
T ss_pred EEEEEeEEEEeC---CeEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhhccCCCCCCccEEEECCEEcccccccH
Confidence 478999999996 3579999999999999999999999999999999999864 4899999887
Q ss_pred -----eEEEEecCCcCCCccHHHHhhcCCC----CCH----HHHHHHHHHhCCchhhhhCCCCCccccccCCCCCCHHHH
Q 037346 422 -----TKAYVAQSPWIQSGKIEENILFGKE----MDR----ERYERVLEACSLKKDLEVLPFGDQTIIGERGINLSGGQK 488 (1156)
Q Consensus 422 -----~~~~v~Q~~~~~~~ti~eni~~~~~----~~~----~~~~~~~~~~~l~~~~~~~~~g~~t~v~~~g~~LSgGqk 488 (1156)
.++|+||+|++|+.|++||+.++.. .++ +++.+.++.+++.+.+.. ..++.+.+||||||
T Consensus 80 ~~~~~~i~~~~q~~~~~~~t~~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~-------~~~~~~~~LS~Gq~ 152 (250)
T PRK14266 80 VELRKKVGMVFQKPNPFPKSIFDNVAYGLRIHGEDDEDFIEERVEESLKAAALWDEVKD-------KLDKSALGLSGGQQ 152 (250)
T ss_pred HHHhhheEEEecCCccCcchHHHHHHhHHhhcCCCCHHHHHHHHHHHHHHcCCchhHHH-------HHhCCcccCCHHHH
Confidence 2699999999998999999987521 122 345566777777654432 13456789999999
Q ss_pred HHHHHHHhhccCCCeeeeeCCCCCcCHHHHHHHHHHHHh-cCCCEEEEEccCCCcccc-CCEEEEEeCCeEEEccChHHH
Q 037346 489 QRIQIARPLYQDADIFLLDDPFSPVDDHTGAHLFKFCWV-SSSKTVIYATHQVEFLPA-ADLILVIKDGKITQAGKYSDI 566 (1156)
Q Consensus 489 qRi~lAral~~~~~illlDep~s~lD~~~~~~i~~~~~~-~~~~tvi~vtH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l 566 (1156)
||++|||||+++|+++||||||++||+.+...+.+.+.. .++.|+|++||+++.+.. ||++++|++|++++.|+++++
T Consensus 153 qrv~laral~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~~~tiii~sh~~~~~~~~~~~i~~l~~G~i~~~g~~~~~ 232 (250)
T PRK14266 153 QRLCIARTIAVSPEVILMDEPCSALDPISTTKIEDLIHKLKEDYTIVIVTHNMQQATRVSKYTSFFLNGEIIESGLTDQI 232 (250)
T ss_pred HHHHHHHHHHcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCCeEEEEECCHHHHHhhcCEEEEEECCeEEEeCCHHHH
Confidence 999999999999999999999999999999988776644 357899999999998765 999999999999999999888
Q ss_pred Hhc
Q 037346 567 LNS 569 (1156)
Q Consensus 567 ~~~ 569 (1156)
...
T Consensus 233 ~~~ 235 (250)
T PRK14266 233 FIN 235 (250)
T ss_pred HhC
Confidence 643
|
|
| >PRK09473 oppD oligopeptide transporter ATP-binding component; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.3e-36 Score=339.22 Aligned_cols=207 Identities=20% Similarity=0.358 Sum_probs=169.2
Q ss_pred ccEEEeeeEEEeCCCC-CCCccccceEEeeCCeEEEEEcCCCCChHHHHHHHhCCCCCC---CcEEEEcC----------
Q 037346 356 TAIEIIDGSFSWDFSS-PNPTLRNINLKVFHGMRVAVCGTVGSGKSSCLSCILGGVPKE---SGIIRLCG---------- 421 (1156)
Q Consensus 356 ~~i~~~~~~f~~~~~~-~~~~l~~i~l~i~~g~~~~ivG~~GsGKSTll~~i~g~~~~~---~G~i~~~g---------- 421 (1156)
..++++|+++.|+... ...+++|+||+|++||+++|+|+||||||||+++|+|+++|. +|+|.++|
T Consensus 11 ~~L~i~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~~~l~Gl~~p~~~~sG~I~~~G~~i~~~~~~~ 90 (330)
T PRK09473 11 ALLDVKDLRVTFSTPDGDVTAVNDLNFSLRAGETLGIVGESGSGKSQTAFALMGLLAANGRIGGSATFNGREILNLPEKE 90 (330)
T ss_pred ceEEEeCeEEEEecCCCCEEEEeeeEEEEcCCCEEEEECCCCchHHHHHHHHHcCCCCCCCCCeEEEECCEECCcCCHHH
Confidence 4689999999996432 246999999999999999999999999999999999999996 99999987
Q ss_pred -------eEEEEecCCc--CC-CccHHHHhhcC----CCCCH----HHHHHHHHHhCCchhhhhCCCCCccccccCCCCC
Q 037346 422 -------TKAYVAQSPW--IQ-SGKIEENILFG----KEMDR----ERYERVLEACSLKKDLEVLPFGDQTIIGERGINL 483 (1156)
Q Consensus 422 -------~~~~v~Q~~~--~~-~~ti~eni~~~----~~~~~----~~~~~~~~~~~l~~~~~~~~~g~~t~v~~~g~~L 483 (1156)
.++||+|+|. +. ..|+.+|+... ...+. ++..+.++..+|.+ +. ..++..+.+|
T Consensus 91 ~~~~r~~~i~~v~Q~~~~~l~p~~~v~~~i~~~~~~~~~~~~~~~~~~~~~~L~~vgL~~-------~~-~~~~~~p~~L 162 (330)
T PRK09473 91 LNKLRAEQISMIFQDPMTSLNPYMRVGEQLMEVLMLHKGMSKAEAFEESVRMLDAVKMPE-------AR-KRMKMYPHEF 162 (330)
T ss_pred HHHHhcCCEEEEEcCchhhcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCC-------hH-HHhcCCcccC
Confidence 3799999983 43 35888877532 11222 23445555555532 11 2245677899
Q ss_pred CHHHHHHHHHHHhhccCCCeeeeeCCCCCcCHHHHHHHHHHHHh---cCCCEEEEEccCCCccc-cCCEEEEEeCCeEEE
Q 037346 484 SGGQKQRIQIARPLYQDADIFLLDDPFSPVDDHTGAHLFKFCWV---SSSKTVIYATHQVEFLP-AADLILVIKDGKITQ 559 (1156)
Q Consensus 484 SgGqkqRi~lAral~~~~~illlDep~s~lD~~~~~~i~~~~~~---~~~~tvi~vtH~~~~~~-~~d~i~~l~~G~i~~ 559 (1156)
||||||||+|||||+.+|+++|+||||++||+.++..+.+.+.. ..|.|+|+||||++.+. .||+|++|++|+|++
T Consensus 163 SgG~~QRv~IArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~g~til~iTHdl~~~~~~~Dri~vm~~G~ive 242 (330)
T PRK09473 163 SGGMRQRVMIAMALLCRPKLLIADEPTTALDVTVQAQIMTLLNELKREFNTAIIMITHDLGVVAGICDKVLVMYAGRTME 242 (330)
T ss_pred CHHHHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHHcCCEEEEEECCHHHHHHhCCEEEEEECCEEEE
Confidence 99999999999999999999999999999999999998876543 34889999999999986 599999999999999
Q ss_pred ccChHHHHhcC
Q 037346 560 AGKYSDILNSG 570 (1156)
Q Consensus 560 ~g~~~~l~~~~ 570 (1156)
.|+.+++.+..
T Consensus 243 ~g~~~~i~~~p 253 (330)
T PRK09473 243 YGNARDVFYQP 253 (330)
T ss_pred ECCHHHHHhCC
Confidence 99999998643
|
|
| >COG4598 HisP ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-36 Score=293.21 Aligned_cols=200 Identities=27% Similarity=0.424 Sum_probs=173.8
Q ss_pred ccEEEeeeEEEeCCCCCCCccccceEEeeCCeEEEEEcCCCCChHHHHHHHhCCCCCCCcEEEEcCe-------------
Q 037346 356 TAIEIIDGSFSWDFSSPNPTLRNINLKVFHGMRVAVCGTVGSGKSSCLSCILGGVPKESGIIRLCGT------------- 422 (1156)
Q Consensus 356 ~~i~~~~~~f~~~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKSTll~~i~g~~~~~~G~i~~~g~------------- 422 (1156)
..++++|+.+.|. +..+|+++|++.++|+.+.|+|.|||||||+|+||.=+-.|+.|.|.++|.
T Consensus 5 ~~l~v~dlHK~~G---~~eVLKGvSL~A~~GdVisIIGsSGSGKSTfLRCiN~LE~P~~G~I~v~geei~~k~~~~G~l~ 81 (256)
T COG4598 5 NALEVEDLHKRYG---EHEVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSAGSIRVNGEEIRLKRDKDGQLK 81 (256)
T ss_pred cceehhHHHhhcc---cchhhcceeeecCCCCEEEEecCCCCchhHHHHHHHhhcCCCCceEEECCeEEEeeeCCCCCee
Confidence 4689999999996 457999999999999999999999999999999999999999999999983
Q ss_pred -------------EEEEecCCcCCC-ccHHHHhhcC------CCC--CHHHHHHHHHHhCCchhhhhCCCCCccccccCC
Q 037346 423 -------------KAYVAQSPWIQS-GKIEENILFG------KEM--DRERYERVLEACSLKKDLEVLPFGDQTIIGERG 480 (1156)
Q Consensus 423 -------------~~~v~Q~~~~~~-~ti~eni~~~------~~~--~~~~~~~~~~~~~l~~~~~~~~~g~~t~v~~~g 480 (1156)
.++|+|+..+.+ .||.||+.-. .+- ..++.+..+...++.+.-+..|
T Consensus 82 ~ad~~q~~r~Rs~L~mVFQ~FNLWsHmtvLeNViEaPvhVLg~~k~ea~e~Ae~~L~kVGi~ek~~~YP----------- 150 (256)
T COG4598 82 PADKRQLQRLRTRLGMVFQHFNLWSHMTVLENVIEAPVHVLGVSKAEAIERAEKYLAKVGIAEKADAYP----------- 150 (256)
T ss_pred eCCHHHHHHHHHHhhHhhhhcchhHHHHHHHHHHhcchHhhcCCHHHHHHHHHHHHHHhCchhhhhcCc-----------
Confidence 379999988875 5999998743 222 2356667788888887666555
Q ss_pred CCCCHHHHHHHHHHHhhccCCCeeeeeCCCCCcCHHHHHHHHHHHHh--cCCCEEEEEccCCCcccc-CCEEEEEeCCeE
Q 037346 481 INLSGGQKQRIQIARPLYQDADIFLLDDPFSPVDDHTGAHLFKFCWV--SSSKTVIYATHQVEFLPA-ADLILVIKDGKI 557 (1156)
Q Consensus 481 ~~LSgGqkqRi~lAral~~~~~illlDep~s~lD~~~~~~i~~~~~~--~~~~tvi~vtH~~~~~~~-~d~i~~l~~G~i 557 (1156)
..|||||+||++|||||..+|+++|+|||||||||+-.-++.+.+.. ..|+|.++|||.+.+.+. +.+|+++.+|.|
T Consensus 151 ~~LSGGQQQR~aIARaLameP~vmLFDEPTSALDPElVgEVLkv~~~LAeEgrTMv~VTHEM~FAR~Vss~v~fLh~G~i 230 (256)
T COG4598 151 AHLSGGQQQRVAIARALAMEPEVMLFDEPTSALDPELVGEVLKVMQDLAEEGRTMVVVTHEMGFARDVSSHVIFLHQGKI 230 (256)
T ss_pred cccCchHHHHHHHHHHHhcCCceEeecCCcccCCHHHHHHHHHHHHHHHHhCCeEEEEeeehhHHHhhhhheEEeeccee
Confidence 68999999999999999999999999999999999987777665433 679999999999999986 899999999999
Q ss_pred EEccChHHHHhc
Q 037346 558 TQAGKYSDILNS 569 (1156)
Q Consensus 558 ~~~g~~~~l~~~ 569 (1156)
-++|+|+++..+
T Consensus 231 EE~G~P~qvf~n 242 (256)
T COG4598 231 EEEGPPEQVFGN 242 (256)
T ss_pred cccCChHHHhcC
Confidence 999999999854
|
|
| >PRK14255 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-35 Score=328.31 Aligned_cols=203 Identities=25% Similarity=0.335 Sum_probs=167.8
Q ss_pred cEEEeeeEEEeCCCCCCCccccceEEeeCCeEEEEEcCCCCChHHHHHHHhCCCC--C---CCcEEEEcCe---------
Q 037346 357 AIEIIDGSFSWDFSSPNPTLRNINLKVFHGMRVAVCGTVGSGKSSCLSCILGGVP--K---ESGIIRLCGT--------- 422 (1156)
Q Consensus 357 ~i~~~~~~f~~~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKSTll~~i~g~~~--~---~~G~i~~~g~--------- 422 (1156)
.++++|++++|+ ++++|+|+||+|++||+++|+|+||||||||+++|+|..+ | ++|+|.++|.
T Consensus 5 ~l~~~~l~~~~~---~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~ 81 (252)
T PRK14255 5 IITSSDVHLFYG---KFEALKGIDLDFNQNEITALIGPSGCGKSTYLRTLNRMNDLIPGVTITGNVSLRGQNIYAPNEDV 81 (252)
T ss_pred eEEEEeEEEEEC---CeeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCcccEEEEcCEEcccccccH
Confidence 589999999996 3579999999999999999999999999999999999875 4 5899998772
Q ss_pred ------EEEEecCCcCCCccHHHHhhcCCC----CC----HHHHHHHHHHhCCchhhhhCCCCCccccccCCCCCCHHHH
Q 037346 423 ------KAYVAQSPWIQSGKIEENILFGKE----MD----RERYERVLEACSLKKDLEVLPFGDQTIIGERGINLSGGQK 488 (1156)
Q Consensus 423 ------~~~v~Q~~~~~~~ti~eni~~~~~----~~----~~~~~~~~~~~~l~~~~~~~~~g~~t~v~~~g~~LSgGqk 488 (1156)
++|++|++.++..|++||+.++.. .. +++..+.++.+++...+. ......+.+||||||
T Consensus 82 ~~~~~~i~~~~q~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i~-------~~~~~~~~~LS~Gq~ 154 (252)
T PRK14255 82 VQLRKQVGMVFQQPNPFPFSIYENVIYGLRLAGVKDKAVLDEAVETSLKQAAIWDEVK-------DHLHESALSLSGGQQ 154 (252)
T ss_pred HHhcCeEEEEECCCccCCCcHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCccchh-------hHHhcCcccCCHHHH
Confidence 689999999888999999986521 11 123344455555532221 223456679999999
Q ss_pred HHHHHHHhhccCCCeeeeeCCCCCcCHHHHHHHHHHHHh-cCCCEEEEEccCCCccc-cCCEEEEEeCCeEEEccChHHH
Q 037346 489 QRIQIARPLYQDADIFLLDDPFSPVDDHTGAHLFKFCWV-SSSKTVIYATHQVEFLP-AADLILVIKDGKITQAGKYSDI 566 (1156)
Q Consensus 489 qRi~lAral~~~~~illlDep~s~lD~~~~~~i~~~~~~-~~~~tvi~vtH~~~~~~-~~d~i~~l~~G~i~~~g~~~~l 566 (1156)
||++||||++.+|+++||||||++||+.+++.+.+.+.. .++.|+|++||+++.+. .||+|++|++|++++.|+..++
T Consensus 155 qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~vsH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~ 234 (252)
T PRK14255 155 QRVCIARVLAVKPDVILLDEPTSALDPISSTQIENMLLELRDQYTIILVTHSMHQASRISDKTAFFLTGNLIEFADTKQM 234 (252)
T ss_pred HHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHhCCEEEEEECCHHHHHHhCCEEEEEECCEEEEeCCHHHH
Confidence 999999999999999999999999999999998876644 33589999999999986 5999999999999999998887
Q ss_pred Hhc
Q 037346 567 LNS 569 (1156)
Q Consensus 567 ~~~ 569 (1156)
...
T Consensus 235 ~~~ 237 (252)
T PRK14255 235 FLN 237 (252)
T ss_pred hcC
Confidence 643
|
|
| >cd03299 ABC_ModC_like Archeal protein closely related to ModC | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-35 Score=324.84 Aligned_cols=196 Identities=31% Similarity=0.424 Sum_probs=168.3
Q ss_pred EEEeeeEEEeCCCCCCCccccceEEeeCCeEEEEEcCCCCChHHHHHHHhCCCCCCCcEEEEcC-----------eEEEE
Q 037346 358 IEIIDGSFSWDFSSPNPTLRNINLKVFHGMRVAVCGTVGSGKSSCLSCILGGVPKESGIIRLCG-----------TKAYV 426 (1156)
Q Consensus 358 i~~~~~~f~~~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKSTll~~i~g~~~~~~G~i~~~g-----------~~~~v 426 (1156)
|+++|+++.|+ + ++|+|+||+|++||+++|+|+||||||||+++|+|.++|++|+|.++| .++|+
T Consensus 1 l~~~~l~~~~~---~-~~l~~is~~i~~Ge~~~i~G~nG~GKStLl~~l~G~~~p~~G~v~i~g~~~~~~~~~~~~i~~~ 76 (235)
T cd03299 1 LKVENLSKDWK---E-FKLKNVSLEVERGDYFVILGPTGSGKSVLLETIAGFIKPDSGKILLNGKDITNLPPEKRDISYV 76 (235)
T ss_pred CeeEeEEEEeC---C-ceeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCEEcCcCChhHcCEEEE
Confidence 46899999996 2 379999999999999999999999999999999999999999999988 37999
Q ss_pred ecCCcCCC-ccHHHHhhcCCCC-------CHHHHHHHHHHhCCchhhhhCCCCCccccccCCCCCCHHHHHHHHHHHhhc
Q 037346 427 AQSPWIQS-GKIEENILFGKEM-------DRERYERVLEACSLKKDLEVLPFGDQTIIGERGINLSGGQKQRIQIARPLY 498 (1156)
Q Consensus 427 ~Q~~~~~~-~ti~eni~~~~~~-------~~~~~~~~~~~~~l~~~~~~~~~g~~t~v~~~g~~LSgGqkqRi~lAral~ 498 (1156)
+|++.++. .|+.||+.++... ..++..+.++.+++.+.+. +...+||||||||++||||++
T Consensus 77 ~q~~~~~~~~t~~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-----------~~~~~LS~G~~qrl~laral~ 145 (235)
T cd03299 77 PQNYALFPHMTVYKNIAYGLKKRKVDKKEIERKVLEIAEMLGIDHLLN-----------RKPETLSGGEQQRVAIARALV 145 (235)
T ss_pred eecCccCCCccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhHHh-----------cCcccCCHHHHHHHHHHHHHH
Confidence 99998875 6999999875321 1234456677777765544 344689999999999999999
Q ss_pred cCCCeeeeeCCCCCcCHHHHHHHHHHHHh---cCCCEEEEEccCCCccc-cCCEEEEEeCCeEEEccChHHHHh
Q 037346 499 QDADIFLLDDPFSPVDDHTGAHLFKFCWV---SSSKTVIYATHQVEFLP-AADLILVIKDGKITQAGKYSDILN 568 (1156)
Q Consensus 499 ~~~~illlDep~s~lD~~~~~~i~~~~~~---~~~~tvi~vtH~~~~~~-~~d~i~~l~~G~i~~~g~~~~l~~ 568 (1156)
.+|++++|||||++||+.+++++.+.+.. ..++|+|++||+++.+. .||++++|++|++++.|+++++.+
T Consensus 146 ~~p~llllDEPt~gLD~~~~~~l~~~l~~~~~~~~~tili~tH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~ 219 (235)
T cd03299 146 VNPKILLLDEPFSALDVRTKEKLREELKKIRKEFGVTVLHVTHDFEEAWALADKVAIMLNGKLIQVGKPEEVFK 219 (235)
T ss_pred cCCCEEEECCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEECCEEEEecCHHHHHh
Confidence 99999999999999999999998876643 23899999999999876 599999999999999999887764
|
ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK14272 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-35 Score=328.56 Aligned_cols=203 Identities=26% Similarity=0.369 Sum_probs=166.4
Q ss_pred cEEEeeeEEEeCCCCCCCccccceEEeeCCeEEEEEcCCCCChHHHHHHHhCCCCCC-----CcEEEEcC----------
Q 037346 357 AIEIIDGSFSWDFSSPNPTLRNINLKVFHGMRVAVCGTVGSGKSSCLSCILGGVPKE-----SGIIRLCG---------- 421 (1156)
Q Consensus 357 ~i~~~~~~f~~~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKSTll~~i~g~~~~~-----~G~i~~~g---------- 421 (1156)
.++++|++++|+ ++++|+|+||+|++||+++|+||||||||||+++|+|+++|+ +|+|.++|
T Consensus 4 ~l~~~~l~~~~~---~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~~~ 80 (252)
T PRK14272 4 LLSAQDVNIYYG---DKQAVKNVNLDVQRGTVNALIGPSGCGKTTFLRAINRMHDLTPGARVTGRILLDGQDIYGPRVDP 80 (252)
T ss_pred EEEEeeeEEEEC---CEEeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCcCCCCceeEEECCEEcccCccCH
Confidence 488999999996 357999999999999999999999999999999999999874 79999876
Q ss_pred -----eEEEEecCCcCCC-ccHHHHhhcCCC---C-CHH----HHHHHHHHhCCchhhhhCCCCCccccccCCCCCCHHH
Q 037346 422 -----TKAYVAQSPWIQS-GKIEENILFGKE---M-DRE----RYERVLEACSLKKDLEVLPFGDQTIIGERGINLSGGQ 487 (1156)
Q Consensus 422 -----~~~~v~Q~~~~~~-~ti~eni~~~~~---~-~~~----~~~~~~~~~~l~~~~~~~~~g~~t~v~~~g~~LSgGq 487 (1156)
.++|++|++.++. .|+.||+.++.. . .++ +..+.++..++...+. ......+.+|||||
T Consensus 81 ~~~~~~i~~~~q~~~~~~~~t~~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~-------~~~~~~~~~LS~G~ 153 (252)
T PRK14272 81 VAMRRRVGMVFQKPNPFPTMSVFDNVVAGLKLAGIRDRDHLMEVAERSLRGAALWDEVK-------DRLKTPATGLSGGQ 153 (252)
T ss_pred HHhhceeEEEeccCccCcCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCcchhhh-------hhhcCCcccCCHHH
Confidence 2689999998887 499999986421 1 222 2223344444432221 11234567899999
Q ss_pred HHHHHHHHhhccCCCeeeeeCCCCCcCHHHHHHHHHHHHh-cCCCEEEEEccCCCccc-cCCEEEEEeCCeEEEccChHH
Q 037346 488 KQRIQIARPLYQDADIFLLDDPFSPVDDHTGAHLFKFCWV-SSSKTVIYATHQVEFLP-AADLILVIKDGKITQAGKYSD 565 (1156)
Q Consensus 488 kqRi~lAral~~~~~illlDep~s~lD~~~~~~i~~~~~~-~~~~tvi~vtH~~~~~~-~~d~i~~l~~G~i~~~g~~~~ 565 (1156)
|||++||||++++|+++||||||++||+.+++.+.+.+.. .+++|+|++||+++.+. .||+|++|++|++++.|++++
T Consensus 154 ~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~ 233 (252)
T PRK14272 154 QQRLCIARALAVEPEILLMDEPTSALDPASTARIEDLMTDLKKVTTIIIVTHNMHQAARVSDTTSFFLVGDLVEHGPTDQ 233 (252)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHH
Confidence 9999999999999999999999999999999988876644 34689999999999987 599999999999999999988
Q ss_pred HHhc
Q 037346 566 ILNS 569 (1156)
Q Consensus 566 l~~~ 569 (1156)
+...
T Consensus 234 ~~~~ 237 (252)
T PRK14272 234 LFTN 237 (252)
T ss_pred HHhC
Confidence 8653
|
|
| >PRK13547 hmuV hemin importer ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-35 Score=329.37 Aligned_cols=197 Identities=26% Similarity=0.349 Sum_probs=167.4
Q ss_pred EEEeeeEEEeCCCCCCCccccceEEeeCCeEEEEEcCCCCChHHHHHHHhCCCCCC--------CcEEEEcCe-------
Q 037346 358 IEIIDGSFSWDFSSPNPTLRNINLKVFHGMRVAVCGTVGSGKSSCLSCILGGVPKE--------SGIIRLCGT------- 422 (1156)
Q Consensus 358 i~~~~~~f~~~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKSTll~~i~g~~~~~--------~G~i~~~g~------- 422 (1156)
++++|++++|+ ++++|+|+||+|++|++++|+||||||||||+++|+|+++|+ +|+|.++|.
T Consensus 2 l~~~nl~~~~~---~~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~laG~~~p~~~~~~~~~~G~i~~~g~~~~~~~~ 78 (272)
T PRK13547 2 LTADHLHVARR---HRAILRDLSLRIEPGRVTALLGRNGAGKSTLLKALAGDLTGGGAPRGARVTGDVTLNGEPLAAIDA 78 (272)
T ss_pred eEEEEEEEEEC---CEeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCcccccccCCceEEEECCEEcccCCH
Confidence 78999999995 357999999999999999999999999999999999999998 999999883
Q ss_pred ------EEEEecCCc-CCCccHHHHhhcCCC-C----------CHHHHHHHHHHhCCchhhhhCCCCCccccccCCCCCC
Q 037346 423 ------KAYVAQSPW-IQSGKIEENILFGKE-M----------DRERYERVLEACSLKKDLEVLPFGDQTIIGERGINLS 484 (1156)
Q Consensus 423 ------~~~v~Q~~~-~~~~ti~eni~~~~~-~----------~~~~~~~~~~~~~l~~~~~~~~~g~~t~v~~~g~~LS 484 (1156)
++|++|++. ++..|++||+.++.. . +.++.+++++.+++.. ..+....+||
T Consensus 79 ~~~~~~~~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-----------~~~~~~~~LS 147 (272)
T PRK13547 79 PRLARLRAVLPQAAQPAFAFSAREIVLLGRYPHARRAGALTHRDGEIAWQALALAGATA-----------LVGRDVTTLS 147 (272)
T ss_pred HHHHhhcEEecccCCCCCCCcHHHHHhhcccccccccccCCHHHHHHHHHHHHHcCcHh-----------hhcCCcccCC
Confidence 589999985 567899999987531 1 1123455666666543 3345667999
Q ss_pred HHHHHHHHHHHhhc---------cCCCeeeeeCCCCCcCHHHHHHHHHHHHh--c-CCCEEEEEccCCCccc-cCCEEEE
Q 037346 485 GGQKQRIQIARPLY---------QDADIFLLDDPFSPVDDHTGAHLFKFCWV--S-SSKTVIYATHQVEFLP-AADLILV 551 (1156)
Q Consensus 485 gGqkqRi~lAral~---------~~~~illlDep~s~lD~~~~~~i~~~~~~--~-~~~tvi~vtH~~~~~~-~~d~i~~ 551 (1156)
||||||++|||||+ .+|+++||||||++||+.+.+.+.+.+.. . .++|+|++||+++.+. .||++++
T Consensus 148 gG~~qrv~laral~~~~~~~~~~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tviiisH~~~~~~~~~d~i~~ 227 (272)
T PRK13547 148 GGELARVQFARVLAQLWPPHDAAQPPRYLLLDEPTAALDLAHQHRLLDTVRRLARDWNLGVLAIVHDPNLAARHADRIAM 227 (272)
T ss_pred HHHHHHHHHHHHHhccccccccCCCCCEEEEcCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEE
Confidence 99999999999999 59999999999999999999998876643 2 3789999999999886 5999999
Q ss_pred EeCCeEEEccChHHHHh
Q 037346 552 IKDGKITQAGKYSDILN 568 (1156)
Q Consensus 552 l~~G~i~~~g~~~~l~~ 568 (1156)
|++|++++.|+.+++.+
T Consensus 228 l~~G~i~~~g~~~~~~~ 244 (272)
T PRK13547 228 LADGAIVAHGAPADVLT 244 (272)
T ss_pred EECCeEEEecCHHHHcC
Confidence 99999999999888764
|
|
| >COG4181 Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.6e-36 Score=289.10 Aligned_cols=192 Identities=29% Similarity=0.432 Sum_probs=168.6
Q ss_pred cEEEeeeEEEeCCC-CCCCccccceEEeeCCeEEEEEcCCCCChHHHHHHHhCCCCCCCcEEEEcC--------------
Q 037346 357 AIEIIDGSFSWDFS-SPNPTLRNINLKVFHGMRVAVCGTVGSGKSSCLSCILGGVPKESGIIRLCG-------------- 421 (1156)
Q Consensus 357 ~i~~~~~~f~~~~~-~~~~~l~~i~l~i~~g~~~~ivG~~GsGKSTll~~i~g~~~~~~G~i~~~g-------------- 421 (1156)
.|+++++++.-+.. .+..+|++++|.|++||.++||||||||||||+..++|+-.|++|+|.+.|
T Consensus 6 ii~~~~l~ktvg~~~~~l~IL~~V~L~v~~Ge~vaiVG~SGSGKSTLl~vlAGLd~~ssGeV~l~G~~L~~ldEd~rA~~ 85 (228)
T COG4181 6 IIEVHHLSKTVGQGEGELSILKGVELVVKRGETVAIVGPSGSGKSTLLAVLAGLDDPSSGEVRLLGQPLHKLDEDARAAL 85 (228)
T ss_pred eeehhhhhhhhcCCCcceeEeecceEEecCCceEEEEcCCCCcHHhHHHHHhcCCCCCCceEEEcCcchhhcCHHHHHHh
Confidence 57888888776543 235799999999999999999999999999999999999999999999987
Q ss_pred ---eEEEEecCCcC-CCccHHHHhhcCCCC-------CHHHHHHHHHHhCCchhhhhCCCCCccccccCCCCCCHHHHHH
Q 037346 422 ---TKAYVAQSPWI-QSGKIEENILFGKEM-------DRERYERVLEACSLKKDLEVLPFGDQTIIGERGINLSGGQKQR 490 (1156)
Q Consensus 422 ---~~~~v~Q~~~~-~~~ti~eni~~~~~~-------~~~~~~~~~~~~~l~~~~~~~~~g~~t~v~~~g~~LSgGqkqR 490 (1156)
++|+|+|...+ ++.|-.||+....+. ......+.+++.+|..-+..+| .+||||++||
T Consensus 86 R~~~vGfVFQSF~Lip~ltAlENV~lPleL~ge~~~~~~~~A~~lL~~vGLg~Rl~HyP-----------~qLSGGEQQR 154 (228)
T COG4181 86 RARHVGFVFQSFHLIPNLTALENVALPLELRGESSADSRAGAKALLEAVGLGKRLTHYP-----------AQLSGGEQQR 154 (228)
T ss_pred hccceeEEEEeeeccccchhhhhccchhhhcCCccccHHHHHHHHHHHhCcccccccCc-----------cccCchHHHH
Confidence 37999999875 678999999875432 2345677889999988777666 5899999999
Q ss_pred HHHHHhhccCCCeeeeeCCCCCcCHHHHHHHHHHHHh---cCCCEEEEEccCCCccccCCEEEEEeCCeEEE
Q 037346 491 IQIARPLYQDADIFLLDDPFSPVDDHTGAHLFKFCWV---SSSKTVIYATHQVEFLPAADLILVIKDGKITQ 559 (1156)
Q Consensus 491 i~lAral~~~~~illlDep~s~lD~~~~~~i~~~~~~---~~~~tvi~vtH~~~~~~~~d~i~~l~~G~i~~ 559 (1156)
|+||||+...|+||+-||||.+||..+.++|.+.++. ..|.|.|+||||+.....|||++-|++|++++
T Consensus 155 VAiARAfa~~P~vLfADEPTGNLD~~Tg~~iaDLlF~lnre~G~TlVlVTHD~~LA~Rc~R~~r~~~G~l~~ 226 (228)
T COG4181 155 VALARAFAGRPDVLFADEPTGNLDRATGDKIADLLFALNRERGTTLVLVTHDPQLAARCDRQLRLRSGRLVE 226 (228)
T ss_pred HHHHHHhcCCCCEEeccCCCCCcchhHHHHHHHHHHHHhhhcCceEEEEeCCHHHHHhhhheeeeecceecc
Confidence 9999999999999999999999999999999887764 56899999999999999999999999999975
|
|
| >COG4178 ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.1e-33 Score=326.44 Aligned_cols=259 Identities=22% Similarity=0.315 Sum_probs=218.6
Q ss_pred HhCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCC---CCccccccCC-----CCCCCccEE
Q 037346 288 LLGIPLESGMILSALTTFKILQEPIYYLPESISMMIQAKVPLDRIASFLCLEG---LQTDVLEKMP-----RGNSDTAIE 359 (1156)
Q Consensus 288 ~~~~~lt~~~~ft~l~~~~~l~~pl~~l~~~~~~~~~a~~s~~Ri~~fl~~~~---~~~~~~~~~~-----~~~~~~~i~ 359 (1156)
+..|.++.|.+..+-..|+.+...++.+...+..+.+-+++..|+.+|-+.-+ .+........ ....+..|.
T Consensus 315 ~f~g~i~~G~lmqa~~aF~~v~sslswfi~~~~~ia~~rA~~~Rl~~f~~ai~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 394 (604)
T COG4178 315 YFSGQITFGGLMQAVGAFGQVHSSLSWFIDNYDAIADWRATLLRLAEFRQALEAAQMDTEKPARTGRRIDFDDNADHGIT 394 (604)
T ss_pred hhcCcChHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhccCcccccCcccccccccccccceeE
Confidence 46788999999999999999999999999999999999999999999974321 1110000000 011146799
Q ss_pred EeeeEEEeCCCCCCCccccceEEeeCCeEEEEEcCCCCChHHHHHHHhCCCCCCCcEEEEcC--eEEEEecCCcCCCccH
Q 037346 360 IIDGSFSWDFSSPNPTLRNINLKVFHGMRVAVCGTVGSGKSSCLSCILGGVPKESGIIRLCG--TKAYVAQSPWIQSGKI 437 (1156)
Q Consensus 360 ~~~~~f~~~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKSTll~~i~g~~~~~~G~i~~~g--~~~~v~Q~~~~~~~ti 437 (1156)
++|++..-|. +.+.+++.||++++|+.+.|.||||||||||+++|+|+.|.-+|+|.... .+.|+||.|.++.||.
T Consensus 395 ~~nl~l~~p~--~~~ll~~l~~~v~~G~~llI~G~SG~GKTsLlRaiaGLWP~g~G~I~~P~~~~~lflpQ~PY~p~GtL 472 (604)
T COG4178 395 LENLSLRTPD--GQTLLSELNFEVRPGERLLITGESGAGKTSLLRALAGLWPWGSGRISMPADSALLFLPQRPYLPQGTL 472 (604)
T ss_pred EeeeeEECCC--CCeeeccceeeeCCCCEEEEECCCCCCHHHHHHHHhccCccCCCceecCCCCceEEecCCCCCCCccH
Confidence 9999999874 45889999999999999999999999999999999999999999998863 3799999999999999
Q ss_pred HHHhhcCCC---CCHHHHHHHHHHhCCchhhhhCCCCCccccccCCCCCCHHHHHHHHHHHhhccCCCeeeeeCCCCCcC
Q 037346 438 EENILFGKE---MDRERYERVLEACSLKKDLEVLPFGDQTIIGERGINLSGGQKQRIQIARPLYQDADIFLLDDPFSPVD 514 (1156)
Q Consensus 438 ~eni~~~~~---~~~~~~~~~~~~~~l~~~~~~~~~g~~t~v~~~g~~LSgGqkqRi~lAral~~~~~illlDep~s~lD 514 (1156)
||-|++... ++++.+.+++.+|+|.+..+++..-++ -...||||||||+++||.++++|++++|||.|||||
T Consensus 473 re~l~YP~~~~~~~d~~l~~vL~~vgL~~L~~rl~~~~~-----W~~vLS~GEqQRlafARilL~kP~~v~LDEATsALD 547 (604)
T COG4178 473 REALCYPNAAPDFSDAELVAVLHKVGLGDLAERLDEEDR-----WDRVLSGGEQQRLAFARLLLHKPKWVFLDEATSALD 547 (604)
T ss_pred HHHHhCCCCCCCCChHHHHHHHHHcCcHHHHHHHhccCc-----HhhhcChhHHHHHHHHHHHHcCCCEEEEecchhccC
Confidence 999999753 678999999999999998887654332 345799999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHh-cCCCEEEEEccCCCccccCCEEEEEe
Q 037346 515 DHTGAHLFKFCWV-SSSKTVIYATHQVEFLPAADLILVIK 553 (1156)
Q Consensus 515 ~~~~~~i~~~~~~-~~~~tvi~vtH~~~~~~~~d~i~~l~ 553 (1156)
+.++..+++.+.. +.+.|+|-|.|+.......++.+.+.
T Consensus 548 e~~e~~l~q~l~~~lp~~tvISV~Hr~tl~~~h~~~l~l~ 587 (604)
T COG4178 548 EETEDRLYQLLKEELPDATVISVGHRPTLWNFHSRQLELL 587 (604)
T ss_pred hHHHHHHHHHHHhhCCCCEEEEeccchhhHHHHhhheeec
Confidence 9999999987755 58999999999988877666655554
|
|
| >COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-36 Score=308.60 Aligned_cols=200 Identities=27% Similarity=0.436 Sum_probs=176.7
Q ss_pred CeEEEEEEEEEEcCCCCceeeCCCCCCHHHHHHHHhhcccCCCceEEEcCeeCCCCChHHHhhcCeeeccccccccc-cc
Q 037346 946 GEVNIRHLQVRYAPNLPLVLRGRTGSGKSTLIQTLFRIVESTAGHILIDGKDISLIGLHDLRTRLSIIPQDPTMFEG-TT 1024 (1156)
Q Consensus 946 g~I~~~~Vsf~Y~~~~~~vL~G~SGsGKSTL~~lL~rl~~p~~G~I~idG~di~~i~~~~LR~~i~~VpQdp~LF~g-TI 1024 (1156)
+...++||++...+++-.+|.|||||||||+++++.|+++|++|+|+|||.||++++...||++||||-|..-||.. ||
T Consensus 13 ~~~av~~v~l~I~~gef~vliGpSGsGKTTtLkMINrLiept~G~I~i~g~~i~~~d~~~LRr~IGYviQqigLFPh~Tv 92 (309)
T COG1125 13 NKKAVDDVNLTIEEGEFLVLIGPSGSGKTTTLKMINRLIEPTSGEILIDGEDISDLDPVELRRKIGYVIQQIGLFPHLTV 92 (309)
T ss_pred CceeeeeeeEEecCCeEEEEECCCCCcHHHHHHHHhcccCCCCceEEECCeecccCCHHHHHHhhhhhhhhcccCCCccH
Confidence 34578888888888888899999999999999999999999999999999999999999999999999999999964 99
Q ss_pred hhccCCCC---CCC----HHHHHHHHHHcCCC--hHHHhhcCCcccc-------ccccccCCCEEEEecCCcCCCHHHHH
Q 037346 1025 RSNLDPLE---EHA----DEQIWEALDKCQLG--DEVRKKKGKLDSQ-------GRVLLKKSKVLVLDEATASVDTATDN 1088 (1156)
Q Consensus 1025 r~Nl~~~~---~~~----deei~~al~~~~l~--~~i~~lp~gl~s~-------ARALLr~~~ILiLDEaTS~LD~~te~ 1088 (1156)
.+||..-. .++ ++++.+.++.+||. +|....|..|.-+ ||||..+|+||+||||.++||+.|..
T Consensus 93 ~eNIa~VP~L~~w~k~~i~~r~~ELl~lvgL~p~~~~~RyP~eLSGGQQQRVGv~RALAadP~ilLMDEPFgALDpI~R~ 172 (309)
T COG1125 93 AENIATVPKLLGWDKERIKKRADELLDLVGLDPSEYADRYPHELSGGQQQRVGVARALAADPPILLMDEPFGALDPITRK 172 (309)
T ss_pred HHHHHhhhhhcCCCHHHHHHHHHHHHHHhCCCHHHHhhcCchhcCcchhhHHHHHHHHhcCCCeEeecCCccccChhhHH
Confidence 99996422 222 46688999999997 4888888877655 89999999999999999999999999
Q ss_pred HHHHHHHHhcC--CceEEEeecCccc-ccccCEEEEEeCcEEeeecChhHHhcCCCChHH
Q 037346 1089 QIQQTLRQHFS--DCTVVTIAHRITS-VLDSAMVLLLNHGLIKEYDSPTKLLENKSSSFA 1145 (1156)
Q Consensus 1089 ~I~~~l~~~~~--~~TvI~IaHrl~t-i~~~D~I~Vl~~G~IvE~G~~~eLl~~~~g~f~ 1145 (1156)
.+|+-+.+.-+ ++|+|+|||+++. ++-+|||.||++|+|+.+|+|+++++++...|-
T Consensus 173 ~lQ~e~~~lq~~l~kTivfVTHDidEA~kLadri~vm~~G~i~Q~~~P~~il~~Pan~FV 232 (309)
T COG1125 173 QLQEEIKELQKELGKTIVFVTHDIDEALKLADRIAVMDAGEIVQYDTPDEILANPANDFV 232 (309)
T ss_pred HHHHHHHHHHHHhCCEEEEEecCHHHHHhhhceEEEecCCeEEEeCCHHHHHhCccHHHH
Confidence 99998876532 7899999999965 667999999999999999999999998765553
|
|
| >PRK10418 nikD nickel transporter ATP-binding protein NikD; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-35 Score=326.00 Aligned_cols=201 Identities=25% Similarity=0.377 Sum_probs=169.5
Q ss_pred cEEEeeeEEEeCCCCCCCccccceEEeeCCeEEEEEcCCCCChHHHHHHHhCCCCC----CCcEEEEcC-----------
Q 037346 357 AIEIIDGSFSWDFSSPNPTLRNINLKVFHGMRVAVCGTVGSGKSSCLSCILGGVPK----ESGIIRLCG----------- 421 (1156)
Q Consensus 357 ~i~~~~~~f~~~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKSTll~~i~g~~~~----~~G~i~~~g----------- 421 (1156)
.++++|++++|. +++|+|+||++++||+++|+|+||||||||+++|+|+++| ++|+|.++|
T Consensus 4 ~l~~~~l~~~~~----~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~~~G~i~~~g~~i~~~~~~~~ 79 (254)
T PRK10418 4 QIELRNIALQAA----QPLVHGVSLTLQRGRVLALVGGSGSGKSLTCAAALGILPAGVRQTAGRVLLDGKPVAPCALRGR 79 (254)
T ss_pred EEEEeCeEEEec----cceecceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCcCCEEEECCeeccccccccc
Confidence 489999999992 4699999999999999999999999999999999999999 999999987
Q ss_pred eEEEEecCCc-CCC--ccHHHHhhc-----CCCCCHHHHHHHHHHhCCchhhhhCCCCCccccccCCCCCCHHHHHHHHH
Q 037346 422 TKAYVAQSPW-IQS--GKIEENILF-----GKEMDRERYERVLEACSLKKDLEVLPFGDQTIIGERGINLSGGQKQRIQI 493 (1156)
Q Consensus 422 ~~~~v~Q~~~-~~~--~ti~eni~~-----~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~t~v~~~g~~LSgGqkqRi~l 493 (1156)
.++|++|+|. .+. .|+.+|+.+ +....++++.+.++.+++.+. .+.++..+.+||||||||++|
T Consensus 80 ~i~~v~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~--------~~~~~~~~~~LS~Gq~qrv~l 151 (254)
T PRK10418 80 KIATIMQNPRSAFNPLHTMHTHARETCLALGKPADDATLTAALEAVGLENA--------ARVLKLYPFEMSGGMLQRMMI 151 (254)
T ss_pred eEEEEecCCccccCccccHHHHHHHHHHHcCCChHHHHHHHHHHHcCCCCh--------hhhhhcCCcccCHHHHHHHHH
Confidence 3789999984 333 588888753 333334567777887777542 123456678999999999999
Q ss_pred HHhhccCCCeeeeeCCCCCcCHHHHHHHHHHHHh---cCCCEEEEEccCCCccc-cCCEEEEEeCCeEEEccChHHHHhc
Q 037346 494 ARPLYQDADIFLLDDPFSPVDDHTGAHLFKFCWV---SSSKTVIYATHQVEFLP-AADLILVIKDGKITQAGKYSDILNS 569 (1156)
Q Consensus 494 Aral~~~~~illlDep~s~lD~~~~~~i~~~~~~---~~~~tvi~vtH~~~~~~-~~d~i~~l~~G~i~~~g~~~~l~~~ 569 (1156)
||||+.+|+++||||||++||+.+++.+.+.+.. ..|.|+|++||+++.+. .||++++|++|++++.|+.+++.+.
T Consensus 152 aral~~~p~lLlLDEPt~~LD~~~~~~l~~~L~~~~~~~g~til~~sH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~~~~ 231 (254)
T PRK10418 152 ALALLCEAPFIIADEPTTDLDVVAQARILDLLESIVQKRALGMLLVTHDMGVVARLADDVAVMSHGRIVEQGDVETLFNA 231 (254)
T ss_pred HHHHhcCCCEEEEeCCCcccCHHHHHHHHHHHHHHHHhcCcEEEEEecCHHHHHHhCCEEEEEECCEEEEecCHHHHhhC
Confidence 9999999999999999999999999888776543 24789999999999985 5999999999999999999888653
|
|
| >PRK14258 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-35 Score=328.24 Aligned_cols=204 Identities=24% Similarity=0.408 Sum_probs=171.3
Q ss_pred ccEEEeeeEEEeCCCCCCCccccceEEeeCCeEEEEEcCCCCChHHHHHHHhCCCCCC-----CcEEEEcC---------
Q 037346 356 TAIEIIDGSFSWDFSSPNPTLRNINLKVFHGMRVAVCGTVGSGKSSCLSCILGGVPKE-----SGIIRLCG--------- 421 (1156)
Q Consensus 356 ~~i~~~~~~f~~~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKSTll~~i~g~~~~~-----~G~i~~~g--------- 421 (1156)
..++++|+++.|+ +..+|+|+||++++|++++|+|+||||||||+++|+|+++|+ +|+|.++|
T Consensus 6 ~~l~~~nl~~~~~---~~~il~~is~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~g~i~~~G~i~~~g~~i~~~~~~ 82 (261)
T PRK14258 6 PAIKVNNLSFYYD---TQKILEGVSMEIYQSKVTAIIGPSGCGKSTFLKCLNRMNELESEVRVEGRVEFFNQNIYERRVN 82 (261)
T ss_pred ceEEEeeEEEEeC---CeeEeeceEEEEcCCcEEEEECCCCCCHHHHHHHHhcccCCCCCccccceEEECCEEhhccccc
Confidence 3689999999996 346999999999999999999999999999999999999985 79888876
Q ss_pred ------eEEEEecCCcCCCccHHHHhhcCCC---C-C----HHHHHHHHHHhCCchhhhhCCCCCccccccCCCCCCHHH
Q 037346 422 ------TKAYVAQSPWIQSGKIEENILFGKE---M-D----RERYERVLEACSLKKDLEVLPFGDQTIIGERGINLSGGQ 487 (1156)
Q Consensus 422 ------~~~~v~Q~~~~~~~ti~eni~~~~~---~-~----~~~~~~~~~~~~l~~~~~~~~~g~~t~v~~~g~~LSgGq 487 (1156)
.++|++|++.++..|++||+.++.. . . .++..++++.+++.+.+.. ..++.+.+|||||
T Consensus 83 ~~~~~~~i~~~~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-------~~~~~~~~LSgGq 155 (261)
T PRK14258 83 LNRLRRQVSMVHPKPNLFPMSVYDNVAYGVKIVGWRPKLEIDDIVESALKDADLWDEIKH-------KIHKSALDLSGGQ 155 (261)
T ss_pred hHHhhccEEEEecCCccCcccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCcchhhh-------HhcCCcccCCHHH
Confidence 2689999998888999999986421 1 1 2334556667776443321 2345678999999
Q ss_pred HHHHHHHHhhccCCCeeeeeCCCCCcCHHHHHHHHHHHHh---cCCCEEEEEccCCCccc-cCCEEEEEeC-----CeEE
Q 037346 488 KQRIQIARPLYQDADIFLLDDPFSPVDDHTGAHLFKFCWV---SSSKTVIYATHQVEFLP-AADLILVIKD-----GKIT 558 (1156)
Q Consensus 488 kqRi~lAral~~~~~illlDep~s~lD~~~~~~i~~~~~~---~~~~tvi~vtH~~~~~~-~~d~i~~l~~-----G~i~ 558 (1156)
|||++||||++++|+++||||||++||+.+.+.+.+.+.. ..++|+|++||+++.+. .||+|++|++ |+++
T Consensus 156 ~qrv~laral~~~p~vllLDEP~~~LD~~~~~~l~~~l~~l~~~~~~tiiivsH~~~~i~~~~d~i~~l~~~~~~~G~i~ 235 (261)
T PRK14258 156 QQRLCIARALAVKPKVLLMDEPCFGLDPIASMKVESLIQSLRLRSELTMVIVSHNLHQVSRLSDFTAFFKGNENRIGQLV 235 (261)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEECCHHHHHHhcCEEEEEccCCCcCceEE
Confidence 9999999999999999999999999999999988876643 24899999999999886 5999999999 9999
Q ss_pred EccChHHHHhc
Q 037346 559 QAGKYSDILNS 569 (1156)
Q Consensus 559 ~~g~~~~l~~~ 569 (1156)
+.|+++++.+.
T Consensus 236 ~~~~~~~~~~~ 246 (261)
T PRK14258 236 EFGLTKKIFNS 246 (261)
T ss_pred EeCCHHHHHhC
Confidence 99999988653
|
|
| >cd03234 ABCG_White The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-35 Score=321.11 Aligned_cols=194 Identities=29% Similarity=0.414 Sum_probs=159.2
Q ss_pred cEEEeeeEEEeCCCC-CCCccccceEEeeCCeEEEEEcCCCCChHHHHHHHhCCCC---CCCcEEEEcCe----------
Q 037346 357 AIEIIDGSFSWDFSS-PNPTLRNINLKVFHGMRVAVCGTVGSGKSSCLSCILGGVP---KESGIIRLCGT---------- 422 (1156)
Q Consensus 357 ~i~~~~~~f~~~~~~-~~~~l~~i~l~i~~g~~~~ivG~~GsGKSTll~~i~g~~~---~~~G~i~~~g~---------- 422 (1156)
.++++|++|.|+..+ .+++|+|+||+|++||+++|+||||||||||+++|+|+++ |++|+|.++|.
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLlk~l~G~~~~~~~~~G~i~~~g~~~~~~~~~~~ 82 (226)
T cd03234 3 VLPWWDVGLKAKNWNKYARILNDVSLHVESGQVMAILGSSGSGKTTLLDAISGRVEGGGTTSGQILFNGQPRKPDQFQKC 82 (226)
T ss_pred cceeecceeeeecCccccccccCceEEEcCCeEEEEECCCCCCHHHHHHHHhCccCCCCCCceEEEECCEECChHHhccc
Confidence 367999999997532 3689999999999999999999999999999999999999 99999999883
Q ss_pred EEEEecCCcCCCc-cHHHHhhcCCCC------CHH----HHHH-HHHHhCCchhhhhCCCCCccccccCCCCCCHHHHHH
Q 037346 423 KAYVAQSPWIQSG-KIEENILFGKEM------DRE----RYER-VLEACSLKKDLEVLPFGDQTIIGERGINLSGGQKQR 490 (1156)
Q Consensus 423 ~~~v~Q~~~~~~~-ti~eni~~~~~~------~~~----~~~~-~~~~~~l~~~~~~~~~g~~t~v~~~g~~LSgGqkqR 490 (1156)
++|++|++.+++. |++||+.++... ..+ +..+ .++.+++. ....+...+||||||||
T Consensus 83 i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~-----------~~~~~~~~~LS~G~~qr 151 (226)
T cd03234 83 VAYVRQDDILLPGLTVRETLTYTAILRLPRKSSDAIRKKRVEDVLLRDLALT-----------RIGGNLVKGISGGERRR 151 (226)
T ss_pred EEEeCCCCccCcCCcHHHHHHHHHHhhcccccchHHHHHHHHHHHHHhhcch-----------hhhcccccCcCHHHHHH
Confidence 7999999988876 999999874211 111 1122 33333332 22234567899999999
Q ss_pred HHHHHhhccCCCeeeeeCCCCCcCHHHHHHHHHHHHh--cCCCEEEEEccCCC-cc-ccCCEEEEEeCCeEEEcc
Q 037346 491 IQIARPLYQDADIFLLDDPFSPVDDHTGAHLFKFCWV--SSSKTVIYATHQVE-FL-PAADLILVIKDGKITQAG 561 (1156)
Q Consensus 491 i~lAral~~~~~illlDep~s~lD~~~~~~i~~~~~~--~~~~tvi~vtH~~~-~~-~~~d~i~~l~~G~i~~~g 561 (1156)
++||||++.+|+++||||||++||+.+++.+.+.+.. .+++|+|++||++. .+ ..||++++|++|++++.|
T Consensus 152 l~laral~~~p~illlDEP~~gLD~~~~~~~~~~l~~~~~~~~tiii~sh~~~~~~~~~~d~i~~l~~G~i~~~g 226 (226)
T cd03234 152 VSIAVQLLWDPKVLILDEPTSGLDSFTALNLVSTLSQLARRNRIVILTIHQPRSDLFRLFDRILLLSSGEIVYSG 226 (226)
T ss_pred HHHHHHHHhCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCCHHHHHhCCEEEEEeCCEEEecC
Confidence 9999999999999999999999999999988876643 35789999999983 55 569999999999998765
|
The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in |
| >COG0411 LivG ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.1e-36 Score=310.22 Aligned_cols=200 Identities=26% Similarity=0.361 Sum_probs=172.3
Q ss_pred cEEEeeeEEEeCCCCCCCccccceEEeeCCeEEEEEcCCCCChHHHHHHHhCCCCCCCcEEEEcCe--------------
Q 037346 357 AIEIIDGSFSWDFSSPNPTLRNINLKVFHGMRVAVCGTVGSGKSSCLSCILGGVPKESGIIRLCGT-------------- 422 (1156)
Q Consensus 357 ~i~~~~~~f~~~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKSTll~~i~g~~~~~~G~i~~~g~-------------- 422 (1156)
.+++++++.+|. +-.+++|+||++++||+++|+|||||||||++|+|.|+|+|++|+|.++|+
T Consensus 4 lL~v~~l~k~FG---Gl~Al~~Vsl~v~~Gei~~LIGPNGAGKTTlfNlitG~~~P~~G~v~~~G~~it~l~p~~iar~G 80 (250)
T COG0411 4 LLEVRGLSKRFG---GLTAVNDVSLEVRPGEIVGLIGPNGAGKTTLFNLITGFYKPSSGTVIFRGRDITGLPPHRIARLG 80 (250)
T ss_pred eeeeccceeecC---CEEEEeceeEEEcCCeEEEEECCCCCCceeeeeeecccccCCCceEEECCcccCCCCHHHHHhcc
Confidence 467899999996 567999999999999999999999999999999999999999999999995
Q ss_pred EEEEecCCcCCCc-cHHHHhhcCCC-------------C------CHHHHHHHHHHhCCchhhhhCCCCCccccccCCCC
Q 037346 423 KAYVAQSPWIQSG-KIEENILFGKE-------------M------DRERYERVLEACSLKKDLEVLPFGDQTIIGERGIN 482 (1156)
Q Consensus 423 ~~~v~Q~~~~~~~-ti~eni~~~~~-------------~------~~~~~~~~~~~~~l~~~~~~~~~g~~t~v~~~g~~ 482 (1156)
++--+|.+-+|.+ ||.||+..+.. + ..++..+.++.++|.+.. ++...+
T Consensus 81 i~RTFQ~~rlF~~lTVlENv~va~~~~~~~~~~l~~~~~~~~e~~~~e~A~~~Le~vgL~~~a-----------~~~A~~ 149 (250)
T COG0411 81 IARTFQITRLFPGLTVLENVAVGAHARLGLSGLLGRPRARKEEREARERARELLEFVGLGELA-----------DRPAGN 149 (250)
T ss_pred ceeecccccccCCCcHHHHHHHHhhhhhhhhhhhccccchhhHHHHHHHHHHHHHHcCCchhh-----------cchhhc
Confidence 4788999998865 99999987621 1 123445567777776544 345568
Q ss_pred CCHHHHHHHHHHHhhccCCCeeeeeCCCCCcCHHHHHHHHHHHHh---cCCCEEEEEccCCCccc-cCCEEEEEeCCeEE
Q 037346 483 LSGGQKQRIQIARPLYQDADIFLLDDPFSPVDDHTGAHLFKFCWV---SSSKTVIYATHQVEFLP-AADLILVIKDGKIT 558 (1156)
Q Consensus 483 LSgGqkqRi~lAral~~~~~illlDep~s~lD~~~~~~i~~~~~~---~~~~tvi~vtH~~~~~~-~~d~i~~l~~G~i~ 558 (1156)
||+|||.|+.|||||+.+|++||||||.++|.+....++.+.+.. ..|.|+++|.||++.+. .||||+||+.|+++
T Consensus 150 LsyG~qR~LEIArALa~~P~lLLLDEPaAGln~~e~~~l~~~i~~i~~~~g~tillIEHdM~~Vm~l~dri~Vl~~G~~I 229 (250)
T COG0411 150 LSYGQQRRLEIARALATQPKLLLLDEPAAGLNPEETEELAELIRELRDRGGVTILLIEHDMKLVMGLADRIVVLNYGEVI 229 (250)
T ss_pred CChhHhHHHHHHHHHhcCCCEEEecCccCCCCHHHHHHHHHHHHHHHhcCCcEEEEEEeccHHHhhhccEEEeccCCcCc
Confidence 999999999999999999999999999999999999888876644 24689999999999975 59999999999999
Q ss_pred EccChHHHHhcC
Q 037346 559 QAGKYSDILNSG 570 (1156)
Q Consensus 559 ~~g~~~~l~~~~ 570 (1156)
.+|+|+++.++.
T Consensus 230 AeG~P~eV~~dp 241 (250)
T COG0411 230 AEGTPEEVRNNP 241 (250)
T ss_pred ccCCHHHHhcCH
Confidence 999999988653
|
|
| >TIGR02142 modC_ABC molybdenum ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-35 Score=341.23 Aligned_cols=192 Identities=26% Similarity=0.402 Sum_probs=163.9
Q ss_pred eeEEEeCCCCCCCccccceEEeeCCeEEEEEcCCCCChHHHHHHHhCCCCCCCcEEEEcCe-----------------EE
Q 037346 362 DGSFSWDFSSPNPTLRNINLKVFHGMRVAVCGTVGSGKSSCLSCILGGVPKESGIIRLCGT-----------------KA 424 (1156)
Q Consensus 362 ~~~f~~~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKSTll~~i~g~~~~~~G~i~~~g~-----------------~~ 424 (1156)
|++++|+. . .+ |+||++++||+++|+||||||||||+++|+|+++|++|+|.++|. ++
T Consensus 4 ~l~~~~~~---~-~~-~isl~i~~Gei~~l~G~nGsGKSTLl~~iaGl~~p~~G~I~~~g~~i~~~~~~~~~~~~~~~i~ 78 (354)
T TIGR02142 4 RFSKRLGD---F-SL-DADFTLPGQGVTAIFGRSGSGKTTLIRLIAGLTRPDEGEIVLNGRTLFDSRKGIFLPPEKRRIG 78 (354)
T ss_pred EEEEEECC---E-EE-EEEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECccCccccccchhhCCeE
Confidence 78899952 2 35 999999999999999999999999999999999999999998772 68
Q ss_pred EEecCCcCCC-ccHHHHhhcCCCC-C----HHHHHHHHHHhCCchhhhhCCCCCccccccCCCCCCHHHHHHHHHHHhhc
Q 037346 425 YVAQSPWIQS-GKIEENILFGKEM-D----RERYERVLEACSLKKDLEVLPFGDQTIIGERGINLSGGQKQRIQIARPLY 498 (1156)
Q Consensus 425 ~v~Q~~~~~~-~ti~eni~~~~~~-~----~~~~~~~~~~~~l~~~~~~~~~g~~t~v~~~g~~LSgGqkqRi~lAral~ 498 (1156)
|++|++.+|. .|++||+.|+... . .++.+++++.+++.+..+ ....+||||||||++|||||+
T Consensus 79 ~v~q~~~l~~~~tv~enl~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~-----------~~~~~LSgGqkqRvalAraL~ 147 (354)
T TIGR02142 79 YVFQEARLFPHLSVRGNLRYGMKRARPSERRISFERVIELLGIGHLLG-----------RLPGRLSGGEKQRVAIGRALL 147 (354)
T ss_pred EEecCCccCCCCcHHHHHHHHhhccChhHHHHHHHHHHHHcCChhHhc-----------CChhhCCHHHHHHHHHHHHHH
Confidence 9999999886 4999999986421 1 234566777777754443 445789999999999999999
Q ss_pred cCCCeeeeeCCCCCcCHHHHHHHHHHHHh--c-CCCEEEEEccCCCccc-cCCEEEEEeCCeEEEccChHHHHhc
Q 037346 499 QDADIFLLDDPFSPVDDHTGAHLFKFCWV--S-SSKTVIYATHQVEFLP-AADLILVIKDGKITQAGKYSDILNS 569 (1156)
Q Consensus 499 ~~~~illlDep~s~lD~~~~~~i~~~~~~--~-~~~tvi~vtH~~~~~~-~~d~i~~l~~G~i~~~g~~~~l~~~ 569 (1156)
.+|+++||||||++||+.+++.+.+.+.. . .|+|+|++||+++.+. .||+|++|++|++++.|+++++...
T Consensus 148 ~~p~lllLDEPts~LD~~~~~~l~~~L~~l~~~~g~tiiivtH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~ 222 (354)
T TIGR02142 148 SSPRLLLMDEPLAALDDPRKYEILPYLERLHAEFGIPILYVSHSLQEVLRLADRVVVLEDGRVAAAGPIAEVWAS 222 (354)
T ss_pred cCCCEEEEcCCCcCCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEeCCEEEEECCHHHHhcC
Confidence 99999999999999999999988876643 2 3789999999999875 5999999999999999999988754
|
This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter. |
| >PRK13546 teichoic acids export protein ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-35 Score=324.75 Aligned_cols=209 Identities=21% Similarity=0.301 Sum_probs=171.2
Q ss_pred cEEEeeeEEEeCCC-----------------CCCCccccceEEeeCCeEEEEEcCCCCChHHHHHHHhCCCCCCCcEEEE
Q 037346 357 AIEIIDGSFSWDFS-----------------SPNPTLRNINLKVFHGMRVAVCGTVGSGKSSCLSCILGGVPKESGIIRL 419 (1156)
Q Consensus 357 ~i~~~~~~f~~~~~-----------------~~~~~l~~i~l~i~~g~~~~ivG~~GsGKSTll~~i~g~~~~~~G~i~~ 419 (1156)
.|+++|++..|... ...++|+|+||+|++|++++|+||||||||||+++|+|+++|++|+|.+
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~is~~i~~Ge~~~liG~NGsGKSTLlk~L~Gl~~p~~G~I~~ 83 (264)
T PRK13546 4 SVNIKNVTKEYRIYRTNKERMKDALIPKHKNKTFFALDDISLKAYEGDVIGLVGINGSGKSTLSNIIGGSLSPTVGKVDR 83 (264)
T ss_pred eEEEeeeEEEEEecccchHHHHHHhhhhccCCceEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCceEEEE
Confidence 47788887777542 2345899999999999999999999999999999999999999999999
Q ss_pred cCeEEEEecCCcCCC-ccHHHHhhcCC---CCCHHH----HHHHHHHhCCchhhhhCCCCCccccccCCCCCCHHHHHHH
Q 037346 420 CGTKAYVAQSPWIQS-GKIEENILFGK---EMDRER----YERVLEACSLKKDLEVLPFGDQTIIGERGINLSGGQKQRI 491 (1156)
Q Consensus 420 ~g~~~~v~Q~~~~~~-~ti~eni~~~~---~~~~~~----~~~~~~~~~l~~~~~~~~~g~~t~v~~~g~~LSgGqkqRi 491 (1156)
+|.+++++|++.+.+ .|++||+.++. ..+.+. +..+++..++.+.+ ...+.+||||||||+
T Consensus 84 ~g~~~~~~~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-----------~~~~~~LS~Gq~qrv 152 (264)
T PRK13546 84 NGEVSVIAISAGLSGQLTGIENIEFKMLCMGFKRKEIKAMTPKIIEFSELGEFI-----------YQPVKKYSSGMRAKL 152 (264)
T ss_pred CCEEeEEecccCCCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhh-----------cCCcccCCHHHHHHH
Confidence 999999999987764 59999997642 223222 23344444554333 345678999999999
Q ss_pred HHHHhhccCCCeeeeeCCCCCcCHHHHHHHHHHHHh--cCCCEEEEEccCCCcccc-CCEEEEEeCCeEEEccChHHHHh
Q 037346 492 QIARPLYQDADIFLLDDPFSPVDDHTGAHLFKFCWV--SSSKTVIYATHQVEFLPA-ADLILVIKDGKITQAGKYSDILN 568 (1156)
Q Consensus 492 ~lAral~~~~~illlDep~s~lD~~~~~~i~~~~~~--~~~~tvi~vtH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~~ 568 (1156)
+||||++.+|++|||||||++||+.+.+.+.+.+.. ..|+|+|++||+++.+.. ||+|++|++|++++.|+++++..
T Consensus 153 ~Laral~~~p~iLlLDEPt~gLD~~~~~~l~~~L~~~~~~g~tiIiisH~~~~i~~~~d~i~~l~~G~i~~~g~~~~~~~ 232 (264)
T PRK13546 153 GFSINITVNPDILVIDEALSVGDQTFAQKCLDKIYEFKEQNKTIFFVSHNLGQVRQFCTKIAWIEGGKLKDYGELDDVLP 232 (264)
T ss_pred HHHHHHhhCCCEEEEeCccccCCHHHHHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHcCEEEEEECCEEEEeCCHHHHHH
Confidence 999999999999999999999999999888876643 458999999999998864 99999999999999999999887
Q ss_pred cCcchHHH
Q 037346 569 SGTDFMEL 576 (1156)
Q Consensus 569 ~~~~~~~~ 576 (1156)
...++.+.
T Consensus 233 ~~~~~~~~ 240 (264)
T PRK13546 233 KYEAFLND 240 (264)
T ss_pred HhHHHHHH
Confidence 54444433
|
|
| >PRK10419 nikE nickel transporter ATP-binding protein NikE; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-35 Score=327.85 Aligned_cols=208 Identities=23% Similarity=0.332 Sum_probs=170.3
Q ss_pred cEEEeeeEEEeCCC------CCCCccccceEEeeCCeEEEEEcCCCCChHHHHHHHhCCCCCCCcEEEEcCe--------
Q 037346 357 AIEIIDGSFSWDFS------SPNPTLRNINLKVFHGMRVAVCGTVGSGKSSCLSCILGGVPKESGIIRLCGT-------- 422 (1156)
Q Consensus 357 ~i~~~~~~f~~~~~------~~~~~l~~i~l~i~~g~~~~ivG~~GsGKSTll~~i~g~~~~~~G~i~~~g~-------- 422 (1156)
.|+++|++|.|+.. .++++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.
T Consensus 3 ~l~~~nl~~~~~~~~~~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~sG~i~~~g~~~~~~~~~ 82 (268)
T PRK10419 3 LLNVSGLSHHYAHGGLSGKHQHQTVLNNVSLSLKSGETVALLGRSGCGKSTLARLLVGLESPSQGNVSWRGEPLAKLNRA 82 (268)
T ss_pred eEEEeceEEEecCCccccccCceeeEeceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEeccccChh
Confidence 48899999999631 1357999999999999999999999999999999999999999999999873
Q ss_pred --------EEEEecCCc--CC-CccHHHHhhcCC----CCC----HHHHHHHHHHhCCchhhhhCCCCCccccccCCCCC
Q 037346 423 --------KAYVAQSPW--IQ-SGKIEENILFGK----EMD----RERYERVLEACSLKKDLEVLPFGDQTIIGERGINL 483 (1156)
Q Consensus 423 --------~~~v~Q~~~--~~-~~ti~eni~~~~----~~~----~~~~~~~~~~~~l~~~~~~~~~g~~t~v~~~g~~L 483 (1156)
++|++|++. ++ ..|+.||+.+.. ..+ .++.+++++.+++... ..+..+.+|
T Consensus 83 ~~~~~~~~i~~v~q~~~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~----------~~~~~~~~L 152 (268)
T PRK10419 83 QRKAFRRDIQMVFQDSISAVNPRKTVREIIREPLRHLLSLDKAERLARASEMLRAVDLDDS----------VLDKRPPQL 152 (268)
T ss_pred HHHHHHhcEEEEEcChhhccCCCCCHHHHHHHHHHhhccCCHHHHHHHHHHHHHHcCCChh----------HhhCCCccC
Confidence 689999983 33 469999986431 111 2245556666665421 123556789
Q ss_pred CHHHHHHHHHHHhhccCCCeeeeeCCCCCcCHHHHHHHHHHHHh---cCCCEEEEEccCCCccc-cCCEEEEEeCCeEEE
Q 037346 484 SGGQKQRIQIARPLYQDADIFLLDDPFSPVDDHTGAHLFKFCWV---SSSKTVIYATHQVEFLP-AADLILVIKDGKITQ 559 (1156)
Q Consensus 484 SgGqkqRi~lAral~~~~~illlDep~s~lD~~~~~~i~~~~~~---~~~~tvi~vtH~~~~~~-~~d~i~~l~~G~i~~ 559 (1156)
|||||||++|||||+.+|+++||||||++||+.+++.+.+.+.. ..+.|+|++||+++.+. .||++++|++|++++
T Consensus 153 S~Ge~qrl~laral~~~p~lllLDEPt~~LD~~~~~~~~~~l~~~~~~~~~tiiivsH~~~~i~~~~d~i~~l~~G~i~~ 232 (268)
T PRK10419 153 SGGQLQRVCLARALAVEPKLLILDEAVSNLDLVLQAGVIRLLKKLQQQFGTACLFITHDLRLVERFCQRVMVMDNGQIVE 232 (268)
T ss_pred ChHHHHHHHHHHHHhcCCCEEEEeCCCcccCHHHHHHHHHHHHHHHHHcCcEEEEEECCHHHHHHhCCEEEEEECCEEee
Confidence 99999999999999999999999999999999999888776543 23789999999999987 599999999999999
Q ss_pred ccChHHHHhcCcchH
Q 037346 560 AGKYSDILNSGTDFM 574 (1156)
Q Consensus 560 ~g~~~~l~~~~~~~~ 574 (1156)
.|+++++......+.
T Consensus 233 ~g~~~~~~~~~~~~~ 247 (268)
T PRK10419 233 TQPVGDKLTFSSPAG 247 (268)
T ss_pred eCChhhccCCCCHHH
Confidence 999998875444443
|
|
| >TIGR02982 heterocyst_DevA ABC exporter ATP-binding subunit, DevA family | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-35 Score=319.96 Aligned_cols=189 Identities=31% Similarity=0.457 Sum_probs=161.0
Q ss_pred EEEeeeEEEeCCCC-CCCccccceEEeeCCeEEEEEcCCCCChHHHHHHHhCCCCCCCcEEEEcCe--------------
Q 037346 358 IEIIDGSFSWDFSS-PNPTLRNINLKVFHGMRVAVCGTVGSGKSSCLSCILGGVPKESGIIRLCGT-------------- 422 (1156)
Q Consensus 358 i~~~~~~f~~~~~~-~~~~l~~i~l~i~~g~~~~ivG~~GsGKSTll~~i~g~~~~~~G~i~~~g~-------------- 422 (1156)
++++|+++.|+... +..+|+|+||++++|++++|+|+||||||||+++|+|+++|++|+|.++|.
T Consensus 2 l~~~~l~~~~~~~~~~~~il~~vs~~i~~G~~~~I~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 81 (220)
T TIGR02982 2 ISIRNLNHYYGHGSLRKQVLFDINLEINPGEIVILTGPSGSGKTTLLTLIGGLRSVQEGSLKVLGQELYGASEKELVQLR 81 (220)
T ss_pred EEEEEEEEEccCCCcceeEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEhHhcCHhHHHHHH
Confidence 78999999996321 257999999999999999999999999999999999999999999999873
Q ss_pred --EEEEecCCcCCC-ccHHHHhhcCCC----CC----HHHHHHHHHHhCCchhhhhCCCCCccccccCCCCCCHHHHHHH
Q 037346 423 --KAYVAQSPWIQS-GKIEENILFGKE----MD----RERYERVLEACSLKKDLEVLPFGDQTIIGERGINLSGGQKQRI 491 (1156)
Q Consensus 423 --~~~v~Q~~~~~~-~ti~eni~~~~~----~~----~~~~~~~~~~~~l~~~~~~~~~g~~t~v~~~g~~LSgGqkqRi 491 (1156)
++|++|+|.++. .|+.||+.++.. .+ .+++.++++.+++.+.++. .+.+||||||||+
T Consensus 82 ~~i~~~~q~~~~~~~~t~~~n~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-----------~~~~lS~G~~qrv 150 (220)
T TIGR02982 82 RNIGYIFQAHNLLGFLTARQNVQMALELQPNLSYQEARERARAMLEAVGLGDHLDY-----------YPHNLSGGQKQRV 150 (220)
T ss_pred hheEEEcCChhhcCCCCHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCChhhhhc-----------ChhhCCHHHHHHH
Confidence 699999998876 699999986532 22 2345667777777655543 3468999999999
Q ss_pred HHHHhhccCCCeeeeeCCCCCcCHHHHHHHHHHHHh---cCCCEEEEEccCCCccccCCEEEEEeCCeE
Q 037346 492 QIARPLYQDADIFLLDDPFSPVDDHTGAHLFKFCWV---SSSKTVIYATHQVEFLPAADLILVIKDGKI 557 (1156)
Q Consensus 492 ~lAral~~~~~illlDep~s~lD~~~~~~i~~~~~~---~~~~tvi~vtH~~~~~~~~d~i~~l~~G~i 557 (1156)
+||||++.+|+++||||||++||+.+++.+.+.+.. .+++|+|++||+++....||+|++|++|++
T Consensus 151 ~laral~~~p~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~~sh~~~~~~~~d~v~~l~~g~~ 219 (220)
T TIGR02982 151 AIARALVHRPKLVLADEPTAALDSKSGRDVVELMQKLAREQGCTILIVTHDNRILDVADRIVHMEDGKL 219 (220)
T ss_pred HHHHHHhcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHhhCCEEEEEECCEE
Confidence 999999999999999999999999999988776533 248999999999987667999999999986
|
Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The DevBCA proteins are thought export of either heterocyst-specific glycolipids or an enzyme essential for formation of the laminated layer found in heterocysts. |
| >PRK14246 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.7e-35 Score=323.66 Aligned_cols=204 Identities=23% Similarity=0.336 Sum_probs=169.1
Q ss_pred ccEEEeeeEEEeCCCCCCCccccceEEeeCCeEEEEEcCCCCChHHHHHHHhCCCCCCCcEEEEcC--------------
Q 037346 356 TAIEIIDGSFSWDFSSPNPTLRNINLKVFHGMRVAVCGTVGSGKSSCLSCILGGVPKESGIIRLCG-------------- 421 (1156)
Q Consensus 356 ~~i~~~~~~f~~~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKSTll~~i~g~~~~~~G~i~~~g-------------- 421 (1156)
..+.++|++++|+ ++++|+|+||++++||+++|+|+||||||||+++|+|+++|++|+|.++|
T Consensus 9 ~~i~~~~~~~~~~---~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~iaG~~~~~~G~v~~~G~~~~~g~~~~~~~~ 85 (257)
T PRK14246 9 DVFNISRLYLYIN---DKAILKDITIKIPNNSIFGIMGPSGSGKSTLLKVLNRLIEIYDSKIKVDGKVLYFGKDIFQIDA 85 (257)
T ss_pred hheeeeeEEEecC---CceeEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCcCceeEcCEEEECCcccccCCH
Confidence 4699999999996 45799999999999999999999999999999999999999997776654
Q ss_pred -----eEEEEecCCcCCCc-cHHHHhhcCCC---C-CH----HHHHHHHHHhCCchhhhhCCCCCccccccCCCCCCHHH
Q 037346 422 -----TKAYVAQSPWIQSG-KIEENILFGKE---M-DR----ERYERVLEACSLKKDLEVLPFGDQTIIGERGINLSGGQ 487 (1156)
Q Consensus 422 -----~~~~v~Q~~~~~~~-ti~eni~~~~~---~-~~----~~~~~~~~~~~l~~~~~~~~~g~~t~v~~~g~~LSgGq 487 (1156)
.++|++|+|.++.+ |++||+.++.. . .+ ++..++++..++.+.+. ...++.+..|||||
T Consensus 86 ~~~~~~i~~~~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-------~~~~~~~~~LS~G~ 158 (257)
T PRK14246 86 IKLRKEVGMVFQQPNPFPHLSIYDNIAYPLKSHGIKEKREIKKIVEECLRKVGLWKEVY-------DRLNSPASQLSGGQ 158 (257)
T ss_pred HHHhcceEEEccCCccCCCCcHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCccch-------hhhcCCcccCCHHH
Confidence 26899999988865 99999987521 1 22 22344555556543221 12345677899999
Q ss_pred HHHHHHHHhhccCCCeeeeeCCCCCcCHHHHHHHHHHHHh-cCCCEEEEEccCCCccc-cCCEEEEEeCCeEEEccChHH
Q 037346 488 KQRIQIARPLYQDADIFLLDDPFSPVDDHTGAHLFKFCWV-SSSKTVIYATHQVEFLP-AADLILVIKDGKITQAGKYSD 565 (1156)
Q Consensus 488 kqRi~lAral~~~~~illlDep~s~lD~~~~~~i~~~~~~-~~~~tvi~vtH~~~~~~-~~d~i~~l~~G~i~~~g~~~~ 565 (1156)
|||++||||++.+|+++||||||++||+.+++.+.+.+.. .++.|+|++||+++.+. .||++++|++|++.+.|+.++
T Consensus 159 ~qrl~laral~~~P~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tiilvsh~~~~~~~~~d~v~~l~~g~i~~~g~~~~ 238 (257)
T PRK14246 159 QQRLTIARALALKPKVLLMDEPTSMIDIVNSQAIEKLITELKNEIAIVIVSHNPQQVARVADYVAFLYNGELVEWGSSNE 238 (257)
T ss_pred HHHHHHHHHHHcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCcEEEEEECCHHHHHHhCCEEEEEECCEEEEECCHHH
Confidence 9999999999999999999999999999999988776644 34689999999999985 599999999999999999998
Q ss_pred HHhc
Q 037346 566 ILNS 569 (1156)
Q Consensus 566 l~~~ 569 (1156)
+.+.
T Consensus 239 ~~~~ 242 (257)
T PRK14246 239 IFTS 242 (257)
T ss_pred HHhC
Confidence 8754
|
|
| >cd03297 ABC_ModC_molybdenum_transporter ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-35 Score=318.09 Aligned_cols=183 Identities=30% Similarity=0.418 Sum_probs=155.4
Q ss_pred eeEEEeCCCCCCCccccceEEeeCCeEEEEEcCCCCChHHHHHHHhCCCCCCCcEEEEcC-----------------eEE
Q 037346 362 DGSFSWDFSSPNPTLRNINLKVFHGMRVAVCGTVGSGKSSCLSCILGGVPKESGIIRLCG-----------------TKA 424 (1156)
Q Consensus 362 ~~~f~~~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKSTll~~i~g~~~~~~G~i~~~g-----------------~~~ 424 (1156)
|++++|+. ..+ |+||++++ |+++|+||||||||||+++|+|+++|++|+|.++| .++
T Consensus 5 ~l~~~~~~---~~~--~vsl~i~~-e~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~i~ 78 (214)
T cd03297 5 DIEKRLPD---FTL--KIDFDLNE-EVTGIFGASGAGKSTLLRCIAGLEKPDGGTIVLNGTVLFDSRKKINLPPQQRKIG 78 (214)
T ss_pred eeeEecCC---eee--CceEEEcc-eeEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEecccccchhhhhhHhhcEE
Confidence 89999963 334 99999999 99999999999999999999999999999999877 268
Q ss_pred EEecCCcCCC-ccHHHHhhcCCCC-----CHHHHHHHHHHhCCchhhhhCCCCCccccccCCCCCCHHHHHHHHHHHhhc
Q 037346 425 YVAQSPWIQS-GKIEENILFGKEM-----DRERYERVLEACSLKKDLEVLPFGDQTIIGERGINLSGGQKQRIQIARPLY 498 (1156)
Q Consensus 425 ~v~Q~~~~~~-~ti~eni~~~~~~-----~~~~~~~~~~~~~l~~~~~~~~~g~~t~v~~~g~~LSgGqkqRi~lAral~ 498 (1156)
|++|++.++. .|++||+.++... +++++.+.++.+++.... ...+.+||||||||++||||++
T Consensus 79 ~~~q~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-----------~~~~~~LS~G~~qrv~la~al~ 147 (214)
T cd03297 79 LVFQQYALFPHLNVRENLAFGLKRKRNREDRISVDELLDLLGLDHLL-----------NRYPAQLSGGEKQRVALARALA 147 (214)
T ss_pred EEecCCccCCCCCHHHHHHHHHhhCCHHHHHHHHHHHHHHcCCHhHh-----------hcCcccCCHHHHHHHHHHHHHh
Confidence 9999999885 5999999875321 223456667776665433 3456789999999999999999
Q ss_pred cCCCeeeeeCCCCCcCHHHHHHHHHHHHh--c-CCCEEEEEccCCCccc-cCCEEEEEeCCeEEEcc
Q 037346 499 QDADIFLLDDPFSPVDDHTGAHLFKFCWV--S-SSKTVIYATHQVEFLP-AADLILVIKDGKITQAG 561 (1156)
Q Consensus 499 ~~~~illlDep~s~lD~~~~~~i~~~~~~--~-~~~tvi~vtH~~~~~~-~~d~i~~l~~G~i~~~g 561 (1156)
.+|+++||||||++||+.+++.+.+.+.. . .|+|+|++||+++.+. .||++++|++|++++.|
T Consensus 148 ~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~g 214 (214)
T cd03297 148 AQPELLLLDEPFSALDRALRLQLLPELKQIKKNLNIPVIFVTHDLSEAEYLADRIVVMEDGRLQYIG 214 (214)
T ss_pred cCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCcEEEEEecCHHHHHHhcCEEEEEECCEEEecC
Confidence 99999999999999999999988876643 2 3789999999999885 59999999999998765
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-35 Score=340.67 Aligned_cols=205 Identities=23% Similarity=0.377 Sum_probs=174.1
Q ss_pred CccEEEeeeEEEeCCC--------CCCCccccceEEeeCCeEEEEEcCCCCChHHHHHHHhCCCCCCCcEEEEcCe----
Q 037346 355 DTAIEIIDGSFSWDFS--------SPNPTLRNINLKVFHGMRVAVCGTVGSGKSSCLSCILGGVPKESGIIRLCGT---- 422 (1156)
Q Consensus 355 ~~~i~~~~~~f~~~~~--------~~~~~l~~i~l~i~~g~~~~ivG~~GsGKSTll~~i~g~~~~~~G~i~~~g~---- 422 (1156)
...++++|+++.|... ....+++||||++++||+++|||+||||||||.++|+|+.+|++|+|.++|.
T Consensus 278 ~~ll~V~~l~k~y~~~~~~~~~~~~~~~Av~~VSf~l~~GE~lglVGeSGsGKSTlar~i~gL~~P~~G~i~~~g~~~~~ 357 (539)
T COG1123 278 EPLLSVRNLSKRYGSRKGLFVRERGEVKAVDDVSFDLREGETLGLVGESGSGKSTLARILAGLLPPSSGSIIFDGQDLDL 357 (539)
T ss_pred CceeEeeeeeeeeccccccccccccceeeeeeeeeEecCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEEeCccccc
Confidence 3468899999999842 2346899999999999999999999999999999999999999999999883
Q ss_pred -----------EEEEecCCcC---CCccHHHHhhcCC----CC----CHHHHHHHHHHhCCchhhhhCCCCCccccccCC
Q 037346 423 -----------KAYVAQSPWI---QSGKIEENILFGK----EM----DRERYERVLEACSLKKDLEVLPFGDQTIIGERG 480 (1156)
Q Consensus 423 -----------~~~v~Q~~~~---~~~ti~eni~~~~----~~----~~~~~~~~~~~~~l~~~~~~~~~g~~t~v~~~g 480 (1156)
+-+++|+|.- +..||+++|.-.. .. .+++..+.++..+|... ...+..
T Consensus 358 ~~~~~~~~r~~~QmvFQdp~~SLnPr~tV~~~i~epL~~~~~~~~~~~~~rv~~ll~~VgL~~~----------~l~ryP 427 (539)
T COG1123 358 TGGELRRLRRRIQMVFQDPYSSLNPRMTVGDILAEPLRIHGGGSGAERRARVAELLELVGLPPE----------FLDRYP 427 (539)
T ss_pred ccchhhhhhhheEEEEeCcccccCccccHHHHHHhHHhhhcccchHHHHHHHHHHHHHcCCCHH----------HHhcCc
Confidence 4689999963 4579999987432 11 12356666888888753 224556
Q ss_pred CCCCHHHHHHHHHHHhhccCCCeeeeeCCCCCcCHHHHHHHHHHHHh---cCCCEEEEEccCCCcccc-CCEEEEEeCCe
Q 037346 481 INLSGGQKQRIQIARPLYQDADIFLLDDPFSPVDDHTGAHLFKFCWV---SSSKTVIYATHQVEFLPA-ADLILVIKDGK 556 (1156)
Q Consensus 481 ~~LSgGqkqRi~lAral~~~~~illlDep~s~lD~~~~~~i~~~~~~---~~~~tvi~vtH~~~~~~~-~d~i~~l~~G~ 556 (1156)
.+|||||||||||||||..+|+++++|||||+||+.++..+.+.+.. .-|-|.|+||||+..++. ||+|++|++|+
T Consensus 428 ~elSGGQrQRvaIARALa~~P~lli~DEp~SaLDvsvqa~VlnLl~~lq~e~g~t~lfISHDl~vV~~i~drv~vm~~G~ 507 (539)
T COG1123 428 HELSGGQRQRVAIARALALEPKLLILDEPVSALDVSVQAQVLNLLKDLQEELGLTYLFISHDLAVVRYIADRVAVMYDGR 507 (539)
T ss_pred hhcCcchhHHHHHHHHHhcCCCEEEecCCccccCHHHHHHHHHHHHHHHHHhCCEEEEEeCCHHHHHhhCceEEEEECCe
Confidence 79999999999999999999999999999999999999999887644 458999999999999986 99999999999
Q ss_pred EEEccChHHHHhc
Q 037346 557 ITQAGKYSDILNS 569 (1156)
Q Consensus 557 i~~~g~~~~l~~~ 569 (1156)
|++.|+.+++.+.
T Consensus 508 iVE~G~~~~v~~~ 520 (539)
T COG1123 508 IVEEGPTEKVFEN 520 (539)
T ss_pred EEEeCCHHHHhcC
Confidence 9999998888865
|
|
| >cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-35 Score=306.41 Aligned_cols=157 Identities=29% Similarity=0.520 Sum_probs=143.1
Q ss_pred EEEeeeEEEeCCCCCCCccccceEEeeCCeEEEEEcCCCCChHHHHHHHhCCCCCCCcEEEEcCe------------EEE
Q 037346 358 IEIIDGSFSWDFSSPNPTLRNINLKVFHGMRVAVCGTVGSGKSSCLSCILGGVPKESGIIRLCGT------------KAY 425 (1156)
Q Consensus 358 i~~~~~~f~~~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKSTll~~i~g~~~~~~G~i~~~g~------------~~~ 425 (1156)
++++|+++.|+ +.++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|. ++|
T Consensus 1 l~~~~l~~~~~---~~~~l~~~~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~i~~ 77 (173)
T cd03230 1 IEVRNLSKRYG---KKTALDDISLTVEKGEIYGLLGPNGAGKTTLIKIILGLLKPDSGEIKVLGKDIKKEPEEVKRRIGY 77 (173)
T ss_pred CEEEEEEEEEC---CeeeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEcccchHhhhccEEE
Confidence 46899999996 246999999999999999999999999999999999999999999999873 689
Q ss_pred EecCCcCCCc-cHHHHhhcCCCCCHHHHHHHHHHhCCchhhhhCCCCCccccccCCCCCCHHHHHHHHHHHhhccCCCee
Q 037346 426 VAQSPWIQSG-KIEENILFGKEMDRERYERVLEACSLKKDLEVLPFGDQTIIGERGINLSGGQKQRIQIARPLYQDADIF 504 (1156)
Q Consensus 426 v~Q~~~~~~~-ti~eni~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~t~v~~~g~~LSgGqkqRi~lAral~~~~~il 504 (1156)
++|+|.++.+ |++||+. ||||||||++||||++.+|+++
T Consensus 78 ~~q~~~~~~~~tv~~~~~----------------------------------------LS~G~~qrv~laral~~~p~il 117 (173)
T cd03230 78 LPEEPSLYENLTVRENLK----------------------------------------LSGGMKQRLALAQALLHDPELL 117 (173)
T ss_pred EecCCccccCCcHHHHhh----------------------------------------cCHHHHHHHHHHHHHHcCCCEE
Confidence 9999988775 9999974 9999999999999999999999
Q ss_pred eeeCCCCCcCHHHHHHHHHHHHh--cCCCEEEEEccCCCccc-cCCEEEEEeCCeE
Q 037346 505 LLDDPFSPVDDHTGAHLFKFCWV--SSSKTVIYATHQVEFLP-AADLILVIKDGKI 557 (1156)
Q Consensus 505 llDep~s~lD~~~~~~i~~~~~~--~~~~tvi~vtH~~~~~~-~~d~i~~l~~G~i 557 (1156)
||||||++||+.+++.+.+.+.. .+|.|+|++||+.+.+. .||++++|++|++
T Consensus 118 llDEPt~~LD~~~~~~l~~~l~~~~~~g~tiii~th~~~~~~~~~d~i~~l~~g~i 173 (173)
T cd03230 118 ILDEPTSGLDPESRREFWELLRELKKEGKTILLSSHILEEAERLCDRVAILNNGRI 173 (173)
T ss_pred EEeCCccCCCHHHHHHHHHHHHHHHHCCCEEEEECCCHHHHHHhCCEEEEEeCCCC
Confidence 99999999999999998887644 34789999999999887 5999999999874
|
In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >COG1135 AbcC ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.8e-36 Score=315.39 Aligned_cols=203 Identities=23% Similarity=0.362 Sum_probs=178.2
Q ss_pred eEEEEEEEEEEcCCCCceeeCCCCCCHHHHHHHHhhcccCCCceEEEcCeeCCCCC---hHHHhhcCeeecccccccc-c
Q 037346 947 EVNIRHLQVRYAPNLPLVLRGRTGSGKSTLIQTLFRIVESTAGHILIDGKDISLIG---LHDLRTRLSIIPQDPTMFE-G 1022 (1156)
Q Consensus 947 ~I~~~~Vsf~Y~~~~~~vL~G~SGsGKSTL~~lL~rl~~p~~G~I~idG~di~~i~---~~~LR~~i~~VpQdp~LF~-g 1022 (1156)
...++|||+..++++-..+.|+||||||||++++-|+-+|++|+|.+||.|+..++ +..+|++||+|+|++.|++ -
T Consensus 19 ~~al~~vsL~I~~GeI~GIIG~SGAGKSTLiR~iN~Le~PtsG~v~v~G~di~~l~~~~Lr~~R~~IGMIFQhFnLLssr 98 (339)
T COG1135 19 VTALDDVSLEIPKGEIFGIIGYSGAGKSTLLRLINLLERPTSGSVFVDGQDLTALSEAELRQLRQKIGMIFQHFNLLSSR 98 (339)
T ss_pred eeeeccceEEEcCCcEEEEEcCCCCcHHHHHHHHhccCCCCCceEEEcCEecccCChHHHHHHHhhccEEeccccccccc
Confidence 46899999999999999999999999999999999999999999999998887776 5667789999999999997 6
Q ss_pred cchhccCCC---CCCC----HHHHHHHHHHcCCChHHHhhcCCcccc-------ccccccCCCEEEEecCCcCCCHHHHH
Q 037346 1023 TTRSNLDPL---EEHA----DEQIWEALDKCQLGDEVRKKKGKLDSQ-------GRVLLKKSKVLVLDEATASVDTATDN 1088 (1156)
Q Consensus 1023 TIr~Nl~~~---~~~~----deei~~al~~~~l~~~i~~lp~gl~s~-------ARALLr~~~ILiLDEaTS~LD~~te~ 1088 (1156)
|+.+|+.+- ...+ .+.+.+.|+.+||.|...+-|..|.-+ ||||..+|+||+.|||||+|||+|.+
T Consensus 99 TV~~NvA~PLeiag~~k~ei~~RV~elLelVgL~dk~~~yP~qLSGGQKQRVaIARALa~~P~iLL~DEaTSALDP~TT~ 178 (339)
T COG1135 99 TVFENVAFPLELAGVPKAEIKQRVAELLELVGLSDKADRYPAQLSGGQKQRVAIARALANNPKILLCDEATSALDPETTQ 178 (339)
T ss_pred hHHhhhhhhHhhcCCCHHHHHHHHHHHHHHcCChhhhccCchhcCcchhhHHHHHHHHhcCCCEEEecCccccCChHHHH
Confidence 999999752 1122 355789999999999999988888755 99999999999999999999999999
Q ss_pred HHHHHHHHhc--CCceEEEeecCcccccc-cCEEEEEeCcEEeeecChhHHhcCCCC-hHHHHHH
Q 037346 1089 QIQQTLRQHF--SDCTVVTIAHRITSVLD-SAMVLLLNHGLIKEYDSPTKLLENKSS-SFAQLVA 1149 (1156)
Q Consensus 1089 ~I~~~l~~~~--~~~TvI~IaHrl~ti~~-~D~I~Vl~~G~IvE~G~~~eLl~~~~g-~f~~l~~ 1149 (1156)
.|.+.|++.- -|-|+++|||-++.+++ ||||.||++|+|+|.|+-.++..++.. .=++++.
T Consensus 179 sIL~LL~~In~~lglTIvlITHEm~Vvk~ic~rVavm~~G~lvE~G~v~~vF~~Pk~~~t~~fi~ 243 (339)
T COG1135 179 SILELLKDINRELGLTIVLITHEMEVVKRICDRVAVLDQGRLVEEGTVSEVFANPKHAITQEFIG 243 (339)
T ss_pred HHHHHHHHHHHHcCCEEEEEechHHHHHHHhhhheEeeCCEEEEeccHHHhhcCcchHHHHHHHH
Confidence 9999988653 37799999999999987 999999999999999999999988754 3334444
|
|
| >COG4559 ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-35 Score=293.80 Aligned_cols=198 Identities=27% Similarity=0.406 Sum_probs=169.0
Q ss_pred EEEeeeEEEeCCCCCCCccccceEEeeCCeEEEEEcCCCCChHHHHHHHhCCCCCCCcEEEEcCe-------------EE
Q 037346 358 IEIIDGSFSWDFSSPNPTLRNINLKVFHGMRVAVCGTVGSGKSSCLSCILGGVPKESGIIRLCGT-------------KA 424 (1156)
Q Consensus 358 i~~~~~~f~~~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKSTll~~i~g~~~~~~G~i~~~g~-------------~~ 424 (1156)
|+.+|+|++-. ++.+|++++|++++||.++|+||||+||||||+.|.|++.|++|++.++|. -+
T Consensus 2 i~a~nls~~~~---Gr~ll~~vsl~~~pGev~ailGPNGAGKSTlLk~LsGel~p~~G~v~~~g~~l~~~~~~~lA~~ra 78 (259)
T COG4559 2 IRAENLSYSLA---GRRLLDGVSLDLRPGEVLAILGPNGAGKSTLLKALSGELSPDSGEVTLNGVPLNSWPPEELARHRA 78 (259)
T ss_pred eeeeeeEEEee---cceeccCcceeccCCcEEEEECCCCccHHHHHHHhhCccCCCCCeEeeCCcChhhCCHHHHHHHhh
Confidence 67889998875 568999999999999999999999999999999999999999999999984 38
Q ss_pred EEecCCcC-CCccHHHHhhcCCC-C--------CHHHHHHHHHHhCCchhhhhCCCCCccccccCCCCCCHHHHHHHHHH
Q 037346 425 YVAQSPWI-QSGKIEENILFGKE-M--------DRERYERVLEACSLKKDLEVLPFGDQTIIGERGINLSGGQKQRIQIA 494 (1156)
Q Consensus 425 ~v~Q~~~~-~~~ti~eni~~~~~-~--------~~~~~~~~~~~~~l~~~~~~~~~g~~t~v~~~g~~LSgGqkqRi~lA 494 (1156)
.+||+..+ |..||+|-+.+|+- . +.+-.++++.++++...- ++...+||||+||||.||
T Consensus 79 VlpQ~s~laFpFtv~eVV~mGr~p~~~g~~~~e~~~i~~~ala~~d~~~la-----------~R~y~~LSGGEqQRVqlA 147 (259)
T COG4559 79 VLPQNSSLAFPFTVQEVVQMGRIPHRSGREPEEDERIAAQALAATDLSGLA-----------GRDYRTLSGGEQQRVQLA 147 (259)
T ss_pred hcccCcccccceEHHHHHHhcccccccCCCchhhHHHHHHHHHHcChhhhh-----------ccchhhcCchHHHHHHHH
Confidence 99999865 89999999999852 1 122245667776665432 344568999999999999
Q ss_pred Hhhcc------CCCeeeeeCCCCCcCHHHHHHHHHHHHh--cCCCEEEEEccCCCccc-cCCEEEEEeCCeEEEccChHH
Q 037346 495 RPLYQ------DADIFLLDDPFSPVDDHTGAHLFKFCWV--SSSKTVIYATHQVEFLP-AADLILVIKDGKITQAGKYSD 565 (1156)
Q Consensus 495 ral~~------~~~illlDep~s~lD~~~~~~i~~~~~~--~~~~tvi~vtH~~~~~~-~~d~i~~l~~G~i~~~g~~~~ 565 (1156)
|.|.+ ++++|+||||||+||...+.++++.+.. ..|..|+.|-||++... +||+|++|.+|+++..|++++
T Consensus 148 RvLaQl~~~v~~~r~L~LDEPtsaLDi~HQ~~tl~laR~la~~g~~V~~VLHDLNLAA~YaDrivll~~Grv~a~g~p~~ 227 (259)
T COG4559 148 RVLAQLWPPVPSGRWLFLDEPTSALDIAHQHHTLRLARQLAREGGAVLAVLHDLNLAAQYADRIVLLHQGRVIASGSPQD 227 (259)
T ss_pred HHHHHccCCCCCCceEEecCCccccchHHHHHHHHHHHHHHhcCCcEEEEEccchHHHHhhheeeeeeCCeEeecCCHHH
Confidence 99986 4568999999999999999988886643 56789999999999975 699999999999999999999
Q ss_pred HHhc
Q 037346 566 ILNS 569 (1156)
Q Consensus 566 l~~~ 569 (1156)
.+..
T Consensus 228 vlt~ 231 (259)
T COG4559 228 VLTD 231 (259)
T ss_pred hcCH
Confidence 8764
|
|
| >TIGR02323 CP_lyasePhnK phosphonate C-P lyase system protein PhnK | Back alignment and domain information |
|---|
Probab=100.00 E-value=7e-35 Score=322.78 Aligned_cols=199 Identities=25% Similarity=0.366 Sum_probs=163.9
Q ss_pred cEEEeeeEEEeCCCCCCCccccceEEeeCCeEEEEEcCCCCChHHHHHHHhCCCCCCCcEEEEcC---------------
Q 037346 357 AIEIIDGSFSWDFSSPNPTLRNINLKVFHGMRVAVCGTVGSGKSSCLSCILGGVPKESGIIRLCG--------------- 421 (1156)
Q Consensus 357 ~i~~~~~~f~~~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKSTll~~i~g~~~~~~G~i~~~g--------------- 421 (1156)
.++++|+++.|+ +..+|+|+||+|++|++++|+||||||||||+++|+|+++|++|+|.++|
T Consensus 3 ~l~~~~l~~~~~---~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 79 (253)
T TIGR02323 3 LLQVSGLSKSYG---GGKGCRDVSFDLYPGEVLGIVGESGSGKSTLLGCLAGRLAPDHGTATYIMRSGAELELYQLSEAE 79 (253)
T ss_pred eEEEeeeEEEeC---CceEeecceEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEEecccccccccccCCHHH
Confidence 589999999996 34689999999999999999999999999999999999999999999875
Q ss_pred -------eEEEEecCCcC---CCccHHHHhhcC-----CC-C--CHHHHHHHHHHhCCchhhhhCCCCCccccccCCCCC
Q 037346 422 -------TKAYVAQSPWI---QSGKIEENILFG-----KE-M--DRERYERVLEACSLKKDLEVLPFGDQTIIGERGINL 483 (1156)
Q Consensus 422 -------~~~~v~Q~~~~---~~~ti~eni~~~-----~~-~--~~~~~~~~~~~~~l~~~~~~~~~g~~t~v~~~g~~L 483 (1156)
.++|++|+|.. +..|+.+|+.+. .. . .+++..+.++..++.. +..+..+.+|
T Consensus 80 ~~~~~~~~i~~~~q~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~----------~~~~~~~~~L 149 (253)
T TIGR02323 80 RRRLMRTEWGFVHQNPRDGLRMRVSAGANIGERLMAIGARHYGNIRAAAHDWLEEVEIDP----------TRIDDLPRAF 149 (253)
T ss_pred HHHhhhcceEEEEeCcccccCccccHHHHHHHHHHHhcccchHHHHHHHHHHHHHcCCCh----------hhhhcCchhc
Confidence 16899999842 345888888532 11 1 1223344455444431 2334567899
Q ss_pred CHHHHHHHHHHHhhccCCCeeeeeCCCCCcCHHHHHHHHHHHHh---cCCCEEEEEccCCCccc-cCCEEEEEeCCeEEE
Q 037346 484 SGGQKQRIQIARPLYQDADIFLLDDPFSPVDDHTGAHLFKFCWV---SSSKTVIYATHQVEFLP-AADLILVIKDGKITQ 559 (1156)
Q Consensus 484 SgGqkqRi~lAral~~~~~illlDep~s~lD~~~~~~i~~~~~~---~~~~tvi~vtH~~~~~~-~~d~i~~l~~G~i~~ 559 (1156)
|||||||++||||++.+|+++||||||++||+.+++.+.+.+.. ..|.|+|++||+++.+. .||++++|++|++++
T Consensus 150 SgG~~qrv~laral~~~p~vlllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~vsH~~~~~~~~~d~~~~l~~G~i~~ 229 (253)
T TIGR02323 150 SGGMQQRLQIARNLVTRPRLVFMDEPTGGLDVSVQARLLDLLRGLVRDLGLAVIIVTHDLGVARLLAQRLLVMQQGRVVE 229 (253)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEECCEEEE
Confidence 99999999999999999999999999999999999988876643 24789999999999987 599999999999999
Q ss_pred ccChHHHHh
Q 037346 560 AGKYSDILN 568 (1156)
Q Consensus 560 ~g~~~~l~~ 568 (1156)
.|+++++..
T Consensus 230 ~~~~~~~~~ 238 (253)
T TIGR02323 230 SGLTDQVLD 238 (253)
T ss_pred ECCHHHHhc
Confidence 999888764
|
Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se. |
| >cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR) | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.5e-35 Score=310.06 Aligned_cols=172 Identities=25% Similarity=0.415 Sum_probs=149.9
Q ss_pred cEEEeeeEEEeCCC---CCCCccccceEEeeCCeEEEEEcCCCCChHHHHHHHhCCC--CCCCcEEEEcCe---------
Q 037346 357 AIEIIDGSFSWDFS---SPNPTLRNINLKVFHGMRVAVCGTVGSGKSSCLSCILGGV--PKESGIIRLCGT--------- 422 (1156)
Q Consensus 357 ~i~~~~~~f~~~~~---~~~~~l~~i~l~i~~g~~~~ivG~~GsGKSTll~~i~g~~--~~~~G~i~~~g~--------- 422 (1156)
.++++|++|.|+.. .++++|+|+||++++||+++|+||||||||||+++|+|++ +|++|+|.++|.
T Consensus 3 ~l~~~~ls~~~~~~~~~~~~~~l~~~~~~i~~Ge~~~l~G~nGsGKStLl~~i~Gl~~~~~~~G~i~~~g~~~~~~~~~~ 82 (194)
T cd03213 3 TLSFRNLTVTVKSSPSKSGKQLLKNVSGKAKPGELTAIMGPSGAGKSTLLNALAGRRTGLGVSGEVLINGRPLDKRSFRK 82 (194)
T ss_pred EEEEEeeEEEEecCCCcccccceecceEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCceEEEECCEeCchHhhhh
Confidence 48899999999731 0257999999999999999999999999999999999999 999999999873
Q ss_pred -EEEEecCCcCCC-ccHHHHhhcCCCCCHHHHHHHHHHhCCchhhhhCCCCCccccccCCCCCCHHHHHHHHHHHhhccC
Q 037346 423 -KAYVAQSPWIQS-GKIEENILFGKEMDRERYERVLEACSLKKDLEVLPFGDQTIIGERGINLSGGQKQRIQIARPLYQD 500 (1156)
Q Consensus 423 -~~~v~Q~~~~~~-~ti~eni~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~t~v~~~g~~LSgGqkqRi~lAral~~~ 500 (1156)
++|++|++.++. .|++||+.++... ..||||||||++||||++.+
T Consensus 83 ~i~~~~q~~~~~~~~t~~~~i~~~~~~---------------------------------~~LS~G~~qrv~laral~~~ 129 (194)
T cd03213 83 IIGYVPQDDILHPTLTVRETLMFAAKL---------------------------------RGLSGGERKRVSIALELVSN 129 (194)
T ss_pred eEEEccCcccCCCCCcHHHHHHHHHHh---------------------------------ccCCHHHHHHHHHHHHHHcC
Confidence 689999998876 5999999653210 07999999999999999999
Q ss_pred CCeeeeeCCCCCcCHHHHHHHHHHHHh--cCCCEEEEEccCCC-ccc-cCCEEEEEeCCeEEEcc
Q 037346 501 ADIFLLDDPFSPVDDHTGAHLFKFCWV--SSSKTVIYATHQVE-FLP-AADLILVIKDGKITQAG 561 (1156)
Q Consensus 501 ~~illlDep~s~lD~~~~~~i~~~~~~--~~~~tvi~vtH~~~-~~~-~~d~i~~l~~G~i~~~g 561 (1156)
|+++||||||++||+.+++.+.+.+.. .+++|+|++||+++ .+. .||++++|++|++.+.|
T Consensus 130 p~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~~~~~~~d~v~~l~~G~i~~~~ 194 (194)
T cd03213 130 PSLLFLDEPTSGLDSSSALQVMSLLRRLADTGRTIICSIHQPSSEIFELFDKLLLLSQGRVIYFG 194 (194)
T ss_pred CCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEEecCchHHHHHhcCEEEEEeCCEEEecC
Confidence 999999999999999999988876644 35899999999997 454 59999999999998654
|
DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus. |
| >COG0444 DppD ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.1e-35 Score=315.70 Aligned_cols=203 Identities=25% Similarity=0.392 Sum_probs=167.4
Q ss_pred EEEeeeEEEeCCCC-CCCccccceEEeeCCeEEEEEcCCCCChHHHHHHHhCCCC-C----CCcEEEEcCe---------
Q 037346 358 IEIIDGSFSWDFSS-PNPTLRNINLKVFHGMRVAVCGTVGSGKSSCLSCILGGVP-K----ESGIIRLCGT--------- 422 (1156)
Q Consensus 358 i~~~~~~f~~~~~~-~~~~l~~i~l~i~~g~~~~ivG~~GsGKSTll~~i~g~~~-~----~~G~i~~~g~--------- 422 (1156)
++++|++..|.... ...+++|+||++++||++||||+|||||||+.++|+|+++ | .+|+|.++|+
T Consensus 2 L~v~nL~v~f~~~~g~v~av~~vs~~i~~GE~lgiVGESGsGKS~~~~aim~llp~~~~~i~~G~i~f~g~~l~~l~~~~ 81 (316)
T COG0444 2 LEVKNLSVSFPTDAGVVKAVDGVSFELKKGEILGIVGESGSGKSVLAKAIMGLLPKPNARIVGGEILFDGKDLLSLSEKE 81 (316)
T ss_pred ceEeeeEEEEecCCccEEEEeceeEEEcCCcEEEEEcCCCCCHHHHHHHHHhccCCCCCeEeeeEEEECCcccccCCHHH
Confidence 57899999887533 3579999999999999999999999999999999999998 3 5789999883
Q ss_pred --------EEEEecCCcC-CC--ccHHHHh----hcCCCC-----CHHHHHHHHHHhCCchh---hhhCCCCCccccccC
Q 037346 423 --------KAYVAQSPWI-QS--GKIEENI----LFGKEM-----DRERYERVLEACSLKKD---LEVLPFGDQTIIGER 479 (1156)
Q Consensus 423 --------~~~v~Q~~~~-~~--~ti~eni----~~~~~~-----~~~~~~~~~~~~~l~~~---~~~~~~g~~t~v~~~ 479 (1156)
|+|++|+|.. +| .||.+-+ ...... ..++..+.++..++.+. ++..|
T Consensus 82 ~~~iRG~~I~mIfQ~p~~sLnPv~~Ig~Qi~E~l~~h~~~~~~~ea~~~a~~~L~~Vgi~~~~~~~~~YP---------- 151 (316)
T COG0444 82 LRKIRGKEIAMIFQDPMTSLNPVMTIGDQIAEVLRLHGKGLSKKEAKERAIELLELVGIPDPERRLKSYP---------- 151 (316)
T ss_pred HHhhcCceEEEEEcCchhhcCChhhHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHcCCCCHHHHHhhCC----------
Confidence 7999999852 33 3555444 322211 13456677888888653 34444
Q ss_pred CCCCCHHHHHHHHHHHhhccCCCeeeeeCCCCCcCHHHHHHHHHHHHh---cCCCEEEEEccCCCcccc-CCEEEEEeCC
Q 037346 480 GINLSGGQKQRIQIARPLYQDADIFLLDDPFSPVDDHTGAHLFKFCWV---SSSKTVIYATHQVEFLPA-ADLILVIKDG 555 (1156)
Q Consensus 480 g~~LSgGqkqRi~lAral~~~~~illlDep~s~lD~~~~~~i~~~~~~---~~~~tvi~vtH~~~~~~~-~d~i~~l~~G 555 (1156)
.+|||||||||.||-||..+|+++|.||||+|||..++.+|.+.+.. ..|.|+|+||||+..+.. ||+|+||..|
T Consensus 152 -helSGGMrQRV~IAmala~~P~LlIADEPTTALDvt~QaqIl~Ll~~l~~e~~~aiilITHDl~vva~~aDri~VMYaG 230 (316)
T COG0444 152 -HELSGGMRQRVMIAMALALNPKLLIADEPTTALDVTVQAQILDLLKELQREKGTALILITHDLGVVAEIADRVAVMYAG 230 (316)
T ss_pred -cccCCcHHHHHHHHHHHhCCCCEEEeCCCcchhhHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcceEEEEECc
Confidence 69999999999999999999999999999999999999999886643 468999999999999864 9999999999
Q ss_pred eEEEccChHHHHhcCc
Q 037346 556 KITQAGKYSDILNSGT 571 (1156)
Q Consensus 556 ~i~~~g~~~~l~~~~~ 571 (1156)
+|+|.|+.+++++...
T Consensus 231 ~iVE~g~~~~i~~~P~ 246 (316)
T COG0444 231 RIVEEGPVEEIFKNPK 246 (316)
T ss_pred EEEEeCCHHHHhcCCC
Confidence 9999999999987543
|
|
| >PRK13545 tagH teichoic acids export protein ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.3e-35 Score=337.96 Aligned_cols=203 Identities=21% Similarity=0.253 Sum_probs=170.4
Q ss_pred ccEEEeeeEEEeCCCCCCCccccceEEeeCCeEEEEEcCCCCChHHHHHHHhCCCCCCCcEEEEcCeEEEEecCCcCCC-
Q 037346 356 TAIEIIDGSFSWDFSSPNPTLRNINLKVFHGMRVAVCGTVGSGKSSCLSCILGGVPKESGIIRLCGTKAYVAQSPWIQS- 434 (1156)
Q Consensus 356 ~~i~~~~~~f~~~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKSTll~~i~g~~~~~~G~i~~~g~~~~v~Q~~~~~~- 434 (1156)
..++++|++|.|+....+++|+|+||+|++|++++|+||||||||||+++|+|+++|++|+|.++|...++.+.+.++.
T Consensus 20 ~mL~lknL~~~~~~~~~~~IL~nVSfsI~~GEivgIiGpNGSGKSTLLkiLaGLl~P~sGeI~I~G~~~~i~~~~~l~~~ 99 (549)
T PRK13545 20 PFDKLKDLFFRSKDGEYHYALNNISFEVPEGEIVGIIGLNGSGKSTLSNLIAGVTMPNKGTVDIKGSAALIAISSGLNGQ 99 (549)
T ss_pred ceeEEEEEEEecCCCccceEEeeeEEEEeCCCEEEEEcCCCCCHHHHHHHHhCCCCCCceEEEECCEeeeEEeccccCCC
Confidence 3588999999997543357999999999999999999999999999999999999999999999998766666665544
Q ss_pred ccHHHHhhcCC---CCCHH----HHHHHHHHhCCchhhhhCCCCCccccccCCCCCCHHHHHHHHHHHhhccCCCeeeee
Q 037346 435 GKIEENILFGK---EMDRE----RYERVLEACSLKKDLEVLPFGDQTIIGERGINLSGGQKQRIQIARPLYQDADIFLLD 507 (1156)
Q Consensus 435 ~ti~eni~~~~---~~~~~----~~~~~~~~~~l~~~~~~~~~g~~t~v~~~g~~LSgGqkqRi~lAral~~~~~illlD 507 (1156)
.|++||+.++. ..+.+ +..++++.+++.+.+. ..+.+||||||||++|||||+.+|+++|||
T Consensus 100 lTV~EnL~l~~~~~~~~~~e~~e~i~elLe~lgL~~~ld-----------~~~~~LSGGQrQRVaLArAL~~~P~LLLLD 168 (549)
T PRK13545 100 LTGIENIELKGLMMGLTKEKIKEIIPEIIEFADIGKFIY-----------QPVKTYSSGMKSRLGFAISVHINPDILVID 168 (549)
T ss_pred CcHHHHHHhhhhhcCCCHHHHHHHHHHHHHHcCChhHhh-----------CCcccCCHHHHHHHHHHHHHHhCCCEEEEE
Confidence 59999998642 12222 3445667777755443 345789999999999999999999999999
Q ss_pred CCCCCcCHHHHHHHHHHHHh--cCCCEEEEEccCCCccc-cCCEEEEEeCCeEEEccChHHHHhc
Q 037346 508 DPFSPVDDHTGAHLFKFCWV--SSSKTVIYATHQVEFLP-AADLILVIKDGKITQAGKYSDILNS 569 (1156)
Q Consensus 508 ep~s~lD~~~~~~i~~~~~~--~~~~tvi~vtH~~~~~~-~~d~i~~l~~G~i~~~g~~~~l~~~ 569 (1156)
|||++||+.+++.+++.+.. ..|+|+|++||+++.+. .||++++|++|++++.|+++++...
T Consensus 169 EPTsgLD~~sr~~LlelL~el~~~G~TIIIVSHdl~~i~~l~DrIivL~~GkIv~~G~~~el~~~ 233 (549)
T PRK13545 169 EALSVGDQTFTKKCLDKMNEFKEQGKTIFFISHSLSQVKSFCTKALWLHYGQVKEYGDIKEVVDH 233 (549)
T ss_pred CCcccCCHHHHHHHHHHHHHHHhCCCEEEEEECCHHHHHHhCCEEEEEECCEEEEECCHHHHHhh
Confidence 99999999999988876643 35889999999999886 4999999999999999999988754
|
|
| >cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.2e-35 Score=311.05 Aligned_cols=178 Identities=24% Similarity=0.271 Sum_probs=150.0
Q ss_pred cEEEeeeEEEeCCC-CCCCccccceEEeeCCeEEEEEcCCCCChHHHHHHHhCCCC---CCCcEEEEcCe----------
Q 037346 357 AIEIIDGSFSWDFS-SPNPTLRNINLKVFHGMRVAVCGTVGSGKSSCLSCILGGVP---KESGIIRLCGT---------- 422 (1156)
Q Consensus 357 ~i~~~~~~f~~~~~-~~~~~l~~i~l~i~~g~~~~ivG~~GsGKSTll~~i~g~~~---~~~G~i~~~g~---------- 422 (1156)
.+.++|++|.|+.. +++++|+|+||+|++||+++|+||||||||||+++|+|+++ |++|+|.++|.
T Consensus 3 ~~~~~~~~~~~~~~~~~~~il~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~~~~G~i~i~g~~~~~~~~~~~ 82 (202)
T cd03233 3 TLSWRNISFTTGKGRSKIPILKDFSGVVKPGEMVLVLGRPGSGCSTLLKALANRTEGNVSVEGDIHYNGIPYKEFAEKYP 82 (202)
T ss_pred eEEEEccEEEeccCCCCceeeeeEEEEECCCcEEEEECCCCCCHHHHHHHhcccCCCCCCcceEEEECCEECccchhhhc
Confidence 37899999999854 35679999999999999999999999999999999999999 89999999883
Q ss_pred --EEEEecCCcCCC-ccHHHHhhcCCCCCHHHHHHHHHHhCCchhhhhCCCCCccccccCCCCCCHHHHHHHHHHHhhcc
Q 037346 423 --KAYVAQSPWIQS-GKIEENILFGKEMDRERYERVLEACSLKKDLEVLPFGDQTIIGERGINLSGGQKQRIQIARPLYQ 499 (1156)
Q Consensus 423 --~~~v~Q~~~~~~-~ti~eni~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~t~v~~~g~~LSgGqkqRi~lAral~~ 499 (1156)
++|++|++.++. .|++||+.++.... ..+....||||||||++||||+++
T Consensus 83 ~~i~~~~q~~~~~~~~tv~~~l~~~~~~~---------------------------~~~~~~~LS~Ge~qrl~laral~~ 135 (202)
T cd03233 83 GEIIYVSEEDVHFPTLTVRETLDFALRCK---------------------------GNEFVRGISGGERKRVSIAEALVS 135 (202)
T ss_pred ceEEEEecccccCCCCcHHHHHhhhhhhc---------------------------cccchhhCCHHHHHHHHHHHHHhh
Confidence 689999998776 59999998753210 123456899999999999999999
Q ss_pred CCCeeeeeCCCCCcCHHHHHHHHHHHHh--cC-CCEEEEEccC-CCcc-ccCCEEEEEeCCeEEEcc
Q 037346 500 DADIFLLDDPFSPVDDHTGAHLFKFCWV--SS-SKTVIYATHQ-VEFL-PAADLILVIKDGKITQAG 561 (1156)
Q Consensus 500 ~~~illlDep~s~lD~~~~~~i~~~~~~--~~-~~tvi~vtH~-~~~~-~~~d~i~~l~~G~i~~~g 561 (1156)
+|+++||||||++||+.+++.+.+.+.. .+ +.|+|+++|+ .+.+ ..||++++|++|++++.|
T Consensus 136 ~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~~t~ii~~~h~~~~~~~~~d~i~~l~~G~i~~~g 202 (202)
T cd03233 136 RASVLCWDNSTRGLDSSTALEILKCIRTMADVLKTTTFVSLYQASDEIYDLFDKVLVLYEGRQIYYG 202 (202)
T ss_pred CCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEEcCCHHHHHHhCCeEEEEECCEEEecC
Confidence 9999999999999999999988876644 22 5676766554 5665 469999999999998754
|
PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.5e-35 Score=309.07 Aligned_cols=172 Identities=25% Similarity=0.357 Sum_probs=149.5
Q ss_pred cEEEeeeEEEeCCCC-CCCccccceEEeeCCeEEEEEcCCCCChHHHHHHHhCCC--CCCCcEEEEcC---------eEE
Q 037346 357 AIEIIDGSFSWDFSS-PNPTLRNINLKVFHGMRVAVCGTVGSGKSSCLSCILGGV--PKESGIIRLCG---------TKA 424 (1156)
Q Consensus 357 ~i~~~~~~f~~~~~~-~~~~l~~i~l~i~~g~~~~ivG~~GsGKSTll~~i~g~~--~~~~G~i~~~g---------~~~ 424 (1156)
.++++|+++.|+... ++++|+|+||++++||+++|+||||||||||+++|+|.+ +|++|+|.++| .++
T Consensus 3 ~l~~~~l~~~~~~~~~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~~~G~i~~~g~~~~~~~~~~i~ 82 (192)
T cd03232 3 VLTWKNLNYTVPVKGGKRQLLNNISGYVKPGTLTALMGESGAGKTTLLDVLAGRKTAGVITGEILINGRPLDKNFQRSTG 82 (192)
T ss_pred EEEEeeeEEEecCCCCceEeEEccEEEEeCCcEEEEECCCCCCHHHHHHHHhCCCcCCCcceEEEECCEehHHHhhhceE
Confidence 488999999996321 257999999999999999999999999999999999986 48999999987 368
Q ss_pred EEecCCcCCC-ccHHHHhhcCCCCCHHHHHHHHHHhCCchhhhhCCCCCccccccCCCCCCHHHHHHHHHHHhhccCCCe
Q 037346 425 YVAQSPWIQS-GKIEENILFGKEMDRERYERVLEACSLKKDLEVLPFGDQTIIGERGINLSGGQKQRIQIARPLYQDADI 503 (1156)
Q Consensus 425 ~v~Q~~~~~~-~ti~eni~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~t~v~~~g~~LSgGqkqRi~lAral~~~~~i 503 (1156)
|++|++.++. .|++||+.++.. ++ +||||||||++||||++.+|++
T Consensus 83 ~~~q~~~~~~~~tv~~~l~~~~~---------~~------------------------~LSgGe~qrv~la~al~~~p~v 129 (192)
T cd03232 83 YVEQQDVHSPNLTVREALRFSAL---------LR------------------------GLSVEQRKRLTIGVELAAKPSI 129 (192)
T ss_pred EecccCccccCCcHHHHHHHHHH---------Hh------------------------cCCHHHhHHHHHHHHHhcCCcE
Confidence 9999998776 499999986420 00 7999999999999999999999
Q ss_pred eeeeCCCCCcCHHHHHHHHHHHHh--cCCCEEEEEccCCCc-c-ccCCEEEEEeC-CeEEEcc
Q 037346 504 FLLDDPFSPVDDHTGAHLFKFCWV--SSSKTVIYATHQVEF-L-PAADLILVIKD-GKITQAG 561 (1156)
Q Consensus 504 lllDep~s~lD~~~~~~i~~~~~~--~~~~tvi~vtH~~~~-~-~~~d~i~~l~~-G~i~~~g 561 (1156)
+||||||++||+.+++.+.+.+.. .+++|+|++||+++. + ..||+|++|++ |++++.|
T Consensus 130 lllDEP~~~LD~~~~~~l~~~l~~~~~~~~tiiivtH~~~~~~~~~~d~i~~l~~~g~i~~~g 192 (192)
T cd03232 130 LFLDEPTSGLDSQAAYNIVRFLKKLADSGQAILCTIHQPSASIFEKFDRLLLLKRGGKTVYFG 192 (192)
T ss_pred EEEeCCCcCCCHHHHHHHHHHHHHHHHcCCEEEEEEcCChHHHHhhCCEEEEEcCCCeEEeCC
Confidence 999999999999999998876644 348999999999984 4 56999999999 9998765
|
PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-35 Score=285.53 Aligned_cols=176 Identities=28% Similarity=0.439 Sum_probs=156.7
Q ss_pred CCCccccceEEeeCCeEEEEEcCCCCChHHHHHHHhCCCCCCCcEEEEcCe-------------EEEEecCCcCCCccHH
Q 037346 372 PNPTLRNINLKVFHGMRVAVCGTVGSGKSSCLSCILGGVPKESGIIRLCGT-------------KAYVAQSPWIQSGKIE 438 (1156)
Q Consensus 372 ~~~~l~~i~l~i~~g~~~~ivG~~GsGKSTll~~i~g~~~~~~G~i~~~g~-------------~~~v~Q~~~~~~~ti~ 438 (1156)
+.++|+++||++.+||.++|+||||||||||++.++-+.+|++|++.+.|. ++||.|.|.+|.+||.
T Consensus 15 ~a~il~~isl~v~~Ge~iaitGPSG~GKStllk~va~Lisp~~G~l~f~Ge~vs~~~pea~Rq~VsY~~Q~paLfg~tVe 94 (223)
T COG4619 15 DAKILNNISLSVRAGEFIAITGPSGCGKSTLLKIVASLISPTSGTLLFEGEDVSTLKPEAYRQQVSYCAQTPALFGDTVE 94 (223)
T ss_pred CCeeecceeeeecCCceEEEeCCCCccHHHHHHHHHhccCCCCceEEEcCccccccChHHHHHHHHHHHcCccccccchh
Confidence 568999999999999999999999999999999999999999999999984 6899999999999999
Q ss_pred HHhhcC-----CCCCHHHHHHHHHHhCCchhhhhCCCCCccccccCCCCCCHHHHHHHHHHHhhccCCCeeeeeCCCCCc
Q 037346 439 ENILFG-----KEMDRERYERVLEACSLKKDLEVLPFGDQTIIGERGINLSGGQKQRIQIARPLYQDADIFLLDDPFSPV 513 (1156)
Q Consensus 439 eni~~~-----~~~~~~~~~~~~~~~~l~~~~~~~~~g~~t~v~~~g~~LSgGqkqRi~lAral~~~~~illlDep~s~l 513 (1156)
||+.|. +..|+......++.+++.+ +.+..+..+||||+|||++|+|-|.--|+|||||||||||
T Consensus 95 DNlifP~~~r~rr~dr~aa~~llar~~l~~----------~~L~k~it~lSGGE~QriAliR~Lq~~P~ILLLDE~TsAL 164 (223)
T COG4619 95 DNLIFPWQIRNRRPDRAAALDLLARFALPD----------SILTKNITELSGGEKQRIALIRNLQFMPKILLLDEITSAL 164 (223)
T ss_pred hccccchHHhccCCChHHHHHHHHHcCCch----------hhhcchhhhccchHHHHHHHHHHhhcCCceEEecCchhhc
Confidence 999996 3456777777777777644 3455677899999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHh---cCCCEEEEEccCCCc-cccCCEEEEEeCCeE
Q 037346 514 DDHTGAHLFKFCWV---SSSKTVIYATHQVEF-LPAADLILVIKDGKI 557 (1156)
Q Consensus 514 D~~~~~~i~~~~~~---~~~~tvi~vtH~~~~-~~~~d~i~~l~~G~i 557 (1156)
|+.+++.|-+.+.+ .++..++.|||+.+. ++.+|+++-+..|++
T Consensus 165 D~~nkr~ie~mi~~~v~~q~vAv~WiTHd~dqa~rha~k~itl~~G~~ 212 (223)
T COG4619 165 DESNKRNIEEMIHRYVREQNVAVLWITHDKDQAIRHADKVITLQPGHA 212 (223)
T ss_pred ChhhHHHHHHHHHHHhhhhceEEEEEecChHHHhhhhheEEEeccCcc
Confidence 99999988665544 467899999999987 788999999999876
|
|
| >cd03288 ABCC_SUR2 The SUR domain 2 | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.4e-35 Score=322.26 Aligned_cols=202 Identities=46% Similarity=0.747 Sum_probs=181.7
Q ss_pred EEEEEEEEEcCCCCceeeCCCCCCHHHHHHHHhhcccCCCceEEEcCeeCCCCChHHHhhcCeeeccccccccccchhcc
Q 037346 949 NIRHLQVRYAPNLPLVLRGRTGSGKSTLIQTLFRIVESTAGHILIDGKDISLIGLHDLRTRLSIIPQDPTMFEGTTRSNL 1028 (1156)
Q Consensus 949 ~~~~Vsf~Y~~~~~~vL~G~SGsGKSTL~~lL~rl~~p~~G~I~idG~di~~i~~~~LR~~i~~VpQdp~LF~gTIr~Nl 1028 (1156)
.++|++|...+++.++|.|+||||||||+++|+|+++|++|+|.+||.++.+.+...+|+.+++++|+|.+|++|+++|+
T Consensus 36 il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~i~g~~i~~~~~~~~~~~i~~v~q~~~l~~~tv~~nl 115 (257)
T cd03288 36 VLKHVKAYIKPGQKVGICGRTGSGKSSLSLAFFRMVDIFDGKIVIDGIDISKLPLHTLRSRLSIILQDPILFSGSIRFNL 115 (257)
T ss_pred ceeEEEEEEcCCCEEEEECCCCCCHHHHHHHHHcccCCCCCeEEECCEEhhhCCHHHHhhhEEEECCCCcccccHHHHhc
Confidence 45555555566666778899999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHcCCChHHHhhcCCcccc------------------ccccccCCCEEEEecCCcCCCHHHHHHH
Q 037346 1029 DPLEEHADEQIWEALDKCQLGDEVRKKKGKLDSQ------------------GRVLLKKSKVLVLDEATASVDTATDNQI 1090 (1156)
Q Consensus 1029 ~~~~~~~deei~~al~~~~l~~~i~~lp~gl~s~------------------ARALLr~~~ILiLDEaTS~LD~~te~~I 1090 (1156)
.+.....+++++++++.+++.+.+..+|.|+++. ||||+++|++|||||||++||+++.+.+
T Consensus 116 ~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~llllDEPt~gLD~~~~~~l 195 (257)
T cd03288 116 DPECKCTDDRLWEALEIAQLKNMVKSLPGGLDAVVTEGGENFSVGQRQLFCLARAFVRKSSILIMDEATASIDMATENIL 195 (257)
T ss_pred CcCCCCCHHHHHHHHHHhCcHHHHhhcccccCcEeccCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHH
Confidence 8754445677889999999999998888766642 8999999999999999999999999999
Q ss_pred HHHHHHhcCCceEEEeecCcccccccCEEEEEeCcEEeeecChhHHhcCCCChHHHHHHH
Q 037346 1091 QQTLRQHFSDCTVVTIAHRITSVLDSAMVLLLNHGLIKEYDSPTKLLENKSSSFAQLVAE 1150 (1156)
Q Consensus 1091 ~~~l~~~~~~~TvI~IaHrl~ti~~~D~I~Vl~~G~IvE~G~~~eLl~~~~g~f~~l~~~ 1150 (1156)
.+.+++..+++|+|++||+++.+..||+|++|++|+|++.|+++++.+..++.|+.++..
T Consensus 196 ~~~l~~~~~~~tiii~sh~~~~~~~~dri~~l~~G~i~~~g~~~~~~~~~~~~~~~~~~~ 255 (257)
T cd03288 196 QKVVMTAFADRTVVTIAHRVSTILDADLVLVLSRGILVECDTPENLLAQEDGVFASLVRT 255 (257)
T ss_pred HHHHHHhcCCCEEEEEecChHHHHhCCEEEEEECCEEEEeCCHHHHHhccchHHHHHHhc
Confidence 999998777899999999999999999999999999999999999998777889988764
|
The sulfonylurea receptor SUR is an ATP binding cassette (ABC) protein of the ABCC/MRP family. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity. |
| >cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.7e-35 Score=302.15 Aligned_cols=157 Identities=42% Similarity=0.632 Sum_probs=143.1
Q ss_pred EEEeeeEEEeCCCCCCCccccceEEeeCCeEEEEEcCCCCChHHHHHHHhCCCCCCCcEEEEcCe-------------EE
Q 037346 358 IEIIDGSFSWDFSSPNPTLRNINLKVFHGMRVAVCGTVGSGKSSCLSCILGGVPKESGIIRLCGT-------------KA 424 (1156)
Q Consensus 358 i~~~~~~f~~~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKSTll~~i~g~~~~~~G~i~~~g~-------------~~ 424 (1156)
++++|+++.|+.. ..++++|+||++++|++++|+||||||||||+++|+|+++|++|+|.++|. ++
T Consensus 1 l~~~~l~~~~~~~-~~~~l~~i~~~i~~G~~~~l~G~nGsGKstLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 79 (171)
T cd03228 1 IEFKNVSFSYPGR-PKPVLKDVSLTIKPGEKVAIVGPSGSGKSTLLKLLLRLYDPTSGEILIDGVDLRDLDLESLRKNIA 79 (171)
T ss_pred CEEEEEEEEcCCC-CcccccceEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCCEEEECCEEhhhcCHHHHHhhEE
Confidence 4689999999632 236999999999999999999999999999999999999999999999883 68
Q ss_pred EEecCCcCCCccHHHHhhcCCCCCHHHHHHHHHHhCCchhhhhCCCCCccccccCCCCCCHHHHHHHHHHHhhccCCCee
Q 037346 425 YVAQSPWIQSGKIEENILFGKEMDRERYERVLEACSLKKDLEVLPFGDQTIIGERGINLSGGQKQRIQIARPLYQDADIF 504 (1156)
Q Consensus 425 ~v~Q~~~~~~~ti~eni~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~t~v~~~g~~LSgGqkqRi~lAral~~~~~il 504 (1156)
|++|+|.+++.|+.||+ ||||||||++||||++.+|+++
T Consensus 80 ~~~~~~~~~~~t~~e~l-----------------------------------------LS~G~~~rl~la~al~~~p~ll 118 (171)
T cd03228 80 YVPQDPFLFSGTIRENI-----------------------------------------LSGGQRQRIAIARALLRDPPIL 118 (171)
T ss_pred EEcCCchhccchHHHHh-----------------------------------------hCHHHHHHHHHHHHHhcCCCEE
Confidence 99999999888999997 9999999999999999999999
Q ss_pred eeeCCCCCcCHHHHHHHHHHHHh-cCCCEEEEEccCCCccccCCEEEEEeCCe
Q 037346 505 LLDDPFSPVDDHTGAHLFKFCWV-SSSKTVIYATHQVEFLPAADLILVIKDGK 556 (1156)
Q Consensus 505 llDep~s~lD~~~~~~i~~~~~~-~~~~tvi~vtH~~~~~~~~d~i~~l~~G~ 556 (1156)
||||||++||+.+...+.+.+.. .+++|+|++||+++.+..||++++|++|+
T Consensus 119 llDEP~~gLD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~~d~~~~l~~g~ 171 (171)
T cd03228 119 ILDEATSALDPETEALILEALRALAKGKTVIVIAHRLSTIRDADRIIVLDDGR 171 (171)
T ss_pred EEECCCcCCCHHHHHHHHHHHHHhcCCCEEEEEecCHHHHHhCCEEEEEcCCC
Confidence 99999999999999988876644 34689999999999987799999999884
|
They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.2e-35 Score=304.94 Aligned_cols=158 Identities=35% Similarity=0.497 Sum_probs=142.9
Q ss_pred EEEeeeEEEeCCCCCCCccccceEEeeCCeEEEEEcCCCCChHHHHHHHhCCCCCCCcEEEEcC---------------e
Q 037346 358 IEIIDGSFSWDFSSPNPTLRNINLKVFHGMRVAVCGTVGSGKSSCLSCILGGVPKESGIIRLCG---------------T 422 (1156)
Q Consensus 358 i~~~~~~f~~~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKSTll~~i~g~~~~~~G~i~~~g---------------~ 422 (1156)
++++|++++|+ ++++++|+||++++||+++|+||||||||||+++|+|+++|++|+|.++| .
T Consensus 1 i~~~~l~~~~~---~~~~l~~i~~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~ 77 (178)
T cd03229 1 LELKNVSKRYG---QKTVLNDVSLNIEAGEIVALLGPSGSGKSTLLRCIAGLEEPDSGSILIDGEDLTDLEDELPPLRRR 77 (178)
T ss_pred CEEEEEEEEEC---CeEEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccchhHHHHhhc
Confidence 46899999996 35799999999999999999999999999999999999999999999877 2
Q ss_pred EEEEecCCcCCC-ccHHHHhhcCCCCCHHHHHHHHHHhCCchhhhhCCCCCccccccCCCCCCHHHHHHHHHHHhhccCC
Q 037346 423 KAYVAQSPWIQS-GKIEENILFGKEMDRERYERVLEACSLKKDLEVLPFGDQTIIGERGINLSGGQKQRIQIARPLYQDA 501 (1156)
Q Consensus 423 ~~~v~Q~~~~~~-~ti~eni~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~t~v~~~g~~LSgGqkqRi~lAral~~~~ 501 (1156)
++|++|+|.++. .|++||+.+. ||||||||++||||++++|
T Consensus 78 i~~~~q~~~~~~~~t~~~~l~~~--------------------------------------lS~G~~qr~~la~al~~~p 119 (178)
T cd03229 78 IGMVFQDFALFPHLTVLENIALG--------------------------------------LSGGQQQRVALARALAMDP 119 (178)
T ss_pred EEEEecCCccCCCCCHHHheeec--------------------------------------CCHHHHHHHHHHHHHHCCC
Confidence 689999998775 5999998764 9999999999999999999
Q ss_pred CeeeeeCCCCCcCHHHHHHHHHHHHh--cC-CCEEEEEccCCCccc-cCCEEEEEeCCe
Q 037346 502 DIFLLDDPFSPVDDHTGAHLFKFCWV--SS-SKTVIYATHQVEFLP-AADLILVIKDGK 556 (1156)
Q Consensus 502 ~illlDep~s~lD~~~~~~i~~~~~~--~~-~~tvi~vtH~~~~~~-~~d~i~~l~~G~ 556 (1156)
+++||||||++||+.++..+.+.+.. .+ ++|+|++||+++.+. .||++++|++|+
T Consensus 120 ~llilDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~g~ 178 (178)
T cd03229 120 DVLLLDEPTSALDPITRREVRALLKSLQAQLGITVVLVTHDLDEAARLADRVVVLRDGK 178 (178)
T ss_pred CEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEeCCC
Confidence 99999999999999999998876644 33 789999999999987 599999999884
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.2e-35 Score=313.69 Aligned_cols=179 Identities=28% Similarity=0.413 Sum_probs=152.0
Q ss_pred EeeeEEEeCCCCCCCccccceEEeeCCeEEEEEcCCCCChHHHHHHHhCCCCCCCcEEEEcCe-----------------
Q 037346 360 IIDGSFSWDFSSPNPTLRNINLKVFHGMRVAVCGTVGSGKSSCLSCILGGVPKESGIIRLCGT----------------- 422 (1156)
Q Consensus 360 ~~~~~f~~~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKSTll~~i~g~~~~~~G~i~~~g~----------------- 422 (1156)
++|+++.|+ ++++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.
T Consensus 1 i~~l~~~~~---~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~ 77 (206)
T TIGR03608 1 LKNISKKFG---DKIILDDLNLTIEKGKMYAIIGESGSGKSTLLNIIGLLEKFDSGQVYLNGKETPPLNSKKASKFRREK 77 (206)
T ss_pred CcceEEEEC---CEEEEeceEEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEccccchhhHHHHHHhC
Confidence 468999996 357999999999999999999999999999999999999999999998762
Q ss_pred EEEEecCCcCCC-ccHHHHhhcCCC---C----CHHHHHHHHHHhCCchhhhhCCCCCccccccCCCCCCHHHHHHHHHH
Q 037346 423 KAYVAQSPWIQS-GKIEENILFGKE---M----DRERYERVLEACSLKKDLEVLPFGDQTIIGERGINLSGGQKQRIQIA 494 (1156)
Q Consensus 423 ~~~v~Q~~~~~~-~ti~eni~~~~~---~----~~~~~~~~~~~~~l~~~~~~~~~g~~t~v~~~g~~LSgGqkqRi~lA 494 (1156)
++|++|++.++. .|++||+.++.. . ..++++++++..++.+.. +....+||||||||++||
T Consensus 78 i~~~~q~~~~~~~~t~~e~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-----------~~~~~~lS~G~~qr~~la 146 (206)
T TIGR03608 78 LGYLFQNFALIENETVEENLDLGLKYKKLSKKEKREKKKEALEKVGLNLKL-----------KQKIYELSGGEQQRVALA 146 (206)
T ss_pred eeEEecchhhccCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCchhhh-----------cCChhhCCHHHHHHHHHH
Confidence 689999998876 699999987421 1 134456677777765433 344578999999999999
Q ss_pred HhhccCCCeeeeeCCCCCcCHHHHHHHHHHHHh--cCCCEEEEEccCCCccccCCEEEEE
Q 037346 495 RPLYQDADIFLLDDPFSPVDDHTGAHLFKFCWV--SSSKTVIYATHQVEFLPAADLILVI 552 (1156)
Q Consensus 495 ral~~~~~illlDep~s~lD~~~~~~i~~~~~~--~~~~tvi~vtH~~~~~~~~d~i~~l 552 (1156)
|||+++|+++||||||++||+.+.+.+.+.+.. ..++|+|++||+++.+..||+|++|
T Consensus 147 ral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~~~~~d~i~~l 206 (206)
T TIGR03608 147 RAILKDPPLILADEPTGSLDPKNRDEVLDLLLELNDEGKTIIIVTHDPEVAKQADRVIEL 206 (206)
T ss_pred HHHHcCCCEEEEeCCcCCCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHhhcCEEEeC
Confidence 999999999999999999999999998876644 3488999999999877779999875
|
A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins. |
| >TIGR01184 ntrCD nitrate transport ATP-binding subunits C and D | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.5e-35 Score=316.35 Aligned_cols=180 Identities=28% Similarity=0.416 Sum_probs=152.4
Q ss_pred cccceEEeeCCeEEEEEcCCCCChHHHHHHHhCCCCCCCcEEEEcCe--------EEEEecCCcCCC-ccHHHHhhcCC-
Q 037346 376 LRNINLKVFHGMRVAVCGTVGSGKSSCLSCILGGVPKESGIIRLCGT--------KAYVAQSPWIQS-GKIEENILFGK- 445 (1156)
Q Consensus 376 l~~i~l~i~~g~~~~ivG~~GsGKSTll~~i~g~~~~~~G~i~~~g~--------~~~v~Q~~~~~~-~ti~eni~~~~- 445 (1156)
|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|. .+|++|++.++. .|++||+.++.
T Consensus 1 l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~v~q~~~l~~~~tv~e~l~~~~~ 80 (230)
T TIGR01184 1 LKGVNLTIQQGEFISLIGHSGCGKSTLLNLISGLAQPTSGGVILEGKQITEPGPDRMVVFQNYSLLPWLTVRENIALAVD 80 (230)
T ss_pred CCceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCChhheEEecCcccCCCCCHHHHHHHHHH
Confidence 57999999999999999999999999999999999999999999984 389999998876 59999998641
Q ss_pred ----CCCH----HHHHHHHHHhCCchhhhhCCCCCccccccCCCCCCHHHHHHHHHHHhhccCCCeeeeeCCCCCcCHHH
Q 037346 446 ----EMDR----ERYERVLEACSLKKDLEVLPFGDQTIIGERGINLSGGQKQRIQIARPLYQDADIFLLDDPFSPVDDHT 517 (1156)
Q Consensus 446 ----~~~~----~~~~~~~~~~~l~~~~~~~~~g~~t~v~~~g~~LSgGqkqRi~lAral~~~~~illlDep~s~lD~~~ 517 (1156)
..++ ++..+.++.+++.+..+ ....+||||||||++|||||+.+|+++||||||++||+.+
T Consensus 81 ~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-----------~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~gLD~~~ 149 (230)
T TIGR01184 81 RVLPDLSKSERRAIVEEHIALVGLTEAAD-----------KRPGQLSGGMKQRVAIARALSIRPKVLLLDEPFGALDALT 149 (230)
T ss_pred hcccCCCHHHHHHHHHHHHHHcCCHHHHc-----------CChhhCCHHHHHHHHHHHHHHcCCCEEEEcCCCcCCCHHH
Confidence 1222 23456677777754333 3456899999999999999999999999999999999999
Q ss_pred HHHHHHHHHh--c-CCCEEEEEccCCCccc-cCCEEEEEeCCeEEEccChHHH
Q 037346 518 GAHLFKFCWV--S-SSKTVIYATHQVEFLP-AADLILVIKDGKITQAGKYSDI 566 (1156)
Q Consensus 518 ~~~i~~~~~~--~-~~~tvi~vtH~~~~~~-~~d~i~~l~~G~i~~~g~~~~l 566 (1156)
++.+.+.+.. . .|+|+|++||+++.+. .||+|++|++|++++.|+..++
T Consensus 150 ~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~ 202 (230)
T TIGR01184 150 RGNLQEELMQIWEEHRVTVLMVTHDVDEALLLSDRVVMLTNGPAANIGQILEV 202 (230)
T ss_pred HHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEeCCcEecccCceec
Confidence 9998876643 2 4789999999999875 5999999999999988865443
|
This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase. |
| >CHL00131 ycf16 sulfate ABC transporter protein; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-34 Score=318.13 Aligned_cols=196 Identities=24% Similarity=0.282 Sum_probs=162.1
Q ss_pred cEEEeeeEEEeCCCCCCCccccceEEeeCCeEEEEEcCCCCChHHHHHHHhCC--CCCCCcEEEEcCe------------
Q 037346 357 AIEIIDGSFSWDFSSPNPTLRNINLKVFHGMRVAVCGTVGSGKSSCLSCILGG--VPKESGIIRLCGT------------ 422 (1156)
Q Consensus 357 ~i~~~~~~f~~~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKSTll~~i~g~--~~~~~G~i~~~g~------------ 422 (1156)
.++++|+++.|+ ++++|+|+||+|++||+++|+|+||||||||+++|+|+ ++|++|+|.++|.
T Consensus 7 ~l~~~~l~~~~~---~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~ 83 (252)
T CHL00131 7 ILEIKNLHASVN---ENEILKGLNLSINKGEIHAIMGPNGSGKSTLSKVIAGHPAYKILEGDILFKGESILDLEPEERAH 83 (252)
T ss_pred eEEEEeEEEEeC---CEEeeecceeEEcCCcEEEEECCCCCCHHHHHHHHcCCCcCcCCCceEEECCEEcccCChhhhhe
Confidence 599999999996 34699999999999999999999999999999999998 6899999999872
Q ss_pred --EEEEecCCcCCCc-cHHHHhhcCCC----------CC----HHHHHHHHHHhCCchhhhhCCCCCccccccCCC-CCC
Q 037346 423 --KAYVAQSPWIQSG-KIEENILFGKE----------MD----RERYERVLEACSLKKDLEVLPFGDQTIIGERGI-NLS 484 (1156)
Q Consensus 423 --~~~v~Q~~~~~~~-ti~eni~~~~~----------~~----~~~~~~~~~~~~l~~~~~~~~~g~~t~v~~~g~-~LS 484 (1156)
++|++|++.++.+ |+.+|+.++.. .+ .+++.++++.+++.+. ..+.... .||
T Consensus 84 ~~~~~~~q~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~----------~~~~~~~~~LS 153 (252)
T CHL00131 84 LGIFLAFQYPIEIPGVSNADFLRLAYNSKRKFQGLPELDPLEFLEIINEKLKLVGMDPS----------FLSRNVNEGFS 153 (252)
T ss_pred eeEEEEeccccccccccHHHHHHHhhhhhhcccccccccHHHHHHHHHHHHHHcCCchh----------hhccccccCCC
Confidence 5789999988765 89999875421 01 1233455666666421 1223333 599
Q ss_pred HHHHHHHHHHHhhccCCCeeeeeCCCCCcCHHHHHHHHHHHHh--cCCCEEEEEccCCCcccc--CCEEEEEeCCeEEEc
Q 037346 485 GGQKQRIQIARPLYQDADIFLLDDPFSPVDDHTGAHLFKFCWV--SSSKTVIYATHQVEFLPA--ADLILVIKDGKITQA 560 (1156)
Q Consensus 485 gGqkqRi~lAral~~~~~illlDep~s~lD~~~~~~i~~~~~~--~~~~tvi~vtH~~~~~~~--~d~i~~l~~G~i~~~ 560 (1156)
||||||++||||++.+|+++||||||++||+.+++.+.+.+.. .+|+|+|++||+++.+.. ||++++|++|++++.
T Consensus 154 gG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~~tH~~~~~~~~~~d~i~~l~~G~i~~~ 233 (252)
T CHL00131 154 GGEKKRNEILQMALLDSELAILDETDSGLDIDALKIIAEGINKLMTSENSIILITHYQRLLDYIKPDYVHVMQNGKIIKT 233 (252)
T ss_pred HHHHHHHHHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHhhhCCEEEEEeCCEEEEe
Confidence 9999999999999999999999999999999999998876643 358999999999998864 899999999999999
Q ss_pred cChHH
Q 037346 561 GKYSD 565 (1156)
Q Consensus 561 g~~~~ 565 (1156)
|+++.
T Consensus 234 ~~~~~ 238 (252)
T CHL00131 234 GDAEL 238 (252)
T ss_pred cChhh
Confidence 98873
|
|
| >cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos) | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.6e-35 Score=304.97 Aligned_cols=158 Identities=30% Similarity=0.483 Sum_probs=142.3
Q ss_pred cEEEeeeEEEeCCCCCCCccccceEEeeCCeEEEEEcCCCCChHHHHHHHhCCCCCCCcEEEEcC--------------e
Q 037346 357 AIEIIDGSFSWDFSSPNPTLRNINLKVFHGMRVAVCGTVGSGKSSCLSCILGGVPKESGIIRLCG--------------T 422 (1156)
Q Consensus 357 ~i~~~~~~f~~~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKSTll~~i~g~~~~~~G~i~~~g--------------~ 422 (1156)
.++++|++++| +|+|+||++++|++++|+||||||||||+++|+|+++|++|+|.++| .
T Consensus 4 ~l~~~~l~~~~-------~l~~vs~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 76 (182)
T cd03215 4 VLEVRGLSVKG-------AVRDVSFEVRAGEIVGIAGLVGNGQTELAEALFGLRPPASGEITLDGKPVTRRSPRDAIRAG 76 (182)
T ss_pred EEEEeccEEEe-------eecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCccCHHHHHhCC
Confidence 58999999987 79999999999999999999999999999999999999999999987 3
Q ss_pred EEEEecCC----cCCCccHHHHhhcCCCCCHHHHHHHHHHhCCchhhhhCCCCCccccccCCCCCCHHHHHHHHHHHhhc
Q 037346 423 KAYVAQSP----WIQSGKIEENILFGKEMDRERYERVLEACSLKKDLEVLPFGDQTIIGERGINLSGGQKQRIQIARPLY 498 (1156)
Q Consensus 423 ~~~v~Q~~----~~~~~ti~eni~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~t~v~~~g~~LSgGqkqRi~lAral~ 498 (1156)
++|++|++ ..+..|++||+.++.. ||||||||++||||++
T Consensus 77 i~~~~q~~~~~~~~~~~t~~e~l~~~~~------------------------------------LS~G~~qrl~la~al~ 120 (182)
T cd03215 77 IAYVPEDRKREGLVLDLSVAENIALSSL------------------------------------LSGGNQQKVVLARWLA 120 (182)
T ss_pred eEEecCCcccCcccCCCcHHHHHHHHhh------------------------------------cCHHHHHHHHHHHHHc
Confidence 68999985 3445799999976421 9999999999999999
Q ss_pred cCCCeeeeeCCCCCcCHHHHHHHHHHHHh--cCCCEEEEEccCCCcccc-CCEEEEEeCCeE
Q 037346 499 QDADIFLLDDPFSPVDDHTGAHLFKFCWV--SSSKTVIYATHQVEFLPA-ADLILVIKDGKI 557 (1156)
Q Consensus 499 ~~~~illlDep~s~lD~~~~~~i~~~~~~--~~~~tvi~vtH~~~~~~~-~d~i~~l~~G~i 557 (1156)
.+|+++||||||++||+.+++.+.+.+.. .+++|+|++||+++.+.. ||++++|++|++
T Consensus 121 ~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~~~~~~d~v~~l~~G~i 182 (182)
T cd03215 121 RDPRVLILDEPTRGVDVGAKAEIYRLIRELADAGKAVLLISSELDELLGLCDRILVMYEGRI 182 (182)
T ss_pred cCCCEEEECCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEecCCcC
Confidence 99999999999999999999998876643 357899999999988865 999999999974
|
The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter. |
| >PRK13543 cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-34 Score=309.13 Aligned_cols=185 Identities=23% Similarity=0.316 Sum_probs=156.2
Q ss_pred ccEEEeeeEEEeCCCCCCCccccceEEeeCCeEEEEEcCCCCChHHHHHHHhCCCCCCCcEEEEcCe----------EEE
Q 037346 356 TAIEIIDGSFSWDFSSPNPTLRNINLKVFHGMRVAVCGTVGSGKSSCLSCILGGVPKESGIIRLCGT----------KAY 425 (1156)
Q Consensus 356 ~~i~~~~~~f~~~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKSTll~~i~g~~~~~~G~i~~~g~----------~~~ 425 (1156)
..++++|++++|+ ++++++++||++++||+++|+|+||||||||+++|+|+++|++|+|.++|. ++|
T Consensus 10 ~~l~~~~l~~~~~---~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~i~~~~~~~~i~~ 86 (214)
T PRK13543 10 PLLAAHALAFSRN---EEPVFGPLDFHVDAGEALLVQGDNGAGKTTLLRVLAGLLHVESGQIQIDGKTATRGDRSRFMAY 86 (214)
T ss_pred ceEEEeeEEEecC---CceeeecceEEECCCCEEEEEcCCCCCHHHHHHHHhCCCCCCCeeEEECCEEccchhhhhceEE
Confidence 4699999999996 346999999999999999999999999999999999999999999999983 799
Q ss_pred EecCCcCCCc-cHHHHhhcCCC----CCHHHHHHHHHHhCCchhhhhCCCCCccccccCCCCCCHHHHHHHHHHHhhccC
Q 037346 426 VAQSPWIQSG-KIEENILFGKE----MDRERYERVLEACSLKKDLEVLPFGDQTIIGERGINLSGGQKQRIQIARPLYQD 500 (1156)
Q Consensus 426 v~Q~~~~~~~-ti~eni~~~~~----~~~~~~~~~~~~~~l~~~~~~~~~g~~t~v~~~g~~LSgGqkqRi~lAral~~~ 500 (1156)
++|++.++.. |++||+.++.. ..+++.++.++..++.+.. .....+||||||||++||||++.+
T Consensus 87 ~~q~~~~~~~~t~~e~l~~~~~~~~~~~~~~~~~~l~~~~l~~~~-----------~~~~~~LS~G~~qrv~laral~~~ 155 (214)
T PRK13543 87 LGHLPGLKADLSTLENLHFLCGLHGRRAKQMPGSALAIVGLAGYE-----------DTLVRQLSAGQKKRLALARLWLSP 155 (214)
T ss_pred eecCcccccCCcHHHHHHHHHHhcCCcHHHHHHHHHHHcCChhhc-----------cCChhhCCHHHHHHHHHHHHHhcC
Confidence 9999988765 99999976422 1233445566666654322 344578999999999999999999
Q ss_pred CCeeeeeCCCCCcCHHHHHHHHHHHHh--cCCCEEEEEccCCCccc-cCCEEEEEeC
Q 037346 501 ADIFLLDDPFSPVDDHTGAHLFKFCWV--SSSKTVIYATHQVEFLP-AADLILVIKD 554 (1156)
Q Consensus 501 ~~illlDep~s~lD~~~~~~i~~~~~~--~~~~tvi~vtH~~~~~~-~~d~i~~l~~ 554 (1156)
|+++||||||++||+..++.+.+.+.. .+++|+|++||+++.+. .||++++++.
T Consensus 156 p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~~~i~~l~~ 212 (214)
T PRK13543 156 APLWLLDEPYANLDLEGITLVNRMISAHLRGGGAALVTTHGAYAAPPVRTRMLTLEA 212 (214)
T ss_pred CCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecChhhhhhhcceEEEEee
Confidence 999999999999999999988776533 45789999999999986 5999999863
|
|
| >cd03220 ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-34 Score=313.61 Aligned_cols=190 Identities=24% Similarity=0.306 Sum_probs=154.7
Q ss_pred EEEeeeEEEeCCCCCCCccccceEEeeCCeEEEEEcCCCCChHHHHHHHhCCCCCCCcEEEEcCeEEEEec-CCcC-CCc
Q 037346 358 IEIIDGSFSWDFSSPNPTLRNINLKVFHGMRVAVCGTVGSGKSSCLSCILGGVPKESGIIRLCGTKAYVAQ-SPWI-QSG 435 (1156)
Q Consensus 358 i~~~~~~f~~~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKSTll~~i~g~~~~~~G~i~~~g~~~~v~Q-~~~~-~~~ 435 (1156)
+.++|++..|+ ++++|+|+||+|++|++++|+||||||||||+++|+|+++|++|+|.++|+..+..+ .+.+ ++.
T Consensus 23 l~~~~~~~~~~---~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~~ 99 (224)
T cd03220 23 LGILGRKGEVG---EFWALKDVSFEVPRGERIGLIGRNGAGKSTLLRLLAGIYPPDSGTVTVRGRVSSLLGLGGGFNPEL 99 (224)
T ss_pred hhhhhhhhhcC---CeEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEchhhcccccCCCCC
Confidence 56778888885 457999999999999999999999999999999999999999999999997655433 2333 356
Q ss_pred cHHHHhhcCCC---CCH----HHHHHHHHHhCCchhhhhCCCCCccccccCCCCCCHHHHHHHHHHHhhccCCCeeeeeC
Q 037346 436 KIEENILFGKE---MDR----ERYERVLEACSLKKDLEVLPFGDQTIIGERGINLSGGQKQRIQIARPLYQDADIFLLDD 508 (1156)
Q Consensus 436 ti~eni~~~~~---~~~----~~~~~~~~~~~l~~~~~~~~~g~~t~v~~~g~~LSgGqkqRi~lAral~~~~~illlDe 508 (1156)
|++||+.++.. .+. ++..++++..++.+.+ .....+||||||||++||||++++|+++||||
T Consensus 100 tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-----------~~~~~~LSgG~~qrv~laral~~~p~llllDE 168 (224)
T cd03220 100 TGRENIYLNGRLLGLSRKEIDEKIDEIIEFSELGDFI-----------DLPVKTYSSGMKARLAFAIATALEPDILLIDE 168 (224)
T ss_pred cHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhh-----------hCChhhCCHHHHHHHHHHHHHhcCCCEEEEeC
Confidence 99999986532 121 2344455555554333 23446899999999999999999999999999
Q ss_pred CCCCcCHHHHHHHHHHHHh--cCCCEEEEEccCCCccc-cCCEEEEEeCCeEEEcc
Q 037346 509 PFSPVDDHTGAHLFKFCWV--SSSKTVIYATHQVEFLP-AADLILVIKDGKITQAG 561 (1156)
Q Consensus 509 p~s~lD~~~~~~i~~~~~~--~~~~tvi~vtH~~~~~~-~~d~i~~l~~G~i~~~g 561 (1156)
||++||+.+++.+.+.+.. .+++|+|++||+++.+. .||++++|++|++++.|
T Consensus 169 P~~gLD~~~~~~~~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~g 224 (224)
T cd03220 169 VLAVGDAAFQEKCQRRLRELLKQGKTVILVSHDPSSIKRLCDRALVLEKGKIRFDG 224 (224)
T ss_pred CcccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEecC
Confidence 9999999999988876643 35789999999999876 59999999999998765
|
Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenzae) and a cytoplasmic membrane protein MPA2. |
| >cd03231 ABC_CcmA_heme_exporter CcmA, the ATP-binding component of the bacterial CcmAB transporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.5e-34 Score=304.56 Aligned_cols=181 Identities=25% Similarity=0.318 Sum_probs=155.5
Q ss_pred EEEeeeEEEeCCCCCCCccccceEEeeCCeEEEEEcCCCCChHHHHHHHhCCCCCCCcEEEEcC------------eEEE
Q 037346 358 IEIIDGSFSWDFSSPNPTLRNINLKVFHGMRVAVCGTVGSGKSSCLSCILGGVPKESGIIRLCG------------TKAY 425 (1156)
Q Consensus 358 i~~~~~~f~~~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKSTll~~i~g~~~~~~G~i~~~g------------~~~~ 425 (1156)
++++|+++.|+ ++++|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.++| .++|
T Consensus 1 l~i~~l~~~~~---~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~i~~ 77 (201)
T cd03231 1 LEADELTCERD---GRALFSGLSFTLAAGEALQVTGPNGSGKTTLLRILAGLSPPLAGRVLLNGGPLDFQRDSIARGLLY 77 (201)
T ss_pred CEEEEEEEEeC---CceeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEecccccHHhhhheEE
Confidence 46899999996 35799999999999999999999999999999999999999999999987 3689
Q ss_pred EecCCcCC-CccHHHHhhcCCC-CCHHHHHHHHHHhCCchhhhhCCCCCccccccCCCCCCHHHHHHHHHHHhhccCCCe
Q 037346 426 VAQSPWIQ-SGKIEENILFGKE-MDRERYERVLEACSLKKDLEVLPFGDQTIIGERGINLSGGQKQRIQIARPLYQDADI 503 (1156)
Q Consensus 426 v~Q~~~~~-~~ti~eni~~~~~-~~~~~~~~~~~~~~l~~~~~~~~~g~~t~v~~~g~~LSgGqkqRi~lAral~~~~~i 503 (1156)
++|++.++ ..|++||+.+... .++++.+++++..++.+... ....+||||||||++||||++.+|++
T Consensus 78 ~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~l~~~~l~~~~~-----------~~~~~LS~G~~qrl~laral~~~p~l 146 (201)
T cd03231 78 LGHAPGIKTTLSVLENLRFWHADHSDEQVEEALARVGLNGFED-----------RPVAQLSAGQQRRVALARLLLSGRPL 146 (201)
T ss_pred eccccccCCCcCHHHHHHhhcccccHHHHHHHHHHcCChhhhc-----------CchhhCCHHHHHHHHHHHHHhcCCCE
Confidence 99998775 5799999987643 34567788888888864332 33568999999999999999999999
Q ss_pred eeeeCCCCCcCHHHHHHHHHHHHh--cCCCEEEEEccCCCccc-cCCEEEEE
Q 037346 504 FLLDDPFSPVDDHTGAHLFKFCWV--SSSKTVIYATHQVEFLP-AADLILVI 552 (1156)
Q Consensus 504 lllDep~s~lD~~~~~~i~~~~~~--~~~~tvi~vtH~~~~~~-~~d~i~~l 552 (1156)
+||||||++||+.+++++.+.+.. .+|+|+|++||+...+. .+++++++
T Consensus 147 lllDEPt~~LD~~~~~~l~~~l~~~~~~g~tiii~sH~~~~~~~~~~~~~~~ 198 (201)
T cd03231 147 WILDEPTTALDKAGVARFAEAMAGHCARGGMVVLTTHQDLGLSEAGARELDL 198 (201)
T ss_pred EEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCchhhhhccceeEec
Confidence 999999999999999998876643 35889999999987654 68998876
|
The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperone that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE. |
| >cd03267 ABC_NatA_like Similar in sequence to NatA, this is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-34 Score=315.22 Aligned_cols=179 Identities=24% Similarity=0.342 Sum_probs=148.2
Q ss_pred CCCccccceEEeeCCeEEEEEcCCCCChHHHHHHHhCCCCCCCcEEEEcCe------------EEEEe-cCCcCC-CccH
Q 037346 372 PNPTLRNINLKVFHGMRVAVCGTVGSGKSSCLSCILGGVPKESGIIRLCGT------------KAYVA-QSPWIQ-SGKI 437 (1156)
Q Consensus 372 ~~~~l~~i~l~i~~g~~~~ivG~~GsGKSTll~~i~g~~~~~~G~i~~~g~------------~~~v~-Q~~~~~-~~ti 437 (1156)
++++|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.++|. ++|++ |++.++ ..|+
T Consensus 33 ~~~il~~vs~~i~~Ge~~~i~G~NGsGKSTLl~~i~Gl~~p~~G~i~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~tv 112 (236)
T cd03267 33 EVEALKGISFTIEKGEIVGFIGPNGAGKTTTLKILSGLLQPTSGEVRVAGLVPWKRRKKFLRRIGVVFGQKTQLWWDLPV 112 (236)
T ss_pred CeeeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCEEccccchhhcccEEEEcCCccccCCCCcH
Confidence 357999999999999999999999999999999999999999999999873 68997 556665 5699
Q ss_pred HHHhhcCCC---CCH----HHHHHHHHHhCCchhhhhCCCCCccccccCCCCCCHHHHHHHHHHHhhccCCCeeeeeCCC
Q 037346 438 EENILFGKE---MDR----ERYERVLEACSLKKDLEVLPFGDQTIIGERGINLSGGQKQRIQIARPLYQDADIFLLDDPF 510 (1156)
Q Consensus 438 ~eni~~~~~---~~~----~~~~~~~~~~~l~~~~~~~~~g~~t~v~~~g~~LSgGqkqRi~lAral~~~~~illlDep~ 510 (1156)
+||+.+... .+. ++..++++.+++.+.. .....+||||||||++||||++.+|+++||||||
T Consensus 113 ~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~-----------~~~~~~LS~G~~qrl~la~al~~~p~llllDEPt 181 (236)
T cd03267 113 IDSFYLLAAIYDLPPARFKKRLDELSELLDLEELL-----------DTPVRQLSLGQRMRAEIAAALLHEPEILFLDEPT 181 (236)
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhHh-----------cCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCC
Confidence 999976421 222 2334456666664333 2344689999999999999999999999999999
Q ss_pred CCcCHHHHHHHHHHHHh---cCCCEEEEEccCCCccc-cCCEEEEEeCCeEEEcc
Q 037346 511 SPVDDHTGAHLFKFCWV---SSSKTVIYATHQVEFLP-AADLILVIKDGKITQAG 561 (1156)
Q Consensus 511 s~lD~~~~~~i~~~~~~---~~~~tvi~vtH~~~~~~-~~d~i~~l~~G~i~~~g 561 (1156)
++||+.+.+++.+.+.. ..++|+|++||+++.+. .||++++|++|++++.|
T Consensus 182 ~~LD~~~~~~l~~~l~~~~~~~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~g 236 (236)
T cd03267 182 IGLDVVAQENIRNFLKEYNRERGTTVLLTSHYMKDIEALARRVLVIDKGRLLYDG 236 (236)
T ss_pred CCCCHHHHHHHHHHHHHHHhcCCCEEEEEecCHHHHHHhCCEEEEEeCCEEEecC
Confidence 99999999999886644 23789999999999876 49999999999998754
|
NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single intergral membrane protein. |
| >PRK10261 glutathione transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-34 Score=355.52 Aligned_cols=203 Identities=19% Similarity=0.334 Sum_probs=171.1
Q ss_pred ccEEEeeeEEEeCCCC--------CCCccccceEEeeCCeEEEEEcCCCCChHHHHHHHhCCCCCCCcEEEEcCe-----
Q 037346 356 TAIEIIDGSFSWDFSS--------PNPTLRNINLKVFHGMRVAVCGTVGSGKSSCLSCILGGVPKESGIIRLCGT----- 422 (1156)
Q Consensus 356 ~~i~~~~~~f~~~~~~--------~~~~l~~i~l~i~~g~~~~ivG~~GsGKSTll~~i~g~~~~~~G~i~~~g~----- 422 (1156)
..++++|+++.|+... ...+|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.++|.
T Consensus 312 ~~L~~~~l~~~y~~~~~~~~~~~~~~~~l~~vs~~i~~Ge~~~lvG~nGsGKSTLlk~i~Gl~~p~~G~I~~~g~~i~~~ 391 (623)
T PRK10261 312 PILQVRNLVTRFPLRSGLLNRVTREVHAVEKVSFDLWPGETLSLVGESGSGKSTTGRALLRLVESQGGEIIFNGQRIDTL 391 (623)
T ss_pred ceEEEeeeEEEEcCCCccccccCCceEEEeeeEeEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCcEEEECCEECCcC
Confidence 4699999999996311 246899999999999999999999999999999999999999999999872
Q ss_pred -----------EEEEecCCc--CC-CccHHHHhhcCC---CC-C----HHHHHHHHHHhCCch-hhhhCCCCCccccccC
Q 037346 423 -----------KAYVAQSPW--IQ-SGKIEENILFGK---EM-D----RERYERVLEACSLKK-DLEVLPFGDQTIIGER 479 (1156)
Q Consensus 423 -----------~~~v~Q~~~--~~-~~ti~eni~~~~---~~-~----~~~~~~~~~~~~l~~-~~~~~~~g~~t~v~~~ 479 (1156)
++|++|+|. ++ ..||.||+.++. .. . .++..++++.++|.. ..+ ..
T Consensus 392 ~~~~~~~~~~~i~~v~Q~~~~~l~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~L~~~gL~~~~~~-----------~~ 460 (623)
T PRK10261 392 SPGKLQALRRDIQFIFQDPYASLDPRQTVGDSIMEPLRVHGLLPGKAAAARVAWLLERVGLLPEHAW-----------RY 460 (623)
T ss_pred CHHHHHHhcCCeEEEecCchhhcCCCCCHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCCHHHhh-----------CC
Confidence 799999983 44 469999997632 11 1 235566778888753 333 34
Q ss_pred CCCCCHHHHHHHHHHHhhccCCCeeeeeCCCCCcCHHHHHHHHHHHHh---cCCCEEEEEccCCCccc-cCCEEEEEeCC
Q 037346 480 GINLSGGQKQRIQIARPLYQDADIFLLDDPFSPVDDHTGAHLFKFCWV---SSSKTVIYATHQVEFLP-AADLILVIKDG 555 (1156)
Q Consensus 480 g~~LSgGqkqRi~lAral~~~~~illlDep~s~lD~~~~~~i~~~~~~---~~~~tvi~vtH~~~~~~-~~d~i~~l~~G 555 (1156)
..+|||||||||+|||||+.+|++|||||||++||+.++..+++.+.. ..|.|+|+|||+++.+. .||+|++|++|
T Consensus 461 ~~~LSgGqrQRv~iAraL~~~p~llllDEPts~LD~~~~~~i~~ll~~l~~~~g~tvi~isHdl~~v~~~~dri~vl~~G 540 (623)
T PRK10261 461 PHEFSGGQRQRICIARALALNPKVIIADEAVSALDVSIRGQIINLLLDLQRDFGIAYLFISHDMAVVERISHRVAVMYLG 540 (623)
T ss_pred cccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECC
Confidence 468999999999999999999999999999999999999999886643 24789999999999986 59999999999
Q ss_pred eEEEccChHHHHhc
Q 037346 556 KITQAGKYSDILNS 569 (1156)
Q Consensus 556 ~i~~~g~~~~l~~~ 569 (1156)
++++.|+.+++...
T Consensus 541 ~iv~~g~~~~i~~~ 554 (623)
T PRK10261 541 QIVEIGPRRAVFEN 554 (623)
T ss_pred EEEEecCHHHHhcC
Confidence 99999999998754
|
|
| >COG4604 CeuD ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-35 Score=290.50 Aligned_cols=198 Identities=29% Similarity=0.414 Sum_probs=171.8
Q ss_pred EEEeeeEEEeCCCCCCCccccceEEeeCCeEEEEEcCCCCChHHHHHHHhCCCCCCCcEEEEcCe-------------EE
Q 037346 358 IEIIDGSFSWDFSSPNPTLRNINLKVFHGMRVAVCGTVGSGKSSCLSCILGGVPKESGIIRLCGT-------------KA 424 (1156)
Q Consensus 358 i~~~~~~f~~~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKSTll~~i~g~~~~~~G~i~~~g~-------------~~ 424 (1156)
|+++|++++|. ++.+++|+|++|++|.+++++||||+||||||..+.+++++++|+|.++|. ++
T Consensus 2 I~i~nv~K~y~---~~~vl~~isl~i~~g~iTs~IGPNGAGKSTLLS~~sRL~~~d~G~i~i~g~~~~~~~s~~LAk~lS 78 (252)
T COG4604 2 ITIENVSKSYG---TKVVLDDVSLDIPKGGITSIIGPNGAGKSTLLSMMSRLLKKDSGEITIDGLELTSTPSKELAKKLS 78 (252)
T ss_pred eeehhhhHhhC---CEEeeccceeeecCCceeEEECCCCccHHHHHHHHHHhccccCceEEEeeeecccCChHHHHHHHH
Confidence 78899999996 568999999999999999999999999999999999999999999999995 35
Q ss_pred EEecCCcCC-CccHHHHhhcCC-CC--------CHHHHHHHHHHhCCchhhhhCCCCCccccccCCCCCCHHHHHHHHHH
Q 037346 425 YVAQSPWIQ-SGKIEENILFGK-EM--------DRERYERVLEACSLKKDLEVLPFGDQTIIGERGINLSGGQKQRIQIA 494 (1156)
Q Consensus 425 ~v~Q~~~~~-~~ti~eni~~~~-~~--------~~~~~~~~~~~~~l~~~~~~~~~g~~t~v~~~g~~LSgGqkqRi~lA 494 (1156)
..-|+..+. .-||+|-+.||+ |+ |+..++++++...|.+.-+ +.-.+||||||||.-+|
T Consensus 79 ILkQ~N~i~~rlTV~dLv~FGRfPYSqGRlt~eD~~~I~~aieyl~L~~l~d-----------ryLd~LSGGQrQRAfIA 147 (252)
T COG4604 79 ILKQENHINSRLTVRDLVGFGRFPYSQGRLTKEDRRIINEAIEYLHLEDLSD-----------RYLDELSGGQRQRAFIA 147 (252)
T ss_pred HHHhhchhhheeEHHHHhhcCCCcccCCCCchHHHHHHHHHHHHhcccchHH-----------HhHHhcccchhhhhhhh
Confidence 677777654 459999999996 33 4556778888877765332 22357999999999999
Q ss_pred HhhccCCCeeeeeCCCCCcCHHHHHHHHHHHHh---cCCCEEEEEccCCCccc-cCCEEEEEeCCeEEEccChHHHHhc
Q 037346 495 RPLYQDADIFLLDDPFSPVDDHTGAHLFKFCWV---SSSKTVIYATHQVEFLP-AADLILVIKDGKITQAGKYSDILNS 569 (1156)
Q Consensus 495 ral~~~~~illlDep~s~lD~~~~~~i~~~~~~---~~~~tvi~vtH~~~~~~-~~d~i~~l~~G~i~~~g~~~~l~~~ 569 (1156)
..++++.|.++||||+++||......+++.+.+ .-|||+|+|-||..+.. ++|+|+.|++|+++.+|+++++++.
T Consensus 148 MVlaQdTdyvlLDEPLNNLDmkHsv~iMk~Lrrla~el~KtiviVlHDINfAS~YsD~IVAlK~G~vv~~G~~~eii~~ 226 (252)
T COG4604 148 MVLAQDTDYVLLDEPLNNLDMKHSVQIMKILRRLADELGKTIVVVLHDINFASCYSDHIVALKNGKVVKQGSPDEIIQP 226 (252)
T ss_pred eeeeccCcEEEecCcccccchHHHHHHHHHHHHHHHHhCCeEEEEEecccHHHhhhhheeeecCCEEEecCCHHHhcCH
Confidence 999999999999999999999988888776543 45899999999999987 5999999999999999999999864
|
|
| >TIGR02770 nickel_nikD nickel import ATP-binding protein NikD | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-34 Score=313.17 Aligned_cols=187 Identities=27% Similarity=0.381 Sum_probs=155.8
Q ss_pred ccccceEEeeCCeEEEEEcCCCCChHHHHHHHhCCCCC----CCcEEEEcC-----------eEEEEecCCc-CC-C-cc
Q 037346 375 TLRNINLKVFHGMRVAVCGTVGSGKSSCLSCILGGVPK----ESGIIRLCG-----------TKAYVAQSPW-IQ-S-GK 436 (1156)
Q Consensus 375 ~l~~i~l~i~~g~~~~ivG~~GsGKSTll~~i~g~~~~----~~G~i~~~g-----------~~~~v~Q~~~-~~-~-~t 436 (1156)
+++|+||+|++|++++|+||||||||||+++|+|+++| ++|+|.++| .++|++|+|. .+ . .|
T Consensus 1 ~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~~~~~G~i~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~~~t 80 (230)
T TIGR02770 1 LVQDLNLSLKRGEVLALVGESGSGKSLTCLAILGLLPPGLTQTSGEILLDGRPLLPLSIRGRHIATIMQNPRTAFNPLFT 80 (230)
T ss_pred CccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCccCccccEEEECCEechhhhhhhheeEEEecCchhhcCcccC
Confidence 57899999999999999999999999999999999999 899999987 3799999995 33 3 59
Q ss_pred HHHHhhcCC-----CC--CHHHHHHHHHHhCCchhhhhCCCCCccccccCCCCCCHHHHHHHHHHHhhccCCCeeeeeCC
Q 037346 437 IEENILFGK-----EM--DRERYERVLEACSLKKDLEVLPFGDQTIIGERGINLSGGQKQRIQIARPLYQDADIFLLDDP 509 (1156)
Q Consensus 437 i~eni~~~~-----~~--~~~~~~~~~~~~~l~~~~~~~~~g~~t~v~~~g~~LSgGqkqRi~lAral~~~~~illlDep 509 (1156)
+.+|+.+.. .. ..+++.++++.+++.+. .+.....+.+||||||||++||||++++|+++|||||
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~--------~~~~~~~~~~LS~G~~qrv~laral~~~p~vllLDEP 152 (230)
T TIGR02770 81 MGNHAIETLRSLGKLSKQARALILEALEAVGLPDP--------EEVLKKYPFQLSGGMLQRVMIALALLLEPPFLIADEP 152 (230)
T ss_pred HHHHHHHHHHHcCccHHHHHHHHHHHHHHcCCCch--------HHHHhCChhhcCHHHHHHHHHHHHHhcCCCEEEEcCC
Confidence 999986532 11 12345667777777521 1223456678999999999999999999999999999
Q ss_pred CCCcCHHHHHHHHHHHHh--c-CCCEEEEEccCCCccc-cCCEEEEEeCCeEEEccChHHHHhc
Q 037346 510 FSPVDDHTGAHLFKFCWV--S-SSKTVIYATHQVEFLP-AADLILVIKDGKITQAGKYSDILNS 569 (1156)
Q Consensus 510 ~s~lD~~~~~~i~~~~~~--~-~~~tvi~vtH~~~~~~-~~d~i~~l~~G~i~~~g~~~~l~~~ 569 (1156)
|++||+.+.+.+.+.+.. . .++|+|++||+++.+. .||++++|++|++++.|+++++...
T Consensus 153 t~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~ 216 (230)
T TIGR02770 153 TTDLDVVNQARVLKLLRELRQLFGTGILLITHDLGVVARIADEVAVMDDGRIVERGTVKEIFYN 216 (230)
T ss_pred ccccCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHHhC
Confidence 999999999988876643 2 3789999999999886 5999999999999999999888643
|
This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous. |
| >PRK03695 vitamin B12-transporter ATPase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.1e-34 Score=314.89 Aligned_cols=191 Identities=26% Similarity=0.404 Sum_probs=159.7
Q ss_pred EEeeeEEEeCCCCCCCccccceEEeeCCeEEEEEcCCCCChHHHHHHHhCCCCCCCcEEEEcCe-------------EEE
Q 037346 359 EIIDGSFSWDFSSPNPTLRNINLKVFHGMRVAVCGTVGSGKSSCLSCILGGVPKESGIIRLCGT-------------KAY 425 (1156)
Q Consensus 359 ~~~~~~f~~~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKSTll~~i~g~~~~~~G~i~~~g~-------------~~~ 425 (1156)
+++|+++. .+|+|+||++++|++++|+||||||||||+++|+|.+++ +|+|.++|. ++|
T Consensus 2 ~~~~l~~~-------~~l~~vsl~i~~Gei~~l~G~nGsGKSTLl~~l~Gl~~~-~G~i~~~g~~i~~~~~~~~~~~i~~ 73 (248)
T PRK03695 2 QLNDVAVS-------TRLGPLSAEVRAGEILHLVGPNGAGKSTLLARMAGLLPG-SGSIQFAGQPLEAWSAAELARHRAY 73 (248)
T ss_pred cccccchh-------ceecceEEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCC-CeEEEECCEecCcCCHHHHhhheEE
Confidence 46677764 279999999999999999999999999999999999865 999999883 689
Q ss_pred EecCCc-CCCccHHHHhhcCCCC--C----HHHHHHHHHHhCCchhhhhCCCCCccccccCCCCCCHHHHHHHHHHHhhc
Q 037346 426 VAQSPW-IQSGKIEENILFGKEM--D----RERYERVLEACSLKKDLEVLPFGDQTIIGERGINLSGGQKQRIQIARPLY 498 (1156)
Q Consensus 426 v~Q~~~-~~~~ti~eni~~~~~~--~----~~~~~~~~~~~~l~~~~~~~~~g~~t~v~~~g~~LSgGqkqRi~lAral~ 498 (1156)
++|++. .+..|+++|+.++... + .++.+++++.+++.+.. ...+..||||||||++||||++
T Consensus 74 v~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-----------~~~~~~LS~G~~qrv~la~al~ 142 (248)
T PRK03695 74 LSQQQTPPFAMPVFQYLTLHQPDKTRTEAVASALNEVAEALGLDDKL-----------GRSVNQLSGGEWQRVRLAAVVL 142 (248)
T ss_pred ecccCccCCCccHHHHHHhcCccCCCcHHHHHHHHHHHHHcCCHhHh-----------cCCcccCCHHHHHHHHHHHHHh
Confidence 999985 4567999999986321 1 23456677777775433 2445789999999999999999
Q ss_pred c-------CCCeeeeeCCCCCcCHHHHHHHHHHHHh--cCCCEEEEEccCCCccc-cCCEEEEEeCCeEEEccChHHHHh
Q 037346 499 Q-------DADIFLLDDPFSPVDDHTGAHLFKFCWV--SSSKTVIYATHQVEFLP-AADLILVIKDGKITQAGKYSDILN 568 (1156)
Q Consensus 499 ~-------~~~illlDep~s~lD~~~~~~i~~~~~~--~~~~tvi~vtH~~~~~~-~~d~i~~l~~G~i~~~g~~~~l~~ 568 (1156)
. +|+++||||||++||+.+++.+.+.+.. .+++|+|++||+++.+. .||++++|++|++++.|+++++..
T Consensus 143 ~~~~~~~p~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~~~tvi~~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 222 (248)
T PRK03695 143 QVWPDINPAGQLLLLDEPMNSLDVAQQAALDRLLSELCQQGIAVVMSSHDLNHTLRHADRVWLLKQGKLLASGRRDEVLT 222 (248)
T ss_pred ccccccCCCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEECCHHHHhC
Confidence 8 6799999999999999999988876643 35789999999999775 699999999999999999888754
|
|
| >cd03217 ABC_FeS_Assembly ABC-type transport system involved in Fe-S cluster assembly, ATPase component | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-34 Score=305.01 Aligned_cols=168 Identities=29% Similarity=0.343 Sum_probs=146.8
Q ss_pred EEEeeeEEEeCCCCCCCccccceEEeeCCeEEEEEcCCCCChHHHHHHHhCC--CCCCCcEEEEcCe-------------
Q 037346 358 IEIIDGSFSWDFSSPNPTLRNINLKVFHGMRVAVCGTVGSGKSSCLSCILGG--VPKESGIIRLCGT------------- 422 (1156)
Q Consensus 358 i~~~~~~f~~~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKSTll~~i~g~--~~~~~G~i~~~g~------------- 422 (1156)
++++|++++|+ ++++++|+||++++||+++|+|+||||||||+++|+|+ ++|++|+|.++|.
T Consensus 1 l~~~~l~~~~~---~~~~l~~is~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~p~~G~i~~~g~~~~~~~~~~~~~~ 77 (200)
T cd03217 1 LEIKDLHVSVG---GKEILKGVNLTIKKGEVHALMGPNGSGKSTLAKTIMGHPKYEVTEGEILFKGEDITDLPPEERARL 77 (200)
T ss_pred CeEEEEEEEeC---CEEeeeccceEECCCcEEEEECCCCCCHHHHHHHHhCCCcCCCCccEEEECCEECCcCCHHHHhhC
Confidence 46899999996 34799999999999999999999999999999999999 5899999999872
Q ss_pred -EEEEecCCcCCCc-cHHHHhhcCCCCCHHHHHHHHHHhCCchhhhhCCCCCccccccCCCCCCHHHHHHHHHHHhhccC
Q 037346 423 -KAYVAQSPWIQSG-KIEENILFGKEMDRERYERVLEACSLKKDLEVLPFGDQTIIGERGINLSGGQKQRIQIARPLYQD 500 (1156)
Q Consensus 423 -~~~v~Q~~~~~~~-ti~eni~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~t~v~~~g~~LSgGqkqRi~lAral~~~ 500 (1156)
++|++|+|.++++ ++++|+ . ....+||||||||++||||++.+
T Consensus 78 ~i~~v~q~~~~~~~~~~~~~l------------------------~-----------~~~~~LS~G~~qrv~laral~~~ 122 (200)
T cd03217 78 GIFLAFQYPPEIPGVKNADFL------------------------R-----------YVNEGFSGGEKKRNEILQLLLLE 122 (200)
T ss_pred cEEEeecChhhccCccHHHHH------------------------h-----------hccccCCHHHHHHHHHHHHHhcC
Confidence 7899999988765 565554 0 01147999999999999999999
Q ss_pred CCeeeeeCCCCCcCHHHHHHHHHHHHh--cCCCEEEEEccCCCccc--cCCEEEEEeCCeEEEccCh
Q 037346 501 ADIFLLDDPFSPVDDHTGAHLFKFCWV--SSSKTVIYATHQVEFLP--AADLILVIKDGKITQAGKY 563 (1156)
Q Consensus 501 ~~illlDep~s~lD~~~~~~i~~~~~~--~~~~tvi~vtH~~~~~~--~~d~i~~l~~G~i~~~g~~ 563 (1156)
|+++||||||++||+.+.+.+.+.+.. .+++|+|++||+++.+. .||++++|++|++.+.|+.
T Consensus 123 p~illlDEPt~~LD~~~~~~l~~~L~~~~~~~~tiii~sh~~~~~~~~~~d~i~~l~~G~i~~~~~~ 189 (200)
T cd03217 123 PDLAILDEPDSGLDIDALRLVAEVINKLREEGKSVLIITHYQRLLDYIKPDRVHVLYDGRIVKSGDK 189 (200)
T ss_pred CCEEEEeCCCccCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhhCCEEEEEECCEEEEEccH
Confidence 999999999999999999988876644 34789999999999887 6999999999999999843
|
Biosynthesis of iron-sulfur clusters (Fe-S) depends on multiprotein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet. |
| >PRK13538 cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.2e-34 Score=305.65 Aligned_cols=181 Identities=24% Similarity=0.289 Sum_probs=155.2
Q ss_pred EEEeeeEEEeCCCCCCCccccceEEeeCCeEEEEEcCCCCChHHHHHHHhCCCCCCCcEEEEcCe------------EEE
Q 037346 358 IEIIDGSFSWDFSSPNPTLRNINLKVFHGMRVAVCGTVGSGKSSCLSCILGGVPKESGIIRLCGT------------KAY 425 (1156)
Q Consensus 358 i~~~~~~f~~~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKSTll~~i~g~~~~~~G~i~~~g~------------~~~ 425 (1156)
++++|+++.|+ ++++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|. ++|
T Consensus 2 l~~~~l~~~~~---~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~v~~~g~~~~~~~~~~~~~~~~ 78 (204)
T PRK13538 2 LEARNLACERD---ERILFSGLSFTLNAGELVQIEGPNGAGKTSLLRILAGLARPDAGEVLWQGEPIRRQRDEYHQDLLY 78 (204)
T ss_pred eEEEEEEEEEC---CEEEEecceEEECCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEcccchHHhhhheEE
Confidence 68999999996 346999999999999999999999999999999999999999999999873 689
Q ss_pred EecCCcCCC-ccHHHHhhcCCC----CCHHHHHHHHHHhCCchhhhhCCCCCccccccCCCCCCHHHHHHHHHHHhhccC
Q 037346 426 VAQSPWIQS-GKIEENILFGKE----MDRERYERVLEACSLKKDLEVLPFGDQTIIGERGINLSGGQKQRIQIARPLYQD 500 (1156)
Q Consensus 426 v~Q~~~~~~-~ti~eni~~~~~----~~~~~~~~~~~~~~l~~~~~~~~~g~~t~v~~~g~~LSgGqkqRi~lAral~~~ 500 (1156)
++|++.++. .|++||+.++.. .++++++++++.+++.+..+ ....+||||||||++||||++++
T Consensus 79 ~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~l~~~gl~~~~~-----------~~~~~LS~G~~qrl~la~al~~~ 147 (204)
T PRK13538 79 LGHQPGIKTELTALENLRFYQRLHGPGDDEALWEALAQVGLAGFED-----------VPVRQLSAGQQRRVALARLWLTR 147 (204)
T ss_pred eCCccccCcCCcHHHHHHHHHHhcCccHHHHHHHHHHHcCCHHHhh-----------CChhhcCHHHHHHHHHHHHHhcC
Confidence 999987765 599999987532 23456777888888865432 34568999999999999999999
Q ss_pred CCeeeeeCCCCCcCHHHHHHHHHHHHh--cCCCEEEEEccCCCcccc-CCEEEEE
Q 037346 501 ADIFLLDDPFSPVDDHTGAHLFKFCWV--SSSKTVIYATHQVEFLPA-ADLILVI 552 (1156)
Q Consensus 501 ~~illlDep~s~lD~~~~~~i~~~~~~--~~~~tvi~vtH~~~~~~~-~d~i~~l 552 (1156)
|+++||||||++||+.+.+.+.+.+.. .+++|+|++||+++++.. .++++++
T Consensus 148 p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~i~~~~~~~~~~ 202 (204)
T PRK13538 148 APLWILDEPFTAIDKQGVARLEALLAQHAEQGGMVILTTHQDLPVASDKVRKLRL 202 (204)
T ss_pred CCEEEEeCCCccCCHHHHHHHHHHHHHHHHCCCEEEEEecChhhhccCCceEEec
Confidence 999999999999999999998776543 357899999999999975 5677666
|
|
| >cd03252 ABCC_Hemolysin The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.1e-34 Score=313.61 Aligned_cols=202 Identities=27% Similarity=0.451 Sum_probs=182.2
Q ss_pred eEEEEEEEEEEcCCCCceeeCCCCCCHHHHHHHHhhcccCCCceEEEcCeeCCCCChHHHhhcCeeeccccccccccchh
Q 037346 947 EVNIRHLQVRYAPNLPLVLRGRTGSGKSTLIQTLFRIVESTAGHILIDGKDISLIGLHDLRTRLSIIPQDPTMFEGTTRS 1026 (1156)
Q Consensus 947 ~I~~~~Vsf~Y~~~~~~vL~G~SGsGKSTL~~lL~rl~~p~~G~I~idG~di~~i~~~~LR~~i~~VpQdp~LF~gTIr~ 1026 (1156)
...++|++|+.++++.++|.|+||||||||+++|+|+++|++|+|.+||.++...+...+|++++++||++.+|+.|+++
T Consensus 15 ~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~tv~~ 94 (237)
T cd03252 15 PVILDNISLRIKPGEVVGIVGRSGSGKSTLTKLIQRFYVPENGRVLVDGHDLALADPAWLRRQVGVVLQENVLFNRSIRD 94 (237)
T ss_pred ccceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCeehHhcCHHHHhhcEEEEcCCchhccchHHH
Confidence 34799999999999999999999999999999999999999999999999999888888999999999999999999999
Q ss_pred ccCCCCC-CCHHHHHHHHHHcCCChHHHhhcCCcccc------------------ccccccCCCEEEEecCCcCCCHHHH
Q 037346 1027 NLDPLEE-HADEQIWEALDKCQLGDEVRKKKGKLDSQ------------------GRVLLKKSKVLVLDEATASVDTATD 1087 (1156)
Q Consensus 1027 Nl~~~~~-~~deei~~al~~~~l~~~i~~lp~gl~s~------------------ARALLr~~~ILiLDEaTS~LD~~te 1087 (1156)
|+.+... ...+++.++++..++.+++..+|.++++. ||||+++|++|||||||++||+.+.
T Consensus 95 nl~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~LSgG~~qrv~laral~~~p~llllDEP~~~LD~~~~ 174 (237)
T cd03252 95 NIALADPGMSMERVIEAAKLAGAHDFISELPEGYDTIVGEQGAGLSGGQRQRIAIARALIHNPRILIFDEATSALDYESE 174 (237)
T ss_pred HhhccCCCCCHHHHHHHHHHcCcHHHHHhCcccccchhhcCCCcCCHHHHHHHHHHHHHhhCCCEEEEeCCcccCCHHHH
Confidence 9986543 34567788888888888888776555421 8999999999999999999999999
Q ss_pred HHHHHHHHHhcCCceEEEeecCcccccccCEEEEEeCcEEeeecChhHHhcCCCChHHHHHH
Q 037346 1088 NQIQQTLRQHFSDCTVVTIAHRITSVLDSAMVLLLNHGLIKEYDSPTKLLENKSSSFAQLVA 1149 (1156)
Q Consensus 1088 ~~I~~~l~~~~~~~TvI~IaHrl~ti~~~D~I~Vl~~G~IvE~G~~~eLl~~~~g~f~~l~~ 1149 (1156)
..+.+.|++..+++|+|++||+++.+..||+|++|++|++++.|++++++++ .+.|+.+++
T Consensus 175 ~~l~~~l~~~~~~~tiii~sH~~~~~~~~d~v~~l~~G~i~~~~~~~~~~~~-~~~~~~~~~ 235 (237)
T cd03252 175 HAIMRNMHDICAGRTVIIIAHRLSTVKNADRIIVMEKGRIVEQGSHDELLAE-NGLYAYLYQ 235 (237)
T ss_pred HHHHHHHHHhcCCCEEEEEeCCHHHHHhCCEEEEEECCEEEEEcCHHHHHhc-cChHHHHHh
Confidence 9999999998778999999999999989999999999999999999999975 678888765
|
coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy. |
| >PRK13540 cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.9e-34 Score=304.15 Aligned_cols=180 Identities=23% Similarity=0.298 Sum_probs=152.9
Q ss_pred EEEeeeEEEeCCCCCCCccccceEEeeCCeEEEEEcCCCCChHHHHHHHhCCCCCCCcEEEEcC------------eEEE
Q 037346 358 IEIIDGSFSWDFSSPNPTLRNINLKVFHGMRVAVCGTVGSGKSSCLSCILGGVPKESGIIRLCG------------TKAY 425 (1156)
Q Consensus 358 i~~~~~~f~~~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKSTll~~i~g~~~~~~G~i~~~g------------~~~~ 425 (1156)
++++|++++|+ +.++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++| +++|
T Consensus 2 l~~~~l~~~~~---~~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~v~~~g~~~~~~~~~~~~~i~~ 78 (200)
T PRK13540 2 LDVIELDFDYH---DQPLLQQISFHLPAGGLLHLKGSNGAGKTTLLKLIAGLLNPEKGEILFERQSIKKDLCTYQKQLCF 78 (200)
T ss_pred EEEEEEEEEeC---CeeEEeeeeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeeEEECCCccccCHHHHHhheEE
Confidence 68999999996 35799999999999999999999999999999999999999999999987 3689
Q ss_pred EecCCcCC-CccHHHHhhcCCC--CCHHHHHHHHHHhCCchhhhhCCCCCccccccCCCCCCHHHHHHHHHHHhhccCCC
Q 037346 426 VAQSPWIQ-SGKIEENILFGKE--MDRERYERVLEACSLKKDLEVLPFGDQTIIGERGINLSGGQKQRIQIARPLYQDAD 502 (1156)
Q Consensus 426 v~Q~~~~~-~~ti~eni~~~~~--~~~~~~~~~~~~~~l~~~~~~~~~g~~t~v~~~g~~LSgGqkqRi~lAral~~~~~ 502 (1156)
++|++.++ ..|++||+.++.. .++.+..++++..++.+.. .....+||||||||++||||++++|+
T Consensus 79 ~~q~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-----------~~~~~~LS~G~~~rv~laral~~~p~ 147 (200)
T PRK13540 79 VGHRSGINPYLTLRENCLYDIHFSPGAVGITELCRLFSLEHLI-----------DYPCGLLSSGQKRQVALLRLWMSKAK 147 (200)
T ss_pred eccccccCcCCCHHHHHHHHHhcCcchHHHHHHHHHcCCchhh-----------hCChhhcCHHHHHHHHHHHHHhcCCC
Confidence 99999875 5799999998632 2234556666666664322 23345799999999999999999999
Q ss_pred eeeeeCCCCCcCHHHHHHHHHHHHh--cCCCEEEEEccCCCccccCCEEEE
Q 037346 503 IFLLDDPFSPVDDHTGAHLFKFCWV--SSSKTVIYATHQVEFLPAADLILV 551 (1156)
Q Consensus 503 illlDep~s~lD~~~~~~i~~~~~~--~~~~tvi~vtH~~~~~~~~d~i~~ 551 (1156)
++||||||++||+.+.+.+.+.+.. .++.|+|++||+.+.+..||.-++
T Consensus 148 ~lilDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~~~~~d~~~~ 198 (200)
T PRK13540 148 LWLLDEPLVALDELSLLTIITKIQEHRAKGGAVLLTSHQDLPLNKADYEEY 198 (200)
T ss_pred EEEEeCCCcccCHHHHHHHHHHHHHHHHcCCEEEEEeCCchhccccchhhc
Confidence 9999999999999999998876643 458899999999999999987553
|
|
| >PRK09580 sufC cysteine desulfurase ATPase component; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-33 Score=312.74 Aligned_cols=196 Identities=22% Similarity=0.286 Sum_probs=154.7
Q ss_pred EEEeeeEEEeCCCCCCCccccceEEeeCCeEEEEEcCCCCChHHHHHHHhCCC--CCCCcEEEEcC--------------
Q 037346 358 IEIIDGSFSWDFSSPNPTLRNINLKVFHGMRVAVCGTVGSGKSSCLSCILGGV--PKESGIIRLCG-------------- 421 (1156)
Q Consensus 358 i~~~~~~f~~~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKSTll~~i~g~~--~~~~G~i~~~g-------------- 421 (1156)
++++|+++.|+ ++++|+|+||+|++|++++|+||||||||||+++|+|++ +|++|+|.++|
T Consensus 2 i~~~nl~~~~~---~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~~ 78 (248)
T PRK09580 2 LSIKDLHVSVE---DKAILRGLNLEVRPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGGTVEFKGKDLLELSPEDRAGE 78 (248)
T ss_pred eEEEEEEEEeC---CeeeeecceeEEcCCCEEEEECCCCCCHHHHHHHHcCCccCCCCceEEEECCCccccCCHHHHhhc
Confidence 78999999996 357999999999999999999999999999999999995 69999999987
Q ss_pred eEEEEecCCcCCCc-cHHHHhhcC-------CC---CC----HHHHHHHHHHhCCchhhhhCCCCCccccccCC-CCCCH
Q 037346 422 TKAYVAQSPWIQSG-KIEENILFG-------KE---MD----RERYERVLEACSLKKDLEVLPFGDQTIIGERG-INLSG 485 (1156)
Q Consensus 422 ~~~~v~Q~~~~~~~-ti~eni~~~-------~~---~~----~~~~~~~~~~~~l~~~~~~~~~g~~t~v~~~g-~~LSg 485 (1156)
.++|++|++.++.. |..+++.+. .. .+ .++.++.++..++.+ ++.+ ... .+|||
T Consensus 79 ~i~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-------~~~~---~~~~~~LS~ 148 (248)
T PRK09580 79 GIFMAFQYPVEIPGVSNQFFLQTALNAVRSYRGQEPLDRFDFQDLMEEKIALLKMPE-------DLLT---RSVNVGFSG 148 (248)
T ss_pred ceEEEecCchhccchhHHHHHHHhhhhhhcccccccchHHHHHHHHHHHHHHcCCCh-------hhcc---cCCCCCCCH
Confidence 27899999876543 544443221 10 11 122333444444421 1111 222 37999
Q ss_pred HHHHHHHHHHhhccCCCeeeeeCCCCCcCHHHHHHHHHHHHh--cCCCEEEEEccCCCcccc--CCEEEEEeCCeEEEcc
Q 037346 486 GQKQRIQIARPLYQDADIFLLDDPFSPVDDHTGAHLFKFCWV--SSSKTVIYATHQVEFLPA--ADLILVIKDGKITQAG 561 (1156)
Q Consensus 486 GqkqRi~lAral~~~~~illlDep~s~lD~~~~~~i~~~~~~--~~~~tvi~vtH~~~~~~~--~d~i~~l~~G~i~~~g 561 (1156)
|||||++||||++++|+++||||||++||+.+.+.+.+.+.. ..++|+|++||+++.+.. ||+|++|++|++++.|
T Consensus 149 G~~qrv~laral~~~p~illLDEPt~~LD~~~~~~l~~~l~~l~~~~~tiii~sH~~~~~~~~~~d~i~~l~~g~i~~~g 228 (248)
T PRK09580 149 GEKKRNDILQMAVLEPELCILDESDSGLDIDALKIVADGVNSLRDGKRSFIIVTHYQRILDYIKPDYVHVLYQGRIVKSG 228 (248)
T ss_pred HHHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHhhhCCEEEEEECCeEEEeC
Confidence 999999999999999999999999999999999988775533 347899999999998875 8999999999999999
Q ss_pred ChHHH
Q 037346 562 KYSDI 566 (1156)
Q Consensus 562 ~~~~l 566 (1156)
+++..
T Consensus 229 ~~~~~ 233 (248)
T PRK09580 229 DFTLV 233 (248)
T ss_pred CHHHH
Confidence 88744
|
|
| >COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-34 Score=289.72 Aligned_cols=195 Identities=28% Similarity=0.430 Sum_probs=167.5
Q ss_pred eEEEEEEEEEEc-------------CCCCceeeCCCCCCHHHHHHHHhhcccCCC-----ceEEEcCeeCCC--CChHHH
Q 037346 947 EVNIRHLQVRYA-------------PNLPLVLRGRTGSGKSTLIQTLFRIVESTA-----GHILIDGKDISL--IGLHDL 1006 (1156)
Q Consensus 947 ~I~~~~Vsf~Y~-------------~~~~~vL~G~SGsGKSTL~~lL~rl~~p~~-----G~I~idG~di~~--i~~~~L 1006 (1156)
.++++|+++-|. ++.-.+|.|||||||||++++|-|+.+... |+|.+||.||.+ ++.-.|
T Consensus 7 ~~~~~~l~~yYg~~~aL~~i~l~i~~~~VTAlIGPSGcGKST~LR~lNRmndl~~~~r~~G~v~~~g~ni~~~~~d~~~l 86 (253)
T COG1117 7 AIEVRDLNLYYGDKHALKDINLDIPKNKVTALIGPSGCGKSTLLRCLNRMNDLIPGARVEGEVLLDGKNIYDPKVDVVEL 86 (253)
T ss_pred eeEecceeEEECchhhhccCceeccCCceEEEECCCCcCHHHHHHHHHhhcccCcCceEEEEEEECCeeccCCCCCHHHH
Confidence 466667777664 344456779999999999999999999876 999999999987 579999
Q ss_pred hhcCeeeccccccccccchhccCCCC------C-CCHHHHHHHHHHcCCChHHHhh----cCCccc-------ccccccc
Q 037346 1007 RTRLSIIPQDPTMFEGTTRSNLDPLE------E-HADEQIWEALDKCQLGDEVRKK----KGKLDS-------QGRVLLK 1068 (1156)
Q Consensus 1007 R~~i~~VpQdp~LF~gTIr~Nl~~~~------~-~~deei~~al~~~~l~~~i~~l----p~gl~s-------~ARALLr 1068 (1156)
|+++|+|+|.|.-|..||+||+.++. + .-||-++++|++|.|||.+... +.+|.- .||||.-
T Consensus 87 Rr~vGMVFQkPnPFp~SIydNVayG~r~~g~~~~~ldeiVe~sLk~AaLWdEVKDrL~~sa~~LSGGQQQRLcIARalAv 166 (253)
T COG1117 87 RRRVGMVFQKPNPFPMSIYDNVAYGLRLHGIKDKELDEIVESSLKKAALWDEVKDRLHKSALGLSGGQQQRLCIARALAV 166 (253)
T ss_pred HHHheeeccCCCCCCchHHHHHHHhHHhhccchHHHHHHHHHHHHHhHhHHHhHHHhhCCccCCChhHHHHHHHHHHHhc
Confidence 99999999999999999999998752 1 1256689999999999988642 223322 2999999
Q ss_pred CCCEEEEecCCcCCCHHHHHHHHHHHHHhcCCceEEEeecCccccc-ccCEEEEEeCcEEeeecChhHHhcCCC
Q 037346 1069 KSKVLVLDEATASVDTATDNQIQQTLRQHFSDCTVVTIAHRITSVL-DSAMVLLLNHGLIKEYDSPTKLLENKS 1141 (1156)
Q Consensus 1069 ~~~ILiLDEaTS~LD~~te~~I~~~l~~~~~~~TvI~IaHrl~ti~-~~D~I~Vl~~G~IvE~G~~~eLl~~~~ 1141 (1156)
+|+||+||||||+|||.+..+|.+.|.++.++-|||+|||.+.-.. -+|+...+-.|++||+|.-+++..++.
T Consensus 167 ~PeVlLmDEPtSALDPIsT~kIEeLi~eLk~~yTIviVTHnmqQAaRvSD~taFf~~G~LvE~g~T~~iF~~P~ 240 (253)
T COG1117 167 KPEVLLMDEPTSALDPISTLKIEELITELKKKYTIVIVTHNMQQAARVSDYTAFFYLGELVEFGPTDKIFTNPK 240 (253)
T ss_pred CCcEEEecCcccccCchhHHHHHHHHHHHHhccEEEEEeCCHHHHHHHhHhhhhhcccEEEEEcCHHhhhcCcc
Confidence 9999999999999999999999999999999999999999997654 589999999999999999999998764
|
|
| >TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-34 Score=328.13 Aligned_cols=198 Identities=25% Similarity=0.381 Sum_probs=176.8
Q ss_pred eEEEEEEEEEEcCCCCceeeCCCCCCHHHHHHHHhhcccCCCceEEEcCeeCCCCChHHH----hhcCeeeccccccccc
Q 037346 947 EVNIRHLQVRYAPNLPLVLRGRTGSGKSTLIQTLFRIVESTAGHILIDGKDISLIGLHDL----RTRLSIIPQDPTMFEG 1022 (1156)
Q Consensus 947 ~I~~~~Vsf~Y~~~~~~vL~G~SGsGKSTL~~lL~rl~~p~~G~I~idG~di~~i~~~~L----R~~i~~VpQdp~LF~g 1022 (1156)
...++|++|...+++.++|.|+||||||||+++|.|+++|++|+|++||.|+...+...+ |+.++||||++.+|..
T Consensus 6 ~~~l~~vs~~i~~Gei~~l~G~sGsGKSTLLr~L~Gl~~p~~G~I~i~G~~i~~~~~~~~~~~rr~~i~~v~Q~~~l~~~ 85 (363)
T TIGR01186 6 KKGVNDADLAIAKGEIFVIMGLSGSGKSTTVRMLNRLIEPTAGQIFIDGENIMKQSPVELREVRRKKIGMVFQQFALFPH 85 (363)
T ss_pred ceeEEeeEEEEcCCCEEEEECCCCChHHHHHHHHhCCCCCCceEEEECCEECCcCCHHHHHHHHhCcEEEEECCCcCCCC
Confidence 457999999999999999999999999999999999999999999999999999998888 7899999999999974
Q ss_pred -cchhccCCCC---CC----CHHHHHHHHHHcCCChHHHhhcCCcccc-------ccccccCCCEEEEecCCcCCCHHHH
Q 037346 1023 -TTRSNLDPLE---EH----ADEQIWEALDKCQLGDEVRKKKGKLDSQ-------GRVLLKKSKVLVLDEATASVDTATD 1087 (1156)
Q Consensus 1023 -TIr~Nl~~~~---~~----~deei~~al~~~~l~~~i~~lp~gl~s~-------ARALLr~~~ILiLDEaTS~LD~~te 1087 (1156)
|+++|+.+.. .. ..+++.++|+.++|.++....|..|..+ ||||+++|+|||||||||+||+.+.
T Consensus 86 ~TV~eNi~~~~~~~~~~~~~~~~~~~~~l~~vgL~~~~~~~p~~LSGGq~QRV~lARAL~~~p~iLLlDEP~saLD~~~r 165 (363)
T TIGR01186 86 MTILQNTSLGPELLGWPEQERKEKALELLKLVGLEEYEHRYPDELSGGMQQRVGLARALAAEPDILLMDEAFSALDPLIR 165 (363)
T ss_pred CCHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCchhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHH
Confidence 9999996431 11 2356889999999999998888877655 8999999999999999999999999
Q ss_pred HHHHHHHHHhc--CCceEEEeecCcccc-cccCEEEEEeCcEEeeecChhHHhcCCCChH
Q 037346 1088 NQIQQTLRQHF--SDCTVVTIAHRITSV-LDSAMVLLLNHGLIKEYDSPTKLLENKSSSF 1144 (1156)
Q Consensus 1088 ~~I~~~l~~~~--~~~TvI~IaHrl~ti-~~~D~I~Vl~~G~IvE~G~~~eLl~~~~g~f 1144 (1156)
+.+++.+.++. .++|+|+|||+++.+ .-||+|++|++|+|++.|+|++++.++...|
T Consensus 166 ~~l~~~l~~l~~~~~~Tii~vTHd~~ea~~~~drI~vl~~G~iv~~g~~~ei~~~p~~~~ 225 (363)
T TIGR01186 166 DSMQDELKKLQATLQKTIVFITHDLDEAIRIGDRIVIMKAGEIVQVGTPDEILRNPANEY 225 (363)
T ss_pred HHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeCCEEEeeCCHHHHHhCcccHH
Confidence 99999998764 378999999999875 5599999999999999999999998654433
|
This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact |
| >COG4161 ArtP ABC-type arginine transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.9e-34 Score=272.42 Aligned_cols=198 Identities=26% Similarity=0.377 Sum_probs=170.2
Q ss_pred cEEEeeeEEEeCCCCCCCccccceEEeeCCeEEEEEcCCCCChHHHHHHHhCCCCCCCcEEEEcCe--------------
Q 037346 357 AIEIIDGSFSWDFSSPNPTLRNINLKVFHGMRVAVCGTVGSGKSSCLSCILGGVPKESGIIRLCGT-------------- 422 (1156)
Q Consensus 357 ~i~~~~~~f~~~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKSTll~~i~g~~~~~~G~i~~~g~-------------- 422 (1156)
.|++++++|.|+ ...+|-||+|+.+.||.+.+.||+|+|||||++.+.=+--|.+|+..+.|+
T Consensus 2 sirv~~in~~yg---~~q~lfdi~l~~~~getlvllgpsgagkssllr~lnlle~p~sg~l~ia~~~fd~s~~~~~k~i~ 78 (242)
T COG4161 2 SIQLNGINCFYG---AHQALFDITLDCPEGETLVLLGPSGAGKSSLLRVLNLLEMPRSGTLNIAGNHFDFSKTPSDKAIR 78 (242)
T ss_pred ceEEcccccccc---cchheeeeeecCCCCCEEEEECCCCCchHHHHHHHHHHhCCCCCeEEecccccccccCccHHHHH
Confidence 488999999997 357999999999999999999999999999999999888899999988762
Q ss_pred -----EEEEecCCcCCC-ccHHHHhhc------CCCC--CHHHHHHHHHHhCCchhhhhCCCCCccccccCCCCCCHHHH
Q 037346 423 -----KAYVAQSPWIQS-GKIEENILF------GKEM--DRERYERVLEACSLKKDLEVLPFGDQTIIGERGINLSGGQK 488 (1156)
Q Consensus 423 -----~~~v~Q~~~~~~-~ti~eni~~------~~~~--~~~~~~~~~~~~~l~~~~~~~~~g~~t~v~~~g~~LSgGqk 488 (1156)
+|+|+|+-.+.+ .||.||+.- |.+. ...+..+.++...|.+..+.+| -.|||||+
T Consensus 79 ~lr~~vgmvfqqy~lwphltv~enlieap~kv~gl~~~qa~~~a~ellkrlrl~~~adr~p-----------lhlsggqq 147 (242)
T COG4161 79 DLRRNVGMVFQQYNLWPHLTVQENLIEAPCRVLGLSKDQALARAEKLLKRLRLKPYADRYP-----------LHLSGGQQ 147 (242)
T ss_pred HHHHhhhhhhhhhccCchhHHHHHHHhhhHHHhCCCHHHHHHHHHHHHHHhccccccccCc-----------eecccchh
Confidence 699999987765 599999864 2222 2345567888888888877777 47999999
Q ss_pred HHHHHHHhhccCCCeeeeeCCCCCcCHHHHHHHHHHHHh--cCCCEEEEEccCCCcccc-CCEEEEEeCCeEEEccChHH
Q 037346 489 QRIQIARPLYQDADIFLLDDPFSPVDDHTGAHLFKFCWV--SSSKTVIYATHQVEFLPA-ADLILVIKDGKITQAGKYSD 565 (1156)
Q Consensus 489 qRi~lAral~~~~~illlDep~s~lD~~~~~~i~~~~~~--~~~~tvi~vtH~~~~~~~-~d~i~~l~~G~i~~~g~~~~ 565 (1156)
|||+|||||+.+|+++++||||++|||+...++.+.+.. ..|.|-++|||..+..+. |.+|+.|++|+|++.|+.+-
T Consensus 148 qrvaiaralmmkpqvllfdeptaaldpeitaqvv~iikel~~tgitqvivthev~va~k~as~vvyme~g~ive~g~a~~ 227 (242)
T COG4161 148 QRVAIARALMMEPQVLLFDEPTAALDPEITAQIVSIIKELAETGITQVIVTHEVEVARKTASRVVYMENGHIVEQGDASC 227 (242)
T ss_pred hhHHHHHHHhcCCcEEeecCcccccCHHHHHHHHHHHHHHHhcCceEEEEEeehhHHHhhhhheEeeecCeeEeecchhh
Confidence 999999999999999999999999999988888775533 458899999999999875 99999999999999999876
Q ss_pred HHh
Q 037346 566 ILN 568 (1156)
Q Consensus 566 l~~ 568 (1156)
+.+
T Consensus 228 ft~ 230 (242)
T COG4161 228 FTE 230 (242)
T ss_pred ccC
Confidence 544
|
|
| >PRK13539 cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-33 Score=301.89 Aligned_cols=183 Identities=26% Similarity=0.290 Sum_probs=156.1
Q ss_pred cEEEeeeEEEeCCCCCCCccccceEEeeCCeEEEEEcCCCCChHHHHHHHhCCCCCCCcEEEEcCe----------EEEE
Q 037346 357 AIEIIDGSFSWDFSSPNPTLRNINLKVFHGMRVAVCGTVGSGKSSCLSCILGGVPKESGIIRLCGT----------KAYV 426 (1156)
Q Consensus 357 ~i~~~~~~f~~~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKSTll~~i~g~~~~~~G~i~~~g~----------~~~v 426 (1156)
.++++|+++.|+ +..+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|. ++|+
T Consensus 2 ~l~~~~l~~~~~---~~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 78 (207)
T PRK13539 2 MLEGEDLACVRG---GRVLFSGLSFTLAAGEALVLTGPNGSGKTTLLRLIAGLLPPAAGTIKLDGGDIDDPDVAEACHYL 78 (207)
T ss_pred EEEEEeEEEEEC---CeEEEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEeCcchhhHhhcEEe
Confidence 478999999996 346999999999999999999999999999999999999999999999883 5899
Q ss_pred ecCCcCC-CccHHHHhhcCCC---CCHHHHHHHHHHhCCchhhhhCCCCCccccccCCCCCCHHHHHHHHHHHhhccCCC
Q 037346 427 AQSPWIQ-SGKIEENILFGKE---MDRERYERVLEACSLKKDLEVLPFGDQTIIGERGINLSGGQKQRIQIARPLYQDAD 502 (1156)
Q Consensus 427 ~Q~~~~~-~~ti~eni~~~~~---~~~~~~~~~~~~~~l~~~~~~~~~g~~t~v~~~g~~LSgGqkqRi~lAral~~~~~ 502 (1156)
+|++.++ ..|++||+.+... .++++..++++.+++.+... ....+||||||||++||||++++|+
T Consensus 79 ~~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~-----------~~~~~LS~G~~qrl~la~al~~~p~ 147 (207)
T PRK13539 79 GHRNAMKPALTVAENLEFWAAFLGGEELDIAAALEAVGLAPLAH-----------LPFGYLSAGQKRRVALARLLVSNRP 147 (207)
T ss_pred cCCCcCCCCCcHHHHHHHHHHhcCCcHHHHHHHHHHcCCHHHHc-----------CChhhcCHHHHHHHHHHHHHhcCCC
Confidence 9887654 5799999976432 23455777888888865332 2335899999999999999999999
Q ss_pred eeeeeCCCCCcCHHHHHHHHHHHHh--cCCCEEEEEccCCCccccCCEEEEEeC
Q 037346 503 IFLLDDPFSPVDDHTGAHLFKFCWV--SSSKTVIYATHQVEFLPAADLILVIKD 554 (1156)
Q Consensus 503 illlDep~s~lD~~~~~~i~~~~~~--~~~~tvi~vtH~~~~~~~~d~i~~l~~ 554 (1156)
++||||||++||+.+.+++.+.+.. .+|+|+|++||+++.++. |+++.++.
T Consensus 148 llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~-~~~~~~~~ 200 (207)
T PRK13539 148 IWILDEPTAALDAAAVALFAELIRAHLAQGGIVIAATHIPLGLPG-ARELDLGP 200 (207)
T ss_pred EEEEeCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCchhhcc-CcEEeecC
Confidence 9999999999999999998876643 458999999999999887 99988754
|
|
| >COG4148 ModC ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-34 Score=297.88 Aligned_cols=181 Identities=25% Similarity=0.459 Sum_probs=162.8
Q ss_pred cceEEeeCCeEEEEEcCCCCChHHHHHHHhCCCCCCCcEEEEcCe-----------------EEEEecCCcCCCc-cHHH
Q 037346 378 NINLKVFHGMRVAVCGTVGSGKSSCLSCILGGVPKESGIIRLCGT-----------------KAYVAQSPWIQSG-KIEE 439 (1156)
Q Consensus 378 ~i~l~i~~g~~~~ivG~~GsGKSTll~~i~g~~~~~~G~i~~~g~-----------------~~~v~Q~~~~~~~-ti~e 439 (1156)
++||+.+.-.++||-|+||||||||+|+|.|+..|++|.|.+||+ +|||+|+.-+|.. ||+.
T Consensus 16 ~a~~~~p~~GvTAlFG~SGsGKTslin~IaGL~rPdeG~I~lngr~L~Ds~k~i~lp~~~RriGYVFQDARLFpH~tVrg 95 (352)
T COG4148 16 DANFTLPARGITALFGPSGSGKTSLINMIAGLTRPDEGRIELNGRVLVDAEKGIFLPPEKRRIGYVFQDARLFPHYTVRG 95 (352)
T ss_pred EEeccCCCCceEEEecCCCCChhhHHHHHhccCCccccEEEECCEEeecccCCcccChhhheeeeEeeccccccceEEec
Confidence 578888887899999999999999999999999999999999993 6999999999865 9999
Q ss_pred HhhcCCCCC-HHHHHHHHHHhCCchhhhhCCCCCccccccCCCCCCHHHHHHHHHHHhhccCCCeeeeeCCCCCcCHHHH
Q 037346 440 NILFGKEMD-RERYERVLEACSLKKDLEVLPFGDQTIIGERGINLSGGQKQRIQIARPLYQDADIFLLDDPFSPVDDHTG 518 (1156)
Q Consensus 440 ni~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~g~~t~v~~~g~~LSgGqkqRi~lAral~~~~~illlDep~s~lD~~~~ 518 (1156)
|+.||.... ...+++++...++.+.++++| .+||||+||||||+|||+.+|++||||||+|+||...+
T Consensus 96 NL~YG~~~~~~~~fd~iv~lLGI~hLL~R~P-----------~~LSGGEkQRVAIGRALLt~P~LLLmDEPLaSLD~~RK 164 (352)
T COG4148 96 NLRYGMWKSMRAQFDQLVALLGIEHLLDRYP-----------GTLSGGEKQRVAIGRALLTAPELLLMDEPLASLDLPRK 164 (352)
T ss_pred chhhhhcccchHhHHHHHHHhCcHHHHhhCC-----------CccCcchhhHHHHHHHHhcCCCeeeecCchhhcccchh
Confidence 999998754 668899999999999888777 58999999999999999999999999999999999998
Q ss_pred HHHHHHHHh---cCCCEEEEEccCCCcc-ccCCEEEEEeCCeEEEccChHHHHhc
Q 037346 519 AHLFKFCWV---SSSKTVIYATHQVEFL-PAADLILVIKDGKITQAGKYSDILNS 569 (1156)
Q Consensus 519 ~~i~~~~~~---~~~~tvi~vtH~~~~~-~~~d~i~~l~~G~i~~~g~~~~l~~~ 569 (1156)
++++-.+-+ ..+--++.|||.++.+ +.||+|++|++|++...|..++++..
T Consensus 165 ~EilpylERL~~e~~IPIlYVSHS~~Ev~RLAd~vV~le~GkV~A~g~~e~v~~~ 219 (352)
T COG4148 165 REILPYLERLRDEINIPILYVSHSLDEVLRLADRVVVLENGKVKASGPLEEVWGS 219 (352)
T ss_pred hHHHHHHHHHHHhcCCCEEEEecCHHHHHhhhheEEEecCCeEEecCcHHHHhcC
Confidence 888765533 3456799999999876 56999999999999999999998864
|
|
| >cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.8e-34 Score=298.81 Aligned_cols=176 Identities=30% Similarity=0.444 Sum_probs=141.7
Q ss_pred EEeeeEEEeCCCCCCCccccceEEeeCCeEEEEEcCCCCChHHHHHHHhCCCCCCCcEEEEcCeEEEEecCCcCCCccHH
Q 037346 359 EIIDGSFSWDFSSPNPTLRNINLKVFHGMRVAVCGTVGSGKSSCLSCILGGVPKESGIIRLCGTKAYVAQSPWIQSGKIE 438 (1156)
Q Consensus 359 ~~~~~~f~~~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKSTll~~i~g~~~~~~G~i~~~g~~~~v~Q~~~~~~~ti~ 438 (1156)
+++|+++.|+ ++++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|..- .+ ......+
T Consensus 1 ~~~~l~~~~~---~~~~l~~~~~~i~~G~~~~l~G~nGsGKStLl~~i~G~~~~~~G~v~~~g~~~--~~---~~~~~~~ 72 (180)
T cd03214 1 EVENLSVGYG---GRTVLDDLSLSIEAGEIVGILGPNGAGKSTLLKTLAGLLKPSSGEILLDGKDL--AS---LSPKELA 72 (180)
T ss_pred CeeEEEEEEC---CeeeEeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEC--Cc---CCHHHHH
Confidence 4789999996 25799999999999999999999999999999999999999999999998521 11 0001122
Q ss_pred HHhhcCCCCCHHHHHHHHHHhCCchhhhhCCCCCccccccCCCCCCHHHHHHHHHHHhhccCCCeeeeeCCCCCcCHHHH
Q 037346 439 ENILFGKEMDRERYERVLEACSLKKDLEVLPFGDQTIIGERGINLSGGQKQRIQIARPLYQDADIFLLDDPFSPVDDHTG 518 (1156)
Q Consensus 439 eni~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~t~v~~~g~~LSgGqkqRi~lAral~~~~~illlDep~s~lD~~~~ 518 (1156)
..+.+- .++++.+++.+.+. ..+.+||||||||++||||++.+|+++||||||++||+.+.
T Consensus 73 ~~i~~~--------~q~l~~~gl~~~~~-----------~~~~~LS~G~~qrl~laral~~~p~llllDEP~~~LD~~~~ 133 (180)
T cd03214 73 RKIAYV--------PQALELLGLAHLAD-----------RPFNELSGGERQRVLLARALAQEPPILLLDEPTSHLDIAHQ 133 (180)
T ss_pred HHHhHH--------HHHHHHcCCHhHhc-----------CCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHH
Confidence 222211 11677777765443 34578999999999999999999999999999999999999
Q ss_pred HHHHHHHHh--cC-CCEEEEEccCCCccc-cCCEEEEEeCCeEEEcc
Q 037346 519 AHLFKFCWV--SS-SKTVIYATHQVEFLP-AADLILVIKDGKITQAG 561 (1156)
Q Consensus 519 ~~i~~~~~~--~~-~~tvi~vtH~~~~~~-~~d~i~~l~~G~i~~~g 561 (1156)
+.+.+.+.. .+ ++|+|++||+++.+. .||++++|++|++.+.|
T Consensus 134 ~~~~~~l~~~~~~~~~tiii~sh~~~~~~~~~d~~~~l~~g~i~~~~ 180 (180)
T cd03214 134 IELLELLRRLARERGKTVVMVLHDLNLAARYADRVILLKDGRIVAQG 180 (180)
T ss_pred HHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEecC
Confidence 988776543 23 789999999999974 59999999999998653
|
Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters. |
| >cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos) | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-33 Score=290.57 Aligned_cols=159 Identities=25% Similarity=0.385 Sum_probs=130.3
Q ss_pred EEEeeeEEEeCCCCCCCccccceEEeeCCeEEEEEcCCCCChHHHHHHHhCCCCCCCcEEEEcCeEEEEecCCcCCCccH
Q 037346 358 IEIIDGSFSWDFSSPNPTLRNINLKVFHGMRVAVCGTVGSGKSSCLSCILGGVPKESGIIRLCGTKAYVAQSPWIQSGKI 437 (1156)
Q Consensus 358 i~~~~~~f~~~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKSTll~~i~g~~~~~~G~i~~~g~~~~v~Q~~~~~~~ti 437 (1156)
++++|++++|+ +.++++|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|..- .. .+.
T Consensus 1 l~~~~l~~~~~---~~~vl~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~v~~~g~~~--~~------~~~ 69 (163)
T cd03216 1 LELRGITKRFG---GVKALDGVSLSVRRGEVHALLGENGAGKSTLMKILSGLYKPDSGEILVDGKEV--SF------ASP 69 (163)
T ss_pred CEEEEEEEEEC---CeEEEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEC--Cc------CCH
Confidence 46899999996 34799999999999999999999999999999999999999999999998410 00 000
Q ss_pred HHHhhcCCCCCHHHHHHHHHHhCCchhhhhCCCCCccccccCCCCCCHHHHHHHHHHHhhccCCCeeeeeCCCCCcCHHH
Q 037346 438 EENILFGKEMDRERYERVLEACSLKKDLEVLPFGDQTIIGERGINLSGGQKQRIQIARPLYQDADIFLLDDPFSPVDDHT 517 (1156)
Q Consensus 438 ~eni~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~t~v~~~g~~LSgGqkqRi~lAral~~~~~illlDep~s~lD~~~ 517 (1156)
++ .+. +..+. .+ +||||||||++||||++++|+++||||||++||+.+
T Consensus 70 ~~-----------~~~---~~i~~------~~------------qLS~G~~qrl~laral~~~p~illlDEP~~~LD~~~ 117 (163)
T cd03216 70 RD-----------ARR---AGIAM------VY------------QLSVGERQMVEIARALARNARLLILDEPTAALTPAE 117 (163)
T ss_pred HH-----------HHh---cCeEE------EE------------ecCHHHHHHHHHHHHHhcCCCEEEEECCCcCCCHHH
Confidence 00 000 00000 00 199999999999999999999999999999999999
Q ss_pred HHHHHHHHHh--cCCCEEEEEccCCCccc-cCCEEEEEeCCeEEE
Q 037346 518 GAHLFKFCWV--SSSKTVIYATHQVEFLP-AADLILVIKDGKITQ 559 (1156)
Q Consensus 518 ~~~i~~~~~~--~~~~tvi~vtH~~~~~~-~~d~i~~l~~G~i~~ 559 (1156)
++.+.+.+.. .++.|+|++||+++.+. .||++++|++|++++
T Consensus 118 ~~~l~~~l~~~~~~~~tiii~sh~~~~~~~~~d~~~~l~~g~i~~ 162 (163)
T cd03216 118 VERLFKVIRRLRAQGVAVIFISHRLDEVFEIADRVTVLRDGRVVG 162 (163)
T ss_pred HHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEe
Confidence 9998876644 35889999999999876 599999999999874
|
The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter. |
| >PRK13549 xylose transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.3e-34 Score=346.55 Aligned_cols=201 Identities=19% Similarity=0.298 Sum_probs=165.5
Q ss_pred ccEEEeeeEEEeCCCCCCCccccceEEeeCCeEEEEEcCCCCChHHHHHHHhCCCC-CCCcEEEEcCe------------
Q 037346 356 TAIEIIDGSFSWDFSSPNPTLRNINLKVFHGMRVAVCGTVGSGKSSCLSCILGGVP-KESGIIRLCGT------------ 422 (1156)
Q Consensus 356 ~~i~~~~~~f~~~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKSTll~~i~g~~~-~~~G~i~~~g~------------ 422 (1156)
..++++|+++.|+..++.++|+|+||+|++||+++|+||||||||||+++|+|+++ |++|+|.++|.
T Consensus 258 ~~l~~~~l~~~~~~~~~~~vl~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~~~~~G~i~~~g~~~~~~~~~~~~~ 337 (506)
T PRK13549 258 VILEVRNLTAWDPVNPHIKRVDDVSFSLRRGEILGIAGLVGAGRTELVQCLFGAYPGRWEGEIFIDGKPVKIRNPQQAIA 337 (506)
T ss_pred ceEEEecCccccccccccccccceeeEEcCCcEEEEeCCCCCCHHHHHHHHhCCCCCCCCcEEEECCEECCCCCHHHHHH
Confidence 35999999999953223579999999999999999999999999999999999998 59999999872
Q ss_pred --EEEEecCC---cCC-CccHHHHhhcCCC--------CCH----HHHHHHHHHhCCchhhhhCCCCCccccccCCCCCC
Q 037346 423 --KAYVAQSP---WIQ-SGKIEENILFGKE--------MDR----ERYERVLEACSLKKDLEVLPFGDQTIIGERGINLS 484 (1156)
Q Consensus 423 --~~~v~Q~~---~~~-~~ti~eni~~~~~--------~~~----~~~~~~~~~~~l~~~~~~~~~g~~t~v~~~g~~LS 484 (1156)
++|++|+| .++ +.|+.||+.++.. .+. ++.+++++.+++... .......+||
T Consensus 338 ~~i~~v~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~----------~~~~~~~~LS 407 (506)
T PRK13549 338 QGIAMVPEDRKRDGIVPVMGVGKNITLAALDRFTGGSRIDDAAELKTILESIQRLKVKTA----------SPELAIARLS 407 (506)
T ss_pred CCCEEeCcchhhCCCcCCCCHHHHhhhhhhhhhccCcccChHHHHHHHHHHHHhcCccCC----------CcccccccCC
Confidence 69999996 344 4699999987521 121 234556666666311 1234457899
Q ss_pred HHHHHHHHHHHhhccCCCeeeeeCCCCCcCHHHHHHHHHHHHh--cCCCEEEEEccCCCccc-cCCEEEEEeCCeEEEcc
Q 037346 485 GGQKQRIQIARPLYQDADIFLLDDPFSPVDDHTGAHLFKFCWV--SSSKTVIYATHQVEFLP-AADLILVIKDGKITQAG 561 (1156)
Q Consensus 485 gGqkqRi~lAral~~~~~illlDep~s~lD~~~~~~i~~~~~~--~~~~tvi~vtH~~~~~~-~~d~i~~l~~G~i~~~g 561 (1156)
||||||++||||++.+|++|||||||++||+.+.+.+++.+.. .+|+|||++||+++.+. .||++++|++|+++..|
T Consensus 408 gG~kqrv~lA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tvi~~sHd~~~~~~~~d~v~~l~~G~i~~~~ 487 (506)
T PRK13549 408 GGNQQKAVLAKCLLLNPKILILDEPTRGIDVGAKYEIYKLINQLVQQGVAIIVISSELPEVLGLSDRVLVMHEGKLKGDL 487 (506)
T ss_pred HHHHHHHHHHHHHhhCCCEEEEcCCCCCcCHhHHHHHHHHHHHHHHCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEEe
Confidence 9999999999999999999999999999999999998776543 45899999999999886 59999999999999988
Q ss_pred ChHHH
Q 037346 562 KYSDI 566 (1156)
Q Consensus 562 ~~~~l 566 (1156)
+.+++
T Consensus 488 ~~~~~ 492 (506)
T PRK13549 488 INHNL 492 (506)
T ss_pred ccccC
Confidence 87665
|
|
| >COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.3e-34 Score=300.59 Aligned_cols=187 Identities=26% Similarity=0.360 Sum_probs=159.7
Q ss_pred cEEEeeeEEEeCCCCC------CCccccceEEeeCCeEEEEEcCCCCChHHHHHHHhCCCCCCCcEEEEcCeEEEEecCC
Q 037346 357 AIEIIDGSFSWDFSSP------NPTLRNINLKVFHGMRVAVCGTVGSGKSSCLSCILGGVPKESGIIRLCGTKAYVAQSP 430 (1156)
Q Consensus 357 ~i~~~~~~f~~~~~~~------~~~l~~i~l~i~~g~~~~ivG~~GsGKSTll~~i~g~~~~~~G~i~~~g~~~~v~Q~~ 430 (1156)
.++++|+++.|+.... ..+++||||+|++||+++|||+|||||||+-++|+|+++|++|+|.++|+...-.
T Consensus 4 ll~v~~l~k~f~~~~~~~~~~~v~avd~Vsf~i~~ge~~glVGESG~GKSTlgr~i~~L~~pt~G~i~f~g~~i~~~--- 80 (268)
T COG4608 4 LLEVKNLKKYFPVGKGFGKKRYVKAVDGVSFSIKEGETLGLVGESGCGKSTLGRLILGLEEPTSGEILFEGKDITKL--- 80 (268)
T ss_pred eEEEeccEEEEecccccCcccceEEecceeEEEcCCCEEEEEecCCCCHHHHHHHHHcCcCCCCceEEEcCcchhhc---
Confidence 5889999999975321 3689999999999999999999999999999999999999999999998641100
Q ss_pred cCCCccHHHHhhcCCCCCHHHHHHHHHHhCCchh-hhhCCCCCccccccCCCCCCHHHHHHHHHHHhhccCCCeeeeeCC
Q 037346 431 WIQSGKIEENILFGKEMDRERYERVLEACSLKKD-LEVLPFGDQTIIGERGINLSGGQKQRIQIARPLYQDADIFLLDDP 509 (1156)
Q Consensus 431 ~~~~~ti~eni~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~g~~t~v~~~g~~LSgGqkqRi~lAral~~~~~illlDep 509 (1156)
+ .....+++.+.++.+++..+ +.+. ..+|||||||||+|||||.-+|+++++|||
T Consensus 81 -----~--------~~~~~~~v~elL~~Vgl~~~~~~ry-----------PhelSGGQrQRi~IARALal~P~liV~DEp 136 (268)
T COG4608 81 -----S--------KEERRERVLELLEKVGLPEEFLYRY-----------PHELSGGQRQRIGIARALALNPKLIVADEP 136 (268)
T ss_pred -----c--------hhHHHHHHHHHHHHhCCCHHHhhcC-----------CcccCchhhhhHHHHHHHhhCCcEEEecCc
Confidence 0 22234678889999998764 4444 468999999999999999999999999999
Q ss_pred CCCcCHHHHHHHHHHHHh---cCCCEEEEEccCCCcccc-CCEEEEEeCCeEEEccChHHHHhcC
Q 037346 510 FSPVDDHTGAHLFKFCWV---SSSKTVIYATHQVEFLPA-ADLILVIKDGKITQAGKYSDILNSG 570 (1156)
Q Consensus 510 ~s~lD~~~~~~i~~~~~~---~~~~tvi~vtH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~~~~ 570 (1156)
+|+||...+.++.+.+.. ..|-|.++||||++.+++ ||+|.+|..|+|++.|+.+++....
T Consensus 137 vSaLDvSiqaqIlnLL~dlq~~~~lt~lFIsHDL~vv~~isdri~VMy~G~iVE~g~~~~~~~~p 201 (268)
T COG4608 137 VSALDVSVQAQILNLLKDLQEELGLTYLFISHDLSVVRYISDRIAVMYLGKIVEIGPTEEVFSNP 201 (268)
T ss_pred hhhcchhHHHHHHHHHHHHHHHhCCeEEEEEEEHHhhhhhcccEEEEecCceeEecCHHHHhhCC
Confidence 999999999998876543 458899999999999986 9999999999999999999998753
|
|
| >COG1127 Ttg2A ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7e-34 Score=291.34 Aligned_cols=204 Identities=25% Similarity=0.399 Sum_probs=174.0
Q ss_pred CeEEEEEEEEEEcCCCCceeeCCCCCCHHHHHHHHhhcccCCCceEEEcCeeCCCCChH---HHhhcCeeeccccccccc
Q 037346 946 GEVNIRHLQVRYAPNLPLVLRGRTGSGKSTLIQTLFRIVESTAGHILIDGKDISLIGLH---DLRTRLSIIPQDPTMFEG 1022 (1156)
Q Consensus 946 g~I~~~~Vsf~Y~~~~~~vL~G~SGsGKSTL~~lL~rl~~p~~G~I~idG~di~~i~~~---~LR~~i~~VpQdp~LF~g 1022 (1156)
+.+.++||+++..+++-.++.|+||||||||++++.|+..|++|+|.|+|.|+.+++-+ .+|+++|+++|.--||+.
T Consensus 20 ~~~Ild~v~l~V~~Gei~~iiGgSGsGKStlLr~I~Gll~P~~GeI~i~G~~i~~ls~~~~~~ir~r~GvlFQ~gALFss 99 (263)
T COG1127 20 DRVILDGVDLDVPRGEILAILGGSGSGKSTLLRLILGLLRPDKGEILIDGEDIPQLSEEELYEIRKRMGVLFQQGALFSS 99 (263)
T ss_pred CEEEecCceeeecCCcEEEEECCCCcCHHHHHHHHhccCCCCCCeEEEcCcchhccCHHHHHHHHhheeEEeeccccccc
Confidence 35677777777778888888899999999999999999999999999999999998864 569999999999999987
Q ss_pred -cchhccCC-CCC---CCHHH----HHHHHHHcCCChH-HHhhcCCcccc-------ccccccCCCEEEEecCCcCCCHH
Q 037346 1023 -TTRSNLDP-LEE---HADEQ----IWEALDKCQLGDE-VRKKKGKLDSQ-------GRVLLKKSKVLVLDEATASVDTA 1085 (1156)
Q Consensus 1023 -TIr~Nl~~-~~~---~~dee----i~~al~~~~l~~~-i~~lp~gl~s~-------ARALLr~~~ILiLDEaTS~LD~~ 1085 (1156)
||+||+.+ ..+ .++++ +..-|+.|||... ....|..|.-+ ||||.-+|+||++|||||+|||.
T Consensus 100 ltV~eNVafplre~~~lp~~~i~~lv~~KL~~VGL~~~~~~~~PsELSGGM~KRvaLARAialdPell~~DEPtsGLDPI 179 (263)
T COG1127 100 LTVFENVAFPLREHTKLPESLIRELVLMKLELVGLRGAAADLYPSELSGGMRKRVALARAIALDPELLFLDEPTSGLDPI 179 (263)
T ss_pred cchhHhhheehHhhccCCHHHHHHHHHHHHHhcCCChhhhhhCchhhcchHHHHHHHHHHHhcCCCEEEecCCCCCCCcc
Confidence 99999975 222 33443 4466889999988 55567666544 89999999999999999999999
Q ss_pred HHHHHHHHHHHhcC--CceEEEeecCcccccc-cCEEEEEeCcEEeeecChhHHhcCCCChHHHHHH
Q 037346 1086 TDNQIQQTLRQHFS--DCTVVTIAHRITSVLD-SAMVLLLNHGLIKEYDSPTKLLENKSSSFAQLVA 1149 (1156)
Q Consensus 1086 te~~I~~~l~~~~~--~~TvI~IaHrl~ti~~-~D~I~Vl~~G~IvE~G~~~eLl~~~~g~f~~l~~ 1149 (1156)
+...+-+.|+++.+ +.|+++|||+++++.. ||||+++.+|+|+-.|+++||.+.++...++.++
T Consensus 180 ~a~~~~~LI~~L~~~lg~T~i~VTHDl~s~~~i~Drv~~L~~gkv~~~Gt~~el~~sd~P~v~qf~~ 246 (263)
T COG1127 180 SAGVIDELIRELNDALGLTVIMVTHDLDSLLTIADRVAVLADGKVIAEGTPEELLASDDPWVRQFFN 246 (263)
T ss_pred hHHHHHHHHHHHHHhhCCEEEEEECChHHHHhhhceEEEEeCCEEEEeCCHHHHHhCCCHHHHHHhc
Confidence 99998888877643 7899999999998876 7999999999999999999999987777666654
|
|
| >TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2 | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-33 Score=344.83 Aligned_cols=207 Identities=22% Similarity=0.329 Sum_probs=168.6
Q ss_pred ccEEEeeeEEEeCC--CCCCCccccceEEeeCCeEEEEEcCCCCChHHHHHHHhCCCCCCCcEEEEc-C-----------
Q 037346 356 TAIEIIDGSFSWDF--SSPNPTLRNINLKVFHGMRVAVCGTVGSGKSSCLSCILGGVPKESGIIRLC-G----------- 421 (1156)
Q Consensus 356 ~~i~~~~~~f~~~~--~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKSTll~~i~g~~~~~~G~i~~~-g----------- 421 (1156)
..++++|+++.|+. .++.++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++ |
T Consensus 278 ~~l~~~~l~~~~~~~~~~~~~il~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~Gl~~p~~G~i~~~~g~~~~~~~~~~~ 357 (520)
T TIGR03269 278 PIIKVRNVSKRYISVDRGVVKAVDNVSLEVKEGEIFGIVGTSGAGKTTLSKIIAGVLEPTSGEVNVRVGDEWVDMTKPGP 357 (520)
T ss_pred ceEEEeccEEEeccCCCCCceEEeeEEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEEecCCccccccccch
Confidence 36999999999952 123469999999999999999999999999999999999999999999984 3
Q ss_pred --------eEEEEecCCcCCC-ccHHHHhhcCC--CCC----HHHHHHHHHHhCCchhhhhCCCCCccccccCCCCCCHH
Q 037346 422 --------TKAYVAQSPWIQS-GKIEENILFGK--EMD----RERYERVLEACSLKKDLEVLPFGDQTIIGERGINLSGG 486 (1156)
Q Consensus 422 --------~~~~v~Q~~~~~~-~ti~eni~~~~--~~~----~~~~~~~~~~~~l~~~~~~~~~g~~t~v~~~g~~LSgG 486 (1156)
+++|++|++.++. .|++||+.++. ... +++..++++.+++.... .+........+||||
T Consensus 358 ~~~~~~~~~i~~v~q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~------~~~~~~~~~~~LSgG 431 (520)
T TIGR03269 358 DGRGRAKRYIGILHQEYDLYPHRTVLDNLTEAIGLELPDELARMKAVITLKMVGFDEEK------AEEILDKYPDELSEG 431 (520)
T ss_pred hhHHHHhhhEEEEccCcccCCCCcHHHHHHHHHHcCCCHHHHHHHHHHHHHhCCCCCcc------chhhhhCChhhCCHH
Confidence 2799999987765 59999997632 111 23445566777664310 000123456789999
Q ss_pred HHHHHHHHHhhccCCCeeeeeCCCCCcCHHHHHHHHHHHHh---cCCCEEEEEccCCCccc-cCCEEEEEeCCeEEEccC
Q 037346 487 QKQRIQIARPLYQDADIFLLDDPFSPVDDHTGAHLFKFCWV---SSSKTVIYATHQVEFLP-AADLILVIKDGKITQAGK 562 (1156)
Q Consensus 487 qkqRi~lAral~~~~~illlDep~s~lD~~~~~~i~~~~~~---~~~~tvi~vtH~~~~~~-~~d~i~~l~~G~i~~~g~ 562 (1156)
||||++|||||+.+|++|||||||++||+.+.+.+.+.+.. ..|.|+|+|||+++.+. .||+|++|++|++++.|+
T Consensus 432 q~qrv~laral~~~p~lLllDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvi~vsHd~~~~~~~~d~i~~l~~G~i~~~g~ 511 (520)
T TIGR03269 432 ERHRVALAQVLIKEPRIVILDEPTGTMDPITKVDVTHSILKAREEMEQTFIIVSHDMDFVLDVCDRAALMRDGKIVKIGD 511 (520)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHcCcEEEEEeCCHHHHHHhCCEEEEEECCEEEEECC
Confidence 99999999999999999999999999999999998876643 24789999999999886 599999999999999998
Q ss_pred hHHHHh
Q 037346 563 YSDILN 568 (1156)
Q Consensus 563 ~~~l~~ 568 (1156)
++++.+
T Consensus 512 ~~~~~~ 517 (520)
T TIGR03269 512 PEEIVE 517 (520)
T ss_pred HHHHHh
Confidence 887653
|
The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2. |
| >cd03237 ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 of RNase L inhibitor | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-33 Score=309.06 Aligned_cols=190 Identities=22% Similarity=0.275 Sum_probs=154.7
Q ss_pred EEeCCCCCCCccccceEEee-----CCeEEEEEcCCCCChHHHHHHHhCCCCCCCcEEEEcC-eEEEEecCCcC-CCccH
Q 037346 365 FSWDFSSPNPTLRNINLKVF-----HGMRVAVCGTVGSGKSSCLSCILGGVPKESGIIRLCG-TKAYVAQSPWI-QSGKI 437 (1156)
Q Consensus 365 f~~~~~~~~~~l~~i~l~i~-----~g~~~~ivG~~GsGKSTll~~i~g~~~~~~G~i~~~g-~~~~v~Q~~~~-~~~ti 437 (1156)
|+|+. ....++|++|+++ +||+++|+||||||||||+++|+|+++|++|+|.++| .++|++|++.. ++.|+
T Consensus 1 ~~y~~--~~~~~~~~~l~~~~~~i~~Ge~~~i~G~NGsGKSTLlk~L~G~~~p~~G~i~~~g~~i~~~~q~~~~~~~~tv 78 (246)
T cd03237 1 YTYPT--MKKTLGEFTLEVEGGSISESEVIGILGPNGIGKTTFIKMLAGVLKPDEGDIEIELDTVSYKPQYIKADYEGTV 78 (246)
T ss_pred CCCcc--cccccCcEEEEEecCCcCCCCEEEEECCCCCCHHHHHHHHhCCCcCCCCeEEECCceEEEecccccCCCCCCH
Confidence 56763 3457888888886 6899999999999999999999999999999999999 89999999874 67899
Q ss_pred HHHhhcCCC-C--CHHHHHHHHHHhCCchhhhhCCCCCccccccCCCCCCHHHHHHHHHHHhhccCCCeeeeeCCCCCcC
Q 037346 438 EENILFGKE-M--DRERYERVLEACSLKKDLEVLPFGDQTIIGERGINLSGGQKQRIQIARPLYQDADIFLLDDPFSPVD 514 (1156)
Q Consensus 438 ~eni~~~~~-~--~~~~~~~~~~~~~l~~~~~~~~~g~~t~v~~~g~~LSgGqkqRi~lAral~~~~~illlDep~s~lD 514 (1156)
+||+.+... . ...+..++++.+++.+.+ .....+||||||||++|||||+.+|+++||||||++||
T Consensus 79 ~e~l~~~~~~~~~~~~~~~~~l~~l~l~~~~-----------~~~~~~LSgGe~qrv~iaraL~~~p~llllDEPt~~LD 147 (246)
T cd03237 79 RDLLSSITKDFYTHPYFKTEIAKPLQIEQIL-----------DREVPELSGGELQRVAIAACLSKDADIYLLDEPSAYLD 147 (246)
T ss_pred HHHHHHHhhhccccHHHHHHHHHHcCCHHHh-----------hCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCC
Confidence 999975422 1 123456677777775433 34557899999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHh---cCCCEEEEEccCCCccc-cCCEEEEEeCCeEE--EccChHHHH
Q 037346 515 DHTGAHLFKFCWV---SSSKTVIYATHQVEFLP-AADLILVIKDGKIT--QAGKYSDIL 567 (1156)
Q Consensus 515 ~~~~~~i~~~~~~---~~~~tvi~vtH~~~~~~-~~d~i~~l~~G~i~--~~g~~~~l~ 567 (1156)
+.++..+.+.+.. ..++|+|+|||+++.+. .||+|++|+++..+ ..+++.++.
T Consensus 148 ~~~~~~l~~~l~~~~~~~~~tiiivsHd~~~~~~~~d~i~~l~~~~~~~~~~~~~~~~~ 206 (246)
T cd03237 148 VEQRLMASKVIRRFAENNEKTAFVVEHDIIMIDYLADRLIVFEGEPSVNGVANPPQSLR 206 (246)
T ss_pred HHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEcCCCeeEEEeCCchHHH
Confidence 9999988776543 24799999999999987 59999999765433 445565544
|
The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology. |
| >TIGR02314 ABC_MetN D-methionine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.1e-34 Score=323.02 Aligned_cols=201 Identities=22% Similarity=0.362 Sum_probs=176.3
Q ss_pred EEEEEEEEEEcCCCCceeeCCCCCCHHHHHHHHhhcccCCCceEEEcCeeCCCCChHH---HhhcCeeecccccccc-cc
Q 037346 948 VNIRHLQVRYAPNLPLVLRGRTGSGKSTLIQTLFRIVESTAGHILIDGKDISLIGLHD---LRTRLSIIPQDPTMFE-GT 1023 (1156)
Q Consensus 948 I~~~~Vsf~Y~~~~~~vL~G~SGsGKSTL~~lL~rl~~p~~G~I~idG~di~~i~~~~---LR~~i~~VpQdp~LF~-gT 1023 (1156)
..++||||..++++.++|.|+||||||||+++|.|+++|++|+|.+||.++.+++..+ +|++|++|||++.+|. .|
T Consensus 19 ~~L~~vsl~i~~Gei~gIiG~sGaGKSTLlr~I~gl~~p~~G~I~i~G~~i~~~~~~~l~~~r~~Ig~v~Q~~~l~~~~t 98 (343)
T TIGR02314 19 QALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTSGSVIVDGQDLTTLSNSELTKARRQIGMIFQHFNLLSSRT 98 (343)
T ss_pred EEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHHHHhcCEEEEECCccccccCc
Confidence 5799999999999989999999999999999999999999999999999999987655 5789999999999995 79
Q ss_pred chhccCCCC---CCC----HHHHHHHHHHcCCChHHHhhcCCcccc-------ccccccCCCEEEEecCCcCCCHHHHHH
Q 037346 1024 TRSNLDPLE---EHA----DEQIWEALDKCQLGDEVRKKKGKLDSQ-------GRVLLKKSKVLVLDEATASVDTATDNQ 1089 (1156)
Q Consensus 1024 Ir~Nl~~~~---~~~----deei~~al~~~~l~~~i~~lp~gl~s~-------ARALLr~~~ILiLDEaTS~LD~~te~~ 1089 (1156)
+++|+.+.. ..+ ++++.++++.+|+.+.....|..|..+ ||||+.+|+|||||||||+||+++...
T Consensus 99 v~eni~~~~~~~~~~~~~~~~~v~e~l~~vgL~~~~~~~~~~LSgGqkQRV~IARAL~~~P~iLLlDEPts~LD~~t~~~ 178 (343)
T TIGR02314 99 VFGNVALPLELDNTPKDEIKRKVTELLALVGLGDKHDSYPSNLSGGQKQRVAIARALASNPKVLLCDEATSALDPATTQS 178 (343)
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHH
Confidence 999996421 122 345789999999999888888877765 899999999999999999999999999
Q ss_pred HHHHHHHhcC--CceEEEeecCcccccc-cCEEEEEeCcEEeeecChhHHhcCCCChH-HHHH
Q 037346 1090 IQQTLRQHFS--DCTVVTIAHRITSVLD-SAMVLLLNHGLIKEYDSPTKLLENKSSSF-AQLV 1148 (1156)
Q Consensus 1090 I~~~l~~~~~--~~TvI~IaHrl~ti~~-~D~I~Vl~~G~IvE~G~~~eLl~~~~g~f-~~l~ 1148 (1156)
|.+.|++..+ +.|+|+|||+++.+.. ||+|+||++|+|+|.|++++++.++...+ +.++
T Consensus 179 i~~lL~~l~~~~g~tiiliTH~~~~v~~~~d~v~vl~~G~iv~~g~~~~v~~~p~~~~~~~~~ 241 (343)
T TIGR02314 179 ILELLKEINRRLGLTILLITHEMDVVKRICDCVAVISNGELIEQGTVSEIFSHPKTPLAQKFI 241 (343)
T ss_pred HHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHcCCCcHHHHHHH
Confidence 9999998753 7899999999999865 99999999999999999999987654433 3443
|
Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria. |
| >PRK13541 cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-33 Score=298.04 Aligned_cols=178 Identities=21% Similarity=0.286 Sum_probs=150.8
Q ss_pred EEEeeeEEEeCCCCCCCccccceEEeeCCeEEEEEcCCCCChHHHHHHHhCCCCCCCcEEEEcCe---------EEEEec
Q 037346 358 IEIIDGSFSWDFSSPNPTLRNINLKVFHGMRVAVCGTVGSGKSSCLSCILGGVPKESGIIRLCGT---------KAYVAQ 428 (1156)
Q Consensus 358 i~~~~~~f~~~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKSTll~~i~g~~~~~~G~i~~~g~---------~~~v~Q 428 (1156)
++++|++++|+ ++.++ ++||+|++||+++|+|+||||||||+++|+|+++|++|+|.++|. ++|++|
T Consensus 2 l~~~~l~~~~~---~~~l~-~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~~~~ 77 (195)
T PRK13541 2 LSLHQLQFNIE---QKNLF-DLSITFLPSAITYIKGANGCGKSSLLRMIAGIMQPSSGNIYYKNCNINNIAKPYCTYIGH 77 (195)
T ss_pred eEEEEeeEEEC---CcEEE-EEEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCcccChhhhhhEEeccC
Confidence 68999999995 23455 599999999999999999999999999999999999999999983 689999
Q ss_pred CCcC-CCccHHHHhhcCCCC--CHHHHHHHHHHhCCchhhhhCCCCCccccccCCCCCCHHHHHHHHHHHhhccCCCeee
Q 037346 429 SPWI-QSGKIEENILFGKEM--DRERYERVLEACSLKKDLEVLPFGDQTIIGERGINLSGGQKQRIQIARPLYQDADIFL 505 (1156)
Q Consensus 429 ~~~~-~~~ti~eni~~~~~~--~~~~~~~~~~~~~l~~~~~~~~~g~~t~v~~~g~~LSgGqkqRi~lAral~~~~~ill 505 (1156)
++.+ ++.|++||+.++... ..++..++++.+++.+.. .+.+.+||||||||++||||++++|+++|
T Consensus 78 ~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~l~~~~l~~~~-----------~~~~~~LS~G~~~rl~la~al~~~p~~ll 146 (195)
T PRK13541 78 NLGLKLEMTVFENLKFWSEIYNSAETLYAAIHYFKLHDLL-----------DEKCYSLSSGMQKIVAIARLIACQSDLWL 146 (195)
T ss_pred CcCCCccCCHHHHHHHHHHhcccHHHHHHHHHHcCCHhhh-----------ccChhhCCHHHHHHHHHHHHHhcCCCEEE
Confidence 8755 567999999875432 344566677777775433 34567899999999999999999999999
Q ss_pred eeCCCCCcCHHHHHHHHHHHHh--cCCCEEEEEccCCCccccCCEEE
Q 037346 506 LDDPFSPVDDHTGAHLFKFCWV--SSSKTVIYATHQVEFLPAADLIL 550 (1156)
Q Consensus 506 lDep~s~lD~~~~~~i~~~~~~--~~~~tvi~vtH~~~~~~~~d~i~ 550 (1156)
|||||++||+.+.+.+.+.+.. .+++|+|++||+++.++.||.+.
T Consensus 147 lDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~i~~~~~~~ 193 (195)
T PRK13541 147 LDEVETNLSKENRDLLNNLIVMKANSGGIVLLSSHLESSIKSAQILQ 193 (195)
T ss_pred EeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCccccchhheec
Confidence 9999999999999888776532 46899999999999999998763
|
|
| >TIGR02324 CP_lyasePhnL phosphonate C-P lyase system protein PhnL | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-33 Score=306.72 Aligned_cols=185 Identities=27% Similarity=0.345 Sum_probs=151.9
Q ss_pred EEEeeeEEEeCCC---C-CCCccccceEEeeCCeEEEEEcCCCCChHHHHHHHhCCCCCCCcEEEEc--C----------
Q 037346 358 IEIIDGSFSWDFS---S-PNPTLRNINLKVFHGMRVAVCGTVGSGKSSCLSCILGGVPKESGIIRLC--G---------- 421 (1156)
Q Consensus 358 i~~~~~~f~~~~~---~-~~~~l~~i~l~i~~g~~~~ivG~~GsGKSTll~~i~g~~~~~~G~i~~~--g---------- 421 (1156)
++++|++++|+.. + ..++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++ |
T Consensus 2 l~~~~l~~~~~~~~~~~~~~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~~~~~g~~~~~~~~~~ 81 (224)
T TIGR02324 2 LEVEDLSKTFTLHQQGGVRLPVLKNVSLTVNAGECVALSGPSGAGKSTLLKSLYANYLPDSGRILVRHEGAWVDLAQASP 81 (224)
T ss_pred EEEEeeEEEeecccCCCcceEEEecceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEEecCCCccchhhcCH
Confidence 6899999999631 1 2469999999999999999999999999999999999999999999996 3
Q ss_pred ---------eEEEEecCCcCCC-ccHHHHhhcCC---CCC----HHHHHHHHHHhCCchhhhhCCCCCccccccCCCCCC
Q 037346 422 ---------TKAYVAQSPWIQS-GKIEENILFGK---EMD----RERYERVLEACSLKKDLEVLPFGDQTIIGERGINLS 484 (1156)
Q Consensus 422 ---------~~~~v~Q~~~~~~-~ti~eni~~~~---~~~----~~~~~~~~~~~~l~~~~~~~~~g~~t~v~~~g~~LS 484 (1156)
.++|++|+|.++. .|++||+.++. ..+ .++..++++..++.+... ...+.+||
T Consensus 82 ~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~----------~~~~~~LS 151 (224)
T TIGR02324 82 REVLEVRRKTIGYVSQFLRVIPRVSALEVVAEPLLERGVPREAARARARELLARLNIPERLW----------HLPPATFS 151 (224)
T ss_pred HHHHHHHhcceEEEecccccCCCccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhh----------hCCcccCC
Confidence 2689999998765 59999997631 122 234455566666643221 23467899
Q ss_pred HHHHHHHHHHHhhccCCCeeeeeCCCCCcCHHHHHHHHHHHHh--cCCCEEEEEccCCCccc-cCCEEEEE
Q 037346 485 GGQKQRIQIARPLYQDADIFLLDDPFSPVDDHTGAHLFKFCWV--SSSKTVIYATHQVEFLP-AADLILVI 552 (1156)
Q Consensus 485 gGqkqRi~lAral~~~~~illlDep~s~lD~~~~~~i~~~~~~--~~~~tvi~vtH~~~~~~-~~d~i~~l 552 (1156)
||||||++|||||+.+|+++||||||++||+.+++.+.+.+.. .+|+|+|++||+++.+. .||+++.+
T Consensus 152 ~G~~qrl~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vsH~~~~~~~~~d~i~~~ 222 (224)
T TIGR02324 152 GGEQQRVNIARGFIADYPILLLDEPTASLDAANRQVVVELIAEAKARGAALIGIFHDEEVRELVADRVMDV 222 (224)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcceeEec
Confidence 9999999999999999999999999999999999998876644 35889999999999885 69999876
|
Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se. |
| >PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-33 Score=344.82 Aligned_cols=201 Identities=21% Similarity=0.369 Sum_probs=167.7
Q ss_pred ccEEEeeeEEEeCCC--------CCCCccccceEEeeCCeEEEEEcCCCCChHHHHHHHhCCCCCCCcEEEEcC------
Q 037346 356 TAIEIIDGSFSWDFS--------SPNPTLRNINLKVFHGMRVAVCGTVGSGKSSCLSCILGGVPKESGIIRLCG------ 421 (1156)
Q Consensus 356 ~~i~~~~~~f~~~~~--------~~~~~l~~i~l~i~~g~~~~ivG~~GsGKSTll~~i~g~~~~~~G~i~~~g------ 421 (1156)
..++++|+++.|+.. +++++|+|+||+|++|++++|+||||||||||+++|+|+++ ++|+|.++|
T Consensus 274 ~~l~~~~l~~~~~~~~~~~~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLlk~l~Gl~~-~~G~i~~~g~~i~~~ 352 (529)
T PRK15134 274 PLLDVEQLQVAFPIRKGILKRTVDHNVVVKNISFTLRPGETLGLVGESGSGKSTTGLALLRLIN-SQGEIWFDGQPLHNL 352 (529)
T ss_pred CcccccCcEEEeecCccccccccccceeeecceeEEcCCCEEEEECCCCCCHHHHHHHHhCcCC-CCcEEEECCEEcccc
Confidence 358999999999521 13579999999999999999999999999999999999985 899999987
Q ss_pred ----------eEEEEecCCc--CC-CccHHHHhhcCCC-----CC----HHHHHHHHHHhCCch-hhhhCCCCCcccccc
Q 037346 422 ----------TKAYVAQSPW--IQ-SGKIEENILFGKE-----MD----RERYERVLEACSLKK-DLEVLPFGDQTIIGE 478 (1156)
Q Consensus 422 ----------~~~~v~Q~~~--~~-~~ti~eni~~~~~-----~~----~~~~~~~~~~~~l~~-~~~~~~~g~~t~v~~ 478 (1156)
.++|++|+|. ++ +.|++||+.++.. .+ +++..++++.+++.. ..+ .
T Consensus 353 ~~~~~~~~~~~i~~v~q~~~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-----------~ 421 (529)
T PRK15134 353 NRRQLLPVRHRIQVVFQDPNSSLNPRLNVLQIIEEGLRVHQPTLSAAQREQQVIAVMEEVGLDPETRH-----------R 421 (529)
T ss_pred chhhHHHhhhceEEEEeCchhhcCCcccHHHHHHHHHHhccccCChHHHHHHHHHHHHHcCCCHHHHh-----------c
Confidence 2699999983 54 4599999987421 11 234556677777753 222 3
Q ss_pred CCCCCCHHHHHHHHHHHhhccCCCeeeeeCCCCCcCHHHHHHHHHHHHh--c-CCCEEEEEccCCCccc-cCCEEEEEeC
Q 037346 479 RGINLSGGQKQRIQIARPLYQDADIFLLDDPFSPVDDHTGAHLFKFCWV--S-SSKTVIYATHQVEFLP-AADLILVIKD 554 (1156)
Q Consensus 479 ~g~~LSgGqkqRi~lAral~~~~~illlDep~s~lD~~~~~~i~~~~~~--~-~~~tvi~vtH~~~~~~-~~d~i~~l~~ 554 (1156)
...+|||||||||+||||++.+|+++||||||++||+.+++.+++.+.. . .|+|+|+|||+++.+. .||+|++|++
T Consensus 422 ~~~~LSgG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~vsHd~~~~~~~~d~i~~l~~ 501 (529)
T PRK15134 422 YPAEFSGGQRQRIAIARALILKPSLIILDEPTSSLDKTVQAQILALLKSLQQKHQLAYLFISHDLHVVRALCHQVIVLRQ 501 (529)
T ss_pred CCccCCHHHHHHHHHHHHHhCCCCEEEeeCCccccCHHHHHHHHHHHHHHHHhhCCEEEEEeCCHHHHHHhcCeEEEEEC
Confidence 4568999999999999999999999999999999999999999886643 2 4789999999999876 5999999999
Q ss_pred CeEEEccChHHHHh
Q 037346 555 GKITQAGKYSDILN 568 (1156)
Q Consensus 555 G~i~~~g~~~~l~~ 568 (1156)
|++++.|+.+++.+
T Consensus 502 G~i~~~~~~~~~~~ 515 (529)
T PRK15134 502 GEVVEQGDCERVFA 515 (529)
T ss_pred CEEEEEcCHHHHhc
Confidence 99999999988865
|
|
| >PRK15064 ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-33 Score=341.27 Aligned_cols=200 Identities=24% Similarity=0.357 Sum_probs=170.0
Q ss_pred ccEEEeeeEEEeCCCCCCCccccceEEeeCCeEEEEEcCCCCChHHHHHHHhCCCCCCCcEEEEcC--eEEEEecCCc--
Q 037346 356 TAIEIIDGSFSWDFSSPNPTLRNINLKVFHGMRVAVCGTVGSGKSSCLSCILGGVPKESGIIRLCG--TKAYVAQSPW-- 431 (1156)
Q Consensus 356 ~~i~~~~~~f~~~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKSTll~~i~g~~~~~~G~i~~~g--~~~~v~Q~~~-- 431 (1156)
..++++|++++|+ ++++|+|+||+|++|++++|+||||||||||+++|+|+++|++|+|.++| .++|++|++.
T Consensus 318 ~~l~~~~l~~~~~---~~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~p~~G~i~~~~~~~i~~~~q~~~~~ 394 (530)
T PRK15064 318 NALEVENLTKGFD---NGPLFKNLNLLLEAGERLAIIGENGVGKTTLLRTLVGELEPDSGTVKWSENANIGYYAQDHAYD 394 (530)
T ss_pred ceEEEEeeEEeeC---CceeecCcEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCceEEEEEccccccc
Confidence 4699999999996 35699999999999999999999999999999999999999999999987 6899999974
Q ss_pred CC-CccHHHHhhcCC--CCCHHHHHHHHHHhCCchhhhhCCCCCccccccCCCCCCHHHHHHHHHHHhhccCCCeeeeeC
Q 037346 432 IQ-SGKIEENILFGK--EMDRERYERVLEACSLKKDLEVLPFGDQTIIGERGINLSGGQKQRIQIARPLYQDADIFLLDD 508 (1156)
Q Consensus 432 ~~-~~ti~eni~~~~--~~~~~~~~~~~~~~~l~~~~~~~~~g~~t~v~~~g~~LSgGqkqRi~lAral~~~~~illlDe 508 (1156)
++ ..|++||+.+.. ..++++.+++++.+++..+. ......+||||||||++||||++.+|+++||||
T Consensus 395 ~~~~~t~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~----------~~~~~~~LSgGq~qrv~la~al~~~p~lllLDE 464 (530)
T PRK15064 395 FENDLTLFDWMSQWRQEGDDEQAVRGTLGRLLFSQDD----------IKKSVKVLSGGEKGRMLFGKLMMQKPNVLVMDE 464 (530)
T ss_pred CCCCCcHHHHHHHhccCCccHHHHHHHHHHcCCChhH----------hcCcccccCHHHHHHHHHHHHHhcCCCEEEEcC
Confidence 33 369999986521 22345667788887774221 124557899999999999999999999999999
Q ss_pred CCCCcCHHHHHHHHHHHHhcCCCEEEEEccCCCccc-cCCEEEEEeCCeEE-EccChHHHHhc
Q 037346 509 PFSPVDDHTGAHLFKFCWVSSSKTVIYATHQVEFLP-AADLILVIKDGKIT-QAGKYSDILNS 569 (1156)
Q Consensus 509 p~s~lD~~~~~~i~~~~~~~~~~tvi~vtH~~~~~~-~~d~i~~l~~G~i~-~~g~~~~l~~~ 569 (1156)
||++||+.+.+.+.+.+... +.|+|+|||+++++. .||+|++|++|+++ +.|+++++.+.
T Consensus 465 Pt~~LD~~~~~~l~~~l~~~-~~tvi~vsHd~~~~~~~~d~i~~l~~g~i~~~~g~~~~~~~~ 526 (530)
T PRK15064 465 PTNHMDMESIESLNMALEKY-EGTLIFVSHDREFVSSLATRIIEITPDGVVDFSGTYEEYLRS 526 (530)
T ss_pred CCCCCCHHHHHHHHHHHHHC-CCEEEEEeCCHHHHHHhCCEEEEEECCeEEEcCCCHHHHHHH
Confidence 99999999999988766544 459999999999986 49999999999998 88998887643
|
|
| >TIGR03771 anch_rpt_ABC anchored repeat-type ABC transporter, ATP-binding subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-33 Score=304.74 Aligned_cols=176 Identities=24% Similarity=0.420 Sum_probs=149.2
Q ss_pred EEeeCCeEEEEEcCCCCChHHHHHHHhCCCCCCCcEEEEcCe--------EEEEecCCcC---CCccHHHHhhcCCC---
Q 037346 381 LKVFHGMRVAVCGTVGSGKSSCLSCILGGVPKESGIIRLCGT--------KAYVAQSPWI---QSGKIEENILFGKE--- 446 (1156)
Q Consensus 381 l~i~~g~~~~ivG~~GsGKSTll~~i~g~~~~~~G~i~~~g~--------~~~v~Q~~~~---~~~ti~eni~~~~~--- 446 (1156)
|+|++||+++|+|+||||||||+++|+|.++|++|+|.++|. ++|++|+|.+ ++.|+.||+.++..
T Consensus 1 l~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~i~~v~q~~~~~~~~~~tv~~~l~~~~~~~~ 80 (223)
T TIGR03771 1 LSADKGELLGLLGPNGAGKTTLLRAILGLIPPAKGTVKVAGASPGKGWRHIGYVPQRHEFAWDFPISVAHTVMSGRTGHI 80 (223)
T ss_pred CccCCCcEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCccchHhhCcEEEecccccccCCCCccHHHHHHhcccccc
Confidence 578999999999999999999999999999999999999984 8999999865 35799999987521
Q ss_pred --------CCHHHHHHHHHHhCCchhhhhCCCCCccccccCCCCCCHHHHHHHHHHHhhccCCCeeeeeCCCCCcCHHHH
Q 037346 447 --------MDRERYERVLEACSLKKDLEVLPFGDQTIIGERGINLSGGQKQRIQIARPLYQDADIFLLDDPFSPVDDHTG 518 (1156)
Q Consensus 447 --------~~~~~~~~~~~~~~l~~~~~~~~~g~~t~v~~~g~~LSgGqkqRi~lAral~~~~~illlDep~s~lD~~~~ 518 (1156)
.++++..++++.+++.+.. .....+||||||||++||||++.+|+++||||||++||+.++
T Consensus 81 ~~~~~~~~~~~~~~~~~l~~~~l~~~~-----------~~~~~~LS~G~~qrv~laral~~~p~llilDEP~~~LD~~~~ 149 (223)
T TIGR03771 81 GWLRRPCVADFAAVRDALRRVGLTELA-----------DRPVGELSGGQRQRVLVARALATRPSVLLLDEPFTGLDMPTQ 149 (223)
T ss_pred ccccCCcHHHHHHHHHHHHHhCCchhh-----------cCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHH
Confidence 1123455667777775433 234567999999999999999999999999999999999999
Q ss_pred HHHHHHHHh--cCCCEEEEEccCCCccc-cCCEEEEEeCCeEEEccChHHHHh
Q 037346 519 AHLFKFCWV--SSSKTVIYATHQVEFLP-AADLILVIKDGKITQAGKYSDILN 568 (1156)
Q Consensus 519 ~~i~~~~~~--~~~~tvi~vtH~~~~~~-~~d~i~~l~~G~i~~~g~~~~l~~ 568 (1156)
+.+.+.+.. .+|+|+|++||+++.+. .||+++++ +|++++.|+++++.+
T Consensus 150 ~~l~~~l~~~~~~~~tvii~sH~~~~~~~~~d~i~~l-~G~i~~~~~~~~~~~ 201 (223)
T TIGR03771 150 ELLTELFIELAGAGTAILMTTHDLAQAMATCDRVVLL-NGRVIADGTPQQLQD 201 (223)
T ss_pred HHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEE-CCEEEeecCHHHhcC
Confidence 998887644 35889999999999875 59999999 799999999988765
|
This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown. |
| >TIGR01189 ccmA heme ABC exporter, ATP-binding protein CcmA | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-33 Score=297.93 Aligned_cols=178 Identities=24% Similarity=0.286 Sum_probs=148.4
Q ss_pred EEEeeeEEEeCCCCCCCccccceEEeeCCeEEEEEcCCCCChHHHHHHHhCCCCCCCcEEEEcCe------------EEE
Q 037346 358 IEIIDGSFSWDFSSPNPTLRNINLKVFHGMRVAVCGTVGSGKSSCLSCILGGVPKESGIIRLCGT------------KAY 425 (1156)
Q Consensus 358 i~~~~~~f~~~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKSTll~~i~g~~~~~~G~i~~~g~------------~~~ 425 (1156)
++++|+++.|+ ++++|+|+||+|++|++++|+||||||||||+++|+|+++|++|+|.++|. ++|
T Consensus 1 l~~~~l~~~~~---~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~i~~ 77 (198)
T TIGR01189 1 LAARNLACSRG---ERMLFEGLSFTLNAGEALQVTGPNGIGKTTLLRILAGLLRPDSGEVRWNGTALAEQRDEPHRNILY 77 (198)
T ss_pred CEEEEEEEEEC---CEEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCEEcccchHHhhhheEE
Confidence 46899999996 357999999999999999999999999999999999999999999999883 589
Q ss_pred EecCCcCCC-ccHHHHhhcCCC---CCHHHHHHHHHHhCCchhhhhCCCCCccccccCCCCCCHHHHHHHHHHHhhccCC
Q 037346 426 VAQSPWIQS-GKIEENILFGKE---MDRERYERVLEACSLKKDLEVLPFGDQTIIGERGINLSGGQKQRIQIARPLYQDA 501 (1156)
Q Consensus 426 v~Q~~~~~~-~ti~eni~~~~~---~~~~~~~~~~~~~~l~~~~~~~~~g~~t~v~~~g~~LSgGqkqRi~lAral~~~~ 501 (1156)
++|++.++. .|++||+.+... .++++..++++.+++.+.++ ....+||||||||++||||++.+|
T Consensus 78 ~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~-----------~~~~~LS~G~~qrv~la~al~~~p 146 (198)
T TIGR01189 78 LGHLPGLKPELSALENLHFWAAIHGGAQRTIEDALAAVGLTGFED-----------LPAAQLSAGQQRRLALARLWLSRA 146 (198)
T ss_pred eccCcccccCCcHHHHHHHHHHHcCCcHHHHHHHHHHcCCHHHhc-----------CChhhcCHHHHHHHHHHHHHhcCC
Confidence 999988765 699999976532 12345677777777765442 344689999999999999999999
Q ss_pred CeeeeeCCCCCcCHHHHHHHHHHHHh--cCCCEEEEEccCCCccccCCEEE
Q 037346 502 DIFLLDDPFSPVDDHTGAHLFKFCWV--SSSKTVIYATHQVEFLPAADLIL 550 (1156)
Q Consensus 502 ~illlDep~s~lD~~~~~~i~~~~~~--~~~~tvi~vtH~~~~~~~~d~i~ 550 (1156)
+++||||||++||+.+++.+.+.+.. .+|+|+|++||+...+. |++++
T Consensus 147 ~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sH~~~~~~-~~~~~ 196 (198)
T TIGR01189 147 PLWILDEPTTALDKAGVALLAGLLRAHLARGGIVLLTTHQDLGLV-EAREL 196 (198)
T ss_pred CEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEEEccccccc-ceEEe
Confidence 99999999999999999888776643 45889999999985433 35544
|
This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c. |
| >cd03244 ABCC_MRP_domain2 Domain 2 of the ABC subfamily C | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-33 Score=304.17 Aligned_cols=186 Identities=54% Similarity=0.886 Sum_probs=172.1
Q ss_pred EEEEEEEEEEcCCCCceeeCCCCCCHHHHHHHHhhcccCCCceEEEcCeeCCCCChHHHhhcCeeeccccccccccchhc
Q 037346 948 VNIRHLQVRYAPNLPLVLRGRTGSGKSTLIQTLFRIVESTAGHILIDGKDISLIGLHDLRTRLSIIPQDPTMFEGTTRSN 1027 (1156)
Q Consensus 948 I~~~~Vsf~Y~~~~~~vL~G~SGsGKSTL~~lL~rl~~p~~G~I~idG~di~~i~~~~LR~~i~~VpQdp~LF~gTIr~N 1027 (1156)
-.++|++|..++++-++|.|+||||||||+++|+|+++|++|+|.+||.++.+.+...+|++++|+||+|.+|++|+++|
T Consensus 18 ~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~l~~~tv~en 97 (221)
T cd03244 18 PVLKNISFSIKPGEKVGIVGRTGSGKSSLLLALFRLVELSSGSILIDGVDISKIGLHDLRSRISIIPQDPVLFSGTIRSN 97 (221)
T ss_pred ccccceEEEECCCCEEEEECCCCCCHHHHHHHHHcCCCCCCCEEEECCEEhHhCCHHHHhhhEEEECCCCccccchHHHH
Confidence 36889999998888889999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCCCHHHHHHHHHHcCCChHHHhhcCCcccc------------------ccccccCCCEEEEecCCcCCCHHHHHH
Q 037346 1028 LDPLEEHADEQIWEALDKCQLGDEVRKKKGKLDSQ------------------GRVLLKKSKVLVLDEATASVDTATDNQ 1089 (1156)
Q Consensus 1028 l~~~~~~~deei~~al~~~~l~~~i~~lp~gl~s~------------------ARALLr~~~ILiLDEaTS~LD~~te~~ 1089 (1156)
++++.....+++.++++.+++.+++..+|.|+++. ||||+++|++|||||||++||+.+.+.
T Consensus 98 l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~l~~~~~~~~~~LS~G~~qr~~laral~~~p~llllDEP~~~LD~~~~~~ 177 (221)
T cd03244 98 LDPFGEYSDEELWQALERVGLKEFVESLPGGLDTVVEEGGENLSVGQRQLLCLARALLRKSKILVLDEATASVDPETDAL 177 (221)
T ss_pred hCcCCCCCHHHHHHHHHHhCcHHHHHhcccccccccccCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHH
Confidence 98776667788999999999999998777666532 899999999999999999999999999
Q ss_pred HHHHHHHhcCCceEEEeecCcccccccCEEEEEeCcEEeeecCh
Q 037346 1090 IQQTLRQHFSDCTVVTIAHRITSVLDSAMVLLLNHGLIKEYDSP 1133 (1156)
Q Consensus 1090 I~~~l~~~~~~~TvI~IaHrl~ti~~~D~I~Vl~~G~IvE~G~~ 1133 (1156)
+.+.|++..++.|+|++||+++.+..||+|++|++|++++.|++
T Consensus 178 l~~~l~~~~~~~tii~~sh~~~~~~~~d~i~~l~~g~~~~~~~~ 221 (221)
T cd03244 178 IQKTIREAFKDCTVLTIAHRLDTIIDSDRILVLDKGRVVEFDSP 221 (221)
T ss_pred HHHHHHHhcCCCEEEEEeCCHHHHhhCCEEEEEECCeEEecCCC
Confidence 99999988778999999999999999999999999999998863
|
This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate. |
| >COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.5e-33 Score=300.36 Aligned_cols=205 Identities=25% Similarity=0.392 Sum_probs=172.6
Q ss_pred CccEEEeeeEEEeCCCC--------CCCccccceEEeeCCeEEEEEcCCCCChHHHHHHHhCCCCCCCcEEEEcCe----
Q 037346 355 DTAIEIIDGSFSWDFSS--------PNPTLRNINLKVFHGMRVAVCGTVGSGKSSCLSCILGGVPKESGIIRLCGT---- 422 (1156)
Q Consensus 355 ~~~i~~~~~~f~~~~~~--------~~~~l~~i~l~i~~g~~~~ivG~~GsGKSTll~~i~g~~~~~~G~i~~~g~---- 422 (1156)
...++.+|+...|+-.+ ...+.+++||++++||.++|||+||||||||-.+|++++++. |+|.++|+
T Consensus 274 ~~ll~~~~v~v~f~i~~g~~~r~~~~~~AVd~isl~L~~gqTlGlVGESGSGKsTlG~allrL~~s~-G~I~F~G~~i~~ 352 (534)
T COG4172 274 PVLLEVEDLRVWFPIKGGFLRRTVDHLRAVDGISLTLRRGQTLGLVGESGSGKSTLGLALLRLIPSQ-GEIRFDGQDIDG 352 (534)
T ss_pred CceEEecceEEEEecCCccccccchheEEeccceeEecCCCeEEEEecCCCCcchHHHHHHhhcCcC-ceEEECCccccc
Confidence 34688999998887432 235789999999999999999999999999999999999886 99999984
Q ss_pred ------------EEEEecCCcC---CCccHHHHhhcCCCC---------CHHHHHHHHHHhCCchhhhhCCCCCcccccc
Q 037346 423 ------------KAYVAQSPWI---QSGKIEENILFGKEM---------DRERYERVLEACSLKKDLEVLPFGDQTIIGE 478 (1156)
Q Consensus 423 ------------~~~v~Q~~~~---~~~ti~eni~~~~~~---------~~~~~~~~~~~~~l~~~~~~~~~g~~t~v~~ 478 (1156)
+-.|+|+|+- +..||.+-|.-|... .+++..++++.++|+.... .+
T Consensus 353 ~~~~~mrplR~~mQvVFQDPygSLsPRmtV~qII~EGL~vh~~~ls~~eR~~rv~~aL~EVGLDp~~r----------~R 422 (534)
T COG4172 353 LSRKEMRPLRRRMQVVFQDPYGSLSPRMTVGQIIEEGLRVHEPKLSAAERDQRVIEALEEVGLDPATR----------NR 422 (534)
T ss_pred cChhhhhhhhhhceEEEeCCCCCCCcccCHHHHhhhhhhhcCCCCCHHHHHHHHHHHHHHcCCChhHh----------hc
Confidence 4689999972 456999888766421 1345666777788876432 23
Q ss_pred CCCCCCHHHHHHHHHHHhhccCCCeeeeeCCCCCcCHHHHHHHHHHHHh---cCCCEEEEEccCCCcccc-CCEEEEEeC
Q 037346 479 RGINLSGGQKQRIQIARPLYQDADIFLLDDPFSPVDDHTGAHLFKFCWV---SSSKTVIYATHQVEFLPA-ADLILVIKD 554 (1156)
Q Consensus 479 ~g~~LSgGqkqRi~lAral~~~~~illlDep~s~lD~~~~~~i~~~~~~---~~~~tvi~vtH~~~~~~~-~d~i~~l~~ 554 (1156)
.+.++|||||||||||||+.-+|++++|||||||||..++.++.+.+.. ..|-+-++||||+..++. ||+|+||++
T Consensus 423 YPhEFSGGQRQRIAIARAliLkP~~i~LDEPTSALD~SVQaQvv~LLr~LQ~k~~LsYLFISHDL~VvrAl~~~viVm~~ 502 (534)
T COG4172 423 YPHEFSGGQRQRIAIARALILKPELILLDEPTSALDRSVQAQVLDLLRDLQQKHGLSYLFISHDLAVVRALCHRVIVMRD 502 (534)
T ss_pred CCcccCcchhhHHHHHHHHhcCCcEEEecCCchHhhHHHHHHHHHHHHHHHHHhCCeEEEEeccHHHHHHhhceEEEEeC
Confidence 4478999999999999999999999999999999999999999886533 557899999999999975 999999999
Q ss_pred CeEEEccChHHHHhcC
Q 037346 555 GKITQAGKYSDILNSG 570 (1156)
Q Consensus 555 G~i~~~g~~~~l~~~~ 570 (1156)
|+|+|+|+.++++++.
T Consensus 503 GkiVE~G~~~~if~~P 518 (534)
T COG4172 503 GKIVEQGPTEAVFANP 518 (534)
T ss_pred CEEeeeCCHHHHhcCC
Confidence 9999999999998754
|
|
| >cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1) | Back alignment and domain information |
|---|
Probab=100.00 E-value=4e-33 Score=299.08 Aligned_cols=185 Identities=52% Similarity=0.846 Sum_probs=158.5
Q ss_pred CCCCCeEEEEEEEEEEc---------------CCCCceeeCCCCCCHHHHHHHHhhcccCCCceEEEcCeeCCCCChHHH
Q 037346 942 RPSHGEVNIRHLQVRYA---------------PNLPLVLRGRTGSGKSTLIQTLFRIVESTAGHILIDGKDISLIGLHDL 1006 (1156)
Q Consensus 942 ~p~~g~I~~~~Vsf~Y~---------------~~~~~vL~G~SGsGKSTL~~lL~rl~~p~~G~I~idG~di~~i~~~~L 1006 (1156)
||..+.++++|++++|+ +++.++|.|+||||||||+++|+|+++|++|+|.+||.++.+.+...+
T Consensus 1 ~~~~~~l~~~~l~~~~~~~~~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~ 80 (207)
T cd03369 1 WPEHGEIEVENLSVRYAPDLPPVLKNVSFKVKAGEKIGIVGRTGAGKSTLILALFRFLEAEEGKIEIDGIDISTIPLEDL 80 (207)
T ss_pred CCCCCeEEEEEEEEEeCCCCcccccCceEEECCCCEEEEECCCCCCHHHHHHHHhcccCCCCCeEEECCEEhHHCCHHHH
Confidence 56666666666666664 344456779999999999999999999999999999999998888889
Q ss_pred hhcCeeeccccccccccchhccCCCCCCCHHHHHHHHHHcCCChHHHhhcCCcccc-------ccccccCCCEEEEecCC
Q 037346 1007 RTRLSIIPQDPTMFEGTTRSNLDPLEEHADEQIWEALDKCQLGDEVRKKKGKLDSQ-------GRVLLKKSKVLVLDEAT 1079 (1156)
Q Consensus 1007 R~~i~~VpQdp~LF~gTIr~Nl~~~~~~~deei~~al~~~~l~~~i~~lp~gl~s~-------ARALLr~~~ILiLDEaT 1079 (1156)
|+.++||||+|.+|++|+++|+.++....++++.++++ + ...+..|..+ |||++++|+||||||||
T Consensus 81 ~~~i~~v~q~~~~~~~tv~~~l~~~~~~~~~~~~~~l~---~----~~~~~~LS~G~~qrv~laral~~~p~llllDEP~ 153 (207)
T cd03369 81 RSSLTIIPQDPTLFSGTIRSNLDPFDEYSDEEIYGALR---V----SEGGLNLSQGQRQLLCLARALLKRPRVLVLDEAT 153 (207)
T ss_pred HhhEEEEecCCcccCccHHHHhcccCCCCHHHHHHHhh---c----cCCCCcCCHHHHHHHHHHHHHhhCCCEEEEeCCc
Confidence 99999999999999999999998765556667777776 2 2233334333 89999999999999999
Q ss_pred cCCCHHHHHHHHHHHHHhcCCceEEEeecCcccccccCEEEEEeCcEEeeecCh
Q 037346 1080 ASVDTATDNQIQQTLRQHFSDCTVVTIAHRITSVLDSAMVLLLNHGLIKEYDSP 1133 (1156)
Q Consensus 1080 S~LD~~te~~I~~~l~~~~~~~TvI~IaHrl~ti~~~D~I~Vl~~G~IvE~G~~ 1133 (1156)
++||+++...+.+.|++..+++|+|+|||+++.+..||+|++|++|++++.|+|
T Consensus 154 ~~LD~~~~~~l~~~l~~~~~~~tiii~th~~~~~~~~d~v~~l~~g~i~~~g~~ 207 (207)
T cd03369 154 ASIDYATDALIQKTIREEFTNSTILTIAHRLRTIIDYDKILVMDAGEVKEYDHP 207 (207)
T ss_pred ccCCHHHHHHHHHHHHHhcCCCEEEEEeCCHHHHhhCCEEEEEECCEEEecCCC
Confidence 999999999999999988778999999999999988999999999999999875
|
NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate. |
| >COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-33 Score=311.96 Aligned_cols=197 Identities=23% Similarity=0.384 Sum_probs=175.3
Q ss_pred CeE-EEEEEEEEEcCCCCceeeCCCCCCHHHHHHHHhhcccCCCceEEEcCeeCCCCChHHHhhcCeeeccccccccc-c
Q 037346 946 GEV-NIRHLQVRYAPNLPLVLRGRTGSGKSTLIQTLFRIVESTAGHILIDGKDISLIGLHDLRTRLSIIPQDPTMFEG-T 1023 (1156)
Q Consensus 946 g~I-~~~~Vsf~Y~~~~~~vL~G~SGsGKSTL~~lL~rl~~p~~G~I~idG~di~~i~~~~LR~~i~~VpQdp~LF~g-T 1023 (1156)
|.. .++|+++...+++-++|.|||||||||++++|+||.+|++|+|.|||.|++++++++ +.|++|+|+.-||.. |
T Consensus 14 g~~~~l~~i~l~i~~Gef~vllGPSGcGKSTlLr~IAGLe~~~~G~I~i~g~~vt~l~P~~--R~iamVFQ~yALyPhmt 91 (338)
T COG3839 14 GSFEVLKDVNLDIEDGEFVVLLGPSGCGKSTLLRMIAGLEEPTSGEILIDGRDVTDLPPEK--RGIAMVFQNYALYPHMT 91 (338)
T ss_pred CCceeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCChhH--CCEEEEeCCccccCCCc
Confidence 344 788888888888888999999999999999999999999999999999999999986 789999999999976 9
Q ss_pred chhccCCCCC-------CCHHHHHHHHHHcCCChHHHhhcCCcccc-------ccccccCCCEEEEecCCcCCCHHHHHH
Q 037346 1024 TRSNLDPLEE-------HADEQIWEALDKCQLGDEVRKKKGKLDSQ-------GRVLLKKSKVLVLDEATASVDTATDNQ 1089 (1156)
Q Consensus 1024 Ir~Nl~~~~~-------~~deei~~al~~~~l~~~i~~lp~gl~s~-------ARALLr~~~ILiLDEaTS~LD~~te~~ 1089 (1156)
|++||.+.=. ..++++.++++..++.+.+...|..|..+ ||||+++|++++||||.||||++....
T Consensus 92 V~~Niaf~Lk~~~~~k~ei~~rV~eva~~L~l~~lL~r~P~~LSGGQrQRVAlaRAlVr~P~v~L~DEPlSnLDa~lR~~ 171 (338)
T COG3839 92 VYENIAFGLKLRGVPKAEIDKRVKEVAKLLGLEHLLNRKPLQLSGGQRQRVALARALVRKPKVFLLDEPLSNLDAKLRVL 171 (338)
T ss_pred HHHHhhhhhhhCCCchHHHHHHHHHHHHHcCChhHHhcCcccCChhhHHHHHHHHHHhcCCCEEEecCchhHhhHHHHHH
Confidence 9999986421 22677999999999999999999988755 899999999999999999999999998
Q ss_pred HHHHHHHhcC--CceEEEeecCccc-ccccCEEEEEeCcEEeeecChhHHhcCCCChH
Q 037346 1090 IQQTLRQHFS--DCTVVTIAHRITS-VLDSAMVLLLNHGLIKEYDSPTKLLENKSSSF 1144 (1156)
Q Consensus 1090 I~~~l~~~~~--~~TvI~IaHrl~t-i~~~D~I~Vl~~G~IvE~G~~~eLl~~~~g~f 1144 (1156)
+...|+++.+ +.|+|.|||+... +.-+|||+||++|+|.+.|+|.|+..++...|
T Consensus 172 mr~ei~~lh~~l~~T~IYVTHDq~EAmtladri~Vm~~G~i~Q~g~p~ely~~P~n~f 229 (338)
T COG3839 172 MRSEIKKLHERLGTTTIYVTHDQVEAMTLADRIVVMNDGRIQQVGTPLELYERPANLF 229 (338)
T ss_pred HHHHHHHHHHhcCCcEEEEcCCHHHHHhhCCEEEEEeCCeeeecCChHHHhhCccchh
Confidence 8888877543 6799999999754 55699999999999999999999998877655
|
|
| >cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.6e-33 Score=304.74 Aligned_cols=199 Identities=29% Similarity=0.459 Sum_probs=178.4
Q ss_pred EEEEEEEEEEcCCCCceeeCCCCCCHHHHHHHHhhcccCCCceEEEcCeeCCCCChHHHhhcCeeeccccccccccchhc
Q 037346 948 VNIRHLQVRYAPNLPLVLRGRTGSGKSTLIQTLFRIVESTAGHILIDGKDISLIGLHDLRTRLSIIPQDPTMFEGTTRSN 1027 (1156)
Q Consensus 948 I~~~~Vsf~Y~~~~~~vL~G~SGsGKSTL~~lL~rl~~p~~G~I~idG~di~~i~~~~LR~~i~~VpQdp~LF~gTIr~N 1027 (1156)
-.++|++|..++++.++|.|+||||||||+++|.|+++|++|+|.+||.++.+.+...+|+.++++||++.+|..|++||
T Consensus 16 ~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~tv~en 95 (234)
T cd03251 16 PVLRDISLDIPAGETVALVGPSGSGKSTLVNLIPRFYDVDSGRILIDGHDVRDYTLASLRRQIGLVSQDVFLFNDTVAEN 95 (234)
T ss_pred cceeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhccccCCCCEEEECCEEhhhCCHHHHHhhEEEeCCCCeeccccHHHH
Confidence 36899999999999999999999999999999999999999999999999998888889999999999999999999999
Q ss_pred cCCCCC-CCHHHHHHHHHHcCCChHHHhhcCCcccc------------------ccccccCCCEEEEecCCcCCCHHHHH
Q 037346 1028 LDPLEE-HADEQIWEALDKCQLGDEVRKKKGKLDSQ------------------GRVLLKKSKVLVLDEATASVDTATDN 1088 (1156)
Q Consensus 1028 l~~~~~-~~deei~~al~~~~l~~~i~~lp~gl~s~------------------ARALLr~~~ILiLDEaTS~LD~~te~ 1088 (1156)
+.++.. ...+++.++++..++.+++..+|.++++. ||||+++|++|||||||++||+.+..
T Consensus 96 l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~lllLDEP~~~LD~~~~~ 175 (234)
T cd03251 96 IAYGRPGATREEVEEAARAANAHEFIMELPEGYDTVIGERGVKLSGGQRQRIAIARALLKDPPILILDEATSALDTESER 175 (234)
T ss_pred hhccCCCCCHHHHHHHHHHcCcHHHHHhcccCcceeeccCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHH
Confidence 987533 34567778888888888888776555421 89999999999999999999999999
Q ss_pred HHHHHHHHhcCCceEEEeecCcccccccCEEEEEeCcEEeeecChhHHhcCCCChHHHH
Q 037346 1089 QIQQTLRQHFSDCTVVTIAHRITSVLDSAMVLLLNHGLIKEYDSPTKLLENKSSSFAQL 1147 (1156)
Q Consensus 1089 ~I~~~l~~~~~~~TvI~IaHrl~ti~~~D~I~Vl~~G~IvE~G~~~eLl~~~~g~f~~l 1147 (1156)
.+.+.|++..++.|+|++||+++.+..||+|++|++|++++.|+++++..+ .+.|+.+
T Consensus 176 ~l~~~l~~~~~~~tii~~sh~~~~~~~~d~v~~l~~G~i~~~~~~~~~~~~-~~~~~~~ 233 (234)
T cd03251 176 LVQAALERLMKNRTTFVIAHRLSTIENADRIVVLEDGKIVERGTHEELLAQ-GGVYAKL 233 (234)
T ss_pred HHHHHHHHhcCCCEEEEEecCHHHHhhCCEEEEecCCeEeeeCCHHHHHHc-Ccchhhh
Confidence 999999998788999999999999999999999999999999999999865 5555543
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-33 Score=307.32 Aligned_cols=192 Identities=24% Similarity=0.366 Sum_probs=170.2
Q ss_pred EEEEEEEEEEcCCCCceeeCCCCCCHHHHHHHHhhcccCCCceEEEcCeeCCCCCh---HHHhhcCeeeccccccccc-c
Q 037346 948 VNIRHLQVRYAPNLPLVLRGRTGSGKSTLIQTLFRIVESTAGHILIDGKDISLIGL---HDLRTRLSIIPQDPTMFEG-T 1023 (1156)
Q Consensus 948 I~~~~Vsf~Y~~~~~~vL~G~SGsGKSTL~~lL~rl~~p~~G~I~idG~di~~i~~---~~LR~~i~~VpQdp~LF~g-T 1023 (1156)
-.++|+||...+++.++|.|+||||||||+++|+|+++|++|+|.+||.++...+. ..+|+.+++|||++.+|.+ |
T Consensus 14 ~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~t 93 (235)
T cd03261 14 TVLKGVDLDVRRGEILAIIGPSGSGKSTLLRLIVGLLRPDSGEVLIDGEDISGLSEAELYRLRRRMGMLFQSGALFDSLT 93 (235)
T ss_pred EEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccChhhHHHHhcceEEEccCcccCCCCc
Confidence 47999999999999999999999999999999999999999999999999988764 5678899999999999986 9
Q ss_pred chhccCCCC----CCC----HHHHHHHHHHcCCChHHHhhcCCcccc-------ccccccCCCEEEEecCCcCCCHHHHH
Q 037346 1024 TRSNLDPLE----EHA----DEQIWEALDKCQLGDEVRKKKGKLDSQ-------GRVLLKKSKVLVLDEATASVDTATDN 1088 (1156)
Q Consensus 1024 Ir~Nl~~~~----~~~----deei~~al~~~~l~~~i~~lp~gl~s~-------ARALLr~~~ILiLDEaTS~LD~~te~ 1088 (1156)
+++|+.+.. ..+ ++++.++++.+++.++....|..|..+ ||||+++|+||||||||++||+.+.+
T Consensus 94 v~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~ia~al~~~p~llllDEPt~~LD~~~~~ 173 (235)
T cd03261 94 VFENVAFPLREHTRLSEEEIREIVLEKLEAVGLRGAEDLYPAELSGGMKKRVALARALALDPELLLYDEPTAGLDPIASG 173 (235)
T ss_pred HHHHHHHHHhhccCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEecCCcccCCHHHHH
Confidence 999996431 122 345788999999988887777766655 89999999999999999999999999
Q ss_pred HHHHHHHHhcC--CceEEEeecCcccccc-cCEEEEEeCcEEeeecChhHHhcC
Q 037346 1089 QIQQTLRQHFS--DCTVVTIAHRITSVLD-SAMVLLLNHGLIKEYDSPTKLLEN 1139 (1156)
Q Consensus 1089 ~I~~~l~~~~~--~~TvI~IaHrl~ti~~-~D~I~Vl~~G~IvE~G~~~eLl~~ 1139 (1156)
.+.+.|++..+ ++|||+|||+++.+.. ||+|++|++|++++.|+++++...
T Consensus 174 ~l~~~l~~~~~~~~~tvi~vsH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~ 227 (235)
T cd03261 174 VIDDLIRSLKKELGLTSIMVTHDLDTAFAIADRIAVLYDGKIVAEGTPEELRAS 227 (235)
T ss_pred HHHHHHHHHHHhcCcEEEEEecCHHHHHHhcCEEEEEECCeEEEecCHHHHcCC
Confidence 99999998753 7899999999998865 999999999999999999998854
|
The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >TIGR01166 cbiO cobalt transport protein ATP-binding subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-33 Score=295.86 Aligned_cols=160 Identities=26% Similarity=0.416 Sum_probs=135.3
Q ss_pred CCCccccceEEeeCCeEEEEEcCCCCChHHHHHHHhCCCCCCCcEEEEcCe---------------EEEEecCC--cCCC
Q 037346 372 PNPTLRNINLKVFHGMRVAVCGTVGSGKSSCLSCILGGVPKESGIIRLCGT---------------KAYVAQSP--WIQS 434 (1156)
Q Consensus 372 ~~~~l~~i~l~i~~g~~~~ivG~~GsGKSTll~~i~g~~~~~~G~i~~~g~---------------~~~v~Q~~--~~~~ 434 (1156)
++.+|+|+||+|++||+++|+||||||||||+++|+|.++|++|+|.++|. ++|++|+| .++.
T Consensus 4 ~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~ 83 (190)
T TIGR01166 4 GPEVLKGLNFAAERGEVLALLGANGAGKSTLLLHLNGLLRPQSGAVLIDGEPLDYSRKGLLERRQRVGLVFQDPDDQLFA 83 (190)
T ss_pred ccceecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceeEEECCEEccccccchHHHHhhEEEEecChhhcccc
Confidence 457999999999999999999999999999999999999999999999872 68999998 4677
Q ss_pred ccHHHHhhcCC---CCCH----HHHHHHHHHhCCchhhhhCCCCCccccccCCCCCCHHHHHHHHHHHhhccCCCeeeee
Q 037346 435 GKIEENILFGK---EMDR----ERYERVLEACSLKKDLEVLPFGDQTIIGERGINLSGGQKQRIQIARPLYQDADIFLLD 507 (1156)
Q Consensus 435 ~ti~eni~~~~---~~~~----~~~~~~~~~~~l~~~~~~~~~g~~t~v~~~g~~LSgGqkqRi~lAral~~~~~illlD 507 (1156)
.|++||+.++. ..+. ++.+++++.+++.+..+ +...+||||||||++|||||+.+|+++|||
T Consensus 84 ~tv~~nl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-----------~~~~~LS~G~~qrv~laral~~~p~llllD 152 (190)
T TIGR01166 84 ADVDQDVAFGPLNLGLSEAEVERRVREALTAVGASGLRE-----------RPTHCLSGGEKKRVAIAGAVAMRPDVLLLD 152 (190)
T ss_pred ccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCchhhhh-----------CChhhCCHHHHHHHHHHHHHhcCCCEEEEc
Confidence 89999998752 1222 34556667777754433 345689999999999999999999999999
Q ss_pred CCCCCcCHHHHHHHHHHHHh--cCCCEEEEEccCCCc
Q 037346 508 DPFSPVDDHTGAHLFKFCWV--SSSKTVIYATHQVEF 542 (1156)
Q Consensus 508 ep~s~lD~~~~~~i~~~~~~--~~~~tvi~vtH~~~~ 542 (1156)
|||++||+.+++.+.+.+.. .+|+|+|++||+++.
T Consensus 153 EPt~~LD~~~~~~~~~~l~~~~~~~~tili~sH~~~~ 189 (190)
T TIGR01166 153 EPTAGLDPAGREQMLAILRRLRAEGMTVVISTHDVDL 189 (190)
T ss_pred CCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeecccc
Confidence 99999999999998876644 358899999999875
|
This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux. |
| >PLN03211 ABC transporter G-25; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.3e-33 Score=343.79 Aligned_cols=190 Identities=26% Similarity=0.386 Sum_probs=161.3
Q ss_pred CCCccccceEEeeCCeEEEEEcCCCCChHHHHHHHhCCCCCC--CcEEEEcCe---------EEEEecCCcCCC-ccHHH
Q 037346 372 PNPTLRNINLKVFHGMRVAVCGTVGSGKSSCLSCILGGVPKE--SGIIRLCGT---------KAYVAQSPWIQS-GKIEE 439 (1156)
Q Consensus 372 ~~~~l~~i~l~i~~g~~~~ivG~~GsGKSTll~~i~g~~~~~--~G~i~~~g~---------~~~v~Q~~~~~~-~ti~e 439 (1156)
++.+|+|+|+++++||+++|+||||||||||+++|+|..+|. +|+|.+||. ++||+|++.++. .||+|
T Consensus 80 ~~~iL~~vs~~i~~Ge~~aI~GpnGaGKSTLL~iLaG~~~~~~~sG~I~inG~~~~~~~~~~i~yv~Q~~~l~~~lTV~E 159 (659)
T PLN03211 80 ERTILNGVTGMASPGEILAVLGPSGSGKSTLLNALAGRIQGNNFTGTILANNRKPTKQILKRTGFVTQDDILYPHLTVRE 159 (659)
T ss_pred CCeeeeCCEEEEECCEEEEEECCCCCCHHHHHHHHhCCCCCCceeEEEEECCEECchhhccceEEECcccccCCcCCHHH
Confidence 457999999999999999999999999999999999999885 899999984 699999998875 59999
Q ss_pred HhhcCC------CCCH----HHHHHHHHHhCCchhhhhCCCCCcccccc-CCCCCCHHHHHHHHHHHhhccCCCeeeeeC
Q 037346 440 NILFGK------EMDR----ERYERVLEACSLKKDLEVLPFGDQTIIGE-RGINLSGGQKQRIQIARPLYQDADIFLLDD 508 (1156)
Q Consensus 440 ni~~~~------~~~~----~~~~~~~~~~~l~~~~~~~~~g~~t~v~~-~g~~LSgGqkqRi~lAral~~~~~illlDe 508 (1156)
|+.|.. ..++ ++.+++++..+|.+ ..+|.+|+ .+..||||||||++|||||+++|+|++|||
T Consensus 160 ~l~~~a~~~~~~~~~~~~~~~~v~~~l~~lgL~~-------~~~t~vg~~~~~~LSgGerqRv~ia~aL~~~P~iLlLDE 232 (659)
T PLN03211 160 TLVFCSLLRLPKSLTKQEKILVAESVISELGLTK-------CENTIIGNSFIRGISGGERKRVSIAHEMLINPSLLILDE 232 (659)
T ss_pred HHHHHHHhCCCCCCCHHHHHHHHHHHHHHcCChh-------hcCceeCCCCCCCcChhhhhHHHHHHHHHhCCCEEEEeC
Confidence 998742 1222 23455666666543 34666765 467899999999999999999999999999
Q ss_pred CCCCcCHHHHHHHHHHHHh--cCCCEEEEEccCCCc-c-ccCCEEEEEeCCeEEEccChHHHHh
Q 037346 509 PFSPVDDHTGAHLFKFCWV--SSSKTVIYATHQVEF-L-PAADLILVIKDGKITQAGKYSDILN 568 (1156)
Q Consensus 509 p~s~lD~~~~~~i~~~~~~--~~~~tvi~vtH~~~~-~-~~~d~i~~l~~G~i~~~g~~~~l~~ 568 (1156)
||++||+.++.++.+.+.. .+|+|+|++||+++. + ..+|+|++|++|++++.|+++++.+
T Consensus 233 PtsgLD~~~~~~l~~~L~~l~~~g~TvI~~sH~~~~~i~~~~D~iilL~~G~iv~~G~~~~~~~ 296 (659)
T PLN03211 233 PTSGLDATAAYRLVLTLGSLAQKGKTIVTSMHQPSSRVYQMFDSVLVLSEGRCLFFGKGSDAMA 296 (659)
T ss_pred CCCCcCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhhceEEEecCCcEEEECCHHHHHH
Confidence 9999999999999887644 368999999999984 4 5699999999999999999988764
|
|
| >PRK14250 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.4e-33 Score=303.91 Aligned_cols=201 Identities=27% Similarity=0.460 Sum_probs=175.6
Q ss_pred EEEEEEEEEEcCCCCceeeCCCCCCHHHHHHHHhhcccCCCceEEEcCeeCCCCChHHHhhcCeeeccccccccccchhc
Q 037346 948 VNIRHLQVRYAPNLPLVLRGRTGSGKSTLIQTLFRIVESTAGHILIDGKDISLIGLHDLRTRLSIIPQDPTMFEGTTRSN 1027 (1156)
Q Consensus 948 I~~~~Vsf~Y~~~~~~vL~G~SGsGKSTL~~lL~rl~~p~~G~I~idG~di~~i~~~~LR~~i~~VpQdp~LF~gTIr~N 1027 (1156)
..++|++|...+++.++|.|+||||||||+++|+|+++|++|+|.+||.++...+...+|+.++++||++.+|..|+++|
T Consensus 17 ~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~i~~~~q~~~~~~~tv~e~ 96 (241)
T PRK14250 17 EILKDISVKFEGGAIYTIVGPSGAGKSTLIKLINRLIDPTEGSILIDGVDIKTIDVIDLRRKIGMVFQQPHLFEGTVKDN 96 (241)
T ss_pred eeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEhhhcChHHhhhcEEEEecCchhchhhHHHH
Confidence 47899999999999899999999999999999999999999999999999998888888999999999999999999999
Q ss_pred cCCCC---CCCHHHHHHHHHHcCCC-hHHHhhcCCcccc-------ccccccCCCEEEEecCCcCCCHHHHHHHHHHHHH
Q 037346 1028 LDPLE---EHADEQIWEALDKCQLG-DEVRKKKGKLDSQ-------GRVLLKKSKVLVLDEATASVDTATDNQIQQTLRQ 1096 (1156)
Q Consensus 1028 l~~~~---~~~deei~~al~~~~l~-~~i~~lp~gl~s~-------ARALLr~~~ILiLDEaTS~LD~~te~~I~~~l~~ 1096 (1156)
+.+.. ...++++.++++..++. +.....+..|..+ |||++++|++|||||||++||+++.+.+.+.|++
T Consensus 97 l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~ 176 (241)
T PRK14250 97 IEYGPMLKGEKNVDVEYYLSIVGLNKEYATRDVKNLSGGEAQRVSIARTLANNPEVLLLDEPTSALDPTSTEIIEELIVK 176 (241)
T ss_pred HhcchhhcCcHHHHHHHHHHHcCCCHHHhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHH
Confidence 97532 12245788999999996 4566666666544 8999999999999999999999999999999988
Q ss_pred hc--CCceEEEeecCcccccc-cCEEEEEeCcEEeeecChhHHhcCCCChHHHHH
Q 037346 1097 HF--SDCTVVTIAHRITSVLD-SAMVLLLNHGLIKEYDSPTKLLENKSSSFAQLV 1148 (1156)
Q Consensus 1097 ~~--~~~TvI~IaHrl~ti~~-~D~I~Vl~~G~IvE~G~~~eLl~~~~g~f~~l~ 1148 (1156)
.. .++|+|+|||+++.+.. ||+|++|++|++++.|++++++..+...|.+.+
T Consensus 177 ~~~~~g~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~~~~~~~~~~ 231 (241)
T PRK14250 177 LKNKMNLTVIWITHNMEQAKRIGDYTAFLNKGILVEYAKTYDFFTNPQNEVTKLF 231 (241)
T ss_pred HHHhCCCEEEEEeccHHHHHHhCCEEEEEeCCEEEEeCCHHHHhcCCCcHHHHHH
Confidence 64 37899999999998775 999999999999999999999876544455444
|
|
| >TIGR00955 3a01204 The Eye Pigment Precursor Transporter (EPP) Family protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.4e-33 Score=343.66 Aligned_cols=190 Identities=27% Similarity=0.408 Sum_probs=162.8
Q ss_pred CCCccccceEEeeCCeEEEEEcCCCCChHHHHHHHhCCCCCC---CcEEEEcCe----------EEEEecCCcCCC-ccH
Q 037346 372 PNPTLRNINLKVFHGMRVAVCGTVGSGKSSCLSCILGGVPKE---SGIIRLCGT----------KAYVAQSPWIQS-GKI 437 (1156)
Q Consensus 372 ~~~~l~~i~l~i~~g~~~~ivG~~GsGKSTll~~i~g~~~~~---~G~i~~~g~----------~~~v~Q~~~~~~-~ti 437 (1156)
++++|+|+|+++++||+++|+||||||||||+++|+|..++. +|+|.++|. ++||+|++++++ .||
T Consensus 37 ~~~iL~~vs~~i~~Ge~~aI~G~sGsGKSTLL~~L~g~~~~~~~~~G~i~~~g~~~~~~~~~~~i~yv~Q~~~~~~~lTV 116 (617)
T TIGR00955 37 RKHLLKNVSGVAKPGELLAVMGSSGAGKTTLMNALAFRSPKGVKGSGSVLLNGMPIDAKEMRAISAYVQQDDLFIPTLTV 116 (617)
T ss_pred ccccccCCEEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEECCHHHHhhhceeeccccccCccCcH
Confidence 578999999999999999999999999999999999999875 799999995 499999999885 599
Q ss_pred HHHhhcCCCC------C----HHHHHHHHHHhCCchhhhhCCCCCccccccC--CCCCCHHHHHHHHHHHhhccCCCeee
Q 037346 438 EENILFGKEM------D----RERYERVLEACSLKKDLEVLPFGDQTIIGER--GINLSGGQKQRIQIARPLYQDADIFL 505 (1156)
Q Consensus 438 ~eni~~~~~~------~----~~~~~~~~~~~~l~~~~~~~~~g~~t~v~~~--g~~LSgGqkqRi~lAral~~~~~ill 505 (1156)
+||+.|+... . +++.+++++..+|. +..+|.+|+. +..||||||||++|||||+.+|++++
T Consensus 117 ~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~-------~~~~t~vg~~~~~~~LSgGqrkRvsia~aL~~~p~vll 189 (617)
T TIGR00955 117 REHLMFQAHLRMPRRVTKKEKRERVDEVLQALGLR-------KCANTRIGVPGRVKGLSGGERKRLAFASELLTDPPLLF 189 (617)
T ss_pred HHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCch-------hcCcCccCCCCCCCCcCcchhhHHHHHHHHHcCCCEEE
Confidence 9999986421 1 12345555555543 3457889874 47899999999999999999999999
Q ss_pred eeCCCCCcCHHHHHHHHHHHHh--cCCCEEEEEccCCC-c-cccCCEEEEEeCCeEEEccChHHHHh
Q 037346 506 LDDPFSPVDDHTGAHLFKFCWV--SSSKTVIYATHQVE-F-LPAADLILVIKDGKITQAGKYSDILN 568 (1156)
Q Consensus 506 lDep~s~lD~~~~~~i~~~~~~--~~~~tvi~vtH~~~-~-~~~~d~i~~l~~G~i~~~g~~~~l~~ 568 (1156)
|||||++||+.++.++++.+.+ .+|+|+|+++|+++ . .+.+|++++|++|++++.|+++++.+
T Consensus 190 lDEPtsgLD~~~~~~l~~~L~~l~~~g~tvi~~~hq~~~~i~~~~D~i~ll~~G~~v~~G~~~~~~~ 256 (617)
T TIGR00955 190 CDEPTSGLDSFMAYSVVQVLKGLAQKGKTIICTIHQPSSELFELFDKIILMAEGRVAYLGSPDQAVP 256 (617)
T ss_pred eeCCCcchhHHHHHHHHHHHHHHHhCCCEEEEEeCCCCHHHHHHhceEEEeeCCeEEEECCHHHHHH
Confidence 9999999999999999887654 45899999999996 3 46799999999999999999998753
|
|
| >cd03253 ABCC_ATM1_transporter ATM1 is an ABC transporter that is expressed in the mitochondria | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.5e-33 Score=303.06 Aligned_cols=202 Identities=31% Similarity=0.532 Sum_probs=182.5
Q ss_pred EEEEEEEEEEcCCCCceeeCCCCCCHHHHHHHHhhcccCCCceEEEcCeeCCCCChHHHhhcCeeeccccccccccchhc
Q 037346 948 VNIRHLQVRYAPNLPLVLRGRTGSGKSTLIQTLFRIVESTAGHILIDGKDISLIGLHDLRTRLSIIPQDPTMFEGTTRSN 1027 (1156)
Q Consensus 948 I~~~~Vsf~Y~~~~~~vL~G~SGsGKSTL~~lL~rl~~p~~G~I~idG~di~~i~~~~LR~~i~~VpQdp~LF~gTIr~N 1027 (1156)
..++|++|...+++.++|.|+||||||||+++|.|+++|++|+|.+||.++.+.+...+|+.++|+||++.+|++|+++|
T Consensus 15 ~~l~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~v~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~tv~~n 94 (236)
T cd03253 15 PVLKDVSFTIPAGKKVAIVGPSGSGKSTILRLLFRFYDVSSGSILIDGQDIREVTLDSLRRAIGVVPQDTVLFNDTIGYN 94 (236)
T ss_pred ceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCEEEECCEEhhhCCHHHHHhhEEEECCCChhhcchHHHH
Confidence 47899999999999999999999999999999999999999999999999999998899999999999999999999999
Q ss_pred cCCCC-CCCHHHHHHHHHHcCCChHHHhhcCCcccc------------------ccccccCCCEEEEecCCcCCCHHHHH
Q 037346 1028 LDPLE-EHADEQIWEALDKCQLGDEVRKKKGKLDSQ------------------GRVLLKKSKVLVLDEATASVDTATDN 1088 (1156)
Q Consensus 1028 l~~~~-~~~deei~~al~~~~l~~~i~~lp~gl~s~------------------ARALLr~~~ILiLDEaTS~LD~~te~ 1088 (1156)
+.+.. ..+++++.++++.+++.+.+..+|.++++. ||||+++|++|||||||++||+++..
T Consensus 95 l~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~LS~G~~~rl~la~aL~~~p~llllDEP~~~LD~~~~~ 174 (236)
T cd03253 95 IRYGRPDATDEEVIEAAKAAQIHDKIMRFPDGYDTIVGERGLKLSGGEKQRVAIARAILKNPPILLLDEATSALDTHTER 174 (236)
T ss_pred HhhcCCCCCHHHHHHHHHHcCcHHHHHhccccccchhhcCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHH
Confidence 97653 345677888899999999888887765531 89999999999999999999999999
Q ss_pred HHHHHHHHhcCCceEEEeecCcccccccCEEEEEeCcEEeeecChhHHhcCCCChHHHHHHH
Q 037346 1089 QIQQTLRQHFSDCTVVTIAHRITSVLDSAMVLLLNHGLIKEYDSPTKLLENKSSSFAQLVAE 1150 (1156)
Q Consensus 1089 ~I~~~l~~~~~~~TvI~IaHrl~ti~~~D~I~Vl~~G~IvE~G~~~eLl~~~~g~f~~l~~~ 1150 (1156)
.+.+.|.+..++.|+|+++|+++.+..||++++|++|++++.|+++++..+ .+.|+.++.+
T Consensus 175 ~l~~~l~~~~~~~tiii~sh~~~~~~~~d~~~~l~~g~i~~~~~~~~~~~~-~~~~~~~~~~ 235 (236)
T cd03253 175 EIQAALRDVSKGRTTIVIAHRLSTIVNADKIIVLKDGRIVERGTHEELLAK-GGLYAEMWKA 235 (236)
T ss_pred HHHHHHHHhcCCCEEEEEcCCHHHHHhCCEEEEEECCEEEeeCCHHHHhhc-ccHHHHHHhc
Confidence 999999987668899999999999999999999999999999999999874 5777776653
|
Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK09700 D-allose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4e-33 Score=339.46 Aligned_cols=192 Identities=24% Similarity=0.394 Sum_probs=159.2
Q ss_pred ccEEEeeeEEEeCCCCCCCccccceEEeeCCeEEEEEcCCCCChHHHHHHHhCCCCCCCcEEEEcCe-------------
Q 037346 356 TAIEIIDGSFSWDFSSPNPTLRNINLKVFHGMRVAVCGTVGSGKSSCLSCILGGVPKESGIIRLCGT------------- 422 (1156)
Q Consensus 356 ~~i~~~~~~f~~~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKSTll~~i~g~~~~~~G~i~~~g~------------- 422 (1156)
..++++|+++.|. .+|+|+||+|++|++++|+||||||||||+++|+|+++|++|+|.++|.
T Consensus 264 ~~l~~~~l~~~~~-----~~l~~isl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~ 338 (510)
T PRK09700 264 TVFEVRNVTSRDR-----KKVRDISFSVCRGEILGFAGLVGSGRTELMNCLFGVDKRAGGEIRLNGKDISPRSPLDAVKK 338 (510)
T ss_pred cEEEEeCccccCC-----CcccceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCcCCCCeEEECCEECCCCCHHHHHHC
Confidence 3699999998752 3899999999999999999999999999999999999999999999872
Q ss_pred -EEEEecCC---cCC-CccHHHHhhcCCCC------------CH----HHHHHHHHHhCCc-hhhhhCCCCCccccccCC
Q 037346 423 -KAYVAQSP---WIQ-SGKIEENILFGKEM------------DR----ERYERVLEACSLK-KDLEVLPFGDQTIIGERG 480 (1156)
Q Consensus 423 -~~~v~Q~~---~~~-~~ti~eni~~~~~~------------~~----~~~~~~~~~~~l~-~~~~~~~~g~~t~v~~~g 480 (1156)
++|++|++ .++ +.|++||+.++... .. ++.+++++..++. +. .....
T Consensus 339 ~i~~v~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-----------~~~~~ 407 (510)
T PRK09700 339 GMAYITESRRDNGFFPNFSIAQNMAISRSLKDGGYKGAMGLFHEVDEQRTAENQRELLALKCHS-----------VNQNI 407 (510)
T ss_pred CcEEccCccccCCCcCCCcHHHHhccccccccccccccccccChHHHHHHHHHHHHhcCCCCCC-----------ccCcc
Confidence 69999984 354 45999999875321 11 2234555555553 22 23455
Q ss_pred CCCCHHHHHHHHHHHhhccCCCeeeeeCCCCCcCHHHHHHHHHHHHh--cCCCEEEEEccCCCccc-cCCEEEEEeCCeE
Q 037346 481 INLSGGQKQRIQIARPLYQDADIFLLDDPFSPVDDHTGAHLFKFCWV--SSSKTVIYATHQVEFLP-AADLILVIKDGKI 557 (1156)
Q Consensus 481 ~~LSgGqkqRi~lAral~~~~~illlDep~s~lD~~~~~~i~~~~~~--~~~~tvi~vtH~~~~~~-~~d~i~~l~~G~i 557 (1156)
.+|||||||||+|||||+.+|++|||||||++||+.+.+.+.+.+.. .+|+|+|++||+++.+. .||++++|++|++
T Consensus 408 ~~LSgGq~qrv~lAral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~g~tvi~vsHd~~~~~~~~d~i~~l~~G~i 487 (510)
T PRK09700 408 TELSGGNQQKVLISKWLCCCPEVIIFDEPTRGIDVGAKAEIYKVMRQLADDGKVILMVSSELPEIITVCDRIAVFCEGRL 487 (510)
T ss_pred ccCChHHHHHHHHHHHHhcCCCEEEECCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEEcCCHHHHHhhCCEEEEEECCEE
Confidence 78999999999999999999999999999999999999998876643 45899999999999875 5999999999999
Q ss_pred EEccCh
Q 037346 558 TQAGKY 563 (1156)
Q Consensus 558 ~~~g~~ 563 (1156)
+..++.
T Consensus 488 ~~~~~~ 493 (510)
T PRK09700 488 TQILTN 493 (510)
T ss_pred EEEecC
Confidence 987755
|
|
| >cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.4e-33 Score=277.20 Aligned_cols=141 Identities=32% Similarity=0.473 Sum_probs=129.5
Q ss_pred EEEeeeEEEeCCCCCCCccccceEEeeCCeEEEEEcCCCCChHHHHHHHhCCCCCCCcEEEEcC--eEEEEecCCcCCCc
Q 037346 358 IEIIDGSFSWDFSSPNPTLRNINLKVFHGMRVAVCGTVGSGKSSCLSCILGGVPKESGIIRLCG--TKAYVAQSPWIQSG 435 (1156)
Q Consensus 358 i~~~~~~f~~~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKSTll~~i~g~~~~~~G~i~~~g--~~~~v~Q~~~~~~~ 435 (1156)
++++|+++.|+. .++++++||++++||+++|+||||||||||+++|+|+++|++|+|.++| .++|++|
T Consensus 1 l~~~~l~~~~~~---~~~l~~~~~~~~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~~~~~i~~~~~------- 70 (144)
T cd03221 1 IELENLSKTYGG---KLLLKDISLTINPGDRIGLVGRNGAGKSTLLKLIAGELEPDEGIVTWGSTVKIGYFEQ------- 70 (144)
T ss_pred CEEEEEEEEECC---ceEEEeeEEEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCceEEEECCeEEEEEEcc-------
Confidence 468999999963 4699999999999999999999999999999999999999999999998 4788888
Q ss_pred cHHHHhhcCCCCCHHHHHHHHHHhCCchhhhhCCCCCccccccCCCCCCHHHHHHHHHHHhhccCCCeeeeeCCCCCcCH
Q 037346 436 KIEENILFGKEMDRERYERVLEACSLKKDLEVLPFGDQTIIGERGINLSGGQKQRIQIARPLYQDADIFLLDDPFSPVDD 515 (1156)
Q Consensus 436 ti~eni~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~t~v~~~g~~LSgGqkqRi~lAral~~~~~illlDep~s~lD~ 515 (1156)
|||||+||++||||++++|+++||||||++||+
T Consensus 71 -----------------------------------------------lS~G~~~rv~laral~~~p~illlDEP~~~LD~ 103 (144)
T cd03221 71 -----------------------------------------------LSGGEKMRLALAKLLLENPNLLLLDEPTNHLDL 103 (144)
T ss_pred -----------------------------------------------CCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCH
Confidence 999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhcCCCEEEEEccCCCcccc-CCEEEEEeCCe
Q 037346 516 HTGAHLFKFCWVSSSKTVIYATHQVEFLPA-ADLILVIKDGK 556 (1156)
Q Consensus 516 ~~~~~i~~~~~~~~~~tvi~vtH~~~~~~~-~d~i~~l~~G~ 556 (1156)
.+...+.+.+... ++|+|++||+++.+.. ||++++|++|+
T Consensus 104 ~~~~~l~~~l~~~-~~til~~th~~~~~~~~~d~v~~l~~g~ 144 (144)
T cd03221 104 ESIEALEEALKEY-PGTVILVSHDRYFLDQVATKIIELEDGK 144 (144)
T ss_pred HHHHHHHHHHHHc-CCEEEEEECCHHHHHHhCCEEEEEeCCC
Confidence 9999887765444 5799999999999864 99999999985
|
EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions. |
| >COG4152 ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-33 Score=285.59 Aligned_cols=199 Identities=25% Similarity=0.398 Sum_probs=170.6
Q ss_pred cEEEeeeEEEeCCCCCCCccccceEEeeCCeEEEEEcCCCCChHHHHHHHhCCCCCCCcEEEEcC---------eEEEEe
Q 037346 357 AIEIIDGSFSWDFSSPNPTLRNINLKVFHGMRVAVCGTVGSGKSSCLSCILGGVPKESGIIRLCG---------TKAYVA 427 (1156)
Q Consensus 357 ~i~~~~~~f~~~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKSTll~~i~g~~~~~~G~i~~~g---------~~~~v~ 427 (1156)
.+++++|+++|+ +..+++|+||++++|++.+++|+||+||||.+++|+|+++|++|+|.++| +|||.|
T Consensus 2 ~L~ie~vtK~Fg---~k~av~~isf~v~~G~i~GllG~NGAGKTTtfRmILglle~~~G~I~~~g~~~~~~~~~rIGyLP 78 (300)
T COG4152 2 ALEIEGVTKSFG---DKKAVDNISFEVPPGEIFGLLGPNGAGKTTTFRMILGLLEPTEGEITWNGGPLSQEIKNRIGYLP 78 (300)
T ss_pred ceEEecchhccC---ceeeecceeeeecCCeEEEeecCCCCCccchHHHHhccCCccCceEEEcCcchhhhhhhhcccCh
Confidence 478999999996 56899999999999999999999999999999999999999999999999 689999
Q ss_pred cCCcCC-CccHHHHhhcCCC---CCH----HHHHHHHHHhCCchhhhhCCCCCccccccCCCCCCHHHHHHHHHHHhhcc
Q 037346 428 QSPWIQ-SGKIEENILFGKE---MDR----ERYERVLEACSLKKDLEVLPFGDQTIIGERGINLSGGQKQRIQIARPLYQ 499 (1156)
Q Consensus 428 Q~~~~~-~~ti~eni~~~~~---~~~----~~~~~~~~~~~l~~~~~~~~~g~~t~v~~~g~~LSgGqkqRi~lAral~~ 499 (1156)
.+.-++ ..||.|-+.|-.. ... ++....+++..+... -.++..+||-|.+|+|-+--|+++
T Consensus 79 EERGLy~k~tv~dql~yla~LkGm~~~e~~~~~~~wLer~~i~~~-----------~~~kIk~LSKGnqQKIQfisaviH 147 (300)
T COG4152 79 EERGLYPKMTVEDQLKYLAELKGMPKAEIQKKLQAWLERLEIVGK-----------KTKKIKELSKGNQQKIQFISAVIH 147 (300)
T ss_pred hhhccCccCcHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcccccc-----------ccchHHHhhhhhhHHHHHHHHHhc
Confidence 999876 4699999987422 222 334445555444321 135667999999999999999999
Q ss_pred CCCeeeeeCCCCCcCHHHHHHHHHHHHh--cCCCEEEEEccCCCcccc-CCEEEEEeCCeEEEccChHHHHhc
Q 037346 500 DADIFLLDDPFSPVDDHTGAHLFKFCWV--SSSKTVIYATHQVEFLPA-ADLILVIKDGKITQAGKYSDILNS 569 (1156)
Q Consensus 500 ~~~illlDep~s~lD~~~~~~i~~~~~~--~~~~tvi~vtH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~~~ 569 (1156)
+|+++|||||||+|||.+.+.+-+.++. .+|+|||++||+++.+.. ||++++|++|+.+.+|+.+++...
T Consensus 148 ePeLlILDEPFSGLDPVN~elLk~~I~~lk~~GatIifSsH~Me~vEeLCD~llmL~kG~~V~~G~v~~ir~~ 220 (300)
T COG4152 148 EPELLILDEPFSGLDPVNVELLKDAIFELKEEGATIIFSSHRMEHVEELCDRLLMLKKGQTVLYGTVEDIRRS 220 (300)
T ss_pred CCCEEEecCCccCCChhhHHHHHHHHHHHHhcCCEEEEecchHHHHHHHhhhhheecCCceEEeccHHHHHHh
Confidence 9999999999999999998877666654 579999999999999975 999999999999999999988753
|
|
| >COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.2e-33 Score=271.13 Aligned_cols=192 Identities=22% Similarity=0.350 Sum_probs=167.5
Q ss_pred EEEEEEEEEE-----------cCCCCceeeCCCCCCHHHHHHHHhhcccCCCceEEEcCeeCCCCChHHHhhcCeeeccc
Q 037346 948 VNIRHLQVRY-----------APNLPLVLRGRTGSGKSTLIQTLFRIVESTAGHILIDGKDISLIGLHDLRTRLSIIPQD 1016 (1156)
Q Consensus 948 I~~~~Vsf~Y-----------~~~~~~vL~G~SGsGKSTL~~lL~rl~~p~~G~I~idG~di~~i~~~~LR~~i~~VpQd 1016 (1156)
|.+++|.|+| ++++.+++.||||||||||++++.||..|.+|+|.|+|+|....++. ++-+++++||
T Consensus 2 l~L~~V~~~y~~~~~~fdl~v~~ge~vAi~GpSGaGKSTLLnLIAGF~~P~~G~i~i~g~d~t~~~P~--~RPVSmlFQE 79 (231)
T COG3840 2 LALDDVRFSYGHLPMRFDLTVPAGEIVAILGPSGAGKSTLLNLIAGFETPASGEILINGVDHTASPPA--ERPVSMLFQE 79 (231)
T ss_pred ccccceEEeeCcceEEEEEeecCCcEEEEECCCCccHHHHHHHHHhccCCCCceEEEcCeecCcCCcc--cCChhhhhhc
Confidence 3456666666 45677889999999999999999999999999999999999988775 4679999999
Q ss_pred cccccc-cchhccCCCC----CC---CHHHHHHHHHHcCCChHHHhhcCCcccc-------ccccccCCCEEEEecCCcC
Q 037346 1017 PTMFEG-TTRSNLDPLE----EH---ADEQIWEALDKCQLGDEVRKKKGKLDSQ-------GRVLLKKSKVLVLDEATAS 1081 (1156)
Q Consensus 1017 p~LF~g-TIr~Nl~~~~----~~---~deei~~al~~~~l~~~i~~lp~gl~s~-------ARALLr~~~ILiLDEaTS~ 1081 (1156)
..||.- ||++|+..+- .. ..+.+..|+.++|+.++...+|+.|.-+ ||+|+|+.|||+||||.|+
T Consensus 80 nNLFaHLtV~qNigLGl~P~LkL~a~~r~~v~~aa~~vGl~~~~~RLP~~LSGGqRQRvALARclvR~~PilLLDEPFsA 159 (231)
T COG3840 80 NNLFAHLTVAQNIGLGLSPGLKLNAEQREKVEAAAAQVGLAGFLKRLPGELSGGQRQRVALARCLVREQPILLLDEPFSA 159 (231)
T ss_pred cccchhhhhhhhhcccCCcccccCHHHHHHHHHHHHHhChhhHhhhCccccCchHHHHHHHHHHHhccCCeEEecCchhh
Confidence 999975 9999997642 12 2466999999999999999999988765 8999999999999999999
Q ss_pred CCHHHHHHHHHHHHHhc--CCceEEEeecCccccc-ccCEEEEEeCcEEeeecChhHHhcCCC
Q 037346 1082 VDTATDNQIQQTLRQHF--SDCTVVTIAHRITSVL-DSAMVLLLNHGLIKEYDSPTKLLENKS 1141 (1156)
Q Consensus 1082 LD~~te~~I~~~l~~~~--~~~TvI~IaHrl~ti~-~~D~I~Vl~~G~IvE~G~~~eLl~~~~ 1141 (1156)
||+.-...+...+.+.. ++.|+++|||.++.+. -+|+++++++|||+..|+-+++++.+.
T Consensus 160 LdP~LR~eMl~Lv~~l~~E~~~TllmVTH~~~Da~~ia~~~~fl~~Gri~~~g~~~~~~~~~~ 222 (231)
T COG3840 160 LDPALRAEMLALVSQLCDERKMTLLMVTHHPEDAARIADRVVFLDNGRIAAQGSTQELLSGKA 222 (231)
T ss_pred cCHHHHHHHHHHHHHHHHhhCCEEEEEeCCHHHHHHhhhceEEEeCCEEEeeccHHHHhccCC
Confidence 99999999888887765 4779999999998765 499999999999999999999997543
|
|
| >cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.7e-33 Score=302.46 Aligned_cols=189 Identities=28% Similarity=0.432 Sum_probs=167.5
Q ss_pred EEEEEEEEEEcCCCCceeeCCCCCCHHHHHHHHhhcc-----cCCCceEEEcCeeCCCCC--hHHHhhcCeeeccccccc
Q 037346 948 VNIRHLQVRYAPNLPLVLRGRTGSGKSTLIQTLFRIV-----ESTAGHILIDGKDISLIG--LHDLRTRLSIIPQDPTMF 1020 (1156)
Q Consensus 948 I~~~~Vsf~Y~~~~~~vL~G~SGsGKSTL~~lL~rl~-----~p~~G~I~idG~di~~i~--~~~LR~~i~~VpQdp~LF 1020 (1156)
..++|++|...+++.++|.|+||||||||+++|+|++ +|++|+|.++|.++.+.+ ...+|++++++||++.+|
T Consensus 14 ~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~ 93 (227)
T cd03260 14 HALKDISLDIPKGEITALIGPSGCGKSTLLRLLNRLNDLIPGAPDEGEVLLDGKDIYDLDVDVLELRRRVGMVFQKPNPF 93 (227)
T ss_pred eeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCCeEEEECCEEhhhcchHHHHHHhhEEEEecCchhc
Confidence 4799999999999999999999999999999999999 999999999999998877 667889999999999999
Q ss_pred cccchhccCCCC---C-C----CHHHHHHHHHHcCCChHHHhhc--CCcccc-------ccccccCCCEEEEecCCcCCC
Q 037346 1021 EGTTRSNLDPLE---E-H----ADEQIWEALDKCQLGDEVRKKK--GKLDSQ-------GRVLLKKSKVLVLDEATASVD 1083 (1156)
Q Consensus 1021 ~gTIr~Nl~~~~---~-~----~deei~~al~~~~l~~~i~~lp--~gl~s~-------ARALLr~~~ILiLDEaTS~LD 1083 (1156)
..|+++|+.+.. . . .++++.++++.+++.+.....+ ..|..+ ||||+++|++|||||||++||
T Consensus 94 ~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LSgG~~qrv~la~al~~~p~llllDEPt~~LD 173 (227)
T cd03260 94 PGSIYDNVAYGLRLHGIKLKEELDERVEEALRKAALWDEVKDRLHALGLSGGQQQRLCLARALANEPEVLLLDEPTSALD 173 (227)
T ss_pred cccHHHHHHhHHHhcCCCcHHHHHHHHHHHHHHcCCChHHhccCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCC
Confidence 889999997531 1 1 1356889999999988776663 666554 899999999999999999999
Q ss_pred HHHHHHHHHHHHHhcCCceEEEeecCccccc-ccCEEEEEeCcEEeeecChhHH
Q 037346 1084 TATDNQIQQTLRQHFSDCTVVTIAHRITSVL-DSAMVLLLNHGLIKEYDSPTKL 1136 (1156)
Q Consensus 1084 ~~te~~I~~~l~~~~~~~TvI~IaHrl~ti~-~~D~I~Vl~~G~IvE~G~~~eL 1136 (1156)
+++.+.+.+.|++..+++|+|+|||+++.+. .||+|++|++|++++.|+++++
T Consensus 174 ~~~~~~l~~~l~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~ 227 (227)
T cd03260 174 PISTAKIEELIAELKKEYTIVIVTHNMQQAARVADRTAFLLNGRLVEFGPTEQI 227 (227)
T ss_pred HHHHHHHHHHHHHHhhCcEEEEEeccHHHHHHhCCEEEEEeCCEEEEecCcccC
Confidence 9999999999998865689999999999876 4999999999999999998764
|
The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD). |
| >TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.1e-33 Score=337.30 Aligned_cols=197 Identities=19% Similarity=0.251 Sum_probs=160.9
Q ss_pred cEEEeeeEEEeCCCCCCCccccceEEeeCCeEEEEEcCCCCChHHHHHHHhCCCCC-CCcEEEEcC--------------
Q 037346 357 AIEIIDGSFSWDFSSPNPTLRNINLKVFHGMRVAVCGTVGSGKSSCLSCILGGVPK-ESGIIRLCG-------------- 421 (1156)
Q Consensus 357 ~i~~~~~~f~~~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKSTll~~i~g~~~~-~~G~i~~~g-------------- 421 (1156)
.++++|+++.|+..++..+|+|+||+|++||+++|+||||||||||+++|+|.++| ++|+|.++|
T Consensus 257 ~l~~~~l~~~~~~~~~~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~~~G~i~~~g~~~~~~~~~~~~~~ 336 (500)
T TIGR02633 257 ILEARNLTCWDVINPHRKRVDDVSFSLRRGEILGVAGLVGAGRTELVQALFGAYPGKFEGNVFINGKPVDIRNPAQAIRA 336 (500)
T ss_pred eEEEeCCcccccccccccccccceeEEeCCcEEEEeCCCCCCHHHHHHHHhCCCCCCCCeEEEECCEECCCCCHHHHHhC
Confidence 59999999988422235699999999999999999999999999999999999985 899999987
Q ss_pred eEEEEecCC---cCC-CccHHHHhhcCCC--------CC----HHHHHHHHHHhCCchhhhhCCCCCccccccCCCCCCH
Q 037346 422 TKAYVAQSP---WIQ-SGKIEENILFGKE--------MD----RERYERVLEACSLKKDLEVLPFGDQTIIGERGINLSG 485 (1156)
Q Consensus 422 ~~~~v~Q~~---~~~-~~ti~eni~~~~~--------~~----~~~~~~~~~~~~l~~~~~~~~~g~~t~v~~~g~~LSg 485 (1156)
+++|++|++ .++ +.|++||+.++.. .+ +++.+++++.+++... ........|||
T Consensus 337 ~i~~v~q~~~~~~l~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~----------~~~~~~~~LSg 406 (500)
T TIGR02633 337 GIAMVPEDRKRHGIVPILGVGKNITLSVLKSFCFKMRIDAAAELQIIGSAIQRLKVKTA----------SPFLPIGRLSG 406 (500)
T ss_pred CCEEcCcchhhCCcCCCCCHHHHhcchhhhhhccCCcCCHHHHHHHHHHHHHhcCccCC----------CccCccccCCH
Confidence 269999996 344 4699999987521 11 1234556666665321 11234568999
Q ss_pred HHHHHHHHHHhhccCCCeeeeeCCCCCcCHHHHHHHHHHHHh--cCCCEEEEEccCCCccc-cCCEEEEEeCCeEEEccC
Q 037346 486 GQKQRIQIARPLYQDADIFLLDDPFSPVDDHTGAHLFKFCWV--SSSKTVIYATHQVEFLP-AADLILVIKDGKITQAGK 562 (1156)
Q Consensus 486 GqkqRi~lAral~~~~~illlDep~s~lD~~~~~~i~~~~~~--~~~~tvi~vtH~~~~~~-~~d~i~~l~~G~i~~~g~ 562 (1156)
|||||++||||++.+|++|||||||++||+.+++.+++.+.. .+|.|+|++||+++.+. .||++++|++|+++..++
T Consensus 407 Gqkqrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tviivsHd~~~~~~~~d~v~~l~~G~i~~~~~ 486 (500)
T TIGR02633 407 GNQQKAVLAKMLLTNPRVLILDEPTRGVDVGAKYEIYKLINQLAQEGVAIIVVSSELAEVLGLSDRVLVIGEGKLKGDFV 486 (500)
T ss_pred HHHHHHHHHHHHhhCCCEEEEcCCCCCcCHhHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEEEc
Confidence 999999999999999999999999999999999988775533 45899999999999886 599999999999987665
Q ss_pred h
Q 037346 563 Y 563 (1156)
Q Consensus 563 ~ 563 (1156)
.
T Consensus 487 ~ 487 (500)
T TIGR02633 487 N 487 (500)
T ss_pred c
Confidence 4
|
Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005). |
| >PRK15177 Vi polysaccharide export ATP-binding protein VexC; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-32 Score=296.25 Aligned_cols=183 Identities=18% Similarity=0.205 Sum_probs=149.3
Q ss_pred ccccceEEeeCCeEEEEEcCCCCChHHHHHHHhCCCCCCCcEEE-EcCeEEEEecCCcCCCc-cHHHHhhcCC---CCCH
Q 037346 375 TLRNINLKVFHGMRVAVCGTVGSGKSSCLSCILGGVPKESGIIR-LCGTKAYVAQSPWIQSG-KIEENILFGK---EMDR 449 (1156)
Q Consensus 375 ~l~~i~l~i~~g~~~~ivG~~GsGKSTll~~i~g~~~~~~G~i~-~~g~~~~v~Q~~~~~~~-ti~eni~~~~---~~~~ 449 (1156)
+|+|+||+|++|++++|+||||||||||+++|+|+++|++|+|. ++|....+.|++.+++. |++||+.+.. ..+.
T Consensus 2 vl~~vs~~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~~~sG~i~~~~~~~~~~~~~~~l~~~ltv~enl~~~~~~~~~~~ 81 (213)
T PRK15177 2 VLDKTDFVMGYHEHIGILAAPGSGKTTLTRLLCGLDAPDEGDFIGLRGDALPLGANSFILPGLTGEENARMMASLYGLDG 81 (213)
T ss_pred eeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCccCCCCCEEEecCceeccccccccCCcCcHHHHHHHHHHHcCCCH
Confidence 68999999999999999999999999999999999999999997 78765556677777764 9999998642 2233
Q ss_pred HHHHH-HHHHhCCchhhhhCCCCCccccccCCCCCCHHHHHHHHHHHhhccCCCeeeeeCCCCCcCHHHHHHHHHHHHh-
Q 037346 450 ERYER-VLEACSLKKDLEVLPFGDQTIIGERGINLSGGQKQRIQIARPLYQDADIFLLDDPFSPVDDHTGAHLFKFCWV- 527 (1156)
Q Consensus 450 ~~~~~-~~~~~~l~~~~~~~~~g~~t~v~~~g~~LSgGqkqRi~lAral~~~~~illlDep~s~lD~~~~~~i~~~~~~- 527 (1156)
++..+ +.+..++... .......||||||||++||||++.+|+++|||||++++|+.+++.+.+.+..
T Consensus 82 ~~~~~~~~~~~~l~~~-----------~~~~~~~lS~G~~qrv~la~al~~~p~llllDEP~~~lD~~~~~~~~~~l~~~ 150 (213)
T PRK15177 82 DEFSHFCYQLTQLEQC-----------YTDRVSEYSVTMKTHLAFAINLLLPCRLYIADGKLYTGDNATQLRMQAALACQ 150 (213)
T ss_pred HHHHHHHHHHhChhHH-----------hhchHhhcCHHHHHHHHHHHHHhcCCCEEEECCCCccCCHHHHHHHHHHHHHH
Confidence 33222 2233333221 1234467999999999999999999999999999999999999888776543
Q ss_pred cCCCEEEEEccCCCccc-cCCEEEEEeCCeEEEccChHHHHh
Q 037346 528 SSSKTVIYATHQVEFLP-AADLILVIKDGKITQAGKYSDILN 568 (1156)
Q Consensus 528 ~~~~tvi~vtH~~~~~~-~~d~i~~l~~G~i~~~g~~~~l~~ 568 (1156)
.+++|+|++||+++.+. .||++++|++|++++.|+.++...
T Consensus 151 ~~~~~ii~vsH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~ 192 (213)
T PRK15177 151 LQQKGLIVLTHNPRLIKEHCHAFGVLLHGKITMCEDLAQATA 192 (213)
T ss_pred hhCCcEEEEECCHHHHHHhcCeeEEEECCeEEEeCCHHHHHH
Confidence 45689999999999986 599999999999999999887753
|
|
| >PRK13650 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.4e-33 Score=309.93 Aligned_cols=192 Identities=23% Similarity=0.384 Sum_probs=173.0
Q ss_pred EEEEEEEEEEcCCCCceeeCCCCCCHHHHHHHHhhcccCCCceEEEcCeeCCCCChHHHhhcCeeecccc--ccccccch
Q 037346 948 VNIRHLQVRYAPNLPLVLRGRTGSGKSTLIQTLFRIVESTAGHILIDGKDISLIGLHDLRTRLSIIPQDP--TMFEGTTR 1025 (1156)
Q Consensus 948 I~~~~Vsf~Y~~~~~~vL~G~SGsGKSTL~~lL~rl~~p~~G~I~idG~di~~i~~~~LR~~i~~VpQdp--~LF~gTIr 1025 (1156)
..++||+|...+++.++|.|+||||||||+++|+|+++|++|+|.+||.++.+.+...+|+++++|+|+| .++..|++
T Consensus 21 ~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~i~~v~q~~~~~~~~~tv~ 100 (279)
T PRK13650 21 YTLNDVSFHVKQGEWLSIIGHNGSGKSTTVRLIDGLLEAESGQIIIDGDLLTEENVWDIRHKIGMVFQNPDNQFVGATVE 100 (279)
T ss_pred eeeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEECCcCcHHHHHhhceEEEcChHHhcccccHH
Confidence 4799999999999999999999999999999999999999999999999999888888999999999998 35677999
Q ss_pred hccCCCC---CCC----HHHHHHHHHHcCCChHHHhhcCCcccc-------ccccccCCCEEEEecCCcCCCHHHHHHHH
Q 037346 1026 SNLDPLE---EHA----DEQIWEALDKCQLGDEVRKKKGKLDSQ-------GRVLLKKSKVLVLDEATASVDTATDNQIQ 1091 (1156)
Q Consensus 1026 ~Nl~~~~---~~~----deei~~al~~~~l~~~i~~lp~gl~s~-------ARALLr~~~ILiLDEaTS~LD~~te~~I~ 1091 (1156)
+||.+.. ..+ ++.+.++++.+++.++....|..|..+ ||||+++|+||||||||++||+.+.+.+.
T Consensus 101 eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGq~qrv~lAral~~~p~lLlLDEPt~~LD~~~~~~l~ 180 (279)
T PRK13650 101 DDVAFGLENKGIPHEEMKERVNEALELVGMQDFKEREPARLSGGQKQRVAIAGAVAMRPKIIILDEATSMLDPEGRLELI 180 (279)
T ss_pred HHHHhhHHhCCCCHHHHHHHHHHHHHHCCCHhHhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHH
Confidence 9997542 122 356889999999999888888777655 89999999999999999999999999999
Q ss_pred HHHHHhcC--CceEEEeecCcccccccCEEEEEeCcEEeeecChhHHhcC
Q 037346 1092 QTLRQHFS--DCTVVTIAHRITSVLDSAMVLLLNHGLIKEYDSPTKLLEN 1139 (1156)
Q Consensus 1092 ~~l~~~~~--~~TvI~IaHrl~ti~~~D~I~Vl~~G~IvE~G~~~eLl~~ 1139 (1156)
+.|++..+ ++|+|+|||+++.+..||+|++|++|++++.|+++++.+.
T Consensus 181 ~~l~~l~~~~g~tilivtH~~~~~~~~dri~~l~~G~i~~~g~~~~~~~~ 230 (279)
T PRK13650 181 KTIKGIRDDYQMTVISITHDLDEVALSDRVLVMKNGQVESTSTPRELFSR 230 (279)
T ss_pred HHHHHHHHhcCCEEEEEecCHHHHHhCCEEEEEECCEEEEECCHHHHHcC
Confidence 99988753 7899999999999888999999999999999999998864
|
|
| >PRK11819 putative ABC transporter ATP-binding protein; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-32 Score=333.92 Aligned_cols=200 Identities=24% Similarity=0.304 Sum_probs=166.3
Q ss_pred ccEEEeeeEEEeCCCCCCCccccceEEeeCCeEEEEEcCCCCChHHHHHHHhCCCCCCCcEEEEcC--eEEEEecCC-cC
Q 037346 356 TAIEIIDGSFSWDFSSPNPTLRNINLKVFHGMRVAVCGTVGSGKSSCLSCILGGVPKESGIIRLCG--TKAYVAQSP-WI 432 (1156)
Q Consensus 356 ~~i~~~~~~f~~~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKSTll~~i~g~~~~~~G~i~~~g--~~~~v~Q~~-~~ 432 (1156)
..++++|+++.|+ ++++|+|+||+|++|++++|+||||||||||+++|+|+++|++|+|.+++ .++|+||++ .+
T Consensus 323 ~~l~~~~l~~~~~---~~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~p~~G~i~~~~~~~i~~v~q~~~~~ 399 (556)
T PRK11819 323 KVIEAENLSKSFG---DRLLIDDLSFSLPPGGIVGIIGPNGAGKSTLFKMITGQEQPDSGTIKIGETVKLAYVDQSRDAL 399 (556)
T ss_pred eEEEEEeEEEEEC---CeeeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCceEEEEEeCchhhc
Confidence 4699999999996 35799999999999999999999999999999999999999999999976 589999997 45
Q ss_pred C-CccHHHHhhcCCCC-----CHHHHHHHHHHhCCchhhhhCCCCCccccccCCCCCCHHHHHHHHHHHhhccCCCeeee
Q 037346 433 Q-SGKIEENILFGKEM-----DRERYERVLEACSLKKDLEVLPFGDQTIIGERGINLSGGQKQRIQIARPLYQDADIFLL 506 (1156)
Q Consensus 433 ~-~~ti~eni~~~~~~-----~~~~~~~~~~~~~l~~~~~~~~~g~~t~v~~~g~~LSgGqkqRi~lAral~~~~~illl 506 (1156)
+ +.|++||+.++... .+.+.+..++.+++..+. ......+||||||||++||||++.+|++|||
T Consensus 400 ~~~~tv~e~l~~~~~~~~~~~~~~~~~~~l~~~~l~~~~----------~~~~~~~LSgG~~qrv~la~al~~~p~lllL 469 (556)
T PRK11819 400 DPNKTVWEEISGGLDIIKVGNREIPSRAYVGRFNFKGGD----------QQKKVGVLSGGERNRLHLAKTLKQGGNVLLL 469 (556)
T ss_pred CCCCCHHHHHHhhcccccccccHHHHHHHHHhCCCChhH----------hcCchhhCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 4 45999999876321 123344566666664211 1344578999999999999999999999999
Q ss_pred eCCCCCcCHHHHHHHHHHHHhcCCCEEEEEccCCCccc-cCCEEEEEeC-CeEE-EccChHHHHhc
Q 037346 507 DDPFSPVDDHTGAHLFKFCWVSSSKTVIYATHQVEFLP-AADLILVIKD-GKIT-QAGKYSDILNS 569 (1156)
Q Consensus 507 Dep~s~lD~~~~~~i~~~~~~~~~~tvi~vtH~~~~~~-~~d~i~~l~~-G~i~-~~g~~~~l~~~ 569 (1156)
||||++||+.+...+.+.+.... .|+|+|||+++++. .||+|++|++ |++. ..|+++++.+.
T Consensus 470 DEPt~~LD~~~~~~l~~~l~~~~-~tvi~vtHd~~~~~~~~d~i~~l~~~g~~~~~~g~~~~~~~~ 534 (556)
T PRK11819 470 DEPTNDLDVETLRALEEALLEFP-GCAVVISHDRWFLDRIATHILAFEGDSQVEWFEGNFQEYEED 534 (556)
T ss_pred cCCCCCCCHHHHHHHHHHHHhCC-CeEEEEECCHHHHHHhCCEEEEEECCCeEEEecCCHHHHHHH
Confidence 99999999999999988765554 48999999999886 4999999986 7876 68888887654
|
|
| >TIGR01257 rim_protein retinal-specific rim ABC transporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-32 Score=361.87 Aligned_cols=203 Identities=16% Similarity=0.244 Sum_probs=173.9
Q ss_pred CccEEEeeeEEEeCCCCCCCccccceEEeeCCeEEEEEcCCCCChHHHHHHHhCCCCCCCcEEEEcCe------------
Q 037346 355 DTAIEIIDGSFSWDFSSPNPTLRNINLKVFHGMRVAVCGTVGSGKSSCLSCILGGVPKESGIIRLCGT------------ 422 (1156)
Q Consensus 355 ~~~i~~~~~~f~~~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKSTll~~i~g~~~~~~G~i~~~g~------------ 422 (1156)
+..++++|+++.|+. .++++++|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.
T Consensus 1935 ~~~L~v~nLsK~Y~~-~~~~aL~~ISf~I~~GEi~gLLG~NGAGKTTLlkmL~Gll~ptsG~I~i~G~~i~~~~~~~r~~ 2013 (2272)
T TIGR01257 1935 TDILRLNELTKVYSG-TSSPAVDRLCVGVRPGECFGLLGVNGAGKTTTFKMLTGDTTVTSGDATVAGKSILTNISDVHQN 2013 (2272)
T ss_pred CceEEEEEEEEEECC-CCceEEEeeEEEEcCCcEEEEECCCCCcHHHHHHHHhCCCCCCccEEEECCEECcchHHHHhhh
Confidence 346999999999963 2357999999999999999999999999999999999999999999999882
Q ss_pred EEEEecCCcCCC-ccHHHHhhcCC---CCC----HHHHHHHHHHhCCchhhhhCCCCCccccccCCCCCCHHHHHHHHHH
Q 037346 423 KAYVAQSPWIQS-GKIEENILFGK---EMD----RERYERVLEACSLKKDLEVLPFGDQTIIGERGINLSGGQKQRIQIA 494 (1156)
Q Consensus 423 ~~~v~Q~~~~~~-~ti~eni~~~~---~~~----~~~~~~~~~~~~l~~~~~~~~~g~~t~v~~~g~~LSgGqkqRi~lA 494 (1156)
+|||||++.++. .|++||+.+.. ... +++.+++++.++|.+..+ ++..+||||||||++||
T Consensus 2014 IGy~pQ~~~L~~~LTv~E~L~l~a~l~g~~~~~~~~~v~~lLe~lgL~~~~d-----------k~~~~LSGGqKqRLslA 2082 (2272)
T TIGR01257 2014 MGYCPQFDAIDDLLTGREHLYLYARLRGVPAEEIEKVANWSIQSLGLSLYAD-----------RLAGTYSGGNKRKLSTA 2082 (2272)
T ss_pred EEEEeccccCCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHHHhc-----------CChhhCCHHHHHHHHHH
Confidence 799999988775 59999997631 111 234456777788765443 34568999999999999
Q ss_pred HhhccCCCeeeeeCCCCCcCHHHHHHHHHHHHh--cCCCEEEEEccCCCccc-cCCEEEEEeCCeEEEccChHHHHhc
Q 037346 495 RPLYQDADIFLLDDPFSPVDDHTGAHLFKFCWV--SSSKTVIYATHQVEFLP-AADLILVIKDGKITQAGKYSDILNS 569 (1156)
Q Consensus 495 ral~~~~~illlDep~s~lD~~~~~~i~~~~~~--~~~~tvi~vtH~~~~~~-~~d~i~~l~~G~i~~~g~~~~l~~~ 569 (1156)
|||+.+|+|++|||||+|||+.+++.+++.+.. .+|+|+|++||+++.+. .||+|++|++|+++..|+++++.++
T Consensus 2083 ~ALi~~P~VLLLDEPTsGLDp~sr~~l~~lL~~l~~~g~TIILtTH~mee~e~lcDrV~IL~~G~i~~~Gs~q~Lk~~ 2160 (2272)
T TIGR01257 2083 IALIGCPPLVLLDEPTTGMDPQARRMLWNTIVSIIREGRAVVLTSHSMEECEALCTRLAIMVKGAFQCLGTIQHLKSK 2160 (2272)
T ss_pred HHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHHHHH
Confidence 999999999999999999999999999886644 45899999999999986 4999999999999999999998653
|
This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease. |
| >COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.2e-33 Score=295.21 Aligned_cols=194 Identities=27% Similarity=0.392 Sum_probs=166.4
Q ss_pred CeEEEEEEEEEEcCCCCceeeCCCCCCHHHHHHHHhhcccCCCceEEEcCeeCCCCChHHHhhcCeeeccccc-cccccc
Q 037346 946 GEVNIRHLQVRYAPNLPLVLRGRTGSGKSTLIQTLFRIVESTAGHILIDGKDISLIGLHDLRTRLSIIPQDPT-MFEGTT 1024 (1156)
Q Consensus 946 g~I~~~~Vsf~Y~~~~~~vL~G~SGsGKSTL~~lL~rl~~p~~G~I~idG~di~~i~~~~LR~~i~~VpQdp~-LF~gTI 1024 (1156)
+...++|+||+.++++-.+|.||||||||||+++|.|+..|.+|+|++||.++.+++.+++-+++|||||++. -|.-|+
T Consensus 14 ~~~il~~ls~~i~~G~i~~iiGpNG~GKSTLLk~l~g~l~p~~G~V~l~g~~i~~~~~kelAk~ia~vpQ~~~~~~~~tV 93 (258)
T COG1120 14 GKPILDDLSFSIPKGEITGILGPNGSGKSTLLKCLAGLLKPKSGEVLLDGKDIASLSPKELAKKLAYVPQSPSAPFGLTV 93 (258)
T ss_pred CeeEEecceEEecCCcEEEEECCCCCCHHHHHHHHhccCCCCCCEEEECCCchhhcCHHHHhhhEEEeccCCCCCCCcEE
Confidence 4567777777777888788889999999999999999999999999999999999999999999999999974 566699
Q ss_pred hhccCCC--------CCCC--HH-HHHHHHHHcCCChHHHhhcCCcccc-------ccccccCCCEEEEecCCcCCCHHH
Q 037346 1025 RSNLDPL--------EEHA--DE-QIWEALDKCQLGDEVRKKKGKLDSQ-------GRVLLKKSKVLVLDEATASVDTAT 1086 (1156)
Q Consensus 1025 r~Nl~~~--------~~~~--de-ei~~al~~~~l~~~i~~lp~gl~s~-------ARALLr~~~ILiLDEaTS~LD~~t 1086 (1156)
+|=+.++ ...+ |+ .+.+||+.+++.++....=..|..+ ||||.++|+||+||||||+||...
T Consensus 94 ~d~V~~GR~p~~~~~~~~~~~D~~~v~~aL~~~~~~~la~r~~~~LSGGerQrv~iArALaQ~~~iLLLDEPTs~LDi~~ 173 (258)
T COG1120 94 YELVLLGRYPHLGLFGRPSKEDEEIVEEALELLGLEHLADRPVDELSGGERQRVLIARALAQETPILLLDEPTSHLDIAH 173 (258)
T ss_pred eehHhhcCCcccccccCCCHhHHHHHHHHHHHhCcHHHhcCcccccChhHHHHHHHHHHHhcCCCEEEeCCCccccCHHH
Confidence 9877543 1122 33 5889999999998876543333322 899999999999999999999999
Q ss_pred HHHHHHHHHHhc--CCceEEEeecCccc-ccccCEEEEEeCcEEeeecChhHHhcC
Q 037346 1087 DNQIQQTLRQHF--SDCTVVTIAHRITS-VLDSAMVLLLNHGLIKEYDSPTKLLEN 1139 (1156)
Q Consensus 1087 e~~I~~~l~~~~--~~~TvI~IaHrl~t-i~~~D~I~Vl~~G~IvE~G~~~eLl~~ 1139 (1156)
.-.|++.++++. +++|+|+|.|+++. .+.||++++|++|+|+..|+|+|.+..
T Consensus 174 Q~evl~ll~~l~~~~~~tvv~vlHDlN~A~ryad~~i~lk~G~i~a~G~p~evlT~ 229 (258)
T COG1120 174 QIEVLELLRDLNREKGLTVVMVLHDLNLAARYADHLILLKDGKIVAQGTPEEVLTE 229 (258)
T ss_pred HHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEECCeEEeecCcchhcCH
Confidence 999999999876 36999999999976 567999999999999999999999853
|
|
| >TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-32 Score=333.67 Aligned_cols=199 Identities=25% Similarity=0.316 Sum_probs=165.0
Q ss_pred ccEEEeeeEEEeCCCCCCCccccceEEeeCCeEEEEEcCCCCChHHHHHHHhCCCCCCCcEEEEcC--eEEEEecCCc-C
Q 037346 356 TAIEIIDGSFSWDFSSPNPTLRNINLKVFHGMRVAVCGTVGSGKSSCLSCILGGVPKESGIIRLCG--TKAYVAQSPW-I 432 (1156)
Q Consensus 356 ~~i~~~~~~f~~~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKSTll~~i~g~~~~~~G~i~~~g--~~~~v~Q~~~-~ 432 (1156)
..++++|+++.|+ ++++|+|+||+|++|++++|+||||||||||+++|+|+++|++|+|.+++ .++|++|++. +
T Consensus 321 ~~l~~~~l~~~~~---~~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~~G~i~~~~~~~i~~v~q~~~~~ 397 (552)
T TIGR03719 321 KVIEAENLSKGFG---DKLLIDDLSFKLPPGGIVGVIGPNGAGKSTLFRMITGQEQPDSGTIKIGETVKLAYVDQSRDAL 397 (552)
T ss_pred eEEEEeeEEEEEC---CeeeeccceEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCCeEEEECCceEEEEEeCCcccc
Confidence 4699999999996 35799999999999999999999999999999999999999999999966 5899999973 4
Q ss_pred C-CccHHHHhhcCCC---CC--HHHHHHHHHHhCCchhhhhCCCCCccccccCCCCCCHHHHHHHHHHHhhccCCCeeee
Q 037346 433 Q-SGKIEENILFGKE---MD--RERYERVLEACSLKKDLEVLPFGDQTIIGERGINLSGGQKQRIQIARPLYQDADIFLL 506 (1156)
Q Consensus 433 ~-~~ti~eni~~~~~---~~--~~~~~~~~~~~~l~~~~~~~~~g~~t~v~~~g~~LSgGqkqRi~lAral~~~~~illl 506 (1156)
+ ..|++||+.++.. .. +.+.+++++.+++.... ......+||||||||++||||++.+|++|||
T Consensus 398 ~~~~tv~e~l~~~~~~~~~~~~~~~~~~~l~~~~l~~~~----------~~~~~~~LSgGe~qrv~la~al~~~p~lllL 467 (552)
T TIGR03719 398 DPNKTVWEEISGGLDIIQLGKREVPSRAYVGRFNFKGSD----------QQKKVGQLSGGERNRVHLAKTLKSGGNVLLL 467 (552)
T ss_pred CCCCcHHHHHHhhccccccCcchHHHHHHHHhCCCChhH----------hcCchhhCCHHHHHHHHHHHHHhhCCCEEEE
Confidence 4 4599999988642 11 23344566666664221 1244578999999999999999999999999
Q ss_pred eCCCCCcCHHHHHHHHHHHHhcCCCEEEEEccCCCccc-cCCEEEEEeC-CeEE-EccChHHHHh
Q 037346 507 DDPFSPVDDHTGAHLFKFCWVSSSKTVIYATHQVEFLP-AADLILVIKD-GKIT-QAGKYSDILN 568 (1156)
Q Consensus 507 Dep~s~lD~~~~~~i~~~~~~~~~~tvi~vtH~~~~~~-~~d~i~~l~~-G~i~-~~g~~~~l~~ 568 (1156)
||||++||+.+.+.+.+.+.... .|+|+|||+++++. .||+|++|++ |++. ..|+++++.+
T Consensus 468 DEPt~~LD~~~~~~l~~~l~~~~-~~viivsHd~~~~~~~~d~i~~l~~~~~~~~~~g~~~~~~~ 531 (552)
T TIGR03719 468 DEPTNDLDVETLRALEEALLEFA-GCAVVISHDRWFLDRIATHILAFEGDSHVEWFEGNYSEYEE 531 (552)
T ss_pred eCCCCCCCHHHHHHHHHHHHHCC-CeEEEEeCCHHHHHHhCCEEEEEECCCeEEEeCCCHHHHHH
Confidence 99999999999999987765554 48999999999986 4999999987 5775 6788876654
|
Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown. |
| >COG1122 CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-32 Score=295.33 Aligned_cols=194 Identities=26% Similarity=0.428 Sum_probs=172.7
Q ss_pred eEEEEEEEEEEcCCCCceeeCCCCCCHHHHHHHHhhcccCCCceEEEcCeeCC-CCChHHHhhcCeeecccc--cccccc
Q 037346 947 EVNIRHLQVRYAPNLPLVLRGRTGSGKSTLIQTLFRIVESTAGHILIDGKDIS-LIGLHDLRTRLSIIPQDP--TMFEGT 1023 (1156)
Q Consensus 947 ~I~~~~Vsf~Y~~~~~~vL~G~SGsGKSTL~~lL~rl~~p~~G~I~idG~di~-~i~~~~LR~~i~~VpQdp--~LF~gT 1023 (1156)
...++||+|...+++.++|.|+||||||||+++|.|++.|++|.|.+||.+++ ..+...+|+++|+|+|+| ++|..|
T Consensus 17 ~~~l~~v~~~i~~Ge~~~i~G~nGsGKSTL~~~l~GLl~p~~G~v~~~g~~~~~~~~~~~~~~~vG~VfQnpd~q~~~~t 96 (235)
T COG1122 17 KAALKDVSLEIEKGERVLLIGPNGSGKSTLLKLLNGLLKPTSGEVLVDGLDTSSEKSLLELRQKVGLVFQNPDDQLFGPT 96 (235)
T ss_pred ceeeeeeEEEECCCCEEEEECCCCCCHHHHHHHHcCcCcCCCCEEEECCeeccchhhHHHhhcceEEEEECcccccccCc
Confidence 45677777777777777888999999999999999999999999999999999 488999999999999999 799999
Q ss_pred chhccCCCCC---CC----HHHHHHHHHHcCCChHHHhhcCCcccc-------ccccccCCCEEEEecCCcCCCHHHHHH
Q 037346 1024 TRSNLDPLEE---HA----DEQIWEALDKCQLGDEVRKKKGKLDSQ-------GRVLLKKSKVLVLDEATASVDTATDNQ 1089 (1156)
Q Consensus 1024 Ir~Nl~~~~~---~~----deei~~al~~~~l~~~i~~lp~gl~s~-------ARALLr~~~ILiLDEaTS~LD~~te~~ 1089 (1156)
|.+.+.++.. .+ ++.+.++|+.+++.++....|..|.-+ |.+|..+|+|||||||||+||++..+.
T Consensus 97 V~~evafg~~n~g~~~~e~~~rv~~~l~~vgl~~~~~r~p~~LSGGqkqRvaIA~vLa~~P~iliLDEPta~LD~~~~~~ 176 (235)
T COG1122 97 VEDEVAFGLENLGLPREEIEERVAEALELVGLEELLDRPPFNLSGGQKQRVAIAGVLAMGPEILLLDEPTAGLDPKGRRE 176 (235)
T ss_pred HHHHHhhchhhcCCCHHHHHHHHHHHHHHcCchhhccCCccccCCcceeeHHhhHHHHcCCCEEEEcCCCCCCCHHHHHH
Confidence 9999987532 23 345889999999999977777766644 789999999999999999999999999
Q ss_pred HHHHHHHhcC--CceEEEeecCcccccc-cCEEEEEeCcEEeeecChhHHhcCC
Q 037346 1090 IQQTLRQHFS--DCTVVTIAHRITSVLD-SAMVLLLNHGLIKEYDSPTKLLENK 1140 (1156)
Q Consensus 1090 I~~~l~~~~~--~~TvI~IaHrl~ti~~-~D~I~Vl~~G~IvE~G~~~eLl~~~ 1140 (1156)
+.+.++++.+ ++|+|+|||+++.+.. |||++||++|+++.+|+|++++++.
T Consensus 177 l~~~l~~L~~~~~~tii~~tHd~~~~~~~ad~v~vl~~G~i~~~g~p~~i~~~~ 230 (235)
T COG1122 177 LLELLKKLKEEGGKTIIIVTHDLELVLEYADRVVVLDDGKILADGDPAEIFNDA 230 (235)
T ss_pred HHHHHHHHHhcCCCeEEEEeCcHHHHHhhCCEEEEEECCEEeecCCHHHHhhhh
Confidence 9999999864 4799999999999988 9999999999999999999999753
|
|
| >COG4615 PvdE ABC-type siderophore export system, fused ATPase and permease components [Secondary metabolites biosynthesis, transport, and catabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-30 Score=281.76 Aligned_cols=405 Identities=19% Similarity=0.251 Sum_probs=278.7
Q ss_pred HHHHHHHHHHHHHHHHhccccccccccccccchhhhhcccccccchhhhcccchHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 037346 712 AGYKTATQLFNKMHVCIFRAPMYFFDSTPSGRILNRVSENVKWADQSAADMDIPYDIGAFAFSMIQLLGIIVVMSLVAWQ 791 (1156)
Q Consensus 712 ~~~~~~~~l~~~l~~~ll~~p~~ff~~~~~G~il~R~s~d~~~~d~~~~d~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 791 (1156)
+|.+...++|.++.++++.+|+.-+++-..++++.+++ .|+..+. .--..+..++++.+..+++.+.+++.+++
T Consensus 75 ~gq~~I~klr~~~~~kil~tplerier~~~~rlla~L~-----~Dvr~IS-f~~s~lp~~~qa~il~l~s~aYLayLSp~ 148 (546)
T COG4615 75 LGQHFIYKLRSEFIKKILDTPLERIERLGSARLLAGLT-----SDVRNIS-FAFSRLPELVQAIILTLGSAAYLAYLSPK 148 (546)
T ss_pred HHHHHHHHHHHHHHHHHhcCHHHHHHHhcccchhhhhc-----cccccee-ehHhhhHHHHHHHHHHHHHHHHHHHhhHH
Confidence 57788999999999999999999999999999999999 4544443 22234556778888889999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhChHHHHHHhhccchhhhhhcchHHH--HHHHHHHHHHH----HhhH
Q 037346 792 VLIVFVPVIATFIWYQQYYITSTRELSRLIGVCKAPVIQQFSETISGSTTIRSLDQELR--FRDTNMKLIDE----YSRP 865 (1156)
Q Consensus 792 l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~e~l~Gi~tIra~~~e~~--~~~~~~~~~~~----~~~~ 865 (1156)
++++++..+++.++.....+....+-.+...+....++.+.+..++|.+..+....-.+ +.+.+...-.. ....
T Consensus 149 mf~l~vV~ivv~~~~~~~~m~rv~k~~~aare~ed~Lq~~y~~il~G~KEL~l~r~R~~~~h~~~~~~~a~~~r~~~~~~ 228 (546)
T COG4615 149 MFLLTVVWIVVTIWGGFVLMARVYKHMAAARETEDKLQNDYQTILEGRKELTLNRERAEYVHNNLYIPDAQEYRHHIIRA 228 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhcchhhheechHHHHHHHhhhcCcchHHHHhhhhhh
Confidence 98777666655555444333333333333444556788999999999999887653322 22222211111 1111
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH-----------------HHHHHHHHHHcCCCccchHHHHHHHhHHHHHHHHhhcCCCC
Q 037346 866 KFHIAGAMEWLRFCIDMLSSIT-----------------FAFSLAFLISVPNGIIHPYKNLERKIISVERILQCACIPSE 928 (1156)
Q Consensus 866 ~~~~~~~~~~~~~~l~~~~~~~-----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~Ri~~~~~~~~e 928 (1156)
.........|....+-.+..++ ++.++.++-.+....++....+..+.++.++|.++...|..
T Consensus 229 n~f~~la~~~~ni~l~~lIGlvf~lal~~~w~st~~a~tivlvlLflr~pL~s~vgilP~l~~AqvA~~kiakle~~~~~ 308 (546)
T COG4615 229 NTFHLLAVNWSNIMLLGLIGLVFWLALSLGWASTNVAATIVLVLLFLRTPLLSAVGILPTLLTAQVAFNKIAKLELAPYK 308 (546)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhhHHHHHHHHHHHHhhHHHHHHhhhhHHHHHHHHHHHHHHhhcCCcc
Confidence 1111123334333221111111 11112222222223334446677788899999886543222
Q ss_pred CcccccCCCCCCCCCCCCeEEEEEEEEEEcCCC----C----------ceeeCCCCCCHHHHHHHHhhcccCCCceEEEc
Q 037346 929 PALVIEATKPNNSRPSHGEVNIRHLQVRYAPNL----P----------LVLRGRTGSGKSTLIQTLFRIVESTAGHILID 994 (1156)
Q Consensus 929 ~~~~~~~~~~~~~~p~~g~I~~~~Vsf~Y~~~~----~----------~vL~G~SGsGKSTL~~lL~rl~~p~~G~I~id 994 (1156)
.. .....+.++| ..++++||.|.|.+.. | +-|.|.+||||||++++|.|+|.|++|+|++|
T Consensus 309 a~--~~~~q~~p~~---~~lelrnvrfay~~~~FhvgPiNl~ikrGelvFliG~NGsGKST~~~LLtGL~~PqsG~I~ld 383 (546)
T COG4615 309 AD--FPRPQAFPDW---KTLELRNVRFAYQDNAFHVGPINLTIKRGELVFLIGGNGSGKSTLAMLLTGLYQPQSGEILLD 383 (546)
T ss_pred cc--CCCCCcCCcc---cceeeeeeeeccCcccceecceeeEEecCcEEEEECCCCCcHHHHHHHHhcccCCCCCceeEC
Confidence 11 1122223335 4699999999997652 2 22459999999999999999999999999999
Q ss_pred CeeCCCCChHHHhhcCeeeccccccccccchhccCCCCCCCHHHHHHHHHHcCCChHHHhh-----cCCccccc------
Q 037346 995 GKDISLIGLHDLRTRLSIIPQDPTMFEGTTRSNLDPLEEHADEQIWEALDKCQLGDEVRKK-----KGKLDSQG------ 1063 (1156)
Q Consensus 995 G~di~~i~~~~LR~~i~~VpQdp~LF~gTIr~Nl~~~~~~~deei~~al~~~~l~~~i~~l-----p~gl~s~A------ 1063 (1156)
|.+++.=+++++|+-++-|+-|-+||+.++ -+.+..+.+.+..-|++..+.....-. |-++.|+-
T Consensus 384 g~pV~~e~ledYR~LfSavFsDyhLF~~ll----~~e~~as~q~i~~~LqrLel~~ktsl~d~~fs~~kLStGQkKRlAl 459 (546)
T COG4615 384 GKPVSAEQLEDYRKLFSAVFSDYHLFDQLL----GPEGKASPQLIEKWLQRLELAHKTSLNDGRFSNLKLSTGQKKRLAL 459 (546)
T ss_pred CccCCCCCHHHHHHHHHHHhhhHhhhHhhh----CCccCCChHHHHHHHHHHHHhhhhcccCCcccccccccchHHHHHH
Confidence 999999999999999999999999999875 222335666676666666554333211 23455553
Q ss_pred -cccccCCCEEEEecCCcCCCHHHHHHHHHHHHHhc--CCceEEEeecCcccccccCEEEEEeCcEEeeec
Q 037346 1064 -RVLLKKSKVLVLDEATASVDTATDNQIQQTLRQHF--SDCTVVTIAHRITSVLDSAMVLLLNHGLIKEYD 1131 (1156)
Q Consensus 1064 -RALLr~~~ILiLDEaTS~LD~~te~~I~~~l~~~~--~~~TvI~IaHrl~ti~~~D~I~Vl~~G~IvE~G 1131 (1156)
-|++-+.+|+++||=-+.-||.=.+...+.+-... .|+|++.|||+-.-...|||++.|++|+++|.-
T Consensus 460 l~AllEeR~Ilv~DEWAADQDPaFRR~FY~~lLp~LK~qGKTI~aIsHDd~YF~~ADrll~~~~G~~~e~t 530 (546)
T COG4615 460 LLALLEERDILVLDEWAADQDPAFRREFYQVLLPLLKEQGKTIFAISHDDHYFIHADRLLEMRNGQLSELT 530 (546)
T ss_pred HHHHHhhCCeEEeehhhccCChHHHHHHHHHHhHHHHHhCCeEEEEecCchhhhhHHHHHHHhcCceeecc
Confidence 38899999999999999999999988877654332 499999999999999999999999999999863
|
|
| >PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-32 Score=333.95 Aligned_cols=194 Identities=21% Similarity=0.321 Sum_probs=160.5
Q ss_pred cEEEeeeEEEeCCCCCCCccccceEEeeCCeEEEEEcCCCCChHHHHHHHhCCCCCCCcEEEEcCe--------------
Q 037346 357 AIEIIDGSFSWDFSSPNPTLRNINLKVFHGMRVAVCGTVGSGKSSCLSCILGGVPKESGIIRLCGT-------------- 422 (1156)
Q Consensus 357 ~i~~~~~~f~~~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKSTll~~i~g~~~~~~G~i~~~g~-------------- 422 (1156)
.++++|+++. .+++|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+
T Consensus 257 ~l~~~~~~~~-------~~l~~isl~i~~Ge~~~iiG~NGsGKSTLlk~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~ 329 (501)
T PRK11288 257 RLRLDGLKGP-------GLREPISFSVRAGEIVGLFGLVGAGRSELMKLLYGATRRTAGQVYLDGKPIDIRSPRDAIRAG 329 (501)
T ss_pred EEEEeccccC-------CcccceeEEEeCCcEEEEEcCCCCCHHHHHHHHcCCCcCCCceEEECCEECCCCCHHHHHhCC
Confidence 5889999732 4899999999999999999999999999999999999999999999873
Q ss_pred EEEEecCCc---CC-CccHHHHhhcCCCC---------C----HHHHHHHHHHhCCchhhhhCCCCCccccccCCCCCCH
Q 037346 423 KAYVAQSPW---IQ-SGKIEENILFGKEM---------D----RERYERVLEACSLKKDLEVLPFGDQTIIGERGINLSG 485 (1156)
Q Consensus 423 ~~~v~Q~~~---~~-~~ti~eni~~~~~~---------~----~~~~~~~~~~~~l~~~~~~~~~g~~t~v~~~g~~LSg 485 (1156)
++|++|+|. ++ ..|+.||+.++... . +++.++.++.+++..+ .......+|||
T Consensus 330 i~~~~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~----------~~~~~~~~LSg 399 (501)
T PRK11288 330 IMLCPEDRKAEGIIPVHSVADNINISARRHHLRAGCLINNRWEAENADRFIRSLNIKTP----------SREQLIMNLSG 399 (501)
T ss_pred CEEcCcCHhhCCCcCCCCHHHHhccccchhhcccccccChHHHHHHHHHHHHhcCcccC----------CccCccccCCH
Confidence 589999972 44 57999999875310 1 1234455666665311 12345578999
Q ss_pred HHHHHHHHHHhhccCCCeeeeeCCCCCcCHHHHHHHHHHHHh--cCCCEEEEEccCCCccc-cCCEEEEEeCCeEEEccC
Q 037346 486 GQKQRIQIARPLYQDADIFLLDDPFSPVDDHTGAHLFKFCWV--SSSKTVIYATHQVEFLP-AADLILVIKDGKITQAGK 562 (1156)
Q Consensus 486 GqkqRi~lAral~~~~~illlDep~s~lD~~~~~~i~~~~~~--~~~~tvi~vtH~~~~~~-~~d~i~~l~~G~i~~~g~ 562 (1156)
|||||++||||++.+|++|||||||++||+.+.+.+.+.+.. ..|.|+|++|||++.+. .||++++|++|+++..|+
T Consensus 400 Gq~qrl~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tviivsHd~~~~~~~~d~i~~l~~g~i~~~~~ 479 (501)
T PRK11288 400 GNQQKAILGRWLSEDMKVILLDEPTRGIDVGAKHEIYNVIYELAAQGVAVLFVSSDLPEVLGVADRIVVMREGRIAGELA 479 (501)
T ss_pred HHHHHHHHHHHHccCCCEEEEcCCCCCCCHhHHHHHHHHHHHHHhCCCEEEEECCCHHHHHhhCCEEEEEECCEEEEEEc
Confidence 999999999999999999999999999999999999876533 45889999999999985 599999999999999998
Q ss_pred hHHHH
Q 037346 563 YSDIL 567 (1156)
Q Consensus 563 ~~~l~ 567 (1156)
.+++.
T Consensus 480 ~~~~~ 484 (501)
T PRK11288 480 REQAT 484 (501)
T ss_pred cccCC
Confidence 87643
|
|
| >PRK13631 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-32 Score=312.86 Aligned_cols=190 Identities=22% Similarity=0.331 Sum_probs=157.6
Q ss_pred EEEEEEEEcCCCCceeeCCCCCCHHHHHHHHhhcccCCCceEEEcCeeCCCC----------------ChHHHhhcCeee
Q 037346 950 IRHLQVRYAPNLPLVLRGRTGSGKSTLIQTLFRIVESTAGHILIDGKDISLI----------------GLHDLRTRLSII 1013 (1156)
Q Consensus 950 ~~~Vsf~Y~~~~~~vL~G~SGsGKSTL~~lL~rl~~p~~G~I~idG~di~~i----------------~~~~LR~~i~~V 1013 (1156)
++||+|...+++.++|.|+||||||||+++|+|+++|++|+|.+||+++.+. +...+|+++++|
T Consensus 42 L~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~L~Gl~~p~~G~I~i~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~v 121 (320)
T PRK13631 42 LNNISYTFEKNKIYFIIGNSGSGKSTLVTHFNGLIKSKYGTIQVGDIYIGDKKNNHELITNPYSKKIKNFKELRRRVSMV 121 (320)
T ss_pred eeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEECCEEcccccccccccccccccccchHHHHHhcEEEE
Confidence 3444444444444567799999999999999999999999999999998753 356789999999
Q ss_pred cccc--ccccccchhccCCCC---CCCH----HHHHHHHHHcCCC-hHHHhhcCCcccc-------ccccccCCCEEEEe
Q 037346 1014 PQDP--TMFEGTTRSNLDPLE---EHAD----EQIWEALDKCQLG-DEVRKKKGKLDSQ-------GRVLLKKSKVLVLD 1076 (1156)
Q Consensus 1014 pQdp--~LF~gTIr~Nl~~~~---~~~d----eei~~al~~~~l~-~~i~~lp~gl~s~-------ARALLr~~~ILiLD 1076 (1156)
+|+| .+|++|+++|+.++. ..++ +.+.++++.+++. ++....|..|..+ ||||+++|+|||||
T Consensus 122 ~Q~~~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~LSgGqkqRvaiAraL~~~p~iLLLD 201 (320)
T PRK13631 122 FQFPEYQLFKDTIEKDIMFGPVALGVKKSEAKKLAKFYLNKMGLDDSYLERSPFGLSGGQKRRVAIAGILAIQPEILIFD 201 (320)
T ss_pred EECchhccccchHHHHHHhhHHhcCCCHHHHHHHHHHHHHHcCCChhHhcCCcccCCHHHHHHHHHHHHHHcCCCEEEEE
Confidence 9998 699999999997542 1222 3466789999996 5666666666544 89999999999999
Q ss_pred cCCcCCCHHHHHHHHHHHHHhc-CCceEEEeecCcccc-cccCEEEEEeCcEEeeecChhHHhcC
Q 037346 1077 EATASVDTATDNQIQQTLRQHF-SDCTVVTIAHRITSV-LDSAMVLLLNHGLIKEYDSPTKLLEN 1139 (1156)
Q Consensus 1077 EaTS~LD~~te~~I~~~l~~~~-~~~TvI~IaHrl~ti-~~~D~I~Vl~~G~IvE~G~~~eLl~~ 1139 (1156)
|||++||+.+...+.+.|++.. +++|||+|||+++.+ ..||+|+||++|+|++.|+|++++.+
T Consensus 202 EPtsgLD~~~~~~l~~~L~~l~~~g~TiiivtHd~~~~~~~adri~vl~~G~i~~~g~~~~~~~~ 266 (320)
T PRK13631 202 EPTAGLDPKGEHEMMQLILDAKANNKTVFVITHTMEHVLEVADEVIVMDKGKILKTGTPYEIFTD 266 (320)
T ss_pred CCccCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEeCCHHHHhcC
Confidence 9999999999999999998763 578999999999987 56999999999999999999987653
|
|
| >KOG0066 consensus eIF2-interacting protein ABC50 (ABC superfamily) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.2e-32 Score=293.34 Aligned_cols=196 Identities=24% Similarity=0.341 Sum_probs=134.8
Q ss_pred cEEEeeeEEEeCCCCCCCccccceEEeeCCeEEEEEcCCCCChHHHHHHHhCC---CCCCCcEEEEcCeEEEEecCCcCC
Q 037346 357 AIEIIDGSFSWDFSSPNPTLRNINLKVFHGMRVAVCGTVGSGKSSCLSCILGG---VPKESGIIRLCGTKAYVAQSPWIQ 433 (1156)
Q Consensus 357 ~i~~~~~~f~~~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKSTll~~i~g~---~~~~~G~i~~~g~~~~v~Q~~~~~ 433 (1156)
.|.++|.+.+-. ++..+.|.||.|-.|..+++|||||-||||||+-|..- +||. =.+-||.|+...-
T Consensus 264 DIKiEnF~ISA~---Gk~LFvnA~L~Iv~GRRYGLVGPNG~GKTTLLkHIa~RalaIPpn-------IDvLlCEQEvvad 333 (807)
T KOG0066|consen 264 DIKIENFDISAQ---GKLLFVNASLTIVYGRRYGLVGPNGMGKTTLLKHIAARALAIPPN-------IDVLLCEQEVVAD 333 (807)
T ss_pred cceeeeeeeecc---cceeeeccceEEEecceecccCCCCCchHHHHHHHHhhhccCCCC-------CceEeeeeeeeec
Confidence 377777776653 45788999999999999999999999999999998743 2331 1246777775543
Q ss_pred CccHHHHhh---------------------cCCCCCHHHHHHHHH---HhCCch-------hhhhCCCCCccccccCC-C
Q 037346 434 SGKIEENIL---------------------FGKEMDRERYERVLE---ACSLKK-------DLEVLPFGDQTIIGERG-I 481 (1156)
Q Consensus 434 ~~ti~eni~---------------------~~~~~~~~~~~~~~~---~~~l~~-------~~~~~~~g~~t~v~~~g-~ 481 (1156)
+.|--+-|+ -|.....++.+++.+ +.+... .+. ..|...++.+++ .
T Consensus 334 ~t~Ai~tvl~aD~kRl~lLeee~~L~~q~e~Gd~taaErl~~v~~ELraiGA~sAEarARRILA--GLGFskEMQ~rPt~ 411 (807)
T KOG0066|consen 334 STSAIDTVLKADKKRLALLEEEAKLMSQIEEGDTTAAERLKEVADELRAIGADSAEARARRILA--GLGFSKEMQERPTT 411 (807)
T ss_pred CcHHHHHHHHhhHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHHhccccchhHHHHHHh--hcCCChhHhcCCcc
Confidence 333222222 111111223332221 111110 111 123444444444 4
Q ss_pred CCCHHHHHHHHHHHhhccCCCeeeeeCCCCCcCHHHHHHHHHHHHhcCCCEEEEEccCCCcccc-CCEEEEEeCCeEE-E
Q 037346 482 NLSGGQKQRIQIARPLYQDADIFLLDDPFSPVDDHTGAHLFKFCWVSSSKTVIYATHQVEFLPA-ADLILVIKDGKIT-Q 559 (1156)
Q Consensus 482 ~LSgGqkqRi~lAral~~~~~illlDep~s~lD~~~~~~i~~~~~~~~~~tvi~vtH~~~~~~~-~d~i~~l~~G~i~-~ 559 (1156)
.+|||.|.||+|||||+..|.+|.|||||++||-...-|+-+.+ +-..+|.++|+||-.++.. |..|+.+++.++- +
T Consensus 412 kFSGGWRMRvSLARALflEPTLLMLDEPTNHLDLNAVIWLdNYL-QgWkKTLLIVSHDQgFLD~VCtdIIHLD~qkLhyY 490 (807)
T KOG0066|consen 412 KFSGGWRMRVSLARALFLEPTLLMLDEPTNHLDLNAVIWLDNYL-QGWKKTLLIVSHDQGFLDSVCTDIIHLDNQKLHYY 490 (807)
T ss_pred ccCCceeeehhHHHHHhcCceeeeecCCccccccceeeehhhHH-hhhhheeEEEecccchHHHHHHHHhhhhhhhhhhh
Confidence 69999999999999999999999999999999999887775443 4456899999999999975 9999999988773 5
Q ss_pred ccChHH
Q 037346 560 AGKYSD 565 (1156)
Q Consensus 560 ~g~~~~ 565 (1156)
.|+|.-
T Consensus 491 rGNY~~ 496 (807)
T KOG0066|consen 491 RGNYTL 496 (807)
T ss_pred cchHHH
Confidence 666643
|
|
| >cd03249 ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1 | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-32 Score=299.45 Aligned_cols=201 Identities=30% Similarity=0.534 Sum_probs=178.7
Q ss_pred eEEEEEEEEEEcCCCCceeeCCCCCCHHHHHHHHhhcccCCCceEEEcCeeCCCCChHHHhhcCeeeccccccccccchh
Q 037346 947 EVNIRHLQVRYAPNLPLVLRGRTGSGKSTLIQTLFRIVESTAGHILIDGKDISLIGLHDLRTRLSIIPQDPTMFEGTTRS 1026 (1156)
Q Consensus 947 ~I~~~~Vsf~Y~~~~~~vL~G~SGsGKSTL~~lL~rl~~p~~G~I~idG~di~~i~~~~LR~~i~~VpQdp~LF~gTIr~ 1026 (1156)
...++|++|...+++.++|.|+||||||||+++|+|+++|++|+|.++|.++...+...+|++++|+||++.+|..|+++
T Consensus 16 ~~~l~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~tv~e 95 (238)
T cd03249 16 VPILKGLSLTIPPGKTVALVGSSGCGKSTVVSLLERFYDPTSGEILLDGVDIRDLNLRWLRSQIGLVSQEPVLFDGTIAE 95 (238)
T ss_pred ccceeceEEEecCCCEEEEEeCCCCCHHHHHHHHhccCCCCCCEEEECCEehhhcCHHHHHhhEEEECCchhhhhhhHHH
Confidence 35799999999999999999999999999999999999999999999999999888888888999999999999999999
Q ss_pred ccCCCC-CCCHHHHHHHHHHcCCChHHHhhcCCcccc------------------ccccccCCCEEEEecCCcCCCHHHH
Q 037346 1027 NLDPLE-EHADEQIWEALDKCQLGDEVRKKKGKLDSQ------------------GRVLLKKSKVLVLDEATASVDTATD 1087 (1156)
Q Consensus 1027 Nl~~~~-~~~deei~~al~~~~l~~~i~~lp~gl~s~------------------ARALLr~~~ILiLDEaTS~LD~~te 1087 (1156)
|+.++. ....+++.+.++..++.+++..+|.++++. ||||+.+|++|||||||++||+.+.
T Consensus 96 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDEP~~gLD~~~~ 175 (238)
T cd03249 96 NIRYGKPDATDEEVEEAAKKANIHDFIMSLPDGYDTLVGERGSQLSGGQKQRIAIARALLRNPKILLLDEATSALDAESE 175 (238)
T ss_pred HhhccCCCCCHHHHHHHHHHcChHHHHHhhccccceeeccCCccCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHH
Confidence 998653 234567788888888888888887665431 8999999999999999999999999
Q ss_pred HHHHHHHHHhcCCceEEEeecCcccccccCEEEEEeCcEEeeecChhHHhcCCCChHHHHH
Q 037346 1088 NQIQQTLRQHFSDCTVVTIAHRITSVLDSAMVLLLNHGLIKEYDSPTKLLENKSSSFAQLV 1148 (1156)
Q Consensus 1088 ~~I~~~l~~~~~~~TvI~IaHrl~ti~~~D~I~Vl~~G~IvE~G~~~eLl~~~~g~f~~l~ 1148 (1156)
+.+.+.|++..+++|+|++||+++.+..||+|++|++|++++.|+++++... .+.++.++
T Consensus 176 ~~l~~~l~~~~~g~~vi~~sh~~~~~~~~d~v~~l~~G~i~~~~~~~~~~~~-~~~~~~~~ 235 (238)
T cd03249 176 KLVQEALDRAMKGRTTIVIAHRLSTIRNADLIAVLQNGQVVEQGTHDELMAQ-KGVYAKLV 235 (238)
T ss_pred HHHHHHHHHhcCCCEEEEEeCCHHHHhhCCEEEEEECCEEEEeCCHHHHhhc-ChhHHHHh
Confidence 9999999987678999999999999999999999999999999999998864 45555554
|
In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another. |
| >PRK10636 putative ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4e-32 Score=336.31 Aligned_cols=198 Identities=22% Similarity=0.349 Sum_probs=166.0
Q ss_pred ccEEEeeeEEEeCCCCCCCccccceEEeeCCeEEEEEcCCCCChHHHHHHHhCCCCCCCcEEEEcC--eEEEEecCC--c
Q 037346 356 TAIEIIDGSFSWDFSSPNPTLRNINLKVFHGMRVAVCGTVGSGKSSCLSCILGGVPKESGIIRLCG--TKAYVAQSP--W 431 (1156)
Q Consensus 356 ~~i~~~~~~f~~~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKSTll~~i~g~~~~~~G~i~~~g--~~~~v~Q~~--~ 431 (1156)
..|+++|+++.|+ ++++|+|+||+|++|++++|+||||||||||+++|+|+++|++|+|.+++ +++|++|++ .
T Consensus 311 ~~l~~~~l~~~y~---~~~il~~isl~i~~Ge~~~l~G~NGsGKSTLlk~l~G~~~p~~G~i~~~~~~~igy~~Q~~~~~ 387 (638)
T PRK10636 311 PLLKMEKVSAGYG---DRIILDSIKLNLVPGSRIGLLGRNGAGKSTLIKLLAGELAPVSGEIGLAKGIKLGYFAQHQLEF 387 (638)
T ss_pred ceEEEEeeEEEeC---CeeeeccceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEECCCEEEEEecCcchhh
Confidence 4699999999996 35799999999999999999999999999999999999999999999974 589999985 2
Q ss_pred CC-CccHHHHhhc-CCCCCHHHHHHHHHHhCCchhhhhCCCCCccccccCCCCCCHHHHHHHHHHHhhccCCCeeeeeCC
Q 037346 432 IQ-SGKIEENILF-GKEMDRERYERVLEACSLKKDLEVLPFGDQTIIGERGINLSGGQKQRIQIARPLYQDADIFLLDDP 509 (1156)
Q Consensus 432 ~~-~~ti~eni~~-~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~t~v~~~g~~LSgGqkqRi~lAral~~~~~illlDep 509 (1156)
+. ..|+.+++.. ......++.+++++.+++..+. +.....+|||||||||+||||++.+|++||||||
T Consensus 388 l~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~l~~~~----------~~~~~~~LSgGekqRl~La~~l~~~p~lLlLDEP 457 (638)
T PRK10636 388 LRADESPLQHLARLAPQELEQKLRDYLGGFGFQGDK----------VTEETRRFSGGEKARLVLALIVWQRPNLLLLDEP 457 (638)
T ss_pred CCccchHHHHHHHhCchhhHHHHHHHHHHcCCChhH----------hcCchhhCCHHHHHHHHHHHHHhcCCCEEEEcCC
Confidence 33 3488888742 2223345667777777774321 1234568999999999999999999999999999
Q ss_pred CCCcCHHHHHHHHHHHHhcCCCEEEEEccCCCccc-cCCEEEEEeCCeEE-EccChHHHH
Q 037346 510 FSPVDDHTGAHLFKFCWVSSSKTVIYATHQVEFLP-AADLILVIKDGKIT-QAGKYSDIL 567 (1156)
Q Consensus 510 ~s~lD~~~~~~i~~~~~~~~~~tvi~vtH~~~~~~-~~d~i~~l~~G~i~-~~g~~~~l~ 567 (1156)
|++||+.+...+.+.+.... .|||+||||++++. .||+|++|++|+++ +.|+++++.
T Consensus 458 t~~LD~~~~~~l~~~L~~~~-gtvi~vSHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~ 516 (638)
T PRK10636 458 TNHLDLDMRQALTEALIDFE-GALVVVSHDRHLLRSTTDDLYLVHDGKVEPFDGDLEDYQ 516 (638)
T ss_pred CCCCCHHHHHHHHHHHHHcC-CeEEEEeCCHHHHHHhCCEEEEEECCEEEEcCCCHHHHH
Confidence 99999999999887765554 49999999999986 49999999999997 789998874
|
|
| >KOG0060 consensus Long-chain acyl-CoA transporter, ABC superfamily (involved in peroxisome organization and biogenesis) [Lipid transport and metabolism; General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.4e-30 Score=288.86 Aligned_cols=261 Identities=22% Similarity=0.277 Sum_probs=206.6
Q ss_pred CCccHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC--------CC------Ccccc---ccC
Q 037346 291 IPLESGMILSAL----TTFKILQEPIYYLPESISMMIQAKVPLDRIASFLCLE--------GL------QTDVL---EKM 349 (1156)
Q Consensus 291 ~~lt~~~~ft~l----~~~~~l~~pl~~l~~~~~~~~~a~~s~~Ri~~fl~~~--------~~------~~~~~---~~~ 349 (1156)
+.++++..+..+ .++..+...+..+...-..+.+-..-..||.++.+.- +. ..+.. ...
T Consensus 342 ~~~s~aEL~~~i~~na~~~i~Li~~f~~l~~~~~~ls~lsGyt~Ri~el~~~l~d~~~~~~~~~~~~~~~~E~~~~l~~~ 421 (659)
T KOG0060|consen 342 DDLSPAELSGLISNNAFVFIYLISAFGRLVDLSRDLSRLSGYTHRIGELMEVLDDLSSGSQECTMEEEELGEAEWGLSLP 421 (659)
T ss_pred CCcCHHHHHHHHhhhHHHHHHHHHHHHHHHHHhhhHHHhhhHHHHHHHHHHHHHHhccCCcchhhhhhhhhhhhhccCCC
Confidence 347777776654 3344455666666666666667677778888886421 00 00000 000
Q ss_pred C----CCCCCccEEEeeeEEEeCCCCCCCccccceEEeeCCeEEEEEcCCCCChHHHHHHHhCCCCCCCcEEEEc--C--
Q 037346 350 P----RGNSDTAIEIIDGSFSWDFSSPNPTLRNINLKVFHGMRVAVCGTVGSGKSSCLSCILGGVPKESGIIRLC--G-- 421 (1156)
Q Consensus 350 ~----~~~~~~~i~~~~~~f~~~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKSTll~~i~g~~~~~~G~i~~~--g-- 421 (1156)
+ ....+..|++++|++.-|++ +..+.+|+||+|+.|+.+.|+||||||||+|++.+.|+.+..+|++... |
T Consensus 422 ~G~~~~~~~Dn~i~~e~v~l~tPt~-g~~lie~Ls~~V~~g~~LLItG~sG~GKtSLlRvlggLWp~~~G~l~k~~~~~~ 500 (659)
T KOG0060|consen 422 PGSGKAEPADNAIEFEEVSLSTPTN-GDLLIENLSLEVPSGQNLLITGPSGCGKTSLLRVLGGLWPSTGGKLTKPTDGGP 500 (659)
T ss_pred CCCcccccccceEEeeeeeecCCCC-CceeeeeeeeEecCCCeEEEECCCCCchhHHHHHHhcccccCCCeEEecccCCC
Confidence 0 11235689999999999865 4567788999999999999999999999999999999999999999864 3
Q ss_pred -eEEEEecCCcCCCccHHHHhhcCC--------CCCHHHHHHHHHHhCCchhhhhCCCCCcc-ccccCCCCCCHHHHHHH
Q 037346 422 -TKAYVAQSPWIQSGKIEENILFGK--------EMDRERYERVLEACSLKKDLEVLPFGDQT-IIGERGINLSGGQKQRI 491 (1156)
Q Consensus 422 -~~~~v~Q~~~~~~~ti~eni~~~~--------~~~~~~~~~~~~~~~l~~~~~~~~~g~~t-~v~~~g~~LSgGqkqRi 491 (1156)
.+-|+||.|.+..||+||-+.+.. ..+++++.+.++.++|.+.++... |.++ .+-+-...||+||+||+
T Consensus 501 ~~lfflPQrPYmt~GTLRdQvIYP~~~~~~~~~~~~d~~i~r~Le~v~L~hl~~r~g-gld~~~~~dW~dvLS~GEqQRL 579 (659)
T KOG0060|consen 501 KDLFFLPQRPYMTLGTLRDQVIYPLKAEDMDSKSASDEDILRILENVQLGHLLEREG-GLDQQVDWDWMDVLSPGEQQRL 579 (659)
T ss_pred CceEEecCCCCccccchhheeeccCccccccccCCCHHHHHHHHHHhhhhhHHHHhC-CCCchhhccHHhhcCHHHHHHH
Confidence 378999999999999999999972 246788999999999988776654 5554 44566789999999999
Q ss_pred HHHHhhccCCCeeeeeCCCCCcCHHHHHHHHHHHHhcCCCEEEEEccCCCccccCCEEEEEeC
Q 037346 492 QIARPLYQDADIFLLDDPFSPVDDHTGAHLFKFCWVSSSKTVIYATHQVEFLPAADLILVIKD 554 (1156)
Q Consensus 492 ~lAral~~~~~illlDep~s~lD~~~~~~i~~~~~~~~~~tvi~vtH~~~~~~~~d~i~~l~~ 554 (1156)
|+||-+|++|++-+|||.|||||.+++..+++.|. ..|.|.|-|.||.++.+.-|.++-|+.
T Consensus 580 a~ARLfy~kPk~AiLDE~TSAv~~dvE~~~Yr~~r-~~giT~iSVgHRkSL~kfHd~~L~~~g 641 (659)
T KOG0060|consen 580 AFARLFYHKPKFAILDECTSAVTEDVEGALYRKCR-EMGITFISVGHRKSLWKFHDYVLRMDG 641 (659)
T ss_pred HHHHHHhcCCceEEeechhhhccHHHHHHHHHHHH-HcCCeEEEeccHHHHHhhhhEEEEecC
Confidence 99999999999999999999999999999998874 458999999999999998999999985
|
|
| >PRK11432 fbpC ferric transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-32 Score=315.73 Aligned_cols=195 Identities=23% Similarity=0.380 Sum_probs=171.9
Q ss_pred EEEEEEEEEEcCCCCceeeCCCCCCHHHHHHHHhhcccCCCceEEEcCeeCCCCChHHHhhcCeeeccccccccc-cchh
Q 037346 948 VNIRHLQVRYAPNLPLVLRGRTGSGKSTLIQTLFRIVESTAGHILIDGKDISLIGLHDLRTRLSIIPQDPTMFEG-TTRS 1026 (1156)
Q Consensus 948 I~~~~Vsf~Y~~~~~~vL~G~SGsGKSTL~~lL~rl~~p~~G~I~idG~di~~i~~~~LR~~i~~VpQdp~LF~g-TIr~ 1026 (1156)
..++|++|..++++.++|.||||||||||+++|.|+++|++|+|.+||.++.+.+.+ |+++++|+|++.||.. |+++
T Consensus 20 ~~l~~isl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~~~g~~i~~~~~~--~r~ig~vfQ~~~lfp~~tv~e 97 (351)
T PRK11432 20 TVIDNLNLTIKQGTMVTLLGPSGCGKTTVLRLVAGLEKPTEGQIFIDGEDVTHRSIQ--QRDICMVFQSYALFPHMSLGE 97 (351)
T ss_pred EEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHHCCCCCCceEEEECCEECCCCCHH--HCCEEEEeCCcccCCCCCHHH
Confidence 357888888888888899999999999999999999999999999999999987654 5789999999999975 9999
Q ss_pred ccCCCC---CCC----HHHHHHHHHHcCCChHHHhhcCCcccc-------ccccccCCCEEEEecCCcCCCHHHHHHHHH
Q 037346 1027 NLDPLE---EHA----DEQIWEALDKCQLGDEVRKKKGKLDSQ-------GRVLLKKSKVLVLDEATASVDTATDNQIQQ 1092 (1156)
Q Consensus 1027 Nl~~~~---~~~----deei~~al~~~~l~~~i~~lp~gl~s~-------ARALLr~~~ILiLDEaTS~LD~~te~~I~~ 1092 (1156)
|+.+.- ..+ ++++.++++.+++.++....|..|..+ ||||+++|+|||||||||+||+.+...+.+
T Consensus 98 Ni~~~l~~~~~~~~~~~~~v~~~l~~~gl~~~~~r~~~~LSgGq~QRVaLARaL~~~P~lLLLDEP~s~LD~~~r~~l~~ 177 (351)
T PRK11432 98 NVGYGLKMLGVPKEERKQRVKEALELVDLAGFEDRYVDQISGGQQQRVALARALILKPKVLLFDEPLSNLDANLRRSMRE 177 (351)
T ss_pred HHHHHHhHcCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEcCCcccCCHHHHHHHHH
Confidence 997531 112 457889999999998888888877655 899999999999999999999999999999
Q ss_pred HHHHhcC--CceEEEeecCccccc-ccCEEEEEeCcEEeeecChhHHhcCCCChH
Q 037346 1093 TLRQHFS--DCTVVTIAHRITSVL-DSAMVLLLNHGLIKEYDSPTKLLENKSSSF 1144 (1156)
Q Consensus 1093 ~l~~~~~--~~TvI~IaHrl~ti~-~~D~I~Vl~~G~IvE~G~~~eLl~~~~g~f 1144 (1156)
.|+++.+ +.|+|+|||+++.+. -||+|+||++|+|++.|+|+++..++...|
T Consensus 178 ~l~~l~~~~g~tii~vTHd~~e~~~laD~i~vm~~G~i~~~g~~~~~~~~p~~~~ 232 (351)
T PRK11432 178 KIRELQQQFNITSLYVTHDQSEAFAVSDTVIVMNKGKIMQIGSPQELYRQPASRF 232 (351)
T ss_pred HHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhCCCchH
Confidence 9988754 789999999999875 599999999999999999999998776544
|
|
| >cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-32 Score=305.05 Aligned_cols=200 Identities=26% Similarity=0.412 Sum_probs=174.2
Q ss_pred eEEEEEEEEEEcCCCCceeeCCCCCCHHHHHHHHhhcccCCCceEEEcCeeCCCCChHHH----hhcCeeecccccccc-
Q 037346 947 EVNIRHLQVRYAPNLPLVLRGRTGSGKSTLIQTLFRIVESTAGHILIDGKDISLIGLHDL----RTRLSIIPQDPTMFE- 1021 (1156)
Q Consensus 947 ~I~~~~Vsf~Y~~~~~~vL~G~SGsGKSTL~~lL~rl~~p~~G~I~idG~di~~i~~~~L----R~~i~~VpQdp~LF~- 1021 (1156)
...++|++|...+++.++|.|+||||||||+++|+|+++|++|+|.+||.++.+.+...+ +++++++||++.+|.
T Consensus 37 ~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~L~Gl~~p~~G~i~i~g~~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~ 116 (269)
T cd03294 37 TVGVNDVSLDVREGEIFVIMGLSGSGKSTLLRCINRLIEPTSGKVLIDGQDIAAMSRKELRELRRKKISMVFQSFALLPH 116 (269)
T ss_pred ceEeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEccccChhhhhhhhcCcEEEEecCcccCCC
Confidence 346999999999999999999999999999999999999999999999999988776554 467999999999885
Q ss_pred ccchhccCCC---CCC----CHHHHHHHHHHcCCChHHHhhcCCcccc-------ccccccCCCEEEEecCCcCCCHHHH
Q 037346 1022 GTTRSNLDPL---EEH----ADEQIWEALDKCQLGDEVRKKKGKLDSQ-------GRVLLKKSKVLVLDEATASVDTATD 1087 (1156)
Q Consensus 1022 gTIr~Nl~~~---~~~----~deei~~al~~~~l~~~i~~lp~gl~s~-------ARALLr~~~ILiLDEaTS~LD~~te 1087 (1156)
.|+++|+.+. ... .++++.++++.+++.+++...|..|..+ ||||+++|+||||||||++||+.+.
T Consensus 117 ~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Gq~qrv~lAral~~~p~illLDEPt~~LD~~~~ 196 (269)
T cd03294 117 RTVLENVAFGLEVQGVPRAEREERAAEALELVGLEGWEHKYPDELSGGMQQRVGLARALAVDPDILLMDEAFSALDPLIR 196 (269)
T ss_pred CcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHhHhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHH
Confidence 6999999642 111 1356889999999999888888888765 8999999999999999999999999
Q ss_pred HHHHHHHHHhcC--CceEEEeecCccccc-ccCEEEEEeCcEEeeecChhHHhcCCCChHHH
Q 037346 1088 NQIQQTLRQHFS--DCTVVTIAHRITSVL-DSAMVLLLNHGLIKEYDSPTKLLENKSSSFAQ 1146 (1156)
Q Consensus 1088 ~~I~~~l~~~~~--~~TvI~IaHrl~ti~-~~D~I~Vl~~G~IvE~G~~~eLl~~~~g~f~~ 1146 (1156)
+.+.+.|+++.+ ++|+|++||+++.+. -||+|++|++|++++.|+++++++++...|.+
T Consensus 197 ~~l~~~l~~~~~~~g~tiii~tH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~~~~~~~~ 258 (269)
T cd03294 197 REMQDELLRLQAELQKTIVFITHDLDEALRLGDRIAIMKDGRLVQVGTPEEILTNPANDYVR 258 (269)
T ss_pred HHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEECCEEEEeCCHHHHHhCcCcHHHH
Confidence 999999988743 789999999999875 59999999999999999999998765554543
|
This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-32 Score=298.43 Aligned_cols=192 Identities=32% Similarity=0.515 Sum_probs=173.6
Q ss_pred EEEEEEEEEEcCCCCceeeCCCCCCHHHHHHHHhhcccCCCceEEEcCeeCCCCChHHHhhcCeeeccccccccccchhc
Q 037346 948 VNIRHLQVRYAPNLPLVLRGRTGSGKSTLIQTLFRIVESTAGHILIDGKDISLIGLHDLRTRLSIIPQDPTMFEGTTRSN 1027 (1156)
Q Consensus 948 I~~~~Vsf~Y~~~~~~vL~G~SGsGKSTL~~lL~rl~~p~~G~I~idG~di~~i~~~~LR~~i~~VpQdp~LF~gTIr~N 1027 (1156)
..++|++|+.++++.++|.|+||||||||+++|+|+++|.+|+|.+||.++.+.+...+|++++|+||++.+|.+|+++|
T Consensus 17 ~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~tv~~~ 96 (229)
T cd03254 17 PVLKDINFSIKPGETVAIVGPTGAGKTTLINLLMRFYDPQKGQILIDGIDIRDISRKSLRSMIGVVLQDTFLFSGTIMEN 96 (229)
T ss_pred ccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCEeHHHcCHHHHhhhEEEecCCchhhhhHHHHH
Confidence 36888888888888888999999999999999999999999999999999998888889999999999999999999999
Q ss_pred cCCCCC-CCHHHHHHHHHHcCCChHHHhhcCCcccc------------------ccccccCCCEEEEecCCcCCCHHHHH
Q 037346 1028 LDPLEE-HADEQIWEALDKCQLGDEVRKKKGKLDSQ------------------GRVLLKKSKVLVLDEATASVDTATDN 1088 (1156)
Q Consensus 1028 l~~~~~-~~deei~~al~~~~l~~~i~~lp~gl~s~------------------ARALLr~~~ILiLDEaTS~LD~~te~ 1088 (1156)
+.+... ..++++.++++.+++.+++..+|.|+++. ||||+++|++|||||||++||+.+.+
T Consensus 97 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LS~G~~~rv~la~al~~~p~llllDEP~~~LD~~~~~ 176 (229)
T cd03254 97 IRLGRPNATDEEVIEAAKEAGAHDFIMKLPNGYDTVLGENGGNLSQGERQLLAIARAMLRDPKILILDEATSNIDTETEK 176 (229)
T ss_pred HhccCCCCCHHHHHHHHHHhChHHHHHhCcccccCHhhcCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHH
Confidence 986543 34677888899999988888877555421 89999999999999999999999999
Q ss_pred HHHHHHHHhcCCceEEEeecCcccccccCEEEEEeCcEEeeecChhHHhcC
Q 037346 1089 QIQQTLRQHFSDCTVVTIAHRITSVLDSAMVLLLNHGLIKEYDSPTKLLEN 1139 (1156)
Q Consensus 1089 ~I~~~l~~~~~~~TvI~IaHrl~ti~~~D~I~Vl~~G~IvE~G~~~eLl~~ 1139 (1156)
.+.+.|++..+++|+|+|||+++.+..||+|++|++|++++.|++++++++
T Consensus 177 ~l~~~l~~~~~~~tii~~sh~~~~~~~~d~i~~l~~g~~~~~~~~~~~~~~ 227 (229)
T cd03254 177 LIQEALEKLMKGRTSIIIAHRLSTIKNADKILVLDDGKIIEEGTHDELLAK 227 (229)
T ss_pred HHHHHHHHhcCCCEEEEEecCHHHHhhCCEEEEEeCCeEEEeCCHHHHHhh
Confidence 999999988778999999999999999999999999999999999888764
|
In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK10762 D-ribose transporter ATP binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-32 Score=333.18 Aligned_cols=193 Identities=20% Similarity=0.372 Sum_probs=160.1
Q ss_pred ccEEEeeeEEEeCCCCCCCccccceEEeeCCeEEEEEcCCCCChHHHHHHHhCCCCCCCcEEEEcC--------------
Q 037346 356 TAIEIIDGSFSWDFSSPNPTLRNINLKVFHGMRVAVCGTVGSGKSSCLSCILGGVPKESGIIRLCG-------------- 421 (1156)
Q Consensus 356 ~~i~~~~~~f~~~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKSTll~~i~g~~~~~~G~i~~~g-------------- 421 (1156)
..++++|+++ ++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|
T Consensus 256 ~~l~~~~l~~--------~~l~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~G~~~p~~G~I~~~g~~i~~~~~~~~~~~ 327 (501)
T PRK10762 256 VRLKVDNLSG--------PGVNDVSFTLRKGEILGVSGLMGAGRTELMKVLYGALPRTSGYVTLDGHEVVTRSPQDGLAN 327 (501)
T ss_pred cEEEEeCccc--------CCcccceEEEcCCcEEEEecCCCCCHHHHHHHHhCCCCCCceEEEECCEECCCCCHHHHHHC
Confidence 3589999873 369999999999999999999999999999999999999999999987
Q ss_pred eEEEEecCC---cCC-CccHHHHhhcCCC---------CC----HHHHHHHHHHhCCchhhhhCCCCCccccccCCCCCC
Q 037346 422 TKAYVAQSP---WIQ-SGKIEENILFGKE---------MD----RERYERVLEACSLKKDLEVLPFGDQTIIGERGINLS 484 (1156)
Q Consensus 422 ~~~~v~Q~~---~~~-~~ti~eni~~~~~---------~~----~~~~~~~~~~~~l~~~~~~~~~g~~t~v~~~g~~LS 484 (1156)
.++|++|+| .++ ..|++||+.++.. .+ +++.+++++.+++... ...+...+||
T Consensus 328 ~i~~v~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~----------~~~~~~~~LS 397 (501)
T PRK10762 328 GIVYISEDRKRDGLVLGMSVKENMSLTALRYFSRAGGSLKHADEQQAVSDFIRLFNIKTP----------SMEQAIGLLS 397 (501)
T ss_pred CCEEecCccccCCCcCCCcHHHHhhhhhhhhhcccccccCHHHHHHHHHHHHHhcCCCCC----------CccCchhhCC
Confidence 279999997 344 4699999987421 11 1234556666665311 1234567899
Q ss_pred HHHHHHHHHHHhhccCCCeeeeeCCCCCcCHHHHHHHHHHHHh--cCCCEEEEEccCCCccc-cCCEEEEEeCCeEEEcc
Q 037346 485 GGQKQRIQIARPLYQDADIFLLDDPFSPVDDHTGAHLFKFCWV--SSSKTVIYATHQVEFLP-AADLILVIKDGKITQAG 561 (1156)
Q Consensus 485 gGqkqRi~lAral~~~~~illlDep~s~lD~~~~~~i~~~~~~--~~~~tvi~vtH~~~~~~-~~d~i~~l~~G~i~~~g 561 (1156)
||||||++||||++.+|++|||||||++||+.+++.+.+.+.. .+|+|+|++||+++.+. .||+|++|++|+++..|
T Consensus 398 gGekqrv~lA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tviivtHd~~~~~~~~d~v~~l~~G~i~~~~ 477 (501)
T PRK10762 398 GGNQQKVAIARGLMTRPKVLILDEPTRGVDVGAKKEIYQLINQFKAEGLSIILVSSEMPEVLGMSDRILVMHEGRISGEF 477 (501)
T ss_pred HHHHHHHHHHHHHhhCCCEEEEcCCCCCCCHhHHHHHHHHHHHHHHCCCEEEEEcCCHHHHHhhCCEEEEEECCEEEEEe
Confidence 9999999999999999999999999999999999998876644 35889999999999875 59999999999999988
Q ss_pred ChHHH
Q 037346 562 KYSDI 566 (1156)
Q Consensus 562 ~~~~l 566 (1156)
+.+++
T Consensus 478 ~~~~~ 482 (501)
T PRK10762 478 TREQA 482 (501)
T ss_pred ccccC
Confidence 87654
|
|
| >PRK11153 metN DL-methionine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-32 Score=315.08 Aligned_cols=199 Identities=23% Similarity=0.355 Sum_probs=174.1
Q ss_pred eEEEEEEEEEEcCCCCceeeCCCCCCHHHHHHHHhhcccCCCceEEEcCeeCCCCChHH---HhhcCeeecccccccc-c
Q 037346 947 EVNIRHLQVRYAPNLPLVLRGRTGSGKSTLIQTLFRIVESTAGHILIDGKDISLIGLHD---LRTRLSIIPQDPTMFE-G 1022 (1156)
Q Consensus 947 ~I~~~~Vsf~Y~~~~~~vL~G~SGsGKSTL~~lL~rl~~p~~G~I~idG~di~~i~~~~---LR~~i~~VpQdp~LF~-g 1022 (1156)
...++|++|...+++.++|.|+||||||||+++|+|+++|++|+|.+||.++..++..+ +|++|+||||++.+|. .
T Consensus 18 ~~il~~vsl~i~~Gei~~iiG~nGsGKSTLlk~L~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~~~~ig~v~q~~~l~~~~ 97 (343)
T PRK11153 18 IHALNNVSLHIPAGEIFGVIGASGAGKSTLIRCINLLERPTSGRVLVDGQDLTALSEKELRKARRQIGMIFQHFNLLSSR 97 (343)
T ss_pred eEEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCcCCHHHHHHHhcCEEEEeCCCccCCCC
Confidence 35799999999999999999999999999999999999999999999999999887654 4789999999999986 6
Q ss_pred cchhccCCCC---CCC----HHHHHHHHHHcCCChHHHhhcCCcccc-------ccccccCCCEEEEecCCcCCCHHHHH
Q 037346 1023 TTRSNLDPLE---EHA----DEQIWEALDKCQLGDEVRKKKGKLDSQ-------GRVLLKKSKVLVLDEATASVDTATDN 1088 (1156)
Q Consensus 1023 TIr~Nl~~~~---~~~----deei~~al~~~~l~~~i~~lp~gl~s~-------ARALLr~~~ILiLDEaTS~LD~~te~ 1088 (1156)
|+++|+.+.. ..+ ++++.++++.+++.++....|..|..+ ||||+++|+||||||||++||+.+..
T Consensus 98 tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGq~qRv~lAraL~~~p~iLlLDEPts~LD~~~~~ 177 (343)
T PRK11153 98 TVFDNVALPLELAGTPKAEIKARVTELLELVGLSDKADRYPAQLSGGQKQRVAIARALASNPKVLLCDEATSALDPATTR 177 (343)
T ss_pred cHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHH
Confidence 9999996421 122 346788999999998888777777655 89999999999999999999999999
Q ss_pred HHHHHHHHhcC--CceEEEeecCcccccc-cCEEEEEeCcEEeeecChhHHhcCCCChHH
Q 037346 1089 QIQQTLRQHFS--DCTVVTIAHRITSVLD-SAMVLLLNHGLIKEYDSPTKLLENKSSSFA 1145 (1156)
Q Consensus 1089 ~I~~~l~~~~~--~~TvI~IaHrl~ti~~-~D~I~Vl~~G~IvE~G~~~eLl~~~~g~f~ 1145 (1156)
.+.+.|+++.+ ++|+|+|||+++.+.. ||+|++|++|++++.|++++++.++...+.
T Consensus 178 ~l~~~L~~l~~~~g~tiilvtH~~~~i~~~~d~v~~l~~G~i~~~g~~~~~~~~~~~~~~ 237 (343)
T PRK11153 178 SILELLKDINRELGLTIVLITHEMDVVKRICDRVAVIDAGRLVEQGTVSEVFSHPKHPLT 237 (343)
T ss_pred HHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhCCCcHHH
Confidence 99999998753 7899999999999875 999999999999999999999876544333
|
|
| >PRK11650 ugpC glycerol-3-phosphate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-32 Score=313.92 Aligned_cols=196 Identities=21% Similarity=0.357 Sum_probs=173.1
Q ss_pred EEEEEEEEEEcCCCCceeeCCCCCCHHHHHHHHhhcccCCCceEEEcCeeCCCCChHHHhhcCeeecccccccc-ccchh
Q 037346 948 VNIRHLQVRYAPNLPLVLRGRTGSGKSTLIQTLFRIVESTAGHILIDGKDISLIGLHDLRTRLSIIPQDPTMFE-GTTRS 1026 (1156)
Q Consensus 948 I~~~~Vsf~Y~~~~~~vL~G~SGsGKSTL~~lL~rl~~p~~G~I~idG~di~~i~~~~LR~~i~~VpQdp~LF~-gTIr~ 1026 (1156)
-.++|++|...+++.++|.||||||||||+++|+|+.+|++|+|.+||.++.+++.. ++.|+||||++.+|. .|+++
T Consensus 18 ~~l~~vsl~i~~Ge~~~llG~sGsGKSTLLr~iaGl~~p~~G~I~~~g~~i~~~~~~--~r~ig~v~Q~~~lfp~~tv~e 95 (356)
T PRK11650 18 QVIKGIDLDVADGEFIVLVGPSGCGKSTLLRMVAGLERITSGEIWIGGRVVNELEPA--DRDIAMVFQNYALYPHMSVRE 95 (356)
T ss_pred EEEeeeeEEEcCCCEEEEECCCCCcHHHHHHHHHCCCCCCceEEEECCEECCCCCHH--HCCEEEEeCCccccCCCCHHH
Confidence 478899999998988899999999999999999999999999999999999988765 478999999999996 59999
Q ss_pred ccCCCCC---CC----HHHHHHHHHHcCCChHHHhhcCCcccc-------ccccccCCCEEEEecCCcCCCHHHHHHHHH
Q 037346 1027 NLDPLEE---HA----DEQIWEALDKCQLGDEVRKKKGKLDSQ-------GRVLLKKSKVLVLDEATASVDTATDNQIQQ 1092 (1156)
Q Consensus 1027 Nl~~~~~---~~----deei~~al~~~~l~~~i~~lp~gl~s~-------ARALLr~~~ILiLDEaTS~LD~~te~~I~~ 1092 (1156)
||.+.-. .+ ++++.++++.+++.++....|..|..+ ||||+++|+|||||||||+||+.+.+.+.+
T Consensus 96 Ni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGq~QRvalARAL~~~P~llLLDEP~s~LD~~~r~~l~~ 175 (356)
T PRK11650 96 NMAYGLKIRGMPKAEIEERVAEAARILELEPLLDRKPRELSGGQRQRVAMGRAIVREPAVFLFDEPLSNLDAKLRVQMRL 175 (356)
T ss_pred HHHhHHhhcCCCHHHHHHHHHHHHHHcCChhHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHH
Confidence 9975321 22 356789999999999998888888765 899999999999999999999999999999
Q ss_pred HHHHhcC--CceEEEeecCccccc-ccCEEEEEeCcEEeeecChhHHhcCCCChHH
Q 037346 1093 TLRQHFS--DCTVVTIAHRITSVL-DSAMVLLLNHGLIKEYDSPTKLLENKSSSFA 1145 (1156)
Q Consensus 1093 ~l~~~~~--~~TvI~IaHrl~ti~-~~D~I~Vl~~G~IvE~G~~~eLl~~~~g~f~ 1145 (1156)
.|++..+ +.|+|+|||+++.+. -||+|++|++|+|++.|+|++++.++...|.
T Consensus 176 ~l~~l~~~~g~tii~vTHd~~ea~~l~D~i~vl~~G~i~~~g~~~~~~~~p~~~~~ 231 (356)
T PRK11650 176 EIQRLHRRLKTTSLYVTHDQVEAMTLADRVVVMNGGVAEQIGTPVEVYEKPASTFV 231 (356)
T ss_pred HHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeCCEEEEECCHHHHHhCCccHHH
Confidence 9988654 789999999998765 5999999999999999999999987655443
|
|
| >TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=99.98 E-value=1.6e-32 Score=315.10 Aligned_cols=200 Identities=21% Similarity=0.304 Sum_probs=174.0
Q ss_pred CeEEEEEEEEEEcCCCCceeeCCCCCCHHHHHHHHhhcccCCCceEEEcCe----eCCCCChHHHh----hcCeeecccc
Q 037346 946 GEVNIRHLQVRYAPNLPLVLRGRTGSGKSTLIQTLFRIVESTAGHILIDGK----DISLIGLHDLR----TRLSIIPQDP 1017 (1156)
Q Consensus 946 g~I~~~~Vsf~Y~~~~~~vL~G~SGsGKSTL~~lL~rl~~p~~G~I~idG~----di~~i~~~~LR----~~i~~VpQdp 1017 (1156)
+...++|+||...+++.++|.|+||||||||+++|.|+++|++|+|++||. ++...+.+.+| ++|+||+|++
T Consensus 36 ~~~~l~~vsf~i~~Gei~~I~G~nGsGKSTLlr~L~Gl~~p~~G~I~idG~~~~~~i~~~~~~~l~~~r~~~i~~vfQ~~ 115 (382)
T TIGR03415 36 LVVGVANASLDIEEGEICVLMGLSGSGKSSLLRAVNGLNPVSRGSVLVKDGDGSIDVANCDAATLRRLRTHRVSMVFQKF 115 (382)
T ss_pred CEEEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEECCEecccccccCCHHHHHHHhcCCEEEEECCC
Confidence 456899999999999999999999999999999999999999999999996 67777766553 5799999999
Q ss_pred cccc-ccchhccCCCC---CCC----HHHHHHHHHHcCCChHHHhhcCCcccc-------ccccccCCCEEEEecCCcCC
Q 037346 1018 TMFE-GTTRSNLDPLE---EHA----DEQIWEALDKCQLGDEVRKKKGKLDSQ-------GRVLLKKSKVLVLDEATASV 1082 (1156)
Q Consensus 1018 ~LF~-gTIr~Nl~~~~---~~~----deei~~al~~~~l~~~i~~lp~gl~s~-------ARALLr~~~ILiLDEaTS~L 1082 (1156)
.+|. .|+++|+.++. ... .+.+.++++.++|.++....|..|..+ ||||+++|+|||||||||+|
T Consensus 116 ~l~p~~Tv~eNi~~~~~~~g~~~~~~~~~a~e~le~vgL~~~~~~~~~~LSgGq~QRV~LARALa~~P~ILLlDEPts~L 195 (382)
T TIGR03415 116 ALMPWLTVEENVAFGLEMQGMPEAERRKRVDEQLELVGLAQWADKKPGELSGGMQQRVGLARAFAMDADILLMDEPFSAL 195 (382)
T ss_pred cCCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEECCCccC
Confidence 9997 69999997431 112 245789999999998888877777655 89999999999999999999
Q ss_pred CHHHHHHHHHHHHHhcC--CceEEEeecCcccc-cccCEEEEEeCcEEeeecChhHHhcCCCChHH
Q 037346 1083 DTATDNQIQQTLRQHFS--DCTVVTIAHRITSV-LDSAMVLLLNHGLIKEYDSPTKLLENKSSSFA 1145 (1156)
Q Consensus 1083 D~~te~~I~~~l~~~~~--~~TvI~IaHrl~ti-~~~D~I~Vl~~G~IvE~G~~~eLl~~~~g~f~ 1145 (1156)
|+.+...+++.|.++.+ ++|+|+|||+++.+ ..||+|++|++|++++.|++++++.++...|.
T Consensus 196 D~~~r~~l~~~L~~l~~~~~~TII~iTHdl~e~~~l~DrI~vl~~G~iv~~g~~~ei~~~p~~~~~ 261 (382)
T TIGR03415 196 DPLIRTQLQDELLELQAKLNKTIIFVSHDLDEALKIGNRIAIMEGGRIIQHGTPEEIVLNPANDYV 261 (382)
T ss_pred CHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEecCHHHHhhCcchHHH
Confidence 99999999999988753 78999999999987 55999999999999999999999976555444
|
Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines. |
| >PRK14269 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.98 E-value=3.8e-32 Score=299.35 Aligned_cols=195 Identities=22% Similarity=0.373 Sum_probs=169.6
Q ss_pred eEEEEEEEEEEcCCCCceeeCCCCCCHHHHHHHHhhccc---CCCceEEEcCeeCCCCChHHHhhcCeeecccccccccc
Q 037346 947 EVNIRHLQVRYAPNLPLVLRGRTGSGKSTLIQTLFRIVE---STAGHILIDGKDISLIGLHDLRTRLSIIPQDPTMFEGT 1023 (1156)
Q Consensus 947 ~I~~~~Vsf~Y~~~~~~vL~G~SGsGKSTL~~lL~rl~~---p~~G~I~idG~di~~i~~~~LR~~i~~VpQdp~LF~gT 1023 (1156)
...++|++|...+++.++|.|+||||||||+++|+|+++ |++|+|.+||.++.+.+...+|+.++|+||+|.+|..|
T Consensus 15 ~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~G~i~~~g~~i~~~~~~~~~~~i~~~~q~~~l~~~t 94 (246)
T PRK14269 15 KQALFDINMQIEQNKITALIGASGCGKSTFLRCFNRMNDKIAKIDGLVEIEGKDVKNQDVVALRKNVGMVFQQPNVFVKS 94 (246)
T ss_pred EeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCCceEEEECCEecccCCHHHHhhhEEEEecCCcccccc
Confidence 347899999999999999999999999999999999985 69999999999999988888999999999999999999
Q ss_pred chhccCCCC---C------CCHHHHHHHHHHcCCChHHHh----hcCCcccc-------ccccccCCCEEEEecCCcCCC
Q 037346 1024 TRSNLDPLE---E------HADEQIWEALDKCQLGDEVRK----KKGKLDSQ-------GRVLLKKSKVLVLDEATASVD 1083 (1156)
Q Consensus 1024 Ir~Nl~~~~---~------~~deei~~al~~~~l~~~i~~----lp~gl~s~-------ARALLr~~~ILiLDEaTS~LD 1083 (1156)
+++|+.++. . ..++++.++++.+++.+++.. .+..|..+ ||||+++|+||||||||++||
T Consensus 95 v~eni~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~laral~~~p~lllLDEP~~~LD 174 (246)
T PRK14269 95 IYENISYAPKLHGMIKNKDEEEALVVDCLQKVGLFEEVKDKLKQNALALSGGQQQRLCIARALAIKPKLLLLDEPTSALD 174 (246)
T ss_pred HHHHhhhHHhhcCcccChHHHHHHHHHHHHHcCCChhhhHHhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCC
Confidence 999997531 1 123467889999999765432 23334433 899999999999999999999
Q ss_pred HHHHHHHHHHHHHhcCCceEEEeecCccccc-ccCEEEEEeCcEEeeecChhHHhcCCC
Q 037346 1084 TATDNQIQQTLRQHFSDCTVVTIAHRITSVL-DSAMVLLLNHGLIKEYDSPTKLLENKS 1141 (1156)
Q Consensus 1084 ~~te~~I~~~l~~~~~~~TvI~IaHrl~ti~-~~D~I~Vl~~G~IvE~G~~~eLl~~~~ 1141 (1156)
+.+...+.+.|++..+++|+|+|||+++.+. .||+|++|++|++++.|+++++...+.
T Consensus 175 ~~~~~~l~~~l~~~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~~~ 233 (246)
T PRK14269 175 PISSGVIEELLKELSHNLSMIMVTHNMQQGKRVADYTAFFHLGELIEFGESKEFFENPK 233 (246)
T ss_pred HHHHHHHHHHHHHHhCCCEEEEEecCHHHHHhhCcEEEEEECCEEEEECCHHHHHhCCC
Confidence 9999999999998877899999999999875 599999999999999999999986543
|
|
| >PRK13647 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.98 E-value=1.5e-32 Score=306.72 Aligned_cols=190 Identities=22% Similarity=0.284 Sum_probs=170.4
Q ss_pred EEEEEEEEEEcCCCCceeeCCCCCCHHHHHHHHhhcccCCCceEEEcCeeCCCCChHHHhhcCeeecccc--ccccccch
Q 037346 948 VNIRHLQVRYAPNLPLVLRGRTGSGKSTLIQTLFRIVESTAGHILIDGKDISLIGLHDLRTRLSIIPQDP--TMFEGTTR 1025 (1156)
Q Consensus 948 I~~~~Vsf~Y~~~~~~vL~G~SGsGKSTL~~lL~rl~~p~~G~I~idG~di~~i~~~~LR~~i~~VpQdp--~LF~gTIr 1025 (1156)
-.++|++|...+|+.++|.|+||||||||+++|.|+++|++|+|.+||.++.+.+...+|++++||||+| .+|..|++
T Consensus 19 ~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~~tv~ 98 (274)
T PRK13647 19 KALKGLSLSIPEGSKTALLGPNGAGKSTLLLHLNGIYLPQRGRVKVMGREVNAENEKWVRSKVGLVFQDPDDQVFSSTVW 98 (274)
T ss_pred eeeeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCceEEEECCEECCCCCHHHHHhhEEEEecChhhhhccCcHH
Confidence 4789999999999999999999999999999999999999999999999999888888999999999998 68889999
Q ss_pred hccCCCCC---CC----HHHHHHHHHHcCCChHHHhhcCCcccc-------ccccccCCCEEEEecCCcCCCHHHHHHHH
Q 037346 1026 SNLDPLEE---HA----DEQIWEALDKCQLGDEVRKKKGKLDSQ-------GRVLLKKSKVLVLDEATASVDTATDNQIQ 1091 (1156)
Q Consensus 1026 ~Nl~~~~~---~~----deei~~al~~~~l~~~i~~lp~gl~s~-------ARALLr~~~ILiLDEaTS~LD~~te~~I~ 1091 (1156)
+|+.+... .. ++++.++++.+++.+.....|..|..+ ||||+++|++|||||||++||+.+...+.
T Consensus 99 e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgG~~qrv~laraL~~~p~llllDEPt~~LD~~~~~~l~ 178 (274)
T PRK13647 99 DDVAFGPVNMGLDKDEVERRVEEALKAVRMWDFRDKPPYHLSYGQKKRVAIAGVLAMDPDVIVLDEPMAYLDPRGQETLM 178 (274)
T ss_pred HHHHhhHHHcCCCHHHHHHHHHHHHHHCCCHHHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEECCCcCCCHHHHHHHH
Confidence 99975321 11 356889999999998888888877755 89999999999999999999999999999
Q ss_pred HHHHHhc-CCceEEEeecCccccc-ccCEEEEEeCcEEeeecChhHHh
Q 037346 1092 QTLRQHF-SDCTVVTIAHRITSVL-DSAMVLLLNHGLIKEYDSPTKLL 1137 (1156)
Q Consensus 1092 ~~l~~~~-~~~TvI~IaHrl~ti~-~~D~I~Vl~~G~IvE~G~~~eLl 1137 (1156)
+.|++.. +++|+|+|||+++.+. .||+|++|++|++++.|+++++.
T Consensus 179 ~~l~~~~~~g~tili~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~ 226 (274)
T PRK13647 179 EILDRLHNQGKTVIVATHDVDLAAEWADQVIVLKEGRVLAEGDKSLLT 226 (274)
T ss_pred HHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHhc
Confidence 9998874 4789999999999984 59999999999999999987643
|
|
| >PLN03073 ABC transporter F family; Provisional | Back alignment and domain information |
|---|
Probab=99.98 E-value=6.9e-32 Score=334.52 Aligned_cols=198 Identities=24% Similarity=0.339 Sum_probs=164.1
Q ss_pred ccEEEeeeEEEeCCCCCCCccccceEEeeCCeEEEEEcCCCCChHHHHHHHhCCCCCCCcEEEEcC--eEEEEecCCcCC
Q 037346 356 TAIEIIDGSFSWDFSSPNPTLRNINLKVFHGMRVAVCGTVGSGKSSCLSCILGGVPKESGIIRLCG--TKAYVAQSPWIQ 433 (1156)
Q Consensus 356 ~~i~~~~~~f~~~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKSTll~~i~g~~~~~~G~i~~~g--~~~~v~Q~~~~~ 433 (1156)
..++++|+++.|+. ..++|+|+||+|++|++++|+||||||||||+++|+|+++|++|+|.+++ +++|++|++. .
T Consensus 507 ~~L~~~~ls~~y~~--~~~il~~vsl~i~~Ge~i~LvG~NGsGKSTLLk~L~Gll~p~~G~I~~~~~~~igyv~Q~~~-~ 583 (718)
T PLN03073 507 PIISFSDASFGYPG--GPLLFKNLNFGIDLDSRIAMVGPNGIGKSTILKLISGELQPSSGTVFRSAKVRMAVFSQHHV-D 583 (718)
T ss_pred ceEEEEeeEEEeCC--CCeeEeccEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCceEEECCceeEEEEecccc-c
Confidence 46999999999952 34699999999999999999999999999999999999999999999986 5899999873 2
Q ss_pred CccHHHHhhc-----CCCCCHHHHHHHHHHhCCchhhhhCCCCCccccccCCCCCCHHHHHHHHHHHhhccCCCeeeeeC
Q 037346 434 SGKIEENILF-----GKEMDRERYERVLEACSLKKDLEVLPFGDQTIIGERGINLSGGQKQRIQIARPLYQDADIFLLDD 508 (1156)
Q Consensus 434 ~~ti~eni~~-----~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~t~v~~~g~~LSgGqkqRi~lAral~~~~~illlDe 508 (1156)
..++.+|..+ .....+++++++++.+++..+.. ...+.+||||||||++||||++.+|++|||||
T Consensus 584 ~l~~~~~~~~~~~~~~~~~~~~~i~~~L~~~gl~~~~~----------~~~~~~LSgGqkqRvaLAraL~~~p~lLLLDE 653 (718)
T PLN03073 584 GLDLSSNPLLYMMRCFPGVPEQKLRAHLGSFGVTGNLA----------LQPMYTLSGGQKSRVAFAKITFKKPHILLLDE 653 (718)
T ss_pred cCCcchhHHHHHHHhcCCCCHHHHHHHHHHCCCChHHh----------cCCccccCHHHHHHHHHHHHHhcCCCEEEEcC
Confidence 2345555321 11234667788888888864322 23457899999999999999999999999999
Q ss_pred CCCCcCHHHHHHHHHHHHhcCCCEEEEEccCCCcccc-CCEEEEEeCCeEE-EccChHHHH
Q 037346 509 PFSPVDDHTGAHLFKFCWVSSSKTVIYATHQVEFLPA-ADLILVIKDGKIT-QAGKYSDIL 567 (1156)
Q Consensus 509 p~s~lD~~~~~~i~~~~~~~~~~tvi~vtH~~~~~~~-~d~i~~l~~G~i~-~~g~~~~l~ 567 (1156)
||++||+.+.+.+.+.+.... .|+|+|||+++++.. ||++++|++|+++ +.|+++++.
T Consensus 654 PT~~LD~~s~~~l~~~L~~~~-gtvIivSHd~~~i~~~~drv~~l~~G~i~~~~g~~~~~~ 713 (718)
T PLN03073 654 PSNHLDLDAVEALIQGLVLFQ-GGVLMVSHDEHLISGSVDELWVVSEGKVTPFHGTFHDYK 713 (718)
T ss_pred CCCCCCHHHHHHHHHHHHHcC-CEEEEEECCHHHHHHhCCEEEEEECCEEEEeCCCHHHHH
Confidence 999999999998877654444 499999999999874 9999999999998 788887654
|
|
| >PRK13635 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.98 E-value=2.4e-32 Score=305.64 Aligned_cols=192 Identities=23% Similarity=0.358 Sum_probs=172.4
Q ss_pred EEEEEEEEEEcCCCCceeeCCCCCCHHHHHHHHhhcccCCCceEEEcCeeCCCCChHHHhhcCeeecccc--ccccccch
Q 037346 948 VNIRHLQVRYAPNLPLVLRGRTGSGKSTLIQTLFRIVESTAGHILIDGKDISLIGLHDLRTRLSIIPQDP--TMFEGTTR 1025 (1156)
Q Consensus 948 I~~~~Vsf~Y~~~~~~vL~G~SGsGKSTL~~lL~rl~~p~~G~I~idG~di~~i~~~~LR~~i~~VpQdp--~LF~gTIr 1025 (1156)
..++||+|...+|+.++|.|+||||||||+++|+|+++|++|+|.+||.++.+.+...+|+.|+|+||+| .+++.|++
T Consensus 21 ~~l~~vsl~i~~Ge~~~i~G~nGaGKSTLl~~i~G~~~p~~G~i~~~g~~i~~~~~~~~~~~i~~~~q~~~~~~~~~tv~ 100 (279)
T PRK13635 21 YALKDVSFSVYEGEWVAIVGHNGSGKSTLAKLLNGLLLPEAGTITVGGMVLSEETVWDVRRQVGMVFQNPDNQFVGATVQ 100 (279)
T ss_pred cceeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEECCcCcHHHHhhheEEEEeCHHHhcccccHH
Confidence 4788888888888888999999999999999999999999999999999999888888899999999998 46678999
Q ss_pred hccCCCC---CCC----HHHHHHHHHHcCCChHHHhhcCCcccc-------ccccccCCCEEEEecCCcCCCHHHHHHHH
Q 037346 1026 SNLDPLE---EHA----DEQIWEALDKCQLGDEVRKKKGKLDSQ-------GRVLLKKSKVLVLDEATASVDTATDNQIQ 1091 (1156)
Q Consensus 1026 ~Nl~~~~---~~~----deei~~al~~~~l~~~i~~lp~gl~s~-------ARALLr~~~ILiLDEaTS~LD~~te~~I~ 1091 (1156)
+||.+.. ..+ ++++.++++.++|.+++...|..|..+ ||||+.+|+||||||||++||+.+...+.
T Consensus 101 enl~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LS~G~~qrv~laral~~~p~lllLDEPt~gLD~~~~~~l~ 180 (279)
T PRK13635 101 DDVAFGLENIGVPREEMVERVDQALRQVGMEDFLNREPHRLSGGQKQRVAIAGVLALQPDIIILDEATSMLDPRGRREVL 180 (279)
T ss_pred HHHhhhHhhCCCCHHHHHHHHHHHHHHcCChhhhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHH
Confidence 9997531 112 345888999999999999888888765 89999999999999999999999999999
Q ss_pred HHHHHhcC--CceEEEeecCcccccccCEEEEEeCcEEeeecChhHHhcC
Q 037346 1092 QTLRQHFS--DCTVVTIAHRITSVLDSAMVLLLNHGLIKEYDSPTKLLEN 1139 (1156)
Q Consensus 1092 ~~l~~~~~--~~TvI~IaHrl~ti~~~D~I~Vl~~G~IvE~G~~~eLl~~ 1139 (1156)
+.|+++.+ ++|+|+|||+++.+..||+|++|++|++++.|+++++.+.
T Consensus 181 ~~l~~l~~~~~~tilivsH~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~ 230 (279)
T PRK13635 181 ETVRQLKEQKGITVLSITHDLDEAAQADRVIVMNKGEILEEGTPEEIFKS 230 (279)
T ss_pred HHHHHHHHcCCCEEEEEecCHHHHHcCCEEEEEECCEEEEECCHHHHhcC
Confidence 99998764 7899999999999999999999999999999999988753
|
|
| >TIGR00972 3a0107s01c2 phosphate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=99.98 E-value=3.9e-32 Score=299.59 Aligned_cols=197 Identities=25% Similarity=0.389 Sum_probs=170.4
Q ss_pred EEEEEEEEEEcCCCCceeeCCCCCCHHHHHHHHhhcccCC-----CceEEEcCeeCCCC--ChHHHhhcCeeeccccccc
Q 037346 948 VNIRHLQVRYAPNLPLVLRGRTGSGKSTLIQTLFRIVEST-----AGHILIDGKDISLI--GLHDLRTRLSIIPQDPTMF 1020 (1156)
Q Consensus 948 I~~~~Vsf~Y~~~~~~vL~G~SGsGKSTL~~lL~rl~~p~-----~G~I~idG~di~~i--~~~~LR~~i~~VpQdp~LF 1020 (1156)
..++||+|..++++.++|.|+||||||||+++|.|+++|+ +|+|.+||.++... +...+|+.++||||++.+|
T Consensus 15 ~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~v~q~~~~~ 94 (247)
T TIGR00972 15 EALKNINLDIPKNQVTALIGPSGCGKSTLLRSLNRMNDLVPGVRIEGKVLFDGQDIYDKKIDVVELRRRVGMVFQKPNPF 94 (247)
T ss_pred eeecceeEEECCCCEEEEECCCCCCHHHHHHHHhccCCCCcCCCCceEEEECCEEccccccchHHHHhheEEEecCcccC
Confidence 3689999999999989999999999999999999999998 99999999999763 4567789999999999999
Q ss_pred cccchhccCCC---CC-CC----HHHHHHHHHHcCCC----hHHHhhcCCcccc-------ccccccCCCEEEEecCCcC
Q 037346 1021 EGTTRSNLDPL---EE-HA----DEQIWEALDKCQLG----DEVRKKKGKLDSQ-------GRVLLKKSKVLVLDEATAS 1081 (1156)
Q Consensus 1021 ~gTIr~Nl~~~---~~-~~----deei~~al~~~~l~----~~i~~lp~gl~s~-------ARALLr~~~ILiLDEaTS~ 1081 (1156)
..|+++|+.+. .. .. ++++.++++.+++. +.....+..|..+ ||||+++|++|||||||++
T Consensus 95 ~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgG~~qrv~laral~~~p~llllDEPt~~ 174 (247)
T TIGR00972 95 PMSIYDNIAYGPRLHGIKDKKELDEIVEESLKKAALWDEVKDRLHDSALGLSGGQQQRLCIARALAVEPEVLLLDEPTSA 174 (247)
T ss_pred CCCHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCCcchhhHhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCccc
Confidence 99999999642 11 11 35678899999998 5555555666544 8999999999999999999
Q ss_pred CCHHHHHHHHHHHHHhcCCceEEEeecCccccc-ccCEEEEEeCcEEeeecChhHHhcCCCChH
Q 037346 1082 VDTATDNQIQQTLRQHFSDCTVVTIAHRITSVL-DSAMVLLLNHGLIKEYDSPTKLLENKSSSF 1144 (1156)
Q Consensus 1082 LD~~te~~I~~~l~~~~~~~TvI~IaHrl~ti~-~~D~I~Vl~~G~IvE~G~~~eLl~~~~g~f 1144 (1156)
||+.+...+.+.|++..+++|+|+|+|+++.+. -||+|++|++|++++.|++++++.++...+
T Consensus 175 LD~~~~~~l~~~l~~~~~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~~~~~~ 238 (247)
T TIGR00972 175 LDPIATGKIEELIQELKKKYTIVIVTHNMQQAARISDRTAFFYDGELVEYGPTEQIFTNPKEKR 238 (247)
T ss_pred CCHHHHHHHHHHHHHHHhcCeEEEEecCHHHHHHhCCEEEEEECCEEEEeCCHHHHHhCCCChH
Confidence 999999999999998876789999999999876 499999999999999999999987554444
|
This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters. |
| >cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine | Back alignment and domain information |
|---|
Probab=99.98 E-value=2.3e-32 Score=299.64 Aligned_cols=192 Identities=26% Similarity=0.399 Sum_probs=168.0
Q ss_pred EEEEEEEEEEcCCCCceeeCCCCCCHHHHHHHHhhcccCCCceEEEcCeeCCCCChHHH-hhcCeeeccccccccc-cch
Q 037346 948 VNIRHLQVRYAPNLPLVLRGRTGSGKSTLIQTLFRIVESTAGHILIDGKDISLIGLHDL-RTRLSIIPQDPTMFEG-TTR 1025 (1156)
Q Consensus 948 I~~~~Vsf~Y~~~~~~vL~G~SGsGKSTL~~lL~rl~~p~~G~I~idG~di~~i~~~~L-R~~i~~VpQdp~LF~g-TIr 1025 (1156)
..++|++|+..+++.++|.|+||||||||+++|+|+++|++|+|.+||.++.+.+...+ |+.+++|||++.+|.+ |++
T Consensus 14 ~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~l~~~~tv~ 93 (236)
T cd03219 14 VALDDVSFSVRPGEIHGLIGPNGAGKTTLFNLISGFLRPTSGSVLFDGEDITGLPPHEIARLGIGRTFQIPRLFPELTVL 93 (236)
T ss_pred EEecCceEEecCCcEEEEECCCCCCHHHHHHHHcCCCCCCCceEEECCEECCCCCHHHHHhcCEEEEecccccccCCCHH
Confidence 47899999999999999999999999999999999999999999999999998887664 5679999999999987 999
Q ss_pred hccCCCC----CC-------------CHHHHHHHHHHcCCChHHHhhcCCcccc-------ccccccCCCEEEEecCCcC
Q 037346 1026 SNLDPLE----EH-------------ADEQIWEALDKCQLGDEVRKKKGKLDSQ-------GRVLLKKSKVLVLDEATAS 1081 (1156)
Q Consensus 1026 ~Nl~~~~----~~-------------~deei~~al~~~~l~~~i~~lp~gl~s~-------ARALLr~~~ILiLDEaTS~ 1081 (1156)
+|+.+.. .. ..+.+.++++..++.+.....+..|..+ ||||+++|++|||||||++
T Consensus 94 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~llllDEPt~~ 173 (236)
T cd03219 94 ENVMVAAQARTGSGLLLARARREEREARERAEELLERVGLADLADRPAGELSYGQQRRLEIARALATDPKLLLLDEPAAG 173 (236)
T ss_pred HHHHHHHhhccccccccccccccHHHHHHHHHHHHHHcCccchhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCccc
Confidence 9986421 10 1335788999999987776666666544 8999999999999999999
Q ss_pred CCHHHHHHHHHHHHHhc-CCceEEEeecCcccccc-cCEEEEEeCcEEeeecChhHHhcC
Q 037346 1082 VDTATDNQIQQTLRQHF-SDCTVVTIAHRITSVLD-SAMVLLLNHGLIKEYDSPTKLLEN 1139 (1156)
Q Consensus 1082 LD~~te~~I~~~l~~~~-~~~TvI~IaHrl~ti~~-~D~I~Vl~~G~IvE~G~~~eLl~~ 1139 (1156)
||+.+.+.+.+.|++.. +++|+|+|||+++.+.. ||+|++|++|+|++.|++++++.+
T Consensus 174 LD~~~~~~l~~~l~~~~~~~~tii~vsH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~ 233 (236)
T cd03219 174 LNPEETEELAELIRELRERGITVLLVEHDMDVVMSLADRVTVLDQGRVIAEGTPDEVRNN 233 (236)
T ss_pred CCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEEEEeCCEEEeecCHHHhccC
Confidence 99999999999998865 57899999999999865 999999999999999999998754
|
MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). |
| >PRK10070 glycine betaine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.98 E-value=3.3e-32 Score=314.90 Aligned_cols=198 Identities=24% Similarity=0.386 Sum_probs=174.3
Q ss_pred eEEEEEEEEEEcCCCCceeeCCCCCCHHHHHHHHhhcccCCCceEEEcCeeCCCCChHHH----hhcCeeecccccccc-
Q 037346 947 EVNIRHLQVRYAPNLPLVLRGRTGSGKSTLIQTLFRIVESTAGHILIDGKDISLIGLHDL----RTRLSIIPQDPTMFE- 1021 (1156)
Q Consensus 947 ~I~~~~Vsf~Y~~~~~~vL~G~SGsGKSTL~~lL~rl~~p~~G~I~idG~di~~i~~~~L----R~~i~~VpQdp~LF~- 1021 (1156)
.+.++|++|...+++.++|.|+||||||||+++|.|+++|++|+|.+||.|+.+++...+ |++++||||++.+|.
T Consensus 41 ~~~L~~isl~i~~Gei~~LvG~NGsGKSTLLr~I~Gl~~p~sG~I~i~G~~i~~~~~~~l~~~~~~~igyv~Q~~~l~~~ 120 (400)
T PRK10070 41 SLGVKDASLAIEEGEIFVIMGLSGSGKSTMVRLLNRLIEPTRGQVLIDGVDIAKISDAELREVRRKKIAMVFQSFALMPH 120 (400)
T ss_pred eEEEEeEEEEEcCCCEEEEECCCCchHHHHHHHHHcCCCCCCCEEEECCEECCcCCHHHHHHHHhCCEEEEECCCcCCCC
Confidence 457999999999999999999999999999999999999999999999999998887654 357999999999996
Q ss_pred ccchhccCCCC---CCC----HHHHHHHHHHcCCChHHHhhcCCcccc-------ccccccCCCEEEEecCCcCCCHHHH
Q 037346 1022 GTTRSNLDPLE---EHA----DEQIWEALDKCQLGDEVRKKKGKLDSQ-------GRVLLKKSKVLVLDEATASVDTATD 1087 (1156)
Q Consensus 1022 gTIr~Nl~~~~---~~~----deei~~al~~~~l~~~i~~lp~gl~s~-------ARALLr~~~ILiLDEaTS~LD~~te 1087 (1156)
.|+++|+.+.. ... ++++.++++.+++.++....|..|..+ ||||+.+|+|||||||||+||+.+.
T Consensus 121 ~Tv~enl~~~~~~~~~~~~~~~~~~~e~L~~~gL~~~~~~~~~~LSgGq~QRv~LArAL~~~P~iLLLDEPts~LD~~~r 200 (400)
T PRK10070 121 MTVLDNTAFGMELAGINAEERREKALDALRQVGLENYAHSYPDELSGGMRQRVGLARALAINPDILLMDEAFSALDPLIR 200 (400)
T ss_pred CCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCChhhhcCcccCCHHHHHHHHHHHHHhcCCCEEEEECCCccCCHHHH
Confidence 49999997421 111 356889999999999888888877755 8999999999999999999999999
Q ss_pred HHHHHHHHHhc--CCceEEEeecCccccc-ccCEEEEEeCcEEeeecChhHHhcCCCChH
Q 037346 1088 NQIQQTLRQHF--SDCTVVTIAHRITSVL-DSAMVLLLNHGLIKEYDSPTKLLENKSSSF 1144 (1156)
Q Consensus 1088 ~~I~~~l~~~~--~~~TvI~IaHrl~ti~-~~D~I~Vl~~G~IvE~G~~~eLl~~~~g~f 1144 (1156)
+.+++.|+++. .++|+|+|||+++.+. .||+|++|++|+|++.|++++++.++...|
T Consensus 201 ~~l~~~L~~l~~~~g~TIIivTHd~~~~~~~~Dri~vL~~G~i~~~g~~~~l~~~~~~~~ 260 (400)
T PRK10070 201 TEMQDELVKLQAKHQRTIVFISHDLDEAMRIGDRIAIMQNGEVVQVGTPDEILNNPANDY 260 (400)
T ss_pred HHHHHHHHHHHHHCCCeEEEEECCHHHHHHhCCEEEEEECCEEEecCCHHHHHhCcccHH
Confidence 99999998864 4789999999999875 599999999999999999999987654433
|
|
| >cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import | Back alignment and domain information |
|---|
Probab=99.98 E-value=4.3e-32 Score=297.71 Aligned_cols=193 Identities=22% Similarity=0.336 Sum_probs=167.4
Q ss_pred eEEEEEEEEEEcCCCCceeeCCCCCCHHHHHHHHhhcccCCCceEEEcCeeCCCCChHHHhhcCeeecccccccc-ccch
Q 037346 947 EVNIRHLQVRYAPNLPLVLRGRTGSGKSTLIQTLFRIVESTAGHILIDGKDISLIGLHDLRTRLSIIPQDPTMFE-GTTR 1025 (1156)
Q Consensus 947 ~I~~~~Vsf~Y~~~~~~vL~G~SGsGKSTL~~lL~rl~~p~~G~I~idG~di~~i~~~~LR~~i~~VpQdp~LF~-gTIr 1025 (1156)
...++||+|+..+++.++|.|+||||||||+++|+|+++|++|+|.+||.++...+. .|++++||||+|.+|. .|++
T Consensus 15 ~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~--~~~~i~~v~q~~~~~~~~tv~ 92 (239)
T cd03296 15 FVALDDVSLDIPSGELVALLGPSGSGKTTLLRLIAGLERPDSGTILFGGEDATDVPV--QERNVGFVFQHYALFRHMTVF 92 (239)
T ss_pred EEeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCCc--cccceEEEecCCcccCCCCHH
Confidence 347899999999999899999999999999999999999999999999999887654 3678999999999986 5999
Q ss_pred hccCCCCC---C----C----HHHHHHHHHHcCCChHHHhhcCCcccc-------ccccccCCCEEEEecCCcCCCHHHH
Q 037346 1026 SNLDPLEE---H----A----DEQIWEALDKCQLGDEVRKKKGKLDSQ-------GRVLLKKSKVLVLDEATASVDTATD 1087 (1156)
Q Consensus 1026 ~Nl~~~~~---~----~----deei~~al~~~~l~~~i~~lp~gl~s~-------ARALLr~~~ILiLDEaTS~LD~~te 1087 (1156)
+|+.+... . . ++++.++++.+++.+.....+..|..+ ||||+++|++|||||||++||+++.
T Consensus 93 e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~llllDEP~~~LD~~~~ 172 (239)
T cd03296 93 DNVAFGLRVKPRSERPPEAEIRAKVHELLKLVQLDWLADRYPAQLSGGQRQRVALARALAVEPKVLLLDEPFGALDAKVR 172 (239)
T ss_pred HHHhhhhhhccccccCCHHHHHHHHHHHHHHcCChhhhhcChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHH
Confidence 99975311 1 1 245778899999988877777777655 8999999999999999999999999
Q ss_pred HHHHHHHHHhcC--CceEEEeecCccccc-ccCEEEEEeCcEEeeecChhHHhcCCC
Q 037346 1088 NQIQQTLRQHFS--DCTVVTIAHRITSVL-DSAMVLLLNHGLIKEYDSPTKLLENKS 1141 (1156)
Q Consensus 1088 ~~I~~~l~~~~~--~~TvI~IaHrl~ti~-~~D~I~Vl~~G~IvE~G~~~eLl~~~~ 1141 (1156)
+.+.+.|++..+ ++|||+|||+++.+. .||+|++|++|++++.|+++++.+.+.
T Consensus 173 ~~l~~~l~~~~~~~~~tvii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~~~ 229 (239)
T cd03296 173 KELRRWLRRLHDELHVTTVFVTHDQEEALEVADRVVVMNKGRIEQVGTPDEVYDHPA 229 (239)
T ss_pred HHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCeEEEecCHHHHhcCCC
Confidence 999999988753 789999999999865 499999999999999999999986543
|
Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.98 E-value=2.5e-32 Score=281.81 Aligned_cols=202 Identities=25% Similarity=0.384 Sum_probs=168.9
Q ss_pred EEEEEEEEEcCCCCceeeCCCCCCHHHHHHHHhhcccCCCceEEEcCeeCCCC-ChHHHhhcCeeecccccc-c--cccc
Q 037346 949 NIRHLQVRYAPNLPLVLRGRTGSGKSTLIQTLFRIVESTAGHILIDGKDISLI-GLHDLRTRLSIIPQDPTM-F--EGTT 1024 (1156)
Q Consensus 949 ~~~~Vsf~Y~~~~~~vL~G~SGsGKSTL~~lL~rl~~p~~G~I~idG~di~~i-~~~~LR~~i~~VpQdp~L-F--~gTI 1024 (1156)
.++||||...+|+.+.|.|+||||||||.++|+|+.+|++|+|.+||.++... .-+..++.+.+|+|||.- + .-||
T Consensus 22 ~l~~VS~~i~~Ge~lgivGeSGsGKSTL~r~l~Gl~~p~~G~I~~~G~~~~~~~~~~~~~~~VQmVFQDp~~SLnP~~tv 101 (252)
T COG1124 22 ALNNVSLEIERGETLGIVGESGSGKSTLARLLAGLEKPSSGSILLDGKPLAPKKRAKAFYRPVQMVFQDPYSSLNPRRTV 101 (252)
T ss_pred hhcceeEEecCCCEEEEEcCCCCCHHHHHHHHhcccCCCCceEEECCcccCccccchhhccceeEEecCCccccCcchhH
Confidence 68999999999999999999999999999999999999999999999766553 344678899999999962 2 1255
Q ss_pred hhcc----CCCC-CCCHHHHHHHHHHcCCCh-HHHhhcCCcccc-------ccccccCCCEEEEecCCcCCCHHHHHHHH
Q 037346 1025 RSNL----DPLE-EHADEQIWEALDKCQLGD-EVRKKKGKLDSQ-------GRVLLKKSKVLVLDEATASVDTATDNQIQ 1091 (1156)
Q Consensus 1025 r~Nl----~~~~-~~~deei~~al~~~~l~~-~i~~lp~gl~s~-------ARALLr~~~ILiLDEaTS~LD~~te~~I~ 1091 (1156)
++-| .+.+ +...++++++|+.+||.+ +....|..|.-+ ||||.-+|++||||||||+||.-..+.|.
T Consensus 102 ~~~l~Epl~~~~~~~~~~~i~~~L~~VgL~~~~l~R~P~eLSGGQ~QRiaIARAL~~~PklLIlDEptSaLD~siQa~Il 181 (252)
T COG1124 102 GRILSEPLRPHGLSKSQQRIAELLDQVGLPPSFLDRRPHELSGGQRQRIAIARALIPEPKLLILDEPTSALDVSVQAQIL 181 (252)
T ss_pred HHHHhhhhccCCccHHHHHHHHHHHHcCCCHHHHhcCchhcChhHHHHHHHHHHhccCCCEEEecCchhhhcHHHHHHHH
Confidence 5544 3311 123566999999999975 556678776544 89999999999999999999999999999
Q ss_pred HHHHHhcCCc--eEEEeecCcccccc-cCEEEEEeCcEEeeecChhHHhcCCCChHHHHHHH
Q 037346 1092 QTLRQHFSDC--TVVTIAHRITSVLD-SAMVLLLNHGLIKEYDSPTKLLENKSSSFAQLVAE 1150 (1156)
Q Consensus 1092 ~~l~~~~~~~--TvI~IaHrl~ti~~-~D~I~Vl~~G~IvE~G~~~eLl~~~~g~f~~l~~~ 1150 (1156)
+.+.+..+++ |.|+|||+++.+.. ||||+||++|++||.++-+++...+...|.+..-+
T Consensus 182 nlL~~l~~~~~lt~l~IsHdl~~v~~~cdRi~Vm~~G~ivE~~~~~~l~~~~~h~ytr~Ll~ 243 (252)
T COG1124 182 NLLLELKKERGLTYLFISHDLALVEHMCDRIAVMDNGQIVEIGPTEELLSHPSHPYTRELLE 243 (252)
T ss_pred HHHHHHHHhcCceEEEEeCcHHHHHHHhhheeeeeCCeEEEeechhhhhcCCccHHHHHHHH
Confidence 9998877655 99999999999986 99999999999999999999998756667665543
|
|
| >cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds | Back alignment and domain information |
|---|
Probab=99.98 E-value=1.8e-32 Score=297.13 Aligned_cols=188 Identities=23% Similarity=0.302 Sum_probs=166.3
Q ss_pred EEEEEEEEEEcCCCCceeeCCCCCCHHHHHHHHhhcccCCCceEEEcCeeCCCCChHHHhhcCeeeccccccc-cccchh
Q 037346 948 VNIRHLQVRYAPNLPLVLRGRTGSGKSTLIQTLFRIVESTAGHILIDGKDISLIGLHDLRTRLSIIPQDPTMF-EGTTRS 1026 (1156)
Q Consensus 948 I~~~~Vsf~Y~~~~~~vL~G~SGsGKSTL~~lL~rl~~p~~G~I~idG~di~~i~~~~LR~~i~~VpQdp~LF-~gTIr~ 1026 (1156)
-.++|++|+..+++.++|.|+||||||||+++|+|+++|++|+|.+||.++.... ..+|+++++|||++.+| ..|+++
T Consensus 16 ~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~-~~~~~~i~~v~q~~~~~~~~tv~~ 94 (220)
T cd03263 16 PAVDDLSLNVYKGEIFGLLGHNGAGKTTTLKMLTGELRPTSGTAYINGYSIRTDR-KAARQSLGYCPQFDALFDELTVRE 94 (220)
T ss_pred eeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEecccch-HHHhhhEEEecCcCCccccCCHHH
Confidence 4799999999999999999999999999999999999999999999999987653 67788999999999998 579999
Q ss_pred ccCCCC---CCC----HHHHHHHHHHcCCChHHHhhcCCcccc-------ccccccCCCEEEEecCCcCCCHHHHHHHHH
Q 037346 1027 NLDPLE---EHA----DEQIWEALDKCQLGDEVRKKKGKLDSQ-------GRVLLKKSKVLVLDEATASVDTATDNQIQQ 1092 (1156)
Q Consensus 1027 Nl~~~~---~~~----deei~~al~~~~l~~~i~~lp~gl~s~-------ARALLr~~~ILiLDEaTS~LD~~te~~I~~ 1092 (1156)
|+.+.. ... ++++.++++..++.+.....+..|..+ |||++++|++|||||||++||+.+.+.+.+
T Consensus 95 ~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDEP~~~LD~~~~~~l~~ 174 (220)
T cd03263 95 HLRFYARLKGLPKSEIKEEVELLLRVLGLTDKANKRARTLSGGMKRKLSLAIALIGGPSVLLLDEPTSGLDPASRRAIWD 174 (220)
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHHhChhhhCCHHHHHHHHHHHHHhcCCCEEEECCCCCCCCHHHHHHHHH
Confidence 986421 111 356789999999988777666666544 899999999999999999999999999999
Q ss_pred HHHHhcCCceEEEeecCcccccc-cCEEEEEeCcEEeeecChhHH
Q 037346 1093 TLRQHFSDCTVVTIAHRITSVLD-SAMVLLLNHGLIKEYDSPTKL 1136 (1156)
Q Consensus 1093 ~l~~~~~~~TvI~IaHrl~ti~~-~D~I~Vl~~G~IvE~G~~~eL 1136 (1156)
.|++..+++|+|++||+++.+.. ||+|++|++|++++.|+++++
T Consensus 175 ~l~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~g~i~~~~~~~~~ 219 (220)
T cd03263 175 LILEVRKGRSIILTTHSMDEAEALCDRIAIMSDGKLRCIGSPQEL 219 (220)
T ss_pred HHHHHhcCCEEEEEcCCHHHHHHhcCEEEEEECCEEEecCCHHHc
Confidence 99988777999999999998865 999999999999999999875
|
Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages. |
| >cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system | Back alignment and domain information |
|---|
Probab=99.98 E-value=2.6e-32 Score=300.28 Aligned_cols=191 Identities=27% Similarity=0.409 Sum_probs=168.6
Q ss_pred eEEEEEEEEEEcCCCCceeeCCCCCCHHHHHHHHhhcccCCCceEEEcCeeCCCCC---hHHHhhcCeeecccccccc-c
Q 037346 947 EVNIRHLQVRYAPNLPLVLRGRTGSGKSTLIQTLFRIVESTAGHILIDGKDISLIG---LHDLRTRLSIIPQDPTMFE-G 1022 (1156)
Q Consensus 947 ~I~~~~Vsf~Y~~~~~~vL~G~SGsGKSTL~~lL~rl~~p~~G~I~idG~di~~i~---~~~LR~~i~~VpQdp~LF~-g 1022 (1156)
...++|++|...+++.++|.|+||||||||+++|+|+++|++|+|.+||.++...+ ...+|+.++++||++.+|. .
T Consensus 14 ~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~ 93 (241)
T cd03256 14 KKALKDVSLSINPGEFVALIGPSGAGKSTLLRCLNGLVEPTSGSVLIDGTDINKLKGKALRQLRRQIGMIFQQFNLIERL 93 (241)
T ss_pred cEEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCCceEEECCEeccccCHhHHHHHHhccEEEcccCcccccC
Confidence 34799999999999999999999999999999999999999999999999998877 5678899999999999887 6
Q ss_pred cchhccCCCC---------------CCCHHHHHHHHHHcCCChHHHhhcCCcccc-------ccccccCCCEEEEecCCc
Q 037346 1023 TTRSNLDPLE---------------EHADEQIWEALDKCQLGDEVRKKKGKLDSQ-------GRVLLKKSKVLVLDEATA 1080 (1156)
Q Consensus 1023 TIr~Nl~~~~---------------~~~deei~~al~~~~l~~~i~~lp~gl~s~-------ARALLr~~~ILiLDEaTS 1080 (1156)
|+++|+.+.. +..++++.++++.+++.+.....+..|..+ ||||+++|+||||||||+
T Consensus 94 tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDEPt~ 173 (241)
T cd03256 94 SVLENVLSGRLGRRSTWRSLFGLFPKEEKQRALAALERVGLLDKAYQRADQLSGGQQQRVAIARALMQQPKLILADEPVA 173 (241)
T ss_pred cHHHHHHhhhcccchhhhhhcccCcHHHHHHHHHHHHHcCChhhhCCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCccc
Confidence 9999996321 112356788999999987777666666654 899999999999999999
Q ss_pred CCCHHHHHHHHHHHHHhc--CCceEEEeecCccccc-ccCEEEEEeCcEEeeecChhHHh
Q 037346 1081 SVDTATDNQIQQTLRQHF--SDCTVVTIAHRITSVL-DSAMVLLLNHGLIKEYDSPTKLL 1137 (1156)
Q Consensus 1081 ~LD~~te~~I~~~l~~~~--~~~TvI~IaHrl~ti~-~~D~I~Vl~~G~IvE~G~~~eLl 1137 (1156)
+||+.+...+.+.|++.. .++|||+|||+++.+. .||+|++|++|++++.|+++++.
T Consensus 174 ~LD~~~~~~l~~~l~~~~~~~~~tii~~tH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~~ 233 (241)
T cd03256 174 SLDPASSRQVMDLLKRINREEGITVIVSLHQVDLAREYADRIVGLKDGRIVFDGPPAELT 233 (241)
T ss_pred cCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEeecCHHHhh
Confidence 999999999999999875 3789999999999988 69999999999999999999874
|
Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >TIGR01187 potA spermidine/putrescine ABC transporter ATP-binding subunit | Back alignment and domain information |
|---|
Probab=99.98 E-value=3.3e-32 Score=310.45 Aligned_cols=168 Identities=30% Similarity=0.418 Sum_probs=143.9
Q ss_pred EEcCCCCChHHHHHHHhCCCCCCCcEEEEcCe-----------EEEEecCCcCCCc-cHHHHhhcCCC---CC----HHH
Q 037346 391 VCGTVGSGKSSCLSCILGGVPKESGIIRLCGT-----------KAYVAQSPWIQSG-KIEENILFGKE---MD----RER 451 (1156)
Q Consensus 391 ivG~~GsGKSTll~~i~g~~~~~~G~i~~~g~-----------~~~v~Q~~~~~~~-ti~eni~~~~~---~~----~~~ 451 (1156)
|+||||||||||+++|+|+++|++|+|.++|. ++|++|++.+|.. |++||+.|+.. .. .++
T Consensus 1 l~G~nGsGKSTLl~~iaGl~~p~~G~I~i~g~~i~~~~~~~~~i~~v~q~~~l~~~~tv~enl~~~~~~~~~~~~~~~~~ 80 (325)
T TIGR01187 1 LLGPSGCGKTTLLRLLAGFEQPDSGSIMLDGEDVTNVPPHLRHINMVFQSYALFPHMTVEENVAFGLKMRKVPRAEIKPR 80 (325)
T ss_pred CcCCCCCCHHHHHHHHHCCCCCCceEEEECCEECCCCCHHHCCEEEEecCccccCCCcHHHHHHHHHhhcCCCHHHHHHH
Confidence 68999999999999999999999999999883 7999999988864 99999998632 12 234
Q ss_pred HHHHHHHhCCchhhhhCCCCCccccccCCCCCCHHHHHHHHHHHhhccCCCeeeeeCCCCCcCHHHHHHHHHHHHh---c
Q 037346 452 YERVLEACSLKKDLEVLPFGDQTIIGERGINLSGGQKQRIQIARPLYQDADIFLLDDPFSPVDDHTGAHLFKFCWV---S 528 (1156)
Q Consensus 452 ~~~~~~~~~l~~~~~~~~~g~~t~v~~~g~~LSgGqkqRi~lAral~~~~~illlDep~s~lD~~~~~~i~~~~~~---~ 528 (1156)
.+++++.+++.+..+ +...+||||||||++|||||+++|+++||||||++||+.+++.+.+.+.. .
T Consensus 81 ~~~~l~~~~l~~~~~-----------~~~~~LSgGq~qRvalaraL~~~p~lllLDEP~s~LD~~~~~~l~~~l~~l~~~ 149 (325)
T TIGR01187 81 VLEALRLVQLEEFAD-----------RKPHQLSGGQQQRVALARALVFKPKILLLDEPLSALDKKLRDQMQLELKTIQEQ 149 (325)
T ss_pred HHHHHHHcCCcchhc-----------CChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHh
Confidence 566777777755443 34568999999999999999999999999999999999999998876643 2
Q ss_pred CCCEEEEEccCCCccc-cCCEEEEEeCCeEEEccChHHHHhc
Q 037346 529 SSKTVIYATHQVEFLP-AADLILVIKDGKITQAGKYSDILNS 569 (1156)
Q Consensus 529 ~~~tvi~vtH~~~~~~-~~d~i~~l~~G~i~~~g~~~~l~~~ 569 (1156)
.|+|+|+|||+++.+. .||+|++|++|++++.|+++++...
T Consensus 150 ~g~tiiivTHd~~e~~~~~d~i~vl~~G~i~~~g~~~~~~~~ 191 (325)
T TIGR01187 150 LGITFVFVTHDQEEAMTMSDRIAIMRKGKIAQIGTPEEIYEE 191 (325)
T ss_pred cCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhC
Confidence 4899999999998875 5999999999999999999998764
|
This model describes spermidine/putrescine ABC transporter, ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Polyamines like spermidine and putrescine play vital role in cell proliferation, differentiation, and ion homeostasis. The concentration of polyamines within the cell are regulated by biosynthesis, degradation and transport (uptake and efflux included). |
| >PRK15079 oligopeptide ABC transporter ATP-binding protein OppF; Provisional | Back alignment and domain information |
|---|
Probab=99.98 E-value=6.1e-32 Score=307.70 Aligned_cols=200 Identities=21% Similarity=0.315 Sum_probs=172.6
Q ss_pred eEEEEEEEEEEcCCCCceeeCCCCCCHHHHHHHHhhcccCCCceEEEcCeeCCCCChHH---HhhcCeeecccc--ccc-
Q 037346 947 EVNIRHLQVRYAPNLPLVLRGRTGSGKSTLIQTLFRIVESTAGHILIDGKDISLIGLHD---LRTRLSIIPQDP--TMF- 1020 (1156)
Q Consensus 947 ~I~~~~Vsf~Y~~~~~~vL~G~SGsGKSTL~~lL~rl~~p~~G~I~idG~di~~i~~~~---LR~~i~~VpQdp--~LF- 1020 (1156)
...++||||...+++.++|.|+||||||||+++|+|+++|++|+|.+||.++.+++.++ +|++|+||+|+| .||
T Consensus 34 ~~~l~~vsl~i~~Ge~~~lvG~sGsGKSTLlk~i~Gl~~p~~G~I~~~G~~i~~~~~~~~~~~r~~i~~v~Q~~~~~l~p 113 (331)
T PRK15079 34 LKAVDGVTLRLYEGETLGVVGESGCGKSTFARAIIGLVKATDGEVAWLGKDLLGMKDDEWRAVRSDIQMIFQDPLASLNP 113 (331)
T ss_pred eEEEeeEEEEEcCCCEEEEECCCCCCHHHHHHHHHCCCCCCCcEEEECCEECCcCCHHHHHHHhCceEEEecCchhhcCC
Confidence 34799999999999999999999999999999999999999999999999999887554 678899999999 477
Q ss_pred cccchhccCC----CC-CCC----HHHHHHHHHHcCCC-hHHHhhcCCcccc-------ccccccCCCEEEEecCCcCCC
Q 037346 1021 EGTTRSNLDP----LE-EHA----DEQIWEALDKCQLG-DEVRKKKGKLDSQ-------GRVLLKKSKVLVLDEATASVD 1083 (1156)
Q Consensus 1021 ~gTIr~Nl~~----~~-~~~----deei~~al~~~~l~-~~i~~lp~gl~s~-------ARALLr~~~ILiLDEaTS~LD 1083 (1156)
..||.+||.. .. ..+ ++.+.++++.+++. +.....|..|..+ ||||+.+|++||+||||++||
T Consensus 114 ~~tv~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~vgl~~~~~~~~p~~LSgG~~QRv~iArAL~~~P~llilDEPts~LD 193 (331)
T PRK15079 114 RMTIGEIIAEPLRTYHPKLSRQEVKDRVKAMMLKVGLLPNLINRYPHEFSGGQCQRIGIARALILEPKLIICDEPVSALD 193 (331)
T ss_pred CCCHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCChHHhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCC
Confidence 4799999852 11 123 34567889999995 4566677766654 899999999999999999999
Q ss_pred HHHHHHHHHHHHHhcC--CceEEEeecCcccccc-cCEEEEEeCcEEeeecChhHHhcCCCChHHH
Q 037346 1084 TATDNQIQQTLRQHFS--DCTVVTIAHRITSVLD-SAMVLLLNHGLIKEYDSPTKLLENKSSSFAQ 1146 (1156)
Q Consensus 1084 ~~te~~I~~~l~~~~~--~~TvI~IaHrl~ti~~-~D~I~Vl~~G~IvE~G~~~eLl~~~~g~f~~ 1146 (1156)
..+...|.+.|+++.+ +.|+|+|||+++.+.. ||+|+||++|+|+|.|+++++++++...|.+
T Consensus 194 ~~~~~~i~~lL~~l~~~~~~til~iTHdl~~~~~~~dri~vl~~G~ive~g~~~~i~~~~~~py~~ 259 (331)
T PRK15079 194 VSIQAQVVNLLQQLQREMGLSLIFIAHDLAVVKHISDRVLVMYLGHAVELGTYDEVYHNPLHPYTK 259 (331)
T ss_pred HHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHcCCCCHHHH
Confidence 9999999999988753 7899999999999975 9999999999999999999999876666655
|
|
| >cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport | Back alignment and domain information |
|---|
Probab=99.98 E-value=2.5e-32 Score=298.59 Aligned_cols=192 Identities=27% Similarity=0.392 Sum_probs=169.6
Q ss_pred EEEEEEEEEEcCCCCceeeCCCCCCHHHHHHHHhhcccCCCceEEEcCeeCCCCChH---HHhhcCeeecccccccc-cc
Q 037346 948 VNIRHLQVRYAPNLPLVLRGRTGSGKSTLIQTLFRIVESTAGHILIDGKDISLIGLH---DLRTRLSIIPQDPTMFE-GT 1023 (1156)
Q Consensus 948 I~~~~Vsf~Y~~~~~~vL~G~SGsGKSTL~~lL~rl~~p~~G~I~idG~di~~i~~~---~LR~~i~~VpQdp~LF~-gT 1023 (1156)
..++|++|+.++++.++|.|+||||||||+++|+|+++|++|+|.+||.++...+.. .+|+.++++||++.+|. .|
T Consensus 19 ~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~t 98 (233)
T cd03258 19 TALKDVSLSVPKGEIFGIIGRSGAGKSTLIRCINGLERPTSGSVLVDGTDLTLLSGKELRKARRRIGMIFQHFNLLSSRT 98 (233)
T ss_pred eeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcccCCHHHHHHHHhheEEEccCcccCCCCc
Confidence 579999999999999999999999999999999999999999999999999887654 35789999999999997 59
Q ss_pred chhccCCC---CCC----CHHHHHHHHHHcCCChHHHhhcCCcccc-------ccccccCCCEEEEecCCcCCCHHHHHH
Q 037346 1024 TRSNLDPL---EEH----ADEQIWEALDKCQLGDEVRKKKGKLDSQ-------GRVLLKKSKVLVLDEATASVDTATDNQ 1089 (1156)
Q Consensus 1024 Ir~Nl~~~---~~~----~deei~~al~~~~l~~~i~~lp~gl~s~-------ARALLr~~~ILiLDEaTS~LD~~te~~ 1089 (1156)
+++|+.+. ... .++++.++++..++.+.....+..|..+ ||||+++|++|||||||++||+.+...
T Consensus 99 ~~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~lllLDEP~~~LD~~~~~~ 178 (233)
T cd03258 99 VFENVALPLEIAGVPKAEIEERVLELLELVGLEDKADAYPAQLSGGQKQRVGIARALANNPKVLLCDEATSALDPETTQS 178 (233)
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCChhhhhcChhhCCHHHHHHHHHHHHHhcCCCEEEecCCCCcCCHHHHHH
Confidence 99998642 111 2456889999999988887777777655 899999999999999999999999999
Q ss_pred HHHHHHHhcC--CceEEEeecCcccccc-cCEEEEEeCcEEeeecChhHHhcC
Q 037346 1090 IQQTLRQHFS--DCTVVTIAHRITSVLD-SAMVLLLNHGLIKEYDSPTKLLEN 1139 (1156)
Q Consensus 1090 I~~~l~~~~~--~~TvI~IaHrl~ti~~-~D~I~Vl~~G~IvE~G~~~eLl~~ 1139 (1156)
+.+.|+++.+ ++|||+|||+++.+.. ||+|++|++|++++.|++++++++
T Consensus 179 l~~~l~~~~~~~~~tvii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~ 231 (233)
T cd03258 179 ILALLRDINRELGLTIVLITHEMEVVKRICDRVAVMEKGEVVEEGTVEEVFAN 231 (233)
T ss_pred HHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEecCHHHHhcC
Confidence 9999998753 7899999999999865 999999999999999999998753
|
Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK13637 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.98 E-value=3e-32 Score=306.09 Aligned_cols=192 Identities=26% Similarity=0.422 Sum_probs=168.0
Q ss_pred eEEEEEEEEEEcCCCCceeeCCCCCCHHHHHHHHhhcccCCCceEEEcCeeCCCCC--hHHHhhcCeeecccc--ccccc
Q 037346 947 EVNIRHLQVRYAPNLPLVLRGRTGSGKSTLIQTLFRIVESTAGHILIDGKDISLIG--LHDLRTRLSIIPQDP--TMFEG 1022 (1156)
Q Consensus 947 ~I~~~~Vsf~Y~~~~~~vL~G~SGsGKSTL~~lL~rl~~p~~G~I~idG~di~~i~--~~~LR~~i~~VpQdp--~LF~g 1022 (1156)
...++||+|...+|+.++|.|+||||||||+++|.|+++|++|+|.+||.++.+.+ ...+|++++||||+| .+|+.
T Consensus 20 ~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~ig~v~q~~~~~~~~~ 99 (287)
T PRK13637 20 KKALDNVNIEIEDGEFVGLIGHTGSGKSTLIQHLNGLLKPTSGKIIIDGVDITDKKVKLSDIRKKVGLVFQYPEYQLFEE 99 (287)
T ss_pred cceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEECCEECCCcCccHHHHhhceEEEecCchhccccc
Confidence 35799999999999999999999999999999999999999999999999998754 457889999999998 57899
Q ss_pred cchhccCCCC---CCC----HHHHHHHHHHcCCC--hHHHhhcCCcccc-------ccccccCCCEEEEecCCcCCCHHH
Q 037346 1023 TTRSNLDPLE---EHA----DEQIWEALDKCQLG--DEVRKKKGKLDSQ-------GRVLLKKSKVLVLDEATASVDTAT 1086 (1156)
Q Consensus 1023 TIr~Nl~~~~---~~~----deei~~al~~~~l~--~~i~~lp~gl~s~-------ARALLr~~~ILiLDEaTS~LD~~t 1086 (1156)
|+++|+.+.. ..+ .+.+.++++.+++. ++....|..|..+ ||||+.+|+||||||||++||+.+
T Consensus 100 tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~~LSgGq~qrv~iAraL~~~P~llllDEPt~gLD~~~ 179 (287)
T PRK13637 100 TIEKDIAFGPINLGLSEEEIENRVKRAMNIVGLDYEDYKDKSPFELSGGQKRRVAIAGVVAMEPKILILDEPTAGLDPKG 179 (287)
T ss_pred cHHHHHHhHHHHCCCCHHHHHHHHHHHHHHcCCCchhhccCCcccCCHHHHHHHHHHHHHHcCCCEEEEECCccCCCHHH
Confidence 9999997532 122 24578999999997 5555556666544 899999999999999999999999
Q ss_pred HHHHHHHHHHhcC--CceEEEeecCccccc-ccCEEEEEeCcEEeeecChhHHhc
Q 037346 1087 DNQIQQTLRQHFS--DCTVVTIAHRITSVL-DSAMVLLLNHGLIKEYDSPTKLLE 1138 (1156)
Q Consensus 1087 e~~I~~~l~~~~~--~~TvI~IaHrl~ti~-~~D~I~Vl~~G~IvE~G~~~eLl~ 1138 (1156)
...+.+.|+++.+ +.|||+|||+++.+. .||||++|++|++++.|+++++++
T Consensus 180 ~~~l~~~l~~l~~~~g~tvi~vtHd~~~~~~~~drv~~l~~G~i~~~g~~~~~~~ 234 (287)
T PRK13637 180 RDEILNKIKELHKEYNMTIILVSHSMEDVAKLADRIIVMNKGKCELQGTPREVFK 234 (287)
T ss_pred HHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHHHh
Confidence 9999999998753 789999999999875 599999999999999999999875
|
|
| >PRK10851 sulfate/thiosulfate transporter subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.98 E-value=4.3e-32 Score=311.34 Aligned_cols=195 Identities=21% Similarity=0.349 Sum_probs=171.7
Q ss_pred EEEEEEEEEEcCCCCceeeCCCCCCHHHHHHHHhhcccCCCceEEEcCeeCCCCChHHHhhcCeeeccccccccc-cchh
Q 037346 948 VNIRHLQVRYAPNLPLVLRGRTGSGKSTLIQTLFRIVESTAGHILIDGKDISLIGLHDLRTRLSIIPQDPTMFEG-TTRS 1026 (1156)
Q Consensus 948 I~~~~Vsf~Y~~~~~~vL~G~SGsGKSTL~~lL~rl~~p~~G~I~idG~di~~i~~~~LR~~i~~VpQdp~LF~g-TIr~ 1026 (1156)
-.++|++|...+++.++|.||||||||||+++|+|+++|++|+|.+||.++...+. .|++++||+|++.+|.. |+++
T Consensus 16 ~~l~~isl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~i~g~~i~~~~~--~~r~i~~v~Q~~~l~p~~tv~e 93 (353)
T PRK10851 16 QVLNDISLDIPSGQMVALLGPSGSGKTTLLRIIAGLEHQTSGHIRFHGTDVSRLHA--RDRKVGFVFQHYALFRHMTVFD 93 (353)
T ss_pred EEEEEeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCH--HHCCEEEEecCcccCCCCcHHH
Confidence 47899999999999999999999999999999999999999999999999987654 46789999999999975 9999
Q ss_pred ccCCCC-------CCC----HHHHHHHHHHcCCChHHHhhcCCcccc-------ccccccCCCEEEEecCCcCCCHHHHH
Q 037346 1027 NLDPLE-------EHA----DEQIWEALDKCQLGDEVRKKKGKLDSQ-------GRVLLKKSKVLVLDEATASVDTATDN 1088 (1156)
Q Consensus 1027 Nl~~~~-------~~~----deei~~al~~~~l~~~i~~lp~gl~s~-------ARALLr~~~ILiLDEaTS~LD~~te~ 1088 (1156)
|+.+.. ..+ ++++.++++.+++.++....|..|..+ ||||+++|++||||||||+||+.+..
T Consensus 94 ni~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGq~QRvalArAL~~~P~llLLDEP~s~LD~~~r~ 173 (353)
T PRK10851 94 NIAFGLTVLPRRERPNAAAIKAKVTQLLEMVQLAHLADRYPAQLSGGQKQRVALARALAVEPQILLLDEPFGALDAQVRK 173 (353)
T ss_pred HHHhhhhhcccccCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHH
Confidence 997531 112 356889999999998888888777655 89999999999999999999999999
Q ss_pred HHHHHHHHhcC--CceEEEeecCccccc-ccCEEEEEeCcEEeeecChhHHhcCCCChH
Q 037346 1089 QIQQTLRQHFS--DCTVVTIAHRITSVL-DSAMVLLLNHGLIKEYDSPTKLLENKSSSF 1144 (1156)
Q Consensus 1089 ~I~~~l~~~~~--~~TvI~IaHrl~ti~-~~D~I~Vl~~G~IvE~G~~~eLl~~~~g~f 1144 (1156)
.+.+.|+++.+ ++|+|+|||+++.+. -||+|+||++|+|++.|+|++++.++...|
T Consensus 174 ~l~~~L~~l~~~~g~tii~vTHd~~ea~~~~Dri~vl~~G~i~~~g~~~~i~~~p~~~~ 232 (353)
T PRK10851 174 ELRRWLRQLHEELKFTSVFVTHDQEEAMEVADRVVVMSQGNIEQAGTPDQVWREPATRF 232 (353)
T ss_pred HHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhCccchH
Confidence 99999998754 689999999999865 499999999999999999999998765444
|
|
| >TIGR03265 PhnT2 putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=99.98 E-value=3.7e-32 Score=311.82 Aligned_cols=195 Identities=24% Similarity=0.392 Sum_probs=172.9
Q ss_pred EEEEEEEEEEcCCCCceeeCCCCCCHHHHHHHHhhcccCCCceEEEcCeeCCCCChHHHhhcCeeecccccccc-ccchh
Q 037346 948 VNIRHLQVRYAPNLPLVLRGRTGSGKSTLIQTLFRIVESTAGHILIDGKDISLIGLHDLRTRLSIIPQDPTMFE-GTTRS 1026 (1156)
Q Consensus 948 I~~~~Vsf~Y~~~~~~vL~G~SGsGKSTL~~lL~rl~~p~~G~I~idG~di~~i~~~~LR~~i~~VpQdp~LF~-gTIr~ 1026 (1156)
-.++||+|...+++.++|.||||||||||+++|+|+.+|++|+|.+||.++.+.+.. ++.++||+|++.+|. .|+++
T Consensus 18 ~~l~~vs~~i~~Ge~~~l~GpsGsGKSTLLr~iaGl~~p~~G~I~i~g~~~~~~~~~--~r~ig~v~Q~~~lfp~~tv~e 95 (353)
T TIGR03265 18 TALKDISLSVKKGEFVCLLGPSGCGKTTLLRIIAGLERQTAGTIYQGGRDITRLPPQ--KRDYGIVFQSYALFPNLTVAD 95 (353)
T ss_pred EEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHCCCCCCceEEEECCEECCCCCHH--HCCEEEEeCCcccCCCCcHHH
Confidence 368899999988888899999999999999999999999999999999999887764 678999999999996 69999
Q ss_pred ccCCCC---CCC----HHHHHHHHHHcCCChHHHhhcCCcccc-------ccccccCCCEEEEecCCcCCCHHHHHHHHH
Q 037346 1027 NLDPLE---EHA----DEQIWEALDKCQLGDEVRKKKGKLDSQ-------GRVLLKKSKVLVLDEATASVDTATDNQIQQ 1092 (1156)
Q Consensus 1027 Nl~~~~---~~~----deei~~al~~~~l~~~i~~lp~gl~s~-------ARALLr~~~ILiLDEaTS~LD~~te~~I~~ 1092 (1156)
|+.+.- ..+ ++++.++++..++.++....|..|..+ ||||+++|++|+||||||+||..+.+.+.+
T Consensus 96 Ni~~~~~~~~~~~~~~~~~~~~~l~~l~L~~~~~~~~~~LSgGq~QRvaLARaL~~~P~llLLDEP~s~LD~~~r~~l~~ 175 (353)
T TIGR03265 96 NIAYGLKNRGMGRAEVAERVAELLDLVGLPGSERKYPGQLSGGQQQRVALARALATSPGLLLLDEPLSALDARVREHLRT 175 (353)
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHcCCCchhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHH
Confidence 997531 111 456889999999999988888877755 899999999999999999999999999999
Q ss_pred HHHHhcC--CceEEEeecCccccc-ccCEEEEEeCcEEeeecChhHHhcCCCChH
Q 037346 1093 TLRQHFS--DCTVVTIAHRITSVL-DSAMVLLLNHGLIKEYDSPTKLLENKSSSF 1144 (1156)
Q Consensus 1093 ~l~~~~~--~~TvI~IaHrl~ti~-~~D~I~Vl~~G~IvE~G~~~eLl~~~~g~f 1144 (1156)
.|++..+ +.|+|+|||+++.+. -||+|+||++|+|++.|+|+++++++...|
T Consensus 176 ~L~~l~~~~~~tvi~vTHd~~ea~~l~d~i~vl~~G~i~~~g~~~~~~~~p~~~~ 230 (353)
T TIGR03265 176 EIRQLQRRLGVTTIMVTHDQEEALSMADRIVVMNHGVIEQVGTPQEIYRHPATPF 230 (353)
T ss_pred HHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhCCCCHH
Confidence 9988654 789999999999865 599999999999999999999998766555
|
This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely. |
| >PRK11147 ABC transporter ATPase component; Reviewed | Back alignment and domain information |
|---|
Probab=99.98 E-value=1.3e-31 Score=332.84 Aligned_cols=198 Identities=23% Similarity=0.358 Sum_probs=163.6
Q ss_pred ccEEEeeeEEEeCCCCCCCccccceEEeeCCeEEEEEcCCCCChHHHHHHHhCCCCCCCcEEEEcC--eEEEEecCCc-C
Q 037346 356 TAIEIIDGSFSWDFSSPNPTLRNINLKVFHGMRVAVCGTVGSGKSSCLSCILGGVPKESGIIRLCG--TKAYVAQSPW-I 432 (1156)
Q Consensus 356 ~~i~~~~~~f~~~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKSTll~~i~g~~~~~~G~i~~~g--~~~~v~Q~~~-~ 432 (1156)
..++++|+++.|+ ++++|+|+||+|++|++++|+||||||||||+++|+|+++|++|+|.++. .++|++|++. +
T Consensus 318 ~~l~~~~l~~~~~---~~~il~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~l~G~~~p~~G~i~~~~~~~i~y~~q~~~~l 394 (635)
T PRK11147 318 IVFEMENVNYQID---GKQLVKDFSAQVQRGDKIALIGPNGCGKTTLLKLMLGQLQADSGRIHCGTKLEVAYFDQHRAEL 394 (635)
T ss_pred ceEEEeeeEEEEC---CeEEEcCcEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEECCCcEEEEEeCccccc
Confidence 4699999999996 35799999999999999999999999999999999999999999999954 4899999863 4
Q ss_pred C-CccHHHHhhcCCC-C--C--HHHHHHHHHHhCCchhhhhCCCCCccccccCCCCCCHHHHHHHHHHHhhccCCCeeee
Q 037346 433 Q-SGKIEENILFGKE-M--D--RERYERVLEACSLKKDLEVLPFGDQTIIGERGINLSGGQKQRIQIARPLYQDADIFLL 506 (1156)
Q Consensus 433 ~-~~ti~eni~~~~~-~--~--~~~~~~~~~~~~l~~~~~~~~~g~~t~v~~~g~~LSgGqkqRi~lAral~~~~~illl 506 (1156)
+ +.||.||+.++.. . + ..+...+++.+++..+. ......+||||||||++||||++.+|++|||
T Consensus 395 ~~~~tv~e~l~~~~~~~~~~~~~~~~~~~l~~~~l~~~~----------~~~~~~~LSgGekqRl~la~al~~~p~lLlL 464 (635)
T PRK11147 395 DPEKTVMDNLAEGKQEVMVNGRPRHVLGYLQDFLFHPKR----------AMTPVKALSGGERNRLLLARLFLKPSNLLIL 464 (635)
T ss_pred CCCCCHHHHHHhhcccccccchHHHHHHHHHhcCCCHHH----------HhChhhhCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 4 4599999987532 1 1 23445566666654221 1234568999999999999999999999999
Q ss_pred eCCCCCcCHHHHHHHHHHHHhcCCCEEEEEccCCCccc-cCCEEEEEe-CCeEE-EccChHHHH
Q 037346 507 DDPFSPVDDHTGAHLFKFCWVSSSKTVIYATHQVEFLP-AADLILVIK-DGKIT-QAGKYSDIL 567 (1156)
Q Consensus 507 Dep~s~lD~~~~~~i~~~~~~~~~~tvi~vtH~~~~~~-~~d~i~~l~-~G~i~-~~g~~~~l~ 567 (1156)
||||++||+.+...+.+.+... +.|+|+||||++++. .||+|++|+ +|++. +.|+|++++
T Consensus 465 DEPt~~LD~~~~~~l~~~l~~~-~~tvi~vSHd~~~~~~~~d~i~~l~~~g~i~~~~g~y~~y~ 527 (635)
T PRK11147 465 DEPTNDLDVETLELLEELLDSY-QGTVLLVSHDRQFVDNTVTECWIFEGNGKIGRYVGGYHDAR 527 (635)
T ss_pred cCCCCCCCHHHHHHHHHHHHhC-CCeEEEEECCHHHHHHhcCEEEEEeCCCeEEEccCCHHHHH
Confidence 9999999999998887655434 459999999999986 599999998 89986 578888874
|
|
| >TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=99.98 E-value=3.6e-32 Score=299.50 Aligned_cols=190 Identities=26% Similarity=0.397 Sum_probs=166.5
Q ss_pred EEEEEEEEEEcCCCCceeeCCCCCCHHHHHHHHhhcccCCCceEEEcCeeCCCCCh---HHHhhcCeeecccccccc-cc
Q 037346 948 VNIRHLQVRYAPNLPLVLRGRTGSGKSTLIQTLFRIVESTAGHILIDGKDISLIGL---HDLRTRLSIIPQDPTMFE-GT 1023 (1156)
Q Consensus 948 I~~~~Vsf~Y~~~~~~vL~G~SGsGKSTL~~lL~rl~~p~~G~I~idG~di~~i~~---~~LR~~i~~VpQdp~LF~-gT 1023 (1156)
..++|++|+.++++.++|.|+||||||||+++|+|+++|++|+|.+||.++..++. ..+|+++++|||++.+|. .|
T Consensus 16 ~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~t 95 (243)
T TIGR02315 16 QALKNINLNINPGEFVAIIGPSGAGKSTLLRCINRLVEPSSGSILLEGTDITKLRGKKLRKLRRRIGMIFQHYNLIERLT 95 (243)
T ss_pred ceeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCccEEEECCEEhhhCCHHHHHHHHhheEEEcCCCccccccc
Confidence 47999999999999999999999999999999999999999999999999987764 457889999999999886 59
Q ss_pred chhccCCCC---------------CCCHHHHHHHHHHcCCChHHHhhcCCcccc-------ccccccCCCEEEEecCCcC
Q 037346 1024 TRSNLDPLE---------------EHADEQIWEALDKCQLGDEVRKKKGKLDSQ-------GRVLLKKSKVLVLDEATAS 1081 (1156)
Q Consensus 1024 Ir~Nl~~~~---------------~~~deei~~al~~~~l~~~i~~lp~gl~s~-------ARALLr~~~ILiLDEaTS~ 1081 (1156)
+++|+.+.. ...++++.++++.+++.+.....+..|..+ ||||+++|+||||||||++
T Consensus 96 v~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~llllDEPt~~ 175 (243)
T TIGR02315 96 VLENVLHGRLGYKPTWRSLLGRFSEEDKERALSALERVGLADKAYQRADQLSGGQQQRVAIARALAQQPDLILADEPIAS 175 (243)
T ss_pred HHHHHhhcccccccchhhhhccccHHHHHHHHHHHHHcCcHhhhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCccc
Confidence 999996421 011356888999999988777766666654 8999999999999999999
Q ss_pred CCHHHHHHHHHHHHHhcC--CceEEEeecCccccc-ccCEEEEEeCcEEeeecChhHHh
Q 037346 1082 VDTATDNQIQQTLRQHFS--DCTVVTIAHRITSVL-DSAMVLLLNHGLIKEYDSPTKLL 1137 (1156)
Q Consensus 1082 LD~~te~~I~~~l~~~~~--~~TvI~IaHrl~ti~-~~D~I~Vl~~G~IvE~G~~~eLl 1137 (1156)
||+++.+.+.+.|++..+ ++|+|+|||+++.+. .||+|++|++|++++.|+++++.
T Consensus 176 LD~~~~~~l~~~l~~~~~~~~~tiii~tH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~~ 234 (243)
T TIGR02315 176 LDPKTSKQVMDYLKRINKEDGITVIINLHQVDLAKKYADRIVGLKAGEIVFDGAPSELD 234 (243)
T ss_pred CCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCeEEEEECCEEEecCCHHHhC
Confidence 999999999999998743 789999999999985 59999999999999999999874
|
Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates. |
| >PRK10535 macrolide transporter ATP-binding /permease protein; Provisional | Back alignment and domain information |
|---|
Probab=99.98 E-value=1e-31 Score=333.65 Aligned_cols=199 Identities=27% Similarity=0.394 Sum_probs=168.8
Q ss_pred cEEEeeeEEEeCCC-CCCCccccceEEeeCCeEEEEEcCCCCChHHHHHHHhCCCCCCCcEEEEcCe-------------
Q 037346 357 AIEIIDGSFSWDFS-SPNPTLRNINLKVFHGMRVAVCGTVGSGKSSCLSCILGGVPKESGIIRLCGT------------- 422 (1156)
Q Consensus 357 ~i~~~~~~f~~~~~-~~~~~l~~i~l~i~~g~~~~ivG~~GsGKSTll~~i~g~~~~~~G~i~~~g~------------- 422 (1156)
.++++|+++.|+.. ..+++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.
T Consensus 4 ~l~~~nl~~~y~~~~~~~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~i~~~~~~~~~~~ 83 (648)
T PRK10535 4 LLELKDIRRSYPSGEEQVEVLKGISLDIYAGEMVAIVGASGSGKSTLMNILGCLDKPTSGTYRVAGQDVATLDADALAQL 83 (648)
T ss_pred EEEEeeEEEEeCCCCCCeeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEcCcCCHHHHHHH
Confidence 58999999999632 1246999999999999999999999999999999999999999999999872
Q ss_pred ----EEEEecCCcCCC-ccHHHHhhcCCC---C----CHHHHHHHHHHhCCchhhhhCCCCCccccccCCCCCCHHHHHH
Q 037346 423 ----KAYVAQSPWIQS-GKIEENILFGKE---M----DRERYERVLEACSLKKDLEVLPFGDQTIIGERGINLSGGQKQR 490 (1156)
Q Consensus 423 ----~~~v~Q~~~~~~-~ti~eni~~~~~---~----~~~~~~~~~~~~~l~~~~~~~~~g~~t~v~~~g~~LSgGqkqR 490 (1156)
++|++|++.++. .|+.||+.++.. . .+++..+.++.+++.+.++ ..+.+||||||||
T Consensus 84 ~~~~i~~v~q~~~l~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~lgl~~~~~-----------~~~~~LS~Gq~qr 152 (648)
T PRK10535 84 RREHFGFIFQRYHLLSHLTAAQNVEVPAVYAGLERKQRLLRAQELLQRLGLEDRVE-----------YQPSQLSGGQQQR 152 (648)
T ss_pred HhccEEEEeCCcccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCChhhhc-----------CCcccCCHHHHHH
Confidence 589999998886 599999986421 1 1234455666666654433 4456899999999
Q ss_pred HHHHHhhccCCCeeeeeCCCCCcCHHHHHHHHHHHHh--cCCCEEEEEccCCCccccCCEEEEEeCCeEEEccChHHH
Q 037346 491 IQIARPLYQDADIFLLDDPFSPVDDHTGAHLFKFCWV--SSSKTVIYATHQVEFLPAADLILVIKDGKITQAGKYSDI 566 (1156)
Q Consensus 491 i~lAral~~~~~illlDep~s~lD~~~~~~i~~~~~~--~~~~tvi~vtH~~~~~~~~d~i~~l~~G~i~~~g~~~~l 566 (1156)
++|||||+++|+++||||||++||+.+++.+.+.+.. .+++|+|++||+++.+..||++++|++|+++++|+.++.
T Consensus 153 v~LAraL~~~P~lLllDEP~~gLD~~s~~~l~~ll~~l~~~g~tilivsH~~~~~~~~d~i~~l~~G~i~~~g~~~~~ 230 (648)
T PRK10535 153 VSIARALMNGGQVILADEPTGALDSHSGEEVMAILHQLRDRGHTVIIVTHDPQVAAQAERVIEIRDGEIVRNPPAQEK 230 (648)
T ss_pred HHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhcCCEEEEECCCHHHHHhCCEEEEEECCEEEeecCcccc
Confidence 9999999999999999999999999999988876543 358999999999998888999999999999999987654
|
|
| >PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=5e-32 Score=329.00 Aligned_cols=193 Identities=23% Similarity=0.366 Sum_probs=158.9
Q ss_pred ccEEEeeeEEEeCCCCCCCccccceEEeeCCeEEEEEcCCCCChHHHHHHHhCCCCCCCcEEEEcCe-------------
Q 037346 356 TAIEIIDGSFSWDFSSPNPTLRNINLKVFHGMRVAVCGTVGSGKSSCLSCILGGVPKESGIIRLCGT------------- 422 (1156)
Q Consensus 356 ~~i~~~~~~f~~~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKSTll~~i~g~~~~~~G~i~~~g~------------- 422 (1156)
..++++|+++ .+|+|+||+|++|++++|+||||||||||+++|+|+++|++|+|.++|.
T Consensus 267 ~~l~~~~l~~--------~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~ 338 (510)
T PRK15439 267 PVLTVEDLTG--------EGFRNISLEVRAGEILGLAGVVGAGRTELAETLYGLRPARGGRIMLNGKEINALSTAQRLAR 338 (510)
T ss_pred ceEEEeCCCC--------CCccceeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCCcEEEECCEECCCCCHHHHHhC
Confidence 3589999983 2599999999999999999999999999999999999999999999873
Q ss_pred -EEEEecCC---cCC-CccHHHHhhcC----CC--CC----HHHHHHHHHHhCCc-hhhhhCCCCCccccccCCCCCCHH
Q 037346 423 -KAYVAQSP---WIQ-SGKIEENILFG----KE--MD----RERYERVLEACSLK-KDLEVLPFGDQTIIGERGINLSGG 486 (1156)
Q Consensus 423 -~~~v~Q~~---~~~-~~ti~eni~~~----~~--~~----~~~~~~~~~~~~l~-~~~~~~~~g~~t~v~~~g~~LSgG 486 (1156)
++|+||++ .++ ..|+.+|+... .. .. +++.+++++.+++. .. ......+||||
T Consensus 339 ~i~~v~q~~~~~~l~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-----------~~~~~~~LSgG 407 (510)
T PRK15439 339 GLVYLPEDRQSSGLYLDAPLAWNVCALTHNRRGFWIKPARENAVLERYRRALNIKFNH-----------AEQAARTLSGG 407 (510)
T ss_pred CcEECCCChhhCCccCCCcHHHHHHhhhhhhhccccChHHHHHHHHHHHHHcCCCCCC-----------ccCccccCCcH
Confidence 79999986 244 45999998532 01 01 12344556666653 22 23455789999
Q ss_pred HHHHHHHHHhhccCCCeeeeeCCCCCcCHHHHHHHHHHHHh--cCCCEEEEEccCCCccc-cCCEEEEEeCCeEEEccCh
Q 037346 487 QKQRIQIARPLYQDADIFLLDDPFSPVDDHTGAHLFKFCWV--SSSKTVIYATHQVEFLP-AADLILVIKDGKITQAGKY 563 (1156)
Q Consensus 487 qkqRi~lAral~~~~~illlDep~s~lD~~~~~~i~~~~~~--~~~~tvi~vtH~~~~~~-~~d~i~~l~~G~i~~~g~~ 563 (1156)
||||++||||++.+|++|||||||++||+.+.+.+.+.+.. .+|.|+|++||+++.+. .||++++|++|+++..|+.
T Consensus 408 ~kqrl~la~al~~~p~lLlLDEPt~gLD~~~~~~l~~~l~~l~~~g~tiIivsHd~~~i~~~~d~i~~l~~G~i~~~~~~ 487 (510)
T PRK15439 408 NQQKVLIAKCLEASPQLLIVDEPTRGVDVSARNDIYQLIRSIAAQNVAVLFISSDLEEIEQMADRVLVMHQGEISGALTG 487 (510)
T ss_pred HHHHHHHHHHHhhCCCEEEECCCCcCcChhHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEEEcc
Confidence 99999999999999999999999999999999998876643 35899999999999986 5999999999999999988
Q ss_pred HHHH
Q 037346 564 SDIL 567 (1156)
Q Consensus 564 ~~l~ 567 (1156)
+++.
T Consensus 488 ~~~~ 491 (510)
T PRK15439 488 AAIN 491 (510)
T ss_pred ccCC
Confidence 7654
|
|
| >cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component | Back alignment and domain information |
|---|
Probab=99.97 E-value=4.4e-32 Score=292.03 Aligned_cols=182 Identities=27% Similarity=0.406 Sum_probs=161.8
Q ss_pred EEEEEEEEEEcCCCCceeeCCCCCCHHHHHHHHhhcccCCCceEEEcCeeCCCCChHHHhhcCeeeccccccccc-cchh
Q 037346 948 VNIRHLQVRYAPNLPLVLRGRTGSGKSTLIQTLFRIVESTAGHILIDGKDISLIGLHDLRTRLSIIPQDPTMFEG-TTRS 1026 (1156)
Q Consensus 948 I~~~~Vsf~Y~~~~~~vL~G~SGsGKSTL~~lL~rl~~p~~G~I~idG~di~~i~~~~LR~~i~~VpQdp~LF~g-TIr~ 1026 (1156)
..++|++|+..++ .++|.|+||||||||+++|.|+++|++|+|.++|.++.+.+ ..+|++++++||+|.+|.+ |+++
T Consensus 14 ~~l~~vs~~i~~g-~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~-~~~~~~i~~~~q~~~~~~~~tv~~ 91 (211)
T cd03264 14 RALDGVSLTLGPG-MYGLLGPNGAGKTTLMRILATLTPPSSGTIRIDGQDVLKQP-QKLRRRIGYLPQEFGVYPNFTVRE 91 (211)
T ss_pred EEEcceeEEEcCC-cEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCCccccch-HHHHhheEEecCCCcccccCCHHH
Confidence 5789999999988 88999999999999999999999999999999999998877 7789999999999999986 9999
Q ss_pred ccCCC---CCC----CHHHHHHHHHHcCCChHHHhhcCCcccc-------ccccccCCCEEEEecCCcCCCHHHHHHHHH
Q 037346 1027 NLDPL---EEH----ADEQIWEALDKCQLGDEVRKKKGKLDSQ-------GRVLLKKSKVLVLDEATASVDTATDNQIQQ 1092 (1156)
Q Consensus 1027 Nl~~~---~~~----~deei~~al~~~~l~~~i~~lp~gl~s~-------ARALLr~~~ILiLDEaTS~LD~~te~~I~~ 1092 (1156)
|+.+. ... .++++.++++.+++.+.....+..|..+ ||||+++|++|||||||++||+.+.+.+.+
T Consensus 92 ~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~ 171 (211)
T cd03264 92 FLDYIAWLKGIPSKEVKARVDEVLELVNLGDRAKKKIGSLSGGMRRRVGIAQALVGDPSILIVDEPTAGLDPEERIRFRN 171 (211)
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHHCCCHHHHhCchhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHH
Confidence 98642 111 1356889999999988777766666654 899999999999999999999999999999
Q ss_pred HHHHhcCCceEEEeecCccccc-ccCEEEEEeCcEEeeec
Q 037346 1093 TLRQHFSDCTVVTIAHRITSVL-DSAMVLLLNHGLIKEYD 1131 (1156)
Q Consensus 1093 ~l~~~~~~~TvI~IaHrl~ti~-~~D~I~Vl~~G~IvE~G 1131 (1156)
.|++..+++|+|+|||+++.+. -||+|++|++|+|++.|
T Consensus 172 ~l~~~~~~~tii~vsH~~~~~~~~~d~i~~l~~g~i~~~g 211 (211)
T cd03264 172 LLSELGEDRIVILSTHIVEDVESLCNQVAVLNKGKLVFEG 211 (211)
T ss_pred HHHHHhCCCEEEEEcCCHHHHHHhCCEEEEEECCEEEecC
Confidence 9998877799999999999986 49999999999999875
|
The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.5e-32 Score=269.02 Aligned_cols=188 Identities=24% Similarity=0.344 Sum_probs=165.0
Q ss_pred CeEEEEEEEEEEcCCCCceeeCCCCCCHHHHHHHHhhcccCCCceEEEcCeeCCCCCh---HHHhhcCeeecccccccc-
Q 037346 946 GEVNIRHLQVRYAPNLPLVLRGRTGSGKSTLIQTLFRIVESTAGHILIDGKDISLIGL---HDLRTRLSIIPQDPTMFE- 1021 (1156)
Q Consensus 946 g~I~~~~Vsf~Y~~~~~~vL~G~SGsGKSTL~~lL~rl~~p~~G~I~idG~di~~i~~---~~LR~~i~~VpQdp~LF~- 1021 (1156)
|...++||||..++++-.-|.|||||||||++++|++...|++|+|.++|.|++.+.- .-||++||+|+||--|..
T Consensus 14 g~~aL~~vs~~i~~Gef~fl~GpSGAGKSTllkLi~~~e~pt~G~i~~~~~dl~~l~~~~iP~LRR~IGvVFQD~rLL~~ 93 (223)
T COG2884 14 GREALRDVSFHIPKGEFVFLTGPSGAGKSTLLKLIYGEERPTRGKILVNGHDLSRLKGREIPFLRRQIGVVFQDFRLLPD 93 (223)
T ss_pred CchhhhCceEeecCceEEEEECCCCCCHHHHHHHHHhhhcCCCceEEECCeecccccccccchhhheeeeEeeecccccc
Confidence 3557788888888887767889999999999999999999999999999999998874 458999999999998775
Q ss_pred ccchhccCCC-----CC--CCHHHHHHHHHHcCCChHHHhhcCCcccc-------ccccccCCCEEEEecCCcCCCHHHH
Q 037346 1022 GTTRSNLDPL-----EE--HADEQIWEALDKCQLGDEVRKKKGKLDSQ-------GRVLLKKSKVLVLDEATASVDTATD 1087 (1156)
Q Consensus 1022 gTIr~Nl~~~-----~~--~~deei~~al~~~~l~~~i~~lp~gl~s~-------ARALLr~~~ILiLDEaTS~LD~~te 1087 (1156)
-|+.||+.+. .+ ...+++.++|+.+||.+-...+|..|..+ |||+..+|++||-||||-|||+++.
T Consensus 94 ~tvyeNVA~pL~v~G~~~~~i~~rV~~~L~~VgL~~k~~~lP~~LSGGEQQRvaIARAiV~~P~vLlADEPTGNLDp~~s 173 (223)
T COG2884 94 RTVYENVALPLRVIGKPPREIRRRVSEVLDLVGLKHKARALPSQLSGGEQQRVAIARAIVNQPAVLLADEPTGNLDPDLS 173 (223)
T ss_pred chHhhhhhhhhhccCCCHHHHHHHHHHHHHHhccchhhhcCccccCchHHHHHHHHHHHccCCCeEeecCCCCCCChHHH
Confidence 5999999752 11 12467899999999999999999988765 9999999999999999999999999
Q ss_pred HHHHHHHHHhc-CCceEEEeecCcccccccC-EEEEEeCcEEeeecCh
Q 037346 1088 NQIQQTLRQHF-SDCTVVTIAHRITSVLDSA-MVLLLNHGLIKEYDSP 1133 (1156)
Q Consensus 1088 ~~I~~~l~~~~-~~~TvI~IaHrl~ti~~~D-~I~Vl~~G~IvE~G~~ 1133 (1156)
..|++.+.+.- .|.|||+.||+.+.+..+. |++.+++|+++....+
T Consensus 174 ~~im~lfeeinr~GtTVl~ATHd~~lv~~~~~rvl~l~~Grl~~d~~~ 221 (223)
T COG2884 174 WEIMRLFEEINRLGTTVLMATHDLELVNRMRHRVLALEDGRLVRDESR 221 (223)
T ss_pred HHHHHHHHHHhhcCcEEEEEeccHHHHHhccCcEEEEeCCEEEecccc
Confidence 99999998764 4889999999999999877 9999999999987654
|
|
| >cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment | Back alignment and domain information |
|---|
Probab=99.97 E-value=6.2e-32 Score=297.08 Aligned_cols=194 Identities=25% Similarity=0.392 Sum_probs=169.9
Q ss_pred EEEEEEEEEEcCCCCceeeCCCCCCHHHHHHHHhhcccCCCceEEEcCeeCCCCChHHHhhcCeeecccccccc-ccchh
Q 037346 948 VNIRHLQVRYAPNLPLVLRGRTGSGKSTLIQTLFRIVESTAGHILIDGKDISLIGLHDLRTRLSIIPQDPTMFE-GTTRS 1026 (1156)
Q Consensus 948 I~~~~Vsf~Y~~~~~~vL~G~SGsGKSTL~~lL~rl~~p~~G~I~idG~di~~i~~~~LR~~i~~VpQdp~LF~-gTIr~ 1026 (1156)
-.++|++|...+++.++|.|+||||||||+++|+|+++|++|+|.+||.++...+...+|+.++|+||+|.+|. .|+++
T Consensus 15 ~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e 94 (242)
T cd03295 15 KAVNNLNLEIAKGEFLVLIGPSGSGKTTTMKMINRLIEPTSGEIFIDGEDIREQDPVELRRKIGYVIQQIGLFPHMTVEE 94 (242)
T ss_pred eEeeeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCeEcCcCChHHhhcceEEEccCccccCCCcHHH
Confidence 37899999999999999999999999999999999999999999999999998888888999999999999996 69999
Q ss_pred ccCCCC---CCC----HHHHHHHHHHcCCCh--HHHhhcCCcccc-------ccccccCCCEEEEecCCcCCCHHHHHHH
Q 037346 1027 NLDPLE---EHA----DEQIWEALDKCQLGD--EVRKKKGKLDSQ-------GRVLLKKSKVLVLDEATASVDTATDNQI 1090 (1156)
Q Consensus 1027 Nl~~~~---~~~----deei~~al~~~~l~~--~i~~lp~gl~s~-------ARALLr~~~ILiLDEaTS~LD~~te~~I 1090 (1156)
|+.+.. ... ++++.++++..++.+ .....+..|..+ |||++++|++|||||||++||+.+...+
T Consensus 95 ~l~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l 174 (242)
T cd03295 95 NIALVPKLLKWPKEKIRERADELLALVGLDPAEFADRYPHELSGGQQQRVGVARALAADPPLLLMDEPFGALDPITRDQL 174 (242)
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHcCCCcHHHHhcChhhCCHHHHHHHHHHHHHhcCCCEEEecCCcccCCHHHHHHH
Confidence 996431 111 356889999999985 666655555544 8999999999999999999999999999
Q ss_pred HHHHHHhcC--CceEEEeecCccccc-ccCEEEEEeCcEEeeecChhHHhcCCC
Q 037346 1091 QQTLRQHFS--DCTVVTIAHRITSVL-DSAMVLLLNHGLIKEYDSPTKLLENKS 1141 (1156)
Q Consensus 1091 ~~~l~~~~~--~~TvI~IaHrl~ti~-~~D~I~Vl~~G~IvE~G~~~eLl~~~~ 1141 (1156)
.+.|++..+ ++|+|++||+++.+. -||+|++|++|++++.|+++++.+...
T Consensus 175 ~~~L~~~~~~~g~tvii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~~~ 228 (242)
T cd03295 175 QEEFKRLQQELGKTIVFVTHDIDEAFRLADRIAIMKNGEIVQVGTPDEILRSPA 228 (242)
T ss_pred HHHHHHHHHHcCCEEEEEecCHHHHHHhCCEEEEEECCEEEEecCHHHHHcCCC
Confidence 999998753 789999999999765 599999999999999999999986543
|
ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids | Back alignment and domain information |
|---|
Probab=99.97 E-value=7.4e-32 Score=292.83 Aligned_cols=191 Identities=21% Similarity=0.361 Sum_probs=163.5
Q ss_pred EEEEEEEEEEcCCCCceeeCCCCCCHHHHHHHHhhcccCCCceEEEcCeeCCCCChHHH-hhcCeeeccccccccc-cch
Q 037346 948 VNIRHLQVRYAPNLPLVLRGRTGSGKSTLIQTLFRIVESTAGHILIDGKDISLIGLHDL-RTRLSIIPQDPTMFEG-TTR 1025 (1156)
Q Consensus 948 I~~~~Vsf~Y~~~~~~vL~G~SGsGKSTL~~lL~rl~~p~~G~I~idG~di~~i~~~~L-R~~i~~VpQdp~LF~g-TIr 1025 (1156)
..++|++|...+++.++|.|+||||||||+++|.|+++|++|+|.+||.++...+...+ |++++|+||++.+|.+ |++
T Consensus 14 ~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~t~~ 93 (222)
T cd03224 14 QILFGVSLTVPEGEIVALLGRNGAGKTTLLKTIMGLLPPRSGSIRFDGRDITGLPPHERARAGIGYVPEGRRIFPELTVE 93 (222)
T ss_pred eEeeeeeEEEcCCeEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcCCCCHHHHHhcCeEEeccccccCCCCcHH
Confidence 47999999999999999999999999999999999999999999999999988877654 6779999999999987 999
Q ss_pred hccCCCCC-C----CHHHHHHHHHHc-CCChHHHhhcCCcccc-------ccccccCCCEEEEecCCcCCCHHHHHHHHH
Q 037346 1026 SNLDPLEE-H----ADEQIWEALDKC-QLGDEVRKKKGKLDSQ-------GRVLLKKSKVLVLDEATASVDTATDNQIQQ 1092 (1156)
Q Consensus 1026 ~Nl~~~~~-~----~deei~~al~~~-~l~~~i~~lp~gl~s~-------ARALLr~~~ILiLDEaTS~LD~~te~~I~~ 1092 (1156)
+|+.+... . ..+++.++++.. ++.+.....+..|..+ ||||+++|++|||||||++||+++...+.+
T Consensus 94 ~~l~~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~ 173 (222)
T cd03224 94 ENLLLGAYARRRAKRKARLERVYELFPRLKERRKQLAGTLSGGEQQMLAIARALMSRPKLLLLDEPSEGLAPKIVEEIFE 173 (222)
T ss_pred HHHHHHhhhcCchhHHHHHHHHHHHHHhhhhhhhCchhhCCHHHHHHHHHHHHHhcCCCEEEECCCcccCCHHHHHHHHH
Confidence 99965321 1 133456677776 4655555555555544 899999999999999999999999999999
Q ss_pred HHHHhc-CCceEEEeecCcccccc-cCEEEEEeCcEEeeecChhHHhc
Q 037346 1093 TLRQHF-SDCTVVTIAHRITSVLD-SAMVLLLNHGLIKEYDSPTKLLE 1138 (1156)
Q Consensus 1093 ~l~~~~-~~~TvI~IaHrl~ti~~-~D~I~Vl~~G~IvE~G~~~eLl~ 1138 (1156)
.|++.. +++|+|++||+++.+.. ||+|++|++|++++.|+++++..
T Consensus 174 ~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~ 221 (222)
T cd03224 174 AIRELRDEGVTILLVEQNARFALEIADRAYVLERGRVVLEGTAAELLA 221 (222)
T ss_pred HHHHHHHCCCEEEEEeCCHHHHHHhccEEEEeeCCeEEEeCCHHHHhc
Confidence 998875 47899999999998755 99999999999999999988764
|
The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. |
| >PRK09452 potA putrescine/spermidine ABC transporter ATPase protein; Reviewed | Back alignment and domain information |
|---|
Probab=99.97 E-value=8.6e-32 Score=310.14 Aligned_cols=194 Identities=25% Similarity=0.375 Sum_probs=169.4
Q ss_pred EEEEEEEEEcCCCCceeeCCCCCCHHHHHHHHhhcccCCCceEEEcCeeCCCCChHHHhhcCeeeccccccccc-cchhc
Q 037346 949 NIRHLQVRYAPNLPLVLRGRTGSGKSTLIQTLFRIVESTAGHILIDGKDISLIGLHDLRTRLSIIPQDPTMFEG-TTRSN 1027 (1156)
Q Consensus 949 ~~~~Vsf~Y~~~~~~vL~G~SGsGKSTL~~lL~rl~~p~~G~I~idG~di~~i~~~~LR~~i~~VpQdp~LF~g-TIr~N 1027 (1156)
.++|++|...+++-++|.|+||||||||+++|+|+++|++|+|.+||.++.+++.+ ++++++|+|++.||.. |+++|
T Consensus 29 ~l~~vsl~i~~Ge~~~LlGpsGsGKSTLLr~IaGl~~p~~G~I~~~g~~i~~~~~~--~r~ig~vfQ~~~lfp~ltv~eN 106 (375)
T PRK09452 29 VISNLDLTINNGEFLTLLGPSGCGKTTVLRLIAGFETPDSGRIMLDGQDITHVPAE--NRHVNTVFQSYALFPHMTVFEN 106 (375)
T ss_pred EEeeeEEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCCCCHH--HCCEEEEecCcccCCCCCHHHH
Confidence 46667777777777788899999999999999999999999999999999887764 5789999999999965 99999
Q ss_pred cCCCC---CCC----HHHHHHHHHHcCCChHHHhhcCCcccc-------ccccccCCCEEEEecCCcCCCHHHHHHHHHH
Q 037346 1028 LDPLE---EHA----DEQIWEALDKCQLGDEVRKKKGKLDSQ-------GRVLLKKSKVLVLDEATASVDTATDNQIQQT 1093 (1156)
Q Consensus 1028 l~~~~---~~~----deei~~al~~~~l~~~i~~lp~gl~s~-------ARALLr~~~ILiLDEaTS~LD~~te~~I~~~ 1093 (1156)
|.++- ..+ ++++.++++.+++.++....|..|..+ ||||+++|++||||||||+||..+...+.+.
T Consensus 107 i~~~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~p~~LSgGq~QRVaLARaL~~~P~llLLDEP~s~LD~~~r~~l~~~ 186 (375)
T PRK09452 107 VAFGLRMQKTPAAEITPRVMEALRMVQLEEFAQRKPHQLSGGQQQRVAIARAVVNKPKVLLLDESLSALDYKLRKQMQNE 186 (375)
T ss_pred HHHHHhhcCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCcCCHHHHHHHHHH
Confidence 97532 122 346788999999999999988888765 8999999999999999999999999999999
Q ss_pred HHHhcC--CceEEEeecCccccc-ccCEEEEEeCcEEeeecChhHHhcCCCChH
Q 037346 1094 LRQHFS--DCTVVTIAHRITSVL-DSAMVLLLNHGLIKEYDSPTKLLENKSSSF 1144 (1156)
Q Consensus 1094 l~~~~~--~~TvI~IaHrl~ti~-~~D~I~Vl~~G~IvE~G~~~eLl~~~~g~f 1144 (1156)
|++..+ +.|+|+|||+++.+. -||+|+||++|+|++.|+|++++.++...|
T Consensus 187 L~~l~~~~g~tiI~vTHd~~ea~~laDri~vl~~G~i~~~g~~~~i~~~p~~~~ 240 (375)
T PRK09452 187 LKALQRKLGITFVFVTHDQEEALTMSDRIVVMRDGRIEQDGTPREIYEEPKNLF 240 (375)
T ss_pred HHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhCcccHH
Confidence 988754 789999999998765 599999999999999999999998765444
|
|
| >PRK14273 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=8.6e-32 Score=298.16 Aligned_cols=197 Identities=23% Similarity=0.366 Sum_probs=165.2
Q ss_pred EEEEEEEEEcCCCCceeeCCCCCCHHHHHHHHhhcccC-----CCceEEEcCeeCCC--CChHHHhhcCeeecccccccc
Q 037346 949 NIRHLQVRYAPNLPLVLRGRTGSGKSTLIQTLFRIVES-----TAGHILIDGKDISL--IGLHDLRTRLSIIPQDPTMFE 1021 (1156)
Q Consensus 949 ~~~~Vsf~Y~~~~~~vL~G~SGsGKSTL~~lL~rl~~p-----~~G~I~idG~di~~--i~~~~LR~~i~~VpQdp~LF~ 1021 (1156)
.++||+|+..+++.++|.|+||||||||+++|+|+++| ++|+|.+||.++.. .+...+|++++||||++.+|.
T Consensus 22 il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~~~~~ 101 (254)
T PRK14273 22 ALNNINIKILKNSITALIGPSGCGKSTFLRTLNRMNDLVEGIKIEGNVIYEGKNIYSNNFDILELRRKIGMVFQTPNPFL 101 (254)
T ss_pred eecceeeEEcCCCEEEEECCCCCCHHHHHHHHhccccCCcCCCCceEEEECCEecccccccHHHHhhceEEEeecccccc
Confidence 57788888888888889999999999999999999997 48999999999864 345678899999999999999
Q ss_pred ccchhccCCCCC----C----CHHHHHHHHHHcCCChH----HHhhcCCcccc-------ccccccCCCEEEEecCCcCC
Q 037346 1022 GTTRSNLDPLEE----H----ADEQIWEALDKCQLGDE----VRKKKGKLDSQ-------GRVLLKKSKVLVLDEATASV 1082 (1156)
Q Consensus 1022 gTIr~Nl~~~~~----~----~deei~~al~~~~l~~~----i~~lp~gl~s~-------ARALLr~~~ILiLDEaTS~L 1082 (1156)
.|+++|+.+... . .++.+.++++.+++.+. ....+..|..+ ||||+++|++|||||||++|
T Consensus 102 ~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LSgG~~qrv~laral~~~p~lllLDEPt~~L 181 (254)
T PRK14273 102 MSIYDNISYGPKIHGTKDKKKLDEIVEQSLKKSALWNEVKDKLNTNALSLSGGQQQRLCIARTLAIEPNVILMDEPTSAL 181 (254)
T ss_pred CcHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhCCchhhHHHHhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCCccc
Confidence 999999975311 1 13567888999988543 33334444433 89999999999999999999
Q ss_pred CHHHHHHHHHHHHHhcCCceEEEeecCcccccc-cCEEEEEeCcEEeeecChhHHhcCCCChHH
Q 037346 1083 DTATDNQIQQTLRQHFSDCTVVTIAHRITSVLD-SAMVLLLNHGLIKEYDSPTKLLENKSSSFA 1145 (1156)
Q Consensus 1083 D~~te~~I~~~l~~~~~~~TvI~IaHrl~ti~~-~D~I~Vl~~G~IvE~G~~~eLl~~~~g~f~ 1145 (1156)
|+.+...+.+.|+++.+++|+|+|||+++.+.. ||||++|++|+|++.|+++++.+++.-.|.
T Consensus 182 D~~~~~~l~~~l~~~~~~~tvii~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~~~~~~~ 245 (254)
T PRK14273 182 DPISTGKIEELIINLKESYTIIIVTHNMQQAGRISDRTAFFLNGCIEEESSTDELFFNPKNTKT 245 (254)
T ss_pred CHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHHhCCCChHH
Confidence 999999999999998778899999999998754 999999999999999999999876554443
|
|
| >PRK14244 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=6.5e-32 Score=298.59 Aligned_cols=198 Identities=22% Similarity=0.354 Sum_probs=168.9
Q ss_pred eEEEEEEEEEEcCCCCceeeCCCCCCHHHHHHHHhhccc-----CCCceEEEcCeeCCCCC--hHHHhhcCeeecccccc
Q 037346 947 EVNIRHLQVRYAPNLPLVLRGRTGSGKSTLIQTLFRIVE-----STAGHILIDGKDISLIG--LHDLRTRLSIIPQDPTM 1019 (1156)
Q Consensus 947 ~I~~~~Vsf~Y~~~~~~vL~G~SGsGKSTL~~lL~rl~~-----p~~G~I~idG~di~~i~--~~~LR~~i~~VpQdp~L 1019 (1156)
...++|++|+..+++.++|.|+||||||||+++|+|++. |++|+|.++|.++.+.+ ...+|++++||||++.+
T Consensus 18 ~~~l~~is~~i~~Ge~~~I~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~~~ 97 (251)
T PRK14244 18 KQILFDINLDIYKREVTAFIGPSGCGKSTFLRCFNRMNDFVPNCKVKGELDIDGIDVYSVDTNVVLLRAKVGMVFQKPNP 97 (251)
T ss_pred eeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccCCCCCcceEEEECCEehHhcccchHHHhhhEEEEecCccc
Confidence 357999999999999999999999999999999999986 47999999999987654 34678899999999999
Q ss_pred ccccchhccCCC---CC------CCHHHHHHHHHHcCCChH----HHhhcCCcccc-------ccccccCCCEEEEecCC
Q 037346 1020 FEGTTRSNLDPL---EE------HADEQIWEALDKCQLGDE----VRKKKGKLDSQ-------GRVLLKKSKVLVLDEAT 1079 (1156)
Q Consensus 1020 F~gTIr~Nl~~~---~~------~~deei~~al~~~~l~~~----i~~lp~gl~s~-------ARALLr~~~ILiLDEaT 1079 (1156)
|.+|+++|+.+. .. ..++++.++++.+++.+. +...+..|..+ ||||+++|+||||||||
T Consensus 98 ~~~tv~~ni~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~qrv~laral~~~p~llllDEPt 177 (251)
T PRK14244 98 FPKSIYDNVAYGPKLHGLAKNKKKLDEIVEKSLTSVGLWEELGDRLKDSAFELSGGQQQRLCIARAIAVKPTMLLMDEPC 177 (251)
T ss_pred ccCCHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHcCCCchhhhHhhcChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCC
Confidence 999999999642 11 123567889999999763 33344445443 89999999999999999
Q ss_pred cCCCHHHHHHHHHHHHHhcCCceEEEeecCcccccc-cCEEEEEeCcEEeeecChhHHhcCCCChH
Q 037346 1080 ASVDTATDNQIQQTLRQHFSDCTVVTIAHRITSVLD-SAMVLLLNHGLIKEYDSPTKLLENKSSSF 1144 (1156)
Q Consensus 1080 S~LD~~te~~I~~~l~~~~~~~TvI~IaHrl~ti~~-~D~I~Vl~~G~IvE~G~~~eLl~~~~g~f 1144 (1156)
++||+.+.+.+.+.|++..+++|+|+|||+++.+.. ||+|++|++|++++.|+++++++.+...|
T Consensus 178 ~~LD~~~~~~l~~~l~~~~~~~tiiiisH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~~~~~~ 243 (251)
T PRK14244 178 SALDPVATNVIENLIQELKKNFTIIVVTHSMKQAKKVSDRVAFFQSGRIVEYNTTQEIFKNPQSSK 243 (251)
T ss_pred ccCCHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHhhcCEEEEEECCEEEEeCCHHHHhcCCCChH
Confidence 999999999999999988778999999999999864 99999999999999999999997665544
|
|
| >PRK09536 btuD corrinoid ABC transporter ATPase; Reviewed | Back alignment and domain information |
|---|
Probab=99.97 E-value=9e-32 Score=311.45 Aligned_cols=200 Identities=22% Similarity=0.345 Sum_probs=174.9
Q ss_pred eEEEEEEEEEEcCCCCceeeCCCCCCHHHHHHHHhhcccCCCceEEEcCeeCCCCChHHHhhcCeeecccccc-ccccch
Q 037346 947 EVNIRHLQVRYAPNLPLVLRGRTGSGKSTLIQTLFRIVESTAGHILIDGKDISLIGLHDLRTRLSIIPQDPTM-FEGTTR 1025 (1156)
Q Consensus 947 ~I~~~~Vsf~Y~~~~~~vL~G~SGsGKSTL~~lL~rl~~p~~G~I~idG~di~~i~~~~LR~~i~~VpQdp~L-F~gTIr 1025 (1156)
...++|++|..++++.++|.||||||||||+++|.|+++|++|+|.++|.++.+++...+|++|++|||++.+ |+.|++
T Consensus 16 ~~vL~~vs~~i~~Geiv~liGpNGaGKSTLLk~LaGll~p~sG~I~l~G~~i~~~~~~~~~~~ig~v~q~~~l~~~~tv~ 95 (402)
T PRK09536 16 TTVLDGVDLSVREGSLVGLVGPNGAGKTTLLRAINGTLTPTAGTVLVAGDDVEALSARAASRRVASVPQDTSLSFEFDVR 95 (402)
T ss_pred EEEEEeeEEEECCCCEEEEECCCCchHHHHHHHHhcCCCCCCcEEEECCEEcCcCCHHHHhcceEEEccCCCCCCCCCHH
Confidence 4578999999999998899999999999999999999999999999999999999999999999999999987 678999
Q ss_pred hccCCCC-----------CCCHHHHHHHHHHcCCChHHHhhcCCcccc-------ccccccCCCEEEEecCCcCCCHHHH
Q 037346 1026 SNLDPLE-----------EHADEQIWEALDKCQLGDEVRKKKGKLDSQ-------GRVLLKKSKVLVLDEATASVDTATD 1087 (1156)
Q Consensus 1026 ~Nl~~~~-----------~~~deei~~al~~~~l~~~i~~lp~gl~s~-------ARALLr~~~ILiLDEaTS~LD~~te 1087 (1156)
+|+.++. ...++.+.++++.+++.++....+..|..+ ||||+++|+||||||||++||+.+.
T Consensus 96 e~v~~~~~~~~~~~~~~~~~~~~~v~~~le~vgl~~~~~~~~~~LSgGerQRv~IArAL~~~P~iLLLDEPtsgLD~~~~ 175 (402)
T PRK09536 96 QVVEMGRTPHRSRFDTWTETDRAAVERAMERTGVAQFADRPVTSLSGGERQRVLLARALAQATPVLLLDEPTASLDINHQ 175 (402)
T ss_pred HHHHhccchhcccccCCCHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHH
Confidence 9996532 112356899999999998877766666544 8999999999999999999999999
Q ss_pred HHHHHHHHHhc-CCceEEEeecCccccc-ccCEEEEEeCcEEeeecChhHHhcCCCChHHHHH
Q 037346 1088 NQIQQTLRQHF-SDCTVVTIAHRITSVL-DSAMVLLLNHGLIKEYDSPTKLLENKSSSFAQLV 1148 (1156)
Q Consensus 1088 ~~I~~~l~~~~-~~~TvI~IaHrl~ti~-~~D~I~Vl~~G~IvE~G~~~eLl~~~~g~f~~l~ 1148 (1156)
..+.+.|+++. +++|||+++|+++.+. .||||++|++|++++.|+|++++.. ..+.+++
T Consensus 176 ~~l~~lL~~l~~~g~TIIivsHdl~~~~~~adrii~l~~G~iv~~G~~~ev~~~--~~l~~~~ 236 (402)
T PRK09536 176 VRTLELVRRLVDDGKTAVAAIHDLDLAARYCDELVLLADGRVRAAGPPADVLTA--DTLRAAF 236 (402)
T ss_pred HHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEEEECCEEEEecCHHHHhCc--HHHHHHh
Confidence 99999999875 4789999999999994 6999999999999999999999853 3344444
|
|
| >PRK13642 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=7.8e-32 Score=301.57 Aligned_cols=192 Identities=20% Similarity=0.329 Sum_probs=171.7
Q ss_pred EEEEEEEEEEcCCCCceeeCCCCCCHHHHHHHHhhcccCCCceEEEcCeeCCCCChHHHhhcCeeecccc--ccccccch
Q 037346 948 VNIRHLQVRYAPNLPLVLRGRTGSGKSTLIQTLFRIVESTAGHILIDGKDISLIGLHDLRTRLSIIPQDP--TMFEGTTR 1025 (1156)
Q Consensus 948 I~~~~Vsf~Y~~~~~~vL~G~SGsGKSTL~~lL~rl~~p~~G~I~idG~di~~i~~~~LR~~i~~VpQdp--~LF~gTIr 1025 (1156)
..++||+|...+|+.++|.|+||||||||+++|+|+++|++|+|.+||.++.+.+...+|+.++||||+| .++..|+.
T Consensus 21 ~~l~~v~l~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~i~~~~~~~~~~~i~~v~q~~~~~~~~~tv~ 100 (277)
T PRK13642 21 NQLNGVSFSITKGEWVSIIGQNGSGKSTTARLIDGLFEEFEGKVKIDGELLTAENVWNLRRKIGMVFQNPDNQFVGATVE 100 (277)
T ss_pred eeeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCCEEEECCEECCcCCHHHHhcceEEEEECHHHhhccCCHH
Confidence 4789999999999989999999999999999999999999999999999999888888999999999998 47788999
Q ss_pred hccCCCC---CCCH----HHHHHHHHHcCCChHHHhhcCCcccc-------ccccccCCCEEEEecCCcCCCHHHHHHHH
Q 037346 1026 SNLDPLE---EHAD----EQIWEALDKCQLGDEVRKKKGKLDSQ-------GRVLLKKSKVLVLDEATASVDTATDNQIQ 1091 (1156)
Q Consensus 1026 ~Nl~~~~---~~~d----eei~~al~~~~l~~~i~~lp~gl~s~-------ARALLr~~~ILiLDEaTS~LD~~te~~I~ 1091 (1156)
+||.+.. ...+ +++.++++.+++.++....|..|..+ ||||+++|+||||||||++||+.+.+.+.
T Consensus 101 eni~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~lAraL~~~p~llllDEPt~~LD~~~~~~l~ 180 (277)
T PRK13642 101 DDVAFGMENQGIPREEMIKRVDEALLAVNMLDFKTREPARLSGGQKQRVAVAGIIALRPEIIILDESTSMLDPTGRQEIM 180 (277)
T ss_pred HHHHhhHHHcCCCHHHHHHHHHHHHHHCCCHhHhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHH
Confidence 9997431 1232 34678999999998888777777655 89999999999999999999999999999
Q ss_pred HHHHHhcC--CceEEEeecCcccccccCEEEEEeCcEEeeecChhHHhcC
Q 037346 1092 QTLRQHFS--DCTVVTIAHRITSVLDSAMVLLLNHGLIKEYDSPTKLLEN 1139 (1156)
Q Consensus 1092 ~~l~~~~~--~~TvI~IaHrl~ti~~~D~I~Vl~~G~IvE~G~~~eLl~~ 1139 (1156)
+.|+++.+ ++|+|+|||+++.+..||+|++|++|++++.|++++++..
T Consensus 181 ~~l~~l~~~~g~tiil~sH~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~ 230 (277)
T PRK13642 181 RVIHEIKEKYQLTVLSITHDLDEAASSDRILVMKAGEIIKEAAPSELFAT 230 (277)
T ss_pred HHHHHHHHhcCCEEEEEeCCHHHHHhCCEEEEEECCEEEEeCCHHHHhcC
Confidence 99988754 7899999999999988999999999999999999998864
|
|
| >TIGR03411 urea_trans_UrtD urea ABC transporter, ATP-binding protein UrtD | Back alignment and domain information |
|---|
Probab=99.97 E-value=1e-31 Score=295.54 Aligned_cols=192 Identities=24% Similarity=0.368 Sum_probs=169.4
Q ss_pred eEEEEEEEEEEcCCCCceeeCCCCCCHHHHHHHHhhcccCCCceEEEcCeeCCCCChHHH-hhcCeeeccccccccc-cc
Q 037346 947 EVNIRHLQVRYAPNLPLVLRGRTGSGKSTLIQTLFRIVESTAGHILIDGKDISLIGLHDL-RTRLSIIPQDPTMFEG-TT 1024 (1156)
Q Consensus 947 ~I~~~~Vsf~Y~~~~~~vL~G~SGsGKSTL~~lL~rl~~p~~G~I~idG~di~~i~~~~L-R~~i~~VpQdp~LF~g-TI 1024 (1156)
...++|++|+..+++.++|.|+||||||||+++|+|+++|++|+|.+||.++...+.... |+.++++||++.+|.+ |+
T Consensus 15 ~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv 94 (242)
T TIGR03411 15 FKALNDLSLYVDPGELRVIIGPNGAGKTTMMDVITGKTRPDEGSVLFGGTDLTGLPEHQIARAGIGRKFQKPTVFENLTV 94 (242)
T ss_pred eEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEECCeecCCCCHHHHHhcCeeEeccccccCCCCCH
Confidence 357999999999999999999999999999999999999999999999999988876654 4579999999999987 99
Q ss_pred hhccCCCCC------------C---CHHHHHHHHHHcCCChHHHhhcCCcccc-------ccccccCCCEEEEecCCcCC
Q 037346 1025 RSNLDPLEE------------H---ADEQIWEALDKCQLGDEVRKKKGKLDSQ-------GRVLLKKSKVLVLDEATASV 1082 (1156)
Q Consensus 1025 r~Nl~~~~~------------~---~deei~~al~~~~l~~~i~~lp~gl~s~-------ARALLr~~~ILiLDEaTS~L 1082 (1156)
++|+.+... . .++++.++++..++.+.....+..|..+ |||++++|++|||||||++|
T Consensus 95 ~~nl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Ge~qrv~laral~~~p~~lllDEPt~~L 174 (242)
T TIGR03411 95 FENLELALPRDKSVFASLFFRLSAEEKDRIEEVLETIGLADEADRLAGLLSHGQKQWLEIGMLLMQDPKLLLLDEPVAGM 174 (242)
T ss_pred HHHHHHhhhcccccccccccccHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEecCCccCC
Confidence 999965311 1 2346889999999987776666556544 89999999999999999999
Q ss_pred CHHHHHHHHHHHHHhcCCceEEEeecCcccccc-cCEEEEEeCcEEeeecChhHHhc
Q 037346 1083 DTATDNQIQQTLRQHFSDCTVVTIAHRITSVLD-SAMVLLLNHGLIKEYDSPTKLLE 1138 (1156)
Q Consensus 1083 D~~te~~I~~~l~~~~~~~TvI~IaHrl~ti~~-~D~I~Vl~~G~IvE~G~~~eLl~ 1138 (1156)
|+++...+.+.|+++.+++|+|++||+++.+.. ||+|++|++|++++.|+++++..
T Consensus 175 D~~~~~~l~~~l~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~g~~~~~~~~~~~~~ 231 (242)
T TIGR03411 175 TDEETEKTAELLKSLAGKHSVVVVEHDMEFVRSIADKVTVLHQGSVLAEGSLDQVQA 231 (242)
T ss_pred CHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEEEECCeEEeeCCHHHHhc
Confidence 999999999999988778899999999999875 99999999999999999999874
|
Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity. |
| >TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.2e-31 Score=293.69 Aligned_cols=191 Identities=24% Similarity=0.354 Sum_probs=167.3
Q ss_pred EEEEEEEEEEcCCCCceeeCCCCCCHHHHHHHHhhcccCCCceEEEcCeeCCCCChHHHhhcCeeecccccc-ccccchh
Q 037346 948 VNIRHLQVRYAPNLPLVLRGRTGSGKSTLIQTLFRIVESTAGHILIDGKDISLIGLHDLRTRLSIIPQDPTM-FEGTTRS 1026 (1156)
Q Consensus 948 I~~~~Vsf~Y~~~~~~vL~G~SGsGKSTL~~lL~rl~~p~~G~I~idG~di~~i~~~~LR~~i~~VpQdp~L-F~gTIr~ 1026 (1156)
..++||+|...+++.++|.|+||||||||+++|+|+++|++|+|.+||.++.+.+... +++++|+||++.+ +..|+++
T Consensus 15 ~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~i~~~~~~~-~~~i~~~~q~~~~~~~~t~~~ 93 (236)
T TIGR03864 15 RALDDVSFTVRPGEFVALLGPNGAGKSTLFSLLTRLYVAQEGQISVAGHDLRRAPRAA-LARLGVVFQQPTLDLDLSVRQ 93 (236)
T ss_pred EEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCEEcccCChhh-hhhEEEeCCCCCCcccCcHHH
Confidence 4799999999999999999999999999999999999999999999999998876544 4689999999987 5679999
Q ss_pred ccCCCC---CCC----HHHHHHHHHHcCCChHHHhhcCCcccc-------ccccccCCCEEEEecCCcCCCHHHHHHHHH
Q 037346 1027 NLDPLE---EHA----DEQIWEALDKCQLGDEVRKKKGKLDSQ-------GRVLLKKSKVLVLDEATASVDTATDNQIQQ 1092 (1156)
Q Consensus 1027 Nl~~~~---~~~----deei~~al~~~~l~~~i~~lp~gl~s~-------ARALLr~~~ILiLDEaTS~LD~~te~~I~~ 1092 (1156)
|+.+.. ... ++++.++++..++.+.....+..|..+ ||||+++|+||||||||++||+.+.+.+.+
T Consensus 94 ~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrl~laral~~~p~llllDEP~~~LD~~~~~~l~~ 173 (236)
T TIGR03864 94 NLRYHAALHGLSRAEARERIAALLARLGLAERADDKVRELNGGHRRRVEIARALLHRPALLLLDEPTVGLDPASRAAIVA 173 (236)
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHcCChhhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCccCCCHHHHHHHHH
Confidence 996431 111 345788899999987766666666544 899999999999999999999999999999
Q ss_pred HHHHhc--CCceEEEeecCcccccccCEEEEEeCcEEeeecChhHHhcC
Q 037346 1093 TLRQHF--SDCTVVTIAHRITSVLDSAMVLLLNHGLIKEYDSPTKLLEN 1139 (1156)
Q Consensus 1093 ~l~~~~--~~~TvI~IaHrl~ti~~~D~I~Vl~~G~IvE~G~~~eLl~~ 1139 (1156)
.|+++. +++|+|++||+++.+..||+|++|++|++++.|+++++.++
T Consensus 174 ~l~~~~~~~~~tiii~sH~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~ 222 (236)
T TIGR03864 174 HVRALCRDQGLSVLWATHLVDEIEADDRLVVLHRGRVLADGAAAELRGA 222 (236)
T ss_pred HHHHHHHhCCCEEEEEecChhhHhhCCEEEEEeCCeEEEeCCHHHHHHH
Confidence 999875 37899999999999988999999999999999999999864
|
Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification. |
| >cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids | Back alignment and domain information |
|---|
Probab=99.97 E-value=7.1e-32 Score=278.19 Aligned_cols=149 Identities=22% Similarity=0.240 Sum_probs=130.2
Q ss_pred eeeEEEeCCCCCCCccccceEEeeCCeEEEEEcCCCCChHHHHHHHhCCCCCCCcEEEEcCe-EEEEecCCcCCCccHHH
Q 037346 361 IDGSFSWDFSSPNPTLRNINLKVFHGMRVAVCGTVGSGKSSCLSCILGGVPKESGIIRLCGT-KAYVAQSPWIQSGKIEE 439 (1156)
Q Consensus 361 ~~~~f~~~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKSTll~~i~g~~~~~~G~i~~~g~-~~~v~Q~~~~~~~ti~e 439 (1156)
.|+++.|+ +.+++++ +|++++||+++|+||||||||||+++|+|+++|++|+|.++|. ++|++|++.
T Consensus 4 ~~l~~~~~---~~~~l~~-~~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~q~~~-------- 71 (177)
T cd03222 4 PDCVKRYG---VFFLLVE-LGVVKEGEVIGIVGPNGTGKTTAVKILAGQLIPNGDNDEWDGITPVYKPQYID-------- 71 (177)
T ss_pred CCeEEEEC---CEEEEcc-CcEECCCCEEEEECCCCChHHHHHHHHHcCCCCCCcEEEECCEEEEEEcccCC--------
Confidence 57888995 3568888 4999999999999999999999999999999999999999984 799988652
Q ss_pred HhhcCCCCCHHHHHHHHHHhCCchhhhhCCCCCccccccCCCCCCHHHHHHHHHHHhhccCCCeeeeeCCCCCcCHHHHH
Q 037346 440 NILFGKEMDRERYERVLEACSLKKDLEVLPFGDQTIIGERGINLSGGQKQRIQIARPLYQDADIFLLDDPFSPVDDHTGA 519 (1156)
Q Consensus 440 ni~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~t~v~~~g~~LSgGqkqRi~lAral~~~~~illlDep~s~lD~~~~~ 519 (1156)
||||||||++||||++.+|+++||||||++||+.+++
T Consensus 72 -------------------------------------------LSgGq~qrv~laral~~~p~lllLDEPts~LD~~~~~ 108 (177)
T cd03222 72 -------------------------------------------LSGGELQRVAIAAALLRNATFYLFDEPSAYLDIEQRL 108 (177)
T ss_pred -------------------------------------------CCHHHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHH
Confidence 9999999999999999999999999999999999999
Q ss_pred HHHHHHHh--cC-CCEEEEEccCCCccc-cCCEEEEEeCCeEEEc--cChH
Q 037346 520 HLFKFCWV--SS-SKTVIYATHQVEFLP-AADLILVIKDGKITQA--GKYS 564 (1156)
Q Consensus 520 ~i~~~~~~--~~-~~tvi~vtH~~~~~~-~~d~i~~l~~G~i~~~--g~~~ 564 (1156)
.+.+.+.. .+ ++|+|++||+++.+. .||++++|+++-.+.+ |.+.
T Consensus 109 ~l~~~l~~~~~~~~~tiiivsH~~~~~~~~~d~i~~l~~~~~~~~~~~~~~ 159 (177)
T cd03222 109 NAARAIRRLSEEGKKTALVVEHDLAVLDYLSDRIHVFEGEPGVYGIASQPK 159 (177)
T ss_pred HHHHHHHHHHHcCCCEEEEEECCHHHHHHhCCEEEEEcCCCccceeccCCc
Confidence 88776643 34 489999999999987 5999999998765533 4444
|
RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology. |
| >PRK13632 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=8.7e-32 Score=300.41 Aligned_cols=192 Identities=22% Similarity=0.369 Sum_probs=169.9
Q ss_pred EEEEEEEEEEcCCCCceeeCCCCCCHHHHHHHHhhcccCCCceEEEcCeeCCCCChHHHhhcCeeecccc--ccccccch
Q 037346 948 VNIRHLQVRYAPNLPLVLRGRTGSGKSTLIQTLFRIVESTAGHILIDGKDISLIGLHDLRTRLSIIPQDP--TMFEGTTR 1025 (1156)
Q Consensus 948 I~~~~Vsf~Y~~~~~~vL~G~SGsGKSTL~~lL~rl~~p~~G~I~idG~di~~i~~~~LR~~i~~VpQdp--~LF~gTIr 1025 (1156)
..|+|++|...+++.++|.|+||||||||+++|+|+++|++|+|.+||.++...+...+|++++|+||+| .++..|++
T Consensus 23 ~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~i~~v~q~~~~~~~~~tv~ 102 (271)
T PRK13632 23 NALKNVSFEINEGEYVAILGHNGSGKSTISKILTGLLKPQSGEIKIDGITISKENLKEIRKKIGIIFQNPDNQFIGATVE 102 (271)
T ss_pred cceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEecCcCCHHHHhcceEEEEeCHHHhcCcccHH
Confidence 4688999998888888999999999999999999999999999999999998888888999999999998 45577999
Q ss_pred hccCCCC---CCCH----HHHHHHHHHcCCChHHHhhcCCcccc-------ccccccCCCEEEEecCCcCCCHHHHHHHH
Q 037346 1026 SNLDPLE---EHAD----EQIWEALDKCQLGDEVRKKKGKLDSQ-------GRVLLKKSKVLVLDEATASVDTATDNQIQ 1091 (1156)
Q Consensus 1026 ~Nl~~~~---~~~d----eei~~al~~~~l~~~i~~lp~gl~s~-------ARALLr~~~ILiLDEaTS~LD~~te~~I~ 1091 (1156)
+|+.+.. ..+. +.+.++++.+++.++....+..|..+ ||||+++|++|||||||++||+.+.+.+.
T Consensus 103 enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~lllLDEP~~gLD~~~~~~l~ 182 (271)
T PRK13632 103 DDIAFGLENKKVPPKKMKDIIDDLAKKVGMEDYLDKEPQNLSGGQKQRVAIASVLALNPEIIIFDESTSMLDPKGKREIK 182 (271)
T ss_pred HHHHhHHHHcCCCHHHHHHHHHHHHHHcCCHHHhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHH
Confidence 9997531 1222 34678899999998888888777655 89999999999999999999999999999
Q ss_pred HHHHHhcC--CceEEEeecCcccccccCEEEEEeCcEEeeecChhHHhcC
Q 037346 1092 QTLRQHFS--DCTVVTIAHRITSVLDSAMVLLLNHGLIKEYDSPTKLLEN 1139 (1156)
Q Consensus 1092 ~~l~~~~~--~~TvI~IaHrl~ti~~~D~I~Vl~~G~IvE~G~~~eLl~~ 1139 (1156)
+.|++..+ ++|+|++||+++.+..||+|++|++|++++.|+++++.++
T Consensus 183 ~~l~~~~~~~~~tiii~sH~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~ 232 (271)
T PRK13632 183 KIMVDLRKTRKKTLISITHDMDEAILADKVIVFSEGKLIAQGKPKEILNN 232 (271)
T ss_pred HHHHHHHHhcCcEEEEEEechhHHhhCCEEEEEECCEEEEecCHHHHhcC
Confidence 99998753 4899999999998889999999999999999999998764
|
|
| >PRK13636 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=8.2e-32 Score=302.16 Aligned_cols=192 Identities=26% Similarity=0.372 Sum_probs=168.2
Q ss_pred EEEEEEEEEEcCCCCceeeCCCCCCHHHHHHHHhhcccCCCceEEEcCeeCC--CCChHHHhhcCeeecccc--cccccc
Q 037346 948 VNIRHLQVRYAPNLPLVLRGRTGSGKSTLIQTLFRIVESTAGHILIDGKDIS--LIGLHDLRTRLSIIPQDP--TMFEGT 1023 (1156)
Q Consensus 948 I~~~~Vsf~Y~~~~~~vL~G~SGsGKSTL~~lL~rl~~p~~G~I~idG~di~--~i~~~~LR~~i~~VpQdp--~LF~gT 1023 (1156)
-.++||+|...+|+.++|.|+||||||||+++|+|+++|++|+|.+||.++. ..+...+|++++|+||+| .+|+.|
T Consensus 20 ~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~i~Gl~~p~~G~i~i~g~~~~~~~~~~~~~~~~ig~v~q~~~~~~~~~t 99 (283)
T PRK13636 20 HALKGININIKKGEVTAILGGNGAGKSTLFQNLNGILKPSSGRILFDGKPIDYSRKGLMKLRESVGMVFQDPDNQLFSAS 99 (283)
T ss_pred eeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCccEEEECCEECCCCcchHHHHHhhEEEEecCcchhhcccc
Confidence 4788888888888888999999999999999999999999999999999984 345677899999999998 578999
Q ss_pred chhccCCCC---CCC----HHHHHHHHHHcCCChHHHhhcCCcccc-------ccccccCCCEEEEecCCcCCCHHHHHH
Q 037346 1024 TRSNLDPLE---EHA----DEQIWEALDKCQLGDEVRKKKGKLDSQ-------GRVLLKKSKVLVLDEATASVDTATDNQ 1089 (1156)
Q Consensus 1024 Ir~Nl~~~~---~~~----deei~~al~~~~l~~~i~~lp~gl~s~-------ARALLr~~~ILiLDEaTS~LD~~te~~ 1089 (1156)
+++|+.+.. ..+ ++.+.++++.+++.++....+..|..+ ||||+.+|+||||||||++||+++...
T Consensus 100 v~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LS~G~~qrl~laraL~~~p~lLilDEPt~gLD~~~~~~ 179 (283)
T PRK13636 100 VYQDVSFGAVNLKLPEDEVRKRVDNALKRTGIEHLKDKPTHCLSFGQKKRVAIAGVLVMEPKVLVLDEPTAGLDPMGVSE 179 (283)
T ss_pred HHHHHHhHHHHcCCCHHHHHHHHHHHHHHCCChhhhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHH
Confidence 999997521 122 245788899999998877777666655 899999999999999999999999999
Q ss_pred HHHHHHHhcC--CceEEEeecCccccc-ccCEEEEEeCcEEeeecChhHHhcC
Q 037346 1090 IQQTLRQHFS--DCTVVTIAHRITSVL-DSAMVLLLNHGLIKEYDSPTKLLEN 1139 (1156)
Q Consensus 1090 I~~~l~~~~~--~~TvI~IaHrl~ti~-~~D~I~Vl~~G~IvE~G~~~eLl~~ 1139 (1156)
+.+.|+++.+ ++|||++||+++.+. .||+|++|++|++++.|+++++++.
T Consensus 180 l~~~l~~l~~~~g~tillvsH~~~~~~~~~dri~~l~~G~i~~~g~~~~~~~~ 232 (283)
T PRK13636 180 IMKLLVEMQKELGLTIIIATHDIDIVPLYCDNVFVMKEGRVILQGNPKEVFAE 232 (283)
T ss_pred HHHHHHHHHHhCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEeCCHHHHhcC
Confidence 9999988754 789999999999987 6999999999999999999998863
|
|
| >PRK11000 maltose/maltodextrin transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=8.8e-32 Score=311.34 Aligned_cols=195 Identities=18% Similarity=0.316 Sum_probs=170.9
Q ss_pred EEEEEEEEEEcCCCCceeeCCCCCCHHHHHHHHhhcccCCCceEEEcCeeCCCCChHHHhhcCeeeccccccccc-cchh
Q 037346 948 VNIRHLQVRYAPNLPLVLRGRTGSGKSTLIQTLFRIVESTAGHILIDGKDISLIGLHDLRTRLSIIPQDPTMFEG-TTRS 1026 (1156)
Q Consensus 948 I~~~~Vsf~Y~~~~~~vL~G~SGsGKSTL~~lL~rl~~p~~G~I~idG~di~~i~~~~LR~~i~~VpQdp~LF~g-TIr~ 1026 (1156)
..++|++|...+++.++|.|+||||||||+++|+|+++|++|+|.+||.++.+.+.. +++++||||++.+|.. |+++
T Consensus 17 ~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLL~~iaGl~~p~~G~I~~~g~~i~~~~~~--~~~i~~v~Q~~~l~~~~tv~e 94 (369)
T PRK11000 17 VISKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLEDITSGDLFIGEKRMNDVPPA--ERGVGMVFQSYALYPHLSVAE 94 (369)
T ss_pred EEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCCCCHh--HCCEEEEeCCcccCCCCCHHH
Confidence 478999999999988899999999999999999999999999999999999877653 5689999999999965 9999
Q ss_pred ccCCCC---CCC----HHHHHHHHHHcCCChHHHhhcCCcccc-------ccccccCCCEEEEecCCcCCCHHHHHHHHH
Q 037346 1027 NLDPLE---EHA----DEQIWEALDKCQLGDEVRKKKGKLDSQ-------GRVLLKKSKVLVLDEATASVDTATDNQIQQ 1092 (1156)
Q Consensus 1027 Nl~~~~---~~~----deei~~al~~~~l~~~i~~lp~gl~s~-------ARALLr~~~ILiLDEaTS~LD~~te~~I~~ 1092 (1156)
|+.+.. ..+ ++++.++++.+++.++....|..|..+ ||||+++|+|||||||||+||+.+.+.+.+
T Consensus 95 ni~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~~~~~~LSgGq~QRvaLAraL~~~P~lLLLDEPts~LD~~~~~~l~~ 174 (369)
T PRK11000 95 NMSFGLKLAGAKKEEINQRVNQVAEVLQLAHLLDRKPKALSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAALRVQMRI 174 (369)
T ss_pred HHHhHHhhcCCCHHHHHHHHHHHHHHcCChhhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHH
Confidence 997531 112 356889999999998888888777755 899999999999999999999999999999
Q ss_pred HHHHhcC--CceEEEeecCccccc-ccCEEEEEeCcEEeeecChhHHhcCCCChH
Q 037346 1093 TLRQHFS--DCTVVTIAHRITSVL-DSAMVLLLNHGLIKEYDSPTKLLENKSSSF 1144 (1156)
Q Consensus 1093 ~l~~~~~--~~TvI~IaHrl~ti~-~~D~I~Vl~~G~IvE~G~~~eLl~~~~g~f 1144 (1156)
.|++..+ +.|+|+|||+++.+. -||+|++|++|+|++.|+|+++..++...|
T Consensus 175 ~L~~l~~~~g~tvI~vTHd~~~~~~~~d~i~vl~~G~i~~~g~~~~i~~~p~~~~ 229 (369)
T PRK11000 175 EISRLHKRLGRTMIYVTHDQVEAMTLADKIVVLDAGRVAQVGKPLELYHYPANRF 229 (369)
T ss_pred HHHHHHHHhCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhCcccHH
Confidence 9988643 789999999998775 599999999999999999999987665443
|
|
| >TIGR01188 drrA daunorubicin resistance ABC transporter ATP-binding subunit | Back alignment and domain information |
|---|
Probab=99.97 E-value=8.4e-32 Score=304.97 Aligned_cols=191 Identities=24% Similarity=0.365 Sum_probs=168.6
Q ss_pred EEEEEEEEEEcCCCCceeeCCCCCCHHHHHHHHhhcccCCCceEEEcCeeCCCCChHHHhhcCeeeccccccccc-cchh
Q 037346 948 VNIRHLQVRYAPNLPLVLRGRTGSGKSTLIQTLFRIVESTAGHILIDGKDISLIGLHDLRTRLSIIPQDPTMFEG-TTRS 1026 (1156)
Q Consensus 948 I~~~~Vsf~Y~~~~~~vL~G~SGsGKSTL~~lL~rl~~p~~G~I~idG~di~~i~~~~LR~~i~~VpQdp~LF~g-TIr~ 1026 (1156)
..++||||..++++.++|.||||||||||+++|+|+++|++|+|.++|.++.. ....+|++++++||++.+|.. |+++
T Consensus 7 ~~l~~vs~~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~-~~~~~~~~i~~~~q~~~~~~~~tv~e 85 (302)
T TIGR01188 7 KAVDGVNFKVREGEVFGFLGPNGAGKTTTIRMLTTLLRPTSGTARVAGYDVVR-EPRKVRRSIGIVPQYASVDEDLTGRE 85 (302)
T ss_pred eEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccc-CHHHHHhhcEEecCCCCCCCCCcHHH
Confidence 47999999999999999999999999999999999999999999999999976 345778999999999999976 9999
Q ss_pred ccCCCC---CC----CHHHHHHHHHHcCCChHHHhhcCCcccc-------ccccccCCCEEEEecCCcCCCHHHHHHHHH
Q 037346 1027 NLDPLE---EH----ADEQIWEALDKCQLGDEVRKKKGKLDSQ-------GRVLLKKSKVLVLDEATASVDTATDNQIQQ 1092 (1156)
Q Consensus 1027 Nl~~~~---~~----~deei~~al~~~~l~~~i~~lp~gl~s~-------ARALLr~~~ILiLDEaTS~LD~~te~~I~~ 1092 (1156)
|+.+.. .. .++++.++++.+++.+.....+..|..+ ||||+++|++|||||||++||+++.+.+.+
T Consensus 86 ~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~gLD~~~~~~l~~ 165 (302)
T TIGR01188 86 NLEMMGRLYGLPKDEAEERAEELLELFELGEAADRPVGTYSGGMRRRLDIAASLIHQPDVLFLDEPTTGLDPRTRRAIWD 165 (302)
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHcCChhHhCCchhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHH
Confidence 996421 11 1346889999999987776666666544 899999999999999999999999999999
Q ss_pred HHHHhc-CCceEEEeecCcccccc-cCEEEEEeCcEEeeecChhHHhcC
Q 037346 1093 TLRQHF-SDCTVVTIAHRITSVLD-SAMVLLLNHGLIKEYDSPTKLLEN 1139 (1156)
Q Consensus 1093 ~l~~~~-~~~TvI~IaHrl~ti~~-~D~I~Vl~~G~IvE~G~~~eLl~~ 1139 (1156)
.|++.. +++|||++||+++.+.. ||+|++|++|+|++.|+++++.++
T Consensus 166 ~l~~~~~~g~tvi~~sH~~~~~~~~~d~v~~l~~G~i~~~g~~~~l~~~ 214 (302)
T TIGR01188 166 YIRALKEEGVTILLTTHYMEEADKLCDRIAIIDHGRIIAEGTPEELKRR 214 (302)
T ss_pred HHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEECCHHHHHHh
Confidence 998874 47899999999999875 999999999999999999998754
|
This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc. |
| >cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota | Back alignment and domain information |
|---|
Probab=99.97 E-value=8.5e-32 Score=288.34 Aligned_cols=178 Identities=24% Similarity=0.352 Sum_probs=158.7
Q ss_pred EEEEEEEEEEcCCCCceeeCCCCCCHHHHHHHHhhcccCCCceEEEcCeeCCCCChHHHhhcCeeecccc--ccccccch
Q 037346 948 VNIRHLQVRYAPNLPLVLRGRTGSGKSTLIQTLFRIVESTAGHILIDGKDISLIGLHDLRTRLSIIPQDP--TMFEGTTR 1025 (1156)
Q Consensus 948 I~~~~Vsf~Y~~~~~~vL~G~SGsGKSTL~~lL~rl~~p~~G~I~idG~di~~i~~~~LR~~i~~VpQdp--~LF~gTIr 1025 (1156)
-.++|++|+..+++.++|.|+||||||||+++|+|+++|++|+|.+||.++.. ...|++++|+||+| .+|..|++
T Consensus 14 ~~l~~v~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~---~~~~~~i~~~~q~~~~~~~~~tv~ 90 (205)
T cd03226 14 EILDDLSLDLYAGEIIALTGKNGAGKTTLAKILAGLIKESSGSILLNGKPIKA---KERRKSIGYVMQDVDYQLFTDSVR 90 (205)
T ss_pred ceeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEhhh---HHhhcceEEEecChhhhhhhccHH
Confidence 47999999999999999999999999999999999999999999999999864 45678899999998 46789999
Q ss_pred hccCCCCC---CCHHHHHHHHHHcCCChHHHhhcCCcccc-------ccccccCCCEEEEecCCcCCCHHHHHHHHHHHH
Q 037346 1026 SNLDPLEE---HADEQIWEALDKCQLGDEVRKKKGKLDSQ-------GRVLLKKSKVLVLDEATASVDTATDNQIQQTLR 1095 (1156)
Q Consensus 1026 ~Nl~~~~~---~~deei~~al~~~~l~~~i~~lp~gl~s~-------ARALLr~~~ILiLDEaTS~LD~~te~~I~~~l~ 1095 (1156)
||+.+... ..++++.++++.+++.++....|..|..+ ||||+++|++|||||||++||+++.+.+.+.|+
T Consensus 91 e~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~ 170 (205)
T cd03226 91 EELLLGLKELDAGNEQAETVLKDLDLYALKERHPLSLSGGQKQRLAIAAALLSGKDLLIFDEPTSGLDYKNMERVGELIR 170 (205)
T ss_pred HHHhhhhhhcCccHHHHHHHHHHcCCchhcCCCchhCCHHHHHHHHHHHHHHhCCCEEEEeCCCccCCHHHHHHHHHHHH
Confidence 99975321 22457899999999999888888877765 899999999999999999999999999999998
Q ss_pred Hh-cCCceEEEeecCcccccc-cCEEEEEeCcEEe
Q 037346 1096 QH-FSDCTVVTIAHRITSVLD-SAMVLLLNHGLIK 1128 (1156)
Q Consensus 1096 ~~-~~~~TvI~IaHrl~ti~~-~D~I~Vl~~G~Iv 1128 (1156)
+. .+++|+|++||+++.+.. ||+|++|++|++|
T Consensus 171 ~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~iv 205 (205)
T cd03226 171 ELAAQGKAVIVITHDYEFLAKVCDRVLLLANGAIV 205 (205)
T ss_pred HHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEEC
Confidence 87 357899999999999875 9999999999985
|
The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems. |
| >PRK13652 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=9.8e-32 Score=300.77 Aligned_cols=192 Identities=22% Similarity=0.333 Sum_probs=171.9
Q ss_pred EEEEEEEEEEcCCCCceeeCCCCCCHHHHHHHHhhcccCCCceEEEcCeeCCCCChHHHhhcCeeecccc--ccccccch
Q 037346 948 VNIRHLQVRYAPNLPLVLRGRTGSGKSTLIQTLFRIVESTAGHILIDGKDISLIGLHDLRTRLSIIPQDP--TMFEGTTR 1025 (1156)
Q Consensus 948 I~~~~Vsf~Y~~~~~~vL~G~SGsGKSTL~~lL~rl~~p~~G~I~idG~di~~i~~~~LR~~i~~VpQdp--~LF~gTIr 1025 (1156)
..++||+|...+|+.++|.|+||||||||+++|+|+++|++|+|.+||.++...+...+++++++|||+| .+|+.|++
T Consensus 18 ~~l~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~~tv~ 97 (277)
T PRK13652 18 EALNNINFIAPRNSRIAVIGPNGAGKSTLFRHFNGILKPTSGSVLIRGEPITKENIREVRKFVGLVFQNPDDQIFSPTVE 97 (277)
T ss_pred ceeeEeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHHhheEEEecCcccccccccHH
Confidence 3789999999999999999999999999999999999999999999999998888888999999999998 47888999
Q ss_pred hccCCCC---CCC----HHHHHHHHHHcCCChHHHhhcCCcccc-------ccccccCCCEEEEecCCcCCCHHHHHHHH
Q 037346 1026 SNLDPLE---EHA----DEQIWEALDKCQLGDEVRKKKGKLDSQ-------GRVLLKKSKVLVLDEATASVDTATDNQIQ 1091 (1156)
Q Consensus 1026 ~Nl~~~~---~~~----deei~~al~~~~l~~~i~~lp~gl~s~-------ARALLr~~~ILiLDEaTS~LD~~te~~I~ 1091 (1156)
+|+.+.. ..+ ++.+.++++.+++.+.....|..|..+ ||||+.+|++|||||||++||+.+.+.+.
T Consensus 98 ~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Gq~qrl~laraL~~~p~llilDEPt~gLD~~~~~~l~ 177 (277)
T PRK13652 98 QDIAFGPINLGLDEETVAHRVSSALHMLGLEELRDRVPHHLSGGEKKRVAIAGVIAMEPQVLVLDEPTAGLDPQGVKELI 177 (277)
T ss_pred HHHHhHHHHcCCCHHHHHHHHHHHHHHCCChhHhcCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHH
Confidence 9996421 122 345789999999998888888777765 89999999999999999999999999999
Q ss_pred HHHHHhcC--CceEEEeecCccccc-ccCEEEEEeCcEEeeecChhHHhcC
Q 037346 1092 QTLRQHFS--DCTVVTIAHRITSVL-DSAMVLLLNHGLIKEYDSPTKLLEN 1139 (1156)
Q Consensus 1092 ~~l~~~~~--~~TvI~IaHrl~ti~-~~D~I~Vl~~G~IvE~G~~~eLl~~ 1139 (1156)
+.|++..+ ++|||++||+++.+. .||+|++|++|++++.|+++++++.
T Consensus 178 ~~l~~l~~~~g~tvli~tH~~~~~~~~~drv~~l~~G~i~~~g~~~~~~~~ 228 (277)
T PRK13652 178 DFLNDLPETYGMTVIFSTHQLDLVPEMADYIYVMDKGRIVAYGTVEEIFLQ 228 (277)
T ss_pred HHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEECCeEEEECCHHHHhcC
Confidence 99988753 789999999999984 6999999999999999999999864
|
|
| >PRK13648 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=9.7e-32 Score=299.89 Aligned_cols=192 Identities=20% Similarity=0.371 Sum_probs=169.6
Q ss_pred EEEEEEEEEEcCCCCceeeCCCCCCHHHHHHHHhhcccCCCceEEEcCeeCCCCChHHHhhcCeeeccccc--cccccch
Q 037346 948 VNIRHLQVRYAPNLPLVLRGRTGSGKSTLIQTLFRIVESTAGHILIDGKDISLIGLHDLRTRLSIIPQDPT--MFEGTTR 1025 (1156)
Q Consensus 948 I~~~~Vsf~Y~~~~~~vL~G~SGsGKSTL~~lL~rl~~p~~G~I~idG~di~~i~~~~LR~~i~~VpQdp~--LF~gTIr 1025 (1156)
..++|++|...+++.++|.|+||||||||+++|+|+++|++|+|.+||.++.+.+...+|++++++||+|. ++..|++
T Consensus 23 ~~l~~isl~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~v~ 102 (269)
T PRK13648 23 FTLKDVSFNIPKGQWTSIVGHNGSGKSTIAKLMIGIEKVKSGEIFYNNQAITDDNFEKLRKHIGIVFQNPDNQFVGSIVK 102 (269)
T ss_pred cceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHHhheeEEEeChHHhcccccHH
Confidence 46888888888888889999999999999999999999999999999999998888889999999999994 4456889
Q ss_pred hccCCCC---CC----CHHHHHHHHHHcCCChHHHhhcCCcccc-------ccccccCCCEEEEecCCcCCCHHHHHHHH
Q 037346 1026 SNLDPLE---EH----ADEQIWEALDKCQLGDEVRKKKGKLDSQ-------GRVLLKKSKVLVLDEATASVDTATDNQIQ 1091 (1156)
Q Consensus 1026 ~Nl~~~~---~~----~deei~~al~~~~l~~~i~~lp~gl~s~-------ARALLr~~~ILiLDEaTS~LD~~te~~I~ 1091 (1156)
+|+.+.. .. .++++.++++.+++.++....+..|..+ |||++++|++|||||||++||+.+.+.+.
T Consensus 103 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~lllLDEPt~~LD~~~~~~l~ 182 (269)
T PRK13648 103 YDVAFGLENHAVPYDEMHRRVSEALKQVDMLERADYEPNALSGGQKQRVAIAGVLALNPSVIILDEATSMLDPDARQNLL 182 (269)
T ss_pred HHHHhhHHhcCCCHHHHHHHHHHHHHHcCCchhhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHH
Confidence 9986431 11 1356788999999988888777777655 89999999999999999999999999999
Q ss_pred HHHHHhcC--CceEEEeecCcccccccCEEEEEeCcEEeeecChhHHhcC
Q 037346 1092 QTLRQHFS--DCTVVTIAHRITSVLDSAMVLLLNHGLIKEYDSPTKLLEN 1139 (1156)
Q Consensus 1092 ~~l~~~~~--~~TvI~IaHrl~ti~~~D~I~Vl~~G~IvE~G~~~eLl~~ 1139 (1156)
+.|++..+ ++|+|+|||+++.+..||+|++|++|+|++.|+++++..+
T Consensus 183 ~~L~~~~~~~~~tiiivtH~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~ 232 (269)
T PRK13648 183 DLVRKVKSEHNITIISITHDLSEAMEADHVIVMNKGTVYKEGTPTEIFDH 232 (269)
T ss_pred HHHHHHHHhcCCEEEEEecCchHHhcCCEEEEEECCEEEEecCHHHHhcC
Confidence 99998753 7899999999999888999999999999999999998764
|
|
| >TIGR03005 ectoine_ehuA ectoine/hydroxyectoine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.3e-31 Score=296.30 Aligned_cols=197 Identities=23% Similarity=0.373 Sum_probs=171.5
Q ss_pred EEEEEEEEEEcCCCCceeeCCCCCCHHHHHHHHhhcccCCCceEEEcCeeCCCCC-------------hHHHhhcCeeec
Q 037346 948 VNIRHLQVRYAPNLPLVLRGRTGSGKSTLIQTLFRIVESTAGHILIDGKDISLIG-------------LHDLRTRLSIIP 1014 (1156)
Q Consensus 948 I~~~~Vsf~Y~~~~~~vL~G~SGsGKSTL~~lL~rl~~p~~G~I~idG~di~~i~-------------~~~LR~~i~~Vp 1014 (1156)
-.++||+|...+++.++|.|+||||||||+++|+|+++|++|+|.+||.++..++ ...+|+.+++|+
T Consensus 14 ~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~v~ 93 (252)
T TIGR03005 14 TVLDGLNFSVAAGEKVALIGPSGSGKSTILRILMTLEPIDEGQIQVEGEQLYHMPGRNGPLVPADEKHLRQMRNKIGMVF 93 (252)
T ss_pred eEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccccccccccccchhHHHHHhhCeEEEe
Confidence 4789999999999999999999999999999999999999999999999997653 246788999999
Q ss_pred ccccccc-ccchhccCCCC----CC----CHHHHHHHHHHcCCChHHHhhcCCcccc-------ccccccCCCEEEEecC
Q 037346 1015 QDPTMFE-GTTRSNLDPLE----EH----ADEQIWEALDKCQLGDEVRKKKGKLDSQ-------GRVLLKKSKVLVLDEA 1078 (1156)
Q Consensus 1015 Qdp~LF~-gTIr~Nl~~~~----~~----~deei~~al~~~~l~~~i~~lp~gl~s~-------ARALLr~~~ILiLDEa 1078 (1156)
|++.+|. .|+++|+.... .. .++++.++++.+++.+.....|..+..+ ||||+++|++||||||
T Consensus 94 q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEP 173 (252)
T TIGR03005 94 QSFNLFPHKTVLDNVTEAPVLVLGMARAEAEKRAMELLDMVGLADKADHMPAQLSGGQQQRVAIARALAMRPKVMLFDEV 173 (252)
T ss_pred cCcccCCCCcHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhHhhcChhhcCHHHHHHHHHHHHHHcCCCEEEEeCC
Confidence 9999885 79999997421 11 2356889999999988888777777655 8999999999999999
Q ss_pred CcCCCHHHHHHHHHHHHHhcC--CceEEEeecCccccc-ccCEEEEEeCcEEeeecChhHHhcCCCChH
Q 037346 1079 TASVDTATDNQIQQTLRQHFS--DCTVVTIAHRITSVL-DSAMVLLLNHGLIKEYDSPTKLLENKSSSF 1144 (1156)
Q Consensus 1079 TS~LD~~te~~I~~~l~~~~~--~~TvI~IaHrl~ti~-~~D~I~Vl~~G~IvE~G~~~eLl~~~~g~f 1144 (1156)
|++||+.+...+.+.|++..+ ++|+|+|||+++.+. -||+|++|++|++++.|+++++.+.....+
T Consensus 174 ~~~LD~~~~~~l~~~l~~~~~~~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~~~~~~ 242 (252)
T TIGR03005 174 TSALDPELVGEVLNVIRRLASEHDLTMLLVTHEMGFAREFADRVCFFDKGRIVEQGKPDEIFRQPKEER 242 (252)
T ss_pred cccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHHHHHHhcCEEEEEECCEEEEeCCHHHHhcCCCcHH
Confidence 999999999999999998753 789999999999985 599999999999999999999986544333
|
Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins. |
| >cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.6e-31 Score=289.70 Aligned_cols=185 Identities=31% Similarity=0.473 Sum_probs=166.3
Q ss_pred eEEEEEEEEEEcCCCCceeeCCCCCCHHHHHHHHhhcccCCCceEEEcCeeCCCCChHHHhhcCeeeccccccccccchh
Q 037346 947 EVNIRHLQVRYAPNLPLVLRGRTGSGKSTLIQTLFRIVESTAGHILIDGKDISLIGLHDLRTRLSIIPQDPTMFEGTTRS 1026 (1156)
Q Consensus 947 ~I~~~~Vsf~Y~~~~~~vL~G~SGsGKSTL~~lL~rl~~p~~G~I~idG~di~~i~~~~LR~~i~~VpQdp~LF~gTIr~ 1026 (1156)
...|+|++|..++++.++|.|+||||||||+++|+|+.+|++|+|.++|.++...+...+|+.++++||++.+|..|+++
T Consensus 17 ~~~l~~i~~~i~~G~~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~tv~e 96 (220)
T cd03245 17 IPALDNVSLTIRAGEKVAIIGRVGSGKSTLLKLLAGLYKPTSGSVLLDGTDIRQLDPADLRRNIGYVPQDVTLFYGTLRD 96 (220)
T ss_pred cccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCeEEECCEEhHHCCHHHHHhhEEEeCCCCccccchHHH
Confidence 35789999999999989999999999999999999999999999999999998888888899999999999999999999
Q ss_pred ccCCCC-CCCHHHHHHHHHHcCCChHHHhhcCCccc-----------c-------ccccccCCCEEEEecCCcCCCHHHH
Q 037346 1027 NLDPLE-EHADEQIWEALDKCQLGDEVRKKKGKLDS-----------Q-------GRVLLKKSKVLVLDEATASVDTATD 1087 (1156)
Q Consensus 1027 Nl~~~~-~~~deei~~al~~~~l~~~i~~lp~gl~s-----------~-------ARALLr~~~ILiLDEaTS~LD~~te 1087 (1156)
|+.+.. ....+++.++++..++.+.+...|.++++ + |||++.+|++|||||||++||+++.
T Consensus 97 ~l~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~LSgG~~qrl~la~al~~~p~llllDEPt~~LD~~~~ 176 (220)
T cd03245 97 NITLGAPLADDERILRAAELAGVTDFVNKHPNGLDLQIGERGRGLSGGQRQAVALARALLNDPPILLLDEPTSAMDMNSE 176 (220)
T ss_pred HhhcCCCCCCHHHHHHHHHHcCcHHHHHhccccccceecCCCccCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHH
Confidence 997643 23456788899999999888887764442 1 8999999999999999999999999
Q ss_pred HHHHHHHHHhcCCceEEEeecCcccccccCEEEEEeCcEEeeec
Q 037346 1088 NQIQQTLRQHFSDCTVVTIAHRITSVLDSAMVLLLNHGLIKEYD 1131 (1156)
Q Consensus 1088 ~~I~~~l~~~~~~~TvI~IaHrl~ti~~~D~I~Vl~~G~IvE~G 1131 (1156)
..+.+.|++..+++|+|++||+++.+..||+|++|++|++++.|
T Consensus 177 ~~l~~~l~~~~~~~tii~~sH~~~~~~~~d~v~~l~~g~i~~~~ 220 (220)
T cd03245 177 ERLKERLRQLLGDKTLIIITHRPSLLDLVDRIIVMDSGRIVADG 220 (220)
T ss_pred HHHHHHHHHhcCCCEEEEEeCCHHHHHhCCEEEEEeCCeEeecC
Confidence 99999999887668999999999988889999999999998865
|
Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane. |
| >PRK13646 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=7.8e-32 Score=302.80 Aligned_cols=192 Identities=23% Similarity=0.364 Sum_probs=167.7
Q ss_pred EEEEEEEEEEcCCCCceeeCCCCCCHHHHHHHHhhcccCCCceEEEcCeeCCCC----ChHHHhhcCeeecccc--cccc
Q 037346 948 VNIRHLQVRYAPNLPLVLRGRTGSGKSTLIQTLFRIVESTAGHILIDGKDISLI----GLHDLRTRLSIIPQDP--TMFE 1021 (1156)
Q Consensus 948 I~~~~Vsf~Y~~~~~~vL~G~SGsGKSTL~~lL~rl~~p~~G~I~idG~di~~i----~~~~LR~~i~~VpQdp--~LF~ 1021 (1156)
..++||+|...+++.++|.|+||||||||+++|+|+++|++|+|.+||+++... +...+|++|+||||+| .+|.
T Consensus 21 ~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~L~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~~~ig~v~q~~~~~l~~ 100 (286)
T PRK13646 21 QAIHDVNTEFEQGKYYAIVGQTGSGKSTLIQNINALLKPTTGTVTVDDITITHKTKDKYIRPVRKRIGMVFQFPESQLFE 100 (286)
T ss_pred CceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEECccccccchHHHHHhheEEEecChHhccch
Confidence 479999999999998999999999999999999999999999999999999764 3467899999999998 5888
Q ss_pred ccchhccCCCC---CCC----HHHHHHHHHHcCCC-hHHHhhcCCcccc-------ccccccCCCEEEEecCCcCCCHHH
Q 037346 1022 GTTRSNLDPLE---EHA----DEQIWEALDKCQLG-DEVRKKKGKLDSQ-------GRVLLKKSKVLVLDEATASVDTAT 1086 (1156)
Q Consensus 1022 gTIr~Nl~~~~---~~~----deei~~al~~~~l~-~~i~~lp~gl~s~-------ARALLr~~~ILiLDEaTS~LD~~t 1086 (1156)
.|+++||.+.. ..+ ++.+.++++.+|+. +.....|..|..+ ||||+.+|+||||||||++||+.+
T Consensus 101 ~tv~e~i~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~LSgGq~qrv~laraL~~~p~illlDEPt~~LD~~~ 180 (286)
T PRK13646 101 DTVEREIIFGPKNFKMNLDEVKNYAHRLLMDLGFSRDVMSQSPFQMSGGQMRKIAIVSILAMNPDIIVLDEPTAGLDPQS 180 (286)
T ss_pred hhHHHHHHhhHHHcCCCHHHHHHHHHHHHHHcCCChhhhhCCcccCCHHHHHHHHHHHHHHhCCCEEEEECCcccCCHHH
Confidence 99999997531 122 34577899999997 5666666666655 899999999999999999999999
Q ss_pred HHHHHHHHHHhc--CCceEEEeecCccccc-ccCEEEEEeCcEEeeecChhHHhcC
Q 037346 1087 DNQIQQTLRQHF--SDCTVVTIAHRITSVL-DSAMVLLLNHGLIKEYDSPTKLLEN 1139 (1156)
Q Consensus 1087 e~~I~~~l~~~~--~~~TvI~IaHrl~ti~-~~D~I~Vl~~G~IvE~G~~~eLl~~ 1139 (1156)
...+.+.|+++. .++|||+|||+++.+. .||+|++|++|+|++.|++++++++
T Consensus 181 ~~~l~~~l~~l~~~~g~tvl~vtH~~~~~~~~~dri~~l~~G~i~~~g~~~~~~~~ 236 (286)
T PRK13646 181 KRQVMRLLKSLQTDENKTIILVSHDMNEVARYADEVIVMKEGSIVSQTSPKELFKD 236 (286)
T ss_pred HHHHHHHHHHHHHhCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEECCHHHHHhC
Confidence 999999999864 4789999999999875 5899999999999999999998864
|
|
| >PRK13643 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=6.9e-32 Score=303.29 Aligned_cols=192 Identities=26% Similarity=0.339 Sum_probs=166.9
Q ss_pred EEEEEEEEEEcCCCCceeeCCCCCCHHHHHHHHhhcccCCCceEEEcCeeCCC----CChHHHhhcCeeecccc--cccc
Q 037346 948 VNIRHLQVRYAPNLPLVLRGRTGSGKSTLIQTLFRIVESTAGHILIDGKDISL----IGLHDLRTRLSIIPQDP--TMFE 1021 (1156)
Q Consensus 948 I~~~~Vsf~Y~~~~~~vL~G~SGsGKSTL~~lL~rl~~p~~G~I~idG~di~~----i~~~~LR~~i~~VpQdp--~LF~ 1021 (1156)
..++||+|...+++.++|.|+||||||||+++|.|+++|++|+|++||.++.. .+...+|++++||+|+| .+|.
T Consensus 20 ~~l~~vsl~i~~Ge~v~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~~~ig~v~q~~~~~l~~ 99 (288)
T PRK13643 20 RALFDIDLEVKKGSYTALIGHTGSGKSTLLQHLNGLLQPTEGKVTVGDIVVSSTSKQKEIKPVRKKVGVVFQFPESQLFE 99 (288)
T ss_pred cceeeeEEEEcCCCEEEEECCCCChHHHHHHHHhcCCCCCCcEEEECCEECccccccccHHHHHhhEEEEecCcchhccc
Confidence 37899999999999999999999999999999999999999999999999863 34567899999999998 7999
Q ss_pred ccchhccCCCCC---CC----HHHHHHHHHHcCCC-hHHHhhcCCcccc-------ccccccCCCEEEEecCCcCCCHHH
Q 037346 1022 GTTRSNLDPLEE---HA----DEQIWEALDKCQLG-DEVRKKKGKLDSQ-------GRVLLKKSKVLVLDEATASVDTAT 1086 (1156)
Q Consensus 1022 gTIr~Nl~~~~~---~~----deei~~al~~~~l~-~~i~~lp~gl~s~-------ARALLr~~~ILiLDEaTS~LD~~t 1086 (1156)
.|+.+|+.++.. .+ ++++.++++.+++. ++....|..|..+ ||||+.+|+||||||||++||+.+
T Consensus 100 ~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~LSgGqkqrvaiA~aL~~~p~illLDEPt~gLD~~~ 179 (288)
T PRK13643 100 ETVLKDVAFGPQNFGIPKEKAEKIAAEKLEMVGLADEFWEKSPFELSGGQMRRVAIAGILAMEPEVLVLDEPTAGLDPKA 179 (288)
T ss_pred chHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCChhhccCCcccCCHHHHHHHHHHHHHHhCCCEEEEECCccCCCHHH
Confidence 999999975321 22 34578889999995 4666666666644 899999999999999999999999
Q ss_pred HHHHHHHHHHhc-CCceEEEeecCccccc-ccCEEEEEeCcEEeeecChhHHhcC
Q 037346 1087 DNQIQQTLRQHF-SDCTVVTIAHRITSVL-DSAMVLLLNHGLIKEYDSPTKLLEN 1139 (1156)
Q Consensus 1087 e~~I~~~l~~~~-~~~TvI~IaHrl~ti~-~~D~I~Vl~~G~IvE~G~~~eLl~~ 1139 (1156)
...+.+.|+++. +++|||+|||+++.+. .||+|++|++|+|++.|+++++..+
T Consensus 180 ~~~l~~~l~~l~~~g~til~vtHd~~~~~~~~dri~~l~~G~i~~~g~~~~~~~~ 234 (288)
T PRK13643 180 RIEMMQLFESIHQSGQTVVLVTHLMDDVADYADYVYLLEKGHIISCGTPSDVFQE 234 (288)
T ss_pred HHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEECCHHHHHcC
Confidence 999999998764 4789999999999875 5999999999999999999998753
|
|
| >PRK10771 thiQ thiamine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.4e-31 Score=292.33 Aligned_cols=186 Identities=19% Similarity=0.329 Sum_probs=164.8
Q ss_pred EEEEEEcCCCCceeeCCCCCCHHHHHHHHhhcccCCCceEEEcCeeCCCCChHHHhhcCeeeccccccccc-cchhccCC
Q 037346 952 HLQVRYAPNLPLVLRGRTGSGKSTLIQTLFRIVESTAGHILIDGKDISLIGLHDLRTRLSIIPQDPTMFEG-TTRSNLDP 1030 (1156)
Q Consensus 952 ~Vsf~Y~~~~~~vL~G~SGsGKSTL~~lL~rl~~p~~G~I~idG~di~~i~~~~LR~~i~~VpQdp~LF~g-TIr~Nl~~ 1030 (1156)
||+|...+++.++|.|+||||||||+++|+|+++|++|+|.+||.++...+. .++.++|+||++.+|.+ |+++|+.+
T Consensus 17 ~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~--~~~~i~~~~q~~~~~~~~tv~e~l~~ 94 (232)
T PRK10771 17 RFDLTVERGERVAILGPSGAGKSTLLNLIAGFLTPASGSLTLNGQDHTTTPP--SRRPVSMLFQENNLFSHLTVAQNIGL 94 (232)
T ss_pred eeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCeecCcCCh--hhccEEEEecccccccCCcHHHHHhc
Confidence 7888888888889999999999999999999999999999999999987654 36789999999999986 99999974
Q ss_pred CC-C------CCHHHHHHHHHHcCCChHHHhhcCCcccc-------ccccccCCCEEEEecCCcCCCHHHHHHHHHHHHH
Q 037346 1031 LE-E------HADEQIWEALDKCQLGDEVRKKKGKLDSQ-------GRVLLKKSKVLVLDEATASVDTATDNQIQQTLRQ 1096 (1156)
Q Consensus 1031 ~~-~------~~deei~~al~~~~l~~~i~~lp~gl~s~-------ARALLr~~~ILiLDEaTS~LD~~te~~I~~~l~~ 1096 (1156)
.. . ..++++.++++.+++.+.+...|..|..+ |||++++|++|||||||++||+++.+.+.+.|++
T Consensus 95 ~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~lllLDEP~~gLD~~~~~~~~~~l~~ 174 (232)
T PRK10771 95 GLNPGLKLNAAQREKLHAIARQMGIEDLLARLPGQLSGGQRQRVALARCLVREQPILLLDEPFSALDPALRQEMLTLVSQ 174 (232)
T ss_pred ccccccCCCHHHHHHHHHHHHHcCcHHHHhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHH
Confidence 21 1 12456899999999998888888877765 8999999999999999999999999999999988
Q ss_pred hcC--CceEEEeecCcccccc-cCEEEEEeCcEEeeecChhHHhcC
Q 037346 1097 HFS--DCTVVTIAHRITSVLD-SAMVLLLNHGLIKEYDSPTKLLEN 1139 (1156)
Q Consensus 1097 ~~~--~~TvI~IaHrl~ti~~-~D~I~Vl~~G~IvE~G~~~eLl~~ 1139 (1156)
..+ ++|+|++||+++.+.. ||+|++|++|++++.|+++++...
T Consensus 175 ~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~g~i~~~g~~~~~~~~ 220 (232)
T PRK10771 175 VCQERQLTLLMVSHSLEDAARIAPRSLVVADGRIAWDGPTDELLSG 220 (232)
T ss_pred HHHhcCCEEEEEECCHHHHHHhCCEEEEEECCEEEEeCCHHHHHhC
Confidence 753 7899999999998765 899999999999999999999864
|
|
| >PRK10575 iron-hydroxamate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=1e-31 Score=298.95 Aligned_cols=192 Identities=22% Similarity=0.316 Sum_probs=169.7
Q ss_pred eEEEEEEEEEEcCCCCceeeCCCCCCHHHHHHHHhhcccCCCceEEEcCeeCCCCChHHHhhcCeeeccccccccc-cch
Q 037346 947 EVNIRHLQVRYAPNLPLVLRGRTGSGKSTLIQTLFRIVESTAGHILIDGKDISLIGLHDLRTRLSIIPQDPTMFEG-TTR 1025 (1156)
Q Consensus 947 ~I~~~~Vsf~Y~~~~~~vL~G~SGsGKSTL~~lL~rl~~p~~G~I~idG~di~~i~~~~LR~~i~~VpQdp~LF~g-TIr 1025 (1156)
...++|++|...+++.++|.|+||||||||+++|+|+++|++|+|.+||.++.+.+...+|+.++++||++.+|.+ |++
T Consensus 24 ~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~ 103 (265)
T PRK10575 24 RTLLHPLSLTFPAGKVTGLIGHNGSGKSTLLKMLGRHQPPSEGEILLDAQPLESWSSKAFARKVAYLPQQLPAAEGMTVR 103 (265)
T ss_pred EEEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCCCEEEECCEehhhCCHHHHhhheEEeccCCCCCCCccHH
Confidence 3568888888888888899999999999999999999999999999999999988888999999999999877665 999
Q ss_pred hccCCCC-----------CCCHHHHHHHHHHcCCChHHHhhcCCcccc-------ccccccCCCEEEEecCCcCCCHHHH
Q 037346 1026 SNLDPLE-----------EHADEQIWEALDKCQLGDEVRKKKGKLDSQ-------GRVLLKKSKVLVLDEATASVDTATD 1087 (1156)
Q Consensus 1026 ~Nl~~~~-----------~~~deei~~al~~~~l~~~i~~lp~gl~s~-------ARALLr~~~ILiLDEaTS~LD~~te 1087 (1156)
+|+.+.. ...++++.++++.+++.+++...|..|..+ ||||+.+|+||||||||++||+.+.
T Consensus 104 e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~laral~~~p~lllLDEPt~~LD~~~~ 183 (265)
T PRK10575 104 ELVAIGRYPWHGALGRFGAADREKVEEAISLVGLKPLAHRLVDSLSGGERQRAWIAMLVAQDSRCLLLDEPTSALDIAHQ 183 (265)
T ss_pred HHHHhCcccccccccCCCHHHHHHHHHHHHHcCCHHHhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHH
Confidence 9996421 012356889999999988887777777655 8999999999999999999999999
Q ss_pred HHHHHHHHHhcC--CceEEEeecCccccc-ccCEEEEEeCcEEeeecChhHHhc
Q 037346 1088 NQIQQTLRQHFS--DCTVVTIAHRITSVL-DSAMVLLLNHGLIKEYDSPTKLLE 1138 (1156)
Q Consensus 1088 ~~I~~~l~~~~~--~~TvI~IaHrl~ti~-~~D~I~Vl~~G~IvE~G~~~eLl~ 1138 (1156)
+.+.+.|+++.+ ++|+|+|||+++.+. .||+|++|++|+|++.|+++++..
T Consensus 184 ~~~~~~l~~l~~~~~~tiii~sH~~~~i~~~~d~i~~l~~G~i~~~~~~~~~~~ 237 (265)
T PRK10575 184 VDVLALVHRLSQERGLTVIAVLHDINMAARYCDYLVALRGGEMIAQGTPAELMR 237 (265)
T ss_pred HHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCeEEEecCHHHhcC
Confidence 999999988742 789999999999885 599999999999999999999874
|
|
| >PRK13409 putative ATPase RIL; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.8e-31 Score=325.38 Aligned_cols=191 Identities=21% Similarity=0.279 Sum_probs=162.1
Q ss_pred ccEEEeeeEEEeCCCCCCCccccceEEeeCCeEEEEEcCCCCChHHHHHHHhCCCCCCCcEEEEcCeEEEEecCCcC-CC
Q 037346 356 TAIEIIDGSFSWDFSSPNPTLRNINLKVFHGMRVAVCGTVGSGKSSCLSCILGGVPKESGIIRLCGTKAYVAQSPWI-QS 434 (1156)
Q Consensus 356 ~~i~~~~~~f~~~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKSTll~~i~g~~~~~~G~i~~~g~~~~v~Q~~~~-~~ 434 (1156)
..++++|+++.|+. ..|+++||+|++||+++|+||||||||||+++|+|+++|++|+|.++-.++|+||++.+ ++
T Consensus 339 ~~l~~~~ls~~~~~----~~l~~~s~~i~~Geiv~l~G~NGsGKSTLlk~L~Gl~~p~~G~I~~~~~i~y~~Q~~~~~~~ 414 (590)
T PRK13409 339 TLVEYPDLTKKLGD----FSLEVEGGEIYEGEVIGIVGPNGIGKTTFAKLLAGVLKPDEGEVDPELKISYKPQYIKPDYD 414 (590)
T ss_pred eEEEEcceEEEECC----EEEEecceEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEEeeeEEEecccccCCCC
Confidence 46999999999952 35999999999999999999999999999999999999999999988789999999865 46
Q ss_pred ccHHHHhhcCCC-CC-HHHHHHHHHHhCCchhhhhCCCCCccccccCCCCCCHHHHHHHHHHHhhccCCCeeeeeCCCCC
Q 037346 435 GKIEENILFGKE-MD-RERYERVLEACSLKKDLEVLPFGDQTIIGERGINLSGGQKQRIQIARPLYQDADIFLLDDPFSP 512 (1156)
Q Consensus 435 ~ti~eni~~~~~-~~-~~~~~~~~~~~~l~~~~~~~~~g~~t~v~~~g~~LSgGqkqRi~lAral~~~~~illlDep~s~ 512 (1156)
.||+||+.++.. .. ....+++++..++.+..+ ....+|||||||||+|||||+.+|++|||||||++
T Consensus 415 ~tv~e~l~~~~~~~~~~~~~~~~L~~l~l~~~~~-----------~~~~~LSGGe~QRvaiAraL~~~p~llLLDEPt~~ 483 (590)
T PRK13409 415 GTVEDLLRSITDDLGSSYYKSEIIKPLQLERLLD-----------KNVKDLSGGELQRVAIAACLSRDADLYLLDEPSAH 483 (590)
T ss_pred CcHHHHHHHHhhhcChHHHHHHHHHHCCCHHHHh-----------CCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCccC
Confidence 799999987532 22 334567778877764333 44578999999999999999999999999999999
Q ss_pred cCHHHHHHHHHHHHh---cCCCEEEEEccCCCccc-cCCEEEEEeCCeEEEccC
Q 037346 513 VDDHTGAHLFKFCWV---SSSKTVIYATHQVEFLP-AADLILVIKDGKITQAGK 562 (1156)
Q Consensus 513 lD~~~~~~i~~~~~~---~~~~tvi~vtH~~~~~~-~~d~i~~l~~G~i~~~g~ 562 (1156)
||+.++..+.+.+.. ..|+|+|+||||++++. .||+|++|++ ++...|+
T Consensus 484 LD~~~~~~l~~~l~~l~~~~g~tviivsHD~~~~~~~aDrvivl~~-~~~~~g~ 536 (590)
T PRK13409 484 LDVEQRLAVAKAIRRIAEEREATALVVDHDIYMIDYISDRLMVFEG-EPGKHGH 536 (590)
T ss_pred CCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEcC-cceeeee
Confidence 999999988876643 24899999999999886 5999999975 7766665
|
|
| >PRK11308 dppF dipeptide transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.1e-31 Score=303.22 Aligned_cols=201 Identities=20% Similarity=0.286 Sum_probs=171.5
Q ss_pred EEEEEEEEEEcCCCCceeeCCCCCCHHHHHHHHhhcccCCCceEEEcCeeCCCCChH---HHhhcCeeeccccc--ccc-
Q 037346 948 VNIRHLQVRYAPNLPLVLRGRTGSGKSTLIQTLFRIVESTAGHILIDGKDISLIGLH---DLRTRLSIIPQDPT--MFE- 1021 (1156)
Q Consensus 948 I~~~~Vsf~Y~~~~~~vL~G~SGsGKSTL~~lL~rl~~p~~G~I~idG~di~~i~~~---~LR~~i~~VpQdp~--LF~- 1021 (1156)
-.++||+|...+++.++|.|+||||||||+++|+|+++|++|+|.+||.|+.+++.. .+|++|++|||+|. |+.
T Consensus 29 ~~l~~vsl~i~~Ge~~~IvG~sGsGKSTLl~~l~gl~~p~~G~i~~~g~~l~~~~~~~~~~~r~~i~~v~Q~~~~~l~p~ 108 (327)
T PRK11308 29 KALDGVSFTLERGKTLAVVGESGCGKSTLARLLTMIETPTGGELYYQGQDLLKADPEAQKLLRQKIQIVFQNPYGSLNPR 108 (327)
T ss_pred eEEeeeEEEECCCCEEEEECCCCCcHHHHHHHHHcCCCCCCcEEEECCEEcCcCCHHHHHHHhCCEEEEEcCchhhcCCc
Confidence 479999999999999999999999999999999999999999999999999988754 56789999999994 554
Q ss_pred ccchhccCC----CCCC----CHHHHHHHHHHcCCCh-HHHhhcCCcccc-------ccccccCCCEEEEecCCcCCCHH
Q 037346 1022 GTTRSNLDP----LEEH----ADEQIWEALDKCQLGD-EVRKKKGKLDSQ-------GRVLLKKSKVLVLDEATASVDTA 1085 (1156)
Q Consensus 1022 gTIr~Nl~~----~~~~----~deei~~al~~~~l~~-~i~~lp~gl~s~-------ARALLr~~~ILiLDEaTS~LD~~ 1085 (1156)
-|+.+|+.. .... ..+++.++++.+++.+ .....|..|..+ ||||+.+|+|||+||||++||..
T Consensus 109 ~~v~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~p~~LSgGq~QRv~iArAL~~~P~lLilDEPts~LD~~ 188 (327)
T PRK11308 109 KKVGQILEEPLLINTSLSAAERREKALAMMAKVGLRPEHYDRYPHMFSGGQRQRIAIARALMLDPDVVVADEPVSALDVS 188 (327)
T ss_pred cCHHHHHHHHHHHccCCCHHHHHHHHHHHHHHCCCChHHhcCCCccCCHHHHHHHHHHHHHHcCCCEEEEECCCccCCHH
Confidence 388888741 1111 1356889999999974 556667666644 89999999999999999999999
Q ss_pred HHHHHHHHHHHhcC--CceEEEeecCcccccc-cCEEEEEeCcEEeeecChhHHhcCCCChHHHHH
Q 037346 1086 TDNQIQQTLRQHFS--DCTVVTIAHRITSVLD-SAMVLLLNHGLIKEYDSPTKLLENKSSSFAQLV 1148 (1156)
Q Consensus 1086 te~~I~~~l~~~~~--~~TvI~IaHrl~ti~~-~D~I~Vl~~G~IvE~G~~~eLl~~~~g~f~~l~ 1148 (1156)
+.+.|.+.|+++.+ +.|+|+|||+++.+.. ||+|+||++|+|+|.|+++++++++...|.+.+
T Consensus 189 ~~~~i~~lL~~l~~~~g~til~iTHdl~~~~~~adrv~vm~~G~ive~g~~~~~~~~p~hpyt~~l 254 (327)
T PRK11308 189 VQAQVLNLMMDLQQELGLSYVFISHDLSVVEHIADEVMVMYLGRCVEKGTKEQIFNNPRHPYTQAL 254 (327)
T ss_pred HHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHHhcCCCCHHHHHH
Confidence 99999999988753 7899999999999975 999999999999999999999987666666543
|
|
| >COG1134 TagH ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.4e-31 Score=275.51 Aligned_cols=185 Identities=21% Similarity=0.303 Sum_probs=160.0
Q ss_pred CCccccceEEeeCCeEEEEEcCCCCChHHHHHHHhCCCCCCCcEEEEcCeEEEEecCCcC--CCccHHHHhhcC------
Q 037346 373 NPTLRNINLKVFHGMRVAVCGTVGSGKSSCLSCILGGVPKESGIIRLCGTKAYVAQSPWI--QSGKIEENILFG------ 444 (1156)
Q Consensus 373 ~~~l~~i~l~i~~g~~~~ivG~~GsGKSTll~~i~g~~~~~~G~i~~~g~~~~v~Q~~~~--~~~ti~eni~~~------ 444 (1156)
..+|+||||++++||.++|+|+||||||||+++|.|.++|++|+|.++|++++.-.-..= ++.|-||||.+-
T Consensus 40 ~~aL~disf~i~~Ge~vGiiG~NGaGKSTLlkliaGi~~Pt~G~v~v~G~v~~li~lg~Gf~pelTGreNi~l~~~~~G~ 119 (249)
T COG1134 40 FWALKDISFEIYKGERVGIIGHNGAGKSTLLKLIAGIYKPTSGKVKVTGKVAPLIELGAGFDPELTGRENIYLRGLILGL 119 (249)
T ss_pred EEEecCceEEEeCCCEEEEECCCCCcHHHHHHHHhCccCCCCceEEEcceEehhhhcccCCCcccchHHHHHHHHHHhCc
Confidence 468999999999999999999999999999999999999999999999999865444332 345999999752
Q ss_pred -CCCCHHHHHHHHHHhCCchhhhhCCCCCccccccCCCCCCHHHHHHHHHHHhhccCCCeeeeeCCCCCcCHHHHHHHHH
Q 037346 445 -KEMDRERYERVLEACSLKKDLEVLPFGDQTIIGERGINLSGGQKQRIQIARPLYQDADIFLLDDPFSPVDDHTGAHLFK 523 (1156)
Q Consensus 445 -~~~~~~~~~~~~~~~~l~~~~~~~~~g~~t~v~~~g~~LSgGqkqRi~lAral~~~~~illlDep~s~lD~~~~~~i~~ 523 (1156)
+...+++++++++.+.|.++++ ....+.|-|++.|+++|-|...+|||||+||.++..|+.-.++-.+
T Consensus 120 ~~~ei~~~~~eIieFaELG~fi~-----------~PvktYSSGM~aRLaFsia~~~~pdILllDEvlavGD~~F~~K~~~ 188 (249)
T COG1134 120 TRKEIDEKVDEIIEFAELGDFID-----------QPVKTYSSGMYARLAFSVATHVEPDILLLDEVLAVGDAAFQEKCLE 188 (249)
T ss_pred cHHHHHHHHHHHHHHHHHHHHhh-----------CchhhccHHHHHHHHHhhhhhcCCCEEEEehhhhcCCHHHHHHHHH
Confidence 2234678889999999987765 3457899999999999999999999999999999999988776655
Q ss_pred HHHh--cCCCEEEEEccCCCcccc-CCEEEEEeCCeEEEccChHHHHh
Q 037346 524 FCWV--SSSKTVIYATHQVEFLPA-ADLILVIKDGKITQAGKYSDILN 568 (1156)
Q Consensus 524 ~~~~--~~~~tvi~vtH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~~ 568 (1156)
.+.. .+++|+|+|||+++.++. ||++++|++|++...|++++..+
T Consensus 189 rl~e~~~~~~tiv~VSHd~~~I~~~Cd~~i~l~~G~i~~~G~~~~vi~ 236 (249)
T COG1134 189 RLNELVEKNKTIVLVSHDLGAIKQYCDRAIWLEHGQIRMEGSPEEVIP 236 (249)
T ss_pred HHHHHHHcCCEEEEEECCHHHHHHhcCeeEEEeCCEEEEcCCHHHHHH
Confidence 5433 567999999999999975 99999999999999999998874
|
|
| >COG4136 ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.8e-31 Score=251.53 Aligned_cols=182 Identities=24% Similarity=0.408 Sum_probs=154.1
Q ss_pred cEEEeeeEEEeCCCCCCCccccceEEeeCCeEEEEEcCCCCChHHHHHHHhCCCCCC---CcEEEEcC-----------e
Q 037346 357 AIEIIDGSFSWDFSSPNPTLRNINLKVFHGMRVAVCGTVGSGKSSCLSCILGGVPKE---SGIIRLCG-----------T 422 (1156)
Q Consensus 357 ~i~~~~~~f~~~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKSTll~~i~g~~~~~---~G~i~~~g-----------~ 422 (1156)
.+.++|++..-+ +...|-++|++|.+||++-+.||||||||||+.-+.|.+.+. +|++.+++ +
T Consensus 2 ~l~l~nvsl~l~---g~cLLa~~n~Tia~GeivtlMGPSGcGKSTLls~~~G~La~~F~~~G~~~l~~~~l~~lPa~qRq 78 (213)
T COG4136 2 MLCLKNVSLRLP---GSCLLANVNFTIAKGEIVTLMGPSGCGKSTLLSWMIGALAGQFSCTGELWLNEQRLDMLPAAQRQ 78 (213)
T ss_pred ceeeeeeeecCC---CceEEEeeeEEecCCcEEEEECCCCccHHHHHHHHHhhcccCcceeeEEEECCeeccccchhhhh
Confidence 467889997775 568999999999999999999999999999999999999875 79999998 3
Q ss_pred EEEEecCCcCCCc-cHHHHhhcCCCCC------HHHHHHHHHHhCCchhhhhCCCCCccccccCCCCCCHHHHHHHHHHH
Q 037346 423 KAYVAQSPWIQSG-KIEENILFGKEMD------RERYERVLEACSLKKDLEVLPFGDQTIIGERGINLSGGQKQRIQIAR 495 (1156)
Q Consensus 423 ~~~v~Q~~~~~~~-ti~eni~~~~~~~------~~~~~~~~~~~~l~~~~~~~~~g~~t~v~~~g~~LSgGqkqRi~lAr 495 (1156)
+|+.+|++|+|+. +|-+|+.|..+.+ +...+.+++..+|+..+.+.| .+||||||.||+|-|
T Consensus 79 ~GiLFQD~lLFphlsVg~Nl~fAlp~~~KG~aRr~~a~aAL~~~gL~g~f~~dP-----------~tlSGGQrARvaL~R 147 (213)
T COG4136 79 IGILFQDALLFPHLSVGQNLLFALPATLKGNARRNAANAALERSGLDGAFHQDP-----------ATLSGGQRARVALLR 147 (213)
T ss_pred eeeeecccccccccccccceEEecCcccccHHHHhhHHHHHHHhccchhhhcCh-----------hhcCcchHHHHHHHH
Confidence 7999999999976 9999999976532 233456788888888877666 589999999999999
Q ss_pred hhccCCCeeeeeCCCCCcCHHHHHHHHHHHHh---cCCCEEEEEccCCCccccCCEEEEE
Q 037346 496 PLYQDADIFLLDDPFSPVDDHTGAHLFKFCWV---SSSKTVIYATHQVEFLPAADLILVI 552 (1156)
Q Consensus 496 al~~~~~illlDep~s~lD~~~~~~i~~~~~~---~~~~tvi~vtH~~~~~~~~d~i~~l 552 (1156)
+|+..|+.++||||+|.||..-+.+..+..+. ..|-.+|+||||.+.++...+|+.|
T Consensus 148 ~Lla~Pk~lLLDEPFS~LD~ALR~qfR~wVFs~~r~agiPtv~VTHD~~DvpagsrVie~ 207 (213)
T COG4136 148 ALLAQPKALLLDEPFSRLDVALRDQFRQWVFSEVRAAGIPTVQVTHDLQDVPAGSRVIEM 207 (213)
T ss_pred HHHhCcceeeeCCchhHHHHHHHHHHHHHHHHHHHhcCCCeEEEecccccCCCCCeeeee
Confidence 99999999999999999999877665555443 4578899999999988865566554
|
|
| >PRK13640 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.3e-31 Score=300.25 Aligned_cols=192 Identities=22% Similarity=0.343 Sum_probs=171.4
Q ss_pred EEEEEEEEEEcCCCCceeeCCCCCCHHHHHHHHhhcccCCC---ceEEEcCeeCCCCChHHHhhcCeeecccc--ccccc
Q 037346 948 VNIRHLQVRYAPNLPLVLRGRTGSGKSTLIQTLFRIVESTA---GHILIDGKDISLIGLHDLRTRLSIIPQDP--TMFEG 1022 (1156)
Q Consensus 948 I~~~~Vsf~Y~~~~~~vL~G~SGsGKSTL~~lL~rl~~p~~---G~I~idG~di~~i~~~~LR~~i~~VpQdp--~LF~g 1022 (1156)
..++||+|..++++.++|.|+||||||||+++|+|+++|++ |+|.+||.++...+...+|++++||||+| .+++.
T Consensus 21 ~~l~~v~l~i~~Ge~~~I~G~nGaGKSTLl~~l~G~~~p~~g~~G~i~i~g~~~~~~~~~~~~~~ig~v~q~~~~~~~~~ 100 (282)
T PRK13640 21 PALNDISFSIPRGSWTALIGHNGSGKSTISKLINGLLLPDDNPNSKITVDGITLTAKTVWDIREKVGIVFQNPDNQFVGA 100 (282)
T ss_pred cceeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcccCCCCCCCcEEEECCEECCcCCHHHHHhheEEEEECHHHhhccC
Confidence 36899999999998889999999999999999999999998 89999999999888888899999999998 46788
Q ss_pred cchhccCCCC---CCCH----HHHHHHHHHcCCChHHHhhcCCcccc-------ccccccCCCEEEEecCCcCCCHHHHH
Q 037346 1023 TTRSNLDPLE---EHAD----EQIWEALDKCQLGDEVRKKKGKLDSQ-------GRVLLKKSKVLVLDEATASVDTATDN 1088 (1156)
Q Consensus 1023 TIr~Nl~~~~---~~~d----eei~~al~~~~l~~~i~~lp~gl~s~-------ARALLr~~~ILiLDEaTS~LD~~te~ 1088 (1156)
|+++||.+.. ..+. +++.++++.+++.++....|..|..+ ||||+.+|++|||||||++||+.+..
T Consensus 101 tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LS~G~~qrv~laral~~~P~llllDEPt~gLD~~~~~ 180 (282)
T PRK13640 101 TVGDDVAFGLENRAVPRPEMIKIVRDVLADVGMLDYIDSEPANLSGGQKQRVAIAGILAVEPKIIILDESTSMLDPAGKE 180 (282)
T ss_pred CHHHHHHhhHHhCCCCHHHHHHHHHHHHHHCCChhHhcCCcccCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHH
Confidence 9999997531 1222 45788999999999888888777755 89999999999999999999999999
Q ss_pred HHHHHHHHhcC--CceEEEeecCcccccccCEEEEEeCcEEeeecChhHHhcC
Q 037346 1089 QIQQTLRQHFS--DCTVVTIAHRITSVLDSAMVLLLNHGLIKEYDSPTKLLEN 1139 (1156)
Q Consensus 1089 ~I~~~l~~~~~--~~TvI~IaHrl~ti~~~D~I~Vl~~G~IvE~G~~~eLl~~ 1139 (1156)
.+.+.|+++.+ ++|||++||+++.+..||+|++|++|++++.|++++++..
T Consensus 181 ~l~~~l~~l~~~~g~tvli~tH~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~ 233 (282)
T PRK13640 181 QILKLIRKLKKKNNLTVISITHDIDEANMADQVLVLDDGKLLAQGSPVEIFSK 233 (282)
T ss_pred HHHHHHHHHHHhcCCEEEEEecCHHHHHhCCEEEEEECCEEEEeCCHHHHhcC
Confidence 99999988753 7899999999999989999999999999999999998753
|
|
| >PRK10744 pstB phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.1e-31 Score=295.76 Aligned_cols=194 Identities=25% Similarity=0.385 Sum_probs=164.5
Q ss_pred EEEEEEEEEEcCCCCceeeCCCCCCHHHHHHHHhhccc-----CCCceEEEcCeeCCC--CChHHHhhcCeeeccccccc
Q 037346 948 VNIRHLQVRYAPNLPLVLRGRTGSGKSTLIQTLFRIVE-----STAGHILIDGKDISL--IGLHDLRTRLSIIPQDPTMF 1020 (1156)
Q Consensus 948 I~~~~Vsf~Y~~~~~~vL~G~SGsGKSTL~~lL~rl~~-----p~~G~I~idG~di~~--i~~~~LR~~i~~VpQdp~LF 1020 (1156)
..++|++|...+++.++|.|+||||||||+++|+|+++ |++|+|.+||.++.. .+...+|++++|+||++.+|
T Consensus 27 ~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~p~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~ 106 (260)
T PRK10744 27 HALKNINLDIAKNQVTAFIGPSGCGKSTLLRTFNRMYELYPEQRAEGEILLDGENILTPKQDIALLRAKVGMVFQKPTPF 106 (260)
T ss_pred EEeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCcceEEEECCEEccccccchHHHhcceEEEecCCccC
Confidence 35777777777888888999999999999999999986 589999999999863 45678899999999999999
Q ss_pred cccchhccCCCC----CCC----HHHHHHHHHHcCCChH----HHhhcCCcccc-------ccccccCCCEEEEecCCcC
Q 037346 1021 EGTTRSNLDPLE----EHA----DEQIWEALDKCQLGDE----VRKKKGKLDSQ-------GRVLLKKSKVLVLDEATAS 1081 (1156)
Q Consensus 1021 ~gTIr~Nl~~~~----~~~----deei~~al~~~~l~~~----i~~lp~gl~s~-------ARALLr~~~ILiLDEaTS~ 1081 (1156)
..|+++|+.+.. ..+ +++++++++.+++.+. ....+..|..+ ||||+++|+||||||||++
T Consensus 107 ~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~qrv~laral~~~p~lllLDEPt~~ 186 (260)
T PRK10744 107 PMSIYDNIAFGVRLFEKLSRAEMDERVEWALTKAALWNEVKDKLHQSGYSLSGGQQQRLCIARGIAIRPEVLLLDEPCSA 186 (260)
T ss_pred cCcHHHHHhhhHhhcCCCCHHHHHHHHHHHHHHcCCChhhHHHHhcCCCCCCHHHHHHHHHHHHHHCCCCEEEEcCCCcc
Confidence 999999997531 122 3568899999998543 33444445444 8999999999999999999
Q ss_pred CCHHHHHHHHHHHHHhcCCceEEEeecCccccc-ccCEEEEEeCcEEeeecChhHHhcCCC
Q 037346 1082 VDTATDNQIQQTLRQHFSDCTVVTIAHRITSVL-DSAMVLLLNHGLIKEYDSPTKLLENKS 1141 (1156)
Q Consensus 1082 LD~~te~~I~~~l~~~~~~~TvI~IaHrl~ti~-~~D~I~Vl~~G~IvE~G~~~eLl~~~~ 1141 (1156)
||+++.+.+.+.|++..++.|+|+|||+++.+. -||+|++|++|++++.|+++++...+.
T Consensus 187 LD~~~~~~l~~~L~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~~~ 247 (260)
T PRK10744 187 LDPISTGRIEELITELKQDYTVVIVTHNMQQAARCSDYTAFMYLGELIEFGNTDTIFTKPA 247 (260)
T ss_pred CCHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHHhCCC
Confidence 999999999999998877789999999999885 599999999999999999999986543
|
|
| >PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.4e-31 Score=324.68 Aligned_cols=191 Identities=27% Similarity=0.400 Sum_probs=156.3
Q ss_pred ccEEEeeeEEEeCCCCCCCccccceEEeeCCeEEEEEcCCCCChHHHHHHHhCCCCC-CCcEEEEcCe------------
Q 037346 356 TAIEIIDGSFSWDFSSPNPTLRNINLKVFHGMRVAVCGTVGSGKSSCLSCILGGVPK-ESGIIRLCGT------------ 422 (1156)
Q Consensus 356 ~~i~~~~~~f~~~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKSTll~~i~g~~~~-~~G~i~~~g~------------ 422 (1156)
..++++|+++.|+ ++.+|+|+||++++||+++|+||||||||||+++|+|+.++ ++|+|.++|+
T Consensus 259 ~~l~~~~l~~~~~---~~~il~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~G~~~~~~~G~i~~~g~~~~~~~~~~~~~ 335 (490)
T PRK10938 259 PRIVLNNGVVSYN---DRPILHNLSWQVNPGEHWQIVGPNGAGKSTLLSLITGDHPQGYSNDLTLFGRRRGSGETIWDIK 335 (490)
T ss_pred ceEEEeceEEEEC---CeeEEeeceEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCcccCCeEEEecccCCCCCCHHHHH
Confidence 4699999999996 34699999999999999999999999999999999998876 6999999762
Q ss_pred --EEEEecCCcCC---CccHHHHhhcCC--------CCC---HHHHHHHHHHhCCch-hhhhCCCCCccccccCCCCCCH
Q 037346 423 --KAYVAQSPWIQ---SGKIEENILFGK--------EMD---RERYERVLEACSLKK-DLEVLPFGDQTIIGERGINLSG 485 (1156)
Q Consensus 423 --~~~v~Q~~~~~---~~ti~eni~~~~--------~~~---~~~~~~~~~~~~l~~-~~~~~~~g~~t~v~~~g~~LSg 485 (1156)
++|++|++.++ ..++++++.++. ... +++.+++++.+++.+ .. .....+|||
T Consensus 336 ~~i~~v~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-----------~~~~~~LSg 404 (490)
T PRK10938 336 KHIGYVSSSLHLDYRVSTSVRNVILSGFFDSIGIYQAVSDRQQKLAQQWLDILGIDKRTA-----------DAPFHSLSW 404 (490)
T ss_pred hhceEECHHHHhhcccCCcHHHHHHhccccccccccCCCHHHHHHHHHHHHHcCCchhhc-----------cCchhhCCH
Confidence 68999998653 246777765431 011 234566777777754 22 234568999
Q ss_pred HHHHHHHHHHhhccCCCeeeeeCCCCCcCHHHHHHHHHHHHh--cCC-CEEEEEccCCCcccc--CCEEEEEeCCeEEEc
Q 037346 486 GQKQRIQIARPLYQDADIFLLDDPFSPVDDHTGAHLFKFCWV--SSS-KTVIYATHQVEFLPA--ADLILVIKDGKITQA 560 (1156)
Q Consensus 486 GqkqRi~lAral~~~~~illlDep~s~lD~~~~~~i~~~~~~--~~~-~tvi~vtH~~~~~~~--~d~i~~l~~G~i~~~ 560 (1156)
|||||++||||++.+|++|||||||++||+.+.+.+.+.+.. .++ .|+|++||+++.+.. ||++++|++|++++.
T Consensus 405 Gq~qrv~la~al~~~p~lllLDEPt~gLD~~~~~~l~~~L~~l~~~~~~tviivsHd~~~~~~~~~d~v~~l~~G~i~~~ 484 (490)
T PRK10938 405 GQQRLALIVRALVKHPTLLILDEPLQGLDPLNRQLVRRFVDVLISEGETQLLFVSHHAEDAPACITHRLEFVPDGDIYRY 484 (490)
T ss_pred HHHHHHHHHHHHhcCCCEEEEcCccccCCHHHHHHHHHHHHHHHhcCCcEEEEEecchhhhhhhhheeEEEecCCceEEe
Confidence 999999999999999999999999999999999999876644 344 479999999999863 899999999998754
|
|
| >TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein | Back alignment and domain information |
|---|
Probab=99.97 E-value=5.6e-32 Score=292.34 Aligned_cols=180 Identities=24% Similarity=0.354 Sum_probs=158.8
Q ss_pred EEEEEEEEEEcCCCCceeeCCCCCCHHHHHHHHhhcccCCCceEEEcCeeCCCCChH---HHhhcCeeecccccccc-cc
Q 037346 948 VNIRHLQVRYAPNLPLVLRGRTGSGKSTLIQTLFRIVESTAGHILIDGKDISLIGLH---DLRTRLSIIPQDPTMFE-GT 1023 (1156)
Q Consensus 948 I~~~~Vsf~Y~~~~~~vL~G~SGsGKSTL~~lL~rl~~p~~G~I~idG~di~~i~~~---~LR~~i~~VpQdp~LF~-gT 1023 (1156)
..++|++|...+++.++|.|+||||||||+++|+|+++|++|+|.+||.++.+.+.. .+|++++|+||+|.+|. .|
T Consensus 17 ~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~t 96 (216)
T TIGR00960 17 PALDNLNFHITKGEMVFLVGHSGAGKSTFLKLILGIEKPTRGKIRFNGQDLTRLRGREIPFLRRHIGMVFQDHRLLSDRT 96 (216)
T ss_pred eEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEehhhcChhHHHHHHHhceEEecCcccccccc
Confidence 478999999999999999999999999999999999999999999999999876643 47889999999999886 59
Q ss_pred chhccCCC----CC---CCHHHHHHHHHHcCCChHHHhhcCCcccc-------ccccccCCCEEEEecCCcCCCHHHHHH
Q 037346 1024 TRSNLDPL----EE---HADEQIWEALDKCQLGDEVRKKKGKLDSQ-------GRVLLKKSKVLVLDEATASVDTATDNQ 1089 (1156)
Q Consensus 1024 Ir~Nl~~~----~~---~~deei~~al~~~~l~~~i~~lp~gl~s~-------ARALLr~~~ILiLDEaTS~LD~~te~~ 1089 (1156)
+++|+.+. .. ..++++.++++.+++.+.....|..|..+ ||||+++|+||||||||++||+++.+.
T Consensus 97 v~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~laral~~~p~llllDEPt~~LD~~~~~~ 176 (216)
T TIGR00960 97 VYDNVAFPLRIIGVPPRDANERVSAALEKVGLEGKAHALPMQLSGGEQQRVAIARAIVHKPPLLLADEPTGNLDPELSRD 176 (216)
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCcCCHHHHHH
Confidence 99999642 11 12457899999999998888888777655 899999999999999999999999999
Q ss_pred HHHHHHHhc-CCceEEEeecCcccccc-cCEEEEEeCcEE
Q 037346 1090 IQQTLRQHF-SDCTVVTIAHRITSVLD-SAMVLLLNHGLI 1127 (1156)
Q Consensus 1090 I~~~l~~~~-~~~TvI~IaHrl~ti~~-~D~I~Vl~~G~I 1127 (1156)
+.+.|++.. +++|+|+|||+++.+.. ||+|++|++|+|
T Consensus 177 l~~~l~~~~~~~~tii~vsH~~~~~~~~~d~i~~l~~G~i 216 (216)
T TIGR00960 177 IMRLFEEFNRRGTTVLVATHDINLVETYRHRTLTLSRGRL 216 (216)
T ss_pred HHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEeCCcC
Confidence 999998864 47899999999998875 899999999985
|
|
| >PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.3e-31 Score=292.77 Aligned_cols=186 Identities=20% Similarity=0.296 Sum_probs=163.4
Q ss_pred eEEEEEEEEEEcCCCCceeeCCCCCCHHHHHHHHhhcccCCCceEEEcCeeCCCCChHH---Hh-hcCeeeccccccccc
Q 037346 947 EVNIRHLQVRYAPNLPLVLRGRTGSGKSTLIQTLFRIVESTAGHILIDGKDISLIGLHD---LR-TRLSIIPQDPTMFEG 1022 (1156)
Q Consensus 947 ~I~~~~Vsf~Y~~~~~~vL~G~SGsGKSTL~~lL~rl~~p~~G~I~idG~di~~i~~~~---LR-~~i~~VpQdp~LF~g 1022 (1156)
...++|++|+.++++.++|.|+||||||||+++|+|+++|++|+|.+||.++..++... +| +.++|+||++.+|.+
T Consensus 22 ~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~i~~~~~~~~~~~~~~~i~~v~q~~~~~~~ 101 (233)
T PRK11629 22 TDVLHNVSFSIGEGEMMAIVGSSGSGKSTLLHLLGGLDTPTSGDVIFNGQPMSKLSSAAKAELRNQKLGFIYQFHHLLPD 101 (233)
T ss_pred eeeEEeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcCcCCHHHHHHHHhccEEEEecCcccCCC
Confidence 35799999999999988999999999999999999999999999999999999887654 33 679999999999875
Q ss_pred -cchhccCCC---CCC----CHHHHHHHHHHcCCChHHHhhcCCcccc-------ccccccCCCEEEEecCCcCCCHHHH
Q 037346 1023 -TTRSNLDPL---EEH----ADEQIWEALDKCQLGDEVRKKKGKLDSQ-------GRVLLKKSKVLVLDEATASVDTATD 1087 (1156)
Q Consensus 1023 -TIr~Nl~~~---~~~----~deei~~al~~~~l~~~i~~lp~gl~s~-------ARALLr~~~ILiLDEaTS~LD~~te 1087 (1156)
|+++|+.+. ... .++++.++++..++.+.....|..|..+ |||++.+|+||||||||++||+++.
T Consensus 102 ~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgG~~qrl~la~al~~~p~lllLDEPt~~LD~~~~ 181 (233)
T PRK11629 102 FTALENVAMPLLIGKKKPAEINSRALEMLAAVGLEHRANHRPSELSGGERQRVAIARALVNNPRLVLADEPTGNLDARNA 181 (233)
T ss_pred CCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHH
Confidence 999998641 111 1346889999999988877777666654 8999999999999999999999999
Q ss_pred HHHHHHHHHhc--CCceEEEeecCcccccccCEEEEEeCcEEeeecC
Q 037346 1088 NQIQQTLRQHF--SDCTVVTIAHRITSVLDSAMVLLLNHGLIKEYDS 1132 (1156)
Q Consensus 1088 ~~I~~~l~~~~--~~~TvI~IaHrl~ti~~~D~I~Vl~~G~IvE~G~ 1132 (1156)
..+.+.|++.. +++|||+|||+++.+..+|++++|++|+|++.|+
T Consensus 182 ~~l~~~l~~~~~~~g~tvii~sH~~~~~~~~~~~~~l~~G~i~~~~~ 228 (233)
T PRK11629 182 DSIFQLLGELNRLQGTAFLVVTHDLQLAKRMSRQLEMRDGRLTAELS 228 (233)
T ss_pred HHHHHHHHHHHHhCCCEEEEEeCCHHHHHhhCEEEEEECCEEEEEec
Confidence 99999999864 4789999999999999999999999999998876
|
|
| >PRK11831 putative ABC transporter ATP-binding protein YrbF; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.9e-31 Score=297.34 Aligned_cols=203 Identities=18% Similarity=0.283 Sum_probs=172.7
Q ss_pred eEEEEEEEEEEcCCCCceeeCCCCCCHHHHHHHHhhcccCCCceEEEcCeeCCCCChH---HHhhcCeeeccccccccc-
Q 037346 947 EVNIRHLQVRYAPNLPLVLRGRTGSGKSTLIQTLFRIVESTAGHILIDGKDISLIGLH---DLRTRLSIIPQDPTMFEG- 1022 (1156)
Q Consensus 947 ~I~~~~Vsf~Y~~~~~~vL~G~SGsGKSTL~~lL~rl~~p~~G~I~idG~di~~i~~~---~LR~~i~~VpQdp~LF~g- 1022 (1156)
...++||+|..++++.++|.|+||||||||+++|+|+++|++|+|.+||.++..++.. .+|++++|+||++.+|.+
T Consensus 20 ~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~~i~~v~q~~~~~~~~ 99 (269)
T PRK11831 20 RCIFDNISLTVPRGKITAIMGPSGIGKTTLLRLIGGQIAPDHGEILFDGENIPAMSRSRLYTVRKRMSMLFQSGALFTDM 99 (269)
T ss_pred EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEccccChhhHHHHhhcEEEEecccccCCCC
Confidence 3478999999999998999999999999999999999999999999999999877643 457889999999999986
Q ss_pred cchhccCCC----CCCC----HHHHHHHHHHcCCChHHHhhcCCcccc-------ccccccCCCEEEEecCCcCCCHHHH
Q 037346 1023 TTRSNLDPL----EEHA----DEQIWEALDKCQLGDEVRKKKGKLDSQ-------GRVLLKKSKVLVLDEATASVDTATD 1087 (1156)
Q Consensus 1023 TIr~Nl~~~----~~~~----deei~~al~~~~l~~~i~~lp~gl~s~-------ARALLr~~~ILiLDEaTS~LD~~te 1087 (1156)
|+++|+.+. .... ++.+.++++.+++.+.....|..|..+ ||||+++|++|||||||++||+++.
T Consensus 100 tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGq~qrv~laral~~~p~lllLDEPt~~LD~~~~ 179 (269)
T PRK11831 100 NVFDNVAYPLREHTQLPAPLLHSTVMMKLEAVGLRGAAKLMPSELSGGMARRAALARAIALEPDLIMFDEPFVGQDPITM 179 (269)
T ss_pred CHHHHHHHHHHHccCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHH
Confidence 999999631 1122 235778899999988777766666654 8999999999999999999999999
Q ss_pred HHHHHHHHHhcC--CceEEEeecCcccccc-cCEEEEEeCcEEeeecChhHHhcCCCChHHHHHH
Q 037346 1088 NQIQQTLRQHFS--DCTVVTIAHRITSVLD-SAMVLLLNHGLIKEYDSPTKLLENKSSSFAQLVA 1149 (1156)
Q Consensus 1088 ~~I~~~l~~~~~--~~TvI~IaHrl~ti~~-~D~I~Vl~~G~IvE~G~~~eLl~~~~g~f~~l~~ 1149 (1156)
+.+.+.|++..+ ++|||+|||+++.+.. ||+|++|++|++++.|++++++++....+..++.
T Consensus 180 ~~l~~~l~~~~~~~g~tiiivsH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~~~~~~~~~~~ 244 (269)
T PRK11831 180 GVLVKLISELNSALGVTCVVVSHDVPEVLSIADHAYIVADKKIVAHGSAQALQANPDPRVRQFLD 244 (269)
T ss_pred HHHHHHHHHHHHhcCcEEEEEecCHHHHHHhhCEEEEEECCEEEEeCCHHHHhcCCcHHHHHHHH
Confidence 999999998743 7899999999998865 9999999999999999999998754444555554
|
|
| >cd03300 ABC_PotA_N PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D | Back alignment and domain information |
|---|
Probab=99.97 E-value=9.7e-32 Score=293.43 Aligned_cols=192 Identities=27% Similarity=0.380 Sum_probs=170.5
Q ss_pred eEEEEEEEEEEcCCCCceeeCCCCCCHHHHHHHHhhcccCCCceEEEcCeeCCCCChHHHhhcCeeeccccccccc-cch
Q 037346 947 EVNIRHLQVRYAPNLPLVLRGRTGSGKSTLIQTLFRIVESTAGHILIDGKDISLIGLHDLRTRLSIIPQDPTMFEG-TTR 1025 (1156)
Q Consensus 947 ~I~~~~Vsf~Y~~~~~~vL~G~SGsGKSTL~~lL~rl~~p~~G~I~idG~di~~i~~~~LR~~i~~VpQdp~LF~g-TIr 1025 (1156)
...|+|++|+..+++.++|.|+||||||||+++|+|+++|++|+|.+||.++.+.+. .|+.++++||++.+|.+ |++
T Consensus 13 ~~il~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~--~~~~i~~~~q~~~~~~~~t~~ 90 (232)
T cd03300 13 FVALDGVSLDIKEGEFFTLLGPSGCGKTTLLRLIAGFETPTSGEILLDGKDITNLPP--HKRPVNTVFQNYALFPHLTVF 90 (232)
T ss_pred eeeeccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcCcCCh--hhcceEEEecccccCCCCcHH
Confidence 358999999999999999999999999999999999999999999999999987664 36789999999999976 999
Q ss_pred hccCCCC-------CCCHHHHHHHHHHcCCChHHHhhcCCcccc-------ccccccCCCEEEEecCCcCCCHHHHHHHH
Q 037346 1026 SNLDPLE-------EHADEQIWEALDKCQLGDEVRKKKGKLDSQ-------GRVLLKKSKVLVLDEATASVDTATDNQIQ 1091 (1156)
Q Consensus 1026 ~Nl~~~~-------~~~deei~~al~~~~l~~~i~~lp~gl~s~-------ARALLr~~~ILiLDEaTS~LD~~te~~I~ 1091 (1156)
+|+.+.. ...++++.++++..++.++....|..+..+ |||++++|++|||||||++||+.+.+.+.
T Consensus 91 ~nl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~lS~G~~qrl~laral~~~p~llllDEP~~gLD~~~~~~l~ 170 (232)
T cd03300 91 ENIAFGLRLKKLPKAEIKERVAEALDLVQLEGYANRKPSQLSGGQQQRVAIARALVNEPKVLLLDEPLGALDLKLRKDMQ 170 (232)
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHH
Confidence 9986321 112457889999999999988888777765 89999999999999999999999999999
Q ss_pred HHHHHhcC--CceEEEeecCcccccc-cCEEEEEeCcEEeeecChhHHhcCC
Q 037346 1092 QTLRQHFS--DCTVVTIAHRITSVLD-SAMVLLLNHGLIKEYDSPTKLLENK 1140 (1156)
Q Consensus 1092 ~~l~~~~~--~~TvI~IaHrl~ti~~-~D~I~Vl~~G~IvE~G~~~eLl~~~ 1140 (1156)
+.|++..+ ++|+|+++|+++.+.. ||+|++|++|++++.|+++++.+..
T Consensus 171 ~~l~~~~~~~~~tiii~sh~~~~~~~~~d~i~~l~~G~~~~~~~~~~~~~~~ 222 (232)
T cd03300 171 LELKRLQKELGITFVFVTHDQEEALTMSDRIAVMNKGKIQQIGTPEEIYEEP 222 (232)
T ss_pred HHHHHHHHHcCCEEEEEeCCHHHHHHhcCEEEEEECCEEEecCCHHHHHhCC
Confidence 99988753 7899999999998765 8999999999999999999998653
|
PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK10619 histidine/lysine/arginine/ornithine transporter subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.3e-31 Score=295.12 Aligned_cols=195 Identities=25% Similarity=0.375 Sum_probs=167.1
Q ss_pred eEEEEEEEEEEcCCCCceeeCCCCCCHHHHHHHHhhcccCCCceEEEcCeeCCCCC-------------hHHHhhcCeee
Q 037346 947 EVNIRHLQVRYAPNLPLVLRGRTGSGKSTLIQTLFRIVESTAGHILIDGKDISLIG-------------LHDLRTRLSII 1013 (1156)
Q Consensus 947 ~I~~~~Vsf~Y~~~~~~vL~G~SGsGKSTL~~lL~rl~~p~~G~I~idG~di~~i~-------------~~~LR~~i~~V 1013 (1156)
...++|++|...+++.++|.|+||||||||+++|+|+++|++|+|.+||.++..+. ...+|++++||
T Consensus 18 ~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v 97 (257)
T PRK10619 18 HEVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSEGSIVVNGQTINLVRDKDGQLKVADKNQLRLLRTRLTMV 97 (257)
T ss_pred EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEcccccccccccccccchHHHHHhhceEEE
Confidence 34688888888888888999999999999999999999999999999999986531 35678899999
Q ss_pred ccccccccc-cchhccCCCC----CC----CHHHHHHHHHHcCCChHH-HhhcCCcccc-------ccccccCCCEEEEe
Q 037346 1014 PQDPTMFEG-TTRSNLDPLE----EH----ADEQIWEALDKCQLGDEV-RKKKGKLDSQ-------GRVLLKKSKVLVLD 1076 (1156)
Q Consensus 1014 pQdp~LF~g-TIr~Nl~~~~----~~----~deei~~al~~~~l~~~i-~~lp~gl~s~-------ARALLr~~~ILiLD 1076 (1156)
||++.+|.+ |+++|+.++. .. .++++.++++..++.+.. ...+..+..+ ||||+++|++||||
T Consensus 98 ~q~~~l~~~~sv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LS~G~~qrv~laral~~~p~llllD 177 (257)
T PRK10619 98 FQHFNLWSHMTVLENVMEAPIQVLGLSKQEARERAVKYLAKVGIDERAQGKYPVHLSGGQQQRVSIARALAMEPEVLLFD 177 (257)
T ss_pred ecCcccCCCCcHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCChhhhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEe
Confidence 999999975 9999996421 11 135688999999998875 5555555544 89999999999999
Q ss_pred cCCcCCCHHHHHHHHHHHHHhc-CCceEEEeecCcccccc-cCEEEEEeCcEEeeecChhHHhcCCC
Q 037346 1077 EATASVDTATDNQIQQTLRQHF-SDCTVVTIAHRITSVLD-SAMVLLLNHGLIKEYDSPTKLLENKS 1141 (1156)
Q Consensus 1077 EaTS~LD~~te~~I~~~l~~~~-~~~TvI~IaHrl~ti~~-~D~I~Vl~~G~IvE~G~~~eLl~~~~ 1141 (1156)
|||++||+.+.+.+.+.|+++. +++|+|+|||+++.+.. ||||++|++|++++.|+++++++.+.
T Consensus 178 EPt~~LD~~~~~~l~~~l~~l~~~g~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~~~ 244 (257)
T PRK10619 178 EPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHEMGFARHVSSHVIFLHQGKIEEEGAPEQLFGNPQ 244 (257)
T ss_pred CCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEECCEEEEeCCHHHhhhCcc
Confidence 9999999999999999998875 47999999999999886 89999999999999999999986543
|
|
| >cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup | Back alignment and domain information |
|---|
Probab=99.97 E-value=1e-31 Score=289.61 Aligned_cols=182 Identities=23% Similarity=0.359 Sum_probs=159.6
Q ss_pred EEEEEEEEEEcCCCCceeeCCCCCCHHHHHHHHhhcccCCCceEEEcCeeCCCCChHHHhhcCeeecccccccc-ccchh
Q 037346 948 VNIRHLQVRYAPNLPLVLRGRTGSGKSTLIQTLFRIVESTAGHILIDGKDISLIGLHDLRTRLSIIPQDPTMFE-GTTRS 1026 (1156)
Q Consensus 948 I~~~~Vsf~Y~~~~~~vL~G~SGsGKSTL~~lL~rl~~p~~G~I~idG~di~~i~~~~LR~~i~~VpQdp~LF~-gTIr~ 1026 (1156)
..++|++|...+++.++|.|+||||||||+++|+|+++|++|+|.+||.++.+.+ ..+++++||||+|.+|. .|+++
T Consensus 14 ~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~--~~~~~i~~v~q~~~~~~~~tv~~ 91 (213)
T cd03259 14 RALDDLSLTVEPGEFLALLGPSGCGKTTLLRLIAGLERPDSGEILIDGRDVTGVP--PERRNIGMVFQDYALFPHLTVAE 91 (213)
T ss_pred eeecceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEcCcCc--hhhccEEEEcCchhhccCCcHHH
Confidence 4799999999999999999999999999999999999999999999999998754 35778999999999886 59999
Q ss_pred ccCCCC---CCC----HHHHHHHHHHcCCChHHHhhcCCcccc-------ccccccCCCEEEEecCCcCCCHHHHHHHHH
Q 037346 1027 NLDPLE---EHA----DEQIWEALDKCQLGDEVRKKKGKLDSQ-------GRVLLKKSKVLVLDEATASVDTATDNQIQQ 1092 (1156)
Q Consensus 1027 Nl~~~~---~~~----deei~~al~~~~l~~~i~~lp~gl~s~-------ARALLr~~~ILiLDEaTS~LD~~te~~I~~ 1092 (1156)
|+.... ... ++++.++++..++.++....|..|..+ ||||+++|++|||||||++||+++...+.+
T Consensus 92 ~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrl~la~al~~~p~~lllDEPt~~LD~~~~~~l~~ 171 (213)
T cd03259 92 NIAFGLKLRGVPKAEIRARVRELLELVGLEGLLNRYPHELSGGQQQRVALARALAREPSLLLLDEPLSALDAKLREELRE 171 (213)
T ss_pred HHHhHHHHcCCCHHHHHHHHHHHHHHcCChhhhhcChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHH
Confidence 996431 111 346889999999998887777777655 899999999999999999999999999999
Q ss_pred HHHHhc--CCceEEEeecCcccccc-cCEEEEEeCcEEeeec
Q 037346 1093 TLRQHF--SDCTVVTIAHRITSVLD-SAMVLLLNHGLIKEYD 1131 (1156)
Q Consensus 1093 ~l~~~~--~~~TvI~IaHrl~ti~~-~D~I~Vl~~G~IvE~G 1131 (1156)
.|++.. .++|||+|||+++.+.. ||+|++|++|++++.|
T Consensus 172 ~l~~~~~~~~~tii~~sH~~~~~~~~~d~v~~l~~G~i~~~g 213 (213)
T cd03259 172 ELKELQRELGITTIYVTHDQEEALALADRIAVMNEGRIVQVG 213 (213)
T ss_pred HHHHHHHHcCCEEEEEecCHHHHHHhcCEEEEEECCEEEecC
Confidence 999864 37899999999998754 9999999999999876
|
This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK14267 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.8e-31 Score=295.63 Aligned_cols=198 Identities=28% Similarity=0.382 Sum_probs=166.6
Q ss_pred EEEEEEEEEEcCCCCceeeCCCCCCHHHHHHHHhhcccC-----CCceEEEcCeeCC--CCChHHHhhcCeeeccccccc
Q 037346 948 VNIRHLQVRYAPNLPLVLRGRTGSGKSTLIQTLFRIVES-----TAGHILIDGKDIS--LIGLHDLRTRLSIIPQDPTMF 1020 (1156)
Q Consensus 948 I~~~~Vsf~Y~~~~~~vL~G~SGsGKSTL~~lL~rl~~p-----~~G~I~idG~di~--~i~~~~LR~~i~~VpQdp~LF 1020 (1156)
-.++|++|+..+++.++|.|+||||||||+++|+|+++| ++|+|.+||.++. +.+...+|++++++||++.+|
T Consensus 18 ~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~~~q~~~~~ 97 (253)
T PRK14267 18 HVIKGVDLKIPQNGVFALMGPSGCGKSTLLRTFNRLLELNEEARVEGEVRLFGRNIYSPDVDPIEVRREVGMVFQYPNPF 97 (253)
T ss_pred eeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCcccCCCCceEEEECCEEccccccChHHHhhceeEEecCCccC
Confidence 478999999999998999999999999999999999987 4999999999997 456667889999999999999
Q ss_pred cc-cchhccCCC---CC--CC----HHHHHHHHHHcCCChHH----HhhcCCcccc-------ccccccCCCEEEEecCC
Q 037346 1021 EG-TTRSNLDPL---EE--HA----DEQIWEALDKCQLGDEV----RKKKGKLDSQ-------GRVLLKKSKVLVLDEAT 1079 (1156)
Q Consensus 1021 ~g-TIr~Nl~~~---~~--~~----deei~~al~~~~l~~~i----~~lp~gl~s~-------ARALLr~~~ILiLDEaT 1079 (1156)
.+ |+++|+.+. .. .. ++++.++++.+++.+.+ ...+..|..+ ||||+++|++|||||||
T Consensus 98 ~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEP~ 177 (253)
T PRK14267 98 PHLTIYDNVAIGVKLNGLVKSKKELDERVEWALKKAALWDEVKDRLNDYPSNLSGGQRQRLVIARALAMKPKILLMDEPT 177 (253)
T ss_pred CCCcHHHHHHHHHHhcCccCCHHHHHHHHHHHHHHcCCccchhhhhccChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCC
Confidence 76 999999642 11 01 24578899999986433 2334444433 89999999999999999
Q ss_pred cCCCHHHHHHHHHHHHHhcCCceEEEeecCcccccc-cCEEEEEeCcEEeeecChhHHhcCCCChHH
Q 037346 1080 ASVDTATDNQIQQTLRQHFSDCTVVTIAHRITSVLD-SAMVLLLNHGLIKEYDSPTKLLENKSSSFA 1145 (1156)
Q Consensus 1080 S~LD~~te~~I~~~l~~~~~~~TvI~IaHrl~ti~~-~D~I~Vl~~G~IvE~G~~~eLl~~~~g~f~ 1145 (1156)
++||+.+...+.+.|++..+++|+|+|||+++.+.. ||+|++|++|++++.|+++++++++...|.
T Consensus 178 ~~LD~~~~~~l~~~l~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~~~~~~~ 244 (253)
T PRK14267 178 ANIDPVGTAKIEELLFELKKEYTIVLVTHSPAQAARVSDYVAFLYLGKLIEVGPTRKVFENPEHELT 244 (253)
T ss_pred ccCCHHHHHHHHHHHHHHhhCCEEEEEECCHHHHHhhCCEEEEEECCEEEEeCCHHHHHhCCCcHHH
Confidence 999999999999999988777999999999998765 999999999999999999999865433343
|
|
| >TIGR02769 nickel_nikE nickel import ATP-binding protein NikE | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.5e-31 Score=295.88 Aligned_cols=202 Identities=25% Similarity=0.323 Sum_probs=169.8
Q ss_pred eEEEEEEEEEEcCCCCceeeCCCCCCHHHHHHHHhhcccCCCceEEEcCeeCCCCChHH---HhhcCeeeccccc--cc-
Q 037346 947 EVNIRHLQVRYAPNLPLVLRGRTGSGKSTLIQTLFRIVESTAGHILIDGKDISLIGLHD---LRTRLSIIPQDPT--MF- 1020 (1156)
Q Consensus 947 ~I~~~~Vsf~Y~~~~~~vL~G~SGsGKSTL~~lL~rl~~p~~G~I~idG~di~~i~~~~---LR~~i~~VpQdp~--LF- 1020 (1156)
...++|++|...+++.++|.|+||||||||+++|+|+++|++|+|.+||.++..++... +|+.+++|||+|. ++
T Consensus 24 ~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~~i~~v~q~~~~~~~~ 103 (265)
T TIGR02769 24 APVLTNVSLSIEEGETVGLLGRSGCGKSTLARLLLGLEKPAQGTVSFRGQDLYQLDRKQRRAFRRDVQLVFQDSPSAVNP 103 (265)
T ss_pred eEEeeCceeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEccccCHHHHHHHhhceEEEecChhhhcCC
Confidence 45799999999999999999999999999999999999999999999999998877644 6788999999983 44
Q ss_pred cccchhccCCC-------CC-CCHHHHHHHHHHcCCC-hHHHhhcCCcccc-------ccccccCCCEEEEecCCcCCCH
Q 037346 1021 EGTTRSNLDPL-------EE-HADEQIWEALDKCQLG-DEVRKKKGKLDSQ-------GRVLLKKSKVLVLDEATASVDT 1084 (1156)
Q Consensus 1021 ~gTIr~Nl~~~-------~~-~~deei~~al~~~~l~-~~i~~lp~gl~s~-------ARALLr~~~ILiLDEaTS~LD~ 1084 (1156)
..|+++|+... .. ..++++.++++..++. +.....+..|..+ ||||+.+|+||||||||++||+
T Consensus 104 ~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LSgGe~qrv~laral~~~p~illLDEPt~~LD~ 183 (265)
T TIGR02769 104 RMTVRQIIGEPLRHLTSLDESEQKARIAELLDMVGLRSEDADKLPRQLSGGQLQRINIARALAVKPKLIVLDEAVSNLDM 183 (265)
T ss_pred CCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCChhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCH
Confidence 46999998421 11 1245688999999996 4455555555544 8999999999999999999999
Q ss_pred HHHHHHHHHHHHhcC--CceEEEeecCccccc-ccCEEEEEeCcEEeeecChhHHhcCCCChHHHHH
Q 037346 1085 ATDNQIQQTLRQHFS--DCTVVTIAHRITSVL-DSAMVLLLNHGLIKEYDSPTKLLENKSSSFAQLV 1148 (1156)
Q Consensus 1085 ~te~~I~~~l~~~~~--~~TvI~IaHrl~ti~-~~D~I~Vl~~G~IvE~G~~~eLl~~~~g~f~~l~ 1148 (1156)
++...+.+.|+++.+ ++|+|+|||+++.+. .||+|++|++|++++.|++++++...+..++++.
T Consensus 184 ~~~~~l~~~l~~~~~~~g~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~~~~~~~~~~ 250 (265)
T TIGR02769 184 VLQAVILELLRKLQQAFGTAYLFITHDLRLVQSFCQRVAVMDKGQIVEECDVAQLLSFKHPAGRNLQ 250 (265)
T ss_pred HHHHHHHHHHHHHHHhcCcEEEEEeCCHHHHHHHhcEEEEEeCCEEEEECCHHHHcCCCCHHHHHHH
Confidence 999999999998753 789999999999987 4999999999999999999999875444454454
|
This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. |
| >TIGR03258 PhnT 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.5e-31 Score=307.04 Aligned_cols=195 Identities=20% Similarity=0.348 Sum_probs=170.0
Q ss_pred EEEEEEEEEEcCCCCceeeCCCCCCHHHHHHHHhhcccCCC--ceEEEcCeeCCCCChHHHhhcCeeeccccccccc-cc
Q 037346 948 VNIRHLQVRYAPNLPLVLRGRTGSGKSTLIQTLFRIVESTA--GHILIDGKDISLIGLHDLRTRLSIIPQDPTMFEG-TT 1024 (1156)
Q Consensus 948 I~~~~Vsf~Y~~~~~~vL~G~SGsGKSTL~~lL~rl~~p~~--G~I~idG~di~~i~~~~LR~~i~~VpQdp~LF~g-TI 1024 (1156)
..++|++|...+++.++|.||||||||||+++|.|+++|++ |+|.+||.++.+.+. .++.|++|+|++.+|.. |+
T Consensus 19 ~~l~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~~~~G~i~~~g~~~~~~~~--~~r~ig~vfQ~~~l~p~~tv 96 (362)
T TIGR03258 19 TVLDDLSLEIEAGELLALIGKSGCGKTTLLRAIAGFVKAAGLTGRIAIADRDLTHAPP--HKRGLALLFQNYALFPHLKV 96 (362)
T ss_pred EEEeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCEEEEECCEECCCCCH--HHCCEEEEECCcccCCCCcH
Confidence 35777777777787788999999999999999999999999 999999999987665 35789999999999976 99
Q ss_pred hhccCCCC---CCC----HHHHHHHHHHcCCChHHHhhcCCcccc-------ccccccCCCEEEEecCCcCCCHHHHHHH
Q 037346 1025 RSNLDPLE---EHA----DEQIWEALDKCQLGDEVRKKKGKLDSQ-------GRVLLKKSKVLVLDEATASVDTATDNQI 1090 (1156)
Q Consensus 1025 r~Nl~~~~---~~~----deei~~al~~~~l~~~i~~lp~gl~s~-------ARALLr~~~ILiLDEaTS~LD~~te~~I 1090 (1156)
++||.+.- ..+ ++++.++++.++|.++....|..|..+ ||||+++|++||||||||+||+.+...+
T Consensus 97 ~enl~~~l~~~~~~~~~~~~~v~~~l~~~gL~~~~~~~~~~LSgGq~QRvaLARAL~~~P~llLLDEP~s~LD~~~r~~l 176 (362)
T TIGR03258 97 EDNVAFGLRAQKMPKADIAERVADALKLVGLGDAAAHLPAQLSGGMQQRIAIARAIAIEPDVLLLDEPLSALDANIRANM 176 (362)
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCCchhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCccccCCHHHHHHH
Confidence 99997521 122 345888999999999998888888755 8999999999999999999999999999
Q ss_pred HHHHHHhcC---CceEEEeecCccccc-ccCEEEEEeCcEEeeecChhHHhcCCCChH
Q 037346 1091 QQTLRQHFS---DCTVVTIAHRITSVL-DSAMVLLLNHGLIKEYDSPTKLLENKSSSF 1144 (1156)
Q Consensus 1091 ~~~l~~~~~---~~TvI~IaHrl~ti~-~~D~I~Vl~~G~IvE~G~~~eLl~~~~g~f 1144 (1156)
.+.|++..+ +.|+|+|||+++.+. -||+|+||++|++++.|+|+++..++...|
T Consensus 177 ~~~l~~l~~~~~g~til~vTHd~~ea~~l~dri~vl~~G~i~~~g~~~~~~~~p~~~~ 234 (362)
T TIGR03258 177 REEIAALHEELPELTILCVTHDQDDALTLADKAGIMKDGRLAAHGEPQALYDAPADGF 234 (362)
T ss_pred HHHHHHHHHhCCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhCcCcHH
Confidence 999987654 689999999998865 599999999999999999999998765544
|
This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate. |
| >COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.97 E-value=9.2e-32 Score=299.72 Aligned_cols=197 Identities=23% Similarity=0.364 Sum_probs=173.4
Q ss_pred eEEEEEEEEEEcCCCCceeeCCCCCCHHHHHHHHhhcccCCCceEEEcCeeCCCCChHHHhhcCeeeccccccccc-cch
Q 037346 947 EVNIRHLQVRYAPNLPLVLRGRTGSGKSTLIQTLFRIVESTAGHILIDGKDISLIGLHDLRTRLSIIPQDPTMFEG-TTR 1025 (1156)
Q Consensus 947 ~I~~~~Vsf~Y~~~~~~vL~G~SGsGKSTL~~lL~rl~~p~~G~I~idG~di~~i~~~~LR~~i~~VpQdp~LF~g-TIr 1025 (1156)
...++|+|+...+++-++|-|||||||||++++|+||..|++|+|.+||.|+.+++++ ++.|++|+|+--||.- ||+
T Consensus 18 ~~av~~isl~i~~Gef~~lLGPSGcGKTTlLR~IAGfe~p~~G~I~l~G~~i~~lpp~--kR~ig~VFQ~YALFPHltV~ 95 (352)
T COG3842 18 FTAVDDISLDIKKGEFVTLLGPSGCGKTTLLRMIAGFEQPSSGEILLDGEDITDVPPE--KRPIGMVFQSYALFPHMTVE 95 (352)
T ss_pred eeEEecceeeecCCcEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCChh--hcccceeecCcccCCCCcHH
Confidence 5677788888888887788899999999999999999999999999999999999887 5789999999999965 999
Q ss_pred hccCCCCC----CC----HHHHHHHHHHcCCChHHHhhcCCcccc-------ccccccCCCEEEEecCCcCCCHHHHHHH
Q 037346 1026 SNLDPLEE----HA----DEQIWEALDKCQLGDEVRKKKGKLDSQ-------GRVLLKKSKVLVLDEATASVDTATDNQI 1090 (1156)
Q Consensus 1026 ~Nl~~~~~----~~----deei~~al~~~~l~~~i~~lp~gl~s~-------ARALLr~~~ILiLDEaTS~LD~~te~~I 1090 (1156)
+|+.++=. .. ++.+.++|+.++|.++-...|..|.-+ ||||..+|++|+||||-|+||.+-...+
T Consensus 96 ~NVafGLk~~~~~~~~~i~~rv~e~L~lV~L~~~~~R~p~qLSGGQqQRVALARAL~~~P~vLLLDEPlSaLD~kLR~~m 175 (352)
T COG3842 96 ENVAFGLKVRKKLKKAEIKARVEEALELVGLEGFADRKPHQLSGGQQQRVALARALVPEPKVLLLDEPLSALDAKLREQM 175 (352)
T ss_pred HHhhhhhhhcCCCCHHHHHHHHHHHHHHcCchhhhhhChhhhChHHHHHHHHHHHhhcCcchhhhcCcccchhHHHHHHH
Confidence 99987521 22 246899999999999999988888755 8999999999999999999999999999
Q ss_pred HHHHHHhc--CCceEEEeecCcc-cccccCEEEEEeCcEEeeecChhHHhcCCCChHH
Q 037346 1091 QQTLRQHF--SDCTVVTIAHRIT-SVLDSAMVLLLNHGLIKEYDSPTKLLENKSSSFA 1145 (1156)
Q Consensus 1091 ~~~l~~~~--~~~TvI~IaHrl~-ti~~~D~I~Vl~~G~IvE~G~~~eLl~~~~g~f~ 1145 (1156)
+.-+++.. .+.|.|.|||+-+ .+.-+|||.||++|+|...|+|+|+..++...|-
T Consensus 176 r~Elk~lq~~~giT~i~VTHDqeEAl~msDrI~Vm~~G~I~Q~gtP~eiY~~P~~~fV 233 (352)
T COG3842 176 RKELKELQRELGITFVYVTHDQEEALAMSDRIAVMNDGRIEQVGTPEEIYERPATRFV 233 (352)
T ss_pred HHHHHHHHHhcCCeEEEEECCHHHHhhhccceEEccCCceeecCCHHHHhhCcchHHH
Confidence 98887654 3789999999975 4667999999999999999999999998776553
|
|
| >PRK13633 cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.5e-31 Score=299.83 Aligned_cols=192 Identities=20% Similarity=0.369 Sum_probs=171.2
Q ss_pred EEEEEEEEEEcCCCCceeeCCCCCCHHHHHHHHhhcccCCCceEEEcCeeCCCCC-hHHHhhcCeeeccccc--cccccc
Q 037346 948 VNIRHLQVRYAPNLPLVLRGRTGSGKSTLIQTLFRIVESTAGHILIDGKDISLIG-LHDLRTRLSIIPQDPT--MFEGTT 1024 (1156)
Q Consensus 948 I~~~~Vsf~Y~~~~~~vL~G~SGsGKSTL~~lL~rl~~p~~G~I~idG~di~~i~-~~~LR~~i~~VpQdp~--LF~gTI 1024 (1156)
-.++||+|...+++.++|.|+||||||||+++|.|+++|++|+|.+||.++.+.+ ...+|+++++|||+|. +|..|+
T Consensus 24 ~vl~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~i~g~~i~~~~~~~~~~~~i~~v~q~~~~~~~~~~v 103 (280)
T PRK13633 24 LALDDVNLEVKKGEFLVILGRNGSGKSTIAKHMNALLIPSEGKVYVDGLDTSDEENLWDIRNKAGMVFQNPDNQIVATIV 103 (280)
T ss_pred ceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEeccccccHHHHhhheEEEecChhhhhccccH
Confidence 4899999999999989999999999999999999999999999999999998654 4567899999999984 777789
Q ss_pred hhccCCCCC---CC----HHHHHHHHHHcCCChHHHhhcCCcccc-------ccccccCCCEEEEecCCcCCCHHHHHHH
Q 037346 1025 RSNLDPLEE---HA----DEQIWEALDKCQLGDEVRKKKGKLDSQ-------GRVLLKKSKVLVLDEATASVDTATDNQI 1090 (1156)
Q Consensus 1025 r~Nl~~~~~---~~----deei~~al~~~~l~~~i~~lp~gl~s~-------ARALLr~~~ILiLDEaTS~LD~~te~~I 1090 (1156)
.+|+.+... .. ++++.++++.+++.++....|..|..+ ||||+++|++|||||||++||+.+...+
T Consensus 104 ~~~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~gLD~~~~~~l 183 (280)
T PRK13633 104 EEDVAFGPENLGIPPEEIRERVDESLKKVGMYEYRRHAPHLLSGGQKQRVAIAGILAMRPECIIFDEPTAMLDPSGRREV 183 (280)
T ss_pred HHHHHhhHhhcCCCHHHHHHHHHHHHHHCCCHhHhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHH
Confidence 999965321 12 356889999999999988888888766 8999999999999999999999999999
Q ss_pred HHHHHHhc--CCceEEEeecCcccccccCEEEEEeCcEEeeecChhHHhcC
Q 037346 1091 QQTLRQHF--SDCTVVTIAHRITSVLDSAMVLLLNHGLIKEYDSPTKLLEN 1139 (1156)
Q Consensus 1091 ~~~l~~~~--~~~TvI~IaHrl~ti~~~D~I~Vl~~G~IvE~G~~~eLl~~ 1139 (1156)
.+.|+++. .++|||+|||+++.+..||+|++|++|+|++.|+++++..+
T Consensus 184 ~~~l~~l~~~~g~tillvtH~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~ 234 (280)
T PRK13633 184 VNTIKELNKKYGITIILITHYMEEAVEADRIIVMDSGKVVMEGTPKEIFKE 234 (280)
T ss_pred HHHHHHHHHhcCCEEEEEecChHHHhcCCEEEEEECCEEEEecCHHHHhcC
Confidence 99999874 37899999999999988999999999999999999999864
|
|
| >PRK14247 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.9e-31 Score=293.34 Aligned_cols=198 Identities=28% Similarity=0.382 Sum_probs=168.8
Q ss_pred EEEEEEEEEEcCCCCceeeCCCCCCHHHHHHHHhhcccC-----CCceEEEcCeeCCCCChHHHhhcCeeeccccccc-c
Q 037346 948 VNIRHLQVRYAPNLPLVLRGRTGSGKSTLIQTLFRIVES-----TAGHILIDGKDISLIGLHDLRTRLSIIPQDPTMF-E 1021 (1156)
Q Consensus 948 I~~~~Vsf~Y~~~~~~vL~G~SGsGKSTL~~lL~rl~~p-----~~G~I~idG~di~~i~~~~LR~~i~~VpQdp~LF-~ 1021 (1156)
..++|++|+.++++.++|.|+||||||||+++|.|+++| ++|+|.+||.++.+.+...+|+.++++||+|.+| +
T Consensus 17 ~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~i~~v~q~~~~~~~ 96 (250)
T PRK14247 17 EVLDGVNLEIPDNTITALMGPSGSGKSTLLRVFNRLIELYPEARVSGEVYLDGQDIFKMDVIELRRRVQMVFQIPNPIPN 96 (250)
T ss_pred eeeecceeEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCCCCceEEEECCEECCcCCHHHHhccEEEEeccCccCCC
Confidence 478999999999999999999999999999999999974 6999999999999888888999999999999755 6
Q ss_pred ccchhccCCCC---C---C---CHHHHHHHHHHcCCChHH----HhhcCCcccc-------ccccccCCCEEEEecCCcC
Q 037346 1022 GTTRSNLDPLE---E---H---ADEQIWEALDKCQLGDEV----RKKKGKLDSQ-------GRVLLKKSKVLVLDEATAS 1081 (1156)
Q Consensus 1022 gTIr~Nl~~~~---~---~---~deei~~al~~~~l~~~i----~~lp~gl~s~-------ARALLr~~~ILiLDEaTS~ 1081 (1156)
.|+++|+.+.. . . .++++.++++.+++.+.+ ...+..|..+ ||||+++|+||||||||++
T Consensus 97 ~tv~enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgG~~qrv~laral~~~p~lllLDEP~~~ 176 (250)
T PRK14247 97 LSIFENVALGLKLNRLVKSKKELQERVRWALEKAQLWDEVKDRLDAPAGKLSGGQQQRLCIARALAFQPEVLLADEPTAN 176 (250)
T ss_pred CcHHHHHHHHHHhccccCCHHHHHHHHHHHHHHcCCCcchhhhhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCCcc
Confidence 79999996421 1 1 135688999999986543 3334444433 8999999999999999999
Q ss_pred CCHHHHHHHHHHHHHhcCCceEEEeecCccccc-ccCEEEEEeCcEEeeecChhHHhcCCCChHH
Q 037346 1082 VDTATDNQIQQTLRQHFSDCTVVTIAHRITSVL-DSAMVLLLNHGLIKEYDSPTKLLENKSSSFA 1145 (1156)
Q Consensus 1082 LD~~te~~I~~~l~~~~~~~TvI~IaHrl~ti~-~~D~I~Vl~~G~IvE~G~~~eLl~~~~g~f~ 1145 (1156)
||+.+...+.+.|++..+++|+|+|+|+++.+. .||+|++|++|++++.|+++++.+++...+.
T Consensus 177 LD~~~~~~l~~~l~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~~~~~~~ 241 (250)
T PRK14247 177 LDPENTAKIESLFLELKKDMTIVLVTHFPQQAARISDYVAFLYKGQIVEWGPTREVFTNPRHELT 241 (250)
T ss_pred CCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEECCeEEEECCHHHHHcCCccHHH
Confidence 999999999999998877899999999999875 5999999999999999999999876544343
|
|
| >PRK14242 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.9e-31 Score=295.28 Aligned_cols=194 Identities=22% Similarity=0.372 Sum_probs=163.6
Q ss_pred EEEEEEEEEEcCCCCceeeCCCCCCHHHHHHHHhhccc-----CCCceEEEcCeeCCC--CChHHHhhcCeeeccccccc
Q 037346 948 VNIRHLQVRYAPNLPLVLRGRTGSGKSTLIQTLFRIVE-----STAGHILIDGKDISL--IGLHDLRTRLSIIPQDPTMF 1020 (1156)
Q Consensus 948 I~~~~Vsf~Y~~~~~~vL~G~SGsGKSTL~~lL~rl~~-----p~~G~I~idG~di~~--i~~~~LR~~i~~VpQdp~LF 1020 (1156)
..++|++|+..+++.++|.|+||||||||+++|+|+++ |++|+|.+||.++.. .+...+|++++||||++.+|
T Consensus 20 ~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~~~~ 99 (253)
T PRK14242 20 QALHDISLEFEQNQVTALIGPSGCGKSTFLRCLNRMNDLIPGARVEGEILLDGENIYDPHVDVVELRRRVGMVFQKPNPF 99 (253)
T ss_pred eeecceeEEEeCCCEEEEECCCCCCHHHHHHHHHhhcccCCCCCCceEEEECCEEccccccCHHHHhhcEEEEecCCCCC
Confidence 35777777777788788999999999999999999975 589999999999875 34567889999999999999
Q ss_pred cccchhccCCC----CC----CCHHHHHHHHHHcCCChHH----HhhcCCcccc-------ccccccCCCEEEEecCCcC
Q 037346 1021 EGTTRSNLDPL----EE----HADEQIWEALDKCQLGDEV----RKKKGKLDSQ-------GRVLLKKSKVLVLDEATAS 1081 (1156)
Q Consensus 1021 ~gTIr~Nl~~~----~~----~~deei~~al~~~~l~~~i----~~lp~gl~s~-------ARALLr~~~ILiLDEaTS~ 1081 (1156)
..|+++|+.+. .. ..++++.++++.+++.+.+ ...+..|..+ ||||+++|+||||||||++
T Consensus 100 ~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgGq~qrv~laral~~~p~llllDEPt~~ 179 (253)
T PRK14242 100 PKSIFENVAYGLRVNGVKDKAYLAERVERSLRHAALWDEVKDRLHESALGLSGGQQQRLCIARALAVEPEVLLMDEPASA 179 (253)
T ss_pred cCcHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCchhhhHHhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCccc
Confidence 99999999642 11 1235688899999997643 3334444433 8999999999999999999
Q ss_pred CCHHHHHHHHHHHHHhcCCceEEEeecCccccc-ccCEEEEEeCcEEeeecChhHHhcCCC
Q 037346 1082 VDTATDNQIQQTLRQHFSDCTVVTIAHRITSVL-DSAMVLLLNHGLIKEYDSPTKLLENKS 1141 (1156)
Q Consensus 1082 LD~~te~~I~~~l~~~~~~~TvI~IaHrl~ti~-~~D~I~Vl~~G~IvE~G~~~eLl~~~~ 1141 (1156)
||+.+...+.+.|++..+++|||++||+++.+. .||+|++|++|+|++.|+++++.+.+.
T Consensus 180 LD~~~~~~l~~~l~~~~~~~tvii~tH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~~~ 240 (253)
T PRK14242 180 LDPIATQKIEELIHELKARYTIIIVTHNMQQAARVSDVTAFFYMGKLIEVGPTEQIFTRPR 240 (253)
T ss_pred CCHHHHHHHHHHHHHHhcCCeEEEEEecHHHHHHhCCEEEEEECCEEEEeCCHHHHHcCCC
Confidence 999999999999998866789999999999885 599999999999999999999986543
|
|
| >cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin | Back alignment and domain information |
|---|
Probab=99.97 E-value=2e-31 Score=288.79 Aligned_cols=188 Identities=24% Similarity=0.325 Sum_probs=164.9
Q ss_pred EEEEEEEEEEcCCCCceeeCCCCCCHHHHHHHHhhcccCCCceEEEcCeeCCCCChHHHhhcCeeeccccccccc-cchh
Q 037346 948 VNIRHLQVRYAPNLPLVLRGRTGSGKSTLIQTLFRIVESTAGHILIDGKDISLIGLHDLRTRLSIIPQDPTMFEG-TTRS 1026 (1156)
Q Consensus 948 I~~~~Vsf~Y~~~~~~vL~G~SGsGKSTL~~lL~rl~~p~~G~I~idG~di~~i~~~~LR~~i~~VpQdp~LF~g-TIr~ 1026 (1156)
-.++|++|...+++.++|.|+||||||||+++|+|+++|++|+|.++|.++... ...+|++++|+||++.+|.+ |+++
T Consensus 14 ~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~-~~~~~~~i~~~~q~~~~~~~~tv~~ 92 (220)
T cd03265 14 EAVRGVSFRVRRGEIFGLLGPNGAGKTTTIKMLTTLLKPTSGRATVAGHDVVRE-PREVRRRIGIVFQDLSVDDELTGWE 92 (220)
T ss_pred EeeeceeEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEecCcC-hHHHhhcEEEecCCccccccCcHHH
Confidence 478999999999999999999999999999999999999999999999998763 35678899999999998875 9999
Q ss_pred ccCCC----CC-C--CHHHHHHHHHHcCCChHHHhhcCCcccc-------ccccccCCCEEEEecCCcCCCHHHHHHHHH
Q 037346 1027 NLDPL----EE-H--ADEQIWEALDKCQLGDEVRKKKGKLDSQ-------GRVLLKKSKVLVLDEATASVDTATDNQIQQ 1092 (1156)
Q Consensus 1027 Nl~~~----~~-~--~deei~~al~~~~l~~~i~~lp~gl~s~-------ARALLr~~~ILiLDEaTS~LD~~te~~I~~ 1092 (1156)
|+.+. +. . .++++.++++.+++.+.....|..|..+ |||++.+|++|||||||++||+++.+.+.+
T Consensus 93 ~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qr~~la~al~~~p~llllDEPt~~LD~~~~~~l~~ 172 (220)
T cd03265 93 NLYIHARLYGVPGAERRERIDELLDFVGLLEAADRLVKTYSGGMRRRLEIARSLVHRPEVLFLDEPTIGLDPQTRAHVWE 172 (220)
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCccCCCHHHHHHHHH
Confidence 99542 11 1 2356889999999988877777766655 899999999999999999999999999999
Q ss_pred HHHHhcC--CceEEEeecCcccccc-cCEEEEEeCcEEeeecChhHH
Q 037346 1093 TLRQHFS--DCTVVTIAHRITSVLD-SAMVLLLNHGLIKEYDSPTKL 1136 (1156)
Q Consensus 1093 ~l~~~~~--~~TvI~IaHrl~ti~~-~D~I~Vl~~G~IvE~G~~~eL 1136 (1156)
.|++..+ ++|||+|+|+++.+.. ||+|++|++|+|++.|+++++
T Consensus 173 ~l~~~~~~~~~tvi~~tH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~ 219 (220)
T cd03265 173 YIEKLKEEFGMTILLTTHYMEEAEQLCDRVAIIDHGRIIAEGTPEEL 219 (220)
T ss_pred HHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeCCEEEEeCChHHc
Confidence 9988653 6899999999998865 999999999999999998874
|
In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK14251 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.1e-31 Score=294.72 Aligned_cols=198 Identities=21% Similarity=0.339 Sum_probs=165.9
Q ss_pred EEEEEEEEEEcCCCCceeeCCCCCCHHHHHHHHhhccc-----CCCceEEEcCeeCCC--CChHHHhhcCeeeccccccc
Q 037346 948 VNIRHLQVRYAPNLPLVLRGRTGSGKSTLIQTLFRIVE-----STAGHILIDGKDISL--IGLHDLRTRLSIIPQDPTMF 1020 (1156)
Q Consensus 948 I~~~~Vsf~Y~~~~~~vL~G~SGsGKSTL~~lL~rl~~-----p~~G~I~idG~di~~--i~~~~LR~~i~~VpQdp~LF 1020 (1156)
-.++|++|...+++.++|.|+||||||||+++|+|+++ |++|+|.+||.++.. .+...+|+.+++++|++.+|
T Consensus 18 ~~l~~~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~~~~G~v~i~g~~~~~~~~~~~~~~~~i~~~~q~~~~~ 97 (251)
T PRK14251 18 EALHGISLDFEEKELTALIGPSGCGKSTFLRCLNRMNDDIENIKITGEIKFEGQNIYGSKMDLVELRKEVGMVFQQPTPF 97 (251)
T ss_pred eeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhhccccccCCCcceEEEECCEEcccccchHHHhhccEEEEecCCccC
Confidence 47888999988898889999999999999999999997 479999999999864 34567788999999999999
Q ss_pred cccchhccCCCC---CC-----CHHHHHHHHHHcCCCh----HHHhhcCCcccc-------ccccccCCCEEEEecCCcC
Q 037346 1021 EGTTRSNLDPLE---EH-----ADEQIWEALDKCQLGD----EVRKKKGKLDSQ-------GRVLLKKSKVLVLDEATAS 1081 (1156)
Q Consensus 1021 ~gTIr~Nl~~~~---~~-----~deei~~al~~~~l~~----~i~~lp~gl~s~-------ARALLr~~~ILiLDEaTS~ 1081 (1156)
+.|+++|+.+.. .. .++++.++++.++++. .....+..|..+ ||||+++|++|||||||++
T Consensus 98 ~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~qr~~laral~~~p~llllDEP~~~ 177 (251)
T PRK14251 98 PFSVYDNVAYGLKIAGVKDKELIDQRVEESLKQAAIWKETKDNLDRNAQAFSGGQQQRICIARALAVRPKVVLLDEPTSA 177 (251)
T ss_pred CCcHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCCcchHHHhccChhhCCHHHHHHHHHHHHHhcCCCEEEecCCCcc
Confidence 999999997431 11 1345778899999853 233334444433 8999999999999999999
Q ss_pred CCHHHHHHHHHHHHHhcCCceEEEeecCcccccc-cCEEEEEeCcEEeeecChhHHhcCCCChHH
Q 037346 1082 VDTATDNQIQQTLRQHFSDCTVVTIAHRITSVLD-SAMVLLLNHGLIKEYDSPTKLLENKSSSFA 1145 (1156)
Q Consensus 1082 LD~~te~~I~~~l~~~~~~~TvI~IaHrl~ti~~-~D~I~Vl~~G~IvE~G~~~eLl~~~~g~f~ 1145 (1156)
||+++...+.+.|++..+++|+|+|||+++.+.. ||+|++|++|++++.|+++++...+.-.|.
T Consensus 178 LD~~~~~~l~~~l~~~~~~~tiiiisH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~~~~~~~ 242 (251)
T PRK14251 178 LDPISSSEIEETLMELKHQYTFIMVTHNLQQAGRISDQTAFLMNGDLIEAGPTEEMFIAPKKQIT 242 (251)
T ss_pred CCHHHHHHHHHHHHHHHcCCeEEEEECCHHHHHhhcCEEEEEECCEEEEeCCHHHHHhCCCCHHH
Confidence 9999999999999988777899999999998765 999999999999999999999865443343
|
|
| >PRK13644 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=2e-31 Score=297.53 Aligned_cols=191 Identities=21% Similarity=0.347 Sum_probs=169.7
Q ss_pred EEEEEEEEEcCCCCceeeCCCCCCHHHHHHHHhhcccCCCceEEEcCeeCCCCC-hHHHhhcCeeeccccc--cccccch
Q 037346 949 NIRHLQVRYAPNLPLVLRGRTGSGKSTLIQTLFRIVESTAGHILIDGKDISLIG-LHDLRTRLSIIPQDPT--MFEGTTR 1025 (1156)
Q Consensus 949 ~~~~Vsf~Y~~~~~~vL~G~SGsGKSTL~~lL~rl~~p~~G~I~idG~di~~i~-~~~LR~~i~~VpQdp~--LF~gTIr 1025 (1156)
.++||+|+..+++.++|.|+||||||||+++|+|+++|++|+|.++|.++...+ ...+|+.++++||+|. ++..|++
T Consensus 17 ~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~tv~ 96 (274)
T PRK13644 17 ALENINLVIKKGEYIGIIGKNGSGKSTLALHLNGLLRPQKGKVLVSGIDTGDFSKLQGIRKLVGIVFQNPETQFVGRTVE 96 (274)
T ss_pred eeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEECCccccHHHHHhheEEEEEChhhhcccchHH
Confidence 789999999999999999999999999999999999999999999999998775 4678889999999985 6778999
Q ss_pred hccCCCCC---CC----HHHHHHHHHHcCCChHHHhhcCCcccc-------ccccccCCCEEEEecCCcCCCHHHHHHHH
Q 037346 1026 SNLDPLEE---HA----DEQIWEALDKCQLGDEVRKKKGKLDSQ-------GRVLLKKSKVLVLDEATASVDTATDNQIQ 1091 (1156)
Q Consensus 1026 ~Nl~~~~~---~~----deei~~al~~~~l~~~i~~lp~gl~s~-------ARALLr~~~ILiLDEaTS~LD~~te~~I~ 1091 (1156)
+||.+... .+ ++++.++++..++.++....|..|..+ ||||+++|+||||||||++||+.+...+.
T Consensus 97 enl~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~laral~~~p~lllLDEPt~gLD~~~~~~l~ 176 (274)
T PRK13644 97 EDLAFGPENLCLPPIEIRKRVDRALAEIGLEKYRHRSPKTLSGGQGQCVALAGILTMEPECLIFDEVTSMLDPDSGIAVL 176 (274)
T ss_pred HHHHhhHHHcCCCHHHHHHHHHHHHHHCCCHHHhcCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHH
Confidence 99975321 12 356788999999988887777766654 89999999999999999999999999999
Q ss_pred HHHHHhc-CCceEEEeecCcccccccCEEEEEeCcEEeeecChhHHhcC
Q 037346 1092 QTLRQHF-SDCTVVTIAHRITSVLDSAMVLLLNHGLIKEYDSPTKLLEN 1139 (1156)
Q Consensus 1092 ~~l~~~~-~~~TvI~IaHrl~ti~~~D~I~Vl~~G~IvE~G~~~eLl~~ 1139 (1156)
+.|+++. +++|+|++||+++.+..||+|++|++|++++.|+++++...
T Consensus 177 ~~l~~l~~~g~til~~tH~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~ 225 (274)
T PRK13644 177 ERIKKLHEKGKTIVYITHNLEELHDADRIIVMDRGKIVLEGEPENVLSD 225 (274)
T ss_pred HHHHHHHhCCCEEEEEecCHHHHhhCCEEEEEECCEEEEECCHHHHhcC
Confidence 9998764 47899999999999999999999999999999999998754
|
|
| >PRK11124 artP arginine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.2e-31 Score=292.76 Aligned_cols=192 Identities=22% Similarity=0.311 Sum_probs=167.2
Q ss_pred EEEEEEEEEEcCCCCceeeCCCCCCHHHHHHHHhhcccCCCceEEEcCeeCC------CCChHHHhhcCeeecccccccc
Q 037346 948 VNIRHLQVRYAPNLPLVLRGRTGSGKSTLIQTLFRIVESTAGHILIDGKDIS------LIGLHDLRTRLSIIPQDPTMFE 1021 (1156)
Q Consensus 948 I~~~~Vsf~Y~~~~~~vL~G~SGsGKSTL~~lL~rl~~p~~G~I~idG~di~------~i~~~~LR~~i~~VpQdp~LF~ 1021 (1156)
-.++||+|+..+++.++|.|+||||||||+++|+|+++|++|+|.+||.++. ......+|++++|+||++.+|.
T Consensus 16 ~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~ 95 (242)
T PRK11124 16 QALFDITLDCPQGETLVLLGPSGAGKSSLLRVLNLLEMPRSGTLNIAGNHFDFSKTPSDKAIRELRRNVGMVFQQYNLWP 95 (242)
T ss_pred eeEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEecccccccchhhHHHHHhheEEEecCccccC
Confidence 3789999999999999999999999999999999999999999999999874 2234677889999999999997
Q ss_pred c-cchhccCCC-----CCC---CHHHHHHHHHHcCCChHHHhhcCCcccc-------ccccccCCCEEEEecCCcCCCHH
Q 037346 1022 G-TTRSNLDPL-----EEH---ADEQIWEALDKCQLGDEVRKKKGKLDSQ-------GRVLLKKSKVLVLDEATASVDTA 1085 (1156)
Q Consensus 1022 g-TIr~Nl~~~-----~~~---~deei~~al~~~~l~~~i~~lp~gl~s~-------ARALLr~~~ILiLDEaTS~LD~~ 1085 (1156)
+ |+++|+..+ +.. ..+++.++++..++.+++...|..|..+ |||++++|+||||||||++||++
T Consensus 96 ~~tv~e~i~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~laral~~~p~llilDEPt~~LD~~ 175 (242)
T PRK11124 96 HLTVQQNLIEAPCRVLGLSKDQALARAEKLLERLRLKPYADRFPLHLSGGQQQRVAIARALMMEPQVLLFDEPTAALDPE 175 (242)
T ss_pred CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCCcCCHH
Confidence 5 999999631 111 1345788899999988888878777755 89999999999999999999999
Q ss_pred HHHHHHHHHHHhc-CCceEEEeecCcccccc-cCEEEEEeCcEEeeecChhHHhcC
Q 037346 1086 TDNQIQQTLRQHF-SDCTVVTIAHRITSVLD-SAMVLLLNHGLIKEYDSPTKLLEN 1139 (1156)
Q Consensus 1086 te~~I~~~l~~~~-~~~TvI~IaHrl~ti~~-~D~I~Vl~~G~IvE~G~~~eLl~~ 1139 (1156)
+...+.+.|++.. +++|+|++||+++.+.. ||+|++|++|++++.|+++++.+.
T Consensus 176 ~~~~l~~~l~~~~~~~~tii~~sh~~~~~~~~~d~i~~l~~g~i~~~~~~~~~~~~ 231 (242)
T PRK11124 176 ITAQIVSIIRELAETGITQVIVTHEVEVARKTASRVVYMENGHIVEQGDASCFTQP 231 (242)
T ss_pred HHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCEEEEEECCEEEEeCCHHHhcCc
Confidence 9999999998865 37899999999999865 999999999999999999987653
|
|
| >PRK14268 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.3e-31 Score=295.18 Aligned_cols=197 Identities=23% Similarity=0.349 Sum_probs=164.4
Q ss_pred EEEEEEEEEEcCCCCceeeCCCCCCHHHHHHHHhhcccC-----CCceEEEcCeeCCCC--ChHHHhhcCeeeccccccc
Q 037346 948 VNIRHLQVRYAPNLPLVLRGRTGSGKSTLIQTLFRIVES-----TAGHILIDGKDISLI--GLHDLRTRLSIIPQDPTMF 1020 (1156)
Q Consensus 948 I~~~~Vsf~Y~~~~~~vL~G~SGsGKSTL~~lL~rl~~p-----~~G~I~idG~di~~i--~~~~LR~~i~~VpQdp~LF 1020 (1156)
..++|++|+..+++.++|.|+||||||||+++|+|+++| ++|+|.+||.++... +...+|+.++||||++.+|
T Consensus 26 ~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~~~~ 105 (258)
T PRK14268 26 QALKNVSMQIPKNSVTALIGPSGCGKSTFIRCLNRMNDLIKNCRIEGKVSIEGEDIYEPDVDVVELRKNVGMVFQKPNPF 105 (258)
T ss_pred eeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCcccCCCcceEEEECCEEcccccchHHHHhhhEEEEecCCccC
Confidence 467888888888888889999999999999999999985 799999999998753 3456788999999999999
Q ss_pred cccchhccCCCC---CCC----HHHHHHHHHHcCCChH----HHhhcCCcccc-------ccccccCCCEEEEecCCcCC
Q 037346 1021 EGTTRSNLDPLE---EHA----DEQIWEALDKCQLGDE----VRKKKGKLDSQ-------GRVLLKKSKVLVLDEATASV 1082 (1156)
Q Consensus 1021 ~gTIr~Nl~~~~---~~~----deei~~al~~~~l~~~----i~~lp~gl~s~-------ARALLr~~~ILiLDEaTS~L 1082 (1156)
..|+++|+.+.. ..+ ++++.++++.+++.+. ....+..|..+ ||||+++|+||||||||++|
T Consensus 106 ~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgG~~qrv~laral~~~p~llllDEPt~~L 185 (258)
T PRK14268 106 PMSIYDNVAYGPRIHGANKKDLDGVVENALRSAALWDETSDRLKSPALSLSGGQQQRLCIARTLAVKPKIILFDEPTSAL 185 (258)
T ss_pred cccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCCcchhhhhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCCccc
Confidence 999999996421 122 2357889999998532 23333344433 89999999999999999999
Q ss_pred CHHHHHHHHHHHHHhcCCceEEEeecCcccccc-cCEEEEEeCcEEeeecChhHHhcCCCChH
Q 037346 1083 DTATDNQIQQTLRQHFSDCTVVTIAHRITSVLD-SAMVLLLNHGLIKEYDSPTKLLENKSSSF 1144 (1156)
Q Consensus 1083 D~~te~~I~~~l~~~~~~~TvI~IaHrl~ti~~-~D~I~Vl~~G~IvE~G~~~eLl~~~~g~f 1144 (1156)
|+++...+.+.|+++.+++|+|+|||+++.+.+ ||+|++|++|+|++.|+++++.+++...|
T Consensus 186 D~~~~~~l~~~l~~l~~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~~~~~~ 248 (258)
T PRK14268 186 DPISTARIEDLIMNLKKDYTIVIVTHNMQQAARISDYTGFFLMGELIEFGQTRQIFHNPREKS 248 (258)
T ss_pred CHHHHHHHHHHHHHHhhCCEEEEEECCHHHHHHhCCEEEEEECCEEEEeCCHHHHhcCCCCHH
Confidence 999999999999988678999999999998865 99999999999999999999987654443
|
|
| >PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.7e-31 Score=293.23 Aligned_cols=193 Identities=23% Similarity=0.351 Sum_probs=168.9
Q ss_pred EEEEEEEEEEcCCCCceeeCCCCCCHHHHHHHHhhcccCCCceEEEcCeeCCCC--ChHHHhhcCeeecccccccc-ccc
Q 037346 948 VNIRHLQVRYAPNLPLVLRGRTGSGKSTLIQTLFRIVESTAGHILIDGKDISLI--GLHDLRTRLSIIPQDPTMFE-GTT 1024 (1156)
Q Consensus 948 I~~~~Vsf~Y~~~~~~vL~G~SGsGKSTL~~lL~rl~~p~~G~I~idG~di~~i--~~~~LR~~i~~VpQdp~LF~-gTI 1024 (1156)
-.++|++|...+++.++|.|+||||||||+++|+|+++|++|+|.+||.++... +...+|++++|+||++.+|. .|+
T Consensus 15 ~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv 94 (240)
T PRK09493 15 QVLHNIDLNIDQGEVVVIIGPSGSGKSTLLRCINKLEEITSGDLIVDGLKVNDPKVDERLIRQEAGMVFQQFYLFPHLTA 94 (240)
T ss_pred EEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCChhHHHHhhceEEEecccccCCCCcH
Confidence 369999999999999999999999999999999999999999999999999864 34577889999999999886 599
Q ss_pred hhccCCCC----CC----CHHHHHHHHHHcCCChHHHhhcCCcccc-------ccccccCCCEEEEecCCcCCCHHHHHH
Q 037346 1025 RSNLDPLE----EH----ADEQIWEALDKCQLGDEVRKKKGKLDSQ-------GRVLLKKSKVLVLDEATASVDTATDNQ 1089 (1156)
Q Consensus 1025 r~Nl~~~~----~~----~deei~~al~~~~l~~~i~~lp~gl~s~-------ARALLr~~~ILiLDEaTS~LD~~te~~ 1089 (1156)
++|+.+.. .. .++++.++++..++.+.....|..|..+ |||++++|+||||||||++||+++...
T Consensus 95 ~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDEP~~~LD~~~~~~ 174 (240)
T PRK09493 95 LENVMFGPLRVRGASKEEAEKQARELLAKVGLAERAHHYPSELSGGQQQRVAIARALAVKPKLMLFDEPTSALDPELRHE 174 (240)
T ss_pred HHHHHhHHHHhcCCCHHHHHHHHHHHHHHcCChHHHhcChhhcCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHH
Confidence 99996531 11 1345788999999988877777777655 899999999999999999999999999
Q ss_pred HHHHHHHhc-CCceEEEeecCcccccc-cCEEEEEeCcEEeeecChhHHhcCC
Q 037346 1090 IQQTLRQHF-SDCTVVTIAHRITSVLD-SAMVLLLNHGLIKEYDSPTKLLENK 1140 (1156)
Q Consensus 1090 I~~~l~~~~-~~~TvI~IaHrl~ti~~-~D~I~Vl~~G~IvE~G~~~eLl~~~ 1140 (1156)
+.+.|++.. +++|+|+|||+++.+.. ||+|++|++|++++.|+++++++++
T Consensus 175 l~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~~ 227 (240)
T PRK09493 175 VLKVMQDLAEEGMTMVIVTHEIGFAEKVASRLIFIDKGRIAEDGDPQVLIKNP 227 (240)
T ss_pred HHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEeeCCHHHHhcCC
Confidence 999998864 47899999999999864 9999999999999999999988643
|
|
| >COG1119 ModF ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.5e-31 Score=273.51 Aligned_cols=195 Identities=25% Similarity=0.408 Sum_probs=159.3
Q ss_pred CCccEEEeeeEEEeCCCCCCCccccceEEeeCCeEEEEEcCCCCChHHHHHHHhCCCCCCCcEEEEcCe-----------
Q 037346 354 SDTAIEIIDGSFSWDFSSPNPTLRNINLKVFHGMRVAVCGTVGSGKSSCLSCILGGVPKESGIIRLCGT----------- 422 (1156)
Q Consensus 354 ~~~~i~~~~~~f~~~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKSTll~~i~g~~~~~~G~i~~~g~----------- 422 (1156)
.+..|+++|+++.|. ++++|+|+|++|++||..+|+|||||||||||++++|+++|++|.+.+.|+
T Consensus 28 ~~~li~l~~v~v~r~---gk~iL~~isW~V~~ge~W~I~G~NGsGKTTLL~ll~~~~~pssg~~~~~G~~~G~~~~~~el 104 (257)
T COG1119 28 NEPLIELKNVSVRRN---GKKILGDLSWQVNPGEHWAIVGPNGAGKTTLLSLLTGEHPPSSGDVTLLGRRFGKGETIFEL 104 (257)
T ss_pred CcceEEecceEEEEC---CEeeccccceeecCCCcEEEECCCCCCHHHHHHHHhcccCCCCCceeeeeeeccCCcchHHH
Confidence 345699999999996 678999999999999999999999999999999999999999999988773
Q ss_pred ---EEEEecCC---cCCCccHHHHhhcC---------CCCCHHHH---HHHHHHhCCchhhhhCCCCCccccccCCCCCC
Q 037346 423 ---KAYVAQSP---WIQSGKIEENILFG---------KEMDRERY---ERVLEACSLKKDLEVLPFGDQTIIGERGINLS 484 (1156)
Q Consensus 423 ---~~~v~Q~~---~~~~~ti~eni~~~---------~~~~~~~~---~~~~~~~~l~~~~~~~~~g~~t~v~~~g~~LS 484 (1156)
||||+-+- ...+.+++|-|+-| .+++++.+ ...++.+++.+ ..++...+||
T Consensus 105 rk~IG~vS~~L~~~~~~~~~v~dvVlSg~~~siG~y~~~~~~~~~~~a~~lle~~g~~~-----------la~r~~~~LS 173 (257)
T COG1119 105 RKRIGLVSSELHERFRVRETVRDVVLSGFFASIGIYQEDLTAEDLAAAQWLLELLGAKH-----------LADRPFGSLS 173 (257)
T ss_pred HHHhCccCHHHHhhcccccccceeeeecccccccccccCCCHHHHHHHHHHHHHcchhh-----------hccCchhhcC
Confidence 57876432 22355788877643 13455444 34556666544 2245557899
Q ss_pred HHHHHHHHHHHhhccCCCeeeeeCCCCCcCHHHHHHHHHHHHh----cCCCEEEEEccCCCccc-cCCEEEEEeCCeEEE
Q 037346 485 GGQKQRIQIARPLYQDADIFLLDDPFSPVDDHTGAHLFKFCWV----SSSKTVIYATHQVEFLP-AADLILVIKDGKITQ 559 (1156)
Q Consensus 485 gGqkqRi~lAral~~~~~illlDep~s~lD~~~~~~i~~~~~~----~~~~tvi~vtH~~~~~~-~~d~i~~l~~G~i~~ 559 (1156)
-|||||+-|||||+.+|++||||||+++||...++.+.+.+.. ..+.++|+|||+.+.+. ..++++.+++|+++.
T Consensus 174 ~Ge~rrvLiaRALv~~P~LLiLDEP~~GLDl~~re~ll~~l~~~~~~~~~~~ll~VtHh~eEi~~~~th~lll~~g~v~~ 253 (257)
T COG1119 174 QGEQRRVLIARALVKDPELLILDEPAQGLDLIAREQLLNRLEELAASPGAPALLFVTHHAEEIPPCFTHRLLLKEGEVVA 253 (257)
T ss_pred HhHHHHHHHHHHHhcCCCEEEecCccccCChHHHHHHHHHHHHHhcCCCCceEEEEEcchhhcccccceEEEeeCCceee
Confidence 9999999999999999999999999999999999888776543 34679999999999886 589999999999998
Q ss_pred ccC
Q 037346 560 AGK 562 (1156)
Q Consensus 560 ~g~ 562 (1156)
+|.
T Consensus 254 ~g~ 256 (257)
T COG1119 254 QGK 256 (257)
T ss_pred ccc
Confidence 874
|
|
| >PRK11231 fecE iron-dicitrate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=2e-31 Score=295.23 Aligned_cols=192 Identities=22% Similarity=0.375 Sum_probs=170.8
Q ss_pred eEEEEEEEEEEcCCCCceeeCCCCCCHHHHHHHHhhcccCCCceEEEcCeeCCCCChHHHhhcCeeeccccccccc-cch
Q 037346 947 EVNIRHLQVRYAPNLPLVLRGRTGSGKSTLIQTLFRIVESTAGHILIDGKDISLIGLHDLRTRLSIIPQDPTMFEG-TTR 1025 (1156)
Q Consensus 947 ~I~~~~Vsf~Y~~~~~~vL~G~SGsGKSTL~~lL~rl~~p~~G~I~idG~di~~i~~~~LR~~i~~VpQdp~LF~g-TIr 1025 (1156)
...++|++|...+++.++|.|+||||||||+++|+|+++|++|+|.++|.++.+++...+|+.++|+||++.+|.+ |++
T Consensus 15 ~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~ 94 (255)
T PRK11231 15 KRILNDLSLSLPTGKITALIGPNGCGKSTLLKCFARLLTPQSGTVFLGDKPISMLSSRQLARRLALLPQHHLTPEGITVR 94 (255)
T ss_pred EEEEeeeeeEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCCcEEEECCEEhHHCCHHHHhhheEEecccCCCCCCccHH
Confidence 3579999999999998999999999999999999999999999999999999988888889999999999998876 999
Q ss_pred hccCCCC--------C---CCHHHHHHHHHHcCCChHHHhhcCCcccc-------ccccccCCCEEEEecCCcCCCHHHH
Q 037346 1026 SNLDPLE--------E---HADEQIWEALDKCQLGDEVRKKKGKLDSQ-------GRVLLKKSKVLVLDEATASVDTATD 1087 (1156)
Q Consensus 1026 ~Nl~~~~--------~---~~deei~~al~~~~l~~~i~~lp~gl~s~-------ARALLr~~~ILiLDEaTS~LD~~te 1087 (1156)
+|++++. . ..++++.++++.+++.+.....+..|..+ |||++++|++|||||||++||+++.
T Consensus 95 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~ 174 (255)
T PRK11231 95 ELVAYGRSPWLSLWGRLSAEDNARVNQAMEQTRINHLADRRLTDLSGGQRQRAFLAMVLAQDTPVVLLDEPTTYLDINHQ 174 (255)
T ss_pred HHHHhccchhhhhccCCCHHHHHHHHHHHHHcCCHHHHcCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHH
Confidence 9997531 1 11346888999999988877777666655 8999999999999999999999999
Q ss_pred HHHHHHHHHhc-CCceEEEeecCccccc-ccCEEEEEeCcEEeeecChhHHhc
Q 037346 1088 NQIQQTLRQHF-SDCTVVTIAHRITSVL-DSAMVLLLNHGLIKEYDSPTKLLE 1138 (1156)
Q Consensus 1088 ~~I~~~l~~~~-~~~TvI~IaHrl~ti~-~~D~I~Vl~~G~IvE~G~~~eLl~ 1138 (1156)
+.+.+.|+++. +++|+|++||+++.+. .||+|++|++|++++.|+++++..
T Consensus 175 ~~l~~~l~~l~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~ 227 (255)
T PRK11231 175 VELMRLMRELNTQGKTVVTVLHDLNQASRYCDHLVVLANGHVMAQGTPEEVMT 227 (255)
T ss_pred HHHHHHHHHHHHCCCEEEEEECCHHHHHHhcCEEEEEECCeEEEEcCHHHhcC
Confidence 99999998864 4789999999999876 599999999999999999999875
|
|
| >cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.8e-31 Score=286.65 Aligned_cols=182 Identities=21% Similarity=0.321 Sum_probs=161.5
Q ss_pred EEEEEEEEEEcCCCCceeeCCCCCCHHHHHHHHhhcccCCCceEEEcCeeCCCCChHHHhhcCeeeccccccc-cccchh
Q 037346 948 VNIRHLQVRYAPNLPLVLRGRTGSGKSTLIQTLFRIVESTAGHILIDGKDISLIGLHDLRTRLSIIPQDPTMF-EGTTRS 1026 (1156)
Q Consensus 948 I~~~~Vsf~Y~~~~~~vL~G~SGsGKSTL~~lL~rl~~p~~G~I~idG~di~~i~~~~LR~~i~~VpQdp~LF-~gTIr~ 1026 (1156)
-.++|++|...+++.++|.|+||||||||+++|+|+.+|++|+|.++|.++.+. ..+|+++++|||++.+| +.|+++
T Consensus 14 ~~l~~~~~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~--~~~~~~i~~~~q~~~~~~~~tv~e 91 (208)
T cd03268 14 RVLDDISLHVKKGEIYGFLGPNGAGKTTTMKIILGLIKPDSGEITFDGKSYQKN--IEALRRIGALIEAPGFYPNLTARE 91 (208)
T ss_pred EeEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCCcccch--HHHHhhEEEecCCCccCccCcHHH
Confidence 479999999999999999999999999999999999999999999999998765 56788999999999887 579999
Q ss_pred ccCCCC---CCCHHHHHHHHHHcCCChHHHhhcCCcccc-------ccccccCCCEEEEecCCcCCCHHHHHHHHHHHHH
Q 037346 1027 NLDPLE---EHADEQIWEALDKCQLGDEVRKKKGKLDSQ-------GRVLLKKSKVLVLDEATASVDTATDNQIQQTLRQ 1096 (1156)
Q Consensus 1027 Nl~~~~---~~~deei~~al~~~~l~~~i~~lp~gl~s~-------ARALLr~~~ILiLDEaTS~LD~~te~~I~~~l~~ 1096 (1156)
|+.+.. ...++++.++++..++.+.....+..|..+ |||++++|++|||||||++||+.+.+.+.+.|++
T Consensus 92 ~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~ 171 (208)
T cd03268 92 NLRLLARLLGIRKKRIDEVLDVVGLKDSAKKKVKGFSLGMKQRLGIALALLGNPDLLILDEPTNGLDPDGIKELRELILS 171 (208)
T ss_pred HHHHHHHhcCCcHHHHHHHHHHcCCHHHHhhhHhhCCHHHHHHHHHHHHHhcCCCEEEECCCcccCCHHHHHHHHHHHHH
Confidence 996431 234677899999999988887777666655 8999999999999999999999999999999987
Q ss_pred hc-CCceEEEeecCcccccc-cCEEEEEeCcEEeeec
Q 037346 1097 HF-SDCTVVTIAHRITSVLD-SAMVLLLNHGLIKEYD 1131 (1156)
Q Consensus 1097 ~~-~~~TvI~IaHrl~ti~~-~D~I~Vl~~G~IvE~G 1131 (1156)
.. +++|+|++||+++.+.. ||+|++|++|++++.|
T Consensus 172 ~~~~~~tii~~tH~~~~~~~~~d~v~~l~~g~i~~~g 208 (208)
T cd03268 172 LRDQGITVLISSHLLSEIQKVADRIGIINKGKLIEEG 208 (208)
T ss_pred HHHCCCEEEEEcCCHHHHHHhcCEEEEEECCEEEecC
Confidence 65 47899999999998864 9999999999999875
|
Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein. |
| >PRK11607 potG putrescine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.3e-31 Score=307.17 Aligned_cols=194 Identities=22% Similarity=0.367 Sum_probs=167.5
Q ss_pred EEEEEEEEEcCCCCceeeCCCCCCHHHHHHHHhhcccCCCceEEEcCeeCCCCChHHHhhcCeeeccccccccc-cchhc
Q 037346 949 NIRHLQVRYAPNLPLVLRGRTGSGKSTLIQTLFRIVESTAGHILIDGKDISLIGLHDLRTRLSIIPQDPTMFEG-TTRSN 1027 (1156)
Q Consensus 949 ~~~~Vsf~Y~~~~~~vL~G~SGsGKSTL~~lL~rl~~p~~G~I~idG~di~~i~~~~LR~~i~~VpQdp~LF~g-TIr~N 1027 (1156)
.++|++|...+++-++|.|+||||||||+++|.|+.+|++|+|.+||.++.+++. .|+.++||+|++.||.. |++||
T Consensus 34 ~l~~vsl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~i~g~~i~~~~~--~~r~ig~vfQ~~~lfp~ltv~eN 111 (377)
T PRK11607 34 AVDDVSLTIYKGEIFALLGASGCGKSTLLRMLAGFEQPTAGQIMLDGVDLSHVPP--YQRPINMMFQSYALFPHMTVEQN 111 (377)
T ss_pred EEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCCCCH--HHCCEEEEeCCCccCCCCCHHHH
Confidence 4566666666777778889999999999999999999999999999999987764 47789999999999976 99999
Q ss_pred cCCCC---CCC----HHHHHHHHHHcCCChHHHhhcCCcccc-------ccccccCCCEEEEecCCcCCCHHHHHHHHHH
Q 037346 1028 LDPLE---EHA----DEQIWEALDKCQLGDEVRKKKGKLDSQ-------GRVLLKKSKVLVLDEATASVDTATDNQIQQT 1093 (1156)
Q Consensus 1028 l~~~~---~~~----deei~~al~~~~l~~~i~~lp~gl~s~-------ARALLr~~~ILiLDEaTS~LD~~te~~I~~~ 1093 (1156)
+.+.- ..+ .+++.++++..++.++....|..|..+ ||||+++|++|+||||||+||..+...+.+.
T Consensus 112 i~~~l~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~~~~LSgGq~QRVaLARAL~~~P~lLLLDEP~s~LD~~~r~~l~~~ 191 (377)
T PRK11607 112 IAFGLKQDKLPKAEIASRVNEMLGLVHMQEFAKRKPHQLSGGQRQRVALARSLAKRPKLLLLDEPMGALDKKLRDRMQLE 191 (377)
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHH
Confidence 97531 122 356789999999999888888888765 8999999999999999999999999999888
Q ss_pred HHHhc--CCceEEEeecCccccc-ccCEEEEEeCcEEeeecChhHHhcCCCChH
Q 037346 1094 LRQHF--SDCTVVTIAHRITSVL-DSAMVLLLNHGLIKEYDSPTKLLENKSSSF 1144 (1156)
Q Consensus 1094 l~~~~--~~~TvI~IaHrl~ti~-~~D~I~Vl~~G~IvE~G~~~eLl~~~~g~f 1144 (1156)
|++.. .+.|+|+|||+++.+. -||+|+||++|+|++.|+|+++..++...|
T Consensus 192 l~~l~~~~g~tii~vTHd~~ea~~laDri~vl~~G~i~~~g~~~~~~~~p~~~~ 245 (377)
T PRK11607 192 VVDILERVGVTCVMVTHDQEEAMTMAGRIAIMNRGKFVQIGEPEEIYEHPTTRY 245 (377)
T ss_pred HHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEEeCCEEEEEcCHHHHHhCCccHH
Confidence 87654 3789999999999864 599999999999999999999998766554
|
|
| >PRK13537 nodulation ABC transporter NodI; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.6e-31 Score=302.18 Aligned_cols=191 Identities=23% Similarity=0.319 Sum_probs=165.7
Q ss_pred EEEEEEEEEEcCCCCceeeCCCCCCHHHHHHHHhhcccCCCceEEEcCeeCCCCChHHHhhcCeeecccccccc-ccchh
Q 037346 948 VNIRHLQVRYAPNLPLVLRGRTGSGKSTLIQTLFRIVESTAGHILIDGKDISLIGLHDLRTRLSIIPQDPTMFE-GTTRS 1026 (1156)
Q Consensus 948 I~~~~Vsf~Y~~~~~~vL~G~SGsGKSTL~~lL~rl~~p~~G~I~idG~di~~i~~~~LR~~i~~VpQdp~LF~-gTIr~ 1026 (1156)
..++||||+.++++.++|.||||||||||+++|+|+++|++|+|.++|.|+...+ ...|++||||||++.+|. .|++|
T Consensus 21 ~~l~~vsl~i~~Gei~gllGpNGaGKSTLl~~l~Gl~~p~~G~v~i~G~~~~~~~-~~~~~~ig~v~q~~~~~~~~tv~e 99 (306)
T PRK13537 21 LVVDGLSFHVQRGECFGLLGPNGAGKTTTLRMLLGLTHPDAGSISLCGEPVPSRA-RHARQRVGVVPQFDNLDPDFTVRE 99 (306)
T ss_pred EEEecceEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEecccch-HHHHhcEEEEeccCcCCCCCcHHH
Confidence 4678888888888888899999999999999999999999999999999998755 457899999999999886 69999
Q ss_pred ccCCCC---CCC----HHHHHHHHHHcCCChHHHhhcCCcccc-------ccccccCCCEEEEecCCcCCCHHHHHHHHH
Q 037346 1027 NLDPLE---EHA----DEQIWEALDKCQLGDEVRKKKGKLDSQ-------GRVLLKKSKVLVLDEATASVDTATDNQIQQ 1092 (1156)
Q Consensus 1027 Nl~~~~---~~~----deei~~al~~~~l~~~i~~lp~gl~s~-------ARALLr~~~ILiLDEaTS~LD~~te~~I~~ 1092 (1156)
|+.++. ..+ .+.+.++++.+++.+.....+..|..+ ||||+.+|++|||||||++||+.+.+.+.+
T Consensus 100 ~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~aL~~~P~lllLDEPt~gLD~~~~~~l~~ 179 (306)
T PRK13537 100 NLLVFGRYFGLSAAAARALVPPLLEFAKLENKADAKVGELSGGMKRRLTLARALVNDPDVLVLDEPTTGLDPQARHLMWE 179 (306)
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHcCCchHhcCchhhCCHHHHHHHHHHHHHhCCCCEEEEeCCCcCCCHHHHHHHHH
Confidence 997422 112 245678899999987766666666544 899999999999999999999999999999
Q ss_pred HHHHhc-CCceEEEeecCcccccc-cCEEEEEeCcEEeeecChhHHhcC
Q 037346 1093 TLRQHF-SDCTVVTIAHRITSVLD-SAMVLLLNHGLIKEYDSPTKLLEN 1139 (1156)
Q Consensus 1093 ~l~~~~-~~~TvI~IaHrl~ti~~-~D~I~Vl~~G~IvE~G~~~eLl~~ 1139 (1156)
.|+++. +++|||++||+++.+.. ||+|++|++|++++.|+++++.+.
T Consensus 180 ~l~~l~~~g~till~sH~l~e~~~~~d~i~il~~G~i~~~g~~~~l~~~ 228 (306)
T PRK13537 180 RLRSLLARGKTILLTTHFMEEAERLCDRLCVIEEGRKIAEGAPHALIES 228 (306)
T ss_pred HHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEECCHHHHHhc
Confidence 999875 47899999999999865 999999999999999999999754
|
|
| >PRK14263 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=4.2e-31 Score=292.85 Aligned_cols=199 Identities=21% Similarity=0.316 Sum_probs=168.9
Q ss_pred eEEEEEEEEEEcCCCCceeeCCCCCCHHHHHHHHhhcccC-----CCceEEEcCeeCCCC--ChHHHhhcCeeecccccc
Q 037346 947 EVNIRHLQVRYAPNLPLVLRGRTGSGKSTLIQTLFRIVES-----TAGHILIDGKDISLI--GLHDLRTRLSIIPQDPTM 1019 (1156)
Q Consensus 947 ~I~~~~Vsf~Y~~~~~~vL~G~SGsGKSTL~~lL~rl~~p-----~~G~I~idG~di~~i--~~~~LR~~i~~VpQdp~L 1019 (1156)
...++|++|..++++.++|.|+||||||||+++|.|+++| ++|+|.+||.++... ....+|+.++++||++.+
T Consensus 21 ~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~~~ 100 (261)
T PRK14263 21 FMAVRDSHVPIRKNEITGFIGPSGCGKSTVLRSLNRMNDLVKGFRFEGHVHFLGQDVYGKGVDPVVVRRYIGMVFQQPNP 100 (261)
T ss_pred EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcccccccCCCCceEEEECCEeccccccchHhhhhceEEEecCCcc
Confidence 4689999999999999999999999999999999999987 799999999998753 445678899999999999
Q ss_pred ccccchhccCCCCC------CCHHHHHHHHHHcCCChHHHhh----cCCcccc-------ccccccCCCEEEEecCCcCC
Q 037346 1020 FEGTTRSNLDPLEE------HADEQIWEALDKCQLGDEVRKK----KGKLDSQ-------GRVLLKKSKVLVLDEATASV 1082 (1156)
Q Consensus 1020 F~gTIr~Nl~~~~~------~~deei~~al~~~~l~~~i~~l----p~gl~s~-------ARALLr~~~ILiLDEaTS~L 1082 (1156)
|..|+++|+.+... ...+++.++++.+++.+.+... +..|..+ ||||+++|+||||||||++|
T Consensus 101 ~~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPtsgL 180 (261)
T PRK14263 101 FSMSIFDNVAFGLRLNRYKGDLGDRVKHALQGAALWDEVKDKLKVSGLSLSGGQQQRLCIARAIATEPEVLLLDEPCSAL 180 (261)
T ss_pred ccccHHHHHHHHHhhcCchHHHHHHHHHHHHHcCCchhhhhhhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCCccC
Confidence 99999999975321 1235788999999997655322 2233332 89999999999999999999
Q ss_pred CHHHHHHHHHHHHHhcCCceEEEeecCccccc-ccCEEEEEe--------CcEEeeecChhHHhcCCCChHH
Q 037346 1083 DTATDNQIQQTLRQHFSDCTVVTIAHRITSVL-DSAMVLLLN--------HGLIKEYDSPTKLLENKSSSFA 1145 (1156)
Q Consensus 1083 D~~te~~I~~~l~~~~~~~TvI~IaHrl~ti~-~~D~I~Vl~--------~G~IvE~G~~~eLl~~~~g~f~ 1145 (1156)
|+.+...+.+.|++..+++|+|+|||+++.+. .||+|++|+ +|++++.|+++++++++...+.
T Consensus 181 D~~~~~~l~~~l~~~~~~~tii~isH~~~~i~~~~d~v~~l~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~ 252 (261)
T PRK14263 181 DPIATRRVEELMVELKKDYTIALVTHNMQQAIRVADTTAFFSVDISQGTRTGYLVEMGPTAQIFQNPREQLT 252 (261)
T ss_pred CHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHHhCCEEEEEecccccccCCceEEEeCCHHHHHhCCCcHHH
Confidence 99999999999999877889999999999876 499999996 8999999999999875443343
|
|
| >cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.9e-31 Score=287.06 Aligned_cols=178 Identities=25% Similarity=0.372 Sum_probs=158.4
Q ss_pred EEEEEEcCCCCceeeCCCCCCHHHHHHHHhhcccCCCceEEEcCeeCCCCChHHHhhcCeeeccccccccc-cchhccCC
Q 037346 952 HLQVRYAPNLPLVLRGRTGSGKSTLIQTLFRIVESTAGHILIDGKDISLIGLHDLRTRLSIIPQDPTMFEG-TTRSNLDP 1030 (1156)
Q Consensus 952 ~Vsf~Y~~~~~~vL~G~SGsGKSTL~~lL~rl~~p~~G~I~idG~di~~i~~~~LR~~i~~VpQdp~LF~g-TIr~Nl~~ 1030 (1156)
|++|...+++.++|.|+||||||||+++|+|+++|++|+|.+||.++...+. .|+.++++||++.+|.+ |+++|+.+
T Consensus 16 ~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~~~~~~--~~~~i~~~~q~~~~~~~~tv~enl~~ 93 (211)
T cd03298 16 HFDLTFAQGEITAIVGPSGSGKSTLLNLIAGFETPQSGRVLINGVDVTAAPP--ADRPVSMLFQENNLFAHLTVEQNVGL 93 (211)
T ss_pred ceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcCcCCH--hHccEEEEecccccCCCCcHHHHHhc
Confidence 8889988999899999999999999999999999999999999999987654 46789999999999976 99999974
Q ss_pred CCC-------CCHHHHHHHHHHcCCChHHHhhcCCcccc-------ccccccCCCEEEEecCCcCCCHHHHHHHHHHHHH
Q 037346 1031 LEE-------HADEQIWEALDKCQLGDEVRKKKGKLDSQ-------GRVLLKKSKVLVLDEATASVDTATDNQIQQTLRQ 1096 (1156)
Q Consensus 1031 ~~~-------~~deei~~al~~~~l~~~i~~lp~gl~s~-------ARALLr~~~ILiLDEaTS~LD~~te~~I~~~l~~ 1096 (1156)
... ..++++.++++.+++.+.....|..|..+ |||++++|++|||||||++||+++...+.+.|++
T Consensus 94 ~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~ia~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~ 173 (211)
T cd03298 94 GLSPGLKLTAEDRQAIEVALARVGLAGLEKRLPGELSGGERQRVALARVLVRDKPVLLLDEPFAALDPALRAEMLDLVLD 173 (211)
T ss_pred ccccccCccHHHHHHHHHHHHHcCCHHHHhCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHH
Confidence 321 12457899999999998888888877765 8999999999999999999999999999999998
Q ss_pred hc--CCceEEEeecCcccccc-cCEEEEEeCcEEeeec
Q 037346 1097 HF--SDCTVVTIAHRITSVLD-SAMVLLLNHGLIKEYD 1131 (1156)
Q Consensus 1097 ~~--~~~TvI~IaHrl~ti~~-~D~I~Vl~~G~IvE~G 1131 (1156)
.. .++|+|+|||+++.+.. ||+|++|++|++++.|
T Consensus 174 ~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~~ 211 (211)
T cd03298 174 LHAETKMTVLMVTHQPEDAKRLAQRVVFLDNGRIAAQG 211 (211)
T ss_pred HHHhcCCEEEEEecCHHHHHhhhCEEEEEECCEEeecC
Confidence 75 37899999999999865 9999999999999865
|
Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03236 ABC_RNaseL_inhibitor_domain1 The ATPase domain 1 of RNase L inhibitor | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.1e-31 Score=292.65 Aligned_cols=186 Identities=20% Similarity=0.275 Sum_probs=148.1
Q ss_pred eeeEEEeCCCCCCCccccceEEeeCCeEEEEEcCCCCChHHHHHHHhCCCCCCCcEEE-----------EcCe-------
Q 037346 361 IDGSFSWDFSSPNPTLRNINLKVFHGMRVAVCGTVGSGKSSCLSCILGGVPKESGIIR-----------LCGT------- 422 (1156)
Q Consensus 361 ~~~~f~~~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKSTll~~i~g~~~~~~G~i~-----------~~g~------- 422 (1156)
.+++++|+. ...+|+|+|+ +++||+++|+||||||||||+++|+|+++|++|+|. ++|.
T Consensus 4 ~~~~~~y~~--~~~~l~~i~~-i~~Ge~~~IvG~nGsGKSTLlk~l~Gl~~p~~G~I~~~~~~~~~~~~~~g~~~~~~~~ 80 (255)
T cd03236 4 DEPVHRYGP--NSFKLHRLPV-PREGQVLGLVGPNGIGKSTALKILAGKLKPNLGKFDDPPDWDEILDEFRGSELQNYFT 80 (255)
T ss_pred cCcceeecC--cchhhhcCCC-CCCCCEEEEECCCCCCHHHHHHHHhCCcCCCCceEeeccccchhhhhccCchhhhhhH
Confidence 368899962 3369999995 999999999999999999999999999999999995 5552
Q ss_pred --------EEEEecCCcCCCccHHHHhhcCCC--CCHHHHHHHHHHhCCchhhhhCCCCCccccccCCCCCCHHHHHHHH
Q 037346 423 --------KAYVAQSPWIQSGKIEENILFGKE--MDRERYERVLEACSLKKDLEVLPFGDQTIIGERGINLSGGQKQRIQ 492 (1156)
Q Consensus 423 --------~~~v~Q~~~~~~~ti~eni~~~~~--~~~~~~~~~~~~~~l~~~~~~~~~g~~t~v~~~g~~LSgGqkqRi~ 492 (1156)
++|++|++..+..++.+|+.+... ..+++..++++.+++.+.. ...+.+||||||||++
T Consensus 81 ~~~~~~~~i~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~l~~~gl~~~~-----------~~~~~~LS~G~~qrv~ 149 (255)
T cd03236 81 KLLEGDVKVIVKPQYVDLIPKAVKGKVGELLKKKDERGKLDELVDQLELRHVL-----------DRNIDQLSGGELQRVA 149 (255)
T ss_pred HhhhcccceeeecchhccCchHHHHHHHHHhchhHHHHHHHHHHHHcCCchhh-----------cCChhhCCHHHHHHHH
Confidence 478888877665566666554311 1235566777777765433 3456789999999999
Q ss_pred HHHhhccCCCeeeeeCCCCCcCHHHHHHHHHHHHh--cCCCEEEEEccCCCccc-cCCEEEEEeCCeEEEcc
Q 037346 493 IARPLYQDADIFLLDDPFSPVDDHTGAHLFKFCWV--SSSKTVIYATHQVEFLP-AADLILVIKDGKITQAG 561 (1156)
Q Consensus 493 lAral~~~~~illlDep~s~lD~~~~~~i~~~~~~--~~~~tvi~vtH~~~~~~-~~d~i~~l~~G~i~~~g 561 (1156)
||||++.+|+++||||||++||+.+.+.+.+.+.. .+++|+|++||+++.+. .||+|++|+ |++.+.|
T Consensus 150 laral~~~p~illlDEPts~LD~~~~~~l~~~l~~l~~~~~tIIiiSHd~~~~~~~ad~i~~l~-~~~~~~~ 220 (255)
T cd03236 150 IAAALARDADFYFFDEPSSYLDIKQRLNAARLIRELAEDDNYVLVVEHDLAVLDYLSDYIHCLY-GEPGAYG 220 (255)
T ss_pred HHHHHHhCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEEEC-CCCCcce
Confidence 99999999999999999999999999888766543 35799999999999987 599999995 5555433
|
The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI s are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLIs have an N-terminal Fe-S domain and two nucleotide binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology. |
| >PRK13651 cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=2e-31 Score=300.65 Aligned_cols=192 Identities=19% Similarity=0.256 Sum_probs=166.5
Q ss_pred EEEEEEEEEEcCCCCceeeCCCCCCHHHHHHHHhhcccCCCceEEEcCeeCCC------------------------CCh
Q 037346 948 VNIRHLQVRYAPNLPLVLRGRTGSGKSTLIQTLFRIVESTAGHILIDGKDISL------------------------IGL 1003 (1156)
Q Consensus 948 I~~~~Vsf~Y~~~~~~vL~G~SGsGKSTL~~lL~rl~~p~~G~I~idG~di~~------------------------i~~ 1003 (1156)
..|+||+|...+++.++|.|+||||||||+++|.|+++|++|+|++||.++.. .+.
T Consensus 21 ~~l~~vsl~i~~Ge~v~iiG~nGsGKSTLl~~L~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 100 (305)
T PRK13651 21 KALDNVSVEINQGEFIAIIGQTGSGKTTFIEHLNALLLPDTGTIEWIFKDEKNKKKTKEKEKVLEKLVIQKTRFKKIKKI 100 (305)
T ss_pred cceeeeEEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEEeceecccccccccccccccccccccccccccchH
Confidence 57999999999999999999999999999999999999999999999987632 134
Q ss_pred HHHhhcCeeecccc--ccccccchhccCCCC---CCC----HHHHHHHHHHcCCC-hHHHhhcCCcccc-------cccc
Q 037346 1004 HDLRTRLSIIPQDP--TMFEGTTRSNLDPLE---EHA----DEQIWEALDKCQLG-DEVRKKKGKLDSQ-------GRVL 1066 (1156)
Q Consensus 1004 ~~LR~~i~~VpQdp--~LF~gTIr~Nl~~~~---~~~----deei~~al~~~~l~-~~i~~lp~gl~s~-------ARAL 1066 (1156)
..+|++++||||+| .+|..|+++||.++. ..+ ++++.++++.+||. ++....|..|..+ ||||
T Consensus 101 ~~~~~~ig~v~Q~~~~~l~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~LSgGqkqrvalA~aL 180 (305)
T PRK13651 101 KEIRRRVGVVFQFAEYQLFEQTIEKDIIFGPVSMGVSKEEAKKRAAKYIELVGLDESYLQRSPFELSGGQKRRVALAGIL 180 (305)
T ss_pred HHHHhceEEEeeCcccccccccHHHHHHhhHHHcCCCHHHHHHHHHHHHHHcCCChhhhhCChhhCCHHHHHHHHHHHHH
Confidence 67889999999986 688899999997532 122 34578999999996 6777777766654 8999
Q ss_pred ccCCCEEEEecCCcCCCHHHHHHHHHHHHHhc-CCceEEEeecCcccc-cccCEEEEEeCcEEeeecChhHHhcC
Q 037346 1067 LKKSKVLVLDEATASVDTATDNQIQQTLRQHF-SDCTVVTIAHRITSV-LDSAMVLLLNHGLIKEYDSPTKLLEN 1139 (1156)
Q Consensus 1067 Lr~~~ILiLDEaTS~LD~~te~~I~~~l~~~~-~~~TvI~IaHrl~ti-~~~D~I~Vl~~G~IvE~G~~~eLl~~ 1139 (1156)
+.+|+||||||||++||+.+.+.+.+.|+++. .++|||+|||+++.+ ..||||+||++|+|++.|+++++.++
T Consensus 181 ~~~P~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~g~tiiivtHd~~~~~~~adrv~vl~~G~i~~~g~~~~~~~~ 255 (305)
T PRK13651 181 AMEPDFLVFDEPTAGLDPQGVKEILEIFDNLNKQGKTIILVTHDLDNVLEWTKRTIFFKDGKIIKDGDTYDILSD 255 (305)
T ss_pred HhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeeCHHHHHHhCCEEEEEECCEEEEECCHHHHhcC
Confidence 99999999999999999999999999998764 478999999999876 56999999999999999999998864
|
|
| >cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE) | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.3e-31 Score=289.87 Aligned_cols=181 Identities=24% Similarity=0.353 Sum_probs=159.5
Q ss_pred eEEEEEEEEEEcCCCCceeeCCCCCCHHHHHHHHhhcccCCCceEEEcCeeCCCCChHH----HhhcCeeeccccccccc
Q 037346 947 EVNIRHLQVRYAPNLPLVLRGRTGSGKSTLIQTLFRIVESTAGHILIDGKDISLIGLHD----LRTRLSIIPQDPTMFEG 1022 (1156)
Q Consensus 947 ~I~~~~Vsf~Y~~~~~~vL~G~SGsGKSTL~~lL~rl~~p~~G~I~idG~di~~i~~~~----LR~~i~~VpQdp~LF~g 1022 (1156)
...++|++|...+++.++|.|+||||||||+++|+|+++|++|+|.+||.++.+.+... .|++++|+||++.+|.+
T Consensus 17 ~~il~~~s~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~ 96 (218)
T cd03255 17 VQALKGVSLSIEKGEFVAIVGPSGSGKSTLLNILGGLDRPTSGEVRVDGTDISKLSEKELAAFRRRHIGFVFQSFNLLPD 96 (218)
T ss_pred eeEEeeeEEEEcCCCEEEEEcCCCCCHHHHHHHHhCCcCCCceeEEECCEehhhcchhHHHHHHhhcEEEEeeccccCCC
Confidence 35799999999999999999999999999999999999999999999999998877433 46789999999999986
Q ss_pred -cchhccCCCC---CC----CHHHHHHHHHHcCCChHHHhhcCCcccc-------ccccccCCCEEEEecCCcCCCHHHH
Q 037346 1023 -TTRSNLDPLE---EH----ADEQIWEALDKCQLGDEVRKKKGKLDSQ-------GRVLLKKSKVLVLDEATASVDTATD 1087 (1156)
Q Consensus 1023 -TIr~Nl~~~~---~~----~deei~~al~~~~l~~~i~~lp~gl~s~-------ARALLr~~~ILiLDEaTS~LD~~te 1087 (1156)
|+++|+.+.. .. .++++.++++..++.+.....|..|..+ ||||+++|+||||||||++||+++.
T Consensus 97 ~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~lllLDEP~~~LD~~~~ 176 (218)
T cd03255 97 LTALENVELPLLLAGVPKKERRERAEELLERVGLGDRLNHYPSELSGGQQQRVAIARALANDPKIILADEPTGNLDSETG 176 (218)
T ss_pred CcHHHHHHHHHhhcCCCHHHHHHHHHHHHHHcCCchhhhcChhhcCHHHHHHHHHHHHHccCCCEEEEcCCcccCCHHHH
Confidence 9999997521 11 1356889999999988877777777655 8999999999999999999999999
Q ss_pred HHHHHHHHHhcC--CceEEEeecCcccccccCEEEEEeCcEE
Q 037346 1088 NQIQQTLRQHFS--DCTVVTIAHRITSVLDSAMVLLLNHGLI 1127 (1156)
Q Consensus 1088 ~~I~~~l~~~~~--~~TvI~IaHrl~ti~~~D~I~Vl~~G~I 1127 (1156)
+.+.+.|++..+ ++|||+|||+++.+..||+|++|++|++
T Consensus 177 ~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~d~v~~l~~G~i 218 (218)
T cd03255 177 KEVMELLRELNKEAGTTIVVVTHDPELAEYADRIIELRDGKI 218 (218)
T ss_pred HHHHHHHHHHHHhcCCeEEEEECCHHHHhhhcEEEEeeCCcC
Confidence 999999998754 7899999999998889999999999975
|
They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane. |
| >TIGR00968 3a0106s01 sulfate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.2e-31 Score=290.21 Aligned_cols=190 Identities=22% Similarity=0.376 Sum_probs=168.0
Q ss_pred EEEEEEEEEEcCCCCceeeCCCCCCHHHHHHHHhhcccCCCceEEEcCeeCCCCChHHHhhcCeeeccccccccc-cchh
Q 037346 948 VNIRHLQVRYAPNLPLVLRGRTGSGKSTLIQTLFRIVESTAGHILIDGKDISLIGLHDLRTRLSIIPQDPTMFEG-TTRS 1026 (1156)
Q Consensus 948 I~~~~Vsf~Y~~~~~~vL~G~SGsGKSTL~~lL~rl~~p~~G~I~idG~di~~i~~~~LR~~i~~VpQdp~LF~g-TIr~ 1026 (1156)
-.++|++|...+++.++|.|+||||||||+++|+|+++|++|+|.+||.++...+. .|+.++|+||+|.+|.+ |+++
T Consensus 14 ~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~i~g~~~~~~~~--~~~~i~~~~q~~~~~~~~t~~e 91 (237)
T TIGR00968 14 QALDDVNLEVPTGSLVALLGPSGSGKSTLLRIIAGLEQPDSGRIRLNGQDATRVHA--RDRKIGFVFQHYALFKHLTVRD 91 (237)
T ss_pred eeeeeEEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcCcCCh--hhcCEEEEecChhhccCCcHHH
Confidence 37999999999999999999999999999999999999999999999999987653 47889999999999976 9999
Q ss_pred ccCCCC---CC----CHHHHHHHHHHcCCChHHHhhcCCcccc-------ccccccCCCEEEEecCCcCCCHHHHHHHHH
Q 037346 1027 NLDPLE---EH----ADEQIWEALDKCQLGDEVRKKKGKLDSQ-------GRVLLKKSKVLVLDEATASVDTATDNQIQQ 1092 (1156)
Q Consensus 1027 Nl~~~~---~~----~deei~~al~~~~l~~~i~~lp~gl~s~-------ARALLr~~~ILiLDEaTS~LD~~te~~I~~ 1092 (1156)
|+.+.. .. .++++.++++..++.+...+.+..+..+ ||||+++|+++||||||++||.++.+.+.+
T Consensus 92 nl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~lS~G~~qrl~laral~~~p~llllDEP~~~LD~~~~~~~~~ 171 (237)
T TIGR00968 92 NIAFGLEIRKHPKAKIKARVEELLELVQLEGLGDRYPNQLSGGQRQRVALARALAVEPQVLLLDEPFGALDAKVRKELRS 171 (237)
T ss_pred HHHhHHHhcCCCHHHHHHHHHHHHHHcCCHhHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHH
Confidence 996432 11 1356789999999988887777666655 899999999999999999999999999999
Q ss_pred HHHHhcC--CceEEEeecCcccccc-cCEEEEEeCcEEeeecChhHHhcC
Q 037346 1093 TLRQHFS--DCTVVTIAHRITSVLD-SAMVLLLNHGLIKEYDSPTKLLEN 1139 (1156)
Q Consensus 1093 ~l~~~~~--~~TvI~IaHrl~ti~~-~D~I~Vl~~G~IvE~G~~~eLl~~ 1139 (1156)
.|++..+ ++|+|++||+++.+.. ||+|++|++|++++.|+++++++.
T Consensus 172 ~l~~~~~~~~~tvli~sH~~~~~~~~~d~i~~l~~g~i~~~~~~~~~~~~ 221 (237)
T TIGR00968 172 WLRKLHDEVHVTTVFVTHDQEEAMEVADRIVVMSNGKIEQIGSPDEVYDH 221 (237)
T ss_pred HHHHHHHhcCCEEEEEeCCHHHHHhhcCEEEEEECCEEEEecCHHHHHcC
Confidence 9998654 6899999999998765 999999999999999999999853
|
|
| >PRK14235 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=5.3e-31 Score=293.41 Aligned_cols=194 Identities=22% Similarity=0.359 Sum_probs=162.3
Q ss_pred EEEEEEEEEcCCCCceeeCCCCCCHHHHHHHHhhcccC-----CCceEEEcCeeCCC--CChHHHhhcCeeecccccccc
Q 037346 949 NIRHLQVRYAPNLPLVLRGRTGSGKSTLIQTLFRIVES-----TAGHILIDGKDISL--IGLHDLRTRLSIIPQDPTMFE 1021 (1156)
Q Consensus 949 ~~~~Vsf~Y~~~~~~vL~G~SGsGKSTL~~lL~rl~~p-----~~G~I~idG~di~~--i~~~~LR~~i~~VpQdp~LF~ 1021 (1156)
.|+|++|+..+++.++|.|+||||||||+++|.|+++| ++|+|.+||.++.. .+...+|+.+++|||+|.+|.
T Consensus 34 il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~I~~~g~~i~~~~~~~~~~~~~i~~v~q~~~~~~ 113 (267)
T PRK14235 34 ALFDVDLDIPEKTVTAFIGPSGCGKSTFLRCLNRMNDTIDGCRVTGKITLDGEDIYDPRLDVVELRARVGMVFQKPNPFP 113 (267)
T ss_pred EEEEEEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCceEEEECCEECcccccchHHHhhceEEEecCCCCCC
Confidence 45666666667777788899999999999999999975 89999999999975 356678899999999999999
Q ss_pred ccchhccCCCC---C-----C-CHHHHHHHHHHcCCChHH----HhhcCCcccc-------ccccccCCCEEEEecCCcC
Q 037346 1022 GTTRSNLDPLE---E-----H-ADEQIWEALDKCQLGDEV----RKKKGKLDSQ-------GRVLLKKSKVLVLDEATAS 1081 (1156)
Q Consensus 1022 gTIr~Nl~~~~---~-----~-~deei~~al~~~~l~~~i----~~lp~gl~s~-------ARALLr~~~ILiLDEaTS~ 1081 (1156)
+|+++|+.+.. . . .++++.++++.+++.+.+ ...+..|..+ ||||+.+|++|||||||++
T Consensus 114 ~tv~enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgGq~qrv~laral~~~p~lllLDEPt~~ 193 (267)
T PRK14235 114 KSIYENVAYGPRIHGLARSKAELDEIVETSLRKAGLWEEVKDRLHEPGTGLSGGQQQRLCIARAIAVSPEVILMDEPCSA 193 (267)
T ss_pred CcHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCchhhhHHhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCCcC
Confidence 99999996421 1 1 135578999999997543 2334445433 8999999999999999999
Q ss_pred CCHHHHHHHHHHHHHhcCCceEEEeecCccccc-ccCEEEEEeCcEEeeecChhHHhcCCCC
Q 037346 1082 VDTATDNQIQQTLRQHFSDCTVVTIAHRITSVL-DSAMVLLLNHGLIKEYDSPTKLLENKSS 1142 (1156)
Q Consensus 1082 LD~~te~~I~~~l~~~~~~~TvI~IaHrl~ti~-~~D~I~Vl~~G~IvE~G~~~eLl~~~~g 1142 (1156)
||+.+...+.+.|++..+++|+|+|||+++.+. -||+|++|++|+|++.|++++++.++..
T Consensus 194 LD~~~~~~l~~~L~~l~~~~tiiivtH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~~~~ 255 (267)
T PRK14235 194 LDPIATAKVEELIDELRQNYTIVIVTHSMQQAARVSQRTAFFHLGNLVEVGDTEKMFTNPDD 255 (267)
T ss_pred CCHHHHHHHHHHHHHHhcCCeEEEEEcCHHHHHhhCCEEEEEECCEEEEeCCHHHHHhCCCC
Confidence 999999999999998877789999999999985 4899999999999999999999865433
|
|
| >cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids | Back alignment and domain information |
|---|
Probab=99.97 E-value=2e-31 Score=291.41 Aligned_cols=192 Identities=22% Similarity=0.370 Sum_probs=166.7
Q ss_pred eEEEEEEEEEEcCCCCceeeCCCCCCHHHHHHHHhhcccCCCceEEEcCeeCCCCChHHH-hhcCeeeccccccccc-cc
Q 037346 947 EVNIRHLQVRYAPNLPLVLRGRTGSGKSTLIQTLFRIVESTAGHILIDGKDISLIGLHDL-RTRLSIIPQDPTMFEG-TT 1024 (1156)
Q Consensus 947 ~I~~~~Vsf~Y~~~~~~vL~G~SGsGKSTL~~lL~rl~~p~~G~I~idG~di~~i~~~~L-R~~i~~VpQdp~LF~g-TI 1024 (1156)
...++|++|...+++.++|.|+||||||||+++|+|+++|++|+|.++|.++...+...+ |+.++++||++.+|.+ |+
T Consensus 13 ~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv 92 (232)
T cd03218 13 RKVVNGVSLSVKQGEIVGLLGPNGAGKTTTFYMIVGLVKPDSGKILLDGQDITKLPMHKRARLGIGYLPQEASIFRKLTV 92 (232)
T ss_pred EEeeccceeEecCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEecccCCHhHHHhccEEEecCCccccccCcH
Confidence 347899999999999999999999999999999999999999999999999988876654 5679999999999987 99
Q ss_pred hhccCCCC---CCC----HHHHHHHHHHcCCChHHHhhcCCcccc-------ccccccCCCEEEEecCCcCCCHHHHHHH
Q 037346 1025 RSNLDPLE---EHA----DEQIWEALDKCQLGDEVRKKKGKLDSQ-------GRVLLKKSKVLVLDEATASVDTATDNQI 1090 (1156)
Q Consensus 1025 r~Nl~~~~---~~~----deei~~al~~~~l~~~i~~lp~gl~s~-------ARALLr~~~ILiLDEaTS~LD~~te~~I 1090 (1156)
++|+.+.. ... ++++.++++..++.+.....+..|..+ ||||+.+|++|||||||++||+++.+.+
T Consensus 93 ~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~~ 172 (232)
T cd03218 93 EENILAVLEIRGLSKKEREEKLEELLEEFHITHLRKSKASSLSGGERRRVEIARALATNPKFLLLDEPFAGVDPIAVQDI 172 (232)
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEecCCcccCCHHHHHHH
Confidence 99996421 111 245678899999987776666666544 8999999999999999999999999999
Q ss_pred HHHHHHhc-CCceEEEeecCccccc-ccCEEEEEeCcEEeeecChhHHhc
Q 037346 1091 QQTLRQHF-SDCTVVTIAHRITSVL-DSAMVLLLNHGLIKEYDSPTKLLE 1138 (1156)
Q Consensus 1091 ~~~l~~~~-~~~TvI~IaHrl~ti~-~~D~I~Vl~~G~IvE~G~~~eLl~ 1138 (1156)
.+.|++.. +++|+|++||+++.+. .||+|++|++|++++.|+++++..
T Consensus 173 ~~~l~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~ 222 (232)
T cd03218 173 QKIIKILKDRGIGVLITDHNVRETLSITDRAYIIYEGKVLAEGTPEEIAA 222 (232)
T ss_pred HHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCeEEEEeCHHHhhc
Confidence 99998765 4789999999997665 599999999999999999999874
|
The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium. |
| >cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.1e-31 Score=290.45 Aligned_cols=183 Identities=22% Similarity=0.348 Sum_probs=160.9
Q ss_pred EEEEEEEEEEcCCCCceeeCCCCCCHHHHHHHHhhcccCCCceEEEcCeeCCCCChHHHhhcCeeeccccccccc-cchh
Q 037346 948 VNIRHLQVRYAPNLPLVLRGRTGSGKSTLIQTLFRIVESTAGHILIDGKDISLIGLHDLRTRLSIIPQDPTMFEG-TTRS 1026 (1156)
Q Consensus 948 I~~~~Vsf~Y~~~~~~vL~G~SGsGKSTL~~lL~rl~~p~~G~I~idG~di~~i~~~~LR~~i~~VpQdp~LF~g-TIr~ 1026 (1156)
..++|++|...+++.++|.|+||||||||+++|+|+++|++|+|.+||.++.. ....+|++++++||+|.+|.+ |+++
T Consensus 19 ~il~~~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~-~~~~~~~~i~~~~q~~~~~~~~tv~e 97 (218)
T cd03266 19 QAVDGVSFTVKPGEVTGLLGPNGAGKTTTLRMLAGLLEPDAGFATVDGFDVVK-EPAEARRRLGFVSDSTGLYDRLTARE 97 (218)
T ss_pred eeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCCceEEECCEEccc-CHHHHHhhEEEecCCcccCcCCCHHH
Confidence 47999999999999999999999999999999999999999999999999976 456778999999999999985 9999
Q ss_pred ccCCCC---CC----CHHHHHHHHHHcCCChHHHhhcCCcccc-------ccccccCCCEEEEecCCcCCCHHHHHHHHH
Q 037346 1027 NLDPLE---EH----ADEQIWEALDKCQLGDEVRKKKGKLDSQ-------GRVLLKKSKVLVLDEATASVDTATDNQIQQ 1092 (1156)
Q Consensus 1027 Nl~~~~---~~----~deei~~al~~~~l~~~i~~lp~gl~s~-------ARALLr~~~ILiLDEaTS~LD~~te~~I~~ 1092 (1156)
|+.+.. .. .++++.++++..++.+.....+..|..+ |||++++|++|||||||++||+.+.+.+.+
T Consensus 98 ~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~illlDEPt~~LD~~~~~~l~~ 177 (218)
T cd03266 98 NLEYFAGLYGLKGDELTARLEELADRLGMEELLDRRVGGFSTGMRQKVAIARALVHDPPVLLLDEPTTGLDVMATRALRE 177 (218)
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHHhhhhhhcCHHHHHHHHHHHHHhcCCCEEEEcCCCcCCCHHHHHHHHH
Confidence 985321 11 2356888999999988877777666654 899999999999999999999999999999
Q ss_pred HHHHhc-CCceEEEeecCcccccc-cCEEEEEeCcEEeeec
Q 037346 1093 TLRQHF-SDCTVVTIAHRITSVLD-SAMVLLLNHGLIKEYD 1131 (1156)
Q Consensus 1093 ~l~~~~-~~~TvI~IaHrl~ti~~-~D~I~Vl~~G~IvE~G 1131 (1156)
.|+++. +++|+|+|||+++.+.. ||+|++|++|++++.|
T Consensus 178 ~l~~~~~~~~tii~~tH~~~~~~~~~d~i~~l~~G~i~~~~ 218 (218)
T cd03266 178 FIRQLRALGKCILFSTHIMQEVERLCDRVVVLHRGRVVYEG 218 (218)
T ss_pred HHHHHHHCCCEEEEEeCCHHHHHHhcCEEEEEECCEEeecC
Confidence 998874 47899999999998764 9999999999999865
|
NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein. |
| >PRK13634 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.2e-31 Score=299.56 Aligned_cols=192 Identities=23% Similarity=0.347 Sum_probs=165.7
Q ss_pred EEEEEEEEEEcCCCCceeeCCCCCCHHHHHHHHhhcccCCCceEEEcCeeCCC----CChHHHhhcCeeecccc--cccc
Q 037346 948 VNIRHLQVRYAPNLPLVLRGRTGSGKSTLIQTLFRIVESTAGHILIDGKDISL----IGLHDLRTRLSIIPQDP--TMFE 1021 (1156)
Q Consensus 948 I~~~~Vsf~Y~~~~~~vL~G~SGsGKSTL~~lL~rl~~p~~G~I~idG~di~~----i~~~~LR~~i~~VpQdp--~LF~ 1021 (1156)
..++||+|...+++.++|.|+||||||||+++|.|+++|++|+|.+||+++.. .+....|++++||||+| .+|+
T Consensus 21 ~~L~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~~~ig~v~q~~~~~l~~ 100 (290)
T PRK13634 21 RALYDVNVSIPSGSYVAIIGHTGSGKSTLLQHLNGLLQPTSGTVTIGERVITAGKKNKKLKPLRKKVGIVFQFPEHQLFE 100 (290)
T ss_pred cceeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEECccccccchHHHHHhhEEEEeeCchhhhhh
Confidence 47899999999999999999999999999999999999999999999999863 34667888999999998 6888
Q ss_pred ccchhccCCCC---CCC----HHHHHHHHHHcCCC-hHHHhhcCCcccc-------ccccccCCCEEEEecCCcCCCHHH
Q 037346 1022 GTTRSNLDPLE---EHA----DEQIWEALDKCQLG-DEVRKKKGKLDSQ-------GRVLLKKSKVLVLDEATASVDTAT 1086 (1156)
Q Consensus 1022 gTIr~Nl~~~~---~~~----deei~~al~~~~l~-~~i~~lp~gl~s~-------ARALLr~~~ILiLDEaTS~LD~~t 1086 (1156)
.|+++|+.+.. ..+ .+.+.++++.++|. +.....|..|..+ ||||+.+|+||||||||++||+.+
T Consensus 101 ~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~LSgGq~qrv~lAraL~~~P~llllDEPt~~LD~~~ 180 (290)
T PRK13634 101 ETVEKDICFGPMNFGVSEEDAKQKAREMIELVGLPEELLARSPFELSGGQMRRVAIAGVLAMEPEVLVLDEPTAGLDPKG 180 (290)
T ss_pred hhHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCChhhhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHH
Confidence 99999996431 122 23577899999997 4445556666544 899999999999999999999999
Q ss_pred HHHHHHHHHHhcC--CceEEEeecCccccc-ccCEEEEEeCcEEeeecChhHHhcC
Q 037346 1087 DNQIQQTLRQHFS--DCTVVTIAHRITSVL-DSAMVLLLNHGLIKEYDSPTKLLEN 1139 (1156)
Q Consensus 1087 e~~I~~~l~~~~~--~~TvI~IaHrl~ti~-~~D~I~Vl~~G~IvE~G~~~eLl~~ 1139 (1156)
...+.+.|+++.+ +.|||+|||+++.+. .||||++|++|+|++.|+++++.++
T Consensus 181 ~~~l~~~L~~l~~~~g~tviiitHd~~~~~~~~drv~~l~~G~i~~~g~~~~~~~~ 236 (290)
T PRK13634 181 RKEMMEMFYKLHKEKGLTTVLVTHSMEDAARYADQIVVMHKGTVFLQGTPREIFAD 236 (290)
T ss_pred HHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHHhcC
Confidence 9999999988753 789999999999875 5999999999999999999998754
|
|
| >PRK14259 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=5.4e-31 Score=293.53 Aligned_cols=193 Identities=23% Similarity=0.399 Sum_probs=160.3
Q ss_pred EEEEEEEEEcCCCCceeeCCCCCCHHHHHHHHhhccc-----CCCceEEEcCeeCCC--CChHHHhhcCeeecccccccc
Q 037346 949 NIRHLQVRYAPNLPLVLRGRTGSGKSTLIQTLFRIVE-----STAGHILIDGKDISL--IGLHDLRTRLSIIPQDPTMFE 1021 (1156)
Q Consensus 949 ~~~~Vsf~Y~~~~~~vL~G~SGsGKSTL~~lL~rl~~-----p~~G~I~idG~di~~--i~~~~LR~~i~~VpQdp~LF~ 1021 (1156)
.++|++|...+++.++|.|+||||||||+++|+|+++ |++|+|.+||.++.. .+...+|++++||||++.+|.
T Consensus 28 il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~p~~G~v~~~g~~i~~~~~~~~~~~~~i~~v~q~~~l~~ 107 (269)
T PRK14259 28 AVKNVFCDIPRGKVTALIGPSGCGKSTVLRSLNRMNDLIEGCSLKGRVLFDGTDLYDPRVDPVEVRRRIGMVFQQPNPFP 107 (269)
T ss_pred EEcceEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEcccccCCHHHHhhceEEEccCCccch
Confidence 4555666656777778889999999999999999987 689999999999863 566788999999999999999
Q ss_pred ccchhccCCCCC---C---CHHHHHHHHHHcCCChH----HHhhcCCcccc-------ccccccCCCEEEEecCCcCCCH
Q 037346 1022 GTTRSNLDPLEE---H---ADEQIWEALDKCQLGDE----VRKKKGKLDSQ-------GRVLLKKSKVLVLDEATASVDT 1084 (1156)
Q Consensus 1022 gTIr~Nl~~~~~---~---~deei~~al~~~~l~~~----i~~lp~gl~s~-------ARALLr~~~ILiLDEaTS~LD~ 1084 (1156)
.|+++|+.+... . .++++.++++.+++.+. ....+..|..+ ||||+++|++|||||||++||+
T Consensus 108 ~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~lllLDEPt~gLD~ 187 (269)
T PRK14259 108 KSIYENIAFGARINGYTGDMDELVERSLRKAAVWDECKDKLNESGYSLSGGQQQRLCIARTIAIEPEVILMDEPCSALDP 187 (269)
T ss_pred hhHHHHHhhhhhhcCCcHHHHHHHHHHHHHhCCcchhhhhhCCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCH
Confidence 999999975321 1 14567888999987543 33333444433 8999999999999999999999
Q ss_pred HHHHHHHHHHHHhcCCceEEEeecCccccc-ccCEEEEEeC-----------cEEeeecChhHHhcCCC
Q 037346 1085 ATDNQIQQTLRQHFSDCTVVTIAHRITSVL-DSAMVLLLNH-----------GLIKEYDSPTKLLENKS 1141 (1156)
Q Consensus 1085 ~te~~I~~~l~~~~~~~TvI~IaHrl~ti~-~~D~I~Vl~~-----------G~IvE~G~~~eLl~~~~ 1141 (1156)
.+...+.+.|++..+++|+|+|||+++.+. -||+|++|++ |+++|.|++++++.++.
T Consensus 188 ~~~~~l~~~l~~~~~~~tiiivtH~~~~~~~~~d~i~~l~~~~~~~~~~g~~g~~~~~~~~~~~~~~~~ 256 (269)
T PRK14259 188 ISTLKIEETMHELKKNFTIVIVTHNMQQAVRVSDMTAFFNAEEVEGGSGGKVGYLVEFNETKKIFNSPK 256 (269)
T ss_pred HHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEeccccccccccccceEEEeCCHHHHHhCcC
Confidence 999999999998877889999999998875 5999999996 67999999999987544
|
|
| >TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein | Back alignment and domain information |
|---|
Probab=99.97 E-value=4.5e-31 Score=349.82 Aligned_cols=202 Identities=20% Similarity=0.340 Sum_probs=170.9
Q ss_pred cEEEeeeEEEeCCC-CCCCccccceEEeeCCeEEEEEcCCCCChHHHHHHHhCCCC---CCCcEEEEcCe---------E
Q 037346 357 AIEIIDGSFSWDFS-SPNPTLRNINLKVFHGMRVAVCGTVGSGKSSCLSCILGGVP---KESGIIRLCGT---------K 423 (1156)
Q Consensus 357 ~i~~~~~~f~~~~~-~~~~~l~~i~l~i~~g~~~~ivG~~GsGKSTll~~i~g~~~---~~~G~i~~~g~---------~ 423 (1156)
.++++|+++.|+.. .++.+|+|+|+++++||+++|+||||||||||+++|+|..+ |++|+|.+||+ +
T Consensus 759 ~l~~~nl~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~G~sGaGKSTLL~~Lag~~~~g~~~~G~I~i~G~~~~~~~~~~i 838 (1394)
T TIGR00956 759 IFHWRNLTYEVKIKKEKRVILNNVDGWVKPGTLTALMGASGAGKTTLLNVLAERVTTGVITGGDRLVNGRPLDSSFQRSI 838 (1394)
T ss_pred eEEEEeeEEEecCCCCCcEeeeCCEEEEECCEEEEEECCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEECChhhhcce
Confidence 47899999999632 24579999999999999999999999999999999999997 68899999984 5
Q ss_pred EEEecCCc-CCCccHHHHhhcCC------CCCH----HHHHHHHHHhCCchhhhhCCCCCccccccCCCCCCHHHHHHHH
Q 037346 424 AYVAQSPW-IQSGKIEENILFGK------EMDR----ERYERVLEACSLKKDLEVLPFGDQTIIGERGINLSGGQKQRIQ 492 (1156)
Q Consensus 424 ~~v~Q~~~-~~~~ti~eni~~~~------~~~~----~~~~~~~~~~~l~~~~~~~~~g~~t~v~~~g~~LSgGqkqRi~ 492 (1156)
+||+|++. ++..||+||+.|+. ..++ ++.+++++.++|.+ ..++.+|+.+.+||||||||++
T Consensus 839 ~yv~Q~~~~~~~~Tv~E~L~~~a~l~~~~~~~~~~~~~~v~~~l~~l~L~~-------~~d~~v~~~~~~LSgGqrqRl~ 911 (1394)
T TIGR00956 839 GYVQQQDLHLPTSTVRESLRFSAYLRQPKSVSKSEKMEYVEEVIKLLEMES-------YADAVVGVPGEGLNVEQRKRLT 911 (1394)
T ss_pred eeecccccCCCCCCHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHcCChh-------hCCCeeCCCCCCCCHHHhhHHH
Confidence 99999975 45679999999752 1222 34566777777643 2467788888899999999999
Q ss_pred HHHhhccCCC-eeeeeCCCCCcCHHHHHHHHHHHHh--cCCCEEEEEccCCCcc--ccCCEEEEEeCC-eEEEccChHH
Q 037346 493 IARPLYQDAD-IFLLDDPFSPVDDHTGAHLFKFCWV--SSSKTVIYATHQVEFL--PAADLILVIKDG-KITQAGKYSD 565 (1156)
Q Consensus 493 lAral~~~~~-illlDep~s~lD~~~~~~i~~~~~~--~~~~tvi~vtH~~~~~--~~~d~i~~l~~G-~i~~~g~~~~ 565 (1156)
|||||+.+|+ |++||||||+||+.++..+.+.+.+ .+|+|||+++|+++.. ..+|++++|++| ++++.|+..+
T Consensus 912 Ia~aL~~~P~~iLlLDEPTsgLD~~~~~~i~~~L~~la~~g~tvI~t~H~~~~~~~~~~D~vl~L~~GG~iv~~G~~~~ 990 (1394)
T TIGR00956 912 IGVELVAKPKLLLFLDEPTSGLDSQTAWSICKLMRKLADHGQAILCTIHQPSAILFEEFDRLLLLQKGGQTVYFGDLGE 990 (1394)
T ss_pred HHHHHHcCCCeEEEEcCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCCHHHHHhcCEEEEEcCCCEEEEECCccc
Confidence 9999999997 9999999999999999998876644 4689999999999863 579999999987 9999998743
|
|
| >PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=4.2e-31 Score=292.16 Aligned_cols=202 Identities=21% Similarity=0.332 Sum_probs=170.5
Q ss_pred EEEEEEEEEEcCCCCceeeCCCCCCHHHHHHHHhhcccCCCceEEEcCeeCCCCC--------hHHHhhcCeeecccccc
Q 037346 948 VNIRHLQVRYAPNLPLVLRGRTGSGKSTLIQTLFRIVESTAGHILIDGKDISLIG--------LHDLRTRLSIIPQDPTM 1019 (1156)
Q Consensus 948 I~~~~Vsf~Y~~~~~~vL~G~SGsGKSTL~~lL~rl~~p~~G~I~idG~di~~i~--------~~~LR~~i~~VpQdp~L 1019 (1156)
..++||+|...+++.++|.|+||||||||+++|+|+++|++|+|.+||.++...+ ...+|+++++|||++.+
T Consensus 17 ~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~i~~v~q~~~~ 96 (250)
T PRK11264 17 TVLHGIDLEVKPGEVVAIIGPSGSGKTTLLRCINLLEQPEAGTIRVGDITIDTARSLSQQKGLIRQLRQHVGFVFQNFNL 96 (250)
T ss_pred eeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEccccccccchhhHHHHhhhhEEEEecCccc
Confidence 4789999999999999999999999999999999999999999999999987542 35678899999999998
Q ss_pred cc-ccchhccCCC----CCCC----HHHHHHHHHHcCCChHHHhhcCCcccc-------ccccccCCCEEEEecCCcCCC
Q 037346 1020 FE-GTTRSNLDPL----EEHA----DEQIWEALDKCQLGDEVRKKKGKLDSQ-------GRVLLKKSKVLVLDEATASVD 1083 (1156)
Q Consensus 1020 F~-gTIr~Nl~~~----~~~~----deei~~al~~~~l~~~i~~lp~gl~s~-------ARALLr~~~ILiLDEaTS~LD 1083 (1156)
|. .|+++|+.+. .... ++.+.++++..++.+.....+..|..+ ||||+.+|+||||||||++||
T Consensus 97 ~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~Gq~qrv~la~al~~~p~lllLDEPt~~LD 176 (250)
T PRK11264 97 FPHRTVLENIIEGPVIVKGEPKEEATARARELLAKVGLAGKETSYPRRLSGGQQQRVAIARALAMRPEVILFDEPTSALD 176 (250)
T ss_pred CCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCcchhhCChhhCChHHHHHHHHHHHHhcCCCEEEEeCCCccCC
Confidence 86 6999999642 1112 245778899999987766666666544 899999999999999999999
Q ss_pred HHHHHHHHHHHHHhcC-CceEEEeecCcccccc-cCEEEEEeCcEEeeecChhHHhcCCC-ChHHHHHH
Q 037346 1084 TATDNQIQQTLRQHFS-DCTVVTIAHRITSVLD-SAMVLLLNHGLIKEYDSPTKLLENKS-SSFAQLVA 1149 (1156)
Q Consensus 1084 ~~te~~I~~~l~~~~~-~~TvI~IaHrl~ti~~-~D~I~Vl~~G~IvE~G~~~eLl~~~~-g~f~~l~~ 1149 (1156)
+.+.+.+.+.|++..+ ++|+|+|||+++.+.. ||+|++|++|++++.|+++++.+.+. ...+.++.
T Consensus 177 ~~~~~~l~~~l~~~~~~~~tvi~~tH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~~~~~~~~~~~~ 245 (250)
T PRK11264 177 PELVGEVLNTIRQLAQEKRTMVIVTHEMSFARDVADRAIFMDQGRIVEQGPAKALFADPQQPRTRQFLE 245 (250)
T ss_pred HHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEECCEEEEeCCHHHHhcCCCCHHHHHHHH
Confidence 9999999999988753 7899999999999865 99999999999999999999986543 23344443
|
|
| >COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.9e-31 Score=276.89 Aligned_cols=182 Identities=25% Similarity=0.384 Sum_probs=159.2
Q ss_pred EEEEEEEEEEcCCCCceeeCCCCCCHHHHHHHHhhcccCCCceEEEcCeeCCCCCh---HHH-hhcCeeeccccccccc-
Q 037346 948 VNIRHLQVRYAPNLPLVLRGRTGSGKSTLIQTLFRIVESTAGHILIDGKDISLIGL---HDL-RTRLSIIPQDPTMFEG- 1022 (1156)
Q Consensus 948 I~~~~Vsf~Y~~~~~~vL~G~SGsGKSTL~~lL~rl~~p~~G~I~idG~di~~i~~---~~L-R~~i~~VpQdp~LF~g- 1022 (1156)
-.+++|+|...+++-++|.||||||||||+++|.++-.|++|.|.++|.|+..++- ..+ |++||+|+|+..|++.
T Consensus 19 ~~L~~v~l~i~~Ge~vaI~GpSGSGKSTLLniig~ld~pt~G~v~i~g~d~~~l~~~~~~~~R~~~iGfvFQ~~nLl~~l 98 (226)
T COG1136 19 EALKDVNLEIEAGEFVAIVGPSGSGKSTLLNLLGGLDKPTSGEVLINGKDLTKLSEKELAKLRRKKIGFVFQNFNLLPDL 98 (226)
T ss_pred EecccceEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCceEEECCEEcCcCCHHHHHHHHHHhEEEECccCCCCCCC
Confidence 47899999999999999999999999999999999999999999999999999984 334 4569999999998865
Q ss_pred cchhccCC----CCCC---CHHHHHHHHHHcCCChHHH-hhcCCcccc-------ccccccCCCEEEEecCCcCCCHHHH
Q 037346 1023 TTRSNLDP----LEEH---ADEQIWEALDKCQLGDEVR-KKKGKLDSQ-------GRVLLKKSKVLVLDEATASVDTATD 1087 (1156)
Q Consensus 1023 TIr~Nl~~----~~~~---~deei~~al~~~~l~~~i~-~lp~gl~s~-------ARALLr~~~ILiLDEaTS~LD~~te 1087 (1156)
|++||+.. .... ..+.+.+.++.+|+.+... ..|..|.-+ ||||+.+|+||+.||||+|||.+|.
T Consensus 99 tv~ENv~lpl~~~~~~~~~~~~~~~~l~~~lgl~~~~~~~~p~eLSGGqqQRVAIARAL~~~P~iilADEPTgnLD~~t~ 178 (226)
T COG1136 99 TVLENVELPLLIAGKSAGRRKRAAEELLEVLGLEDRLLKKKPSELSGGQQQRVAIARALINNPKIILADEPTGNLDSKTA 178 (226)
T ss_pred CHHHHHHhHHHHcCCChhHHHHHHHHHHHhcCChhhhccCCchhcCHHHHHHHHHHHHHhcCCCeEEeeCccccCChHHH
Confidence 99999973 2221 2456788899999997777 667766644 8999999999999999999999999
Q ss_pred HHHHHHHHHhc--CCceEEEeecCcccccccCEEEEEeCcEEee
Q 037346 1088 NQIQQTLRQHF--SDCTVVTIAHRITSVLDSAMVLLLNHGLIKE 1129 (1156)
Q Consensus 1088 ~~I~~~l~~~~--~~~TvI~IaHrl~ti~~~D~I~Vl~~G~IvE 1129 (1156)
+.|.+.+++.. .++|+|+|||+......|||++.|.+|++.+
T Consensus 179 ~~V~~ll~~~~~~~g~tii~VTHd~~lA~~~dr~i~l~dG~~~~ 222 (226)
T COG1136 179 KEVLELLRELNKERGKTIIMVTHDPELAKYADRVIELKDGKIEE 222 (226)
T ss_pred HHHHHHHHHHHHhcCCEEEEEcCCHHHHHhCCEEEEEeCCeeee
Confidence 99999999874 3789999999999999999999999999544
|
|
| >PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.7e-31 Score=321.89 Aligned_cols=194 Identities=23% Similarity=0.333 Sum_probs=155.3
Q ss_pred ccEEEeeeEEEeCCCCCCCccccceEEeeCCeEEEEEcCCCCChHHHHHHHhCCCCCCCcEEEEcCe-------------
Q 037346 356 TAIEIIDGSFSWDFSSPNPTLRNINLKVFHGMRVAVCGTVGSGKSSCLSCILGGVPKESGIIRLCGT------------- 422 (1156)
Q Consensus 356 ~~i~~~~~~f~~~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKSTll~~i~g~~~~~~G~i~~~g~------------- 422 (1156)
..|+++|+++.+ +++|+|+||++++||+++|+||||||||||+++|+|+.+|++|+|.++|.
T Consensus 249 ~~i~~~~l~~~~-----~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~ 323 (491)
T PRK10982 249 VILEVRNLTSLR-----QPSIRDVSFDLHKGEILGIAGLVGAKRTDIVETLFGIREKSAGTITLHGKKINNHNANEAINH 323 (491)
T ss_pred cEEEEeCccccc-----CcccceeeEEEeCCcEEEEecCCCCCHHHHHHHHcCCCcCCccEEEECCEECCCCCHHHHHHC
Confidence 369999999874 25899999999999999999999999999999999999999999999872
Q ss_pred -EEEEecCCc---CC-CccHHHH-----hhcCCC----CC----HHHHHHHHHHhCCchhhhhCCCCCccccccCCCCCC
Q 037346 423 -KAYVAQSPW---IQ-SGKIEEN-----ILFGKE----MD----RERYERVLEACSLKKDLEVLPFGDQTIIGERGINLS 484 (1156)
Q Consensus 423 -~~~v~Q~~~---~~-~~ti~en-----i~~~~~----~~----~~~~~~~~~~~~l~~~~~~~~~g~~t~v~~~g~~LS 484 (1156)
++|++|++. ++ +.|+.+| +.+... .+ +++.++.++..++..+ .......+||
T Consensus 324 ~i~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~----------~~~~~~~~LS 393 (491)
T PRK10982 324 GFALVTEERRSTGIYAYLDIGFNSLISNIRNYKNKVGLLDNSRMKSDTQWVIDSMRVKTP----------GHRTQIGSLS 393 (491)
T ss_pred CCEEcCCchhhCCcccCCcHHHheehhhhhhhcccccccCcHHHHHHHHHHHHhcCccCC----------CcccccccCC
Confidence 689999863 34 3577666 322111 11 1223444444444211 1245567899
Q ss_pred HHHHHHHHHHHhhccCCCeeeeeCCCCCcCHHHHHHHHHHHHh--cCCCEEEEEccCCCccc-cCCEEEEEeCCeEEEcc
Q 037346 485 GGQKQRIQIARPLYQDADIFLLDDPFSPVDDHTGAHLFKFCWV--SSSKTVIYATHQVEFLP-AADLILVIKDGKITQAG 561 (1156)
Q Consensus 485 gGqkqRi~lAral~~~~~illlDep~s~lD~~~~~~i~~~~~~--~~~~tvi~vtH~~~~~~-~~d~i~~l~~G~i~~~g 561 (1156)
||||||++||||++.+|+||||||||++||+.+++.+++.+.. .+|+|+|++||+++.+. .||++++|++|+++..+
T Consensus 394 gGq~qrv~la~al~~~p~illLDEPt~gLD~~~~~~~~~~l~~l~~~~~tvi~vsHd~~~~~~~~d~v~~l~~g~i~~~~ 473 (491)
T PRK10982 394 GGNQQKVIIGRWLLTQPEILMLDEPTRGIDVGAKFEIYQLIAELAKKDKGIIIISSEMPELLGITDRILVMSNGLVAGIV 473 (491)
T ss_pred cHHHHHHHHHHHHhcCCCEEEEcCCCcccChhHHHHHHHHHHHHHHCCCEEEEECCChHHHHhhCCEEEEEECCEEEEEE
Confidence 9999999999999999999999999999999999999876533 46899999999999885 59999999999999776
Q ss_pred ChH
Q 037346 562 KYS 564 (1156)
Q Consensus 562 ~~~ 564 (1156)
+.+
T Consensus 474 ~~~ 476 (491)
T PRK10982 474 DTK 476 (491)
T ss_pred ccc
Confidence 553
|
|
| >PRK14245 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.7e-31 Score=292.40 Aligned_cols=195 Identities=22% Similarity=0.366 Sum_probs=165.4
Q ss_pred EEEEEEEEEEcCCCCceeeCCCCCCHHHHHHHHhhc---ccC--CCceEEEcCeeCCCC--ChHHHhhcCeeeccccccc
Q 037346 948 VNIRHLQVRYAPNLPLVLRGRTGSGKSTLIQTLFRI---VES--TAGHILIDGKDISLI--GLHDLRTRLSIIPQDPTMF 1020 (1156)
Q Consensus 948 I~~~~Vsf~Y~~~~~~vL~G~SGsGKSTL~~lL~rl---~~p--~~G~I~idG~di~~i--~~~~LR~~i~~VpQdp~LF 1020 (1156)
-.++||+|...+++.++|.|+||||||||+++|.|+ ++| ++|+|.+||.++... +...+|+.++||||++.+|
T Consensus 17 ~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~v~q~~~~~ 96 (250)
T PRK14245 17 HALKGISMEIEEKSVVAFIGPSGCGKSTFLRLFNRMNDLIPATRLEGEIRIDGRNIYDKGVQVDELRKNVGMVFQRPNPF 96 (250)
T ss_pred eEEeeeeEEEeCCCEEEEECCCCCCHHHHHHHHhhhhcccCCCCCceEEEECCEecccccccHHHHhhheEEEecCCccC
Confidence 378999999999998999999999999999999997 344 589999999999764 3467888999999999999
Q ss_pred cccchhccCCCC---C-----CCHHHHHHHHHHcCCChHH----HhhcCCcccc-------ccccccCCCEEEEecCCcC
Q 037346 1021 EGTTRSNLDPLE---E-----HADEQIWEALDKCQLGDEV----RKKKGKLDSQ-------GRVLLKKSKVLVLDEATAS 1081 (1156)
Q Consensus 1021 ~gTIr~Nl~~~~---~-----~~deei~~al~~~~l~~~i----~~lp~gl~s~-------ARALLr~~~ILiLDEaTS~ 1081 (1156)
..|+++|+.+.. . ..+++++++++.+++.+.+ ...+..|..+ ||||+++|+||||||||++
T Consensus 97 ~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~laral~~~p~lllLDEPt~~ 176 (250)
T PRK14245 97 PKSIFENVAYGLRVNGVKDNAFIRQRVEETLKGAALWDEVKDKLKESAFALSGGQQQRLCIARAMAVSPSVLLMDEPASA 176 (250)
T ss_pred cccHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHcCCCcchhhhhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCCcc
Confidence 999999996421 1 1234678899999986543 3334444433 8999999999999999999
Q ss_pred CCHHHHHHHHHHHHHhcCCceEEEeecCccccc-ccCEEEEEeCcEEeeecChhHHhcCCCC
Q 037346 1082 VDTATDNQIQQTLRQHFSDCTVVTIAHRITSVL-DSAMVLLLNHGLIKEYDSPTKLLENKSS 1142 (1156)
Q Consensus 1082 LD~~te~~I~~~l~~~~~~~TvI~IaHrl~ti~-~~D~I~Vl~~G~IvE~G~~~eLl~~~~g 1142 (1156)
||+.+.+.+.+.|++..+++|||+|||+++.+. .||+|++|++|++++.|+++++++++..
T Consensus 177 LD~~~~~~l~~~l~~~~~~~tiiivtH~~~~~~~~~d~v~~l~~G~~~~~~~~~~~~~~~~~ 238 (250)
T PRK14245 177 LDPISTAKVEELIHELKKDYTIVIVTHNMQQAARVSDKTAFFYMGEMVEYDDTKKIFTNPEK 238 (250)
T ss_pred CCHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHhhCCEEEEEECCEEEEECCHHHHhcCCCC
Confidence 999999999999999877899999999999885 5999999999999999999999876543
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST 
Original result of BLAST against Protein Data Bank
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() | |
| Query | 1156 | ||||
| 2cbz_A | 237 | Structure Of The Human Multidrug Resistance Protein | 2e-51 | ||
| 4f4c_A | 1321 | The Crystal Structure Of The Multi-Drug Transporter | 2e-43 | ||
| 4f4c_A | 1321 | The Crystal Structure Of The Multi-Drug Transporter | 4e-14 | ||
| 1q3h_A | 286 | Mouse Cftr Nbd1 With Amp.Pnp Length = 286 | 1e-41 | ||
| 1r0z_A | 286 | Phosphorylated Cystic Fibrosis Transmembrane Conduc | 4e-41 | ||
| 1xf9_A | 283 | Structure Of Nbd1 From Murine Cftr- F508s Mutant Le | 9e-41 | ||
| 1xfa_A | 283 | Structure Of Nbd1 From Murine Cftr- F508r Mutant Le | 1e-40 | ||
| 3si7_A | 285 | The Crystal Structure Of The Nbd1 Domain Of The Mou | 1e-39 | ||
| 1xmi_A | 291 | Crystal Structure Of Human F508a Nbd1 Domain With A | 1e-39 | ||
| 2bbs_A | 290 | Human Deltaf508 Nbd1 With Three Solubilizing Mutati | 9e-39 | ||
| 2bbt_A | 290 | Human Deltaf508 Nbd1 With Two Solublizing Mutations | 3e-38 | ||
| 2bbo_A | 291 | Human Nbd1 With Phe508 Length = 291 | 4e-38 | ||
| 2pzg_A | 241 | Minimal Human Cftr First Nucleotide Binding Domain | 4e-38 | ||
| 2pze_A | 229 | Minimal Human Cftr First Nucleotide Binding Domain | 6e-38 | ||
| 1xmj_A | 290 | Crystal Structure Of Human Deltaf508 Human Nbd1 Dom | 6e-36 | ||
| 2pzf_A | 228 | Minimal Human Cftr First Nucleotide Binding Domain | 8e-36 | ||
| 3gd7_A | 390 | Crystal Structure Of Human Nbd2 Complexed With N6- | 1e-24 | ||
| 3qf4_B | 598 | Crystal Structure Of A Heterodimeric Abc Transporte | 3e-23 | ||
| 4ayt_A | 595 | Structure Of The Human Mitochondrial Abc Transporte | 3e-22 | ||
| 4ayt_A | 595 | Structure Of The Human Mitochondrial Abc Transporte | 4e-20 | ||
| 4ayw_A | 619 | Structure Of The Human Mitochondrial Abc Transporte | 5e-22 | ||
| 4ayw_A | 619 | Structure Of The Human Mitochondrial Abc Transporte | 1e-19 | ||
| 3b5x_A | 582 | Crystal Structure Of Msba From Vibrio Cholerae Leng | 2e-21 | ||
| 3b5x_A | 582 | Crystal Structure Of Msba From Vibrio Cholerae Leng | 2e-19 | ||
| 2hyd_A | 578 | Multidrug Abc Transporter Sav1866 Length = 578 | 7e-21 | ||
| 2hyd_A | 578 | Multidrug Abc Transporter Sav1866 Length = 578 | 1e-12 | ||
| 3b5y_A | 582 | Crystal Structure Of Msba From Salmonella Typhimuri | 9e-21 | ||
| 3b5y_A | 582 | Crystal Structure Of Msba From Salmonella Typhimuri | 7e-18 | ||
| 3b5w_A | 582 | Crystal Structure Of Eschericia Coli Msba Length = | 2e-20 | ||
| 3b5w_A | 582 | Crystal Structure Of Eschericia Coli Msba Length = | 1e-17 | ||
| 3nh6_A | 306 | Nucleotide Binding Domain Of Human Abcb6 (Apo Struc | 2e-20 | ||
| 3nh6_A | 306 | Nucleotide Binding Domain Of Human Abcb6 (Apo Struc | 6e-16 | ||
| 2ghi_A | 260 | Crystal Structure Of Plasmodium Yoelii Multidrug Re | 2e-19 | ||
| 2ghi_A | 260 | Crystal Structure Of Plasmodium Yoelii Multidrug Re | 4e-13 | ||
| 3qf4_A | 587 | Crystal Structure Of A Heterodimeric Abc Transporte | 5e-19 | ||
| 3qf4_A | 587 | Crystal Structure Of A Heterodimeric Abc Transporte | 5e-18 | ||
| 3g5u_A | 1284 | Structure Of P-Glycoprotein Reveals A Molecular Bas | 3e-18 | ||
| 3g5u_A | 1284 | Structure Of P-Glycoprotein Reveals A Molecular Bas | 8e-18 | ||
| 3g5u_A | 1284 | Structure Of P-Glycoprotein Reveals A Molecular Bas | 4e-17 | ||
| 3g60_A | 1284 | Structure Of P-Glycoprotein Reveals A Molecular Bas | 4e-18 | ||
| 3g60_A | 1284 | Structure Of P-Glycoprotein Reveals A Molecular Bas | 9e-18 | ||
| 3g60_A | 1284 | Structure Of P-Glycoprotein Reveals A Molecular Bas | 4e-17 | ||
| 3b5j_A | 243 | Crystal Structures Of The S504a Mutant Of An Isolat | 8e-18 | ||
| 3b5j_A | 243 | Crystal Structures Of The S504a Mutant Of An Isolat | 2e-10 | ||
| 1mv5_A | 243 | Crystal Structure Of Lmra Atp-Binding Domain Length | 1e-17 | ||
| 2pmk_A | 243 | Crystal Structures Of An Isolated Abc-Atpase In Com | 1e-17 | ||
| 2pmk_A | 243 | Crystal Structures Of An Isolated Abc-Atpase In Com | 2e-10 | ||
| 1mt0_A | 241 | Atp-Binding Domain Of Haemolysin B From Escherichia | 1e-17 | ||
| 1mt0_A | 241 | Atp-Binding Domain Of Haemolysin B From Escherichia | 7e-10 | ||
| 2ff7_A | 247 | The Abc-Atpase Of The Abc-Transporter Hlyb In The A | 1e-17 | ||
| 2ff7_A | 247 | The Abc-Atpase Of The Abc-Transporter Hlyb In The A | 7e-10 | ||
| 2ffb_A | 247 | The Crystal Structure Of The Hlyb-Nbd E631q Mutant | 2e-17 | ||
| 2ffb_A | 247 | The Crystal Structure Of The Hlyb-Nbd E631q Mutant | 2e-09 | ||
| 1xef_A | 241 | Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DI | 2e-16 | ||
| 1xef_A | 241 | Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DI | 9e-09 | ||
| 2ffa_A | 247 | Crystal Structure Of Abc-Atpase H662a Of The Abc-Tr | 2e-16 | ||
| 2ffa_A | 247 | Crystal Structure Of Abc-Atpase H662a Of The Abc-Tr | 9e-09 | ||
| 3d31_A | 348 | Modbc From Methanosarcina Acetivorans Length = 348 | 1e-15 | ||
| 4hlu_D | 268 | Structure Of The Ecfa-a' Heterodimer Bound To Adp L | 4e-15 | ||
| 2ixf_A | 271 | Crystal Structure Of The Atpase Domain Of Tap1 With | 3e-13 | ||
| 2ixf_A | 271 | Crystal Structure Of The Atpase Domain Of Tap1 With | 1e-06 | ||
| 1q1b_A | 381 | Crystal Structure Of E. Coli Malk In The Nucleotide | 1e-12 | ||
| 1q12_A | 381 | Crystal Structure Of The Atp-bound E. Coli Malk Len | 1e-12 | ||
| 2ixe_A | 271 | Crystal Structure Of The Atpase Domain Of Tap1 With | 2e-12 | ||
| 2ixe_A | 271 | Crystal Structure Of The Atpase Domain Of Tap1 With | 2e-05 | ||
| 2r6g_A | 381 | The Crystal Structure Of The E. Coli Maltose Transp | 3e-12 | ||
| 2it1_A | 362 | Structure Of Ph0203 Protein From Pyrococcus Horikos | 2e-11 | ||
| 2ixg_A | 271 | Crystal Structure Of The Atpase Domain Of Tap1 With | 5e-11 | ||
| 2ixg_A | 271 | Crystal Structure Of The Atpase Domain Of Tap1 With | 3e-05 | ||
| 1jj7_A | 260 | Crystal Structure Of The C-Terminal Atpase Domain O | 1e-10 | ||
| 1jj7_A | 260 | Crystal Structure Of The C-Terminal Atpase Domain O | 2e-05 | ||
| 1oxs_C | 353 | Crystal Structure Of Glcv, The Abc-Atpase Of The Gl | 1e-10 | ||
| 1oxx_K | 353 | Crystal Structure Of Glcv, The Abc-Atpase Of The Gl | 7e-10 | ||
| 1f3o_A | 235 | Crystal Structure Of Mj0796 Atp-Binding Cassette Le | 7e-10 | ||
| 2yz2_A | 266 | Crystal Structure Of The Abc Transporter In The Cob | 8e-10 | ||
| 1l2t_A | 235 | Dimeric Structure Of Mj0796, A Bacterial Abc Transp | 9e-10 | ||
| 4hlu_A | 268 | Structure Of The Ecfa-a' Heterodimer Bound To Adp L | 9e-10 | ||
| 3tif_A | 235 | Dimeric Structure Of A Post-Hydrolysis State Of The | 2e-09 | ||
| 1z47_A | 355 | Structure Of The Atpase Subunit Cysa Of The Putativ | 9e-09 | ||
| 3fvq_A | 359 | Crystal Structure Of The Nucleotide Binding Domain | 1e-07 | ||
| 2nq2_C | 253 | An Inward-Facing Conformation Of A Putative Metal-C | 2e-07 | ||
| 2olj_A | 263 | Abc Protein Artp In Complex With AdpMG2+ Length = 2 | 4e-07 | ||
| 2olj_A | 263 | Abc Protein Artp In Complex With AdpMG2+ Length = 2 | 9e-04 | ||
| 3c41_J | 242 | Abc Protein Artp In Complex With Amp-PnpMG2+ Length | 5e-07 | ||
| 3c41_J | 242 | Abc Protein Artp In Complex With Amp-PnpMG2+ Length | 9e-04 | ||
| 3gfo_A | 275 | Structure Of Cbio1 From Clostridium Perfringens: Pa | 7e-07 | ||
| 1v43_A | 372 | Crystal Structure Of Atpase Subunit Of Abc Sugar Tr | 8e-07 | ||
| 1vci_A | 373 | Crystal Structure Of The Atp-binding Cassette Of Mu | 8e-07 | ||
| 1b0u_A | 262 | Atp-Binding Subunit Of The Histidine Permease From | 9e-07 | ||
| 2onk_A | 240 | Abc Transporter Modbc In Complex With Its Binding P | 1e-06 | ||
| 3dhw_C | 343 | Crystal Structure Of Methionine Importer Metni Leng | 1e-06 | ||
| 2yyz_A | 359 | Crystal Structure Of Sugar Abc Transporter, Atp-Bin | 1e-06 | ||
| 3tui_C | 366 | Inward Facing Conformations Of The Metni Methionine | 2e-06 | ||
| 1g29_1 | 372 | Malk Length = 372 | 2e-06 | ||
| 3tuj_C | 366 | Inward Facing Conformations Of The Metni Methionine | 4e-06 | ||
| 2ihy_A | 279 | Structure Of The Staphylococcus Aureus Putative Atp | 7e-06 | ||
| 4g1u_C | 266 | X-Ray Structure Of The Bacterial Heme Transporter H | 2e-05 | ||
| 4fwi_B | 334 | Crystal Structure Of The Nucleotide-binding Domain | 4e-05 | ||
| 2d62_A | 375 | Crystal Structure Of Multiple Sugar Binding Transpo | 1e-04 | ||
| 2pcj_A | 224 | Crystal Structure Of Abc Transporter (Aq_297) From | 3e-04 | ||
| 2iwh_A | 986 | Structure Of Yeast Elongation Factor 3 In Complex W | 4e-04 | ||
| 3bk7_A | 607 | Structure Of The Complete Abce1RNAASE-L Inhibitor P | 5e-04 | ||
| 2pjz_A | 263 | The Crystal Structure Of Putative Cobalt Transport | 5e-04 | ||
| 3j15_B | 593 | Model Of Ribosome-Bound Archaeal Pelota And Abce1 L | 5e-04 | ||
| 2iw3_A | 986 | Elongation Factor 3 In Complex With Adp Length = 98 | 7e-04 | ||
| 2ix8_A | 976 | Model For Eef3 Bound To An 80s Ribosome Length = 97 | 7e-04 |
| >pdb|2CBZ|A Chain A, Structure Of The Human Multidrug Resistance Protein 1 Nucleotide Binding Domain 1 Length = 237 | Back alignment and structure |
|
| >pdb|4F4C|A Chain A, The Crystal Structure Of The Multi-Drug Transporter Length = 1321 | Back alignment and structure |
|
| >pdb|4F4C|A Chain A, The Crystal Structure Of The Multi-Drug Transporter Length = 1321 | Back alignment and structure |
|
| >pdb|1Q3H|A Chain A, Mouse Cftr Nbd1 With Amp.Pnp Length = 286 | Back alignment and structure |
|
| >pdb|1R0Z|A Chain A, Phosphorylated Cystic Fibrosis Transmembrane Conductance Regulator (Cftr) Nucleotide-Binding Domain One (Nbd1) With Atp Length = 286 | Back alignment and structure |
|
| >pdb|1XF9|A Chain A, Structure Of Nbd1 From Murine Cftr- F508s Mutant Length = 283 | Back alignment and structure |
|
| >pdb|1XFA|A Chain A, Structure Of Nbd1 From Murine Cftr- F508r Mutant Length = 283 | Back alignment and structure |
|
| >pdb|3SI7|A Chain A, The Crystal Structure Of The Nbd1 Domain Of The Mouse Cftr Protein, Deltaf508 Mutant Length = 285 | Back alignment and structure |
|
| >pdb|1XMI|A Chain A, Crystal Structure Of Human F508a Nbd1 Domain With Atp Length = 291 | Back alignment and structure |
|
| >pdb|2BBS|A Chain A, Human Deltaf508 Nbd1 With Three Solubilizing Mutations Length = 290 | Back alignment and structure |
|
| >pdb|2BBT|A Chain A, Human Deltaf508 Nbd1 With Two Solublizing Mutations. Length = 290 | Back alignment and structure |
|
| >pdb|2BBO|A Chain A, Human Nbd1 With Phe508 Length = 291 | Back alignment and structure |
|
| >pdb|2PZG|A Chain A, Minimal Human Cftr First Nucleotide Binding Domain As A Monomer Length = 241 | Back alignment and structure |
|
| >pdb|2PZE|A Chain A, Minimal Human Cftr First Nucleotide Binding Domain As A Head-To-Tail Dimer Length = 229 | Back alignment and structure |
|
| >pdb|1XMJ|A Chain A, Crystal Structure Of Human Deltaf508 Human Nbd1 Domain With Atp Length = 290 | Back alignment and structure |
|
| >pdb|2PZF|A Chain A, Minimal Human Cftr First Nucleotide Binding Domain As A Head-To-Tail Dimer With Delta F508 Length = 228 | Back alignment and structure |
|
| >pdb|3GD7|A Chain A, Crystal Structure Of Human Nbd2 Complexed With N6- Phenylethyl-Atp (P-Atp) Length = 390 | Back alignment and structure |
|
| >pdb|3QF4|B Chain B, Crystal Structure Of A Heterodimeric Abc Transporter In Its Inward- Facing Conformation Length = 598 | Back alignment and structure |
|
| >pdb|4AYT|A Chain A, Structure Of The Human Mitochondrial Abc Transporter, Abcb10 Length = 595 | Back alignment and structure |
|
| >pdb|4AYT|A Chain A, Structure Of The Human Mitochondrial Abc Transporter, Abcb10 Length = 595 | Back alignment and structure |
|
| >pdb|4AYW|A Chain A, Structure Of The Human Mitochondrial Abc Transporter, Abcb10 (plate Form) Length = 619 | Back alignment and structure |
|
| >pdb|4AYW|A Chain A, Structure Of The Human Mitochondrial Abc Transporter, Abcb10 (plate Form) Length = 619 | Back alignment and structure |
|
| >pdb|3B5X|A Chain A, Crystal Structure Of Msba From Vibrio Cholerae Length = 582 | Back alignment and structure |
|
| >pdb|3B5X|A Chain A, Crystal Structure Of Msba From Vibrio Cholerae Length = 582 | Back alignment and structure |
|
| >pdb|2HYD|A Chain A, Multidrug Abc Transporter Sav1866 Length = 578 | Back alignment and structure |
|
| >pdb|2HYD|A Chain A, Multidrug Abc Transporter Sav1866 Length = 578 | Back alignment and structure |
|
| >pdb|3B5Y|A Chain A, Crystal Structure Of Msba From Salmonella Typhimurium With Amppnp Length = 582 | Back alignment and structure |
|
| >pdb|3B5Y|A Chain A, Crystal Structure Of Msba From Salmonella Typhimurium With Amppnp Length = 582 | Back alignment and structure |
|
| >pdb|3B5W|A Chain A, Crystal Structure Of Eschericia Coli Msba Length = 582 | Back alignment and structure |
|
| >pdb|3B5W|A Chain A, Crystal Structure Of Eschericia Coli Msba Length = 582 | Back alignment and structure |
|
| >pdb|3NH6|A Chain A, Nucleotide Binding Domain Of Human Abcb6 (Apo Structure) Length = 306 | Back alignment and structure |
|
| >pdb|3NH6|A Chain A, Nucleotide Binding Domain Of Human Abcb6 (Apo Structure) Length = 306 | Back alignment and structure |
|
| >pdb|2GHI|A Chain A, Crystal Structure Of Plasmodium Yoelii Multidrug Resistance Protein 2 Length = 260 | Back alignment and structure |
|
| >pdb|2GHI|A Chain A, Crystal Structure Of Plasmodium Yoelii Multidrug Resistance Protein 2 Length = 260 | Back alignment and structure |
|
| >pdb|3QF4|A Chain A, Crystal Structure Of A Heterodimeric Abc Transporter In Its Inward- Facing Conformation Length = 587 | Back alignment and structure |
|
| >pdb|3QF4|A Chain A, Crystal Structure Of A Heterodimeric Abc Transporter In Its Inward- Facing Conformation Length = 587 | Back alignment and structure |
|
| >pdb|3G5U|A Chain A, Structure Of P-Glycoprotein Reveals A Molecular Basis For Poly-Specific Drug Binding Length = 1284 | Back alignment and structure |
|
| >pdb|3G5U|A Chain A, Structure Of P-Glycoprotein Reveals A Molecular Basis For Poly-Specific Drug Binding Length = 1284 | Back alignment and structure |
|
| >pdb|3G5U|A Chain A, Structure Of P-Glycoprotein Reveals A Molecular Basis For Poly-Specific Drug Binding Length = 1284 | Back alignment and structure |
|
| >pdb|3G60|A Chain A, Structure Of P-Glycoprotein Reveals A Molecular Basis For Poly-Specific Drug Binding Length = 1284 | Back alignment and structure |
|
| >pdb|3G60|A Chain A, Structure Of P-Glycoprotein Reveals A Molecular Basis For Poly-Specific Drug Binding Length = 1284 | Back alignment and structure |
|
| >pdb|3G60|A Chain A, Structure Of P-Glycoprotein Reveals A Molecular Basis For Poly-Specific Drug Binding Length = 1284 | Back alignment and structure |
|
| >pdb|3B5J|A Chain A, Crystal Structures Of The S504a Mutant Of An Isolated Abc-atpase In Complex With Tnp-adp Length = 243 | Back alignment and structure |
|
| >pdb|3B5J|A Chain A, Crystal Structures Of The S504a Mutant Of An Isolated Abc-atpase In Complex With Tnp-adp Length = 243 | Back alignment and structure |
|
| >pdb|1MV5|A Chain A, Crystal Structure Of Lmra Atp-Binding Domain Length = 243 | Back alignment and structure |
|
| >pdb|2PMK|A Chain A, Crystal Structures Of An Isolated Abc-Atpase In Complex With Tnp-Adp Length = 243 | Back alignment and structure |
|
| >pdb|2PMK|A Chain A, Crystal Structures Of An Isolated Abc-Atpase In Complex With Tnp-Adp Length = 243 | Back alignment and structure |
|
| >pdb|1MT0|A Chain A, Atp-Binding Domain Of Haemolysin B From Escherichia Coli Length = 241 | Back alignment and structure |
|
| >pdb|1MT0|A Chain A, Atp-Binding Domain Of Haemolysin B From Escherichia Coli Length = 241 | Back alignment and structure |
|
| >pdb|2FF7|A Chain A, The Abc-Atpase Of The Abc-Transporter Hlyb In The Adp Bound State Length = 247 | Back alignment and structure |
|
| >pdb|2FF7|A Chain A, The Abc-Atpase Of The Abc-Transporter Hlyb In The Adp Bound State Length = 247 | Back alignment and structure |
|
| >pdb|2FFB|A Chain A, The Crystal Structure Of The Hlyb-Nbd E631q Mutant In Complex With Adp Length = 247 | Back alignment and structure |
|
| >pdb|2FFB|A Chain A, The Crystal Structure Of The Hlyb-Nbd E631q Mutant In Complex With Adp Length = 247 | Back alignment and structure |
|
| >pdb|1XEF|A Chain A, Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DIMER OF HLYB-Nbd Length = 241 | Back alignment and structure |
|
| >pdb|1XEF|A Chain A, Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DIMER OF HLYB-Nbd Length = 241 | Back alignment and structure |
|
| >pdb|2FFA|A Chain A, Crystal Structure Of Abc-Atpase H662a Of The Abc-Transporter Hlyb In Complex With Adp Length = 247 | Back alignment and structure |
|
| >pdb|2FFA|A Chain A, Crystal Structure Of Abc-Atpase H662a Of The Abc-Transporter Hlyb In Complex With Adp Length = 247 | Back alignment and structure |
|
| >pdb|3D31|A Chain A, Modbc From Methanosarcina Acetivorans Length = 348 | Back alignment and structure |
|
| >pdb|4HLU|D Chain D, Structure Of The Ecfa-a' Heterodimer Bound To Adp Length = 268 | Back alignment and structure |
|
| >pdb|2IXF|A Chain A, Crystal Structure Of The Atpase Domain Of Tap1 With Atp (D645q, Q678h Mutant) Length = 271 | Back alignment and structure |
|
| >pdb|2IXF|A Chain A, Crystal Structure Of The Atpase Domain Of Tap1 With Atp (D645q, Q678h Mutant) Length = 271 | Back alignment and structure |
|
| >pdb|1Q1B|A Chain A, Crystal Structure Of E. Coli Malk In The Nucleotide-Free Form Length = 381 | Back alignment and structure |
|
| >pdb|1Q12|A Chain A, Crystal Structure Of The Atp-bound E. Coli Malk Length = 381 | Back alignment and structure |
|
| >pdb|2IXE|A Chain A, Crystal Structure Of The Atpase Domain Of Tap1 With Atp (d645n Mutant) Length = 271 | Back alignment and structure |
|
| >pdb|2IXE|A Chain A, Crystal Structure Of The Atpase Domain Of Tap1 With Atp (d645n Mutant) Length = 271 | Back alignment and structure |
|
| >pdb|2R6G|A Chain A, The Crystal Structure Of The E. Coli Maltose Transporter Length = 381 | Back alignment and structure |
|
| >pdb|2IT1|A Chain A, Structure Of Ph0203 Protein From Pyrococcus Horikoshii Length = 362 | Back alignment and structure |
|
| >pdb|2IXG|A Chain A, Crystal Structure Of The Atpase Domain Of Tap1 With Atp (S621a, G622v, D645n Mutant) Length = 271 | Back alignment and structure |
|
| >pdb|2IXG|A Chain A, Crystal Structure Of The Atpase Domain Of Tap1 With Atp (S621a, G622v, D645n Mutant) Length = 271 | Back alignment and structure |
|
| >pdb|1JJ7|A Chain A, Crystal Structure Of The C-Terminal Atpase Domain Of Human Tap1 Length = 260 | Back alignment and structure |
|
| >pdb|1JJ7|A Chain A, Crystal Structure Of The C-Terminal Atpase Domain Of Human Tap1 Length = 260 | Back alignment and structure |
|
| >pdb|1OXS|C Chain C, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose Abc Transporter From Sulfolobus Solfataricus Length = 353 | Back alignment and structure |
|
| >pdb|1OXX|K Chain K, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose Abc Transporter From Sulfolobus Solfataricus Length = 353 | Back alignment and structure |
|
| >pdb|1F3O|A Chain A, Crystal Structure Of Mj0796 Atp-Binding Cassette Length = 235 | Back alignment and structure |
|
| >pdb|2YZ2|A Chain A, Crystal Structure Of The Abc Transporter In The Cobalt Transport System Length = 266 | Back alignment and structure |
|
| >pdb|1L2T|A Chain A, Dimeric Structure Of Mj0796, A Bacterial Abc Transporter Cassette Length = 235 | Back alignment and structure |
|
| >pdb|4HLU|A Chain A, Structure Of The Ecfa-a' Heterodimer Bound To Adp Length = 268 | Back alignment and structure |
|
| >pdb|3TIF|A Chain A, Dimeric Structure Of A Post-Hydrolysis State Of The Atp-Binding Cassette Mj0796 Bound To Adp And Pi Length = 235 | Back alignment and structure |
|
| >pdb|1Z47|A Chain A, Structure Of The Atpase Subunit Cysa Of The Putative Sulfate Atp-Binding Cassette (Abc) Transporter From Alicyclobacillus Acidocaldarius Length = 355 | Back alignment and structure |
|
| >pdb|3FVQ|A Chain A, Crystal Structure Of The Nucleotide Binding Domain Fbpc Complexed With Atp Length = 359 | Back alignment and structure |
|
| >pdb|2NQ2|C Chain C, An Inward-Facing Conformation Of A Putative Metal-Chelate Type Abc Transporter. Length = 253 | Back alignment and structure |
|
| >pdb|2OLJ|A Chain A, Abc Protein Artp In Complex With AdpMG2+ Length = 263 | Back alignment and structure |
|
| >pdb|2OLJ|A Chain A, Abc Protein Artp In Complex With AdpMG2+ Length = 263 | Back alignment and structure |
|
| >pdb|3C41|J Chain J, Abc Protein Artp In Complex With Amp-PnpMG2+ Length = 242 | Back alignment and structure |
|
| >pdb|3C41|J Chain J, Abc Protein Artp In Complex With Amp-PnpMG2+ Length = 242 | Back alignment and structure |
|
| >pdb|3GFO|A Chain A, Structure Of Cbio1 From Clostridium Perfringens: Part Of The Abc Transporter Complex Cbionq Length = 275 | Back alignment and structure |
|
| >pdb|1V43|A Chain A, Crystal Structure Of Atpase Subunit Of Abc Sugar Transporter Length = 372 | Back alignment and structure |
|
| >pdb|1VCI|A Chain A, Crystal Structure Of The Atp-binding Cassette Of Multisugar Transporter From Pyrococcus Horikoshii Ot3 Complexed With Atp Length = 373 | Back alignment and structure |
|
| >pdb|1B0U|A Chain A, Atp-Binding Subunit Of The Histidine Permease From Salmonella Typhimurium Length = 262 | Back alignment and structure |
|
| >pdb|2ONK|A Chain A, Abc Transporter Modbc In Complex With Its Binding Protein Moda Length = 240 | Back alignment and structure |
|
| >pdb|3DHW|C Chain C, Crystal Structure Of Methionine Importer Metni Length = 343 | Back alignment and structure |
|
| >pdb|2YYZ|A Chain A, Crystal Structure Of Sugar Abc Transporter, Atp-Binding Protein Length = 359 | Back alignment and structure |
|
| >pdb|3TUI|C Chain C, Inward Facing Conformations Of The Metni Methionine Abc Transporter: Cy5 Native Crystal Form Length = 366 | Back alignment and structure |
|
| >pdb|1G29|1 Chain 1, Malk Length = 372 | Back alignment and structure |
|
| >pdb|3TUJ|C Chain C, Inward Facing Conformations Of The Metni Methionine Abc Transporter: Dm Crystal Form Length = 366 | Back alignment and structure |
|
| >pdb|2IHY|A Chain A, Structure Of The Staphylococcus Aureus Putative Atpase Subunit Of An Atp-Binding Cassette (Abc) Transporter Length = 279 | Back alignment and structure |
|
| >pdb|4G1U|C Chain C, X-Ray Structure Of The Bacterial Heme Transporter Hmuuv From Yersinia Pestis Length = 266 | Back alignment and structure |
|
| >pdb|4FWI|B Chain B, Crystal Structure Of The Nucleotide-binding Domain Of A Dipeptide Abc Transporter Length = 334 | Back alignment and structure |
|
| >pdb|2D62|A Chain A, Crystal Structure Of Multiple Sugar Binding Transport Atp- Binding Protein Length = 375 | Back alignment and structure |
|
| >pdb|2PCJ|A Chain A, Crystal Structure Of Abc Transporter (Aq_297) From Aquifex Aeolicus Vf5 Length = 224 | Back alignment and structure |
|
| >pdb|2IWH|A Chain A, Structure Of Yeast Elongation Factor 3 In Complex With Adpnp Length = 986 | Back alignment and structure |
|
| >pdb|3BK7|A Chain A, Structure Of The Complete Abce1RNAASE-L Inhibitor Protein From Pyrococcus Abysii Length = 607 | Back alignment and structure |
|
| >pdb|2PJZ|A Chain A, The Crystal Structure Of Putative Cobalt Transport Atp- Binding Protein (cbio-2), St1066 Length = 263 | Back alignment and structure |
|
| >pdb|3J15|B Chain B, Model Of Ribosome-Bound Archaeal Pelota And Abce1 Length = 593 | Back alignment and structure |
|
| >pdb|2IW3|A Chain A, Elongation Factor 3 In Complex With Adp Length = 986 | Back alignment and structure |
|
| >pdb|2IX8|A Chain A, Model For Eef3 Bound To An 80s Ribosome Length = 976 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST 
Original result of RPS-BLAST against PDB70 database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| Query | 1156 | |||
| 2bbs_A | 290 | Cystic fibrosis transmembrane conductance regulato | 1e-123 | |
| 2bbs_A | 290 | Cystic fibrosis transmembrane conductance regulato | 2e-10 | |
| 2cbz_A | 237 | Multidrug resistance-associated protein 1; ABC pro | 1e-123 | |
| 2cbz_A | 237 | Multidrug resistance-associated protein 1; ABC pro | 3e-09 | |
| 2pze_A | 229 | Cystic fibrosis transmembrane conductance regulat; | 1e-120 | |
| 2pze_A | 229 | Cystic fibrosis transmembrane conductance regulat; | 7e-11 | |
| 3gd7_A | 390 | Fusion complex of cystic fibrosis transmembrane co | 1e-108 | |
| 3gd7_A | 390 | Fusion complex of cystic fibrosis transmembrane co | 4e-25 | |
| 3g5u_A | 1284 | MCG1178, multidrug resistance protein 1A; P-glycop | 2e-77 | |
| 3g5u_A | 1284 | MCG1178, multidrug resistance protein 1A; P-glycop | 2e-37 | |
| 3g5u_A | 1284 | MCG1178, multidrug resistance protein 1A; P-glycop | 2e-34 | |
| 3b60_A | 582 | Lipid A export ATP-binding/permease protein MSBA; | 9e-51 | |
| 3b60_A | 582 | Lipid A export ATP-binding/permease protein MSBA; | 4e-32 | |
| 3b5x_A | 582 | Lipid A export ATP-binding/permease protein MSBA; | 1e-50 | |
| 3b5x_A | 582 | Lipid A export ATP-binding/permease protein MSBA; | 1e-32 | |
| 4a82_A | 578 | Cystic fibrosis transmembrane conductance regulat; | 3e-47 | |
| 4a82_A | 578 | Cystic fibrosis transmembrane conductance regulat; | 1e-29 | |
| 3qf4_B | 598 | Uncharacterized ABC transporter ATP-binding prote | 3e-41 | |
| 3qf4_B | 598 | Uncharacterized ABC transporter ATP-binding prote | 4e-19 | |
| 3qf4_A | 587 | ABC transporter, ATP-binding protein; multidrug tr | 1e-39 | |
| 3qf4_A | 587 | ABC transporter, ATP-binding protein; multidrug tr | 4e-30 | |
| 2yl4_A | 595 | ATP-binding cassette SUB-family B member 10, mitoc | 8e-39 | |
| 2yl4_A | 595 | ATP-binding cassette SUB-family B member 10, mitoc | 6e-27 | |
| 3nh6_A | 306 | ATP-binding cassette SUB-family B member 6, mitoc; | 2e-36 | |
| 3nh6_A | 306 | ATP-binding cassette SUB-family B member 6, mitoc; | 1e-30 | |
| 2ff7_A | 247 | Alpha-hemolysin translocation ATP-binding protein | 5e-35 | |
| 2ff7_A | 247 | Alpha-hemolysin translocation ATP-binding protein | 2e-28 | |
| 1mv5_A | 243 | LMRA, multidrug resistance ABC transporter ATP-bin | 9e-34 | |
| 1mv5_A | 243 | LMRA, multidrug resistance ABC transporter ATP-bin | 5e-30 | |
| 2ghi_A | 260 | Transport protein; multidrug resistance protein, M | 5e-32 | |
| 2ghi_A | 260 | Transport protein; multidrug resistance protein, M | 2e-27 | |
| 2ixe_A | 271 | Antigen peptide transporter 1; ABC ATPase, hydrola | 7e-29 | |
| 2ixe_A | 271 | Antigen peptide transporter 1; ABC ATPase, hydrola | 2e-26 | |
| 2ihy_A | 279 | ABC transporter, ATP-binding protein; ATPase, ABC | 8e-27 | |
| 2ihy_A | 279 | ABC transporter, ATP-binding protein; ATPase, ABC | 2e-14 | |
| 2pjz_A | 263 | Hypothetical protein ST1066; ATP binding protein, | 9e-26 | |
| 2pjz_A | 263 | Hypothetical protein ST1066; ATP binding protein, | 4e-13 | |
| 2nq2_C | 253 | Hypothetical ABC transporter ATP-binding protein H | 2e-24 | |
| 2nq2_C | 253 | Hypothetical ABC transporter ATP-binding protein H | 2e-09 | |
| 2yz2_A | 266 | Putative ABC transporter ATP-binding protein TM_0; | 4e-20 | |
| 2yz2_A | 266 | Putative ABC transporter ATP-binding protein TM_0; | 7e-19 | |
| 3gfo_A | 275 | Cobalt import ATP-binding protein CBIO 1; structur | 2e-19 | |
| 3gfo_A | 275 | Cobalt import ATP-binding protein CBIO 1; structur | 1e-15 | |
| 3j16_B | 608 | RLI1P; ribosome recycling, translation, eukarya, r | 2e-18 | |
| 3j16_B | 608 | RLI1P; ribosome recycling, translation, eukarya, r | 7e-16 | |
| 3j16_B | 608 | RLI1P; ribosome recycling, translation, eukarya, r | 7e-07 | |
| 3j16_B | 608 | RLI1P; ribosome recycling, translation, eukarya, r | 5e-06 | |
| 3bk7_A | 607 | ABC transporter ATP-binding protein; ABC ATPase, i | 4e-18 | |
| 3bk7_A | 607 | ABC transporter ATP-binding protein; ABC ATPase, i | 4e-14 | |
| 3bk7_A | 607 | ABC transporter ATP-binding protein; ABC ATPase, i | 3e-06 | |
| 3bk7_A | 607 | ABC transporter ATP-binding protein; ABC ATPase, i | 3e-06 | |
| 1yqt_A | 538 | RNAse L inhibitor; ATP-binding cassette, ribosome | 1e-16 | |
| 1yqt_A | 538 | RNAse L inhibitor; ATP-binding cassette, ribosome | 3e-11 | |
| 1yqt_A | 538 | RNAse L inhibitor; ATP-binding cassette, ribosome | 2e-06 | |
| 1yqt_A | 538 | RNAse L inhibitor; ATP-binding cassette, ribosome | 7e-06 | |
| 2iw3_A | 986 | Elongation factor 3A; acetylation, ATP-binding, pr | 3e-16 | |
| 2iw3_A | 986 | Elongation factor 3A; acetylation, ATP-binding, pr | 2e-07 | |
| 2iw3_A | 986 | Elongation factor 3A; acetylation, ATP-binding, pr | 2e-06 | |
| 2iw3_A | 986 | Elongation factor 3A; acetylation, ATP-binding, pr | 8e-04 | |
| 1sgw_A | 214 | Putative ABC transporter; structural genomics, P p | 4e-16 | |
| 1sgw_A | 214 | Putative ABC transporter; structural genomics, P p | 6e-16 | |
| 3ozx_A | 538 | RNAse L inhibitor; ATP binding cassette protein, h | 3e-15 | |
| 3ozx_A | 538 | RNAse L inhibitor; ATP binding cassette protein, h | 2e-13 | |
| 3ozx_A | 538 | RNAse L inhibitor; ATP binding cassette protein, h | 4e-08 | |
| 3ozx_A | 538 | RNAse L inhibitor; ATP binding cassette protein, h | 2e-05 | |
| 1z47_A | 355 | CYSA, putative ABC-transporter ATP-binding protein | 1e-14 | |
| 2onk_A | 240 | Molybdate/tungstate ABC transporter, ATP-binding p | 2e-14 | |
| 2onk_A | 240 | Molybdate/tungstate ABC transporter, ATP-binding p | 5e-05 | |
| 2qi9_C | 249 | Vitamin B12 import ATP-binding protein BTUD; inner | 4e-14 | |
| 2qi9_C | 249 | Vitamin B12 import ATP-binding protein BTUD; inner | 4e-10 | |
| 3tif_A | 235 | Uncharacterized ABC transporter ATP-binding prote; | 1e-13 | |
| 3d31_A | 348 | Sulfate/molybdate ABC transporter, ATP-binding pro | 2e-13 | |
| 3fvq_A | 359 | Fe(3+) IONS import ATP-binding protein FBPC; nucle | 2e-13 | |
| 1vpl_A | 256 | ABC transporter, ATP-binding protein; TM0544, stru | 4e-13 | |
| 1vpl_A | 256 | ABC transporter, ATP-binding protein; TM0544, stru | 2e-11 | |
| 2pcj_A | 224 | ABC transporter, lipoprotein-releasing system ATP- | 9e-13 | |
| 1oxx_K | 353 | GLCV, glucose, ABC transporter, ATP binding protei | 5e-12 | |
| 1vt4_I | 1221 | APAF-1 related killer DARK; drosophila apoptosome, | 6e-12 | |
| 1vt4_I | 1221 | APAF-1 related killer DARK; drosophila apoptosome, | 1e-08 | |
| 2it1_A | 362 | 362AA long hypothetical maltose/maltodextrin trans | 3e-10 | |
| 2olj_A | 263 | Amino acid ABC transporter; ABC domain, ATPase, hy | 8e-10 | |
| 2olj_A | 263 | Amino acid ABC transporter; ABC domain, ATPase, hy | 2e-05 | |
| 2yyz_A | 359 | Sugar ABC transporter, ATP-binding protein; sugar | 5e-09 | |
| 1v43_A | 372 | Sugar-binding transport ATP-binding protein; ATPas | 7e-09 | |
| 1g29_1 | 372 | MALK, maltose transport protein MALK; ATPase, acti | 1e-08 | |
| 3tui_C | 366 | Methionine import ATP-binding protein METN; ABC-tr | 4e-08 | |
| 3tui_C | 366 | Methionine import ATP-binding protein METN; ABC-tr | 8e-05 | |
| 1b0u_A | 262 | Histidine permease; ABC transporter, transport pro | 5e-08 | |
| 3rlf_A | 381 | Maltose/maltodextrin import ATP-binding protein M; | 3e-07 | |
| 1ji0_A | 240 | ABC transporter; ATP binding protein, structural g | 6e-07 | |
| 3qkt_A | 339 | DNA double-strand break repair RAD50 ATPase; RECA- | 5e-05 |
| >2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A* Length = 290 | Back alignment and structure |
|---|
Score = 378 bits (972), Expect = e-123
Identities = 96/286 (33%), Positives = 150/286 (52%), Gaps = 14/286 (4%)
Query: 324 QAKVPLDRIASFLCLEGLQTDVLEKMPRGNSDTAIEIIDG--SFSWDFSSPNPTLRNINL 381
+V ++ + +F E ++ EK + N++ D SFS P L++IN
Sbjct: 2 TTEVVMENVTAFW--EEGFGELFEKAKQNNNNRKTSNGDDSLSFSNFSLLGTPVLKDINF 59
Query: 382 KVFHGMRVAVCGTVGSGKSSCLSCILGGVPKESGIIRLCGTKAYVAQSPWIQSGKIEENI 441
K+ G +AV G+ G+GK+S L I+G + G I+ G ++ +Q+ WI G I+ENI
Sbjct: 60 KIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSGRISFCSQNSWIMPGTIKENI 119
Query: 442 LFGKEMDRERYERVLEACSLKKDLEVLPFGDQTIIGERGINLSGGQKQRIQIARPLYQDA 501
+ G D RY V++AC L++D+ D ++GE GI LSGGQ+ RI +AR +Y+DA
Sbjct: 120 I-GVSYDEYRYRSVIKACQLEEDISKFAEKDNIVLGEGGITLSGGQRARISLARAVYKDA 178
Query: 502 DIFLLDDPFSPVDDHTGAHLFKFCWVS--SSKTVIYATHQVEFLPAADLILVIKDGKITQ 559
D++LLD PF +D T +F+ C ++KT I T ++E L AD IL++ +G
Sbjct: 179 DLYLLDSPFGYLDVLTEKEIFESCVCKLMANKTRILVTSKMEHLKKADKILILHEGSSYF 238
Query: 560 AGKYSDILNSGTDFMELVGAHKQALSGLDSIDRGPVSERKSINKEN 605
G +S++ N DF + DS D+ R SI E
Sbjct: 239 YGTFSELQNLRPDFSSKLMGC-------DSFDQFSAERRNSILTET 277
|
| >2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A* Length = 290 | Back alignment and structure |
|---|
Score = 62.4 bits (152), Expect = 2e-10
Identities = 44/279 (15%), Positives = 98/279 (35%), Gaps = 55/279 (19%)
Query: 914 ISVERILQ--CACIPSEPALVIEATKPNNSRPSHGEVNIRHLQVRYAP---NLPLVLR-- 966
+ +E + + + ++ + + P ++ +
Sbjct: 5 VVMENVTAFWEEGFGELFEKAKQNNNNRKTSNGDDSLSFSNFSLLGTPVLKDINFKIERG 64
Query: 967 ------GRTGSGKSTLIQTLFRIVESTAGHILIDGKDISLIGLHDLRTRLSIIPQDPTMF 1020
G TG+GK++L+ + +E + G I G R+S Q+ +
Sbjct: 65 QLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSG-------------RISFCSQNSWIM 111
Query: 1021 EGTTRSNL--DPLEEHADEQIWEALDKCQL---------GD--EVRKKKGKLDSQG---R 1064
GT + N+ +E + + CQL D + + L S G R
Sbjct: 112 PGTIKENIIGVSYDE---YRYRSVIKACQLEEDISKFAEKDNIVLGEGGITL-SGGQRAR 167
Query: 1065 VLL-----KKSKVLVLDEATASVDTATDNQI-QQTLRQHFSDCTVVTIAHRITSVLDSA- 1117
+ L K + + +LD +D T+ +I + + + ++ T + + ++ L A
Sbjct: 168 ISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMANKTRILVTSKM-EHLKKAD 226
Query: 1118 MVLLLNHGLIKEYDSPTKLLENKSSSFAQLVAEYTSSSS 1156
+L+L+ G Y + ++L + F+ + S
Sbjct: 227 KILILHEGSSYFYGTFSELQNLR-PDFSSKLMGCDSFDQ 264
|
| >2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens} Length = 237 | Back alignment and structure |
|---|
Score = 376 bits (967), Expect = e-123
Identities = 100/228 (43%), Positives = 142/228 (62%), Gaps = 5/228 (2%)
Query: 357 AIEIIDGSFSWDFSSPNPTLRNINLKVFHGMRVAVCGTVGSGKSSCLSCILGGVPKESGI 416
+I + + +F+W S P PTL I + G VAV G VG GKSS LS +L + K G
Sbjct: 3 SITVRNATFTWARSDP-PTLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDKVEGH 61
Query: 417 IRLCGTKAYVAQSPWIQSGKIEENILFGKEMDRERYERVLEACSLKKDLEVLPFGDQTII 476
+ + G+ AYV Q WIQ+ + ENILFG +++ Y V++AC+L DLE+LP GD+T I
Sbjct: 62 VAIKGSVAYVPQQAWIQNDSLRENILFGCQLEEPYYRSVIQACALLPDLEILPSGDRTEI 121
Query: 477 GERGINLSGGQKQRIQIARPLYQDADIFLLDDPFSPVDDHTGAHLFKFCWVS----SSKT 532
GE+G+NLSGGQKQR+ +AR +Y +ADI+L DDP S VD H G H+F+ +KT
Sbjct: 122 GEKGVNLSGGQKQRVSLARAVYSNADIYLFDDPLSAVDAHVGKHIFENVIGPKGMLKNKT 181
Query: 533 VIYATHQVEFLPAADLILVIKDGKITQAGKYSDILNSGTDFMELVGAH 580
I TH + +LP D+I+V+ GKI++ G Y ++L F E + +
Sbjct: 182 RILVTHSMSYLPQVDVIIVMSGGKISEMGSYQELLARDGAFAEFLRTY 229
|
| >2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens} Length = 237 | Back alignment and structure |
|---|
Score = 57.9 bits (141), Expect = 3e-09
Identities = 53/259 (20%), Positives = 93/259 (35%), Gaps = 74/259 (28%)
Query: 946 GEVNIRHLQVRYAPNLPLVLR---------------GRTGSGKSTLIQTLFRIVESTAGH 990
+ +R+ +A + P L G+ G GKS+L+ L ++ GH
Sbjct: 2 NSITVRNATFTWARSDPPTLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDKVEGH 61
Query: 991 ILIDGKDISLIGLHDLRTRLSIIPQDPTMFEGTTRSNL---DPLEEHADEQIWEALDKCQ 1047
+ I G ++ +PQ + + R N+ LEE + C
Sbjct: 62 VAIKG-------------SVAYVPQQAWIQNDSLRENILFGCQLEE---PYYRSVIQACA 105
Query: 1048 L---------GD--EVRKKKGKLDSQG---RVLL-----KKSKVLVLDEATASVDTATDN 1088
L GD E+ +K L S G RV L + + + D+ ++VD
Sbjct: 106 LLPDLEILPSGDRTEIGEKGVNL-SGGQKQRVSLARAVYSNADIYLFDDPLSAVDAHVGK 164
Query: 1089 QIQQTLRQHFSDC----------TVVTIAHRITSVLDSA-MVLLLNHGLIKEYDSPTKLL 1137
I F + T + + H + S L ++++++ G I E S +LL
Sbjct: 165 HI-------FENVIGPKGMLKNKTRILVTHSM-SYLPQVDVIIVMSGGKISEMGSYQELL 216
Query: 1138 ENKSSSFAQLVAEYTSSSS 1156
+FA+ + Y S
Sbjct: 217 ARD-GAFAEFLRTYASHHH 234
|
| >2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A Length = 229 | Back alignment and structure |
|---|
Score = 369 bits (951), Expect = e-120
Identities = 82/225 (36%), Positives = 129/225 (57%), Gaps = 3/225 (1%)
Query: 354 SDTAIEIIDGSFSWDFSSPNPTLRNINLKVFHGMRVAVCGTVGSGKSSCLSCILGGVPKE 413
+ T + + + + W+ P L++IN K+ G +AV G+ G+GK+S L I+G +
Sbjct: 3 TTTEVVMENVTAFWEEGGT-PVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPS 61
Query: 414 SGIIRLCGTKAYVAQSPWIQSGKIEENILFGKEMDRERYERVLEACSLKKDLEVLPFGDQ 473
G I+ G ++ +Q WI G I+ENI+FG D RY V++AC L++D+ D
Sbjct: 62 EGKIKHSGRISFCSQFSWIMPGTIKENIIFGVSYDEYRYRSVIKACQLEEDISKFAEKDN 121
Query: 474 TIIGERGINLSGGQKQRIQIARPLYQDADIFLLDDPFSPVDDHTGAHLFKFCWVS--SSK 531
++GE GI LSGGQ+ RI +AR +Y+DAD++LLD PF +D T +F+ C ++K
Sbjct: 122 IVLGEGGITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMANK 181
Query: 532 TVIYATHQVEFLPAADLILVIKDGKITQAGKYSDILNSGTDFMEL 576
T I T ++E L AD IL++ +G G +S++ N DF
Sbjct: 182 TRILVTSKMEHLKKADKILILHEGSSYFYGTFSELQNLQPDFSSK 226
|
| >2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A Length = 229 | Back alignment and structure |
|---|
Score = 62.6 bits (153), Expect = 7e-11
Identities = 45/245 (18%), Positives = 93/245 (37%), Gaps = 57/245 (23%)
Query: 944 SHGEVNIRHLQVRYAPNLPLVLR---------------GRTGSGKSTLIQTLFRIVESTA 988
+ EV + ++ + VL+ G TG+GK++L+ + +E +
Sbjct: 3 TTTEVVMENVTAFWEEGGTPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSE 62
Query: 989 GHILIDGKDISLIGLHDLRTRLSIIPQDPTMFEGTTRSNL---DPLEEHADEQIWEALDK 1045
G I G R+S Q + GT + N+ +E + +
Sbjct: 63 GKIKHSG-------------RISFCSQFSWIMPGTIKENIIFGVSYDE---YRYRSVIKA 106
Query: 1046 CQL---------GD--EVRKKKGKLDSQG---RVLL-----KKSKVLVLDEATASVDTAT 1086
CQL D + + L S G R+ L K + + +LD +D T
Sbjct: 107 CQLEEDISKFAEKDNIVLGEGGITL-SGGQRARISLARAVYKDADLYLLDSPFGYLDVLT 165
Query: 1087 DNQI-QQTLRQHFSDCTVVTIAHRITSVLDSA-MVLLLNHGLIKEYDSPTKLLENKSSSF 1144
+ +I + + + ++ T + + ++ L A +L+L+ G Y + ++L +
Sbjct: 166 EKEIFESCVCKLMANKTRILVTSKM-EHLKKADKILILHEGSSYFYGTFSELQNLQPDFS 224
Query: 1145 AQLVA 1149
++L+
Sbjct: 225 SKLMG 229
|
| >3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens} Length = 390 | Back alignment and structure |
|---|
Score = 342 bits (878), Expect = e-108
Identities = 79/260 (30%), Positives = 123/260 (47%), Gaps = 36/260 (13%)
Query: 932 VIEAT--KPNNSRPSHGEVNIRHLQVRYAPNLPLVLR---------------GRTGSGKS 974
+IE + K ++ PS G++ ++ L +Y +L GRTGSGKS
Sbjct: 2 LIENSHVKKDDIWPSGGQMTVKDLTAKYTEGGNAILENISFSISPGQRVGLLGRTGSGKS 61
Query: 975 TLIQTLFRIVESTAGHILIDGKDISLIGLHDLRTRLSIIPQDPTMFEGTTRSNLDPLEEH 1034
TL+ R++ T G I IDG I L R +IPQ +F GT R NLDP H
Sbjct: 62 TLLSAFLRLLN-TEGEIQIDGVSWDSITLEQWRKAFGVIPQKVFIFSGTFRKNLDPNAAH 120
Query: 1035 ADEQIWEALDKCQLGDEVRKKKGKLDSQ------------------GRVLLKKSKVLVLD 1076
+D++IW+ D+ L + + GKLD R +L K+K+L+LD
Sbjct: 121 SDQEIWKVADEVGLRSVIEQFPGKLDFVLVDGGCVLSHGHKQLMCLARSVLSKAKILLLD 180
Query: 1077 EATASVDTATDNQIQQTLRQHFSDCTVVTIAHRITSVLDSAMVLLLNHGLIKEYDSPTKL 1136
E +A +D T I++TL+Q F+DCTV+ RI ++L+ L++ +++YDS +L
Sbjct: 181 EPSAHLDPVTYQIIRRTLKQAFADCTVILCEARIEAMLECDQFLVIEENKVRQYDSILEL 240
Query: 1137 LENKSSSFAQLVAEYTSSSS 1156
+ F +
Sbjct: 241 YHYPADRFVAGFIGSPKMNF 260
|
| >3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens} Length = 390 | Back alignment and structure |
|---|
Score = 107 bits (270), Expect = 4e-25
Identities = 59/312 (18%), Positives = 111/312 (35%), Gaps = 39/312 (12%)
Query: 357 AIEIIDGSFSWDFSSPNPTLRNINLKVFHGMRVAVCGTVGSGKSSCLSCILGGVPKESGI 416
+ + D + + L NI+ + G RV + G GSGKS+ LS L + E I
Sbjct: 19 QMTVKDLTAKYTEGGN-AILENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLNTEGEI 77
Query: 417 I----------------RLCGTKAYVAQSPWIQSGKIEENI-LFGKEMDRERYERVLEAC 459
+ Q +I SG +N+ D+E ++ V +
Sbjct: 78 QIDGVSWDSITLEQWRKAF----GVIPQKVFIFSGTFRKNLDPNAAHSDQEIWK-VADEV 132
Query: 460 SLKKDLEVLPFGDQTIIGERGINLSGGQKQRIQIARPLYQDADIFLLDDPFSPVDDHTGA 519
L+ +E P ++ + G LS G KQ + +AR + A I LLD+P + +D T
Sbjct: 133 GLRSVIEQFPGKLDFVLVDGGCVLSHGHKQLMCLARSVLSKAKILLLDEPSAHLDPVTYQ 192
Query: 520 HL-------FKFCWVSSSKTVIYATHQVEFLPAADLILVIKDGKITQAGKYSDIL-NSGT 571
+ F C TVI ++E + D LVI++ K+ Q ++
Sbjct: 193 IIRRTLKQAFADC------TVILCEARIEAMLECDQFLVIEENKVRQYDSILELYHYPAD 246
Query: 572 DFMELVGAHKQALSGLDSIDRGPVSERKSINKENDGTSTTNEIVNKEENKNFQSDDEAAL 631
F+ + + + + + + + + ++ +
Sbjct: 247 RFVAGFIGSPK--MNFLPVKVTATAIDQVQVELPMPNRQQVWLPVESRDVQVGANMSLGI 304
Query: 632 PKGQLVQEEERE 643
L+ + +
Sbjct: 305 RPEHLLPSDIAD 316
|
| >3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A* Length = 1284 | Back alignment and structure |
|---|
Score = 278 bits (712), Expect = 2e-77
Identities = 221/1159 (19%), Positives = 429/1159 (37%), Gaps = 212/1159 (18%)
Query: 165 NTSGEIINLIAVDAERALLILYKKLG--LASIATLLAT-----------AIVMLANFPL- 210
+ GE+ + D + + K+G ++AT +V+LA P+
Sbjct: 162 HDVGELNTRLTDDVSKINEGIGDKIGMFFQAMATFFGGFIIGFTRGWKLTLVILAISPVL 221
Query: 211 ---GRLREKFQDKFME-TKDRRIKATS---EILRNMRILKLQGWE----------LKKNE 253
+ K F + KA + E+L +R + G + L++ +
Sbjct: 222 GLSAGIWAKILSSFTDKELHAYAKAGAVAEEVLAAIRTVIAFGGQKKELERYNNNLEEAK 281
Query: 254 TAWLKKSVYTEAMISF------------FCWGAPTFVS--------VVTFGSCILLGIPL 293
+KK++ + F +G +S + F S ++ +
Sbjct: 282 RLGIKKAITANISMGAAFLLIYASYALAFWYGTSLVISKEYSIGQVLTVFFSVLIGAFSV 341
Query: 294 ESGMILSALTTFKILQEPIYYLPESISMMIQAKVPLDRIASFLCLEGLQTDVLEKMPRGN 353
G + F + Y + +I K +D + G + D ++ GN
Sbjct: 342 --GQASPNIEAFANARGAAY----EVFKIIDNKPSIDSFSK----SGHKPDNIQ----GN 387
Query: 354 SDTAIEIIDGSFSWDFSSPN-PTLRNINLKVFHGMRVAVCGTVGSGKSSCLSCILGGVPK 412
+E + FS+ S L+ +NLKV G VA+ G G GKS+ + +
Sbjct: 388 ----LEFKNIHFSYP-SRKEVQILKGLNLKVKSGQTVALVGNSGCGKSTTVQLMQRLYDP 442
Query: 413 ESGIIRLCGTK-------------AYVAQSPWIQSGKIEENILFGKEMDRERYERVLEAC 459
G++ + G V+Q P + + I ENI +G+E + + +A
Sbjct: 443 LDGMVSIDGQDIRTINVRYLREIIGVVSQEPVLFATTIAENIRYGREDVTM--DEIEKAV 500
Query: 460 SL---KKDLEVLPFGDQTIIGERGINLSGGQKQRIQIARPLYQDADIFLLDDPFSPVDDH 516
+ LP T++GERG LSGGQKQRI IAR L ++ I LLD+ S +D
Sbjct: 501 KEANAYDFIMKLPHQFDTLVGERGAQLSGGQKQRIAIARALVRNPKILLLDEATSALDTE 560
Query: 517 TGAHLFK-FCWVSSSKTVIYATHQVEFLPAADLILVIKDGKITQAGKYSDILNSGTDFME 575
+ A + +T I H++ + AD+I G I + G + +++ + +
Sbjct: 561 SEAVVQAALDKAREGRTTIVIAHRLSTVRNADVIAGFDGGVIVEQGNHDELMREKGIYFK 620
Query: 576 LVGAHKQALSGLDSIDRGPVSERKSINKENDGTSTTNEIVNKEENKNFQSDDEAALPKGQ 635
LV + + + S ++ I + K+ +
Sbjct: 621 LVMTQTAGNEIELGNEACKSKDEIDNLDMSSKDSGSSLIRRRSTRKSICGPHDQDRKLST 680
Query: 636 LVQEEEREKGKVGFSVY------WKYMT-----TAYGGVLVPF--ILLAQIIFQIFQIGS 682
+E + + W Y G L P ++ ++++ G
Sbjct: 681 KEALDEDVPPASFWRILKLNSTEWPYFVVGIFCAIINGGLQPAFSVIFSKVVGVFTNGGP 740
Query: 683 NYWMAWATPVAKDVNPAVGASTLIIVYVG------AGYKTATQLFNKMHVCIFRAPMYFF 736
+ + + +G + I ++ AG +L + + R + +F
Sbjct: 741 PETQRQNSNLFSLLFLILGIISFITFFLQGFTFGKAGEILTKRLRYMVFKSMLRQDVSWF 800
Query: 737 DST--PSGRILNRVSENVKWADQSAADMDIPYDIGAFAFSMIQLLGIIVVMSLV-AWQ-- 791
D +G + R++ + + A + A F I LG +++SL+ WQ
Sbjct: 801 DDPKNTTGALTTRLANDAA-QVKGATGSRL-----AVIFQNIANLGTGIIISLIYGWQLT 854
Query: 792 -VLIVFVPVIATFIWYQQYYITSTRELSRLIGVCKAPVIQQFSETISGSTTIRSLDQELR 850
+L+ VP+IA + ++ + + +E I T+ SL +E +
Sbjct: 855 LLLLAIVPIIAIAGVVEMKMLSG---QALKDKKELEGSGKIATEAIENFRTVVSLTREQK 911
Query: 851 FRDTNMKLIDEYSRPKFHIAGAMEWLRFCIDMLSSITFAFSLAFLIS------------V 898
F + + R A + ITF+F+ A + V
Sbjct: 912 FETMYAQSLQIPYRNAMKKA-----------HVFGITFSFTQAMMYFSYAAAFRFGAYLV 960
Query: 899 PNGIIHPYK-----------------------NLERKIISVERILQCACIPSEPALVIEA 935
++ + + +S I++ I P + +
Sbjct: 961 TQQLMTFENVLLVFSAIVFGAMAVGQVSSFAPDYAKATVSASHIIRI--IEKTPEIDSYS 1018
Query: 936 TKPNNSRPSHGEVNIRHLQVRY--APNLPLVLR---------------GRTGSGKSTLIQ 978
T+ G V + Y P++P VL+ G +G GKST++Q
Sbjct: 1019 TQGLKPNMLEGNVQFSGVVFNYPTRPSIP-VLQGLSLEVKKGQTLALVGSSGCGKSTVVQ 1077
Query: 979 TLFRIVESTAGHILIDGKDISLIGLHDLRTRLSIIPQDPTMFEGTTRSNL---DPLEEHA 1035
L R + AG + +DGK+I + + LR +L I+ Q+P +F+ + N+ D +
Sbjct: 1078 LLERFYDPMAGSVFLDGKEIKQLNVQWLRAQLGIVSQEPILFDCSIAENIAYGDNSRVVS 1137
Query: 1036 DEQIWEALDKCQLGDEVRK----------KKGKLDSQG--------RVLLKKSKVLVLDE 1077
E+I A + + + KG S G R L+++ +L+LDE
Sbjct: 1138 YEEIVRAAKEANIHQFIDSLPDKYNTRVGDKGTQLSGGQKQRIAIARALVRQPHILLLDE 1197
Query: 1078 ATASVDTATDNQIQQTLRQHFSDCTVVTIAHRITSVLDSAMVLLLNHGLIKEYDSPTKLL 1137
AT+++DT ++ +Q+ L + T + IAHR++++ ++ +++++ +G +KE+ + +LL
Sbjct: 1198 ATSALDTESEKVVQEALDKAREGRTCIVIAHRLSTIQNADLIVVIQNGKVKEHGTHQQLL 1257
Query: 1138 ENKSSSFAQLVAEYTSSSS 1156
K + +V+ +
Sbjct: 1258 AQK-GIYFSMVSVQAGAKR 1275
|
| >3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A* Length = 1284 | Back alignment and structure |
|---|
Score = 152 bits (386), Expect = 2e-37
Identities = 107/636 (16%), Positives = 234/636 (36%), Gaps = 116/636 (18%)
Query: 615 VNKEENKNFQSDDEAALPKGQLVQEEEREKGKVGFSVYWKYMTT-------------AYG 661
+ EE+ ++D + + +E++ +K V ++Y
Sbjct: 1 MELEEDLKGRADKNFSKMGKKSKKEKKEKKPAVSVLTMFRYAGWLDRLYMLVGTLAAIIH 60
Query: 662 GVLVPF--ILLAQII------FQIFQIGSNYWMAWATPVAKDVNPAVGASTLIIVYVG-- 711
GV +P ++ + + + +N A + + + +G
Sbjct: 61 GVALPLMMLIFGDMTDSFASVGNVSKNSTNMSEADKRAMFAKLEEEMTTYAYYYTGIGAG 120
Query: 712 --------------AGYKTATQLFNKMHVCIFRAPMYFFDSTPSGRILNRVSENVKWADQ 757
A + ++ K I + +FD G + R++++V ++
Sbjct: 121 VLIVAYIQVSFWCLAAGRQIHKIRQKFFHAIMNQEIGWFDVHDVGELNTRLTDDVSKINE 180
Query: 758 SAADMDIPYDIGAFAFSMIQLLGIIVVMSLVAWQ---VLIVFVPVIATFIWYQQYYITST 814
D IG F +M G ++ W+ V++ PV+ ++S
Sbjct: 181 GIGDK-----IGMFFQAMATFFGGFIIGFTRGWKLTLVILAISPVLGLSAGIWAKILSS- 234
Query: 815 RELSRLIGVCKAPVIQQFSETISGSTTIRSLDQELRFRDTNMKLIDEYSRPKFHIA---- 870
+ A E ++ T+ + + + + ++E R A
Sbjct: 235 --FTDKELHAYAKAGAVAEEVLAAIRTVIAFGGQKKELERYNNNLEEAKRLGIKKAITAN 292
Query: 871 ---GAMEWLRFC-----------------IDMLSSITFAFSLAFLISVPNGIIHPYKNLE 910
GA L + + +T FS+ +
Sbjct: 293 ISMGAAFLLIYASYALAFWYGTSLVISKEYSIGQVLTVFFSVLIGAFSVGQASPNIEAFA 352
Query: 911 RKIISVERILQCACIPSEPALVIEATKPNNSRPSH--GEVNIRHLQVRYAPNLP--LVLR 966
+ + + I ++P+ I++ + +P + G + +++ Y P+ +L+
Sbjct: 353 NARGAAYEVFK--IIDNKPS--IDSFSKSGHKPDNIQGNLEFKNIHFSY-PSRKEVQILK 407
Query: 967 ---------------GRTGSGKSTLIQTLFRIVESTAGHILIDGKDISLIGLHDLRTRLS 1011
G +G GKST +Q + R+ + G + IDG+DI I + LR +
Sbjct: 408 GLNLKVKSGQTVALVGNSGCGKSTTVQLMQRLYDPLDGMVSIDGQDIRTINVRYLREIIG 467
Query: 1012 IIPQDPTMFEGTTRSNLDP-LEEHADEQIWEALDKCQLGDEVRK----------KKGKLD 1060
++ Q+P +F T N+ E+ ++I +A+ + D + K ++G
Sbjct: 468 VVSQEPVLFATTIAENIRYGREDVTMDEIEKAVKEANAYDFIMKLPHQFDTLVGERGAQL 527
Query: 1061 SQG--------RVLLKKSKVLVLDEATASVDTATDNQIQQTLRQHFSDCTVVTIAHRITS 1112
S G R L++ K+L+LDEAT+++DT ++ +Q L + T + IAHR+++
Sbjct: 528 SGGQKQRIAIARALVRNPKILLLDEATSALDTESEAVVQAALDKAREGRTTIVIAHRLST 587
Query: 1113 VLDSAMVLLLNHGLIKEYDSPTKLLENKSSSFAQLV 1148
V ++ ++ + G+I E + +L+ + + +LV
Sbjct: 588 VRNADVIAGFDGGVIVEQGNHDELMR-EKGIYFKLV 622
|
| >3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A* Length = 1284 | Back alignment and structure |
|---|
Score = 142 bits (361), Expect = 2e-34
Identities = 104/519 (20%), Positives = 200/519 (38%), Gaps = 78/519 (15%)
Query: 130 HWFFQV--QQFGIRFRATLFAMIYNKGLTLSGQAKQGNTSGEIINLIAVDAERALLILYK 187
+ F + R R +F + + ++ K NT+G + +A DA +
Sbjct: 770 GFTFGKAGEILTKRLRYMVFKSMLRQDVSWFDDPK--NTTGALTTRLANDAAQVKGATGS 827
Query: 188 KLGLA--SIATLLAT-----------AIVMLANFPL----GRLREKFQDKF-METKDRRI 229
+L + +IA L +++LA P+ G + K ++ K
Sbjct: 828 RLAVIFQNIANLGTGIIISLIYGWQLTLLLLAIVPIIAIAGVVEMKMLSGQALKDKKELE 887
Query: 230 KAT---SEILRNMRI---LKLQGWELKK--NETAWLKKSVYTEAMISFFCWGAPTFVSVV 281
+ +E + N R L + ++ +A + + +
Sbjct: 888 GSGKIATEAIENFRTVVSLTREQKFETMYAQSLQIPYRNAMKKAHVFGITFSFTQAMMYF 947
Query: 282 TFGSCILLGIPL-ESGMI--------LSALT-TFKILQEPIYYLPESISMMIQAKVPLDR 331
++ + G L ++ SA+ + + + P+ +A V
Sbjct: 948 SYAAAFRFGAYLVTQQLMTFENVLLVFSAIVFGAMAVGQVSSFAPD----YAKATVSASH 1003
Query: 332 IASFLCLE-GLQTDVLEKMPRGNSDTAIEIIDGSFSWDFSSPN-PTLRNINLKVFHGMRV 389
I + + + + + + ++ F++ + P+ P L+ ++L+V G +
Sbjct: 1004 IIRIIEKTPEIDSYSTQGLKPNMLEGNVQFSGVVFNYP-TRPSIPVLQGLSLEVKKGQTL 1062
Query: 390 AVCGTVGSGKSSCLSCILGGVPKESGIIRLCGTK-------------AYVAQSPWIQSGK 436
A+ G+ G GKS+ + + +G + L G + V+Q P +
Sbjct: 1063 ALVGSSGCGKSTVVQLLERFYDPMAGSVFLDGKEIKQLNVQWLRAQLGIVSQEPILFDCS 1122
Query: 437 IEENILFGKEMDRERYERVLEACSLKKD------LEVLPFGDQTIIGERGINLSGGQKQR 490
I ENI +G YE ++ A K+ ++ LP T +G++G LSGGQKQR
Sbjct: 1123 IAENIAYGDNSRVVSYEEIVRAA---KEANIHQFIDSLPDKYNTRVGDKGTQLSGGQKQR 1179
Query: 491 IQIARPLYQDADIFLLDDPFSPVDDHTGAH----LFKFCWVSSSKTVIYATHQVEFLPAA 546
I IAR L + I LLD+ S +D + L K +T I H++ + A
Sbjct: 1180 IAIARALVRQPHILLLDEATSALDTESEKVVQEALDK---AREGRTCIVIAHRLSTIQNA 1236
Query: 547 DLILVIKDGKITQAGKYSDILNSGTDFMELVGAHKQALS 585
DLI+VI++GK+ + G + +L + +V QA +
Sbjct: 1237 DLIVVIQNGKVKEHGTHQQLLAQKGIYFSMV--SVQAGA 1273
|
| >3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A Length = 582 | Back alignment and structure |
|---|
Score = 188 bits (480), Expect = 9e-51
Identities = 111/546 (20%), Positives = 218/546 (39%), Gaps = 109/546 (19%)
Query: 663 VLVPFILLAQIIFQ-IFQIGSNYWMAWATPVAKDVNPAVGASTLIIVYVGAGYKTATQLF 721
+ +P +++ +I + I S+Y ++W V + +LF
Sbjct: 65 LWMPLVVIGLMILRGITSYISSYCISW-----------VSGKVV--------MTMRRRLF 105
Query: 722 NKMHVCIFRAPMYFFDSTPSGRILNRVSENVKWADQSAADMDIPYDIGAFAFSMIQLLGI 781
M P+ FFD +G +L+R++ + + S++ + ++G+
Sbjct: 106 GHMM----GMPVAFFDKQSTGTLLSRITYDSEQVASSSSGA-----LITVVREGASIIGL 156
Query: 782 IVVMSLVAWQ---VLIVFVPVIATFIWYQQYYITSTRELSRLIGVCKAPVIQQFSETISG 838
++M +WQ +L+V P+++ I + R +S+ + V + + G
Sbjct: 157 FIMMFYYSWQLSIILVVLAPIVSIAI---RVVSKRFRSISKNMQNTMGQVTTSAEQMLKG 213
Query: 839 STTIRSLDQE----LRFRDTNMKLIDEYSRPKFHIAGAMEWLRFCIDMLSSITFAFSL-- 892
+ + RF + ++ + A I +++S+ AF L
Sbjct: 214 HKEVLIFGGQEVETKRFDKVS----NKMRLQGMKMVSASSISDPIIQLIASLALAFVLYA 269
Query: 893 ----------------AFLISVPNGIIHPYKNL-------ERKIISVERILQCACIPSEP 929
S+ ++ P K+L +R + + + + I
Sbjct: 270 ASFPSVMDSLTAGTITVVFSSMIA-LMRPLKSLTNVNAQFQRGMAACQTLFA---ILDSE 325
Query: 930 ALVIEATKPNNSRPSHGEVNIRHLQVRYAPNLPLVLR---------------GRTGSGKS 974
E + + + G++ R++ Y LR GR+GSGKS
Sbjct: 326 QEKDEGKRVID--RATGDLEFRNVTFTYPGREVPALRNINLKIPAGKTVALVGRSGSGKS 383
Query: 975 TLIQTLFRIVESTAGHILIDGKDISLIGLHDLRTRLSIIPQDPTMFEGTTRSN--LDPLE 1032
T+ + R + GHIL+DG D+ L LR +++++ Q+ +F T +N E
Sbjct: 384 TIASLITRFYDIDEGHILMDGHDLREYTLASLRNQVALVSQNVHLFNDTVANNIAYARTE 443
Query: 1033 EHADEQIWEALDKCQLGDEVRKKKGKLD----------SQG--------RVLLKKSKVLV 1074
E++ EQI EA D + K LD S G R LL+ S +L+
Sbjct: 444 EYSREQIEEAARMAYAMDFINKMDNGLDTIIGENGVLLSGGQRQRIAIARALLRDSPILI 503
Query: 1075 LDEATASVDTATDNQIQQTLRQHFSDCTVVTIAHRITSVLDSAMVLLLNHGLIKEYDSPT 1134
LDEAT+++DT ++ IQ L + + T + IAHR++++ + ++++ G+I E + +
Sbjct: 504 LDEATSALDTESERAIQAALDELQKNRTSLVIAHRLSTIEQADEIVVVEDGIIVERGTHS 563
Query: 1135 KLLENK 1140
+LL
Sbjct: 564 ELLAQH 569
|
| >3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A Length = 582 | Back alignment and structure |
|---|
Score = 132 bits (334), Expect = 4e-32
Identities = 106/559 (18%), Positives = 214/559 (38%), Gaps = 81/559 (14%)
Query: 80 WQEILFIAILALLYTLATYVGPYLIDNFVQYLNGRQAFEYEGYVLCL-----SERHWFFQ 134
++ I +L + L+ + G+ ++ + R
Sbjct: 24 KAGLIVAGIALILNAASDTFMLSLLKPLLDDGFGKTDRSVLLWMPLVVIGLMILRGITSY 83
Query: 135 VQQF-----GIRFRATLFAMIYNKGLTLSGQAKQGNTSGEIINLIAVDAER-------AL 182
+ + + T+ ++ + + ++G +++ I D+E+ AL
Sbjct: 84 ISSYCISWVSGKVVMTMRRRLFGHMMGMPVAFFDKQSTGTLLSRITYDSEQVASSSSGAL 143
Query: 183 LILYKKLGLASIATLLATAIVMLAN----------------FPLGRLREKFQDKFMETKD 226
+ + + A+++ I+M + + ++F+ ++
Sbjct: 144 ITV-----VREGASIIGLFIMMFYYSWQLSIILVVLAPIVSIAIRVVSKRFRSISKNMQN 198
Query: 227 RRIKATS---EILRNMRILKL---QGWELKK-------NETAWLKKSVYTEA---MISFF 270
+ T+ ++L+ + + + Q E K+ +K + +I
Sbjct: 199 TMGQVTTSAEQMLKGHKEVLIFGGQEVETKRFDKVSNKMRLQGMKMVSASSISDPIIQLI 258
Query: 271 CWGAPTFVSVVTFGSCILLGIPLESGMILSALTTFKILQEPIYYLPESISMMIQAKVPLD 330
+ V+ S + L +G I ++ L P+ L + +
Sbjct: 259 --ASLALAFVLYAASFPSVMDSLTAGTITVVFSSMIALMRPLKSLTNVNAQFQRGMAACQ 316
Query: 331 RIASFLCLEGLQTDVLEKMPRGNSDTAIEIIDGSFSWDFSSPNPTLRNINLKVFHGMRVA 390
+ + L E + + + R D +E + +F++ P LRNINLK+ G VA
Sbjct: 317 TLFAILDSEQEKDEGKRVIDRATGD--LEFRNVTFTYP-GREVPALRNINLKIPAGKTVA 373
Query: 391 VCGTVGSGKSSCLSCILGGVPKESGIIRLCGTK-------------AYVAQSPWIQSGKI 437
+ G GSGKS+ S I + G I + G A V+Q+ + + +
Sbjct: 374 LVGRSGSGKSTIASLITRFYDIDEGHILMDGHDLREYTLASLRNQVALVSQNVHLFNDTV 433
Query: 438 EENILFGK--EMDRERYERVLEACSLKKDLEVLPFGDQTIIGERGINLSGGQKQRIQIAR 495
NI + + E RE+ E + + G TIIGE G+ LSGGQ+QRI IAR
Sbjct: 434 ANNIAYARTEEYSREQIEEAARMAYAMDFINKMDNGLDTIIGENGVLLSGGQRQRIAIAR 493
Query: 496 PLYQDADIFLLDDPFSPVDDHTGAH----LFKFCWVSSSKTVIYATHQVEFLPAADLILV 551
L +D+ I +LD+ S +D + L + + ++T + H++ + AD I+V
Sbjct: 494 ALLRDSPILILDEATSALDTESERAIQAALDE---LQKNRTSLVIAHRLSTIEQADEIVV 550
Query: 552 IKDGKITQAGKYSDILNSG 570
++DG I + G +S++L
Sbjct: 551 VEDGIIVERGTHSELLAQH 569
|
| >3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae} Length = 582 | Back alignment and structure |
|---|
Score = 188 bits (479), Expect = 1e-50
Identities = 108/546 (19%), Positives = 209/546 (38%), Gaps = 109/546 (19%)
Query: 663 VLVPFILLAQIIFQ-IFQIGSNYWMAWATPVAKDVNPAVGASTLIIVYVGAGYKTATQLF 721
++PF++L + + + S+Y ++W V + + + +LF
Sbjct: 65 RILPFMILGLMFVRGLSGFASSYCLSW-----------VSGNVV--------MQMRRRLF 105
Query: 722 NKMHVCIFRAPMYFFDSTPSGRILNRVSENVKWADQSAADMDIPYDIGAFAFSMIQLLGI 781
N P+ FFD +G +L+R++ + + + + + + ++G+
Sbjct: 106 NHFM----HMPVRFFDQESTGGLLSRITYDSEQVAGATSRA-----LVSIVREGASIIGL 156
Query: 782 IVVMSLVAWQ---VLIVFVPVIATFIWYQQYYITSTRELSRLIGVCKAPVIQQFSETISG 838
+ +M +WQ VLIV PV+A I + R++SR + V + + G
Sbjct: 157 LTLMFWNSWQLSLVLIVVAPVVAFAI---SFVSKRFRKISRNMQTAMGHVTSSAEQMLKG 213
Query: 839 STTIRSLDQE----LRFRDTNMKLIDEYSRPKFHIAGAMEWLRFCIDMLSSITFAFSL-- 892
+ S + RF + + + + A I M++S+ L
Sbjct: 214 HKVVLSYGGQEVERKRFDKVS----NSMRQQTMKLVSAQSIADPVIQMIASLALFAVLFL 269
Query: 893 ----------------AFLISVPNGIIHPYKNL-------ERKIISVERILQCACIPSEP 929
++ ++ P K L +R + + + + +
Sbjct: 270 ASVDSIRAELTPGTFTVVFSAMFG-LMRPLKALTSVTSEFQRGMAACQTLFG---LMDLE 325
Query: 930 ALVIEATKPNNSRPSHGEVNIRHLQVRYAPNLPLVLR---------------GRTGSGKS 974
+GEV+++ + Y L GR+GSGKS
Sbjct: 326 TERDNGKYEAE--RVNGEVDVKDVTFTYQGKEKPALSHVSFSIPQGKTVALVGRSGSGKS 383
Query: 975 TLIQTLFRIVESTAGHILIDGKDISLIGLHDLRTRLSIIPQDPTMFEGTTRSN--LDPLE 1032
T+ R + +G I +DG D+ L +LR +++ Q+ +F T +N
Sbjct: 384 TIANLFTRFYDVDSGSICLDGHDVRDYKLTNLRRHFALVSQNVHLFNDTIANNIAYAAEG 443
Query: 1033 EHADEQIWEALDKCQLGDEVRKKKGKLD----------SQG--------RVLLKKSKVLV 1074
E+ EQI +A + + + LD S G R LL+ + VL+
Sbjct: 444 EYTREQIEQAARQAHAMEFIENMPQGLDTVIGENGTSLSGGQRQRVAIARALLRDAPVLI 503
Query: 1075 LDEATASVDTATDNQIQQTLRQHFSDCTVVTIAHRITSVLDSAMVLLLNHGLIKEYDSPT 1134
LDEAT+++DT ++ IQ L + + TV+ IAHR++++ + +L+++ G I E
Sbjct: 504 LDEATSALDTESERAIQAALDELQKNKTVLVIAHRLSTIEQADEILVVDEGEIIERGRHA 563
Query: 1135 KLLENK 1140
LL
Sbjct: 564 DLLAQD 569
|
| >3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae} Length = 582 | Back alignment and structure |
|---|
Score = 134 bits (339), Expect = 1e-32
Identities = 106/559 (18%), Positives = 216/559 (38%), Gaps = 81/559 (14%)
Query: 80 WQEILFIAILALLYTLATYVGPYLIDNFVQYLNGRQAFEYEGYVLCL-----SERHWFFQ 134
++ I ++ A L+ + G + + + R
Sbjct: 24 KAGLVVSTIALVINAAADTYMISLLKPLLDEGFGNAESNFLRILPFMILGLMFVRGLSGF 83
Query: 135 VQQFGIRF--RATLFAM---IYNKGLTLSGQAKQGNTSGEIINLIAVDAER-------AL 182
+ + + + M ++N + + + ++G +++ I D+E+ AL
Sbjct: 84 ASSYCLSWVSGNVVMQMRRRLFNHFMHMPVRFFDQESTGGLLSRITYDSEQVAGATSRAL 143
Query: 183 LILYKKLGLASIATLLATAIVMLAN----------------FPLGRLREKFQDKFMETKD 226
+ + + A+++ +M N F + + ++F+ +
Sbjct: 144 VSIVR-----EGASIIGLLTLMFWNSWQLSLVLIVVAPVVAFAISFVSKRFRKISRNMQT 198
Query: 227 RRIKATS---EILRNMRILKL---QGWELKK-------NETAWLKKSVYTEA---MISFF 270
TS ++L+ +++ Q E K+ +K +I
Sbjct: 199 AMGHVTSSAEQMLKGHKVVLSYGGQEVERKRFDKVSNSMRQQTMKLVSAQSIADPVIQMI 258
Query: 271 CWGAPTFVSVVTFGSCILLGIPLESGMILSALTTFKILQEPIYYLPESISMMIQAKVPLD 330
+ +V+ S + L G + L P+ L S +
Sbjct: 259 --ASLALFAVLFLASVDSIRAELTPGTFTVVFSAMFGLMRPLKALTSVTSEFQRGMAACQ 316
Query: 331 RIASFLCLEGLQTDVLEKMPRGNSDTAIEIIDGSFSWDFSSPNPTLRNINLKVFHGMRVA 390
+ + LE + + + R N + +++ D +F++ P L +++ + G VA
Sbjct: 317 TLFGLMDLETERDNGKYEAERVNGE--VDVKDVTFTYQ-GKEKPALSHVSFSIPQGKTVA 373
Query: 391 VCGTVGSGKSSCLSCILGGVPKESGIIRLCGTK-------------AYVAQSPWIQSGKI 437
+ G GSGKS+ + +SG I L G A V+Q+ + + I
Sbjct: 374 LVGRSGSGKSTIANLFTRFYDVDSGSICLDGHDVRDYKLTNLRRHFALVSQNVHLFNDTI 433
Query: 438 EENILFGKEMD--RERYERVLEACSLKKDLEVLPFGDQTIIGERGINLSGGQKQRIQIAR 495
NI + E + RE+ E+ + +E +P G T+IGE G +LSGGQ+QR+ IAR
Sbjct: 434 ANNIAYAAEGEYTREQIEQAARQAHAMEFIENMPQGLDTVIGENGTSLSGGQRQRVAIAR 493
Query: 496 PLYQDADIFLLDDPFSPVDDHTGAH----LFKFCWVSSSKTVIYATHQVEFLPAADLILV 551
L +DA + +LD+ S +D + L + + +KTV+ H++ + AD ILV
Sbjct: 494 ALLRDAPVLILDEATSALDTESERAIQAALDE---LQKNKTVLVIAHRLSTIEQADEILV 550
Query: 552 IKDGKITQAGKYSDILNSG 570
+ +G+I + G+++D+L
Sbjct: 551 VDEGEIIERGRHADLLAQD 569
|
| >4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A Length = 578 | Back alignment and structure |
|---|
Score = 177 bits (452), Expect = 3e-47
Identities = 96/546 (17%), Positives = 190/546 (34%), Gaps = 108/546 (19%)
Query: 663 VLVPFILLAQIIFQ-IFQIGSNYWMAWATPVAKDVNPAVGASTLIIVYVGAGYKTATQLF 721
+ + L +I + + Y W L Y +L+
Sbjct: 61 IAIGIALFIFVIVRPPIEFIRQYLAQW-----------TSNKIL--------YDIRKKLY 101
Query: 722 NKMHVCIFRAPMYFFDSTPSGRILNRVSENVKWADQSAADMDIPYDIGAFAFSMIQLLGI 781
N + F+ + G++++RV +V+ + I ++
Sbjct: 102 NHLQ----ALSARFYANNQVGQVISRVINDVEQTKDFILTG-----LMNIWLDCITIIIA 152
Query: 782 IVVMSLVAWQ---VLIVFVPVIATFIWYQQYYITSTRELSRLIGVCKAPVIQQFSETISG 838
+ +M + + + P ++ + R+L+R A V E + G
Sbjct: 153 LSIMFFLDVKLTLAALFIFPFYILTVYVFFGRL---RKLTRERSQALAEVQGFLHERVQG 209
Query: 839 STTIRSLDQE----LRFRDTNMKLIDEYSRPKFHIAGAMEWLRFCIDMLSSITFAFSLAF 894
+ ++S E F N + + I+ ++ I +
Sbjct: 210 ISVVKSFAIEDNEAKNFDKKN----TNFLTRALKHTRWNAYSFAAINTVTDIGPIIVIGV 265
Query: 895 -LISVPNGIIHP-----------------------YKNLERKIISVERILQCACIPSEPA 930
+G I + L + S++R+ Q + E
Sbjct: 266 GAYLAISGSITVGTLAAFVGYLELLFGPLRRLVASFTTLTQSFASMDRVFQ---LIDEDY 322
Query: 931 LVIEATKPNNSRPSHGEVNIRHLQVRYAPNLPLVLR---------------GRTGSGKST 975
+ G ++I H+ +Y N +L+ G +G GKST
Sbjct: 323 DIKNGVGAQPIEIKQGRIDIDHVSFQYNDNEAPILKDINLSIEKGETVAFVGMSGGGKST 382
Query: 976 LIQTLFRIVESTAGHILIDGKDISLIGLHDLRTRLSIIPQDPTMFEGTTRSNL---DPLE 1032
LI + R + T+G ILIDG +I LR ++ ++ QD +F T + N+ P
Sbjct: 383 LINLIPRFYDVTSGQILIDGHNIKDFLTGSLRNQIGLVQQDNILFSDTVKENILLGRP-- 440
Query: 1033 EHADEQIWEALDKCQLGDEVRKKKGKLD----------SQG--------RVLLKKSKVLV 1074
DE++ EA D + D S G R+ L +L+
Sbjct: 441 TATDEEVVEAAKMANAHDFIMNLPQGYDTEVGERGVKLSGGQKQRLSIARIFLNNPPILI 500
Query: 1075 LDEATASVDTATDNQIQQTLRQHFSDCTVVTIAHRITSVLDSAMVLLLNHGLIKEYDSPT 1134
LDEAT+++D +++ IQ+ L D T + +AHR++++ + ++++ +G I E +
Sbjct: 501 LDEATSALDLESESIIQEALDVLSKDRTTLIVAHRLSTITHADKIVVIENGHIVETGTHR 560
Query: 1135 KLLENK 1140
+L+ +
Sbjct: 561 ELIAKQ 566
|
| >4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A Length = 578 | Back alignment and structure |
|---|
Score = 124 bits (314), Expect = 1e-29
Identities = 108/561 (19%), Positives = 211/561 (37%), Gaps = 77/561 (13%)
Query: 80 WQEILFIAILALLYTLATYVGPYL----IDNFVQYLNGRQAFEYEGYVLCLSER------ 129
I I+ ++ + P L ID + + + +
Sbjct: 13 KYRIFATIIVGIIKFGIPMLIPLLIKYAIDGVINNHALTTDEKVHHLTIAIGIALFIFVI 72
Query: 130 -HWFFQ-VQQF-----GIRFRATLFAMIYNKGLTLSGQAKQGNTSGEIINLIAVDAERAL 182
+ ++Q+ + + +YN LS + N G++I+ + D E+
Sbjct: 73 VRPPIEFIRQYLAQWTSNKILYDIRKKLYNHLQALSARFYANNQVGQVISRVINDVEQTK 132
Query: 183 LILYKKLG--LASIATLLATAIVMLA-NFPL---------------GRLREKFQDKFMET 224
+ L T++ +M + L + + E
Sbjct: 133 DFILTGLMNIWLDCITIIIALSIMFFLDVKLTLAALFIFPFYILTVYVFFGRLRKLTRER 192
Query: 225 KDRRIKATS---EILRNMRILKL---QGWELKK----NE---TAWLKKSVYTEAM---IS 268
+ E ++ + ++K + E K N T LK + + I+
Sbjct: 193 SQALAEVQGFLHERVQGISVVKSFAIEDNEAKNFDKKNTNFLTRALKHTRWNAYSFAAIN 252
Query: 269 FFCWGAPTFVSVVTFGSCILLGIPLESGMILSALTTFKILQEPIYYLPESISMMIQAKVP 328
+ V+ G+ + + + G + + + ++L P+ L S + + Q+
Sbjct: 253 TV--TDIGPIIVIGVGAYLAISGSITVGTLAAFVGYLELLFGPLRRLVASFTTLTQSFAS 310
Query: 329 LDRIASFLCLEGLQTDVLEKMPRGNSDTAIEIIDGSFSWDFSSPNPTLRNINLKVFHGMR 388
+DR+ + + + + P I+I SF ++ + P L++INL + G
Sbjct: 311 MDRVFQLIDEDYDIKNGVGAQPIEIKQGRIDIDHVSFQYN-DNEAPILKDINLSIEKGET 369
Query: 389 VAVCGTVGSGKSSCLSCILGGVPK----ESGIIRLCGTK-------------AYVAQSPW 431
VA G G GKS+ ++ I P+ SG I + G V Q
Sbjct: 370 VAFVGMSGGGKSTLINLI----PRFYDVTSGQILIDGHNIKDFLTGSLRNQIGLVQQDNI 425
Query: 432 IQSGKIEENILFGK-EMDRERYERVLEACSLKKDLEVLPFGDQTIIGERGINLSGGQKQR 490
+ S ++ENIL G+ E + + + LP G T +GERG+ LSGGQKQR
Sbjct: 426 LFSDTVKENILLGRPTATDEEVVEAAKMANAHDFIMNLPQGYDTEVGERGVKLSGGQKQR 485
Query: 491 IQIARPLYQDADIFLLDDPFSPVDDHTGAHLFK-FCWVSSSKTVIYATHQVEFLPAADLI 549
+ IAR + I +LD+ S +D + + + + +S +T + H++ + AD I
Sbjct: 486 LSIARIFLNNPPILILDEATSALDLESESIIQEALDVLSKDRTTLIVAHRLSTITHADKI 545
Query: 550 LVIKDGKITQAGKYSDILNSG 570
+VI++G I + G + +++
Sbjct: 546 VVIENGHIVETGTHRELIAKQ 566
|
| >3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima} Length = 598 | Back alignment and structure |
|---|
Score = 160 bits (407), Expect = 3e-41
Identities = 129/602 (21%), Positives = 226/602 (37%), Gaps = 137/602 (22%)
Query: 653 WKYMTTAYGGVLVPFILLAQIIFQIFQIGSNYWMAWAT---PVAKDVNPAVGAS-TLIIV 708
Y+ + L+ + + I + S Y + V + + L +
Sbjct: 29 LGYLR-PHTFTLIMVFVFV-TVSSILGVLSPYLIGKTIDVVFVPRRFDLLPRYMLILGTI 86
Query: 709 YVGA--------------GYKTA----TQLFNKMHVCIFRAPMYFFDSTPSGRILNRVSE 750
Y +LF K+ R P+ FFD TP G I++RV
Sbjct: 87 YALTSLLFWLQGKIMLTLSQDVVFRLRKELFEKLQ----RVPVGFFDRTPHGDIISRVI- 141
Query: 751 NVKWADQSAADMD-----IPYDIGAFAFSMIQLLGIIVVMSLVAWQ---VLIVFVPVIAT 802
D+D + I F ++ L G +++M V V + VP+
Sbjct: 142 ---------NDVDNINNVLGNSIIQFFSGIVTLAGAVIMMFRVNVILSLVTLSIVPLTVL 192
Query: 803 FIWY-----QQYYITSTRELSRLIGVCKAPVIQQFSETISGSTTIRSLDQE----LRFRD 853
++Y+ + R L +L G E ISG T I+ +E +F
Sbjct: 193 ITQIVSSQTRKYFYENQRVLGQLNG--------IIEEDISGLTVIKLFTREEKEMEKFDR 244
Query: 854 TNMKLIDEYSRPKFHIAGAMEWLRFCIDMLSSITFAFSLAFL--ISVPNGII-------- 903
N L ++ + +G + L ++M++++ FA ++ II
Sbjct: 245 VNESLRKVGTKAQI-FSGVLPPL---MNMVNNLGFAL-ISGFGGWLALKDIITVGTIATF 299
Query: 904 --------HP-------YKNLERKIISVERILQCACIPSEPALVIEATKPNNSRPSHGEV 948
P + ++ + S ERI + + E + R GE+
Sbjct: 300 IGYSRQFTRPLNELSNQFNMIQMALASAERIFEILDLEEEK----DDPDAVELREVRGEI 355
Query: 949 NIRHLQVRYAPNLPLV--------------LRGRTGSGKSTLIQTLFRIVESTAGHILID 994
+++ Y P++ L G TGSGK+T++ L R + G IL+D
Sbjct: 356 EFKNVWFSYDKKKPVLKDITFHIKPGQKVALVGPTGSGKTTIVNLLMRFYDVDRGQILVD 415
Query: 995 GKDISLIGLHDLRTRLSIIPQDPTMFEGTTRSNLDPLEEHA-DEQIWEALDKCQLGDEVR 1053
G DI I LR+ + I+ QD +F T + NL A DE+I EA ++
Sbjct: 416 GIDIRKIKRSSLRSSIGIVLQDTILFSTTVKENLKYGNPGATDEEIKEAAKLTHSDHFIK 475
Query: 1054 KKKGKLD----------SQG--------RVLLKKSKVLVLDEATASVDTATDNQIQQTLR 1095
+ SQG R L K+L+LDEAT++VDT T+ IQ +
Sbjct: 476 HLPEGYETVLTDNGEDLSQGQRQLLAITRAFLANPKILILDEATSNVDTKTEKSIQAAMW 535
Query: 1096 QHFSDCTVVTIAHRITSVLDSAMVLLLNHGLIKEYDSPTKLLENK-------SSSFAQLV 1148
+ T + IAHR+ ++ ++ ++++L G I E +L++ + +S + +V
Sbjct: 536 KLMEGKTSIIIAHRLNTIKNADLIIVLRDGEIVEMGKHDELIQKRGFYYELFTSQYGLVV 595
Query: 1149 AE 1150
+
Sbjct: 596 EK 597
|
| >3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima} Length = 598 | Back alignment and structure |
|---|
Score = 91.9 bits (229), Expect = 4e-19
Identities = 113/582 (19%), Positives = 208/582 (35%), Gaps = 95/582 (16%)
Query: 67 TALRLAKVLFFSAWQEILFIAILALLYTLATYVGPYL----IDNFVQYLNGRQAFEYEGY 122
T RL L + ++ + + + ++ + PYL ID Y
Sbjct: 24 TLRRLLGYLRPHTFT-LIMVFVFVTVSSILGVLSPYLIGKTIDVVFVPRRFDLLPRYMLI 82
Query: 123 VLCLSERHWFFQ----------VQQFGIRFRATLFAMIYNKGLTLSGQAKQGNTSGEIIN 172
+ + Q R R LF + + + + + G+II+
Sbjct: 83 LGTIYALTSLLFWLQGKIMLTLSQDVVFRLRKELFEKL-QR-VPVGFFDR--TPHGDIIS 138
Query: 173 LIAVDAE---RALLILYKKLGLASIATLLATAIVMLA-NFPL---------------GRL 213
+ D + L + + I TL I+M N L +
Sbjct: 139 RVINDVDNINNVLGNSIIQF-FSGIVTLAGAVIMMFRVNVILSLVTLSIVPLTVLITQIV 197
Query: 214 REKFQDKFMETKDRRIKATS---EILRNMRILKLQGWE-------LKKNE---TAWLKKS 260
+ + F E + + E + + ++KL E + NE K
Sbjct: 198 SSQTRKYFYENQRVLGQLNGIIEEDISGLTVIKLFTREEKEMEKFDRVNESLRKVGTKAQ 257
Query: 261 VYTEAM---ISFFCWGAPTFVSVVTFGSCILLGIPLESGMILSALTTFKILQEPIYYLPE 317
+++ + ++ F + FG + L + G I + + + P+ L
Sbjct: 258 IFSGVLPPLMNMV--NNLGFALISGFGGWLALKDIITVGTIATFIGYSRQFTRPLNELSN 315
Query: 318 SISMMIQAKVPLDRIASFLCLEGLQTDVLEKMPRGNSDTAIEIIDGSFSWDFSSPNPTLR 377
+M+ A +RI L + D + + IE + FS+D P L+
Sbjct: 316 QFNMIQMALASAERIFEILD-LEEEKDDPDAVELREVRGEIEFKNVWFSYD--KKKPVLK 372
Query: 378 NINLKVFHGMRVAVCGTVGSGKSSCLSCILGGVPKESGIIRLCGTK-------------A 424
+I + G +VA+ G GSGK++ ++ ++ + G I + G
Sbjct: 373 DITFHIKPGQKVALVGPTGSGKTTIVNLLMRFYDVDRGQILVDGIDIRKIKRSSLRSSIG 432
Query: 425 YVAQSPWIQSGKIEENILFGKEMDRERYERVLEACSLKKDLEV------LPFGDQTIIGE 478
V Q + S ++EN+ +G E + EA K LP G +T++ +
Sbjct: 433 IVLQDTILFSTTVKENLKYGNP-GATD-EEIKEAA---KLTHSDHFIKHLPEGYETVLTD 487
Query: 479 RGINLSGGQKQRIQIARPLYQDADIFLLDDPFSPVDDHTGAHLFK-FCWVSSSKTVIYAT 537
G +LS GQ+Q + I R + I +LD+ S VD T + + KT I
Sbjct: 488 NGEDLSQGQRQLLAITRAFLANPKILILDEATSNVDTKTEKSIQAAMWKLMEGKTSIIIA 547
Query: 538 HQVEFLPAADLILVIKDGKI----------TQAGKYSDILNS 569
H++ + ADLI+V++DG+I + G Y ++ S
Sbjct: 548 HRLNTIKNADLIIVLRDGEIVEMGKHDELIQKRGFYYELFTS 589
|
| >3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima} Length = 587 | Back alignment and structure |
|---|
Score = 155 bits (394), Expect = 1e-39
Identities = 77/263 (29%), Positives = 126/263 (47%), Gaps = 37/263 (14%)
Query: 911 RKIISVERILQCACIPSEPALVIEATKPNNSRPSHGEVNIRHLQVRYAPNLPLVLR---- 966
R S +R+L+ + +E + EA G V+ +++ RY N VL
Sbjct: 308 RASASAKRVLE---VLNEKPAIEEADNALALPNVEGSVSFENVEFRYFENTDPVLSGVNF 364
Query: 967 -----------GRTGSGKSTLIQTLFRIVESTAGHILIDGKDISLIGLHDLRTRLSIIPQ 1015
G TGSGKSTL+ + R+++ G + +D D+ + L DLR +S +PQ
Sbjct: 365 SVKPGSLVAVLGETGSGKSTLMNLIPRLIDPERGRVEVDELDVRTVKLKDLRGHISAVPQ 424
Query: 1016 DPTMFEGTTRSNLDPLEEHA-DEQIWEALDKCQLGDEVRKKKGKLDS---QG-------- 1063
+ +F GT + NL E A D++I EA Q+ D + DS +G
Sbjct: 425 ETVLFSGTIKENLKWGREDATDDEIVEAAKIAQIHDFIISLPEGYDSRVERGGRNFSGGQ 484
Query: 1064 -------RVLLKKSKVLVLDEATASVDTATDNQIQQTLRQHFSDCTVVTIAHRITSVLDS 1116
R L+KK KVL+LD+ T+SVD T+ +I L+++ CT I +I + L +
Sbjct: 485 KQRLSIARALVKKPKVLILDDCTSSVDPITEKRILDGLKRYTKGCTTFIITQKIPTALLA 544
Query: 1117 AMVLLLNHGLIKEYDSPTKLLEN 1139
+L+L+ G + + + +LLE+
Sbjct: 545 DKILVLHEGKVAGFGTHKELLEH 567
|
| >3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima} Length = 587 | Back alignment and structure |
|---|
Score = 126 bits (318), Expect = 4e-30
Identities = 93/438 (21%), Positives = 176/438 (40%), Gaps = 59/438 (13%)
Query: 168 GEIINLIAVDAERALLILYKKLGLASIATLLATAIVMLANFPLGRLREKFQDKFMETKDR 227
G I+ ++++ + + +++ +L + PL R K Q+ D
Sbjct: 153 GGIVMAVSINVKLSSVLI-----FLIPPIVLLFVWLTKKGNPLFR---KIQEST----DE 200
Query: 228 RIKATSEILRNMRILKL---QGWELKKNETA---WLKKSVYTEAMISFFCWGAPTF---- 277
+ E L +R+++ + +E + A + + ++I F P F
Sbjct: 201 VNRVVRENLLGVRVVRAFRREEYENENFRKANESLRRSIISAFSLIVFA---LPLFIFIV 257
Query: 278 ----VSVVTFGSCILLGIPLESGMILSALT-TFKILQEPIYYLPESISMMI----QAKVP 328
++V+ FG ++ +E G I++ +I+ + I ++ +A
Sbjct: 258 NMGMIAVLWFGGVLVRNNQMEIGSIMAYTNYLMQIMFSLMM-----IGNILNFIVRASAS 312
Query: 329 LDRIASFLCLEGLQTDVLEKMPRGNSDTAIEIIDGSFSWDFSSPNPTLRNINLKVFHGMR 388
R+ L + + + N + ++ + F + + +P L +N V G
Sbjct: 313 AKRVLEVLNEKPAIEEADNALALPNVEGSVSFENVEFRYF-ENTDPVLSGVNFSVKPGSL 371
Query: 389 VAVCGTVGSGKSSCLSCI------------LGGVP-KESGIIRLCGTKAYVAQSPWIQSG 435
VAV G GSGKS+ ++ I + + + + L G + V Q + SG
Sbjct: 372 VAVLGETGSGKSTLMNLIPRLIDPERGRVEVDELDVRTVKLKDLRGHISAVPQETVLFSG 431
Query: 436 KIEENILFGKE-MDRERYERVLE-ACSLKKD-LEVLPFGDQTIIGERGINLSGGQKQRIQ 492
I+EN+ +G+E + + A D + LP G + + G N SGGQKQR+
Sbjct: 432 TIKENLKWGREDATDDEIVEAAKIAQI--HDFIISLPEGYDSRVERGGRNFSGGQKQRLS 489
Query: 493 IARPLYQDADIFLLDDPFSPVDDHTGAHLFK-FCWVSSSKTVIYATHQVEFLPAADLILV 551
IAR L + + +LDD S VD T + + T T ++ AD ILV
Sbjct: 490 IARALVKKPKVLILDDCTSSVDPITEKRILDGLKRYTKGCTTFIITQKIPTALLADKILV 549
Query: 552 IKDGKITQAGKYSDILNS 569
+ +GK+ G + ++L
Sbjct: 550 LHEGKVAGFGTHKELLEH 567
|
| >3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A* Length = 306 | Back alignment and structure |
|---|
Score = 139 bits (352), Expect = 2e-36
Identities = 63/269 (23%), Positives = 117/269 (43%), Gaps = 38/269 (14%)
Query: 906 YKNLERKIISVERILQCACIPSEPALVIEATKPNNSRPSHGEVNIRHLQVRYAPNLPLVL 965
I +E + + E V + R G + ++ YA L
Sbjct: 15 VPRGSHMFIDMENMFD---LLKEETEVKDLPGAGPLRFQKGRIEFENVHFSYADGRE-TL 70
Query: 966 R---------------GRTGSGKSTLIQTLFRIVESTAGHILIDGKDISLIGLHDLRTRL 1010
+ G +G+GKST+++ LFR + ++G I IDG+DIS + LR+ +
Sbjct: 71 QDVSFTVMPGQTLALVGPSGAGKSTILRLLFRFYDISSGCIRIDGQDISQVTQASLRSHI 130
Query: 1011 SIIPQDPTMFEGTTRSNLDPLEEHA-DEQIWEALDKCQLGDEVRKKKGKLD--------- 1060
++PQD +F T N+ A ++++ A + D +
Sbjct: 131 GVVPQDTVLFNDTIADNIRYGRVTAGNDEVEAAAQAAGIHDAIMAFPEGYRTQVGERGLK 190
Query: 1061 -SQG--------RVLLKKSKVLVLDEATASVDTATDNQIQQTLRQHFSDCTVVTIAHRIT 1111
S G R +LK +++LDEAT+++DT+ + IQ +L + ++ T + +AHR++
Sbjct: 191 LSGGEKQRVAIARTILKAPGIILLDEATSALDTSNERAIQASLAKVCANRTTIVVAHRLS 250
Query: 1112 SVLDSAMVLLLNHGLIKEYDSPTKLLENK 1140
+V+++ +L++ G I E LL
Sbjct: 251 TVVNADQILVIKDGCIVERGRHEALLSRG 279
|
| >3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A* Length = 306 | Back alignment and structure |
|---|
Score = 122 bits (308), Expect = 1e-30
Identities = 72/280 (25%), Positives = 121/280 (43%), Gaps = 21/280 (7%)
Query: 308 LQEPIYYLPESISMMIQAKVPLDRIASFLCLEGLQTDVLEKMPRGNSDTAIEIIDGSFSW 367
++ + + ++ + L E D+ P IE + FS+
Sbjct: 4 SHHHHHHSSGLVPRGSHMFIDMENMFDLLKEETEVKDLPGAGPLRFQKGRIEFENVHFSY 63
Query: 368 DFSSPNPTLRNINLKVFHGMRVAVCGTVGSGKSSCLSCILGGVPKESGIIRLCGTK---- 423
TL++++ V G +A+ G G+GKS+ L + SG IR+ G
Sbjct: 64 A--DGRETLQDVSFTVMPGQTLALVGPSGAGKSTILRLLFRFYDISSGCIRIDGQDISQV 121
Query: 424 ---------AYVAQSPWIQSGKIEENILFGKEMDRERYERVLEAC---SLKKDLEVLPFG 471
V Q + + I +NI +G+ + V A + + P G
Sbjct: 122 TQASLRSHIGVVPQDTVLFNDTIADNIRYGRVTAGN--DEVEAAAQAAGIHDAIMAFPEG 179
Query: 472 DQTIIGERGINLSGGQKQRIQIARPLYQDADIFLLDDPFSPVDDHTGAHLFK-FCWVSSS 530
+T +GERG+ LSGG+KQR+ IAR + + I LLD+ S +D + V ++
Sbjct: 180 YRTQVGERGLKLSGGEKQRVAIARTILKAPGIILLDEATSALDTSNERAIQASLAKVCAN 239
Query: 531 KTVIYATHQVEFLPAADLILVIKDGKITQAGKYSDILNSG 570
+T I H++ + AD ILVIKDG I + G++ +L+ G
Sbjct: 240 RTTIVVAHRLSTVVNADQILVIKDGCIVERGRHEALLSRG 279
|
| >2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A* Length = 247 | Back alignment and structure |
|---|
Score = 133 bits (337), Expect = 5e-35
Identities = 60/239 (25%), Positives = 113/239 (47%), Gaps = 36/239 (15%)
Query: 945 HGEVNIRHLQVRYAPNLPLVLR---------------GRTGSGKSTLIQTLFRIVESTAG 989
H ++ R+++ RY P+ P++L GR+GSGKSTL + + R G
Sbjct: 5 HHDITFRNIRFRYKPDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENG 64
Query: 990 HILIDGKDISLIGLHDLRTRLSIIPQDPTMFEGTTRSNLDPLEEHA-DEQIWEALDK--- 1045
+LIDG D++L + LR ++ ++ QD + + N+ E++ A
Sbjct: 65 QVLIDGHDLALADPNWLRRQVGVVLQDNVLLNRSIIDNISLANPGMSVEKVIYAAKLAGA 124
Query: 1046 ----CQLGD----EVRKKKGKLDSQG--------RVLLKKSKVLVLDEATASVDTATDNQ 1089
+L + V ++ L S G R L+ K+L+ DEAT+++D +++
Sbjct: 125 HDFISELREGYNTIVGEQGAGL-SGGQRQRIAIARALVNNPKILIFDEATSALDYESEHV 183
Query: 1090 IQQTLRQHFSDCTVVTIAHRITSVLDSAMVLLLNHGLIKEYDSPTKLLENKSSSFAQLV 1148
I + + + TV+ IAHR+++V ++ ++++ G I E +LL S ++ L
Sbjct: 184 IMRNMHKICKGRTVIIIAHRLSTVKNADRIIVMEKGKIVEQGKHKELLSEPESLYSYLY 242
|
| >2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A* Length = 247 | Back alignment and structure |
|---|
Score = 114 bits (287), Expect = 2e-28
Identities = 65/230 (28%), Positives = 102/230 (44%), Gaps = 22/230 (9%)
Query: 357 AIEIIDGSFSWDFSSPNPTLRNINLKVFHGMRVAVCGTVGSGKSSCLSCILGGVPKESGI 416
I + F + SP L NINL + G + + G GSGKS+ I E+G
Sbjct: 7 DITFRNIRFRYKPDSP-VILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQ 65
Query: 417 IRLCGTK-------------AYVAQSPWIQSGKIEENILFGKE-MDRERYERVLEACSLK 462
+ + G V Q + + I +NI M E+ +
Sbjct: 66 VLIDGHDLALADPNWLRRQVGVVLQDNVLLNRSIIDNISLANPGMSVEKVIYAAKLAGAH 125
Query: 463 KDLEVLPFGDQTIIGERGINLSGGQKQRIQIARPLYQDADIFLLDDPFSPVDDHTGAH-- 520
+ L G TI+GE+G LSGGQ+QRI IAR L + I + D+ S +D +
Sbjct: 126 DFISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIM 185
Query: 521 --LFKFCWVSSSKTVIYATHQVEFLPAADLILVIKDGKITQAGKYSDILN 568
+ K + +TVI H++ + AD I+V++ GKI + GK+ ++L+
Sbjct: 186 RNMHK---ICKGRTVIIIAHRLSTVKNADRIIVMEKGKIVEQGKHKELLS 232
|
| >1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12 Length = 243 | Back alignment and structure |
|---|
Score = 129 bits (327), Expect = 9e-34
Identities = 60/203 (29%), Positives = 100/203 (49%), Gaps = 21/203 (10%)
Query: 967 GRTGSGKSTLIQTLFRIVESTAGHILIDGKDISLIGLHDLRTRLSIIPQDPTMFEGTTRS 1026
G +G GKST+ L R + TAG I IDG+ I I L + R+++ + QD + GT R
Sbjct: 35 GPSGGGKSTIFSLLERFYQPTAGEITIDGQPIDNISLENWRSQIGFVSQDSAIMAGTIRE 94
Query: 1027 NLD--PLEEHADEQIWEALDKCQLGDEVRKKKGKLD----------SQG--------RVL 1066
NL ++ DE +W+ LD V +L+ S G R
Sbjct: 95 NLTYGLEGDYTDEDLWQVLDLAFARSFVENMPDQLNTEVGERGVKISGGQRQRLAIARAF 154
Query: 1067 LKKSKVLVLDEATASVDTATDNQIQQTLRQHFSDCTVVTIAHRITSVLDSAMVLLLNHGL 1126
L+ K+L+LDEATAS+D+ +++ +Q+ L T + IAHR+++++D+ + + G
Sbjct: 155 LRNPKILMLDEATASLDSESESMVQKALDSLMKGRTTLVIAHRLSTIVDADKIYFIEKGQ 214
Query: 1127 IKEYDSPTKLLENKSSSFAQLVA 1149
I +L+ +A+ V+
Sbjct: 215 ITGSGKHNELVA-THPLYAKYVS 236
|
| >1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12 Length = 243 | Back alignment and structure |
|---|
Score = 118 bits (299), Expect = 5e-30
Identities = 60/236 (25%), Positives = 110/236 (46%), Gaps = 32/236 (13%)
Query: 358 IEIIDGSFSWDFSSPNPTLRNINLKVFHGMRVAVCGTVGSGKSSCLSCILGGVPK----E 413
+ F++D LR+I+ + +A G G GKS+ S + +
Sbjct: 2 LSARHVDFAYD--DSEQILRDISFEAQPNSIIAFAGPSGGGKSTIFSLL----ERFYQPT 55
Query: 414 SGIIRLCGTK-------------AYVAQSPWIQSGKIEENILFGKEMD--RERYERVLEA 458
+G I + G +V+Q I +G I EN+ +G E D E +VL+
Sbjct: 56 AGEITIDGQPIDNISLENWRSQIGFVSQDSAIMAGTIRENLTYGLEGDYTDEDLWQVLDL 115
Query: 459 CSLKKDLEVLPFGDQTIIGERGINLSGGQKQRIQIARPLYQDADIFLLDDPFSPVDDHTG 518
+ +E +P T +GERG+ +SGGQ+QR+ IAR ++ I +LD+ + +D +
Sbjct: 116 AFARSFVENMPDQLNTEVGERGVKISGGQRQRLAIARAFLRNPKILMLDEATASLDSESE 175
Query: 519 AH----LFKFCWVSSSKTVIYATHQVEFLPAADLILVIKDGKITQAGKYSDILNSG 570
+ L + +T + H++ + AD I I+ G+IT +GK+++++ +
Sbjct: 176 SMVQKALDS---LMKGRTTLVIAHRLSTIVDADKIYFIEKGQITGSGKHNELVATH 228
|
| >2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str} Length = 260 | Back alignment and structure |
|---|
Score = 124 bits (315), Expect = 5e-32
Identities = 58/193 (30%), Positives = 101/193 (52%), Gaps = 20/193 (10%)
Query: 967 GRTGSGKSTLIQTLFRIVESTAGHILIDGKDISLIGLHDLRTRLSIIPQDPTMFEGTTRS 1026
G TGSGKST+ + L+R ++ G I I GK+++ + +R+ + I+PQD +F T +
Sbjct: 53 GHTGSGKSTIAKLLYRFYDAE-GDIKIGGKNVNKYNRNSIRSIIGIVPQDTILFNETIKY 111
Query: 1027 NLDPLEEHA-DEQIWEALDKCQLGDEVRKKKGKLDSQ------------------GRVLL 1067
N+ + A DE++ +A QL D + K D+ R LL
Sbjct: 112 NILYGKLDATDEEVIKATKSAQLYDFIEALPKKWDTIVGNKGMKLSGGERQRIAIARCLL 171
Query: 1068 KKSKVLVLDEATASVDTATDNQIQQTLRQHFSDCTVVTIAHRITSVLDSAMVLLLNHGLI 1127
K K+++ DEAT+S+D+ T+ Q+ + + T++ IAHR++++ + ++LLN G I
Sbjct: 172 KDPKIVIFDEATSSLDSKTEYLFQKAVEDLRKNRTLIIIAHRLSTISSAESIILLNKGKI 231
Query: 1128 KEYDSPTKLLENK 1140
E + LL+
Sbjct: 232 VEKGTHKDLLKLN 244
|
| >2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str} Length = 260 | Back alignment and structure |
|---|
Score = 111 bits (281), Expect = 2e-27
Identities = 67/237 (28%), Positives = 113/237 (47%), Gaps = 32/237 (13%)
Query: 357 AIEIIDGSFSWDFSSPNPTLRNINLKVFHGMRVAVCGTVGSGKSSCLSCILGGVPK---E 413
IE D +FS+ + + TL++IN + G A+ G GSGKS+ + +
Sbjct: 17 NIEFSDVNFSYPKQTNHRTLKSINFFIPSGTTCALVGHTGSGKSTIAKLL----YRFYDA 72
Query: 414 SGIIRLCGTK-------------AYVAQSPWIQSGKIEENILFGKEMDRERYERVLEAC- 459
G I++ G V Q + + I+ NIL+GK + E V++A
Sbjct: 73 EGDIKIGGKNVNKYNRNSIRSIIGIVPQDTILFNETIKYNILYGKLDATD--EEVIKATK 130
Query: 460 --SLKKDLEVLPFGDQTIIGERGINLSGGQKQRIQIARPLYQDADIFLLDDPFSPVDDHT 517
L +E LP TI+G +G+ LSGG++QRI IAR L +D I + D+ S +D T
Sbjct: 131 SAQLYDFIEALPKKWDTIVGNKGMKLSGGERQRIAIARCLLKDPKIVIFDEATSSLDSKT 190
Query: 518 GAH----LFKFCWVSSSKTVIYATHQVEFLPAADLILVIKDGKITQAGKYSDILNSG 570
+ + ++T+I H++ + +A+ I+++ GKI + G + D+L
Sbjct: 191 EYLFQKAVED---LRKNRTLIIIAHRLSTISSAESIILLNKGKIVEKGTHKDLLKLN 244
|
| >2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A* Length = 271 | Back alignment and structure |
|---|
Score = 116 bits (292), Expect = 7e-29
Identities = 60/247 (24%), Positives = 102/247 (41%), Gaps = 24/247 (9%)
Query: 358 IEIIDGSFSWDFSSPN-PTLRNINLKVFHGMRVAVCGTVGSGKSSCLSCILGGVPKESGI 416
++ D SF++ + PN L+ + ++ G A+ G GSGKS+ + + G
Sbjct: 17 VKFQDVSFAYP-NHPNVQVLQGLTFTLYPGKVTALVGPNGSGKSTVAALLQNLYQPTGGK 75
Query: 417 IRLCGTK-------------AYVAQSPWIQSGKIEENILFGKEMDRERYERVLEACSL-- 461
+ L G A V Q P + ENI +G E +
Sbjct: 76 VLLDGEPLVQYDHHYLHTQVAAVGQEPLLFGRSFRENIAYGLTRTPTM-EEITAVAMESG 134
Query: 462 -KKDLEVLPFGDQTIIGERGINLSGGQKQRIQIARPLYQDADIFLLDDPFSPVDDHTGAH 520
+ P G T +GE G LSGGQ+Q + +AR L + + +LD+ S +D
Sbjct: 135 AHDFISGFPQGYDTEVGETGNQLSGGQRQAVALARALIRKPRLLILDNATSALDAGNQLR 194
Query: 521 ----LFKFCWVSSSKTVIYATHQVEFLPAADLILVIKDGKITQAGKYSDILNSGTDFMEL 576
L++ +S+TV+ T Q+ A IL +K+G + + G + ++ G + +
Sbjct: 195 VQRLLYE-SPEWASRTVLLITQQLSLAERAHHILFLKEGSVCEQGTHLQLMERGGCYRSM 253
Query: 577 VGAHKQA 583
V A
Sbjct: 254 VEALAAP 260
|
| >2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A* Length = 271 | Back alignment and structure |
|---|
Score = 108 bits (273), Expect = 2e-26
Identities = 56/248 (22%), Positives = 105/248 (42%), Gaps = 51/248 (20%)
Query: 945 HGEVNIRHLQVRYAPNLP--LVLR---------------GRTGSGKSTLIQTLFRIVEST 987
G V + + Y PN P VL+ G GSGKST+ L + + T
Sbjct: 14 KGLVKFQDVSFAY-PNHPNVQVLQGLTFTLYPGKVTALVGPNGSGKSTVAALLQNLYQPT 72
Query: 988 AGHILIDGKDISLIGLHDLRTRLSIIPQDPTMFEGTTRSNLD--PLEEHADEQIWEALDK 1045
G +L+DG+ + H L T+++ + Q+P +F + R N+ E+I +
Sbjct: 73 GGKVLLDGEPLVQYDHHYLHTQVAAVGQEPLLFGRSFRENIAYGLTRTPTMEEITAVAME 132
Query: 1046 C---------------QLGDEVRKKKGKLDSQG--------RVLLKKSKVLVLDEATASV 1082
++G+ G S G R L++K ++L+LD AT+++
Sbjct: 133 SGAHDFISGFPQGYDTEVGE-----TGNQLSGGQRQAVALARALIRKPRLLILDNATSAL 187
Query: 1083 DTATDNQIQQTLRQ--HFSDCTVVTIAHRITSVLDSAMVLLLNHGLIKEYDSPTKLLENK 1140
D ++Q+ L + ++ TV+ I +++ + +L L G + E + +L+E
Sbjct: 188 DAGNQLRVQRLLYESPEWASRTVLLITQQLSLAERAHHILFLKEGSVCEQGTHLQLMERG 247
Query: 1141 SSSFAQLV 1148
+ +V
Sbjct: 248 -GCYRSMV 254
|
| >2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus} Length = 279 | Back alignment and structure |
|---|
Score = 110 bits (277), Expect = 8e-27
Identities = 53/257 (20%), Positives = 96/257 (37%), Gaps = 48/257 (18%)
Query: 347 EKMPRGNSDTAIEIIDGSFSWDFSSPNPTLRNINLKVFHGMRVAVCGTVGSGKSSCLSCI 406
+ S I++ L+ I+ ++ G + + G G+GK++ L+ +
Sbjct: 11 SGLVPRGSHMLIQLDQIGRMKQ---GKTILKKISWQIAKGDKWILYGLNGAGKTTLLNIL 67
Query: 407 LGGVPKESGIIRLCGTK---------------AYVAQS---PWIQSGKIEENILFGK--- 445
P SG + L G +V+ S + + ++ + ++ G
Sbjct: 68 NAYEPATSGTVNLFGKMPGKVGYSAETVRQHIGFVSHSLLEKFQEGERVIDVVISGAFKS 127
Query: 446 --------EMDRERYERVLEACSLKKDLEVLPFGDQTIIGERGINLSGGQKQRIQIARPL 497
+ R ++L+ + G LS G+KQR+ IAR L
Sbjct: 128 IGVYQDIDDEIRNEAHQLLKLVGMS-AKAQQYIG----------YLSTGEKQRVMIARAL 176
Query: 498 YQDADIFLLDDPFSPVDDHTGAHLFKF----CWVSSSKTVIYATHQVEFLPAA-DLILVI 552
+ +LD+P + +D L + +IY TH +E + A IL++
Sbjct: 177 MGQPQVLILDEPAAGLDFIARESLLSILDSLSDSYPTLAMIYVTHFIEEITANFSKILLL 236
Query: 553 KDGKITQAGKYSDILNS 569
KDG+ Q G DIL S
Sbjct: 237 KDGQSIQQGAVEDILTS 253
|
| >2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus} Length = 279 | Back alignment and structure |
|---|
Score = 73.8 bits (182), Expect = 2e-14
Identities = 41/243 (16%), Positives = 83/243 (34%), Gaps = 50/243 (20%)
Query: 948 VNIRHLQVRYAPNLPL-------------VLRGRTGSGKSTLIQTLFRIVESTAGHILID 994
+ + + L +L G G+GK+TL+ L +T+G + +
Sbjct: 22 IQLDQIGRMKQGKTILKKISWQIAKGDKWILYGLNGAGKTTLLNILNAYEPATSGTVNLF 81
Query: 995 GKDISLIG--LHDLRTRLSIIPQDPTMFEGTTRSNLDPLE-----------------EHA 1035
GK +G +R + + + ++ +
Sbjct: 82 GKMPGKVGYSAETVRQHIGFVSHS---LLEKFQEGERVIDVVISGAFKSIGVYQDIDDEI 138
Query: 1036 DEQIWEALDKCQLGDEVRKKKGKLDSQG---RVLL-----KKSKVLVLDEATASVDTATD 1087
+ + L + + ++ G L S G RV++ + +VL+LDE A +D
Sbjct: 139 RNEAHQLLKLVGMSAKAQQYIGYL-STGEKQRVMIARALMGQPQVLILDEPAAGLDFIAR 197
Query: 1088 NQIQQTLR---QHFSDCTVVTIAHRITSVLDSAM-VLLLNHGLIKEYDSPTKLL--ENKS 1141
+ L + ++ + H I + + +LLL G + + +L EN S
Sbjct: 198 ESLLSILDSLSDSYPTLAMIYVTHFIEEITANFSKILLLKDGQSIQQGAVEDILTSENMS 257
Query: 1142 SSF 1144
F
Sbjct: 258 RFF 260
|
| >2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii} Length = 263 | Back alignment and structure |
|---|
Score = 107 bits (268), Expect = 9e-26
Identities = 59/277 (21%), Positives = 105/277 (37%), Gaps = 37/277 (13%)
Query: 358 IEIIDGSFSWDFSSP-NPTLRNINLKVFHGMRVAVCGTVGSGKSSCLSCILGGVPKESGI 416
I++ + + +L NINL+V +G +V + G GSGK++ L I G +P SG
Sbjct: 2 IQLKNVGITLSGKGYERFSLENINLEV-NGEKVIILGPNGSGKTTLLRAISGLLP-YSGN 59
Query: 417 IRLCGT--------KAYVAQSPWIQSG--KIEENILFG---KEMDRERYERVLEACSLKK 463
I + G Y P + + + K +DR+ + +L+A L +
Sbjct: 60 IFINGMEVRKIRNYIRYSTNLPEAYEIGVTVNDIVYLYEELKGLDRDLFLEMLKALKLGE 119
Query: 464 DLEVLPFGDQTIIGERGIN-LSGGQKQRIQIARPLYQDADIFLLDDPFSPVDDHTGAHLF 522
++ R + LS GQ ++ + L +I LD+PF VD +
Sbjct: 120 EIL-----------RRKLYKLSAGQSVLVRTSLALASQPEIVGLDEPFENVDAARRHVIS 168
Query: 523 KFCWVSS-SKTVIYATH-QVEFLPAADLILVI-KDGKITQAGKYSDILNSGTDFMELVGA 579
+ ++ K I TH + ++ S++L S +E G
Sbjct: 169 R--YIKEYGKEGILVTHELDMLNLYKEYKAYFLVGNRLQGPISVSELLES--SIVE--GE 222
Query: 580 HKQALSGLDSIDRGPVSERKSINKENDGTSTTNEIVN 616
AL LD +D+ + + + + N I
Sbjct: 223 RNDALLVLDIMDKKVSIVKGDLGMKFGALGSLNRIYG 259
|
| >2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii} Length = 263 | Back alignment and structure |
|---|
Score = 70.1 bits (172), Expect = 4e-13
Identities = 38/195 (19%), Positives = 82/195 (42%), Gaps = 29/195 (14%)
Query: 963 LVLRGRTGSGKSTLIQTLFRIVESTAGHILIDGKDISLIGLHDLRTRLSIIPQDPTMF-- 1020
+++ G GSGK+TL++ + ++ +G+I I+G ++ +R + P +
Sbjct: 33 VIILGPNGSGKTTLLRAISGLLP-YSGNIFINGMEVR-----KIRNYIRYSTNLPEAYEI 86
Query: 1021 EGTTRSN------LDPLEEHADEQIWEALDKCQLGDEVRKKKGKLDSQG--------RVL 1066
T L L+ + E L +LG+E+ ++K S G L
Sbjct: 87 GVTVNDIVYLYEELKGLDR---DLFLEMLKALKLGEEILRRKLYKLSAGQSVLVRTSLAL 143
Query: 1067 LKKSKVLVLDEATASVDTATDNQIQQTLRQHFSDCTVVTIAHRITSVLDSA--MVLLLNH 1124
+ +++ LDE +VD A + I + ++++ + + H + + L
Sbjct: 144 ASQPEIVGLDEPFENVDAARRHVISRYIKEYGK--EGILVTHELDMLNLYKEYKAYFLVG 201
Query: 1125 GLIKEYDSPTKLLEN 1139
++ S ++LLE+
Sbjct: 202 NRLQGPISVSELLES 216
|
| >2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae} Length = 253 | Back alignment and structure |
|---|
Score = 103 bits (258), Expect = 2e-24
Identities = 54/231 (23%), Positives = 92/231 (39%), Gaps = 32/231 (13%)
Query: 355 DTAIEIIDGSFSWDFSSPNPTLRNINLKVFHGMRVAVCGTVGSGKSSCLSCILGGVPKES 414
+ A+ + + F + + N + +N + G +AV G G GKS+ L +LG
Sbjct: 2 NKALSVENLGFYYQ--AENFLFQQLNFDLNKGDILAVLGQNGCGKSTLLDLLLGIHRPIQ 59
Query: 415 GIIRLCGTKAYVAQSPWIQSG-KIEENILFG-----------KEMDRERYERVLEACSLK 462
G I + + +V Q + + +L G K D + + L+
Sbjct: 60 GKIEVYQSIGFVPQFFSSPFAYSVLDIVLMGRSTHINTFAKPKSHDYQVAMQALDY---- 115
Query: 463 KDLEVLPFGDQTIIGERGIN-LSGGQKQRIQIARPLYQDADIFLLDDPFSPVDDHTGAHL 521
L + R LSGGQ+Q I IAR + + + LLD+P S +D +
Sbjct: 116 --LNLTHLAK------REFTSLSGGQRQLILIARAIASECKLILLDEPTSALDLANQDIV 167
Query: 522 FKFC---WVSSSKTVIYATHQVEFLPA-ADLILVIKDGKITQAGKYSDILN 568
S + TV++ THQ + A A+ L++ G+ +IL
Sbjct: 168 LSLLIDLAQSQNMTVVFTTHQPNQVVAIANKTLLLNKQNFKF-GETRNILT 217
|
| >2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae} Length = 253 | Back alignment and structure |
|---|
Score = 58.7 bits (143), Expect = 2e-09
Identities = 44/218 (20%), Positives = 77/218 (35%), Gaps = 53/218 (24%)
Query: 948 VNIRHLQVRYAPNLPLVLR---------------GRTGSGKSTLIQTLFRIVESTAGHIL 992
+++ +L Y + + G+ G GKSTL+ L I G I
Sbjct: 5 LSVENLGFYY-QAENFLFQQLNFDLNKGDILAVLGQNGCGKSTLLDLLLGIHRPIQGKIE 63
Query: 993 IDGKDISLIGLHDLRTRLSIIPQDPTMFEGTT-----------RSNLDPLEEHADEQI-W 1040
+ + +PQ + + N + D Q+
Sbjct: 64 VYQ-------------SIGFVPQFFSSPFAYSVLDIVLMGRSTHINTFAKPKSHDYQVAM 110
Query: 1041 EALDKCQLGDEVRKKKGKLDSQG---RVLL-----KKSKVLVLDEATASVDTATDNQIQQ 1092
+ALD L +++ L S G +L+ + K+++LDE T+++D A + +
Sbjct: 111 QALDYLNLTHLAKREFTSL-SGGQRQLILIARAIASECKLILLDEPTSALDLANQDIVLS 169
Query: 1093 TLRQ--HFSDCTVVTIAHRITSVLDSA-MVLLLNHGLI 1127
L + TVV H+ V+ A LLLN
Sbjct: 170 LLIDLAQSQNMTVVFTTHQPNQVVAIANKTLLLNKQNF 207
|
| >2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima} Length = 266 | Back alignment and structure |
|---|
Score = 90.7 bits (226), Expect = 4e-20
Identities = 57/232 (24%), Positives = 100/232 (43%), Gaps = 26/232 (11%)
Query: 357 AIEIIDGSFSWDFSSP--NPTLRNINLKVFHGMRVAVCGTVGSGKSSCLSCILGGVPKES 414
IE+++ S + +P L N++L + G + V G GSGKS+ L + G + S
Sbjct: 2 RIEVVNVSHIFHRGTPLEKKALENVSLVINEGECLLVAGNTGSGKSTLLQIVAGLIEPTS 61
Query: 415 GIIRLCGTKA----------YVAQSPWIQ--SGKIEENILFGKE---MDRERYERVLEAC 459
G + G + Q P Q + ++ + + F + DR+ V +A
Sbjct: 62 GDVLYDGERKKGYEIRRNIGIAFQYPEDQFFAERVFDEVAFAVKNFYPDRDPVPLVKKA- 120
Query: 460 SLKKDLEVLPFGDQTIIGERGINLSGGQKQRIQIARPLYQDADIFLLDDPFSPVDDHTGA 519
+E + + LSGG+K+R+ IA + + DI +LD+P +D
Sbjct: 121 -----MEFVGLDFDSFKDRVPFFLSGGEKRRVAIASVIVHEPDILILDEPLVGLDREGKT 175
Query: 520 HLFKFC--WVSSSKTVIYATHQVEFLPA-ADLILVIKDGKITQAGKYSDILN 568
L + W + KTVI +H +E + D ++V++ GK G + L
Sbjct: 176 DLLRIVEKWKTLGKTVILISHDIETVINHVDRVVVLEKGKKVFDGTRMEFLE 227
|
| >2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima} Length = 266 | Back alignment and structure |
|---|
Score = 86.9 bits (216), Expect = 7e-19
Identities = 48/205 (23%), Positives = 85/205 (41%), Gaps = 26/205 (12%)
Query: 967 GRTGSGKSTLIQTLFRIVESTAGHILIDGKDISLIGLHDLRTRLSIIPQDPT--MFEGTT 1024
G TGSGKSTL+Q + ++E T+G +L DG+ +++R + I Q P F
Sbjct: 40 GNTGSGKSTLLQIVAGLIEPTSGDVLYDGERKK---GYEIRRNIGIAFQYPEDQFFAERV 96
Query: 1025 R-------SNLDPLEEHADEQIWEALDKCQLGDEVRKKKG--KLDSQG---RV-----LL 1067
N P + + +A++ L + K + L S G RV ++
Sbjct: 97 FDEVAFAVKNFYPDRD-PVPLVKKAMEFVGLDFDSFKDRVPFFL-SGGEKRRVAIASVIV 154
Query: 1068 KKSKVLVLDEATASVDTATDNQIQQTLRQ-HFSDCTVVTIAHRITSVLDSA-MVLLLNHG 1125
+ +L+LDE +D + + + + TV+ I+H I +V++ V++L G
Sbjct: 155 HEPDILILDEPLVGLDREGKTDLLRIVEKWKTLGKTVILISHDIETVINHVDRVVVLEKG 214
Query: 1126 LIKEYDSPTKLLENKSSSFAQLVAE 1150
+ + LE F
Sbjct: 215 KKVFDGTRMEFLEKYDPRFFTSKML 239
|
| >3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124} Length = 275 | Back alignment and structure |
|---|
Score = 88.4 bits (220), Expect = 2e-19
Identities = 51/243 (20%), Positives = 96/243 (39%), Gaps = 43/243 (17%)
Query: 354 SDTAIEIIDGSFSWDFSSPNPTLRNINLKVFHGMRVAVCGTVGSGKSSCLSCILGGVPKE 413
D +++ + ++++ + L+ IN+ + G A+ G G GKS+ G +
Sbjct: 4 EDYILKVEELNYNYSDGTH--ALKGINMNIKRGEVTAILGGNGVGKSTLFQNFNGILKPS 61
Query: 414 SGIIRLCGTKA---------------YVAQSPWIQ--SGKIEENILFG--------KEMD 448
SG I V Q P Q S + +++ FG E+
Sbjct: 62 SGRILFDNKPIDYSRKGIMKLRESIGIVFQDPDNQLFSASVYQDVSFGAVNMKLPEDEI- 120
Query: 449 RERYERVLEACSLKKDLEVLPFGDQTIIGERGINLSGGQKQRIQIARPLYQDADIFLLDD 508
R+R + L+ ++ + LS GQK+R+ IA L + + +LD+
Sbjct: 121 RKRVDNALKRTGIEHLKDKPTH-----------CLSFGQKKRVAIAGVLVMEPKVLILDE 169
Query: 509 PFS---PVDDHTGAHLFKFCWVSSSKTVIYATHQVEFLPA-ADLILVIKDGKITQAGKYS 564
P + P+ L T+I ATH ++ +P D + V+K+G++ G
Sbjct: 170 PTAGLDPMGVSEIMKLLVEMQKELGITIIIATHDIDIVPLYCDNVFVMKEGRVILQGNPK 229
Query: 565 DIL 567
++
Sbjct: 230 EVF 232
|
| >3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124} Length = 275 | Back alignment and structure |
|---|
Score = 77.6 bits (192), Expect = 1e-15
Identities = 53/196 (27%), Positives = 87/196 (44%), Gaps = 23/196 (11%)
Query: 967 GRTGSGKSTLIQTLFRIVESTAGHILIDGKDISL--IGLHDLRTRLSIIPQDPT--MFEG 1022
G G GKSTL Q I++ ++G IL D K I G+ LR + I+ QDP +F
Sbjct: 41 GGNGVGKSTLFQNFNGILKPSSGRILFDNKPIDYSRKGIMKLRESIGIVFQDPDNQLFSA 100
Query: 1023 TTRS-------NLDPLEEHADEQIWEALDKCQLGDEVRKKKGKLDSQG---RV-----LL 1067
+ N+ E+ +++ AL + + + ++ K S G RV L+
Sbjct: 101 SVYQDVSFGAVNMKLPEDEIRKRVDNALKRTGI-EHLKDKPTHCLSFGQKKRVAIAGVLV 159
Query: 1068 KKSKVLVLDEATASVDTATDNQIQQTLR--QHFSDCTVVTIAHRITSVLDSA-MVLLLNH 1124
+ KVL+LDE TA +D ++I + L Q T++ H I V V ++
Sbjct: 160 MEPKVLILDEPTAGLDPMGVSEIMKLLVEMQKELGITIIIATHDIDIVPLYCDNVFVMKE 219
Query: 1125 GLIKEYDSPTKLLENK 1140
G + +P ++ K
Sbjct: 220 GRVILQGNPKEVFAEK 235
|
| >3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; NMR {Saccharomyces cerevisiae} Length = 608 | Back alignment and structure |
|---|
Score = 89.3 bits (222), Expect = 2e-18
Identities = 43/242 (17%), Positives = 89/242 (36%), Gaps = 28/242 (11%)
Query: 373 NPTLRNINLKVFHGMRVAVCGTVGSGKSSCLSCILGGVPKESGIIRLCGTKAYVAQSPWI 432
+ L + + + G G+GK++ + + G + + G + Q
Sbjct: 365 DFVLNVEEGEFSDSEILVMMGENGTGKTTLIKLLAGALKPDEGQDIPKLNVSMKPQKIAP 424
Query: 433 QS-GKIEENI---LFGKEMDRERYERVLEACSLKKDLEVLPFGDQTIIGERGINLSGGQK 488
+ G + + + G+ ++ + V++ + ++ +LSGG+
Sbjct: 425 KFPGTVRQLFFKKIRGQFLNPQFQTDVVKPLRIDDIIDQEVQ-----------HLSGGEL 473
Query: 489 QRIQIARPLYQDADIFLLDDPFSPVDDHTG---AHLFKFCWVSSSKTVIYATHQVEFLPA 545
QR+ I L ADI+L+D+P + +D + + + + + KT H
Sbjct: 474 QRVAIVLALGIPADIYLIDEPSAYLDSEQRIICSKVIRRFILHNKKTAFIVEHDFIMATY 533
Query: 546 -ADLILVIKDGKITQAGKYSDILNSGTDFMELVGAHKQALSGLD-SIDRGPVSERKSINK 603
AD ++V + A L+ + L L+ + R P S R INK
Sbjct: 534 LADKVIVFEGIPSKNA--------HARAPESLLTGCNRFLKNLNVTFRRDPNSFRPRINK 585
Query: 604 EN 605
+
Sbjct: 586 LD 587
|
| >3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; NMR {Saccharomyces cerevisiae} Length = 608 | Back alignment and structure |
|---|
Score = 81.6 bits (202), Expect = 7e-16
Identities = 48/262 (18%), Positives = 86/262 (32%), Gaps = 57/262 (21%)
Query: 357 AIEII--------DGSFSWDFSSPNPTLRNINLKVFHGMRVAVCGTVGSGKSSCLSCILG 408
AI+II + + S N + G + + GT G GKS+ L + G
Sbjct: 69 AIQIINLPTNLEAHVTHRY---SANSFKLHRLPTPRPGQVLGLVGTNGIGKSTALKILAG 125
Query: 409 GVPKESGIIRLCGTKAYVA------------------------QSPWIQ--SGKIEENIL 442
G + + ++ I+ +
Sbjct: 126 KQKPNLGRFDDPPEWQEIIKYFRGSELQNYFTKMLEDDIKAIIKPQYVDNIPRAIKGPVQ 185
Query: 443 FGKEM----DRERYERVLEACSLKKDLEVLPFGDQTIIGERGINLSGGQKQRIQIARPLY 498
E+ + E V K L++ + I LSGG+ QR I
Sbjct: 186 KVGELLKLRMEKSPEDVKRYI---KILQLENVLKRDIE-----KLSGGELQRFAIGMSCV 237
Query: 499 QDADIFLLDDPFSPVDDHTGAHLFKF--CWVSSSKTVIYATHQVEFLPA-ADLILVIKD- 554
Q+AD+++ D+P S +D + + ++ +K VI H + L +D + +I
Sbjct: 238 QEADVYMFDEPSSYLDVKQRLNAAQIIRSLLAPTKYVICVEHDLSVLDYLSDFVCIIYGV 297
Query: 555 ----GKITQAGKYSDILNSGTD 572
G +T + +N D
Sbjct: 298 PSVYGVVTLPASVREGINIFLD 319
|
| >3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; NMR {Saccharomyces cerevisiae} Length = 608 | Back alignment and structure |
|---|
Score = 52.3 bits (126), Expect = 7e-07
Identities = 37/194 (19%), Positives = 71/194 (36%), Gaps = 31/194 (15%)
Query: 963 LVLRGRTGSGKSTLIQTLFRIVESTAGHILIDGKDISLIGLHDLRTRLSIIPQDPTM-FE 1021
LV+ G G+GK+TLI+ L ++ G + +S+ PQ F
Sbjct: 381 LVMMGENGTGKTTLIKLLAGALKPDEGQDIPKLN-------------VSMKPQKIAPKFP 427
Query: 1022 GTTRS-NLDPL-EEHADEQIW-EALDKCQLGDEVRKKKGKLDSQG--------RVLLKKS 1070
GT R + + + Q + + ++ D + ++ L S G L +
Sbjct: 428 GTVRQLFFKKIRGQFLNPQFQTDVVKPLRIDDIIDQEVQHL-SGGELQRVAIVLALGIPA 486
Query: 1071 KVLVLDEATASVDTATDNQIQQTLRQHF--SDCTVVTIAH---RITSVLDSAMVLLLNHG 1125
+ ++DE +A +D+ + +R+ + T + H T + D +V
Sbjct: 487 DIYLIDEPSAYLDSEQRIICSKVIRRFILHNKKTAFIVEHDFIMATYLADKVIVFEGIPS 546
Query: 1126 LIKEYDSPTKLLEN 1139
+P LL
Sbjct: 547 KNAHARAPESLLTG 560
|
| >3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; NMR {Saccharomyces cerevisiae} Length = 608 | Back alignment and structure |
|---|
Score = 49.6 bits (119), Expect = 5e-06
Identities = 35/182 (19%), Positives = 66/182 (36%), Gaps = 31/182 (17%)
Query: 963 LVLRGRTGSGKSTLIQTLFRIVESTAGHI-----------LIDGKDISLIGLHDLRTRLS 1011
L L G G GKST ++ L + G G ++ L +
Sbjct: 106 LGLVGTNGIGKSTALKILAGKQKPNLGRFDDPPEWQEIIKYFRGSELQNYFTKMLEDDIK 165
Query: 1012 IIPQD------PTMFEGTTRSNLDPLEEHADE---QIWEALDKCQLGDEVRKKKGKLDSQ 1062
I + P +G + + L+ ++ + + QL + +++ KL S
Sbjct: 166 AIIKPQYVDNIPRAIKGPVQKVGELLKLRMEKSPEDVKRYIKILQLENVLKRDIEKL-SG 224
Query: 1063 G---RV-----LLKKSKVLVLDEATASVDTATDNQIQQTLRQ-HFSDCTVVTIAHRITSV 1113
G R ++++ V + DE ++ +D Q +R V+ + H + SV
Sbjct: 225 GELQRFAIGMSCVQEADVYMFDEPSSYLDVKQRLNAAQIIRSLLAPTKYVICVEHDL-SV 283
Query: 1114 LD 1115
LD
Sbjct: 284 LD 285
|
| >3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B* Length = 607 | Back alignment and structure |
|---|
Score = 88.9 bits (221), Expect = 4e-18
Identities = 51/251 (20%), Positives = 93/251 (37%), Gaps = 30/251 (11%)
Query: 365 FSWDFSSPNPTLRNINLKVFHGMRVAVCGTVGSGKSSCLSCILGGVPKESGIIRLCGTKA 424
+ L ++ G + + G G GK++ + + G G + T A
Sbjct: 361 PRLVKDYGSFKLEVEPGEIRKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKVEWDLTVA 420
Query: 425 YVAQ--SPWIQSGKIEENI---LFGKEMDRERYERVLEACSLKKDLEVLPFGDQTIIGER 479
Y Q + G + E + K +L+ + +
Sbjct: 421 YKPQYIKAEYE-GTVYELLSKIDSSKLNSNFYKTELLKPLGIIDLYDRNVE--------- 470
Query: 480 GINLSGGQKQRIQIARPLYQDADIFLLDDPFSPVDDHTG---AHLFKFCWVSSSKTVIYA 536
+LSGG+ QR+ IA L +DADI+LLD+P + +D + + + KT +
Sbjct: 471 --DLSGGELQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTALVV 528
Query: 537 THQVEFLPA-ADLILVIKDGKITQAGKYSDILNSGTDFMELVGAHKQALSGLD-SIDRGP 594
H V + +D ++V +G+ + G+ M + + L+ + + R P
Sbjct: 529 EHDVLMIDYVSDRLIVF-EGEPGRHGRALPP-------MGMREGMNRFLASVGITFRRDP 580
Query: 595 VSERKSINKEN 605
S R NKE
Sbjct: 581 DSGRPRANKEG 591
|
| >3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B* Length = 607 | Back alignment and structure |
|---|
Score = 75.8 bits (187), Expect = 4e-14
Identities = 48/253 (18%), Positives = 85/253 (33%), Gaps = 47/253 (18%)
Query: 347 EKMPRGNSDTAIEIIDGSFSWD----FS-SPNPTLRNINLKVFHGMRVAVCGTVGSGKSS 401
K P AI I++ D N + V GM V + G G+GK++
Sbjct: 77 HKCP----FNAISIVNLPEQLDEDCVHRYGVNAFVLYRLPIVKDGMVVGIVGPNGTGKTT 132
Query: 402 CLSCILGGVPKESGIIRLCG--TKAYVAQSPW------IQSGKIEEN-----------IL 442
+ + G + + +++G+I +
Sbjct: 133 AVKILAGQLIPNLCEDNDSWDNVIRAFRGNELQNYFERLKNGEIRPVVKPQYVDLLPKAV 192
Query: 443 FGKEMD----RERYERVLEACSLKKDLEVLPFGDQTIIGERGINLSGGQKQRIQIARPLY 498
GK + + + E K+LE+ D+ + LSGG+ QR+ IA L
Sbjct: 193 KGKVRELLKKVDEVGKFEEVV---KELELENVLDRELH-----QLSGGELQRVAIAAALL 244
Query: 499 QDADIFLLDDPFSPVDDHTGAHLFKF--CWVSSSKTVIYATHQVEFLPA-ADLILVIKDG 555
+ A + D+P S +D + + + K V+ H + L +D+I V+
Sbjct: 245 RKAHFYFFDEPSSYLDIRQRLKVARVIRRLANEGKAVLVVEHDLAVLDYLSDVIHVVYGE 304
Query: 556 KITQAGKYSDILN 568
G Y
Sbjct: 305 P----GVYGIFSK 313
|
| >3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B* Length = 607 | Back alignment and structure |
|---|
Score = 50.4 bits (121), Expect = 3e-06
Identities = 31/162 (19%), Positives = 62/162 (38%), Gaps = 32/162 (19%)
Query: 963 LVLRGRTGSGKSTLIQTLFRIVESTAGHILIDGKDISLIGLHDLRTRLSIIPQDPTM--- 1019
+ + G G GK+T ++ L + E T G + D + + +
Sbjct: 385 IGIVGPNGIGKTTFVKMLAGVEEPTEGKVEWDLT---------------VAYKPQYIKAE 429
Query: 1020 FEGTTR---SNLDPLEEHADEQIWEALDKCQLGDEVRKKKGKLDSQG--------RVLLK 1068
+EGT S +D + +++ E L + D + L S G LL+
Sbjct: 430 YEGTVYELLSKIDSSKLNSNFYKTELLKPLGIIDLYDRNVEDL-SGGELQRVAIAATLLR 488
Query: 1069 KSKVLVLDEATASVDTATDNQIQQTLR--QHFSDCTVVTIAH 1108
+ + +LDE +A +D + + +R ++ T + + H
Sbjct: 489 DADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTALVVEH 530
|
| >3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B* Length = 607 | Back alignment and structure |
|---|
Score = 50.0 bits (120), Expect = 3e-06
Identities = 38/210 (18%), Positives = 82/210 (39%), Gaps = 44/210 (20%)
Query: 943 PSHGEVNIRHLQVRYAPN------LPLVLRGRT-------GSGKSTLIQTLFRIVE---- 985
P + + H RY N LP+V G G+GK+T ++ L +
Sbjct: 90 PEQLDEDCVH---RYGVNAFVLYRLPIVKDGMVVGIVGPNGTGKTTAVKILAGQLIPNLC 146
Query: 986 --STAGHILIDGKDISLIGLHDLRTR---LSIIPQ------DPTMFEGTTRSNLDPLEEH 1034
+ + +I + + + R + + + + P +G R L ++E
Sbjct: 147 EDNDSWDNVIRAFRGNELQNYFERLKNGEIRPVVKPQYVDLLPKAVKGKVRELLKKVDEV 206
Query: 1035 ADEQIWEALDKCQLGDEVRKKKGKLDSQG--------RVLLKKSKVLVLDEATASVDTAT 1086
+ E + + +L + + ++ +L S G LL+K+ DE ++ +D
Sbjct: 207 --GKFEEVVKELELENVLDRELHQL-SGGELQRVAIAAALLRKAHFYFFDEPSSYLDIRQ 263
Query: 1087 DNQIQQTLRQ-HFSDCTVVTIAHRITSVLD 1115
++ + +R+ V+ + H + +VLD
Sbjct: 264 RLKVARVIRRLANEGKAVLVVEHDL-AVLD 292
|
| >1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus} Length = 538 | Back alignment and structure |
|---|
Score = 83.5 bits (207), Expect = 1e-16
Identities = 51/251 (20%), Positives = 92/251 (36%), Gaps = 30/251 (11%)
Query: 365 FSWDFSSPNPTLRNINLKVFHGMRVAVCGTVGSGKSSCLSCILGGVPKESGIIRLCGTKA 424
+ L ++ G + + G G GK++ + + G G I T A
Sbjct: 291 PRLVKDYGSFRLEVEPGEIKKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKIEWDLTVA 350
Query: 425 YVAQ--SPWIQSGKIEENI---LFGKEMDRERYERVLEACSLKKDLEVLPFGDQTIIGER 479
Y Q + G + E + K +L+ + +
Sbjct: 351 YKPQYIKADYE-GTVYELLSKIDASKLNSNFYKTELLKPLGIIDLYDREVN--------- 400
Query: 480 GINLSGGQKQRIQIARPLYQDADIFLLDDPFSPVDDH---TGAHLFKFCWVSSSKTVIYA 536
LSGG+ QR+ IA L +DADI+LLD+P + +D + + + KT +
Sbjct: 401 --ELSGGELQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTALVV 458
Query: 537 THQVEFLPA-ADLILVIKDGKITQAGKYSDILNSGTDFMELVGAHKQALSGLD-SIDRGP 594
H V + +D ++V +G+ + G+ M + + L+ + + R P
Sbjct: 459 EHDVLMIDYVSDRLMVF-EGEPGKYGRALPP-------MGMREGMNRFLASIGITFRRDP 510
Query: 595 VSERKSINKEN 605
+ R NKE
Sbjct: 511 DTGRPRANKEG 521
|
| >1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus} Length = 538 | Back alignment and structure |
|---|
Score = 66.5 bits (163), Expect = 3e-11
Identities = 46/220 (20%), Positives = 78/220 (35%), Gaps = 44/220 (20%)
Query: 371 SPNPTLRNINLKVFHGMRVAVCGTVGSGKSSCLSCILGGVPKE------SGIIRLCGTKA 424
N + V GM V + G G+GKS+ + + G + S + +
Sbjct: 32 GVNAFVLYRLPVVKEGMVVGIVGPNGTGKSTAVKILAGQLIPNLCGDNDSWDGVIRAFRG 91
Query: 425 ----------------------YVAQSPWIQSGKIEENILFGKEMDRERYERVLEACSLK 462
YV P GK+ E + K + + E V++A L+
Sbjct: 92 NELQNYFEKLKNGEIRPVVKPQYVDLIPKAVKGKVIELL--KKADETGKLEEVVKALELE 149
Query: 463 KDLEVLPFGDQTIIGERGINLSGGQKQRIQIARPLYQDADIFLLDDPFSPVDDHTGAHLF 522
LE +LSGG+ QR+ IA L ++A + D+P S +D +
Sbjct: 150 NVLEREIQ-----------HLSGGELQRVAIAAALLRNATFYFFDEPSSYLDIRQRLNAA 198
Query: 523 KF--CWVSSSKTVIYATHQVEFLPA-ADLILVIKDGKITQ 559
+ K+V+ H + L +D+I V+
Sbjct: 199 RAIRRLSEEGKSVLVVEHDLAVLDYLSDIIHVVYGEPGVY 238
|
| >1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus} Length = 538 | Back alignment and structure |
|---|
Score = 51.1 bits (123), Expect = 2e-06
Identities = 36/215 (16%), Positives = 77/215 (35%), Gaps = 57/215 (26%)
Query: 948 VNIRHLQV----RYAPN------LPLVLRGRT-------GSGKSTLIQTLFRIV------ 984
++ L+ RY N LP+V G G+GKST ++ L +
Sbjct: 18 SHMEQLEEDCVHRYGVNAFVLYRLPVVKEGMVVGIVGPNGTGKSTAVKILAGQLIPNLCG 77
Query: 985 ESTAGHILIDGKDISLIGLHDLRTR---LSIIPQDPTMFEGTTRSNLDPLEEHADEQIWE 1041
++ + +I + + + + + + + + +L P + ++ E
Sbjct: 78 DNDSWDGVIRAFRGNELQNYFEKLKNGEIRPVVKPQ-YV------DLIP--KAVKGKVIE 128
Query: 1042 ALDKCQLGDEVRKKKGKLD------------SQG---RV-----LLKKSKVLVLDEATAS 1081
L K ++ + L+ S G RV LL+ + DE ++
Sbjct: 129 LLKKADETGKLEEVVKALELENVLEREIQHLSGGELQRVAIAAALLRNATFYFFDEPSSY 188
Query: 1082 VDTATDNQIQQTLRQ-HFSDCTVVTIAHRITSVLD 1115
+D + +R+ +V+ + H + +VLD
Sbjct: 189 LDIRQRLNAARAIRRLSEEGKSVLVVEHDL-AVLD 222
|
| >1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus} Length = 538 | Back alignment and structure |
|---|
Score = 49.2 bits (118), Expect = 7e-06
Identities = 37/177 (20%), Positives = 69/177 (38%), Gaps = 35/177 (19%)
Query: 963 LVLRGRTGSGKSTLIQTLFRIVESTAGHILIDGKDISLIGLHDLRTRLSIIPQDPTM--- 1019
+ + G G GK+T ++ L + E T G I D + + +
Sbjct: 315 IGIVGPNGIGKTTFVKMLAGVEEPTEGKIEWDLT---------------VAYKPQYIKAD 359
Query: 1020 FEGTTR---SNLDPLEEHADEQIWEALDKCQLGDEVRKKKGKLDSQG--------RVLLK 1068
+EGT S +D + +++ E L + D ++ +L S G LL+
Sbjct: 360 YEGTVYELLSKIDASKLNSNFYKTELLKPLGIIDLYDREVNEL-SGGELQRVAIAATLLR 418
Query: 1069 KSKVLVLDEATASVDTATDNQIQQTLR--QHFSDCTVVTIAH---RITSVLDSAMVL 1120
+ + +LDE +A +D + + +R ++ T + + H I V D MV
Sbjct: 419 DADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTALVVEHDVLMIDYVSDRLMVF 475
|
| >2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A Length = 986 | Back alignment and structure |
|---|
Score = 83.2 bits (205), Expect = 3e-16
Identities = 50/199 (25%), Positives = 83/199 (41%), Gaps = 18/199 (9%)
Query: 374 PTLRNINLKVFHGMRVAVCGTVGSGKSSCLSCILGGVPKESGIIRLCGTK-AYVAQSPWI 432
L L++ R +CG G GKS+ + I G + G + YV I
Sbjct: 449 ILLNKTQLRLKRARRYGICGPNGCGKSTLMRAIANG--QVDGFPTQEECRTVYVEHD--I 504
Query: 433 QSGKIEENIL-FGKEMDRERYERVLEACSLKKDLEVLPFGDQTIIGERGI-NLSGGQKQR 490
+ ++L F E E + K L F D+ I I LSGG K +
Sbjct: 505 DGTHSDTSVLDFVFESGVGTKEAI------KDKLIEFGFTDEMI--AMPISALSGGWKMK 556
Query: 491 IQIARPLYQDADIFLLDDPFSPVDDHTGAHLFKFCWVSSSKTVIYATHQVEFL-PAADLI 549
+ +AR + ++ADI LLD+P + +D A L + + T I +H FL + I
Sbjct: 557 LALARAVLRNADILLLDEPTNHLDTVNVAWLVNY-LNTCGITSITISHDSVFLDNVCEYI 615
Query: 550 LVIKDGKITQ-AGKYSDIL 567
+ + K+ + G +++ +
Sbjct: 616 INYEGLKLRKYKGNFTEFV 634
|
| >2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A Length = 986 | Back alignment and structure |
|---|
Score = 54.7 bits (131), Expect = 2e-07
Identities = 28/124 (22%), Positives = 49/124 (39%), Gaps = 12/124 (9%)
Query: 443 FGKEMDRERYERVLEACSLKKDLEVLPFGDQTIIGERGINLSGGQKQRIQIARPLYQDAD 502
+ + R+ E L + + I LSGGQK ++ +A +Q
Sbjct: 871 QFRPLTRKEIEEHCSMLGLDPE-----IVSHSRIR----GLSGGQKVKLVLAAGTWQRPH 921
Query: 503 IFLLDDPFSPVDDHTGAHLFKFCWVSSSKTVIYATHQVEFLPA-ADLILVIKDGKITQ-A 560
+ +LD+P + +D + L K VI TH EF + + +KDG++T
Sbjct: 922 LIVLDEPTNYLDRDSLGALSKA-LKEFEGGVIIITHSAEFTKNLTEEVWAVKDGRMTPSG 980
Query: 561 GKYS 564
+
Sbjct: 981 HNWV 984
|
| >2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A Length = 986 | Back alignment and structure |
|---|
Score = 51.2 bits (122), Expect = 2e-06
Identities = 56/304 (18%), Positives = 100/304 (32%), Gaps = 34/304 (11%)
Query: 817 LSRLIGVCKAPVIQQFSETISGSTTIRSLDQELRFRDTNMKLIDEYSRPKFHIAGAMEWL 876
L R+ V + I + S STT++ +++ L + + + +IA L
Sbjct: 322 LRRVGNVGEDDAIPELSHAGDVSTTLQVVNELL----KDETVAPRFKIVVEYIAAIGADL 377
Query: 877 RFCIDMLSSITFAFSLAFLISVPNGIIHPYKNLERKIISVERILQCACIPSEPALVIEAT 936
+ F ++ + E + +V+ I E +
Sbjct: 378 IDERIIDQQAWFTHITPYMTIFLHEKKAKDILDEFRKRAVDNIPVGPNFDDEEDEGEDLC 437
Query: 937 KPNNSRPSHGEVNIRHLQVRYAPNLPLVLRGRTGSGKSTLIQTLFRIVESTAGHILIDGK 996
S ++ + Q+R + G G GKSTL++ I
Sbjct: 438 NCEFSLAYGAKILLNKTQLRLKRARRYGICGPNGCGKSTLMR-------------AIANG 484
Query: 997 DISLIGLHDLRTRLSIIPQDPTMFEGTTRSNLDPLEEHA---DEQIWEALDKCQLGDEVR 1053
+ + R + D + S LD + E E I + L + DE+
Sbjct: 485 QVDGFPTQE-ECRTVYVEHDI-DGTHSDTSVLDFVFESGVGTKEAIKDKLIEFGFTDEMI 542
Query: 1054 KKK-GKLDSQG--------RVLLKKSKVLVLDEATASVDTATDNQIQQTLRQHFSDCTVV 1104
L S G R +L+ + +L+LDE T +DT + L T +
Sbjct: 543 AMPISAL-SGGWKMKLALARAVLRNADILLLDEPTNHLDTVNVAWLVNYLNT--CGITSI 599
Query: 1105 TIAH 1108
TI+H
Sbjct: 600 TISH 603
|
| >2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A Length = 986 | Back alignment and structure |
|---|
Score = 42.7 bits (100), Expect = 8e-04
Identities = 26/157 (16%), Positives = 61/157 (38%), Gaps = 9/157 (5%)
Query: 358 IEIIDGSFSWDFSSPNPTLRNINLKVFHGMRVAVCGTVGSGKSSCLSCILGGVPKESGII 417
+++ + F + + P + +IN + R+AV G G+GKS+ ++ + G + SG +
Sbjct: 672 VKVTNMEFQYP-GTSKPQITDINFQCSLSSRIAVIGPNGAGKSTLINVLTGELLPTSGEV 730
Query: 418 RLCGTK---AYVAQSPWIQSGKIEENILFGKEMDRERYERVLEACSLKKDLEVLPFGDQT 474
AY+ Q + + E + R++ + ++ + + D
Sbjct: 731 YT-HENCRIAYIKQHAFAHIESHLDKTPS--EYIQWRFQTGEDRETMDRANRQINENDAE 787
Query: 475 IIGERGINLSGGQKQRIQIARPLYQDADIFLLDDPFS 511
+ + I G +RI + + + + F
Sbjct: 788 AMNK--IFKIEGTPRRIAGIHSRRKFKNTYEYECSFL 822
|
| >1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12 Length = 214 | Back alignment and structure |
|---|
Score = 77.6 bits (192), Expect = 4e-16
Identities = 35/179 (19%), Positives = 81/179 (45%), Gaps = 30/179 (16%)
Query: 967 GRTGSGKSTLIQTLFRIVESTAGHILIDGKDISLIGLHDLRTRLSIIPQDPTMFEG-TTR 1025
G G GK+TL++T+ ++ G I+ +G I+ ++ ++ +P++ + +
Sbjct: 42 GPNGIGKTTLLKTISTYLKPLKGEIIYNGVPIT-----KVKGKIFFLPEEIIVPRKISVE 96
Query: 1026 SNLD--------PLEEHADEQIWEALDKCQLGDEVRKKKGKLDSQG---RVLLKKS---- 1070
L + + +I +AL+ ++ D ++KK G+L SQG RV L +
Sbjct: 97 DYLKAVASLYGVKVNK---NEIMDALESVEVLD-LKKKLGEL-SQGTIRRVQLASTLLVN 151
Query: 1071 -KVLVLDEATASVDTATDNQIQQTLRQHFSD-CTVVTIAHRITSVLDSAMVLLLNHGLI 1127
++ VLD+ ++D + +++ +++ + + V+ + S D L+
Sbjct: 152 AEIYVLDDPVVAIDEDSKHKVLKSILEILKEKGIVIISSREELSYCDV--NENLHKYST 208
|
| >1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12 Length = 214 | Back alignment and structure |
|---|
Score = 77.2 bits (191), Expect = 6e-16
Identities = 46/232 (19%), Positives = 83/232 (35%), Gaps = 42/232 (18%)
Query: 351 RGNSDTAIEIIDGSFSWDFSSPNPTLRNINLKVFHGMRVAVCGTVGSGKSSCLSCILGGV 410
+ + +EI D S +D L I + + G V G G GK++ L I +
Sbjct: 4 HHHHGSKLEIRDLSVGYDKPV----LERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYL 59
Query: 411 PKESGIIRLCG---TKA-----YVAQSPWIQSG-KIEENILF-----GKEMDRERYERVL 456
G I G TK ++ + + +E+ + G ++++ L
Sbjct: 60 KPLKGEIIYNGVPITKVKGKIFFLPEEIIVPRKISVEDYLKAVASLYGVKVNKNEIMDAL 119
Query: 457 EACSL---KKDLEVLPFGDQTIIGERGINLSGGQKQRIQIARPLYQDADIFLLDDPFSPV 513
E+ + KK L LS G +R+Q+A L +A+I++LDDP +
Sbjct: 120 ESVEVLDLKKKLG---------------ELSQGTIRRVQLASTLLVNAEIYVLDDPVVAI 164
Query: 514 DDHTGAHLFKF---CWVSSSKTVIYATHQVEFLPAADLILVIKDGKITQAGK 562
D+ + + K +I + L D+ + K
Sbjct: 165 DEDSKHKVLKSILEILKEKGIVIISSRE---ELSYCDVNENLHKYSTKIDKK 213
|
| >3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus} Length = 538 | Back alignment and structure |
|---|
Score = 79.3 bits (196), Expect = 3e-15
Identities = 46/245 (18%), Positives = 89/245 (36%), Gaps = 32/245 (13%)
Query: 373 NPTLRNINLKVFHGMRVAVCGTVGSGKSSCLSCILGGVPKESGIIRLCGTKA-----YVA 427
+ L N + G + + G G GK++ ++G + + G + +
Sbjct: 281 DFQLVVDNGEAKEGEIIGILGPNGIGKTTFARILVGEITADEGSVTPEKQILSYKPQRIF 340
Query: 428 QSPWIQSGK-IEENILFGKEMDRERYERVLEACSLKKDLEVLPFGDQTIIGERGINLSGG 486
+ + +E +E V + +L + LE +LSGG
Sbjct: 341 PNYDGTVQQYLENASKDALSTSSWFFEEVTKRLNLHRLLESNVN-----------DLSGG 389
Query: 487 QKQRIQIARPLYQDADIFLLDDPFSPVD----DHTGAHLFKFCWVSSSKTVIYATHQVEF 542
+ Q++ IA L ++AD+++LD P S +D + + H +
Sbjct: 390 ELQKLYIAATLAKEADLYVLDQPSSYLDVEERYIVAKAIKRVT-RERKAVTFIIDHDLSI 448
Query: 543 LPA-ADLILVIKDGKITQAGKYSDILNSGTDFMELVGAHKQALSGLD-SIDRGPVSERKS 600
AD I+V K G+ +AG + + G ++ L L+ + R + R
Sbjct: 449 HDYIADRIIVFK-GEPEKAGLAT------SPVTLKTGMNEF-LRELEVTFRRDAETGRPR 500
Query: 601 INKEN 605
+NK
Sbjct: 501 VNKIG 505
|
| >3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus} Length = 538 | Back alignment and structure |
|---|
Score = 73.1 bits (180), Expect = 2e-13
Identities = 45/224 (20%), Positives = 77/224 (34%), Gaps = 43/224 (19%)
Query: 376 LRNINLKVFH-GMRVAVCGTVGSGKSSCLSCILGGVPKESG-----------IIRLCGTK 423
+ L + V G G GK++ L + G + G + R G +
Sbjct: 14 FKLFGLPTPKNNTILGVLGKNGVGKTTVLKILAGEIIPNFGDPNSKVGKDEVLKRFRGKE 73
Query: 424 AY--------VAQSPWIQSGKIE---------ENILFGKEMDRERYERVLEACSLKKDLE 466
Y + +E N + K +R + + V E L
Sbjct: 74 IYNYFKELYSNELKIVHKIQYVEYASKFLKGTVNEILTKIDERGKKDEVKE------LLN 127
Query: 467 VLPFGDQTIIGERGINLSGGQKQRIQIARPLYQDADIFLLDDPFSPVDDHTGAHLFKF-C 525
+ ++ LSGG QR+ +A L ++AD+++ D P S +D ++ K
Sbjct: 128 MTNLWNKDAN-----ILSGGGLQRLLVAASLLREADVYIFDQPSSYLDVRERMNMAKAIR 182
Query: 526 WVSSSKTVIYATHQVEFL-PAADLILVIKDGKITQAGKYSDILN 568
+ +K VI H + L DLI +I G+ S
Sbjct: 183 ELLKNKYVIVVDHDLIVLDYLTDLIHIIYGESSVY-GRVSKSYA 225
|
| >3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus} Length = 538 | Back alignment and structure |
|---|
Score = 56.6 bits (137), Expect = 4e-08
Identities = 25/156 (16%), Positives = 54/156 (34%), Gaps = 18/156 (11%)
Query: 963 LVLRGRTGSGKSTLIQTLFRIVESTAGHILIDGKDISLIGLHDLRTRLSIIPQDPTMFEG 1022
+ + G G GK+T + L + + G + + + +S + + D T+ +
Sbjct: 297 IGILGPNGIGKTTFARILVGEITADEGSVTPEKQILS------YKPQRIFPNYDGTVQQY 350
Query: 1023 TTRSNLDPLEEHADEQIWEALDKCQLGDEVRKKKGKLDSQG--------RVLLKKSKVLV 1074
++ D L E + L + L S G L K++ + V
Sbjct: 351 LENASKDALSTS-SWFFEEVTKRLNLHRLLESNVNDL-SGGELQKLYIAATLAKEADLYV 408
Query: 1075 LDEATASVDTATDNQIQQTLR--QHFSDCTVVTIAH 1108
LD+ ++ +D + + ++ I H
Sbjct: 409 LDQPSSYLDVEERYIVAKAIKRVTRERKAVTFIIDH 444
|
| >3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus} Length = 538 | Back alignment and structure |
|---|
Score = 47.3 bits (113), Expect = 2e-05
Identities = 29/184 (15%), Positives = 66/184 (35%), Gaps = 41/184 (22%)
Query: 963 LVLRGRTGSGKSTLIQTLFRIVESTAGHILIDGKDISLIG-----LHDLR-TRLSIIPQD 1016
L + G+ G GK+T+++ L AG I+ + D + L R + ++
Sbjct: 28 LGVLGKNGVGKTTVLKIL-------AGEIIPNFGDPNSKVGKDEVLKRFRGKEIYNYFKE 80
Query: 1017 PTMFEGTTRS-----NLDPLEEHADEQIWEALDKCQLGDEVRKKKGKLDSQGR------- 1064
+ + ++ + + E L K + + K L+
Sbjct: 81 L--YSNELKIVHKIQYVEYASKFLKGTVNEILTKIDERGKKDEVKELLNMTNLWNKDANI 138
Query: 1065 -------------VLLKKSKVLVLDEATASVDTATDNQIQQTLRQHFSDCTVVTIAHRIT 1111
LL+++ V + D+ ++ +D + + +R+ + V+ + H +
Sbjct: 139 LSGGGLQRLLVAASLLREADVYIFDQPSSYLDVRERMNMAKAIRELLKNKYVIVVDHDL- 197
Query: 1112 SVLD 1115
VLD
Sbjct: 198 IVLD 201
|
| >1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius} Length = 355 | Back alignment and structure |
|---|
Score = 75.7 bits (187), Expect = 1e-14
Identities = 55/230 (23%), Positives = 90/230 (39%), Gaps = 52/230 (22%)
Query: 369 FSSPNPTLRNINLKVFHGMRVAVCGTVGSGKSSCLSCILGGVPKESGIIRLCGTKAYVAQ 428
+ ++R ++ ++ G V + G GSGK++ L I G G + + G +
Sbjct: 24 YPGGARSVRGVSFQIREGEMVGLLGPSGSGKTTILRLIAGLERPTKGDVWIGGKRV-TDL 82
Query: 429 SPW-------IQS------GKIEENILFGKEMDR----ERYERVLEACSLKKDLEVLPFG 471
P Q+ + +N+ FG R E RV E + LE
Sbjct: 83 PPQKRNVGLVFQNYALFQHMTVYDNVSFGLREKRVPKDEMDARVRELLRFMR-LESY--- 138
Query: 472 DQTIIGERGIN-LSGGQKQRIQIARPLYQDADIFLLDDPFSPVDD-------------HT 517
R + LSGGQ+QR+ +AR L + L D+PF+ +D H
Sbjct: 139 -----ANRFPHELSGGQQQRVALARALAPRPQVLLFDEPFAAIDTQIRRELRTFVRQVHD 193
Query: 518 GAHLFKFCWVSSSKTVIYATH-QVEFLPAADLILVIKDGKITQAGKYSDI 566
+ T ++ TH Q E L AD +LV+ +G + Q G ++
Sbjct: 194 EMGV----------TSVFVTHDQEEALEVADRVLVLHEGNVEQFGTPEEV 233
|
| >2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12 Length = 240 | Back alignment and structure |
|---|
Score = 73.3 bits (181), Expect = 2e-14
Identities = 55/201 (27%), Positives = 86/201 (42%), Gaps = 36/201 (17%)
Query: 396 GSGKSSCLSCILGGVPKESGIIRLCG-----TKAY------VAQS----PWIQSGKIEEN 440
G+GKS L I G V + G +RL G V Q P + + N
Sbjct: 34 GAGKSVFLELIAGIVKPDRGEVRLNGADITPLPPERRGIGFVPQDYALFPHL---SVYRN 90
Query: 441 ILFG-KEMDR-ERYERVLEACSLKKDLEVLPFGDQTIIGERGIN-LSGGQKQRIQIARPL 497
I +G + ++R ER RV E E L + +R LSGG++QR+ +AR L
Sbjct: 91 IAYGLRNVERVERDRRVREM------AEKLGIAH---LLDRKPARLSGGERQRVALARAL 141
Query: 498 YQDADIFLLDDPFSPVD----DHTGAHLFKFCWVSSSKTVIYATH-QVEFLPAADLILVI 552
+ LLD+P S VD L +F +++ TH +E AD + V+
Sbjct: 142 VIQPRLLLLDEPLSAVDLKTKGVLMEEL-RFVQREFDVPILHVTHDLIEAAMLADEVAVM 200
Query: 553 KDGKITQAGKYSDILNSGTDF 573
+G+I + GK ++ ++
Sbjct: 201 LNGRIVEKGKLKELFSAKNGE 221
|
| >2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12 Length = 240 | Back alignment and structure |
|---|
Score = 45.2 bits (108), Expect = 5e-05
Identities = 47/209 (22%), Positives = 87/209 (41%), Gaps = 44/209 (21%)
Query: 963 LVLRGRTGSGKSTLIQTLFRIVESTAGHILIDGKDISLIGLHDLRTRLSIIPQD----PT 1018
VL G TG+GKS ++ + IV+ G + ++G DI+ + R + +PQD P
Sbjct: 27 CVLLGPTGAGKSVFLELIAGIVKPDRGEVRLNGADITPLPPE--RRGIGFVPQDYALFPH 84
Query: 1019 MFEGTTRSNLD-PLE----EHADEQIWEALDKCQLGDEVRKKKGKLDSQG--------RV 1065
+ + N+ L D ++ E +K + + +K +L S G R
Sbjct: 85 L---SVYRNIAYGLRNVERVERDRRVREMAEKLGIAHLLDRKPARL-SGGERQRVALARA 140
Query: 1066 LLKKSKVLVLDEATASVDTATDNQIQQTLR--QHFSDCTVV----------TIAHRITSV 1113
L+ + ++L+LDE ++VD T + + LR Q D ++ +A +
Sbjct: 141 LVIQPRLLLLDEPLSAVDLKTKGVLMEELRFVQREFDVPILHVTHDLIEAAMLADEV--- 197
Query: 1114 LDSAMVLLLNHGLIKEYDSPTKLLENKSS 1142
++ +G I E +L K+
Sbjct: 198 ------AVMLNGRIVEKGKLKELFSAKNG 220
|
| >2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C Length = 249 | Back alignment and structure |
|---|
Score = 72.6 bits (179), Expect = 4e-14
Identities = 44/218 (20%), Positives = 86/218 (39%), Gaps = 38/218 (17%)
Query: 376 LRNINLKVFHGMRVAVCGTVGSGKSSCLSCILGGVPKESGIIRLCGT------------- 422
L ++ +V G + + G G+GKS+ L+ + G G I+ G
Sbjct: 16 LGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMTS-GKGSIQFAGQPLEAWSATKLALH 74
Query: 423 KAYVAQSPWIQSG-KIEENILFGKEMDRERYERVLEACSLKKDLEVLPFGDQTIIGERGI 481
+AY++Q + + + D+ R E + + L + R
Sbjct: 75 RAYLSQQQTPPFATPVWHYLTLHQ-HDKTRTELLNDVAGA---LALDDKLG------RST 124
Query: 482 N-LSGGQKQRIQIARPLYQD-------ADIFLLDDPFSPVDDHTGAHLFKFC--WVSSSK 531
N LSGG+ QR+++A + Q + LLD+P + +D + L K
Sbjct: 125 NQLSGGEWQRVRLAAVVLQITPQANPAGQLLLLDEPMNSLDVAQQSALDKILSALSQQGL 184
Query: 532 TVIYATHQVEFLPA--ADLILVIKDGKITQAGKYSDIL 567
++ ++H + A ++K GK+ +G+ ++L
Sbjct: 185 AIVMSSHDLN-HTLRHAHRAWLLKGGKMLASGRREEVL 221
|
| >2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C Length = 249 | Back alignment and structure |
|---|
Score = 60.7 bits (148), Expect = 4e-10
Identities = 36/173 (20%), Positives = 59/173 (34%), Gaps = 37/173 (21%)
Query: 963 LVLRGRTGSGKSTLIQTLFRIVESTAGHILIDGKDISLIGLHDLRTRLSIIPQDPTMFEG 1022
L L G G+GKSTL+ + + S G I G+ + L + + Q T
Sbjct: 29 LHLVGPNGAGKSTLLARMAGMT-SGKGSIQFAGQPLEAWSATKLALHRAYLSQQQTPPFA 87
Query: 1023 TT--------RSNLDPLEEHADEQI-WEALDKCQLGDEVRKKKGKLDSQG---RVLL--- 1067
T + ++ + L D++ + +L S G RV L
Sbjct: 88 TPVWHYLTLHQH---D---KTRTELLNDVAGALALDDKLGRSTNQL-SGGEWQRVRLAAV 140
Query: 1068 ---------KKSKVLVLDEATASVDTATDNQIQ--QTLRQHFSD-CTVVTIAH 1108
++L+LDE S+D A Q + L +V +H
Sbjct: 141 VLQITPQANPAGQLLLLDEPMNSLDVA--QQSALDKILSALSQQGLAIVMSSH 191
|
| >3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A* Length = 235 | Back alignment and structure |
|---|
Score = 70.6 bits (174), Expect = 1e-13
Identities = 62/219 (28%), Positives = 89/219 (40%), Gaps = 53/219 (24%)
Query: 376 LRNINLKVFHGMRVAVCGTVGSGKSSCLSCILGG--VPKESGIIRLCGTKAYVAQSP--- 430
L+N+NL + G V++ G GSGKS+ L+ I+G P G + + K
Sbjct: 21 LKNVNLNIKEGEFVSIMGPSGSGKSTMLN-IIGCLDKP-TEGEVYIDNIK--TNDLDDDE 76
Query: 431 --WIQSGKI---------------EENI-------LFGKEMDRERYERVLEACSLKKDLE 466
I+ KI EN+ G ER +R LE L+
Sbjct: 77 LTKIRRDKIGFVFQQFNLIPLLTALENVELPLIFKYRGAMSGEERRKRALEC------LK 130
Query: 467 VLPFGDQTIIGERGIN-----LSGGQKQRIQIARPLYQDADIFLLDDPFSPVDDHTGA-- 519
+ + ER N LSGGQ+QR+ IAR L + I L D P +D TG
Sbjct: 131 MA--E----LEERFANHKPNQLSGGQQQRVAIARALANNPPIILADQPTWALDSKTGEKI 184
Query: 520 -HLFKFCWVSSSKTVIYATHQVEFLPAADLILVIKDGKI 557
L K KTV+ TH + + I+ +KDG++
Sbjct: 185 MQLLKKLNEEDGKTVVVVTHDINVARFGERIIYLKDGEV 223
|
| >3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12 Length = 348 | Back alignment and structure |
|---|
Score = 71.8 bits (177), Expect = 2e-13
Identities = 65/224 (29%), Positives = 96/224 (42%), Gaps = 57/224 (25%)
Query: 376 LRNINLKVFHGMRVAVCGTVGSGKSSCLSCILGGVPKESGIIRLCGTK-----------A 424
L N++LKV G + G G+GK+ L I G +SG I L G A
Sbjct: 16 LDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHVPDSGRILLDGKDVTDLSPEKHDIA 75
Query: 425 YVAQS----PWIQSGKIEENILFGKEMDR-ERYERVLEACSLKKDLEVLPFGDQTIIGER 479
+V Q+ P + +++N+ FG M + + +RVL+ L++ D R
Sbjct: 76 FVYQNYSLFPHM---NVKKNLEFGMRMKKIKDPKRVLDTARD---LKIEHLLD------R 123
Query: 480 GIN-LSGGQKQRIQIARPLYQDADIFLLDDPFSPVD---------------DHTGAHLFK 523
LSGG++QR+ +AR L + I LLD+P S +D
Sbjct: 124 NPLTLSGGEQQRVALARALVTNPKILLLDEPLSALDPRTQENAREMLSVLHKKNKL---- 179
Query: 524 FCWVSSSKTVIYATH-QVEFLPAADLILVIKDGKITQAGKYSDI 566
TV++ TH Q E AD I V+ DGK+ Q GK +I
Sbjct: 180 --------TVLHITHDQTEARIMADRIAVVMDGKLIQVGKPEEI 215
|
| >3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron transport, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae} Length = 359 | Back alignment and structure |
|---|
Score = 71.8 bits (177), Expect = 2e-13
Identities = 56/224 (25%), Positives = 90/224 (40%), Gaps = 60/224 (26%)
Query: 376 LRNINLKVFHGMRVAVCGTVGSGKSSCLSCILGGVPKESGIIRLCGTKAYVAQSPWI--- 432
L +I+L + G + + G G GK++ L C+ G +SG I L G K +++ +
Sbjct: 20 LNDISLSLDPGEILFIIGASGCGKTTLLRCLAGFEQPDSGEISLSG-KTIFSKNTNLPVR 78
Query: 433 --------QSG------KIEENILFGKEMDR----ERYERVLEACSLKKDLEVLPFGDQT 474
Q G + NI +G + + +R+ L + L
Sbjct: 79 ERRLGYLVQEGVLFPHLTVYRNIAYGLGNGKGRTAQERQRIEAMLELTG-ISEL------ 131
Query: 475 IIGERGIN-LSGGQKQRIQIARPLYQDADIFLLDDPFSPVD---------------DHTG 518
R + LSGGQ+QR +AR L D ++ LLD+PFS +D G
Sbjct: 132 --AGRYPHELSGGQQQRAALARALAPDPELILLDEPFSALDEQLRRQIREDMIAALRANG 189
Query: 519 AHLFKFCWVSSSKTVIYATH-QVEFLPAADLILVIKDGKITQAG 561
+ ++ +H + E L AD I V+K G+I Q
Sbjct: 190 K------------SAVFVSHDREEALQYADRIAVMKQGRILQTA 221
|
| >1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12 Length = 256 | Back alignment and structure |
|---|
Score = 69.5 bits (171), Expect = 4e-13
Identities = 36/195 (18%), Positives = 86/195 (44%), Gaps = 40/195 (20%)
Query: 970 GSGKSTLIQTLFRIVESTAGHILIDGKDISLIGLHDLRTRLSIIPQDPTMFEG-TTRSNL 1028
G+GK+T ++ + +++ ++G + + GK++ H++R +S +P++ + L
Sbjct: 51 GAGKTTTLRIISTLIKPSSGIVTVFGKNVVE-EPHEVRKLISYLPEEAGAYRNMQGIEYL 109
Query: 1029 D--------PLEEHADEQIWEALDKCQLGDEVRKKKGKLDSQG--------RVLLKKSKV 1072
E +E + A + LG++++ + S+G R L+ ++
Sbjct: 110 RFVAGFYASSSSE-IEEMVERATEIAGLGEKIKDRVSTY-SKGMVRKLLIARALMVNPRL 167
Query: 1073 LVLDEATASVDTATDNQIQQTLRQHFSD-CTVV----------TIAHRITSVLDSAMVLL 1121
+LDE T+ +D ++++ L+Q + T++ + RI L
Sbjct: 168 AILDEPTSGLDVLNAREVRKILKQASQEGLTILVSSHNMLEVEFLCDRI---------AL 218
Query: 1122 LNHGLIKEYDSPTKL 1136
+++G I E + +L
Sbjct: 219 IHNGTIVETGTVEEL 233
|
| >1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12 Length = 256 | Back alignment and structure |
|---|
Score = 64.5 bits (158), Expect = 2e-11
Identities = 53/268 (19%), Positives = 94/268 (35%), Gaps = 57/268 (21%)
Query: 350 PRGNSDTAIEIID-----GSFSWDFSSPNPTLRNINLKVFHGMRVAVCGTVGSGKSSCLS 404
+ A+ + D G L+ I+ ++ G + G G+GK++ L
Sbjct: 8 HHHHHMGAVVVKDLRKRIGKK--------EILKGISFEIEEGEIFGLIGPNGAGKTTTLR 59
Query: 405 CILGGVPKESGIIRLCGTKA------------YVAQSPWIQSG-KIEENILF-------G 444
I + SGI+ + G Y+ + + E + F
Sbjct: 60 IISTLIKPSSGIVTVFGKNVVEEPHEVRKLISYLPEEAGAYRNMQGIEYLRFVAGFYASS 119
Query: 445 KEMDRERYERVLEACSLKKDLEVLPFGDQTIIGERGINLSGGQKQRIQIARPLYQDADIF 504
E ER E L + I +R S G +++ IAR L + +
Sbjct: 120 SSEIEEMVERATEIAGLGE-----------KIKDRVSTYSKGMVRKLLIARALMVNPRLA 168
Query: 505 LLDDPFSPVDDHTGAHLFKFC--WVSSSKTVIYATH---QVEFLPAADLILVIKDGKITQ 559
+LD+P S +D + K T++ ++H +VEFL D I +I +G I +
Sbjct: 169 ILDEPTSGLDVLNAREVRKILKQASQEGLTILVSSHNMLEVEFL--CDRIALIHNGTIVE 226
Query: 560 AGKYSDILNSGTD------FMELVGAHK 581
G ++ F E+V +
Sbjct: 227 TGTVEELKERYKAQNIEEVFEEVVKCSE 254
|
| >2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A Length = 224 | Back alignment and structure |
|---|
Score = 67.9 bits (167), Expect = 9e-13
Identities = 54/212 (25%), Positives = 88/212 (41%), Gaps = 40/212 (18%)
Query: 376 LRNINLKVFHGMRVAVCGTVGSGKSSCLSCILGG--VPKESGIIRLCGTKAYVAQSP--- 430
L+ I+L V G V++ G GSGKS+ L ILG P G + L G + V +
Sbjct: 20 LKGISLSVKKGEFVSIIGASGSGKSTLLY-ILGLLDAP-TEGKVFLEGKE--VDYTNEKE 75
Query: 431 --WIQSGKI---------------EENI----LFGKEMDRERYERVLEACSLKKDLEVLP 469
+++ K+ EN+ L + +E ER L L
Sbjct: 76 LSLLRNRKLGFVFQFHYLIPELTALENVIVPMLKMGKPKKEAKERGEYL------LSELG 129
Query: 470 FGDQTIIGERGINLSGGQKQRIQIARPLYQDADIFLLDDPFSPVDDHTGAHLFK-FCWVS 528
GD+ + + LSGG++QR+ IAR L + + D+P +D + F ++
Sbjct: 130 LGDK--LSRKPYELSGGEQQRVAIARALANEPILLFADEPTGNLDSANTKRVMDIFLKIN 187
Query: 529 SS-KTVIYATHQVEFLPAADLILVIKDGKITQ 559
+++ TH+ E L +KDGK+
Sbjct: 188 EGGTSIVMVTHERELAELTHRTLEMKDGKVVG 219
|
| >1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A* Length = 353 | Back alignment and structure |
|---|
Score = 67.7 bits (166), Expect = 5e-12
Identities = 52/228 (22%), Positives = 87/228 (38%), Gaps = 49/228 (21%)
Query: 374 PTLRNINLKVFHGMRVAVCGTVGSGKSSCLSCILGGVPKESGIIRLCGTKAYVAQSPWIQ 433
L N+N+ + +G R + G G+GK++ + I G +G + +
Sbjct: 19 VALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPSTGELYFDDRLVASNGKLIVP 78
Query: 434 SGK-----------------IEENILFG----KEMDRERYERVLEACSLKKDLEVLPFGD 472
ENI F K E +RV E + L++ +
Sbjct: 79 PEDRKIGMVFQTWALYPNLTAFENIAFPLTNMKMSKEEIRKRVEEVAKI---LDIHHVLN 135
Query: 473 QTIIGERGINLSGGQKQRIQIARPLYQDADIFLLDDPFSPVD----DHTGAHLFKFCWVS 528
LSG Q+QR+ +AR L +D + LLD+PFS +D D A +
Sbjct: 136 H-----FPRELSGAQQQRVALARALVKDPSLLLLDEPFSNLDARMRDSARALV------- 183
Query: 529 SSK-------TVIYATH-QVEFLPAADLILVIKDGKITQAGKYSDILN 568
+ T++ +H + AD + V+ GK+ Q GK D+ +
Sbjct: 184 -KEVQSRLGVTLLVVSHDPADIFAIADRVGVLVKGKLVQVGKPEDLYD 230
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 69.5 bits (169), Expect = 6e-12
Identities = 108/796 (13%), Positives = 204/796 (25%), Gaps = 318/796 (39%)
Query: 217 FQDKFMETKDRRIKATSEILRNMRILKLQGWELKKNETAWLKKSVYTEAMISFFCWGAPT 276
F+D F+ + K ++ +++ L K ++S
Sbjct: 25 FEDAFV--DNFDCKDVQDMPKSI-----------------LSKEEIDHIIMS------KD 59
Query: 277 FVSVVTFGSCILLGIPLESGMILSALTTF--KILQEPIYYLPESISMMIQAKVPLDRIAS 334
VS L L + F ++L+ +L I + + P
Sbjct: 60 AVSGTLR----LFWTLLSKQE--EMVQKFVEEVLRINYKFLMSPIK--TEQRQPSMMTRM 111
Query: 335 FL-CLEGLQTD--VLEKM--PRGNSDTAIEIIDGSFSWDFSSPNPTLRNINLKVFHGMRV 389
++ + L D V K R ++ LR L++ V
Sbjct: 112 YIEQRDRLYNDNQVFAKYNVSR------LQPYL------------KLRQALLELRPAKNV 153
Query: 390 AVCGTVGSGKSSCLSCILGGVPKESGIIRLCGTKAYVAQSPWIQSGKIEENILFGKEMDR 449
+ G +GSGK + + V + K + W+
Sbjct: 154 LIDGVLGSGK----TWVALDVCLSYKVQCKMDFKIF-----WLNLKNCNS--------PE 196
Query: 450 ERYERVLEACS-LKKDLEVLPFGDQTIIGERGINLSGGQKQRIQIARPLYQDADIFLLDD 508
E + + + + I + I+ + +R+ ++P Y++ LL
Sbjct: 197 TVLEMLQKLLYQIDPNWTSRSDHSSNI--KLRIHSIQAELRRLLKSKP-YENC---LLV- 249
Query: 509 PFSPVDDHTGAHLFKFCWVSSSKTVIYATHQVEFLPAADL---ILVI-KDGKITQAGKYS 564
+ + V ++K A +L IL+ + ++T
Sbjct: 250 ----LLN-----------VQNAKAW----------NAFNLSCKILLTTRFKQVT------ 278
Query: 565 DILNSGTDFMELVGAHKQALSGLDSIDRGPVSERKSINKENDGTSTTNEIVNKEENKNFQ 624
D L++ T + S++ + + +E K+
Sbjct: 279 DFLSAAT------------------------TTHISLDHHSMT-------LTPDEVKSLL 307
Query: 625 SD----DEAALPKGQLVQEEEREKGKVGFSVYWKYMTTAYGGVLVPFILLAQIIFQIFQI 680
LP RE P L II + +
Sbjct: 308 LKYLDCRPQDLP---------REVLTTN-----------------PRRL--SIIAESIRD 339
Query: 681 GSNYWMAWATPVAKDVNPAVGASTLIIVYVGAGYKTATQLFNKMHVCIFRAPMYFFDSTP 740
G W W + + +S + V A Y+ ++F+++ +F
Sbjct: 340 GLATWDNWKHVNCDKLTTIIESS--LNVLEPAEYR---KMFDRL--SVFP---------- 382
Query: 741 SGRILNRVSENVKWADQSAADMDIPYDIGAFAFSMIQLLGIIVVMSLVAWQVLIVFVP-V 799
+ IP LL +I W +I V
Sbjct: 383 ---------PSAH----------IP----------TILLSLI-------WFDVIKSDVMV 406
Query: 800 IATFIWYQQYYITSTRELSRLIGVCKAPVIQQFSETISGSTTIRSLDQELRFRDTNM--- 856
+ +L + + V +Q E + +I S+ EL+ + N
Sbjct: 407 VVN-------------KLHK-----YSLVEKQPKE---STISIPSIYLELKVKLENEYAL 445
Query: 857 --KLIDEYSRPK---------------------FHIAGAMEWLRFCIDMLSSITFAFSLA 893
++D Y+ PK H+ R + + F
Sbjct: 446 HRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERM--TLFRMV-F-LDFR 501
Query: 894 FLISVPNGIIHPYKNLERKIISVERILQCACIPSEPALV--------IEATKPNNSR--- 942
F LE+KI + A L I P R
Sbjct: 502 F--------------LEQKIRH-DSTAWNASGSILNTLQQLKFYKPYICDNDPKYERLVN 546
Query: 943 ------PSHGEVNIRH 952
P E I
Sbjct: 547 AILDFLPKIEENLICS 562
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 58.7 bits (141), Expect = 1e-08
Identities = 54/338 (15%), Positives = 104/338 (30%), Gaps = 88/338 (26%)
Query: 852 RDTNMKLIDEYSRPKF------HIAG---AMEWLRFCIDML----SSITFAF---SLA-- 893
+ + K + + + HI A+ L + F L
Sbjct: 31 DNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRIN 90
Query: 894 --FLIS-VPNGIIHPYKNLERKIISVERILQCACIPSEPALVIEATKPNNSRPSHGEVNI 950
FL+S + P I +R+ ++ + K N SR + +
Sbjct: 91 YKFLMSPIKTEQRQPSMMTRMYIEQRDRLY------NDNQVF---AKYNVSRLQP-YLKL 140
Query: 951 RH--LQVRYAPNLPLVLRGRTGSGKSTL-IQTL--FRIVESTAGHIL-ID-GKDIS---- 999
R L++R A N+ ++ G GSGK+ + + +++ I ++ S
Sbjct: 141 RQALLELRPAKNV--LIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETV 198
Query: 1000 LIGLHDLRTRLSIIPQDPTMFEGTTRSNLDPLEEHADEQIWEALDKCQLGDEVRKKKGKL 1059
L L L ++ DP + S+ L H+ + +L ++ K +
Sbjct: 199 LEMLQKLLYQI-----DPNWTSRSDHSSNIKLRIHSIQA--------ELRRLLKSKPYE- 244
Query: 1060 DSQGRVLLKKSKVLVLDEATASVDTATDNQIQQTLRQHFS-DC-TVVTIAHRITSVLDSA 1117
L LVL + Q + F+ C ++T R V D
Sbjct: 245 ----NCL------LVLL----------NVQNAKAWN-AFNLSCKILLTT--RFKQVTDFL 281
Query: 1118 MVLLLNHGLIKEYDSPTKLLENKSSSFAQLVAEYTSSS 1155
H + + L ++ L+ +Y
Sbjct: 282 SAATTTHISLDHHSMT--LTPDEV---KSLLLKYLDCR 314
|
| >2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii} Length = 362 | Back alignment and structure |
|---|
Score = 62.2 bits (152), Expect = 3e-10
Identities = 63/230 (27%), Positives = 91/230 (39%), Gaps = 72/230 (31%)
Query: 374 PTLRNINLKVFHGMRVAVCGTVGSGKSSCLSCI------------LGGV------PKESG 415
L NINLK+ G +A+ G GSGKS+ L I PK+
Sbjct: 17 TALNNINLKIKDGEFMALLGPSGSGKSTLLYTIAGIYKPTSGKIYFDEKDVTELPPKDRN 76
Query: 416 IIRLCGTKAYVAQS----PWIQSGKIEENILFG----KEMDRERYERVLEACSLKKDLEV 467
+ V Q+ P + + +NI F K E ++V E + L +
Sbjct: 77 V-------GLVFQNWALYPHM---TVYKNIAFPLELRKAPREEIDKKVREVAKM---LHI 123
Query: 468 LPFGDQTIIGERGINLSGGQKQRIQIARPLYQDADIFLLDDPFSPVD------------- 514
++ LSGGQ+QR+ IAR L ++ ++ LLD+P S +D
Sbjct: 124 DKLLNR-----YPWQLSGGQQQRVAIARALVKEPEVLLLDEPLSNLDALLRLEVRAELKR 178
Query: 515 --DHTGAHLFKFCWVSSSKTVIYATH-QVEFLPAADLILVIKDGKITQAG 561
G T +Y TH Q E L AD I VI++G+I Q G
Sbjct: 179 LQKELGI------------TTVYVTHDQAEALAMADRIAVIREGEILQVG 216
|
| >2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J* Length = 263 | Back alignment and structure |
|---|
Score = 59.9 bits (146), Expect = 8e-10
Identities = 43/171 (25%), Positives = 67/171 (39%), Gaps = 51/171 (29%)
Query: 376 LRNINLKVFHGMRVAVCGTVGSGKSSCLSCILGGVPKESGIIRLCGTKAYVAQSPWIQSG 435
L+ IN+ + G V V G GSGKS+ L C+ + G I + G
Sbjct: 40 LKGINVHIREGEVVVVIGPSGSGKSTFLRCLNLLEDFDEGEIIIDGI------------- 86
Query: 436 KIEENILFGKEMDRERYE--------------RVLEACSL--------------KKDLEV 467
++ +++ R E VL +L K +E+
Sbjct: 87 NLKAK---DTNLNKVREEVGMVFQRFNLFPHMTVLNNITLAPMKVRKWPREKAEAKAMEL 143
Query: 468 LPFGDQTIIGERG----INLSGGQKQRIQIARPLYQDADIFLLDDPFSPVD 514
L D+ + ++ +LSGGQ QR+ IAR L + I L D+P S +D
Sbjct: 144 L---DKVGLKDKAHAYPDSLSGGQAQRVAIARALAMEPKIMLFDEPTSALD 191
|
| >2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J* Length = 263 | Back alignment and structure |
|---|
Score = 46.8 bits (112), Expect = 2e-05
Identities = 41/143 (28%), Positives = 68/143 (47%), Gaps = 26/143 (18%)
Query: 963 LVLRGRTGSGKSTLIQTLFRIVESTAGHILIDGKDIS--LIGLHDLRTRLSIIPQD---- 1016
+V+ G +GSGKST ++ L + + G I+IDG ++ L+ +R + ++ Q
Sbjct: 53 VVVIGPSGSGKSTFLRCLNLLEDFDEGEIIIDGINLKAKDTNLNKVREEVGMVFQRFNLF 112
Query: 1017 PTMFEGTTRSN--LDPL------EEHADEQIWEALDKCQLGDEVRKKKGKLDSQG----- 1063
P M T +N L P+ E A+ + E LDK L D+ L S G
Sbjct: 113 PHM---TVLNNITLAPMKVRKWPREKAEAKAMELLDKVGLKDKAHAYPDSL-SGGQAQRV 168
Query: 1064 ---RVLLKKSKVLVLDEATASVD 1083
R L + K+++ DE T+++D
Sbjct: 169 AIARALAMEPKIMLFDEPTSALD 191
|
| >2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima} Length = 359 | Back alignment and structure |
|---|
Score = 58.8 bits (143), Expect = 5e-09
Identities = 40/145 (27%), Positives = 56/145 (38%), Gaps = 40/145 (27%)
Query: 437 IEENILFGKEMDR----ERYERVLEACSLKKDLEVLPFGDQTIIGERGINLSGGQKQRIQ 492
+ ENI F R E +RV+E L + D+ + LSGGQ+QR+
Sbjct: 92 VFENIAFPLRARRISKDEVEKRVVEIARK---LLIDNLLDR-----KPTQLSGGQQQRVA 143
Query: 493 IARPLYQDADIFLLDDPFSPVD---------------DHTGAHLFKFCWVSSSKTVIYAT 537
+AR L + + L D+P S +D G T +Y T
Sbjct: 144 LARALVKQPKVLLFDEPLSNLDANLRMIMRAEIKHLQQELGI------------TSVYVT 191
Query: 538 H-QVEFLPAADLILVIKDGKITQAG 561
H Q E + A I V GK+ Q G
Sbjct: 192 HDQAEAMTMASRIAVFNQGKLVQYG 216
|
| >1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A* Length = 372 | Back alignment and structure |
|---|
Score = 58.0 bits (141), Expect = 7e-09
Identities = 42/141 (29%), Positives = 62/141 (43%), Gaps = 32/141 (22%)
Query: 437 IEENILFG----KEMDRERYERVLEACSLKKDLEVLPFGDQTIIGERGINLSGGQKQRIQ 492
+ ENI F K E +RV A L L++ ++ LSGGQ+QR+
Sbjct: 100 VYENIAFPLKIKKFPKDEIDKRVRWAAEL---LQIEELLNR-----YPAQLSGGQRQRVA 151
Query: 493 IARPLYQDADIFLLDDPFSPVD----DHTGAHLFKFCWVSSSK-------TVIYATH-QV 540
+AR + + D+ L+D+P S +D A + K T IY TH QV
Sbjct: 152 VARAIVVEPDVLLMDEPLSNLDAKLRVAMRAEI--------KKLQQKLKVTTIYVTHDQV 203
Query: 541 EFLPAADLILVIKDGKITQAG 561
E + D I V+ G++ Q G
Sbjct: 204 EAMTMGDRIAVMNRGQLLQIG 224
|
| >1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A Length = 372 | Back alignment and structure |
|---|
Score = 57.2 bits (139), Expect = 1e-08
Identities = 41/139 (29%), Positives = 60/139 (43%), Gaps = 32/139 (23%)
Query: 439 ENILFG----KEMDRERYERVLEACSLKKDLEVLPFGDQTIIGERGINLSGGQKQRIQIA 494
+NI F K +E +RV E L L + ++ + LSGGQ+QR+ +
Sbjct: 100 DNIAFPLKLRKVPRQEIDQRVREVAEL---LGLTELLNR-----KPRELSGGQRQRVALG 151
Query: 495 RPLYQDADIFLLDDPFSPVD----DHTGAHLFKFCWVSSSK-------TVIYATH-QVEF 542
R + + +FL+D+P S +D A L K T IY TH QVE
Sbjct: 152 RAIVRKPQVFLMDEPLSNLDAKLRVRMRAEL--------KKLQRQLGVTTIYVTHDQVEA 203
Query: 543 LPAADLILVIKDGKITQAG 561
+ D I V+ G + Q G
Sbjct: 204 MTMGDRIAVMNRGVLQQVG 222
|
| >3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C Length = 366 | Back alignment and structure |
|---|
Score = 55.8 bits (135), Expect = 4e-08
Identities = 54/205 (26%), Positives = 96/205 (46%), Gaps = 29/205 (14%)
Query: 967 GRTGSGKSTLIQTLFRIVESTAGHILIDGKDISLIGLHDLRT-RLSI--IPQDPTMFEG- 1022
G +G+GKSTLI+ + + T G +L+DG++++ + +L R I I Q +
Sbjct: 61 GASGAGKSTLIRCVNLLERPTEGSVLVDGQELTTLSESELTKARRQIGMIFQHFNLLSSR 120
Query: 1023 TTRSNLD-PLE------EHADEQIWEALDKCQLGDEVRKKKGKLDSQG--------RVLL 1067
T N+ PLE + ++ E L LGD+ L S G R L
Sbjct: 121 TVFGNVALPLELDNTPKDEVKRRVTELLSLVGLGDKHDSYPSNL-SGGQKQRVAIARALA 179
Query: 1068 KKSKVLVLDEATASVDTATDNQIQQTLR---QHFSDCTVVTIAHR---ITSVLDSAMVLL 1121
KVL+ D+AT+++D AT I + L+ + T++ I H + + D V +
Sbjct: 180 SNPKVLLCDQATSALDPATTRSILELLKDINRRL-GLTILLITHEMDVVKRICDC--VAV 236
Query: 1122 LNHGLIKEYDSPTKLLENKSSSFAQ 1146
+++G + E D+ +++ + + AQ
Sbjct: 237 ISNGELIEQDTVSEVFSHPKTPLAQ 261
|
| >3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C Length = 366 | Back alignment and structure |
|---|
Score = 45.4 bits (108), Expect = 8e-05
Identities = 28/89 (31%), Positives = 45/89 (50%), Gaps = 4/89 (4%)
Query: 482 NLSGGQKQRIQIARPLYQDADIFLLDDPFSPVDDHTGA---HLFKFCWVSSSKTVIYATH 538
NLSGGQKQR+ IAR L + + L D S +D T L K T++ TH
Sbjct: 163 NLSGGQKQRVAIARALASNPKVLLCDQATSALDPATTRSILELLKDINRRLGLTILLITH 222
Query: 539 QVEFLPA-ADLILVIKDGKITQAGKYSDI 566
+++ + D + VI +G++ + S++
Sbjct: 223 EMDVVKRICDCVAVISNGELIEQDTVSEV 251
|
| >1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12 Length = 262 | Back alignment and structure |
|---|
Score = 54.5 bits (132), Expect = 5e-08
Identities = 42/172 (24%), Positives = 70/172 (40%), Gaps = 41/172 (23%)
Query: 376 LRNINLKVFHGMRVAVCGTVGSGKSSCLSCILGGVPKESGIIRLCGTKAYVAQSPWIQSG 435
L+ ++L+ G +++ G+ GSGKS+ L CI G I + G + + Q
Sbjct: 22 LKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEKPSEGAIIVNGQNINLVRDKDGQLK 81
Query: 436 KIEENILFGKEMDRERYE--------------RVLEACSL--------------KKDLEV 467
++ ++ R VLE ++ L+
Sbjct: 82 VADK-----NQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVLGLSKHDARERALKY 136
Query: 468 LPFGDQTIIGERG-----INLSGGQKQRIQIARPLYQDADIFLLDDPFSPVD 514
L + I ER ++LSGGQ+QR+ IAR L + D+ L D+P S +D
Sbjct: 137 L---AKVGIDERAQGKYPVHLSGGQQQRVSIARALAMEPDVLLFDEPTSALD 185
|
| >3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A Length = 381 | Back alignment and structure |
|---|
Score = 52.9 bits (128), Expect = 3e-07
Identities = 34/96 (35%), Positives = 46/96 (47%), Gaps = 28/96 (29%)
Query: 483 LSGGQKQRIQIARPLYQDADIFLLDDPFSPVD---------------DHTGAHLFKFCWV 527
LSGGQ+QR+ I R L + +FLLD+P S +D G
Sbjct: 134 LSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKRLGR-------- 185
Query: 528 SSSKTVIYATH-QVEFLPAADLILVIKDGKITQAGK 562
T+IY TH QVE + AD I+V+ G++ Q GK
Sbjct: 186 ----TMIYVTHDQVEAMTLADKIVVLDAGRVAQVGK 217
|
| >1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12 Length = 240 | Back alignment and structure |
|---|
Score = 50.9 bits (123), Expect = 6e-07
Identities = 41/162 (25%), Positives = 66/162 (40%), Gaps = 45/162 (27%)
Query: 376 LRNINLKVFHGMRVAVCGTVGSGKSSCLSCILGGVPKESGIIRLCGT-----------KA 424
++ I+LKV G V + G G+GK++ LS I G V + G I G +
Sbjct: 22 IKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQKGKIIFNGQDITNKPAHVINRM 81
Query: 425 YVAQSPWIQSGK-------IEENILFG------KEMDRERYERVLEACSLKKDLEVLPFG 471
+A P G+ + EN++ G KE + E + + P
Sbjct: 82 GIALVP---EGRRIFPELTVYENLMMGAYNRKDKEGIKRDLEWI---------FSLFP-- 127
Query: 472 DQTIIGER----GINLSGGQKQRIQIARPLYQDADIFLLDDP 509
+ ER G LSGG++Q + I R L + ++D+P
Sbjct: 128 ---RLKERLKQLGGTLSGGEQQMLAIGRALMSRPKLLMMDEP 166
|
| >3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B Length = 339 | Back alignment and structure |
|---|
Score = 45.8 bits (108), Expect = 5e-05
Identities = 24/135 (17%), Positives = 43/135 (31%), Gaps = 17/135 (12%)
Query: 436 KIEENILFGKEMDRERYERVLEACSLKKDLEV----LPFGDQTIIGERGIN-----LSGG 486
E + + K EV + + G LSGG
Sbjct: 193 YKALAREAALSKIGELASEIFAEFTEGKYSEVVVRAEENKVRLFVVWEGKERPLTFLSGG 252
Query: 487 QKQRIQIA------RPLYQDADIFLLDDPFSPVDDHTGAHLFKFC--WVSSSKTVIYATH 538
++ + +A L + + +LD+P +D+ L ++ VI +H
Sbjct: 253 ERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLKKIPQVILVSH 312
Query: 539 QVEFLPAADLILVIK 553
E AAD ++ I
Sbjct: 313 DEELKDAADHVIRIS 327
|
Structure Templates Detected by HHsearch 
Original result of HHsearch against PDB70 database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 1156 | |||
| 4f4c_A | 1321 | Multidrug resistance protein PGP-1; ABC transporte | 100.0 | |
| 3g5u_A | 1284 | MCG1178, multidrug resistance protein 1A; P-glycop | 100.0 | |
| 4a82_A | 578 | Cystic fibrosis transmembrane conductance regulat; | 100.0 | |
| 3qf4_A | 587 | ABC transporter, ATP-binding protein; multidrug tr | 100.0 | |
| 3qf4_B | 598 | Uncharacterized ABC transporter ATP-binding prote | 100.0 | |
| 3b5x_A | 582 | Lipid A export ATP-binding/permease protein MSBA; | 100.0 | |
| 3b60_A | 582 | Lipid A export ATP-binding/permease protein MSBA; | 100.0 | |
| 2yl4_A | 595 | ATP-binding cassette SUB-family B member 10, mitoc | 100.0 | |
| 4f4c_A | 1321 | Multidrug resistance protein PGP-1; ABC transporte | 100.0 | |
| 3qf4_B | 598 | Uncharacterized ABC transporter ATP-binding prote | 100.0 | |
| 3qf4_A | 587 | ABC transporter, ATP-binding protein; multidrug tr | 100.0 | |
| 3b5x_A | 582 | Lipid A export ATP-binding/permease protein MSBA; | 100.0 | |
| 3b60_A | 582 | Lipid A export ATP-binding/permease protein MSBA; | 100.0 | |
| 4a82_A | 578 | Cystic fibrosis transmembrane conductance regulat; | 100.0 | |
| 2yl4_A | 595 | ATP-binding cassette SUB-family B member 10, mitoc | 100.0 | |
| 3g5u_A | 1284 | MCG1178, multidrug resistance protein 1A; P-glycop | 100.0 | |
| 3bk7_A | 607 | ABC transporter ATP-binding protein; ABC ATPase, i | 100.0 | |
| 2iw3_A | 986 | Elongation factor 3A; acetylation, ATP-binding, pr | 100.0 | |
| 1yqt_A | 538 | RNAse L inhibitor; ATP-binding cassette, ribosome | 100.0 | |
| 3ux8_A | 670 | Excinuclease ABC, A subunit; UVRA, nucleotide exci | 100.0 | |
| 3nh6_A | 306 | ATP-binding cassette SUB-family B member 6, mitoc; | 100.0 | |
| 3ozx_A | 538 | RNAse L inhibitor; ATP binding cassette protein, h | 100.0 | |
| 3j16_B | 608 | RLI1P; ribosome recycling, translation, eukarya, r | 100.0 | |
| 3nh6_A | 306 | ATP-binding cassette SUB-family B member 6, mitoc; | 100.0 | |
| 2pze_A | 229 | Cystic fibrosis transmembrane conductance regulat; | 100.0 | |
| 2cbz_A | 237 | Multidrug resistance-associated protein 1; ABC pro | 100.0 | |
| 2ff7_A | 247 | Alpha-hemolysin translocation ATP-binding protein | 100.0 | |
| 2ghi_A | 260 | Transport protein; multidrug resistance protein, M | 100.0 | |
| 1mv5_A | 243 | LMRA, multidrug resistance ABC transporter ATP-bin | 100.0 | |
| 2ixe_A | 271 | Antigen peptide transporter 1; ABC ATPase, hydrola | 100.0 | |
| 3gd7_A | 390 | Fusion complex of cystic fibrosis transmembrane co | 100.0 | |
| 2bbs_A | 290 | Cystic fibrosis transmembrane conductance regulato | 100.0 | |
| 3gfo_A | 275 | Cobalt import ATP-binding protein CBIO 1; structur | 100.0 | |
| 3tui_C | 366 | Methionine import ATP-binding protein METN; ABC-tr | 100.0 | |
| 3tif_A | 235 | Uncharacterized ABC transporter ATP-binding prote; | 100.0 | |
| 3fvq_A | 359 | Fe(3+) IONS import ATP-binding protein FBPC; nucle | 100.0 | |
| 3rlf_A | 381 | Maltose/maltodextrin import ATP-binding protein M; | 100.0 | |
| 2olj_A | 263 | Amino acid ABC transporter; ABC domain, ATPase, hy | 100.0 | |
| 2pcj_A | 224 | ABC transporter, lipoprotein-releasing system ATP- | 100.0 | |
| 1ji0_A | 240 | ABC transporter; ATP binding protein, structural g | 100.0 | |
| 4g1u_C | 266 | Hemin import ATP-binding protein HMUV; membrane tr | 100.0 | |
| 1g6h_A | 257 | High-affinity branched-chain amino acid transport | 100.0 | |
| 2yz2_A | 266 | Putative ABC transporter ATP-binding protein TM_0; | 100.0 | |
| 1b0u_A | 262 | Histidine permease; ABC transporter, transport pro | 100.0 | |
| 1vpl_A | 256 | ABC transporter, ATP-binding protein; TM0544, stru | 100.0 | |
| 1z47_A | 355 | CYSA, putative ABC-transporter ATP-binding protein | 100.0 | |
| 2yyz_A | 359 | Sugar ABC transporter, ATP-binding protein; sugar | 100.0 | |
| 2it1_A | 362 | 362AA long hypothetical maltose/maltodextrin trans | 100.0 | |
| 1v43_A | 372 | Sugar-binding transport ATP-binding protein; ATPas | 100.0 | |
| 3d31_A | 348 | Sulfate/molybdate ABC transporter, ATP-binding pro | 100.0 | |
| 2onk_A | 240 | Molybdate/tungstate ABC transporter, ATP-binding p | 100.0 | |
| 1oxx_K | 353 | GLCV, glucose, ABC transporter, ATP binding protei | 100.0 | |
| 2nq2_C | 253 | Hypothetical ABC transporter ATP-binding protein H | 100.0 | |
| 2vf7_A | 842 | UVRA2, excinuclease ABC, subunit A.; DNA-binding p | 100.0 | |
| 2ihy_A | 279 | ABC transporter, ATP-binding protein; ATPase, ABC | 100.0 | |
| 1g29_1 | 372 | MALK, maltose transport protein MALK; ATPase, acti | 100.0 | |
| 2ff7_A | 247 | Alpha-hemolysin translocation ATP-binding protein | 100.0 | |
| 2pjz_A | 263 | Hypothetical protein ST1066; ATP binding protein, | 100.0 | |
| 2qi9_C | 249 | Vitamin B12 import ATP-binding protein BTUD; inner | 100.0 | |
| 3pih_A | 916 | Uvrabc system protein A; hydrolase, ABC ATPase, DN | 100.0 | |
| 2d2e_A | 250 | SUFC protein; ABC-ATPase, SUF protein, 310-helix, | 100.0 | |
| 2zu0_C | 267 | Probable ATP-dependent transporter SUFC; iron-sulf | 100.0 | |
| 1sgw_A | 214 | Putative ABC transporter; structural genomics, P p | 100.0 | |
| 2ghi_A | 260 | Transport protein; multidrug resistance protein, M | 100.0 | |
| 1mv5_A | 243 | LMRA, multidrug resistance ABC transporter ATP-bin | 100.0 | |
| 3gd7_A | 390 | Fusion complex of cystic fibrosis transmembrane co | 100.0 | |
| 2ixe_A | 271 | Antigen peptide transporter 1; ABC ATPase, hydrola | 100.0 | |
| 2r6f_A | 972 | Excinuclease ABC subunit A; UVRA, nucleotide excis | 100.0 | |
| 2ygr_A | 993 | Uvrabc system protein A; hydrolase, nucleotide exc | 100.0 | |
| 3tui_C | 366 | Methionine import ATP-binding protein METN; ABC-tr | 100.0 | |
| 3gfo_A | 275 | Cobalt import ATP-binding protein CBIO 1; structur | 100.0 | |
| 3tif_A | 235 | Uncharacterized ABC transporter ATP-binding prote; | 100.0 | |
| 2cbz_A | 237 | Multidrug resistance-associated protein 1; ABC pro | 100.0 | |
| 2olj_A | 263 | Amino acid ABC transporter; ABC domain, ATPase, hy | 100.0 | |
| 4g1u_C | 266 | Hemin import ATP-binding protein HMUV; membrane tr | 100.0 | |
| 2pze_A | 229 | Cystic fibrosis transmembrane conductance regulat; | 100.0 | |
| 3fvq_A | 359 | Fe(3+) IONS import ATP-binding protein FBPC; nucle | 100.0 | |
| 2onk_A | 240 | Molybdate/tungstate ABC transporter, ATP-binding p | 100.0 | |
| 1vpl_A | 256 | ABC transporter, ATP-binding protein; TM0544, stru | 100.0 | |
| 1b0u_A | 262 | Histidine permease; ABC transporter, transport pro | 100.0 | |
| 1ji0_A | 240 | ABC transporter; ATP binding protein, structural g | 100.0 | |
| 3rlf_A | 381 | Maltose/maltodextrin import ATP-binding protein M; | 100.0 | |
| 2yz2_A | 266 | Putative ABC transporter ATP-binding protein TM_0; | 100.0 | |
| 2qi9_C | 249 | Vitamin B12 import ATP-binding protein BTUD; inner | 100.0 | |
| 2yyz_A | 359 | Sugar ABC transporter, ATP-binding protein; sugar | 100.0 | |
| 1g6h_A | 257 | High-affinity branched-chain amino acid transport | 100.0 | |
| 1v43_A | 372 | Sugar-binding transport ATP-binding protein; ATPas | 100.0 | |
| 1z47_A | 355 | CYSA, putative ABC-transporter ATP-binding protein | 100.0 | |
| 2ihy_A | 279 | ABC transporter, ATP-binding protein; ATPase, ABC | 100.0 | |
| 3d31_A | 348 | Sulfate/molybdate ABC transporter, ATP-binding pro | 100.0 | |
| 2pcj_A | 224 | ABC transporter, lipoprotein-releasing system ATP- | 100.0 | |
| 2it1_A | 362 | 362AA long hypothetical maltose/maltodextrin trans | 100.0 | |
| 1oxx_K | 353 | GLCV, glucose, ABC transporter, ATP binding protei | 100.0 | |
| 2d2e_A | 250 | SUFC protein; ABC-ATPase, SUF protein, 310-helix, | 100.0 | |
| 1g29_1 | 372 | MALK, maltose transport protein MALK; ATPase, acti | 100.0 | |
| 3bk7_A | 607 | ABC transporter ATP-binding protein; ABC ATPase, i | 99.98 | |
| 2pjz_A | 263 | Hypothetical protein ST1066; ATP binding protein, | 99.98 | |
| 2zu0_C | 267 | Probable ATP-dependent transporter SUFC; iron-sulf | 99.98 | |
| 1yqt_A | 538 | RNAse L inhibitor; ATP-binding cassette, ribosome | 99.98 | |
| 2bbs_A | 290 | Cystic fibrosis transmembrane conductance regulato | 99.98 | |
| 3ozx_A | 538 | RNAse L inhibitor; ATP binding cassette protein, h | 99.97 | |
| 2iw3_A | 986 | Elongation factor 3A; acetylation, ATP-binding, pr | 99.97 | |
| 2nq2_C | 253 | Hypothetical ABC transporter ATP-binding protein H | 99.97 | |
| 3j16_B | 608 | RLI1P; ribosome recycling, translation, eukarya, r | 99.97 | |
| 1sgw_A | 214 | Putative ABC transporter; structural genomics, P p | 99.97 | |
| 2v9p_A | 305 | Replication protein E1; AAA+ molecular motor, DNA | 99.96 | |
| 3ux8_A | 670 | Excinuclease ABC, A subunit; UVRA, nucleotide exci | 99.95 | |
| 1tf7_A | 525 | KAIC; homohexamer, hexamer, circadian clock protei | 99.94 | |
| 3pih_A | 916 | Uvrabc system protein A; hydrolase, ABC ATPase, DN | 99.94 | |
| 2vf7_A | 842 | UVRA2, excinuclease ABC, subunit A.; DNA-binding p | 99.93 | |
| 2npi_A | 460 | Protein CLP1; CLP1-PCF11 complex, ATP binding, ter | 99.93 | |
| 2r6f_A | 972 | Excinuclease ABC subunit A; UVRA, nucleotide excis | 99.93 | |
| 2ygr_A | 993 | Uvrabc system protein A; hydrolase, nucleotide exc | 99.93 | |
| 4aby_A | 415 | DNA repair protein RECN; hydrolase, double strand | 99.92 | |
| 2v9p_A | 305 | Replication protein E1; AAA+ molecular motor, DNA | 99.9 | |
| 1e69_A | 322 | Chromosome segregation SMC protein; structural mai | 99.88 | |
| 3b85_A | 208 | Phosphate starvation-inducible protein; PHOH2, ATP | 99.87 | |
| 3qf7_A | 365 | RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1. | 99.87 | |
| 4gp7_A | 171 | Metallophosphoesterase; polynucleotide kinase phos | 99.86 | |
| 4aby_A | 415 | DNA repair protein RECN; hydrolase, double strand | 99.84 | |
| 2npi_A | 460 | Protein CLP1; CLP1-PCF11 complex, ATP binding, ter | 99.83 | |
| 1ye8_A | 178 | Protein THEP1, hypothetical UPF0334 kinase-like pr | 99.83 | |
| 1tq4_A | 413 | IIGP1, interferon-inducible GTPase; interferon gam | 99.83 | |
| 2pt7_A | 330 | CAG-ALFA; ATPase, protein-protein complex, type IV | 99.81 | |
| 1z6g_A | 218 | Guanylate kinase; structural genomics, SGC, struct | 99.8 | |
| 3aez_A | 312 | Pantothenate kinase; transferase, homodimer, COA b | 99.8 | |
| 3b85_A | 208 | Phosphate starvation-inducible protein; PHOH2, ATP | 99.79 | |
| 2dpy_A | 438 | FLII, flagellum-specific ATP synthase; beta barrel | 99.77 | |
| 2o5v_A | 359 | DNA replication and repair protein RECF; ABC ATPas | 99.76 | |
| 3b9q_A | 302 | Chloroplast SRP receptor homolog, alpha subunit CP | 99.75 | |
| 1e69_A | 322 | Chromosome segregation SMC protein; structural mai | 99.74 | |
| 1lvg_A | 198 | Guanylate kinase, GMP kinase; transferase; HET: AD | 99.74 | |
| 3sop_A | 270 | Neuronal-specific septin-3; hydrolase; HET: GDP; 2 | 99.74 | |
| 1z6g_A | 218 | Guanylate kinase; structural genomics, SGC, struct | 99.74 | |
| 3qkt_A | 339 | DNA double-strand break repair RAD50 ATPase; RECA- | 99.72 | |
| 2og2_A | 359 | Putative signal recognition particle receptor; nuc | 99.71 | |
| 1znw_A | 207 | Guanylate kinase, GMP kinase; ATP:GMP-phosphotrans | 99.7 | |
| 2o8b_B | 1022 | DNA mismatch repair protein MSH6; DNA damage respo | 99.69 | |
| 2obl_A | 347 | ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O | 99.68 | |
| 1tf7_A | 525 | KAIC; homohexamer, hexamer, circadian clock protei | 99.67 | |
| 2eyu_A | 261 | Twitching motility protein PILT; pilus retraction | 99.66 | |
| 1znw_A | 207 | Guanylate kinase, GMP kinase; ATP:GMP-phosphotrans | 99.66 | |
| 2pt7_A | 330 | CAG-ALFA; ATPase, protein-protein complex, type IV | 99.66 | |
| 3thx_A | 934 | DNA mismatch repair protein MSH2; ABC family ATPas | 99.66 | |
| 2i3b_A | 189 | HCR-ntpase, human cancer-related ntpase; AAA, ross | 99.65 | |
| 3qf7_A | 365 | RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1. | 99.64 | |
| 1ye8_A | 178 | Protein THEP1, hypothetical UPF0334 kinase-like pr | 99.64 | |
| 1f2t_B | 148 | RAD50 ABC-ATPase; DNA double-strand break repair, | 99.63 | |
| 3sop_A | 270 | Neuronal-specific septin-3; hydrolase; HET: GDP; 2 | 99.62 | |
| 2jeo_A | 245 | Uridine-cytidine kinase 1; UCK, transferase, ATP-b | 99.62 | |
| 1cr0_A | 296 | DNA primase/helicase; RECA-type protein fold, tran | 99.62 | |
| 4gp7_A | 171 | Metallophosphoesterase; polynucleotide kinase phos | 99.61 | |
| 3b9q_A | 302 | Chloroplast SRP receptor homolog, alpha subunit CP | 99.61 | |
| 1tq4_A | 413 | IIGP1, interferon-inducible GTPase; interferon gam | 99.61 | |
| 1ewq_A | 765 | DNA mismatch repair protein MUTS; multiple domains | 99.61 | |
| 3asz_A | 211 | Uridine kinase; cytidine phosphorylation, transfer | 99.59 | |
| 4a74_A | 231 | DNA repair and recombination protein RADA; hydrola | 99.59 | |
| 2i3b_A | 189 | HCR-ntpase, human cancer-related ntpase; AAA, ross | 99.57 | |
| 3thx_B | 918 | DNA mismatch repair protein MSH3; ABC family ATPas | 99.57 | |
| 1w1w_A | 430 | Structural maintenance of chromosome 1; cohesin, c | 99.56 | |
| 2og2_A | 359 | Putative signal recognition particle receptor; nuc | 99.56 | |
| 1pzn_A | 349 | RAD51, DNA repair and recombination protein RAD51, | 99.55 | |
| 2qnr_A | 301 | Septin-2, protein NEDD5; structural genomics conso | 99.55 | |
| 2eyu_A | 261 | Twitching motility protein PILT; pilus retraction | 99.54 | |
| 2dpy_A | 438 | FLII, flagellum-specific ATP synthase; beta barrel | 99.54 | |
| 2ewv_A | 372 | Twitching motility protein PILT; pilus retraction | 99.54 | |
| 2ehv_A | 251 | Hypothetical protein PH0186; KAIC, RECA ATPase, un | 99.53 | |
| 3jvv_A | 356 | Twitching mobility protein; hexameric P-loop ATPas | 99.53 | |
| 2ehv_A | 251 | Hypothetical protein PH0186; KAIC, RECA ATPase, un | 99.52 | |
| 2f1r_A | 171 | Molybdopterin-guanine dinucleotide biosynthesis pr | 99.52 | |
| 2ewv_A | 372 | Twitching motility protein PILT; pilus retraction | 99.52 | |
| 3szr_A | 608 | Interferon-induced GTP-binding protein MX1; interf | 99.51 | |
| 1pui_A | 210 | ENGB, probable GTP-binding protein ENGB; structura | 99.5 | |
| 2w0m_A | 235 | SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus | 99.5 | |
| 1pzn_A | 349 | RAD51, DNA repair and recombination protein RAD51, | 99.48 | |
| 4a74_A | 231 | DNA repair and recombination protein RADA; hydrola | 99.47 | |
| 1lw7_A | 365 | Transcriptional regulator NADR; NMN, NMN adenylyl | 99.47 | |
| 2qag_C | 418 | Septin-7; cell cycle, cell division, GTP-binding, | 99.46 | |
| 3kta_B | 173 | Chromosome segregation protein SMC; structural mai | 99.46 | |
| 3szr_A | 608 | Interferon-induced GTP-binding protein MX1; interf | 99.45 | |
| 1rj9_A | 304 | FTSY, signal recognition protein; SRP-GTPase domai | 99.45 | |
| 1cr0_A | 296 | DNA primase/helicase; RECA-type protein fold, tran | 99.45 | |
| 1wb9_A | 800 | DNA mismatch repair protein MUTS; DNA-binding, ATP | 99.44 | |
| 3aez_A | 312 | Pantothenate kinase; transferase, homodimer, COA b | 99.43 | |
| 1s96_A | 219 | Guanylate kinase, GMP kinase; E.coli, dimer, SAD, | 99.43 | |
| 1lw7_A | 365 | Transcriptional regulator NADR; NMN, NMN adenylyl | 99.42 | |
| 1nlf_A | 279 | Regulatory protein REPA; replicative DNA helicase | 99.42 | |
| 3asz_A | 211 | Uridine kinase; cytidine phosphorylation, transfer | 99.41 | |
| 2o8b_B | 1022 | DNA mismatch repair protein MSH6; DNA damage respo | 99.41 | |
| 2o5v_A | 359 | DNA replication and repair protein RECF; ABC ATPas | 99.41 | |
| 1odf_A | 290 | YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser | 99.41 | |
| 3jvv_A | 356 | Twitching mobility protein; hexameric P-loop ATPas | 99.41 | |
| 2qag_B | 427 | Septin-6, protein NEDD5; cell cycle, cell division | 99.39 | |
| 2gza_A | 361 | Type IV secretion system protein VIRB11; ATPase, h | 99.37 | |
| 1lvg_A | 198 | Guanylate kinase, GMP kinase; transferase; HET: AD | 99.35 | |
| 1s96_A | 219 | Guanylate kinase, GMP kinase; E.coli, dimer, SAD, | 99.35 | |
| 2f1r_A | 171 | Molybdopterin-guanine dinucleotide biosynthesis pr | 99.35 | |
| 2gza_A | 361 | Type IV secretion system protein VIRB11; ATPase, h | 99.32 | |
| 3thx_A | 934 | DNA mismatch repair protein MSH2; ABC family ATPas | 99.31 | |
| 1zp6_A | 191 | Hypothetical protein ATU3015; alpha-beta protein., | 99.31 | |
| 4ad8_A | 517 | DNA repair protein RECN; DNA binding protein, ATPa | 99.31 | |
| 1rj9_A | 304 | FTSY, signal recognition protein; SRP-GTPase domai | 99.29 | |
| 2cvh_A | 220 | DNA repair and recombination protein RADB; filamen | 99.29 | |
| 3qkt_A | 339 | DNA double-strand break repair RAD50 ATPase; RECA- | 99.28 | |
| 2w0m_A | 235 | SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus | 99.28 | |
| 2qag_C | 418 | Septin-7; cell cycle, cell division, GTP-binding, | 99.28 | |
| 2obl_A | 347 | ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O | 99.27 | |
| 4ad8_A | 517 | DNA repair protein RECN; DNA binding protein, ATPa | 99.27 | |
| 3c8u_A | 208 | Fructokinase; YP_612366.1, putative fructose trans | 99.25 | |
| 1n0w_A | 243 | DNA repair protein RAD51 homolog 1; DNA repair, ho | 99.25 | |
| 1ewq_A | 765 | DNA mismatch repair protein MUTS; multiple domains | 99.24 | |
| 1sxj_E | 354 | Activator 1 40 kDa subunit; clamp loader, processi | 99.23 | |
| 2jeo_A | 245 | Uridine-cytidine kinase 1; UCK, transferase, ATP-b | 99.2 | |
| 1htw_A | 158 | HI0065; nucleotide-binding fold, structural genomi | 99.19 | |
| 2cvh_A | 220 | DNA repair and recombination protein RADB; filamen | 99.19 | |
| 2rcn_A | 358 | Probable GTPase ENGC; YJEQ, circularly permuted, G | 99.18 | |
| 2bdt_A | 189 | BH3686; alpha-beta protein, structural genomics, P | 99.18 | |
| 3auy_A | 371 | DNA double-strand break repair RAD50 ATPase; DNA r | 99.17 | |
| 1wb9_A | 800 | DNA mismatch repair protein MUTS; DNA-binding, ATP | 99.15 | |
| 1pui_A | 210 | ENGB, probable GTP-binding protein ENGB; structura | 99.15 | |
| 1n0w_A | 243 | DNA repair protein RAD51 homolog 1; DNA repair, ho | 99.14 | |
| 1nij_A | 318 | Hypothetical protein YJIA; structural genomics, P- | 99.13 | |
| 1f2t_B | 148 | RAD50 ABC-ATPase; DNA double-strand break repair, | 99.09 | |
| 2bbw_A | 246 | Adenylate kinase 4, AK4; nucleotide kinase, nucleo | 99.09 | |
| 1p9r_A | 418 | General secretion pathway protein E; bacterial typ | 99.08 | |
| 2yhs_A | 503 | FTSY, cell division protein FTSY; cell cycle, prot | 99.07 | |
| 2qm8_A | 337 | GTPase/ATPase; G protein, G3E, metallochaperone, c | 99.06 | |
| 1nlf_A | 279 | Regulatory protein REPA; replicative DNA helicase | 99.06 | |
| 2qnr_A | 301 | Septin-2, protein NEDD5; structural genomics conso | 99.05 | |
| 1nij_A | 318 | Hypothetical protein YJIA; structural genomics, P- | 99.05 | |
| 3lda_A | 400 | DNA repair protein RAD51; DNA binding protein, ATP | 99.04 | |
| 3e70_C | 328 | DPA, signal recognition particle receptor; FTSY, S | 99.04 | |
| 2qag_B | 427 | Septin-6, protein NEDD5; cell cycle, cell division | 99.03 | |
| 1udx_A | 416 | The GTP-binding protein OBG; TGS domain, riken str | 99.02 | |
| 3ec2_A | 180 | DNA replication protein DNAC; helicase loader, rep | 99.01 | |
| 2oap_1 | 511 | GSPE-2, type II secretion system protein; hexameri | 99.0 | |
| 3thx_B | 918 | DNA mismatch repair protein MSH3; ABC family ATPas | 98.99 | |
| 2bbw_A | 246 | Adenylate kinase 4, AK4; nucleotide kinase, nucleo | 98.98 | |
| 2kjq_A | 149 | DNAA-related protein; solution structure, NESG, st | 98.98 | |
| 2kjq_A | 149 | DNAA-related protein; solution structure, NESG, st | 98.98 | |
| 3lda_A | 400 | DNA repair protein RAD51; DNA binding protein, ATP | 98.96 | |
| 2yhs_A | 503 | FTSY, cell division protein FTSY; cell cycle, prot | 98.92 | |
| 3e70_C | 328 | DPA, signal recognition particle receptor; FTSY, S | 98.91 | |
| 1sxj_E | 354 | Activator 1 40 kDa subunit; clamp loader, processi | 98.88 | |
| 2yv5_A | 302 | YJEQ protein; hydrolase, GTPase, permutation, stru | 98.88 | |
| 2x8a_A | 274 | Nuclear valosin-containing protein-like; nuclear p | 98.84 | |
| 2bdt_A | 189 | BH3686; alpha-beta protein, structural genomics, P | 98.84 | |
| 3ec2_A | 180 | DNA replication protein DNAC; helicase loader, rep | 98.83 | |
| 1sq5_A | 308 | Pantothenate kinase; P-loop, transferase; HET: PAU | 98.82 | |
| 1odf_A | 290 | YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser | 98.81 | |
| 3kta_B | 173 | Chromosome segregation protein SMC; structural mai | 98.78 | |
| 1ni3_A | 392 | YCHF GTPase, YCHF GTP-binding protein; structural | 98.74 | |
| 1htw_A | 158 | HI0065; nucleotide-binding fold, structural genomi | 98.73 | |
| 1u0l_A | 301 | Probable GTPase ENGC; permutation, OB-fold, zinc-f | 98.71 | |
| 3c8u_A | 208 | Fructokinase; YP_612366.1, putative fructose trans | 98.7 | |
| 3lnc_A | 231 | Guanylate kinase, GMP kinase; ALS collaborative cr | 98.69 | |
| 1cke_A | 227 | CK, MSSA, protein (cytidine monophosphate kinase); | 98.68 | |
| 1vma_A | 306 | Cell division protein FTSY; TM0570, structural gen | 98.62 | |
| 1t9h_A | 307 | YLOQ, probable GTPase ENGC; N-terminal beta-barrel | 98.61 | |
| 1zp6_A | 191 | Hypothetical protein ATU3015; alpha-beta protein., | 98.61 | |
| 1u0l_A | 301 | Probable GTPase ENGC; permutation, OB-fold, zinc-f | 98.6 | |
| 4e22_A | 252 | Cytidylate kinase; P-loop, CMP/ATP binding, transf | 98.57 | |
| 3euj_A | 483 | Chromosome partition protein MUKB, linker; MUKB, M | 98.56 | |
| 3a00_A | 186 | Guanylate kinase, GMP kinase; domain movement, dim | 98.53 | |
| 2px0_A | 296 | Flagellar biosynthesis protein FLHF; SRP GTPase, f | 98.51 | |
| 1ls1_A | 295 | Signal recognition particle protein; FFH, SRP54, S | 98.5 | |
| 2dy1_A | 665 | Elongation factor G; translocation, GTP complex, s | 98.46 | |
| 2yv5_A | 302 | YJEQ protein; hydrolase, GTPase, permutation, stru | 98.45 | |
| 1iy2_A | 278 | ATP-dependent metalloprotease FTSH; AAA domain fol | 98.44 | |
| 2px0_A | 296 | Flagellar biosynthesis protein FLHF; SRP GTPase, f | 98.44 | |
| 3auy_A | 371 | DNA double-strand break repair RAD50 ATPase; DNA r | 98.42 | |
| 2dr3_A | 247 | UPF0273 protein PH0284; RECA superfamily ATPase, h | 98.42 | |
| 1ni3_A | 392 | YCHF GTPase, YCHF GTP-binding protein; structural | 98.42 | |
| 1in4_A | 334 | RUVB, holliday junction DNA helicase RUVB; AAA+-cl | 98.41 | |
| 1oix_A | 191 | RAS-related protein RAB-11A; small G protein, intr | 98.41 | |
| 3tr0_A | 205 | Guanylate kinase, GMP kinase; purines, pyrimidines | 98.41 | |
| 1p9r_A | 418 | General secretion pathway protein E; bacterial typ | 98.4 | |
| 1ixz_A | 254 | ATP-dependent metalloprotease FTSH; AAA domain fol | 98.39 | |
| 3euj_A | 483 | Chromosome partition protein MUKB, linker; MUKB, M | 98.38 | |
| 2oap_1 | 511 | GSPE-2, type II secretion system protein; hexameri | 98.36 | |
| 2rcn_A | 358 | Probable GTPase ENGC; YJEQ, circularly permuted, G | 98.36 | |
| 2dr3_A | 247 | UPF0273 protein PH0284; RECA superfamily ATPase, h | 98.36 | |
| 3ney_A | 197 | 55 kDa erythrocyte membrane protein; structural ge | 98.34 | |
| 3lnc_A | 231 | Guanylate kinase, GMP kinase; ALS collaborative cr | 98.34 | |
| 2x8a_A | 274 | Nuclear valosin-containing protein-like; nuclear p | 98.32 | |
| 1kgd_A | 180 | CASK, peripheral plasma membrane CASK; maguk, guan | 98.31 | |
| 1ls1_A | 295 | Signal recognition particle protein; FFH, SRP54, S | 98.3 | |
| 2qm8_A | 337 | GTPase/ATPase; G protein, G3E, metallochaperone, c | 98.28 | |
| 1oix_A | 191 | RAS-related protein RAB-11A; small G protein, intr | 98.28 | |
| 3k1j_A | 604 | LON protease, ATP-dependent protease LON; ATP-bind | 98.27 | |
| 1sq5_A | 308 | Pantothenate kinase; P-loop, transferase; HET: PAU | 98.26 | |
| 2zr9_A | 349 | Protein RECA, recombinase A; recombination, RECA m | 98.24 | |
| 2zr9_A | 349 | Protein RECA, recombinase A; recombination, RECA m | 98.24 | |
| 3tr0_A | 205 | Guanylate kinase, GMP kinase; purines, pyrimidines | 98.24 | |
| 1svm_A | 377 | Large T antigen; AAA+ fold, viral protein; HET: AT | 98.23 | |
| 2r6a_A | 454 | DNAB helicase, replicative helicase; replication, | 98.22 | |
| 1t9h_A | 307 | YLOQ, probable GTPase ENGC; N-terminal beta-barrel | 98.22 | |
| 3kta_A | 182 | Chromosome segregation protein SMC; structural mai | 98.17 | |
| 2ius_A | 512 | DNA translocase FTSK; nucleotide-binding, chromoso | 98.16 | |
| 1w1w_A | 430 | Structural maintenance of chromosome 1; cohesin, c | 98.16 | |
| 3a00_A | 186 | Guanylate kinase, GMP kinase; domain movement, dim | 98.11 | |
| 1qhl_A | 227 | Protein (cell division protein MUKB); SMC, chromos | 98.11 | |
| 2ius_A | 512 | DNA translocase FTSK; nucleotide-binding, chromoso | 98.1 | |
| 1cke_A | 227 | CK, MSSA, protein (cytidine monophosphate kinase); | 98.1 | |
| 2f9l_A | 199 | RAB11B, member RAS oncogene family; RAB11B GTPase, | 98.09 | |
| 2ce7_A | 476 | Cell division protein FTSH; metalloprotease; HET: | 98.05 | |
| 1jjv_A | 206 | Dephospho-COA kinase; P-loop nucleotide-binding fo | 98.04 | |
| 1udx_A | 416 | The GTP-binding protein OBG; TGS domain, riken str | 98.04 | |
| 3nwj_A | 250 | ATSK2; P loop, shikimate, nucleoside monophosphate | 98.03 | |
| 1qhl_A | 227 | Protein (cell division protein MUKB); SMC, chromos | 98.0 | |
| 2xau_A | 773 | PRE-mRNA-splicing factor ATP-dependent RNA helica; | 97.97 | |
| 1vma_A | 306 | Cell division protein FTSY; TM0570, structural gen | 97.96 | |
| 4e22_A | 252 | Cytidylate kinase; P-loop, CMP/ATP binding, transf | 97.95 | |
| 2r6a_A | 454 | DNAB helicase, replicative helicase; replication, | 97.93 | |
| 3tqc_A | 321 | Pantothenate kinase; biosynthesis of cofactors, pr | 97.91 | |
| 3vaa_A | 199 | Shikimate kinase, SK; structural genomics, center | 97.9 | |
| 3t34_A | 360 | Dynamin-related protein 1A, linker, dynamin-relat | 97.9 | |
| 2f9l_A | 199 | RAB11B, member RAS oncogene family; RAB11B GTPase, | 97.88 | |
| 2qtf_A | 364 | Protein HFLX, GTP-binding protein; beta-alpha-barr | 97.88 | |
| 4a1f_A | 338 | DNAB helicase, replicative DNA helicase; hydrolase | 97.84 | |
| 2dhr_A | 499 | FTSH; AAA+ protein, hexameric Zn metalloprotease, | 97.8 | |
| 2e87_A | 357 | Hypothetical protein PH1320; GTP-binding, GTPase, | 97.77 | |
| 3uie_A | 200 | Adenylyl-sulfate kinase 1, chloroplastic; rossmann | 97.77 | |
| 2j41_A | 207 | Guanylate kinase; GMP, GMK, transferase, ATP-bindi | 97.75 | |
| 3k1j_A | 604 | LON protease, ATP-dependent protease LON; ATP-bind | 97.7 | |
| 2dy1_A | 665 | Elongation factor G; translocation, GTP complex, s | 97.64 | |
| 2qt1_A | 207 | Nicotinamide riboside kinase 1; non-protein kinase | 97.63 | |
| 1iy2_A | 278 | ATP-dependent metalloprotease FTSH; AAA domain fol | 97.59 | |
| 1kgd_A | 180 | CASK, peripheral plasma membrane CASK; maguk, guan | 97.59 | |
| 4eun_A | 200 | Thermoresistant glucokinase; putative sugar kinase | 97.57 | |
| 3uie_A | 200 | Adenylyl-sulfate kinase 1, chloroplastic; rossmann | 97.56 | |
| 4eun_A | 200 | Thermoresistant glucokinase; putative sugar kinase | 97.55 | |
| 1in4_A | 334 | RUVB, holliday junction DNA helicase RUVB; AAA+-cl | 97.53 | |
| 3ney_A | 197 | 55 kDa erythrocyte membrane protein; structural ge | 97.51 | |
| 3ice_A | 422 | Transcription termination factor RHO; transcriptio | 97.5 | |
| 3tau_A | 208 | Guanylate kinase, GMP kinase; structural genomics, | 97.48 | |
| 3hr8_A | 356 | Protein RECA; alpha and beta proteins (A/B, A+B), | 97.47 | |
| 2z4s_A | 440 | Chromosomal replication initiator protein DNAA; AA | 97.44 | |
| 3bh0_A | 315 | DNAB-like replicative helicase; ATPase, replicatio | 97.44 | |
| 2z43_A | 324 | DNA repair and recombination protein RADA; archaea | 97.43 | |
| 2ce7_A | 476 | Cell division protein FTSH; metalloprotease; HET: | 97.38 | |
| 2vp4_A | 230 | Deoxynucleoside kinase; ATP-binding, DNA synthesis | 97.36 | |
| 2j41_A | 207 | Guanylate kinase; GMP, GMK, transferase, ATP-bindi | 97.36 | |
| 2vp4_A | 230 | Deoxynucleoside kinase; ATP-binding, DNA synthesis | 97.32 | |
| 3tau_A | 208 | Guanylate kinase, GMP kinase; structural genomics, | 97.32 | |
| 3kta_A | 182 | Chromosome segregation protein SMC; structural mai | 97.32 | |
| 1rz3_A | 201 | Hypothetical protein rbstp0775; MCSG, structural g | 97.31 | |
| 3hr8_A | 356 | Protein RECA; alpha and beta proteins (A/B, A+B), | 97.28 | |
| 2qt1_A | 207 | Nicotinamide riboside kinase 1; non-protein kinase | 97.27 | |
| 1fnn_A | 389 | CDC6P, cell division control protein 6; ORC1, AAA | 97.23 | |
| 1zu4_A | 320 | FTSY; GTPase, signal recognition particle, SRP, re | 97.22 | |
| 3cr8_A | 552 | Sulfate adenylyltranferase, adenylylsulfate kinase | 97.18 | |
| 1knq_A | 175 | Gluconate kinase; ALFA/beta structure, transferase | 97.16 | |
| 1v5w_A | 343 | DMC1, meiotic recombination protein DMC1/LIM15 hom | 97.15 | |
| 3kl4_A | 433 | SRP54, signal recognition 54 kDa protein; signal r | 97.12 | |
| 3tqc_A | 321 | Pantothenate kinase; biosynthesis of cofactors, pr | 97.1 | |
| 3b9p_A | 297 | CG5977-PA, isoform A; AAA ATPase, ATP-binding, nuc | 97.09 | |
| 3cr8_A | 552 | Sulfate adenylyltranferase, adenylylsulfate kinase | 97.08 | |
| 2z43_A | 324 | DNA repair and recombination protein RADA; archaea | 97.07 | |
| 2qtf_A | 364 | Protein HFLX, GTP-binding protein; beta-alpha-barr | 97.07 | |
| 1zu4_A | 320 | FTSY; GTPase, signal recognition particle, SRP, re | 97.06 | |
| 1fnn_A | 389 | CDC6P, cell division control protein 6; ORC1, AAA | 97.06 | |
| 1knq_A | 175 | Gluconate kinase; ALFA/beta structure, transferase | 96.97 | |
| 1ixz_A | 254 | ATP-dependent metalloprotease FTSH; AAA domain fol | 96.97 | |
| 1v5w_A | 343 | DMC1, meiotic recombination protein DMC1/LIM15 hom | 96.95 | |
| 3lxx_A | 239 | GTPase IMAP family member 4; structural genomics c | 96.93 | |
| 3kl4_A | 433 | SRP54, signal recognition 54 kDa protein; signal r | 96.92 | |
| 1f2t_A | 149 | RAD50 ABC-ATPase; DNA double-strand break repair, | 96.92 | |
| 1sxj_C | 340 | Activator 1 40 kDa subunit; clamp loader, processi | 96.86 | |
| 2qby_A | 386 | CDC6 homolog 1, cell division control protein 6 ho | 96.85 | |
| 1ypw_A | 806 | Transitional endoplasmic reticulum ATPase; AAA, P9 | 96.84 | |
| 1kag_A | 173 | SKI, shikimate kinase I; transferase, structural g | 96.81 | |
| 2p67_A | 341 | LAO/AO transport system kinase; ARGK, structural G | 96.79 | |
| 1rz3_A | 201 | Hypothetical protein rbstp0775; MCSG, structural g | 96.79 | |
| 1l8q_A | 324 | Chromosomal replication initiator protein DNAA; AA | 96.75 | |
| 2z4s_A | 440 | Chromosomal replication initiator protein DNAA; AA | 96.75 | |
| 1njg_A | 250 | DNA polymerase III subunit gamma; rossman-like fol | 96.72 | |
| 3r20_A | 233 | Cytidylate kinase; structural genomics, seattle st | 96.72 | |
| 4eaq_A | 229 | DTMP kinase, thymidylate kinase; structural genomi | 96.72 | |
| 2w58_A | 202 | DNAI, primosome component (helicase loader); ATP-b | 96.71 | |
| 2dhr_A | 499 | FTSH; AAA+ protein, hexameric Zn metalloprotease, | 96.7 | |
| 2pez_A | 179 | Bifunctional 3'-phosphoadenosine 5'- phosphosulfat | 96.68 | |
| 1ypw_A | 806 | Transitional endoplasmic reticulum ATPase; AAA, P9 | 96.63 | |
| 3llm_A | 235 | ATP-dependent RNA helicase A; alpha-beta-alpha, st | 96.62 | |
| 2e87_A | 357 | Hypothetical protein PH1320; GTP-binding, GTPase, | 96.62 | |
| 2qby_A | 386 | CDC6 homolog 1, cell division control protein 6 ho | 96.62 | |
| 1jjv_A | 206 | Dephospho-COA kinase; P-loop nucleotide-binding fo | 96.62 | |
| 3vaa_A | 199 | Shikimate kinase, SK; structural genomics, center | 96.59 | |
| 2pez_A | 179 | Bifunctional 3'-phosphoadenosine 5'- phosphosulfat | 96.58 | |
| 1l8q_A | 324 | Chromosomal replication initiator protein DNAA; AA | 96.55 | |
| 1u94_A | 356 | RECA protein, recombinase A; homologous recombinat | 96.54 | |
| 3bos_A | 242 | Putative DNA replication factor; P-loop containing | 96.53 | |
| 3lxx_A | 239 | GTPase IMAP family member 4; structural genomics c | 96.52 | |
| 1m7g_A | 211 | Adenylylsulfate kinase; APS kinase, transferase, s | 96.49 | |
| 1f6b_A | 198 | SAR1; gtpases, N-terminal helix, Mg-containing com | 96.49 | |
| 2q6t_A | 444 | DNAB replication FORK helicase; hydrolase; 2.90A { | 96.49 | |
| 1sxj_D | 353 | Activator 1 41 kDa subunit; clamp loader, processi | 96.49 | |
| 2www_A | 349 | Methylmalonic aciduria type A protein, mitochondri | 96.46 | |
| 3llm_A | 235 | ATP-dependent RNA helicase A; alpha-beta-alpha, st | 96.45 | |
| 1mky_A | 439 | Probable GTP-binding protein ENGA; GTPase, DER, KH | 96.44 | |
| 1lv7_A | 257 | FTSH; alpha/beta domain, four helix bundle, hydrol | 96.43 | |
| 2qor_A | 204 | Guanylate kinase; phosphotransferase, purine metab | 96.43 | |
| 3m6a_A | 543 | ATP-dependent protease LA 1; alpha, beta, ATP-bind | 96.42 | |
| 1svm_A | 377 | Large T antigen; AAA+ fold, viral protein; HET: AT | 96.41 | |
| 3n70_A | 145 | Transport activator; sigma-54, ntpase, PSI, MCSG, | 96.36 | |
| 3cf0_A | 301 | Transitional endoplasmic reticulum ATPase; AAA, P9 | 96.33 | |
| 2xau_A | 773 | PRE-mRNA-splicing factor ATP-dependent RNA helica; | 96.3 | |
| 2ffh_A | 425 | Protein (FFH); SRP54, signal recognition particle, | 96.28 | |
| 3qks_A | 203 | DNA double-strand break repair RAD50 ATPase; RECA- | 96.25 | |
| 2gj8_A | 172 | MNME, tRNA modification GTPase TRME; G-domain dime | 96.23 | |
| 1m2o_B | 190 | GTP-binding protein SAR1, GTP binding protein; zin | 96.2 | |
| 4fcw_A | 311 | Chaperone protein CLPB; AAA domain; HET: ADP; 2.35 | 96.16 | |
| 1y63_A | 184 | LMAJ004144AAA protein; structural genomics, protei | 96.16 | |
| 3h4m_A | 285 | Proteasome-activating nucleotidase; ATPase, PAN, A | 96.13 | |
| 3nwj_A | 250 | ATSK2; P loop, shikimate, nucleoside monophosphate | 96.12 | |
| 3bos_A | 242 | Putative DNA replication factor; P-loop containing | 96.08 | |
| 1u94_A | 356 | RECA protein, recombinase A; homologous recombinat | 96.03 | |
| 2qor_A | 204 | Guanylate kinase; phosphotransferase, purine metab | 96.02 | |
| 2www_A | 349 | Methylmalonic aciduria type A protein, mitochondri | 95.98 | |
| 3lxw_A | 247 | GTPase IMAP family member 1; immunity, structural | 95.97 | |
| 2jaq_A | 205 | Deoxyguanosine kinase; transferase, deoxyribonucle | 95.97 | |
| 3h4m_A | 285 | Proteasome-activating nucleotidase; ATPase, PAN, A | 95.96 | |
| 2ffh_A | 425 | Protein (FFH); SRP54, signal recognition particle, | 95.96 | |
| 2yvu_A | 186 | Probable adenylyl-sulfate kinase; transferase, str | 95.92 | |
| 2ohf_A | 396 | Protein OLA1, GTP-binding protein 9; ATPase, GTPas | 95.91 | |
| 1kag_A | 173 | SKI, shikimate kinase I; transferase, structural g | 95.87 | |
| 1j8m_F | 297 | SRP54, signal recognition 54 kDa protein; signalin | 95.84 | |
| 3t34_A | 360 | Dynamin-related protein 1A, linker, dynamin-relat | 95.84 | |
| 4eaq_A | 229 | DTMP kinase, thymidylate kinase; structural genomi | 95.79 | |
| 1mky_A | 439 | Probable GTP-binding protein ENGA; GTPase, DER, KH | 95.77 | |
| 3b9p_A | 297 | CG5977-PA, isoform A; AAA ATPase, ATP-binding, nuc | 95.75 | |
| 4dcu_A | 456 | GTP-binding protein ENGA; GTPase, GDP, protein bin | 95.74 | |
| 2qag_A | 361 | Septin-2, protein NEDD5; cell cycle, cell division | 95.72 | |
| 3bgw_A | 444 | DNAB-like replicative helicase; ATPase, replicatio | 95.69 | |
| 2wji_A | 165 | Ferrous iron transport protein B homolog; membrane | 95.69 | |
| 2chg_A | 226 | Replication factor C small subunit; DNA-binding pr | 95.66 | |
| 1m7g_A | 211 | Adenylylsulfate kinase; APS kinase, transferase, s | 95.66 | |
| 4fcw_A | 311 | Chaperone protein CLPB; AAA domain; HET: ADP; 2.35 | 95.64 | |
| 3m6a_A | 543 | ATP-dependent protease LA 1; alpha, beta, ATP-bind | 95.61 | |
| 2i1q_A | 322 | DNA repair and recombination protein RADA; ATPase, | 95.53 | |
| 2p5t_B | 253 | PEZT; postsegregational killing system, phosphoryl | 95.46 | |
| 2i1q_A | 322 | DNA repair and recombination protein RADA; ATPase, | 95.45 | |
| 2wjg_A | 188 | FEOB, ferrous iron transport protein B homolog; me | 95.44 | |
| 2if2_A | 204 | Dephospho-COA kinase; alpha-beta protein, structur | 95.43 | |
| 2b8t_A | 223 | Thymidine kinase; deoxyribonucleoside kinase, zinc | 95.43 | |
| 3syl_A | 309 | Protein CBBX; photosynthesis, rubisco activase, AA | 95.41 | |
| 1ega_A | 301 | Protein (GTP-binding protein ERA); GTPase, RNA-bin | 95.41 | |
| 1np6_A | 174 | Molybdopterin-guanine dinucleotide biosynthesis pr | 95.36 | |
| 3cf0_A | 301 | Transitional endoplasmic reticulum ATPase; AAA, P9 | 95.35 | |
| 2q6t_A | 444 | DNAB replication FORK helicase; hydrolase; 2.90A { | 95.33 | |
| 2zej_A | 184 | Dardarin, leucine-rich repeat kinase 2; parkinson' | 95.27 | |
| 2ga8_A | 359 | Hypothetical 39.9 kDa protein; YFR007W, YFH7, unkn | 95.2 | |
| 3cm0_A | 186 | Adenylate kinase; ATP-binding, cytoplasm, nucleoti | 95.13 | |
| 1jr3_A | 373 | DNA polymerase III subunit gamma; processivity, pr | 95.1 | |
| 2vhj_A | 331 | Ntpase P4, P4; non- hydrolysable ATP analogue, hyd | 95.03 | |
| 1np6_A | 174 | Molybdopterin-guanine dinucleotide biosynthesis pr | 95.0 | |
| 3t61_A | 202 | Gluconokinase; PSI-biology, structural genomics, p | 94.99 | |
| 2v1u_A | 387 | Cell division control protein 6 homolog; DNA repli | 94.95 | |
| 1njg_A | 250 | DNA polymerase III subunit gamma; rossman-like fol | 94.93 | |
| 1xp8_A | 366 | RECA protein, recombinase A; recombination, radior | 94.92 | |
| 2gj8_A | 172 | MNME, tRNA modification GTPase TRME; G-domain dime | 94.89 | |
| 3t61_A | 202 | Gluconokinase; PSI-biology, structural genomics, p | 94.88 | |
| 1ex7_A | 186 | Guanylate kinase; substrate-induced FIT, domain mo | 94.85 | |
| 4dcu_A | 456 | GTP-binding protein ENGA; GTPase, GDP, protein bin | 94.83 | |
| 3t15_A | 293 | Ribulose bisphosphate carboxylase/oxygenase activ | 94.76 | |
| 1sxj_C | 340 | Activator 1 40 kDa subunit; clamp loader, processi | 94.76 | |
| 2v1u_A | 387 | Cell division control protein 6 homolog; DNA repli | 94.75 | |
| 1qhx_A | 178 | CPT, protein (chloramphenicol phosphotransferase); | 94.74 | |
| 1hqc_A | 324 | RUVB; extended AAA-ATPase domain, complex with nuc | 94.74 | |
| 1gvn_B | 287 | Zeta; postsegregational killing system, plasmid; 1 | 94.72 | |
| 1tue_A | 212 | Replication protein E1; helicase, replication, E1E | 94.71 | |
| 1lv7_A | 257 | FTSH; alpha/beta domain, four helix bundle, hydrol | 94.69 | |
| 3co5_A | 143 | Putative two-component system transcriptional RES | 94.65 | |
| 1xwi_A | 322 | SKD1 protein; VPS4B, AAA ATPase, protein transport | 94.63 | |
| 3d8b_A | 357 | Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, s | 94.63 | |
| 1ex7_A | 186 | Guanylate kinase; substrate-induced FIT, domain mo | 94.56 | |
| 2wjg_A | 188 | FEOB, ferrous iron transport protein B homolog; me | 94.54 | |
| 1q3t_A | 236 | Cytidylate kinase; nucleotide monophosphate kinase | 94.53 | |
| 3kb2_A | 173 | SPBC2 prophage-derived uncharacterized protein YOR | 94.52 | |
| 2wji_A | 165 | Ferrous iron transport protein B homolog; membrane | 94.52 | |
| 2qz4_A | 262 | Paraplegin; AAA+, SPG7, protease, ADP, structural | 94.49 | |
| 3pfi_A | 338 | Holliday junction ATP-dependent DNA helicase RUVB; | 94.45 | |
| 4ag6_A | 392 | VIRB4 ATPase, type IV secretory pathway VIRB4 comp | 94.45 | |
| 2rhm_A | 193 | Putative kinase; P-loop containing nucleoside trip | 94.4 | |
| 3r20_A | 233 | Cytidylate kinase; structural genomics, seattle st | 94.36 | |
| 3uk6_A | 368 | RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding | 94.32 | |
| 1kht_A | 192 | Adenylate kinase; phosphotransferase, signaling pr | 94.31 | |
| 2yvu_A | 186 | Probable adenylyl-sulfate kinase; transferase, str | 94.3 | |
| 1m2o_B | 190 | GTP-binding protein SAR1, GTP binding protein; zin | 94.28 | |
| 1xp8_A | 366 | RECA protein, recombinase A; recombination, radior | 94.24 | |
| 2orw_A | 184 | Thymidine kinase; TMTK, TP4A, transferase; HET: 4T | 94.16 | |
| 1uf9_A | 203 | TT1252 protein; P-loop, nucleotide binding domain, | 94.14 | |
| 2qp9_X | 355 | Vacuolar protein sorting-associated protein 4; ATP | 94.13 | |
| 3lw7_A | 179 | Adenylate kinase related protein (ADKA-like); AMP, | 94.12 | |
| 1jal_A | 363 | YCHF protein; nucleotide-binding fold, structural | 94.1 | |
| 3d8b_A | 357 | Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, s | 94.07 | |
| 2v54_A | 204 | DTMP kinase, thymidylate kinase; nucleotide biosyn | 94.05 | |
| 1gtv_A | 214 | TMK, thymidylate kinase; transferase, transferase | 94.01 | |
| 3trf_A | 185 | Shikimate kinase, SK; amino acid biosynthesis, tra | 94.0 | |
| 2p67_A | 341 | LAO/AO transport system kinase; ARGK, structural G | 93.96 |
| >4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.8e-152 Score=1511.72 Aligned_cols=1122 Identities=19% Similarity=0.223 Sum_probs=792.1
Q ss_pred HHhhc-cCCCCCCCCCCCCCCCchhhHHHHHHHHHHHhhcc-----------cccCCccchHHHHHHH----HHHHHHHH
Q 037346 23 IALGN-KRTLDLEDVPRLDCSDSIYGVSPVLQNKLEAVVGV-----------ANRLTALRLAKVLFFS----AWQEILFI 86 (1156)
Q Consensus 23 ~~~g~-~~~l~~~dl~~l~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~l~~~l~~~----~~~~~~~~ 86 (1156)
++.|. +++|+.+|.+.+.++|..+...+.+++.|...... ....++.+ ++.++|. .+..++++
T Consensus 2 ~r~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~-~~~Lfrya~~~d~~l~~~g 80 (1321)
T 4f4c_A 2 LRNGSLRQSLRTLDSFSLAPEDVLKTAIKTVEDYEGDNIDSNGEIKITRDAKEEVVNKVS-IPQLYRYTTTLEKLLLFIG 80 (1321)
T ss_dssp --CHHHHHHHHHHHHTCCCHHHHHHHHHHHHHTTSTTTBCSSSCBCCSCC---CCSSCCC-HHHHTTTCCHHHHHHHHHH
T ss_pred CCCchhhcCCcccccccCCchhhcccccchhhhhcccccccccccchhhhhhhcccCCCC-HHHHhhccChHHHHHHHHH
Confidence 34444 45788999999999999988888888776553210 00112223 3344442 12223333
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCC--------Cc-------cc---------chhhHH-------HHHHHHHHHHH
Q 037346 87 AILALLYTLATYVGPYLIDNFVQYLNGR--------QA-------FE---------YEGYVL-------CLSERHWFFQV 135 (1156)
Q Consensus 87 ~~~~~~~~~~~~~~p~ll~~~i~~~~~~--------~~-------~~---------~~g~~l-------~~~~~~~~~~~ 135 (1156)
.++.++..+...+.+++++++++.+... .. .. ...+.+ .++.....+..
T Consensus 81 ~~~a~~~G~~~p~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~ 160 (1321)
T 4f4c_A 81 TLVAVITGAGLPLMSILQGKVSQAFINEQIVINNNGSTFLPTGQNYTKTDFEHDVMNVVWSYAAMTVGMWAAGQITVTCY 160 (1321)
T ss_dssp HHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHTTSCBCSSTTCBCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444444444556777777754211 00 00 000100 11111222334
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCccccCCCCHHHHHHHHHHHHHH---------------------HHHHHHHHHHHHHH
Q 037346 136 QQFGIRFRATLFAMIYNKGLTLSGQAKQGNTSGEIINLIAVDAER---------------------ALLILYKKLGLASI 194 (1156)
Q Consensus 136 ~~~~~~~r~~l~~~i~~k~l~l~~~~~~~~~~g~i~nl~s~D~~~---------------------~~~ll~~~lg~~~l 194 (1156)
.+.+.|+...++..+|+|+++++..+++++++|+++|++++|+++ ++++++..-...++
T Consensus 161 ~~~~~r~~~~lR~~~~~~ll~~~~~~fd~~~~G~l~sr~~~D~~~i~~~~~~~l~~~~~~~~~~i~~~i~~~~~~~~l~l 240 (1321)
T 4f4c_A 161 LYVAEQMNNRLRREFVKSILRQEISWFDTNHSGTLATKLFDNLERVKEGTGDKIGMAFQYLSQFITGFIVAFTHSWQLTL 240 (1321)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTSCHHHHHHTCCTTHHHHHHHHHHHHHHTSSHHHHHHHHHHHHHHHHHHHHHHHCHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHCCCHHHHCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 566777778888899999999999999999999999999999987 11111111111223
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH-----HHHHHHHH----HHHHH
Q 037346 195 ATLLATAIVMLANFPLGRLREKFQDKFMETKDRRIKATSEILRNMRILKLQGWELKKN-----ETAWLKKS----VYTEA 265 (1156)
Q Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~r~~~~~e~l~~i~~IK~~~~e~r~~-----e~~~~~~~----~~~~~ 265 (1156)
+.++++++++++...+.+...+..++.++..+++.+.++|.++|||+||+|+||.+.. ..+..++. ....+
T Consensus 241 v~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~ 320 (1321)
T 4f4c_A 241 VMLAVTPIQALCGFAIAKSMSTFAIRETLRYAKAGKVVEETISSIRTVVSLNGLRYELERYSTAVEEAKKAGVLKGLFLG 320 (1321)
T ss_dssp HHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444555566677888888999999999999999999999999999999992111 11111111 11111
Q ss_pred HHHHHHH--HHHHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCc
Q 037346 266 MISFFCW--GAPTFVSVVTFGSCILLGIPLESGMILSALTTFKILQEPIYYLPESISMMIQAKVPLDRIASFLCLEGLQT 343 (1156)
Q Consensus 266 ~~~~~~~--~~~~~~~~~~f~~~~~~~~~lt~~~~ft~l~~~~~l~~pl~~l~~~~~~~~~a~~s~~Ri~~fl~~~~~~~ 343 (1156)
+...... ....++.+++++.+.+.++.+++|.+++++.++..+..|+..+++.+..+.++.+|++||+++|+.++..+
T Consensus 321 ~~~~~~~~~~~~~~~~~~~~g~~~v~~g~lt~g~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~s~~ri~~~l~~~~~~~ 400 (1321)
T 4f4c_A 321 ISFGAMQASNFISFALAFYIGVGWVHDGSLNFGDMLTTFSSVMMGSMALGLAGPQLAVLGTAQGAASGIYEVLDRKPVID 400 (1321)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTSCCSS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcccc
Confidence 1111111 12234456678888888999999999999999999999999999999999999999999999998765422
Q ss_pred cc-cccCCCCCCCccEEEeeeEEEeCCCCCCCccccceEEeeCCeEEEEEcCCCCChHHHHHHHhCCCCCCCcEEEEcC-
Q 037346 344 DV-LEKMPRGNSDTAIEIIDGSFSWDFSSPNPTLRNINLKVFHGMRVAVCGTVGSGKSSCLSCILGGVPKESGIIRLCG- 421 (1156)
Q Consensus 344 ~~-~~~~~~~~~~~~i~~~~~~f~~~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKSTll~~i~g~~~~~~G~i~~~g- 421 (1156)
.. ....+..+..+.|+|+||+|+|+..++.++|+|+||+|++|++++||||||||||||+++|+|+|+|++|+|.+||
T Consensus 401 ~~~~~~~~~~~~~g~I~~~nvsF~Y~~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTll~ll~~~~~~~~G~I~idG~ 480 (1321)
T 4f4c_A 401 SSSKAGRKDMKIKGDITVENVHFTYPSRPDVPILRGMNLRVNAGQTVALVGSSGCGKSTIISLLLRYYDVLKGKITIDGV 480 (1321)
T ss_dssp CSSSCCCCCCCCCCCEEEEEEEECCSSSTTSCSEEEEEEEECTTCEEEEEECSSSCHHHHHHHHTTSSCCSEEEEEETTE
T ss_pred ccccccccCCCCCCcEEEEEeeeeCCCCCCCceeeceEEeecCCcEEEEEecCCCcHHHHHHHhccccccccCcccCCCc
Confidence 21 1111222345679999999999877778999999999999999999999999999999999999999999999999
Q ss_pred ------------eEEEEecCCcCCCccHHHHhhcCCC-CCHHHHHHHHHHhCCchhhhhCCCCCccccccCCCCCCHHHH
Q 037346 422 ------------TKAYVAQSPWIQSGKIEENILFGKE-MDRERYERVLEACSLKKDLEVLPFGDQTIIGERGINLSGGQK 488 (1156)
Q Consensus 422 ------------~~~~v~Q~~~~~~~ti~eni~~~~~-~~~~~~~~~~~~~~l~~~~~~~~~g~~t~v~~~g~~LSgGqk 488 (1156)
+++||+|+||+|++||+|||+||.+ .+++++.++++.|+++++++.+|+||+|.|||+|.+||||||
T Consensus 481 ~i~~~~~~~lr~~i~~v~Q~~~Lf~~TI~eNI~~g~~~~~~~~v~~a~~~a~l~~~i~~lp~G~~T~vGe~G~~LSGGQk 560 (1321)
T 4f4c_A 481 DVRDINLEFLRKNVAVVSQEPALFNCTIEENISLGKEGITREEMVAACKMANAEKFIKTLPNGYNTLVGDRGTQLSGGQK 560 (1321)
T ss_dssp ETTTSCHHHHHHHEEEECSSCCCCSEEHHHHHHTTCTTCCHHHHHHHHHHTTCHHHHHHSTTTTSSEESSSSCCCCHHHH
T ss_pred cchhccHHHHhhcccccCCcceeeCCchhHHHhhhcccchHHHHHHHHHHccchhHHHcCCCCCccEecCCCCCCCHHHH
Confidence 4899999999999999999999986 788999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhccCCCeeeeeCCCCCcCHHHHHHHHHHHHh-cCCCEEEEEccCCCccccCCEEEEEeCCeEEEccChHHHH
Q 037346 489 QRIQIARPLYQDADIFLLDDPFSPVDDHTGAHLFKFCWV-SSSKTVIYATHQVEFLPAADLILVIKDGKITQAGKYSDIL 567 (1156)
Q Consensus 489 qRi~lAral~~~~~illlDep~s~lD~~~~~~i~~~~~~-~~~~tvi~vtH~~~~~~~~d~i~~l~~G~i~~~g~~~~l~ 567 (1156)
|||+||||+|++|+||||||||||||+++++.+.+.+.. .+|+|+|+||||+++++.||+|++|++|+|+++|+|+|++
T Consensus 561 QRiaiARAl~~~~~IliLDE~tSaLD~~te~~i~~~l~~~~~~~T~iiiaHrls~i~~aD~Iivl~~G~ive~Gth~eL~ 640 (1321)
T 4f4c_A 561 QRIAIARALVRNPKILLLDEATSALDAESEGIVQQALDKAAKGRTTIIIAHRLSTIRNADLIISCKNGQVVEVGDHRALM 640 (1321)
T ss_dssp HHHHHHHHHTTCCSEEEEESTTTTSCTTTHHHHHHHHHHHHTTSEEEEECSCTTTTTTCSEEEEEETTEEEEEECHHHHH
T ss_pred HHHHHHHHHccCCCEEEEecccccCCHHHHHHHHHHHHHHhCCCEEEEEcccHHHHHhCCEEEEeeCCeeeccCCHHHHH
Confidence 999999999999999999999999999998766655543 6899999999999999999999999999999999999999
Q ss_pred hcCcchHHHHHhhhhhccCC----CCCCCCCcccccccccCC--CCCCCcccchhccccc------CCCCcccccCccCc
Q 037346 568 NSGTDFMELVGAHKQALSGL----DSIDRGPVSERKSINKEN--DGTSTTNEIVNKEENK------NFQSDDEAALPKGQ 635 (1156)
Q Consensus 568 ~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~ 635 (1156)
+.++.|.+++..+....... ......+.........+. ................ ......+++...+.
T Consensus 641 ~~~g~y~~l~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 720 (1321)
T 4f4c_A 641 AQQGLYYDLVTAQTFTDAVDSAAEGKFSRENSVARQTSEHEGLSRQASEMDDIMNRVRSSTIGSITNGPVIDEKEERIGK 720 (1321)
T ss_dssp TTTCHHHHHHHHHHHHHHHHHHHCC--------------------------------------------------CCCCC
T ss_pred HhhhHHHHHHHhhhcccccccccccccccccccccccccccccccccccccchhhhhhccccccccCCcchhHHHhhccc
Confidence 99999999886653221100 000000000000000000 0000000000000000 00000000000000
Q ss_pred ----chhHHHHhcCcccHHHHHHHHHHhccchHH-HHHHHHHHHHHHHHhhhhhhhhhcccc-ccccC-CCCCchhhHHH
Q 037346 636 ----LVQEEEREKGKVGFSVYWKYMTTAYGGVLV-PFILLAQIIFQIFQIGSNYWMAWATPV-AKDVN-PAVGASTLIIV 708 (1156)
Q Consensus 636 ----~~~~e~~~~g~~~~~~~~~y~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~-~~~~~~~~~~~ 708 (1156)
....+.++.+......+ .++....+.... .+.+++.++........++|+..|... ..... ......++..+
T Consensus 721 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 799 (1321)
T 4f4c_A 721 DALSRLKQELEENNAQKTNLF-EILYHARPHALSLFIGMSTATIGGFIYPTYSVFFTSFMNVFAGNPADFLSQGHFWALM 799 (1321)
T ss_dssp CHHHHHHHTTTTSCCCCCCHH-HHHHHTGGGHHHHHHHHHHHHHGGGHHHHHHHHHHHHHHHTSSCSSTTTTTHHHHHHH
T ss_pred hhHHHHHHHHHHcCCcceeHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhhhHHHHHHHH
Confidence 01111122222222222 222222222221 111222222222222223333322211 11111 11111222222
Q ss_pred HHH------------------HHHHHHHHHHHHHHHHhcccccccccc--ccccchhhhhcccccccchhhhcccchHHH
Q 037346 709 YVG------------------AGYKTATQLFNKMHVCIFRAPMYFFDS--TPSGRILNRVSENVKWADQSAADMDIPYDI 768 (1156)
Q Consensus 709 ~~~------------------~~~~~~~~l~~~l~~~ll~~p~~ff~~--~~~G~il~R~s~d~~~~d~~~~d~~l~~~~ 768 (1156)
|++ .+.+++.++|.+++++++++|++|||. +|+|+++||++ .|+..++..++..+
T Consensus 800 ~~~l~~~~~i~~~~~~~~~~~~~~~~~~~lr~~l~~~il~~~~~ffd~~~~~~G~i~~r~s-----~D~~~i~~~l~~~l 874 (1321)
T 4f4c_A 800 FLVLAAAQGICSFLMTFFMGIASESLTRDLRNKLFRNVLSQHIGFFDSPQNASGKISTRLA-----TDVPNLRTAIDFRF 874 (1321)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCSSSTTSGGGCHHHHHHHHH-----THHHHHHTTTSHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhccCCCChHHHHhcch-----hhHHHHHHHHHHHH
Confidence 211 567889999999999999999999986 89999999999 89999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhChHHHHHHhhccchhhhhhcchH
Q 037346 769 GAFAFSMIQLLGIIVVMSLVAWQVLIVFVPVIATFIWYQQYYITSTRELSRLIGVCKAPVIQQFSETISGSTTIRSLDQE 848 (1156)
Q Consensus 769 ~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~e~l~Gi~tIra~~~e 848 (1156)
..++..++.+++.++++++.+|+++++++++++++++...++.+..+.......+..++...++.|+++|+++||+|++|
T Consensus 875 ~~~~~~~~~~i~~~~~~~~~~~~l~lv~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~tIra~~~e 954 (1321)
T 4f4c_A 875 STVITTLVSMVAGIGLAFFYGWQMALLIIAILPIVAFGQYLRGRRFTGKNVKSASEFADSGKIAIEAIENVRTVQALARE 954 (1321)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHTSCCSSCSTTTSSHHHHHHHHHHHHHHTHHHHHHTTTH
T ss_pred HHHHHHhhhHHHHeeeehHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhccch
Confidence 99999999999999999999999988877777776666666555444444444455667788899999999999999999
Q ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------------------HHHHHc----CCCc
Q 037346 849 LRFRDTNMKLIDEYSRPKFHIAGAMEWLRFCIDMLSSITFAFSL----------------------AFLISV----PNGI 902 (1156)
Q Consensus 849 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~----------------------~~~~~~----~~~~ 902 (1156)
+++.+++.+.++...+..++......+.......+..+..+++. ...+.. ....
T Consensus 955 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lv~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 1034 (1321)
T 4f4c_A 955 DTFYENFCEKLDIPHKEAIKEAFIQGLSYGCASSVLYLLNTCAYRMGLALIITDPPTMQPMRVLRVMYAITISTSTLGFA 1034 (1321)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHTTSSSSCSSCHHHHHHHHHHHHTTTSSTTGG
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhcCccccchHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999988887766555444333322222111111100 001111 1112
Q ss_pred cchHHHHHHHhHHHHHHHHhhcCCCCCcccccCCCCCCCCCCCCeEEEEEEEEEEcCC----------------CCceee
Q 037346 903 IHPYKNLERKIISVERILQCACIPSEPALVIEATKPNNSRPSHGEVNIRHLQVRYAPN----------------LPLVLR 966 (1156)
Q Consensus 903 ~~~~~~~~~~~~s~~Ri~~~~~~~~e~~~~~~~~~~~~~~p~~g~I~~~~Vsf~Y~~~----------------~~~vL~ 966 (1156)
.....+++..+.+++|+.++.+.+++.+. ...++..||..|.|+|+||+|+|+.+ +.++|+
T Consensus 1035 ~~~~~~~~~~~~a~~ri~~~l~~~~~~~~---~~~~~~~~~~~g~I~f~nVsf~Y~~~~~~~VL~~isl~I~~Ge~vaIV 1111 (1321)
T 4f4c_A 1035 TSYFPEYAKATFAGGIIFGMLRKISKIDS---LSLAGEKKKLYGKVIFKNVRFAYPERPEIEILKGLSFSVEPGQTLALV 1111 (1321)
T ss_dssp GGHHHHHHHHHHHHHHHHHHHHCCCSSCT---TCCCSBCCCCCCCEEEEEEEECCTTSCSSCSEEEEEEEECTTCEEEEE
T ss_pred HHHHHHHHHHHHHHHHHHHHhhCcccCCC---ccCCCCCCCCCCeEEEEEEEEeCCCCCCCccccceeEEECCCCEEEEE
Confidence 23347888999999999999987766432 23345568889999999999999532 223566
Q ss_pred CCCCCCHHHHHHHHhhcccCCCceEEEcCeeCCCCChHHHhhcCeeeccccccccccchhccCCC---CCCCHHHHHHHH
Q 037346 967 GRTGSGKSTLIQTLFRIVESTAGHILIDGKDISLIGLHDLRTRLSIIPQDPTMFEGTTRSNLDPL---EEHADEQIWEAL 1043 (1156)
Q Consensus 967 G~SGsGKSTL~~lL~rl~~p~~G~I~idG~di~~i~~~~LR~~i~~VpQdp~LF~gTIr~Nl~~~---~~~~deei~~al 1043 (1156)
||||||||||+++|+|||+|++|+|+|||+||+++++++||++|++|||||+||+|||||||.++ ++++|+|||+||
T Consensus 1112 G~SGsGKSTL~~lL~rl~~p~~G~I~iDG~di~~i~~~~lR~~i~~V~Qdp~LF~gTIreNI~~gld~~~~sd~ei~~Al 1191 (1321)
T 4f4c_A 1112 GPSGCGKSTVVALLERFYDTLGGEIFIDGSEIKTLNPEHTRSQIAIVSQEPTLFDCSIAENIIYGLDPSSVTMAQVEEAA 1191 (1321)
T ss_dssp CSTTSSTTSHHHHHTTSSCCSSSEEEETTEETTTBCHHHHHTTEEEECSSCCCCSEEHHHHHSSSSCTTTSCHHHHHHHH
T ss_pred CCCCChHHHHHHHHhcCccCCCCEEEECCEEhhhCCHHHHHhheEEECCCCEeeCccHHHHHhccCCCCCCCHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999998765 357899999999
Q ss_pred HHcCCChHHHhhcCCcccc------------------ccccccCCCEEEEecCCcCCCHHHHHHHHHHHHHhcCCceEEE
Q 037346 1044 DKCQLGDEVRKKKGKLDSQ------------------GRVLLKKSKVLVLDEATASVDTATDNQIQQTLRQHFSDCTVVT 1105 (1156)
Q Consensus 1044 ~~~~l~~~i~~lp~gl~s~------------------ARALLr~~~ILiLDEaTS~LD~~te~~I~~~l~~~~~~~TvI~ 1105 (1156)
++|+++++|.++|+||||. ||||||+|+|||||||||+||++||+.||++|++.+++||+|+
T Consensus 1192 ~~a~l~~~I~~Lp~GldT~vge~G~~LSgGQrQriaiARAllr~~~ILiLDEaTSaLD~~tE~~Iq~~l~~~~~~~TvI~ 1271 (1321)
T 4f4c_A 1192 RLANIHNFIAELPEGFETRVGDRGTQLSGGQKQRIAIARALVRNPKILLLDEATSALDTESEKVVQEALDRAREGRTCIV 1271 (1321)
T ss_dssp HHTTCHHHHHTSTTTTCSEETTTSCSSCHHHHHHHHHHHHHHSCCSEEEEESCCCSTTSHHHHHHHHHHTTTSSSSEEEE
T ss_pred HHhCChHHHHcCcCCCCCEecCCCcccCHHHHHHHHHHHHHHhCCCEEEEeCccccCCHHHHHHHHHHHHHHcCCCEEEE
Confidence 9999999999999999975 8999999999999999999999999999999999999999999
Q ss_pred eecCcccccccCEEEEEeCcEEeeecChhHHhcCCCChHHHHHHHHhccC
Q 037346 1106 IAHRITSVLDSAMVLLLNHGLIKEYDSPTKLLENKSSSFAQLVAEYTSSS 1155 (1156)
Q Consensus 1106 IaHrl~ti~~~D~I~Vl~~G~IvE~G~~~eLl~~~~g~f~~l~~~~~~~~ 1155 (1156)
|||||+||++||||+|||+|+|+|+|+|+||+++ +|.|++||++|...+
T Consensus 1272 IAHRLsTi~~aD~I~Vld~G~IvE~Gth~eLl~~-~g~y~~L~~~Q~~e~ 1320 (1321)
T 4f4c_A 1272 IAHRLNTVMNADCIAVVSNGTIIEKGTHTQLMSE-KGAYYKLTQKQMTEK 1320 (1321)
T ss_dssp ECSSSSTTTTCSEEEEESSSSEEEEECHHHHHHC-C--------------
T ss_pred eccCHHHHHhCCEEEEEECCEEEEECCHHHHHhC-CcHHHHHHHHHHhcc
Confidence 9999999999999999999999999999999986 799999999876543
|
| >3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.8e-125 Score=1252.03 Aligned_cols=1063 Identities=18% Similarity=0.232 Sum_probs=743.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC-------c------------c-----cchhhHH------HHH
Q 037346 78 SAWQEILFIAILALLYTLATYVGPYLIDNFVQYLNGRQ-------A------------F-----EYEGYVL------CLS 127 (1156)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~p~ll~~~i~~~~~~~-------~------------~-----~~~g~~l------~~~ 127 (1156)
.+|..+++++++.++..++..+.|++++.+++.+.... . . .+..+++ .++
T Consensus 45 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 124 (1284)
T 3g5u_A 45 LDRLYMLVGTLAAIIHGVALPLMMLIFGDMTDSFASVGNVSKNSTNMSEADKRAMFAKLEEEMTTYAYYYTGIGAGVLIV 124 (1284)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSSCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccccccccccccchhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 44556667777788888888888999988887653110 0 0 0111111 112
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccccCCCCHHHHHHHHHHHHHH-------HHHHHH----HHH-------
Q 037346 128 ERHWFFQVQQFGIRFRATLFAMIYNKGLTLSGQAKQGNTSGEIINLIAVDAER-------ALLILY----KKL------- 189 (1156)
Q Consensus 128 ~~~~~~~~~~~~~~~r~~l~~~i~~k~l~l~~~~~~~~~~g~i~nl~s~D~~~-------~~~ll~----~~l------- 189 (1156)
.....+...+.+.++...++..+|+|+++++...++++++|+++|++++|++. .+..+. ..+
T Consensus 125 ~~~~~~~~~~~~~~~~~~lr~~l~~~l~~~~~~~f~~~~~G~l~sr~~~D~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~ 204 (1284)
T 3g5u_A 125 AYIQVSFWCLAAGRQIHKIRQKFFHAIMNQEIGWFDVHDVGELNTRLTDDVSKINEGIGDKIGMFFQAMATFFGGFIIGF 204 (1284)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTTSTTHHHHSCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 22223345677888889999999999999999999999999999999999987 000000 000
Q ss_pred --HH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH---HHH--HHHHHHHHHH
Q 037346 190 --GL-ASIATLLATAIVMLANFPLGRLREKFQDKFMETKDRRIKATSEILRNMRILKLQGWE---LKK--NETAWLKKSV 261 (1156)
Q Consensus 190 --g~-~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~r~~~~~e~l~~i~~IK~~~~e---~r~--~e~~~~~~~~ 261 (1156)
.| .+++.++++++++++...+.+...+..++.++..++..+.+.|.++||++||.|++| .++ ...+..++..
T Consensus 205 ~~~~~l~l~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~~ikaf~~e~~~~~~~~~~~~~~~~~~ 284 (1284)
T 3g5u_A 205 TRGWKLTLVILAISPVLGLSAGIWAKILSSFTDKELHAYAKAGAVAEEVLAAIRTVIAFGGQKKELERYNNNLEEAKRLG 284 (1284)
T ss_dssp HTTSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCCCCHHHHHTTCCCCSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHhcchHHHHHHHHHHHHHHHHHH
Confidence 00 111122222333334445566677777777788888888999999999999999998 111 1111111111
Q ss_pred ----HHHHHHHHHH--HHHHHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 037346 262 ----YTEAMISFFC--WGAPTFVSVVTFGSCILLGIPLESGMILSALTTFKILQEPIYYLPESISMMIQAKVPLDRIASF 335 (1156)
Q Consensus 262 ----~~~~~~~~~~--~~~~~~~~~~~f~~~~~~~~~lt~~~~ft~l~~~~~l~~pl~~l~~~~~~~~~a~~s~~Ri~~f 335 (1156)
...+....+. ......+..++++.+.+..+.+++|.+++++.++..+..|+..+...+..+.++.++++|+.++
T Consensus 285 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lv~~g~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ri~~~ 364 (1284)
T 3g5u_A 285 IKKAITANISMGAAFLLIYASYALAFWYGTSLVISKEYSIGQVLTVFFSVLIGAFSVGQASPNIEAFANARGAAYEVFKI 364 (1284)
T ss_dssp HTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSCSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1111111111 1122334466788888888889999999988888888899999999999999999999999999
Q ss_pred hccCCCCcc-ccccCCCCCCCccEEEeeeEEEeCCCCCCCccccceEEeeCCeEEEEEcCCCCChHHHHHHHhCCCCCCC
Q 037346 336 LCLEGLQTD-VLEKMPRGNSDTAIEIIDGSFSWDFSSPNPTLRNINLKVFHGMRVAVCGTVGSGKSSCLSCILGGVPKES 414 (1156)
Q Consensus 336 l~~~~~~~~-~~~~~~~~~~~~~i~~~~~~f~~~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKSTll~~i~g~~~~~~ 414 (1156)
++.++..+. .....+.....+.|+++|++|+|+.+++.++|+|+||+|++||+++||||||||||||+++|+|+++|++
T Consensus 365 l~~~~~~~~~~~~~~~~~~~~g~i~~~~v~~~y~~~~~~~vL~~isl~i~~G~~~~ivG~sGsGKSTl~~ll~g~~~~~~ 444 (1284)
T 3g5u_A 365 IDNKPSIDSFSKSGHKPDNIQGNLEFKNIHFSYPSRKEVQILKGLNLKVKSGQTVALVGNSGCGKSTTVQLMQRLYDPLD 444 (1284)
T ss_dssp TSCCCCCSSCCSSCCCCTTCCCCEEEEEEEECCSSTTSCCSEEEEEEEECTTCEEEEECCSSSSHHHHHHHTTTSSCCSE
T ss_pred HcCCCcCCcccccCCCCCCCCCeEEEEEEEEEcCCCCCCcceecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCC
Confidence 987543221 1111111223467999999999986555689999999999999999999999999999999999999999
Q ss_pred cEEEEcCe-------------EEEEecCCcCCCccHHHHhhcCCC-CCHHHHHHHHHHhCCchhhhhCCCCCccccccCC
Q 037346 415 GIIRLCGT-------------KAYVAQSPWIQSGKIEENILFGKE-MDRERYERVLEACSLKKDLEVLPFGDQTIIGERG 480 (1156)
Q Consensus 415 G~i~~~g~-------------~~~v~Q~~~~~~~ti~eni~~~~~-~~~~~~~~~~~~~~l~~~~~~~~~g~~t~v~~~g 480 (1156)
|+|.++|. ++||||+|++|++||+|||.+|.+ .++++++++++.+++.+++..+|+|++|.+|++|
T Consensus 445 G~i~i~g~~i~~~~~~~~r~~i~~v~Q~~~l~~~ti~eNi~~g~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g 524 (1284)
T 3g5u_A 445 GMVSIDGQDIRTINVRYLREIIGVVSQEPVLFATTIAENIRYGREDVTMDEIEKAVKEANAYDFIMKLPHQFDTLVGERG 524 (1284)
T ss_dssp EEEEETTEEGGGSCHHHHHHHEEEECSSCCCCSSCHHHHHHHHCSSCCHHHHHHHHHHTTCHHHHHHSTTGGGCCCSSSS
T ss_pred eEEEECCEEHHhCCHHHHHhheEEEcCCCccCCccHHHHHhcCCCCCCHHHHHHHHHHhCcHHHHHhccccccccccCCC
Confidence 99999994 899999999999999999999875 6788899999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHhhccCCCeeeeeCCCCCcCHHHHHHHHHHHHh-cCCCEEEEEccCCCccccCCEEEEEeCCeEEE
Q 037346 481 INLSGGQKQRIQIARPLYQDADIFLLDDPFSPVDDHTGAHLFKFCWV-SSSKTVIYATHQVEFLPAADLILVIKDGKITQ 559 (1156)
Q Consensus 481 ~~LSgGqkqRi~lAral~~~~~illlDep~s~lD~~~~~~i~~~~~~-~~~~tvi~vtH~~~~~~~~d~i~~l~~G~i~~ 559 (1156)
.+|||||||||+|||||+++|+|||||||||+||+++++.+.+.+.. .+|+|+|+||||++++..||+|++|++|+|++
T Consensus 525 ~~LSgGq~QriaiARal~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~~~t~i~itH~l~~i~~~d~i~vl~~G~i~~ 604 (1284)
T 3g5u_A 525 AQLSGGQKQRIAIARALVRNPKILLLDEATSALDTESEAVVQAALDKAREGRTTIVIAHRLSTVRNADVIAGFDGGVIVE 604 (1284)
T ss_dssp CSSCHHHHHHHHHHHHHHHCCSEEEEESTTCSSCHHHHHHHHHHHHHHHTTSEEEEECSCHHHHTTCSEEEECSSSCCCC
T ss_pred CccCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHcCCCEEEEEecCHHHHHcCCEEEEEECCEEEE
Confidence 99999999999999999999999999999999999999887765533 57899999999999999999999999999999
Q ss_pred ccChHHHHhcCcchHHHHHhhhhhccCCCCCCCCCcccccccccCCCCCCCcccchhcccccCCCCcccccCccCcchhH
Q 037346 560 AGKYSDILNSGTDFMELVGAHKQALSGLDSIDRGPVSERKSINKENDGTSTTNEIVNKEENKNFQSDDEAALPKGQLVQE 639 (1156)
Q Consensus 560 ~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 639 (1156)
.|+|+++++.++.|.+++..+..........+... ............................... ..........+
T Consensus 605 ~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~ 681 (1284)
T 3g5u_A 605 QGNHDELMREKGIYFKLVMTQTAGNEIELGNEACK-SKDEIDNLDMSSKDSGSSLIRRRSTRKSICG--PHDQDRKLSTK 681 (1284)
T ss_dssp EECHHHHHHTTSHHHHHHHHTC----------------------------------------------------------
T ss_pred ECCHHHHHhCCCHHHHHHHHhhhcccccccccccc-ccccccccccccccccccccccccccccccc--ccccccccchh
Confidence 99999999888888877654432111000000000 0000000000000000000000000000000 00000000000
Q ss_pred HH--HhcCcccHHHHHHHHHHhccchHHHHHHHHHHHHHHHHhhhhhhhh----hccccccccCCCCCchhhHHHHH---
Q 037346 640 EE--REKGKVGFSVYWKYMTTAYGGVLVPFILLAQIIFQIFQIGSNYWMA----WATPVAKDVNPAVGASTLIIVYV--- 710 (1156)
Q Consensus 640 e~--~~~g~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~----~~~~~~~~~~~~~~~~~~~~~~~--- 710 (1156)
+. ......++..++.+.+.......+. +++.++..++....++++. .+...............+..+|+
T Consensus 682 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~ 759 (1284)
T 3g5u_A 682 EALDEDVPPASFWRILKLNSTEWPYFVVG--IFCAIINGGLQPAFSVIFSKVVGVFTNGGPPETQRQNSNLFSLLFLILG 759 (1284)
T ss_dssp --CCCCCSCCCTTHHHHHHHHTCCCCHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHSSCSTTHHHHHHHHHHHHHHHHH
T ss_pred hhhhccccchHHHHHHHHhcchHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHhccCcchhhHHHHHHHHHHHHHHH
Confidence 10 0111223334444544433222221 1222222222222222222 22110000000000011111111
Q ss_pred ---------------HHHHHHHHHHHHHHHHHhccccccccc--cccccchhhhhcccccccchhhhcccchHHHHHHHH
Q 037346 711 ---------------GAGYKTATQLFNKMHVCIFRAPMYFFD--STPSGRILNRVSENVKWADQSAADMDIPYDIGAFAF 773 (1156)
Q Consensus 711 ---------------~~~~~~~~~l~~~l~~~ll~~p~~ff~--~~~~G~il~R~s~d~~~~d~~~~d~~l~~~~~~~~~ 773 (1156)
..+.++..++|.+++++++++|++||+ .+++|++++|++ .|+..++..++..+..++.
T Consensus 760 i~~~~~~~~~~~~~~~~~~~~~~~lr~~l~~~ll~~~~~ff~~~~~~~G~l~~rl~-----~D~~~i~~~~~~~l~~~~~ 834 (1284)
T 3g5u_A 760 IISFITFFLQGFTFGKAGEILTKRLRYMVFKSMLRQDVSWFDDPKNTTGALTTRLA-----NDAAQVKGATGSRLAVIFQ 834 (1284)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCSHHHHSCSCCHHHHHHHHH-----HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHcCCCCCHHHHHHHHH-----HHHHHHHHHHHHHHHHHHH
Confidence 156788999999999999999999999 489999999999 8888888888888888888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhChHHHHHHhhccchhhhhhcchHHHHHH
Q 037346 774 SMIQLLGIIVVMSLVAWQVLIVFVPVIATFIWYQQYYITSTRELSRLIGVCKAPVIQQFSETISGSTTIRSLDQELRFRD 853 (1156)
Q Consensus 774 ~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~e~l~Gi~tIra~~~e~~~~~ 853 (1156)
.++.+++.+++++.++|.++++++.++++++++...+.+..+..........+.....+.|+++|+++||+|++|+++.+
T Consensus 835 ~~~~~~~~~i~~~~~~~~l~lv~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~ti~a~~~e~~~~~ 914 (1284)
T 3g5u_A 835 NIANLGTGIIISLIYGWQLTLLLLAIVPIIAIAGVVEMKMLSGQALKDKKELEGSGKIATEAIENFRTVVSLTREQKFET 914 (1284)
T ss_dssp HHHHHHHHHHHHHSSCSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCTTTTTCSSHHHHHH
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHH
Confidence 88888888889999999876655544444433333333333333333334445566789999999999999999999999
Q ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-cCCCc-----------------------cchHHHH
Q 037346 854 TNMKLIDEYSRPKFHIAGAMEWLRFCIDMLSSITFAFSLAFLIS-VPNGI-----------------------IHPYKNL 909 (1156)
Q Consensus 854 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~-~~~~~-----------------------~~~~~~~ 909 (1156)
++.+..+...+..........+.......+..+..++...+... ...+. .....++
T Consensus 915 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 994 (1284)
T 3g5u_A 915 MYAQSLQIPYRNAMKKAHVFGITFSFTQAMMYFSYAAAFRFGAYLVTQQLMTFENVLLVFSAIVFGAMAVGQVSSFAPDY 994 (1284)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCSSSCSCSTTHHHHHHHHHHHHHHHHHHTSSSCCS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99998887766555443333222222222221111111111000 00000 0111234
Q ss_pred HHHhHHHHHHHHhhcCCCCCcccccCCCCCCCCCCCCeEEEEEEEEEEcC----------------CCCceeeCCCCCCH
Q 037346 910 ERKIISVERILQCACIPSEPALVIEATKPNNSRPSHGEVNIRHLQVRYAP----------------NLPLVLRGRTGSGK 973 (1156)
Q Consensus 910 ~~~~~s~~Ri~~~~~~~~e~~~~~~~~~~~~~~p~~g~I~~~~Vsf~Y~~----------------~~~~vL~G~SGsGK 973 (1156)
.....+++|+.++.+.+++..... ......++..|.|+|+||+|+|+. |+.++|+|||||||
T Consensus 995 ~~~~~a~~ri~~~l~~~~~~~~~~--~~~~~~~~~~g~i~~~~v~~~y~~~~~~~~l~~vsl~i~~Ge~v~ivG~sGsGK 1072 (1284)
T 3g5u_A 995 AKATVSASHIIRIIEKTPEIDSYS--TQGLKPNMLEGNVQFSGVVFNYPTRPSIPVLQGLSLEVKKGQTLALVGSSGCGK 1072 (1284)
T ss_dssp THHHHHHHHHHHHHHSCCSSSSCC--SSCCCTTTTSCCEEEEEEEBCCSCGGGCCSBSSCCEEECSSSEEEEECSSSTTH
T ss_pred HHHHHHHHHHHHHHcCCCcccccc--cccccccCCCCcEEEEEEEEECCCCCCCeeecceeEEEcCCCEEEEECCCCCCH
Confidence 567788999999988766543211 111223455789999999999953 22345779999999
Q ss_pred HHHHHHHhhcccCCCceEEEcCeeCCCCChHHHhhcCeeeccccccccccchhccCCCC---CCCHHHHHHHHHHcCCCh
Q 037346 974 STLIQTLFRIVESTAGHILIDGKDISLIGLHDLRTRLSIIPQDPTMFEGTTRSNLDPLE---EHADEQIWEALDKCQLGD 1050 (1156)
Q Consensus 974 STL~~lL~rl~~p~~G~I~idG~di~~i~~~~LR~~i~~VpQdp~LF~gTIr~Nl~~~~---~~~deei~~al~~~~l~~ 1050 (1156)
|||+++|+|+|+|++|+|.+||+|+++++++++|++|++|||||.+|++||+|||.++. ..++++++++++++++++
T Consensus 1073 STl~~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~l~~~ti~eNi~~~~~~~~~~~~~i~~~~~~~~~~~ 1152 (1284)
T 3g5u_A 1073 STVVQLLERFYDPMAGSVFLDGKEIKQLNVQWLRAQLGIVSQEPILFDCSIAENIAYGDNSRVVSYEEIVRAAKEANIHQ 1152 (1284)
T ss_dssp HHHHHHHTTSSCCSEEEEESSSSCTTSSCHHHHTTSCEEEESSCCCCSSBHHHHHTCCCSSCCCCHHHHHHHHHHHTCHH
T ss_pred HHHHHHHhcCcCCCCCEEEECCEEcccCCHHHHHhceEEECCCCccccccHHHHHhccCCCCCCCHHHHHHHHHHhCcHH
Confidence 99999999999999999999999999999999999999999999999999999998764 357899999999999999
Q ss_pred HHHhhcCCcccc------------------ccccccCCCEEEEecCCcCCCHHHHHHHHHHHHHhcCCceEEEeecCccc
Q 037346 1051 EVRKKKGKLDSQ------------------GRVLLKKSKVLVLDEATASVDTATDNQIQQTLRQHFSDCTVVTIAHRITS 1112 (1156)
Q Consensus 1051 ~i~~lp~gl~s~------------------ARALLr~~~ILiLDEaTS~LD~~te~~I~~~l~~~~~~~TvI~IaHrl~t 1112 (1156)
++.++|+||||. ||||+++|+|||||||||+||+++++.|++.|++..+++|+|+||||+++
T Consensus 1153 ~i~~l~~gldt~vge~G~~LSgGq~Qrv~iARal~~~p~iLiLDEpTs~lD~~~~~~i~~~l~~~~~~~tvi~isH~l~~ 1232 (1284)
T 3g5u_A 1153 FIDSLPDKYNTRVGDKGTQLSGGQKQRIAIARALVRQPHILLLDEATSALDTESEKVVQEALDKAREGRTCIVIAHRLST 1232 (1284)
T ss_dssp HHSSTTTGGGCBCSTTSCSSCHHHHHHHHHHHHHHHCCSSEEEESCSSSCCHHHHHHHHHHHHHHSSSSCEEEECSCTTG
T ss_pred HHHhCccccccccCCCCCccCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHhCCCCEEEEEecCHHH
Confidence 999999999874 89999999999999999999999999999999998899999999999999
Q ss_pred ccccCEEEEEeCcEEeeecChhHHhcCCCChHHHHHHHHhc
Q 037346 1113 VLDSAMVLLLNHGLIKEYDSPTKLLENKSSSFAQLVAEYTS 1153 (1156)
Q Consensus 1113 i~~~D~I~Vl~~G~IvE~G~~~eLl~~~~g~f~~l~~~~~~ 1153 (1156)
+.+||||+||++|+|+|.|+|+||+++ +|.|++||+.+..
T Consensus 1233 i~~~dri~vl~~G~i~~~g~~~~l~~~-~g~y~~l~~~q~~ 1272 (1284)
T 3g5u_A 1233 IQNADLIVVIQNGKVKEHGTHQQLLAQ-KGIYFSMVSVQAG 1272 (1284)
T ss_dssp GGSCSEEEEEETBEEEEEECHHHHHHS-CSHHHHHHHHHC-
T ss_pred HHcCCEEEEEECCEEEEECCHHHHHhC-CCHHHHHHHHHhh
Confidence 999999999999999999999999985 7999999987653
|
| >4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A | Back alignment and structure |
|---|
Probab=100.00 E-value=8.4e-69 Score=659.60 Aligned_cols=505 Identities=22% Similarity=0.248 Sum_probs=402.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcc---c-------chhhHH-------HHHHHHHHHHH
Q 037346 73 KVLFFSAWQEILFIAILALLYTLATYVGPYLIDNFVQYLNGRQAF---E-------YEGYVL-------CLSERHWFFQV 135 (1156)
Q Consensus 73 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~p~ll~~~i~~~~~~~~~---~-------~~g~~l-------~~~~~~~~~~~ 135 (1156)
..+++.+++.++.++++.++..++.++.|++++.+++.+...... . ..+.++ .++.....+..
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (578)
T 4a82_A 6 LQFVKPYKYRIFATIIVGIIKFGIPMLIPLLIKYAIDGVINNHALTTDEKVHHLTIAIGIALFIFVIVRPPIEFIRQYLA 85 (578)
T ss_dssp HHHHGGGHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 346677888888999999999999999999999999987543221 0 011111 12222333456
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCccccCCCCHHHHHHHHHHHHHH---------------------HHHHHHHHHHHHHH
Q 037346 136 QQFGIRFRATLFAMIYNKGLTLSGQAKQGNTSGEIINLIAVDAER---------------------ALLILYKKLGLASI 194 (1156)
Q Consensus 136 ~~~~~~~r~~l~~~i~~k~l~l~~~~~~~~~~g~i~nl~s~D~~~---------------------~~~ll~~~lg~~~l 194 (1156)
.+.+.++...++..+|+|.++++...+++.++|+++|++++|++. ++++++..-+..++
T Consensus 86 ~~~~~~~~~~lr~~l~~~ll~~~~~~~~~~~~G~l~~r~~~D~~~i~~~~~~~~~~~~~~~~~~i~~~~~l~~~~~~l~l 165 (578)
T 4a82_A 86 QWTSNKILYDIRKKLYNHLQALSARFYANNQVGQVISRVINDVEQTKDFILTGLMNIWLDCITIIIALSIMFFLDVKLTL 165 (578)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHSCHHHHHTSCHHHHHHHHHHHHHHTHHHHHCCCCCHHHHHHHHHHHHHHHHHHCTTTHH
T ss_pred HHHHHHHHHHHHHHHHHHHHCCCHHHHcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Confidence 778899999999999999999999999999999999999999997 11112222122233
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH------HH---HHHHHHHHHHHHH
Q 037346 195 ATLLATAIVMLANFPLGRLREKFQDKFMETKDRRIKATSEILRNMRILKLQGWELK------KN---ETAWLKKSVYTEA 265 (1156)
Q Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~r~~~~~e~l~~i~~IK~~~~e~r------~~---e~~~~~~~~~~~~ 265 (1156)
++++++++++++...+.+...+..++..+..+++.+.+.|.++|+++||+|++|.+ +. ..+...+.....+
T Consensus 166 ~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~ 245 (578)
T 4a82_A 166 AALFIFPFYILTVYVFFGRLRKLTRERSQALAEVQGFLHERVQGISVVKSFAIEDNEAKNFDKKNTNFLTRALKHTRWNA 245 (578)
T ss_dssp HHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444555556677788888888899999999999999999999999999911 11 1111111111111
Q ss_pred HHHHHHHHH--HHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCc
Q 037346 266 MISFFCWGA--PTFVSVVTFGSCILLGIPLESGMILSALTTFKILQEPIYYLPESISMMIQAKVPLDRIASFLCLEGLQT 343 (1156)
Q Consensus 266 ~~~~~~~~~--~~~~~~~~f~~~~~~~~~lt~~~~ft~l~~~~~l~~pl~~l~~~~~~~~~a~~s~~Ri~~fl~~~~~~~ 343 (1156)
....+.... ...+.+++++.+.+..+.+++|.+++++.++..+..|+..++..+..+.++.+|++||.++++.++...
T Consensus 246 ~~~~~~~~~~~~~~~~v~~~g~~~v~~g~lt~g~l~~~~~~~~~~~~~l~~l~~~~~~~~~~~~s~~ri~~~l~~~~~~~ 325 (578)
T 4a82_A 246 YSFAAINTVTDIGPIIVIGVGAYLAISGSITVGTLAAFVGYLELLFGPLRRLVASFTTLTQSFASMDRVFQLIDEDYDIK 325 (578)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHTHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHTCCCSSC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccc
Confidence 111111111 122345677888888889999999999999999999999999999999999999999999998765432
Q ss_pred cccccCCCCCCCccEEEeeeEEEeCCCCCCCccccceEEeeCCeEEEEEcCCCCChHHHHHHHhCCCCCCCcEEEEcC--
Q 037346 344 DVLEKMPRGNSDTAIEIIDGSFSWDFSSPNPTLRNINLKVFHGMRVAVCGTVGSGKSSCLSCILGGVPKESGIIRLCG-- 421 (1156)
Q Consensus 344 ~~~~~~~~~~~~~~i~~~~~~f~~~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKSTll~~i~g~~~~~~G~i~~~g-- 421 (1156)
......+.....+.++++|++|+|+. +++++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|
T Consensus 326 ~~~~~~~~~~~~~~i~~~~v~~~y~~-~~~~~l~~isl~i~~G~~~~ivG~sGsGKSTll~~l~g~~~p~~G~i~~~g~~ 404 (578)
T 4a82_A 326 NGVGAQPIEIKQGRIDIDHVSFQYND-NEAPILKDINLSIEKGETVAFVGMSGGGKSTLINLIPRFYDVTSGQILIDGHN 404 (578)
T ss_dssp CCTTCCCCCCCSCCEEEEEEEECSCS-SSCCSEEEEEEEECTTCEEEEECSTTSSHHHHHTTTTTSSCCSEEEEEETTEE
T ss_pred CCCCccccCCCCCeEEEEEEEEEcCC-CCCcceeeeEEEECCCCEEEEECCCCChHHHHHHHHhcCCCCCCcEEEECCEE
Confidence 21111111223457999999999974 246799999999999999999999999999999999999999999999999
Q ss_pred -----------eEEEEecCCcCCCccHHHHhhcCCC-CCHHHHHHHHHHhCCchhhhhCCCCCccccccCCCCCCHHHHH
Q 037346 422 -----------TKAYVAQSPWIQSGKIEENILFGKE-MDRERYERVLEACSLKKDLEVLPFGDQTIIGERGINLSGGQKQ 489 (1156)
Q Consensus 422 -----------~~~~v~Q~~~~~~~ti~eni~~~~~-~~~~~~~~~~~~~~l~~~~~~~~~g~~t~v~~~g~~LSgGqkq 489 (1156)
+++||||+|++|++||+|||.+|.+ .++++..++++.+++.++++.+|+|++|.+|++|.+|||||||
T Consensus 405 ~~~~~~~~~r~~i~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~g~~t~~~~~g~~LSgGq~Q 484 (578)
T 4a82_A 405 IKDFLTGSLRNQIGLVQQDNILFSDTVKENILLGRPTATDEEVVEAAKMANAHDFIMNLPQGYDTEVGERGVKLSGGQKQ 484 (578)
T ss_dssp GGGSCHHHHHHTEEEECSSCCCCSSBHHHHHGGGCSSCCHHHHHHHHHHTTCHHHHHTSTTGGGCBCCGGGTTSCHHHHH
T ss_pred hhhCCHHHHhhheEEEeCCCccCcccHHHHHhcCCCCCCHHHHHHHHHHhCcHHHHHhCcchhhhhhccCCCcCCHHHHH
Confidence 3899999999999999999999875 5677889999999999999999999999999999999999999
Q ss_pred HHHHHHhhccCCCeeeeeCCCCCcCHHHHHHHHHHHHh-cCCCEEEEEccCCCccccCCEEEEEeCCeEEEccChHHHHh
Q 037346 490 RIQIARPLYQDADIFLLDDPFSPVDDHTGAHLFKFCWV-SSSKTVIYATHQVEFLPAADLILVIKDGKITQAGKYSDILN 568 (1156)
Q Consensus 490 Ri~lAral~~~~~illlDep~s~lD~~~~~~i~~~~~~-~~~~tvi~vtH~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~ 568 (1156)
|++||||++++|+++|||||||+||+++++.+.+.+.. .+++|+|+||||++.+..||+|++|++|++++.|+++|+++
T Consensus 485 rv~lAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~t~i~itH~l~~~~~~d~i~~l~~G~i~~~g~~~el~~ 564 (578)
T 4a82_A 485 RLSIARIFLNNPPILILDEATSALDLESESIIQEALDVLSKDRTTLIVAHRLSTITHADKIVVIENGHIVETGTHRELIA 564 (578)
T ss_dssp HHHHHHHHHHCCSEEEEESTTTTCCHHHHHHHHHHHHHHTTTSEEEEECSSGGGTTTCSEEEEEETTEEEEEECHHHHHH
T ss_pred HHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHcCCCEEEEEecCHHHHHcCCEEEEEECCEEEEECCHHHHHh
Confidence 99999999999999999999999999999988776544 56899999999999998999999999999999999999998
Q ss_pred cCcchHHHHH
Q 037346 569 SGTDFMELVG 578 (1156)
Q Consensus 569 ~~~~~~~~~~ 578 (1156)
.++.|.+++.
T Consensus 565 ~~~~~~~~~~ 574 (578)
T 4a82_A 565 KQGAYEHLYS 574 (578)
T ss_dssp TTSHHHHHHT
T ss_pred CCcHHHHHHH
Confidence 8777877764
|
| >3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.5e-68 Score=657.22 Aligned_cols=511 Identities=20% Similarity=0.248 Sum_probs=401.6
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccc---chhhHH-------HHHHHHHHHHHHHH
Q 037346 69 LRLAKVLFFSAWQEILFIAILALLYTLATYVGPYLIDNFVQYLNGRQAFE---YEGYVL-------CLSERHWFFQVQQF 138 (1156)
Q Consensus 69 ~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~p~ll~~~i~~~~~~~~~~---~~g~~l-------~~~~~~~~~~~~~~ 138 (1156)
.+.++.+++.+++.+++++++.++..++.+++|++++.++|......... ..++++ .++.....+...+.
T Consensus 11 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (587)
T 3qf4_A 11 SKTLARYLKPYWIFAVLAPLFMVVEVICDLSQPTLLARIVDEGIARGDFSLVLKTGILMLIVALIGAVGGIGCTVFASYA 90 (587)
T ss_dssp CCCGGGGTGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445577888999999999999999999999999999999865332211 111111 11112222345567
Q ss_pred HHHHHHHHHHHHHHHHhcCCccccCCCCHHHHHHHHHHHHHHH---H------------------HHHHHHHHHHHHHHH
Q 037346 139 GIRFRATLFAMIYNKGLTLSGQAKQGNTSGEIINLIAVDAERA---L------------------LILYKKLGLASIATL 197 (1156)
Q Consensus 139 ~~~~r~~l~~~i~~k~l~l~~~~~~~~~~g~i~nl~s~D~~~~---~------------------~ll~~~lg~~~l~~~ 197 (1156)
+.++...++..+|+|+++++...+++.++|+++|++++|++.. + +++++.-...+++.+
T Consensus 91 ~~~~~~~lr~~l~~~ll~~~~~~~~~~~~G~l~~r~~~D~~~i~~~~~~~~~~~~~~~~~~i~~~~~l~~~~~~l~l~~l 170 (587)
T 3qf4_A 91 SQNFGADLRRDLFRKVLSFSISNVNRFHTSSLITRLTNDVTQLQNLVMMLLRIVVRAPLLFVGGIVMAVSINVKLSSVLI 170 (587)
T ss_dssp HHHHHHHHHHHHHHHHHHCCHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHCTTTTHHHH
T ss_pred HHHHHHHHHHHHHHHHHCCCHHHHccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7888888899999999999998888999999999999999870 0 000000000111222
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH-----HHHHHHHHH----HHHHHHH
Q 037346 198 LATAIVMLANFPLGRLREKFQDKFMETKDRRIKATSEILRNMRILKLQGWELKKN-----ETAWLKKSV----YTEAMIS 268 (1156)
Q Consensus 198 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~r~~~~~e~l~~i~~IK~~~~e~r~~-----e~~~~~~~~----~~~~~~~ 268 (1156)
+++++++++..++.+...+..++.++..+++.+.+.|.++||++||+|++|.+.. ..+..++.. ...+...
T Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 250 (587)
T 3qf4_A 171 FLIPPIVLLFVWLTKKGNPLFRKIQESTDEVNRVVRENLLGVRVVRAFRREEYENENFRKANESLRRSIISAFSLIVFAL 250 (587)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2333334445566777778888888999999999999999999999999991110 011111111 1111111
Q ss_pred HH--HHHHHHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCcccc
Q 037346 269 FF--CWGAPTFVSVVTFGSCILLGIPLESGMILSALTTFKILQEPIYYLPESISMMIQAKVPLDRIASFLCLEGLQTDVL 346 (1156)
Q Consensus 269 ~~--~~~~~~~~~~~~f~~~~~~~~~lt~~~~ft~l~~~~~l~~pl~~l~~~~~~~~~a~~s~~Ri~~fl~~~~~~~~~~ 346 (1156)
.+ .......+.+++++.+.+.++.+++|.+++++.++..+..|+..++..+..+.++.+|++|+.++++.++......
T Consensus 251 ~~~~~~~~~~~~~vl~~g~~~v~~g~lt~g~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~s~~ri~~~l~~~~~~~~~~ 330 (587)
T 3qf4_A 251 PLFIFIVNMGMIAVLWFGGVLVRNNQMEIGSIMAYTNYLMQIMFSLMMIGNILNFIVRASASAKRVLEVLNEKPAIEEAD 330 (587)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCSCCCCT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccCCCC
Confidence 11 1112234456678888888999999999999999999999999999999999999999999999998764322111
Q ss_pred ccCCCCCCCccEEEeeeEEEeCCCCCCCccccceEEeeCCeEEEEEcCCCCChHHHHHHHhCCCCCCCcEEEEcC-----
Q 037346 347 EKMPRGNSDTAIEIIDGSFSWDFSSPNPTLRNINLKVFHGMRVAVCGTVGSGKSSCLSCILGGVPKESGIIRLCG----- 421 (1156)
Q Consensus 347 ~~~~~~~~~~~i~~~~~~f~~~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKSTll~~i~g~~~~~~G~i~~~g----- 421 (1156)
...+.....+.|+++|++|+|+. +++++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|
T Consensus 331 ~~~~~~~~~~~i~~~~v~~~y~~-~~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~i~g~~i~~ 409 (587)
T 3qf4_A 331 NALALPNVEGSVSFENVEFRYFE-NTDPVLSGVNFSVKPGSLVAVLGETGSGKSTLMNLIPRLIDPERGRVEVDELDVRT 409 (587)
T ss_dssp TCBCCSCCCCCEEEEEEEECSSS-SSCCSEEEEEEEECTTCEEEEECSSSSSHHHHHHTTTTSSCCSEEEEEESSSBGGG
T ss_pred CccccCCCCCcEEEEEEEEEcCC-CCCcceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCccCCCcEEEECCEEccc
Confidence 11111123457999999999974 346899999999999999999999999999999999999999999999998
Q ss_pred --------eEEEEecCCcCCCccHHHHhhcCCC-CCHHHHHHHHHHhCCchhhhhCCCCCccccccCCCCCCHHHHHHHH
Q 037346 422 --------TKAYVAQSPWIQSGKIEENILFGKE-MDRERYERVLEACSLKKDLEVLPFGDQTIIGERGINLSGGQKQRIQ 492 (1156)
Q Consensus 422 --------~~~~v~Q~~~~~~~ti~eni~~~~~-~~~~~~~~~~~~~~l~~~~~~~~~g~~t~v~~~g~~LSgGqkqRi~ 492 (1156)
+++||||+|++|++||+|||.++.+ .+++++.++++.+++.++++.+|+|++|.+|++|.+||||||||++
T Consensus 410 ~~~~~~r~~i~~v~Q~~~lf~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~~~~~~~~~~LSgGqrQrv~ 489 (587)
T 3qf4_A 410 VKLKDLRGHISAVPQETVLFSGTIKENLKWGREDATDDEIVEAAKIAQIHDFIISLPEGYDSRVERGGRNFSGGQKQRLS 489 (587)
T ss_dssp BCHHHHHHHEEEECSSCCCCSEEHHHHHTTTCSSCCHHHHHHHHHHTTCHHHHHTSSSGGGCEECSSSCSSCHHHHHHHH
T ss_pred CCHHHHHhheEEECCCCcCcCccHHHHHhccCCCCCHHHHHHHHHHhCcHHHHHhcccchhhHhcCCCCCcCHHHHHHHH
Confidence 3799999999999999999999875 6778889999999999999999999999999999999999999999
Q ss_pred HHHhhccCCCeeeeeCCCCCcCHHHHHHHHHHHHh-cCCCEEEEEccCCCccccCCEEEEEeCCeEEEccChHHHHhcCc
Q 037346 493 IARPLYQDADIFLLDDPFSPVDDHTGAHLFKFCWV-SSSKTVIYATHQVEFLPAADLILVIKDGKITQAGKYSDILNSGT 571 (1156)
Q Consensus 493 lAral~~~~~illlDep~s~lD~~~~~~i~~~~~~-~~~~tvi~vtH~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~~~ 571 (1156)
||||++++|+++|||||||+||+++++++.+.+.. .+|+|+|+||||++.+..||+|++|++|+|++.|+++|+++.++
T Consensus 490 lARal~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~l~~~~~~d~i~vl~~G~i~~~g~~~el~~~~~ 569 (587)
T 3qf4_A 490 IARALVKKPKVLILDDCTSSVDPITEKRILDGLKRYTKGCTTFIITQKIPTALLADKILVLHEGKVAGFGTHKELLEHCK 569 (587)
T ss_dssp HHHHHHTCCSEEEEESCCTTSCHHHHHHHHHHHHHHSTTCEEEEEESCHHHHTTSSEEEEEETTEEEEEECHHHHHHHCH
T ss_pred HHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHhCCCCEEEEEecChHHHHhCCEEEEEECCEEEEECCHHHHHhCCc
Confidence 99999999999999999999999999999887644 56899999999999998999999999999999999999998877
Q ss_pred chHHHHHhh
Q 037346 572 DFMELVGAH 580 (1156)
Q Consensus 572 ~~~~~~~~~ 580 (1156)
.|.+++..+
T Consensus 570 ~~~~~~~~~ 578 (587)
T 3qf4_A 570 PYREIYESQ 578 (587)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 788777543
|
| >3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=100.00 E-value=7.8e-68 Score=652.91 Aligned_cols=504 Identities=20% Similarity=0.283 Sum_probs=399.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcccc---hhhHH-------HHHHHHHHHHHHHHHHHHHH
Q 037346 75 LFFSAWQEILFIAILALLYTLATYVGPYLIDNFVQYLNGRQAFEY---EGYVL-------CLSERHWFFQVQQFGIRFRA 144 (1156)
Q Consensus 75 l~~~~~~~~~~~~~~~~~~~~~~~~~p~ll~~~i~~~~~~~~~~~---~g~~l-------~~~~~~~~~~~~~~~~~~r~ 144 (1156)
+++.+++.++..+++.++..++.++.|++++.+++.+........ ..+++ .++.....+...+.+.++..
T Consensus 31 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 110 (598)
T 3qf4_B 31 YLRPHTFTLIMVFVFVTVSSILGVLSPYLIGKTIDVVFVPRRFDLLPRYMLILGTIYALTSLLFWLQGKIMLTLSQDVVF 110 (598)
T ss_dssp GTGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTTCGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345567778888899999999999999999999998754322211 11111 22222223445677888899
Q ss_pred HHHHHHHHHHhcCCccccCCCCHHHHHHHHHHHHHH---------------------HHHHHHHHHHHHHHHHHHHHHHH
Q 037346 145 TLFAMIYNKGLTLSGQAKQGNTSGEIINLIAVDAER---------------------ALLILYKKLGLASIATLLATAIV 203 (1156)
Q Consensus 145 ~l~~~i~~k~l~l~~~~~~~~~~g~i~nl~s~D~~~---------------------~~~ll~~~lg~~~l~~~~~~~~~ 203 (1156)
.++..+|+|+++++...+++.++|+++|++++|++. +++++++.-++.+++.+++++++
T Consensus 111 ~lr~~l~~~ll~~~~~~~~~~~~G~l~~r~~~D~~~i~~~~~~~~~~~~~~~~~~i~~~~~l~~~~~~l~l~~l~~~~l~ 190 (598)
T 3qf4_B 111 RLRKELFEKLQRVPVGFFDRTPHGDIISRVINDVDNINNVLGNSIIQFFSGIVTLAGAVIMMFRVNVILSLVTLSIVPLT 190 (598)
T ss_dssp HHHHHHHHHHHHSCTHHHHHSCHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHTTHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999987 01111111122223333334444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH---------HHHHHHHHHHHHHHHHHHHHHH-
Q 037346 204 MLANFPLGRLREKFQDKFMETKDRRIKATSEILRNMRILKLQGWELKK---------NETAWLKKSVYTEAMISFFCWG- 273 (1156)
Q Consensus 204 ~~~~~~~~~~~~~~~~~~~~~~d~r~~~~~e~l~~i~~IK~~~~e~r~---------~e~~~~~~~~~~~~~~~~~~~~- 273 (1156)
+++...+.+...+..++..+..+++.+.+.|.++|+++||+|++|.+. ...+...+.....+....+...
T Consensus 191 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 270 (598)
T 3qf4_B 191 VLITQIVSSQTRKYFYENQRVLGQLNGIIEEDISGLTVIKLFTREEKEMEKFDRVNESLRKVGTKAQIFSGVLPPLMNMV 270 (598)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHTTTHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455566677777888888888899999999999999999999999211 1111111111111111111111
Q ss_pred -HHHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCccccccCCCC
Q 037346 274 -APTFVSVVTFGSCILLGIPLESGMILSALTTFKILQEPIYYLPESISMMIQAKVPLDRIASFLCLEGLQTDVLEKMPRG 352 (1156)
Q Consensus 274 -~~~~~~~~~f~~~~~~~~~lt~~~~ft~l~~~~~l~~pl~~l~~~~~~~~~a~~s~~Ri~~fl~~~~~~~~~~~~~~~~ 352 (1156)
....+.+++++++.+..+.+++|.+++++.+...+..|+..++..+..+.++.+|++||.++++.++..+.. ...+..
T Consensus 271 ~~~~~~~~~~~g~~l~~~g~ls~g~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~s~~ri~~~l~~~~~~~~~-~~~~~~ 349 (598)
T 3qf4_B 271 NNLGFALISGFGGWLALKDIITVGTIATFIGYSRQFTRPLNELSNQFNMIQMALASAERIFEILDLEEEKDDP-DAVELR 349 (598)
T ss_dssp HHHHHHHHHHHHHHHGGGTSSCHHHHHHHHTTTTSSHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCCCCCCS-SCCCCC
T ss_pred HHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCC-CCCCCC
Confidence 122344567888888888999999999999999999999999999999999999999999999876543211 111112
Q ss_pred CCCccEEEeeeEEEeCCCCCCCccccceEEeeCCeEEEEEcCCCCChHHHHHHHhCCCCCCCcEEEEcC-----------
Q 037346 353 NSDTAIEIIDGSFSWDFSSPNPTLRNINLKVFHGMRVAVCGTVGSGKSSCLSCILGGVPKESGIIRLCG----------- 421 (1156)
Q Consensus 353 ~~~~~i~~~~~~f~~~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKSTll~~i~g~~~~~~G~i~~~g----------- 421 (1156)
...+.|+++|++|+|+. ++++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|
T Consensus 350 ~~~~~i~~~~v~~~y~~--~~~~l~~isl~i~~G~~~~ivG~sGsGKSTll~~l~g~~~p~~G~i~~~g~~i~~~~~~~~ 427 (598)
T 3qf4_B 350 EVRGEIEFKNVWFSYDK--KKPVLKDITFHIKPGQKVALVGPTGSGKTTIVNLLMRFYDVDRGQILVDGIDIRKIKRSSL 427 (598)
T ss_dssp SCCCCEEEEEEECCSSS--SSCSCCSEEEECCTTCEEEEECCTTSSTTHHHHHHTTSSCCSEEEEEETTEEGGGSCHHHH
T ss_pred CCCCeEEEEEEEEECCC--CCccccceEEEEcCCCEEEEECCCCCcHHHHHHHHhcCcCCCCeEEEECCEEhhhCCHHHH
Confidence 23457999999999963 45799999999999999999999999999999999999999999999999
Q ss_pred --eEEEEecCCcCCCccHHHHhhcCCC-CCHHHHHHHHHHhCCchhhhhCCCCCccccccCCCCCCHHHHHHHHHHHhhc
Q 037346 422 --TKAYVAQSPWIQSGKIEENILFGKE-MDRERYERVLEACSLKKDLEVLPFGDQTIIGERGINLSGGQKQRIQIARPLY 498 (1156)
Q Consensus 422 --~~~~v~Q~~~~~~~ti~eni~~~~~-~~~~~~~~~~~~~~l~~~~~~~~~g~~t~v~~~g~~LSgGqkqRi~lAral~ 498 (1156)
+++||||+|++|++||+|||.+|.+ .+++++.++++.++++++++.+|+|++|.+|++|.+|||||||||+||||++
T Consensus 428 r~~i~~v~Q~~~lf~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~~~g~~LSgGq~Qrv~iAral~ 507 (598)
T 3qf4_B 428 RSSIGIVLQDTILFSTTVKENLKYGNPGATDEEIKEAAKLTHSDHFIKHLPEGYETVLTDNGEDLSQGQRQLLAITRAFL 507 (598)
T ss_dssp HHHEEEECTTCCCCSSBHHHHHHSSSTTCCTTHHHHHTTTTTCHHHHHTSTTGGGCBCHHHHTTSCHHHHHHHHHHHHHH
T ss_pred HhceEEEeCCCccccccHHHHHhcCCCCCCHHHHHHHHHHhCCHHHHHhccccccchhcCCCCCCCHHHHHHHHHHHHHh
Confidence 4899999999999999999999865 5667888999999999999999999999999999999999999999999999
Q ss_pred cCCCeeeeeCCCCCcCHHHHHHHHHHHHh-cCCCEEEEEccCCCccccCCEEEEEeCCeEEEccChHHHHhcCcchHHHH
Q 037346 499 QDADIFLLDDPFSPVDDHTGAHLFKFCWV-SSSKTVIYATHQVEFLPAADLILVIKDGKITQAGKYSDILNSGTDFMELV 577 (1156)
Q Consensus 499 ~~~~illlDep~s~lD~~~~~~i~~~~~~-~~~~tvi~vtH~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~~~~~~~~~ 577 (1156)
++|+++|||||||+||+++++.+.+.+.. .+|+|+|+||||++.+..||+|++|++|++++.|+++|+++.++.|.+++
T Consensus 508 ~~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~t~i~itH~l~~~~~~d~i~~l~~G~i~~~g~~~~l~~~~~~~~~~~ 587 (598)
T 3qf4_B 508 ANPKILILDEATSNVDTKTEKSIQAAMWKLMEGKTSIIIAHRLNTIKNADLIIVLRDGEIVEMGKHDELIQKRGFYYELF 587 (598)
T ss_dssp TCCSEEEECCCCTTCCHHHHHHHHHHHHHHHTTSEEEEESCCTTHHHHCSEEEEECSSSEEECSCHHHHHHTTCHHHHHH
T ss_pred cCCCEEEEECCccCCCHHHHHHHHHHHHHHcCCCEEEEEecCHHHHHcCCEEEEEECCEEEEECCHHHHHhCCCHHHHHH
Confidence 99999999999999999999999876644 46899999999999998899999999999999999999998888888887
Q ss_pred Hhhh
Q 037346 578 GAHK 581 (1156)
Q Consensus 578 ~~~~ 581 (1156)
..+.
T Consensus 588 ~~~~ 591 (598)
T 3qf4_B 588 TSQY 591 (598)
T ss_dssp HHHH
T ss_pred HHHh
Confidence 6543
|
| >3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae} | Back alignment and structure |
|---|
Probab=100.00 E-value=7e-66 Score=634.75 Aligned_cols=502 Identities=20% Similarity=0.260 Sum_probs=396.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccc---chhh--HH-----HHHHHHHHHHHHHHHHHH
Q 037346 73 KVLFFSAWQEILFIAILALLYTLATYVGPYLIDNFVQYLNGRQAFE---YEGY--VL-----CLSERHWFFQVQQFGIRF 142 (1156)
Q Consensus 73 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~p~ll~~~i~~~~~~~~~~---~~g~--~l-----~~~~~~~~~~~~~~~~~~ 142 (1156)
..+++.+++.++..+++.++..++..+.|++++.+++.+....... +.++ ++ .++.....+...+.+.++
T Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (582)
T 3b5x_A 17 WTYIRLYKAGLVVSTIALVINAAADTYMISLLKPLLDEGFGNAESNFLRILPFMILGLMFVRGLSGFASSYCLSWVSGNV 96 (582)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456667778888888899999999999999999999875322111 1111 11 222223334567788999
Q ss_pred HHHHHHHHHHHHhcCCccccCCCCHHHHHHHHHHHHHH---------------------HHHHHHHHHHHHHHHHHHHHH
Q 037346 143 RATLFAMIYNKGLTLSGQAKQGNTSGEIINLIAVDAER---------------------ALLILYKKLGLASIATLLATA 201 (1156)
Q Consensus 143 r~~l~~~i~~k~l~l~~~~~~~~~~g~i~nl~s~D~~~---------------------~~~ll~~~lg~~~l~~~~~~~ 201 (1156)
...++..+|+|.++++...+++.++|++++++++|++. +++++++.-.+.+++.+++++
T Consensus 97 ~~~lr~~l~~~ll~~~~~~~~~~~~g~l~~rl~~d~~~i~~~~~~~~~~~~~~~~~~i~~~~~l~~~~~~l~li~l~~~~ 176 (582)
T 3b5x_A 97 VMQMRRRLFNHFMHMPVRFFDQESTGGLLSRITYDSEQVAGATSRALVSIVREGASIIGLLTLMFWNSWQLSLVLIVVAP 176 (582)
T ss_pred HHHHHHHHHHHHHcCCHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999987 011111111112222233333
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH-------------HHHHHHHHHHHHHHHHH
Q 037346 202 IVMLANFPLGRLREKFQDKFMETKDRRIKATSEILRNMRILKLQGWELKK-------------NETAWLKKSVYTEAMIS 268 (1156)
Q Consensus 202 ~~~~~~~~~~~~~~~~~~~~~~~~d~r~~~~~e~l~~i~~IK~~~~e~r~-------------~e~~~~~~~~~~~~~~~ 268 (1156)
+++++...+.+...+..++..+..++..+.+.|.++|+++||.|++|.+. .+.+..+..........
T Consensus 177 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 256 (582)
T 3b5x_A 177 VVAFAISFVSKRFRKISRNMQTAMGHVTSSAEQMLKGHKVVLSYGGQEVERKRFDKVSNSMRQQTMKLVSAQSIADPVIQ 256 (582)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444555667777788888888889999999999999999999999111 11111111111111111
Q ss_pred HHHHHHHHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCcccccc
Q 037346 269 FFCWGAPTFVSVVTFGSCILLGIPLESGMILSALTTFKILQEPIYYLPESISMMIQAKVPLDRIASFLCLEGLQTDVLEK 348 (1156)
Q Consensus 269 ~~~~~~~~~~~~~~f~~~~~~~~~lt~~~~ft~l~~~~~l~~pl~~l~~~~~~~~~a~~s~~Ri~~fl~~~~~~~~~~~~ 348 (1156)
++.. ...+.+++++++.+..+.+++|.+++++.++..+..|+..++..+..+.++.++++|+.++++.++..+.. .
T Consensus 257 ~~~~--~~~~~i~~~g~~~v~~g~lt~g~l~~~~~~~~~~~~pl~~l~~~~~~~~~~~~a~~ri~~~l~~~~~~~~~--~ 332 (582)
T 3b5x_A 257 MIAS--LALFAVLFLASVDSIRAELTPGTFTVVFSAMFGLMRPLKALTSVTSEFQRGMAACQTLFGLMDLETERDNG--K 332 (582)
T ss_pred HHHH--HHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCCCC--C
Confidence 1111 12233566788888889999999999999999999999999999999999999999999999876432211 1
Q ss_pred CCCCCCCccEEEeeeEEEeCCCCCCCccccceEEeeCCeEEEEEcCCCCChHHHHHHHhCCCCCCCcEEEEcC-------
Q 037346 349 MPRGNSDTAIEIIDGSFSWDFSSPNPTLRNINLKVFHGMRVAVCGTVGSGKSSCLSCILGGVPKESGIIRLCG------- 421 (1156)
Q Consensus 349 ~~~~~~~~~i~~~~~~f~~~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKSTll~~i~g~~~~~~G~i~~~g------- 421 (1156)
.+.....+.|+++|++|+|+.+ ++++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|
T Consensus 333 ~~~~~~~~~i~~~~v~~~y~~~-~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTll~~l~g~~~p~~G~i~~~g~~~~~~~ 411 (582)
T 3b5x_A 333 YEAERVNGEVDVKDVTFTYQGK-EKPALSHVSFSIPQGKTVALVGRSGSGKSTIANLFTRFYDVDSGSICLDGHDVRDYK 411 (582)
T ss_pred CCCCCCCCeEEEEEEEEEcCCC-CccccccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCCEEEECCEEhhhCC
Confidence 1111223569999999999732 25799999999999999999999999999999999999999999999998
Q ss_pred ------eEEEEecCCcCCCccHHHHhhcCC--CCCHHHHHHHHHHhCCchhhhhCCCCCccccccCCCCCCHHHHHHHHH
Q 037346 422 ------TKAYVAQSPWIQSGKIEENILFGK--EMDRERYERVLEACSLKKDLEVLPFGDQTIIGERGINLSGGQKQRIQI 493 (1156)
Q Consensus 422 ------~~~~v~Q~~~~~~~ti~eni~~~~--~~~~~~~~~~~~~~~l~~~~~~~~~g~~t~v~~~g~~LSgGqkqRi~l 493 (1156)
+++||||+|++|++||+|||.++. ..++++++++++.++++++++.+|+|++|.+|++|.+||||||||++|
T Consensus 412 ~~~~~~~i~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~~~~~p~g~~t~~~~~~~~LSgGq~qr~~i 491 (582)
T 3b5x_A 412 LTNLRRHFALVSQNVHLFNDTIANNIAYAAEGEYTREQIEQAARQAHAMEFIENMPQGLDTVIGENGTSLSGGQRQRVAI 491 (582)
T ss_pred HHHHhcCeEEEcCCCccccccHHHHHhccCCCCCCHHHHHHHHHHCCCHHHHHhCcccccchhcCCCCcCCHHHHHHHHH
Confidence 379999999999999999999986 467888999999999999999999999999999999999999999999
Q ss_pred HHhhccCCCeeeeeCCCCCcCHHHHHHHHHHHHh-cCCCEEEEEccCCCccccCCEEEEEeCCeEEEccChHHHHhcCcc
Q 037346 494 ARPLYQDADIFLLDDPFSPVDDHTGAHLFKFCWV-SSSKTVIYATHQVEFLPAADLILVIKDGKITQAGKYSDILNSGTD 572 (1156)
Q Consensus 494 Aral~~~~~illlDep~s~lD~~~~~~i~~~~~~-~~~~tvi~vtH~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~~~~ 572 (1156)
|||++++|+++|||||||+||+++++.+.+.+.. .+|+|+|+||||++.+..||+|++|++|++++.|+++++++.++.
T Consensus 492 Aral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~~~~ 571 (582)
T 3b5x_A 492 ARALLRDAPVLILDEATSALDTESERAIQAALDELQKNKTVLVIAHRLSTIEQADEILVVDEGEIIERGRHADLLAQDGA 571 (582)
T ss_pred HHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHcCCCEEEEEecCHHHHHhCCEEEEEECCEEEEECCHHHHHhCCcH
Confidence 9999999999999999999999999998876654 458999999999999888999999999999999999999987777
Q ss_pred hHHHHHh
Q 037346 573 FMELVGA 579 (1156)
Q Consensus 573 ~~~~~~~ 579 (1156)
|.+++..
T Consensus 572 ~~~~~~~ 578 (582)
T 3b5x_A 572 YAQLHRI 578 (582)
T ss_pred HHHHHHH
Confidence 8777654
|
| >3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A | Back alignment and structure |
|---|
Probab=100.00 E-value=5.4e-66 Score=635.73 Aligned_cols=501 Identities=20% Similarity=0.250 Sum_probs=395.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccc---chhh--HH-----HHHHHHHHHHHHHHHHHHH
Q 037346 74 VLFFSAWQEILFIAILALLYTLATYVGPYLIDNFVQYLNGRQAFE---YEGY--VL-----CLSERHWFFQVQQFGIRFR 143 (1156)
Q Consensus 74 ~l~~~~~~~~~~~~~~~~~~~~~~~~~p~ll~~~i~~~~~~~~~~---~~g~--~l-----~~~~~~~~~~~~~~~~~~r 143 (1156)
.+.+.+++.++..+++.++..++.++.|++++.+++.+....... +..+ ++ .++.....+...+.+.++.
T Consensus 18 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (582)
T 3b60_A 18 PTIAPFKAGLIVAGIALILNAASDTFMLSLLKPLLDDGFGKTDRSVLLWMPLVVIGLMILRGITSYISSYCISWVSGKVV 97 (582)
T ss_dssp HHHGGGHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHSSTTSTTHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345566777888888899999999999999999999765322111 1111 11 2222223345677889999
Q ss_pred HHHHHHHHHHHhcCCccccCCCCHHHHHHHHHHHHHH---------------------HHHHHHHHHHHHHHHHHHHHHH
Q 037346 144 ATLFAMIYNKGLTLSGQAKQGNTSGEIINLIAVDAER---------------------ALLILYKKLGLASIATLLATAI 202 (1156)
Q Consensus 144 ~~l~~~i~~k~l~l~~~~~~~~~~g~i~nl~s~D~~~---------------------~~~ll~~~lg~~~l~~~~~~~~ 202 (1156)
..++..+|+|.++++...+++.++|++++++++|++. +++++++.-++.+++.++++++
T Consensus 98 ~~lr~~l~~~l~~~~~~~~~~~~~g~l~~r~~~d~~~i~~~~~~~~~~~~~~~~~~i~~~~~l~~~~~~l~li~l~~~~l 177 (582)
T 3b60_A 98 MTMRRRLFGHMMGMPVAFFDKQSTGTLLSRITYDSEQVASSSSGALITVVREGASIIGLFIMMFYYSWQLSIILVVLAPI 177 (582)
T ss_dssp HHHHHHHHHHHHTCCSTHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999987 0011111111112222233333
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH-------------HHHHHHHHHHHHHHHHHH
Q 037346 203 VMLANFPLGRLREKFQDKFMETKDRRIKATSEILRNMRILKLQGWELKK-------------NETAWLKKSVYTEAMISF 269 (1156)
Q Consensus 203 ~~~~~~~~~~~~~~~~~~~~~~~d~r~~~~~e~l~~i~~IK~~~~e~r~-------------~e~~~~~~~~~~~~~~~~ 269 (1156)
++++...+.+...+..++..+..+++.+.+.|.++|+++||.|++|.+. .+.+..+..........+
T Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 257 (582)
T 3b60_A 178 VSIAIRVVSKRFRSISKNMQNTMGQVTTSAEQMLKGHKEVLIFGGQEVETKRFDKVSNKMRLQGMKMVSASSISDPIIQL 257 (582)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444455667777888888888899999999999999999999999111 111111111111111111
Q ss_pred HHHHHHHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCccccccC
Q 037346 270 FCWGAPTFVSVVTFGSCILLGIPLESGMILSALTTFKILQEPIYYLPESISMMIQAKVPLDRIASFLCLEGLQTDVLEKM 349 (1156)
Q Consensus 270 ~~~~~~~~~~~~~f~~~~~~~~~lt~~~~ft~l~~~~~l~~pl~~l~~~~~~~~~a~~s~~Ri~~fl~~~~~~~~~~~~~ 349 (1156)
+.. ...+.+++++++.+..+.+++|.+++++.++..+..|+..++..+..+.++.++++|+.++++.++..+.. ..
T Consensus 258 ~~~--~~~~~~~~~g~~~v~~g~lt~g~l~~~~~~~~~~~~pl~~l~~~~~~~~~~~~a~~ri~~~l~~~~~~~~~--~~ 333 (582)
T 3b60_A 258 IAS--LALAFVLYAASFPSVMDSLTAGTITVVFSSMIALMRPLKSLTNVNAQFQRGMAACQTLFAILDSEQEKDEG--KR 333 (582)
T ss_dssp HHH--HHHHHHHHHHHSSSTTSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCSCCCC--CB
T ss_pred HHH--HHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCccCC--CC
Confidence 111 12233556777777788999999999999999999999999999999999999999999999876432211 11
Q ss_pred CCCCCCccEEEeeeEEEeCCCCCCCccccceEEeeCCeEEEEEcCCCCChHHHHHHHhCCCCCCCcEEEEcC--------
Q 037346 350 PRGNSDTAIEIIDGSFSWDFSSPNPTLRNINLKVFHGMRVAVCGTVGSGKSSCLSCILGGVPKESGIIRLCG-------- 421 (1156)
Q Consensus 350 ~~~~~~~~i~~~~~~f~~~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKSTll~~i~g~~~~~~G~i~~~g-------- 421 (1156)
+.....+.|+++|++|+|+.+ ++++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|
T Consensus 334 ~~~~~~~~i~~~~v~~~y~~~-~~~~l~~v~~~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~p~~G~i~~~g~~~~~~~~ 412 (582)
T 3b60_A 334 VIDRATGDLEFRNVTFTYPGR-EVPALRNINLKIPAGKTVALVGRSGSGKSTIASLITRFYDIDEGHILMDGHDLREYTL 412 (582)
T ss_dssp CCSCCCCCEEEEEEEECSSSS-SCCSEEEEEEEECTTCEEEEEECTTSSHHHHHHHHTTTTCCSEEEEEETTEETTTBCH
T ss_pred CCCCCCCcEEEEEEEEEcCCC-CCccccceeEEEcCCCEEEEECCCCCCHHHHHHHHhhccCCCCCeEEECCEEccccCH
Confidence 111223569999999999632 25799999999999999999999999999999999999999999999998
Q ss_pred -----eEEEEecCCcCCCccHHHHhhcCC--CCCHHHHHHHHHHhCCchhhhhCCCCCccccccCCCCCCHHHHHHHHHH
Q 037346 422 -----TKAYVAQSPWIQSGKIEENILFGK--EMDRERYERVLEACSLKKDLEVLPFGDQTIIGERGINLSGGQKQRIQIA 494 (1156)
Q Consensus 422 -----~~~~v~Q~~~~~~~ti~eni~~~~--~~~~~~~~~~~~~~~l~~~~~~~~~g~~t~v~~~g~~LSgGqkqRi~lA 494 (1156)
+++||||+|++|++||+|||.++. ..++++++++++.++++++++.+|+|++|.+|++|.+||||||||++||
T Consensus 413 ~~~~~~i~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~l~~~~l~~~~~~~p~g~~~~~~~~~~~LSgGq~qrl~iA 492 (582)
T 3b60_A 413 ASLRNQVALVSQNVHLFNDTVANNIAYARTEEYSREQIEEAARMAYAMDFINKMDNGLDTIIGENGVLLSGGQRQRIAIA 492 (582)
T ss_dssp HHHHHTEEEECSSCCCCSSBHHHHHHTTTTSCCCHHHHHHHHHTTTCHHHHHHSTTGGGSBCCTTSCSSCHHHHHHHHHH
T ss_pred HHHHhhCeEEccCCcCCCCCHHHHHhccCCCCCCHHHHHHHHHHcCCHHHHHhccccccccccCCCCCCCHHHHHHHHHH
Confidence 379999999999999999999986 4678889999999999999999999999999999999999999999999
Q ss_pred HhhccCCCeeeeeCCCCCcCHHHHHHHHHHHHh-cCCCEEEEEccCCCccccCCEEEEEeCCeEEEccChHHHHhcCcch
Q 037346 495 RPLYQDADIFLLDDPFSPVDDHTGAHLFKFCWV-SSSKTVIYATHQVEFLPAADLILVIKDGKITQAGKYSDILNSGTDF 573 (1156)
Q Consensus 495 ral~~~~~illlDep~s~lD~~~~~~i~~~~~~-~~~~tvi~vtH~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~~~~~ 573 (1156)
||++++|+++|||||||+||+++++.+.+.+.. .+|+|+|+||||++.+..||+|++|++|++++.|+++++++.++.|
T Consensus 493 ral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~~~~~ 572 (582)
T 3b60_A 493 RALLRDSPILILDEATSALDTESERAIQAALDELQKNRTSLVIAHRLSTIEQADEIVVVEDGIIVERGTHSELLAQHGVY 572 (582)
T ss_dssp HHHHHCCSEEEEETTTSSCCHHHHHHHHHHHHHHHTTSEEEEECSCGGGTTTCSEEEEEETTEEEEEECHHHHHHHTSSH
T ss_pred HHHHhCCCEEEEECccccCCHHHHHHHHHHHHHHhCCCEEEEEeccHHHHHhCCEEEEEECCEEEEecCHHHHHHcCCHH
Confidence 999999999999999999999999998876644 4689999999999999899999999999999999999999887788
Q ss_pred HHHHHh
Q 037346 574 MELVGA 579 (1156)
Q Consensus 574 ~~~~~~ 579 (1156)
.+++..
T Consensus 573 ~~~~~~ 578 (582)
T 3b60_A 573 AQLHKM 578 (582)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 887654
|
| >4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-65 Score=681.60 Aligned_cols=433 Identities=20% Similarity=0.267 Sum_probs=366.9
Q ss_pred HHHHHHHHHHHHHHHHhccccccccccccccchhhhhcccccccchhhhcccchHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 037346 712 AGYKTATQLFNKMHVCIFRAPMYFFDSTPSGRILNRVSENVKWADQSAADMDIPYDIGAFAFSMIQLLGIIVVMSLVAWQ 791 (1156)
Q Consensus 712 ~~~~~~~~l~~~l~~~ll~~p~~ff~~~~~G~il~R~s~d~~~~d~~~~d~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 791 (1156)
.+.+...++|.++|++++++|++|||++++|++++|++ .|+..++..+...+..++..++.++++++++++.+|+
T Consensus 163 ~~~r~~~~lR~~~~~~ll~~~~~~fd~~~~G~l~sr~~-----~D~~~i~~~~~~~l~~~~~~~~~~i~~~i~~~~~~~~ 237 (1321)
T 4f4c_A 163 VAEQMNNRLRREFVKSILRQEISWFDTNHSGTLATKLF-----DNLERVKEGTGDKIGMAFQYLSQFITGFIVAFTHSWQ 237 (1321)
T ss_dssp HHHHHHHHHHHHHHHHHTTSCHHHHHHTCCTTHHHHHH-----HHHHHHHHTSSHHHHHHHHHHHHHHHHHHHHHHHCHH
T ss_pred HHHHHHHHHHHHHHHHHHCCCHHHHCCCChHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 67899999999999999999999999999999999999 8888888888888899999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhChHHHHHHhhccchhhhhhcchHHHHHHHHHHHHHHHhhHHHHHHH
Q 037346 792 VLIVFVPVIATFIWYQQYYITSTRELSRLIGVCKAPVIQQFSETISGSTTIRSLDQELRFRDTNMKLIDEYSRPKFHIAG 871 (1156)
Q Consensus 792 l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~e~l~Gi~tIra~~~e~~~~~~~~~~~~~~~~~~~~~~~ 871 (1156)
++++++.+++++.++..++.+..+...+......+...+.+.|+++|+++||+|++|+.+.++|.+..++..+.......
T Consensus 238 l~lv~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~ 317 (1321)
T 4f4c_A 238 LTLVMLAVTPIQALCGFAIAKSMSTFAIRETLRYAKAGKVVEETISSIRTVVSLNGLRYELERYSTAVEEAKKAGVLKGL 317 (1321)
T ss_dssp HHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHH
Confidence 98887777777777777777777777777778888899999999999999999999999999999998888777766555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-HHcCCCccch-----------------------HHHHHHHhHHHHHHHHhhcCCC
Q 037346 872 AMEWLRFCIDMLSSITFAFSLAFL-ISVPNGIIHP-----------------------YKNLERKIISVERILQCACIPS 927 (1156)
Q Consensus 872 ~~~~~~~~l~~~~~~~~~~~~~~~-~~~~~~~~~~-----------------------~~~~~~~~~s~~Ri~~~~~~~~ 927 (1156)
...+......++..+.+++++.+. .....+.++. ...+....++++|+.++++.++
T Consensus 318 ~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~g~lt~g~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~s~~ri~~~l~~~~ 397 (1321)
T 4f4c_A 318 FLGISFGAMQASNFISFALAFYIGVGWVHDGSLNFGDMLTTFSSVMMGSMALGLAGPQLAVLGTAQGAASGIYEVLDRKP 397 (1321)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTSC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCc
Confidence 555444444433333222222111 1111111111 2566778899999999998766
Q ss_pred CCcccccCCCCCCCCCCCCeEEEEEEEEEEcC--CCC--------------ceeeCCCCCCHHHHHHHHhhcccCCCceE
Q 037346 928 EPALVIEATKPNNSRPSHGEVNIRHLQVRYAP--NLP--------------LVLRGRTGSGKSTLIQTLFRIVESTAGHI 991 (1156)
Q Consensus 928 e~~~~~~~~~~~~~~p~~g~I~~~~Vsf~Y~~--~~~--------------~vL~G~SGsGKSTL~~lL~rl~~p~~G~I 991 (1156)
+.+.. ........+..|.|+|+||+|+|+. +.+ ++|+||||||||||+++|+|+|+|++|+|
T Consensus 398 ~~~~~--~~~~~~~~~~~g~I~~~nvsF~Y~~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTll~ll~~~~~~~~G~I 475 (1321)
T 4f4c_A 398 VIDSS--SKAGRKDMKIKGDITVENVHFTYPSRPDVPILRGMNLRVNAGQTVALVGSSGCGKSTIISLLLRYYDVLKGKI 475 (1321)
T ss_dssp CSSCS--SSCCCCCCCCCCCEEEEEEEECCSSSTTSCSEEEEEEEECTTCEEEEEECSSSCHHHHHHHHTTSSCCSEEEE
T ss_pred ccccc--ccccccCCCCCCcEEEEEeeeeCCCCCCCceeeceEEeecCCcEEEEEecCCCcHHHHHHHhccccccccCcc
Confidence 54321 1112223455789999999999953 222 35669999999999999999999999999
Q ss_pred EEcCeeCCCCChHHHhhcCeeeccccccccccchhccCCCCC-CCHHHHHHHHHHcCCChHHHhhcCCcccc--------
Q 037346 992 LIDGKDISLIGLHDLRTRLSIIPQDPTMFEGTTRSNLDPLEE-HADEQIWEALDKCQLGDEVRKKKGKLDSQ-------- 1062 (1156)
Q Consensus 992 ~idG~di~~i~~~~LR~~i~~VpQdp~LF~gTIr~Nl~~~~~-~~deei~~al~~~~l~~~i~~lp~gl~s~-------- 1062 (1156)
.+||+|++++++++||++|+||||||+||+|||||||.++++ .+++++++||+.|+++++|+.+|+|+||.
T Consensus 476 ~idG~~i~~~~~~~lr~~i~~v~Q~~~Lf~~TI~eNI~~g~~~~~~~~v~~a~~~a~l~~~i~~lp~G~~T~vGe~G~~L 555 (1321)
T 4f4c_A 476 TIDGVDVRDINLEFLRKNVAVVSQEPALFNCTIEENISLGKEGITREEMVAACKMANAEKFIKTLPNGYNTLVGDRGTQL 555 (1321)
T ss_dssp EETTEETTTSCHHHHHHHEEEECSSCCCCSEEHHHHHHTTCTTCCHHHHHHHHHHTTCHHHHHHSTTTTSSEESSSSCCC
T ss_pred cCCCccchhccHHHHhhcccccCCcceeeCCchhHHHhhhcccchHHHHHHHHHHccchhHHHcCCCCCccEecCCCCCC
Confidence 999999999999999999999999999999999999998865 67999999999999999999999999976
Q ss_pred ----------ccccccCCCEEEEecCCcCCCHHHHHHHHHHHHHhcCCceEEEeecCcccccccCEEEEEeCcEEeeecC
Q 037346 1063 ----------GRVLLKKSKVLVLDEATASVDTATDNQIQQTLRQHFSDCTVVTIAHRITSVLDSAMVLLLNHGLIKEYDS 1132 (1156)
Q Consensus 1063 ----------ARALLr~~~ILiLDEaTS~LD~~te~~I~~~l~~~~~~~TvI~IaHrl~ti~~~D~I~Vl~~G~IvE~G~ 1132 (1156)
|||++++|+|||||||||+||++||+.|+++|++..+++|+|+||||++++++||+|+||++|+|+|+|+
T Consensus 556 SGGQkQRiaiARAl~~~~~IliLDE~tSaLD~~te~~i~~~l~~~~~~~T~iiiaHrls~i~~aD~Iivl~~G~ive~Gt 635 (1321)
T 4f4c_A 556 SGGQKQRIAIARALVRNPKILLLDEATSALDAESEGIVQQALDKAAKGRTTIIIAHRLSTIRNADLIISCKNGQVVEVGD 635 (1321)
T ss_dssp CHHHHHHHHHHHHHTTCCSEEEEESTTTTSCTTTHHHHHHHHHHHHTTSEEEEECSCTTTTTTCSEEEEEETTEEEEEEC
T ss_pred CHHHHHHHHHHHHHccCCCEEEEecccccCCHHHHHHHHHHHHHHhCCCEEEEEcccHHHHHhCCEEEEeeCCeeeccCC
Confidence 8999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhHHhcCCCChHHHHHHHHh
Q 037346 1133 PTKLLENKSSSFAQLVAEYT 1152 (1156)
Q Consensus 1133 ~~eLl~~~~g~f~~l~~~~~ 1152 (1156)
|+||+++ +|.|++|++.++
T Consensus 636 h~eL~~~-~g~y~~l~~~q~ 654 (1321)
T 4f4c_A 636 HRALMAQ-QGLYYDLVTAQT 654 (1321)
T ss_dssp HHHHHTT-TCHHHHHHHHHH
T ss_pred HHHHHHh-hhHHHHHHHhhh
Confidence 9999985 899999998654
|
| >3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.7e-63 Score=611.30 Aligned_cols=431 Identities=24% Similarity=0.339 Sum_probs=366.6
Q ss_pred HHHHHHHHHHHHHHHHhccccccccccccccchhhhhcccccccchhhhcccchHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 037346 712 AGYKTATQLFNKMHVCIFRAPMYFFDSTPSGRILNRVSENVKWADQSAADMDIPYDIGAFAFSMIQLLGIIVVMSLVAWQ 791 (1156)
Q Consensus 712 ~~~~~~~~l~~~l~~~ll~~p~~ff~~~~~G~il~R~s~d~~~~d~~~~d~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 791 (1156)
.+.++..++|.+++++++++|+.||+++++|++++|++ .|+..++..++..+..++..++.+++.+++++..+|+
T Consensus 104 ~~~~~~~~lr~~l~~~ll~~~~~~~~~~~~G~l~~r~~-----~D~~~i~~~~~~~~~~~~~~~~~~i~~~~~l~~~~~~ 178 (598)
T 3qf4_B 104 LSQDVVFRLRKELFEKLQRVPVGFFDRTPHGDIISRVI-----NDVDNINNVLGNSIIQFFSGIVTLAGAVIMMFRVNVI 178 (598)
T ss_dssp HHHHHHHHHHHHHHHHHHHSCTHHHHHSCHHHHHHHHH-----HHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHCHH
T ss_pred HHHHHHHHHHHHHHHHHHCCCHHHHcCCCHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45688889999999999999999999999999999999 8888888888888888888899999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhChHHHHHHhhccchhhhhhcchHHHHHHHHHHHHHHHhhHHHHHHH
Q 037346 792 VLIVFVPVIATFIWYQQYYITSTRELSRLIGVCKAPVIQQFSETISGSTTIRSLDQELRFRDTNMKLIDEYSRPKFHIAG 871 (1156)
Q Consensus 792 l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~e~l~Gi~tIra~~~e~~~~~~~~~~~~~~~~~~~~~~~ 871 (1156)
++++++.++++++++..++.+..++..+...+..+++.+.+.|+++|+++||+|++|+.+.+++.+..++..+.......
T Consensus 179 l~l~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~ 258 (598)
T 3qf4_B 179 LSLVTLSIVPLTVLITQIVSSQTRKYFYENQRVLGQLNGIIEEDISGLTVIKLFTREEKEMEKFDRVNESLRKVGTKAQI 258 (598)
T ss_dssp HHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHcCChHHHHHHHHHHHHHHHHHHHHHHH
Confidence 98888777777777777888888888888888889999999999999999999999999999999998888887777666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-HHcCCCcc----------------c-------hHHHHHHHhHHHHHHHHhhcCCC
Q 037346 872 AMEWLRFCIDMLSSITFAFSLAFL-ISVPNGII----------------H-------PYKNLERKIISVERILQCACIPS 927 (1156)
Q Consensus 872 ~~~~~~~~l~~~~~~~~~~~~~~~-~~~~~~~~----------------~-------~~~~~~~~~~s~~Ri~~~~~~~~ 927 (1156)
...+......++..+..++++.+. .....+.+ . ....+.....+++|+.++.+.++
T Consensus 259 ~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~g~ls~g~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~s~~ri~~~l~~~~ 338 (598)
T 3qf4_B 259 FSGVLPPLMNMVNNLGFALISGFGGWLALKDIITVGTIATFIGYSRQFTRPLNELSNQFNMIQMALASAERIFEILDLEE 338 (598)
T ss_dssp HTTTHHHHHHHHHHHHHHHHHHHHHHHGGGTSSCHHHHHHHHTTTTSSHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 666555555544433322221111 00111111 1 12567778899999999998776
Q ss_pred CCcccccCCCCCCCCCCCCeEEEEEEEEEEcCCC--------------CceeeCCCCCCHHHHHHHHhhcccCCCceEEE
Q 037346 928 EPALVIEATKPNNSRPSHGEVNIRHLQVRYAPNL--------------PLVLRGRTGSGKSTLIQTLFRIVESTAGHILI 993 (1156)
Q Consensus 928 e~~~~~~~~~~~~~~p~~g~I~~~~Vsf~Y~~~~--------------~~vL~G~SGsGKSTL~~lL~rl~~p~~G~I~i 993 (1156)
+... ......++..|.|+++||+|+|+++. .++|.||||||||||+++|+|+++|++|+|.+
T Consensus 339 ~~~~----~~~~~~~~~~~~i~~~~v~~~y~~~~~~l~~isl~i~~G~~~~ivG~sGsGKSTll~~l~g~~~p~~G~i~~ 414 (598)
T 3qf4_B 339 EKDD----PDAVELREVRGEIEFKNVWFSYDKKKPVLKDITFHIKPGQKVALVGPTGSGKTTIVNLLMRFYDVDRGQILV 414 (598)
T ss_dssp CCCC----SSCCCCCSCCCCEEEEEEECCSSSSSCSCCSEEEECCTTCEEEEECCTTSSTTHHHHHHTTSSCCSEEEEEE
T ss_pred CCCC----CCCCCCCCCCCeEEEEEEEEECCCCCccccceEEEEcCCCEEEEECCCCCcHHHHHHHHhcCcCCCCeEEEE
Confidence 6421 11223355678999999999996433 24567999999999999999999999999999
Q ss_pred cCeeCCCCChHHHhhcCeeeccccccccccchhccCCCCC-CCHHHHHHHHHHcCCChHHHhhcCCcccc----------
Q 037346 994 DGKDISLIGLHDLRTRLSIIPQDPTMFEGTTRSNLDPLEE-HADEQIWEALDKCQLGDEVRKKKGKLDSQ---------- 1062 (1156)
Q Consensus 994 dG~di~~i~~~~LR~~i~~VpQdp~LF~gTIr~Nl~~~~~-~~deei~~al~~~~l~~~i~~lp~gl~s~---------- 1062 (1156)
||+|+++++.+++|+++++|||||.+|++||+|||.++.+ .++++++++++.+++++++..+|+|+++.
T Consensus 415 ~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~~~g~~LSg 494 (598)
T 3qf4_B 415 DGIDIRKIKRSSLRSSIGIVLQDTILFSTTVKENLKYGNPGATDEEIKEAAKLTHSDHFIKHLPEGYETVLTDNGEDLSQ 494 (598)
T ss_dssp TTEEGGGSCHHHHHHHEEEECTTCCCCSSBHHHHHHSSSTTCCTTHHHHHTTTTTCHHHHHTSTTGGGCBCHHHHTTSCH
T ss_pred CCEEhhhCCHHHHHhceEEEeCCCccccccHHHHHhcCCCCCCHHHHHHHHHHhCCHHHHHhccccccchhcCCCCCCCH
Confidence 9999999999999999999999999999999999988754 66889999999999999999999999864
Q ss_pred --------ccccccCCCEEEEecCCcCCCHHHHHHHHHHHHHhcCCceEEEeecCcccccccCEEEEEeCcEEeeecChh
Q 037346 1063 --------GRVLLKKSKVLVLDEATASVDTATDNQIQQTLRQHFSDCTVVTIAHRITSVLDSAMVLLLNHGLIKEYDSPT 1134 (1156)
Q Consensus 1063 --------ARALLr~~~ILiLDEaTS~LD~~te~~I~~~l~~~~~~~TvI~IaHrl~ti~~~D~I~Vl~~G~IvE~G~~~ 1134 (1156)
||||+++|+|||||||||+||+++++.|++.|++..+++|+|+||||++++..||+|+||++|+|+|.|+|+
T Consensus 495 Gq~Qrv~iAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~t~i~itH~l~~~~~~d~i~~l~~G~i~~~g~~~ 574 (598)
T 3qf4_B 495 GQRQLLAITRAFLANPKILILDEATSNVDTKTEKSIQAAMWKLMEGKTSIIIAHRLNTIKNADLIIVLRDGEIVEMGKHD 574 (598)
T ss_dssp HHHHHHHHHHHHHTCCSEEEECCCCTTCCHHHHHHHHHHHHHHHTTSEEEEESCCTTHHHHCSEEEEECSSSEEECSCHH
T ss_pred HHHHHHHHHHHHhcCCCEEEEECCccCCCHHHHHHHHHHHHHHcCCCEEEEEecCHHHHHcCCEEEEEECCEEEEECCHH
Confidence 899999999999999999999999999999999988899999999999999999999999999999999999
Q ss_pred HHhcCCCChHHHHHHHHh
Q 037346 1135 KLLENKSSSFAQLVAEYT 1152 (1156)
Q Consensus 1135 eLl~~~~g~f~~l~~~~~ 1152 (1156)
||+++ +|.|++++..+.
T Consensus 575 ~l~~~-~~~~~~~~~~~~ 591 (598)
T 3qf4_B 575 ELIQK-RGFYYELFTSQY 591 (598)
T ss_dssp HHHHT-TCHHHHHHHHHH
T ss_pred HHHhC-CCHHHHHHHHHh
Confidence 99975 799999998754
|
| >3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.3e-63 Score=611.26 Aligned_cols=432 Identities=22% Similarity=0.302 Sum_probs=352.3
Q ss_pred HHHHHHHHHHHHHHHHhccccccccccccccchhhhhcccccccchhhhcccchHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 037346 712 AGYKTATQLFNKMHVCIFRAPMYFFDSTPSGRILNRVSENVKWADQSAADMDIPYDIGAFAFSMIQLLGIIVVMSLVAWQ 791 (1156)
Q Consensus 712 ~~~~~~~~l~~~l~~~ll~~p~~ff~~~~~G~il~R~s~d~~~~d~~~~d~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 791 (1156)
.+.+...++|.++++++++.|+.||+++++|++++|++ .|+..++..+...+..++..++.+++.+++++.++|+
T Consensus 90 ~~~~~~~~lr~~l~~~ll~~~~~~~~~~~~G~l~~r~~-----~D~~~i~~~~~~~~~~~~~~~~~~i~~~~~l~~~~~~ 164 (587)
T 3qf4_A 90 ASQNFGADLRRDLFRKVLSFSISNVNRFHTSSLITRLT-----NDVTQLQNLVMMLLRIVVRAPLLFVGGIVMAVSINVK 164 (587)
T ss_dssp HHHHHHHHHHHHHHHHHHHCCHHHHHHSCHHHHHHHHH-----HHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHHHHHHHHCCCHHHHccCCHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45688889999999999999999999999999999999 7777777777777777777778888888888899999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhChHHHHHHhhccchhhhhhcchHHHHHHHHHHHHHHHhhHHHHHHH
Q 037346 792 VLIVFVPVIATFIWYQQYYITSTRELSRLIGVCKAPVIQQFSETISGSTTIRSLDQELRFRDTNMKLIDEYSRPKFHIAG 871 (1156)
Q Consensus 792 l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~e~l~Gi~tIra~~~e~~~~~~~~~~~~~~~~~~~~~~~ 871 (1156)
++++++.+++++.++..++.+..+...+...+..+.+.+.+.|+++|+++||+|++|+.+.+++.+..++..+.......
T Consensus 165 l~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~ 244 (587)
T 3qf4_A 165 LSSVLIFLIPPIVLLFVWLTKKGNPLFRKIQESTDEVNRVVRENLLGVRVVRAFRREEYENENFRKANESLRRSIISAFS 244 (587)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 87777666666666666666666777777777888999999999999999999999999999999988887776665554
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-HHcCCCcc-----------------------chHHHHHHHhHHHHHHHHhhcCCC
Q 037346 872 AMEWLRFCIDMLSSITFAFSLAFL-ISVPNGII-----------------------HPYKNLERKIISVERILQCACIPS 927 (1156)
Q Consensus 872 ~~~~~~~~l~~~~~~~~~~~~~~~-~~~~~~~~-----------------------~~~~~~~~~~~s~~Ri~~~~~~~~ 927 (1156)
...+......++..+..++++.+. .....+.+ .....+.....+++|+.++.+.++
T Consensus 245 ~~~~~~~~~~~~~~~~~~~vl~~g~~~v~~g~lt~g~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~s~~ri~~~l~~~~ 324 (587)
T 3qf4_A 245 LIVFALPLFIFIVNMGMIAVLWFGGVLVRNNQMEIGSIMAYTNYLMQIMFSLMMIGNILNFIVRASASAKRVLEVLNEKP 324 (587)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 444433333332222211111110 00001111 112456677889999999988765
Q ss_pred CCcccccCCCCCCCCCCCCeEEEEEEEEEEcCCCC---------------ceeeCCCCCCHHHHHHHHhhcccCCCceEE
Q 037346 928 EPALVIEATKPNNSRPSHGEVNIRHLQVRYAPNLP---------------LVLRGRTGSGKSTLIQTLFRIVESTAGHIL 992 (1156)
Q Consensus 928 e~~~~~~~~~~~~~~p~~g~I~~~~Vsf~Y~~~~~---------------~vL~G~SGsGKSTL~~lL~rl~~p~~G~I~ 992 (1156)
+.+.. ..+...++..|.|+|+||+|+|+++.+ ++|.||||||||||+++|+|+++|++|+|.
T Consensus 325 ~~~~~---~~~~~~~~~~~~i~~~~v~~~y~~~~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~ 401 (587)
T 3qf4_A 325 AIEEA---DNALALPNVEGSVSFENVEFRYFENTDPVLSGVNFSVKPGSLVAVLGETGSGKSTLMNLIPRLIDPERGRVE 401 (587)
T ss_dssp SCCCC---TTCBCCSCCCCCEEEEEEEECSSSSSCCSEEEEEEEECTTCEEEEECSSSSSHHHHHHTTTTSSCCSEEEEE
T ss_pred ccCCC---CCccccCCCCCcEEEEEEEEEcCCCCCcceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCccCCCcEEE
Confidence 53211 111122345678999999999964332 356699999999999999999999999999
Q ss_pred EcCeeCCCCChHHHhhcCeeeccccccccccchhccCCCCC-CCHHHHHHHHHHcCCChHHHhhcCCcccc---------
Q 037346 993 IDGKDISLIGLHDLRTRLSIIPQDPTMFEGTTRSNLDPLEE-HADEQIWEALDKCQLGDEVRKKKGKLDSQ--------- 1062 (1156)
Q Consensus 993 idG~di~~i~~~~LR~~i~~VpQdp~LF~gTIr~Nl~~~~~-~~deei~~al~~~~l~~~i~~lp~gl~s~--------- 1062 (1156)
+||+|+++++.+++|++|++|||||.+|++||+|||.++.+ .++++++++++.+++++++..+|+|+++.
T Consensus 402 i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~~~~~~~~~~LS 481 (587)
T 3qf4_A 402 VDELDVRTVKLKDLRGHISAVPQETVLFSGTIKENLKWGREDATDDEIVEAAKIAQIHDFIISLPEGYDSRVERGGRNFS 481 (587)
T ss_dssp ESSSBGGGBCHHHHHHHEEEECSSCCCCSEEHHHHHTTTCSSCCHHHHHHHHHHTTCHHHHHTSSSGGGCEECSSSCSSC
T ss_pred ECCEEcccCCHHHHHhheEEECCCCcCcCccHHHHHhccCCCCCHHHHHHHHHHhCcHHHHHhcccchhhHhcCCCCCcC
Confidence 99999999999999999999999999999999999998754 67899999999999999999999999864
Q ss_pred ---------ccccccCCCEEEEecCCcCCCHHHHHHHHHHHHHhcCCceEEEeecCcccccccCEEEEEeCcEEeeecCh
Q 037346 1063 ---------GRVLLKKSKVLVLDEATASVDTATDNQIQQTLRQHFSDCTVVTIAHRITSVLDSAMVLLLNHGLIKEYDSP 1133 (1156)
Q Consensus 1063 ---------ARALLr~~~ILiLDEaTS~LD~~te~~I~~~l~~~~~~~TvI~IaHrl~ti~~~D~I~Vl~~G~IvE~G~~ 1133 (1156)
||||+++|+|||||||||+||+++++.|++.|++..+++|+|+||||++++..||||+||++|+|+|.|+|
T Consensus 482 gGqrQrv~lARal~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~l~~~~~~d~i~vl~~G~i~~~g~~ 561 (587)
T 3qf4_A 482 GGQKQRLSIARALVKKPKVLILDDCTSSVDPITEKRILDGLKRYTKGCTTFIITQKIPTALLADKILVLHEGKVAGFGTH 561 (587)
T ss_dssp HHHHHHHHHHHHHHTCCSEEEEESCCTTSCHHHHHHHHHHHHHHSTTCEEEEEESCHHHHTTSSEEEEEETTEEEEEECH
T ss_pred HHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHhCCCCEEEEEecChHHHHhCCEEEEEECCEEEEECCH
Confidence 89999999999999999999999999999999999899999999999999999999999999999999999
Q ss_pred hHHhcCCCChHHHHHHHHh
Q 037346 1134 TKLLENKSSSFAQLVAEYT 1152 (1156)
Q Consensus 1134 ~eLl~~~~g~f~~l~~~~~ 1152 (1156)
+||+++ ++.|+++++.+.
T Consensus 562 ~el~~~-~~~~~~~~~~~~ 579 (587)
T 3qf4_A 562 KELLEH-CKPYREIYESQF 579 (587)
T ss_dssp HHHHHH-CHHHHHHHHHHC
T ss_pred HHHHhC-CcHHHHHHHHHh
Confidence 999975 689999998653
|
| >3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae} | Back alignment and structure |
|---|
Probab=100.00 E-value=8.3e-61 Score=589.61 Aligned_cols=430 Identities=22% Similarity=0.344 Sum_probs=364.2
Q ss_pred HHHHHHHHHHHHHHHHhccccccccccccccchhhhhcccccccchhhhcccchHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 037346 712 AGYKTATQLFNKMHVCIFRAPMYFFDSTPSGRILNRVSENVKWADQSAADMDIPYDIGAFAFSMIQLLGIIVVMSLVAWQ 791 (1156)
Q Consensus 712 ~~~~~~~~l~~~l~~~ll~~p~~ff~~~~~G~il~R~s~d~~~~d~~~~d~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 791 (1156)
.+.++..++|.++++++++.|+.||+++++|++++|++ .|+..++..+...+..++..++.+++.+++++.++|+
T Consensus 92 ~~~~~~~~lr~~l~~~ll~~~~~~~~~~~~g~l~~rl~-----~d~~~i~~~~~~~~~~~~~~~~~~i~~~~~l~~~~~~ 166 (582)
T 3b5x_A 92 VSGNVVMQMRRRLFNHFMHMPVRFFDQESTGGLLSRIT-----YDSEQVAGATSRALVSIVREGASIIGLLTLMFWNSWQ 166 (582)
T ss_pred HHHHHHHHHHHHHHHHHHcCCHHHHCCCCHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Confidence 45688889999999999999999999999999999999 7777787777777888888888888899999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhChHHHHHHhhccchhhhhhcchHHHHHHHHHHHHHHHhhHHHHHHH
Q 037346 792 VLIVFVPVIATFIWYQQYYITSTRELSRLIGVCKAPVIQQFSETISGSTTIRSLDQELRFRDTNMKLIDEYSRPKFHIAG 871 (1156)
Q Consensus 792 l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~e~l~Gi~tIra~~~e~~~~~~~~~~~~~~~~~~~~~~~ 871 (1156)
++++++.++++++++..++.+..++..+...+..+...+.+.|+++|+++||+|+.|+.+.+++.+..++..+.......
T Consensus 167 l~li~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~ 246 (582)
T 3b5x_A 167 LSLVLIVVAPVVAFAISFVSKRFRKISRNMQTAMGHVTSSAEQMLKGHKVVLSYGGQEVERKRFDKVSNSMRQQTMKLVS 246 (582)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHH
Confidence 98887777777766777777777778787888889999999999999999999999999999999999999888888777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-HHcCCCccc-----------------------hHHHHHHHhHHHHHHHHhhcCCC
Q 037346 872 AMEWLRFCIDMLSSITFAFSLAFL-ISVPNGIIH-----------------------PYKNLERKIISVERILQCACIPS 927 (1156)
Q Consensus 872 ~~~~~~~~l~~~~~~~~~~~~~~~-~~~~~~~~~-----------------------~~~~~~~~~~s~~Ri~~~~~~~~ 927 (1156)
...|......++..+..++++.+. .....+.++ ....+.....+++|+.++.+.++
T Consensus 247 ~~~~~~~~~~~~~~~~~~~i~~~g~~~v~~g~lt~g~l~~~~~~~~~~~~pl~~l~~~~~~~~~~~~a~~ri~~~l~~~~ 326 (582)
T 3b5x_A 247 AQSIADPVIQMIASLALFAVLFLASVDSIRAELTPGTFTVVFSAMFGLMRPLKALTSVTSEFQRGMAACQTLFGLMDLET 326 (582)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 777777666655544333222211 011111111 12567778899999999988765
Q ss_pred CCcccccCCCCCCCCCCCCeEEEEEEEEEEcCC-C--------------CceeeCCCCCCHHHHHHHHhhcccCCCceEE
Q 037346 928 EPALVIEATKPNNSRPSHGEVNIRHLQVRYAPN-L--------------PLVLRGRTGSGKSTLIQTLFRIVESTAGHIL 992 (1156)
Q Consensus 928 e~~~~~~~~~~~~~~p~~g~I~~~~Vsf~Y~~~-~--------------~~vL~G~SGsGKSTL~~lL~rl~~p~~G~I~ 992 (1156)
+.+. . ..+.++..|.|+++||+|+|+++ . .++|.||||||||||+++|+|+++|++|+|.
T Consensus 327 ~~~~---~--~~~~~~~~~~i~~~~v~~~y~~~~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTll~~l~g~~~p~~G~i~ 401 (582)
T 3b5x_A 327 ERDN---G--KYEAERVNGEVDVKDVTFTYQGKEKPALSHVSFSIPQGKTVALVGRSGSGKSTIANLFTRFYDVDSGSIC 401 (582)
T ss_pred cCCC---C--CCCCCCCCCeEEEEEEEEEcCCCCccccccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCCEEE
Confidence 5321 1 11123345789999999999642 2 2356699999999999999999999999999
Q ss_pred EcCeeCCCCChHHHhhcCeeeccccccccccchhccCCCC--CCCHHHHHHHHHHcCCChHHHhhcCCcccc--------
Q 037346 993 IDGKDISLIGLHDLRTRLSIIPQDPTMFEGTTRSNLDPLE--EHADEQIWEALDKCQLGDEVRKKKGKLDSQ-------- 1062 (1156)
Q Consensus 993 idG~di~~i~~~~LR~~i~~VpQdp~LF~gTIr~Nl~~~~--~~~deei~~al~~~~l~~~i~~lp~gl~s~-------- 1062 (1156)
+||+|+++++.+++|+++++|||+|.+|++|++|||.++. +.++++++++++.+++++++.++|+|+|+.
T Consensus 402 ~~g~~~~~~~~~~~~~~i~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~~~~~p~g~~t~~~~~~~~L 481 (582)
T 3b5x_A 402 LDGHDVRDYKLTNLRRHFALVSQNVHLFNDTIANNIAYAAEGEYTREQIEQAARQAHAMEFIENMPQGLDTVIGENGTSL 481 (582)
T ss_pred ECCEEhhhCCHHHHhcCeEEEcCCCccccccHHHHHhccCCCCCCHHHHHHHHHHCCCHHHHHhCcccccchhcCCCCcC
Confidence 9999999999999999999999999999999999998865 467899999999999999999999999864
Q ss_pred ----------ccccccCCCEEEEecCCcCCCHHHHHHHHHHHHHhcCCceEEEeecCcccccccCEEEEEeCcEEeeecC
Q 037346 1063 ----------GRVLLKKSKVLVLDEATASVDTATDNQIQQTLRQHFSDCTVVTIAHRITSVLDSAMVLLLNHGLIKEYDS 1132 (1156)
Q Consensus 1063 ----------ARALLr~~~ILiLDEaTS~LD~~te~~I~~~l~~~~~~~TvI~IaHrl~ti~~~D~I~Vl~~G~IvE~G~ 1132 (1156)
||||+++|+|||||||||+||+++++.|++.|++..+++|+|+||||++++..||+|+||++|+|+|.|+
T Consensus 482 SgGq~qr~~iAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~~~~~~~~d~i~~l~~G~i~~~g~ 561 (582)
T 3b5x_A 482 SGGQRQRVAIARALLRDAPVLILDEATSALDTESERAIQAALDELQKNKTVLVIAHRLSTIEQADEILVVDEGEIIERGR 561 (582)
T ss_pred CHHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHcCCCEEEEEecCHHHHHhCCEEEEEECCEEEEECC
Confidence 8999999999999999999999999999999999888999999999999999999999999999999999
Q ss_pred hhHHhcCCCChHHHHHHHHh
Q 037346 1133 PTKLLENKSSSFAQLVAEYT 1152 (1156)
Q Consensus 1133 ~~eLl~~~~g~f~~l~~~~~ 1152 (1156)
|+||+++ ++.|+++++.+.
T Consensus 562 ~~~l~~~-~~~~~~~~~~q~ 580 (582)
T 3b5x_A 562 HADLLAQ-DGAYAQLHRIQF 580 (582)
T ss_pred HHHHHhC-CcHHHHHHHHhh
Confidence 9999975 789999998764
|
| >3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A | Back alignment and structure |
|---|
Probab=100.00 E-value=5.6e-61 Score=591.11 Aligned_cols=430 Identities=22% Similarity=0.331 Sum_probs=365.7
Q ss_pred HHHHHHHHHHHHHHHHhccccccccccccccchhhhhcccccccchhhhcccchHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 037346 712 AGYKTATQLFNKMHVCIFRAPMYFFDSTPSGRILNRVSENVKWADQSAADMDIPYDIGAFAFSMIQLLGIIVVMSLVAWQ 791 (1156)
Q Consensus 712 ~~~~~~~~l~~~l~~~ll~~p~~ff~~~~~G~il~R~s~d~~~~d~~~~d~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 791 (1156)
.+.++..++|.++++++++.|+.||+++++|++++|++ .|+..++..+...+..++..++.+++.+++++.++|+
T Consensus 92 ~~~~~~~~lr~~l~~~l~~~~~~~~~~~~~g~l~~r~~-----~d~~~i~~~~~~~~~~~~~~~~~~i~~~~~l~~~~~~ 166 (582)
T 3b60_A 92 VSGKVVMTMRRRLFGHMMGMPVAFFDKQSTGTLLSRIT-----YDSEQVASSSSGALITVVREGASIIGLFIMMFYYSWQ 166 (582)
T ss_dssp HHHHHHHHHHHHHHHHHHTCCSTHHHHSCHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHHHHHHHcCCHHHHCCCChhHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Confidence 45688889999999999999999999999999999999 7777888877778888888888888888999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhChHHHHHHhhccchhhhhhcchHHHHHHHHHHHHHHHhhHHHHHHH
Q 037346 792 VLIVFVPVIATFIWYQQYYITSTRELSRLIGVCKAPVIQQFSETISGSTTIRSLDQELRFRDTNMKLIDEYSRPKFHIAG 871 (1156)
Q Consensus 792 l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~e~l~Gi~tIra~~~e~~~~~~~~~~~~~~~~~~~~~~~ 871 (1156)
++++++.++++++++..++.+..++..+...+..++..+.+.|+++|+++||+|+.|+.+.+++.+..++..+.......
T Consensus 167 l~li~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~ 246 (582)
T 3b60_A 167 LSIILVVLAPIVSIAIRVVSKRFRSISKNMQNTMGQVTTSAEQMLKGHKEVLIFGGQEVETKRFDKVSNKMRLQGMKMVS 246 (582)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhCcCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88877776676666777777777888888888889999999999999999999999999999999999999998888888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-HcCCCccc-----------------------hHHHHHHHhHHHHHHHHhhcCCC
Q 037346 872 AMEWLRFCIDMLSSITFAFSLAFLI-SVPNGIIH-----------------------PYKNLERKIISVERILQCACIPS 927 (1156)
Q Consensus 872 ~~~~~~~~l~~~~~~~~~~~~~~~~-~~~~~~~~-----------------------~~~~~~~~~~s~~Ri~~~~~~~~ 927 (1156)
...|......++..+..++++.+.. ....+.++ ....+.....+++|+.++.+.++
T Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~g~lt~g~l~~~~~~~~~~~~pl~~l~~~~~~~~~~~~a~~ri~~~l~~~~ 326 (582)
T 3b60_A 247 ASSISDPIIQLIASLALAFVLYAASFPSVMDSLTAGTITVVFSSMIALMRPLKSLTNVNAQFQRGMAACQTLFAILDSEQ 326 (582)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHSSSTTSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 8888777776665544333322211 11111111 12567778889999999988766
Q ss_pred CCcccccCCCCCCCCCCCCeEEEEEEEEEEcCC-CC--------------ceeeCCCCCCHHHHHHHHhhcccCCCceEE
Q 037346 928 EPALVIEATKPNNSRPSHGEVNIRHLQVRYAPN-LP--------------LVLRGRTGSGKSTLIQTLFRIVESTAGHIL 992 (1156)
Q Consensus 928 e~~~~~~~~~~~~~~p~~g~I~~~~Vsf~Y~~~-~~--------------~vL~G~SGsGKSTL~~lL~rl~~p~~G~I~ 992 (1156)
+.+. . ....++..+.|+++||+|+|+++ .+ ++|.||||||||||+++|+|+++|++|+|.
T Consensus 327 ~~~~---~--~~~~~~~~~~i~~~~v~~~y~~~~~~~l~~v~~~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~p~~G~i~ 401 (582)
T 3b60_A 327 EKDE---G--KRVIDRATGDLEFRNVTFTYPGREVPALRNINLKIPAGKTVALVGRSGSGKSTIASLITRFYDIDEGHIL 401 (582)
T ss_dssp SCCC---C--CBCCSCCCCCEEEEEEEECSSSSSCCSEEEEEEEECTTCEEEEEECTTSSHHHHHHHHTTTTCCSEEEEE
T ss_pred CccC---C--CCCCCCCCCcEEEEEEEEEcCCCCCccccceeEEEcCCCEEEEECCCCCCHHHHHHHHhhccCCCCCeEE
Confidence 5321 1 11123345779999999999643 22 346699999999999999999999999999
Q ss_pred EcCeeCCCCChHHHhhcCeeeccccccccccchhccCCCC--CCCHHHHHHHHHHcCCChHHHhhcCCcccc--------
Q 037346 993 IDGKDISLIGLHDLRTRLSIIPQDPTMFEGTTRSNLDPLE--EHADEQIWEALDKCQLGDEVRKKKGKLDSQ-------- 1062 (1156)
Q Consensus 993 idG~di~~i~~~~LR~~i~~VpQdp~LF~gTIr~Nl~~~~--~~~deei~~al~~~~l~~~i~~lp~gl~s~-------- 1062 (1156)
+||+|+++++.+++|+++++|||+|.+|++|++|||.++. +.++++++++++.+++++++.++|+|+++.
T Consensus 402 ~~g~~~~~~~~~~~~~~i~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~l~~~~l~~~~~~~p~g~~~~~~~~~~~L 481 (582)
T 3b60_A 402 MDGHDLREYTLASLRNQVALVSQNVHLFNDTVANNIAYARTEEYSREQIEEAARMAYAMDFINKMDNGLDTIIGENGVLL 481 (582)
T ss_dssp ETTEETTTBCHHHHHHTEEEECSSCCCCSSBHHHHHHTTTTSCCCHHHHHHHHHTTTCHHHHHHSTTGGGSBCCTTSCSS
T ss_pred ECCEEccccCHHHHHhhCeEEccCCcCCCCCHHHHHhccCCCCCCHHHHHHHHHHcCCHHHHHhccccccccccCCCCCC
Confidence 9999999999999999999999999999999999998764 467899999999999999999999999864
Q ss_pred ----------ccccccCCCEEEEecCCcCCCHHHHHHHHHHHHHhcCCceEEEeecCcccccccCEEEEEeCcEEeeecC
Q 037346 1063 ----------GRVLLKKSKVLVLDEATASVDTATDNQIQQTLRQHFSDCTVVTIAHRITSVLDSAMVLLLNHGLIKEYDS 1132 (1156)
Q Consensus 1063 ----------ARALLr~~~ILiLDEaTS~LD~~te~~I~~~l~~~~~~~TvI~IaHrl~ti~~~D~I~Vl~~G~IvE~G~ 1132 (1156)
||||+++|+|||||||||+||+++++.|++.|++..+++|+|+||||++++..||+|+||++|+|+|.|+
T Consensus 482 SgGq~qrl~iAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~~~~~~~~d~i~~l~~G~i~~~g~ 561 (582)
T 3b60_A 482 SGGQRQRIAIARALLRDSPILILDEATSALDTESERAIQAALDELQKNRTSLVIAHRLSTIEQADEIVVVEDGIIVERGT 561 (582)
T ss_dssp CHHHHHHHHHHHHHHHCCSEEEEETTTSSCCHHHHHHHHHHHHHHHTTSEEEEECSCGGGTTTCSEEEEEETTEEEEEEC
T ss_pred CHHHHHHHHHHHHHHhCCCEEEEECccccCCHHHHHHHHHHHHHHhCCCEEEEEeccHHHHHhCCEEEEEECCEEEEecC
Confidence 8999999999999999999999999999999999888999999999999999999999999999999999
Q ss_pred hhHHhcCCCChHHHHHHHHh
Q 037346 1133 PTKLLENKSSSFAQLVAEYT 1152 (1156)
Q Consensus 1133 ~~eLl~~~~g~f~~l~~~~~ 1152 (1156)
|+||+++ ++.|+++++.+.
T Consensus 562 ~~~l~~~-~~~~~~~~~~q~ 580 (582)
T 3b60_A 562 HSELLAQ-HGVYAQLHKMQF 580 (582)
T ss_dssp HHHHHHH-TSSHHHHHHHTC
T ss_pred HHHHHHc-CCHHHHHHHHhc
Confidence 9999975 789999998653
|
| >4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-61 Score=595.75 Aligned_cols=431 Identities=20% Similarity=0.289 Sum_probs=350.6
Q ss_pred HHHHHHHHHHHHHHHHhccccccccccccccchhhhhcccccccchhhhcccchHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 037346 712 AGYKTATQLFNKMHVCIFRAPMYFFDSTPSGRILNRVSENVKWADQSAADMDIPYDIGAFAFSMIQLLGIIVVMSLVAWQ 791 (1156)
Q Consensus 712 ~~~~~~~~l~~~l~~~ll~~p~~ff~~~~~G~il~R~s~d~~~~d~~~~d~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 791 (1156)
.+.++..++|.++++++++.|++||+++++|++++|++ .|+..++..+...+..++..++.+++.+++++..+|+
T Consensus 88 ~~~~~~~~lr~~l~~~ll~~~~~~~~~~~~G~l~~r~~-----~D~~~i~~~~~~~~~~~~~~~~~~i~~~~~l~~~~~~ 162 (578)
T 4a82_A 88 TSNKILYDIRKKLYNHLQALSARFYANNQVGQVISRVI-----NDVEQTKDFILTGLMNIWLDCITIIIALSIMFFLDVK 162 (578)
T ss_dssp HHHHHHHHHHHHHHHHHHHSCHHHHHTSCHHHHHHHHH-----HHHHHTHHHHHCCCCCHHHHHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHHHHHHHHCCCHHHHcCCChHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Confidence 46688889999999999999999999999999999999 5655555544444445566667777788888889999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhChHHHHHHhhccchhhhhhcchHHHHHHHHHHHHHHHhhHHHHHHH
Q 037346 792 VLIVFVPVIATFIWYQQYYITSTRELSRLIGVCKAPVIQQFSETISGSTTIRSLDQELRFRDTNMKLIDEYSRPKFHIAG 871 (1156)
Q Consensus 792 l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~e~l~Gi~tIra~~~e~~~~~~~~~~~~~~~~~~~~~~~ 871 (1156)
++++++.++++++.+..++.+..++..+...+..++..+.+.|+++|+++||+|++|+.+.+++.+..++..+.......
T Consensus 163 l~l~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~ 242 (578)
T 4a82_A 163 LTLAALFIFPFYILTVYVFFGRLRKLTRERSQALAEVQGFLHERVQGISVVKSFAIEDNEAKNFDKKNTNFLTRALKHTR 242 (578)
T ss_dssp THHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88887776677677777777778888888888899999999999999999999999999999999988887776666555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH---HHH--------------c-------CCCccchHHHHHHHhHHHHHHHHhhcCCC
Q 037346 872 AMEWLRFCIDMLSSITFAFSLAF---LIS--------------V-------PNGIIHPYKNLERKIISVERILQCACIPS 927 (1156)
Q Consensus 872 ~~~~~~~~l~~~~~~~~~~~~~~---~~~--------------~-------~~~~~~~~~~~~~~~~s~~Ri~~~~~~~~ 927 (1156)
...+.......+..+..++++.+ .+. . ..........+.....+++|+.++.+.++
T Consensus 243 ~~~~~~~~~~~~~~~~~~~v~~~g~~~v~~g~lt~g~l~~~~~~~~~~~~~l~~l~~~~~~~~~~~~s~~ri~~~l~~~~ 322 (578)
T 4a82_A 243 WNAYSFAAINTVTDIGPIIVIGVGAYLAISGSITVGTLAAFVGYLELLFGPLRRLVASFTTLTQSFASMDRVFQLIDEDY 322 (578)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHTHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHTCCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 44444443333322211111110 000 0 00011122567788899999999998766
Q ss_pred CCcccccCCCCCCCCCCCCeEEEEEEEEEEcCCCC---------------ceeeCCCCCCHHHHHHHHhhcccCCCceEE
Q 037346 928 EPALVIEATKPNNSRPSHGEVNIRHLQVRYAPNLP---------------LVLRGRTGSGKSTLIQTLFRIVESTAGHIL 992 (1156)
Q Consensus 928 e~~~~~~~~~~~~~~p~~g~I~~~~Vsf~Y~~~~~---------------~vL~G~SGsGKSTL~~lL~rl~~p~~G~I~ 992 (1156)
+.... ......++..|.|+++||+|+|+++.+ ++|.||||||||||+++|+|+++|++|+|.
T Consensus 323 ~~~~~---~~~~~~~~~~~~i~~~~v~~~y~~~~~~~l~~isl~i~~G~~~~ivG~sGsGKSTll~~l~g~~~p~~G~i~ 399 (578)
T 4a82_A 323 DIKNG---VGAQPIEIKQGRIDIDHVSFQYNDNEAPILKDINLSIEKGETVAFVGMSGGGKSTLINLIPRFYDVTSGQIL 399 (578)
T ss_dssp SSCCC---TTCCCCCCCSCCEEEEEEEECSCSSSCCSEEEEEEEECTTCEEEEECSTTSSHHHHHTTTTTSSCCSEEEEE
T ss_pred cccCC---CCccccCCCCCeEEEEEEEEEcCCCCCcceeeeEEEECCCCEEEEECCCCChHHHHHHHHhcCCCCCCcEEE
Confidence 54321 111222345678999999999965332 346699999999999999999999999999
Q ss_pred EcCeeCCCCChHHHhhcCeeeccccccccccchhccCCCC-CCCHHHHHHHHHHcCCChHHHhhcCCcccc---------
Q 037346 993 IDGKDISLIGLHDLRTRLSIIPQDPTMFEGTTRSNLDPLE-EHADEQIWEALDKCQLGDEVRKKKGKLDSQ--------- 1062 (1156)
Q Consensus 993 idG~di~~i~~~~LR~~i~~VpQdp~LF~gTIr~Nl~~~~-~~~deei~~al~~~~l~~~i~~lp~gl~s~--------- 1062 (1156)
+||+|+++++.+++|+++++|||||.+|++||+|||.++. ..++++++++++.+++++++..+|+|+++.
T Consensus 400 ~~g~~~~~~~~~~~r~~i~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~g~~t~~~~~g~~LS 479 (578)
T 4a82_A 400 IDGHNIKDFLTGSLRNQIGLVQQDNILFSDTVKENILLGRPTATDEEVVEAAKMANAHDFIMNLPQGYDTEVGERGVKLS 479 (578)
T ss_dssp ETTEEGGGSCHHHHHHTEEEECSSCCCCSSBHHHHHGGGCSSCCHHHHHHHHHHTTCHHHHHTSTTGGGCBCCGGGTTSC
T ss_pred ECCEEhhhCCHHHHhhheEEEeCCCccCcccHHHHHhcCCCCCCHHHHHHHHHHhCcHHHHHhCcchhhhhhccCCCcCC
Confidence 9999999999999999999999999999999999998765 456899999999999999999999999864
Q ss_pred ---------ccccccCCCEEEEecCCcCCCHHHHHHHHHHHHHhcCCceEEEeecCcccccccCEEEEEeCcEEeeecCh
Q 037346 1063 ---------GRVLLKKSKVLVLDEATASVDTATDNQIQQTLRQHFSDCTVVTIAHRITSVLDSAMVLLLNHGLIKEYDSP 1133 (1156)
Q Consensus 1063 ---------ARALLr~~~ILiLDEaTS~LD~~te~~I~~~l~~~~~~~TvI~IaHrl~ti~~~D~I~Vl~~G~IvE~G~~ 1133 (1156)
||||+++|+|||||||||+||+++++.|++.|++..+++|+|+||||++++..||+|+||++|+|+|.|+|
T Consensus 480 gGq~Qrv~lAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~t~i~itH~l~~~~~~d~i~~l~~G~i~~~g~~ 559 (578)
T 4a82_A 480 GGQKQRLSIARIFLNNPPILILDEATSALDLESESIIQEALDVLSKDRTTLIVAHRLSTITHADKIVVIENGHIVETGTH 559 (578)
T ss_dssp HHHHHHHHHHHHHHHCCSEEEEESTTTTCCHHHHHHHHHHHHHHTTTSEEEEECSSGGGTTTCSEEEEEETTEEEEEECH
T ss_pred HHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHcCCCEEEEEecCHHHHHcCCEEEEEECCEEEEECCH
Confidence 89999999999999999999999999999999998889999999999999999999999999999999999
Q ss_pred hHHhcCCCChHHHHHHHH
Q 037346 1134 TKLLENKSSSFAQLVAEY 1151 (1156)
Q Consensus 1134 ~eLl~~~~g~f~~l~~~~ 1151 (1156)
+||+++ +|.|+++++.+
T Consensus 560 ~el~~~-~~~~~~~~~~q 576 (578)
T 4a82_A 560 RELIAK-QGAYEHLYSIQ 576 (578)
T ss_dssp HHHHHT-TSHHHHHHTTT
T ss_pred HHHHhC-CcHHHHHHHhh
Confidence 999975 78999998754
|
| >3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-61 Score=641.47 Aligned_cols=433 Identities=19% Similarity=0.264 Sum_probs=359.4
Q ss_pred HHHHHHHHHHHHHHHHhccccccccccccccchhhhhcccccccchhhhcccchHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 037346 712 AGYKTATQLFNKMHVCIFRAPMYFFDSTPSGRILNRVSENVKWADQSAADMDIPYDIGAFAFSMIQLLGIIVVMSLVAWQ 791 (1156)
Q Consensus 712 ~~~~~~~~l~~~l~~~ll~~p~~ff~~~~~G~il~R~s~d~~~~d~~~~d~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 791 (1156)
.+.+...++|.++|++++++|++|||++++|++++|++ .|+..++..++..+..++..++.+++.+++++..+|+
T Consensus 135 ~~~~~~~~lr~~l~~~l~~~~~~~f~~~~~G~l~sr~~-----~D~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 209 (1284)
T 3g5u_A 135 AAGRQIHKIRQKFFHAIMNQEIGWFDVHDVGELNTRLT-----DDVSKINEGIGDKIGMFFQAMATFFGGFIIGFTRGWK 209 (1284)
T ss_dssp HHHHHHHHHHHHHHHHHTTSTTHHHHSCCSHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSS
T ss_pred HHHHHHHHHHHHHHHHHHcCCHHHHccCCHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56789999999999999999999999999999999999 8888999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhChHHHHHHhhccchhhhhhcchHHHHHHHHHHHHHHHhhHHHHHHH
Q 037346 792 VLIVFVPVIATFIWYQQYYITSTRELSRLIGVCKAPVIQQFSETISGSTTIRSLDQELRFRDTNMKLIDEYSRPKFHIAG 871 (1156)
Q Consensus 792 l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~e~l~Gi~tIra~~~e~~~~~~~~~~~~~~~~~~~~~~~ 871 (1156)
+++++++++++++++..++.+..+...+...+..+++.+++.|+++|+++||+|++|+++.++|.+..++..+...+...
T Consensus 210 l~l~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~~ikaf~~e~~~~~~~~~~~~~~~~~~~~~~~ 289 (1284)
T 3g5u_A 210 LTLVILAISPVLGLSAGIWAKILSSFTDKELHAYAKAGAVAEEVLAAIRTVIAFGGQKKELERYNNNLEEAKRLGIKKAI 289 (1284)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCCCCHHHHHTTCCCCSHHHHHHHHHHHHHHHHHTTTH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99888888888888788888888888888888999999999999999999999999999999999998887776554333
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH------------------------HHHcCCCccchHHHHHHHhHHHHHHHHhhcCCC
Q 037346 872 AMEWLRFCIDMLSSITFAFSLAF------------------------LISVPNGIIHPYKNLERKIISVERILQCACIPS 927 (1156)
Q Consensus 872 ~~~~~~~~l~~~~~~~~~~~~~~------------------------~~~~~~~~~~~~~~~~~~~~s~~Ri~~~~~~~~ 927 (1156)
...+......++..+..++++.+ ..............+.....+++|+.++.+.++
T Consensus 290 ~~~~~~~~~~~~~~~~~~~~~~~g~~lv~~g~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ri~~~l~~~~ 369 (1284)
T 3g5u_A 290 TANISMGAAFLLIYASYALAFWYGTSLVISKEYSIGQVLTVFFSVLIGAFSVGQASPNIEAFANARGAAYEVFKIIDNKP 369 (1284)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSCSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 33222222222211111111100 000000111122556778889999999987665
Q ss_pred CCcccccCCCCCCCCCCCCeEEEEEEEEEEcCC----------------CCceeeCCCCCCHHHHHHHHhhcccCCCceE
Q 037346 928 EPALVIEATKPNNSRPSHGEVNIRHLQVRYAPN----------------LPLVLRGRTGSGKSTLIQTLFRIVESTAGHI 991 (1156)
Q Consensus 928 e~~~~~~~~~~~~~~p~~g~I~~~~Vsf~Y~~~----------------~~~vL~G~SGsGKSTL~~lL~rl~~p~~G~I 991 (1156)
+.+...+.. ....+..|.|+|+||+|+|+.+ +.++|+||||||||||+++|+|+|+|++|+|
T Consensus 370 ~~~~~~~~~--~~~~~~~g~i~~~~v~~~y~~~~~~~vL~~isl~i~~G~~~~ivG~sGsGKSTl~~ll~g~~~~~~G~i 447 (1284)
T 3g5u_A 370 SIDSFSKSG--HKPDNIQGNLEFKNIHFSYPSRKEVQILKGLNLKVKSGQTVALVGNSGCGKSTTVQLMQRLYDPLDGMV 447 (1284)
T ss_dssp CCSSCCSSC--CCCTTCCCCEEEEEEEECCSSTTSCCSEEEEEEEECTTCEEEEECCSSSSHHHHHHHTTTSSCCSEEEE
T ss_pred cCCcccccC--CCCCCCCCeEEEEEEEEEcCCCCCCcceecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEE
Confidence 532211111 1112346889999999999642 1234669999999999999999999999999
Q ss_pred EEcCeeCCCCChHHHhhcCeeeccccccccccchhccCCCC-CCCHHHHHHHHHHcCCChHHHhhcCCcccc--------
Q 037346 992 LIDGKDISLIGLHDLRTRLSIIPQDPTMFEGTTRSNLDPLE-EHADEQIWEALDKCQLGDEVRKKKGKLDSQ-------- 1062 (1156)
Q Consensus 992 ~idG~di~~i~~~~LR~~i~~VpQdp~LF~gTIr~Nl~~~~-~~~deei~~al~~~~l~~~i~~lp~gl~s~-------- 1062 (1156)
.+||+|+++++++++|++|++|||||.||++||+|||.++. +.++++++++++.+++++++.++|+|+++.
T Consensus 448 ~i~g~~i~~~~~~~~r~~i~~v~Q~~~l~~~ti~eNi~~g~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~L 527 (1284)
T 3g5u_A 448 SIDGQDIRTINVRYLREIIGVVSQEPVLFATTIAENIRYGREDVTMDEIEKAVKEANAYDFIMKLPHQFDTLVGERGAQL 527 (1284)
T ss_dssp EETTEEGGGSCHHHHHHHEEEECSSCCCCSSCHHHHHHHHCSSCCHHHHHHHHHHTTCHHHHHHSTTGGGCCCSSSSCSS
T ss_pred EECCEEHHhCCHHHHHhheEEEcCCCccCCccHHHHHhcCCCCCCHHHHHHHHHHhCcHHHHHhccccccccccCCCCcc
Confidence 99999999999999999999999999999999999998765 467999999999999999999999999864
Q ss_pred ----------ccccccCCCEEEEecCCcCCCHHHHHHHHHHHHHhcCCceEEEeecCcccccccCEEEEEeCcEEeeecC
Q 037346 1063 ----------GRVLLKKSKVLVLDEATASVDTATDNQIQQTLRQHFSDCTVVTIAHRITSVLDSAMVLLLNHGLIKEYDS 1132 (1156)
Q Consensus 1063 ----------ARALLr~~~ILiLDEaTS~LD~~te~~I~~~l~~~~~~~TvI~IaHrl~ti~~~D~I~Vl~~G~IvE~G~ 1132 (1156)
||||+++|+|||||||||+||++|++.|++.+++..+++|+|+||||++++.+||+|+||++|+|+|.|+
T Consensus 528 SgGq~QriaiARal~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~~~t~i~itH~l~~i~~~d~i~vl~~G~i~~~g~ 607 (1284)
T 3g5u_A 528 SGGQKQRIAIARALVRNPKILLLDEATSALDTESEAVVQAALDKAREGRTTIVIAHRLSTVRNADVIAGFDGGVIVEQGN 607 (1284)
T ss_dssp CHHHHHHHHHHHHHHHCCSEEEEESTTCSSCHHHHHHHHHHHHHHHTTSEEEEECSCHHHHTTCSEEEECSSSCCCCEEC
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHcCCCEEEEEecCHHHHHcCCEEEEEECCEEEEECC
Confidence 8999999999999999999999999999999999889999999999999999999999999999999999
Q ss_pred hhHHhcCCCChHHHHHHHHh
Q 037346 1133 PTKLLENKSSSFAQLVAEYT 1152 (1156)
Q Consensus 1133 ~~eLl~~~~g~f~~l~~~~~ 1152 (1156)
|+||+++ +|.|++++..+.
T Consensus 608 ~~~l~~~-~~~~~~~~~~~~ 626 (1284)
T 3g5u_A 608 HDELMRE-KGIYFKLVMTQT 626 (1284)
T ss_dssp HHHHHHT-TSHHHHHHHHTC
T ss_pred HHHHHhC-CCHHHHHHHHhh
Confidence 9999985 789999987543
|
| >3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B* | Back alignment and structure |
|---|
Probab=100.00 E-value=6.1e-56 Score=541.97 Aligned_cols=426 Identities=20% Similarity=0.258 Sum_probs=305.6
Q ss_pred cEEE--------eeeEEEeCCCCCCCccccceEEeeCCeEEEEEcCCCCChHHHHHHHhCCCCCCCcEE---------EE
Q 037346 357 AIEI--------IDGSFSWDFSSPNPTLRNINLKVFHGMRVAVCGTVGSGKSSCLSCILGGVPKESGII---------RL 419 (1156)
Q Consensus 357 ~i~~--------~~~~f~~~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKSTll~~i~g~~~~~~G~i---------~~ 419 (1156)
.|++ +|++++|+. ...+|+|+| ++++||+++|+||||||||||+++|+|+++|++|++ .+
T Consensus 83 ~i~i~~l~~~~~~~ls~~yg~--~~~~l~~vs-~i~~Ge~~~LiG~NGsGKSTLlkiL~Gll~p~~G~~~~~~~~~~~~~ 159 (607)
T 3bk7_A 83 AISIVNLPEQLDEDCVHRYGV--NAFVLYRLP-IVKDGMVVGIVGPNGTGKTTAVKILAGQLIPNLCEDNDSWDNVIRAF 159 (607)
T ss_dssp CCEEEEECTTGGGSEEEECST--TCCEEECCC-CCCTTSEEEEECCTTSSHHHHHHHHTTSSCCCTTTTCCCHHHHHHHT
T ss_pred eEEEecCCccccCCeEEEECC--CCeeeCCCC-CCCCCCEEEEECCCCChHHHHHHHHhCCCCCCCCccccccchhhhee
Confidence 4788 899999963 225899999 999999999999999999999999999999999995 23
Q ss_pred cC---------------eEEEEecCCc----CCCccHHHHhhcCCCCCHHHHHHHHHHhCCchhhhhCCCCCccccccCC
Q 037346 420 CG---------------TKAYVAQSPW----IQSGKIEENILFGKEMDRERYERVLEACSLKKDLEVLPFGDQTIIGERG 480 (1156)
Q Consensus 420 ~g---------------~~~~v~Q~~~----~~~~ti~eni~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~t~v~~~g 480 (1156)
+| .+++++|... ++.+|++||+..... .++.+++++.++|.+..+ +..
T Consensus 160 ~G~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~~~tv~e~l~~~~~--~~~~~~~L~~lgL~~~~~-----------~~~ 226 (607)
T 3bk7_A 160 RGNELQNYFERLKNGEIRPVVKPQYVDLLPKAVKGKVRELLKKVDE--VGKFEEVVKELELENVLD-----------REL 226 (607)
T ss_dssp TTSTHHHHHHHHHHTSCCCEEECSCGGGGGGTCCSBHHHHHHHTCC--SSCHHHHHHHTTCTTGGG-----------SBG
T ss_pred CCEehhhhhhhhhhhhcceEEeechhhhchhhccccHHHHhhhhHH--HHHHHHHHHHcCCCchhC-----------CCh
Confidence 33 2578888643 344699999975322 345678888888865443 334
Q ss_pred CCCCHHHHHHHHHHHhhccCCCeeeeeCCCCCcCHHHHHHHHHHHHh--cCCCEEEEEccCCCcccc-CCEEEEEeCCeE
Q 037346 481 INLSGGQKQRIQIARPLYQDADIFLLDDPFSPVDDHTGAHLFKFCWV--SSSKTVIYATHQVEFLPA-ADLILVIKDGKI 557 (1156)
Q Consensus 481 ~~LSgGqkqRi~lAral~~~~~illlDep~s~lD~~~~~~i~~~~~~--~~~~tvi~vtH~~~~~~~-~d~i~~l~~G~i 557 (1156)
.+|||||||||+|||||+.+|++||||||||+||+.++..+++.+.. ..|+|+|+||||++.+.. ||+|++|+++..
T Consensus 227 ~~LSGGekQRvaIAraL~~~P~lLlLDEPTs~LD~~~~~~l~~~L~~l~~~g~tvIivsHdl~~~~~~adri~vl~~~~~ 306 (607)
T 3bk7_A 227 HQLSGGELQRVAIAAALLRKAHFYFFDEPSSYLDIRQRLKVARVIRRLANEGKAVLVVEHDLAVLDYLSDVIHVVYGEPG 306 (607)
T ss_dssp GGCCHHHHHHHHHHHHHHSCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCHHHHHHHCSEEEEEESCTT
T ss_pred hhCCHHHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHHHhcCCEEEEEecChHHHHhhCCEEEEECCCcc
Confidence 68999999999999999999999999999999999999988876643 358999999999998864 999999985421
Q ss_pred EEccChHHHHhcCcchHHHHHhhhhhccCCCCCCCCCcccccccccCCCCCCCcccchhcccccCCCCcccccCccCcch
Q 037346 558 TQAGKYSDILNSGTDFMELVGAHKQALSGLDSIDRGPVSERKSINKENDGTSTTNEIVNKEENKNFQSDDEAALPKGQLV 637 (1156)
Q Consensus 558 ~~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 637 (1156)
. .|.+. . ...
T Consensus 307 ~-~g~~~---~-~~~----------------------------------------------------------------- 316 (607)
T 3bk7_A 307 V-YGIFS---K-PKG----------------------------------------------------------------- 316 (607)
T ss_dssp T-EEEEC---C-CEE-----------------------------------------------------------------
T ss_pred c-cceec---c-chh-----------------------------------------------------------------
Confidence 1 01000 0 000
Q ss_pred hHHHHhcCcccHHHHHHHHHHhccchHHHHHHHHHHHHHHHHhhhhhhhhhccccccccCCCCCchhhHHHHHHHHHHHH
Q 037346 638 QEEEREKGKVGFSVYWKYMTTAYGGVLVPFILLAQIIFQIFQIGSNYWMAWATPVAKDVNPAVGASTLIIVYVGAGYKTA 717 (1156)
Q Consensus 638 ~~e~~~~g~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 717 (1156)
..+. ...++. + . ....
T Consensus 317 ~~~~----------i~~~~~---~--------------------------~-~~~~------------------------ 332 (607)
T 3bk7_A 317 TRNG----------INEFLQ---G--------------------------Y-LKDE------------------------ 332 (607)
T ss_dssp HHHH----------HHHHHH---T--------------------------E-ETTT------------------------
T ss_pred HHHH----------HHHHHh---h--------------------------c-chhh------------------------
Confidence 0000 000000 0 0 0000
Q ss_pred HHHHHHHHHHhccccccccccccccchhhhhcccccccchhhhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 037346 718 TQLFNKMHVCIFRAPMYFFDSTPSGRILNRVSENVKWADQSAADMDIPYDIGAFAFSMIQLLGIIVVMSLVAWQVLIVFV 797 (1156)
Q Consensus 718 ~~l~~~l~~~ll~~p~~ff~~~~~G~il~R~s~d~~~~d~~~~d~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~ 797 (1156)
. .|+.. .... ..
T Consensus 333 --------------~-------------~~~~~----~~~~-~~------------------------------------ 344 (607)
T 3bk7_A 333 --------------N-------------VRFRP----YEIR-FT------------------------------------ 344 (607)
T ss_dssp --------------T-------------EECCS----SCCC-CC------------------------------------
T ss_pred --------------h-------------hhccc----cccc-cc------------------------------------
Confidence 0 00000 0000 00
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHhhChHHHHHHhhccchhhhhhcchHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Q 037346 798 PVIATFIWYQQYYITSTRELSRLIGVCKAPVIQQFSETISGSTTIRSLDQELRFRDTNMKLIDEYSRPKFHIAGAMEWLR 877 (1156)
Q Consensus 798 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~e~l~Gi~tIra~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 877 (1156)
T Consensus 345 -------------------------------------------------------------------------------- 344 (607)
T 3bk7_A 345 -------------------------------------------------------------------------------- 344 (607)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHHHHHHHHHHHHHcCCCccchHHHHHHHhHHHHHHHHhhcCCCCCcccccCCCCCCCCCCCCeEEEEEEEEEE
Q 037346 878 FCIDMLSSITFAFSLAFLISVPNGIIHPYKNLERKIISVERILQCACIPSEPALVIEATKPNNSRPSHGEVNIRHLQVRY 957 (1156)
Q Consensus 878 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~Ri~~~~~~~~e~~~~~~~~~~~~~~p~~g~I~~~~Vsf~Y 957 (1156)
.... . .....+.. .+...... .-+.+.|++++|..
T Consensus 345 --------------------~~~~--~------------------~~~~~~~~--l~~~~l~~---~~~~~~l~~~~~~v 379 (607)
T 3bk7_A 345 --------------------KLSE--R------------------VDVERETL--VEYPRLVK---DYGSFKLEVEPGEI 379 (607)
T ss_dssp --------------------CSTT--S------------------CCCCCCEE--EEECCEEE---ECSSCEEEECCEEE
T ss_pred --------------------cCCC--c------------------ccccCceE--EEEeceEE---EecceEEEeccccc
Confidence 0000 0 00000000 00000000 01234677777777
Q ss_pred cCCCCceeeCCCCCCHHHHHHHHhhcccCCCceEEEcCeeCCCCChHHHhhcCeeecccccc-ccccchhccCCC--CC-
Q 037346 958 APNLPLVLRGRTGSGKSTLIQTLFRIVESTAGHILIDGKDISLIGLHDLRTRLSIIPQDPTM-FEGTTRSNLDPL--EE- 1033 (1156)
Q Consensus 958 ~~~~~~vL~G~SGsGKSTL~~lL~rl~~p~~G~I~idG~di~~i~~~~LR~~i~~VpQdp~L-F~gTIr~Nl~~~--~~- 1033 (1156)
++++.++|.||||||||||+++|+|+++|++|+|.+ +.+++||||++.+ ++.|+++|+... ..
T Consensus 380 ~~Gei~~i~G~NGsGKSTLlk~l~Gl~~p~~G~I~~-------------~~~i~~v~Q~~~~~~~~tv~e~~~~~~~~~~ 446 (607)
T 3bk7_A 380 RKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKVEW-------------DLTVAYKPQYIKAEYEGTVYELLSKIDSSKL 446 (607)
T ss_dssp ETTCEEEEECCTTSSHHHHHHHHHTSSCCSBSCCCC-------------CCCEEEECSSCCCCCSSBHHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEE-------------eeEEEEEecCccCCCCCcHHHHHHhhhccCC
Confidence 888888999999999999999999999999999986 2469999999876 577999998542 11
Q ss_pred CCHHHHHHHHHHcCCChHHHhhcCCcccc-------ccccccCCCEEEEecCCcCCCHHHHHHHHHHHHHhc--CCceEE
Q 037346 1034 HADEQIWEALDKCQLGDEVRKKKGKLDSQ-------GRVLLKKSKVLVLDEATASVDTATDNQIQQTLRQHF--SDCTVV 1104 (1156)
Q Consensus 1034 ~~deei~~al~~~~l~~~i~~lp~gl~s~-------ARALLr~~~ILiLDEaTS~LD~~te~~I~~~l~~~~--~~~TvI 1104 (1156)
...+.+.++++..++.+.....+..|..+ ||||+++|+||||||||++||+.+...+.+.|+++. .+.|||
T Consensus 447 ~~~~~~~~~l~~~~l~~~~~~~~~~LSGGe~QRv~iAraL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvi 526 (607)
T 3bk7_A 447 NSNFYKTELLKPLGIIDLYDRNVEDLSGGELQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTAL 526 (607)
T ss_dssp HCHHHHHHTHHHHTCTTTTTSBGGGCCHHHHHHHHHHHHHTSCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHHTTCEEE
T ss_pred CHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEE
Confidence 12456788999999988776666666544 899999999999999999999999999999999864 489999
Q ss_pred EeecCcccccc-cCEEEEEeC--cEEeeecChhHHhc
Q 037346 1105 TIAHRITSVLD-SAMVLLLNH--GLIKEYDSPTKLLE 1138 (1156)
Q Consensus 1105 ~IaHrl~ti~~-~D~I~Vl~~--G~IvE~G~~~eLl~ 1138 (1156)
+|+|+++.+.. ||||+||++ |++++.|+|++++.
T Consensus 527 ~vsHd~~~~~~~adrv~vl~~~~g~~~~~g~p~~~~~ 563 (607)
T 3bk7_A 527 VVEHDVLMIDYVSDRLIVFEGEPGRHGRALPPMGMRE 563 (607)
T ss_dssp EECSCHHHHHHHCSEEEEEEEETTTEEEECCCEEHHH
T ss_pred EEeCCHHHHHHhCCEEEEEcCCcceEEecCCHHHHHh
Confidence 99999999875 999999986 88888999998875
|
| >2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A | Back alignment and structure |
|---|
Probab=100.00 E-value=9.9e-54 Score=536.59 Aligned_cols=195 Identities=22% Similarity=0.312 Sum_probs=157.8
Q ss_pred ccEEEeeeEEEeCCCCCCCccccceEEeeCCeEEEEEcCCCCChHHHHHHHhC-CCCCCCcEE-EEcCeEEEEecCC-c-
Q 037346 356 TAIEIIDGSFSWDFSSPNPTLRNINLKVFHGMRVAVCGTVGSGKSSCLSCILG-GVPKESGII-RLCGTKAYVAQSP-W- 431 (1156)
Q Consensus 356 ~~i~~~~~~f~~~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKSTll~~i~g-~~~~~~G~i-~~~g~~~~v~Q~~-~- 431 (1156)
..+...|++++|+ ++.+|+|+||+|++|++++|+||||||||||+++|+| .+. |.- .-..+++|++|++ .
T Consensus 434 ~~L~~~~ls~~yg---~~~iL~~vsl~I~~Ge~v~LiGpNGsGKSTLLk~LagG~i~---g~~~~~~~~~~~v~q~~~~~ 507 (986)
T 2iw3_A 434 EDLCNCEFSLAYG---AKILLNKTQLRLKRARRYGICGPNGCGKSTLMRAIANGQVD---GFPTQEECRTVYVEHDIDGT 507 (986)
T ss_dssp CEEEEEEEEEEET---TEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHHTCST---TCCCTTTSCEEETTCCCCCC
T ss_pred ceeEEeeEEEEEC---CEEeEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCcC---CCccccceeEEEEccccccc
Confidence 3577789999995 4579999999999999999999999999999999994 321 100 0011368999985 3
Q ss_pred CCCccHHHHhhcCCCCCHHHHHHHHHHhCCch-hhhhCCCCCccccccCCCCCCHHHHHHHHHHHhhccCCCeeeeeCCC
Q 037346 432 IQSGKIEENILFGKEMDRERYERVLEACSLKK-DLEVLPFGDQTIIGERGINLSGGQKQRIQIARPLYQDADIFLLDDPF 510 (1156)
Q Consensus 432 ~~~~ti~eni~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~g~~t~v~~~g~~LSgGqkqRi~lAral~~~~~illlDep~ 510 (1156)
....|+.||+.+...-.+++.+++++.+++.. ..+ ....+||||||||++|||||+.+|++|||||||
T Consensus 508 ~~~ltv~e~l~~~~~~~~~~v~~~L~~lgL~~~~~~-----------~~~~~LSGGqkQRvaLArAL~~~P~lLLLDEPT 576 (986)
T 2iw3_A 508 HSDTSVLDFVFESGVGTKEAIKDKLIEFGFTDEMIA-----------MPISALSGGWKMKLALARAVLRNADILLLDEPT 576 (986)
T ss_dssp CTTSBHHHHHHTTCSSCHHHHHHHHHHTTCCHHHHH-----------SBGGGCCHHHHHHHHHHHHHHTTCSEEEEESTT
T ss_pred ccCCcHHHHHHHhhcCHHHHHHHHHHHcCCChhhhc-----------CCcccCCHHHHHHHHHHHHHhcCCCEEEEECCc
Confidence 34569999998621101677888899998853 332 334689999999999999999999999999999
Q ss_pred CCcCHHHHHHHHHHHHhcCCCEEEEEccCCCccc-cCCEEEEEeCCeEE-EccChHHHHh
Q 037346 511 SPVDDHTGAHLFKFCWVSSSKTVIYATHQVEFLP-AADLILVIKDGKIT-QAGKYSDILN 568 (1156)
Q Consensus 511 s~lD~~~~~~i~~~~~~~~~~tvi~vtH~~~~~~-~~d~i~~l~~G~i~-~~g~~~~l~~ 568 (1156)
++||+.+++++.+.+.. .|+|+|+|||+++++. .||+|++|++|+++ +.|+++++..
T Consensus 577 s~LD~~~~~~l~~~L~~-~g~tvIivSHdl~~l~~~adrii~L~~G~iv~~~G~~~e~~~ 635 (986)
T 2iw3_A 577 NHLDTVNVAWLVNYLNT-CGITSITISHDSVFLDNVCEYIINYEGLKLRKYKGNFTEFVK 635 (986)
T ss_dssp TTCCHHHHHHHHHHHHH-SCSEEEEECSCHHHHHHHCSEEEEEETTEEEEEESCHHHHHH
T ss_pred cCCCHHHHHHHHHHHHh-CCCEEEEEECCHHHHHHhCCEEEEEECCeeecCCCCHHHHHh
Confidence 99999999999887655 7899999999999986 49999999999996 6899888754
|
| >1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-55 Score=534.49 Aligned_cols=178 Identities=19% Similarity=0.261 Sum_probs=151.0
Q ss_pred EEEEEEEEEEcCCCCceeeCCCCCCHHHHHHHHhhcccCCCceEEEcCeeCCCCChHHHhhcCeeecccccc-ccccchh
Q 037346 948 VNIRHLQVRYAPNLPLVLRGRTGSGKSTLIQTLFRIVESTAGHILIDGKDISLIGLHDLRTRLSIIPQDPTM-FEGTTRS 1026 (1156)
Q Consensus 948 I~~~~Vsf~Y~~~~~~vL~G~SGsGKSTL~~lL~rl~~p~~G~I~idG~di~~i~~~~LR~~i~~VpQdp~L-F~gTIr~ 1026 (1156)
+.|++++|..++++.++|.|+||||||||+++|+|+++|++|+|.+ +.+|+||||++.+ +..|+.+
T Consensus 300 ~~l~~~~~~i~~Ge~~~i~G~NGsGKSTLlk~l~Gl~~p~~G~i~~-------------~~~i~~v~Q~~~~~~~~tv~~ 366 (538)
T 1yqt_A 300 FRLEVEPGEIKKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKIEW-------------DLTVAYKPQYIKADYEGTVYE 366 (538)
T ss_dssp EEEEECCEEEETTCEEEEECCTTSSHHHHHHHHHTSSCCSBCCCCC-------------CCCEEEECSSCCCCCSSBHHH
T ss_pred EEEEeCccccCCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEE-------------CceEEEEecCCcCCCCCcHHH
Confidence 5677777777888889999999999999999999999999999985 2369999999976 5679999
Q ss_pred ccCCC--CC-CCHHHHHHHHHHcCCChHHHhhcCCcccc-------ccccccCCCEEEEecCCcCCCHHHHHHHHHHHHH
Q 037346 1027 NLDPL--EE-HADEQIWEALDKCQLGDEVRKKKGKLDSQ-------GRVLLKKSKVLVLDEATASVDTATDNQIQQTLRQ 1096 (1156)
Q Consensus 1027 Nl~~~--~~-~~deei~~al~~~~l~~~i~~lp~gl~s~-------ARALLr~~~ILiLDEaTS~LD~~te~~I~~~l~~ 1096 (1156)
|+... .. ...+.+.++++..++.+.....|..|..+ ||||+++|+||||||||++||..+...|.+.|++
T Consensus 367 ~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSGGe~qrv~lAraL~~~p~lLlLDEPt~~LD~~~~~~i~~~l~~ 446 (538)
T 1yqt_A 367 LLSKIDASKLNSNFYKTELLKPLGIIDLYDREVNELSGGELQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRH 446 (538)
T ss_dssp HHHHHHHHHHTCHHHHHHTTTTTTCGGGTTSBGGGCCHHHHHHHHHHHHHTSCCSEEEEECTTTTCCHHHHHHHHHHHHH
T ss_pred HHHhhhccCCCHHHHHHHHHHHcCChhhhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHH
Confidence 87532 11 12456788999999987766666666544 8999999999999999999999999999999998
Q ss_pred hc--CCceEEEeecCcccccc-cCEEEEEeC--cEEeeecChhHHhc
Q 037346 1097 HF--SDCTVVTIAHRITSVLD-SAMVLLLNH--GLIKEYDSPTKLLE 1138 (1156)
Q Consensus 1097 ~~--~~~TvI~IaHrl~ti~~-~D~I~Vl~~--G~IvE~G~~~eLl~ 1138 (1156)
+. .+.|||+|+|+++.+.. ||||+||++ |++++.|+|++++.
T Consensus 447 l~~~~g~tvi~vsHd~~~~~~~~drv~vl~~~~~~~~~~g~~~~~~~ 493 (538)
T 1yqt_A 447 LMEKNEKTALVVEHDVLMIDYVSDRLMVFEGEPGKYGRALPPMGMRE 493 (538)
T ss_dssp HHHHHTCEEEEECSCHHHHHHHCSEEEEEEEETTTEEEECCCEEHHH
T ss_pred HHHhCCCEEEEEeCCHHHHHHhCCEEEEEeCCcceEeecCCHHHHHh
Confidence 64 38999999999999874 999999996 78888999998875
|
| >3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus} | Back alignment and structure |
|---|
Probab=100.00 E-value=1e-53 Score=535.39 Aligned_cols=187 Identities=22% Similarity=0.303 Sum_probs=127.3
Q ss_pred CCCccccceEEeeCCeEEEEEcCCCCChHHHH---------------------HHHhCCCCCCCc-------EEEEcCe-
Q 037346 372 PNPTLRNINLKVFHGMRVAVCGTVGSGKSSCL---------------------SCILGGVPKESG-------IIRLCGT- 422 (1156)
Q Consensus 372 ~~~~l~~i~l~i~~g~~~~ivG~~GsGKSTll---------------------~~i~g~~~~~~G-------~i~~~g~- 422 (1156)
...+|+|+||+|++||+++|+||||||||||+ +.+.|+..|+.| .|.++|.
T Consensus 30 ~~~~L~~vsl~i~~Ge~~~liGpNGaGKSTLl~~~~~~~~~~~~~~~l~~~~~~~l~~l~~~~~~~i~~~~~~i~~~~~~ 109 (670)
T 3ux8_A 30 RAHNLKNIDVEIPRGKLVVLTGLSGSGKSSLAFDTIYAEGQRRYVESLSAYARQFLGQMEKPDVDAIEGLSPAISIDQKT 109 (670)
T ss_dssp CSTTCCSEEEEEETTSEEEEECSTTSSHHHHHTTTHHHHHHHHHHTC--------------CCCSEEESCCCEEEESSCC
T ss_pred CccceeccEEEECCCCEEEEECCCCCCHHHHhcccccccccccccccchhhhhhhhcccccCCccceeccccceEecCch
Confidence 35689999999999999999999999999998 888888888844 4555542
Q ss_pred --------EEEEecCCcC--------------------CCccHHHHhhcCCCCC--H--H-----HHHH------HHHHh
Q 037346 423 --------KAYVAQSPWI--------------------QSGKIEENILFGKEMD--R--E-----RYER------VLEAC 459 (1156)
Q Consensus 423 --------~~~v~Q~~~~--------------------~~~ti~eni~~~~~~~--~--~-----~~~~------~~~~~ 459 (1156)
++|++|.+.+ ...|++||+.+..... + . ..++ .++.+
T Consensus 110 ~~~~~~~~ig~v~q~~~~~~~~~~~~~~~~~~~~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 189 (670)
T 3ux8_A 110 TSRNPRSTVGTVTEIYDYLRLLFARIGRLVGGKHIGEVTAMSVTEALAFFDGLELTEKEAQIARLILREIRDRLGFLQNV 189 (670)
T ss_dssp -----CCBHHHHTTCC-------------------------CC--------------------------CHHHHHHHHHT
T ss_pred hhccchhceeeeechhhhHHHHHhhhcccccccccccccCCcHHHHHHHhhccccchhhhHHHHHHHHHHHHHHHHHHHc
Confidence 3455554432 2358999998743211 0 0 0011 12223
Q ss_pred CCchhhhhCCCCCccccccCCCCCCHHHHHHHHHHHhhccCCC--eeeeeCCCCCcCHHHHHHHHHHHHh--cCCCEEEE
Q 037346 460 SLKKDLEVLPFGDQTIIGERGINLSGGQKQRIQIARPLYQDAD--IFLLDDPFSPVDDHTGAHLFKFCWV--SSSKTVIY 535 (1156)
Q Consensus 460 ~l~~~~~~~~~g~~t~v~~~g~~LSgGqkqRi~lAral~~~~~--illlDep~s~lD~~~~~~i~~~~~~--~~~~tvi~ 535 (1156)
+|.+. ...+...+|||||||||+|||||+.+|+ +|||||||++||+....++++.+.. .+|.|+|+
T Consensus 190 gL~~~----------~~~~~~~~LSGGe~QRv~iArAL~~~p~~~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~g~tvi~ 259 (670)
T 3ux8_A 190 GLDYL----------TLSRSAGTLSGGEAQRIRLATQIGSRLTGVLYVLDEPSIGLHQRDNDRLIATLKSMRDLGNTLIV 259 (670)
T ss_dssp TCTTC----------CTTCBGGGSCHHHHHHHHHHHHHHTCCCSCEEEEECTTTTCCGGGHHHHHHHHHHHHHTTCEEEE
T ss_pred CCchh----------hhcCCcccCCHHHHHHHHHHHHHhhCCCCCEEEEECCccCCCHHHHHHHHHHHHHHHHcCCEEEE
Confidence 33211 1234567899999999999999999998 9999999999999999999876643 46899999
Q ss_pred EccCCCccccCCEEEEE------eCCeEEEccChHHHHh
Q 037346 536 ATHQVEFLPAADLILVI------KDGKITQAGKYSDILN 568 (1156)
Q Consensus 536 vtH~~~~~~~~d~i~~l------~~G~i~~~g~~~~l~~ 568 (1156)
||||++.+..||+|++| ++|++++.|+++++.+
T Consensus 260 vtHd~~~~~~~d~ii~l~~g~~~~~G~i~~~g~~~~~~~ 298 (670)
T 3ux8_A 260 VEHDEDTMLAADYLIDIGPGAGIHGGEVVAAGTPEEVMN 298 (670)
T ss_dssp ECCCHHHHHHCSEEEEECSSSGGGCCSEEEEECHHHHHT
T ss_pred EeCCHHHHhhCCEEEEecccccccCCEEEEecCHHHHhc
Confidence 99999988789999999 8999999999988764
|
| >3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=7.6e-53 Score=471.51 Aligned_cols=261 Identities=27% Similarity=0.406 Sum_probs=227.1
Q ss_pred HHHHHHHHHHHHHHHHHhccCCCCccccccCCCCCCCccEEEeeeEEEeCCCCCCCccccceEEeeCCeEEEEEcCCCCC
Q 037346 319 ISMMIQAKVPLDRIASFLCLEGLQTDVLEKMPRGNSDTAIEIIDGSFSWDFSSPNPTLRNINLKVFHGMRVAVCGTVGSG 398 (1156)
Q Consensus 319 ~~~~~~a~~s~~Ri~~fl~~~~~~~~~~~~~~~~~~~~~i~~~~~~f~~~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsG 398 (1156)
...+.++.++++|+.++++.++.........+.....+.|+++|++|+|+. +.++|+|+||+|++||+++|+||||||
T Consensus 15 ~~~~~~~~~~~~ri~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~vs~~y~~--~~~vL~~isl~i~~Ge~vaivG~sGsG 92 (306)
T 3nh6_A 15 VPRGSHMFIDMENMFDLLKEETEVKDLPGAGPLRFQKGRIEFENVHFSYAD--GRETLQDVSFTVMPGQTLALVGPSGAG 92 (306)
T ss_dssp ----CCTTCCHHHHHHHHHHHHSCCCCTTCBCCCCSSCCEEEEEEEEESST--TCEEEEEEEEEECTTCEEEEESSSCHH
T ss_pred chhHHHHHHHHHHHHHHHhCCccccccccccccCCCCCeEEEEEEEEEcCC--CCceeeeeeEEEcCCCEEEEECCCCch
Confidence 456777889999999999764321111111111123457999999999973 457999999999999999999999999
Q ss_pred hHHHHHHHhCCCCCCCcEEEEcCe-------------EEEEecCCcCCCccHHHHhhcCCC-CCHHHHHHHHHHhCCchh
Q 037346 399 KSSCLSCILGGVPKESGIIRLCGT-------------KAYVAQSPWIQSGKIEENILFGKE-MDRERYERVLEACSLKKD 464 (1156)
Q Consensus 399 KSTll~~i~g~~~~~~G~i~~~g~-------------~~~v~Q~~~~~~~ti~eni~~~~~-~~~~~~~~~~~~~~l~~~ 464 (1156)
||||+++|+|+++|++|+|.++|. ++||||+|++|++||+|||.+|.. ...++.+++++.+++.++
T Consensus 93 KSTLl~ll~gl~~p~~G~I~i~G~~i~~~~~~~~r~~i~~v~Q~~~lf~~Tv~eNi~~~~~~~~~~~~~~~~~~~~l~~~ 172 (306)
T 3nh6_A 93 KSTILRLLFRFYDISSGCIRIDGQDISQVTQASLRSHIGVVPQDTVLFNDTIADNIRYGRVTAGNDEVEAAAQAAGIHDA 172 (306)
T ss_dssp HHHHHHHHTTSSCCSEEEEEETTEETTSBCHHHHHHTEEEECSSCCCCSEEHHHHHHTTSTTCCHHHHHHHHHHHTCHHH
T ss_pred HHHHHHHHHcCCCCCCcEEEECCEEcccCCHHHHhcceEEEecCCccCcccHHHHHHhhcccCCHHHHHHHHHHhCcHHH
Confidence 999999999999999999999994 799999999999999999999974 567888999999999999
Q ss_pred hhhCCCCCccccccCCCCCCHHHHHHHHHHHhhccCCCeeeeeCCCCCcCHHHHHHHHHHHHh-cCCCEEEEEccCCCcc
Q 037346 465 LEVLPFGDQTIIGERGINLSGGQKQRIQIARPLYQDADIFLLDDPFSPVDDHTGAHLFKFCWV-SSSKTVIYATHQVEFL 543 (1156)
Q Consensus 465 ~~~~~~g~~t~v~~~g~~LSgGqkqRi~lAral~~~~~illlDep~s~lD~~~~~~i~~~~~~-~~~~tvi~vtH~~~~~ 543 (1156)
+..+|.|++|.+|++|.+|||||||||+|||||+++|+|||||||||+||+.++..+.+.+.. .+++|+|+|||+++.+
T Consensus 173 i~~lp~gl~t~~~~~g~~LSGGqrQRvaiARAL~~~p~iLlLDEPts~LD~~~~~~i~~~l~~l~~~~Tvi~itH~l~~~ 252 (306)
T 3nh6_A 173 IMAFPEGYRTQVGERGLKLSGGEKQRVAIARTILKAPGIILLDEATSALDTSNERAIQASLAKVCANRTTIVVAHRLSTV 252 (306)
T ss_dssp HHHSTTGGGCEESTTSBCCCHHHHHHHHHHHHHHHCCSEEEEECCSSCCCHHHHHHHHHHHHHHHTTSEEEEECCSHHHH
T ss_pred HHhccchhhhHhcCCcCCCCHHHHHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHcCCCEEEEEEcChHHH
Confidence 999999999999999999999999999999999999999999999999999999999876644 4689999999999999
Q ss_pred ccCCEEEEEeCCeEEEccChHHHHhcCcchHHHHHhhh
Q 037346 544 PAADLILVIKDGKITQAGKYSDILNSGTDFMELVGAHK 581 (1156)
Q Consensus 544 ~~~d~i~~l~~G~i~~~g~~~~l~~~~~~~~~~~~~~~ 581 (1156)
..||+|++|++|+|++.|+++++++..+.|.+++..+.
T Consensus 253 ~~aD~i~vl~~G~iv~~G~~~el~~~~~~y~~l~~~q~ 290 (306)
T 3nh6_A 253 VNADQILVIKDGCIVERGRHEALLSRGGVYADMWQLQQ 290 (306)
T ss_dssp HTCSEEEEEETTEEEEEECHHHHHHHTSHHHHHHHHHH
T ss_pred HcCCEEEEEECCEEEEECCHHHHHhcChHHHHHHHHHH
Confidence 88999999999999999999999998888888876554
|
| >3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus} | Back alignment and structure |
|---|
Probab=100.00 E-value=6.8e-53 Score=508.78 Aligned_cols=179 Identities=16% Similarity=0.195 Sum_probs=149.7
Q ss_pred eEEEEEEEEEEcCCCCceeeCCCCCCHHHHHHHHhhcccCCCceEEEcCeeCCCCChHHHhhcCeeecccccc-ccccch
Q 037346 947 EVNIRHLQVRYAPNLPLVLRGRTGSGKSTLIQTLFRIVESTAGHILIDGKDISLIGLHDLRTRLSIIPQDPTM-FEGTTR 1025 (1156)
Q Consensus 947 ~I~~~~Vsf~Y~~~~~~vL~G~SGsGKSTL~~lL~rl~~p~~G~I~idG~di~~i~~~~LR~~i~~VpQdp~L-F~gTIr 1025 (1156)
.+.++++++..++++.++|.|+||||||||+++|+|+++|++|+|.++| +.++++||++.. |..|++
T Consensus 281 ~~~l~~~~~~i~~Gei~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~~------------~~i~~~~q~~~~~~~~tv~ 348 (538)
T 3ozx_A 281 DFQLVVDNGEAKEGEIIGILGPNGIGKTTFARILVGEITADEGSVTPEK------------QILSYKPQRIFPNYDGTVQ 348 (538)
T ss_dssp TEEEEECCEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCSBCCEESSC------------CCEEEECSSCCCCCSSBHH
T ss_pred CEEEEeccceECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECC------------eeeEeechhcccccCCCHH
Confidence 3567777777788998999999999999999999999999999999875 358999999864 578999
Q ss_pred hccCCCC----CCCHHHHHHHHHHcCCChHHHhhcCCcccc-------ccccccCCCEEEEecCCcCCCHHHHHHHHHHH
Q 037346 1026 SNLDPLE----EHADEQIWEALDKCQLGDEVRKKKGKLDSQ-------GRVLLKKSKVLVLDEATASVDTATDNQIQQTL 1094 (1156)
Q Consensus 1026 ~Nl~~~~----~~~deei~~al~~~~l~~~i~~lp~gl~s~-------ARALLr~~~ILiLDEaTS~LD~~te~~I~~~l 1094 (1156)
+|+.... ....+.+.++++.+++.+.....|..|.-+ ||||+++|+||||||||++||+.+...|.+.|
T Consensus 349 ~~l~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSGGq~QRv~iAraL~~~p~lLlLDEPT~gLD~~~~~~i~~~l 428 (538)
T 3ozx_A 349 QYLENASKDALSTSSWFFEEVTKRLNLHRLLESNVNDLSGGELQKLYIAATLAKEADLYVLDQPSSYLDVEERYIVAKAI 428 (538)
T ss_dssp HHHHHHCSSTTCTTSHHHHHTTTTTTGGGCTTSBGGGCCHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHH
T ss_pred HHHHHhhhhccchhHHHHHHHHHHcCCHHHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHH
Confidence 9985311 122355788899999988777777666544 89999999999999999999999999999999
Q ss_pred HHhc--CCceEEEeecCcccccc-cCEEEEEeC--cEEeeecChhHHh
Q 037346 1095 RQHF--SDCTVVTIAHRITSVLD-SAMVLLLNH--GLIKEYDSPTKLL 1137 (1156)
Q Consensus 1095 ~~~~--~~~TvI~IaHrl~ti~~-~D~I~Vl~~--G~IvE~G~~~eLl 1137 (1156)
+++. .++|||+|+|+++.+.. ||||+||++ |.+...++|.++.
T Consensus 429 ~~l~~~~g~tvi~vsHdl~~~~~~aDri~vl~~~~~~~~~~~~~~~~~ 476 (538)
T 3ozx_A 429 KRVTRERKAVTFIIDHDLSIHDYIADRIIVFKGEPEKAGLATSPVTLK 476 (538)
T ss_dssp HHHHHHTTCEEEEECSCHHHHHHHCSEEEEEEEETTTEEEECCCEEHH
T ss_pred HHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEeCCcceeccCCChHHHH
Confidence 8874 47899999999999876 999999986 5566777776654
|
| >3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.8e-52 Score=508.25 Aligned_cols=178 Identities=19% Similarity=0.243 Sum_probs=148.5
Q ss_pred EEEEEEEEEcCC-----CCceeeCCCCCCHHHHHHHHhhcccCCCceEEEcCeeCCCCChHHHhhcCeeeccccc-cccc
Q 037346 949 NIRHLQVRYAPN-----LPLVLRGRTGSGKSTLIQTLFRIVESTAGHILIDGKDISLIGLHDLRTRLSIIPQDPT-MFEG 1022 (1156)
Q Consensus 949 ~~~~Vsf~Y~~~-----~~~vL~G~SGsGKSTL~~lL~rl~~p~~G~I~idG~di~~i~~~~LR~~i~~VpQdp~-LF~g 1022 (1156)
.++|++|...++ +.++|.|+||||||||+++|+|+.+|++|+. +. +..++++||++. .|.+
T Consensus 362 ~l~~vsl~v~~G~~~~GEiv~iiG~NGsGKSTLlk~l~Gl~~p~~G~~------~~-------~~~i~~~~q~~~~~~~~ 428 (608)
T 3j16_B 362 TQGDFVLNVEEGEFSDSEILVMMGENGTGKTTLIKLLAGALKPDEGQD------IP-------KLNVSMKPQKIAPKFPG 428 (608)
T ss_dssp ECSSCEEEECCEECCTTCEEEEESCTTSSHHHHHHHHHTSSCCSBCCC------CC-------SCCEEEECSSCCCCCCS
T ss_pred ccCceEEEEecCccccceEEEEECCCCCcHHHHHHHHhcCCCCCCCcC------cc-------CCcEEEecccccccCCc
Confidence 456667776655 5578999999999999999999999999972 21 346999999975 5788
Q ss_pred cchhccCC--CC-CCCHHHHHHHHHHcCCChHHHhhcCCcccc-------ccccccCCCEEEEecCCcCCCHHHHHHHHH
Q 037346 1023 TTRSNLDP--LE-EHADEQIWEALDKCQLGDEVRKKKGKLDSQ-------GRVLLKKSKVLVLDEATASVDTATDNQIQQ 1092 (1156)
Q Consensus 1023 TIr~Nl~~--~~-~~~deei~~al~~~~l~~~i~~lp~gl~s~-------ARALLr~~~ILiLDEaTS~LD~~te~~I~~ 1092 (1156)
|+++|+.. .. ....+...++++..++.+.....|..|.-+ ||||+.+|+||||||||++||+.+...|.+
T Consensus 429 tv~e~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~LSGGqkQRv~iAraL~~~p~lLlLDEPT~gLD~~~~~~i~~ 508 (608)
T 3j16_B 429 TVRQLFFKKIRGQFLNPQFQTDVVKPLRIDDIIDQEVQHLSGGELQRVAIVLALGIPADIYLIDEPSAYLDSEQRIICSK 508 (608)
T ss_dssp BHHHHHHHHCSSTTTSHHHHHHTHHHHTSTTTSSSBSSSCCHHHHHHHHHHHHTTSCCSEEEECCTTTTCCHHHHHHHHH
T ss_pred cHHHHHHHHhhcccccHHHHHHHHHHcCChhhhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEECCCCCCCHHHHHHHHH
Confidence 99998732 11 223566778999999988877777777644 899999999999999999999999999999
Q ss_pred HHHHhc--CCceEEEeecCcccccc-cCEEEEEeC--cEEeeecChhHHhcC
Q 037346 1093 TLRQHF--SDCTVVTIAHRITSVLD-SAMVLLLNH--GLIKEYDSPTKLLEN 1139 (1156)
Q Consensus 1093 ~l~~~~--~~~TvI~IaHrl~ti~~-~D~I~Vl~~--G~IvE~G~~~eLl~~ 1139 (1156)
.|+++. .++|||+|+|+++.+.. ||||+||++ |+++..|+|++++..
T Consensus 509 ll~~l~~~~g~tviivtHdl~~~~~~aDrvivl~~~~g~~~~~g~p~~~~~~ 560 (608)
T 3j16_B 509 VIRRFILHNKKTAFIVEHDFIMATYLADKVIVFEGIPSKNAHARAPESLLTG 560 (608)
T ss_dssp HHHHHHHHHTCEEEEECSCHHHHHHHCSEEEECEEETTTEEECCCCEEHHHH
T ss_pred HHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEeCCCCeEEecCChHHHhhh
Confidence 998864 48999999999999875 999999997 899999999999964
|
| >3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=5.7e-49 Score=440.17 Aligned_cols=243 Identities=26% Similarity=0.425 Sum_probs=210.0
Q ss_pred HHHHHHhHHHHHHHHhhcCCCCCcccccCCCCCCCCCCCCeEEEEEEEEEEcCC--------------CCceeeCCCCCC
Q 037346 907 KNLERKIISVERILQCACIPSEPALVIEATKPNNSRPSHGEVNIRHLQVRYAPN--------------LPLVLRGRTGSG 972 (1156)
Q Consensus 907 ~~~~~~~~s~~Ri~~~~~~~~e~~~~~~~~~~~~~~p~~g~I~~~~Vsf~Y~~~--------------~~~vL~G~SGsG 972 (1156)
.+++..+++++|+.++++.+++... .......++..|.|+|+||+|+|+++ +.++|.||||||
T Consensus 16 ~~~~~~~~~~~ri~~~l~~~~~~~~---~~~~~~~~~~~~~i~~~~vs~~y~~~~~vL~~isl~i~~Ge~vaivG~sGsG 92 (306)
T 3nh6_A 16 PRGSHMFIDMENMFDLLKEETEVKD---LPGAGPLRFQKGRIEFENVHFSYADGRETLQDVSFTVMPGQTLALVGPSGAG 92 (306)
T ss_dssp ---CCTTCCHHHHHHHHHHHHSCCC---CTTCBCCCCSSCCEEEEEEEEESSTTCEEEEEEEEEECTTCEEEEESSSCHH
T ss_pred hhHHHHHHHHHHHHHHHhCCccccc---cccccccCCCCCeEEEEEEEEEcCCCCceeeeeeEEEcCCCEEEEECCCCch
Confidence 4556677888999988764433211 01111123346789999999999533 334566999999
Q ss_pred HHHHHHHHhhcccCCCceEEEcCeeCCCCChHHHhhcCeeeccccccccccchhccCCCC-CCCHHHHHHHHHHcCCChH
Q 037346 973 KSTLIQTLFRIVESTAGHILIDGKDISLIGLHDLRTRLSIIPQDPTMFEGTTRSNLDPLE-EHADEQIWEALDKCQLGDE 1051 (1156)
Q Consensus 973 KSTL~~lL~rl~~p~~G~I~idG~di~~i~~~~LR~~i~~VpQdp~LF~gTIr~Nl~~~~-~~~deei~~al~~~~l~~~ 1051 (1156)
||||+++|+|+|+|++|+|.+||.|+.+++.+.+|++|+||||+|.+|++||+|||.++. ..++++++++++.++++++
T Consensus 93 KSTLl~ll~gl~~p~~G~I~i~G~~i~~~~~~~~r~~i~~v~Q~~~lf~~Tv~eNi~~~~~~~~~~~~~~~~~~~~l~~~ 172 (306)
T 3nh6_A 93 KSTILRLLFRFYDISSGCIRIDGQDISQVTQASLRSHIGVVPQDTVLFNDTIADNIRYGRVTAGNDEVEAAAQAAGIHDA 172 (306)
T ss_dssp HHHHHHHHTTSSCCSEEEEEETTEETTSBCHHHHHHTEEEECSSCCCCSEEHHHHHHTTSTTCCHHHHHHHHHHHTCHHH
T ss_pred HHHHHHHHHcCCCCCCcEEEECCEEcccCCHHHHhcceEEEecCCccCcccHHHHHHhhcccCCHHHHHHHHHHhCcHHH
Confidence 999999999999999999999999999999999999999999999999999999998765 4568999999999999999
Q ss_pred HHhhcCCcccc------------------ccccccCCCEEEEecCCcCCCHHHHHHHHHHHHHhcCCceEEEeecCcccc
Q 037346 1052 VRKKKGKLDSQ------------------GRVLLKKSKVLVLDEATASVDTATDNQIQQTLRQHFSDCTVVTIAHRITSV 1113 (1156)
Q Consensus 1052 i~~lp~gl~s~------------------ARALLr~~~ILiLDEaTS~LD~~te~~I~~~l~~~~~~~TvI~IaHrl~ti 1113 (1156)
+..+|+||++. ||||+++|+|||||||||+||+++++.|++.|++..+++|+|+||||++++
T Consensus 173 i~~lp~gl~t~~~~~g~~LSGGqrQRvaiARAL~~~p~iLlLDEPts~LD~~~~~~i~~~l~~l~~~~Tvi~itH~l~~~ 252 (306)
T 3nh6_A 173 IMAFPEGYRTQVGERGLKLSGGEKQRVAIARTILKAPGIILLDEATSALDTSNERAIQASLAKVCANRTTIVVAHRLSTV 252 (306)
T ss_dssp HHHSTTGGGCEESTTSBCCCHHHHHHHHHHHHHHHCCSEEEEECCSSCCCHHHHHHHHHHHHHHHTTSEEEEECCSHHHH
T ss_pred HHhccchhhhHhcCCcCCCCHHHHHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHcCCCEEEEEEcChHHH
Confidence 99999998854 899999999999999999999999999999999988899999999999999
Q ss_pred cccCEEEEEeCcEEeeecChhHHhcCCCChHHHHHHHHhc
Q 037346 1114 LDSAMVLLLNHGLIKEYDSPTKLLENKSSSFAQLVAEYTS 1153 (1156)
Q Consensus 1114 ~~~D~I~Vl~~G~IvE~G~~~eLl~~~~g~f~~l~~~~~~ 1153 (1156)
..||+|+||++|+|+|.|+|++|+++ +|.|++|++.+..
T Consensus 253 ~~aD~i~vl~~G~iv~~G~~~el~~~-~~~y~~l~~~q~~ 291 (306)
T 3nh6_A 253 VNADQILVIKDGCIVERGRHEALLSR-GGVYADMWQLQQG 291 (306)
T ss_dssp HTCSEEEEEETTEEEEEECHHHHHHH-TSHHHHHHHHHHC
T ss_pred HcCCEEEEEECCEEEEECCHHHHHhc-ChHHHHHHHHHHh
Confidence 99999999999999999999999975 7999999987653
|
| >2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A | Back alignment and structure |
|---|
Probab=100.00 E-value=9.3e-47 Score=408.30 Aligned_cols=218 Identities=38% Similarity=0.669 Sum_probs=197.2
Q ss_pred ccEEEeeeEEEeCCCCCCCccccceEEeeCCeEEEEEcCCCCChHHHHHHHhCCCCCCCcEEEEcCeEEEEecCCcCCCc
Q 037346 356 TAIEIIDGSFSWDFSSPNPTLRNINLKVFHGMRVAVCGTVGSGKSSCLSCILGGVPKESGIIRLCGTKAYVAQSPWIQSG 435 (1156)
Q Consensus 356 ~~i~~~~~~f~~~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKSTll~~i~g~~~~~~G~i~~~g~~~~v~Q~~~~~~~ 435 (1156)
..++++|++|+|+. +++++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++|+||+|++++.
T Consensus 5 ~~l~~~~l~~~y~~-~~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~i~~v~q~~~~~~~ 83 (229)
T 2pze_A 5 TEVVMENVTAFWEE-GGTPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSGRISFCSQFSWIMPG 83 (229)
T ss_dssp EEEEEEEEEECSST-TSCCSEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEECSCEEEECSSCCCCSB
T ss_pred ceEEEEEEEEEeCC-CCceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCcCCccEEEECCEEEEEecCCcccCC
Confidence 36999999999963 24679999999999999999999999999999999999999999999999999999999999989
Q ss_pred cHHHHhhcCCCCCHHHHHHHHHHhCCchhhhhCCCCCccccccCCCCCCHHHHHHHHHHHhhccCCCeeeeeCCCCCcCH
Q 037346 436 KIEENILFGKEMDRERYERVLEACSLKKDLEVLPFGDQTIIGERGINLSGGQKQRIQIARPLYQDADIFLLDDPFSPVDD 515 (1156)
Q Consensus 436 ti~eni~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~t~v~~~g~~LSgGqkqRi~lAral~~~~~illlDep~s~lD~ 515 (1156)
||+||+.++......++.++++.+++.+.++.+|.++++.+++++.+||||||||++|||||+++|+++||||||++||+
T Consensus 84 tv~enl~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LSgGqkqrv~lAral~~~p~lllLDEPts~LD~ 163 (229)
T 2pze_A 84 TIKENIIFGVSYDEYRYRSVIKACQLEEDISKFAEKDNIVLGEGGITLSGGQRARISLARAVYKDADLYLLDSPFGYLDV 163 (229)
T ss_dssp CHHHHHHTTSCCCHHHHHHHHHHTTCHHHHTTSTTGGGSCBCTTCTTSCHHHHHHHHHHHHHHSCCSEEEEESTTTTSCH
T ss_pred CHHHHhhccCCcChHHHHHHHHHhCcHHHHHhCcccccccccCCCCcCCHHHHHHHHHHHHHhcCCCEEEEECcccCCCH
Confidence 99999999876666667788888999988999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHH-h-cCCCEEEEEccCCCccccCCEEEEEeCCeEEEccChHHHHhcCcchH
Q 037346 516 HTGAHLFKFCW-V-SSSKTVIYATHQVEFLPAADLILVIKDGKITQAGKYSDILNSGTDFM 574 (1156)
Q Consensus 516 ~~~~~i~~~~~-~-~~~~tvi~vtH~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~~~~~~ 574 (1156)
.+++.+++.++ . .+++|+|++||+++.+..||+|++|++|++++.|+++++.+....+.
T Consensus 164 ~~~~~i~~~l~~~~~~~~tvi~vtH~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~~~~~~ 224 (229)
T 2pze_A 164 LTEKEIFESCVCKLMANKTRILVTSKMEHLKKADKILILHEGSSYFYGTFSELQNLQPDFS 224 (229)
T ss_dssp HHHHHHHHHCCCCCTTTSEEEEECCCHHHHHHCSEEEEEETTEEEEEECHHHHHTC--CHH
T ss_pred HHHHHHHHHHHHHhhCCCEEEEEcCChHHHHhCCEEEEEECCEEEEECCHHHHHhcChHHH
Confidence 99999988643 2 35789999999998887799999999999999999999876544443
|
| >2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.6e-46 Score=408.31 Aligned_cols=221 Identities=45% Similarity=0.800 Sum_probs=200.7
Q ss_pred cEEEeeeEEEeCCCCCCCccccceEEeeCCeEEEEEcCCCCChHHHHHHHhCCCCCCCcEEEEcCeEEEEecCCcCCCcc
Q 037346 357 AIEIIDGSFSWDFSSPNPTLRNINLKVFHGMRVAVCGTVGSGKSSCLSCILGGVPKESGIIRLCGTKAYVAQSPWIQSGK 436 (1156)
Q Consensus 357 ~i~~~~~~f~~~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKSTll~~i~g~~~~~~G~i~~~g~~~~v~Q~~~~~~~t 436 (1156)
.++++|++|+|+. .++++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++|+||+|++++.|
T Consensus 3 ~l~~~~l~~~y~~-~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~i~~v~Q~~~~~~~t 81 (237)
T 2cbz_A 3 SITVRNATFTWAR-SDPPTLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDKVEGHVAIKGSVAYVPQQAWIQNDS 81 (237)
T ss_dssp CEEEEEEEEESCT-TSCCSEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTCSEEEEEEEEECSCEEEECSSCCCCSEE
T ss_pred eEEEEEEEEEeCC-CCCceeeeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEEEEcCCCcCCCcC
Confidence 4899999999963 235799999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhcCCCCCHHHHHHHHHHhCCchhhhhCCCCCccccccCCCCCCHHHHHHHHHHHhhccCCCeeeeeCCCCCcCHH
Q 037346 437 IEENILFGKEMDRERYERVLEACSLKKDLEVLPFGDQTIIGERGINLSGGQKQRIQIARPLYQDADIFLLDDPFSPVDDH 516 (1156)
Q Consensus 437 i~eni~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~t~v~~~g~~LSgGqkqRi~lAral~~~~~illlDep~s~lD~~ 516 (1156)
++|||.++.....++.+++.+.+++.+.+..+|.|++|.+++++.+|||||||||+|||||+.+|+++||||||++||+.
T Consensus 82 v~enl~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LSgGqkqRv~lAraL~~~p~lllLDEPts~LD~~ 161 (237)
T 2cbz_A 82 LRENILFGCQLEEPYYRSVIQACALLPDLEILPSGDRTEIGEKGVNLSGGQKQRVSLARAVYSNADIYLFDDPLSAVDAH 161 (237)
T ss_dssp HHHHHHTTSCCCTTHHHHHHHHTTCHHHHTTSTTGGGSEESTTSBCCCHHHHHHHHHHHHHHHCCSEEEEESTTTTSCHH
T ss_pred HHHHhhCccccCHHHHHHHHHHHhhHHHHHhccccccccccCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCcccccCHH
Confidence 99999998765556677888889998888888999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHH---h-cCCCEEEEEccCCCccccCCEEEEEeCCeEEEccChHHHHhcCcchHHHHH
Q 037346 517 TGAHLFKFCW---V-SSSKTVIYATHQVEFLPAADLILVIKDGKITQAGKYSDILNSGTDFMELVG 578 (1156)
Q Consensus 517 ~~~~i~~~~~---~-~~~~tvi~vtH~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~~~~~~~~~~ 578 (1156)
+++.+++.+. . .+|+|+|++||+++.+..||+|++|++|++++.|+++++.+....|.+++.
T Consensus 162 ~~~~i~~~l~~~~~~~~~~tviivtH~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~~~~~~~~~~ 227 (237)
T 2cbz_A 162 VGKHIFENVIGPKGMLKNKTRILVTHSMSYLPQVDVIIVMSGGKISEMGSYQELLARDGAFAEFLR 227 (237)
T ss_dssp HHHHHHHHTTSTTSTTTTSEEEEECSCSTTGGGSSEEEEEETTEEEEEECHHHHHHHTSHHHHHHH
T ss_pred HHHHHHHHHHHHHhhcCCCEEEEEecChHHHHhCCEEEEEeCCEEEEeCCHHHHhhccHHHHHHHH
Confidence 9999988763 2 358999999999998878999999999999999999999877666666553
|
| >2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.9e-45 Score=402.16 Aligned_cols=222 Identities=28% Similarity=0.389 Sum_probs=200.3
Q ss_pred ccEEEeeeEEEeCCCCCCCccccceEEeeCCeEEEEEcCCCCChHHHHHHHhCCCCCCCcEEEEcCe-------------
Q 037346 356 TAIEIIDGSFSWDFSSPNPTLRNINLKVFHGMRVAVCGTVGSGKSSCLSCILGGVPKESGIIRLCGT------------- 422 (1156)
Q Consensus 356 ~~i~~~~~~f~~~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKSTll~~i~g~~~~~~G~i~~~g~------------- 422 (1156)
..|+++|++|+|+. +++++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.
T Consensus 6 ~~~~~~~l~~~y~~-~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~I~i~g~~~~~~~~~~~~~~ 84 (247)
T 2ff7_A 6 HDITFRNIRFRYKP-DSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVLIDGHDLALADPNWLRRQ 84 (247)
T ss_dssp EEEEEEEEEEESST-TSCEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEETTTSCHHHHHHH
T ss_pred CceeEEEEEEEeCC-CCcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEhhhCCHHHHHhc
Confidence 35999999999942 1357999999999999999999999999999999999999999999999983
Q ss_pred EEEEecCCcCCCccHHHHhhcCCC-CCHHHHHHHHHHhCCchhhhhCCCCCccccccCCCCCCHHHHHHHHHHHhhccCC
Q 037346 423 KAYVAQSPWIQSGKIEENILFGKE-MDRERYERVLEACSLKKDLEVLPFGDQTIIGERGINLSGGQKQRIQIARPLYQDA 501 (1156)
Q Consensus 423 ~~~v~Q~~~~~~~ti~eni~~~~~-~~~~~~~~~~~~~~l~~~~~~~~~g~~t~v~~~g~~LSgGqkqRi~lAral~~~~ 501 (1156)
++|+||+|.+++.||+||+.++.+ .+.++..++++.+++.+.++.+|.|+++.+++++.+|||||||||+|||||+.+|
T Consensus 85 i~~v~Q~~~l~~~tv~enl~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~gl~~~~~~~~~~LSgGq~qRv~iAraL~~~p 164 (247)
T 2ff7_A 85 VGVVLQDNVLLNRSIIDNISLANPGMSVEKVIYAAKLAGAHDFISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNP 164 (247)
T ss_dssp EEEECSSCCCTTSBHHHHHTTTCTTCCHHHHHHHHHHHTCHHHHHTSTTGGGCBCSTTTTCCCHHHHHHHHHHHHHTTCC
T ss_pred EEEEeCCCccccccHHHHHhccCCCCCHHHHHHHHHHhChHHHHHhCcchhhhhhhCCCCCCCHHHHHHHHHHHHHhcCC
Confidence 799999999998999999999753 4567788899999999999999999999999999999999999999999999999
Q ss_pred CeeeeeCCCCCcCHHHHHHHHHHHHh-cCCCEEEEEccCCCccccCCEEEEEeCCeEEEccChHHHHhc-CcchHHHHH
Q 037346 502 DIFLLDDPFSPVDDHTGAHLFKFCWV-SSSKTVIYATHQVEFLPAADLILVIKDGKITQAGKYSDILNS-GTDFMELVG 578 (1156)
Q Consensus 502 ~illlDep~s~lD~~~~~~i~~~~~~-~~~~tvi~vtH~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~-~~~~~~~~~ 578 (1156)
+++||||||++||+.+++.+.+.+.. .+|+|+|+|||+++.+..||+|++|++|++++.|+++++... ...|..++.
T Consensus 165 ~lllLDEPts~LD~~~~~~i~~~l~~~~~g~tviivtH~~~~~~~~d~v~~l~~G~i~~~g~~~~l~~~~~~~~~~l~~ 243 (247)
T 2ff7_A 165 KILIFDEATSALDYESEHVIMRNMHKICKGRTVIIIAHRLSTVKNADRIIVMEKGKIVEQGKHKELLSEPESLYSYLYQ 243 (247)
T ss_dssp SEEEECCCCSCCCHHHHHHHHHHHHHHHTTSEEEEECSSGGGGTTSSEEEEEETTEEEEEECHHHHHTSTTCHHHHHHH
T ss_pred CEEEEeCCcccCCHHHHHHHHHHHHHHcCCCEEEEEeCCHHHHHhCCEEEEEECCEEEEECCHHHHHhCCchHHHHHHH
Confidence 99999999999999999998876644 468999999999998878999999999999999999999866 455655543
|
| >2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str} | Back alignment and structure |
|---|
Probab=100.00 E-value=5.9e-45 Score=401.35 Aligned_cols=223 Identities=30% Similarity=0.448 Sum_probs=199.6
Q ss_pred ccEEEeeeEEEeCCCCCCCccccceEEeeCCeEEEEEcCCCCChHHHHHHHhCCCCCCCcEEEEcCe-------------
Q 037346 356 TAIEIIDGSFSWDFSSPNPTLRNINLKVFHGMRVAVCGTVGSGKSSCLSCILGGVPKESGIIRLCGT------------- 422 (1156)
Q Consensus 356 ~~i~~~~~~f~~~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKSTll~~i~g~~~~~~G~i~~~g~------------- 422 (1156)
..|+++|++|+|+....+++|+|+||+|++|++++|+||||||||||+++|+|+++| +|+|.++|.
T Consensus 16 ~~l~i~~l~~~y~~~~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~-~G~I~i~g~~i~~~~~~~~~~~ 94 (260)
T 2ghi_A 16 VNIEFSDVNFSYPKQTNHRTLKSINFFIPSGTTCALVGHTGSGKSTIAKLLYRFYDA-EGDIKIGGKNVNKYNRNSIRSI 94 (260)
T ss_dssp CCEEEEEEEECCTTCCSSCSEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCC-EEEEEETTEEGGGBCHHHHHTT
T ss_pred CeEEEEEEEEEeCCCCcCceeEeeEEEECCCCEEEEECCCCCCHHHHHHHHhccCCC-CeEEEECCEEhhhcCHHHHhcc
Confidence 359999999999643225799999999999999999999999999999999999997 899999983
Q ss_pred EEEEecCCcCCCccHHHHhhcCCC-CCHHHHHHHHHHhCCchhhhhCCCCCccccccCCCCCCHHHHHHHHHHHhhccCC
Q 037346 423 KAYVAQSPWIQSGKIEENILFGKE-MDRERYERVLEACSLKKDLEVLPFGDQTIIGERGINLSGGQKQRIQIARPLYQDA 501 (1156)
Q Consensus 423 ~~~v~Q~~~~~~~ti~eni~~~~~-~~~~~~~~~~~~~~l~~~~~~~~~g~~t~v~~~g~~LSgGqkqRi~lAral~~~~ 501 (1156)
++|++|+|.+|+.||+||+.++.. .+++++.++++.+++.+.+..+|.+.+|.+++++.+|||||||||+|||||+++|
T Consensus 95 i~~v~Q~~~l~~~tv~enl~~~~~~~~~~~~~~~l~~~~l~~~~~~l~~~~~~~~~~~~~~LSgGqkqRv~lAraL~~~p 174 (260)
T 2ghi_A 95 IGIVPQDTILFNETIKYNILYGKLDATDEEVIKATKSAQLYDFIEALPKKWDTIVGNKGMKLSGGERQRIAIARCLLKDP 174 (260)
T ss_dssp EEEECSSCCCCSEEHHHHHHTTCTTCCHHHHHHHHHHTTCHHHHHTSTTGGGCEESSSSBCCCHHHHHHHHHHHHHHHCC
T ss_pred EEEEcCCCcccccCHHHHHhccCCCCCHHHHHHHHHHhCCHHHHHhccccccccccCCcCcCCHHHHHHHHHHHHHHcCC
Confidence 799999999999999999999753 4566778888999999888899999999999999999999999999999999999
Q ss_pred CeeeeeCCCCCcCHHHHHHHHHHHHh-cCCCEEEEEccCCCccccCCEEEEEeCCeEEEccChHHHHhcCcchHHHHHh
Q 037346 502 DIFLLDDPFSPVDDHTGAHLFKFCWV-SSSKTVIYATHQVEFLPAADLILVIKDGKITQAGKYSDILNSGTDFMELVGA 579 (1156)
Q Consensus 502 ~illlDep~s~lD~~~~~~i~~~~~~-~~~~tvi~vtH~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~~~~~~~~~~~ 579 (1156)
+++||||||++||+.+++.+.+.+.. .+++|+|+|||+++.+..||+|++|++|++++.|+++++......|.+++..
T Consensus 175 ~lllLDEPts~LD~~~~~~i~~~l~~l~~~~tviivtH~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~~~~~~~~~~~ 253 (260)
T 2ghi_A 175 KIVIFDEATSSLDSKTEYLFQKAVEDLRKNRTLIIIAHRLSTISSAESIILLNKGKIVEKGTHKDLLKLNGEYAEMWNM 253 (260)
T ss_dssp SEEEEECCCCTTCHHHHHHHHHHHHHHTTTSEEEEECSSGGGSTTCSEEEEEETTEEEEEECHHHHHHHTSHHHHHHHH
T ss_pred CEEEEECccccCCHHHHHHHHHHHHHhcCCCEEEEEcCCHHHHHhCCEEEEEECCEEEEECCHHHHHhcChHHHHHHHh
Confidence 99999999999999999988876644 3579999999999988789999999999999999999998766666665543
|
| >1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=100.00 E-value=2e-45 Score=401.90 Aligned_cols=218 Identities=27% Similarity=0.442 Sum_probs=196.9
Q ss_pred EEEeeeEEEeCCCCCCCccccceEEeeCCeEEEEEcCCCCChHHHHHHHhCCCCCCCcEEEEcCe-------------EE
Q 037346 358 IEIIDGSFSWDFSSPNPTLRNINLKVFHGMRVAVCGTVGSGKSSCLSCILGGVPKESGIIRLCGT-------------KA 424 (1156)
Q Consensus 358 i~~~~~~f~~~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKSTll~~i~g~~~~~~G~i~~~g~-------------~~ 424 (1156)
++++|++|+|+ +++++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|. ++
T Consensus 2 l~~~~l~~~y~--~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i~ 79 (243)
T 1mv5_A 2 LSARHVDFAYD--DSEQILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQPTAGEITIDGQPIDNISLENWRSQIG 79 (243)
T ss_dssp EEEEEEEECSS--SSSCSEEEEEEEECTTEEEEEECCTTSSHHHHHHHHTTSSCCSBSCEEETTEESTTTSCSCCTTTCC
T ss_pred EEEEEEEEEeC--CCCceEEEeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEhhhCCHHHHHhhEE
Confidence 78999999995 2457999999999999999999999999999999999999999999999883 68
Q ss_pred EEecCCcCCCccHHHHhhcC-C-CCCHHHHHHHHHHhCCchhhhhCCCCCccccccCCCCCCHHHHHHHHHHHhhccCCC
Q 037346 425 YVAQSPWIQSGKIEENILFG-K-EMDRERYERVLEACSLKKDLEVLPFGDQTIIGERGINLSGGQKQRIQIARPLYQDAD 502 (1156)
Q Consensus 425 ~v~Q~~~~~~~ti~eni~~~-~-~~~~~~~~~~~~~~~l~~~~~~~~~g~~t~v~~~g~~LSgGqkqRi~lAral~~~~~ 502 (1156)
|+||+|.+|+.|++|||.++ . ..++++++++++.+++.+.++.+|.|+++.+++++.+|||||||||+|||||+++|+
T Consensus 80 ~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~gl~~~~~~~~~~LSgGq~qrv~lAral~~~p~ 159 (243)
T 1mv5_A 80 FVSQDSAIMAGTIRENLTYGLEGDYTDEDLWQVLDLAFARSFVENMPDQLNTEVGERGVKISGGQRQRLAIARAFLRNPK 159 (243)
T ss_dssp EECCSSCCCCEEHHHHTTSCTTSCSCHHHHHHHHHHHTCTTTTTSSTTGGGCEESTTSBCCCHHHHHHHHHHHHHHHCCS
T ss_pred EEcCCCccccccHHHHHhhhccCCCCHHHHHHHHHHhChHHHHHhCccchhchhccCcCcCCHHHHHHHHHHHHHhcCCC
Confidence 99999999989999999997 3 356677889999999999999999999999999999999999999999999999999
Q ss_pred eeeeeCCCCCcCHHHHHHHHHHHHh-cCCCEEEEEccCCCccccCCEEEEEeCCeEEEccChHHHHhcCcchHHHH
Q 037346 503 IFLLDDPFSPVDDHTGAHLFKFCWV-SSSKTVIYATHQVEFLPAADLILVIKDGKITQAGKYSDILNSGTDFMELV 577 (1156)
Q Consensus 503 illlDep~s~lD~~~~~~i~~~~~~-~~~~tvi~vtH~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~~~~~~~~~ 577 (1156)
++||||||++||+.+++.+.+.+.. .+|+|+|++||+++.+..||+|++|++|++++.|+++++......+.+++
T Consensus 160 lllLDEPts~LD~~~~~~i~~~l~~~~~~~tvi~vtH~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~~~~~~~~~ 235 (243)
T 1mv5_A 160 ILMLDEATASLDSESESMVQKALDSLMKGRTTLVIAHRLSTIVDADKIYFIEKGQITGSGKHNELVATHPLYAKYV 235 (243)
T ss_dssp EEEEECCSCSSCSSSCCHHHHHHHHHHTTSEEEEECCSHHHHHHCSEEEEEETTEECCCSCHHHHHHHCHHHHHHH
T ss_pred EEEEECCcccCCHHHHHHHHHHHHHhcCCCEEEEEeCChHHHHhCCEEEEEECCEEEEeCCHHHHHhccHHHHHHH
Confidence 9999999999999999988876643 36899999999999887799999999999999999999876544444444
|
| >2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.8e-44 Score=399.61 Aligned_cols=223 Identities=26% Similarity=0.408 Sum_probs=197.3
Q ss_pred ccEEEeeeEEEeCCCCCCCccccceEEeeCCeEEEEEcCCCCChHHHHHHHhCCCCCCCcEEEEcCe-------------
Q 037346 356 TAIEIIDGSFSWDFSSPNPTLRNINLKVFHGMRVAVCGTVGSGKSSCLSCILGGVPKESGIIRLCGT------------- 422 (1156)
Q Consensus 356 ~~i~~~~~~f~~~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKSTll~~i~g~~~~~~G~i~~~g~------------- 422 (1156)
..|+++|++|+|+..++.++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.
T Consensus 15 ~~l~~~~l~~~y~~~~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLlk~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~ 94 (271)
T 2ixe_A 15 GLVKFQDVSFAYPNHPNVQVLQGLTFTLYPGKVTALVGPNGSGKSTVAALLQNLYQPTGGKVLLDGEPLVQYDHHYLHTQ 94 (271)
T ss_dssp CCEEEEEEEECCTTCTTSCCEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEEGGGBCHHHHHHH
T ss_pred ceEEEEEEEEEeCCCCCceeeEeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCCEEEECCEEcccCCHHHHhcc
Confidence 4699999999996322357999999999999999999999999999999999999999999999983
Q ss_pred EEEEecCCcCCCccHHHHhhcCCCC-CH-HHHHHHHHHhCCchhhhhCCCCCccccccCCCCCCHHHHHHHHHHHhhccC
Q 037346 423 KAYVAQSPWIQSGKIEENILFGKEM-DR-ERYERVLEACSLKKDLEVLPFGDQTIIGERGINLSGGQKQRIQIARPLYQD 500 (1156)
Q Consensus 423 ~~~v~Q~~~~~~~ti~eni~~~~~~-~~-~~~~~~~~~~~l~~~~~~~~~g~~t~v~~~g~~LSgGqkqRi~lAral~~~ 500 (1156)
++||||+|.+|+.||+|||.++... .. ++..+.++..++.+.++.+|.|.++.+++++.+|||||||||+|||||+.+
T Consensus 95 i~~v~Q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~gl~~~~~~~~~~LSgGq~QRv~lAraL~~~ 174 (271)
T 2ixe_A 95 VAAVGQEPLLFGRSFRENIAYGLTRTPTMEEITAVAMESGAHDFISGFPQGYDTEVGETGNQLSGGQRQAVALARALIRK 174 (271)
T ss_dssp EEEECSSCCCCSSBHHHHHHTTCSSCCCHHHHHHHHHHHTCHHHHHHSTTGGGSBCCGGGTTSCHHHHHHHHHHHHHTTC
T ss_pred EEEEecCCccccccHHHHHhhhcccCChHHHHHHHHHHHhHHHHHHhhhcchhhhhcCCcCCCCHHHHHHHHHHHHHhcC
Confidence 7999999999989999999997532 22 445566677788888999999999999999999999999999999999999
Q ss_pred CCeeeeeCCCCCcCHHHHHHHHHHHHhc---CCCEEEEEccCCCccccCCEEEEEeCCeEEEccChHHHHhcCcchHHHH
Q 037346 501 ADIFLLDDPFSPVDDHTGAHLFKFCWVS---SSKTVIYATHQVEFLPAADLILVIKDGKITQAGKYSDILNSGTDFMELV 577 (1156)
Q Consensus 501 ~~illlDep~s~lD~~~~~~i~~~~~~~---~~~tvi~vtH~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~~~~~~~~~ 577 (1156)
|++||||||||+||+.+++.+.+.+... .|+|+|+|||+++.+..||+|++|++|++++.|+++++......|.+++
T Consensus 175 p~lllLDEPts~LD~~~~~~i~~~l~~~~~~~g~tviivtHd~~~~~~~d~v~~l~~G~i~~~g~~~~l~~~~~~~~~~~ 254 (271)
T 2ixe_A 175 PRLLILDNATSALDAGNQLRVQRLLYESPEWASRTVLLITQQLSLAERAHHILFLKEGSVCEQGTHLQLMERGGCYRSMV 254 (271)
T ss_dssp CSEEEEESTTTTCCHHHHHHHHHHHHHCTTTTTSEEEEECSCHHHHTTCSEEEEEETTEEEEEECHHHHHHHTSHHHHHH
T ss_pred CCEEEEECCccCCCHHHHHHHHHHHHHHHhhcCCEEEEEeCCHHHHHhCCEEEEEECCEEEEECCHHHHHhCcHHHHHHH
Confidence 9999999999999999999998876542 3899999999999887799999999999999999999987666666655
Q ss_pred H
Q 037346 578 G 578 (1156)
Q Consensus 578 ~ 578 (1156)
.
T Consensus 255 ~ 255 (271)
T 2ixe_A 255 E 255 (271)
T ss_dssp H
T ss_pred H
Confidence 3
|
| >3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.8e-43 Score=407.87 Aligned_cols=214 Identities=26% Similarity=0.327 Sum_probs=197.8
Q ss_pred CccEEEeeeEEEeCCCCCCCccccceEEeeCCeEEEEEcCCCCChHHHHHHHhCCCCCCCcEEEEcCe------------
Q 037346 355 DTAIEIIDGSFSWDFSSPNPTLRNINLKVFHGMRVAVCGTVGSGKSSCLSCILGGVPKESGIIRLCGT------------ 422 (1156)
Q Consensus 355 ~~~i~~~~~~f~~~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKSTll~~i~g~~~~~~G~i~~~g~------------ 422 (1156)
...|+++|++|+|+. ++.++|+|+||+|++||+++|+||||||||||+++|+|+++ ++|+|.++|+
T Consensus 17 ~~~i~~~~l~~~y~~-~~~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~-~~G~I~i~G~~i~~~~~~~~rr 94 (390)
T 3gd7_A 17 GGQMTVKDLTAKYTE-GGNAILENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLN-TEGEIQIDGVSWDSITLEQWRK 94 (390)
T ss_dssp SCCEEEEEEEEESSS-SSCCSEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTCSE-EEEEEEESSCBTTSSCHHHHHH
T ss_pred CCeEEEEEEEEEecC-CCeEEeeceeEEEcCCCEEEEECCCCChHHHHHHHHhCCCC-CCeEEEECCEECCcCChHHHhC
Confidence 356999999999963 24679999999999999999999999999999999999998 8999999983
Q ss_pred -EEEEecCCcCCCccHHHHhhcCCCCCHHHHHHHHHHhCCchhhhhCCCCCccccccCCCCCCHHHHHHHHHHHhhccCC
Q 037346 423 -KAYVAQSPWIQSGKIEENILFGKEMDRERYERVLEACSLKKDLEVLPFGDQTIIGERGINLSGGQKQRIQIARPLYQDA 501 (1156)
Q Consensus 423 -~~~v~Q~~~~~~~ti~eni~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~t~v~~~g~~LSgGqkqRi~lAral~~~~ 501 (1156)
++||+|++.+|..||+||+.+.....+++.+++++.++|.+.++..|.+++|.+++.|.+|||||||||+|||||+.+|
T Consensus 95 ~ig~v~Q~~~lf~~tv~enl~~~~~~~~~~v~~~l~~~~L~~~~~~~p~~l~~~i~~~g~~LSGGqrQRvalARAL~~~P 174 (390)
T 3gd7_A 95 AFGVIPQKVFIFSGTFRKNLDPNAAHSDQEIWKVADEVGLRSVIEQFPGKLDFVLVDGGCVLSHGHKQLMCLARSVLSKA 174 (390)
T ss_dssp TEEEESCCCCCCSEEHHHHHCTTCCSCHHHHHHHHHHTTCHHHHTTSTTGGGCEECTTTTTSCHHHHHHHHHHHHHHTTC
T ss_pred CEEEEcCCcccCccCHHHHhhhccccCHHHHHHHHHHhCCHHHHhhcccccccccccccccCCHHHHHHHHHHHHHhcCC
Confidence 7999999999999999999976667788899999999999999999999999999999999999999999999999999
Q ss_pred CeeeeeCCCCCcCHHHHHHHHHHHHh-cCCCEEEEEccCCCccccCCEEEEEeCCeEEEccChHHHHhcC
Q 037346 502 DIFLLDDPFSPVDDHTGAHLFKFCWV-SSSKTVIYATHQVEFLPAADLILVIKDGKITQAGKYSDILNSG 570 (1156)
Q Consensus 502 ~illlDep~s~lD~~~~~~i~~~~~~-~~~~tvi~vtH~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~~ 570 (1156)
++||||||||+||+..+..+.+.+.. ..++|+|+|||+++.+..||+|++|++|+|++.|+++++....
T Consensus 175 ~lLLLDEPts~LD~~~~~~l~~~l~~~~~~~tvi~vtHd~e~~~~aDri~vl~~G~i~~~g~~~el~~~p 244 (390)
T 3gd7_A 175 KILLLDEPSAHLDPVTYQIIRRTLKQAFADCTVILCEARIEAMLECDQFLVIEENKVRQYDSILELYHYP 244 (390)
T ss_dssp CEEEEESHHHHSCHHHHHHHHHHHHTTTTTSCEEEECSSSGGGTTCSEEEEEETTEEEEESSHHHHHHCC
T ss_pred CEEEEeCCccCCCHHHHHHHHHHHHHHhCCCEEEEEEcCHHHHHhCCEEEEEECCEEEEECCHHHHHhCC
Confidence 99999999999999999998876654 3578999999999888889999999999999999999998754
|
| >2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-43 Score=395.68 Aligned_cols=230 Identities=35% Similarity=0.611 Sum_probs=183.2
Q ss_pred HHHHHhccCCCCccccccCCCCCCCccEEEeeeEEEeCCCCCCCccccceEEeeCCeEEEEEcCCCCChHHHHHHHhCCC
Q 037346 331 RIASFLCLEGLQTDVLEKMPRGNSDTAIEIIDGSFSWDFSSPNPTLRNINLKVFHGMRVAVCGTVGSGKSSCLSCILGGV 410 (1156)
Q Consensus 331 Ri~~fl~~~~~~~~~~~~~~~~~~~~~i~~~~~~f~~~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKSTll~~i~g~~ 410 (1156)
|+.++++.+...... . ........++++|++|.+ +++|+|+||+|++|++++|+||||||||||+++|+|++
T Consensus 17 ~~~~~~~~~~~~~~~-~--~~~~~~~~l~~~~l~~~~-----~~vl~~isl~i~~Ge~~~i~G~NGsGKSTLlk~l~Gl~ 88 (290)
T 2bbs_A 17 GFGELFEKAKQNNNN-R--KTSNGDDSLSFSNFSLLG-----TPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGEL 88 (290)
T ss_dssp HHHHHHHHCC--------------------------C-----CCSEEEEEEEECTTCEEEEEESTTSSHHHHHHHHTTSS
T ss_pred HHHHHhccccccccc-c--cccCCCceEEEEEEEEcC-----ceEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCC
Confidence 677777654322110 1 111223469999999853 36999999999999999999999999999999999999
Q ss_pred CCCCcEEEEcCeEEEEecCCcCCCccHHHHhhcCCCCCHHHHHHHHHHhCCchhhhhCCCCCccccccCCCCCCHHHHHH
Q 037346 411 PKESGIIRLCGTKAYVAQSPWIQSGKIEENILFGKEMDRERYERVLEACSLKKDLEVLPFGDQTIIGERGINLSGGQKQR 490 (1156)
Q Consensus 411 ~~~~G~i~~~g~~~~v~Q~~~~~~~ti~eni~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~t~v~~~g~~LSgGqkqR 490 (1156)
+|++|+|.++|+++|+||+|.+++.|++||+. +......++.++++.+++.+.+..+|.++++.+++++.+||||||||
T Consensus 89 ~p~~G~I~~~g~i~~v~Q~~~l~~~tv~enl~-~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~LSgGq~QR 167 (290)
T 2bbs_A 89 EPSEGKIKHSGRISFCSQNSWIMPGTIKENII-GVSYDEYRYRSVIKACQLEEDISKFAEKDNIVLGEGGITLSGGQRAR 167 (290)
T ss_dssp CEEEEEEECCSCEEEECSSCCCCSSBHHHHHH-TTCCCHHHHHHHHHHTTCHHHHHTSTTGGGCBC----CCCCHHHHHH
T ss_pred CCCCcEEEECCEEEEEeCCCccCcccHHHHhh-CcccchHHHHHHHHHhChHHHHHhccccccchhcCccCcCCHHHHHH
Confidence 99999999999999999999999899999999 65455556677888899988889999999999999999999999999
Q ss_pred HHHHHhhccCCCeeeeeCCCCCcCHHHHHHHHHHHHh--cCCCEEEEEccCCCccccCCEEEEEeCCeEEEccChHHHHh
Q 037346 491 IQIARPLYQDADIFLLDDPFSPVDDHTGAHLFKFCWV--SSSKTVIYATHQVEFLPAADLILVIKDGKITQAGKYSDILN 568 (1156)
Q Consensus 491 i~lAral~~~~~illlDep~s~lD~~~~~~i~~~~~~--~~~~tvi~vtH~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~ 568 (1156)
++|||||+.+|+++||||||++||+.+++.+++.++. .+|+|+|++||+++.+..||+|++|++|++++.|+++++..
T Consensus 168 v~lAraL~~~p~lllLDEPts~LD~~~~~~i~~~ll~~~~~~~tviivtHd~~~~~~~d~i~~l~~G~i~~~g~~~~l~~ 247 (290)
T 2bbs_A 168 ISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMANKTRILVTSKMEHLKKADKILILHEGSSYFYGTFSELQN 247 (290)
T ss_dssp HHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHCCCCCTTTSEEEEECCCHHHHHHSSEEEEEETTEEEEEECHHHHHH
T ss_pred HHHHHHHHCCCCEEEEECCcccCCHHHHHHHHHHHHHHhhCCCEEEEEecCHHHHHcCCEEEEEECCeEEEeCCHHHHhh
Confidence 9999999999999999999999999999999876432 35889999999998887799999999999999999999865
Q ss_pred c
Q 037346 569 S 569 (1156)
Q Consensus 569 ~ 569 (1156)
.
T Consensus 248 ~ 248 (290)
T 2bbs_A 248 L 248 (290)
T ss_dssp H
T ss_pred h
Confidence 3
|
| >3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-42 Score=384.15 Aligned_cols=201 Identities=24% Similarity=0.393 Sum_probs=174.8
Q ss_pred ccEEEeeeEEEeCCCCCCCccccceEEeeCCeEEEEEcCCCCChHHHHHHHhCCCCCCCcEEEEcCe-------------
Q 037346 356 TAIEIIDGSFSWDFSSPNPTLRNINLKVFHGMRVAVCGTVGSGKSSCLSCILGGVPKESGIIRLCGT------------- 422 (1156)
Q Consensus 356 ~~i~~~~~~f~~~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKSTll~~i~g~~~~~~G~i~~~g~------------- 422 (1156)
..|+++|++|+|+. ..++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.
T Consensus 6 ~~l~i~~ls~~y~~--~~~~L~~isl~i~~Ge~~~iiGpnGsGKSTLl~~l~Gl~~p~~G~I~~~G~~i~~~~~~~~~~~ 83 (275)
T 3gfo_A 6 YILKVEELNYNYSD--GTHALKGINMNIKRGEVTAILGGNGVGKSTLFQNFNGILKPSSGRILFDNKPIDYSRKGIMKLR 83 (275)
T ss_dssp EEEEEEEEEEECTT--SCEEEEEEEEEEETTSEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEECCCSHHHHHHHH
T ss_pred cEEEEEEEEEEECC--CCeEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCeEEEECCEECCcccccHHHHh
Confidence 36999999999963 345999999999999999999999999999999999999999999999983
Q ss_pred --EEEEecCC--cCCCccHHHHhhcCCC---CC----HHHHHHHHHHhCCchhhhhCCCCCccccccCCCCCCHHHHHHH
Q 037346 423 --KAYVAQSP--WIQSGKIEENILFGKE---MD----RERYERVLEACSLKKDLEVLPFGDQTIIGERGINLSGGQKQRI 491 (1156)
Q Consensus 423 --~~~v~Q~~--~~~~~ti~eni~~~~~---~~----~~~~~~~~~~~~l~~~~~~~~~g~~t~v~~~g~~LSgGqkqRi 491 (1156)
+|||||+| .++..||+||+.|+.. .+ .++.+++++.++|.+..+ +.+.+|||||||||
T Consensus 84 ~~ig~v~Q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~-----------~~~~~LSgGqkQRv 152 (275)
T 3gfo_A 84 ESIGIVFQDPDNQLFSASVYQDVSFGAVNMKLPEDEIRKRVDNALKRTGIEHLKD-----------KPTHCLSFGQKKRV 152 (275)
T ss_dssp HSEEEECSSGGGTCCSSBHHHHHHHHHHTSCCCHHHHHHHHHHHHHHTTCGGGTT-----------SBGGGSCHHHHHHH
T ss_pred CcEEEEEcCcccccccCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhc-----------CCcccCCHHHHHHH
Confidence 79999998 4677899999998632 22 345677888888865433 44578999999999
Q ss_pred HHHHhhccCCCeeeeeCCCCCcCHHHHHHHHHHHHh---cCCCEEEEEccCCCccc-cCCEEEEEeCCeEEEccChHHHH
Q 037346 492 QIARPLYQDADIFLLDDPFSPVDDHTGAHLFKFCWV---SSSKTVIYATHQVEFLP-AADLILVIKDGKITQAGKYSDIL 567 (1156)
Q Consensus 492 ~lAral~~~~~illlDep~s~lD~~~~~~i~~~~~~---~~~~tvi~vtH~~~~~~-~~d~i~~l~~G~i~~~g~~~~l~ 567 (1156)
+|||||+.+|++||||||||+||+.++..+++.+.. .+|+|+|+|||+++.+. .||+|++|++|++++.|+++++.
T Consensus 153 ~iAraL~~~P~lLlLDEPts~LD~~~~~~i~~~l~~l~~~~g~tvi~vtHdl~~~~~~~drv~~l~~G~i~~~g~~~~~~ 232 (275)
T 3gfo_A 153 AIAGVLVMEPKVLILDEPTAGLDPMGVSEIMKLLVEMQKELGITIIIATHDIDIVPLYCDNVFVMKEGRVILQGNPKEVF 232 (275)
T ss_dssp HHHHHHTTCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHHHCCEEEEEESCCSSGGGGCSEEEEEETTEEEEEECHHHHT
T ss_pred HHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHHhhCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEECCHHHHh
Confidence 999999999999999999999999999998876643 23899999999999986 59999999999999999999987
Q ss_pred hc
Q 037346 568 NS 569 (1156)
Q Consensus 568 ~~ 569 (1156)
..
T Consensus 233 ~~ 234 (275)
T 3gfo_A 233 AE 234 (275)
T ss_dssp HH
T ss_pred cC
Confidence 64
|
| >3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C | Back alignment and structure |
|---|
Probab=100.00 E-value=1e-42 Score=395.28 Aligned_cols=205 Identities=23% Similarity=0.334 Sum_probs=177.7
Q ss_pred CccEEEeeeEEEeCCCC-CCCccccceEEeeCCeEEEEEcCCCCChHHHHHHHhCCCCCCCcEEEEcCe-----------
Q 037346 355 DTAIEIIDGSFSWDFSS-PNPTLRNINLKVFHGMRVAVCGTVGSGKSSCLSCILGGVPKESGIIRLCGT----------- 422 (1156)
Q Consensus 355 ~~~i~~~~~~f~~~~~~-~~~~l~~i~l~i~~g~~~~ivG~~GsGKSTll~~i~g~~~~~~G~i~~~g~----------- 422 (1156)
+..|+++|++++|+... +.++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+
T Consensus 22 ~~mi~v~~ls~~y~~~~~~~~aL~~vsl~i~~Gei~~IiGpnGaGKSTLlr~i~GL~~p~~G~I~i~G~~i~~~~~~~~~ 101 (366)
T 3tui_C 22 KHMIKLSNITKVFHQGTRTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEGSVLVDGQELTTLSESELT 101 (366)
T ss_dssp -CCEEEEEEEEEEECSSSEEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECSSCCHHHHH
T ss_pred CceEEEEeEEEEeCCCCCCeEEEEeeEEEEcCCCEEEEEcCCCchHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHH
Confidence 35699999999997422 246899999999999999999999999999999999999999999999983
Q ss_pred -----EEEEecCCcCCCc-cHHHHhhcCCC---CC----HHHHHHHHHHhCCchhhhhCCCCCccccccCCCCCCHHHHH
Q 037346 423 -----KAYVAQSPWIQSG-KIEENILFGKE---MD----RERYERVLEACSLKKDLEVLPFGDQTIIGERGINLSGGQKQ 489 (1156)
Q Consensus 423 -----~~~v~Q~~~~~~~-ti~eni~~~~~---~~----~~~~~~~~~~~~l~~~~~~~~~g~~t~v~~~g~~LSgGqkq 489 (1156)
+|||+|+|.++.. ||+||+.|+.. .+ .++..++++.++|.+..+ ....+|||||||
T Consensus 102 ~~r~~Ig~v~Q~~~l~~~~TV~env~~~~~~~~~~~~~~~~~v~~lL~~vgL~~~~~-----------~~~~~LSGGqkQ 170 (366)
T 3tui_C 102 KARRQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEVKRRVTELLSLVGLGDKHD-----------SYPSNLSGGQKQ 170 (366)
T ss_dssp HHHTTEEEECSSCCCCTTSCHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTCGGGTT-----------CCTTTSCHHHHH
T ss_pred HHhCcEEEEeCCCccCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchHhc-----------CChhhCCHHHHH
Confidence 7999999988764 99999998631 22 345677888888876544 345789999999
Q ss_pred HHHHHHhhccCCCeeeeeCCCCCcCHHHHHHHHHHHHh---cCCCEEEEEccCCCccc-cCCEEEEEeCCeEEEccChHH
Q 037346 490 RIQIARPLYQDADIFLLDDPFSPVDDHTGAHLFKFCWV---SSSKTVIYATHQVEFLP-AADLILVIKDGKITQAGKYSD 565 (1156)
Q Consensus 490 Ri~lAral~~~~~illlDep~s~lD~~~~~~i~~~~~~---~~~~tvi~vtH~~~~~~-~~d~i~~l~~G~i~~~g~~~~ 565 (1156)
||+|||||+.+|++||||||||+||+.++..+++.+.. ..|.|+|+|||+++.+. .||+|++|++|++++.|++++
T Consensus 171 RVaIArAL~~~P~lLLlDEPTs~LD~~~~~~i~~lL~~l~~~~g~Tii~vTHdl~~~~~~aDrv~vl~~G~iv~~g~~~e 250 (366)
T 3tui_C 171 RVAIARALASNPKVLLCDQATSALDPATTRSILELLKDINRRLGLTILLITHEMDVVKRICDCVAVISNGELIEQDTVSE 250 (366)
T ss_dssp HHHHHHHTTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHSCCEEEEEESCHHHHHHHCSEEEEEETTEEEECCBHHH
T ss_pred HHHHHHHHhcCCCEEEEECCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEEcCHHH
Confidence 99999999999999999999999999999999886643 34899999999999986 499999999999999999999
Q ss_pred HHhcC
Q 037346 566 ILNSG 570 (1156)
Q Consensus 566 l~~~~ 570 (1156)
++...
T Consensus 251 v~~~p 255 (366)
T 3tui_C 251 VFSHP 255 (366)
T ss_dssp HHSSC
T ss_pred HHhCC
Confidence 98653
|
| >3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=8.3e-43 Score=378.59 Aligned_cols=199 Identities=26% Similarity=0.367 Sum_probs=167.9
Q ss_pred EEEeeeEEEeCCCC-CCCccccceEEeeCCeEEEEEcCCCCChHHHHHHHhCCCCCCCcEEEEcCe--------------
Q 037346 358 IEIIDGSFSWDFSS-PNPTLRNINLKVFHGMRVAVCGTVGSGKSSCLSCILGGVPKESGIIRLCGT-------------- 422 (1156)
Q Consensus 358 i~~~~~~f~~~~~~-~~~~l~~i~l~i~~g~~~~ivG~~GsGKSTll~~i~g~~~~~~G~i~~~g~-------------- 422 (1156)
++++|++|+|+... +.++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.
T Consensus 2 l~~~~l~~~y~~~~~~~~~L~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~ 81 (235)
T 3tif_A 2 VKLKNVTKTYKMGEEIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPTEGEVYIDNIKTNDLDDDELTKIR 81 (235)
T ss_dssp EEEEEEEEEEEETTEEEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHHH
T ss_pred EEEEEEEEEeCCCCcceeeEEeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCceEEEECCEEcccCCHHHHHHHh
Confidence 78999999997322 246999999999999999999999999999999999999999999999982
Q ss_pred ---EEEEecCCcCCCc-cHHHHhhcCC------CCC----HHHHHHHHHHhCCchhhhhCCCCCccccccCCCCCCHHHH
Q 037346 423 ---KAYVAQSPWIQSG-KIEENILFGK------EMD----RERYERVLEACSLKKDLEVLPFGDQTIIGERGINLSGGQK 488 (1156)
Q Consensus 423 ---~~~v~Q~~~~~~~-ti~eni~~~~------~~~----~~~~~~~~~~~~l~~~~~~~~~g~~t~v~~~g~~LSgGqk 488 (1156)
++|++|+|.++.. ||+||+.++. ... .++..++++.+++.+.. ..+.+.+||||||
T Consensus 82 ~~~i~~v~Q~~~l~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~----------~~~~~~~LSgGq~ 151 (235)
T 3tif_A 82 RDKIGFVFQQFNLIPLLTALENVELPLIFKYRGAMSGEERRKRALECLKMAELEERF----------ANHKPNQLSGGQQ 151 (235)
T ss_dssp HHHEEEECTTCCCCTTSCHHHHHHHHHHTCSSSCCCHHHHHHHHHHHHHHTTCCGGG----------TTCCGGGSCHHHH
T ss_pred hccEEEEecCCccCCCCcHHHHHHHHHHhhhccCCCHHHHHHHHHHHHHHCCCChhh----------hhCChhhCCHHHH
Confidence 8999999998775 9999998742 122 23455666777765432 1345678999999
Q ss_pred HHHHHHHhhccCCCeeeeeCCCCCcCHHHHHHHHHHHHh---cCCCEEEEEccCCCccccCCEEEEEeCCeEEEccChHH
Q 037346 489 QRIQIARPLYQDADIFLLDDPFSPVDDHTGAHLFKFCWV---SSSKTVIYATHQVEFLPAADLILVIKDGKITQAGKYSD 565 (1156)
Q Consensus 489 qRi~lAral~~~~~illlDep~s~lD~~~~~~i~~~~~~---~~~~tvi~vtH~~~~~~~~d~i~~l~~G~i~~~g~~~~ 565 (1156)
|||+|||||+.+|+++||||||++||+.++..+++.+.. ..|+|+|+|||+++....||+|++|++|++++.++.++
T Consensus 152 QRv~iAral~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~g~tvi~vtHd~~~~~~~d~i~~l~~G~i~~~~~~~~ 231 (235)
T 3tif_A 152 QRVAIARALANNPPIILADQPTWALDSKTGEKIMQLLKKLNEEDGKTVVVVTHDINVARFGERIIYLKDGEVEREEKLRG 231 (235)
T ss_dssp HHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHCCEEEEECSCHHHHTTSSEEEEEETTEEEEEEECC-
T ss_pred HHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEcCCHHHHHhCCEEEEEECCEEEEEcChhh
Confidence 999999999999999999999999999999999887644 23899999999998777799999999999999887766
Q ss_pred H
Q 037346 566 I 566 (1156)
Q Consensus 566 l 566 (1156)
+
T Consensus 232 ~ 232 (235)
T 3tif_A 232 F 232 (235)
T ss_dssp -
T ss_pred h
Confidence 4
|
| >3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.6e-42 Score=391.04 Aligned_cols=201 Identities=30% Similarity=0.443 Sum_probs=177.1
Q ss_pred cEEEeeeEEEeCCCCCCCccccceEEeeCCeEEEEEcCCCCChHHHHHHHhCCCCCCCcEEEEcCe--------------
Q 037346 357 AIEIIDGSFSWDFSSPNPTLRNINLKVFHGMRVAVCGTVGSGKSSCLSCILGGVPKESGIIRLCGT-------------- 422 (1156)
Q Consensus 357 ~i~~~~~~f~~~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKSTll~~i~g~~~~~~G~i~~~g~-------------- 422 (1156)
.|+++|++++|+ +.++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+
T Consensus 4 ~l~i~~ls~~y~---~~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~~G~I~i~G~~i~~~~~~~~~~~r 80 (359)
T 3fvq_A 4 ALHIGHLSKSFQ---NTPVLNDISLSLDPGEILFIIGASGCGKTTLLRCLAGFEQPDSGEISLSGKTIFSKNTNLPVRER 80 (359)
T ss_dssp CEEEEEEEEEET---TEEEEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTSSCCSEEEEEETTEEEESSSCBCCGGGS
T ss_pred EEEEEeEEEEEC---CEEEEEeeEEEEcCCCEEEEECCCCchHHHHHHHHhcCCCCCCcEEEECCEECcccccccchhhC
Confidence 589999999995 457999999999999999999999999999999999999999999999883
Q ss_pred -EEEEecCCcCCC-ccHHHHhhcCCCC-------CHHHHHHHHHHhCCchhhhhCCCCCccccccCCCCCCHHHHHHHHH
Q 037346 423 -KAYVAQSPWIQS-GKIEENILFGKEM-------DRERYERVLEACSLKKDLEVLPFGDQTIIGERGINLSGGQKQRIQI 493 (1156)
Q Consensus 423 -~~~v~Q~~~~~~-~ti~eni~~~~~~-------~~~~~~~~~~~~~l~~~~~~~~~g~~t~v~~~g~~LSgGqkqRi~l 493 (1156)
+|||+|++.+|. .||+|||.|+... ..++.+++++.++|.+..+ +...+|||||||||+|
T Consensus 81 ~ig~vfQ~~~l~p~ltV~eni~~~l~~~~~~~~~~~~~v~~~l~~~gL~~~~~-----------r~~~~LSGGq~QRVal 149 (359)
T 3fvq_A 81 RLGYLVQEGVLFPHLTVYRNIAYGLGNGKGRTAQERQRIEAMLELTGISELAG-----------RYPHELSGGQQQRAAL 149 (359)
T ss_dssp CCEEECTTCCCCTTSCHHHHHHTTSTTSSCCSHHHHHHHHHHHHHHTCGGGTT-----------SCGGGSCHHHHHHHHH
T ss_pred CEEEEeCCCcCCCCCCHHHHHHHHHHHcCCChHHHHHHHHHHHHHcCCchHhc-----------CChhhCCHHHHHHHHH
Confidence 699999998876 5999999998532 1356778888888876554 3457899999999999
Q ss_pred HHhhccCCCeeeeeCCCCCcCHHHHHHHHHHHHh---cCCCEEEEEccCCCccc-cCCEEEEEeCCeEEEccChHHHHhc
Q 037346 494 ARPLYQDADIFLLDDPFSPVDDHTGAHLFKFCWV---SSSKTVIYATHQVEFLP-AADLILVIKDGKITQAGKYSDILNS 569 (1156)
Q Consensus 494 Aral~~~~~illlDep~s~lD~~~~~~i~~~~~~---~~~~tvi~vtH~~~~~~-~~d~i~~l~~G~i~~~g~~~~l~~~ 569 (1156)
||||+.+|++||||||||+||+..+..+.+.+.. ..|.|+|+||||++.+. .||+|++|++|+|++.|+++++...
T Consensus 150 ArAL~~~P~lLLLDEPts~LD~~~r~~l~~~l~~~~~~~g~tvi~vTHd~~ea~~~aDri~vl~~G~i~~~g~~~el~~~ 229 (359)
T 3fvq_A 150 ARALAPDPELILLDEPFSALDEQLRRQIREDMIAALRANGKSAVFVSHDREEALQYADRIAVMKQGRILQTASPHELYRQ 229 (359)
T ss_dssp HHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHTTCEEEEECCCHHHHHHHCSEEEEEETTEEEEEECHHHHHHS
T ss_pred HHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHHCCEEEEEECCEEEEEeCHHHHHhC
Confidence 9999999999999999999999999988765433 46899999999998875 5999999999999999999999865
Q ss_pred Cc
Q 037346 570 GT 571 (1156)
Q Consensus 570 ~~ 571 (1156)
..
T Consensus 230 p~ 231 (359)
T 3fvq_A 230 PA 231 (359)
T ss_dssp CS
T ss_pred cc
Confidence 43
|
| >3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A | Back alignment and structure |
|---|
Probab=100.00 E-value=6.4e-42 Score=391.43 Aligned_cols=200 Identities=29% Similarity=0.409 Sum_probs=176.2
Q ss_pred cEEEeeeEEEeCCCCCCCccccceEEeeCCeEEEEEcCCCCChHHHHHHHhCCCCCCCcEEEEcCe-----------EEE
Q 037346 357 AIEIIDGSFSWDFSSPNPTLRNINLKVFHGMRVAVCGTVGSGKSSCLSCILGGVPKESGIIRLCGT-----------KAY 425 (1156)
Q Consensus 357 ~i~~~~~~f~~~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKSTll~~i~g~~~~~~G~i~~~g~-----------~~~ 425 (1156)
.|+++|++++|+ +..+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+ ++|
T Consensus 3 ~l~~~~l~~~yg---~~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~~G~I~i~G~~~~~~~~~~r~ig~ 79 (381)
T 3rlf_A 3 SVQLQNVTKAWG---EVVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETITSGDLFIGEKRMNDTPPAERGVGM 79 (381)
T ss_dssp CEEEEEEEEEET---TEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTCCGGGSCEEE
T ss_pred EEEEEeEEEEEC---CEEEEeeeEEEECCCCEEEEEcCCCchHHHHHHHHHcCCCCCCeEEEECCEECCCCCHHHCCEEE
Confidence 489999999996 457999999999999999999999999999999999999999999999984 799
Q ss_pred EecCCcCCCc-cHHHHhhcCCC---CC----HHHHHHHHHHhCCchhhhhCCCCCccccccCCCCCCHHHHHHHHHHHhh
Q 037346 426 VAQSPWIQSG-KIEENILFGKE---MD----RERYERVLEACSLKKDLEVLPFGDQTIIGERGINLSGGQKQRIQIARPL 497 (1156)
Q Consensus 426 v~Q~~~~~~~-ti~eni~~~~~---~~----~~~~~~~~~~~~l~~~~~~~~~g~~t~v~~~g~~LSgGqkqRi~lAral 497 (1156)
|+|++.+|.. ||+|||.|+.. .+ +++.+++++.++|.+..+ +...+|||||||||+|||||
T Consensus 80 VfQ~~~l~p~ltV~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~-----------r~p~~LSGGqrQRVaiArAL 148 (381)
T 3rlf_A 80 VFQSYALYPHLSVAENMSFGLKLAGAKKEVINQRVNQVAEVLQLAHLLD-----------RKPKALSGGQRQRVAIGRTL 148 (381)
T ss_dssp ECTTCCCCTTSCHHHHHTHHHHHTTCCHHHHHHHHHHHHHHTTCGGGTT-----------CCGGGSCHHHHHHHHHHHHH
T ss_pred EecCCcCCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhc-----------CChhHCCHHHHHHHHHHHHH
Confidence 9999998764 99999998632 22 346677888888876544 44578999999999999999
Q ss_pred ccCCCeeeeeCCCCCcCHHHHHHHHHHHHh---cCCCEEEEEccCCCccc-cCCEEEEEeCCeEEEccChHHHHhcC
Q 037346 498 YQDADIFLLDDPFSPVDDHTGAHLFKFCWV---SSSKTVIYATHQVEFLP-AADLILVIKDGKITQAGKYSDILNSG 570 (1156)
Q Consensus 498 ~~~~~illlDep~s~lD~~~~~~i~~~~~~---~~~~tvi~vtH~~~~~~-~~d~i~~l~~G~i~~~g~~~~l~~~~ 570 (1156)
+.+|++||||||||+||+..+..+.+.+.. ..|.|+|+||||++.+. .||+|++|++|++++.|+++++....
T Consensus 149 ~~~P~lLLLDEPts~LD~~~~~~l~~~l~~l~~~~g~tii~vTHd~~ea~~~aDri~vl~~G~i~~~g~~~~l~~~p 225 (381)
T 3rlf_A 149 VAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKRLGRTMIYVTHDQVEAMTLADKIVVLDAGRVAQVGKPLELYHYP 225 (381)
T ss_dssp HHCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHCCEEEEECSCHHHHHHHCSEEEEEETTEEEEEECHHHHHHCC
T ss_pred HcCCCEEEEECCCcCCCHHHHHHHHHHHHHHHHhCCCEEEEEECCHHHHHHhCCEEEEEECCEEEEEeCHHHHHhCC
Confidence 999999999999999999999998876643 34899999999998875 59999999999999999999998654
|
| >2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.7e-41 Score=373.05 Aligned_cols=199 Identities=27% Similarity=0.373 Sum_probs=173.8
Q ss_pred cEEEeeeEEEeCCCCCCCccccceEEeeCCeEEEEEcCCCCChHHHHHHHhCCCCCCCcEEEEcCe--------------
Q 037346 357 AIEIIDGSFSWDFSSPNPTLRNINLKVFHGMRVAVCGTVGSGKSSCLSCILGGVPKESGIIRLCGT-------------- 422 (1156)
Q Consensus 357 ~i~~~~~~f~~~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKSTll~~i~g~~~~~~G~i~~~g~-------------- 422 (1156)
.++++|++++|+ ++++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.
T Consensus 24 ~l~i~~l~~~y~---~~~vL~~vsl~i~~Gei~~liG~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~~ 100 (263)
T 2olj_A 24 MIDVHQLKKSFG---SLEVLKGINVHIREGEVVVVIGPSGSGKSTFLRCLNLLEDFDEGEIIIDGINLKAKDTNLNKVRE 100 (263)
T ss_dssp SEEEEEEEEEET---TEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEESSSTTCCHHHHHH
T ss_pred eEEEEeEEEEEC---CEEEEEeeEEEEcCCCEEEEEcCCCCcHHHHHHHHHcCCCCCCcEEEECCEECCCccccHHHHhC
Confidence 599999999995 357999999999999999999999999999999999999999999999882
Q ss_pred -EEEEecCCcCCCc-cHHHHhhcCC----CCC----HHHHHHHHHHhCCchhhhhCCCCCccccccCCCCCCHHHHHHHH
Q 037346 423 -KAYVAQSPWIQSG-KIEENILFGK----EMD----RERYERVLEACSLKKDLEVLPFGDQTIIGERGINLSGGQKQRIQ 492 (1156)
Q Consensus 423 -~~~v~Q~~~~~~~-ti~eni~~~~----~~~----~~~~~~~~~~~~l~~~~~~~~~g~~t~v~~~g~~LSgGqkqRi~ 492 (1156)
++||+|++.++.. ||+||+.++. ... +++.+++++.++|.+..+ +.+.+||||||||++
T Consensus 101 ~i~~v~Q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~-----------~~~~~LSgGqkQRv~ 169 (263)
T 2olj_A 101 EVGMVFQRFNLFPHMTVLNNITLAPMKVRKWPREKAEAKAMELLDKVGLKDKAH-----------AYPDSLSGGQAQRVA 169 (263)
T ss_dssp HEEEECSSCCCCTTSCHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHTTCGGGTT-----------SCGGGSCHHHHHHHH
T ss_pred cEEEEeCCCcCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCchHhc-----------CChhhCCHHHHHHHH
Confidence 7999999988765 9999998852 122 245667788888765433 445789999999999
Q ss_pred HHHhhccCCCeeeeeCCCCCcCHHHHHHHHHHHHh--cCCCEEEEEccCCCccc-cCCEEEEEeCCeEEEccChHHHHhc
Q 037346 493 IARPLYQDADIFLLDDPFSPVDDHTGAHLFKFCWV--SSSKTVIYATHQVEFLP-AADLILVIKDGKITQAGKYSDILNS 569 (1156)
Q Consensus 493 lAral~~~~~illlDep~s~lD~~~~~~i~~~~~~--~~~~tvi~vtH~~~~~~-~~d~i~~l~~G~i~~~g~~~~l~~~ 569 (1156)
|||||+.+|+++||||||++||+.+++.+.+.+.. .+|+|+|++||+++.+. .||+|++|++|++++.|+++++.+.
T Consensus 170 lAraL~~~p~lllLDEPts~LD~~~~~~~~~~l~~l~~~g~tvi~vtHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~ 249 (263)
T 2olj_A 170 IARALAMEPKIMLFDEPTSALDPEMVGEVLSVMKQLANEGMTMVVVTHEMGFAREVGDRVLFMDGGYIIEEGKPEDLFDR 249 (263)
T ss_dssp HHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHTTCEEEEECSCHHHHHHHCSEEEEEETTEEEEEECHHHHHHS
T ss_pred HHHHHHCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEcCCHHHHHHhCCEEEEEECCEEEEECCHHHHHhC
Confidence 99999999999999999999999999998876643 35899999999999886 5999999999999999999988753
|
| >2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-41 Score=367.03 Aligned_cols=192 Identities=24% Similarity=0.308 Sum_probs=166.5
Q ss_pred cEEEeeeEEEeCCCCCCCccccceEEeeCCeEEEEEcCCCCChHHHHHHHhCCCCCCCcEEEEcC---------------
Q 037346 357 AIEIIDGSFSWDFSSPNPTLRNINLKVFHGMRVAVCGTVGSGKSSCLSCILGGVPKESGIIRLCG--------------- 421 (1156)
Q Consensus 357 ~i~~~~~~f~~~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKSTll~~i~g~~~~~~G~i~~~g--------------- 421 (1156)
.++++|++++|+ ++++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|
T Consensus 4 ~l~~~~l~~~y~---~~~~l~~vsl~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~ 80 (224)
T 2pcj_A 4 ILRAENIKKVIR---GYEILKGISLSVKKGEFVSIIGASGSGKSTLLYILGLLDAPTEGKVFLEGKEVDYTNEKELSLLR 80 (224)
T ss_dssp EEEEEEEEEEET---TEEEEEEEEEEEETTCEEEEEECTTSCHHHHHHHHTTSSCCSEEEEEETTEECCSSCHHHHHHHH
T ss_pred EEEEEeEEEEEC---CEeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCCCCHHHHHHHH
Confidence 489999999996 35799999999999999999999999999999999999999999999987
Q ss_pred --eEEEEecCCcCCC-ccHHHHhhcCCC---CC----HHHHHHHHHHhCCchhhhhCCCCCccccccCCCCCCHHHHHHH
Q 037346 422 --TKAYVAQSPWIQS-GKIEENILFGKE---MD----RERYERVLEACSLKKDLEVLPFGDQTIIGERGINLSGGQKQRI 491 (1156)
Q Consensus 422 --~~~~v~Q~~~~~~-~ti~eni~~~~~---~~----~~~~~~~~~~~~l~~~~~~~~~g~~t~v~~~g~~LSgGqkqRi 491 (1156)
.++|++|+|.++. .|++||+.++.. .. .++.+++++.+++.+.. .....+||||||||+
T Consensus 81 ~~~i~~v~q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-----------~~~~~~LSgGq~qrv 149 (224)
T 2pcj_A 81 NRKLGFVFQFHYLIPELTALENVIVPMLKMGKPKKEAKERGEYLLSELGLGDKL-----------SRKPYELSGGEQQRV 149 (224)
T ss_dssp HHHEEEECSSCCCCTTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTCTTCT-----------TCCGGGSCHHHHHHH
T ss_pred hCcEEEEecCcccCCCCCHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCchhh-----------hCChhhCCHHHHHHH
Confidence 2799999998775 599999987521 11 34566777777775433 244578999999999
Q ss_pred HHHHhhccCCCeeeeeCCCCCcCHHHHHHHHHHHHh--cCCCEEEEEccCCCccccCCEEEEEeCCeEEEccC
Q 037346 492 QIARPLYQDADIFLLDDPFSPVDDHTGAHLFKFCWV--SSSKTVIYATHQVEFLPAADLILVIKDGKITQAGK 562 (1156)
Q Consensus 492 ~lAral~~~~~illlDep~s~lD~~~~~~i~~~~~~--~~~~tvi~vtH~~~~~~~~d~i~~l~~G~i~~~g~ 562 (1156)
+|||||+.+|+++||||||++||+.+++.+.+.+.. .+|+|+|++||+++.+..||+|++|++|++++.|+
T Consensus 150 ~laral~~~p~lllLDEPt~~LD~~~~~~~~~~l~~l~~~g~tvi~vtHd~~~~~~~d~v~~l~~G~i~~~g~ 222 (224)
T 2pcj_A 150 AIARALANEPILLFADEPTGNLDSANTKRVMDIFLKINEGGTSIVMVTHERELAELTHRTLEMKDGKVVGEIT 222 (224)
T ss_dssp HHHHHTTTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCHHHHTTSSEEEEEETTEEEEEEE
T ss_pred HHHHHHHcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEcCCHHHHHhCCEEEEEECCEEEEEee
Confidence 999999999999999999999999999998876643 35899999999998887799999999999998875
|
| >1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.9e-41 Score=369.45 Aligned_cols=198 Identities=25% Similarity=0.384 Sum_probs=170.1
Q ss_pred cEEEeeeEEEeCCCCCCCccccceEEeeCCeEEEEEcCCCCChHHHHHHHhCCCCCCCcEEEEcCe--------------
Q 037346 357 AIEIIDGSFSWDFSSPNPTLRNINLKVFHGMRVAVCGTVGSGKSSCLSCILGGVPKESGIIRLCGT-------------- 422 (1156)
Q Consensus 357 ~i~~~~~~f~~~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKSTll~~i~g~~~~~~G~i~~~g~-------------- 422 (1156)
.++++|++++|+ ++++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.
T Consensus 6 ~l~~~~l~~~y~---~~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~ 82 (240)
T 1ji0_A 6 VLEVQSLHVYYG---AIHAIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQKGKIIFNGQDITNKPAHVINRMG 82 (240)
T ss_dssp EEEEEEEEEEET---TEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHTT
T ss_pred eEEEEeEEEEEC---CeeEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCCHHHHHhCC
Confidence 589999999996 357999999999999999999999999999999999999999999999882
Q ss_pred EEEEecCCcCCCc-cHHHHhhcCC-C-C--C--HHHHHHHHHHhC-CchhhhhCCCCCccccccCCCCCCHHHHHHHHHH
Q 037346 423 KAYVAQSPWIQSG-KIEENILFGK-E-M--D--RERYERVLEACS-LKKDLEVLPFGDQTIIGERGINLSGGQKQRIQIA 494 (1156)
Q Consensus 423 ~~~v~Q~~~~~~~-ti~eni~~~~-~-~--~--~~~~~~~~~~~~-l~~~~~~~~~g~~t~v~~~g~~LSgGqkqRi~lA 494 (1156)
++|+||+|.++.. |++||+.++. . . . .++.+++++.++ +.+ ..++++.+||||||||++||
T Consensus 83 i~~v~q~~~l~~~ltv~enl~~~~~~~~~~~~~~~~~~~~l~~~~~l~~-----------~~~~~~~~LSgGq~qrv~lA 151 (240)
T 1ji0_A 83 IALVPEGRRIFPELTVYENLMMGAYNRKDKEGIKRDLEWIFSLFPRLKE-----------RLKQLGGTLSGGEQQMLAIG 151 (240)
T ss_dssp EEEECSSCCCCTTSBHHHHHHGGGTTCCCSSHHHHHHHHHHHHCHHHHT-----------TTTSBSSSSCHHHHHHHHHH
T ss_pred EEEEecCCccCCCCcHHHHHHHhhhcCCCHHHHHHHHHHHHHHcccHhh-----------HhcCChhhCCHHHHHHHHHH
Confidence 7999999988876 9999999864 1 1 1 233455555552 432 23456789999999999999
Q ss_pred HhhccCCCeeeeeCCCCCcCHHHHHHHHHHHHh--cCCCEEEEEccCCCccc-cCCEEEEEeCCeEEEccChHHHHh
Q 037346 495 RPLYQDADIFLLDDPFSPVDDHTGAHLFKFCWV--SSSKTVIYATHQVEFLP-AADLILVIKDGKITQAGKYSDILN 568 (1156)
Q Consensus 495 ral~~~~~illlDep~s~lD~~~~~~i~~~~~~--~~~~tvi~vtH~~~~~~-~~d~i~~l~~G~i~~~g~~~~l~~ 568 (1156)
|||+.+|+++||||||++||+.+++.+.+.+.. .+|+|+|++||+++.+. .||+|++|++|++++.|+++++.+
T Consensus 152 raL~~~p~lllLDEPts~LD~~~~~~l~~~l~~~~~~g~tvi~vtHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~ 228 (240)
T 1ji0_A 152 RALMSRPKLLMMDEPSLGLAPILVSEVFEVIQKINQEGTTILLVEQNALGALKVAHYGYVLETGQIVLEGKASELLD 228 (240)
T ss_dssp HHHTTCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCCEEEEESCHHHHHHHCSEEEEEETTEEEEEEEHHHHHT
T ss_pred HHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEEcCHHHHhc
Confidence 999999999999999999999999998876643 36899999999998764 699999999999999999988864
|
| >4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.3e-41 Score=373.29 Aligned_cols=199 Identities=25% Similarity=0.371 Sum_probs=174.8
Q ss_pred ccEEEeeeEEEeCCCCCCCccccceEEeeCCeEEEEEcCCCCChHHHHHHHhCCCCCCCcEEEEcCe-------------
Q 037346 356 TAIEIIDGSFSWDFSSPNPTLRNINLKVFHGMRVAVCGTVGSGKSSCLSCILGGVPKESGIIRLCGT------------- 422 (1156)
Q Consensus 356 ~~i~~~~~~f~~~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKSTll~~i~g~~~~~~G~i~~~g~------------- 422 (1156)
..++++|+++.|+ ++++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+
T Consensus 10 ~~l~~~~l~~~~~---~~~vL~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~ 86 (266)
T 4g1u_C 10 ALLEASHLHYHVQ---QQALINDVSLHIASGEMVAIIGPNGAGKSTLLRLLTGYLSPSHGECHLLGQNLNSWQPKALART 86 (266)
T ss_dssp CEEEEEEEEEEET---TEEEEEEEEEEEETTCEEEEECCTTSCHHHHHHHHTSSSCCSSCEEEETTEETTTSCHHHHHHH
T ss_pred ceEEEEeEEEEeC---CeeEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEECCcCCHHHHhhe
Confidence 3699999999996 457999999999999999999999999999999999999999999999984
Q ss_pred EEEEecCCcC-CCccHHHHhhcCCC-----CCHHHHHHHHHHhCCchhhhhCCCCCccccccCCCCCCHHHHHHHHHHHh
Q 037346 423 KAYVAQSPWI-QSGKIEENILFGKE-----MDRERYERVLEACSLKKDLEVLPFGDQTIIGERGINLSGGQKQRIQIARP 496 (1156)
Q Consensus 423 ~~~v~Q~~~~-~~~ti~eni~~~~~-----~~~~~~~~~~~~~~l~~~~~~~~~g~~t~v~~~g~~LSgGqkqRi~lAra 496 (1156)
++|++|++.+ +..||+||+.++.. .+.++.+++++.+++.+..+ +...+||||||||++||||
T Consensus 87 i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-----------~~~~~LSgGq~QRv~iAra 155 (266)
T 4g1u_C 87 RAVMRQYSELAFPFSVSEVIQMGRAPYGGSQDRQALQQVMAQTDCLALAQ-----------RDYRVLSGGEQQRVQLARV 155 (266)
T ss_dssp EEEECSCCCCCSCCBHHHHHHGGGTTSCSTTHHHHHHHHHHHTTCSTTTT-----------SBGGGCCHHHHHHHHHHHH
T ss_pred EEEEecCCccCCCCCHHHHHHhhhhhcCcHHHHHHHHHHHHHcCChhHhc-----------CCcccCCHHHHHHHHHHHH
Confidence 6999999876 56799999998742 23566778888888765432 3446899999999999999
Q ss_pred hcc------CCCeeeeeCCCCCcCHHHHHHHHHHHHh---cCCCEEEEEccCCCccc-cCCEEEEEeCCeEEEccChHHH
Q 037346 497 LYQ------DADIFLLDDPFSPVDDHTGAHLFKFCWV---SSSKTVIYATHQVEFLP-AADLILVIKDGKITQAGKYSDI 566 (1156)
Q Consensus 497 l~~------~~~illlDep~s~lD~~~~~~i~~~~~~---~~~~tvi~vtH~~~~~~-~~d~i~~l~~G~i~~~g~~~~l 566 (1156)
|+. +|++||||||||+||+.++..+++.+.. ..++|+|+|||+++.+. .||+|++|++|++++.|+++++
T Consensus 156 L~~~~~~~~~p~lLllDEPts~LD~~~~~~i~~~l~~l~~~~~~tvi~vtHdl~~~~~~~d~v~vl~~G~i~~~g~~~~~ 235 (266)
T 4g1u_C 156 LAQLWQPQPTPRWLFLDEPTSALDLYHQQHTLRLLRQLTRQEPLAVCCVLHDLNLAALYADRIMLLAQGKLVACGTPEEV 235 (266)
T ss_dssp HHHTCCSSCCCEEEEECCCCSSCCHHHHHHHHHHHHHHHHHSSEEEEEECSCHHHHHHHCSEEEEEETTEEEEEECHHHH
T ss_pred HhcccccCCCCCEEEEeCccccCCHHHHHHHHHHHHHHHHcCCCEEEEEEcCHHHHHHhCCEEEEEECCEEEEEcCHHHH
Confidence 999 9999999999999999999998876643 33579999999999986 5999999999999999999998
Q ss_pred Hh
Q 037346 567 LN 568 (1156)
Q Consensus 567 ~~ 568 (1156)
.+
T Consensus 236 ~~ 237 (266)
T 4g1u_C 236 LN 237 (266)
T ss_dssp CC
T ss_pred hC
Confidence 75
|
| >1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3e-41 Score=371.73 Aligned_cols=195 Identities=21% Similarity=0.320 Sum_probs=169.7
Q ss_pred cEEEeeeEEEeCCCCCCCccccceEEeeCCeEEEEEcCCCCChHHHHHHHhCCCCCCCcEEEEcCe--------------
Q 037346 357 AIEIIDGSFSWDFSSPNPTLRNINLKVFHGMRVAVCGTVGSGKSSCLSCILGGVPKESGIIRLCGT-------------- 422 (1156)
Q Consensus 357 ~i~~~~~~f~~~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKSTll~~i~g~~~~~~G~i~~~g~-------------- 422 (1156)
.++++|++++|+ ++++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.
T Consensus 7 ~l~i~~l~~~y~---~~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~ 83 (257)
T 1g6h_A 7 ILRTENIVKYFG---EFKALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVYFENKDITNKEPAELYHYG 83 (257)
T ss_dssp EEEEEEEEEEET---TEEEEEEECCEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHHT
T ss_pred EEEEeeeEEEEC---CEeeEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHHHhCC
Confidence 599999999995 357999999999999999999999999999999999999999999999882
Q ss_pred EEEEecCCcCCC-ccHHHHhhcCCCC----------------C----HHHHHHHHHHhCCchhhhhCCCCCccccccCCC
Q 037346 423 KAYVAQSPWIQS-GKIEENILFGKEM----------------D----RERYERVLEACSLKKDLEVLPFGDQTIIGERGI 481 (1156)
Q Consensus 423 ~~~v~Q~~~~~~-~ti~eni~~~~~~----------------~----~~~~~~~~~~~~l~~~~~~~~~g~~t~v~~~g~ 481 (1156)
++|++|+|.++. .||+||+.++... + .++.+++++.+++.+.. ++.+.
T Consensus 84 i~~v~q~~~l~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-----------~~~~~ 152 (257)
T 1g6h_A 84 IVRTFQTPQPLKEMTVLENLLIGEICPGESPLNSLFYKKWIPKEEEMVEKAFKILEFLKLSHLY-----------DRKAG 152 (257)
T ss_dssp EEECCCCCGGGGGSBHHHHHHGGGTSTTSCHHHHHHHCSSCCCCHHHHHHHHHHHHHTTCGGGT-----------TSBGG
T ss_pred EEEEccCCccCCCCcHHHHHHHHHhhhccCcccccccccccCCHHHHHHHHHHHHHHcCCchhh-----------CCCch
Confidence 799999998775 5999999886321 1 23456677777765433 34567
Q ss_pred CCCHHHHHHHHHHHhhccCCCeeeeeCCCCCcCHHHHHHHHHHHHh--cCCCEEEEEccCCCccc-cCCEEEEEeCCeEE
Q 037346 482 NLSGGQKQRIQIARPLYQDADIFLLDDPFSPVDDHTGAHLFKFCWV--SSSKTVIYATHQVEFLP-AADLILVIKDGKIT 558 (1156)
Q Consensus 482 ~LSgGqkqRi~lAral~~~~~illlDep~s~lD~~~~~~i~~~~~~--~~~~tvi~vtH~~~~~~-~~d~i~~l~~G~i~ 558 (1156)
+|||||||||+|||||+.+|+++||||||++||+.+++.+.+.+.. .+|+|+|++||+++.+. .||+|++|++|+++
T Consensus 153 ~LSgGqkQrv~iAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tvi~vtHd~~~~~~~~d~v~~l~~G~i~ 232 (257)
T 1g6h_A 153 ELSGGQMKLVEIGRALMTNPKMIVMDEPIAGVAPGLAHDIFNHVLELKAKGITFLIIEHRLDIVLNYIDHLYVMFNGQII 232 (257)
T ss_dssp GSCHHHHHHHHHHHHHHTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCCSTTGGGCSEEEEEETTEEE
T ss_pred hCCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEEEEECCEEE
Confidence 8999999999999999999999999999999999999998876643 35899999999999875 59999999999999
Q ss_pred EccChHH
Q 037346 559 QAGKYSD 565 (1156)
Q Consensus 559 ~~g~~~~ 565 (1156)
+.|++++
T Consensus 233 ~~g~~~~ 239 (257)
T 1g6h_A 233 AEGRGEE 239 (257)
T ss_dssp EEEESHH
T ss_pred EEeCHHH
Confidence 9999888
|
| >2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=100.00 E-value=8.3e-41 Score=369.81 Aligned_cols=202 Identities=26% Similarity=0.395 Sum_probs=175.2
Q ss_pred cEEEeeeEEEeCCCCC--CCccccceEEeeCCeEEEEEcCCCCChHHHHHHHhCCCCCCCcEEEEcCe----------EE
Q 037346 357 AIEIIDGSFSWDFSSP--NPTLRNINLKVFHGMRVAVCGTVGSGKSSCLSCILGGVPKESGIIRLCGT----------KA 424 (1156)
Q Consensus 357 ~i~~~~~~f~~~~~~~--~~~l~~i~l~i~~g~~~~ivG~~GsGKSTll~~i~g~~~~~~G~i~~~g~----------~~ 424 (1156)
.++++|++++|+.... +++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|. ++
T Consensus 2 ~l~~~~l~~~y~~~~~~~~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLl~~i~Gl~~p~~G~I~~~g~~~~~~~~~~~i~ 81 (266)
T 2yz2_A 2 RIEVVNVSHIFHRGTPLEKKALENVSLVINEGECLLVAGNTGSGKSTLLQIVAGLIEPTSGDVLYDGERKKGYEIRRNIG 81 (266)
T ss_dssp CEEEEEEEEEESTTSTTCEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECCHHHHGGGEE
T ss_pred EEEEEEEEEEecCCCccccceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEECCEECchHHhhhhEE
Confidence 3789999999962111 46999999999999999999999999999999999999999999999983 79
Q ss_pred EEecCC--cCCCccHHHHhhcCCC------CCHHHHHHHHHHhCCc--hhhhhCCCCCccccccCCCCCCHHHHHHHHHH
Q 037346 425 YVAQSP--WIQSGKIEENILFGKE------MDRERYERVLEACSLK--KDLEVLPFGDQTIIGERGINLSGGQKQRIQIA 494 (1156)
Q Consensus 425 ~v~Q~~--~~~~~ti~eni~~~~~------~~~~~~~~~~~~~~l~--~~~~~~~~g~~t~v~~~g~~LSgGqkqRi~lA 494 (1156)
|++|+| .++..|++||+.++.. ...++++++++.+++. +..+. ...+||||||||++||
T Consensus 82 ~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~-----------~~~~LSgGq~qRv~lA 150 (266)
T 2yz2_A 82 IAFQYPEDQFFAERVFDEVAFAVKNFYPDRDPVPLVKKAMEFVGLDFDSFKDR-----------VPFFLSGGEKRRVAIA 150 (266)
T ss_dssp EECSSGGGGCCCSSHHHHHHHTTTTTCTTSCSHHHHHHHHHHTTCCHHHHTTC-----------CGGGSCHHHHHHHHHH
T ss_pred EEeccchhhcCCCcHHHHHHHHHHhcCCHHHHHHHHHHHHHHcCcCCcccccC-----------ChhhCCHHHHHHHHHH
Confidence 999997 4677899999998632 2246788899999987 55443 3468999999999999
Q ss_pred HhhccCCCeeeeeCCCCCcCHHHHHHHHHHHHh--cCCCEEEEEccCCCcccc-CCEEEEEeCCeEEEccChHHHHhc
Q 037346 495 RPLYQDADIFLLDDPFSPVDDHTGAHLFKFCWV--SSSKTVIYATHQVEFLPA-ADLILVIKDGKITQAGKYSDILNS 569 (1156)
Q Consensus 495 ral~~~~~illlDep~s~lD~~~~~~i~~~~~~--~~~~tvi~vtH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~~~ 569 (1156)
|||+.+|+++||||||++||+.+++.+.+.+.. .+|+|+|++||+++.+.. ||++++|++|++++.|+++++...
T Consensus 151 raL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tii~vtHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~ 228 (266)
T 2yz2_A 151 SVIVHEPDILILDEPLVGLDREGKTDLLRIVEKWKTLGKTVILISHDIETVINHVDRVVVLEKGKKVFDGTRMEFLEK 228 (266)
T ss_dssp HHHTTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCCTTTGGGCSEEEEEETTEEEEEEEHHHHHHH
T ss_pred HHHHcCCCEEEEcCccccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHhcC
Confidence 999999999999999999999999999876643 358999999999999875 999999999999999999888653
|
| >1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=100.00 E-value=3.5e-41 Score=371.70 Aligned_cols=199 Identities=26% Similarity=0.421 Sum_probs=173.8
Q ss_pred cEEEeeeEEEeCCCCCCCccccceEEeeCCeEEEEEcCCCCChHHHHHHHhCCCCCCCcEEEEcCe--------------
Q 037346 357 AIEIIDGSFSWDFSSPNPTLRNINLKVFHGMRVAVCGTVGSGKSSCLSCILGGVPKESGIIRLCGT-------------- 422 (1156)
Q Consensus 357 ~i~~~~~~f~~~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKSTll~~i~g~~~~~~G~i~~~g~-------------- 422 (1156)
.++++|++++|+ +.++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.
T Consensus 6 ~l~i~~l~~~y~---~~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~ 82 (262)
T 1b0u_A 6 KLHVIDLHKRYG---GHEVLKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEKPSEGAIIVNGQNINLVRDKDGQLKV 82 (262)
T ss_dssp CEEEEEEEEEET---TEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEECCEEECTTSSEEE
T ss_pred eEEEeeEEEEEC---CEEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEccccccccccccc
Confidence 599999999995 357999999999999999999999999999999999999999999999872
Q ss_pred ------------EEEEecCCcCCCc-cHHHHhhcCC----CCC----HHHHHHHHHHhCCchh-hhhCCCCCccccccCC
Q 037346 423 ------------KAYVAQSPWIQSG-KIEENILFGK----EMD----RERYERVLEACSLKKD-LEVLPFGDQTIIGERG 480 (1156)
Q Consensus 423 ------------~~~v~Q~~~~~~~-ti~eni~~~~----~~~----~~~~~~~~~~~~l~~~-~~~~~~g~~t~v~~~g 480 (1156)
++||+|++.++.. ||+||+.++. ... +++.+++++.++|.+. .+ +..
T Consensus 83 ~~~~~~~~~~~~i~~v~Q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~-----------~~~ 151 (262)
T 1b0u_A 83 ADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVLGLSKHDARERALKYLAKVGIDERAQG-----------KYP 151 (262)
T ss_dssp SCHHHHHHHHHHEEEECSSCCCCTTSCHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTCCHHHHT-----------SCG
T ss_pred cChhhHHHHhcceEEEecCcccCCCCcHHHHHHhhHHHhcCCCHHHHHHHHHHHHHHcCCCchhhc-----------CCc
Confidence 7999999988765 9999998842 122 3456778888888765 43 345
Q ss_pred CCCCHHHHHHHHHHHhhccCCCeeeeeCCCCCcCHHHHHHHHHHHHh--cCCCEEEEEccCCCccc-cCCEEEEEeCCeE
Q 037346 481 INLSGGQKQRIQIARPLYQDADIFLLDDPFSPVDDHTGAHLFKFCWV--SSSKTVIYATHQVEFLP-AADLILVIKDGKI 557 (1156)
Q Consensus 481 ~~LSgGqkqRi~lAral~~~~~illlDep~s~lD~~~~~~i~~~~~~--~~~~tvi~vtH~~~~~~-~~d~i~~l~~G~i 557 (1156)
.+|||||||||+|||||+.+|+++||||||++||+.+++.+.+.+.. .+|+|+|++||+++.+. .||+|++|++|++
T Consensus 152 ~~LSgGq~qRv~lAraL~~~p~lllLDEPts~LD~~~~~~~~~~l~~l~~~g~tvi~vtHd~~~~~~~~d~v~~l~~G~i 231 (262)
T 1b0u_A 152 VHLSGGQQQRVSIARALAMEPDVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHEMGFARHVSSHVIFLHQGKI 231 (262)
T ss_dssp GGSCHHHHHHHHHHHHHHTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHTTCCEEEECSCHHHHHHHCSEEEEEETTEE
T ss_pred ccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEE
Confidence 68999999999999999999999999999999999999998876643 35899999999999886 5999999999999
Q ss_pred EEccChHHHHhc
Q 037346 558 TQAGKYSDILNS 569 (1156)
Q Consensus 558 ~~~g~~~~l~~~ 569 (1156)
++.|+++++.+.
T Consensus 232 ~~~g~~~~~~~~ 243 (262)
T 1b0u_A 232 EEEGDPEQVFGN 243 (262)
T ss_dssp EEEECHHHHHHS
T ss_pred EEeCCHHHHHhC
Confidence 999999998754
|
| >1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=100.00 E-value=5.2e-41 Score=368.03 Aligned_cols=199 Identities=22% Similarity=0.312 Sum_probs=174.1
Q ss_pred ccEEEeeeEEEeCCCCCCCccccceEEeeCCeEEEEEcCCCCChHHHHHHHhCCCCCCCcEEEEcCe------------E
Q 037346 356 TAIEIIDGSFSWDFSSPNPTLRNINLKVFHGMRVAVCGTVGSGKSSCLSCILGGVPKESGIIRLCGT------------K 423 (1156)
Q Consensus 356 ~~i~~~~~~f~~~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKSTll~~i~g~~~~~~G~i~~~g~------------~ 423 (1156)
+.|+++|++++|+ ++++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|. +
T Consensus 14 ~~l~i~~l~~~y~---~~~vl~~vsl~i~~Gei~~l~G~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~~~~~~~~~~~~i 90 (256)
T 1vpl_A 14 GAVVVKDLRKRIG---KKEILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPSSGIVTVFGKNVVEEPHEVRKLI 90 (256)
T ss_dssp CCEEEEEEEEEET---TEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEETTTCHHHHHTTE
T ss_pred CeEEEEEEEEEEC---CEEEEEeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCccHHHHhhcE
Confidence 4699999999995 357999999999999999999999999999999999999999999999883 7
Q ss_pred EEEecCCcCCCc-cHHHHhhcCC---CCC----HHHHHHHHHHhCCchhhhhCCCCCccccccCCCCCCHHHHHHHHHHH
Q 037346 424 AYVAQSPWIQSG-KIEENILFGK---EMD----RERYERVLEACSLKKDLEVLPFGDQTIIGERGINLSGGQKQRIQIAR 495 (1156)
Q Consensus 424 ~~v~Q~~~~~~~-ti~eni~~~~---~~~----~~~~~~~~~~~~l~~~~~~~~~g~~t~v~~~g~~LSgGqkqRi~lAr 495 (1156)
+|+||+|.++.. |++||+.++. ... .++.+++++.++|.+..+ +++.+||||||||++|||
T Consensus 91 ~~v~q~~~l~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~-----------~~~~~LSgGq~qRv~lAr 159 (256)
T 1vpl_A 91 SYLPEEAGAYRNMQGIEYLRFVAGFYASSSSEIEEMVERATEIAGLGEKIK-----------DRVSTYSKGMVRKLLIAR 159 (256)
T ss_dssp EEECTTCCCCTTSBHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCGGGGG-----------SBGGGCCHHHHHHHHHHH
T ss_pred EEEcCCCCCCCCCcHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCchHhc-----------CChhhCCHHHHHHHHHHH
Confidence 999999988765 9999998742 122 245677888888865443 345689999999999999
Q ss_pred hhccCCCeeeeeCCCCCcCHHHHHHHHHHHHh--cCCCEEEEEccCCCcccc-CCEEEEEeCCeEEEccChHHHHh
Q 037346 496 PLYQDADIFLLDDPFSPVDDHTGAHLFKFCWV--SSSKTVIYATHQVEFLPA-ADLILVIKDGKITQAGKYSDILN 568 (1156)
Q Consensus 496 al~~~~~illlDep~s~lD~~~~~~i~~~~~~--~~~~tvi~vtH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~~ 568 (1156)
||+.+|+++||||||++||+.+++.+.+.+.. .+|+|+|++||+++.+.. ||++++|++|++++.|+++++.+
T Consensus 160 aL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tiiivtHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~ 235 (256)
T 1vpl_A 160 ALMVNPRLAILDEPTSGLDVLNAREVRKILKQASQEGLTILVSSHNMLEVEFLCDRIALIHNGTIVETGTVEELKE 235 (256)
T ss_dssp HHTTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEEECCHHHHTTTCSEEEEEETTEEEEEEEHHHHHH
T ss_pred HHHcCCCEEEEeCCccccCHHHHHHHHHHHHHHHhCCCEEEEEcCCHHHHHHHCCEEEEEECCEEEEecCHHHHHH
Confidence 99999999999999999999999998876643 358999999999998865 99999999999999999988864
|
| >1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.5e-41 Score=383.42 Aligned_cols=202 Identities=25% Similarity=0.387 Sum_probs=176.0
Q ss_pred ccEEEeeeEEEeCCCCCCCccccceEEeeCCeEEEEEcCCCCChHHHHHHHhCCCCCCCcEEEEcCe-----------EE
Q 037346 356 TAIEIIDGSFSWDFSSPNPTLRNINLKVFHGMRVAVCGTVGSGKSSCLSCILGGVPKESGIIRLCGT-----------KA 424 (1156)
Q Consensus 356 ~~i~~~~~~f~~~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKSTll~~i~g~~~~~~G~i~~~g~-----------~~ 424 (1156)
..++++|++++|+ ++.++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+ ++
T Consensus 13 ~~l~~~~l~~~y~--g~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~~r~ig 90 (355)
T 1z47_A 13 MTIEFVGVEKIYP--GGARSVRGVSFQIREGEMVGLLGPSGSGKTTILRLIAGLERPTKGDVWIGGKRVTDLPPQKRNVG 90 (355)
T ss_dssp EEEEEEEEEECCT--TSTTCEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTCCGGGSSEE
T ss_pred ceEEEEEEEEEEc--CCCEEEeeeEEEECCCCEEEEECCCCCcHHHHHHHHhCCCCCCccEEEECCEECCcCChhhCcEE
Confidence 4699999999993 1357999999999999999999999999999999999999999999999983 79
Q ss_pred EEecCCcCCC-ccHHHHhhcCCC---CC----HHHHHHHHHHhCCchhhhhCCCCCccccccCCCCCCHHHHHHHHHHHh
Q 037346 425 YVAQSPWIQS-GKIEENILFGKE---MD----RERYERVLEACSLKKDLEVLPFGDQTIIGERGINLSGGQKQRIQIARP 496 (1156)
Q Consensus 425 ~v~Q~~~~~~-~ti~eni~~~~~---~~----~~~~~~~~~~~~l~~~~~~~~~g~~t~v~~~g~~LSgGqkqRi~lAra 496 (1156)
||+|++.+|. .||+|||.|+.. .. +++.+++++.++|.+..+ ++..+|||||||||+||||
T Consensus 91 ~v~Q~~~l~~~ltv~eni~~~l~~~~~~~~~~~~~v~~~l~~~gL~~~~~-----------r~~~~LSGGq~QRvalArA 159 (355)
T 1z47_A 91 LVFQNYALFQHMTVYDNVSFGLREKRVPKDEMDARVRELLRFMRLESYAN-----------RFPHELSGGQQQRVALARA 159 (355)
T ss_dssp EECGGGCCCTTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTCGGGTT-----------SCGGGSCHHHHHHHHHHHH
T ss_pred EEecCcccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhHhc-----------CCcccCCHHHHHHHHHHHH
Confidence 9999998876 499999998631 22 346677888888866544 3446899999999999999
Q ss_pred hccCCCeeeeeCCCCCcCHHHHHHHHHHHHh---cCCCEEEEEccCCCccc-cCCEEEEEeCCeEEEccChHHHHhcC
Q 037346 497 LYQDADIFLLDDPFSPVDDHTGAHLFKFCWV---SSSKTVIYATHQVEFLP-AADLILVIKDGKITQAGKYSDILNSG 570 (1156)
Q Consensus 497 l~~~~~illlDep~s~lD~~~~~~i~~~~~~---~~~~tvi~vtH~~~~~~-~~d~i~~l~~G~i~~~g~~~~l~~~~ 570 (1156)
|+.+|++||||||||+||+..++.+.+.+.. ..|+|+|+|||+++.+. .||+|++|++|++++.|+++++.+..
T Consensus 160 L~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~a~~~adri~vl~~G~i~~~g~~~~l~~~p 237 (355)
T 1z47_A 160 LAPRPQVLLFDEPFAAIDTQIRRELRTFVRQVHDEMGVTSVFVTHDQEEALEVADRVLVLHEGNVEQFGTPEEVYEKP 237 (355)
T ss_dssp HTTCCSEEEEESTTCCSSHHHHHHHHHHHHHHHHHHTCEEEEECSCHHHHHHHCSEEEEEETTEEEEEECHHHHHHSC
T ss_pred HHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEECCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhCc
Confidence 9999999999999999999999998876643 23899999999998875 59999999999999999999997653
|
| >2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=100.00 E-value=5.4e-41 Score=383.01 Aligned_cols=200 Identities=25% Similarity=0.316 Sum_probs=176.0
Q ss_pred cEEEeeeEEEeCCCCCCCccccceEEeeCCeEEEEEcCCCCChHHHHHHHhCCCCCCCcEEEEcCe-----------EEE
Q 037346 357 AIEIIDGSFSWDFSSPNPTLRNINLKVFHGMRVAVCGTVGSGKSSCLSCILGGVPKESGIIRLCGT-----------KAY 425 (1156)
Q Consensus 357 ~i~~~~~~f~~~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKSTll~~i~g~~~~~~G~i~~~g~-----------~~~ 425 (1156)
.++++|++++|+ +.++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|+ ++|
T Consensus 3 ~l~~~~l~~~y~---~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~~r~ig~ 79 (359)
T 2yyz_A 3 SIRVVNLKKYFG---KVKAVDGVSFEVKDGEFVALLGPSGCGKTTTLLMLAGIYKPTSGEIYFDDVLVNDIPPKYREVGM 79 (359)
T ss_dssp CEEEEEEEEEET---TEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCGGGTTEEE
T ss_pred EEEEEEEEEEEC---CEEEEeeeEEEEcCCCEEEEEcCCCchHHHHHHHHHCCCCCCccEEEECCEECCCCChhhCcEEE
Confidence 489999999995 357999999999999999999999999999999999999999999999983 799
Q ss_pred EecCCcCCCc-cHHHHhhcCCCC---C----HHHHHHHHHHhCCchhhhhCCCCCccccccCCCCCCHHHHHHHHHHHhh
Q 037346 426 VAQSPWIQSG-KIEENILFGKEM---D----RERYERVLEACSLKKDLEVLPFGDQTIIGERGINLSGGQKQRIQIARPL 497 (1156)
Q Consensus 426 v~Q~~~~~~~-ti~eni~~~~~~---~----~~~~~~~~~~~~l~~~~~~~~~g~~t~v~~~g~~LSgGqkqRi~lAral 497 (1156)
|+|++.+|.. ||+|||.|+... . +++.+++++.++|.+..++ +..+|||||||||+|||||
T Consensus 80 v~Q~~~l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r-----------~~~~LSgGq~QRvalArAL 148 (359)
T 2yyz_A 80 VFQNYALYPHMTVFENIAFPLRARRISKDEVEKRVVEIARKLLIDNLLDR-----------KPTQLSGGQQQRVALARAL 148 (359)
T ss_dssp ECSSCCCCTTSCHHHHHHGGGSSSCSHHHHTTHHHHHHHHHTTCGGGTTS-----------CGGGSCHHHHHHHHHHHHH
T ss_pred EecCcccCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchHhcC-----------ChhhCCHHHHHHHHHHHHH
Confidence 9999988764 999999997532 1 2467788888888765543 4468999999999999999
Q ss_pred ccCCCeeeeeCCCCCcCHHHHHHHHHHHHh---cCCCEEEEEccCCCccc-cCCEEEEEeCCeEEEccChHHHHhcC
Q 037346 498 YQDADIFLLDDPFSPVDDHTGAHLFKFCWV---SSSKTVIYATHQVEFLP-AADLILVIKDGKITQAGKYSDILNSG 570 (1156)
Q Consensus 498 ~~~~~illlDep~s~lD~~~~~~i~~~~~~---~~~~tvi~vtH~~~~~~-~~d~i~~l~~G~i~~~g~~~~l~~~~ 570 (1156)
+.+|++||||||||+||+..++.+.+.+.. ..|.|+|+|||+++.+. .||+|++|++|++++.|+++++.+..
T Consensus 149 ~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~~~~~adri~vl~~G~i~~~g~~~~l~~~p 225 (359)
T 2yyz_A 149 VKQPKVLLFDEPLSNLDANLRMIMRAEIKHLQQELGITSVYVTHDQAEAMTMASRIAVFNQGKLVQYGTPDEVYDSP 225 (359)
T ss_dssp TTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHCCEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHHHSC
T ss_pred HcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEEECCEEEEeCCHHHHHhCc
Confidence 999999999999999999999998876643 23899999999998874 69999999999999999999998654
|
| >2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=100.00 E-value=6.1e-41 Score=383.01 Aligned_cols=200 Identities=30% Similarity=0.348 Sum_probs=174.5
Q ss_pred cEEEeeeEEEeCCCCCCCccccceEEeeCCeEEEEEcCCCCChHHHHHHHhCCCCCCCcEEEEcCe-----------EEE
Q 037346 357 AIEIIDGSFSWDFSSPNPTLRNINLKVFHGMRVAVCGTVGSGKSSCLSCILGGVPKESGIIRLCGT-----------KAY 425 (1156)
Q Consensus 357 ~i~~~~~~f~~~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKSTll~~i~g~~~~~~G~i~~~g~-----------~~~ 425 (1156)
.++++|++++|+ +.++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+ ++|
T Consensus 3 ~l~~~~l~~~y~---~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~~r~ig~ 79 (362)
T 2it1_A 3 EIKLENIVKKFG---NFTALNNINLKIKDGEFMALLGPSGSGKSTLLYTIAGIYKPTSGKIYFDEKDVTELPPKDRNVGL 79 (362)
T ss_dssp CEEEEEEEEESS---SSEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCGGGTTEEE
T ss_pred EEEEEeEEEEEC---CEEEEEeeEEEECCCCEEEEECCCCchHHHHHHHHhcCCCCCceEEEECCEECCcCCHhHCcEEE
Confidence 489999999995 357999999999999999999999999999999999999999999999983 799
Q ss_pred EecCCcCCCc-cHHHHhhcCCC---CC----HHHHHHHHHHhCCchhhhhCCCCCccccccCCCCCCHHHHHHHHHHHhh
Q 037346 426 VAQSPWIQSG-KIEENILFGKE---MD----RERYERVLEACSLKKDLEVLPFGDQTIIGERGINLSGGQKQRIQIARPL 497 (1156)
Q Consensus 426 v~Q~~~~~~~-ti~eni~~~~~---~~----~~~~~~~~~~~~l~~~~~~~~~g~~t~v~~~g~~LSgGqkqRi~lAral 497 (1156)
|+|++.+|.. ||+|||.|+.. .. +++.+++++.++|.+..+ ++..+|||||||||+|||||
T Consensus 80 v~Q~~~l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~-----------r~~~~LSGGq~QRvalArAL 148 (362)
T 2it1_A 80 VFQNWALYPHMTVYKNIAFPLELRKAPREEIDKKVREVAKMLHIDKLLN-----------RYPWQLSGGQQQRVAIARAL 148 (362)
T ss_dssp ECTTCCCCTTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTCTTCTT-----------CCGGGSCHHHHHHHHHHHHH
T ss_pred EecCcccCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchHhh-----------CChhhCCHHHHHHHHHHHHH
Confidence 9999988764 99999998631 22 245677888888765443 34568999999999999999
Q ss_pred ccCCCeeeeeCCCCCcCHHHHHHHHHHHHh---cCCCEEEEEccCCCccc-cCCEEEEEeCCeEEEccChHHHHhcC
Q 037346 498 YQDADIFLLDDPFSPVDDHTGAHLFKFCWV---SSSKTVIYATHQVEFLP-AADLILVIKDGKITQAGKYSDILNSG 570 (1156)
Q Consensus 498 ~~~~~illlDep~s~lD~~~~~~i~~~~~~---~~~~tvi~vtH~~~~~~-~~d~i~~l~~G~i~~~g~~~~l~~~~ 570 (1156)
+.+|+++|||||||+||+..+..+.+.+.. ..|.|+|+|||+++.+. .||+|++|++|++++.|+++++....
T Consensus 149 ~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~a~~~adri~vl~~G~i~~~g~~~~~~~~p 225 (362)
T 2it1_A 149 VKEPEVLLLDEPLSNLDALLRLEVRAELKRLQKELGITTVYVTHDQAEALAMADRIAVIREGEILQVGTPDEVYYKP 225 (362)
T ss_dssp TTCCSEEEEESGGGGSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHHHSC
T ss_pred HcCCCEEEEECccccCCHHHHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhCc
Confidence 999999999999999999999998876643 23899999999998864 69999999999999999999998653
|
| >1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-40 Score=382.08 Aligned_cols=200 Identities=24% Similarity=0.310 Sum_probs=170.7
Q ss_pred cEEEeeeEEEeCCCCCCCccccceEEeeCCeEEEEEcCCCCChHHHHHHHhCCCCCCCcEEEEcCe-----------EEE
Q 037346 357 AIEIIDGSFSWDFSSPNPTLRNINLKVFHGMRVAVCGTVGSGKSSCLSCILGGVPKESGIIRLCGT-----------KAY 425 (1156)
Q Consensus 357 ~i~~~~~~f~~~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKSTll~~i~g~~~~~~G~i~~~g~-----------~~~ 425 (1156)
.++++|++++|+ +.++|+|+||+|++||+++|+|||||||||||++|+|+++|++|+|.++|+ ++|
T Consensus 11 ~l~~~~l~~~y~---~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~~r~ig~ 87 (372)
T 1v43_A 11 EVKLENLTKRFG---NFTAVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPTEGRIYFGDRDVTYLPPKDRNISM 87 (372)
T ss_dssp CEEEEEEEEEET---TEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCGGGGTEEE
T ss_pred eEEEEEEEEEEC---CEEEEeeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCceEEEECCEECCCCChhhCcEEE
Confidence 499999999995 357999999999999999999999999999999999999999999999983 799
Q ss_pred EecCCcCCC-ccHHHHhhcCCCC---C----HHHHHHHHHHhCCchhhhhCCCCCccccccCCCCCCHHHHHHHHHHHhh
Q 037346 426 VAQSPWIQS-GKIEENILFGKEM---D----RERYERVLEACSLKKDLEVLPFGDQTIIGERGINLSGGQKQRIQIARPL 497 (1156)
Q Consensus 426 v~Q~~~~~~-~ti~eni~~~~~~---~----~~~~~~~~~~~~l~~~~~~~~~g~~t~v~~~g~~LSgGqkqRi~lAral 497 (1156)
|+|++.+|. .||+|||.|+... . +++.+++++.++|.+..++ +..+|||||||||+|||||
T Consensus 88 v~Q~~~l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r-----------~~~~LSGGq~QRvalArAL 156 (372)
T 1v43_A 88 VFQSYAVWPHMTVYENIAFPLKIKKFPKDEIDKRVRWAAELLQIEELLNR-----------YPAQLSGGQRQRVAVARAI 156 (372)
T ss_dssp EEC------CCCHHHHHHTTCC--CCCHHHHHHHHHHHHHHTTCGGGTTS-----------CTTTCCSSCHHHHHHHHHH
T ss_pred EecCcccCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhHhcC-----------ChhhCCHHHHHHHHHHHHH
Confidence 999998876 5999999998532 2 2456778888888765543 4468999999999999999
Q ss_pred ccCCCeeeeeCCCCCcCHHHHHHHHHHHHh---cCCCEEEEEccCCCccc-cCCEEEEEeCCeEEEccChHHHHhcC
Q 037346 498 YQDADIFLLDDPFSPVDDHTGAHLFKFCWV---SSSKTVIYATHQVEFLP-AADLILVIKDGKITQAGKYSDILNSG 570 (1156)
Q Consensus 498 ~~~~~illlDep~s~lD~~~~~~i~~~~~~---~~~~tvi~vtH~~~~~~-~~d~i~~l~~G~i~~~g~~~~l~~~~ 570 (1156)
+.+|++||||||||+||+..++.+.+.+.. ..|.|+|+|||+++.+. .||+|++|++|++++.|+++++....
T Consensus 157 ~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~a~~~adri~vl~~G~i~~~g~~~~l~~~p 233 (372)
T 1v43_A 157 VVEPDVLLMDEPLSNLDAKLRVAMRAEIKKLQQKLKVTTIYVTHDQVEAMTMGDRIAVMNRGQLLQIGSPTEVYLRP 233 (372)
T ss_dssp TTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHHHCC
T ss_pred hcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHHhCc
Confidence 999999999999999999999998876643 23899999999998874 69999999999999999999998654
|
| >3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-40 Score=379.22 Aligned_cols=198 Identities=33% Similarity=0.440 Sum_probs=174.5
Q ss_pred EEEeeeEEEeCCCCCCCccccceEEeeCCeEEEEEcCCCCChHHHHHHHhCCCCCCCcEEEEcCe-----------EEEE
Q 037346 358 IEIIDGSFSWDFSSPNPTLRNINLKVFHGMRVAVCGTVGSGKSSCLSCILGGVPKESGIIRLCGT-----------KAYV 426 (1156)
Q Consensus 358 i~~~~~~f~~~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKSTll~~i~g~~~~~~G~i~~~g~-----------~~~v 426 (1156)
++++|++++|+ +. +|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+ ++||
T Consensus 2 l~~~~l~~~y~---~~-~l~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~~~g~~i~~~~~~~r~ig~v 77 (348)
T 3d31_A 2 IEIESLSRKWK---NF-SLDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHVPDSGRILLDGKDVTDLSPEKHDIAFV 77 (348)
T ss_dssp EEEEEEEEECS---SC-EEEEEEEEECTTCEEEEECCCTHHHHHHHHHHHTSSCCSEEEEEETTEECTTSCHHHHTCEEE
T ss_pred EEEEEEEEEEC---CE-EEeeeEEEEcCCCEEEEECCCCccHHHHHHHHHcCCCCCCcEEEECCEECCCCchhhCcEEEE
Confidence 78999999995 35 999999999999999999999999999999999999999999999983 6999
Q ss_pred ecCCcCCCc-cHHHHhhcCCC----CCHHHHHHHHHHhCCchhhhhCCCCCccccccCCCCCCHHHHHHHHHHHhhccCC
Q 037346 427 AQSPWIQSG-KIEENILFGKE----MDRERYERVLEACSLKKDLEVLPFGDQTIIGERGINLSGGQKQRIQIARPLYQDA 501 (1156)
Q Consensus 427 ~Q~~~~~~~-ti~eni~~~~~----~~~~~~~~~~~~~~l~~~~~~~~~g~~t~v~~~g~~LSgGqkqRi~lAral~~~~ 501 (1156)
+|++.+|.. ||+|||.|+.. ...++.+++++.++|.+..+ ++..+|||||||||+|||||+.+|
T Consensus 78 ~Q~~~l~~~ltv~enl~~~~~~~~~~~~~~v~~~l~~~~L~~~~~-----------~~~~~LSgGq~QRvalAraL~~~P 146 (348)
T 3d31_A 78 YQNYSLFPHMNVKKNLEFGMRMKKIKDPKRVLDTARDLKIEHLLD-----------RNPLTLSGGEQQRVALARALVTNP 146 (348)
T ss_dssp CTTCCCCTTSCHHHHHHHHHHHHCCCCHHHHHHHHHHTTCTTTTT-----------SCGGGSCHHHHHHHHHHHHTTSCC
T ss_pred ecCcccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHcCCchHhc-----------CChhhCCHHHHHHHHHHHHHHcCC
Confidence 999988865 99999998631 12367788888888865543 345689999999999999999999
Q ss_pred CeeeeeCCCCCcCHHHHHHHHHHHHh---cCCCEEEEEccCCCccc-cCCEEEEEeCCeEEEccChHHHHhcC
Q 037346 502 DIFLLDDPFSPVDDHTGAHLFKFCWV---SSSKTVIYATHQVEFLP-AADLILVIKDGKITQAGKYSDILNSG 570 (1156)
Q Consensus 502 ~illlDep~s~lD~~~~~~i~~~~~~---~~~~tvi~vtH~~~~~~-~~d~i~~l~~G~i~~~g~~~~l~~~~ 570 (1156)
++||||||||+||+..++.+.+.+.. ..|+|+|+|||+++.+. .||+|++|++|++++.|+++++.+..
T Consensus 147 ~lLLLDEP~s~LD~~~~~~l~~~l~~l~~~~g~tii~vTHd~~~~~~~adri~vl~~G~i~~~g~~~~~~~~p 219 (348)
T 3d31_A 147 KILLLDEPLSALDPRTQENAREMLSVLHKKNKLTVLHITHDQTEARIMADRIAVVMDGKLIQVGKPEEIFEKP 219 (348)
T ss_dssp SEEEEESSSTTSCHHHHHHHHHHHHHHHHHTTCEEEEEESCHHHHHHHCSEEEEESSSCEEEEECHHHHHSSC
T ss_pred CEEEEECccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHHHhCc
Confidence 99999999999999999998876643 34899999999998864 69999999999999999999998653
|
| >2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-40 Score=362.30 Aligned_cols=195 Identities=25% Similarity=0.363 Sum_probs=168.8
Q ss_pred EEEeeeEEEeCCCCCCCccccceEEeeCCeEEEEEcCCCCChHHHHHHHhCCCCCCCcEEEEcCe-----------EEEE
Q 037346 358 IEIIDGSFSWDFSSPNPTLRNINLKVFHGMRVAVCGTVGSGKSSCLSCILGGVPKESGIIRLCGT-----------KAYV 426 (1156)
Q Consensus 358 i~~~~~~f~~~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKSTll~~i~g~~~~~~G~i~~~g~-----------~~~v 426 (1156)
++++|++++|+ + +|+|+||++++ |+++|+||||||||||+++|+|+++|++|+|.++|. ++|+
T Consensus 2 l~~~~l~~~y~---~--~l~~isl~i~~-e~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~i~~v 75 (240)
T 2onk_A 2 FLKVRAEKRLG---N--FRLNVDFEMGR-DYCVLLGPTGAGKSVFLELIAGIVKPDRGEVRLNGADITPLPPERRGIGFV 75 (240)
T ss_dssp CEEEEEEEEET---T--EEEEEEEEECS-SEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCTTTSCCBCC
T ss_pred EEEEEEEEEeC---C--EEeeeEEEECC-EEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCchhhCcEEEE
Confidence 68999999995 2 59999999999 999999999999999999999999999999999983 6999
Q ss_pred ecCCcCCCc-cHHHHhhcCCCC-----CHHHHHHHHHHhCCchhhhhCCCCCccccccCCCCCCHHHHHHHHHHHhhccC
Q 037346 427 AQSPWIQSG-KIEENILFGKEM-----DRERYERVLEACSLKKDLEVLPFGDQTIIGERGINLSGGQKQRIQIARPLYQD 500 (1156)
Q Consensus 427 ~Q~~~~~~~-ti~eni~~~~~~-----~~~~~~~~~~~~~l~~~~~~~~~g~~t~v~~~g~~LSgGqkqRi~lAral~~~ 500 (1156)
||+|.++.. |++||+.++... ++++.+++++.+++.+.. .+...+||||||||++|||||+.+
T Consensus 76 ~q~~~l~~~ltv~enl~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-----------~~~~~~LSgGqkqRv~lAral~~~ 144 (240)
T 2onk_A 76 PQDYALFPHLSVYRNIAYGLRNVERVERDRRVREMAEKLGIAHLL-----------DRKPARLSGGERQRVALARALVIQ 144 (240)
T ss_dssp CSSCCCCTTSCHHHHHHTTCTTSCHHHHHHHHHHHHHTTTCTTTT-----------TCCGGGSCHHHHHHHHHHHHHTTC
T ss_pred cCCCccCCCCcHHHHHHHHHHHcCCchHHHHHHHHHHHcCCHHHh-----------cCChhhCCHHHHHHHHHHHHHHcC
Confidence 999988765 999999997542 134556677777765433 244568999999999999999999
Q ss_pred CCeeeeeCCCCCcCHHHHHHHHHHHHh---cCCCEEEEEccCCCccc-cCCEEEEEeCCeEEEccChHHHHhc
Q 037346 501 ADIFLLDDPFSPVDDHTGAHLFKFCWV---SSSKTVIYATHQVEFLP-AADLILVIKDGKITQAGKYSDILNS 569 (1156)
Q Consensus 501 ~~illlDep~s~lD~~~~~~i~~~~~~---~~~~tvi~vtH~~~~~~-~~d~i~~l~~G~i~~~g~~~~l~~~ 569 (1156)
|+++||||||++||+.+++.+.+.+.. ..|+|+|++||+++.+. .||+|++|++|++++.|+++++.+.
T Consensus 145 p~lllLDEPts~LD~~~~~~~~~~l~~l~~~~g~tvi~vtHd~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~ 217 (240)
T 2onk_A 145 PRLLLLDEPLSAVDLKTKGVLMEELRFVQREFDVPILHVTHDLIEAAMLADEVAVMLNGRIVEKGKLKELFSA 217 (240)
T ss_dssp CSSBEEESTTSSCCHHHHHHHHHHHHHHHHHHTCCEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHHHS
T ss_pred CCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHHHhC
Confidence 999999999999999999998876643 23899999999998875 5999999999999999999988653
|
| >1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=8.7e-41 Score=381.90 Aligned_cols=200 Identities=27% Similarity=0.346 Sum_probs=175.2
Q ss_pred cEEEeeeEEEeCCCCCCC--ccccceEEeeCCeEEEEEcCCCCChHHHHHHHhCCCCCCCcEEEEcC-------------
Q 037346 357 AIEIIDGSFSWDFSSPNP--TLRNINLKVFHGMRVAVCGTVGSGKSSCLSCILGGVPKESGIIRLCG------------- 421 (1156)
Q Consensus 357 ~i~~~~~~f~~~~~~~~~--~l~~i~l~i~~g~~~~ivG~~GsGKSTll~~i~g~~~~~~G~i~~~g------------- 421 (1156)
.++++|++++|+ +.+ +|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|
T Consensus 3 ~l~i~~l~~~y~---~~~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~~~~~ 79 (353)
T 1oxx_K 3 RIIVKNVSKVFK---KGKVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPSTGELYFDDRLVASNGKLIVPP 79 (353)
T ss_dssp CEEEEEEEEEEG---GGTEEEEEEEEEEECTTCEEEEECSCHHHHHHHHHHHHTSSCCSEEEEEETTEEEEETTEESSCG
T ss_pred EEEEEeEEEEEC---CEeeeeEeceEEEECCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECcccccccCCh
Confidence 489999999996 356 99999999999999999999999999999999999999999999987
Q ss_pred ---eEEEEecCCcCCCc-cHHHHhhcCCCC---C----HHHHHHHHHHhCCchhhhhCCCCCccccccCCCCCCHHHHHH
Q 037346 422 ---TKAYVAQSPWIQSG-KIEENILFGKEM---D----RERYERVLEACSLKKDLEVLPFGDQTIIGERGINLSGGQKQR 490 (1156)
Q Consensus 422 ---~~~~v~Q~~~~~~~-ti~eni~~~~~~---~----~~~~~~~~~~~~l~~~~~~~~~g~~t~v~~~g~~LSgGqkqR 490 (1156)
.++||+|++.+|.. ||+|||.|+... . +++.+++++.++|.+..+ +...+||||||||
T Consensus 80 ~~r~ig~v~Q~~~l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~-----------~~~~~LSGGq~QR 148 (353)
T 1oxx_K 80 EDRKIGMVFQTWALYPNLTAFENIAFPLTNMKMSKEEIRKRVEEVAKILDIHHVLN-----------HFPRELSGAQQQR 148 (353)
T ss_dssp GGSCEEEEETTSCCCTTSCHHHHHHGGGTTSSCCHHHHHHHHHHHHHHTTCGGGTT-----------SCGGGSCHHHHHH
T ss_pred hhCCEEEEeCCCccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchHhc-----------CChhhCCHHHHHH
Confidence 26999999988765 999999997532 2 345677888888876544 3446899999999
Q ss_pred HHHHHhhccCCCeeeeeCCCCCcCHHHHHHHHHHHHh---cCCCEEEEEccCCCccc-cCCEEEEEeCCeEEEccChHHH
Q 037346 491 IQIARPLYQDADIFLLDDPFSPVDDHTGAHLFKFCWV---SSSKTVIYATHQVEFLP-AADLILVIKDGKITQAGKYSDI 566 (1156)
Q Consensus 491 i~lAral~~~~~illlDep~s~lD~~~~~~i~~~~~~---~~~~tvi~vtH~~~~~~-~~d~i~~l~~G~i~~~g~~~~l 566 (1156)
|+|||||+.+|++||||||||+||+..++.+.+.+.. ..|+|+|+|||+++.+. .||+|++|++|++++.|+++++
T Consensus 149 valAraL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~~~~~adri~vl~~G~i~~~g~~~~l 228 (353)
T 1oxx_K 149 VALARALVKDPSLLLLDEPFSNLDARMRDSARALVKEVQSRLGVTLLVVSHDPADIFAIADRVGVLVKGKLVQVGKPEDL 228 (353)
T ss_dssp HHHHHHHTTCCSEEEEESTTTTSCGGGHHHHHHHHHHHHHHHCCEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHH
T ss_pred HHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHH
Confidence 9999999999999999999999999999998876643 23899999999998875 5999999999999999999999
Q ss_pred HhcC
Q 037346 567 LNSG 570 (1156)
Q Consensus 567 ~~~~ 570 (1156)
....
T Consensus 229 ~~~p 232 (353)
T 1oxx_K 229 YDNP 232 (353)
T ss_dssp HHSC
T ss_pred HhCc
Confidence 8653
|
| >2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.5e-40 Score=364.45 Aligned_cols=198 Identities=25% Similarity=0.329 Sum_probs=172.5
Q ss_pred cEEEeeeEEEeCCCCCCCccccceEEeeCCeEEEEEcCCCCChHHHHHHHhCCCCCCCcEEEEcCeEEEEecCCcCC-Cc
Q 037346 357 AIEIIDGSFSWDFSSPNPTLRNINLKVFHGMRVAVCGTVGSGKSSCLSCILGGVPKESGIIRLCGTKAYVAQSPWIQ-SG 435 (1156)
Q Consensus 357 ~i~~~~~~f~~~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKSTll~~i~g~~~~~~G~i~~~g~~~~v~Q~~~~~-~~ 435 (1156)
.++++|++++|+. ++++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.+...++|+||+|.++ ..
T Consensus 4 ~l~i~~l~~~y~~--~~~vl~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~~~i~~v~q~~~~~~~~ 81 (253)
T 2nq2_C 4 ALSVENLGFYYQA--ENFLFQQLNFDLNKGDILAVLGQNGCGKSTLLDLLLGIHRPIQGKIEVYQSIGFVPQFFSSPFAY 81 (253)
T ss_dssp EEEEEEEEEEETT--TTEEEEEEEEEEETTCEEEEECCSSSSHHHHHHHHTTSSCCSEEEEEECSCEEEECSCCCCSSCC
T ss_pred eEEEeeEEEEeCC--CCeEEEEEEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEEeccEEEEcCCCccCCCC
Confidence 4899999999951 35799999999999999999999999999999999999999999999888899999999876 56
Q ss_pred cHHHHhhcCCC--------CC---HHHHHHHHHHhCCchhhhhCCCCCccccccCCCCCCHHHHHHHHHHHhhccCCCee
Q 037346 436 KIEENILFGKE--------MD---RERYERVLEACSLKKDLEVLPFGDQTIIGERGINLSGGQKQRIQIARPLYQDADIF 504 (1156)
Q Consensus 436 ti~eni~~~~~--------~~---~~~~~~~~~~~~l~~~~~~~~~g~~t~v~~~g~~LSgGqkqRi~lAral~~~~~il 504 (1156)
||+||+.++.. .. +++.+++++.+++.+..+ +.+.+||||||||++|||||+.+|+++
T Consensus 82 tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-----------~~~~~LSgGq~qrv~lAraL~~~p~ll 150 (253)
T 2nq2_C 82 SVLDIVLMGRSTHINTFAKPKSHDYQVAMQALDYLNLTHLAK-----------REFTSLSGGQRQLILIARAIASECKLI 150 (253)
T ss_dssp BHHHHHHGGGGGGSCTTCCCCHHHHHHHHHHHHHTTCGGGTT-----------SBGGGSCHHHHHHHHHHHHHHTTCSEE
T ss_pred CHHHHHHHhhhhhcccccCCCHHHHHHHHHHHHHcCChHHhc-----------CChhhCCHHHHHHHHHHHHHHcCCCEE
Confidence 99999998631 11 245677888888765433 345789999999999999999999999
Q ss_pred eeeCCCCCcCHHHHHHHHHHHHh--cC-CCEEEEEccCCCccc-cCCEEEEEeCCeEEEccChHHHHh
Q 037346 505 LLDDPFSPVDDHTGAHLFKFCWV--SS-SKTVIYATHQVEFLP-AADLILVIKDGKITQAGKYSDILN 568 (1156)
Q Consensus 505 llDep~s~lD~~~~~~i~~~~~~--~~-~~tvi~vtH~~~~~~-~~d~i~~l~~G~i~~~g~~~~l~~ 568 (1156)
||||||++||+.+++.+.+.+.. .+ |+|+|++||+++.+. .||++++|++|+ ++.|+++++.+
T Consensus 151 lLDEPts~LD~~~~~~l~~~l~~l~~~~g~tvi~vtHd~~~~~~~~d~v~~l~~G~-~~~g~~~~~~~ 217 (253)
T 2nq2_C 151 LLDEPTSALDLANQDIVLSLLIDLAQSQNMTVVFTTHQPNQVVAIANKTLLLNKQN-FKFGETRNILT 217 (253)
T ss_dssp EESSSSTTSCHHHHHHHHHHHHHHHHTSCCEEEEEESCHHHHHHHCSEEEEEETTE-EEEEEHHHHCC
T ss_pred EEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEeCCe-EecCCHHHHhC
Confidence 99999999999999998876643 33 899999999999885 699999999999 99999988764
|
| >2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-39 Score=406.65 Aligned_cols=200 Identities=22% Similarity=0.316 Sum_probs=148.0
Q ss_pred EEEEEEEEcCCCCceeeCCCCCCHHHHHHH-Hhhccc-------------------------CCCc-------eEEEcCe
Q 037346 950 IRHLQVRYAPNLPLVLRGRTGSGKSTLIQT-LFRIVE-------------------------STAG-------HILIDGK 996 (1156)
Q Consensus 950 ~~~Vsf~Y~~~~~~vL~G~SGsGKSTL~~l-L~rl~~-------------------------p~~G-------~I~idG~ 996 (1156)
++||+|..++++-++|.|+||||||||++. |+|+.. +.+| .|.+||.
T Consensus 513 L~~vsl~i~~Geiv~I~G~nGSGKSTLl~~~L~g~l~~~~g~~~~~~g~~~~~~~~~~~~~~~~~G~~~~~~~~i~vdq~ 592 (842)
T 2vf7_A 513 LDNLDVRFPLGVMTSVTGVSGSGKSTLVSQALVDALAAHFGQPVNPDPEDDEDPADHTAGSARLGGDLAQITRLVRVDQK 592 (842)
T ss_dssp EEEEEEEEESSSEEEEECCTTSSHHHHCCCCCHHHHHHHTTC-----------------CCCEEEESGGGCCEEEEECSS
T ss_pred cccceEEEcCCCEEEEEcCCCcCHHHHHHHHHHHHHHHHhcCCCCccccccccccccccccccccCcccccceEEEECCe
Confidence 899999999999999999999999999997 776642 2467 7899999
Q ss_pred eCCCCCh----------HHHhhcCeeeccc-------------------------------cccc---------------
Q 037346 997 DISLIGL----------HDLRTRLSIIPQD-------------------------------PTMF--------------- 1020 (1156)
Q Consensus 997 di~~i~~----------~~LR~~i~~VpQd-------------------------------p~LF--------------- 1020 (1156)
++..-+. +.+|+.++.+|++ -.++
T Consensus 593 ~i~~~~rs~~at~~~~~~~ir~~fa~~~~~r~~g~~~~~fs~n~~~g~c~~c~g~G~~~~~~~f~~~v~~~c~~c~G~r~ 672 (842)
T 2vf7_A 593 PIGRTPRSNMATYTGLFDQVRKLFAATPLAKKRGYNAGRFSFNVKGGRCEHCQGEGWVMVELLFLPSVYAPCPVCHGTRY 672 (842)
T ss_dssp CSCSSTTCCHHHHSSTHHHHHHHHHTSHHHHHTTCCGGGGCSSSTTTBCTTTTTCSEEEETTCSSSCEEEECTTTTTCCB
T ss_pred eCCCCccccchhhhhHHHHHHHHHhcChHHHhcCCccccccccccccccccccCCCccchhhhcCCccceecccccCccc
Confidence 8865443 4455544444321 0111
Q ss_pred ----------cccchhccCC--------CCCCC-HHHHHHHHHHcCCChH-HHhhcCCcccc-------ccccccC---C
Q 037346 1021 ----------EGTTRSNLDP--------LEEHA-DEQIWEALDKCQLGDE-VRKKKGKLDSQ-------GRVLLKK---S 1070 (1156)
Q Consensus 1021 ----------~gTIr~Nl~~--------~~~~~-deei~~al~~~~l~~~-i~~lp~gl~s~-------ARALLr~---~ 1070 (1156)
.-||.||+.. +.... .+++.++|+.++|... ....+..|..+ ||+|+++ |
T Consensus 673 ~~e~l~v~~~~~si~e~l~ltv~e~l~~~~~~~~~~~~~~~L~~~gL~~~~l~~~~~~LSGGekQRv~LAraL~~~p~~p 752 (842)
T 2vf7_A 673 NAETLEVEYRGKNIADVLALTVDEAHDFFADESAIFRALDTLREVGLGYLRLGQPATELSGGEAQRIKLATELRRSGRGG 752 (842)
T ss_dssp CTTGGGCCBTTBCHHHHHTCBHHHHHHHTTTSHHHHHHHHHHHHTTCTTSBTTCCGGGCCHHHHHHHHHHHTTSSCCSSC
T ss_pred chhhHhhhhcCCCHHHHHhccHHHHHHHhhcchHHHHHHHHHHHcCCCcccccCCcccCCHHHHHHHHHHHHHHhCCCCC
Confidence 1244455432 22211 2457788999999763 33334444332 8999996 7
Q ss_pred CEEEEecCCcCCCHHHHHHHHHHHHHhc-CCceEEEeecCcccccccCEEEEE------eCcEEeeecChhHHhcCCCCh
Q 037346 1071 KVLVLDEATASVDTATDNQIQQTLRQHF-SDCTVVTIAHRITSVLDSAMVLLL------NHGLIKEYDSPTKLLENKSSS 1143 (1156)
Q Consensus 1071 ~ILiLDEaTS~LD~~te~~I~~~l~~~~-~~~TvI~IaHrl~ti~~~D~I~Vl------~~G~IvE~G~~~eLl~~~~g~ 1143 (1156)
+||||||||++||+.+.+.|.+.|+++. ++.|||+|+|+++.+..||+|++| ++|+|++.|+|+++++++.+.
T Consensus 753 ~lLILDEPTsGLD~~~~~~l~~lL~~L~~~G~tVIvisHdl~~i~~aDrii~L~p~~g~~~G~Iv~~g~~~el~~~~~~~ 832 (842)
T 2vf7_A 753 TVYVLDEPTTGLHPADVERLQRQLVKLVDAGNTVIAVEHKMQVVAASDWVLDIGPGAGEDGGRLVAQGTPAEVAQAAGSV 832 (842)
T ss_dssp EEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECCCHHHHTTCSEEEEECSSSGGGCCSEEEEECHHHHTTCTTCS
T ss_pred CEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEcCCHHHHHhCCEEEEECCCCCCCCCEEEEEcCHHHHHhCchhH
Confidence 9999999999999999999999998864 589999999999999999999999 699999999999999765544
Q ss_pred HHHHHH
Q 037346 1144 FAQLVA 1149 (1156)
Q Consensus 1144 f~~l~~ 1149 (1156)
-....+
T Consensus 833 t~~~l~ 838 (842)
T 2vf7_A 833 TAPYLR 838 (842)
T ss_dssp SHHHHH
T ss_pred HHHHHH
Confidence 334333
|
| >2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=100.00 E-value=9.9e-41 Score=370.56 Aligned_cols=199 Identities=26% Similarity=0.362 Sum_probs=170.9
Q ss_pred ccEEEeeeEEEeCCCCCCCccccceEEeeCCeEEEEEcCCCCChHHHHHHHhCCCCCCCcEEEEcC--------------
Q 037346 356 TAIEIIDGSFSWDFSSPNPTLRNINLKVFHGMRVAVCGTVGSGKSSCLSCILGGVPKESGIIRLCG-------------- 421 (1156)
Q Consensus 356 ~~i~~~~~~f~~~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKSTll~~i~g~~~~~~G~i~~~g-------------- 421 (1156)
..++++|++++|+ ++++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|
T Consensus 20 ~~l~~~~l~~~y~---~~~vL~~isl~i~~Ge~~~liG~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~ 96 (279)
T 2ihy_A 20 MLIQLDQIGRMKQ---GKTILKKISWQIAKGDKWILYGLNGAGKTTLLNILNAYEPATSGTVNLFGKMPGKVGYSAETVR 96 (279)
T ss_dssp EEEEEEEEEEEET---TEEEEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTBCCC---CCHHHHH
T ss_pred ceEEEEeEEEEEC---CEEEEEeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCeEEEECCEEcccccCCHHHHc
Confidence 4699999999996 35799999999999999999999999999999999999999999999987
Q ss_pred -eEEEEecCCcC-CCc--cHHHHhhcCCC--------CC---HHHHHHHHHHhCCchhhhhCCCCCccccccCCCCCCHH
Q 037346 422 -TKAYVAQSPWI-QSG--KIEENILFGKE--------MD---RERYERVLEACSLKKDLEVLPFGDQTIIGERGINLSGG 486 (1156)
Q Consensus 422 -~~~~v~Q~~~~-~~~--ti~eni~~~~~--------~~---~~~~~~~~~~~~l~~~~~~~~~g~~t~v~~~g~~LSgG 486 (1156)
.++|++|++.+ +.. ||+||+.++.. .. .++.+++++.+++.+.. .+...+||||
T Consensus 97 ~~i~~v~Q~~~~~~~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~-----------~~~~~~LSgG 165 (279)
T 2ihy_A 97 QHIGFVSHSLLEKFQEGERVIDVVISGAFKSIGVYQDIDDEIRNEAHQLLKLVGMSAKA-----------QQYIGYLSTG 165 (279)
T ss_dssp TTEEEECHHHHTTSCTTSBHHHHHHTTC---------CCHHHHHHHHHHHHHTTCGGGT-----------TSBGGGSCHH
T ss_pred CcEEEEEcCcccccCCCCCHHHHHHhhhhhccccccCCcHHHHHHHHHHHHHcCChhHh-----------cCChhhCCHH
Confidence 27999999864 444 99999998641 12 23456677777775443 3455789999
Q ss_pred HHHHHHHHHhhccCCCeeeeeCCCCCcCHHHHHHHHHHHHh--cCCCEE--EEEccCCCccc-cCCEEEEEeCCeEEEcc
Q 037346 487 QKQRIQIARPLYQDADIFLLDDPFSPVDDHTGAHLFKFCWV--SSSKTV--IYATHQVEFLP-AADLILVIKDGKITQAG 561 (1156)
Q Consensus 487 qkqRi~lAral~~~~~illlDep~s~lD~~~~~~i~~~~~~--~~~~tv--i~vtH~~~~~~-~~d~i~~l~~G~i~~~g 561 (1156)
|||||+|||||+.+|++|||||||++||+.+++.+.+.+.. .+|+|+ |+|||+++.+. .||+|++|++|++++.|
T Consensus 166 qkqRv~lAraL~~~p~lLlLDEPts~LD~~~~~~l~~~l~~l~~~g~tv~~iivtHd~~~~~~~~d~v~~l~~G~i~~~g 245 (279)
T 2ihy_A 166 EKQRVMIARALMGQPQVLILDEPAAGLDFIARESLLSILDSLSDSYPTLAMIYVTHFIEEITANFSKILLLKDGQSIQQG 245 (279)
T ss_dssp HHHHHHHHHHHHTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHHCTTCEEEEEESCGGGCCTTCCEEEEEETTEEEEEE
T ss_pred HHHHHHHHHHHhCCCCEEEEeCCccccCHHHHHHHHHHHHHHHHCCCEEEEEEEecCHHHHHHhCCEEEEEECCEEEEEC
Confidence 99999999999999999999999999999999998876643 238899 99999999875 59999999999999999
Q ss_pred ChHHHHh
Q 037346 562 KYSDILN 568 (1156)
Q Consensus 562 ~~~~l~~ 568 (1156)
+++++.+
T Consensus 246 ~~~~~~~ 252 (279)
T 2ihy_A 246 AVEDILT 252 (279)
T ss_dssp EHHHHCS
T ss_pred CHHHHhc
Confidence 9988764
|
| >1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A | Back alignment and structure |
|---|
Probab=100.00 E-value=2e-40 Score=381.10 Aligned_cols=200 Identities=26% Similarity=0.351 Sum_probs=174.5
Q ss_pred cEEEeeeEEEeCCCCCCCccccceEEeeCCeEEEEEcCCCCChHHHHHHHhCCCCCCCcEEEEcCe--------------
Q 037346 357 AIEIIDGSFSWDFSSPNPTLRNINLKVFHGMRVAVCGTVGSGKSSCLSCILGGVPKESGIIRLCGT-------------- 422 (1156)
Q Consensus 357 ~i~~~~~~f~~~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKSTll~~i~g~~~~~~G~i~~~g~-------------- 422 (1156)
.++++|++++|+ +.++|+|+||+|++||+++|+|||||||||||++|+|+++|++|+|.++|+
T Consensus 3 ~l~~~~l~~~y~---~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~~~~~~~~~~~~~~ 79 (372)
T 1g29_1 3 GVRLVDVWKVFG---EVTAVREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEEPSRGQIYIGDKLVADPEKGIFVPPK 79 (372)
T ss_dssp EEEEEEEEEEET---TEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEEEEEGGGTEECCGG
T ss_pred EEEEEeEEEEEC---CEEEEeeeEEEEcCCCEEEEECCCCcHHHHHHHHHHcCCCCCccEEEECCEECccccccccCCHh
Confidence 489999999995 357999999999999999999999999999999999999999999999872
Q ss_pred ---EEEEecCCcCCC-ccHHHHhhcCCC---CC----HHHHHHHHHHhCCchhhhhCCCCCccccccCCCCCCHHHHHHH
Q 037346 423 ---KAYVAQSPWIQS-GKIEENILFGKE---MD----RERYERVLEACSLKKDLEVLPFGDQTIIGERGINLSGGQKQRI 491 (1156)
Q Consensus 423 ---~~~v~Q~~~~~~-~ti~eni~~~~~---~~----~~~~~~~~~~~~l~~~~~~~~~g~~t~v~~~g~~LSgGqkqRi 491 (1156)
++||+|++.+|. .||+|||.|+.. .. +++.+++++.++|.+..+ ++..+|||||||||
T Consensus 80 ~r~ig~v~Q~~~l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~-----------r~~~~LSGGq~QRv 148 (372)
T 1g29_1 80 DRDIAMVFQSYALYPHMTVYDNIAFPLKLRKVPRQEIDQRVREVAELLGLTELLN-----------RKPRELSGGQRQRV 148 (372)
T ss_dssp GSSEEEECSCCCCCTTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHTCGGGTT-----------CCGGGSCHHHHHHH
T ss_pred HCCEEEEeCCCccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCchHhc-----------CCcccCCHHHHHHH
Confidence 799999998875 599999998631 22 245677888888866544 34468999999999
Q ss_pred HHHHhhccCCCeeeeeCCCCCcCHHHHHHHHHHHHh---cCCCEEEEEccCCCccc-cCCEEEEEeCCeEEEccChHHHH
Q 037346 492 QIARPLYQDADIFLLDDPFSPVDDHTGAHLFKFCWV---SSSKTVIYATHQVEFLP-AADLILVIKDGKITQAGKYSDIL 567 (1156)
Q Consensus 492 ~lAral~~~~~illlDep~s~lD~~~~~~i~~~~~~---~~~~tvi~vtH~~~~~~-~~d~i~~l~~G~i~~~g~~~~l~ 567 (1156)
+|||||+.+|++||||||||+||+..++.+.+.+.. ..|.|+|+|||+++.+. .||+|++|++|++++.|+++++.
T Consensus 149 alArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~a~~~adri~vl~~G~i~~~g~~~~l~ 228 (372)
T 1g29_1 149 ALGRAIVRKPQVFLMDEPLSNLDAKLRVRMRAELKKLQRQLGVTTIYVTHDQVEAMTMGDRIAVMNRGVLQQVGSPDEVY 228 (372)
T ss_dssp HHHHHHHTCCSEEEEECTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHH
T ss_pred HHHHHHhcCCCEEEECCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEECCCHHHHHHhCCEEEEEeCCEEEEeCCHHHHH
Confidence 999999999999999999999999999998876643 23899999999998875 59999999999999999999998
Q ss_pred hcC
Q 037346 568 NSG 570 (1156)
Q Consensus 568 ~~~ 570 (1156)
...
T Consensus 229 ~~p 231 (372)
T 1g29_1 229 DKP 231 (372)
T ss_dssp HSC
T ss_pred hCc
Confidence 653
|
| >2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-39 Score=355.69 Aligned_cols=204 Identities=25% Similarity=0.391 Sum_probs=184.9
Q ss_pred EEEEEEEEEEcCCCCceeeCCCCCCHHHHHHHHhhcccCCCceEEEcCeeCCCCChHHHhhcCeeeccccccccccchhc
Q 037346 948 VNIRHLQVRYAPNLPLVLRGRTGSGKSTLIQTLFRIVESTAGHILIDGKDISLIGLHDLRTRLSIIPQDPTMFEGTTRSN 1027 (1156)
Q Consensus 948 I~~~~Vsf~Y~~~~~~vL~G~SGsGKSTL~~lL~rl~~p~~G~I~idG~di~~i~~~~LR~~i~~VpQdp~LF~gTIr~N 1027 (1156)
..++||||..++++.++|.||||||||||+++|+|+++|++|+|.+||.++.+++...+|++|+||||+|.+|++|++||
T Consensus 23 ~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~I~i~g~~~~~~~~~~~~~~i~~v~Q~~~l~~~tv~en 102 (247)
T 2ff7_A 23 VILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVLIDGHDLALADPNWLRRQVGVVLQDNVLLNRSIIDN 102 (247)
T ss_dssp EEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEETTTSCHHHHHHHEEEECSSCCCTTSBHHHH
T ss_pred ceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEhhhCCHHHHHhcEEEEeCCCccccccHHHH
Confidence 35677777777777778889999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCC-CCCHHHHHHHHHHcCCChHHHhhcCCcccc------------------ccccccCCCEEEEecCCcCCCHHHHH
Q 037346 1028 LDPLE-EHADEQIWEALDKCQLGDEVRKKKGKLDSQ------------------GRVLLKKSKVLVLDEATASVDTATDN 1088 (1156)
Q Consensus 1028 l~~~~-~~~deei~~al~~~~l~~~i~~lp~gl~s~------------------ARALLr~~~ILiLDEaTS~LD~~te~ 1088 (1156)
+.++. ..++++++++++.+++.+++..+|.|+++. ||||+++|+|||||||||+||+++.+
T Consensus 103 l~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~gl~~~~~~~~~~LSgGq~qRv~iAraL~~~p~lllLDEPts~LD~~~~~ 182 (247)
T 2ff7_A 103 ISLANPGMSVEKVIYAAKLAGAHDFISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEH 182 (247)
T ss_dssp HTTTCTTCCHHHHHHHHHHHTCHHHHHTSTTGGGCBCSTTTTCCCHHHHHHHHHHHHHTTCCSEEEECCCCSCCCHHHHH
T ss_pred HhccCCCCCHHHHHHHHHHhChHHHHHhCcchhhhhhhCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHH
Confidence 98754 345788999999999999999888766532 89999999999999999999999999
Q ss_pred HHHHHHHHhcCCceEEEeecCcccccccCEEEEEeCcEEeeecChhHHhcCCCChHHHHHHHH
Q 037346 1089 QIQQTLRQHFSDCTVVTIAHRITSVLDSAMVLLLNHGLIKEYDSPTKLLENKSSSFAQLVAEY 1151 (1156)
Q Consensus 1089 ~I~~~l~~~~~~~TvI~IaHrl~ti~~~D~I~Vl~~G~IvE~G~~~eLl~~~~g~f~~l~~~~ 1151 (1156)
.|.+.|++..+++|||+|||+++.+..||+|++|++|++++.|+++++++++.+.|++++..+
T Consensus 183 ~i~~~l~~~~~g~tviivtH~~~~~~~~d~v~~l~~G~i~~~g~~~~l~~~~~~~~~~l~~~~ 245 (247)
T 2ff7_A 183 VIMRNMHKICKGRTVIIIAHRLSTVKNADRIIVMEKGKIVEQGKHKELLSEPESLYSYLYQLQ 245 (247)
T ss_dssp HHHHHHHHHHTTSEEEEECSSGGGGTTSSEEEEEETTEEEEEECHHHHHTSTTCHHHHHHHHH
T ss_pred HHHHHHHHHcCCCEEEEEeCCHHHHHhCCEEEEEECCEEEEECCHHHHHhCCchHHHHHHHhh
Confidence 999999988778999999999999999999999999999999999999976578999998754
|
| >2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii} | Back alignment and structure |
|---|
Probab=100.00 E-value=5.5e-40 Score=361.05 Aligned_cols=196 Identities=23% Similarity=0.315 Sum_probs=172.2
Q ss_pred EEEeeeEEEeCCC-CCCCccccceEEeeCCeEEEEEcCCCCChHHHHHHHhCCCCCCCcEEEEcC----------eEE-E
Q 037346 358 IEIIDGSFSWDFS-SPNPTLRNINLKVFHGMRVAVCGTVGSGKSSCLSCILGGVPKESGIIRLCG----------TKA-Y 425 (1156)
Q Consensus 358 i~~~~~~f~~~~~-~~~~~l~~i~l~i~~g~~~~ivG~~GsGKSTll~~i~g~~~~~~G~i~~~g----------~~~-~ 425 (1156)
++++|++++|+.. ..+++|+|+||+++ |++++|+||||||||||+++|+|++ |++|+|.++| +++ |
T Consensus 2 l~~~~l~~~y~~~~~~~~il~~vsl~i~-Ge~~~i~G~NGsGKSTLlk~l~Gl~-p~~G~I~~~g~~~~~~~~~~~i~~~ 79 (263)
T 2pjz_A 2 IQLKNVGITLSGKGYERFSLENINLEVN-GEKVIILGPNGSGKTTLLRAISGLL-PYSGNIFINGMEVRKIRNYIRYSTN 79 (263)
T ss_dssp EEEEEEEEEEEEETTEEEEEEEEEEEEC-SSEEEEECCTTSSHHHHHHHHTTSS-CCEEEEEETTEEGGGCSCCTTEEEC
T ss_pred EEEEEEEEEeCCCCccceeEEeeeEEEC-CEEEEEECCCCCCHHHHHHHHhCCC-CCCcEEEECCEECcchHHhhheEEE
Confidence 7899999999621 01579999999999 9999999999999999999999999 9999999998 489 9
Q ss_pred EecCCcCCCccHHHHhhcCC---CCCHHHHHHHHHHhCCc-hhhhhCCCCCccccccCCCCCCHHHHHHHHHHHhhccCC
Q 037346 426 VAQSPWIQSGKIEENILFGK---EMDRERYERVLEACSLK-KDLEVLPFGDQTIIGERGINLSGGQKQRIQIARPLYQDA 501 (1156)
Q Consensus 426 v~Q~~~~~~~ti~eni~~~~---~~~~~~~~~~~~~~~l~-~~~~~~~~g~~t~v~~~g~~LSgGqkqRi~lAral~~~~ 501 (1156)
+||+|.+ ..|++||+.++. ..++++.+++++.+++. +.. ++++.+||||||||++|||||+.+|
T Consensus 80 v~Q~~~l-~~tv~enl~~~~~~~~~~~~~~~~~l~~~gl~~~~~-----------~~~~~~LSgGqkqRv~lAraL~~~p 147 (263)
T 2pjz_A 80 LPEAYEI-GVTVNDIVYLYEELKGLDRDLFLEMLKALKLGEEIL-----------RRKLYKLSAGQSVLVRTSLALASQP 147 (263)
T ss_dssp CGGGSCT-TSBHHHHHHHHHHHTCCCHHHHHHHHHHTTCCGGGG-----------GSBGGGSCHHHHHHHHHHHHHHTCC
T ss_pred eCCCCcc-CCcHHHHHHHhhhhcchHHHHHHHHHHHcCCChhHh-----------cCChhhCCHHHHHHHHHHHHHHhCC
Confidence 9999998 889999998753 34567788888888876 433 3456799999999999999999999
Q ss_pred CeeeeeCCCCCcCHHHHHHHHHHHHhcCCCEEEEEccCCCccc-cCC-EEEEEeCCeEEEccChHHHHh
Q 037346 502 DIFLLDDPFSPVDDHTGAHLFKFCWVSSSKTVIYATHQVEFLP-AAD-LILVIKDGKITQAGKYSDILN 568 (1156)
Q Consensus 502 ~illlDep~s~lD~~~~~~i~~~~~~~~~~tvi~vtH~~~~~~-~~d-~i~~l~~G~i~~~g~~~~l~~ 568 (1156)
+++||||||++||+.+++.+.+.+..... |+|++||+++.+. .|| ++++|++|++++.|+++++.+
T Consensus 148 ~lllLDEPts~LD~~~~~~l~~~L~~~~~-tviivtHd~~~~~~~~d~~i~~l~~G~i~~~g~~~~l~~ 215 (263)
T 2pjz_A 148 EIVGLDEPFENVDAARRHVISRYIKEYGK-EGILVTHELDMLNLYKEYKAYFLVGNRLQGPISVSELLE 215 (263)
T ss_dssp SEEEEECTTTTCCHHHHHHHHHHHHHSCS-EEEEEESCGGGGGGCTTSEEEEEETTEEEEEEEHHHHHT
T ss_pred CEEEEECCccccCHHHHHHHHHHHHHhcC-cEEEEEcCHHHHHHhcCceEEEEECCEEEEecCHHHHHh
Confidence 99999999999999999999887755544 9999999999875 699 999999999999999998864
|
| >2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C | Back alignment and structure |
|---|
Probab=100.00 E-value=9.8e-40 Score=356.43 Aligned_cols=193 Identities=23% Similarity=0.347 Sum_probs=171.0
Q ss_pred cEEEeeeEEEeCCCCCCCccccceEEeeCCeEEEEEcCCCCChHHHHHHHhCCCCCCCcEEEEcCe-------------E
Q 037346 357 AIEIIDGSFSWDFSSPNPTLRNINLKVFHGMRVAVCGTVGSGKSSCLSCILGGVPKESGIIRLCGT-------------K 423 (1156)
Q Consensus 357 ~i~~~~~~f~~~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKSTll~~i~g~~~~~~G~i~~~g~-------------~ 423 (1156)
.++++|++++ ++|+|+||+|++||+++|+||||||||||+++|+|+++|+ |+|.++|. +
T Consensus 4 ~l~~~~l~~~-------~vl~~vsl~i~~Ge~~~liG~NGsGKSTLlk~l~Gl~~p~-G~i~~~g~~~~~~~~~~~~~~i 75 (249)
T 2qi9_C 4 VMQLQDVAES-------TRLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMTSGK-GSIQFAGQPLEAWSATKLALHR 75 (249)
T ss_dssp EEEEEEEEET-------TTEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCE-EEEEETTEEGGGSCHHHHHHHE
T ss_pred EEEEEceEEE-------EEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCC-eEEEECCEECCcCCHHHHhceE
Confidence 4889999986 5899999999999999999999999999999999999999 99999983 7
Q ss_pred EEEecCCcCCCc-cHHHHhhcCCC--CCHHHHHHHHHHhCCchhhhhCCCCCccccccCCCCCCHHHHHHHHHHHhhccC
Q 037346 424 AYVAQSPWIQSG-KIEENILFGKE--MDRERYERVLEACSLKKDLEVLPFGDQTIIGERGINLSGGQKQRIQIARPLYQD 500 (1156)
Q Consensus 424 ~~v~Q~~~~~~~-ti~eni~~~~~--~~~~~~~~~~~~~~l~~~~~~~~~g~~t~v~~~g~~LSgGqkqRi~lAral~~~ 500 (1156)
+|++|+|.++.. |++||+.++.. .++++.+++++.+++.+..+ +++.+||||||||++|||||+.+
T Consensus 76 ~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~l~~~~l~~~~~-----------~~~~~LSgGq~qrv~lAraL~~~ 144 (249)
T 2qi9_C 76 AYLSQQQTPPFATPVWHYLTLHQHDKTRTELLNDVAGALALDDKLG-----------RSTNQLSGGEWQRVRLAAVVLQI 144 (249)
T ss_dssp EEECSCCCCCTTCBHHHHHHTTCSSTTCHHHHHHHHHHTTCGGGTT-----------SBGGGCCHHHHHHHHHHHHHHHH
T ss_pred EEECCCCccCCCCcHHHHHHHhhccCCcHHHHHHHHHHcCChhHhc-----------CChhhCCHHHHHHHHHHHHHHcC
Confidence 999999987764 99999998742 23667888899888865443 45578999999999999999999
Q ss_pred CC-------eeeeeCCCCCcCHHHHHHHHHHHHh--cCCCEEEEEccCCCccc-cCCEEEEEeCCeEEEccChHHHHh
Q 037346 501 AD-------IFLLDDPFSPVDDHTGAHLFKFCWV--SSSKTVIYATHQVEFLP-AADLILVIKDGKITQAGKYSDILN 568 (1156)
Q Consensus 501 ~~-------illlDep~s~lD~~~~~~i~~~~~~--~~~~tvi~vtH~~~~~~-~~d~i~~l~~G~i~~~g~~~~l~~ 568 (1156)
|+ ++||||||++||+.+++.+.+.+.. .+|+|+|++||+++.+. .||++++|++|++++.|+++++.+
T Consensus 145 p~~~~~~~~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tviivtHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~ 222 (249)
T 2qi9_C 145 TPQANPAGQLLLLDEPMNSLDVAQQSALDKILSALSQQGLAIVMSSHDLNHTLRHAHRAWLLKGGKMLASGRREEVLT 222 (249)
T ss_dssp CTTTCTTCCEEEESSTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCHHHHHHHCSEEEEEETTEEEEEEEHHHHSC
T ss_pred CCcCCCCCeEEEEECCcccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHhc
Confidence 99 9999999999999999998876643 35899999999999884 699999999999999999988864
|
| >3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=100.00 E-value=6.8e-40 Score=412.04 Aligned_cols=199 Identities=19% Similarity=0.279 Sum_probs=144.6
Q ss_pred EEEEEEEEcCCCCceeeCCCCCCHHHHH---------HHHhhcccC------CCc------eEEEcCeeCCCCCh-----
Q 037346 950 IRHLQVRYAPNLPLVLRGRTGSGKSTLI---------QTLFRIVES------TAG------HILIDGKDISLIGL----- 1003 (1156)
Q Consensus 950 ~~~Vsf~Y~~~~~~vL~G~SGsGKSTL~---------~lL~rl~~p------~~G------~I~idG~di~~i~~----- 1003 (1156)
++||+|..++++-++|.|+||||||||+ +++.+...+ .+| .|.+|+.++...+.
T Consensus 600 Lk~Vsl~I~~Geiv~I~G~SGSGKSTLl~~~l~~~l~~~l~~~~~~~g~~~~~~G~~~i~~~i~idq~pig~~~rs~~at 679 (916)
T 3pih_A 600 LKNIDVEIPLGVFVCVTGVSGSGKSSLVMETLYPALMNLLHKTKLPAGEFDSIEGHENIDKMIAIDQSPIGRTPRSNPAT 679 (916)
T ss_dssp CCSEEEEEESSSEEEEECSTTSSHHHHHHHTHHHHHHHHHHCCCCCCCCCSEEECGGGCCEEEEECSCCCCCCTTCCHHH
T ss_pred ccccceEEcCCcEEEEEccCCCChhhhHHHHHHHHHHHHhccccccccccccccccccccceEeeccccccccccccccc
Confidence 6789999999999999999999999997 333333322 233 36666666644321
Q ss_pred -----HHHh-------------------------------hcCeeecccccccc--------------------------
Q 037346 1004 -----HDLR-------------------------------TRLSIIPQDPTMFE-------------------------- 1021 (1156)
Q Consensus 1004 -----~~LR-------------------------------~~i~~VpQdp~LF~-------------------------- 1021 (1156)
+.+| +..|+++|+..++.
T Consensus 680 ~~~~~~~ir~lfa~~~~a~~~g~~~~~fs~n~~~grc~~c~g~G~i~~e~~flp~~~v~c~~c~g~r~~~e~l~i~~~g~ 759 (916)
T 3pih_A 680 YTKVFDEIRSLFAMTPAAKARGYNKSRFSFNLKGGRCEACQGQGYVKIEMLFLPDVYVECDVCKGKRYNRETLEITYKGK 759 (916)
T ss_dssp HSSHHHHHHHHHTTSHHHHHSSCCGGGGCTTSTTTBCTTTTTSSEEEECCTTSCCEEEECTTTTTSCBCTTGGGCCBTTB
T ss_pred hhhhHHHHHHHhccchHHHhcccccccccccccccccccccCcceEEEeeeccCcceeecccccccccchhhhhhhhccC
Confidence 1122 23567777765543
Q ss_pred -------ccchhccCCCCCCC-HHHHHHHHHHcCCChHHHhhcCCcccc--------ccccccCC---CEEEEecCCcCC
Q 037346 1022 -------GTTRSNLDPLEEHA-DEQIWEALDKCQLGDEVRKKKGKLDSQ--------GRVLLKKS---KVLVLDEATASV 1082 (1156)
Q Consensus 1022 -------gTIr~Nl~~~~~~~-deei~~al~~~~l~~~i~~lp~gl~s~--------ARALLr~~---~ILiLDEaTS~L 1082 (1156)
.|+++|+.++.... .++..++|+.+||.......|..-.|+ ||||+++| +||||||||++|
T Consensus 760 ~i~~vl~~tv~eal~f~~~~~~~~~~~~~L~~vGL~~~~lgq~~~~LSGGErQRV~LAraL~~~p~~p~LLILDEPTsGL 839 (916)
T 3pih_A 760 NISDILDMTVDEALEFFKNIPSIKRTLQVLHDVGLGYVKLGQPATTLSGGEAQRIKLASELRKRDTGRTLYILDEPTVGL 839 (916)
T ss_dssp CHHHHHSSBHHHHHHHTTTCHHHHHHHHHHHHTTGGGSBTTCCSTTCCHHHHHHHHHHHHHTSCCCSSEEEEEESTTTTC
T ss_pred CHHHHhhCCHHHHHHHHhcchhHHHHHHHHHHcCCchhhccCCccCCCHHHHHHHHHHHHHhhCCCCCCEEEEECCCCCC
Confidence 34555555444332 345778888999864322222222333 89999875 799999999999
Q ss_pred CHHHHHHHHHHHHHhc-CCceEEEeecCcccccccCEEEEE------eCcEEeeecChhHHhcCCCChHHHHH
Q 037346 1083 DTATDNQIQQTLRQHF-SDCTVVTIAHRITSVLDSAMVLLL------NHGLIKEYDSPTKLLENKSSSFAQLV 1148 (1156)
Q Consensus 1083 D~~te~~I~~~l~~~~-~~~TvI~IaHrl~ti~~~D~I~Vl------~~G~IvE~G~~~eLl~~~~g~f~~l~ 1148 (1156)
|+.+.+.|++.|+++. +++|||+|+|+++.+..||+|++| ++|+|++.|+|+++++++++...+++
T Consensus 840 D~~~~~~L~~lL~~L~~~G~TVIvI~HdL~~i~~ADrIivLgp~gg~~~G~Iv~~Gtpeel~~~~~syt~~~l 912 (916)
T 3pih_A 840 HFEDVRKLVEVLHRLVDRGNTVIVIEHNLDVIKNADHIIDLGPEGGKEGGYIVATGTPEEIAKNPHSYTGRFL 912 (916)
T ss_dssp CHHHHHHHHHHHHHHHHTTCEEEEECCCHHHHTTCSEEEEEESSSGGGCCEEEEEESHHHHHSCTTCHHHHHH
T ss_pred CHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhCCEEEEecCCCCCCCCEEEEEcCHHHHHhCCchHHHHHH
Confidence 9999999999998874 589999999999999999999999 89999999999999987655544444
|
| >2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3e-39 Score=354.22 Aligned_cols=194 Identities=25% Similarity=0.252 Sum_probs=161.2
Q ss_pred cEEEeeeEEEeCCCCCCCccccceEEeeCCeEEEEEcCCCCChHHHHHHHhCC--CCCCCcEEEEcCe------------
Q 037346 357 AIEIIDGSFSWDFSSPNPTLRNINLKVFHGMRVAVCGTVGSGKSSCLSCILGG--VPKESGIIRLCGT------------ 422 (1156)
Q Consensus 357 ~i~~~~~~f~~~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKSTll~~i~g~--~~~~~G~i~~~g~------------ 422 (1156)
.++++|++|+|+ ++++|+|+||+|++||+++|+||||||||||+++|+|+ ++|++|+|.++|.
T Consensus 3 ~l~~~~l~~~y~---~~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLlk~l~Gl~~~~p~~G~I~~~g~~~~~~~~~~~~~ 79 (250)
T 2d2e_A 3 QLEIRDLWASID---GETILKGVNLVVPKGEVHALMGPNGAGKSTLGKILAGDPEYTVERGEILLDGENILELSPDERAR 79 (250)
T ss_dssp EEEEEEEEEEET---TEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTCTTCEEEEEEEEETTEECTTSCHHHHHH
T ss_pred eEEEEeEEEEEC---CEEEEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCceEEEECCEECCCCCHHHHHh
Confidence 489999999996 35799999999999999999999999999999999998 8899999999983
Q ss_pred --EEEEecCCcCCCc-cHHHHhhcCC------CCC----HHHHHHHHHHhCCc-hhhhhCCCCCccccccCCCC-CCHHH
Q 037346 423 --KAYVAQSPWIQSG-KIEENILFGK------EMD----RERYERVLEACSLK-KDLEVLPFGDQTIIGERGIN-LSGGQ 487 (1156)
Q Consensus 423 --~~~v~Q~~~~~~~-ti~eni~~~~------~~~----~~~~~~~~~~~~l~-~~~~~~~~g~~t~v~~~g~~-LSgGq 487 (1156)
++|++|+|.++.. |++||+.++. ... .++..++++.+++. +..+ ....+ |||||
T Consensus 80 ~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~-----------~~~~~~LSgGq 148 (250)
T 2d2e_A 80 KGLFLAFQYPVEVPGVTIANFLRLALQAKLGREVGVAEFWTKVKKALELLDWDESYLS-----------RYLNEGFSGGE 148 (250)
T ss_dssp TTBCCCCCCCC-CCSCBHHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHTCCGGGGG-----------SBTTCC----H
T ss_pred CcEEEeccCCccccCCCHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHcCCChhHhc-----------CCcccCCCHHH
Confidence 5799999988765 9999998642 111 23556677777774 3332 23356 99999
Q ss_pred HHHHHHHHhhccCCCeeeeeCCCCCcCHHHHHHHHHHHHh--cCCCEEEEEccCCCcccc--CCEEEEEeCCeEEEccCh
Q 037346 488 KQRIQIARPLYQDADIFLLDDPFSPVDDHTGAHLFKFCWV--SSSKTVIYATHQVEFLPA--ADLILVIKDGKITQAGKY 563 (1156)
Q Consensus 488 kqRi~lAral~~~~~illlDep~s~lD~~~~~~i~~~~~~--~~~~tvi~vtH~~~~~~~--~d~i~~l~~G~i~~~g~~ 563 (1156)
|||++|||||+.+|+++|||||||+||+.+++.+.+.+.. .+|+|+|+|||+++.+.. ||+|++|++|++++.|++
T Consensus 149 kQrv~iAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tvi~vtHd~~~~~~~~~d~v~~l~~G~i~~~g~~ 228 (250)
T 2d2e_A 149 KKRNEILQLLVLEPTYAVLDETDSGLDIDALKVVARGVNAMRGPNFGALVITHYQRILNYIQPDKVHVMMDGRVVATGGP 228 (250)
T ss_dssp HHHHHHHHHHHHCCSEEEEECGGGTTCHHHHHHHHHHHHHHCSTTCEEEEECSSSGGGGTSCCSEEEEEETTEEEEEESH
T ss_pred HHHHHHHHHHHcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhcCCEEEEEECCEEEEEeCH
Confidence 9999999999999999999999999999999999887644 358999999999998875 599999999999999998
Q ss_pred H
Q 037346 564 S 564 (1156)
Q Consensus 564 ~ 564 (1156)
+
T Consensus 229 ~ 229 (250)
T 2d2e_A 229 E 229 (250)
T ss_dssp H
T ss_pred H
Confidence 7
|
| >2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A | Back alignment and structure |
|---|
Probab=100.00 E-value=4e-39 Score=356.30 Aligned_cols=199 Identities=22% Similarity=0.276 Sum_probs=166.2
Q ss_pred ccEEEeeeEEEeCCCCCCCccccceEEeeCCeEEEEEcCCCCChHHHHHHHhCC--CCCCCcEEEEcCe-----------
Q 037346 356 TAIEIIDGSFSWDFSSPNPTLRNINLKVFHGMRVAVCGTVGSGKSSCLSCILGG--VPKESGIIRLCGT----------- 422 (1156)
Q Consensus 356 ~~i~~~~~~f~~~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKSTll~~i~g~--~~~~~G~i~~~g~----------- 422 (1156)
..++++|++|+|+ ++++|+|+||+|++||+++|+||||||||||+++|+|+ ++|++|+|.++|.
T Consensus 19 ~~l~~~~l~~~y~---~~~vl~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~l~Gl~~~~p~~G~I~~~g~~i~~~~~~~~~ 95 (267)
T 2zu0_C 19 HMLSIKDLHVSVE---DKAILRGLSLDVHPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGGTVEFKGKDLLALSPEDRA 95 (267)
T ss_dssp -CEEEEEEEEEET---TEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTCTTCEEEEEEEEETTEEGGGSCHHHHH
T ss_pred ceEEEEeEEEEEC---CEEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEECCcCCHHHHh
Confidence 3699999999995 35799999999999999999999999999999999999 5789999999983
Q ss_pred ---EEEEecCCcCCCc-cHHHHhhcCC----------CCC----HHHHHHHHHHhCCchhhhhCCCCCccccccCCC-CC
Q 037346 423 ---KAYVAQSPWIQSG-KIEENILFGK----------EMD----RERYERVLEACSLKKDLEVLPFGDQTIIGERGI-NL 483 (1156)
Q Consensus 423 ---~~~v~Q~~~~~~~-ti~eni~~~~----------~~~----~~~~~~~~~~~~l~~~~~~~~~g~~t~v~~~g~-~L 483 (1156)
++|++|+|.++.. |++||+.++. ..+ .++.+++++.+++...+. ..... +|
T Consensus 96 ~~~i~~v~Q~~~l~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~----------~~~~~~~L 165 (267)
T 2zu0_C 96 GEGIFMAFQYPVEIPGVSNQFFLQTALNAVRSYRGQETLDRFDFQDLMEEKIALLKMPEDLL----------TRSVNVGF 165 (267)
T ss_dssp HHTEEEECSSCCCCTTCBHHHHHHHHHHHHHHGGGCCCCCHHHHHHHHHHHHHHTTCCTTTT----------TSBTTTTC
T ss_pred hCCEEEEccCccccccccHHHHHHHHHHhhhhhhccccCCHHHHHHHHHHHHHHcCCChhHh----------cCCcccCC
Confidence 7899999987765 9999986531 112 234556677776643211 12233 59
Q ss_pred CHHHHHHHHHHHhhccCCCeeeeeCCCCCcCHHHHHHHHHHHHh--cCCCEEEEEccCCCcccc--CCEEEEEeCCeEEE
Q 037346 484 SGGQKQRIQIARPLYQDADIFLLDDPFSPVDDHTGAHLFKFCWV--SSSKTVIYATHQVEFLPA--ADLILVIKDGKITQ 559 (1156)
Q Consensus 484 SgGqkqRi~lAral~~~~~illlDep~s~lD~~~~~~i~~~~~~--~~~~tvi~vtH~~~~~~~--~d~i~~l~~G~i~~ 559 (1156)
||||||||+|||||+.+|+++||||||++||+.+++.+.+.+.. .+|+|+|++||+++.+.. ||+|++|++|++++
T Consensus 166 SgGq~QRv~iAraL~~~p~lLlLDEPts~LD~~~~~~l~~~l~~l~~~g~tviivtHd~~~~~~~~~d~v~~l~~G~i~~ 245 (267)
T 2zu0_C 166 SGGEKKRNDILQMAVLEPELCILDESDSGLDIDALKVVADGVNSLRDGKRSFIIVTHYQRILDYIKPDYVHVLYQGRIVK 245 (267)
T ss_dssp CHHHHHHHHHHHHHHHCCSEEEEESTTTTCCHHHHHHHHHHHHTTCCSSCEEEEECSSGGGGGTSCCSEEEEEETTEEEE
T ss_pred CHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEeeCHHHHHhhcCCEEEEEECCEEEE
Confidence 99999999999999999999999999999999999999887654 348999999999998864 89999999999999
Q ss_pred ccChHHHH
Q 037346 560 AGKYSDIL 567 (1156)
Q Consensus 560 ~g~~~~l~ 567 (1156)
.|+++++.
T Consensus 246 ~g~~~~~~ 253 (267)
T 2zu0_C 246 SGDFTLVK 253 (267)
T ss_dssp EECTTHHH
T ss_pred EcCHHHHh
Confidence 99987764
|
| >1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=100.00 E-value=5.9e-39 Score=341.78 Aligned_cols=185 Identities=22% Similarity=0.301 Sum_probs=157.6
Q ss_pred ccEEEeeeEEEeCCCCCCCccccceEEeeCCeEEEEEcCCCCChHHHHHHHhCCCCCCCcEEEEcCe--------EEEEe
Q 037346 356 TAIEIIDGSFSWDFSSPNPTLRNINLKVFHGMRVAVCGTVGSGKSSCLSCILGGVPKESGIIRLCGT--------KAYVA 427 (1156)
Q Consensus 356 ~~i~~~~~~f~~~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKSTll~~i~g~~~~~~G~i~~~g~--------~~~v~ 427 (1156)
..++++|++++|+ + ++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|. ++|+|
T Consensus 9 ~~l~~~~ls~~y~---~-~il~~vsl~i~~Ge~~~iiG~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~~~~~~~~i~~v~ 84 (214)
T 1sgw_A 9 SKLEIRDLSVGYD---K-PVLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKPLKGEIIYNGVPITKVKGKIFFLP 84 (214)
T ss_dssp CEEEEEEEEEESS---S-EEEEEEEEEEETTCCEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEEGGGGGGGEEEEC
T ss_pred ceEEEEEEEEEeC---C-eEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEhhhhcCcEEEEe
Confidence 3699999999995 3 7999999999999999999999999999999999999999999999983 79999
Q ss_pred cCCcCCCc-cHHHHhhcCC-----CCCHHHHHHHHHHhCCchhhhhCCCCCccccccCCCCCCHHHHHHHHHHHhhccCC
Q 037346 428 QSPWIQSG-KIEENILFGK-----EMDRERYERVLEACSLKKDLEVLPFGDQTIIGERGINLSGGQKQRIQIARPLYQDA 501 (1156)
Q Consensus 428 Q~~~~~~~-ti~eni~~~~-----~~~~~~~~~~~~~~~l~~~~~~~~~g~~t~v~~~g~~LSgGqkqRi~lAral~~~~ 501 (1156)
|+|.++.. |++||+.++. ..++++.+++++.+++.+. ++++.+||||||||++|||||+.+|
T Consensus 85 q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~l~~~gl~~~------------~~~~~~LSgGqkqrv~laraL~~~p 152 (214)
T 1sgw_A 85 EEIIVPRKISVEDYLKAVASLYGVKVNKNEIMDALESVEVLDL------------KKKLGELSQGTIRRVQLASTLLVNA 152 (214)
T ss_dssp SSCCCCTTSBHHHHHHHHHHHTTCCCCHHHHHHHHHHTTCCCT------------TSBGGGSCHHHHHHHHHHHHTTSCC
T ss_pred CCCcCCCCCCHHHHHHHHHHhcCCchHHHHHHHHHHHcCCCcC------------CCChhhCCHHHHHHHHHHHHHHhCC
Confidence 99988765 9999998752 2235677788888776432 3456789999999999999999999
Q ss_pred CeeeeeCCCCCcCHHHHHHHHHHHHh--cCCCEEEEEccCCCcccc-CCEEEEEeCCeE
Q 037346 502 DIFLLDDPFSPVDDHTGAHLFKFCWV--SSSKTVIYATHQVEFLPA-ADLILVIKDGKI 557 (1156)
Q Consensus 502 ~illlDep~s~lD~~~~~~i~~~~~~--~~~~tvi~vtH~~~~~~~-~d~i~~l~~G~i 557 (1156)
+++||||||++||+.+++.+.+.+.. .+|+|+|++||+++.+.. ||+|+. .+|+|
T Consensus 153 ~lllLDEPts~LD~~~~~~l~~~l~~~~~~g~tiiivtHd~~~~~~~~d~v~~-~~~~~ 210 (214)
T 1sgw_A 153 EIYVLDDPVVAIDEDSKHKVLKSILEILKEKGIVIISSREELSYCDVNENLHK-YSTKI 210 (214)
T ss_dssp SEEEEESTTTTSCTTTHHHHHHHHHHHHHHHSEEEEEESSCCTTSSEEEEGGG-GBC--
T ss_pred CEEEEECCCcCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEE-eCCcc
Confidence 99999999999999999998876643 247899999999999876 777664 44555
|
| >2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str} | Back alignment and structure |
|---|
Probab=100.00 E-value=3e-38 Score=347.87 Aligned_cols=203 Identities=29% Similarity=0.471 Sum_probs=182.8
Q ss_pred EEEEEEEEEcCCCCceeeCCCCCCHHHHHHHHhhcccCCCceEEEcCeeCCCCChHHHhhcCeeeccccccccccchhcc
Q 037346 949 NIRHLQVRYAPNLPLVLRGRTGSGKSTLIQTLFRIVESTAGHILIDGKDISLIGLHDLRTRLSIIPQDPTMFEGTTRSNL 1028 (1156)
Q Consensus 949 ~~~~Vsf~Y~~~~~~vL~G~SGsGKSTL~~lL~rl~~p~~G~I~idG~di~~i~~~~LR~~i~~VpQdp~LF~gTIr~Nl 1028 (1156)
.++||+|..++++.++|.||||||||||+++|+|+++| +|+|.+||.|+.+++...+|++|+||||+|.+|++|+++|+
T Consensus 35 vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~-~G~I~i~g~~i~~~~~~~~~~~i~~v~Q~~~l~~~tv~enl 113 (260)
T 2ghi_A 35 TLKSINFFIPSGTTCALVGHTGSGKSTIAKLLYRFYDA-EGDIKIGGKNVNKYNRNSIRSIIGIVPQDTILFNETIKYNI 113 (260)
T ss_dssp SEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCC-EEEEEETTEEGGGBCHHHHHTTEEEECSSCCCCSEEHHHHH
T ss_pred eeEeeEEEECCCCEEEEECCCCCCHHHHHHHHhccCCC-CeEEEECCEEhhhcCHHHHhccEEEEcCCCcccccCHHHHH
Confidence 46777777777777788899999999999999999987 89999999999999888999999999999999999999999
Q ss_pred CCCC-CCCHHHHHHHHHHcCCChHHHhhcCCcccc------------------ccccccCCCEEEEecCCcCCCHHHHHH
Q 037346 1029 DPLE-EHADEQIWEALDKCQLGDEVRKKKGKLDSQ------------------GRVLLKKSKVLVLDEATASVDTATDNQ 1089 (1156)
Q Consensus 1029 ~~~~-~~~deei~~al~~~~l~~~i~~lp~gl~s~------------------ARALLr~~~ILiLDEaTS~LD~~te~~ 1089 (1156)
.++. ...++++.++++.+++.+++..+|+++++. ||||+++|+|||||||||+||+.+.+.
T Consensus 114 ~~~~~~~~~~~~~~~l~~~~l~~~~~~l~~~~~~~~~~~~~~LSgGqkqRv~lAraL~~~p~lllLDEPts~LD~~~~~~ 193 (260)
T 2ghi_A 114 LYGKLDATDEEVIKATKSAQLYDFIEALPKKWDTIVGNKGMKLSGGERQRIAIARCLLKDPKIVIFDEATSSLDSKTEYL 193 (260)
T ss_dssp HTTCTTCCHHHHHHHHHHTTCHHHHHTSTTGGGCEESSSSBCCCHHHHHHHHHHHHHHHCCSEEEEECCCCTTCHHHHHH
T ss_pred hccCCCCCHHHHHHHHHHhCCHHHHHhccccccccccCCcCcCCHHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHH
Confidence 7653 345778999999999999998888766531 899999999999999999999999999
Q ss_pred HHHHHHHhcCCceEEEeecCcccccccCEEEEEeCcEEeeecChhHHhcCCCChHHHHHHHHhc
Q 037346 1090 IQQTLRQHFSDCTVVTIAHRITSVLDSAMVLLLNHGLIKEYDSPTKLLENKSSSFAQLVAEYTS 1153 (1156)
Q Consensus 1090 I~~~l~~~~~~~TvI~IaHrl~ti~~~D~I~Vl~~G~IvE~G~~~eLl~~~~g~f~~l~~~~~~ 1153 (1156)
+.+.|++..+++|||+|||+++.+..||+|++|++|+|++.|+|+++++. .+.|.+++..+..
T Consensus 194 i~~~l~~l~~~~tviivtH~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~-~~~~~~~~~~~~~ 256 (260)
T 2ghi_A 194 FQKAVEDLRKNRTLIIIAHRLSTISSAESIILLNKGKIVEKGTHKDLLKL-NGEYAEMWNMQSG 256 (260)
T ss_dssp HHHHHHHHTTTSEEEEECSSGGGSTTCSEEEEEETTEEEEEECHHHHHHH-TSHHHHHHHHHHC
T ss_pred HHHHHHHhcCCCEEEEEcCCHHHHHhCCEEEEEECCEEEEECCHHHHHhc-ChHHHHHHHhhhh
Confidence 99999998778999999999999989999999999999999999999975 6889998876543
|
| >1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=100.00 E-value=4.7e-39 Score=351.43 Aligned_cols=203 Identities=31% Similarity=0.537 Sum_probs=185.3
Q ss_pred EEEEEEEEEcCCCCceeeCCCCCCHHHHHHHHhhcccCCCceEEEcCeeCCCCChHHHhhcCeeeccccccccccchhcc
Q 037346 949 NIRHLQVRYAPNLPLVLRGRTGSGKSTLIQTLFRIVESTAGHILIDGKDISLIGLHDLRTRLSIIPQDPTMFEGTTRSNL 1028 (1156)
Q Consensus 949 ~~~~Vsf~Y~~~~~~vL~G~SGsGKSTL~~lL~rl~~p~~G~I~idG~di~~i~~~~LR~~i~~VpQdp~LF~gTIr~Nl 1028 (1156)
.++||||..++++.++|.||||||||||+++|+|+++|++|+|.+||.++.+.+...+|++|++|||+|.+|.+|++|||
T Consensus 17 vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~l~~~tv~enl 96 (243)
T 1mv5_A 17 ILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQPTAGEITIDGQPIDNISLENWRSQIGFVSQDSAIMAGTIRENL 96 (243)
T ss_dssp SEEEEEEEECTTEEEEEECCTTSSHHHHHHHHTTSSCCSBSCEEETTEESTTTSCSCCTTTCCEECCSSCCCCEEHHHHT
T ss_pred eEEEeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEhhhCCHHHHHhhEEEEcCCCccccccHHHHH
Confidence 58999999999988899999999999999999999999999999999999988888889999999999999999999999
Q ss_pred CCC-C-CCCHHHHHHHHHHcCCChHHHhhcCCcccc------------------ccccccCCCEEEEecCCcCCCHHHHH
Q 037346 1029 DPL-E-EHADEQIWEALDKCQLGDEVRKKKGKLDSQ------------------GRVLLKKSKVLVLDEATASVDTATDN 1088 (1156)
Q Consensus 1029 ~~~-~-~~~deei~~al~~~~l~~~i~~lp~gl~s~------------------ARALLr~~~ILiLDEaTS~LD~~te~ 1088 (1156)
.++ . ..++++++++++.+++.+++..+|.|+++. ||||+++|+|||||||||+||+++.+
T Consensus 97 ~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~gl~~~~~~~~~~LSgGq~qrv~lAral~~~p~lllLDEPts~LD~~~~~ 176 (243)
T 1mv5_A 97 TYGLEGDYTDEDLWQVLDLAFARSFVENMPDQLNTEVGERGVKISGGQRQRLAIARAFLRNPKILMLDEATASLDSESES 176 (243)
T ss_dssp TSCTTSCSCHHHHHHHHHHHTCTTTTTSSTTGGGCEESTTSBCCCHHHHHHHHHHHHHHHCCSEEEEECCSCSSCSSSCC
T ss_pred hhhccCCCCHHHHHHHHHHhChHHHHHhCccchhchhccCcCcCCHHHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHH
Confidence 875 2 356788999999999999998888766532 89999999999999999999999999
Q ss_pred HHHHHHHHhcCCceEEEeecCcccccccCEEEEEeCcEEeeecChhHHhcCCCChHHHHHHHHh
Q 037346 1089 QIQQTLRQHFSDCTVVTIAHRITSVLDSAMVLLLNHGLIKEYDSPTKLLENKSSSFAQLVAEYT 1152 (1156)
Q Consensus 1089 ~I~~~l~~~~~~~TvI~IaHrl~ti~~~D~I~Vl~~G~IvE~G~~~eLl~~~~g~f~~l~~~~~ 1152 (1156)
.|.+.|++..+++|||+|||+++.+..||+|++|++|++++.|+|++++++ .+.|++++..+.
T Consensus 177 ~i~~~l~~~~~~~tvi~vtH~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~-~~~~~~~~~~~~ 239 (243)
T 1mv5_A 177 MVQKALDSLMKGRTTLVIAHRLSTIVDADKIYFIEKGQITGSGKHNELVAT-HPLYAKYVSEQL 239 (243)
T ss_dssp HHHHHHHHHHTTSEEEEECCSHHHHHHCSEEEEEETTEECCCSCHHHHHHH-CHHHHHHHHCCC
T ss_pred HHHHHHHHhcCCCEEEEEeCChHHHHhCCEEEEEECCEEEEeCCHHHHHhc-cHHHHHHHHhhh
Confidence 999999987778999999999999888999999999999999999999875 567888876543
|
| >3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.2e-38 Score=365.40 Aligned_cols=207 Identities=37% Similarity=0.642 Sum_probs=187.9
Q ss_pred CCCCCCCCeEEEEEEEEEEcCCC---------------CceeeCCCCCCHHHHHHHHhhcccCCCceEEEcCeeCCCCCh
Q 037346 939 NNSRPSHGEVNIRHLQVRYAPNL---------------PLVLRGRTGSGKSTLIQTLFRIVESTAGHILIDGKDISLIGL 1003 (1156)
Q Consensus 939 ~~~~p~~g~I~~~~Vsf~Y~~~~---------------~~vL~G~SGsGKSTL~~lL~rl~~p~~G~I~idG~di~~i~~ 1003 (1156)
...||..+.|+++||+++|+.+. .++|.||||||||||+++|+|+++ ++|+|.+||.|+.+++.
T Consensus 11 ~~~~~~~~~i~~~~l~~~y~~~~~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~-~~G~I~i~G~~i~~~~~ 89 (390)
T 3gd7_A 11 DDIWPSGGQMTVKDLTAKYTEGGNAILENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLN-TEGEIQIDGVSWDSITL 89 (390)
T ss_dssp -CCSSSSCCEEEEEEEEESSSSSCCSEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTCSE-EEEEEEESSCBTTSSCH
T ss_pred CcCCCCCCeEEEEEEEEEecCCCeEEeeceeEEEcCCCEEEEECCCCChHHHHHHHHhCCCC-CCeEEEECCEECCcCCh
Confidence 44588888999999999995332 234669999999999999999998 99999999999999999
Q ss_pred HHHhhcCeeeccccccccccchhccCCCCCCCHHHHHHHHHHcCCChHHHhhcCCcc----------cc--------ccc
Q 037346 1004 HDLRTRLSIIPQDPTMFEGTTRSNLDPLEEHADEQIWEALDKCQLGDEVRKKKGKLD----------SQ--------GRV 1065 (1156)
Q Consensus 1004 ~~LR~~i~~VpQdp~LF~gTIr~Nl~~~~~~~deei~~al~~~~l~~~i~~lp~gl~----------s~--------ARA 1065 (1156)
+.+|+.|++|||++.+|.+|+++|+.++....+++++++++.+++.+++...|.+++ |+ |||
T Consensus 90 ~~~rr~ig~v~Q~~~lf~~tv~enl~~~~~~~~~~v~~~l~~~~L~~~~~~~p~~l~~~i~~~g~~LSGGqrQRvalARA 169 (390)
T 3gd7_A 90 EQWRKAFGVIPQKVFIFSGTFRKNLDPNAAHSDQEIWKVADEVGLRSVIEQFPGKLDFVLVDGGCVLSHGHKQLMCLARS 169 (390)
T ss_dssp HHHHHTEEEESCCCCCCSEEHHHHHCTTCCSCHHHHHHHHHHTTCHHHHTTSTTGGGCEECTTTTTSCHHHHHHHHHHHH
T ss_pred HHHhCCEEEEcCCcccCccCHHHHhhhccccCHHHHHHHHHHhCCHHHHhhcccccccccccccccCCHHHHHHHHHHHH
Confidence 999999999999999999999999987777778999999999999999999998843 22 899
Q ss_pred cccCCCEEEEecCCcCCCHHHHHHHHHHHHHhcCCceEEEeecCcccccccCEEEEEeCcEEeeecChhHHhcCCCChHH
Q 037346 1066 LLKKSKVLVLDEATASVDTATDNQIQQTLRQHFSDCTVVTIAHRITSVLDSAMVLLLNHGLIKEYDSPTKLLENKSSSFA 1145 (1156)
Q Consensus 1066 LLr~~~ILiLDEaTS~LD~~te~~I~~~l~~~~~~~TvI~IaHrl~ti~~~D~I~Vl~~G~IvE~G~~~eLl~~~~g~f~ 1145 (1156)
|+++|+|||||||||+||+.+...+++.|++..+++|+|+|||+++.+..||||+||++|+|++.|+|+|+++++...|.
T Consensus 170 L~~~P~lLLLDEPts~LD~~~~~~l~~~l~~~~~~~tvi~vtHd~e~~~~aDri~vl~~G~i~~~g~~~el~~~p~~~~v 249 (390)
T 3gd7_A 170 VLSKAKILLLDEPSAHLDPVTYQIIRRTLKQAFADCTVILCEARIEAMLECDQFLVIEENKVRQYDSILELYHYPADRFV 249 (390)
T ss_dssp HHTTCCEEEEESHHHHSCHHHHHHHHHHHHTTTTTSCEEEECSSSGGGTTCSEEEEEETTEEEEESSHHHHHHCCSBHHH
T ss_pred HhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHhCCCEEEEEEcCHHHHHhCCEEEEEECCEEEEECCHHHHHhCCCchHH
Confidence 99999999999999999999999999999988789999999999999999999999999999999999999998777665
Q ss_pred H
Q 037346 1146 Q 1146 (1156)
Q Consensus 1146 ~ 1146 (1156)
.
T Consensus 250 a 250 (390)
T 3gd7_A 250 A 250 (390)
T ss_dssp H
T ss_pred H
Confidence 3
|
| >2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=4.8e-38 Score=348.13 Aligned_cols=201 Identities=24% Similarity=0.378 Sum_probs=173.7
Q ss_pred EEEEEEEEcCCCCceeeCCCCCCHHHHHHHHhhcccCCCceEEEcCeeCCCCChHHHhhcCeeeccccccccccchhccC
Q 037346 950 IRHLQVRYAPNLPLVLRGRTGSGKSTLIQTLFRIVESTAGHILIDGKDISLIGLHDLRTRLSIIPQDPTMFEGTTRSNLD 1029 (1156)
Q Consensus 950 ~~~Vsf~Y~~~~~~vL~G~SGsGKSTL~~lL~rl~~p~~G~I~idG~di~~i~~~~LR~~i~~VpQdp~LF~gTIr~Nl~ 1029 (1156)
++||+|..++++.++|.||||||||||+++|+|+++|++|+|.+||.|+.+.+...+|++|+||||+|.+|.+|++|||.
T Consensus 35 l~~vsl~i~~Ge~~~i~G~nGsGKSTLlk~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~i~~v~Q~~~l~~~tv~enl~ 114 (271)
T 2ixe_A 35 LQGLTFTLYPGKVTALVGPNGSGKSTVAALLQNLYQPTGGKVLLDGEPLVQYDHHYLHTQVAAVGQEPLLFGRSFRENIA 114 (271)
T ss_dssp EEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEEGGGBCHHHHHHHEEEECSSCCCCSSBHHHHHH
T ss_pred eEeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCCEEEECCEEcccCCHHHHhccEEEEecCCccccccHHHHHh
Confidence 33334443444445677999999999999999999999999999999999888888999999999999999999999997
Q ss_pred CCCC-CCH-HHHHHHHHHcCCChHHHhhcCCcccc------------------ccccccCCCEEEEecCCcCCCHHHHHH
Q 037346 1030 PLEE-HAD-EQIWEALDKCQLGDEVRKKKGKLDSQ------------------GRVLLKKSKVLVLDEATASVDTATDNQ 1089 (1156)
Q Consensus 1030 ~~~~-~~d-eei~~al~~~~l~~~i~~lp~gl~s~------------------ARALLr~~~ILiLDEaTS~LD~~te~~ 1089 (1156)
++.. ..+ +++.++++.+++.+++..+|.|+++. ||||+++|+|||||||||+||+.+.+.
T Consensus 115 ~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~gl~~~~~~~~~~LSgGq~QRv~lAraL~~~p~lllLDEPts~LD~~~~~~ 194 (271)
T 2ixe_A 115 YGLTRTPTMEEITAVAMESGAHDFISGFPQGYDTEVGETGNQLSGGQRQAVALARALIRKPRLLILDNATSALDAGNQLR 194 (271)
T ss_dssp TTCSSCCCHHHHHHHHHHHTCHHHHHHSTTGGGSBCCGGGTTSCHHHHHHHHHHHHHTTCCSEEEEESTTTTCCHHHHHH
T ss_pred hhcccCChHHHHHHHHHHHhHHHHHHhhhcchhhhhcCCcCCCCHHHHHHHHHHHHHhcCCCEEEEECCccCCCHHHHHH
Confidence 6532 333 67888888889988888877666432 899999999999999999999999999
Q ss_pred HHHHHHHhcC--CceEEEeecCcccccccCEEEEEeCcEEeeecChhHHhcCCCChHHHHHHHH
Q 037346 1090 IQQTLRQHFS--DCTVVTIAHRITSVLDSAMVLLLNHGLIKEYDSPTKLLENKSSSFAQLVAEY 1151 (1156)
Q Consensus 1090 I~~~l~~~~~--~~TvI~IaHrl~ti~~~D~I~Vl~~G~IvE~G~~~eLl~~~~g~f~~l~~~~ 1151 (1156)
|.+.|++..+ ++|||+|||+++.+..||+|++|++|+|++.|++++++++ .+.|.++++.+
T Consensus 195 i~~~l~~~~~~~g~tviivtHd~~~~~~~d~v~~l~~G~i~~~g~~~~l~~~-~~~~~~~~~~~ 257 (271)
T 2ixe_A 195 VQRLLYESPEWASRTVLLITQQLSLAERAHHILFLKEGSVCEQGTHLQLMER-GGCYRSMVEAL 257 (271)
T ss_dssp HHHHHHHCTTTTTSEEEEECSCHHHHTTCSEEEEEETTEEEEEECHHHHHHH-TSHHHHHHHC-
T ss_pred HHHHHHHHHhhcCCEEEEEeCCHHHHHhCCEEEEEECCEEEEECCHHHHHhC-cHHHHHHHHHh
Confidence 9999998754 8999999999999988999999999999999999999975 58899988754
|
| >2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A | Back alignment and structure |
|---|
Probab=100.00 E-value=2.9e-36 Score=375.06 Aligned_cols=193 Identities=22% Similarity=0.315 Sum_probs=142.2
Q ss_pred EEEEEEEEcCCCCceeeCCCCCCHHHHHHHHh-hcc----c---CCCc-------------eEEEcCeeCCCCCh-----
Q 037346 950 IRHLQVRYAPNLPLVLRGRTGSGKSTLIQTLF-RIV----E---STAG-------------HILIDGKDISLIGL----- 1003 (1156)
Q Consensus 950 ~~~Vsf~Y~~~~~~vL~G~SGsGKSTL~~lL~-rl~----~---p~~G-------------~I~idG~di~~i~~----- 1003 (1156)
++||+|..++++-++|.|+||||||||++.|+ +.. . +..| .|.+||.+|..-+.
T Consensus 640 Lk~Vsl~I~~Geiv~I~G~nGSGKSTLl~~ll~g~l~~~l~~~~~~~G~~~~i~G~~~~~~~I~idq~pig~~~rs~pat 719 (972)
T 2r6f_A 640 LKNVSVKIPLGTFVAVTGVSGSGKSTLVNEVLYKALAQKLHRAKAKPGEHRDIRGLEHLDKVIDIDQSPIGRTPRSNPAT 719 (972)
T ss_dssp CCSEEEEEESSSEEECCBCTTSSHHHHHTTTHHHHHHHHHHCCCCCCCSCSEEECGGGCSEEEEECSSCSCSSTTCCHHH
T ss_pred cccceEEEcCCCEEEEEcCCCCCHHHHHHHHHHHHHHHhhcCCCCCCCceeeeccccccceEEEEcCcccccCccccchh
Confidence 78899999999999999999999999999864 221 1 1233 48899988753221
Q ss_pred -----HHHh---------hcCeeecccccc---------------------c----------------------------
Q 037346 1004 -----HDLR---------TRLSIIPQDPTM---------------------F---------------------------- 1020 (1156)
Q Consensus 1004 -----~~LR---------~~i~~VpQdp~L---------------------F---------------------------- 1020 (1156)
+..| +.+||+||...+ |
T Consensus 720 y~~v~d~ir~lfa~~~ear~~Gy~~~~fsfn~~ggrC~~C~g~G~i~~em~fl~~v~~~ce~c~G~r~~~e~l~v~~~g~ 799 (972)
T 2r6f_A 720 YTGVFDDIRDVFASTNEAKVRGYKKGRFSFNVKGGRCEACHGDGIIKIEMHFLPDVYVPCEVCHGKRYNRETLEVTYKGK 799 (972)
T ss_dssp HHTHHHHHHHHHHTSHHHHHTTCCTTTTCTTSTTTBCTTTTTCSEEEECCSSSCCEEEECTTTTTCCBCTTGGGCCBTTB
T ss_pred hhhHHHHHHHHhccCHHHHHhcccccccccccccccccccccccceeeehhccccccccccccccccccchhhhhhccCC
Confidence 1222 346888885321 1
Q ss_pred ------cccchhccCCCCCCC-HHHHHHHHHHcCCCh-HHHhhcCCcccc-------ccccccCC---CEEEEecCCcCC
Q 037346 1021 ------EGTTRSNLDPLEEHA-DEQIWEALDKCQLGD-EVRKKKGKLDSQ-------GRVLLKKS---KVLVLDEATASV 1082 (1156)
Q Consensus 1021 ------~gTIr~Nl~~~~~~~-deei~~al~~~~l~~-~i~~lp~gl~s~-------ARALLr~~---~ILiLDEaTS~L 1082 (1156)
.-|+.+|+.++.... .++..++|+.++|.. .....+..|..+ ||||+++| +||||||||++|
T Consensus 800 sI~dvl~ltv~e~l~~~~~~~~~~~~~~~L~~~gL~~~~l~~~~~~LSGGekQRv~LAraL~~~p~~p~lLILDEPTsGL 879 (972)
T 2r6f_A 800 NIAEVLDMTVEDALDFFASIPKIKRKLETLYDVGLGYMKLGQPATTLSGGEAQRVKLAAELHRRSNGRTLYILDEPTTGL 879 (972)
T ss_dssp CHHHHHTSBHHHHHHHTCSCHHHHHHHHHHHHTTCSSSBTTCCGGGCCHHHHHHHHHHHHHSSCCCSCEEEEEECTTTTC
T ss_pred CHHHhhhcCHHHHHHHHhcchhHHHHHHHHHHcCCCcccccCchhhCCHHHHHHHHHHHHHhcCCCCCCEEEEECCCCCC
Confidence 113334443332222 234668899999976 444444444433 89999875 999999999999
Q ss_pred CHHHHHHHHHHHHHhc-CCceEEEeecCcccccccCEEEEE------eCcEEeeecChhHHhcCCCC
Q 037346 1083 DTATDNQIQQTLRQHF-SDCTVVTIAHRITSVLDSAMVLLL------NHGLIKEYDSPTKLLENKSS 1142 (1156)
Q Consensus 1083 D~~te~~I~~~l~~~~-~~~TvI~IaHrl~ti~~~D~I~Vl------~~G~IvE~G~~~eLl~~~~g 1142 (1156)
|+.+.+.|.+.|+++. +++|||+|+|+++.+..||+|++| ++|+|++.|+|+++++++.+
T Consensus 880 D~~~~~~l~~lL~~L~~~G~TVIvisHdl~~i~~aDrIivL~p~gG~~~G~Iv~~g~~~el~~~~~~ 946 (972)
T 2r6f_A 880 HVDDIARLLDVLHRLVDNGDTVLVIEHNLDVIKTADYIIDLGPEGGDRGGQIVAVGTPEEVAEVKES 946 (972)
T ss_dssp CHHHHHHHHHHHHHHHHTTCEEEEECCCHHHHTTCSEEEEECSSSTTSCCSEEEEESHHHHHTCTTC
T ss_pred CHHHHHHHHHHHHHHHhCCCEEEEEcCCHHHHHhCCEEEEEcCCCCCCCCEEEEecCHHHHHhCchh
Confidence 9999999999998764 589999999999999999999999 68999999999999976543
|
| >3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C | Back alignment and structure |
|---|
Probab=100.00 E-value=6.8e-36 Score=339.36 Aligned_cols=196 Identities=24% Similarity=0.383 Sum_probs=167.3
Q ss_pred EEEEEEEcCCCCceeeCCCCCCHHHHHHHHhhcccCCCceEEEcCeeCCCCChHHH---hhcCeeeccccccccc-cchh
Q 037346 951 RHLQVRYAPNLPLVLRGRTGSGKSTLIQTLFRIVESTAGHILIDGKDISLIGLHDL---RTRLSIIPQDPTMFEG-TTRS 1026 (1156)
Q Consensus 951 ~~Vsf~Y~~~~~~vL~G~SGsGKSTL~~lL~rl~~p~~G~I~idG~di~~i~~~~L---R~~i~~VpQdp~LF~g-TIr~ 1026 (1156)
+||||..++++.++|.||||||||||+++|.|+++|++|+|.+||.|+..++.+++ |++||+|||++.+|.. |+++
T Consensus 45 ~~vsl~i~~Gei~~IiGpnGaGKSTLlr~i~GL~~p~~G~I~i~G~~i~~~~~~~~~~~r~~Ig~v~Q~~~l~~~~TV~e 124 (366)
T 3tui_C 45 NNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEGSVLVDGQELTTLSESELTKARRQIGMIFQHFNLLSSRTVFG 124 (366)
T ss_dssp EEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECSSCCHHHHHHHHTTEEEECSSCCCCTTSCHHH
T ss_pred EeeEEEEcCCCEEEEEcCCCchHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHHHHhCcEEEEeCCCccCCCCCHHH
Confidence 33333333444456779999999999999999999999999999999999987654 7889999999999876 9999
Q ss_pred ccCCC---CCCC----HHHHHHHHHHcCCChHHHhhcCCcccc-------ccccccCCCEEEEecCCcCCCHHHHHHHHH
Q 037346 1027 NLDPL---EEHA----DEQIWEALDKCQLGDEVRKKKGKLDSQ-------GRVLLKKSKVLVLDEATASVDTATDNQIQQ 1092 (1156)
Q Consensus 1027 Nl~~~---~~~~----deei~~al~~~~l~~~i~~lp~gl~s~-------ARALLr~~~ILiLDEaTS~LD~~te~~I~~ 1092 (1156)
|+.+. ...+ .+.+.++|+.+||.+.....|..|..+ ||||+.+|+|||||||||+||+.+.+.|.+
T Consensus 125 nv~~~~~~~~~~~~~~~~~v~~lL~~vgL~~~~~~~~~~LSGGqkQRVaIArAL~~~P~lLLlDEPTs~LD~~~~~~i~~ 204 (366)
T 3tui_C 125 NVALPLELDNTPKDEVKRRVTELLSLVGLGDKHDSYPSNLSGGQKQRVAIARALASNPKVLLCDQATSALDPATTRSILE 204 (366)
T ss_dssp HHHHHHHHSCCCHHHHHHHHHHHHHHHTCGGGTTCCTTTSCHHHHHHHHHHHHTTTCCSEEEEESTTTTSCHHHHHHHHH
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEECCCccCCHHHHHHHHH
Confidence 99642 1122 346889999999999888888877655 899999999999999999999999999999
Q ss_pred HHHHhc--CCceEEEeecCcccccc-cCEEEEEeCcEEeeecChhHHhcCCCChHHH
Q 037346 1093 TLRQHF--SDCTVVTIAHRITSVLD-SAMVLLLNHGLIKEYDSPTKLLENKSSSFAQ 1146 (1156)
Q Consensus 1093 ~l~~~~--~~~TvI~IaHrl~ti~~-~D~I~Vl~~G~IvE~G~~~eLl~~~~g~f~~ 1146 (1156)
.|+++. .++|||+|||+++.+.. ||||+||++|+|++.|++++++.++...|.+
T Consensus 205 lL~~l~~~~g~Tii~vTHdl~~~~~~aDrv~vl~~G~iv~~g~~~ev~~~p~~~~~~ 261 (366)
T 3tui_C 205 LLKDINRRLGLTILLITHEMDVVKRICDCVAVISNGELIEQDTVSEVFSHPKTPLAQ 261 (366)
T ss_dssp HHHHHHHHSCCEEEEEESCHHHHHHHCSEEEEEETTEEEECCBHHHHHSSCCSHHHH
T ss_pred HHHHHHHhCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhCCCcHHHH
Confidence 998874 38999999999999875 9999999999999999999999877666643
|
| >3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-35 Score=328.78 Aligned_cols=192 Identities=24% Similarity=0.345 Sum_probs=167.5
Q ss_pred EEEEEEEEEEcCCCCceeeCCCCCCHHHHHHHHhhcccCCCceEEEcCeeCC--CCChHHHhhcCeeecccc--cccccc
Q 037346 948 VNIRHLQVRYAPNLPLVLRGRTGSGKSTLIQTLFRIVESTAGHILIDGKDIS--LIGLHDLRTRLSIIPQDP--TMFEGT 1023 (1156)
Q Consensus 948 I~~~~Vsf~Y~~~~~~vL~G~SGsGKSTL~~lL~rl~~p~~G~I~idG~di~--~i~~~~LR~~i~~VpQdp--~LF~gT 1023 (1156)
..++||||..++++.++|.||||||||||+++|.|+++|++|+|.+||.|+. ..+...+|++||+|||+| .+|..|
T Consensus 22 ~~L~~isl~i~~Ge~~~iiGpnGsGKSTLl~~l~Gl~~p~~G~I~~~G~~i~~~~~~~~~~~~~ig~v~Q~~~~~~~~~t 101 (275)
T 3gfo_A 22 HALKGINMNIKRGEVTAILGGNGVGKSTLFQNFNGILKPSSGRILFDNKPIDYSRKGIMKLRESIGIVFQDPDNQLFSAS 101 (275)
T ss_dssp EEEEEEEEEEETTSEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEECCCSHHHHHHHHHSEEEECSSGGGTCCSSB
T ss_pred eEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCeEEEECCEECCcccccHHHHhCcEEEEEcCcccccccCc
Confidence 3678888888888888899999999999999999999999999999999994 344567899999999998 578899
Q ss_pred chhccCCC---CCCC----HHHHHHHHHHcCCChHHHhhcCCcccc-------ccccccCCCEEEEecCCcCCCHHHHHH
Q 037346 1024 TRSNLDPL---EEHA----DEQIWEALDKCQLGDEVRKKKGKLDSQ-------GRVLLKKSKVLVLDEATASVDTATDNQ 1089 (1156)
Q Consensus 1024 Ir~Nl~~~---~~~~----deei~~al~~~~l~~~i~~lp~gl~s~-------ARALLr~~~ILiLDEaTS~LD~~te~~ 1089 (1156)
+++|+.++ ...+ .+.+.++++.+++.+.....|..|..+ ||||+.+|+|||||||||+||+.+.+.
T Consensus 102 v~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGqkQRv~iAraL~~~P~lLlLDEPts~LD~~~~~~ 181 (275)
T 3gfo_A 102 VYQDVSFGAVNMKLPEDEIRKRVDNALKRTGIEHLKDKPTHCLSFGQKKRVAIAGVLVMEPKVLILDEPTAGLDPMGVSE 181 (275)
T ss_dssp HHHHHHHHHHTSCCCHHHHHHHHHHHHHHTTCGGGTTSBGGGSCHHHHHHHHHHHHHTTCCSEEEEECTTTTCCHHHHHH
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhcCCcccCCHHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHH
Confidence 99999642 1122 345889999999988877777777654 899999999999999999999999999
Q ss_pred HHHHHHHhc--CCceEEEeecCcccccc-cCEEEEEeCcEEeeecChhHHhcC
Q 037346 1090 IQQTLRQHF--SDCTVVTIAHRITSVLD-SAMVLLLNHGLIKEYDSPTKLLEN 1139 (1156)
Q Consensus 1090 I~~~l~~~~--~~~TvI~IaHrl~ti~~-~D~I~Vl~~G~IvE~G~~~eLl~~ 1139 (1156)
+.+.|+++. +++|||+|||+++.+.. ||||++|++|+|++.|++++++.+
T Consensus 182 i~~~l~~l~~~~g~tvi~vtHdl~~~~~~~drv~~l~~G~i~~~g~~~~~~~~ 234 (275)
T 3gfo_A 182 IMKLLVEMQKELGITIIIATHDIDIVPLYCDNVFVMKEGRVILQGNPKEVFAE 234 (275)
T ss_dssp HHHHHHHHHHHHCCEEEEEESCCSSGGGGCSEEEEEETTEEEEEECHHHHTHH
T ss_pred HHHHHHHHHhhCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEECCHHHHhcC
Confidence 999998865 38999999999999875 999999999999999999999864
|
| >3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.5e-35 Score=321.59 Aligned_cols=190 Identities=19% Similarity=0.297 Sum_probs=164.4
Q ss_pred EEEEEEEEEEcCCCCceeeCCCCCCHHHHHHHHhhcccCCCceEEEcCeeCCCCChHHH----hhcCeeeccccccccc-
Q 037346 948 VNIRHLQVRYAPNLPLVLRGRTGSGKSTLIQTLFRIVESTAGHILIDGKDISLIGLHDL----RTRLSIIPQDPTMFEG- 1022 (1156)
Q Consensus 948 I~~~~Vsf~Y~~~~~~vL~G~SGsGKSTL~~lL~rl~~p~~G~I~idG~di~~i~~~~L----R~~i~~VpQdp~LF~g- 1022 (1156)
..++||||..++++.++|.||||||||||+++|.|+++|++|+|.+||.|+.+++...+ |++|++|||+|.+|.+
T Consensus 19 ~~L~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~~~~i~~v~Q~~~l~~~~ 98 (235)
T 3tif_A 19 YALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPTEGEVYIDNIKTNDLDDDELTKIRRDKIGFVFQQFNLIPLL 98 (235)
T ss_dssp EEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHHHHHHEEEECTTCCCCTTS
T ss_pred eeEEeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCceEEEECCEEcccCCHHHHHHHhhccEEEEecCCccCCCC
Confidence 47899999999999899999999999999999999999999999999999999987764 4579999999999987
Q ss_pred cchhccCCC------CCCC----HHHHHHHHHHcCCChHH-HhhcCCcccc-------ccccccCCCEEEEecCCcCCCH
Q 037346 1023 TTRSNLDPL------EEHA----DEQIWEALDKCQLGDEV-RKKKGKLDSQ-------GRVLLKKSKVLVLDEATASVDT 1084 (1156)
Q Consensus 1023 TIr~Nl~~~------~~~~----deei~~al~~~~l~~~i-~~lp~gl~s~-------ARALLr~~~ILiLDEaTS~LD~ 1084 (1156)
|++||+.+. .... .+++.++++.+++.+.. ...|..|..+ ||||+++|+|||||||||+||+
T Consensus 99 tv~enl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~QRv~iAral~~~p~llllDEPts~LD~ 178 (235)
T 3tif_A 99 TALENVELPLIFKYRGAMSGEERRKRALECLKMAELEERFANHKPNQLSGGQQQRVAIARALANNPPIILADQPTWALDS 178 (235)
T ss_dssp CHHHHHHHHHHTCSSSCCCHHHHHHHHHHHHHHTTCCGGGTTCCGGGSCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCH
T ss_pred cHHHHHHHHHHhhhccCCCHHHHHHHHHHHHHHCCCChhhhhCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCH
Confidence 999998531 1222 34578899999998754 5556666544 8999999999999999999999
Q ss_pred HHHHHHHHHHHHhcC--CceEEEeecCcccccccCEEEEEeCcEEeeecChhHHh
Q 037346 1085 ATDNQIQQTLRQHFS--DCTVVTIAHRITSVLDSAMVLLLNHGLIKEYDSPTKLL 1137 (1156)
Q Consensus 1085 ~te~~I~~~l~~~~~--~~TvI~IaHrl~ti~~~D~I~Vl~~G~IvE~G~~~eLl 1137 (1156)
.+...|.+.|+++.+ ++|||+|||+++....||+|++|++|+|++.|+++++.
T Consensus 179 ~~~~~i~~~l~~l~~~~g~tvi~vtHd~~~~~~~d~i~~l~~G~i~~~~~~~~~~ 233 (235)
T 3tif_A 179 KTGEKIMQLLKKLNEEDGKTVVVVTHDINVARFGERIIYLKDGEVEREEKLRGFD 233 (235)
T ss_dssp HHHHHHHHHHHHHHHHHCCEEEEECSCHHHHTTSSEEEEEETTEEEEEEECC---
T ss_pred HHHHHHHHHHHHHHHHcCCEEEEEcCCHHHHHhCCEEEEEECCEEEEEcChhhhc
Confidence 999999999988753 89999999999988889999999999999999988764
|
| >2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.6e-35 Score=320.09 Aligned_cols=190 Identities=17% Similarity=0.342 Sum_probs=164.7
Q ss_pred EEEEEEEEEEcCCCCceeeCCCCCCHHHHHHHHhhcccCCCceEEEcCeeCCCCChHHHhhcCeeeccccccccccchhc
Q 037346 948 VNIRHLQVRYAPNLPLVLRGRTGSGKSTLIQTLFRIVESTAGHILIDGKDISLIGLHDLRTRLSIIPQDPTMFEGTTRSN 1027 (1156)
Q Consensus 948 I~~~~Vsf~Y~~~~~~vL~G~SGsGKSTL~~lL~rl~~p~~G~I~idG~di~~i~~~~LR~~i~~VpQdp~LF~gTIr~N 1027 (1156)
..++||||..++++.++|.||||||||||+++|+|+++|++|+|.+|| +++||||+|.+|+.|+++|
T Consensus 19 ~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~g-------------~i~~v~Q~~~~~~~tv~en 85 (237)
T 2cbz_A 19 PTLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDKVEGHVAIKG-------------SVAYVPQQAWIQNDSLREN 85 (237)
T ss_dssp CSEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTCSEEEEEEEEECS-------------CEEEECSSCCCCSEEHHHH
T ss_pred ceeeeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECC-------------EEEEEcCCCcCCCcCHHHH
Confidence 357888888888888889999999999999999999999999999999 3999999999999999999
Q ss_pred cCCCCCCCHHHHHHHHHHcCCChHHHhhcCCccc-----------c-------ccccccCCCEEEEecCCcCCCHHHHHH
Q 037346 1028 LDPLEEHADEQIWEALDKCQLGDEVRKKKGKLDS-----------Q-------GRVLLKKSKVLVLDEATASVDTATDNQ 1089 (1156)
Q Consensus 1028 l~~~~~~~deei~~al~~~~l~~~i~~lp~gl~s-----------~-------ARALLr~~~ILiLDEaTS~LD~~te~~ 1089 (1156)
|.++....+++..++++.+++.+.+..+|.++++ + ||||+++|+|||||||||+||+++.+.
T Consensus 86 l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LSgGqkqRv~lAraL~~~p~lllLDEPts~LD~~~~~~ 165 (237)
T 2cbz_A 86 ILFGCQLEEPYYRSVIQACALLPDLEILPSGDRTEIGEKGVNLSGGQKQRVSLARAVYSNADIYLFDDPLSAVDAHVGKH 165 (237)
T ss_dssp HHTTSCCCTTHHHHHHHHTTCHHHHTTSTTGGGSEESTTSBCCCHHHHHHHHHHHHHHHCCSEEEEESTTTTSCHHHHHH
T ss_pred hhCccccCHHHHHHHHHHHhhHHHHHhccccccccccCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCcccccCHHHHHH
Confidence 9876544445667788888887777655544321 1 899999999999999999999999999
Q ss_pred HHHHHH---HhcCCceEEEeecCcccccccCEEEEEeCcEEeeecChhHHhcCCCChHHHHHHHH
Q 037346 1090 IQQTLR---QHFSDCTVVTIAHRITSVLDSAMVLLLNHGLIKEYDSPTKLLENKSSSFAQLVAEY 1151 (1156)
Q Consensus 1090 I~~~l~---~~~~~~TvI~IaHrl~ti~~~D~I~Vl~~G~IvE~G~~~eLl~~~~g~f~~l~~~~ 1151 (1156)
+.+.|. +..+++|+|+|||+++.+..||+|++|++|+|++.|+|++++++ .+.|.+++..+
T Consensus 166 i~~~l~~~~~~~~~~tviivtH~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~-~~~~~~~~~~~ 229 (237)
T 2cbz_A 166 IFENVIGPKGMLKNKTRILVTHSMSYLPQVDVIIVMSGGKISEMGSYQELLAR-DGAFAEFLRTY 229 (237)
T ss_dssp HHHHTTSTTSTTTTSEEEEECSCSTTGGGSSEEEEEETTEEEEEECHHHHHHH-TSHHHHHHHHT
T ss_pred HHHHHHHHHhhcCCCEEEEEecChHHHHhCCEEEEEeCCEEEEeCCHHHHhhc-cHHHHHHHHHH
Confidence 999984 34468999999999999988999999999999999999999975 68898888754
|
| >2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J* | Back alignment and structure |
|---|
Probab=100.00 E-value=9.1e-35 Score=319.53 Aligned_cols=196 Identities=23% Similarity=0.371 Sum_probs=166.3
Q ss_pred EEEEEEEEEcCCCCceeeCCCCCCHHHHHHHHhhcccCCCceEEEcCeeCC--CCChHHHhhcCeeeccccccccc-cch
Q 037346 949 NIRHLQVRYAPNLPLVLRGRTGSGKSTLIQTLFRIVESTAGHILIDGKDIS--LIGLHDLRTRLSIIPQDPTMFEG-TTR 1025 (1156)
Q Consensus 949 ~~~~Vsf~Y~~~~~~vL~G~SGsGKSTL~~lL~rl~~p~~G~I~idG~di~--~i~~~~LR~~i~~VpQdp~LF~g-TIr 1025 (1156)
.++||+|..++++.++|.||||||||||+++|+|+++|++|+|.+||.++. ..+...+|++|+||||++.+|.. |++
T Consensus 39 vL~~vsl~i~~Gei~~liG~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~~~i~~v~Q~~~l~~~~tv~ 118 (263)
T 2olj_A 39 VLKGINVHIREGEVVVVIGPSGSGKSTFLRCLNLLEDFDEGEIIIDGINLKAKDTNLNKVREEVGMVFQRFNLFPHMTVL 118 (263)
T ss_dssp EEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEESSSTTCCHHHHHHHEEEECSSCCCCTTSCHH
T ss_pred EEEeeEEEEcCCCEEEEEcCCCCcHHHHHHHHHcCCCCCCcEEEECCEECCCccccHHHHhCcEEEEeCCCcCCCCCCHH
Confidence 455555555566667788999999999999999999999999999999985 34556788999999999999987 999
Q ss_pred hccCCC----CCCC----HHHHHHHHHHcCCChHHHhhcCCcccc-------ccccccCCCEEEEecCCcCCCHHHHHHH
Q 037346 1026 SNLDPL----EEHA----DEQIWEALDKCQLGDEVRKKKGKLDSQ-------GRVLLKKSKVLVLDEATASVDTATDNQI 1090 (1156)
Q Consensus 1026 ~Nl~~~----~~~~----deei~~al~~~~l~~~i~~lp~gl~s~-------ARALLr~~~ILiLDEaTS~LD~~te~~I 1090 (1156)
||+.++ .... ++++.++++.+++.++....|..|..+ ||||+.+|++||||||||+||+.+.+.+
T Consensus 119 e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGqkQRv~lAraL~~~p~lllLDEPts~LD~~~~~~~ 198 (263)
T 2olj_A 119 NNITLAPMKVRKWPREKAEAKAMELLDKVGLKDKAHAYPDSLSGGQAQRVAIARALAMEPKIMLFDEPTSALDPEMVGEV 198 (263)
T ss_dssp HHHHHHHHHTSCCCHHHHHHHHHHHHHHTTCGGGTTSCGGGSCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHH
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCchHhcCChhhCCHHHHHHHHHHHHHHCCCCEEEEeCCcccCCHHHHHHH
Confidence 999652 1222 346889999999988877777766644 8999999999999999999999999999
Q ss_pred HHHHHHhc-CCceEEEeecCccccc-ccCEEEEEeCcEEeeecChhHHhcCCCChH
Q 037346 1091 QQTLRQHF-SDCTVVTIAHRITSVL-DSAMVLLLNHGLIKEYDSPTKLLENKSSSF 1144 (1156)
Q Consensus 1091 ~~~l~~~~-~~~TvI~IaHrl~ti~-~~D~I~Vl~~G~IvE~G~~~eLl~~~~g~f 1144 (1156)
.+.|+++. +++|||+|||+++.+. -||+|++|++|+|++.|+++++++++...+
T Consensus 199 ~~~l~~l~~~g~tvi~vtHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~~~~~~ 254 (263)
T 2olj_A 199 LSVMKQLANEGMTMVVVTHEMGFAREVGDRVLFMDGGYIIEEGKPEDLFDRPQHER 254 (263)
T ss_dssp HHHHHHHHHTTCEEEEECSCHHHHHHHCSEEEEEETTEEEEEECHHHHHHSCCSHH
T ss_pred HHHHHHHHhCCCEEEEEcCCHHHHHHhCCEEEEEECCEEEEECCHHHHHhCcccHH
Confidence 99998864 4789999999999987 499999999999999999999997654433
|
| >4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis} | Back alignment and structure |
|---|
Probab=100.00 E-value=7.7e-35 Score=321.23 Aligned_cols=192 Identities=18% Similarity=0.270 Sum_probs=169.3
Q ss_pred eEEEEEEEEEEcCCCCceeeCCCCCCHHHHHHHHhhcccCCCceEEEcCeeCCCCChHHHhhcCeeecccccc-ccccch
Q 037346 947 EVNIRHLQVRYAPNLPLVLRGRTGSGKSTLIQTLFRIVESTAGHILIDGKDISLIGLHDLRTRLSIIPQDPTM-FEGTTR 1025 (1156)
Q Consensus 947 ~I~~~~Vsf~Y~~~~~~vL~G~SGsGKSTL~~lL~rl~~p~~G~I~idG~di~~i~~~~LR~~i~~VpQdp~L-F~gTIr 1025 (1156)
...++||||+.++++.++|.||||||||||+++|+|+++|++|+|.++|.++...+.+.+|+.+++|+|++.+ |..|++
T Consensus 24 ~~vL~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~ 103 (266)
T 4g1u_C 24 QALINDVSLHIASGEMVAIIGPNGAGKSTLLRLLTGYLSPSHGECHLLGQNLNSWQPKALARTRAVMRQYSELAFPFSVS 103 (266)
T ss_dssp EEEEEEEEEEEETTCEEEEECCTTSCHHHHHHHHTSSSCCSSCEEEETTEETTTSCHHHHHHHEEEECSCCCCCSCCBHH
T ss_pred eeEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEECCcCCHHHHhheEEEEecCCccCCCCCHH
Confidence 3457777777778888889999999999999999999999999999999999999999999999999999976 677999
Q ss_pred hccCCCC-----CCCHHHHHHHHHHcCCChHHHhhcCCcccc-------cccccc------CCCEEEEecCCcCCCHHHH
Q 037346 1026 SNLDPLE-----EHADEQIWEALDKCQLGDEVRKKKGKLDSQ-------GRVLLK------KSKVLVLDEATASVDTATD 1087 (1156)
Q Consensus 1026 ~Nl~~~~-----~~~deei~~al~~~~l~~~i~~lp~gl~s~-------ARALLr------~~~ILiLDEaTS~LD~~te 1087 (1156)
||+.++. ...++++.++++.+++.+.....|..|..+ ||||++ +|++||||||||+||+.+.
T Consensus 104 e~l~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~QRv~iAraL~~~~~~~~~p~lLllDEPts~LD~~~~ 183 (266)
T 4g1u_C 104 EVIQMGRAPYGGSQDRQALQQVMAQTDCLALAQRDYRVLSGGEQQRVQLARVLAQLWQPQPTPRWLFLDEPTSALDLYHQ 183 (266)
T ss_dssp HHHHGGGTTSCSTTHHHHHHHHHHHTTCSTTTTSBGGGCCHHHHHHHHHHHHHHHTCCSSCCCEEEEECCCCSSCCHHHH
T ss_pred HHHHhhhhhcCcHHHHHHHHHHHHHcCChhHhcCCcccCCHHHHHHHHHHHHHhcccccCCCCCEEEEeCccccCCHHHH
Confidence 9996431 223567899999999988777777666544 899999 9999999999999999999
Q ss_pred HHHHHHHHHhcC--CceEEEeecCccccc-ccCEEEEEeCcEEeeecChhHHhc
Q 037346 1088 NQIQQTLRQHFS--DCTVVTIAHRITSVL-DSAMVLLLNHGLIKEYDSPTKLLE 1138 (1156)
Q Consensus 1088 ~~I~~~l~~~~~--~~TvI~IaHrl~ti~-~~D~I~Vl~~G~IvE~G~~~eLl~ 1138 (1156)
..+.+.|+++.+ ++|||+|||+++.+. .||||+||++|+|++.|++++++.
T Consensus 184 ~~i~~~l~~l~~~~~~tvi~vtHdl~~~~~~~d~v~vl~~G~i~~~g~~~~~~~ 237 (266)
T 4g1u_C 184 QHTLRLLRQLTRQEPLAVCCVLHDLNLAALYADRIMLLAQGKLVACGTPEEVLN 237 (266)
T ss_dssp HHHHHHHHHHHHHSSEEEEEECSCHHHHHHHCSEEEEEETTEEEEEECHHHHCC
T ss_pred HHHHHHHHHHHHcCCCEEEEEEcCHHHHHHhCCEEEEEECCEEEEEcCHHHHhC
Confidence 999999988743 469999999999987 599999999999999999999985
|
| >2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-34 Score=313.79 Aligned_cols=187 Identities=19% Similarity=0.325 Sum_probs=160.8
Q ss_pred EEEEEEEEEEcCCCCceeeCCCCCCHHHHHHHHhhcccCCCceEEEcCeeCCCCChHHHhhcCeeeccccccccccchhc
Q 037346 948 VNIRHLQVRYAPNLPLVLRGRTGSGKSTLIQTLFRIVESTAGHILIDGKDISLIGLHDLRTRLSIIPQDPTMFEGTTRSN 1027 (1156)
Q Consensus 948 I~~~~Vsf~Y~~~~~~vL~G~SGsGKSTL~~lL~rl~~p~~G~I~idG~di~~i~~~~LR~~i~~VpQdp~LF~gTIr~N 1027 (1156)
..++||+|+.++++.++|.||||||||||+++|+|+++|++|+|.++| +|+||||+|.+|++|++||
T Consensus 22 ~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g-------------~i~~v~q~~~~~~~tv~en 88 (229)
T 2pze_A 22 PVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSG-------------RISFCSQFSWIMPGTIKEN 88 (229)
T ss_dssp CSEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEECS-------------CEEEECSSCCCCSBCHHHH
T ss_pred eeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCcCCccEEEECC-------------EEEEEecCCcccCCCHHHH
Confidence 357778888778887889999999999999999999999999999998 4999999999999999999
Q ss_pred cCCCCCCCHHHHHHHHHHcCCChHHHhhcCCccc----------c--------ccccccCCCEEEEecCCcCCCHHHHHH
Q 037346 1028 LDPLEEHADEQIWEALDKCQLGDEVRKKKGKLDS----------Q--------GRVLLKKSKVLVLDEATASVDTATDNQ 1089 (1156)
Q Consensus 1028 l~~~~~~~deei~~al~~~~l~~~i~~lp~gl~s----------~--------ARALLr~~~ILiLDEaTS~LD~~te~~ 1089 (1156)
+.++....+....++++.+++.+++..+|.+.++ + ||||+++|++||||||||+||+++.+.
T Consensus 89 l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LSgGqkqrv~lAral~~~p~lllLDEPts~LD~~~~~~ 168 (229)
T 2pze_A 89 IIFGVSYDEYRYRSVIKACQLEEDISKFAEKDNIVLGEGGITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKE 168 (229)
T ss_dssp HHTTSCCCHHHHHHHHHHTTCHHHHTTSTTGGGSCBCTTCTTSCHHHHHHHHHHHHHHSCCSEEEEESTTTTSCHHHHHH
T ss_pred hhccCCcChHHHHHHHHHhCcHHHHHhCcccccccccCCCCcCCHHHHHHHHHHHHHhcCCCEEEEECcccCCCHHHHHH
Confidence 9876544555677888899998888877754431 1 899999999999999999999999999
Q ss_pred HHHH-HHHhcCCceEEEeecCcccccccCEEEEEeCcEEeeecChhHHhcCCCChHHHHH
Q 037346 1090 IQQT-LRQHFSDCTVVTIAHRITSVLDSAMVLLLNHGLIKEYDSPTKLLENKSSSFAQLV 1148 (1156)
Q Consensus 1090 I~~~-l~~~~~~~TvI~IaHrl~ti~~~D~I~Vl~~G~IvE~G~~~eLl~~~~g~f~~l~ 1148 (1156)
+.+. +++..+++|||+|||+++.+..||+|++|++|++++.|++++++++ .+.|.+++
T Consensus 169 i~~~l~~~~~~~~tvi~vtH~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~-~~~~~~~~ 227 (229)
T 2pze_A 169 IFESCVCKLMANKTRILVTSKMEHLKKADKILILHEGSSYFYGTFSELQNL-QPDFSSKL 227 (229)
T ss_dssp HHHHCCCCCTTTSEEEEECCCHHHHHHCSEEEEEETTEEEEEECHHHHHTC---CHHHHH
T ss_pred HHHHHHHHhhCCCEEEEEcCChHHHHhCCEEEEEECCEEEEECCHHHHHhc-ChHHHHHh
Confidence 9997 4555568999999999999888999999999999999999999864 45566554
|
| >3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.8e-34 Score=327.89 Aligned_cols=201 Identities=21% Similarity=0.309 Sum_probs=172.1
Q ss_pred eEEEEEEEEEEcCCCCceeeCCCCCCHHHHHHHHhhcccCCCceEEEcCeeCCC--CChHHHhhcCeeeccccccccc-c
Q 037346 947 EVNIRHLQVRYAPNLPLVLRGRTGSGKSTLIQTLFRIVESTAGHILIDGKDISL--IGLHDLRTRLSIIPQDPTMFEG-T 1023 (1156)
Q Consensus 947 ~I~~~~Vsf~Y~~~~~~vL~G~SGsGKSTL~~lL~rl~~p~~G~I~idG~di~~--i~~~~LR~~i~~VpQdp~LF~g-T 1023 (1156)
...++||||..++++-++|.||||||||||+++|+|+.+|++|+|.+||.|+.+ ......|++||+|+|++.||.. |
T Consensus 17 ~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~~G~I~i~G~~i~~~~~~~~~~~r~ig~vfQ~~~l~p~lt 96 (359)
T 3fvq_A 17 TPVLNDISLSLDPGEILFIIGASGCGKTTLLRCLAGFEQPDSGEISLSGKTIFSKNTNLPVRERRLGYLVQEGVLFPHLT 96 (359)
T ss_dssp EEEEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTSSCCSEEEEEETTEEEESSSCBCCGGGSCCEEECTTCCCCTTSC
T ss_pred EEEEEeeEEEEcCCCEEEEECCCCchHHHHHHHHhcCCCCCCcEEEECCEECcccccccchhhCCEEEEeCCCcCCCCCC
Confidence 346788888888888888999999999999999999999999999999999933 2334457889999999999965 9
Q ss_pred chhccCCCCC----CC---HHHHHHHHHHcCCChHHHhhcCCcccc-------ccccccCCCEEEEecCCcCCCHHHHHH
Q 037346 1024 TRSNLDPLEE----HA---DEQIWEALDKCQLGDEVRKKKGKLDSQ-------GRVLLKKSKVLVLDEATASVDTATDNQ 1089 (1156)
Q Consensus 1024 Ir~Nl~~~~~----~~---deei~~al~~~~l~~~i~~lp~gl~s~-------ARALLr~~~ILiLDEaTS~LD~~te~~ 1089 (1156)
++||+.++-. .. ++++.++++.++|.++....|..|..+ ||||+.+|+|||||||||+||+.+...
T Consensus 97 V~eni~~~l~~~~~~~~~~~~~v~~~l~~~gL~~~~~r~~~~LSGGq~QRValArAL~~~P~lLLLDEPts~LD~~~r~~ 176 (359)
T 3fvq_A 97 VYRNIAYGLGNGKGRTAQERQRIEAMLELTGISELAGRYPHELSGGQQQRAALARALAPDPELILLDEPFSALDEQLRRQ 176 (359)
T ss_dssp HHHHHHTTSTTSSCCSHHHHHHHHHHHHHHTCGGGTTSCGGGSCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHH
T ss_pred HHHHHHHHHHHcCCChHHHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHH
Confidence 9999976421 11 356889999999999888888877655 899999999999999999999999999
Q ss_pred HHHHHHHhc--CCceEEEeecCcccccc-cCEEEEEeCcEEeeecChhHHhcCCCChHHHH
Q 037346 1090 IQQTLRQHF--SDCTVVTIAHRITSVLD-SAMVLLLNHGLIKEYDSPTKLLENKSSSFAQL 1147 (1156)
Q Consensus 1090 I~~~l~~~~--~~~TvI~IaHrl~ti~~-~D~I~Vl~~G~IvE~G~~~eLl~~~~g~f~~l 1147 (1156)
+++.|.+.. .+.|+|+|||+++.+.. ||||+||++|+|++.|+|++++.++...|...
T Consensus 177 l~~~l~~~~~~~g~tvi~vTHd~~ea~~~aDri~vl~~G~i~~~g~~~el~~~p~~~~~a~ 237 (359)
T 3fvq_A 177 IREDMIAALRANGKSAVFVSHDREEALQYADRIAVMKQGRILQTASPHELYRQPADLDAAL 237 (359)
T ss_dssp HHHHHHHHHHHTTCEEEEECCCHHHHHHHCSEEEEEETTEEEEEECHHHHHHSCSCHHHHH
T ss_pred HHHHHHHHHHhCCCEEEEEeCCHHHHHHHCCEEEEEECCEEEEEeCHHHHHhCcccHHHHH
Confidence 988776543 48999999999988764 99999999999999999999998877666544
|
| >2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=100.00 E-value=8.8e-35 Score=315.77 Aligned_cols=188 Identities=23% Similarity=0.358 Sum_probs=166.8
Q ss_pred EEEEEEEEcCCCCceeeCCCCCCHHHHHHHHhhcccCCCceEEEcCeeCCCCChHHHhhcCeeeccccccccc-cchhcc
Q 037346 950 IRHLQVRYAPNLPLVLRGRTGSGKSTLIQTLFRIVESTAGHILIDGKDISLIGLHDLRTRLSIIPQDPTMFEG-TTRSNL 1028 (1156)
Q Consensus 950 ~~~Vsf~Y~~~~~~vL~G~SGsGKSTL~~lL~rl~~p~~G~I~idG~di~~i~~~~LR~~i~~VpQdp~LF~g-TIr~Nl 1028 (1156)
++||||..++ +.++|.||||||||||+++|+|+++|++|+|.+||.++.+.+ ..|++|++|||++.+|.. |++||+
T Consensus 15 l~~isl~i~~-e~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~--~~~~~i~~v~q~~~l~~~ltv~enl 91 (240)
T 2onk_A 15 RLNVDFEMGR-DYCVLLGPTGAGKSVFLELIAGIVKPDRGEVRLNGADITPLP--PERRGIGFVPQDYALFPHLSVYRNI 91 (240)
T ss_dssp EEEEEEEECS-SEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSC--TTTSCCBCCCSSCCCCTTSCHHHHH
T ss_pred EeeeEEEECC-EEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCc--hhhCcEEEEcCCCccCCCCcHHHHH
Confidence 8999999998 888999999999999999999999999999999999997643 457889999999999987 999999
Q ss_pred CCCCCC-----CHHHHHHHHHHcCCChHHHhhcCCcccc-------ccccccCCCEEEEecCCcCCCHHHHHHHHHHHHH
Q 037346 1029 DPLEEH-----ADEQIWEALDKCQLGDEVRKKKGKLDSQ-------GRVLLKKSKVLVLDEATASVDTATDNQIQQTLRQ 1096 (1156)
Q Consensus 1029 ~~~~~~-----~deei~~al~~~~l~~~i~~lp~gl~s~-------ARALLr~~~ILiLDEaTS~LD~~te~~I~~~l~~ 1096 (1156)
.+.... .++++.++++.+++.++....|..|..+ ||||+++|++||||||||+||+.+.+.+.+.|++
T Consensus 92 ~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~~p~lllLDEPts~LD~~~~~~~~~~l~~ 171 (240)
T 2onk_A 92 AYGLRNVERVERDRRVREMAEKLGIAHLLDRKPARLSGGERQRVALARALVIQPRLLLLDEPLSAVDLKTKGVLMEELRF 171 (240)
T ss_dssp HTTCTTSCHHHHHHHHHHHHHTTTCTTTTTCCGGGSCHHHHHHHHHHHHHTTCCSSBEEESTTSSCCHHHHHHHHHHHHH
T ss_pred HHHHHHcCCchHHHHHHHHHHHcCCHHHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHH
Confidence 764321 1456889999999988877777777654 8999999999999999999999999999999988
Q ss_pred hcC--CceEEEeecCccccc-ccCEEEEEeCcEEeeecChhHHhcCC
Q 037346 1097 HFS--DCTVVTIAHRITSVL-DSAMVLLLNHGLIKEYDSPTKLLENK 1140 (1156)
Q Consensus 1097 ~~~--~~TvI~IaHrl~ti~-~~D~I~Vl~~G~IvE~G~~~eLl~~~ 1140 (1156)
+.+ ++|||+|||+++.+. .||+|++|++|++++.|+++++++++
T Consensus 172 l~~~~g~tvi~vtHd~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~~ 218 (240)
T 2onk_A 172 VQREFDVPILHVTHDLIEAAMLADEVAVMLNGRIVEKGKLKELFSAK 218 (240)
T ss_dssp HHHHHTCCEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHHHSC
T ss_pred HHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHHHhCc
Confidence 743 799999999999875 59999999999999999999998765
|
| >1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=100.00 E-value=2.1e-34 Score=315.66 Aligned_cols=189 Identities=19% Similarity=0.357 Sum_probs=164.1
Q ss_pred EEEEEEEEEcCCCCceeeCCCCCCHHHHHHHHhhcccCCCceEEEcCeeCCCCChHHHhhcCeeeccccccccc-cchhc
Q 037346 949 NIRHLQVRYAPNLPLVLRGRTGSGKSTLIQTLFRIVESTAGHILIDGKDISLIGLHDLRTRLSIIPQDPTMFEG-TTRSN 1027 (1156)
Q Consensus 949 ~~~~Vsf~Y~~~~~~vL~G~SGsGKSTL~~lL~rl~~p~~G~I~idG~di~~i~~~~LR~~i~~VpQdp~LF~g-TIr~N 1027 (1156)
.++||+|..++++.++|.||||||||||+++|+|+++|++|+|.++|.++.. ....+|++|+||||+|.+|.+ |++||
T Consensus 30 vl~~vsl~i~~Gei~~l~G~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~~~~-~~~~~~~~i~~v~q~~~l~~~ltv~en 108 (256)
T 1vpl_A 30 ILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPSSGIVTVFGKNVVE-EPHEVRKLISYLPEEAGAYRNMQGIEY 108 (256)
T ss_dssp EEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEETTT-CHHHHHTTEEEECTTCCCCTTSBHHHH
T ss_pred EEEeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCc-cHHHHhhcEEEEcCCCCCCCCCcHHHH
Confidence 4555555555667677889999999999999999999999999999999987 556788999999999999887 99999
Q ss_pred cCCCC---CCC----HHHHHHHHHHcCCChHHHhhcCCcccc-------ccccccCCCEEEEecCCcCCCHHHHHHHHHH
Q 037346 1028 LDPLE---EHA----DEQIWEALDKCQLGDEVRKKKGKLDSQ-------GRVLLKKSKVLVLDEATASVDTATDNQIQQT 1093 (1156)
Q Consensus 1028 l~~~~---~~~----deei~~al~~~~l~~~i~~lp~gl~s~-------ARALLr~~~ILiLDEaTS~LD~~te~~I~~~ 1093 (1156)
+.++. ... ++++.++++.+++.++....|..|..+ ||||+++|+|||||||||+||+.+...+.+.
T Consensus 109 l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGq~qRv~lAraL~~~p~lllLDEPts~LD~~~~~~l~~~ 188 (256)
T 1vpl_A 109 LRFVAGFYASSSSEIEEMVERATEIAGLGEKIKDRVSTYSKGMVRKLLIARALMVNPRLAILDEPTSGLDVLNAREVRKI 188 (256)
T ss_dssp HHHHHHHHCCCHHHHHHHHHHHHHHHCCGGGGGSBGGGCCHHHHHHHHHHHHHTTCCSEEEEESTTTTCCHHHHHHHHHH
T ss_pred HHHHHHHcCCChHHHHHHHHHHHHHCCCchHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCccccCHHHHHHHHHH
Confidence 96521 122 246889999999998887777766654 8999999999999999999999999999999
Q ss_pred HHHhc-CCceEEEeecCcccccc-cCEEEEEeCcEEeeecChhHHhc
Q 037346 1094 LRQHF-SDCTVVTIAHRITSVLD-SAMVLLLNHGLIKEYDSPTKLLE 1138 (1156)
Q Consensus 1094 l~~~~-~~~TvI~IaHrl~ti~~-~D~I~Vl~~G~IvE~G~~~eLl~ 1138 (1156)
|+++. +++|||+|||+++.+.. ||+|++|++|++++.|+++++.+
T Consensus 189 l~~l~~~g~tiiivtHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~ 235 (256)
T 1vpl_A 189 LKQASQEGLTILVSSHNMLEVEFLCDRIALIHNGTIVETGTVEELKE 235 (256)
T ss_dssp HHHHHHTTCEEEEEECCHHHHTTTCSEEEEEETTEEEEEEEHHHHHH
T ss_pred HHHHHhCCCEEEEEcCCHHHHHHHCCEEEEEECCEEEEecCHHHHHH
Confidence 98874 47899999999999876 99999999999999999999975
|
| >1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=100.00 E-value=2.7e-34 Score=316.66 Aligned_cols=197 Identities=23% Similarity=0.341 Sum_probs=169.4
Q ss_pred EEEEEEEEEEcCCCCceeeCCCCCCHHHHHHHHhhcccCCCceEEEcCeeCCC----------CCh---HHHhhcCeeec
Q 037346 948 VNIRHLQVRYAPNLPLVLRGRTGSGKSTLIQTLFRIVESTAGHILIDGKDISL----------IGL---HDLRTRLSIIP 1014 (1156)
Q Consensus 948 I~~~~Vsf~Y~~~~~~vL~G~SGsGKSTL~~lL~rl~~p~~G~I~idG~di~~----------i~~---~~LR~~i~~Vp 1014 (1156)
..++||||..++++.++|.||||||||||+++|+|+++|++|+|.++|.++.. ++. ..+|+++++||
T Consensus 20 ~vl~~vsl~i~~Ge~~~liG~nGsGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~ 99 (262)
T 1b0u_A 20 EVLKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEKPSEGAIIVNGQNINLVRDKDGQLKVADKNQLRLLRTRLTMVF 99 (262)
T ss_dssp EEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEECCEEECTTSSEEESCHHHHHHHHHHEEEEC
T ss_pred EEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEccccccccccccccChhhHHHHhcceEEEe
Confidence 46788888888888888999999999999999999999999999999999862 443 35688999999
Q ss_pred cccccccc-cchhccCCC----CCCC----HHHHHHHHHHcCCChH-HHhhcCCcccc-------ccccccCCCEEEEec
Q 037346 1015 QDPTMFEG-TTRSNLDPL----EEHA----DEQIWEALDKCQLGDE-VRKKKGKLDSQ-------GRVLLKKSKVLVLDE 1077 (1156)
Q Consensus 1015 Qdp~LF~g-TIr~Nl~~~----~~~~----deei~~al~~~~l~~~-i~~lp~gl~s~-------ARALLr~~~ILiLDE 1077 (1156)
|++.+|.. |+++|+.++ .... ++++.++++.+++.++ ....|..|..+ ||||+.+|+||||||
T Consensus 100 Q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~LSgGq~qRv~lAraL~~~p~lllLDE 179 (262)
T 1b0u_A 100 QHFNLWSHMTVLENVMEAPIQVLGLSKHDARERALKYLAKVGIDERAQGKYPVHLSGGQQQRVSIARALAMEPDVLLFDE 179 (262)
T ss_dssp SSCCCCTTSCHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTCCHHHHTSCGGGSCHHHHHHHHHHHHHHTCCSEEEEES
T ss_pred cCcccCCCCcHHHHHHhhHHHhcCCCHHHHHHHHHHHHHHcCCCchhhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEeC
Confidence 99999877 999999652 1122 3468899999999998 77777777654 899999999999999
Q ss_pred CCcCCCHHHHHHHHHHHHHhc-CCceEEEeecCccccc-ccCEEEEEeCcEEeeecChhHHhcCCCChH
Q 037346 1078 ATASVDTATDNQIQQTLRQHF-SDCTVVTIAHRITSVL-DSAMVLLLNHGLIKEYDSPTKLLENKSSSF 1144 (1156)
Q Consensus 1078 aTS~LD~~te~~I~~~l~~~~-~~~TvI~IaHrl~ti~-~~D~I~Vl~~G~IvE~G~~~eLl~~~~g~f 1144 (1156)
|||+||+.+.+.+.+.|+++. +++|||+|||+++.+. -||+|++|++|+|++.|+++++++++...+
T Consensus 180 Pts~LD~~~~~~~~~~l~~l~~~g~tvi~vtHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~~~~~~ 248 (262)
T 1b0u_A 180 PTSALDPELVGEVLRIMQQLAEEGKTMVVVTHEMGFARHVSSHVIFLHQGKIEEEGDPEQVFGNPQSPR 248 (262)
T ss_dssp TTTTSCHHHHHHHHHHHHHHHHTTCCEEEECSCHHHHHHHCSEEEEEETTEEEEEECHHHHHHSCCSHH
T ss_pred CCccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHHhCcchHH
Confidence 999999999999999998864 4789999999999986 599999999999999999999987654433
|
| >1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-34 Score=315.11 Aligned_cols=191 Identities=19% Similarity=0.351 Sum_probs=164.3
Q ss_pred EEEEEEEEEEcCCCCceeeCCCCCCHHHHHHHHhhcccCCCceEEEcCeeCCCCChHHH-hhcCeeeccccccccc-cch
Q 037346 948 VNIRHLQVRYAPNLPLVLRGRTGSGKSTLIQTLFRIVESTAGHILIDGKDISLIGLHDL-RTRLSIIPQDPTMFEG-TTR 1025 (1156)
Q Consensus 948 I~~~~Vsf~Y~~~~~~vL~G~SGsGKSTL~~lL~rl~~p~~G~I~idG~di~~i~~~~L-R~~i~~VpQdp~LF~g-TIr 1025 (1156)
..++||||..++++.++|.||||||||||+++|+|+++|++|+|.++|.++.+.+...+ |++++||||+|.+|.+ |++
T Consensus 20 ~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~l~~~ltv~ 99 (240)
T 1ji0_A 20 HAIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQKGKIIFNGQDITNKPAHVINRMGIALVPEGRRIFPELTVY 99 (240)
T ss_dssp EEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHTTEEEECSSCCCCTTSBHH
T ss_pred eEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCCHHHHHhCCEEEEecCCccCCCCcHH
Confidence 45778888878888888999999999999999999999999999999999998887665 4559999999999987 999
Q ss_pred hccCCCC----CCC--HHHHHHHHHHcC-CChHHHhhcCCcccc-------ccccccCCCEEEEecCCcCCCHHHHHHHH
Q 037346 1026 SNLDPLE----EHA--DEQIWEALDKCQ-LGDEVRKKKGKLDSQ-------GRVLLKKSKVLVLDEATASVDTATDNQIQ 1091 (1156)
Q Consensus 1026 ~Nl~~~~----~~~--deei~~al~~~~-l~~~i~~lp~gl~s~-------ARALLr~~~ILiLDEaTS~LD~~te~~I~ 1091 (1156)
||+.++. ... ++.+.++++..+ +.+.....|..|..+ ||||+++|+|||||||||+||+.+.+.+.
T Consensus 100 enl~~~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~LSgGq~qrv~lAraL~~~p~lllLDEPts~LD~~~~~~l~ 179 (240)
T 1ji0_A 100 ENLMMGAYNRKDKEGIKRDLEWIFSLFPRLKERLKQLGGTLSGGEQQMLAIGRALMSRPKLLMMDEPSLGLAPILVSEVF 179 (240)
T ss_dssp HHHHGGGTTCCCSSHHHHHHHHHHHHCHHHHTTTTSBSSSSCHHHHHHHHHHHHHTTCCSEEEEECTTTTCCHHHHHHHH
T ss_pred HHHHHhhhcCCCHHHHHHHHHHHHHHcccHhhHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEcCCcccCCHHHHHHHH
Confidence 9996532 111 345677888884 877766666666644 89999999999999999999999999999
Q ss_pred HHHHHhc-CCceEEEeecCccccc-ccCEEEEEeCcEEeeecChhHHhc
Q 037346 1092 QTLRQHF-SDCTVVTIAHRITSVL-DSAMVLLLNHGLIKEYDSPTKLLE 1138 (1156)
Q Consensus 1092 ~~l~~~~-~~~TvI~IaHrl~ti~-~~D~I~Vl~~G~IvE~G~~~eLl~ 1138 (1156)
+.|+++. +++|||+|||+++.+. .||+|++|++|++++.|+++++++
T Consensus 180 ~~l~~~~~~g~tvi~vtHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~ 228 (240)
T 1ji0_A 180 EVIQKINQEGTTILLVEQNALGALKVAHYGYVLETGQIVLEGKASELLD 228 (240)
T ss_dssp HHHHHHHHTTCCEEEEESCHHHHHHHCSEEEEEETTEEEEEEEHHHHHT
T ss_pred HHHHHHHHCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEEcCHHHHhc
Confidence 9998875 5899999999998764 599999999999999999999985
|
| >3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.7e-34 Score=330.07 Aligned_cols=198 Identities=18% Similarity=0.309 Sum_probs=174.3
Q ss_pred eEEEEEEEEEEcCCCCceeeCCCCCCHHHHHHHHhhcccCCCceEEEcCeeCCCCChHHHhhcCeeeccccccccc-cch
Q 037346 947 EVNIRHLQVRYAPNLPLVLRGRTGSGKSTLIQTLFRIVESTAGHILIDGKDISLIGLHDLRTRLSIIPQDPTMFEG-TTR 1025 (1156)
Q Consensus 947 ~I~~~~Vsf~Y~~~~~~vL~G~SGsGKSTL~~lL~rl~~p~~G~I~idG~di~~i~~~~LR~~i~~VpQdp~LF~g-TIr 1025 (1156)
...++||||..++++-++|.||||||||||+++|+|+++|++|+|.+||.++...+.. ++.|++|+|++.||.. |++
T Consensus 16 ~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~~G~I~i~G~~~~~~~~~--~r~ig~VfQ~~~l~p~ltV~ 93 (381)
T 3rlf_A 16 VVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETITSGDLFIGEKRMNDTPPA--ERGVGMVFQSYALYPHLSVA 93 (381)
T ss_dssp EEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTCCGG--GSCEEEECTTCCCCTTSCHH
T ss_pred EEEEeeeEEEECCCCEEEEEcCCCchHHHHHHHHHcCCCCCCeEEEECCEECCCCCHH--HCCEEEEecCCcCCCCCCHH
Confidence 3467888888888888889999999999999999999999999999999999988876 4679999999999976 999
Q ss_pred hccCCC---CCCC----HHHHHHHHHHcCCChHHHhhcCCcccc-------ccccccCCCEEEEecCCcCCCHHHHHHHH
Q 037346 1026 SNLDPL---EEHA----DEQIWEALDKCQLGDEVRKKKGKLDSQ-------GRVLLKKSKVLVLDEATASVDTATDNQIQ 1091 (1156)
Q Consensus 1026 ~Nl~~~---~~~~----deei~~al~~~~l~~~i~~lp~gl~s~-------ARALLr~~~ILiLDEaTS~LD~~te~~I~ 1091 (1156)
|||.++ ...+ ++++.++++.+++.++....|..|..+ ||||+++|+|||||||||+||+.+...+.
T Consensus 94 eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~p~~LSGGqrQRVaiArAL~~~P~lLLLDEPts~LD~~~~~~l~ 173 (381)
T 3rlf_A 94 ENMSFGLKLAGAKKEVINQRVNQVAEVLQLAHLLDRKPKALSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAALRVQMR 173 (381)
T ss_dssp HHHTHHHHHTTCCHHHHHHHHHHHHHHTTCGGGTTCCGGGSCHHHHHHHHHHHHHHHCCSEEEEESTTTTSCHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhcCChhHCCHHHHHHHHHHHHHHcCCCEEEEECCCcCCCHHHHHHHH
Confidence 999753 1122 356889999999999888888877655 89999999999999999999999999999
Q ss_pred HHHHHhcC--CceEEEeecCcccccc-cCEEEEEeCcEEeeecChhHHhcCCCChHHH
Q 037346 1092 QTLRQHFS--DCTVVTIAHRITSVLD-SAMVLLLNHGLIKEYDSPTKLLENKSSSFAQ 1146 (1156)
Q Consensus 1092 ~~l~~~~~--~~TvI~IaHrl~ti~~-~D~I~Vl~~G~IvE~G~~~eLl~~~~g~f~~ 1146 (1156)
+.|+++.+ +.|+|+|||+++.+.. ||||+||++|+|++.|+|++++.++...|..
T Consensus 174 ~~l~~l~~~~g~tii~vTHd~~ea~~~aDri~vl~~G~i~~~g~~~~l~~~p~~~~v~ 231 (381)
T 3rlf_A 174 IEISRLHKRLGRTMIYVTHDQVEAMTLADKIVVLDAGRVAQVGKPLELYHYPADRFVA 231 (381)
T ss_dssp HHHHHHHHHHCCEEEEECSCHHHHHHHCSEEEEEETTEEEEEECHHHHHHCCSBHHHH
T ss_pred HHHHHHHHhCCCEEEEEECCHHHHHHhCCEEEEEECCEEEEEeCHHHHHhCCccHHHH
Confidence 99988743 8999999999988764 9999999999999999999999887766654
|
| >2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.8e-34 Score=317.48 Aligned_cols=191 Identities=22% Similarity=0.308 Sum_probs=169.5
Q ss_pred eEEEEEEEEEEcCCCCceeeCCCCCCHHHHHHHHhhcccCCCceEEEcCeeCCCCChHHHhhcCeeecccc--ccccccc
Q 037346 947 EVNIRHLQVRYAPNLPLVLRGRTGSGKSTLIQTLFRIVESTAGHILIDGKDISLIGLHDLRTRLSIIPQDP--TMFEGTT 1024 (1156)
Q Consensus 947 ~I~~~~Vsf~Y~~~~~~vL~G~SGsGKSTL~~lL~rl~~p~~G~I~idG~di~~i~~~~LR~~i~~VpQdp--~LF~gTI 1024 (1156)
...++||||+.++++.++|.||||||||||+++|+|+++|++|+|.+||.++.+. .+|++|++|||+| .++..|+
T Consensus 20 ~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLl~~i~Gl~~p~~G~I~~~g~~~~~~---~~~~~i~~v~q~~~~~~~~~tv 96 (266)
T 2yz2_A 20 KKALENVSLVINEGECLLVAGNTGSGKSTLLQIVAGLIEPTSGDVLYDGERKKGY---EIRRNIGIAFQYPEDQFFAERV 96 (266)
T ss_dssp EEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECCHH---HHGGGEEEECSSGGGGCCCSSH
T ss_pred cceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEECCEECchH---HhhhhEEEEeccchhhcCCCcH
Confidence 3478999999999998899999999999999999999999999999999998753 6788999999997 5678899
Q ss_pred hhccCCCC------CCCHHHHHHHHHHcCCC--hHHHhhcCCcccc-------ccccccCCCEEEEecCCcCCCHHHHHH
Q 037346 1025 RSNLDPLE------EHADEQIWEALDKCQLG--DEVRKKKGKLDSQ-------GRVLLKKSKVLVLDEATASVDTATDNQ 1089 (1156)
Q Consensus 1025 r~Nl~~~~------~~~deei~~al~~~~l~--~~i~~lp~gl~s~-------ARALLr~~~ILiLDEaTS~LD~~te~~ 1089 (1156)
+||+.++. ...++++.++++.+++. ++....|..|..+ ||||+++|+|||||||||+||+.+.+.
T Consensus 97 ~enl~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~LSgGq~qRv~lAraL~~~p~lllLDEPts~LD~~~~~~ 176 (266)
T 2yz2_A 97 FDEVAFAVKNFYPDRDPVPLVKKAMEFVGLDFDSFKDRVPFFLSGGEKRRVAIASVIVHEPDILILDEPLVGLDREGKTD 176 (266)
T ss_dssp HHHHHHTTTTTCTTSCSHHHHHHHHHHTTCCHHHHTTCCGGGSCHHHHHHHHHHHHHTTCCSEEEEESTTTTCCHHHHHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHcCcCCcccccCChhhCCHHHHHHHHHHHHHHcCCCEEEEcCccccCCHHHHHH
Confidence 99996431 12256789999999999 8888878777655 899999999999999999999999999
Q ss_pred HHHHHHHhc-CCceEEEeecCcccccc-cCEEEEEeCcEEeeecChhHHhcCC
Q 037346 1090 IQQTLRQHF-SDCTVVTIAHRITSVLD-SAMVLLLNHGLIKEYDSPTKLLENK 1140 (1156)
Q Consensus 1090 I~~~l~~~~-~~~TvI~IaHrl~ti~~-~D~I~Vl~~G~IvE~G~~~eLl~~~ 1140 (1156)
+.+.|+++. +++|||+|||+++.+.. ||+|++|++|++++.|+++++++++
T Consensus 177 l~~~l~~l~~~g~tii~vtHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~~ 229 (266)
T 2yz2_A 177 LLRIVEKWKTLGKTVILISHDIETVINHVDRVVVLEKGKKVFDGTRMEFLEKY 229 (266)
T ss_dssp HHHHHHHHHHTTCEEEEECSCCTTTGGGCSEEEEEETTEEEEEEEHHHHHHHS
T ss_pred HHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHhcCc
Confidence 999998874 48899999999999876 9999999999999999999998643
|
| >2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C | Back alignment and structure |
|---|
Probab=100.00 E-value=1.9e-34 Score=314.61 Aligned_cols=189 Identities=20% Similarity=0.254 Sum_probs=171.5
Q ss_pred EEEEEEEEEcCCCCceeeCCCCCCHHHHHHHHhhcccCCCceEEEcCeeCCCCChHHHhhcCeeeccccccccc-cchhc
Q 037346 949 NIRHLQVRYAPNLPLVLRGRTGSGKSTLIQTLFRIVESTAGHILIDGKDISLIGLHDLRTRLSIIPQDPTMFEG-TTRSN 1027 (1156)
Q Consensus 949 ~~~~Vsf~Y~~~~~~vL~G~SGsGKSTL~~lL~rl~~p~~G~I~idG~di~~i~~~~LR~~i~~VpQdp~LF~g-TIr~N 1027 (1156)
.++||||..++++.++|.||||||||||+++|+|+++|+ |+|.++|.++.+.+...+|++++||||++.+|.+ |++||
T Consensus 15 vl~~vsl~i~~Ge~~~liG~NGsGKSTLlk~l~Gl~~p~-G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~ 93 (249)
T 2qi9_C 15 RLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMTSGK-GSIQFAGQPLEAWSATKLALHRAYLSQQQTPPFATPVWHY 93 (249)
T ss_dssp TEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCE-EEEEETTEEGGGSCHHHHHHHEEEECSCCCCCTTCBHHHH
T ss_pred EEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCC-eEEEECCEECCcCCHHHHhceEEEECCCCccCCCCcHHHH
Confidence 489999999999999999999999999999999999999 9999999999988889999999999999998875 99999
Q ss_pred cCCCCC--CCHHHHHHHHHHcCCChHHHhhcCCcccc-------ccccccCCC-------EEEEecCCcCCCHHHHHHHH
Q 037346 1028 LDPLEE--HADEQIWEALDKCQLGDEVRKKKGKLDSQ-------GRVLLKKSK-------VLVLDEATASVDTATDNQIQ 1091 (1156)
Q Consensus 1028 l~~~~~--~~deei~~al~~~~l~~~i~~lp~gl~s~-------ARALLr~~~-------ILiLDEaTS~LD~~te~~I~ 1091 (1156)
+.++.. ..++++.++++.+++.++....|..|..+ ||||+++|+ +||||||||+||+.+.+.+.
T Consensus 94 l~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~lAraL~~~p~~~~~~~~lllLDEPts~LD~~~~~~l~ 173 (249)
T 2qi9_C 94 LTLHQHDKTRTELLNDVAGALALDDKLGRSTNQLSGGEWQRVRLAAVVLQITPQANPAGQLLLLDEPMNSLDVAQQSALD 173 (249)
T ss_dssp HHTTCSSTTCHHHHHHHHHHTTCGGGTTSBGGGCCHHHHHHHHHHHHHHHHCTTTCTTCCEEEESSTTTTCCHHHHHHHH
T ss_pred HHHhhccCCcHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHHcCCCcCCCCCeEEEEECCcccCCHHHHHHHH
Confidence 976431 23778999999999998887777666654 899999999 99999999999999999999
Q ss_pred HHHHHhc-CCceEEEeecCcccc-cccCEEEEEeCcEEeeecChhHHhc
Q 037346 1092 QTLRQHF-SDCTVVTIAHRITSV-LDSAMVLLLNHGLIKEYDSPTKLLE 1138 (1156)
Q Consensus 1092 ~~l~~~~-~~~TvI~IaHrl~ti-~~~D~I~Vl~~G~IvE~G~~~eLl~ 1138 (1156)
+.|+++. +++|||+|||+++.+ ..||+|++|++|++++.|+++++++
T Consensus 174 ~~l~~l~~~g~tviivtHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~ 222 (249)
T 2qi9_C 174 KILSALSQQGLAIVMSSHDLNHTLRHAHRAWLLKGGKMLASGRREEVLT 222 (249)
T ss_dssp HHHHHHHHTTCEEEEECSCHHHHHHHCSEEEEEETTEEEEEEEHHHHSC
T ss_pred HHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHhc
Confidence 9998874 488999999999998 5699999999999999999999975
|
| >2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=100.00 E-value=6.6e-34 Score=324.55 Aligned_cols=196 Identities=19% Similarity=0.304 Sum_probs=172.4
Q ss_pred EEEEEEEEEEcCCCCceeeCCCCCCHHHHHHHHhhcccCCCceEEEcCeeCCCCChHHHhhcCeeeccccccccc-cchh
Q 037346 948 VNIRHLQVRYAPNLPLVLRGRTGSGKSTLIQTLFRIVESTAGHILIDGKDISLIGLHDLRTRLSIIPQDPTMFEG-TTRS 1026 (1156)
Q Consensus 948 I~~~~Vsf~Y~~~~~~vL~G~SGsGKSTL~~lL~rl~~p~~G~I~idG~di~~i~~~~LR~~i~~VpQdp~LF~g-TIr~ 1026 (1156)
..++||+|..++++.++|.||||||||||+++|+|+++|++|+|.+||.++.+++.. +++|++|||++.+|.. |+++
T Consensus 17 ~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~--~r~ig~v~Q~~~l~~~ltv~e 94 (359)
T 2yyz_A 17 KAVDGVSFEVKDGEFVALLGPSGCGKTTTLLMLAGIYKPTSGEIYFDDVLVNDIPPK--YREVGMVFQNYALYPHMTVFE 94 (359)
T ss_dssp EEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCGG--GTTEEEECSSCCCCTTSCHHH
T ss_pred EEEeeeEEEEcCCCEEEEEcCCCchHHHHHHHHHCCCCCCccEEEECCEECCCCChh--hCcEEEEecCcccCCCCCHHH
Confidence 467888888888888889999999999999999999999999999999999887754 6789999999999976 9999
Q ss_pred ccCCCCC---CC----HHHHHHHHHHcCCChHHHhhcCCcccc-------ccccccCCCEEEEecCCcCCCHHHHHHHHH
Q 037346 1027 NLDPLEE---HA----DEQIWEALDKCQLGDEVRKKKGKLDSQ-------GRVLLKKSKVLVLDEATASVDTATDNQIQQ 1092 (1156)
Q Consensus 1027 Nl~~~~~---~~----deei~~al~~~~l~~~i~~lp~gl~s~-------ARALLr~~~ILiLDEaTS~LD~~te~~I~~ 1092 (1156)
|+.++.. .. ++++.++++.+++.++....|..|..+ ||||+++|++||||||||+||+.+.+.+.+
T Consensus 95 ni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~~~~LSgGq~QRvalArAL~~~P~lLLLDEP~s~LD~~~r~~l~~ 174 (359)
T 2yyz_A 95 NIAFPLRARRISKDEVEKRVVEIARKLLIDNLLDRKPTQLSGGQQQRVALARALVKQPKVLLFDEPLSNLDANLRMIMRA 174 (359)
T ss_dssp HHHGGGSSSCSHHHHTTHHHHHHHHHTTCGGGTTSCGGGSCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHH
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHH
Confidence 9976321 11 356889999999999888888777655 899999999999999999999999999999
Q ss_pred HHHHhcC--CceEEEeecCccccc-ccCEEEEEeCcEEeeecChhHHhcCCCChHH
Q 037346 1093 TLRQHFS--DCTVVTIAHRITSVL-DSAMVLLLNHGLIKEYDSPTKLLENKSSSFA 1145 (1156)
Q Consensus 1093 ~l~~~~~--~~TvI~IaHrl~ti~-~~D~I~Vl~~G~IvE~G~~~eLl~~~~g~f~ 1145 (1156)
.|+++.+ +.|+|+|||+++.+. -||||+||++|+|++.|+|+++++++...|.
T Consensus 175 ~l~~l~~~~g~tvi~vTHd~~~~~~~adri~vl~~G~i~~~g~~~~l~~~p~~~~~ 230 (359)
T 2yyz_A 175 EIKHLQQELGITSVYVTHDQAEAMTMASRIAVFNQGKLVQYGTPDEVYDSPKNMFV 230 (359)
T ss_dssp HHHHHHHHHCCEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHHHSCSBHHH
T ss_pred HHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEEECCEEEEeCCHHHHHhCcccHHH
Confidence 9988643 789999999998875 5999999999999999999999987665553
|
| >1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=5.1e-34 Score=314.07 Aligned_cols=187 Identities=23% Similarity=0.284 Sum_probs=161.0
Q ss_pred EEEEEEEEEcCCCCceeeCCCCCCHHHHHHHHhhcccCCCceEEEcCeeCCCCCh-HHHhhcCeeecccccccc-ccchh
Q 037346 949 NIRHLQVRYAPNLPLVLRGRTGSGKSTLIQTLFRIVESTAGHILIDGKDISLIGL-HDLRTRLSIIPQDPTMFE-GTTRS 1026 (1156)
Q Consensus 949 ~~~~Vsf~Y~~~~~~vL~G~SGsGKSTL~~lL~rl~~p~~G~I~idG~di~~i~~-~~LR~~i~~VpQdp~LF~-gTIr~ 1026 (1156)
.++||||..++++.++|.||||||||||+++|+|+++|++|+|.++|.++...+. +.+|++|++|||++.+|. .|++|
T Consensus 22 vl~~vsl~i~~Ge~~~liG~nGsGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~l~~~~tv~e 101 (257)
T 1g6h_A 22 ALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVYFENKDITNKEPAELYHYGIVRTFQTPQPLKEMTVLE 101 (257)
T ss_dssp EEEEECCEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHHTEEECCCCCGGGGGSBHHH
T ss_pred eEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHHHhCCEEEEccCCccCCCCcHHH
Confidence 4566666666777778889999999999999999999999999999999988765 346788999999999886 59999
Q ss_pred ccCCCC-----C-----------CC----HHHHHHHHHHcCCChHHHhhcCCcccc-------ccccccCCCEEEEecCC
Q 037346 1027 NLDPLE-----E-----------HA----DEQIWEALDKCQLGDEVRKKKGKLDSQ-------GRVLLKKSKVLVLDEAT 1079 (1156)
Q Consensus 1027 Nl~~~~-----~-----------~~----deei~~al~~~~l~~~i~~lp~gl~s~-------ARALLr~~~ILiLDEaT 1079 (1156)
|+.+.. . .. .+++.++++.+++.+.....|..|..+ ||||+++|+||||||||
T Consensus 102 nl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkQrv~iAraL~~~p~lllLDEPt 181 (257)
T 1g6h_A 102 NLLIGEICPGESPLNSLFYKKWIPKEEEMVEKAFKILEFLKLSHLYDRKAGELSGGQMKLVEIGRALMTNPKMIVMDEPI 181 (257)
T ss_dssp HHHGGGTSTTSCHHHHHHHCSSCCCCHHHHHHHHHHHHHTTCGGGTTSBGGGSCHHHHHHHHHHHHHHTCCSEEEEESTT
T ss_pred HHHHHHhhhccCcccccccccccCCHHHHHHHHHHHHHHcCCchhhCCCchhCCHHHHHHHHHHHHHHcCCCEEEEeCCc
Confidence 986421 1 11 245889999999988877777666654 89999999999999999
Q ss_pred cCCCHHHHHHHHHHHHHhc-CCceEEEeecCccccc-ccCEEEEEeCcEEeeecChhH
Q 037346 1080 ASVDTATDNQIQQTLRQHF-SDCTVVTIAHRITSVL-DSAMVLLLNHGLIKEYDSPTK 1135 (1156)
Q Consensus 1080 S~LD~~te~~I~~~l~~~~-~~~TvI~IaHrl~ti~-~~D~I~Vl~~G~IvE~G~~~e 1135 (1156)
|+||+.+.+.|.+.|+++. +++|||+|||+++.+. .||+|++|++|++++.|++++
T Consensus 182 s~LD~~~~~~l~~~l~~l~~~g~tvi~vtHd~~~~~~~~d~v~~l~~G~i~~~g~~~~ 239 (257)
T 1g6h_A 182 AGVAPGLAHDIFNHVLELKAKGITFLIIEHRLDIVLNYIDHLYVMFNGQIIAEGRGEE 239 (257)
T ss_dssp TTCCHHHHHHHHHHHHHHHHTTCEEEEECSCCSTTGGGCSEEEEEETTEEEEEEESHH
T ss_pred cCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEEeCHHH
Confidence 9999999999999998864 3799999999999886 599999999999999999999
|
| >1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-33 Score=323.42 Aligned_cols=196 Identities=19% Similarity=0.324 Sum_probs=164.7
Q ss_pred EEEEEEEEEEcCCCCceeeCCCCCCHHHHHHHHhhcccCCCceEEEcCeeCCCCChHHHhhcCeeeccccccccc-cchh
Q 037346 948 VNIRHLQVRYAPNLPLVLRGRTGSGKSTLIQTLFRIVESTAGHILIDGKDISLIGLHDLRTRLSIIPQDPTMFEG-TTRS 1026 (1156)
Q Consensus 948 I~~~~Vsf~Y~~~~~~vL~G~SGsGKSTL~~lL~rl~~p~~G~I~idG~di~~i~~~~LR~~i~~VpQdp~LF~g-TIr~ 1026 (1156)
..++||+|..++++.++|.||||||||||+++|+|+++|++|+|.+||.++.+++.. +++|++|||++.+|.. |+++
T Consensus 25 ~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~--~r~ig~v~Q~~~l~~~ltv~e 102 (372)
T 1v43_A 25 TAVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPTEGRIYFGDRDVTYLPPK--DRNISMVFQSYAVWPHMTVYE 102 (372)
T ss_dssp EEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCGG--GGTEEEEEC------CCCHHH
T ss_pred EEEeeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCceEEEECCEECCCCChh--hCcEEEEecCcccCCCCCHHH
Confidence 356666666677777788899999999999999999999999999999999887754 5789999999999975 9999
Q ss_pred ccCCCCC---CC----HHHHHHHHHHcCCChHHHhhcCCcccc-------ccccccCCCEEEEecCCcCCCHHHHHHHHH
Q 037346 1027 NLDPLEE---HA----DEQIWEALDKCQLGDEVRKKKGKLDSQ-------GRVLLKKSKVLVLDEATASVDTATDNQIQQ 1092 (1156)
Q Consensus 1027 Nl~~~~~---~~----deei~~al~~~~l~~~i~~lp~gl~s~-------ARALLr~~~ILiLDEaTS~LD~~te~~I~~ 1092 (1156)
|+.++-. .. ++++.++++.++|.++....|..|..+ ||||+++|++||||||||+||+.+...+.+
T Consensus 103 ni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~~~~LSGGq~QRvalArAL~~~P~lLLLDEP~s~LD~~~r~~l~~ 182 (372)
T 1v43_A 103 NIAFPLKIKKFPKDEIDKRVRWAAELLQIEELLNRYPAQLSGGQRQRVAVARAIVVEPDVLLMDEPLSNLDAKLRVAMRA 182 (372)
T ss_dssp HHHTTCC--CCCHHHHHHHHHHHHHHTTCGGGTTSCTTTCCSSCHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHH
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHH
Confidence 9976422 22 246889999999999888888777755 899999999999999999999999999999
Q ss_pred HHHHhcC--CceEEEeecCccccc-ccCEEEEEeCcEEeeecChhHHhcCCCChHH
Q 037346 1093 TLRQHFS--DCTVVTIAHRITSVL-DSAMVLLLNHGLIKEYDSPTKLLENKSSSFA 1145 (1156)
Q Consensus 1093 ~l~~~~~--~~TvI~IaHrl~ti~-~~D~I~Vl~~G~IvE~G~~~eLl~~~~g~f~ 1145 (1156)
.|+++.+ +.|+|+|||+++.+. -||||+||++|+|++.|+|++++.++...|.
T Consensus 183 ~l~~l~~~~g~tvi~vTHd~~~a~~~adri~vl~~G~i~~~g~~~~l~~~p~~~~~ 238 (372)
T 1v43_A 183 EIKKLQQKLKVTTIYVTHDQVEAMTMGDRIAVMNRGQLLQIGSPTEVYLRPNSVFV 238 (372)
T ss_dssp HHHHHHHHHTCEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHHHCCSBHHH
T ss_pred HHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHHhCcccHHH
Confidence 9988643 789999999998875 5999999999999999999999987665553
|
| >1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.3e-34 Score=325.14 Aligned_cols=194 Identities=23% Similarity=0.380 Sum_probs=167.6
Q ss_pred EEEEEEEEEcCCCCceeeCCCCCCHHHHHHHHhhcccCCCceEEEcCeeCCCCChHHHhhcCeeeccccccccc-cchhc
Q 037346 949 NIRHLQVRYAPNLPLVLRGRTGSGKSTLIQTLFRIVESTAGHILIDGKDISLIGLHDLRTRLSIIPQDPTMFEG-TTRSN 1027 (1156)
Q Consensus 949 ~~~~Vsf~Y~~~~~~vL~G~SGsGKSTL~~lL~rl~~p~~G~I~idG~di~~i~~~~LR~~i~~VpQdp~LF~g-TIr~N 1027 (1156)
.++||||..++++.++|.||||||||||+++|+|+++|++|+|.+||.++.+.+. .|++|++|||++.+|.. |++||
T Consensus 30 vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~--~~r~ig~v~Q~~~l~~~ltv~en 107 (355)
T 1z47_A 30 SVRGVSFQIREGEMVGLLGPSGSGKTTILRLIAGLERPTKGDVWIGGKRVTDLPP--QKRNVGLVFQNYALFQHMTVYDN 107 (355)
T ss_dssp CEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTCCG--GGSSEEEECGGGCCCTTSCHHHH
T ss_pred EEeeeEEEECCCCEEEEECCCCCcHHHHHHHHhCCCCCCccEEEECCEECCcCCh--hhCcEEEEecCcccCCCCCHHHH
Confidence 3566666666666677889999999999999999999999999999999987664 47889999999999976 99999
Q ss_pred cCCC---CCCC----HHHHHHHHHHcCCChHHHhhcCCcccc-------ccccccCCCEEEEecCCcCCCHHHHHHHHHH
Q 037346 1028 LDPL---EEHA----DEQIWEALDKCQLGDEVRKKKGKLDSQ-------GRVLLKKSKVLVLDEATASVDTATDNQIQQT 1093 (1156)
Q Consensus 1028 l~~~---~~~~----deei~~al~~~~l~~~i~~lp~gl~s~-------ARALLr~~~ILiLDEaTS~LD~~te~~I~~~ 1093 (1156)
+.++ ...+ ++++.++++.+++.++....|..|..+ ||||+++|+|||||||||+||+.+.+.+.+.
T Consensus 108 i~~~l~~~~~~~~~~~~~v~~~l~~~gL~~~~~r~~~~LSGGq~QRvalArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~ 187 (355)
T 1z47_A 108 VSFGLREKRVPKDEMDARVRELLRFMRLESYANRFPHELSGGQQQRVALARALAPRPQVLLFDEPFAAIDTQIRRELRTF 187 (355)
T ss_dssp HHHHHHHTTCCHHHHHHHHHHHHHHTTCGGGTTSCGGGSCHHHHHHHHHHHHHTTCCSEEEEESTTCCSSHHHHHHHHHH
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHcCChhHhcCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHH
Confidence 9652 1122 356889999999999888888777655 8999999999999999999999999999999
Q ss_pred HHHhcC--CceEEEeecCcccccc-cCEEEEEeCcEEeeecChhHHhcCCCChH
Q 037346 1094 LRQHFS--DCTVVTIAHRITSVLD-SAMVLLLNHGLIKEYDSPTKLLENKSSSF 1144 (1156)
Q Consensus 1094 l~~~~~--~~TvI~IaHrl~ti~~-~D~I~Vl~~G~IvE~G~~~eLl~~~~g~f 1144 (1156)
|+++.+ +.|+|+|||+++.+.. ||||+||++|+|++.|+|+++++++...|
T Consensus 188 l~~l~~~~g~tvi~vTHd~~~a~~~adri~vl~~G~i~~~g~~~~l~~~p~~~~ 241 (355)
T 1z47_A 188 VRQVHDEMGVTSVFVTHDQEEALEVADRVLVLHEGNVEQFGTPEEVYEKPGTLF 241 (355)
T ss_dssp HHHHHHHHTCEEEEECSCHHHHHHHCSEEEEEETTEEEEEECHHHHHHSCSSHH
T ss_pred HHHHHHhcCCEEEEECCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhCccchH
Confidence 988753 7899999999988764 99999999999999999999998765555
|
| >2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.5e-34 Score=317.05 Aligned_cols=190 Identities=19% Similarity=0.266 Sum_probs=161.2
Q ss_pred EEEEEEEEEcCCCCceeeCCCCCCHHHHHHHHhhcccCCCceEEEcCeeCC--CCChHHHhhcCeeecccccc-ccc--c
Q 037346 949 NIRHLQVRYAPNLPLVLRGRTGSGKSTLIQTLFRIVESTAGHILIDGKDIS--LIGLHDLRTRLSIIPQDPTM-FEG--T 1023 (1156)
Q Consensus 949 ~~~~Vsf~Y~~~~~~vL~G~SGsGKSTL~~lL~rl~~p~~G~I~idG~di~--~i~~~~LR~~i~~VpQdp~L-F~g--T 1023 (1156)
.++||+|..++++.++|.||||||||||+++|+|+++|++|+|.++|.++. ..+...+|++|++|||++.+ |.. |
T Consensus 36 vL~~isl~i~~Ge~~~liG~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~~i~~v~Q~~~~~~~~~lt 115 (279)
T 2ihy_A 36 ILKKISWQIAKGDKWILYGLNGAGKTTLLNILNAYEPATSGTVNLFGKMPGKVGYSAETVRQHIGFVSHSLLEKFQEGER 115 (279)
T ss_dssp EEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTBCCC---CCHHHHHTTEEEECHHHHTTSCTTSB
T ss_pred EEEeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCeEEEECCEEcccccCCHHHHcCcEEEEEcCcccccCCCCC
Confidence 344444444566667788999999999999999999999999999999998 77888899999999999975 555 9
Q ss_pred chhccCCCC--------CCC---HHHHHHHHHHcCCChHHHhhcCCcccc-------ccccccCCCEEEEecCCcCCCHH
Q 037346 1024 TRSNLDPLE--------EHA---DEQIWEALDKCQLGDEVRKKKGKLDSQ-------GRVLLKKSKVLVLDEATASVDTA 1085 (1156)
Q Consensus 1024 Ir~Nl~~~~--------~~~---deei~~al~~~~l~~~i~~lp~gl~s~-------ARALLr~~~ILiLDEaTS~LD~~ 1085 (1156)
++||+.++. ... .+++.++++.+++.+.....|..|..+ ||||+++|+|||||||||+||+.
T Consensus 116 v~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGqkqRv~lAraL~~~p~lLlLDEPts~LD~~ 195 (279)
T 2ihy_A 116 VIDVVISGAFKSIGVYQDIDDEIRNEAHQLLKLVGMSAKAQQYIGYLSTGEKQRVMIARALMGQPQVLILDEPAAGLDFI 195 (279)
T ss_dssp HHHHHHTTC---------CCHHHHHHHHHHHHHTTCGGGTTSBGGGSCHHHHHHHHHHHHHHTCCSEEEEESTTTTCCHH
T ss_pred HHHHHHhhhhhccccccCCcHHHHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHhCCCCEEEEeCCccccCHH
Confidence 999996531 112 246889999999988877767666644 89999999999999999999999
Q ss_pred HHHHHHHHHHHhcC-CceE--EEeecCccccc-ccCEEEEEeCcEEeeecChhHHhc
Q 037346 1086 TDNQIQQTLRQHFS-DCTV--VTIAHRITSVL-DSAMVLLLNHGLIKEYDSPTKLLE 1138 (1156)
Q Consensus 1086 te~~I~~~l~~~~~-~~Tv--I~IaHrl~ti~-~~D~I~Vl~~G~IvE~G~~~eLl~ 1138 (1156)
+.+.+.+.|+++.+ ++|| |+|||+++.+. .||+|++|++|+|++.|+++++++
T Consensus 196 ~~~~l~~~l~~l~~~g~tv~~iivtHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~ 252 (279)
T 2ihy_A 196 ARESLLSILDSLSDSYPTLAMIYVTHFIEEITANFSKILLLKDGQSIQQGAVEDILT 252 (279)
T ss_dssp HHHHHHHHHHHHHHHCTTCEEEEEESCGGGCCTTCCEEEEEETTEEEEEEEHHHHCS
T ss_pred HHHHHHHHHHHHHHCCCEEEEEEEecCHHHHHHhCCEEEEEECCEEEEECCHHHHhc
Confidence 99999999988643 7899 99999999885 599999999999999999999875
|
| >3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12 | Back alignment and structure |
|---|
Probab=100.00 E-value=7e-34 Score=323.39 Aligned_cols=195 Identities=19% Similarity=0.339 Sum_probs=173.2
Q ss_pred EEEEEEEEEcCCCCceeeCCCCCCHHHHHHHHhhcccCCCceEEEcCeeCCCCChHHHhhcCeeeccccccccc-cchhc
Q 037346 949 NIRHLQVRYAPNLPLVLRGRTGSGKSTLIQTLFRIVESTAGHILIDGKDISLIGLHDLRTRLSIIPQDPTMFEG-TTRSN 1027 (1156)
Q Consensus 949 ~~~~Vsf~Y~~~~~~vL~G~SGsGKSTL~~lL~rl~~p~~G~I~idG~di~~i~~~~LR~~i~~VpQdp~LF~g-TIr~N 1027 (1156)
.++||+|..++++.++|.||||||||||+++|+|+++|++|+|.+||.++.+.+. .|++|++|||++.+|.. |++||
T Consensus 15 ~l~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~~~g~~i~~~~~--~~r~ig~v~Q~~~l~~~ltv~en 92 (348)
T 3d31_A 15 SLDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHVPDSGRILLDGKDVTDLSP--EKHDIAFVYQNYSLFPHMNVKKN 92 (348)
T ss_dssp EEEEEEEEECTTCEEEEECCCTHHHHHHHHHHHTSSCCSEEEEEETTEECTTSCH--HHHTCEEECTTCCCCTTSCHHHH
T ss_pred EEeeeEEEEcCCCEEEEECCCCccHHHHHHHHHcCCCCCCcEEEECCEECCCCch--hhCcEEEEecCcccCCCCCHHHH
Confidence 7899999999999889999999999999999999999999999999999987654 47889999999999986 99999
Q ss_pred cCCC----CCCCHHHHHHHHHHcCCChHHHhhcCCcccc-------ccccccCCCEEEEecCCcCCCHHHHHHHHHHHHH
Q 037346 1028 LDPL----EEHADEQIWEALDKCQLGDEVRKKKGKLDSQ-------GRVLLKKSKVLVLDEATASVDTATDNQIQQTLRQ 1096 (1156)
Q Consensus 1028 l~~~----~~~~deei~~al~~~~l~~~i~~lp~gl~s~-------ARALLr~~~ILiLDEaTS~LD~~te~~I~~~l~~ 1096 (1156)
+.++ +...++++.++++.+++.++....|..|..+ ||||+++|++||||||||+||+.+.+.+.+.|++
T Consensus 93 l~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~LSgGq~QRvalAraL~~~P~lLLLDEP~s~LD~~~~~~l~~~l~~ 172 (348)
T 3d31_A 93 LEFGMRMKKIKDPKRVLDTARDLKIEHLLDRNPLTLSGGEQQRVALARALVTNPKILLLDEPLSALDPRTQENAREMLSV 172 (348)
T ss_dssp HHHHHHHHCCCCHHHHHHHHHHTTCTTTTTSCGGGSCHHHHHHHHHHHHTTSCCSEEEEESSSTTSCHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCCHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHH
Confidence 9653 1122378999999999999888888777755 8999999999999999999999999999999988
Q ss_pred hcC--CceEEEeecCccccc-ccCEEEEEeCcEEeeecChhHHhcCCCChHH
Q 037346 1097 HFS--DCTVVTIAHRITSVL-DSAMVLLLNHGLIKEYDSPTKLLENKSSSFA 1145 (1156)
Q Consensus 1097 ~~~--~~TvI~IaHrl~ti~-~~D~I~Vl~~G~IvE~G~~~eLl~~~~g~f~ 1145 (1156)
+.+ +.|+|+|||+++.+. -||+|+||++|+|++.|+|+++++++...|.
T Consensus 173 l~~~~g~tii~vTHd~~~~~~~adri~vl~~G~i~~~g~~~~~~~~p~~~~~ 224 (348)
T 3d31_A 173 LHKKNKLTVLHITHDQTEARIMADRIAVVMDGKLIQVGKPEEIFEKPVEGRV 224 (348)
T ss_dssp HHHHTTCEEEEEESCHHHHHHHCSEEEEESSSCEEEEECHHHHHSSCCTTHH
T ss_pred HHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHHHhCcccHHH
Confidence 743 789999999998764 5999999999999999999999987665553
|
| >2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A | Back alignment and structure |
|---|
Probab=100.00 E-value=3.9e-34 Score=308.31 Aligned_cols=186 Identities=21% Similarity=0.260 Sum_probs=162.0
Q ss_pred eEEEEEEEEEEcCCCCceeeCCCCCCHHHHHHHHhhcccCCCceEEEcCeeCCCCChHH---Hh-hcCeeeccccccccc
Q 037346 947 EVNIRHLQVRYAPNLPLVLRGRTGSGKSTLIQTLFRIVESTAGHILIDGKDISLIGLHD---LR-TRLSIIPQDPTMFEG 1022 (1156)
Q Consensus 947 ~I~~~~Vsf~Y~~~~~~vL~G~SGsGKSTL~~lL~rl~~p~~G~I~idG~di~~i~~~~---LR-~~i~~VpQdp~LF~g 1022 (1156)
...++||||..++++.++|.||||||||||+++|+|+++|++|+|.++|.++...+... +| +++++|||+|.+|..
T Consensus 17 ~~~l~~vsl~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~v~q~~~l~~~ 96 (224)
T 2pcj_A 17 YEILKGISLSVKKGEFVSIIGASGSGKSTLLYILGLLDAPTEGKVFLEGKEVDYTNEKELSLLRNRKLGFVFQFHYLIPE 96 (224)
T ss_dssp EEEEEEEEEEEETTCEEEEEECTTSCHHHHHHHHTTSSCCSEEEEEETTEECCSSCHHHHHHHHHHHEEEECSSCCCCTT
T ss_pred EeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCCCCHHHHHHHHhCcEEEEecCcccCCC
Confidence 34678888888888888899999999999999999999999999999999998887653 44 789999999998864
Q ss_pred -cchhccCCCC---CC----CHHHHHHHHHHcCCChHHHhhcCCcccc-------ccccccCCCEEEEecCCcCCCHHHH
Q 037346 1023 -TTRSNLDPLE---EH----ADEQIWEALDKCQLGDEVRKKKGKLDSQ-------GRVLLKKSKVLVLDEATASVDTATD 1087 (1156)
Q Consensus 1023 -TIr~Nl~~~~---~~----~deei~~al~~~~l~~~i~~lp~gl~s~-------ARALLr~~~ILiLDEaTS~LD~~te 1087 (1156)
|++||+.+.. .. .++++.++++.+++.+.....|..|..+ ||||+.+|++||||||||+||+++.
T Consensus 97 ~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~laral~~~p~lllLDEPt~~LD~~~~ 176 (224)
T 2pcj_A 97 LTALENVIVPMLKMGKPKKEAKERGEYLLSELGLGDKLSRKPYELSGGEQQRVAIARALANEPILLFADEPTGNLDSANT 176 (224)
T ss_dssp SCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTCTTCTTCCGGGSCHHHHHHHHHHHHTTTCCSEEEEESTTTTCCHHHH
T ss_pred CCHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCCCCCCHHHH
Confidence 9999986421 11 1356889999999988877777777654 8999999999999999999999999
Q ss_pred HHHHHHHHHhc-CCceEEEeecCcccccccCEEEEEeCcEEeeecC
Q 037346 1088 NQIQQTLRQHF-SDCTVVTIAHRITSVLDSAMVLLLNHGLIKEYDS 1132 (1156)
Q Consensus 1088 ~~I~~~l~~~~-~~~TvI~IaHrl~ti~~~D~I~Vl~~G~IvE~G~ 1132 (1156)
+.+.+.|+++. +++|||+|||+++.+..||+|++|++|++++.|+
T Consensus 177 ~~~~~~l~~l~~~g~tvi~vtHd~~~~~~~d~v~~l~~G~i~~~g~ 222 (224)
T 2pcj_A 177 KRVMDIFLKINEGGTSIVMVTHERELAELTHRTLEMKDGKVVGEIT 222 (224)
T ss_dssp HHHHHHHHHHHHTTCEEEEECSCHHHHTTSSEEEEEETTEEEEEEE
T ss_pred HHHHHHHHHHHHCCCEEEEEcCCHHHHHhCCEEEEEECCEEEEEee
Confidence 99999998874 4899999999999888899999999999999986
|
| >2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=100.00 E-value=5.6e-34 Score=325.49 Aligned_cols=196 Identities=21% Similarity=0.337 Sum_probs=172.3
Q ss_pred EEEEEEEEEEcCCCCceeeCCCCCCHHHHHHHHhhcccCCCceEEEcCeeCCCCChHHHhhcCeeeccccccccc-cchh
Q 037346 948 VNIRHLQVRYAPNLPLVLRGRTGSGKSTLIQTLFRIVESTAGHILIDGKDISLIGLHDLRTRLSIIPQDPTMFEG-TTRS 1026 (1156)
Q Consensus 948 I~~~~Vsf~Y~~~~~~vL~G~SGsGKSTL~~lL~rl~~p~~G~I~idG~di~~i~~~~LR~~i~~VpQdp~LF~g-TIr~ 1026 (1156)
..++||+|..++++.++|.||||||||||+++|+|+++|++|+|.+||.++.+++.. +++|++|||++.+|.. |+++
T Consensus 17 ~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~--~r~ig~v~Q~~~l~~~ltv~e 94 (362)
T 2it1_A 17 TALNNINLKIKDGEFMALLGPSGSGKSTLLYTIAGIYKPTSGKIYFDEKDVTELPPK--DRNVGLVFQNWALYPHMTVYK 94 (362)
T ss_dssp EEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCGG--GTTEEEECTTCCCCTTSCHHH
T ss_pred EEEEeeEEEECCCCEEEEECCCCchHHHHHHHHhcCCCCCceEEEECCEECCcCCHh--HCcEEEEecCcccCCCCCHHH
Confidence 468888988888888899999999999999999999999999999999999987764 5789999999999976 9999
Q ss_pred ccCCC---CCCC----HHHHHHHHHHcCCChHHHhhcCCcccc-------ccccccCCCEEEEecCCcCCCHHHHHHHHH
Q 037346 1027 NLDPL---EEHA----DEQIWEALDKCQLGDEVRKKKGKLDSQ-------GRVLLKKSKVLVLDEATASVDTATDNQIQQ 1092 (1156)
Q Consensus 1027 Nl~~~---~~~~----deei~~al~~~~l~~~i~~lp~gl~s~-------ARALLr~~~ILiLDEaTS~LD~~te~~I~~ 1092 (1156)
|+.++ .... ++++.++++.+++.++....|..|..+ ||||+++|++||||||||+||+.+...+.+
T Consensus 95 ni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~~~~LSGGq~QRvalArAL~~~P~lLLLDEP~s~LD~~~r~~l~~ 174 (362)
T 2it1_A 95 NIAFPLELRKAPREEIDKKVREVAKMLHIDKLLNRYPWQLSGGQQQRVAIARALVKEPEVLLLDEPLSNLDALLRLEVRA 174 (362)
T ss_dssp HHHHHHHHTTCCHHHHHHHHHHHHHHTTCTTCTTCCGGGSCHHHHHHHHHHHHHTTCCSEEEEESGGGGSCHHHHHHHHH
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHcCCchHhhCChhhCCHHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHH
Confidence 99653 1122 356889999999999888888777655 899999999999999999999999999999
Q ss_pred HHHHhcC--CceEEEeecCccccc-ccCEEEEEeCcEEeeecChhHHhcCCCChHH
Q 037346 1093 TLRQHFS--DCTVVTIAHRITSVL-DSAMVLLLNHGLIKEYDSPTKLLENKSSSFA 1145 (1156)
Q Consensus 1093 ~l~~~~~--~~TvI~IaHrl~ti~-~~D~I~Vl~~G~IvE~G~~~eLl~~~~g~f~ 1145 (1156)
.|+++.+ +.|+|+|||+++.+. -||+|+||++|+|++.|+|++++.++...|.
T Consensus 175 ~l~~l~~~~g~tvi~vTHd~~~a~~~adri~vl~~G~i~~~g~~~~~~~~p~~~~~ 230 (362)
T 2it1_A 175 ELKRLQKELGITTVYVTHDQAEALAMADRIAVIREGEILQVGTPDEVYYKPKYKFV 230 (362)
T ss_dssp HHHHHHHHHTCEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHHHSCSBHHH
T ss_pred HHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhCccchHH
Confidence 9988743 789999999998875 5999999999999999999999987665553
|
| >1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=5e-34 Score=326.02 Aligned_cols=197 Identities=16% Similarity=0.266 Sum_probs=171.4
Q ss_pred EEEEEEEEEcCCCCceeeCCCCCCHHHHHHHHhhcccCCCceEEEcCeeCCCCC---hHHHhhcCeeeccccccccc-cc
Q 037346 949 NIRHLQVRYAPNLPLVLRGRTGSGKSTLIQTLFRIVESTAGHILIDGKDISLIG---LHDLRTRLSIIPQDPTMFEG-TT 1024 (1156)
Q Consensus 949 ~~~~Vsf~Y~~~~~~vL~G~SGsGKSTL~~lL~rl~~p~~G~I~idG~di~~i~---~~~LR~~i~~VpQdp~LF~g-TI 1024 (1156)
.++||+|..++++.++|.||||||||||+++|+|+++|++|+|.+||.++.+.+ ....|++|++|||++.+|.. |+
T Consensus 20 vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~~~~~~~r~ig~v~Q~~~l~~~ltv 99 (353)
T 1oxx_K 20 ALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPSTGELYFDDRLVASNGKLIVPPEDRKIGMVFQTWALYPNLTA 99 (353)
T ss_dssp EEEEEEEEECTTCEEEEECSCHHHHHHHHHHHHTSSCCSEEEEEETTEEEEETTEESSCGGGSCEEEEETTSCCCTTSCH
T ss_pred eEeceEEEECCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECcccccccCChhhCCEEEEeCCCccCCCCCH
Confidence 688888888888888899999999999999999999999999999999987621 33457889999999999976 99
Q ss_pred hhccCCCCC---CC----HHHHHHHHHHcCCChHHHhhcCCcccc-------ccccccCCCEEEEecCCcCCCHHHHHHH
Q 037346 1025 RSNLDPLEE---HA----DEQIWEALDKCQLGDEVRKKKGKLDSQ-------GRVLLKKSKVLVLDEATASVDTATDNQI 1090 (1156)
Q Consensus 1025 r~Nl~~~~~---~~----deei~~al~~~~l~~~i~~lp~gl~s~-------ARALLr~~~ILiLDEaTS~LD~~te~~I 1090 (1156)
++|+.++.. .. ++++.++++.++|.++....|..|..+ ||||+++|+|||||||||+||+.+...+
T Consensus 100 ~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~LSGGq~QRvalAraL~~~P~lLLLDEP~s~LD~~~r~~l 179 (353)
T 1oxx_K 100 FENIAFPLTNMKMSKEEIRKRVEEVAKILDIHHVLNHFPRELSGAQQQRVALARALVKDPSLLLLDEPFSNLDARMRDSA 179 (353)
T ss_dssp HHHHHGGGTTSSCCHHHHHHHHHHHHHHTTCGGGTTSCGGGSCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCGGGHHHH
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHH
Confidence 999975321 22 356889999999999888888777655 8999999999999999999999999999
Q ss_pred HHHHHHhcC--CceEEEeecCccccc-ccCEEEEEeCcEEeeecChhHHhcCCCChHH
Q 037346 1091 QQTLRQHFS--DCTVVTIAHRITSVL-DSAMVLLLNHGLIKEYDSPTKLLENKSSSFA 1145 (1156)
Q Consensus 1091 ~~~l~~~~~--~~TvI~IaHrl~ti~-~~D~I~Vl~~G~IvE~G~~~eLl~~~~g~f~ 1145 (1156)
.+.|+++.+ +.|+|+|||+++.+. -||||+||++|+|++.|+|++++.++...|.
T Consensus 180 ~~~l~~l~~~~g~tvi~vTHd~~~~~~~adri~vl~~G~i~~~g~~~~l~~~p~~~~~ 237 (353)
T 1oxx_K 180 RALVKEVQSRLGVTLLVVSHDPADIFAIADRVGVLVKGKLVQVGKPEDLYDNPVSIQV 237 (353)
T ss_dssp HHHHHHHHHHHCCEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHHHSCSSHHH
T ss_pred HHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhCcccHHH
Confidence 999988743 789999999998875 4999999999999999999999987665553
|
| >2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=4.1e-33 Score=305.49 Aligned_cols=189 Identities=20% Similarity=0.207 Sum_probs=159.5
Q ss_pred eEEEEEEEEEEcCCCCceeeCCCCCCHHHHHHHHhhc--ccCCCceEEEcCeeCCCCChHHH-hhcCeeeccccccccc-
Q 037346 947 EVNIRHLQVRYAPNLPLVLRGRTGSGKSTLIQTLFRI--VESTAGHILIDGKDISLIGLHDL-RTRLSIIPQDPTMFEG- 1022 (1156)
Q Consensus 947 ~I~~~~Vsf~Y~~~~~~vL~G~SGsGKSTL~~lL~rl--~~p~~G~I~idG~di~~i~~~~L-R~~i~~VpQdp~LF~g- 1022 (1156)
...++||||+..+++.++|.||||||||||+++|+|+ ++|++|+|.+||.++.+.+.... |+.+++|||+|.+|.+
T Consensus 16 ~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLlk~l~Gl~~~~p~~G~I~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~ 95 (250)
T 2d2e_A 16 ETILKGVNLVVPKGEVHALMGPNGAGKSTLGKILAGDPEYTVERGEILLDGENILELSPDERARKGLFLAFQYPVEVPGV 95 (250)
T ss_dssp EEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTCTTCEEEEEEEEETTEECTTSCHHHHHHTTBCCCCCCCC-CCSC
T ss_pred EEEEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCceEEEECCEECCCCCHHHHHhCcEEEeccCCccccCC
Confidence 3468888888888888889999999999999999999 89999999999999998887765 4569999999999986
Q ss_pred cchhccCCC-----C-CCC----HHHHHHHHHHcCCC-hHHHhhcCC-cccc-------ccccccCCCEEEEecCCcCCC
Q 037346 1023 TTRSNLDPL-----E-EHA----DEQIWEALDKCQLG-DEVRKKKGK-LDSQ-------GRVLLKKSKVLVLDEATASVD 1083 (1156)
Q Consensus 1023 TIr~Nl~~~-----~-~~~----deei~~al~~~~l~-~~i~~lp~g-l~s~-------ARALLr~~~ILiLDEaTS~LD 1083 (1156)
|+++|+.+. + ... ++++.++++.+++. +.....|.. |..+ ||||+++|+|||||||||+||
T Consensus 96 tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~LSgGqkQrv~iAraL~~~p~lllLDEPts~LD 175 (250)
T 2d2e_A 96 TIANFLRLALQAKLGREVGVAEFWTKVKKALELLDWDESYLSRYLNEGFSGGEKKRNEILQLLVLEPTYAVLDETDSGLD 175 (250)
T ss_dssp BHHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHTCCGGGGGSBTTCC----HHHHHHHHHHHHHCCSEEEEECGGGTTC
T ss_pred CHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHcCCChhHhcCCcccCCCHHHHHHHHHHHHHHcCCCEEEEeCCCcCCC
Confidence 999998532 1 111 35688899999994 666666665 6544 899999999999999999999
Q ss_pred HHHHHHHHHHHHHhc-CCceEEEeecCcccccc--cCEEEEEeCcEEeeecChhH
Q 037346 1084 TATDNQIQQTLRQHF-SDCTVVTIAHRITSVLD--SAMVLLLNHGLIKEYDSPTK 1135 (1156)
Q Consensus 1084 ~~te~~I~~~l~~~~-~~~TvI~IaHrl~ti~~--~D~I~Vl~~G~IvE~G~~~e 1135 (1156)
+++.+.+.+.|++.. +++|||+|||+++.+.. ||+|++|++|++++.|+++.
T Consensus 176 ~~~~~~l~~~l~~l~~~g~tvi~vtHd~~~~~~~~~d~v~~l~~G~i~~~g~~~~ 230 (250)
T 2d2e_A 176 IDALKVVARGVNAMRGPNFGALVITHYQRILNYIQPDKVHVMMDGRVVATGGPEL 230 (250)
T ss_dssp HHHHHHHHHHHHHHCSTTCEEEEECSSSGGGGTSCCSEEEEEETTEEEEEESHHH
T ss_pred HHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhcCCEEEEEECCEEEEEeCHHH
Confidence 999999999999875 47899999999999886 59999999999999999983
|
| >1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A | Back alignment and structure |
|---|
Probab=100.00 E-value=2.5e-33 Score=322.17 Aligned_cols=196 Identities=18% Similarity=0.362 Sum_probs=170.6
Q ss_pred EEEEEEEEEEcCCCCceeeCCCCCCHHHHHHHHhhcccCCCceEEEcCeeCCC------CChHHHhhcCeeecccccccc
Q 037346 948 VNIRHLQVRYAPNLPLVLRGRTGSGKSTLIQTLFRIVESTAGHILIDGKDISL------IGLHDLRTRLSIIPQDPTMFE 1021 (1156)
Q Consensus 948 I~~~~Vsf~Y~~~~~~vL~G~SGsGKSTL~~lL~rl~~p~~G~I~idG~di~~------i~~~~LR~~i~~VpQdp~LF~ 1021 (1156)
..++||+|..++++.++|.||||||||||+++|+|+++|++|+|.+||.++.+ ++.. +++|+||||++.+|.
T Consensus 17 ~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~~~~~~~~~~~~~~--~r~ig~v~Q~~~l~~ 94 (372)
T 1g29_1 17 TAVREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEEPSRGQIYIGDKLVADPEKGIFVPPK--DRDIAMVFQSYALYP 94 (372)
T ss_dssp EEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEEEEEGGGTEECCGG--GSSEEEECSCCCCCT
T ss_pred EEEeeeEEEEcCCCEEEEECCCCcHHHHHHHHHHcCCCCCccEEEECCEECccccccccCCHh--HCCEEEEeCCCccCC
Confidence 46788888888888888999999999999999999999999999999999876 5543 678999999999996
Q ss_pred c-cchhccCCCC---CCC----HHHHHHHHHHcCCChHHHhhcCCcccc-------ccccccCCCEEEEecCCcCCCHHH
Q 037346 1022 G-TTRSNLDPLE---EHA----DEQIWEALDKCQLGDEVRKKKGKLDSQ-------GRVLLKKSKVLVLDEATASVDTAT 1086 (1156)
Q Consensus 1022 g-TIr~Nl~~~~---~~~----deei~~al~~~~l~~~i~~lp~gl~s~-------ARALLr~~~ILiLDEaTS~LD~~t 1086 (1156)
. |+++|+.++. ... ++++.++++.++|.++....|..|..+ ||||+++|++||||||||+||+.+
T Consensus 95 ~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~~~~LSGGq~QRvalArAL~~~P~lLLLDEP~s~LD~~~ 174 (372)
T 1g29_1 95 HMTVYDNIAFPLKLRKVPRQEIDQRVREVAELLGLTELLNRKPRELSGGQRQRVALGRAIVRKPQVFLMDEPLSNLDAKL 174 (372)
T ss_dssp TSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHTCGGGTTCCGGGSCHHHHHHHHHHHHHHTCCSEEEEECTTTTSCHHH
T ss_pred CCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCchHhcCCcccCCHHHHHHHHHHHHHhcCCCEEEECCCCccCCHHH
Confidence 4 9999997531 122 346889999999998888888777654 899999999999999999999999
Q ss_pred HHHHHHHHHHhcC--CceEEEeecCccccc-ccCEEEEEeCcEEeeecChhHHhcCCCChHH
Q 037346 1087 DNQIQQTLRQHFS--DCTVVTIAHRITSVL-DSAMVLLLNHGLIKEYDSPTKLLENKSSSFA 1145 (1156)
Q Consensus 1087 e~~I~~~l~~~~~--~~TvI~IaHrl~ti~-~~D~I~Vl~~G~IvE~G~~~eLl~~~~g~f~ 1145 (1156)
...+.+.|+++.+ +.|+|+|||+++.+. -||+|+||++|+|++.|+|++++.++...|.
T Consensus 175 r~~l~~~l~~l~~~~g~tvi~vTHd~~~a~~~adri~vl~~G~i~~~g~~~~l~~~p~~~~~ 236 (372)
T 1g29_1 175 RVRMRAELKKLQRQLGVTTIYVTHDQVEAMTMGDRIAVMNRGVLQQVGSPDEVYDKPANTFV 236 (372)
T ss_dssp HHHHHHHHHHHHHHHTCEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHHHSCSBHHH
T ss_pred HHHHHHHHHHHHHhcCCEEEEECCCHHHHHHhCCEEEEEeCCEEEEeCCHHHHHhCcccHHH
Confidence 9999999988653 789999999998875 5999999999999999999999987666553
|
| >3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B* | Back alignment and structure |
|---|
Probab=99.98 E-value=6.1e-33 Score=339.08 Aligned_cols=198 Identities=22% Similarity=0.227 Sum_probs=168.1
Q ss_pred ccEEEeeeEEEeCCCCCCCccccceEEeeCCeEEEEEcCCCCChHHHHHHHhCCCCCCCcEEEEcCeEEEEecCCcC-CC
Q 037346 356 TAIEIIDGSFSWDFSSPNPTLRNINLKVFHGMRVAVCGTVGSGKSSCLSCILGGVPKESGIIRLCGTKAYVAQSPWI-QS 434 (1156)
Q Consensus 356 ~~i~~~~~~f~~~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKSTll~~i~g~~~~~~G~i~~~g~~~~v~Q~~~~-~~ 434 (1156)
..++++|+++.|. + ..|+++||++++||+++|+||||||||||+++|+|+++|++|+|.+..+++|+||++.. +.
T Consensus 356 ~~l~~~~l~~~~~---~-~~l~~~~~~v~~Gei~~i~G~NGsGKSTLlk~l~Gl~~p~~G~I~~~~~i~~v~Q~~~~~~~ 431 (607)
T 3bk7_A 356 TLVEYPRLVKDYG---S-FKLEVEPGEIRKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKVEWDLTVAYKPQYIKAEYE 431 (607)
T ss_dssp EEEEECCEEEECS---S-CEEEECCEEEETTCEEEEECCTTSSHHHHHHHHHTSSCCSBSCCCCCCCEEEECSSCCCCCS
T ss_pred eEEEEeceEEEec---c-eEEEecccccCCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEEeeEEEEEecCccCCCC
Confidence 4689999999995 2 47999999999999999999999999999999999999999999988889999999865 56
Q ss_pred ccHHHHhhcC-C-C-CCHHHHHHHHHHhCCchhhhhCCCCCccccccCCCCCCHHHHHHHHHHHhhccCCCeeeeeCCCC
Q 037346 435 GKIEENILFG-K-E-MDRERYERVLEACSLKKDLEVLPFGDQTIIGERGINLSGGQKQRIQIARPLYQDADIFLLDDPFS 511 (1156)
Q Consensus 435 ~ti~eni~~~-~-~-~~~~~~~~~~~~~~l~~~~~~~~~g~~t~v~~~g~~LSgGqkqRi~lAral~~~~~illlDep~s 511 (1156)
.||.||+... . . .+.++.+++++.+++.+.. .+...+|||||||||+|||||+.+|++|||||||+
T Consensus 432 ~tv~e~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-----------~~~~~~LSGGe~QRv~iAraL~~~p~lLlLDEPt~ 500 (607)
T 3bk7_A 432 GTVYELLSKIDSSKLNSNFYKTELLKPLGIIDLY-----------DRNVEDLSGGELQRVAIAATLLRDADIYLLDEPSA 500 (607)
T ss_dssp SBHHHHHHHHHHHHHHCHHHHHHTHHHHTCTTTT-----------TSBGGGCCHHHHHHHHHHHHHTSCCSEEEEECTTT
T ss_pred CcHHHHHHhhhccCCCHHHHHHHHHHHcCCchHh-----------cCChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCcc
Confidence 7999998753 1 1 1234556677777765332 34457899999999999999999999999999999
Q ss_pred CcCHHHHHHHHHHHHh---cCCCEEEEEccCCCccc-cCCEEEEEeC--CeEEEccChHHHHh
Q 037346 512 PVDDHTGAHLFKFCWV---SSSKTVIYATHQVEFLP-AADLILVIKD--GKITQAGKYSDILN 568 (1156)
Q Consensus 512 ~lD~~~~~~i~~~~~~---~~~~tvi~vtH~~~~~~-~~d~i~~l~~--G~i~~~g~~~~l~~ 568 (1156)
+||+.++..+.+.+.. ..|+|+|+||||++++. .||+|++|++ |++...|+++++..
T Consensus 501 ~LD~~~~~~l~~~l~~l~~~~g~tvi~vsHd~~~~~~~adrv~vl~~~~g~~~~~g~p~~~~~ 563 (607)
T 3bk7_A 501 YLDVEQRLAVSRAIRHLMEKNEKTALVVEHDVLMIDYVSDRLIVFEGEPGRHGRALPPMGMRE 563 (607)
T ss_dssp TCCHHHHHHHHHHHHHHHHHTTCEEEEECSCHHHHHHHCSEEEEEEEETTTEEEECCCEEHHH
T ss_pred CCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEcCCcceEEecCCHHHHHh
Confidence 9999999988876643 35899999999999986 5999999986 88888899988764
|
| >2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii} | Back alignment and structure |
|---|
Probab=99.98 E-value=7.9e-33 Score=304.08 Aligned_cols=184 Identities=21% Similarity=0.320 Sum_probs=164.5
Q ss_pred eEEEEEEEEEEcCCCCceeeCCCCCCHHHHHHHHhhcccCCCceEEEcCeeCCCCChHHHhhcCe-eeccccccccccch
Q 037346 947 EVNIRHLQVRYAPNLPLVLRGRTGSGKSTLIQTLFRIVESTAGHILIDGKDISLIGLHDLRTRLS-IIPQDPTMFEGTTR 1025 (1156)
Q Consensus 947 ~I~~~~Vsf~Y~~~~~~vL~G~SGsGKSTL~~lL~rl~~p~~G~I~idG~di~~i~~~~LR~~i~-~VpQdp~LF~gTIr 1025 (1156)
...++||+|..+ ++.++|.||||||||||+++|+|++ |++|+|.++|.++.+. .. |++++ ||||+|.+ ..|++
T Consensus 18 ~~il~~vsl~i~-Ge~~~i~G~NGsGKSTLlk~l~Gl~-p~~G~I~~~g~~~~~~--~~-~~~i~~~v~Q~~~l-~~tv~ 91 (263)
T 2pjz_A 18 RFSLENINLEVN-GEKVIILGPNGSGKTTLLRAISGLL-PYSGNIFINGMEVRKI--RN-YIRYSTNLPEAYEI-GVTVN 91 (263)
T ss_dssp EEEEEEEEEEEC-SSEEEEECCTTSSHHHHHHHHTTSS-CCEEEEEETTEEGGGC--SC-CTTEEECCGGGSCT-TSBHH
T ss_pred ceeEEeeeEEEC-CEEEEEECCCCCCHHHHHHHHhCCC-CCCcEEEECCEECcch--HH-hhheEEEeCCCCcc-CCcHH
Confidence 347899999999 9989999999999999999999999 9999999999998765 33 78899 99999999 89999
Q ss_pred hccCCCC---CCCHHHHHHHHHHcCCC-hHHHhhcCCcccc-------ccccccCCCEEEEecCCcCCCHHHHHHHHHHH
Q 037346 1026 SNLDPLE---EHADEQIWEALDKCQLG-DEVRKKKGKLDSQ-------GRVLLKKSKVLVLDEATASVDTATDNQIQQTL 1094 (1156)
Q Consensus 1026 ~Nl~~~~---~~~deei~~al~~~~l~-~~i~~lp~gl~s~-------ARALLr~~~ILiLDEaTS~LD~~te~~I~~~l 1094 (1156)
||+.++. ...++++.++++..++. +.....|..|..+ ||||+++|++||||||||+||+++.+.+.+.|
T Consensus 92 enl~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LSgGqkqRv~lAraL~~~p~lllLDEPts~LD~~~~~~l~~~L 171 (263)
T 2pjz_A 92 DIVYLYEELKGLDRDLFLEMLKALKLGEEILRRKLYKLSAGQSVLVRTSLALASQPEIVGLDEPFENVDAARRHVISRYI 171 (263)
T ss_dssp HHHHHHHHHTCCCHHHHHHHHHHTTCCGGGGGSBGGGSCHHHHHHHHHHHHHHTCCSEEEEECTTTTCCHHHHHHHHHHH
T ss_pred HHHHHhhhhcchHHHHHHHHHHHcCCChhHhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEECCccccCHHHHHHHHHHH
Confidence 9996532 34577899999999998 8777767666654 89999999999999999999999999999999
Q ss_pred HHhcCCceEEEeecCccccc-ccC-EEEEEeCcEEeeecChhHHhc
Q 037346 1095 RQHFSDCTVVTIAHRITSVL-DSA-MVLLLNHGLIKEYDSPTKLLE 1138 (1156)
Q Consensus 1095 ~~~~~~~TvI~IaHrl~ti~-~~D-~I~Vl~~G~IvE~G~~~eLl~ 1138 (1156)
++..+ |+|+|||+++.+. .|| +|++|++|++++.|+++++.+
T Consensus 172 ~~~~~--tviivtHd~~~~~~~~d~~i~~l~~G~i~~~g~~~~l~~ 215 (263)
T 2pjz_A 172 KEYGK--EGILVTHELDMLNLYKEYKAYFLVGNRLQGPISVSELLE 215 (263)
T ss_dssp HHSCS--EEEEEESCGGGGGGCTTSEEEEEETTEEEEEEEHHHHHT
T ss_pred HHhcC--cEEEEEcCHHHHHHhcCceEEEEECCEEEEecCHHHHHh
Confidence 98754 9999999999875 699 999999999999999999984
|
| >2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A | Back alignment and structure |
|---|
Probab=99.98 E-value=3.4e-33 Score=308.82 Aligned_cols=190 Identities=18% Similarity=0.213 Sum_probs=157.3
Q ss_pred EEEEEEEEEcCCCCceeeCCCCCCHHHHHHHHhhc--ccCCCceEEEcCeeCCCCChHHH-hhcCeeeccccccccc-cc
Q 037346 949 NIRHLQVRYAPNLPLVLRGRTGSGKSTLIQTLFRI--VESTAGHILIDGKDISLIGLHDL-RTRLSIIPQDPTMFEG-TT 1024 (1156)
Q Consensus 949 ~~~~Vsf~Y~~~~~~vL~G~SGsGKSTL~~lL~rl--~~p~~G~I~idG~di~~i~~~~L-R~~i~~VpQdp~LF~g-TI 1024 (1156)
.++||||..++++.++|.||||||||||+++|+|+ ++|++|+|.++|.++.+.+.... |+.+++|||+|.+|.+ |+
T Consensus 35 vl~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~l~Gl~~~~p~~G~I~~~g~~i~~~~~~~~~~~~i~~v~Q~~~l~~~~tv 114 (267)
T 2zu0_C 35 ILRGLSLDVHPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGGTVEFKGKDLLALSPEDRAGEGIFMAFQYPVEIPGVSN 114 (267)
T ss_dssp EEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTCTTCEEEEEEEEETTEEGGGSCHHHHHHHTEEEECSSCCCCTTCBH
T ss_pred EEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEECCcCCHHHHhhCCEEEEccCccccccccH
Confidence 45555555556666778899999999999999999 57999999999999998887665 4569999999999876 88
Q ss_pred hhccCCC--------C--CCC----HHHHHHHHHHcCCCh-HHHhhcCC-cccc-------ccccccCCCEEEEecCCcC
Q 037346 1025 RSNLDPL--------E--EHA----DEQIWEALDKCQLGD-EVRKKKGK-LDSQ-------GRVLLKKSKVLVLDEATAS 1081 (1156)
Q Consensus 1025 r~Nl~~~--------~--~~~----deei~~al~~~~l~~-~i~~lp~g-l~s~-------ARALLr~~~ILiLDEaTS~ 1081 (1156)
++|+... . ..+ ++++.++++.+++.+ .....|.. |..+ ||||+++|+|||||||||+
T Consensus 115 ~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~LSgGq~QRv~iAraL~~~p~lLlLDEPts~ 194 (267)
T 2zu0_C 115 QFFLQTALNAVRSYRGQETLDRFDFQDLMEEKIALLKMPEDLLTRSVNVGFSGGEKKRNDILQMAVLEPELCILDESDSG 194 (267)
T ss_dssp HHHHHHHHHHHHHGGGCCCCCHHHHHHHHHHHHHHTTCCTTTTTSBTTTTCCHHHHHHHHHHHHHHHCCSEEEEESTTTT
T ss_pred HHHHHHHHHhhhhhhccccCCHHHHHHHHHHHHHHcCCChhHhcCCcccCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCC
Confidence 8887431 1 122 245889999999964 44555543 5544 8999999999999999999
Q ss_pred CCHHHHHHHHHHHHHhc-CCceEEEeecCcccccc--cCEEEEEeCcEEeeecChhHHhc
Q 037346 1082 VDTATDNQIQQTLRQHF-SDCTVVTIAHRITSVLD--SAMVLLLNHGLIKEYDSPTKLLE 1138 (1156)
Q Consensus 1082 LD~~te~~I~~~l~~~~-~~~TvI~IaHrl~ti~~--~D~I~Vl~~G~IvE~G~~~eLl~ 1138 (1156)
||+.+.+.+.+.|+++. +++|||+|||+++.+.. ||+|++|++|++++.|+++++..
T Consensus 195 LD~~~~~~l~~~l~~l~~~g~tviivtHd~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~ 254 (267)
T 2zu0_C 195 LDIDALKVVADGVNSLRDGKRSFIIVTHYQRILDYIKPDYVHVLYQGRIVKSGDFTLVKQ 254 (267)
T ss_dssp CCHHHHHHHHHHHHTTCCSSCEEEEECSSGGGGGTSCCSEEEEEETTEEEEEECTTHHHH
T ss_pred CCHHHHHHHHHHHHHHHhcCCEEEEEeeCHHHHHhhcCCEEEEEECCEEEEEcCHHHHhh
Confidence 99999999999999874 47899999999999876 89999999999999999998753
|
| >1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=99.98 E-value=6.1e-33 Score=336.07 Aligned_cols=198 Identities=22% Similarity=0.232 Sum_probs=165.4
Q ss_pred ccEEEeeeEEEeCCCCCCCccccceEEeeCCeEEEEEcCCCCChHHHHHHHhCCCCCCCcEEEEcCeEEEEecCCcC-CC
Q 037346 356 TAIEIIDGSFSWDFSSPNPTLRNINLKVFHGMRVAVCGTVGSGKSSCLSCILGGVPKESGIIRLCGTKAYVAQSPWI-QS 434 (1156)
Q Consensus 356 ~~i~~~~~~f~~~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKSTll~~i~g~~~~~~G~i~~~g~~~~v~Q~~~~-~~ 434 (1156)
..++++|+++.|. + ..|+++||+|++||+++|+||||||||||+++|+|+++|++|+|.+...++|+||++.. +.
T Consensus 286 ~~l~~~~l~~~~~---~-~~l~~~~~~i~~Ge~~~i~G~NGsGKSTLlk~l~Gl~~p~~G~i~~~~~i~~v~Q~~~~~~~ 361 (538)
T 1yqt_A 286 TLVTYPRLVKDYG---S-FRLEVEPGEIKKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKIEWDLTVAYKPQYIKADYE 361 (538)
T ss_dssp EEEEECCEEEEET---T-EEEEECCEEEETTCEEEEECCTTSSHHHHHHHHHTSSCCSBCCCCCCCCEEEECSSCCCCCS
T ss_pred eEEEEeeEEEEEC---C-EEEEeCccccCCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECceEEEEecCCcCCCC
Confidence 4689999999995 2 46999999999999999999999999999999999999999999988889999999865 56
Q ss_pred ccHHHHhhcC-C-C-CCHHHHHHHHHHhCCchhhhhCCCCCccccccCCCCCCHHHHHHHHHHHhhccCCCeeeeeCCCC
Q 037346 435 GKIEENILFG-K-E-MDRERYERVLEACSLKKDLEVLPFGDQTIIGERGINLSGGQKQRIQIARPLYQDADIFLLDDPFS 511 (1156)
Q Consensus 435 ~ti~eni~~~-~-~-~~~~~~~~~~~~~~l~~~~~~~~~g~~t~v~~~g~~LSgGqkqRi~lAral~~~~~illlDep~s 511 (1156)
.||.||+... . . .+.++.+++++.+++.+ ...+...+|||||||||+|||||+.+|++|||||||+
T Consensus 362 ~tv~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-----------~~~~~~~~LSGGe~qrv~lAraL~~~p~lLlLDEPt~ 430 (538)
T 1yqt_A 362 GTVYELLSKIDASKLNSNFYKTELLKPLGIID-----------LYDREVNELSGGELQRVAIAATLLRDADIYLLDEPSA 430 (538)
T ss_dssp SBHHHHHHHHHHHHHTCHHHHHHTTTTTTCGG-----------GTTSBGGGCCHHHHHHHHHHHHHTSCCSEEEEECTTT
T ss_pred CcHHHHHHhhhccCCCHHHHHHHHHHHcCChh-----------hhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCcc
Confidence 7999988643 1 1 12333444555444432 2345567899999999999999999999999999999
Q ss_pred CcCHHHHHHHHHHHHh---cCCCEEEEEccCCCccc-cCCEEEEEeC--CeEEEccChHHHHh
Q 037346 512 PVDDHTGAHLFKFCWV---SSSKTVIYATHQVEFLP-AADLILVIKD--GKITQAGKYSDILN 568 (1156)
Q Consensus 512 ~lD~~~~~~i~~~~~~---~~~~tvi~vtH~~~~~~-~~d~i~~l~~--G~i~~~g~~~~l~~ 568 (1156)
+||+.++..+.+.+.. ..|+|+|+||||++++. .||+|++|++ |++...|+++++..
T Consensus 431 ~LD~~~~~~i~~~l~~l~~~~g~tvi~vsHd~~~~~~~~drv~vl~~~~~~~~~~g~~~~~~~ 493 (538)
T 1yqt_A 431 YLDVEQRLAVSRAIRHLMEKNEKTALVVEHDVLMIDYVSDRLMVFEGEPGKYGRALPPMGMRE 493 (538)
T ss_dssp TCCHHHHHHHHHHHHHHHHHHTCEEEEECSCHHHHHHHCSEEEEEEEETTTEEEECCCEEHHH
T ss_pred cCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEeCCcceEeecCCHHHHHh
Confidence 9999999998876643 34899999999999986 5999999986 78888899988764
|
| >2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A* | Back alignment and structure |
|---|
Probab=99.98 E-value=1e-32 Score=307.39 Aligned_cols=183 Identities=20% Similarity=0.348 Sum_probs=158.9
Q ss_pred EEEEEEEEEcCCCCceeeCCCCCCHHHHHHHHhhcccCCCceEEEcCeeCCCCChHHHhhcCeeeccccccccccchhcc
Q 037346 949 NIRHLQVRYAPNLPLVLRGRTGSGKSTLIQTLFRIVESTAGHILIDGKDISLIGLHDLRTRLSIIPQDPTMFEGTTRSNL 1028 (1156)
Q Consensus 949 ~~~~Vsf~Y~~~~~~vL~G~SGsGKSTL~~lL~rl~~p~~G~I~idG~di~~i~~~~LR~~i~~VpQdp~LF~gTIr~Nl 1028 (1156)
.++||+|..++++.++|.||||||||||+++|+|+++|++|+|.+|| +|+||||+|.+|.+|++||+
T Consensus 53 vl~~isl~i~~Ge~~~i~G~NGsGKSTLlk~l~Gl~~p~~G~I~~~g-------------~i~~v~Q~~~l~~~tv~enl 119 (290)
T 2bbs_A 53 VLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSG-------------RISFCSQNSWIMPGTIKENI 119 (290)
T ss_dssp SEEEEEEEECTTCEEEEEESTTSSHHHHHHHHTTSSCEEEEEEECCS-------------CEEEECSSCCCCSSBHHHHH
T ss_pred EEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECC-------------EEEEEeCCCccCcccHHHHh
Confidence 58888999889998899999999999999999999999999999998 49999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHcCCChHHHhhcCCccc----------c--------ccccccCCCEEEEecCCcCCCHHHHHHH
Q 037346 1029 DPLEEHADEQIWEALDKCQLGDEVRKKKGKLDS----------Q--------GRVLLKKSKVLVLDEATASVDTATDNQI 1090 (1156)
Q Consensus 1029 ~~~~~~~deei~~al~~~~l~~~i~~lp~gl~s----------~--------ARALLr~~~ILiLDEaTS~LD~~te~~I 1090 (1156)
. +....+..+.++++.+++.+.+..+|.++++ + ||||+++|++||||||||+||+.+...+
T Consensus 120 ~-~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~LSgGq~QRv~lAraL~~~p~lllLDEPts~LD~~~~~~i 198 (290)
T 2bbs_A 120 I-GVSYDEYRYRSVIKACQLEEDISKFAEKDNIVLGEGGITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEI 198 (290)
T ss_dssp H-TTCCCHHHHHHHHHHTTCHHHHHTSTTGGGCBC----CCCCHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHH
T ss_pred h-CcccchHHHHHHHHHhChHHHHHhccccccchhcCccCcCCHHHHHHHHHHHHHHCCCCEEEEECCcccCCHHHHHHH
Confidence 7 4333455677788889998888887755431 1 8999999999999999999999999999
Q ss_pred HHHH-HHhcCCceEEEeecCcccccccCEEEEEeCcEEeeecChhHHhcCCCChHHH
Q 037346 1091 QQTL-RQHFSDCTVVTIAHRITSVLDSAMVLLLNHGLIKEYDSPTKLLENKSSSFAQ 1146 (1156)
Q Consensus 1091 ~~~l-~~~~~~~TvI~IaHrl~ti~~~D~I~Vl~~G~IvE~G~~~eLl~~~~g~f~~ 1146 (1156)
.+.+ ++..+++|||+|||+++.+..||+|++|++|++++.|+|+++++. ...|.+
T Consensus 199 ~~~ll~~~~~~~tviivtHd~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~-~~~~~~ 254 (290)
T 2bbs_A 199 FESCVCKLMANKTRILVTSKMEHLKKADKILILHEGSSYFYGTFSELQNL-RPDFSS 254 (290)
T ss_dssp HHHCCCCCTTTSEEEEECCCHHHHHHSSEEEEEETTEEEEEECHHHHHHH-CHHHHH
T ss_pred HHHHHHHhhCCCEEEEEecCHHHHHcCCEEEEEECCeEEEeCCHHHHhhh-cHHHHH
Confidence 9874 455568999999999999888999999999999999999999863 334443
|
| >3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus} | Back alignment and structure |
|---|
Probab=99.97 E-value=4.5e-32 Score=327.26 Aligned_cols=197 Identities=20% Similarity=0.211 Sum_probs=162.5
Q ss_pred ccEEEeeeEEEeCCCCCCCccccceEEeeCCeEEEEEcCCCCChHHHHHHHhCCCCCCCcEEEEcC-eEEEEecCCcC-C
Q 037346 356 TAIEIIDGSFSWDFSSPNPTLRNINLKVFHGMRVAVCGTVGSGKSSCLSCILGGVPKESGIIRLCG-TKAYVAQSPWI-Q 433 (1156)
Q Consensus 356 ~~i~~~~~~f~~~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKSTll~~i~g~~~~~~G~i~~~g-~~~~v~Q~~~~-~ 433 (1156)
..++++|+++.|.. ..|++.||+|++||+++|+||||||||||+++|+|+++|++|+|.+++ .++|+||++.. +
T Consensus 268 ~~l~~~~l~~~~~~----~~l~~~~~~i~~Gei~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~~~~i~~~~q~~~~~~ 343 (538)
T 3ozx_A 268 TKMKWTKIIKKLGD----FQLVVDNGEAKEGEIIGILGPNGIGKTTFARILVGEITADEGSVTPEKQILSYKPQRIFPNY 343 (538)
T ss_dssp EEEEECCEEEEETT----EEEEECCEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCSBCCEESSCCCEEEECSSCCCCC
T ss_pred ceEEEcceEEEECC----EEEEeccceECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCeeeEeechhccccc
Confidence 46899999999952 568888999999999999999999999999999999999999999887 58999999764 4
Q ss_pred CccHHHHhhcCCC----CCHHHHHHHHHHhCCchhhhhCCCCCccccccCCCCCCHHHHHHHHHHHhhccCCCeeeeeCC
Q 037346 434 SGKIEENILFGKE----MDRERYERVLEACSLKKDLEVLPFGDQTIIGERGINLSGGQKQRIQIARPLYQDADIFLLDDP 509 (1156)
Q Consensus 434 ~~ti~eni~~~~~----~~~~~~~~~~~~~~l~~~~~~~~~g~~t~v~~~g~~LSgGqkqRi~lAral~~~~~illlDep 509 (1156)
..||+||+.+... ......+++++.+++.+. ..+...+|||||||||+|||||+.+|++||||||
T Consensus 344 ~~tv~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~~-----------~~~~~~~LSGGq~QRv~iAraL~~~p~lLlLDEP 412 (538)
T 3ozx_A 344 DGTVQQYLENASKDALSTSSWFFEEVTKRLNLHRL-----------LESNVNDLSGGELQKLYIAATLAKEADLYVLDQP 412 (538)
T ss_dssp SSBHHHHHHHHCSSTTCTTSHHHHHTTTTTTGGGC-----------TTSBGGGCCHHHHHHHHHHHHHHSCCSEEEEEST
T ss_pred CCCHHHHHHHhhhhccchhHHHHHHHHHHcCCHHH-----------hcCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCC
Confidence 6799999976321 122344555555555432 2355678999999999999999999999999999
Q ss_pred CCCcCHHHHHHHHHHHHh---cCCCEEEEEccCCCcccc-CCEEEEEeC--CeEEEccChHHHH
Q 037346 510 FSPVDDHTGAHLFKFCWV---SSSKTVIYATHQVEFLPA-ADLILVIKD--GKITQAGKYSDIL 567 (1156)
Q Consensus 510 ~s~lD~~~~~~i~~~~~~---~~~~tvi~vtH~~~~~~~-~d~i~~l~~--G~i~~~g~~~~l~ 567 (1156)
|++||+.++..+.+.+.. ..|+|+|+||||++.+.. ||+|++|++ |.+...+++.++.
T Consensus 413 T~gLD~~~~~~i~~~l~~l~~~~g~tvi~vsHdl~~~~~~aDri~vl~~~~~~~~~~~~~~~~~ 476 (538)
T 3ozx_A 413 SSYLDVEERYIVAKAIKRVTRERKAVTFIIDHDLSIHDYIADRIIVFKGEPEKAGLATSPVTLK 476 (538)
T ss_dssp TTTCCHHHHHHHHHHHHHHHHHTTCEEEEECSCHHHHHHHCSEEEEEEEETTTEEEECCCEEHH
T ss_pred ccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEeCCcceeccCCChHHHH
Confidence 999999999988876643 358999999999999864 999999986 5666667766554
|
| >2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A | Back alignment and structure |
|---|
Probab=99.97 E-value=6.1e-32 Score=339.64 Aligned_cols=195 Identities=25% Similarity=0.368 Sum_probs=153.5
Q ss_pred cEEEeeeEEEeCCCCCCCccccceEEeeCCeEEEEEcCCCCChHHHHHHHhCCCCCCCcEEEEcC--eEEEEecCCcC--
Q 037346 357 AIEIIDGSFSWDFSSPNPTLRNINLKVFHGMRVAVCGTVGSGKSSCLSCILGGVPKESGIIRLCG--TKAYVAQSPWI-- 432 (1156)
Q Consensus 357 ~i~~~~~~f~~~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKSTll~~i~g~~~~~~G~i~~~g--~~~~v~Q~~~~-- 432 (1156)
.++++|++|+|+. .++++|+|+||+|++|++++|+||||||||||+++|+|+++|++|+|.++| +++|++|++..
T Consensus 671 mL~v~nLs~~Y~g-~~~~iL~dVSl~I~~GeivaIiGpNGSGKSTLLklLaGll~P~sG~I~~~~~~~I~yv~Q~~~~~l 749 (986)
T 2iw3_A 671 IVKVTNMEFQYPG-TSKPQITDINFQCSLSSRIAVIGPNGAGKSTLINVLTGELLPTSGEVYTHENCRIAYIKQHAFAHI 749 (986)
T ss_dssp EEEEEEEEECCTT-CSSCSEEEEEEEEETTCEEEECSCCCHHHHHHHHHHTTSSCCSEEEEEECTTCCEEEECHHHHHHG
T ss_pred eEEEEeeEEEeCC-CCceeeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEEcCccceEeeccchhhhh
Confidence 5999999999963 235799999999999999999999999999999999999999999999987 58999998631
Q ss_pred ---CCccHHHHh------------------------------------------------------------------hc
Q 037346 433 ---QSGKIEENI------------------------------------------------------------------LF 443 (1156)
Q Consensus 433 ---~~~ti~eni------------------------------------------------------------------~~ 443 (1156)
.+.|+++++ .+
T Consensus 750 ~~~~~~t~~e~i~~~~q~g~d~~~~~~~~~~l~~ed~~~~~~~~~~~g~~r~~~~i~~r~~~~~~~~~e~~~sv~ENi~l 829 (986)
T 2iw3_A 750 ESHLDKTPSEYIQWRFQTGEDRETMDRANRQINENDAEAMNKIFKIEGTPRRIAGIHSRRKFKNTYEYECSFLLGENIGM 829 (986)
T ss_dssp GGCTTSCHHHHHHHHTTTSSCTTTTTTTSCCCCSSCSSGGGCCEEETTEEEEEEEEEEEEEETTEEEEEEEEEEEESTTS
T ss_pred hcccccCHHHHHHHHhhccchhhhhhhhhhccchhhhhhhhcccccccchhhhhhhhhhhhhcccchhhhhhhhhhhhhc
Confidence 122444433 32
Q ss_pred CC------------------------------------------CCCHHHHHHHHHHhCCchhhhhCCCCCccccccCCC
Q 037346 444 GK------------------------------------------EMDRERYERVLEACSLKKDLEVLPFGDQTIIGERGI 481 (1156)
Q Consensus 444 ~~------------------------------------------~~~~~~~~~~~~~~~l~~~~~~~~~g~~t~v~~~g~ 481 (1156)
+. +...++.+++++.++|...+. ....+.
T Consensus 830 ~~~~~~~lt~~en~~~~~~~l~~~~~~~v~~~d~~~~~~~g~~~~~~~~~i~~~Le~lGL~~~~~---------~~~~~~ 900 (986)
T 2iw3_A 830 KSERWVPMMSVDNAWIPRGELVESHSKMVAEVDMKEALASGQFRPLTRKEIEEHCSMLGLDPEIV---------SHSRIR 900 (986)
T ss_dssp TTCEEEECCGGGCEEEEGGGTHHHHHHHHHHHHHHHHHHTTCCCCCCHHHHHHHHHHTTCCHHHH---------HHSCGG
T ss_pred ccccccccchhhhhhhhhHHHhhhHhhhhhhhhhhhhhhhcccchhHHHHHHHHHHHcCCCchhh---------cCCCcc
Confidence 21 011234445555555543220 123457
Q ss_pred CCCHHHHHHHHHHHhhccCCCeeeeeCCCCCcCHHHHHHHHHHHHhcCCCEEEEEccCCCccc-cCCEEEEEeCCeEEEc
Q 037346 482 NLSGGQKQRIQIARPLYQDADIFLLDDPFSPVDDHTGAHLFKFCWVSSSKTVIYATHQVEFLP-AADLILVIKDGKITQA 560 (1156)
Q Consensus 482 ~LSgGqkqRi~lAral~~~~~illlDep~s~lD~~~~~~i~~~~~~~~~~tvi~vtH~~~~~~-~~d~i~~l~~G~i~~~ 560 (1156)
+|||||||||+|||||+.+|++|||||||++||+.+...+.+.+... +.|||+|||+++++. .||+|++|++|+++..
T Consensus 901 ~LSGGQkQRVaLArAL~~~P~LLLLDEPT~gLD~~s~~~L~~~L~~~-g~tVIiISHD~e~v~~l~DrVivL~~G~Iv~~ 979 (986)
T 2iw3_A 901 GLSGGQKVKLVLAAGTWQRPHLIVLDEPTNYLDRDSLGALSKALKEF-EGGVIIITHSAEFTKNLTEEVWAVKDGRMTPS 979 (986)
T ss_dssp GCCHHHHHHHHHHHHHTTCCSEEEEECGGGTCCHHHHHHHHHHHHSC-SSEEEEECSCHHHHTTTCCEEECCBTTBCCC-
T ss_pred ccCHHHHHHHHHHHHHHhCCCEEEEECCccCCCHHHHHHHHHHHHHh-CCEEEEEECCHHHHHHhCCEEEEEECCEEEEe
Confidence 89999999999999999999999999999999999998887765433 679999999999986 5999999999999876
Q ss_pred cC
Q 037346 561 GK 562 (1156)
Q Consensus 561 g~ 562 (1156)
|+
T Consensus 980 G~ 981 (986)
T 2iw3_A 980 GH 981 (986)
T ss_dssp --
T ss_pred CC
Confidence 64
|
| >2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae} | Back alignment and structure |
|---|
Probab=99.97 E-value=4.9e-32 Score=296.81 Aligned_cols=177 Identities=22% Similarity=0.257 Sum_probs=155.2
Q ss_pred EEEEEEEEEEcCCCCceeeCCCCCCHHHHHHHHhhcccCCCceEEEcCeeCCCCChHHHhhcCeeeccccccc-cccchh
Q 037346 948 VNIRHLQVRYAPNLPLVLRGRTGSGKSTLIQTLFRIVESTAGHILIDGKDISLIGLHDLRTRLSIIPQDPTMF-EGTTRS 1026 (1156)
Q Consensus 948 I~~~~Vsf~Y~~~~~~vL~G~SGsGKSTL~~lL~rl~~p~~G~I~idG~di~~i~~~~LR~~i~~VpQdp~LF-~gTIr~ 1026 (1156)
..++||||..++++.++|.||||||||||+++|+|+++|++|+|. +|++++||||+|.+| ..|++|
T Consensus 19 ~vl~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I~-------------~~~~i~~v~q~~~~~~~~tv~e 85 (253)
T 2nq2_C 19 FLFQQLNFDLNKGDILAVLGQNGCGKSTLLDLLLGIHRPIQGKIE-------------VYQSIGFVPQFFSSPFAYSVLD 85 (253)
T ss_dssp EEEEEEEEEEETTCEEEEECCSSSSHHHHHHHHTTSSCCSEEEEE-------------ECSCEEEECSCCCCSSCCBHHH
T ss_pred eEEEEEEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEE-------------EeccEEEEcCCCccCCCCCHHH
Confidence 468888888888888889999999999999999999999999998 367899999999887 679999
Q ss_pred ccCCCCC--------CC---HHHHHHHHHHcCCChHHHhhcCCcccc-------ccccccCCCEEEEecCCcCCCHHHHH
Q 037346 1027 NLDPLEE--------HA---DEQIWEALDKCQLGDEVRKKKGKLDSQ-------GRVLLKKSKVLVLDEATASVDTATDN 1088 (1156)
Q Consensus 1027 Nl~~~~~--------~~---deei~~al~~~~l~~~i~~lp~gl~s~-------ARALLr~~~ILiLDEaTS~LD~~te~ 1088 (1156)
|+.++.. .. ++++.++++.+++.++....|..|..+ ||||+++|+|||||||||+||+.+.+
T Consensus 86 nl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~lAraL~~~p~lllLDEPts~LD~~~~~ 165 (253)
T 2nq2_C 86 IVLMGRSTHINTFAKPKSHDYQVAMQALDYLNLTHLAKREFTSLSGGQRQLILIARAIASECKLILLDEPTSALDLANQD 165 (253)
T ss_dssp HHHGGGGGGSCTTCCCCHHHHHHHHHHHHHTTCGGGTTSBGGGSCHHHHHHHHHHHHHHTTCSEEEESSSSTTSCHHHHH
T ss_pred HHHHhhhhhcccccCCCHHHHHHHHHHHHHcCChHHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHH
Confidence 9965320 12 356899999999998887777766654 89999999999999999999999999
Q ss_pred HHHHHHHHhcC--CceEEEeecCccccc-ccCEEEEEeCcEEeeecChhHHhc
Q 037346 1089 QIQQTLRQHFS--DCTVVTIAHRITSVL-DSAMVLLLNHGLIKEYDSPTKLLE 1138 (1156)
Q Consensus 1089 ~I~~~l~~~~~--~~TvI~IaHrl~ti~-~~D~I~Vl~~G~IvE~G~~~eLl~ 1138 (1156)
.+.+.|++..+ ++|||+|||+++.+. .||+|++|++|+ ++.|+++++++
T Consensus 166 ~l~~~l~~l~~~~g~tvi~vtHd~~~~~~~~d~v~~l~~G~-~~~g~~~~~~~ 217 (253)
T 2nq2_C 166 IVLSLLIDLAQSQNMTVVFTTHQPNQVVAIANKTLLLNKQN-FKFGETRNILT 217 (253)
T ss_dssp HHHHHHHHHHHTSCCEEEEEESCHHHHHHHCSEEEEEETTE-EEEEEHHHHCC
T ss_pred HHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEeCCe-EecCCHHHHhC
Confidence 99999988753 789999999999884 699999999999 99999999875
|
| >3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.97 E-value=9.5e-32 Score=327.68 Aligned_cols=196 Identities=20% Similarity=0.244 Sum_probs=164.0
Q ss_pred eeeEEEeCCCCCCCccccceEEeeCC-----eEEEEEcCCCCChHHHHHHHhCCCCCCCcEEEEcCeEEEEecCCc-CCC
Q 037346 361 IDGSFSWDFSSPNPTLRNINLKVFHG-----MRVAVCGTVGSGKSSCLSCILGGVPKESGIIRLCGTKAYVAQSPW-IQS 434 (1156)
Q Consensus 361 ~~~~f~~~~~~~~~~l~~i~l~i~~g-----~~~~ivG~~GsGKSTll~~i~g~~~~~~G~i~~~g~~~~v~Q~~~-~~~ 434 (1156)
++++|+|+. ...+++|+||++++| |+++|+||||||||||+++|+|+++|++|+..-.-.++|+||++. .+.
T Consensus 350 ~~~~~~y~~--~~~~l~~vsl~v~~G~~~~GEiv~iiG~NGsGKSTLlk~l~Gl~~p~~G~~~~~~~i~~~~q~~~~~~~ 427 (608)
T 3j16_B 350 ASRAFSYPS--LKKTQGDFVLNVEEGEFSDSEILVMMGENGTGKTTLIKLLAGALKPDEGQDIPKLNVSMKPQKIAPKFP 427 (608)
T ss_dssp SSSCCEECC--EEEECSSCEEEECCEECCTTCEEEEESCTTSSHHHHHHHHHTSSCCSBCCCCCSCCEEEECSSCCCCCC
T ss_pred cceeEEecC--cccccCceEEEEecCccccceEEEEECCCCCcHHHHHHHHhcCCCCCCCcCccCCcEEEecccccccCC
Confidence 677888863 235799999999999 789999999999999999999999999998543446899999975 457
Q ss_pred ccHHHHhhcC---CCCCHHHHHHHHHHhCCchhhhhCCCCCccccccCCCCCCHHHHHHHHHHHhhccCCCeeeeeCCCC
Q 037346 435 GKIEENILFG---KEMDRERYERVLEACSLKKDLEVLPFGDQTIIGERGINLSGGQKQRIQIARPLYQDADIFLLDDPFS 511 (1156)
Q Consensus 435 ~ti~eni~~~---~~~~~~~~~~~~~~~~l~~~~~~~~~g~~t~v~~~g~~LSgGqkqRi~lAral~~~~~illlDep~s 511 (1156)
.|+++|+... ...+.+..+++++..++.+.. .....+|||||||||+|||||..+|++|||||||+
T Consensus 428 ~tv~e~~~~~~~~~~~~~~~~~~~l~~l~l~~~~-----------~~~~~~LSGGqkQRv~iAraL~~~p~lLlLDEPT~ 496 (608)
T 3j16_B 428 GTVRQLFFKKIRGQFLNPQFQTDVVKPLRIDDII-----------DQEVQHLSGGELQRVAIVLALGIPADIYLIDEPSA 496 (608)
T ss_dssp SBHHHHHHHHCSSTTTSHHHHHHTHHHHTSTTTS-----------SSBSSSCCHHHHHHHHHHHHTTSCCSEEEECCTTT
T ss_pred ccHHHHHHHHhhcccccHHHHHHHHHHcCChhhh-----------cCChhhCCHHHHHHHHHHHHHHhCCCEEEEECCCC
Confidence 7999998642 223455667788888775433 34557899999999999999999999999999999
Q ss_pred CcCHHHHHHHHHHHHh---cCCCEEEEEccCCCccc-cCCEEEEEeC--CeEEEccChHHHHhc
Q 037346 512 PVDDHTGAHLFKFCWV---SSSKTVIYATHQVEFLP-AADLILVIKD--GKITQAGKYSDILNS 569 (1156)
Q Consensus 512 ~lD~~~~~~i~~~~~~---~~~~tvi~vtH~~~~~~-~~d~i~~l~~--G~i~~~g~~~~l~~~ 569 (1156)
+||+.++..+.+.+.. ..|+|+|+||||++.+. .||+|++|++ |+++..|+++++++.
T Consensus 497 gLD~~~~~~i~~ll~~l~~~~g~tviivtHdl~~~~~~aDrvivl~~~~g~~~~~g~p~~~~~~ 560 (608)
T 3j16_B 497 YLDSEQRIICSKVIRRFILHNKKTAFIVEHDFIMATYLADKVIVFEGIPSKNAHARAPESLLTG 560 (608)
T ss_dssp TCCHHHHHHHHHHHHHHHHHHTCEEEEECSCHHHHHHHCSEEEECEEETTTEEECCCCEEHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEeCCCCeEEecCChHHHhhh
Confidence 9999999988776543 35899999999999986 4999999986 899999999998864
|
| >1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=99.97 E-value=2.7e-31 Score=282.72 Aligned_cols=175 Identities=18% Similarity=0.321 Sum_probs=147.5
Q ss_pred EEEEEEEEEEcCCCCceeeCCCCCCHHHHHHHHhhcccCCCceEEEcCeeCCCCChHHHhhcCeeeccccccccc-cchh
Q 037346 948 VNIRHLQVRYAPNLPLVLRGRTGSGKSTLIQTLFRIVESTAGHILIDGKDISLIGLHDLRTRLSIIPQDPTMFEG-TTRS 1026 (1156)
Q Consensus 948 I~~~~Vsf~Y~~~~~~vL~G~SGsGKSTL~~lL~rl~~p~~G~I~idG~di~~i~~~~LR~~i~~VpQdp~LF~g-TIr~ 1026 (1156)
..++||||...+++.++|.||||||||||+++|+|+++|++|+|.++|.++. .+|+.++||||+|.+|.+ |++|
T Consensus 23 ~il~~vsl~i~~Ge~~~iiG~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~~~-----~~~~~i~~v~q~~~~~~~~tv~e 97 (214)
T 1sgw_A 23 PVLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKPLKGEIIYNGVPIT-----KVKGKIFFLPEEIIVPRKISVED 97 (214)
T ss_dssp EEEEEEEEEEETTCCEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEEGG-----GGGGGEEEECSSCCCCTTSBHHH
T ss_pred eEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEhh-----hhcCcEEEEeCCCcCCCCCCHHH
Confidence 4577788887888888899999999999999999999999999999999986 368899999999999987 9999
Q ss_pred ccCCC----C-CCCHHHHHHHHHHcCCChHHHhhcCCcccc-------ccccccCCCEEEEecCCcCCCHHHHHHHHHHH
Q 037346 1027 NLDPL----E-EHADEQIWEALDKCQLGDEVRKKKGKLDSQ-------GRVLLKKSKVLVLDEATASVDTATDNQIQQTL 1094 (1156)
Q Consensus 1027 Nl~~~----~-~~~deei~~al~~~~l~~~i~~lp~gl~s~-------ARALLr~~~ILiLDEaTS~LD~~te~~I~~~l 1094 (1156)
|+.++ . ...++++.++++.+++.+. ...+..|..+ ||||+++|++||||||||+||+++...+.+.|
T Consensus 98 nl~~~~~~~~~~~~~~~~~~~l~~~gl~~~-~~~~~~LSgGqkqrv~laraL~~~p~lllLDEPts~LD~~~~~~l~~~l 176 (214)
T 1sgw_A 98 YLKAVASLYGVKVNKNEIMDALESVEVLDL-KKKLGELSQGTIRRVQLASTLLVNAEIYVLDDPVVAIDEDSKHKVLKSI 176 (214)
T ss_dssp HHHHHHHHTTCCCCHHHHHHHHHHTTCCCT-TSBGGGSCHHHHHHHHHHHHTTSCCSEEEEESTTTTSCTTTHHHHHHHH
T ss_pred HHHHHHHhcCCchHHHHHHHHHHHcCCCcC-CCChhhCCHHHHHHHHHHHHHHhCCCEEEEECCCcCCCHHHHHHHHHHH
Confidence 98642 1 2236789999999999887 6666666544 89999999999999999999999999999999
Q ss_pred HHhc-CCceEEEeecCcccccccCEEEEEeCcEEe
Q 037346 1095 RQHF-SDCTVVTIAHRITSVLDSAMVLLLNHGLIK 1128 (1156)
Q Consensus 1095 ~~~~-~~~TvI~IaHrl~ti~~~D~I~Vl~~G~Iv 1128 (1156)
++.. +++|||++||+++.+..++..+|+.+|+|-
T Consensus 177 ~~~~~~g~tiiivtHd~~~~~~~~d~v~~~~~~~~ 211 (214)
T 1sgw_A 177 LEILKEKGIVIISSREELSYCDVNENLHKYSTKID 211 (214)
T ss_dssp HHHHHHHSEEEEEESSCCTTSSEEEEGGGGBC---
T ss_pred HHHHhCCCEEEEEeCCHHHHHHhCCEEEEeCCccc
Confidence 8865 478999999999999885555556667763
|
| >2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=3.1e-34 Score=319.62 Aligned_cols=222 Identities=10% Similarity=0.028 Sum_probs=176.7
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCccccccCCCCCCCccEEEeeeEEEeCCCCCC
Q 037346 294 ESGMILSALTTFKILQEPIYYLPESISMMIQAKVPLDRIASFLCLEGLQTDVLEKMPRGNSDTAIEIIDGSFSWDFSSPN 373 (1156)
Q Consensus 294 t~~~~ft~l~~~~~l~~pl~~l~~~~~~~~~a~~s~~Ri~~fl~~~~~~~~~~~~~~~~~~~~~i~~~~~~f~~~~~~~~ 373 (1156)
+-+.+.+++.+.+. ..|+..+...+..+.++.++..||.++++.+...... . .+.....+.|+++|++|.|+ .
T Consensus 41 ~~~n~~afl~~~~q-~~~v~~~~~~~~~~~~a~~a~~ri~~~l~~~~~~~~~-~-~~~~~~~~~i~~~~vs~~y~----~ 113 (305)
T 2v9p_A 41 SDSNARAFLATNSQ-AKHVKDCATMVRHYLRAETQALSMPAYIKARCKLATG-E-GSWKSILTFFNYQNIELITF----I 113 (305)
T ss_dssp TCHHHHHHTTCTTH-HHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHCCS-S-CCTHHHHHHHHHTTCCHHHH----H
T ss_pred ccHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccCC-C-CcccccCCeEEEEEEEEEcC----h
Confidence 34566777766555 4899999999999999999999999999764211100 0 00000113488999999996 4
Q ss_pred CccccceEEeeCCeEEEEEcCCCCChHHHHHHHhCCCCCCCcEEEEcCeEEEEecCCcCCCccHHH-HhhcCCCCCHHHH
Q 037346 374 PTLRNINLKVFHGMRVAVCGTVGSGKSSCLSCILGGVPKESGIIRLCGTKAYVAQSPWIQSGKIEE-NILFGKEMDRERY 452 (1156)
Q Consensus 374 ~~l~~i~l~i~~g~~~~ivG~~GsGKSTll~~i~g~~~~~~G~i~~~g~~~~v~Q~~~~~~~ti~e-ni~~~~~~~~~~~ 452 (1156)
++|+|+||+|++|++++|+||||||||||+++|+|++ +|+| ++|++|+|++|.+|++| ||.++...++ ..
T Consensus 114 ~vL~~vsl~i~~Ge~vaIvGpsGsGKSTLl~lL~gl~---~G~I-----~~~v~q~~~lf~~ti~~~ni~~~~~~~~-~~ 184 (305)
T 2v9p_A 114 NALKLWLKGIPKKNCLAFIGPPNTGKSMLCNSLIHFL---GGSV-----LSFANHKSHFWLASLADTRAALVDDATH-AC 184 (305)
T ss_dssp HHHHHHHHTCTTCSEEEEECSSSSSHHHHHHHHHHHH---TCEE-----ECGGGTTSGGGGGGGTTCSCEEEEEECH-HH
T ss_pred hhhccceEEecCCCEEEEECCCCCcHHHHHHHHhhhc---CceE-----EEEecCccccccccHHHHhhccCccccH-HH
Confidence 6999999999999999999999999999999999998 7888 46889999999999998 9999754432 22
Q ss_pred HHHHHHhCCchhhhh-CCCCCccccccCCCCCCHHHHHHHHHHHhhccCCCeeeeeCCCCCcCHHHHHHHHHHHHhcCCC
Q 037346 453 ERVLEACSLKKDLEV-LPFGDQTIIGERGINLSGGQKQRIQIARPLYQDADIFLLDDPFSPVDDHTGAHLFKFCWVSSSK 531 (1156)
Q Consensus 453 ~~~~~~~~l~~~~~~-~~~g~~t~v~~~g~~LSgGqkqRi~lAral~~~~~illlDep~s~lD~~~~~~i~~~~~~~~~~ 531 (1156)
. +.++. +|.|++ |.+|||||||| |||++++|+||| ||+||+.+++.+..
T Consensus 185 ~---------~~i~~~L~~gld------g~~LSgGqkQR---ARAll~~p~iLl----Ts~LD~~~~~~i~~-------- 234 (305)
T 2v9p_A 185 W---------RYFDTYLRNALD------GYPVSIDRKHK---AAVQIKAPPLLV----TSNIDVQAEDRYLY-------- 234 (305)
T ss_dssp H---------HHHHHTTTGGGG------TCCEECCCSSC---CCCEECCCCEEE----EESSCSTTCGGGGG--------
T ss_pred H---------HHHHHHhHccCC------ccCcCHHHHHH---HHHHhCCCCEEE----ECCCCHHHHHHHHH--------
Confidence 2 23343 566654 67999999999 999999999999 99999999877641
Q ss_pred EEEEEccCCCccccCCEEEEEeCCeEEEccChHHH
Q 037346 532 TVIYATHQVEFLPAADLILVIKDGKITQAGKYSDI 566 (1156)
Q Consensus 532 tvi~vtH~~~~~~~~d~i~~l~~G~i~~~g~~~~l 566 (1156)
+||+++.+..||+| +|++|++++.|+++++
T Consensus 235 ----ltH~~~~~~~aD~i-vl~~G~iv~~g~~~el 264 (305)
T 2v9p_A 235 ----LHSRVQTFRFEQPC-TDESGEQPFNITDADW 264 (305)
T ss_dssp ----GTTTEEEEECCCCC-CCC---CCCCCCHHHH
T ss_pred ----HhCCHHHHHhCCEE-EEeCCEEEEeCCHHHH
Confidence 29999999999999 9999999999999998
|
| >3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus} | Back alignment and structure |
|---|
Probab=99.95 E-value=2.3e-28 Score=305.99 Aligned_cols=128 Identities=22% Similarity=0.379 Sum_probs=101.1
Q ss_pred ccHHHHhhcCCCCC-HHHHHHHHHHhCCchhhhhCCCCCccccccCCCCCCHHHHHHHHHHHhhccCC---CeeeeeCCC
Q 037346 435 GKIEENILFGKEMD-RERYERVLEACSLKKDLEVLPFGDQTIIGERGINLSGGQKQRIQIARPLYQDA---DIFLLDDPF 510 (1156)
Q Consensus 435 ~ti~eni~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~g~~t~v~~~g~~LSgGqkqRi~lAral~~~~---~illlDep~ 510 (1156)
.|++||+.|..... .++..+.++..++.. ...++.+.+|||||||||+|||||+.+| ++|||||||
T Consensus 505 ltv~e~l~~~~~~~~~~~~~~~l~~~~l~~----------~~~~~~~~~LSgG~~qrv~iAraL~~~p~~p~llllDEPt 574 (670)
T 3ux8_A 505 MTVEDALDFFASIPKIKRKLETLYDVGLGY----------MKLGQPATTLSGGEAQRVKLAAELHRRSNGRTLYILDEPT 574 (670)
T ss_dssp SBHHHHHHHTTTCHHHHHHHHHHHHTTCTT----------SBTTCCGGGCCHHHHHHHHHHHHHHSCCCSCEEEEEESTT
T ss_pred CCHHHHHHHHHHhhhHHHHHHHHHHcCCch----------hhccCCchhCCHHHHHHHHHHHHHhhCCCCCcEEEEeCCC
Confidence 47888888765432 123334444444432 1234567899999999999999999887 599999999
Q ss_pred CCcCHHHHHHHHHHHHh--cCCCEEEEEccCCCccccCCEEEEE------eCCeEEEccChHHHHhcCcc
Q 037346 511 SPVDDHTGAHLFKFCWV--SSSKTVIYATHQVEFLPAADLILVI------KDGKITQAGKYSDILNSGTD 572 (1156)
Q Consensus 511 s~lD~~~~~~i~~~~~~--~~~~tvi~vtH~~~~~~~~d~i~~l------~~G~i~~~g~~~~l~~~~~~ 572 (1156)
++||+.+...+.+.+.. .+|+|+|+||||++.+..||+|++| ++|+|++.|+++++.+....
T Consensus 575 ~~LD~~~~~~i~~~l~~l~~~g~tvi~vtHd~~~~~~~d~i~~l~~~~g~~~G~i~~~g~~~~~~~~~~~ 644 (670)
T 3ux8_A 575 TGLHVDDIARLLDVLHRLVDNGDTVLVIEHNLDVIKTADYIIDLGPEGGDRGGQIVAVGTPEEVAEVKES 644 (670)
T ss_dssp TTCCHHHHHHHHHHHHHHHHTTCEEEEECCCHHHHTTCSEEEEEESSSGGGCCEEEEEECHHHHHTCTTC
T ss_pred CCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHhCCEEEEecCCcCCCCCEEEEecCHHHHHhCCcc
Confidence 99999999998876643 4589999999999988889999999 89999999999999765443
|
| >1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A* | Back alignment and structure |
|---|
Probab=99.94 E-value=7.3e-30 Score=310.50 Aligned_cols=155 Identities=13% Similarity=0.057 Sum_probs=106.0
Q ss_pred CCCccccceE-EeeCCeEEEEEcCCCCChHHHHHH--HhCCCCCCCcEEEEcCe------------EEEEecCCcCCCcc
Q 037346 372 PNPTLRNINL-KVFHGMRVAVCGTVGSGKSSCLSC--ILGGVPKESGIIRLCGT------------KAYVAQSPWIQSGK 436 (1156)
Q Consensus 372 ~~~~l~~i~l-~i~~g~~~~ivG~~GsGKSTll~~--i~g~~~~~~G~i~~~g~------------~~~v~Q~~~~~~~t 436 (1156)
+.++|+++++ .+++|++++|+||||||||||+++ +.|.++|.+|.|+++|. ++|++|++...
T Consensus 24 g~~~Ld~i~~G~i~~Ge~~~l~G~nGsGKSTL~~~~ll~Gl~~~~~g~i~v~g~~~~~~~~~~~~~~g~~~q~~~~~--- 100 (525)
T 1tf7_A 24 MIEGFDDISHGGLPIGRSTLVSGTSGTGKTLFSIQFLYNGIIEFDEPGVFVTFEETPQDIIKNARSFGWDLAKLVDE--- 100 (525)
T ss_dssp CCTTHHHHTTSSEETTSEEEEEESTTSSHHHHHHHHHHHHHHHHCCCEEEEESSSCHHHHHHHHGGGTCCHHHHHHT---
T ss_pred CchhHHHhcCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHHHHhCCCCEEEEEEeCCHHHHHHHHHHcCCChHHhhcc---
Confidence 4679999999 999999999999999999999999 67999999999999873 35555554311
Q ss_pred HHHHhhcCCCCCHHHHHHHHHHhCCchhhhhCCCCCccccccCCCCCCHHHHHHHHHHHhhc-cCCCeeeeeCCCCC---
Q 037346 437 IEENILFGKEMDRERYERVLEACSLKKDLEVLPFGDQTIIGERGINLSGGQKQRIQIARPLY-QDADIFLLDDPFSP--- 512 (1156)
Q Consensus 437 i~eni~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~t~v~~~g~~LSgGqkqRi~lAral~-~~~~illlDep~s~--- 512 (1156)
+|+.+....+.++..+++ ..+.-++ +.-.++++|. .+|++++|||||+.
T Consensus 101 --~~l~~~~~~~~~~~~~~l------------------------~~~~l~~-~~~~~~~~LS~g~~~~lilDe~t~~~~~ 153 (525)
T 1tf7_A 101 --GKLFILDASPDPEGQEVV------------------------GGFDLSA-LIERINYAIQKYRARRVSIDSVTSVFQQ 153 (525)
T ss_dssp --TSEEEEECCCCSSCCSCC------------------------SSHHHHH-HHHHHHHHHHHHTCSEEEEECSTTTSTT
T ss_pred --CcEEEEecCcccchhhhh------------------------cccCHHH-HHHHHHHHHHHcCCCEEEECCHHHHHHh
Confidence 111110000000000000 1111111 2333444442 46889999999985
Q ss_pred --cCHHHHHHHHHHHHh--cCCCEEEEEccCCCcc---------cc-CCEEEEEeCCe
Q 037346 513 --VDDHTGAHLFKFCWV--SSSKTVIYATHQVEFL---------PA-ADLILVIKDGK 556 (1156)
Q Consensus 513 --lD~~~~~~i~~~~~~--~~~~tvi~vtH~~~~~---------~~-~d~i~~l~~G~ 556 (1156)
+|+..++.+++.+.. ..|.|+|++||+++.+ .. ||+|++|++|+
T Consensus 154 ~~lD~~~~~~l~~ll~~l~~~g~tvl~itH~~~~~~~~~~~~i~~~laD~vi~L~~~~ 211 (525)
T 1tf7_A 154 YDASSVVRRELFRLVARLKQIGATTVMTTERIEEYGPIARYGVEEFVSDNVVILRNVL 211 (525)
T ss_dssp TCCHHHHHHHHHHHHHHHHHHTCEEEEEEECSSSSSCSSTTSCHHHHCSEEEEEEEEC
T ss_pred cCCHHHHHHHHHHHHHHHHHCCCEEEEEecCCCCccccccccceeeeeeEEEEEEEEc
Confidence 588888888775532 4589999999999875 34 99999999865
|
| >3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=99.94 E-value=5.7e-27 Score=294.98 Aligned_cols=129 Identities=25% Similarity=0.402 Sum_probs=102.0
Q ss_pred cHHHHhhcCCCCC-HHHHHHHHHHhCCchhhhhCCCCCccccccCCCCCCHHHHHHHHHHHhhccCC---CeeeeeCCCC
Q 037346 436 KIEENILFGKEMD-RERYERVLEACSLKKDLEVLPFGDQTIIGERGINLSGGQKQRIQIARPLYQDA---DIFLLDDPFS 511 (1156)
Q Consensus 436 ti~eni~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~g~~t~v~~~g~~LSgGqkqRi~lAral~~~~---~illlDep~s 511 (1156)
|+.|++.|..... ..+..++++.++|.. ..+|+.+.+|||||||||+|||||+++| ++|||||||+
T Consensus 768 tv~eal~f~~~~~~~~~~~~~L~~vGL~~----------~~lgq~~~~LSGGErQRV~LAraL~~~p~~p~LLILDEPTs 837 (916)
T 3pih_A 768 TVDEALEFFKNIPSIKRTLQVLHDVGLGY----------VKLGQPATTLSGGEAQRIKLASELRKRDTGRTLYILDEPTV 837 (916)
T ss_dssp BHHHHHHHTTTCHHHHHHHHHHHHTTGGG----------SBTTCCSTTCCHHHHHHHHHHHHHTSCCCSSEEEEEESTTT
T ss_pred CHHHHHHHHhcchhHHHHHHHHHHcCCch----------hhccCCccCCCHHHHHHHHHHHHHhhCCCCCCEEEEECCCC
Confidence 5555555443221 233445555555532 2357788999999999999999999875 7999999999
Q ss_pred CcCHHHHHHHHHHHHh--cCCCEEEEEccCCCccccCCEEEEE------eCCeEEEccChHHHHhcCcchH
Q 037346 512 PVDDHTGAHLFKFCWV--SSSKTVIYATHQVEFLPAADLILVI------KDGKITQAGKYSDILNSGTDFM 574 (1156)
Q Consensus 512 ~lD~~~~~~i~~~~~~--~~~~tvi~vtH~~~~~~~~d~i~~l------~~G~i~~~g~~~~l~~~~~~~~ 574 (1156)
+||+...+.+.+.+.. .+|+|||+|||+++.+..||+|++| ++|+|++.|+++++.+....|.
T Consensus 838 GLD~~~~~~L~~lL~~L~~~G~TVIvI~HdL~~i~~ADrIivLgp~gg~~~G~Iv~~Gtpeel~~~~~syt 908 (916)
T 3pih_A 838 GLHFEDVRKLVEVLHRLVDRGNTVIVIEHNLDVIKNADHIIDLGPEGGKEGGYIVATGTPEEIAKNPHSYT 908 (916)
T ss_dssp TCCHHHHHHHHHHHHHHHHTTCEEEEECCCHHHHTTCSEEEEEESSSGGGCCEEEEEESHHHHHSCTTCHH
T ss_pred CCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhCCEEEEecCCCCCCCCEEEEEcCHHHHHhCCchHH
Confidence 9999999998876643 4689999999999999889999999 8999999999999987655443
|
| >2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A* | Back alignment and structure |
|---|
Probab=99.93 E-value=2.1e-26 Score=287.59 Aligned_cols=95 Identities=25% Similarity=0.483 Sum_probs=85.1
Q ss_pred cccCCCCCCHHHHHHHHHHHhhccC---CCeeeeeCCCCCcCHHHHHHHHHHHHh--cCCCEEEEEccCCCccccCCEEE
Q 037346 476 IGERGINLSGGQKQRIQIARPLYQD---ADIFLLDDPFSPVDDHTGAHLFKFCWV--SSSKTVIYATHQVEFLPAADLIL 550 (1156)
Q Consensus 476 v~~~g~~LSgGqkqRi~lAral~~~---~~illlDep~s~lD~~~~~~i~~~~~~--~~~~tvi~vtH~~~~~~~~d~i~ 550 (1156)
+++...+|||||||||+|||+|.++ |++|||||||++||+...+.+.+.+.. .+|+|||+|||+++++..||+|+
T Consensus 724 l~~~~~~LSGGekQRv~LAraL~~~p~~p~lLILDEPTsGLD~~~~~~l~~lL~~L~~~G~tVIvisHdl~~i~~aDrii 803 (842)
T 2vf7_A 724 LGQPATELSGGEAQRIKLATELRRSGRGGTVYVLDEPTTGLHPADVERLQRQLVKLVDAGNTVIAVEHKMQVVAASDWVL 803 (842)
T ss_dssp TTCCGGGCCHHHHHHHHHHHTTSSCCSSCEEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECCCHHHHTTCSEEE
T ss_pred ccCCcccCCHHHHHHHHHHHHHHhCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEcCCHHHHHhCCEEE
Confidence 3567789999999999999999996 799999999999999999998876643 46899999999999997799999
Q ss_pred EE------eCCeEEEccChHHHHhcC
Q 037346 551 VI------KDGKITQAGKYSDILNSG 570 (1156)
Q Consensus 551 ~l------~~G~i~~~g~~~~l~~~~ 570 (1156)
+| ++|+|+..|+++++.+..
T Consensus 804 ~L~p~~g~~~G~Iv~~g~~~el~~~~ 829 (842)
T 2vf7_A 804 DIGPGAGEDGGRLVAQGTPAEVAQAA 829 (842)
T ss_dssp EECSSSGGGCCSEEEEECHHHHTTCT
T ss_pred EECCCCCCCCCEEEEEcCHHHHHhCc
Confidence 99 699999999999987643
|
| >2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.93 E-value=1.4e-29 Score=299.46 Aligned_cols=185 Identities=15% Similarity=0.079 Sum_probs=143.5
Q ss_pred EEEeeeEEEeCCCCCCCccccceEEeeCCeEEEEEcCCCCChHHHHHHHhCCCCCCCc-E-EEEcC----eEEEEecCCc
Q 037346 358 IEIIDGSFSWDFSSPNPTLRNINLKVFHGMRVAVCGTVGSGKSSCLSCILGGVPKESG-I-IRLCG----TKAYVAQSPW 431 (1156)
Q Consensus 358 i~~~~~~f~~~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKSTll~~i~g~~~~~~G-~-i~~~g----~~~~v~Q~~~ 431 (1156)
++++|++|+| .++||++++|++++|+||||||||||+++|+|+++|++| + |.++| .++|+||++.
T Consensus 119 i~~~nl~~~y---------~~vsl~i~~Ge~v~IvGpnGsGKSTLlr~L~Gl~~p~~G~~pI~vdg~~~~~i~~vpq~~~ 189 (460)
T 2npi_A 119 KYIYNLHFML---------EKIRMSNFEGPRVVIVGGSQTGKTSLSRTLCSYALKFNAYQPLYINLDPQQPIFTVPGCIS 189 (460)
T ss_dssp HHHHHHHHHH---------HHHHHHSSSCCCEEEEESTTSSHHHHHHHHHHTTHHHHCCCCEEEECCTTSCSSSCSSCCE
T ss_pred hhhhhhhehh---------hcCceEeCCCCEEEEECCCCCCHHHHHHHHhCcccccCCceeEEEcCCccCCeeeeccchh
Confidence 4555555555 379999999999999999999999999999999999999 9 99987 4789999984
Q ss_pred CC----CccHHHHhhcCCCC-----CHHHHHHHHHHhCCchhhhhCCCCCccccccCCCCCCHHHHHHHHHHHh--hccC
Q 037346 432 IQ----SGKIEENILFGKEM-----DRERYERVLEACSLKKDLEVLPFGDQTIIGERGINLSGGQKQRIQIARP--LYQD 500 (1156)
Q Consensus 432 ~~----~~ti~eni~~~~~~-----~~~~~~~~~~~~~l~~~~~~~~~g~~t~v~~~g~~LSgGqkqRi~lAra--l~~~ 500 (1156)
++ ..|++||+ |+... +.++..++++.+ |...... ..+||||||||++|||| |+.+
T Consensus 190 l~~~~~~~tv~eni-~~~~~~~~~~~~~~~~~ll~~~-----------gl~~~~~--~~~LSgGq~qrlalAra~rL~~~ 255 (460)
T 2npi_A 190 ATPISDILDAQLPT-WGQSLTSGATLLHNKQPMVKNF-----------GLERINE--NKDLYLECISQLGQVVGQRLHLD 255 (460)
T ss_dssp EEECCSCCCTTCTT-CSCBCBSSCCSSCCBCCEECCC-----------CSSSGGG--CHHHHHHHHHHHHHHHHHHHHHC
T ss_pred hcccccccchhhhh-cccccccCcchHHHHHHHHHHh-----------CCCcccc--hhhhhHHHHHHHHHHHHHHhccC
Confidence 32 35899999 76432 111111122222 2222222 56899999999999999 9999
Q ss_pred CCe----eeeeC-CCCCcCHHHHHHHHHHHHhcCCCEEEEEccCCC------ccc-cCCE-----EEEEe-CCeEEEccC
Q 037346 501 ADI----FLLDD-PFSPVDDHTGAHLFKFCWVSSSKTVIYATHQVE------FLP-AADL-----ILVIK-DGKITQAGK 562 (1156)
Q Consensus 501 ~~i----lllDe-p~s~lD~~~~~~i~~~~~~~~~~tvi~vtH~~~------~~~-~~d~-----i~~l~-~G~i~~~g~ 562 (1156)
|++ +|||| ||++||+. .+.+. .++...++|+|+|||+.+ .+. .||+ |++|+ +|+++ .|+
T Consensus 256 p~i~~sGLlLDEpPts~LD~~-~~~l~-~l~~~~~~tviiVth~~~~~l~~~~~~~~~dr~~~~~vi~l~k~G~iv-~g~ 332 (460)
T 2npi_A 256 PQVRRSGCIVDTPSISQLDEN-LAELH-HIIEKLNVNIMLVLCSETDPLWEKVKKTFGPELGNNNIFFIPKLDGVS-AVD 332 (460)
T ss_dssp HHHHHSCEEEECCCGGGSCSS-CHHHH-HHHHHTTCCEEEEECCSSCTHHHHHHHHHHHHHCGGGEEEECCCTTCC-CCC
T ss_pred cccCcceEEEeCCcccccChh-HHHHH-HHHHHhCCCEEEEEccCchhhhHHHHHHhcccccCCEEEEEeCCCcEE-ECC
Confidence 999 99999 99999999 44443 344445789999999988 443 5999 99999 99999 899
Q ss_pred hHHHHh
Q 037346 563 YSDILN 568 (1156)
Q Consensus 563 ~~~l~~ 568 (1156)
++++.+
T Consensus 333 ~~~~~~ 338 (460)
T 2npi_A 333 DVYKRS 338 (460)
T ss_dssp HHHHHH
T ss_pred HHHHhh
Confidence 987753
|
| >2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A | Back alignment and structure |
|---|
Probab=99.93 E-value=3.9e-26 Score=284.33 Aligned_cols=98 Identities=23% Similarity=0.472 Sum_probs=86.2
Q ss_pred cccCCCCCCHHHHHHHHHHHhhccCC---CeeeeeCCCCCcCHHHHHHHHHHHHh--cCCCEEEEEccCCCccccCCEEE
Q 037346 476 IGERGINLSGGQKQRIQIARPLYQDA---DIFLLDDPFSPVDDHTGAHLFKFCWV--SSSKTVIYATHQVEFLPAADLIL 550 (1156)
Q Consensus 476 v~~~g~~LSgGqkqRi~lAral~~~~---~illlDep~s~lD~~~~~~i~~~~~~--~~~~tvi~vtH~~~~~~~~d~i~ 550 (1156)
.+....+|||||||||+|||||+.+| ++|||||||++||+...+.+.+.+.. .+|+|||+|||+++.+..||+|+
T Consensus 839 l~~~~~~LSGGekQRv~LAraL~~~p~~p~lLILDEPTsGLD~~~~~~l~~lL~~L~~~G~TVIvisHdl~~i~~aDrIi 918 (972)
T 2r6f_A 839 LGQPATTLSGGEAQRVKLAAELHRRSNGRTLYILDEPTTGLHVDDIARLLDVLHRLVDNGDTVLVIEHNLDVIKTADYII 918 (972)
T ss_dssp TTCCGGGCCHHHHHHHHHHHHHSSCCCSCEEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECCCHHHHTTCSEEE
T ss_pred ccCchhhCCHHHHHHHHHHHHHhcCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEcCCHHHHHhCCEEE
Confidence 45667899999999999999999875 99999999999999999998876643 46899999999999888899999
Q ss_pred EE------eCCeEEEccChHHHHhcCcch
Q 037346 551 VI------KDGKITQAGKYSDILNSGTDF 573 (1156)
Q Consensus 551 ~l------~~G~i~~~g~~~~l~~~~~~~ 573 (1156)
+| ++|+|+..|+++++.+....+
T Consensus 919 vL~p~gG~~~G~Iv~~g~~~el~~~~~~~ 947 (972)
T 2r6f_A 919 DLGPEGGDRGGQIVAVGTPEEVAEVKESH 947 (972)
T ss_dssp EECSSSTTSCCSEEEEESHHHHHTCTTCH
T ss_pred EEcCCCCCCCCEEEEecCHHHHHhCchhH
Confidence 99 689999999999998654433
|
| >4aby_A DNA repair protein RECN; hydrolase, double strand break repair, ATPase, nucleotide binding domain; HET: DNA; 3.00A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=99.92 E-value=2.5e-25 Score=263.75 Aligned_cols=78 Identities=17% Similarity=0.222 Sum_probs=71.7
Q ss_pred CCHHHHHHHHHHHhhccCC--CeeeeeCCCCCcCHHHHHHHHHHHHh-cCCCEEEEEccCCCccccCCEEEEE----eCC
Q 037346 483 LSGGQKQRIQIARPLYQDA--DIFLLDDPFSPVDDHTGAHLFKFCWV-SSSKTVIYATHQVEFLPAADLILVI----KDG 555 (1156)
Q Consensus 483 LSgGqkqRi~lAral~~~~--~illlDep~s~lD~~~~~~i~~~~~~-~~~~tvi~vtH~~~~~~~~d~i~~l----~~G 555 (1156)
||||||||++|||+|+.+| ++|||||||++||+.+...+.+.+.. .+|.|||+|||+++++..||++++| ++|
T Consensus 296 lSgGe~qrl~lA~~l~~~~~~~~LlLDEpt~~LD~~~~~~l~~~L~~l~~~~~vi~itH~~~~~~~~d~i~~l~k~~~~G 375 (415)
T 4aby_A 296 ASGGELSRVMLAVSTVLGADTPSVVFDEVDAGIGGAAAIAVAEQLSRLADTRQVLVVTHLAQIAARAHHHYKVEKQVEDG 375 (415)
T ss_dssp SCHHHHHHHHHHHHHHHCCSSSEEEESSTTTTCCHHHHHHHHHHHHHHTTTSEEEEECSCHHHHTTCSEEEEEEEEEETT
T ss_pred cCHhHHHHHHHHHHHHhCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHhCCCEEEEEeCcHHHHhhcCeEEEEEEeccCC
Confidence 7999999999999999999 99999999999999999999887754 3589999999999888889999999 999
Q ss_pred eEEEc
Q 037346 556 KITQA 560 (1156)
Q Consensus 556 ~i~~~ 560 (1156)
+++..
T Consensus 376 ~~~~~ 380 (415)
T 4aby_A 376 RTVSH 380 (415)
T ss_dssp EEEEE
T ss_pred ceEEE
Confidence 98754
|
| >2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A* | Back alignment and structure |
|---|
Probab=99.90 E-value=2.2e-27 Score=264.41 Aligned_cols=195 Identities=15% Similarity=0.173 Sum_probs=143.1
Q ss_pred HHHHHHhHHHHHHHHhhcCCCCCcccccCCCCCCCCCC-CCeEEEEEEEEEE------------cCCCCceeeCCCCCCH
Q 037346 907 KNLERKIISVERILQCACIPSEPALVIEATKPNNSRPS-HGEVNIRHLQVRY------------APNLPLVLRGRTGSGK 973 (1156)
Q Consensus 907 ~~~~~~~~s~~Ri~~~~~~~~e~~~~~~~~~~~~~~p~-~g~I~~~~Vsf~Y------------~~~~~~vL~G~SGsGK 973 (1156)
..+.....+.+|+.++++.+++... ....|+. .+.|+++||+|+| ++++.++|.|||||||
T Consensus 66 ~~~~~a~~a~~ri~~~l~~~~~~~~------~~~~~~~~~~~i~~~~vs~~y~~~vL~~vsl~i~~Ge~vaIvGpsGsGK 139 (305)
T 2v9p_A 66 RHYLRAETQALSMPAYIKARCKLAT------GEGSWKSILTFFNYQNIELITFINALKLWLKGIPKKNCLAFIGPPNTGK 139 (305)
T ss_dssp HHHHHHHHHHSCHHHHHHHHHHHCC------SSCCTHHHHHHHHHTTCCHHHHHHHHHHHHHTCTTCSEEEEECSSSSSH
T ss_pred HHHHHHHHHHHHHHHHHhccccccC------CCCcccccCCeEEEEEEEEEcChhhhccceEEecCCCEEEEECCCCCcH
Confidence 3456677788899888765433210 1112332 2357888888887 4666778999999999
Q ss_pred HHHHHHHhhcccCCCceEEEcCeeCCCCChHHHhhcCeeeccccccccccchh-ccCCCCCCCHHHHHHHHHHcCCChHH
Q 037346 974 STLIQTLFRIVESTAGHILIDGKDISLIGLHDLRTRLSIIPQDPTMFEGTTRS-NLDPLEEHADEQIWEALDKCQLGDEV 1052 (1156)
Q Consensus 974 STL~~lL~rl~~p~~G~I~idG~di~~i~~~~LR~~i~~VpQdp~LF~gTIr~-Nl~~~~~~~deei~~al~~~~l~~~i 1052 (1156)
|||+++|+|++ +|+| +++++|+|.+|.+|+++ ||.+..+.++ .+++.++.. +.+..
T Consensus 140 STLl~lL~gl~---~G~I------------------~~~v~q~~~lf~~ti~~~ni~~~~~~~~-~~~~~i~~~-L~~gl 196 (305)
T 2v9p_A 140 SMLCNSLIHFL---GGSV------------------LSFANHKSHFWLASLADTRAALVDDATH-ACWRYFDTY-LRNAL 196 (305)
T ss_dssp HHHHHHHHHHH---TCEE------------------ECGGGTTSGGGGGGGTTCSCEEEEEECH-HHHHHHHHT-TTGGG
T ss_pred HHHHHHHhhhc---CceE------------------EEEecCccccccccHHHHhhccCccccH-HHHHHHHHH-hHccC
Confidence 99999999999 8998 35789999999999998 9987644443 555555543 22111
Q ss_pred --HhhcCCccccccccccCCCEEEEecCCcCCCHHHHHHHHHHHHHhcCCceEEEeecCcccccccCEEEEEeCcEEeee
Q 037346 1053 --RKKKGKLDSQGRVLLKKSKVLVLDEATASVDTATDNQIQQTLRQHFSDCTVVTIAHRITSVLDSAMVLLLNHGLIKEY 1130 (1156)
Q Consensus 1053 --~~lp~gl~s~ARALLr~~~ILiLDEaTS~LD~~te~~I~~~l~~~~~~~TvI~IaHrl~ti~~~D~I~Vl~~G~IvE~ 1130 (1156)
..+.+|--..|||++++|+||| ||+||+++++.|+. ++||++++..||+| ||++|+|++.
T Consensus 197 dg~~LSgGqkQRARAll~~p~iLl----Ts~LD~~~~~~i~~-------------ltH~~~~~~~aD~i-vl~~G~iv~~ 258 (305)
T 2v9p_A 197 DGYPVSIDRKHKAAVQIKAPPLLV----TSNIDVQAEDRYLY-------------LHSRVQTFRFEQPC-TDESGEQPFN 258 (305)
T ss_dssp GTCCEECCCSSCCCCEECCCCEEE----EESSCSTTCGGGGG-------------GTTTEEEEECCCCC-CCC---CCCC
T ss_pred CccCcCHHHHHHHHHHhCCCCEEE----ECCCCHHHHHHHHH-------------HhCCHHHHHhCCEE-EEeCCEEEEe
Confidence 1122222222999999999999 99999999998862 39999999999999 9999999999
Q ss_pred cChhHHhcCCCChHHHHHHHHh
Q 037346 1131 DSPTKLLENKSSSFAQLVAEYT 1152 (1156)
Q Consensus 1131 G~~~eLl~~~~g~f~~l~~~~~ 1152 (1156)
|+|++| ++.|++++..+.
T Consensus 259 g~~~el----~~~y~~l~~~~~ 276 (305)
T 2v9p_A 259 ITDADW----KSFFVRLWGRLD 276 (305)
T ss_dssp CCHHHH----HHHHHHSTTTTT
T ss_pred CCHHHH----HHHHHHHHHHcc
Confidence 999999 578999887543
|
| >1e69_A Chromosome segregation SMC protein; structural maintenance of chromosomes, coiled coil; 3.1A {Thermotoga maritima} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=99.88 E-value=1.2e-22 Score=231.75 Aligned_cols=180 Identities=24% Similarity=0.283 Sum_probs=121.9
Q ss_pred ccceEEeeCCeEEEEEcCCCCChHHHHHHHhCCC----------------------------------------------
Q 037346 377 RNINLKVFHGMRVAVCGTVGSGKSSCLSCILGGV---------------------------------------------- 410 (1156)
Q Consensus 377 ~~i~l~i~~g~~~~ivG~~GsGKSTll~~i~g~~---------------------------------------------- 410 (1156)
+++++++.+| +++|+||||||||||+.+|...+
T Consensus 16 ~~~~l~~~~g-~~~i~G~NGsGKS~ll~ai~~llg~~~~~s~r~~~~~~li~~g~~~~~~~~~~~v~~~f~~~~~~~~i~ 94 (322)
T 1e69_A 16 RPSLIGFSDR-VTAIVGPNGSGKSNIIDAIKWVFGEQSKKELRASEKFDMIFAGSENLPPAGSAYVELVFEENGEEITVA 94 (322)
T ss_dssp SCEEEECCSS-EEEEECCTTTCSTHHHHHHHHTSCC----------CCTTBCCCBTTBCCCSEEEEEEEEESSSCEEEEE
T ss_pred CCeEEecCCC-cEEEECCCCCcHHHHHHHHHHHhCCCchhhcccccHHHhhccCccCCCCCceEEEEEEEEeCCeEEEEE
Confidence 3578899999 99999999999999999998432
Q ss_pred ----CCCCcEEEEcCeE-------------EEEecCCcCC-CccHHHHhhcCCCC-----C--------HHHHHHHHHHh
Q 037346 411 ----PKESGIIRLCGTK-------------AYVAQSPWIQ-SGKIEENILFGKEM-----D--------RERYERVLEAC 459 (1156)
Q Consensus 411 ----~~~~G~i~~~g~~-------------~~v~Q~~~~~-~~ti~eni~~~~~~-----~--------~~~~~~~~~~~ 459 (1156)
.+.+|.+.+||.. ++.||+..+. .+++.+|+...... + ...|+++.+.+
T Consensus 95 r~~~~~~~~~~~ing~~~~~~~~~~~~~~~g~~~~~~~lv~qg~i~~~~~~~p~~rr~~ld~~~~~~~~~~~y~rv~e~~ 174 (322)
T 1e69_A 95 RELKRTGENTYYLNGSPVRLKDIRDRFAGTGLGVDFYSIVGQGQIDRIVNASPEELRLESSKHPTSLVPRGSYQRVNESF 174 (322)
T ss_dssp EEEETTSCEEEEETTEEECHHHHHHHTTTSSTTTTCCSEEEHHHHHHHHTC---------------------CHHHHHHH
T ss_pred EEEEcCCceEEEECCcCccHHHHHHHHHHcCCChhheeeEehhhHHHHHhccHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Confidence 2334677888742 4455554433 67888887654220 0 01233333321
Q ss_pred C---------------Cch-hhhhCCCCCcccc------ccCCCCCCHHHHHHHHHHHhhc----cCCCeeeeeCCCCCc
Q 037346 460 S---------------LKK-DLEVLPFGDQTII------GERGINLSGGQKQRIQIARPLY----QDADIFLLDDPFSPV 513 (1156)
Q Consensus 460 ~---------------l~~-~~~~~~~g~~t~v------~~~g~~LSgGqkqRi~lAral~----~~~~illlDep~s~l 513 (1156)
. +.. ....++.|.++.+ ...+.+||||||||++|||||+ .+|+++||||||++|
T Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~~~~~~~~~~~~~lS~Gq~q~v~ia~~l~~~~~~~~~~lllDEp~~~L 254 (322)
T 1e69_A 175 NRFISLLFFGGEGRLNIVSEAKSILDAGFEISIRKPGRRDQKLSLLSGGEKALVGLALLFALMEIKPSPFYVLDEVDSPL 254 (322)
T ss_dssp HHHHHHHHTSCEEEC--------------CCEEECTTSCCCBGGGSCHHHHHHHHHHHHHHHTTTSCCSEEEEESCCSSC
T ss_pred HHHHHHhcCCceEEEEeeccccccccCCeEEEEecCccccCchhhCCHHHHHHHHHHHHHHHhccCCCCEEEEeCCCCCC
Confidence 0 000 0112333443332 2345689999999999999996 689999999999999
Q ss_pred CHHHHHHHHHHHHh-cCCCEEEEEccCCCccccCCEE--EEEeCCeE
Q 037346 514 DDHTGAHLFKFCWV-SSSKTVIYATHQVEFLPAADLI--LVIKDGKI 557 (1156)
Q Consensus 514 D~~~~~~i~~~~~~-~~~~tvi~vtH~~~~~~~~d~i--~~l~~G~i 557 (1156)
|+...+.+++.+.. .+++|+|++||+.+.+..||++ ++|++|..
T Consensus 255 D~~~~~~l~~~l~~~~~~~~vi~~tH~~~~~~~~d~~~~v~~~~g~s 301 (322)
T 1e69_A 255 DDYNAERFKRLLKENSKHTQFIVITHNKIVMEAADLLHGVTMVNGVS 301 (322)
T ss_dssp CHHHHHHHHHHHHHHTTTSEEEEECCCTTGGGGCSEEEEEEESSSCE
T ss_pred CHHHHHHHHHHHHHhcCCCeEEEEECCHHHHhhCceEEEEEEeCCEE
Confidence 99999998876644 3578999999998877889987 88888865
|
| >3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032} | Back alignment and structure |
|---|
Probab=99.87 E-value=1.2e-24 Score=230.82 Aligned_cols=138 Identities=14% Similarity=0.113 Sum_probs=90.3
Q ss_pred CCccccceEEeeCCeEEEEEcCCCCChHHHHHHHhCCCCCCCcEEEE----------cCeEEEEecCCcCCCccHHHHh-
Q 037346 373 NPTLRNINLKVFHGMRVAVCGTVGSGKSSCLSCILGGVPKESGIIRL----------CGTKAYVAQSPWIQSGKIEENI- 441 (1156)
Q Consensus 373 ~~~l~~i~l~i~~g~~~~ivG~~GsGKSTll~~i~g~~~~~~G~i~~----------~g~~~~v~Q~~~~~~~ti~eni- 441 (1156)
+.+|+|+ ++|++++|+||||||||||+++|+|+ +|++|+|.. ...++|+||++ +||+
T Consensus 13 ~~~l~~i----~~Ge~~~liG~nGsGKSTLl~~l~Gl-~p~~G~I~~~~~~~~~~~~~~~ig~v~q~~-------~enl~ 80 (208)
T 3b85_A 13 KHYVDAI----DTNTIVFGLGPAGSGKTYLAMAKAVQ-ALQSKQVSRIILTRPAVEAGEKLGFLPGTL-------NEKID 80 (208)
T ss_dssp HHHHHHH----HHCSEEEEECCTTSSTTHHHHHHHHH-HHHTTSCSEEEEEECSCCTTCCCCSSCC-------------C
T ss_pred HHHHHhc----cCCCEEEEECCCCCCHHHHHHHHhcC-CCcCCeeeeEEecCCchhhhcceEEecCCH-------HHHHH
Confidence 4688885 89999999999999999999999999 999998843 12468888887 6666
Q ss_pred hcCCC--------CCHHHHHHHHHHhCCchhhhhCCCCCccccccCCCCCCHHHHHHHHHHHhhccCCCeeeeeCCCCCc
Q 037346 442 LFGKE--------MDRERYERVLEACSLKKDLEVLPFGDQTIIGERGINLSGGQKQRIQIARPLYQDADIFLLDDPFSPV 513 (1156)
Q Consensus 442 ~~~~~--------~~~~~~~~~~~~~~l~~~~~~~~~g~~t~v~~~g~~LSgGqkqRi~lAral~~~~~illlDep~s~l 513 (1156)
.++.+ .+.+++++++ .. .| |||||++|||||+.+|+++||||||++
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~l--------------------~~---gl--Gq~qrv~lAraL~~~p~lllLDEPts~- 134 (208)
T 3b85_A 81 PYLRPLHDALRDMVEPEVIPKLM--------------------EA---GI--VEVAPLAYMRGRTLNDAFVILDEAQNT- 134 (208)
T ss_dssp TTTHHHHHHHTTTSCTTHHHHHH--------------------HT---TS--EEEEEGGGGTTCCBCSEEEEECSGGGC-
T ss_pred HHHHHHHHHHHHhccHHHHHHHH--------------------Hh---CC--chHHHHHHHHHHhcCCCEEEEeCCccc-
Confidence 34310 0111111111 11 12 999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHh-cCCCEEEEEccCCCccccCCEEEEEeCC
Q 037346 514 DDHTGAHLFKFCWV-SSSKTVIYATHQVEFLPAADLILVIKDG 555 (1156)
Q Consensus 514 D~~~~~~i~~~~~~-~~~~tvi~vtH~~~~~~~~d~i~~l~~G 555 (1156)
++..+.+.+.. .+|+|+| +||+++.+.. +...++|
T Consensus 135 ---~~~~l~~~l~~l~~g~tii-vtHd~~~~~~---~~~~~~G 170 (208)
T 3b85_A 135 ---TPAQMKMFLTRLGFGSKMV-VTGDITQVDL---PGGQKSG 170 (208)
T ss_dssp ---CHHHHHHHHTTBCTTCEEE-EEEC---------------C
T ss_pred ---cHHHHHHHHHHhcCCCEEE-EECCHHHHhC---cCCCCCc
Confidence 55666665533 3578999 9999876543 3334555
|
| >3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A* | Back alignment and structure |
|---|
Probab=99.87 E-value=4.1e-23 Score=238.75 Aligned_cols=83 Identities=27% Similarity=0.400 Sum_probs=74.1
Q ss_pred ccCCCCCCHHHHHHHHHHHhhc------cCCCeeeeeCCCCCcCHHHHHHHHHHHHh--cCCCEEEEEccCCCccccCCE
Q 037346 477 GERGINLSGGQKQRIQIARPLY------QDADIFLLDDPFSPVDDHTGAHLFKFCWV--SSSKTVIYATHQVEFLPAADL 548 (1156)
Q Consensus 477 ~~~g~~LSgGqkqRi~lAral~------~~~~illlDep~s~lD~~~~~~i~~~~~~--~~~~tvi~vtH~~~~~~~~d~ 548 (1156)
+....+||||||||++|||||. .+|++|||||||++||+.....+++.+.. ..|+|+|+|||+++....||+
T Consensus 274 ~~~~~~LSgGe~qr~~la~al~~~~~~~~~p~~lllDEpt~~LD~~~~~~~~~~l~~l~~~g~tvi~itH~~~~~~~~d~ 353 (365)
T 3qf7_A 274 ERPARGLSGGERALISISLAMSLAEVASGRLDAFFIDEGFSSLDTENKEKIASVLKELERLNKVIVFITHDREFSEAFDR 353 (365)
T ss_dssp EEEGGGSCHHHHHHHHHHHHHHHHHHTTTTCCEEEEESCCTTSCHHHHHHHHHHHHGGGGSSSEEEEEESCHHHHTTCSC
T ss_pred CCCchhCCHHHHHHHHHHHHHHhhhcccCCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEecchHHHHhCCE
Confidence 4566789999999999999999 79999999999999999999999876644 468999999999998778999
Q ss_pred EEEEeCCeEEE
Q 037346 549 ILVIKDGKITQ 559 (1156)
Q Consensus 549 i~~l~~G~i~~ 559 (1156)
|++|++|+++.
T Consensus 354 ~~~l~~G~i~~ 364 (365)
T 3qf7_A 354 KLRITGGVVVN 364 (365)
T ss_dssp EEEEETTEEC-
T ss_pred EEEEECCEEEe
Confidence 99999999874
|
| >4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A* | Back alignment and structure |
|---|
Probab=99.86 E-value=2.9e-23 Score=214.18 Aligned_cols=146 Identities=13% Similarity=0.135 Sum_probs=99.4
Q ss_pred cceEEeeCCeEEEEEcCCCCChHHHHHHHhCCCCCCCcEEEEcC--eEEEEecCCcC--CCccHHHHhhcCCCCCHHHHH
Q 037346 378 NINLKVFHGMRVAVCGTVGSGKSSCLSCILGGVPKESGIIRLCG--TKAYVAQSPWI--QSGKIEENILFGKEMDRERYE 453 (1156)
Q Consensus 378 ~i~l~i~~g~~~~ivG~~GsGKSTll~~i~g~~~~~~G~i~~~g--~~~~v~Q~~~~--~~~ti~eni~~~~~~~~~~~~ 453 (1156)
|+||++++||+++|+||||||||||++++.+... .+++ ..++++|++.- +.+++.+++..
T Consensus 1 ~vsl~i~~gei~~l~G~nGsGKSTl~~~~~~~~~------~~~~d~~~g~~~~~~~~~~~~~~~~~~~~~---------- 64 (171)
T 4gp7_A 1 SMKLTIPELSLVVLIGSSGSGKSTFAKKHFKPTE------VISSDFCRGLMSDDENDQTVTGAAFDVLHY---------- 64 (171)
T ss_dssp CEEEEEESSEEEEEECCTTSCHHHHHHHHSCGGG------EEEHHHHHHHHCSSTTCGGGHHHHHHHHHH----------
T ss_pred CccccCCCCEEEEEECCCCCCHHHHHHHHccCCe------EEccHHHHHHhcCcccchhhHHHHHHHHHH----------
Confidence 6899999999999999999999999998664222 1221 12566666531 12233332211
Q ss_pred HHHHHhCCchhhhhCCCCCccccccCCCCCCHHHHHHHHHHHhhccCCCeeeeeCCCCCcCHHHH---------------
Q 037346 454 RVLEACSLKKDLEVLPFGDQTIIGERGINLSGGQKQRIQIARPLYQDADIFLLDDPFSPVDDHTG--------------- 518 (1156)
Q Consensus 454 ~~~~~~~l~~~~~~~~~g~~t~v~~~g~~LSgGqkqRi~lAral~~~~~illlDep~s~lD~~~~--------------- 518 (1156)
..+ ..+..|..+.+.. ....|||||||++||||+..+|++++|||||++||+.++
T Consensus 65 -~~~--------~~~~~g~~~~~~~-~~~~s~g~~qrv~iAral~~~p~~lllDEPt~~Ld~~~~~R~~~~~~~~vi~~~ 134 (171)
T 4gp7_A 65 -IVS--------KRLQLGKLTVVDA-TNVQESARKPLIEMAKDYHCFPVAVVFNLPEKVCQERNKNRTDRQVEEYVIRKH 134 (171)
T ss_dssp -HHH--------HHHHTTCCEEEES-CCCSHHHHHHHHHHHHHTTCEEEEEEECCCHHHHHHHHHTCSSCCCCHHHHHHH
T ss_pred -HHH--------HHHhCCCeEEEEC-CCCCHHHHHHHHHHHHHcCCcEEEEEEeCCHHHHHHHHhcccCCCCCHHHHHHH
Confidence 000 0011233333332 235699999999999999999999999999999999944
Q ss_pred -HHHHHHHH--hcCCCEEEEEccCCCccccCCEE
Q 037346 519 -AHLFKFCW--VSSSKTVIYATHQVEFLPAADLI 549 (1156)
Q Consensus 519 -~~i~~~~~--~~~~~tvi~vtH~~~~~~~~d~i 549 (1156)
+.+.+.+. ..+|.|+|++||+++.+..++++
T Consensus 135 ~~~l~~~l~~l~~~g~tvi~vtH~~~~~~~~~~~ 168 (171)
T 4gp7_A 135 TQQMKKSIKGLQREGFRYVYILNSPEEVEEVVFE 168 (171)
T ss_dssp HHHHHHHSTTHHHHTCSEEEEECSHHHHHHEEEE
T ss_pred HHHhhhhhhhHHhcCCcEEEEeCCHHHhhhhhhc
Confidence 55655432 23489999999999887766554
|
| >4aby_A DNA repair protein RECN; hydrolase, double strand break repair, ATPase, nucleotide binding domain; HET: DNA; 3.00A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=99.84 E-value=8.7e-22 Score=233.26 Aligned_cols=181 Identities=15% Similarity=0.167 Sum_probs=138.3
Q ss_pred EEEEEEEEcCCCCceeeCCCCCCHHHHHHHHhhccc--------------------------------------CCCceE
Q 037346 950 IRHLQVRYAPNLPLVLRGRTGSGKSTLIQTLFRIVE--------------------------------------STAGHI 991 (1156)
Q Consensus 950 ~~~Vsf~Y~~~~~~vL~G~SGsGKSTL~~lL~rl~~--------------------------------------p~~G~I 991 (1156)
++++++...++ ..+|.|+||||||||+++|.++.. +.+|+|
T Consensus 51 l~~v~l~~~~G-~~~lvG~NGaGKStLl~aI~~l~~~~~~~~~i~~g~~~~~v~~~~~~~~~~~~~~l~r~~~~~~~~~i 129 (415)
T 4aby_A 51 ITQLELELGGG-FCAFTGETGAGKSIIVDALGLLLGGRANHDLIRSGEKELLVTGFWGDGDESEADSASRRLSSAGRGAA 129 (415)
T ss_dssp EEEEEEECCSS-EEEEEESHHHHHHHHTHHHHHHTTCCCCGGGBCTTCSEEEEEEEC--------CEEEEEEETTSCEEE
T ss_pred eeeEEEecCCC-cEEEECCCCCCHHHHHHHHHHHhCCCccHHHhcCCCCeEEEEEEEEecCCCceEEEEEEEecCCceEE
Confidence 67889998888 789999999999999999966653 457899
Q ss_pred EEcCeeCCCCChHHHhhc-CeeeccccccccccchhccCCCCCCC-----------------------------------
Q 037346 992 LIDGKDISLIGLHDLRTR-LSIIPQDPTMFEGTTRSNLDPLEEHA----------------------------------- 1035 (1156)
Q Consensus 992 ~idG~di~~i~~~~LR~~-i~~VpQdp~LF~gTIr~Nl~~~~~~~----------------------------------- 1035 (1156)
++||.+++..++.++++. +++++|++.++-.+..++..+.+...
T Consensus 130 ~ing~~~~~~~~~~~~~~~i~~~~q~~~l~l~~~~~~r~~ld~~~~~~~~~~~~~~~~y~~~~~~~~~l~~~~~~~~~~~ 209 (415)
T 4aby_A 130 RLSGEVVSVRELQEWAQGRLTIHWQHSAVSLLSPANQRGLLDRRVTKEAQAYAAAHAAWREAVSRLERLQASESSKHPTS 209 (415)
T ss_dssp EETTEEECHHHHHHHHTTTEEEETTTCTTTTSSHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHC-----------
T ss_pred EECCEECCHHHHHHHHhhceEEecCcccccccCHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHHHHHHhhhhhhcCcc
Confidence 999999988778888877 79999999887665443322211111
Q ss_pred --------------------------------HHHHHHHHHHcCCChH--HHh------------------h-cCC----
Q 037346 1036 --------------------------------DEQIWEALDKCQLGDE--VRK------------------K-KGK---- 1058 (1156)
Q Consensus 1036 --------------------------------deei~~al~~~~l~~~--i~~------------------l-p~g---- 1058 (1156)
.+++.+.++..++.+. ... + +++
T Consensus 210 i~~~~~l~~~~~~l~~~~~~l~~~R~~~~~~l~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 289 (415)
T 4aby_A 210 LVPRGSVDALHAELLKVGQALDAAREREAEPLVDSLLAVIRELGMPHARMEFALSALAEPAAYGLSDVLLRFSANPGEEL 289 (415)
T ss_dssp CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTCTTCEEEEEEEEEEEEETTEEEEEEEEEESSSSCCC
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceEEEEEeeccCCCCCCCceEEEEEEcCCCCcc
Confidence 1223344444444320 000 0 000
Q ss_pred -----cccc--------ccccccCC--CEEEEecCCcCCCHHHHHHHHHHHHHhcCCceEEEeecCcccccccCEEEEE-
Q 037346 1059 -----LDSQ--------GRVLLKKS--KVLVLDEATASVDTATDNQIQQTLRQHFSDCTVVTIAHRITSVLDSAMVLLL- 1122 (1156)
Q Consensus 1059 -----l~s~--------ARALLr~~--~ILiLDEaTS~LD~~te~~I~~~l~~~~~~~TvI~IaHrl~ti~~~D~I~Vl- 1122 (1156)
+.|+ ||+|+.+| +||||||||++||+++...|.+.|+++.+++|||+|||+++.+..||+|+||
T Consensus 290 ~~~~~~lSgGe~qrl~lA~~l~~~~~~~~LlLDEpt~~LD~~~~~~l~~~L~~l~~~~~vi~itH~~~~~~~~d~i~~l~ 369 (415)
T 4aby_A 290 GPLSDVASGGELSRVMLAVSTVLGADTPSVVFDEVDAGIGGAAAIAVAEQLSRLADTRQVLVVTHLAQIAARAHHHYKVE 369 (415)
T ss_dssp CBGGGCSCHHHHHHHHHHHHHHHCCSSSEEEESSTTTTCCHHHHHHHHHHHHHHTTTSEEEEECSCHHHHTTCSEEEEEE
T ss_pred cchhhhcCHhHHHHHHHHHHHHhCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHhCCCEEEEEeCcHHHHhhcCeEEEEE
Confidence 1233 79999999 9999999999999999999999999988899999999999999999999999
Q ss_pred ---eCcEEeeec
Q 037346 1123 ---NHGLIKEYD 1131 (1156)
Q Consensus 1123 ---~~G~IvE~G 1131 (1156)
++|+++...
T Consensus 370 k~~~~G~~~~~~ 381 (415)
T 4aby_A 370 KQVEDGRTVSHV 381 (415)
T ss_dssp EEEETTEEEEEE
T ss_pred EeccCCceEEEE
Confidence 999988653
|
| >2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.83 E-value=2.1e-23 Score=246.70 Aligned_cols=165 Identities=10% Similarity=0.043 Sum_probs=133.9
Q ss_pred cCCCCceeeCCCCCCHHHHHHHHhhcccCCCc-e-EEEcCeeCCCCChHHHhhcCeeecccccccc----ccchhccCCC
Q 037346 958 APNLPLVLRGRTGSGKSTLIQTLFRIVESTAG-H-ILIDGKDISLIGLHDLRTRLSIIPQDPTMFE----GTTRSNLDPL 1031 (1156)
Q Consensus 958 ~~~~~~vL~G~SGsGKSTL~~lL~rl~~p~~G-~-I~idG~di~~i~~~~LR~~i~~VpQdp~LF~----gTIr~Nl~~~ 1031 (1156)
.+++.++|.||||||||||+++|+|++.|++| + |++|| +.|+.+++|||++.+|. .|+++|+ ++
T Consensus 136 ~~Ge~v~IvGpnGsGKSTLlr~L~Gl~~p~~G~~pI~vdg---------~~~~~i~~vpq~~~l~~~~~~~tv~eni-~~ 205 (460)
T 2npi_A 136 FEGPRVVIVGGSQTGKTSLSRTLCSYALKFNAYQPLYINL---------DPQQPIFTVPGCISATPISDILDAQLPT-WG 205 (460)
T ss_dssp SSCCCEEEEESTTSSHHHHHHHHHHTTHHHHCCCCEEEEC---------CTTSCSSSCSSCCEEEECCSCCCTTCTT-CS
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCcccccCCceeEEEcC---------CccCCeeeeccchhhcccccccchhhhh-cc
Confidence 46777899999999999999999999999999 9 99998 14788999999997654 4899998 43
Q ss_pred CC-----CCHHHHHHHHHHcCCChHHHhhcCCcccc-------ccc--cccCCCE----EEEec-CCcCCCHHHHHHHHH
Q 037346 1032 EE-----HADEQIWEALDKCQLGDEVRKKKGKLDSQ-------GRV--LLKKSKV----LVLDE-ATASVDTATDNQIQQ 1092 (1156)
Q Consensus 1032 ~~-----~~deei~~al~~~~l~~~i~~lp~gl~s~-------ARA--LLr~~~I----LiLDE-aTS~LD~~te~~I~~ 1092 (1156)
.. ..++.+.++++.+|+.+... +..|..+ ||| |+++|+| ||||| ||++||+. .+.|.+
T Consensus 206 ~~~~~~~~~~~~~~~ll~~~gl~~~~~--~~~LSgGq~qrlalAra~rL~~~p~i~~sGLlLDEpPts~LD~~-~~~l~~ 282 (460)
T 2npi_A 206 QSLTSGATLLHNKQPMVKNFGLERINE--NKDLYLECISQLGQVVGQRLHLDPQVRRSGCIVDTPSISQLDEN-LAELHH 282 (460)
T ss_dssp CBCBSSCCSSCCBCCEECCCCSSSGGG--CHHHHHHHHHHHHHHHHHHHHHCHHHHHSCEEEECCCGGGSCSS-CHHHHH
T ss_pred cccccCcchHHHHHHHHHHhCCCcccc--hhhhhHHHHHHHHHHHHHHhccCcccCcceEEEeCCcccccChh-HHHHHH
Confidence 21 12344667788888877643 3333322 899 9999999 99999 99999999 777888
Q ss_pred HHHHhcCCceEEEeecCcc------cc-cccCE-----EEEEe-CcEEeeecChhHHhc
Q 037346 1093 TLRQHFSDCTVVTIAHRIT------SV-LDSAM-----VLLLN-HGLIKEYDSPTKLLE 1138 (1156)
Q Consensus 1093 ~l~~~~~~~TvI~IaHrl~------ti-~~~D~-----I~Vl~-~G~IvE~G~~~eLl~ 1138 (1156)
.+++. +.|+|+|+|+.+ .+ .-||+ |++|+ +|+|+ .|+++++.+
T Consensus 283 l~~~~--~~tviiVth~~~~~l~~~~~~~~~dr~~~~~vi~l~k~G~iv-~g~~~~~~~ 338 (460)
T 2npi_A 283 IIEKL--NVNIMLVLCSETDPLWEKVKKTFGPELGNNNIFFIPKLDGVS-AVDDVYKRS 338 (460)
T ss_dssp HHHHT--TCCEEEEECCSSCTHHHHHHHHHHHHHCGGGEEEECCCTTCC-CCCHHHHHH
T ss_pred HHHHh--CCCEEEEEccCchhhhHHHHHHhcccccCCEEEEEeCCCcEE-ECCHHHHhh
Confidence 88765 789999999987 33 45899 99999 99999 899998853
|
| >1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11 | Back alignment and structure |
|---|
Probab=99.83 E-value=5.1e-22 Score=205.59 Aligned_cols=139 Identities=12% Similarity=0.212 Sum_probs=99.5
Q ss_pred EEEEEcCCCCChHHHHHHHhCCCCCC-CcEEE--E-----cCeEEEEecCCcCCCccHHHHhhcCCCCCHHHHHHHHHHh
Q 037346 388 RVAVCGTVGSGKSSCLSCILGGVPKE-SGIIR--L-----CGTKAYVAQSPWIQSGKIEENILFGKEMDRERYERVLEAC 459 (1156)
Q Consensus 388 ~~~ivG~~GsGKSTll~~i~g~~~~~-~G~i~--~-----~g~~~~v~Q~~~~~~~ti~eni~~~~~~~~~~~~~~~~~~ 459 (1156)
.++|+||||||||||+++|+|++... .|... . ..+++|++|++ +..+|+. +.
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~l~i~~~g~~~~~~~~~~~~~~ig~~~~~~-----~~~~~~~-~~-------------- 61 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVERLGKRAIGFWTEEVRDPETKKRTGFRIITT-----EGKKKIF-SS-------------- 61 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHGGGEEEEEEEEEC------CCEEEEEET-----TCCEEEE-EE--------------
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcCCCEEhhhhccccccceeEEEeecC-----cHHHHHH-Hh--------------
Confidence 68999999999999999999998532 23211 1 12468888876 3333431 10
Q ss_pred CCchhhhhCCCCCccccccCCCCCCHHHHHHHHHHHh-----hccCCCeeeeeC--CCCCcCHHHHHHHHHHHHhcCCCE
Q 037346 460 SLKKDLEVLPFGDQTIIGERGINLSGGQKQRIQIARP-----LYQDADIFLLDD--PFSPVDDHTGAHLFKFCWVSSSKT 532 (1156)
Q Consensus 460 ~l~~~~~~~~~g~~t~v~~~g~~LSgGqkqRi~lAra-----l~~~~~illlDe--p~s~lD~~~~~~i~~~~~~~~~~t 532 (1156)
+ ....+..+++.+.+||||||||++|||| ++.+|+++|||| ||++||+...+.+.+.+ ...+.|
T Consensus 62 -~-------~~~~~~~~~~~~~~lSgG~~qr~~la~aa~~~~l~~~p~llilDEigp~~~ld~~~~~~l~~~l-~~~~~~ 132 (178)
T 1ye8_A 62 -K-------FFTSKKLVGSYGVNVQYFEELAIPILERAYREAKKDRRKVIIIDEIGKMELFSKKFRDLVRQIM-HDPNVN 132 (178)
T ss_dssp -T-------TCCCSSEETTEEECHHHHHHHHHHHHHHHHHHHHHCTTCEEEECCCSTTGGGCHHHHHHHHHHH-TCTTSE
T ss_pred -h-------cCCccccccccccCcCHHHHHHHHHHhhccccccccCCCEEEEeCCCCcccCCHHHHHHHHHHH-hcCCCe
Confidence 0 0001134677788999999999999996 999999999999 99999999988887654 345677
Q ss_pred EEEEcc---CCCcccc-CCEEEEEeCCeEEE
Q 037346 533 VIYATH---QVEFLPA-ADLILVIKDGKITQ 559 (1156)
Q Consensus 533 vi~vtH---~~~~~~~-~d~i~~l~~G~i~~ 559 (1156)
+|++|| +.+++.. ||+ .+|++++
T Consensus 133 ~i~~~H~~h~~~~~~~i~~r----~~~~i~~ 159 (178)
T 1ye8_A 133 VVATIPIRDVHPLVKEIRRL----PGAVLIE 159 (178)
T ss_dssp EEEECCSSCCSHHHHHHHTC----TTCEEEE
T ss_pred EEEEEccCCCchHHHHHHhc----CCcEEEE
Confidence 999996 5556653 666 5566654
|
| >1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A* | Back alignment and structure |
|---|
Probab=99.83 E-value=4.3e-23 Score=239.48 Aligned_cols=155 Identities=19% Similarity=0.167 Sum_probs=125.9
Q ss_pred CCccccceEEeeCCe--------------------EEEEEcCCCCChHHHHHHHhCCCCCCCcEEEEcCe----EEEEec
Q 037346 373 NPTLRNINLKVFHGM--------------------RVAVCGTVGSGKSSCLSCILGGVPKESGIIRLCGT----KAYVAQ 428 (1156)
Q Consensus 373 ~~~l~~i~l~i~~g~--------------------~~~ivG~~GsGKSTll~~i~g~~~~~~G~i~~~g~----~~~v~Q 428 (1156)
+.+|+++|+++++|+ +++|+||||||||||+|+|+|+++|++|+|.++|. .+|++|
T Consensus 36 ~~~l~~is~~i~~Ge~~~~~~~i~~~L~~~~~~~~~valvG~nGaGKSTLln~L~Gl~~p~~GsI~~~g~~~t~~~~v~q 115 (413)
T 1tq4_A 36 QEILNLIELRMRAGNIQLTNSAISDALKEIDSSVLNVAVTGETGSGKSSFINTLRGIGNEEEGAAKTGVVEVTMERHPYK 115 (413)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHCCEEEEEEECTTSSHHHHHHHHHTCCTTSTTSCCCCC----CCCEEEE
T ss_pred HHHhhhccceecCCCCcccchhhhhhhhhcccCCeEEEEECCCCCcHHHHHHHHhCCCCccCceEEECCeecceeEEecc
Confidence 358999999999999 99999999999999999999999999999998874 279999
Q ss_pred CCcCCCccHHHHhhcCCCCCHHHHHHHHHHhCCchhhhhCCCCCccccccCCCCCCHH--HHHHHHHHHhhcc-------
Q 037346 429 SPWIQSGKIEENILFGKEMDRERYERVLEACSLKKDLEVLPFGDQTIIGERGINLSGG--QKQRIQIARPLYQ------- 499 (1156)
Q Consensus 429 ~~~~~~~ti~eni~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~t~v~~~g~~LSgG--qkqRi~lAral~~------- 499 (1156)
++...+.|+.||+.++.+ ..+.++.++.+++.+. +.. . .|||| ||||++||||+.+
T Consensus 116 ~~~~~~ltv~D~~g~~~~--~~~~~~~L~~~~L~~~--------~~~----~-~lS~G~~~kqrv~la~aL~~~~~p~~l 180 (413)
T 1tq4_A 116 HPNIPNVVFWDLPGIGST--NFPPDTYLEKMKFYEY--------DFF----I-IISATRFKKNDIDIAKAISMMKKEFYF 180 (413)
T ss_dssp CSSCTTEEEEECCCGGGS--SCCHHHHHHHTTGGGC--------SEE----E-EEESSCCCHHHHHHHHHHHHTTCEEEE
T ss_pred ccccCCeeehHhhcccch--HHHHHHHHHHcCCCcc--------CCe----E-EeCCCCccHHHHHHHHHHHhcCCCeEE
Confidence 986667799999987743 2346677777776431 111 1 29999 9999999999999
Q ss_pred ---CCCeeeeeCCCCCcCHHHHHHHHHHHHh-------cC----CCEEEEEccCCCc
Q 037346 500 ---DADIFLLDDPFSPVDDHTGAHLFKFCWV-------SS----SKTVIYATHQVEF 542 (1156)
Q Consensus 500 ---~~~illlDep~s~lD~~~~~~i~~~~~~-------~~----~~tvi~vtH~~~~ 542 (1156)
+||+++|||||++||+..++++.+.+.. .. .++++++||.++.
T Consensus 181 V~tkpdlllLDEPtsgLD~~~~~~l~~~l~~l~~~~l~~~g~~~~~iiliSsh~l~~ 237 (413)
T 1tq4_A 181 VRTKVDSDITNEADGEPQTFDKEKVLQDIRLNCVNTFRENGIAEPPIFLLSNKNVCH 237 (413)
T ss_dssp EECCHHHHHHHHHTTCCTTCCHHHHHHHHHHHHHHHHHHTTCSSCCEEECCTTCTTS
T ss_pred EEecCcccccCcccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCCcEEEEecCcCCc
Confidence 9999999999999999988877654422 11 2567888998764
|
| >2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A | Back alignment and structure |
|---|
Probab=99.81 E-value=1.4e-23 Score=238.87 Aligned_cols=134 Identities=21% Similarity=0.236 Sum_probs=102.6
Q ss_pred CccccceEEeeCCeEEEEEcCCCCChHHHHHHHhCCCCCCCcEEEEcCeEEEEecCCcCCCccHHHHhhcCCCCCHHHHH
Q 037346 374 PTLRNINLKVFHGMRVAVCGTVGSGKSSCLSCILGGVPKESGIIRLCGTKAYVAQSPWIQSGKIEENILFGKEMDRERYE 453 (1156)
Q Consensus 374 ~~l~~i~l~i~~g~~~~ivG~~GsGKSTll~~i~g~~~~~~G~i~~~g~~~~v~Q~~~~~~~ti~eni~~~~~~~~~~~~ 453 (1156)
++++++|+.+++|+.++|+||||||||||+++|+|+++|++|.|.++|..-+.. +. .++++.+
T Consensus 159 ~~l~~l~~~i~~g~~v~i~G~~GsGKTTll~~l~g~~~~~~g~i~i~~~~e~~~--~~-----~~~~i~~---------- 221 (330)
T 2pt7_A 159 QAISAIKDGIAIGKNVIVCGGTGSGKTTYIKSIMEFIPKEERIISIEDTEEIVF--KH-----HKNYTQL---------- 221 (330)
T ss_dssp HHHHHHHHHHHHTCCEEEEESTTSCHHHHHHHGGGGSCTTSCEEEEESSCCCCC--SS-----CSSEEEE----------
T ss_pred HHHhhhhhhccCCCEEEEECCCCCCHHHHHHHHhCCCcCCCcEEEECCeecccc--cc-----chhEEEE----------
Confidence 489999999999999999999999999999999999999999999987531100 00 0011100
Q ss_pred HHHHHhCCchhhhhCCCCCccccccCCCCCCHHHHHHHHHHHhhccCCCeeeeeCCCCCcCHHHHHHHHHHHHhcCCCEE
Q 037346 454 RVLEACSLKKDLEVLPFGDQTIIGERGINLSGGQKQRIQIARPLYQDADIFLLDDPFSPVDDHTGAHLFKFCWVSSSKTV 533 (1156)
Q Consensus 454 ~~~~~~~l~~~~~~~~~g~~t~v~~~g~~LSgGqkqRi~lAral~~~~~illlDep~s~lD~~~~~~i~~~~~~~~~~tv 533 (1156)
.+ | |||+||++|||||..+|++++||||++. +..+ .++.+ ...+.|+
T Consensus 222 --------------~~-------g-------gg~~~r~~la~aL~~~p~ilildE~~~~---e~~~-~l~~~-~~g~~tv 268 (330)
T 2pt7_A 222 --------------FF-------G-------GNITSADCLKSCLRMRPDRIILGELRSS---EAYD-FYNVL-CSGHKGT 268 (330)
T ss_dssp --------------EC-------B-------TTBCHHHHHHHHTTSCCSEEEECCCCST---HHHH-HHHHH-HTTCCCE
T ss_pred --------------Ee-------C-------CChhHHHHHHHHhhhCCCEEEEcCCChH---HHHH-HHHHH-hcCCCEE
Confidence 00 1 8999999999999999999999999982 3322 22322 2233589
Q ss_pred EEEccCCCccccCCEEEEEeCCeE
Q 037346 534 IYATHQVEFLPAADLILVIKDGKI 557 (1156)
Q Consensus 534 i~vtH~~~~~~~~d~i~~l~~G~i 557 (1156)
|+++|+.+....||++++|++|..
T Consensus 269 i~t~H~~~~~~~~dri~~l~~g~~ 292 (330)
T 2pt7_A 269 LTTLHAGSSEEAFIRLANMSSSNS 292 (330)
T ss_dssp EEEEECSSHHHHHHHHHHHHHTSG
T ss_pred EEEEcccHHHHHhhhheehhcCCc
Confidence 999999997677999999988753
|
| >1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=99.80 E-value=1.1e-22 Score=218.48 Aligned_cols=153 Identities=12% Similarity=0.159 Sum_probs=105.6
Q ss_pred CccccceEEeeCCeEEEEEcCCCCChHHHHHHHhCCCCCCCcEEEEc-------------CeEEEEecCCcCCCc-----
Q 037346 374 PTLRNINLKVFHGMRVAVCGTVGSGKSSCLSCILGGVPKESGIIRLC-------------GTKAYVAQSPWIQSG----- 435 (1156)
Q Consensus 374 ~~l~~i~l~i~~g~~~~ivG~~GsGKSTll~~i~g~~~~~~G~i~~~-------------g~~~~v~Q~~~~~~~----- 435 (1156)
..|+|+||++++|++++|+||||||||||+++|+|++ | |+|.++ ..++|++|++.+|..
T Consensus 11 ~~l~~isl~i~~G~~~~lvGpsGsGKSTLl~~L~g~~-p--G~i~~g~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~ 87 (218)
T 1z6g_A 11 SSGLVPRGSMNNIYPLVICGPSGVGKGTLIKKLLNEF-P--NYFYFSVSCTTRKKREKEKEGVDYYFIDKTIFEDKLKNE 87 (218)
T ss_dssp -----------CCCCEEEECSTTSSHHHHHHHHHHHS-T--TTEEECCCEECSCCCSSCCBTTTBEECCHHHHHHHHHTT
T ss_pred ccccCCceecCCCCEEEEECCCCCCHHHHHHHHHhhC-C--CcEEEeecccCCCCCcccccCCeEEECCHHHHHHhhhcc
Confidence 4699999999999999999999999999999999999 5 988872 135789998765432
Q ss_pred ------cHHHHhhcCCCCCHHHHHHHHHHhCCchhhhhCCCCCccccccCCCCCCHHHHHHHHH-----HHhhccCCCee
Q 037346 436 ------KIEENILFGKEMDRERYERVLEACSLKKDLEVLPFGDQTIIGERGINLSGGQKQRIQI-----ARPLYQDADIF 504 (1156)
Q Consensus 436 ------ti~eni~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~t~v~~~g~~LSgGqkqRi~l-----Aral~~~~~il 504 (1156)
++.+| .+|. ..+..+++++...+ ..++ .+||||||||++| ||+++.+|+++
T Consensus 88 ~~l~~~~~~~~-~~g~--~~~~i~~~l~~~~~------------~il~---~~lsggq~qR~~i~~~~~~~~ll~~~~~~ 149 (218)
T 1z6g_A 88 DFLEYDNYANN-FYGT--LKSEYDKAKEQNKI------------CLFE---MNINGVKQLKKSTHIKNALYIFIKPPSTD 149 (218)
T ss_dssp CEEEEEEETTE-EEEE--EHHHHHHHHHTTCE------------EEEE---ECHHHHHHHTTCSSCCSCEEEEEECSCHH
T ss_pred chhhhhhcccc-cCCC--cHHHHHHHHhCCCc------------EEEE---ecHHHHHHHHHHhcCCCcEEEEEeCcCHH
Confidence 23333 2232 23445566554322 1111 4799999999999 89999999999
Q ss_pred eeeCCCCCcCHHHHHHHHHHHHh-cCCCEEEEEccCCCccccCCEEEEEeC
Q 037346 505 LLDDPFSPVDDHTGAHLFKFCWV-SSSKTVIYATHQVEFLPAADLILVIKD 554 (1156)
Q Consensus 505 llDep~s~lD~~~~~~i~~~~~~-~~~~tvi~vtH~~~~~~~~d~i~~l~~ 554 (1156)
+|||||+++|..+++.+.+.+.. .+++| ++| +..+|.|+++++
T Consensus 150 ~Lde~~~~~d~~~~~~i~~~l~~~~~~~~---~~h----~~~~d~iiv~~~ 193 (218)
T 1z6g_A 150 VLLSRLLTRNTENQEQIQKRMEQLNIELH---EAN----LLNFNLSIINDD 193 (218)
T ss_dssp HHHHHHHHTCCCCHHHHHHHHHHHHHHHH---HHT----TSCCSEEEECSS
T ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHHHHH---hhc----ccCCCEEEECCC
Confidence 99999999999988887766543 23445 677 567999988764
|
| >3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A* | Back alignment and structure |
|---|
Probab=99.80 E-value=4e-22 Score=224.70 Aligned_cols=166 Identities=14% Similarity=0.100 Sum_probs=125.0
Q ss_pred HHHHHHHHHHhccCCCCccccccCCCCCCCccEEEeeeEEEeCCCCCCCccccceEE-----------------------
Q 037346 326 KVPLDRIASFLCLEGLQTDVLEKMPRGNSDTAIEIIDGSFSWDFSSPNPTLRNINLK----------------------- 382 (1156)
Q Consensus 326 ~~s~~Ri~~fl~~~~~~~~~~~~~~~~~~~~~i~~~~~~f~~~~~~~~~~l~~i~l~----------------------- 382 (1156)
+.++.|+.+.+..+..... ....+ ..+..|+++||++.|. ++++++++.
T Consensus 15 r~~~~~l~~~~~~~~~~~~-~~~l~--~~~~~i~~~~v~~~y~-----p~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 86 (312)
T 3aez_A 15 RRQWRALRMSTPLALTEEE-LVGLR--GLGEQIDLLEVEEVYL-----PLARLIHLQVAARQRLFAATAEFLGEPQQNPD 86 (312)
T ss_dssp HHHHHGGGTTCCCCCCHHH-HHTTC--CTTCCCCHHHHHHTHH-----HHHHHHHHHHHHHHHHHHHHHHHTTCCCCCSS
T ss_pred HHHHHHHHhcCCCCCCHHH-HHhcc--CCCCeEEeeehhhhhh-----hHHHHHHHHHhhhhHHHHHHHHhhcccccccC
Confidence 4566777666554322111 11111 2344699999999994 577777765
Q ss_pred eeCCeEEEEEcCCCCChHHHHHHHhCCCCCCCcEEEEcCeEEEEecCCcCCCccHHHHhhcCC------CCCHHHHHHHH
Q 037346 383 VFHGMRVAVCGTVGSGKSSCLSCILGGVPKESGIIRLCGTKAYVAQSPWIQSGKIEENILFGK------EMDRERYERVL 456 (1156)
Q Consensus 383 i~~g~~~~ivG~~GsGKSTll~~i~g~~~~~~G~i~~~g~~~~v~Q~~~~~~~ti~eni~~~~------~~~~~~~~~~~ 456 (1156)
+++|++++|+||||||||||+++|.|+++|..|. .+++|++|++.++..|++||+.+.. ..+.++..+.+
T Consensus 87 ~~~g~ivgI~G~sGsGKSTL~~~L~gll~~~~G~----~~v~~v~qd~~~~~~t~~e~~~~~~~~g~~~~~d~~~~~~~L 162 (312)
T 3aez_A 87 RPVPFIIGVAGSVAVGKSTTARVLQALLARWDHH----PRVDLVTTDGFLYPNAELQRRNLMHRKGFPESYNRRALMRFV 162 (312)
T ss_dssp SCCCEEEEEECCTTSCHHHHHHHHHHHHHTSTTC----CCEEEEEGGGGBCCHHHHHHTTCTTCTTSGGGBCHHHHHHHH
T ss_pred CCCCEEEEEECCCCchHHHHHHHHHhhccccCCC----CeEEEEecCccCCcccHHHHHHHHHhcCCChHHHHHHHHHHH
Confidence 8999999999999999999999999999998775 4689999999988779999997532 13455666666
Q ss_pred HHhCCchhhhhCCCCCccccccCCCCCCHHHHHHHHHHHhhccCCCeeeeeCCCCCcCH
Q 037346 457 EACSLKKDLEVLPFGDQTIIGERGINLSGGQKQRIQIARPLYQDADIFLLDDPFSPVDD 515 (1156)
Q Consensus 457 ~~~~l~~~~~~~~~g~~t~v~~~g~~LSgGqkqRi~lAral~~~~~illlDep~s~lD~ 515 (1156)
+..+ . |.. ......|||||+||+++|||++.+|+|+|||||++.+|+
T Consensus 163 ~~l~-~--------~~~---~~~~~~lS~G~~qRv~~a~al~~~p~ilIlDep~~~~d~ 209 (312)
T 3aez_A 163 TSVK-S--------GSD---YACAPVYSHLHYDIIPGAEQVVRHPDILILEGLNVLQTG 209 (312)
T ss_dssp HHHH-T--------TCS---CEEEEEEETTTTEEEEEEEEEECSCSEEEEECTTTTCCC
T ss_pred HHhC-C--------Ccc---cCCcccCChhhhhhhhhHHHhccCCCEEEECCccccCCc
Confidence 6554 1 111 112357999999999999999999999999999999986
|
| >3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032} | Back alignment and structure |
|---|
Probab=99.79 E-value=1.5e-20 Score=199.31 Aligned_cols=144 Identities=18% Similarity=0.101 Sum_probs=92.6
Q ss_pred cCCCCceeeCCCCCCHHHHHHHHhhcccCCCceEEEcCeeCCCCChHHHhhcCeeeccccccccccchhcc-CCCC----
Q 037346 958 APNLPLVLRGRTGSGKSTLIQTLFRIVESTAGHILIDGKDISLIGLHDLRTRLSIIPQDPTMFEGTTRSNL-DPLE---- 1032 (1156)
Q Consensus 958 ~~~~~~vL~G~SGsGKSTL~~lL~rl~~p~~G~I~idG~di~~i~~~~LR~~i~~VpQdp~LF~gTIr~Nl-~~~~---- 1032 (1156)
.+++.++|.||||||||||+++|+|+ +|++|+|. +.++. .+...+|+++++|||++ ++|+ .+..
T Consensus 20 ~~Ge~~~liG~nGsGKSTLl~~l~Gl-~p~~G~I~--~~~~~-~~~~~~~~~ig~v~q~~-------~enl~~~~~~~~~ 88 (208)
T 3b85_A 20 DTNTIVFGLGPAGSGKTYLAMAKAVQ-ALQSKQVS--RIILT-RPAVEAGEKLGFLPGTL-------NEKIDPYLRPLHD 88 (208)
T ss_dssp HHCSEEEEECCTTSSTTHHHHHHHHH-HHHTTSCS--EEEEE-ECSCCTTCCCCSSCC-------------CTTTHHHHH
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcC-CCcCCeee--eEEec-CCchhhhcceEEecCCH-------HHHHHHHHHHHHH
Confidence 45667789999999999999999999 99999994 33333 23335688999999998 5665 2210
Q ss_pred ----CCCHHHHHHHHHHcCCChHHHhhcCCccccccccccCCCEEEEecCCcCCCHHHHHHHHHHHHHhcCCceEEEeec
Q 037346 1033 ----EHADEQIWEALDKCQLGDEVRKKKGKLDSQGRVLLKKSKVLVLDEATASVDTATDNQIQQTLRQHFSDCTVVTIAH 1108 (1156)
Q Consensus 1033 ----~~~deei~~al~~~~l~~~i~~lp~gl~s~ARALLr~~~ILiLDEaTS~LD~~te~~I~~~l~~~~~~~TvI~IaH 1108 (1156)
....+++.++++. ++. ...--..||||+.+|+|||||||||+ +...+.+.|+++.+++|+| |||
T Consensus 89 ~~~~~~~~~~~~~~l~~-glG------q~qrv~lAraL~~~p~lllLDEPts~----~~~~l~~~l~~l~~g~tii-vtH 156 (208)
T 3b85_A 89 ALRDMVEPEVIPKLMEA-GIV------EVAPLAYMRGRTLNDAFVILDEAQNT----TPAQMKMFLTRLGFGSKMV-VTG 156 (208)
T ss_dssp HHTTTSCTTHHHHHHHT-TSE------EEEEGGGGTTCCBCSEEEEECSGGGC----CHHHHHHHHTTBCTTCEEE-EEE
T ss_pred HHHHhccHHHHHHHHHh-CCc------hHHHHHHHHHHhcCCCEEEEeCCccc----cHHHHHHHHHHhcCCCEEE-EEC
Confidence 0122345555555 440 00111339999999999999999999 8888999998874578999 999
Q ss_pred CcccccccCEEEEEeCcEE
Q 037346 1109 RITSVLDSAMVLLLNHGLI 1127 (1156)
Q Consensus 1109 rl~ti~~~D~I~Vl~~G~I 1127 (1156)
+++.+. ++...++|..
T Consensus 157 d~~~~~---~~~~~~~G~~ 172 (208)
T 3b85_A 157 DITQVD---LPGGQKSGLR 172 (208)
T ss_dssp C---------------CCH
T ss_pred CHHHHh---CcCCCCCcHH
Confidence 988654 4555667754
|
| >2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium} | Back alignment and structure |
|---|
Probab=99.77 E-value=6.6e-21 Score=224.16 Aligned_cols=180 Identities=16% Similarity=0.088 Sum_probs=142.0
Q ss_pred ccEEEeeeEEEeCCCCCCCccccceEEeeCCeEEEEEcCCCCChHHHHHHHhCCCCCCCcEEEEcCe-------------
Q 037346 356 TAIEIIDGSFSWDFSSPNPTLRNINLKVFHGMRVAVCGTVGSGKSSCLSCILGGVPKESGIIRLCGT------------- 422 (1156)
Q Consensus 356 ~~i~~~~~~f~~~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKSTll~~i~g~~~~~~G~i~~~g~------------- 422 (1156)
..++++|+++.|.. +..+|+++ |+|.+|++++|+||||||||||+++|+|+.+|+.|.|.++|.
T Consensus 130 ~~l~~~~v~~~~~t--g~~vld~v-l~i~~Gq~~~IvG~sGsGKSTLl~~Iag~~~~~~G~i~~~G~r~~ev~~~~~~~~ 206 (438)
T 2dpy_A 130 NPLQRTPIEHVLDT--GVRAINAL-LTVGRGQRMGLFAGSGVGKSVLLGMMARYTRADVIVVGLIGERGREVKDFIENIL 206 (438)
T ss_dssp CTTTSCCCCSBCCC--SCHHHHHH-SCCBTTCEEEEEECTTSSHHHHHHHHHHHSCCSEEEEEEESCCHHHHHHHHHTTT
T ss_pred CceEEeccceecCC--CceEEeee-EEecCCCEEEEECCCCCCHHHHHHHHhcccCCCeEEEEEeceecHHHHHHHHhhc
Confidence 45889999999963 35799999 999999999999999999999999999999999999999874
Q ss_pred --------EEEEecC--CcCCCccHHHHhhcCCCCCHHHHHHHHHHhCCchhhhhCCCCCccccccCCCCCCHHHHHHHH
Q 037346 423 --------KAYVAQS--PWIQSGKIEENILFGKEMDRERYERVLEACSLKKDLEVLPFGDQTIIGERGINLSGGQKQRIQ 492 (1156)
Q Consensus 423 --------~~~v~Q~--~~~~~~ti~eni~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~t~v~~~g~~LSgGqkqRi~ 492 (1156)
++|++|+ |.....|+.+|+.+.. +|.. ..+ .+... +=+....||||| |||+
T Consensus 207 ~~~~l~r~i~~v~q~~~~~~~~~~v~~~~~~~a-----e~~~---~~~--~~v~~--------~ld~l~~lS~g~-qrvs 267 (438)
T 2dpy_A 207 GPDGRARSVVIAAPADVSPLLRMQGAAYATRIA-----EDFR---DRG--QHVLL--------IMDSLTRYAMAQ-REIA 267 (438)
T ss_dssp HHHHHHTEEEEEECTTSCHHHHHHHHHHHHHHH-----HHHH---TTT--CEEEE--------EEECHHHHHHHH-HHHH
T ss_pred cccccCceEEEEECCCCCHHHHHHHHHHHHHHH-----HHHH---hCC--CCHHH--------HHHhHHHHHHHH-HHHH
Confidence 5899995 3344569999987642 1211 001 11100 012356799999 9999
Q ss_pred HHHhhccCCCeeeeeCCCCCcCHHHHHHHHHHHHh--c---C-CC-----EEEEEccCCCccccCCEEEEEeCCeEEEcc
Q 037346 493 IARPLYQDADIFLLDDPFSPVDDHTGAHLFKFCWV--S---S-SK-----TVIYATHQVEFLPAADLILVIKDGKITQAG 561 (1156)
Q Consensus 493 lAral~~~~~illlDep~s~lD~~~~~~i~~~~~~--~---~-~~-----tvi~vtH~~~~~~~~d~i~~l~~G~i~~~g 561 (1156)
|| +.+|++ |++||+.+...+.+.+.. . + |+ |++++|||++ .+.||++++|.+|+|+.+|
T Consensus 268 lA---l~~p~~------t~glD~~~~~~l~~ll~r~~~~~~~~GsiT~~~tVlv~tHdl~-~~iad~v~~l~dG~Ivl~~ 337 (438)
T 2dpy_A 268 LA---IGEPPA------TKGYPPSVFAKLPALVERAGNGIHGGGSITAFYTVLTEGDDQQ-DPIADSARAILDGHIVLSR 337 (438)
T ss_dssp HH---TTCCCC------SSSCCTTHHHHHHHHHTTCSCCSTTSCEEEEEEEEECSSSCSC-CHHHHHHHHHSSEEEEECH
T ss_pred HH---hCCCcc------cccCCHHHHHHHHHHHHHHHhccCCCCcccceeEEEEeCCCcc-chhhceEEEEeCcEEEEeC
Confidence 99 788887 999999999988776543 2 2 54 9999999999 6679999999999999998
Q ss_pred ChHHHH
Q 037346 562 KYSDIL 567 (1156)
Q Consensus 562 ~~~~l~ 567 (1156)
++.++.
T Consensus 338 ~~~~~~ 343 (438)
T 2dpy_A 338 RLAEAG 343 (438)
T ss_dssp HHHHTT
T ss_pred CHHHcc
Confidence 876653
|
| >2o5v_A DNA replication and repair protein RECF; ABC ATPase, walker A motif, P-loop, signature motif, replication/recombination complex; HET: DNA; 1.61A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=99.76 E-value=7.3e-19 Score=201.01 Aligned_cols=81 Identities=20% Similarity=0.249 Sum_probs=73.1
Q ss_pred CCCHHHHHHHHHHHhhc---------cCCCeeeeeCCCCCcCHHHHHHHHHHHHhcCCCEEEEEccCCCccccCCEEEEE
Q 037346 482 NLSGGQKQRIQIARPLY---------QDADIFLLDDPFSPVDDHTGAHLFKFCWVSSSKTVIYATHQVEFLPAADLILVI 552 (1156)
Q Consensus 482 ~LSgGqkqRi~lAral~---------~~~~illlDep~s~lD~~~~~~i~~~~~~~~~~tvi~vtH~~~~~~~~d~i~~l 552 (1156)
.||||||||++|||+|+ .+|+|+|||||||+||+..+..+++.+.... .|+|++|| .+. .||++++|
T Consensus 265 ~lS~Gqqq~l~lA~~La~~~l~~~~~~~p~iLLLDEp~s~LD~~~~~~l~~~l~~~~-qt~i~~th-~~~--~~~~i~~l 340 (359)
T 2o5v_A 265 YASRGEGRTVALALRRAELELLREKFGEDPVLLLDDFTAELDPHRRQYLLDLAASVP-QAIVTGTE-LAP--GAALTLRA 340 (359)
T ss_dssp HCCHHHHHHHHHHHHHHHHHHHHHHHSSCCEEEECCGGGCCCHHHHHHHHHHHHHSS-EEEEEESS-CCT--TCSEEEEE
T ss_pred hCCHHHHHHHHHHHHHHHhhhhhhccCCCCEEEEeCccccCCHHHHHHHHHHHHhcC-cEEEEEEe-ccc--cCCEEEEE
Confidence 69999999999999999 8999999999999999999999988765444 89999999 444 89999999
Q ss_pred eCCeEEEccChHHH
Q 037346 553 KDGKITQAGKYSDI 566 (1156)
Q Consensus 553 ~~G~i~~~g~~~~l 566 (1156)
++|+++..|+++++
T Consensus 341 ~~G~i~~~g~~~~~ 354 (359)
T 2o5v_A 341 QAGRFTPVADEEMQ 354 (359)
T ss_dssp ETTEEEECCCTTTS
T ss_pred ECCEEEecCCHHHH
Confidence 99999999988765
|
| >3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=99.75 E-value=2.2e-20 Score=209.46 Aligned_cols=161 Identities=12% Similarity=0.057 Sum_probs=115.7
Q ss_pred ccceEEeeCCeEEEEEcCCCCChHHHHHHHhCCCCCCCcEEEEcC-------------------eEEEEecCCc-CC-Cc
Q 037346 377 RNINLKVFHGMRVAVCGTVGSGKSSCLSCILGGVPKESGIIRLCG-------------------TKAYVAQSPW-IQ-SG 435 (1156)
Q Consensus 377 ~~i~l~i~~g~~~~ivG~~GsGKSTll~~i~g~~~~~~G~i~~~g-------------------~~~~v~Q~~~-~~-~~ 435 (1156)
+++||++++|++++|+|||||||||+++.|+|.++|++|+|.++| .++|++|++. ++ ..
T Consensus 91 ~~l~~~~~~g~vi~lvG~nGsGKTTll~~Lag~l~~~~g~V~l~g~d~~r~~a~~ql~~~~~~~~i~~v~q~~~~~~~~~ 170 (302)
T 3b9q_A 91 TELQLGFRKPAVIMIVGVNGGGKTTSLGKLAHRLKNEGTKVLMAAGDTFRAAASDQLEIWAERTGCEIVVAEGDKAKAAT 170 (302)
T ss_dssp CSCCCCSSSCEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEECCCCSCHHHHHHHHHHHHHHTCEEECCC--CCCHHH
T ss_pred cccccccCCCcEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEEeecccchhHHHHHHHHHHhcCceEEEecCCccCHHH
Confidence 467889999999999999999999999999999999999999876 2689999987 55 45
Q ss_pred cHHHHhhcCCCCCHHHHHHHHHHhCCchhhhhCCCCCccccccCCCCCCHHHHHHHHHHHhhccCCC--eeeeeCCCCCc
Q 037346 436 KIEENILFGKEMDRERYERVLEACSLKKDLEVLPFGDQTIIGERGINLSGGQKQRIQIARPLYQDAD--IFLLDDPFSPV 513 (1156)
Q Consensus 436 ti~eni~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~t~v~~~g~~LSgGqkqRi~lAral~~~~~--illlDep~s~l 513 (1156)
|++||+.++.... .. ...++. .|..........+|| |||++||||+..+|+ +++|| ||+++
T Consensus 171 ~v~e~l~~~~~~~----------~d-~~lldt--~gl~~~~~~~~~eLS---kqr~~iaral~~~P~e~lLvLD-ptsgl 233 (302)
T 3b9q_A 171 VLSKAVKRGKEEG----------YD-VVLCDT--SGRLHTNYSLMEELI---ACKKAVGKIVSGAPNEILLVLD-GNTGL 233 (302)
T ss_dssp HHHHHHHHHHHTT----------CS-EEEECC--CCCSSCCHHHHHHHH---HHHHHHHTTSTTCCSEEEEEEE-GGGGG
T ss_pred HHHHHHHHHHHcC----------Cc-chHHhc--CCCCcchhHHHHHHH---HHHHHHHHhhccCCCeeEEEEe-CCCCc
Confidence 9999997642100 00 001111 111111122234688 999999999999999 99999 99999
Q ss_pred CHHHHHHHHHHHHhcCCCEEEEEccCCC---------ccc-cCCEEEEEeCCeE
Q 037346 514 DDHTGAHLFKFCWVSSSKTVIYATHQVE---------FLP-AADLILVIKDGKI 557 (1156)
Q Consensus 514 D~~~~~~i~~~~~~~~~~tvi~vtH~~~---------~~~-~~d~i~~l~~G~i 557 (1156)
|+..... ......|.|+|++||.-+ .+. ..+.|.++.+|+.
T Consensus 234 D~~~~~~---~~~~~~g~t~iiiThlD~~~~~g~~l~~~~~~~~pi~~i~~Ge~ 284 (302)
T 3b9q_A 234 NMLPQAR---EFNEVVGITGLILTKLDGSARGGCVVSVVEELGIPVKFIGVGEA 284 (302)
T ss_dssp GGHHHHH---HHHHHTCCCEEEEECCSSCSCTHHHHHHHHHHCCCEEEEECSSS
T ss_pred CHHHHHH---HHHHhcCCCEEEEeCCCCCCccChheehHHHHCCCEEEEeCCCC
Confidence 9986532 222245889999999322 222 2578888888864
|
| >1e69_A Chromosome segregation SMC protein; structural maintenance of chromosomes, coiled coil; 3.1A {Thermotoga maritima} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=99.74 E-value=2.6e-18 Score=195.69 Aligned_cols=183 Identities=16% Similarity=0.254 Sum_probs=123.6
Q ss_pred EEEEEcCCCCceeeCCCCCCHHHHHHHHhhc-------------------------------------------------
Q 037346 953 LQVRYAPNLPLVLRGRTGSGKSTLIQTLFRI------------------------------------------------- 983 (1156)
Q Consensus 953 Vsf~Y~~~~~~vL~G~SGsGKSTL~~lL~rl------------------------------------------------- 983 (1156)
+++...++ -.+|.|+||||||||+.+|..+
T Consensus 18 ~~l~~~~g-~~~i~G~NGsGKS~ll~ai~~llg~~~~~s~r~~~~~~li~~g~~~~~~~~~~~v~~~f~~~~~~~~i~r~ 96 (322)
T 1e69_A 18 SLIGFSDR-VTAIVGPNGSGKSNIIDAIKWVFGEQSKKELRASEKFDMIFAGSENLPPAGSAYVELVFEENGEEITVARE 96 (322)
T ss_dssp EEEECCSS-EEEEECCTTTCSTHHHHHHHHTSCC----------CCTTBCCCBTTBCCCSEEEEEEEEESSSCEEEEEEE
T ss_pred eEEecCCC-cEEEECCCCCcHHHHHHHHHHHhCCCchhhcccccHHHhhccCccCCCCCceEEEEEEEEeCCeEEEEEEE
Confidence 34444555 4588899999999999999843
Q ss_pred -ccCCCceEEEcCeeCCCCChHHHhhcCeeeccccccc-cccchhccCCCCC--------C--------CHHHHHHHHHH
Q 037346 984 -VESTAGHILIDGKDISLIGLHDLRTRLSIIPQDPTMF-EGTTRSNLDPLEE--------H--------ADEQIWEALDK 1045 (1156)
Q Consensus 984 -~~p~~G~I~idG~di~~i~~~~LR~~i~~VpQdp~LF-~gTIr~Nl~~~~~--------~--------~deei~~al~~ 1045 (1156)
+.+.+|.+++||.+++.-++..++..+++.||+..++ .|++.+|+..... . +-+++.+.+..
T Consensus 97 ~~~~~~~~~~ing~~~~~~~~~~~~~~~g~~~~~~~lv~qg~i~~~~~~~p~~rr~~ld~~~~~~~~~~~y~rv~e~~~~ 176 (322)
T 1e69_A 97 LKRTGENTYYLNGSPVRLKDIRDRFAGTGLGVDFYSIVGQGQIDRIVNASPEELRLESSKHPTSLVPRGSYQRVNESFNR 176 (322)
T ss_dssp EETTSCEEEEETTEEECHHHHHHHTTTSSTTTTCCSEEEHHHHHHHHTC---------------------CHHHHHHHHH
T ss_pred EEcCCceEEEECCcCccHHHHHHHHHHcCCChhheeeEehhhHHHHHhccHHHHHHHHHHhhhhHHHHHHHHHHHHHHHH
Confidence 2344679999999987666777777899999998765 8888888753211 0 00112222111
Q ss_pred c------------CCChH-HHhhcCCc----------c------cc--------ccccc----cCCCEEEEecCCcCCCH
Q 037346 1046 C------------QLGDE-VRKKKGKL----------D------SQ--------GRVLL----KKSKVLVLDEATASVDT 1084 (1156)
Q Consensus 1046 ~------------~l~~~-i~~lp~gl----------~------s~--------ARALL----r~~~ILiLDEaTS~LD~ 1084 (1156)
. .+... ...++.|+ + |+ ||||. ++|+|||||||||+||+
T Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~~~~~~~~~~~~~lS~Gq~q~v~ia~~l~~~~~~~~~~lllDEp~~~LD~ 256 (322)
T 1e69_A 177 FISLLFFGGEGRLNIVSEAKSILDAGFEISIRKPGRRDQKLSLLSGGEKALVGLALLFALMEIKPSPFYVLDEVDSPLDD 256 (322)
T ss_dssp HHHHHHTSCEEEC--------------CCEEECTTSCCCBGGGSCHHHHHHHHHHHHHHHTTTSCCSEEEEESCCSSCCH
T ss_pred HHHHhcCCceEEEEeeccccccccCCeEEEEecCccccCchhhCCHHHHHHHHHHHHHHHhccCCCCEEEEeCCCCCCCH
Confidence 0 00000 00111111 1 11 78885 78999999999999999
Q ss_pred HHHHHHHHHHHHhcCCceEEEeecCcccccccCEE--EEEeCcEE-eeecChhHH
Q 037346 1085 ATDNQIQQTLRQHFSDCTVVTIAHRITSVLDSAMV--LLLNHGLI-KEYDSPTKL 1136 (1156)
Q Consensus 1085 ~te~~I~~~l~~~~~~~TvI~IaHrl~ti~~~D~I--~Vl~~G~I-vE~G~~~eL 1136 (1156)
.+.+.+.+.|++..+++|+|+|||+.+.+..||++ ++|++|+. +...+.++.
T Consensus 257 ~~~~~l~~~l~~~~~~~~vi~~tH~~~~~~~~d~~~~v~~~~g~s~~~~~~~~~~ 311 (322)
T 1e69_A 257 YNAERFKRLLKENSKHTQFIVITHNKIVMEAADLLHGVTMVNGVSAIVPVEVEKI 311 (322)
T ss_dssp HHHHHHHHHHHHHTTTSEEEEECCCTTGGGGCSEEEEEEESSSCEEEEECCC---
T ss_pred HHHHHHHHHHHHhcCCCeEEEEECCHHHHhhCceEEEEEEeCCEEEEEEEEcchh
Confidence 99999999999987788999999999888889987 88888854 344444443
|
| >1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=99.74 E-value=1.2e-20 Score=199.51 Aligned_cols=151 Identities=18% Similarity=0.219 Sum_probs=121.5
Q ss_pred CCCCceeeCCCCCCHHHHHHHHhhccc-------------CCCceEEEcCeeCCCCChHHHhhcCeeeccccccccccch
Q 037346 959 PNLPLVLRGRTGSGKSTLIQTLFRIVE-------------STAGHILIDGKDISLIGLHDLRTRLSIIPQDPTMFEGTTR 1025 (1156)
Q Consensus 959 ~~~~~vL~G~SGsGKSTL~~lL~rl~~-------------p~~G~I~idG~di~~i~~~~LR~~i~~VpQdp~LF~gTIr 1025 (1156)
++..++|.||||||||||+++|.|+++ |..|. +||+++..++.+.+|+.+ +|++++|.+|++
T Consensus 3 ~g~~i~lvGpsGaGKSTLl~~L~~~~~~~~~~~v~~ttr~~~~g~--~~g~~~~~~~~~~~~~~i---~~~~~l~~~~~~ 77 (198)
T 1lvg_A 3 GPRPVVLSGPSGAGKSTLLKKLFQEHSSIFGFSVSHTTRNPRPGE--EDGKDYYFVTREMMQRDI---AAGDFIEHAEFS 77 (198)
T ss_dssp --CCEEEECCTTSSHHHHHHHHHHHHTTTEEECCCEECSCCCTTC--CBTTTBEECCHHHHHHHH---HHTCEEEEEEET
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhCchhceeeeeeeccCCCCcc--cCCceEEEccHHHHHHHH---HcCCCEeeeeec
Confidence 466789999999999999999999986 78898 699999999999999876 899999999999
Q ss_pred hccCCCCCCCHHHHHHHHHHcCCChHHHhhcCCcc------cccc-ccccCCCEEEEecCCcCCCHHHHHHHHHHHHHhc
Q 037346 1026 SNLDPLEEHADEQIWEALDKCQLGDEVRKKKGKLD------SQGR-VLLKKSKVLVLDEATASVDTATDNQIQQTLRQHF 1098 (1156)
Q Consensus 1026 ~Nl~~~~~~~deei~~al~~~~l~~~i~~lp~gl~------s~AR-ALLr~~~ILiLDEaTS~LD~~te~~I~~~l~~~~ 1098 (1156)
+|+ ++ .++++++++++.....-+ .-.|.|+. -.+| +++++|++++|||+|+++|.+|++.|++.|.+..
T Consensus 78 ~n~-~g--~~~~~i~~~~~~~~~~~~-~~~~~g~~~~~~~~~~~~~~~l~~p~~~ilde~~~~~d~~~e~~i~~~l~~~~ 153 (198)
T 1lvg_A 78 GNL-YG--TSKEAVRAVQAMNRICVL-DVDLQGVRSIKKTDLCPIYIFVQPPSLDVLEQRLRLRNTETEESLAKRLAAAR 153 (198)
T ss_dssp TEE-EE--EEHHHHHHHHHTTCEEEE-ECCHHHHHHHTTSSCCCEEEEEECSCHHHHHHHHHHHTCSCHHHHHHHHHHHH
T ss_pred Ccc-CC--CCHHHHHHHHHcCCcEEE-ECCHHHHHHHHhcCCCcEEEEEeCCCHHHHHHHHHhcCCCCHHHHHHHHHHHH
Confidence 998 43 267889999986432111 01122221 1366 8999999999999999999999999999998765
Q ss_pred CCceEEEeecCcccccccCEEEEEeC
Q 037346 1099 SDCTVVTIAHRITSVLDSAMVLLLNH 1124 (1156)
Q Consensus 1099 ~~~TvI~IaHrl~ti~~~D~I~Vl~~ 1124 (1156)
++ +.++| ++ ..||+|+|+++
T Consensus 154 ~~---~~~a~--~~-~~~D~iivnd~ 173 (198)
T 1lvg_A 154 TD---MESSK--EP-GLFDLVIINDD 173 (198)
T ss_dssp HH---TTGGG--ST-TTCSEEEECSS
T ss_pred HH---HHHhh--cc-CCceEEEECCC
Confidence 44 47788 55 88999999985
|
| >3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.74 E-value=4.5e-20 Score=203.94 Aligned_cols=135 Identities=13% Similarity=0.149 Sum_probs=89.4
Q ss_pred EEEEEcCCCCChHHHHHHHhCCCCCCCcEEEEcC----------eEEEEecCCcCCC-ccHHHHhhcCCCCC----HHHH
Q 037346 388 RVAVCGTVGSGKSSCLSCILGGVPKESGIIRLCG----------TKAYVAQSPWIQS-GKIEENILFGKEMD----RERY 452 (1156)
Q Consensus 388 ~~~ivG~~GsGKSTll~~i~g~~~~~~G~i~~~g----------~~~~v~Q~~~~~~-~ti~eni~~~~~~~----~~~~ 452 (1156)
.++|+||||||||||+++|+|...|++|+|.++| .++|++|++.++. .||.||+.||.... .+..
T Consensus 4 ~v~lvG~nGaGKSTLln~L~g~~~~~~G~i~~~g~~i~~~~~~~~i~~v~q~~~~~~~ltv~d~~~~g~~~~~~~~~~~i 83 (270)
T 3sop_A 4 NIMVVGQSGLGKSTLVNTLFKSQVSRKASSWNREEKIPKTVEIKAIGHVIEEGGVKMKLTVIDTPGFGDQINNENCWEPI 83 (270)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHC------------CCCCCSCCEEEESCC----CCEEEEECCCC--CCSBCTTCSHHH
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCCCCccccCCcccCcceeeeeeEEEeecCCCcCCceEEechhhhhhcccHHHHHHH
Confidence 5899999999999999999999999999999876 3799999998765 49999999986532 1223
Q ss_pred HHHHHHhCCchhhhhCCCCCccccccCCCCCCHHHHHHHHHHHhhccCCCeeeeeCCCCCcCHHHHHHHHHHHHhcCCCE
Q 037346 453 ERVLEACSLKKDLEVLPFGDQTIIGERGINLSGGQKQRIQIARPLYQDADIFLLDDPFSPVDDHTGAHLFKFCWVSSSKT 532 (1156)
Q Consensus 453 ~~~~~~~~l~~~~~~~~~g~~t~v~~~g~~LSgGqkqRi~lAral~~~~~illlDep~s~lD~~~~~~i~~~~~~~~~~t 532 (1156)
.+.++ ......+ ..+||||||||+++|||+.. +|+||||+++||+...+ +++.+. .. .+
T Consensus 84 ~~~~~----~~~~~~~-----------~~~LS~G~~qrv~iaRal~~---lllldep~~gL~~lD~~-~l~~L~-~~-~~ 142 (270)
T 3sop_A 84 EKYIN----EQYEKFL-----------KEEVNIARKKRIPDTRVHCC---LYFISPTGHSLRPLDLE-FMKHLS-KV-VN 142 (270)
T ss_dssp HHHHH----HHHHHHH-----------HHHSCTTCCSSCCCCSCCEE---EEEECCCSSSCCHHHHH-HHHHHH-TT-SE
T ss_pred HHHHH----HHHHhhh-----------HHhcCcccchhhhhheeeee---eEEEecCCCcCCHHHHH-HHHHHH-hc-Cc
Confidence 33332 1111111 23799999999999999886 99999999999998743 444442 33 89
Q ss_pred EEEEccCCCcc
Q 037346 533 VIYATHQVEFL 543 (1156)
Q Consensus 533 vi~vtH~~~~~ 543 (1156)
+|+|.|..+.+
T Consensus 143 vI~Vi~K~D~l 153 (270)
T 3sop_A 143 IIPVIAKADTM 153 (270)
T ss_dssp EEEEETTGGGS
T ss_pred EEEEEeccccC
Confidence 99998876554
|
| >1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=99.74 E-value=7.8e-20 Score=196.20 Aligned_cols=163 Identities=18% Similarity=0.161 Sum_probs=115.8
Q ss_pred EEEEEEEEEEcCCCCceeeCCCCCCHHHHHHHHhhcccCCCceEEEcCeeCCCCCh-HHHhhcCeeecccccccc-----
Q 037346 948 VNIRHLQVRYAPNLPLVLRGRTGSGKSTLIQTLFRIVESTAGHILIDGKDISLIGL-HDLRTRLSIIPQDPTMFE----- 1021 (1156)
Q Consensus 948 I~~~~Vsf~Y~~~~~~vL~G~SGsGKSTL~~lL~rl~~p~~G~I~idG~di~~i~~-~~LR~~i~~VpQdp~LF~----- 1021 (1156)
-.++||+|..++++.++|.||||||||||+++|.|++ | |+|.+ |+++.+.+. ...|+.++|++|++.+|.
T Consensus 11 ~~l~~isl~i~~G~~~~lvGpsGsGKSTLl~~L~g~~-p--G~i~~-g~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~ 86 (218)
T 1z6g_A 11 SSGLVPRGSMNNIYPLVICGPSGVGKGTLIKKLLNEF-P--NYFYF-SVSCTTRKKREKEKEGVDYYFIDKTIFEDKLKN 86 (218)
T ss_dssp -----------CCCCEEEECSTTSSHHHHHHHHHHHS-T--TTEEE-CCCEECSCCCSSCCBTTTBEECCHHHHHHHHHT
T ss_pred ccccCCceecCCCCEEEEECCCCCCHHHHHHHHHhhC-C--CcEEE-eecccCCCCCcccccCCeEEECCHHHHHHhhhc
Confidence 3689999999999999999999999999999999999 6 99999 888765432 345788999999987664
Q ss_pred ------ccchhccCCCCCCCHHHHHHHHHHcCCCh------HHHhhcCCc--cccccccccCCCEEEEecCCcCCCHHHH
Q 037346 1022 ------GTTRSNLDPLEEHADEQIWEALDKCQLGD------EVRKKKGKL--DSQGRVLLKKSKVLVLDEATASVDTATD 1087 (1156)
Q Consensus 1022 ------gTIr~Nl~~~~~~~deei~~al~~~~l~~------~i~~lp~gl--~s~ARALLr~~~ILiLDEaTS~LD~~te 1087 (1156)
+++++|. ++ ..++++.++++.....- -.+..-..+ ...+|+++++|++++|||||+++|.+++
T Consensus 87 ~~~l~~~~~~~~~-~g--~~~~~i~~~l~~~~~~il~~~lsggq~qR~~i~~~~~~~~ll~~~~~~~Lde~~~~~d~~~~ 163 (218)
T 1z6g_A 87 EDFLEYDNYANNF-YG--TLKSEYDKAKEQNKICLFEMNINGVKQLKKSTHIKNALYIFIKPPSTDVLLSRLLTRNTENQ 163 (218)
T ss_dssp TCEEEEEEETTEE-EE--EEHHHHHHHHHTTCEEEEEECHHHHHHHTTCSSCCSCEEEEEECSCHHHHHHHHHHTCCCCH
T ss_pred cchhhhhhccccc-CC--CcHHHHHHHHhCCCcEEEEecHHHHHHHHHHhcCCCcEEEEEeCcCHHHHHHHHHhcCCCCH
Confidence 3444442 11 23566777777654310 011111122 2238999999999999999999999999
Q ss_pred HHHHHHHHHhcCCceEEEeecCcccccccCEEEEEeC
Q 037346 1088 NQIQQTLRQHFSDCTVVTIAHRITSVLDSAMVLLLNH 1124 (1156)
Q Consensus 1088 ~~I~~~l~~~~~~~TvI~IaHrl~ti~~~D~I~Vl~~ 1124 (1156)
+.|++.+.+..+++| ++| +..||.|+|+++
T Consensus 164 ~~i~~~l~~~~~~~~---~~h----~~~~d~iiv~~~ 193 (218)
T 1z6g_A 164 EQIQKRMEQLNIELH---EAN----LLNFNLSIINDD 193 (218)
T ss_dssp HHHHHHHHHHHHHHH---HHT----TSCCSEEEECSS
T ss_pred HHHHHHHHHHHHHHH---hhc----ccCCCEEEECCC
Confidence 999999988777777 788 688999999876
|
| >3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B | Back alignment and structure |
|---|
Probab=99.72 E-value=2.7e-17 Score=188.57 Aligned_cols=79 Identities=25% Similarity=0.382 Sum_probs=67.8
Q ss_pred cCCCCCCHHHHH------HHHHHHhhccCCCeeeeeCCCCCcCHHHHHHHHHHHHh--cCCCEEEEEccCCCccccCCEE
Q 037346 478 ERGINLSGGQKQ------RIQIARPLYQDADIFLLDDPFSPVDDHTGAHLFKFCWV--SSSKTVIYATHQVEFLPAADLI 549 (1156)
Q Consensus 478 ~~g~~LSgGqkq------Ri~lAral~~~~~illlDep~s~lD~~~~~~i~~~~~~--~~~~tvi~vtH~~~~~~~~d~i 549 (1156)
.....||||||| |+++|||+..+|++|||||||++||+.....+++.+.. ..++|+|+|||+.+....||+|
T Consensus 244 ~~~~~lS~G~~~~~~la~~l~~a~~l~~~p~~lllDEp~~~LD~~~~~~l~~~l~~~~~~~~~vi~~sH~~~~~~~~d~~ 323 (339)
T 3qkt_A 244 RPLTFLSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLKKIPQVILVSHDEELKDAADHV 323 (339)
T ss_dssp ECGGGSCHHHHHHHHHHHHHHHHHHTTTTTCEEEEECCCTTCCHHHHHHHHHHHHHTGGGSSEEEEEESCGGGGGGCSEE
T ss_pred CChHHCCHHHHHHHHHHHHHHHHHHhcCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEEChHHHHHhCCEE
Confidence 345789999999 67888999999999999999999999999998876643 4578999999998777789999
Q ss_pred EEEe--CCe
Q 037346 550 LVIK--DGK 556 (1156)
Q Consensus 550 ~~l~--~G~ 556 (1156)
++|+ +|.
T Consensus 324 ~~l~~~~g~ 332 (339)
T 3qkt_A 324 IRISLENGS 332 (339)
T ss_dssp EEEEEETTE
T ss_pred EEEEecCCc
Confidence 9995 554
|
| >2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=99.71 E-value=1.8e-19 Score=205.61 Aligned_cols=161 Identities=12% Similarity=0.079 Sum_probs=116.5
Q ss_pred ccceEEeeCCeEEEEEcCCCCChHHHHHHHhCCCCCCCcEEEEcC-------------------eEEEEecCCc-CC-Cc
Q 037346 377 RNINLKVFHGMRVAVCGTVGSGKSSCLSCILGGVPKESGIIRLCG-------------------TKAYVAQSPW-IQ-SG 435 (1156)
Q Consensus 377 ~~i~l~i~~g~~~~ivG~~GsGKSTll~~i~g~~~~~~G~i~~~g-------------------~~~~v~Q~~~-~~-~~ 435 (1156)
..+||++++|++++|+|||||||||+++.|+|.++|++|+|.++| .++|++|++. .+ ..
T Consensus 148 ~~l~l~~~~g~vi~lvG~nGsGKTTll~~Lag~l~~~~G~V~l~g~D~~r~~a~eql~~~~~r~~i~~v~q~~~~~~p~~ 227 (359)
T 2og2_A 148 TELQLGFRKPAVIMIVGVNGGGKTTSLGKLAHRLKNEGTKVLMAAGDTFRAAASDQLEIWAERTGCEIVVAEGDKAKAAT 227 (359)
T ss_dssp CSCCCCSSSSEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEECCCCSCHHHHHHHHHHHHHHTCEEECCSSSSCCHHH
T ss_pred CCcceecCCCeEEEEEcCCCChHHHHHHHHHhhccccCCEEEEecccccccchhHHHHHHHHhcCeEEEEecccccChhh
Confidence 357888999999999999999999999999999999999999876 2689999986 54 45
Q ss_pred cHHHHhhcCCCCCHHHHHHHHHHhCCchhhhhCCCCCccccccCCCCCCHHHHHHHHHHHhhccCCC--eeeeeCCCCCc
Q 037346 436 KIEENILFGKEMDRERYERVLEACSLKKDLEVLPFGDQTIIGERGINLSGGQKQRIQIARPLYQDAD--IFLLDDPFSPV 513 (1156)
Q Consensus 436 ti~eni~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~t~v~~~g~~LSgGqkqRi~lAral~~~~~--illlDep~s~l 513 (1156)
|++||+.++.....+ ..+++.+++ .........+|| |||++||||+..+|+ +|+|| ||+++
T Consensus 228 tv~e~l~~~~~~~~d--~~lldt~Gl-----------~~~~~~~~~eLS---kqr~~iaral~~~P~e~lLvLD-pttgl 290 (359)
T 2og2_A 228 VLSKAVKRGKEEGYD--VVLCDTSGR-----------LHTNYSLMEELI---ACKKAVGKIVSGAPNEILLVLD-GNTGL 290 (359)
T ss_dssp HHHHHHHHHHHTTCS--EEEEECCCC-----------SSCCHHHHHHHH---HHHHHHHHHSTTCCSEEEEEEE-GGGGG
T ss_pred hHHHHHHHHHhCCCH--HHHHHhcCC-----------ChhhhhHHHHHH---HHHHHHHHHHhcCCCceEEEEc-CCCCC
Confidence 999999764210000 001111111 111122234688 999999999999999 99999 99999
Q ss_pred CHHHHHHHHHHHHhcCCCEEEEEccCCC---------ccc-cCCEEEEEeCCeE
Q 037346 514 DDHTGAHLFKFCWVSSSKTVIYATHQVE---------FLP-AADLILVIKDGKI 557 (1156)
Q Consensus 514 D~~~~~~i~~~~~~~~~~tvi~vtH~~~---------~~~-~~d~i~~l~~G~i 557 (1156)
|+.....-+ ....|.|+|++||.-+ .+. ..+.|.++..|+.
T Consensus 291 D~~~~~~~~---~~~~g~t~iiiThlD~~~~gG~~lsi~~~~~~pI~~ig~Ge~ 341 (359)
T 2og2_A 291 NMLPQAREF---NEVVGITGLILTKLDGSARGGCVVSVVEELGIPVKFIGVGEA 341 (359)
T ss_dssp GGHHHHHHH---HHHTCCCEEEEESCTTCSCTHHHHHHHHHHCCCEEEEECSSS
T ss_pred CHHHHHHHH---HHhcCCeEEEEecCcccccccHHHHHHHHhCCCEEEEeCCCC
Confidence 998764322 2245889999999322 222 2567888887753
|
| >1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A | Back alignment and structure |
|---|
Probab=99.70 E-value=4.3e-20 Score=196.77 Aligned_cols=164 Identities=15% Similarity=0.082 Sum_probs=99.4
Q ss_pred CCccccceEEeeCCeEEEEEcCCCCChHHHHHHHhCCCCCCCcEEEE---------cCeEEEEecCCcCCC-ccHHHHhh
Q 037346 373 NPTLRNINLKVFHGMRVAVCGTVGSGKSSCLSCILGGVPKESGIIRL---------CGTKAYVAQSPWIQS-GKIEENIL 442 (1156)
Q Consensus 373 ~~~l~~i~l~i~~g~~~~ivG~~GsGKSTll~~i~g~~~~~~G~i~~---------~g~~~~v~Q~~~~~~-~ti~eni~ 442 (1156)
.++++| .++++|++++|+||||||||||+++|+|+++...+.+.+ ...++|++|++..|. .|+.+|+.
T Consensus 9 ~~~~~~--~~i~~Gei~~l~GpnGsGKSTLl~~l~gl~~~i~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~~~~~l~ 86 (207)
T 1znw_A 9 KPTARG--QPAAVGRVVVLSGPSAVGKSTVVRCLRERIPNLHFSVSATTRAPRPGEVDGVDYHFIDPTRFQQLIDQGELL 86 (207)
T ss_dssp ------------CCCEEEEECSTTSSHHHHHHHHHHHSTTCEECCCEESSCCCTTCCBTTTBEECCHHHHHHHHHTTCEE
T ss_pred CcCCCC--CCCCCCCEEEEECCCCCCHHHHHHHHHhhCCceEEcccccccCCcccccCCCeeEecCHHHHHHHHhcCCce
Confidence 467888 799999999999999999999999999998622221111 123689999987654 36666653
Q ss_pred c-----C--C--CCCHHHHHHHHHHhCCchhhhhCCCCCccccccCCCCCCHHHHHHHHHHH---hhccCCCeeeeeCCC
Q 037346 443 F-----G--K--EMDRERYERVLEACSLKKDLEVLPFGDQTIIGERGINLSGGQKQRIQIAR---PLYQDADIFLLDDPF 510 (1156)
Q Consensus 443 ~-----~--~--~~~~~~~~~~~~~~~l~~~~~~~~~g~~t~v~~~g~~LSgGqkqRi~lAr---al~~~~~illlDep~ 510 (1156)
. + . ....+..++.++...- .+. ...+.|.+.++-..++ |++.+|++++|||||
T Consensus 87 ~~~~~~~n~~~~g~~~~~~~~~~~~~~~--~~~-------------~l~~~gl~~~~~~~~~~lS~l~~~p~~~~LDep~ 151 (207)
T 1znw_A 87 EWAEIHGGLHRSGTLAQPVRAAAATGVP--VLI-------------EVDLAGARAIKKTMPEAVTVFLAPPSWQDLQARL 151 (207)
T ss_dssp EEEEEGGGTEEEEEEHHHHHHHHHHTCC--EEE-------------ECCHHHHHHHHHHCTTSEEEEEECSCHHHHHHHH
T ss_pred eehhhcCchhhcCCcHHHHHHHHHcCCe--EEE-------------EeCHHHHHHHHHhcCCcEEEEEECCCHHHHHHHH
Confidence 2 1 0 0122222332222100 000 0123333333333333 899999999999999
Q ss_pred CCc----CHHHHHHHHHHHHh---cCCCEEEEEccCCCccc-cCCEEEEEe
Q 037346 511 SPV----DDHTGAHLFKFCWV---SSSKTVIYATHQVEFLP-AADLILVIK 553 (1156)
Q Consensus 511 s~l----D~~~~~~i~~~~~~---~~~~tvi~vtH~~~~~~-~~d~i~~l~ 553 (1156)
+++ |+..++++.+.+.. ..|.|+|+|||+++.+. .||+|++|.
T Consensus 152 ~~l~~~~d~~~~~~l~~~l~~l~~~~g~tvi~vtHdl~~~~~~~d~i~~l~ 202 (207)
T 1znw_A 152 IGRGTETADVIQRRLDTARIELAAQGDFDKVVVNRRLESACAELVSLLVGT 202 (207)
T ss_dssp HTTSCSCHHHHHHHHHHHHHHHHGGGGSSEEEECSSHHHHHHHHHHHHC--
T ss_pred HhcCCCCHHHHHHHHHHHHHHHhhhccCcEEEECCCHHHHHHHHHHHHHhc
Confidence 998 67777777665432 34789999999999875 599999984
|
| >2o8b_B DNA mismatch repair protein MSH6; DNA damage response, somatic hypermutat protein-DNA complex, DNA mispair, cancer; HET: DNA ADP; 2.75A {Homo sapiens} PDB: 2o8c_B* 2o8d_B* 2o8e_B* 2o8f_B* | Back alignment and structure |
|---|
Probab=99.69 E-value=6.7e-18 Score=216.77 Aligned_cols=169 Identities=11% Similarity=0.045 Sum_probs=118.8
Q ss_pred ccEEEee-----eEEEeCCCCCCCccccceEEeeC-------CeEEEEEcCCCCChHHHHHHHhCCCCCCCcEEEEcCeE
Q 037346 356 TAIEIID-----GSFSWDFSSPNPTLRNINLKVFH-------GMRVAVCGTVGSGKSSCLSCILGGVPKESGIIRLCGTK 423 (1156)
Q Consensus 356 ~~i~~~~-----~~f~~~~~~~~~~l~~i~l~i~~-------g~~~~ivG~~GsGKSTll~~i~g~~~~~~G~i~~~g~~ 423 (1156)
..|+++| +++.|+ ++.++++|++|++++ |++++|+||||||||||+++| |++.+. .++
T Consensus 749 ~~l~i~~~rHP~l~~~~~--~~~~v~ndi~l~~~~~~~~~~~g~i~~ItGpNgsGKSTlLr~i-Gl~~~~-------aqi 818 (1022)
T 2o8b_B 749 PFLELKGSRHPCITKTFF--GDDFIPNDILIGCEEEEQENGKAYCVLVTGPNMGGKSTLMRQA-GLLAVM-------AQM 818 (1022)
T ss_dssp CCEEEEEECCCC--------CCCCCCEEEEESCCCSCC---CCCEEEEECCTTSSHHHHHHHH-HHHHHH-------HTT
T ss_pred ceEEEEeccccEEEEEec--CCceEeeeeeeccccccccCCCCcEEEEECCCCCChHHHHHHH-HHHHHH-------hhe
Confidence 4699999 999884 246899999999987 999999999999999999999 988752 245
Q ss_pred E-EEecCCcCCCccHHHHhhcCCCCCHHHHHHHHHHhCCchhhhhCCCCCccccccCCCCCCHHHHHHHHHHHhhccCCC
Q 037346 424 A-YVAQSPWIQSGKIEENILFGKEMDRERYERVLEACSLKKDLEVLPFGDQTIIGERGINLSGGQKQRIQIARPLYQDAD 502 (1156)
Q Consensus 424 ~-~v~Q~~~~~~~ti~eni~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~t~v~~~g~~LSgGqkqRi~lAral~~~~~ 502 (1156)
| ||||++. ..|+.|+|... .++.+++. .+..++|+|+++ +++|++++.+|+
T Consensus 819 G~~Vpq~~~--~l~v~d~I~~r--------------ig~~d~~~-----------~~~stf~~em~~-~a~al~la~~~s 870 (1022)
T 2o8b_B 819 GCYVPAEVC--RLTPIDRVFTR--------------LGASDRIM-----------SGESTFFVELSE-TASILMHATAHS 870 (1022)
T ss_dssp TCCEESSEE--EECCCSBEEEE--------------CC--------------------CHHHHHHHH-HHHHHHHCCTTC
T ss_pred eEEeccCcC--CCCHHHHHHHH--------------cCCHHHHh-----------hchhhhHHHHHH-HHHHHHhCCCCc
Confidence 5 9999874 45777777421 11211111 123578888775 999999999999
Q ss_pred eeeeeCCCCCcCHHHHHHHHHHHH----hcCCCEEEEEccCCCccc-cCCEEEEEeCCeEE--EccCh
Q 037346 503 IFLLDDPFSPVDDHTGAHLFKFCW----VSSSKTVIYATHQVEFLP-AADLILVIKDGKIT--QAGKY 563 (1156)
Q Consensus 503 illlDep~s~lD~~~~~~i~~~~~----~~~~~tvi~vtH~~~~~~-~~d~i~~l~~G~i~--~~g~~ 563 (1156)
++|||||++|+|+.....+...++ ...|.|+|++||+.+.+. .+|++.++ +|++. +.|..
T Consensus 871 LlLLDEp~~Gtd~~dg~~~~~~il~~L~~~~g~~vl~~TH~~el~~~~~d~~~v~-~g~~~~~~~~~~ 937 (1022)
T 2o8b_B 871 LVLVDELGRGTATFDGTAIANAVVKELAETIKCRTLFSTHYHSLVEDYSQNVAVR-LGHMACMVENEC 937 (1022)
T ss_dssp EEEEECTTTTSCHHHHHHHHHHHHHHHHHTSCCEEEEECCCHHHHHHTSSCSSEE-EEEEEEC-----
T ss_pred EEEEECCCCCCChHHHHHHHHHHHHHHHhcCCCEEEEEeCCHHHHHHhCCcceee-cCeEEEEEecCc
Confidence 999999999999987544322222 233889999999999876 48998886 58886 44543
|
| >2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A* | Back alignment and structure |
|---|
Probab=99.68 E-value=2.3e-18 Score=196.51 Aligned_cols=193 Identities=16% Similarity=0.193 Sum_probs=133.1
Q ss_pred ccEEEeeeEEEeCCCCCCCccccceEEeeCCeEEEEEcCCCCChHHHHHHHhCCCCCCCcEEEEcCeEE----EEecCCc
Q 037346 356 TAIEIIDGSFSWDFSSPNPTLRNINLKVFHGMRVAVCGTVGSGKSSCLSCILGGVPKESGIIRLCGTKA----YVAQSPW 431 (1156)
Q Consensus 356 ~~i~~~~~~f~~~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKSTll~~i~g~~~~~~G~i~~~g~~~----~v~Q~~~ 431 (1156)
..++.+++++.|.. +..+++++ |+|.+|++++|+||||||||||+++|+|..+|+.|.|.+.|.-. .....
T Consensus 44 ~~i~~~~l~~~~~t--g~~ald~l-l~i~~Gq~~gIiG~nGaGKTTLl~~I~g~~~~~~g~i~~~G~~~~ev~~~i~~-- 118 (347)
T 2obl_A 44 DPLLRQVIDQPFIL--GVRAIDGL-LTCGIGQRIGIFAGSGVGKSTLLGMICNGASADIIVLALIGERGREVNEFLAL-- 118 (347)
T ss_dssp CSTTCCCCCSEECC--SCHHHHHH-SCEETTCEEEEEECTTSSHHHHHHHHHHHSCCSEEEEEEESCCHHHHHHHHTT--
T ss_pred CCeeecccceecCC--CCEEEEee-eeecCCCEEEEECCCCCCHHHHHHHHhcCCCCCEEEEEEecccHHHHHHHHHh--
Confidence 35788999999963 35799999 99999999999999999999999999999999999887766310 00000
Q ss_pred CCCccHHHHhhcCCCC---CHHHHHHHHHHhCCchhhhhCCCCCcc-ccccCCCCCCHHHHHHHHHHHhhccCCCeeeee
Q 037346 432 IQSGKIEENILFGKEM---DRERYERVLEACSLKKDLEVLPFGDQT-IIGERGINLSGGQKQRIQIARPLYQDADIFLLD 507 (1156)
Q Consensus 432 ~~~~ti~eni~~~~~~---~~~~~~~~~~~~~l~~~~~~~~~g~~t-~v~~~g~~LSgGqkqRi~lAral~~~~~illlD 507 (1156)
+.....+..+.+.... ..+++......+.+.+.+.. .|.+. .+-+...+||+|| ||+++| ..+|++
T Consensus 119 ~~~~~~~~~v~~~~~~~~~~~~r~~~~~~~~~~ae~~~~--~~~~vl~~ld~~~~lS~g~-r~v~la---l~~p~~---- 188 (347)
T 2obl_A 119 LPQSTLSKCVLVVTTSDRPALERMKAAFTATTIAEYFRD--QGKNVLLMMDSVTRYARAA-RDVGLA---SGEPDV---- 188 (347)
T ss_dssp SCHHHHTTEEEEEECTTSCHHHHHHHHHHHHHHHHHHHT--TTCEEEEEEETHHHHHHHH-HHHHHH---TTCCCC----
T ss_pred hhhhhhhceEEEEECCCCCHHHHHHHHHHHHHHHHHHHh--ccccHHHHHhhHHHHHHHH-HHHHHH---cCCCCc----
Confidence 0000001111111111 12444444444444433221 12111 1114467899999 899999 578876
Q ss_pred CCCCCcCHHHHHHHHHHHHh--c--CCC-----EEEEEccCCCccccCCEEEEEeCCeEEEccChHHH
Q 037346 508 DPFSPVDDHTGAHLFKFCWV--S--SSK-----TVIYATHQVEFLPAADLILVIKDGKITQAGKYSDI 566 (1156)
Q Consensus 508 ep~s~lD~~~~~~i~~~~~~--~--~~~-----tvi~vtH~~~~~~~~d~i~~l~~G~i~~~g~~~~l 566 (1156)
|+|+|+.....+.+.+.. . .|. ||+++|||++ -+.||++++|.+|+|+.+|+.+++
T Consensus 189 --t~Gldp~~~~~l~~ller~~~~~~GsiT~~~tVl~~thdl~-~~i~d~v~~i~dG~Ivl~~~l~~~ 253 (347)
T 2obl_A 189 --RGGFPPSVFSSLPKLLERAGPAPKGSITAIYTVLLESDNVN-DPIGDEVRSILDGHIVLTRELAEE 253 (347)
T ss_dssp --BTTBCHHHHHHHHHHHTTCEECSSSEEEEEEEEECCSSCCC-CHHHHHHHHHCSEEEEBCHHHHTT
T ss_pred --ccCCCHHHHHHHHHHHHHHhCCCCCCeeeEEEEEEeCCCCC-ChhhhheEEeeCcEEEEeCCHHHc
Confidence 999999999888776543 2 366 8999999998 456999999999999998876654
|
| >1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A* | Back alignment and structure |
|---|
Probab=99.67 E-value=5.6e-17 Score=197.10 Aligned_cols=151 Identities=13% Similarity=0.119 Sum_probs=113.7
Q ss_pred eEEeeCCeEEEEEcCCCCChHHHHHHHhCCCCCCCcEEEEcCeEEEEecCCcCCCccHHHHhh-cCCCCCHHHHHHHHHH
Q 037346 380 NLKVFHGMRVAVCGTVGSGKSSCLSCILGGVPKESGIIRLCGTKAYVAQSPWIQSGKIEENIL-FGKEMDRERYERVLEA 458 (1156)
Q Consensus 380 ~l~i~~g~~~~ivG~~GsGKSTll~~i~g~~~~~~G~i~~~g~~~~v~Q~~~~~~~ti~eni~-~~~~~~~~~~~~~~~~ 458 (1156)
+..+++|++++|+|+||||||||++.++|..++. |. ..+.|++|++. ..++++.. +|. +.+. . ..
T Consensus 275 ~g~i~~G~i~~i~G~~GsGKSTLl~~l~g~~~~~-G~----~vi~~~~ee~~---~~l~~~~~~~g~--~~~~---~-~~ 340 (525)
T 1tf7_A 275 GGGFFKDSIILATGATGTGKTLLVSRFVENACAN-KE----RAILFAYEESR---AQLLRNAYSWGM--DFEE---M-ER 340 (525)
T ss_dssp TSSEESSCEEEEEECTTSSHHHHHHHHHHHHHTT-TC----CEEEEESSSCH---HHHHHHHHTTSC--CHHH---H-HH
T ss_pred CCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHhC-CC----CEEEEEEeCCH---HHHHHHHHHcCC--CHHH---H-Hh
Confidence 4589999999999999999999999999998874 43 11456778763 25555542 332 2111 1 11
Q ss_pred hCCchhhhhCCCCCccccccCCCCCCHHHHHHHHHHHhhccCCCeeeeeCCCCCcCHH-----HHHHHHHHHH--hcCCC
Q 037346 459 CSLKKDLEVLPFGDQTIIGERGINLSGGQKQRIQIARPLYQDADIFLLDDPFSPVDDH-----TGAHLFKFCW--VSSSK 531 (1156)
Q Consensus 459 ~~l~~~~~~~~~g~~t~v~~~g~~LSgGqkqRi~lAral~~~~~illlDep~s~lD~~-----~~~~i~~~~~--~~~~~ 531 (1156)
.++ .........+|||||+||+++||++..+|+++|+| ||++||.. .++.+.+.+. ...|.
T Consensus 341 ~g~-----------~~~~~~~p~~LS~g~~q~~~~a~~l~~~p~llilD-p~~~Ld~~~~~~~~~~~i~~ll~~l~~~g~ 408 (525)
T 1tf7_A 341 QNL-----------LKIVCAYPESAGLEDHLQIIKSEINDFKPARIAID-SLSALARGVSNNAFRQFVIGVTGYAKQEEI 408 (525)
T ss_dssp TTS-----------EEECCCCGGGSCHHHHHHHHHHHHHTTCCSEEEEE-CHHHHTSSSCHHHHHHHHHHHHHHHHHTTC
T ss_pred CCC-----------EEEEEeccccCCHHHHHHHHHHHHHhhCCCEEEEc-ChHHHHhhCChHHHHHHHHHHHHHHHhCCC
Confidence 222 22233445689999999999999999999999999 99999998 7777766442 25689
Q ss_pred EEEEEccCC----------Cccc-cCCEEEEEeCCe
Q 037346 532 TVIYATHQV----------EFLP-AADLILVIKDGK 556 (1156)
Q Consensus 532 tvi~vtH~~----------~~~~-~~d~i~~l~~G~ 556 (1156)
|+|+++|+. ..+. .||+|++|++|+
T Consensus 409 tvilvsh~~~~~~~~~~~~~~l~~~~D~vi~L~~ge 444 (525)
T 1tf7_A 409 TGLFTNTSDQFMGAHSITDSHISTITDTIILLQYVE 444 (525)
T ss_dssp EEEEEEECSSSSCCCSSCSSCCTTTCSEEEEEEEEE
T ss_pred EEEEEECcccccCcccccCcccceeeeEEEEEEEEE
Confidence 999999998 6665 499999999887
|
| >2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=99.66 E-value=8.3e-18 Score=184.80 Aligned_cols=131 Identities=18% Similarity=0.164 Sum_probs=101.4
Q ss_pred CccccceEEeeCCeEEEEEcCCCCChHHHHHHHhCCCCCC-CcEEEEcCe-EEEEecCCcCCCccHHHHhhcCCCCCHHH
Q 037346 374 PTLRNINLKVFHGMRVAVCGTVGSGKSSCLSCILGGVPKE-SGIIRLCGT-KAYVAQSPWIQSGKIEENILFGKEMDRER 451 (1156)
Q Consensus 374 ~~l~~i~l~i~~g~~~~ivG~~GsGKSTll~~i~g~~~~~-~G~i~~~g~-~~~v~Q~~~~~~~ti~eni~~~~~~~~~~ 451 (1156)
++|+++| +++|++++|+||||||||||+++|+|+++|+ +|+|.++|. +.|++|++.-+ +
T Consensus 15 ~vl~~i~--i~~g~~v~i~Gp~GsGKSTll~~l~g~~~~~~~G~I~~~g~~i~~~~~~~~~~---v-------------- 75 (261)
T 2eyu_A 15 DKVLELC--HRKMGLILVTGPTGSGKSTTIASMIDYINQTKSYHIITIEDPIEYVFKHKKSI---V-------------- 75 (261)
T ss_dssp THHHHGG--GCSSEEEEEECSTTCSHHHHHHHHHHHHHHHCCCEEEEEESSCCSCCCCSSSE---E--------------
T ss_pred HHHHHHh--hCCCCEEEEECCCCccHHHHHHHHHHhCCCCCCCEEEEcCCcceeecCCccee---e--------------
Confidence 5899999 9999999999999999999999999999998 999988763 45555543100 0
Q ss_pred HHHHHHHhCCchhhhhCCCCCccccccCCCCCCHHHHHHHHHHHhhccCCCeeeeeCCCCCcCHHHHHHHHHHHHhcCCC
Q 037346 452 YERVLEACSLKKDLEVLPFGDQTIIGERGINLSGGQKQRIQIARPLYQDADIFLLDDPFSPVDDHTGAHLFKFCWVSSSK 531 (1156)
Q Consensus 452 ~~~~~~~~~l~~~~~~~~~g~~t~v~~~g~~LSgGqkqRi~lAral~~~~~illlDep~s~lD~~~~~~i~~~~~~~~~~ 531 (1156)
. +..+|....+| |++|||||..+|+++++|||+ |+++...+++.+ ..|.
T Consensus 76 ----------~----------q~~~gl~~~~l------~~~la~aL~~~p~illlDEp~---D~~~~~~~l~~~--~~g~ 124 (261)
T 2eyu_A 76 ----------N----------QREVGEDTKSF------ADALRAALREDPDVIFVGEMR---DLETVETALRAA--ETGH 124 (261)
T ss_dssp ----------E----------EEEBTTTBSCH------HHHHHHHHHHCCSEEEESCCC---SHHHHHHHHHHH--HTTC
T ss_pred ----------e----------HHHhCCCHHHH------HHHHHHHHhhCCCEEEeCCCC---CHHHHHHHHHHH--ccCC
Confidence 0 00112112233 899999999999999999999 998876665543 4689
Q ss_pred EEEEEccCCCccccCCEEEEEeC
Q 037346 532 TVIYATHQVEFLPAADLILVIKD 554 (1156)
Q Consensus 532 tvi~vtH~~~~~~~~d~i~~l~~ 554 (1156)
|+++++|+.+....||++++|..
T Consensus 125 ~vl~t~H~~~~~~~~dri~~l~~ 147 (261)
T 2eyu_A 125 LVFGTLHTNTAIDTIHRIVDIFP 147 (261)
T ss_dssp EEEEEECCSSHHHHHHHHHHTSC
T ss_pred EEEEEeCcchHHHHHHHHhhhcC
Confidence 99999999886666899888753
|
| >1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A | Back alignment and structure |
|---|
Probab=99.66 E-value=4.6e-19 Score=188.77 Aligned_cols=161 Identities=15% Similarity=0.118 Sum_probs=110.8
Q ss_pred EEcCCCCceeeCCCCCCHHHHHHHHhhcccCCCceEEEcCeeCCCCChHHHhhcCeeeccccccccc-cchhccCCC---
Q 037346 956 RYAPNLPLVLRGRTGSGKSTLIQTLFRIVESTAGHILIDGKDISLIGLHDLRTRLSIIPQDPTMFEG-TTRSNLDPL--- 1031 (1156)
Q Consensus 956 ~Y~~~~~~vL~G~SGsGKSTL~~lL~rl~~p~~G~I~idG~di~~i~~~~LR~~i~~VpQdp~LF~g-TIr~Nl~~~--- 1031 (1156)
...+++.++|.||||||||||+++|.|+++ .|.+++.....-+....|+.+++++|++.+|.. |+++|+.+.
T Consensus 16 ~i~~Gei~~l~GpnGsGKSTLl~~l~gl~~----~i~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~~~~~l~~~~~~ 91 (207)
T 1znw_A 16 PAAVGRVVVLSGPSAVGKSTVVRCLRERIP----NLHFSVSATTRAPRPGEVDGVDYHFIDPTRFQQLIDQGELLEWAEI 91 (207)
T ss_dssp ---CCCEEEEECSTTSSHHHHHHHHHHHST----TCEECCCEESSCCCTTCCBTTTBEECCHHHHHHHHHTTCEEEEEEE
T ss_pred CCCCCCEEEEECCCCCCHHHHHHHHHhhCC----ceEEcccccccCCcccccCCCeeEecCHHHHHHHHhcCCceeehhh
Confidence 345777789999999999999999999986 345554222111112346789999999988854 566665321
Q ss_pred -C-----CCCHHHHHHH----------HHHcCCChHHHhhcCCccccccccccCCCEEEEecCCcCC----CHHHHHHHH
Q 037346 1032 -E-----EHADEQIWEA----------LDKCQLGDEVRKKKGKLDSQGRVLLKKSKVLVLDEATASV----DTATDNQIQ 1091 (1156)
Q Consensus 1032 -~-----~~~deei~~a----------l~~~~l~~~i~~lp~gl~s~ARALLr~~~ILiLDEaTS~L----D~~te~~I~ 1091 (1156)
. ..+.+++.+. ++.+++.+.....|..+. ||+.+|++++|||||+++ |+.+.+.++
T Consensus 92 ~~n~~~~g~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~lS----~l~~~p~~~~LDep~~~l~~~~d~~~~~~l~ 167 (207)
T 1znw_A 92 HGGLHRSGTLAQPVRAAAATGVPVLIEVDLAGARAIKKTMPEAVT----VFLAPPSWQDLQARLIGRGTETADVIQRRLD 167 (207)
T ss_dssp GGGTEEEEEEHHHHHHHHHHTCCEEEECCHHHHHHHHHHCTTSEE----EEEECSCHHHHHHHHHTTSCSCHHHHHHHHH
T ss_pred cCchhhcCCcHHHHHHHHHcCCeEEEEeCHHHHHHHHHhcCCcEE----EEEECCCHHHHHHHHHhcCCCCHHHHHHHHH
Confidence 1 1123344433 334455444444554443 899999999999999998 677888888
Q ss_pred HHHHHhc--CCceEEEeecCccccc-ccCEEEEEeC
Q 037346 1092 QTLRQHF--SDCTVVTIAHRITSVL-DSAMVLLLNH 1124 (1156)
Q Consensus 1092 ~~l~~~~--~~~TvI~IaHrl~ti~-~~D~I~Vl~~ 1124 (1156)
+.+++.. .++|+|+|+|+++.+. .||+|++|..
T Consensus 168 ~~l~~l~~~~g~tvi~vtHdl~~~~~~~d~i~~l~~ 203 (207)
T 1znw_A 168 TARIELAAQGDFDKVVVNRRLESACAELVSLLVGTA 203 (207)
T ss_dssp HHHHHHHGGGGSSEEEECSSHHHHHHHHHHHHC---
T ss_pred HHHHHHhhhccCcEEEECCCHHHHHHHHHHHHHhcc
Confidence 8887764 3789999999999876 4999999853
|
| >2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A | Back alignment and structure |
|---|
Probab=99.66 E-value=2.3e-18 Score=195.90 Aligned_cols=135 Identities=16% Similarity=0.161 Sum_probs=101.8
Q ss_pred EEEEEEEcCCCCceeeCCCCCCHHHHHHHHhhcccCCCceEEEcCeeCCCCChHHHhhcCeeeccccccccccchhccCC
Q 037346 951 RHLQVRYAPNLPLVLRGRTGSGKSTLIQTLFRIVESTAGHILIDGKDISLIGLHDLRTRLSIIPQDPTMFEGTTRSNLDP 1030 (1156)
Q Consensus 951 ~~Vsf~Y~~~~~~vL~G~SGsGKSTL~~lL~rl~~p~~G~I~idG~di~~i~~~~LR~~i~~VpQdp~LF~gTIr~Nl~~ 1030 (1156)
+++++...+++.+++.|+||||||||+++|.|+++|++|.|.++|.+ ++.+..+|+.+++++|
T Consensus 162 ~~l~~~i~~g~~v~i~G~~GsGKTTll~~l~g~~~~~~g~i~i~~~~--e~~~~~~~~~i~~~~g--------------- 224 (330)
T 2pt7_A 162 SAIKDGIAIGKNVIVCGGTGSGKTTYIKSIMEFIPKEERIISIEDTE--EIVFKHHKNYTQLFFG--------------- 224 (330)
T ss_dssp HHHHHHHHHTCCEEEEESTTSCHHHHHHHGGGGSCTTSCEEEEESSC--CCCCSSCSSEEEEECB---------------
T ss_pred hhhhhhccCCCEEEEECCCCCCHHHHHHHHhCCCcCCCcEEEECCee--ccccccchhEEEEEeC---------------
Confidence 33444445667778899999999999999999999999999999976 3444445666776652
Q ss_pred CCCCCHHHHHHHHHHcCCChHHHhhcCCc---cccccccccCCCEEEEecCCcCCCHHHHHHHHHHHHHhcCCc-eEEEe
Q 037346 1031 LEEHADEQIWEALDKCQLGDEVRKKKGKL---DSQGRVLLKKSKVLVLDEATASVDTATDNQIQQTLRQHFSDC-TVVTI 1106 (1156)
Q Consensus 1031 ~~~~~deei~~al~~~~l~~~i~~lp~gl---~s~ARALLr~~~ILiLDEaTS~LD~~te~~I~~~l~~~~~~~-TvI~I 1106 (1156)
+|. ...||||+++|++|||||||+ .+ +.+.|+....++ |+|++
T Consensus 225 --------------------------gg~~~r~~la~aL~~~p~ilildE~~~---~e----~~~~l~~~~~g~~tvi~t 271 (330)
T 2pt7_A 225 --------------------------GNITSADCLKSCLRMRPDRIILGELRS---SE----AYDFYNVLCSGHKGTLTT 271 (330)
T ss_dssp --------------------------TTBCHHHHHHHHTTSCCSEEEECCCCS---TH----HHHHHHHHHTTCCCEEEE
T ss_pred --------------------------CChhHHHHHHHHhhhCCCEEEEcCCCh---HH----HHHHHHHHhcCCCEEEEE
Confidence 121 133899999999999999998 22 455666555555 79999
Q ss_pred ecCcccccccCEEEEEeCcEEeeecChhH
Q 037346 1107 AHRITSVLDSAMVLLLNHGLIKEYDSPTK 1135 (1156)
Q Consensus 1107 aHrl~ti~~~D~I~Vl~~G~IvE~G~~~e 1135 (1156)
+|++++...||||++|++|+....+-+.+
T Consensus 272 ~H~~~~~~~~dri~~l~~g~~~~~~~~~~ 300 (330)
T 2pt7_A 272 LHAGSSEEAFIRLANMSSSNSAARNIKFE 300 (330)
T ss_dssp EECSSHHHHHHHHHHHHHTSGGGTTSCHH
T ss_pred EcccHHHHHhhhheehhcCCcccCCCCHH
Confidence 99999888999999999986433343433
|
| >3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A* | Back alignment and structure |
|---|
Probab=99.66 E-value=3.6e-17 Score=207.28 Aligned_cols=166 Identities=14% Similarity=0.054 Sum_probs=116.0
Q ss_pred ccEEEeeeEEEeCC--CCCCCccccceEEeeCCeEEEEEcCCCCChHHHHHHH--------hCCCCCCCcEEEEcCeEEE
Q 037346 356 TAIEIIDGSFSWDF--SSPNPTLRNINLKVFHGMRVAVCGTVGSGKSSCLSCI--------LGGVPKESGIIRLCGTKAY 425 (1156)
Q Consensus 356 ~~i~~~~~~f~~~~--~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKSTll~~i--------~g~~~~~~G~i~~~g~~~~ 425 (1156)
..+.+++...-+-. .++.++++|++|++++|++++|+|||||||||+++++ .|.+.|.++.. ++.
T Consensus 630 ~~i~i~~~rHP~le~~~~~~~v~ndisl~~~~g~i~~ItGpNGsGKSTlLr~ial~~~~aq~G~~vpa~~~~-----~~~ 704 (934)
T 3thx_A 630 GRIILKASRHACVEVQDEIAFIPNDVYFEKDKQMFHIITGPNMGGKSTYIRQTGVIVLMAQIGCFVPCESAE-----VSI 704 (934)
T ss_dssp CEEEEEEECCTTTTTC--CCCCCEEEEEETTTBCEEEEECCTTSSHHHHHHHHHHHHHHHHHTCCBSEEEEE-----EEC
T ss_pred cceEeecCccchhhhcCCceeecccceeecCCCeEEEEECCCCCCHHHHHHHHHHHHHHHhcCCcccccccc-----chH
Confidence 35777776433311 1245799999999999999999999999999999999 66655544321 111
Q ss_pred EecCCcCCCccHHHHhhcCCCCCHHHHHHHHHHhCCchhhhhCCCCCccccccCCCCCCHHHHHHHHHHHhh--ccCCCe
Q 037346 426 VAQSPWIQSGKIEENILFGKEMDRERYERVLEACSLKKDLEVLPFGDQTIIGERGINLSGGQKQRIQIARPL--YQDADI 503 (1156)
Q Consensus 426 v~Q~~~~~~~ti~eni~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~t~v~~~g~~LSgGqkqRi~lAral--~~~~~i 503 (1156)
+ +.| +...++.+++ ...+|+|++++..+|+++ ..+|++
T Consensus 705 ~------------d~i--------------~~~ig~~d~l--------------~~~lStf~~e~~~~a~il~~a~~~sL 744 (934)
T 3thx_A 705 V------------DCI--------------LARVGAGDSQ--------------LKGVSTFMAEMLETASILRSATKDSL 744 (934)
T ss_dssp C------------SEE--------------EEECC-----------------------CHHHHHHHHHHHHHHHCCTTCE
T ss_pred H------------HHH--------------HHhcCchhhH--------------HHhHhhhHHHHHHHHHHHHhccCCcE
Confidence 0 000 0001111111 135788888888888888 899999
Q ss_pred eeeeCCCCCcCHHHHHHHHHHHHh----cCCCEEEEEccCCCccccCCEEEEEeCCeEEEccChHHH
Q 037346 504 FLLDDPFSPVDDHTGAHLFKFCWV----SSSKTVIYATHQVEFLPAADLILVIKDGKITQAGKYSDI 566 (1156)
Q Consensus 504 lllDep~s~lD~~~~~~i~~~~~~----~~~~tvi~vtH~~~~~~~~d~i~~l~~G~i~~~g~~~~l 566 (1156)
+|||||++|+|+.....+...++. ..|.|+|++||+.+....||++..+++|++...++.+++
T Consensus 745 lLLDEp~~GlD~~~~~~i~~~il~~l~~~~g~~vl~aTH~~el~~lad~~~~v~ng~v~~~~~~~~l 811 (934)
T 3thx_A 745 IIIDELGRGTSTYDGFGLAWAISEYIATKIGAFCMFATHFHELTALANQIPTVNNLHVTALTTEETL 811 (934)
T ss_dssp EEEESCSCSSCHHHHHHHHHHHHHHHHHTTCCEEEEEESCGGGGGGGGTCTTEEEEEEEEEEETTEE
T ss_pred EEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCCEEEEEcCcHHHHHHhcccceeEeeEEEEEecCCcE
Confidence 999999999999988776443322 358999999999888888999999999999877766554
|
| >2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11 | Back alignment and structure |
|---|
Probab=99.65 E-value=3e-18 Score=178.77 Aligned_cols=147 Identities=16% Similarity=0.151 Sum_probs=105.5
Q ss_pred CeEEEEEcCCCCChHHHHHHHhCCCCCCCcEEEEcC-----------eEEEEecCCcCCCccHHHHhhcCCCCCHHHHHH
Q 037346 386 GMRVAVCGTVGSGKSSCLSCILGGVPKESGIIRLCG-----------TKAYVAQSPWIQSGKIEENILFGKEMDRERYER 454 (1156)
Q Consensus 386 g~~~~ivG~~GsGKSTll~~i~g~~~~~~G~i~~~g-----------~~~~v~Q~~~~~~~ti~eni~~~~~~~~~~~~~ 454 (1156)
|++++|+||||||||||++.|+|+++ ++| |.++| +++|++|+. .++ ++|+.--
T Consensus 1 G~~i~i~G~nG~GKTTll~~l~g~~~-~~G-i~~~g~~~~~~~~~~~~ig~~~~~~---~g~-~~~l~~~---------- 64 (189)
T 2i3b_A 1 ARHVFLTGPPGVGKTTLIHKASEVLK-SSG-VPVDGFYTEEVRQGGRRIGFDVVTL---SGT-RGPLSRV---------- 64 (189)
T ss_dssp CCCEEEESCCSSCHHHHHHHHHHHHH-HTT-CCCEEEECCEEETTSSEEEEEEEET---TSC-EEEEEEC----------
T ss_pred CCEEEEECCCCChHHHHHHHHHhhcc-cCC-EEEcCEecchhHhhhceEEEEEEec---ccc-eehhhcc----------
Confidence 78999999999999999999999999 889 87766 357888765 222 1222100
Q ss_pred HHHHhCCchhhhhCCCCCccccccCCCCCCHHHHHHH-HHHH---hhccCCCeeeeeC--CCCCcCHHHHHHHHHHHHhc
Q 037346 455 VLEACSLKKDLEVLPFGDQTIIGERGINLSGGQKQRI-QIAR---PLYQDADIFLLDD--PFSPVDDHTGAHLFKFCWVS 528 (1156)
Q Consensus 455 ~~~~~~l~~~~~~~~~g~~t~v~~~g~~LSgGqkqRi-~lAr---al~~~~~illlDe--p~s~lD~~~~~~i~~~~~~~ 528 (1156)
.. ..-+......+|+.+..+|||||+++ +|++ |+..+|+++|||| |+..+|....+.+.+.+ .
T Consensus 65 -----~~----~~~~~~~~~~v~~~~~~ls~~er~~~~~l~~~a~A~~~~~dvlilDE~g~~~~~~~~~~~~l~~~l-~- 133 (189)
T 2i3b_A 65 -----GL----EPPPGKRECRVGQYVVDLTSFEQLALPVLRNADCSSGPGQRVCVIDEIGKMELFSQLFIQAVRQTL-S- 133 (189)
T ss_dssp -----CC----CCCSSSCCEESSSSEECHHHHHTTTTTTTCCCCCCCSSCCCCEEECCCSTTTTTCSHHHHHHHHHH-H-
T ss_pred -----cc----cCCccccccccceEEEcchHHHHHHHHHHhhhhHhhccCCCEEEEeCCCccccccHHHHHHHHHHH-h-
Confidence 00 00001122367888899999999998 5566 7899999999999 89999998777665443 3
Q ss_pred CCCEEEE--Ec--cCCCccccCCEEEEEeCCeEEEc
Q 037346 529 SSKTVIY--AT--HQVEFLPAADLILVIKDGKITQA 560 (1156)
Q Consensus 529 ~~~tvi~--vt--H~~~~~~~~d~i~~l~~G~i~~~ 560 (1156)
..+|+|+ ++ |+.+ +..+|+|..+++|+|++-
T Consensus 134 ~~~~~ilgti~vsh~~~-~~~vd~i~~~~~~~i~~~ 168 (189)
T 2i3b_A 134 TPGTIILGTIPVPKGKP-LALVEEIRNRKDVKVFNV 168 (189)
T ss_dssp CSSCCEEEECCCCCSSC-CTTHHHHHTTCCSEEEEC
T ss_pred CCCcEEEEEeecCCCCc-hHHHHHHeecCCcEEEEe
Confidence 3445554 34 9876 456788888888998764
|
| >3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A* | Back alignment and structure |
|---|
Probab=99.64 E-value=6.4e-16 Score=178.52 Aligned_cols=67 Identities=18% Similarity=0.217 Sum_probs=61.3
Q ss_pred ccccc------cCCCEEEEecCCcCCCHHHHHHHHHHHHHhc-CCceEEEeecCcccccccCEEEEEeCcEEee
Q 037346 1063 GRVLL------KKSKVLVLDEATASVDTATDNQIQQTLRQHF-SDCTVVTIAHRITSVLDSAMVLLLNHGLIKE 1129 (1156)
Q Consensus 1063 ARALL------r~~~ILiLDEaTS~LD~~te~~I~~~l~~~~-~~~TvI~IaHrl~ti~~~D~I~Vl~~G~IvE 1129 (1156)
||||+ .+|++|||||||++||+++...+.+.|+++. .++|||+|+|+++.+..||+|++|++|+|++
T Consensus 291 a~al~~~~~~~~~p~~lllDEpt~~LD~~~~~~~~~~l~~l~~~g~tvi~itH~~~~~~~~d~~~~l~~G~i~~ 364 (365)
T 3qf7_A 291 SLAMSLAEVASGRLDAFFIDEGFSSLDTENKEKIASVLKELERLNKVIVFITHDREFSEAFDRKLRITGGVVVN 364 (365)
T ss_dssp HHHHHHHHHTTTTCCEEEEESCCTTSCHHHHHHHHHHHHGGGGSSSEEEEEESCHHHHTTCSCEEEEETTEEC-
T ss_pred HHHHHhhhcccCCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEecchHHHHhCCEEEEEECCEEEe
Confidence 67777 7999999999999999999999999998864 4789999999999988999999999999986
|
| >1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11 | Back alignment and structure |
|---|
Probab=99.64 E-value=8.2e-18 Score=173.99 Aligned_cols=140 Identities=13% Similarity=0.134 Sum_probs=94.3
Q ss_pred ceeeCCCCCCHHHHHHHHhhcccCCCceEEEcCeeCCCCChHHHhhcCeeeccccccccccchhccCCCCCCCHHHHHHH
Q 037346 963 LVLRGRTGSGKSTLIQTLFRIVESTAGHILIDGKDISLIGLHDLRTRLSIIPQDPTMFEGTTRSNLDPLEEHADEQIWEA 1042 (1156)
Q Consensus 963 ~vL~G~SGsGKSTL~~lL~rl~~p~~G~I~idG~di~~i~~~~LR~~i~~VpQdp~LF~gTIr~Nl~~~~~~~deei~~a 1042 (1156)
++|.||||||||||+++|+|++. |.++|.+..+......++++++++|++ +..+|+...-...+
T Consensus 3 i~l~G~nGsGKTTLl~~l~g~l~-----i~~~g~~~~~~~~~~~~~~ig~~~~~~-----~~~~~~~~~~~~~~------ 66 (178)
T 1ye8_A 3 IIITGEPGVGKTTLVKKIVERLG-----KRAIGFWTEEVRDPETKKRTGFRIITT-----EGKKKIFSSKFFTS------ 66 (178)
T ss_dssp EEEECCTTSSHHHHHHHHHHHHG-----GGEEEEEEEEEC------CCEEEEEET-----TCCEEEEEETTCCC------
T ss_pred EEEECCCCCCHHHHHHHHHHHhC-----CcCCCEEhhhhccccccceeEEEeecC-----cHHHHHHHhhcCCc------
Confidence 47889999999999999999995 667887765443225678999999997 44555410000000
Q ss_pred HHHcCCChHHHhhcCCccc-------cccc-----cccCCCEEEEec--CCcCCCHHHHHHHHHHHHHhcCCceEEEeec
Q 037346 1043 LDKCQLGDEVRKKKGKLDS-------QGRV-----LLKKSKVLVLDE--ATASVDTATDNQIQQTLRQHFSDCTVVTIAH 1108 (1156)
Q Consensus 1043 l~~~~l~~~i~~lp~gl~s-------~ARA-----LLr~~~ILiLDE--aTS~LD~~te~~I~~~l~~~~~~~TvI~IaH 1108 (1156)
.+.+...+..+.. .||| ++.+|++||||| ||+++|+.+.+.+.+.+++ .+.|+|+++|
T Consensus 67 ------~~~~~~~~~~lSgG~~qr~~la~aa~~~~l~~~p~llilDEigp~~~ld~~~~~~l~~~l~~--~~~~~i~~~H 138 (178)
T 1ye8_A 67 ------KKLVGSYGVNVQYFEELAIPILERAYREAKKDRRKVIIIDEIGKMELFSKKFRDLVRQIMHD--PNVNVVATIP 138 (178)
T ss_dssp ------SSEETTEEECHHHHHHHHHHHHHHHHHHHHHCTTCEEEECCCSTTGGGCHHHHHHHHHHHTC--TTSEEEEECC
T ss_pred ------cccccccccCcCHHHHHHHHHHhhccccccccCCCEEEEeCCCCcccCCHHHHHHHHHHHhc--CCCeEEEEEc
Confidence 0111221222221 2786 999999999999 9999999999999999976 4677999997
Q ss_pred ---Ccccccc-cCEEEEEeCcEEeee
Q 037346 1109 ---RITSVLD-SAMVLLLNHGLIKEY 1130 (1156)
Q Consensus 1109 ---rl~ti~~-~D~I~Vl~~G~IvE~ 1130 (1156)
+...+.. ||+ .+|+|+|.
T Consensus 139 ~~h~~~~~~~i~~r----~~~~i~~~ 160 (178)
T 1ye8_A 139 IRDVHPLVKEIRRL----PGAVLIEL 160 (178)
T ss_dssp SSCCSHHHHHHHTC----TTCEEEEC
T ss_pred cCCCchHHHHHHhc----CCcEEEEe
Confidence 4444433 555 56787774
|
| >1f2t_B RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_B* 1us8_B* | Back alignment and structure |
|---|
Probab=99.63 E-value=5.7e-16 Score=154.35 Aligned_cols=81 Identities=25% Similarity=0.348 Sum_probs=69.3
Q ss_pred ccCCCCCCHHHHHHHHHH------HhhccCCCeeeeeCCCCCcCHHHHHHHHHHHHh--cCCCEEEEEccCCCccccCCE
Q 037346 477 GERGINLSGGQKQRIQIA------RPLYQDADIFLLDDPFSPVDDHTGAHLFKFCWV--SSSKTVIYATHQVEFLPAADL 548 (1156)
Q Consensus 477 ~~~g~~LSgGqkqRi~lA------ral~~~~~illlDep~s~lD~~~~~~i~~~~~~--~~~~tvi~vtH~~~~~~~~d~ 548 (1156)
...+.+||||||||++|| ||++.+|+++||||||++||+...+.+.+.+.. ..|+|+|++||+.+....||+
T Consensus 52 ~~~~~~LSgGe~qrv~lA~~Lalaral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tiiivsH~~~~~~~~d~ 131 (148)
T 1f2t_B 52 ERPLTFLSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLKKIPQVILVSHDEELKDAADH 131 (148)
T ss_dssp EECGGGSCHHHHHHHHHHHHHHHHHHHHSSCSEEEEESCSCTTCHHHHHHHHHHHHHTGGGSSEEEEEESCGGGGGGCSE
T ss_pred cCChhHCCHHHHHHHHHHhhhHHHHHHcCCCCEEEEECCCccCCHHHHHHHHHHHHHHHccCCEEEEEEChHHHHHhCCE
Confidence 356789999999999876 999999999999999999999999988876644 347899999999965667999
Q ss_pred EEEE--eCCeE
Q 037346 549 ILVI--KDGKI 557 (1156)
Q Consensus 549 i~~l--~~G~i 557 (1156)
+++| ++|..
T Consensus 132 ii~l~~~~g~s 142 (148)
T 1f2t_B 132 VIRISLENGSS 142 (148)
T ss_dssp EEEEEEETTEE
T ss_pred EEEEEcCCCeE
Confidence 9999 45643
|
| >3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.62 E-value=6.6e-17 Score=178.52 Aligned_cols=143 Identities=13% Similarity=0.076 Sum_probs=87.4
Q ss_pred ceeeCCCCCCHHHHHHHHhhcccCCCceEEEcCeeCCCCChHHHhhcCeeeccccccccc-cchhccCCCCCCC----HH
Q 037346 963 LVLRGRTGSGKSTLIQTLFRIVESTAGHILIDGKDISLIGLHDLRTRLSIIPQDPTMFEG-TTRSNLDPLEEHA----DE 1037 (1156)
Q Consensus 963 ~vL~G~SGsGKSTL~~lL~rl~~p~~G~I~idG~di~~i~~~~LR~~i~~VpQdp~LF~g-TIr~Nl~~~~~~~----de 1037 (1156)
++|.||||||||||+++|+|+..|++|+|.++|.++.. ...++.+++++|++.++.. |+.||+.++.... .+
T Consensus 5 v~lvG~nGaGKSTLln~L~g~~~~~~G~i~~~g~~i~~---~~~~~~i~~v~q~~~~~~~ltv~d~~~~g~~~~~~~~~~ 81 (270)
T 3sop_A 5 IMVVGQSGLGKSTLVNTLFKSQVSRKASSWNREEKIPK---TVEIKAIGHVIEEGGVKMKLTVIDTPGFGDQINNENCWE 81 (270)
T ss_dssp EEEEESSSSSHHHHHHHHHHHHC------------CCC---CCSCCEEEESCC----CCEEEEECCCC--CCSBCTTCSH
T ss_pred EEEECCCCCCHHHHHHHHhCCCCCCCCccccCCcccCc---ceeeeeeEEEeecCCCcCCceEEechhhhhhcccHHHHH
Confidence 47889999999999999999999999999999998743 3456889999999988866 9999998764322 23
Q ss_pred HHHHHHHHcCCChHHHhhcCCcc---ccccccccCCCEEEEecCCcCCCHHHHHHHHHHHHHhcCCceEEEeecCccccc
Q 037346 1038 QIWEALDKCQLGDEVRKKKGKLD---SQGRVLLKKSKVLVLDEATASVDTATDNQIQQTLRQHFSDCTVVTIAHRITSVL 1114 (1156)
Q Consensus 1038 ei~~al~~~~l~~~i~~lp~gl~---s~ARALLr~~~ILiLDEaTS~LD~~te~~I~~~l~~~~~~~TvI~IaHrl~ti~ 1114 (1156)
.+.+.++.--.+.....+.+|-. ..|||++. +++|||||++||+.. ..+.+.|.+ ..|+|+|.|+.+++.
T Consensus 82 ~i~~~~~~~~~~~~~~~LS~G~~qrv~iaRal~~---lllldep~~gL~~lD-~~~l~~L~~---~~~vI~Vi~K~D~lt 154 (270)
T 3sop_A 82 PIEKYINEQYEKFLKEEVNIARKKRIPDTRVHCC---LYFISPTGHSLRPLD-LEFMKHLSK---VVNIIPVIAKADTMT 154 (270)
T ss_dssp HHHHHHHHHHHHHHHHHSCTTCCSSCCCCSCCEE---EEEECCCSSSCCHHH-HHHHHHHHT---TSEEEEEETTGGGSC
T ss_pred HHHHHHHHHHHhhhHHhcCcccchhhhhheeeee---eEEEecCCCcCCHHH-HHHHHHHHh---cCcEEEEEeccccCC
Confidence 44444442111112223333332 23888875 999999999999976 344444443 389999999987764
Q ss_pred c
Q 037346 1115 D 1115 (1156)
Q Consensus 1115 ~ 1115 (1156)
.
T Consensus 155 ~ 155 (270)
T 3sop_A 155 L 155 (270)
T ss_dssp H
T ss_pred H
Confidence 3
|
| >2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A* | Back alignment and structure |
|---|
Probab=99.62 E-value=4.4e-17 Score=178.20 Aligned_cols=163 Identities=15% Similarity=0.121 Sum_probs=101.4
Q ss_pred CCCCccccceEEeeCCeEEEEEcCCCCChHHHHHHHhCCCCCCCcEEEE---cCeEEEEecCCcCCCccHHHHhhcCCC-
Q 037346 371 SPNPTLRNINLKVFHGMRVAVCGTVGSGKSSCLSCILGGVPKESGIIRL---CGTKAYVAQSPWIQSGKIEENILFGKE- 446 (1156)
Q Consensus 371 ~~~~~l~~i~l~i~~g~~~~ivG~~GsGKSTll~~i~g~~~~~~G~i~~---~g~~~~v~Q~~~~~~~ti~eni~~~~~- 446 (1156)
++.++|+|+||++++|++++|+||||||||||+++|.|.+ |.+.+ ...++|++|++.....|+.+|+.+...
T Consensus 10 ~~~~~l~~isl~i~~g~iigI~G~~GsGKSTl~k~L~~~l----G~~~~~~~~~~i~~v~~d~~~~~l~~~~~~~~~~~~ 85 (245)
T 2jeo_A 10 GVDLGTENLYFQSMRPFLIGVSGGTASGKSTVCEKIMELL----GQNEVEQRQRKVVILSQDRFYKVLTAEQKAKALKGQ 85 (245)
T ss_dssp -------------CCSEEEEEECSTTSSHHHHHHHHHHHH----TGGGSCGGGCSEEEEEGGGGBCCCCHHHHHHHHTTC
T ss_pred CCceeecceeccCCCCEEEEEECCCCCCHHHHHHHHHHHh----chhcccccCCceEEEeCCcCccccCHhHhhhhhccC
Confidence 3567999999999999999999999999999999999875 43322 235889999975445689998764211
Q ss_pred --------CCHHHHHHHHHHhCCchhhhhCCCCCccccccCCCCCCHHHHHHHHHHHhhccCCCeeeeeCCCCCcCHHHH
Q 037346 447 --------MDRERYERVLEACSLKKDLEVLPFGDQTIIGERGINLSGGQKQRIQIARPLYQDADIFLLDDPFSPVDDHTG 518 (1156)
Q Consensus 447 --------~~~~~~~~~~~~~~l~~~~~~~~~g~~t~v~~~g~~LSgGqkqRi~lAral~~~~~illlDep~s~lD~~~~ 518 (1156)
++.+.+.+.++.. . .+.. .....||+||+||+++ +++..+|+++|||||....|...
T Consensus 86 ~~~~~~~~~~~~~~~~~L~~l--~-------~~~~----~~~~~ls~g~~~r~~~-~~~~~~~~~lilDg~~~~~~~~l- 150 (245)
T 2jeo_A 86 YNFDHPDAFDNDLMHRTLKNI--V-------EGKT----VEVPTYDFVTHSRLPE-TTVVYPADVVLFEGILVFYSQEI- 150 (245)
T ss_dssp CCTTSGGGBCHHHHHHHHHHH--H-------TTCC----EEECCEETTTTEECSS-CEEECCCSEEEEECTTTTTSHHH-
T ss_pred CCCCCcccccHHHHHHHHHHH--H-------CCCC----eecccccccccCccCc-eEEecCCCEEEEeCccccccHHH-
Confidence 2233344444332 1 1111 2335799999999988 78899999999999988887642
Q ss_pred HHHHHHHHhcCCCEEEEEccCCCcc-cc-CCEEEEEeCCeEEEccChHHHH
Q 037346 519 AHLFKFCWVSSSKTVIYATHQVEFL-PA-ADLILVIKDGKITQAGKYSDIL 567 (1156)
Q Consensus 519 ~~i~~~~~~~~~~tvi~vtH~~~~~-~~-~d~i~~l~~G~i~~~g~~~~l~ 567 (1156)
. ...+.|++++||+...+ +. ++.+ ++|+ +.+++.
T Consensus 151 ---~----~~~~~~i~v~th~~~~~~r~~~r~~---~~G~-----~~e~~~ 186 (245)
T 2jeo_A 151 ---R----DMFHLRLFVDTDSDVRLSRRVLRDV---RRGR-----DLEQIL 186 (245)
T ss_dssp ---H----TTCSEEEEEECCHHHHHHHHHHHHT---C--------CHHHHH
T ss_pred ---H----HhcCeEEEEECCHHHHHHHHHHHHH---HcCC-----CHHHHH
Confidence 1 22478999999973333 33 3333 5564 455554
|
| >1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A* | Back alignment and structure |
|---|
Probab=99.62 E-value=1e-16 Score=180.63 Aligned_cols=166 Identities=11% Similarity=0.078 Sum_probs=103.8
Q ss_pred CCccccceEEeeCCeEEEEEcCCCCChHHHHHHHhCCCCCCCc-EEEEcCeEEEEecCCcCCCccHHH------------
Q 037346 373 NPTLRNINLKVFHGMRVAVCGTVGSGKSSCLSCILGGVPKESG-IIRLCGTKAYVAQSPWIQSGKIEE------------ 439 (1156)
Q Consensus 373 ~~~l~~i~l~i~~g~~~~ivG~~GsGKSTll~~i~g~~~~~~G-~i~~~g~~~~v~Q~~~~~~~ti~e------------ 439 (1156)
.++|+++++.+++|++++|+||||||||||++.|+|.+.|.+| .|. |+..+.. ...++.
T Consensus 22 ~~~Ld~i~~~l~~G~~~~i~G~~G~GKTTl~~~ia~~~~~~~G~~v~------~~~~e~~--~~~~~~r~~~~~~~~~~~ 93 (296)
T 1cr0_A 22 CTGINDKTLGARGGEVIMVTSGSGMGKSTFVRQQALQWGTAMGKKVG------LAMLEES--VEETAEDLIGLHNRVRLR 93 (296)
T ss_dssp CTTHHHHHCSBCTTCEEEEEESTTSSHHHHHHHHHHHHHHTSCCCEE------EEESSSC--HHHHHHHHHHHHTTCCGG
T ss_pred HHHHHHHhcCCCCCeEEEEEeCCCCCHHHHHHHHHHHHHHHcCCeEE------EEeCcCC--HHHHHHHHHHHHcCCChh
Confidence 3589999999999999999999999999999999999998877 443 2222210 001111
Q ss_pred ---HhhcCCCCCHHHHHHHHHHhCCchhhhhCCCCCccccccCCCCCCHHH-HHHHHHHHhhccCCCeeeeeCCCC---C
Q 037346 440 ---NILFGKEMDRERYERVLEACSLKKDLEVLPFGDQTIIGERGINLSGGQ-KQRIQIARPLYQDADIFLLDDPFS---P 512 (1156)
Q Consensus 440 ---ni~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~t~v~~~g~~LSgGq-kqRi~lAral~~~~~illlDep~s---~ 512 (1156)
++..+. .+++.+.+..+.+ ++..+ -.+.+...++|.+| +||+. |+++..+|+++++|||++ +
T Consensus 94 ~~~~l~~~~-~~~~~~~~~~~~~-----l~~~~----l~i~~~~~~~~~~~l~~~~~-a~~~~~~p~llilDept~~~~~ 162 (296)
T 1cr0_A 94 QSDSLKREI-IENGKFDQWFDEL-----FGNDT----FHLYDSFAEAETDRLLAKLA-YMRSGLGCDVIILDHISIVVSA 162 (296)
T ss_dssp GCHHHHHHH-HHHTHHHHHHHHH-----HSSSC----EEEECCCCSCCHHHHHHHHH-HHHHTTCCSEEEEEEEC-----
T ss_pred hccccccCC-CCHHHHHHHHHHH-----hccCC----EEEECCCCCCCHHHHHHHHH-HHHHhcCCCEEEEcCccccCCC
Confidence 121110 0111122222211 11111 01222334689999 77777 999999999999999999 4
Q ss_pred ---cCH-HHHHHHHHHHHh---cCCCEEEEEccCC--C--------------------ccc-cCCEEEEEeCCeE
Q 037346 513 ---VDD-HTGAHLFKFCWV---SSSKTVIYATHQV--E--------------------FLP-AADLILVIKDGKI 557 (1156)
Q Consensus 513 ---lD~-~~~~~i~~~~~~---~~~~tvi~vtH~~--~--------------------~~~-~~d~i~~l~~G~i 557 (1156)
+|. .....+.+.+.. ..|.|||++||+. + .+. .||+|++|++|+.
T Consensus 163 ~~~~d~~~~~~~i~~~L~~la~~~~~~vi~vsh~~r~~~~~~~~~~~~p~l~dl~~s~~i~~~aD~vi~L~~~~~ 237 (296)
T 1cr0_A 163 SGESDERKMIDNLMTKLKGFAKSTGVVLVVICHLKNPDKGKAHEEGRPVSITDLRGSGALRQLSDTIIALERNQQ 237 (296)
T ss_dssp ------CHHHHHHHHHHHHHHHHHCCEEEEEEECC-----------------CCC---CHHHHCSEEEEEEEC--
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHhCCeEEEEEecCccccccccccCCCCCHHHhcccHHhHhhCcEEEEEecCcc
Confidence 444 444555554422 3489999999995 4 454 5999999998875
|
| >4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A* | Back alignment and structure |
|---|
Probab=99.61 E-value=3.3e-17 Score=168.81 Aligned_cols=141 Identities=16% Similarity=0.152 Sum_probs=95.1
Q ss_pred EEEEEEcCCCCceeeCCCCCCHHHHHHHHhhcccCCCceEEEcCeeCCCCChHHHhhcCeeeccccc--cccccchhccC
Q 037346 952 HLQVRYAPNLPLVLRGRTGSGKSTLIQTLFRIVESTAGHILIDGKDISLIGLHDLRTRLSIIPQDPT--MFEGTTRSNLD 1029 (1156)
Q Consensus 952 ~Vsf~Y~~~~~~vL~G~SGsGKSTL~~lL~rl~~p~~G~I~idG~di~~i~~~~LR~~i~~VpQdp~--LF~gTIr~Nl~ 1029 (1156)
||||+.++++-++|.|+||||||||++++++ |... ++.+.+| ++++|++. .+.++..+++.
T Consensus 1 ~vsl~i~~gei~~l~G~nGsGKSTl~~~~~~------~~~~--------~~~d~~~---g~~~~~~~~~~~~~~~~~~~~ 63 (171)
T 4gp7_A 1 SMKLTIPELSLVVLIGSSGSGKSTFAKKHFK------PTEV--------ISSDFCR---GLMSDDENDQTVTGAAFDVLH 63 (171)
T ss_dssp CEEEEEESSEEEEEECCTTSCHHHHHHHHSC------GGGE--------EEHHHHH---HHHCSSTTCGGGHHHHHHHHH
T ss_pred CccccCCCCEEEEEECCCCCCHHHHHHHHcc------CCeE--------EccHHHH---HHhcCcccchhhHHHHHHHHH
Confidence 5889998998889999999999999999653 2222 2334455 67788862 33443333321
Q ss_pred CCCCCCHHHHHHHHHHcCCChHHHhhcCCccc--------cccccccCCCEEEEecCCcCCCHHHH--------------
Q 037346 1030 PLEEHADEQIWEALDKCQLGDEVRKKKGKLDS--------QGRVLLKKSKVLVLDEATASVDTATD-------------- 1087 (1156)
Q Consensus 1030 ~~~~~~deei~~al~~~~l~~~i~~lp~gl~s--------~ARALLr~~~ILiLDEaTS~LD~~te-------------- 1087 (1156)
...+.....+....+... ...+ .|||+..+|++|+|||||++||+.++
T Consensus 64 --------~~~~~~~~~g~~~~~~~~--~~~s~g~~qrv~iAral~~~p~~lllDEPt~~Ld~~~~~R~~~~~~~~vi~~ 133 (171)
T 4gp7_A 64 --------YIVSKRLQLGKLTVVDAT--NVQESARKPLIEMAKDYHCFPVAVVFNLPEKVCQERNKNRTDRQVEEYVIRK 133 (171)
T ss_dssp --------HHHHHHHHTTCCEEEESC--CCSHHHHHHHHHHHHHTTCEEEEEEECCCHHHHHHHHHTCSSCCCCHHHHHH
T ss_pred --------HHHHHHHhCCCeEEEECC--CCCHHHHHHHHHHHHHcCCcEEEEEEeCCHHHHHHHHhcccCCCCCHHHHHH
Confidence 112222233332222211 1112 28999999999999999999999955
Q ss_pred --HHHHHHHHHhc-CCceEEEeecCcccccccCEE
Q 037346 1088 --NQIQQTLRQHF-SDCTVVTIAHRITSVLDSAMV 1119 (1156)
Q Consensus 1088 --~~I~~~l~~~~-~~~TvI~IaHrl~ti~~~D~I 1119 (1156)
+.+.+.|++.. +|.|+|+|+|+++.+..++++
T Consensus 134 ~~~~l~~~l~~l~~~g~tvi~vtH~~~~~~~~~~~ 168 (171)
T 4gp7_A 134 HTQQMKKSIKGLQREGFRYVYILNSPEEVEEVVFE 168 (171)
T ss_dssp HHHHHHHHSTTHHHHTCSEEEEECSHHHHHHEEEE
T ss_pred HHHHhhhhhhhHHhcCCcEEEEeCCHHHhhhhhhc
Confidence 77777765542 388999999999999887765
|
| >3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=99.61 E-value=7.9e-18 Score=188.76 Aligned_cols=163 Identities=15% Similarity=0.149 Sum_probs=114.2
Q ss_pred cCCCCceeeCCCCCCHHHHHHHHhhcccCCCceEEEcCeeCCCCC----hHHH--hhcCeeeccccc-ccc-ccchhccC
Q 037346 958 APNLPLVLRGRTGSGKSTLIQTLFRIVESTAGHILIDGKDISLIG----LHDL--RTRLSIIPQDPT-MFE-GTTRSNLD 1029 (1156)
Q Consensus 958 ~~~~~~vL~G~SGsGKSTL~~lL~rl~~p~~G~I~idG~di~~i~----~~~L--R~~i~~VpQdp~-LF~-gTIr~Nl~ 1029 (1156)
.+++.++|.|+|||||||+++.|+|++.|++|+|.++|.|+.... +..+ |..+++|+|++. ++. .|+++|+.
T Consensus 98 ~~g~vi~lvG~nGsGKTTll~~Lag~l~~~~g~V~l~g~d~~r~~a~~ql~~~~~~~~i~~v~q~~~~~~~~~~v~e~l~ 177 (302)
T 3b9q_A 98 RKPAVIMIVGVNGGGKTTSLGKLAHRLKNEGTKVLMAAGDTFRAAASDQLEIWAERTGCEIVVAEGDKAKAATVLSKAVK 177 (302)
T ss_dssp SSCEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEECCCCSCHHHHHHHHHHHHHHTCEEECCC--CCCHHHHHHHHHH
T ss_pred CCCcEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEEeecccchhHHHHHHHHHHhcCceEEEecCCccCHHHHHHHHHH
Confidence 445556899999999999999999999999999999999987754 2334 457999999987 654 58999985
Q ss_pred CCC-CCCHHHHHHHHHHcCCChHHHhhcCCcc----ccccccccCCC--EEEEecCCcCCCHHHHHHHHHHHHHhcCCce
Q 037346 1030 PLE-EHADEQIWEALDKCQLGDEVRKKKGKLD----SQGRVLLKKSK--VLVLDEATASVDTATDNQIQQTLRQHFSDCT 1102 (1156)
Q Consensus 1030 ~~~-~~~deei~~al~~~~l~~~i~~lp~gl~----s~ARALLr~~~--ILiLDEaTS~LD~~te~~I~~~l~~~~~~~T 1102 (1156)
... ...|. ..++.+|+.+....++..|. ..|||+..+|+ +|+|| ||+++|+.+.. +.+.+ ..+.|
T Consensus 178 ~~~~~~~d~---~lldt~gl~~~~~~~~~eLSkqr~~iaral~~~P~e~lLvLD-ptsglD~~~~~---~~~~~-~~g~t 249 (302)
T 3b9q_A 178 RGKEEGYDV---VLCDTSGRLHTNYSLMEELIACKKAVGKIVSGAPNEILLVLD-GNTGLNMLPQA---REFNE-VVGIT 249 (302)
T ss_dssp HHHHTTCSE---EEECCCCCSSCCHHHHHHHHHHHHHHHTTSTTCCSEEEEEEE-GGGGGGGHHHH---HHHHH-HTCCC
T ss_pred HHHHcCCcc---hHHhcCCCCcchhHHHHHHHHHHHHHHHhhccCCCeeEEEEe-CCCCcCHHHHH---HHHHH-hcCCC
Confidence 321 00111 23445555443333333332 23899999999 99999 99999998653 22322 13789
Q ss_pred EEEeec---------Cccccc-ccCEEEEEeCcEEe
Q 037346 1103 VVTIAH---------RITSVL-DSAMVLLLNHGLIK 1128 (1156)
Q Consensus 1103 vI~IaH---------rl~ti~-~~D~I~Vl~~G~Iv 1128 (1156)
+|++|| .++.+. ..+.|.++..|+.+
T Consensus 250 ~iiiThlD~~~~~g~~l~~~~~~~~pi~~i~~Ge~~ 285 (302)
T 3b9q_A 250 GLILTKLDGSARGGCVVSVVEELGIPVKFIGVGEAV 285 (302)
T ss_dssp EEEEECCSSCSCTHHHHHHHHHHCCCEEEEECSSSG
T ss_pred EEEEeCCCCCCccChheehHHHHCCCEEEEeCCCCh
Confidence 999999 223332 35789999999754
|
| >1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A* | Back alignment and structure |
|---|
Probab=99.61 E-value=3.5e-18 Score=198.32 Aligned_cols=161 Identities=14% Similarity=0.076 Sum_probs=120.5
Q ss_pred EEEEEEEEEcCCC--------------------CceeeCCCCCCHHHHHHHHhhcccCCCceEEEcCeeCCCCChHHHhh
Q 037346 949 NIRHLQVRYAPNL--------------------PLVLRGRTGSGKSTLIQTLFRIVESTAGHILIDGKDISLIGLHDLRT 1008 (1156)
Q Consensus 949 ~~~~Vsf~Y~~~~--------------------~~vL~G~SGsGKSTL~~lL~rl~~p~~G~I~idG~di~~i~~~~LR~ 1008 (1156)
.++||++..++++ .++|.||||||||||+++|+|+++|++|+|.++|.++. |
T Consensus 38 ~l~~is~~i~~Ge~~~~~~~i~~~L~~~~~~~~~valvG~nGaGKSTLln~L~Gl~~p~~GsI~~~g~~~t-------~- 109 (413)
T 1tq4_A 38 ILNLIELRMRAGNIQLTNSAISDALKEIDSSVLNVAVTGETGSGKSSFINTLRGIGNEEEGAAKTGVVEVT-------M- 109 (413)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHHHCCEEEEEEECTTSSHHHHHHHHHTCCTTSTTSCCCCC-----------C-
T ss_pred HhhhccceecCCCCcccchhhhhhhhhcccCCeEEEEECCCCCcHHHHHHHHhCCCCccCceEEECCeecc-------e-
Confidence 5677888877777 67899999999999999999999999999999998764 2
Q ss_pred cCeeeccccccccccchhccCCCCCCCHHHHHHHHHHcCCChHHHh--hcCCc--c---cccccccc----------CCC
Q 037346 1009 RLSIIPQDPTMFEGTTRSNLDPLEEHADEQIWEALDKCQLGDEVRK--KKGKL--D---SQGRVLLK----------KSK 1071 (1156)
Q Consensus 1009 ~i~~VpQdp~LF~gTIr~Nl~~~~~~~deei~~al~~~~l~~~i~~--lp~gl--~---s~ARALLr----------~~~ 1071 (1156)
.++++|++....-|++||+.++.. ++.+.++++.+++.+.-.. +..|. . ..||||.+ +|+
T Consensus 110 -~~~v~q~~~~~~ltv~D~~g~~~~--~~~~~~~L~~~~L~~~~~~~~lS~G~~~kqrv~la~aL~~~~~p~~lV~tkpd 186 (413)
T 1tq4_A 110 -ERHPYKHPNIPNVVFWDLPGIGST--NFPPDTYLEKMKFYEYDFFIIISATRFKKNDIDIAKAISMMKKEFYFVRTKVD 186 (413)
T ss_dssp -CCEEEECSSCTTEEEEECCCGGGS--SCCHHHHHHHTTGGGCSEEEEEESSCCCHHHHHHHHHHHHTTCEEEEEECCHH
T ss_pred -eEEeccccccCCeeehHhhcccch--HHHHHHHHHHcCCCccCCeEEeCCCCccHHHHHHHHHHHhcCCCeEEEEecCc
Confidence 288999986556799999876432 3457788888887653111 22221 0 11899999 999
Q ss_pred EEEEecCCcCCCHHHHHHHHHHHHHhc---------C-CceEEEeecCccc--ccc-cCEEE
Q 037346 1072 VLVLDEATASVDTATDNQIQQTLRQHF---------S-DCTVVTIAHRITS--VLD-SAMVL 1120 (1156)
Q Consensus 1072 ILiLDEaTS~LD~~te~~I~~~l~~~~---------~-~~TvI~IaHrl~t--i~~-~D~I~ 1120 (1156)
+|+|||||++||+.+.+.+.+.|++.. . ..++++-||.++. +.. ||+|.
T Consensus 187 lllLDEPtsgLD~~~~~~l~~~l~~l~~~~l~~~g~~~~~iiliSsh~l~~~~~e~L~d~I~ 248 (413)
T 1tq4_A 187 SDITNEADGEPQTFDKEKVLQDIRLNCVNTFRENGIAEPPIFLLSNKNVCHYDFPVLMDKLI 248 (413)
T ss_dssp HHHHHHHTTCCTTCCHHHHHHHHHHHHHHHHHHTTCSSCCEEECCTTCTTSTTHHHHHHHHH
T ss_pred ccccCcccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCCcEEEEecCcCCccCHHHHHHHHH
Confidence 999999999999999999988887762 1 2567788998775 443 66663
|
| >1ewq_A DNA mismatch repair protein MUTS; multiple domains of protein, mostly mixed alpha-beta structures, one domain is entirely helical; HET: DNA; 2.20A {Thermus aquaticus} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1nne_A* 1fw6_A* 1ewr_A* | Back alignment and structure |
|---|
Probab=99.61 E-value=1.6e-16 Score=198.17 Aligned_cols=144 Identities=15% Similarity=0.093 Sum_probs=105.2
Q ss_pred ccEEEeeeEEEeCCC--CCCCccccceEEeeCCeEEEEEcCCCCChHHHHHHHhCCCC-CCCcEEEEc--CeEEEEecCC
Q 037346 356 TAIEIIDGSFSWDFS--SPNPTLRNINLKVFHGMRVAVCGTVGSGKSSCLSCILGGVP-KESGIIRLC--GTKAYVAQSP 430 (1156)
Q Consensus 356 ~~i~~~~~~f~~~~~--~~~~~l~~i~l~i~~g~~~~ivG~~GsGKSTll~~i~g~~~-~~~G~i~~~--g~~~~v~Q~~ 430 (1156)
+.++++++ .+|-- ++.++++|+||+ |++++|+||||||||||+++|+|... +..|.+.-. ..+++++|
T Consensus 549 ~~i~i~~~--rHP~le~~~~~vl~disl~---g~i~~I~GpNGsGKSTlLr~iagl~~~~~~G~~vpa~~~~i~~v~~-- 621 (765)
T 1ewq_A 549 DRLQIRAG--RHPVVERRTEFVPNDLEMA---HELVLITGPNMAGKSTFLRQTALIALLAQVGSFVPAEEAHLPLFDG-- 621 (765)
T ss_dssp SSEEEEEE--CCTTGGGTSCCCCEEEEES---SCEEEEESCSSSSHHHHHHHHHHHHHHHTTTCCBSSSEEEECCCSE--
T ss_pred CcEEEEEe--ECceEccCCceEeeeccCC---CcEEEEECCCCCChHHHHHHHHhhhhhcccCceeehhccceeeHHH--
Confidence 45888877 33321 246899999999 99999999999999999999999864 566754211 12445544
Q ss_pred cCCC-ccHHHHhhcCCCCCHHHHHHHHHHhCCchhhhhCCCCCccccccCCCCCCHHHHHHHHHHHhh--ccCCCeeeee
Q 037346 431 WIQS-GKIEENILFGKEMDRERYERVLEACSLKKDLEVLPFGDQTIIGERGINLSGGQKQRIQIARPL--YQDADIFLLD 507 (1156)
Q Consensus 431 ~~~~-~ti~eni~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~t~v~~~g~~LSgGqkqRi~lAral--~~~~~illlD 507 (1156)
++. .++.||+.+ .+|+|+++++.+|+++ +.+|+++|||
T Consensus 622 -i~~~~~~~d~l~~--------------------------------------g~S~~~~e~~~la~il~~a~~p~LlLLD 662 (765)
T 1ewq_A 622 -IYTRIGASDDLAG--------------------------------------GKSTFMVEMEEVALILKEATENSLVLLD 662 (765)
T ss_dssp -EEEECCC--------------------------------------------CCSHHHHHHHHHHHHHHHCCTTEEEEEE
T ss_pred -hhccCCHHHHHHh--------------------------------------cccHHHHHHHHHHHHHHhccCCCEEEEE
Confidence 222 244444422 3689999999999999 9999999999
Q ss_pred CC---CCCcCHHHH-HHHHHHHHhcCCCEEEEEccCCCccccC
Q 037346 508 DP---FSPVDDHTG-AHLFKFCWVSSSKTVIYATHQVEFLPAA 546 (1156)
Q Consensus 508 ep---~s~lD~~~~-~~i~~~~~~~~~~tvi~vtH~~~~~~~~ 546 (1156)
|| |+++|.... ..+.+.+.. .|.|+|++||+.+....+
T Consensus 663 EpgrGTs~lD~~~~~~~i~~~L~~-~g~~vl~~TH~~~l~~~~ 704 (765)
T 1ewq_A 663 EVGRGTSSLDGVAIATAVAEALHE-RRAYTLFATHYFELTALG 704 (765)
T ss_dssp STTTTSCHHHHHHHHHHHHHHHHH-HTCEEEEECCCHHHHTCC
T ss_pred CCCCCCCCcCHHHHHHHHHHHHHh-CCCEEEEEeCCHHHHHhh
Confidence 99 999999875 356665544 688999999998776544
|
| >3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A* | Back alignment and structure |
|---|
Probab=99.59 E-value=1e-17 Score=178.92 Aligned_cols=138 Identities=12% Similarity=0.127 Sum_probs=107.6
Q ss_pred eeCCeEEEEEcCCCCChHHHHHHHhCCCCCCCcEEEEcCeEEEEecCCcCCC---ccHHHHhhcC--C--CCCHHHHHHH
Q 037346 383 VFHGMRVAVCGTVGSGKSSCLSCILGGVPKESGIIRLCGTKAYVAQSPWIQS---GKIEENILFG--K--EMDRERYERV 455 (1156)
Q Consensus 383 i~~g~~~~ivG~~GsGKSTll~~i~g~~~~~~G~i~~~g~~~~v~Q~~~~~~---~ti~eni~~~--~--~~~~~~~~~~ 455 (1156)
.++|++++|+||||||||||+++|.|.++| .++|++|++.++. .|+++|+.+. . ..+.+++.+.
T Consensus 3 ~~~~~~i~i~G~~GsGKSTl~~~l~~~~~~---------~i~~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 73 (211)
T 3asz_A 3 APKPFVIGIAGGTASGKTTLAQALARTLGE---------RVALLPMDHYYKDLGHLPLEERLRVNYDHPDAFDLALYLEH 73 (211)
T ss_dssp --CCEEEEEEESTTSSHHHHHHHHHHHHGG---------GEEEEEGGGCBCCCTTSCHHHHHHSCTTSGGGBCHHHHHHH
T ss_pred CCCcEEEEEECCCCCCHHHHHHHHHHHhCC---------CeEEEecCccccCcccccHHHhcCCCCCChhhhhHHHHHHH
Confidence 578999999999999999999999998875 6899999998763 3777776543 2 2456777777
Q ss_pred HHHhCCchhhhhCCCCCccccccCCCCCCHHH----HHHHHHHHhhccCCCeeeeeCCCCC-------cCHHHHHHHHHH
Q 037346 456 LEACSLKKDLEVLPFGDQTIIGERGINLSGGQ----KQRIQIARPLYQDADIFLLDDPFSP-------VDDHTGAHLFKF 524 (1156)
Q Consensus 456 ~~~~~l~~~~~~~~~g~~t~v~~~g~~LSgGq----kqRi~lAral~~~~~illlDep~s~-------lD~~~~~~i~~~ 524 (1156)
++..++.+.+.. .+..+|+|| +||+++||+++.+|+++++|||+++ ||+..+..+.+.
T Consensus 74 l~~~~~~~~~~~-----------~~~~~s~g~~~~~~~~~~~~~~li~~~~ll~~de~~~~~~d~~i~ld~~~~~~~~r~ 142 (211)
T 3asz_A 74 AQALLRGLPVEM-----------PVYDFRAYTRSPRRTPVRPAPVVILEGILVLYPKELRDLMDLKVFVDADADERFIRR 142 (211)
T ss_dssp HHHHHTTCCEEE-----------CCEETTTTEECSSCEEECCCSEEEEESTTTTSSHHHHTTCSEEEEEECCHHHHHHHH
T ss_pred HHHHHcCCCcCC-----------CcccCcccCCCCCeEEeCCCcEEEEeehhhccCHHHHHhcCEEEEEeCCHHHHHHHH
Confidence 777766544332 345677775 5799999999999999999999999 999888777665
Q ss_pred HHh---cCCCEEEEEccCC
Q 037346 525 CWV---SSSKTVIYATHQV 540 (1156)
Q Consensus 525 ~~~---~~~~tvi~vtH~~ 540 (1156)
+.+ .+|+|++.++|+.
T Consensus 143 l~r~~~~~g~t~~~~~~~~ 161 (211)
T 3asz_A 143 LKRDVLERGRSLEGVVAQY 161 (211)
T ss_dssp HHHHHHHSCCCHHHHHHHH
T ss_pred HHHHHHHhCCCHHHHHHHH
Confidence 533 3589999999974
|
| >4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A* | Back alignment and structure |
|---|
Probab=99.59 E-value=3.1e-16 Score=169.58 Aligned_cols=150 Identities=17% Similarity=0.163 Sum_probs=87.9
Q ss_pred EeeCCeEEEEEcCCCCChHHHHHHHhCCCCCCCcEEEEcCeEEEEecCCcCCCccHHHHhhcCCCCCHHHHHHHHHHhCC
Q 037346 382 KVFHGMRVAVCGTVGSGKSSCLSCILGGVPKESGIIRLCGTKAYVAQSPWIQSGKIEENILFGKEMDRERYERVLEACSL 461 (1156)
Q Consensus 382 ~i~~g~~~~ivG~~GsGKSTll~~i~g~~~~~~G~i~~~g~~~~v~Q~~~~~~~ti~eni~~~~~~~~~~~~~~~~~~~l 461 (1156)
-+++|++++|+||||||||||++.|+|.+.+..|....++...|+..+.. ...++...+.+..++
T Consensus 21 gi~~G~~~~l~G~nGsGKSTll~~l~g~~~~~~~~g~~~~~~i~~~~~~~---------------~~~~~i~~~~~~~~~ 85 (231)
T 4a74_A 21 GIETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENT---------------FRPERIREIAQNRGL 85 (231)
T ss_dssp SEESSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSC---------------CCHHHHHHHHHHTTS
T ss_pred CCCCCcEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCEEEEEECCCC---------------CCHHHHHHHHHHcCC
Confidence 68999999999999999999999999966653333222333444433321 111222223333332
Q ss_pred chh--hhhCCCCCccccccCCCCCCHH-HHHHHHHHHhhcc-------CCCeeeeeCCCCCcCHH-------HH-----H
Q 037346 462 KKD--LEVLPFGDQTIIGERGINLSGG-QKQRIQIARPLYQ-------DADIFLLDDPFSPVDDH-------TG-----A 519 (1156)
Q Consensus 462 ~~~--~~~~~~g~~t~v~~~g~~LSgG-qkqRi~lAral~~-------~~~illlDep~s~lD~~-------~~-----~ 519 (1156)
... .+.+. + ....+++ |++++..+++++. +|+++++|||++.+|+. .+ .
T Consensus 86 ~~~~~~~~~~------~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~llilDe~~~~l~~~~~~~~~~~~r~~~~~ 156 (231)
T 4a74_A 86 DPDEVLKHIY------V---ARAFNSNHQMLLVQQAEDKIKELLNTDRPVKLLIVDSLTSHFRSEYIGRGALAERQQKLA 156 (231)
T ss_dssp CHHHHHHTEE------E---EECCSHHHHHHHHHHHHHHHHHHTTSSSCEEEEEEETSSHHHHHHSCSTTHHHHHHHHHH
T ss_pred CHHHHhhcEE------E---EecCChHHHHHHHHHHHHHHHHhcccCCceeEEEECChHHHhccccCCCcchhHHHHHHH
Confidence 211 00000 0 0112333 3444555555554 99999999999999984 11 1
Q ss_pred HHHHHHHh---cCCCEEEEEccCCC----ccc-cCCEEEEEeCC
Q 037346 520 HLFKFCWV---SSSKTVIYATHQVE----FLP-AADLILVIKDG 555 (1156)
Q Consensus 520 ~i~~~~~~---~~~~tvi~vtH~~~----~~~-~~d~i~~l~~G 555 (1156)
.+++.+.. ..|.|+|++||..+ .+. .||++++|++|
T Consensus 157 ~~~~~l~~~~~~~g~tvi~vtH~~~~~g~~~~~~~d~~l~l~~~ 200 (231)
T 4a74_A 157 KHLADLHRLANLYDIAVFVTNQVQANGGHILAHSATLRVYLRKG 200 (231)
T ss_dssp HHHHHHHHHHHHHTCEEEEEEECC---------CCSEEEEEEEC
T ss_pred HHHHHHHHHHHHCCCeEEEEeecccCcchhhHhhceEEEEEEec
Confidence 34443322 35899999999544 465 49999999875
|
| >2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11 | Back alignment and structure |
|---|
Probab=99.57 E-value=8.2e-17 Score=167.86 Aligned_cols=163 Identities=17% Similarity=0.194 Sum_probs=114.0
Q ss_pred CCceeeCCCCCCHHHHHHHHhhcccCCCceEEEcCeeCCCCChHHHhhcCeeeccccccccccchhccCCCCCC-CHH--
Q 037346 961 LPLVLRGRTGSGKSTLIQTLFRIVESTAGHILIDGKDISLIGLHDLRTRLSIIPQDPTMFEGTTRSNLDPLEEH-ADE-- 1037 (1156)
Q Consensus 961 ~~~vL~G~SGsGKSTL~~lL~rl~~p~~G~I~idG~di~~i~~~~LR~~i~~VpQdp~LF~gTIr~Nl~~~~~~-~de-- 1037 (1156)
+.++|.|+||||||||+++|+|+++ ++| |.+||.++.++. .+++++++++|+. .|+ +.|+...... ++.
T Consensus 2 ~~i~i~G~nG~GKTTll~~l~g~~~-~~G-i~~~g~~~~~~~--~~~~~ig~~~~~~---~g~-~~~l~~~~~~~~~~~~ 73 (189)
T 2i3b_A 2 RHVFLTGPPGVGKTTLIHKASEVLK-SSG-VPVDGFYTEEVR--QGGRRIGFDVVTL---SGT-RGPLSRVGLEPPPGKR 73 (189)
T ss_dssp CCEEEESCCSSCHHHHHHHHHHHHH-HTT-CCCEEEECCEEE--TTSSEEEEEEEET---TSC-EEEEEECCCCCCSSSC
T ss_pred CEEEEECCCCChHHHHHHHHHhhcc-cCC-EEEcCEecchhH--hhhceEEEEEEec---ccc-eehhhcccccCCcccc
Confidence 4568899999999999999999999 999 999999987553 5789999999996 443 3444321100 000
Q ss_pred --HH------HHHHHHcCCChHHHhhcCCccccc---cccccCCCEEEEec--CCcCCCHHHHHHHHHHHHHhcCCceEE
Q 037346 1038 --QI------WEALDKCQLGDEVRKKKGKLDSQG---RVLLKKSKVLVLDE--ATASVDTATDNQIQQTLRQHFSDCTVV 1104 (1156)
Q Consensus 1038 --ei------~~al~~~~l~~~i~~lp~gl~s~A---RALLr~~~ILiLDE--aTS~LD~~te~~I~~~l~~~~~~~TvI 1104 (1156)
.+ ....++.. +...+ +|++++|+|||||| ||.+.|.+..+.|.+.+++ ..|+|
T Consensus 74 ~~~v~~~~~~ls~~er~~-----------~~~l~~~a~A~~~~~dvlilDE~g~~~~~~~~~~~~l~~~l~~---~~~~i 139 (189)
T 2i3b_A 74 ECRVGQYVVDLTSFEQLA-----------LPVLRNADCSSGPGQRVCVIDEIGKMELFSQLFIQAVRQTLST---PGTII 139 (189)
T ss_dssp CEESSSSEECHHHHHTTT-----------TTTTCCCCCCCSSCCCCEEECCCSTTTTTCSHHHHHHHHHHHC---SSCCE
T ss_pred ccccceEEEcchHHHHHH-----------HHHHhhhhHhhccCCCEEEEeCCCccccccHHHHHHHHHHHhC---CCcEE
Confidence 00 01111111 11222 47899999999999 8999999998888888874 33444
Q ss_pred ----EeecCcccccccCEEEEEeCcEEeeecChhHHhcCCCChHHHHHHHH
Q 037346 1105 ----TIAHRITSVLDSAMVLLLNHGLIKEYDSPTKLLENKSSSFAQLVAEY 1151 (1156)
Q Consensus 1105 ----~IaHrl~ti~~~D~I~Vl~~G~IvE~G~~~eLl~~~~g~f~~l~~~~ 1151 (1156)
+|+||.+ ...+|+|..+++|+|++... +|.+..+..+++..
T Consensus 140 lgti~vsh~~~-~~~vd~i~~~~~~~i~~~~~-----~nr~~~~~~i~~~~ 184 (189)
T 2i3b_A 140 LGTIPVPKGKP-LALVEEIRNRKDVKVFNVTK-----ENRNHLLPDIVTCV 184 (189)
T ss_dssp EEECCCCCSSC-CTTHHHHHTTCCSEEEECCS-----SSGGGHHHHHHHHH
T ss_pred EEEeecCCCCc-hHHHHHHeecCCcEEEEeCh-----HhHHHHHHHHHHHH
Confidence 4459976 56789999999999998653 23455666665543
|
| >3thx_B DNA mismatch repair protein MSH3; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 3thw_B* 3thy_B* 3thz_B* | Back alignment and structure |
|---|
Probab=99.57 E-value=5.1e-16 Score=196.14 Aligned_cols=157 Identities=15% Similarity=0.088 Sum_probs=101.6
Q ss_pred cEEEeeeEEEe----CCCCCCCccccceEEeeCCeEEEEEcCCCCChHHHHHHHhCCCCCC-CcEEEEcCeEEEEecCCc
Q 037346 357 AIEIIDGSFSW----DFSSPNPTLRNINLKVFHGMRVAVCGTVGSGKSSCLSCILGGVPKE-SGIIRLCGTKAYVAQSPW 431 (1156)
Q Consensus 357 ~i~~~~~~f~~----~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKSTll~~i~g~~~~~-~G~i~~~g~~~~v~Q~~~ 431 (1156)
.+.+++...-. -..++.++++|++|++++|++++|+|||||||||||+++.+..-.. .| .++|++..
T Consensus 640 ~i~i~~~rHP~le~~~~~~~~~V~ndvsl~~~~g~i~~ItGPNGaGKSTlLr~i~~i~~~aq~g--------~~vpa~~~ 711 (918)
T 3thx_B 640 KIVIKNGRHPVIDVLLGEQDQYVPNNTDLSEDSERVMIITGPNMGGKSSYIKQVALITIMAQIG--------SYVPAEEA 711 (918)
T ss_dssp EEEEEEECCHHHHHHTCSCSSSCCEEEEECTTSCCEEEEESCCCHHHHHHHHHHHHHHHHHHHT--------CCBSSSEE
T ss_pred cEEEEeccchhhhhhhccCCceecccccccCCCCeEEEEECCCCCchHHHHHHHHHHHHHhhcC--------ccccchhh
Confidence 57776653211 0112468999999999999999999999999999999986431110 01 12222110
Q ss_pred CCCccHHHHhhcCCCCCHHHHHHHHHHhCCchhhhhCCCCCccccccCCCCCCHHHHHHHHHHHhhccCCCeeeeeCCCC
Q 037346 432 IQSGKIEENILFGKEMDRERYERVLEACSLKKDLEVLPFGDQTIIGERGINLSGGQKQRIQIARPLYQDADIFLLDDPFS 511 (1156)
Q Consensus 432 ~~~~ti~eni~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~t~v~~~g~~LSgGqkqRi~lAral~~~~~illlDep~s 511 (1156)
. ..+.++|. ...++.+. +..+.+++|+|++|+..++++ +.+|+++|||||++
T Consensus 712 ~--i~~~d~i~--------------~~ig~~d~-----------l~~~~stfs~em~~~~~il~~-a~~p~LlLLDEP~~ 763 (918)
T 3thx_B 712 T--IGIVDGIF--------------TRMGAADN-----------IYKGRSTFMEELTDTAEIIRK-ATSQSLVILDELGR 763 (918)
T ss_dssp E--EECCSEEE--------------EEC---------------------CCHHHHHHHHHHHHHH-CCTTCEEEEESTTT
T ss_pred h--hhHHHHHH--------------HhCChHHH-----------HHHhHHHhhHHHHHHHHHHHh-ccCCCEEEEeCCCC
Confidence 0 00001110 00011111 122336799999999999999 78999999999999
Q ss_pred CcCHHHHHHHHHHHHh----cCCCEEEEEccCCCccccCCEE
Q 037346 512 PVDDHTGAHLFKFCWV----SSSKTVIYATHQVEFLPAADLI 549 (1156)
Q Consensus 512 ~lD~~~~~~i~~~~~~----~~~~tvi~vtH~~~~~~~~d~i 549 (1156)
|+|+.....+...++. ..|.|+|++||+.+....||+.
T Consensus 764 GlD~~~~~~i~~~il~~L~~~~g~tvl~vTH~~el~~l~~~~ 805 (918)
T 3thx_B 764 GTSTHDGIAIAYATLEYFIRDVKSLTLFVTHYPPVCELEKNY 805 (918)
T ss_dssp TSCHHHHHHHHHHHHHHHHHTTCCEEEEECSCGGGGGHHHHT
T ss_pred CCCHHHHHHHHHHHHHHHHHhcCCeEEEEeCcHHHHHHHhhc
Confidence 9999988777643332 3589999999998877656543
|
| >1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome segregation, cell adhesion, kleisin, MIT cell cycle; HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=99.56 E-value=1.3e-14 Score=171.98 Aligned_cols=72 Identities=18% Similarity=0.228 Sum_probs=64.2
Q ss_pred CCCHHHHHHHHHHHhhc----cCCCeeeeeCCCCCcCHHHHHHHHHHHHhc--CCCEEEEEccCCCccccCCEEEEEe
Q 037346 482 NLSGGQKQRIQIARPLY----QDADIFLLDDPFSPVDDHTGAHLFKFCWVS--SSKTVIYATHQVEFLPAADLILVIK 553 (1156)
Q Consensus 482 ~LSgGqkqRi~lAral~----~~~~illlDep~s~lD~~~~~~i~~~~~~~--~~~tvi~vtH~~~~~~~~d~i~~l~ 553 (1156)
.||||||||++||++++ .+|+++|||||+++||+.....+.+.+... .+.++|++||+...+..||+++.+.
T Consensus 333 ~lS~Gq~~~~~la~~la~~~~~~~~~lllDEp~~~LD~~~~~~l~~~l~~~~~~~~~~ii~th~~~~~~~~d~~~~~~ 410 (430)
T 1w1w_A 333 YLSGGEKTVAALALLFAINSYQPSPFFVLDEVDAALDITNVQRIAAYIRRHRNPDLQFIVISLKNTMFEKSDALVGVY 410 (430)
T ss_dssp GSCHHHHHHHHHHHHHHHHTSSCCSEEEESSTTTTCCHHHHHHHHHHHHHHCBTTBEEEEECSCHHHHTTCSEEEEEE
T ss_pred cCCcchHHHHHHHHHHHHhcCCCCCEEEeCCCcccCCHHHHHHHHHHHHHHhcCCCEEEEEECCHHHHHhCCEEEEEE
Confidence 59999999999999999 689999999999999999999988766442 3679999999987777899999985
|
| >2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=99.56 E-value=4.2e-17 Score=186.00 Aligned_cols=163 Identities=15% Similarity=0.148 Sum_probs=115.1
Q ss_pred cCCCCceeeCCCCCCHHHHHHHHhhcccCCCceEEEcCeeCCCCC----hHHH--hhcCeeeccccc-cc-cccchhccC
Q 037346 958 APNLPLVLRGRTGSGKSTLIQTLFRIVESTAGHILIDGKDISLIG----LHDL--RTRLSIIPQDPT-MF-EGTTRSNLD 1029 (1156)
Q Consensus 958 ~~~~~~vL~G~SGsGKSTL~~lL~rl~~p~~G~I~idG~di~~i~----~~~L--R~~i~~VpQdp~-LF-~gTIr~Nl~ 1029 (1156)
.+++.++|.|+|||||||+++.|+|++.|++|+|.++|.|+.... +..+ |..+++|+|++. ++ ..|+++|+.
T Consensus 155 ~~g~vi~lvG~nGsGKTTll~~Lag~l~~~~G~V~l~g~D~~r~~a~eql~~~~~r~~i~~v~q~~~~~~p~~tv~e~l~ 234 (359)
T 2og2_A 155 RKPAVIMIVGVNGGGKTTSLGKLAHRLKNEGTKVLMAAGDTFRAAASDQLEIWAERTGCEIVVAEGDKAKAATVLSKAVK 234 (359)
T ss_dssp SSSEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEECCCCSCHHHHHHHHHHHHHHTCEEECCSSSSCCHHHHHHHHHH
T ss_pred CCCeEEEEEcCCCChHHHHHHHHHhhccccCCEEEEecccccccchhHHHHHHHHhcCeEEEEecccccChhhhHHHHHH
Confidence 345556899999999999999999999999999999999987653 2333 567999999987 55 458899985
Q ss_pred CCC-CCCHHHHHHHHHHcCCChHHHhhcCCcc----ccccccccCCC--EEEEecCCcCCCHHHHHHHHHHHHHhcCCce
Q 037346 1030 PLE-EHADEQIWEALDKCQLGDEVRKKKGKLD----SQGRVLLKKSK--VLVLDEATASVDTATDNQIQQTLRQHFSDCT 1102 (1156)
Q Consensus 1030 ~~~-~~~deei~~al~~~~l~~~i~~lp~gl~----s~ARALLr~~~--ILiLDEaTS~LD~~te~~I~~~l~~~~~~~T 1102 (1156)
... ...|. ..++.+|+.+....++..|. ..|||+..+|+ +|+|| ||+++|+.+.. +.+.+ ..+.|
T Consensus 235 ~~~~~~~d~---~lldt~Gl~~~~~~~~~eLSkqr~~iaral~~~P~e~lLvLD-pttglD~~~~~---~~~~~-~~g~t 306 (359)
T 2og2_A 235 RGKEEGYDV---VLCDTSGRLHTNYSLMEELIACKKAVGKIVSGAPNEILLVLD-GNTGLNMLPQA---REFNE-VVGIT 306 (359)
T ss_dssp HHHHTTCSE---EEEECCCCSSCCHHHHHHHHHHHHHHHHHSTTCCSEEEEEEE-GGGGGGGHHHH---HHHHH-HTCCC
T ss_pred HHHhCCCHH---HHHHhcCCChhhhhHHHHHHHHHHHHHHHHhcCCCceEEEEc-CCCCCCHHHHH---HHHHH-hcCCe
Confidence 321 00111 23445555443333333332 23899999999 99999 99999998763 22322 13789
Q ss_pred EEEeecC---------ccccc-ccCEEEEEeCcEEe
Q 037346 1103 VVTIAHR---------ITSVL-DSAMVLLLNHGLIK 1128 (1156)
Q Consensus 1103 vI~IaHr---------l~ti~-~~D~I~Vl~~G~Iv 1128 (1156)
+|++||- ++.+. ..+.|..+..|+.+
T Consensus 307 ~iiiThlD~~~~gG~~lsi~~~~~~pI~~ig~Ge~~ 342 (359)
T 2og2_A 307 GLILTKLDGSARGGCVVSVVEELGIPVKFIGVGEAV 342 (359)
T ss_dssp EEEEESCTTCSCTHHHHHHHHHHCCCEEEEECSSSG
T ss_pred EEEEecCcccccccHHHHHHHHhCCCEEEEeCCCCh
Confidence 9999992 33332 35789999999754
|
| >1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11 | Back alignment and structure |
|---|
Probab=99.55 E-value=6.7e-16 Score=177.11 Aligned_cols=155 Identities=17% Similarity=0.096 Sum_probs=100.5
Q ss_pred Cccccc-eEEeeCCeEEEEEcCCCCChHHHHHHHhCCC--CCCC----cE-EEEcCe-------EEEEecCCcCCCccHH
Q 037346 374 PTLRNI-NLKVFHGMRVAVCGTVGSGKSSCLSCILGGV--PKES----GI-IRLCGT-------KAYVAQSPWIQSGKIE 438 (1156)
Q Consensus 374 ~~l~~i-~l~i~~g~~~~ivG~~GsGKSTll~~i~g~~--~~~~----G~-i~~~g~-------~~~v~Q~~~~~~~ti~ 438 (1156)
+.|+++ +..+++|++++|+||||||||||++.+++.+ +|++ |. |++++. +++++|.+.++..++.
T Consensus 118 ~~LD~lL~ggi~~G~i~~I~G~~GsGKTTL~~~l~~~~~~~~~~Gg~~G~vi~i~~e~~~~~~~i~~i~q~~~~~~~~v~ 197 (349)
T 1pzn_A 118 KSLDKLLGGGIETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTFRPERIREIAQNRGLDPDEVL 197 (349)
T ss_dssp HHHHHHHTSSEESSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTSCSCEEEEEESSSCCCHHHHHHHHHTTTCCHHHHG
T ss_pred HHHHHHhcCCCCCCeEEEEECCCCCCHHHHHHHHHHHhccchhcCCCCCeEEEEeCCCCCCHHHHHHHHHHcCCCHHHHh
Confidence 457766 6899999999999999999999999999998 6666 56 666652 2344555444444555
Q ss_pred HHhhcCCCCCHHHHHHHHHHhCCchhhhhCCCCCccccccCCCCCCHHHHHHHHHHHhhc-------cCCCeeeeeCCCC
Q 037346 439 ENILFGKEMDRERYERVLEACSLKKDLEVLPFGDQTIIGERGINLSGGQKQRIQIARPLY-------QDADIFLLDDPFS 511 (1156)
Q Consensus 439 eni~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~t~v~~~g~~LSgGqkqRi~lAral~-------~~~~illlDep~s 511 (1156)
+||.+...++ |++|+|++.++++++ .+|+++|+||||+
T Consensus 198 ~ni~~~~~~~-----------------------------------~~~~~~~l~~~~~~~~~lS~G~~~~~llIlDs~ta 242 (349)
T 1pzn_A 198 KHIYVARAFN-----------------------------------SNHQMLLVQQAEDKIKELLNTDRPVKLLIVDSLTS 242 (349)
T ss_dssp GGEEEEECCS-----------------------------------HHHHHHHHHHHHHHHHHSSSSSSCEEEEEEETSST
T ss_pred hCEEEEecCC-----------------------------------hHHHHHHHHHHHHHHHHhccccCCCCEEEEeCchH
Confidence 5554432211 467788888888887 6899999999999
Q ss_pred CcCHHH------------HHHHHHHHHh---cCCCEEEEEccCCCcccc-CCEEEEEeCCeEEEccCh
Q 037346 512 PVDDHT------------GAHLFKFCWV---SSSKTVIYATHQVEFLPA-ADLILVIKDGKITQAGKY 563 (1156)
Q Consensus 512 ~lD~~~------------~~~i~~~~~~---~~~~tvi~vtH~~~~~~~-~d~i~~l~~G~i~~~g~~ 563 (1156)
++|+.. ..++...+.. ..+.|+|+++|....... ++.......|++++.+..
T Consensus 243 ~ld~~~~~~~~~~~r~~~~~~~l~~L~~la~~~~~tvii~~h~~~~~~~~~~~~~~~~~G~~l~~~~~ 310 (349)
T 1pzn_A 243 HFRSEYIGRGALAERQQKLAKHLADLHRLANLYDIAVFVTNQVQARPDAFFGDPTRPIGGHILAHSAT 310 (349)
T ss_dssp THHHHCCSTTTHHHHHHHHHHHHHHHHHHHHHTTCEEEEEEECC---------------CCCCCTTCS
T ss_pred hhhhhhcccccHHHHHHHHHHHHHHHHHHHHHcCcEEEEEcccccccccccCCccccCCcceEeecCc
Confidence 999862 1223332222 358999999998764432 334555666776655543
|
| >2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A* | Back alignment and structure |
|---|
Probab=99.55 E-value=1.9e-16 Score=178.15 Aligned_cols=153 Identities=12% Similarity=0.135 Sum_probs=81.7
Q ss_pred eeeEEEeCCCCCCCccccceEEeeCCeEEEEEcCCCCChHHHHHHHhCC-CCCCCcEEEEcC----------eEEEEecC
Q 037346 361 IDGSFSWDFSSPNPTLRNINLKVFHGMRVAVCGTVGSGKSSCLSCILGG-VPKESGIIRLCG----------TKAYVAQS 429 (1156)
Q Consensus 361 ~~~~f~~~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKSTll~~i~g~-~~~~~G~i~~~g----------~~~~v~Q~ 429 (1156)
+|+++.|. ++.++++++|+| +|+|+||+|||||++.|.|. ..|++| +.++| .++|++|+
T Consensus 2 ~~l~~~~~---~~~~l~~~~~~I------~lvG~nG~GKSTLl~~L~g~~~~~~~g-i~~~g~~~~~t~~~~~~~~~~q~ 71 (301)
T 2qnr_A 2 SNLPNQVH---RKSVKKGFEFTL------MVVGESGLGKSTLINSLFLTDLYPERV-ISGAAEKIERTVQIEASTVEIEE 71 (301)
T ss_dssp -------------------CEEE------EEEEETTSSHHHHHHHHHC-------------------------CEEEEC-
T ss_pred CCCcceEC---CEEEEcCCCEEE------EEECCCCCCHHHHHHHHhCCCccCCCC-cccCCcccCCcceEeeEEEEecC
Confidence 36778885 457999999988 99999999999999999997 888888 54433 35788887
Q ss_pred CcCC-CccHHHHhhcCCCCCH-HHHHHHHHHhCCchhhhhCCCCCccccccCCCCCCHHHHHHHHHHHhhccCCCeeeee
Q 037346 430 PWIQ-SGKIEENILFGKEMDR-ERYERVLEACSLKKDLEVLPFGDQTIIGERGINLSGGQKQRIQIARPLYQDADIFLLD 507 (1156)
Q Consensus 430 ~~~~-~~ti~eni~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~g~~t~v~~~g~~LSgGqkqRi~lAral~~~~~illlD 507 (1156)
+..+ ..|+.|+..++...+. ++++.+.+. +.+.. .....++|||||||+.+|||+. ++++|
T Consensus 72 ~~~~~~ltv~Dt~g~~~~~~~~e~~~~l~~~--l~~~~-----------~~~~~~~sgg~rqrv~~ara~~----ll~ld 134 (301)
T 2qnr_A 72 RGVKLRLTVVDTPGYGDAINCRDCFKTIISY--IDEQF-----------ERYLHDESGLNRRHIIDNRVHC----CFYFI 134 (301)
T ss_dssp --CCEEEEEEEEC-----------CTTHHHH--HHHHH-----------HHHHHHHTSSCCTTCCCCCCCE----EEEEE
T ss_pred CCcccCcchhhhhhhhhhcCcHHHHHHHHHH--HHHHH-----------HHHHHHhCHHhhhhhhhhhhhh----eeeee
Confidence 7654 4589999888643211 222222221 11111 1223479999999999999986 99999
Q ss_pred CCCCC-cCHHHHHHHHHHHHhcCCCEEEEEccCCC
Q 037346 508 DPFSP-VDDHTGAHLFKFCWVSSSKTVIYATHQVE 541 (1156)
Q Consensus 508 ep~s~-lD~~~~~~i~~~~~~~~~~tvi~vtH~~~ 541 (1156)
|||++ ||+... .+++.+....+.++|+.+||+.
T Consensus 135 ePt~~~Ld~~~~-~~l~~l~~~~~iilV~~K~Dl~ 168 (301)
T 2qnr_A 135 SPFGHGLKPLDV-AFMKAIHNKVNIVPVIAKADTL 168 (301)
T ss_dssp CSSSSSCCHHHH-HHHHHHTTTSCEEEEECCGGGS
T ss_pred cCcccCCCHHHH-HHHHHHHhcCCEEEEEEeCCCC
Confidence 99985 999874 3334332233678888899874
|
| >2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=99.54 E-value=7.9e-16 Score=169.04 Aligned_cols=130 Identities=22% Similarity=0.222 Sum_probs=95.2
Q ss_pred EEEEEEEEEcCCCCceeeCCCCCCHHHHHHHHhhcccCC-CceEEEcCeeCCCCChHHHhhcCeeeccccccccccchhc
Q 037346 949 NIRHLQVRYAPNLPLVLRGRTGSGKSTLIQTLFRIVEST-AGHILIDGKDISLIGLHDLRTRLSIIPQDPTMFEGTTRSN 1027 (1156)
Q Consensus 949 ~~~~Vsf~Y~~~~~~vL~G~SGsGKSTL~~lL~rl~~p~-~G~I~idG~di~~i~~~~LR~~i~~VpQdp~LF~gTIr~N 1027 (1156)
.++|++ ..+++.++|.||||||||||+++|+|+++|+ +|+|.++|.++..+. +..+++++|+.+ +
T Consensus 16 vl~~i~--i~~g~~v~i~Gp~GsGKSTll~~l~g~~~~~~~G~I~~~g~~i~~~~----~~~~~~v~q~~~--------g 81 (261)
T 2eyu_A 16 KVLELC--HRKMGLILVTGPTGSGKSTTIASMIDYINQTKSYHIITIEDPIEYVF----KHKKSIVNQREV--------G 81 (261)
T ss_dssp HHHHGG--GCSSEEEEEECSTTCSHHHHHHHHHHHHHHHCCCEEEEEESSCCSCC----CCSSSEEEEEEB--------T
T ss_pred HHHHHh--hCCCCEEEEECCCCccHHHHHHHHHHhCCCCCCCEEEEcCCcceeec----CCcceeeeHHHh--------C
Confidence 355666 4567777899999999999999999999998 999999998875442 334556665311 1
Q ss_pred cCCCCCCCHHHHHHHHHHcCCChHHHhhcCCccccccccccCCCEEEEecCCcCCCHHHHHHHHHHHHHhcCCceEEEee
Q 037346 1028 LDPLEEHADEQIWEALDKCQLGDEVRKKKGKLDSQGRVLLKKSKVLVLDEATASVDTATDNQIQQTLRQHFSDCTVVTIA 1107 (1156)
Q Consensus 1028 l~~~~~~~deei~~al~~~~l~~~i~~lp~gl~s~ARALLr~~~ILiLDEaTS~LD~~te~~I~~~l~~~~~~~TvI~Ia 1107 (1156)
++. ..+ -.+.||||..+|++|+||||| |+++...+ ++....+.||++++
T Consensus 82 l~~------------------~~l-------~~~la~aL~~~p~illlDEp~---D~~~~~~~---l~~~~~g~~vl~t~ 130 (261)
T 2eyu_A 82 EDT------------------KSF-------ADALRAALREDPDVIFVGEMR---DLETVETA---LRAAETGHLVFGTL 130 (261)
T ss_dssp TTB------------------SCH-------HHHHHHHHHHCCSEEEESCCC---SHHHHHHH---HHHHHTTCEEEEEE
T ss_pred CCH------------------HHH-------HHHHHHHHhhCCCEEEeCCCC---CHHHHHHH---HHHHccCCEEEEEe
Confidence 110 011 124489999999999999999 99885543 33334589999999
Q ss_pred cCcccccccCEEEEEe
Q 037346 1108 HRITSVLDSAMVLLLN 1123 (1156)
Q Consensus 1108 Hrl~ti~~~D~I~Vl~ 1123 (1156)
|+.+....|||+++|.
T Consensus 131 H~~~~~~~~dri~~l~ 146 (261)
T 2eyu_A 131 HTNTAIDTIHRIVDIF 146 (261)
T ss_dssp CCSSHHHHHHHHHHTS
T ss_pred CcchHHHHHHHHhhhc
Confidence 9988777788876554
|
| >2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium} | Back alignment and structure |
|---|
Probab=99.54 E-value=7.9e-18 Score=197.99 Aligned_cols=175 Identities=10% Similarity=0.037 Sum_probs=131.3
Q ss_pred EEEEEEEEEcCCCCceeeCCCCCCHHHHHHHHhhcccCCCceEEEcCe---eCCCCC-----hHHHhhcCeeeccc--cc
Q 037346 949 NIRHLQVRYAPNLPLVLRGRTGSGKSTLIQTLFRIVESTAGHILIDGK---DISLIG-----LHDLRTRLSIIPQD--PT 1018 (1156)
Q Consensus 949 ~~~~Vsf~Y~~~~~~vL~G~SGsGKSTL~~lL~rl~~p~~G~I~idG~---di~~i~-----~~~LR~~i~~VpQd--p~ 1018 (1156)
.++++ |...+++..+|.|+||||||||+++|.|+++|++|.|.++|. ++.++. ...+++.+++|+|+ +.
T Consensus 147 vld~v-l~i~~Gq~~~IvG~sGsGKSTLl~~Iag~~~~~~G~i~~~G~r~~ev~~~~~~~~~~~~l~r~i~~v~q~~~~~ 225 (438)
T 2dpy_A 147 AINAL-LTVGRGQRMGLFAGSGVGKSVLLGMMARYTRADVIVVGLIGERGREVKDFIENILGPDGRARSVVIAAPADVSP 225 (438)
T ss_dssp HHHHH-SCCBTTCEEEEEECTTSSHHHHHHHHHHHSCCSEEEEEEESCCHHHHHHHHHTTTHHHHHHTEEEEEECTTSCH
T ss_pred EEeee-EEecCCCEEEEECCCCCCHHHHHHHHhcccCCCeEEEEEeceecHHHHHHHHhhccccccCceEEEEECCCCCH
Confidence 56677 777778888899999999999999999999999999999998 565432 45688999999994 34
Q ss_pred cccccchhccCCCCCCCHHHHHHHHHHcCC---ChHHHhhcCCccccccccccCCCEEEEecCCcCCCHHHHHHHHHHHH
Q 037346 1019 MFEGTTRSNLDPLEEHADEQIWEALDKCQL---GDEVRKKKGKLDSQGRVLLKKSKVLVLDEATASVDTATDNQIQQTLR 1095 (1156)
Q Consensus 1019 LF~gTIr~Nl~~~~~~~deei~~al~~~~l---~~~i~~lp~gl~s~ARALLr~~~ILiLDEaTS~LD~~te~~I~~~l~ 1095 (1156)
...-|+.+|+... .+.... +.... -+.+..+.+|+.-.+=| +++|++ |+++|+.+...+.+.++
T Consensus 226 ~~~~~v~~~~~~~-----ae~~~~-~~~~v~~~ld~l~~lS~g~qrvslA-l~~p~~------t~glD~~~~~~l~~ll~ 292 (438)
T 2dpy_A 226 LLRMQGAAYATRI-----AEDFRD-RGQHVLLIMDSLTRYAMAQREIALA-IGEPPA------TKGYPPSVFAKLPALVE 292 (438)
T ss_dssp HHHHHHHHHHHHH-----HHHHHT-TTCEEEEEEECHHHHHHHHHHHHHH-TTCCCC------SSSCCTTHHHHHHHHHT
T ss_pred HHHHHHHHHHHHH-----HHHHHh-CCCCHHHHHHhHHHHHHHHHHHHHH-hCCCcc------cccCCHHHHHHHHHHHH
Confidence 4456888887531 111110 00111 12233333333111223 788888 99999999999999998
Q ss_pred HhcC-----Cc-----eEEEeecCcccccccCEEEEEeCcEEeeecChhHHhc
Q 037346 1096 QHFS-----DC-----TVVTIAHRITSVLDSAMVLLLNHGLIKEYDSPTKLLE 1138 (1156)
Q Consensus 1096 ~~~~-----~~-----TvI~IaHrl~ti~~~D~I~Vl~~G~IvE~G~~~eLl~ 1138 (1156)
+..+ ++ ||+++||+++ ...||++++|.+|+|++.|+++++..
T Consensus 293 r~~~~~~~~GsiT~~~tVlv~tHdl~-~~iad~v~~l~dG~Ivl~~~~~~~~~ 344 (438)
T 2dpy_A 293 RAGNGIHGGGSITAFYTVLTEGDDQQ-DPIADSARAILDGHIVLSRRLAEAGH 344 (438)
T ss_dssp TCSCCSTTSCEEEEEEEEECSSSCSC-CHHHHHHHHHSSEEEEECHHHHHTTC
T ss_pred HHHhccCCCCcccceeEEEEeCCCcc-chhhceEEEEeCcEEEEeCCHHHccC
Confidence 8755 43 9999999999 77799999999999999999998875
|
| >2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A* | Back alignment and structure |
|---|
Probab=99.54 E-value=2.1e-17 Score=191.23 Aligned_cols=165 Identities=18% Similarity=0.165 Sum_probs=129.0
Q ss_pred CccccceEEeeCCeEEEEEcCCCCChHHHHHHHhCCCCCC-CcEEEEcC---------eEEEEec-----CCcCCCccHH
Q 037346 374 PTLRNINLKVFHGMRVAVCGTVGSGKSSCLSCILGGVPKE-SGIIRLCG---------TKAYVAQ-----SPWIQSGKIE 438 (1156)
Q Consensus 374 ~~l~~i~l~i~~g~~~~ivG~~GsGKSTll~~i~g~~~~~-~G~i~~~g---------~~~~v~Q-----~~~~~~~ti~ 438 (1156)
++|++++ +++|++++|+||||||||||+++|+|+++|+ +|.|.+.+ .++|++| ++..|..+++
T Consensus 126 ~~l~~l~--~~~g~~i~ivG~~GsGKTTll~~l~~~~~~~~~g~I~~~e~~~e~~~~~~~~~v~Q~~~g~~~~~~~~~l~ 203 (372)
T 2ewv_A 126 DKVLELC--HRKMGLILVTGPTGSGKSTTIASMIDYINQTKSYHIITIEDPIEYVFKHKKSIVNQREVGEDTKSFADALR 203 (372)
T ss_dssp SSHHHHT--TSSSEEEEEECSSSSSHHHHHHHHHHHHHHHSCCEEEEEESSCCSCCCCSSSEEEEEEBTTTBSCSHHHHH
T ss_pred HHHHHHh--hcCCCEEEEECCCCCCHHHHHHHHHhhcCcCCCcEEEEecccHhhhhccCceEEEeeecCCCHHHHHHHHH
Confidence 3567665 8999999999999999999999999999998 89996533 4678999 7888899999
Q ss_pred HHhhcCCCC-------CHHHHHHHHHHhCCchh----------------h-------------hhCCCCCccccccCCCC
Q 037346 439 ENILFGKEM-------DRERYERVLEACSLKKD----------------L-------------EVLPFGDQTIIGERGIN 482 (1156)
Q Consensus 439 eni~~~~~~-------~~~~~~~~~~~~~l~~~----------------~-------------~~~~~g~~t~v~~~g~~ 482 (1156)
+|+....+. +.+....+++++..... + ..++.+.++.|++++..
T Consensus 204 ~~L~~~pd~illdE~~d~e~~~~~l~~~~~g~~vi~t~H~~~~~~~~~rl~~l~~~~~~~~~~~~l~~~l~~vv~qrl~~ 283 (372)
T 2ewv_A 204 AALREDPDVIFVGEMRDLETVETALRAAETGHLVFGTLHTNTAIDTIHRIVDIFPLNQQEQVRIVLSFILQGIISQRLLP 283 (372)
T ss_dssp HHTTSCCSEEEESCCCSHHHHHHHHHHHTTTCEEEECCCCCSHHHHHHHHHHTSCTTSHHHHHHHHHHSCCEEEEEEEEE
T ss_pred HHhhhCcCEEEECCCCCHHHHHHHHHHHhcCCEEEEEECcchHHHHHHHHHHhcCcccchhHHHHHHHhhhEEEEEEeEe
Confidence 999876443 77777777776543110 1 12345778889998888
Q ss_pred CCHHHHHHHHHHHhhccCCCe--eeeeCCCCCcCHHH---H-----HHHHHHHHh--cCCCEEEEEccCCCc
Q 037346 483 LSGGQKQRIQIARPLYQDADI--FLLDDPFSPVDDHT---G-----AHLFKFCWV--SSSKTVIYATHQVEF 542 (1156)
Q Consensus 483 LSgGqkqRi~lAral~~~~~i--lllDep~s~lD~~~---~-----~~i~~~~~~--~~~~tvi~vtH~~~~ 542 (1156)
+||| ||+++||+++.+|++ +|+||+|++||... . +.+.+.++. .+|+|.+.+.|++..
T Consensus 284 ~~~G--~R~~i~e~l~~~~~i~~li~d~~~~~l~~~~~~~~~~~g~~~~~~~~~~~~~~g~t~~~~a~r~~~ 353 (372)
T 2ewv_A 284 KIGG--GRVLAYELLIPNTAIRNLIRENKLQQVYSLMQSGQAETGMQTMNQTLYKLYKQGLITLEDAMEASP 353 (372)
T ss_dssp CSSS--SEEEEEEECCCCSHHHHHHHHTCHHHHHHHCC-------CBCSHHHHHHTTTTSSSCTTTTTSSCS
T ss_pred cCCC--CEEEEEEEeeCCHHHHHHHHcCCHHHHHHHHHHhHHhcCCccHHHHHHHHHHCCCCCHHHHHHHcC
Confidence 9999 899999999999999 99999999999652 1 123333333 578999999999864
|
| >3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A* | Back alignment and structure |
|---|
Probab=99.53 E-value=1.6e-15 Score=173.47 Aligned_cols=147 Identities=20% Similarity=0.190 Sum_probs=100.4
Q ss_pred eeeEEEeCCCCCCCccccceE-------EeeCCeEEEEEcCCCCChHHHHHHHhCCCCCC-CcEEEEcCeEEEEecCCcC
Q 037346 361 IDGSFSWDFSSPNPTLRNINL-------KVFHGMRVAVCGTVGSGKSSCLSCILGGVPKE-SGIIRLCGTKAYVAQSPWI 432 (1156)
Q Consensus 361 ~~~~f~~~~~~~~~~l~~i~l-------~i~~g~~~~ivG~~GsGKSTll~~i~g~~~~~-~G~i~~~g~~~~v~Q~~~~ 432 (1156)
.+++++|... ..+.|+++.+ ...+|++++|+||||||||||+++|+|+++|+ .|.|... .+|.
T Consensus 92 ~~~~iR~~~~-~~~~l~~lg~~~~l~~l~~~~~g~i~I~GptGSGKTTlL~~l~g~~~~~~~~~i~t~-------ed~~- 162 (356)
T 3jvv_A 92 AGAVFRTIPS-KVLTMEELGMGEVFKRVSDVPRGLVLVTGPTGSGKSTTLAAMLDYLNNTKYHHILTI-------EDPI- 162 (356)
T ss_dssp EEEEEEEECC-SCCCTTTTTCCHHHHHHHHCSSEEEEEECSTTSCHHHHHHHHHHHHHHHCCCEEEEE-------ESSC-
T ss_pred cEEEEEECCC-CCCCHHHcCChHHHHHHHhCCCCEEEEECCCCCCHHHHHHHHHhcccCCCCcEEEEc-------cCcH-
Confidence 3567777532 4567777776 77899999999999999999999999999987 4555321 1111
Q ss_pred CCccHHHHhhcCCCCCHHHHHHHHHHhCCchhhhhCCCCCccccccCCCCCCHHHHHHHHHHHhhccCCCeeeeeCCCCC
Q 037346 433 QSGKIEENILFGKEMDRERYERVLEACSLKKDLEVLPFGDQTIIGERGINLSGGQKQRIQIARPLYQDADIFLLDDPFSP 512 (1156)
Q Consensus 433 ~~~ti~eni~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~t~v~~~g~~LSgGqkqRi~lAral~~~~~illlDep~s~ 512 (1156)
.+..+.. .+ .+. +..++.. .++-.+ +|||||..+||++++|||+
T Consensus 163 ---------e~~~~~~---------~~----~v~------q~~~~~~--~~~~~~----~La~aL~~~PdvillDEp~-- 206 (356)
T 3jvv_A 163 ---------EFVHESK---------KC----LVN------QREVHRD--TLGFSE----ALRSALREDPDIILVGEMR-- 206 (356)
T ss_dssp ---------CSCCCCS---------SS----EEE------EEEBTTT--BSCHHH----HHHHHTTSCCSEEEESCCC--
T ss_pred ---------Hhhhhcc---------cc----cee------eeeeccc--cCCHHH----HHHHHhhhCcCEEecCCCC--
Confidence 1110000 00 000 0111221 133322 9999999999999999999
Q ss_pred cCHHHHHHHHHHHHhcCCCEEEEEccCCCccccCCEEEEEeCC
Q 037346 513 VDDHTGAHLFKFCWVSSSKTVIYATHQVEFLPAADLILVIKDG 555 (1156)
Q Consensus 513 lD~~~~~~i~~~~~~~~~~tvi~vtH~~~~~~~~d~i~~l~~G 555 (1156)
|.++.+.+.+.. ..|+|+++++|+.+.+..+||++.|..|
T Consensus 207 -d~e~~~~~~~~~--~~G~~vl~t~H~~~~~~~~dRli~l~~~ 246 (356)
T 3jvv_A 207 -DLETIRLALTAA--ETGHLVFGTLHTTSAAKTIDRVVDVFPA 246 (356)
T ss_dssp -SHHHHHHHHHHH--HTTCEEEEEESCSSHHHHHHHHHHTSCH
T ss_pred -CHHHHHHHHHHH--hcCCEEEEEEccChHHHHHHHHhhhcCc
Confidence 787766554432 4689999999999988779999888554
|
| >2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=99.52 E-value=5.8e-17 Score=165.93 Aligned_cols=98 Identities=16% Similarity=0.203 Sum_probs=76.9
Q ss_pred eEEEEEcCCCCChHHHHHHHhCCCCCC---CcEEEEcCeE-----------------E----EEecCCcCCCccHHHHhh
Q 037346 387 MRVAVCGTVGSGKSSCLSCILGGVPKE---SGIIRLCGTK-----------------A----YVAQSPWIQSGKIEENIL 442 (1156)
Q Consensus 387 ~~~~ivG~~GsGKSTll~~i~g~~~~~---~G~i~~~g~~-----------------~----~v~Q~~~~~~~ti~eni~ 442 (1156)
++++|+|+||||||||+++|+|+++|+ .|.|.++|.- + +++|++++| +++
T Consensus 3 ~~v~IvG~SGsGKSTL~~~L~~~~~~~g~~~G~I~~dg~~i~~~~~~~~d~~r~~~ig~~~~~~~~~~~~~---i~~--- 76 (171)
T 2f1r_A 3 LILSIVGTSDSGKTTLITRMMPILRERGLRVAVVKRHAHGDFEIDKEGKDSWKIYNSGADVVIASPVKLAF---IRR--- 76 (171)
T ss_dssp CEEEEEESCHHHHHHHHHHHHHHHHHTTCCEEEEEC------------CHHHHHHHHTCEEEEECSSEEEE---EEE---
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhhhcCCceEEEEEcCcccccCCccchhHHHHHhcCCceEEECCCcEEE---Eec---
Confidence 589999999999999999999999998 8999987631 2 556655544 111
Q ss_pred cCCCCCHHHHHHHHHHhCCchhhhh-CCCCCccccccCCCCCCHHHHHHHHHHHhhccCCCee
Q 037346 443 FGKEMDRERYERVLEACSLKKDLEV-LPFGDQTIIGERGINLSGGQKQRIQIARPLYQDADIF 504 (1156)
Q Consensus 443 ~~~~~~~~~~~~~~~~~~l~~~~~~-~~~g~~t~v~~~g~~LSgGqkqRi~lAral~~~~~il 504 (1156)
.+++ . .+++.+.+.. +| |++|.++|+ |||||||||+||||++.+|+++
T Consensus 77 ----~~~~----~--~a~l~~~i~~~l~-g~dt~i~Eg---lSgGq~qri~lARall~~p~i~ 125 (171)
T 2f1r_A 77 ----VSEE----E--GNDLDWIYERYLS-DYDLVITEG---FSKAGKDRIVVVKKPEEVEHFR 125 (171)
T ss_dssp ----CCHH----H--HTCHHHHHHHHTT-TCSEEEEES---CGGGCCCEEEECSSGGGGGGGC
T ss_pred ----CChh----h--hhCHHHHHHhhCC-CCCEEEECC---cCCCCCcEEEEEecccCCCccC
Confidence 1111 1 5678888888 99 999999995 9999999999999999999874
|
| >2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A* | Back alignment and structure |
|---|
Probab=99.52 E-value=2.3e-16 Score=182.49 Aligned_cols=150 Identities=21% Similarity=0.213 Sum_probs=117.9
Q ss_pred CCCCceeeCCCCCCHHHHHHHHhhcccCC-CceEEEcCeeCCCCChHHHhhcCeeecc-----ccccccccchhccCCCC
Q 037346 959 PNLPLVLRGRTGSGKSTLIQTLFRIVEST-AGHILIDGKDISLIGLHDLRTRLSIIPQ-----DPTMFEGTTRSNLDPLE 1032 (1156)
Q Consensus 959 ~~~~~vL~G~SGsGKSTL~~lL~rl~~p~-~G~I~idG~di~~i~~~~LR~~i~~VpQ-----dp~LF~gTIr~Nl~~~~ 1032 (1156)
++..+++.|||||||||++++|+|+++|+ +|+|.+.|.++. + .+|+.+++|+| ++..|+++|+.||....
T Consensus 135 ~g~~i~ivG~~GsGKTTll~~l~~~~~~~~~g~I~~~e~~~e-~---~~~~~~~~v~Q~~~g~~~~~~~~~l~~~L~~~p 210 (372)
T 2ewv_A 135 KMGLILVTGPTGSGKSTTIASMIDYINQTKSYHIITIEDPIE-Y---VFKHKKSIVNQREVGEDTKSFADALRAALREDP 210 (372)
T ss_dssp SSEEEEEECSSSSSHHHHHHHHHHHHHHHSCCEEEEEESSCC-S---CCCCSSSEEEEEEBTTTBSCSHHHHHHHTTSCC
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhcCcCCCcEEEEecccHh-h---hhccCceEEEeeecCCCHHHHHHHHHHHhhhCc
Confidence 34446788999999999999999999998 899988776664 2 36788999999 89999999999997643
Q ss_pred CC-------CHHHHHHHHHHcCCChHH-------------H----------------hhcCCccc---------------
Q 037346 1033 EH-------ADEQIWEALDKCQLGDEV-------------R----------------KKKGKLDS--------------- 1061 (1156)
Q Consensus 1033 ~~-------~deei~~al~~~~l~~~i-------------~----------------~lp~gl~s--------------- 1061 (1156)
+. ++++++.+++.++....+ . .++.+++.
T Consensus 211 d~illdE~~d~e~~~~~l~~~~~g~~vi~t~H~~~~~~~~~rl~~l~~~~~~~~~~~~l~~~l~~vv~qrl~~~~~G~R~ 290 (372)
T 2ewv_A 211 DVIFVGEMRDLETVETALRAAETGHLVFGTLHTNTAIDTIHRIVDIFPLNQQEQVRIVLSFILQGIISQRLLPKIGGGRV 290 (372)
T ss_dssp SEEEESCCCSHHHHHHHHHHHTTTCEEEECCCCCSHHHHHHHHHHTSCTTSHHHHHHHHHHSCCEEEEEEEEECSSSSEE
T ss_pred CEEEECCCCCHHHHHHHHHHHhcCCEEEEEECcchHHHHHHHHHHhcCcccchhHHHHHHHhhhEEEEEEeEecCCCCEE
Confidence 32 567788888887642111 1 12333432
Q ss_pred -cccccccCCCE--EEEecCCcCCCHH----H-----HHHHHHHHHHhcCCceEEEeecCccc
Q 037346 1062 -QGRVLLKKSKV--LVLDEATASVDTA----T-----DNQIQQTLRQHFSDCTVVTIAHRITS 1112 (1156)
Q Consensus 1062 -~ARALLr~~~I--LiLDEaTS~LD~~----t-----e~~I~~~l~~~~~~~TvI~IaHrl~t 1112 (1156)
.+|+++.+|+| +|+||+|+++|.. + +..++++++...+|+|.+.+|||++.
T Consensus 291 ~i~e~l~~~~~i~~li~d~~~~~l~~~~~~~~~~~g~~~~~~~~~~~~~~g~t~~~~a~r~~~ 353 (372)
T 2ewv_A 291 LAYELLIPNTAIRNLIRENKLQQVYSLMQSGQAETGMQTMNQTLYKLYKQGLITLEDAMEASP 353 (372)
T ss_dssp EEEEECCCCSHHHHHHHHTCHHHHHHHCC-------CBCSHHHHHHTTTTSSSCTTTTTSSCS
T ss_pred EEEEEeeCCHHHHHHHHcCCHHHHHHHHHHhHHhcCCccHHHHHHHHHHCCCCCHHHHHHHcC
Confidence 16899999999 9999999999975 3 45789999988899999999999974
|
| >3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B | Back alignment and structure |
|---|
Probab=99.51 E-value=1.5e-15 Score=186.65 Aligned_cols=178 Identities=11% Similarity=0.133 Sum_probs=112.6
Q ss_pred eEEEEEEEEEEcCC----------------------CCceeeCCCCCCHHHHHHHHhhcccC-CCceEEEcCeeCCCC--
Q 037346 947 EVNIRHLQVRYAPN----------------------LPLVLRGRTGSGKSTLIQTLFRIVES-TAGHILIDGKDISLI-- 1001 (1156)
Q Consensus 947 ~I~~~~Vsf~Y~~~----------------------~~~vL~G~SGsGKSTL~~lL~rl~~p-~~G~I~idG~di~~i-- 1001 (1156)
.++++|+++.|+.. ..++|.|+||||||||+++|.|++.| ++|.|+++|.++...
T Consensus 10 ~i~~~~l~~~~~~~~r~ll~~id~l~~~gv~~~l~lp~iaIvG~nGsGKSTLL~~I~Gl~~P~~sG~vt~~g~~i~~~~~ 89 (608)
T 3szr_A 10 SVAENNLCSQYEEKVRPCIDLIDSLRALGVEQDLALPAIAVIGDQSSGKSSVLEALSGVALPRGSGIVTRCPLVLKLKKL 89 (608)
T ss_dssp ----------CHHHHHHHHHHHHHHHHHSCCSSCCCCCEECCCCTTSCHHHHHHHHHSCC-------CCCSCEEEEEEEC
T ss_pred hhhhhhhhHHHHHHHHHHHHHHHHHHhCCCCCcccCCeEEEECCCCChHHHHHHHHhCCCCCCCCCeEEEcCEEEEEecC
Confidence 47889999999521 12567799999999999999999988 799999999996322
Q ss_pred -ChHHHhhcCeeecccccccc-ccchhccCCCCCCCHHHHHHHHHHcCCChHHHhhcCCccccccccccCCCEEEEecC-
Q 037346 1002 -GLHDLRTRLSIIPQDPTMFE-GTTRSNLDPLEEHADEQIWEALDKCQLGDEVRKKKGKLDSQGRVLLKKSKVLVLDEA- 1078 (1156)
Q Consensus 1002 -~~~~LR~~i~~VpQdp~LF~-gTIr~Nl~~~~~~~deei~~al~~~~l~~~i~~lp~gl~s~ARALLr~~~ILiLDEa- 1078 (1156)
....+|+.+++++|++.+++ .|+++|+.. +....+... .......-..+.+....|+++++|||
T Consensus 90 ~~~~~~~~~i~~v~Q~~~l~~~~tv~e~i~~-----------~~~~~~~~~--~~~s~~~i~l~i~~~~~p~LlLlDePG 156 (608)
T 3szr_A 90 VNEDKWRGKVSYQDYEIEISDASEVEKEINK-----------AQNAIAGEG--MGISHELITLEISSRDVPDLTLIDLPG 156 (608)
T ss_dssp SSSSCCEEEESCC---CCCCCHHHHHTTHHH-----------HHHHHHCSS--SCCCSCCEEEEEEESSSCCEEEEECCC
T ss_pred CccccceeEEeeecccccCCCHHHHHHHHHH-----------HHHHhcCCc--cccchHHHHHHhcCCCCCceeEeeCCC
Confidence 24568899999999998775 488888742 111111100 00000111124556678999999999
Q ss_pred -----CcCCCHHHHHHHHHHHHHhcC---CceEEEeecCcccc-------------cccCEEEEEeCcEEeeecChhHHh
Q 037346 1079 -----TASVDTATDNQIQQTLRQHFS---DCTVVTIAHRITSV-------------LDSAMVLLLNHGLIKEYDSPTKLL 1137 (1156)
Q Consensus 1079 -----TS~LD~~te~~I~~~l~~~~~---~~TvI~IaHrl~ti-------------~~~D~I~Vl~~G~IvE~G~~~eLl 1137 (1156)
|++||+.+.+.+.+.++++.+ +.++++++|+++.. .....|+|+.++.+++.|++++++
T Consensus 157 i~~~~t~~LD~~~~~~i~~li~~~l~~~~~iil~vvt~~~d~a~~~~l~la~~v~~~g~rtI~VlTK~Dlv~~g~~~~~~ 236 (608)
T 3szr_A 157 ITRVAVGNQPADIGYKIKTLIKKYIQRQETISLVVVPSNVDIATTEALSMAQEVDPEGDRTIGILTKPDLVDKGTEDKVV 236 (608)
T ss_dssp ------CCSSCSHHHHHHHHHHHHTTSSSCCEEEEEESSSCTTTCHHHHHHHHHCSSCCSEEEEEECGGGSSSSSTTCCC
T ss_pred ccccccCCCCHHHHHHHHHHHHHHHhcCCCCceEEEeccchhccHHHHHHHHHHhhcCCceEEEecchhhcCcccHHHHH
Confidence 999999999999999998643 45788899997633 124679999999999999876554
|
| >1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=99.50 E-value=6.5e-16 Score=164.45 Aligned_cols=154 Identities=18% Similarity=0.181 Sum_probs=90.2
Q ss_pred cEEEeeeEEEeCCCCCCCccccceEEeeCCeEEEEEcCCCCChHHHHHHHhCCC-----CCCCcEEEEcCe------EEE
Q 037346 357 AIEIIDGSFSWDFSSPNPTLRNINLKVFHGMRVAVCGTVGSGKSSCLSCILGGV-----PKESGIIRLCGT------KAY 425 (1156)
Q Consensus 357 ~i~~~~~~f~~~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKSTll~~i~g~~-----~~~~G~i~~~g~------~~~ 425 (1156)
.++++|++|.|+ .+++++ |++++|..++|+|++|||||||++.|+|.. .|+.|.+...+. .-+
T Consensus 3 ~l~~~~~~~~~~----~~~l~~--~~~~~~~~v~lvG~~g~GKSTLl~~l~g~~~~~~~~~~~G~~~~~~~~~~~~~~~l 76 (210)
T 1pui_A 3 NLNYQQTHFVMS----APDIRH--LPSDTGIEVAFAGRSNAGKSSALNTLTNQKSLARTSKTPGRTQLINLFEVADGKRL 76 (210)
T ss_dssp --------CEEE----ESSGGG--SSCSCSEEEEEEECTTSSHHHHHTTTCCC-------------CCEEEEEEETTEEE
T ss_pred chhhhhhhheee----cCCHhH--CCCCCCcEEEEECCCCCCHHHHHHHHhCCCccccccCCCccceeeEEEEecCCEEE
Confidence 378999999995 267888 899999999999999999999999999998 788887654221 111
Q ss_pred EecCCcCCC--------ccHHHH-------------------hhcCCCCCHHHHHHHHHHhCCchhhhhCCCCCcccccc
Q 037346 426 VAQSPWIQS--------GKIEEN-------------------ILFGKEMDRERYERVLEACSLKKDLEVLPFGDQTIIGE 478 (1156)
Q Consensus 426 v~Q~~~~~~--------~ti~en-------------------i~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~t~v~~ 478 (1156)
+ ..|-... ...+.. +..+....+++..+.++..++ | .-.++.
T Consensus 77 ~-Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~~~-------~---~~~v~n 145 (210)
T 1pui_A 77 V-DLPGYGYAEVPEEMKRKWQRALGEYLEKRQSLQGLVVLMDIRHPLKDLDQQMIEWAVDSNI-------A---VLVLLT 145 (210)
T ss_dssp E-ECCCCC------CCHHHHHHHHHHHHHHCTTEEEEEEEEETTSCCCHHHHHHHHHHHHTTC-------C---EEEEEE
T ss_pred E-ECcCCcccccCHHHHHHHHHHHHHHHHhhhcccEEEEEEECCCCCchhHHHHHHHHHHcCC-------C---eEEEEe
Confidence 1 1111100 000111 111111111122222221111 1 123466
Q ss_pred CCCCCCHHHHHH-HHHHHhhccCCCeeeeeCCCCCcCHHHHHHHHHHHHh
Q 037346 479 RGINLSGGQKQR-IQIARPLYQDADIFLLDDPFSPVDDHTGAHLFKFCWV 527 (1156)
Q Consensus 479 ~g~~LSgGqkqR-i~lAral~~~~~illlDep~s~lD~~~~~~i~~~~~~ 527 (1156)
+...+|+||||| +..+++++.+|+++++||||||+|......+++.+..
T Consensus 146 K~D~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~Sal~~~~~~~l~~~l~~ 195 (210)
T 1pui_A 146 KADKLASGARKAQLNMVREAVLAFNGDVQVETFSSLKKQGVDKLRQKLDT 195 (210)
T ss_dssp CGGGSCHHHHHHHHHHHHHHHGGGCSCEEEEECBTTTTBSHHHHHHHHHH
T ss_pred cccCCCchhHHHHHHHHHHHHHhcCCCCceEEEeecCCCCHHHHHHHHHH
Confidence 777899999999 8999999999999999999999999999888887644
|
| >2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2} | Back alignment and structure |
|---|
Probab=99.50 E-value=1.8e-14 Score=155.72 Aligned_cols=165 Identities=13% Similarity=0.076 Sum_probs=103.2
Q ss_pred CCccccceE-EeeCCeEEEEEcCCCCChHHHHHHHhCCCCCCCcEEEEcCeEEEEecCCcCCCccHHHHh-hcCCCCCHH
Q 037346 373 NPTLRNINL-KVFHGMRVAVCGTVGSGKSSCLSCILGGVPKESGIIRLCGTKAYVAQSPWIQSGKIEENI-LFGKEMDRE 450 (1156)
Q Consensus 373 ~~~l~~i~l-~i~~g~~~~ivG~~GsGKSTll~~i~g~~~~~~G~i~~~g~~~~v~Q~~~~~~~ti~eni-~~~~~~~~~ 450 (1156)
.+.|+++.. .+++|++++|+||||||||||++.|++...+..|.+ .|+..+.. ...+.+.+ .++.....
T Consensus 9 ~~~Ld~~~~ggi~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~v------~~~~~~~~--~~~~~~~~~~~~~~~~~- 79 (235)
T 2w0m_A 9 ILDFDKLIQGGIPQGFFIALTGEPGTGKTIFSLHFIAKGLRDGDPC------IYVTTEES--RDSIIRQAKQFNWDFEE- 79 (235)
T ss_dssp CHHHHGGGTTSEETTCEEEEECSTTSSHHHHHHHHHHHHHHHTCCE------EEEESSSC--HHHHHHHHHHTTCCCGG-
T ss_pred chHHHHHhcCCCcCCCEEEEEcCCCCCHHHHHHHHHHHHHHCCCeE------EEEEcccC--HHHHHHHHHHhcchHHH-
Confidence 457888887 899999999999999999999999998887665554 34433221 01111111 11111100
Q ss_pred HHHHHHHHhCCchhhhhCCCCC-ccccccCCCCCCHHHHHHHHHHHhhccCCC--eeeeeCCCCCc--CHHHHHHHHHHH
Q 037346 451 RYERVLEACSLKKDLEVLPFGD-QTIIGERGINLSGGQKQRIQIARPLYQDAD--IFLLDDPFSPV--DDHTGAHLFKFC 525 (1156)
Q Consensus 451 ~~~~~~~~~~l~~~~~~~~~g~-~t~v~~~g~~LSgGqkqRi~lAral~~~~~--illlDep~s~l--D~~~~~~i~~~~ 525 (1156)
+.. ..+ ..++...... ...+ ....|.+|.++...+.+...+|+ ++++|||++.+ |+.....+++.+
T Consensus 80 -~~~----~~~-~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~llilDe~~~~~~~d~~~~~~~~~~l 150 (235)
T 2w0m_A 80 -YIE----KKL-IIIDALMKEKEDQWS---LVNLTPEELVNKVIEAKQKLGYGKARLVIDSVSALFLDKPAMARKISYYL 150 (235)
T ss_dssp -GBT----TTE-EEEECCC----CTTB---CSSCCHHHHHHHHHHHHHHHCSSCEEEEEETGGGGSSSCGGGHHHHHHHH
T ss_pred -Hhh----CCE-EEEeccccccCceee---ecCCCHHHHHHHHHHHHHhhCCCceEEEEECchHhhcCCHHHHHHHHHHH
Confidence 000 000 0000000000 0000 12349999999888888888999 99999999888 987777776655
Q ss_pred Hh---cCCCEEEEEccCC--------Cccc-cCCEEEEEeCC
Q 037346 526 WV---SSSKTVIYATHQV--------EFLP-AADLILVIKDG 555 (1156)
Q Consensus 526 ~~---~~~~tvi~vtH~~--------~~~~-~~d~i~~l~~G 555 (1156)
.. ..|.|+|+++|+. ..+. .||+|++|++.
T Consensus 151 ~~~~~~~~~~vi~~~h~~~~~~~~~~~~~~~~~d~vi~l~~~ 192 (235)
T 2w0m_A 151 KRVLNKWNFTIYATSQYAITTSQAFGFGVEHVADGIIRFRRM 192 (235)
T ss_dssp HHHHHHTTEEEEEEEC-----------CHHHHCSEEEEEEEE
T ss_pred HHHHHhCCCeEEEEeccCcccccccccchheeeeEEEEEEEE
Confidence 32 4588999999998 3455 49999999854
|
| >1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11 | Back alignment and structure |
|---|
Probab=99.48 E-value=7.2e-15 Score=168.54 Aligned_cols=166 Identities=16% Similarity=0.132 Sum_probs=111.2
Q ss_pred EEcCCCCceeeCCCCCCHHHHHHHHhhcc--cCCC----ce-EEEcCeeCCCCChHHHhhcCeeeccccccccccchhcc
Q 037346 956 RYAPNLPLVLRGRTGSGKSTLIQTLFRIV--ESTA----GH-ILIDGKDISLIGLHDLRTRLSIIPQDPTMFEGTTRSNL 1028 (1156)
Q Consensus 956 ~Y~~~~~~vL~G~SGsGKSTL~~lL~rl~--~p~~----G~-I~idG~di~~i~~~~LR~~i~~VpQdp~LF~gTIr~Nl 1028 (1156)
.++++.-+.|.|++|||||||++.+++.+ +|++ |+ |+||+.+.. .++++++++|++.++..++.+|+
T Consensus 127 gi~~G~i~~I~G~~GsGKTTL~~~l~~~~~~~~~~Gg~~G~vi~i~~e~~~------~~~~i~~i~q~~~~~~~~v~~ni 200 (349)
T 1pzn_A 127 GIETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTF------RPERIREIAQNRGLDPDEVLKHI 200 (349)
T ss_dssp SEESSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTSCSCEEEEEESSSCC------CHHHHHHHHHTTTCCHHHHGGGE
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHHHhccchhcCCCCCeEEEEeCCCCC------CHHHHHHHHHHcCCCHHHHhhCE
Confidence 34556667888999999999999999998 6666 67 999998752 26778999999999988999999
Q ss_pred CCCCCCCHHHHHHHHHHcCCChHHHhhcCCccccccccccCCCEEEEecCCcCCCHHH-------H-----HHHHHHHHH
Q 037346 1029 DPLEEHADEQIWEALDKCQLGDEVRKKKGKLDSQGRVLLKKSKVLVLDEATASVDTAT-------D-----NQIQQTLRQ 1096 (1156)
Q Consensus 1029 ~~~~~~~deei~~al~~~~l~~~i~~lp~gl~s~ARALLr~~~ILiLDEaTS~LD~~t-------e-----~~I~~~l~~ 1096 (1156)
.+......+...+.++.+ ...+.++.+|. .+|++||+||||+.+|++. + ..+...|.+
T Consensus 201 ~~~~~~~~~~~~~~l~~~--~~~~~~lS~G~--------~~~~llIlDs~ta~ld~~~~~~~~~~~r~~~~~~~l~~L~~ 270 (349)
T 1pzn_A 201 YVARAFNSNHQMLLVQQA--EDKIKELLNTD--------RPVKLLIVDSLTSHFRSEYIGRGALAERQQKLAKHLADLHR 270 (349)
T ss_dssp EEEECCSHHHHHHHHHHH--HHHHHHSSSSS--------SCEEEEEEETSSTTHHHHCCSTTTHHHHHHHHHHHHHHHHH
T ss_pred EEEecCChHHHHHHHHHH--HHHHHHhcccc--------CCCCEEEEeCchHhhhhhhcccccHHHHHHHHHHHHHHHHH
Confidence 765544444444444432 23333332221 6899999999999999863 1 233333444
Q ss_pred hc--CCceEEEeecCcccccc-cCEEEEEeCcEEeeecChhHHh
Q 037346 1097 HF--SDCTVVTIAHRITSVLD-SAMVLLLNHGLIKEYDSPTKLL 1137 (1156)
Q Consensus 1097 ~~--~~~TvI~IaHrl~ti~~-~D~I~Vl~~G~IvE~G~~~eLl 1137 (1156)
+. .++|||+++|....+.. ++.+.+...|++++++++..|.
T Consensus 271 la~~~~~tvii~~h~~~~~~~~~~~~~~~~~G~~l~~~~~~rL~ 314 (349)
T 1pzn_A 271 LANLYDIAVFVTNQVQARPDAFFGDPTRPIGGHILAHSATLRVY 314 (349)
T ss_dssp HHHHTTCEEEEEEECC---------------CCCCCTTCSEEEE
T ss_pred HHHHcCcEEEEEcccccccccccCCccccCCcceEeecCcEEEE
Confidence 32 38999999998765432 3456778889999999887775
|
| >4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A* | Back alignment and structure |
|---|
Probab=99.47 E-value=1.7e-14 Score=155.75 Aligned_cols=150 Identities=17% Similarity=0.223 Sum_probs=100.1
Q ss_pred cCCCCceeeCCCCCCHHHHHHHHhhcccC-------CCceEEEcCeeCCCCChHHHhhcCeeeccccccccccchhccCC
Q 037346 958 APNLPLVLRGRTGSGKSTLIQTLFRIVES-------TAGHILIDGKDISLIGLHDLRTRLSIIPQDPTMFEGTTRSNLDP 1030 (1156)
Q Consensus 958 ~~~~~~vL~G~SGsGKSTL~~lL~rl~~p-------~~G~I~idG~di~~i~~~~LR~~i~~VpQdp~LF~gTIr~Nl~~ 1030 (1156)
++++-++|.||||||||||+++|++.+.+ ..|.|++++.+.. . +++++.++|+..++..|+.+|+.+
T Consensus 23 ~~G~~~~l~G~nGsGKSTll~~l~g~~~~~~~~g~~~~~~i~~~~~~~~--~----~~~i~~~~~~~~~~~~~~~~~~~~ 96 (231)
T 4a74_A 23 ETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTF--R----PERIREIAQNRGLDPDEVLKHIYV 96 (231)
T ss_dssp ESSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSCC--C----HHHHHHHHHHTTSCHHHHHHTEEE
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCEEEEEECCCCC--C----HHHHHHHHHHcCCCHHHHhhcEEE
Confidence 35566789999999999999999997665 4558899987531 1 345777888888887799999976
Q ss_pred CCCCCHHHHHHHHHHcCCChHHHhhcCCcccccccc--ccCCCEEEEecCCcCCCHH-------HH-----HHHHHHHHH
Q 037346 1031 LEEHADEQIWEALDKCQLGDEVRKKKGKLDSQGRVL--LKKSKVLVLDEATASVDTA-------TD-----NQIQQTLRQ 1096 (1156)
Q Consensus 1031 ~~~~~deei~~al~~~~l~~~i~~lp~gl~s~ARAL--Lr~~~ILiLDEaTS~LD~~-------te-----~~I~~~l~~ 1096 (1156)
.......+..+.++.+ .+.+. +++ ..+|++|+|||||+.+|++ .+ ..+.+.|.+
T Consensus 97 ~~~~~~~~~~~~~~~~--~~~~~----------~~~~~~~~~~llilDe~~~~l~~~~~~~~~~~~r~~~~~~~~~~l~~ 164 (231)
T 4a74_A 97 ARAFNSNHQMLLVQQA--EDKIK----------ELLNTDRPVKLLIVDSLTSHFRSEYIGRGALAERQQKLAKHLADLHR 164 (231)
T ss_dssp EECCSHHHHHHHHHHH--HHHHH----------HHTTSSSCEEEEEEETSSHHHHHHSCSTTHHHHHHHHHHHHHHHHHH
T ss_pred EecCChHHHHHHHHHH--HHHHH----------HhcccCCceeEEEECChHHHhccccCCCcchhHHHHHHHHHHHHHHH
Confidence 5554433222222111 11111 111 3589999999999999984 22 134444444
Q ss_pred hc--CCceEEEeecCc----cccc-ccCEEEEEeCc
Q 037346 1097 HF--SDCTVVTIAHRI----TSVL-DSAMVLLLNHG 1125 (1156)
Q Consensus 1097 ~~--~~~TvI~IaHrl----~ti~-~~D~I~Vl~~G 1125 (1156)
.. .++|||+|+|.. ..+. .||++++|++|
T Consensus 165 ~~~~~g~tvi~vtH~~~~~g~~~~~~~d~~l~l~~~ 200 (231)
T 4a74_A 165 LANLYDIAVFVTNQVQANGGHILAHSATLRVYLRKG 200 (231)
T ss_dssp HHHHHTCEEEEEEECC---------CCSEEEEEEEC
T ss_pred HHHHCCCeEEEEeecccCcchhhHhhceEEEEEEec
Confidence 32 389999999944 4465 48999999976
|
| >1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1 | Back alignment and structure |
|---|
Probab=99.47 E-value=1.4e-16 Score=184.73 Aligned_cols=165 Identities=13% Similarity=0.140 Sum_probs=120.7
Q ss_pred CCCceeeCCCCCCHHHHHHHHhhcccCCC----ceEEEc----CeeCCCCChHHHhhcCeeeccccccccccchhccCCC
Q 037346 960 NLPLVLRGRTGSGKSTLIQTLFRIVESTA----GHILID----GKDISLIGLHDLRTRLSIIPQDPTMFEGTTRSNLDPL 1031 (1156)
Q Consensus 960 ~~~~vL~G~SGsGKSTL~~lL~rl~~p~~----G~I~id----G~di~~i~~~~LR~~i~~VpQdp~LF~gTIr~Nl~~~ 1031 (1156)
+...+|.|+||||||||+++|.|+++|++ |+|+++ |.++ .++..++ ++|++++|++.+|.+|+++||.++
T Consensus 170 g~k~~IvG~nGsGKSTLlk~L~gl~~~~~~~e~G~i~i~~~~~~~~~-~~~~~~~-~~I~~~~q~~~~~~~t~~~nl~~~ 247 (365)
T 1lw7_A 170 AKTVAILGGESSGKSVLVNKLAAVFNTTSAWEYGREFVFEKLGGDEQ-AMQYSDY-PQMALGHQRYIDYAVRHSHKIAFI 247 (365)
T ss_dssp CEEEEEECCTTSHHHHHHHHHHHHTTCEEECCTTHHHHHHSSSSCTT-SSCTTTH-HHHHHHHHHHHHHHHHHCSSEEEE
T ss_pred hCeEEEECCCCCCHHHHHHHHHHHhCCCcchhhHHHHHHhhcCCCcc-cCChhHH-HHHHHHHHHHHHHHHhccCCEEEE
Confidence 44568999999999999999999999999 999874 6666 6666777 569999999999999999999765
Q ss_pred CCC-CHHHHHHHHHHcCCChHHHhhcCCccccccccc-cCCCEEEEec---CC------cCCCHHHHHHHHHHHHHhcC-
Q 037346 1032 EEH-ADEQIWEALDKCQLGDEVRKKKGKLDSQGRVLL-KKSKVLVLDE---AT------ASVDTATDNQIQQTLRQHFS- 1099 (1156)
Q Consensus 1032 ~~~-~deei~~al~~~~l~~~i~~lp~gl~s~ARALL-r~~~ILiLDE---aT------S~LD~~te~~I~~~l~~~~~- 1099 (1156)
+.. .+..++..+...+....+ ++++. .+|++++||| |+ +++|......+.+.|.+..+
T Consensus 248 ~~~~~~~~~~~~~~~~~~~~~i----------~~~~~~~~~~lllLdE~~~p~~~~g~~~sld~~~r~~l~~~l~~l~~~ 317 (365)
T 1lw7_A 248 DTDFITTQAFCIQYEGKAHPFL----------DSMIKEYPFDVTILLKNNTEWVDDGLRSLGSQKQRQQFQQLLKKLLDK 317 (365)
T ss_dssp SSCHHHHHHHHHHHHSCCCHHH----------HHHHHHSCCSEEEEEECCCC-----------CCSHHHHHHHHHHHHHG
T ss_pred eCCchHHHHHHHHHcCCCCHHH----------HHHHhhcCCCEEEECCCCCCcccCCCcCCccHHHHHHHHHHHHHHHHH
Confidence 432 244455444433333332 33333 4899999999 54 68999999999999977654
Q ss_pred -CceEEEeecCcccccccCEEEEEeCcEEeeecChhHHhc
Q 037346 1100 -DCTVVTIAHRITSVLDSAMVLLLNHGLIKEYDSPTKLLE 1138 (1156)
Q Consensus 1100 -~~TvI~IaHrl~ti~~~D~I~Vl~~G~IvE~G~~~eLl~ 1138 (1156)
+.|+|+++|--..-.-+|++.++++ +++.|+++||.+
T Consensus 318 ~~~~ililde~~~~~r~~~~i~~i~~--~l~~~~~~~~~~ 355 (365)
T 1lw7_A 318 YKVPYIEIESPSYLDRYNQVKAVIEK--VLNEEEISELQN 355 (365)
T ss_dssp GGCCCEEEECSSHHHHHHHHHHHHHH--HTSCCCCSSCCC
T ss_pred cCCCEEEeCCCCHHHHHHHHHHHHHH--HhcccchhHhhc
Confidence 8899999986333344677777764 677888888864
|
| >2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.46 E-value=1.2e-14 Score=169.23 Aligned_cols=156 Identities=12% Similarity=0.101 Sum_probs=97.2
Q ss_pred ccEEEeeeEEEeCCCCCCCccccceEEeeCCeEEEEEcCCCCChHHHHHHHhCCCCCCCc--EEEEc-------CeEEEE
Q 037346 356 TAIEIIDGSFSWDFSSPNPTLRNINLKVFHGMRVAVCGTVGSGKSSCLSCILGGVPKESG--IIRLC-------GTKAYV 426 (1156)
Q Consensus 356 ~~i~~~~~~f~~~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKSTll~~i~g~~~~~~G--~i~~~-------g~~~~v 426 (1156)
+.|.++|+++.|+ +..+++|++|+| +|+|+||||||||++.|+|...+..| .+.++ ..++|+
T Consensus 10 ~~l~~~~l~~~y~---~~~vl~~vsf~I------~lvG~sGaGKSTLln~L~g~~~~~~~~~~~~~~~~~t~~~~~i~~v 80 (418)
T 2qag_C 10 GYVGFANLPNQVY---RKSVKRGFEFTL------MVVGESGLGKSTLINSLFLTDLYSPEYPGPSHRIKKTVQVEQSKVL 80 (418)
T ss_dssp -----CCCCCCTT---TTTCC-CCCEEE------EEECCTTSSHHHHHHHHTTCCCCCCCCCSCC-----CCEEEEEECC
T ss_pred CcEEEEecceeEC---CEEEecCCCEEE------EEECCCCCcHHHHHHHHhCCCCCCCCCCCcccCCccceeeeeEEEE
Confidence 4589999999996 457999999987 99999999999999999999875443 11111 136888
Q ss_pred ecCCcCC-CccHHHHhhcCCCCCH-HHHHHHHHHhCCchhhhhCCCCCccccccCCCCCCHHHHHHHHHHHhhccCCC--
Q 037346 427 AQSPWIQ-SGKIEENILFGKEMDR-ERYERVLEACSLKKDLEVLPFGDQTIIGERGINLSGGQKQRIQIARPLYQDAD-- 502 (1156)
Q Consensus 427 ~Q~~~~~-~~ti~eni~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~g~~t~v~~~g~~LSgGqkqRi~lAral~~~~~-- 502 (1156)
+|++.++ ..||.||+.++...+. +.+..+.+ .+. ..++++++||++||||++.+|+
T Consensus 81 ~q~~~~~~~Ltv~Dt~g~~~~~~~~~~~~~i~~------~i~--------------~~~~~~l~qr~~IaRal~~d~~~~ 140 (418)
T 2qag_C 81 IKEGGVQLLLTIVDTPGFGDAVDNSNCWQPVID------YID--------------SKFEDYLNAESRVNRRQMPDNRVQ 140 (418)
T ss_dssp ------CEEEEEEECC-----------CHHHHH------HHH--------------HHHHHHTTTSCC-CCCCCCCC-CC
T ss_pred EecCCcccceeeeechhhhhhccchhhHHHHHH------HHH--------------HHHHHHHHHHHHHHHHhccCCCee
Confidence 9987765 5699999998864321 11122211 111 1466778899999999999999
Q ss_pred -eeeeeCCC-CCcCHHHHHHHHHHHHhcCCCEEEEEccCCCcc
Q 037346 503 -IFLLDDPF-SPVDDHTGAHLFKFCWVSSSKTVIYATHQVEFL 543 (1156)
Q Consensus 503 -illlDep~-s~lD~~~~~~i~~~~~~~~~~tvi~vtH~~~~~ 543 (1156)
++++|||| ++||+.... +++.+ ..+.++|+|.|..+.+
T Consensus 141 vlL~ldePt~~~L~~~d~~-~lk~L--~~~v~iIlVinK~Dll 180 (418)
T 2qag_C 141 CCLYFIAPSGHGLKPLDIE-FMKRL--HEKVNIIPLIAKADTL 180 (418)
T ss_dssp EEEEECCC-CCSCCHHHHH-HHHHH--TTTSEEEEEEESTTSS
T ss_pred EEEEEecCcccCCCHHHHH-HHHHH--hccCcEEEEEEcccCc
Confidence 99999999 699988743 33443 2467899998876654
|
| >3kta_B Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xew_Y 1xex_B* | Back alignment and structure |
|---|
Probab=99.46 E-value=9.4e-14 Score=142.00 Aligned_cols=79 Identities=24% Similarity=0.271 Sum_probs=67.3
Q ss_pred CCCCCCHHHHHHHHHHHhhc----cCCCeeeeeCCCCCcCHHHHHHHHHHHHh-cCCCEEEEEccCCCccccCCEEEEE-
Q 037346 479 RGINLSGGQKQRIQIARPLY----QDADIFLLDDPFSPVDDHTGAHLFKFCWV-SSSKTVIYATHQVEFLPAADLILVI- 552 (1156)
Q Consensus 479 ~g~~LSgGqkqRi~lAral~----~~~~illlDep~s~lD~~~~~~i~~~~~~-~~~~tvi~vtH~~~~~~~~d~i~~l- 552 (1156)
....||||||||++|||++. ++|+++||||||++||+.+...+.+.+.. .++.++|+|||+...+..||+++.+
T Consensus 61 ~~~~LSgGekqr~ala~~la~~~~~~~~~llLDEp~a~LD~~~~~~~~~~l~~~~~~~~~ivith~~~~~~~ad~i~~v~ 140 (173)
T 3kta_B 61 RIEAMSGGEKALTALAFVFAIQKFKPAPFYLFDEIDAHLDDANVKRVADLIKESSKESQFIVITLRDVMMANADKIIGVS 140 (173)
T ss_dssp CGGGCCHHHHHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHHHHHTTTSEEEEECSCHHHHTTCSEEEEEE
T ss_pred ccccCCHHHHHHHHHHHHHHhcccCCCCEEEECCCccCCCHHHHHHHHHHHHHhccCCEEEEEEecHHHHHhCCEEEEEE
Confidence 34689999999999999995 56799999999999999999998886644 4567999999998878889999865
Q ss_pred -eCCeE
Q 037346 553 -KDGKI 557 (1156)
Q Consensus 553 -~~G~i 557 (1156)
++|..
T Consensus 141 ~~~g~s 146 (173)
T 3kta_B 141 MRDGVS 146 (173)
T ss_dssp EETTEE
T ss_pred ecCCEE
Confidence 57754
|
| >3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B | Back alignment and structure |
|---|
Probab=99.45 E-value=1.4e-15 Score=186.92 Aligned_cols=174 Identities=19% Similarity=0.255 Sum_probs=105.7
Q ss_pred cEEEeeeEEEeCCCCCCCccccc----------eEEeeCCeEEEEEcCCCCChHHHHHHHhCCCCC-CCcEEEEcCe---
Q 037346 357 AIEIIDGSFSWDFSSPNPTLRNI----------NLKVFHGMRVAVCGTVGSGKSSCLSCILGGVPK-ESGIIRLCGT--- 422 (1156)
Q Consensus 357 ~i~~~~~~f~~~~~~~~~~l~~i----------~l~i~~g~~~~ivG~~GsGKSTll~~i~g~~~~-~~G~i~~~g~--- 422 (1156)
.++++|+++.|+.. .+++|+.+ +++++. ++|+||||||||||+++|+|++.| ++|.|.++|.
T Consensus 10 ~i~~~~l~~~~~~~-~r~ll~~id~l~~~gv~~~l~lp~---iaIvG~nGsGKSTLL~~I~Gl~~P~~sG~vt~~g~~i~ 85 (608)
T 3szr_A 10 SVAENNLCSQYEEK-VRPCIDLIDSLRALGVEQDLALPA---IAVIGDQSSGKSSVLEALSGVALPRGSGIVTRCPLVLK 85 (608)
T ss_dssp ----------CHHH-HHHHHHHHHHHHHHSCCSSCCCCC---EECCCCTTSCHHHHHHHHHSCC-------CCCSCEEEE
T ss_pred hhhhhhhhHHHHHH-HHHHHHHHHHHHhCCCCCcccCCe---EEEECCCCChHHHHHHHHhCCCCCCCCCeEEEcCEEEE
Confidence 47889999999631 13445444 366665 999999999999999999999988 7999887763
Q ss_pred -------------EEEEecCCcCCC-ccHHHHhhcCCCCCHHHHHHHHHHhCCchhhhhCCCCCccccccCCCCCCHHHH
Q 037346 423 -------------KAYVAQSPWIQS-GKIEENILFGKEMDRERYERVLEACSLKKDLEVLPFGDQTIIGERGINLSGGQK 488 (1156)
Q Consensus 423 -------------~~~v~Q~~~~~~-~ti~eni~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~t~v~~~g~~LSgGqk 488 (1156)
++|++|++.+++ .||+|||.+.. ...+. .+..+| +
T Consensus 86 ~~~~~~~~~~~~~i~~v~Q~~~l~~~~tv~e~i~~~~-----------~~~~~-----------------~~~~~s---~ 134 (608)
T 3szr_A 86 LKKLVNEDKWRGKVSYQDYEIEISDASEVEKEINKAQ-----------NAIAG-----------------EGMGIS---H 134 (608)
T ss_dssp EEECSSSSCCEEEESCC---CCCCCHHHHHTTHHHHH-----------HHHHC-----------------SSSCCC---S
T ss_pred EecCCccccceeEEeeecccccCCCHHHHHHHHHHHH-----------HHhcC-----------------Cccccc---h
Confidence 578999987765 49999986421 11100 001111 2
Q ss_pred HHHHHHHhhccCCCeeeeeCC------CCCcCHHHHHHHHHHHHh----cCCCEEEEEccCCCccc-------------c
Q 037346 489 QRIQIARPLYQDADIFLLDDP------FSPVDDHTGAHLFKFCWV----SSSKTVIYATHQVEFLP-------------A 545 (1156)
Q Consensus 489 qRi~lAral~~~~~illlDep------~s~lD~~~~~~i~~~~~~----~~~~tvi~vtH~~~~~~-------------~ 545 (1156)
+++.++.+....|+++++||| |++||+..++.+.+.+.. ..+.+++++||+++... .
T Consensus 135 ~~i~l~i~~~~~p~LlLlDePGi~~~~t~~LD~~~~~~i~~li~~~l~~~~~iil~vvt~~~d~a~~~~l~la~~v~~~g 214 (608)
T 3szr_A 135 ELITLEISSRDVPDLTLIDLPGITRVAVGNQPADIGYKIKTLIKKYIQRQETISLVVVPSNVDIATTEALSMAQEVDPEG 214 (608)
T ss_dssp CCEEEEEEESSSCCEEEEECCC------CCSSCSHHHHHHHHHHHHTTSSSCCEEEEEESSSCTTTCHHHHHHHHHCSSC
T ss_pred HHHHHHhcCCCCCceeEeeCCCccccccCCCCHHHHHHHHHHHHHHHhcCCCCceEEEeccchhccHHHHHHHHHHhhcC
Confidence 334455555678999999999 999999998887765533 23568889999987431 1
Q ss_pred CCEEEEEeCCeEEEccChHH
Q 037346 546 ADLILVIKDGKITQAGKYSD 565 (1156)
Q Consensus 546 ~d~i~~l~~G~i~~~g~~~~ 565 (1156)
...|+|+.++.++..|+.++
T Consensus 215 ~rtI~VlTK~Dlv~~g~~~~ 234 (608)
T 3szr_A 215 DRTIGILTKPDLVDKGTEDK 234 (608)
T ss_dssp CSEEEEEECGGGSSSSSTTC
T ss_pred CceEEEecchhhcCcccHHH
Confidence 35688888888777776543
|
| >1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D* | Back alignment and structure |
|---|
Probab=99.45 E-value=2.4e-14 Score=160.46 Aligned_cols=138 Identities=13% Similarity=0.030 Sum_probs=91.6
Q ss_pred CCeEEEEEcCCCCChHHHHHHHhCCCCCCCcEEEEcCe-------------------EEEEecCCcCCC-ccHHHHhhcC
Q 037346 385 HGMRVAVCGTVGSGKSSCLSCILGGVPKESGIIRLCGT-------------------KAYVAQSPWIQS-GKIEENILFG 444 (1156)
Q Consensus 385 ~g~~~~ivG~~GsGKSTll~~i~g~~~~~~G~i~~~g~-------------------~~~v~Q~~~~~~-~ti~eni~~~ 444 (1156)
+|++++|+||||||||||++.|+|.++|++|+|.+.|. ++|++|++.++. .++++|+.++
T Consensus 101 ~g~vi~lvG~nGsGKTTll~~Lagll~~~~g~V~l~g~D~~r~~a~~ql~~~~~~~~i~~v~q~~~~~p~~~v~~~v~~~ 180 (304)
T 1rj9_A 101 KGRVVLVVGVNGVGKTTTIAKLGRYYQNLGKKVMFCAGDTFRAAGGTQLSEWGKRLSIPVIQGPEGTDSAALAYDAVQAM 180 (304)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEECCCCSSTTTTHHHHHHHHHHTCCEECCCTTCCHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEeecCCChhHHHHHHHHHHhcCceEEEeCCCCCHHHHHHHHHHHH
Confidence 68999999999999999999999999999999998762 578999886654 4788888643
Q ss_pred CCCCHHHHHHHHHHhCCchhhhhCCCCCccccccCCCCCCHHHHHHHHHHHhhccCCC--eeeeeCCCCCcCHHHHHHHH
Q 037346 445 KEMDRERYERVLEACSLKKDLEVLPFGDQTIIGERGINLSGGQKQRIQIARPLYQDAD--IFLLDDPFSPVDDHTGAHLF 522 (1156)
Q Consensus 445 ~~~~~~~~~~~~~~~~l~~~~~~~~~g~~t~v~~~g~~LSgGqkqRi~lAral~~~~~--illlDep~s~lD~~~~~~i~ 522 (1156)
. . + +.+..+-..+...+ .....++..++||++||||+..+|+ ++.|| |+++.|.... +
T Consensus 181 ~------~----~--~~d~~llDt~G~~~----~~~~~~~eLs~~r~~iaRal~~~P~~~lLvLD-a~t~~~~~~~--~- 240 (304)
T 1rj9_A 181 K------A----R--GYDLLFVDTAGRLH----TKHNLMEELKKVKRAIAKADPEEPKEVWLVLD-AVTGQNGLEQ--A- 240 (304)
T ss_dssp H------H----H--TCSEEEECCCCCCT----TCHHHHHHHHHHHHHHHHHCTTCCSEEEEEEE-TTBCTHHHHH--H-
T ss_pred H------h----C--CCCEEEecCCCCCC----chHHHHHHHHHHHHHHHHhhcCCCCeEEEEEc-HHHHHHHHHH--H-
Confidence 1 0 0 11110100111000 1112356677999999999999999 45555 5555443221 1
Q ss_pred HHHHhcCCCEEEEEccCCCc
Q 037346 523 KFCWVSSSKTVIYATHQVEF 542 (1156)
Q Consensus 523 ~~~~~~~~~tvi~vtH~~~~ 542 (1156)
.......+.|+|++||+.+.
T Consensus 241 ~~~~~~~~~t~iivTh~d~~ 260 (304)
T 1rj9_A 241 KKFHEAVGLTGVIVTKLDGT 260 (304)
T ss_dssp HHHHHHHCCSEEEEECTTSS
T ss_pred HHHHHHcCCcEEEEECCccc
Confidence 11112347899999998554
|
| >1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A* | Back alignment and structure |
|---|
Probab=99.45 E-value=4.5e-15 Score=167.14 Aligned_cols=170 Identities=12% Similarity=0.109 Sum_probs=107.8
Q ss_pred EEEEEEEEEcCCCCceeeCCCCCCHHHHHHHHhhcccCCCc-eEEEcCeeCCCCChHHHhhcCeeeccccccccccchhc
Q 037346 949 NIRHLQVRYAPNLPLVLRGRTGSGKSTLIQTLFRIVESTAG-HILIDGKDISLIGLHDLRTRLSIIPQDPTMFEGTTRSN 1027 (1156)
Q Consensus 949 ~~~~Vsf~Y~~~~~~vL~G~SGsGKSTL~~lL~rl~~p~~G-~I~idG~di~~i~~~~LR~~i~~VpQdp~LF~gTIr~N 1027 (1156)
.++++++..++++-++|.||+|||||||++.|++...|.+| .|.+.+.+ .+.+.+++++..+.|+..+ +..+|
T Consensus 24 ~Ld~i~~~l~~G~~~~i~G~~G~GKTTl~~~ia~~~~~~~G~~v~~~~~e---~~~~~~~~r~~~~~~~~~~---~~~~~ 97 (296)
T 1cr0_A 24 GINDKTLGARGGEVIMVTSGSGMGKSTFVRQQALQWGTAMGKKVGLAMLE---ESVEETAEDLIGLHNRVRL---RQSDS 97 (296)
T ss_dssp THHHHHCSBCTTCEEEEEESTTSSHHHHHHHHHHHHHHTSCCCEEEEESS---SCHHHHHHHHHHHHTTCCG---GGCHH
T ss_pred HHHHHhcCCCCCeEEEEEeCCCCCHHHHHHHHHHHHHHHcCCeEEEEeCc---CCHHHHHHHHHHHHcCCCh---hhccc
Confidence 57888888889988889999999999999999999999888 77665443 3566777776666655432 12222
Q ss_pred cCCCCCCCHHHHHHHHHH----cCCChHHHhhcCCcccc-------ccccccCCCEEEEecCCc---C---CCH-HHHHH
Q 037346 1028 LDPLEEHADEQIWEALDK----CQLGDEVRKKKGKLDSQ-------GRVLLKKSKVLVLDEATA---S---VDT-ATDNQ 1089 (1156)
Q Consensus 1028 l~~~~~~~deei~~al~~----~~l~~~i~~lp~gl~s~-------ARALLr~~~ILiLDEaTS---~---LD~-~te~~ 1089 (1156)
+... ..++++..++.+. .++ ++...|..+... |+++..+|++|||||||+ + +|. +....
T Consensus 98 l~~~-~~~~~~~~~~~~~~l~~~~l--~i~~~~~~~~~~~l~~~~~a~~~~~~p~llilDept~~~~~~~~~d~~~~~~~ 174 (296)
T 1cr0_A 98 LKRE-IIENGKFDQWFDELFGNDTF--HLYDSFAEAETDRLLAKLAYMRSGLGCDVIILDHISIVVSASGESDERKMIDN 174 (296)
T ss_dssp HHHH-HHHHTHHHHHHHHHHSSSCE--EEECCCCSCCHHHHHHHHHHHHHTTCCSEEEEEEEC-----------CHHHHH
T ss_pred cccC-CCCHHHHHHHHHHHhccCCE--EEECCCCCCCHHHHHHHHHHHHHhcCCCEEEEcCccccCCCCCCCCHHHHHHH
Confidence 2111 1112223222222 222 122222212111 455888999999999999 4 344 44566
Q ss_pred HHHHHHHhcC--CceEEEeecCc--c--------------------ccc-ccCEEEEEeCcEE
Q 037346 1090 IQQTLRQHFS--DCTVVTIAHRI--T--------------------SVL-DSAMVLLLNHGLI 1127 (1156)
Q Consensus 1090 I~~~l~~~~~--~~TvI~IaHrl--~--------------------ti~-~~D~I~Vl~~G~I 1127 (1156)
+.+.|+++.+ ++|||+++|.. + .+. .||+|++|++|+.
T Consensus 175 i~~~L~~la~~~~~~vi~vsh~~r~~~~~~~~~~~~p~l~dl~~s~~i~~~aD~vi~L~~~~~ 237 (296)
T 1cr0_A 175 LMTKLKGFAKSTGVVLVVICHLKNPDKGKAHEEGRPVSITDLRGSGALRQLSDTIIALERNQQ 237 (296)
T ss_dssp HHHHHHHHHHHHCCEEEEEEECC-----------------CCC---CHHHHCSEEEEEEEC--
T ss_pred HHHHHHHHHHHhCCeEEEEEecCccccccccccCCCCCHHHhcccHHhHhhCcEEEEEecCcc
Confidence 7777776542 89999999995 3 443 6999999999875
|
| >1wb9_A DNA mismatch repair protein MUTS; DNA-binding, ATP-binding, DNA binding, DNA repair, mismatch recognition; HET: DNA ADP; 2.10A {Escherichia coli} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1wbb_A* 1e3m_A* 1oh5_A* 1oh6_A* 1oh7_A* 1oh8_A* 1w7a_A* 2wtu_A* 1wbd_A* 1ng9_A* 3k0s_A* | Back alignment and structure |
|---|
Probab=99.44 E-value=2e-14 Score=180.39 Aligned_cols=148 Identities=11% Similarity=0.024 Sum_probs=96.4
Q ss_pred CCCccccceEEeeCCeEEEEEcCCCCChHHHHHHHhCCCCC-CCcEEEEc---CeEEEEecCCcCC-CccHHHHhhcCCC
Q 037346 372 PNPTLRNINLKVFHGMRVAVCGTVGSGKSSCLSCILGGVPK-ESGIIRLC---GTKAYVAQSPWIQ-SGKIEENILFGKE 446 (1156)
Q Consensus 372 ~~~~l~~i~l~i~~g~~~~ivG~~GsGKSTll~~i~g~~~~-~~G~i~~~---g~~~~v~Q~~~~~-~~ti~eni~~~~~ 446 (1156)
+.++++|++|+ ++|++++|+||||||||||+++|+|...+ ..|.. +. ..+++++| ++ ..++.||+..
T Consensus 594 ~~~vlndisl~-~~g~i~~ItGpNGsGKSTlLr~iagl~~~~q~G~~-vpa~~~~i~~~~~---i~~~~~~~d~l~~--- 665 (800)
T 1wb9_A 594 EPFIANPLNLS-PQRRMLIITGPNMGGKSTYMRQTALIALMAYIGSY-VPAQKVEIGPIDR---IFTRVGAADDLAS--- 665 (800)
T ss_dssp SCCCCEEEEEC-SSSCEEEEECCTTSSHHHHHHHHHHHHHHHTTTCC-BSSSEEEECCCCE---EEEEEC----------
T ss_pred Cceeeeccccc-CCCcEEEEECCCCCChHHHHHHHHHHHHHHhcCcc-cchhcccceeHHH---HHhhCCHHHHHHh---
Confidence 45799999999 99999999999999999999999986421 12210 00 01222222 11 1123333211
Q ss_pred CCHHHHHHHHHHhCCchhhhhCCCCCccccccCCCCCCHHHHHHHHHHHhhccCCCeeeeeCCCCCcCHHHHHHHHHHHH
Q 037346 447 MDRERYERVLEACSLKKDLEVLPFGDQTIIGERGINLSGGQKQRIQIARPLYQDADIFLLDDPFSPVDDHTGAHLFKFCW 526 (1156)
Q Consensus 447 ~~~~~~~~~~~~~~l~~~~~~~~~g~~t~v~~~g~~LSgGqkqRi~lAral~~~~~illlDep~s~lD~~~~~~i~~~~~ 526 (1156)
+..++|+|+++ ++.+.....+|+++|||||++|+|+.....+...++
T Consensus 666 --------------------------------~~stf~~e~~~-~~~il~~a~~psLlLLDEp~~Gtd~~d~~~i~~~ll 712 (800)
T 1wb9_A 666 --------------------------------GRSTFMVEMTE-TANILHNATEYSLVLMDEIGRGTSTYDGLSLAWACA 712 (800)
T ss_dssp ------------------------------------CHHHHHH-HHHHHHHCCTTEEEEEESCCCCSSSSHHHHHHHHHH
T ss_pred --------------------------------hhhhhhHHHHH-HHHHHHhccCCCEEEEECCCCCCChhHHHHHHHHHH
Confidence 11356777765 444445688999999999999988876655432222
Q ss_pred ---hc-CCCEEEEEccCCCccccCCEEEEEeCCeEEEc
Q 037346 527 ---VS-SSKTVIYATHQVEFLPAADLILVIKDGKITQA 560 (1156)
Q Consensus 527 ---~~-~~~tvi~vtH~~~~~~~~d~i~~l~~G~i~~~ 560 (1156)
.. .|.|+|++||+.+....||++..+++|++...
T Consensus 713 ~~l~~~~g~~vl~~TH~~el~~l~d~~~~v~n~~~~~~ 750 (800)
T 1wb9_A 713 ENLANKIKALTLFATHYFELTQLPEKMEGVANVHLDAL 750 (800)
T ss_dssp HHHHHTTCCEEEEECSCGGGGGHHHHSTTEEEEEEEEE
T ss_pred HHHHhccCCeEEEEeCCHHHHHHhhhhhceEEEEEEEE
Confidence 23 58999999999988777888777888887643
|
| >3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A* | Back alignment and structure |
|---|
Probab=99.43 E-value=6.5e-14 Score=157.65 Aligned_cols=139 Identities=12% Similarity=0.179 Sum_probs=95.8
Q ss_pred CceeeCCCCCCHHHHHHHHhhcccCCCceEEEcCeeCCCCChHHHhhcCeeeccccccccccchhccCCCC------CCC
Q 037346 962 PLVLRGRTGSGKSTLIQTLFRIVESTAGHILIDGKDISLIGLHDLRTRLSIIPQDPTMFEGTTRSNLDPLE------EHA 1035 (1156)
Q Consensus 962 ~~vL~G~SGsGKSTL~~lL~rl~~p~~G~I~idG~di~~i~~~~LR~~i~~VpQdp~LF~gTIr~Nl~~~~------~~~ 1035 (1156)
-++|.|+||||||||+++|.|+++|..|. +++++|+||++++..|+++|+.... ...
T Consensus 92 ivgI~G~sGsGKSTL~~~L~gll~~~~G~-----------------~~v~~v~qd~~~~~~t~~e~~~~~~~~g~~~~~d 154 (312)
T 3aez_A 92 IIGVAGSVAVGKSTTARVLQALLARWDHH-----------------PRVDLVTTDGFLYPNAELQRRNLMHRKGFPESYN 154 (312)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHHTSTTC-----------------CCEEEEEGGGGBCCHHHHHHTTCTTCTTSGGGBC
T ss_pred EEEEECCCCchHHHHHHHHHhhccccCCC-----------------CeEEEEecCccCCcccHHHHHHHHHhcCCChHHH
Confidence 35788999999999999999999998664 5699999999999989999986432 122
Q ss_pred HHHHHHHHHHcCCChHHHhhcCCccc-------cccccccCCCEEEEecCCcCCCHHHHHHHHHHHHHhcCCceEEEeec
Q 037346 1036 DEQIWEALDKCQLGDEVRKKKGKLDS-------QGRVLLKKSKVLVLDEATASVDTATDNQIQQTLRQHFSDCTVVTIAH 1108 (1156)
Q Consensus 1036 deei~~al~~~~l~~~i~~lp~gl~s-------~ARALLr~~~ILiLDEaTS~LD~~te~~I~~~l~~~~~~~TvI~IaH 1108 (1156)
.+.+.+.++..+ .+.....+..|+. .|||++.+|+|||||||++.+|+.. ..+.+.+ + .+|.|.|
T Consensus 155 ~~~~~~~L~~l~-~~~~~~~~~~lS~G~~qRv~~a~al~~~p~ilIlDep~~~~d~~~-----~~l~~~~-D-~~I~V~a 226 (312)
T 3aez_A 155 RRALMRFVTSVK-SGSDYACAPVYSHLHYDIIPGAEQVVRHPDILILEGLNVLQTGPT-----LMVSDLF-D-FSLYVDA 226 (312)
T ss_dssp HHHHHHHHHHHH-TTCSCEEEEEEETTTTEEEEEEEEEECSCSEEEEECTTTTCCCSS-----CCGGGGC-S-EEEEEEE
T ss_pred HHHHHHHHHHhC-CCcccCCcccCChhhhhhhhhHHHhccCCCEEEECCccccCCcch-----HHHHHhc-C-cEEEEEC
Confidence 356777777665 2221112222332 2899999999999999999998622 1233333 3 4577777
Q ss_pred Cccccc--ccCEEEEEeCc
Q 037346 1109 RITSVL--DSAMVLLLNHG 1125 (1156)
Q Consensus 1109 rl~ti~--~~D~I~Vl~~G 1125 (1156)
..+... ..+|.+.+.+|
T Consensus 227 ~~~~~~~R~i~R~~~~rd~ 245 (312)
T 3aez_A 227 RIEDIEQWYVSRFLAMRTT 245 (312)
T ss_dssp CHHHHHHHHHHHHHHHTTT
T ss_pred CHHHHHHHHHHHHHHHHhc
Confidence 765532 24454444443
|
| >1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A* | Back alignment and structure |
|---|
Probab=99.43 E-value=1.6e-14 Score=154.23 Aligned_cols=137 Identities=17% Similarity=0.172 Sum_probs=105.7
Q ss_pred cCCCCceeeCCCCCCHHHHHHHHhhcccC--CCceEEEcCeeCCCCChHHHhhcCeeeccccccccc-cc----hhccCC
Q 037346 958 APNLPLVLRGRTGSGKSTLIQTLFRIVES--TAGHILIDGKDISLIGLHDLRTRLSIIPQDPTMFEG-TT----RSNLDP 1030 (1156)
Q Consensus 958 ~~~~~~vL~G~SGsGKSTL~~lL~rl~~p--~~G~I~idG~di~~i~~~~LR~~i~~VpQdp~LF~g-TI----r~Nl~~ 1030 (1156)
++++.++|.||||||||||+++|+|+++| .+|.|.+.+.+.+. ..++.++|++|++.+|.. |+ .+|+.+
T Consensus 14 ~~G~ii~l~GpsGsGKSTLlk~L~g~~~p~~~~g~v~~ttr~~~~----~e~~gi~y~fq~~~~f~~~~~~~~f~E~~~~ 89 (219)
T 1s96_A 14 AQGTLYIVSAPSGAGKSSLIQALLKTQPLYDTQVSVSHTTRQPRP----GEVHGEHYFFVNHDEFKEMISRDAFLEHAEV 89 (219)
T ss_dssp -CCCEEEEECCTTSCHHHHHHHHHHHSCTTTEEECCCEECSCCCT----TCCBTTTBEECCHHHHHHHHHTTCEEEEEEE
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhccCCCCceEEEEEecCCCCCc----ccccCceEEECCHHHHHHHHhcCHHHHHHHH
Confidence 56777889999999999999999999986 78999999987653 246789999999998865 44 677754
Q ss_pred CCCC---CHHHHHHHHHHcCCChHHHhhcCCccccccccccCCCEEEEecCCcCCCHHHHHHHHHHHHHhcCCceEEEee
Q 037346 1031 LEEH---ADEQIWEALDKCQLGDEVRKKKGKLDSQGRVLLKKSKVLVLDEATASVDTATDNQIQQTLRQHFSDCTVVTIA 1107 (1156)
Q Consensus 1031 ~~~~---~deei~~al~~~~l~~~i~~lp~gl~s~ARALLr~~~ILiLDEaTS~LD~~te~~I~~~l~~~~~~~TvI~Ia 1107 (1156)
.... +.+++.+++ .+++++||| ||+++...+.+.+. +++||++++
T Consensus 90 ~~~~yg~~~~~v~~~l------------------------~~G~illLD-----LD~~~~~~i~~~l~---~~~tI~i~t 137 (219)
T 1s96_A 90 FGNYYGTSREAIEQVL------------------------ATGVDVFLD-----IDWQGAQQIRQKMP---HARSIFILP 137 (219)
T ss_dssp TTEEEEEEHHHHHHHH------------------------TTTCEEEEE-----CCHHHHHHHHHHCT---TCEEEEEEC
T ss_pred HhccCCCCHHHHHHHH------------------------hcCCeEEEE-----ECHHHHHHHHHHcc---CCEEEEEEC
Confidence 3221 233344333 346999999 99999999998875 578999999
Q ss_pred cCcccccccCEEEEEeCcEEeeecChhHHhc
Q 037346 1108 HRITSVLDSAMVLLLNHGLIKEYDSPTKLLE 1138 (1156)
Q Consensus 1108 Hrl~ti~~~D~I~Vl~~G~IvE~G~~~eLl~ 1138 (1156)
|+++.+.. |+ +.+| .|+++++.+
T Consensus 138 h~~~~l~~--Rl--~~rG----~~~~e~i~~ 160 (219)
T 1s96_A 138 PSKIELDR--RL--RGRG----QDSEEVIAK 160 (219)
T ss_dssp SSHHHHHH--HH--HTTS----CSCHHHHHH
T ss_pred CCHHHHHH--HH--HHcC----CCCHHHHHH
Confidence 99998876 43 6667 578887764
|
| >1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1 | Back alignment and structure |
|---|
Probab=99.42 E-value=7.2e-16 Score=178.78 Aligned_cols=71 Identities=21% Similarity=0.084 Sum_probs=57.0
Q ss_pred ccccceEEeeC--CeEEEEEcCCCCChHHHHHHHhCCCCCCC----cEEEEc----C-----------eEEEEecCCcCC
Q 037346 375 TLRNINLKVFH--GMRVAVCGTVGSGKSSCLSCILGGVPKES----GIIRLC----G-----------TKAYVAQSPWIQ 433 (1156)
Q Consensus 375 ~l~~i~l~i~~--g~~~~ivG~~GsGKSTll~~i~g~~~~~~----G~i~~~----g-----------~~~~v~Q~~~~~ 433 (1156)
+.+.+++++++ |+.++|+||||||||||+++|+|.++|++ |++.++ | .++|++|++.++
T Consensus 157 ~~~~v~~~v~~~lg~k~~IvG~nGsGKSTLlk~L~gl~~~~~~~e~G~i~i~~~~~~~~~~~~~~~~~~I~~~~q~~~~~ 236 (365)
T 1lw7_A 157 YWKFIPKEARPFFAKTVAILGGESSGKSVLVNKLAAVFNTTSAWEYGREFVFEKLGGDEQAMQYSDYPQMALGHQRYIDY 236 (365)
T ss_dssp GGGGSCTTTGGGTCEEEEEECCTTSHHHHHHHHHHHHTTCEEECCTTHHHHHHSSSSCTTSSCTTTHHHHHHHHHHHHHH
T ss_pred ChhhCCHHHHHhhhCeEEEECCCCCCHHHHHHHHHHHhCCCcchhhHHHHHHhhcCCCcccCChhHHHHHHHHHHHHHHH
Confidence 45679999999 99999999999999999999999999999 887763 2 145566666656
Q ss_pred CccHHHHhhcCC
Q 037346 434 SGKIEENILFGK 445 (1156)
Q Consensus 434 ~~ti~eni~~~~ 445 (1156)
..|++|||.++.
T Consensus 237 ~~t~~~nl~~~~ 248 (365)
T 1lw7_A 237 AVRHSHKIAFID 248 (365)
T ss_dssp HHHHCSSEEEES
T ss_pred HHhccCCEEEEe
Confidence 667777776653
|
| >1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A | Back alignment and structure |
|---|
Probab=99.42 E-value=9.6e-14 Score=154.78 Aligned_cols=144 Identities=14% Similarity=0.157 Sum_probs=94.8
Q ss_pred EeeCCeEEEEEcCCCCChHHHHHHHhCCCCCCCcEEEE------cCeEEEEecCCcCCCccHHHHh-hcCCCCCHHHHHH
Q 037346 382 KVFHGMRVAVCGTVGSGKSSCLSCILGGVPKESGIIRL------CGTKAYVAQSPWIQSGKIEENI-LFGKEMDRERYER 454 (1156)
Q Consensus 382 ~i~~g~~~~ivG~~GsGKSTll~~i~g~~~~~~G~i~~------~g~~~~v~Q~~~~~~~ti~eni-~~~~~~~~~~~~~ 454 (1156)
.+++|++++|+||||||||||++.+++.+. .|.+.. .+.+.|+..+... ..+.+++ .++...+......
T Consensus 26 gl~~G~i~~i~G~~GsGKTtl~~~l~~~~~--~g~~~~g~~~~~~~~v~~~~~e~~~--~~~~~r~~~~g~~~~~~~~~~ 101 (279)
T 1nlf_A 26 NMVAGTVGALVSPGGAGKSMLALQLAAQIA--GGPDLLEVGELPTGPVIYLPAEDPP--TAIHHRLHALGAHLSAEERQA 101 (279)
T ss_dssp TEETTSEEEEEESTTSSHHHHHHHHHHHHH--TCCCTTCCCCCCCCCEEEEESSSCH--HHHHHHHHHHHTTSCHHHHHH
T ss_pred CccCCCEEEEEcCCCCCHHHHHHHHHHHHh--cCCCcCCCccCCCccEEEEECCCCH--HHHHHHHHHHHhhcChhhhhh
Confidence 478999999999999999999999998654 343322 2456777665422 1232222 2344444455555
Q ss_pred HHHHhCCchhhhhCCCCCccccccCCCCCCHHHHHHHHHHHhhccCCCeeeeeCCCC--CcCHHHH---HHHHHHHHh--
Q 037346 455 VLEACSLKKDLEVLPFGDQTIIGERGINLSGGQKQRIQIARPLYQDADIFLLDDPFS--PVDDHTG---AHLFKFCWV-- 527 (1156)
Q Consensus 455 ~~~~~~l~~~~~~~~~g~~t~v~~~g~~LSgGqkqRi~lAral~~~~~illlDep~s--~lD~~~~---~~i~~~~~~-- 527 (1156)
+++.+.+.+. .+.....||+||+|++ ++++.+|+++++|||++ ++|.... ..+++.+..
T Consensus 102 ~~~~l~l~~~-----------~~~~~~~ls~g~~~~i---~~l~~~~~livlDe~~~~~~~d~~~~~~~~~~~~~L~~l~ 167 (279)
T 1nlf_A 102 VADGLLIQPL-----------IGSLPNIMAPEWFDGL---KRAAEGRRLMVLDTLRRFHIEEENASGPMAQVIGRMEAIA 167 (279)
T ss_dssp HHHHEEECCC-----------TTSCCCTTSHHHHHHH---HHHHTTCSEEEEECGGGGCCSCTTCHHHHHHHHHHHHHHH
T ss_pred ccCceEEeec-----------CCCCcccCCHHHHHHH---HHhcCCCCEEEECCHHHhcCCCcCchHHHHHHHHHHHHHH
Confidence 5555544321 2345678999998875 68888999999999999 8997433 445444422
Q ss_pred -cCCCEEEEEccCCCcc
Q 037346 528 -SSSKTVIYATHQVEFL 543 (1156)
Q Consensus 528 -~~~~tvi~vtH~~~~~ 543 (1156)
..|.|+|+++|+....
T Consensus 168 ~~~g~tvi~i~H~~~~~ 184 (279)
T 1nlf_A 168 ADTGCSIVFLHHASKGA 184 (279)
T ss_dssp HHHCCEEEEEEEC----
T ss_pred HHcCCEEEEEecCCCcc
Confidence 4589999999987643
|
| >3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A* | Back alignment and structure |
|---|
Probab=99.41 E-value=6.8e-15 Score=156.89 Aligned_cols=129 Identities=17% Similarity=0.198 Sum_probs=99.1
Q ss_pred CCCceeeCCCCCCHHHHHHHHhhcccCCCceEEEcCeeCCCCChHHHhhcCeeeccccccccc---cchhcc--CCCC--
Q 037346 960 NLPLVLRGRTGSGKSTLIQTLFRIVESTAGHILIDGKDISLIGLHDLRTRLSIIPQDPTMFEG---TTRSNL--DPLE-- 1032 (1156)
Q Consensus 960 ~~~~vL~G~SGsGKSTL~~lL~rl~~p~~G~I~idG~di~~i~~~~LR~~i~~VpQdp~LF~g---TIr~Nl--~~~~-- 1032 (1156)
+..++|.|+||||||||+++|.|++.| ++++|+||+++++. |+++|+ .+..
T Consensus 6 ~~~i~i~G~~GsGKSTl~~~l~~~~~~----------------------~i~~v~~d~~~~~~~~~~~~~~~~~~~~~~~ 63 (211)
T 3asz_A 6 PFVIGIAGGTASGKTTLAQALARTLGE----------------------RVALLPMDHYYKDLGHLPLEERLRVNYDHPD 63 (211)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHHGG----------------------GEEEEEGGGCBCCCTTSCHHHHHHSCTTSGG
T ss_pred cEEEEEECCCCCCHHHHHHHHHHHhCC----------------------CeEEEecCccccCcccccHHHhcCCCCCChh
Confidence 344688999999999999999999875 58999999999854 455553 3221
Q ss_pred CCCHHHHHHHHHHcCCChHHHhhc----CCc-------cccccccccCCCEEEEecCCcC-------CCHHHHHHHHHHH
Q 037346 1033 EHADEQIWEALDKCQLGDEVRKKK----GKL-------DSQGRVLLKKSKVLVLDEATAS-------VDTATDNQIQQTL 1094 (1156)
Q Consensus 1033 ~~~deei~~al~~~~l~~~i~~lp----~gl-------~s~ARALLr~~~ILiLDEaTS~-------LD~~te~~I~~~l 1094 (1156)
....+.+.++++..++.+.+...+ .|- -..||+++.+|+++++||||++ ||+.++..+++.+
T Consensus 64 ~~~~~~~~~~l~~~~~~~~~~~~~~~~s~g~~~~~~~~~~~~~~li~~~~ll~~de~~~~~~d~~i~ld~~~~~~~~r~l 143 (211)
T 3asz_A 64 AFDLALYLEHAQALLRGLPVEMPVYDFRAYTRSPRRTPVRPAPVVILEGILVLYPKELRDLMDLKVFVDADADERFIRRL 143 (211)
T ss_dssp GBCHHHHHHHHHHHHTTCCEEECCEETTTTEECSSCEEECCCSEEEEESTTTTSSHHHHTTCSEEEEEECCHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHcCCCcCCCcccCcccCCCCCeEEeCCCcEEEEeehhhccCHHHHHhcCEEEEEeCCHHHHHHHHH
Confidence 234577889999888877654311 110 0237899999999999999999 9999999999988
Q ss_pred HHhc--CCceEEEeecCc
Q 037346 1095 RQHF--SDCTVVTIAHRI 1110 (1156)
Q Consensus 1095 ~~~~--~~~TvI~IaHrl 1110 (1156)
.+.. +++|++.++|+.
T Consensus 144 ~r~~~~~g~t~~~~~~~~ 161 (211)
T 3asz_A 144 KRDVLERGRSLEGVVAQY 161 (211)
T ss_dssp HHHHHHSCCCHHHHHHHH
T ss_pred HHHHHHhCCCHHHHHHHH
Confidence 7642 588999999984
|
| >2o8b_B DNA mismatch repair protein MSH6; DNA damage response, somatic hypermutat protein-DNA complex, DNA mispair, cancer; HET: DNA ADP; 2.75A {Homo sapiens} PDB: 2o8c_B* 2o8d_B* 2o8e_B* 2o8f_B* | Back alignment and structure |
|---|
Probab=99.41 E-value=4e-14 Score=181.91 Aligned_cols=155 Identities=12% Similarity=0.110 Sum_probs=102.6
Q ss_pred EEEEEEEEEcC-------CCCceeeCCCCCCHHHHHHHHhhcccCCCceEEEcCeeCCCCChHHHhhcCe-eeccccccc
Q 037346 949 NIRHLQVRYAP-------NLPLVLRGRTGSGKSTLIQTLFRIVESTAGHILIDGKDISLIGLHDLRTRLS-IIPQDPTMF 1020 (1156)
Q Consensus 949 ~~~~Vsf~Y~~-------~~~~vL~G~SGsGKSTL~~lL~rl~~p~~G~I~idG~di~~i~~~~LR~~i~-~VpQdp~LF 1020 (1156)
.++|++|.-.+ +.-.+|.|||||||||+++.+ |+..+ +.++| +|||++.
T Consensus 771 v~ndi~l~~~~~~~~~~~g~i~~ItGpNgsGKSTlLr~i-Gl~~~--------------------~aqiG~~Vpq~~~-- 827 (1022)
T 2o8b_B 771 IPNDILIGCEEEEQENGKAYCVLVTGPNMGGKSTLMRQA-GLLAV--------------------MAQMGCYVPAEVC-- 827 (1022)
T ss_dssp CCEEEEESCCCSCC---CCCEEEEECCTTSSHHHHHHHH-HHHHH--------------------HHTTTCCEESSEE--
T ss_pred EeeeeeeccccccccCCCCcEEEEECCCCCChHHHHHHH-HHHHH--------------------HhheeEEeccCcC--
Confidence 45555555443 455678899999999999999 99864 34566 9999984
Q ss_pred cccchhccCCCCCCCHHHHHHHHHHcCCChHHHhhcCCccccccccccCCCEEEEecCCcCCCHHH-HHHHHHHHHHhc-
Q 037346 1021 EGTTRSNLDPLEEHADEQIWEALDKCQLGDEVRKKKGKLDSQGRVLLKKSKVLVLDEATASVDTAT-DNQIQQTLRQHF- 1098 (1156)
Q Consensus 1021 ~gTIr~Nl~~~~~~~deei~~al~~~~l~~~i~~lp~gl~s~ARALLr~~~ILiLDEaTS~LD~~t-e~~I~~~l~~~~- 1098 (1156)
.-|+.+||-..-.. .+.+. .++..|...+.+ -..||+++.+|+++||||||+++|+.. ...+.+.|+.+.
T Consensus 828 ~l~v~d~I~~rig~-~d~~~-----~~~stf~~em~~--~a~al~la~~~sLlLLDEp~~Gtd~~dg~~~~~~il~~L~~ 899 (1022)
T 2o8b_B 828 RLTPIDRVFTRLGA-SDRIM-----SGESTFFVELSE--TASILMHATAHSLVLVDELGRGTATFDGTAIANAVVKELAE 899 (1022)
T ss_dssp EECCCSBEEEECC---------------CHHHHHHHH--HHHHHHHCCTTCEEEEECTTTTSCHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHcCC-HHHHh-----hchhhhHHHHHH--HHHHHHhCCCCcEEEEECCCCCCChHHHHHHHHHHHHHHHh
Confidence 55788887311011 11111 133344333221 133789999999999999999999987 455677777654
Q ss_pred C-CceEEEeecCcccccc-cCEEEEEeCcEEe--eecChhH
Q 037346 1099 S-DCTVVTIAHRITSVLD-SAMVLLLNHGLIK--EYDSPTK 1135 (1156)
Q Consensus 1099 ~-~~TvI~IaHrl~ti~~-~D~I~Vl~~G~Iv--E~G~~~e 1135 (1156)
+ ++|+|++||.++.+.. +|++.|+ +|+++ +.|.+++
T Consensus 900 ~~g~~vl~~TH~~el~~~~~d~~~v~-~g~~~~~~~~~~~~ 939 (1022)
T 2o8b_B 900 TIKCRTLFSTHYHSLVEDYSQNVAVR-LGHMACMVENECED 939 (1022)
T ss_dssp TSCCEEEEECCCHHHHHHTSSCSSEE-EEEEEEC-------
T ss_pred cCCCEEEEEeCCHHHHHHhCCcceee-cCeEEEEEecCccc
Confidence 3 8999999999988764 8898887 58887 5665544
|
| >2o5v_A DNA replication and repair protein RECF; ABC ATPase, walker A motif, P-loop, signature motif, replication/recombination complex; HET: DNA; 1.61A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=99.41 E-value=1e-13 Score=158.44 Aligned_cols=70 Identities=17% Similarity=0.134 Sum_probs=64.4
Q ss_pred ccccc---------cCCCEEEEecCCcCCCHHHHHHHHHHHHHhcCCceEEEeecCcccccccCEEEEEeCcEEeeecCh
Q 037346 1063 GRVLL---------KKSKVLVLDEATASVDTATDNQIQQTLRQHFSDCTVVTIAHRITSVLDSAMVLLLNHGLIKEYDSP 1133 (1156)
Q Consensus 1063 ARALL---------r~~~ILiLDEaTS~LD~~te~~I~~~l~~~~~~~TvI~IaHrl~ti~~~D~I~Vl~~G~IvE~G~~ 1133 (1156)
||+|+ .+|+|||||||||+||+...+.+.+.|.+.. .|+|++|| ++. .||+|++|++|+|++.|+|
T Consensus 277 A~~La~~~l~~~~~~~p~iLLLDEp~s~LD~~~~~~l~~~l~~~~--qt~i~~th-~~~--~~~~i~~l~~G~i~~~g~~ 351 (359)
T 2o5v_A 277 ALRRAELELLREKFGEDPVLLLDDFTAELDPHRRQYLLDLAASVP--QAIVTGTE-LAP--GAALTLRAQAGRFTPVADE 351 (359)
T ss_dssp HHHHHHHHHHHHHHSSCCEEEECCGGGCCCHHHHHHHHHHHHHSS--EEEEEESS-CCT--TCSEEEEEETTEEEECCCT
T ss_pred HHHHHHhhhhhhccCCCCEEEEeCccccCCHHHHHHHHHHHHhcC--cEEEEEEe-ccc--cCCEEEEEECCEEEecCCH
Confidence 78999 8999999999999999999999999998863 89999999 454 8999999999999999999
Q ss_pred hHHh
Q 037346 1134 TKLL 1137 (1156)
Q Consensus 1134 ~eLl 1137 (1156)
+++.
T Consensus 352 ~~~~ 355 (359)
T 2o5v_A 352 EMQA 355 (359)
T ss_dssp TTSC
T ss_pred HHHh
Confidence 9874
|
| >1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6 | Back alignment and structure |
|---|
Probab=99.41 E-value=1.5e-15 Score=169.17 Aligned_cols=120 Identities=16% Similarity=0.124 Sum_probs=89.0
Q ss_pred eCCeEEEEEcCCCCChHHHHHHHhCCCCCCCcEEEEcCeEEEEecCCcCCCccHHHHhhcCC-----------C--CCHH
Q 037346 384 FHGMRVAVCGTVGSGKSSCLSCILGGVPKESGIIRLCGTKAYVAQSPWIQSGKIEENILFGK-----------E--MDRE 450 (1156)
Q Consensus 384 ~~g~~~~ivG~~GsGKSTll~~i~g~~~~~~G~i~~~g~~~~v~Q~~~~~~~ti~eni~~~~-----------~--~~~~ 450 (1156)
+++.+++|+|++|||||||.+.|.+.+++.... ...+.+|+|++++++.++++|+.++. + ++.+
T Consensus 29 ~~~~ii~I~G~sGsGKSTla~~L~~~l~~~g~~---~~~~~iv~~D~f~~~~~~~~~l~~~~~~~~l~~~~g~p~a~d~~ 105 (290)
T 1odf_A 29 KCPLFIFFSGPQGSGKSFTSIQIYNHLMEKYGG---EKSIGYASIDDFYLTHEDQLKLNEQFKNNKLLQGRGLPGTHDMK 105 (290)
T ss_dssp CSCEEEEEECCTTSSHHHHHHHHHHHHHHHHGG---GSCEEEEEGGGGBCCHHHHHHHHHHTTTCGGGSSSCSTTSBCHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhhhcCCC---CceEEEeccccccCChHHHHHHhccccccchhhhccCcchhHHH
Confidence 357899999999999999999999998763101 11345669999999999999997642 1 2333
Q ss_pred HHHHHHHHhCCchhhhhCCCCCcc------ccccCCCCCCHHHHHHHHHH--HhhccCCCeeeeeCCCCCcCHHH
Q 037346 451 RYERVLEACSLKKDLEVLPFGDQT------IIGERGINLSGGQKQRIQIA--RPLYQDADIFLLDDPFSPVDDHT 517 (1156)
Q Consensus 451 ~~~~~~~~~~l~~~~~~~~~g~~t------~v~~~g~~LSgGqkqRi~lA--ral~~~~~illlDep~s~lD~~~ 517 (1156)
.. .+.+..++.|++| .+...+.++||||+||+++| |++ +|+|+|+|||++++|+..
T Consensus 106 ~l---------~~~l~~l~~g~~t~~~~~v~~p~y~~~~sgGq~~R~~~a~~~~~--~~~IlIlEG~~~~ld~~~ 169 (290)
T 1odf_A 106 LL---------QEVLNTIFNNNEHPDQDTVVLPKYDKSQFKGEGDRCPTGQKIKL--PVDIFILEGWFLGFNPIL 169 (290)
T ss_dssp HH---------HHHHHHHTC------CCEEEECCEETTHHHHTCEECSSCEEEES--SCSEEEEEESSTTCCCCC
T ss_pred HH---------HHHHHHhhccCccccCcceeeccCccccCCccccccccccceEc--CCCEEEEeCccccCCccc
Confidence 33 3345555666443 35666789999999999998 666 999999999999999854
|
| >3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A* | Back alignment and structure |
|---|
Probab=99.41 E-value=6.1e-14 Score=160.43 Aligned_cols=119 Identities=18% Similarity=0.185 Sum_probs=87.5
Q ss_pred eeeCCCCCCHHHHHHHHhhcccCC-CceEEEcCeeCCCCChHHHhhcCeeeccccccccccchhccCCCCCCCHHHHHHH
Q 037346 964 VLRGRTGSGKSTLIQTLFRIVEST-AGHILIDGKDISLIGLHDLRTRLSIIPQDPTMFEGTTRSNLDPLEEHADEQIWEA 1042 (1156)
Q Consensus 964 vL~G~SGsGKSTL~~lL~rl~~p~-~G~I~idG~di~~i~~~~LR~~i~~VpQdp~LF~gTIr~Nl~~~~~~~deei~~a 1042 (1156)
++.|||||||||++++|+|+++|+ +|.|...+ |..++. ++...++++|.+.-.. .. +-.+
T Consensus 127 ~I~GptGSGKTTlL~~l~g~~~~~~~~~i~t~e-d~~e~~---~~~~~~~v~q~~~~~~-----~~------~~~~---- 187 (356)
T 3jvv_A 127 LVTGPTGSGKSTTLAAMLDYLNNTKYHHILTIE-DPIEFV---HESKKCLVNQREVHRD-----TL------GFSE---- 187 (356)
T ss_dssp EEECSTTSCHHHHHHHHHHHHHHHCCCEEEEEE-SSCCSC---CCCSSSEEEEEEBTTT-----BS------CHHH----
T ss_pred EEECCCCCCHHHHHHHHHhcccCCCCcEEEEcc-CcHHhh---hhccccceeeeeeccc-----cC------CHHH----
Confidence 455999999999999999999997 56665544 333333 3445677888654221 11 1011
Q ss_pred HHHcCCChHHHhhcCCccccccccccCCCEEEEecCCcCCCHHHHHHHHHHHHHhcCCceEEEeecCcccccccCEEEEE
Q 037346 1043 LDKCQLGDEVRKKKGKLDSQGRVLLKKSKVLVLDEATASVDTATDNQIQQTLRQHFSDCTVVTIAHRITSVLDSAMVLLL 1122 (1156)
Q Consensus 1043 l~~~~l~~~i~~lp~gl~s~ARALLr~~~ILiLDEaTS~LD~~te~~I~~~l~~~~~~~TvI~IaHrl~ti~~~D~I~Vl 1122 (1156)
..||||..+|++|++|||| |.++.+.+.++. ..|+|||+++|+.+.+..+||+++|
T Consensus 188 ------------------~La~aL~~~PdvillDEp~---d~e~~~~~~~~~---~~G~~vl~t~H~~~~~~~~dRli~l 243 (356)
T 3jvv_A 188 ------------------ALRSALREDPDIILVGEMR---DLETIRLALTAA---ETGHLVFGTLHTTSAAKTIDRVVDV 243 (356)
T ss_dssp ------------------HHHHHTTSCCSEEEESCCC---SHHHHHHHHHHH---HTTCEEEEEESCSSHHHHHHHHHHT
T ss_pred ------------------HHHHHhhhCcCEEecCCCC---CHHHHHHHHHHH---hcCCEEEEEEccChHHHHHHHHhhh
Confidence 4489999999999999999 888866655553 3489999999999999889999988
Q ss_pred eCc
Q 037346 1123 NHG 1125 (1156)
Q Consensus 1123 ~~G 1125 (1156)
..|
T Consensus 244 ~~~ 246 (356)
T 3jvv_A 244 FPA 246 (356)
T ss_dssp SCH
T ss_pred cCc
Confidence 544
|
| >2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.39 E-value=1.3e-13 Score=159.65 Aligned_cols=171 Identities=16% Similarity=0.217 Sum_probs=107.9
Q ss_pred cEEEeeeEEEeCCCCCCCccccceEEeeCCeE--EEEEcCCCCChHHHHHHHhCCCCCCCcEE--------EEcCeEEEE
Q 037346 357 AIEIIDGSFSWDFSSPNPTLRNINLKVFHGMR--VAVCGTVGSGKSSCLSCILGGVPKESGII--------RLCGTKAYV 426 (1156)
Q Consensus 357 ~i~~~~~~f~~~~~~~~~~l~~i~l~i~~g~~--~~ivG~~GsGKSTll~~i~g~~~~~~G~i--------~~~g~~~~v 426 (1156)
.+++++ ++.|+ +.+ |+++||++++|++ ++|+||||||||||+++|+|..- .|.- .. ..++|+
T Consensus 16 ~l~~~~-~~~y~---~~~-L~~vsl~i~~Gei~~vaLvG~nGaGKSTLln~L~G~~l--~g~~~~~~~~~~~~-~~i~~v 87 (427)
T 2qag_B 16 TVPLAG-HVGFD---SLP-DQLVNKSVSQGFCFNILCVGETGLGKSTLMDTLFNTKF--EGEPATHTQPGVQL-QSNTYD 87 (427)
T ss_dssp -CCCCC-CC-CC-----C-HHHHHHSCC-CCEEEEEEECSTTSSSHHHHHHHHTSCC---------CCSSCEE-EEEEEE
T ss_pred eEEEee-EEEEC---Cee-cCCCceEecCCCeeEEEEECCCCCCHHHHHHHHhCccc--cCCcCCCCCccceE-eeEEEE
Confidence 355666 77785 345 9999999999999 99999999999999999999851 1211 11 158999
Q ss_pred ecCCcCC-CccHHHHhhcCCCCCHH------------HHHHHHHHh-CCchhhhhCCCCC----ccccccCCCCCCHHHH
Q 037346 427 AQSPWIQ-SGKIEENILFGKEMDRE------------RYERVLEAC-SLKKDLEVLPFGD----QTIIGERGINLSGGQK 488 (1156)
Q Consensus 427 ~Q~~~~~-~~ti~eni~~~~~~~~~------------~~~~~~~~~-~l~~~~~~~~~g~----~t~v~~~g~~LSgGqk 488 (1156)
+|++.++ ..|+.||+.||...+.. ++.+.+... ++...+...++.. --.|-..+..|+-.+
T Consensus 88 ~Q~~~l~~~ltv~D~~~~g~~~~~~~~~~~i~~~i~~q~~~~L~e~~~i~r~l~~~~d~rVh~~v~fI~d~~~~l~~~D- 166 (427)
T 2qag_B 88 LQESNVRLKLTIVSTVGFGDQINKEDSYKPIVEFIDAQFEAYLQEELKIRRVLHTYHDSRIHVCLYFIAPTGHSLKSLD- 166 (427)
T ss_dssp EEC--CEEEEEEEEEECCCC-CCHHHHSHHHHHHHHHHHHHHHHHC--CCCCCCCSCC--CCEEEEEECCCC---CHHH-
T ss_pred eecCccccccchhhhhhhhhccccchhhhHHHHHHHHHHHHHHHHHHhhhhhhcccccccccEEEEEEeCCCCCCCHHH-
Confidence 9998876 56999999999765431 222222222 2211111111111 011233445677666
Q ss_pred HHHHHHHhhccCCCeeeeeCCCCCcCHHHHHHHHHHHHh---cCCCEEEEEcc
Q 037346 489 QRIQIARPLYQDADIFLLDDPFSPVDDHTGAHLFKFCWV---SSSKTVIYATH 538 (1156)
Q Consensus 489 qRi~lAral~~~~~illlDep~s~lD~~~~~~i~~~~~~---~~~~tvi~vtH 538 (1156)
+.++++|..+++|+++|+|+..|.+.....+++.+.. ..|.+++.++.
T Consensus 167 --ieilk~L~~~~~vI~Vi~KtD~Lt~~E~~~l~~~I~~~L~~~gi~I~~is~ 217 (427)
T 2qag_B 167 --LVTMKKLDSKVNIIPIIAKADAISKSELTKFKIKITSELVSNGVQIYQFPT 217 (427)
T ss_dssp --HHHHHHTCSCSEEEEEESCGGGSCHHHHHHHHHHHHHHHBTTBCCCCCCC-
T ss_pred --HHHHHHHhhCCCEEEEEcchhccchHHHHHHHHHHHHHHHHcCCcEEecCC
Confidence 7999999999999999999999998777666665532 45677777664
|
| >2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis} | Back alignment and structure |
|---|
Probab=99.37 E-value=2.2e-16 Score=182.08 Aligned_cols=199 Identities=13% Similarity=0.020 Sum_probs=125.9
Q ss_pred CCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCcc--c-cccCCCCCCCccE---------
Q 037346 291 IPLESGMILSALTTFKILQEPIYYLPESISMMIQAKVPLDRIASFLCLEGLQTD--V-LEKMPRGNSDTAI--------- 358 (1156)
Q Consensus 291 ~~lt~~~~ft~l~~~~~l~~pl~~l~~~~~~~~~a~~s~~Ri~~fl~~~~~~~~--~-~~~~~~~~~~~~i--------- 358 (1156)
+.++.+.+..++.++..+..| .+....+.+..+..+..|++.++ .|+.... . ....+ ....+
T Consensus 63 ~~lt~~~l~~~~~~~~~~~~~--~l~~~~~~~~~~l~~~~Ri~~vl-~p~~~~~~~~~~ir~~---~~~~itl~~l~~~g 136 (361)
T 2gza_A 63 PNLDYEHLISLGTATARFVDQ--DISDSRPVLSAILPMGERIQIVR-PPACEHGTISVTIRKP---SFTRRTLEDYAQQG 136 (361)
T ss_dssp TTCCHHHHHHHHHHHHHHTTC--CCSSSSCEEEEECTTSCEEEEEC-TTTBCTTCCEEEEECC---CCCCCCHHHHHHTT
T ss_pred CCCCHHHHHHHHHHHHHHcCC--ccCCCCCeEEEEcCCCcEEEEEe-cCccCCCCeEEEEEec---CCCCCCHHHHHhcC
Confidence 568888888887776655544 22222222333344567888777 2221111 0 00111 11234
Q ss_pred EEeeeEEE---eCCCCCCCcc---------ccceEEeeCCeEEEEEcCCCCChHHHHHHHhCCCCCCCcEEEEcC-----
Q 037346 359 EIIDGSFS---WDFSSPNPTL---------RNINLKVFHGMRVAVCGTVGSGKSSCLSCILGGVPKESGIIRLCG----- 421 (1156)
Q Consensus 359 ~~~~~~f~---~~~~~~~~~l---------~~i~l~i~~g~~~~ivG~~GsGKSTll~~i~g~~~~~~G~i~~~g----- 421 (1156)
+|+|++|+ |+.. +.++| +++||.+++|+.++|+||||||||||+++|+|+++|++|.|.++|
T Consensus 137 ~f~~v~f~~~~Y~~~-~~~vL~~~~~~~~~~~l~~~i~~G~~i~ivG~sGsGKSTll~~l~~~~~~~~g~I~ie~~~e~~ 215 (361)
T 2gza_A 137 FFKHVRPMSKSLTPF-EQELLALKEAGDYMSFLRRAVQLERVIVVAGETGSGKTTLMKALMQEIPFDQRLITIEDVPELF 215 (361)
T ss_dssp TTSCCCCSCSCCCHH-HHHHHHHHHHTCHHHHHHHHHHTTCCEEEEESSSSCHHHHHHHHHTTSCTTSCEEEEESSSCCC
T ss_pred CcCccccccccccch-hHHHHhhhhhHHHHHHHHHHHhcCCEEEEECCCCCCHHHHHHHHHhcCCCCceEEEECCccccC
Confidence 78899998 7521 22355 999999999999999999999999999999999999999999976
Q ss_pred ------eEEEEe-cCCcC---CCccHHHHhhcCCCCCHHH-HHHHHHHhCCchhhhhCCCCCccccccCCCCCCHHHHHH
Q 037346 422 ------TKAYVA-QSPWI---QSGKIEENILFGKEMDRER-YERVLEACSLKKDLEVLPFGDQTIIGERGINLSGGQKQR 490 (1156)
Q Consensus 422 ------~~~~v~-Q~~~~---~~~ti~eni~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~g~~t~v~~~g~~LSgGqkqR 490 (1156)
.++|++ |++.+ +..|+++||..+.....+. ....++.....+.+..++.|.+|.+++-..+-..+..+|
T Consensus 216 ~~~~~~~v~~v~~q~~~~~~~~~~t~~~~i~~~l~~~pd~~l~~e~r~~~~~~~l~~l~~g~~~~l~t~H~~~~~~~~~R 295 (361)
T 2gza_A 216 LPDHPNHVHLFYPSEAKEEENAPVTAATLLRSCLRMKPTRILLAELRGGEAYDFINVAASGHGGSITSCHAGSCELTFER 295 (361)
T ss_dssp CTTCSSEEEEECC----------CCHHHHHHHHTTSCCSEEEESCCCSTHHHHHHHHHHTTCCSCEEEEECSSHHHHHHH
T ss_pred ccccCCEEEEeecCccccccccccCHHHHHHHHHhcCCCEEEEcCchHHHHHHHHHHHhcCCCeEEEEECCCCHHHHHHH
Confidence 368999 88775 6779999998764321100 000000011123455667888888888777778899999
Q ss_pred HHHHHh
Q 037346 491 IQIARP 496 (1156)
Q Consensus 491 i~lAra 496 (1156)
+.....
T Consensus 296 l~~l~~ 301 (361)
T 2gza_A 296 LALMVL 301 (361)
T ss_dssp HHHHHT
T ss_pred HHHHHh
Confidence 987764
|
| >1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=99.35 E-value=1.9e-15 Score=159.46 Aligned_cols=147 Identities=19% Similarity=0.212 Sum_probs=97.7
Q ss_pred eCCeEEEEEcCCCCChHHHHHHHhCCCC-------------CCCcEEEEcCe-EE---------EEecCCcCCCccHHHH
Q 037346 384 FHGMRVAVCGTVGSGKSSCLSCILGGVP-------------KESGIIRLCGT-KA---------YVAQSPWIQSGKIEEN 440 (1156)
Q Consensus 384 ~~g~~~~ivG~~GsGKSTll~~i~g~~~-------------~~~G~i~~~g~-~~---------~v~Q~~~~~~~ti~en 440 (1156)
++|++++|+||||||||||+++|+|+++ |..|+ ++|. .. .++|+++++++++.+|
T Consensus 2 ~~g~~i~lvGpsGaGKSTLl~~L~~~~~~~~~~~v~~ttr~~~~g~--~~g~~~~~~~~~~~~~~i~~~~~l~~~~~~~n 79 (198)
T 1lvg_A 2 AGPRPVVLSGPSGAGKSTLLKKLFQEHSSIFGFSVSHTTRNPRPGE--EDGKDYYFVTREMMQRDIAAGDFIEHAEFSGN 79 (198)
T ss_dssp ---CCEEEECCTTSSHHHHHHHHHHHHTTTEEECCCEECSCCCTTC--CBTTTBEECCHHHHHHHHHHTCEEEEEEETTE
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhhCchhceeeeeeeccCCCCcc--cCCceEEEccHHHHHHHHHcCCCEeeeeecCc
Confidence 5899999999999999999999999886 67776 3553 11 1256777888889999
Q ss_pred hhcCCCCCHHHHHHHHHHhCCchhhhhCCCCCccccccCCCCCCHHHHHHHHHHH-hhccCCCeeeeeCCCCCcCHHHHH
Q 037346 441 ILFGKEMDRERYERVLEACSLKKDLEVLPFGDQTIIGERGINLSGGQKQRIQIAR-PLYQDADIFLLDDPFSPVDDHTGA 519 (1156)
Q Consensus 441 i~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~t~v~~~g~~LSgGqkqRi~lAr-al~~~~~illlDep~s~lD~~~~~ 519 (1156)
+ +|. ..+.++++++..... .++..+.|.++.... ++ .|| +++.+|++++|||+|+++|.++++
T Consensus 80 ~-~g~--~~~~i~~~~~~~~~~-~~~~~~~g~~~~~~~-----------~~-~~~~~~l~~p~~~ilde~~~~~d~~~e~ 143 (198)
T 1lvg_A 80 L-YGT--SKEAVRAVQAMNRIC-VLDVDLQGVRSIKKT-----------DL-CPIYIFVQPPSLDVLEQRLRLRNTETEE 143 (198)
T ss_dssp E-EEE--EHHHHHHHHHTTCEE-EEECCHHHHHHHTTS-----------SC-CCEEEEEECSCHHHHHHHHHHHTCSCHH
T ss_pred c-CCC--CHHHHHHHHHcCCcE-EEECCHHHHHHHHhc-----------CC-CcEEEEEeCCCHHHHHHHHHhcCCCCHH
Confidence 8 664 455666666542111 111122333333211 12 567 889999999999999999999888
Q ss_pred HHHHHHHh-cCCCEEEEEccCCCccccCCEEEEEeC
Q 037346 520 HLFKFCWV-SSSKTVIYATHQVEFLPAADLILVIKD 554 (1156)
Q Consensus 520 ~i~~~~~~-~~~~tvi~vtH~~~~~~~~d~i~~l~~ 554 (1156)
.|.+.+.. .++ +.++| +. ..+|+|+++++
T Consensus 144 ~i~~~l~~~~~~---~~~a~--~~-~~~D~iivnd~ 173 (198)
T 1lvg_A 144 SLAKRLAAARTD---MESSK--EP-GLFDLVIINDD 173 (198)
T ss_dssp HHHHHHHHHHHH---TTGGG--ST-TTCSEEEECSS
T ss_pred HHHHHHHHHHHH---HHHhh--cc-CCceEEEECCC
Confidence 88765533 122 24466 22 67999988874
|
| >1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A* | Back alignment and structure |
|---|
Probab=99.35 E-value=4.4e-14 Score=150.85 Aligned_cols=134 Identities=13% Similarity=0.065 Sum_probs=90.3
Q ss_pred EEeeCCeEEEEEcCCCCChHHHHHHHhCCCCC--CCcEEEEcCe---------EEEEecCCcCCCc-cH----HHHhhcC
Q 037346 381 LKVFHGMRVAVCGTVGSGKSSCLSCILGGVPK--ESGIIRLCGT---------KAYVAQSPWIQSG-KI----EENILFG 444 (1156)
Q Consensus 381 l~i~~g~~~~ivG~~GsGKSTll~~i~g~~~~--~~G~i~~~g~---------~~~v~Q~~~~~~~-ti----~eni~~~ 444 (1156)
-..++|++++|+||||||||||+++|+|.++| ..|.|.+.++ ++|++|++..|.. ++ .||+.+.
T Consensus 11 ~~~~~G~ii~l~GpsGsGKSTLlk~L~g~~~p~~~~g~v~~ttr~~~~~e~~gi~y~fq~~~~f~~~~~~~~f~E~~~~~ 90 (219)
T 1s96_A 11 HHMAQGTLYIVSAPSGAGKSSLIQALLKTQPLYDTQVSVSHTTRQPRPGEVHGEHYFFVNHDEFKEMISRDAFLEHAEVF 90 (219)
T ss_dssp ----CCCEEEEECCTTSCHHHHHHHHHHHSCTTTEEECCCEECSCCCTTCCBTTTBEECCHHHHHHHHHTTCEEEEEEET
T ss_pred ccCCCCcEEEEECCCCCCHHHHHHHHhccCCCCceEEEEEecCCCCCcccccCceEEECCHHHHHHHHhcCHHHHHHHHH
Confidence 35789999999999999999999999999986 6788877652 4677777655432 33 3443321
Q ss_pred CCCCHHHHHHHHHHhCCchhhhhCCCCCccccccCCCCCCHHHHHHHHHHHhhccCCCeeeeeCCCCCcCHHHHHHHHHH
Q 037346 445 KEMDRERYERVLEACSLKKDLEVLPFGDQTIIGERGINLSGGQKQRIQIARPLYQDADIFLLDDPFSPVDDHTGAHLFKF 524 (1156)
Q Consensus 445 ~~~~~~~~~~~~~~~~l~~~~~~~~~g~~t~v~~~g~~LSgGqkqRi~lAral~~~~~illlDep~s~lD~~~~~~i~~~ 524 (1156)
.. +.|-.+++ ++.++..++++||| ||+.....+.+.
T Consensus 91 ~~------------------------------------~yg~~~~~---v~~~l~~G~illLD-----LD~~~~~~i~~~ 126 (219)
T 1s96_A 91 GN------------------------------------YYGTSREA---IEQVLATGVDVFLD-----IDWQGAQQIRQK 126 (219)
T ss_dssp TE------------------------------------EEEEEHHH---HHHHHTTTCEEEEE-----CCHHHHHHHHHH
T ss_pred hc------------------------------------cCCCCHHH---HHHHHhcCCeEEEE-----ECHHHHHHHHHH
Confidence 10 00101121 23344557999999 999999988775
Q ss_pred HHhcCCCEEEEEccCCCccccCCEEEEEeCCeEEEccChHHHHh
Q 037346 525 CWVSSSKTVIYATHQVEFLPAADLILVIKDGKITQAGKYSDILN 568 (1156)
Q Consensus 525 ~~~~~~~tvi~vtH~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~ 568 (1156)
+. ++.||+++||+++.+.. |+ +++| .++.+++..
T Consensus 127 l~--~~~tI~i~th~~~~l~~--Rl--~~rG----~~~~e~i~~ 160 (219)
T 1s96_A 127 MP--HARSIFILPPSKIELDR--RL--RGRG----QDSEEVIAK 160 (219)
T ss_dssp CT--TCEEEEEECSSHHHHHH--HH--HTTS----CSCHHHHHH
T ss_pred cc--CCEEEEEECCCHHHHHH--HH--HHcC----CCCHHHHHH
Confidence 43 57899999999987754 32 5666 467776653
|
| >2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=99.35 E-value=8.4e-14 Score=142.43 Aligned_cols=93 Identities=17% Similarity=0.135 Sum_probs=71.4
Q ss_pred ceeeCCCCCCHHHHHHHHhhcccCC---CceEEEcCeeCCCCC---hHHHh-hcCe----eeccccccccccchhccCCC
Q 037346 963 LVLRGRTGSGKSTLIQTLFRIVEST---AGHILIDGKDISLIG---LHDLR-TRLS----IIPQDPTMFEGTTRSNLDPL 1031 (1156)
Q Consensus 963 ~vL~G~SGsGKSTL~~lL~rl~~p~---~G~I~idG~di~~i~---~~~LR-~~i~----~VpQdp~LF~gTIr~Nl~~~ 1031 (1156)
++|.|+||||||||+++|.|+|+|+ .|.|.+||.++.+++ .+.+| ++++ +++|++.+| +++
T Consensus 5 v~IvG~SGsGKSTL~~~L~~~~~~~g~~~G~I~~dg~~i~~~~~~~~d~~r~~~ig~~~~~~~~~~~~~---i~~----- 76 (171)
T 2f1r_A 5 LSIVGTSDSGKTTLITRMMPILRERGLRVAVVKRHAHGDFEIDKEGKDSWKIYNSGADVVIASPVKLAF---IRR----- 76 (171)
T ss_dssp EEEEESCHHHHHHHHHHHHHHHHHTTCCEEEEEC------------CHHHHHHHHTCEEEEECSSEEEE---EEE-----
T ss_pred EEEECCCCCCHHHHHHHHHHHhhhcCCceEEEEEcCcccccCCccchhHHHHHhcCCceEEECCCcEEE---Eec-----
Confidence 5788999999999999999999998 899999999998887 78899 5799 899999988 443
Q ss_pred CCCCHHHHHHHHHHcCCChHHHh-hcCCcccc---------------ccccccCCCE
Q 037346 1032 EEHADEQIWEALDKCQLGDEVRK-KKGKLDSQ---------------GRVLLKKSKV 1072 (1156)
Q Consensus 1032 ~~~~deei~~al~~~~l~~~i~~-lp~gl~s~---------------ARALLr~~~I 1072 (1156)
.++++ .+++++++.. +| |+|+. |||++++|+|
T Consensus 77 ---~~~~~-----~a~l~~~i~~~l~-g~dt~i~EglSgGq~qri~lARall~~p~i 124 (171)
T 2f1r_A 77 ---VSEEE-----GNDLDWIYERYLS-DYDLVITEGFSKAGKDRIVVVKKPEEVEHF 124 (171)
T ss_dssp ---CCHHH-----HTCHHHHHHHHTT-TCSEEEEESCGGGCCCEEEECSSGGGGGGG
T ss_pred ---CChhh-----hhCHHHHHHhhCC-CCCEEEECCcCCCCCcEEEEEecccCCCcc
Confidence 11222 7899999998 88 88864 8999999877
|
| >2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis} | Back alignment and structure |
|---|
Probab=99.32 E-value=8.7e-14 Score=160.38 Aligned_cols=125 Identities=20% Similarity=0.170 Sum_probs=89.7
Q ss_pred CCCCceeeCCCCCCHHHHHHHHhhcccCCCceEEEcCeeCCCCChHHHhhcCeeec-ccccc---ccccchhccCCCCCC
Q 037346 959 PNLPLVLRGRTGSGKSTLIQTLFRIVESTAGHILIDGKDISLIGLHDLRTRLSIIP-QDPTM---FEGTTRSNLDPLEEH 1034 (1156)
Q Consensus 959 ~~~~~vL~G~SGsGKSTL~~lL~rl~~p~~G~I~idG~di~~i~~~~LR~~i~~Vp-Qdp~L---F~gTIr~Nl~~~~~~ 1034 (1156)
+++.++|.|+||||||||+++|+|+++|++|.|.++|. .++.+..+|+.+++++ |++.+ +..|+++||
T Consensus 174 ~G~~i~ivG~sGsGKSTll~~l~~~~~~~~g~I~ie~~--~e~~~~~~~~~v~~v~~q~~~~~~~~~~t~~~~i------ 245 (361)
T 2gza_A 174 LERVIVVAGETGSGKTTLMKALMQEIPFDQRLITIEDV--PELFLPDHPNHVHLFYPSEAKEEENAPVTAATLL------ 245 (361)
T ss_dssp TTCCEEEEESSSSCHHHHHHHHHTTSCTTSCEEEEESS--SCCCCTTCSSEEEEECC----------CCHHHHH------
T ss_pred cCCEEEEECCCCCCHHHHHHHHHhcCCCCceEEEECCc--cccCccccCCEEEEeecCccccccccccCHHHHH------
Confidence 45566788999999999999999999999999999985 4666666889999999 88765 455555553
Q ss_pred CHHHHHHHHHHcCCChHHHhhcCCccccccccccCCCEEEEecCCcCCCHHHHHHHHHHHHHhcC-CceEEEeecCcccc
Q 037346 1035 ADEQIWEALDKCQLGDEVRKKKGKLDSQGRVLLKKSKVLVLDEATASVDTATDNQIQQTLRQHFS-DCTVVTIAHRITSV 1113 (1156)
Q Consensus 1035 ~deei~~al~~~~l~~~i~~lp~gl~s~ARALLr~~~ILiLDEaTS~LD~~te~~I~~~l~~~~~-~~TvI~IaHrl~ti 1113 (1156)
++++..+|+.+++||++. .+.. +.|+.+-. ..|++...|..+..
T Consensus 246 ----------------------------~~~l~~~pd~~l~~e~r~---~~~~----~~l~~l~~g~~~~l~t~H~~~~~ 290 (361)
T 2gza_A 246 ----------------------------RSCLRMKPTRILLAELRG---GEAY----DFINVAASGHGGSITSCHAGSCE 290 (361)
T ss_dssp ----------------------------HHHTTSCCSEEEESCCCS---THHH----HHHHHHHTTCCSCEEEEECSSHH
T ss_pred ----------------------------HHHHhcCCCEEEEcCchH---HHHH----HHHHHHhcCCCeEEEEECCCCHH
Confidence 234445789999999985 3333 34443333 45789999998877
Q ss_pred cccCEEEEEeCcE
Q 037346 1114 LDSAMVLLLNHGL 1126 (1156)
Q Consensus 1114 ~~~D~I~Vl~~G~ 1126 (1156)
..+||+..|..|.
T Consensus 291 ~~~~Rl~~l~~~~ 303 (361)
T 2gza_A 291 LTFERLALMVLQN 303 (361)
T ss_dssp HHHHHHHHHHTTS
T ss_pred HHHHHHHHHHhcc
Confidence 7788888887764
|
| >3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A* | Back alignment and structure |
|---|
Probab=99.31 E-value=2.7e-13 Score=171.94 Aligned_cols=151 Identities=11% Similarity=0.052 Sum_probs=100.3
Q ss_pred CeEEEEEEEEEEcCCCCceeeCCCCCCHHHHHHHH--------hhcccCCCceEEEcCeeCCCCChHHHhhcCeeecccc
Q 037346 946 GEVNIRHLQVRYAPNLPLVLRGRTGSGKSTLIQTL--------FRIVESTAGHILIDGKDISLIGLHDLRTRLSIIPQDP 1017 (1156)
Q Consensus 946 g~I~~~~Vsf~Y~~~~~~vL~G~SGsGKSTL~~lL--------~rl~~p~~G~I~idG~di~~i~~~~LR~~i~~VpQdp 1017 (1156)
+....+|++|.-.+++-.+|.|||||||||+++++ .|.+-|.++.. ++++.
T Consensus 648 ~~~v~ndisl~~~~g~i~~ItGpNGsGKSTlLr~ial~~~~aq~G~~vpa~~~~------------------~~~~d--- 706 (934)
T 3thx_A 648 IAFIPNDVYFEKDKQMFHIITGPNMGGKSTYIRQTGVIVLMAQIGCFVPCESAE------------------VSIVD--- 706 (934)
T ss_dssp CCCCCEEEEEETTTBCEEEEECCTTSSHHHHHHHHHHHHHHHHHTCCBSEEEEE------------------EECCS---
T ss_pred ceeecccceeecCCCeEEEEECCCCCCHHHHHHHHHHHHHHHhcCCcccccccc------------------chHHH---
Confidence 34567899999887777889999999999999999 45444443321 00000
Q ss_pred ccccc-cchhccCCCCCCCHHHHHHHHHHcCCChHHHhhcCCcccccccc--ccCCCEEEEecCCcCCCHHHHHHH-HHH
Q 037346 1018 TMFEG-TTRSNLDPLEEHADEQIWEALDKCQLGDEVRKKKGKLDSQGRVL--LKKSKVLVLDEATASVDTATDNQI-QQT 1093 (1156)
Q Consensus 1018 ~LF~g-TIr~Nl~~~~~~~deei~~al~~~~l~~~i~~lp~gl~s~ARAL--Lr~~~ILiLDEaTS~LD~~te~~I-~~~ 1093 (1156)
.+|.. ...+++. .++..+- .+....|+++ +.+|+++||||||+++|+.....| ...
T Consensus 707 ~i~~~ig~~d~l~----------------~~lStf~----~e~~~~a~il~~a~~~sLlLLDEp~~GlD~~~~~~i~~~i 766 (934)
T 3thx_A 707 CILARVGAGDSQL----------------KGVSTFM----AEMLETASILRSATKDSLIIIDELGRGTSTYDGFGLAWAI 766 (934)
T ss_dssp EEEEECC-------------------------CHHH----HHHHHHHHHHHHCCTTCEEEEESCSCSSCHHHHHHHHHHH
T ss_pred HHHHhcCchhhHH----------------HhHhhhH----HHHHHHHHHHHhccCCcEEEEeCCCCCCCHHHHHHHHHHH
Confidence 01110 0111110 0111111 0111225666 789999999999999999887776 444
Q ss_pred HHHhc--CCceEEEeecCcccccccCEEEEEeCcEEeeecChhHHh
Q 037346 1094 LRQHF--SDCTVVTIAHRITSVLDSAMVLLLNHGLIKEYDSPTKLL 1137 (1156)
Q Consensus 1094 l~~~~--~~~TvI~IaHrl~ti~~~D~I~Vl~~G~IvE~G~~~eLl 1137 (1156)
++.+. .++|+|++||..+...-||++..+.+|++...++++++.
T Consensus 767 l~~l~~~~g~~vl~aTH~~el~~lad~~~~v~ng~v~~~~~~~~l~ 812 (934)
T 3thx_A 767 SEYIATKIGAFCMFATHFHELTALANQIPTVNNLHVTALTTEETLT 812 (934)
T ss_dssp HHHHHHTTCCEEEEEESCGGGGGGGGTCTTEEEEEEEEEEETTEEE
T ss_pred HHHHHhcCCCEEEEEcCcHHHHHHhcccceeEeeEEEEEecCCcEE
Confidence 55443 389999999999988899999999999999888777653
|
| >1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25 | Back alignment and structure |
|---|
Probab=99.31 E-value=3e-13 Score=141.56 Aligned_cols=125 Identities=15% Similarity=0.014 Sum_probs=81.5
Q ss_pred EeeCCeEEEEEcCCCCChHHHHHHHhCCCCCCCcEEEEcCe-----------EEEEecCCcCCCccHHHHhhcCCCCCHH
Q 037346 382 KVFHGMRVAVCGTVGSGKSSCLSCILGGVPKESGIIRLCGT-----------KAYVAQSPWIQSGKIEENILFGKEMDRE 450 (1156)
Q Consensus 382 ~i~~g~~~~ivG~~GsGKSTll~~i~g~~~~~~G~i~~~g~-----------~~~v~Q~~~~~~~ti~eni~~~~~~~~~ 450 (1156)
.+++|++++|+||||||||||++.|+|. +..|.|.++|. ++|++|++. .+.++.+|+.+..
T Consensus 5 ~i~~g~~i~l~G~~GsGKSTl~~~La~~--~~~g~i~i~~d~~~~~~~~~~~~~~~~~~~~-~~~~v~~~l~~~~----- 76 (191)
T 1zp6_A 5 DDLGGNILLLSGHPGSGKSTIAEALANL--PGVPKVHFHSDDLWGYIKHGRIDPWLPQSHQ-QNRMIMQIAADVA----- 76 (191)
T ss_dssp -CCTTEEEEEEECTTSCHHHHHHHHHTC--SSSCEEEECTTHHHHTCCSSCCCTTSSSHHH-HHHHHHHHHHHHH-----
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHhc--cCCCeEEEcccchhhhhhcccccCCccchhh-hhHHHHHHHHHHH-----
Confidence 5789999999999999999999999998 67899999863 245555443 3457777775421
Q ss_pred HHHHHHHHhCCchhhhhCC--CCCccc--cccCCCCCCHHHHHHHHHHHhhccCCCeeeeeCCCCCcCHHHHHHHHHHH
Q 037346 451 RYERVLEACSLKKDLEVLP--FGDQTI--IGERGINLSGGQKQRIQIARPLYQDADIFLLDDPFSPVDDHTGAHLFKFC 525 (1156)
Q Consensus 451 ~~~~~~~~~~l~~~~~~~~--~g~~t~--v~~~g~~LSgGqkqRi~lAral~~~~~illlDep~s~lD~~~~~~i~~~~ 525 (1156)
......+....++... .+.+.. .+.....+|+||+||+++||++.++|+++ +|+...+.+++.+
T Consensus 77 ---~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ls~~~~~~v~~~R~~~r~~~~l--------ld~~~~~~~~~~~ 144 (191)
T 1zp6_A 77 ---GRYAKEGYFVILDGVVRPDWLPAFTALARPLHYIVLRTTAAEAIERCLDRGGDSL--------SDPLVVADLHSQF 144 (191)
T ss_dssp ---HHHHHTSCEEEECSCCCTTTTHHHHTTCSCEEEEEEECCHHHHHHHHHTTCTTSC--------CCHHHHHHHHHHT
T ss_pred ---HHHhccCCeEEEeccCcHHHHHHHHhcCCCeEEEEecCCHHHHHHHHHhcCCCcc--------CCHHHHHHHHHHH
Confidence 1111111111111100 011100 13344679999999999999999999876 5777766666543
|
| >4ad8_A DNA repair protein RECN; DNA binding protein, ATPase domain; HET: DNA; 4.00A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=99.31 E-value=7.9e-13 Score=160.21 Aligned_cols=77 Identities=14% Similarity=0.156 Sum_probs=68.1
Q ss_pred CCCC-CHHHHHHHHHHHhhccCC--CeeeeeCCCCCcCHHHHHHHHHHHHh-cCCCEEEEEccCCCccccCCEEEEEeCC
Q 037346 480 GINL-SGGQKQRIQIARPLYQDA--DIFLLDDPFSPVDDHTGAHLFKFCWV-SSSKTVIYATHQVEFLPAADLILVIKDG 555 (1156)
Q Consensus 480 g~~L-SgGqkqRi~lAral~~~~--~illlDep~s~lD~~~~~~i~~~~~~-~~~~tvi~vtH~~~~~~~~d~i~~l~~G 555 (1156)
..+| ||||||||+||||++.+| ++|||||||++||+.+...+.+.+.. .+|+|||+|||+++.+..||++++|++|
T Consensus 394 ~~~l~SgG~~qrv~la~~l~~~~~~~~lilDEp~~gld~~~~~~i~~~l~~~~~~~~vi~itH~~~~~~~~d~~~~~~~~ 473 (517)
T 4ad8_A 394 LSDVASGGELSRVMLAVSTVLGADTPSVVFDEVDAGIGGAAAIAVAEQLSRLADTRQVLVVTHLAQIAARAHHHYKVEKQ 473 (517)
T ss_dssp SSSSSCSSHHHHHHHHHHHHHCCCSSEEEECSCSSSCCTHHHHHHHHHHHHHHHHSEEEEECCCHHHHHHSSEEEEEECC
T ss_pred HHhcCCHHHHHHHHHHHHHHhCCCCCEEEEeCCcCCCCHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHhCCEEEEEecc
Confidence 3567 999999999999999999 99999999999999999988876643 2389999999999988889999999665
Q ss_pred e
Q 037346 556 K 556 (1156)
Q Consensus 556 ~ 556 (1156)
.
T Consensus 474 ~ 474 (517)
T 4ad8_A 474 V 474 (517)
T ss_dssp E
T ss_pred c
Confidence 3
|
| >1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D* | Back alignment and structure |
|---|
Probab=99.29 E-value=1.5e-12 Score=145.94 Aligned_cols=157 Identities=15% Similarity=0.140 Sum_probs=97.1
Q ss_pred CCCceeeCCCCCCHHHHHHHHhhcccCCCceEEEcCeeCCCCC----hHHH--hhcCeeeccccccccc-cchhccCCCC
Q 037346 960 NLPLVLRGRTGSGKSTLIQTLFRIVESTAGHILIDGKDISLIG----LHDL--RTRLSIIPQDPTMFEG-TTRSNLDPLE 1032 (1156)
Q Consensus 960 ~~~~vL~G~SGsGKSTL~~lL~rl~~p~~G~I~idG~di~~i~----~~~L--R~~i~~VpQdp~LF~g-TIr~Nl~~~~ 1032 (1156)
++.++|.|+|||||||+++.|.|++.|++|+|.++|.|+.... +..+ |..+++|+|++.++.. |+++|+....
T Consensus 102 g~vi~lvG~nGsGKTTll~~Lagll~~~~g~V~l~g~D~~r~~a~~ql~~~~~~~~i~~v~q~~~~~p~~~v~~~v~~~~ 181 (304)
T 1rj9_A 102 GRVVLVVGVNGVGKTTTIAKLGRYYQNLGKKVMFCAGDTFRAAGGTQLSEWGKRLSIPVIQGPEGTDSAALAYDAVQAMK 181 (304)
T ss_dssp SSEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEECCCCSSTTTTHHHHHHHHHHTCCEECCCTTCCHHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEeecCCChhHHHHHHHHHHhcCceEEEeCCCCCHHHHHHHHHHHHH
Confidence 3446788999999999999999999999999999999987754 2233 4579999999877653 6777763210
Q ss_pred C-CCHHHHHHHHHHcCCChHHHhhcCCcc----ccccccccCCC--EEEEecCCcCCCHHHHHHHHHHHHHhc--CCceE
Q 037346 1033 E-HADEQIWEALDKCQLGDEVRKKKGKLD----SQGRVLLKKSK--VLVLDEATASVDTATDNQIQQTLRQHF--SDCTV 1103 (1156)
Q Consensus 1033 ~-~~deei~~al~~~~l~~~i~~lp~gl~----s~ARALLr~~~--ILiLDEaTS~LD~~te~~I~~~l~~~~--~~~Tv 1103 (1156)
. ..|. ..++.+|..+.-..++..+. ..|||+..+|+ +|+|| ||++.|. .+.+++.. .+.|+
T Consensus 182 ~~~~d~---~llDt~G~~~~~~~~~~eLs~~r~~iaRal~~~P~~~lLvLD-a~t~~~~------~~~~~~~~~~~~~t~ 251 (304)
T 1rj9_A 182 ARGYDL---LFVDTAGRLHTKHNLMEELKKVKRAIAKADPEEPKEVWLVLD-AVTGQNG------LEQAKKFHEAVGLTG 251 (304)
T ss_dssp HHTCSE---EEECCCCCCTTCHHHHHHHHHHHHHHHHHCTTCCSEEEEEEE-TTBCTHH------HHHHHHHHHHHCCSE
T ss_pred hCCCCE---EEecCCCCCCchHHHHHHHHHHHHHHHHhhcCCCCeEEEEEc-HHHHHHH------HHHHHHHHHHcCCcE
Confidence 0 0000 01112222111111111111 22899999999 66677 5555443 22222221 27899
Q ss_pred EEeecCccccccc----------CEEEEEeCcE
Q 037346 1104 VTIAHRITSVLDS----------AMVLLLNHGL 1126 (1156)
Q Consensus 1104 I~IaHrl~ti~~~----------D~I~Vl~~G~ 1126 (1156)
|+|||...+.... -.|..+..|+
T Consensus 252 iivTh~d~~a~gg~~l~i~~~~~~pi~~ig~Ge 284 (304)
T 1rj9_A 252 VIVTKLDGTAKGGVLIPIVRTLKVPIKFVGVGE 284 (304)
T ss_dssp EEEECTTSSCCCTTHHHHHHHHCCCEEEEECSS
T ss_pred EEEECCcccccccHHHHHHHHHCCCeEEEeCCC
Confidence 9999986654322 3566666665
|
| >2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A* | Back alignment and structure |
|---|
Probab=99.29 E-value=5.3e-12 Score=135.05 Aligned_cols=148 Identities=17% Similarity=0.076 Sum_probs=95.0
Q ss_pred CccccceE-EeeCCeEEEEEcCCCCChHHHHHHHhCCCCCCCcEEEEcCeEEEEecCCcCCCccHHHHhhcCCCCCHHHH
Q 037346 374 PTLRNINL-KVFHGMRVAVCGTVGSGKSSCLSCILGGVPKESGIIRLCGTKAYVAQSPWIQSGKIEENILFGKEMDRERY 452 (1156)
Q Consensus 374 ~~l~~i~l-~i~~g~~~~ivG~~GsGKSTll~~i~g~~~~~~G~i~~~g~~~~v~Q~~~~~~~ti~eni~~~~~~~~~~~ 452 (1156)
+.|+++.. .+++|++++|+||+|||||||++.+++ ++ ++.+.|+..+..+. .++.
T Consensus 7 ~~LD~~l~Ggi~~G~~~~i~G~~GsGKTtl~~~l~~--~~-------~~~v~~i~~~~~~~---------------~~~~ 62 (220)
T 2cvh_A 7 KSLDSLLGGGFAPGVLTQVYGPYASGKTTLALQTGL--LS-------GKKVAYVDTEGGFS---------------PERL 62 (220)
T ss_dssp HHHHHHTTSSBCTTSEEEEECSTTSSHHHHHHHHHH--HH-------CSEEEEEESSCCCC---------------HHHH
T ss_pred HHHHHhhcCCCcCCEEEEEECCCCCCHHHHHHHHHH--Hc-------CCcEEEEECCCCCC---------------HHHH
Confidence 45777665 699999999999999999999999999 22 13455655544221 1222
Q ss_pred HHHHHHhCCch--hhhhCCCCCccccccCCCCCCHH--HHHHHHHHHhhccC-CCeeeeeCCCCCcCHHHH--------H
Q 037346 453 ERVLEACSLKK--DLEVLPFGDQTIIGERGINLSGG--QKQRIQIARPLYQD-ADIFLLDDPFSPVDDHTG--------A 519 (1156)
Q Consensus 453 ~~~~~~~~l~~--~~~~~~~g~~t~v~~~g~~LSgG--qkqRi~lAral~~~-~~illlDep~s~lD~~~~--------~ 519 (1156)
.+..+..++.. ..+.+ . ...+|++ |+|+++.+|++..+ |+++++|||++.+|+... .
T Consensus 63 ~~~~~~~~~~~~~~~~~~------~----~~~~~~~~~~~~~~~~~~~l~~~~~~lliiD~~~~~l~~~~~~~~~~~~~~ 132 (220)
T 2cvh_A 63 VQMAETRGLNPEEALSRF------I----LFTPSDFKEQRRVIGSLKKTVDSNFALVVVDSITAHYRAEENRSGLIAELS 132 (220)
T ss_dssp HHHHHTTTCCHHHHHHHE------E----EECCTTTSHHHHHHHHHHHHCCTTEEEEEEECCCCCTTGGGGSSTTHHHHH
T ss_pred HHHHHhcCCChHHHhhcE------E----EEecCCHHHHHHHHHHHHHHhhcCCCEEEEcCcHHHhhhcCchHHHHHHHH
Confidence 22222222210 01110 0 1123444 46789999999986 999999999999997421 2
Q ss_pred HHHHHHH---hcCCCEEEEEccCCCc-------------cc-cCCEEEEEeCC
Q 037346 520 HLFKFCW---VSSSKTVIYATHQVEF-------------LP-AADLILVIKDG 555 (1156)
Q Consensus 520 ~i~~~~~---~~~~~tvi~vtH~~~~-------------~~-~~d~i~~l~~G 555 (1156)
.+++.+. ...+.|+|+++|.... +. .||.|++|++.
T Consensus 133 ~~~~~L~~l~~~~~~~vi~~~h~~~~~~~~~~~p~~~~~~~~~~d~vi~l~~~ 185 (220)
T 2cvh_A 133 RQLQVLLWIARKHNIPVIVINQVHFDSRTEMTKPVAEQTLGYRCKDILRLDKL 185 (220)
T ss_dssp HHHHHHHHHHHHHTCCEEEEECSSSSCTTSSCCSCCCHHHHHTSSEEEEEEEC
T ss_pred HHHHHHHHHHHHcCCEEEEEeeEEEcCCCCccccCCCcceeecCcEEEEEEEe
Confidence 2333222 2347899999998652 33 59999999754
|
| >3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B | Back alignment and structure |
|---|
Probab=99.28 E-value=2.1e-11 Score=139.56 Aligned_cols=61 Identities=16% Similarity=0.208 Sum_probs=55.4
Q ss_pred ccccccCCCEEEEecCCcCCCHHHHHHHHHHHHHhc-CCceEEEeecCcccccccCEEEEEe
Q 037346 1063 GRVLLKKSKVLVLDEATASVDTATDNQIQQTLRQHF-SDCTVVTIAHRITSVLDSAMVLLLN 1123 (1156)
Q Consensus 1063 ARALLr~~~ILiLDEaTS~LD~~te~~I~~~l~~~~-~~~TvI~IaHrl~ti~~~D~I~Vl~ 1123 (1156)
|||++.+|++|||||||++||+.+...+.+.|+++. +++|+|+|+|+.+....||+|++|+
T Consensus 266 a~~l~~~p~~lllDEp~~~LD~~~~~~l~~~l~~~~~~~~~vi~~sH~~~~~~~~d~~~~l~ 327 (339)
T 3qkt_A 266 SLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLKKIPQVILVSHDEELKDAADHVIRIS 327 (339)
T ss_dssp HHHTTTTTCEEEEECCCTTCCHHHHHHHHHHHHHTGGGSSEEEEEESCGGGGGGCSEEEEEE
T ss_pred HHHhcCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEEChHHHHHhCCEEEEEE
Confidence 578889999999999999999999999999998764 4679999999988888899999986
|
| >2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2} | Back alignment and structure |
|---|
Probab=99.28 E-value=2.1e-12 Score=139.49 Aligned_cols=148 Identities=12% Similarity=0.062 Sum_probs=94.3
Q ss_pred cCCCCceeeCCCCCCHHHHHHHHhhcccCCCceEEEcCeeCCCCChHHHhh---cCeeeccccccccccchhccCC----
Q 037346 958 APNLPLVLRGRTGSGKSTLIQTLFRIVESTAGHILIDGKDISLIGLHDLRT---RLSIIPQDPTMFEGTTRSNLDP---- 1030 (1156)
Q Consensus 958 ~~~~~~vL~G~SGsGKSTL~~lL~rl~~p~~G~I~idG~di~~i~~~~LR~---~i~~VpQdp~LF~gTIr~Nl~~---- 1030 (1156)
++++-++|.|++|||||||++.|++...+.+|.+.+.+.+.. .+.+++ .+++.+|+.....-.+.++...
T Consensus 21 ~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~v~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (235)
T 2w0m_A 21 PQGFFIALTGEPGTGKTIFSLHFIAKGLRDGDPCIYVTTEES---RDSIIRQAKQFNWDFEEYIEKKLIIIDALMKEKED 97 (235)
T ss_dssp ETTCEEEEECSTTSSHHHHHHHHHHHHHHHTCCEEEEESSSC---HHHHHHHHHHTTCCCGGGBTTTEEEEECCC----C
T ss_pred cCCCEEEEEcCCCCCHHHHHHHHHHHHHHCCCeEEEEEcccC---HHHHHHHHHHhcchHHHHhhCCEEEEeccccccCc
Confidence 456667888999999999999999998888999988776543 344333 4666666532111111111110
Q ss_pred ---CCCCCHHHHHHHHHHcCCChHHHhhcCCccccccccccCCC--EEEEecCCcCC--CHHHHHHHHHHHHHhc--CCc
Q 037346 1031 ---LEEHADEQIWEALDKCQLGDEVRKKKGKLDSQGRVLLKKSK--VLVLDEATASV--DTATDNQIQQTLRQHF--SDC 1101 (1156)
Q Consensus 1031 ---~~~~~deei~~al~~~~l~~~i~~lp~gl~s~ARALLr~~~--ILiLDEaTS~L--D~~te~~I~~~l~~~~--~~~ 1101 (1156)
....+-+++.+.+. +.+...+|+ +||+||||+.+ |+.....+.+.|++.. .++
T Consensus 98 ~~~~~~~~~~~~~~~~~------------------~~~~~~~~~~~llilDe~~~~~~~d~~~~~~~~~~l~~~~~~~~~ 159 (235)
T 2w0m_A 98 QWSLVNLTPEELVNKVI------------------EAKQKLGYGKARLVIDSVSALFLDKPAMARKISYYLKRVLNKWNF 159 (235)
T ss_dssp TTBCSSCCHHHHHHHHH------------------HHHHHHCSSCEEEEEETGGGGSSSCGGGHHHHHHHHHHHHHHTTE
T ss_pred eeeecCCCHHHHHHHHH------------------HHHHhhCCCceEEEEECchHhhcCCHHHHHHHHHHHHHHHHhCCC
Confidence 00112122211111 111125899 99999999888 9988788888877653 488
Q ss_pred eEEEeecCc--------cccc-ccCEEEEEeCcE
Q 037346 1102 TVVTIAHRI--------TSVL-DSAMVLLLNHGL 1126 (1156)
Q Consensus 1102 TvI~IaHrl--------~ti~-~~D~I~Vl~~G~ 1126 (1156)
|+|+++|.. ..+. .||+|++|++.+
T Consensus 160 ~vi~~~h~~~~~~~~~~~~~~~~~d~vi~l~~~~ 193 (235)
T 2w0m_A 160 TIYATSQYAITTSQAFGFGVEHVADGIIRFRRMI 193 (235)
T ss_dssp EEEEEEC-----------CHHHHCSEEEEEEEEE
T ss_pred eEEEEeccCcccccccccchheeeeEEEEEEEEe
Confidence 999999998 3354 499999998653
|
| >2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.28 E-value=1.6e-12 Score=151.38 Aligned_cols=158 Identities=12% Similarity=0.147 Sum_probs=83.3
Q ss_pred eEEEEEEEEEEcCCC-------CceeeCCCCCCHHHHHHHHhhcccCCCceEEEcCeeCCCCChHHHhhcCeeecccccc
Q 037346 947 EVNIRHLQVRYAPNL-------PLVLRGRTGSGKSTLIQTLFRIVESTAGHILIDGKDISLIGLHDLRTRLSIIPQDPTM 1019 (1156)
Q Consensus 947 ~I~~~~Vsf~Y~~~~-------~~vL~G~SGsGKSTL~~lL~rl~~p~~G~I~idG~di~~i~~~~LR~~i~~VpQdp~L 1019 (1156)
.|.++||+++|+... .++|.|+||||||||++.|+|...|..| .+|.++...+ ...++.+++++|++.+
T Consensus 11 ~l~~~~l~~~y~~~~vl~~vsf~I~lvG~sGaGKSTLln~L~g~~~~~~~---~~~~~~~~~~-t~~~~~i~~v~q~~~~ 86 (418)
T 2qag_C 11 YVGFANLPNQVYRKSVKRGFEFTLMVVGESGLGKSTLINSLFLTDLYSPE---YPGPSHRIKK-TVQVEQSKVLIKEGGV 86 (418)
T ss_dssp ----CCCCCCTTTTTCC-CCCEEEEEECCTTSSHHHHHHHHTTCCCCCCC---CCSCC------CCEEEEEECC------
T ss_pred cEEEEecceeECCEEEecCCCEEEEEECCCCCcHHHHHHHHhCCCCCCCC---CCCcccCCcc-ceeeeeEEEEEecCCc
Confidence 355555555553211 1378899999999999999999876555 2444332211 1124668999999877
Q ss_pred c-cccchhccCCCCCCCHHHHHHHHHHcCCChHHHhhcCCccccccccccCCC---EEEEecCC-cCCCHHHHHHHHHHH
Q 037346 1020 F-EGTTRSNLDPLEEHADEQIWEALDKCQLGDEVRKKKGKLDSQGRVLLKKSK---VLVLDEAT-ASVDTATDNQIQQTL 1094 (1156)
Q Consensus 1020 F-~gTIr~Nl~~~~~~~deei~~al~~~~l~~~i~~lp~gl~s~ARALLr~~~---ILiLDEaT-S~LD~~te~~I~~~l 1094 (1156)
+ .-||.||+.++.....++.|+.+... +.+.....-.+-...|||++++|+ +|++|||| +++|+.... +.+.|
T Consensus 87 ~~~Ltv~Dt~g~~~~~~~~~~~~~i~~~-i~~~~~~~l~qr~~IaRal~~d~~~~vlL~ldePt~~~L~~~d~~-~lk~L 164 (418)
T 2qag_C 87 QLLLTIVDTPGFGDAVDNSNCWQPVIDY-IDSKFEDYLNAESRVNRRQMPDNRVQCCLYFIAPSGHGLKPLDIE-FMKRL 164 (418)
T ss_dssp CEEEEEEECC-----------CHHHHHH-HHHHHHHHTTTSCC-CCCCCCCC-CCEEEEECCC-CCSCCHHHHH-HHHHH
T ss_pred ccceeeeechhhhhhccchhhHHHHHHH-HHHHHHHHHHHHHHHHHHhccCCCeeEEEEEecCcccCCCHHHHH-HHHHH
Confidence 6 56999998765433322223222100 001111110111234899999999 99999999 699987642 33333
Q ss_pred HHhcCCceEEEeecCcccc
Q 037346 1095 RQHFSDCTVVTIAHRITSV 1113 (1156)
Q Consensus 1095 ~~~~~~~TvI~IaHrl~ti 1113 (1156)
..+.++|.|.|+.+++
T Consensus 165 ---~~~v~iIlVinK~Dll 180 (418)
T 2qag_C 165 ---HEKVNIIPLIAKADTL 180 (418)
T ss_dssp ---TTTSEEEEEEESTTSS
T ss_pred ---hccCcEEEEEEcccCc
Confidence 3578999999998765
|
| >2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A* | Back alignment and structure |
|---|
Probab=99.27 E-value=1.8e-13 Score=156.18 Aligned_cols=161 Identities=12% Similarity=0.061 Sum_probs=109.7
Q ss_pred EEEcCCCCceeeCCCCCCHHHHHHHHhhcccCCCceEEEcCeeCCCC-------ChHHHhhcCeeeccccccccccchhc
Q 037346 955 VRYAPNLPLVLRGRTGSGKSTLIQTLFRIVESTAGHILIDGKDISLI-------GLHDLRTRLSIIPQDPTMFEGTTRSN 1027 (1156)
Q Consensus 955 f~Y~~~~~~vL~G~SGsGKSTL~~lL~rl~~p~~G~I~idG~di~~i-------~~~~LR~~i~~VpQdp~LF~gTIr~N 1027 (1156)
|...+++..+|.|+||||||||+++|.|+.+|+.|.|.+.|.+.+++ ....+++.+.+++|..
T Consensus 66 l~i~~Gq~~gIiG~nGaGKTTLl~~I~g~~~~~~g~i~~~G~~~~ev~~~i~~~~~~~~~~~v~~~~~~~---------- 135 (347)
T 2obl_A 66 LTCGIGQRIGIFAGSGVGKSTLLGMICNGASADIIVLALIGERGREVNEFLALLPQSTLSKCVLVVTTSD---------- 135 (347)
T ss_dssp SCEETTCEEEEEECTTSSHHHHHHHHHHHSCCSEEEEEEESCCHHHHHHHHTTSCHHHHTTEEEEEECTT----------
T ss_pred eeecCCCEEEEECCCCCCHHHHHHHHhcCCCCCEEEEEEecccHHHHHHHHHhhhhhhhhceEEEEECCC----------
Confidence 44445666678899999999999999999999999999999753211 1122333344444321
Q ss_pred cCCCCCCCHHHHHHHHHHcCCChHH--------------HhhcCCccccccccccCCCEEEEecCCcCCCHHHHHHHHHH
Q 037346 1028 LDPLEEHADEQIWEALDKCQLGDEV--------------RKKKGKLDSQGRVLLKKSKVLVLDEATASVDTATDNQIQQT 1093 (1156)
Q Consensus 1028 l~~~~~~~deei~~al~~~~l~~~i--------------~~lp~gl~s~ARALLr~~~ILiLDEaTS~LD~~te~~I~~~ 1093 (1156)
....+.+..++..+.+.++. .++.+|+...+-| +.+|++ |+++|+.....+.+.
T Consensus 136 -----~~~~~r~~~~~~~~~~ae~~~~~~~~vl~~ld~~~~lS~g~r~v~la-l~~p~~------t~Gldp~~~~~l~~l 203 (347)
T 2obl_A 136 -----RPALERMKAAFTATTIAEYFRDQGKNVLLMMDSVTRYARAARDVGLA-SGEPDV------RGGFPPSVFSSLPKL 203 (347)
T ss_dssp -----SCHHHHHHHHHHHHHHHHHHHTTTCEEEEEEETHHHHHHHHHHHHHH-TTCCCC------BTTBCHHHHHHHHHH
T ss_pred -----CCHHHHHHHHHHHHHHHHHHHhccccHHHHHhhHHHHHHHHHHHHHH-cCCCCc------ccCCCHHHHHHHHHH
Confidence 11123444444433333332 2222222111234 577777 999999999999999
Q ss_pred HHHhc---CCc-----eEEEeecCcccccccCEEEEEeCcEEeeecChhHHhc
Q 037346 1094 LRQHF---SDC-----TVVTIAHRITSVLDSAMVLLLNHGLIKEYDSPTKLLE 1138 (1156)
Q Consensus 1094 l~~~~---~~~-----TvI~IaHrl~ti~~~D~I~Vl~~G~IvE~G~~~eLl~ 1138 (1156)
+++.. +|. ||++++|+++ -.-||++++|.+|+|+..|+++++..
T Consensus 204 ler~~~~~~GsiT~~~tVl~~thdl~-~~i~d~v~~i~dG~Ivl~~~l~~~~~ 255 (347)
T 2obl_A 204 LERAGPAPKGSITAIYTVLLESDNVN-DPIGDEVRSILDGHIVLTRELAEENH 255 (347)
T ss_dssp HTTCEECSSSEEEEEEEEECCSSCCC-CHHHHHHHHHCSEEEEBCHHHHTTTC
T ss_pred HHHHhCCCCCCeeeEEEEEEeCCCCC-ChhhhheEEeeCcEEEEeCCHHHcCC
Confidence 98875 366 9999999998 55699999999999999999888753
|
| >4ad8_A DNA repair protein RECN; DNA binding protein, ATPase domain; HET: DNA; 4.00A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=99.27 E-value=9.9e-13 Score=159.38 Aligned_cols=63 Identities=13% Similarity=0.131 Sum_probs=59.1
Q ss_pred ccccccCC--CEEEEecCCcCCCHHHHHHHHHHHHHhcCCceEEEeecCcccccccCEEEEEeCc
Q 037346 1063 GRVLLKKS--KVLVLDEATASVDTATDNQIQQTLRQHFSDCTVVTIAHRITSVLDSAMVLLLNHG 1125 (1156)
Q Consensus 1063 ARALLr~~--~ILiLDEaTS~LD~~te~~I~~~l~~~~~~~TvI~IaHrl~ti~~~D~I~Vl~~G 1125 (1156)
||||+.+| ++|||||||++||+.+...|.+.|+++.+++|||+|||+++.+..||+|+||++|
T Consensus 409 a~~l~~~~~~~~lilDEp~~gld~~~~~~i~~~l~~~~~~~~vi~itH~~~~~~~~d~~~~~~~~ 473 (517)
T 4ad8_A 409 AVSTVLGADTPSVVFDEVDAGIGGAAAIAVAEQLSRLADTRQVLVVTHLAQIAARAHHHYKVEKQ 473 (517)
T ss_dssp HHHHHHCCCSSEEEECSCSSSCCTHHHHHHHHHHHHHHHHSEEEEECCCHHHHHHSSEEEEEECC
T ss_pred HHHHHhCCCCCEEEEeCCcCCCCHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHhCCEEEEEecc
Confidence 78999999 9999999999999999999999999887789999999999999999999999554
|
| >3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP} | Back alignment and structure |
|---|
Probab=99.25 E-value=1.5e-13 Score=146.07 Aligned_cols=115 Identities=18% Similarity=0.179 Sum_probs=86.2
Q ss_pred eeCCeEEEEEcCCCCChHHHHHHHhCCCCCCCcEEEEcCeEEEEecCCcCCCccHHHHhhc----CC--CCCHHHHHHHH
Q 037346 383 VFHGMRVAVCGTVGSGKSSCLSCILGGVPKESGIIRLCGTKAYVAQSPWIQSGKIEENILF----GK--EMDRERYERVL 456 (1156)
Q Consensus 383 i~~g~~~~ivG~~GsGKSTll~~i~g~~~~~~G~i~~~g~~~~v~Q~~~~~~~ti~eni~~----~~--~~~~~~~~~~~ 456 (1156)
.++|++++|+||||||||||+++|+|.++|. | ...++++|+...+..+..+|+.. +. .++.....+.+
T Consensus 19 ~~~g~~v~I~G~sGsGKSTl~~~l~~~~~~~-g-----~~~g~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 92 (208)
T 3c8u_A 19 QPGRQLVALSGAPGSGKSTLSNPLAAALSAQ-G-----LPAEVVPMDGFHLDNRLLEPRGLLPRKGAPETFDFEGFQRLC 92 (208)
T ss_dssp CCSCEEEEEECCTTSCTHHHHHHHHHHHHHT-T-----CCEEEEESGGGBCCHHHHGGGTCGGGTTSGGGBCHHHHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHHhhc-C-----CceEEEecCCCcCCHHHHHHhcccccCCCCchhhHHHHHHHH
Confidence 5789999999999999999999999999875 4 25788899888877777777631 11 13433333333
Q ss_pred HHhCCchhhhhCCCCCccccccCCCCCCHHHHHHHHHH-HhhccCCCeeeeeCCC
Q 037346 457 EACSLKKDLEVLPFGDQTIIGERGINLSGGQKQRIQIA-RPLYQDADIFLLDDPF 510 (1156)
Q Consensus 457 ~~~~l~~~~~~~~~g~~t~v~~~g~~LSgGqkqRi~lA-ral~~~~~illlDep~ 510 (1156)
...... ....+.+.+++..+||||+||+++| |+++.++.++++|||.
T Consensus 93 ~~l~~~-------~~i~~p~~d~~~~~~~g~~~~v~~~~~~~i~eg~~~l~de~~ 140 (208)
T 3c8u_A 93 HALKHQ-------ERVIYPLFDRARDIAIAGAAEVGPECRVAIIEGNYLLFDAPG 140 (208)
T ss_dssp HHHHHC-------SCEEEEEEETTTTEEEEEEEEECTTCCEEEEEESSTTBCSTT
T ss_pred HHHhcC-------CceecccCCccccCCCCCceEEcCCCcEEEECCceeccCCch
Confidence 322110 1244566788899999999999998 9999999999999984
|
| >1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11 | Back alignment and structure |
|---|
Probab=99.25 E-value=4.5e-12 Score=137.87 Aligned_cols=146 Identities=18% Similarity=0.164 Sum_probs=92.6
Q ss_pred cCCCCceeeCCCCCCHHHHHHHHhh--cccC-----CCceEEEcCeeCCC-CChHHHhhcCeeeccccccccccchhccC
Q 037346 958 APNLPLVLRGRTGSGKSTLIQTLFR--IVES-----TAGHILIDGKDISL-IGLHDLRTRLSIIPQDPTMFEGTTRSNLD 1029 (1156)
Q Consensus 958 ~~~~~~vL~G~SGsGKSTL~~lL~r--l~~p-----~~G~I~idG~di~~-i~~~~LR~~i~~VpQdp~LF~gTIr~Nl~ 1029 (1156)
++++-++|.||+|||||||++.|++ ..+| .+|.+++++.+... -.+..+++++++.+|+ +.+|+.
T Consensus 22 ~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~g~~~~~~~~i~~~~~~~~~~~~~~~~~~g~~~~~-------~~~~~~ 94 (243)
T 1n0w_A 22 ETGSITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTEGTFRPERLLAVAERYGLSGSD-------VLDNVA 94 (243)
T ss_dssp ETTSEEEEECCTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCHHHHHHHHHHTTCCHHH-------HHHTEE
T ss_pred cCCeEEEEECCCCCcHHHHHHHHHHHHhCchhcCCCCCeEEEEECCCCcCHHHHHHHHHHcCCCHHH-------HhhCeE
Confidence 3556668889999999999999999 5554 67899999986321 2244566778888875 456765
Q ss_pred CCCCCCHHHHHHHHHHcCCChHHHhhcCCccccccccccCCCEEEEecCCcCCCHH-------HHHH--HHH---HHHHh
Q 037346 1030 PLEEHADEQIWEALDKCQLGDEVRKKKGKLDSQGRVLLKKSKVLVLDEATASVDTA-------TDNQ--IQQ---TLRQH 1097 (1156)
Q Consensus 1030 ~~~~~~deei~~al~~~~l~~~i~~lp~gl~s~ARALLr~~~ILiLDEaTS~LD~~-------te~~--I~~---~l~~~ 1097 (1156)
.....+.++..+.++.+ .+.+. -.+|++|++||+|+.+|++ +++. +.+ .|.+.
T Consensus 95 ~~~~~~~~~~~~~~~~~--~~~~~-------------~~~~~lliiD~~~~~~~~~~~~~~~~~~r~~~~~~~~~~l~~~ 159 (243)
T 1n0w_A 95 YARAFNTDHQTQLLYQA--SAMMV-------------ESRYALLIVDSATALYRTDYSGRGELSARQMHLARFLRMLLRL 159 (243)
T ss_dssp EEECCSHHHHHHHHHHH--HHHHH-------------HSCEEEEEEETSSGGGC-------CHHHHHHHHHHHHHHHHHH
T ss_pred EEecCCHHHHHHHHHHH--HHHHh-------------cCCceEEEEeCchHHHHHHhcCCccHHHHHHHHHHHHHHHHHH
Confidence 44444545544443221 11111 1579999999999999986 4322 333 33332
Q ss_pred c--CCceEEEeecCccccc--------------------ccCEEEEEeCc
Q 037346 1098 F--SDCTVVTIAHRITSVL--------------------DSAMVLLLNHG 1125 (1156)
Q Consensus 1098 ~--~~~TvI~IaHrl~ti~--------------------~~D~I~Vl~~G 1125 (1156)
. .++|||+++|-..... .||.|++|++|
T Consensus 160 ~~~~~~tvi~~~h~~~~~~~~~~~~~~~~~~~g~~~~~~~~d~vi~l~~~ 209 (243)
T 1n0w_A 160 ADEFGVAVVITNQVVAQVDGAAMFAADPKKPIGGNIIAHASTTRLYLRKG 209 (243)
T ss_dssp HHHHCCEEEEEC-------------------------CCTTCEEEEEEEC
T ss_pred HHHcCCEEEEEeeeeecCCCccccCCCcccCCccChhhhcCcEEEEEEEc
Confidence 2 3899999999654322 58999999875
|
| >1ewq_A DNA mismatch repair protein MUTS; multiple domains of protein, mostly mixed alpha-beta structures, one domain is entirely helical; HET: DNA; 2.20A {Thermus aquaticus} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1nne_A* 1fw6_A* 1ewr_A* | Back alignment and structure |
|---|
Probab=99.24 E-value=1.1e-12 Score=163.72 Aligned_cols=132 Identities=15% Similarity=0.195 Sum_probs=92.8
Q ss_pred CeEEEEEEEEEEcCCCCceeeCCCCCCHHHHHHHHhhccc-CCCceEEEcCeeCCCCChHHHhhcCeeecccccccc-cc
Q 037346 946 GEVNIRHLQVRYAPNLPLVLRGRTGSGKSTLIQTLFRIVE-STAGHILIDGKDISLIGLHDLRTRLSIIPQDPTMFE-GT 1023 (1156)
Q Consensus 946 g~I~~~~Vsf~Y~~~~~~vL~G~SGsGKSTL~~lL~rl~~-p~~G~I~idG~di~~i~~~~LR~~i~~VpQdp~LF~-gT 1023 (1156)
+...++|++|. ++.++|.|||||||||+++++.|+.. ++.|.+. + ..+..+++++| +|. -+
T Consensus 565 ~~~vl~disl~---g~i~~I~GpNGsGKSTlLr~iagl~~~~~~G~~v---------p--a~~~~i~~v~~---i~~~~~ 627 (765)
T 1ewq_A 565 TEFVPNDLEMA---HELVLITGPNMAGKSTFLRQTALIALLAQVGSFV---------P--AEEAHLPLFDG---IYTRIG 627 (765)
T ss_dssp SCCCCEEEEES---SCEEEEESCSSSSHHHHHHHHHHHHHHHTTTCCB---------S--SSEEEECCCSE---EEEECC
T ss_pred CceEeeeccCC---CcEEEEECCCCCChHHHHHHHHhhhhhcccCcee---------e--hhccceeeHHH---hhccCC
Confidence 34578899987 66678999999999999999999974 6788752 1 12567899988 565 48
Q ss_pred chhccCCCCCCCHHHHHHHHHHcCCChHHHhhcCCcccccccc--ccCCCEEEEecC---CcCCCHHHH-HHHHHHHHHh
Q 037346 1024 TRSNLDPLEEHADEQIWEALDKCQLGDEVRKKKGKLDSQGRVL--LKKSKVLVLDEA---TASVDTATD-NQIQQTLRQH 1097 (1156)
Q Consensus 1024 Ir~Nl~~~~~~~deei~~al~~~~l~~~i~~lp~gl~s~ARAL--Lr~~~ILiLDEa---TS~LD~~te-~~I~~~l~~~ 1097 (1156)
+.+|+..+...-..+.. ..++++ +.+|+++||||| ||++|..+. ..|.+.|.+
T Consensus 628 ~~d~l~~g~S~~~~e~~--------------------~la~il~~a~~p~LlLLDEpgrGTs~lD~~~~~~~i~~~L~~- 686 (765)
T 1ewq_A 628 ASDDLAGGKSTFMVEME--------------------EVALILKEATENSLVLLDEVGRGTSSLDGVAIATAVAEALHE- 686 (765)
T ss_dssp C------CCSHHHHHHH--------------------HHHHHHHHCCTTEEEEEESTTTTSCHHHHHHHHHHHHHHHHH-
T ss_pred HHHHHHhcccHHHHHHH--------------------HHHHHHHhccCCCEEEEECCCCCCCCcCHHHHHHHHHHHHHh-
Confidence 88988643210011111 124555 889999999999 999999886 478888877
Q ss_pred cCCceEEEeecCccccccc
Q 037346 1098 FSDCTVVTIAHRITSVLDS 1116 (1156)
Q Consensus 1098 ~~~~TvI~IaHrl~ti~~~ 1116 (1156)
.++|+|++||+.+...-+
T Consensus 687 -~g~~vl~~TH~~~l~~~~ 704 (765)
T 1ewq_A 687 -RRAYTLFATHYFELTALG 704 (765)
T ss_dssp -HTCEEEEECCCHHHHTCC
T ss_pred -CCCEEEEEeCCHHHHHhh
Confidence 589999999998765443
|
| >1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20 | Back alignment and structure |
|---|
Probab=99.23 E-value=8.8e-12 Score=143.85 Aligned_cols=134 Identities=17% Similarity=0.247 Sum_probs=80.4
Q ss_pred ceeeCCCCCCHHHHHHHHhh-cccCCCceEEEcCeeCCCCChHHHhhcCeeeccccccccccchhccCCCCCCCHHHHHH
Q 037346 963 LVLRGRTGSGKSTLIQTLFR-IVESTAGHILIDGKDISLIGLHDLRTRLSIIPQDPTMFEGTTRSNLDPLEEHADEQIWE 1041 (1156)
Q Consensus 963 ~vL~G~SGsGKSTL~~lL~r-l~~p~~G~I~idG~di~~i~~~~LR~~i~~VpQdp~LF~gTIr~Nl~~~~~~~deei~~ 1041 (1156)
+.|.||+|+||||++++|.| ++.|..|.|.++|.++..... -+..+++++|++++.-.. .+. .....+.+.+
T Consensus 39 ~ll~Gp~G~GKTtl~~~la~~l~~~~~g~i~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~----~~~-~~~~~~~~~~ 111 (354)
T 1sxj_E 39 LLLYGPNGTGKKTRCMALLESIFGPGVYRLKIDVRQFVTASN--RKLELNVVSSPYHLEITP----SDM-GNNDRIVIQE 111 (354)
T ss_dssp EEEECSTTSSHHHHHHTHHHHHSCTTCCC--------------------CCEECSSEEEECC----C-----CCHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHHcCCCCCeEEecceeeccccc--ccceeeeecccceEEecH----hhc-CCcchHHHHH
Confidence 67889999999999999999 899999999999988765333 267899999998753110 011 1111223444
Q ss_pred HHHH----cCCChHHHhhcCCccccccccccCCCEEEEecCCcCCCHHHHHHHHHHHHHhcCCceEEEeecCcccc
Q 037346 1042 ALDK----CQLGDEVRKKKGKLDSQGRVLLKKSKVLVLDEATASVDTATDNQIQQTLRQHFSDCTVVTIAHRITSV 1113 (1156)
Q Consensus 1042 al~~----~~l~~~i~~lp~gl~s~ARALLr~~~ILiLDEaTS~LD~~te~~I~~~l~~~~~~~TvI~IaHrl~ti 1113 (1156)
.++. .++.+++ .++ .+..+|+|+|||||++ ||.++...+.+.+++..+++++|++||+++.+
T Consensus 112 ~i~~~~~~~~~~~~~-~ls--------~l~~~~~vlilDE~~~-L~~~~~~~L~~~le~~~~~~~~Il~t~~~~~l 177 (354)
T 1sxj_E 112 LLKEVAQMEQVDFQD-SKD--------GLAHRYKCVIINEANS-LTKDAQAALRRTMEKYSKNIRLIMVCDSMSPI 177 (354)
T ss_dssp HHHHHTTTTC---------------------CCEEEEEECTTS-SCHHHHHHHHHHHHHSTTTEEEEEEESCSCSS
T ss_pred HHHHHHHhccccccc-ccc--------ccCCCCeEEEEeCccc-cCHHHHHHHHHHHHhhcCCCEEEEEeCCHHHH
Confidence 3333 3333332 111 1678999999999999 99999999999999877788999999998654
|
| >2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A* | Back alignment and structure |
|---|
Probab=99.20 E-value=3.6e-12 Score=139.08 Aligned_cols=160 Identities=13% Similarity=0.161 Sum_probs=93.4
Q ss_pred CeEEEEEEEEEEcCCCCceeeCCCCCCHHHHHHHHhhcccCCCceEEEcCeeCCCCChHHHhhcCeeeccccccccccch
Q 037346 946 GEVNIRHLQVRYAPNLPLVLRGRTGSGKSTLIQTLFRIVESTAGHILIDGKDISLIGLHDLRTRLSIIPQDPTMFEGTTR 1025 (1156)
Q Consensus 946 g~I~~~~Vsf~Y~~~~~~vL~G~SGsGKSTL~~lL~rl~~p~~G~I~idG~di~~i~~~~LR~~i~~VpQdp~LF~gTIr 1025 (1156)
+...++||||.-+++.-++|.|++|||||||+++|.+++ |.+.+| ..++.+++|+|+++...-|.+
T Consensus 11 ~~~~l~~isl~i~~g~iigI~G~~GsGKSTl~k~L~~~l----G~~~~~----------~~~~~i~~v~~d~~~~~l~~~ 76 (245)
T 2jeo_A 11 VDLGTENLYFQSMRPFLIGVSGGTASGKSTVCEKIMELL----GQNEVE----------QRQRKVVILSQDRFYKVLTAE 76 (245)
T ss_dssp ------------CCSEEEEEECSTTSSHHHHHHHHHHHH----TGGGSC----------GGGCSEEEEEGGGGBCCCCHH
T ss_pred CceeecceeccCCCCEEEEEECCCCCCHHHHHHHHHHHh----chhccc----------ccCCceEEEeCCcCccccCHh
Confidence 345799999999888878899999999999999999987 655554 367889999999744345777
Q ss_pred hccCC------C-C--CCCHHHHHHHHHHcCCChHHHhhcCCcccc------ccccccCCCEEEEecCCcCCCHHHHHHH
Q 037346 1026 SNLDP------L-E--EHADEQIWEALDKCQLGDEVRKKKGKLDSQ------GRVLLKKSKVLVLDEATASVDTATDNQI 1090 (1156)
Q Consensus 1026 ~Nl~~------~-~--~~~deei~~al~~~~l~~~i~~lp~gl~s~------ARALLr~~~ILiLDEaTS~LD~~te~~I 1090 (1156)
+|+.. + + ....+++.+.|+.. .+.....+..|+.+ -++++.+|+++|||||....|..
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l--~~~~~~~~~~ls~g~~~r~~~~~~~~~~~~lilDg~~~~~~~~----- 149 (245)
T 2jeo_A 77 QKAKALKGQYNFDHPDAFDNDLMHRTLKNI--VEGKTVEVPTYDFVTHSRLPETTVVYPADVVLFEGILVFYSQE----- 149 (245)
T ss_dssp HHHHHHTTCCCTTSGGGBCHHHHHHHHHHH--HTTCCEEECCEETTTTEECSSCEEECCCSEEEEECTTTTTSHH-----
T ss_pred HhhhhhccCCCCCCcccccHHHHHHHHHHH--HCCCCeecccccccccCccCceEEecCCCEEEEeCccccccHH-----
Confidence 77531 1 1 12234455665542 11111112223222 25778899999999988777754
Q ss_pred HHHHHHhcCCceEEEeecCcccc-cc-cCEEEEEeCcEEeeecChhHHhc
Q 037346 1091 QQTLRQHFSDCTVVTIAHRITSV-LD-SAMVLLLNHGLIKEYDSPTKLLE 1138 (1156)
Q Consensus 1091 ~~~l~~~~~~~TvI~IaHrl~ti-~~-~D~I~Vl~~G~IvE~G~~~eLl~ 1138 (1156)
+.+. .+.|++++||....+ +. ++.+ ++|+ +++++++
T Consensus 150 ---l~~~-~~~~i~v~th~~~~~~r~~~r~~---~~G~-----~~e~~~~ 187 (245)
T 2jeo_A 150 ---IRDM-FHLRLFVDTDSDVRLSRRVLRDV---RRGR-----DLEQILT 187 (245)
T ss_dssp ---HHTT-CSEEEEEECCHHHHHHHHHHHHT---C--------CHHHHHH
T ss_pred ---HHHh-cCeEEEEECCHHHHHHHHHHHHH---HcCC-----CHHHHHH
Confidence 2333 388999999974333 22 2223 6675 5666653
|
| >1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A | Back alignment and structure |
|---|
Probab=99.19 E-value=2.9e-13 Score=136.64 Aligned_cols=80 Identities=14% Similarity=0.112 Sum_probs=67.9
Q ss_pred eeeEEEeCCCCCCCccccceEEeeCCeEEEEEcCCCCChHHHHHHHhCCCCCCCcEEEEcCeE--------EEEecCCcC
Q 037346 361 IDGSFSWDFSSPNPTLRNINLKVFHGMRVAVCGTVGSGKSSCLSCILGGVPKESGIIRLCGTK--------AYVAQSPWI 432 (1156)
Q Consensus 361 ~~~~f~~~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKSTll~~i~g~~~~~~G~i~~~g~~--------~~v~Q~~~~ 432 (1156)
+|+++.|+ +..+++++||++++|++++|+||||||||||+++|+|.+ |++|+|.++|.. .|++|++.+
T Consensus 11 ~~~~~~~g---~~~~l~~vsl~i~~Ge~v~L~G~nGaGKTTLlr~l~g~l-~~~G~V~~~g~~i~~~~~~~~~~~q~~~l 86 (158)
T 1htw_A 11 EFSMLRFG---KKFAEILLKLHTEKAIMVYLNGDLGAGKTTLTRGMLQGI-GHQGNVKSPTYTLVEEYNIAGKMIYHFDL 86 (158)
T ss_dssp HHHHHHHH---HHHHHHHHHHCCSSCEEEEEECSTTSSHHHHHHHHHHHT-TCCSCCCCCTTTCEEEEEETTEEEEEEEC
T ss_pred HHHHHHHH---HHHHHhccccccCCCCEEEEECCCCCCHHHHHHHHHHhC-CCCCeEEECCEeeeeeccCCCcceecccc
Confidence 35566664 346899999999999999999999999999999999999 999999988731 268999888
Q ss_pred CCccHHHHhh-cC
Q 037346 433 QSGKIEENIL-FG 444 (1156)
Q Consensus 433 ~~~ti~eni~-~~ 444 (1156)
+..|+.||+. +|
T Consensus 87 ~~ltv~e~l~~~g 99 (158)
T 1htw_A 87 YRLADPEELEFMG 99 (158)
T ss_dssp TTCSCTTHHHHST
T ss_pred ccCCcHHHHHHcC
Confidence 8779999985 45
|
| >2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A* | Back alignment and structure |
|---|
Probab=99.19 E-value=9.9e-12 Score=132.94 Aligned_cols=140 Identities=16% Similarity=0.086 Sum_probs=85.2
Q ss_pred cCCCCceeeCCCCCCHHHHHHHHhhcccCCCceEEEcCeeCCCCChHHHhhc---CeeeccccccccccchhccCCCCCC
Q 037346 958 APNLPLVLRGRTGSGKSTLIQTLFRIVESTAGHILIDGKDISLIGLHDLRTR---LSIIPQDPTMFEGTTRSNLDPLEEH 1034 (1156)
Q Consensus 958 ~~~~~~vL~G~SGsGKSTL~~lL~rl~~p~~G~I~idG~di~~i~~~~LR~~---i~~VpQdp~LF~gTIr~Nl~~~~~~ 1034 (1156)
++++-.+|.|++|||||||++.+++ .+..+.+++++.+ ..+.+.+++. .++-++ .+.+|+.+....
T Consensus 18 ~~G~~~~i~G~~GsGKTtl~~~l~~--~~~~~v~~i~~~~--~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~ 86 (220)
T 2cvh_A 18 APGVLTQVYGPYASGKTTLALQTGL--LSGKKVAYVDTEG--GFSPERLVQMAETRGLNPE-------EALSRFILFTPS 86 (220)
T ss_dssp CTTSEEEEECSTTSSHHHHHHHHHH--HHCSEEEEEESSC--CCCHHHHHHHHHTTTCCHH-------HHHHHEEEECCT
T ss_pred cCCEEEEEECCCCCCHHHHHHHHHH--HcCCcEEEEECCC--CCCHHHHHHHHHhcCCChH-------HHhhcEEEEecC
Confidence 3455567889999999999999999 5555667777643 2344444432 111111 122232221111
Q ss_pred CHHHHHHHHHHcCCChHHHhhcCCccccccccccC-CCEEEEecCCcCCCHHHH--------HHHHHHHHHhcC--CceE
Q 037346 1035 ADEQIWEALDKCQLGDEVRKKKGKLDSQGRVLLKK-SKVLVLDEATASVDTATD--------NQIQQTLRQHFS--DCTV 1103 (1156)
Q Consensus 1035 ~deei~~al~~~~l~~~i~~lp~gl~s~ARALLr~-~~ILiLDEaTS~LD~~te--------~~I~~~l~~~~~--~~Tv 1103 (1156)
+-++..+ .-..+|+++++ |+++|+||||+.+|+..+ ..+.+.|+++.+ ++||
T Consensus 87 ~~~~~~~-----------------~~~~~~~l~~~~~~lliiD~~~~~l~~~~~~~~~~~~~~~~~~~L~~l~~~~~~~v 149 (220)
T 2cvh_A 87 DFKEQRR-----------------VIGSLKKTVDSNFALVVVDSITAHYRAEENRSGLIAELSRQLQVLLWIARKHNIPV 149 (220)
T ss_dssp TTSHHHH-----------------HHHHHHHHCCTTEEEEEEECCCCCTTGGGGSSTTHHHHHHHHHHHHHHHHHHTCCE
T ss_pred CHHHHHH-----------------HHHHHHHHhhcCCCEEEEcCcHHHhhhcCchHHHHHHHHHHHHHHHHHHHHcCCEE
Confidence 1111100 01126778875 999999999999997543 234444555433 8999
Q ss_pred EEeecCcccc--------------cccCEEEEEeCc
Q 037346 1104 VTIAHRITSV--------------LDSAMVLLLNHG 1125 (1156)
Q Consensus 1104 I~IaHrl~ti--------------~~~D~I~Vl~~G 1125 (1156)
|+++|..... ..||+|++|++.
T Consensus 150 i~~~h~~~~~~~~~~~p~~~~~~~~~~d~vi~l~~~ 185 (220)
T 2cvh_A 150 IVINQVHFDSRTEMTKPVAEQTLGYRCKDILRLDKL 185 (220)
T ss_dssp EEEECSSSSCTTSSCCSCCCHHHHHTSSEEEEEEEC
T ss_pred EEEeeEEEcCCCCccccCCCcceeecCcEEEEEEEe
Confidence 9999987632 469999999864
|
| >2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V | Back alignment and structure |
|---|
Probab=99.18 E-value=2.3e-12 Score=146.33 Aligned_cols=114 Identities=17% Similarity=0.125 Sum_probs=76.3
Q ss_pred CccccceEEeeCCeEEEEEcCCCCChHHHHHHHhCCCC-CCCcEEEEc-C---------eEEEEecCCcCCCc-cHHHHh
Q 037346 374 PTLRNINLKVFHGMRVAVCGTVGSGKSSCLSCILGGVP-KESGIIRLC-G---------TKAYVAQSPWIQSG-KIEENI 441 (1156)
Q Consensus 374 ~~l~~i~l~i~~g~~~~ivG~~GsGKSTll~~i~g~~~-~~~G~i~~~-g---------~~~~v~Q~~~~~~~-ti~eni 441 (1156)
.-++++++. .+|++++|+||||||||||+++|+|..+ |..|+|.++ | .+++++|+++++.. +++++-
T Consensus 204 ~gl~~L~~~-~~G~~~~lvG~sG~GKSTLln~L~g~~~~~~~G~I~~~~G~g~~tt~~~~i~~v~q~~~l~dtpgv~e~~ 282 (358)
T 2rcn_A 204 DGLKPLEEA-LTGRISIFAGQSGVGKSSLLNALLGLQNEILTNDVSNVSGLGQHTTTAARLYHFPHGGDVIDSPGVREFG 282 (358)
T ss_dssp BTHHHHHHH-HTTSEEEEECCTTSSHHHHHHHHHCCSSCCCCC-------------CCCEEEECTTSCEEEECHHHHTCC
T ss_pred cCHHHHHHh-cCCCEEEEECCCCccHHHHHHHHhccccccccCCccccCCCCccceEEEEEEEECCCCEecCcccHHHhh
Confidence 357788774 4899999999999999999999999999 999999876 4 47999999987654 899864
Q ss_pred hcCCCCCHHHHHHHHHHhCCchhhhhCCCCCccccccCCCCCCHHHHHHHHHHHhhc
Q 037346 442 LFGKEMDRERYERVLEACSLKKDLEVLPFGDQTIIGERGINLSGGQKQRIQIARPLY 498 (1156)
Q Consensus 442 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~t~v~~~g~~LSgGqkqRi~lAral~ 498 (1156)
+.+ .+.+...+. ..+.++.+ |.....+....+|| ||+||++||+++.
T Consensus 283 l~~--l~~~e~~~~-----~~e~l~~~--gl~~f~~~~~~~lS-G~~~r~ala~gli 329 (358)
T 2rcn_A 283 LWH--LEPEQITQG-----FVEFHDYL--GHCKYRDCKHDADP-GCAIREAVENGAI 329 (358)
T ss_dssp CCC--CCHHHHHHT-----SGGGGGGT--TCSSSTTCCSSSCT-TCHHHHHHHHTSS
T ss_pred hcC--CCHHHHHHH-----HHHHHHHc--CCchhcCCCcccCC-HHHHHHHHHhcCC
Confidence 432 233222111 11112211 12222344557899 9999999999864
|
| >2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25 | Back alignment and structure |
|---|
Probab=99.18 E-value=3.7e-14 Score=148.40 Aligned_cols=161 Identities=11% Similarity=-0.031 Sum_probs=98.1
Q ss_pred CeEEEEEcCCCCChHHHHHHHhCCCCCCCcEEEEcCe-------EEEEecCCcC-CCccHHHHhhcCCCCCHHHHHHHHH
Q 037346 386 GMRVAVCGTVGSGKSSCLSCILGGVPKESGIIRLCGT-------KAYVAQSPWI-QSGKIEENILFGKEMDRERYERVLE 457 (1156)
Q Consensus 386 g~~~~ivG~~GsGKSTll~~i~g~~~~~~G~i~~~g~-------~~~v~Q~~~~-~~~ti~eni~~~~~~~~~~~~~~~~ 457 (1156)
|++++|+||||||||||++.|++ +.+|.+.++|. .++++|.+.. ...++++|+.+. ......
T Consensus 2 g~ii~l~G~~GaGKSTl~~~L~~---~~~g~~~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-------~~~~~~ 71 (189)
T 2bdt_A 2 KKLYIITGPAGVGKSTTCKRLAA---QLDNSAYIEGDIINHMVVGGYRPPWESDELLALTWKNITDL-------TVNFLL 71 (189)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHH---HSSSEEEEEHHHHHTTCCTTCCCGGGCHHHHHHHHHHHHHH-------HHHHHH
T ss_pred CeEEEEECCCCCcHHHHHHHHhc---ccCCeEEEcccchhhhhccccccCccchhHHHHHHHHHHHH-------HHHHHh
Confidence 78999999999999999999997 66788988763 2455554422 123666665431 001110
Q ss_pred HhCCchhhhhCCCCCccccccCCCCC--CHHHHHHHHHHH------hhccCCCeeeeeCCCCCcCHHHHHHHHHHHHh--
Q 037346 458 ACSLKKDLEVLPFGDQTIIGERGINL--SGGQKQRIQIAR------PLYQDADIFLLDDPFSPVDDHTGAHLFKFCWV-- 527 (1156)
Q Consensus 458 ~~~l~~~~~~~~~g~~t~v~~~g~~L--SgGqkqRi~lAr------al~~~~~illlDep~s~lD~~~~~~i~~~~~~-- 527 (1156)
.+....++.. .+.. .. +....+ |+||+|++.++. +++.+++...+|+ ++|+..... ++.+..
T Consensus 72 -~~~~~ild~~-~~~~-~~-~~~~~~~~s~g~~~~~~~i~L~~~~e~l~~R~~~r~~d~---~ld~~~~~~-~~~~~~~~ 143 (189)
T 2bdt_A 72 -AQNDVVLDYI-AFPD-EA-EALAQTVQAKVDDVEIRFIILWTNREELLRRDALRKKDE---QMGERCLEL-VEEFESKG 143 (189)
T ss_dssp -TTCEEEEESC-CCHH-HH-HHHHHHHHHHCSSEEEEEEEEECCHHHHHHHTTTSCC-------CGGGGHH-HHHHHHTT
T ss_pred -cCCcEEEeec-cCHH-HH-HHHHHHHHhcccCCCeEEEEEeCCHHHHHHHHHhccccc---cCCHHHHHH-HHHHhhcC
Confidence 1100001100 0000 00 111234 889988988888 8888998888884 789877666 554433
Q ss_pred cCCCEEEEEccC-CCcccc-CCEEEEEeCCeEEEccChHHH
Q 037346 528 SSSKTVIYATHQ-VEFLPA-ADLILVIKDGKITQAGKYSDI 566 (1156)
Q Consensus 528 ~~~~tvi~vtH~-~~~~~~-~d~i~~l~~G~i~~~g~~~~l 566 (1156)
..+.++|.+||. ++.+.. ||+|+ ++|+++..|+++-+
T Consensus 144 ~~~~~ii~tsh~~~~~~e~~~~~i~--~~g~~~~~~~~~~~ 182 (189)
T 2bdt_A 144 IDERYFYNTSHLQPTNLNDIVKNLK--TNPRFIFCMAGDPL 182 (189)
T ss_dssp CCTTSEEECSSSCGGGHHHHHHHHH--HCGGGSCC------
T ss_pred CCccEEEeCCCCChhhHHHHHHHHh--hCCcEEEeecCCch
Confidence 346799999998 888865 99998 99999999987655
|
| >3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B* | Back alignment and structure |
|---|
Probab=99.17 E-value=4.9e-11 Score=138.28 Aligned_cols=74 Identities=31% Similarity=0.419 Sum_probs=64.5
Q ss_pred CCCCCHHHHHHH------HHHHhhccC-CCeeeeeCCCCCcCHHHHHHHHHHHHhc-CCCEEEEEccCCCccccCCEEEE
Q 037346 480 GINLSGGQKQRI------QIARPLYQD-ADIFLLDDPFSPVDDHTGAHLFKFCWVS-SSKTVIYATHQVEFLPAADLILV 551 (1156)
Q Consensus 480 g~~LSgGqkqRi------~lAral~~~-~~illlDep~s~lD~~~~~~i~~~~~~~-~~~tvi~vtH~~~~~~~~d~i~~ 551 (1156)
...||||||||+ ++|||+..+ |+++||||||++||+..+..+.+.+... .+.+||++||+++....||++++
T Consensus 278 ~~~lS~G~~~~~~lal~la~a~~l~~~~~~~lllDEp~~~LD~~~~~~l~~~l~~~~~~~~vi~~th~~~~~~~~d~~~~ 357 (371)
T 3auy_A 278 IDNLSGGEQIAVALSLRLAIANALIGNRVECIILDEPTVYLDENRRAKLAEIFRKVKSIPQMIIITHHRELEDVADVIIN 357 (371)
T ss_dssp GGGSCHHHHHHHHHHHHHHHHHHHHSSCCSEEEEESTTTTCCHHHHHHHHHHHHHCCSCSEEEEEESCGGGGGGCSEEEE
T ss_pred hHhcCHHHHHHHHHHHHHHHHHHHhcCCCCeEEEeCCCCcCCHHHHHHHHHHHHHhccCCeEEEEEChHHHHhhCCEEEE
Confidence 368999999988 567999999 9999999999999999999998876543 35699999999886567999999
Q ss_pred Ee
Q 037346 552 IK 553 (1156)
Q Consensus 552 l~ 553 (1156)
|+
T Consensus 358 l~ 359 (371)
T 3auy_A 358 VK 359 (371)
T ss_dssp EE
T ss_pred EE
Confidence 97
|
| >1wb9_A DNA mismatch repair protein MUTS; DNA-binding, ATP-binding, DNA binding, DNA repair, mismatch recognition; HET: DNA ADP; 2.10A {Escherichia coli} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1wbb_A* 1e3m_A* 1oh5_A* 1oh6_A* 1oh7_A* 1oh8_A* 1w7a_A* 2wtu_A* 1wbd_A* 1ng9_A* 3k0s_A* | Back alignment and structure |
|---|
Probab=99.15 E-value=6.9e-12 Score=157.42 Aligned_cols=150 Identities=11% Similarity=0.053 Sum_probs=94.5
Q ss_pred eEEEEEEEEEEcCCCCceeeCCCCCCHHHHHHHHhhcccC-CCceEEEcCeeCCCCChHHHhhcCeeeccccccccc-cc
Q 037346 947 EVNIRHLQVRYAPNLPLVLRGRTGSGKSTLIQTLFRIVES-TAGHILIDGKDISLIGLHDLRTRLSIIPQDPTMFEG-TT 1024 (1156)
Q Consensus 947 ~I~~~~Vsf~Y~~~~~~vL~G~SGsGKSTL~~lL~rl~~p-~~G~I~idG~di~~i~~~~LR~~i~~VpQdp~LF~g-TI 1024 (1156)
...++|+++. +++.-.+|.|||||||||+++++.|+.-+ +.|. .+ +. -+..+++++| +|.. ++
T Consensus 595 ~~vlndisl~-~~g~i~~ItGpNGsGKSTlLr~iagl~~~~q~G~------~v---pa--~~~~i~~~~~---i~~~~~~ 659 (800)
T 1wb9_A 595 PFIANPLNLS-PQRRMLIITGPNMGGKSTYMRQTALIALMAYIGS------YV---PA--QKVEIGPIDR---IFTRVGA 659 (800)
T ss_dssp CCCCEEEEEC-SSSCEEEEECCTTSSHHHHHHHHHHHHHHHTTTC------CB---SS--SEEEECCCCE---EEEEEC-
T ss_pred ceeeeccccc-CCCcEEEEECCCCCChHHHHHHHHHHHHHHhcCc------cc---ch--hcccceeHHH---HHhhCCH
Confidence 4568999999 77777889999999999999999998532 2231 11 11 1345777776 4443 66
Q ss_pred hhccCCCCCCCHHHHHHHHHHcCCChHHHhhcCCccccccccccCCCEEEEecCCcCCCHHHHHHH-HHHHHHhc--CCc
Q 037346 1025 RSNLDPLEEHADEQIWEALDKCQLGDEVRKKKGKLDSQGRVLLKKSKVLVLDEATASVDTATDNQI-QQTLRQHF--SDC 1101 (1156)
Q Consensus 1025 r~Nl~~~~~~~deei~~al~~~~l~~~i~~lp~gl~s~ARALLr~~~ILiLDEaTS~LD~~te~~I-~~~l~~~~--~~~ 1101 (1156)
.+|+......-..++.+... +...+.+|++|||||||+++|+.....+ .+.++.+. .++
T Consensus 660 ~d~l~~~~stf~~e~~~~~~------------------il~~a~~psLlLLDEp~~Gtd~~d~~~i~~~ll~~l~~~~g~ 721 (800)
T 1wb9_A 660 ADDLASGRSTFMVEMTETAN------------------ILHNATEYSLVLMDEIGRGTSTYDGLSLAWACAENLANKIKA 721 (800)
T ss_dssp ----------CHHHHHHHHH------------------HHHHCCTTEEEEEESCCCCSSSSHHHHHHHHHHHHHHHTTCC
T ss_pred HHHHHhhhhhhhHHHHHHHH------------------HHHhccCCCEEEEECCCCCCChhHHHHHHHHHHHHHHhccCC
Confidence 77765321111111111110 1113679999999999888888655443 55555543 389
Q ss_pred eEEEeecCcccccccCEEEEEeCcEEee
Q 037346 1102 TVVTIAHRITSVLDSAMVLLLNHGLIKE 1129 (1156)
Q Consensus 1102 TvI~IaHrl~ti~~~D~I~Vl~~G~IvE 1129 (1156)
|+|++||..+...-||++..+.+|++..
T Consensus 722 ~vl~~TH~~el~~l~d~~~~v~n~~~~~ 749 (800)
T 1wb9_A 722 LTLFATHYFELTQLPEKMEGVANVHLDA 749 (800)
T ss_dssp EEEEECSCGGGGGHHHHSTTEEEEEEEE
T ss_pred eEEEEeCCHHHHHHhhhhhceEEEEEEE
Confidence 9999999998888888877777777654
|
| >1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=99.15 E-value=2.3e-12 Score=136.87 Aligned_cols=151 Identities=20% Similarity=0.228 Sum_probs=89.4
Q ss_pred EEEEEEEEEEcC----------CCCceeeCCCCCCHHHHHHHHhhcc-----cCCCceEEE-------cCeeCC---CCC
Q 037346 948 VNIRHLQVRYAP----------NLPLVLRGRTGSGKSTLIQTLFRIV-----ESTAGHILI-------DGKDIS---LIG 1002 (1156)
Q Consensus 948 I~~~~Vsf~Y~~----------~~~~vL~G~SGsGKSTL~~lL~rl~-----~p~~G~I~i-------dG~di~---~i~ 1002 (1156)
++++|++|+|+. +..++|.|++|||||||++.|.|.. .|+.|.+.+ ++..+- .+.
T Consensus 4 l~~~~~~~~~~~~~l~~~~~~~~~~v~lvG~~g~GKSTLl~~l~g~~~~~~~~~~~G~~~~~~~~~~~~~~~l~Dt~G~~ 83 (210)
T 1pui_A 4 LNYQQTHFVMSAPDIRHLPSDTGIEVAFAGRSNAGKSSALNTLTNQKSLARTSKTPGRTQLINLFEVADGKRLVDLPGYG 83 (210)
T ss_dssp -------CEEEESSGGGSSCSCSEEEEEEECTTSSHHHHHTTTCCC-------------CCEEEEEEETTEEEEECCCCC
T ss_pred hhhhhhhheeecCCHhHCCCCCCcEEEEECCCCCCHHHHHHHHhCCCccccccCCCccceeeEEEEecCCEEEEECcCCc
Confidence 678888888841 2235677999999999999999998 888888765 233332 211
Q ss_pred --------hHHHhhcCeeeccccccccc-cchhccCCCCCCCHHHHHHHHHHcCCChHH-HhhcCCcc--------cccc
Q 037346 1003 --------LHDLRTRLSIIPQDPTMFEG-TTRSNLDPLEEHADEQIWEALDKCQLGDEV-RKKKGKLD--------SQGR 1064 (1156)
Q Consensus 1003 --------~~~LR~~i~~VpQdp~LF~g-TIr~Nl~~~~~~~deei~~al~~~~l~~~i-~~lp~gl~--------s~AR 1064 (1156)
.+.+|+.++.+.|++..+++ ++..++.......++++.+.++..++...+ .+..+.+. ..+|
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~~~~~~~v~nK~D~~s~~~~~~~~~~~~ 163 (210)
T 1pui_A 84 YAEVPEEMKRKWQRALGEYLEKRQSLQGLVVLMDIRHPLKDLDQQMIEWAVDSNIAVLVLLTKADKLASGARKAQLNMVR 163 (210)
T ss_dssp ------CCHHHHHHHHHHHHHHCTTEEEEEEEEETTSCCCHHHHHHHHHHHHTTCCEEEEEECGGGSCHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHHHHHHHhhhcccEEEEEEECCCCCchhHHHHHHHHHHcCCCeEEEEecccCCCchhHHHHHHHHH
Confidence 13466667777776544444 444555432222245677777777765432 22222222 2368
Q ss_pred ccccCCCEEEEecCCcCCCHHHHHHHHHHHHHhc
Q 037346 1065 VLLKKSKVLVLDEATASVDTATDNQIQQTLRQHF 1098 (1156)
Q Consensus 1065 ALLr~~~ILiLDEaTS~LD~~te~~I~~~l~~~~ 1098 (1156)
+++++|+++++|||||++|.+....+.+.|.+..
T Consensus 164 ~~~~~~~~~~~~~~~Sal~~~~~~~l~~~l~~~~ 197 (210)
T 1pui_A 164 EAVLAFNGDVQVETFSSLKKQGVDKLRQKLDTWF 197 (210)
T ss_dssp HHHGGGCSCEEEEECBTTTTBSHHHHHHHHHHHH
T ss_pred HHHHhcCCCCceEEEeecCCCCHHHHHHHHHHHH
Confidence 8889999999999999999999999999988764
|
| >1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11 | Back alignment and structure |
|---|
Probab=99.14 E-value=3.4e-11 Score=130.83 Aligned_cols=143 Identities=14% Similarity=0.188 Sum_probs=80.0
Q ss_pred EeeCCeEEEEEcCCCCChHHHHHHHhC--CCCC-----CCcEEEEcCeEEEEecCCcCCCccHHHHhhcCCCCCHHHHHH
Q 037346 382 KVFHGMRVAVCGTVGSGKSSCLSCILG--GVPK-----ESGIIRLCGTKAYVAQSPWIQSGKIEENILFGKEMDRERYER 454 (1156)
Q Consensus 382 ~i~~g~~~~ivG~~GsGKSTll~~i~g--~~~~-----~~G~i~~~g~~~~v~Q~~~~~~~ti~eni~~~~~~~~~~~~~ 454 (1156)
-+++|++++|+||||||||||++.|++ ..++ ..|.+++++ +..+ +.++..+
T Consensus 20 gi~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~g~~~~~~~~i~~-------~~~~---------------~~~~~~~ 77 (243)
T 1n0w_A 20 GIETGSITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDT-------EGTF---------------RPERLLA 77 (243)
T ss_dssp SEETTSEEEEECCTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEES-------SSCC---------------CHHHHHH
T ss_pred CCcCCeEEEEECCCCCcHHHHHHHHHHHHhCchhcCCCCCeEEEEEC-------CCCc---------------CHHHHHH
Confidence 489999999999999999999999999 4555 345555543 2211 1122222
Q ss_pred HHHHhCCchh--hhhCCCCCccccccCCCCCCHHHHH-HHHHHHhhc--cCCCeeeeeCCCCCcCHH-------HH----
Q 037346 455 VLEACSLKKD--LEVLPFGDQTIIGERGINLSGGQKQ-RIQIARPLY--QDADIFLLDDPFSPVDDH-------TG---- 518 (1156)
Q Consensus 455 ~~~~~~l~~~--~~~~~~g~~t~v~~~g~~LSgGqkq-Ri~lAral~--~~~~illlDep~s~lD~~-------~~---- 518 (1156)
..+..+.... ++.+ .+ ....++.+.. .+.-++.++ .+|+++++|||++.+|+. ..
T Consensus 78 ~~~~~g~~~~~~~~~~------~~---~~~~~~~~~~~~~~~~~~~~~~~~~~lliiD~~~~~~~~~~~~~~~~~~r~~~ 148 (243)
T 1n0w_A 78 VAERYGLSGSDVLDNV------AY---ARAFNTDHQTQLLYQASAMMVESRYALLIVDSATALYRTDYSGRGELSARQMH 148 (243)
T ss_dssp HHHHTTCCHHHHHHTE------EE---EECCSHHHHHHHHHHHHHHHHHSCEEEEEEETSSGGGC-------CHHHHHHH
T ss_pred HHHHcCCCHHHHhhCe------EE---EecCCHHHHHHHHHHHHHHHhcCCceEEEEeCchHHHHHHhcCCccHHHHHHH
Confidence 2222222110 0100 00 0124455433 233333333 589999999999999985 31
Q ss_pred -HHHHHHHHh---cCCCEEEEEccCCCc-------------------cc-cCCEEEEEeCC
Q 037346 519 -AHLFKFCWV---SSSKTVIYATHQVEF-------------------LP-AADLILVIKDG 555 (1156)
Q Consensus 519 -~~i~~~~~~---~~~~tvi~vtH~~~~-------------------~~-~~d~i~~l~~G 555 (1156)
..++..+.. ..|.|||+++|.... +. .||.+++|++|
T Consensus 149 ~~~~~~~l~~~~~~~~~tvi~~~h~~~~~~~~~~~~~~~~~~~g~~~~~~~~d~vi~l~~~ 209 (243)
T 1n0w_A 149 LARFLRMLLRLADEFGVAVVITNQVVAQVDGAAMFAADPKKPIGGNIIAHASTTRLYLRKG 209 (243)
T ss_dssp HHHHHHHHHHHHHHHCCEEEEEC-------------------------CCTTCEEEEEEEC
T ss_pred HHHHHHHHHHHHHHcCCEEEEEeeeeecCCCccccCCCcccCCccChhhhcCcEEEEEEEc
Confidence 223333322 348999999996542 22 48999999865
|
| >1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1 | Back alignment and structure |
|---|
Probab=99.13 E-value=2e-12 Score=146.57 Aligned_cols=141 Identities=16% Similarity=0.080 Sum_probs=89.8
Q ss_pred eEEEEEcCCCCChHHHHHHHhCCC--------CCCCcEEEEcCeE----------------------------EEE---e
Q 037346 387 MRVAVCGTVGSGKSSCLSCILGGV--------PKESGIIRLCGTK----------------------------AYV---A 427 (1156)
Q Consensus 387 ~~~~ivG~~GsGKSTll~~i~g~~--------~~~~G~i~~~g~~----------------------------~~v---~ 427 (1156)
++++|+|+||||||||++.|+|.. .|+.|+|.++|.. +++ +
T Consensus 5 ~v~~i~G~~GaGKTTll~~l~~~~~~~~~aVi~~d~G~i~idg~~l~~~~~~~~el~~gCicc~~~~~~~~~l~~l~~~~ 84 (318)
T 1nij_A 5 AVTLLTGFLGAGKTTLLRHILNEQHGYKIAVIENEFGEVSVDDQLIGDRATQIKTLTNGCICCSRSNELEDALLDLLDNL 84 (318)
T ss_dssp EEEEEEESSSSSCHHHHHHHHHSCCCCCEEEECSSCCSCCEEEEEECTTSCEEEEETTSCEEECTTSCHHHHHHHHHHHH
T ss_pred cEEEEEecCCCCHHHHHHHHHhhcCCCcEEEEEecCcccCccHHHHhCCCCCEEEECCCceEEcccHHHHHHHHHHHhHH
Confidence 589999999999999999999997 7899999887632 234 4
Q ss_pred cCCc-CCCccHHHHhhcCCCCCH-HHH---HHHHHHhCCchhhhhCCCCCccccccCCCCCCHHHHHHHHHHHhhccCCC
Q 037346 428 QSPW-IQSGKIEENILFGKEMDR-ERY---ERVLEACSLKKDLEVLPFGDQTIIGERGINLSGGQKQRIQIARPLYQDAD 502 (1156)
Q Consensus 428 Q~~~-~~~~ti~eni~~~~~~~~-~~~---~~~~~~~~l~~~~~~~~~g~~t~v~~~g~~LSgGqkqRi~lAral~~~~~ 502 (1156)
|++. .+..++.||..++.+..- ..+ ...-+...+...+..... ... -+...+|||||+||+..+++++.+||
T Consensus 85 q~~~~~~~~~v~E~~~l~~p~~~~~~~~~~~~~~~~~~l~~~l~~vd~--~~~-~~~~~~ls~g~~Q~~~ad~ill~k~d 161 (318)
T 1nij_A 85 DKGNIQFDRLVIECTGMADPGPIIQTFFSHEVLCQRYLLDGVIALVDA--VHA-DEQMNQFTIAQSQVGYADRILLTKTD 161 (318)
T ss_dssp HHTSCCCSEEEEEEETTCCHHHHHHHHHHSHHHHHHEEEEEEEEEEET--TTH-HHHHHHCHHHHHHHHTCSEEEEECTT
T ss_pred hcCCCCCCEEEEeCCCCCCHHHHHHHHhcCccccCeEEECCEEEEEEH--HHH-HHHHhhchHHHHHHHhCCEEEEECcc
Confidence 6654 356688888877643110 111 111112222211111000 000 01112689999999999999999999
Q ss_pred eeeeeCCCCCcCHHHHHHHHHHHHh-cCCCEEEEEccCCC
Q 037346 503 IFLLDDPFSPVDDHTGAHLFKFCWV-SSSKTVIYATHQVE 541 (1156)
Q Consensus 503 illlDep~s~lD~~~~~~i~~~~~~-~~~~tvi~vtH~~~ 541 (1156)
++ ||| +.+.+.+.. ..+.|++++||+..
T Consensus 162 l~--de~---------~~l~~~l~~l~~~~~ii~~sh~~~ 190 (318)
T 1nij_A 162 VA--GEA---------EKLHERLARINARAPVYTVTHGDI 190 (318)
T ss_dssp TC--SCT---------HHHHHHHHHHCSSSCEEECCSSCC
T ss_pred cC--CHH---------HHHHHHHHHhCCCCeEEEecccCC
Confidence 87 999 233333322 35789999999743
|
| >1f2t_B RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_B* 1us8_B* | Back alignment and structure |
|---|
Probab=99.09 E-value=1.5e-10 Score=115.13 Aligned_cols=64 Identities=17% Similarity=0.228 Sum_probs=57.3
Q ss_pred ccccccCCCEEEEecCCcCCCHHHHHHHHHHHHHhc-CCceEEEeecCcccccccCEEEEE--eCcE
Q 037346 1063 GRVLLKKSKVLVLDEATASVDTATDNQIQQTLRQHF-SDCTVVTIAHRITSVLDSAMVLLL--NHGL 1126 (1156)
Q Consensus 1063 ARALLr~~~ILiLDEaTS~LD~~te~~I~~~l~~~~-~~~TvI~IaHrl~ti~~~D~I~Vl--~~G~ 1126 (1156)
||||+++|++|||||||++||+++...+.+.|++.. +++|+|+|||++.....||+|++| ++|.
T Consensus 75 aral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tiiivsH~~~~~~~~d~ii~l~~~~g~ 141 (148)
T 1f2t_B 75 SLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLKKIPQVILVSHDEELKDAADHVIRISLENGS 141 (148)
T ss_dssp HHHHHSSCSEEEEESCSCTTCHHHHHHHHHHHHHTGGGSSEEEEEESCGGGGGGCSEEEEEEEETTE
T ss_pred HHHHcCCCCEEEEECCCccCCHHHHHHHHHHHHHHHccCCEEEEEEChHHHHHhCCEEEEEEcCCCe
Confidence 589999999999999999999999999999999864 478999999999777779999999 4554
|
| >2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A | Back alignment and structure |
|---|
Probab=99.09 E-value=2.6e-12 Score=140.31 Aligned_cols=134 Identities=16% Similarity=0.163 Sum_probs=85.3
Q ss_pred CCeEEEEEcCCCCChHHHHHHHh---CCCCCCCcEEEEcCe---------EEEEecCCcCC-CccHHHHhhc--------
Q 037346 385 HGMRVAVCGTVGSGKSSCLSCIL---GGVPKESGIIRLCGT---------KAYVAQSPWIQ-SGKIEENILF-------- 443 (1156)
Q Consensus 385 ~g~~~~ivG~~GsGKSTll~~i~---g~~~~~~G~i~~~g~---------~~~v~Q~~~~~-~~ti~eni~~-------- 443 (1156)
++++++|+||||||||||++.|+ |...++.|++.++|. +.+++|++.++ ..++.+|+..
T Consensus 26 ~~~~i~l~G~~GsGKSTl~k~La~~lg~~~~~~G~i~~~~~~~~~~~~~~i~~~~~~~~~~~~~~v~~~l~~~l~~~~~~ 105 (246)
T 2bbw_A 26 KLLRAVILGPPGSGKGTVCQRIAQNFGLQHLSSGHFLRENIKASTEVGEMAKQYIEKSLLVPDHVITRLMMSELENRRGQ 105 (246)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHHCCCCEEHHHHHHHHHHTTCHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTCTTS
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHhCCeEecHHHHHHHHHhcCChHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhcCCC
Confidence 47899999999999999999999 999999998877641 23455666544 4588888753
Q ss_pred -----CCCCCHHHHHHHHHHhCCc--hhhhhCCCC-CccccccCCCCCCHHHHHHHHHHHhh-ccCCCeeeee----CCC
Q 037346 444 -----GKEMDRERYERVLEACSLK--KDLEVLPFG-DQTIIGERGINLSGGQKQRIQIARPL-YQDADIFLLD----DPF 510 (1156)
Q Consensus 444 -----~~~~~~~~~~~~~~~~~l~--~~~~~~~~g-~~t~v~~~g~~LSgGqkqRi~lAral-~~~~~illlD----ep~ 510 (1156)
|.+...++.+...+..... -.++.-+.. .+...+++...||| |+ ||+ +.+|++++|| |||
T Consensus 106 ~~il~g~~~~~~~~~~l~~~~~~~~vi~L~~~~~~~l~r~~~r~~~~lSg----rv---~al~~~~P~~lllD~~~~EP~ 178 (246)
T 2bbw_A 106 HWLLDGFPRTLGQAEALDKICEVDLVISLNIPFETLKDRLSRRWIHPPSG----RV---YNLDFNPPHVHGIDDVTGEPL 178 (246)
T ss_dssp CEEEESCCCSHHHHHHHHTTCCCCEEEEEECCHHHHHHHHHTEEEETTTT----EE---EETTTSCCSSTTBCTTTCCBC
T ss_pred eEEEECCCCCHHHHHHHHhhcCCCEEEEEECCHHHHHHHHHcCCCcCCCC----Cc---cccccCCCccccccccccccc
Confidence 1111222212111101110 000000000 01112344567999 66 888 9999999999 999
Q ss_pred CCcCHHHHHHHHHHH
Q 037346 511 SPVDDHTGAHLFKFC 525 (1156)
Q Consensus 511 s~lD~~~~~~i~~~~ 525 (1156)
+++|..+.+.+.+.+
T Consensus 179 ~~ld~~~~~~i~~~l 193 (246)
T 2bbw_A 179 VQQEDDKPEAVAARL 193 (246)
T ss_dssp BCCGGGSHHHHHHHH
T ss_pred ccCCCCcHHHHHHHH
Confidence 999998877776554
|
| >1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A* | Back alignment and structure |
|---|
Probab=99.08 E-value=6.4e-13 Score=154.97 Aligned_cols=115 Identities=19% Similarity=0.117 Sum_probs=80.1
Q ss_pred ccccceEEeeCCeEEEEEcCCCCChHHHHHHHhCCCCCCCcEEEEcCe-----------------EEEE---------ec
Q 037346 375 TLRNINLKVFHGMRVAVCGTVGSGKSSCLSCILGGVPKESGIIRLCGT-----------------KAYV---------AQ 428 (1156)
Q Consensus 375 ~l~~i~l~i~~g~~~~ivG~~GsGKSTll~~i~g~~~~~~G~i~~~g~-----------------~~~v---------~Q 428 (1156)
+|+++ + .++|++++|+||||||||||+++|+|+++|++|+|.+.+. +++. .|
T Consensus 158 ~L~~l-~-~~~ggii~I~GpnGSGKTTlL~allg~l~~~~g~I~~~ed~ie~~~~~~~q~~v~~~~g~~f~~~lr~~Lrq 235 (418)
T 1p9r_A 158 NFRRL-I-KRPHGIILVTGPTGSGKSTTLYAGLQELNSSERNILTVEDPIEFDIDGIGQTQVNPRVDMTFARGLRAILRQ 235 (418)
T ss_dssp HHHHH-H-TSSSEEEEEECSTTSCHHHHHHHHHHHHCCTTSCEEEEESSCCSCCSSSEEEECBGGGTBCHHHHHHHHGGG
T ss_pred HHHHH-H-HhcCCeEEEECCCCCCHHHHHHHHHhhcCCCCCEEEEecccchhccCCcceEEEccccCcCHHHHHHHHhcc
Confidence 56666 4 3799999999999999999999999999999999887542 1233 37
Q ss_pred CCcCC--C-----ccHHHHhhcCC----------CCCHHHHHHHHHHhCCchhhhhCCCCCccccccCCCCCCHHHHHHH
Q 037346 429 SPWIQ--S-----GKIEENILFGK----------EMDRERYERVLEACSLKKDLEVLPFGDQTIIGERGINLSGGQKQRI 491 (1156)
Q Consensus 429 ~~~~~--~-----~ti~eni~~~~----------~~~~~~~~~~~~~~~l~~~~~~~~~g~~t~v~~~g~~LSgGqkqRi 491 (1156)
+|.+. . .|+.+++.++. ..+.......+...++.... ...+|||||+||
T Consensus 236 ~pd~i~vgEiRd~et~~~~l~a~~tGhlv~~tlh~~~~~~~i~rL~~lgl~~~~-------------~~~~LSgg~~QR- 301 (418)
T 1p9r_A 236 DPDVVMVGEIRDLETAQIAVQASLTGHLVMSTLHTNTAVGAVTRLRDMGIEPFL-------------ISSSLLGVLAQR- 301 (418)
T ss_dssp CCSEEEESCCCSHHHHHHHHHHHHTTCEEEEEECCSSSHHHHHHHHHHTCCHHH-------------HHHHEEEEEEEE-
T ss_pred CCCeEEEcCcCCHHHHHHHHHHHHhCCCcccccchhhHHHHHHHHHHcCCcHHH-------------HHHHHHHHHHHH-
Confidence 77642 1 37888876521 11112222234445554321 234799999999
Q ss_pred HHHHhhccCCCeeee
Q 037346 492 QIARPLYQDADIFLL 506 (1156)
Q Consensus 492 ~lAral~~~~~illl 506 (1156)
|||+++.+|++..-
T Consensus 302 -LaraL~~~p~~~~~ 315 (418)
T 1p9r_A 302 -LVRTLCPDCKEPYE 315 (418)
T ss_dssp -EEEEECTTTCEEEE
T ss_pred -hhhhhcCCCCccCC
Confidence 99999999998653
|
| >2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A | Back alignment and structure |
|---|
Probab=99.07 E-value=5.7e-11 Score=139.04 Aligned_cols=141 Identities=17% Similarity=0.175 Sum_probs=95.5
Q ss_pred cccceEEeeCCeEEEEEcCCCCChHHHHHHHhCCCCCCCcEEEEcC-------------------eEEEEecCCcCC-Cc
Q 037346 376 LRNINLKVFHGMRVAVCGTVGSGKSSCLSCILGGVPKESGIIRLCG-------------------TKAYVAQSPWIQ-SG 435 (1156)
Q Consensus 376 l~~i~l~i~~g~~~~ivG~~GsGKSTll~~i~g~~~~~~G~i~~~g-------------------~~~~v~Q~~~~~-~~ 435 (1156)
-+++||++++|++++|+|+||||||||++.|+|.+.+++|+|.++| .++|++|++.++ ..
T Consensus 283 ~~~Isl~i~~GeVI~LVGpNGSGKTTLl~~LAgll~~~~G~V~l~g~D~~r~aa~eQL~~~~~r~~I~vV~Q~~~~~p~~ 362 (503)
T 2yhs_A 283 DEPLNVEGKAPFVILMVGVNGVGKTTTIGKLARQFEQQGKSVMLAAGDTFRAAAVEQLQVWGQRNNIPVIAQHTGADSAS 362 (503)
T ss_dssp BCCCCCCSCTTEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEECCCTTCHHHHHHHHHHHHHHTCCEECCSTTCCHHH
T ss_pred CCCceeeccCCeEEEEECCCcccHHHHHHHHHHHhhhcCCeEEEecCcccchhhHHHHHHHHHhcCceEEecccCcCHHH
Confidence 3578999999999999999999999999999999999999999864 157899987654 45
Q ss_pred cHHHHhhcCCCCCHHHHHHHHHHhCCchhhhhCCCCCccccccC--CCCCCHHHHHHHHHHHhhcc-CC-CeeeeeCCCC
Q 037346 436 KIEENILFGKEMDRERYERVLEACSLKKDLEVLPFGDQTIIGER--GINLSGGQKQRIQIARPLYQ-DA-DIFLLDDPFS 511 (1156)
Q Consensus 436 ti~eni~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~t~v~~~--g~~LSgGqkqRi~lAral~~-~~-~illlDep~s 511 (1156)
++++|+.++.. -+.+..+- || .|.. -.+|-.--+|++.++|++.. .| .++|..|+++
T Consensus 363 tV~e~l~~a~~------------~~~DvVLI------DT-aGrl~~~~~lm~EL~kiv~iar~l~~~~P~evLLvLDatt 423 (503)
T 2yhs_A 363 VIFDAIQAAKA------------RNIDVLIA------DT-AGRLQNKSHLMEELKKIVRVMKKLDVEAPHEVMLTIDAST 423 (503)
T ss_dssp HHHHHHHHHHH------------TTCSEEEE------CC-CCSCCCHHHHHHHHHHHHHHHHTTCTTCSSEEEEEEEGGG
T ss_pred HHHHHHHHHHh------------cCCCEEEE------eC-CCccchhhhHHHHHHHHHHHHHHhccCCCCeeEEEecCcc
Confidence 89999876421 00000000 00 0110 01122233588999998754 45 4676777888
Q ss_pred CcCHHHHHHHHHHHHhcCCCEEEEEcc
Q 037346 512 PVDDHTGAHLFKFCWVSSSKTVIYATH 538 (1156)
Q Consensus 512 ~lD~~~~~~i~~~~~~~~~~tvi~vtH 538 (1156)
+.|.....+-|. ..-+.|.|++||
T Consensus 424 Gq~al~~ak~f~---~~~~itgvIlTK 447 (503)
T 2yhs_A 424 GQNAVSQAKLFH---EAVGLTGITLTK 447 (503)
T ss_dssp THHHHHHHHHHH---HHTCCSEEEEEC
T ss_pred cHHHHHHHHHHH---hhcCCCEEEEEc
Confidence 877654322222 234788999999
|
| >2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A* | Back alignment and structure |
|---|
Probab=99.06 E-value=2.1e-12 Score=147.25 Aligned_cols=159 Identities=14% Similarity=0.134 Sum_probs=102.3
Q ss_pred EEEeeeEEEeCCCCCCCccccceEEeeCCeEEEEEcCCCCChHHHHHHHhCCCCCCCcEEEEcC----------------
Q 037346 358 IEIIDGSFSWDFSSPNPTLRNINLKVFHGMRVAVCGTVGSGKSSCLSCILGGVPKESGIIRLCG---------------- 421 (1156)
Q Consensus 358 i~~~~~~f~~~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKSTll~~i~g~~~~~~G~i~~~g---------------- 421 (1156)
++++|+++.|. ...+|+++|+++++|++++|+|+||||||||++.|+|.+.|++|+|.+.|
T Consensus 30 ie~~~~~~~~~---~~~~l~~i~~~~~~g~~v~i~G~~GaGKSTLl~~l~g~~~~~~g~v~i~~~d~~~~~~~~~~~~~~ 106 (337)
T 2qm8_A 30 AESRRADHRAA---VRDLIDAVLPQTGRAIRVGITGVPGVGKSTTIDALGSLLTAAGHKVAVLAVDPSSTRTGGSILGDK 106 (337)
T ss_dssp HTCSSHHHHHH---HHHHHHHHGGGCCCSEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEEECGGGGSSCCCSSCCG
T ss_pred HeeCCcccccC---hHHHHHhCCcccCCCeEEEEECCCCCCHHHHHHHHHHhhhhCCCEEEEEEEcCcccccccchHHHh
Confidence 44556666664 24689999999999999999999999999999999999999999998765
Q ss_pred -eEEEEecCCcCCC----------c---cHHHHhh-c---C----------CCCCHHHHHHHHHHhCCc---------hh
Q 037346 422 -TKAYVAQSPWIQS----------G---KIEENIL-F---G----------KEMDRERYERVLEACSLK---------KD 464 (1156)
Q Consensus 422 -~~~~v~Q~~~~~~----------~---ti~eni~-~---~----------~~~~~~~~~~~~~~~~l~---------~~ 464 (1156)
+++|++|+|.+|. | +++|.+. + + -...+.. +.+.+.+- ++
T Consensus 107 ~~i~~v~q~~~~~~~~~~~~~~l~G~tr~~~e~~~~~~~~~~~~iliDT~Gi~~~~~~---v~~~~d~vl~v~d~~~~~~ 183 (337)
T 2qm8_A 107 TRMARLAIDRNAFIRPSPSSGTLGGVAAKTRETMLLCEAAGFDVILVETVGVGQSETA---VADLTDFFLVLMLPGAGDE 183 (337)
T ss_dssp GGSTTGGGCTTEEEECCCCCSSHHHHHHHHHHHHHHHHHTTCCEEEEEECSSSSCHHH---HHTTSSEEEEEECSCC---
T ss_pred hhheeeccCcccccccCcccccccchHHHHHHHHHHHhcCCCCEEEEECCCCCcchhh---HHhhCCEEEEEEcCCCccc
Confidence 2478888887653 1 2233321 0 1 0001111 11111100 00
Q ss_pred hhhCCCC-----Cc---ccccc-CCCCCCHHHHHHHHHHHhhcc------CCCeeeeeCCCCCcCHHHHHHHHHHHH
Q 037346 465 LEVLPFG-----DQ---TIIGE-RGINLSGGQKQRIQIARPLYQ------DADIFLLDDPFSPVDDHTGAHLFKFCW 526 (1156)
Q Consensus 465 ~~~~~~g-----~~---t~v~~-~g~~LSgGqkqRi~lAral~~------~~~illlDep~s~lD~~~~~~i~~~~~ 526 (1156)
++.+..+ +- +.++. ....+|+|++|++..|++++. +|+++. +||+|......+++.+.
T Consensus 184 ~~~i~~~i~~~~~ivvlNK~Dl~~~~~~s~~~~~~l~~a~~l~~~~~~~~~~~vl~----~Sal~g~gi~~L~~~I~ 256 (337)
T 2qm8_A 184 LQGIKKGIFELADMIAVNKADDGDGERRASAAASEYRAALHILTPPSATWTPPVVT----ISGLHGKGLDSLWSRIE 256 (337)
T ss_dssp ---CCTTHHHHCSEEEEECCSTTCCHHHHHHHHHHHHHHHTTBCCSBTTBCCCEEE----EBTTTTBSHHHHHHHHH
T ss_pred HHHHHHHHhccccEEEEEchhccCchhHHHHHHHHHHHHHHhccccccCCCCCEEE----EeCCCCCCHHHHHHHHH
Confidence 0000000 00 00110 113579999999999999987 688876 99999998888887664
|
| >1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A | Back alignment and structure |
|---|
Probab=99.06 E-value=4.9e-11 Score=132.78 Aligned_cols=146 Identities=14% Similarity=0.116 Sum_probs=90.9
Q ss_pred EcCCCCceeeCCCCCCHHHHHHHHhhcccCCCceEEEcCeeCCCCChHHHhhcCeeeccccccccccchhccC-CCCCCC
Q 037346 957 YAPNLPLVLRGRTGSGKSTLIQTLFRIVESTAGHILIDGKDISLIGLHDLRTRLSIIPQDPTMFEGTTRSNLD-PLEEHA 1035 (1156)
Q Consensus 957 Y~~~~~~vL~G~SGsGKSTL~~lL~rl~~p~~G~I~idG~di~~i~~~~LR~~i~~VpQdp~LF~gTIr~Nl~-~~~~~~ 1035 (1156)
++++..++|.|++|||||||++.+++... .|.+. .|.+... +..+.|++.+... ..+..++. .+....
T Consensus 27 l~~G~i~~i~G~~GsGKTtl~~~l~~~~~--~g~~~-~g~~~~~------~~~v~~~~~e~~~--~~~~~r~~~~g~~~~ 95 (279)
T 1nlf_A 27 MVAGTVGALVSPGGAGKSMLALQLAAQIA--GGPDL-LEVGELP------TGPVIYLPAEDPP--TAIHHRLHALGAHLS 95 (279)
T ss_dssp EETTSEEEEEESTTSSHHHHHHHHHHHHH--TCCCT-TCCCCCC------CCCEEEEESSSCH--HHHHHHHHHHHTTSC
T ss_pred ccCCCEEEEEcCCCCCHHHHHHHHHHHHh--cCCCc-CCCccCC------CccEEEEECCCCH--HHHHHHHHHHHhhcC
Confidence 35677778899999999999999999764 56653 3443321 2345566554432 11212211 111233
Q ss_pred HHHHHHHHHHcCCChHHHhhcCCcccc----ccccccCCCEEEEecCCc--CCCHHHH---HHHHHHHHHhc--CCceEE
Q 037346 1036 DEQIWEALDKCQLGDEVRKKKGKLDSQ----GRVLLKKSKVLVLDEATA--SVDTATD---NQIQQTLRQHF--SDCTVV 1104 (1156)
Q Consensus 1036 deei~~al~~~~l~~~i~~lp~gl~s~----ARALLr~~~ILiLDEaTS--~LD~~te---~~I~~~l~~~~--~~~TvI 1104 (1156)
+++..++++..++.+.....+..++.+ +|+++++|++|||||||+ ++|..+. ..+.+.|.++. .++|||
T Consensus 96 ~~~~~~~~~~l~l~~~~~~~~~~ls~g~~~~i~~l~~~~~livlDe~~~~~~~d~~~~~~~~~~~~~L~~l~~~~g~tvi 175 (279)
T 1nlf_A 96 AEERQAVADGLLIQPLIGSLPNIMAPEWFDGLKRAAEGRRLMVLDTLRRFHIEEENASGPMAQVIGRMEAIAADTGCSIV 175 (279)
T ss_dssp HHHHHHHHHHEEECCCTTSCCCTTSHHHHHHHHHHHTTCSEEEEECGGGGCCSCTTCHHHHHHHHHHHHHHHHHHCCEEE
T ss_pred hhhhhhccCceEEeecCCCCcccCCHHHHHHHHHhcCCCCEEEECCHHHhcCCCcCchHHHHHHHHHHHHHHHHcCCEEE
Confidence 455556677776655433333333222 688899999999999999 8997544 56666776653 389999
Q ss_pred EeecCcccc
Q 037346 1105 TIAHRITSV 1113 (1156)
Q Consensus 1105 ~IaHrl~ti 1113 (1156)
+|+|.....
T Consensus 176 ~i~H~~~~~ 184 (279)
T 1nlf_A 176 FLHHASKGA 184 (279)
T ss_dssp EEEEC----
T ss_pred EEecCCCcc
Confidence 999987654
|
| >2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A* | Back alignment and structure |
|---|
Probab=99.05 E-value=6.2e-11 Score=133.09 Aligned_cols=146 Identities=14% Similarity=0.098 Sum_probs=69.8
Q ss_pred EEEEEEEEEEcCCCCceeeCCCCCCHHHHHHHHhhc-ccCCCceEEEcCeeCCCCChHHHhhcCeeeccccccc-cccch
Q 037346 948 VNIRHLQVRYAPNLPLVLRGRTGSGKSTLIQTLFRI-VESTAGHILIDGKDISLIGLHDLRTRLSIIPQDPTMF-EGTTR 1025 (1156)
Q Consensus 948 I~~~~Vsf~Y~~~~~~vL~G~SGsGKSTL~~lL~rl-~~p~~G~I~idG~di~~i~~~~LR~~i~~VpQdp~LF-~gTIr 1025 (1156)
..+++++|+. +|.|+||+|||||++.|+|. ..|.+| |.++|.++.. +. . ++.+++++|++.++ .-|+.
T Consensus 12 ~~l~~~~~~I------~lvG~nG~GKSTLl~~L~g~~~~~~~g-i~~~g~~~~~-t~-~-~~~~~~~~q~~~~~~~ltv~ 81 (301)
T 2qnr_A 12 SVKKGFEFTL------MVVGESGLGKSTLINSLFLTDLYPERV-ISGAAEKIER-TV-Q-IEASTVEIEERGVKLRLTVV 81 (301)
T ss_dssp ------CEEE------EEEEETTSSHHHHHHHHHC----------------------------CEEEEC---CCEEEEEE
T ss_pred EEEcCCCEEE------EEECCCCCCHHHHHHHHhCCCccCCCC-cccCCcccCC-cc-e-EeeEEEEecCCCcccCcchh
Confidence 3566777654 78899999999999999998 888999 9999988754 22 1 46689999987654 45888
Q ss_pred hccCCCCCCCH-H---HHHHHHHHcCCChHHHhhcCCcc---ccccccccCCCEEEEecCCcC-CCHHHHHHHHHHHHHh
Q 037346 1026 SNLDPLEEHAD-E---QIWEALDKCQLGDEVRKKKGKLD---SQGRVLLKKSKVLVLDEATAS-VDTATDNQIQQTLRQH 1097 (1156)
Q Consensus 1026 ~Nl~~~~~~~d-e---ei~~al~~~~l~~~i~~lp~gl~---s~ARALLr~~~ILiLDEaTS~-LD~~te~~I~~~l~~~ 1097 (1156)
|+...+..... + ++.+.+.. ..+.++..+.+|.- ..|||+. +|++||||++ ||+... +.+++.
T Consensus 82 Dt~g~~~~~~~~e~~~~l~~~l~~-~~~~~~~~~sgg~rqrv~~ara~~----ll~ldePt~~~Ld~~~~----~~l~~l 152 (301)
T 2qnr_A 82 DTPGYGDAINCRDCFKTIISYIDE-QFERYLHDESGLNRRHIIDNRVHC----CFYFISPFGHGLKPLDV----AFMKAI 152 (301)
T ss_dssp EEC-----------CTTHHHHHHH-HHHHHHHHHTSSCCTTCCCCCCCE----EEEEECSSSSSCCHHHH----HHHHHH
T ss_pred hhhhhhhhcCcHHHHHHHHHHHHH-HHHHHHHHhCHHhhhhhhhhhhhh----eeeeecCcccCCCHHHH----HHHHHH
Confidence 88765322111 1 12221111 01233444443332 2256654 9999999985 999874 333333
Q ss_pred c--CCceEEEeecCccc
Q 037346 1098 F--SDCTVVTIAHRITS 1112 (1156)
Q Consensus 1098 ~--~~~TvI~IaHrl~t 1112 (1156)
. .+.++|+..|++.+
T Consensus 153 ~~~~~iilV~~K~Dl~~ 169 (301)
T 2qnr_A 153 HNKVNIVPVIAKADTLT 169 (301)
T ss_dssp TTTSCEEEEECCGGGSC
T ss_pred HhcCCEEEEEEeCCCCC
Confidence 2 25678888899854
|
| >1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1 | Back alignment and structure |
|---|
Probab=99.05 E-value=9e-12 Score=141.21 Aligned_cols=134 Identities=19% Similarity=0.235 Sum_probs=96.1
Q ss_pred ceeeCCCCCCHHHHHHHHhhcc--------cCCCceEEEcCeeCCCCC---------------hHHHhhcCeee---ccc
Q 037346 963 LVLRGRTGSGKSTLIQTLFRIV--------ESTAGHILIDGKDISLIG---------------LHDLRTRLSII---PQD 1016 (1156)
Q Consensus 963 ~vL~G~SGsGKSTL~~lL~rl~--------~p~~G~I~idG~di~~i~---------------~~~LR~~i~~V---pQd 1016 (1156)
++|.|++|||||||++.|+|+. .|+.|+|.|||.++...+ ..++++.++++ +|+
T Consensus 7 ~~i~G~~GaGKTTll~~l~~~~~~~~~aVi~~d~G~i~idg~~l~~~~~~~~el~~gCicc~~~~~~~~~l~~l~~~~q~ 86 (318)
T 1nij_A 7 TLLTGFLGAGKTTLLRHILNEQHGYKIAVIENEFGEVSVDDQLIGDRATQIKTLTNGCICCSRSNELEDALLDLLDNLDK 86 (318)
T ss_dssp EEEEESSSSSCHHHHHHHHHSCCCCCEEEECSSCCSCCEEEEEECTTSCEEEEETTSCEEECTTSCHHHHHHHHHHHHHH
T ss_pred EEEEecCCCCHHHHHHHHHhhcCCCcEEEEEecCcccCccHHHHhCCCCCEEEECCCceEEcccHHHHHHHHHHHhHHhc
Confidence 4678999999999999999998 789999999999998764 45788889988 788
Q ss_pred cc-cccccchhccCCCCCCCHHHHHH----------------HHHHcCCChHHHhhc---CCcc---ccccccccCCCEE
Q 037346 1017 PT-MFEGTTRSNLDPLEEHADEQIWE----------------ALDKCQLGDEVRKKK---GKLD---SQGRVLLKKSKVL 1073 (1156)
Q Consensus 1017 p~-LF~gTIr~Nl~~~~~~~deei~~----------------al~~~~l~~~i~~lp---~gl~---s~ARALLr~~~IL 1073 (1156)
+. .|+.++.||...+.+ ..+.+ ++..+++.++...++ .|.. ..+|+++.+|+++
T Consensus 87 ~~~~~~~~v~E~~~l~~p---~~~~~~~~~~~~~~~~~~l~~~l~~vd~~~~~~~~~~ls~g~~Q~~~ad~ill~k~dl~ 163 (318)
T 1nij_A 87 GNIQFDRLVIECTGMADP---GPIIQTFFSHEVLCQRYLLDGVIALVDAVHADEQMNQFTIAQSQVGYADRILLTKTDVA 163 (318)
T ss_dssp TSCCCSEEEEEEETTCCH---HHHHHHHHHSHHHHHHEEEEEEEEEEETTTHHHHHHHCHHHHHHHHTCSEEEEECTTTC
T ss_pred CCCCCCEEEEeCCCCCCH---HHHHHHHhcCccccCeEEECCEEEEEEHHHHHHHHhhchHHHHHHHhCCEEEEECcccC
Confidence 76 478899999986542 12211 112233333333332 1110 1146777777766
Q ss_pred EEecCCcCCCHHHHHHHHHHHHHhcCCceEEEeecCc
Q 037346 1074 VLDEATASVDTATDNQIQQTLRQHFSDCTVVTIAHRI 1110 (1156)
Q Consensus 1074 iLDEaTS~LD~~te~~I~~~l~~~~~~~TvI~IaHrl 1110 (1156)
||| +.+.+.|++..++.|+++++|+.
T Consensus 164 --de~---------~~l~~~l~~l~~~~~ii~~sh~~ 189 (318)
T 1nij_A 164 --GEA---------EKLHERLARINARAPVYTVTHGD 189 (318)
T ss_dssp --SCT---------HHHHHHHHHHCSSSCEEECCSSC
T ss_pred --CHH---------HHHHHHHHHhCCCCeEEEecccC
Confidence 777 67788888777789999999974
|
| >3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A* | Back alignment and structure |
|---|
Probab=99.04 E-value=1.1e-10 Score=135.30 Aligned_cols=147 Identities=18% Similarity=0.189 Sum_probs=94.7
Q ss_pred cCCCCceeeCCCCCCHHHHHHH--HhhcccCCC-----ceEEEcCeeC-CCCChHHHhhcCeeeccccccccccchhccC
Q 037346 958 APNLPLVLRGRTGSGKSTLIQT--LFRIVESTA-----GHILIDGKDI-SLIGLHDLRTRLSIIPQDPTMFEGTTRSNLD 1029 (1156)
Q Consensus 958 ~~~~~~vL~G~SGsGKSTL~~l--L~rl~~p~~-----G~I~idG~di-~~i~~~~LR~~i~~VpQdp~LF~gTIr~Nl~ 1029 (1156)
++++-+.|.|++|||||||++. +.+..+++. +.|+||+.+. +...+..+++++++.+| ++.+|+.
T Consensus 176 ~~Gei~~I~G~sGsGKTTLl~~la~~~~~p~~~Gg~~~~viyid~E~~~~~~rl~~~a~~~gl~~~-------~vleni~ 248 (400)
T 3lda_A 176 ETGSITELFGEFRTGKSQLCHTLAVTCQIPLDIGGGEGKCLYIDTEGTFRPVRLVSIAQRFGLDPD-------DALNNVA 248 (400)
T ss_dssp ETTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCHHHHHHHHHHTTCCHH-------HHHHTEE
T ss_pred CCCcEEEEEcCCCCChHHHHHHHHHHhccCcccCCCCCcEEEEeCCCccCHHHHHHHHHHcCCChH-------hHhhcEE
Confidence 3566678889999999999994 456666544 4899999873 22334456678888877 5667776
Q ss_pred CCCCCCHHHHHHHHHHcCCChHHHhhcCCccccccccccCCCEEEEecCCcCCCHHHH------------HHHHHHHHHh
Q 037346 1030 PLEEHADEQIWEALDKCQLGDEVRKKKGKLDSQGRVLLKKSKVLVLDEATASVDTATD------------NQIQQTLRQH 1097 (1156)
Q Consensus 1030 ~~~~~~deei~~al~~~~l~~~i~~lp~gl~s~ARALLr~~~ILiLDEaTS~LD~~te------------~~I~~~l~~~ 1097 (1156)
+.....-++..+.++++ .+.+. -.+|+++++||+|+.+|.+.. ..+.+.|+++
T Consensus 249 ~~~~~~~~~~~~~l~~~--~~~l~-------------~~~~~llVIDs~t~~~~~~~sg~g~l~~Rq~~l~~il~~L~~l 313 (400)
T 3lda_A 249 YARAYNADHQLRLLDAA--AQMMS-------------ESRFSLIVVDSVMALYRTDFSGRGELSARQMHLAKFMRALQRL 313 (400)
T ss_dssp EEECCSHHHHHHHHHHH--HHHHH-------------HSCEEEEEEETGGGGCC------CCHHHHHHHHHHHHHHHHHH
T ss_pred EeccCChHHHHHHHHHH--HHHHH-------------hcCCceEEecchhhhCchhhcCccchHHHHHHHHHHHHHHHHH
Confidence 65555544444433322 01111 136899999999999997643 3455555554
Q ss_pred c--CCceEEEeecCcccc-------------------c-ccCEEEEEeCcE
Q 037346 1098 F--SDCTVVTIAHRITSV-------------------L-DSAMVLLLNHGL 1126 (1156)
Q Consensus 1098 ~--~~~TvI~IaHrl~ti-------------------~-~~D~I~Vl~~G~ 1126 (1156)
. .++|||+|+|-..+. . .+|.+++|++|+
T Consensus 314 ake~gitVIlv~Hv~~~~~g~~~~~g~~~~p~gg~~l~~~ad~vl~L~~~~ 364 (400)
T 3lda_A 314 ADQFGVAVVVTNQVVAQVDGGMAFNPDPKKPIGGNIMAYSSTTRLGFKKGK 364 (400)
T ss_dssp HHHHCCEEEEEEEC--------------------CHHHHHCSEEEEEEECS
T ss_pred HHHcCCEEEEEEeecccCCccccccCCCccCCchhHHHHhcceEEEEEecC
Confidence 3 389999999983222 2 379999998764
|
| >3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B* | Back alignment and structure |
|---|
Probab=99.04 E-value=6.2e-12 Score=142.17 Aligned_cols=160 Identities=15% Similarity=0.165 Sum_probs=100.1
Q ss_pred CCceeeCCCCCCHHHHHHHHhhcccCCCceEEEcCeeCCCCCh----HHHhhcCe--eecccccccc-ccchhccCCCCC
Q 037346 961 LPLVLRGRTGSGKSTLIQTLFRIVESTAGHILIDGKDISLIGL----HDLRTRLS--IIPQDPTMFE-GTTRSNLDPLEE 1033 (1156)
Q Consensus 961 ~~~vL~G~SGsGKSTL~~lL~rl~~p~~G~I~idG~di~~i~~----~~LR~~i~--~VpQdp~LF~-gTIr~Nl~~~~~ 1033 (1156)
..++|.|+|||||||+++.|.|++.|++|+|.++|.|+...+. ..++++++ +++|++.++. .|+++|+.....
T Consensus 130 ~vi~lvG~nGaGKTTll~~Lag~l~~~~g~V~l~g~D~~r~~a~eql~~~~~~~gv~~v~q~~~~~p~~~v~e~l~~~~~ 209 (328)
T 3e70_C 130 YVIMFVGFNGSGKTTTIAKLANWLKNHGFSVVIAASDTFRAGAIEQLEEHAKRIGVKVIKHSYGADPAAVAYDAIQHAKA 209 (328)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEECCSSTTHHHHHHHHHHHTTCEEECCCTTCCHHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHhcCCEEEEEeecccccchHHHHHHHHHHcCceEEeccccCCHHHHHHHHHHHHHh
Confidence 3457889999999999999999999999999999999987763 33455555 8999887764 478888742100
Q ss_pred -CCHHHHHHHHHHcCCChHHHhhcCCccccccccccCCCEEEEecCCcCCCHHHHHHHHHHHHHhcCCceEEEeecCccc
Q 037346 1034 -HADEQIWEALDKCQLGDEVRKKKGKLDSQGRVLLKKSKVLVLDEATASVDTATDNQIQQTLRQHFSDCTVVTIAHRITS 1112 (1156)
Q Consensus 1034 -~~deei~~al~~~~l~~~i~~lp~gl~s~ARALLr~~~ILiLDEaTS~LD~~te~~I~~~l~~~~~~~TvI~IaHrl~t 1112 (1156)
..|- + .++.+|....-..+...+...+|++..++++++||.+|. .|... .+ +.+.+. .+.|+|++||--.+
T Consensus 210 ~~~d~-v--liDtaG~~~~~~~l~~eL~~i~ral~~de~llvLDa~t~-~~~~~--~~-~~~~~~-~~it~iilTKlD~~ 281 (328)
T 3e70_C 210 RGIDV-V--LIDTAGRSETNRNLMDEMKKIARVTKPNLVIFVGDALAG-NAIVE--QA-RQFNEA-VKIDGIILTKLDAD 281 (328)
T ss_dssp HTCSE-E--EEEECCSCCTTTCHHHHHHHHHHHHCCSEEEEEEEGGGT-THHHH--HH-HHHHHH-SCCCEEEEECGGGC
T ss_pred ccchh-h--HHhhccchhHHHHHHHHHHHHHHHhcCCCCEEEEecHHH-HHHHH--HH-HHHHHh-cCCCEEEEeCcCCc
Confidence 0000 0 011122211111111122224788888889999996665 33222 11 222221 37899999995433
Q ss_pred cc----------ccCEEEEEeCcEEe
Q 037346 1113 VL----------DSAMVLLLNHGLIK 1128 (1156)
Q Consensus 1113 i~----------~~D~I~Vl~~G~Iv 1128 (1156)
.. ..-.|..+..|+-+
T Consensus 282 a~~G~~l~~~~~~~~pi~~i~~Ge~v 307 (328)
T 3e70_C 282 ARGGAALSISYVIDAPILFVGVGQGY 307 (328)
T ss_dssp SCCHHHHHHHHHHTCCEEEEECSSST
T ss_pred cchhHHHHHHHHHCCCEEEEeCCCCc
Confidence 21 12368888888765
|
| >2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.03 E-value=2.9e-11 Score=139.97 Aligned_cols=152 Identities=14% Similarity=0.119 Sum_probs=97.7
Q ss_pred EEEEEEEEcCCCC--ceeeCCCCCCHHHHHHHHhhcccCCCceEEEcCeeCCCCChHHHhhcCeeeccccccc-cccchh
Q 037346 950 IRHLQVRYAPNLP--LVLRGRTGSGKSTLIQTLFRIVESTAGHILIDGKDISLIGLHDLRTRLSIIPQDPTMF-EGTTRS 1026 (1156)
Q Consensus 950 ~~~Vsf~Y~~~~~--~vL~G~SGsGKSTL~~lL~rl~~p~~G~I~idG~di~~i~~~~LR~~i~~VpQdp~LF-~gTIr~ 1026 (1156)
+++|+|..++|.. ++|.||||||||||+++|+|+. ++|.++........|+.+++++|++.++ .-|+.|
T Consensus 30 L~~vsl~i~~Gei~~vaLvG~nGaGKSTLln~L~G~~--------l~g~~~~~~~~~~~~~~i~~v~Q~~~l~~~ltv~D 101 (427)
T 2qag_B 30 DQLVNKSVSQGFCFNILCVGETGLGKSTLMDTLFNTK--------FEGEPATHTQPGVQLQSNTYDLQESNVRLKLTIVS 101 (427)
T ss_dssp HHHHHHSCC-CCEEEEEEECSTTSSSHHHHHHHHTSC--------C-------CCSSCEEEEEEEEEEC--CEEEEEEEE
T ss_pred cCCCceEecCCCeeEEEEECCCCCCHHHHHHHHhCcc--------ccCCcCCCCCccceEeeEEEEeecCccccccchhh
Confidence 8889999999988 8999999999999999999993 5666666555555677899999999887 459999
Q ss_pred ccCCCCCCCHH------------HHHHHHHHc-CCChHHHhh-------------c--CCccc----cccccccCCCEEE
Q 037346 1027 NLDPLEEHADE------------QIWEALDKC-QLGDEVRKK-------------K--GKLDS----QGRVLLKKSKVLV 1074 (1156)
Q Consensus 1027 Nl~~~~~~~de------------ei~~al~~~-~l~~~i~~l-------------p--~gl~s----~ARALLr~~~ILi 1074 (1156)
|+.++.....+ +..+.+... ++..-+... | .++.. .+|+|-.+++|++
T Consensus 102 ~~~~g~~~~~~~~~~~i~~~i~~q~~~~L~e~~~i~r~l~~~~d~rVh~~v~fI~d~~~~l~~~Dieilk~L~~~~~vI~ 181 (427)
T 2qag_B 102 TVGFGDQINKEDSYKPIVEFIDAQFEAYLQEELKIRRVLHTYHDSRIHVCLYFIAPTGHSLKSLDLVTMKKLDSKVNIIP 181 (427)
T ss_dssp EECCCC-CCHHHHSHHHHHHHHHHHHHHHHHC--CCCCCCCSCC--CCEEEEEECCCC---CHHHHHHHHHTCSCSEEEE
T ss_pred hhhhhhccccchhhhHHHHHHHHHHHHHHHHHHhhhhhhcccccccccEEEEEEeCCCCCCCHHHHHHHHHHhhCCCEEE
Confidence 99876654432 222334333 222100000 0 11111 1688888999999
Q ss_pred EecCCcCCCHHHHHHHHHHHHH-h-cCCceEEEeecC
Q 037346 1075 LDEATASVDTATDNQIQQTLRQ-H-FSDCTVVTIAHR 1109 (1156)
Q Consensus 1075 LDEaTS~LD~~te~~I~~~l~~-~-~~~~TvI~IaHr 1109 (1156)
+||+|..|.+.--..+.+.|++ + ..|.+++.|+..
T Consensus 182 Vi~KtD~Lt~~E~~~l~~~I~~~L~~~gi~I~~is~~ 218 (427)
T 2qag_B 182 IIAKADAISKSELTKFKIKITSELVSNGVQIYQFPTD 218 (427)
T ss_dssp EESCGGGSCHHHHHHHHHHHHHHHBTTBCCCCCCC--
T ss_pred EEcchhccchHHHHHHHHHHHHHHHHcCCcEEecCCC
Confidence 9999999988766666677765 3 246788888753
|
| >1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1 | Back alignment and structure |
|---|
Probab=99.02 E-value=1.1e-10 Score=135.90 Aligned_cols=145 Identities=20% Similarity=0.189 Sum_probs=89.8
Q ss_pred cccceEEeeCCeEEEEEcCCCCChHHHHHHHhCCC-----------CCCCcEEEEcC-eEEEEecCCcCCCccHHHHhhc
Q 037346 376 LRNINLKVFHGMRVAVCGTVGSGKSSCLSCILGGV-----------PKESGIIRLCG-TKAYVAQSPWIQSGKIEENILF 443 (1156)
Q Consensus 376 l~~i~l~i~~g~~~~ivG~~GsGKSTll~~i~g~~-----------~~~~G~i~~~g-~~~~v~Q~~~~~~~ti~eni~~ 443 (1156)
-++++|+++.|+.++|+|+||||||||+++|+|.. .|+.|.+.+++ ....+.+.|-+..+ ..++.
T Consensus 147 ~~~i~lelk~g~~VgLVG~~gAGKSTLL~~Lsg~~~~i~~~~ftTl~p~~G~V~~~~~~~~~l~DtpGli~~-a~~~~-- 223 (416)
T 1udx_A 147 KRRLRLELMLIADVGLVGYPNAGKSSLLAAMTRAHPKIAPYPFTTLSPNLGVVEVSEEERFTLADIPGIIEG-ASEGK-- 223 (416)
T ss_dssp EEEEEEEECCSCSEEEECCGGGCHHHHHHHHCSSCCEECCCTTCSSCCEEEEEECSSSCEEEEEECCCCCCC-GGGSC--
T ss_pred EeeeeeEEcCCCEEEEECCCCCcHHHHHHHHHcCCccccCcccceecceeeEEEecCcceEEEEeccccccc-hhhhh--
Confidence 47899999999999999999999999999999983 34445555543 33334444433221 11111
Q ss_pred CCCCCHHHHHHHHHHhCCchhhhhCCCCCccccccCCCCCCHHHHHHHHHHHhhccCCCeeeeeCCCCCcCHHHHHHHHH
Q 037346 444 GKEMDRERYERVLEACSLKKDLEVLPFGDQTIIGERGINLSGGQKQRIQIARPLYQDADIFLLDDPFSPVDDHTGAHLFK 523 (1156)
Q Consensus 444 ~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~t~v~~~g~~LSgGqkqRi~lAral~~~~~illlDep~s~lD~~~~~~i~~ 523 (1156)
..... +.+.++.|.. .+..+... .+...+||+||+||+++|++|..+|.++++ +.+|.... ..++
T Consensus 224 --~L~~~-fl~~~era~~--lL~vvDls-----~~~~~~ls~g~~el~~la~aL~~~P~ILVl----NKlDl~~~-~~~~ 288 (416)
T 1udx_A 224 --GLGLE-FLRHIARTRV--LLYVLDAA-----DEPLKTLETLRKEVGAYDPALLRRPSLVAL----NKVDLLEE-EAVK 288 (416)
T ss_dssp --CSCHH-HHHHHTSSSE--EEEEEETT-----SCHHHHHHHHHHHHHHHCHHHHHSCEEEEE----ECCTTSCH-HHHH
T ss_pred --hhhHH-HHHHHHHHHh--hhEEeCCc-----cCCHHHHHHHHHHHHHHhHHhhcCCEEEEE----ECCChhhH-HHHH
Confidence 11122 2222222221 11111000 123357999999999999999999999999 89998655 2333
Q ss_pred HHH---hcCCCEEEEEcc
Q 037346 524 FCW---VSSSKTVIYATH 538 (1156)
Q Consensus 524 ~~~---~~~~~tvi~vtH 538 (1156)
.+. ...+.+++.+|.
T Consensus 289 ~l~~~l~~~g~~vi~iSA 306 (416)
T 1udx_A 289 ALADALAREGLAVLPVSA 306 (416)
T ss_dssp HHHHHHHTTTSCEEECCT
T ss_pred HHHHHHHhcCCeEEEEEC
Confidence 222 234667776664
|
| >3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A* | Back alignment and structure |
|---|
Probab=99.01 E-value=2.3e-10 Score=118.35 Aligned_cols=109 Identities=17% Similarity=0.202 Sum_probs=71.7
Q ss_pred eEEeeCCeEEEEEcCCCCChHHHHHHHhCCCCCCCcEEEEcCeEEEEecCCcCCCccHHHHhhcCCCCCHHHHHHHHHHh
Q 037346 380 NLKVFHGMRVAVCGTVGSGKSSCLSCILGGVPKESGIIRLCGTKAYVAQSPWIQSGKIEENILFGKEMDRERYERVLEAC 459 (1156)
Q Consensus 380 ~l~i~~g~~~~ivG~~GsGKSTll~~i~g~~~~~~G~i~~~g~~~~v~Q~~~~~~~ti~eni~~~~~~~~~~~~~~~~~~ 459 (1156)
++.+++|+.++|+||+|||||||+++|++.+.+..|.. +.|+ +..+.+ +.+.......
T Consensus 32 ~~~~~~g~~~~l~G~~G~GKTtL~~~i~~~~~~~~g~~-----~~~~---------~~~~~~--------~~~~~~~~~~ 89 (180)
T 3ec2_A 32 NFNPEEGKGLTFVGSPGVGKTHLAVATLKAIYEKKGIR-----GYFF---------DTKDLI--------FRLKHLMDEG 89 (180)
T ss_dssp SCCGGGCCEEEECCSSSSSHHHHHHHHHHHHHHHSCCC-----CCEE---------EHHHHH--------HHHHHHHHHT
T ss_pred hccccCCCEEEEECCCCCCHHHHHHHHHHHHHHHcCCe-----EEEE---------EHHHHH--------HHHHHHhcCc
Confidence 56778899999999999999999999999987666631 1121 121211 1111111000
Q ss_pred CCchhhhhCCCCCccccccCCCCCCHHHHHHHHHHHhhccCCCeeeeeCCCC-CcCHHHHHHHHHHHHh--cCCCEEEEE
Q 037346 460 SLKKDLEVLPFGDQTIIGERGINLSGGQKQRIQIARPLYQDADIFLLDDPFS-PVDDHTGAHLFKFCWV--SSSKTVIYA 536 (1156)
Q Consensus 460 ~l~~~~~~~~~g~~t~v~~~g~~LSgGqkqRi~lAral~~~~~illlDep~s-~lD~~~~~~i~~~~~~--~~~~tvi~v 536 (1156)
... -+...+.+|++++||||++ ++|+...+.+++.+.. .+++++|++
T Consensus 90 ----------------------~~~--------~~~~~~~~~~llilDE~~~~~~~~~~~~~l~~ll~~~~~~~~~ii~t 139 (180)
T 3ec2_A 90 ----------------------KDT--------KFLKTVLNSPVLVLDDLGSERLSDWQRELISYIITYRYNNLKSTIIT 139 (180)
T ss_dssp ----------------------CCS--------HHHHHHHTCSEEEEETCSSSCCCHHHHHHHHHHHHHHHHTTCEEEEE
T ss_pred ----------------------hHH--------HHHHHhcCCCEEEEeCCCCCcCCHHHHHHHHHHHHHHHHcCCCEEEE
Confidence 000 1112245999999999995 8999888777665433 368999999
Q ss_pred ccCC
Q 037346 537 THQV 540 (1156)
Q Consensus 537 tH~~ 540 (1156)
||..
T Consensus 140 sn~~ 143 (180)
T 3ec2_A 140 TNYS 143 (180)
T ss_dssp CCCC
T ss_pred cCCC
Confidence 9975
|
| >2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1 | Back alignment and structure |
|---|
Probab=99.00 E-value=2.3e-12 Score=154.34 Aligned_cols=158 Identities=17% Similarity=0.175 Sum_probs=100.0
Q ss_pred CccccceEEeeCCeEEEEEcCCCCChHHHHHHHhCCCCCCCcEEEEcCe----------EEEEecCCcCC-CccHHHHhh
Q 037346 374 PTLRNINLKVFHGMRVAVCGTVGSGKSSCLSCILGGVPKESGIIRLCGT----------KAYVAQSPWIQ-SGKIEENIL 442 (1156)
Q Consensus 374 ~~l~~i~l~i~~g~~~~ivG~~GsGKSTll~~i~g~~~~~~G~i~~~g~----------~~~v~Q~~~~~-~~ti~eni~ 442 (1156)
.+++++++.+++|+.++|+||||||||||+++|+|+++|++|.|.+.|. +++..|.+... ..|..+++.
T Consensus 248 ~~l~~l~~~v~~g~~i~I~GptGSGKTTlL~aL~~~i~~~~giitied~~E~~~~~~~~v~~~~r~~~~~~~~~~~~~l~ 327 (511)
T 2oap_1 248 GVLAYLWLAIEHKFSAIVVGETASGKTTTLNAIMMFIPPDAKVVSIEDTREIKLYHENWIAEVTRTGMGEGEIDMYDLLR 327 (511)
T ss_dssp HHHHHHHHHHHTTCCEEEEESTTSSHHHHHHHHGGGSCTTCCEEEEESSCCCCCCCSSEEEEECBCCSSSCCBCHHHHHH
T ss_pred HHHHHHHHHHhCCCEEEEECCCCCCHHHHHHHHHhhCCCCCCEEEEcCcccccCCCCCeEEEEeecccccCCcCHHHHHH
Confidence 4688999999999999999999999999999999999999999999774 24455544311 126665543
Q ss_pred c-----------CCCCCHHHHHHHHHHhCCc-------------hhh---hhCCCCCccccc-------cCCCCCCHHHH
Q 037346 443 F-----------GKEMDRERYERVLEACSLK-------------KDL---EVLPFGDQTIIG-------ERGINLSGGQK 488 (1156)
Q Consensus 443 ~-----------~~~~~~~~~~~~~~~~~l~-------------~~~---~~~~~g~~t~v~-------~~g~~LSgGqk 488 (1156)
. |.--+.+ ...+++++..- +.+ ...+.+....+. .....+|||||
T Consensus 328 ~~LR~~PD~iivgEir~~E-~~~~l~a~~tGh~~~sT~Ha~~~~~~l~Rl~~~~~~v~~~l~~~l~~vi~~~~~~s~G~~ 406 (511)
T 2oap_1 328 AALRQRPDYIIVGEVRGRE-AQTLFQAMSTGHASYSTLHAGDINQMVYRLESEPLKVPRSMLQFLDIALVQTMWVRGNTR 406 (511)
T ss_dssp TTGGGCCSEEEESCCCSTH-HHHHHHHHHTTCEEEEEEECSSHHHHHHHHHSTTTCCCGGGGGGCCEEEEEEEEESSSCE
T ss_pred HhhccCCCeEEeCCcCHHH-HHHHHHhhcCCCCcccccccCCHHHHHHHHHhcccccHHHHHhhccEEEEEEEEEeCCCc
Confidence 2 2222222 33344443210 011 111222211111 22346899999
Q ss_pred HHHHHHHhhccCCCeeeeeCCCCCcCHHHHHHHHHHHHh--cCCCEEEE--EccCCCccc
Q 037346 489 QRIQIARPLYQDADIFLLDDPFSPVDDHTGAHLFKFCWV--SSSKTVIY--ATHQVEFLP 544 (1156)
Q Consensus 489 qRi~lAral~~~~~illlDep~s~lD~~~~~~i~~~~~~--~~~~tvi~--vtH~~~~~~ 544 (1156)
||.++|.+ | +++||+.....+++.+.. ..++|+++ +||+++.+.
T Consensus 407 ~R~~~ai~-----------E-~~GlDp~~~~~~~~~l~~~~~~~~tii~~~~sH~l~ei~ 454 (511)
T 2oap_1 407 LRRTKEVN-----------E-ILGIDPVDKNLLVNQFVKWDPKEDKHIEVSMPKKLEKMA 454 (511)
T ss_dssp EEEEEEEE-----------E-EEECCSSSSCCEEEEEEEEETTTTEEEECSCCTHHHHHH
T ss_pred eEEEEEEE-----------E-EcCcccCCCeEEEEEeEEEcccCCEEEEcccHHHHHHHH
Confidence 99877521 6 999998776544443332 34788875 899987664
|
| >3thx_B DNA mismatch repair protein MSH3; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 3thw_B* 3thy_B* 3thz_B* | Back alignment and structure |
|---|
Probab=98.99 E-value=7.8e-11 Score=149.05 Aligned_cols=134 Identities=15% Similarity=0.129 Sum_probs=81.0
Q ss_pred eEEEEEEEEEEcCCCCceeeCCCCCCHHHHHHHHhhcccCCCceEEEcCeeCCCCChHHHhhcCeeeccccc-------c
Q 037346 947 EVNIRHLQVRYAPNLPLVLRGRTGSGKSTLIQTLFRIVESTAGHILIDGKDISLIGLHDLRTRLSIIPQDPT-------M 1019 (1156)
Q Consensus 947 ~I~~~~Vsf~Y~~~~~~vL~G~SGsGKSTL~~lL~rl~~p~~G~I~idG~di~~i~~~~LR~~i~~VpQdp~-------L 1019 (1156)
....+||+|.-.+++-++|.|||||||||+++++.++.-. .+.-++||++.. +
T Consensus 660 ~~V~ndvsl~~~~g~i~~ItGPNGaGKSTlLr~i~~i~~~--------------------aq~g~~vpa~~~~i~~~d~i 719 (918)
T 3thx_B 660 QYVPNNTDLSEDSERVMIITGPNMGGKSSYIKQVALITIM--------------------AQIGSYVPAEEATIGIVDGI 719 (918)
T ss_dssp SSCCEEEEECTTSCCEEEEESCCCHHHHHHHHHHHHHHHH--------------------HHHTCCBSSSEEEEECCSEE
T ss_pred ceecccccccCCCCeEEEEECCCCCchHHHHHHHHHHHHH--------------------hhcCccccchhhhhhHHHHH
Confidence 4567899998877887889999999999999998754321 111223444321 1
Q ss_pred ccc-cchhccCCCCCCCHHHHHHHHHHcCCChHHHhhcCCccccccccccCCCEEEEecCCcCCCHHHHHHHH-HHHHHh
Q 037346 1020 FEG-TTRSNLDPLEEHADEQIWEALDKCQLGDEVRKKKGKLDSQGRVLLKKSKVLVLDEATASVDTATDNQIQ-QTLRQH 1097 (1156)
Q Consensus 1020 F~g-TIr~Nl~~~~~~~deei~~al~~~~l~~~i~~lp~gl~s~ARALLr~~~ILiLDEaTS~LD~~te~~I~-~~l~~~ 1097 (1156)
|.. .+.+|+.-....-..++.+.+ ..+|+ +.+|++|||||||+++|+.....|. ..++.+
T Consensus 720 ~~~ig~~d~l~~~~stfs~em~~~~-----------------~il~~-a~~p~LlLLDEP~~GlD~~~~~~i~~~il~~L 781 (918)
T 3thx_B 720 FTRMGAADNIYKGRSTFMEELTDTA-----------------EIIRK-ATSQSLVILDELGRGTSTHDGIAIAYATLEYF 781 (918)
T ss_dssp EEEC----------CCHHHHHHHHH-----------------HHHHH-CCTTCEEEEESTTTTSCHHHHHHHHHHHHHHH
T ss_pred HHhCChHHHHHHhHHHhhHHHHHHH-----------------HHHHh-ccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHH
Confidence 211 122222110000000111000 01233 5789999999999999999887776 555544
Q ss_pred c--CCceEEEeecCcccccccCE
Q 037346 1098 F--SDCTVVTIAHRITSVLDSAM 1118 (1156)
Q Consensus 1098 ~--~~~TvI~IaHrl~ti~~~D~ 1118 (1156)
. .++|+|++||.++...-+|+
T Consensus 782 ~~~~g~tvl~vTH~~el~~l~~~ 804 (918)
T 3thx_B 782 IRDVKSLTLFVTHYPPVCELEKN 804 (918)
T ss_dssp HHTTCCEEEEECSCGGGGGHHHH
T ss_pred HHhcCCeEEEEeCcHHHHHHHhh
Confidence 2 48999999999887765554
|
| >2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A | Back alignment and structure |
|---|
Probab=98.98 E-value=1.7e-11 Score=133.81 Aligned_cols=134 Identities=17% Similarity=0.144 Sum_probs=89.3
Q ss_pred CCceeeCCCCCCHHHHHHHHh---hcccCCCceEEEcCeeCCCCChHHHhhcCeeecccccccc-ccchhccCC------
Q 037346 961 LPLVLRGRTGSGKSTLIQTLF---RIVESTAGHILIDGKDISLIGLHDLRTRLSIIPQDPTMFE-GTTRSNLDP------ 1030 (1156)
Q Consensus 961 ~~~vL~G~SGsGKSTL~~lL~---rl~~p~~G~I~idG~di~~i~~~~LR~~i~~VpQdp~LF~-gTIr~Nl~~------ 1030 (1156)
..++|.|++|||||||+++|. |+..|+.|+|.++|.+.. ..++..+..++|++.++. .|+.+|+..
T Consensus 28 ~~i~l~G~~GsGKSTl~k~La~~lg~~~~~~G~i~~~~~~~~----~~~~~~i~~~~~~~~~~~~~~v~~~l~~~l~~~~ 103 (246)
T 2bbw_A 28 LRAVILGPPGSGKGTVCQRIAQNFGLQHLSSGHFLRENIKAS----TEVGEMAKQYIEKSLLVPDHVITRLMMSELENRR 103 (246)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHCCCCEEHHHHHHHHHHTT----CHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTCT
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhCCeEecHHHHHHHHHhcC----ChHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhcC
Confidence 346788999999999999999 999999999999887642 235566777788776554 367766631
Q ss_pred -------CCCCCHHHHHHHHHHcCCC--------------hHHHhhcCCcccccccc-ccCCCEEEEe----cCCcCCCH
Q 037346 1031 -------LEEHADEQIWEALDKCQLG--------------DEVRKKKGKLDSQGRVL-LKKSKVLVLD----EATASVDT 1084 (1156)
Q Consensus 1031 -------~~~~~deei~~al~~~~l~--------------~~i~~lp~gl~s~ARAL-Lr~~~ILiLD----EaTS~LD~ 1084 (1156)
+.+.+.++.....+..... ......+..+....||+ +.+|++++|| |||+++|.
T Consensus 104 ~~~~il~g~~~~~~~~~~l~~~~~~~~vi~L~~~~~~~l~r~~~r~~~~lSgrv~al~~~~P~~lllD~~~~EP~~~ld~ 183 (246)
T 2bbw_A 104 GQHWLLDGFPRTLGQAEALDKICEVDLVISLNIPFETLKDRLSRRWIHPPSGRVYNLDFNPPHVHGIDDVTGEPLVQQED 183 (246)
T ss_dssp TSCEEEESCCCSHHHHHHHHTTCCCCEEEEEECCHHHHHHHHHTEEEETTTTEEEETTTSCCSSTTBCTTTCCBCBCCGG
T ss_pred CCeEEEECCCCCHHHHHHHHhhcCCCEEEEEECCHHHHHHHHHcCCCcCCCCCccccccCCCcccccccccccccccCCC
Confidence 0112233332222112211 11111122121123788 9999999999 99999999
Q ss_pred HHHHHHHHHHHHhc
Q 037346 1085 ATDNQIQQTLRQHF 1098 (1156)
Q Consensus 1085 ~te~~I~~~l~~~~ 1098 (1156)
.+.+.+.+.++++.
T Consensus 184 ~~~~~i~~~l~~~~ 197 (246)
T 2bbw_A 184 DKPEAVAARLRQYK 197 (246)
T ss_dssp GSHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHH
Confidence 99999999887753
|
| >2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B} | Back alignment and structure |
|---|
Probab=98.98 E-value=5.2e-10 Score=111.78 Aligned_cols=87 Identities=22% Similarity=0.298 Sum_probs=62.0
Q ss_pred CCeEEEEEcCCCCChHHHHHHHhCCCCCCCcEEEEcCeEEEEecCCcCCCccHHHHhhcCCCCCHHHHHHHHHHhCCchh
Q 037346 385 HGMRVAVCGTVGSGKSSCLSCILGGVPKESGIIRLCGTKAYVAQSPWIQSGKIEENILFGKEMDRERYERVLEACSLKKD 464 (1156)
Q Consensus 385 ~g~~~~ivG~~GsGKSTll~~i~g~~~~~~G~i~~~g~~~~v~Q~~~~~~~ti~eni~~~~~~~~~~~~~~~~~~~l~~~ 464 (1156)
+|+.++|+||+|||||||+++|.|++.+ +|. ++.|++.......
T Consensus 35 ~g~~~~l~G~~G~GKTtL~~~i~~~~~~-~g~-----~~~~~~~~~~~~~------------------------------ 78 (149)
T 2kjq_A 35 HGQFIYVWGEEGAGKSHLLQAWVAQALE-AGK-----NAAYIDAASMPLT------------------------------ 78 (149)
T ss_dssp CCSEEEEESSSTTTTCHHHHHHHHHHHT-TTC-----CEEEEETTTSCCC------------------------------
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHh-cCC-----cEEEEcHHHhhHH------------------------------
Confidence 8999999999999999999999999876 451 2334443322110
Q ss_pred hhhCCCCCccccccCCCCCCHHHHHHHHHHHhhccCCCeeeeeCCCCCcCHHHHHHHHHHHHh--cCCCE-EEEEccC
Q 037346 465 LEVLPFGDQTIIGERGINLSGGQKQRIQIARPLYQDADIFLLDDPFSPVDDHTGAHLFKFCWV--SSSKT-VIYATHQ 539 (1156)
Q Consensus 465 ~~~~~~g~~t~v~~~g~~LSgGqkqRi~lAral~~~~~illlDep~s~lD~~~~~~i~~~~~~--~~~~t-vi~vtH~ 539 (1156)
+++.+|+++++|||++ +|...++.+++.+.. .+|++ +|++||.
T Consensus 79 -------------------------------~~~~~~~lLilDE~~~-~~~~~~~~l~~li~~~~~~g~~~iiits~~ 124 (149)
T 2kjq_A 79 -------------------------------DAAFEAEYLAVDQVEK-LGNEEQALLFSIFNRFRNSGKGFLLLGSEY 124 (149)
T ss_dssp -------------------------------GGGGGCSEEEEESTTC-CCSHHHHHHHHHHHHHHHHTCCEEEEEESS
T ss_pred -------------------------------HHHhCCCEEEEeCccc-cChHHHHHHHHHHHHHHHcCCcEEEEECCC
Confidence 3456899999999998 555556667665432 34677 7777774
|
| >2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B} | Back alignment and structure |
|---|
Probab=98.98 E-value=4.6e-10 Score=112.22 Aligned_cols=86 Identities=17% Similarity=0.207 Sum_probs=65.3
Q ss_pred CCCCceeeCCCCCCHHHHHHHHhhcccCCCc--eEEEcCeeCCCCChHHHhhcCeeeccccccccccchhccCCCCCCCH
Q 037346 959 PNLPLVLRGRTGSGKSTLIQTLFRIVESTAG--HILIDGKDISLIGLHDLRTRLSIIPQDPTMFEGTTRSNLDPLEEHAD 1036 (1156)
Q Consensus 959 ~~~~~vL~G~SGsGKSTL~~lL~rl~~p~~G--~I~idG~di~~i~~~~LR~~i~~VpQdp~LF~gTIr~Nl~~~~~~~d 1036 (1156)
++..++|.|++|||||||++++.+.+.+ +| .+++++.++..-
T Consensus 35 ~g~~~~l~G~~G~GKTtL~~~i~~~~~~-~g~~~~~~~~~~~~~~----------------------------------- 78 (149)
T 2kjq_A 35 HGQFIYVWGEEGAGKSHLLQAWVAQALE-AGKNAAYIDAASMPLT----------------------------------- 78 (149)
T ss_dssp CCSEEEEESSSTTTTCHHHHHHHHHHHT-TTCCEEEEETTTSCCC-----------------------------------
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHh-cCCcEEEEcHHHhhHH-----------------------------------
Confidence 5667789999999999999999999987 57 677766543321
Q ss_pred HHHHHHHHHcCCChHHHhhcCCccccccccccCCCEEEEecCCcCCCHHHHHHHHHHHHHhc-CCce-EEEeecC
Q 037346 1037 EQIWEALDKCQLGDEVRKKKGKLDSQGRVLLKKSKVLVLDEATASVDTATDNQIQQTLRQHF-SDCT-VVTIAHR 1109 (1156)
Q Consensus 1037 eei~~al~~~~l~~~i~~lp~gl~s~ARALLr~~~ILiLDEaTS~LD~~te~~I~~~l~~~~-~~~T-vI~IaHr 1109 (1156)
+++.+|++|+||||++ +|...++.+.+.+++.. +++| +|+++|+
T Consensus 79 ----------------------------~~~~~~~lLilDE~~~-~~~~~~~~l~~li~~~~~~g~~~iiits~~ 124 (149)
T 2kjq_A 79 ----------------------------DAAFEAEYLAVDQVEK-LGNEEQALLFSIFNRFRNSGKGFLLLGSEY 124 (149)
T ss_dssp ----------------------------GGGGGCSEEEEESTTC-CCSHHHHHHHHHHHHHHHHTCCEEEEEESS
T ss_pred ----------------------------HHHhCCCEEEEeCccc-cChHHHHHHHHHHHHHHHcCCcEEEEECCC
Confidence 2456899999999998 66555777888877654 3577 7777775
|
| >3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A* | Back alignment and structure |
|---|
Probab=98.96 E-value=4.8e-10 Score=129.93 Aligned_cols=148 Identities=16% Similarity=0.177 Sum_probs=84.3
Q ss_pred EeeCCeEEEEEcCCCCChHHHHH--HHhCCCCCCCcEEEEcCeEEEEecCCcCCCccHHHHhhcCCCCCHHHHHHHHHHh
Q 037346 382 KVFHGMRVAVCGTVGSGKSSCLS--CILGGVPKESGIIRLCGTKAYVAQSPWIQSGKIEENILFGKEMDRERYERVLEAC 459 (1156)
Q Consensus 382 ~i~~g~~~~ivG~~GsGKSTll~--~i~g~~~~~~G~i~~~g~~~~v~Q~~~~~~~ti~eni~~~~~~~~~~~~~~~~~~ 459 (1156)
-|++|++++|+||+|||||||++ ++.+..+++.|. .++.+.|+.-+.. ++.++..+..+..
T Consensus 174 GI~~Gei~~I~G~sGsGKTTLl~~la~~~~~p~~~Gg--~~~~viyid~E~~---------------~~~~rl~~~a~~~ 236 (400)
T 3lda_A 174 GVETGSITELFGEFRTGKSQLCHTLAVTCQIPLDIGG--GEGKCLYIDTEGT---------------FRPVRLVSIAQRF 236 (400)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTC--CSSEEEEEESSSC---------------CCHHHHHHHHHHT
T ss_pred CcCCCcEEEEEcCCCCChHHHHHHHHHHhccCcccCC--CCCcEEEEeCCCc---------------cCHHHHHHHHHHc
Confidence 58999999999999999999999 456777775551 0223333332221 2234444444555
Q ss_pred CCchh--hhhCCCCCccccccCCCCCCH-HHHHHHHHHHhhc--cCCCeeeeeCCCCCcCHHHH------------HHHH
Q 037346 460 SLKKD--LEVLPFGDQTIIGERGINLSG-GQKQRIQIARPLY--QDADIFLLDDPFSPVDDHTG------------AHLF 522 (1156)
Q Consensus 460 ~l~~~--~~~~~~g~~t~v~~~g~~LSg-GqkqRi~lAral~--~~~~illlDep~s~lD~~~~------------~~i~ 522 (1156)
++... ++.+ .+.. ..++ .+.+.+.-++.++ .+|+++++|||++.+|+... ..++
T Consensus 237 gl~~~~vleni------~~~~---~~~~~~~~~~l~~~~~~l~~~~~~llVIDs~t~~~~~~~sg~g~l~~Rq~~l~~il 307 (400)
T 3lda_A 237 GLDPDDALNNV------AYAR---AYNADHQLRLLDAAAQMMSESRFSLIVVDSVMALYRTDFSGRGELSARQMHLAKFM 307 (400)
T ss_dssp TCCHHHHHHTE------EEEE---CCSHHHHHHHHHHHHHHHHHSCEEEEEEETGGGGCC------CCHHHHHHHHHHHH
T ss_pred CCChHhHhhcE------EEec---cCChHHHHHHHHHHHHHHHhcCCceEEecchhhhCchhhcCccchHHHHHHHHHHH
Confidence 54321 1100 0111 1122 3344444444433 47999999999999997532 2333
Q ss_pred HHHHh---cCCCEEEEEccCCC-------------------cccc-CCEEEEEeCC
Q 037346 523 KFCWV---SSSKTVIYATHQVE-------------------FLPA-ADLILVIKDG 555 (1156)
Q Consensus 523 ~~~~~---~~~~tvi~vtH~~~-------------------~~~~-~d~i~~l~~G 555 (1156)
+.+.. ..|.|||+++|... .+.+ +|.++.|+++
T Consensus 308 ~~L~~lake~gitVIlv~Hv~~~~~g~~~~~g~~~~p~gg~~l~~~ad~vl~L~~~ 363 (400)
T 3lda_A 308 RALQRLADQFGVAVVVTNQVVAQVDGGMAFNPDPKKPIGGNIMAYSSTTRLGFKKG 363 (400)
T ss_dssp HHHHHHHHHHCCEEEEEEEC--------------------CHHHHHCSEEEEEEEC
T ss_pred HHHHHHHHHcCCEEEEEEeecccCCccccccCCCccCCchhHHHHhcceEEEEEec
Confidence 33322 45899999999832 1233 7888888765
|
| >2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A | Back alignment and structure |
|---|
Probab=98.92 E-value=4.9e-10 Score=131.21 Aligned_cols=75 Identities=20% Similarity=0.264 Sum_probs=59.6
Q ss_pred EEEcCCCCceeeCCCCCCHHHHHHHHhhcccCCCceEEEcCeeCCCCC----hHH--HhhcCeeeccccccc-cccchhc
Q 037346 955 VRYAPNLPLVLRGRTGSGKSTLIQTLFRIVESTAGHILIDGKDISLIG----LHD--LRTRLSIIPQDPTMF-EGTTRSN 1027 (1156)
Q Consensus 955 f~Y~~~~~~vL~G~SGsGKSTL~~lL~rl~~p~~G~I~idG~di~~i~----~~~--LR~~i~~VpQdp~LF-~gTIr~N 1027 (1156)
|...++..++|.|+||||||||++.|.|++.|++|+|.++|.|+.... +.. .|+++++|+|++.++ ..|+++|
T Consensus 288 l~i~~GeVI~LVGpNGSGKTTLl~~LAgll~~~~G~V~l~g~D~~r~aa~eQL~~~~~r~~I~vV~Q~~~~~p~~tV~e~ 367 (503)
T 2yhs_A 288 VEGKAPFVILMVGVNGVGKTTTIGKLARQFEQQGKSVMLAAGDTFRAAAVEQLQVWGQRNNIPVIAQHTGADSASVIFDA 367 (503)
T ss_dssp CCSCTTEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEECCCTTCHHHHHHHHHHHHHHTCCEECCSTTCCHHHHHHHH
T ss_pred eeccCCeEEEEECCCcccHHHHHHHHHHHhhhcCCeEEEecCcccchhhHHHHHHHHHhcCceEEecccCcCHHHHHHHH
Confidence 333445556889999999999999999999999999999998876542 222 377899999998755 5588888
Q ss_pred cC
Q 037346 1028 LD 1029 (1156)
Q Consensus 1028 l~ 1029 (1156)
+.
T Consensus 368 l~ 369 (503)
T 2yhs_A 368 IQ 369 (503)
T ss_dssp HH
T ss_pred HH
Confidence 74
|
| >3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B* | Back alignment and structure |
|---|
Probab=98.91 E-value=7.8e-10 Score=124.97 Aligned_cols=134 Identities=14% Similarity=0.055 Sum_probs=86.2
Q ss_pred EeeCCeEEEEEcCCCCChHHHHHHHhCCCCCCCcEEEEcCe-------------------EEEEecCCcCCC-ccHHHHh
Q 037346 382 KVFHGMRVAVCGTVGSGKSSCLSCILGGVPKESGIIRLCGT-------------------KAYVAQSPWIQS-GKIEENI 441 (1156)
Q Consensus 382 ~i~~g~~~~ivG~~GsGKSTll~~i~g~~~~~~G~i~~~g~-------------------~~~v~Q~~~~~~-~ti~eni 441 (1156)
..++|++++|+|||||||||+++.|+|.++|++|+|.+.|. +.+++|++.++. .+++||+
T Consensus 125 ~~~~g~vi~lvG~nGaGKTTll~~Lag~l~~~~g~V~l~g~D~~r~~a~eql~~~~~~~gv~~v~q~~~~~p~~~v~e~l 204 (328)
T 3e70_C 125 KAEKPYVIMFVGFNGSGKTTTIAKLANWLKNHGFSVVIAASDTFRAGAIEQLEEHAKRIGVKVIKHSYGADPAAVAYDAI 204 (328)
T ss_dssp SSCSSEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEECCSSTTHHHHHHHHHHHTTCEEECCCTTCCHHHHHHHHH
T ss_pred cCCCCeEEEEECCCCCCHHHHHHHHHHHHHhcCCEEEEEeecccccchHHHHHHHHHHcCceEEeccccCCHHHHHHHHH
Confidence 34789999999999999999999999999999999998763 348888876654 4889998
Q ss_pred hcCCCCCHHHHHHHHHHhCCchhhhhCCCCCccccccCCCCCCHHHHHHHHHHHhhccCCCeeeeeCCCCCcCHHHHHHH
Q 037346 442 LFGKEMDRERYERVLEACSLKKDLEVLPFGDQTIIGERGINLSGGQKQRIQIARPLYQDADIFLLDDPFSPVDDHTGAHL 521 (1156)
Q Consensus 442 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~t~v~~~g~~LSgGqkqRi~lAral~~~~~illlDep~s~lD~~~~~~i 521 (1156)
.++.. ..... -.++. + |... .-..=.++.-.++|++..++++++||.++. .|.....
T Consensus 205 ~~~~~----------~~~d~-vliDt-a-------G~~~-~~~~l~~eL~~i~ral~~de~llvLDa~t~-~~~~~~~-- 261 (328)
T 3e70_C 205 QHAKA----------RGIDV-VLIDT-A-------GRSE-TNRNLMDEMKKIARVTKPNLVIFVGDALAG-NAIVEQA-- 261 (328)
T ss_dssp HHHHH----------HTCSE-EEEEE-C-------CSCC-TTTCHHHHHHHHHHHHCCSEEEEEEEGGGT-THHHHHH--
T ss_pred HHHHh----------ccchh-hHHhh-c-------cchh-HHHHHHHHHHHHHHHhcCCCCEEEEecHHH-HHHHHHH--
Confidence 65420 00000 00110 0 1000 000112233348999998888888885554 3443322
Q ss_pred HHHHHhcCCCEEEEEccC
Q 037346 522 FKFCWVSSSKTVIYATHQ 539 (1156)
Q Consensus 522 ~~~~~~~~~~tvi~vtH~ 539 (1156)
+......+.|.|++||-
T Consensus 262 -~~~~~~~~it~iilTKl 278 (328)
T 3e70_C 262 -RQFNEAVKIDGIILTKL 278 (328)
T ss_dssp -HHHHHHSCCCEEEEECG
T ss_pred -HHHHHhcCCCEEEEeCc
Confidence 22222357899999994
|
| >1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20 | Back alignment and structure |
|---|
Probab=98.88 E-value=2.1e-09 Score=123.79 Aligned_cols=126 Identities=13% Similarity=0.138 Sum_probs=73.8
Q ss_pred EEEEEcCCCCChHHHHHHHhC-CCCCCCcEEEEcCe-----------EEEEecCCcCC-CccHHHHhhcCCCCCHHHHHH
Q 037346 388 RVAVCGTVGSGKSSCLSCILG-GVPKESGIIRLCGT-----------KAYVAQSPWIQ-SGKIEENILFGKEMDRERYER 454 (1156)
Q Consensus 388 ~~~ivG~~GsGKSTll~~i~g-~~~~~~G~i~~~g~-----------~~~v~Q~~~~~-~~ti~eni~~~~~~~~~~~~~ 454 (1156)
.+.|+||+|+||||++++|+| ++.|..|.+.++|. +++++|.+++. +.+- .+ ..+....++
T Consensus 38 ~~ll~Gp~G~GKTtl~~~la~~l~~~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~-~~~~~~~~~ 111 (354)
T 1sxj_E 38 HLLLYGPNGTGKKTRCMALLESIFGPGVYRLKIDVRQFVTASNRKLELNVVSSPYHLEITPSD-----MG-NNDRIVIQE 111 (354)
T ss_dssp CEEEECSTTSSHHHHHHTHHHHHSCTTCCC------------------CCEECSSEEEECCC----------CCHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHHcCCCCCeEEecceeecccccccceeeeecccceEEecHhh-----cC-CcchHHHHH
Confidence 389999999999999999999 78899999888763 45666665431 1110 01 011112334
Q ss_pred HHHHhCCchhhhhCCCCCccccccCCCCCCHHHHHHHHHHHhhccCCCeeeeeCCCCCcCHHHHHHHHHHHHh-cCCCEE
Q 037346 455 VLEACSLKKDLEVLPFGDQTIIGERGINLSGGQKQRIQIARPLYQDADIFLLDDPFSPVDDHTGAHLFKFCWV-SSSKTV 533 (1156)
Q Consensus 455 ~~~~~~l~~~~~~~~~g~~t~v~~~g~~LSgGqkqRi~lAral~~~~~illlDep~s~lD~~~~~~i~~~~~~-~~~~tv 533 (1156)
.++.+.....+. ..+ +||| +..+|+++++|||++ ||+.....+.+.+.. ..+.++
T Consensus 112 ~i~~~~~~~~~~-------~~~-----~ls~-----------l~~~~~vlilDE~~~-L~~~~~~~L~~~le~~~~~~~~ 167 (354)
T 1sxj_E 112 LLKEVAQMEQVD-------FQD-----SKDG-----------LAHRYKCVIINEANS-LTKDAQAALRRTMEKYSKNIRL 167 (354)
T ss_dssp HHHHHTTTTC-----------------------------------CCEEEEEECTTS-SCHHHHHHHHHHHHHSTTTEEE
T ss_pred HHHHHHHhcccc-------ccc-----cccc-----------cCCCCeEEEEeCccc-cCHHHHHHHHHHHHhhcCCCEE
Confidence 443332111110 000 4666 778999999999999 999998888776544 356789
Q ss_pred EEEccCCCcc
Q 037346 534 IYATHQVEFL 543 (1156)
Q Consensus 534 i~vtH~~~~~ 543 (1156)
|++||+++.+
T Consensus 168 Il~t~~~~~l 177 (354)
T 1sxj_E 168 IMVCDSMSPI 177 (354)
T ss_dssp EEEESCSCSS
T ss_pred EEEeCCHHHH
Confidence 9999998754
|
| >2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=98.88 E-value=2.1e-10 Score=128.88 Aligned_cols=101 Identities=16% Similarity=0.178 Sum_probs=74.4
Q ss_pred EeeCCeEEEEEcCCCCChHHHHHHHhCCCCCCCcEEEE---cCe-------------EEEEecCCcCC------CccHHH
Q 037346 382 KVFHGMRVAVCGTVGSGKSSCLSCILGGVPKESGIIRL---CGT-------------KAYVAQSPWIQ------SGKIEE 439 (1156)
Q Consensus 382 ~i~~g~~~~ivG~~GsGKSTll~~i~g~~~~~~G~i~~---~g~-------------~~~v~Q~~~~~------~~ti~e 439 (1156)
++.+|++++++||||||||||+++|+ ..+|..|+|.+ +|+ ++|++|+|.+. ..|+ |
T Consensus 161 ~~l~G~i~~l~G~sG~GKSTLln~l~-~~~~~~G~i~~~~~~G~~~t~~~~~~~~~~~g~v~d~pg~~~~~l~~~lt~-e 238 (302)
T 2yv5_A 161 DYLEGFICILAGPSGVGKSSILSRLT-GEELRTQEVSEKTERGRHTTTGVRLIPFGKGSFVGDTPGFSKVEATMFVKP-R 238 (302)
T ss_dssp HHTTTCEEEEECSTTSSHHHHHHHHH-SCCCCCSCC---------CCCCEEEEEETTTEEEESSCCCSSCCGGGTSCG-G
T ss_pred hhccCcEEEEECCCCCCHHHHHHHHH-HhhCcccccccccCCCCCceeeEEEEEcCCCcEEEECcCcCcCcccccCCH-H
Confidence 45679999999999999999999999 99999999998 652 48999999653 4578 8
Q ss_pred Hh--hcCC------------C--CCHHHHHHHHHHhCCch-hhhhCCCCCccccccCCCCCCHHHHHHHHHHH
Q 037346 440 NI--LFGK------------E--MDRERYERVLEACSLKK-DLEVLPFGDQTIIGERGINLSGGQKQRIQIAR 495 (1156)
Q Consensus 440 ni--~~~~------------~--~~~~~~~~~~~~~~l~~-~~~~~~~g~~t~v~~~g~~LSgGqkqRi~lAr 495 (1156)
|+ .|+. . ....+.+++++..+|.+ ..+.. ...|||.+++++.|||
T Consensus 239 ~l~~~f~~~~~~~c~~~~~~~~~e~~~~v~~~l~~~~L~~~~~~~~-----------~~~ls~~~~R~~~~~~ 300 (302)
T 2yv5_A 239 EVRNYFREFLRYQCKYPDCTHTNEPGCAVKEAVKNGEISCERYKSY-----------LKIIKVYLEEIKELCR 300 (302)
T ss_dssp GGGGGCGGGHHHHHHSTTCCSSSCTTCHHHHHHHTTSSCHHHHHHH-----------HHHTTCCCTTHHHHSS
T ss_pred HHHHHHHHHHHccCCCCCCCCCCCCCCHHHHHHHcCCCCHHHHHHH-----------HHHHHHHHHHHHHHhc
Confidence 88 5541 1 12346777888888865 33332 2479998899999987
|
| >2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.84 E-value=1.7e-11 Score=135.78 Aligned_cols=131 Identities=12% Similarity=0.072 Sum_probs=88.1
Q ss_pred CccccceEEeeCCeEEEEEcCCCCChHHHHHHHhCCCCCCCcEEEEcCe-------------EEEEecCC-cCC-CccHH
Q 037346 374 PTLRNINLKVFHGMRVAVCGTVGSGKSSCLSCILGGVPKESGIIRLCGT-------------KAYVAQSP-WIQ-SGKIE 438 (1156)
Q Consensus 374 ~~l~~i~l~i~~g~~~~ivG~~GsGKSTll~~i~g~~~~~~G~i~~~g~-------------~~~v~Q~~-~~~-~~ti~ 438 (1156)
.+++++++++++| ++|+||||||||||+++|+|++.+ |.+.++|. +++++|.+ ... .-++.
T Consensus 34 ~~l~~~~l~~~~G--vlL~Gp~GtGKTtLakala~~~~~--~~i~i~g~~l~~~~~~~~~~~i~~vf~~a~~~~p~i~~~ 109 (274)
T 2x8a_A 34 DQFKALGLVTPAG--VLLAGPPGCGKTLLAKAVANESGL--NFISVKGPELLNMYVGESERAVRQVFQRAKNSAPCVIFF 109 (274)
T ss_dssp HHHHHTTCCCCSE--EEEESSTTSCHHHHHHHHHHHTTC--EEEEEETTTTCSSTTHHHHHHHHHHHHHHHHTCSEEEEE
T ss_pred HHHHHcCCCCCCe--EEEECCCCCcHHHHHHHHHHHcCC--CEEEEEcHHHHhhhhhHHHHHHHHHHHHHHhcCCCeEee
Confidence 4789999999999 999999999999999999999876 78888762 24555543 222 22455
Q ss_pred HHhhcCCCCCHHHHHHHHHHhCCchhhhhCCCCCccccccCCCCCCHHHHHHHHHHHhhccCCCeeeeeCCCC-------
Q 037346 439 ENILFGKEMDRERYERVLEACSLKKDLEVLPFGDQTIIGERGINLSGGQKQRIQIARPLYQDADIFLLDDPFS------- 511 (1156)
Q Consensus 439 eni~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~t~v~~~g~~LSgGqkqRi~lAral~~~~~illlDep~s------- 511 (1156)
|||......... .. .-... ..+.+....|||||+||+.+++|+..+|+++ |+|+.
T Consensus 110 Deid~~~~~r~~--~~---~~~~~-----------~~~~~~l~~Lsgg~~~~~~i~ia~tn~p~~L--D~al~r~gRfd~ 171 (274)
T 2x8a_A 110 DEVDALCPRRSD--RE---TGASV-----------RVVNQLLTEMDGLEARQQVFIMAATNRPDII--DPAILRPGRLDK 171 (274)
T ss_dssp ETCTTTCC--------------CT-----------THHHHHHHHHHTCCSTTCEEEEEEESCGGGS--CHHHHSTTSSCE
T ss_pred ehhhhhhcccCC--Cc---chHHH-----------HHHHHHHHhhhcccccCCEEEEeecCChhhC--CHhhcCcccCCe
Confidence 555432211000 00 00010 1112223479999999999999999999975 99864
Q ss_pred -----CcCHHHHHHHHHHHH
Q 037346 512 -----PVDDHTGAHLFKFCW 526 (1156)
Q Consensus 512 -----~lD~~~~~~i~~~~~ 526 (1156)
.-|...+..|++.+.
T Consensus 172 ~i~~~~P~~~~r~~il~~~~ 191 (274)
T 2x8a_A 172 TLFVGLPPPADRLAILKTIT 191 (274)
T ss_dssp EEECCSCCHHHHHHHHHHHT
T ss_pred EEEeCCcCHHHHHHHHHHHH
Confidence 347778888877653
|
| >2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25 | Back alignment and structure |
|---|
Probab=98.84 E-value=1.1e-10 Score=121.69 Aligned_cols=154 Identities=16% Similarity=0.070 Sum_probs=92.0
Q ss_pred ceeeCCCCCCHHHHHHHHhhcccCCCceEEEcCeeCCCCChHHHhhcCeeeccccccc-cccchhccCCC-------C-C
Q 037346 963 LVLRGRTGSGKSTLIQTLFRIVESTAGHILIDGKDISLIGLHDLRTRLSIIPQDPTMF-EGTTRSNLDPL-------E-E 1033 (1156)
Q Consensus 963 ~vL~G~SGsGKSTL~~lL~rl~~p~~G~I~idG~di~~i~~~~LR~~i~~VpQdp~LF-~gTIr~Nl~~~-------~-~ 1033 (1156)
++|.|++|||||||++.|.+ |.+|.+.+||.++... ...++++|.+..+ ..|+++|+... + .
T Consensus 5 i~l~G~~GaGKSTl~~~L~~---~~~g~~~i~~d~~~~~------~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 75 (189)
T 2bdt_A 5 YIITGPAGVGKSTTCKRLAA---QLDNSAYIEGDIINHM------VVGGYRPPWESDELLALTWKNITDLTVNFLLAQND 75 (189)
T ss_dssp EEEECSTTSSHHHHHHHHHH---HSSSEEEEEHHHHHTT------CCTTCCCGGGCHHHHHHHHHHHHHHHHHHHHTTCE
T ss_pred EEEECCCCCcHHHHHHHHhc---ccCCeEEEcccchhhh------hccccccCccchhHHHHHHHHHHHHHHHHHhcCCc
Confidence 57889999999999999987 6789999998765432 2467888876433 34677765310 0 0
Q ss_pred ------CCHHHHHHHHHHcCCChHHHhhcCC-cccccc------ccccCCCEEEEecCCcCCCHHHHHHHHHHHHHhc-C
Q 037346 1034 ------HADEQIWEALDKCQLGDEVRKKKGK-LDSQGR------VLLKKSKVLVLDEATASVDTATDNQIQQTLRQHF-S 1099 (1156)
Q Consensus 1034 ------~~deei~~al~~~~l~~~i~~lp~g-l~s~AR------ALLr~~~ILiLDEaTS~LD~~te~~I~~~l~~~~-~ 1099 (1156)
.........- +.+.+...+ --..+. +++++++...+|+ ++|++..+. .+.+++.. .
T Consensus 76 ~ild~~~~~~~~~~~~------~~~~s~g~~~~~~~i~L~~~~e~l~~R~~~r~~d~---~ld~~~~~~-~~~~~~~~~~ 145 (189)
T 2bdt_A 76 VVLDYIAFPDEAEALA------QTVQAKVDDVEIRFIILWTNREELLRRDALRKKDE---QMGERCLEL-VEEFESKGID 145 (189)
T ss_dssp EEEESCCCHHHHHHHH------HHHHHHCSSEEEEEEEEECCHHHHHHHTTTSCC-------CGGGGHH-HHHHHHTTCC
T ss_pred EEEeeccCHHHHHHHH------HHHHhcccCCCeEEEEEeCCHHHHHHHHHhccccc---cCCHHHHHH-HHHHhhcCCC
Confidence 0111110000 000000000 001133 6777777777784 789887766 67776654 3
Q ss_pred CceEEEeecC-cccccc-cCEEEEEeCcEEeeecChhHHh
Q 037346 1100 DCTVVTIAHR-ITSVLD-SAMVLLLNHGLIKEYDSPTKLL 1137 (1156)
Q Consensus 1100 ~~TvI~IaHr-l~ti~~-~D~I~Vl~~G~IvE~G~~~eLl 1137 (1156)
+.|+|..+|. ++++.. ||+|+ ++|+++..|+++-|-
T Consensus 146 ~~~ii~tsh~~~~~~e~~~~~i~--~~g~~~~~~~~~~~~ 183 (189)
T 2bdt_A 146 ERYFYNTSHLQPTNLNDIVKNLK--TNPRFIFCMAGDPLE 183 (189)
T ss_dssp TTSEEECSSSCGGGHHHHHHHHH--HCGGGSCC-------
T ss_pred ccEEEeCCCCChhhHHHHHHHHh--hCCcEEEeecCCchh
Confidence 5799999999 888765 99998 999999999987764
|
| >3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A* | Back alignment and structure |
|---|
Probab=98.83 E-value=1.5e-09 Score=112.28 Aligned_cols=105 Identities=16% Similarity=0.158 Sum_probs=70.7
Q ss_pred CCCceeeCCCCCCHHHHHHHHhhcccCCCce-EEEcCeeCCCCChHHHhhcCeeeccccccccccchhccCCCCCCCHHH
Q 037346 960 NLPLVLRGRTGSGKSTLIQTLFRIVESTAGH-ILIDGKDISLIGLHDLRTRLSIIPQDPTMFEGTTRSNLDPLEEHADEQ 1038 (1156)
Q Consensus 960 ~~~~vL~G~SGsGKSTL~~lL~rl~~p~~G~-I~idG~di~~i~~~~LR~~i~~VpQdp~LF~gTIr~Nl~~~~~~~dee 1038 (1156)
+..+.|.||+|+|||||++++.+.+.|.+|. +.+ ++..++ -++
T Consensus 38 g~~~~l~G~~G~GKTtL~~~i~~~~~~~~g~~~~~-------~~~~~~-----------------------------~~~ 81 (180)
T 3ec2_A 38 GKGLTFVGSPGVGKTHLAVATLKAIYEKKGIRGYF-------FDTKDL-----------------------------IFR 81 (180)
T ss_dssp CCEEEECCSSSSSHHHHHHHHHHHHHHHSCCCCCE-------EEHHHH-----------------------------HHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHHHHcCCeEEE-------EEHHHH-----------------------------HHH
Confidence 3456788999999999999999999877663 111 001110 011
Q ss_pred HHHHHHHcCCChHHHhhcCCccccccccccCCCEEEEecCCc-CCCHHHHHHHHHHHHHhc-CCceEEEeecCccc
Q 037346 1039 IWEALDKCQLGDEVRKKKGKLDSQGRVLLKKSKVLVLDEATA-SVDTATDNQIQQTLRQHF-SDCTVVTIAHRITS 1112 (1156)
Q Consensus 1039 i~~al~~~~l~~~i~~lp~gl~s~ARALLr~~~ILiLDEaTS-~LD~~te~~I~~~l~~~~-~~~TvI~IaHrl~t 1112 (1156)
+......-... .....+.+|++||||||++ ++|+.....+.+.+.+.. +++|+|++||....
T Consensus 82 ~~~~~~~~~~~------------~~~~~~~~~~llilDE~~~~~~~~~~~~~l~~ll~~~~~~~~~ii~tsn~~~~ 145 (180)
T 3ec2_A 82 LKHLMDEGKDT------------KFLKTVLNSPVLVLDDLGSERLSDWQRELISYIITYRYNNLKSTIITTNYSLQ 145 (180)
T ss_dssp HHHHHHHTCCS------------HHHHHHHTCSEEEEETCSSSCCCHHHHHHHHHHHHHHHHTTCEEEEECCCCSC
T ss_pred HHHHhcCchHH------------HHHHHhcCCCEEEEeCCCCCcCCHHHHHHHHHHHHHHHHcCCCEEEEcCCChh
Confidence 22222211111 1223355899999999996 899999999998887765 68899999998643
|
| >1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A* | Back alignment and structure |
|---|
Probab=98.82 E-value=5e-11 Score=134.48 Aligned_cols=61 Identities=18% Similarity=0.241 Sum_probs=56.0
Q ss_pred ccEEEeeeEEEeCCCCCCCccccceEEe-------------------eCCeEEEEEcCCCCChHHHHHHHhCCCC--CCC
Q 037346 356 TAIEIIDGSFSWDFSSPNPTLRNINLKV-------------------FHGMRVAVCGTVGSGKSSCLSCILGGVP--KES 414 (1156)
Q Consensus 356 ~~i~~~~~~f~~~~~~~~~~l~~i~l~i-------------------~~g~~~~ivG~~GsGKSTll~~i~g~~~--~~~ 414 (1156)
..|+++|+++.|. ++++++++.+ ++|++++|+||||||||||+++|.|++. |++
T Consensus 36 ~~i~~~~v~~~y~-----~~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~g~iigI~G~~GsGKSTl~~~L~~~l~~~~~~ 110 (308)
T 1sq5_A 36 EDLSLEEVAEIYL-----PLSRLLNFYISSNLRRQAVLEQFLGTNGQRIPYIISIAGSVAVGKSTTARVLQALLSRWPEH 110 (308)
T ss_dssp TTCCHHHHHHTHH-----HHHHHHHHHHHHHHHHHHHHHHHHTCC-CCCCEEEEEEECTTSSHHHHHHHHHHHHTTSTTC
T ss_pred cccchHhHHHHHH-----HHHHHHHHHHhhhhhHHHHHHHHhccCCCCCCEEEEEECCCCCCHHHHHHHHHHHHhhCCCC
Confidence 4588999999994 5899999988 9999999999999999999999999988 999
Q ss_pred cEEEE---cC
Q 037346 415 GIIRL---CG 421 (1156)
Q Consensus 415 G~i~~---~g 421 (1156)
|+|.+ +|
T Consensus 111 G~i~vi~~d~ 120 (308)
T 1sq5_A 111 RRVELITTDG 120 (308)
T ss_dssp CCEEEEEGGG
T ss_pred CeEEEEecCC
Confidence 99988 76
|
| >1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6 | Back alignment and structure |
|---|
Probab=98.81 E-value=1.1e-10 Score=129.93 Aligned_cols=106 Identities=15% Similarity=0.151 Sum_probs=68.9
Q ss_pred ceeeCCCCCCHHHHHHHHhhcccCCCceEEEcCeeCCCCChHHHhhcCeeeccccccccccchhccCCC-----------
Q 037346 963 LVLRGRTGSGKSTLIQTLFRIVESTAGHILIDGKDISLIGLHDLRTRLSIIPQDPTMFEGTTRSNLDPL----------- 1031 (1156)
Q Consensus 963 ~vL~G~SGsGKSTL~~lL~rl~~p~~G~I~idG~di~~i~~~~LR~~i~~VpQdp~LF~gTIr~Nl~~~----------- 1031 (1156)
++|.|+||||||||+++|.+++.+. | . . ++.+.+|+||+++|++++++|+...
T Consensus 34 i~I~G~sGsGKSTla~~L~~~l~~~-g------~--------~-~~~~~iv~~D~f~~~~~~~~~l~~~~~~~~l~~~~g 97 (290)
T 1odf_A 34 IFFSGPQGSGKSFTSIQIYNHLMEK-Y------G--------G-EKSIGYASIDDFYLTHEDQLKLNEQFKNNKLLQGRG 97 (290)
T ss_dssp EEEECCTTSSHHHHHHHHHHHHHHH-H------G--------G-GSCEEEEEGGGGBCCHHHHHHHHHHTTTCGGGSSSC
T ss_pred EEEECCCCCCHHHHHHHHHHHhhhc-C------C--------C-CceEEEeccccccCChHHHHHHhccccccchhhhcc
Confidence 5788999999999999999999864 2 0 1 4556667999999999999997321
Q ss_pred CC--CCHHHHHHHHHHcCCC------hHH------HhhcCCccc-----cccccccCCCEEEEecCCcCCCHHH
Q 037346 1032 EE--HADEQIWEALDKCQLG------DEV------RKKKGKLDS-----QGRVLLKKSKVLVLDEATASVDTAT 1086 (1156)
Q Consensus 1032 ~~--~~deei~~al~~~~l~------~~i------~~lp~gl~s-----~ARALLr~~~ILiLDEaTS~LD~~t 1086 (1156)
.+ +..+.+.+.++...-. +.+ ..+.+|-.. .+|++ +|+|||+||+|+++|+++
T Consensus 98 ~p~a~d~~~l~~~l~~l~~g~~t~~~~~v~~p~y~~~~sgGq~~R~~~a~~~~~--~~~IlIlEG~~~~ld~~~ 169 (290)
T 1odf_A 98 LPGTHDMKLLQEVLNTIFNNNEHPDQDTVVLPKYDKSQFKGEGDRCPTGQKIKL--PVDIFILEGWFLGFNPIL 169 (290)
T ss_dssp STTSBCHHHHHHHHHHHTC------CCEEEECCEETTHHHHTCEECSSCEEEES--SCSEEEEEESSTTCCCCC
T ss_pred CcchhHHHHHHHHHHHhhccCccccCcceeeccCccccCCccccccccccceEc--CCCEEEEeCccccCCccc
Confidence 11 2234444444443221 000 000001011 13666 899999999999999865
|
| >3kta_B Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xew_Y 1xex_B* | Back alignment and structure |
|---|
Probab=98.78 E-value=7.1e-09 Score=105.79 Aligned_cols=64 Identities=16% Similarity=0.295 Sum_probs=57.7
Q ss_pred ccccc----cCCCEEEEecCCcCCCHHHHHHHHHHHHHhcCCceEEEeecCcccccccCEEEEE--eCcE
Q 037346 1063 GRVLL----KKSKVLVLDEATASVDTATDNQIQQTLRQHFSDCTVVTIAHRITSVLDSAMVLLL--NHGL 1126 (1156)
Q Consensus 1063 ARALL----r~~~ILiLDEaTS~LD~~te~~I~~~l~~~~~~~TvI~IaHrl~ti~~~D~I~Vl--~~G~ 1126 (1156)
||+++ ++|+++||||||++||+.+.+.+.+.|++..++.|+|+|+|+..++..||+|+++ ++|.
T Consensus 76 a~~la~~~~~~~~~llLDEp~a~LD~~~~~~~~~~l~~~~~~~~~ivith~~~~~~~ad~i~~v~~~~g~ 145 (173)
T 3kta_B 76 AFVFAIQKFKPAPFYLFDEIDAHLDDANVKRVADLIKESSKESQFIVITLRDVMMANADKIIGVSMRDGV 145 (173)
T ss_dssp HHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHHHHHTTTSEEEEECSCHHHHTTCSEEEEEEEETTE
T ss_pred HHHHHhcccCCCCEEEECCCccCCCHHHHHHHHHHHHHhccCCEEEEEEecHHHHHhCCEEEEEEecCCE
Confidence 78885 5679999999999999999999999999988889999999999999999999855 5664
|
| >1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2 | Back alignment and structure |
|---|
Probab=98.74 E-value=7e-11 Score=136.17 Aligned_cols=155 Identities=12% Similarity=0.143 Sum_probs=104.4
Q ss_pred EeeCCeEEEEEcCCCCChHHHHHHHhC------------CCCCCCcEEEEcC-----------------eEEEEecCCcC
Q 037346 382 KVFHGMRVAVCGTVGSGKSSCLSCILG------------GVPKESGIIRLCG-----------------TKAYVAQSPWI 432 (1156)
Q Consensus 382 ~i~~g~~~~ivG~~GsGKSTll~~i~g------------~~~~~~G~i~~~g-----------------~~~~v~Q~~~~ 432 (1156)
++++|..++|+|+||+|||||+++|+| ...|+.|.+.++| ...++.+.|-+
T Consensus 16 ~v~~g~~vgiVG~pnaGKSTL~n~Ltg~~~a~~~~~p~tTi~p~~G~v~v~~~r~~~l~~~~~~~~~v~~~i~lvD~pGl 95 (392)
T 1ni3_A 16 RPGNNLKTGIVGMPNVGKSTFFRAITKSVLGNPANYPYATIDPEEAKVAVPDERFDWLCEAYKPKSRVPAFLTVFDIAGL 95 (392)
T ss_dssp SSSSCCEEEEEECSSSSHHHHHHHHHHSTTTSTTCCSSCCCCTTEEEEEECCHHHHHHHHHHCCSEEECEEEEEECTGGG
T ss_pred cccCCCEEEEECCCCCCHHHHHHHHHCCCcccccCCCceeecceeeeeeeCCcchhhhhhhcccccccCcceEEEecccc
Confidence 567899999999999999999999999 5678999999987 23577777766
Q ss_pred CCc-cHHHHhhcCCCCCHHHHHHHHHHhC-CchhhhhCCCCCccccccCCCCCCHHHHHHHHHHHhhccCC--CeeeeeC
Q 037346 433 QSG-KIEENILFGKEMDRERYERVLEACS-LKKDLEVLPFGDQTIIGERGINLSGGQKQRIQIARPLYQDA--DIFLLDD 508 (1156)
Q Consensus 433 ~~~-ti~eni~~~~~~~~~~~~~~~~~~~-l~~~~~~~~~g~~t~v~~~g~~LSgGqkqRi~lAral~~~~--~illlDe 508 (1156)
..+ +..|++ . ..+...++.+. +-..++... ......+||+. +| |+.++||
T Consensus 96 ~~~~s~~e~L------~-~~fl~~ir~~d~il~Vvd~~~-------d~~i~~v~~~~------------dP~~di~ilde 149 (392)
T 1ni3_A 96 TKGASTGVGL------G-NAFLSHVRAVDAIYQVVRAFD-------DAEIIHVEGDV------------DPIRDLSIIVD 149 (392)
T ss_dssp CCCCCSSSSS------C-HHHHHHHTTCSEEEEEEECCC-------TTCSSCCSSSS------------CHHHHHHHHHH
T ss_pred ccCCcHHHHH------H-HHHHHHHHHHHHHHHHHhccc-------cceeeeecccc------------Ccchhhhhchh
Confidence 543 333322 1 11222222222 111111111 12223355542 89 9999999
Q ss_pred CCCCcCHHHHHHHHHHHHh---cCCCEEEEEccCCCccc-cCCEEE-EEeCC-eEEEccChH
Q 037346 509 PFSPVDDHTGAHLFKFCWV---SSSKTVIYATHQVEFLP-AADLIL-VIKDG-KITQAGKYS 564 (1156)
Q Consensus 509 p~s~lD~~~~~~i~~~~~~---~~~~tvi~vtH~~~~~~-~~d~i~-~l~~G-~i~~~g~~~ 564 (1156)
|++.+|+...++.++.+.. ..|+|++ +|..+.+. .||++. +|++| +++..|+.+
T Consensus 150 el~~~D~~~~~k~~~~l~~~~~~~g~ti~--sh~~~~~~~l~~~i~~~L~~G~~~~~~~~~~ 209 (392)
T 1ni3_A 150 ELLIKDAEFVEKHLEGLRKITSRGANTLE--MKAKKEEQAIIEKVYQYLTETKQPIRKGDWS 209 (392)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCCSSCSSS--HHHHHHHHHHHHHHHHHHHTTCSCGGGSCCC
T ss_pred hhHHHHHHHHHHHHHHHHHHHHhcCCccc--cccHHHHHHHHHHHHHHhccCCceeecCCCC
Confidence 9999999988777665433 2356643 99987765 499999 89999 888767654
|
| >1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A | Back alignment and structure |
|---|
Probab=98.73 E-value=4e-10 Score=113.57 Aligned_cols=74 Identities=14% Similarity=0.203 Sum_probs=58.9
Q ss_pred EEEEEEEEcCCCCceeeCCCCCCHHHHHHHHhhcccCCCceEEEcCeeCCCCChHHHhhcCeeeccccccccccchhccC
Q 037346 950 IRHLQVRYAPNLPLVLRGRTGSGKSTLIQTLFRIVESTAGHILIDGKDISLIGLHDLRTRLSIIPQDPTMFEGTTRSNLD 1029 (1156)
Q Consensus 950 ~~~Vsf~Y~~~~~~vL~G~SGsGKSTL~~lL~rl~~p~~G~I~idG~di~~i~~~~LR~~i~~VpQdp~LF~gTIr~Nl~ 1029 (1156)
+++|+|..++++.++|.|++|||||||+++|.|+. |++|+|.++|.++.+. ...+ .+++|++.+|.-|+.+|+.
T Consensus 23 l~~vsl~i~~Ge~v~L~G~nGaGKTTLlr~l~g~l-~~~G~V~~~g~~i~~~--~~~~---~~~~q~~~l~~ltv~e~l~ 96 (158)
T 1htw_A 23 EILLKLHTEKAIMVYLNGDLGAGKTTLTRGMLQGI-GHQGNVKSPTYTLVEE--YNIA---GKMIYHFDLYRLADPEELE 96 (158)
T ss_dssp HHHHHHCCSSCEEEEEECSTTSSHHHHHHHHHHHT-TCCSCCCCCTTTCEEE--EEET---TEEEEEEECTTCSCTTHHH
T ss_pred HhccccccCCCCEEEEECCCCCCHHHHHHHHHHhC-CCCCeEEECCEeeeee--ccCC---CcceeccccccCCcHHHHH
Confidence 34455566667777899999999999999999999 9999999999888531 1112 2799999888778888874
|
| >1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8 | Back alignment and structure |
|---|
Probab=98.71 E-value=6.8e-09 Score=116.54 Aligned_cols=97 Identities=11% Similarity=0.105 Sum_probs=64.1
Q ss_pred CCCceeeCCCCCCHHHHHHHHhhcccCCCceEEE---cCeeCCCCChHHHhhcCeeeccccc----------------cc
Q 037346 960 NLPLVLRGRTGSGKSTLIQTLFRIVESTAGHILI---DGKDISLIGLHDLRTRLSIIPQDPT----------------MF 1020 (1156)
Q Consensus 960 ~~~~vL~G~SGsGKSTL~~lL~rl~~p~~G~I~i---dG~di~~i~~~~LR~~i~~VpQdp~----------------LF 1020 (1156)
++..+|.|+||||||||+++|.|+..|++|+|.+ +|.++........++.+++|+|+|. +|
T Consensus 169 geiv~l~G~sG~GKSTll~~l~g~~~~~~G~i~~~~~~g~~~t~~~~~~~~~~~g~v~q~p~~~~~~~~~~~~~~~~~l~ 248 (301)
T 1u0l_A 169 GKISTMAGLSGVGKSSLLNAINPGLKLRVSEVSEKLQRGRHTTTTAQLLKFDFGGYVVDTPGFANLEINDIEPEELKHYF 248 (301)
T ss_dssp SSEEEEECSTTSSHHHHHHHHSTTCCCC-------------CCCSCCEEECTTSCEEESSCSSTTCCCCSSCHHHHGGGS
T ss_pred CCeEEEECCCCCcHHHHHHHhcccccccccceecccCCCCCceeeeEEEEcCCCCEEEECcCCCccCCCcCCHHHHHHHH
Confidence 3446789999999999999999999999999999 9999877552211246999999984 35
Q ss_pred cc-cchhccCCCC----CCCHHHHHHHHHHcCCC-hHHHhhcC
Q 037346 1021 EG-TTRSNLDPLE----EHADEQIWEALDKCQLG-DEVRKKKG 1057 (1156)
Q Consensus 1021 ~g-TIr~Nl~~~~----~~~deei~~al~~~~l~-~~i~~lp~ 1057 (1156)
.. |+ +|+.+.. ...+..+.++|+.++|. +.....|.
T Consensus 249 ~~~~~-~n~~~~~~~~~~e~~~~v~~~l~~~~L~~~~~~~~~~ 290 (301)
T 1u0l_A 249 KEFGD-KQCFFSDCNHVDEPECGVKEAVENGEIAESRYENYVK 290 (301)
T ss_dssp TTSSS-CCCSSTTCCSSSCSSCHHHHHHHHTSSCHHHHHHHHH
T ss_pred Hhccc-ccCcCCCCcCCCCCCcHHHHHHHcCCCCHHHHHHHHH
Confidence 43 77 8887532 12346799999999995 55555554
|
| >3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP} | Back alignment and structure |
|---|
Probab=98.70 E-value=1.4e-10 Score=123.19 Aligned_cols=132 Identities=17% Similarity=0.182 Sum_probs=77.7
Q ss_pred CCceeeCCCCCCHHHHHHHHhhcccCCCceEEEcCeeCCCCChHHHhhcCeeeccccccccccchhccCCC------CCC
Q 037346 961 LPLVLRGRTGSGKSTLIQTLFRIVESTAGHILIDGKDISLIGLHDLRTRLSIIPQDPTMFEGTTRSNLDPL------EEH 1034 (1156)
Q Consensus 961 ~~~vL~G~SGsGKSTL~~lL~rl~~p~~G~I~idG~di~~i~~~~LR~~i~~VpQdp~LF~gTIr~Nl~~~------~~~ 1034 (1156)
..++|.|+||||||||+++|.|+++|. | ..+++|+||.+.++.+.++|+... ..+
T Consensus 23 ~~v~I~G~sGsGKSTl~~~l~~~~~~~-g------------------~~~g~v~~d~~~~~~~~~~~~~~~~~~~~~~~~ 83 (208)
T 3c8u_A 23 QLVALSGAPGSGKSTLSNPLAAALSAQ-G------------------LPAEVVPMDGFHLDNRLLEPRGLLPRKGAPETF 83 (208)
T ss_dssp EEEEEECCTTSCTHHHHHHHHHHHHHT-T------------------CCEEEEESGGGBCCHHHHGGGTCGGGTTSGGGB
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHhhc-C------------------CceEEEecCCCcCCHHHHHHhcccccCCCCchh
Confidence 345789999999999999999999975 4 246777777777777776665321 112
Q ss_pred CHHHHHHHHHHcCCChHH--------HhhcCCcc---ccc-cccccCCCEEEEecCC-----------cCCCHHHHHHHH
Q 037346 1035 ADEQIWEALDKCQLGDEV--------RKKKGKLD---SQG-RVLLKKSKVLVLDEAT-----------ASVDTATDNQIQ 1091 (1156)
Q Consensus 1035 ~deei~~al~~~~l~~~i--------~~lp~gl~---s~A-RALLr~~~ILiLDEaT-----------S~LD~~te~~I~ 1091 (1156)
..+.+.+.+......+.+ ...+.|.. ..| |+++.++.++++|||. ..+|...+..++
T Consensus 84 ~~~~~~~~l~~l~~~~~i~~p~~d~~~~~~~g~~~~v~~~~~~~i~eg~~~l~de~~~~~l~~~~d~~i~vd~~~~~~~~ 163 (208)
T 3c8u_A 84 DFEGFQRLCHALKHQERVIYPLFDRARDIAIAGAAEVGPECRVAIIEGNYLLFDAPGWRDLTAIWDVSIRLEVPMADLEA 163 (208)
T ss_dssp CHHHHHHHHHHHHHCSCEEEEEEETTTTEEEEEEEEECTTCCEEEEEESSTTBCSTTGGGGGGTCSEEEEECCCHHHHHH
T ss_pred hHHHHHHHHHHHhcCCceecccCCccccCCCCCceEEcCCCcEEEECCceeccCCchhHHHHHhcCEEEEEeCCHHHHHH
Confidence 233333333322111111 00111100 114 7778888888888874 346766776666
Q ss_pred HHHHHhc-CCceEEEeecCcc
Q 037346 1092 QTLRQHF-SDCTVVTIAHRIT 1111 (1156)
Q Consensus 1092 ~~l~~~~-~~~TvI~IaHrl~ 1111 (1156)
+.+++.. .+.|.-.+.||..
T Consensus 164 R~~~R~~~~g~t~~~~~~~~~ 184 (208)
T 3c8u_A 164 RLVQRWLDHGLNHDAAVARAQ 184 (208)
T ss_dssp HHHHHHHHTTCCHHHHHHHHH
T ss_pred HHHHHHHhcCCCHHHHHHHHH
Confidence 6666543 2555555555543
|
| >3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum} | Back alignment and structure |
|---|
Probab=98.69 E-value=6.4e-11 Score=127.94 Aligned_cols=139 Identities=13% Similarity=0.137 Sum_probs=59.8
Q ss_pred EEEEEEEcCCCCceeeCCCCCCHHHHHHHHh-hcc------------cCCCceEEEcCeeCCCCChHHHhhcCeeecccc
Q 037346 951 RHLQVRYAPNLPLVLRGRTGSGKSTLIQTLF-RIV------------ESTAGHILIDGKDISLIGLHDLRTRLSIIPQDP 1017 (1156)
Q Consensus 951 ~~Vsf~Y~~~~~~vL~G~SGsGKSTL~~lL~-rl~------------~p~~G~I~idG~di~~i~~~~LR~~i~~VpQdp 1017 (1156)
++|||.-+++..++|.||||||||||+++|. +++ +|..|.+ +|++....+...++.. +.++.
T Consensus 18 ~~~sl~v~~G~ii~l~Gp~GsGKSTl~~~L~~~~~~~~~~~~~~~~~~~~~g~~--~g~~~~~~~~~~~~~~---~~~~~ 92 (231)
T 3lnc_A 18 GPGSMLKSVGVILVLSSPSGCGKTTVANKLLEKQKNNIVKSVSVTTRAARKGEK--EGKDYYFVDREEFLRL---CSNGE 92 (231)
T ss_dssp ----CCEECCCEEEEECSCC----CHHHHHHC----CEEECCCEESSCCCTTCC--BTTTBEECCHHHHHHH---HHTTC
T ss_pred CCCCcccCCCCEEEEECCCCCCHHHHHHHHHhcCCCCcccccccCCCCCCcccc--CCCeEEEecHHHhhhh---hhcCc
Confidence 5678888888888999999999999999999 998 4445543 4433333333333321 12333
Q ss_pred ccccccchhccCCCCCCCHHHHHHHHHHcCC---C---hHHHhhcCCc-cccccccccCCCEEEEecCCcCCCHHHHHHH
Q 037346 1018 TMFEGTTRSNLDPLEEHADEQIWEALDKCQL---G---DEVRKKKGKL-DSQGRVLLKKSKVLVLDEATASVDTATDNQI 1090 (1156)
Q Consensus 1018 ~LF~gTIr~Nl~~~~~~~deei~~al~~~~l---~---~~i~~lp~gl-~s~ARALLr~~~ILiLDEaTS~LD~~te~~I 1090 (1156)
+++.+++..|+. +. ..+++.++++.... + .....+...+ +.....++..|+..++||.+++.|..+++.+
T Consensus 93 ~~~~~~~~~~~~-~~--~~~~i~~~~~~~~~vild~~~~g~~~~~~~~~~~~~~v~v~~~~~~~l~~Rl~~R~~~~~~~i 169 (231)
T 3lnc_A 93 IIEHAEVFGNFY-GV--PRKNLEDNVDKGVSTLLVIDWQGAFKFMEMMREHVVSIFIMPPSMEELRRRLCGRRADDSEVV 169 (231)
T ss_dssp EEEEEEETTEEE-EE--ECTTHHHHHHHTCEEEEECCHHHHHHHHHHSGGGEEEEEEECSCHHHHHHC------------
T ss_pred eehhhhhccccC-CC--CHHHHHHHHHcCCeEEEEcCHHHHHHHHHhcCCCeEEEEEECCcHHHHHHHHHHcCCCCHHHH
Confidence 333444444441 11 12334455544221 0 0011111222 1223455778889999999999999999888
Q ss_pred HHHHHHh
Q 037346 1091 QQTLRQH 1097 (1156)
Q Consensus 1091 ~~~l~~~ 1097 (1156)
++.|++.
T Consensus 170 ~~rl~~~ 176 (231)
T 3lnc_A 170 EARLKGA 176 (231)
T ss_dssp --CHHHH
T ss_pred HHHHHHH
Confidence 8777643
|
| >1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A* | Back alignment and structure |
|---|
Probab=98.68 E-value=2.1e-09 Score=115.49 Aligned_cols=113 Identities=17% Similarity=0.230 Sum_probs=88.5
Q ss_pred CceeeCCCCCCHHHHHHHHhhcc---cCCCceEEE--------cCeeCCC-CChHHHhhcCeeecccc------cccccc
Q 037346 962 PLVLRGRTGSGKSTLIQTLFRIV---ESTAGHILI--------DGKDISL-IGLHDLRTRLSIIPQDP------TMFEGT 1023 (1156)
Q Consensus 962 ~~vL~G~SGsGKSTL~~lL~rl~---~p~~G~I~i--------dG~di~~-i~~~~LR~~i~~VpQdp------~LF~gT 1023 (1156)
.++|.|++||||||++++|.+.+ .++.|.|.. +|.++.+ ....++++++++++|++ .++..+
T Consensus 7 ~i~i~G~~GsGKSTl~~~L~~~~g~~~~d~g~i~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 86 (227)
T 1cke_A 7 VITIDGPSGAGKGTLCKAMAEALQWHLLDSGAIYRVLALAALHHHVDVASEDALVPLASHLDVRFVSTNGNLEVILEGED 86 (227)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHTCEEEEHHHHHHHHHHHHHHHTCCTTCHHHHHHHHHTCCEEEEEETTEEEEEETTEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCCcccCcceeehhhHHHHHcCCCccCHHHHHHHHHhCceeeeccCCCceEEECCee
Confidence 36789999999999999999887 788999988 7888763 56778999999999987 455556
Q ss_pred chhccCCCCCCCHHHHHHHHHHcCCChHHHhhcCCcc--------------ccccccccCCCEEEEecCCc
Q 037346 1024 TRSNLDPLEEHADEQIWEALDKCQLGDEVRKKKGKLD--------------SQGRVLLKKSKVLVLDEATA 1080 (1156)
Q Consensus 1024 Ir~Nl~~~~~~~deei~~al~~~~l~~~i~~lp~gl~--------------s~ARALLr~~~ILiLDEaTS 1080 (1156)
+.+++. ++++.+++..+..++.+.....+.. ..+++++++++++|+.+++.
T Consensus 87 v~~~~~------~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~vldg~~~~~~~~~~~d~~i~l~~~~ 151 (227)
T 1cke_A 87 VSGEIR------TQEVANAASQVAAFPRVREALLRRQRAFRELPGLIADGRDMGTVVFPDAPVKIFLDASS 151 (227)
T ss_dssp CHHHHT------SHHHHHHHHHHTTCHHHHHHHHHHHHTTCCTTCEEEEESSCCCCCCTTCSEEEEEECCH
T ss_pred CchhhC------CHHHHHHHHHhcCCHHHHHHHHHHHHHHHhCCCEEEECCCccceEecCCCEEEEEeCCH
Confidence 666653 6789999999999988876432211 11567888999999988864
|
| >1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10 | Back alignment and structure |
|---|
Probab=98.62 E-value=1.3e-08 Score=113.85 Aligned_cols=98 Identities=16% Similarity=0.172 Sum_probs=69.9
Q ss_pred ceEEeeCCeEEEEEcCCCCChHHHHHHHhCCCCCCCcEEEEcCeEEEEecCCcCCCccHHHHhhcCCCCCHHHHHHHHHH
Q 037346 379 INLKVFHGMRVAVCGTVGSGKSSCLSCILGGVPKESGIIRLCGTKAYVAQSPWIQSGKIEENILFGKEMDRERYERVLEA 458 (1156)
Q Consensus 379 i~l~i~~g~~~~ivG~~GsGKSTll~~i~g~~~~~~G~i~~~g~~~~v~Q~~~~~~~ti~eni~~~~~~~~~~~~~~~~~ 458 (1156)
+++..++|++++|+|+|||||||++..|++.+.+..|+|.+. ..++ +.....+ ......+.
T Consensus 97 ~~~~~~~~~vi~ivG~~GsGKTTl~~~LA~~l~~~g~kV~lv------~~D~--~r~~a~e-----------qL~~~~~~ 157 (306)
T 1vma_A 97 LNVPPEPPFVIMVVGVNGTGKTTSCGKLAKMFVDEGKSVVLA------AADT--FRAAAIE-----------QLKIWGER 157 (306)
T ss_dssp CCCCSSSCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEE------EECT--TCHHHHH-----------HHHHHHHH
T ss_pred CcccCCCCeEEEEEcCCCChHHHHHHHHHHHHHhcCCEEEEE------cccc--ccHHHHH-----------HHHHHHHH
Confidence 455677899999999999999999999999998877766553 3332 1111111 12223333
Q ss_pred hCCchhhhhCCCCCccccccCCCCCCHHHHHHH---HHHHhhccCCCeeeeeCCCC
Q 037346 459 CSLKKDLEVLPFGDQTIIGERGINLSGGQKQRI---QIARPLYQDADIFLLDDPFS 511 (1156)
Q Consensus 459 ~~l~~~~~~~~~g~~t~v~~~g~~LSgGqkqRi---~lAral~~~~~illlDep~s 511 (1156)
.++.. ...+|||+.|++ ++++|+..++|++|+|+|..
T Consensus 158 ~gl~~----------------~~~~s~~~~~~v~~~al~~a~~~~~dvvIiDtpg~ 197 (306)
T 1vma_A 158 VGATV----------------ISHSEGADPAAVAFDAVAHALARNKDVVIIDTAGR 197 (306)
T ss_dssp HTCEE----------------ECCSTTCCHHHHHHHHHHHHHHTTCSEEEEEECCC
T ss_pred cCCcE----------------EecCCccCHHHHHHHHHHHHHhcCCCEEEEECCCc
Confidence 33321 124689999999 99999999999999999974
|
| >1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8 | Back alignment and structure |
|---|
Probab=98.61 E-value=4.8e-09 Score=116.97 Aligned_cols=82 Identities=24% Similarity=0.279 Sum_probs=51.7
Q ss_pred EEeeCCeEEEEEcCCCCChHHHHHHHhCCCCCCCcEEEE---cCe------------EEEEecCCcCCC-----ccHHHH
Q 037346 381 LKVFHGMRVAVCGTVGSGKSSCLSCILGGVPKESGIIRL---CGT------------KAYVAQSPWIQS-----GKIEEN 440 (1156)
Q Consensus 381 l~i~~g~~~~ivG~~GsGKSTll~~i~g~~~~~~G~i~~---~g~------------~~~v~Q~~~~~~-----~ti~en 440 (1156)
+++.+|++++|+||||+|||||+++|+|..+|..|+|.+ +|+ .+|++|+|-+.. .|+ ||
T Consensus 168 ~~~~~G~~~~lvG~sG~GKSTLln~L~g~~~~~~G~I~~~~~~G~~tt~~~~~~~~~~g~v~dtpg~~~~~l~~lt~-e~ 246 (307)
T 1t9h_A 168 IPHFQDKTTVFAGQSGVGKSSLLNAISPELGLRTNEISEHLGRGKHTTRHVELIHTSGGLVADTPGFSSLEFTDIEE-EE 246 (307)
T ss_dssp GGGGTTSEEEEEESHHHHHHHHHHHHCC-------------------CCCCCEEEETTEEEESSCSCSSCCCTTCCH-HH
T ss_pred HhhcCCCEEEEECCCCCCHHHHHHHhcccccccccceeeecCCCcccccHHHHhhcCCEEEecCCCccccccccCCH-HH
Confidence 567799999999999999999999999999999999987 442 489999997643 477 88
Q ss_pred hh--cCC----------------CCCHHHHHHHHHHhCCch
Q 037346 441 IL--FGK----------------EMDRERYERVLEACSLKK 463 (1156)
Q Consensus 441 i~--~~~----------------~~~~~~~~~~~~~~~l~~ 463 (1156)
+. |.. .......+++++..++.+
T Consensus 247 l~~~f~~~~~~~~~C~f~~c~h~~e~~~~v~~aLe~~~L~~ 287 (307)
T 1t9h_A 247 LGYTFPDIREKSSSCKFRGCLHLKEPKCAVKQAVEDGELKQ 287 (307)
T ss_dssp HGGGSHHHHHHGGGCSSTTCCSSSCSSCHHHHHHHHTSSCH
T ss_pred HHHHHHHHHHHhhhccccCCCCccCHHHHHHHHHHhCCChH
Confidence 83 320 112245667777777754
|
| >1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25 | Back alignment and structure |
|---|
Probab=98.61 E-value=3.7e-09 Score=110.26 Aligned_cols=66 Identities=20% Similarity=0.148 Sum_probs=50.1
Q ss_pred CCCCceeeCCCCCCHHHHHHHHhhcccCCCceEEEcCeeCCCCChHHHhhcCeeeccccccccccchhccC
Q 037346 959 PNLPLVLRGRTGSGKSTLIQTLFRIVESTAGHILIDGKDISLIGLHDLRTRLSIIPQDPTMFEGTTRSNLD 1029 (1156)
Q Consensus 959 ~~~~~vL~G~SGsGKSTL~~lL~rl~~p~~G~I~idG~di~~i~~~~LR~~i~~VpQdp~LF~gTIr~Nl~ 1029 (1156)
++..++|.|++|||||||+++|.+. |..|.|.+||.++..... -++.+++++|++. ...|+++|+.
T Consensus 8 ~g~~i~l~G~~GsGKSTl~~~La~~--~~~g~i~i~~d~~~~~~~--~~~~~~~~~~~~~-~~~~v~~~l~ 73 (191)
T 1zp6_A 8 GGNILLLSGHPGSGKSTIAEALANL--PGVPKVHFHSDDLWGYIK--HGRIDPWLPQSHQ-QNRMIMQIAA 73 (191)
T ss_dssp TTEEEEEEECTTSCHHHHHHHHHTC--SSSCEEEECTTHHHHTCC--SSCCCTTSSSHHH-HHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHhc--cCCCeEEEcccchhhhhh--cccccCCccchhh-hhHHHHHHHH
Confidence 3445688999999999999999998 788999999987643221 1345788999765 4567777763
|
| >1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8 | Back alignment and structure |
|---|
Probab=98.60 E-value=9e-09 Score=115.54 Aligned_cols=88 Identities=19% Similarity=0.212 Sum_probs=61.9
Q ss_pred EEeeCCeEEEEEcCCCCChHHHHHHHhCCCCCCCcEEEE---cC-------------eEEEEecCCcC------------
Q 037346 381 LKVFHGMRVAVCGTVGSGKSSCLSCILGGVPKESGIIRL---CG-------------TKAYVAQSPWI------------ 432 (1156)
Q Consensus 381 l~i~~g~~~~ivG~~GsGKSTll~~i~g~~~~~~G~i~~---~g-------------~~~~v~Q~~~~------------ 432 (1156)
|++.+|++++|+||||||||||+++|+|+.+|+.|+|.+ +| .++|++|+|.+
T Consensus 164 f~~l~geiv~l~G~sG~GKSTll~~l~g~~~~~~G~i~~~~~~g~~~t~~~~~~~~~~~g~v~q~p~~~~~~~~~~~~~~ 243 (301)
T 1u0l_A 164 KEYLKGKISTMAGLSGVGKSSLLNAINPGLKLRVSEVSEKLQRGRHTTTTAQLLKFDFGGYVVDTPGFANLEINDIEPEE 243 (301)
T ss_dssp HHHHSSSEEEEECSTTSSHHHHHHHHSTTCCCC-------------CCCSCCEEECTTSCEEESSCSSTTCCCCSSCHHH
T ss_pred HHHhcCCeEEEECCCCCcHHHHHHHhcccccccccceecccCCCCCceeeeEEEEcCCCCEEEECcCCCccCCCcCCHHH
Confidence 456789999999999999999999999999999999998 55 25899999842
Q ss_pred ----C-CccHHHHhhcCC----CCCHHHHHHHHHHhCCc-hhhhhCC
Q 037346 433 ----Q-SGKIEENILFGK----EMDRERYERVLEACSLK-KDLEVLP 469 (1156)
Q Consensus 433 ----~-~~ti~eni~~~~----~~~~~~~~~~~~~~~l~-~~~~~~~ 469 (1156)
| ..|+ +|+.|+. .....+..++++..+|. +..+..|
T Consensus 244 ~~~l~~~~~~-~n~~~~~~~~~~e~~~~v~~~l~~~~L~~~~~~~~~ 289 (301)
T 1u0l_A 244 LKHYFKEFGD-KQCFFSDCNHVDEPECGVKEAVENGEIAESRYENYV 289 (301)
T ss_dssp HGGGSTTSSS-CCCSSTTCCSSSCSSCHHHHHHHHTSSCHHHHHHHH
T ss_pred HHHHHHhccc-ccCcCCCCcCCCCCCcHHHHHHHcCCCCHHHHHHHH
Confidence 3 3478 9998853 12345678899999995 4344433
|
| >4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis} | Back alignment and structure |
|---|
Probab=98.57 E-value=5.3e-08 Score=106.36 Aligned_cols=90 Identities=19% Similarity=0.180 Sum_probs=73.5
Q ss_pred CCCCceeeCCCCCCHHHHHHHHh---hcccCCCceEE--------EcCeeC-CCCChHHHhhcCeeeccc------cccc
Q 037346 959 PNLPLVLRGRTGSGKSTLIQTLF---RIVESTAGHIL--------IDGKDI-SLIGLHDLRTRLSIIPQD------PTMF 1020 (1156)
Q Consensus 959 ~~~~~vL~G~SGsGKSTL~~lL~---rl~~p~~G~I~--------idG~di-~~i~~~~LR~~i~~VpQd------p~LF 1020 (1156)
++..++|.|++||||||++++|. |++.|++|.|+ .+|.++ .......+++.+++++|+ ..++
T Consensus 26 ~g~~I~I~G~~GsGKSTl~k~La~~Lg~~~~d~g~i~r~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 105 (252)
T 4e22_A 26 IAPVITVDGPSGAGKGTLCKALAESLNWRLLDSGAIYRVLALAALHHQVDISTEEALVPLAAHLDVRFVSQNGQLQVILE 105 (252)
T ss_dssp TSCEEEEECCTTSSHHHHHHHHHHHTTCEEEEHHHHHHHHHHHHHHTTCCSSSSTTHHHHHHTCCEEEEEETTEEEEEET
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHhcCCCcCCCCceehHhHHHHHHcCCCcccHHHHHHHHHcCCEEEecCCCCceEEEC
Confidence 34557899999999999999999 99999999999 999998 456788999999999964 4567
Q ss_pred cccchhccCCCCCCCHHHHHHHHHHcCCChHHHh
Q 037346 1021 EGTTRSNLDPLEEHADEQIWEALDKCQLGDEVRK 1054 (1156)
Q Consensus 1021 ~gTIr~Nl~~~~~~~deei~~al~~~~l~~~i~~ 1054 (1156)
..++.+||. .+++..+...+..++.+..
T Consensus 106 ~~~v~~~i~------~~~v~~~~s~~~~~~~vr~ 133 (252)
T 4e22_A 106 GEDVSNEIR------TETVGNTASQAAAFPRVRE 133 (252)
T ss_dssp TEECTTGGG------SHHHHHHHHHHTTSHHHHH
T ss_pred CeehhHHHH------HHHHHHHHHHhcccHHHHH
Confidence 778888874 3667777777776666654
|
| >3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A* | Back alignment and structure |
|---|
Probab=98.56 E-value=1.9e-08 Score=118.41 Aligned_cols=48 Identities=13% Similarity=0.218 Sum_probs=45.6
Q ss_pred CccccceEEeeCCeEEEEEcCCCCChHHHHHHHhCCCCCCCcEEEEcCe
Q 037346 374 PTLRNINLKVFHGMRVAVCGTVGSGKSSCLSCILGGVPKESGIIRLCGT 422 (1156)
Q Consensus 374 ~~l~~i~l~i~~g~~~~ivG~~GsGKSTll~~i~g~~~~~~G~i~~~g~ 422 (1156)
.+|+|+||+|++ ++++|+||||||||||+++|+|+++|++|+|.++|+
T Consensus 18 ~~l~~vsl~i~~-e~~~liG~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~ 65 (483)
T 3euj_A 18 NGFFARTFDFDE-LVTTLSGGNGAGKSTTMAGFVTALIPDLTLLNFRNT 65 (483)
T ss_dssp TTEEEEEEECCS-SEEEEECCTTSSHHHHHHHHHHHHCCCTTTCCCCCT
T ss_pred ccccceEEEEcc-ceEEEECCCCCcHHHHHHHHhcCCCCCCCEEEECCE
Confidence 479999999999 999999999999999999999999999999998874
|
| >2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A* | Back alignment and structure |
|---|
Probab=98.51 E-value=5.3e-08 Score=108.65 Aligned_cols=137 Identities=12% Similarity=0.098 Sum_probs=85.4
Q ss_pred eCCeEEEEEcCCCCChHHHHHHHhCCCCCCCcEEEEcCeEEEEecCCcCCCccHHHHhhcCCCCCHHHHHHHHHHhCCch
Q 037346 384 FHGMRVAVCGTVGSGKSSCLSCILGGVPKESGIIRLCGTKAYVAQSPWIQSGKIEENILFGKEMDRERYERVLEACSLKK 463 (1156)
Q Consensus 384 ~~g~~~~ivG~~GsGKSTll~~i~g~~~~~~G~i~~~g~~~~v~Q~~~~~~~ti~eni~~~~~~~~~~~~~~~~~~~l~~ 463 (1156)
++|++++++|+|||||||++..|++.+.+.+|. ++.++.++++ ..+..|++.. ..+..++
T Consensus 103 ~~g~vi~lvG~~GsGKTTl~~~LA~~l~~~~G~-----~V~lv~~D~~--r~~a~eqL~~-----------~~~~~gl-- 162 (296)
T 2px0_A 103 IHSKYIVLFGSTGAGKTTTLAKLAAISMLEKHK-----KIAFITTDTY--RIAAVEQLKT-----------YAELLQA-- 162 (296)
T ss_dssp CCSSEEEEEESTTSSHHHHHHHHHHHHHHTTCC-----CEEEEECCCS--STTHHHHHHH-----------HHTTTTC--
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHHHhcCC-----EEEEEecCcc--cchHHHHHHH-----------HHHhcCC--
Confidence 478999999999999999999999999877772 5778888873 3344443321 1111111
Q ss_pred hhhhCCCCCccccccCCCCCCHHHHHHHHHHHhhccCCCeeeeeCCCCCcCHHHHHHHHHH--HHh--cCCCEEEEE--c
Q 037346 464 DLEVLPFGDQTIIGERGINLSGGQKQRIQIARPLYQDADIFLLDDPFSPVDDHTGAHLFKF--CWV--SSSKTVIYA--T 537 (1156)
Q Consensus 464 ~~~~~~~g~~t~v~~~g~~LSgGqkqRi~lAral~~~~~illlDep~s~lD~~~~~~i~~~--~~~--~~~~tvi~v--t 537 (1156)
|. .. ..+ ++..+.+++++ .++|++|+| |+++|+.....+.+. ++. ....+++++ +
T Consensus 163 -----~~----~~-----~~~-~~~l~~al~~~--~~~dlvIiD--T~G~~~~~~~~~~el~~~l~~~~~~~~~lVl~at 223 (296)
T 2px0_A 163 -----PL----EV-----CYT-KEEFQQAKELF--SEYDHVFVD--TAGRNFKDPQYIDELKETIPFESSIQSFLVLSAT 223 (296)
T ss_dssp -----CC----CB-----CSS-HHHHHHHHHHG--GGSSEEEEE--CCCCCTTSHHHHHHHHHHSCCCTTEEEEEEEETT
T ss_pred -----Ce----Ee-----cCC-HHHHHHHHHHh--cCCCEEEEe--CCCCChhhHHHHHHHHHHHhhcCCCeEEEEEECC
Confidence 11 00 012 34567788865 899999999 889998655433221 111 122334444 8
Q ss_pred cCCCcccc-CCEEEEEeCCeEEE
Q 037346 538 HQVEFLPA-ADLILVIKDGKITQ 559 (1156)
Q Consensus 538 H~~~~~~~-~d~i~~l~~G~i~~ 559 (1156)
|..+.+.. ++++..++.+.++.
T Consensus 224 ~~~~~~~~~~~~~~~l~~~giVl 246 (296)
T 2px0_A 224 AKYEDMKHIVKRFSSVPVNQYIF 246 (296)
T ss_dssp BCHHHHHHHTTTTSSSCCCEEEE
T ss_pred CCHHHHHHHHHHHhcCCCCEEEE
Confidence 88655543 66555556666654
|
| >1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A* | Back alignment and structure |
|---|
Probab=98.50 E-value=1.1e-07 Score=106.17 Aligned_cols=128 Identities=16% Similarity=0.031 Sum_probs=83.8
Q ss_pred EEEeeeEEEeCCCCCCCccccceEEeeCCeEEEEEcCCCCChHHHHHHHhCCCCCCCcEEEEcCeEEEEecCCcCCCccH
Q 037346 358 IEIIDGSFSWDFSSPNPTLRNINLKVFHGMRVAVCGTVGSGKSSCLSCILGGVPKESGIIRLCGTKAYVAQSPWIQSGKI 437 (1156)
Q Consensus 358 i~~~~~~f~~~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKSTll~~i~g~~~~~~G~i~~~g~~~~v~Q~~~~~~~ti 437 (1156)
+.++++++.|+. .. ++++|+ +|++++++|++||||||++..|+|.+.+..|+|.+.+ .++. ....
T Consensus 77 ~~~~~l~~~~~~---~~--~~i~~~--~~~~i~i~g~~G~GKTT~~~~la~~~~~~~~~v~l~~------~d~~--~~~~ 141 (295)
T 1ls1_A 77 TVYEALKEALGG---EA--RLPVLK--DRNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVA------ADTQ--RPAA 141 (295)
T ss_dssp HHHHHHHHHTTS---SC--CCCCCC--SSEEEEEECCTTTTHHHHHHHHHHHHHHTTCCEEEEE------CCSS--CHHH
T ss_pred HHHHHHHHHHCC---CC--ceeecC--CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEec------CCcc--cHhH
Confidence 345566666642 11 678887 9999999999999999999999999988777766543 3321 1111
Q ss_pred HHHhhcCCCCCHHHHHHHHHHhCCchhhhhCCCCCccccccCCCCCCHHHHHHHHHHHhhccCCCeeeeeCC-CCCcCHH
Q 037346 438 EENILFGKEMDRERYERVLEACSLKKDLEVLPFGDQTIIGERGINLSGGQKQRIQIARPLYQDADIFLLDDP-FSPVDDH 516 (1156)
Q Consensus 438 ~eni~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~t~v~~~g~~LSgGqkqRi~lAral~~~~~illlDep-~s~lD~~ 516 (1156)
.+ ......+..++. .+|.+ ..-...+.+|.+|+++...++|++|+|+| ++++|..
T Consensus 142 ~~-----------ql~~~~~~~~l~----~~~~~---------~~~~p~~l~~~~l~~~~~~~~D~viiDtpp~~~~d~~ 197 (295)
T 1ls1_A 142 RE-----------QLRLLGEKVGVP----VLEVM---------DGESPESIRRRVEEKARLEARDLILVDTAGRLQIDEP 197 (295)
T ss_dssp HH-----------HHHHHHHHHTCC----EEECC---------TTCCHHHHHHHHHHHHHHHTCCEEEEECCCCSSCCHH
T ss_pred HH-----------HHHHhcccCCeE----EEEcC---------CCCCHHHHHHHHHHHHHhCCCCEEEEeCCCCccccHH
Confidence 11 111122222221 11111 11234456799999998899999999999 9999987
Q ss_pred HHHHHHHH
Q 037346 517 TGAHLFKF 524 (1156)
Q Consensus 517 ~~~~i~~~ 524 (1156)
....+.+.
T Consensus 198 ~~~~l~~~ 205 (295)
T 1ls1_A 198 LMGELARL 205 (295)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 76666443
|
| >2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A* | Back alignment and structure |
|---|
Probab=98.46 E-value=1.4e-07 Score=117.03 Aligned_cols=127 Identities=18% Similarity=0.193 Sum_probs=100.6
Q ss_pred CCCceeeCCCCCCHHHHHHHHhhcccC--CCceEEEcCeeCCCCChHHHhhcCeeeccccccccccchhccC--CCCCCC
Q 037346 960 NLPLVLRGRTGSGKSTLIQTLFRIVES--TAGHILIDGKDISLIGLHDLRTRLSIIPQDPTMFEGTTRSNLD--PLEEHA 1035 (1156)
Q Consensus 960 ~~~~vL~G~SGsGKSTL~~lL~rl~~p--~~G~I~idG~di~~i~~~~LR~~i~~VpQdp~LF~gTIr~Nl~--~~~~~~ 1035 (1156)
+..+++.|++|+|||||++.|++...+ ..|+| .+|.++.+....+.++.+++.+|.+.++.++++.||- |+...-
T Consensus 9 ~~~i~IiG~~gaGKTTLl~~L~~~~~~~~~~G~V-~~g~~~~d~~~~e~~~giti~~~~~~~~~~~~~~nliDTpG~~~f 87 (665)
T 2dy1_A 9 IRTVALVGHAGSGKTTLTEALLYKTGAKERRGRV-EEGTTTTDYTPEAKLHRTTVRTGVAPLLFRGHRVFLLDAPGYGDF 87 (665)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHHTTSSSSCCCG-GGTCCSSCCSHHHHHTTSCCSCEEEEEEETTEEEEEEECCCSGGG
T ss_pred CcEEEEECCCCChHHHHHHHHHHhcCCCCcccee-cCCcccccCCHHHHhcCCeEEecceEEeeCCEEEEEEeCCCccch
Confidence 345688999999999999999987765 78999 8999999999999999999999999999999999983 543222
Q ss_pred HHHHHHHHHHcCCChHHHhhcCCccccccccccCCCEEEEecCCcCCCHHHHHHHHHHHHHhcCCceEEEeecCcccc
Q 037346 1036 DEQIWEALDKCQLGDEVRKKKGKLDSQGRVLLKKSKVLVLDEATASVDTATDNQIQQTLRQHFSDCTVVTIAHRITSV 1113 (1156)
Q Consensus 1036 deei~~al~~~~l~~~i~~lp~gl~s~ARALLr~~~ILiLDEaTS~LD~~te~~I~~~l~~~~~~~TvI~IaHrl~ti 1113 (1156)
..++..+++.+ +.-++++| ||.++|.+++..+..+.. .+.++|++.|+++..
T Consensus 88 ~~~~~~~l~~a----------------------d~~ilVvD-~~~g~~~qt~~~~~~~~~---~~ip~ilv~NKiD~~ 139 (665)
T 2dy1_A 88 VGEIRGALEAA----------------------DAALVAVS-AEAGVQVGTERAWTVAER---LGLPRMVVVTKLDKG 139 (665)
T ss_dssp HHHHHHHHHHC----------------------SEEEEEEE-TTTCSCHHHHHHHHHHHH---TTCCEEEEEECGGGC
T ss_pred HHHHHHHHhhc----------------------CcEEEEEc-CCcccchhHHHHHHHHHH---ccCCEEEEecCCchh
Confidence 34555555543 34688888 999999999876655543 377889999998754
|
| >2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=98.45 E-value=6.1e-08 Score=108.68 Aligned_cols=94 Identities=15% Similarity=0.134 Sum_probs=64.0
Q ss_pred CCCceeeCCCCCCHHHHHHHHhhcccCCCceEEE---cCeeCCCCChHHHh-hcCeeeccccccc------cccchhcc-
Q 037346 960 NLPLVLRGRTGSGKSTLIQTLFRIVESTAGHILI---DGKDISLIGLHDLR-TRLSIIPQDPTMF------EGTTRSNL- 1028 (1156)
Q Consensus 960 ~~~~vL~G~SGsGKSTL~~lL~rl~~p~~G~I~i---dG~di~~i~~~~LR-~~i~~VpQdp~LF------~gTIr~Nl- 1028 (1156)
+...+|.|+||||||||+++|. +.+|.+|+|.+ +|.++..... ..+ +.+++|+|+|-+. .-|+ +|+
T Consensus 165 G~i~~l~G~sG~GKSTLln~l~-~~~~~~G~i~~~~~~G~~~t~~~~-~~~~~~~g~v~d~pg~~~~~l~~~lt~-e~l~ 241 (302)
T 2yv5_A 165 GFICILAGPSGVGKSSILSRLT-GEELRTQEVSEKTERGRHTTTGVR-LIPFGKGSFVGDTPGFSKVEATMFVKP-REVR 241 (302)
T ss_dssp TCEEEEECSTTSSHHHHHHHHH-SCCCCCSCC---------CCCCEE-EEEETTTEEEESSCCCSSCCGGGTSCG-GGGG
T ss_pred CcEEEEECCCCCCHHHHHHHHH-HhhCcccccccccCCCCCceeeEE-EEEcCCCcEEEECcCcCcCcccccCCH-HHHH
Confidence 3445788999999999999999 99999999999 9999876542 223 3699999999542 4477 787
Q ss_pred -CC---------CCC--C---CHHHHHHHHHHcCCCh-HHHhhc
Q 037346 1029 -DP---------LEE--H---ADEQIWEALDKCQLGD-EVRKKK 1056 (1156)
Q Consensus 1029 -~~---------~~~--~---~deei~~al~~~~l~~-~i~~lp 1056 (1156)
.+ +.. + ....+.++++..++.+ .....|
T Consensus 242 ~~f~~~~~~~c~~~~~~~~~e~~~~v~~~l~~~~L~~~~~~~~~ 285 (302)
T 2yv5_A 242 NYFREFLRYQCKYPDCTHTNEPGCAVKEAVKNGEISCERYKSYL 285 (302)
T ss_dssp GGCGGGHHHHHHSTTCCSSSCTTCHHHHHHHTTSSCHHHHHHHH
T ss_pred HHHHHHHHccCCCCCCCCCCCCCCHHHHHHHcCCCCHHHHHHHH
Confidence 22 111 1 2356999999999986 444443
|
| >1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20 | Back alignment and structure |
|---|
Probab=98.44 E-value=1.3e-09 Score=121.14 Aligned_cols=117 Identities=15% Similarity=0.193 Sum_probs=77.2
Q ss_pred EeeeEEEeCCCCCCCccccceEEeeCCeEEEEEcCCCCChHHHHHHHhCCCCCCCcEEEEcCe-------------EEEE
Q 037346 360 IIDGSFSWDFSSPNPTLRNINLKVFHGMRVAVCGTVGSGKSSCLSCILGGVPKESGIIRLCGT-------------KAYV 426 (1156)
Q Consensus 360 ~~~~~f~~~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKSTll~~i~g~~~~~~G~i~~~g~-------------~~~v 426 (1156)
++++.+.|. ...+++++++++++| ++|+||+|||||||+++|+++.. .|.+.+++. ++++
T Consensus 52 l~~l~~~~~---~~~~l~~~~~~~~~g--vll~Gp~GtGKTtl~~~i~~~~~--~~~i~~~~~~~~~~~~~~~~~~i~~~ 124 (278)
T 1iy2_A 52 LKEIVEFLK---NPSRFHEMGARIPKG--VLLVGPPGVGKTHLARAVAGEAR--VPFITASGSDFVEMFVGVGAARVRDL 124 (278)
T ss_dssp HHHHHHHHH---CHHHHHHTTCCCCCE--EEEECCTTSSHHHHHHHHHHHTT--CCEEEEEHHHHHHSTTTHHHHHHHHH
T ss_pred HHHHHHHHH---CHHHHHHcCCCCCCe--EEEECCCcChHHHHHHHHHHHcC--CCEEEecHHHHHHHHhhHHHHHHHHH
Confidence 445555553 235799999999999 99999999999999999999886 688887652 2345
Q ss_pred ecCCc-CC-CccHHHHh-hcCCCCC------HHHHHHHHHHhCCchhhhhCCCCCccccccCCCCCCHHHHHHHHHHHhh
Q 037346 427 AQSPW-IQ-SGKIEENI-LFGKEMD------RERYERVLEACSLKKDLEVLPFGDQTIIGERGINLSGGQKQRIQIARPL 497 (1156)
Q Consensus 427 ~Q~~~-~~-~~ti~eni-~~~~~~~------~~~~~~~~~~~~l~~~~~~~~~g~~t~v~~~g~~LSgGqkqRi~lAral 497 (1156)
+|.+. .. .-++.||| .++.... .+...+.+.. -...|||||+||+.+++|+
T Consensus 125 ~~~~~~~~~~i~~iDeid~l~~~~~~~~~~~~~~~~~~~~~--------------------ll~~lsgg~~~~~~i~~a~ 184 (278)
T 1iy2_A 125 FETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQ--------------------LLVEMDGFEKDTAIVVMAA 184 (278)
T ss_dssp HHHHHTSCSEEEEEETHHHHHCC--------CHHHHHHHHH--------------------HHHHHTTCCTTCCEEEEEE
T ss_pred HHHHHhcCCcEEehhhhHhhhcccccccCCcchHHHHHHHH--------------------HHHHHhCCCCCCCEEEEEe
Confidence 55542 22 23555666 2322110 0111111111 0125899999999999999
Q ss_pred ccCCCe
Q 037346 498 YQDADI 503 (1156)
Q Consensus 498 ~~~~~i 503 (1156)
..+|++
T Consensus 185 t~~p~~ 190 (278)
T 1iy2_A 185 TNRPDI 190 (278)
T ss_dssp ESCTTS
T ss_pred cCCchh
Confidence 999976
|
| >2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A* | Back alignment and structure |
|---|
Probab=98.44 E-value=3.4e-08 Score=110.22 Aligned_cols=134 Identities=19% Similarity=0.108 Sum_probs=76.5
Q ss_pred CCceeeCCCCCCHHHHHHHHhhcccCCCc-eEEEcCeeCCCCChHHHhhcCeeeccccccccccchhccCCCCCCCHHHH
Q 037346 961 LPLVLRGRTGSGKSTLIQTLFRIVESTAG-HILIDGKDISLIGLHDLRTRLSIIPQDPTMFEGTTRSNLDPLEEHADEQI 1039 (1156)
Q Consensus 961 ~~~vL~G~SGsGKSTL~~lL~rl~~p~~G-~I~idG~di~~i~~~~LR~~i~~VpQdp~LF~gTIr~Nl~~~~~~~deei 1039 (1156)
..+++.|++||||||++..|++.+.+.+| +|.+-+.|..... . .+++
T Consensus 106 ~vi~lvG~~GsGKTTl~~~LA~~l~~~~G~~V~lv~~D~~r~~---------------------a-----------~eqL 153 (296)
T 2px0_A 106 KYIVLFGSTGAGKTTTLAKLAAISMLEKHKKIAFITTDTYRIA---------------------A-----------VEQL 153 (296)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHHHHTTCCCEEEEECCCSSTT---------------------H-----------HHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHHHHHHhcCCEEEEEecCcccch---------------------H-----------HHHH
Confidence 34578899999999999999999998788 4544443332211 1 1222
Q ss_pred HHHHHHcCCChHHHhhcCCccccccccccCCCEEEEecCCcCCCHHHHHHHHHHHHHhc---CCceEEEe--ecCccccc
Q 037346 1040 WEALDKCQLGDEVRKKKGKLDSQGRVLLKKSKVLVLDEATASVDTATDNQIQQTLRQHF---SDCTVVTI--AHRITSVL 1114 (1156)
Q Consensus 1040 ~~al~~~~l~~~i~~lp~gl~s~ARALLr~~~ILiLDEaTS~LD~~te~~I~~~l~~~~---~~~TvI~I--aHrl~ti~ 1114 (1156)
....+..++.......|..+ ..+-+.+++++++|+| |+++|+..+..+.+..+-.. .+.+++++ +|..+.+.
T Consensus 154 ~~~~~~~gl~~~~~~~~~~l-~~al~~~~~~dlvIiD--T~G~~~~~~~~~~el~~~l~~~~~~~~~lVl~at~~~~~~~ 230 (296)
T 2px0_A 154 KTYAELLQAPLEVCYTKEEF-QQAKELFSEYDHVFVD--TAGRNFKDPQYIDELKETIPFESSIQSFLVLSATAKYEDMK 230 (296)
T ss_dssp HHHHTTTTCCCCBCSSHHHH-HHHHHHGGGSSEEEEE--CCCCCTTSHHHHHHHHHHSCCCTTEEEEEEEETTBCHHHHH
T ss_pred HHHHHhcCCCeEecCCHHHH-HHHHHHhcCCCEEEEe--CCCCChhhHHHHHHHHHHHhhcCCCeEEEEEECCCCHHHHH
Confidence 22222222211000000000 0111223899999999 99999877766655443221 23456666 88876655
Q ss_pred c-cCEEEEEeCcEEee
Q 037346 1115 D-SAMVLLLNHGLIKE 1129 (1156)
Q Consensus 1115 ~-~D~I~Vl~~G~IvE 1129 (1156)
+ +|++..++.|.|+-
T Consensus 231 ~~~~~~~~l~~~giVl 246 (296)
T 2px0_A 231 HIVKRFSSVPVNQYIF 246 (296)
T ss_dssp HHTTTTSSSCCCEEEE
T ss_pred HHHHHHhcCCCCEEEE
Confidence 4 56555566666664
|
| >3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B* | Back alignment and structure |
|---|
Probab=98.42 E-value=2.4e-07 Score=107.25 Aligned_cols=61 Identities=16% Similarity=0.249 Sum_probs=56.4
Q ss_pred ccccccC-CCEEEEecCCcCCCHHHHHHHHHHHHHhcCCceEEEeecCcccccccCEEEEEe
Q 037346 1063 GRVLLKK-SKVLVLDEATASVDTATDNQIQQTLRQHFSDCTVVTIAHRITSVLDSAMVLLLN 1123 (1156)
Q Consensus 1063 ARALLr~-~~ILiLDEaTS~LD~~te~~I~~~l~~~~~~~TvI~IaHrl~ti~~~D~I~Vl~ 1123 (1156)
|||+..+ |++|||||||++||+++...+.+.|.+..+++|||+|||+.+....||++++|+
T Consensus 298 a~~l~~~~~~~lllDEp~~~LD~~~~~~l~~~l~~~~~~~~vi~~th~~~~~~~~d~~~~l~ 359 (371)
T 3auy_A 298 ANALIGNRVECIILDEPTVYLDENRRAKLAEIFRKVKSIPQMIIITHHRELEDVADVIINVK 359 (371)
T ss_dssp HHHHHSSCCSEEEEESTTTTCCHHHHHHHHHHHHHCCSCSEEEEEESCGGGGGGCSEEEEEE
T ss_pred HHHHhcCCCCeEEEeCCCCcCCHHHHHHHHHHHHHhccCCeEEEEEChHHHHhhCCEEEEEE
Confidence 7899999 999999999999999999999999998756679999999998777799999997
|
| >2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=98.42 E-value=5e-07 Score=97.88 Aligned_cols=164 Identities=16% Similarity=0.124 Sum_probs=84.5
Q ss_pred CCccccc-eEEeeCCeEEEEEcCCCCChHHHHHHHhCCCCCCCcEEEEcCeEEEEecCCcCCCccHHHHhh-cCCCCCHH
Q 037346 373 NPTLRNI-NLKVFHGMRVAVCGTVGSGKSSCLSCILGGVPKESGIIRLCGTKAYVAQSPWIQSGKIEENIL-FGKEMDRE 450 (1156)
Q Consensus 373 ~~~l~~i-~l~i~~g~~~~ivG~~GsGKSTll~~i~g~~~~~~G~i~~~g~~~~v~Q~~~~~~~ti~eni~-~~~~~~~~ 450 (1156)
.+.|+++ .--+++|++++|+||+|||||||+..++....+.. +.+.|+.-+.. ...+.+... +|... +
T Consensus 9 ~~~LD~~l~gGl~~G~~~~i~G~~GsGKTtl~~~~~~~~~~~~------~~v~~~~~e~~--~~~~~~~~~~~g~~~--~ 78 (247)
T 2dr3_A 9 IPGVDEILHGGIPERNVVLLSGGPGTGKTIFSQQFLWNGLKMG------EPGIYVALEEH--PVQVRQNMAQFGWDV--K 78 (247)
T ss_dssp CTTHHHHTTTSEETTCEEEEEECTTSSHHHHHHHHHHHHHHTT------CCEEEEESSSC--HHHHHHHHHTTTCCC--H
T ss_pred chhHHHHcCCCCCCCcEEEEECCCCCCHHHHHHHHHHHHHhcC------CeEEEEEccCC--HHHHHHHHHHcCCCH--H
Confidence 3457766 66799999999999999999999665544332222 23445443321 122333322 22221 1
Q ss_pred HHHHHHHHhCCc--h----hhhhCCCCCccccccCCCCCCHHHHHHHHHHHhhc--cCCCeeeeeCCCCCc--CHHHHHH
Q 037346 451 RYERVLEACSLK--K----DLEVLPFGDQTIIGERGINLSGGQKQRIQIARPLY--QDADIFLLDDPFSPV--DDHTGAH 520 (1156)
Q Consensus 451 ~~~~~~~~~~l~--~----~~~~~~~g~~t~v~~~g~~LSgGqkqRi~lAral~--~~~~illlDep~s~l--D~~~~~~ 520 (1156)
.+ ...-.+. + .+...+.. ...+.+. +....+....++.++ .+|+++++|+|++.+ |+....+
T Consensus 79 ~~---~~~~~l~~~~~~~~~~~~~~~~-~~~~~~~----~~~~~~~~~~i~~~~~~~~~~~vviD~~~~l~~~~~~~~~~ 150 (247)
T 2dr3_A 79 PY---EEKGMFAMVDAFTAGIGKSKEY-EKYIVHD----LTDIREFIEVLRQAIRDINAKRVVVDSVTTLYINKPAMARS 150 (247)
T ss_dssp HH---HHHTSEEEEECSTTTTCC--CC-CSCBCSC----CSSHHHHHHHHHHHHHHHTCCEEEEETSGGGTTTCGGGHHH
T ss_pred HH---hhCCcEEEEecchhhccccccc-ccccccC----ccCHHHHHHHHHHHHHHhCCCEEEECCchHhhcCCHHHHHH
Confidence 11 1111110 0 00000000 0000011 112233333334333 579999999999887 5533333
Q ss_pred HHHHHH---hcCCCEEEEEccCCCc--------c-ccCCEEEEEeC
Q 037346 521 LFKFCW---VSSSKTVIYATHQVEF--------L-PAADLILVIKD 554 (1156)
Q Consensus 521 i~~~~~---~~~~~tvi~vtH~~~~--------~-~~~d~i~~l~~ 554 (1156)
.+..+. ...|.|+|+++|.... + ..||.|+.|+.
T Consensus 151 ~l~~l~~~~~~~~~~vi~~~h~~~~~~~~~~~~~~~~~D~vi~L~~ 196 (247)
T 2dr3_A 151 IILQLKRVLAGTGCTSIFVSQVSVGERGFGGPGVEHGVDGIIRLDL 196 (247)
T ss_dssp HHHHHHHHHHHTTCEEEEEEECC----CCC-CCHHHHSSEEEEEEE
T ss_pred HHHHHHHHHHHCCCeEEEEecCCCCcccccccccceeEEEEEEEEE
Confidence 333332 2468899999997654 2 34899999964
|
| >1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2 | Back alignment and structure |
|---|
Probab=98.42 E-value=1.1e-09 Score=126.17 Aligned_cols=159 Identities=11% Similarity=0.118 Sum_probs=102.4
Q ss_pred CCCCceeeCCCCCCHHHHHHHHhh------------cccCCCceEEEcCeeCCCCChHHH---hhcC---eeeccccccc
Q 037346 959 PNLPLVLRGRTGSGKSTLIQTLFR------------IVESTAGHILIDGKDISLIGLHDL---RTRL---SIIPQDPTMF 1020 (1156)
Q Consensus 959 ~~~~~vL~G~SGsGKSTL~~lL~r------------l~~p~~G~I~idG~di~~i~~~~L---R~~i---~~VpQdp~LF 1020 (1156)
++..++|.|++|+|||||+++|.| ..+|+.|.|.++|..+..+ ..+ ++.+ ..+.+.|-+.
T Consensus 19 ~g~~vgiVG~pnaGKSTL~n~Ltg~~~a~~~~~p~tTi~p~~G~v~v~~~r~~~l--~~~~~~~~~v~~~i~lvD~pGl~ 96 (392)
T 1ni3_A 19 NNLKTGIVGMPNVGKSTFFRAITKSVLGNPANYPYATIDPEEAKVAVPDERFDWL--CEAYKPKSRVPAFLTVFDIAGLT 96 (392)
T ss_dssp SCCEEEEEECSSSSHHHHHHHHHHSTTTSTTCCSSCCCCTTEEEEEECCHHHHHH--HHHHCCSEEECEEEEEECTGGGC
T ss_pred CCCEEEEECCCCCCHHHHHHHHHCCCcccccCCCceeecceeeeeeeCCcchhhh--hhhcccccccCcceEEEeccccc
Confidence 455578999999999999999999 6789999999988532211 011 1112 2455666555
Q ss_pred cc-cchhccCCCCCCCHHHHHHHHHHcCCChHHHhhcCCcccccccccc-----CC--CEEEEecCCcCCCHHHHHHHHH
Q 037346 1021 EG-TTRSNLDPLEEHADEQIWEALDKCQLGDEVRKKKGKLDSQGRVLLK-----KS--KVLVLDEATASVDTATDNQIQQ 1092 (1156)
Q Consensus 1021 ~g-TIr~Nl~~~~~~~deei~~al~~~~l~~~i~~lp~gl~s~ARALLr-----~~--~ILiLDEaTS~LD~~te~~I~~ 1092 (1156)
.+ |..+++. .+....++.+..--++-.. +..+.+.. +| +|+++||+++..|.++-+...+
T Consensus 97 ~~~s~~e~L~-------~~fl~~ir~~d~il~Vvd~-----~~d~~i~~v~~~~dP~~di~ildeel~~~D~~~~~k~~~ 164 (392)
T 1ni3_A 97 KGASTGVGLG-------NAFLSHVRAVDAIYQVVRA-----FDDAEIIHVEGDVDPIRDLSIIVDELLIKDAEFVEKHLE 164 (392)
T ss_dssp CCCCSSSSSC-------HHHHHHHTTCSEEEEEEEC-----CCTTCSSCCSSSSCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCcHHHHHH-------HHHHHHHHHHHHHHHHHhc-----cccceeeeeccccCcchhhhhchhhhHHHHHHHHHHHHH
Confidence 43 3333331 1233333333211011000 01233332 88 9999999999999999888888
Q ss_pred HHHHh-cC-CceEEEeecCcccccc-cCEEE-EEeCc-EEeeecCh
Q 037346 1093 TLRQH-FS-DCTVVTIAHRITSVLD-SAMVL-LLNHG-LIKEYDSP 1133 (1156)
Q Consensus 1093 ~l~~~-~~-~~TvI~IaHrl~ti~~-~D~I~-Vl~~G-~IvE~G~~ 1133 (1156)
.++.. .+ +.|+ ++|.+..+.. ||+|. +|++| +++..|+.
T Consensus 165 ~l~~~~~~~g~ti--~sh~~~~~~~l~~~i~~~L~~G~~~~~~~~~ 208 (392)
T 1ni3_A 165 GLRKITSRGANTL--EMKAKKEEQAIIEKVYQYLTETKQPIRKGDW 208 (392)
T ss_dssp HHHHTTCCSSCSS--SHHHHHHHHHHHHHHHHHHHTTCSCGGGSCC
T ss_pred HHHHHHHhcCCcc--ccccHHHHHHHHHHHHHHhccCCceeecCCC
Confidence 88776 44 4554 4999877654 89999 99999 88876664
|
| >1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A* | Back alignment and structure |
|---|
Probab=98.41 E-value=6.3e-10 Score=127.07 Aligned_cols=80 Identities=15% Similarity=0.168 Sum_probs=60.1
Q ss_pred EEeeeEEEeCCCCCCCccccceEEeeCC-------eEEEEEcCCCCChHHHHHHHhCCC----CCCCcEEEEc-------
Q 037346 359 EIIDGSFSWDFSSPNPTLRNINLKVFHG-------MRVAVCGTVGSGKSSCLSCILGGV----PKESGIIRLC------- 420 (1156)
Q Consensus 359 ~~~~~~f~~~~~~~~~~l~~i~l~i~~g-------~~~~ivG~~GsGKSTll~~i~g~~----~~~~G~i~~~------- 420 (1156)
+.++++..|. ...+++++++.+++| +.++|+||||+|||||+++|+|++ .+.+|.+..+
T Consensus 20 r~~~l~~~~g---~~~~~~~l~~~i~~~~~~~~~~~~~ll~Gp~G~GKTTLa~~ia~~l~~~~~~~sg~~~~~~~~l~~~ 96 (334)
T 1in4_A 20 RPKSLDEFIG---QENVKKKLSLALEAAKMRGEVLDHVLLAGPPGLGKTTLAHIIASELQTNIHVTSGPVLVKQGDMAAI 96 (334)
T ss_dssp SCSSGGGCCS---CHHHHHHHHHHHHHHHHHTCCCCCEEEESSTTSSHHHHHHHHHHHHTCCEEEEETTTCCSHHHHHHH
T ss_pred CCccHHHccC---cHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCcHHHHHHHHHHHhCCCEEEEechHhcCHHHHHHH
Confidence 3345554553 346899999999877 899999999999999999999998 5666765432
Q ss_pred ------CeEEEEecCCcCCCccHHHHhh
Q 037346 421 ------GTKAYVAQSPWIQSGKIEENIL 442 (1156)
Q Consensus 421 ------g~~~~v~Q~~~~~~~ti~eni~ 442 (1156)
+.+.+++|.+.+.. ++.|++.
T Consensus 97 ~~~~~~~~v~~iDE~~~l~~-~~~e~L~ 123 (334)
T 1in4_A 97 LTSLERGDVLFIDEIHRLNK-AVEELLY 123 (334)
T ss_dssp HHHCCTTCEEEEETGGGCCH-HHHHHHH
T ss_pred HHHccCCCEEEEcchhhcCH-HHHHHHH
Confidence 35788988776654 7777764
|
| >1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B* | Back alignment and structure |
|---|
Probab=98.41 E-value=2.8e-08 Score=103.64 Aligned_cols=129 Identities=20% Similarity=0.221 Sum_probs=74.4
Q ss_pred ceeeCCCCCCHHHHHHHHhhcccC-----------CCceEEEcCeeCCC--CChHHHhhcCeeeccccccccc--cchhc
Q 037346 963 LVLRGRTGSGKSTLIQTLFRIVES-----------TAGHILIDGKDISL--IGLHDLRTRLSIIPQDPTMFEG--TTRSN 1027 (1156)
Q Consensus 963 ~vL~G~SGsGKSTL~~lL~rl~~p-----------~~G~I~idG~di~~--i~~~~LR~~i~~VpQdp~LF~g--TIr~N 1027 (1156)
++|.|++|||||||++.+.+...+ .+|+|.++|.++.- ++....++..++++|...-.++ ++.|+
T Consensus 32 v~lvG~~g~GKSTLl~~l~~~~~~~~~~~t~~~~~~~~~i~~~g~~~~~~i~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~ 111 (191)
T 1oix_A 32 VVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGLERYRAITSAYYRGAVGALLVYDI 111 (191)
T ss_dssp EEEEECTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEEEEEEETTEEEEEEEEEECSCCSSSCCCHHHHTTCCEEEEEEET
T ss_pred EEEECcCCCCHHHHHHHHhcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEECCCCcchhhhhHHHhhcCCEEEEEEEC
Confidence 578899999999999999998765 58999999976531 2222223334455543211111 23332
Q ss_pred cCCCCCCCHHHH---HHHHHH-cCCChHH----H--hhcC---CccccccccccCCCEEEEecCCcCCCHHHHHHHHHHH
Q 037346 1028 LDPLEEHADEQI---WEALDK-CQLGDEV----R--KKKG---KLDSQGRVLLKKSKVLVLDEATASVDTATDNQIQQTL 1094 (1156)
Q Consensus 1028 l~~~~~~~deei---~~al~~-~~l~~~i----~--~lp~---gl~s~ARALLr~~~ILiLDEaTS~LD~~te~~I~~~l 1094 (1156)
.+.. +-+++ .+.++. .....-+ . .+++ .....||++.++|+++++| ||++|.++...+.+.|
T Consensus 112 ~~~~---s~~~~~~~~~~~~~~~~~~~~i~~v~nK~Dl~~~~~~~~~~a~~l~~~~~~~~ld--~Sald~~~v~~l~~~l 186 (191)
T 1oix_A 112 AKHL---TYENVERWLKELRDHADSNIVIMLVGNKSDLRHLRAVPTDEARAFAEKNGLSFIE--TSALDSTNVEAAFQTI 186 (191)
T ss_dssp TCHH---HHHTHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEE--CCTTTCTTHHHHHHHH
T ss_pred cCHH---HHHHHHHHHHHHHHhcCCCCcEEEEEECcccccccccCHHHHHHHHHHcCCEEEE--EeCCCCCCHHHHHHHH
Confidence 2210 11111 111221 1110000 0 0111 1112389999999999999 9999999998888887
Q ss_pred HH
Q 037346 1095 RQ 1096 (1156)
Q Consensus 1095 ~~ 1096 (1156)
.+
T Consensus 187 ~~ 188 (191)
T 1oix_A 187 LT 188 (191)
T ss_dssp HH
T ss_pred HH
Confidence 65
|
| >3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=98.41 E-value=3.3e-08 Score=104.20 Aligned_cols=59 Identities=14% Similarity=0.124 Sum_probs=42.0
Q ss_pred eEEeeCCeEEEEEcCCCCChHHHHHHHhCCCCCCCcEEEEcC-------------eEEEEecCCcCCCc-cHHHHhh
Q 037346 380 NLKVFHGMRVAVCGTVGSGKSSCLSCILGGVPKESGIIRLCG-------------TKAYVAQSPWIQSG-KIEENIL 442 (1156)
Q Consensus 380 ~l~i~~g~~~~ivG~~GsGKSTll~~i~g~~~~~~G~i~~~g-------------~~~~v~Q~~~~~~~-ti~eni~ 442 (1156)
|+++++|++++|+||||||||||+++|+|+++ .+.+++ .++|++|++..+.. ++.+|+.
T Consensus 1 s~~m~~g~ii~l~Gp~GsGKSTl~~~L~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 73 (205)
T 3tr0_A 1 SNAMNKANLFIISAPSGAGKTSLVRALVKALA----EIKISISHTTRPKRPGDQEGVDYFFIDETRFQAMVKEGAFL 73 (205)
T ss_dssp ----CCCCEEEEECCTTSCHHHHHHHHHHHSS----SEEECCCEECSCCCTTCCBTTTBEECCHHHHHHHHHHTCEE
T ss_pred CCcCCCCcEEEEECcCCCCHHHHHHHHHhhCC----CeEEeceeccCCCchhHhcCceEEeccHHHHHHHHhcCcEE
Confidence 56788999999999999999999999999974 344443 24688888765543 5555544
|
| >1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A* | Back alignment and structure |
|---|
Probab=98.40 E-value=4.7e-08 Score=113.95 Aligned_cols=111 Identities=22% Similarity=0.239 Sum_probs=76.5
Q ss_pred CceeeCCCCCCHHHHHHHHhhcccCCCceEEEcCeeCCC----CChHHHhhcCeeec---------cccccc--c-----
Q 037346 962 PLVLRGRTGSGKSTLIQTLFRIVESTAGHILIDGKDISL----IGLHDLRTRLSIIP---------QDPTMF--E----- 1021 (1156)
Q Consensus 962 ~~vL~G~SGsGKSTL~~lL~rl~~p~~G~I~idG~di~~----i~~~~LR~~i~~Vp---------Qdp~LF--~----- 1021 (1156)
-+++.|||||||||++++|+|++.|.+|+|.++|.++.. ++...+++.+++.+ |+|.++ .
T Consensus 169 ii~I~GpnGSGKTTlL~allg~l~~~~g~I~~~ed~ie~~~~~~~q~~v~~~~g~~f~~~lr~~Lrq~pd~i~vgEiRd~ 248 (418)
T 1p9r_A 169 IILVTGPTGSGKSTTLYAGLQELNSSERNILTVEDPIEFDIDGIGQTQVNPRVDMTFARGLRAILRQDPDVVMVGEIRDL 248 (418)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHHCCTTSCEEEEESSCCSCCSSSEEEECBGGGTBCHHHHHHHHGGGCCSEEEESCCCSH
T ss_pred eEEEECCCCCCHHHHHHHHHhhcCCCCCEEEEecccchhccCCcceEEEccccCcCHHHHHHHHhccCCCeEEEcCcCCH
Confidence 357889999999999999999999999999999988742 11223455666644 999753 2
Q ss_pred ccchhccCCC----------CCCCHHHHHHHHHHcCCChHHHhhcCCccc-----cccccccCCCEEE
Q 037346 1022 GTTRSNLDPL----------EEHADEQIWEALDKCQLGDEVRKKKGKLDS-----QGRVLLKKSKVLV 1074 (1156)
Q Consensus 1022 gTIr~Nl~~~----------~~~~deei~~al~~~~l~~~i~~lp~gl~s-----~ARALLr~~~ILi 1074 (1156)
-|+++|+... ...+..+..+.|...++.++. ++..|.. .||+|+.+|++..
T Consensus 249 et~~~~l~a~~tGhlv~~tlh~~~~~~~i~rL~~lgl~~~~--~~~~LSgg~~QRLaraL~~~p~~~~ 314 (418)
T 1p9r_A 249 ETAQIAVQASLTGHLVMSTLHTNTAVGAVTRLRDMGIEPFL--ISSSLLGVLAQRLVRTLCPDCKEPY 314 (418)
T ss_dssp HHHHHHHHHHHTTCEEEEEECCSSSHHHHHHHHHHTCCHHH--HHHHEEEEEEEEEEEEECTTTCEEE
T ss_pred HHHHHHHHHHHhCCCcccccchhhHHHHHHHHHHcCCcHHH--HHHHHHHHHHHHhhhhhcCCCCccC
Confidence 2777776431 111224455678888887653 3333322 2899999999875
|
| >1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A* | Back alignment and structure |
|---|
Probab=98.39 E-value=2.1e-09 Score=117.79 Aligned_cols=124 Identities=16% Similarity=0.218 Sum_probs=78.8
Q ss_pred EEEeeeEEEeCCCCCCCccccceEEeeCCeEEEEEcCCCCChHHHHHHHhCCCCCCCcEEEEcCe-------------EE
Q 037346 358 IEIIDGSFSWDFSSPNPTLRNINLKVFHGMRVAVCGTVGSGKSSCLSCILGGVPKESGIIRLCGT-------------KA 424 (1156)
Q Consensus 358 i~~~~~~f~~~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKSTll~~i~g~~~~~~G~i~~~g~-------------~~ 424 (1156)
.+++++.+.|. ...+++++++++++| ++|+||+|||||||+++|+++.. .|.+.++|. ++
T Consensus 26 ~~l~~l~~~~~---~~~~~~~~~~~~~~g--~ll~G~~G~GKTtl~~~i~~~~~--~~~i~~~~~~~~~~~~~~~~~~i~ 98 (254)
T 1ixz_A 26 EELKEIVEFLK---NPSRFHEMGARIPKG--VLLVGPPGVGKTHLARAVAGEAR--VPFITASGSDFVEMFVGVGAARVR 98 (254)
T ss_dssp HHHHHHHHHHH---CHHHHHHTTCCCCSE--EEEECCTTSSHHHHHHHHHHHTT--CCEEEEEHHHHHHSCTTHHHHHHH
T ss_pred HHHHHHHHHHH---CHHHHHHcCCCCCCe--EEEECCCCCCHHHHHHHHHHHhC--CCEEEeeHHHHHHHHhhHHHHHHH
Confidence 34556666564 235899999999999 99999999999999999999875 678877652 23
Q ss_pred EEecCCc-CC-CccHHHHh-hcCCCCC------HHHHHHHHHHhCCchhhhhCCCCCccccccCCCCCCHHHHHHHHHHH
Q 037346 425 YVAQSPW-IQ-SGKIEENI-LFGKEMD------RERYERVLEACSLKKDLEVLPFGDQTIIGERGINLSGGQKQRIQIAR 495 (1156)
Q Consensus 425 ~v~Q~~~-~~-~~ti~eni-~~~~~~~------~~~~~~~~~~~~l~~~~~~~~~g~~t~v~~~g~~LSgGqkqRi~lAr 495 (1156)
+++|... .. ..++.||| .++.... .+...+.+. +-...|||||+||+.+++
T Consensus 99 ~~~~~~~~~~~~i~~~Deid~l~~~~~~~~~~~~~~~~~~~~--------------------~ll~~l~g~~~~~~~i~~ 158 (254)
T 1ixz_A 99 DLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLN--------------------QLLVEMDGFEKDTAIVVM 158 (254)
T ss_dssp HHHHHHTTSSSEEEEEETHHHHHC---------CHHHHHHHH--------------------HHHHHHHTCCTTCCEEEE
T ss_pred HHHHHHHhcCCeEEEehhhhhhhcccCccccccchHHHHHHH--------------------HHHHHHhCCCCCCCEEEE
Confidence 4444432 11 22445555 2221100 001111111 011258899999999999
Q ss_pred hhccCCCeeeeeCCC
Q 037346 496 PLYQDADIFLLDDPF 510 (1156)
Q Consensus 496 al~~~~~illlDep~ 510 (1156)
|+..+|++ +|+++
T Consensus 159 a~t~~p~~--ld~~l 171 (254)
T 1ixz_A 159 AATNRPDI--LDPAL 171 (254)
T ss_dssp EEESCGGG--SCGGG
T ss_pred EccCCchh--CCHHH
Confidence 99999876 45443
|
| >3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A* | Back alignment and structure |
|---|
Probab=98.38 E-value=8.6e-08 Score=112.92 Aligned_cols=69 Identities=13% Similarity=0.123 Sum_probs=56.6
Q ss_pred EEEEEEEEEcCCCCceeeCCCCCCHHHHHHHHhhcccCCCceEEEcCeeCCCCChHH--------HhhcCeeeccccc
Q 037346 949 NIRHLQVRYAPNLPLVLRGRTGSGKSTLIQTLFRIVESTAGHILIDGKDISLIGLHD--------LRTRLSIIPQDPT 1018 (1156)
Q Consensus 949 ~~~~Vsf~Y~~~~~~vL~G~SGsGKSTL~~lL~rl~~p~~G~I~idG~di~~i~~~~--------LR~~i~~VpQdp~ 1018 (1156)
.++||+|..++ +.++|.||||||||||+++|.|+++|++|+|.++|.++...+... ++..+.++.+++.
T Consensus 19 ~l~~vsl~i~~-e~~~liG~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~ 95 (483)
T 3euj_A 19 GFFARTFDFDE-LVTTLSGGNGAGKSTTMAGFVTALIPDLTLLNFRNTTEAGSTSSSRDKGLYGKLKAGVCYAVLETV 95 (483)
T ss_dssp TEEEEEEECCS-SEEEEECCTTSSHHHHHHHHHHHHCCCTTTCCCCCTTSCSCCCCSSCCSCGGGSCSSEEEEEEEEE
T ss_pred cccceEEEEcc-ceEEEECCCCCcHHHHHHHHhcCCCCCCCEEEECCEEcccCchhHHhHHHHHhcCCCceEEEEehh
Confidence 37899999988 878999999999999999999999999999999999998665432 2233466666653
|
| >2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1 | Back alignment and structure |
|---|
Probab=98.36 E-value=2.7e-08 Score=119.10 Aligned_cols=151 Identities=13% Similarity=0.194 Sum_probs=90.5
Q ss_pred CCCceeeCCCCCCHHHHHHHHhhcccCCCceEEEcCeeCCCCChHHHhhcCeeeccccccccc--cchhcc------CC-
Q 037346 960 NLPLVLRGRTGSGKSTLIQTLFRIVESTAGHILIDGKDISLIGLHDLRTRLSIIPQDPTMFEG--TTRSNL------DP- 1030 (1156)
Q Consensus 960 ~~~~vL~G~SGsGKSTL~~lL~rl~~p~~G~I~idG~di~~i~~~~LR~~i~~VpQdp~LF~g--TIr~Nl------~~- 1030 (1156)
+..+++.|+|||||||++++|+|+++|++|.|.|+|.+--.++. ++.+++++|++. ..+ |.++++ +|
T Consensus 260 g~~i~I~GptGSGKTTlL~aL~~~i~~~~giitied~~E~~~~~---~~~v~~~~r~~~-~~~~~~~~~~l~~~LR~~PD 335 (511)
T 2oap_1 260 KFSAIVVGETASGKTTTLNAIMMFIPPDAKVVSIEDTREIKLYH---ENWIAEVTRTGM-GEGEIDMYDLLRAALRQRPD 335 (511)
T ss_dssp TCCEEEEESTTSSHHHHHHHHGGGSCTTCCEEEEESSCCCCCCC---SSEEEEECBCCS-SSCCBCHHHHHHTTGGGCCS
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhCCCCCCEEEEcCcccccCCC---CCeEEEEeeccc-ccCCcCHHHHHHHhhccCCC
Confidence 44467889999999999999999999999999999876322221 345667777654 222 343333 12
Q ss_pred ---CCCCCHHHHHHHHHHcCCC-------------hHHHhh---cCCcccc---------ccc-ccc----CCCEEEEec
Q 037346 1031 ---LEEHADEQIWEALDKCQLG-------------DEVRKK---KGKLDSQ---------GRV-LLK----KSKVLVLDE 1077 (1156)
Q Consensus 1031 ---~~~~~deei~~al~~~~l~-------------~~i~~l---p~gl~s~---------ARA-LLr----~~~ILiLDE 1077 (1156)
.++..++|...+++.++-. +.+..+ |.++... ... .++ ...++-+=|
T Consensus 336 ~iivgEir~~E~~~~l~a~~tGh~~~sT~Ha~~~~~~l~Rl~~~~~~v~~~l~~~l~~vi~~~~~~s~G~~~R~~~ai~E 415 (511)
T 2oap_1 336 YIIVGEVRGREAQTLFQAMSTGHASYSTLHAGDINQMVYRLESEPLKVPRSMLQFLDIALVQTMWVRGNTRLRRTKEVNE 415 (511)
T ss_dssp EEEESCCCSTHHHHHHHHHHTTCEEEEEEECSSHHHHHHHHHSTTTCCCGGGGGGCCEEEEEEEEESSSCEEEEEEEEEE
T ss_pred eEEeCCcCHHHHHHHHHhhcCCCCcccccccCCHHHHHHHHHhcccccHHHHHhhccEEEEEEEEEeCCCceEEEEEEEE
Confidence 1345555666666655311 112211 1121110 000 111 112333347
Q ss_pred CCcCCCHHHHHHHHHHHHHhc-CCceEEE--eecCcccccc
Q 037346 1078 ATASVDTATDNQIQQTLRQHF-SDCTVVT--IAHRITSVLD 1115 (1156)
Q Consensus 1078 aTS~LD~~te~~I~~~l~~~~-~~~TvI~--IaHrl~ti~~ 1115 (1156)
|+++|+++...+.+.|.++. .++|++. ++|+++.+..
T Consensus 416 -~~GlDp~~~~~~~~~l~~~~~~~~tii~~~~sH~l~ei~~ 455 (511)
T 2oap_1 416 -ILGIDPVDKNLLVNQFVKWDPKEDKHIEVSMPKKLEKMAD 455 (511)
T ss_dssp -EEECCSSSSCCEEEEEEEEETTTTEEEECSCCTHHHHHHH
T ss_pred -EcCcccCCCeEEEEEeEEEcccCCEEEEcccHHHHHHHHH
Confidence 99999988777666665553 3688875 8999988753
|
| >2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V | Back alignment and structure |
|---|
Probab=98.36 E-value=1.6e-07 Score=106.65 Aligned_cols=95 Identities=18% Similarity=0.115 Sum_probs=64.6
Q ss_pred CCCceeeCCCCCCHHHHHHHHhhccc-CCCceEEEc-CeeCCCCChHHHhhcCeeeccccccccc-cchhccCCCCCCCH
Q 037346 960 NLPLVLRGRTGSGKSTLIQTLFRIVE-STAGHILID-GKDISLIGLHDLRTRLSIIPQDPTMFEG-TTRSNLDPLEEHAD 1036 (1156)
Q Consensus 960 ~~~~vL~G~SGsGKSTL~~lL~rl~~-p~~G~I~id-G~di~~i~~~~LR~~i~~VpQdp~LF~g-TIr~Nl~~~~~~~d 1036 (1156)
+..++|.|+||||||||+++|.|+.. |.+|+|.++ |.+.. ...++.++++||++.+++. |++++-.. ..+.
T Consensus 215 G~~~~lvG~sG~GKSTLln~L~g~~~~~~~G~I~~~~G~g~~----tt~~~~i~~v~q~~~l~dtpgv~e~~l~--~l~~ 288 (358)
T 2rcn_A 215 GRISIFAGQSGVGKSSLLNALLGLQNEILTNDVSNVSGLGQH----TTTAARLYHFPHGGDVIDSPGVREFGLW--HLEP 288 (358)
T ss_dssp TSEEEEECCTTSSHHHHHHHHHCCSSCCCCC-----------------CCCEEEECTTSCEEEECHHHHTCCCC--CCCH
T ss_pred CCEEEEECCCCccHHHHHHHHhccccccccCCccccCCCCcc----ceEEEEEEEECCCCEecCcccHHHhhhc--CCCH
Confidence 44568999999999999999999999 999999997 76643 2346789999999998865 89987322 2344
Q ss_pred HH----HHHHHHHcCCChHHHhhcCCcc
Q 037346 1037 EQ----IWEALDKCQLGDEVRKKKGKLD 1060 (1156)
Q Consensus 1037 ee----i~~al~~~~l~~~i~~lp~gl~ 1060 (1156)
++ +.++++.+++.++....+..+.
T Consensus 289 ~e~~~~~~e~l~~~gl~~f~~~~~~~lS 316 (358)
T 2rcn_A 289 EQITQGFVEFHDYLGHCKYRDCKHDADP 316 (358)
T ss_dssp HHHHHTSGGGGGGTTCSSSTTCCSSSCT
T ss_pred HHHHHHHHHHHHHcCCchhcCCCcccCC
Confidence 44 4467778888877766666664
|
| >2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=98.36 E-value=5.8e-07 Score=97.39 Aligned_cols=146 Identities=14% Similarity=0.138 Sum_probs=78.9
Q ss_pred cCCCCceeeCCCCCCHHHHHHH-HhhcccCCCceEEEcCeeCCCCChHHHhhcCeeeccccccc-cccchhc----cCC-
Q 037346 958 APNLPLVLRGRTGSGKSTLIQT-LFRIVESTAGHILIDGKDISLIGLHDLRTRLSIIPQDPTMF-EGTTRSN----LDP- 1030 (1156)
Q Consensus 958 ~~~~~~vL~G~SGsGKSTL~~l-L~rl~~p~~G~I~idG~di~~i~~~~LR~~i~~VpQdp~LF-~gTIr~N----l~~- 1030 (1156)
++++-.+|.|++|||||||+.. +....+...+.+++++.. ..-.+....+++++.+|+.... +-++.+. +..
T Consensus 21 ~~G~~~~i~G~~GsGKTtl~~~~~~~~~~~~~~v~~~~~e~-~~~~~~~~~~~~g~~~~~~~~~~~l~~~~~~~~~~~~~ 99 (247)
T 2dr3_A 21 PERNVVLLSGGPGTGKTIFSQQFLWNGLKMGEPGIYVALEE-HPVQVRQNMAQFGWDVKPYEEKGMFAMVDAFTAGIGKS 99 (247)
T ss_dssp ETTCEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEESSS-CHHHHHHHHHTTTCCCHHHHHHTSEEEEECSTTTTCC-
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEccC-CHHHHHHHHHHcCCCHHHHhhCCcEEEEecchhhcccc
Confidence 4566567889999999999654 455555545556666533 2111222234577877764211 0011110 000
Q ss_pred --------CCCCCHHHHHHHHHHcCCChHHHhhcCCccccccccc--cCCCEEEEecCCcCC--CHHHHHHHHHHHHHh-
Q 037346 1031 --------LEEHADEQIWEALDKCQLGDEVRKKKGKLDSQGRVLL--KKSKVLVLDEATASV--DTATDNQIQQTLRQH- 1097 (1156)
Q Consensus 1031 --------~~~~~deei~~al~~~~l~~~i~~lp~gl~s~ARALL--r~~~ILiLDEaTS~L--D~~te~~I~~~l~~~- 1097 (1156)
..+.+-+++.+.+ +.++ .+|+++++|++|+-+ |+.........+.+.
T Consensus 100 ~~~~~~~~~~~~~~~~~~~~i--------------------~~~~~~~~~~~vviD~~~~l~~~~~~~~~~~l~~l~~~~ 159 (247)
T 2dr3_A 100 KEYEKYIVHDLTDIREFIEVL--------------------RQAIRDINAKRVVVDSVTTLYINKPAMARSIILQLKRVL 159 (247)
T ss_dssp -CCCSCBCSCCSSHHHHHHHH--------------------HHHHHHHTCCEEEEETSGGGTTTCGGGHHHHHHHHHHHH
T ss_pred cccccccccCccCHHHHHHHH--------------------HHHHHHhCCCEEEECCchHhhcCCHHHHHHHHHHHHHHH
Confidence 0011112222211 1111 368999999999887 543323332333322
Q ss_pred -cCCceEEEeecCccc---------ccccCEEEEEeC
Q 037346 1098 -FSDCTVVTIAHRITS---------VLDSAMVLLLNH 1124 (1156)
Q Consensus 1098 -~~~~TvI~IaHrl~t---------i~~~D~I~Vl~~ 1124 (1156)
..++|||+++|.... ...||.|+.|+.
T Consensus 160 ~~~~~~vi~~~h~~~~~~~~~~~~~~~~~D~vi~L~~ 196 (247)
T 2dr3_A 160 AGTGCTSIFVSQVSVGERGFGGPGVEHGVDGIIRLDL 196 (247)
T ss_dssp HHTTCEEEEEEECC----CCC-CCHHHHSSEEEEEEE
T ss_pred HHCCCeEEEEecCCCCcccccccccceeEEEEEEEEE
Confidence 248999999998764 245899999974
|
| >3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0 | Back alignment and structure |
|---|
Probab=98.34 E-value=7.5e-08 Score=100.06 Aligned_cols=79 Identities=19% Similarity=0.272 Sum_probs=66.1
Q ss_pred CCCCceeeCCCCCCHHHHHHHHhhccc-------------CCCceEEEcCeeCCCCChHHHhhcCeeeccccccccccch
Q 037346 959 PNLPLVLRGRTGSGKSTLIQTLFRIVE-------------STAGHILIDGKDISLIGLHDLRTRLSIIPQDPTMFEGTTR 1025 (1156)
Q Consensus 959 ~~~~~vL~G~SGsGKSTL~~lL~rl~~-------------p~~G~I~idG~di~~i~~~~LR~~i~~VpQdp~LF~gTIr 1025 (1156)
++..++|.||||||||||++.|++.++ |..|+ +||+|..-++.+.+++.+ .|+.+++.+++.
T Consensus 18 ~g~~ivl~GPSGaGKsTL~~~L~~~~~~~~~~~vs~TTR~p~~gE--~~G~~y~fvs~~~f~~~i---~~~~fle~~~~~ 92 (197)
T 3ney_A 18 GRKTLVLIGASGVGRSHIKNALLSQNPEKFVYPVPYTTRPPRKSE--EDGKEYHFISTEEMTRNI---SANEFLEFGSYQ 92 (197)
T ss_dssp SCCEEEEECCTTSSHHHHHHHHHHHCTTTEECCCCEECSCCCTTC--CTTSSCEECCHHHHHHHH---HTTCEEEEEEET
T ss_pred CCCEEEEECcCCCCHHHHHHHHHhhCCccEEeeecccccCCcCCe--eccccceeccHHHhhhhh---hhhhhhhhhhhh
Confidence 355678999999999999999999986 77887 799999999999999876 799999999999
Q ss_pred hccCCCCCCCHHHHHHHHHH
Q 037346 1026 SNLDPLEEHADEQIWEALDK 1045 (1156)
Q Consensus 1026 ~Nl~~~~~~~deei~~al~~ 1045 (1156)
+|. ++. +.+.+.+++++
T Consensus 93 ~n~-YGt--~~~~v~~~l~~ 109 (197)
T 3ney_A 93 GNM-FGT--KFETVHQIHKQ 109 (197)
T ss_dssp TEE-EEE--EHHHHHHHHHT
T ss_pred cee-ccc--chhhHHHHHhc
Confidence 995 542 35667776664
|
| >3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum} | Back alignment and structure |
|---|
Probab=98.34 E-value=7.3e-08 Score=103.81 Aligned_cols=38 Identities=16% Similarity=0.156 Sum_probs=22.9
Q ss_pred CCccccceEEeeCCeEEEEEcCCCCChHHHHHHHh-CCC
Q 037346 373 NPTLRNINLKVFHGMRVAVCGTVGSGKSSCLSCIL-GGV 410 (1156)
Q Consensus 373 ~~~l~~i~l~i~~g~~~~ivG~~GsGKSTll~~i~-g~~ 410 (1156)
....+++||++++|++++|+||||||||||+++|+ |++
T Consensus 14 ~~~~~~~sl~v~~G~ii~l~Gp~GsGKSTl~~~L~~~~~ 52 (231)
T 3lnc_A 14 AQTQGPGSMLKSVGVILVLSSPSGCGKTTVANKLLEKQK 52 (231)
T ss_dssp --------CCEECCCEEEEECSCC----CHHHHHHC---
T ss_pred hcccCCCCcccCCCCEEEEECCCCCCHHHHHHHHHhcCC
Confidence 35678999999999999999999999999999999 998
|
| >2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.32 E-value=2.2e-08 Score=110.75 Aligned_cols=126 Identities=15% Similarity=0.150 Sum_probs=83.5
Q ss_pred ceeeCCCCCCHHHHHHHHhhcccCCCceEEEcCeeCCCCChHHHhhcCeeecccc-cccc-ccchhccCCCCCC-CHHHH
Q 037346 963 LVLRGRTGSGKSTLIQTLFRIVESTAGHILIDGKDISLIGLHDLRTRLSIIPQDP-TMFE-GTTRSNLDPLEEH-ADEQI 1039 (1156)
Q Consensus 963 ~vL~G~SGsGKSTL~~lL~rl~~p~~G~I~idG~di~~i~~~~LR~~i~~VpQdp-~LF~-gTIr~Nl~~~~~~-~deei 1039 (1156)
+.|.||+|||||||+++|.+...+ |.|.++|.++.+......++.+++++|++ ..+. -++.||++..... .+.+.
T Consensus 47 vlL~Gp~GtGKTtLakala~~~~~--~~i~i~g~~l~~~~~~~~~~~i~~vf~~a~~~~p~i~~~Deid~~~~~r~~~~~ 124 (274)
T 2x8a_A 47 VLLAGPPGCGKTLLAKAVANESGL--NFISVKGPELLNMYVGESERAVRQVFQRAKNSAPCVIFFDEVDALCPRRSDRET 124 (274)
T ss_dssp EEEESSTTSCHHHHHHHHHHHTTC--EEEEEETTTTCSSTTHHHHHHHHHHHHHHHHTCSEEEEEETCTTTCC-------
T ss_pred EEEECCCCCcHHHHHHHHHHHcCC--CEEEEEcHHHHhhhhhHHHHHHHHHHHHHHhcCCCeEeeehhhhhhcccCCCcc
Confidence 678999999999999999999876 79999999998877778888999999986 3443 3778999864321 11111
Q ss_pred HHHHHHcCCChHHHhhcCCcc---ccccccccCCCEEEEecCCcC------------CCHHHHHHHHHHH
Q 037346 1040 WEALDKCQLGDEVRKKKGKLD---SQGRVLLKKSKVLVLDEATAS------------VDTATDNQIQQTL 1094 (1156)
Q Consensus 1040 ~~al~~~~l~~~i~~lp~gl~---s~ARALLr~~~ILiLDEaTS~------------LD~~te~~I~~~l 1094 (1156)
...... +..++..+.+|-. ..++|+..+|++| |||+.- -|.+....|.+.+
T Consensus 125 -~~~~~~-~~~~l~~Lsgg~~~~~~i~ia~tn~p~~L--D~al~r~gRfd~~i~~~~P~~~~r~~il~~~ 190 (274)
T 2x8a_A 125 -GASVRV-VNQLLTEMDGLEARQQVFIMAATNRPDII--DPAILRPGRLDKTLFVGLPPPADRLAILKTI 190 (274)
T ss_dssp ---CTTH-HHHHHHHHHTCCSTTCEEEEEEESCGGGS--CHHHHSTTSSCEEEECCSCCHHHHHHHHHHH
T ss_pred -hHHHHH-HHHHHHhhhcccccCCEEEEeecCChhhC--CHhhcCcccCCeEEEeCCcCHHHHHHHHHHH
Confidence 000000 1122333333322 2379999999985 999752 2566666665544
|
| >1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=98.31 E-value=2.1e-07 Score=95.99 Aligned_cols=80 Identities=20% Similarity=0.220 Sum_probs=60.6
Q ss_pred CCCceeeCCCCCCHHHHHHHHhhcccC-CCceEE----------EcCeeCCCCChHHHhhcCeeeccccccccccchhcc
Q 037346 960 NLPLVLRGRTGSGKSTLIQTLFRIVES-TAGHIL----------IDGKDISLIGLHDLRTRLSIIPQDPTMFEGTTRSNL 1028 (1156)
Q Consensus 960 ~~~~vL~G~SGsGKSTL~~lL~rl~~p-~~G~I~----------idG~di~~i~~~~LR~~i~~VpQdp~LF~gTIr~Nl 1028 (1156)
+..++|.||||||||||+++|.+++++ ..|.|. +||++...++.+.+++. +.|+.+++.+++.+|.
T Consensus 5 g~~i~i~GpsGsGKSTL~~~L~~~~~~~~~~~i~~ttr~~~~ge~~g~~~~~~~~~~~~~~---~~~~~~l~~~~~~~n~ 81 (180)
T 1kgd_A 5 RKTLVLLGAHGVGRRHIKNTLITKHPDRFAYPIPHTTRPPKKDEENGKNYYFVSHDQMMQD---ISNNEYLEYGSHEDAM 81 (180)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHCTTTEECCCCEECSCC---CCBTTTBEECCHHHHHHH---HHTTCEEEEEEETTEE
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhCCccEEEeeeccCCCCCccccCCCeeEEeCHHHHHHH---HHcCCceEEEEEcCcc
Confidence 445789999999999999999999863 445543 47777777888888874 5799999999999994
Q ss_pred CCCCCCCHHHHHHHHHH
Q 037346 1029 DPLEEHADEQIWEALDK 1045 (1156)
Q Consensus 1029 ~~~~~~~deei~~al~~ 1045 (1156)
++ .+.+++.++++.
T Consensus 82 -yg--~~~~~i~~~l~~ 95 (180)
T 1kgd_A 82 -YG--TKLETIRKIHEQ 95 (180)
T ss_dssp -EE--EEHHHHHHHHHT
T ss_pred -cc--ccHHHHHHHHHC
Confidence 32 235567666654
|
| >1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A* | Back alignment and structure |
|---|
Probab=98.30 E-value=2.2e-07 Score=103.61 Aligned_cols=118 Identities=17% Similarity=0.196 Sum_probs=77.4
Q ss_pred CCCCceeeCCCCCCHHHHHHHHhhcccCCCceEEEcCeeCCCCChH-HHhhcCeeeccccccccccchhccCCC---CCC
Q 037346 959 PNLPLVLRGRTGSGKSTLIQTLFRIVESTAGHILIDGKDISLIGLH-DLRTRLSIIPQDPTMFEGTTRSNLDPL---EEH 1034 (1156)
Q Consensus 959 ~~~~~vL~G~SGsGKSTL~~lL~rl~~p~~G~I~idG~di~~i~~~-~LR~~i~~VpQdp~LF~gTIr~Nl~~~---~~~ 1034 (1156)
++..+++.|++|+||||++..|++++.+.+|+|.+.|.|+..-... +++. + .-+.|++.. ...
T Consensus 97 ~~~~i~i~g~~G~GKTT~~~~la~~~~~~~~~v~l~~~d~~~~~~~~ql~~----~---------~~~~~l~~~~~~~~~ 163 (295)
T 1ls1_A 97 DRNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAADTQRPAAREQLRL----L---------GEKVGVPVLEVMDGE 163 (295)
T ss_dssp SSEEEEEECCTTTTHHHHHHHHHHHHHHTTCCEEEEECCSSCHHHHHHHHH----H---------HHHHTCCEEECCTTC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEecCCcccHhHHHHHHH----h---------cccCCeEEEEcCCCC
Confidence 3444677899999999999999999999999999999887653221 1110 0 001233211 111
Q ss_pred CHHHHHHHHHHcCCChHHHhhcCCccccccccccCCCEEEEecC-CcCCCHHHHHHHHHHHHHhcCCceEEEee
Q 037346 1035 ADEQIWEALDKCQLGDEVRKKKGKLDSQGRVLLKKSKVLVLDEA-TASVDTATDNQIQQTLRQHFSDCTVVTIA 1107 (1156)
Q Consensus 1035 ~deei~~al~~~~l~~~i~~lp~gl~s~ARALLr~~~ILiLDEa-TS~LD~~te~~I~~~l~~~~~~~TvI~Ia 1107 (1156)
...++. .+..+++..++++++|+||| |+++|...-..+.+..+....+.+++++.
T Consensus 164 ~p~~l~------------------~~~l~~~~~~~~D~viiDtpp~~~~d~~~~~~l~~~~~~~~~~~~~lv~~ 219 (295)
T 1ls1_A 164 SPESIR------------------RRVEEKARLEARDLILVDTAGRLQIDEPLMGELARLKEVLGPDEVLLVLD 219 (295)
T ss_dssp CHHHHH------------------HHHHHHHHHHTCCEEEEECCCCSSCCHHHHHHHHHHHHHHCCSEEEEEEE
T ss_pred CHHHHH------------------HHHHHHHHhCCCCEEEEeCCCCccccHHHHHHHHHHhhhcCCCEEEEEEe
Confidence 122220 01124445578999999999 99999988888888777665666666554
|
| >2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A* | Back alignment and structure |
|---|
Probab=98.28 E-value=2.6e-08 Score=113.39 Aligned_cols=63 Identities=22% Similarity=0.283 Sum_probs=53.9
Q ss_pred CCCCceeeCCCCCCHHHHHHHHhhcccCCCceEEEcCeeCCCCC----hHHHhhcCeeecccccccc
Q 037346 959 PNLPLVLRGRTGSGKSTLIQTLFRIVESTAGHILIDGKDISLIG----LHDLRTRLSIIPQDPTMFE 1021 (1156)
Q Consensus 959 ~~~~~vL~G~SGsGKSTL~~lL~rl~~p~~G~I~idG~di~~i~----~~~LR~~i~~VpQdp~LF~ 1021 (1156)
++..++|.|++|||||||++.|.|++.|++|+|.+.|.|+.+.. ....|+++++++|++.+|.
T Consensus 54 ~g~~v~i~G~~GaGKSTLl~~l~g~~~~~~g~v~i~~~d~~~~~~~~~~~~~~~~i~~v~q~~~~~~ 120 (337)
T 2qm8_A 54 RAIRVGITGVPGVGKSTTIDALGSLLTAAGHKVAVLAVDPSSTRTGGSILGDKTRMARLAIDRNAFI 120 (337)
T ss_dssp CSEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEEECGGGGSSCCCSSCCGGGSTTGGGCTTEEE
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHhhhhCCCEEEEEEEcCcccccccchHHHhhhheeeccCccccc
Confidence 34456899999999999999999999999999999999986543 2346788999999999885
|
| >1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B* | Back alignment and structure |
|---|
Probab=98.28 E-value=6.2e-08 Score=100.98 Aligned_cols=128 Identities=15% Similarity=0.174 Sum_probs=71.3
Q ss_pred EEEEEcCCCCChHHHHHHHhCCCCC-----------CCcEEEEcCeE-EE-EecCCcC--CCccHHHHh------hcC-C
Q 037346 388 RVAVCGTVGSGKSSCLSCILGGVPK-----------ESGIIRLCGTK-AY-VAQSPWI--QSGKIEENI------LFG-K 445 (1156)
Q Consensus 388 ~~~ivG~~GsGKSTll~~i~g~~~~-----------~~G~i~~~g~~-~~-v~Q~~~~--~~~ti~eni------~~~-~ 445 (1156)
.++|+|++|||||||++.+.|...+ ..|+|.++|.. .+ +...+-. +...+.... .+- .
T Consensus 31 kv~lvG~~g~GKSTLl~~l~~~~~~~~~~~t~~~~~~~~~i~~~g~~~~~~i~Dt~g~~~~~~~~~~~~~~~~~~i~v~d 110 (191)
T 1oix_A 31 KVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGLERYRAITSAYYRGAVGALLVYD 110 (191)
T ss_dssp EEEEEECTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEEEEEEETTEEEEEEEEEECSCCSSSCCCHHHHTTCCEEEEEEE
T ss_pred EEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEECCCCcchhhhhHHHhhcCCEEEEEEE
Confidence 6899999999999999999998765 47888888852 11 0111110 111111111 000 0
Q ss_pred CCCHHHH-------HHHHHHhCCchhhhhCCCCCccccccCCCCCCHHHHHHHHHHHhhccCCCeeeeeCCCCCcCHHHH
Q 037346 446 EMDRERY-------ERVLEACSLKKDLEVLPFGDQTIIGERGINLSGGQKQRIQIARPLYQDADIFLLDDPFSPVDDHTG 518 (1156)
Q Consensus 446 ~~~~~~~-------~~~~~~~~l~~~~~~~~~g~~t~v~~~g~~LSgGqkqRi~lAral~~~~~illlDep~s~lD~~~~ 518 (1156)
..+...+ ..+.+.+.... | --.++.+ ..|..-..+...+||++..+|+++++| ||++|....
T Consensus 111 ~~~~~s~~~~~~~~~~~~~~~~~~~-----~---i~~v~nK-~Dl~~~~~~~~~~a~~l~~~~~~~~ld--~Sald~~~v 179 (191)
T 1oix_A 111 IAKHLTYENVERWLKELRDHADSNI-----V---IMLVGNK-SDLRHLRAVPTDEARAFAEKNGLSFIE--TSALDSTNV 179 (191)
T ss_dssp TTCHHHHHTHHHHHHHHHHHSCTTC-----E---EEEEEEC-GGGGGGCCSCHHHHHHHHHHTTCEEEE--CCTTTCTTH
T ss_pred CcCHHHHHHHHHHHHHHHHhcCCCC-----c---EEEEEEC-cccccccccCHHHHHHHHHHcCCEEEE--EeCCCCCCH
Confidence 0112111 11111111000 0 0111222 112222223478899999999999999 999999999
Q ss_pred HHHHHHHH
Q 037346 519 AHLFKFCW 526 (1156)
Q Consensus 519 ~~i~~~~~ 526 (1156)
..+++.+.
T Consensus 180 ~~l~~~l~ 187 (191)
T 1oix_A 180 EAAFQTIL 187 (191)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 98888664
|
| >3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus} | Back alignment and structure |
|---|
Probab=98.27 E-value=1.1e-07 Score=117.40 Aligned_cols=138 Identities=13% Similarity=0.055 Sum_probs=90.7
Q ss_pred CCccccceEEeeCCeEEEEEcCCCCChHHHHHHHhCCCCCCC-cEEEEcC--------eEEEEecCC-------------
Q 037346 373 NPTLRNINLKVFHGMRVAVCGTVGSGKSSCLSCILGGVPKES-GIIRLCG--------TKAYVAQSP------------- 430 (1156)
Q Consensus 373 ~~~l~~i~l~i~~g~~~~ivG~~GsGKSTll~~i~g~~~~~~-G~i~~~g--------~~~~v~Q~~------------- 430 (1156)
..+++++++.+++|+.++|+||+|||||||+++|.|.+++.. |.+.+++ .++|+||..
T Consensus 47 ~~~l~~l~~~i~~g~~vll~Gp~GtGKTtlar~ia~~l~~~~~~~~~~~~~~~~~~~p~i~~~p~g~~~~~~e~~~~~~~ 126 (604)
T 3k1j_A 47 EHAVEVIKTAANQKRHVLLIGEPGTGKSMLGQAMAELLPTETLEDILVFPNPEDENMPRIKTVPACQGRRIVEKYREKAK 126 (604)
T ss_dssp HHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHTSCCSSCEEEEEECCTTCTTSCEEEEEETTHHHHHHHHHHHHHH
T ss_pred hhhHhhccccccCCCEEEEEeCCCCCHHHHHHHHhccCCcccCCeEEEeCCcccccCCcEEEEecchHHHHHHHHHHhhc
Confidence 468999999999999999999999999999999999999887 6777644 356776643
Q ss_pred ---------cCC-CccHHHHhhcCCCCC---------HHHHHHHHHHhCCchhhhhCCCCCccccccCCCCCCHHHHHHH
Q 037346 431 ---------WIQ-SGKIEENILFGKEMD---------RERYERVLEACSLKKDLEVLPFGDQTIIGERGINLSGGQKQRI 491 (1156)
Q Consensus 431 ---------~~~-~~ti~eni~~~~~~~---------~~~~~~~~~~~~l~~~~~~~~~g~~t~v~~~g~~LSgGqkqRi 491 (1156)
|.+ ..++.+|+..+.... ...+.. .+..... -......+|+|++|++
T Consensus 127 ~~~~~r~~~~~~~~~~~~~nl~v~~~~~~~~~~v~~~~~~~~~---------L~G~~~~-----~~~~~g~~~~g~~~~i 192 (604)
T 3k1j_A 127 SQESVKSSNMRLKSTVLVPKLLVDNCGRTKAPFIDATGAHAGA---------LLGDVRH-----DPFQSGGLGTPAHERV 192 (604)
T ss_dssp HHTCC-----------CCCEEEECCTTCSSCCEEECTTCCHHH---------HHCEECC-----CCC----CCCCGGGGE
T ss_pred cchhhhhhcccccccccccceeeccccCCCCCEEEcCCCCHHh---------cCceEEe-----chhhcCCccccccccc
Confidence 111 113333333221000 000000 0000000 0011235899999999
Q ss_pred HHHHhhccCCCeeeeeCCCCCcCHHHHHHHHHHH
Q 037346 492 QIARPLYQDADIFLLDDPFSPVDDHTGAHLFKFC 525 (1156)
Q Consensus 492 ~lAral~~~~~illlDep~s~lD~~~~~~i~~~~ 525 (1156)
..++....++.+|+|||+-. |++.....+.+.+
T Consensus 193 ~~g~~~~a~~gvL~LDEi~~-l~~~~q~~Ll~~L 225 (604)
T 3k1j_A 193 EPGMIHRAHKGVLFIDEIAT-LSLKMQQSLLTAM 225 (604)
T ss_dssp ECCHHHHTTTSEEEETTGGG-SCHHHHHHHHHHH
T ss_pred cCceeeecCCCEEEEechhh-CCHHHHHHHHHHH
Confidence 99999999999999999887 7988888776654
|
| >1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A* | Back alignment and structure |
|---|
Probab=98.26 E-value=6.1e-07 Score=100.91 Aligned_cols=103 Identities=13% Similarity=0.146 Sum_probs=66.3
Q ss_pred ceeeCCCCCCHHHHHHHHhhccc--CCCceEEE---cCeeCCCCChHHHhhcCeeecccccccc-ccchhccCCCCCCCH
Q 037346 963 LVLRGRTGSGKSTLIQTLFRIVE--STAGHILI---DGKDISLIGLHDLRTRLSIIPQDPTMFE-GTTRSNLDPLEEHAD 1036 (1156)
Q Consensus 963 ~vL~G~SGsGKSTL~~lL~rl~~--p~~G~I~i---dG~di~~i~~~~LR~~i~~VpQdp~LF~-gTIr~Nl~~~~~~~d 1036 (1156)
++|.|+||||||||+++|.|++. |++|+|.+ ||.+.. ...|+.++++ |+..++. -|+.+|+.
T Consensus 83 igI~G~~GsGKSTl~~~L~~~l~~~~~~G~i~vi~~d~~~~~----~~~~~~~~~v-q~~~~~~~~~~~~~~~------- 150 (308)
T 1sq5_A 83 ISIAGSVAVGKSTTARVLQALLSRWPEHRRVELITTDGFLHP----NQVLKERGLM-KKKGFPESYDMHRLVK------- 150 (308)
T ss_dssp EEEEECTTSSHHHHHHHHHHHHTTSTTCCCEEEEEGGGGBCC----HHHHHHHTCT-TCTTSGGGBCHHHHHH-------
T ss_pred EEEECCCCCCHHHHHHHHHHHHhhCCCCCeEEEEecCCccCc----HHHHHhCCEe-ecCCCCCCccHHHHHH-------
Confidence 57899999999999999999998 99999999 998753 3456778888 7654432 24444432
Q ss_pred HHHHHHHHHc-CCChHHHhhcCCcccc-------ccccccCCCEEEEecCCcCCCH
Q 037346 1037 EQIWEALDKC-QLGDEVRKKKGKLDSQ-------GRVLLKKSKVLVLDEATASVDT 1084 (1156)
Q Consensus 1037 eei~~al~~~-~l~~~i~~lp~gl~s~-------ARALLr~~~ILiLDEaTS~LD~ 1084 (1156)
.+... +-.+.+ ..| .++.. +.+.+.+++++|+|.|....|.
T Consensus 151 -----~~~~l~~~~~~i-~~P-~~~~~~~~~~~~~~~~~~~~~ivIlEG~~l~~~~ 199 (308)
T 1sq5_A 151 -----FVSDLKSGVPNV-TAP-VYSHLIYDVIPDGDKTVVQPDILILEGLNVLQSG 199 (308)
T ss_dssp -----HHHHHTTTCSCE-EEC-CEETTTTEECTTCCEEEC-CCEEEEECTTTTCCG
T ss_pred -----HHHHHhCCCCce-ecc-cccccccCcccccceecCCCCEEEECchhhCCCc
Confidence 11111 111101 112 11111 2345678899999999887663
|
| >2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ... | Back alignment and structure |
|---|
Probab=98.24 E-value=1.5e-06 Score=99.27 Aligned_cols=142 Identities=20% Similarity=0.277 Sum_probs=83.4
Q ss_pred EeeCCeEEEEEcCCCCChHHHHHHHhCCCCCCCcEEEEcCeEEEEecCCcCCCccHHHHhhcCCCCCHHHHHHHHHHhCC
Q 037346 382 KVFHGMRVAVCGTVGSGKSSCLSCILGGVPKESGIIRLCGTKAYVAQSPWIQSGKIEENILFGKEMDRERYERVLEACSL 461 (1156)
Q Consensus 382 ~i~~g~~~~ivG~~GsGKSTll~~i~g~~~~~~G~i~~~g~~~~v~Q~~~~~~~ti~eni~~~~~~~~~~~~~~~~~~~l 461 (1156)
-+++|+++.|.||+|||||||+..++....... +.+.|+.-+... +.. ..+..+.
T Consensus 57 Gl~~G~iv~I~G~pGsGKTtLal~la~~~~~~g------~~vlyi~~E~~~---------------~~~----~a~~lG~ 111 (349)
T 2zr9_A 57 GLPRGRVIEIYGPESSGKTTVALHAVANAQAAG------GIAAFIDAEHAL---------------DPE----YAKKLGV 111 (349)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHHHHTT------CCEEEEESSCCC---------------CHH----HHHHTTC
T ss_pred CccCCeEEEEECCCCCCHHHHHHHHHHHHHhCC------CeEEEEECCCCc---------------CHH----HHHHcCC
Confidence 588999999999999999999888876554332 355666654321 111 1222332
Q ss_pred chhhhhCCCCCccccccCCCCCCHHHHHHHHHHHhhccC--CCeeeeeCCCCCc----------CH---HHHH---HHHH
Q 037346 462 KKDLEVLPFGDQTIIGERGINLSGGQKQRIQIARPLYQD--ADIFLLDDPFSPV----------DD---HTGA---HLFK 523 (1156)
Q Consensus 462 ~~~~~~~~~g~~t~v~~~g~~LSgGqkqRi~lAral~~~--~~illlDep~s~l----------D~---~~~~---~i~~ 523 (1156)
.. +.+ .+-. ..++ .|-+.+++++..+ |+++++|++++.+ |+ ...+ +.+.
T Consensus 112 ~~--~~l------~i~~---~~~~--e~~l~~~~~l~~~~~~~lIVIDsl~~l~~~~e~~~~~gd~~~~~q~r~~~~~l~ 178 (349)
T 2zr9_A 112 DT--DSL------LVSQ---PDTG--EQALEIADMLVRSGALDIIVIDSVAALVPRAEIEGEMGDSHVGLQARLMSQALR 178 (349)
T ss_dssp CG--GGC------EEEC---CSSH--HHHHHHHHHHHTTTCCSEEEEECGGGCCCHHHHTTC----CCCHHHHHHHHHHH
T ss_pred CH--HHe------EEec---CCCH--HHHHHHHHHHHhcCCCCEEEEcChHhhcchhhhccccccchhhHHHHHHHHHHH
Confidence 21 111 0100 1133 2345678888754 9999999999988 33 1111 1222
Q ss_pred HHH---hcCCCEEEEEccCCCc----------------cc-cCCEEEEEeCCeEEEcc
Q 037346 524 FCW---VSSSKTVIYATHQVEF----------------LP-AADLILVIKDGKITQAG 561 (1156)
Q Consensus 524 ~~~---~~~~~tvi~vtH~~~~----------------~~-~~d~i~~l~~G~i~~~g 561 (1156)
.+. ...+.|+|+++|-... +. .||.++.++.+++...|
T Consensus 179 ~L~~~a~~~~~tVI~inh~~~~~~~~~~~p~~~~gg~~l~~~ad~~l~lrr~~~~k~g 236 (349)
T 2zr9_A 179 KMTGALNNSGTTAIFINELREKIGVMFGSPETTTGGKALKFYASVRLDVRRIETLKDG 236 (349)
T ss_dssp HHHHHHHHHTCEEEEEEECC-----------CCSSHHHHHHHCSEEEEEEEEEEECSS
T ss_pred HHHHHHHHhCCEEEEEeccccccCcccCCCcccCCchHhhhccceEEEEEEeeeeecC
Confidence 221 2458899999996431 33 38888888776665444
|
| >2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ... | Back alignment and structure |
|---|
Probab=98.24 E-value=2.9e-06 Score=96.77 Aligned_cols=141 Identities=18% Similarity=0.223 Sum_probs=84.8
Q ss_pred cCCCCceeeCCCCCCHHHHHHHHhhcccCCCce-EEEcCeeCCCCChHHHhhcCeeeccccccccccchhccCCCCCCCH
Q 037346 958 APNLPLVLRGRTGSGKSTLIQTLFRIVESTAGH-ILIDGKDISLIGLHDLRTRLSIIPQDPTMFEGTTRSNLDPLEEHAD 1036 (1156)
Q Consensus 958 ~~~~~~vL~G~SGsGKSTL~~lL~rl~~p~~G~-I~idG~di~~i~~~~LR~~i~~VpQdp~LF~gTIr~Nl~~~~~~~d 1036 (1156)
+++.-+.|.|++|||||||+..+..-.....|. +++|... ..+. ...+++++-+|+..++ .+.+-
T Consensus 59 ~~G~iv~I~G~pGsGKTtLal~la~~~~~~g~~vlyi~~E~--~~~~-~~a~~lG~~~~~l~i~-----------~~~~~ 124 (349)
T 2zr9_A 59 PRGRVIEIYGPESSGKTTVALHAVANAQAAGGIAAFIDAEH--ALDP-EYAKKLGVDTDSLLVS-----------QPDTG 124 (349)
T ss_dssp ETTSEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSC--CCCH-HHHHHTTCCGGGCEEE-----------CCSSH
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECCC--CcCH-HHHHHcCCCHHHeEEe-----------cCCCH
Confidence 455556778999999999988887655444554 5566543 1222 2345677666654432 12233
Q ss_pred HHHHHHHHHcCCChHHHhhcCCcccccccccc--CCCEEEEecCCcCC----------CH---HHHHHHHHHHHHh----
Q 037346 1037 EQIWEALDKCQLGDEVRKKKGKLDSQGRVLLK--KSKVLVLDEATASV----------DT---ATDNQIQQTLRQH---- 1097 (1156)
Q Consensus 1037 eei~~al~~~~l~~~i~~lp~gl~s~ARALLr--~~~ILiLDEaTS~L----------D~---~te~~I~~~l~~~---- 1097 (1156)
+++.+ .++++.+ +|+++|+||+|+-+ |+ ...+.+.+.++++
T Consensus 125 e~~l~--------------------~~~~l~~~~~~~lIVIDsl~~l~~~~e~~~~~gd~~~~~q~r~~~~~l~~L~~~a 184 (349)
T 2zr9_A 125 EQALE--------------------IADMLVRSGALDIIVIDSVAALVPRAEIEGEMGDSHVGLQARLMSQALRKMTGAL 184 (349)
T ss_dssp HHHHH--------------------HHHHHHTTTCCSEEEEECGGGCCCHHHHTTC----CCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHH--------------------HHHHHHhcCCCCEEEEcChHhhcchhhhccccccchhhHHHHHHHHHHHHHHHHH
Confidence 33322 1344443 48999999999988 32 1122344444433
Q ss_pred -cCCceEEEeecCccc----------------c-cccCEEEEEeCcEEeeecC
Q 037346 1098 -FSDCTVVTIAHRITS----------------V-LDSAMVLLLNHGLIKEYDS 1132 (1156)
Q Consensus 1098 -~~~~TvI~IaHrl~t----------------i-~~~D~I~Vl~~G~IvE~G~ 1132 (1156)
..++|||+++|-... + ..||.++.+..+++...|+
T Consensus 185 ~~~~~tVI~inh~~~~~~~~~~~p~~~~gg~~l~~~ad~~l~lrr~~~~k~g~ 237 (349)
T 2zr9_A 185 NNSGTTAIFINELREKIGVMFGSPETTTGGKALKFYASVRLDVRRIETLKDGT 237 (349)
T ss_dssp HHHTCEEEEEEECC-----------CCSSHHHHHHHCSEEEEEEEEEEECSSS
T ss_pred HHhCCEEEEEeccccccCcccCCCcccCCchHhhhccceEEEEEEeeeeecCc
Confidence 138999999995431 2 3589999998887765554
|
| >3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=98.24 E-value=2.8e-07 Score=96.96 Aligned_cols=84 Identities=14% Similarity=0.203 Sum_probs=63.1
Q ss_pred cCCCCceeeCCCCCCHHHHHHHHhhcccCCCceEEEcCeeCCCCChHHHhhcCeeeccccccccc-cchhccCC----CC
Q 037346 958 APNLPLVLRGRTGSGKSTLIQTLFRIVESTAGHILIDGKDISLIGLHDLRTRLSIIPQDPTMFEG-TTRSNLDP----LE 1032 (1156)
Q Consensus 958 ~~~~~~vL~G~SGsGKSTL~~lL~rl~~p~~G~I~idG~di~~i~~~~LR~~i~~VpQdp~LF~g-TIr~Nl~~----~~ 1032 (1156)
.++..++|.||||||||||+++|.|++ | .+.++|.++...+....+..+++++|++.+|.. +..+|+.. .+
T Consensus 5 ~~g~ii~l~Gp~GsGKSTl~~~L~~~~-~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (205)
T 3tr0_A 5 NKANLFIISAPSGAGKTSLVRALVKAL-A---EIKISISHTTRPKRPGDQEGVDYFFIDETRFQAMVKEGAFLEHATIYE 80 (205)
T ss_dssp CCCCEEEEECCTTSCHHHHHHHHHHHS-S---SEEECCCEECSCCCTTCCBTTTBEECCHHHHHHHHHHTCEEEEEEETT
T ss_pred CCCcEEEEECcCCCCHHHHHHHHHhhC-C---CeEEeceeccCCCchhHhcCceEEeccHHHHHHHHhcCcEEeeeeeec
Confidence 456667899999999999999999997 3 689999888887766678889999999988865 45555421 11
Q ss_pred ---CCCHHHHHHHHHH
Q 037346 1033 ---EHADEQIWEALDK 1045 (1156)
Q Consensus 1033 ---~~~deei~~al~~ 1045 (1156)
....+++.++++.
T Consensus 81 ~~~~~~~~~i~~~l~~ 96 (205)
T 3tr0_A 81 RHYGTEKDWVLRQLKA 96 (205)
T ss_dssp EEEEEEHHHHHHHHHT
T ss_pred ccccchHHHHHHHHHc
Confidence 1224567776665
|
| >1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A | Back alignment and structure |
|---|
Probab=98.23 E-value=1.2e-08 Score=117.33 Aligned_cols=128 Identities=13% Similarity=0.098 Sum_probs=81.9
Q ss_pred CccccceEEeeCCeEEEEEcCCCCChHHHHHHHhCCCCCCCcEEEE-c----C---eEEEEecCCcCCCccHHHHhhcCC
Q 037346 374 PTLRNINLKVFHGMRVAVCGTVGSGKSSCLSCILGGVPKESGIIRL-C----G---TKAYVAQSPWIQSGKIEENILFGK 445 (1156)
Q Consensus 374 ~~l~~i~l~i~~g~~~~ivG~~GsGKSTll~~i~g~~~~~~G~i~~-~----g---~~~~v~Q~~~~~~~ti~eni~~~~ 445 (1156)
.+++++++.+++|++++|+||+|||||||+++|+|. .+|.+.. + + .+++++|.+.+ +.|++.+..
T Consensus 157 ~~l~~~~~~i~~~~~i~l~G~~GsGKSTl~~~l~~~---~~g~~~~~~~~~~~~~~~lg~~~q~~~~----l~dd~~~~~ 229 (377)
T 1svm_A 157 DFLKCMVYNIPKKRYWLFKGPIDSGKTTLAAALLEL---CGGKALNVNLPLDRLNFELGVAIDQFLV----VFEDVKGTG 229 (377)
T ss_dssp HHHHHHHHCCTTCCEEEEECSTTSSHHHHHHHHHHH---HCCEEECCSSCTTTHHHHHGGGTTCSCE----EETTCCCST
T ss_pred HHHHhcccccCCCCEEEEECCCCCCHHHHHHHHHhh---cCCcEEEEeccchhHHHHHHHhcchhHH----HHHHHHHHH
Confidence 579999999999999999999999999999999985 4677655 2 1 24555665432 233333222
Q ss_pred C----C---CH----HHHHHHHHH---hCCch----hhh-hCCCCCccccccCCCCCCHHHHHHHHHHHhhccCCCeee-
Q 037346 446 E----M---DR----ERYERVLEA---CSLKK----DLE-VLPFGDQTIIGERGINLSGGQKQRIQIARPLYQDADIFL- 505 (1156)
Q Consensus 446 ~----~---~~----~~~~~~~~~---~~l~~----~~~-~~~~g~~t~v~~~g~~LSgGqkqRi~lAral~~~~~ill- 505 (1156)
. . +. ..+...+.. ..+.. .+. .++.| .+..+...+++|++||++.+.+++.+|++++
T Consensus 230 ~~~r~l~~~~~~~~~~~l~~~ldG~v~v~~~tn~~~~l~alf~pg---~ld~~~~~l~~~~~~rl~~~~~l~~~pDLliy 306 (377)
T 1svm_A 230 GESRDLPSGQGINNLDNLRDYLDGSVKVNLEKKHLNKRTQIFPPG---IVTMNEYSVPKTLQARFVKQIDFRPKDYLKHC 306 (377)
T ss_dssp TTTTTCCCCSHHHHHHTTHHHHHCSSCEEECCSSSCCEEECCCCE---EEEECSCCCCHHHHTTEEEEEECCCCHHHHHH
T ss_pred HHHhhccccCcchHHHHHHHHhcCCCeEeeccCchhhHHHhhcCc---ccChhHHhhcHHHHHHHhhhhccCCCCCeEEE
Confidence 1 0 10 111112110 00000 000 11111 2345566799999999999999999999988
Q ss_pred eeCCCC
Q 037346 506 LDDPFS 511 (1156)
Q Consensus 506 lDep~s 511 (1156)
||+|+.
T Consensus 307 Ld~~~~ 312 (377)
T 1svm_A 307 LERSEF 312 (377)
T ss_dssp HHTCTH
T ss_pred EeCCHH
Confidence 999987
|
| >2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A | Back alignment and structure |
|---|
Probab=98.22 E-value=1.2e-06 Score=104.13 Aligned_cols=166 Identities=11% Similarity=0.069 Sum_probs=100.1
Q ss_pred CccccceEEeeCCeEEEEEcCCCCChHHHHHHHhCCCCCCCcEEEEcCeEEEEecCCcCCCccHHHH------------h
Q 037346 374 PTLRNINLKVFHGMRVAVCGTVGSGKSSCLSCILGGVPKESGIIRLCGTKAYVAQSPWIQSGKIEEN------------I 441 (1156)
Q Consensus 374 ~~l~~i~l~i~~g~~~~ivG~~GsGKSTll~~i~g~~~~~~G~i~~~g~~~~v~Q~~~~~~~ti~en------------i 441 (1156)
+.|+++..-+++|+++.|.|++|+|||||+..+++...+..| ..+.|++-+-. ...+.+. +
T Consensus 191 ~~LD~~~gGl~~G~liiI~G~pG~GKTtl~l~ia~~~~~~~g-----~~Vl~~s~E~s--~~~l~~r~~~~~~~~~~~~l 263 (454)
T 2r6a_A 191 TELDRMTSGFQRSDLIIVAARPSVGKTAFALNIAQNVATKTN-----ENVAIFSLEMS--AQQLVMRMLCAEGNINAQNL 263 (454)
T ss_dssp HHHHHHHSSBCTTCEEEEECCTTSCHHHHHHHHHHHHHHHSS-----CCEEEEESSSC--HHHHHHHHHHHHHTCCHHHH
T ss_pred HHHHhhcCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHhCC-----CcEEEEECCCC--HHHHHHHHHHHHcCCCHHHH
Confidence 468888888999999999999999999999999987665433 14555554311 1112222 1
Q ss_pred hcCCCCCHHHHHHHHHHhCCchhhhhCCCCCccccccCCCCCCHHHHHHHHHHHhhc--cCCCeeeeeCCCCCcCHH---
Q 037346 442 LFGKEMDRERYERVLEACSLKKDLEVLPFGDQTIIGERGINLSGGQKQRIQIARPLY--QDADIFLLDDPFSPVDDH--- 516 (1156)
Q Consensus 442 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~t~v~~~g~~LSgGqkqRi~lAral~--~~~~illlDep~s~lD~~--- 516 (1156)
.-| ..+++.+.++.++.+. +...| -.+.+ ...+|++|.+ +.+|++. .+|+++++|+++...+..
T Consensus 264 ~~g-~l~~~~~~~~~~a~~~---l~~~~----l~i~d-~~~~s~~~i~--~~~~~l~~~~~~~livID~l~~~~~~~~~~ 332 (454)
T 2r6a_A 264 RTG-KLTPEDWGKLTMAMGS---LSNAG----IYIDD-TPSIRVSDIR--AKCRRLKQESGLGMIVIDYLQLIQGSGRSK 332 (454)
T ss_dssp HTS-CCCHHHHHHHHHHHHH---HHSSC----EEEEC-CTTCCHHHHH--HHHHHHHTTTCCCEEEEECGGGSCCSCC--
T ss_pred hcC-CCCHHHHHHHHHHHHH---HhcCC----EEEEC-CCCCCHHHHH--HHHHHHHHHcCCCEEEEccHHHhccCCCCC
Confidence 112 2333333333333211 11111 11111 2468999876 5566665 689999999999887431
Q ss_pred -----HHHHHHHHHH---hcCCCEEEEEcc---------C--CC--------ccc-cCCEEEEEeCCeE
Q 037346 517 -----TGAHLFKFCW---VSSSKTVIYATH---------Q--VE--------FLP-AADLILVIKDGKI 557 (1156)
Q Consensus 517 -----~~~~i~~~~~---~~~~~tvi~vtH---------~--~~--------~~~-~~d~i~~l~~G~i 557 (1156)
....+.+.+. +..+.+||+++| + +. .+. .||.|++|..++.
T Consensus 333 ~~~~~~i~~i~~~Lk~lAke~~i~vi~~sql~r~~e~~~~~~p~lsdlr~Sg~ie~~aD~vi~l~r~~~ 401 (454)
T 2r6a_A 333 ENRQQEVSEISRSLKALARELEVPVIALSQLSRSVEQRQDKRPMMSDIRESGSIEQDADIVAFLYRDDY 401 (454)
T ss_dssp --CHHHHHHHHHHHHHHHHHHTCCEEEEECCCTTSTTC---CCCTHHHHTTCSHHHHCSEEEEEEETTC
T ss_pred CCHHHHHHHHHHHHHHHHHHhCCeEEEEecCCcccccCCCCCCcHHHhhccchhHhhCCEEEEEecccc
Confidence 1123333332 234789999999 2 32 343 4999999986654
|
| >1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8 | Back alignment and structure |
|---|
Probab=98.22 E-value=1.4e-07 Score=105.00 Aligned_cols=90 Identities=17% Similarity=0.230 Sum_probs=51.7
Q ss_pred CCCceeeCCCCCCHHHHHHHHhhcccCCCceEEE---cCeeCCCCChHHHhhcCeeecccccccc-----ccchhccC-C
Q 037346 960 NLPLVLRGRTGSGKSTLIQTLFRIVESTAGHILI---DGKDISLIGLHDLRTRLSIIPQDPTMFE-----GTTRSNLD-P 1030 (1156)
Q Consensus 960 ~~~~vL~G~SGsGKSTL~~lL~rl~~p~~G~I~i---dG~di~~i~~~~LR~~i~~VpQdp~LF~-----gTIr~Nl~-~ 1030 (1156)
++..+|.|+||||||||+++|.|+..|..|+|.+ +|.++.... +..+..+++|+|+|-++. -|+ +|+. .
T Consensus 173 G~~~~lvG~sG~GKSTLln~L~g~~~~~~G~I~~~~~~G~~tt~~~-~~~~~~~g~v~dtpg~~~~~l~~lt~-e~l~~~ 250 (307)
T 1t9h_A 173 DKTTVFAGQSGVGKSSLLNAISPELGLRTNEISEHLGRGKHTTRHV-ELIHTSGGLVADTPGFSSLEFTDIEE-EELGYT 250 (307)
T ss_dssp TSEEEEEESHHHHHHHHHHHHCC-------------------CCCC-CEEEETTEEEESSCSCSSCCCTTCCH-HHHGGG
T ss_pred CCEEEEECCCCCCHHHHHHHhcccccccccceeeecCCCcccccHH-HHhhcCCEEEecCCCccccccccCCH-HHHHHH
Confidence 4556899999999999999999999999999999 898877643 222223899999997654 366 7772 1
Q ss_pred C------------C-----CCCHHHHHHHHHHcCCChH
Q 037346 1031 L------------E-----EHADEQIWEALDKCQLGDE 1051 (1156)
Q Consensus 1031 ~------------~-----~~~deei~~al~~~~l~~~ 1051 (1156)
+ . ...+..+.++++..++.+.
T Consensus 251 f~~~~~~~~~C~f~~c~h~~e~~~~v~~aLe~~~L~~~ 288 (307)
T 1t9h_A 251 FPDIREKSSSCKFRGCLHLKEPKCAVKQAVEDGELKQY 288 (307)
T ss_dssp SHHHHHHGGGCSSTTCCSSSCSSCHHHHHHHHTSSCHH
T ss_pred HHHHHHHhhhccccCCCCccCHHHHHHHHHHhCCChHH
Confidence 1 1 1123468888888888764
|
| >3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X* | Back alignment and structure |
|---|
Probab=98.17 E-value=5.9e-07 Score=92.64 Aligned_cols=86 Identities=20% Similarity=0.160 Sum_probs=57.3
Q ss_pred ccceEEeeCCeEEEEEcCCCCChHHHHHHHhCCCCCCCcEE---------EEc----------CeEEEEecCCcC-C---
Q 037346 377 RNINLKVFHGMRVAVCGTVGSGKSSCLSCILGGVPKESGII---------RLC----------GTKAYVAQSPWI-Q--- 433 (1156)
Q Consensus 377 ~~i~l~i~~g~~~~ivG~~GsGKSTll~~i~g~~~~~~G~i---------~~~----------g~~~~v~Q~~~~-~--- 433 (1156)
+++++++.+| +++|+||||||||||+.+|.+.+.+..|.. ..+ ..+.+++|+|.- +
T Consensus 18 ~~~~~~~~~g-~~~i~G~NGsGKStll~ai~~~l~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~v~~~f~~~~~~~~~~ 96 (182)
T 3kta_A 18 KKVVIPFSKG-FTAIVGANGSGKSNIGDAILFVLGGLSAKAMRASRISDLIFAGSKNEPPAKYAEVAIYFNNEDRGFPID 96 (182)
T ss_dssp SCEEEECCSS-EEEEEECTTSSHHHHHHHHHHHTTCCCTGGGTCSSGGGGBCCCC----CCSCEEEEEEEECTTCCSSSS
T ss_pred ccEEEecCCC-cEEEECCCCCCHHHHHHHHHHHHcCCcccccccccchheeecccccCCCCceEEEEEEEeCCCcccccC
Confidence 6889999999 999999999999999999998877655431 111 146778887631 1
Q ss_pred --CccHHHHhh---------cCCCCCHHHHHHHHHHhCCch
Q 037346 434 --SGKIEENIL---------FGKEMDRERYERVLEACSLKK 463 (1156)
Q Consensus 434 --~~ti~eni~---------~~~~~~~~~~~~~~~~~~l~~ 463 (1156)
.-+|...+. -|.+...+.+.+.++.+++..
T Consensus 97 ~~~~~i~r~~~~~~~~~~~i~g~~~~~~~~~~~l~~~~l~~ 137 (182)
T 3kta_A 97 EDEVVIRRRVYPDGRSSYWLNGRRATRSEILDILTAAMISP 137 (182)
T ss_dssp SSEEEEEEEECTTSCEEEEETTEEECHHHHHHHHHHTTCCT
T ss_pred CcEEEEEEEEEeCCcEEEEECCeEcCHHHHHHHHHHcCCCC
Confidence 113322221 122334667778888777754
|
| >2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A* | Back alignment and structure |
|---|
Probab=98.16 E-value=3.7e-08 Score=116.87 Aligned_cols=154 Identities=12% Similarity=0.062 Sum_probs=85.0
Q ss_pred cceEEeeCCeEEEEEcCCCCChHHHHHHHhC--CCCCCCcEEEE---cCeE-EE--EecCCcCCCccHHHHhhcC-----
Q 037346 378 NINLKVFHGMRVAVCGTVGSGKSSCLSCILG--GVPKESGIIRL---CGTK-AY--VAQSPWIQSGKIEENILFG----- 444 (1156)
Q Consensus 378 ~i~l~i~~g~~~~ivG~~GsGKSTll~~i~g--~~~~~~G~i~~---~g~~-~~--v~Q~~~~~~~ti~eni~~~----- 444 (1156)
.+++++.++..++|.|++||||||++++|.. .+.++.|++.+ |.+- .+ ...-|++. ++|.+|....
T Consensus 159 pv~ldL~~~pHlLIaG~TGSGKSt~L~~li~sLl~~~~p~~v~l~liDpK~~el~~~~~lPhl~-~~Vvtd~~~a~~~L~ 237 (512)
T 2ius_A 159 PVVADLAKMPHLLVAGTTGSGASVGVNAMILSMLYKAQPEDVRFIMIDPKMLELSVYEGIPHLL-TEVVTDMKDAANALR 237 (512)
T ss_dssp EEEEEGGGSCSEEEECCTTSSHHHHHHHHHHHHHTTCCTTTEEEEEECCSSSGGGGGTTCTTBS-SSCBCSHHHHHHHHH
T ss_pred EEEEEcccCceEEEECCCCCCHHHHHHHHHHHHHHhCCCceEEEEEECCchhhhhhhccCCccc-ceeecCHHHHHHHHH
Confidence 4678889999999999999999999999876 45555566554 2211 00 00112221 1121111100
Q ss_pred --CCCCHHHHHHHHHHhCCchhhhhCCCCCccccccCCCCCCHHHHHHH----------HHHHhhccCCC-eeeeeCCCC
Q 037346 445 --KEMDRERYERVLEACSLKKDLEVLPFGDQTIIGERGINLSGGQKQRI----------QIARPLYQDAD-IFLLDDPFS 511 (1156)
Q Consensus 445 --~~~~~~~~~~~~~~~~l~~~~~~~~~g~~t~v~~~g~~LSgGqkqRi----------~lAral~~~~~-illlDep~s 511 (1156)
....++|| +.++..++.+.-. ++..+ ...+||||+||. ++|+++...|. ++++||+.+
T Consensus 238 ~~~~EmerR~-~ll~~~Gv~~i~~-----yn~~~---~~~~s~G~~~~~~~~~pg~~~~~~a~~l~~lP~ivlvIDE~~~ 308 (512)
T 2ius_A 238 WCVNEMERRY-KLMSALGVRNLAG-----YNEKI---AEADRMMRPIPDPYWKPGDSMDAQHPVLKKEPYIVVLVDEFAD 308 (512)
T ss_dssp HHHHHHHHHH-HHHHHTTCSSHHH-----HHHHH---HHHHHTTCCCBCTTC---------CCBCCCCCEEEEEEETHHH
T ss_pred HHHHHHHHHH-HHHHHcCCccHHH-----HHHHH---HHHhhcCCcccccccccccchhccccccccCCcEEEEEeCHHH
Confidence 00012232 3344444322110 00000 124788887752 46778888898 899999999
Q ss_pred CcCHHHH--HHHHHHHHh---cCCCEEEEEccCCC
Q 037346 512 PVDDHTG--AHLFKFCWV---SSSKTVIYATHQVE 541 (1156)
Q Consensus 512 ~lD~~~~--~~i~~~~~~---~~~~tvi~vtH~~~ 541 (1156)
.+|.... ..++..+.+ ..|.++|++||+++
T Consensus 309 ll~~~~~~~~~~l~~Lar~gRa~GI~LIlaTQrp~ 343 (512)
T 2ius_A 309 LMMTVGKKVEELIARLAQKARAAGIHLVLATQRPS 343 (512)
T ss_dssp HHHHHHHHHHHHHHHHHHHCGGGTEEEEEEESCCC
T ss_pred HHhhhhHHHHHHHHHHHHHhhhCCcEEEEEecCCc
Confidence 8884321 122232322 23779999999987
|
| >1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome segregation, cell adhesion, kleisin, MIT cell cycle; HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=98.16 E-value=1.5e-06 Score=102.72 Aligned_cols=62 Identities=23% Similarity=0.299 Sum_probs=55.4
Q ss_pred ccccc----cCCCEEEEecCCcCCCHHHHHHHHHHHHHhcC-CceEEEeecCcccccccCEEEEEeC
Q 037346 1063 GRVLL----KKSKVLVLDEATASVDTATDNQIQQTLRQHFS-DCTVVTIAHRITSVLDSAMVLLLNH 1124 (1156)
Q Consensus 1063 ARALL----r~~~ILiLDEaTS~LD~~te~~I~~~l~~~~~-~~TvI~IaHrl~ti~~~D~I~Vl~~ 1124 (1156)
||+|+ ++|++|||||||++||+.+...+.+.|++..+ +.|+|+|||+...+..||+++++..
T Consensus 345 a~~la~~~~~~~~~lllDEp~~~LD~~~~~~l~~~l~~~~~~~~~~ii~th~~~~~~~~d~~~~~~~ 411 (430)
T 1w1w_A 345 ALLFAINSYQPSPFFVLDEVDAALDITNVQRIAAYIRRHRNPDLQFIVISLKNTMFEKSDALVGVYR 411 (430)
T ss_dssp HHHHHHHTSSCCSEEEESSTTTTCCHHHHHHHHHHHHHHCBTTBEEEEECSCHHHHTTCSEEEEEEE
T ss_pred HHHHHHhcCCCCCEEEeCCCcccCCHHHHHHHHHHHHHHhcCCCEEEEEECCHHHHHhCCEEEEEEE
Confidence 66666 68999999999999999999999999988753 6799999999988889999999963
|
| >1qhl_A Protein (cell division protein MUKB); SMC, chromosome partitioning; 2.20A {Escherichia coli} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=98.11 E-value=3.4e-07 Score=97.52 Aligned_cols=69 Identities=16% Similarity=0.162 Sum_probs=42.7
Q ss_pred EEEEEEEEEEcCC-----CCceeeCCCCCCHHHHHHHHhhcccCCCceEEEcCeeCCCCCh--------HHHhhcCeeec
Q 037346 948 VNIRHLQVRYAPN-----LPLVLRGRTGSGKSTLIQTLFRIVESTAGHILIDGKDISLIGL--------HDLRTRLSIIP 1014 (1156)
Q Consensus 948 I~~~~Vsf~Y~~~-----~~~vL~G~SGsGKSTL~~lL~rl~~p~~G~I~idG~di~~i~~--------~~LR~~i~~Vp 1014 (1156)
++++|+...|..+ +..+|.||||||||||+++|.+++.|++|.|.++|.++...+. ..+|..+++|+
T Consensus 10 l~l~~~~~~~~~~~~~~~~~~~i~GpnGsGKSTll~~i~g~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~i~~v~ 89 (227)
T 1qhl_A 10 LTLINWNGFFARTFDLDELVTTLSGGNGAGKSTTMAAFVTALIPDLTLLHFRNTTEAGATSGSRDKGLHGKLKAGVCYSM 89 (227)
T ss_dssp EEEEEETTEEEEEECHHHHHHHHHSCCSHHHHHHHHHHHHHHSCCTTTC------------------CGGGBCSSEEEEE
T ss_pred EEEEeeecccCCEEEEcCcEEEEECCCCCCHHHHHHHHhcccccCCCeEEECCEEcccCCccccccchhhHhhcCcEEEE
Confidence 5556654433211 2246779999999999999999999999999999999854332 23467789998
Q ss_pred cc
Q 037346 1015 QD 1016 (1156)
Q Consensus 1015 Qd 1016 (1156)
|+
T Consensus 90 ~~ 91 (227)
T 1qhl_A 90 LD 91 (227)
T ss_dssp EE
T ss_pred Ee
Confidence 85
|
| >2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A* | Back alignment and structure |
|---|
Probab=98.10 E-value=2.7e-06 Score=100.97 Aligned_cols=150 Identities=15% Similarity=0.210 Sum_probs=87.7
Q ss_pred EEEEEcCCCCceeeCCCCCCHHHHHHHHhh--cccCCCceEEEcCeeCCCCChHHHhhcCeeeccccccccccchhccCC
Q 037346 953 LQVRYAPNLPLVLRGRTGSGKSTLIQTLFR--IVESTAGHILIDGKDISLIGLHDLRTRLSIIPQDPTMFEGTTRSNLDP 1030 (1156)
Q Consensus 953 Vsf~Y~~~~~~vL~G~SGsGKSTL~~lL~r--l~~p~~G~I~idG~di~~i~~~~LR~~i~~VpQdp~LF~gTIr~Nl~~ 1030 (1156)
|.+....+....+.|.|||||||+++.|.. ++.++.|++.+.++|.+...+..+.. =|+++. ++.+|..-
T Consensus 160 v~ldL~~~pHlLIaG~TGSGKSt~L~~li~sLl~~~~p~~v~l~liDpK~~el~~~~~-------lPhl~~-~Vvtd~~~ 231 (512)
T 2ius_A 160 VVADLAKMPHLLVAGTTGSGASVGVNAMILSMLYKAQPEDVRFIMIDPKMLELSVYEG-------IPHLLT-EVVTDMKD 231 (512)
T ss_dssp EEEEGGGSCSEEEECCTTSSHHHHHHHHHHHHHTTCCTTTEEEEEECCSSSGGGGGTT-------CTTBSS-SCBCSHHH
T ss_pred EEEEcccCceEEEECCCCCCHHHHHHHHHHHHHHhCCCceEEEEEECCchhhhhhhcc-------CCcccc-eeecCHHH
Confidence 344444444556779999999999999876 67777899999899888765554432 122221 12222110
Q ss_pred CC---CCCHHHH---HHHHHHcCCChHHHh-------hcCC-------------ccccccccccCCC-EEEEecCCcCCC
Q 037346 1031 LE---EHADEQI---WEALDKCQLGDEVRK-------KKGK-------------LDSQGRVLLKKSK-VLVLDEATASVD 1083 (1156)
Q Consensus 1031 ~~---~~~deei---~~al~~~~l~~~i~~-------lp~g-------------l~s~ARALLr~~~-ILiLDEaTS~LD 1083 (1156)
.. ....+|+ .+.++.+|+.+.-.. +.+| .+..++++-..|. ++++||+++.+|
T Consensus 232 a~~~L~~~~~EmerR~~ll~~~Gv~~i~~yn~~~~~~~s~G~~~~~~~~~pg~~~~~~a~~l~~lP~ivlvIDE~~~ll~ 311 (512)
T 2ius_A 232 AANALRWCVNEMERRYKLMSALGVRNLAGYNEKIAEADRMMRPIPDPYWKPGDSMDAQHPVLKKEPYIVVLVDEFADLMM 311 (512)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHTTCCCBCTTC---------CCBCCCCCEEEEEEETHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCccHHHHHHHHHHHhhcCCcccccccccccchhccccccccCCcEEEEEeCHHHHHh
Confidence 00 0001122 355667776543221 1111 1123677778898 789999999988
Q ss_pred HHHHHHHHHHHHHh---c--CCceEEEeecCcc
Q 037346 1084 TATDNQIQQTLRQH---F--SDCTVVTIAHRIT 1111 (1156)
Q Consensus 1084 ~~te~~I~~~l~~~---~--~~~TvI~IaHrl~ 1111 (1156)
... ..+.+.|.++ - .|.++|++|||++
T Consensus 312 ~~~-~~~~~~l~~Lar~gRa~GI~LIlaTQrp~ 343 (512)
T 2ius_A 312 TVG-KKVEELIARLAQKARAAGIHLVLATQRPS 343 (512)
T ss_dssp HHH-HHHHHHHHHHHHHCGGGTEEEEEEESCCC
T ss_pred hhh-HHHHHHHHHHHHHhhhCCcEEEEEecCCc
Confidence 432 3344443322 2 2779999999987
|
| >1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A* | Back alignment and structure |
|---|
Probab=98.10 E-value=5.9e-08 Score=104.05 Aligned_cols=114 Identities=13% Similarity=0.150 Sum_probs=73.9
Q ss_pred CeEEEEEcCCCCChHHHHHHHhCCC---CCCCcEEEE--------cCe--------------EEEEecCC------cCCC
Q 037346 386 GMRVAVCGTVGSGKSSCLSCILGGV---PKESGIIRL--------CGT--------------KAYVAQSP------WIQS 434 (1156)
Q Consensus 386 g~~~~ivG~~GsGKSTll~~i~g~~---~~~~G~i~~--------~g~--------------~~~v~Q~~------~~~~ 434 (1156)
+.+++|+||+||||||+.+.|.+.+ .++.|.+.. +|. +++++|++ .+..
T Consensus 5 ~~~i~i~G~~GsGKSTl~~~L~~~~g~~~~d~g~i~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 84 (227)
T 1cke_A 5 APVITIDGPSGAGKGTLCKAMAEALQWHLLDSGAIYRVLALAALHHHVDVASEDALVPLASHLDVRFVSTNGNLEVILEG 84 (227)
T ss_dssp SCEEEEECCTTSSHHHHHHHHHHHHTCEEEEHHHHHHHHHHHHHHHTCCTTCHHHHHHHHHTCCEEEEEETTEEEEEETT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCCcccCcceeehhhHHHHHcCCCccCHHHHHHHHHhCceeeeccCCCceEEECC
Confidence 5689999999999999999998876 566777655 332 35566654 2234
Q ss_pred ccHHHHhhcCCCCCHHHHHHHHHHhCCchhhhhCCCCCcccc-ccCCCCCCHHHHHHHHHHHhhccCCCeeeeeCCC
Q 037346 435 GKIEENILFGKEMDRERYERVLEACSLKKDLEVLPFGDQTII-GERGINLSGGQKQRIQIARPLYQDADIFLLDDPF 510 (1156)
Q Consensus 435 ~ti~eni~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~t~v-~~~g~~LSgGqkqRi~lAral~~~~~illlDep~ 510 (1156)
.++.+++. .+....++..+...+.+.....+..+.+ ..+|.-++|+ .++++++.+++++++.++.
T Consensus 85 ~~v~~~~~------~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~vldg~-----~~~~~~~~~~d~~i~l~~~ 150 (227)
T 1cke_A 85 EDVSGEIR------TQEVANAASQVAAFPRVREALLRRQRAFRELPGLIADGR-----DMGTVVFPDAPVKIFLDAS 150 (227)
T ss_dssp EECHHHHT------SHHHHHHHHHHTTCHHHHHHHHHHHHTTCCTTCEEEEES-----SCCCCCCTTCSEEEEEECC
T ss_pred eeCchhhC------CHHHHHHHHHhcCCHHHHHHHHHHHHHHHhCCCEEEECC-----CccceEecCCCEEEEEeCC
Confidence 45556542 3455666666666655543322222222 2345667776 4667788889998888764
|
| >2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A* | Back alignment and structure |
|---|
Probab=98.09 E-value=1.2e-06 Score=91.57 Aligned_cols=128 Identities=20% Similarity=0.284 Sum_probs=70.7
Q ss_pred ceeeCCCCCCHHHHHHHHhhcc-----cC------CCceEEEcCeeCC----CC-ChHHHhhcCeeeccccc--c--ccc
Q 037346 963 LVLRGRTGSGKSTLIQTLFRIV-----ES------TAGHILIDGKDIS----LI-GLHDLRTRLSIIPQDPT--M--FEG 1022 (1156)
Q Consensus 963 ~vL~G~SGsGKSTL~~lL~rl~-----~p------~~G~I~idG~di~----~i-~~~~LR~~i~~VpQdp~--L--F~g 1022 (1156)
+++.|++|||||||++.|.|.. .| ..|+|.++|.++. +. +.+..|+......|++. + |+.
T Consensus 8 v~lvG~~g~GKSTLl~~l~~~~~~~~~~~t~~~~~~~~~i~~~g~~~~~~i~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~ 87 (199)
T 2f9l_A 8 VVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQERYRRITSAYYRGAVGALLVYDI 87 (199)
T ss_dssp EEEESSTTSSHHHHHHHHHHSCCCC---CCCSCEEEEEEEEETTEEEEEEEEECSSGGGTTCCCHHHHTTCSEEEEEEET
T ss_pred EEEECcCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCchhhhhhhHHHHhcCCEEEEEEEC
Confidence 5788999999999999999973 23 3689999997652 22 23344443333334331 1 222
Q ss_pred cchhccCCCCCCCHHHHHHHHHHc-CCChHH----Hh--hcC---CccccccccccCCCEEEEecCCcCCCHHHHHHHHH
Q 037346 1023 TTRSNLDPLEEHADEQIWEALDKC-QLGDEV----RK--KKG---KLDSQGRVLLKKSKVLVLDEATASVDTATDNQIQQ 1092 (1156)
Q Consensus 1023 TIr~Nl~~~~~~~deei~~al~~~-~l~~~i----~~--lp~---gl~s~ARALLr~~~ILiLDEaTS~LD~~te~~I~~ 1092 (1156)
+-..-. . .-......++.. .-..-+ .+ +++ .....||++.++|+++++| ||++|.+.-..+.+
T Consensus 88 ~~~~s~---~--~~~~~~~~~~~~~~~~~~i~~v~nK~Dl~~~~~~~~~~a~~l~~~~~~~~~d--~Sal~~~~i~~l~~ 160 (199)
T 2f9l_A 88 AKHLTY---E--NVERWLKELRDHADSNIVIMLVGNKSDLRHLRAVPTDEARAFAEKNNLSFIE--TSALDSTNVEEAFK 160 (199)
T ss_dssp TCHHHH---H--THHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCEEEE--CCTTTCTTHHHHHH
T ss_pred cCHHHH---H--HHHHHHHHHHHhcCCCCeEEEEEECcccccccCcCHHHHHHHHHHcCCeEEE--EeCCCCCCHHHHHH
Confidence 111000 0 001111112111 100000 00 000 0012389999999999999 99999998887777
Q ss_pred HHHHh
Q 037346 1093 TLRQH 1097 (1156)
Q Consensus 1093 ~l~~~ 1097 (1156)
.|.+.
T Consensus 161 ~l~~~ 165 (199)
T 2f9l_A 161 NILTE 165 (199)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 76543
|
| >2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E* | Back alignment and structure |
|---|
Probab=98.05 E-value=4.2e-06 Score=99.00 Aligned_cols=113 Identities=18% Similarity=0.242 Sum_probs=72.6
Q ss_pred CccccceEEeeCCeEEEEEcCCCCChHHHHHHHhCCCCCCCcEEEEcCeEEEEecCCcCCCccHHHHhhcCCCCCHHHHH
Q 037346 374 PTLRNINLKVFHGMRVAVCGTVGSGKSSCLSCILGGVPKESGIIRLCGTKAYVAQSPWIQSGKIEENILFGKEMDRERYE 453 (1156)
Q Consensus 374 ~~l~~i~l~i~~g~~~~ivG~~GsGKSTll~~i~g~~~~~~G~i~~~g~~~~v~Q~~~~~~~ti~eni~~~~~~~~~~~~ 453 (1156)
..++++++.+++| +.|+||+|+|||||+++|.++... ...++. ..+.+
T Consensus 39 ~~~~~~g~~~p~g--vLL~GppGtGKT~Laraia~~~~~---------~f~~is---------~~~~~------------ 86 (476)
T 2ce7_A 39 SKFNRIGARMPKG--ILLVGPPGTGKTLLARAVAGEANV---------PFFHIS---------GSDFV------------ 86 (476)
T ss_dssp HHHHTTTCCCCSE--EEEECCTTSSHHHHHHHHHHHHTC---------CEEEEE---------GGGTT------------
T ss_pred HHHhhcCCCCCCe--EEEECCCCCCHHHHHHHHHHHcCC---------CeeeCC---------HHHHH------------
Confidence 3577788888888 889999999999999999986421 111111 00000
Q ss_pred HHHHHhCCchhhhhCCCCCccccccCCCCCCHHHHHHHHHHHhhccCCCeeeeeCCC----------CCcCHHHHHHHHH
Q 037346 454 RVLEACSLKKDLEVLPFGDQTIIGERGINLSGGQKQRIQIARPLYQDADIFLLDDPF----------SPVDDHTGAHLFK 523 (1156)
Q Consensus 454 ~~~~~~~l~~~~~~~~~g~~t~v~~~g~~LSgGqkqRi~lAral~~~~~illlDep~----------s~lD~~~~~~i~~ 523 (1156)
.. .+| .|++++|-.+++|....|.|+++||+- ++.|....+.+.+
T Consensus 87 ------------~~-------~~g------~~~~~~r~lf~~A~~~~p~ILfIDEid~l~~~r~~~~~g~~~~~~~~l~~ 141 (476)
T 2ce7_A 87 ------------EL-------FVG------VGAARVRDLFAQAKAHAPCIVFIDEIDAVGRHRGAGLGGGHDEREQTLNQ 141 (476)
T ss_dssp ------------TC-------CTT------HHHHHHHHHHHHHHHTCSEEEEEETGGGTCCC---------CHHHHHHHH
T ss_pred ------------HH-------Hhc------ccHHHHHHHHHHHHhcCCCEEEEechhhhhhhcccccCcCcHHHHHHHHH
Confidence 00 011 278899999999999999999999993 3555554433322
Q ss_pred HHHh------cCCCEEEEEccCCCcc
Q 037346 524 FCWV------SSSKTVIYATHQVEFL 543 (1156)
Q Consensus 524 ~~~~------~~~~tvi~vtH~~~~~ 543 (1156)
.+.. ..+..+|.+||+++.+
T Consensus 142 LL~~ld~~~~~~~viVIaaTn~~~~L 167 (476)
T 2ce7_A 142 LLVEMDGFDSKEGIIVMAATNRPDIL 167 (476)
T ss_dssp HHHHHHHSCGGGTEEEEEEESCGGGS
T ss_pred HHHHHhccCCCCCEEEEEecCChhhh
Confidence 2211 2356788899998654
|
| >1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=98.04 E-value=5.3e-06 Score=87.32 Aligned_cols=125 Identities=14% Similarity=0.174 Sum_probs=72.8
Q ss_pred EEEEEcCCCCChHHHHHHHhCCCCCCCcEEEEcCeEEEEecCCcCCCccHHHHhhcCCCCCHHHHHHHHHHhCCchhhhh
Q 037346 388 RVAVCGTVGSGKSSCLSCILGGVPKESGIIRLCGTKAYVAQSPWIQSGKIEENILFGKEMDRERYERVLEACSLKKDLEV 467 (1156)
Q Consensus 388 ~~~ivG~~GsGKSTll~~i~g~~~~~~G~i~~~g~~~~v~Q~~~~~~~ti~eni~~~~~~~~~~~~~~~~~~~l~~~~~~ 467 (1156)
+++|+|++||||||+.+.|.++ |...+++ +.+...+.. + ....+.++.+..+..
T Consensus 4 ~i~l~G~~GsGKST~~~~La~l-----g~~~id~-------------d~~~~~~~~--~-~~~~~~~i~~~~g~~----- 57 (206)
T 1jjv_A 4 IVGLTGGIGSGKTTIANLFTDL-----GVPLVDA-------------DVVAREVVA--K-DSPLLSKIVEHFGAQ----- 57 (206)
T ss_dssp EEEEECSTTSCHHHHHHHHHTT-----TCCEEEH-------------HHHHHHTTC--S-SCHHHHHHHHHHCTT-----
T ss_pred EEEEECCCCCCHHHHHHHHHHC-----CCcccch-------------HHHHHHHcc--C-ChHHHHHHHHHhCHH-----
Confidence 6899999999999999999982 4333332 111111110 1 012233333333211
Q ss_pred CCCCCccccccCCCCCCHHHHHHHHHHHhhccCCCeeeeeCCCCCcCHHHHHHHHHHHHhcCCCEEEEEccCCCc---cc
Q 037346 468 LPFGDQTIIGERGINLSGGQKQRIQIARPLYQDADIFLLDDPFSPVDDHTGAHLFKFCWVSSSKTVIYATHQVEF---LP 544 (1156)
Q Consensus 468 ~~~g~~t~v~~~g~~LSgGqkqRi~lAral~~~~~illlDep~s~lD~~~~~~i~~~~~~~~~~tvi~vtH~~~~---~~ 544 (1156)
.-.++|+.+|..+++.++.+|+....+ .+.++|...+.+.+.+....+.++|+.+|.+.. .+
T Consensus 58 -------------~~~~~g~~~r~~l~~~~f~~~~~~~~l--~~~~~p~v~~~~~~~~~~~~~~~vv~~~~~l~e~~~~~ 122 (206)
T 1jjv_A 58 -------------ILTEQGELNRAALRERVFNHDEDKLWL--NNLLHPAIRERMKQKLAEQTAPYTLFVVPLLIENKLTA 122 (206)
T ss_dssp -------------CC------CHHHHHHHHHTCHHHHHHH--HHHHHHHHHHHHHHHHHTCCSSEEEEECTTTTTTTCGG
T ss_pred -------------HhccCccccHHHHHHHHhCCHHHHHHH--HhccCHHHHHHHHHHHHhcCCCEEEEEechhhhcCcHh
Confidence 124688999999999999888755443 335567666665544433346688888887754 34
Q ss_pred cCCEEEEEe
Q 037346 545 AADLILVIK 553 (1156)
Q Consensus 545 ~~d~i~~l~ 553 (1156)
.||.+++++
T Consensus 123 ~~d~vi~l~ 131 (206)
T 1jjv_A 123 LCDRILVVD 131 (206)
T ss_dssp GCSEEEEEE
T ss_pred hCCEEEEEE
Confidence 699999986
|
| >1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1 | Back alignment and structure |
|---|
Probab=98.04 E-value=2.3e-06 Score=99.53 Aligned_cols=142 Identities=14% Similarity=0.170 Sum_probs=82.2
Q ss_pred EEEEEEEEEcCCCCceeeCCCCCCHHHHHHHHhhcccCCCceEEEcCeeCCCCChHHHhhcCeeeccccccccccchhcc
Q 037346 949 NIRHLQVRYAPNLPLVLRGRTGSGKSTLIQTLFRIVESTAGHILIDGKDISLIGLHDLRTRLSIIPQDPTMFEGTTRSNL 1028 (1156)
Q Consensus 949 ~~~~Vsf~Y~~~~~~vL~G~SGsGKSTL~~lL~rl~~p~~G~I~idG~di~~i~~~~LR~~i~~VpQdp~LF~gTIr~Nl 1028 (1156)
+-+++++.......++|.|++|||||||+++|.+... .+.+.+..++ ...+++|+|+.. ..-++.|+.
T Consensus 146 ~~~~i~lelk~g~~VgLVG~~gAGKSTLL~~Lsg~~~------~i~~~~ftTl-----~p~~G~V~~~~~-~~~~l~Dtp 213 (416)
T 1udx_A 146 EKRRLRLELMLIADVGLVGYPNAGKSSLLAAMTRAHP------KIAPYPFTTL-----SPNLGVVEVSEE-ERFTLADIP 213 (416)
T ss_dssp CEEEEEEEECCSCSEEEECCGGGCHHHHHHHHCSSCC------EECCCTTCSS-----CCEEEEEECSSS-CEEEEEECC
T ss_pred eEeeeeeEEcCCCEEEEECCCCCcHHHHHHHHHcCCc------cccCccccee-----cceeeEEEecCc-ceEEEEecc
Confidence 4589999999988899999999999999999999843 3555554443 345777877640 111233332
Q ss_pred CCCC------CCCHHHHHHHHHHc-------CC-ChHHHhhcCCc---cccccccccCCCEEEEecCCcCCCHHHHHHHH
Q 037346 1029 DPLE------EHADEQIWEALDKC-------QL-GDEVRKKKGKL---DSQGRVLLKKSKVLVLDEATASVDTATDNQIQ 1091 (1156)
Q Consensus 1029 ~~~~------~~~deei~~al~~~-------~l-~~~i~~lp~gl---~s~ARALLr~~~ILiLDEaTS~LD~~te~~I~ 1091 (1156)
-... ..... ..+.++.+ ++ .+.+..+..+. ...||+|..+|.||++ +.+|..+...+.
T Consensus 214 Gli~~a~~~~~L~~~-fl~~~era~~lL~vvDls~~~~~~ls~g~~el~~la~aL~~~P~ILVl----NKlDl~~~~~~~ 288 (416)
T 1udx_A 214 GIIEGASEGKGLGLE-FLRHIARTRVLLYVLDAADEPLKTLETLRKEVGAYDPALLRRPSLVAL----NKVDLLEEEAVK 288 (416)
T ss_dssp CCCCCGGGSCCSCHH-HHHHHTSSSEEEEEEETTSCHHHHHHHHHHHHHHHCHHHHHSCEEEEE----ECCTTSCHHHHH
T ss_pred ccccchhhhhhhhHH-HHHHHHHHHhhhEEeCCccCCHHHHHHHHHHHHHHhHHhhcCCEEEEE----ECCChhhHHHHH
Confidence 1110 11111 11222222 11 12222221111 1227889999999999 899987663333
Q ss_pred HHHHHh-cCCceEEEee
Q 037346 1092 QTLRQH-FSDCTVVTIA 1107 (1156)
Q Consensus 1092 ~~l~~~-~~~~TvI~Ia 1107 (1156)
+..+.. ..+.+++.|+
T Consensus 289 ~l~~~l~~~g~~vi~iS 305 (416)
T 1udx_A 289 ALADALAREGLAVLPVS 305 (416)
T ss_dssp HHHHHHHTTTSCEEECC
T ss_pred HHHHHHHhcCCeEEEEE
Confidence 332222 1356877776
|
| >3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=98.03 E-value=5.3e-07 Score=97.74 Aligned_cols=52 Identities=19% Similarity=0.234 Sum_probs=35.9
Q ss_pred cEEEeee-EEEeCCCCCCCccccceEEeeC---CeEEEEEcCCCCChHHHHHHHhCCC
Q 037346 357 AIEIIDG-SFSWDFSSPNPTLRNINLKVFH---GMRVAVCGTVGSGKSSCLSCILGGV 410 (1156)
Q Consensus 357 ~i~~~~~-~f~~~~~~~~~~l~~i~l~i~~---g~~~~ivG~~GsGKSTll~~i~g~~ 410 (1156)
.++++|+ +|+|. .+.++|+|+||+|++ |+.++|+|++||||||+.+.|++.+
T Consensus 17 ~l~~~~~~~~~~~--~~~~~l~~~~~~i~~~l~g~~i~l~G~~GsGKSTl~~~La~~l 72 (250)
T 3nwj_A 17 LLETGSLLHSPFD--EEQQILKKKAEEVKPYLNGRSMYLVGMMGSGKTTVGKIMARSL 72 (250)
T ss_dssp -----------------CHHHHHHHHTTHHHHTTCCEEEECSTTSCHHHHHHHHHHHH
T ss_pred ceEEcceeeEEec--CcchhhhhhhhhhhhhcCCCEEEEECCCCCCHHHHHHHHHHhc
Confidence 5899999 99993 245799999999999 9999999999999999999998855
|
| >1qhl_A Protein (cell division protein MUKB); SMC, chromosome partitioning; 2.20A {Escherichia coli} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=98.00 E-value=1.3e-07 Score=100.70 Aligned_cols=55 Identities=13% Similarity=0.279 Sum_probs=41.9
Q ss_pred cEEEeeeEEEeCCCCCCCccccceEEeeCCeEEEEEcCCCCChHHHHHHHhCCCCCCCcEEEEcCe
Q 037346 357 AIEIIDGSFSWDFSSPNPTLRNINLKVFHGMRVAVCGTVGSGKSSCLSCILGGVPKESGIIRLCGT 422 (1156)
Q Consensus 357 ~i~~~~~~f~~~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKSTll~~i~g~~~~~~G~i~~~g~ 422 (1156)
.++++|++..+. . ++++.+ ++++|+||||||||||+++|+|.+.|++|.|.++|.
T Consensus 9 ~l~l~~~~~~~~---~-------~~~~~~-~~~~i~GpnGsGKSTll~~i~g~~~~~~G~i~~~g~ 63 (227)
T 1qhl_A 9 SLTLINWNGFFA---R-------TFDLDE-LVTTLSGGNGAGKSTTMAAFVTALIPDLTLLHFRNT 63 (227)
T ss_dssp EEEEEEETTEEE---E-------EECHHH-HHHHHHSCCSHHHHHHHHHHHHHHSCCTTTC-----
T ss_pred EEEEEeeecccC---C-------EEEEcC-cEEEEECCCCCCHHHHHHHHhcccccCCCeEEECCE
Confidence 477888765542 1 566666 899999999999999999999999999999988874
|
| >2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B* | Back alignment and structure |
|---|
Probab=97.97 E-value=2.3e-06 Score=108.03 Aligned_cols=144 Identities=18% Similarity=0.108 Sum_probs=85.5
Q ss_pred EeeCCeEEEEEcCCCCChHHHHHHHhCCCCCCCcEEEEcCe-EEEEecCCcCCCccHHHHhhcCCCCCHHHHHHHHHHhC
Q 037346 382 KVFHGMRVAVCGTVGSGKSSCLSCILGGVPKESGIIRLCGT-KAYVAQSPWIQSGKIEENILFGKEMDRERYERVLEACS 460 (1156)
Q Consensus 382 ~i~~g~~~~ivG~~GsGKSTll~~i~g~~~~~~G~i~~~g~-~~~v~Q~~~~~~~ti~eni~~~~~~~~~~~~~~~~~~~ 460 (1156)
.+..|+.++|+||+||||||++..+++...+..| +|. +.++ | |. .... ...++++.+..+
T Consensus 105 ~l~~~~~vii~gpTGSGKTtllp~ll~~~~~~~~----~g~~ilvl-~-P~---r~La----------~q~~~~l~~~~~ 165 (773)
T 2xau_A 105 LYQNNQIMVFVGETGSGKTTQIPQFVLFDEMPHL----ENTQVACT-Q-PR---RVAA----------MSVAQRVAEEMD 165 (773)
T ss_dssp HHHHCSEEEEECCTTSSHHHHHHHHHHHHHCGGG----GTCEEEEE-E-SC---HHHH----------HHHHHHHHHHTT
T ss_pred HHhCCCeEEEECCCCCCHHHHHHHHHHHhccccC----CCceEEec-C-ch---HHHH----------HHHHHHHHHHhC
Confidence 3567899999999999999999888776554443 122 2222 1 11 0000 011122222222
Q ss_pred Cchh--hh-hCCCCCccccccCCCCCCHHHHHHHHHHHhhccCCCeeeeeCCCC-CcCHHHHHHHHHHHHh-c-CCCEEE
Q 037346 461 LKKD--LE-VLPFGDQTIIGERGINLSGGQKQRIQIARPLYQDADIFLLDDPFS-PVDDHTGAHLFKFCWV-S-SSKTVI 534 (1156)
Q Consensus 461 l~~~--~~-~~~~g~~t~v~~~g~~LSgGqkqRi~lAral~~~~~illlDep~s-~lD~~~~~~i~~~~~~-~-~~~tvi 534 (1156)
.... .. .......+.-+....-+|+|+.+|..++++++.+++++|+|||.. +||......+++.+.. . ..++++
T Consensus 166 ~~v~~~vG~~i~~~~~~~~~~~I~v~T~G~l~r~l~~~~~l~~~~~lIlDEah~R~ld~d~~~~~l~~l~~~~~~~~iIl 245 (773)
T 2xau_A 166 VKLGEEVGYSIRFENKTSNKTILKYMTDGMLLREAMEDHDLSRYSCIILDEAHERTLATDILMGLLKQVVKRRPDLKIII 245 (773)
T ss_dssp CCBTTTEEEEETTEEECCTTCSEEEEEHHHHHHHHHHSTTCTTEEEEEECSGGGCCHHHHHHHHHHHHHHHHCTTCEEEE
T ss_pred CchhheecceeccccccCCCCCEEEECHHHHHHHHhhCccccCCCEEEecCccccccchHHHHHHHHHHHHhCCCceEEE
Confidence 1110 00 000000011122345689999999999999999999999999997 8998766555555443 2 346777
Q ss_pred E-EccCCCccc
Q 037346 535 Y-ATHQVEFLP 544 (1156)
Q Consensus 535 ~-vtH~~~~~~ 544 (1156)
+ +||+.+.+.
T Consensus 246 ~SAT~~~~~l~ 256 (773)
T 2xau_A 246 MSATLDAEKFQ 256 (773)
T ss_dssp EESCSCCHHHH
T ss_pred EeccccHHHHH
Confidence 7 489876543
|
| >1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10 | Back alignment and structure |
|---|
Probab=97.96 E-value=7.6e-06 Score=91.35 Aligned_cols=39 Identities=18% Similarity=0.314 Sum_probs=34.7
Q ss_pred CceeeCCCCCCHHHHHHHHhhcccCCCceEEEcCeeCCC
Q 037346 962 PLVLRGRTGSGKSTLIQTLFRIVESTAGHILIDGKDISL 1000 (1156)
Q Consensus 962 ~~vL~G~SGsGKSTL~~lL~rl~~p~~G~I~idG~di~~ 1000 (1156)
.+++.|++||||||++..|++.+.+.+|+|.+.+.|+..
T Consensus 106 vi~ivG~~GsGKTTl~~~LA~~l~~~g~kV~lv~~D~~r 144 (306)
T 1vma_A 106 VIMVVGVNGTGKTTSCGKLAKMFVDEGKSVVLAAADTFR 144 (306)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEECTTC
T ss_pred EEEEEcCCCChHHHHHHHHHHHHHhcCCEEEEEcccccc
Confidence 357889999999999999999999999999998888654
|
| >4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis} | Back alignment and structure |
|---|
Probab=97.95 E-value=4.9e-07 Score=98.63 Aligned_cols=59 Identities=17% Similarity=0.110 Sum_probs=47.8
Q ss_pred eCCeEEEEEcCCCCChHHHHHHHh---CCCCCCCcEEE--------EcC--------------eEEEEecC------CcC
Q 037346 384 FHGMRVAVCGTVGSGKSSCLSCIL---GGVPKESGIIR--------LCG--------------TKAYVAQS------PWI 432 (1156)
Q Consensus 384 ~~g~~~~ivG~~GsGKSTll~~i~---g~~~~~~G~i~--------~~g--------------~~~~v~Q~------~~~ 432 (1156)
++|++++|+||+||||||++++|+ |+..++.|.+. .+| .+++++|. .++
T Consensus 25 ~~g~~I~I~G~~GsGKSTl~k~La~~Lg~~~~d~g~i~r~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 104 (252)
T 4e22_A 25 AIAPVITVDGPSGAGKGTLCKALAESLNWRLLDSGAIYRVLALAALHHQVDISTEEALVPLAAHLDVRFVSQNGQLQVIL 104 (252)
T ss_dssp TTSCEEEEECCTTSSHHHHHHHHHHHTTCEEEEHHHHHHHHHHHHHHTTCCSSSSTTHHHHHHTCCEEEEEETTEEEEEE
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHhcCCCcCCCCceehHhHHHHHHcCCCcccHHHHHHHHHcCCEEEecCCCCceEEE
Confidence 789999999999999999999999 99999999987 444 24677754 345
Q ss_pred CCccHHHHhh
Q 037346 433 QSGKIEENIL 442 (1156)
Q Consensus 433 ~~~ti~eni~ 442 (1156)
+..++.+||.
T Consensus 105 ~~~~v~~~i~ 114 (252)
T 4e22_A 105 EGEDVSNEIR 114 (252)
T ss_dssp TTEECTTGGG
T ss_pred CCeehhHHHH
Confidence 5667777764
|
| >2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A | Back alignment and structure |
|---|
Probab=97.93 E-value=2.9e-06 Score=100.84 Aligned_cols=165 Identities=14% Similarity=0.207 Sum_probs=99.0
Q ss_pred EEEEEEEEEcCCCCceeeCCCCCCHHHHHHHHhhcccCCCc-eEEEcCeeCCCCChHHHhhcC-----eeeccccccccc
Q 037346 949 NIRHLQVRYAPNLPLVLRGRTGSGKSTLIQTLFRIVESTAG-HILIDGKDISLIGLHDLRTRL-----SIIPQDPTMFEG 1022 (1156)
Q Consensus 949 ~~~~Vsf~Y~~~~~~vL~G~SGsGKSTL~~lL~rl~~p~~G-~I~idG~di~~i~~~~LR~~i-----~~VpQdp~LF~g 1022 (1156)
.++++....+++.-++|.||+|+|||||+..+++..-+..| .+.+-+.+ .+.+++++++ ++-+|+ +..|
T Consensus 192 ~LD~~~gGl~~G~liiI~G~pG~GKTtl~l~ia~~~~~~~g~~Vl~~s~E---~s~~~l~~r~~~~~~~~~~~~--l~~g 266 (454)
T 2r6a_A 192 ELDRMTSGFQRSDLIIVAARPSVGKTAFALNIAQNVATKTNENVAIFSLE---MSAQQLVMRMLCAEGNINAQN--LRTG 266 (454)
T ss_dssp HHHHHHSSBCTTCEEEEECCTTSCHHHHHHHHHHHHHHHSSCCEEEEESS---SCHHHHHHHHHHHHHTCCHHH--HHTS
T ss_pred HHHhhcCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHhCCCcEEEEECC---CCHHHHHHHHHHHHcCCCHHH--HhcC
Confidence 45666555677777788899999999999999998876555 67665543 4556666553 222222 1222
Q ss_pred cchhccCCCCCCCHHH---HHHHHHHcCCChHHHhhcCCcc-----ccccccc--cCCCEEEEecCCcCCCHH-------
Q 037346 1023 TTRSNLDPLEEHADEQ---IWEALDKCQLGDEVRKKKGKLD-----SQGRVLL--KKSKVLVLDEATASVDTA------- 1085 (1156)
Q Consensus 1023 TIr~Nl~~~~~~~dee---i~~al~~~~l~~~i~~lp~gl~-----s~ARALL--r~~~ILiLDEaTS~LD~~------- 1085 (1156)
..++++ +.++++..+........+.++. ..+|++. .+|+++|+|+++.-.+..
T Consensus 267 ----------~l~~~~~~~~~~a~~~l~~~~l~i~d~~~~s~~~i~~~~~~l~~~~~~~livID~l~~~~~~~~~~~~~~ 336 (454)
T 2r6a_A 267 ----------KLTPEDWGKLTMAMGSLSNAGIYIDDTPSIRVSDIRAKCRRLKQESGLGMIVIDYLQLIQGSGRSKENRQ 336 (454)
T ss_dssp ----------CCCHHHHHHHHHHHHHHHSSCEEEECCTTCCHHHHHHHHHHHHTTTCCCEEEEECGGGSCCSCC----CH
T ss_pred ----------CCCHHHHHHHHHHHHHHhcCCEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEEccHHHhccCCCCCCCHH
Confidence 223333 4445544432221111122222 2256666 479999999999877431
Q ss_pred -HHHHHHHHHHHhc--CCceEEEeec---------C--cc--------cc-cccCEEEEEeCcEEe
Q 037346 1086 -TDNQIQQTLRQHF--SDCTVVTIAH---------R--IT--------SV-LDSAMVLLLNHGLIK 1128 (1156)
Q Consensus 1086 -te~~I~~~l~~~~--~~~TvI~IaH---------r--l~--------ti-~~~D~I~Vl~~G~Iv 1128 (1156)
.-..+.+.|+.+. .++|||+++| . +. .+ .+||.|++|..++.-
T Consensus 337 ~~i~~i~~~Lk~lAke~~i~vi~~sql~r~~e~~~~~~p~lsdlr~Sg~ie~~aD~vi~l~r~~~~ 402 (454)
T 2r6a_A 337 QEVSEISRSLKALARELEVPVIALSQLSRSVEQRQDKRPMMSDIRESGSIEQDADIVAFLYRDDYY 402 (454)
T ss_dssp HHHHHHHHHHHHHHHHHTCCEEEEECCCTTSTTC---CCCTHHHHTTCSHHHHCSEEEEEEETTC-
T ss_pred HHHHHHHHHHHHHHHHhCCeEEEEecCCcccccCCCCCCcHHHhhccchhHhhCCEEEEEeccccc
Confidence 1134555555443 3899999999 1 32 23 359999999877654
|
| >3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=97.91 E-value=6.8e-07 Score=100.24 Aligned_cols=126 Identities=16% Similarity=0.129 Sum_probs=75.4
Q ss_pred CccccceEEeeCCe------EEEEEcCCCCChHHHHHHHhCCCCCCCcEEEEcCeEEEEecCCcCCCccHHHHh----hc
Q 037346 374 PTLRNINLKVFHGM------RVAVCGTVGSGKSSCLSCILGGVPKESGIIRLCGTKAYVAQSPWIQSGKIEENI----LF 443 (1156)
Q Consensus 374 ~~l~~i~l~i~~g~------~~~ivG~~GsGKSTll~~i~g~~~~~~G~i~~~g~~~~v~Q~~~~~~~ti~eni----~~ 443 (1156)
..|++++..+.+++ +++|+||||||||||+++|.+.+.+..+ .|.+++++++.+.......+.. .+
T Consensus 74 ~~l~~~~~~~l~~~~~~~p~iigI~GpsGSGKSTl~~~L~~ll~~~~~----~~~v~~i~~D~f~~~~~~l~~~~~~~~~ 149 (321)
T 3tqc_A 74 QTLQQATYQFLGKPEPKVPYIIGIAGSVAVGKSTTSRVLKALLSRWPD----HPNVEVITTDGFLYSNAKLEKQGLMKRK 149 (321)
T ss_dssp HHHHHHHHHHHTCCCCCCCEEEEEECCTTSSHHHHHHHHHHHHTTSTT----CCCEEEEEGGGGBCCHHHHHHTTCGGGT
T ss_pred HHHHHHHHHHhccCCCCCCEEEEEECCCCCCHHHHHHHHHHHhcccCC----CCeEEEEeecccccchhhhhhHHHHhhc
Confidence 45666666666665 9999999999999999999999874211 2456778888766544333321 12
Q ss_pred CC--CCCHHHHHHHHHHhCCchhhhhCCCCCccccccCCCCCCHHHHHHHHHHHhhccCCCeeeeeCCCCCcCH
Q 037346 444 GK--EMDRERYERVLEACSLKKDLEVLPFGDQTIIGERGINLSGGQKQRIQIARPLYQDADIFLLDDPFSPVDD 515 (1156)
Q Consensus 444 ~~--~~~~~~~~~~~~~~~l~~~~~~~~~g~~t~v~~~g~~LSgGqkqRi~lAral~~~~~illlDep~s~lD~ 515 (1156)
|. .++.+...+.++...- |..+. . .-..|-+..+|+.-+......|+|+|++-+..-.|.
T Consensus 150 g~P~~~D~~~l~~~L~~L~~---------g~~~v-~--~P~yd~~~~~r~~~~~~~v~~~dIVIvEGi~lL~~~ 211 (321)
T 3tqc_A 150 GFPESYDMPSLLRVLNAIKS---------GQRNV-R--IPVYSHHYYDIVRGQYEIVDQPDIVILEGLNILQTG 211 (321)
T ss_dssp TSGGGBCHHHHHHHHHHHHT---------TCSSE-E--EEEEETTTTEEEEEEEEEECSCSEEEEECTTTTCCC
T ss_pred cCcccccHHHHHHHHHhhhc---------ccccc-c--cchhhhhccccccCceeeccCCCEEEEEcccccccc
Confidence 32 3566666666554321 11000 0 001222223333323455678999999999875544
|
| >3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=97.90 E-value=3.9e-06 Score=87.92 Aligned_cols=45 Identities=16% Similarity=0.187 Sum_probs=24.8
Q ss_pred EeCCCCCCCccccceEEeeCCeEEEEEcCCCCChHHHHHHHhCCC
Q 037346 366 SWDFSSPNPTLRNINLKVFHGMRVAVCGTVGSGKSSCLSCILGGV 410 (1156)
Q Consensus 366 ~~~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKSTll~~i~g~~ 410 (1156)
+|+.++..++++|+||++++|++++|+|++||||||+.+.|++.+
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~i~l~G~~GsGKsTl~~~La~~l 49 (199)
T 3vaa_A 5 HHHSSGVDLGTENLYFQSNAMVRIFLTGYMGAGKTTLGKAFARKL 49 (199)
T ss_dssp -------------------CCCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred cCCCCCCCCCCCceeEecCCCCEEEEEcCCCCCHHHHHHHHHHHc
Confidence 355556678999999999999999999999999999999999765
|
| >3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A* | Back alignment and structure |
|---|
Probab=97.90 E-value=2e-05 Score=90.71 Aligned_cols=45 Identities=36% Similarity=0.460 Sum_probs=34.5
Q ss_pred CCccccceEEeeCCeEEEEEcCCCCChHHHHHHHhC--CCCCCCcEEEEc
Q 037346 373 NPTLRNINLKVFHGMRVAVCGTVGSGKSSCLSCILG--GVPKESGIIRLC 420 (1156)
Q Consensus 373 ~~~l~~i~l~i~~g~~~~ivG~~GsGKSTll~~i~g--~~~~~~G~i~~~ 420 (1156)
..+|++++++++ .++|+|++|||||||++.|.| ++++..|.+...
T Consensus 24 ~~~l~~i~~~lp---~I~vvG~~~sGKSSLln~l~g~~~lp~~~~~vT~~ 70 (360)
T 3t34_A 24 SSALPTLWDSLP---AIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRR 70 (360)
T ss_dssp SCCC----CCCC---EEEEECBTTSSHHHHHHHHHTSCCSCCCSSSCCCS
T ss_pred ccccccccccCC---EEEEECCCCCcHHHHHHHHhCCCcCCCCCCcccCc
Confidence 358999999998 999999999999999999999 667777765433
|
| >2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A* | Back alignment and structure |
|---|
Probab=97.88 E-value=1.3e-05 Score=83.72 Aligned_cols=34 Identities=18% Similarity=0.248 Sum_probs=29.5
Q ss_pred HHHHHhhccCCCeeeeeCCCCCcCHHHHHHHHHHHH
Q 037346 491 IQIARPLYQDADIFLLDDPFSPVDDHTGAHLFKFCW 526 (1156)
Q Consensus 491 i~lAral~~~~~illlDep~s~lD~~~~~~i~~~~~ 526 (1156)
...||++..+|++.++| +||+|......+++.+.
T Consensus 130 ~~~a~~l~~~~~~~~~d--~Sal~~~~i~~l~~~l~ 163 (199)
T 2f9l_A 130 TDEARAFAEKNNLSFIE--TSALDSTNVEEAFKNIL 163 (199)
T ss_dssp HHHHHHHHHHTTCEEEE--CCTTTCTTHHHHHHHHH
T ss_pred HHHHHHHHHHcCCeEEE--EeCCCCCCHHHHHHHHH
Confidence 45689999999999999 99999999888887654
|
| >2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A | Back alignment and structure |
|---|
Probab=97.88 E-value=6.1e-06 Score=94.66 Aligned_cols=128 Identities=13% Similarity=0.159 Sum_probs=75.2
Q ss_pred EEEEEcCCCCChHHHHHHHhCCCC-----------CCCcEEEEcCeE-------EEEecCCcC----CCccHH-----HH
Q 037346 388 RVAVCGTVGSGKSSCLSCILGGVP-----------KESGIIRLCGTK-------AYVAQSPWI----QSGKIE-----EN 440 (1156)
Q Consensus 388 ~~~ivG~~GsGKSTll~~i~g~~~-----------~~~G~i~~~g~~-------~~v~Q~~~~----~~~ti~-----en 440 (1156)
.++|+|++|||||||++.|.|... +..|.+.++|.. |++.|.|.- |..|.. |.
T Consensus 181 ~V~lvG~~naGKSTLln~L~~~~~~~~~~~~~T~d~~~~~i~~~g~~v~l~DT~G~i~~lp~~lve~f~~tl~~~~~aD~ 260 (364)
T 2qtf_A 181 SIGIVGYTNSGKTSLFNSLTGLTQKVDTKLFTTMSPKRYAIPINNRKIMLVDTVGFIRGIPPQIVDAFFVTLSEAKYSDA 260 (364)
T ss_dssp EEEEECBTTSSHHHHHHHHHCC-----------CCSCEEEEEETTEEEEEEECCCBCSSCCGGGHHHHHHHHHGGGGSSE
T ss_pred EEEEECCCCCCHHHHHHHHHCCCccccCCcccccCCEEEEEEECCEEEEEEeCCCchhcCCHHHHHHHHHHHHHHHhCCE
Confidence 489999999999999999999875 567889998853 333332211 111111 12
Q ss_pred hhcCCCC---C---HHH---HHHHHHHhCCchhhhhCCCCCccccccCCCCCCHHHHHHHHHH----Hhh-ccCCCeeee
Q 037346 441 ILFGKEM---D---RER---YERVLEACSLKKDLEVLPFGDQTIIGERGINLSGGQKQRIQIA----RPL-YQDADIFLL 506 (1156)
Q Consensus 441 i~~~~~~---~---~~~---~~~~~~~~~l~~~~~~~~~g~~t~v~~~g~~LSgGqkqRi~lA----ral-~~~~~illl 506 (1156)
+++--+. . .+. ..++++..++. ..---.|+.+...+|+|++||+.++ +++ ..++++
T Consensus 261 il~VvD~s~~~~~~~~~~~~~~~~L~~l~~~-------~~p~ilV~NK~Dl~~~~~~~~~~~~~~l~~~l~~~~~~~--- 330 (364)
T 2qtf_A 261 LILVIDSTFSENLLIETLQSSFEILREIGVS-------GKPILVTLNKIDKINGDLYKKLDLVEKLSKELYSPIFDV--- 330 (364)
T ss_dssp EEEEEETTSCHHHHHHHHHHHHHHHHHHTCC-------SCCEEEEEECGGGCCSCHHHHHHHHHHHHHHHCSCEEEE---
T ss_pred EEEEEECCCCcchHHHHHHHHHHHHHHhCcC-------CCCEEEEEECCCCCCchHHHHHHHHHHHHHHhcCCCCcE---
Confidence 2221111 1 111 12333333221 1112234566667888899988877 666 444454
Q ss_pred eCCCCCcCHHHHHHHHHHHH
Q 037346 507 DDPFSPVDDHTGAHLFKFCW 526 (1156)
Q Consensus 507 Dep~s~lD~~~~~~i~~~~~ 526 (1156)
+|+|++|......+++.+.
T Consensus 331 -~~~SA~~g~gi~~L~~~I~ 349 (364)
T 2qtf_A 331 -IPISALKRTNLELLRDKIY 349 (364)
T ss_dssp -EECBTTTTBSHHHHHHHHH
T ss_pred -EEEECCCCcCHHHHHHHHH
Confidence 7999999988888877653
|
| >4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori} | Back alignment and structure |
|---|
Probab=97.84 E-value=1.4e-05 Score=90.11 Aligned_cols=128 Identities=14% Similarity=0.129 Sum_probs=80.9
Q ss_pred CccccceEEeeCCeEEEEEcCCCCChHHHHHHHhCCCCCCCcEEEEcCeEEEEecCCcCCCccHHHHhhcCCCCCHHH-H
Q 037346 374 PTLRNINLKVFHGMRVAVCGTVGSGKSSCLSCILGGVPKESGIIRLCGTKAYVAQSPWIQSGKIEENILFGKEMDRER-Y 452 (1156)
Q Consensus 374 ~~l~~i~l~i~~g~~~~ivG~~GsGKSTll~~i~g~~~~~~G~i~~~g~~~~v~Q~~~~~~~ti~eni~~~~~~~~~~-~ 452 (1156)
+-|+.+.--+.+|+++.|.|++|+|||||+.-++....... +.+.|++=+ .+.+. .
T Consensus 34 ~~LD~~~gGl~~G~LiiIaG~pG~GKTt~al~ia~~~a~~g------~~Vl~fSlE-----------------ms~~ql~ 90 (338)
T 4a1f_A 34 VQLDNYTSGFNKGSLVIIGARPSMGKTSLMMNMVLSALNDD------RGVAVFSLE-----------------MSAEQLA 90 (338)
T ss_dssp HHHHHHHCSBCTTCEEEEEECTTSCHHHHHHHHHHHHHHTT------CEEEEEESS-----------------SCHHHHH
T ss_pred hHHHHHhcCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHcC------CeEEEEeCC-----------------CCHHHHH
Confidence 45777666799999999999999999999988876543321 244554422 22222 2
Q ss_pred HHHHHH-hCCchhhhhCCCCCccccccCCCCCCHHHHHHHHHHHhhccCCCeeeeeCCCCCcCHHHHHHHHHHHHhcC-C
Q 037346 453 ERVLEA-CSLKKDLEVLPFGDQTIIGERGINLSGGQKQRIQIARPLYQDADIFLLDDPFSPVDDHTGAHLFKFCWVSS-S 530 (1156)
Q Consensus 453 ~~~~~~-~~l~~~~~~~~~g~~t~v~~~g~~LSgGqkqRi~lAral~~~~~illlDep~s~lD~~~~~~i~~~~~~~~-~ 530 (1156)
.+++.. .++.. ..+. . ..||+++.+|++.|...+.+++++|.|+|...+|.. ....+.+.... +
T Consensus 91 ~Rlls~~~~v~~--~~l~---------~-g~Ls~~e~~~l~~a~~~l~~~~l~I~d~~~~si~~i--~~~ir~l~~~~gg 156 (338)
T 4a1f_A 91 LRALSDLTSINM--HDLE---------S-GRLDDDQWENLAKCFDHLSQKKLFFYDKSYVRIEQI--RLQLRKLKSQHKE 156 (338)
T ss_dssp HHHHHHHHCCCH--HHHH---------H-TCCCHHHHHHHHHHHHHHHHSCEEEECCTTCCHHHH--HHHHHHHHHHCTT
T ss_pred HHHHHHhhCCCH--HHHh---------c-CCCCHHHHHHHHHHHHHHhcCCeEEeCCCCCcHHHH--HHHHHHHHHhcCC
Confidence 233222 22221 1110 0 269999999999999999999999999987654422 22223333344 6
Q ss_pred CEEEEEcc
Q 037346 531 KTVIYATH 538 (1156)
Q Consensus 531 ~tvi~vtH 538 (1156)
..+|+|-|
T Consensus 157 ~~lIVIDy 164 (338)
T 4a1f_A 157 LGIAFIDY 164 (338)
T ss_dssp EEEEEEEE
T ss_pred CCEEEEec
Confidence 67777754
|
| >2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=97.80 E-value=8.2e-07 Score=105.66 Aligned_cols=112 Identities=19% Similarity=0.275 Sum_probs=72.9
Q ss_pred CccccceEEeeCCeEEEEEcCCCCChHHHHHHHhCCCCCCCcEEEEcCe-------------EEEEecCCc-CC-CccHH
Q 037346 374 PTLRNINLKVFHGMRVAVCGTVGSGKSSCLSCILGGVPKESGIIRLCGT-------------KAYVAQSPW-IQ-SGKIE 438 (1156)
Q Consensus 374 ~~l~~i~l~i~~g~~~~ivG~~GsGKSTll~~i~g~~~~~~G~i~~~g~-------------~~~v~Q~~~-~~-~~ti~ 438 (1156)
..++++++++++| +.|+||+|+|||||+++|.++.. .|.+.+++. +.+++|... .. .-.+.
T Consensus 54 ~~~~~lg~~ip~G--vLL~GppGtGKTtLaraIa~~~~--~~~i~i~g~~~~~~~~g~~~~~v~~lfq~a~~~~p~il~I 129 (499)
T 2dhr_A 54 SRFHEMGARIPKG--VLLVGPPGVGKTHLARAVAGEAR--VPFITASGSDFVEMFVGVGAARVRDLFETAKRHAPCIVFI 129 (499)
T ss_dssp GGTTTTSCCCCSE--EEEECSSSSSHHHHHHHHHHHTT--CCEEEEEGGGGTSSCTTHHHHHHHHHTTTSSSSSSCEEEE
T ss_pred hhhhhccCCCCce--EEEECCCCCCHHHHHHHHHHHhC--CCEEEEehhHHHHhhhhhHHHHHHHHHHHHHhcCCCEEEE
Confidence 5789999999999 99999999999999999999875 677777652 123333332 11 12334
Q ss_pred HHh-hcCCCC-------CHHHHHHHHHHhCCchhhhhCCCCCccccccCCCCCCHHHHHHHHHHHhhccCCCeeeeeCCC
Q 037346 439 ENI-LFGKEM-------DRERYERVLEACSLKKDLEVLPFGDQTIIGERGINLSGGQKQRIQIARPLYQDADIFLLDDPF 510 (1156)
Q Consensus 439 eni-~~~~~~-------~~~~~~~~~~~~~l~~~~~~~~~g~~t~v~~~g~~LSgGqkqRi~lAral~~~~~illlDep~ 510 (1156)
|+| .++... .+++ .+.+.. . -..|||||+|+..+++|...+|++ ||+++
T Consensus 130 DEId~l~~~r~~~~~~~~~e~-~~~l~~-----L---------------L~~Ldg~~~~~~viviAatn~p~~--LD~aL 186 (499)
T 2dhr_A 130 DEIDAVGRKRGSGVGGGNDER-EQTLNQ-----L---------------LVEMDGFEKDTAIVVMAATNRPDI--LDPAL 186 (499)
T ss_dssp ECGGGTCCCSSSSTTTSSHHH-HHHHHH-----H---------------HHHGGGCCSSCCCEEEECCSCGGG--SCTTT
T ss_pred ehHHHHHHhhccCcCCCcHHH-HHHHHH-----H---------------HHHhcccccCccEEEEEecCChhh--cCccc
Confidence 444 222110 1111 111111 0 124789999999999999999987 89887
Q ss_pred CC
Q 037346 511 SP 512 (1156)
Q Consensus 511 s~ 512 (1156)
--
T Consensus 187 lr 188 (499)
T 2dhr_A 187 LR 188 (499)
T ss_dssp SS
T ss_pred cc
Confidence 53
|
| >2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=97.77 E-value=0.0001 Score=84.52 Aligned_cols=60 Identities=17% Similarity=0.092 Sum_probs=46.0
Q ss_pred CCCCCHHHHHHHHHHHhhccCCCeeeee-CCCCCcCHHHHHHHHHHHHhc-CCCEEEEEc--cCC
Q 037346 480 GINLSGGQKQRIQIARPLYQDADIFLLD-DPFSPVDDHTGAHLFKFCWVS-SSKTVIYAT--HQV 540 (1156)
Q Consensus 480 g~~LSgGqkqRi~lAral~~~~~illlD-ep~s~lD~~~~~~i~~~~~~~-~~~tvi~vt--H~~ 540 (1156)
...+|+|++|++. +.+...++-++++| ++.+++|......+++.+... .++.+|+|. ||+
T Consensus 229 ~~~~~~~~~~~~~-~~~~~ad~illV~D~s~~~~~~~~~~~~~~~~i~~~~~~~piilV~NK~Dl 292 (357)
T 2e87_A 229 ISERNEIEKQAIL-ALRYLGNLIIYIFDPSEHCGFPLEEQIHLFEEVHGEFKDLPFLVVINKIDV 292 (357)
T ss_dssp STTSCHHHHHHHH-GGGGTCSEEEEEECTTCTTSSCHHHHHHHHHHHHHHTTTSCEEEEECCTTT
T ss_pred hhhhhHHHHHHHH-HHHhcCCEEEEEEeCCccccCCHHHHHHHHHHHHHhcCCCCEEEEEECccc
Confidence 3468999999887 66666777889999 999999998877777665442 377888888 554
|
| >3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A* | Back alignment and structure |
|---|
Probab=97.77 E-value=2.4e-06 Score=89.65 Aligned_cols=49 Identities=24% Similarity=0.231 Sum_probs=42.4
Q ss_pred CCCccccceEEeeCCeEEEEEcCCCCChHHHHHHHhCCCCCCCcEE--EEcC
Q 037346 372 PNPTLRNINLKVFHGMRVAVCGTVGSGKSSCLSCILGGVPKESGII--RLCG 421 (1156)
Q Consensus 372 ~~~~l~~i~l~i~~g~~~~ivG~~GsGKSTll~~i~g~~~~~~G~i--~~~g 421 (1156)
.....+..++..++|++++|+|||||||||+++.|++.+. ..|.+ .++|
T Consensus 11 ~~~~~~~~~~~~~~g~~i~l~G~sGsGKSTl~~~La~~l~-~~G~~~~~~d~ 61 (200)
T 3uie_A 11 SVEKVDRQRLLDQKGCVIWVTGLSGSGKSTLACALNQMLY-QKGKLCYILDG 61 (200)
T ss_dssp CCCHHHHHHHHTSCCEEEEEECSTTSSHHHHHHHHHHHHH-HTTCCEEEEEH
T ss_pred ccCHHHHHHhcCCCCeEEEEECCCCCCHHHHHHHHHHHHH-hcCceEEEecC
Confidence 4567788899999999999999999999999999999987 67876 5553
|
| >2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=97.75 E-value=1.2e-05 Score=84.47 Aligned_cols=35 Identities=17% Similarity=0.287 Sum_probs=29.5
Q ss_pred EEeeCCeEEEEEcCCCCChHHHHHHHhCCCCCCCc
Q 037346 381 LKVFHGMRVAVCGTVGSGKSSCLSCILGGVPKESG 415 (1156)
Q Consensus 381 l~i~~g~~~~ivG~~GsGKSTll~~i~g~~~~~~G 415 (1156)
+++++|++++|+|||||||||+++.|.+.+.|+.|
T Consensus 1 m~i~~g~~i~l~G~~GsGKSTl~~~L~~~~~~~~~ 35 (207)
T 2j41_A 1 MDNEKGLLIVLSGPSGVGKGTVRKRIFEDPSTSYK 35 (207)
T ss_dssp ---CCCCEEEEECSTTSCHHHHHHHHHHCTTCCEE
T ss_pred CCCCCCCEEEEECCCCCCHHHHHHHHHHhhCCCeE
Confidence 46889999999999999999999999999966544
|
| >3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus} | Back alignment and structure |
|---|
Probab=97.70 E-value=1.8e-05 Score=97.48 Aligned_cols=137 Identities=15% Similarity=0.186 Sum_probs=82.6
Q ss_pred EEEEEEEcCCCCceeeCCCCCCHHHHHHHHhhcccCCC-ceEEEcCeeCCCCChHHHhhcCeeecccc------------
Q 037346 951 RHLQVRYAPNLPLVLRGRTGSGKSTLIQTLFRIVESTA-GHILIDGKDISLIGLHDLRTRLSIIPQDP------------ 1017 (1156)
Q Consensus 951 ~~Vsf~Y~~~~~~vL~G~SGsGKSTL~~lL~rl~~p~~-G~I~idG~di~~i~~~~LR~~i~~VpQdp------------ 1017 (1156)
+++++...++..+.|.||+|+|||||+++|.++..+.. |.+.+++.+.... ...++++||..
T Consensus 51 ~~l~~~i~~g~~vll~Gp~GtGKTtlar~ia~~l~~~~~~~~~~~~~~~~~~-----~p~i~~~p~g~~~~~~e~~~~~~ 125 (604)
T 3k1j_A 51 EVIKTAANQKRHVLLIGEPGTGKSMLGQAMAELLPTETLEDILVFPNPEDEN-----MPRIKTVPACQGRRIVEKYREKA 125 (604)
T ss_dssp HHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHTSCCSSCEEEEEECCTTCTT-----SCEEEEEETTHHHHHHHHHHHHH
T ss_pred hhccccccCCCEEEEEeCCCCCHHHHHHHHhccCCcccCCeEEEeCCccccc-----CCcEEEEecchHHHHHHHHHHhh
Confidence 44444455667788889999999999999999999887 8899988766543 34577877654
Q ss_pred ----------ccc-cccchhccCCCCCC---------CHHHHHHHHHHcCCChHHHhhcCCcccc-------ccccccCC
Q 037346 1018 ----------TMF-EGTTRSNLDPLEEH---------ADEQIWEALDKCQLGDEVRKKKGKLDSQ-------GRVLLKKS 1070 (1156)
Q Consensus 1018 ----------~LF-~gTIr~Nl~~~~~~---------~deei~~al~~~~l~~~i~~lp~gl~s~-------ARALLr~~ 1070 (1156)
..| .-++.+|+...+.. ......+........ ....+++.++ ++....++
T Consensus 126 ~~~~~~r~~~~~~~~~~~~~nl~v~~~~~~~~~~v~~~~~~~~~L~G~~~~~---~~~~g~~~~g~~~~i~~g~~~~a~~ 202 (604)
T 3k1j_A 126 KSQESVKSSNMRLKSTVLVPKLLVDNCGRTKAPFIDATGAHAGALLGDVRHD---PFQSGGLGTPAHERVEPGMIHRAHK 202 (604)
T ss_dssp HHHTCC-----------CCCEEEECCTTCSSCCEEECTTCCHHHHHCEECCC---CC----CCCCGGGGEECCHHHHTTT
T ss_pred ccchhhhhhcccccccccccceeeccccCCCCCEEEcCCCCHHhcCceEEec---hhhcCCccccccccccCceeeecCC
Confidence 112 22455555321100 000011111111000 0111233332 45556688
Q ss_pred CEEEEecCCcCCCHHHHHHHHHHHHH
Q 037346 1071 KVLVLDEATASVDTATDNQIQQTLRQ 1096 (1156)
Q Consensus 1071 ~ILiLDEaTS~LD~~te~~I~~~l~~ 1096 (1156)
.+|+|||... |++.....+.++|++
T Consensus 203 gvL~LDEi~~-l~~~~q~~Ll~~Le~ 227 (604)
T 3k1j_A 203 GVLFIDEIAT-LSLKMQQSLLTAMQE 227 (604)
T ss_dssp SEEEETTGGG-SCHHHHHHHHHHHHH
T ss_pred CEEEEechhh-CCHHHHHHHHHHHHc
Confidence 9999999998 799988888888874
|
| >2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A* | Back alignment and structure |
|---|
Probab=97.64 E-value=1.3e-05 Score=99.58 Aligned_cols=121 Identities=15% Similarity=0.035 Sum_probs=69.3
Q ss_pred eEEeeCCeEEEEEcCCCCChHHHHHHHhCCCCC--CCcEEEEcCe-------------EEEEecCCcCCCccHHHHhhcC
Q 037346 380 NLKVFHGMRVAVCGTVGSGKSSCLSCILGGVPK--ESGIIRLCGT-------------KAYVAQSPWIQSGKIEENILFG 444 (1156)
Q Consensus 380 ~l~i~~g~~~~ivG~~GsGKSTll~~i~g~~~~--~~G~i~~~g~-------------~~~v~Q~~~~~~~ti~eni~~~ 444 (1156)
++++++|..++|+|++|+|||||++.|++...+ ..|+| .+|. +++.+|.+.++..+++.||.
T Consensus 3 s~~~~~~~~i~IiG~~gaGKTTLl~~L~~~~~~~~~~G~V-~~g~~~~d~~~~e~~~giti~~~~~~~~~~~~~~nli-- 79 (665)
T 2dy1_A 3 TEGGAMIRTVALVGHAGSGKTTLTEALLYKTGAKERRGRV-EEGTTTTDYTPEAKLHRTTVRTGVAPLLFRGHRVFLL-- 79 (665)
T ss_dssp ---CCCEEEEEEEESTTSSHHHHHHHHHHHTTSSSSCCCG-GGTCCSSCCSHHHHHTTSCCSCEEEEEEETTEEEEEE--
T ss_pred CCccCCCcEEEEECCCCChHHHHHHHHHHhcCCCCcccee-cCCcccccCCHHHHhcCCeEEecceEEeeCCEEEEEE--
Confidence 456789999999999999999999999976654 45655 2221 12222222222222222221
Q ss_pred CCCCHHHHHHHHHHhCCchhhhhCCCCCccccccCCC-CCCHHHHHHHHHHHhhccCCCeeeeeCCCCCcCHHHHHHHHH
Q 037346 445 KEMDRERYERVLEACSLKKDLEVLPFGDQTIIGERGI-NLSGGQKQRIQIARPLYQDADIFLLDDPFSPVDDHTGAHLFK 523 (1156)
Q Consensus 445 ~~~~~~~~~~~~~~~~l~~~~~~~~~g~~t~v~~~g~-~LSgGqkqRi~lAral~~~~~illlDep~s~lD~~~~~~i~~ 523 (1156)
...|. .++ . ...+..-..++.++++| |+.++|+.+.+.+ +
T Consensus 80 --------------------------------DTpG~~~f~-~----~~~~~l~~ad~~ilVvD-~~~g~~~qt~~~~-~ 120 (665)
T 2dy1_A 80 --------------------------------DAPGYGDFV-G----EIRGALEAADAALVAVS-AEAGVQVGTERAW-T 120 (665)
T ss_dssp --------------------------------ECCCSGGGH-H----HHHHHHHHCSEEEEEEE-TTTCSCHHHHHHH-H
T ss_pred --------------------------------eCCCccchH-H----HHHHHHhhcCcEEEEEc-CCcccchhHHHHH-H
Confidence 11111 111 1 11111123566788888 9999999887544 4
Q ss_pred HHHhcCCCEEEEEccCCCcc
Q 037346 524 FCWVSSSKTVIYATHQVEFL 543 (1156)
Q Consensus 524 ~~~~~~~~tvi~vtH~~~~~ 543 (1156)
.+. ..+.++|++.|.++..
T Consensus 121 ~~~-~~~ip~ilv~NKiD~~ 139 (665)
T 2dy1_A 121 VAE-RLGLPRMVVVTKLDKG 139 (665)
T ss_dssp HHH-HTTCCEEEEEECGGGC
T ss_pred HHH-HccCCEEEEecCCchh
Confidence 332 3467888898887653
|
| >2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A* | Back alignment and structure |
|---|
Probab=97.63 E-value=3.5e-05 Score=81.06 Aligned_cols=50 Identities=14% Similarity=0.240 Sum_probs=41.8
Q ss_pred EEeeCCeEEEEEcCCCCChHHHHHHHhCCCCCCCcEEEEcCeEEEEecCCcCCCccHHHHhhc
Q 037346 381 LKVFHGMRVAVCGTVGSGKSSCLSCILGGVPKESGIIRLCGTKAYVAQSPWIQSGKIEENILF 443 (1156)
Q Consensus 381 l~i~~g~~~~ivG~~GsGKSTll~~i~g~~~~~~G~i~~~g~~~~v~Q~~~~~~~ti~eni~~ 443 (1156)
=++++|++++|+|++||||||+++.|.+.++ .+.+++|++.++.+ +|+.+
T Consensus 16 ~~~~~~~~i~i~G~~GsGKSTl~~~L~~~~~----------~~~~i~~D~~~~~~---~~~~~ 65 (207)
T 2qt1_A 16 PRGSKTFIIGISGVTNSGKTTLAKNLQKHLP----------NCSVISQDDFFKPE---SEIET 65 (207)
T ss_dssp CCSCCCEEEEEEESTTSSHHHHHHHHHTTST----------TEEEEEGGGGBCCG---GGSCB
T ss_pred ccCCCCeEEEEECCCCCCHHHHHHHHHHhcC----------CcEEEeCCccccCH---hHhhc
Confidence 3578899999999999999999999999875 36899999988765 55544
|
| >1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20 | Back alignment and structure |
|---|
Probab=97.59 E-value=1.2e-06 Score=97.21 Aligned_cols=65 Identities=17% Similarity=0.149 Sum_probs=53.2
Q ss_pred ceeeCCCCCCHHHHHHHHhhcccCCCceEEEcCeeCCCCChHHHhhcCeeeccccc-ccc-ccchhccC
Q 037346 963 LVLRGRTGSGKSTLIQTLFRIVESTAGHILIDGKDISLIGLHDLRTRLSIIPQDPT-MFE-GTTRSNLD 1029 (1156)
Q Consensus 963 ~vL~G~SGsGKSTL~~lL~rl~~p~~G~I~idG~di~~i~~~~LR~~i~~VpQdp~-LF~-gTIr~Nl~ 1029 (1156)
+.|.||+|||||||+++|.+... .|.|.++|.++.+......++.++.++|++. .+. -++.||++
T Consensus 76 vll~Gp~GtGKTtl~~~i~~~~~--~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~i~~iDeid 142 (278)
T 1iy2_A 76 VLLVGPPGVGKTHLARAVAGEAR--VPFITASGSDFVEMFVGVGAARVRDLFETAKRHAPCIVFIDEID 142 (278)
T ss_dssp EEEECCTTSSHHHHHHHHHHHTT--CCEEEEEHHHHHHSTTTHHHHHHHHHHHHHHTSCSEEEEEETHH
T ss_pred EEEECCCcChHHHHHHHHHHHcC--CCEEEecHHHHHHHHhhHHHHHHHHHHHHHHhcCCcEEehhhhH
Confidence 67889999999999999999885 8999999988876666667788889999874 333 36778875
|
| >1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=97.59 E-value=1.7e-05 Score=81.58 Aligned_cols=34 Identities=15% Similarity=0.190 Sum_probs=28.7
Q ss_pred eCCeEEEEEcCCCCChHHHHHHHhCCCCC-CCcEE
Q 037346 384 FHGMRVAVCGTVGSGKSSCLSCILGGVPK-ESGII 417 (1156)
Q Consensus 384 ~~g~~~~ivG~~GsGKSTll~~i~g~~~~-~~G~i 417 (1156)
.+|++++|+||||||||||++.|++.+++ ..|.|
T Consensus 3 ~~g~~i~i~GpsGsGKSTL~~~L~~~~~~~~~~~i 37 (180)
T 1kgd_A 3 HMRKTLVLLGAHGVGRRHIKNTLITKHPDRFAYPI 37 (180)
T ss_dssp CCCCEEEEECCTTSSHHHHHHHHHHHCTTTEECCC
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhhCCccEEEee
Confidence 36899999999999999999999999874 34443
|
| >4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP} | Back alignment and structure |
|---|
Probab=97.57 E-value=1.8e-05 Score=82.83 Aligned_cols=59 Identities=19% Similarity=0.211 Sum_probs=44.7
Q ss_pred cCCCCceeeCCCCCCHHHHHHHHhhcccCCCceEEEcCeeCCCCChHHHhhcCeeecccccccc
Q 037346 958 APNLPLVLRGRTGSGKSTLIQTLFRIVESTAGHILIDGKDISLIGLHDLRTRLSIIPQDPTMFE 1021 (1156)
Q Consensus 958 ~~~~~~vL~G~SGsGKSTL~~lL~rl~~p~~G~I~idG~di~~i~~~~LR~~i~~VpQdp~LF~ 1021 (1156)
+++..++|.|++||||||++++|.+.+ |.+.+||.++..- ....+...++++|++.++.
T Consensus 27 ~~g~~i~l~G~~GsGKSTl~~~L~~~~----g~~~i~~d~~~~~-~~~~~~~~g~~~~~~~~~~ 85 (200)
T 4eun_A 27 EPTRHVVVMGVSGSGKTTIAHGVADET----GLEFAEADAFHSP-ENIATMQRGIPLTDEDRWP 85 (200)
T ss_dssp -CCCEEEEECCTTSCHHHHHHHHHHHH----CCEEEEGGGGSCH-HHHHHHHTTCCCCHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHhh----CCeEEcccccccH-HHHHHHhcCCCCCCccccc
Confidence 455667889999999999999999987 9999999887531 1122346799999876553
|
| >3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A* | Back alignment and structure |
|---|
Probab=97.56 E-value=8.4e-06 Score=85.42 Aligned_cols=39 Identities=31% Similarity=0.561 Sum_probs=33.6
Q ss_pred CCCceeeCCCCCCHHHHHHHHhhcccCCCceE--EEcCeeCC
Q 037346 960 NLPLVLRGRTGSGKSTLIQTLFRIVESTAGHI--LIDGKDIS 999 (1156)
Q Consensus 960 ~~~~vL~G~SGsGKSTL~~lL~rl~~p~~G~I--~idG~di~ 999 (1156)
+..++|.|+|||||||++++|.+.+. ..|.+ ++||.++.
T Consensus 25 g~~i~l~G~sGsGKSTl~~~La~~l~-~~G~~~~~~d~d~~~ 65 (200)
T 3uie_A 25 GCVIWVTGLSGSGKSTLACALNQMLY-QKGKLCYILDGDNVR 65 (200)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHHH-HTTCCEEEEEHHHHT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHH-hcCceEEEecCchhh
Confidence 44467889999999999999999998 78988 99987665
|
| >4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP} | Back alignment and structure |
|---|
Probab=97.55 E-value=2.2e-05 Score=82.13 Aligned_cols=38 Identities=21% Similarity=0.177 Sum_probs=29.8
Q ss_pred eEEeeCCeEEEEEcCCCCChHHHHHHHhCCCCCCCcEEEEcC
Q 037346 380 NLKVFHGMRVAVCGTVGSGKSSCLSCILGGVPKESGIIRLCG 421 (1156)
Q Consensus 380 ~l~i~~g~~~~ivG~~GsGKSTll~~i~g~~~~~~G~i~~~g 421 (1156)
-++.++|++++|+||||||||||++.|.|.+ |.+.++|
T Consensus 23 ~m~~~~g~~i~l~G~~GsGKSTl~~~L~~~~----g~~~i~~ 60 (200)
T 4eun_A 23 MMTGEPTRHVVVMGVSGSGKTTIAHGVADET----GLEFAEA 60 (200)
T ss_dssp -----CCCEEEEECCTTSCHHHHHHHHHHHH----CCEEEEG
T ss_pred hhcCCCCcEEEEECCCCCCHHHHHHHHHHhh----CCeEEcc
Confidence 3667899999999999999999999999876 7777665
|
| >1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A* | Back alignment and structure |
|---|
Probab=97.53 E-value=1.5e-06 Score=98.96 Aligned_cols=67 Identities=22% Similarity=0.259 Sum_probs=50.0
Q ss_pred CCceeeCCCCCCHHHHHHHHhhcc----cCCCceEEEcCeeCCCCChHHHhhcCeeeccccccccccchhcc
Q 037346 961 LPLVLRGRTGSGKSTLIQTLFRIV----ESTAGHILIDGKDISLIGLHDLRTRLSIIPQDPTMFEGTTRSNL 1028 (1156)
Q Consensus 961 ~~~vL~G~SGsGKSTL~~lL~rl~----~p~~G~I~idG~di~~i~~~~LR~~i~~VpQdp~LF~gTIr~Nl 1028 (1156)
..++|.||+|+|||||++++++.. .+.+|.+..+|.|+..+.....+..|.+|+|.+.++. ++.+++
T Consensus 52 ~~~ll~Gp~G~GKTTLa~~ia~~l~~~~~~~sg~~~~~~~~l~~~~~~~~~~~v~~iDE~~~l~~-~~~e~L 122 (334)
T 1in4_A 52 DHVLLAGPPGLGKTTLAHIIASELQTNIHVTSGPVLVKQGDMAAILTSLERGDVLFIDEIHRLNK-AVEELL 122 (334)
T ss_dssp CCEEEESSTTSSHHHHHHHHHHHHTCCEEEEETTTCCSHHHHHHHHHHCCTTCEEEEETGGGCCH-HHHHHH
T ss_pred CeEEEECCCCCcHHHHHHHHHHHhCCCEEEEechHhcCHHHHHHHHHHccCCCEEEEcchhhcCH-HHHHHH
Confidence 346788999999999999999998 7788888877766543311112456899999887765 666665
|
| >3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0 | Back alignment and structure |
|---|
Probab=97.51 E-value=3.3e-05 Score=80.10 Aligned_cols=74 Identities=19% Similarity=0.333 Sum_probs=47.3
Q ss_pred eEEeeCCeEEEEEcCCCCChHHHHHHHhCCCC-------------CCCcEEEEcCeE----------EEEecCCcCCCcc
Q 037346 380 NLKVFHGMRVAVCGTVGSGKSSCLSCILGGVP-------------KESGIIRLCGTK----------AYVAQSPWIQSGK 436 (1156)
Q Consensus 380 ~l~i~~g~~~~ivG~~GsGKSTll~~i~g~~~-------------~~~G~i~~~g~~----------~~v~Q~~~~~~~t 436 (1156)
|+...+|++++|+||||||||||++.|++.++ |..|+ ++|.. ..+.|+.+++.++
T Consensus 13 ~~~~~~g~~ivl~GPSGaGKsTL~~~L~~~~~~~~~~~vs~TTR~p~~gE--~~G~~y~fvs~~~f~~~i~~~~fle~~~ 90 (197)
T 3ney_A 13 NLYFQGRKTLVLIGASGVGRSHIKNALLSQNPEKFVYPVPYTTRPPRKSE--EDGKEYHFISTEEMTRNISANEFLEFGS 90 (197)
T ss_dssp ---CCSCCEEEEECCTTSSHHHHHHHHHHHCTTTEECCCCEECSCCCTTC--CTTSSCEECCHHHHHHHHHTTCEEEEEE
T ss_pred cCCCCCCCEEEEECcCCCCHHHHHHHHHhhCCccEEeeecccccCCcCCe--eccccceeccHHHhhhhhhhhhhhhhhh
Confidence 45556899999999999999999999999886 44555 34421 1234455566666
Q ss_pred HHHHhhcCCCCCHHHHHHHHHH
Q 037346 437 IEENILFGKEMDRERYERVLEA 458 (1156)
Q Consensus 437 i~eni~~~~~~~~~~~~~~~~~ 458 (1156)
+.+| .+|.+ .+..++++++
T Consensus 91 ~~~n-~YGt~--~~~v~~~l~~ 109 (197)
T 3ney_A 91 YQGN-MFGTK--FETVHQIHKQ 109 (197)
T ss_dssp ETTE-EEEEE--HHHHHHHHHT
T ss_pred hhce-ecccc--hhhHHHHHhc
Confidence 6666 35532 3344555443
|
| >3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A | Back alignment and structure |
|---|
Probab=97.50 E-value=2.1e-05 Score=88.54 Aligned_cols=53 Identities=13% Similarity=0.093 Sum_probs=48.0
Q ss_pred ccEEEeeeEEEeCCCCCCCccc--------------cceEEeeCCeEEEEEcCCCCChHHHHHHHhCCC
Q 037346 356 TAIEIIDGSFSWDFSSPNPTLR--------------NINLKVFHGMRVAVCGTVGSGKSSCLSCILGGV 410 (1156)
Q Consensus 356 ~~i~~~~~~f~~~~~~~~~~l~--------------~i~l~i~~g~~~~ivG~~GsGKSTll~~i~g~~ 410 (1156)
+.+.|+|++|.||. ++..|+ |+++.+.+|+.++|+||+|||||||++.|.+..
T Consensus 132 ~ri~Fe~ltp~yP~--er~~Le~~~~~~~~tGiraID~~~pi~rGQr~~IvG~sG~GKTtLl~~Iar~i 198 (422)
T 3ice_A 132 NKILFENLTPLHAN--SRLRMERGNGSTEDLTARVLDLASPIGRGQRGLIVAPPKAGKTMLLQNIAQSI 198 (422)
T ss_dssp TSCCTTTSCEESCC--SBCCCCCTTCCTTHHHHHHHHHHSCCBTTCEEEEECCSSSSHHHHHHHHHHHH
T ss_pred CCceeccccccCCC--CccccccCCCCcccccceeeeeeeeecCCcEEEEecCCCCChhHHHHHHHHHH
Confidence 45889999999984 467888 899999999999999999999999999998865
|
| >3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=97.48 E-value=2.5e-05 Score=82.34 Aligned_cols=81 Identities=22% Similarity=0.192 Sum_probs=56.4
Q ss_pred CCCCceeeCCCCCCHHHHHHHHhhcccC-CCceEE----------EcCeeCCCCChHHHhhcCeeeccccccccccchhc
Q 037346 959 PNLPLVLRGRTGSGKSTLIQTLFRIVES-TAGHIL----------IDGKDISLIGLHDLRTRLSIIPQDPTMFEGTTRSN 1027 (1156)
Q Consensus 959 ~~~~~vL~G~SGsGKSTL~~lL~rl~~p-~~G~I~----------idG~di~~i~~~~LR~~i~~VpQdp~LF~gTIr~N 1027 (1156)
++..++|.||||||||||++.|.+.+++ ..+.+. .+|++...++.+.+++.+ .|+.+++.+++..|
T Consensus 7 ~g~~i~l~GpsGsGKsTl~~~L~~~~~~~~~~~~~~~tr~~~~~e~~g~~y~~~~~~~f~~~~---~~~~~le~~~~~~~ 83 (208)
T 3tau_A 7 RGLLIVLSGPSGVGKGTVREAVFKDPETSFDYSISMTTRLPREGEQDGVDYYFRSREVFEQAI---KDGKMLEYAEYVGN 83 (208)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHSTTCCCEECCCEESSCCCTTCCBTTTBEECCHHHHHHHH---HTTCEEEEEEETTE
T ss_pred CCcEEEEECcCCCCHHHHHHHHHhhCCCcEEEEEecccccCcCcccCCceeEEecHHHHHHHH---hcCcEEEEEEEccc
Confidence 3455688899999999999999999976 333333 456666666777777655 67778888888777
Q ss_pred cCCCCCCCHHHHHHHHHH
Q 037346 1028 LDPLEEHADEQIWEALDK 1045 (1156)
Q Consensus 1028 l~~~~~~~deei~~al~~ 1045 (1156)
. ++ .+.+.+.++++.
T Consensus 84 ~-yg--~~~~~i~~~l~~ 98 (208)
T 3tau_A 84 Y-YG--TPLEYVEEKLAA 98 (208)
T ss_dssp E-EE--EEHHHHHHHHHT
T ss_pred c-CC--CcHHHHHHHHHc
Confidence 4 22 124556555554
|
| >3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=97.47 E-value=0.00031 Score=79.74 Aligned_cols=35 Identities=23% Similarity=0.284 Sum_probs=30.6
Q ss_pred EeeCCeEEEEEcCCCCChHHHHHHHhCCCCCCCcE
Q 037346 382 KVFHGMRVAVCGTVGSGKSSCLSCILGGVPKESGI 416 (1156)
Q Consensus 382 ~i~~g~~~~ivG~~GsGKSTll~~i~g~~~~~~G~ 416 (1156)
-+++|+++.|.||+|||||||+..+++...+..|.
T Consensus 57 Gi~~G~i~~I~GppGsGKSTLal~la~~~~~~gg~ 91 (356)
T 3hr8_A 57 GYPRGRIVEIFGQESSGKTTLALHAIAEAQKMGGV 91 (356)
T ss_dssp SEETTEEEEEEESTTSSHHHHHHHHHHHHHHTTCC
T ss_pred CccCCcEEEEECCCCCCHHHHHHHHHHHHHhcCCe
Confidence 48899999999999999999999999887765443
|
| >2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A* | Back alignment and structure |
|---|
Probab=97.44 E-value=6.7e-05 Score=88.51 Aligned_cols=66 Identities=15% Similarity=0.339 Sum_probs=45.6
Q ss_pred CCCEEEEecCCcCCCH-HHHHHHHHHHHHhc-CCceEEEeecCc-ccccc-cCEEEE-EeCcEEeeecChh
Q 037346 1069 KSKVLVLDEATASVDT-ATDNQIQQTLRQHF-SDCTVVTIAHRI-TSVLD-SAMVLL-LNHGLIKEYDSPT 1134 (1156)
Q Consensus 1069 ~~~ILiLDEaTS~LD~-~te~~I~~~l~~~~-~~~TvI~IaHrl-~ti~~-~D~I~V-l~~G~IvE~G~~~ 1134 (1156)
+++||++||+..-.+. .+...+...+.... .++++|+.+|+. ..+.. .+++.- ++.|.+++.+.|.
T Consensus 194 ~~~vL~IDEi~~l~~~~~~q~~l~~~l~~l~~~~~~iIitt~~~~~~l~~l~~~L~sR~~~g~~i~l~~p~ 264 (440)
T 2z4s_A 194 KVDILLIDDVQFLIGKTGVQTELFHTFNELHDSGKQIVICSDREPQKLSEFQDRLVSRFQMGLVAKLEPPD 264 (440)
T ss_dssp TCSEEEEECGGGGSSCHHHHHHHHHHHHHHHTTTCEEEEEESSCGGGCSSCCHHHHHHHHSSBCCBCCCCC
T ss_pred CCCEEEEeCcccccCChHHHHHHHHHHHHHHHCCCeEEEEECCCHHHHHHHHHHHHhhccCCeEEEeCCCC
Confidence 8899999999887764 56667777776643 467888899984 33332 223332 5668888887764
|
| >3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1} | Back alignment and structure |
|---|
Probab=97.44 E-value=0.00011 Score=82.61 Aligned_cols=131 Identities=8% Similarity=0.056 Sum_probs=78.9
Q ss_pred CCccccceEEeeCCeEEEEEcCCCCChHHHHHHHhCCCCCCCcEEEEcCeEEEEecCCcCCCccHHHHhhcCCCCCHHHH
Q 037346 373 NPTLRNINLKVFHGMRVAVCGTVGSGKSSCLSCILGGVPKESGIIRLCGTKAYVAQSPWIQSGKIEENILFGKEMDRERY 452 (1156)
Q Consensus 373 ~~~l~~i~l~i~~g~~~~ivG~~GsGKSTll~~i~g~~~~~~G~i~~~g~~~~v~Q~~~~~~~ti~eni~~~~~~~~~~~ 452 (1156)
-+.|+++.--+++|+++.|.|++|+|||||+..++...-. .| ..+.|++=+ .+.+.+
T Consensus 55 ~~~LD~~lgGl~~G~l~li~G~pG~GKTtl~l~ia~~~a~-~g-----~~vl~~slE-----------------~s~~~l 111 (315)
T 3bh0_A 55 FTELDRMTYGYKRRNFVLIAARPSMGKTAFALKQAKNMSD-ND-----DVVNLHSLE-----------------MGKKEN 111 (315)
T ss_dssp CHHHHHHHSSBCTTCEEEEECCTTSSHHHHHHHHHHHHHT-TT-----CEEEEEESS-----------------SCHHHH
T ss_pred hHHHHhhcCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHH-cC-----CeEEEEECC-----------------CCHHHH
Confidence 3467777766999999999999999999999887743221 22 245554422 222222
Q ss_pred -HHHHHH-hCCchhhhhCCCCCccccccCCCCCCHHHHHHHHHHHhhccCCCeeeeeCCCCCcCHHHHHHHHHHHHhcCC
Q 037346 453 -ERVLEA-CSLKKDLEVLPFGDQTIIGERGINLSGGQKQRIQIARPLYQDADIFLLDDPFSPVDDHTGAHLFKFCWVSSS 530 (1156)
Q Consensus 453 -~~~~~~-~~l~~~~~~~~~g~~t~v~~~g~~LSgGqkqRi~lAral~~~~~illlDep~s~lD~~~~~~i~~~~~~~~~ 530 (1156)
.+++.. .++. +..+..| . ..||+++++|+..|...+.++++++.|+|...++... ...+.+....+
T Consensus 112 ~~R~~~~~~~i~--~~~l~~~------~--~~l~~~~~~~l~~a~~~l~~~~i~i~d~~~~~~~~i~--~~i~~l~~~~~ 179 (315)
T 3bh0_A 112 IKRLIVTAGSIN--AQKIKAA------R--RDFASEDWGKLSMAIGEISNSNINIFDKAGQSVNYIW--SKTRQTKRKNP 179 (315)
T ss_dssp HHHHHHHHTTCC--HHHHHSC------H--HHHCSSCHHHHHHHHHHHHTSCEEEECCSCCBHHHHH--HHHHHHHHTSS
T ss_pred HHHHHHHHcCCC--HHHHhcC------C--CCCCHHHHHHHHHHHHHHhCCCEEEECCCCCCHHHHH--HHHHHHHHhcC
Confidence 222221 1221 1111111 0 1399999999999999999999999999875543321 12222223335
Q ss_pred CE--EEEEcc
Q 037346 531 KT--VIYATH 538 (1156)
Q Consensus 531 ~t--vi~vtH 538 (1156)
.. +|+|-|
T Consensus 180 ~~~~lVVID~ 189 (315)
T 3bh0_A 180 GKRVIVMIDY 189 (315)
T ss_dssp SCCEEEEEEC
T ss_pred CCCeEEEEeC
Confidence 45 776655
|
| >2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A* | Back alignment and structure |
|---|
Probab=97.43 E-value=7.1e-05 Score=84.65 Aligned_cols=127 Identities=17% Similarity=0.223 Sum_probs=73.6
Q ss_pred cCCCCceeeCCCCCCHHHHHHHHhhcc-cC------CCceEEEcCeeCCCCChHHHh---hcCeeeccccccccccchhc
Q 037346 958 APNLPLVLRGRTGSGKSTLIQTLFRIV-ES------TAGHILIDGKDISLIGLHDLR---TRLSIIPQDPTMFEGTTRSN 1027 (1156)
Q Consensus 958 ~~~~~~vL~G~SGsGKSTL~~lL~rl~-~p------~~G~I~idG~di~~i~~~~LR---~~i~~VpQdp~LF~gTIr~N 1027 (1156)
+++.-+.|.|++|||||||+..+..-. .+ ..+.++|+.... ++.+.++ +++++-+++ +.+|
T Consensus 105 ~~G~i~~i~G~~GsGKT~la~~la~~~~~~~~~gg~~~~vlyi~~e~~--~~~~~l~~~~~~~g~~~~~-------~~~~ 175 (324)
T 2z43_A 105 ETRTMTEFFGEFGSGKTQLCHQLSVNVQLPPEKGGLSGKAVYIDTEGT--FRWERIENMAKALGLDIDN-------VMNN 175 (324)
T ss_dssp ETTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSC--CCHHHHHHHHHHTTCCHHH-------HHHT
T ss_pred CCCcEEEEECCCCCCHhHHHHHHHHHHhcccccCCCCCeEEEEECCCC--CCHHHHHHHHHHhCCCHHH-------Hhcc
Confidence 345556788999999999999887653 33 345677876542 2344443 344543332 3356
Q ss_pred cCCCCCCCHHHHHHHHHHcCCChHHHhhcCCccccccccc---cCCCEEEEecCCcCCCHH-------H--HHHHHHHHH
Q 037346 1028 LDPLEEHADEQIWEALDKCQLGDEVRKKKGKLDSQGRVLL---KKSKVLVLDEATASVDTA-------T--DNQIQQTLR 1095 (1156)
Q Consensus 1028 l~~~~~~~deei~~al~~~~l~~~i~~lp~gl~s~ARALL---r~~~ILiLDEaTS~LD~~-------t--e~~I~~~l~ 1095 (1156)
+...+..+-++..+.++. ++.++ .+++++|+|+.|+-.+.+ + ...+.+.++
T Consensus 176 l~~~~~~~~~~~~~~l~~-----------------l~~~~~~~~~~~lvVIDsl~~l~~~~~~~~g~~~~r~~~~~~~l~ 238 (324)
T 2z43_A 176 IYYIRAINTDHQIAIVDD-----------------LQELVSKDPSIKLIVVDSVTSHFRAEYPGRENLAVRQQKLNKHLH 238 (324)
T ss_dssp EEEEECCSHHHHHHHHHH-----------------HHHHHHHCTTEEEEEETTTTHHHHHHSCTTTSHHHHHHHHHHHHH
T ss_pred EEEEeCCCHHHHHHHHHH-----------------HHHHHHhccCCCEEEEeCcHHHhhhhhcCcccHHHHHHHHHHHHH
Confidence 644444444444333322 22223 468999999999876432 1 123444433
Q ss_pred Hh---c--CCceEEEeecCc
Q 037346 1096 QH---F--SDCTVVTIAHRI 1110 (1156)
Q Consensus 1096 ~~---~--~~~TvI~IaHrl 1110 (1156)
.+ . .++|||++.|-.
T Consensus 239 ~L~~la~~~~~~Vi~~nq~~ 258 (324)
T 2z43_A 239 QLTRLAEVYDIAVIITNQVM 258 (324)
T ss_dssp HHHHHHHHHTCEEEEEEEC-
T ss_pred HHHHHHHHhCCEEEEEccee
Confidence 32 2 289999999864
|
| >2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E* | Back alignment and structure |
|---|
Probab=97.38 E-value=0.00026 Score=83.72 Aligned_cols=60 Identities=12% Similarity=0.135 Sum_probs=37.7
Q ss_pred cccccCCCEEEEecCCc----------CCCHHHHHHHHHHHHHh-----cCCceEEEeecCccccc-------ccCEEEE
Q 037346 1064 RVLLKKSKVLVLDEATA----------SVDTATDNQIQQTLRQH-----FSDCTVVTIAHRITSVL-------DSAMVLL 1121 (1156)
Q Consensus 1064 RALLr~~~ILiLDEaTS----------~LD~~te~~I~~~l~~~-----~~~~TvI~IaHrl~ti~-------~~D~I~V 1121 (1156)
+|....|.||++||+.+ +.|.+.++.+.+.+... ..+..||..||+.+.+. .+|+.+.
T Consensus 103 ~A~~~~p~ILfIDEid~l~~~r~~~~~g~~~~~~~~l~~LL~~ld~~~~~~~viVIaaTn~~~~Ld~allR~gRFd~~i~ 182 (476)
T 2ce7_A 103 QAKAHAPCIVFIDEIDAVGRHRGAGLGGGHDEREQTLNQLLVEMDGFDSKEGIIVMAATNRPDILDPALLRPGRFDKKIV 182 (476)
T ss_dssp HHHHTCSEEEEEETGGGTCCC---------CHHHHHHHHHHHHHHHSCGGGTEEEEEEESCGGGSCGGGGSTTSSCEEEE
T ss_pred HHHhcCCCEEEEechhhhhhhcccccCcCcHHHHHHHHHHHHHHhccCCCCCEEEEEecCChhhhchhhcccCcceeEee
Confidence 44445799999999944 56766666666666543 13568888999986543 4666554
Q ss_pred Ee
Q 037346 1122 LN 1123 (1156)
Q Consensus 1122 l~ 1123 (1156)
++
T Consensus 183 i~ 184 (476)
T 2ce7_A 183 VD 184 (476)
T ss_dssp CC
T ss_pred cC
Confidence 43
|
| >2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A* | Back alignment and structure |
|---|
Probab=97.36 E-value=1.7e-05 Score=85.08 Aligned_cols=57 Identities=16% Similarity=0.251 Sum_probs=44.5
Q ss_pred CCceeeCCCCCCHHHHHHHHhhcccCCCceEEEcCeeCCCC------ChHH----HhhcCeeecccccccc
Q 037346 961 LPLVLRGRTGSGKSTLIQTLFRIVESTAGHILIDGKDISLI------GLHD----LRTRLSIIPQDPTMFE 1021 (1156)
Q Consensus 961 ~~~vL~G~SGsGKSTL~~lL~rl~~p~~G~I~idG~di~~i------~~~~----LR~~i~~VpQdp~LF~ 1021 (1156)
.-++|.|++||||||++++|.++ +|+|.++|.|.... .+.. .++.+++++|++.++.
T Consensus 21 ~~i~i~G~~GsGKSTl~~~L~~~----~g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~l~~ 87 (230)
T 2vp4_A 21 FTVLIEGNIGSGKTTYLNHFEKY----KNDICLLTEPVEKWRNVNGVNLLELMYKDPKKWAMPFQSYVTLT 87 (230)
T ss_dssp EEEEEECSTTSCHHHHHHTTGGG----TTTEEEECCTHHHHTCBTTBCHHHHHHHSHHHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHhc----cCCeEEEecCHHHhhcccCCChHHHHHhChHhhhhhhHHHHHHH
Confidence 33578899999999999999998 79999999886532 1211 2567899999987764
|
| >2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=97.36 E-value=4.4e-05 Score=80.06 Aligned_cols=82 Identities=15% Similarity=0.125 Sum_probs=50.4
Q ss_pred cCCCCceeeCCCCCCHHHHHHHHhhcccCCCceEEEcCeeCCCCChHHHhhcCeeecccccc-----------ccccchh
Q 037346 958 APNLPLVLRGRTGSGKSTLIQTLFRIVESTAGHILIDGKDISLIGLHDLRTRLSIIPQDPTM-----------FEGTTRS 1026 (1156)
Q Consensus 958 ~~~~~~vL~G~SGsGKSTL~~lL~rl~~p~~G~I~idG~di~~i~~~~LR~~i~~VpQdp~L-----------F~gTIr~ 1026 (1156)
.++..++|.|+|||||||++++|.+++.|..| +.+ +.....-. ...+..+++++|++.. +..+++.
T Consensus 4 ~~g~~i~l~G~~GsGKSTl~~~L~~~~~~~~~-~~i-~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (207)
T 2j41_A 4 EKGLLIVLSGPSGVGKGTVRKRIFEDPSTSYK-YSI-SMTTRQMR-EGEVDGVDYFFKTRDAFEALIKDDQFIEYAEYVG 80 (207)
T ss_dssp CCCCEEEEECSTTSCHHHHHHHHHHCTTCCEE-CCC-CEECSCCC-TTCCBTTTBEECCHHHHHHHHHTTCEEEEEEETT
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHhhCCCeE-Eec-ccccCCCC-CCccCCCceEEcCHHHHHHHHHcCCeEEEEeECC
Confidence 34556789999999999999999999977655 222 22222211 1123347888887643 3444555
Q ss_pred ccCCCCCCCHHHHHHHHHH
Q 037346 1027 NLDPLEEHADEQIWEALDK 1045 (1156)
Q Consensus 1027 Nl~~~~~~~deei~~al~~ 1045 (1156)
|+ ++ ...+++.++++.
T Consensus 81 ~~-~g--~~~~~i~~~l~~ 96 (207)
T 2j41_A 81 NY-YG--TPVQYVKDTMDE 96 (207)
T ss_dssp EE-EE--EEHHHHHHHHHT
T ss_pred ee-cC--CCHHHHHHHHHc
Confidence 42 11 235677777764
|
| >2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A* | Back alignment and structure |
|---|
Probab=97.32 E-value=7.3e-05 Score=80.10 Aligned_cols=38 Identities=24% Similarity=0.215 Sum_probs=32.0
Q ss_pred eEEeeCCeEEEEEcCCCCChHHHHHHHhCCCCCCCcEEEEcC
Q 037346 380 NLKVFHGMRVAVCGTVGSGKSSCLSCILGGVPKESGIIRLCG 421 (1156)
Q Consensus 380 ~l~i~~g~~~~ivG~~GsGKSTll~~i~g~~~~~~G~i~~~g 421 (1156)
+.+.++|++++|+|++||||||++++|.|. .|+|.+.+
T Consensus 14 ~~~~~~g~~i~i~G~~GsGKSTl~~~L~~~----~g~v~~~~ 51 (230)
T 2vp4_A 14 YAEGTQPFTVLIEGNIGSGKTTYLNHFEKY----KNDICLLT 51 (230)
T ss_dssp BTTTCCCEEEEEECSTTSCHHHHHHTTGGG----TTTEEEEC
T ss_pred cCCCCCceEEEEECCCCCCHHHHHHHHHhc----cCCeEEEe
Confidence 345679999999999999999999999997 56666654
|
| >3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=97.32 E-value=9.5e-05 Score=77.86 Aligned_cols=29 Identities=17% Similarity=0.374 Sum_probs=27.5
Q ss_pred eCCeEEEEEcCCCCChHHHHHHHhCCCCC
Q 037346 384 FHGMRVAVCGTVGSGKSSCLSCILGGVPK 412 (1156)
Q Consensus 384 ~~g~~~~ivG~~GsGKSTll~~i~g~~~~ 412 (1156)
++|++++|+||||||||||++.|++.+++
T Consensus 6 ~~g~~i~l~GpsGsGKsTl~~~L~~~~~~ 34 (208)
T 3tau_A 6 ERGLLIVLSGPSGVGKGTVREAVFKDPET 34 (208)
T ss_dssp CCCCEEEEECCTTSCHHHHHHHHHHSTTC
T ss_pred CCCcEEEEECcCCCCHHHHHHHHHhhCCC
Confidence 58999999999999999999999999876
|
| >3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X* | Back alignment and structure |
|---|
Probab=97.32 E-value=3.1e-05 Score=79.58 Aligned_cols=98 Identities=14% Similarity=0.272 Sum_probs=59.2
Q ss_pred EEEEEEcCCCCceeeCCCCCCHHHHHHHHhhcccCCCceEEEcCe--eCCCCChH----HHhhcCeeecccccc-c--c-
Q 037346 952 HLQVRYAPNLPLVLRGRTGSGKSTLIQTLFRIVESTAGHILIDGK--DISLIGLH----DLRTRLSIIPQDPTM-F--E- 1021 (1156)
Q Consensus 952 ~Vsf~Y~~~~~~vL~G~SGsGKSTL~~lL~rl~~p~~G~I~idG~--di~~i~~~----~LR~~i~~VpQdp~L-F--~- 1021 (1156)
++++...++ ..+|.|+||||||||+.+|.++..+..|...-.+. ++-.-+.. ..+..|.++.|+|.- | .
T Consensus 19 ~~~~~~~~g-~~~i~G~NGsGKStll~ai~~~l~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~v~~~f~~~~~~~~~~~ 97 (182)
T 3kta_A 19 KVVIPFSKG-FTAIVGANGSGKSNIGDAILFVLGGLSAKAMRASRISDLIFAGSKNEPPAKYAEVAIYFNNEDRGFPIDE 97 (182)
T ss_dssp CEEEECCSS-EEEEEECTTSSHHHHHHHHHHHTTCCCTGGGTCSSGGGGBCCCC----CCSCEEEEEEEECTTCCSSSSS
T ss_pred cEEEecCCC-cEEEECCCCCCHHHHHHHHHHHHcCCcccccccccchheeecccccCCCCceEEEEEEEeCCCcccccCC
Confidence 445555555 45888999999999999999998877765433221 11111100 234578999998631 1 0
Q ss_pred --ccchhccCC---------CCCCCHHHHHHHHHHcCCCh
Q 037346 1022 --GTTRSNLDP---------LEEHADEQIWEALDKCQLGD 1050 (1156)
Q Consensus 1022 --gTIr~Nl~~---------~~~~~deei~~al~~~~l~~ 1050 (1156)
-+|+..+.. +.+.+.+++.+.++.+++..
T Consensus 98 ~~~~i~r~~~~~~~~~~~i~g~~~~~~~~~~~l~~~~l~~ 137 (182)
T 3kta_A 98 DEVVIRRRVYPDGRSSYWLNGRRATRSEILDILTAAMISP 137 (182)
T ss_dssp SEEEEEEEECTTSCEEEEETTEEECHHHHHHHHHHTTCCT
T ss_pred cEEEEEEEEEeCCcEEEEECCeEcCHHHHHHHHHHcCCCC
Confidence 122222211 12345788999999888753
|
| >1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6 | Back alignment and structure |
|---|
Probab=97.31 E-value=4.6e-05 Score=79.84 Aligned_cols=38 Identities=13% Similarity=0.132 Sum_probs=33.2
Q ss_pred EeeCCeEEEEEcCCCCChHHHHHHHhCCCCCCCcEEEE
Q 037346 382 KVFHGMRVAVCGTVGSGKSSCLSCILGGVPKESGIIRL 419 (1156)
Q Consensus 382 ~i~~g~~~~ivG~~GsGKSTll~~i~g~~~~~~G~i~~ 419 (1156)
..++|++++|+|++||||||+++.|.+.+++..|.+.+
T Consensus 18 ~~~~~~~i~i~G~~GsGKstl~~~l~~~~~~~~~~v~~ 55 (201)
T 1rz3_A 18 KTAGRLVLGIDGLSRSGKTTLANQLSQTLREQGISVCV 55 (201)
T ss_dssp CCSSSEEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEE
T ss_pred ccCCCeEEEEECCCCCCHHHHHHHHHHHHhhcCCeEEE
Confidence 35789999999999999999999999998877776654
|
| >3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=97.28 E-value=0.00073 Score=76.68 Aligned_cols=135 Identities=18% Similarity=0.173 Sum_probs=81.9
Q ss_pred cCCCCceeeCCCCCCHHHHHHHHhhcccCCCceE-EEcCeeCCCCChHHHhhcCeeeccccccccccchhccCCCCCCCH
Q 037346 958 APNLPLVLRGRTGSGKSTLIQTLFRIVESTAGHI-LIDGKDISLIGLHDLRTRLSIIPQDPTMFEGTTRSNLDPLEEHAD 1036 (1156)
Q Consensus 958 ~~~~~~vL~G~SGsGKSTL~~lL~rl~~p~~G~I-~idG~di~~i~~~~LR~~i~~VpQdp~LF~gTIr~Nl~~~~~~~d 1036 (1156)
+++.-+.|.||+|||||||+..+++...+..|.+ +||+.+..+ ....+++++.+|+..+.. +.+-
T Consensus 59 ~~G~i~~I~GppGsGKSTLal~la~~~~~~gg~VlyId~E~s~~---~~ra~rlgv~~~~l~i~~-----------~~~~ 124 (356)
T 3hr8_A 59 PRGRIVEIFGQESSGKTTLALHAIAEAQKMGGVAAFIDAEHALD---PVYAKNLGVDLKSLLISQ-----------PDHG 124 (356)
T ss_dssp ETTEEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCCC---HHHHHHHTCCGGGCEEEC-----------CSSH
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEecccccc---hHHHHHcCCchhhhhhhh-----------ccCH
Confidence 3454456779999999999999999988888865 777764432 235567888887654332 2233
Q ss_pred HHHHHHHHHcCCChHHHhhcCCccccccccccCCCEEEEecCCcCCC-HHH------------HHHHHHH---HHHh--c
Q 037346 1037 EQIWEALDKCQLGDEVRKKKGKLDSQGRVLLKKSKVLVLDEATASVD-TAT------------DNQIQQT---LRQH--F 1098 (1156)
Q Consensus 1037 eei~~al~~~~l~~~i~~lp~gl~s~ARALLr~~~ILiLDEaTS~LD-~~t------------e~~I~~~---l~~~--~ 1098 (1156)
+++.+.++. .+. -.+++++|+|+.++-.. .+- .+.+.+. |... .
T Consensus 125 e~~l~~~~~-----l~~-------------~~~~dlvVIDSi~~l~~~~el~g~~G~~q~~~qar~la~~L~~L~~lak~ 186 (356)
T 3hr8_A 125 EQALEIVDE-----LVR-------------SGVVDLIVVDSVAALVPRAEIEGAMGDMQVGLQARLMSQALRKIAGSVNK 186 (356)
T ss_dssp HHHHHHHHH-----HHH-------------TSCCSEEEEECTTTCCCHHHHTTCCCSSCSSHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHH-----Hhh-------------hcCCCeEEehHhhhhcChhhhcccchhhHHHHHHHHHHHHHHHHHHHHHh
Confidence 333332221 111 03689999999887664 111 1223232 3232 2
Q ss_pred CCceEEEeecCcc---c-------------c-cccCEEEEEeC
Q 037346 1099 SDCTVVTIAHRIT---S-------------V-LDSAMVLLLNH 1124 (1156)
Q Consensus 1099 ~~~TvI~IaHrl~---t-------------i-~~~D~I~Vl~~ 1124 (1156)
.++|||+|.|=-+ . + ..+|-++.++.
T Consensus 187 ~~~tVI~inqv~~k~g~~fg~p~~~~GG~~l~h~~~~rl~l~k 229 (356)
T 3hr8_A 187 SKAVVIFTNQIRMKIGVMFGSPETTTGGLALKFYATMRMEVRR 229 (356)
T ss_dssp SSCEEEEEEESSSCSSSSSCSCSSCTHHHHHHHHCSEEEEEEE
T ss_pred cCCEEEEEeeeeeccccccCCcccCCCcchhhhhCcEEEEEEe
Confidence 4789999887521 1 1 24788888875
|
| >2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A* | Back alignment and structure |
|---|
Probab=97.27 E-value=2.7e-05 Score=81.90 Aligned_cols=41 Identities=32% Similarity=0.429 Sum_probs=35.1
Q ss_pred ceeeCCCCCCHHHHHHHHhhcccCCCceEEEcCeeCCCCChHHHhhcCeeeccccccccccchhccC
Q 037346 963 LVLRGRTGSGKSTLIQTLFRIVESTAGHILIDGKDISLIGLHDLRTRLSIIPQDPTMFEGTTRSNLD 1029 (1156)
Q Consensus 963 ~vL~G~SGsGKSTL~~lL~rl~~p~~G~I~idG~di~~i~~~~LR~~i~~VpQdp~LF~gTIr~Nl~ 1029 (1156)
++|.|++||||||+++.|.+.++ .+.+|+||+++|.+ +|+.
T Consensus 24 i~i~G~~GsGKSTl~~~L~~~~~-----------------------~~~~i~~D~~~~~~---~~~~ 64 (207)
T 2qt1_A 24 IGISGVTNSGKTTLAKNLQKHLP-----------------------NCSVISQDDFFKPE---SEIE 64 (207)
T ss_dssp EEEEESTTSSHHHHHHHHHTTST-----------------------TEEEEEGGGGBCCG---GGSC
T ss_pred EEEECCCCCCHHHHHHHHHHhcC-----------------------CcEEEeCCccccCH---hHhh
Confidence 57889999999999999999875 37899999999976 5554
|
| >1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20 | Back alignment and structure |
|---|
Probab=97.23 E-value=0.00066 Score=78.44 Aligned_cols=121 Identities=12% Similarity=0.139 Sum_probs=67.9
Q ss_pred CCe--EEEEEcCCCCChHHHHHHHhCCCCCCCcEEEEcCeEEEEecCCcCCCccHHHHhhcCCCCCHHHHHHHHHHhCCc
Q 037346 385 HGM--RVAVCGTVGSGKSSCLSCILGGVPKESGIIRLCGTKAYVAQSPWIQSGKIEENILFGKEMDRERYERVLEACSLK 462 (1156)
Q Consensus 385 ~g~--~~~ivG~~GsGKSTll~~i~g~~~~~~G~i~~~g~~~~v~Q~~~~~~~ti~eni~~~~~~~~~~~~~~~~~~~l~ 462 (1156)
.|. .+.|.||+|+|||||++.+.+.+.+..+ ..+.++...+.. +. ...+..+++..+..
T Consensus 41 ~~~~~~~li~G~~G~GKTtl~~~l~~~~~~~~~-----~~~~~i~~~~~~---~~-----------~~~~~~l~~~l~~~ 101 (389)
T 1fnn_A 41 GHHYPRATLLGRPGTGKTVTLRKLWELYKDKTT-----ARFVYINGFIYR---NF-----------TAIIGEIARSLNIP 101 (389)
T ss_dssp TSSCCEEEEECCTTSSHHHHHHHHHHHHTTSCC-----CEEEEEETTTCC---SH-----------HHHHHHHHHHTTCC
T ss_pred CCCCCeEEEECCCCCCHHHHHHHHHHHHhhhcC-----eeEEEEeCccCC---CH-----------HHHHHHHHHHhCcc
Confidence 456 8999999999999999999998876531 122333321110 10 12233333333211
Q ss_pred hhhhhCCCCCccccccCCCCCCHHHHHHHHHHHhh--ccCCCeeeeeCCCCCcCHHHHHHHHHHHHh--c---CCCEEEE
Q 037346 463 KDLEVLPFGDQTIIGERGINLSGGQKQRIQIARPL--YQDADIFLLDDPFSPVDDHTGAHLFKFCWV--S---SSKTVIY 535 (1156)
Q Consensus 463 ~~~~~~~~g~~t~v~~~g~~LSgGqkqRi~lAral--~~~~~illlDep~s~lD~~~~~~i~~~~~~--~---~~~tvi~ 535 (1156)
... ...+.++.... +...+ ..+|.++++||+... |......+.+.+.. . .+.++|+
T Consensus 102 -------------~~~--~~~~~~~~~~~-l~~~l~~~~~~~vlilDE~~~l-~~~~~~~L~~~~~~~~~~~~~~~~iI~ 164 (389)
T 1fnn_A 102 -------------FPR--RGLSRDEFLAL-LVEHLRERDLYMFLVLDDAFNL-APDILSTFIRLGQEADKLGAFRIALVI 164 (389)
T ss_dssp -------------CCS--SCCCHHHHHHH-HHHHHHHTTCCEEEEEETGGGS-CHHHHHHHHHHTTCHHHHSSCCEEEEE
T ss_pred -------------CCC--CCCCHHHHHHH-HHHHHhhcCCeEEEEEECcccc-chHHHHHHHHHHHhCCCCCcCCEEEEE
Confidence 001 11233332221 11111 245789999999876 88777766654422 2 3668888
Q ss_pred EccCCC
Q 037346 536 ATHQVE 541 (1156)
Q Consensus 536 vtH~~~ 541 (1156)
+||+.+
T Consensus 165 ~~~~~~ 170 (389)
T 1fnn_A 165 VGHNDA 170 (389)
T ss_dssp EESSTH
T ss_pred EECCch
Confidence 999874
|
| >1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A | Back alignment and structure |
|---|
Probab=97.22 E-value=5.8e-05 Score=84.86 Aligned_cols=45 Identities=16% Similarity=0.129 Sum_probs=39.4
Q ss_pred cccceEEeeCCeEEEEEcCCCCChHHHHHHHhCCCCCCCcEEEEc
Q 037346 376 LRNINLKVFHGMRVAVCGTVGSGKSSCLSCILGGVPKESGIIRLC 420 (1156)
Q Consensus 376 l~~i~l~i~~g~~~~ivG~~GsGKSTll~~i~g~~~~~~G~i~~~ 420 (1156)
+++++|++++|++++|+|++|+||||++..|++.+.+..|+|.+.
T Consensus 95 ~~~l~~~~~~~~vI~ivG~~G~GKTT~~~~LA~~l~~~g~kVlli 139 (320)
T 1zu4_A 95 KYRIDFKENRLNIFMLVGVNGTGKTTSLAKMANYYAELGYKVLIA 139 (320)
T ss_dssp -CCCCCCTTSCEEEEEESSTTSSHHHHHHHHHHHHHHTTCCEEEE
T ss_pred ccCccccCCCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEE
Confidence 467888899999999999999999999999999998877776653
|
| >3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans} | Back alignment and structure |
|---|
Probab=97.18 E-value=3e-05 Score=93.34 Aligned_cols=83 Identities=16% Similarity=0.299 Sum_probs=57.2
Q ss_pred CCCceeeCCCCCCHHHHHHHHhhcccCCCc-eEE-EcCeeCCC-------CCh---HHHhhcCeeeccccccccccchhc
Q 037346 960 NLPLVLRGRTGSGKSTLIQTLFRIVESTAG-HIL-IDGKDISL-------IGL---HDLRTRLSIIPQDPTMFEGTTRSN 1027 (1156)
Q Consensus 960 ~~~~vL~G~SGsGKSTL~~lL~rl~~p~~G-~I~-idG~di~~-------i~~---~~LR~~i~~VpQdp~LF~gTIr~N 1027 (1156)
+..++|.|+||||||||+++|.+.+.|.+| +|. +||.++.. ++. ...++++++|+|+. +..+|
T Consensus 369 G~iI~LiG~sGSGKSTLar~La~~L~~~~G~~i~~lDgD~~~~~l~~~l~f~~~~r~~~~r~i~~v~q~l-----~~~~~ 443 (552)
T 3cr8_A 369 GFTVFFTGLSGAGKSTLARALAARLMEMGGRCVTLLDGDIVRRHLSSELGFSKAHRDVNVRRIGFVASEI-----TKNRG 443 (552)
T ss_dssp CEEEEEEESSCHHHHHHHHHHHHHHHTTCSSCEEEESSHHHHHHTTSSCCCSHHHHHHHHHHHHHHHHHH-----HHTTC
T ss_pred ceEEEEECCCCChHHHHHHHHHHhhcccCCceEEEECCcHHHHhhccccCCCHHHHHHHHHHHHHHHHHH-----HhcCC
Confidence 344678999999999999999999999987 785 99977642 222 23456789999974 23444
Q ss_pred cCC---CCC--CCHHHHHHHHHHcC
Q 037346 1028 LDP---LEE--HADEQIWEALDKCQ 1047 (1156)
Q Consensus 1028 l~~---~~~--~~deei~~al~~~~ 1047 (1156)
+.. ..+ ...+++.++++..+
T Consensus 444 ivi~~~~~~~~~~r~~~r~lL~~~g 468 (552)
T 3cr8_A 444 IAICAPIAPYRQTRRDVRAMIEAVG 468 (552)
T ss_dssp EEEECCCCCCHHHHHHHHHHHHTTS
T ss_pred EEEEecCCccHHHHHHHHHHHHHcC
Confidence 321 111 12456778888776
|
| >1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A* | Back alignment and structure |
|---|
Probab=97.16 E-value=0.00012 Score=74.49 Aligned_cols=34 Identities=26% Similarity=0.228 Sum_probs=28.7
Q ss_pred eCCeEEEEEcCCCCChHHHHHHHhCCCCCCCcEEEEcC
Q 037346 384 FHGMRVAVCGTVGSGKSSCLSCILGGVPKESGIIRLCG 421 (1156)
Q Consensus 384 ~~g~~~~ivG~~GsGKSTll~~i~g~~~~~~G~i~~~g 421 (1156)
.+|++++|+|++||||||+++.|.+.+ |.+.+++
T Consensus 6 ~~g~~i~l~G~~GsGKSTl~~~l~~~~----g~~~i~~ 39 (175)
T 1knq_A 6 HDHHIYVLMGVSGSGKSAVASEVAHQL----HAAFLDG 39 (175)
T ss_dssp TTSEEEEEECSTTSCHHHHHHHHHHHH----TCEEEEG
T ss_pred CCCcEEEEEcCCCCCHHHHHHHHHHhh----CcEEEeC
Confidence 469999999999999999999999864 6666554
|
| >1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A | Back alignment and structure |
|---|
Probab=97.15 E-value=0.0013 Score=74.78 Aligned_cols=133 Identities=10% Similarity=0.146 Sum_probs=72.9
Q ss_pred EeeCCeEEEEEcCCCCChHHHHHHHhCC--CCCCCcEEEEcCeEEEEecCCcCCCccHHHHhhcCCCCCHHHHHHHHHHh
Q 037346 382 KVFHGMRVAVCGTVGSGKSSCLSCILGG--VPKESGIIRLCGTKAYVAQSPWIQSGKIEENILFGKEMDRERYERVLEAC 459 (1156)
Q Consensus 382 ~i~~g~~~~ivG~~GsGKSTll~~i~g~--~~~~~G~i~~~g~~~~v~Q~~~~~~~ti~eni~~~~~~~~~~~~~~~~~~ 459 (1156)
-+++|+++.|.||+|||||||+..++.. .++..|. .++.+.|+.-+.. ++.+++.+..+..
T Consensus 118 Gl~~G~i~~I~G~~GsGKTtla~~la~~~~~~~~~gg--~~~~vlyi~~E~~---------------~~~~~l~~~~~~~ 180 (343)
T 1v5w_A 118 GIESMAITEAFGEFRTGKTQLSHTLCVTAQLPGAGGY--PGGKIIFIDTENT---------------FRPDRLRDIADRF 180 (343)
T ss_dssp SBCSSEEEEEECCTTCTHHHHHHHHHHHTTSCBTTTB--CCCEEEEEESSSC---------------CCHHHHHHHHHHT
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHHHHhcccccCC--CCCeEEEEECCCC---------------CCHHHHHHHHHHc
Confidence 5889999999999999999999988875 3322111 1245566654432 1233333333333
Q ss_pred CCchh--hhhCCCCCccccccCCCCCCH-HHHHHHHHHHhhc----cCCCeeeeeCCCCCcCHH-------H-----HHH
Q 037346 460 SLKKD--LEVLPFGDQTIIGERGINLSG-GQKQRIQIARPLY----QDADIFLLDDPFSPVDDH-------T-----GAH 520 (1156)
Q Consensus 460 ~l~~~--~~~~~~g~~t~v~~~g~~LSg-GqkqRi~lAral~----~~~~illlDep~s~lD~~-------~-----~~~ 520 (1156)
+++.. ++.+ .+-. ..++ -+.+.+..++.+. .+++++++|++++-.+.. . ..+
T Consensus 181 g~~~~~~l~~l------~~~~---~~~~e~~~~ll~~l~~~i~~~~~~~~lvVIDsl~~l~~~~~~~~g~~~~r~~~l~~ 251 (343)
T 1v5w_A 181 NVDHDAVLDNV------LYAR---AYTSEHQMELLDYVAAKFHEEAGIFKLLIIDSIMALFRVDFSGRGELAERQQKLAQ 251 (343)
T ss_dssp TCCHHHHHHTE------EEEE---CCSTTHHHHHHHHHHHHHHHSCSSEEEEEEETSGGGHHHHCCGGGCHHHHHHHHHH
T ss_pred CCCHHHHHhce------eEee---cCCHHHHHHHHHHHHHHHHhcCCCccEEEEechHHHHHHHhcccccHHHHHHHHHH
Confidence 33211 1110 0000 1122 2335555555555 579999999999876442 1 112
Q ss_pred HHHHHH---hcCCCEEEEEccCC
Q 037346 521 LFKFCW---VSSSKTVIYATHQV 540 (1156)
Q Consensus 521 i~~~~~---~~~~~tvi~vtH~~ 540 (1156)
+...+. ...+.+||++.|-.
T Consensus 252 ~l~~L~~la~~~~~~Vi~~nq~~ 274 (343)
T 1v5w_A 252 MLSRLQKISEEYNVAVFVTNQMT 274 (343)
T ss_dssp HHHHHHHHHHHHTCEEEEEECC-
T ss_pred HHHHHHHHHHHhCCEEEEEeece
Confidence 222222 23577888888843
|
| >3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A | Back alignment and structure |
|---|
Probab=97.12 E-value=0.00043 Score=80.57 Aligned_cols=38 Identities=24% Similarity=0.273 Sum_probs=33.1
Q ss_pred ceeeCCCCCCHHHHHHHHhhcccCCCceEEEcCeeCCC
Q 037346 963 LVLRGRTGSGKSTLIQTLFRIVESTAGHILIDGKDISL 1000 (1156)
Q Consensus 963 ~vL~G~SGsGKSTL~~lL~rl~~p~~G~I~idG~di~~ 1000 (1156)
+++.|++||||||++..|.+.+.+..++|.+-+.|+..
T Consensus 100 I~lvG~~GsGKTTt~~kLA~~l~~~G~kVllv~~D~~r 137 (433)
T 3kl4_A 100 IMLVGVQGSGKTTTAGKLAYFYKKRGYKVGLVAADVYR 137 (433)
T ss_dssp EEECCCTTSCHHHHHHHHHHHHHHTTCCEEEEEECCSC
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEecCccc
Confidence 46779999999999999999999999999887777543
|
| >3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=97.10 E-value=0.00045 Score=77.29 Aligned_cols=31 Identities=19% Similarity=0.303 Sum_probs=25.6
Q ss_pred ceeeCCCCCCHHHHHHHHhhccc--CCCceEEE
Q 037346 963 LVLRGRTGSGKSTLIQTLFRIVE--STAGHILI 993 (1156)
Q Consensus 963 ~vL~G~SGsGKSTL~~lL~rl~~--p~~G~I~i 993 (1156)
++|.|+|||||||++++|.+++. |.+|.+.+
T Consensus 95 igI~GpsGSGKSTl~~~L~~ll~~~~~~~~v~~ 127 (321)
T 3tqc_A 95 IGIAGSVAVGKSTTSRVLKALLSRWPDHPNVEV 127 (321)
T ss_dssp EEEECCTTSSHHHHHHHHHHHHTTSTTCCCEEE
T ss_pred EEEECCCCCCHHHHHHHHHHHhcccCCCCeEEE
Confidence 46789999999999999999998 45666444
|
| >3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=97.09 E-value=0.0013 Score=73.18 Aligned_cols=76 Identities=14% Similarity=0.158 Sum_probs=52.7
Q ss_pred CCeEEEEEcCCCCChHHHHHHHhCCCCCCCcEEEEcCeEEEEecCCcCCCccHHHHhhcCCCCCHHHHHHHHHHhCCchh
Q 037346 385 HGMRVAVCGTVGSGKSSCLSCILGGVPKESGIIRLCGTKAYVAQSPWIQSGKIEENILFGKEMDRERYERVLEACSLKKD 464 (1156)
Q Consensus 385 ~g~~~~ivG~~GsGKSTll~~i~g~~~~~~G~i~~~g~~~~v~Q~~~~~~~ti~eni~~~~~~~~~~~~~~~~~~~l~~~ 464 (1156)
++.-+.|.||+|+||||+++++.+.+.. ...++.- +.+
T Consensus 53 ~~~~vll~Gp~GtGKT~la~~la~~~~~---------~~~~i~~-~~l-------------------------------- 90 (297)
T 3b9p_A 53 PAKGLLLFGPPGNGKTLLARAVATECSA---------TFLNISA-ASL-------------------------------- 90 (297)
T ss_dssp CCSEEEEESSSSSCHHHHHHHHHHHTTC---------EEEEEES-TTT--------------------------------
T ss_pred CCCeEEEECcCCCCHHHHHHHHHHHhCC---------CeEEeeH-HHH--------------------------------
Confidence 5678999999999999999999987531 1111100 000
Q ss_pred hhhCCCCCccccccCCCCCCHHHHHHHHHHHhhccCCCeeeeeCCCCCcCH
Q 037346 465 LEVLPFGDQTIIGERGINLSGGQKQRIQIARPLYQDADIFLLDDPFSPVDD 515 (1156)
Q Consensus 465 ~~~~~~g~~t~v~~~g~~LSgGqkqRi~lAral~~~~~illlDep~s~lD~ 515 (1156)
.. ..+ -+++++.|..+++|...+|.++++||+-+.++.
T Consensus 91 ~~-------~~~------~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~ 128 (297)
T 3b9p_A 91 TS-------KYV------GDGEKLVRALFAVARHMQPSIIFIDEVDSLLSE 128 (297)
T ss_dssp SS-------SSC------SCHHHHHHHHHHHHHHTCSEEEEEETGGGTSBC
T ss_pred hh-------ccc------chHHHHHHHHHHHHHHcCCcEEEeccHHHhccc
Confidence 00 001 146888888888888899999999999877653
|
| >3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans} | Back alignment and structure |
|---|
Probab=97.08 E-value=0.00011 Score=88.64 Aligned_cols=40 Identities=25% Similarity=0.389 Sum_probs=35.6
Q ss_pred EeeCCeEEEEEcCCCCChHHHHHHHhCCCCCCCc-EEE-EcC
Q 037346 382 KVFHGMRVAVCGTVGSGKSSCLSCILGGVPKESG-IIR-LCG 421 (1156)
Q Consensus 382 ~i~~g~~~~ivG~~GsGKSTll~~i~g~~~~~~G-~i~-~~g 421 (1156)
.+++|++++|+|+||||||||+++|+|.+.|++| ++. ++|
T Consensus 365 ~~~~G~iI~LiG~sGSGKSTLar~La~~L~~~~G~~i~~lDg 406 (552)
T 3cr8_A 365 RERQGFTVFFTGLSGAGKSTLARALAARLMEMGGRCVTLLDG 406 (552)
T ss_dssp GGGSCEEEEEEESSCHHHHHHHHHHHHHHHTTCSSCEEEESS
T ss_pred ccccceEEEEECCCCChHHHHHHHHHHhhcccCCceEEEECC
Confidence 5789999999999999999999999999999886 664 665
|
| >2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A* | Back alignment and structure |
|---|
Probab=97.07 E-value=0.0014 Score=73.96 Aligned_cols=133 Identities=17% Similarity=0.157 Sum_probs=74.6
Q ss_pred EeeCCeEEEEEcCCCCChHHHHHHHhCCCC-CC-CcEEEEcCeEEEEecCCcCCCccHHHHhhcCCCCCHHHHHHHHHHh
Q 037346 382 KVFHGMRVAVCGTVGSGKSSCLSCILGGVP-KE-SGIIRLCGTKAYVAQSPWIQSGKIEENILFGKEMDRERYERVLEAC 459 (1156)
Q Consensus 382 ~i~~g~~~~ivG~~GsGKSTll~~i~g~~~-~~-~G~i~~~g~~~~v~Q~~~~~~~ti~eni~~~~~~~~~~~~~~~~~~ 459 (1156)
-+++|+++.|.||+|||||||+..++.... +. .|. .++.+.|+.-+.. ++.++..+.++..
T Consensus 103 Gl~~G~i~~i~G~~GsGKT~la~~la~~~~~~~~~gg--~~~~vlyi~~e~~---------------~~~~~l~~~~~~~ 165 (324)
T 2z43_A 103 GIETRTMTEFFGEFGSGKTQLCHQLSVNVQLPPEKGG--LSGKAVYIDTEGT---------------FRWERIENMAKAL 165 (324)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTC--CSCEEEEEESSSC---------------CCHHHHHHHHHHT
T ss_pred CCCCCcEEEEECCCCCCHhHHHHHHHHHHhcccccCC--CCCeEEEEECCCC---------------CCHHHHHHHHHHh
Confidence 589999999999999999999998886542 21 110 1245566654422 2233333334444
Q ss_pred CCchh--hhhCCCCCccccccCCCCCCHH-HHHHHHHHHhhc---cCCCeeeeeCCCCCcCHH--------HH----HHH
Q 037346 460 SLKKD--LEVLPFGDQTIIGERGINLSGG-QKQRIQIARPLY---QDADIFLLDDPFSPVDDH--------TG----AHL 521 (1156)
Q Consensus 460 ~l~~~--~~~~~~g~~t~v~~~g~~LSgG-qkqRi~lAral~---~~~~illlDep~s~lD~~--------~~----~~i 521 (1156)
+.+.+ ++.+ .+.+ ..++. +.+.+..++.+. .+++++++|+.++-.+.. .+ .++
T Consensus 166 g~~~~~~~~~l------~~~~---~~~~~~~~~~l~~l~~~~~~~~~~~lvVIDsl~~l~~~~~~~~g~~~~r~~~~~~~ 236 (324)
T 2z43_A 166 GLDIDNVMNNI------YYIR---AINTDHQIAIVDDLQELVSKDPSIKLIVVDSVTSHFRAEYPGRENLAVRQQKLNKH 236 (324)
T ss_dssp TCCHHHHHHTE------EEEE---CCSHHHHHHHHHHHHHHHHHCTTEEEEEETTTTHHHHHHSCTTTSHHHHHHHHHHH
T ss_pred CCCHHHHhccE------EEEe---CCCHHHHHHHHHHHHHHHHhccCCCEEEEeCcHHHhhhhhcCcccHHHHHHHHHHH
Confidence 33211 1100 0111 12333 346677777777 679999999998876431 11 122
Q ss_pred HHHHH---hcCCCEEEEEccCC
Q 037346 522 FKFCW---VSSSKTVIYATHQV 540 (1156)
Q Consensus 522 ~~~~~---~~~~~tvi~vtH~~ 540 (1156)
...+. ...+.+||++.|-.
T Consensus 237 l~~L~~la~~~~~~Vi~~nq~~ 258 (324)
T 2z43_A 237 LHQLTRLAEVYDIAVIITNQVM 258 (324)
T ss_dssp HHHHHHHHHHHTCEEEEEEEC-
T ss_pred HHHHHHHHHHhCCEEEEEccee
Confidence 22221 13478888887743
|
| >2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A | Back alignment and structure |
|---|
Probab=97.07 E-value=0.00019 Score=82.27 Aligned_cols=128 Identities=22% Similarity=0.257 Sum_probs=72.7
Q ss_pred CCC-ceeeCCCCCCHHHHHHHHhhccc-----------CCCceEEEcCeeCCCCChHHHhhcCeeecccccc----cccc
Q 037346 960 NLP-LVLRGRTGSGKSTLIQTLFRIVE-----------STAGHILIDGKDISLIGLHDLRTRLSIIPQDPTM----FEGT 1023 (1156)
Q Consensus 960 ~~~-~vL~G~SGsGKSTL~~lL~rl~~-----------p~~G~I~idG~di~~i~~~~LR~~i~~VpQdp~L----F~gT 1023 (1156)
+.+ ++|.|++|||||||++.|.+... |..|.|.++|.++. +-...|++.|.|.- |..|
T Consensus 178 ~~~~V~lvG~~naGKSTLln~L~~~~~~~~~~~~~T~d~~~~~i~~~g~~v~------l~DT~G~i~~lp~~lve~f~~t 251 (364)
T 2qtf_A 178 NIPSIGIVGYTNSGKTSLFNSLTGLTQKVDTKLFTTMSPKRYAIPINNRKIM------LVDTVGFIRGIPPQIVDAFFVT 251 (364)
T ss_dssp -CCEEEEECBTTSSHHHHHHHHHCC-----------CCSCEEEEEETTEEEE------EEECCCBCSSCCGGGHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHCCCccccCCcccccCCEEEEEEECCEEEE------EEeCCCchhcCCHHHHHHHHHH
Confidence 345 67999999999999999999765 67899999997652 23345666664421 3223
Q ss_pred ch-----hcc----CCCCCC--CHHH---HHHHHHHcCCChH--------HHhhcCCccc---cc----ccc-ccCCCEE
Q 037346 1024 TR-----SNL----DPLEEH--ADEQ---IWEALDKCQLGDE--------VRKKKGKLDS---QG----RVL-LKKSKVL 1073 (1156)
Q Consensus 1024 Ir-----~Nl----~~~~~~--~dee---i~~al~~~~l~~~--------i~~lp~gl~s---~A----RAL-Lr~~~IL 1073 (1156)
+. +++ |..++. .+++ +.+.++..++.+. ++.++.+... .+ +++ ..++++
T Consensus 252 l~~~~~aD~il~VvD~s~~~~~~~~~~~~~~~~L~~l~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~l~~~l~~~~~~~- 330 (364)
T 2qtf_A 252 LSEAKYSDALILVIDSTFSENLLIETLQSSFEILREIGVSGKPILVTLNKIDKINGDLYKKLDLVEKLSKELYSPIFDV- 330 (364)
T ss_dssp HHGGGGSSEEEEEEETTSCHHHHHHHHHHHHHHHHHHTCCSCCEEEEEECGGGCCSCHHHHHHHHHHHHHHHCSCEEEE-
T ss_pred HHHHHhCCEEEEEEECCCCcchHHHHHHHHHHHHHHhCcCCCCEEEEEECCCCCCchHHHHHHHHHHHHHHhcCCCCcE-
Confidence 22 121 222222 1222 3556666554321 1111111100 01 344 333444
Q ss_pred EEecCCcCCCHHHHHHHHHHHHHh
Q 037346 1074 VLDEATASVDTATDNQIQQTLRQH 1097 (1156)
Q Consensus 1074 iLDEaTS~LD~~te~~I~~~l~~~ 1097 (1156)
+|||++|.+.-..+.+.|.+.
T Consensus 331 ---~~~SA~~g~gi~~L~~~I~~~ 351 (364)
T 2qtf_A 331 ---IPISALKRTNLELLRDKIYQL 351 (364)
T ss_dssp ---EECBTTTTBSHHHHHHHHHHH
T ss_pred ---EEEECCCCcCHHHHHHHHHHH
Confidence 899999999888888887664
|
| >1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A | Back alignment and structure |
|---|
Probab=97.06 E-value=6.7e-05 Score=84.35 Aligned_cols=58 Identities=17% Similarity=0.283 Sum_probs=45.0
Q ss_pred CCCCceeeCCCCCCHHHHHHHHhhcccCCCceEEEcCeeCCCCCh----HHH-----hhcCeee-ccc
Q 037346 959 PNLPLVLRGRTGSGKSTLIQTLFRIVESTAGHILIDGKDISLIGL----HDL-----RTRLSII-PQD 1016 (1156)
Q Consensus 959 ~~~~~vL~G~SGsGKSTL~~lL~rl~~p~~G~I~idG~di~~i~~----~~L-----R~~i~~V-pQd 1016 (1156)
++..+++.|++|+||||++..|.+.+.+.+|+|.+.+.|+..... ..+ |..+.++ +|.
T Consensus 104 ~~~vI~ivG~~G~GKTT~~~~LA~~l~~~g~kVllid~D~~r~~a~~ql~~~~~~~~~~~l~vip~~~ 171 (320)
T 1zu4_A 104 RLNIFMLVGVNGTGKTTSLAKMANYYAELGYKVLIAAADTFRAGATQQLEEWIKTRLNNKVDLVKANK 171 (320)
T ss_dssp SCEEEEEESSTTSSHHHHHHHHHHHHHHTTCCEEEEECCCSCHHHHHHHHHHHTTTSCTTEEEECCSS
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCcchhHHHHHHHHHhccccCCceEEeCCC
Confidence 334457889999999999999999999999999999999866442 334 4567777 454
|
| >1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20 | Back alignment and structure |
|---|
Probab=97.06 E-value=0.00067 Score=78.36 Aligned_cols=115 Identities=17% Similarity=0.256 Sum_probs=65.4
Q ss_pred ceeeCCCCCCHHHHHHHHhhcccCCC--ceEEEcCeeCCCCChHHHhhcCeeeccccccccccchhccC---CCCCCCHH
Q 037346 963 LVLRGRTGSGKSTLIQTLFRIVESTA--GHILIDGKDISLIGLHDLRTRLSIIPQDPTMFEGTTRSNLD---PLEEHADE 1037 (1156)
Q Consensus 963 ~vL~G~SGsGKSTL~~lL~rl~~p~~--G~I~idG~di~~i~~~~LR~~i~~VpQdp~LF~gTIr~Nl~---~~~~~~de 1037 (1156)
+.|.|++|+|||||++.+.+...+.. .-+.++..+.. +...+-+.+ .+.+. +....+.+
T Consensus 47 ~li~G~~G~GKTtl~~~l~~~~~~~~~~~~~~i~~~~~~--~~~~~~~~l--------------~~~l~~~~~~~~~~~~ 110 (389)
T 1fnn_A 47 ATLLGRPGTGKTVTLRKLWELYKDKTTARFVYINGFIYR--NFTAIIGEI--------------ARSLNIPFPRRGLSRD 110 (389)
T ss_dssp EEEECCTTSSHHHHHHHHHHHHTTSCCCEEEEEETTTCC--SHHHHHHHH--------------HHHTTCCCCSSCCCHH
T ss_pred EEEECCCCCCHHHHHHHHHHHHhhhcCeeEEEEeCccCC--CHHHHHHHH--------------HHHhCccCCCCCCCHH
Confidence 57889999999999999999987653 34555532221 111111111 00010 11112233
Q ss_pred HHHHHHHHcCCChHHHhhcCCccccccccccCCCEEEEecCCcCCCHHHHHHHHHHHHHhc----CCceEEEeecCcc
Q 037346 1038 QIWEALDKCQLGDEVRKKKGKLDSQGRVLLKKSKVLVLDEATASVDTATDNQIQQTLRQHF----SDCTVVTIAHRIT 1111 (1156)
Q Consensus 1038 ei~~al~~~~l~~~i~~lp~gl~s~ARALLr~~~ILiLDEaTS~LD~~te~~I~~~l~~~~----~~~TvI~IaHrl~ 1111 (1156)
++.+.+.. .+.. ..+|.||+|||+... |......+.+.+.+.. .+.++|+++|+..
T Consensus 111 ~~~~~l~~-----~l~~------------~~~~~vlilDE~~~l-~~~~~~~L~~~~~~~~~~~~~~~~iI~~~~~~~ 170 (389)
T 1fnn_A 111 EFLALLVE-----HLRE------------RDLYMFLVLDDAFNL-APDILSTFIRLGQEADKLGAFRIALVIVGHNDA 170 (389)
T ss_dssp HHHHHHHH-----HHHH------------TTCCEEEEEETGGGS-CHHHHHHHHHHTTCHHHHSSCCEEEEEEESSTH
T ss_pred HHHHHHHH-----HHhh------------cCCeEEEEEECcccc-chHHHHHHHHHHHhCCCCCcCCEEEEEEECCch
Confidence 33332211 1110 235789999999876 8777666666664432 3678899999874
|
| >1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A* | Back alignment and structure |
|---|
Probab=96.97 E-value=0.00022 Score=72.58 Aligned_cols=51 Identities=22% Similarity=0.262 Sum_probs=38.5
Q ss_pred CceeeCCCCCCHHHHHHHHhhcccCCCceEEEcCeeCCCCChHHHhh-cCeeeccccc
Q 037346 962 PLVLRGRTGSGKSTLIQTLFRIVESTAGHILIDGKDISLIGLHDLRT-RLSIIPQDPT 1018 (1156)
Q Consensus 962 ~~vL~G~SGsGKSTL~~lL~rl~~p~~G~I~idG~di~~i~~~~LR~-~i~~VpQdp~ 1018 (1156)
.++|.|++||||||+++.|.+.+ |.+.+|+.++.. ...+++ .+++++|++.
T Consensus 10 ~i~l~G~~GsGKSTl~~~l~~~~----g~~~i~~d~~~~--~~~~~~~~~g~~~~~~~ 61 (175)
T 1knq_A 10 IYVLMGVSGSGKSAVASEVAHQL----HAAFLDGDFLHP--RRNIEKMASGEPLNDDD 61 (175)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHH----TCEEEEGGGGCC--HHHHHHHHTTCCCCHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHhh----CcEEEeCccccc--hHHHHHhhcCcCCCccc
Confidence 35788999999999999999976 889999877753 223333 4677777643
|
| >1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A* | Back alignment and structure |
|---|
Probab=96.97 E-value=2.7e-05 Score=84.83 Aligned_cols=65 Identities=17% Similarity=0.136 Sum_probs=51.8
Q ss_pred ceeeCCCCCCHHHHHHHHhhcccCCCceEEEcCeeCCCCChHHHhhcCeeeccccc-cc-cccchhccC
Q 037346 963 LVLRGRTGSGKSTLIQTLFRIVESTAGHILIDGKDISLIGLHDLRTRLSIIPQDPT-MF-EGTTRSNLD 1029 (1156)
Q Consensus 963 ~vL~G~SGsGKSTL~~lL~rl~~p~~G~I~idG~di~~i~~~~LR~~i~~VpQdp~-LF-~gTIr~Nl~ 1029 (1156)
+.|.||+|||||||+++|.+... .|.|.++|.++.+......++.++.++|++. .+ .-++.||++
T Consensus 52 ~ll~G~~G~GKTtl~~~i~~~~~--~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~i~~~Deid 118 (254)
T 1ixz_A 52 VLLVGPPGVGKTHLARAVAGEAR--VPFITASGSDFVEMFVGVGAARVRDLFETAKRHAPCIVFIDEID 118 (254)
T ss_dssp EEEECCTTSSHHHHHHHHHHHTT--CCEEEEEHHHHHHSCTTHHHHHHHHHHHHHTTSSSEEEEEETHH
T ss_pred EEEECCCCCCHHHHHHHHHHHhC--CCEEEeeHHHHHHHHhhHHHHHHHHHHHHHHhcCCeEEEehhhh
Confidence 67889999999999999999875 8999999988766666666777888888864 33 235677774
|
| >1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A | Back alignment and structure |
|---|
Probab=96.95 E-value=0.0002 Score=81.52 Aligned_cols=130 Identities=18% Similarity=0.171 Sum_probs=70.0
Q ss_pred CCCCceeeCCCCCCHHHHHHHHhhcc-cC------CCceEEEcCeeCCCCChHHHhh---cCeeeccccccccccchhcc
Q 037346 959 PNLPLVLRGRTGSGKSTLIQTLFRIV-ES------TAGHILIDGKDISLIGLHDLRT---RLSIIPQDPTMFEGTTRSNL 1028 (1156)
Q Consensus 959 ~~~~~vL~G~SGsGKSTL~~lL~rl~-~p------~~G~I~idG~di~~i~~~~LR~---~i~~VpQdp~LF~gTIr~Nl 1028 (1156)
++.-+.|.|++|||||||+..++.-. .| ..+.++||.... ++.+.+++ ++++-++ .+.+|+
T Consensus 121 ~G~i~~I~G~~GsGKTtla~~la~~~~~~~~~gg~~~~vlyi~~E~~--~~~~~l~~~~~~~g~~~~-------~~l~~l 191 (343)
T 1v5w_A 121 SMAITEAFGEFRTGKTQLSHTLCVTAQLPGAGGYPGGKIIFIDTENT--FRPDRLRDIADRFNVDHD-------AVLDNV 191 (343)
T ss_dssp SSEEEEEECCTTCTHHHHHHHHHHHTTSCBTTTBCCCEEEEEESSSC--CCHHHHHHHHHHTTCCHH-------HHHHTE
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCeEEEEECCCC--CCHHHHHHHHHHcCCCHH-------HHHhce
Confidence 34445678999999999999888752 22 345678887652 33444433 3443222 123455
Q ss_pred CCCCCCCHHHHHHHHHHcCCChHHHhhcCCccccccccccCCCEEEEecCCcCCCHH-------HH--HHHHHH---HHH
Q 037346 1029 DPLEEHADEQIWEALDKCQLGDEVRKKKGKLDSQGRVLLKKSKVLVLDEATASVDTA-------TD--NQIQQT---LRQ 1096 (1156)
Q Consensus 1029 ~~~~~~~deei~~al~~~~l~~~i~~lp~gl~s~ARALLr~~~ILiLDEaTS~LD~~-------te--~~I~~~---l~~ 1096 (1156)
......+-+++.+.++.+ ...+.+ ...+++++|+|+.|+-.+.+ .+ ..+.+. |.+
T Consensus 192 ~~~~~~~~e~~~~ll~~l--~~~i~~-----------~~~~~~lvVIDsl~~l~~~~~~~~g~~~~r~~~l~~~l~~L~~ 258 (343)
T 1v5w_A 192 LYARAYTSEHQMELLDYV--AAKFHE-----------EAGIFKLLIIDSIMALFRVDFSGRGELAERQQKLAQMLSRLQK 258 (343)
T ss_dssp EEEECCSTTHHHHHHHHH--HHHHHH-----------SCSSEEEEEEETSGGGHHHHCCGGGCHHHHHHHHHHHHHHHHH
T ss_pred eEeecCCHHHHHHHHHHH--HHHHHh-----------cCCCccEEEEechHHHHHHHhcccccHHHHHHHHHHHHHHHHH
Confidence 333333323333332211 111211 11468999999999876543 11 123333 333
Q ss_pred hc--CCceEEEeecCc
Q 037346 1097 HF--SDCTVVTIAHRI 1110 (1156)
Q Consensus 1097 ~~--~~~TvI~IaHrl 1110 (1156)
.. .++|||++.|--
T Consensus 259 la~~~~~~Vi~~nq~~ 274 (343)
T 1v5w_A 259 ISEEYNVAVFVTNQMT 274 (343)
T ss_dssp HHHHHTCEEEEEECC-
T ss_pred HHHHhCCEEEEEeece
Confidence 22 378999999853
|
| >3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.93 E-value=0.0037 Score=66.95 Aligned_cols=28 Identities=39% Similarity=0.587 Sum_probs=24.3
Q ss_pred EEEEEcCCCCChHHHHHHHhCCCCCCCc
Q 037346 388 RVAVCGTVGSGKSSCLSCILGGVPKESG 415 (1156)
Q Consensus 388 ~~~ivG~~GsGKSTll~~i~g~~~~~~G 415 (1156)
.++|+|++|+|||||++.|+|...+.+|
T Consensus 31 ~i~lvG~~g~GKStlin~l~g~~~~~~~ 58 (239)
T 3lxx_A 31 RIVLVGKTGAGKSATGNSILGRKVFHSG 58 (239)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSCCSCC-
T ss_pred EEEEECCCCCCHHHHHHHHcCCCcCccC
Confidence 5899999999999999999998776555
|
| >3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A | Back alignment and structure |
|---|
Probab=96.92 E-value=0.0014 Score=76.19 Aligned_cols=107 Identities=11% Similarity=0.035 Sum_probs=61.4
Q ss_pred CCeEEEEEcCCCCChHHHHHHHhCCCCCCCcEEEEcCeEEEEecCCcCCCccHHHHhhcCCCCCHHHHHHHHHHhCCchh
Q 037346 385 HGMRVAVCGTVGSGKSSCLSCILGGVPKESGIIRLCGTKAYVAQSPWIQSGKIEENILFGKEMDRERYERVLEACSLKKD 464 (1156)
Q Consensus 385 ~g~~~~ivG~~GsGKSTll~~i~g~~~~~~G~i~~~g~~~~v~Q~~~~~~~ti~eni~~~~~~~~~~~~~~~~~~~l~~~ 464 (1156)
++.+++++|++||||||++..|++.+.+..++|. ++.-++. .....+ ......+..++..
T Consensus 96 ~~~vI~lvG~~GsGKTTt~~kLA~~l~~~G~kVl------lv~~D~~--r~~a~e-----------qL~~~~~~~gv~~- 155 (433)
T 3kl4_A 96 LPFIIMLVGVQGSGKTTTAGKLAYFYKKRGYKVG------LVAADVY--RPAAYD-----------QLLQLGNQIGVQV- 155 (433)
T ss_dssp SSEEEEECCCTTSCHHHHHHHHHHHHHHTTCCEE------EEEECCS--CHHHHH-----------HHHHHHHTTTCCE-
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEE------EEecCcc--chhHHH-----------HHHHHHHhcCCce-
Confidence 5789999999999999999999998877655554 3333321 111111 1111111112110
Q ss_pred hhhCCCCCccccccCCCCCCHHHHHHHHHHHhhccCCCeeeeeCCC-CC--cCHHHHHHHHH
Q 037346 465 LEVLPFGDQTIIGERGINLSGGQKQRIQIARPLYQDADIFLLDDPF-SP--VDDHTGAHLFK 523 (1156)
Q Consensus 465 ~~~~~~g~~t~v~~~g~~LSgGqkqRi~lAral~~~~~illlDep~-s~--lD~~~~~~i~~ 523 (1156)
.... .....-.-.+-+++++...++|++|+|+|- .+ .|+....++.+
T Consensus 156 ----------~~~~--~~~dp~~i~~~al~~a~~~~~DvvIIDTaGr~~~~~d~~lm~el~~ 205 (433)
T 3kl4_A 156 ----------YGEP--NNQNPIEIAKKGVDIFVKNKMDIIIVDTAGRHGYGEETKLLEEMKE 205 (433)
T ss_dssp ----------ECCT--TCSCHHHHHHHHHHHTTTTTCSEEEEEECCCSSSCCTTHHHHHHHH
T ss_pred ----------eecc--ccCCHHHHHHHHHHHHHhcCCCEEEEECCCCccccCCHHHHHHHHH
Confidence 0000 111222333456777777899999999986 44 67765555543
|
| >1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A* | Back alignment and structure |
|---|
Probab=96.92 E-value=0.00047 Score=68.36 Aligned_cols=30 Identities=37% Similarity=0.458 Sum_probs=25.0
Q ss_pred ccceEEeeCCeEEEEEcCCCCChHHHHHHHh
Q 037346 377 RNINLKVFHGMRVAVCGTVGSGKSSCLSCIL 407 (1156)
Q Consensus 377 ~~i~l~i~~g~~~~ivG~~GsGKSTll~~i~ 407 (1156)
++..+++.+| +++|+|||||||||++.+|.
T Consensus 15 ~~~~i~f~~g-~~~I~G~NGsGKStil~Ai~ 44 (149)
T 1f2t_A 15 SDTVVEFKEG-INLIIGQNGSGKSSLLDAIL 44 (149)
T ss_dssp SSEEEECCSE-EEEEECCTTSSHHHHHHHHH
T ss_pred cceEEEcCCC-eEEEECCCCCCHHHHHHHHH
Confidence 4456666655 99999999999999999986
|
| >1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20 | Back alignment and structure |
|---|
Probab=96.86 E-value=0.0007 Score=76.98 Aligned_cols=103 Identities=18% Similarity=0.299 Sum_probs=59.4
Q ss_pred ceeeCCCCCCHHHHHHHHhhcccCCCceEEEcCeeCCCCChHHHhhcCeeeccccccccccchhccCCCCCCCHHHHHHH
Q 037346 963 LVLRGRTGSGKSTLIQTLFRIVESTAGHILIDGKDISLIGLHDLRTRLSIIPQDPTMFEGTTRSNLDPLEEHADEQIWEA 1042 (1156)
Q Consensus 963 ~vL~G~SGsGKSTL~~lL~rl~~p~~G~I~idG~di~~i~~~~LR~~i~~VpQdp~LF~gTIr~Nl~~~~~~~deei~~a 1042 (1156)
+.|.||+|+||||+++++.+...+..|.+.+.+.+.++ ...-+++.+.
T Consensus 49 ~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~--------------------------------~~~~~~ir~~ 96 (340)
T 1sxj_C 49 LLFYGPPGTGKTSTIVALAREIYGKNYSNMVLELNASD--------------------------------DRGIDVVRNQ 96 (340)
T ss_dssp EEEECSSSSSHHHHHHHHHHHHHTTSHHHHEEEECTTS--------------------------------CCSHHHHHTH
T ss_pred EEEECCCCCCHHHHHHHHHHHHcCCCccceEEEEcCcc--------------------------------cccHHHHHHH
Confidence 57889999999999999999987665543222221111 1112233322
Q ss_pred HHHcCCChHHHhhcCCccccccccccCCCEEEEecCCcCCCHHHHHHHHHHHHHhcCCceEEEeecCcc
Q 037346 1043 LDKCQLGDEVRKKKGKLDSQGRVLLKKSKVLVLDEATASVDTATDNQIQQTLRQHFSDCTVVTIAHRIT 1111 (1156)
Q Consensus 1043 l~~~~l~~~i~~lp~gl~s~ARALLr~~~ILiLDEaTS~LD~~te~~I~~~l~~~~~~~TvI~IaHrl~ 1111 (1156)
++ ++.+.. ..+-.+++|+++||+- .+..+....+.+.+++...++.+|+++....
T Consensus 97 i~-----~~~~~~--------~~~~~~~~viiiDe~~-~l~~~~~~~L~~~le~~~~~~~~il~~n~~~ 151 (340)
T 1sxj_C 97 IK-----DFASTR--------QIFSKGFKLIILDEAD-AMTNAAQNALRRVIERYTKNTRFCVLANYAH 151 (340)
T ss_dssp HH-----HHHHBC--------CSSSCSCEEEEETTGG-GSCHHHHHHHHHHHHHTTTTEEEEEEESCGG
T ss_pred HH-----HHHhhc--------ccCCCCceEEEEeCCC-CCCHHHHHHHHHHHhcCCCCeEEEEEecCcc
Confidence 21 111110 0111357999999985 3455666667777776555555666666543
|
| >2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus} | Back alignment and structure |
|---|
Probab=96.85 E-value=0.00066 Score=78.15 Aligned_cols=30 Identities=20% Similarity=0.390 Sum_probs=26.2
Q ss_pred eCCeEEEEEcCCCCChHHHHHHHhCCCCCC
Q 037346 384 FHGMRVAVCGTVGSGKSSCLSCILGGVPKE 413 (1156)
Q Consensus 384 ~~g~~~~ivG~~GsGKSTll~~i~g~~~~~ 413 (1156)
..+..+.|.||+|+|||||++.+.+.+.+.
T Consensus 43 ~~~~~vli~G~~G~GKTtl~~~l~~~~~~~ 72 (386)
T 2qby_A 43 EKPNNIFIYGLTGTGKTAVVKFVLSKLHKK 72 (386)
T ss_dssp CCCCCEEEEECTTSSHHHHHHHHHHHHHHH
T ss_pred CCCCeEEEECCCCCCHHHHHHHHHHHHHHH
Confidence 457899999999999999999999887554
|
| >1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2 | Back alignment and structure |
|---|
Probab=96.81 E-value=0.0004 Score=70.44 Aligned_cols=28 Identities=18% Similarity=0.252 Sum_probs=25.0
Q ss_pred CCeEEEEEcCCCCChHHHHHHHhCCCCC
Q 037346 385 HGMRVAVCGTVGSGKSSCLSCILGGVPK 412 (1156)
Q Consensus 385 ~g~~~~ivG~~GsGKSTll~~i~g~~~~ 412 (1156)
.|++++|+|++||||||+++.|.+.+.+
T Consensus 3 ~~~~i~l~G~~GsGKSTl~~~La~~l~~ 30 (173)
T 1kag_A 3 EKRNIFLVGPMGAGKSTIGRQLAQQLNM 30 (173)
T ss_dssp CCCCEEEECCTTSCHHHHHHHHHHHTTC
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHhCC
Confidence 4678999999999999999999997653
|
| >2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10 | Back alignment and structure |
|---|
Probab=96.79 E-value=0.00021 Score=81.36 Aligned_cols=45 Identities=27% Similarity=0.223 Sum_probs=39.8
Q ss_pred CccccceEEeeCCeEEEEEcCCCCChHHHHHHHhCCCCCCCcEEE
Q 037346 374 PTLRNINLKVFHGMRVAVCGTVGSGKSSCLSCILGGVPKESGIIR 418 (1156)
Q Consensus 374 ~~l~~i~l~i~~g~~~~ivG~~GsGKSTll~~i~g~~~~~~G~i~ 418 (1156)
.+++++++.+++|.+++|+|++|+|||||++.|+|.+.+..|++.
T Consensus 44 ~~~~~l~~~~~~~~~i~i~G~~g~GKSTl~~~l~~~~~~~~~~v~ 88 (341)
T 2p67_A 44 QLLDAIMPYCGNTLRLGVTGTPGAGKSTFLEAFGMLLIREGLKVA 88 (341)
T ss_dssp HHHHHHGGGCSCSEEEEEEECTTSCHHHHHHHHHHHHHHTTCCEE
T ss_pred HHHHhCCcccCCCEEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEE
Confidence 578899999999999999999999999999999999877665543
|
| >1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6 | Back alignment and structure |
|---|
Probab=96.79 E-value=0.00035 Score=73.06 Aligned_cols=42 Identities=21% Similarity=0.228 Sum_probs=35.8
Q ss_pred ceeeCCCCCCHHHHHHHHhhcccCCCceEEEcCeeCCCCChH
Q 037346 963 LVLRGRTGSGKSTLIQTLFRIVESTAGHILIDGKDISLIGLH 1004 (1156)
Q Consensus 963 ~vL~G~SGsGKSTL~~lL~rl~~p~~G~I~idG~di~~i~~~ 1004 (1156)
++|.|++||||||+++.|.+++.+.+|.|.+.|.|....+..
T Consensus 25 i~i~G~~GsGKstl~~~l~~~~~~~~~~v~~~~~d~~~~~~~ 66 (201)
T 1rz3_A 25 LGIDGLSRSGKTTLANQLSQTLREQGISVCVFHMDDHIVERA 66 (201)
T ss_dssp EEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEEGGGGCCCHH
T ss_pred EEEECCCCCCHHHHHHHHHHHHhhcCCeEEEeccCcccCCHH
Confidence 578899999999999999999999999998887776555443
|
| >1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A* | Back alignment and structure |
|---|
Probab=96.75 E-value=0.0013 Score=74.06 Aligned_cols=101 Identities=17% Similarity=0.244 Sum_probs=57.9
Q ss_pred CCceeeCCCCCCHHHHHHHHhhcccCCCceEEEcCeeCCCCChHHHhhcCeeeccccccccccchhccCCCCCCCHHHHH
Q 037346 961 LPLVLRGRTGSGKSTLIQTLFRIVESTAGHILIDGKDISLIGLHDLRTRLSIIPQDPTMFEGTTRSNLDPLEEHADEQIW 1040 (1156)
Q Consensus 961 ~~~vL~G~SGsGKSTL~~lL~rl~~p~~G~I~idG~di~~i~~~~LR~~i~~VpQdp~LF~gTIr~Nl~~~~~~~deei~ 1040 (1156)
.++.|.|++|+|||||++++.+........+ .+++-+. . .+++.
T Consensus 38 ~~lll~G~~GtGKT~la~~i~~~~~~~~~~~-------------------~~i~~~~------~-----------~~~~~ 81 (324)
T 1l8q_A 38 NPIFIYGSVGTGKTHLLQAAGNEAKKRGYRV-------------------IYSSADD------F-----------AQAMV 81 (324)
T ss_dssp SSEEEECSSSSSHHHHHHHHHHHHHHTTCCE-------------------EEEEHHH------H-----------HHHHH
T ss_pred CeEEEECCCCCcHHHHHHHHHHHHHHCCCEE-------------------EEEEHHH------H-----------HHHHH
Confidence 3567889999999999999998775432221 1111000 0 12233
Q ss_pred HHHHHcCCChHHHhhcCCccccccccccCCCEEEEecCCcC-CCHHHHHHHHHHHHHhc-CCceEEEeecC
Q 037346 1041 EALDKCQLGDEVRKKKGKLDSQGRVLLKKSKVLVLDEATAS-VDTATDNQIQQTLRQHF-SDCTVVTIAHR 1109 (1156)
Q Consensus 1041 ~al~~~~l~~~i~~lp~gl~s~ARALLr~~~ILiLDEaTS~-LD~~te~~I~~~l~~~~-~~~TvI~IaHr 1109 (1156)
.+++......+. ..++++.+|++||+..- -|..+...+...+.... .++.+|+.+++
T Consensus 82 ~~~~~~~~~~~~------------~~~~~~~vL~iDEi~~l~~~~~~~~~l~~~l~~~~~~~~~iii~~~~ 140 (324)
T 1l8q_A 82 EHLKKGTINEFR------------NMYKSVDLLLLDDVQFLSGKERTQIEFFHIFNTLYLLEKQIILASDR 140 (324)
T ss_dssp HHHHHTCHHHHH------------HHHHTCSEEEEECGGGGTTCHHHHHHHHHHHHHHHHTTCEEEEEESS
T ss_pred HHHHcCcHHHHH------------HHhcCCCEEEEcCcccccCChHHHHHHHHHHHHHHHCCCeEEEEecC
Confidence 333322222221 12356899999999763 34466667777776543 35566666654
|
| >2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A* | Back alignment and structure |
|---|
Probab=96.75 E-value=0.00061 Score=80.29 Aligned_cols=41 Identities=22% Similarity=0.303 Sum_probs=30.0
Q ss_pred CCCeeeeeCCCCCcCH-HHHHHHHHHHH--hcCCCEEEEEccCC
Q 037346 500 DADIFLLDDPFSPVDD-HTGAHLFKFCW--VSSSKTVIYATHQV 540 (1156)
Q Consensus 500 ~~~illlDep~s~lD~-~~~~~i~~~~~--~~~~~tvi~vtH~~ 540 (1156)
++++|++||+..-.+. .+++.++..+. ...|+.+|++||+.
T Consensus 194 ~~~vL~IDEi~~l~~~~~~q~~l~~~l~~l~~~~~~iIitt~~~ 237 (440)
T 2z4s_A 194 KVDILLIDDVQFLIGKTGVQTELFHTFNELHDSGKQIVICSDRE 237 (440)
T ss_dssp TCSEEEEECGGGGSSCHHHHHHHHHHHHHHHTTTCEEEEEESSC
T ss_pred CCCEEEEeCcccccCChHHHHHHHHHHHHHHHCCCeEEEEECCC
Confidence 8999999999877764 45555655432 24578899999974
|
| >1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A* | Back alignment and structure |
|---|
Probab=96.72 E-value=0.0014 Score=69.76 Aligned_cols=45 Identities=16% Similarity=0.191 Sum_probs=34.5
Q ss_pred cCCCEEEEecCCcCCCHHHHHHHHHHHHHhcCCceEEEeecCcccc
Q 037346 1068 KKSKVLVLDEATASVDTATDNQIQQTLRQHFSDCTVVTIAHRITSV 1113 (1156)
Q Consensus 1068 r~~~ILiLDEaTS~LD~~te~~I~~~l~~~~~~~TvI~IaHrl~ti 1113 (1156)
.++.+|++||+-. +|.+....+.+.+.+...+..+|+++++...+
T Consensus 125 ~~~~vlviDe~~~-l~~~~~~~l~~~l~~~~~~~~~i~~t~~~~~~ 169 (250)
T 1njg_A 125 GRFKVYLIDEVHM-LSRHSFNALLKTLEEPPEHVKFLLATTDPQKL 169 (250)
T ss_dssp SSSEEEEEETGGG-SCHHHHHHHHHHHHSCCTTEEEEEEESCGGGS
T ss_pred CCceEEEEECccc-ccHHHHHHHHHHHhcCCCceEEEEEeCChHhC
Confidence 4678999999876 78888778888887654567788888886544
|
| >3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A* | Back alignment and structure |
|---|
Probab=96.72 E-value=0.00031 Score=74.87 Aligned_cols=67 Identities=18% Similarity=0.231 Sum_probs=47.1
Q ss_pred ceeeCCCCCCHHHHHHHHh---hcccCCCceE--------EEcCeeCCCCC-hHHHhhcCeeec------cccccccccc
Q 037346 963 LVLRGRTGSGKSTLIQTLF---RIVESTAGHI--------LIDGKDISLIG-LHDLRTRLSIIP------QDPTMFEGTT 1024 (1156)
Q Consensus 963 ~vL~G~SGsGKSTL~~lL~---rl~~p~~G~I--------~idG~di~~i~-~~~LR~~i~~Vp------Qdp~LF~gTI 1024 (1156)
++|.|++||||||+.+.|. |+...+.|.+ .-.|+++.+.. +..+.+.+.+.. |+.+|+...|
T Consensus 12 i~i~G~~GsGKsTla~~la~~lg~~~~d~g~~~r~~~~~~~~~gi~~~d~~~~~~~~~~~~~~~~~~~~~~~v~l~g~~v 91 (233)
T 3r20_A 12 VAVDGPAGTGKSSVSRGLARALGARYLDTGAMYRIATLAVLRAGADLTDPAAIEKAAADAEIGVGSDPDVDAAFLAGEDV 91 (233)
T ss_dssp EEEECCTTSSHHHHHHHHHHHHTCEEEEHHHHHHHHHHHHHHHTCCTTCHHHHHHHHHTCCEEECCCTTSCCEEETTEEC
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCCcccCCcHHHHHHHHHHHcCCCchhhHHHHHHHHhCCEEEeecCCCcEEEECCeeh
Confidence 5678999999999999998 5555566766 34577776653 556666777766 4556666667
Q ss_pred hhccC
Q 037346 1025 RSNLD 1029 (1156)
Q Consensus 1025 r~Nl~ 1029 (1156)
.+||.
T Consensus 92 ~~~ir 96 (233)
T 3r20_A 92 SSEIR 96 (233)
T ss_dssp TTGGG
T ss_pred hhhhc
Confidence 66664
|
| >4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A | Back alignment and structure |
|---|
Probab=96.72 E-value=0.00059 Score=72.89 Aligned_cols=42 Identities=21% Similarity=0.214 Sum_probs=30.1
Q ss_pred ccccceEEee---CCeEEEEEcCCCCChHHHHHHHhCCCCCCCcEE
Q 037346 375 TLRNINLKVF---HGMRVAVCGTVGSGKSSCLSCILGGVPKESGII 417 (1156)
Q Consensus 375 ~l~~i~l~i~---~g~~~~ivG~~GsGKSTll~~i~g~~~~~~G~i 417 (1156)
-|.+.|+.+. +|.+++|.|++||||||+++.|...+.+ .+.+
T Consensus 12 ~~~~~~~~~~~~~~g~~i~i~G~~GsGKsT~~~~l~~~l~~-~~~~ 56 (229)
T 4eaq_A 12 DLGTENLYFQSNAMSAFITFEGPEGSGKTTVINEVYHRLVK-DYDV 56 (229)
T ss_dssp --------CCCCCCCEEEEEECCTTSCHHHHHHHHHHHHTT-TSCE
T ss_pred CccCCCeeEeecCCCeEEEEEcCCCCCHHHHHHHHHHHHhc-CCCc
Confidence 3566666665 8999999999999999999999998887 5544
|
| >2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426} | Back alignment and structure |
|---|
Probab=96.71 E-value=0.00063 Score=70.94 Aligned_cols=30 Identities=23% Similarity=0.293 Sum_probs=23.7
Q ss_pred CCceeeCCCCCCHHHHHHHHhhcccCCCce
Q 037346 961 LPLVLRGRTGSGKSTLIQTLFRIVESTAGH 990 (1156)
Q Consensus 961 ~~~vL~G~SGsGKSTL~~lL~rl~~p~~G~ 990 (1156)
.++.|.|++|+|||||++++........+.
T Consensus 55 ~~~~l~G~~GtGKT~la~~i~~~~~~~~~~ 84 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLLAAIANELAKRNVS 84 (202)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHHHTTTCC
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHcCCe
Confidence 346788999999999999999877654333
|
| >2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=96.70 E-value=0.0002 Score=85.18 Aligned_cols=65 Identities=17% Similarity=0.162 Sum_probs=52.1
Q ss_pred ceeeCCCCCCHHHHHHHHhhcccCCCceEEEcCeeCCCCChHHHhhcCeeeccccc-cccc-cchhccC
Q 037346 963 LVLRGRTGSGKSTLIQTLFRIVESTAGHILIDGKDISLIGLHDLRTRLSIIPQDPT-MFEG-TTRSNLD 1029 (1156)
Q Consensus 963 ~vL~G~SGsGKSTL~~lL~rl~~p~~G~I~idG~di~~i~~~~LR~~i~~VpQdp~-LF~g-TIr~Nl~ 1029 (1156)
+.|.||+|+|||||+++|.+... .|.|.++|.++.+......++++..++|++. .+.+ .+-|+|+
T Consensus 67 vLL~GppGtGKTtLaraIa~~~~--~~~i~i~g~~~~~~~~g~~~~~v~~lfq~a~~~~p~il~IDEId 133 (499)
T 2dhr_A 67 VLLVGPPGVGKTHLARAVAGEAR--VPFITASGSDFVEMFVGVGAARVRDLFETAKRHAPCIVFIDEID 133 (499)
T ss_dssp EEEECSSSSSHHHHHHHHHHHTT--CCEEEEEGGGGTSSCTTHHHHHHHHHTTTSSSSSSCEEEEECGG
T ss_pred EEEECCCCCCHHHHHHHHHHHhC--CCEEEEehhHHHHhhhhhHHHHHHHHHHHHHhcCCCEEEEehHH
Confidence 67889999999999999999875 7899999999887766667777888888864 2322 5667775
|
| >2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A* | Back alignment and structure |
|---|
Probab=96.68 E-value=0.0004 Score=71.03 Aligned_cols=31 Identities=23% Similarity=0.318 Sum_probs=26.9
Q ss_pred eCCeEEEEEcCCCCChHHHHHHHhCCCCCCCc
Q 037346 384 FHGMRVAVCGTVGSGKSSCLSCILGGVPKESG 415 (1156)
Q Consensus 384 ~~g~~~~ivG~~GsGKSTll~~i~g~~~~~~G 415 (1156)
++|++++|+|++||||||+.+.|.+.+++ .|
T Consensus 3 ~~g~~i~l~G~~GsGKST~~~~L~~~l~~-~g 33 (179)
T 2pez_A 3 MRGCTVWLTGLSGAGKTTVSMALEEYLVC-HG 33 (179)
T ss_dssp -CCEEEEEECCTTSSHHHHHHHHHHHHHH-TT
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHhh-CC
Confidence 47999999999999999999999987755 45
|
| >3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.62 E-value=0.00074 Score=72.39 Aligned_cols=126 Identities=11% Similarity=0.102 Sum_probs=65.3
Q ss_pred eeCCeEEEEEcCCCCChHHHHHHHhCCCCCCCcEEEEcCeEEEEecCCcCC-CccHHHHhhcCCCCCHHHHHHHHHHhCC
Q 037346 383 VFHGMRVAVCGTVGSGKSSCLSCILGGVPKESGIIRLCGTKAYVAQSPWIQ-SGKIEENILFGKEMDRERYERVLEACSL 461 (1156)
Q Consensus 383 i~~g~~~~ivG~~GsGKSTll~~i~g~~~~~~G~i~~~g~~~~v~Q~~~~~-~~ti~eni~~~~~~~~~~~~~~~~~~~l 461 (1156)
+.+|+.++++||+||||||++..++.......|. ......+.+.|... ..++.+|+....... +-..++.
T Consensus 73 i~~g~~~~i~g~TGsGKTt~~~~~~~~~~~~~~~---~~~~~~l~~~p~~~la~q~~~~~~~~~~~~------~~~~~g~ 143 (235)
T 3llm_A 73 ISQNSVVIIRGATGCGKTTQVPQFILDDFIQNDR---AAECNIVVTQPRRISAVSVAERVAFERGEE------PGKSCGY 143 (235)
T ss_dssp HHHCSEEEEECCTTSSHHHHHHHHHHHHHHHTTC---GGGCEEEEEESSHHHHHHHHHHHHHTTTCC------TTSSEEE
T ss_pred HhcCCEEEEEeCCCCCcHHhHHHHHhcchhhcCC---CCceEEEEeccchHHHHHHHHHHHHHhccc------cCceEEE
Confidence 4578999999999999999887765432211221 12335555666432 225555553211100 0000000
Q ss_pred chhhhhCCCCCccccccC---CCCCCHHHHHHHHHHHhhccCCCeeeeeCCCC-CcCHHHHHHHHHHHH
Q 037346 462 KKDLEVLPFGDQTIIGER---GINLSGGQKQRIQIARPLYQDADIFLLDDPFS-PVDDHTGAHLFKFCW 526 (1156)
Q Consensus 462 ~~~~~~~~~g~~t~v~~~---g~~LSgGqkqRi~lAral~~~~~illlDep~s-~lD~~~~~~i~~~~~ 526 (1156)
... .+....+. ..-.+.|+-.+.. +.-+.+.+++++||+=. ++|........+.+.
T Consensus 144 ~~~-------~~~~~~~~~~~Ivv~Tpg~l~~~l--~~~l~~~~~lVlDEah~~~~~~~~~~~~l~~i~ 203 (235)
T 3llm_A 144 SVR-------FESILPRPHASIMFCTVGVLLRKL--EAGIRGISHVIVDEIHERDINTDFLLVVLRDVV 203 (235)
T ss_dssp EET-------TEEECCCSSSEEEEEEHHHHHHHH--HHCCTTCCEEEECCTTSCCHHHHHHHHHHHHHH
T ss_pred eec-------hhhccCCCCCeEEEECHHHHHHHH--HhhhcCCcEEEEECCccCCcchHHHHHHHHHHH
Confidence 000 00000000 1123567766664 33688999999999976 577765543444443
|
| >2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=96.62 E-value=0.0018 Score=74.18 Aligned_cols=45 Identities=7% Similarity=0.197 Sum_probs=36.6
Q ss_pred cCCCEEEEe-cCCcCCCHHHHHHHHHHHHHhcCCceEEEee--cCccc
Q 037346 1068 KKSKVLVLD-EATASVDTATDNQIQQTLRQHFSDCTVVTIA--HRITS 1112 (1156)
Q Consensus 1068 r~~~ILiLD-EaTS~LD~~te~~I~~~l~~~~~~~TvI~Ia--Hrl~t 1112 (1156)
.++-++++| ++++++|.+....+.+.+.+...++++|+|. |++..
T Consensus 247 ad~illV~D~s~~~~~~~~~~~~~~~~i~~~~~~~piilV~NK~Dl~~ 294 (357)
T 2e87_A 247 GNLIIYIFDPSEHCGFPLEEQIHLFEEVHGEFKDLPFLVVINKIDVAD 294 (357)
T ss_dssp CSEEEEEECTTCTTSSCHHHHHHHHHHHHHHTTTSCEEEEECCTTTCC
T ss_pred CCEEEEEEeCCccccCCHHHHHHHHHHHHHhcCCCCEEEEEECcccCC
Confidence 456689999 9999999998888888787766688999999 77643
|
| >2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus} | Back alignment and structure |
|---|
Probab=96.62 E-value=0.0014 Score=75.31 Aligned_cols=35 Identities=20% Similarity=0.437 Sum_probs=26.9
Q ss_pred CCceeeCCCCCCHHHHHHHHhhcccCCC----ceEEEcC
Q 037346 961 LPLVLRGRTGSGKSTLIQTLFRIVESTA----GHILIDG 995 (1156)
Q Consensus 961 ~~~vL~G~SGsGKSTL~~lL~rl~~p~~----G~I~idG 995 (1156)
..++|.|++|+|||||++.+.+...+.. ..+.+++
T Consensus 46 ~~vli~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~i~~ 84 (386)
T 2qby_A 46 NNIFIYGLTGTGKTAVVKFVLSKLHKKFLGKFKHVYINT 84 (386)
T ss_dssp CCEEEEECTTSSHHHHHHHHHHHHHHHTCSSCEEEEEEH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHHhcCCceEEEEEC
Confidence 3567889999999999999999886543 3455554
|
| >1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=96.62 E-value=0.00046 Score=72.24 Aligned_cols=43 Identities=9% Similarity=0.133 Sum_probs=29.4
Q ss_pred CCCHHHHHHHHHHHHHhcCCceEEEeecCcccc---cccCEEEEEeC
Q 037346 1081 SVDTATDNQIQQTLRQHFSDCTVVTIAHRITSV---LDSAMVLLLNH 1124 (1156)
Q Consensus 1081 ~LD~~te~~I~~~l~~~~~~~TvI~IaHrl~ti---~~~D~I~Vl~~ 1124 (1156)
.+++...+.+.+.+... .+.++|+-+|.+... ..||.+++++-
T Consensus 87 ~~~p~v~~~~~~~~~~~-~~~~vv~~~~~l~e~~~~~~~d~vi~l~~ 132 (206)
T 1jjv_A 87 LLHPAIRERMKQKLAEQ-TAPYTLFVVPLLIENKLTALCDRILVVDV 132 (206)
T ss_dssp HHHHHHHHHHHHHHHTC-CSSEEEEECTTTTTTTCGGGCSEEEEEEC
T ss_pred ccCHHHHHHHHHHHHhc-CCCEEEEEechhhhcCcHhhCCEEEEEEC
Confidence 45666666666666543 355788778877553 56999999974
|
| >3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=96.59 E-value=0.00072 Score=70.44 Aligned_cols=38 Identities=24% Similarity=0.393 Sum_probs=24.1
Q ss_pred eEEEEEEEEEEcCCCCceeeCCCCCCHHHHHHHHhhcc
Q 037346 947 EVNIRHLQVRYAPNLPLVLRGRTGSGKSTLIQTLFRIV 984 (1156)
Q Consensus 947 ~I~~~~Vsf~Y~~~~~~vL~G~SGsGKSTL~~lL~rl~ 984 (1156)
.-..+||+|...++..++|.|++||||||+.+.|.+.+
T Consensus 12 ~~~~~~~~~~~~~~~~i~l~G~~GsGKsTl~~~La~~l 49 (199)
T 3vaa_A 12 DLGTENLYFQSNAMVRIFLTGYMGAGKTTLGKAFARKL 49 (199)
T ss_dssp ------------CCCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCCCceeEecCCCCEEEEEcCCCCCHHHHHHHHHHHc
Confidence 34678999999888888999999999999999999876
|
| >2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A* | Back alignment and structure |
|---|
Probab=96.58 E-value=0.00032 Score=71.77 Aligned_cols=39 Identities=28% Similarity=0.445 Sum_probs=31.5
Q ss_pred CCCceeeCCCCCCHHHHHHHHhhcccCCCc--eEEEcCeeCC
Q 037346 960 NLPLVLRGRTGSGKSTLIQTLFRIVESTAG--HILIDGKDIS 999 (1156)
Q Consensus 960 ~~~~vL~G~SGsGKSTL~~lL~rl~~p~~G--~I~idG~di~ 999 (1156)
+..++|.|++||||||+++.|.+.+.+ .| .|.+||..++
T Consensus 5 g~~i~l~G~~GsGKST~~~~L~~~l~~-~g~~~i~~d~~~~~ 45 (179)
T 2pez_A 5 GCTVWLTGLSGAGKTTVSMALEEYLVC-HGIPCYTLDGDNIR 45 (179)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHHH-TTCCEEEEEHHHHT
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHhh-CCCcEEEECChHHH
Confidence 334678899999999999999999876 67 7777876554
|
| >1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A* | Back alignment and structure |
|---|
Probab=96.55 E-value=0.0017 Score=73.19 Aligned_cols=29 Identities=24% Similarity=0.298 Sum_probs=24.5
Q ss_pred CCeEEEEEcCCCCChHHHHHHHhCCCCCC
Q 037346 385 HGMRVAVCGTVGSGKSSCLSCILGGVPKE 413 (1156)
Q Consensus 385 ~g~~~~ivG~~GsGKSTll~~i~g~~~~~ 413 (1156)
.+..+.|.||+|+|||||++.|.+.+...
T Consensus 36 ~~~~lll~G~~GtGKT~la~~i~~~~~~~ 64 (324)
T 1l8q_A 36 LYNPIFIYGSVGTGKTHLLQAAGNEAKKR 64 (324)
T ss_dssp SCSSEEEECSSSSSHHHHHHHHHHHHHHT
T ss_pred CCCeEEEECCCCCcHHHHHHHHHHHHHHC
Confidence 35679999999999999999999876543
|
| >1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A | Back alignment and structure |
|---|
Probab=96.54 E-value=0.0095 Score=67.73 Aligned_cols=140 Identities=18% Similarity=0.157 Sum_probs=75.9
Q ss_pred cCCCCceeeCCCCCCHHHHHHHHhhcccCC-CceEEEcCeeCCCCChHHHhhcCeeeccccccccccchhccCCCCCCCH
Q 037346 958 APNLPLVLRGRTGSGKSTLIQTLFRIVEST-AGHILIDGKDISLIGLHDLRTRLSIIPQDPTMFEGTTRSNLDPLEEHAD 1036 (1156)
Q Consensus 958 ~~~~~~vL~G~SGsGKSTL~~lL~rl~~p~-~G~I~idG~di~~i~~~~LR~~i~~VpQdp~LF~gTIr~Nl~~~~~~~d 1036 (1156)
+++.-+.|.|++|||||||+..++.-.... ...++||..... +.. .-+++++-+ +|+....+.+.
T Consensus 61 ~~G~ii~I~G~pGsGKTtLal~la~~~~~~g~~vlyid~E~s~--~~~-~a~~~g~~~-----------~~l~i~~~~~~ 126 (356)
T 1u94_A 61 PMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHAL--DPI-YARKLGVDI-----------DNLLCSQPDTG 126 (356)
T ss_dssp ETTSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCC--CHH-HHHHTTCCG-----------GGCEEECCSSH
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCCc--cHH-HHHHcCCCh-----------hheeeeCCCCH
Confidence 455556677999999999998877654333 335667764321 111 122333322 23322222333
Q ss_pred HHHHHHHHHcCCChHHHhhcCCccccccccc--cCCCEEEEecCCcCCC-HH------------HHHHHHHHHHHh----
Q 037346 1037 EQIWEALDKCQLGDEVRKKKGKLDSQGRVLL--KKSKVLVLDEATASVD-TA------------TDNQIQQTLRQH---- 1097 (1156)
Q Consensus 1037 eei~~al~~~~l~~~i~~lp~gl~s~ARALL--r~~~ILiLDEaTS~LD-~~------------te~~I~~~l~~~---- 1097 (1156)
+++.+.++ .+. .+++++|+|++++-.. .+ ..+.+.+.++++
T Consensus 127 e~~~~~~~--------------------~l~~~~~~~lVVIDsl~~l~~~~e~~~~~g~~~~~~q~r~~~~~l~~L~~~a 186 (356)
T 1u94_A 127 EQALEICD--------------------ALARSGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNL 186 (356)
T ss_dssp HHHHHHHH--------------------HHHHHTCCSEEEEECGGGCCCHHHHTTC------CHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHH--------------------HHHhccCCCEEEEcCHHHhcchhhhccccccchhHHHHHHHHHHHHHHHHHH
Confidence 44433332 121 3689999999998763 21 112334444433
Q ss_pred -cCCceEEEeecCccc----------------c-cccCEEEEEeCcEEeeec
Q 037346 1098 -FSDCTVVTIAHRITS----------------V-LDSAMVLLLNHGLIKEYD 1131 (1156)
Q Consensus 1098 -~~~~TvI~IaHrl~t----------------i-~~~D~I~Vl~~G~IvE~G 1131 (1156)
..++|||++.|--.. + ..+|-++.+...++...|
T Consensus 187 ~~~~~~VI~~nq~~~~~~~~fg~~~~~~gG~~l~~~advrl~l~r~~~~k~g 238 (356)
T 1u94_A 187 KQSNTLLIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGAVKEG 238 (356)
T ss_dssp HHHTCEEEEEEC--------------CTTCSHHHHHCSEEEEEEEEEEEESS
T ss_pred HHhCCEEEEEeccccccCcccCCCcccCCCcceeeeccEEEEEEEeeeeccC
Confidence 138999999985322 1 247888888766654333
|
| >3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A | Back alignment and structure |
|---|
Probab=96.53 E-value=0.0021 Score=68.54 Aligned_cols=28 Identities=21% Similarity=0.271 Sum_probs=22.8
Q ss_pred CCCceeeCCCCCCHHHHHHHHhhcccCC
Q 037346 960 NLPLVLRGRTGSGKSTLIQTLFRIVEST 987 (1156)
Q Consensus 960 ~~~~vL~G~SGsGKSTL~~lL~rl~~p~ 987 (1156)
+.++.|.|++|+|||||++.+.+.....
T Consensus 52 ~~~~ll~G~~G~GKT~la~~l~~~~~~~ 79 (242)
T 3bos_A 52 VQAIYLWGPVKSGRTHLIHAACARANEL 79 (242)
T ss_dssp CSEEEEECSTTSSHHHHHHHHHHHHHHT
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHc
Confidence 3456788999999999999998876543
|
| >3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.52 E-value=0.0061 Score=65.29 Aligned_cols=27 Identities=33% Similarity=0.484 Sum_probs=22.8
Q ss_pred ceeeCCCCCCHHHHHHHHhhcccCCCc
Q 037346 963 LVLRGRTGSGKSTLIQTLFRIVESTAG 989 (1156)
Q Consensus 963 ~vL~G~SGsGKSTL~~lL~rl~~p~~G 989 (1156)
++|.|++|+|||||++.|+|-..+.+|
T Consensus 32 i~lvG~~g~GKStlin~l~g~~~~~~~ 58 (239)
T 3lxx_A 32 IVLVGKTGAGKSATGNSILGRKVFHSG 58 (239)
T ss_dssp EEEECCTTSSHHHHHHHHHTSCCSCC-
T ss_pred EEEECCCCCCHHHHHHHHcCCCcCccC
Confidence 578899999999999999997666555
|
| >1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A* | Back alignment and structure |
|---|
Probab=96.49 E-value=0.00047 Score=72.60 Aligned_cols=40 Identities=23% Similarity=0.269 Sum_probs=34.6
Q ss_pred EEeeCCeEEEEEcCCCCChHHHHHHHhCCCCCCCc--EEEEc
Q 037346 381 LKVFHGMRVAVCGTVGSGKSSCLSCILGGVPKESG--IIRLC 420 (1156)
Q Consensus 381 l~i~~g~~~~ivG~~GsGKSTll~~i~g~~~~~~G--~i~~~ 420 (1156)
+.+++|.+++|+|++||||||+.+.|.+.++|..| .+.++
T Consensus 20 ~~~~~~~~i~~~G~~GsGKsT~~~~l~~~l~~~~g~~~~~~~ 61 (211)
T 1m7g_A 20 LRNQRGLTIWLTGLSASGKSTLAVELEHQLVRDRRVHAYRLD 61 (211)
T ss_dssp HHTSSCEEEEEECSTTSSHHHHHHHHHHHHHHHHCCCEEEEC
T ss_pred ccCCCCCEEEEECCCCCCHHHHHHHHHHHhccccCCcEEEEC
Confidence 55788999999999999999999999998877777 55554
|
| >1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A* | Back alignment and structure |
|---|
Probab=96.49 E-value=0.00087 Score=69.69 Aligned_cols=41 Identities=17% Similarity=0.209 Sum_probs=31.4
Q ss_pred EEeCCCCCCCccccceEEeeCCeEEEEEcCCCCChHHHHHHHhC
Q 037346 365 FSWDFSSPNPTLRNINLKVFHGMRVAVCGTVGSGKSSCLSCILG 408 (1156)
Q Consensus 365 f~~~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKSTll~~i~g 408 (1156)
++|+. -..+++++++..++++ ++++|++|+|||||++.+.+
T Consensus 7 ~~~~~--~~~~l~~~~~~~~~~k-i~lvG~~~vGKSsLi~~l~~ 47 (198)
T 1f6b_A 7 WIYSG--FSSVLQFLGLYKKTGK-LVFLGLDNAGKTTLLHMLKD 47 (198)
T ss_dssp --------CHHHHHHTCTTCCEE-EEEEEETTSSHHHHHHHHSC
T ss_pred HHHHH--HHHHHHHhhccCCCcE-EEEECCCCCCHHHHHHHHhc
Confidence 44542 3468999999988874 78999999999999999987
|
| >2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus} | Back alignment and structure |
|---|
Probab=96.49 E-value=0.0073 Score=71.20 Aligned_cols=129 Identities=12% Similarity=0.059 Sum_probs=76.4
Q ss_pred CccccceEEeeCCeEEEEEcCCCCChHHHHHHHhCCCCCCCcEEEEcCeEEEEecCCcCCCccHHHHhhcCCCCCHHHH-
Q 037346 374 PTLRNINLKVFHGMRVAVCGTVGSGKSSCLSCILGGVPKESGIIRLCGTKAYVAQSPWIQSGKIEENILFGKEMDRERY- 452 (1156)
Q Consensus 374 ~~l~~i~l~i~~g~~~~ivG~~GsGKSTll~~i~g~~~~~~G~i~~~g~~~~v~Q~~~~~~~ti~eni~~~~~~~~~~~- 452 (1156)
+.|+.+.--+++|+++.|.|++|+|||||+..++.......| ..+.|++=+ .+.+.+
T Consensus 188 ~~LD~~lgGl~~G~l~ii~G~pg~GKT~lal~ia~~~a~~~g-----~~vl~~slE-----------------~~~~~l~ 245 (444)
T 2q6t_A 188 KELDQLIGTLGPGSLNIIAARPAMGKTAFALTIAQNAALKEG-----VGVGIYSLE-----------------MPAAQLT 245 (444)
T ss_dssp HHHHHHHCCCCTTCEEEEEECTTSCHHHHHHHHHHHHHHTTC-----CCEEEEESS-----------------SCHHHHH
T ss_pred HhhhhhcCCcCCCcEEEEEeCCCCCHHHHHHHHHHHHHHhCC-----CeEEEEECC-----------------CCHHHHH
Confidence 456666656899999999999999999999888765432222 234444322 222222
Q ss_pred HHHHH-HhCCchhhhhCCCCCccccccCCCCCCHHHHHHHHHHHhhccCCCeeeeeCCCCCcCHHHHHHHHHHHHhcCCC
Q 037346 453 ERVLE-ACSLKKDLEVLPFGDQTIIGERGINLSGGQKQRIQIARPLYQDADIFLLDDPFSPVDDHTGAHLFKFCWVSSSK 531 (1156)
Q Consensus 453 ~~~~~-~~~l~~~~~~~~~g~~t~v~~~g~~LSgGqkqRi~lAral~~~~~illlDep~s~lD~~~~~~i~~~~~~~~~~ 531 (1156)
.+.+. ..++. ...+. . ..|+..+.+|+.-|...+.+.++++.|+|...++.. ......+....+.
T Consensus 246 ~R~~~~~~~i~--~~~l~---------~-g~l~~~~~~~~~~a~~~l~~~~l~i~d~~~~s~~~l--~~~~~~l~~~~~~ 311 (444)
T 2q6t_A 246 LRMMCSEARID--MNRVR---------L-GQLTDRDFSRLVDVASRLSEAPIYIDDTPDLTLMEV--RARARRLVSQNQV 311 (444)
T ss_dssp HHHHHHHTTCC--TTTCC---------G-GGCCHHHHHHHHHHHHHHHTSCEEEECCTTCBHHHH--HHHHHHHHHHSCC
T ss_pred HHHHHHHcCCC--HHHHh---------C-CCCCHHHHHHHHHHHHHHhcCCEEEECCCCCCHHHH--HHHHHHHHHHcCC
Confidence 22221 22221 11111 1 269999999999888888888999988875444322 2222223233455
Q ss_pred EEEEEcc
Q 037346 532 TVIYATH 538 (1156)
Q Consensus 532 tvi~vtH 538 (1156)
.+|+|-+
T Consensus 312 ~lIvID~ 318 (444)
T 2q6t_A 312 GLIIIDY 318 (444)
T ss_dssp CEEEEEC
T ss_pred CEEEEcC
Confidence 5665543
|
| >1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20 | Back alignment and structure |
|---|
Probab=96.49 E-value=0.0014 Score=74.54 Aligned_cols=44 Identities=18% Similarity=0.328 Sum_probs=34.1
Q ss_pred CCCEEEEecCCcCCCHHHHHHHHHHHHHhcCCceEEEeecCcccc
Q 037346 1069 KSKVLVLDEATASVDTATDNQIQQTLRQHFSDCTVVTIAHRITSV 1113 (1156)
Q Consensus 1069 ~~~ILiLDEaTS~LD~~te~~I~~~l~~~~~~~TvI~IaHrl~ti 1113 (1156)
+++||++|| ...++.+....+.+.+++...+..+|+++++...+
T Consensus 133 ~~~vliiDE-~~~l~~~~~~~Ll~~le~~~~~~~~il~~~~~~~l 176 (353)
T 1sxj_D 133 PYKIIILDE-ADSMTADAQSALRRTMETYSGVTRFCLICNYVTRI 176 (353)
T ss_dssp SCEEEEETT-GGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGS
T ss_pred CceEEEEEC-CCccCHHHHHHHHHHHHhcCCCceEEEEeCchhhC
Confidence 568999999 56788888888888888765566677788776543
|
| >2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.46 E-value=0.00075 Score=76.94 Aligned_cols=36 Identities=19% Similarity=0.293 Sum_probs=30.6
Q ss_pred eCCeEEEEEcCCCCChHHHHHHHhCCCCCCCcEEEE
Q 037346 384 FHGMRVAVCGTVGSGKSSCLSCILGGVPKESGIIRL 419 (1156)
Q Consensus 384 ~~g~~~~ivG~~GsGKSTll~~i~g~~~~~~G~i~~ 419 (1156)
+++..++|+|++|||||||++.|+|.+.+..|+|.+
T Consensus 72 ~~~~~v~lvG~pgaGKSTLln~L~~~~~~~~~~v~V 107 (349)
T 2www_A 72 PLAFRVGLSGPPGAGKSTFIEYFGKMLTERGHKLSV 107 (349)
T ss_dssp CSCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEE
T ss_pred cCceEEEEEcCCCCCHHHHHHHHHHHhhhcCCeEEE
Confidence 357799999999999999999999988877665543
|
| >3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.45 E-value=0.004 Score=66.62 Aligned_cols=39 Identities=13% Similarity=0.230 Sum_probs=24.2
Q ss_pred cccCCCEEEEecCCc-CCCHHHHHHHHHHHHHhcCCceEE
Q 037346 1066 LLKKSKVLVLDEATA-SVDTATDNQIQQTLRQHFSDCTVV 1104 (1156)
Q Consensus 1066 LLr~~~ILiLDEaTS-~LD~~te~~I~~~l~~~~~~~TvI 1104 (1156)
-+++-+++|+|||-. ++|......+.+.+.....++.+|
T Consensus 173 ~l~~~~~lVlDEah~~~~~~~~~~~~l~~i~~~~~~~~~i 212 (235)
T 3llm_A 173 GIRGISHVIVDEIHERDINTDFLLVVLRDVVQAYPEVRIV 212 (235)
T ss_dssp CCTTCCEEEECCTTSCCHHHHHHHHHHHHHHHHCTTSEEE
T ss_pred hhcCCcEEEEECCccCCcchHHHHHHHHHHHhhCCCCeEE
Confidence 367889999999976 566666533444444444444333
|
| >1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1 | Back alignment and structure |
|---|
Probab=96.44 E-value=0.0011 Score=78.20 Aligned_cols=59 Identities=22% Similarity=0.477 Sum_probs=38.0
Q ss_pred ceeeCCCCCCHHHHHHHHhhcc------------cCCCceEEEcCeeCCCCChHHHhhcCeeecccccccc
Q 037346 963 LVLRGRTGSGKSTLIQTLFRIV------------ESTAGHILIDGKDISLIGLHDLRTRLSIIPQDPTMFE 1021 (1156)
Q Consensus 963 ~vL~G~SGsGKSTL~~lL~rl~------------~p~~G~I~idG~di~~i~~~~LR~~i~~VpQdp~LF~ 1021 (1156)
++|.|++|+|||||++.|.|.. ++.+|.+.++|.++.-++..-+|+..++.+|....|.
T Consensus 183 vaivG~~gvGKSTLln~l~g~~~~~v~~~~gtT~d~~~~~i~~~g~~~~l~Dt~G~~~~~~~~~~~~e~~~ 253 (439)
T 1mky_A 183 VAIVGRPNVGKSTLFNAILNKERALVSPIPGTTRDPVDDEVFIDGRKYVFVDTAGLRRKSRVEPRTVEKYS 253 (439)
T ss_dssp EEEECSTTSSHHHHHHHHHTSTTEEECCCC------CCEEEEETTEEEEESSCSCC-----------CCSC
T ss_pred EEEECCCCCCHHHHHHHHhCCcccccCCCCCCcCCceEEEEEECCEEEEEEECCCCccccccchhhHHHHH
Confidence 5899999999999999999984 3778999999997765565556666666667655553
|
| >1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20 | Back alignment and structure |
|---|
Probab=96.43 E-value=0.0037 Score=67.74 Aligned_cols=34 Identities=24% Similarity=0.439 Sum_probs=26.0
Q ss_pred CceeeCCCCCCHHHHHHHHhhcccCCCceEEEcCee
Q 037346 962 PLVLRGRTGSGKSTLIQTLFRIVESTAGHILIDGKD 997 (1156)
Q Consensus 962 ~~vL~G~SGsGKSTL~~lL~rl~~p~~G~I~idG~d 997 (1156)
.+.|.|++|+|||||+++|.+..... -+.+++.+
T Consensus 47 ~vll~G~~GtGKT~la~~la~~~~~~--~~~i~~~~ 80 (257)
T 1lv7_A 47 GVLMVGPPGTGKTLLAKAIAGEAKVP--FFTISGSD 80 (257)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHTCC--EEEECSCS
T ss_pred eEEEECcCCCCHHHHHHHHHHHcCCC--EEEEeHHH
Confidence 36788999999999999999987532 35555544
|
| >2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax} | Back alignment and structure |
|---|
Probab=96.43 E-value=0.00072 Score=70.77 Aligned_cols=66 Identities=26% Similarity=0.311 Sum_probs=41.8
Q ss_pred CCCCceeeCCCCCCHHHHHHHHhhcccC-CCceE----------EEcCeeCCCCChHHHhhcCeeeccccccccccchhc
Q 037346 959 PNLPLVLRGRTGSGKSTLIQTLFRIVES-TAGHI----------LIDGKDISLIGLHDLRTRLSIIPQDPTMFEGTTRSN 1027 (1156)
Q Consensus 959 ~~~~~vL~G~SGsGKSTL~~lL~rl~~p-~~G~I----------~idG~di~~i~~~~LR~~i~~VpQdp~LF~gTIr~N 1027 (1156)
++..++|.|+||||||||++.|...++. ..+.+ .+||.+..-++.+.+++.+ .|..+++.+....|
T Consensus 11 ~~~~i~l~G~sGsGKsTl~~~L~~~~~~~~~~~~~~ttR~~~~~e~~g~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~ 87 (204)
T 2qor_A 11 RIPPLVVCGPSGVGKGTLIKKVLSEFPSRFRFSISCTTRNKREKETNGVDYYFVDKDDFERKL---KEGQFLEFDKYANN 87 (204)
T ss_dssp CCCCEEEECCTTSCHHHHHHHHHHHCTTTEEECCEEECSCCCTTCCBTTTEEECCHHHHHHHH---HTTCEEEEEEETTE
T ss_pred cCCEEEEECCCCCCHHHHHHHHHHhCccceeeeeeecCCCCCCCCCCCcceeeCCHHHHHHHH---HcCCCEEeHHhCCC
Confidence 4556788999999999999999987642 12211 2356665556666666542 45555554444444
|
| >3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A | Back alignment and structure |
|---|
Probab=96.42 E-value=0.00058 Score=82.65 Aligned_cols=47 Identities=21% Similarity=0.314 Sum_probs=41.0
Q ss_pred CccccceEEeeCCeEEEEEcCCCCChHHHHHHHhCCCCCCCcEEEEcC
Q 037346 374 PTLRNINLKVFHGMRVAVCGTVGSGKSSCLSCILGGVPKESGIIRLCG 421 (1156)
Q Consensus 374 ~~l~~i~l~i~~g~~~~ivG~~GsGKSTll~~i~g~~~~~~G~i~~~g 421 (1156)
.+++++++++ +|+.++++||+|||||||+++|.+.+.+..|.|.++|
T Consensus 97 ~~l~~~~~~~-~g~~vll~Gp~GtGKTtlar~ia~~l~~~~~~i~~~~ 143 (543)
T 3m6a_A 97 LAVQKLTKSL-KGPILCLAGPPGVGKTSLAKSIAKSLGRKFVRISLGG 143 (543)
T ss_dssp HHHHHHSSSC-CSCEEEEESSSSSSHHHHHHHHHHHHTCEEEEECCCC
T ss_pred HHHHHhcccC-CCCEEEEECCCCCCHHHHHHHHHHhcCCCeEEEEecc
Confidence 4678888888 8999999999999999999999999988777776554
|
| >1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A | Back alignment and structure |
|---|
Probab=96.41 E-value=0.00031 Score=80.54 Aligned_cols=62 Identities=19% Similarity=0.306 Sum_probs=43.0
Q ss_pred EEEEEEEEcCCCCceeeCCCCCCHHHHHHHHhhcccCCCceEEEcCeeCCCCChHHHhhcCeeecccccc
Q 037346 950 IRHLQVRYAPNLPLVLRGRTGSGKSTLIQTLFRIVESTAGHILIDGKDISLIGLHDLRTRLSIIPQDPTM 1019 (1156)
Q Consensus 950 ~~~Vsf~Y~~~~~~vL~G~SGsGKSTL~~lL~rl~~p~~G~I~idG~di~~i~~~~LR~~i~~VpQdp~L 1019 (1156)
++++++..+++..++|.||+|||||||+++|.+.+ +|.+..- +. +.+.++..++++||...+
T Consensus 159 l~~~~~~i~~~~~i~l~G~~GsGKSTl~~~l~~~~---~g~~~~~--~~---~~~~~~~~lg~~~q~~~~ 220 (377)
T 1svm_A 159 LKCMVYNIPKKRYWLFKGPIDSGKTTLAAALLELC---GGKALNV--NL---PLDRLNFELGVAIDQFLV 220 (377)
T ss_dssp HHHHHHCCTTCCEEEEECSTTSSHHHHHHHHHHHH---CCEEECC--SS---CTTTHHHHHGGGTTCSCE
T ss_pred HHhcccccCCCCEEEEECCCCCCHHHHHHHHHhhc---CCcEEEE--ec---cchhHHHHHHHhcchhHH
Confidence 34445555566667889999999999999999964 6777651 11 112334458899998765
|
| >3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli} | Back alignment and structure |
|---|
Probab=96.36 E-value=0.0071 Score=59.33 Aligned_cols=40 Identities=15% Similarity=0.218 Sum_probs=27.2
Q ss_pred CCCEEEEecCCcCCCHHHHHHHHHHHHHhcCCceEEEeecC
Q 037346 1069 KSKVLVLDEATASVDTATDNQIQQTLRQHFSDCTVVTIAHR 1109 (1156)
Q Consensus 1069 ~~~ILiLDEaTS~LD~~te~~I~~~l~~~~~~~TvI~IaHr 1109 (1156)
+..+|++||.- .++.+....+.+.+.....+..+|..|.+
T Consensus 76 ~~g~l~ldei~-~l~~~~q~~Ll~~l~~~~~~~~~I~~t~~ 115 (145)
T 3n70_A 76 QGGTLVLSHPE-HLTREQQYHLVQLQSQEHRPFRLIGIGDT 115 (145)
T ss_dssp TTSCEEEECGG-GSCHHHHHHHHHHHHSSSCSSCEEEEESS
T ss_pred CCcEEEEcChH-HCCHHHHHHHHHHHhhcCCCEEEEEECCc
Confidence 34689999995 67888877777777544344555555553
|
| >3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=96.33 E-value=0.0027 Score=70.73 Aligned_cols=31 Identities=19% Similarity=0.216 Sum_probs=27.5
Q ss_pred EEeeCCeEEEEEcCCCCChHHHHHHHhCCCC
Q 037346 381 LKVFHGMRVAVCGTVGSGKSSCLSCILGGVP 411 (1156)
Q Consensus 381 l~i~~g~~~~ivG~~GsGKSTll~~i~g~~~ 411 (1156)
+.++++..+.|.||+|+|||||+++|.++..
T Consensus 44 ~~~~~~~~vLL~Gp~GtGKT~la~ala~~~~ 74 (301)
T 3cf0_A 44 FGMTPSKGVLFYGPPGCGKTLLAKAIANECQ 74 (301)
T ss_dssp HCCCCCSEEEEECSSSSSHHHHHHHHHHHTT
T ss_pred cCCCCCceEEEECCCCcCHHHHHHHHHHHhC
Confidence 3467889999999999999999999999764
|
| >2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B* | Back alignment and structure |
|---|
Probab=96.30 E-value=0.0031 Score=79.45 Aligned_cols=52 Identities=13% Similarity=0.128 Sum_probs=36.8
Q ss_pred ccccccCCCEEEEecCCc-CCCHHHHHHHHHHHHHhcCC-ceEEE-eecCccccc
Q 037346 1063 GRVLLKKSKVLVLDEATA-SVDTATDNQIQQTLRQHFSD-CTVVT-IAHRITSVL 1114 (1156)
Q Consensus 1063 ARALLr~~~ILiLDEaTS-~LD~~te~~I~~~l~~~~~~-~TvI~-IaHrl~ti~ 1114 (1156)
+++++.++++||+|||+. ++|.+.-..+.+.+....++ +++++ .||..+.+.
T Consensus 202 ~~~~l~~~~~lIlDEah~R~ld~d~~~~~l~~l~~~~~~~~iIl~SAT~~~~~l~ 256 (773)
T 2xau_A 202 EDHDLSRYSCIILDEAHERTLATDILMGLLKQVVKRRPDLKIIIMSATLDAEKFQ 256 (773)
T ss_dssp HSTTCTTEEEEEECSGGGCCHHHHHHHHHHHHHHHHCTTCEEEEEESCSCCHHHH
T ss_pred hCccccCCCEEEecCccccccchHHHHHHHHHHHHhCCCceEEEEeccccHHHHH
Confidence 356788999999999997 89987766666666555544 45555 478765543
|
| >2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A | Back alignment and structure |
|---|
Probab=96.28 E-value=0.0028 Score=73.55 Aligned_cols=43 Identities=23% Similarity=0.162 Sum_probs=36.9
Q ss_pred CCceeeCCCCCCHHHHHHHHhhcccCCCceEEEcCeeCCCCCh
Q 037346 961 LPLVLRGRTGSGKSTLIQTLFRIVESTAGHILIDGKDISLIGL 1003 (1156)
Q Consensus 961 ~~~vL~G~SGsGKSTL~~lL~rl~~p~~G~I~idG~di~~i~~ 1003 (1156)
..+++.|++||||||++..|.+.+.+.+|+|.+.+.|+..-..
T Consensus 99 ~vi~i~G~~GsGKTT~~~~LA~~l~~~g~~Vllvd~D~~r~aa 141 (425)
T 2ffh_A 99 NLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAADTQRPAA 141 (425)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEECCSSCHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEeeccccCchh
Confidence 3356779999999999999999999999999999888876443
|
| >3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A* | Back alignment and structure |
|---|
Probab=96.25 E-value=0.0022 Score=66.97 Aligned_cols=30 Identities=37% Similarity=0.458 Sum_probs=24.7
Q ss_pred ccceEEeeCCeEEEEEcCCCCChHHHHHHHh
Q 037346 377 RNINLKVFHGMRVAVCGTVGSGKSSCLSCIL 407 (1156)
Q Consensus 377 ~~i~l~i~~g~~~~ivG~~GsGKSTll~~i~ 407 (1156)
.+.++++.+| +++|+|||||||||++.+|.
T Consensus 15 ~~~~i~f~~~-~~~I~G~NgsGKStil~ai~ 44 (203)
T 3qks_A 15 SDTVVEFKEG-INLIIGQNGSGKSSLLDAIL 44 (203)
T ss_dssp SSEEEECCSE-EEEEECCTTSSHHHHHHHHH
T ss_pred cceEEEeCCC-eEEEEcCCCCCHHHHHHHHH
Confidence 3456666654 99999999999999999885
|
| >2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A | Back alignment and structure |
|---|
Probab=96.23 E-value=0.0047 Score=62.40 Aligned_cols=27 Identities=41% Similarity=0.660 Sum_probs=23.5
Q ss_pred eCCeEEEEEcCCCCChHHHHHHHhCCC
Q 037346 384 FHGMRVAVCGTVGSGKSSCLSCILGGV 410 (1156)
Q Consensus 384 ~~g~~~~ivG~~GsGKSTll~~i~g~~ 410 (1156)
++|..++|+|++|+|||||++.+.|..
T Consensus 2 ~~~~ki~ivG~~g~GKStLl~~l~~~~ 28 (172)
T 2gj8_A 2 SHGMKVVIAGRPNAGKSSLLNALAGRE 28 (172)
T ss_dssp --CEEEEEEESTTSSHHHHHHHHHTSC
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 468899999999999999999999864
|
| >1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B* | Back alignment and structure |
|---|
Probab=96.20 E-value=0.0028 Score=65.30 Aligned_cols=34 Identities=24% Similarity=0.349 Sum_probs=20.7
Q ss_pred CccccceEEeeCCeEEEEEcCCCCChHHHHHHHhC
Q 037346 374 PTLRNINLKVFHGMRVAVCGTVGSGKSSCLSCILG 408 (1156)
Q Consensus 374 ~~l~~i~l~i~~g~~~~ivG~~GsGKSTll~~i~g 408 (1156)
.+++++++..++. .++++|++|+|||||++.+.+
T Consensus 12 ~~l~~~~~~~~~~-ki~~vG~~~vGKSsli~~l~~ 45 (190)
T 1m2o_B 12 DVLASLGLWNKHG-KLLFLGLDNAGKTTLLHMLKN 45 (190)
T ss_dssp ------------C-EEEEEESTTSSHHHHHHHHHH
T ss_pred HHHHHhhccCCcc-EEEEECCCCCCHHHHHHHHhc
Confidence 3678999988877 679999999999999999997
|
| >4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A* | Back alignment and structure |
|---|
Probab=96.16 E-value=0.0094 Score=66.41 Aligned_cols=30 Identities=30% Similarity=0.429 Sum_probs=25.9
Q ss_pred CceeeCCCCCCHHHHHHHHhhcccCCCceE
Q 037346 962 PLVLRGRTGSGKSTLIQTLFRIVESTAGHI 991 (1156)
Q Consensus 962 ~~vL~G~SGsGKSTL~~lL~rl~~p~~G~I 991 (1156)
++.|.|++|+||||++++|.+...+.+|.+
T Consensus 49 ~~ll~G~~GtGKt~la~~la~~~~~~~~~~ 78 (311)
T 4fcw_A 49 SFLFLGPTGVGKTELAKTLAATLFDTEEAM 78 (311)
T ss_dssp EEEEESCSSSSHHHHHHHHHHHHHSCGGGE
T ss_pred EEEEECCCCcCHHHHHHHHHHHHcCCCcce
Confidence 457889999999999999999988777654
|
| >1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=96.16 E-value=0.0023 Score=65.67 Aligned_cols=32 Identities=25% Similarity=0.390 Sum_probs=26.4
Q ss_pred cceEEeeCCeEEEEEcCCCCChHHHHHHHhCC
Q 037346 378 NINLKVFHGMRVAVCGTVGSGKSSCLSCILGG 409 (1156)
Q Consensus 378 ~i~l~i~~g~~~~ivG~~GsGKSTll~~i~g~ 409 (1156)
++|++.++|..++|+|++||||||+.+.|...
T Consensus 2 ~~~~~~~~~~~I~l~G~~GsGKSTv~~~La~~ 33 (184)
T 1y63_A 2 PGSMEQPKGINILITGTPGTGKTSMAEMIAAE 33 (184)
T ss_dssp ----CCCSSCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CcCcCCCCCCEEEEECCCCCCHHHHHHHHHHh
Confidence 57888899999999999999999999999865
|
| >3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=96.13 E-value=0.0097 Score=65.43 Aligned_cols=28 Identities=14% Similarity=0.209 Sum_probs=24.6
Q ss_pred eeCCeEEEEEcCCCCChHHHHHHHhCCC
Q 037346 383 VFHGMRVAVCGTVGSGKSSCLSCILGGV 410 (1156)
Q Consensus 383 i~~g~~~~ivG~~GsGKSTll~~i~g~~ 410 (1156)
++++.-+.|.||+|+|||||++++++.+
T Consensus 48 ~~~~~~~ll~G~~GtGKT~la~~la~~~ 75 (285)
T 3h4m_A 48 IEPPKGILLYGPPGTGKTLLAKAVATET 75 (285)
T ss_dssp CCCCSEEEEESSSSSSHHHHHHHHHHHT
T ss_pred CCCCCeEEEECCCCCcHHHHHHHHHHHh
Confidence 3566779999999999999999999875
|
| >3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=96.12 E-value=0.0016 Score=70.21 Aligned_cols=38 Identities=26% Similarity=0.411 Sum_probs=22.2
Q ss_pred eEEEEEE-EEEE-c-------------C---CCCceeeCCCCCCHHHHHHHHhhcc
Q 037346 947 EVNIRHL-QVRY-A-------------P---NLPLVLRGRTGSGKSTLIQTLFRIV 984 (1156)
Q Consensus 947 ~I~~~~V-sf~Y-~-------------~---~~~~vL~G~SGsGKSTL~~lL~rl~ 984 (1156)
.++++|| +++| . + +..++|.|++||||||+.++|.+.+
T Consensus 17 ~l~~~~~~~~~~~~~~~~l~~~~~~i~~~l~g~~i~l~G~~GsGKSTl~~~La~~l 72 (250)
T 3nwj_A 17 LLETGSLLHSPFDEEQQILKKKAEEVKPYLNGRSMYLVGMMGSGKTTVGKIMARSL 72 (250)
T ss_dssp ---------------CHHHHHHHHTTHHHHTTCCEEEECSTTSCHHHHHHHHHHHH
T ss_pred ceEEcceeeEEecCcchhhhhhhhhhhhhcCCCEEEEECCCCCCHHHHHHHHHHhc
Confidence 5889999 9998 2 3 5567888999999999999999855
|
| >3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A | Back alignment and structure |
|---|
Probab=96.08 E-value=0.0042 Score=66.08 Aligned_cols=28 Identities=14% Similarity=0.197 Sum_probs=24.7
Q ss_pred CCeEEEEEcCCCCChHHHHHHHhCCCCC
Q 037346 385 HGMRVAVCGTVGSGKSSCLSCILGGVPK 412 (1156)
Q Consensus 385 ~g~~~~ivG~~GsGKSTll~~i~g~~~~ 412 (1156)
++..+.|.||+|+|||||++.+...+..
T Consensus 51 ~~~~~ll~G~~G~GKT~la~~l~~~~~~ 78 (242)
T 3bos_A 51 GVQAIYLWGPVKSGRTHLIHAACARANE 78 (242)
T ss_dssp SCSEEEEECSTTSSHHHHHHHHHHHHHH
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHHHH
Confidence 6789999999999999999999876643
|
| >1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A | Back alignment and structure |
|---|
Probab=96.03 E-value=0.03 Score=63.63 Aligned_cols=37 Identities=22% Similarity=0.246 Sum_probs=29.8
Q ss_pred CccccceEE---eeCCeEEEEEcCCCCChHHHHHHHhCCCC
Q 037346 374 PTLRNINLK---VFHGMRVAVCGTVGSGKSSCLSCILGGVP 411 (1156)
Q Consensus 374 ~~l~~i~l~---i~~g~~~~ivG~~GsGKSTll~~i~g~~~ 411 (1156)
+.|+.+ +. +++|+++.|.|++|||||||...++....
T Consensus 49 ~~LD~~-Lg~GGl~~G~ii~I~G~pGsGKTtLal~la~~~~ 88 (356)
T 1u94_A 49 LSLDIA-LGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQ 88 (356)
T ss_dssp HHHHHH-TSSSSEETTSEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred HHHHHH-hccCCccCCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 446555 33 88999999999999999999988876543
|
| >2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax} | Back alignment and structure |
|---|
Probab=96.02 E-value=0.0021 Score=67.14 Aligned_cols=30 Identities=27% Similarity=0.506 Sum_probs=26.3
Q ss_pred EeeCCeEEEEEcCCCCChHHHHHHHhCCCC
Q 037346 382 KVFHGMRVAVCGTVGSGKSSCLSCILGGVP 411 (1156)
Q Consensus 382 ~i~~g~~~~ivG~~GsGKSTll~~i~g~~~ 411 (1156)
...+|.+++|+||+||||||+.+.|...++
T Consensus 8 ~~~~~~~i~l~G~sGsGKsTl~~~L~~~~~ 37 (204)
T 2qor_A 8 HMARIPPLVVCGPSGVGKGTLIKKVLSEFP 37 (204)
T ss_dssp -CCCCCCEEEECCTTSCHHHHHHHHHHHCT
T ss_pred ccccCCEEEEECCCCCCHHHHHHHHHHhCc
Confidence 356899999999999999999999998764
|
| >2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens} | Back alignment and structure |
|---|
Probab=95.98 E-value=0.0019 Score=73.50 Aligned_cols=39 Identities=26% Similarity=0.336 Sum_probs=33.5
Q ss_pred ceeeCCCCCCHHHHHHHHhhcccCCCceEEEcCeeCCCC
Q 037346 963 LVLRGRTGSGKSTLIQTLFRIVESTAGHILIDGKDISLI 1001 (1156)
Q Consensus 963 ~vL~G~SGsGKSTL~~lL~rl~~p~~G~I~idG~di~~i 1001 (1156)
++|.|++|||||||++.|.+...+.+|+|.|.+.|..+.
T Consensus 77 v~lvG~pgaGKSTLln~L~~~~~~~~~~v~V~~~dp~~~ 115 (349)
T 2www_A 77 VGLSGPPGAGKSTFIEYFGKMLTERGHKLSVLAVDPSSC 115 (349)
T ss_dssp EEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEECCC---
T ss_pred EEEEcCCCCCHHHHHHHHHHHhhhcCCeEEEEeecCCCC
Confidence 578899999999999999999999999999988877653
|
| >2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A* | Back alignment and structure |
|---|
Probab=95.97 E-value=0.0006 Score=71.01 Aligned_cols=67 Identities=15% Similarity=0.188 Sum_probs=36.4
Q ss_pred ceeeCCCCCCHHHHHHHHhh------cccCCCceEEEcCe--eCCCCCh--------HHHhhcCeeeccccccccccchh
Q 037346 963 LVLRGRTGSGKSTLIQTLFR------IVESTAGHILIDGK--DISLIGL--------HDLRTRLSIIPQDPTMFEGTTRS 1026 (1156)
Q Consensus 963 ~vL~G~SGsGKSTL~~lL~r------l~~p~~G~I~idG~--di~~i~~--------~~LR~~i~~VpQdp~LF~gTIr~ 1026 (1156)
++|.|++||||||+++.|.+ +.+|..|...++.. |-...+. ..+++....+.|+.++++.++.+
T Consensus 3 I~i~G~~GsGKsT~~~~L~~~l~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~vi~d~~~~~ 82 (205)
T 2jaq_A 3 IAIFGTVGAGKSTISAEISKKLGYEIFKEPVEENPYFEQYYKDLKKTVFKMQIYMLTARSKQLKQAKNLENIIFDRTLLE 82 (205)
T ss_dssp EEEECCTTSCHHHHHHHHHHHHCCEEECCCGGGCTTHHHHTTCHHHHHHHHHHHHHHHHHHHHC------CEEEESCTTT
T ss_pred EEEECCCccCHHHHHHHHHHhcCCcEEcccccccHHHHHHHhCccccchhHHHHHHHHHHHHHHHhhccCCEEEEeccch
Confidence 47889999999999999998 34554443322211 1111110 11233345667777888888877
Q ss_pred ccC
Q 037346 1027 NLD 1029 (1156)
Q Consensus 1027 Nl~ 1029 (1156)
|+.
T Consensus 83 ~~~ 85 (205)
T 2jaq_A 83 DPI 85 (205)
T ss_dssp HHH
T ss_pred hHH
Confidence 654
|
| >3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=95.96 E-value=0.0083 Score=65.97 Aligned_cols=23 Identities=26% Similarity=0.450 Sum_probs=20.3
Q ss_pred CceeeCCCCCCHHHHHHHHhhcc
Q 037346 962 PLVLRGRTGSGKSTLIQTLFRIV 984 (1156)
Q Consensus 962 ~~vL~G~SGsGKSTL~~lL~rl~ 984 (1156)
.+.|.|++|+|||||++++.+..
T Consensus 53 ~~ll~G~~GtGKT~la~~la~~~ 75 (285)
T 3h4m_A 53 GILLYGPPGTGKTLLAKAVATET 75 (285)
T ss_dssp EEEEESSSSSSHHHHHHHHHHHT
T ss_pred eEEEECCCCCcHHHHHHHHHHHh
Confidence 46788999999999999998865
|
| >2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A | Back alignment and structure |
|---|
Probab=95.96 E-value=0.0019 Score=74.99 Aligned_cols=42 Identities=21% Similarity=0.048 Sum_probs=36.9
Q ss_pred ccceEEeeCCeEEEEEcCCCCChHHHHHHHhCCCCCCCcEEEEc
Q 037346 377 RNINLKVFHGMRVAVCGTVGSGKSSCLSCILGGVPKESGIIRLC 420 (1156)
Q Consensus 377 ~~i~l~i~~g~~~~ivG~~GsGKSTll~~i~g~~~~~~G~i~~~ 420 (1156)
++++++ +|++++++|++||||||++..|++.+.+..|+|.+.
T Consensus 91 ~~i~l~--~~~vi~i~G~~GsGKTT~~~~LA~~l~~~g~~Vllv 132 (425)
T 2ffh_A 91 RLPVLK--DRNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLV 132 (425)
T ss_dssp CCCCCC--SSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEE
T ss_pred ccccCC--CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEe
Confidence 567777 899999999999999999999999999887777653
|
| >2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix} | Back alignment and structure |
|---|
Probab=95.92 E-value=0.0019 Score=66.37 Aligned_cols=36 Identities=25% Similarity=0.280 Sum_probs=30.2
Q ss_pred EeeCCeEEEEEcCCCCChHHHHHHHhCCCCCCCcEE
Q 037346 382 KVFHGMRVAVCGTVGSGKSSCLSCILGGVPKESGII 417 (1156)
Q Consensus 382 ~i~~g~~~~ivG~~GsGKSTll~~i~g~~~~~~G~i 417 (1156)
..++|.+++|+|++||||||+.+.|.+.+.+..|.+
T Consensus 9 ~~~~~~~i~l~G~~GsGKsT~~~~L~~~l~~~~~~~ 44 (186)
T 2yvu_A 9 CIEKGIVVWLTGLPGSGKTTIATRLADLLQKEGYRV 44 (186)
T ss_dssp CCSCCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCE
T ss_pred ccCCCcEEEEEcCCCCCHHHHHHHHHHHHHhcCCeE
Confidence 345789999999999999999999998877655544
|
| >2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=95.91 E-value=0.0034 Score=71.96 Aligned_cols=28 Identities=14% Similarity=0.367 Sum_probs=24.7
Q ss_pred EeeCCeEEEEEcCCCCChHHHHHHHhCC
Q 037346 382 KVFHGMRVAVCGTVGSGKSSCLSCILGG 409 (1156)
Q Consensus 382 ~i~~g~~~~ivG~~GsGKSTll~~i~g~ 409 (1156)
.+..|..++|||++|+|||||++.|.|.
T Consensus 18 ~i~~~~kvgIVG~pnvGKSTL~n~Ltg~ 45 (396)
T 2ohf_A 18 RFGTSLKIGIVGLPNVGKSTFFNVLTNS 45 (396)
T ss_dssp CSSSCCCEEEECCSSSSHHHHHHHHHC-
T ss_pred hccCCCEEEEECCCCCCHHHHHHHHHCC
Confidence 4567889999999999999999999987
|
| >1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2 | Back alignment and structure |
|---|
Probab=95.87 E-value=0.0037 Score=63.10 Aligned_cols=31 Identities=29% Similarity=0.380 Sum_probs=25.8
Q ss_pred CCceeeCCCCCCHHHHHHHHhhcccCCCceEEEcC
Q 037346 961 LPLVLRGRTGSGKSTLIQTLFRIVESTAGHILIDG 995 (1156)
Q Consensus 961 ~~~vL~G~SGsGKSTL~~lL~rl~~p~~G~I~idG 995 (1156)
..++|.|++||||||++++|.+.+.+ +.+|+
T Consensus 5 ~~i~l~G~~GsGKSTl~~~La~~l~~----~~id~ 35 (173)
T 1kag_A 5 RNIFLVGPMGAGKSTIGRQLAQQLNM----EFYDS 35 (173)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHHTTC----EEEEH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhCC----CEEec
Confidence 34688999999999999999998754 56765
|
| >1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F | Back alignment and structure |
|---|
Probab=95.84 E-value=0.0017 Score=71.99 Aligned_cols=42 Identities=14% Similarity=0.112 Sum_probs=35.0
Q ss_pred cc-ceEEeeCCeEEEEEcCCCCChHHHHHHHhCCCCCCCcEEEE
Q 037346 377 RN-INLKVFHGMRVAVCGTVGSGKSSCLSCILGGVPKESGIIRL 419 (1156)
Q Consensus 377 ~~-i~l~i~~g~~~~ivG~~GsGKSTll~~i~g~~~~~~G~i~~ 419 (1156)
++ ++++.+ |++++++|++|+||||++..|++.+.+..|++.+
T Consensus 89 ~~~i~~~~~-~~vi~i~G~~G~GKTT~~~~la~~~~~~g~~v~l 131 (297)
T 1j8m_F 89 EPKVIPDKI-PYVIMLVGVQGTGKTTTAGKLAYFYKKKGFKVGL 131 (297)
T ss_dssp CCCCSCSSS-SEEEEEECSSCSSTTHHHHHHHHHHHHTTCCEEE
T ss_pred ccccccCCC-CeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEE
Confidence 45 777766 9999999999999999999999998876555543
|
| >3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A* | Back alignment and structure |
|---|
Probab=95.84 E-value=0.0037 Score=71.56 Aligned_cols=45 Identities=16% Similarity=0.269 Sum_probs=31.5
Q ss_pred EEEEEEEEEcCCCCceeeCCCCCCHHHHHHHHhh--cccCCCceEEEcCe
Q 037346 949 NIRHLQVRYAPNLPLVLRGRTGSGKSTLIQTLFR--IVESTAGHILIDGK 996 (1156)
Q Consensus 949 ~~~~Vsf~Y~~~~~~vL~G~SGsGKSTL~~lL~r--l~~p~~G~I~idG~ 996 (1156)
.++++++..+ .+++.|++|||||||++.|.| +.++.+|.+.-.+.
T Consensus 26 ~l~~i~~~lp---~I~vvG~~~sGKSSLln~l~g~~~lp~~~~~vT~~p~ 72 (360)
T 3t34_A 26 ALPTLWDSLP---AIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPL 72 (360)
T ss_dssp CC----CCCC---EEEEECBTTSSHHHHHHHHHTSCCSCCCSSSCCCSCE
T ss_pred ccccccccCC---EEEEECCCCCcHHHHHHHHhCCCcCCCCCCcccCcce
Confidence 3556655543 478889999999999999999 77777776654443
|
| >4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A | Back alignment and structure |
|---|
Probab=95.79 E-value=0.0034 Score=66.88 Aligned_cols=48 Identities=17% Similarity=0.355 Sum_probs=30.2
Q ss_pred eEEEEEEEEEEc---CCCCceeeCCCCCCHHHHHHHHhhcccCCCceEEEcC
Q 037346 947 EVNIRHLQVRYA---PNLPLVLRGRTGSGKSTLIQTLFRIVESTAGHILIDG 995 (1156)
Q Consensus 947 ~I~~~~Vsf~Y~---~~~~~vL~G~SGsGKSTL~~lL~rl~~p~~G~I~idG 995 (1156)
.+.+.++++.+. ++.-+++.|++||||||+++.|...+.+ .+.+....
T Consensus 10 ~~~~~~~~~~~~~~~~g~~i~i~G~~GsGKsT~~~~l~~~l~~-~~~~~~~~ 60 (229)
T 4eaq_A 10 GVDLGTENLYFQSNAMSAFITFEGPEGSGKTTVINEVYHRLVK-DYDVIMTR 60 (229)
T ss_dssp ----------CCCCCCCEEEEEECCTTSCHHHHHHHHHHHHTT-TSCEEEEC
T ss_pred CcCccCCCeeEeecCCCeEEEEEcCCCCCHHHHHHHHHHHHhc-CCCceeec
Confidence 356666666554 4445678899999999999999999988 67776543
|
| >1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1 | Back alignment and structure |
|---|
Probab=95.77 E-value=0.0092 Score=70.20 Aligned_cols=36 Identities=25% Similarity=0.365 Sum_probs=29.9
Q ss_pred eEEEEEcCCCCChHHHHHHHhCCCC------------CCCcEEEEcCe
Q 037346 387 MRVAVCGTVGSGKSSCLSCILGGVP------------KESGIIRLCGT 422 (1156)
Q Consensus 387 ~~~~ivG~~GsGKSTll~~i~g~~~------------~~~G~i~~~g~ 422 (1156)
-.++|+|++|+|||||++.|+|... +..|.+.++|.
T Consensus 181 ~kvaivG~~gvGKSTLln~l~g~~~~~v~~~~gtT~d~~~~~i~~~g~ 228 (439)
T 1mky_A 181 IKVAIVGRPNVGKSTLFNAILNKERALVSPIPGTTRDPVDDEVFIDGR 228 (439)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTSTTEEECCCC------CCEEEEETTE
T ss_pred ceEEEECCCCCCHHHHHHHHhCCcccccCCCCCCcCCceEEEEEECCE
Confidence 3799999999999999999999853 55677777775
|
| >3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=95.75 E-value=0.021 Score=63.15 Aligned_cols=24 Identities=29% Similarity=0.391 Sum_probs=20.8
Q ss_pred CCceeeCCCCCCHHHHHHHHhhcc
Q 037346 961 LPLVLRGRTGSGKSTLIQTLFRIV 984 (1156)
Q Consensus 961 ~~~vL~G~SGsGKSTL~~lL~rl~ 984 (1156)
..+.|.||+|+||||+++++.+..
T Consensus 55 ~~vll~Gp~GtGKT~la~~la~~~ 78 (297)
T 3b9p_A 55 KGLLLFGPPGNGKTLLARAVATEC 78 (297)
T ss_dssp SEEEEESSSSSCHHHHHHHHHHHT
T ss_pred CeEEEECcCCCCHHHHHHHHHHHh
Confidence 346788999999999999999865
|
| >4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A* | Back alignment and structure |
|---|
Probab=95.74 E-value=0.0088 Score=70.77 Aligned_cols=54 Identities=19% Similarity=0.132 Sum_probs=35.1
Q ss_pred HHHHHHHHHHhhccCCCeeeeeCCC-CCcCHHHHHHHHHHHHhcCCCEEEEEccCCC
Q 037346 486 GQKQRIQIARPLYQDADIFLLDDPF-SPVDDHTGAHLFKFCWVSSSKTVIYATHQVE 541 (1156)
Q Consensus 486 GqkqRi~lAral~~~~~illlDep~-s~lD~~~~~~i~~~~~~~~~~tvi~vtH~~~ 541 (1156)
.|++-...+...+.++|++|+.-.. .++.... .++.+.+ ...++.+|++.+..+
T Consensus 88 ~~~~~~~~~~~~~~~ad~il~VvD~~~~~~~~d-~~l~~~l-~~~~~pvilV~NK~D 142 (456)
T 4dcu_A 88 FLAQIRQQAEIAMDEADVIIFMVNGREGVTAAD-EEVAKIL-YRTKKPVVLAVNKLD 142 (456)
T ss_dssp CHHHHHHHHHHHHHHCSEEEEEEESSSCSCHHH-HHHHHHH-TTCCSCEEEEEECC-
T ss_pred HHHHHHHHHHhhHhhCCEEEEEEeCCCCCChHH-HHHHHHH-HHcCCCEEEEEECcc
Confidence 4888888899999999987775443 3344443 3454443 345778888877654
|
| >2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=95.72 E-value=0.0014 Score=75.13 Aligned_cols=52 Identities=12% Similarity=0.141 Sum_probs=35.9
Q ss_pred ccEEEeeeEEEeCCCCCCCccccceEEeeCCeEEEEEcCCCCChHHHHHHHhCCCCCCCcE
Q 037346 356 TAIEIIDGSFSWDFSSPNPTLRNINLKVFHGMRVAVCGTVGSGKSSCLSCILGGVPKESGI 416 (1156)
Q Consensus 356 ~~i~~~~~~f~~~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKSTll~~i~g~~~~~~G~ 416 (1156)
+.+.+.|++..|. .+.++++++|+| +|+|++|+|||||++.|.|.-.+..|.
T Consensus 16 ~~v~~~~l~~~~~---~k~~~~~~~~~I------~vvG~~g~GKSTLln~L~~~~~~~~~~ 67 (361)
T 2qag_A 16 GYVGFANLPNQVH---RKSVKKGFEFTL------MVVGESGLGKSTLINSLFLTDLYPERV 67 (361)
T ss_dssp -----CCHHHHHH---THHHHHCCEECE------EECCCTTSCHHHHHHHHTTCCC-----
T ss_pred ceEEeccchHHhC---CeeecCCCCEEE------EEEcCCCCCHHHHHHHHhCCCCCCCCc
Confidence 4588888888875 346789999866 999999999999999999876554443
|
| >3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1} | Back alignment and structure |
|---|
Probab=95.69 E-value=0.0093 Score=70.08 Aligned_cols=130 Identities=8% Similarity=0.031 Sum_probs=72.9
Q ss_pred ccccceEEeeCCeEEEEEcCCCCChHHHHHHHhCCCCCCCcEEEEcCeEEEEecCCcCCCccHHHHhhcCCCCCHHHHHH
Q 037346 375 TLRNINLKVFHGMRVAVCGTVGSGKSSCLSCILGGVPKESGIIRLCGTKAYVAQSPWIQSGKIEENILFGKEMDRERYER 454 (1156)
Q Consensus 375 ~l~~i~l~i~~g~~~~ivG~~GsGKSTll~~i~g~~~~~~G~i~~~g~~~~v~Q~~~~~~~ti~eni~~~~~~~~~~~~~ 454 (1156)
-|+.+.=-+++|+++.|.|++|+|||||+.-++...-.. | ..+.|++=+- + .++-..+
T Consensus 186 ~LD~~lgGl~~G~liiIaG~pG~GKTtlal~ia~~~a~~-g-----~~vl~fSlEm-----s-----------~~ql~~R 243 (444)
T 3bgw_A 186 ELDRMTYGYKRRNFVLIAARPSMGKTAFALKQAKNMSDN-D-----DVVNLHSLEM-----G-----------KKENIKR 243 (444)
T ss_dssp HHHHHHSSBCSSCEEEEEECSSSSHHHHHHHHHHHHHHT-T-----CEEEEECSSS-----C-----------TTHHHHH
T ss_pred HHHhhcCCCCCCcEEEEEeCCCCChHHHHHHHHHHHHHc-C-----CEEEEEECCC-----C-----------HHHHHHH
Confidence 455554458999999999999999999988776533211 2 2455554321 0 0112222
Q ss_pred HHH-HhCCchhhhhCCCCCccccccCCCCCCHHHHHHHHHHHhhccCCCeeeeeCCCCCcCHHHHHHHHHHHHhcCCCE-
Q 037346 455 VLE-ACSLKKDLEVLPFGDQTIIGERGINLSGGQKQRIQIARPLYQDADIFLLDDPFSPVDDHTGAHLFKFCWVSSSKT- 532 (1156)
Q Consensus 455 ~~~-~~~l~~~~~~~~~g~~t~v~~~g~~LSgGqkqRi~lAral~~~~~illlDep~s~lD~~~~~~i~~~~~~~~~~t- 532 (1156)
.+. ..++. +..+..| . ..|+..+.+|+.-|...+.+.++++.|+|. ++...-....+.+....+..
T Consensus 244 ~~~~~~~i~--~~~l~~g------~--~~l~~~~~~~l~~a~~~l~~~~l~i~d~~~--~s~~~i~~~ir~l~~~~~~~~ 311 (444)
T 3bgw_A 244 LIVTAGSIN--AQKIKAA------R--RDFASEDWGKLSMAIGEISNSNINIFDKAG--QSVNYIWSKTRQTKRKNPGKR 311 (444)
T ss_dssp HHHHHSCCC--HHHHHHT------G--GGTCCSCHHHHHHHHHHHHTSCEEEECCSS--CBHHHHHHHHHHHHHHSCSSC
T ss_pred HHHHHcCCC--HHHHhcc------c--CCCCHHHHHHHHHHHHHHhcCCEEEECCCC--CCHHHHHHHHHHHHHHhCCCC
Confidence 222 12221 1111011 0 127888889998888888888999998874 44433222223332333444
Q ss_pred -EEEEcc
Q 037346 533 -VIYATH 538 (1156)
Q Consensus 533 -vi~vtH 538 (1156)
+|+|-+
T Consensus 312 ~lIVID~ 318 (444)
T 3bgw_A 312 VIVMIDY 318 (444)
T ss_dssp EEEEEEC
T ss_pred eEEEEec
Confidence 666544
|
| >2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A* | Back alignment and structure |
|---|
Probab=95.69 E-value=0.013 Score=58.52 Aligned_cols=24 Identities=25% Similarity=0.423 Sum_probs=21.8
Q ss_pred EEEEEcCCCCChHHHHHHHhCCCC
Q 037346 388 RVAVCGTVGSGKSSCLSCILGGVP 411 (1156)
Q Consensus 388 ~~~ivG~~GsGKSTll~~i~g~~~ 411 (1156)
.++|+|++|+|||||++.+.|...
T Consensus 5 ~v~lvG~~gvGKStL~~~l~~~~~ 28 (165)
T 2wji_A 5 EIALIGNPNVGKSTIFNALTGENV 28 (165)
T ss_dssp EEEEECSTTSSHHHHHHHHHCCSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCCe
Confidence 689999999999999999998643
|
| >2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=95.66 E-value=0.036 Score=57.72 Aligned_cols=44 Identities=16% Similarity=0.351 Sum_probs=31.7
Q ss_pred cCCCEEEEecCCcCCCHHHHHHHHHHHHHhcCCceEEEeecCccc
Q 037346 1068 KKSKVLVLDEATASVDTATDNQIQQTLRQHFSDCTVVTIAHRITS 1112 (1156)
Q Consensus 1068 r~~~ILiLDEaTS~LD~~te~~I~~~l~~~~~~~TvI~IaHrl~t 1112 (1156)
.++.+|++||+- .++.+....+.+.+.+...+..+|+++.+...
T Consensus 101 ~~~~vliiDe~~-~l~~~~~~~l~~~l~~~~~~~~~i~~~~~~~~ 144 (226)
T 2chg_A 101 APFKIIFLDEAD-ALTADAQAALRRTMEMYSKSCRFILSCNYVSR 144 (226)
T ss_dssp CSCEEEEEETGG-GSCHHHHHHHHHHHHHTTTTEEEEEEESCGGG
T ss_pred cCceEEEEeChh-hcCHHHHHHHHHHHHhcCCCCeEEEEeCChhh
Confidence 467899999975 46777777788888765555667777776543
|
| >1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A* | Back alignment and structure |
|---|
Probab=95.66 E-value=0.002 Score=67.79 Aligned_cols=34 Identities=32% Similarity=0.359 Sum_probs=30.2
Q ss_pred ceeeCCCCCCHHHHHHHHhhcccCCCc--eEEEcCe
Q 037346 963 LVLRGRTGSGKSTLIQTLFRIVESTAG--HILIDGK 996 (1156)
Q Consensus 963 ~vL~G~SGsGKSTL~~lL~rl~~p~~G--~I~idG~ 996 (1156)
++|.|++||||||+++.|.+.+.|..| .+.+||.
T Consensus 28 i~~~G~~GsGKsT~~~~l~~~l~~~~g~~~~~~~~d 63 (211)
T 1m7g_A 28 IWLTGLSASGKSTLAVELEHQLVRDRRVHAYRLDGD 63 (211)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHHHHHCCCEEEECHH
T ss_pred EEEECCCCCCHHHHHHHHHHHhccccCCcEEEECCh
Confidence 578899999999999999999988888 8888853
|
| >4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A* | Back alignment and structure |
|---|
Probab=95.64 E-value=0.011 Score=65.95 Aligned_cols=31 Identities=13% Similarity=0.088 Sum_probs=26.6
Q ss_pred CeEEEEEcCCCCChHHHHHHHhCCCCCCCcE
Q 037346 386 GMRVAVCGTVGSGKSSCLSCILGGVPKESGI 416 (1156)
Q Consensus 386 g~~~~ivG~~GsGKSTll~~i~g~~~~~~G~ 416 (1156)
...+.++||+|+||||++++|.+.+.+..|.
T Consensus 47 ~~~~ll~G~~GtGKt~la~~la~~~~~~~~~ 77 (311)
T 4fcw_A 47 IGSFLFLGPTGVGKTELAKTLAATLFDTEEA 77 (311)
T ss_dssp SEEEEEESCSSSSHHHHHHHHHHHHHSCGGG
T ss_pred ceEEEEECCCCcCHHHHHHHHHHHHcCCCcc
Confidence 3578999999999999999999988766553
|
| >3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A | Back alignment and structure |
|---|
Probab=95.61 E-value=0.0035 Score=75.81 Aligned_cols=58 Identities=21% Similarity=0.201 Sum_probs=33.2
Q ss_pred CCCceeeCCCCCCHHHHHHHHhhcccCCCceEEEcCeeCCCCChHHHhhcCeeecccc
Q 037346 960 NLPLVLRGRTGSGKSTLIQTLFRIVESTAGHILIDGKDISLIGLHDLRTRLSIIPQDP 1017 (1156)
Q Consensus 960 ~~~~vL~G~SGsGKSTL~~lL~rl~~p~~G~I~idG~di~~i~~~~LR~~i~~VpQdp 1017 (1156)
+..+.|.||+|+|||||+++|.+...+..|+|.++|..-..--....|+.++..+|..
T Consensus 108 g~~vll~Gp~GtGKTtlar~ia~~l~~~~~~i~~~~~~~~~~~~g~~~~~ig~~~~~~ 165 (543)
T 3m6a_A 108 GPILCLAGPPGVGKTSLAKSIAKSLGRKFVRISLGGVRDESEIRGHRRTYVGAMPGRI 165 (543)
T ss_dssp SCEEEEESSSSSSHHHHHHHHHHHHTCEEEEECCCC--------------------CH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhcCCCeEEEEecccchhhhhhhHHHHHhccCchHH
Confidence 3346788999999999999999999999999998885432212223345566666544
|
| >2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A* | Back alignment and structure |
|---|
Probab=95.53 E-value=0.006 Score=68.64 Aligned_cols=25 Identities=20% Similarity=0.262 Sum_probs=19.8
Q ss_pred cCCCCceeeCCCCCCHHHHHHHHhh
Q 037346 958 APNLPLVLRGRTGSGKSTLIQTLFR 982 (1156)
Q Consensus 958 ~~~~~~vL~G~SGsGKSTL~~lL~r 982 (1156)
+++.-+.|.|++|||||||+.-+..
T Consensus 96 ~~g~i~~i~G~~gsGKT~la~~la~ 120 (322)
T 2i1q_A 96 ESQSVTEFAGVFGSGKTQIMHQSCV 120 (322)
T ss_dssp ETTEEEEEEESTTSSHHHHHHHHHH
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHH
Confidence 3454456779999999999988875
|
| >2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae} | Back alignment and structure |
|---|
Probab=95.46 E-value=0.0043 Score=67.17 Aligned_cols=38 Identities=16% Similarity=0.237 Sum_probs=29.9
Q ss_pred EeeCCeEEEEEcCCCCChHHHHHHHhCCCCCCCcEEEEcC
Q 037346 382 KVFHGMRVAVCGTVGSGKSSCLSCILGGVPKESGIIRLCG 421 (1156)
Q Consensus 382 ~i~~g~~~~ivG~~GsGKSTll~~i~g~~~~~~G~i~~~g 421 (1156)
..++|.++.|+|++||||||+.+.|.+.+. .|.+.+++
T Consensus 28 ~~~~~~~i~l~G~~GsGKSTla~~L~~~l~--~~~~~~~~ 65 (253)
T 2p5t_B 28 SSKQPIAILLGGQSGAGKTTIHRIKQKEFQ--GNIVIIDG 65 (253)
T ss_dssp CCSSCEEEEEESCGGGTTHHHHHHHHHHTT--TCCEEECG
T ss_pred cccCCeEEEEECCCCCCHHHHHHHHHHhcC--CCcEEEec
Confidence 456778999999999999999999998764 23444443
|
| >2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A* | Back alignment and structure |
|---|
Probab=95.45 E-value=0.035 Score=62.25 Aligned_cols=28 Identities=18% Similarity=0.153 Sum_probs=25.3
Q ss_pred EeeCCeEEEEEcCCCCChHHHHHHHhCC
Q 037346 382 KVFHGMRVAVCGTVGSGKSSCLSCILGG 409 (1156)
Q Consensus 382 ~i~~g~~~~ivG~~GsGKSTll~~i~g~ 409 (1156)
-+++|+++.|.|++|||||||+..++..
T Consensus 94 Gl~~g~i~~i~G~~gsGKT~la~~la~~ 121 (322)
T 2i1q_A 94 GLESQSVTEFAGVFGSGKTQIMHQSCVN 121 (322)
T ss_dssp SEETTEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CccCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 5789999999999999999999888753
|
| >2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=95.44 E-value=0.011 Score=60.10 Aligned_cols=22 Identities=27% Similarity=0.522 Sum_probs=20.7
Q ss_pred EEEEEcCCCCChHHHHHHHhCC
Q 037346 388 RVAVCGTVGSGKSSCLSCILGG 409 (1156)
Q Consensus 388 ~~~ivG~~GsGKSTll~~i~g~ 409 (1156)
.++|+|++|+|||||++.+.|.
T Consensus 9 ~i~lvG~~gvGKStL~~~l~~~ 30 (188)
T 2wjg_A 9 EIALIGNPNVGKSTIFNALTGE 30 (188)
T ss_dssp EEEEECSTTSSHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 6899999999999999999985
|
| >2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=95.43 E-value=0.0057 Score=63.62 Aligned_cols=21 Identities=29% Similarity=0.574 Sum_probs=20.2
Q ss_pred EEEEEcCCCCChHHHHHHHhC
Q 037346 388 RVAVCGTVGSGKSSCLSCILG 408 (1156)
Q Consensus 388 ~~~ivG~~GsGKSTll~~i~g 408 (1156)
+++|+|++||||||+.+.|.+
T Consensus 3 ~i~i~G~~GsGKSTl~~~L~~ 23 (204)
T 2if2_A 3 RIGLTGNIGCGKSTVAQMFRE 23 (204)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHH
Confidence 689999999999999999998
|
| >2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A* | Back alignment and structure |
|---|
Probab=95.43 E-value=0.015 Score=61.29 Aligned_cols=51 Identities=16% Similarity=0.133 Sum_probs=34.0
Q ss_pred CCCEEEEecCCcCCCHHHHHHHHHHHHHhcCCceEEEeecCc-----------ccccccCEEEEEe
Q 037346 1069 KSKVLVLDEATASVDTATDNQIQQTLRQHFSDCTVVTIAHRI-----------TSVLDSAMVLLLN 1123 (1156)
Q Consensus 1069 ~~~ILiLDEaTS~LD~~te~~I~~~l~~~~~~~TvI~IaHrl-----------~ti~~~D~I~Vl~ 1123 (1156)
+++++++||+.- ++.+.-+.+ ..|.+ .+.+||++.|+. ..+.-||+|..|.
T Consensus 89 ~~dvViIDEaQ~-l~~~~ve~l-~~L~~--~gi~Vil~Gl~~df~~~~F~~~~~Ll~lAD~V~el~ 150 (223)
T 2b8t_A 89 ETKVIGIDEVQF-FDDRICEVA-NILAE--NGFVVIISGLDKNFKGEPFGPIAKLFTYADKITKLT 150 (223)
T ss_dssp TCCEEEECSGGG-SCTHHHHHH-HHHHH--TTCEEEEECCSBCTTSSBCTTHHHHHHHCSEEEECC
T ss_pred CCCEEEEecCcc-CcHHHHHHH-HHHHh--CCCeEEEEeccccccCCcCCCcHHHHHHhheEeecc
Confidence 579999999974 665533333 23333 388999999942 3344688888764
|
| >3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A* | Back alignment and structure |
|---|
Probab=95.41 E-value=0.044 Score=60.87 Aligned_cols=24 Identities=21% Similarity=0.493 Sum_probs=20.8
Q ss_pred CceeeCCCCCCHHHHHHHHhhccc
Q 037346 962 PLVLRGRTGSGKSTLIQTLFRIVE 985 (1156)
Q Consensus 962 ~~vL~G~SGsGKSTL~~lL~rl~~ 985 (1156)
++.|.|++|+||||+++.+.+.+.
T Consensus 69 ~vll~G~~GtGKT~la~~la~~l~ 92 (309)
T 3syl_A 69 HMSFTGNPGTGKTTVALKMAGLLH 92 (309)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHHH
Confidence 467889999999999999888764
|
| >1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X | Back alignment and structure |
|---|
Probab=95.41 E-value=0.0057 Score=68.07 Aligned_cols=26 Identities=31% Similarity=0.341 Sum_probs=23.2
Q ss_pred CCeEEEEEcCCCCChHHHHHHHhCCC
Q 037346 385 HGMRVAVCGTVGSGKSSCLSCILGGV 410 (1156)
Q Consensus 385 ~g~~~~ivG~~GsGKSTll~~i~g~~ 410 (1156)
++.+++|+|++|+|||||++.|+|.-
T Consensus 7 r~~~VaIvG~~nvGKSTLln~L~g~~ 32 (301)
T 1ega_A 7 YCGFIAIVGRPNVGKSTLLNKLLGQK 32 (301)
T ss_dssp EEEEEEEECSSSSSHHHHHHHHHTCS
T ss_pred cCCEEEEECCCCCCHHHHHHHHHCCC
Confidence 44589999999999999999999973
|
| >1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A | Back alignment and structure |
|---|
Probab=95.36 E-value=0.0052 Score=62.39 Aligned_cols=26 Identities=19% Similarity=0.254 Sum_probs=23.3
Q ss_pred eEEEEEcCCCCChHHHHHHHhCCCCC
Q 037346 387 MRVAVCGTVGSGKSSCLSCILGGVPK 412 (1156)
Q Consensus 387 ~~~~ivG~~GsGKSTll~~i~g~~~~ 412 (1156)
..++|+|++|||||||++.|++.+++
T Consensus 7 ~~i~i~G~sGsGKTTl~~~l~~~l~~ 32 (174)
T 1np6_A 7 PLLAFAAWSGTGKTTLLKKLIPALCA 32 (174)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHHH
T ss_pred eEEEEEeCCCCCHHHHHHHHHHhccc
Confidence 58999999999999999999987654
|
| >3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=95.35 E-value=0.027 Score=62.60 Aligned_cols=33 Identities=27% Similarity=0.439 Sum_probs=25.9
Q ss_pred CCceeeCCCCCCHHHHHHHHhhcccCCCceEEEcC
Q 037346 961 LPLVLRGRTGSGKSTLIQTLFRIVESTAGHILIDG 995 (1156)
Q Consensus 961 ~~~vL~G~SGsGKSTL~~lL~rl~~p~~G~I~idG 995 (1156)
..+.|.||+|+|||||++++.+... .+-+.+++
T Consensus 50 ~~vLL~Gp~GtGKT~la~ala~~~~--~~~i~v~~ 82 (301)
T 3cf0_A 50 KGVLFYGPPGCGKTLLAKAIANECQ--ANFISIKG 82 (301)
T ss_dssp SEEEEECSSSSSHHHHHHHHHHHTT--CEEEEECH
T ss_pred ceEEEECCCCcCHHHHHHHHHHHhC--CCEEEEEh
Confidence 3467889999999999999998764 45565554
|
| >2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus} | Back alignment and structure |
|---|
Probab=95.33 E-value=0.015 Score=68.47 Aligned_cols=159 Identities=13% Similarity=0.210 Sum_probs=84.3
Q ss_pred EEEEEEEEcCCCCceeeCCCCCCHHHHHHHHhhcccCCCc-eE-EEcCeeCCCCChHHHhhcCe----eecccccccccc
Q 037346 950 IRHLQVRYAPNLPLVLRGRTGSGKSTLIQTLFRIVESTAG-HI-LIDGKDISLIGLHDLRTRLS----IIPQDPTMFEGT 1023 (1156)
Q Consensus 950 ~~~Vsf~Y~~~~~~vL~G~SGsGKSTL~~lL~rl~~p~~G-~I-~idG~di~~i~~~~LR~~i~----~VpQdp~LF~gT 1023 (1156)
++++.-..+++.-++|.||+|+||||++.-++.-.-...| .+ ++.. +.+.+++..++- -|+.+ .
T Consensus 190 LD~~lgGl~~G~l~ii~G~pg~GKT~lal~ia~~~a~~~g~~vl~~sl----E~~~~~l~~R~~~~~~~i~~~------~ 259 (444)
T 2q6t_A 190 LDQLIGTLGPGSLNIIAARPAMGKTAFALTIAQNAALKEGVGVGIYSL----EMPAAQLTLRMMCSEARIDMN------R 259 (444)
T ss_dssp HHHHHCCCCTTCEEEEEECTTSCHHHHHHHHHHHHHHTTCCCEEEEES----SSCHHHHHHHHHHHHTTCCTT------T
T ss_pred hhhhcCCcCCCcEEEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEEEC----CCCHHHHHHHHHHHHcCCCHH------H
Confidence 3444333456666678899999999999988876643333 33 3433 356666666531 12211 1
Q ss_pred chhccCCCCCCCHHH---HHHHHHHcCCC-hHHHhhcCCcc-----ccccccc--cCCCEEEEecCCcCCCH------HH
Q 037346 1024 TRSNLDPLEEHADEQ---IWEALDKCQLG-DEVRKKKGKLD-----SQGRVLL--KKSKVLVLDEATASVDT------AT 1086 (1156)
Q Consensus 1024 Ir~Nl~~~~~~~dee---i~~al~~~~l~-~~i~~lp~gl~-----s~ARALL--r~~~ILiLDEaTS~LD~------~t 1086 (1156)
++. +..++++ +.++++...-. -++.. +.++. ..+|.+. .+++++|+|..+.-.+. ++
T Consensus 260 l~~-----g~l~~~~~~~~~~a~~~l~~~~l~i~d-~~~~s~~~l~~~~~~l~~~~~~~lIvID~l~~~~~~~~~~~~~~ 333 (444)
T 2q6t_A 260 VRL-----GQLTDRDFSRLVDVASRLSEAPIYIDD-TPDLTLMEVRARARRLVSQNQVGLIIIDYLQLMSGPGSGKSGEN 333 (444)
T ss_dssp CCG-----GGCCHHHHHHHHHHHHHHHTSCEEEEC-CTTCBHHHHHHHHHHHHHHSCCCEEEEECGGGCBCC-------C
T ss_pred HhC-----CCCCHHHHHHHHHHHHHHhcCCEEEEC-CCCCCHHHHHHHHHHHHHHcCCCEEEEcChhhcCCCcCCCCCCC
Confidence 111 1234444 33333322111 11111 11111 1145554 36999999999865433 12
Q ss_pred -H---HHHHHHHHHhc--CCceEEEeecC-------------cc-------cccccCEEEEEeC
Q 037346 1087 -D---NQIQQTLRQHF--SDCTVVTIAHR-------------IT-------SVLDSAMVLLLNH 1124 (1156)
Q Consensus 1087 -e---~~I~~~l~~~~--~~~TvI~IaHr-------------l~-------ti~~~D~I~Vl~~ 1124 (1156)
. ..+.+.|+.+. .+++||+++|= ++ .-.+||.|+.|..
T Consensus 334 r~~~i~~i~~~Lk~lAke~~v~vi~lsql~r~~e~r~~~~p~l~dlr~Sg~ie~~aD~vi~L~r 397 (444)
T 2q6t_A 334 RQQEIAAISRGLKALARELGIPIIALSQLSRAVEARPNKRPMLSDLRESGSIEQDADLVMFIYR 397 (444)
T ss_dssp HHHHHHHHHHHHHHHHHHHTSCEEEEEECCGGGGSSSSCSCCGGGGGGGCTTGGGCSEEEEEEE
T ss_pred HHHHHHHHHHHHHHHHHHhCCeEEEEecCCcccccCCCCCCChHHhcchhHHHHhCCEEEEEec
Confidence 1 23444454433 28999999981 11 1236999999953
|
| >2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B* | Back alignment and structure |
|---|
Probab=95.27 E-value=0.0086 Score=61.10 Aligned_cols=25 Identities=24% Similarity=0.496 Sum_probs=20.8
Q ss_pred EEEEEcCCCCChHHHHHHHhCCCCC
Q 037346 388 RVAVCGTVGSGKSSCLSCILGGVPK 412 (1156)
Q Consensus 388 ~~~ivG~~GsGKSTll~~i~g~~~~ 412 (1156)
.++|+|++|+|||||++.+.|...+
T Consensus 4 kv~ivG~~gvGKStLl~~l~~~~~~ 28 (184)
T 2zej_A 4 KLMIVGNTGSGKTTLLQQLMKTKKS 28 (184)
T ss_dssp EEEEESCTTSSHHHHHHHHTCC---
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCc
Confidence 5899999999999999999997544
|
| >2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A* | Back alignment and structure |
|---|
Probab=95.20 E-value=0.0036 Score=70.34 Aligned_cols=38 Identities=24% Similarity=0.325 Sum_probs=33.8
Q ss_pred CccccceEEeeCCeE--EEEEcCCCCChHHHHHHHhCCCC
Q 037346 374 PTLRNINLKVFHGMR--VAVCGTVGSGKSSCLSCILGGVP 411 (1156)
Q Consensus 374 ~~l~~i~l~i~~g~~--~~ivG~~GsGKSTll~~i~g~~~ 411 (1156)
.+++.+++.+++|+. ++|+|++||||||+.++|++.+.
T Consensus 10 ~il~~l~~~i~~g~~~~i~l~G~~G~GKTTl~~~la~~l~ 49 (359)
T 2ga8_A 10 DVLQLLDNRIEDNYRVCVILVGSPGSGKSTIAEELCQIIN 49 (359)
T ss_dssp HHHHHHHHTTTTCSCEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccCCeeEEEEECCCCCcHHHHHHHHHHHhC
Confidence 367888899999998 99999999999999999997653
|
| >3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=95.13 E-value=0.0096 Score=60.80 Aligned_cols=26 Identities=27% Similarity=0.261 Sum_probs=22.8
Q ss_pred eCCeEEEEEcCCCCChHHHHHHHhCC
Q 037346 384 FHGMRVAVCGTVGSGKSSCLSCILGG 409 (1156)
Q Consensus 384 ~~g~~~~ivG~~GsGKSTll~~i~g~ 409 (1156)
.+|.+++|+|++||||||+.+.|...
T Consensus 2 ~~g~~I~l~G~~GsGKST~~~~La~~ 27 (186)
T 3cm0_A 2 DVGQAVIFLGPPGAGKGTQASRLAQE 27 (186)
T ss_dssp -CEEEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 46889999999999999999999854
|
| >1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B* | Back alignment and structure |
|---|
Probab=95.10 E-value=0.05 Score=62.05 Aligned_cols=44 Identities=16% Similarity=0.176 Sum_probs=32.1
Q ss_pred cCCCEEEEecCCcCCCHHHHHHHHHHHHHhcCCceEEEeecCccc
Q 037346 1068 KKSKVLVLDEATASVDTATDNQIQQTLRQHFSDCTVVTIAHRITS 1112 (1156)
Q Consensus 1068 r~~~ILiLDEaTS~LD~~te~~I~~~l~~~~~~~TvI~IaHrl~t 1112 (1156)
.+++|+++||+- .++.+....+.+.+++...+..+|.++++...
T Consensus 118 ~~~~vliiDe~~-~l~~~~~~~Ll~~le~~~~~~~~Il~~~~~~~ 161 (373)
T 1jr3_A 118 GRFKVYLIDEVH-MLSRHSFNALLKTLEEPPEHVKFLLATTDPQK 161 (373)
T ss_dssp SSSEEEEEECGG-GSCHHHHHHHHHHHHSCCSSEEEEEEESCGGG
T ss_pred CCeEEEEEECcc-hhcHHHHHHHHHHHhcCCCceEEEEEeCChHh
Confidence 367899999975 46777777888888765445567777777653
|
| >2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A* | Back alignment and structure |
|---|
Probab=95.03 E-value=0.024 Score=62.78 Aligned_cols=28 Identities=21% Similarity=0.240 Sum_probs=25.3
Q ss_pred EeeCCeEEEEEcCCCCChHHHHHHHhCC
Q 037346 382 KVFHGMRVAVCGTVGSGKSSCLSCILGG 409 (1156)
Q Consensus 382 ~i~~g~~~~ivG~~GsGKSTll~~i~g~ 409 (1156)
-+++|..+.|.||.|||||||...++..
T Consensus 119 Gi~~gsviLI~GpPGsGKTtLAlqlA~~ 146 (331)
T 2vhj_A 119 HRYASGMVIVTGKGNSGKTPLVHALGEA 146 (331)
T ss_dssp EEEESEEEEEECSCSSSHHHHHHHHHHH
T ss_pred CCCCCcEEEEEcCCCCCHHHHHHHHHHh
Confidence 5788999999999999999999998754
|
| >1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A | Back alignment and structure |
|---|
Probab=95.00 E-value=0.01 Score=60.19 Aligned_cols=35 Identities=29% Similarity=0.456 Sum_probs=27.9
Q ss_pred ceeeCCCCCCHHHHHHHHhhcccCC---CceEEEcCee
Q 037346 963 LVLRGRTGSGKSTLIQTLFRIVEST---AGHILIDGKD 997 (1156)
Q Consensus 963 ~vL~G~SGsGKSTL~~lL~rl~~p~---~G~I~idG~d 997 (1156)
+++.|+||||||||++.|.+.+.+. -|.|..++.+
T Consensus 9 i~i~G~sGsGKTTl~~~l~~~l~~~g~~v~~i~~~~~~ 46 (174)
T 1np6_A 9 LAFAAWSGTGKTTLLKKLIPALCARGIRPGLIKHTHHD 46 (174)
T ss_dssp EEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEEECCC-
T ss_pred EEEEeCCCCCHHHHHHHHHHhccccCCceeEEeeCCCc
Confidence 4677999999999999999987644 3778887754
|
| >3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=94.99 E-value=0.0091 Score=62.04 Aligned_cols=25 Identities=36% Similarity=0.372 Sum_probs=22.5
Q ss_pred CeEEEEEcCCCCChHHHHHHHhCCC
Q 037346 386 GMRVAVCGTVGSGKSSCLSCILGGV 410 (1156)
Q Consensus 386 g~~~~ivG~~GsGKSTll~~i~g~~ 410 (1156)
..+++|+|++||||||+.+.|.+.+
T Consensus 18 ~~~I~l~G~~GsGKSTla~~L~~~l 42 (202)
T 3t61_A 18 PGSIVVMGVSGSGKSSVGEAIAEAC 42 (202)
T ss_dssp SSCEEEECSTTSCHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 4589999999999999999998765
|
| >2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix} | Back alignment and structure |
|---|
Probab=94.95 E-value=0.025 Score=64.81 Aligned_cols=28 Identities=18% Similarity=0.281 Sum_probs=24.6
Q ss_pred eCCeEEEEEcCCCCChHHHHHHHhCCCC
Q 037346 384 FHGMRVAVCGTVGSGKSSCLSCILGGVP 411 (1156)
Q Consensus 384 ~~g~~~~ivG~~GsGKSTll~~i~g~~~ 411 (1156)
..+..+.|.||+|+|||||++.+...+.
T Consensus 42 ~~~~~vll~G~~G~GKT~l~~~~~~~~~ 69 (387)
T 2v1u_A 42 EKPSNALLYGLTGTGKTAVARLVLRRLE 69 (387)
T ss_dssp CCCCCEEECBCTTSSHHHHHHHHHHHHH
T ss_pred CCCCcEEEECCCCCCHHHHHHHHHHHHH
Confidence 4567899999999999999999998764
|
| >1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A* | Back alignment and structure |
|---|
Probab=94.93 E-value=0.021 Score=60.30 Aligned_cols=24 Identities=29% Similarity=0.383 Sum_probs=21.6
Q ss_pred EEEEEcCCCCChHHHHHHHhCCCC
Q 037346 388 RVAVCGTVGSGKSSCLSCILGGVP 411 (1156)
Q Consensus 388 ~~~ivG~~GsGKSTll~~i~g~~~ 411 (1156)
.+.|.||.|+|||||++.+...+.
T Consensus 47 ~~ll~G~~G~GKT~l~~~~~~~~~ 70 (250)
T 1njg_A 47 AYLFSGTRGVGKTSIARLLAKGLN 70 (250)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhc
Confidence 799999999999999999987654
|
| >1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1 | Back alignment and structure |
|---|
Probab=94.92 E-value=0.11 Score=59.23 Aligned_cols=136 Identities=18% Similarity=0.200 Sum_probs=71.3
Q ss_pred cCCCCceeeCCCCCCHHHHHHHHhhcccCCCce-EEEcCeeCCCCChHHHh-hcCeeeccccccccccchhccCCCCCCC
Q 037346 958 APNLPLVLRGRTGSGKSTLIQTLFRIVESTAGH-ILIDGKDISLIGLHDLR-TRLSIIPQDPTMFEGTTRSNLDPLEEHA 1035 (1156)
Q Consensus 958 ~~~~~~vL~G~SGsGKSTL~~lL~rl~~p~~G~-I~idG~di~~i~~~~LR-~~i~~VpQdp~LF~gTIr~Nl~~~~~~~ 1035 (1156)
+++.-+.|.|++|+|||||+..+..-.....|. ++||... +.+.++ +++++=+ +|+....+.+
T Consensus 72 ~~G~li~I~G~pGsGKTtlal~la~~~~~~g~~vlyi~~E~----s~~~~~a~~~g~d~-----------~~l~i~~~~~ 136 (366)
T 1xp8_A 72 PRGRITEIYGPESGGKTTLALAIVAQAQKAGGTCAFIDAEH----ALDPVYARALGVNT-----------DELLVSQPDN 136 (366)
T ss_dssp ETTSEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSC----CCCHHHHHHTTCCG-----------GGCEEECCSS
T ss_pred cCCcEEEEEcCCCCChHHHHHHHHHHHHHCCCeEEEEECCC----ChhHHHHHHcCCCH-----------HHceeecCCc
Confidence 445555677999999999998776544323333 4555432 222222 2333321 2222222233
Q ss_pred HHHHHHHHHHcCCChHHHhhcCCccccccccccCCCEEEEecCCcCCC---H----------HHHHHHHHHHHHh-----
Q 037346 1036 DEQIWEALDKCQLGDEVRKKKGKLDSQGRVLLKKSKVLVLDEATASVD---T----------ATDNQIQQTLRQH----- 1097 (1156)
Q Consensus 1036 deei~~al~~~~l~~~i~~lp~gl~s~ARALLr~~~ILiLDEaTS~LD---~----------~te~~I~~~l~~~----- 1097 (1156)
-+++.+.++.. + | -.+++++|+|..++-.- . ..++.+.+.++++
T Consensus 137 ~e~~l~~l~~l-----~-----------~--~~~~~lVVIDsl~~l~~~~e~~g~~gd~~~~~~~r~~~~~lr~L~~~a~ 198 (366)
T 1xp8_A 137 GEQALEIMELL-----V-----------R--SGAIDVVVVDSVAALTPRAEIEGDMGDSLPGLQARLMSQALRKLTAILS 198 (366)
T ss_dssp HHHHHHHHHHH-----H-----------T--TTCCSEEEEECTTTCCCSTTC--------CCHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHH-----H-----------h--cCCCCEEEEeChHHhccccccccccccchhhHHHHHHHHHHHHHHHHHH
Confidence 34443333211 1 0 02579999999987541 1 1123455555554
Q ss_pred cCCceEEEeecCcccc-----------------cccCEEEEEeCcE
Q 037346 1098 FSDCTVVTIAHRITSV-----------------LDSAMVLLLNHGL 1126 (1156)
Q Consensus 1098 ~~~~TvI~IaHrl~ti-----------------~~~D~I~Vl~~G~ 1126 (1156)
..++|||++.|=-..+ ..||.++.+..++
T Consensus 199 ~~~~~VI~~nq~~~~~~~~fg~p~~~~gg~al~~~a~~rl~L~r~~ 244 (366)
T 1xp8_A 199 KTGTAAIFINQVREKIGVMYGNPETTTGGRALKFYASVRLDVRKIG 244 (366)
T ss_dssp TTCCEEEEEEEC---------------CHHHHHHHCSEEEEEEEES
T ss_pred HcCCEEEEEEecccccCcccCCccccCCcchhhheeeEEEEEEecc
Confidence 2478999988843211 2378888887655
|
| >2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A | Back alignment and structure |
|---|
Probab=94.89 E-value=0.011 Score=59.56 Aligned_cols=25 Identities=32% Similarity=0.546 Sum_probs=21.4
Q ss_pred CCCceeeCCCCCCHHHHHHHHhhcc
Q 037346 960 NLPLVLRGRTGSGKSTLIQTLFRIV 984 (1156)
Q Consensus 960 ~~~~vL~G~SGsGKSTL~~lL~rl~ 984 (1156)
+..+++.|++|+|||||++.|.+..
T Consensus 4 ~~ki~ivG~~g~GKStLl~~l~~~~ 28 (172)
T 2gj8_A 4 GMKVVIAGRPNAGKSSLLNALAGRE 28 (172)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHTSC
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCC
Confidence 3457899999999999999999864
|
| >3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=94.88 E-value=0.0082 Score=62.36 Aligned_cols=33 Identities=30% Similarity=0.555 Sum_probs=26.5
Q ss_pred CceeeCCCCCCHHHHHHHHhhcccCCCceEEEcCeeC
Q 037346 962 PLVLRGRTGSGKSTLIQTLFRIVESTAGHILIDGKDI 998 (1156)
Q Consensus 962 ~~vL~G~SGsGKSTL~~lL~rl~~p~~G~I~idG~di 998 (1156)
.++|.|++||||||+++.|.+.+ |...+|+-++
T Consensus 20 ~I~l~G~~GsGKSTla~~L~~~l----g~~~i~~d~~ 52 (202)
T 3t61_A 20 SIVVMGVSGSGKSSVGEAIAEAC----GYPFIEGDAL 52 (202)
T ss_dssp CEEEECSTTSCHHHHHHHHHHHH----TCCEEEGGGG
T ss_pred EEEEECCCCCCHHHHHHHHHHHh----CCEEEeCCcC
Confidence 36788999999999999998876 5667766444
|
| >1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A | Back alignment and structure |
|---|
Probab=94.85 E-value=0.012 Score=60.27 Aligned_cols=77 Identities=22% Similarity=0.400 Sum_probs=50.9
Q ss_pred CCceeeCCCCCCHHHHHHHHhhccc-------------CCCceEEEcCeeCCCCChHHHhhcCeeeccccccccccchhc
Q 037346 961 LPLVLRGRTGSGKSTLIQTLFRIVE-------------STAGHILIDGKDISLIGLHDLRTRLSIIPQDPTMFEGTTRSN 1027 (1156)
Q Consensus 961 ~~~vL~G~SGsGKSTL~~lL~rl~~-------------p~~G~I~idG~di~~i~~~~LR~~i~~VpQdp~LF~gTIr~N 1027 (1156)
.|++|.||||||||||++.|+.-++ |..|+ +||+|---++.++..+.+ -++-++-.+.+-.|
T Consensus 2 RpIVi~GPSG~GK~Tl~~~L~~~~~~~~~~svs~TTR~pR~gE--~~G~dY~Fvs~~eF~~~i---~~g~flE~~~~~g~ 76 (186)
T 1ex7_A 2 RPIVISGPSGTGKSTLLKKLFAEYPDSFGFSVSSTTRTPRAGE--VNGKDYNFVSVDEFKSMI---KNNEFIEWAQFSGN 76 (186)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHCTTTEEECCCEECSCCCTTC--CBTTTBEECCHHHHHHHH---HTTCEEEEEEETTE
T ss_pred CEEEEECCCCCCHHHHHHHHHHhCCCCeEEEEEEeccCCCCCC--cCCceeEeecHHHHHHHH---HcCCEEEEEEEcCc
Confidence 4688999999999999999875432 34565 488887777777776654 55656655555555
Q ss_pred cCCCCCCCHHHHHHHHHH
Q 037346 1028 LDPLEEHADEQIWEALDK 1045 (1156)
Q Consensus 1028 l~~~~~~~deei~~al~~ 1045 (1156)
. ++ .+-+++.++++.
T Consensus 77 ~-YG--t~~~~v~~~l~~ 91 (186)
T 1ex7_A 77 Y-YG--STVASVKQVSKS 91 (186)
T ss_dssp E-EE--EEHHHHHHHHHH
T ss_pred e-ee--eecceeeehhhC
Confidence 3 11 124556665544
|
| >4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A* | Back alignment and structure |
|---|
Probab=94.83 E-value=0.0041 Score=73.59 Aligned_cols=48 Identities=15% Similarity=0.335 Sum_probs=28.2
Q ss_pred ccccccCCCEEEEecC-CcCCCHHHHHHHHHHHHHhcCCceEEEeecCcccc
Q 037346 1063 GRVLLKKSKVLVLDEA-TASVDTATDNQIQQTLRQHFSDCTVVTIAHRITSV 1113 (1156)
Q Consensus 1063 ARALLr~~~ILiLDEa-TS~LD~~te~~I~~~l~~~~~~~TvI~IaHrl~ti 1113 (1156)
++..+++++++|+... +.++... +..+.+.+++ .++.+|+|.++.+..
T Consensus 96 ~~~~~~~ad~il~VvD~~~~~~~~-d~~l~~~l~~--~~~pvilV~NK~D~~ 144 (456)
T 4dcu_A 96 AEIAMDEADVIIFMVNGREGVTAA-DEEVAKILYR--TKKPVVLAVNKLDNT 144 (456)
T ss_dssp HHHHHHHCSEEEEEEESSSCSCHH-HHHHHHHHTT--CCSCEEEEEECC---
T ss_pred HHhhHhhCCEEEEEEeCCCCCChH-HHHHHHHHHH--cCCCEEEEEECccch
Confidence 3445566666655444 4445444 4566667765 478899999887654
|
| >3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A | Back alignment and structure |
|---|
Probab=94.76 E-value=0.02 Score=63.32 Aligned_cols=22 Identities=36% Similarity=0.530 Sum_probs=19.5
Q ss_pred ceeeCCCCCCHHHHHHHHhhcc
Q 037346 963 LVLRGRTGSGKSTLIQTLFRIV 984 (1156)
Q Consensus 963 ~vL~G~SGsGKSTL~~lL~rl~ 984 (1156)
+.|.||+|+|||+|++++++-.
T Consensus 39 lLl~GppGtGKT~la~aiA~~l 60 (293)
T 3t15_A 39 LGIWGGKGQGKSFQCELVFRKM 60 (293)
T ss_dssp EEEEECTTSCHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 3567999999999999999876
|
| >1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20 | Back alignment and structure |
|---|
Probab=94.76 E-value=0.0035 Score=71.12 Aligned_cols=43 Identities=19% Similarity=0.250 Sum_probs=37.7
Q ss_pred CCccccceEEeeCCeE--EEEEcCCCCChHHHHHHHhCCCCCCCc
Q 037346 373 NPTLRNINLKVFHGMR--VAVCGTVGSGKSSCLSCILGGVPKESG 415 (1156)
Q Consensus 373 ~~~l~~i~l~i~~g~~--~~ivG~~GsGKSTll~~i~g~~~~~~G 415 (1156)
..+++.++..++.|++ +.+.||+|+||||+++++++.+.+..+
T Consensus 31 ~~~~~~L~~~i~~g~~~~~ll~Gp~G~GKTtla~~la~~l~~~~~ 75 (340)
T 1sxj_C 31 NEVITTVRKFVDEGKLPHLLFYGPPGTGKTSTIVALAREIYGKNY 75 (340)
T ss_dssp HHHHHHHHHHHHTTCCCCEEEECSSSSSHHHHHHHHHHHHHTTSH
T ss_pred HHHHHHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHHcCCCc
Confidence 3578889999999998 999999999999999999998766544
|
| >2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix} | Back alignment and structure |
|---|
Probab=94.75 E-value=0.031 Score=64.08 Aligned_cols=26 Identities=31% Similarity=0.520 Sum_probs=21.8
Q ss_pred CCceeeCCCCCCHHHHHHHHhhcccC
Q 037346 961 LPLVLRGRTGSGKSTLIQTLFRIVES 986 (1156)
Q Consensus 961 ~~~vL~G~SGsGKSTL~~lL~rl~~p 986 (1156)
..+.|.|++|+||||+++.+.+....
T Consensus 45 ~~vll~G~~G~GKT~l~~~~~~~~~~ 70 (387)
T 2v1u_A 45 SNALLYGLTGTGKTAVARLVLRRLEA 70 (387)
T ss_dssp CCEEECBCTTSSHHHHHHHHHHHHHH
T ss_pred CcEEEECCCCCCHHHHHHHHHHHHHH
Confidence 34678899999999999999987643
|
| >1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A* | Back alignment and structure |
|---|
Probab=94.74 E-value=0.015 Score=58.78 Aligned_cols=26 Identities=23% Similarity=0.461 Sum_probs=23.4
Q ss_pred CeEEEEEcCCCCChHHHHHHHhCCCC
Q 037346 386 GMRVAVCGTVGSGKSSCLSCILGGVP 411 (1156)
Q Consensus 386 g~~~~ivG~~GsGKSTll~~i~g~~~ 411 (1156)
|.++.|+|++||||||+.+.|...+.
T Consensus 3 ~~~i~l~G~~GsGKST~a~~La~~l~ 28 (178)
T 1qhx_A 3 TRMIILNGGSSAGKSGIVRCLQSVLP 28 (178)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHSS
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhcC
Confidence 57899999999999999999997664
|
| >1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C* | Back alignment and structure |
|---|
Probab=94.74 E-value=0.11 Score=58.02 Aligned_cols=45 Identities=11% Similarity=0.300 Sum_probs=31.8
Q ss_pred cCCCEEEEecCCcCCCHHHHHHHHHHHHHhc------------------CCceEEEeecCcccc
Q 037346 1068 KKSKVLVLDEATASVDTATDNQIQQTLRQHF------------------SDCTVVTIAHRITSV 1113 (1156)
Q Consensus 1068 r~~~ILiLDEaTS~LD~~te~~I~~~l~~~~------------------~~~TvI~IaHrl~ti 1113 (1156)
.++.+|+|||.- .++......+.+.+.+.. .+..+|..|++...+
T Consensus 89 ~~~~~l~lDEi~-~l~~~~~~~L~~~l~~~~~~~v~~~~~~~~~~~~~~~~~~~i~~t~~~~~~ 151 (324)
T 1hqc_A 89 EEGDILFIDEIH-RLSRQAEEHLYPAMEDFVMDIVIGQGPAARTIRLELPRFTLIGATTRPGLI 151 (324)
T ss_dssp CTTCEEEETTTT-SCCHHHHHHHHHHHHHSEEEECCSSSSSCCCEEEECCCCEEEEEESCCSSC
T ss_pred cCCCEEEEECCc-ccccchHHHHHHHHHhhhhHHhccccccccccccCCCCEEEEEeCCCcccC
Confidence 468899999996 667777777777777642 134577778876544
|
| >1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B* | Back alignment and structure |
|---|
Probab=94.72 E-value=0.015 Score=64.11 Aligned_cols=36 Identities=25% Similarity=0.261 Sum_probs=27.9
Q ss_pred eCCeEEEEEcCCCCChHHHHHHHhCCCCCCCcEEEEcC
Q 037346 384 FHGMRVAVCGTVGSGKSSCLSCILGGVPKESGIIRLCG 421 (1156)
Q Consensus 384 ~~g~~~~ivG~~GsGKSTll~~i~g~~~~~~G~i~~~g 421 (1156)
.+|.++.|+||+||||||+.+.|...++ .|.+.+++
T Consensus 31 ~~~~livl~G~sGsGKSTla~~L~~~~~--~~~~~Is~ 66 (287)
T 1gvn_B 31 ESPTAFLLGGQPGSGKTSLRSAIFEETQ--GNVIVIDN 66 (287)
T ss_dssp SSCEEEEEECCTTSCTHHHHHHHHHHTT--TCCEEECT
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhC--CCeEEEec
Confidence 3567999999999999999999987653 24455543
|
| >1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20 | Back alignment and structure |
|---|
Probab=94.71 E-value=0.042 Score=56.66 Aligned_cols=22 Identities=27% Similarity=0.474 Sum_probs=19.8
Q ss_pred ceeeCCCCCCHHHHHHHHhhcc
Q 037346 963 LVLRGRTGSGKSTLIQTLFRIV 984 (1156)
Q Consensus 963 ~vL~G~SGsGKSTL~~lL~rl~ 984 (1156)
+.+.||.|+||||++.+|++.+
T Consensus 61 ili~GPPGtGKTt~a~ala~~l 82 (212)
T 1tue_A 61 LVFCGPANTGKSYFGMSFIHFI 82 (212)
T ss_dssp EEEESCGGGCHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 4677999999999999999985
|
| >1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20 | Back alignment and structure |
|---|
Probab=94.69 E-value=0.011 Score=64.00 Aligned_cols=34 Identities=26% Similarity=0.440 Sum_probs=24.6
Q ss_pred cccceEEeeCCeEEEEEcCCCCChHHHHHHHhCCCC
Q 037346 376 LRNINLKVFHGMRVAVCGTVGSGKSSCLSCILGGVP 411 (1156)
Q Consensus 376 l~~i~l~i~~g~~~~ivG~~GsGKSTll~~i~g~~~ 411 (1156)
++++++.+++| +.|+||+|+|||||+++|.+++.
T Consensus 37 ~~~~~~~~~~~--vll~G~~GtGKT~la~~la~~~~ 70 (257)
T 1lv7_A 37 FQKLGGKIPKG--VLMVGPPGTGKTLLAKAIAGEAK 70 (257)
T ss_dssp C-----CCCCE--EEEECCTTSCHHHHHHHHHHHHT
T ss_pred HHHcCCCCCCe--EEEECcCCCCHHHHHHHHHHHcC
Confidence 44455555555 88999999999999999998764
|
| >3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae} | Back alignment and structure |
|---|
Probab=94.65 E-value=0.075 Score=51.72 Aligned_cols=39 Identities=10% Similarity=0.102 Sum_probs=26.0
Q ss_pred CCEEEEecCCcCCCHHHHHHHHHHHHHhc-CCceEEEeecC
Q 037346 1070 SKVLVLDEATASVDTATDNQIQQTLRQHF-SDCTVVTIAHR 1109 (1156)
Q Consensus 1070 ~~ILiLDEaTS~LD~~te~~I~~~l~~~~-~~~TvI~IaHr 1109 (1156)
..+|+|||.- .++.+....+.+.+.+.. .+..+|..|.+
T Consensus 76 ~~~l~lDei~-~l~~~~q~~Ll~~l~~~~~~~~~iI~~tn~ 115 (143)
T 3co5_A 76 GGVLYVGDIA-QYSRNIQTGITFIIGKAERCRVRVIASCSY 115 (143)
T ss_dssp TSEEEEEECT-TCCHHHHHHHHHHHHHHTTTTCEEEEEEEE
T ss_pred CCeEEEeChH-HCCHHHHHHHHHHHHhCCCCCEEEEEecCC
Confidence 4789999976 567777777878777652 23445555543
|
| >1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=94.63 E-value=0.1 Score=58.55 Aligned_cols=23 Identities=30% Similarity=0.433 Sum_probs=20.4
Q ss_pred CceeeCCCCCCHHHHHHHHhhcc
Q 037346 962 PLVLRGRTGSGKSTLIQTLFRIV 984 (1156)
Q Consensus 962 ~~vL~G~SGsGKSTL~~lL~rl~ 984 (1156)
.+.|.||+|+|||+|++++.+..
T Consensus 47 ~iLL~GppGtGKT~la~ala~~~ 69 (322)
T 1xwi_A 47 GILLFGPPGTGKSYLAKAVATEA 69 (322)
T ss_dssp EEEEESSSSSCHHHHHHHHHHHT
T ss_pred eEEEECCCCccHHHHHHHHHHHc
Confidence 35788999999999999999865
|
| >3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=94.63 E-value=0.045 Score=62.37 Aligned_cols=23 Identities=22% Similarity=0.355 Sum_probs=20.2
Q ss_pred CceeeCCCCCCHHHHHHHHhhcc
Q 037346 962 PLVLRGRTGSGKSTLIQTLFRIV 984 (1156)
Q Consensus 962 ~~vL~G~SGsGKSTL~~lL~rl~ 984 (1156)
.+.|.|++|+|||||++++.+..
T Consensus 119 ~vLl~GppGtGKT~la~aia~~~ 141 (357)
T 3d8b_A 119 GILLFGPPGTGKTLIGKCIASQS 141 (357)
T ss_dssp EEEEESSTTSSHHHHHHHHHHHT
T ss_pred eEEEECCCCCCHHHHHHHHHHHc
Confidence 35788999999999999998765
|
| >1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A | Back alignment and structure |
|---|
Probab=94.56 E-value=0.013 Score=60.14 Aligned_cols=24 Identities=29% Similarity=0.606 Sum_probs=21.0
Q ss_pred EEEEEcCCCCChHHHHHHHhCCCC
Q 037346 388 RVAVCGTVGSGKSSCLSCILGGVP 411 (1156)
Q Consensus 388 ~~~ivG~~GsGKSTll~~i~g~~~ 411 (1156)
.+.|+||||||||||++.|+...+
T Consensus 3 pIVi~GPSG~GK~Tl~~~L~~~~~ 26 (186)
T 1ex7_A 3 PIVISGPSGTGKSTLLKKLFAEYP 26 (186)
T ss_dssp CEEEECCTTSSHHHHHHHHHHHCT
T ss_pred EEEEECCCCCCHHHHHHHHHHhCC
Confidence 378999999999999999987654
|
| >2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=94.54 E-value=0.017 Score=58.82 Aligned_cols=21 Identities=33% Similarity=0.455 Sum_probs=19.1
Q ss_pred ceeeCCCCCCHHHHHHHHhhc
Q 037346 963 LVLRGRTGSGKSTLIQTLFRI 983 (1156)
Q Consensus 963 ~vL~G~SGsGKSTL~~lL~rl 983 (1156)
+++.|++|+|||||++.|.+-
T Consensus 10 i~lvG~~gvGKStL~~~l~~~ 30 (188)
T 2wjg_A 10 IALIGNPNVGKSTIFNALTGE 30 (188)
T ss_dssp EEEECSTTSSHHHHHHHHHTT
T ss_pred EEEECCCCCCHHHHHHHHhCC
Confidence 578899999999999999984
|
| >1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=94.53 E-value=0.016 Score=61.90 Aligned_cols=28 Identities=25% Similarity=0.375 Sum_probs=24.1
Q ss_pred eeCCeEEEEEcCCCCChHHHHHHHhCCC
Q 037346 383 VFHGMRVAVCGTVGSGKSSCLSCILGGV 410 (1156)
Q Consensus 383 i~~g~~~~ivG~~GsGKSTll~~i~g~~ 410 (1156)
-++|.+++|+|++||||||+.+.|.+.+
T Consensus 13 ~~~~~~i~i~G~~gsGKst~~~~l~~~l 40 (236)
T 1q3t_A 13 KMKTIQIAIDGPASSGKSTVAKIIAKDF 40 (236)
T ss_dssp -CCCCEEEEECSSCSSHHHHHHHHHHHH
T ss_pred ccCCcEEEEECCCCCCHHHHHHHHHHHc
Confidence 3578899999999999999999998743
|
| >3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A* | Back alignment and structure |
|---|
Probab=94.52 E-value=0.017 Score=57.91 Aligned_cols=23 Identities=13% Similarity=0.005 Sum_probs=20.8
Q ss_pred EEEEEcCCCCChHHHHHHHhCCC
Q 037346 388 RVAVCGTVGSGKSSCLSCILGGV 410 (1156)
Q Consensus 388 ~~~ivG~~GsGKSTll~~i~g~~ 410 (1156)
+++|+|++||||||+.+.|...+
T Consensus 3 ~i~l~G~~GsGKsT~~~~L~~~l 25 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVAAKLSKEL 25 (173)
T ss_dssp EEEEECSSSSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 68999999999999999998654
|
| >2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A* | Back alignment and structure |
|---|
Probab=94.52 E-value=0.023 Score=56.74 Aligned_cols=22 Identities=32% Similarity=0.401 Sum_probs=19.9
Q ss_pred ceeeCCCCCCHHHHHHHHhhcc
Q 037346 963 LVLRGRTGSGKSTLIQTLFRIV 984 (1156)
Q Consensus 963 ~vL~G~SGsGKSTL~~lL~rl~ 984 (1156)
+++.|++|+|||||++.|.+..
T Consensus 6 v~lvG~~gvGKStL~~~l~~~~ 27 (165)
T 2wji_A 6 IALIGNPNVGKSTIFNALTGEN 27 (165)
T ss_dssp EEEECSTTSSHHHHHHHHHCCS
T ss_pred EEEECCCCCCHHHHHHHHhCCC
Confidence 5788999999999999999864
|
| >2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens} | Back alignment and structure |
|---|
Probab=94.49 E-value=0.079 Score=57.07 Aligned_cols=116 Identities=12% Similarity=0.149 Sum_probs=0.0
Q ss_pred cCCCCceeeCCCCCCHHHHHHHHhhcccCCCceEEEcCeeCCCCChHHHhhcCeeeccccccccccchhccCCCCCCCHH
Q 037346 958 APNLPLVLRGRTGSGKSTLIQTLFRIVESTAGHILIDGKDISLIGLHDLRTRLSIIPQDPTMFEGTTRSNLDPLEEHADE 1037 (1156)
Q Consensus 958 ~~~~~~vL~G~SGsGKSTL~~lL~rl~~p~~G~I~idG~di~~i~~~~LR~~i~~VpQdp~LF~gTIr~Nl~~~~~~~de 1037 (1156)
.+..++.|.|++|+||||+++++.+.. ...++.-+..+-.......+..
T Consensus 37 ~~~~~vll~G~~GtGKT~la~~la~~~-------------------------------~~~~~~~~~~~~~~~~~~~~~~ 85 (262)
T 2qz4_A 37 KVPKGALLLGPPGCGKTLLAKAVATEA-------------------------------QVPFLAMAGAEFVEVIGGLGAA 85 (262)
T ss_dssp CCCCEEEEESCTTSSHHHHHHHHHHHH-------------------------------TCCEEEEETTTTSSSSTTHHHH
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHHh-------------------------------CCCEEEechHHHHhhccChhHH
Q ss_pred HHHHHHHHcCCChHHHhhcCCccccccccccCCCEEEEecCCcCC-----------CHHHHHHHHHHHHHhcC-----Cc
Q 037346 1038 QIWEALDKCQLGDEVRKKKGKLDSQGRVLLKKSKVLVLDEATASV-----------DTATDNQIQQTLRQHFS-----DC 1101 (1156)
Q Consensus 1038 ei~~al~~~~l~~~i~~lp~gl~s~ARALLr~~~ILiLDEaTS~L-----------D~~te~~I~~~l~~~~~-----~~ 1101 (1156)
.+...++. |.-..|.||++||.-.-. +.+....+.+.+...-. +.
T Consensus 86 ~~~~~~~~-------------------a~~~~~~vl~iDeid~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~~ 146 (262)
T 2qz4_A 86 RVRSLFKE-------------------ARARAPCIVYIDEIDAVGKKRSTTMSGFSNTEEEQTLNQLLVEMDGMGTTDHV 146 (262)
T ss_dssp HHHHHHHH-------------------HHHTCSEEEEEECC-------------------CHHHHHHHHHHHTCCTTCCE
T ss_pred HHHHHHHH-------------------HHhcCCeEEEEeCcchhhccccccccCccchhHHHHHHHHHHHhhCcCCCCCE
Q ss_pred eEEEeecCccccc-------ccCEEEEEe
Q 037346 1102 TVVTIAHRITSVL-------DSAMVLLLN 1123 (1156)
Q Consensus 1102 TvI~IaHrl~ti~-------~~D~I~Vl~ 1123 (1156)
.+|..+.+...+. .+|+.+.+.
T Consensus 147 ~vi~~tn~~~~ld~~l~~~~R~~~~i~i~ 175 (262)
T 2qz4_A 147 IVLASTNRADILDGALMRPGRLDRHVFID 175 (262)
T ss_dssp EEEEEESCGGGGGSGGGSTTSCCEEEECC
T ss_pred EEEecCCChhhcCHHHhcCCcCCeEEEeC
|
| >3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp} | Back alignment and structure |
|---|
Probab=94.45 E-value=0.16 Score=57.02 Aligned_cols=24 Identities=25% Similarity=0.425 Sum_probs=20.5
Q ss_pred CceeeCCCCCCHHHHHHHHhhccc
Q 037346 962 PLVLRGRTGSGKSTLIQTLFRIVE 985 (1156)
Q Consensus 962 ~~vL~G~SGsGKSTL~~lL~rl~~ 985 (1156)
++.|.|++|+||||+++.+.+...
T Consensus 57 ~vll~G~~GtGKT~la~~ia~~~~ 80 (338)
T 3pfi_A 57 HILFSGPAGLGKTTLANIISYEMS 80 (338)
T ss_dssp CEEEECSTTSSHHHHHHHHHHHTT
T ss_pred eEEEECcCCCCHHHHHHHHHHHhC
Confidence 467889999999999999987653
|
| >4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A | Back alignment and structure |
|---|
Probab=94.45 E-value=0.012 Score=68.01 Aligned_cols=35 Identities=14% Similarity=0.101 Sum_probs=29.1
Q ss_pred CCeEEEEEcCCCCChHHHHHHHhCCCCCCCcEEEE
Q 037346 385 HGMRVAVCGTVGSGKSSCLSCILGGVPKESGIIRL 419 (1156)
Q Consensus 385 ~g~~~~ivG~~GsGKSTll~~i~g~~~~~~G~i~~ 419 (1156)
.+..++|+|++||||||+++.|++.+.+..+.|.+
T Consensus 34 ~~~~~~i~G~~G~GKs~~~~~~~~~~~~~~~~~~~ 68 (392)
T 4ag6_A 34 TNSNWTILAKPGAGKSFTAKMLLLREYMQGSRVII 68 (392)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHHHHHTTTCCEEE
T ss_pred ccCceEEEcCCCCCHHHHHHHHHHHHHHCCCEEEE
Confidence 56788999999999999999999887766665544
|
| >2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus} | Back alignment and structure |
|---|
Probab=94.40 E-value=0.02 Score=58.71 Aligned_cols=27 Identities=19% Similarity=0.287 Sum_probs=23.6
Q ss_pred eCCeEEEEEcCCCCChHHHHHHHhCCC
Q 037346 384 FHGMRVAVCGTVGSGKSSCLSCILGGV 410 (1156)
Q Consensus 384 ~~g~~~~ivG~~GsGKSTll~~i~g~~ 410 (1156)
++|.++.|+|++||||||+.+.|...+
T Consensus 3 ~~~~~I~l~G~~GsGKST~~~~L~~~l 29 (193)
T 2rhm_A 3 QTPALIIVTGHPATGKTTLSQALATGL 29 (193)
T ss_dssp SCCEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHc
Confidence 467899999999999999999997643
|
| >3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A* | Back alignment and structure |
|---|
Probab=94.36 E-value=0.012 Score=62.58 Aligned_cols=25 Identities=36% Similarity=0.466 Sum_probs=22.0
Q ss_pred CeEEEEEcCCCCChHHHHHHHhCCC
Q 037346 386 GMRVAVCGTVGSGKSSCLSCILGGV 410 (1156)
Q Consensus 386 g~~~~ivG~~GsGKSTll~~i~g~~ 410 (1156)
+-+++|+||+||||||+.+.|...+
T Consensus 9 ~~~i~i~G~~GsGKsTla~~la~~l 33 (233)
T 3r20_A 9 SLVVAVDGPAGTGKSSVSRGLARAL 33 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 4589999999999999999998554
|
| >3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D* | Back alignment and structure |
|---|
Probab=94.32 E-value=0.074 Score=60.63 Aligned_cols=123 Identities=15% Similarity=0.306 Sum_probs=0.0
Q ss_pred CCCCceeeCCCCCCHHHHHHHHhhcccCCCceEEEcCeeCCCCChHH-------HhhcCeeeccccccccccchhccCCC
Q 037346 959 PNLPLVLRGRTGSGKSTLIQTLFRIVESTAGHILIDGKDISLIGLHD-------LRTRLSIIPQDPTMFEGTTRSNLDPL 1031 (1156)
Q Consensus 959 ~~~~~vL~G~SGsGKSTL~~lL~rl~~p~~G~I~idG~di~~i~~~~-------LR~~i~~VpQdp~LF~gTIr~Nl~~~ 1031 (1156)
++..+.|.||+|+||||+++.+.+.......-+.+.+..+....... +|+.++.-..+ +..
T Consensus 69 ~~~~vLl~GppGtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~ 136 (368)
T 3uk6_A 69 AGRAVLIAGQPGTGKTAIAMGMAQALGPDTPFTAIAGSEIFSLEMSKTEALTQAFRRSIGVRIKA------------GAV 136 (368)
T ss_dssp TTCEEEEEESTTSSHHHHHHHHHHHHCSSCCEEEEEGGGGSCSSSCHHHHHHHHHHHSBEECC-----------------
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHhcccCCcccccchhhhhcccchhHHHHHHHHHHHHHHhhh------------hcc
Q ss_pred CCCCHHHHHHHHHHcCCChHHHhhcCCccccccccccC-----------------------------CCEEEEecCCcCC
Q 037346 1032 EEHADEQIWEALDKCQLGDEVRKKKGKLDSQGRVLLKK-----------------------------SKVLVLDEATASV 1082 (1156)
Q Consensus 1032 ~~~~deei~~al~~~~l~~~i~~lp~gl~s~ARALLr~-----------------------------~~ILiLDEaTS~L 1082 (1156)
....-.++ +.+...|.++. +++.. |.||++||+- .+
T Consensus 137 ~~~~~~~l----------d~~~~~~~~~~----~~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~vl~IDEi~-~l 201 (368)
T 3uk6_A 137 HTVSLHEI----------DVINSRTQGFL----ALFSGDTGEIKSEVREQINAKVAEWREEGKAEIIPGVLFIDEVH-ML 201 (368)
T ss_dssp -CEEHHHH----------HHHTC----CC----SCC-------CHHHHHHHHHHHHHHHHHTC---CBCEEEEESGG-GS
T ss_pred ccccHhhh----------hhhhcccccch----hhccCcccccHHHHHHHHHHHHHHhhhhccccccCceEEEhhcc-cc
Q ss_pred CHHHHHHHHHHHHHhcCCceEEEeecC
Q 037346 1083 DTATDNQIQQTLRQHFSDCTVVTIAHR 1109 (1156)
Q Consensus 1083 D~~te~~I~~~l~~~~~~~TvI~IaHr 1109 (1156)
+.+....+.+.+.+.... .+++.+.+
T Consensus 202 ~~~~~~~L~~~le~~~~~-~~ii~t~~ 227 (368)
T 3uk6_A 202 DIESFSFLNRALESDMAP-VLIMATNR 227 (368)
T ss_dssp BHHHHHHHHHHTTCTTCC-EEEEEESC
T ss_pred ChHHHHHHHHHhhCcCCC-eeeeeccc
|
| >1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A | Back alignment and structure |
|---|
Probab=94.31 E-value=0.021 Score=58.31 Aligned_cols=26 Identities=19% Similarity=0.323 Sum_probs=22.3
Q ss_pred CCeEEEEEcCCCCChHHHHHHHhCCC
Q 037346 385 HGMRVAVCGTVGSGKSSCLSCILGGV 410 (1156)
Q Consensus 385 ~g~~~~ivG~~GsGKSTll~~i~g~~ 410 (1156)
+|.+++|+|++||||||+.+.|...+
T Consensus 2 ~~~~I~i~G~~GsGKsT~~~~L~~~l 27 (192)
T 1kht_A 2 KNKVVVVTGVPGVGSTTSSQLAMDNL 27 (192)
T ss_dssp -CCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 36789999999999999999997644
|
| >2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix} | Back alignment and structure |
|---|
Probab=94.30 E-value=0.013 Score=60.07 Aligned_cols=33 Identities=30% Similarity=0.563 Sum_probs=27.9
Q ss_pred ceeeCCCCCCHHHHHHHHhhcccCCCceE-EEcC
Q 037346 963 LVLRGRTGSGKSTLIQTLFRIVESTAGHI-LIDG 995 (1156)
Q Consensus 963 ~vL~G~SGsGKSTL~~lL~rl~~p~~G~I-~idG 995 (1156)
++|.|.+||||||+++.|.+.+.+.+|.+ .+|+
T Consensus 16 i~l~G~~GsGKsT~~~~L~~~l~~~~~~~~~~~~ 49 (186)
T 2yvu_A 16 VWLTGLPGSGKTTIATRLADLLQKEGYRVEVLDG 49 (186)
T ss_dssp EEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEH
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEeeH
Confidence 56889999999999999999998777776 4554
|
| >1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B* | Back alignment and structure |
|---|
Probab=94.28 E-value=0.021 Score=58.58 Aligned_cols=32 Identities=25% Similarity=0.348 Sum_probs=19.7
Q ss_pred EEEEEEEEcCCCCceeeCCCCCCHHHHHHHHhh
Q 037346 950 IRHLQVRYAPNLPLVLRGRTGSGKSTLIQTLFR 982 (1156)
Q Consensus 950 ~~~Vsf~Y~~~~~~vL~G~SGsGKSTL~~lL~r 982 (1156)
++++++.-+ ...+++.|++|+|||||++.+.+
T Consensus 14 l~~~~~~~~-~~ki~~vG~~~vGKSsli~~l~~ 45 (190)
T 1m2o_B 14 LASLGLWNK-HGKLLFLGLDNAGKTTLLHMLKN 45 (190)
T ss_dssp -----------CEEEEEESTTSSHHHHHHHHHH
T ss_pred HHHhhccCC-ccEEEEECCCCCCHHHHHHHHhc
Confidence 355555433 23578889999999999999987
|
| >1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1 | Back alignment and structure |
|---|
Probab=94.24 E-value=0.13 Score=58.64 Aligned_cols=43 Identities=21% Similarity=0.311 Sum_probs=31.7
Q ss_pred EeeCCeEEEEEcCCCCChHHHHHHHhCCCCCCCcEEEEcCeEEEEecCC
Q 037346 382 KVFHGMRVAVCGTVGSGKSSCLSCILGGVPKESGIIRLCGTKAYVAQSP 430 (1156)
Q Consensus 382 ~i~~g~~~~ivG~~GsGKSTll~~i~g~~~~~~G~i~~~g~~~~v~Q~~ 430 (1156)
-+++|+++.|.|+.|||||||...++...... ++.+.|+.-+.
T Consensus 70 Gl~~G~li~I~G~pGsGKTtlal~la~~~~~~------g~~vlyi~~E~ 112 (366)
T 1xp8_A 70 GIPRGRITEIYGPESGGKTTLALAIVAQAQKA------GGTCAFIDAEH 112 (366)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHHHHT------TCCEEEEESSC
T ss_pred CccCCcEEEEEcCCCCChHHHHHHHHHHHHHC------CCeEEEEECCC
Confidence 47899999999999999999998776543221 23566666543
|
| >2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A* | Back alignment and structure |
|---|
Probab=94.16 E-value=0.049 Score=55.70 Aligned_cols=123 Identities=11% Similarity=0.070 Sum_probs=0.0
Q ss_pred CCCCceeeCCCCCCHHHHHHHHhhcccCCCceEEE--cCeeCCCCChHHHhhcCeeeccccccccccchhccCCCCCCCH
Q 037346 959 PNLPLVLRGRTGSGKSTLIQTLFRIVESTAGHILI--DGKDISLIGLHDLRTRLSIIPQDPTMFEGTTRSNLDPLEEHAD 1036 (1156)
Q Consensus 959 ~~~~~vL~G~SGsGKSTL~~lL~rl~~p~~G~I~i--dG~di~~i~~~~LR~~i~~VpQdp~LF~gTIr~Nl~~~~~~~d 1036 (1156)
++.-.++.|+.||||||++.-++.-+.-...++.+ ...|. ..+...+.++.+.-......
T Consensus 2 ~g~i~vi~G~~gsGKTT~ll~~~~~~~~~g~~v~~~~~~~d~-r~~~~~i~s~~g~~~~~~~~----------------- 63 (184)
T 2orw_A 2 SGKLTVITGPMYSGKTTELLSFVEIYKLGKKKVAVFKPKIDS-RYHSTMIVSHSGNGVEAHVI----------------- 63 (184)
T ss_dssp CCCEEEEEESTTSSHHHHHHHHHHHHHHTTCEEEEEEEC------CCCEECC----CEECEEE-----------------
T ss_pred ccEEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeecccc-ccCcccEEecCCCceeeEEE-----------------
Q ss_pred HHHHHHHHHcCCChHHHhhcCCccccccccccCCCEEEEecCCcCCCHHHHHHHHHHHHHhcCCceEEEeecCcc-----
Q 037346 1037 EQIWEALDKCQLGDEVRKKKGKLDSQGRVLLKKSKVLVLDEATASVDTATDNQIQQTLRQHFSDCTVVTIAHRIT----- 1111 (1156)
Q Consensus 1037 eei~~al~~~~l~~~i~~lp~gl~s~ARALLr~~~ILiLDEaTS~LD~~te~~I~~~l~~~~~~~TvI~IaHrl~----- 1111 (1156)
..+.+.....+ .+++++++||+-- +|++-...+.....+ +..|++..++.+
T Consensus 64 ---------~~~~~~~~~~~-----------~~~dvviIDE~Q~-~~~~~~~~l~~l~~~---~~~Vi~~Gl~~~f~~~~ 119 (184)
T 2orw_A 64 ---------ERPEEMRKYIE-----------EDTRGVFIDEVQF-FNPSLFEVVKDLLDR---GIDVFCAGLDLTHKQNP 119 (184)
T ss_dssp ---------SSGGGGGGGCC-----------TTEEEEEECCGGG-SCTTHHHHHHHHHHT---TCEEEEEEESBCTTSCB
T ss_pred ---------CCHHHHHHHhc-----------CCCCEEEEECccc-CCHHHHHHHHHHHHC---CCCEEEEeeccccccCC
Q ss_pred ------cccccCEEEEEe
Q 037346 1112 ------SVLDSAMVLLLN 1123 (1156)
Q Consensus 1112 ------ti~~~D~I~Vl~ 1123 (1156)
.+..||.|..|+
T Consensus 120 f~~~~~ll~~ad~v~~l~ 137 (184)
T 2orw_A 120 FETTALLLSLADTVIKKK 137 (184)
T ss_dssp CHHHHHHHHHCSEEEECC
T ss_pred ccchHHHHHHhhheEEee
|
| >1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=94.14 E-value=0.022 Score=58.85 Aligned_cols=24 Identities=25% Similarity=0.454 Sum_probs=21.7
Q ss_pred CeEEEEEcCCCCChHHHHHHHhCC
Q 037346 386 GMRVAVCGTVGSGKSSCLSCILGG 409 (1156)
Q Consensus 386 g~~~~ivG~~GsGKSTll~~i~g~ 409 (1156)
..+++|+|++||||||+.+.|...
T Consensus 8 ~~~I~i~G~~GsGKST~~~~La~~ 31 (203)
T 1uf9_A 8 PIIIGITGNIGSGKSTVAALLRSW 31 (203)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHHT
T ss_pred ceEEEEECCCCCCHHHHHHHHHHC
Confidence 357999999999999999999975
|
| >2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A* | Back alignment and structure |
|---|
Probab=94.13 E-value=0.1 Score=59.40 Aligned_cols=23 Identities=30% Similarity=0.453 Sum_probs=20.6
Q ss_pred CceeeCCCCCCHHHHHHHHhhcc
Q 037346 962 PLVLRGRTGSGKSTLIQTLFRIV 984 (1156)
Q Consensus 962 ~~vL~G~SGsGKSTL~~lL~rl~ 984 (1156)
.+.|.||+|+|||||++++.+..
T Consensus 86 ~iLL~GppGtGKT~la~ala~~~ 108 (355)
T 2qp9_X 86 GILLYGPPGTGKSYLAKAVATEA 108 (355)
T ss_dssp CEEEECSTTSCHHHHHHHHHHHH
T ss_pred eEEEECCCCCcHHHHHHHHHHHh
Confidence 46788999999999999999876
|
| >3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A | Back alignment and structure |
|---|
Probab=94.12 E-value=0.023 Score=56.92 Aligned_cols=19 Identities=32% Similarity=0.476 Sum_probs=18.3
Q ss_pred EEEEEcCCCCChHHHHHHH
Q 037346 388 RVAVCGTVGSGKSSCLSCI 406 (1156)
Q Consensus 388 ~~~ivG~~GsGKSTll~~i 406 (1156)
+++|+|++||||||+.+.|
T Consensus 3 ~I~l~G~~GsGKsT~a~~L 21 (179)
T 3lw7_A 3 VILITGMPGSGKSEFAKLL 21 (179)
T ss_dssp EEEEECCTTSCHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 7899999999999999999
|
| >1jal_A YCHF protein; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2 | Back alignment and structure |
|---|
Probab=94.10 E-value=0.032 Score=63.28 Aligned_cols=24 Identities=21% Similarity=0.469 Sum_probs=21.6
Q ss_pred CeEEEEEcCCCCChHHHHHHHhCC
Q 037346 386 GMRVAVCGTVGSGKSSCLSCILGG 409 (1156)
Q Consensus 386 g~~~~ivG~~GsGKSTll~~i~g~ 409 (1156)
|-.++|||.+|+|||||++.|.|.
T Consensus 2 ~~kI~IVG~pnvGKSTL~n~Lt~~ 25 (363)
T 1jal_A 2 GFKCGIVGLPNVGKSTLFNALTKA 25 (363)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHT
T ss_pred CCEEEEECCCCCCHHHHHHHHHCC
Confidence 457899999999999999999984
|
| >3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=94.07 E-value=0.091 Score=59.79 Aligned_cols=27 Identities=22% Similarity=0.274 Sum_probs=23.6
Q ss_pred eCCeEEEEEcCCCCChHHHHHHHhCCC
Q 037346 384 FHGMRVAVCGTVGSGKSSCLSCILGGV 410 (1156)
Q Consensus 384 ~~g~~~~ivG~~GsGKSTll~~i~g~~ 410 (1156)
.+..-+.|.||+|+|||||+++|+...
T Consensus 115 ~~~~~vLl~GppGtGKT~la~aia~~~ 141 (357)
T 3d8b_A 115 GPPKGILLFGPPGTGKTLIGKCIASQS 141 (357)
T ss_dssp SCCSEEEEESSTTSSHHHHHHHHHHHT
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHHc
Confidence 355679999999999999999999865
|
| >2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A* | Back alignment and structure |
|---|
Probab=94.05 E-value=0.025 Score=58.53 Aligned_cols=26 Identities=23% Similarity=0.300 Sum_probs=24.3
Q ss_pred CCeEEEEEcCCCCChHHHHHHHhCCC
Q 037346 385 HGMRVAVCGTVGSGKSSCLSCILGGV 410 (1156)
Q Consensus 385 ~g~~~~ivG~~GsGKSTll~~i~g~~ 410 (1156)
+|.+++|+|+.||||||+.+.|...+
T Consensus 3 ~~~~I~l~G~~GsGKsT~~~~L~~~l 28 (204)
T 2v54_A 3 RGALIVFEGLDKSGKTTQCMNIMESI 28 (204)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHTS
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHH
Confidence 67899999999999999999999876
|
| >1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A* | Back alignment and structure |
|---|
Probab=94.01 E-value=0.0069 Score=63.40 Aligned_cols=25 Identities=24% Similarity=0.404 Sum_probs=22.7
Q ss_pred EEEEEcCCCCChHHHHHHHhCCCCC
Q 037346 388 RVAVCGTVGSGKSSCLSCILGGVPK 412 (1156)
Q Consensus 388 ~~~ivG~~GsGKSTll~~i~g~~~~ 412 (1156)
+++|+|++||||||+++.|...+..
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~~l~~ 26 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSGAFRA 26 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHHHHHE
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHHh
Confidence 6899999999999999999987754
|
| >3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=94.00 E-value=0.027 Score=57.39 Aligned_cols=26 Identities=23% Similarity=0.229 Sum_probs=22.2
Q ss_pred CCeEEEEEcCCCCChHHHHHHHhCCC
Q 037346 385 HGMRVAVCGTVGSGKSSCLSCILGGV 410 (1156)
Q Consensus 385 ~g~~~~ivG~~GsGKSTll~~i~g~~ 410 (1156)
.+..++|+|++||||||+.+.|...+
T Consensus 4 ~~~~i~l~G~~GsGKst~a~~La~~l 29 (185)
T 3trf_A 4 NLTNIYLIGLMGAGKTSVGSQLAKLT 29 (185)
T ss_dssp -CCEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHh
Confidence 36789999999999999999997644
|
| >2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10 | Back alignment and structure |
|---|
Probab=93.96 E-value=0.017 Score=65.49 Aligned_cols=38 Identities=24% Similarity=0.297 Sum_probs=33.0
Q ss_pred ceeeCCCCCCHHHHHHHHhhcccCCCceEEEcCeeCCC
Q 037346 963 LVLRGRTGSGKSTLIQTLFRIVESTAGHILIDGKDISL 1000 (1156)
Q Consensus 963 ~vL~G~SGsGKSTL~~lL~rl~~p~~G~I~idG~di~~ 1000 (1156)
+++.|++|+|||||++.|.+.+.+.+|++.+-+.|...
T Consensus 59 i~i~G~~g~GKSTl~~~l~~~~~~~~~~v~v~~~d~~~ 96 (341)
T 2p67_A 59 LGVTGTPGAGKSTFLEAFGMLLIREGLKVAVIAVDPSS 96 (341)
T ss_dssp EEEEECTTSCHHHHHHHHHHHHHHTTCCEEEEEECCC-
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEEeecCCc
Confidence 57889999999999999999999889998887777654
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST 
Original result of RPS-BLAST against SCOP70(version1.75) database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| 1156 | ||||
| d1r0wa_ | 281 | c.37.1.12 (A:) Cystic fibrosis transmembrane condu | 3e-60 | |
| d1r0wa_ | 281 | c.37.1.12 (A:) Cystic fibrosis transmembrane condu | 3e-32 | |
| d2hyda1 | 255 | c.37.1.12 (A:324-578) Putative multidrug export AT | 1e-55 | |
| d2hyda1 | 255 | c.37.1.12 (A:324-578) Putative multidrug export AT | 2e-45 | |
| d3b60a1 | 253 | c.37.1.12 (A:329-581) Multidrug resistance ABC tra | 2e-53 | |
| d3b60a1 | 253 | c.37.1.12 (A:329-581) Multidrug resistance ABC tra | 1e-42 | |
| d1jj7a_ | 251 | c.37.1.12 (A:) Peptide transporter Tap1, C-termina | 2e-48 | |
| d1jj7a_ | 251 | c.37.1.12 (A:) Peptide transporter Tap1, C-termina | 2e-35 | |
| d1mv5a_ | 242 | c.37.1.12 (A:) Multidrug resistance ABC transporte | 5e-47 | |
| d1mv5a_ | 242 | c.37.1.12 (A:) Multidrug resistance ABC transporte | 3e-35 | |
| d2pmka1 | 241 | c.37.1.12 (A:467-707) Haemolysin B ATP-binding pro | 3e-44 | |
| d2pmka1 | 241 | c.37.1.12 (A:467-707) Haemolysin B ATP-binding pro | 1e-41 | |
| d1l2ta_ | 230 | c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jann | 5e-29 | |
| d1l2ta_ | 230 | c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jann | 2e-18 | |
| d1v43a3 | 239 | c.37.1.12 (A:7-245) Hypothetical protein PH0022, N | 4e-28 | |
| d1v43a3 | 239 | c.37.1.12 (A:7-245) Hypothetical protein PH0022, N | 6e-21 | |
| d2awna2 | 232 | c.37.1.12 (A:4-235) Maltose transport protein MalK | 1e-25 | |
| d2awna2 | 232 | c.37.1.12 (A:4-235) Maltose transport protein MalK | 4e-14 | |
| d3dhwc1 | 240 | c.37.1.12 (C:1-240) Methionine import ATP-binding | 1e-25 | |
| d3dhwc1 | 240 | c.37.1.12 (C:1-240) Methionine import ATP-binding | 1e-20 | |
| d1g6ha_ | 254 | c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jann | 3e-25 | |
| d1g6ha_ | 254 | c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jann | 3e-16 | |
| d1g2912 | 240 | c.37.1.12 (1:1-240) Maltose transport protein MalK | 3e-24 | |
| d1g2912 | 240 | c.37.1.12 (1:1-240) Maltose transport protein MalK | 9e-14 | |
| d1ji0a_ | 240 | c.37.1.12 (A:) Branched chain aminoacid ABC transp | 3e-24 | |
| d1ji0a_ | 240 | c.37.1.12 (A:) Branched chain aminoacid ABC transp | 2e-11 | |
| d1b0ua_ | 258 | c.37.1.12 (A:) ATP-binding subunit of the histidin | 4e-24 | |
| d1b0ua_ | 258 | c.37.1.12 (A:) ATP-binding subunit of the histidin | 3e-21 | |
| d1l7vc_ | 231 | c.37.1.12 (C:) ABC transporter involved in vitamin | 7e-23 | |
| d1l7vc_ | 231 | c.37.1.12 (C:) ABC transporter involved in vitamin | 1e-20 | |
| d3d31a2 | 229 | c.37.1.12 (A:1-229) Sulfate/molybdate ABC transpor | 5e-22 | |
| d3d31a2 | 229 | c.37.1.12 (A:1-229) Sulfate/molybdate ABC transpor | 6e-14 | |
| d1sgwa_ | 200 | c.37.1.12 (A:) Putative ABC transporter PF0895 {Py | 5e-22 | |
| d1sgwa_ | 200 | c.37.1.12 (A:) Putative ABC transporter PF0895 {Py | 2e-17 | |
| d1vpla_ | 238 | c.37.1.12 (A:) Putative ABC transporter TM0544 {Th | 8e-22 | |
| d1vpla_ | 238 | c.37.1.12 (A:) Putative ABC transporter TM0544 {Th | 7e-16 | |
| d1oxxk2 | 242 | c.37.1.12 (K:1-242) Glucose transport protein GlcV | 9e-22 | |
| d1oxxk2 | 242 | c.37.1.12 (K:1-242) Glucose transport protein GlcV | 7e-13 | |
| d2onka1 | 240 | c.37.1.12 (A:1-240) Molybdate/tungstate import ATP | 1e-20 | |
| d2onka1 | 240 | c.37.1.12 (A:1-240) Molybdate/tungstate import ATP | 1e-15 | |
| d1ye8a1 | 178 | c.37.1.11 (A:1-178) Hypothetical kinase-like prote | 8e-15 | |
| d1ye8a1 | 178 | c.37.1.11 (A:1-178) Hypothetical kinase-like prote | 9e-11 | |
| g1f2t.1 | 292 | c.37.1.12 (A:,B:) Rad50 {Archaeon Pyrococcus furio | 9e-06 | |
| g1ii8.1 | 369 | c.37.1.12 (A:,B:) Rad50 {Archaeon Pyrococcus furio | 1e-05 |
| >d1r0wa_ c.37.1.12 (A:) Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 281 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain species: Mouse (Mus musculus) [TaxId: 10090]
Score = 205 bits (524), Expect = 3e-60
Identities = 99/265 (37%), Positives = 148/265 (55%), Gaps = 11/265 (4%)
Query: 344 DVLEKMPRGNSDTAIEIIDG--SFSWDFSSPNPTLRNINLKVFHGMRVAVCGTVGSGKSS 401
++LEK+ + N D + SFS NP L+NINL + G +A+ G+ GSGK+S
Sbjct: 18 ELLEKVQQSNGDRKHSSDENNVSFSHLCLVGNPVLKNINLNIEKGEMLAITGSTGSGKTS 77
Query: 402 CLSCILGGVPKESGIIRLCGTKAYVAQSPWIQSGKIEENILFGKEMDRERYERVLEACSL 461
L ILG + GII+ G ++ +Q WI G I+ENI+FG D RY+ V++AC L
Sbjct: 78 LLMLILGELEASEGIIKHSGRVSFCSQFSWIMPGTIKENIIFGVSYDEYRYKSVVKACQL 137
Query: 462 KKDLEVLPFGDQTIIGERGINLSGGQKQRIQIARPLYQDADIFLLDDPFSPVDDHTGAHL 521
++D+ D T++GE G+ LSGGQ+ RI +AR +Y+DAD++LLD PF +D T +
Sbjct: 138 QQDITKFAEQDNTVLGEGGVTLSGGQRARISLARAVYKDADLYLLDSPFGYLDVFTEEQV 197
Query: 522 FK--FCWVSSSKTVIYATHQVEFLPAADLILVIKDGKITQAGKYSDILNSGTDFMELVGA 579
F+ C + ++KT I T ++E L AD IL++ G G +S++ + DF
Sbjct: 198 FESCVCKLMANKTRILVTSKMEHLRKADKILILHQGSSYFYGTFSELQSLRPDFSSK--- 254
Query: 580 HKQALSGLDSIDRGPVSERKSINKE 604
L G D+ D+ R SI E
Sbjct: 255 ----LMGYDTFDQFTEERRSSILTE 275
|
| >d1r0wa_ c.37.1.12 (A:) Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 281 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain species: Mouse (Mus musculus) [TaxId: 10090]
Score = 125 bits (314), Expect = 3e-32
Identities = 44/252 (17%), Positives = 99/252 (39%), Gaps = 46/252 (18%)
Query: 931 LVIEATKPNNSRP---SHGEVNIRHLQVRYAPNLP-----------LVLRGRTGSGKSTL 976
L+ + + N R V+ HL + P L L + G TGSGK++L
Sbjct: 19 LLEKVQQSNGDRKHSSDENNVSFSHLCLVGNPVLKNINLNIEKGEMLAITGSTGSGKTSL 78
Query: 977 IQTLFRIVESTAGHILIDGKDISLIGLHDLRTRLSIIPQDPTMFEGTTRSNLDPLEEHAD 1036
+ + +E++ G I G R+S Q + GT + N+ + +
Sbjct: 79 LMLILGELEASEGIIKHSG-------------RVSFCSQFSWIMPGTIKENIIFGVSYDE 125
Query: 1037 EQIWEALDKCQLGDEVRKKKGKLDSQ------------------GRVLLKKSKVLVLDEA 1078
+ + CQL ++ K + ++ R + K + + +LD
Sbjct: 126 YRYKSVVKACQLQQDITKFAEQDNTVLGEGGVTLSGGQRARISLARAVYKDADLYLLDSP 185
Query: 1079 TASVDTATDNQIQQT-LRQHFSDCTVVTIAHRITSVLDSAMVLLLNHGLIKEYDSPTKLL 1137
+D T+ Q+ ++ + + ++ T + + ++ + + +L+L+ G Y + ++L
Sbjct: 186 FGYLDVFTEEQVFESCVCKLMANKTRILVTSKMEHLRKADKILILHQGSSYFYGTFSELQ 245
Query: 1138 ENKSSSFAQLVA 1149
+ ++L+
Sbjct: 246 SLRPDFSSKLMG 257
|
| >d2hyda1 c.37.1.12 (A:324-578) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]} Length = 255 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative multidrug export ATP-binding/permease protein SAV1866 species: Staphylococcus aureus [TaxId: 1280]
Score = 191 bits (487), Expect = 1e-55
Identities = 69/242 (28%), Positives = 113/242 (46%), Gaps = 18/242 (7%)
Query: 358 IEIIDGSFSWDFSSPNPTLRNINLKVFHGMRVAVCGTVGSGKSSCLSCILGGVPKESGII 417
I+I SF ++ + P L++INL + G VA G G GKS+ ++ I SG I
Sbjct: 17 IDIDHVSFQYN-DNEAPILKDINLSIEKGETVAFVGMSGGGKSTLINLIPRFYDVTSGQI 75
Query: 418 RLCGTK-------------AYVAQSPWIQSGKIEENILFGKEM-DRERYERVLEACSLKK 463
+ G V Q + S ++ENIL G+ E + +
Sbjct: 76 LIDGHNIKDFLTGSLRNQIGLVQQDNILFSDTVKENILLGRPTATDEEVVEAAKMANAHD 135
Query: 464 DLEVLPFGDQTIIGERGINLSGGQKQRIQIARPLYQDADIFLLDDPFSPVDDHTGAHLFK 523
+ LP G T +GERG+ LSGGQKQR+ IAR + I +LD+ S +D + + + +
Sbjct: 136 FIMNLPQGYDTEVGERGVKLSGGQKQRLSIARIFLNNPPILILDEATSALDLESESIIQE 195
Query: 524 -FCWVSSSKTVIYATHQVEFLPAADLILVIKDGKITQAGKYSDILNSGTDFMELVGAHKQ 582
+S +T + H++ + AD I+VI++G I + G + +++ + L Q
Sbjct: 196 ALDVLSKDRTTLIVAHRLSTITHADKIVVIENGHIVETGTHRELIAKQGAYEHLY--SIQ 253
Query: 583 AL 584
L
Sbjct: 254 NL 255
|
| >d2hyda1 c.37.1.12 (A:324-578) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]} Length = 255 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative multidrug export ATP-binding/permease protein SAV1866 species: Staphylococcus aureus [TaxId: 1280]
Score = 162 bits (411), Expect = 2e-45
Identities = 60/239 (25%), Positives = 110/239 (46%), Gaps = 35/239 (14%)
Query: 945 HGEVNIRHLQVRYAPNLPLVLR---------------GRTGSGKSTLIQTLFRIVESTAG 989
G ++I H+ +Y N +L+ G +G GKSTLI + R + T+G
Sbjct: 14 QGRIDIDHVSFQYNDNEAPILKDINLSIEKGETVAFVGMSGGGKSTLINLIPRFYDVTSG 73
Query: 990 HILIDGKDISLIGLHDLRTRLSIIPQDPTMFEGTTRSNL-DPLEEHADEQIWEALDKCQL 1048
ILIDG +I LR ++ ++ QD +F T + N+ DE++ EA
Sbjct: 74 QILIDGHNIKDFLTGSLRNQIGLVQQDNILFSDTVKENILLGRPTATDEEVVEAAKMANA 133
Query: 1049 GDEVRKKKGKLD----------SQG--------RVLLKKSKVLVLDEATASVDTATDNQI 1090
D + D S G R+ L +L+LDEAT+++D +++ I
Sbjct: 134 HDFIMNLPQGYDTEVGERGVKLSGGQKQRLSIARIFLNNPPILILDEATSALDLESESII 193
Query: 1091 QQTLRQHFSDCTVVTIAHRITSVLDSAMVLLLNHGLIKEYDSPTKLLENKSSSFAQLVA 1149
Q+ L D T + +AHR++++ + ++++ +G I E + +L+ + ++ L +
Sbjct: 194 QEALDVLSKDRTTLIVAHRLSTITHADKIVVIENGHIVETGTHRELIAKQ-GAYEHLYS 251
|
| >d3b60a1 c.37.1.12 (A:329-581) Multidrug resistance ABC transporter MsbA, C-terminal domain {Salmonella typhimurium [TaxId: 90371]} Length = 253 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Multidrug resistance ABC transporter MsbA, C-terminal domain species: Salmonella typhimurium [TaxId: 90371]
Score = 185 bits (470), Expect = 2e-53
Identities = 71/237 (29%), Positives = 116/237 (48%), Gaps = 17/237 (7%)
Query: 357 AIEIIDGSFSWDFSSPNPTLRNINLKVFHGMRVAVCGTVGSGKSSCLSCILGGVPKESGI 416
+E + +F++ P LRNINLK+ G VA+ G GSGKS+ S I + G
Sbjct: 13 DLEFRNVTFTYP-GREVPALRNINLKIPAGKTVALVGRSGSGKSTIASLITRFYDIDEGH 71
Query: 417 IRLCGTK-------------AYVAQSPWIQSGKIEENILFG--KEMDRERYERVLEACSL 461
I + G A V+Q+ + + + NI + +E RE+ E
Sbjct: 72 ILMDGHDLREYTLASLRNQVALVSQNVHLFNDTVANNIAYARTEEYSREQIEEAARMAYA 131
Query: 462 KKDLEVLPFGDQTIIGERGINLSGGQKQRIQIARPLYQDADIFLLDDPFSPVDDHTGAHL 521
+ + G TIIGE G+ LSGGQ+QRI IAR L +D+ I +LD+ S +D + +
Sbjct: 132 MDFINKMDNGLDTIIGENGVLLSGGQRQRIAIARALLRDSPILILDEATSALDTESERAI 191
Query: 522 FK-FCWVSSSKTVIYATHQVEFLPAADLILVIKDGKITQAGKYSDILNSGTDFMELV 577
+ ++T + H++ + AD I+V++DG I + G +S++L + +L
Sbjct: 192 QAALDELQKNRTSLVIAHRLSTIEQADEIVVVEDGIIVERGTHSELLAQHGVYAQLH 248
|
| >d3b60a1 c.37.1.12 (A:329-581) Multidrug resistance ABC transporter MsbA, C-terminal domain {Salmonella typhimurium [TaxId: 90371]} Length = 253 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Multidrug resistance ABC transporter MsbA, C-terminal domain species: Salmonella typhimurium [TaxId: 90371]
Score = 154 bits (390), Expect = 1e-42
Identities = 69/238 (28%), Positives = 115/238 (48%), Gaps = 36/238 (15%)
Query: 946 GEVNIRHLQVRYAPNLPLVLR---------------GRTGSGKSTLIQTLFRIVESTAGH 990
G++ R++ Y LR GR+GSGKST+ + R + GH
Sbjct: 12 GDLEFRNVTFTYPGREVPALRNINLKIPAGKTVALVGRSGSGKSTIASLITRFYDIDEGH 71
Query: 991 ILIDGKDISLIGLHDLRTRLSIIPQDPTMFEGTTRSN--LDPLEEHADEQIWEALDKCQL 1048
IL+DG D+ L LR +++++ Q+ +F T +N EE++ EQI EA
Sbjct: 72 ILMDGHDLREYTLASLRNQVALVSQNVHLFNDTVANNIAYARTEEYSREQIEEAARMAYA 131
Query: 1049 GDEVRKKKGKLD----------SQG--------RVLLKKSKVLVLDEATASVDTATDNQI 1090
D + K LD S G R LL+ S +L+LDEAT+++DT ++ I
Sbjct: 132 MDFINKMDNGLDTIIGENGVLLSGGQRQRIAIARALLRDSPILILDEATSALDTESERAI 191
Query: 1091 QQTLRQHFSDCTVVTIAHRITSVLDSAMVLLLNHGLIKEYDSPTKLLENKSSSFAQLV 1148
Q L + + T + IAHR++++ + ++++ G+I E + ++LL +AQL
Sbjct: 192 QAALDELQKNRTSLVIAHRLSTIEQADEIVVVEDGIIVERGTHSELLAQH-GVYAQLH 248
|
| >d1jj7a_ c.37.1.12 (A:) Peptide transporter Tap1, C-terminal ABC domain {Human (Homo sapiens) [TaxId: 9606]} Length = 251 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Peptide transporter Tap1, C-terminal ABC domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 170 bits (433), Expect = 2e-48
Identities = 56/241 (23%), Positives = 98/241 (40%), Gaps = 18/241 (7%)
Query: 357 AIEIIDGSFSWDFSSPNPTLRNINLKVFHGMRVAVCGTVGSGKSSCLSCILGGVPKESGI 416
++ D SF++ L+ + + G A+ G GSGKS+ + + G
Sbjct: 11 LVQFQDVSFAYPNRPDVLVLQGLTFTLRPGEVTALVGPNGSGKSTVAALLQNLYQPTGGQ 70
Query: 417 IRLCGTK-------------AYVAQSPWIQSGKIEENILFGKEMD--RERYERVLEACSL 461
+ L G A V Q P + ++ENI +G E
Sbjct: 71 LLLDGKPLPQYEHRYLHRQVAAVGQEPQVFGRSLQENIAYGLTQKPTMEEITAAAVKSGA 130
Query: 462 KKDLEVLPFGDQTIIGERGINLSGGQKQRIQIARPLYQDADIFLLDDPFSPVDDHTGAHL 521
+ LP G T + E G LSGGQ+Q + +AR L + + +LDD S +D ++ +
Sbjct: 131 HSFISGLPQGYDTEVDEAGSQLSGGQRQAVALARALIRKPCVLILDDATSALDANSQLQV 190
Query: 522 FKFC---WVSSSKTVIYATHQVEFLPAADLILVIKDGKITQAGKYSDILNSGTDFMELVG 578
+ S++V+ T + + AD IL ++ G I + G + ++ + +V
Sbjct: 191 EQLLYESPERYSRSVLLITQHLSLVEQADHILFLEGGAIREGGTHQQLMEKKGCYWAMVQ 250
Query: 579 A 579
A
Sbjct: 251 A 251
|
| >d1jj7a_ c.37.1.12 (A:) Peptide transporter Tap1, C-terminal ABC domain {Human (Homo sapiens) [TaxId: 9606]} Length = 251 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Peptide transporter Tap1, C-terminal ABC domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 133 bits (336), Expect = 2e-35
Identities = 54/241 (22%), Positives = 99/241 (41%), Gaps = 39/241 (16%)
Query: 946 GEVNIRHLQVRY----------------APNLPLVLRGRTGSGKSTLIQTLFRIVESTAG 989
G V + + Y P L G GSGKST+ L + + T G
Sbjct: 10 GLVQFQDVSFAYPNRPDVLVLQGLTFTLRPGEVTALVGPNGSGKSTVAALLQNLYQPTGG 69
Query: 990 HILIDGKDISLIGLHDLRTRLSIIPQDPTMFEGTTRSNL--DPLEEHADEQIWEALDKCQ 1047
+L+DGK + L +++ + Q+P +F + + N+ ++ E+I A K
Sbjct: 70 QLLLDGKPLPQYEHRYLHRQVAAVGQEPQVFGRSLQENIAYGLTQKPTMEEITAAAVKSG 129
Query: 1048 LGDEVRKKKGKLDSQ------------------GRVLLKKSKVLVLDEATASVDTATDNQ 1089
+ D++ R L++K VL+LD+AT+++D + Q
Sbjct: 130 AHSFISGLPQGYDTEVDEAGSQLSGGQRQAVALARALIRKPCVLILDDATSALDANSQLQ 189
Query: 1090 IQQTLR--QHFSDCTVVTIAHRITSVLDSAMVLLLNHGLIKEYDSPTKLLENKSSSFAQL 1147
++Q L +V+ I ++ V + +L L G I+E + +L+E K + +
Sbjct: 190 VEQLLYESPERYSRSVLLITQHLSLVEQADHILFLEGGAIREGGTHQQLMEKK-GCYWAM 248
Query: 1148 V 1148
V
Sbjct: 249 V 249
|
| >d1mv5a_ c.37.1.12 (A:) Multidrug resistance ABC transporter LmrA, C-terminal domain {Lactococcus lactis [TaxId: 1358]} Length = 242 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Multidrug resistance ABC transporter LmrA, C-terminal domain species: Lactococcus lactis [TaxId: 1358]
Score = 166 bits (422), Expect = 5e-47
Identities = 59/237 (24%), Positives = 110/237 (46%), Gaps = 18/237 (7%)
Query: 358 IEIIDGSFSWDFSSPNPTLRNINLKVFHGMRVAVCGTVGSGKSSCLSCILGGVPKESGII 417
+ F++D LR+I+ + +A G G GKS+ S + +G I
Sbjct: 2 LSARHVDFAYD--DSEQILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQPTAGEI 59
Query: 418 RLCGTK-------------AYVAQSPWIQSGKIEENILFGKE--MDRERYERVLEACSLK 462
+ G +V+Q I +G I EN+ +G E E +VL+ +
Sbjct: 60 TIDGQPIDNISLENWRSQIGFVSQDSAIMAGTIRENLTYGLEGDYTDEDLWQVLDLAFAR 119
Query: 463 KDLEVLPFGDQTIIGERGINLSGGQKQRIQIARPLYQDADIFLLDDPFSPVDDHTGAH-L 521
+E +P T +GERG+ +SGGQ+QR+ IAR ++ I +LD+ + +D + +
Sbjct: 120 SFVENMPDQLNTEVGERGVKISGGQRQRLAIARAFLRNPKILMLDEATASLDSESESMVQ 179
Query: 522 FKFCWVSSSKTVIYATHQVEFLPAADLILVIKDGKITQAGKYSDILNSGTDFMELVG 578
+ +T + H++ + AD I I+ G+IT +GK+++++ + + + V
Sbjct: 180 KALDSLMKGRTTLVIAHRLSTIVDADKIYFIEKGQITGSGKHNELVATHPLYAKYVS 236
|
| >d1mv5a_ c.37.1.12 (A:) Multidrug resistance ABC transporter LmrA, C-terminal domain {Lactococcus lactis [TaxId: 1358]} Length = 242 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Multidrug resistance ABC transporter LmrA, C-terminal domain species: Lactococcus lactis [TaxId: 1358]
Score = 132 bits (334), Expect = 3e-35
Identities = 66/238 (27%), Positives = 111/238 (46%), Gaps = 37/238 (15%)
Query: 948 VNIRHLQVRYAPNLPLVLR---------------GRTGSGKSTLIQTLFRIVESTAGHIL 992
++ RH+ Y + +LR G +G GKST+ L R + TAG I
Sbjct: 2 LSARHVDFAY-DDSEQILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQPTAGEIT 60
Query: 993 IDGKDISLIGLHDLRTRLSIIPQDPTMFEGTTRSNLD--PLEEHADEQIWEALDKCQLGD 1050
IDG+ I I L + R+++ + QD + GT R NL ++ DE +W+ LD
Sbjct: 61 IDGQPIDNISLENWRSQIGFVSQDSAIMAGTIRENLTYGLEGDYTDEDLWQVLDLAFARS 120
Query: 1051 EVRKKKGKLD----------SQG--------RVLLKKSKVLVLDEATASVDTATDNQIQQ 1092
V +L+ S G R L+ K+L+LDEATAS+D+ +++ +Q+
Sbjct: 121 FVENMPDQLNTEVGERGVKISGGQRQRLAIARAFLRNPKILMLDEATASLDSESESMVQK 180
Query: 1093 TLRQHFSDCTVVTIAHRITSVLDSAMVLLLNHGLIKEYDSPTKLLENKSSSFAQLVAE 1150
L T + IAHR+++++D+ + + G I +L+ +A+ V+E
Sbjct: 181 ALDSLMKGRTTLVIAHRLSTIVDADKIYFIEKGQITGSGKHNELVAT-HPLYAKYVSE 237
|
| >d2pmka1 c.37.1.12 (A:467-707) Haemolysin B ATP-binding protein {Escherichia coli [TaxId: 562]} Length = 241 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Haemolysin B ATP-binding protein species: Escherichia coli [TaxId: 562]
Score = 158 bits (401), Expect = 3e-44
Identities = 66/242 (27%), Positives = 106/242 (43%), Gaps = 19/242 (7%)
Query: 358 IEIIDGSFSWDFSSPNPTLRNINLKVFHGMRVAVCGTVGSGKSSCLSCILGGVPKESGII 417
I + F + SP L NINL + G + + G GSGKS+ I E+G +
Sbjct: 2 ITFRNIRFRYKPDSP-VILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQV 60
Query: 418 RLCGTK-------------AYVAQSPWIQSGKIEENILFGKE-MDRERYERVLEACSLKK 463
+ G V Q + + I +NI M E+ +
Sbjct: 61 LIDGHDLALADPNWLRRQVGVVLQDNVLLNRSIIDNISLANPGMSVEKVIYAAKLAGAHD 120
Query: 464 DLEVLPFGDQTIIGERGINLSGGQKQRIQIARPLYQDADIFLLDDPFSPVDDHTGAHLFK 523
+ L G TI+GE+G LSGGQ+QRI IAR L + I + D+ S +D + + +
Sbjct: 121 FISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMR 180
Query: 524 FCW-VSSSKTVIYATHQVEFLPAADLILVIKDGKITQAGKYSDIL-NSGTDFMELVGAHK 581
+ +TVI H++ + AD I+V++ GKI + GK+ ++L + + L
Sbjct: 181 NMHKICKGRTVIIIAHRLSTVKNADRIIVMEKGKIVEQGKHKELLSEPESLYSYLY--QL 238
Query: 582 QA 583
Q+
Sbjct: 239 QS 240
|
| >d2pmka1 c.37.1.12 (A:467-707) Haemolysin B ATP-binding protein {Escherichia coli [TaxId: 562]} Length = 241 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Haemolysin B ATP-binding protein species: Escherichia coli [TaxId: 562]
Score = 151 bits (382), Expect = 1e-41
Identities = 57/236 (24%), Positives = 111/236 (47%), Gaps = 34/236 (14%)
Query: 947 EVNIRHLQVRYAPNLPLVLR---------------GRTGSGKSTLIQTLFRIVESTAGHI 991
++ R+++ RY P+ P++L GR+GSGKSTL + + R G +
Sbjct: 1 DITFRNIRFRYKPDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQV 60
Query: 992 LIDGKDISLIGLHDLRTRLSIIPQDPTMFEGTTRSNL-DPLEEHADEQIWEALDKCQLGD 1050
LIDG D++L + LR ++ ++ QD + + N+ + E++ A D
Sbjct: 61 LIDGHDLALADPNWLRRQVGVVLQDNVLLNRSIIDNISLANPGMSVEKVIYAAKLAGAHD 120
Query: 1051 EVRKKKGKLD----------SQG--------RVLLKKSKVLVLDEATASVDTATDNQIQQ 1092
+ + + + S G R L+ K+L+ DEAT+++D +++ I +
Sbjct: 121 FISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMR 180
Query: 1093 TLRQHFSDCTVVTIAHRITSVLDSAMVLLLNHGLIKEYDSPTKLLENKSSSFAQLV 1148
+ + TV+ IAHR+++V ++ ++++ G I E +LL S ++ L
Sbjct: 181 NMHKICKGRTVIIIAHRLSTVKNADRIIVMEKGKIVEQGKHKELLSEPESLYSYLY 236
|
| >d1l2ta_ c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 230 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: MJ0796 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Score = 114 bits (286), Expect = 5e-29
Identities = 58/234 (24%), Positives = 91/234 (38%), Gaps = 36/234 (15%)
Query: 358 IEIIDGSFSW-DFSSPNPTLRNINLKVFHGMRVAVCGTVGSGKSSCLSCILGGVPKESGI 416
I++ + + ++ L+N+NL + G V++ G GSGKS+ L+ I G
Sbjct: 2 IKLKNVTKTYKMGEEIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPTEGE 61
Query: 417 IRLCGTK-----------------AYVAQSPW-IQSGKIEENILFGKEM-------DRER 451
+ + K +V Q I EN+ ER
Sbjct: 62 VYIDNIKTNDLDDDELTKIRRDKIGFVFQQFNLIPLLTALENVELPLIFKYRGAMSGEER 121
Query: 452 YERVLEACSLKKDLEVLPFGDQTIIGERGINLSGGQKQRIQIARPLYQDADIFLLDDPFS 511
+R LE + + E + LSGGQ+QR+ IAR L + I L D P
Sbjct: 122 RKRALECLKMAELEE-------RFANHKPNQLSGGQQQRVAIARALANNPPIILADQPTG 174
Query: 512 PVDDHTGAH---LFKFCWVSSSKTVIYATHQVEFLPAADLILVIKDGKITQAGK 562
+D TG L K KTV+ TH + + I+ +KDG++ + K
Sbjct: 175 ALDSKTGEKIMQLLKKLNEEDGKTVVVVTHDINVARFGERIIYLKDGEVEREEK 228
|
| >d1l2ta_ c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 230 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: MJ0796 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Score = 83.3 bits (206), Expect = 2e-18
Identities = 38/196 (19%), Positives = 74/196 (37%), Gaps = 25/196 (12%)
Query: 963 LVLRGRTGSGKSTLIQTLFRIVESTAGHILIDGKDISLIGLHDL----RTRLSIIPQDPT 1018
+ + G +GSGKST++ + + + T G + ID + + +L R ++ + Q
Sbjct: 34 VSIMGPSGSGKSTMLNIIGCLDKPTEGEVYIDNIKTNDLDDDELTKIRRDKIGFVFQQFN 93
Query: 1019 MFEGTT-----------RSNLDPLEEHADEQIWEALDKCQLGDEVRKKKGKLDSQG---- 1063
+ T + E ++ E L +L + K S G
Sbjct: 94 LIPLLTALENVELPLIFKYRGAMSGEERRKRALECLKMAELEERFANHKPNQLSGGQQQR 153
Query: 1064 ----RVLLKKSKVLVLDEATASVDTATDNQIQQTLR--QHFSDCTVVTIAHRITSVLDSA 1117
R L +++ D+ T ++D+ T +I Q L+ TVV + H I
Sbjct: 154 VAIARALANNPPIILADQPTGALDSKTGEKIMQLLKKLNEEDGKTVVVVTHDINVARFGE 213
Query: 1118 MVLLLNHGLIKEYDSP 1133
++ L G ++ +
Sbjct: 214 RIIYLKDGEVEREEKL 229
|
| >d1v43a3 c.37.1.12 (A:7-245) Hypothetical protein PH0022, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]} Length = 239 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Hypothetical protein PH0022, N-terminal domain species: Pyrococcus horikoshii [TaxId: 53953]
Score = 111 bits (280), Expect = 4e-28
Identities = 51/216 (23%), Positives = 81/216 (37%), Gaps = 34/216 (15%)
Query: 376 LRNINLKVFHGMRVAVCGTVGSGKSSCLSCILGGVPKESGIIRLCGTK-----------A 424
+ +NL + G + + G G GK++ L I G G I +
Sbjct: 22 VNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPTEGRIYFGDRDVTYLPPKDRNIS 81
Query: 425 YVAQSPWIQSG-KIEENILFG-------KEMDRERYERVLEACSLKKDLEVLPFGDQTII 476
V QS + + ENI F K+ +R E +++ L P
Sbjct: 82 MVFQSYAVWPHMTVYENIAFPLKIKKFPKDEIDKRVRWAAELLQIEELLNRYPA------ 135
Query: 477 GERGINLSGGQKQRIQIARPLYQDADIFLLDDPFSPVDDHTGA---HLFKFCWVSSSKTV 533
LSGGQ+QR+ +AR + + D+ L+D+P S +D K T
Sbjct: 136 -----QLSGGQRQRVAVARAIVVEPDVLLMDEPLSNLDAKLRVAMRAEIKKLQQKLKVTT 190
Query: 534 IYATHQVEFLPA-ADLILVIKDGKITQAGKYSDILN 568
IY TH D I V+ G++ Q G +++
Sbjct: 191 IYVTHDQVEAMTMGDRIAVMNRGQLLQIGSPTEVYL 226
|
| >d1v43a3 c.37.1.12 (A:7-245) Hypothetical protein PH0022, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]} Length = 239 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Hypothetical protein PH0022, N-terminal domain species: Pyrococcus horikoshii [TaxId: 53953]
Score = 91.0 bits (226), Expect = 6e-21
Identities = 44/211 (20%), Positives = 94/211 (44%), Gaps = 25/211 (11%)
Query: 963 LVLRGRTGSGKSTLIQTLFRIVESTAGHILIDGKDISLIGLHDLRTRLSIIPQDPTMFEG 1022
LVL G +G GK+T ++ + + E T G I +D++ L +S++ Q ++
Sbjct: 35 LVLLGPSGCGKTTTLRMIAGLEEPTEGRIYFGDRDVT--YLPPKDRNISMVFQSYAVWPH 92
Query: 1023 -TTRSNLD-PLEEH------ADEQIWEALDKCQLGDEVRKKKGKLDSQG--------RVL 1066
T N+ PL+ D+++ A + Q+ + + + +L S G R +
Sbjct: 93 MTVYENIAFPLKIKKFPKDEIDKRVRWAAELLQIEELLNRYPAQL-SGGQRQRVAVARAI 151
Query: 1067 LKKSKVLVLDEATASVDTATDNQIQQTLR--QHFSDCTVVTIAHRITSVLDSA-MVLLLN 1123
+ + VL++DE +++D ++ ++ Q T + + H + + ++N
Sbjct: 152 VVEPDVLLMDEPLSNLDAKLRVAMRAEIKKLQQKLKVTTIYVTHDQVEAMTMGDRIAVMN 211
Query: 1124 HGLIKEYDSPTKLLENKSSSFAQLVAEYTSS 1154
G + + SPT++ +S F VA + +
Sbjct: 212 RGQLLQIGSPTEVYLRPNSVF---VATFIGA 239
|
| >d2awna2 c.37.1.12 (A:4-235) Maltose transport protein MalK, N-terminal domain {Escherichia coli [TaxId: 562]} Length = 232 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Maltose transport protein MalK, N-terminal domain species: Escherichia coli [TaxId: 562]
Score = 104 bits (260), Expect = 1e-25
Identities = 61/234 (26%), Positives = 97/234 (41%), Gaps = 37/234 (15%)
Query: 358 IEIIDGSFSWDFSSPNPTLRNINLKVFHGMRVAVCGTVGSGKSSCLSCILGGVPKESGII 417
+++ + + +W ++INL + G V G G GKS+ L I G SG +
Sbjct: 1 VQLQNVTKAWG---EVVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETITSGDL 57
Query: 418 RLCGTK-----------AYVAQSPWIQSGK-IEENILFG-------KEMDRERYERVLEA 458
+ + V QS + + EN+ FG KE+ +R +V E
Sbjct: 58 FIGEKRMNDTPPAERGVGMVFQSYALYPHLSVAENMSFGLKLAGAKKEVINQRVNQVAEV 117
Query: 459 CSLKKDLEVLPFGDQTIIGERGINLSGGQKQRIQIARPLYQDADIFLLDDPFSPVDDHTG 518
L L+ P LSGGQ+QR+ I R L + +FLLD+P S +D
Sbjct: 118 LQLAHLLDRKPK-----------ALSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAALR 166
Query: 519 AHLFKFCW---VSSSKTVIYATHQVEFLPA-ADLILVIKDGKITQAGKYSDILN 568
+ +T+IY TH AD I+V+ G++ Q GK ++ +
Sbjct: 167 VQMRIEISRLHKRLGRTMIYVTHDQVEAMTLADKIVVLDAGRVAQVGKPLELYH 220
|
| >d2awna2 c.37.1.12 (A:4-235) Maltose transport protein MalK, N-terminal domain {Escherichia coli [TaxId: 562]} Length = 232 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Maltose transport protein MalK, N-terminal domain species: Escherichia coli [TaxId: 562]
Score = 70.7 bits (173), Expect = 4e-14
Identities = 37/203 (18%), Positives = 83/203 (40%), Gaps = 22/203 (10%)
Query: 963 LVLRGRTGSGKSTLIQTLFRIVESTAGHILIDGKDISLIGLHDLRTRLSIIPQDPTMFEG 1022
+V G +G GKSTL++ + + T+G + I K ++ + ++ Q ++
Sbjct: 29 VVFVGPSGCGKSTLLRMIAGLETITSGDLFIGEKRMN--DTPPAERGVGMVFQSYALYPH 86
Query: 1023 TT--------RSNLDPLEEHADEQIWEALDKCQLGDEVRKKKGKLDSQG--------RVL 1066
+ +E ++++ + + QL + +K L S G R L
Sbjct: 87 LSVAENMSFGLKLAGAKKEVINQRVNQVAEVLQLAHLLDRKPKAL-SGGQRQRVAIGRTL 145
Query: 1067 LKKSKVLVLDEATASVDTATDNQIQQTLR--QHFSDCTVVTIAHRITSVLDSA-MVLLLN 1123
+ + V +LDE +++D A Q++ + T++ + H + A +++L+
Sbjct: 146 VAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKRLGRTMIYVTHDQVEAMTLADKIVVLD 205
Query: 1124 HGLIKEYDSPTKLLENKSSSFAQ 1146
G + + P +L + F
Sbjct: 206 AGRVAQVGKPLELYHYPADRFVA 228
|
| >d3dhwc1 c.37.1.12 (C:1-240) Methionine import ATP-binding protein MetN {Escherichia coli [TaxId: 562]} Length = 240 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Methionine import ATP-binding protein MetN species: Escherichia coli [TaxId: 562]
Score = 104 bits (261), Expect = 1e-25
Identities = 50/222 (22%), Positives = 85/222 (38%), Gaps = 39/222 (17%)
Query: 376 LRNINLKVFHGMRVAVCGTVGSGKSSCLSCILGGVPKESGIIRLCGTK------------ 423
L N++L V G V G G+GKS+ + C+ G + + G +
Sbjct: 21 LNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEGSVLVDGQELTTLSESELTKA 80
Query: 424 ----AYVAQSP-WIQSGKIEENILFG-------KEMDRERYERVLEACSLKKDLEVLPFG 471
+ Q + S + N+ K+ + R +L L + P
Sbjct: 81 RRQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEVKRRVTELLSLVGLGDKHDSYPS- 139
Query: 472 DQTIIGERGINLSGGQKQRIQIARPLYQDADIFLLDDPFSPVDDHTGAH---LFKFCWVS 528
NLSGGQKQR+ IAR L + + L D+ S +D T L K
Sbjct: 140 ----------NLSGGQKQRVAIARALASNPKVLLCDEATSALDPATTRSILELLKDINRR 189
Query: 529 SSKTVIYATHQVEF-LPAADLILVIKDGKITQAGKYSDILNS 569
T++ TH+++ D + VI +G++ + S++ +
Sbjct: 190 LGLTILLITHEMDVVKRICDCVAVISNGELIEQDTVSEVFSH 231
|
| >d3dhwc1 c.37.1.12 (C:1-240) Methionine import ATP-binding protein MetN {Escherichia coli [TaxId: 562]} Length = 240 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Methionine import ATP-binding protein MetN species: Escherichia coli [TaxId: 562]
Score = 90.3 bits (224), Expect = 1e-20
Identities = 53/206 (25%), Positives = 95/206 (46%), Gaps = 23/206 (11%)
Query: 963 LVLRGRTGSGKSTLIQTLFRIVESTAGHILIDGKDISLIGLHD---LRTRLSIIPQDPTM 1019
+ G +G+GKSTLI+ + + T G +L+DG++++ + + R ++ +I Q +
Sbjct: 34 YGVIGASGAGKSTLIRCVNLLERPTEGSVLVDGQELTTLSESELTKARRQIGMIFQHFNL 93
Query: 1020 F-EGTTRSNLD-PLEEH------ADEQIWEALDKCQLGDEVRKKKGKLDSQG-------- 1063
T N+ PLE ++ E L LGD+ L S G
Sbjct: 94 LSSRTVFGNVALPLELDNTPKDEVKRRVTELLSLVGLGDKHDSYPSNL-SGGQKQRVAIA 152
Query: 1064 RVLLKKSKVLVLDEATASVDTATDNQIQQTLR--QHFSDCTVVTIAHRITSVLDSA-MVL 1120
R L KVL+ DEAT+++D AT I + L+ T++ I H + V V
Sbjct: 153 RALASNPKVLLCDEATSALDPATTRSILELLKDINRRLGLTILLITHEMDVVKRICDCVA 212
Query: 1121 LLNHGLIKEYDSPTKLLENKSSSFAQ 1146
++++G + E D+ +++ + + AQ
Sbjct: 213 VISNGELIEQDTVSEVFSHPKTPLAQ 238
|
| >d1g6ha_ c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 254 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: MJ1267 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Score = 103 bits (259), Expect = 3e-25
Identities = 43/221 (19%), Positives = 89/221 (40%), Gaps = 27/221 (12%)
Query: 376 LRNINLKVFHGMRVAVCGTVGSGKSSCLSCILGGVPKESGIIRLCGTK------------ 423
L +++ V G + G GSGKS+ ++ I G + + G +
Sbjct: 20 LDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVYFENKDITNKEPAELYHY 79
Query: 424 --AYVAQSP-WIQSGKIEENILFGKEMDRERYERVL--------EACSLKKDLEVLPF-G 471
Q+P ++ + EN+L G+ E L E ++K ++L F
Sbjct: 80 GIVRTFQTPQPLKEMTVLENLLIGEICPGESPLNSLFYKKWIPKEEEMVEKAFKILEFLK 139
Query: 472 DQTIIGERGINLSGGQKQRIQIARPLYQDADIFLLDDPFSPVDDHTGAHLFKFCW--VSS 529
+ + LSGGQ + ++I R L + + ++D+P + V +F +
Sbjct: 140 LSHLYDRKAGELSGGQMKLVEIGRALMTNPKMIVMDEPIAGVAPGLAHDIFNHVLELKAK 199
Query: 530 SKTVIYATHQVEFLPA-ADLILVIKDGKITQAGKYSDILNS 569
T + H+++ + D + V+ +G+I G+ + + +
Sbjct: 200 GITFLIIEHRLDIVLNYIDHLYVMFNGQIIAEGRGEEEIKN 240
|
| >d1g6ha_ c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 254 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: MJ1267 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Score = 77.7 bits (191), Expect = 3e-16
Identities = 46/209 (22%), Positives = 82/209 (39%), Gaps = 33/209 (15%)
Query: 963 LVLRGRTGSGKSTLIQTLFRIVESTAGHILIDGKDISLIGLHDL-RTRLSIIPQDPTMFE 1021
++ G GSGKSTLI + +++ G + + KDI+ +L + Q P +
Sbjct: 33 TLIIGPNGSGKSTLINVITGFLKADEGRVYFENKDITNKEPAELYHYGIVRTFQTPQPLK 92
Query: 1022 GTT---------------------RSNLDPLEEHADEQIWEALDKCQLGDEVRKKKGKLD 1060
T P EE E+ ++ L+ +L +K G+L
Sbjct: 93 EMTVLENLLIGEICPGESPLNSLFYKKWIPKEEEMVEKAFKILEFLKLSHLYDRKAGEL- 151
Query: 1061 SQG--------RVLLKKSKVLVLDEATASVDTATDNQIQQTLRQ-HFSDCTVVTIAHRIT 1111
S G R L+ K++V+DE A V + I + + T + I HR+
Sbjct: 152 SGGQMKLVEIGRALMTNPKMIVMDEPIAGVAPGLAHDIFNHVLELKAKGITFLIIEHRLD 211
Query: 1112 SVLDSA-MVLLLNHGLIKEYDSPTKLLEN 1139
VL+ + ++ +G I + ++N
Sbjct: 212 IVLNYIDHLYVMFNGQIIAEGRGEEEIKN 240
|
| >d1g2912 c.37.1.12 (1:1-240) Maltose transport protein MalK, N-terminal domain {Archaeon Thermococcus litoralis [TaxId: 2265]} Length = 240 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Maltose transport protein MalK, N-terminal domain species: Archaeon Thermococcus litoralis [TaxId: 2265]
Score = 100 bits (251), Expect = 3e-24
Identities = 46/222 (20%), Positives = 78/222 (35%), Gaps = 40/222 (18%)
Query: 376 LRNINLKVFHGMRVAVCGTVGSGKSSCLSCILGGVPKESGIIRLCGT-------KAYVAQ 428
+R ++L+V G + + G G GK++ L I G G I + +V
Sbjct: 19 VREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEEPSRGQIYIGDKLVADPEKGIFVPP 78
Query: 429 SPWIQSGKIEENILF------------------GKEMDRERYERVLEACSLKKDLEVLPF 470
+ + L+ ++ +R V E L + L P
Sbjct: 79 KDRDIAMVFQSYALYPHMTVYDNIAFPLKLRKVPRQEIDQRVREVAELLGLTELLNRKPR 138
Query: 471 GDQTIIGERGINLSGGQKQRIQIARPLYQDADIFLLDDPFSPVDDHTGAHLFKFCW---V 527
LSGGQ+QR+ + R + + +FL+D+P S +D +
Sbjct: 139 -----------ELSGGQRQRVALGRAIVRKPQVFLMDEPLSNLDAKLRVRMRAELKKLQR 187
Query: 528 SSSKTVIYATHQVEFLPA-ADLILVIKDGKITQAGKYSDILN 568
T IY TH D I V+ G + Q G ++ +
Sbjct: 188 QLGVTTIYVTHDQVEAMTMGDRIAVMNRGVLQQVGSPDEVYD 229
|
| >d1g2912 c.37.1.12 (1:1-240) Maltose transport protein MalK, N-terminal domain {Archaeon Thermococcus litoralis [TaxId: 2265]} Length = 240 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Maltose transport protein MalK, N-terminal domain species: Archaeon Thermococcus litoralis [TaxId: 2265]
Score = 70.0 bits (171), Expect = 9e-14
Identities = 36/207 (17%), Positives = 92/207 (44%), Gaps = 24/207 (11%)
Query: 963 LVLRGRTGSGKSTLIQTLFRIVESTAGHILIDGKDISLIGLHDLR----TRLSIIPQDPT 1018
++L G +G GK+T ++ + + E + G I I K ++ ++++ Q
Sbjct: 32 MILLGPSGCGKTTTLRMIAGLEEPSRGQIYIGDKLVADPEKGIFVPPKDRDIAMVFQSYA 91
Query: 1019 MFE--GTTRSNLDPLEEH------ADEQIWEALDKCQLGDEVRKKKGKLDSQG------- 1063
++ + PL+ D+++ E + L + + +K +L S G
Sbjct: 92 LYPHMTVYDNIAFPLKLRKVPRQEIDQRVREVAELLGLTELLNRKPREL-SGGQRQRVAL 150
Query: 1064 -RVLLKKSKVLVLDEATASVDTATDNQIQQTLR--QHFSDCTVVTIAHRITSVLDSA-MV 1119
R +++K +V ++DE +++D +++ L+ Q T + + H + +
Sbjct: 151 GRAIVRKPQVFLMDEPLSNLDAKLRVRMRAELKKLQRQLGVTTIYVTHDQVEAMTMGDRI 210
Query: 1120 LLLNHGLIKEYDSPTKLLENKSSSFAQ 1146
++N G++++ SP ++ + +++F
Sbjct: 211 AVMNRGVLQQVGSPDEVYDKPANTFVA 237
|
| >d1ji0a_ c.37.1.12 (A:) Branched chain aminoacid ABC transporter {Thermotoga maritima, TM1139 [TaxId: 2336]} Length = 240 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Branched chain aminoacid ABC transporter species: Thermotoga maritima, TM1139 [TaxId: 2336]
Score = 100 bits (251), Expect = 3e-24
Identities = 46/234 (19%), Positives = 90/234 (38%), Gaps = 25/234 (10%)
Query: 354 SDTAIEIIDGSFSWDFSSPNPTLRNINLKVFHGMRVAVCGTVGSGKSSCLSCILGGVP-- 411
SD +E+ + ++ I+LKV G V + G G+GK++ LS I G V
Sbjct: 3 SDIVLEVQSLHVYYG---AIHAIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQ 59
Query: 412 ------------KESGIIRLCGTKAYVAQSPW-IQSGKIEENILFGKEMDRERYERVLEA 458
+ + A V + + EN++ G +++ +
Sbjct: 60 KGKIIFNGQDITNKPAHVINRMGIALVPEGRRIFPELTVYENLMMGAYNRKDKEGIKRDL 119
Query: 459 CSLKKDLEVLPFGDQTIIGERGINLSGGQKQRIQIARPLYQDADIFLLDDPFSPVDDHTG 518
+ L + + + G LSGG++Q + I R L + ++D+P +
Sbjct: 120 EWIFSLFPRL----KERLKQLGGTLSGGEQQMLAIGRALMSRPKLLMMDEPSLGLAPILV 175
Query: 519 AHLFKFCW--VSSSKTVIYATHQVEF-LPAADLILVIKDGKITQAGKYSDILNS 569
+ +F+ T++ L A V++ G+I GK S++L++
Sbjct: 176 SEVFEVIQKINQEGTTILLVEQNALGALKVAHYGYVLETGQIVLEGKASELLDN 229
|
| >d1ji0a_ c.37.1.12 (A:) Branched chain aminoacid ABC transporter {Thermotoga maritima, TM1139 [TaxId: 2336]} Length = 240 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Branched chain aminoacid ABC transporter species: Thermotoga maritima, TM1139 [TaxId: 2336]
Score = 63.4 bits (154), Expect = 2e-11
Identities = 37/195 (18%), Positives = 81/195 (41%), Gaps = 18/195 (9%)
Query: 963 LVLRGRTGSGKSTLIQTLFRIVESTAGHILIDGKDISLIGLHDLRTR-LSIIPQDPTMFE 1021
+ L G G+GK+T + + +V + G I+ +G+DI+ H + ++++P+ +F
Sbjct: 35 VTLIGANGAGKTTTLSAIAGLVRAQKGKIIFNGQDITNKPAHVINRMGIALVPEGRRIFP 94
Query: 1022 GTT-------RSNLDPLEEHADEQIWEALDKCQLGDEVRKKKGKLDSQG--------RVL 1066
T + +E + E K+ G S G R L
Sbjct: 95 ELTVYENLMMGAYNRKDKEGIKRDLEWIFSLFPRLKERLKQLGGTLSGGEQQMLAIGRAL 154
Query: 1067 LKKSKVLVLDEATASVDTATDNQIQQTLRQHFSD-CTVVTIAHRITSVLDSA-MVLLLNH 1124
+ + K+L++DE + + +++ + +++ + T++ + L A +L
Sbjct: 155 MSRPKLLMMDEPSLGLAPILVSEVFEVIQKINQEGTTILLVEQNALGALKVAHYGYVLET 214
Query: 1125 GLIKEYDSPTKLLEN 1139
G I ++LL+N
Sbjct: 215 GQIVLEGKASELLDN 229
|
| >d1b0ua_ c.37.1.12 (A:) ATP-binding subunit of the histidine permease {Salmonella typhimurium [TaxId: 90371]} Length = 258 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: ATP-binding subunit of the histidine permease species: Salmonella typhimurium [TaxId: 90371]
Score = 100 bits (251), Expect = 4e-24
Identities = 53/250 (21%), Positives = 96/250 (38%), Gaps = 51/250 (20%)
Query: 358 IEIIDGSFSWDFSSPNPTLRNINLKVFHGMRVAVCGTVGSGKSSCLSCILGGVPKESGII 417
+ +ID + + L+ ++L+ G +++ G+ GSGKS+ L CI G I
Sbjct: 3 LHVIDLHKRYG---GHEVLKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEKPSEGAI 59
Query: 418 RLCGTK--------------------------AYVAQSP-WIQSGKIEENILFG------ 444
+ G V Q + EN++
Sbjct: 60 IVNGQNINLVRDKDGQLKVADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVLG 119
Query: 445 --KEMDRERYERVLEACSLKKDLEVLPFGDQTIIGERGINLSGGQKQRIQIARPLYQDAD 502
K RER + L + + + G+ ++LSGGQ+QR+ IAR L + D
Sbjct: 120 LSKHDARERALKYLAKVGIDERAQ----------GKYPVHLSGGQQQRVSIARALAMEPD 169
Query: 503 IFLLDDPFSPVDDHTGAHLFKFC--WVSSSKTVIYATHQVEFLPA-ADLILVIKDGKITQ 559
+ L D+P S +D + + KT++ TH++ F + ++ + GKI +
Sbjct: 170 VLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHEMGFARHVSSHVIFLHQGKIEE 229
Query: 560 AGKYSDILNS 569
G + +
Sbjct: 230 EGDPEQVFGN 239
|
| >d1b0ua_ c.37.1.12 (A:) ATP-binding subunit of the histidine permease {Salmonella typhimurium [TaxId: 90371]} Length = 258 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: ATP-binding subunit of the histidine permease species: Salmonella typhimurium [TaxId: 90371]
Score = 92.2 bits (229), Expect = 3e-21
Identities = 49/225 (21%), Positives = 98/225 (43%), Gaps = 35/225 (15%)
Query: 963 LVLRGRTGSGKSTLIQTLFRIVESTAGHILIDGKDISLIGLHD-------------LRTR 1009
+ + G +GSGKST ++ + + + + G I+++G++I+L+ D LRTR
Sbjct: 31 ISIIGSSGSGKSTFLRCINFLEKPSEGAIIVNGQNINLVRDKDGQLKVADKNQLRLLRTR 90
Query: 1010 LSIIPQDPTMFEGTT---------RSNLDPLEEHADEQIWEALDKCQLGDEVRKKKGKLD 1060
L+++ Q ++ T L + A E+ + L K + + + K
Sbjct: 91 LTMVFQHFNLWSHMTVLENVMEAPIQVLGLSKHDARERALKYLAKVGIDERAQGKYPVHL 150
Query: 1061 SQG--------RVLLKKSKVLVLDEATASVDTATDNQIQQTLRQHF-SDCTVVTIAHRIT 1111
S G R L + VL+ DE T+++D ++ + ++Q T+V + H +
Sbjct: 151 SGGQQQRVSIARALAMEPDVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHEMG 210
Query: 1112 SVLDSA-MVLLLNHGLIKEYDSPTKLLENKSSSFAQLVAEYTSSS 1155
+ V+ L+ G I+E P ++ N S + ++ S
Sbjct: 211 FARHVSSHVIFLHQGKIEEEGDPEQVFGNPQSPR---LQQFLKGS 252
|
| >d1l7vc_ c.37.1.12 (C:) ABC transporter involved in vitamin B12 uptake, BtuD {Escherichia coli [TaxId: 562]} Length = 231 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: ABC transporter involved in vitamin B12 uptake, BtuD species: Escherichia coli [TaxId: 562]
Score = 96.5 bits (240), Expect = 7e-23
Identities = 43/217 (19%), Positives = 84/217 (38%), Gaps = 32/217 (14%)
Query: 376 LRNINLKVFHGMRVAVCGTVGSGKSSCLSCILGGVPKESGIIRLCGT------------- 422
L ++ +V G + + G G+GKS+ L+ + G G I+ G
Sbjct: 15 LGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMTS-GKGSIQFAGQPLEAWSATKLALH 73
Query: 423 KAYVAQSPWIQSGKIEENILFGKEMDRERYERVLEACSLKKDLEVLPFGDQTIIGERGIN 482
+AY++Q + L + D+ R E + + +G
Sbjct: 74 RAYLSQQQTPPFATPVWHYLTLHQHDKTRTELLNDVAGA--------LALDDKLGRSTNQ 125
Query: 483 LSGGQKQRIQIARPLYQ-------DADIFLLDDPFSPVDDHTGAHLFKFC--WVSSSKTV 533
LSGG+ QR+++A + Q + LLD+P + +D + L K +
Sbjct: 126 LSGGEWQRVRLAAVVLQITPQANPAGQLLLLDEPMNSLDVAQQSALDKILSALCQQGLAI 185
Query: 534 IYATHQVEFLPA-ADLILVIKDGKITQAGKYSDILNS 569
+ ++H + A ++K GK+ +G+ ++L
Sbjct: 186 VMSSHDLNHTLRHAHRAWLLKGGKMLASGRREEVLTP 222
|
| >d1l7vc_ c.37.1.12 (C:) ABC transporter involved in vitamin B12 uptake, BtuD {Escherichia coli [TaxId: 562]} Length = 231 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: ABC transporter involved in vitamin B12 uptake, BtuD species: Escherichia coli [TaxId: 562]
Score = 90.0 bits (223), Expect = 1e-20
Identities = 42/196 (21%), Positives = 71/196 (36%), Gaps = 20/196 (10%)
Query: 963 LVLRGRTGSGKSTLIQTLFRIVESTAGHILIDGKDISLIGLHDLRTRLSIIPQDPTMFEG 1022
L L G G+GKSTL+ + + S G I G+ + L + + Q T
Sbjct: 28 LHLVGPNGAGKSTLLARMAGM-TSGKGSIQFAGQPLEAWSATKLALHRAYLSQQQTPPFA 86
Query: 1023 TTRSNLDPLEEH---ADEQIWEALDKCQLGDEVRKKKGKLDS--QGRVLL---------- 1067
T + L +H E + + L D++ + +L RV L
Sbjct: 87 TPVWHYLTLHQHDKTRTELLNDVAGALALDDKLGRSTNQLSGGEWQRVRLAAVVLQITPQ 146
Query: 1068 --KKSKVLVLDEATASVDTATDNQIQQTLRQ-HFSDCTVVTIAHRITSVLDSA-MVLLLN 1123
++L+LDE S+D A + + + L +V +H + L A LL
Sbjct: 147 ANPAGQLLLLDEPMNSLDVAQQSALDKILSALCQQGLAIVMSSHDLNHTLRHAHRAWLLK 206
Query: 1124 HGLIKEYDSPTKLLEN 1139
G + ++L
Sbjct: 207 GGKMLASGRREEVLTP 222
|
| >d3d31a2 c.37.1.12 (A:1-229) Sulfate/molybdate ABC transporter, ATP-binding protein {Methanosarcina acetivorans [TaxId: 2214]} Length = 229 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Sulfate/molybdate ABC transporter, ATP-binding protein species: Methanosarcina acetivorans [TaxId: 2214]
Score = 94.0 bits (233), Expect = 5e-22
Identities = 65/231 (28%), Positives = 95/231 (41%), Gaps = 35/231 (15%)
Query: 358 IEIIDGSFSWDFSSPNPTLRNINLKVFHGMRVAVCGTVGSGKSSCLSCILGGVPKESGII 417
IEI S W N +L N++LKV G + G G+GK+ L I G +SG I
Sbjct: 2 IEIESLSRKWK----NFSLDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHVPDSGRI 57
Query: 418 RLCGT-----------KAYVAQSP-----WIQSGKIEENILFGKEMDRERYERVLEACSL 461
L G A+V Q+ +E + K D +R +
Sbjct: 58 LLDGKDVTDLSPEKHDIAFVYQNYSLFPHMNVKKNLEFGMRMKKIKDPKRVLDTARDLKI 117
Query: 462 KKDLEVLPFGDQTIIGERGINLSGGQKQRIQIARPLYQDADIFLLDDPFSPVDDHTGAHL 521
+ L+ P LSGG++QR+ +AR L + I LLD+P S +D T +
Sbjct: 118 EHLLDRNPL-----------TLSGGEQQRVALARALVTNPKILLLDEPLSALDPRTQENA 166
Query: 522 FKFCW---VSSSKTVIYATHQVEF-LPAADLILVIKDGKITQAGKYSDILN 568
+ + TV++ TH AD I V+ DGK+ Q GK +I
Sbjct: 167 REMLSVLHKKNKLTVLHITHDQTEARIMADRIAVVMDGKLIQVGKPEEIFE 217
|
| >d3d31a2 c.37.1.12 (A:1-229) Sulfate/molybdate ABC transporter, ATP-binding protein {Methanosarcina acetivorans [TaxId: 2214]} Length = 229 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Sulfate/molybdate ABC transporter, ATP-binding protein species: Methanosarcina acetivorans [TaxId: 2214]
Score = 70.5 bits (172), Expect = 6e-14
Identities = 38/200 (19%), Positives = 82/200 (41%), Gaps = 19/200 (9%)
Query: 963 LVLRGRTGSGKSTLIQTLFRIVESTAGHILIDGKDISLIGLHDLRTRLSIIPQDPTMFEG 1022
V+ G TG+GK+ ++ + +G IL+DGKD++ L + ++ + Q+ ++F
Sbjct: 29 FVILGPTGAGKTLFLELIAGFHVPDSGRILLDGKDVT--DLSPEKHDIAFVYQNYSLFPH 86
Query: 1023 TTR-----SNLDPLEEHADEQIWEALDKCQLGDEVRKKKGKLDSQG--------RVLLKK 1069
+ + +++ + ++ + + L S G R L+
Sbjct: 87 MNVKKNLEFGMRMKKIKDPKRVLDTARDLKIEHLLDRNPLTL-SGGEQQRVALARALVTN 145
Query: 1070 SKVLVLDEATASVDTATDNQIQQTLR--QHFSDCTVVTIAHRITSVLDSA-MVLLLNHGL 1126
K+L+LDE +++D T ++ L + TV+ I H T A + ++ G
Sbjct: 146 PKILLLDEPLSALDPRTQENAREMLSVLHKKNKLTVLHITHDQTEARIMADRIAVVMDGK 205
Query: 1127 IKEYDSPTKLLENKSSSFAQ 1146
+ + P ++ E
Sbjct: 206 LIQVGKPEEIFEKPVEGRVA 225
|
| >d1sgwa_ c.37.1.12 (A:) Putative ABC transporter PF0895 {Pyrococcus furiosus [TaxId: 2261]} Length = 200 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative ABC transporter PF0895 species: Pyrococcus furiosus [TaxId: 2261]
Score = 93.1 bits (231), Expect = 5e-22
Identities = 41/209 (19%), Positives = 81/209 (38%), Gaps = 30/209 (14%)
Query: 358 IEIIDGSFSWDFSSPNPTLRNINLKVFHGMRVAVCGTVGSGKSSCLSCILGGVPKESGII 417
+EI D S +D P L I + + G V G G GK++ L I + G I
Sbjct: 3 LEIRDLSVGYD----KPVLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKPLKGEI 58
Query: 418 RLCGTK--------AYVAQSP-WIQSGKIEENILFGKEMD--RERYERVLEACSLKKDLE 466
G ++ + + +E+ + + + +++A LE
Sbjct: 59 IYNGVPITKVKGKIFFLPEEIIVPRKISVEDYLKAVASLYGVKVNKNEIMDA------LE 112
Query: 467 VLPFGDQTIIGERGINLSGGQKQRIQIARPLYQDADIFLLDDPFSPVDDHTGAHLFKF-- 524
+ D ++ LS G +R+Q+A L +A+I++LDDP +D+ + + K
Sbjct: 113 SVEVLDL---KKKLGELSQGTIRRVQLASTLLVNAEIYVLDDPVVAIDEDSKHKVLKSIL 169
Query: 525 -CWVSSSKTVIYATHQVEFLPAADLILVI 552
+I + ++ + D+ +
Sbjct: 170 EILKEKGIVIISSREELSY---CDVNENL 195
|
| >d1sgwa_ c.37.1.12 (A:) Putative ABC transporter PF0895 {Pyrococcus furiosus [TaxId: 2261]} Length = 200 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative ABC transporter PF0895 species: Pyrococcus furiosus [TaxId: 2261]
Score = 80.0 bits (197), Expect = 2e-17
Identities = 35/173 (20%), Positives = 76/173 (43%), Gaps = 22/173 (12%)
Query: 963 LVLRGRTGSGKSTLIQTLFRIVESTAGHILIDGKDISLIGLHDLRTRLSIIPQDPTMFEG 1022
+ G G GK+TL++T+ ++ G I+ +G I ++ ++ +P++ +
Sbjct: 30 VNFHGPNGIGKTTLLKTISTYLKPLKGEIIYNGVPI-----TKVKGKIFFLPEEIIVPRK 84
Query: 1023 TT-RSNLDPLEEH-----ADEQIWEALDKCQLGDEVRKKKGKLDSQG--------RVLLK 1068
+ L + +I +AL+ ++ D KKK SQG LL
Sbjct: 85 ISVEDYLKAVASLYGVKVNKNEIMDALESVEVLD--LKKKLGELSQGTIRRVQLASTLLV 142
Query: 1069 KSKVLVLDEATASVDTATDNQIQQTLRQHFSDCTVVTIAHR-ITSVLDSAMVL 1120
+++ VLD+ ++D + +++ +++ + + +V I+ R S D L
Sbjct: 143 NAEIYVLDDPVVAIDEDSKHKVLKSILEILKEKGIVIISSREELSYCDVNENL 195
|
| >d1vpla_ c.37.1.12 (A:) Putative ABC transporter TM0544 {Thermotoga maritima [TaxId: 2336]} Length = 238 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative ABC transporter TM0544 species: Thermotoga maritima [TaxId: 2336]
Score = 93.5 bits (232), Expect = 8e-22
Identities = 45/243 (18%), Positives = 88/243 (36%), Gaps = 38/243 (15%)
Query: 357 AIEIIDGSFSWDFSSPNPTLRNINLKVFHGMRVAVCGTVGSGKSSCLSCILGGVPKESGI 416
A+ + D L+ I+ ++ G + G G+GK++ L I + SGI
Sbjct: 2 AVVVKDLRKRIG---KKEILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPSSGI 58
Query: 417 IRLCGTK------------AYVAQSPWIQSG-KIEENILFG-------KEMDRERYERVL 456
+ + G +Y+ + + E + F E ER
Sbjct: 59 VTVFGKNVVEEPHEVRKLISYLPEEAGAYRNMQGIEYLRFVAGFYASSSSEIEEMVERAT 118
Query: 457 EACSLKKDLEVLPFGDQTIIGERGINLSGGQKQRIQIARPLYQDADIFLLDDPFSPVDDH 516
E L + ++ +R S G +++ IAR L + + +LD+P S +D
Sbjct: 119 EIAGLGEKIK-----------DRVSTYSKGMVRKLLIARALMVNPRLAILDEPTSGLDVL 167
Query: 517 TGAHLFKFC--WVSSSKTVIYATHQVEFLPA-ADLILVIKDGKITQAGKYSDILNS-GTD 572
+ K T++ ++H + + D I +I +G I + G ++
Sbjct: 168 NAREVRKILKQASQEGLTILVSSHNMLEVEFLCDRIALIHNGTIVETGTVEELKERYKAQ 227
Query: 573 FME 575
+E
Sbjct: 228 NIE 230
|
| >d1vpla_ c.37.1.12 (A:) Putative ABC transporter TM0544 {Thermotoga maritima [TaxId: 2336]} Length = 238 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative ABC transporter TM0544 species: Thermotoga maritima [TaxId: 2336]
Score = 76.2 bits (187), Expect = 7e-16
Identities = 39/233 (16%), Positives = 95/233 (40%), Gaps = 39/233 (16%)
Query: 946 GEVNIRHLQVRYAPNLPL-------------VLRGRTGSGKSTLIQTLFRIVESTAGHIL 992
G V ++ L+ R L L G G+GK+T ++ + +++ ++G +
Sbjct: 1 GAVVVKDLRKRIGKKEILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPSSGIVT 60
Query: 993 IDGKDISLIGLHDLRTRLSIIPQDPTMFEGTTRSNLDPL--------EEHADEQIWEALD 1044
+ GK++ H++R +S +P++ + +E + A +
Sbjct: 61 VFGKNVV-EEPHEVRKLISYLPEEAGAYRNMQGIEYLRFVAGFYASSSSEIEEMVERATE 119
Query: 1045 KCQLGDEVRKKKGKLDSQG--------RVLLKKSKVLVLDEATASVDTATDNQIQQTLRQ 1096
LG++++ + S+G R L+ ++ +LDE T+ +D ++++ L+Q
Sbjct: 120 IAGLGEKIKDRVSTY-SKGMVRKLLIARALMVNPRLAILDEPTSGLDVLNAREVRKILKQ 178
Query: 1097 HFSDCTVVTIAHRITSVLDSAM-----VLLLNHGLIKEYDSPTKLLENKSSSF 1144
+ + + + + + L+++G I E + +L E +
Sbjct: 179 ASQEGLTILV---SSHNMLEVEFLCDRIALIHNGTIVETGTVEELKERYKAQN 228
|
| >d1oxxk2 c.37.1.12 (K:1-242) Glucose transport protein GlcV, N-terminal domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]} Length = 242 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Glucose transport protein GlcV, N-terminal domain species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Score = 93.6 bits (232), Expect = 9e-22
Identities = 53/221 (23%), Positives = 87/221 (39%), Gaps = 39/221 (17%)
Query: 376 LRNINLKVFHGMRVAVCGTVGSGKSSCLSCILGGVPKESGIIRLCGTK------------ 423
L N+N+ + +G R + G G+GK++ + I G +G +
Sbjct: 21 LDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPSTGELYFDDRLVASNGKLIVPPE 80
Query: 424 ----AYVAQS----PWIQSGKIEENIL----FGKEMDRERYERVLEACSLKKDLEVLPFG 471
V Q+ P + + + L KE R+R E V + + L P
Sbjct: 81 DRKIGMVFQTWALYPNLTAFENIAFPLTNMKMSKEEIRKRVEEVAKILDIHHVLNHFPR- 139
Query: 472 DQTIIGERGINLSGGQKQRIQIARPLYQDADIFLLDDPFSPVDDHTGAHLFKFCW---VS 528
LSG Q+QR+ +AR L +D + LLD+PFS +D
Sbjct: 140 ----------ELSGAQQQRVALARALVKDPSLLLLDEPFSNLDARMRDSARALVKEVQSR 189
Query: 529 SSKTVIYATHQVEFLPA-ADLILVIKDGKITQAGKYSDILN 568
T++ +H + A AD + V+ GK+ Q GK D+ +
Sbjct: 190 LGVTLLVVSHDPADIFAIADRVGVLVKGKLVQVGKPEDLYD 230
|
| >d1oxxk2 c.37.1.12 (K:1-242) Glucose transport protein GlcV, N-terminal domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]} Length = 242 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Glucose transport protein GlcV, N-terminal domain species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Score = 67.4 bits (164), Expect = 7e-13
Identities = 34/205 (16%), Positives = 79/205 (38%), Gaps = 21/205 (10%)
Query: 963 LVLRGRTGSGKSTLIQTLFRIVESTAGHILIDGKDISLIGLHDLRTR---LSIIPQDPTM 1019
+ G +G+GK+T ++ + + + G + D + ++ G + + ++ Q +
Sbjct: 34 FGILGPSGAGKTTFMRIIAGLDVPSTGELYFDDRLVASNGKLIVPPEDRKIGMVFQTWAL 93
Query: 1020 FEGTTRSN--LDPLE------EHADEQIWEALDKCQLGDEVRKKKGKLD-------SQGR 1064
+ T PL E +++ E + + +L + R
Sbjct: 94 YPNLTAFENIAFPLTNMKMSKEEIRKRVEEVAKILDIHHVLNHFPRELSGAQQQRVALAR 153
Query: 1065 VLLKKSKVLVLDEATASVDTATDNQIQQTLR--QHFSDCTVVTIAHRITSVLDSA-MVLL 1121
L+K +L+LDE +++D + + ++ Q T++ ++H + A V +
Sbjct: 154 ALVKDPSLLLLDEPFSNLDARMRDSARALVKEVQSRLGVTLLVVSHDPADIFAIADRVGV 213
Query: 1122 LNHGLIKEYDSPTKLLENKSSSFAQ 1146
L G + + P L +N S
Sbjct: 214 LVKGKLVQVGKPEDLYDNPVSIQVA 238
|
| >d2onka1 c.37.1.12 (A:1-240) Molybdate/tungstate import ATP-binding protein WtpC (ModC) {Archaeoglobus fulgidus [TaxId: 2234]} Length = 240 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Molybdate/tungstate import ATP-binding protein WtpC (ModC) species: Archaeoglobus fulgidus [TaxId: 2234]
Score = 90.1 bits (223), Expect = 1e-20
Identities = 54/221 (24%), Positives = 90/221 (40%), Gaps = 28/221 (12%)
Query: 378 NINLKVFHGMRVAVCGTVGSGKSSCLSCILGGVPKESGIIRLCGTK-----------AYV 426
N++ ++ + G G+GKS L I G V + G +RL G +V
Sbjct: 17 NVDFEM-GRDYCVLLGPTGAGKSVFLELIAGIVKPDRGEVRLNGADITPLPPERRGIGFV 75
Query: 427 AQSP-WIQSGKIEENILFGKEM--DRERYERVLEACSLKKDLEVLPFGDQTIIGERGINL 483
Q + NI +G ER RV E G ++ + L
Sbjct: 76 PQDYALFPHLSVYRNIAYGLRNVERVERDRRVREMAEK--------LGIAHLLDRKPARL 127
Query: 484 SGGQKQRIQIARPLYQDADIFLLDDPFSPVDDHTGAHLFKFCW---VSSSKTVIYATHQV 540
SGG++QR+ +AR L + LLD+P S VD T L + +++ TH +
Sbjct: 128 SGGERQRVALARALVIQPRLLLLDEPLSAVDLKTKGVLMEELRFVQREFDVPILHVTHDL 187
Query: 541 EFLPA-ADLILVIKDGKITQAGKYSDILNSGTDFM-ELVGA 579
AD + V+ +G+I + GK ++ ++ + E + A
Sbjct: 188 IEAAMLADEVAVMLNGRIVEKGKLKELFSAKNGEVAEFLSA 228
|
| >d2onka1 c.37.1.12 (A:1-240) Molybdate/tungstate import ATP-binding protein WtpC (ModC) {Archaeoglobus fulgidus [TaxId: 2234]} Length = 240 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Molybdate/tungstate import ATP-binding protein WtpC (ModC) species: Archaeoglobus fulgidus [TaxId: 2234]
Score = 75.4 bits (185), Expect = 1e-15
Identities = 47/204 (23%), Positives = 89/204 (43%), Gaps = 18/204 (8%)
Query: 963 LVLRGRTGSGKSTLIQTLFRIVESTAGHILIDGKDISLIGLHDLRTRLSIIPQDPTMF-- 1020
VL G TG+GKS ++ + IV+ G + ++G DI+ L R + +PQD +F
Sbjct: 27 CVLLGPTGAGKSVFLELIAGIVKPDRGEVRLNGADIT--PLPPERRGIGFVPQDYALFPH 84
Query: 1021 ----EGTTRSNLDPLEEHADEQIWEALDKCQLGDEVRKKKGKLD-------SQGRVLLKK 1069
+ D ++ E +K + + +K +L + R L+ +
Sbjct: 85 LSVYRNIAYGLRNVERVERDRRVREMAEKLGIAHLLDRKPARLSGGERQRVALARALVIQ 144
Query: 1070 SKVLVLDEATASVDTATDNQIQQTLR--QHFSDCTVVTIAHRITSVLDSA-MVLLLNHGL 1126
++L+LDE ++VD T + + LR Q D ++ + H + A V ++ +G
Sbjct: 145 PRLLLLDEPLSAVDLKTKGVLMEELRFVQREFDVPILHVTHDLIEAAMLADEVAVMLNGR 204
Query: 1127 IKEYDSPTKLLENKSSSFAQLVAE 1150
I E +L K+ A+ ++
Sbjct: 205 IVEKGKLKELFSAKNGEVAEFLSA 228
|
| >d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein Aq_1292 {Aquifex aeolicus [TaxId: 63363]} Length = 178 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hypothetical kinase-like protein Aq 1292 species: Aquifex aeolicus [TaxId: 63363]
Score = 71.6 bits (174), Expect = 8e-15
Identities = 16/189 (8%), Positives = 46/189 (24%), Gaps = 22/189 (11%)
Query: 387 MRVAVCGTVGSGKSSCLSCILGGVPKESGIIRLCGTKAYVAQSPWIQSGKIEENILFGKE 446
M++ + G G GK++ + I+ + K + + ++G K+
Sbjct: 1 MKIIITGEPGVGKTTLVKKIVERLGKRAIGFWTEEVRDP---ETKKRTGFRIITTEGKKK 57
Query: 447 MDRERYERVLEACSLKKDLEVLPFGDQTIIGERGINLSGGQKQRIQIARPLYQDADIFLL 506
+ ++ + + + + ++
Sbjct: 58 IFSSKFFTSKKLV------------GSYGVNVQYFEELAIPILERAYREAKKDRRKVIII 105
Query: 507 DDPFSPVDDHTGAHLFKF-CWVSSSKTVIYATHQVEFLPAADLILVIKDGKITQAGK--- 562
D+ + V+ + P I + + +
Sbjct: 106 DEIGKMELFSKKFRDLVRQIMHDPNVNVVATIPIRDVHPLVKEIRRLPGAVLIELTPENR 165
Query: 563 ---YSDILN 568
DIL+
Sbjct: 166 DVILEDILS 174
|
| >d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein Aq_1292 {Aquifex aeolicus [TaxId: 63363]} Length = 178 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hypothetical kinase-like protein Aq 1292 species: Aquifex aeolicus [TaxId: 63363]
Score = 60.0 bits (144), Expect = 9e-11
Identities = 20/173 (11%), Positives = 46/173 (26%), Gaps = 10/173 (5%)
Query: 963 LVLRGRTGSGKSTLIQTLFRIVESTAGHILIDGKDISLIGLHDLRTRLSIIPQDPTMFEG 1022
+++ G G GK+TL++ + + A + ++ +
Sbjct: 3 IIITGEPGVGKTTLVKKIVERLGKRAIGFWTEEVRDPETKKRTGFRIITTEGKKKIFSSK 62
Query: 1023 TTRSNLDPLEEHADEQIWEALDKCQLGDEVRKKKGKLDSQGRVLLKKSKVLVLDEATASV 1082
S + Q +E L + + KV+++DE
Sbjct: 63 FFTSKKLVGSYGVNVQYFEELAIPI----------LERAYREAKKDRRKVIIIDEIGKME 112
Query: 1083 DTATDNQIQQTLRQHFSDCTVVTIAHRITSVLDSAMVLLLNHGLIKEYDSPTK 1135
+ + H + VV + L ++ E +
Sbjct: 113 LFSKKFRDLVRQIMHDPNVNVVATIPIRDVHPLVKEIRRLPGAVLIELTPENR 165
|
Homologous Domains Detected by HHsearch 
Original result of HHsearch against SCOP70(version1.75) database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 1156 | |||
| d2pmka1 | 241 | Haemolysin B ATP-binding protein {Escherichia coli | 100.0 | |
| d2hyda1 | 255 | Putative multidrug export ATP-binding/permease pro | 100.0 | |
| d3b60a1 | 253 | Multidrug resistance ABC transporter MsbA, C-termi | 100.0 | |
| d1jj7a_ | 251 | Peptide transporter Tap1, C-terminal ABC domain {H | 100.0 | |
| d1mv5a_ | 242 | Multidrug resistance ABC transporter LmrA, C-termi | 100.0 | |
| d2pmka1 | 241 | Haemolysin B ATP-binding protein {Escherichia coli | 100.0 | |
| d2hyda1 | 255 | Putative multidrug export ATP-binding/permease pro | 100.0 | |
| d1r0wa_ | 281 | Cystic fibrosis transmembrane conductance regulato | 100.0 | |
| d3b60a1 | 253 | Multidrug resistance ABC transporter MsbA, C-termi | 100.0 | |
| d1jj7a_ | 251 | Peptide transporter Tap1, C-terminal ABC domain {H | 100.0 | |
| d1mv5a_ | 242 | Multidrug resistance ABC transporter LmrA, C-termi | 100.0 | |
| d2awna2 | 232 | Maltose transport protein MalK, N-terminal domain | 100.0 | |
| d1v43a3 | 239 | Hypothetical protein PH0022, N-terminal domain {Py | 100.0 | |
| d3d31a2 | 229 | Sulfate/molybdate ABC transporter, ATP-binding pro | 100.0 | |
| d1oxxk2 | 242 | Glucose transport protein GlcV, N-terminal domain | 100.0 | |
| d1g2912 | 240 | Maltose transport protein MalK, N-terminal domain | 100.0 | |
| d3dhwc1 | 240 | Methionine import ATP-binding protein MetN {Escher | 100.0 | |
| d1l2ta_ | 230 | MJ0796 {Archaeon Methanococcus jannaschii [TaxId: | 100.0 | |
| d1b0ua_ | 258 | ATP-binding subunit of the histidine permease {Sal | 100.0 | |
| d1ji0a_ | 240 | Branched chain aminoacid ABC transporter {Thermoto | 100.0 | |
| d1g6ha_ | 254 | MJ1267 {Archaeon Methanococcus jannaschii [TaxId: | 100.0 | |
| d1vpla_ | 238 | Putative ABC transporter TM0544 {Thermotoga mariti | 100.0 | |
| d2onka1 | 240 | Molybdate/tungstate import ATP-binding protein Wtp | 100.0 | |
| d1r0wa_ | 281 | Cystic fibrosis transmembrane conductance regulato | 100.0 | |
| d3d31a2 | 229 | Sulfate/molybdate ABC transporter, ATP-binding pro | 100.0 | |
| d1v43a3 | 239 | Hypothetical protein PH0022, N-terminal domain {Py | 100.0 | |
| d2awna2 | 232 | Maltose transport protein MalK, N-terminal domain | 100.0 | |
| d3dhwc1 | 240 | Methionine import ATP-binding protein MetN {Escher | 100.0 | |
| d2onka1 | 240 | Molybdate/tungstate import ATP-binding protein Wtp | 100.0 | |
| d1oxxk2 | 242 | Glucose transport protein GlcV, N-terminal domain | 100.0 | |
| d1g2912 | 240 | Maltose transport protein MalK, N-terminal domain | 100.0 | |
| d1l7vc_ | 231 | ABC transporter involved in vitamin B12 uptake, Bt | 100.0 | |
| d1l2ta_ | 230 | MJ0796 {Archaeon Methanococcus jannaschii [TaxId: | 100.0 | |
| d1sgwa_ | 200 | Putative ABC transporter PF0895 {Pyrococcus furios | 100.0 | |
| d1b0ua_ | 258 | ATP-binding subunit of the histidine permease {Sal | 100.0 | |
| d1vpla_ | 238 | Putative ABC transporter TM0544 {Thermotoga mariti | 100.0 | |
| d1g6ha_ | 254 | MJ1267 {Archaeon Methanococcus jannaschii [TaxId: | 100.0 | |
| d1ji0a_ | 240 | Branched chain aminoacid ABC transporter {Thermoto | 100.0 | |
| d1l7vc_ | 231 | ABC transporter involved in vitamin B12 uptake, Bt | 99.97 | |
| d1sgwa_ | 200 | Putative ABC transporter PF0895 {Pyrococcus furios | 99.95 | |
| d3b60a2 | 319 | Multidrug resistance ABC transporter MsbA, N-termi | 99.8 | |
| d2hyda2 | 323 | Putative multidrug export ATP-binding/permease pro | 99.79 | |
| g1f2t.1 | 292 | Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]} | 99.73 | |
| d3b60a2 | 319 | Multidrug resistance ABC transporter MsbA, N-termi | 99.68 | |
| d2hyda2 | 323 | Putative multidrug export ATP-binding/permease pro | 99.65 | |
| d1ye8a1 | 178 | Hypothetical kinase-like protein Aq_1292 {Aquifex | 99.52 | |
| d1ye8a1 | 178 | Hypothetical kinase-like protein Aq_1292 {Aquifex | 99.49 | |
| g1f2t.1 | 292 | Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]} | 99.35 | |
| d1e69a_ | 308 | Smc head domain {Thermotoga maritima [TaxId: 2336] | 98.85 | |
| g1ii8.1 | 369 | Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]} | 98.83 | |
| d1w1wa_ | 427 | Smc head domain {Baker's yeast (Saccharomyces cere | 98.66 | |
| g1xew.1 | 329 | Smc head domain {Pyrococcus furiosus [TaxId: 2261] | 98.42 | |
| d1w1wa_ | 427 | Smc head domain {Baker's yeast (Saccharomyces cere | 98.27 | |
| d1e69a_ | 308 | Smc head domain {Thermotoga maritima [TaxId: 2336] | 98.26 | |
| g1ii8.1 | 369 | Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]} | 97.84 | |
| d1wb9a2 | 234 | DNA repair protein MutS, the C-terminal domain {Es | 97.56 | |
| d1ewqa2 | 224 | DNA repair protein MutS, the C-terminal domain {Th | 97.55 | |
| d1u0la2 | 225 | Probable GTPase EngC (YjeQ), C-terminal domain {Th | 96.58 | |
| d1znwa1 | 182 | Guanylate kinase {Mycobacterium tuberculosis [TaxI | 96.4 | |
| d2i3ba1 | 189 | Cancer-related NTPase, C1orf57 {Human (Homo sapien | 96.34 | |
| d1zp6a1 | 176 | Hypothetical protein Atu3015 {Agrobacterium tumefa | 96.17 | |
| d1np6a_ | 170 | Molybdopterin-guanine dinucleotide biosynthesis pr | 96.12 | |
| d1tf7a2 | 242 | Circadian clock protein KaiC {Synechococcus sp. st | 96.09 | |
| d1t9ha2 | 231 | Probable GTPase EngC (YjeQ), C-terminal domain {Ba | 96.08 | |
| d1g6oa_ | 323 | Hexameric traffic ATPase, HP0525 {Helicobacter pyl | 96.06 | |
| d1qhla_ | 222 | Cell division protein MukB {Escherichia coli [TaxI | 96.05 | |
| d1ixza_ | 247 | AAA domain of cell division protein FtsH {Thermus | 95.98 | |
| d1sxje2 | 252 | Replication factor C5 {Baker's yeast (Saccharomyce | 95.97 | |
| d2i3ba1 | 189 | Cancer-related NTPase, C1orf57 {Human (Homo sapien | 95.95 | |
| d1nlfa_ | 274 | Hexameric replicative helicase repA {Escherichia c | 95.93 | |
| d2gj8a1 | 161 | Probable tRNA modification GTPase TrmE (MnmE), G d | 95.93 | |
| d1p9ra_ | 401 | Extracellular secretion NTPase EpsE {Vibrio choler | 95.79 | |
| d1s96a_ | 205 | Guanylate kinase {Escherichia coli [TaxId: 562]} | 95.67 | |
| d2dy1a2 | 267 | Elongation factor G (EF-G), N-terminal (G) domain | 95.66 | |
| d1cr2a_ | 277 | Gene 4 protein (g4p, DNA primase), helicase domain | 95.66 | |
| d1lv7a_ | 256 | AAA domain of cell division protein FtsH {Escheric | 95.64 | |
| d1xjca_ | 165 | Molybdopterin-guanine dinucleotide biosynthesis pr | 95.63 | |
| d1knqa_ | 171 | Gluconate kinase {Escherichia coli [TaxId: 562]} | 95.6 | |
| d1m8pa3 | 183 | ATP sulfurylase C-terminal domain {Fungus (Penicil | 95.58 | |
| d1cr2a_ | 277 | Gene 4 protein (g4p, DNA primase), helicase domain | 95.57 | |
| d1ly1a_ | 152 | Polynucleotide kinase, kinase domain {Bacteriophag | 95.39 | |
| d1svia_ | 195 | Probable GTPase EngB {Bacillus subtilis [TaxId: 14 | 95.35 | |
| d1iqpa2 | 231 | Replication factor C {Archaeon Pyrococcus furiosus | 95.35 | |
| d1y63a_ | 174 | Probable kinase LmjF30.1890 {Leishmania major [Tax | 95.33 | |
| d1lw7a2 | 192 | Transcriptional regulator NadR, ribosylnicotinamid | 95.29 | |
| d1g6oa_ | 323 | Hexameric traffic ATPase, HP0525 {Helicobacter pyl | 95.26 | |
| d2bdta1 | 176 | Hypothetical protein BH3686 {Bacillus halodurans [ | 95.25 | |
| d1ewqa2 | 224 | DNA repair protein MutS, the C-terminal domain {Th | 95.25 | |
| d1a5ta2 | 207 | delta prime subunit of DNA polymerase III, N-domai | 95.24 | |
| d1nlfa_ | 274 | Hexameric replicative helicase repA {Escherichia c | 95.22 | |
| d1qhxa_ | 178 | Chloramphenicol phosphotransferase {Streptomyces v | 95.21 | |
| d1np6a_ | 170 | Molybdopterin-guanine dinucleotide biosynthesis pr | 95.17 | |
| d1p9ra_ | 401 | Extracellular secretion NTPase EpsE {Vibrio choler | 95.13 | |
| d1njfa_ | 239 | delta prime subunit of DNA polymerase III, N-domai | 95.09 | |
| d1rz3a_ | 198 | Hypothetical protein rbstp0775 {Bacillus stearothe | 95.08 | |
| d1wb9a2 | 234 | DNA repair protein MutS, the C-terminal domain {Es | 95.05 | |
| d1znwa1 | 182 | Guanylate kinase {Mycobacterium tuberculosis [TaxI | 95.04 | |
| d1zp6a1 | 176 | Hypothetical protein Atu3015 {Agrobacterium tumefa | 94.92 | |
| d1sxjc2 | 227 | Replication factor C3 {Baker's yeast (Saccharomyce | 94.91 | |
| d1kgda_ | 178 | Guanylate kinase-like domain of Cask {Human (Homo | 94.87 | |
| d1khta_ | 190 | Adenylate kinase {Archaeon Methanococcus voltae [T | 94.85 | |
| d1kaga_ | 169 | Shikimate kinase (AroK) {Escherichia coli [TaxId: | 94.83 | |
| d1rkba_ | 173 | Adenylate kinase {Human (Homo sapiens), isoenzyme | 94.76 | |
| d1kaga_ | 169 | Shikimate kinase (AroK) {Escherichia coli [TaxId: | 94.74 | |
| d1r7ra3 | 265 | Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu | 94.72 | |
| d1mkya2 | 186 | Probable GTPase Der, N-terminal and middle domains | 94.6 | |
| d1gkya_ | 186 | Guanylate kinase {Baker's yeast (Saccharomyces cer | 94.51 | |
| d1r7ra3 | 265 | Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu | 94.5 | |
| d1mkya1 | 171 | Probable GTPase Der, N-terminal and middle domains | 94.49 | |
| d1qf9a_ | 194 | UMP/CMP kinase {Dictyostelium discoideum [TaxId: 4 | 94.47 | |
| d1x6va3 | 195 | Adenosine-5'phosphosulfate kinase (APS kinase) {Hu | 94.46 | |
| d1u0la2 | 225 | Probable GTPase EngC (YjeQ), C-terminal domain {Th | 94.44 | |
| d1j8yf2 | 211 | GTPase domain of the signal sequence recognition p | 94.44 | |
| d1gkya_ | 186 | Guanylate kinase {Baker's yeast (Saccharomyces cer | 94.42 | |
| d1kgda_ | 178 | Guanylate kinase-like domain of Cask {Human (Homo | 94.33 | |
| d2cxxa1 | 184 | GTP-binding protein engB {Pyrococcus horikoshii [T | 94.31 | |
| d1uj2a_ | 213 | Uridine-cytidine kinase 2 {Human (Homo sapiens) [T | 94.28 | |
| d1yrba1 | 244 | ATP(GTP)-binding protein PAB0955 {Pyrococcus abyss | 94.28 | |
| d1tf7a2 | 242 | Circadian clock protein KaiC {Synechococcus sp. st | 94.25 | |
| d1lvga_ | 190 | Guanylate kinase {Mouse (Mus musculus) [TaxId: 100 | 94.24 | |
| d1qhxa_ | 178 | Chloramphenicol phosphotransferase {Streptomyces v | 94.23 | |
| d1ly1a_ | 152 | Polynucleotide kinase, kinase domain {Bacteriophag | 94.22 | |
| d1n0wa_ | 242 | DNA repair protein Rad51, catalytic domain {Human | 94.18 | |
| d1wf3a1 | 178 | GTPase Era, N-terminal domain {Thermus thermophilu | 94.12 | |
| d2bdta1 | 176 | Hypothetical protein BH3686 {Bacillus halodurans [ | 94.1 | |
| d1ak2a1 | 190 | Adenylate kinase {Cow (Bos taurus), mitochondrial | 94.06 | |
| g1xew.1 | 329 | Smc head domain {Pyrococcus furiosus [TaxId: 2261] | 94.06 | |
| d1yj5a2 | 172 | 5' polynucleotide kinase-3' phosphatase, C-termina | 94.01 | |
| d1sxjb2 | 224 | Replication factor C4 {Baker's yeast (Saccharomyce | 93.97 | |
| d1lnza2 | 185 | Obg GTP-binding protein middle domain {Bacillus su | 93.96 | |
| d1qhla_ | 222 | Cell division protein MukB {Escherichia coli [TaxI | 93.89 | |
| d1lvga_ | 190 | Guanylate kinase {Mouse (Mus musculus) [TaxId: 100 | 93.87 | |
| d1r8sa_ | 160 | ADP-ribosylation factor {Human (Homo sapiens), ARF | 93.85 | |
| d1knqa_ | 171 | Gluconate kinase {Escherichia coli [TaxId: 562]} | 93.84 | |
| d1mkya2 | 186 | Probable GTPase Der, N-terminal and middle domains | 93.79 | |
| d1egaa1 | 179 | GTPase Era, N-terminal domain {Escherichia coli [T | 93.75 | |
| d3adka_ | 194 | Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]} | 93.74 | |
| d1s96a_ | 205 | Guanylate kinase {Escherichia coli [TaxId: 562]} | 93.73 | |
| d1f6ba_ | 186 | SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: | 93.72 | |
| d1y63a_ | 174 | Probable kinase LmjF30.1890 {Leishmania major [Tax | 93.72 | |
| d1upta_ | 169 | ADP-ribosylation factor {Human (Homo sapiens), ARL | 93.71 | |
| d1rkba_ | 173 | Adenylate kinase {Human (Homo sapiens), isoenzyme | 93.69 | |
| d1lw7a2 | 192 | Transcriptional regulator NadR, ribosylnicotinamid | 93.66 | |
| d1udxa2 | 180 | Obg GTP-binding protein middle domain {Thermus the | 93.58 | |
| d1ukza_ | 196 | Uridylate kinase {Baker's yeast (Saccharomyces cer | 93.54 | |
| d1ksha_ | 165 | ADP-ribosylation factor {Mouse (Mus musculus), ARL | 93.54 | |
| d1nrjb_ | 209 | Signal recognition particle receptor beta-subunit | 93.54 | |
| d2qtvb1 | 166 | SAR1 {Baker's yeast (Saccharomyces cerevisiae) [Ta | 93.51 | |
| d1sxje2 | 252 | Replication factor C5 {Baker's yeast (Saccharomyce | 93.5 | |
| d1khta_ | 190 | Adenylate kinase {Archaeon Methanococcus voltae [T | 93.45 | |
| d1gvnb_ | 273 | Plasmid maintenance system epsilon/zeta, toxin zet | 93.42 | |
| d1rz3a_ | 198 | Hypothetical protein rbstp0775 {Bacillus stearothe | 93.37 | |
| d1h65a_ | 257 | Chloroplast protein translocon GTPase Toc34 {Garde | 93.33 | |
| d1m8pa3 | 183 | ATP sulfurylase C-terminal domain {Fungus (Penicil | 93.29 | |
| d1svia_ | 195 | Probable GTPase EngB {Bacillus subtilis [TaxId: 14 | 93.26 | |
| d1xjca_ | 165 | Molybdopterin-guanine dinucleotide biosynthesis pr | 93.26 | |
| d2bv3a2 | 276 | Elongation factor G (EF-G), N-terminal (G) domain | 93.16 | |
| d1tq4a_ | 400 | Interferon-inducible GTPase {Mouse (Mus musculus) | 93.15 | |
| d1viaa_ | 161 | Shikimate kinase (AroK) {Campylobacter jejuni [Tax | 93.13 | |
| d1e6ca_ | 170 | Shikimate kinase (AroK) {Erwinia chrysanthemi [Tax | 93.08 | |
| d2vp4a1 | 197 | Deoxyribonucleoside kinase {Fruit fly (Drosophila | 93.07 | |
| d1t9ha2 | 231 | Probable GTPase EngC (YjeQ), C-terminal domain {Ba | 93.04 | |
| d1e6ca_ | 170 | Shikimate kinase (AroK) {Erwinia chrysanthemi [Tax | 92.99 | |
| d1nksa_ | 194 | Adenylate kinase {Archaeon Sulfolobus acidocaldari | 92.97 | |
| d1uf9a_ | 191 | Dephospho-CoA kinase {Thermus thermophilus [TaxId: | 92.9 | |
| d1htwa_ | 158 | Hypothetical protein HI0065 {Haemophilus influenza | 92.89 | |
| d1zina1 | 182 | Adenylate kinase {Bacillus stearothermophilus [Tax | 92.87 | |
| d1zaka1 | 189 | Adenylate kinase {Maize (Zea mays) [TaxId: 4577]} | 92.87 | |
| d1puia_ | 188 | Probable GTPase EngB {Escherichia coli [TaxId: 562 | 92.85 | |
| d1sq5a_ | 308 | Pantothenate kinase PanK {Escherichia coli [TaxId: | 92.75 | |
| d1h65a_ | 257 | Chloroplast protein translocon GTPase Toc34 {Garde | 92.71 | |
| d1okkd2 | 207 | GTPase domain of the signal recognition particle r | 92.67 | |
| d1szpa2 | 251 | DNA repair protein Rad51, catalytic domain {Baker' | 92.6 | |
| d2iyva1 | 165 | Shikimate kinase (AroK) {Mycobacterium tuberculosi | 92.58 | |
| d1teva_ | 194 | UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606] | 92.57 | |
| d1p5zb_ | 241 | Deoxycytidine kinase {Human (Homo sapiens) [TaxId: | 92.56 | |
| d1wb1a4 | 179 | Elongation factor SelB, N-terminal domain {Methano | 92.53 | |
| d1zj6a1 | 177 | ADP-ribosylation factor {Human (Homo sapiens), ARL | 92.48 | |
| d1s3ga1 | 182 | Adenylate kinase {Bacillus globisporus [TaxId: 145 | 92.48 | |
| d1bifa1 | 213 | 6-phosphofructo-2-kinase/fructose-2,6-bisphosphata | 92.48 | |
| d2cxxa1 | 184 | GTP-binding protein engB {Pyrococcus horikoshii [T | 92.42 | |
| d2erxa1 | 171 | di-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | 92.41 | |
| d1uj2a_ | 213 | Uridine-cytidine kinase 2 {Human (Homo sapiens) [T | 92.37 | |
| d4tmka_ | 210 | Thymidylate kinase {Escherichia coli [TaxId: 562]} | 92.36 | |
| d1nn5a_ | 209 | Thymidylate kinase {Human (Homo sapiens) [TaxId: 9 | 92.35 | |
| d1jjva_ | 205 | Dephospho-CoA kinase {Haemophilus influenzae [TaxI | 92.34 | |
| d1x6va3 | 195 | Adenosine-5'phosphosulfate kinase (APS kinase) {Hu | 92.25 | |
| d2gnoa2 | 198 | gamma subunit of DNA polymerase III, N-domain {The | 92.2 | |
| d1nrjb_ | 209 | Signal recognition particle receptor beta-subunit | 92.19 | |
| d1viaa_ | 161 | Shikimate kinase (AroK) {Campylobacter jejuni [Tax | 92.13 | |
| d1ak2a1 | 190 | Adenylate kinase {Cow (Bos taurus), mitochondrial | 92.08 | |
| d1m7ga_ | 208 | Adenosine-5'phosphosulfate kinase (APS kinase) {Fu | 92.05 | |
| d1xzpa2 | 160 | TrmE GTPase domain {Thermotoga maritima [TaxId: 23 | 92.03 | |
| d1bifa1 | 213 | 6-phosphofructo-2-kinase/fructose-2,6-bisphosphata | 91.97 | |
| d1e4va1 | 179 | Adenylate kinase {Escherichia coli [TaxId: 562]} | 91.93 | |
| d1pzna2 | 254 | DNA repair protein Rad51, catalytic domain {Archae | 91.92 | |
| d2fh5b1 | 207 | Signal recognition particle receptor beta-subunit | 91.85 | |
| d1okkd2 | 207 | GTPase domain of the signal recognition particle r | 91.83 | |
| d1tq4a_ | 400 | Interferon-inducible GTPase {Mouse (Mus musculus) | 91.78 | |
| d2erya1 | 171 | r-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | 91.78 | |
| d1lnza2 | 185 | Obg GTP-binding protein middle domain {Bacillus su | 91.76 | |
| d1mkya1 | 171 | Probable GTPase Der, N-terminal and middle domains | 91.65 | |
| d1ukza_ | 196 | Uridylate kinase {Baker's yeast (Saccharomyces cer | 91.64 | |
| d2gj8a1 | 161 | Probable tRNA modification GTPase TrmE (MnmE), G d | 91.63 | |
| d2p67a1 | 327 | LAO/AO transport system kinase ArgK {Escherichia c | 91.63 | |
| d1v5wa_ | 258 | Meiotic recombination protein DMC1/LIM15 homolog { | 91.6 | |
| d2cdna1 | 181 | Adenylate kinase {Mycobacterium tuberculosis [TaxI | 91.52 | |
| d1ls1a2 | 207 | GTPase domain of the signal sequence recognition p | 91.52 | |
| d1m7ga_ | 208 | Adenosine-5'phosphosulfate kinase (APS kinase) {Fu | 91.51 | |
| d1q3ta_ | 223 | CMP kinase {Streptococcus pneumoniae [TaxId: 1313] | 91.49 | |
| d2iyva1 | 165 | Shikimate kinase (AroK) {Mycobacterium tuberculosi | 91.47 | |
| d2i1qa2 | 258 | DNA repair protein Rad51, catalytic domain {Archae | 91.45 | |
| d1tf7a1 | 242 | Circadian clock protein KaiC {Synechococcus sp. st | 91.45 | |
| d1tf7a1 | 242 | Circadian clock protein KaiC {Synechococcus sp. st | 91.43 | |
| d1vmaa2 | 213 | GTPase domain of the signal recognition particle r | 91.36 | |
| d3raba_ | 169 | Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]} | 91.35 | |
| d1in4a2 | 238 | Holliday junction helicase RuvB {Thermotoga mariti | 91.29 | |
| d1tmka_ | 214 | Thymidylate kinase {Baker's yeast (Saccharomyces c | 91.28 | |
| d1r8sa_ | 160 | ADP-ribosylation factor {Human (Homo sapiens), ARF | 91.22 | |
| d1ky3a_ | 175 | Rab-related protein ypt7p {Baker's yeast (Saccharo | 91.21 | |
| d1ckea_ | 225 | CMP kinase {Escherichia coli [TaxId: 562]} | 91.2 | |
| d1egaa1 | 179 | GTPase Era, N-terminal domain {Escherichia coli [T | 91.19 | |
| d1fzqa_ | 176 | ADP-ribosylation factor {Mouse (Mus musculus), ARL | 91.14 | |
| d1ctqa_ | 166 | cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9 | 91.11 | |
| d1sxja2 | 253 | Replication factor C1 {Baker's yeast (Saccharomyce | 91.1 | |
| d1a7ja_ | 288 | Phosphoribulokinase {Rhodobacter sphaeroides [TaxI | 91.03 | |
| d1udxa2 | 180 | Obg GTP-binding protein middle domain {Thermus the | 91.01 | |
| d1akya1 | 180 | Adenylate kinase {Baker's yeast (Saccharomyces cer | 91.01 | |
| d1vhta_ | 208 | Dephospho-CoA kinase {Escherichia coli [TaxId: 562 | 90.99 | |
| d1zd9a1 | 164 | ADP-ribosylation factor {Human (Homo sapiens), ARL | 90.97 | |
| d1f6ba_ | 186 | SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: | 90.91 | |
| d2atva1 | 168 | Ras-like estrogen-regulated growth inhibitor, RERG | 90.89 | |
| d2ak3a1 | 189 | Adenylate kinase {Cow (Bos taurus), mitochondrial | 90.82 | |
| d1wf3a1 | 178 | GTPase Era, N-terminal domain {Thermus thermophilu | 90.82 | |
| d1yzqa1 | 164 | Rab6 {Human (Homo sapiens) [TaxId: 9606]} | 90.8 | |
| d1zaka1 | 189 | Adenylate kinase {Maize (Zea mays) [TaxId: 4577]} | 90.77 | |
| d1z2aa1 | 164 | Rab23 {Mouse (Mus musculus) [TaxId: 10090]} | 90.71 | |
| d2f9la1 | 175 | Rab11b {Human (Homo sapiens) [TaxId: 9606]} | 90.66 | |
| d1u94a1 | 263 | RecA protein, ATPase-domain {Escherichia coli [Tax | 90.64 | |
| d1nksa_ | 194 | Adenylate kinase {Archaeon Sulfolobus acidocaldari | 90.59 | |
| d2qy9a2 | 211 | GTPase domain of the signal recognition particle r | 90.58 | |
| d2qy9a2 | 211 | GTPase domain of the signal recognition particle r | 90.58 | |
| d1g7sa4 | 227 | Initiation factor IF2/eIF5b, N-terminal (G) domain | 90.53 | |
| d1upta_ | 169 | ADP-ribosylation factor {Human (Homo sapiens), ARL | 90.45 | |
| d1yj5a2 | 172 | 5' polynucleotide kinase-3' phosphatase, C-termina | 90.43 | |
| d1qf9a_ | 194 | UMP/CMP kinase {Dictyostelium discoideum [TaxId: 4 | 90.4 | |
| d2fnaa2 | 283 | Archaeal ATPase SSO1545 {Sulfolobus solfataricus [ | 90.38 | |
| d2a5ja1 | 173 | Rab2b {Human (Homo sapiens) [TaxId: 9606]} | 90.35 | |
| d1g16a_ | 166 | Rab-related protein Sec4 {Baker's yeast (Saccharom | 90.32 | |
| d1puia_ | 188 | Probable GTPase EngB {Escherichia coli [TaxId: 562 | 90.31 | |
| d1xtqa1 | 167 | GTP-binding protein RheB {Human (Homo sapiens) [Ta | 90.31 | |
| d2f7sa1 | 186 | Rab27b {Human (Homo sapiens) [TaxId: 9606]} | 90.24 | |
| d1kaoa_ | 167 | Rap2a {Human (Homo sapiens) [TaxId: 9606]} | 90.22 | |
| d2vp4a1 | 197 | Deoxyribonucleoside kinase {Fruit fly (Drosophila | 90.18 | |
| d2qtvb1 | 166 | SAR1 {Baker's yeast (Saccharomyces cerevisiae) [Ta | 90.16 | |
| d1lv7a_ | 256 | AAA domain of cell division protein FtsH {Escheric | 90.16 | |
| d1vg8a_ | 184 | Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]} | 90.15 | |
| d1iqpa2 | 231 | Replication factor C {Archaeon Pyrococcus furiosus | 90.06 | |
| d1ls1a2 | 207 | GTPase domain of the signal sequence recognition p | 90.05 | |
| d1zina1 | 182 | Adenylate kinase {Bacillus stearothermophilus [Tax | 90.04 | |
| d2g3ya1 | 172 | GTP-binding protein GEM {Human (Homo sapiens) [Tax | 89.97 | |
| d2gjsa1 | 168 | Rad {Human (Homo sapiens) [TaxId: 9606]} | 89.96 | |
| d1a1va1 | 136 | HCV helicase domain {Human hepatitis C virus (HCV) | 89.94 | |
| d1ofha_ | 309 | HslU {Haemophilus influenzae [TaxId: 727]} | 89.93 | |
| d1yrba1 | 244 | ATP(GTP)-binding protein PAB0955 {Pyrococcus abyss | 89.92 | |
| d1ixsb2 | 239 | Holliday junction helicase RuvB {Thermus thermophi | 89.79 | |
| d1knxa2 | 177 | HPr kinase HprK C-terminal domain {Mycoplasma pneu | 89.79 | |
| d1u8za_ | 168 | Ras-related protein RalA {Cotton-top tamarin (Sagu | 89.74 | |
| d1z06a1 | 165 | Rab-33b {Mouse (Mus musculus) [TaxId: 10090]} | 89.68 | |
| d1vmaa2 | 213 | GTPase domain of the signal recognition particle r | 89.62 | |
| d1kk1a3 | 195 | Initiation factor eIF2 gamma subunit, N-terminal ( | 89.57 | |
| d1x1ra1 | 169 | Ras-related protein M-Ras (XRas) {Mouse (Mus muscu | 89.48 | |
| d2ew1a1 | 171 | Rab30 {Human (Homo sapiens) [TaxId: 9606]} | 89.44 | |
| d1z0fa1 | 166 | Rab14 {Human (Homo sapiens) [TaxId: 9606]} | 89.42 | |
| d1odfa_ | 286 | Hypothetical protein Ygr205W {Baker's yeast (Sacch | 89.37 | |
| d1gsia_ | 208 | Thymidylate kinase {Mycobacterium tuberculosis [Ta | 89.35 | |
| d1xzpa2 | 160 | TrmE GTPase domain {Thermotoga maritima [TaxId: 23 | 89.34 | |
| d1sq5a_ | 308 | Pantothenate kinase PanK {Escherichia coli [TaxId: | 89.33 | |
| d1gvnb_ | 273 | Plasmid maintenance system epsilon/zeta, toxin zet | 89.29 | |
| d1s3ga1 | 182 | Adenylate kinase {Bacillus globisporus [TaxId: 145 | 89.28 | |
| d2erxa1 | 171 | di-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | 89.27 | |
| d1q3ta_ | 223 | CMP kinase {Streptococcus pneumoniae [TaxId: 1313] | 89.25 | |
| d1sxjd2 | 237 | Replication factor C2 {Baker's yeast (Saccharomyce | 89.24 | |
| d1fnna2 | 276 | CDC6, N-domain {Archaeon Pyrobaculum aerophilum [T | 89.09 | |
| d1wmsa_ | 174 | Rab9a {Human (Homo sapiens) [TaxId: 9606]} | 89.07 | |
| d1xp8a1 | 268 | RecA protein, ATPase-domain {Deinococcus radiodura | 89.06 | |
| d1j8yf2 | 211 | GTPase domain of the signal sequence recognition p | 89.02 | |
| d1teva_ | 194 | UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606] | 88.97 | |
| d1z0ja1 | 167 | Rab-22a {Mouse (Mus musculus) [TaxId: 10090]} | 88.92 | |
| d2qm8a1 | 323 | Metallochaperone MeaB {Methylobacterium extorquens | 88.88 | |
| d1moza_ | 182 | ADP-ribosylation factor {Baker's yeast (Saccharomy | 88.83 | |
| d1kmqa_ | 177 | RhoA {Human (Homo sapiens) [TaxId: 9606]} | 88.79 | |
| d1ixza_ | 247 | AAA domain of cell division protein FtsH {Thermus | 88.69 | |
| d1m7ba_ | 179 | RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]} | 88.61 | |
| d1z08a1 | 167 | Rab21 {Human (Homo sapiens) [TaxId: 9606]} | 88.61 | |
| d1d2na_ | 246 | Hexamerization domain of N-ethylmalemide-sensitive | 88.6 | |
| d1x3sa1 | 177 | Rab18 {Human (Homo sapiens) [TaxId: 9606]} | 88.54 | |
| d1mh1a_ | 183 | Rac {Human (Homo sapiens) [TaxId: 9606]} | 88.54 | |
| d1in4a2 | 238 | Holliday junction helicase RuvB {Thermotoga mariti | 88.5 | |
| d2fn4a1 | 173 | r-Ras {Human (Homo sapiens) [TaxId: 9606]} | 88.42 | |
| d1ek0a_ | 170 | Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [T | 88.41 | |
| d2bmea1 | 174 | Rab4a {Human (Homo sapiens) [TaxId: 9606]} | 88.37 | |
| d1e0sa_ | 173 | ADP-ribosylation factor {Human (Homo sapiens), ARF | 88.31 | |
| d2cdna1 | 181 | Adenylate kinase {Mycobacterium tuberculosis [TaxI | 88.29 | |
| d1i2ma_ | 170 | Ran {Human (Homo sapiens) [TaxId: 9606]} | 88.28 | |
| d1r2qa_ | 170 | Rab5a {Human (Homo sapiens) [TaxId: 9606]} | 88.27 | |
| d1kkma_ | 176 | HPr kinase HprK C-terminal domain {Lactobacillus c | 88.22 | |
| d1ofha_ | 309 | HslU {Haemophilus influenzae [TaxId: 727]} | 88.2 | |
| d1sxja2 | 253 | Replication factor C1 {Baker's yeast (Saccharomyce | 88.19 | |
| d2bcgy1 | 194 | GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisi | 88.13 | |
| d1p5zb_ | 241 | Deoxycytidine kinase {Human (Homo sapiens) [TaxId: | 88.01 | |
| d1sxjd2 | 237 | Replication factor C2 {Baker's yeast (Saccharomyce | 88.0 | |
| d2fu5c1 | 173 | Rab8a {Mouse (Mus musculus) [TaxId: 10090]} | 87.97 | |
| d1xpua3 | 289 | Transcription termination factor Rho, ATPase domai | 87.81 | |
| d1jwyb_ | 306 | Dynamin G domain {Dictyostelium discoideum [TaxId: | 87.76 | |
| d1e4va1 | 179 | Adenylate kinase {Escherichia coli [TaxId: 562]} | 87.69 | |
| d2qn6a3 | 205 | Initiation factor eIF2 gamma subunit, N-terminal ( | 87.55 | |
| d2akab1 | 299 | Dynamin G domain {Rat (Rattus norvegicus) [TaxId: | 87.49 | |
| d1ixsb2 | 239 | Holliday junction helicase RuvB {Thermus thermophi | 87.48 | |
| d1wb1a4 | 179 | Elongation factor SelB, N-terminal domain {Methano | 87.39 | |
| d1u8za_ | 168 | Ras-related protein RalA {Cotton-top tamarin (Sagu | 87.35 | |
| d1u94a1 | 263 | RecA protein, ATPase-domain {Escherichia coli [Tax | 87.34 | |
| d3adka_ | 194 | Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]} | 87.28 | |
| d1xtqa1 | 167 | GTP-binding protein RheB {Human (Homo sapiens) [Ta | 87.23 | |
| d2g6ba1 | 170 | Rab26 {Human (Homo sapiens) [TaxId: 9606]} | 87.14 | |
| d1c1ya_ | 167 | Rap1A {Human (Homo sapiens) [TaxId: 9606]} | 87.04 | |
| d1uf9a_ | 191 | Dephospho-CoA kinase {Thermus thermophilus [TaxId: | 87.01 | |
| d2p67a1 | 327 | LAO/AO transport system kinase ArgK {Escherichia c | 87.0 | |
| d1azta2 | 221 | Transducin (alpha subunit) {Cow (Bos taurus) [TaxI | 86.99 | |
| d2c78a3 | 204 | Elongation factor Tu (EF-Tu), N-terminal (G) domai | 86.97 | |
| d1e32a2 | 258 | Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu | 86.96 | |
| d1fnna2 | 276 | CDC6, N-domain {Archaeon Pyrobaculum aerophilum [T | 86.91 | |
| d1deka_ | 241 | Deoxynucleoside monophosphate kinase {Bacteriophag | 86.85 | |
| d1ckea_ | 225 | CMP kinase {Escherichia coli [TaxId: 562]} | 86.83 | |
| d1akya1 | 180 | Adenylate kinase {Baker's yeast (Saccharomyces cer | 86.82 | |
| d1kkma_ | 176 | HPr kinase HprK C-terminal domain {Lactobacillus c | 86.8 | |
| d2bmja1 | 175 | Centaurin gamma 1, G domain {Human (Homo sapiens) | 86.8 | |
| d1ksha_ | 165 | ADP-ribosylation factor {Mouse (Mus musculus), ARL | 86.79 | |
| d1f5na2 | 277 | Interferon-induced guanylate-binding protein 1 (GB | 86.71 | |
| d1sxjb2 | 224 | Replication factor C4 {Baker's yeast (Saccharomyce | 86.58 | |
| d1knxa2 | 177 | HPr kinase HprK C-terminal domain {Mycoplasma pneu | 86.2 | |
| d2atxa1 | 185 | RhoQ {Human (Homo sapiens) [TaxId: 9606]} | 86.19 | |
| d1svma_ | 362 | Papillomavirus large T antigen helicase domain {Si | 86.18 | |
| d2c78a3 | 204 | Elongation factor Tu (EF-Tu), N-terminal (G) domai | 86.06 | |
| d1zj6a1 | 177 | ADP-ribosylation factor {Human (Homo sapiens), ARL | 85.92 | |
| d1odfa_ | 286 | Hypothetical protein Ygr205W {Baker's yeast (Sacch | 85.9 | |
| d1jjva_ | 205 | Dephospho-CoA kinase {Haemophilus influenzae [TaxI | 85.86 | |
| d1ko7a2 | 169 | HPr kinase HprK C-terminal domain {Staphylococcus | 85.73 | |
| d2atva1 | 168 | Ras-like estrogen-regulated growth inhibitor, RERG | 85.58 | |
| d1g41a_ | 443 | HslU {Haemophilus influenzae [TaxId: 727]} | 85.5 | |
| d2fh5b1 | 207 | Signal recognition particle receptor beta-subunit | 85.47 | |
| d2ngra_ | 191 | CDC42 {Human (Homo sapiens) [TaxId: 9606]} | 85.46 | |
| d1sxjc2 | 227 | Replication factor C3 {Baker's yeast (Saccharomyce | 85.41 | |
| d3raba_ | 169 | Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]} | 85.16 | |
| d2ocpa1 | 241 | Deoxyguanosine kinase {Human (Homo sapiens) [TaxId | 85.16 | |
| d2ak3a1 | 189 | Adenylate kinase {Cow (Bos taurus), mitochondrial | 84.82 | |
| d1svsa1 | 195 | Transducin (alpha subunit) {Rat (Rattus norvegicus | 84.69 | |
| d1ky3a_ | 175 | Rab-related protein ypt7p {Baker's yeast (Saccharo | 84.63 | |
| d1ko7a2 | 169 | HPr kinase HprK C-terminal domain {Staphylococcus | 84.58 | |
| d1zcba2 | 200 | Transducin (alpha subunit) {Mouse (Mus musculus) [ | 84.57 | |
| d1d2na_ | 246 | Hexamerization domain of N-ethylmalemide-sensitive | 84.41 | |
| d1nija1 | 222 | Hypothetical protein YjiA, N-terminal domain {Esch | 84.21 | |
| d1mo6a1 | 269 | RecA protein, ATPase-domain {Mycobacterium tubercu | 83.99 | |
| d1z2aa1 | 164 | Rab23 {Mouse (Mus musculus) [TaxId: 10090]} | 83.88 | |
| d2dy1a2 | 267 | Elongation factor G (EF-G), N-terminal (G) domain | 83.81 | |
| d1mo6a1 | 269 | RecA protein, ATPase-domain {Mycobacterium tubercu | 83.73 | |
| d1w5sa2 | 287 | CDC6-like protein APE0152, N-terminal domain {Aero | 83.64 | |
| d1vg8a_ | 184 | Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]} | 83.43 | |
| d1g8pa_ | 333 | ATPase subunit of magnesium chelatase, BchI {Rhodo | 83.41 | |
| d1zd9a1 | 164 | ADP-ribosylation factor {Human (Homo sapiens), ARL | 83.26 | |
| d1gsia_ | 208 | Thymidylate kinase {Mycobacterium tuberculosis [Ta | 83.23 | |
| d1xp8a1 | 268 | RecA protein, ATPase-domain {Deinococcus radiodura | 83.22 | |
| d2erya1 | 171 | r-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | 83.19 | |
| d1z08a1 | 167 | Rab21 {Human (Homo sapiens) [TaxId: 9606]} | 83.1 | |
| d2jdid3 | 276 | Central domain of beta subunit of F1 ATP synthase | 83.06 | |
| d1g41a_ | 443 | HslU {Haemophilus influenzae [TaxId: 727]} | 83.05 | |
| d2bv3a2 | 276 | Elongation factor G (EF-G), N-terminal (G) domain | 83.02 | |
| d1fzqa_ | 176 | ADP-ribosylation factor {Mouse (Mus musculus), ARL | 82.85 | |
| d2bmja1 | 175 | Centaurin gamma 1, G domain {Human (Homo sapiens) | 82.83 | |
| d1kaoa_ | 167 | Rap2a {Human (Homo sapiens) [TaxId: 9606]} | 82.56 | |
| d1n0wa_ | 242 | DNA repair protein Rad51, catalytic domain {Human | 82.54 | |
| d1wp9a1 | 200 | putative ATP-dependent RNA helicase PF2015 {Pyroco | 82.38 | |
| d1a7ja_ | 288 | Phosphoribulokinase {Rhodobacter sphaeroides [TaxI | 82.03 | |
| d1ctqa_ | 166 | cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9 | 81.94 | |
| d2fnaa2 | 283 | Archaeal ATPase SSO1545 {Sulfolobus solfataricus [ | 81.8 | |
| d1wxqa1 | 319 | GTP-binding protein PH0525 {Pyrococcus horikoshii | 81.65 | |
| d1vhta_ | 208 | Dephospho-CoA kinase {Escherichia coli [TaxId: 562 | 81.2 | |
| d2f9la1 | 175 | Rab11b {Human (Homo sapiens) [TaxId: 9606]} | 81.19 | |
| d2gjsa1 | 168 | Rad {Human (Homo sapiens) [TaxId: 9606]} | 81.17 | |
| d2a5ja1 | 173 | Rab2b {Human (Homo sapiens) [TaxId: 9606]} | 80.99 | |
| d1ni3a1 | 296 | YchF GTP-binding protein N-terminal domain {Fissio | 80.94 | |
| d2f7sa1 | 186 | Rab27b {Human (Homo sapiens) [TaxId: 9606]} | 80.89 | |
| d1e32a2 | 258 | Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu | 80.88 | |
| d2ew1a1 | 171 | Rab30 {Human (Homo sapiens) [TaxId: 9606]} | 80.72 | |
| d1l8qa2 | 213 | Chromosomal replication initiation factor DnaA {Aq | 80.59 | |
| d1x1ra1 | 169 | Ras-related protein M-Ras (XRas) {Mouse (Mus muscu | 80.56 | |
| d2g3ya1 | 172 | GTP-binding protein GEM {Human (Homo sapiens) [Tax | 80.42 | |
| d1wmsa_ | 174 | Rab9a {Human (Homo sapiens) [TaxId: 9606]} | 80.4 | |
| d1nn5a_ | 209 | Thymidylate kinase {Human (Homo sapiens) [TaxId: 9 | 80.12 | |
| d1tmka_ | 214 | Thymidylate kinase {Baker's yeast (Saccharomyces c | 80.1 | |
| d1g16a_ | 166 | Rab-related protein Sec4 {Baker's yeast (Saccharom | 80.08 | |
| d1w44a_ | 321 | NTPase P4 {Bacteriophage phi-12 [TaxId: 161736]} | 80.03 |
| >d2pmka1 c.37.1.12 (A:467-707) Haemolysin B ATP-binding protein {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Haemolysin B ATP-binding protein species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=6.9e-56 Score=474.68 Aligned_cols=222 Identities=28% Similarity=0.389 Sum_probs=207.2
Q ss_pred EEEeeeEEEeCCCCCCCccccceEEeeCCeEEEEEcCCCCChHHHHHHHhCCCCCCCcEEEEcCe-------------EE
Q 037346 358 IEIIDGSFSWDFSSPNPTLRNINLKVFHGMRVAVCGTVGSGKSSCLSCILGGVPKESGIIRLCGT-------------KA 424 (1156)
Q Consensus 358 i~~~~~~f~~~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKSTll~~i~g~~~~~~G~i~~~g~-------------~~ 424 (1156)
|+|+||+|+|+. .++++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|. ++
T Consensus 2 I~~~nvsf~Y~~-~~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLl~ll~gl~~p~~G~I~i~g~~i~~~~~~~lr~~i~ 80 (241)
T d2pmka1 2 ITFRNIRFRYKP-DSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVLIDGHDLALADPNWLRRQVG 80 (241)
T ss_dssp EEEEEEEEESST-TSCEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEETTTSCHHHHHHHEE
T ss_pred eEEEEEEEEeCC-CCcceEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhcCCCCCCEEEECCEEecccchhhhhceEE
Confidence 899999999974 3457999999999999999999999999999999999999999999999993 79
Q ss_pred EEecCCcCCCccHHHHhhcCCC-CCHHHHHHHHHHhCCchhhhhCCCCCccccccCCCCCCHHHHHHHHHHHhhccCCCe
Q 037346 425 YVAQSPWIQSGKIEENILFGKE-MDRERYERVLEACSLKKDLEVLPFGDQTIIGERGINLSGGQKQRIQIARPLYQDADI 503 (1156)
Q Consensus 425 ~v~Q~~~~~~~ti~eni~~~~~-~~~~~~~~~~~~~~l~~~~~~~~~g~~t~v~~~g~~LSgGqkqRi~lAral~~~~~i 503 (1156)
||||+|++|++||+|||.++.+ .+.+++.++++.+++.+++..+|.|++|.+|++|.+|||||||||+|||||+++|+|
T Consensus 81 ~v~Q~~~lf~~Ti~eNi~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~t~i~~~g~~LSGGq~QRvalARal~~~p~i 160 (241)
T d2pmka1 81 VVLQDNVLLNRSIIDNISLANPGMSVEKVIYAAKLAGAHDFISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKI 160 (241)
T ss_dssp EECSSCCCTTSBHHHHHCTTSTTCCHHHHHHHHHHHTCHHHHTTSTTGGGSBCSTTTTCCCHHHHHHHHHHHHHTTCCSE
T ss_pred EEecccccCCccccccccccCccccHHHHHHHHHHHhhHHHHHhhhcchhhhcCCCCCccCHHHHHHHhhhhhhhcccch
Confidence 9999999999999999999875 678899999999999999999999999999999999999999999999999999999
Q ss_pred eeeeCCCCCcCHHHHHHHHHHHHh-cCCCEEEEEccCCCccccCCEEEEEeCCeEEEccChHHHHhcC-cchHHHHHhh
Q 037346 504 FLLDDPFSPVDDHTGAHLFKFCWV-SSSKTVIYATHQVEFLPAADLILVIKDGKITQAGKYSDILNSG-TDFMELVGAH 580 (1156)
Q Consensus 504 lllDep~s~lD~~~~~~i~~~~~~-~~~~tvi~vtH~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~~-~~~~~~~~~~ 580 (1156)
||||||||+||+.+++.+++.+.. .+++|+|+||||++.++.||+|++|++|+|++.|+|+++++++ ..|.++++.+
T Consensus 161 lilDEpts~LD~~~~~~i~~~l~~l~~~~Tvi~itH~l~~~~~~D~i~vl~~G~Iv~~G~~~ell~~~~~~y~~l~~~Q 239 (241)
T d2pmka1 161 LIFDEATSALDYESEHVIMRNMHKICKGRTVIIIAHRLSTVKNADRIIVMEKGKIVEQGKHKELLSEPESLYSYLYQLQ 239 (241)
T ss_dssp EEECCCCSCCCHHHHHHHHHHHHHHHTTSEEEEECSSGGGGTTSSEEEEEETTEEEEEECHHHHHHSTTCHHHHHHHHH
T ss_pred hhhhCCccccCHHHHHHHHHHHHHHhCCCEEEEEECCHHHHHhCCEEEEEECCEEEEECCHHHHHhCCCCHHHHHHHHh
Confidence 999999999999999999887755 5789999999999999999999999999999999999999764 4677777543
|
| >d2hyda1 c.37.1.12 (A:324-578) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative multidrug export ATP-binding/permease protein SAV1866 species: Staphylococcus aureus [TaxId: 1280]
Probab=100.00 E-value=5.2e-56 Score=479.06 Aligned_cols=225 Identities=30% Similarity=0.441 Sum_probs=210.9
Q ss_pred CCccEEEeeeEEEeCCCCCCCccccceEEeeCCeEEEEEcCCCCChHHHHHHHhCCCCCCCcEEEEcCe-----------
Q 037346 354 SDTAIEIIDGSFSWDFSSPNPTLRNINLKVFHGMRVAVCGTVGSGKSSCLSCILGGVPKESGIIRLCGT----------- 422 (1156)
Q Consensus 354 ~~~~i~~~~~~f~~~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKSTll~~i~g~~~~~~G~i~~~g~----------- 422 (1156)
.++.|+++||+|+|+.. +.++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|.
T Consensus 13 ~~g~I~~~nvsf~Y~~~-~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~gl~~p~~G~I~i~g~~i~~~~~~~lr 91 (255)
T d2hyda1 13 KQGRIDIDHVSFQYNDN-EAPILKDINLSIEKGETVAFVGMSGGGKSTLINLIPRFYDVTSGQILIDGHNIKDFLTGSLR 91 (255)
T ss_dssp CSCCEEEEEEEECSCSS-SCCSEEEEEEEECTTCEEEEECSTTSSHHHHHTTTTTSSCCSEEEEEETTEEGGGSCHHHHH
T ss_pred CCCEEEEEEEEEEeCCC-CCcceeceEEEEcCCCEEEEECCCCCcHHHHHHHHHhcCCccccccccCCEEcccCCHHHhh
Confidence 45679999999999753 468999999999999999999999999999999999999999999999983
Q ss_pred --EEEEecCCcCCCccHHHHhhcCCC-CCHHHHHHHHHHhCCchhhhhCCCCCccccccCCCCCCHHHHHHHHHHHhhcc
Q 037346 423 --KAYVAQSPWIQSGKIEENILFGKE-MDRERYERVLEACSLKKDLEVLPFGDQTIIGERGINLSGGQKQRIQIARPLYQ 499 (1156)
Q Consensus 423 --~~~v~Q~~~~~~~ti~eni~~~~~-~~~~~~~~~~~~~~l~~~~~~~~~g~~t~v~~~g~~LSgGqkqRi~lAral~~ 499 (1156)
++||+|+|++|++||+|||.||.+ .+++++.++++.+++.+++..+|+|++|.+|++|.+|||||||||+|||||++
T Consensus 92 ~~i~~v~Q~~~lf~~Ti~eNi~~g~~~~~~~~~~~al~~~~l~~~i~~lp~gl~t~i~~~g~~LSgGq~QRi~iARal~~ 171 (255)
T d2hyda1 92 NQIGLVQQDNILFSDTVKENILLGRPTATDEEVVEAAKMANAHDFIMNLPQGYDTEVGERGVKLSGGQKQRLSIARIFLN 171 (255)
T ss_dssp HTEEEECSSCCCCSSBHHHHHGGGCSSCCHHHHHHHHHHTTCHHHHHTSTTGGGCBCCGGGTTSCHHHHHHHHHHHHHHH
T ss_pred heeeeeeccccCCCCCHHHHHhccCcCCCHHHHHHHHHHhCCHHHHHhccccccchhcCCCCCcCHHHHHHHHHHHHHhc
Confidence 799999999999999999999975 57888999999999999999999999999999999999999999999999999
Q ss_pred CCCeeeeeCCCCCcCHHHHHHHHHHHHh-cCCCEEEEEccCCCccccCCEEEEEeCCeEEEccChHHHHhcCcchHHHHH
Q 037346 500 DADIFLLDDPFSPVDDHTGAHLFKFCWV-SSSKTVIYATHQVEFLPAADLILVIKDGKITQAGKYSDILNSGTDFMELVG 578 (1156)
Q Consensus 500 ~~~illlDep~s~lD~~~~~~i~~~~~~-~~~~tvi~vtH~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~~~~~~~~~~ 578 (1156)
+|+|+|||||||+||+.+++.+++.+.. .+++|+|+||||++.++.||+|++|++|+|++.|+++|++++++.|.+++.
T Consensus 172 ~p~ililDEpts~LD~~t~~~i~~~l~~l~~~~TvI~itH~~~~~~~~D~ii~l~~G~iv~~G~~~eLl~~~~~y~~l~~ 251 (255)
T d2hyda1 172 NPPILILDEATSALDLESESIIQEALDVLSKDRTTLIVAHRLSTITHADKIVVIENGHIVETGTHRELIAKQGAYEHLYS 251 (255)
T ss_dssp CCSEEEEESTTTTCCHHHHHHHHHHHHHHTTTSEEEEECSSGGGTTTCSEEEEEETTEEEEEECHHHHHHTTSHHHHHHT
T ss_pred CCCEEEEeCccccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhCCEEEEEECCEEEEECCHHHHHhCCcHHHHHHH
Confidence 9999999999999999999999887654 568999999999999999999999999999999999999998888888875
Q ss_pred h
Q 037346 579 A 579 (1156)
Q Consensus 579 ~ 579 (1156)
.
T Consensus 252 ~ 252 (255)
T d2hyda1 252 I 252 (255)
T ss_dssp T
T ss_pred H
Confidence 4
|
| >d3b60a1 c.37.1.12 (A:329-581) Multidrug resistance ABC transporter MsbA, C-terminal domain {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Multidrug resistance ABC transporter MsbA, C-terminal domain species: Salmonella typhimurium [TaxId: 90371]
Probab=100.00 E-value=4.4e-55 Score=473.11 Aligned_cols=226 Identities=31% Similarity=0.438 Sum_probs=211.3
Q ss_pred CCccEEEeeeEEEeCCCCCCCccccceEEeeCCeEEEEEcCCCCChHHHHHHHhCCCCCCCcEEEEcCe-----------
Q 037346 354 SDTAIEIIDGSFSWDFSSPNPTLRNINLKVFHGMRVAVCGTVGSGKSSCLSCILGGVPKESGIIRLCGT----------- 422 (1156)
Q Consensus 354 ~~~~i~~~~~~f~~~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKSTll~~i~g~~~~~~G~i~~~g~----------- 422 (1156)
..+.|+|+||+|+|+.. +.++|+|+||+|++||++|||||||||||||+++|+|+++|++|+|.++|.
T Consensus 10 ~~g~I~~~nvsf~Y~~~-~~~~L~~isl~i~~Ge~iaivG~sGsGKSTLl~ll~gl~~p~~G~I~i~g~~i~~~~~~~~r 88 (253)
T d3b60a1 10 ATGDLEFRNVTFTYPGR-EVPALRNINLKIPAGKTVALVGRSGSGKSTIASLITRFYDIDEGHILMDGHDLREYTLASLR 88 (253)
T ss_dssp CCCCEEEEEEEECSSSS-SCCSEEEEEEEECTTCEEEEEECTTSSHHHHHHHHTTTTCCSEEEEEETTEETTTBCHHHHH
T ss_pred CceEEEEEEEEEEeCCC-CCceeeceEEEEcCCCEEEEECCCCChHHHHHHHHhcccCCCccEEEECCcccchhhhhhhh
Confidence 34579999999999753 468999999999999999999999999999999999999999999999993
Q ss_pred --EEEEecCCcCCCccHHHHhhcCC--CCCHHHHHHHHHHhCCchhhhhCCCCCccccccCCCCCCHHHHHHHHHHHhhc
Q 037346 423 --KAYVAQSPWIQSGKIEENILFGK--EMDRERYERVLEACSLKKDLEVLPFGDQTIIGERGINLSGGQKQRIQIARPLY 498 (1156)
Q Consensus 423 --~~~v~Q~~~~~~~ti~eni~~~~--~~~~~~~~~~~~~~~l~~~~~~~~~g~~t~v~~~g~~LSgGqkqRi~lAral~ 498 (1156)
++||||+|++|++|+++|+.++. ..+++++.++++.+++.++++.+|.|++|.+|++|.+|||||||||+|||||+
T Consensus 89 ~~i~~v~Q~~~l~~~ti~~n~~~~~~~~~~~~~i~~a~~~~~l~~~i~~l~~gl~t~~~~~~~~LSGGqkQRvaiARal~ 168 (253)
T d3b60a1 89 NQVALVSQNVHLFNDTVANNIAYARTEEYSREQIEEAARMAYAMDFINKMDNGLDTIIGENGVLLSGGQRQRIAIARALL 168 (253)
T ss_dssp HTEEEECSSCCCCSSBHHHHHHTTTTSCCCHHHHHHHHHTTTCHHHHHHSTTGGGSBCCTTSCSSCHHHHHHHHHHHHHH
T ss_pred heEEEEeeccccCCcchhhhhhhcCcccCCHHHHHHHHHHHhHHHHHHhccccchhhhcCCCCCcCHHHHHHHHHHHHHh
Confidence 79999999999999999999986 46788999999999999999999999999999999999999999999999999
Q ss_pred cCCCeeeeeCCCCCcCHHHHHHHHHHHHh-cCCCEEEEEccCCCccccCCEEEEEeCCeEEEccChHHHHhcCcchHHHH
Q 037346 499 QDADIFLLDDPFSPVDDHTGAHLFKFCWV-SSSKTVIYATHQVEFLPAADLILVIKDGKITQAGKYSDILNSGTDFMELV 577 (1156)
Q Consensus 499 ~~~~illlDep~s~lD~~~~~~i~~~~~~-~~~~tvi~vtH~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~~~~~~~~~ 577 (1156)
++|+|||||||||+||+.+++.+++.+.. .+++|+|+||||++.+..||+|++|++|+|++.|+|+|++++++.|.+++
T Consensus 169 ~~p~ililDEpts~LD~~~~~~i~~~l~~l~~~~Tvi~itH~l~~~~~~D~v~vl~~G~Iv~~G~~~eLl~~~~~y~~l~ 248 (253)
T d3b60a1 169 RDSPILILDEATSALDTESERAIQAALDELQKNRTSLVIAHRLSTIEQADEIVVVEDGIIVERGTHSELLAQHGVYAQLH 248 (253)
T ss_dssp HCCSEEEEETTTSSCCHHHHHHHHHHHHHHHTTSEEEEECSCGGGTTTCSEEEEEETTEEEEEECHHHHHHHTSSHHHHH
T ss_pred cCCCEEEeccccccCCHHHHHHHHHHHHHhccCCEEEEEECCHHHHHhCCEEEEEECCEEEEECCHHHHHhCCcHHHHHH
Confidence 99999999999999999999999887654 56899999999999999999999999999999999999999888899887
Q ss_pred Hhh
Q 037346 578 GAH 580 (1156)
Q Consensus 578 ~~~ 580 (1156)
..+
T Consensus 249 ~~Q 251 (253)
T d3b60a1 249 KMQ 251 (253)
T ss_dssp HHT
T ss_pred HHc
Confidence 653
|
| >d1jj7a_ c.37.1.12 (A:) Peptide transporter Tap1, C-terminal ABC domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Peptide transporter Tap1, C-terminal ABC domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=6.8e-55 Score=471.07 Aligned_cols=224 Identities=25% Similarity=0.373 Sum_probs=207.5
Q ss_pred CccEEEeeeEEEeCCCCCCCccccceEEeeCCeEEEEEcCCCCChHHHHHHHhCCCCCCCcEEEEcCe------------
Q 037346 355 DTAIEIIDGSFSWDFSSPNPTLRNINLKVFHGMRVAVCGTVGSGKSSCLSCILGGVPKESGIIRLCGT------------ 422 (1156)
Q Consensus 355 ~~~i~~~~~~f~~~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKSTll~~i~g~~~~~~G~i~~~g~------------ 422 (1156)
++.|+|+||+|+|+..++.++|+|+||+|++||+++||||||||||||+++|+|+++|++|+|.++|.
T Consensus 9 ~g~I~~~nvsf~Y~~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~li~gl~~p~~G~I~i~g~~i~~~~~~~~r~ 88 (251)
T d1jj7a_ 9 EGLVQFQDVSFAYPNRPDVLVLQGLTFTLRPGEVTALVGPNGSGKSTVAALLQNLYQPTGGQLLLDGKPLPQYEHRYLHR 88 (251)
T ss_dssp CCCEEEEEEEECCTTSTTCCSEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEEGGGBCHHHHHH
T ss_pred cceEEEEEEEEECCCCCCCEeEeceEEEEcCCCEEEEECCCCCcHHHHHHHHhcccCCCcCEEEECCEecchhhhHHHHH
Confidence 45799999999998656678999999999999999999999999999999999999999999999994
Q ss_pred -EEEEecCCcCCCccHHHHhhcCCC--CCHHHHHHHHHHhCCchhhhhCCCCCccccccCCCCCCHHHHHHHHHHHhhcc
Q 037346 423 -KAYVAQSPWIQSGKIEENILFGKE--MDRERYERVLEACSLKKDLEVLPFGDQTIIGERGINLSGGQKQRIQIARPLYQ 499 (1156)
Q Consensus 423 -~~~v~Q~~~~~~~ti~eni~~~~~--~~~~~~~~~~~~~~l~~~~~~~~~g~~t~v~~~g~~LSgGqkqRi~lAral~~ 499 (1156)
++||+|+|++|++||+|||.+|.. ...++..+..+.+++.+.+..+|.|++|.++++|.+|||||||||+|||||++
T Consensus 89 ~i~~v~Q~~~lf~~tv~eni~~g~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~~~i~~~~~~LSGGqkQRvaiARal~~ 168 (251)
T d1jj7a_ 89 QVAAVGQEPQVFGRSLQENIAYGLTQKPTMEEITAAAVKSGAHSFISGLPQGYDTEVDEAGSQLSGGQRQAVALARALIR 168 (251)
T ss_dssp HEEEECSSCCCCSSBHHHHHHCSCSSCCCHHHHHHHHHHHTCHHHHHTSTTGGGCBCCSSCSSSCHHHHHHHHHHHHHTT
T ss_pred HhhhccccccccCcchhhhhhhhhcccchHHHHHHHHHHHHHHHHHHhccccchhhHhccCccCChhHceEEEEeecccc
Confidence 799999999999999999999853 45667778888899999999999999999999999999999999999999999
Q ss_pred CCCeeeeeCCCCCcCHHHHHHHHHHHHh---cCCCEEEEEccCCCccccCCEEEEEeCCeEEEccChHHHHhcCcchHHH
Q 037346 500 DADIFLLDDPFSPVDDHTGAHLFKFCWV---SSSKTVIYATHQVEFLPAADLILVIKDGKITQAGKYSDILNSGTDFMEL 576 (1156)
Q Consensus 500 ~~~illlDep~s~lD~~~~~~i~~~~~~---~~~~tvi~vtH~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~~~~~~~~ 576 (1156)
+|+|+|||||||+||+.++..+++.+.. ..++|+|+||||++.++.||+|++|++|+|+++|+|+|+++.++.|.++
T Consensus 169 ~p~ililDEpTs~LD~~~~~~i~~~l~~l~~~~~~Tvi~itH~l~~~~~aDrI~vl~~G~iv~~Gt~~eLl~~~~~y~~l 248 (251)
T d1jj7a_ 169 KPCVLILDDATSALDANSQLQVEQLLYESPERYSRSVLLITQHLSLVEQADHILFLEGGAIREGGTHQQLMEKKGCYWAM 248 (251)
T ss_dssp CCSEEEEESTTTTCCHHHHHHHHHHHHTCGGGGGCEEEEECSCHHHHHTCSEEEEEETTEEEEEECHHHHHHHTSHHHHH
T ss_pred CCcEEEecCcCcccChhhHHHHHHHHHHHhhhcCCEEEEEeCCHHHHHhCCEEEEEECCEEEEECCHHHHHhCCcHHHHH
Confidence 9999999999999999999999887754 3489999999999999899999999999999999999999988888877
Q ss_pred HH
Q 037346 577 VG 578 (1156)
Q Consensus 577 ~~ 578 (1156)
++
T Consensus 249 ~~ 250 (251)
T d1jj7a_ 249 VQ 250 (251)
T ss_dssp HC
T ss_pred hc
Confidence 53
|
| >d1mv5a_ c.37.1.12 (A:) Multidrug resistance ABC transporter LmrA, C-terminal domain {Lactococcus lactis [TaxId: 1358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Multidrug resistance ABC transporter LmrA, C-terminal domain species: Lactococcus lactis [TaxId: 1358]
Probab=100.00 E-value=6.5e-55 Score=468.58 Aligned_cols=220 Identities=27% Similarity=0.427 Sum_probs=205.2
Q ss_pred EEEeeeEEEeCCCCCCCccccceEEeeCCeEEEEEcCCCCChHHHHHHHhCCCCCCCcEEEEcCe-------------EE
Q 037346 358 IEIIDGSFSWDFSSPNPTLRNINLKVFHGMRVAVCGTVGSGKSSCLSCILGGVPKESGIIRLCGT-------------KA 424 (1156)
Q Consensus 358 i~~~~~~f~~~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKSTll~~i~g~~~~~~G~i~~~g~-------------~~ 424 (1156)
|+++||+|+|+. ++++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|. ++
T Consensus 2 le~knvsf~Y~~--~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~ 79 (242)
T d1mv5a_ 2 LSARHVDFAYDD--SEQILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQPTAGEITIDGQPIDNISLENWRSQIG 79 (242)
T ss_dssp EEEEEEEECSSS--SSCSEEEEEEEECTTEEEEEECCTTSSHHHHHHHHTTSSCCSBSCEEETTEESTTTSCSCCTTTCC
T ss_pred EEEEEEEEECCC--CCceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHHhhCCCCCEEEECCEEeccccHHHHHhheE
Confidence 799999999973 457999999999999999999999999999999999999999999999984 69
Q ss_pred EEecCCcCCCccHHHHhhcCCC--CCHHHHHHHHHHhCCchhhhhCCCCCccccccCCCCCCHHHHHHHHHHHhhccCCC
Q 037346 425 YVAQSPWIQSGKIEENILFGKE--MDRERYERVLEACSLKKDLEVLPFGDQTIIGERGINLSGGQKQRIQIARPLYQDAD 502 (1156)
Q Consensus 425 ~v~Q~~~~~~~ti~eni~~~~~--~~~~~~~~~~~~~~l~~~~~~~~~g~~t~v~~~g~~LSgGqkqRi~lAral~~~~~ 502 (1156)
||||+|++|++||+||+.++.. .+++...++++.+++.+++..+|++++|.+|++|.+|||||||||+|||||+++|+
T Consensus 80 ~v~Q~~~lf~~ti~eNi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~LSGGqkQRv~iARal~~~p~ 159 (242)
T d1mv5a_ 80 FVSQDSAIMAGTIRENLTYGLEGDYTDEDLWQVLDLAFARSFVENMPDQLNTEVGERGVKISGGQRQRLAIARAFLRNPK 159 (242)
T ss_dssp EECCSSCCCCEEHHHHTTSCTTSCSCHHHHHHHHHHHTCTTTTTSSTTGGGCEESTTSBCCCHHHHHHHHHHHHHHHCCS
T ss_pred EEccccccCCcchhhheecccccccchhhHHHHHHHHHhhhhhccCcccccccccCCCCCCCHHHHHHHHHHHHHhcCCC
Confidence 9999999999999999998743 56788889999999999999999999999999999999999999999999999999
Q ss_pred eeeeeCCCCCcCHHHHHHHHHHHHh-cCCCEEEEEccCCCccccCCEEEEEeCCeEEEccChHHHHhcCcchHHHHHh
Q 037346 503 IFLLDDPFSPVDDHTGAHLFKFCWV-SSSKTVIYATHQVEFLPAADLILVIKDGKITQAGKYSDILNSGTDFMELVGA 579 (1156)
Q Consensus 503 illlDep~s~lD~~~~~~i~~~~~~-~~~~tvi~vtH~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~~~~~~~~~~~ 579 (1156)
|+|||||||+||+.++..+++.+.. .+|+|+|+||||++.+..||+|++|++|+|++.|+++|+++.++.|.+++..
T Consensus 160 ililDEpts~LD~~~~~~i~~~l~~l~~~~Tvi~itH~l~~~~~~D~i~vl~~G~iv~~G~~~eLl~~~~~y~~l~~~ 237 (242)
T d1mv5a_ 160 ILMLDEATASLDSESESMVQKALDSLMKGRTTLVIAHRLSTIVDADKIYFIEKGQITGSGKHNELVATHPLYAKYVSE 237 (242)
T ss_dssp EEEEECCSCSSCSSSCCHHHHHHHHHHTTSEEEEECCSHHHHHHCSEEEEEETTEECCCSCHHHHHHHCHHHHHHHHC
T ss_pred EEEecCCccccCHHHHHHHHHHHHHHcCCCEEEEEECCHHHHHhCCEEEEEECCEEEEECCHHHHHhCChHHHHHHHH
Confidence 9999999999999999998887644 4689999999999999889999999999999999999999988888887754
|
| >d2pmka1 c.37.1.12 (A:467-707) Haemolysin B ATP-binding protein {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Haemolysin B ATP-binding protein species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=8.3e-53 Score=450.72 Aligned_cols=205 Identities=24% Similarity=0.392 Sum_probs=189.7
Q ss_pred EEEEEEEEEEcCCCCceeeCCCCCCHHHHHHHHhhcccCCCceEEEcCeeCCCCChHHHhhcCeeeccccccccccchhc
Q 037346 948 VNIRHLQVRYAPNLPLVLRGRTGSGKSTLIQTLFRIVESTAGHILIDGKDISLIGLHDLRTRLSIIPQDPTMFEGTTRSN 1027 (1156)
Q Consensus 948 I~~~~Vsf~Y~~~~~~vL~G~SGsGKSTL~~lL~rl~~p~~G~I~idG~di~~i~~~~LR~~i~~VpQdp~LF~gTIr~N 1027 (1156)
..++||||..++++.++|.|+||||||||+++|+|+++|++|+|.|||+|+++++.+++|++|+||||+|.+|++||++|
T Consensus 17 ~vL~~isl~i~~Ge~vaIvG~sGsGKSTLl~ll~gl~~p~~G~I~i~g~~i~~~~~~~lr~~i~~v~Q~~~lf~~Ti~eN 96 (241)
T d2pmka1 17 VILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVLIDGHDLALADPNWLRRQVGVVLQDNVLLNRSIIDN 96 (241)
T ss_dssp EEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEETTTSCHHHHHHHEEEECSSCCCTTSBHHHH
T ss_pred ceEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhcCCCCCCEEEECCEEecccchhhhhceEEEEecccccCCcccccc
Confidence 34555555555555566779999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCC-CCHHHHHHHHHHcCCChHHHhhcCCcccc------------------ccccccCCCEEEEecCCcCCCHHHHH
Q 037346 1028 LDPLEE-HADEQIWEALDKCQLGDEVRKKKGKLDSQ------------------GRVLLKKSKVLVLDEATASVDTATDN 1088 (1156)
Q Consensus 1028 l~~~~~-~~deei~~al~~~~l~~~i~~lp~gl~s~------------------ARALLr~~~ILiLDEaTS~LD~~te~ 1088 (1156)
|.++.+ .++++++++++.+++.+++..+|.|+++. ||||+++|+|||||||||+||+.|++
T Consensus 97 i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~t~i~~~g~~LSGGq~QRvalARal~~~p~ililDEpts~LD~~~~~ 176 (241)
T d2pmka1 97 ISLANPGMSVEKVIYAAKLAGAHDFISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEH 176 (241)
T ss_dssp HCTTSTTCCHHHHHHHHHHHTCHHHHTTSTTGGGSBCSTTTTCCCHHHHHHHHHHHHHTTCCSEEEECCCCSCCCHHHHH
T ss_pred ccccCccccHHHHHHHHHHHhhHHHHHhhhcchhhhcCCCCCccCHHHHHHHhhhhhhhcccchhhhhCCccccCHHHHH
Confidence 998764 67899999999999999999999998864 89999999999999999999999999
Q ss_pred HHHHHHHHhcCCceEEEeecCcccccccCEEEEEeCcEEeeecChhHHhcCCCChHHHHHHHHh
Q 037346 1089 QIQQTLRQHFSDCTVVTIAHRITSVLDSAMVLLLNHGLIKEYDSPTKLLENKSSSFAQLVAEYT 1152 (1156)
Q Consensus 1089 ~I~~~l~~~~~~~TvI~IaHrl~ti~~~D~I~Vl~~G~IvE~G~~~eLl~~~~g~f~~l~~~~~ 1152 (1156)
.|.+.|++..+++|+|+||||++++..||||+||++|+|+|+|+|+||++++++.|++|++.+.
T Consensus 177 ~i~~~l~~l~~~~Tvi~itH~l~~~~~~D~i~vl~~G~Iv~~G~~~ell~~~~~~y~~l~~~Q~ 240 (241)
T d2pmka1 177 VIMRNMHKICKGRTVIIIAHRLSTVKNADRIIVMEKGKIVEQGKHKELLSEPESLYSYLYQLQS 240 (241)
T ss_dssp HHHHHHHHHHTTSEEEEECSSGGGGTTSSEEEEEETTEEEEEECHHHHHHSTTCHHHHHHHHHC
T ss_pred HHHHHHHHHhCCCEEEEEECCHHHHHhCCEEEEEECCEEEEECCHHHHHhCCCCHHHHHHHHhc
Confidence 9999999999999999999999999999999999999999999999999988899999998654
|
| >d2hyda1 c.37.1.12 (A:324-578) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative multidrug export ATP-binding/permease protein SAV1866 species: Staphylococcus aureus [TaxId: 1280]
Probab=100.00 E-value=2.9e-52 Score=449.73 Aligned_cols=207 Identities=28% Similarity=0.465 Sum_probs=194.1
Q ss_pred CCCeEEEEEEEEEEcCCCCc---------------eeeCCCCCCHHHHHHHHhhcccCCCceEEEcCeeCCCCChHHHhh
Q 037346 944 SHGEVNIRHLQVRYAPNLPL---------------VLRGRTGSGKSTLIQTLFRIVESTAGHILIDGKDISLIGLHDLRT 1008 (1156)
Q Consensus 944 ~~g~I~~~~Vsf~Y~~~~~~---------------vL~G~SGsGKSTL~~lL~rl~~p~~G~I~idG~di~~i~~~~LR~ 1008 (1156)
.+|.|+|+||+|+|+++.++ +|.|+||||||||+++|+|+++|++|+|.+||.|+++++.+++|+
T Consensus 13 ~~g~I~~~nvsf~Y~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~gl~~p~~G~I~i~g~~i~~~~~~~lr~ 92 (255)
T d2hyda1 13 KQGRIDIDHVSFQYNDNEAPILKDINLSIEKGETVAFVGMSGGGKSTLINLIPRFYDVTSGQILIDGHNIKDFLTGSLRN 92 (255)
T ss_dssp CSCCEEEEEEEECSCSSSCCSEEEEEEEECTTCEEEEECSTTSSHHHHHTTTTTSSCCSEEEEEETTEEGGGSCHHHHHH
T ss_pred CCCEEEEEEEEEEeCCCCCcceeceEEEEcCCCEEEEECCCCCcHHHHHHHHHhcCCccccccccCCEEcccCCHHHhhh
Confidence 46889999999999765443 455999999999999999999999999999999999999999999
Q ss_pred cCeeeccccccccccchhccCCCCC-CCHHHHHHHHHHcCCChHHHhhcCCcccc------------------ccccccC
Q 037346 1009 RLSIIPQDPTMFEGTTRSNLDPLEE-HADEQIWEALDKCQLGDEVRKKKGKLDSQ------------------GRVLLKK 1069 (1156)
Q Consensus 1009 ~i~~VpQdp~LF~gTIr~Nl~~~~~-~~deei~~al~~~~l~~~i~~lp~gl~s~------------------ARALLr~ 1069 (1156)
+|+||||+|.+|++||||||.++.+ .+++++++|++.+++++++..+|+|+++. ||||+++
T Consensus 93 ~i~~v~Q~~~lf~~Ti~eNi~~g~~~~~~~~~~~al~~~~l~~~i~~lp~gl~t~i~~~g~~LSgGq~QRi~iARal~~~ 172 (255)
T d2hyda1 93 QIGLVQQDNILFSDTVKENILLGRPTATDEEVVEAAKMANAHDFIMNLPQGYDTEVGERGVKLSGGQKQRLSIARIFLNN 172 (255)
T ss_dssp TEEEECSSCCCCSSBHHHHHGGGCSSCCHHHHHHHHHHTTCHHHHHTSTTGGGCBCCGGGTTSCHHHHHHHHHHHHHHHC
T ss_pred eeeeeeccccCCCCCHHHHHhccCcCCCHHHHHHHHHHhCCHHHHHhccccccchhcCCCCCcCHHHHHHHHHHHHHhcC
Confidence 9999999999999999999987654 57999999999999999999999999864 8999999
Q ss_pred CCEEEEecCCcCCCHHHHHHHHHHHHHhcCCceEEEeecCcccccccCEEEEEeCcEEeeecChhHHhcCCCChHHHHHH
Q 037346 1070 SKVLVLDEATASVDTATDNQIQQTLRQHFSDCTVVTIAHRITSVLDSAMVLLLNHGLIKEYDSPTKLLENKSSSFAQLVA 1149 (1156)
Q Consensus 1070 ~~ILiLDEaTS~LD~~te~~I~~~l~~~~~~~TvI~IaHrl~ti~~~D~I~Vl~~G~IvE~G~~~eLl~~~~g~f~~l~~ 1149 (1156)
|+|||||||||+||++|++.|.+.|++..+++|+|+||||++++..||||+||++|+|+|.|+|+||+++ ++.|++||+
T Consensus 173 p~ililDEpts~LD~~t~~~i~~~l~~l~~~~TvI~itH~~~~~~~~D~ii~l~~G~iv~~G~~~eLl~~-~~~y~~l~~ 251 (255)
T d2hyda1 173 PPILILDEATSALDLESESIIQEALDVLSKDRTTLIVAHRLSTITHADKIVVIENGHIVETGTHRELIAK-QGAYEHLYS 251 (255)
T ss_dssp CSEEEEESTTTTCCHHHHHHHHHHHHHHTTTSEEEEECSSGGGTTTCSEEEEEETTEEEEEECHHHHHHT-TSHHHHHHT
T ss_pred CCEEEEeCccccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhCCEEEEEECCEEEEECCHHHHHhC-CcHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999999985 799999997
Q ss_pred HH
Q 037346 1150 EY 1151 (1156)
Q Consensus 1150 ~~ 1151 (1156)
.+
T Consensus 252 ~Q 253 (255)
T d2hyda1 252 IQ 253 (255)
T ss_dssp TT
T ss_pred Hc
Confidence 65
|
| >d1r0wa_ c.37.1.12 (A:) Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain species: Mouse (Mus musculus) [TaxId: 10090]
Probab=100.00 E-value=1.1e-51 Score=453.35 Aligned_cols=216 Identities=38% Similarity=0.674 Sum_probs=199.2
Q ss_pred cEEEeeeEEEeCCCCCCCccccceEEeeCCeEEEEEcCCCCChHHHHHHHhCCCCCCCcEEEEcCeEEEEecCCcCCCcc
Q 037346 357 AIEIIDGSFSWDFSSPNPTLRNINLKVFHGMRVAVCGTVGSGKSSCLSCILGGVPKESGIIRLCGTKAYVAQSPWIQSGK 436 (1156)
Q Consensus 357 ~i~~~~~~f~~~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKSTll~~i~g~~~~~~G~i~~~g~~~~v~Q~~~~~~~t 436 (1156)
.|.|+|++|. ++|+|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|+++|+||+||+|++|
T Consensus 38 ~i~~~~~~~~-----g~pvL~~isl~i~~Ge~vaivG~nGsGKSTLl~~i~Gl~~p~~G~I~~~g~i~~v~Q~~~l~~~t 112 (281)
T d1r0wa_ 38 NVSFSHLCLV-----GNPVLKNINLNIEKGEMLAITGSTGSGKTSLLMLILGELEASEGIIKHSGRVSFCSQFSWIMPGT 112 (281)
T ss_dssp --CHHHHHHT-----TCEEEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTSSCCSEEEEECCSCEEEECSSCCCCSEE
T ss_pred cEEEEEcCCC-----CCeEEeCeEEEEcCCCEEEEECCCCChHHHHHHHHhCCCcCCCcEEEECCEEEEEeccccccCce
Confidence 4555555432 45899999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhcCCCCCHHHHHHHHHHhCCchhhhhCCCCCccccccCCCCCCHHHHHHHHHHHhhccCCCeeeeeCCCCCcCHH
Q 037346 437 IEENILFGKEMDRERYERVLEACSLKKDLEVLPFGDQTIIGERGINLSGGQKQRIQIARPLYQDADIFLLDDPFSPVDDH 516 (1156)
Q Consensus 437 i~eni~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~t~v~~~g~~LSgGqkqRi~lAral~~~~~illlDep~s~lD~~ 516 (1156)
|+|||.|+...++.+++++++.|.+..++..+|++++|.+|++|.+|||||||||+|||||+++|+|||||||||+||+.
T Consensus 113 v~eni~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~LSgGqkQRv~lARaL~~~p~illLDEPts~LD~~ 192 (281)
T d1r0wa_ 113 IKENIIFGVSYDEYRYKSVVKACQLQQDITKFAEQDNTVLGEGGVTLSGGQRARISLARAVYKDADLYLLDSPFGYLDVF 192 (281)
T ss_dssp HHHHHTTTSCCCHHHHHHHHHHTTCHHHHTTSTTGGGCEECTTCTTSCHHHHHHHHHHHHHHSCCSEEEEESCCCSSCHH
T ss_pred eeccccccccccchHHHHHHHHHHhHHHHHhchhhhhhhhhhhccCCCHHHHHHHHHHHHHHhCccchhhcCccccCCHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHh--cCCCEEEEEccCCCccccCCEEEEEeCCeEEEccChHHHHhcCcchHHHH
Q 037346 517 TGAHLFKFCWV--SSSKTVIYATHQVEFLPAADLILVIKDGKITQAGKYSDILNSGTDFMELV 577 (1156)
Q Consensus 517 ~~~~i~~~~~~--~~~~tvi~vtH~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~~~~~~~~~ 577 (1156)
+++.+++.++. .+++|+|+|||+++.++.||+|++|++|+|++.|+++|+++....|...+
T Consensus 193 ~~~~i~~~~~~~~~~~~tvi~itH~~~~l~~aDrI~vl~~G~i~~~Gt~~eL~~~~~~~~~~~ 255 (281)
T d1r0wa_ 193 TEEQVFESCVCKLMANKTRILVTSKMEHLRKADKILILHQGSSYFYGTFSELQSLRPDFSSKL 255 (281)
T ss_dssp HHHHHHHHCCCCCTTTSEEEEECSCHHHHHTCSEEEEEETTEEEEEECHHHHHHHCHHHHHHH
T ss_pred HHHHHHHHHHHHhhCCCEEEEEechHHHHHhCCEEEEEECCEEEEECCHHHHhccCcHHHHHH
Confidence 99999887544 46899999999999998999999999999999999999987766665543
|
| >d3b60a1 c.37.1.12 (A:329-581) Multidrug resistance ABC transporter MsbA, C-terminal domain {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Multidrug resistance ABC transporter MsbA, C-terminal domain species: Salmonella typhimurium [TaxId: 90371]
Probab=100.00 E-value=5.7e-51 Score=440.74 Aligned_cols=206 Identities=32% Similarity=0.497 Sum_probs=192.8
Q ss_pred CCeEEEEEEEEEEcCCCC---------------ceeeCCCCCCHHHHHHHHhhcccCCCceEEEcCeeCCCCChHHHhhc
Q 037346 945 HGEVNIRHLQVRYAPNLP---------------LVLRGRTGSGKSTLIQTLFRIVESTAGHILIDGKDISLIGLHDLRTR 1009 (1156)
Q Consensus 945 ~g~I~~~~Vsf~Y~~~~~---------------~vL~G~SGsGKSTL~~lL~rl~~p~~G~I~idG~di~~i~~~~LR~~ 1009 (1156)
.|.|+|+||+|+|+.... ++|+||||||||||+++|+|+++|++|+|++||+|+++++.+++|++
T Consensus 11 ~g~I~~~nvsf~Y~~~~~~~L~~isl~i~~Ge~iaivG~sGsGKSTLl~ll~gl~~p~~G~I~i~g~~i~~~~~~~~r~~ 90 (253)
T d3b60a1 11 TGDLEFRNVTFTYPGREVPALRNINLKIPAGKTVALVGRSGSGKSTIASLITRFYDIDEGHILMDGHDLREYTLASLRNQ 90 (253)
T ss_dssp CCCEEEEEEEECSSSSSCCSEEEEEEEECTTCEEEEEECTTSSHHHHHHHHTTTTCCSEEEEEETTEETTTBCHHHHHHT
T ss_pred ceEEEEEEEEEEeCCCCCceeeceEEEEcCCCEEEEECCCCChHHHHHHHHhcccCCCccEEEECCcccchhhhhhhhhe
Confidence 578999999999965443 34569999999999999999999999999999999999999999999
Q ss_pred CeeeccccccccccchhccCCCC--CCCHHHHHHHHHHcCCChHHHhhcCCcccc------------------ccccccC
Q 037346 1010 LSIIPQDPTMFEGTTRSNLDPLE--EHADEQIWEALDKCQLGDEVRKKKGKLDSQ------------------GRVLLKK 1069 (1156)
Q Consensus 1010 i~~VpQdp~LF~gTIr~Nl~~~~--~~~deei~~al~~~~l~~~i~~lp~gl~s~------------------ARALLr~ 1069 (1156)
|++|||+|.+|++|+++|+.++. ..+++++++|++.+++++++..+|+|+++. ||||+++
T Consensus 91 i~~v~Q~~~l~~~ti~~n~~~~~~~~~~~~~i~~a~~~~~l~~~i~~l~~gl~t~~~~~~~~LSGGqkQRvaiARal~~~ 170 (253)
T d3b60a1 91 VALVSQNVHLFNDTVANNIAYARTEEYSREQIEEAARMAYAMDFINKMDNGLDTIIGENGVLLSGGQRQRIAIARALLRD 170 (253)
T ss_dssp EEEECSSCCCCSSBHHHHHHTTTTSCCCHHHHHHHHHTTTCHHHHHHSTTGGGSBCCTTSCSSCHHHHHHHHHHHHHHHC
T ss_pred EEEEeeccccCCcchhhhhhhcCcccCCHHHHHHHHHHHhHHHHHHhccccchhhhcCCCCCcCHHHHHHHHHHHHHhcC
Confidence 99999999999999999987653 567999999999999999999999999864 8999999
Q ss_pred CCEEEEecCCcCCCHHHHHHHHHHHHHhcCCceEEEeecCcccccccCEEEEEeCcEEeeecChhHHhcCCCChHHHHHH
Q 037346 1070 SKVLVLDEATASVDTATDNQIQQTLRQHFSDCTVVTIAHRITSVLDSAMVLLLNHGLIKEYDSPTKLLENKSSSFAQLVA 1149 (1156)
Q Consensus 1070 ~~ILiLDEaTS~LD~~te~~I~~~l~~~~~~~TvI~IaHrl~ti~~~D~I~Vl~~G~IvE~G~~~eLl~~~~g~f~~l~~ 1149 (1156)
|+|||||||||+||++|++.|++.|+++.+++|+|+||||++++..||||+||++|+|+|.|+|+||+++ +|.|++||+
T Consensus 171 p~ililDEpts~LD~~~~~~i~~~l~~l~~~~Tvi~itH~l~~~~~~D~v~vl~~G~Iv~~G~~~eLl~~-~~~y~~l~~ 249 (253)
T d3b60a1 171 SPILILDEATSALDTESERAIQAALDELQKNRTSLVIAHRLSTIEQADEIVVVEDGIIVERGTHSELLAQ-HGVYAQLHK 249 (253)
T ss_dssp CSEEEEETTTSSCCHHHHHHHHHHHHHHHTTSEEEEECSCGGGTTTCSEEEEEETTEEEEEECHHHHHHH-TSSHHHHHH
T ss_pred CCEEEeccccccCCHHHHHHHHHHHHHhccCCEEEEEECCHHHHHhCCEEEEEECCEEEEECCHHHHHhC-CcHHHHHHH
Confidence 9999999999999999999999999999899999999999999999999999999999999999999986 799999998
Q ss_pred HH
Q 037346 1150 EY 1151 (1156)
Q Consensus 1150 ~~ 1151 (1156)
.|
T Consensus 250 ~Q 251 (253)
T d3b60a1 250 MQ 251 (253)
T ss_dssp HT
T ss_pred Hc
Confidence 65
|
| >d1jj7a_ c.37.1.12 (A:) Peptide transporter Tap1, C-terminal ABC domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Peptide transporter Tap1, C-terminal ABC domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=7.5e-50 Score=431.46 Aligned_cols=205 Identities=25% Similarity=0.379 Sum_probs=188.1
Q ss_pred CCCeEEEEEEEEEEcCC----------------CCceeeCCCCCCHHHHHHHHhhcccCCCceEEEcCeeCCCCChHHHh
Q 037346 944 SHGEVNIRHLQVRYAPN----------------LPLVLRGRTGSGKSTLIQTLFRIVESTAGHILIDGKDISLIGLHDLR 1007 (1156)
Q Consensus 944 ~~g~I~~~~Vsf~Y~~~----------------~~~vL~G~SGsGKSTL~~lL~rl~~p~~G~I~idG~di~~i~~~~LR 1007 (1156)
.+|.|+|+||+|+|+.. +.++|.||||||||||+++|+|+|+|++|+|+|||+|+++++.+.+|
T Consensus 8 ~~g~I~~~nvsf~Y~~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~li~gl~~p~~G~I~i~g~~i~~~~~~~~r 87 (251)
T d1jj7a_ 8 LEGLVQFQDVSFAYPNRPDVLVLQGLTFTLRPGEVTALVGPNGSGKSTVAALLQNLYQPTGGQLLLDGKPLPQYEHRYLH 87 (251)
T ss_dssp CCCCEEEEEEEECCTTSTTCCSEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEEGGGBCHHHHH
T ss_pred ccceEEEEEEEEECCCCCCCEeEeceEEEEcCCCEEEEECCCCCcHHHHHHHHhcccCCCcCEEEECCEecchhhhHHHH
Confidence 46789999999999532 22345699999999999999999999999999999999999999999
Q ss_pred hcCeeeccccccccccchhccCCC--CCCCHHHHHHHHHHcCCChHHHhhcCCcccc------------------ccccc
Q 037346 1008 TRLSIIPQDPTMFEGTTRSNLDPL--EEHADEQIWEALDKCQLGDEVRKKKGKLDSQ------------------GRVLL 1067 (1156)
Q Consensus 1008 ~~i~~VpQdp~LF~gTIr~Nl~~~--~~~~deei~~al~~~~l~~~i~~lp~gl~s~------------------ARALL 1067 (1156)
++|++|||+|.+|++||++|+.++ ....+++++++++++++++++..+|.|+++. ||||+
T Consensus 88 ~~i~~v~Q~~~lf~~tv~eni~~g~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~~~i~~~~~~LSGGqkQRvaiARal~ 167 (251)
T d1jj7a_ 88 RQVAAVGQEPQVFGRSLQENIAYGLTQKPTMEEITAAAVKSGAHSFISGLPQGYDTEVDEAGSQLSGGQRQAVALARALI 167 (251)
T ss_dssp HHEEEECSSCCCCSSBHHHHHHCSCSSCCCHHHHHHHHHHHTCHHHHHTSTTGGGCBCCSSCSSSCHHHHHHHHHHHHHT
T ss_pred HHhhhccccccccCcchhhhhhhhhcccchHHHHHHHHHHHHHHHHHHhccccchhhHhccCccCChhHceEEEEeeccc
Confidence 999999999999999999999875 2456889999999999999999999998864 89999
Q ss_pred cCCCEEEEecCCcCCCHHHHHHHHHHHHHhcC--CceEEEeecCcccccccCEEEEEeCcEEeeecChhHHhcCCCChHH
Q 037346 1068 KKSKVLVLDEATASVDTATDNQIQQTLRQHFS--DCTVVTIAHRITSVLDSAMVLLLNHGLIKEYDSPTKLLENKSSSFA 1145 (1156)
Q Consensus 1068 r~~~ILiLDEaTS~LD~~te~~I~~~l~~~~~--~~TvI~IaHrl~ti~~~D~I~Vl~~G~IvE~G~~~eLl~~~~g~f~ 1145 (1156)
++|+|||||||||+||+.|+..|++.|++..+ ++|+|+||||++++..||||+||++|+|+|.|+|+||+++ +|.|+
T Consensus 168 ~~p~ililDEpTs~LD~~~~~~i~~~l~~l~~~~~~Tvi~itH~l~~~~~aDrI~vl~~G~iv~~Gt~~eLl~~-~~~y~ 246 (251)
T d1jj7a_ 168 RKPCVLILDDATSALDANSQLQVEQLLYESPERYSRSVLLITQHLSLVEQADHILFLEGGAIREGGTHQQLMEK-KGCYW 246 (251)
T ss_dssp TCCSEEEEESTTTTCCHHHHHHHHHHHHTCGGGGGCEEEEECSCHHHHHTCSEEEEEETTEEEEEECHHHHHHH-TSHHH
T ss_pred cCCcEEEecCcCcccChhhHHHHHHHHHHHhhhcCCEEEEEeCCHHHHHhCCEEEEEECCEEEEECCHHHHHhC-CcHHH
Confidence 99999999999999999999999999988654 7899999999999999999999999999999999999986 69999
Q ss_pred HHHH
Q 037346 1146 QLVA 1149 (1156)
Q Consensus 1146 ~l~~ 1149 (1156)
+||+
T Consensus 247 ~l~~ 250 (251)
T d1jj7a_ 247 AMVQ 250 (251)
T ss_dssp HHHC
T ss_pred HHhc
Confidence 9985
|
| >d1mv5a_ c.37.1.12 (A:) Multidrug resistance ABC transporter LmrA, C-terminal domain {Lactococcus lactis [TaxId: 1358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Multidrug resistance ABC transporter LmrA, C-terminal domain species: Lactococcus lactis [TaxId: 1358]
Probab=100.00 E-value=1.8e-50 Score=433.88 Aligned_cols=202 Identities=31% Similarity=0.534 Sum_probs=188.3
Q ss_pred EEEEEEEEEcCCCCceeeCCCCCCHHHHHHHHhhcccCCCceEEEcCeeCCCCChHHHhhcCeeeccccccccccchhcc
Q 037346 949 NIRHLQVRYAPNLPLVLRGRTGSGKSTLIQTLFRIVESTAGHILIDGKDISLIGLHDLRTRLSIIPQDPTMFEGTTRSNL 1028 (1156)
Q Consensus 949 ~~~~Vsf~Y~~~~~~vL~G~SGsGKSTL~~lL~rl~~p~~G~I~idG~di~~i~~~~LR~~i~~VpQdp~LF~gTIr~Nl 1028 (1156)
.++||||..++++.++|.||||||||||+++|+|+++|++|+|.+||.|+++++.+.+|++|+||||||.+|++||+||+
T Consensus 17 vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~ti~eNi 96 (242)
T d1mv5a_ 17 ILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQPTAGEITIDGQPIDNISLENWRSQIGFVSQDSAIMAGTIRENL 96 (242)
T ss_dssp SEEEEEEEECTTEEEEEECCTTSSHHHHHHHHTTSSCCSBSCEEETTEESTTTSCSCCTTTCCEECCSSCCCCEEHHHHT
T ss_pred eeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHHhhCCCCCEEEECCEEeccccHHHHHhheEEEccccccCCcchhhhe
Confidence 36666666677777788899999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCC--CCCCHHHHHHHHHHcCCChHHHhhcCCcccc------------------ccccccCCCEEEEecCCcCCCHHHHH
Q 037346 1029 DPL--EEHADEQIWEALDKCQLGDEVRKKKGKLDSQ------------------GRVLLKKSKVLVLDEATASVDTATDN 1088 (1156)
Q Consensus 1029 ~~~--~~~~deei~~al~~~~l~~~i~~lp~gl~s~------------------ARALLr~~~ILiLDEaTS~LD~~te~ 1088 (1156)
.++ ...++++++++++.+++.+++..+|+++++. ||||+++|+|||||||||+||+++++
T Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~LSGGqkQRv~iARal~~~p~ililDEpts~LD~~~~~ 176 (242)
T d1mv5a_ 97 TYGLEGDYTDEDLWQVLDLAFARSFVENMPDQLNTEVGERGVKISGGQRQRLAIARAFLRNPKILMLDEATASLDSESES 176 (242)
T ss_dssp TSCTTSCSCHHHHHHHHHHHTCTTTTTSSTTGGGCEESTTSBCCCHHHHHHHHHHHHHHHCCSEEEEECCSCSSCSSSCC
T ss_pred ecccccccchhhHHHHHHHHHhhhhhccCcccccccccCCCCCCCHHHHHHHHHHHHHhcCCCEEEecCCccccCHHHHH
Confidence 765 3467899999999999999999999988753 89999999999999999999999999
Q ss_pred HHHHHHHHhcCCceEEEeecCcccccccCEEEEEeCcEEeeecChhHHhcCCCChHHHHHHHH
Q 037346 1089 QIQQTLRQHFSDCTVVTIAHRITSVLDSAMVLLLNHGLIKEYDSPTKLLENKSSSFAQLVAEY 1151 (1156)
Q Consensus 1089 ~I~~~l~~~~~~~TvI~IaHrl~ti~~~D~I~Vl~~G~IvE~G~~~eLl~~~~g~f~~l~~~~ 1151 (1156)
.|++.|++..+++|+|+||||++++..||||+||++|+|+|.|+|+||+++ ++.|++|++++
T Consensus 177 ~i~~~l~~l~~~~Tvi~itH~l~~~~~~D~i~vl~~G~iv~~G~~~eLl~~-~~~y~~l~~~Q 238 (242)
T d1mv5a_ 177 MVQKALDSLMKGRTTLVIAHRLSTIVDADKIYFIEKGQITGSGKHNELVAT-HPLYAKYVSEQ 238 (242)
T ss_dssp HHHHHHHHHHTTSEEEEECCSHHHHHHCSEEEEEETTEECCCSCHHHHHHH-CHHHHHHHHCC
T ss_pred HHHHHHHHHcCCCEEEEEECCHHHHHhCCEEEEEECCEEEEECCHHHHHhC-ChHHHHHHHHH
Confidence 999999999899999999999999999999999999999999999999985 78999999864
|
| >d2awna2 c.37.1.12 (A:4-235) Maltose transport protein MalK, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Maltose transport protein MalK, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=2.9e-47 Score=402.45 Aligned_cols=199 Identities=29% Similarity=0.402 Sum_probs=149.1
Q ss_pred EEEeeeEEEeCCCCCCCccccceEEeeCCeEEEEEcCCCCChHHHHHHHhCCCCCCCcEEEEcCe-----------EEEE
Q 037346 358 IEIIDGSFSWDFSSPNPTLRNINLKVFHGMRVAVCGTVGSGKSSCLSCILGGVPKESGIIRLCGT-----------KAYV 426 (1156)
Q Consensus 358 i~~~~~~f~~~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKSTll~~i~g~~~~~~G~i~~~g~-----------~~~v 426 (1156)
|+++|++++|+ +..+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+ +|||
T Consensus 1 Iev~nv~k~yg---~~~~l~~isl~i~~Gei~~liGpsGsGKSTLl~~i~Gl~~p~sG~I~i~g~~i~~~~~~~r~ig~v 77 (232)
T d2awna2 1 VQLQNVTKAWG---EVVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETITSGDLFIGEKRMNDTPPAERGVGMV 77 (232)
T ss_dssp EEEEEEEEEET---TEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEESSSCCTTSCGGGTCEEEE
T ss_pred CEEEEEEEEEC---CEEEEeeeEEEEcCCCEEEEECCCCChHHHHHHHHhcCCCCCCCEEEECCEECCCCchhhceeeee
Confidence 68999999996 467999999999999999999999999999999999999999999999983 7999
Q ss_pred ecCCcCCC-ccHHHHhhcCCCC-------CHHHHHHHHHHhCCchhhhhCCCCCccccccCCCCCCHHHHHHHHHHHhhc
Q 037346 427 AQSPWIQS-GKIEENILFGKEM-------DRERYERVLEACSLKKDLEVLPFGDQTIIGERGINLSGGQKQRIQIARPLY 498 (1156)
Q Consensus 427 ~Q~~~~~~-~ti~eni~~~~~~-------~~~~~~~~~~~~~l~~~~~~~~~g~~t~v~~~g~~LSgGqkqRi~lAral~ 498 (1156)
||+|.++. .||+||+.|+... .+++..++++.++|.+..+. ...+|||||||||+|||||+
T Consensus 78 ~Q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~l~~~~~~-----------~~~~LSGGqkQRvaiAraL~ 146 (232)
T d2awna2 78 FQSYALYPHLSVAENMSFGLKLAGAKKEVINQRVNQVAEVLQLAHLLDR-----------KPKALSGGQRQRVAIGRTLV 146 (232)
T ss_dssp CSSCCC---------------------CHHHHHHHHHHHHC--------------------------------CHHHHHH
T ss_pred ccccccccchhHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCCChhhhhC-----------ChhhCCHHHHHHHHHHHHHh
Confidence 99998875 4999999987542 13567788888888765544 34689999999999999999
Q ss_pred cCCCeeeeeCCCCCcCHHHHHHHHHHHHh---cCCCEEEEEccCCCcccc-CCEEEEEeCCeEEEccChHHHHhcC
Q 037346 499 QDADIFLLDDPFSPVDDHTGAHLFKFCWV---SSSKTVIYATHQVEFLPA-ADLILVIKDGKITQAGKYSDILNSG 570 (1156)
Q Consensus 499 ~~~~illlDep~s~lD~~~~~~i~~~~~~---~~~~tvi~vtH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~~~~ 570 (1156)
.+|+++||||||++||+.++.++++.+.. ..|+|+|+|||+++.+.. ||||++|++|+|++.|++++++++.
T Consensus 147 ~~P~illlDEPts~LD~~~~~~i~~~l~~l~~~~g~tii~vTHd~~~a~~~~dri~vm~~G~iv~~G~~~el~~~P 222 (232)
T d2awna2 147 AEPSVFLLDEPLSNLDAALRVQMRIEISRLHKRLGRTMIYVTHDQVEAMTLADKIVVLDAGRVAQVGKPLELYHYP 222 (232)
T ss_dssp TCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHSCCEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHHHSC
T ss_pred cCCCEEEEcCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEeCHHHHHhCC
Confidence 99999999999999999999999876643 469999999999998765 9999999999999999999998653
|
| >d1v43a3 c.37.1.12 (A:7-245) Hypothetical protein PH0022, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Hypothetical protein PH0022, N-terminal domain species: Pyrococcus horikoshii [TaxId: 53953]
Probab=100.00 E-value=6.7e-47 Score=400.82 Aligned_cols=200 Identities=24% Similarity=0.313 Sum_probs=173.0
Q ss_pred cEEEeeeEEEeCCCCCCCccccceEEeeCCeEEEEEcCCCCChHHHHHHHhCCCCCCCcEEEEcCe-----------EEE
Q 037346 357 AIEIIDGSFSWDFSSPNPTLRNINLKVFHGMRVAVCGTVGSGKSSCLSCILGGVPKESGIIRLCGT-----------KAY 425 (1156)
Q Consensus 357 ~i~~~~~~f~~~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKSTll~~i~g~~~~~~G~i~~~g~-----------~~~ 425 (1156)
.|+++|++++|+ +..+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+ +||
T Consensus 6 ~I~v~nlsk~yg---~~~al~~vsl~v~~Ge~~~liGpsGaGKSTLl~~i~Gl~~p~sG~I~i~g~~i~~~~~~~r~ig~ 82 (239)
T d1v43a3 6 EVKLENLTKRFG---NFTAVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPTEGRIYFGDRDVTYLPPKDRNISM 82 (239)
T ss_dssp CEEEEEEEEEET---TEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCGGGGTEEE
T ss_pred eEEEEEEEEEEC---CEEEEcceeEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCCCEEEEcceecccCCcccceEEE
Confidence 599999999996 568999999999999999999999999999999999999999999999994 799
Q ss_pred EecCCcCCC-ccHHHHhhcCCC---CC----HHHHHHHHHHhCCchhhhhCCCCCccccccCCCCCCHHHHHHHHHHHhh
Q 037346 426 VAQSPWIQS-GKIEENILFGKE---MD----RERYERVLEACSLKKDLEVLPFGDQTIIGERGINLSGGQKQRIQIARPL 497 (1156)
Q Consensus 426 v~Q~~~~~~-~ti~eni~~~~~---~~----~~~~~~~~~~~~l~~~~~~~~~g~~t~v~~~g~~LSgGqkqRi~lAral 497 (1156)
|||+|.+|. .||+||+.|+.. .+ +++.+++++.++|++..+ +...+|||||||||+|||||
T Consensus 83 v~Q~~~l~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-----------~~~~~LSGGq~QRvaiAraL 151 (239)
T d1v43a3 83 VFQSYAVWPHMTVYENIAFPLKIKKFPKDEIDKRVRWAAELLQIEELLN-----------RYPAQLSGGQRQRVAVARAI 151 (239)
T ss_dssp EEC------CCCHHHHHHTTCC--CCCHHHHHHHHHHHHHHTTCGGGTT-----------SCTTTCCSSCHHHHHHHHHH
T ss_pred EeechhhcccchHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhhc-----------CChhhCCHHHHHHHHHHhhh
Confidence 999999885 599999999753 33 345667888888876554 44578999999999999999
Q ss_pred ccCCCeeeeeCCCCCcCHHHHHHHHHHHHh---cCCCEEEEEccCCCccc-cCCEEEEEeCCeEEEccChHHHHhcC
Q 037346 498 YQDADIFLLDDPFSPVDDHTGAHLFKFCWV---SSSKTVIYATHQVEFLP-AADLILVIKDGKITQAGKYSDILNSG 570 (1156)
Q Consensus 498 ~~~~~illlDep~s~lD~~~~~~i~~~~~~---~~~~tvi~vtH~~~~~~-~~d~i~~l~~G~i~~~g~~~~l~~~~ 570 (1156)
+.+|+|+||||||++||+.++..+.+.+.. ..|+|+|+|||+++.+. .||||++|++|+|+++|+++++.++.
T Consensus 152 ~~~P~iLllDEPts~LD~~~~~~i~~ll~~l~~~~g~tii~vTHd~~~a~~~~dri~vm~~G~iv~~G~~~el~~~P 228 (239)
T d1v43a3 152 VVEPDVLLMDEPLSNLDAKLRVAMRAEIKKLQQKLKVTTIYVTHDQVEAMTMGDRIAVMNRGQLLQIGSPTEVYLRP 228 (239)
T ss_dssp TTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHHHCC
T ss_pred ccCCCceeecCCcccCCHHHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhCC
Confidence 999999999999999999999999886644 34899999999999986 59999999999999999999998653
|
| >d3d31a2 c.37.1.12 (A:1-229) Sulfate/molybdate ABC transporter, ATP-binding protein {Methanosarcina acetivorans [TaxId: 2214]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Sulfate/molybdate ABC transporter, ATP-binding protein species: Methanosarcina acetivorans [TaxId: 2214]
Probab=100.00 E-value=9.5e-47 Score=397.06 Aligned_cols=197 Identities=33% Similarity=0.435 Sum_probs=176.7
Q ss_pred EEEeeeEEEeCCCCCCCccccceEEeeCCeEEEEEcCCCCChHHHHHHHhCCCCCCCcEEEEcCe-----------EEEE
Q 037346 358 IEIIDGSFSWDFSSPNPTLRNINLKVFHGMRVAVCGTVGSGKSSCLSCILGGVPKESGIIRLCGT-----------KAYV 426 (1156)
Q Consensus 358 i~~~~~~f~~~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKSTll~~i~g~~~~~~G~i~~~g~-----------~~~v 426 (1156)
|+++|++++|+ + .+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|. +|||
T Consensus 2 i~v~nlsk~y~---~-~aL~~vs~~i~~Ge~~~liGpsGaGKSTll~~l~Gl~~p~sG~I~~~G~~i~~~~~~~r~ig~v 77 (229)
T d3d31a2 2 IEIESLSRKWK---N-FSLDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHVPDSGRILLDGKDVTDLSPEKHDIAFV 77 (229)
T ss_dssp EEEEEEEEECS---S-CEEEEEEEEECTTCEEEEECCCTHHHHHHHHHHHTSSCCSEEEEEETTEECTTSCHHHHTCEEE
T ss_pred EEEEEEEEEeC---C-EEEeeeEEEECCCCEEEEECCCCCcHHHHHHHHhcCcCCCCCEEEEccEeccccchhHhcceee
Confidence 78999999995 2 5899999999999999999999999999999999999999999999994 6999
Q ss_pred ecCCcCCC-ccHHHHhhcCC----CCCHHHHHHHHHHhCCchhhhhCCCCCccccccCCCCCCHHHHHHHHHHHhhccCC
Q 037346 427 AQSPWIQS-GKIEENILFGK----EMDRERYERVLEACSLKKDLEVLPFGDQTIIGERGINLSGGQKQRIQIARPLYQDA 501 (1156)
Q Consensus 427 ~Q~~~~~~-~ti~eni~~~~----~~~~~~~~~~~~~~~l~~~~~~~~~g~~t~v~~~g~~LSgGqkqRi~lAral~~~~ 501 (1156)
+|+|.+|. .||+||+.|+. ..++++..++++.+++.+..+ +.+.+|||||||||+|||||+.+|
T Consensus 78 ~Q~~~l~~~~tV~enl~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-----------~~~~~LSGG~~QRvaiAraL~~~P 146 (229)
T d3d31a2 78 YQNYSLFPHMNVKKNLEFGMRMKKIKDPKRVLDTARDLKIEHLLD-----------RNPLTLSGGEQQRVALARALVTNP 146 (229)
T ss_dssp CTTCCCCTTSCHHHHHHHHHHHHCCCCHHHHHHHHHHTTCTTTTT-----------SCGGGSCHHHHHHHHHHHHTTSCC
T ss_pred ccccccCccccHHHHHHHHHhhccccHHHHHHHHHHHhcchhhHh-----------CChhhCCHHHhcchhhhhhhhccC
Confidence 99999985 59999998863 235678888999888876554 345789999999999999999999
Q ss_pred CeeeeeCCCCCcCHHHHHHHHHHHHh---cCCCEEEEEccCCCcccc-CCEEEEEeCCeEEEccChHHHHhc
Q 037346 502 DIFLLDDPFSPVDDHTGAHLFKFCWV---SSSKTVIYATHQVEFLPA-ADLILVIKDGKITQAGKYSDILNS 569 (1156)
Q Consensus 502 ~illlDep~s~lD~~~~~~i~~~~~~---~~~~tvi~vtH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~~~ 569 (1156)
++|||||||++||+.++..+.+.+.. ..|.|+|+|||+++.+.. ||||++|++|+|++.|++++++++
T Consensus 147 ~iLllDEPts~LD~~~~~~i~~~l~~l~~~~g~tii~vtHd~~~~~~~~drv~vm~~G~iv~~g~~~el~~~ 218 (229)
T d3d31a2 147 KILLLDEPLSALDPRTQENAREMLSVLHKKNKLTVLHITHDQTEARIMADRIAVVMDGKLIQVGKPEEIFEK 218 (229)
T ss_dssp SEEEEESSSTTSCHHHHHHHHHHHHHHHHHTTCEEEEEESCHHHHHHHCSEEEEESSSCEEEEECHHHHHSS
T ss_pred CceeecCCCcCCCHHHHHHHHHHHHHHHhcCCcEEEEEcCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhC
Confidence 99999999999999999999876643 458999999999998764 999999999999999999999864
|
| >d1oxxk2 c.37.1.12 (K:1-242) Glucose transport protein GlcV, N-terminal domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Glucose transport protein GlcV, N-terminal domain species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Probab=100.00 E-value=7.4e-47 Score=400.58 Aligned_cols=202 Identities=27% Similarity=0.339 Sum_probs=178.4
Q ss_pred cEEEeeeEEEeCCCCCCCccccceEEeeCCeEEEEEcCCCCChHHHHHHHhCCCCCCCcEEEEcC---------------
Q 037346 357 AIEIIDGSFSWDFSSPNPTLRNINLKVFHGMRVAVCGTVGSGKSSCLSCILGGVPKESGIIRLCG--------------- 421 (1156)
Q Consensus 357 ~i~~~~~~f~~~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKSTll~~i~g~~~~~~G~i~~~g--------------- 421 (1156)
.|+++|++++|+. ++..+|+|+||+|++||+++|+||||||||||+++|.|+++|++|+|.++|
T Consensus 3 ~i~v~nlsk~y~~-g~~~aL~~vsl~i~~Ge~~~iiG~sGsGKSTll~~i~gl~~p~~G~I~~~g~~i~~~~~~~~~~~r 81 (242)
T d1oxxk2 3 RIIVKNVSKVFKK-GKVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPSTGELYFDDRLVASNGKLIVPPED 81 (242)
T ss_dssp CEEEEEEEEEEGG-GTEEEEEEEEEEECTTCEEEEECSCHHHHHHHHHHHHTSSCCSEEEEEETTEEEEETTEESSCGGG
T ss_pred EEEEEeEEEEECC-CCEEEEeceEEEECCCCEEEEECCCCCcHHHHHHHHHcCcCCCCceEEECCEEeecCchhhcchhh
Confidence 4899999999963 245789999999999999999999999999999999999999999999998
Q ss_pred -eEEEEecCCcCCC-ccHHHHhhcCCC---CC----HHHHHHHHHHhCCchhhhhCCCCCccccccCCCCCCHHHHHHHH
Q 037346 422 -TKAYVAQSPWIQS-GKIEENILFGKE---MD----RERYERVLEACSLKKDLEVLPFGDQTIIGERGINLSGGQKQRIQ 492 (1156)
Q Consensus 422 -~~~~v~Q~~~~~~-~ti~eni~~~~~---~~----~~~~~~~~~~~~l~~~~~~~~~g~~t~v~~~g~~LSgGqkqRi~ 492 (1156)
++|||+|+|.+|+ .||+|||.|+.. .+ +++.+++++.++|.+..+.. ..+|||||||||+
T Consensus 82 r~ig~vfQ~~~L~p~ltv~eni~~~l~~~~~~~~~~~~~v~~~l~~~gL~~~~~~~-----------p~~LSGGqkQRva 150 (242)
T d1oxxk2 82 RKIGMVFQTWALYPNLTAFENIAFPLTNMKMSKEEIRKRVEEVAKILDIHHVLNHF-----------PRELSGAQQQRVA 150 (242)
T ss_dssp SCEEEEETTSCCCTTSCHHHHHHGGGTTSSCCHHHHHHHHHHHHHHTTCGGGTTSC-----------GGGSCHHHHHHHH
T ss_pred ccceEEeccccccccccHHHHhhhhhHhhcCCHHHHHHHHHHHHhhcChHhhhhCC-----------hhhCCHHHHhHHH
Confidence 3799999999886 499999998753 22 35678889999997655544 4689999999999
Q ss_pred HHHhhccCCCeeeeeCCCCCcCHHHHHHHHHHHHh---cCCCEEEEEccCCCccc-cCCEEEEEeCCeEEEccChHHHHh
Q 037346 493 IARPLYQDADIFLLDDPFSPVDDHTGAHLFKFCWV---SSSKTVIYATHQVEFLP-AADLILVIKDGKITQAGKYSDILN 568 (1156)
Q Consensus 493 lAral~~~~~illlDep~s~lD~~~~~~i~~~~~~---~~~~tvi~vtH~~~~~~-~~d~i~~l~~G~i~~~g~~~~l~~ 568 (1156)
|||||..+|+++||||||++||+.++..+.+.+.. ..|.|+|+|||+++.+. .||+|++|++|+|++.|+++++.+
T Consensus 151 iARaL~~~P~llllDEPt~~LD~~~~~~i~~~i~~l~~~~g~tvi~vTHd~~~~~~~~dri~vm~~G~iv~~g~~~el~~ 230 (242)
T d1oxxk2 151 LARALVKDPSLLLLDEPFSNLDARMRDSARALVKEVQSRLGVTLLVVSHDPADIFAIADRVGVLVKGKLVQVGKPEDLYD 230 (242)
T ss_dssp HHHHHTTCCSEEEEESTTTTSCGGGHHHHHHHHHHHHHHHCCEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHHH
T ss_pred HHhHHhhcccceeecCCccCCCHHHHHHHHHHHHHHHhccCCEEEEEECCHHHHHHhCCEEEEEECCEEEEEcCHHHHHh
Confidence 99999999999999999999999999998876643 34899999999999875 599999999999999999999986
Q ss_pred cC
Q 037346 569 SG 570 (1156)
Q Consensus 569 ~~ 570 (1156)
+.
T Consensus 231 ~P 232 (242)
T d1oxxk2 231 NP 232 (242)
T ss_dssp SC
T ss_pred CC
Confidence 53
|
| >d1g2912 c.37.1.12 (1:1-240) Maltose transport protein MalK, N-terminal domain {Archaeon Thermococcus litoralis [TaxId: 2265]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Maltose transport protein MalK, N-terminal domain species: Archaeon Thermococcus litoralis [TaxId: 2265]
Probab=100.00 E-value=1.1e-46 Score=400.14 Aligned_cols=200 Identities=26% Similarity=0.352 Sum_probs=176.9
Q ss_pred cEEEeeeEEEeCCCCCCCccccceEEeeCCeEEEEEcCCCCChHHHHHHHhCCCCCCCcEEEEcC---------------
Q 037346 357 AIEIIDGSFSWDFSSPNPTLRNINLKVFHGMRVAVCGTVGSGKSSCLSCILGGVPKESGIIRLCG--------------- 421 (1156)
Q Consensus 357 ~i~~~~~~f~~~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKSTll~~i~g~~~~~~G~i~~~g--------------- 421 (1156)
.|+++|++++|+ +..+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|
T Consensus 3 ~i~v~nl~k~yg---~~~al~~vsl~i~~Ge~~~liG~sGaGKSTll~~i~gl~~p~sG~I~~~g~~i~~~~~~~~~~~~ 79 (240)
T d1g2912 3 GVRLVDVWKVFG---EVTAVREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEEPSRGQIYIGDKLVADPEKGIFVPPK 79 (240)
T ss_dssp EEEEEEEEEEET---TEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEEEEEGGGTEECCGG
T ss_pred cEEEEeEEEEEC---CEEEEcceeeEEcCCCEEEEECCCCChHHHHHHHHhcCCCCCCCEEEECCEEecccchhhhcccc
Confidence 589999999996 46799999999999999999999999999999999999999999999998
Q ss_pred --eEEEEecCCcCCCc-cHHHHhhcCC---CCC----HHHHHHHHHHhCCchhhhhCCCCCccccccCCCCCCHHHHHHH
Q 037346 422 --TKAYVAQSPWIQSG-KIEENILFGK---EMD----RERYERVLEACSLKKDLEVLPFGDQTIIGERGINLSGGQKQRI 491 (1156)
Q Consensus 422 --~~~~v~Q~~~~~~~-ti~eni~~~~---~~~----~~~~~~~~~~~~l~~~~~~~~~g~~t~v~~~g~~LSgGqkqRi 491 (1156)
++|||+|+|.+++. ||+||+.++. ..+ +++..++++.+++.+..+. .+.+|||||||||
T Consensus 80 ~r~ig~v~Q~~~L~~~ltV~eni~~~~~~~~~~~~e~~~~v~~~l~~~~l~~~~~~-----------~p~~LSGGqkQRv 148 (240)
T d1g2912 80 DRDIAMVFQSYALYPHMTVYDNIAFPLKLRKVPRQEIDQRVREVAELLGLTELLNR-----------KPRELSGGQRQRV 148 (240)
T ss_dssp GSSEEEECSCCCCCTTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHTCGGGTTC-----------CGGGSCHHHHHHH
T ss_pred cccceecccchhhcchhhhhHhhhhhHHHcCCCHHHHHHHHHHHHHHcCChhHhcC-----------ChhhCCHHHHHHH
Confidence 37999999998865 9999999863 122 3467788888998765443 4478999999999
Q ss_pred HHHHhhccCCCeeeeeCCCCCcCHHHHHHHHHHHHh---cCCCEEEEEccCCCcccc-CCEEEEEeCCeEEEccChHHHH
Q 037346 492 QIARPLYQDADIFLLDDPFSPVDDHTGAHLFKFCWV---SSSKTVIYATHQVEFLPA-ADLILVIKDGKITQAGKYSDIL 567 (1156)
Q Consensus 492 ~lAral~~~~~illlDep~s~lD~~~~~~i~~~~~~---~~~~tvi~vtH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~ 567 (1156)
+|||||..+|+++||||||++||+.++..+.+.+.. ..|.|+|+||||++.+.. ||||++|++|+|++.|+++|++
T Consensus 149 ~IAraL~~~P~iLllDEPt~~LD~~~~~~i~~~l~~l~~~~g~tvi~vTHd~~~~~~~~drv~vm~~G~iv~~G~~~el~ 228 (240)
T d1g2912 149 ALGRAIVRKPQVFLMDEPLSNLDAKLRVRMRAELKKLQRQLGVTTIYVTHDQVEAMTMGDRIAVMNRGVLQQVGSPDEVY 228 (240)
T ss_dssp HHHHHHHTCCSEEEEECTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHH
T ss_pred HHHHHHhcCCCEEEecCCCcccCHHHHHHHHHHHHHHHhccCCEEEEEcCCHHHHHHhCCEEEEEECCEEEEEcCHHHHH
Confidence 999999999999999999999999999999876643 348999999999998765 9999999999999999999998
Q ss_pred hcC
Q 037346 568 NSG 570 (1156)
Q Consensus 568 ~~~ 570 (1156)
++.
T Consensus 229 ~~P 231 (240)
T d1g2912 229 DKP 231 (240)
T ss_dssp HSC
T ss_pred hCC
Confidence 653
|
| >d3dhwc1 c.37.1.12 (C:1-240) Methionine import ATP-binding protein MetN {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Methionine import ATP-binding protein MetN species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=1.7e-46 Score=398.48 Aligned_cols=201 Identities=24% Similarity=0.346 Sum_probs=175.9
Q ss_pred EEEeeeEEEeCCCCC-CCccccceEEeeCCeEEEEEcCCCCChHHHHHHHhCCCCCCCcEEEEcCe--------------
Q 037346 358 IEIIDGSFSWDFSSP-NPTLRNINLKVFHGMRVAVCGTVGSGKSSCLSCILGGVPKESGIIRLCGT-------------- 422 (1156)
Q Consensus 358 i~~~~~~f~~~~~~~-~~~l~~i~l~i~~g~~~~ivG~~GsGKSTll~~i~g~~~~~~G~i~~~g~-------------- 422 (1156)
|+++|++++|+.+.. ..+|+|+||+|++||+++|+||||||||||+++|.|+.+|++|+|.++|+
T Consensus 2 i~v~nlsk~y~~~~~~~~al~~vsl~i~~Ge~~~iiG~sGsGKSTLl~~i~Gl~~p~sG~I~~~g~~i~~~~~~~~~~~r 81 (240)
T d3dhwc1 2 IKLSNITKVFHQGTRTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEGSVLVDGQELTTLSESELTKAR 81 (240)
T ss_dssp EEEEEEEEEEECSSCEEEEEEEEEEEECSSCEEEEEESTTSSHHHHHHHHTTSSCCSEEEEEETTEEECTTCHHHHHHHH
T ss_pred EEEEeEEEEeCCCCeeEEEeeceeEEEcCCCEEEEECCCCCCHHHHHHHHcCCccccCCceEEcCeEeeeCChhhhhhhh
Confidence 789999999975322 25799999999999999999999999999999999999999999999983
Q ss_pred --EEEEecCCcCCCc-cHHHHhhcCC-----CCC--HHHHHHHHHHhCCchhhhhCCCCCccccccCCCCCCHHHHHHHH
Q 037346 423 --KAYVAQSPWIQSG-KIEENILFGK-----EMD--RERYERVLEACSLKKDLEVLPFGDQTIIGERGINLSGGQKQRIQ 492 (1156)
Q Consensus 423 --~~~v~Q~~~~~~~-ti~eni~~~~-----~~~--~~~~~~~~~~~~l~~~~~~~~~g~~t~v~~~g~~LSgGqkqRi~ 492 (1156)
+|||||+|.+++. ||+|||.++. +.. +++..++++.++|.+..+ ..+.+|||||||||+
T Consensus 82 r~ig~VfQ~~~l~~~~tv~eni~~~l~~~~~~~~~~~~~v~~~L~~vgL~~~~~-----------~~~~~LSGG~~QRva 150 (240)
T d3dhwc1 82 RQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEVKRRVTELLSLVGLGDKHD-----------SYPSNLSGGQKQRVA 150 (240)
T ss_dssp HHEEECCSSCCCCTTSBHHHHHHHHHHTTTCCTTHHHHHHHHHHHHHSTTTTTS-----------SCBSCCCHHHHHHHH
T ss_pred ccccccccccccCCCccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhh-----------CChhhCCHHHHHHHH
Confidence 7999999988764 9999998752 222 356788899999876544 344689999999999
Q ss_pred HHHhhccCCCeeeeeCCCCCcCHHHHHHHHHHHHh---cCCCEEEEEccCCCccc-cCCEEEEEeCCeEEEccChHHHHh
Q 037346 493 IARPLYQDADIFLLDDPFSPVDDHTGAHLFKFCWV---SSSKTVIYATHQVEFLP-AADLILVIKDGKITQAGKYSDILN 568 (1156)
Q Consensus 493 lAral~~~~~illlDep~s~lD~~~~~~i~~~~~~---~~~~tvi~vtH~~~~~~-~~d~i~~l~~G~i~~~g~~~~l~~ 568 (1156)
|||||..+|++|||||||++||+.++..+++.+.. ..|.|+|+||||++.+. .||||++|++|+|++.|+++++++
T Consensus 151 iAraL~~~P~lLllDEPt~~LD~~~~~~i~~~l~~l~~~~g~tvi~vTHdl~~~~~~~dri~vl~~G~iv~~G~~~ei~~ 230 (240)
T d3dhwc1 151 IARALASNPKVLLCDEATSALDPATTRSILELLKDINRRLGLTILLITHEMDVVKRICDCVAVISNGELIEQDTVSEVFS 230 (240)
T ss_dssp HHHHHHTCCSEEEEESGGGSSCHHHHHHHHHHHHHHHHHHCCEEEEEBSCHHHHHHHCSEEEEEETTEEEEEEETTTTTC
T ss_pred HhhhhccCCCeEEeccccccCCHHHhhHHHHHHHHHHhccCCEEEEEcCCHHHHHHhCCEEEEEECCEEEEECCHHHHHh
Confidence 99999999999999999999999999999887643 34899999999999986 499999999999999999999875
Q ss_pred c
Q 037346 569 S 569 (1156)
Q Consensus 569 ~ 569 (1156)
+
T Consensus 231 ~ 231 (240)
T d3dhwc1 231 H 231 (240)
T ss_dssp S
T ss_pred C
Confidence 3
|
| >d1l2ta_ c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: MJ0796 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=100.00 E-value=4.4e-46 Score=393.40 Aligned_cols=196 Identities=27% Similarity=0.376 Sum_probs=165.6
Q ss_pred EEEeeeEEEeCCCCC-CCccccceEEeeCCeEEEEEcCCCCChHHHHHHHhCCCCCCCcEEEEcCe--------------
Q 037346 358 IEIIDGSFSWDFSSP-NPTLRNINLKVFHGMRVAVCGTVGSGKSSCLSCILGGVPKESGIIRLCGT-------------- 422 (1156)
Q Consensus 358 i~~~~~~f~~~~~~~-~~~l~~i~l~i~~g~~~~ivG~~GsGKSTll~~i~g~~~~~~G~i~~~g~-------------- 422 (1156)
|+++|++++|+.... ..+|+|+||+|++||+++|+||||||||||+++|.|+++|++|+|.++|.
T Consensus 2 I~i~nlsk~y~~~~~~~~al~~isl~i~~Ge~~~iiG~sGsGKSTLl~~i~gl~~p~sG~I~~~g~~i~~~~~~~~~~~r 81 (230)
T d1l2ta_ 2 IKLKNVTKTYKMGEEIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPTEGEVYIDNIKTNDLDDDELTKIR 81 (230)
T ss_dssp EEEEEEEEEEEETTEEEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHHH
T ss_pred EEEEeEEEEeCCCCeeEEEEeceEEEEcCCCEEEEECCCCCCcchhhHhccCCCCCCcceeEECCEEcCcCChhhcchhh
Confidence 789999999974322 24799999999999999999999999999999999999999999999983
Q ss_pred ---EEEEecCCcCCC-ccHHHHhhcCC------CCC-H---HHHHHHHHHhCCchhhhhCCCCCccccccCCCCCCHHHH
Q 037346 423 ---KAYVAQSPWIQS-GKIEENILFGK------EMD-R---ERYERVLEACSLKKDLEVLPFGDQTIIGERGINLSGGQK 488 (1156)
Q Consensus 423 ---~~~v~Q~~~~~~-~ti~eni~~~~------~~~-~---~~~~~~~~~~~l~~~~~~~~~g~~t~v~~~g~~LSgGqk 488 (1156)
+|||+|+|.+++ .||+||+.++. ..+ + ++..+.++..+|.+.+ ....+.+||||||
T Consensus 82 ~~~ig~v~Q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~----------~~~~p~~LSGGqk 151 (230)
T d1l2ta_ 82 RDKIGFVFQQFNLIPLLTALENVELPLIFKYRGAMSGEERRKRALECLKMAELEERF----------ANHKPNQLSGGQQ 151 (230)
T ss_dssp HHHEEEECTTCCCCTTSCHHHHHHHHHHTCCSSCCCHHHHHHHHHHHHHHTTCCGGG----------TTCCGGGSCHHHH
T ss_pred cceEEEEecchhhCcCccHHHHHhHHHHHhccCCCCHHHHHHHHHHHHHhhchhhhh----------hcCChhhCCHHHH
Confidence 799999998775 59999998742 122 2 2344555566664432 1234468999999
Q ss_pred HHHHHHHhhccCCCeeeeeCCCCCcCHHHHHHHHHHHHh---cCCCEEEEEccCCCccccCCEEEEEeCCeEEEccCh
Q 037346 489 QRIQIARPLYQDADIFLLDDPFSPVDDHTGAHLFKFCWV---SSSKTVIYATHQVEFLPAADLILVIKDGKITQAGKY 563 (1156)
Q Consensus 489 qRi~lAral~~~~~illlDep~s~lD~~~~~~i~~~~~~---~~~~tvi~vtH~~~~~~~~d~i~~l~~G~i~~~g~~ 563 (1156)
|||+|||||+.+|+++|||||||+||+.++..+++.+.. ..|+|+|+||||++.++.||||++|++|+|+++|++
T Consensus 152 QRvaIAraL~~~P~lLllDEPTs~LD~~~~~~i~~~l~~l~~~~g~tii~vTHd~~~a~~~drv~~m~~G~Iv~~g~~ 229 (230)
T d1l2ta_ 152 QRVAIARALANNPPIILADQPTGALDSKTGEKIMQLLKKLNEEDGKTVVVVTHDINVARFGERIIYLKDGEVEREEKL 229 (230)
T ss_dssp HHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHTTCCEEEEECSCHHHHTTSSEEEEEETTEEEEEEEC
T ss_pred HHHHHHhhhhcCCCEEEecCCccccCHHHHHHHHHHHHHHHHhhCCEEEEECCCHHHHHhCCEEEEEECCEEEEeccC
Confidence 999999999999999999999999999999999887643 458999999999998878999999999999998864
|
| >d1b0ua_ c.37.1.12 (A:) ATP-binding subunit of the histidine permease {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: ATP-binding subunit of the histidine permease species: Salmonella typhimurium [TaxId: 90371]
Probab=100.00 E-value=1.8e-44 Score=389.75 Aligned_cols=201 Identities=26% Similarity=0.410 Sum_probs=175.7
Q ss_pred cEEEeeeEEEeCCCCCCCccccceEEeeCCeEEEEEcCCCCChHHHHHHHhCCCCCCCcEEEEcCe--------------
Q 037346 357 AIEIIDGSFSWDFSSPNPTLRNINLKVFHGMRVAVCGTVGSGKSSCLSCILGGVPKESGIIRLCGT-------------- 422 (1156)
Q Consensus 357 ~i~~~~~~f~~~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKSTll~~i~g~~~~~~G~i~~~g~-------------- 422 (1156)
.|+++|++++|+ +..+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.
T Consensus 2 ~Lev~nl~k~yg---~~~al~~vs~~i~~GEi~~iiG~sGsGKSTLl~~i~Gl~~p~~G~I~~~G~~i~~~~~~~~~~~~ 78 (258)
T d1b0ua_ 2 KLHVIDLHKRYG---GHEVLKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEKPSEGAIIVNGQNINLVRDKDGQLKV 78 (258)
T ss_dssp CEEEEEEEEEET---TEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEECCEEECTTSSEEE
T ss_pred eEEEEEEEEEEC---CEEEEcceeeEEcCCCEEEEECCCCCcHHHHHHHHHcCccCCCCCEEECCEEeccCCccchhccc
Confidence 489999999996 467999999999999999999999999999999999999999999999983
Q ss_pred ------------EEEEecCCcCCC-ccHHHHhhcCC----CCC----HHHHHHHHHHhCCchhhhhCCCCCccccccCCC
Q 037346 423 ------------KAYVAQSPWIQS-GKIEENILFGK----EMD----RERYERVLEACSLKKDLEVLPFGDQTIIGERGI 481 (1156)
Q Consensus 423 ------------~~~v~Q~~~~~~-~ti~eni~~~~----~~~----~~~~~~~~~~~~l~~~~~~~~~g~~t~v~~~g~ 481 (1156)
+|||+|+|.+++ .||.||+.++. ..+ .++..++++.+++.+.... +...
T Consensus 79 ~~~~~~~~~r~~ig~vfQ~~~l~~~~tv~env~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~----------~~p~ 148 (258)
T d1b0ua_ 79 ADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVLGLSKHDARERALKYLAKVGIDERAQG----------KYPV 148 (258)
T ss_dssp SCHHHHHHHHHHEEEECSSCCCCTTSCHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTCCHHHHT----------SCGG
T ss_pred ccHhHHHHHhcceEEEEechhhccchhcchhhhhhHHHhcCCCHHHHHHHHHHHHHHcCCchhhhc----------cCcc
Confidence 689999998875 59999998752 222 3456778888888765421 2235
Q ss_pred CCCHHHHHHHHHHHhhccCCCeeeeeCCCCCcCHHHHHHHHHHHHh--cCCCEEEEEccCCCccc-cCCEEEEEeCCeEE
Q 037346 482 NLSGGQKQRIQIARPLYQDADIFLLDDPFSPVDDHTGAHLFKFCWV--SSSKTVIYATHQVEFLP-AADLILVIKDGKIT 558 (1156)
Q Consensus 482 ~LSgGqkqRi~lAral~~~~~illlDep~s~lD~~~~~~i~~~~~~--~~~~tvi~vtH~~~~~~-~~d~i~~l~~G~i~ 558 (1156)
+|||||||||+|||||+.+|+++||||||++||+.++..+++.+.. .+|+|+|+||||++.+. .||||++|++|+|+
T Consensus 149 ~LSGG~~QRv~iAraL~~~P~llilDEPT~gLD~~~~~~i~~ll~~l~~~g~til~vtHdl~~~~~~adri~vm~~G~iv 228 (258)
T d1b0ua_ 149 HLSGGQQQRVSIARALAMEPDVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHEMGFARHVSSHVIFLHQGKIE 228 (258)
T ss_dssp GSCHHHHHHHHHHHHHHTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHTTCCEEEECSCHHHHHHHCSEEEEEETTEEE
T ss_pred cccHHHHHHHHHHHHHhcCCCEEEeccccccCCHHHHHHHHHhhhhhcccCCceEEEeCCHHHHHHhCCEEEEEECCEEE
Confidence 8999999999999999999999999999999999999999876643 56899999999999986 49999999999999
Q ss_pred EccChHHHHhcC
Q 037346 559 QAGKYSDILNSG 570 (1156)
Q Consensus 559 ~~g~~~~l~~~~ 570 (1156)
+.|++++++++.
T Consensus 229 ~~g~~~ev~~~P 240 (258)
T d1b0ua_ 229 EEGDPEQVFGNP 240 (258)
T ss_dssp EEECHHHHHHSC
T ss_pred EEcCHHHHHhCC
Confidence 999999998653
|
| >d1ji0a_ c.37.1.12 (A:) Branched chain aminoacid ABC transporter {Thermotoga maritima, TM1139 [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Branched chain aminoacid ABC transporter species: Thermotoga maritima, TM1139 [TaxId: 2336]
Probab=100.00 E-value=7.9e-44 Score=381.56 Aligned_cols=201 Identities=25% Similarity=0.386 Sum_probs=170.2
Q ss_pred CccEEEeeeEEEeCCCCCCCccccceEEeeCCeEEEEEcCCCCChHHHHHHHhCCCCCCCcEEEEcCe------------
Q 037346 355 DTAIEIIDGSFSWDFSSPNPTLRNINLKVFHGMRVAVCGTVGSGKSSCLSCILGGVPKESGIIRLCGT------------ 422 (1156)
Q Consensus 355 ~~~i~~~~~~f~~~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKSTll~~i~g~~~~~~G~i~~~g~------------ 422 (1156)
+..++++|++++|+ +..+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+
T Consensus 4 d~~Lev~~l~k~yg---~~~al~~vs~~i~~Gei~~liGpnGaGKSTl~~~i~Gl~~p~~G~I~~~G~~i~~~~~~~~~r 80 (240)
T d1ji0a_ 4 DIVLEVQSLHVYYG---AIHAIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQKGKIIFNGQDITNKPAHVINR 80 (240)
T ss_dssp SEEEEEEEEEEEET---TEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHH
T ss_pred ceEEEEeeEEEEEC---CEEEEeeeeEEECCCCEEEEECCCCCcHHHHHHHHhCCCCCCccEEEecccccccccHHHHHH
Confidence 45799999999996 467999999999999999999999999999999999999999999999994
Q ss_pred --EEEEecCCcCCCc-cHHHHhhcCCC--CC----HHHHHHHHHHh-CCchhhhhCCCCCccccccCCCCCCHHHHHHHH
Q 037346 423 --KAYVAQSPWIQSG-KIEENILFGKE--MD----RERYERVLEAC-SLKKDLEVLPFGDQTIIGERGINLSGGQKQRIQ 492 (1156)
Q Consensus 423 --~~~v~Q~~~~~~~-ti~eni~~~~~--~~----~~~~~~~~~~~-~l~~~~~~~~~g~~t~v~~~g~~LSgGqkqRi~ 492 (1156)
++|+||++.+|+. ||+||+.++.. .+ .++.+++++.. ++.+. ..+.+.+|||||||||+
T Consensus 81 ~gi~~~~q~~~l~~~ltv~en~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-----------~~~~~~~LSGG~~Qrv~ 149 (240)
T d1ji0a_ 81 MGIALVPEGRRIFPELTVYENLMMGAYNRKDKEGIKRDLEWIFSLFPRLKER-----------LKQLGGTLSGGEQQMLA 149 (240)
T ss_dssp TTEEEECSSCCCCTTSBHHHHHHGGGTTCCCSSHHHHHHHHHHHHCHHHHTT-----------TTSBSSSSCHHHHHHHH
T ss_pred hcccccCcccccCCcccHHHHHHHHHHhcCCHHHHHHHHHHHHHHhhChHHH-----------HhCchhhCCHHHHHHHH
Confidence 6899999988864 99999987642 11 12223333322 22222 23455789999999999
Q ss_pred HHHhhccCCCeeeeeCCCCCcCHHHHHHHHHHHHh--cCCCEEEEEccCCCccc-cCCEEEEEeCCeEEEccChHHHHhc
Q 037346 493 IARPLYQDADIFLLDDPFSPVDDHTGAHLFKFCWV--SSSKTVIYATHQVEFLP-AADLILVIKDGKITQAGKYSDILNS 569 (1156)
Q Consensus 493 lAral~~~~~illlDep~s~lD~~~~~~i~~~~~~--~~~~tvi~vtH~~~~~~-~~d~i~~l~~G~i~~~g~~~~l~~~ 569 (1156)
|||||+.+|++|||||||++||+.++.++++.+.. .+|+|+|++||+++.+. .||||++|++|+|++.|+++++.++
T Consensus 150 iAraL~~~P~lLllDEPt~gLD~~~~~~i~~~i~~l~~~g~til~~tH~l~~~~~~~drv~vl~~G~iv~~g~~~el~~~ 229 (240)
T d1ji0a_ 150 IGRALMSRPKLLMMDEPSLGLAPILVSEVFEVIQKINQEGTTILLVEQNALGALKVAHYGYVLETGQIVLEGKASELLDN 229 (240)
T ss_dssp HHHHHTTCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCCEEEEESCHHHHHHHCSEEEEEETTEEEEEEEHHHHHTC
T ss_pred HHHHHHhCCCEeeecCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHhcC
Confidence 99999999999999999999999999999886643 56899999999998875 5999999999999999999999864
|
| >d1g6ha_ c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: MJ1267 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=100.00 E-value=2.2e-43 Score=382.18 Aligned_cols=198 Identities=21% Similarity=0.323 Sum_probs=171.0
Q ss_pred cEEEeeeEEEeCCCCCCCccccceEEeeCCeEEEEEcCCCCChHHHHHHHhCCCCCCCcEEEEcCe--------------
Q 037346 357 AIEIIDGSFSWDFSSPNPTLRNINLKVFHGMRVAVCGTVGSGKSSCLSCILGGVPKESGIIRLCGT-------------- 422 (1156)
Q Consensus 357 ~i~~~~~~f~~~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKSTll~~i~g~~~~~~G~i~~~g~-------------- 422 (1156)
.++++|++++|+ +..+|+||||++++||+++|+||||||||||+++|+|+++|++|+|.++|+
T Consensus 4 iL~v~nlsk~yg---~~~aL~~vs~~v~~Gei~~liG~nGaGKSTLl~~i~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~g 80 (254)
T d1g6ha_ 4 ILRTENIVKYFG---EFKALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVYFENKDITNKEPAELYHYG 80 (254)
T ss_dssp EEEEEEEEEEET---TEEEEEEECCEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHHT
T ss_pred eEEEEEEEEEEC---CeEEEcceEEEECCCCEEEEECCCCCcHHHHHHHHHCCCcCCCcEEEECCEeccchhHHHHHHhc
Confidence 589999999996 467999999999999999999999999999999999999999999999994
Q ss_pred EEEEecCCcCCC-ccHHHHhhcCCC-----------------CCH---HHHHHHHHHhCCchhhhhCCCCCccccccCCC
Q 037346 423 KAYVAQSPWIQS-GKIEENILFGKE-----------------MDR---ERYERVLEACSLKKDLEVLPFGDQTIIGERGI 481 (1156)
Q Consensus 423 ~~~v~Q~~~~~~-~ti~eni~~~~~-----------------~~~---~~~~~~~~~~~l~~~~~~~~~g~~t~v~~~g~ 481 (1156)
++|+||+|.++. .||+||+.++.. ..+ ++..++++..++.... .+...
T Consensus 81 i~~v~Q~~~~~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-----------~~~~~ 149 (254)
T d1g6ha_ 81 IVRTFQTPQPLKEMTVLENLLIGEICPGESPLNSLFYKKWIPKEEEMVEKAFKILEFLKLSHLY-----------DRKAG 149 (254)
T ss_dssp EEECCCCCGGGGGSBHHHHHHGGGTSTTSCHHHHHHHCSSCCCCHHHHHHHHHHHHHTTCGGGT-----------TSBGG
T ss_pred CCccCCccccCCCCeeeeeeeehhhhccccchhhhhhhcccccHHHHHHHHHHHHHhcCcchhc-----------cCchh
Confidence 799999998764 599999988631 112 2344556666665433 24457
Q ss_pred CCCHHHHHHHHHHHhhccCCCeeeeeCCCCCcCHHHHHHHHHHHHh--cCCCEEEEEccCCCccc-cCCEEEEEeCCeEE
Q 037346 482 NLSGGQKQRIQIARPLYQDADIFLLDDPFSPVDDHTGAHLFKFCWV--SSSKTVIYATHQVEFLP-AADLILVIKDGKIT 558 (1156)
Q Consensus 482 ~LSgGqkqRi~lAral~~~~~illlDep~s~lD~~~~~~i~~~~~~--~~~~tvi~vtH~~~~~~-~~d~i~~l~~G~i~ 558 (1156)
+|||||||||+|||||+.+|++|||||||++||+.++..+++.+.. .+|+|+|+|||+++.+. .||||++|++|+|+
T Consensus 150 ~LSgG~~Qrv~iAraL~~~P~llilDEPt~gLD~~~~~~i~~~i~~l~~~g~til~vsHdl~~~~~~~Drv~vm~~G~iv 229 (254)
T d1g6ha_ 150 ELSGGQMKLVEIGRALMTNPKMIVMDEPIAGVAPGLAHDIFNHVLELKAKGITFLIIEHRLDIVLNYIDHLYVMFNGQII 229 (254)
T ss_dssp GSCHHHHHHHHHHHHHHTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCCSTTGGGCSEEEEEETTEEE
T ss_pred hCCcHHHHHHHHHHHHHhCcCchhhcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCcHHHHHHhCCEEEEEeCCEEE
Confidence 8999999999999999999999999999999999999999887643 56899999999999975 59999999999999
Q ss_pred EccChHHHHh
Q 037346 559 QAGKYSDILN 568 (1156)
Q Consensus 559 ~~g~~~~l~~ 568 (1156)
.+|+++|+.+
T Consensus 230 ~~g~~~e~~~ 239 (254)
T d1g6ha_ 230 AEGRGEEEIK 239 (254)
T ss_dssp EEEESHHHHH
T ss_pred EEecHHHHhh
Confidence 9999998754
|
| >d1vpla_ c.37.1.12 (A:) Putative ABC transporter TM0544 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative ABC transporter TM0544 species: Thermotoga maritima [TaxId: 2336]
Probab=100.00 E-value=2.5e-43 Score=376.66 Aligned_cols=199 Identities=22% Similarity=0.305 Sum_probs=173.4
Q ss_pred ccEEEeeeEEEeCCCCCCCccccceEEeeCCeEEEEEcCCCCChHHHHHHHhCCCCCCCcEEEEcCe------------E
Q 037346 356 TAIEIIDGSFSWDFSSPNPTLRNINLKVFHGMRVAVCGTVGSGKSSCLSCILGGVPKESGIIRLCGT------------K 423 (1156)
Q Consensus 356 ~~i~~~~~~f~~~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKSTll~~i~g~~~~~~G~i~~~g~------------~ 423 (1156)
++|+++|++++|+ ++++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|. +
T Consensus 1 gaI~v~nl~k~yg---~~~vl~~vs~~v~~Gei~glvG~nGaGKSTLl~~l~G~~~p~~G~i~i~G~~i~~~~~~~~~~i 77 (238)
T d1vpla_ 1 GAVVVKDLRKRIG---KKEILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPSSGIVTVFGKNVVEEPHEVRKLI 77 (238)
T ss_dssp CCEEEEEEEEEET---TEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEETTTCHHHHHTTE
T ss_pred CCEEEEeEEEEEC---CEEEEccceeEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCCEEEECcEecccChHHHHhhE
Confidence 3689999999996 568999999999999999999999999999999999999999999999984 6
Q ss_pred EEEecCCcCCC-ccHHHHhhcCCC---CCH----HHHHHHHHHhCCchhhhhCCCCCccccccCCCCCCHHHHHHHHHHH
Q 037346 424 AYVAQSPWIQS-GKIEENILFGKE---MDR----ERYERVLEACSLKKDLEVLPFGDQTIIGERGINLSGGQKQRIQIAR 495 (1156)
Q Consensus 424 ~~v~Q~~~~~~-~ti~eni~~~~~---~~~----~~~~~~~~~~~l~~~~~~~~~g~~t~v~~~g~~LSgGqkqRi~lAr 495 (1156)
+||||++.++. .|++||+.|... .+. +..+++++.+++.+..+ ++..+||||||||++|||
T Consensus 78 ~~vpq~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-----------~~~~~lSgG~~qrv~iA~ 146 (238)
T d1vpla_ 78 SYLPEEAGAYRNMQGIEYLRFVAGFYASSSSEIEEMVERATEIAGLGEKIK-----------DRVSTYSKGMVRKLLIAR 146 (238)
T ss_dssp EEECTTCCCCTTSBHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCGGGGG-----------SBGGGCCHHHHHHHHHHH
T ss_pred eEeeeccccCCCccHHHHHHHHHHhcCCCHHHHHHHHHHHHHhCCCHHHHh-----------hhhhhCCHHHHHHHHHHH
Confidence 99999998765 599999976421 222 34566777777765543 445689999999999999
Q ss_pred hhccCCCeeeeeCCCCCcCHHHHHHHHHHHHh--cCCCEEEEEccCCCccc-cCCEEEEEeCCeEEEccChHHHHh
Q 037346 496 PLYQDADIFLLDDPFSPVDDHTGAHLFKFCWV--SSSKTVIYATHQVEFLP-AADLILVIKDGKITQAGKYSDILN 568 (1156)
Q Consensus 496 al~~~~~illlDep~s~lD~~~~~~i~~~~~~--~~~~tvi~vtH~~~~~~-~~d~i~~l~~G~i~~~g~~~~l~~ 568 (1156)
||+++|+++||||||++||+.++..+++.+.. .+|+|||++||+++.+. .||||++|++|+|++.|+++++.+
T Consensus 147 al~~~p~illLDEPt~gLD~~~~~~i~~~i~~~~~~g~tii~~tH~l~~~~~~~drv~vl~~G~iv~~g~~~el~~ 222 (238)
T d1vpla_ 147 ALMVNPRLAILDEPTSGLDVLNAREVRKILKQASQEGLTILVSSHNMLEVEFLCDRIALIHNGTIVETGTVEELKE 222 (238)
T ss_dssp HHTTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEEECCHHHHTTTCSEEEEEETTEEEEEEEHHHHHH
T ss_pred HHhcCCCEEEecCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHh
Confidence 99999999999999999999999988776533 56899999999999986 599999999999999999999975
|
| >d2onka1 c.37.1.12 (A:1-240) Molybdate/tungstate import ATP-binding protein WtpC (ModC) {Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Molybdate/tungstate import ATP-binding protein WtpC (ModC) species: Archaeoglobus fulgidus [TaxId: 2234]
Probab=100.00 E-value=5.8e-43 Score=369.57 Aligned_cols=196 Identities=26% Similarity=0.394 Sum_probs=166.4
Q ss_pred EEEeeeEEEeCCCCCCCccccceEEeeCCeEEEEEcCCCCChHHHHHHHhCCCCCCCcEEEEcCe-----------EEEE
Q 037346 358 IEIIDGSFSWDFSSPNPTLRNINLKVFHGMRVAVCGTVGSGKSSCLSCILGGVPKESGIIRLCGT-----------KAYV 426 (1156)
Q Consensus 358 i~~~~~~f~~~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKSTll~~i~g~~~~~~G~i~~~g~-----------~~~v 426 (1156)
+++ ++...|. + ..+ |+||+++ ||+++|+||||||||||+++|+|+++|++|+|.++|. +|||
T Consensus 3 l~v-~~~k~~g---~-~~~-~vs~~~~-~e~~~liGpnGaGKSTll~~i~Gl~~p~~G~I~~~G~~i~~~~~~~r~ig~v 75 (240)
T d2onka1 3 LKV-RAEKRLG---N-FRL-NVDFEMG-RDYCVLLGPTGAGKSVFLELIAGIVKPDRGEVRLNGADITPLPPERRGIGFV 75 (240)
T ss_dssp EEE-EEEEEET---T-EEE-EEEEEEC-SSEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCTTTSCCBCC
T ss_pred EEE-EEEEEEC---C-EEE-EEEEEeC-CEEEEEECCCCChHHHHHHHHHcCCCCCceEEEECCEECCcCCHHHcCceee
Confidence 455 5667774 2 234 7999995 6899999999999999999999999999999999994 7999
Q ss_pred ecCCcCCC-ccHHHHhhcCCC-CC----HHHHHHHHHHhCCchhhhhCCCCCccccccCCCCCCHHHHHHHHHHHhhccC
Q 037346 427 AQSPWIQS-GKIEENILFGKE-MD----RERYERVLEACSLKKDLEVLPFGDQTIIGERGINLSGGQKQRIQIARPLYQD 500 (1156)
Q Consensus 427 ~Q~~~~~~-~ti~eni~~~~~-~~----~~~~~~~~~~~~l~~~~~~~~~g~~t~v~~~g~~LSgGqkqRi~lAral~~~ 500 (1156)
||+|.+|+ .||+|||.|+.. .+ +++.+++++.++|.+..+ ....+|||||||||+|||||+.+
T Consensus 76 ~Q~~~l~~~ltV~enl~~~l~~~~~~~~~~~v~~~l~~~gl~~~~~-----------~~~~~LSGG~kQRvaiAral~~~ 144 (240)
T d2onka1 76 PQDYALFPHLSVYRNIAYGLRNVERVERDRRVREMAEKLGIAHLLD-----------RKPARLSGGERQRVALARALVIQ 144 (240)
T ss_dssp CSSCCCCTTSCHHHHHHTTCTTSCHHHHHHHHHHHHHTTTCTTTTT-----------CCGGGSCHHHHHHHHHHHHHTTC
T ss_pred ccchhhcccchhhHhhhhhhcccCHHHHHHHHHHHHHhcCcHhhhh-----------CChhhCCHHHHHHHHHHHHHhcc
Confidence 99999986 599999999853 22 345667777777765444 44578999999999999999999
Q ss_pred CCeeeeeCCCCCcCHHHHHHHHHHHHh---cCCCEEEEEccCCCcccc-CCEEEEEeCCeEEEccChHHHHhcCc
Q 037346 501 ADIFLLDDPFSPVDDHTGAHLFKFCWV---SSSKTVIYATHQVEFLPA-ADLILVIKDGKITQAGKYSDILNSGT 571 (1156)
Q Consensus 501 ~~illlDep~s~lD~~~~~~i~~~~~~---~~~~tvi~vtH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~~~~~ 571 (1156)
|+++||||||++||+.++..+.+.+.. ..|.|+|+|||+++.+.. ||+|++|++|++++.|+++++.+...
T Consensus 145 P~illlDEPts~LD~~~~~~i~~~i~~l~~~~g~tvi~vtHd~~~~~~~adri~vm~~G~ii~~G~~~el~~~~~ 219 (240)
T d2onka1 145 PRLLLLDEPLSAVDLKTKGVLMEELRFVQREFDVPILHVTHDLIEAAMLADEVAVMLNGRIVEKGKLKELFSAKN 219 (240)
T ss_dssp CSSBEEESTTSSCCHHHHHHHHHHHHHHHHHHTCCEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHHHSCC
T ss_pred CCceEecCccccCCHHHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHHhCCEEEEEECCEEEEEecHHHHhcCCC
Confidence 999999999999999999999887643 348999999999998764 99999999999999999999986543
|
| >d1r0wa_ c.37.1.12 (A:) Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain species: Mouse (Mus musculus) [TaxId: 10090]
Probab=100.00 E-value=1.6e-40 Score=364.21 Aligned_cols=191 Identities=19% Similarity=0.315 Sum_probs=174.8
Q ss_pred CCeEEEEEEEEEEcCCCCceeeCCCCCCHHHHHHHHhhcccCCCceEEEcCeeCCCCChHHHhhcCeeeccccccccccc
Q 037346 945 HGEVNIRHLQVRYAPNLPLVLRGRTGSGKSTLIQTLFRIVESTAGHILIDGKDISLIGLHDLRTRLSIIPQDPTMFEGTT 1024 (1156)
Q Consensus 945 ~g~I~~~~Vsf~Y~~~~~~vL~G~SGsGKSTL~~lL~rl~~p~~G~I~idG~di~~i~~~~LR~~i~~VpQdp~LF~gTI 1024 (1156)
.|.-.++||+|..++++.++|.||||||||||+++|+|+++|++|+|.+|| +|+||||+|.+|++||
T Consensus 47 ~g~pvL~~isl~i~~Ge~vaivG~nGsGKSTLl~~i~Gl~~p~~G~I~~~g-------------~i~~v~Q~~~l~~~tv 113 (281)
T d1r0wa_ 47 VGNPVLKNINLNIEKGEMLAITGSTGSGKTSLLMLILGELEASEGIIKHSG-------------RVSFCSQFSWIMPGTI 113 (281)
T ss_dssp TTCEEEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTSSCCSEEEEECCS-------------CEEEECSSCCCCSEEH
T ss_pred CCCeEEeCeEEEEcCCCEEEEECCCCChHHHHHHHHhCCCcCCCcEEEECC-------------EEEEEeccccccCcee
Confidence 355689999999999999999999999999999999999999999999998 4899999999999999
Q ss_pred hhccCCCCCCCHHHHHHHHHHcCCChHHHhhcCCcccc------------------ccccccCCCEEEEecCCcCCCHHH
Q 037346 1025 RSNLDPLEEHADEQIWEALDKCQLGDEVRKKKGKLDSQ------------------GRVLLKKSKVLVLDEATASVDTAT 1086 (1156)
Q Consensus 1025 r~Nl~~~~~~~deei~~al~~~~l~~~i~~lp~gl~s~------------------ARALLr~~~ILiLDEaTS~LD~~t 1086 (1156)
++||.++....+.+++++++.+++.+++..+|+++++. ||||+++|+|||||||||+||+.+
T Consensus 114 ~eni~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~LSgGqkQRv~lARaL~~~p~illLDEPts~LD~~~ 193 (281)
T d1r0wa_ 114 KENIIFGVSYDEYRYKSVVKACQLQQDITKFAEQDNTVLGEGGVTLSGGQRARISLARAVYKDADLYLLDSPFGYLDVFT 193 (281)
T ss_dssp HHHHTTTSCCCHHHHHHHHHHTTCHHHHTTSTTGGGCEECTTCTTSCHHHHHHHHHHHHHHSCCSEEEEESCCCSSCHHH
T ss_pred eccccccccccchHHHHHHHHHHhHHHHHhchhhhhhhhhhhccCCCHHHHHHHHHHHHHHhCccchhhcCccccCCHHH
Confidence 99999888888999999999999999999999887743 899999999999999999999999
Q ss_pred HHHHHHH-HHHhcCCceEEEeecCcccccccCEEEEEeCcEEeeecChhHHhcCCCChHHHHHH
Q 037346 1087 DNQIQQT-LRQHFSDCTVVTIAHRITSVLDSAMVLLLNHGLIKEYDSPTKLLENKSSSFAQLVA 1149 (1156)
Q Consensus 1087 e~~I~~~-l~~~~~~~TvI~IaHrl~ti~~~D~I~Vl~~G~IvE~G~~~eLl~~~~g~f~~l~~ 1149 (1156)
++.|.+. +....+++|+|+||||++.+..||||+||++|+|+++|+|+||++. ++.|++.+.
T Consensus 194 ~~~i~~~~~~~~~~~~tvi~itH~~~~l~~aDrI~vl~~G~i~~~Gt~~eL~~~-~~~~~~~~~ 256 (281)
T d1r0wa_ 194 EEQVFESCVCKLMANKTRILVTSKMEHLRKADKILILHQGSSYFYGTFSELQSL-RPDFSSKLM 256 (281)
T ss_dssp HHHHHHHCCCCCTTTSEEEEECSCHHHHHTCSEEEEEETTEEEEEECHHHHHHH-CHHHHHHHH
T ss_pred HHHHHHHHHHHhhCCCEEEEEechHHHHHhCCEEEEEECCEEEEECCHHHHhcc-CcHHHHHHc
Confidence 9988775 5555678999999999999999999999999999999999999975 456765543
|
| >d3d31a2 c.37.1.12 (A:1-229) Sulfate/molybdate ABC transporter, ATP-binding protein {Methanosarcina acetivorans [TaxId: 2214]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Sulfate/molybdate ABC transporter, ATP-binding protein species: Methanosarcina acetivorans [TaxId: 2214]
Probab=100.00 E-value=3.7e-40 Score=346.65 Aligned_cols=195 Identities=19% Similarity=0.344 Sum_probs=176.3
Q ss_pred EEEEEEEEEEcCCCCceeeCCCCCCHHHHHHHHhhcccCCCceEEEcCeeCCCCChHHHhhcCeeeccccccccc-cchh
Q 037346 948 VNIRHLQVRYAPNLPLVLRGRTGSGKSTLIQTLFRIVESTAGHILIDGKDISLIGLHDLRTRLSIIPQDPTMFEG-TTRS 1026 (1156)
Q Consensus 948 I~~~~Vsf~Y~~~~~~vL~G~SGsGKSTL~~lL~rl~~p~~G~I~idG~di~~i~~~~LR~~i~~VpQdp~LF~g-TIr~ 1026 (1156)
..++||||..++++-++|.||||||||||+++|.|+.+|++|+|++||.|+++++.. |++||+|||++.||.. |++|
T Consensus 14 ~aL~~vs~~i~~Ge~~~liGpsGaGKSTll~~l~Gl~~p~sG~I~~~G~~i~~~~~~--~r~ig~v~Q~~~l~~~~tV~e 91 (229)
T d3d31a2 14 FSLDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHVPDSGRILLDGKDVTDLSPE--KHDIAFVYQNYSLFPHMNVKK 91 (229)
T ss_dssp CEEEEEEEEECTTCEEEEECCCTHHHHHHHHHHHTSSCCSEEEEEETTEECTTSCHH--HHTCEEECTTCCCCTTSCHHH
T ss_pred EEEeeeEEEECCCCEEEEECCCCCcHHHHHHHHhcCcCCCCCEEEEccEeccccchh--HhcceeeccccccCccccHHH
Confidence 468999999999999999999999999999999999999999999999999988765 7899999999999965 9999
Q ss_pred ccCCC----CCCCHHHHHHHHHHcCCChHHHhhcCCcccc-------ccccccCCCEEEEecCCcCCCHHHHHHHHHHHH
Q 037346 1027 NLDPL----EEHADEQIWEALDKCQLGDEVRKKKGKLDSQ-------GRVLLKKSKVLVLDEATASVDTATDNQIQQTLR 1095 (1156)
Q Consensus 1027 Nl~~~----~~~~deei~~al~~~~l~~~i~~lp~gl~s~-------ARALLr~~~ILiLDEaTS~LD~~te~~I~~~l~ 1095 (1156)
|+.++ +...++++.++++.+++.++....|..|.-+ ||||+.+|+|||||||||+||+.+.+.|++.|+
T Consensus 92 nl~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSGG~~QRvaiAraL~~~P~iLllDEPts~LD~~~~~~i~~~l~ 171 (229)
T d3d31a2 92 NLEFGMRMKKIKDPKRVLDTARDLKIEHLLDRNPLTLSGGEQQRVALARALVTNPKILLLDEPLSALDPRTQENAREMLS 171 (229)
T ss_dssp HHHHHHHHHCCCCHHHHHHHHHHTTCTTTTTSCGGGSCHHHHHHHHHHHHTTSCCSEEEEESSSTTSCHHHHHHHHHHHH
T ss_pred HHHHHHhhccccHHHHHHHHHHHhcchhhHhCChhhCCHHHhcchhhhhhhhccCCceeecCCCcCCCHHHHHHHHHHHH
Confidence 99642 2335778999999999999988888877654 899999999999999999999999999999998
Q ss_pred Hhc--CCceEEEeecCcccccc-cCEEEEEeCcEEeeecChhHHhcCCCChH
Q 037346 1096 QHF--SDCTVVTIAHRITSVLD-SAMVLLLNHGLIKEYDSPTKLLENKSSSF 1144 (1156)
Q Consensus 1096 ~~~--~~~TvI~IaHrl~ti~~-~D~I~Vl~~G~IvE~G~~~eLl~~~~g~f 1144 (1156)
++. .+.|+|+|||+++.+.. ||||+||++|+|++.|+|+|+++++...|
T Consensus 172 ~l~~~~g~tii~vtHd~~~~~~~~drv~vm~~G~iv~~g~~~el~~~P~~~~ 223 (229)
T d3d31a2 172 VLHKKNKLTVLHITHDQTEARIMADRIAVVMDGKLIQVGKPEEIFEKPVEGR 223 (229)
T ss_dssp HHHHHTTCEEEEEESCHHHHHHHCSEEEEESSSCEEEEECHHHHHSSCCTTH
T ss_pred HHHhcCCcEEEEEcCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhCCCCHH
Confidence 864 37899999999998876 99999999999999999999998876544
|
| >d1v43a3 c.37.1.12 (A:7-245) Hypothetical protein PH0022, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Hypothetical protein PH0022, N-terminal domain species: Pyrococcus horikoshii [TaxId: 53953]
Probab=100.00 E-value=4.6e-39 Score=340.45 Aligned_cols=197 Identities=19% Similarity=0.314 Sum_probs=168.3
Q ss_pred eEEEEEEEEEEcCCCCceeeCCCCCCHHHHHHHHhhcccCCCceEEEcCeeCCCCChHHHhhcCeeecccccccc-ccch
Q 037346 947 EVNIRHLQVRYAPNLPLVLRGRTGSGKSTLIQTLFRIVESTAGHILIDGKDISLIGLHDLRTRLSIIPQDPTMFE-GTTR 1025 (1156)
Q Consensus 947 ~I~~~~Vsf~Y~~~~~~vL~G~SGsGKSTL~~lL~rl~~p~~G~I~idG~di~~i~~~~LR~~i~~VpQdp~LF~-gTIr 1025 (1156)
...++||||..++++-++|.||||||||||+++|.|+++|++|+|.+||.|+++++.. |++||+|||+|.||. -|++
T Consensus 19 ~~al~~vsl~v~~Ge~~~liGpsGaGKSTLl~~i~Gl~~p~sG~I~i~g~~i~~~~~~--~r~ig~v~Q~~~l~~~ltv~ 96 (239)
T d1v43a3 19 FTAVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPTEGRIYFGDRDVTYLPPK--DRNISMVFQSYAVWPHMTVY 96 (239)
T ss_dssp EEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCGG--GGTEEEEEC------CCCHH
T ss_pred EEEEcceeEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCCCEEEEcceecccCCcc--cceEEEEeechhhcccchHH
Confidence 3467777777778888889999999999999999999999999999999999998865 678999999999996 5999
Q ss_pred hccCCCC---CCC----HHHHHHHHHHcCCChHHHhhcCCcccc-------ccccccCCCEEEEecCCcCCCHHHHHHHH
Q 037346 1026 SNLDPLE---EHA----DEQIWEALDKCQLGDEVRKKKGKLDSQ-------GRVLLKKSKVLVLDEATASVDTATDNQIQ 1091 (1156)
Q Consensus 1026 ~Nl~~~~---~~~----deei~~al~~~~l~~~i~~lp~gl~s~-------ARALLr~~~ILiLDEaTS~LD~~te~~I~ 1091 (1156)
||+.++. ..+ ++.+.++|+.+++.++....|..|.-+ ||||+.+|+|||||||||+||+.+...|.
T Consensus 97 enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSGGq~QRvaiAraL~~~P~iLllDEPts~LD~~~~~~i~ 176 (239)
T d1v43a3 97 ENIAFPLKIKKFPKDEIDKRVRWAAELLQIEELLNRYPAQLSGGQRQRVAVARAIVVEPDVLLMDEPLSNLDAKLRVAMR 176 (239)
T ss_dssp HHHHTTCC--CCCHHHHHHHHHHHHHHTTCGGGTTSCTTTCCSSCHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhhcCChhhCCHHHHHHHHHHhhhccCCCceeecCCcccCCHHHHHHHH
Confidence 9997643 233 345778999999999988888877655 89999999999999999999999999999
Q ss_pred HHHHHhc--CCceEEEeecCcccccc-cCEEEEEeCcEEeeecChhHHhcCCCChHH
Q 037346 1092 QTLRQHF--SDCTVVTIAHRITSVLD-SAMVLLLNHGLIKEYDSPTKLLENKSSSFA 1145 (1156)
Q Consensus 1092 ~~l~~~~--~~~TvI~IaHrl~ti~~-~D~I~Vl~~G~IvE~G~~~eLl~~~~g~f~ 1145 (1156)
+.|+++. .++|+|+|||+++.+.. ||||+||++|+|++.|+|+|+++++...|-
T Consensus 177 ~ll~~l~~~~g~tii~vTHd~~~a~~~~dri~vm~~G~iv~~G~~~el~~~P~~~~~ 233 (239)
T d1v43a3 177 AEIKKLQQKLKVTTIYVTHDQVEAMTMGDRIAVMNRGQLLQIGSPTEVYLRPNSVFV 233 (239)
T ss_dssp HHHHHHHHHHTCEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHHHCCSBHHH
T ss_pred HHHHHHHHhcCCeEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhCCCCHHH
Confidence 9999864 28999999999998866 999999999999999999999998776654
|
| >d2awna2 c.37.1.12 (A:4-235) Maltose transport protein MalK, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Maltose transport protein MalK, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=3.1e-39 Score=340.76 Aligned_cols=197 Identities=18% Similarity=0.303 Sum_probs=151.8
Q ss_pred eEEEEEEEEEEcCCCCceeeCCCCCCHHHHHHHHhhcccCCCceEEEcCeeCCCCChHHHhhcCeeeccccccccc-cch
Q 037346 947 EVNIRHLQVRYAPNLPLVLRGRTGSGKSTLIQTLFRIVESTAGHILIDGKDISLIGLHDLRTRLSIIPQDPTMFEG-TTR 1025 (1156)
Q Consensus 947 ~I~~~~Vsf~Y~~~~~~vL~G~SGsGKSTL~~lL~rl~~p~~G~I~idG~di~~i~~~~LR~~i~~VpQdp~LF~g-TIr 1025 (1156)
...++||||..++++-++|.||||||||||+++|.|+++|++|+|.+||.++.+.+.. |++||+|||+|.||.. |++
T Consensus 13 ~~~l~~isl~i~~Gei~~liGpsGsGKSTLl~~i~Gl~~p~sG~I~i~g~~i~~~~~~--~r~ig~v~Q~~~l~~~~tv~ 90 (232)
T d2awna2 13 VVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETITSGDLFIGEKRMNDTPPA--ERGVGMVFQSYALYPHLSVA 90 (232)
T ss_dssp EEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEESSSCCTTSCGG--GTCEEEECSSCCC-------
T ss_pred EEEEeeeEEEEcCCCEEEEECCCCChHHHHHHHHhcCCCCCCCEEEECCEECCCCchh--hceeeeeccccccccchhHH
Confidence 4567888888888988899999999999999999999999999999999999988754 6789999999999965 999
Q ss_pred hccCCCCC-------CCHHHHHHHHHHcCCChHHHhhcCCcccc-------ccccccCCCEEEEecCCcCCCHHHHHHHH
Q 037346 1026 SNLDPLEE-------HADEQIWEALDKCQLGDEVRKKKGKLDSQ-------GRVLLKKSKVLVLDEATASVDTATDNQIQ 1091 (1156)
Q Consensus 1026 ~Nl~~~~~-------~~deei~~al~~~~l~~~i~~lp~gl~s~-------ARALLr~~~ILiLDEaTS~LD~~te~~I~ 1091 (1156)
||+.++.. ..++.+.++++.+++.++....|..|.-+ ||||+.+|+|||||||||+||+.+.+.|+
T Consensus 91 eni~~~~~~~~~~~~~~~~~v~~~l~~~~l~~~~~~~~~~LSGGqkQRvaiAraL~~~P~illlDEPts~LD~~~~~~i~ 170 (232)
T d2awna2 91 ENMSFGLKLAGAKKEVINQRVNQVAEVLQLAHLLDRKPKALSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAALRVQMR 170 (232)
T ss_dssp --------------CHHHHHHHHHHHHC---------------------CHHHHHHTCCSEEEEESTTTTSCHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHhCCChhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHH
Confidence 99976421 12456899999999999888887776644 89999999999999999999999999999
Q ss_pred HHHHHhc--CCceEEEeecCcccccc-cCEEEEEeCcEEeeecChhHHhcCCCChHH
Q 037346 1092 QTLRQHF--SDCTVVTIAHRITSVLD-SAMVLLLNHGLIKEYDSPTKLLENKSSSFA 1145 (1156)
Q Consensus 1092 ~~l~~~~--~~~TvI~IaHrl~ti~~-~D~I~Vl~~G~IvE~G~~~eLl~~~~g~f~ 1145 (1156)
+.|++.. .++|+|+|||+++.+.. ||||+||++|+|++.|+|+|+++++...|-
T Consensus 171 ~~l~~l~~~~g~tii~vTHd~~~a~~~~dri~vm~~G~iv~~G~~~el~~~P~~~~v 227 (232)
T d2awna2 171 IEISRLHKRLGRTMIYVTHDQVEAMTLADKIVVLDAGRVAQVGKPLELYHYPADRFV 227 (232)
T ss_dssp HHHHHHHHHSCCEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHHHSCSBHHH
T ss_pred HHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEeCHHHHHhCCCCHHH
Confidence 9998864 48999999999998877 999999999999999999999998776663
|
| >d3dhwc1 c.37.1.12 (C:1-240) Methionine import ATP-binding protein MetN {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Methionine import ATP-binding protein MetN species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=3.1e-39 Score=342.54 Aligned_cols=196 Identities=23% Similarity=0.370 Sum_probs=175.1
Q ss_pred EEEEEEEEEcCCCCceeeCCCCCCHHHHHHHHhhcccCCCceEEEcCeeCCCCChHH---HhhcCeeeccccccccc-cc
Q 037346 949 NIRHLQVRYAPNLPLVLRGRTGSGKSTLIQTLFRIVESTAGHILIDGKDISLIGLHD---LRTRLSIIPQDPTMFEG-TT 1024 (1156)
Q Consensus 949 ~~~~Vsf~Y~~~~~~vL~G~SGsGKSTL~~lL~rl~~p~~G~I~idG~di~~i~~~~---LR~~i~~VpQdp~LF~g-TI 1024 (1156)
.++||||...+++-++|.||||||||||+++|.|+.+|++|+|.+||.|+.+++.++ +|++||+|||+|.+|.. |+
T Consensus 20 al~~vsl~i~~Ge~~~iiG~sGsGKSTLl~~i~Gl~~p~sG~I~~~g~~i~~~~~~~~~~~rr~ig~VfQ~~~l~~~~tv 99 (240)
T d3dhwc1 20 ALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEGSVLVDGQELTTLSESELTKARRQIGMIFQHFNLLSSRTV 99 (240)
T ss_dssp EEEEEEEEECSSCEEEEEESTTSSHHHHHHHHTTSSCCSEEEEEETTEEECTTCHHHHHHHHHHEEECCSSCCCCTTSBH
T ss_pred EeeceeEEEcCCCEEEEECCCCCCHHHHHHHHcCCccccCCceEEcCeEeeeCChhhhhhhhccccccccccccCCCccH
Confidence 689999999999989999999999999999999999999999999999999988665 56789999999999976 99
Q ss_pred hhccCC-----CCCC--CHHHHHHHHHHcCCChHHHhhcCCcccc-------ccccccCCCEEEEecCCcCCCHHHHHHH
Q 037346 1025 RSNLDP-----LEEH--ADEQIWEALDKCQLGDEVRKKKGKLDSQ-------GRVLLKKSKVLVLDEATASVDTATDNQI 1090 (1156)
Q Consensus 1025 r~Nl~~-----~~~~--~deei~~al~~~~l~~~i~~lp~gl~s~-------ARALLr~~~ILiLDEaTS~LD~~te~~I 1090 (1156)
+||+.+ +-+. .++.+.++|+.+||.++....|..|.-+ ||||+.+|+||||||||++||+.+...|
T Consensus 100 ~eni~~~l~~~~~~~~~~~~~v~~~L~~vgL~~~~~~~~~~LSGG~~QRvaiAraL~~~P~lLllDEPt~~LD~~~~~~i 179 (240)
T d3dhwc1 100 FGNVALPLELDNTPKDEVKRRVTELLSLVGLGDKHDSYPSNLSGGQKQRVAIARALASNPKVLLCDEATSALDPATTRSI 179 (240)
T ss_dssp HHHHHHHHHTTTCCTTHHHHHHHHHHHHHSTTTTTSSCBSCCCHHHHHHHHHHHHHHTCCSEEEEESGGGSSCHHHHHHH
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHhhhhccCCCeEEeccccccCCHHHhhHH
Confidence 999853 1122 2467899999999999988888777644 8999999999999999999999999999
Q ss_pred HHHHHHhcC--CceEEEeecCcccccc-cCEEEEEeCcEEeeecChhHHhcCCCChH
Q 037346 1091 QQTLRQHFS--DCTVVTIAHRITSVLD-SAMVLLLNHGLIKEYDSPTKLLENKSSSF 1144 (1156)
Q Consensus 1091 ~~~l~~~~~--~~TvI~IaHrl~ti~~-~D~I~Vl~~G~IvE~G~~~eLl~~~~g~f 1144 (1156)
++.|+++.+ +.|||+|||+++.+.. ||||+||++|+|+|.|+|+|+++++...|
T Consensus 180 ~~~l~~l~~~~g~tvi~vTHdl~~~~~~~dri~vl~~G~iv~~G~~~ei~~~P~~~~ 236 (240)
T d3dhwc1 180 LELLKDINRRLGLTILLITHEMDVVKRICDCVAVISNGELIEQDTVSEVFSHPKTPL 236 (240)
T ss_dssp HHHHHHHHHHHCCEEEEEBSCHHHHHHHCSEEEEEETTEEEEEEETTTTTCSSCCTT
T ss_pred HHHHHHHHhccCCEEEEEcCCHHHHHHhCCEEEEEECCEEEEECCHHHHHhCCCChH
Confidence 999988643 7899999999999876 99999999999999999999998876555
|
| >d2onka1 c.37.1.12 (A:1-240) Molybdate/tungstate import ATP-binding protein WtpC (ModC) {Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Molybdate/tungstate import ATP-binding protein WtpC (ModC) species: Archaeoglobus fulgidus [TaxId: 2234]
Probab=100.00 E-value=6.8e-39 Score=338.32 Aligned_cols=200 Identities=23% Similarity=0.383 Sum_probs=175.7
Q ss_pred CeEEEEEEEEEEcCCCCceeeCCCCCCHHHHHHHHhhcccCCCceEEEcCeeCCCCChHHHhhcCeeeccccccccc-cc
Q 037346 946 GEVNIRHLQVRYAPNLPLVLRGRTGSGKSTLIQTLFRIVESTAGHILIDGKDISLIGLHDLRTRLSIIPQDPTMFEG-TT 1024 (1156)
Q Consensus 946 g~I~~~~Vsf~Y~~~~~~vL~G~SGsGKSTL~~lL~rl~~p~~G~I~idG~di~~i~~~~LR~~i~~VpQdp~LF~g-TI 1024 (1156)
|...+ ||+|... ++.++|.||||||||||+++|.|+++|++|+|.++|.|+.+++.. |++||+|||+|.||.. ||
T Consensus 12 g~~~~-~vs~~~~-~e~~~liGpnGaGKSTll~~i~Gl~~p~~G~I~~~G~~i~~~~~~--~r~ig~v~Q~~~l~~~ltV 87 (240)
T d2onka1 12 GNFRL-NVDFEMG-RDYCVLLGPTGAGKSVFLELIAGIVKPDRGEVRLNGADITPLPPE--RRGIGFVPQDYALFPHLSV 87 (240)
T ss_dssp TTEEE-EEEEEEC-SSEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCTT--TSCCBCCCSSCCCCTTSCH
T ss_pred CCEEE-EEEEEeC-CEEEEEECCCCChHHHHHHHHHcCCCCCceEEEECCEECCcCCHH--HcCceeeccchhhcccchh
Confidence 45556 7999985 456789999999999999999999999999999999999998865 7899999999999975 99
Q ss_pred hhccCCCC-CCC----HHHHHHHHHHcCCChHHHhhcCCcccc-------ccccccCCCEEEEecCCcCCCHHHHHHHHH
Q 037346 1025 RSNLDPLE-EHA----DEQIWEALDKCQLGDEVRKKKGKLDSQ-------GRVLLKKSKVLVLDEATASVDTATDNQIQQ 1092 (1156)
Q Consensus 1025 r~Nl~~~~-~~~----deei~~al~~~~l~~~i~~lp~gl~s~-------ARALLr~~~ILiLDEaTS~LD~~te~~I~~ 1092 (1156)
+||+.++- ..+ ++.+.++++.+++.++....|..|.-+ ||||+.+|+|||||||||+||+.+...|++
T Consensus 88 ~enl~~~l~~~~~~~~~~~v~~~l~~~gl~~~~~~~~~~LSGG~kQRvaiAral~~~P~illlDEPts~LD~~~~~~i~~ 167 (240)
T d2onka1 88 YRNIAYGLRNVERVERDRRVREMAEKLGIAHLLDRKPARLSGGERQRVALARALVIQPRLLLLDEPLSAVDLKTKGVLME 167 (240)
T ss_dssp HHHHHTTCTTSCHHHHHHHHHHHHHTTTCTTTTTCCGGGSCHHHHHHHHHHHHHTTCCSSBEEESTTSSCCHHHHHHHHH
T ss_pred hHhhhhhhcccCHHHHHHHHHHHHHhcCcHhhhhCChhhCCHHHHHHHHHHHHHhccCCceEecCccccCCHHHHHHHHH
Confidence 99997642 222 356899999999999998888888754 999999999999999999999999999999
Q ss_pred HHHHhcC--CceEEEeecCcccccc-cCEEEEEeCcEEeeecChhHHhcCCCChHHHHHH
Q 037346 1093 TLRQHFS--DCTVVTIAHRITSVLD-SAMVLLLNHGLIKEYDSPTKLLENKSSSFAQLVA 1149 (1156)
Q Consensus 1093 ~l~~~~~--~~TvI~IaHrl~ti~~-~D~I~Vl~~G~IvE~G~~~eLl~~~~g~f~~l~~ 1149 (1156)
.|+++.+ +.|+|+|||+++.+.. ||||+||++|+|++.|+|+|+++.++...++++.
T Consensus 168 ~i~~l~~~~g~tvi~vtHd~~~~~~~adri~vm~~G~ii~~G~~~el~~~~~~~v~~fl~ 227 (240)
T d2onka1 168 ELRFVQREFDVPILHVTHDLIEAAMLADEVAVMLNGRIVEKGKLKELFSAKNGEVAEFLS 227 (240)
T ss_dssp HHHHHHHHHTCCEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHHHSCCSSHHHHGG
T ss_pred HHHHHHHhcCCeEEEEeCCHHHHHHhCCEEEEEECCEEEEEecHHHHhcCCCHHHHHHhC
Confidence 9988743 8899999999998876 9999999999999999999999887776666543
|
| >d1oxxk2 c.37.1.12 (K:1-242) Glucose transport protein GlcV, N-terminal domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Glucose transport protein GlcV, N-terminal domain species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Probab=100.00 E-value=3.2e-39 Score=341.81 Aligned_cols=198 Identities=16% Similarity=0.280 Sum_probs=174.2
Q ss_pred EEEEEEEEEEcCCCCceeeCCCCCCHHHHHHHHhhcccCCCceEEEcCeeCCCCC---hHHHhhcCeeeccccccccc-c
Q 037346 948 VNIRHLQVRYAPNLPLVLRGRTGSGKSTLIQTLFRIVESTAGHILIDGKDISLIG---LHDLRTRLSIIPQDPTMFEG-T 1023 (1156)
Q Consensus 948 I~~~~Vsf~Y~~~~~~vL~G~SGsGKSTL~~lL~rl~~p~~G~I~idG~di~~i~---~~~LR~~i~~VpQdp~LF~g-T 1023 (1156)
..++||||..++++.++|.||||||||||+++|.|+++|++|+|++||.|+...+ ....|++||+|||+|.||.. |
T Consensus 19 ~aL~~vsl~i~~Ge~~~iiG~sGsGKSTll~~i~gl~~p~~G~I~~~g~~i~~~~~~~~~~~rr~ig~vfQ~~~L~p~lt 98 (242)
T d1oxxk2 19 VALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPSTGELYFDDRLVASNGKLIVPPEDRKIGMVFQTWALYPNLT 98 (242)
T ss_dssp EEEEEEEEEECTTCEEEEECSCHHHHHHHHHHHHTSSCCSEEEEEETTEEEEETTEESSCGGGSCEEEEETTSCCCTTSC
T ss_pred EEEeceEEEECCCCEEEEECCCCCcHHHHHHHHHcCcCCCCceEEECCEEeecCchhhcchhhccceEEecccccccccc
Confidence 4588888888888888899999999999999999999999999999999998766 45568889999999999976 9
Q ss_pred chhccCCC---CCCC----HHHHHHHHHHcCCChHHHhhcCCcccc-------ccccccCCCEEEEecCCcCCCHHHHHH
Q 037346 1024 TRSNLDPL---EEHA----DEQIWEALDKCQLGDEVRKKKGKLDSQ-------GRVLLKKSKVLVLDEATASVDTATDNQ 1089 (1156)
Q Consensus 1024 Ir~Nl~~~---~~~~----deei~~al~~~~l~~~i~~lp~gl~s~-------ARALLr~~~ILiLDEaTS~LD~~te~~ 1089 (1156)
++|||.++ ...+ ++.+.++++.+++.++....|..|.-+ ||||+.+|+|||||||||+||+.+...
T Consensus 99 v~eni~~~l~~~~~~~~~~~~~v~~~l~~~gL~~~~~~~p~~LSGGqkQRvaiARaL~~~P~llllDEPt~~LD~~~~~~ 178 (242)
T d1oxxk2 99 AFENIAFPLTNMKMSKEEIRKRVEEVAKILDIHHVLNHFPRELSGAQQQRVALARALVKDPSLLLLDEPFSNLDARMRDS 178 (242)
T ss_dssp HHHHHHGGGTTSSCCHHHHHHHHHHHHHHTTCGGGTTSCGGGSCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCGGGHHH
T ss_pred HHHHhhhhhHhhcCCHHHHHHHHHHHHhhcChHhhhhCChhhCCHHHHhHHHHHhHHhhcccceeecCCccCCCHHHHHH
Confidence 99999642 1223 356899999999999888888877644 999999999999999999999999999
Q ss_pred HHHHHHHhcC--CceEEEeecCcccccc-cCEEEEEeCcEEeeecChhHHhcCCCChHH
Q 037346 1090 IQQTLRQHFS--DCTVVTIAHRITSVLD-SAMVLLLNHGLIKEYDSPTKLLENKSSSFA 1145 (1156)
Q Consensus 1090 I~~~l~~~~~--~~TvI~IaHrl~ti~~-~D~I~Vl~~G~IvE~G~~~eLl~~~~g~f~ 1145 (1156)
|++.|+++.+ +.|+|+|||+++.+.. ||||+||++|+|+|.|+|+|+++++...|-
T Consensus 179 i~~~i~~l~~~~g~tvi~vTHd~~~~~~~~dri~vm~~G~iv~~g~~~el~~~P~~~~~ 237 (242)
T d1oxxk2 179 ARALVKEVQSRLGVTLLVVSHDPADIFAIADRVGVLVKGKLVQVGKPEDLYDNPVSIQV 237 (242)
T ss_dssp HHHHHHHHHHHHCCEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHHHSCSSHHH
T ss_pred HHHHHHHHHhccCCEEEEEECCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhCCCCHHH
Confidence 9999988643 8899999999998755 999999999999999999999998776653
|
| >d1g2912 c.37.1.12 (1:1-240) Maltose transport protein MalK, N-terminal domain {Archaeon Thermococcus litoralis [TaxId: 2265]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Maltose transport protein MalK, N-terminal domain species: Archaeon Thermococcus litoralis [TaxId: 2265]
Probab=100.00 E-value=5.5e-39 Score=340.58 Aligned_cols=199 Identities=18% Similarity=0.343 Sum_probs=174.4
Q ss_pred eEEEEEEEEEEcCCCCceeeCCCCCCHHHHHHHHhhcccCCCceEEEcCeeCCCCChHH----HhhcCeeeccccccccc
Q 037346 947 EVNIRHLQVRYAPNLPLVLRGRTGSGKSTLIQTLFRIVESTAGHILIDGKDISLIGLHD----LRTRLSIIPQDPTMFEG 1022 (1156)
Q Consensus 947 ~I~~~~Vsf~Y~~~~~~vL~G~SGsGKSTL~~lL~rl~~p~~G~I~idG~di~~i~~~~----LR~~i~~VpQdp~LF~g 1022 (1156)
...++||||..++++-++|.||||||||||+++|.|+++|++|+|.+||.|+.+.+... .|++||+|||+|.||..
T Consensus 16 ~~al~~vsl~i~~Ge~~~liG~sGaGKSTll~~i~gl~~p~sG~I~~~g~~i~~~~~~~~~~~~~r~ig~v~Q~~~L~~~ 95 (240)
T d1g2912 16 VTAVREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEEPSRGQIYIGDKLVADPEKGIFVPPKDRDIAMVFQSYALYPH 95 (240)
T ss_dssp EEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEEEEEGGGTEECCGGGSSEEEECSCCCCCTT
T ss_pred EEEEcceeeEEcCCCEEEEECCCCChHHHHHHHHhcCCCCCCCEEEECCEEecccchhhhcccccccceecccchhhcch
Confidence 34678888888888888999999999999999999999999999999999998876544 37789999999999976
Q ss_pred -cchhccCCC---CCCC----HHHHHHHHHHcCCChHHHhhcCCcccc-------ccccccCCCEEEEecCCcCCCHHHH
Q 037346 1023 -TTRSNLDPL---EEHA----DEQIWEALDKCQLGDEVRKKKGKLDSQ-------GRVLLKKSKVLVLDEATASVDTATD 1087 (1156)
Q Consensus 1023 -TIr~Nl~~~---~~~~----deei~~al~~~~l~~~i~~lp~gl~s~-------ARALLr~~~ILiLDEaTS~LD~~te 1087 (1156)
||+||+.++ ...+ ++.+.++++.+++.++....|..|.-+ ||||+.+|+||||||||++||+.+.
T Consensus 96 ltV~eni~~~~~~~~~~~~e~~~~v~~~l~~~~l~~~~~~~p~~LSGGqkQRv~IAraL~~~P~iLllDEPt~~LD~~~~ 175 (240)
T d1g2912 96 MTVYDNIAFPLKLRKVPRQEIDQRVREVAELLGLTELLNRKPRELSGGQRQRVALGRAIVRKPQVFLMDEPLSNLDAKLR 175 (240)
T ss_dssp SCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHTCGGGTTCCGGGSCHHHHHHHHHHHHHHTCCSEEEEECTTTTSCHHHH
T ss_pred hhhhHhhhhhHHHcCCCHHHHHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHhcCCCEEEecCCCcccCHHHH
Confidence 999999642 1223 355899999999999888888777644 8999999999999999999999999
Q ss_pred HHHHHHHHHhcC--CceEEEeecCcccccc-cCEEEEEeCcEEeeecChhHHhcCCCChHH
Q 037346 1088 NQIQQTLRQHFS--DCTVVTIAHRITSVLD-SAMVLLLNHGLIKEYDSPTKLLENKSSSFA 1145 (1156)
Q Consensus 1088 ~~I~~~l~~~~~--~~TvI~IaHrl~ti~~-~D~I~Vl~~G~IvE~G~~~eLl~~~~g~f~ 1145 (1156)
..|++.|+++.+ +.|+|+|||+++.+.. ||||+||++|+|+|.|+|+|++.++...|-
T Consensus 176 ~~i~~~l~~l~~~~g~tvi~vTHd~~~~~~~~drv~vm~~G~iv~~G~~~el~~~P~~~~~ 236 (240)
T d1g2912 176 VRMRAELKKLQRQLGVTTIYVTHDQVEAMTMGDRIAVMNRGVLQQVGSPDEVYDKPANTFV 236 (240)
T ss_dssp HHHHHHHHHHHHHHTCEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHHHSCSBHHH
T ss_pred HHHHHHHHHHHhccCCEEEEEcCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhCCCCHHH
Confidence 999999988642 8999999999999876 999999999999999999999998776653
|
| >d1l7vc_ c.37.1.12 (C:) ABC transporter involved in vitamin B12 uptake, BtuD {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: ABC transporter involved in vitamin B12 uptake, BtuD species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=1.9e-38 Score=338.73 Aligned_cols=194 Identities=24% Similarity=0.365 Sum_probs=166.4
Q ss_pred cEEEeeeEEEeCCCCCCCccccceEEeeCCeEEEEEcCCCCChHHHHHHHhCCCCCCCcEEEEcCe-------------E
Q 037346 357 AIEIIDGSFSWDFSSPNPTLRNINLKVFHGMRVAVCGTVGSGKSSCLSCILGGVPKESGIIRLCGT-------------K 423 (1156)
Q Consensus 357 ~i~~~~~~f~~~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKSTll~~i~g~~~~~~G~i~~~g~-------------~ 423 (1156)
.++++|++++ ..|+||||+|++||+++|+||||||||||+++|+|+. |++|+|.++|+ .
T Consensus 3 il~~~dv~~~-------~~l~~isl~I~~Gei~~iiG~nGaGKSTLl~~l~Gl~-~~~G~I~~~g~~i~~~~~~~~~~~~ 74 (231)
T d1l7vc_ 3 VMQLQDVAES-------TRLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMT-SGKGSIQFAGQPLEAWSATKLALHR 74 (231)
T ss_dssp EEEEEEECCT-------TTSCSEEEEEETTCEEECBCCTTSSHHHHHHHHHTSC-CCSSEEEESSSBGGGSCHHHHHHHE
T ss_pred EEEEECcccC-------ceecCEEEEEcCCCEEEEECCCCCcHHHHHHHHhCCC-CCceEEEECCEECCcCCHHHHHhhc
Confidence 4789998654 3699999999999999999999999999999999976 58999999984 5
Q ss_pred EEEecCCcC-CCccHHHHhhcCCC--CCHHHHHHHHHHhCCchhhhhCCCCCccccccCCCCCCHHHHHHHHHHHhhcc-
Q 037346 424 AYVAQSPWI-QSGKIEENILFGKE--MDRERYERVLEACSLKKDLEVLPFGDQTIIGERGINLSGGQKQRIQIARPLYQ- 499 (1156)
Q Consensus 424 ~~v~Q~~~~-~~~ti~eni~~~~~--~~~~~~~~~~~~~~l~~~~~~~~~g~~t~v~~~g~~LSgGqkqRi~lAral~~- 499 (1156)
+|++|+... +..++.+++.++.. ...++.+++++.+++.+.+ +++..+||||||||++|||||++
T Consensus 75 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-----------~~~~~~LSgG~~Qrv~iA~al~~~ 143 (231)
T d1l7vc_ 75 AYLSQQQTPPFATPVWHYLTLHQHDKTRTELLNDVAGALALDDKL-----------GRSTNQLSGGEWQRVRLAAVVLQI 143 (231)
T ss_dssp EEECSCCCCCSSCBHHHHHHHHCSCTTCHHHHHHHHHHTTCTTTT-----------TSBGGGCCHHHHHHHHHHHHHHHH
T ss_pred eeeeccccCCccccHHHHhhhccchhhHHHHHHHHHHhcCCHhHh-----------CcChhhcCHHHHHHHHHHHHHHhh
Confidence 899998764 56789999987653 3466778888888876543 35567899999999999999997
Q ss_pred ------CCCeeeeeCCCCCcCHHHHHHHHHHHHh--cCCCEEEEEccCCCccc-cCCEEEEEeCCeEEEccChHHHHhc
Q 037346 500 ------DADIFLLDDPFSPVDDHTGAHLFKFCWV--SSSKTVIYATHQVEFLP-AADLILVIKDGKITQAGKYSDILNS 569 (1156)
Q Consensus 500 ------~~~illlDep~s~lD~~~~~~i~~~~~~--~~~~tvi~vtH~~~~~~-~~d~i~~l~~G~i~~~g~~~~l~~~ 569 (1156)
+|+|+||||||++||+..+..+.+.+.. .+|+|+|++||+++.+. .||+|++|++|++++.|+++|+++.
T Consensus 144 ~p~~~p~p~llllDEPt~gLD~~~~~~i~~~i~~l~~~g~tii~vtHdl~~~~~~~dri~vl~~G~iv~~G~~~ev~~~ 222 (231)
T d1l7vc_ 144 TPQANPAGQLLLLDEPMNSLDVAQQSALDKILSALCQQGLAIVMSSHDLNHTLRHAHRAWLLKGGKMLASGRREEVLTP 222 (231)
T ss_dssp CTTTCTTCCEEEESSCSTTCCHHHHHHHHHHHHHHHHTTCEEEECCCCHHHHHHHCSBCCBEETTEECCCSBHHHHSCH
T ss_pred CcccCCCCCEEEEcCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHHCCEEEEEECCEEEEECCHHHHhCC
Confidence 7799999999999999999888765533 57999999999998864 6999999999999999999999753
|
| >d1l2ta_ c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: MJ0796 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=100.00 E-value=7.5e-38 Score=330.14 Aligned_cols=185 Identities=20% Similarity=0.313 Sum_probs=162.5
Q ss_pred EEEEEEEEEcCCCCceeeCCCCCCHHHHHHHHhhcccCCCceEEEcCeeCCCCChHHH----hhcCeeeccccccccc-c
Q 037346 949 NIRHLQVRYAPNLPLVLRGRTGSGKSTLIQTLFRIVESTAGHILIDGKDISLIGLHDL----RTRLSIIPQDPTMFEG-T 1023 (1156)
Q Consensus 949 ~~~~Vsf~Y~~~~~~vL~G~SGsGKSTL~~lL~rl~~p~~G~I~idG~di~~i~~~~L----R~~i~~VpQdp~LF~g-T 1023 (1156)
.++||||..++++-++|.||||||||||+++|.|+++|++|+|++||.|+..++.+++ |++||+|||+|.||.. |
T Consensus 20 al~~isl~i~~Ge~~~iiG~sGsGKSTLl~~i~gl~~p~sG~I~~~g~~i~~~~~~~~~~~r~~~ig~v~Q~~~l~~~~t 99 (230)
T d1l2ta_ 20 ALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPTEGEVYIDNIKTNDLDDDELTKIRRDKIGFVFQQFNLIPLLT 99 (230)
T ss_dssp EEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHHHHHHEEEECTTCCCCTTSC
T ss_pred EEeceEEEEcCCCEEEEECCCCCCcchhhHhccCCCCCCcceeEECCEEcCcCChhhcchhhcceEEEEecchhhCcCcc
Confidence 6899999999999899999999999999999999999999999999999999998776 3579999999999865 9
Q ss_pred chhccCCC------CCCC----HHHHHHHHHHcCCCh-HHHhhcCCcccc-------ccccccCCCEEEEecCCcCCCHH
Q 037346 1024 TRSNLDPL------EEHA----DEQIWEALDKCQLGD-EVRKKKGKLDSQ-------GRVLLKKSKVLVLDEATASVDTA 1085 (1156)
Q Consensus 1024 Ir~Nl~~~------~~~~----deei~~al~~~~l~~-~i~~lp~gl~s~-------ARALLr~~~ILiLDEaTS~LD~~ 1085 (1156)
|+||+.+. ...+ .+++.+.|+.++|.+ +....|..|.-+ ||||+.+|+|||||||||+||+.
T Consensus 100 v~eni~~~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~p~~LSGGqkQRvaIAraL~~~P~lLllDEPTs~LD~~ 179 (230)
T d1l2ta_ 100 ALENVELPLIFKYRGAMSGEERRKRALECLKMAELEERFANHKPNQLSGGQQQRVAIARALANNPPIILADQPTGALDSK 179 (230)
T ss_dssp HHHHHHHHHHTCCSSCCCHHHHHHHHHHHHHHTTCCGGGTTCCGGGSCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCHH
T ss_pred HHHHHhHHHHHhccCCCCHHHHHHHHHHHHHhhchhhhhhcCChhhCCHHHHHHHHHHhhhhcCCCEEEecCCccccCHH
Confidence 99997531 1223 245778999999976 445567766544 89999999999999999999999
Q ss_pred HHHHHHHHHHHhc--CCceEEEeecCcccccccCEEEEEeCcEEeeecCh
Q 037346 1086 TDNQIQQTLRQHF--SDCTVVTIAHRITSVLDSAMVLLLNHGLIKEYDSP 1133 (1156)
Q Consensus 1086 te~~I~~~l~~~~--~~~TvI~IaHrl~ti~~~D~I~Vl~~G~IvE~G~~ 1133 (1156)
+.+.|++.|+++. .++|+|+|||+++.+..||||++|++|+|+|.|++
T Consensus 180 ~~~~i~~~l~~l~~~~g~tii~vTHd~~~a~~~drv~~m~~G~Iv~~g~~ 229 (230)
T d1l2ta_ 180 TGEKIMQLLKKLNEEDGKTVVVVTHDINVARFGERIIYLKDGEVEREEKL 229 (230)
T ss_dssp HHHHHHHHHHHHHHTTCCEEEEECSCHHHHTTSSEEEEEETTEEEEEEEC
T ss_pred HHHHHHHHHHHHHHhhCCEEEEECCCHHHHHhCCEEEEEECCEEEEeccC
Confidence 9999999999874 37899999999999889999999999999999975
|
| >d1sgwa_ c.37.1.12 (A:) Putative ABC transporter PF0895 {Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative ABC transporter PF0895 species: Pyrococcus furiosus [TaxId: 2261]
Probab=100.00 E-value=1e-36 Score=318.23 Aligned_cols=179 Identities=23% Similarity=0.353 Sum_probs=147.6
Q ss_pred cEEEeeeEEEeCCCCCCCccccceEEeeCCeEEEEEcCCCCChHHHHHHHhCCCCCCCcEEEEcC--------eEEEEec
Q 037346 357 AIEIIDGSFSWDFSSPNPTLRNINLKVFHGMRVAVCGTVGSGKSSCLSCILGGVPKESGIIRLCG--------TKAYVAQ 428 (1156)
Q Consensus 357 ~i~~~~~~f~~~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKSTll~~i~g~~~~~~G~i~~~g--------~~~~v~Q 428 (1156)
.|+++|++|+|+ +++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++| +++|+||
T Consensus 2 ~lev~~ls~~y~----~~vl~~is~~i~~Gei~~l~G~NGsGKSTLl~~i~gl~~p~~G~I~~~g~~i~~~~~~i~~~~~ 77 (200)
T d1sgwa_ 2 KLEIRDLSVGYD----KPVLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKPLKGEIIYNGVPITKVKGKIFFLPE 77 (200)
T ss_dssp EEEEEEEEEESS----SEEEEEEEEEEETTCCEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEEGGGGGGGEEEECS
T ss_pred eEEEEEEEEEeC----CeEEeceEEEEcCCCEEEEECCCCChHHHHHHHHhcccccCCCEEEECCEehhHhcCcEEEEee
Confidence 489999999994 3699999999999999999999999999999999999999999999998 4799999
Q ss_pred CCcCCC-ccHHHHhhc-----CCCCCHHHHHHHHHHhCCchhhhhCCCCCccccccCCCCCCHHHHHHHHHHHhhccCCC
Q 037346 429 SPWIQS-GKIEENILF-----GKEMDRERYERVLEACSLKKDLEVLPFGDQTIIGERGINLSGGQKQRIQIARPLYQDAD 502 (1156)
Q Consensus 429 ~~~~~~-~ti~eni~~-----~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~t~v~~~g~~LSgGqkqRi~lAral~~~~~ 502 (1156)
++.++. .|++||+.+ +...++++..+.++..++.+ + .++..+||||||||++||||++++|+
T Consensus 78 ~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~-~-----------~~~~~~LSgG~~qrv~ia~al~~~~~ 145 (200)
T d1sgwa_ 78 EIIVPRKISVEDYLKAVASLYGVKVNKNEIMDALESVEVLD-L-----------KKKLGELSQGTIRRVQLASTLLVNAE 145 (200)
T ss_dssp SCCCCTTSBHHHHHHHHHHHTTCCCCHHHHHHHHHHTTCCC-T-----------TSBGGGSCHHHHHHHHHHHHTTSCCS
T ss_pred cccCCCCcCHHHHHHHHHHhcCCccCHHHHHHHHHHcCCcc-c-----------ccccCcCCCcHHHHHHHHHHHhcCCC
Confidence 998875 499999864 55566777777777665532 1 13345799999999999999999999
Q ss_pred eeeeeCCCCCcCHHHHHHHHHHHHh---cCCCEEEEEccCCCccccCCEEEEEeC
Q 037346 503 IFLLDDPFSPVDDHTGAHLFKFCWV---SSSKTVIYATHQVEFLPAADLILVIKD 554 (1156)
Q Consensus 503 illlDep~s~lD~~~~~~i~~~~~~---~~~~tvi~vtH~~~~~~~~d~i~~l~~ 554 (1156)
++||||||++||+.++..+++.+.. .++.++|.++|+ +..||++.+|++
T Consensus 146 llllDEPt~gLD~~~~~~i~~~l~~~~~~~~~~ii~~~~~---l~~~D~~~~l~~ 197 (200)
T d1sgwa_ 146 IYVLDDPVVAIDEDSKHKVLKSILEILKEKGIVIISSREE---LSYCDVNENLHK 197 (200)
T ss_dssp EEEEESTTTTSCTTTHHHHHHHHHHHHHHHSEEEEEESSC---CTTSSEEEEGGG
T ss_pred EEEEcCcccccCHHHHHHHHHHHHHHHhCCCEEEEEEech---hhhcchhhheee
Confidence 9999999999999999988876644 234344444444 456999988753
|
| >d1b0ua_ c.37.1.12 (A:) ATP-binding subunit of the histidine permease {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: ATP-binding subunit of the histidine permease species: Salmonella typhimurium [TaxId: 90371]
Probab=100.00 E-value=8.8e-37 Score=329.37 Aligned_cols=202 Identities=23% Similarity=0.356 Sum_probs=173.2
Q ss_pred eEEEEEEEEEEcCCCCceeeCCCCCCHHHHHHHHhhcccCCCceEEEcCeeCCCCCh-------------HHHhhcCeee
Q 037346 947 EVNIRHLQVRYAPNLPLVLRGRTGSGKSTLIQTLFRIVESTAGHILIDGKDISLIGL-------------HDLRTRLSII 1013 (1156)
Q Consensus 947 ~I~~~~Vsf~Y~~~~~~vL~G~SGsGKSTL~~lL~rl~~p~~G~I~idG~di~~i~~-------------~~LR~~i~~V 1013 (1156)
.-.++||||..++++-++|.|+||||||||+++|.|+++|++|+|.+||.|+...+. ..+|++||+|
T Consensus 15 ~~al~~vs~~i~~GEi~~iiG~sGsGKSTLl~~i~Gl~~p~~G~I~~~G~~i~~~~~~~~~~~~~~~~~~~~~r~~ig~v 94 (258)
T d1b0ua_ 15 HEVLKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEKPSEGAIIVNGQNINLVRDKDGQLKVADKNQLRLLRTRLTMV 94 (258)
T ss_dssp EEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEECCEEECTTSSEEESCHHHHHHHHHHEEEE
T ss_pred EEEEcceeeEEcCCCEEEEECCCCCcHHHHHHHHHcCccCCCCCEEECCEEeccCCccchhcccccHhHHHHHhcceEEE
Confidence 346788888888899889999999999999999999999999999999999976543 4578899999
Q ss_pred ccccccccc-cchhccCCC----CCCC----HHHHHHHHHHcCCChHHH-hhcCCcccc-------ccccccCCCEEEEe
Q 037346 1014 PQDPTMFEG-TTRSNLDPL----EEHA----DEQIWEALDKCQLGDEVR-KKKGKLDSQ-------GRVLLKKSKVLVLD 1076 (1156)
Q Consensus 1014 pQdp~LF~g-TIr~Nl~~~----~~~~----deei~~al~~~~l~~~i~-~lp~gl~s~-------ARALLr~~~ILiLD 1076 (1156)
||+|.+|.. |+++|+..+ ...+ ++.+.++++.+++.+... ..|..|.-+ ||||+.+|+|||||
T Consensus 95 fQ~~~l~~~~tv~env~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~p~~LSGG~~QRv~iAraL~~~P~llilD 174 (258)
T d1b0ua_ 95 FQHFNLWSHMTVLENVMEAPIQVLGLSKHDARERALKYLAKVGIDERAQGKYPVHLSGGQQQRVSIARALAMEPDVLLFD 174 (258)
T ss_dssp CSSCCCCTTSCHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTCCHHHHTSCGGGSCHHHHHHHHHHHHHHTCCSEEEEE
T ss_pred EechhhccchhcchhhhhhHHHhcCCCHHHHHHHHHHHHHHcCCchhhhccCcccccHHHHHHHHHHHHHhcCCCEEEec
Confidence 999999975 999998532 1222 356889999999988664 456666533 89999999999999
Q ss_pred cCCcCCCHHHHHHHHHHHHHhc-CCceEEEeecCcccccc-cCEEEEEeCcEEeeecChhHHhcCCCChHH-HHH
Q 037346 1077 EATASVDTATDNQIQQTLRQHF-SDCTVVTIAHRITSVLD-SAMVLLLNHGLIKEYDSPTKLLENKSSSFA-QLV 1148 (1156)
Q Consensus 1077 EaTS~LD~~te~~I~~~l~~~~-~~~TvI~IaHrl~ti~~-~D~I~Vl~~G~IvE~G~~~eLl~~~~g~f~-~l~ 1148 (1156)
|||++||+.+.+.|.+.|+++. +++|+|+|||+++.+.. ||||+||++|+|+|.|+|+|+++++...|- +++
T Consensus 175 EPT~gLD~~~~~~i~~ll~~l~~~g~til~vtHdl~~~~~~adri~vm~~G~iv~~g~~~ev~~~P~~~~~~~ll 249 (258)
T d1b0ua_ 175 EPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHEMGFARHVSSHVIFLHQGKIEEEGDPEQVFGNPQSPRLQQFL 249 (258)
T ss_dssp STTTTSCHHHHHHHHHHHHHHHHTTCCEEEECSCHHHHHHHCSEEEEEETTEEEEEECHHHHHHSCCSHHHHHHH
T ss_pred cccccCCHHHHHHHHHhhhhhcccCCceEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhCCCCHHHHHHH
Confidence 9999999999999999998764 47899999999999876 999999999999999999999998776654 444
|
| >d1vpla_ c.37.1.12 (A:) Putative ABC transporter TM0544 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative ABC transporter TM0544 species: Thermotoga maritima [TaxId: 2336]
Probab=100.00 E-value=7.3e-36 Score=318.65 Aligned_cols=193 Identities=19% Similarity=0.342 Sum_probs=167.6
Q ss_pred eEEEEEEEEEEcCCCCceeeCCCCCCHHHHHHHHhhcccCCCceEEEcCeeCCCCChHHHhhcCeeeccccccccc-cch
Q 037346 947 EVNIRHLQVRYAPNLPLVLRGRTGSGKSTLIQTLFRIVESTAGHILIDGKDISLIGLHDLRTRLSIIPQDPTMFEG-TTR 1025 (1156)
Q Consensus 947 ~I~~~~Vsf~Y~~~~~~vL~G~SGsGKSTL~~lL~rl~~p~~G~I~idG~di~~i~~~~LR~~i~~VpQdp~LF~g-TIr 1025 (1156)
.-.++||||...+++-++|.||||||||||+++|+|+++|++|+|.++|.|+.+. .+.+|+++++|||++.+|.. |++
T Consensus 15 ~~vl~~vs~~v~~Gei~glvG~nGaGKSTLl~~l~G~~~p~~G~i~i~G~~i~~~-~~~~~~~i~~vpq~~~~~~~ltv~ 93 (238)
T d1vpla_ 15 KEILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPSSGIVTVFGKNVVEE-PHEVRKLISYLPEEAGAYRNMQGI 93 (238)
T ss_dssp EEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEETTTC-HHHHHTTEEEECTTCCCCTTSBHH
T ss_pred EEEEccceeEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCCEEEECcEecccC-hHHHHhhEeEeeeccccCCCccHH
Confidence 3466777777778888889999999999999999999999999999999999884 56889999999999999876 999
Q ss_pred hccCCCC---CCC----HHHHHHHHHHcCCChHHHhhcCCcccc-------ccccccCCCEEEEecCCcCCCHHHHHHHH
Q 037346 1026 SNLDPLE---EHA----DEQIWEALDKCQLGDEVRKKKGKLDSQ-------GRVLLKKSKVLVLDEATASVDTATDNQIQ 1091 (1156)
Q Consensus 1026 ~Nl~~~~---~~~----deei~~al~~~~l~~~i~~lp~gl~s~-------ARALLr~~~ILiLDEaTS~LD~~te~~I~ 1091 (1156)
||+.+.. ..+ ++.+.++++.+++.+.....+..|..+ ||||+.+|+||||||||++||+.+.+.|.
T Consensus 94 e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~lSgG~~qrv~iA~al~~~p~illLDEPt~gLD~~~~~~i~ 173 (238)
T d1vpla_ 94 EYLRFVAGFYASSSSEIEEMVERATEIAGLGEKIKDRVSTYSKGMVRKLLIARALMVNPRLAILDEPTSGLDVLNAREVR 173 (238)
T ss_dssp HHHHHHHHHHCCCHHHHHHHHHHHHHHHCCGGGGGSBGGGCCHHHHHHHHHHHHHTTCCSEEEEESTTTTCCHHHHHHHH
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHhCCCHHHHhhhhhhCCHHHHHHHHHHHHHhcCCCEEEecCCCCCCCHHHHHHHH
Confidence 9985421 122 345778888999998887777766544 89999999999999999999999999999
Q ss_pred HHHHHhc-CCceEEEeecCcccccc-cCEEEEEeCcEEeeecChhHHhcCC
Q 037346 1092 QTLRQHF-SDCTVVTIAHRITSVLD-SAMVLLLNHGLIKEYDSPTKLLENK 1140 (1156)
Q Consensus 1092 ~~l~~~~-~~~TvI~IaHrl~ti~~-~D~I~Vl~~G~IvE~G~~~eLl~~~ 1140 (1156)
+.|++.. +|+|||++||+++.+.. ||||+||++|+|++.|+|+||.++.
T Consensus 174 ~~i~~~~~~g~tii~~tH~l~~~~~~~drv~vl~~G~iv~~g~~~el~~~~ 224 (238)
T d1vpla_ 174 KILKQASQEGLTILVSSHNMLEVEFLCDRIALIHNGTIVETGTVEELKERY 224 (238)
T ss_dssp HHHHHHHHTTCEEEEEECCHHHHTTTCSEEEEEETTEEEEEEEHHHHHHHT
T ss_pred HHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhcc
Confidence 9998864 57899999999999886 9999999999999999999998653
|
| >d1g6ha_ c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: MJ1267 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=100.00 E-value=1.1e-35 Score=321.65 Aligned_cols=192 Identities=23% Similarity=0.299 Sum_probs=165.5
Q ss_pred eEEEEEEEEEEcCCCCceeeCCCCCCHHHHHHHHhhcccCCCceEEEcCeeCCCCChHHHhhc-Ceeeccccccccc-cc
Q 037346 947 EVNIRHLQVRYAPNLPLVLRGRTGSGKSTLIQTLFRIVESTAGHILIDGKDISLIGLHDLRTR-LSIIPQDPTMFEG-TT 1024 (1156)
Q Consensus 947 ~I~~~~Vsf~Y~~~~~~vL~G~SGsGKSTL~~lL~rl~~p~~G~I~idG~di~~i~~~~LR~~-i~~VpQdp~LF~g-TI 1024 (1156)
.-.++||||..++++-++|.||||||||||+++|+|+++|++|+|+++|.|+...+..++++. |++|||+|.+|.. |+
T Consensus 17 ~~aL~~vs~~v~~Gei~~liG~nGaGKSTLl~~i~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~gi~~v~Q~~~~~~~ltv 96 (254)
T d1g6ha_ 17 FKALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVYFENKDITNKEPAELYHYGIVRTFQTPQPLKEMTV 96 (254)
T ss_dssp EEEEEEECCEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHHTEEECCCCCGGGGGSBH
T ss_pred eEEEcceEEEECCCCEEEEECCCCCcHHHHHHHHHCCCcCCCcEEEECCEeccchhHHHHHHhcCCccCCccccCCCCee
Confidence 346788888888888889999999999999999999999999999999999999999987665 9999999998865 99
Q ss_pred hhccCCCC-----------------CCC---HHHHHHHHHHcCCChHHHhhcCCcccc-------ccccccCCCEEEEec
Q 037346 1025 RSNLDPLE-----------------EHA---DEQIWEALDKCQLGDEVRKKKGKLDSQ-------GRVLLKKSKVLVLDE 1077 (1156)
Q Consensus 1025 r~Nl~~~~-----------------~~~---deei~~al~~~~l~~~i~~lp~gl~s~-------ARALLr~~~ILiLDE 1077 (1156)
+||+..+. ... .+++.++++..++.+.....+..|.-+ ||||+.+|++|||||
T Consensus 97 ~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~Qrv~iAraL~~~P~llilDE 176 (254)
T d1g6ha_ 97 LENLLIGEICPGESPLNSLFYKKWIPKEEEMVEKAFKILEFLKLSHLYDRKAGELSGGQMKLVEIGRALMTNPKMIVMDE 176 (254)
T ss_dssp HHHHHGGGTSTTSCHHHHHHHCSSCCCCHHHHHHHHHHHHHTTCGGGTTSBGGGSCHHHHHHHHHHHHHHTCCSEEEEES
T ss_pred eeeeeehhhhccccchhhhhhhcccccHHHHHHHHHHHHHhcCcchhccCchhhCCcHHHHHHHHHHHHHhCcCchhhcC
Confidence 99985321 111 145677888999987766555555533 899999999999999
Q ss_pred CCcCCCHHHHHHHHHHHHHhc-CCceEEEeecCcccccc-cCEEEEEeCcEEeeecChhHHhc
Q 037346 1078 ATASVDTATDNQIQQTLRQHF-SDCTVVTIAHRITSVLD-SAMVLLLNHGLIKEYDSPTKLLE 1138 (1156)
Q Consensus 1078 aTS~LD~~te~~I~~~l~~~~-~~~TvI~IaHrl~ti~~-~D~I~Vl~~G~IvE~G~~~eLl~ 1138 (1156)
||++||+.+.+.|.+.|+++. +|+|||+|+|+++.+.. ||||+||++|+|++.|+|+|+.+
T Consensus 177 Pt~gLD~~~~~~i~~~i~~l~~~g~til~vsHdl~~~~~~~Drv~vm~~G~iv~~g~~~e~~~ 239 (254)
T d1g6ha_ 177 PIAGVAPGLAHDIFNHVLELKAKGITFLIIEHRLDIVLNYIDHLYVMFNGQIIAEGRGEEEIK 239 (254)
T ss_dssp TTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCCSTTGGGCSEEEEEETTEEEEEEESHHHHH
T ss_pred CcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCcHHHHHHhCCEEEEEeCCEEEEEecHHHHhh
Confidence 999999999999999998763 58999999999999865 99999999999999999999775
|
| >d1ji0a_ c.37.1.12 (A:) Branched chain aminoacid ABC transporter {Thermotoga maritima, TM1139 [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Branched chain aminoacid ABC transporter species: Thermotoga maritima, TM1139 [TaxId: 2336]
Probab=100.00 E-value=1e-35 Score=318.19 Aligned_cols=193 Identities=19% Similarity=0.351 Sum_probs=164.1
Q ss_pred eEEEEEEEEEEcCCCCceeeCCCCCCHHHHHHHHhhcccCCCceEEEcCeeCCCCChHHHhh-cCeeeccccccccc-cc
Q 037346 947 EVNIRHLQVRYAPNLPLVLRGRTGSGKSTLIQTLFRIVESTAGHILIDGKDISLIGLHDLRT-RLSIIPQDPTMFEG-TT 1024 (1156)
Q Consensus 947 ~I~~~~Vsf~Y~~~~~~vL~G~SGsGKSTL~~lL~rl~~p~~G~I~idG~di~~i~~~~LR~-~i~~VpQdp~LF~g-TI 1024 (1156)
...++||||..++++-++|.||||||||||+++|+|+++|++|+|.+||.|+.+.+.+..++ .++++||++.+|.. |+
T Consensus 19 ~~al~~vs~~i~~Gei~~liGpnGaGKSTl~~~i~Gl~~p~~G~I~~~G~~i~~~~~~~~~r~gi~~~~q~~~l~~~ltv 98 (240)
T d1ji0a_ 19 IHAIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQKGKIIFNGQDITNKPAHVINRMGIALVPEGRRIFPELTV 98 (240)
T ss_dssp EEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHTTEEEECSSCCCCTTSBH
T ss_pred EEEEeeeeEEECCCCEEEEECCCCCcHHHHHHHHhCCCCCCccEEEecccccccccHHHHHHhcccccCcccccCCcccH
Confidence 45688888888889988999999999999999999999999999999999999999887654 48999999999986 99
Q ss_pred hhccCCCC----CCC--HHHHHHHHHHc-CCChHHHhhcCCcccc-------ccccccCCCEEEEecCCcCCCHHHHHHH
Q 037346 1025 RSNLDPLE----EHA--DEQIWEALDKC-QLGDEVRKKKGKLDSQ-------GRVLLKKSKVLVLDEATASVDTATDNQI 1090 (1156)
Q Consensus 1025 r~Nl~~~~----~~~--deei~~al~~~-~l~~~i~~lp~gl~s~-------ARALLr~~~ILiLDEaTS~LD~~te~~I 1090 (1156)
+||+.++. ... ++++.++++.. ++.+.....|..|.-+ ||||+.+|+||||||||++||+.+...|
T Consensus 99 ~en~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~LSGG~~Qrv~iAraL~~~P~lLllDEPt~gLD~~~~~~i 178 (240)
T d1ji0a_ 99 YENLMMGAYNRKDKEGIKRDLEWIFSLFPRLKERLKQLGGTLSGGEQQMLAIGRALMSRPKLLMMDEPSLGLAPILVSEV 178 (240)
T ss_dssp HHHHHGGGTTCCCSSHHHHHHHHHHHHCHHHHTTTTSBSSSSCHHHHHHHHHHHHHTTCCSEEEEECTTTTCCHHHHHHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHhhChHHHHhCchhhCCHHHHHHHHHHHHHHhCCCEeeecCCCcCCCHHHHHHH
Confidence 99985421 111 34455666655 5656666666666543 8999999999999999999999999999
Q ss_pred HHHHHHhc-CCceEEEeecCcccccc-cCEEEEEeCcEEeeecChhHHhcC
Q 037346 1091 QQTLRQHF-SDCTVVTIAHRITSVLD-SAMVLLLNHGLIKEYDSPTKLLEN 1139 (1156)
Q Consensus 1091 ~~~l~~~~-~~~TvI~IaHrl~ti~~-~D~I~Vl~~G~IvE~G~~~eLl~~ 1139 (1156)
.+.|+++. +|+|+|+|+|+++.+.. ||||+||++|+|++.|+|+|++++
T Consensus 179 ~~~i~~l~~~g~til~~tH~l~~~~~~~drv~vl~~G~iv~~g~~~el~~~ 229 (240)
T d1ji0a_ 179 FEVIQKINQEGTTILLVEQNALGALKVAHYGYVLETGQIVLEGKASELLDN 229 (240)
T ss_dssp HHHHHHHHHTTCCEEEEESCHHHHHHHCSEEEEEETTEEEEEEEHHHHHTC
T ss_pred HHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHhcC
Confidence 99999864 57899999999988765 999999999999999999999975
|
| >d1l7vc_ c.37.1.12 (C:) ABC transporter involved in vitamin B12 uptake, BtuD {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: ABC transporter involved in vitamin B12 uptake, BtuD species: Escherichia coli [TaxId: 562]
Probab=99.97 E-value=4e-32 Score=289.50 Aligned_cols=189 Identities=21% Similarity=0.292 Sum_probs=166.6
Q ss_pred EEEEEEEEcCCCCceeeCCCCCCHHHHHHHHhhcccCCCceEEEcCeeCCCCChHHHhhcCeeeccccc-cccccchhcc
Q 037346 950 IRHLQVRYAPNLPLVLRGRTGSGKSTLIQTLFRIVESTAGHILIDGKDISLIGLHDLRTRLSIIPQDPT-MFEGTTRSNL 1028 (1156)
Q Consensus 950 ~~~Vsf~Y~~~~~~vL~G~SGsGKSTL~~lL~rl~~p~~G~I~idG~di~~i~~~~LR~~i~~VpQdp~-LF~gTIr~Nl 1028 (1156)
++||||..++|+-++|.|+||||||||+++|.|++ |++|+|.++|.|+...+...++...++++|+.. .|..++.+|+
T Consensus 15 l~~isl~I~~Gei~~iiG~nGaGKSTLl~~l~Gl~-~~~G~I~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 93 (231)
T d1l7vc_ 15 LGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMT-SGKGSIQFAGQPLEAWSATKLALHRAYLSQQQTPPFATPVWHYL 93 (231)
T ss_dssp SCSEEEEEETTCEEECBCCTTSSHHHHHHHHHTSC-CCSSEEEESSSBGGGSCHHHHHHHEEEECSCCCCCSSCBHHHHH
T ss_pred ecCEEEEEcCCCEEEEECCCCCcHHHHHHHHhCCC-CCceEEEECCEECCcCCHHHHHhhceeeeccccCCccccHHHHh
Confidence 67789999999999999999999999999999986 689999999999999999999999999999886 4677888887
Q ss_pred CCCC--CCCHHHHHHHHHHcCCChHHHhhcCCcccc-------cccccc-------CCCEEEEecCCcCCCHHHHHHHHH
Q 037346 1029 DPLE--EHADEQIWEALDKCQLGDEVRKKKGKLDSQ-------GRVLLK-------KSKVLVLDEATASVDTATDNQIQQ 1092 (1156)
Q Consensus 1029 ~~~~--~~~deei~~al~~~~l~~~i~~lp~gl~s~-------ARALLr-------~~~ILiLDEaTS~LD~~te~~I~~ 1092 (1156)
..+. ....+.+.++++.+++.+++...+..|..+ ||||++ +|+||||||||++||+.+...|.+
T Consensus 94 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~LSgG~~Qrv~iA~al~~~~p~~~p~p~llllDEPt~gLD~~~~~~i~~ 173 (231)
T d1l7vc_ 94 TLHQHDKTRTELLNDVAGALALDDKLGRSTNQLSGGEWQRVRLAAVVLQITPQANPAGQLLLLDEPMNSLDVAQQSALDK 173 (231)
T ss_dssp HHHCSCTTCHHHHHHHHHHTTCTTTTTSBGGGCCHHHHHHHHHHHHHHHHCTTTCTTCCEEEESSCSTTCCHHHHHHHHH
T ss_pred hhccchhhHHHHHHHHHHhcCCHhHhCcChhhcCHHHHHHHHHHHHHHhhCcccCCCCCEEEEcCCCCCCCHHHHHHHHH
Confidence 5432 233667889999999999887777766644 899997 679999999999999999999999
Q ss_pred HHHHh-cCCceEEEeecCccccc-ccCEEEEEeCcEEeeecChhHHhcC
Q 037346 1093 TLRQH-FSDCTVVTIAHRITSVL-DSAMVLLLNHGLIKEYDSPTKLLEN 1139 (1156)
Q Consensus 1093 ~l~~~-~~~~TvI~IaHrl~ti~-~~D~I~Vl~~G~IvE~G~~~eLl~~ 1139 (1156)
.|+++ .+++|||+|+|+++.+. .||||+||++|+|++.|+|+|++.+
T Consensus 174 ~i~~l~~~g~tii~vtHdl~~~~~~~dri~vl~~G~iv~~G~~~ev~~~ 222 (231)
T d1l7vc_ 174 ILSALCQQGLAIVMSSHDLNHTLRHAHRAWLLKGGKMLASGRREEVLTP 222 (231)
T ss_dssp HHHHHHHTTCEEEECCCCHHHHHHHCSBCCBEETTEECCCSBHHHHSCH
T ss_pred HHHHHHhCCCEEEEEeCCHHHHHHHCCEEEEEECCEEEEECCHHHHhCC
Confidence 99886 36889999999998755 5999999999999999999999964
|
| >d1sgwa_ c.37.1.12 (A:) Putative ABC transporter PF0895 {Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative ABC transporter PF0895 species: Pyrococcus furiosus [TaxId: 2261]
Probab=99.95 E-value=6.5e-29 Score=258.75 Aligned_cols=169 Identities=18% Similarity=0.340 Sum_probs=140.0
Q ss_pred EEEEEEEEEcCCCCceeeCCCCCCHHHHHHHHhhcccCCCceEEEcCeeCCCCChHHHhhcCeeeccccccccc-cchhc
Q 037346 949 NIRHLQVRYAPNLPLVLRGRTGSGKSTLIQTLFRIVESTAGHILIDGKDISLIGLHDLRTRLSIIPQDPTMFEG-TTRSN 1027 (1156)
Q Consensus 949 ~~~~Vsf~Y~~~~~~vL~G~SGsGKSTL~~lL~rl~~p~~G~I~idG~di~~i~~~~LR~~i~~VpQdp~LF~g-TIr~N 1027 (1156)
.++||||..++|+-++|.||||||||||+++|+|+++|++|+|.+||.++.+ +|.+++++||++.++.. |+++|
T Consensus 16 vl~~is~~i~~Gei~~l~G~NGsGKSTLl~~i~gl~~p~~G~I~~~g~~i~~-----~~~~i~~~~~~~~~~~~~t~~~~ 90 (200)
T d1sgwa_ 16 VLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKPLKGEIIYNGVPITK-----VKGKIFFLPEEIIVPRKISVEDY 90 (200)
T ss_dssp EEEEEEEEEETTCCEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEEGGG-----GGGGEEEECSSCCCCTTSBHHHH
T ss_pred EEeceEEEEcCCCEEEEECCCCChHHHHHHHHhcccccCCCEEEECCEehhH-----hcCcEEEEeecccCCCCcCHHHH
Confidence 5888888888999889999999999999999999999999999999998864 68899999999988765 89999
Q ss_pred cCC-----CCCCCHHHHHHHHHHcCCChHHHhhcCCcccc-------ccccccCCCEEEEecCCcCCCHHHHHHHHHHHH
Q 037346 1028 LDP-----LEEHADEQIWEALDKCQLGDEVRKKKGKLDSQ-------GRVLLKKSKVLVLDEATASVDTATDNQIQQTLR 1095 (1156)
Q Consensus 1028 l~~-----~~~~~deei~~al~~~~l~~~i~~lp~gl~s~-------ARALLr~~~ILiLDEaTS~LD~~te~~I~~~l~ 1095 (1156)
+.. +.+.+++++.++++.+++.+. .+.+..|..+ ||||+++|+|+||||||++||+++...|.+.|.
T Consensus 91 l~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~~~LSgG~~qrv~ia~al~~~~~llllDEPt~gLD~~~~~~i~~~l~ 169 (200)
T d1sgwa_ 91 LKAVASLYGVKVNKNEIMDALESVEVLDL-KKKLGELSQGTIRRVQLASTLLVNAEIYVLDDPVVAIDEDSKHKVLKSIL 169 (200)
T ss_dssp HHHHHHHTTCCCCHHHHHHHHHHTTCCCT-TSBGGGSCHHHHHHHHHHHHTTSCCSEEEEESTTTTSCTTTHHHHHHHHH
T ss_pred HHHHHHhcCCccCHHHHHHHHHHcCCccc-ccccCcCCCcHHHHHHHHHHHhcCCCEEEEcCcccccCHHHHHHHHHHHH
Confidence 742 345668899999999987653 2333444433 899999999999999999999999999999998
Q ss_pred HhcCCceEEEeecCcccccccCEEEEEeC
Q 037346 1096 QHFSDCTVVTIAHRITSVLDSAMVLLLNH 1124 (1156)
Q Consensus 1096 ~~~~~~TvI~IaHrl~ti~~~D~I~Vl~~ 1124 (1156)
+..+++++++|+|+ +.+..||++.+|.+
T Consensus 170 ~~~~~~~~~ii~~~-~~l~~~D~~~~l~~ 197 (200)
T d1sgwa_ 170 EILKEKGIVIISSR-EELSYCDVNENLHK 197 (200)
T ss_dssp HHHHHHSEEEEEES-SCCTTSSEEEEGGG
T ss_pred HHHhCCCEEEEEEe-chhhhcchhhheee
Confidence 87665555555555 23567999998854
|
| >d3b60a2 f.37.1.1 (A:10-328) Multidrug resistance ABC transporter MsbA, N-terminal domain {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: ABC transporter transmembrane region superfamily: ABC transporter transmembrane region family: ABC transporter transmembrane region domain: Multidrug resistance ABC transporter MsbA, N-terminal domain species: Salmonella typhimurium [TaxId: 90371]
Probab=99.80 E-value=1.8e-17 Score=184.64 Aligned_cols=268 Identities=11% Similarity=0.077 Sum_probs=189.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccc---chh-hHH------HHHHHHHHHHHHHHHHHHH
Q 037346 74 VLFFSAWQEILFIAILALLYTLATYVGPYLIDNFVQYLNGRQAFE---YEG-YVL------CLSERHWFFQVQQFGIRFR 143 (1156)
Q Consensus 74 ~l~~~~~~~~~~~~~~~~~~~~~~~~~p~ll~~~i~~~~~~~~~~---~~g-~~l------~~~~~~~~~~~~~~~~~~r 143 (1156)
.+.+.+++.++.++++.++..++....|++++.++|......+.. +.. .++ .++.....+...+.+.++.
T Consensus 9 ~~~~~~k~~l~~~~i~~~~~~~~~~~~~~~~~~~id~~~~~~~~~~l~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~ 88 (319)
T d3b60a2 9 PTIAPFKAGLIVAGIALILNAASDTFMLSLLKPLLDDGFGKTDRSVLLWMPLVVIGLMILRGITSYISSYCISWVSGKVV 88 (319)
T ss_dssp HHHGGGHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHSSTTSTTHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhccc
Confidence 355678899999999999999999999999999999765433211 111 111 2222333345678889999
Q ss_pred HHHHHHHHHHHhcCCccccCCCCHHHHHHHHHHHHHH---------------------HHHHHHHHHHHHHHHHHHHHHH
Q 037346 144 ATLFAMIYNKGLTLSGQAKQGNTSGEIINLIAVDAER---------------------ALLILYKKLGLASIATLLATAI 202 (1156)
Q Consensus 144 ~~l~~~i~~k~l~l~~~~~~~~~~g~i~nl~s~D~~~---------------------~~~ll~~~lg~~~l~~~~~~~~ 202 (1156)
..++..+|+|.++.+...+++.++|++++++++|++. ++++++..-...+++.++++++
T Consensus 89 ~~l~~~~~~~ll~~~~~~~~~~~~g~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~li~l~~~~~ 168 (319)
T d3b60a2 89 MTMRRRLFGHMMGMPVAFFDKQSTGTLLSRITYDSEQVASSSSGALITVVREGASIIGLFIMMFYYSWQLSIILVVLAPI 168 (319)
T ss_dssp HHHHHHHHHHHHTCCSTHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHH
T ss_pred cchhhHHHHhhcccchhhccccccccccccccccccccccccccccchhhhhhhhhhhHHHHHHhhhccchhhhhhHHHH
Confidence 9999999999999999999999999999999999987 0011111111122223333344
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH---------HHHHHHHHHHHHHHHHHHHHH
Q 037346 203 VMLANFPLGRLREKFQDKFMETKDRRIKATSEILRNMRILKLQGWELKKN---------ETAWLKKSVYTEAMISFFCWG 273 (1156)
Q Consensus 203 ~~~~~~~~~~~~~~~~~~~~~~~d~r~~~~~e~l~~i~~IK~~~~e~r~~---------e~~~~~~~~~~~~~~~~~~~~ 273 (1156)
...+.....+...+..++..+..++..+.+.|.++|+++||.+++|.+.. ..+...+..............
T Consensus 169 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 248 (319)
T d3b60a2 169 VSIAIRVVSKRFRSISKNMQNTMGQVTTSAEQMLKGHKEVLIFGGQEVETKRFDKVSNKMRLQGMKMVSASSISDPIIQL 248 (319)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhhhHHHHHHHHHHhhhhhHHHHHHHhhcCCceeeehhccchhhhhhhhhhhhhhHHHHHHHHHHHhcccchhh
Confidence 44555566777788888888999999999999999999999999991111 111111111112221111111
Q ss_pred HH--HHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCC
Q 037346 274 AP--TFVSVVTFGSCILLGIPLESGMILSALTTFKILQEPIYYLPESISMMIQAKVPLDRIASFLCLEGL 341 (1156)
Q Consensus 274 ~~--~~~~~~~f~~~~~~~~~lt~~~~ft~l~~~~~l~~pl~~l~~~~~~~~~a~~s~~Ri~~fl~~~~~ 341 (1156)
.. ..+.+++++.+.+..+.+|+|.+++++.+...+..|+..++..+..+.++.+|.+||.++|+.|++
T Consensus 249 ~~~~~~~~~l~~g~~~~~~g~it~g~l~~~~~~~~~~~~pl~~l~~~~~~~~~~~~s~~Ri~elld~~~E 318 (319)
T d3b60a2 249 IASLALAFVLYAASFPSVMDSLTAGTITVVFSSMIALMRPLKSLTNVNAQFQRGMAACQTLFAILDSEQE 318 (319)
T ss_dssp HHHHHHHHHHHHHHSSSTTSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCS
T ss_pred hhhhhhHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCC
Confidence 11 223345566777778899999999999999999999999999999999999999999999988753
|
| >d2hyda2 f.37.1.1 (A:1-323) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: ABC transporter transmembrane region superfamily: ABC transporter transmembrane region family: ABC transporter transmembrane region domain: Putative multidrug export ATP-binding/permease protein SAV1866 species: Staphylococcus aureus [TaxId: 1280]
Probab=99.79 E-value=1.5e-17 Score=185.74 Aligned_cols=267 Identities=16% Similarity=0.104 Sum_probs=190.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccc------c----hhhHH-------HHHHHHHHHHHH
Q 037346 74 VLFFSAWQEILFIAILALLYTLATYVGPYLIDNFVQYLNGRQAFE------Y----EGYVL-------CLSERHWFFQVQ 136 (1156)
Q Consensus 74 ~l~~~~~~~~~~~~~~~~~~~~~~~~~p~ll~~~i~~~~~~~~~~------~----~g~~l-------~~~~~~~~~~~~ 136 (1156)
.+.+.|++.++..+++.++..++..+.|++++.++|.+.+..... . .+..+ .+......+...
T Consensus 7 ~~~k~~k~~~~~~~~~~~~~~~~~~~~p~l~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ 86 (323)
T d2hyda2 7 QFVKPYKYRIFATIIVGIIKFGIPMLIPLLIKYAIDGVINNHALTTDEKVHHLTIAIGIALFIFVIVRPPIEFIRQYLAQ 86 (323)
T ss_dssp HHHGGGHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456778899999999999999999999999999999876443211 0 11111 111222234456
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCccccCCCCHHHHHHHHHHHHHH---------------------HHHHHHHHHHHHHHH
Q 037346 137 QFGIRFRATLFAMIYNKGLTLSGQAKQGNTSGEIINLIAVDAER---------------------ALLILYKKLGLASIA 195 (1156)
Q Consensus 137 ~~~~~~r~~l~~~i~~k~l~l~~~~~~~~~~g~i~nl~s~D~~~---------------------~~~ll~~~lg~~~l~ 195 (1156)
+.+.+++..++..+|+|.++++...++++++|++++++++|++. +++++++.-...+++
T Consensus 87 ~~~~~~~~~lr~~l~~~ll~~~~~~~~~~~~g~~~~~~~~d~~~i~~~~~~~~~~~~~~~~~~i~~~~~l~~~~~~l~li 166 (323)
T d2hyda2 87 WTSNKILYDIRKKLYNHLQALSARFYANNQVGQVISRVINDVEQTKDFILTGLMNIWLDCITIIIALSIMFFLDVKLTLA 166 (323)
T ss_dssp HHHHHHHHHHHHHHHHHHHHSCHHHHHTSCHHHHHHHHHHHHHHTHHHHHCCCCCHHHHHHHHHHHHHHHHHHCTTTHHH
T ss_pred HHHHhhhHHHHHHHhhhhhcccccccccccccccccccchhhhhhccchhhhhhhcchhhhhhhhhhhhhhhhhhhHHHH
Confidence 78889999999999999999999999999999999999999987 111111111122233
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH---------HHHHHHHHHHHHHHH
Q 037346 196 TLLATAIVMLANFPLGRLREKFQDKFMETKDRRIKATSEILRNMRILKLQGWELKK---------NETAWLKKSVYTEAM 266 (1156)
Q Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~r~~~~~e~l~~i~~IK~~~~e~r~---------~e~~~~~~~~~~~~~ 266 (1156)
.++++++...+...+.+...+..++..+..++..+.+.|.++|+++||.+++|.+. +..+...+.......
T Consensus 167 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~Ik~~~~e~~~~~~~~~~~~~~~~~~~k~~~~~~~ 246 (323)
T d2hyda2 167 ALFIFPFYILTVYVFFGRLRKLTRERSQALAEVQGFLHERVQGISVVKSFAIEDNEAKNFDKKNTNFLTRALKHTRWNAY 246 (323)
T ss_dssp HTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhcccccchhHHHHHHHHHHHHHHHHHhcCCchhhhHhhhccchhhhhcccccccchhhHHhhhhhh
Confidence 33444455555666778888888888889999999999999999999999998111 111111111111111
Q ss_pred HHHHHHHH--HHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCC
Q 037346 267 ISFFCWGA--PTFVSVVTFGSCILLGIPLESGMILSALTTFKILQEPIYYLPESISMMIQAKVPLDRIASFLCLEG 340 (1156)
Q Consensus 267 ~~~~~~~~--~~~~~~~~f~~~~~~~~~lt~~~~ft~l~~~~~l~~pl~~l~~~~~~~~~a~~s~~Ri~~fl~~~~ 340 (1156)
........ ...+..++++.+.+..+.+|+|.+++++.++..+..|+..++..+..+.++.+|++||.++|++|+
T Consensus 247 ~~~~~~~~~~~~~~~~l~~~~~~~~~g~~s~g~l~~~~~~~~~l~~~l~~l~~~~~~~~~~~~s~~Ri~elLd~e~ 322 (323)
T d2hyda2 247 SFAAINTVTDIGPIIVIGVGAYLAISGSITVGTLAAFVGYLELLFGPLRRLVASFTTLTQSFASMDRVFQLIDEDY 322 (323)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHTHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHTCCC
T ss_pred ccccccccchhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
Confidence 11111111 122334567777778889999999999999999999999999999999999999999999998754
|
| >d3b60a2 f.37.1.1 (A:10-328) Multidrug resistance ABC transporter MsbA, N-terminal domain {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: ABC transporter transmembrane region superfamily: ABC transporter transmembrane region family: ABC transporter transmembrane region domain: Multidrug resistance ABC transporter MsbA, N-terminal domain species: Salmonella typhimurium [TaxId: 90371]
Probab=99.68 E-value=1.6e-15 Score=168.44 Aligned_cols=213 Identities=13% Similarity=0.183 Sum_probs=171.9
Q ss_pred HHHHHHHHHHHHHHHHhccccccccccccccchhhhhcccccccchhhhcccchHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 037346 712 AGYKTATQLFNKMHVCIFRAPMYFFDSTPSGRILNRVSENVKWADQSAADMDIPYDIGAFAFSMIQLLGIIVVMSLVAWQ 791 (1156)
Q Consensus 712 ~~~~~~~~l~~~l~~~ll~~p~~ff~~~~~G~il~R~s~d~~~~d~~~~d~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 791 (1156)
.+.++..++|+++++++++.|++||+++++|++++|++ .|+..+...+...+..++..++.+++.+++++..+|.
T Consensus 83 ~~~~~~~~l~~~~~~~ll~~~~~~~~~~~~g~~~~~~~-----~d~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 157 (319)
T d3b60a2 83 VSGKVVMTMRRRLFGHMMGMPVAFFDKQSTGTLLSRIT-----YDSEQVASSSSGALITVVREGASIIGLFIMMFYYSWQ 157 (319)
T ss_dssp HHHHHHHHHHHHHHHHHHTCCSTHHHHSCHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred hhhccccchhhHHHHhhcccchhhcccccccccccccc-----ccccccccccccccchhhhhhhhhhhHHHHHHhhhcc
Confidence 45688899999999999999999999999999999999 7888888888888888888888899999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhChHHHHHHhhccchhhhhhcchHHHHHHHHHHHHHHHhhHHHHHHH
Q 037346 792 VLIVFVPVIATFIWYQQYYITSTRELSRLIGVCKAPVIQQFSETISGSTTIRSLDQELRFRDTNMKLIDEYSRPKFHIAG 871 (1156)
Q Consensus 792 l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~e~l~Gi~tIra~~~e~~~~~~~~~~~~~~~~~~~~~~~ 871 (1156)
++++++..+++...+..++.+..++..+...+..+...+.+.|.++|+++||+|+.|+.+.+++.+..++..+...+...
T Consensus 158 l~li~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~ 237 (319)
T d3b60a2 158 LSIILVVLAPIVSIAIRVVSKRFRSISKNMQNTMGQVTTSAEQMLKGHKEVLIFGGQEVETKRFDKVSNKMRLQGMKMVS 237 (319)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhhhhhHHHHHHHHHHhhhhHHHHHHHHHHhhhhhHHHHHHHhhcCCceeeehhccchhhhhhhhhhhhhhHHHHHHHH
Confidence 99888888888888888888888888888888899999999999999999999999999999999999988888877766
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-HcCCCcc-----------------------chHHHHHHHhHHHHHHHHhhcCCC
Q 037346 872 AMEWLRFCIDMLSSITFAFSLAFLI-SVPNGII-----------------------HPYKNLERKIISVERILQCACIPS 927 (1156)
Q Consensus 872 ~~~~~~~~l~~~~~~~~~~~~~~~~-~~~~~~~-----------------------~~~~~~~~~~~s~~Ri~~~~~~~~ 927 (1156)
...+......++..+..+++..+.. ....+.+ +...++.++.++.+|+.++++.|+
T Consensus 238 ~~~~~~~~~~~~~~~~~~~~l~~g~~~~~~g~it~g~l~~~~~~~~~~~~pl~~l~~~~~~~~~~~~s~~Ri~elld~~~ 317 (319)
T d3b60a2 238 ASSISDPIIQLIASLALAFVLYAASFPSVMDSLTAGTITVVFSSMIALMRPLKSLTNVNAQFQRGMAACQTLFAILDSEQ 317 (319)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHSSSTTSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCC
T ss_pred HHHhcccchhhhhhhhhHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 6666555555444433322222111 1111111 122677888999999999998887
Q ss_pred CC
Q 037346 928 EP 929 (1156)
Q Consensus 928 e~ 929 (1156)
|+
T Consensus 318 E~ 319 (319)
T d3b60a2 318 EK 319 (319)
T ss_dssp SC
T ss_pred CC
Confidence 63
|
| >d2hyda2 f.37.1.1 (A:1-323) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: ABC transporter transmembrane region superfamily: ABC transporter transmembrane region family: ABC transporter transmembrane region domain: Putative multidrug export ATP-binding/permease protein SAV1866 species: Staphylococcus aureus [TaxId: 1280]
Probab=99.65 E-value=1.4e-15 Score=169.55 Aligned_cols=212 Identities=13% Similarity=0.150 Sum_probs=163.6
Q ss_pred HHHHHHHHHHHHHHHHhccccccccccccccchhhhhcccccccchhhhcccchHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 037346 712 AGYKTATQLFNKMHVCIFRAPMYFFDSTPSGRILNRVSENVKWADQSAADMDIPYDIGAFAFSMIQLLGIIVVMSLVAWQ 791 (1156)
Q Consensus 712 ~~~~~~~~l~~~l~~~ll~~p~~ff~~~~~G~il~R~s~d~~~~d~~~~d~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 791 (1156)
.+.+...++|++++++++++|++||+++++|++++|++ .|...+...+...+..++..++.+++.+++++..+|+
T Consensus 88 ~~~~~~~~lr~~l~~~ll~~~~~~~~~~~~g~~~~~~~-----~d~~~i~~~~~~~~~~~~~~~~~~i~~~~~l~~~~~~ 162 (323)
T d2hyda2 88 TSNKILYDIRKKLYNHLQALSARFYANNQVGQVISRVI-----NDVEQTKDFILTGLMNIWLDCITIIIALSIMFFLDVK 162 (323)
T ss_dssp HHHHHHHHHHHHHHHHHHHSCHHHHHTSCHHHHHHHHH-----HHHHHTHHHHHCCCCCHHHHHHHHHHHHHHHHHHCTT
T ss_pred HHHhhhHHHHHHHhhhhhcccccccccccccccccccc-----hhhhhhccchhhhhhhcchhhhhhhhhhhhhhhhhhh
Confidence 45577888999999999999999999999999999999 6665555555555555666777788888889999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhChHHHHHHhhccchhhhhhcchHHHHHHHHHHHHHHHhhHHHHHHH
Q 037346 792 VLIVFVPVIATFIWYQQYYITSTRELSRLIGVCKAPVIQQFSETISGSTTIRSLDQELRFRDTNMKLIDEYSRPKFHIAG 871 (1156)
Q Consensus 792 l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~e~l~Gi~tIra~~~e~~~~~~~~~~~~~~~~~~~~~~~ 871 (1156)
++++++++.++...+...+.+..++..+...+..++..+.+.|+++|+++||+|+.|+.+.+++.+..++..+...+...
T Consensus 163 l~li~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~Ik~~~~e~~~~~~~~~~~~~~~~~~~k~~~ 242 (323)
T d2hyda2 163 LTLAALFIFPFYILTVYVFFGRLRKLTRERSQALAEVQGFLHERVQGISVVKSFAIEDNEAKNFDKKNTNFLTRALKHTR 242 (323)
T ss_dssp THHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhhcccccchhHHHHHHHHHHHHHHHHHhcCCchhhhHhhhccchhhhhcccccccchhhHHhh
Confidence 99988888888888888888888999998999999999999999999999999999999999999999888887777666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-HcCCC-----------------------ccchHHHHHHHhHHHHHHHHhhcCCC
Q 037346 872 AMEWLRFCIDMLSSITFAFSLAFLI-SVPNG-----------------------IIHPYKNLERKIISVERILQCACIPS 927 (1156)
Q Consensus 872 ~~~~~~~~l~~~~~~~~~~~~~~~~-~~~~~-----------------------~~~~~~~~~~~~~s~~Ri~~~~~~~~ 927 (1156)
...+.......+..+...+...+.. ....+ ......++.+..++++|+.+++|.++
T Consensus 243 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~s~g~l~~~~~~~~~l~~~l~~l~~~~~~~~~~~~s~~Ri~elLd~e~ 322 (323)
T d2hyda2 243 WNAYSFAAINTVTDIGPIIVIGVGAYLAISGSITVGTLAAFVGYLELLFGPLRRLVASFTTLTQSFASMDRVFQLIDEDY 322 (323)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHTHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHTCCC
T ss_pred hhhhccccccccchhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
Confidence 6555555544443333222211100 00011 11122677888999999999997654
Q ss_pred C
Q 037346 928 E 928 (1156)
Q Consensus 928 e 928 (1156)
|
T Consensus 323 e 323 (323)
T d2hyda2 323 D 323 (323)
T ss_dssp S
T ss_pred C
Confidence 4
|
| >d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein Aq_1292 {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hypothetical kinase-like protein Aq 1292 species: Aquifex aeolicus [TaxId: 63363]
Probab=99.52 E-value=5.2e-16 Score=158.14 Aligned_cols=146 Identities=9% Similarity=0.013 Sum_probs=98.8
Q ss_pred EEEEEcCCCCChHHHHHHHhCCCCCCCcEEEEcCeEE--EEec-----------CCcCCCccHHHHhhcCCCCCHHHHHH
Q 037346 388 RVAVCGTVGSGKSSCLSCILGGVPKESGIIRLCGTKA--YVAQ-----------SPWIQSGKIEENILFGKEMDRERYER 454 (1156)
Q Consensus 388 ~~~ivG~~GsGKSTll~~i~g~~~~~~G~i~~~g~~~--~v~Q-----------~~~~~~~ti~eni~~~~~~~~~~~~~ 454 (1156)
.++|+||||||||||++.|+|++++..|.+.+++... +-.| .+.+...+...+..+++
T Consensus 2 ki~I~G~~G~GKSTLl~~i~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------- 72 (178)
T d1ye8a1 2 KIIITGEPGVGKTTLVKKIVERLGKRAIGFWTEEVRDPETKKRTGFRIITTEGKKKIFSSKFFTSKKLVGS--------- 72 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHGGGEEEEEEEEEC------CCEEEEEETTCCEEEEEETTCCCSSEETT---------
T ss_pred EEEEECCCCcHHHHHHHHHHhcCCCCcceEEECCcchHHHHHhhhhhhhhhhHHHHHHhhhhhhhhhhhhh---------
Confidence 4899999999999999999999999999998875321 1111 01111111111111110
Q ss_pred HHHHhCCchhhhhCCCCCccccccCCCCCCHHHHHHHHHHHhhccCCCeeeeeCCCCCcC--HHHHHHHHHHHHhcCCCE
Q 037346 455 VLEACSLKKDLEVLPFGDQTIIGERGINLSGGQKQRIQIARPLYQDADIFLLDDPFSPVD--DHTGAHLFKFCWVSSSKT 532 (1156)
Q Consensus 455 ~~~~~~l~~~~~~~~~g~~t~v~~~g~~LSgGqkqRi~lAral~~~~~illlDep~s~lD--~~~~~~i~~~~~~~~~~t 532 (1156)
..+......+|+|+++|.++++++..+|+++++|||....+ ......+.+ ++...+.|
T Consensus 73 -------------------~~~~~~~~~~~~~~~~~~~l~~~~~~~~~vlllDE~~~~~~~~~~~~~~l~~-~l~~~~~~ 132 (178)
T d1ye8a1 73 -------------------YGVNVQYFEELAIPILERAYREAKKDRRKVIIIDEIGKMELFSKKFRDLVRQ-IMHDPNVN 132 (178)
T ss_dssp -------------------EEECHHHHHHHHHHHHHHHHHHHHHCTTCEEEECCCSTTGGGCHHHHHHHHH-HHTCTTSE
T ss_pred -------------------hhcCcchhhhhhhhhHHHHHHHHHhcCCCceeecCCCccchhhHHHHHHHHH-HhccCCCE
Confidence 00011113589999999999999999999999999865443 333333322 23345789
Q ss_pred EEEEccCCCccccCCEEEEEeCCeEEEccC
Q 037346 533 VIYATHQVEFLPAADLILVIKDGKITQAGK 562 (1156)
Q Consensus 533 vi~vtH~~~~~~~~d~i~~l~~G~i~~~g~ 562 (1156)
+|+++|+.+..+.+|++..+++|++++-+.
T Consensus 133 il~~~h~~~~~~~~~~i~~~~~~~i~~v~~ 162 (178)
T d1ye8a1 133 VVATIPIRDVHPLVKEIRRLPGAVLIELTP 162 (178)
T ss_dssp EEEECCSSCCSHHHHHHHTCTTCEEEECCT
T ss_pred EEEEEccHHHHHhhceEEEEeCCEEEEECC
Confidence 999999988777899999999999987653
|
| >d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein Aq_1292 {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hypothetical kinase-like protein Aq 1292 species: Aquifex aeolicus [TaxId: 63363]
Probab=99.49 E-value=1.6e-15 Score=154.45 Aligned_cols=170 Identities=11% Similarity=0.032 Sum_probs=112.8
Q ss_pred ceeeCCCCCCHHHHHHHHhhcccCCCceEEEcCeeCCCCChHHHhhcCeeeccccccccccchhccCCCCCC-CHHHHHH
Q 037346 963 LVLRGRTGSGKSTLIQTLFRIVESTAGHILIDGKDISLIGLHDLRTRLSIIPQDPTMFEGTTRSNLDPLEEH-ADEQIWE 1041 (1156)
Q Consensus 963 ~vL~G~SGsGKSTL~~lL~rl~~p~~G~I~idG~di~~i~~~~LR~~i~~VpQdp~LF~gTIr~Nl~~~~~~-~deei~~ 1041 (1156)
++|.||+|||||||++.|+|+++|..|.+.++|.+....+.........+.++.+.++..+...+....+.. ..+....
T Consensus 3 i~I~G~~G~GKSTLl~~i~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (178)
T d1ye8a1 3 IIITGEPGVGKTTLVKKIVERLGKRAIGFWTEEVRDPETKKRTGFRIITTEGKKKIFSSKFFTSKKLVGSYGVNVQYFEE 82 (178)
T ss_dssp EEEECCTTSSHHHHHHHHHHHHGGGEEEEEEEEEC------CCEEEEEETTCCEEEEEETTCCCSSEETTEEECHHHHHH
T ss_pred EEEECCCCcHHHHHHHHHHhcCCCCcceEEECCcchHHHHHhhhhhhhhhhHHHHHHhhhhhhhhhhhhhhhcCcchhhh
Confidence 578899999999999999999999999999999887665544444445556666677766666554332211 2222221
Q ss_pred HHHHcCCChHHHhhcCCccccccccccCCCEEEEecCCcCC--CHHHHHHHHHHHHHhcCCceEEEeecCcccccccCEE
Q 037346 1042 ALDKCQLGDEVRKKKGKLDSQGRVLLKKSKVLVLDEATASV--DTATDNQIQQTLRQHFSDCTVVTIAHRITSVLDSAMV 1119 (1156)
Q Consensus 1042 al~~~~l~~~i~~lp~gl~s~ARALLr~~~ILiLDEaTS~L--D~~te~~I~~~l~~~~~~~TvI~IaHrl~ti~~~D~I 1119 (1156)
.... ......++++.++|++|++|||+... |.+....+.+.+++ .++|+|+++|+.+....||+|
T Consensus 83 ~~~~-----------~~~~~l~~~~~~~~~vlllDE~~~~~~~~~~~~~~l~~~l~~--~~~~il~~~h~~~~~~~~~~i 149 (178)
T d1ye8a1 83 LAIP-----------ILERAYREAKKDRRKVIIIDEIGKMELFSKKFRDLVRQIMHD--PNVNVVATIPIRDVHPLVKEI 149 (178)
T ss_dssp HHHH-----------HHHHHHHHHHHCTTCEEEECCCSTTGGGCHHHHHHHHHHHTC--TTSEEEEECCSSCCSHHHHHH
T ss_pred hhhh-----------hHHHHHHHHHhcCCCceeecCCCccchhhHHHHHHHHHHhcc--CCCEEEEEEccHHHHHhhceE
Confidence 1110 01112378889999999999986543 33333444444432 368999999999888889999
Q ss_pred EEEeCcEEeeecChhHHhcCCCChHHHHHHH
Q 037346 1120 LLLNHGLIKEYDSPTKLLENKSSSFAQLVAE 1150 (1156)
Q Consensus 1120 ~Vl~~G~IvE~G~~~eLl~~~~g~f~~l~~~ 1150 (1156)
..+++|++++-+.. +.+..+...++.
T Consensus 150 ~~~~~~~i~~v~~~-----nrd~~~~~i~~~ 175 (178)
T d1ye8a1 150 RRLPGAVLIELTPE-----NRDVILEDILSL 175 (178)
T ss_dssp HTCTTCEEEECCTT-----TTTTHHHHHHHH
T ss_pred EEEeCCEEEEECCc-----cHHHHHHHHHHH
Confidence 99999999997652 335566666554
|
| >d1e69a_ c.37.1.12 (A:) Smc head domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Smc head domain species: Thermotoga maritima [TaxId: 2336]
Probab=98.85 E-value=1.2e-08 Score=112.18 Aligned_cols=75 Identities=28% Similarity=0.356 Sum_probs=62.3
Q ss_pred CCCCHHHHHHHHHHHh----hccCCCeeeeeCCCCCcCHHHHHHHHHHHHh-cCCCEEEEEccCCCccccCCEEEE--Ee
Q 037346 481 INLSGGQKQRIQIARP----LYQDADIFLLDDPFSPVDDHTGAHLFKFCWV-SSSKTVIYATHQVEFLPAADLILV--IK 553 (1156)
Q Consensus 481 ~~LSgGqkqRi~lAra----l~~~~~illlDep~s~lD~~~~~~i~~~~~~-~~~~tvi~vtH~~~~~~~~d~i~~--l~ 553 (1156)
..+|+|||+...++.. ...++.++++|||-++|+|...+++.+.+.. .++.-+|++||++.++..+|+++. ++
T Consensus 218 ~~~~~g~~~l~~~~~~~~~~~~~~~~~~~iDEpe~~Lhp~~~~~l~~~l~~~~~~~QviitTHsp~~~~~~d~~~~v~~~ 297 (308)
T d1e69a_ 218 SLLSGGEKALVGLALLFALMEIKPSPFYVLDEVDSPLDDYNAERFKRLLKENSKHTQFIVITHNKIVMEAADLLHGVTMV 297 (308)
T ss_dssp GGSCHHHHHHHHHHHHHHHTTTSCCSEEEEESCCSSCCHHHHHHHHHHHHHHTTTSEEEEECCCTTGGGGCSEEEEEEES
T ss_pred hhhhHHHhhHHHHHhhhhhhhhccCchhhhhhccccCCHHHHHHHHHHHHHhccCCEEEEEECCHHHHHhcccEEEEEEe
Confidence 4789999999877665 3456789999999999999999988877644 456789999999999999999866 45
Q ss_pred CC
Q 037346 554 DG 555 (1156)
Q Consensus 554 ~G 555 (1156)
+|
T Consensus 298 ~g 299 (308)
T d1e69a_ 298 NG 299 (308)
T ss_dssp SS
T ss_pred CC
Confidence 66
|
| >d1w1wa_ c.37.1.12 (A:) Smc head domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Smc head domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.66 E-value=9.5e-09 Score=118.32 Aligned_cols=55 Identities=25% Similarity=0.333 Sum_probs=48.8
Q ss_pred cCCCEEEEecCCcCCCHHHHHHHHHHHHHhc-CCceEEEeecCcccccccCEEEEE
Q 037346 1068 KKSKVLVLDEATASVDTATDNQIQQTLRQHF-SDCTVVTIAHRITSVLDSAMVLLL 1122 (1156)
Q Consensus 1068 r~~~ILiLDEaTS~LD~~te~~I~~~l~~~~-~~~TvI~IaHrl~ti~~~D~I~Vl 1122 (1156)
.++||++||||+++||+++...+.+.|++.. .+.-+|+|||+..++..||+++.+
T Consensus 353 ~~~pililDE~d~~Ld~~~~~~~~~~l~~~~~~~~Q~I~iTH~~~~~~~ad~~~~V 408 (427)
T d1w1wa_ 353 QPSPFFVLDEVDAALDITNVQRIAAYIRRHRNPDLQFIVISLKNTMFEKSDALVGV 408 (427)
T ss_dssp SCCSEEEESSTTTTCCHHHHHHHHHHHHHHCBTTBEEEEECSCHHHHTTCSEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhCCCCEEEEEeCCHHHHHhcccEEEE
Confidence 5789999999999999999999999998764 345699999999999999998754
|
| >d1w1wa_ c.37.1.12 (A:) Smc head domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Smc head domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.27 E-value=4.7e-07 Score=103.70 Aligned_cols=72 Identities=19% Similarity=0.276 Sum_probs=59.6
Q ss_pred CCCCHHHHHHHHHHHhh----ccCCCeeeeeCCCCCcCHHHHHHHHHHHHh--cCCCEEEEEccCCCccccCCEEEEE
Q 037346 481 INLSGGQKQRIQIARPL----YQDADIFLLDDPFSPVDDHTGAHLFKFCWV--SSSKTVIYATHQVEFLPAADLILVI 552 (1156)
Q Consensus 481 ~~LSgGqkqRi~lAral----~~~~~illlDep~s~lD~~~~~~i~~~~~~--~~~~tvi~vtH~~~~~~~~d~i~~l 552 (1156)
..||||||.+++||-.+ +.++++++||||+++||+.....+.+.+.. ..+.-+|++||+++.+..||+++.+
T Consensus 331 ~~lSgGEk~~~~lal~lal~~~~~~pililDE~d~~Ld~~~~~~~~~~l~~~~~~~~Q~I~iTH~~~~~~~ad~~~~V 408 (427)
T d1w1wa_ 331 EYLSGGEKTVAALALLFAINSYQPSPFFVLDEVDAALDITNVQRIAAYIRRHRNPDLQFIVISLKNTMFEKSDALVGV 408 (427)
T ss_dssp GGSCHHHHHHHHHHHHHHHHTSSCCSEEEESSTTTTCCHHHHHHHHHHHHHHCBTTBEEEEECSCHHHHTTCSEEEEE
T ss_pred hhhccchHHHHHHHHHHHHhcCCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhCCCCEEEEEeCCHHHHHhcccEEEE
Confidence 46799999998876433 467889999999999999999888877644 2345699999999999999998766
|
| >d1e69a_ c.37.1.12 (A:) Smc head domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Smc head domain species: Thermotoga maritima [TaxId: 2336]
Probab=98.26 E-value=4.6e-07 Score=99.13 Aligned_cols=60 Identities=18% Similarity=0.304 Sum_probs=54.2
Q ss_pred cccCCCEEEEecCCcCCCHHHHHHHHHHHHHhcCCceEEEeecCcccccccCEEEE--EeCc
Q 037346 1066 LLKKSKVLVLDEATASVDTATDNQIQQTLRQHFSDCTVVTIAHRITSVLDSAMVLL--LNHG 1125 (1156)
Q Consensus 1066 LLr~~~ILiLDEaTS~LD~~te~~I~~~l~~~~~~~TvI~IaHrl~ti~~~D~I~V--l~~G 1125 (1156)
...+++++++|||-++|++.....+.+.|++..++.-+|++||+...+..+|+++. +++|
T Consensus 238 ~~~~~~~~~iDEpe~~Lhp~~~~~l~~~l~~~~~~~QviitTHsp~~~~~~d~~~~v~~~~g 299 (308)
T d1e69a_ 238 EIKPSPFYVLDEVDSPLDDYNAERFKRLLKENSKHTQFIVITHNKIVMEAADLLHGVTMVNG 299 (308)
T ss_dssp TTSCCSEEEEESCCSSCCHHHHHHHHHHHHHHTTTSEEEEECCCTTGGGGCSEEEEEEESSS
T ss_pred hhccCchhhhhhccccCCHHHHHHHHHHHHHhccCCEEEEEECCHHHHHhcccEEEEEEeCC
Confidence 34578999999999999999999999999999888899999999999999999855 6676
|
| >d1wb9a2 c.37.1.12 (A:567-800) DNA repair protein MutS, the C-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: DNA repair protein MutS, the C-terminal domain species: Escherichia coli [TaxId: 562]
Probab=97.56 E-value=0.00021 Score=73.88 Aligned_cols=44 Identities=20% Similarity=0.252 Sum_probs=31.4
Q ss_pred cCCCeeeeeCCCCCcCHHHHHHHHHHHH----hcCCCEEEEEccCCCc
Q 037346 499 QDADIFLLDDPFSPVDDHTGAHLFKFCW----VSSSKTVIYATHQVEF 542 (1156)
Q Consensus 499 ~~~~illlDep~s~lD~~~~~~i~~~~~----~~~~~tvi~vtH~~~~ 542 (1156)
.+..++|+||+..+=|+..+..+...++ ...+..+|++||..+.
T Consensus 119 ~~~sLvliDE~~~gT~~~eg~~l~~a~l~~l~~~~~~~~i~tTH~~~l 166 (234)
T d1wb9a2 119 TEYSLVLMDEIGRGTSTYDGLSLAWACAENLANKIKALTLFATHYFEL 166 (234)
T ss_dssp CTTEEEEEESCCCCSSSSHHHHHHHHHHHHHHHTTCCEEEEECSCGGG
T ss_pred ccccEEeecccccCCChhhhhHHHHHhhhhhhccccceEEEecchHHH
Confidence 3445999999999999988776654432 2344578888887654
|
| >d1ewqa2 c.37.1.12 (A:542-765) DNA repair protein MutS, the C-terminal domain {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: DNA repair protein MutS, the C-terminal domain species: Thermus aquaticus [TaxId: 271]
Probab=97.55 E-value=0.0002 Score=73.40 Aligned_cols=45 Identities=18% Similarity=0.218 Sum_probs=33.8
Q ss_pred cCCCeeeeeCCCCCcCHHHHHHHHHHHHh---cCCCEEEEEccCCCcc
Q 037346 499 QDADIFLLDDPFSPVDDHTGAHLFKFCWV---SSSKTVIYATHQVEFL 543 (1156)
Q Consensus 499 ~~~~illlDep~s~lD~~~~~~i~~~~~~---~~~~tvi~vtH~~~~~ 543 (1156)
.+..++|+||+..+=|+.....+...++. ..+.+++++||..+..
T Consensus 113 ~~~sLvliDE~~~gT~~~eg~ala~aile~L~~~~~~~i~tTH~~eL~ 160 (224)
T d1ewqa2 113 TENSLVLLDEVGRGTSSLDGVAIATAVAEALHERRAYTLFATHYFELT 160 (224)
T ss_dssp CTTEEEEEESTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEECCCHHHH
T ss_pred CCCcEEeecccccCcchhhhcchHHHHHHHHhhcCcceEEeeechhhh
Confidence 45569999999999999887766554432 3467899999986553
|
| >d1u0la2 c.37.1.8 (A:69-293) Probable GTPase EngC (YjeQ), C-terminal domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngC (YjeQ), C-terminal domain species: Thermotoga maritima [TaxId: 2336]
Probab=96.58 E-value=0.00057 Score=69.37 Aligned_cols=34 Identities=29% Similarity=0.376 Sum_probs=26.9
Q ss_pred CCeEEEEEcCCCCChHHHHHHHhCCCCCCCcEEE
Q 037346 385 HGMRVAVCGTVGSGKSSCLSCILGGVPKESGIIR 418 (1156)
Q Consensus 385 ~g~~~~ivG~~GsGKSTll~~i~g~~~~~~G~i~ 418 (1156)
+|+.++++|+||+|||||+|.|.|......|.|.
T Consensus 94 ~~kt~~~~G~SGVGKSTLiN~L~~~~~~~T~~vs 127 (225)
T d1u0la2 94 KGKISTMAGLSGVGKSSLLNAINPGLKLRVSEVS 127 (225)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHSTTCCCC-----
T ss_pred cCCeEEEECCCCCCHHHHHHhhcchhhhhccCcc
Confidence 6999999999999999999999998776667664
|
| >d1znwa1 c.37.1.1 (A:20-201) Guanylate kinase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=96.40 E-value=0.00056 Score=67.72 Aligned_cols=27 Identities=30% Similarity=0.623 Sum_probs=24.7
Q ss_pred CeEEEEEcCCCCChHHHHHHHhCCCCC
Q 037346 386 GMRVAVCGTVGSGKSSCLSCILGGVPK 412 (1156)
Q Consensus 386 g~~~~ivG~~GsGKSTll~~i~g~~~~ 412 (1156)
|.+++|+||+|||||||++.|...++.
T Consensus 2 G~iivl~GpsG~GK~tl~~~L~~~~~~ 28 (182)
T d1znwa1 2 GRVVVLSGPSAVGKSTVVRCLRERIPN 28 (182)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHSTT
T ss_pred CeEEEEECCCCCCHHHHHHHHHhhCCC
Confidence 889999999999999999999887763
|
| >d2i3ba1 c.37.1.11 (A:1-189) Cancer-related NTPase, C1orf57 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Cancer-related NTPase, C1orf57 species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.34 E-value=0.00044 Score=67.99 Aligned_cols=30 Identities=17% Similarity=0.188 Sum_probs=25.5
Q ss_pred EEEEEcCCCCChHHHHHHHhCCCCCCCcEE
Q 037346 388 RVAVCGTVGSGKSSCLSCILGGVPKESGII 417 (1156)
Q Consensus 388 ~~~ivG~~GsGKSTll~~i~g~~~~~~G~i 417 (1156)
.+.|+||+|||||||++.+.+.+....+.+
T Consensus 3 ~v~ItG~~GtGKTtl~~~i~~~l~~~~~~v 32 (189)
T d2i3ba1 3 HVFLTGPPGVGKTTLIHKASEVLKSSGVPV 32 (189)
T ss_dssp CEEEESCCSSCHHHHHHHHHHHHHHTTCCC
T ss_pred EEEEECCCCCcHHHHHHHHHHHHHHCCCEE
Confidence 588999999999999999999887655444
|
| >d1zp6a1 c.37.1.25 (A:6-181) Hypothetical protein Atu3015 {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Atu3015-like domain: Hypothetical protein Atu3015 species: Agrobacterium tumefaciens [TaxId: 358]
Probab=96.17 E-value=0.0013 Score=64.01 Aligned_cols=26 Identities=27% Similarity=0.311 Sum_probs=24.2
Q ss_pred CCeEEEEEcCCCCChHHHHHHHhCCC
Q 037346 385 HGMRVAVCGTVGSGKSSCLSCILGGV 410 (1156)
Q Consensus 385 ~g~~~~ivG~~GsGKSTll~~i~g~~ 410 (1156)
.|++++|+||+||||||+.+.|...+
T Consensus 3 ~g~iI~l~G~~GsGKSTia~~La~~l 28 (176)
T d1zp6a1 3 GGNILLLSGHPGSGKSTIAEALANLP 28 (176)
T ss_dssp TTEEEEEEECTTSCHHHHHHHHHTCS
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 58999999999999999999999865
|
| >d1np6a_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB species: Escherichia coli [TaxId: 562]
Probab=96.12 E-value=0.00065 Score=65.88 Aligned_cols=25 Identities=20% Similarity=0.296 Sum_probs=22.3
Q ss_pred EEEEEcCCCCChHHHHHHHhCCCCC
Q 037346 388 RVAVCGTVGSGKSSCLSCILGGVPK 412 (1156)
Q Consensus 388 ~~~ivG~~GsGKSTll~~i~g~~~~ 412 (1156)
+++|+|++|||||||++.|+..+..
T Consensus 4 vi~itG~~GSGKTTL~~~L~~~l~~ 28 (170)
T d1np6a_ 4 LLAFAAWSGTGKTTLLKKLIPALCA 28 (170)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHHH
Confidence 6899999999999999999976653
|
| >d1tf7a2 c.37.1.11 (A:256-497) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Circadian clock protein KaiC species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]
Probab=96.09 E-value=0.011 Score=60.62 Aligned_cols=34 Identities=21% Similarity=0.364 Sum_probs=27.7
Q ss_pred ccccceEE--eeCCeEEEEEcCCCCChHHHHHHHhCC
Q 037346 375 TLRNINLK--VFHGMRVAVCGTVGSGKSSCLSCILGG 409 (1156)
Q Consensus 375 ~l~~i~l~--i~~g~~~~ivG~~GsGKSTll~~i~g~ 409 (1156)
-|+.+ +. +++|+++.|.|++|||||||+.-++-.
T Consensus 14 ~LD~~-l~GGi~~gsl~li~G~pGsGKT~l~~qia~~ 49 (242)
T d1tf7a2 14 RLDEM-CGGGFFKDSIILATGATGTGKTLLVSRFVEN 49 (242)
T ss_dssp HHHHH-TTSSEESSCEEEEEECTTSSHHHHHHHHHHH
T ss_pred HHHHh-hcCCCcCCeEEEEEeCCCCCHHHHHHHHHHH
Confidence 35444 33 889999999999999999999877654
|
| >d1t9ha2 c.37.1.8 (A:68-298) Probable GTPase EngC (YjeQ), C-terminal domain {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngC (YjeQ), C-terminal domain species: Bacillus subtilis [TaxId: 1423]
Probab=96.08 E-value=0.00053 Score=69.82 Aligned_cols=34 Identities=26% Similarity=0.302 Sum_probs=22.9
Q ss_pred CCeEEEEEcCCCCChHHHHHHHhCCCCCCCcEEE
Q 037346 385 HGMRVAVCGTVGSGKSSCLSCILGGVPKESGIIR 418 (1156)
Q Consensus 385 ~g~~~~ivG~~GsGKSTll~~i~g~~~~~~G~i~ 418 (1156)
+|+.++++|+||+|||||+|.|+|......|.|.
T Consensus 96 ~~~~~vl~G~SGVGKSSLiN~L~~~~~~~t~~vs 129 (231)
T d1t9ha2 96 QDKTTVFAGQSGVGKSSLLNAISPELGLRTNEIS 129 (231)
T ss_dssp TTSEEEEEESHHHHHHHHHHHHCC----------
T ss_pred ccceEEEECCCCccHHHHHHhhccHhHhhhcccc
Confidence 5889999999999999999999998776666664
|
| >d1g6oa_ c.37.1.11 (A:) Hexameric traffic ATPase, HP0525 {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hexameric traffic ATPase, HP0525 species: Helicobacter pylori [TaxId: 210]
Probab=96.06 E-value=0.0017 Score=70.22 Aligned_cols=83 Identities=19% Similarity=0.284 Sum_probs=49.6
Q ss_pred CceeeCCCCCCHHHHHHHHhhcccCCCceEEEcCeeCCCCChHHHhhcCeeeccccc----cccccchhccCC--CCCCC
Q 037346 962 PLVLRGRTGSGKSTLIQTLFRIVESTAGHILIDGKDISLIGLHDLRTRLSIIPQDPT----MFEGTTRSNLDP--LEEHA 1035 (1156)
Q Consensus 962 ~~vL~G~SGsGKSTL~~lL~rl~~p~~G~I~idG~di~~i~~~~LR~~i~~VpQdp~----LF~gTIr~Nl~~--~~~~~ 1035 (1156)
.+++.|+|||||||++++|+++.+|..=-|.| .|..++.+..-++.+.+-.+..+ ++...+|.+-|. .++.-
T Consensus 168 nili~G~tgSGKTT~l~al~~~i~~~~rivti--Ed~~El~l~~~~~~~~~~~~~~~~~~~ll~~~lR~~pd~iivgEiR 245 (323)
T d1g6oa_ 168 NVIVCGGTGSGKTTYIKSIMEFIPKEERIISI--EDTEEIVFKHHKNYTQLFFGGNITSADCLKSCLRMRPDRIILGELR 245 (323)
T ss_dssp CEEEEESTTSSHHHHHHHHGGGSCTTCCEEEE--ESSCCCCCSSCSSEEEEECBTTBCHHHHHHHHTTSCCSEEEESCCC
T ss_pred CEEEEeeccccchHHHHHHhhhcccccceeec--cchhhhhcccccccceeccccchhHHHHHHHHhccCCCcccCCccC
Confidence 35778999999999999999999987766777 44555554332333333333221 223344444331 23444
Q ss_pred HHHHHHHHHHc
Q 037346 1036 DEQIWEALDKC 1046 (1156)
Q Consensus 1036 deei~~al~~~ 1046 (1156)
+.|.+++++.+
T Consensus 246 ~~ea~~~l~a~ 256 (323)
T d1g6oa_ 246 SSEAYDFYNVL 256 (323)
T ss_dssp STHHHHHHHHH
T ss_pred chhHHHHHHHH
Confidence 55666777655
|
| >d1qhla_ c.37.1.12 (A:) Cell division protein MukB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Cell division protein MukB species: Escherichia coli [TaxId: 562]
Probab=96.05 E-value=0.00014 Score=73.04 Aligned_cols=32 Identities=16% Similarity=0.241 Sum_probs=27.8
Q ss_pred ccccceEEeeCCeEEEEEcCCCCChHHHHHHHh
Q 037346 375 TLRNINLKVFHGMRVAVCGTVGSGKSSCLSCIL 407 (1156)
Q Consensus 375 ~l~~i~l~i~~g~~~~ivG~~GsGKSTll~~i~ 407 (1156)
.+++.++++.+| +++|+|||||||||++.+|.
T Consensus 14 ~~~~~~i~f~~~-~tvi~G~NGsGKStil~Ai~ 45 (222)
T d1qhla_ 14 GFFARTFDLDEL-VTTLSGGNGAGKSTTMAAFV 45 (222)
T ss_dssp TEEEEEECHHHH-HHHHHSCCSHHHHHHHHHHH
T ss_pred CEeeEEEEcCCC-eEEEECCCCCCHHHHHHHHH
Confidence 357778888776 99999999999999999986
|
| >d1ixza_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: AAA domain of cell division protein FtsH species: Thermus thermophilus [TaxId: 274]
Probab=95.98 E-value=0.0073 Score=62.47 Aligned_cols=22 Identities=27% Similarity=0.443 Sum_probs=19.7
Q ss_pred ceeeCCCCCCHHHHHHHHhhcc
Q 037346 963 LVLRGRTGSGKSTLIQTLFRIV 984 (1156)
Q Consensus 963 ~vL~G~SGsGKSTL~~lL~rl~ 984 (1156)
+.|.||+|+|||+++++|.+..
T Consensus 45 iLl~GppGtGKT~la~aia~~~ 66 (247)
T d1ixza_ 45 VLLVGPPGVGKTHLARAVAGEA 66 (247)
T ss_dssp EEEECCTTSSHHHHHHHHHHHT
T ss_pred EEEecCCCCChhHHHHHHHHHc
Confidence 4788999999999999999864
|
| >d1sxje2 c.37.1.20 (E:4-255) Replication factor C5 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C5 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=95.97 E-value=0.011 Score=60.90 Aligned_cols=45 Identities=11% Similarity=0.375 Sum_probs=34.9
Q ss_pred cCCCEEEEecCCcCCCHHHHHHHHHHHHHhcCCceEEEeecCcccc
Q 037346 1068 KKSKVLVLDEATASVDTATDNQIQQTLRQHFSDCTVVTIAHRITSV 1113 (1156)
Q Consensus 1068 r~~~ILiLDEaTS~LD~~te~~I~~~l~~~~~~~TvI~IaHrl~ti 1113 (1156)
.+.+++|+||+- .|..+....+.+.+.+...++.+|++|++++-+
T Consensus 130 ~~~~iiiide~d-~l~~~~~~~l~~~~e~~~~~~~~Il~tn~~~~i 174 (252)
T d1sxje2 130 HRYKCVIINEAN-SLTKDAQAALRRTMEKYSKNIRLIMVCDSMSPI 174 (252)
T ss_dssp -CCEEEEEECTT-SSCHHHHHHHHHHHHHSTTTEEEEEEESCSCSS
T ss_pred CCceEEEecccc-ccccccchhhhcccccccccccceeeeccccch
Confidence 356799999996 478888888888887766667789999987644
|
| >d2i3ba1 c.37.1.11 (A:1-189) Cancer-related NTPase, C1orf57 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Cancer-related NTPase, C1orf57 species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.95 E-value=0.00053 Score=67.37 Aligned_cols=65 Identities=15% Similarity=0.108 Sum_probs=42.4
Q ss_pred ceeeCCCCCCHHHHHHHHhhcccCCCceEEEcCeeCCCCChHHHhhcCeeeccccccccccchhc
Q 037346 963 LVLRGRTGSGKSTLIQTLFRIVESTAGHILIDGKDISLIGLHDLRTRLSIIPQDPTMFEGTTRSN 1027 (1156)
Q Consensus 963 ~vL~G~SGsGKSTL~~lL~rl~~p~~G~I~idG~di~~i~~~~LR~~i~~VpQdp~LF~gTIr~N 1027 (1156)
+.|.|++|+|||||++.+.+.+....+.+.+.+.+........+...+.-+.|+...+.....++
T Consensus 4 v~ItG~~GtGKTtl~~~i~~~l~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 68 (189)
T d2i3ba1 4 VFLTGPPGVGKTTLIHKASEVLKSSGVPVDGFYTEEVRQGGRRIGFDVVTLSGTRGPLSRVGLEP 68 (189)
T ss_dssp EEEESCCSSCHHHHHHHHHHHHHHTTCCCEEEECCEEETTSSEEEEEEEETTSCEEEEEECCCCC
T ss_pred EEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEEeccccccccccccccccccchhhhhhhhhhhh
Confidence 57889999999999999999998887777666655443333333333444555554443333333
|
| >d1nlfa_ c.37.1.11 (A:) Hexameric replicative helicase repA {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hexameric replicative helicase repA species: Escherichia coli [TaxId: 562]
Probab=95.93 E-value=0.013 Score=61.27 Aligned_cols=24 Identities=25% Similarity=0.198 Sum_probs=21.2
Q ss_pred eCCeEEEEEcCCCCChHHHHHHHh
Q 037346 384 FHGMRVAVCGTVGSGKSSCLSCIL 407 (1156)
Q Consensus 384 ~~g~~~~ivG~~GsGKSTll~~i~ 407 (1156)
.+|+++.|.|++|+|||||+..|+
T Consensus 27 ~pg~~~~i~G~~G~GKS~l~l~la 50 (274)
T d1nlfa_ 27 VAGTVGALVSPGGAGKSMLALQLA 50 (274)
T ss_dssp ETTSEEEEEESTTSSHHHHHHHHH
T ss_pred cCCcEEEEEeCCCCCHHHHHHHHH
Confidence 469999999999999999997654
|
| >d2gj8a1 c.37.1.8 (A:216-376) Probable tRNA modification GTPase TrmE (MnmE), G domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable tRNA modification GTPase TrmE (MnmE), G domain species: Escherichia coli [TaxId: 562]
Probab=95.93 E-value=0.018 Score=54.67 Aligned_cols=24 Identities=42% Similarity=0.724 Sum_probs=21.6
Q ss_pred CeEEEEEcCCCCChHHHHHHHhCC
Q 037346 386 GMRVAVCGTVGSGKSSCLSCILGG 409 (1156)
Q Consensus 386 g~~~~ivG~~GsGKSTll~~i~g~ 409 (1156)
|=.++++|++|+|||||++.|.|.
T Consensus 1 ~~kI~lvG~~nvGKSsLin~l~~~ 24 (161)
T d2gj8a1 1 GMKVVIAGRPNAGKSSLLNALAGR 24 (161)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHTS
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 346899999999999999999976
|
| >d1p9ra_ c.37.1.11 (A:) Extracellular secretion NTPase EpsE {Vibrio cholerae [TaxId: 666]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Extracellular secretion NTPase EpsE species: Vibrio cholerae [TaxId: 666]
Probab=95.79 E-value=0.0067 Score=67.52 Aligned_cols=109 Identities=18% Similarity=0.116 Sum_probs=68.8
Q ss_pred eCCeEEEEEcCCCCChHHHHHHHhCCCCCCCcE-EEEcCeEEEEecCCcCCCccHHHHhhcCCCCCHHHHHHHHHHhCCc
Q 037346 384 FHGMRVAVCGTVGSGKSSCLSCILGGVPKESGI-IRLCGTKAYVAQSPWIQSGKIEENILFGKEMDRERYERVLEACSLK 462 (1156)
Q Consensus 384 ~~g~~~~ivG~~GsGKSTll~~i~g~~~~~~G~-i~~~g~~~~v~Q~~~~~~~ti~eni~~~~~~~~~~~~~~~~~~~l~ 462 (1156)
.++-++.|.||+||||||.+.+++..++..... +.+. +|.=+ ..+
T Consensus 156 ~~~GliLvtGpTGSGKSTTl~~~l~~~~~~~~~i~tiE--------dPiE~----------~~~---------------- 201 (401)
T d1p9ra_ 156 RPHGIILVTGPTGSGKSTTLYAGLQELNSSERNILTVE--------DPIEF----------DID---------------- 201 (401)
T ss_dssp SSSEEEEEECSTTSCHHHHHHHHHHHHCCTTSCEEEEE--------SSCCS----------CCS----------------
T ss_pred hhhceEEEEcCCCCCccHHHHHHhhhhcCCCceEEEec--------cCccc----------ccC----------------
Confidence 467799999999999999999999987543333 2222 22100 000
Q ss_pred hhhhhCCCCCccccc-cCCCCCCHHHHHHHHHHHhhccCCCeeeeeCCCCCcCHHHHHHHHHHHHhcCCCEEEEEccCCC
Q 037346 463 KDLEVLPFGDQTIIG-ERGINLSGGQKQRIQIARPLYQDADIFLLDDPFSPVDDHTGAHLFKFCWVSSSKTVIYATHQVE 541 (1156)
Q Consensus 463 ~~~~~~~~g~~t~v~-~~g~~LSgGqkqRi~lAral~~~~~illlDep~s~lD~~~~~~i~~~~~~~~~~tvi~vtH~~~ 541 (1156)
.-.++.+. +.+.+ ---+|..+|=+|||++++.|.- |+++....++.. ..|..|+-.-|--+
T Consensus 202 -------~~~q~~v~~~~~~~------~~~~l~~~lR~dPDvi~igEiR---d~~ta~~a~~aa--~tGhlV~tTlHa~~ 263 (401)
T d1p9ra_ 202 -------GIGQTQVNPRVDMT------FARGLRAILRQDPDVVMVGEIR---DLETAQIAVQAS--LTGHLVMSTLHTNT 263 (401)
T ss_dssp -------SSEEEECBGGGTBC------HHHHHHHHGGGCCSEEEESCCC---SHHHHHHHHHHH--HTTCEEEEEECCSS
T ss_pred -------CCCeeeecCCcCCC------HHHHHHHHHhhcCCEEEecCcC---ChHHHHHHHHHH--hcCCeEEEEeccCc
Confidence 00000110 11111 3345677888999999999998 888887666544 46888888888765
Q ss_pred ccc
Q 037346 542 FLP 544 (1156)
Q Consensus 542 ~~~ 544 (1156)
...
T Consensus 264 a~~ 266 (401)
T d1p9ra_ 264 AVG 266 (401)
T ss_dssp SHH
T ss_pred hHh
Confidence 443
|
| >d1s96a_ c.37.1.1 (A:) Guanylate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Escherichia coli [TaxId: 562]
Probab=95.67 E-value=0.0021 Score=64.80 Aligned_cols=27 Identities=33% Similarity=0.504 Sum_probs=24.5
Q ss_pred CCeEEEEEcCCCCChHHHHHHHhCCCC
Q 037346 385 HGMRVAVCGTVGSGKSSCLSCILGGVP 411 (1156)
Q Consensus 385 ~g~~~~ivG~~GsGKSTll~~i~g~~~ 411 (1156)
+|.+++|+||||||||||.+.|+-..|
T Consensus 1 ~G~livi~GPSG~GK~tl~~~L~~~~p 27 (205)
T d1s96a_ 1 QGTLYIVSAPSGAGKSSLIQALLKTQP 27 (205)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHSC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHhhCC
Confidence 589999999999999999999987765
|
| >d2dy1a2 c.37.1.8 (A:8-274) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus, EF-G-2 [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor G (EF-G), N-terminal (G) domain species: Thermus thermophilus, EF-G-2 [TaxId: 274]
Probab=95.66 E-value=0.011 Score=61.58 Aligned_cols=99 Identities=18% Similarity=0.180 Sum_probs=61.8
Q ss_pred ceeeCCCCCCHHHHHHHHhhcc--cCCCceEEEcCeeCCCCChHHHhhcCeeeccccccccccchhcc--CCCCCCCHHH
Q 037346 963 LVLRGRTGSGKSTLIQTLFRIV--ESTAGHILIDGKDISLIGLHDLRTRLSIIPQDPTMFEGTTRSNL--DPLEEHADEQ 1038 (1156)
Q Consensus 963 ~vL~G~SGsGKSTL~~lL~rl~--~p~~G~I~idG~di~~i~~~~LR~~i~~VpQdp~LF~gTIr~Nl--~~~~~~~dee 1038 (1156)
+++.|..|||||||+..|+..- ....|++. +|..+.+...++-.+++++-+.-..+--..-+-|+ .|+...=-.|
T Consensus 5 v~iiGh~~~GKTtL~e~ll~~~g~~~~~g~v~-~g~~~~D~~~~E~~r~~ti~~~~~~~~~~~~~~n~iDtPGh~dF~~e 83 (267)
T d2dy1a2 5 VALVGHAGSGKTTLTEALLYKTGAKERRGRVE-EGTTTTDYTPEAKLHRTTVRTGVAPLLFRGHRVFLLDAPGYGDFVGE 83 (267)
T ss_dssp EEEEESTTSSHHHHHHHHHHHTTSSSSCCCGG-GTCCSSCCSHHHHHTTSCCSCEEEEEEETTEEEEEEECCCSGGGHHH
T ss_pred EEEEcCCCCcHHHHHHHHHHHcCCchhhccch-hccccccchHHHHHhCCeEEeecccccccccceeEEccCchhhhhhh
Confidence 4688999999999999995432 12455554 67778888888888888876654433222334565 3554322367
Q ss_pred HHHHHHHcCCChHHHhhcCCcccc
Q 037346 1039 IWEALDKCQLGDEVRKKKGKLDSQ 1062 (1156)
Q Consensus 1039 i~~al~~~~l~~~i~~lp~gl~s~ 1062 (1156)
+..+++.+...=.+-.-..|...+
T Consensus 84 ~~~al~~~D~avlvvda~~Gv~~~ 107 (267)
T d2dy1a2 84 IRGALEAADAALVAVSAEAGVQVG 107 (267)
T ss_dssp HHHHHHHCSEEEEEEETTTCSCHH
T ss_pred hhhhhcccCceEEEeeccCCccch
Confidence 777888775433333333444433
|
| >d1cr2a_ c.37.1.11 (A:) Gene 4 protein (g4p, DNA primase), helicase domain {Bacteriophage T7 [TaxId: 10760]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Gene 4 protein (g4p, DNA primase), helicase domain species: Bacteriophage T7 [TaxId: 10760]
Probab=95.66 E-value=0.0077 Score=63.32 Aligned_cols=36 Identities=19% Similarity=0.142 Sum_probs=29.6
Q ss_pred CCccccceEEeeCCeEEEEEcCCCCChHHHHHHHhC
Q 037346 373 NPTLRNINLKVFHGMRVAVCGTVGSGKSSCLSCILG 408 (1156)
Q Consensus 373 ~~~l~~i~l~i~~g~~~~ivG~~GsGKSTll~~i~g 408 (1156)
-+-|+++.-=+.+|+++.|.|++|+|||||+.-++-
T Consensus 22 ~~~lD~~~~G~~~G~l~vi~G~~G~GKT~~~~~la~ 57 (277)
T d1cr2a_ 22 CTGINDKTLGARGGEVIMVTSGSGMGKSTFVRQQAL 57 (277)
T ss_dssp CTTHHHHHCSBCTTCEEEEECSTTSSHHHHHHHHHH
T ss_pred chhHHHHhcCCCCCeEEEEEeCCCCCHHHHHHHHHH
Confidence 345776655589999999999999999999877763
|
| >d1lv7a_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: AAA domain of cell division protein FtsH species: Escherichia coli [TaxId: 562]
Probab=95.64 E-value=0.0099 Score=61.73 Aligned_cols=23 Identities=22% Similarity=0.460 Sum_probs=20.6
Q ss_pred ceeeCCCCCCHHHHHHHHhhccc
Q 037346 963 LVLRGRTGSGKSTLIQTLFRIVE 985 (1156)
Q Consensus 963 ~vL~G~SGsGKSTL~~lL~rl~~ 985 (1156)
+.|.||+|||||++++.|++.+.
T Consensus 48 iLL~GppGtGKT~la~~iA~~~~ 70 (256)
T d1lv7a_ 48 VLMVGPPGTGKTLLAKAIAGEAK 70 (256)
T ss_dssp EEEECCTTSCHHHHHHHHHHHHT
T ss_pred EEeeCCCCCCccHHHHHHHHHcC
Confidence 57889999999999999998764
|
| >d1xjca_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB species: Bacillus stearothermophilus [TaxId: 1422]
Probab=95.63 E-value=0.0014 Score=63.51 Aligned_cols=26 Identities=19% Similarity=0.178 Sum_probs=23.0
Q ss_pred eEEEEEcCCCCChHHHHHHHhCCCCC
Q 037346 387 MRVAVCGTVGSGKSSCLSCILGGVPK 412 (1156)
Q Consensus 387 ~~~~ivG~~GsGKSTll~~i~g~~~~ 412 (1156)
++++|+|++|||||||++.|+..+..
T Consensus 2 kii~I~G~~gSGKTTli~~l~~~L~~ 27 (165)
T d1xjca_ 2 NVWQVVGYKHSGKTTLMEKWVAAAVR 27 (165)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred cEEEEEeCCCCCHHHHHHHHHHHHHh
Confidence 37899999999999999999887764
|
| >d1knqa_ c.37.1.17 (A:) Gluconate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Gluconate kinase domain: Gluconate kinase species: Escherichia coli [TaxId: 562]
Probab=95.60 E-value=0.0028 Score=61.23 Aligned_cols=27 Identities=26% Similarity=0.272 Sum_probs=24.1
Q ss_pred eCCeEEEEEcCCCCChHHHHHHHhCCC
Q 037346 384 FHGMRVAVCGTVGSGKSSCLSCILGGV 410 (1156)
Q Consensus 384 ~~g~~~~ivG~~GsGKSTll~~i~g~~ 410 (1156)
+++.++.|+|++||||||+.+.|...+
T Consensus 4 ~~~~iivl~G~~GsGKsT~a~~La~~l 30 (171)
T d1knqa_ 4 HDHHIYVLMGVSGSGKSAVASEVAHQL 30 (171)
T ss_dssp TTSEEEEEECSTTSCHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 467899999999999999999998754
|
| >d1m8pa3 c.37.1.15 (A:391-573) ATP sulfurylase C-terminal domain {Fungus (Penicillium chrysogenum) [TaxId: 5076]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ATP sulfurylase C-terminal domain domain: ATP sulfurylase C-terminal domain species: Fungus (Penicillium chrysogenum) [TaxId: 5076]
Probab=95.58 E-value=0.0028 Score=61.62 Aligned_cols=27 Identities=19% Similarity=0.322 Sum_probs=24.1
Q ss_pred eCCeEEEEEcCCCCChHHHHHHHhCCC
Q 037346 384 FHGMRVAVCGTVGSGKSSCLSCILGGV 410 (1156)
Q Consensus 384 ~~g~~~~ivG~~GsGKSTll~~i~g~~ 410 (1156)
++|-++.|+|++||||||+.+.|..-+
T Consensus 4 ~~g~~I~l~G~~GsGKTTia~~La~~L 30 (183)
T d1m8pa3 4 TQGFTIFLTGYMNSGKDAIARALQVTL 30 (183)
T ss_dssp TCCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 478999999999999999999998554
|
| >d1cr2a_ c.37.1.11 (A:) Gene 4 protein (g4p, DNA primase), helicase domain {Bacteriophage T7 [TaxId: 10760]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Gene 4 protein (g4p, DNA primase), helicase domain species: Bacteriophage T7 [TaxId: 10760]
Probab=95.57 E-value=0.0016 Score=68.85 Aligned_cols=55 Identities=16% Similarity=0.125 Sum_probs=34.6
Q ss_pred HHHHHhhcCCCCCcccccCCCCCCCCCCCCeEEEEEEEEEEcCCCCceeeCCCCCCHHHHHHHHhh
Q 037346 917 ERILQCACIPSEPALVIEATKPNNSRPSHGEVNIRHLQVRYAPNLPLVLRGRTGSGKSTLIQTLFR 982 (1156)
Q Consensus 917 ~Ri~~~~~~~~e~~~~~~~~~~~~~~p~~g~I~~~~Vsf~Y~~~~~~vL~G~SGsGKSTL~~lL~r 982 (1156)
||+.++..-+++.. ..+..||. ++++...+++++-.+|.|+||+||||++.-++.
T Consensus 3 e~~~~~~~~~~~~~------~i~TG~~~-----lD~~~~G~~~G~l~vi~G~~G~GKT~~~~~la~ 57 (277)
T d1cr2a_ 3 ERIREHLSSEESVG------LLFSGCTG-----INDKTLGARGGEVIMVTSGSGMGKSTFVRQQAL 57 (277)
T ss_dssp HHHHHHHTSCCCSC------BCCCSCTT-----HHHHHCSBCTTCEEEEECSTTSSHHHHHHHHHH
T ss_pred HHHHHHHhCCCCcc------ccCCCchh-----HHHHhcCCCCCeEEEEEeCCCCCHHHHHHHHHH
Confidence 67777665443321 12334552 333333456777677889999999999887764
|
| >d1ly1a_ c.37.1.1 (A:) Polynucleotide kinase, kinase domain {Bacteriophage T4 [TaxId: 10665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Polynucleotide kinase, kinase domain species: Bacteriophage T4 [TaxId: 10665]
Probab=95.39 E-value=0.0036 Score=59.27 Aligned_cols=23 Identities=26% Similarity=0.312 Sum_probs=20.1
Q ss_pred eEEEEEcCCCCChHHHHHHHhCC
Q 037346 387 MRVAVCGTVGSGKSSCLSCILGG 409 (1156)
Q Consensus 387 ~~~~ivG~~GsGKSTll~~i~g~ 409 (1156)
+++.|+|++||||||+.+.|...
T Consensus 3 klIii~G~pGsGKTTla~~L~~~ 25 (152)
T d1ly1a_ 3 KIILTIGCPGSGKSTWAREFIAK 25 (152)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHh
Confidence 57899999999999999988643
|
| >d1svia_ c.37.1.8 (A:) Probable GTPase EngB {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngB species: Bacillus subtilis [TaxId: 1423]
Probab=95.35 E-value=0.0027 Score=63.17 Aligned_cols=22 Identities=27% Similarity=0.534 Sum_probs=20.7
Q ss_pred EEEEEcCCCCChHHHHHHHhCC
Q 037346 388 RVAVCGTVGSGKSSCLSCILGG 409 (1156)
Q Consensus 388 ~~~ivG~~GsGKSTll~~i~g~ 409 (1156)
.++|+|++|+|||||++.|.|.
T Consensus 25 ~I~lvG~~n~GKSTLin~L~g~ 46 (195)
T d1svia_ 25 EIALAGRSNVGKSSFINSLINR 46 (195)
T ss_dssp EEEEEEBTTSSHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHhcCC
Confidence 4999999999999999999985
|
| >d1iqpa2 c.37.1.20 (A:2-232) Replication factor C {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=95.35 E-value=0.0041 Score=63.65 Aligned_cols=46 Identities=15% Similarity=0.312 Sum_probs=31.8
Q ss_pred cCCCEEEEecCCcCCCHHHHHHHHHHHHHhcCCceEEEeecCccccc
Q 037346 1068 KKSKVLVLDEATASVDTATDNQIQQTLRQHFSDCTVVTIAHRITSVL 1114 (1156)
Q Consensus 1068 r~~~ILiLDEaTS~LD~~te~~I~~~l~~~~~~~TvI~IaHrl~ti~ 1114 (1156)
.++.|+++||.= .+-......+...+......+.+|.++++.+.+.
T Consensus 108 ~~~~iilide~d-~~~~~~~~~ll~~l~~~~~~~~~i~~~n~~~~i~ 153 (231)
T d1iqpa2 108 ASFKIIFLDEAD-ALTQDAQQALRRTMEMFSSNVRFILSCNYSSKII 153 (231)
T ss_dssp CSCEEEEEETGG-GSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSC
T ss_pred CCceEEeehhhh-hcchhHHHHHhhhcccCCcceEEEeccCChhhch
Confidence 467899999973 3344445556667766666778888888876553
|
| >d1y63a_ c.37.1.1 (A:) Probable kinase LmjF30.1890 {Leishmania major [TaxId: 5664]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Probable kinase LmjF30.1890 species: Leishmania major [TaxId: 5664]
Probab=95.33 E-value=0.004 Score=60.27 Aligned_cols=28 Identities=29% Similarity=0.482 Sum_probs=24.6
Q ss_pred eCCeEEEEEcCCCCChHHHHHHHhCCCC
Q 037346 384 FHGMRVAVCGTVGSGKSSCLSCILGGVP 411 (1156)
Q Consensus 384 ~~g~~~~ivG~~GsGKSTll~~i~g~~~ 411 (1156)
|+|-.++|.||+||||||+.+.|...+.
T Consensus 3 pk~~~I~i~G~~GsGKTT~~~~La~~l~ 30 (174)
T d1y63a_ 3 PKGINILITGTPGTGKTSMAEMIAAELD 30 (174)
T ss_dssp CSSCEEEEECSTTSSHHHHHHHHHHHST
T ss_pred CCCCEEEEEeCCCCCHHHHHHHHHHHhC
Confidence 5677899999999999999999987653
|
| >d1lw7a2 c.37.1.1 (A:220-411) Transcriptional regulator NadR, ribosylnicotinamide kinase domain {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Transcriptional regulator NadR, ribosylnicotinamide kinase domain species: Haemophilus influenzae [TaxId: 727]
Probab=95.29 E-value=0.0031 Score=61.57 Aligned_cols=24 Identities=29% Similarity=0.284 Sum_probs=22.0
Q ss_pred eEEEEEcCCCCChHHHHHHHhCCC
Q 037346 387 MRVAVCGTVGSGKSSCLSCILGGV 410 (1156)
Q Consensus 387 ~~~~ivG~~GsGKSTll~~i~g~~ 410 (1156)
+.++|+||+|||||||.+.|...+
T Consensus 8 K~I~i~G~~GsGKTTla~~La~~~ 31 (192)
T d1lw7a2 8 KTVAILGGESSGKSVLVNKLAAVF 31 (192)
T ss_dssp EEEEEECCTTSHHHHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 579999999999999999999765
|
| >d1g6oa_ c.37.1.11 (A:) Hexameric traffic ATPase, HP0525 {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hexameric traffic ATPase, HP0525 species: Helicobacter pylori [TaxId: 210]
Probab=95.26 E-value=0.0035 Score=67.63 Aligned_cols=34 Identities=41% Similarity=0.713 Sum_probs=28.6
Q ss_pred eeCCeEEEEEcCCCCChHHHHHHHhCCCCCCCcE
Q 037346 383 VFHGMRVAVCGTVGSGKSSCLSCILGGVPKESGI 416 (1156)
Q Consensus 383 i~~g~~~~ivG~~GsGKSTll~~i~g~~~~~~G~ 416 (1156)
++.|.-+.|+|++||||||++++|++++++..=-
T Consensus 163 v~~~~nili~G~tgSGKTT~l~al~~~i~~~~ri 196 (323)
T d1g6oa_ 163 IAIGKNVIVCGGTGSGKTTYIKSIMEFIPKEERI 196 (323)
T ss_dssp HHHTCCEEEEESTTSSHHHHHHHHGGGSCTTCCE
T ss_pred HHhCCCEEEEeeccccchHHHHHHhhhcccccce
Confidence 4556668999999999999999999999885433
|
| >d2bdta1 c.37.1.25 (A:1-176) Hypothetical protein BH3686 {Bacillus halodurans [TaxId: 86665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Atu3015-like domain: Hypothetical protein BH3686 species: Bacillus halodurans [TaxId: 86665]
Probab=95.25 E-value=0.0033 Score=60.64 Aligned_cols=25 Identities=20% Similarity=0.283 Sum_probs=22.4
Q ss_pred eEEEEEcCCCCChHHHHHHHhCCCC
Q 037346 387 MRVAVCGTVGSGKSSCLSCILGGVP 411 (1156)
Q Consensus 387 ~~~~ivG~~GsGKSTll~~i~g~~~ 411 (1156)
.++.|+||+||||||+.+.|...++
T Consensus 3 klI~i~G~~GsGKTTva~~L~~~~~ 27 (176)
T d2bdta1 3 KLYIITGPAGVGKSTTCKRLAAQLD 27 (176)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHSS
T ss_pred eEEEEECCCCCCHHHHHHHHHHHcC
Confidence 4789999999999999999998764
|
| >d1ewqa2 c.37.1.12 (A:542-765) DNA repair protein MutS, the C-terminal domain {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: DNA repair protein MutS, the C-terminal domain species: Thermus aquaticus [TaxId: 271]
Probab=95.25 E-value=0.024 Score=57.31 Aligned_cols=44 Identities=11% Similarity=0.200 Sum_probs=31.3
Q ss_pred CCCEEEEecCCcCCCHHHHHHHHHHHHHhc--CCceEEEeecCccc
Q 037346 1069 KSKVLVLDEATASVDTATDNQIQQTLRQHF--SDCTVVTIAHRITS 1112 (1156)
Q Consensus 1069 ~~~ILiLDEaTS~LD~~te~~I~~~l~~~~--~~~TvI~IaHrl~t 1112 (1156)
+..++|+||.-.+=|++.-..+-.++-+.+ .+++++++||..+.
T Consensus 114 ~~sLvliDE~~~gT~~~eg~ala~aile~L~~~~~~~i~tTH~~eL 159 (224)
T d1ewqa2 114 ENSLVLLDEVGRGTSSLDGVAIATAVAEALHERRAYTLFATHYFEL 159 (224)
T ss_dssp TTEEEEEESTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEECCCHHH
T ss_pred CCcEEeecccccCcchhhhcchHHHHHHHHhhcCcceEEeeechhh
Confidence 335899999999999977655544433322 37889999998543
|
| >d1a5ta2 c.37.1.20 (A:1-207) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: delta prime subunit of DNA polymerase III, N-domain species: Escherichia coli [TaxId: 562]
Probab=95.24 E-value=0.024 Score=56.71 Aligned_cols=125 Identities=15% Similarity=0.106 Sum_probs=65.8
Q ss_pred ceeeCCCCCCHHHHHHHHhhcccCCCceEEEcCeeCCCCChHHHhhcCeeeccccccccccchhccCCCCCCCHHHHHHH
Q 037346 963 LVLRGRTGSGKSTLIQTLFRIVESTAGHILIDGKDISLIGLHDLRTRLSIIPQDPTMFEGTTRSNLDPLEEHADEQIWEA 1042 (1156)
Q Consensus 963 ~vL~G~SGsGKSTL~~lL~rl~~p~~G~I~idG~di~~i~~~~LR~~i~~VpQdp~LF~gTIr~Nl~~~~~~~deei~~a 1042 (1156)
+.+.||.|+||||+++.+++.+-...+ .+.+........ +..-.-...+-..+... .-.....-++|++.
T Consensus 27 lLl~Gp~G~GKtt~a~~~a~~l~~~~~----~~~~~~~~~~~~-~~i~~~~~~~~~~~~~~-----~~~~~i~~~~ir~l 96 (207)
T d1a5ta2 27 LLIQALPGMGDDALIYALSRYLLCQQP----QGHKSCGHCRGC-QLMQAGTHPDYYTLAPE-----KGKNTLGVDAVREV 96 (207)
T ss_dssp EEEECCTTSCHHHHHHHHHHHHTCSSC----BTTBCCSCSHHH-HHHHHTCCTTEEEECCC-----TTCSSBCHHHHHHH
T ss_pred EEEECCCCCcHHHHHHHHHHhcccccc----cccccccccchh-hhhhhccccccchhhhh-----hcccccccchhhHH
Confidence 467899999999999999987643332 121111111111 00000000111111100 00112335667666
Q ss_pred HHHcCCChHHHhhcCCccccccccccCCCEEEEecCCcCCCHHHHHHHHHHHHHhcCCceEEEeecCcccc
Q 037346 1043 LDKCQLGDEVRKKKGKLDSQGRVLLKKSKVLVLDEATASVDTATDNQIQQTLRQHFSDCTVVTIAHRITSV 1113 (1156)
Q Consensus 1043 l~~~~l~~~i~~lp~gl~s~ARALLr~~~ILiLDEaTS~LD~~te~~I~~~l~~~~~~~TvI~IaHrl~ti 1113 (1156)
.+.+.... .-.+.+|+|+||+= .+..++...+.+.|++-.++...|++|++++.+
T Consensus 97 ~~~~~~~~---------------~~~~~kviIide~d-~l~~~a~n~Llk~lEep~~~~~fIl~t~~~~~l 151 (207)
T d1a5ta2 97 TEKLNEHA---------------RLGGAKVVWVTDAA-LLTDAAANALLKTLEEPPAETWFFLATREPERL 151 (207)
T ss_dssp HHHTTSCC---------------TTSSCEEEEESCGG-GBCHHHHHHHHHHHTSCCTTEEEEEEESCGGGS
T ss_pred hhhhhhcc---------------ccCccceEEechhh-hhhhhhhHHHHHHHHhhcccceeeeeecChhhh
Confidence 55543321 11256899999984 344566667777776654555567789997643
|
| >d1nlfa_ c.37.1.11 (A:) Hexameric replicative helicase repA {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hexameric replicative helicase repA species: Escherichia coli [TaxId: 562]
Probab=95.22 E-value=0.015 Score=60.84 Aligned_cols=41 Identities=17% Similarity=0.319 Sum_probs=26.6
Q ss_pred cCCCEEEEecCCcCC-----CHHHHHHHHHHHHHhc--CCceEEEeec
Q 037346 1068 KKSKVLVLDEATASV-----DTATDNQIQQTLRQHF--SDCTVVTIAH 1108 (1156)
Q Consensus 1068 r~~~ILiLDEaTS~L-----D~~te~~I~~~l~~~~--~~~TvI~IaH 1108 (1156)
.+++++|+|--++.. |......+...++.+. .+||+|+|.|
T Consensus 131 ~~~~lvviD~l~~~~~~~~~~~~~~~~~~~~l~~la~~~~~~vi~v~H 178 (274)
T d1nlfa_ 131 EGRRLMVLDTLRRFHIEEENASGPMAQVIGRMEAIAADTGCSIVFLHH 178 (274)
T ss_dssp TTCSEEEEECGGGGCCSCTTCHHHHHHHHHHHHHHHHHHCCEEEEEEE
T ss_pred cCccEEecCchhhhccccccchhhHHHHHHHHHHHhhcCCCceehhhh
Confidence 578999999765432 3333334555555433 3899999999
|
| >d1qhxa_ c.37.1.3 (A:) Chloramphenicol phosphotransferase {Streptomyces venezuelae [TaxId: 54571]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Chloramphenicol phosphotransferase domain: Chloramphenicol phosphotransferase species: Streptomyces venezuelae [TaxId: 54571]
Probab=95.21 E-value=0.0035 Score=60.67 Aligned_cols=26 Identities=23% Similarity=0.461 Sum_probs=23.5
Q ss_pred CeEEEEEcCCCCChHHHHHHHhCCCC
Q 037346 386 GMRVAVCGTVGSGKSSCLSCILGGVP 411 (1156)
Q Consensus 386 g~~~~ivG~~GsGKSTll~~i~g~~~ 411 (1156)
.+++.|.|++||||||+.+.|...+.
T Consensus 3 ~kiI~l~G~~GsGKsTva~~L~~~l~ 28 (178)
T d1qhxa_ 3 TRMIILNGGSSAGKSGIVRCLQSVLP 28 (178)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHSS
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHcC
Confidence 56899999999999999999998764
|
| >d1np6a_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB species: Escherichia coli [TaxId: 562]
Probab=95.17 E-value=0.0036 Score=60.31 Aligned_cols=30 Identities=20% Similarity=0.308 Sum_probs=23.0
Q ss_pred eeeCCCCCCHHHHHHHHhhcccCCCceEEE
Q 037346 964 VLRGRTGSGKSTLIQTLFRIVESTAGHILI 993 (1156)
Q Consensus 964 vL~G~SGsGKSTL~~lL~rl~~p~~G~I~i 993 (1156)
++.|++|||||||++.|.+-+....-++.+
T Consensus 6 ~itG~~GSGKTTL~~~L~~~l~~~g~~v~v 35 (170)
T d1np6a_ 6 AFAAWSGTGKTTLLKKLIPALCARGIRPGL 35 (170)
T ss_dssp EEECCTTSCHHHHHHHHHHHHHHTTCCEEE
T ss_pred EEEcCCCCCHHHHHHHHHHHHHHCCCeEEE
Confidence 577999999999999999876654333433
|
| >d1p9ra_ c.37.1.11 (A:) Extracellular secretion NTPase EpsE {Vibrio cholerae [TaxId: 666]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Extracellular secretion NTPase EpsE species: Vibrio cholerae [TaxId: 666]
Probab=95.13 E-value=0.017 Score=64.16 Aligned_cols=39 Identities=21% Similarity=0.256 Sum_probs=26.5
Q ss_pred ccccCCCEEEEecCCcCCCHHHHHHHHHHHHHhcCCceEEEeecC
Q 037346 1065 VLLKKSKVLVLDEATASVDTATDNQIQQTLRQHFSDCTVVTIAHR 1109 (1156)
Q Consensus 1065 ALLr~~~ILiLDEaTS~LD~~te~~I~~~l~~~~~~~TvI~IaHr 1109 (1156)
+|=++|+|+++.|.. |.+|.....++-. .|+.|++--|=
T Consensus 223 ~lR~dPDvi~igEiR---d~~ta~~a~~aa~---tGhlV~tTlHa 261 (401)
T d1p9ra_ 223 ILRQDPDVVMVGEIR---DLETAQIAVQASL---TGHLVMSTLHT 261 (401)
T ss_dssp HGGGCCSEEEESCCC---SHHHHHHHHHHHH---TTCEEEEEECC
T ss_pred HHhhcCCEEEecCcC---ChHHHHHHHHHHh---cCCeEEEEecc
Confidence 445689999999998 8888766554432 35556555543
|
| >d1njfa_ c.37.1.20 (A:) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: delta prime subunit of DNA polymerase III, N-domain species: Escherichia coli [TaxId: 562]
Probab=95.09 E-value=0.024 Score=58.01 Aligned_cols=123 Identities=17% Similarity=0.256 Sum_probs=68.2
Q ss_pred ceeeCCCCCCHHHHHHHHhhcccCCCceEEEcCeeCCCCChHHHhhcCeeeccccccccccchhccCCCCCCCHHHHHHH
Q 037346 963 LVLRGRTGSGKSTLIQTLFRIVESTAGHILIDGKDISLIGLHDLRTRLSIIPQDPTMFEGTTRSNLDPLEEHADEQIWEA 1042 (1156)
Q Consensus 963 ~vL~G~SGsGKSTL~~lL~rl~~p~~G~I~idG~di~~i~~~~LR~~i~~VpQdp~LF~gTIr~Nl~~~~~~~deei~~a 1042 (1156)
+.|.||+|+||||+++++.+.+....+ .++.+ .....--+.+ . ++..++ -+ .++..+...-+++.+.
T Consensus 37 ~Ll~Gp~G~GKtt~a~~~~~~l~~~~~---~~~~~---~~~~~~~~~i---~-~~~~~~-~~--~~~~~~~~~i~~ir~~ 103 (239)
T d1njfa_ 37 YLFSGTRGVGKTSIARLLAKGLNCETG---ITATP---CGVCDNCREI---E-QGRFVD-LI--EIDAASRTKVEDTRDL 103 (239)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHHCTTC---SCSSC---CSCSHHHHHH---H-HTCCTT-EE--EEETTCSSSHHHHHHH
T ss_pred EEEECCCCCcHHHHHHHHHHHhcCccc---cccCc---cccchHHHHH---H-cCCCCe-EE--EecchhcCCHHHHHHH
Confidence 467899999999999999887654432 11111 1110000000 0 000000 00 0112222334556655
Q ss_pred HHHcCCChHHHhhcCCccccccccccCCCEEEEecCCcCCCHHHHHHHHHHHHHhcCCceEEEeecCccccc
Q 037346 1043 LDKCQLGDEVRKKKGKLDSQGRVLLKKSKVLVLDEATASVDTATDNQIQQTLRQHFSDCTVVTIAHRITSVL 1114 (1156)
Q Consensus 1043 l~~~~l~~~i~~lp~gl~s~ARALLr~~~ILiLDEaTS~LD~~te~~I~~~l~~~~~~~TvI~IaHrl~ti~ 1114 (1156)
++.+.... .-.+.+|+|+||+=. |+.+....+.+.+++...++.+|++|++.+-+.
T Consensus 104 ~~~~~~~~---------------~~~~~kviiIde~d~-l~~~~q~~Llk~lE~~~~~~~~il~tn~~~~i~ 159 (239)
T d1njfa_ 104 LDNVQYAP---------------ARGRFKVYLIDEVHM-LSRHSFNALLKTLEEPPEHVKFLLATTDPQKLP 159 (239)
T ss_dssp HHSCCCSC---------------SSSSSEEEEEETGGG-SCHHHHHHHHHHHHSCCTTEEEEEEESCGGGSC
T ss_pred HHHHHhcc---------------ccCCCEEEEEECccc-CCHHHHHHHHHHHhcCCCCeEEEEEcCCccccC
Confidence 55443211 112357999999954 777777777788876556778899999976653
|
| >d1rz3a_ c.37.1.6 (A:) Hypothetical protein rbstp0775 {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Hypothetical protein rbstp0775 species: Bacillus stearothermophilus [TaxId: 1422]
Probab=95.08 E-value=0.0045 Score=61.16 Aligned_cols=24 Identities=17% Similarity=0.194 Sum_probs=20.8
Q ss_pred EEEEEcCCCCChHHHHHHHhCCCC
Q 037346 388 RVAVCGTVGSGKSSCLSCILGGVP 411 (1156)
Q Consensus 388 ~~~ivG~~GsGKSTll~~i~g~~~ 411 (1156)
++||.|++|||||||.+.|.-.+.
T Consensus 24 iIgI~G~~GSGKSTla~~L~~~l~ 47 (198)
T d1rz3a_ 24 VLGIDGLSRSGKTTLANQLSQTLR 47 (198)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhc
Confidence 689999999999999999875443
|
| >d1wb9a2 c.37.1.12 (A:567-800) DNA repair protein MutS, the C-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: DNA repair protein MutS, the C-terminal domain species: Escherichia coli [TaxId: 562]
Probab=95.05 E-value=0.032 Score=56.80 Aligned_cols=43 Identities=9% Similarity=0.058 Sum_probs=29.4
Q ss_pred CCEEEEecCCcCCCHHHHHHHHHH-HHHhc--CCceEEEeecCccc
Q 037346 1070 SKVLVLDEATASVDTATDNQIQQT-LRQHF--SDCTVVTIAHRITS 1112 (1156)
Q Consensus 1070 ~~ILiLDEaTS~LD~~te~~I~~~-l~~~~--~~~TvI~IaHrl~t 1112 (1156)
..++|+||.-++=|++.-..+-.+ ++.+. .++.+++.||-...
T Consensus 121 ~sLvliDE~~~gT~~~eg~~l~~a~l~~l~~~~~~~~i~tTH~~~l 166 (234)
T d1wb9a2 121 YSLVLMDEIGRGTSTYDGLSLAWACAENLANKIKALTLFATHYFEL 166 (234)
T ss_dssp TEEEEEESCCCCSSSSHHHHHHHHHHHHHHHTTCCEEEEECSCGGG
T ss_pred ccEEeecccccCCChhhhhHHHHHhhhhhhccccceEEEecchHHH
Confidence 358999999999998776555444 44332 35678888886543
|
| >d1znwa1 c.37.1.1 (A:20-201) Guanylate kinase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=95.04 E-value=0.0026 Score=62.63 Aligned_cols=24 Identities=33% Similarity=0.497 Sum_probs=20.7
Q ss_pred CceeeCCCCCCHHHHHHHHhhccc
Q 037346 962 PLVLRGRTGSGKSTLIQTLFRIVE 985 (1156)
Q Consensus 962 ~~vL~G~SGsGKSTL~~lL~rl~~ 985 (1156)
-++|.||||||||||++.|..-++
T Consensus 4 iivl~GpsG~GK~tl~~~L~~~~~ 27 (182)
T d1znwa1 4 VVVLSGPSAVGKSTVVRCLRERIP 27 (182)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHST
T ss_pred EEEEECCCCCCHHHHHHHHHhhCC
Confidence 357889999999999999987664
|
| >d1zp6a1 c.37.1.25 (A:6-181) Hypothetical protein Atu3015 {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Atu3015-like domain: Hypothetical protein Atu3015 species: Agrobacterium tumefaciens [TaxId: 358]
Probab=94.92 E-value=0.004 Score=60.35 Aligned_cols=22 Identities=45% Similarity=0.720 Sum_probs=19.6
Q ss_pred ceeeCCCCCCHHHHHHHHhhcc
Q 037346 963 LVLRGRTGSGKSTLIQTLFRIV 984 (1156)
Q Consensus 963 ~vL~G~SGsGKSTL~~lL~rl~ 984 (1156)
++|.|++||||||+.+.|.+-+
T Consensus 7 I~l~G~~GsGKSTia~~La~~l 28 (176)
T d1zp6a1 7 LLLSGHPGSGKSTIAEALANLP 28 (176)
T ss_dssp EEEEECTTSCHHHHHHHHHTCS
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 5688999999999999998765
|
| >d1sxjc2 c.37.1.20 (C:12-238) Replication factor C3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C3 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=94.91 E-value=0.0072 Score=61.50 Aligned_cols=45 Identities=20% Similarity=0.363 Sum_probs=33.2
Q ss_pred cCCCEEEEecCCcCCCHHHHHHHHHHHHHhcCCceEEEeecCcccc
Q 037346 1068 KKSKVLVLDEATASVDTATDNQIQQTLRQHFSDCTVVTIAHRITSV 1113 (1156)
Q Consensus 1068 r~~~ILiLDEaTS~LD~~te~~I~~~l~~~~~~~TvI~IaHrl~ti 1113 (1156)
.+.+++|+||+= .+.......+.+.|.+..+.+-++++++....+
T Consensus 98 ~~~kiiiiDe~d-~~~~~~~~~Ll~~le~~~~~~~~~~~~~~~~~i 142 (227)
T d1sxjc2 98 KGFKLIILDEAD-AMTNAAQNALRRVIERYTKNTRFCVLANYAHKL 142 (227)
T ss_dssp CSCEEEEETTGG-GSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGS
T ss_pred CCeEEEEEeccc-cchhhHHHHHHHHhhhcccceeeccccCcHHHh
Confidence 456799999985 577777888888888776666666777765443
|
| >d1kgda_ c.37.1.1 (A:) Guanylate kinase-like domain of Cask {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase-like domain of Cask species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.87 E-value=0.005 Score=60.34 Aligned_cols=25 Identities=16% Similarity=0.355 Sum_probs=22.1
Q ss_pred eEEEEEcCCCCChHHHHHHHhCCCC
Q 037346 387 MRVAVCGTVGSGKSSCLSCILGGVP 411 (1156)
Q Consensus 387 ~~~~ivG~~GsGKSTll~~i~g~~~ 411 (1156)
..++|+||||+||+||++.|+...+
T Consensus 4 k~ivl~Gpsg~GK~tl~~~L~~~~~ 28 (178)
T d1kgda_ 4 KTLVLLGAHGVGRRHIKNTLITKHP 28 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred CcEEEECCCCCCHHHHHHHHHHhCC
Confidence 5799999999999999999986654
|
| >d1khta_ c.37.1.1 (A:) Adenylate kinase {Archaeon Methanococcus voltae [TaxId: 2188]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Archaeon Methanococcus voltae [TaxId: 2188]
Probab=94.85 E-value=0.0062 Score=59.39 Aligned_cols=27 Identities=22% Similarity=0.332 Sum_probs=22.9
Q ss_pred CeEEEEEcCCCCChHHHHHHHhCCCCC
Q 037346 386 GMRVAVCGTVGSGKSSCLSCILGGVPK 412 (1156)
Q Consensus 386 g~~~~ivG~~GsGKSTll~~i~g~~~~ 412 (1156)
+++++|.|++||||||+.+.|...+..
T Consensus 1 ~kiI~i~G~~GsGKsT~~~~L~~~l~~ 27 (190)
T d1khta_ 1 NKVVVVTGVPGVGSTTSSQLAMDNLRK 27 (190)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHHHT
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 368999999999999999999765543
|
| >d1kaga_ c.37.1.2 (A:) Shikimate kinase (AroK) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Escherichia coli [TaxId: 562]
Probab=94.83 E-value=0.0061 Score=57.96 Aligned_cols=24 Identities=33% Similarity=0.445 Sum_probs=21.0
Q ss_pred CCceeeCCCCCCHHHHHHHHhhcc
Q 037346 961 LPLVLRGRTGSGKSTLIQTLFRIV 984 (1156)
Q Consensus 961 ~~~vL~G~SGsGKSTL~~lL~rl~ 984 (1156)
.+++|.|++||||||+.+.|..-+
T Consensus 3 k~I~l~G~~GsGKSTvak~La~~L 26 (169)
T d1kaga_ 3 RNIFLVGPMGAGKSTIGRQLAQQL 26 (169)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHHT
T ss_pred CeEEEECCCCCCHHHHHHHHHHHh
Confidence 357889999999999999998765
|
| >d1rkba_ c.37.1.1 (A:) Adenylate kinase {Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]
Probab=94.76 E-value=0.0061 Score=58.70 Aligned_cols=23 Identities=22% Similarity=0.296 Sum_probs=19.9
Q ss_pred EEEEEcCCCCChHHHHHHHhCCC
Q 037346 388 RVAVCGTVGSGKSSCLSCILGGV 410 (1156)
Q Consensus 388 ~~~ivG~~GsGKSTll~~i~g~~ 410 (1156)
.++|+||+||||||+.+.|+-.+
T Consensus 6 ~I~i~G~pGsGKTTia~~La~~l 28 (173)
T d1rkba_ 6 NILLTGTPGVGKTTLGKELASKS 28 (173)
T ss_dssp CEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 46799999999999999997544
|
| >d1kaga_ c.37.1.2 (A:) Shikimate kinase (AroK) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Escherichia coli [TaxId: 562]
Probab=94.74 E-value=0.0063 Score=57.86 Aligned_cols=23 Identities=22% Similarity=0.374 Sum_probs=20.5
Q ss_pred EEEEEcCCCCChHHHHHHHhCCC
Q 037346 388 RVAVCGTVGSGKSSCLSCILGGV 410 (1156)
Q Consensus 388 ~~~ivG~~GsGKSTll~~i~g~~ 410 (1156)
.+.|+||+||||||+.+.|+-.+
T Consensus 4 ~I~l~G~~GsGKSTvak~La~~L 26 (169)
T d1kaga_ 4 NIFLVGPMGAGKSTIGRQLAQQL 26 (169)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHT
T ss_pred eEEEECCCCCCHHHHHHHHHHHh
Confidence 47889999999999999998765
|
| >d1r7ra3 c.37.1.20 (A:471-735) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Membrane fusion ATPase VCP/p97 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=94.72 E-value=0.069 Score=55.40 Aligned_cols=29 Identities=21% Similarity=0.220 Sum_probs=24.7
Q ss_pred eeCCeEEEEEcCCCCChHHHHHHHhCCCC
Q 037346 383 VFHGMRVAVCGTVGSGKSSCLSCILGGVP 411 (1156)
Q Consensus 383 i~~g~~~~ivG~~GsGKSTll~~i~g~~~ 411 (1156)
+++..-+.+.||+|||||+|.+++++++.
T Consensus 38 ~~~~~giLL~Gp~GtGKT~l~~ala~~~~ 66 (265)
T d1r7ra3 38 MTPSKGVLFYGPPGCGKTLLAKAIANECQ 66 (265)
T ss_dssp CCCCCEEEEBCCTTSSHHHHHHHHHHHTT
T ss_pred CCCCCeEEEECCCCCcchhHHHHHHHHhC
Confidence 44455688999999999999999999874
|
| >d1mkya2 c.37.1.8 (A:173-358) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase Der, N-terminal and middle domains species: Thermotoga maritima [TaxId: 2336]
Probab=94.60 E-value=0.02 Score=55.83 Aligned_cols=23 Identities=35% Similarity=0.528 Sum_probs=20.9
Q ss_pred EEEEEcCCCCChHHHHHHHhCCC
Q 037346 388 RVAVCGTVGSGKSSCLSCILGGV 410 (1156)
Q Consensus 388 ~~~ivG~~GsGKSTll~~i~g~~ 410 (1156)
.+||+|++|+|||||++.|+|.-
T Consensus 10 kV~iiG~~~~GKSTLin~l~~~~ 32 (186)
T d1mkya2 10 KVAIVGRPNVGKSTLFNAILNKE 32 (186)
T ss_dssp EEEEECSTTSSHHHHHHHHHTST
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
Confidence 58999999999999999999753
|
| >d1gkya_ c.37.1.1 (A:) Guanylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=94.51 E-value=0.0061 Score=60.12 Aligned_cols=23 Identities=30% Similarity=0.645 Sum_probs=20.8
Q ss_pred EEEEcCCCCChHHHHHHHhCCCC
Q 037346 389 VAVCGTVGSGKSSCLSCILGGVP 411 (1156)
Q Consensus 389 ~~ivG~~GsGKSTll~~i~g~~~ 411 (1156)
++|+||+|||||||++.|+...+
T Consensus 4 Ivl~GpsG~GK~tl~~~L~~~~~ 26 (186)
T d1gkya_ 4 IVISGPSGTGKSTLLKKLFAEYP 26 (186)
T ss_dssp EEEECCTTSSHHHHHHHHHHHCT
T ss_pred EEEECCCCCCHHHHHHHHHHhCC
Confidence 78999999999999999987764
|
| >d1r7ra3 c.37.1.20 (A:471-735) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Membrane fusion ATPase VCP/p97 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=94.50 E-value=0.025 Score=58.97 Aligned_cols=23 Identities=22% Similarity=0.456 Sum_probs=20.7
Q ss_pred ceeeCCCCCCHHHHHHHHhhccc
Q 037346 963 LVLRGRTGSGKSTLIQTLFRIVE 985 (1156)
Q Consensus 963 ~vL~G~SGsGKSTL~~lL~rl~~ 985 (1156)
+.|.||+|+|||+|++++++.+.
T Consensus 44 iLL~Gp~GtGKT~l~~ala~~~~ 66 (265)
T d1r7ra3 44 VLFYGPPGCGKTLLAKAIANECQ 66 (265)
T ss_dssp EEEBCCTTSSHHHHHHHHHHHTT
T ss_pred EEEECCCCCcchhHHHHHHHHhC
Confidence 57889999999999999999874
|
| >d1mkya1 c.37.1.8 (A:2-172) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase Der, N-terminal and middle domains species: Thermotoga maritima [TaxId: 2336]
Probab=94.49 E-value=0.0085 Score=57.95 Aligned_cols=23 Identities=22% Similarity=0.319 Sum_probs=20.1
Q ss_pred EEEEEcCCCCChHHHHHHHhCCC
Q 037346 388 RVAVCGTVGSGKSSCLSCILGGV 410 (1156)
Q Consensus 388 ~~~ivG~~GsGKSTll~~i~g~~ 410 (1156)
.++|+|+.|+|||||++.|+|..
T Consensus 2 ~V~liG~~n~GKSsLi~~L~~~~ 24 (171)
T d1mkya1 2 TVLIVGRPNVGKSTLFNKLVKKK 24 (171)
T ss_dssp EEEEECCTTSSHHHHHHHHHC--
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 58999999999999999999853
|
| >d1qf9a_ c.37.1.1 (A:) UMP/CMP kinase {Dictyostelium discoideum [TaxId: 44689]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: UMP/CMP kinase species: Dictyostelium discoideum [TaxId: 44689]
Probab=94.47 E-value=0.009 Score=59.09 Aligned_cols=26 Identities=31% Similarity=0.289 Sum_probs=22.6
Q ss_pred CCeEEEEEcCCCCChHHHHHHHhCCC
Q 037346 385 HGMRVAVCGTVGSGKSSCLSCILGGV 410 (1156)
Q Consensus 385 ~g~~~~ivG~~GsGKSTll~~i~g~~ 410 (1156)
+..+++|+||.||||||+.+.|+-.+
T Consensus 5 kp~iI~i~G~pGSGKsT~a~~La~~~ 30 (194)
T d1qf9a_ 5 KPNVVFVLGGPGSGKGTQCANIVRDF 30 (194)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 44689999999999999999998654
|
| >d1x6va3 c.37.1.4 (A:34-228) Adenosine-5'phosphosulfate kinase (APS kinase) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Adenosine-5'phosphosulfate kinase (APS kinase) domain: Adenosine-5'phosphosulfate kinase (APS kinase) species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.46 E-value=0.005 Score=60.74 Aligned_cols=26 Identities=23% Similarity=0.335 Sum_probs=23.2
Q ss_pred CCeEEEEEcCCCCChHHHHHHHhCCC
Q 037346 385 HGMRVAVCGTVGSGKSSCLSCILGGV 410 (1156)
Q Consensus 385 ~g~~~~ivG~~GsGKSTll~~i~g~~ 410 (1156)
+|-++.++|++||||||+.+.|...+
T Consensus 18 ~g~vI~L~G~pGSGKTTiAk~La~~l 43 (195)
T d1x6va3 18 RGCTVWLTGLSGAGKTTVSMALEEYL 43 (195)
T ss_dssp CCEEEEEESSCHHHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 57899999999999999999997644
|
| >d1u0la2 c.37.1.8 (A:69-293) Probable GTPase EngC (YjeQ), C-terminal domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngC (YjeQ), C-terminal domain species: Thermotoga maritima [TaxId: 2336]
Probab=94.44 E-value=0.0076 Score=60.83 Aligned_cols=30 Identities=20% Similarity=0.330 Sum_probs=21.9
Q ss_pred CceeeCCCCCCHHHHHHHHhhcccCCCceE
Q 037346 962 PLVLRGRTGSGKSTLIQTLFRIVESTAGHI 991 (1156)
Q Consensus 962 ~~vL~G~SGsGKSTL~~lL~rl~~p~~G~I 991 (1156)
..++.|+||.|||||++.|.+-.....|.|
T Consensus 97 t~~~~G~SGVGKSTLiN~L~~~~~~~T~~v 126 (225)
T d1u0la2 97 ISTMAGLSGVGKSSLLNAINPGLKLRVSEV 126 (225)
T ss_dssp EEEEECSTTSSHHHHHHHHSTTCCCC----
T ss_pred eEEEECCCCCCHHHHHHhhcchhhhhccCc
Confidence 347889999999999999987655555544
|
| >d1j8yf2 c.37.1.10 (F:87-297) GTPase domain of the signal sequence recognition protein Ffh {Archaeon Acidianus ambivalens [TaxId: 2283]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal sequence recognition protein Ffh species: Archaeon Acidianus ambivalens [TaxId: 2283]
Probab=94.44 E-value=0.021 Score=57.11 Aligned_cols=23 Identities=30% Similarity=0.443 Sum_probs=14.1
Q ss_pred ceeeCCCCCCHHHHHHHHhhccc
Q 037346 963 LVLRGRTGSGKSTLIQTLFRIVE 985 (1156)
Q Consensus 963 ~vL~G~SGsGKSTL~~lL~rl~~ 985 (1156)
++|+||||+||||.+-=|+..+.
T Consensus 15 i~lvGptGvGKTTTiAKLA~~~~ 37 (211)
T d1j8yf2 15 IMLVGVQGTGKATTAGKLAYFYK 37 (211)
T ss_dssp EEEECSCCC----HHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHHH
Confidence 45789999999998776666554
|
| >d1gkya_ c.37.1.1 (A:) Guanylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=94.42 E-value=0.0082 Score=59.14 Aligned_cols=62 Identities=27% Similarity=0.549 Sum_probs=38.8
Q ss_pred CCceeeCCCCCCHHHHHHHHhhccc-------------CCCceEEEcCeeCCCCChHHHhhcCeeeccccccccccchhc
Q 037346 961 LPLVLRGRTGSGKSTLIQTLFRIVE-------------STAGHILIDGKDISLIGLHDLRTRLSIIPQDPTMFEGTTRSN 1027 (1156)
Q Consensus 961 ~~~vL~G~SGsGKSTL~~lL~rl~~-------------p~~G~I~idG~di~~i~~~~LR~~i~~VpQdp~LF~gTIr~N 1027 (1156)
.|++|.|||||||+||++.|+.-++ |..|+ .||+|-.-++.+...+.+ -+.-++..+.+..|
T Consensus 2 rpIvl~GpsG~GK~tl~~~L~~~~~~~~~~~~~~TTR~~r~~E--~~g~dy~fvs~~~f~~~~---~~g~f~e~~~~~g~ 76 (186)
T d1gkya_ 2 RPIVISGPSGTGKSTLLKKLFAEYPDSFGFSVSSTTRTPRAGE--VNGKDYNFVSVDEFKSMI---KNNEFIEWAQFSGN 76 (186)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHCTTTEEECCEEECSCCCTTC--CBTTTEEECCHHHHHHHH---HTTCEEEEEEETTE
T ss_pred CeEEEECCCCCCHHHHHHHHHHhCCcceeEEEeeccCCCCCCC--cCCccceeccHHHHHHHH---hcccceeeeEEccc
Confidence 4688999999999999999865432 23343 366666666666655443 24444444444333
|
| >d1kgda_ c.37.1.1 (A:) Guanylate kinase-like domain of Cask {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase-like domain of Cask species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.33 E-value=0.0077 Score=58.95 Aligned_cols=24 Identities=33% Similarity=0.444 Sum_probs=20.5
Q ss_pred CCceeeCCCCCCHHHHHHHHhhcc
Q 037346 961 LPLVLRGRTGSGKSTLIQTLFRIV 984 (1156)
Q Consensus 961 ~~~vL~G~SGsGKSTL~~lL~rl~ 984 (1156)
.+++|.||||+||+||++.|++-+
T Consensus 4 k~ivl~Gpsg~GK~tl~~~L~~~~ 27 (178)
T d1kgda_ 4 KTLVLLGAHGVGRRHIKNTLITKH 27 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHC
T ss_pred CcEEEECCCCCCHHHHHHHHHHhC
Confidence 467899999999999999988543
|
| >d2cxxa1 c.37.1.8 (A:2-185) GTP-binding protein engB {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein engB species: Pyrococcus horikoshii [TaxId: 53953]
Probab=94.31 E-value=0.0091 Score=58.32 Aligned_cols=22 Identities=23% Similarity=0.383 Sum_probs=20.6
Q ss_pred EEEEEcCCCCChHHHHHHHhCC
Q 037346 388 RVAVCGTVGSGKSSCLSCILGG 409 (1156)
Q Consensus 388 ~~~ivG~~GsGKSTll~~i~g~ 409 (1156)
.++|+|++|+|||||++.|.|.
T Consensus 2 ~I~lvG~~nvGKSsLin~l~~~ 23 (184)
T d2cxxa1 2 TIIFAGRSNVGKSTLIYRLTGK 23 (184)
T ss_dssp EEEEEEBTTSSHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 4899999999999999999986
|
| >d1uj2a_ c.37.1.6 (A:) Uridine-cytidine kinase 2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Uridine-cytidine kinase 2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.28 E-value=0.0095 Score=59.92 Aligned_cols=43 Identities=21% Similarity=0.188 Sum_probs=28.5
Q ss_pred EEEEEcCCCCChHHHHHHHhCCCCCCCcEEEEc-CeEEEEecCCcC
Q 037346 388 RVAVCGTVGSGKSSCLSCILGGVPKESGIIRLC-GTKAYVAQSPWI 432 (1156)
Q Consensus 388 ~~~ivG~~GsGKSTll~~i~g~~~~~~G~i~~~-g~~~~v~Q~~~~ 432 (1156)
++||.|++||||||+.+.|...+...... .. -.+..++++.+.
T Consensus 4 iIgI~G~~gSGKSTla~~L~~~l~~~~~~--~~~~~~~vi~~D~yy 47 (213)
T d1uj2a_ 4 LIGVSGGTASGKSSVCAKIVQLLGQNEVD--YRQKQVVILSQDSFY 47 (213)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHTTGGGSC--GGGCSEEEEEGGGGB
T ss_pred EEEEECCCCCCHHHHHHHHHHHhchhccc--cCCCceEEEeccccc
Confidence 68999999999999999887655321100 00 134567777653
|
| >d1yrba1 c.37.1.10 (A:1-244) ATP(GTP)-binding protein PAB0955 {Pyrococcus abyssi [TaxId: 29292]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: ATP(GTP)-binding protein PAB0955 species: Pyrococcus abyssi [TaxId: 29292]
Probab=94.28 E-value=0.0094 Score=61.06 Aligned_cols=23 Identities=30% Similarity=0.291 Sum_probs=20.5
Q ss_pred EEEEEcCCCCChHHHHHHHhCCC
Q 037346 388 RVAVCGTVGSGKSSCLSCILGGV 410 (1156)
Q Consensus 388 ~~~ivG~~GsGKSTll~~i~g~~ 410 (1156)
+++|+|+.|||||||++.|+...
T Consensus 2 vi~v~G~~GsGKTTLl~~ll~~~ 24 (244)
T d1yrba1 2 IVVFVGTAGSGKTTLTGEFGRYL 24 (244)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEEcCCCCcHHHHHHHHHHHH
Confidence 58999999999999999998644
|
| >d1tf7a2 c.37.1.11 (A:256-497) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Circadian clock protein KaiC species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]
Probab=94.25 E-value=0.019 Score=58.67 Aligned_cols=56 Identities=14% Similarity=0.113 Sum_probs=34.3
Q ss_pred CCCEEEEecCCcCCCHHHHHHHHHHHH---Hh--cCCceEEEeecCccc----------c-cccCEEEEEeC
Q 037346 1069 KSKVLVLDEATASVDTATDNQIQQTLR---QH--FSDCTVVTIAHRITS----------V-LDSAMVLLLNH 1124 (1156)
Q Consensus 1069 ~~~ILiLDEaTS~LD~~te~~I~~~l~---~~--~~~~TvI~IaHrl~t----------i-~~~D~I~Vl~~ 1124 (1156)
+|+++++|-.++.....++..+.+.+. +. ..++|+++++|--.. + .-+|-|+.|+.
T Consensus 116 ~~~~vviDs~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~ad~vi~l~~ 187 (242)
T d1tf7a2 116 KPARIAIDSLSALARGVSNNAFRQFVIGVTGYAKQEEITGLFTNTSDQFMGAHSITDSHISTITDTIILLQY 187 (242)
T ss_dssp CCSEEEEECHHHHTSSSCHHHHHHHHHHHHHHHHHTTCEEEEEEECSSSSCCCSSCSSCCTTTCSEEEEEEE
T ss_pred CCceeeeecchhhhcCCCHHHHHHHHHHHHHHHHHcCCeEEEEEeeEeeccccccCCcceeeecceEEEEEE
Confidence 678999998776654434443333332 22 247899999885311 1 24888888753
|
| >d1lvga_ c.37.1.1 (A:) Guanylate kinase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=94.24 E-value=0.0085 Score=59.27 Aligned_cols=23 Identities=52% Similarity=0.901 Sum_probs=20.2
Q ss_pred CceeeCCCCCCHHHHHHHHhhcc
Q 037346 962 PLVLRGRTGSGKSTLIQTLFRIV 984 (1156)
Q Consensus 962 ~~vL~G~SGsGKSTL~~lL~rl~ 984 (1156)
|++|.||||||||||++.|+.-+
T Consensus 2 pIvl~GPsGsGK~tl~~~L~~~~ 24 (190)
T d1lvga_ 2 PVVLSGPSGAGKSTLLKKLFQEH 24 (190)
T ss_dssp CEEEECCTTSSHHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHhC
Confidence 68899999999999999986643
|
| >d1qhxa_ c.37.1.3 (A:) Chloramphenicol phosphotransferase {Streptomyces venezuelae [TaxId: 54571]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Chloramphenicol phosphotransferase domain: Chloramphenicol phosphotransferase species: Streptomyces venezuelae [TaxId: 54571]
Probab=94.23 E-value=0.0085 Score=57.81 Aligned_cols=23 Identities=26% Similarity=0.612 Sum_probs=20.5
Q ss_pred ceeeCCCCCCHHHHHHHHhhccc
Q 037346 963 LVLRGRTGSGKSTLIQTLFRIVE 985 (1156)
Q Consensus 963 ~vL~G~SGsGKSTL~~lL~rl~~ 985 (1156)
++|.|++||||||+.+.|.+.+.
T Consensus 6 I~l~G~~GsGKsTva~~L~~~l~ 28 (178)
T d1qhxa_ 6 IILNGGSSAGKSGIVRCLQSVLP 28 (178)
T ss_dssp EEEECCTTSSHHHHHHHHHHHSS
T ss_pred EEEECCCCCCHHHHHHHHHHHcC
Confidence 46779999999999999999874
|
| >d1ly1a_ c.37.1.1 (A:) Polynucleotide kinase, kinase domain {Bacteriophage T4 [TaxId: 10665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Polynucleotide kinase, kinase domain species: Bacteriophage T4 [TaxId: 10665]
Probab=94.22 E-value=0.0087 Score=56.40 Aligned_cols=29 Identities=31% Similarity=0.415 Sum_probs=20.7
Q ss_pred ceeeCCCCCCHHHHHHHHhhcccCCCceEEEc
Q 037346 963 LVLRGRTGSGKSTLIQTLFRIVESTAGHILID 994 (1156)
Q Consensus 963 ~vL~G~SGsGKSTL~~lL~rl~~p~~G~I~id 994 (1156)
+++.|++||||||+++.|.+-. .|...++
T Consensus 5 Iii~G~pGsGKTTla~~L~~~~---~~~~~~~ 33 (152)
T d1ly1a_ 5 ILTIGCPGSGKSTWAREFIAKN---PGFYNIN 33 (152)
T ss_dssp EEEECCTTSSHHHHHHHHHHHS---TTEEEEC
T ss_pred EEEECCCCCCHHHHHHHHHHhC---CCCEEec
Confidence 4567999999999999875532 3445444
|
| >d1n0wa_ c.37.1.11 (A:) DNA repair protein Rad51, catalytic domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.18 E-value=0.012 Score=58.80 Aligned_cols=28 Identities=14% Similarity=0.181 Sum_probs=25.1
Q ss_pred eeCCeEEEEEcCCCCChHHHHHHHhCCC
Q 037346 383 VFHGMRVAVCGTVGSGKSSCLSCILGGV 410 (1156)
Q Consensus 383 i~~g~~~~ivG~~GsGKSTll~~i~g~~ 410 (1156)
+++|+++.|.||+|||||||+..++...
T Consensus 20 i~~G~v~~i~G~~GsGKT~l~l~la~~~ 47 (242)
T d1n0wa_ 20 IETGSITEMFGEFRTGKTQICHTLAVTC 47 (242)
T ss_dssp EETTSEEEEECCTTSSHHHHHHHHHHHT
T ss_pred CcCCEEEEEEeCCCCCHHHHHHHHHHHH
Confidence 8899999999999999999998877543
|
| >d1wf3a1 c.37.1.8 (A:3-180) GTPase Era, N-terminal domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTPase Era, N-terminal domain species: Thermus thermophilus [TaxId: 274]
Probab=94.12 E-value=0.011 Score=57.45 Aligned_cols=22 Identities=41% Similarity=0.534 Sum_probs=21.0
Q ss_pred EEEEEcCCCCChHHHHHHHhCC
Q 037346 388 RVAVCGTVGSGKSSCLSCILGG 409 (1156)
Q Consensus 388 ~~~ivG~~GsGKSTll~~i~g~ 409 (1156)
+++|+|++|+|||||++.|+|.
T Consensus 7 ~I~lvG~~~~GKSSLin~l~~~ 28 (178)
T d1wf3a1 7 FVAIVGKPNVGKSTLLNNLLGV 28 (178)
T ss_dssp EEEEECSTTSSHHHHHHHHHTS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 7999999999999999999986
|
| >d2bdta1 c.37.1.25 (A:1-176) Hypothetical protein BH3686 {Bacillus halodurans [TaxId: 86665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Atu3015-like domain: Hypothetical protein BH3686 species: Bacillus halodurans [TaxId: 86665]
Probab=94.10 E-value=0.0092 Score=57.29 Aligned_cols=30 Identities=30% Similarity=0.527 Sum_probs=23.4
Q ss_pred ceeeCCCCCCHHHHHHHHhhcccCCCceEEEcC
Q 037346 963 LVLRGRTGSGKSTLIQTLFRIVESTAGHILIDG 995 (1156)
Q Consensus 963 ~vL~G~SGsGKSTL~~lL~rl~~p~~G~I~idG 995 (1156)
++|.|++||||||+++.|.+-+. +.+.++|
T Consensus 5 I~i~G~~GsGKTTva~~L~~~~~---~~~~~~~ 34 (176)
T d2bdta1 5 YIITGPAGVGKSTTCKRLAAQLD---NSAYIEG 34 (176)
T ss_dssp EEEECSTTSSHHHHHHHHHHHSS---SEEEEEH
T ss_pred EEEECCCCCCHHHHHHHHHHHcC---CCEEEeh
Confidence 46779999999999999998764 3444444
|
| >d1ak2a1 c.37.1.1 (A:14-146,A:177-233) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]
Probab=94.06 E-value=0.012 Score=57.88 Aligned_cols=27 Identities=22% Similarity=0.366 Sum_probs=23.7
Q ss_pred eCCeEEEEEcCCCCChHHHHHHHhCCC
Q 037346 384 FHGMRVAVCGTVGSGKSSCLSCILGGV 410 (1156)
Q Consensus 384 ~~g~~~~ivG~~GsGKSTll~~i~g~~ 410 (1156)
|+|-.++|+||.||||||+.+.|+-.+
T Consensus 1 p~~~riil~G~pGSGKsT~a~~La~~~ 27 (190)
T d1ak2a1 1 PKGVRAVLLGPPGAGKGTQAPKLAKNF 27 (190)
T ss_dssp CCCCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCccEEEEECCCCCCHHHHHHHHHHHh
Confidence 577889999999999999999998543
|
| >d1yj5a2 c.37.1.1 (A:351-522) 5' polynucleotide kinase-3' phosphatase, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: 5' polynucleotide kinase-3' phosphatase, C-terminal domain species: Mouse (Mus musculus) [TaxId: 10090]
Probab=94.01 E-value=0.013 Score=56.96 Aligned_cols=25 Identities=28% Similarity=0.227 Sum_probs=22.0
Q ss_pred eCCeEEEEEcCCCCChHHHHHHHhC
Q 037346 384 FHGMRVAVCGTVGSGKSSCLSCILG 408 (1156)
Q Consensus 384 ~~g~~~~ivG~~GsGKSTll~~i~g 408 (1156)
++.+++.++|++||||||+.+.++.
T Consensus 12 ~~p~liil~G~pGsGKST~a~~l~~ 36 (172)
T d1yj5a2 12 PNPEVVVAVGFPGAGKSTFIQEHLV 36 (172)
T ss_dssp SSCCEEEEECCTTSSHHHHHHHHTG
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHH
Confidence 5567999999999999999998864
|
| >d1sxjb2 c.37.1.20 (B:7-230) Replication factor C4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C4 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=93.97 E-value=0.021 Score=57.75 Aligned_cols=44 Identities=18% Similarity=0.332 Sum_probs=32.1
Q ss_pred CCCEEEEecCCcCCCHHHHHHHHHHHHHhcCCceEEEeecCcccc
Q 037346 1069 KSKVLVLDEATASVDTATDNQIQQTLRQHFSDCTVVTIAHRITSV 1113 (1156)
Q Consensus 1069 ~~~ILiLDEaTS~LD~~te~~I~~~l~~~~~~~TvI~IaHrl~ti 1113 (1156)
+.+++|+||+- .+.......+...+.+....+..+++++..+.+
T Consensus 101 ~~kviiiDe~d-~~~~~~~~~ll~~~e~~~~~~~~i~~~~~~~~i 144 (224)
T d1sxjb2 101 KHKIVILDEAD-SMTAGAQQALRRTMELYSNSTRFAFACNQSNKI 144 (224)
T ss_dssp CCEEEEEESGG-GSCHHHHHTTHHHHHHTTTTEEEEEEESCGGGS
T ss_pred ceEEEEEeccc-ccchhHHHHHhhhccccccceeeeeccCchhhh
Confidence 56899999987 444555666667777766677888888887654
|
| >d1lnza2 c.37.1.8 (A:158-342) Obg GTP-binding protein middle domain {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Obg GTP-binding protein middle domain species: Bacillus subtilis [TaxId: 1423]
Probab=93.96 E-value=0.0081 Score=58.93 Aligned_cols=21 Identities=33% Similarity=0.442 Sum_probs=19.6
Q ss_pred EEEEcCCCCChHHHHHHHhCC
Q 037346 389 VAVCGTVGSGKSSCLSCILGG 409 (1156)
Q Consensus 389 ~~ivG~~GsGKSTll~~i~g~ 409 (1156)
|||+|++++|||||++.|.|.
T Consensus 4 VaiiG~~nvGKSSLin~L~~~ 24 (185)
T d1lnza2 4 VGLVGFPSVGKSTLLSVVSSA 24 (185)
T ss_dssp EEEESSTTSSHHHHHHHSEEE
T ss_pred EEEECCCCCCHHHHHHHHhCC
Confidence 799999999999999999864
|
| >d1qhla_ c.37.1.12 (A:) Cell division protein MukB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Cell division protein MukB species: Escherichia coli [TaxId: 562]
Probab=93.89 E-value=0.003 Score=62.79 Aligned_cols=33 Identities=21% Similarity=0.237 Sum_probs=23.1
Q ss_pred EEEEEEEcCCCCceeeCCCCCCHHHHHHHHhhcc
Q 037346 951 RHLQVRYAPNLPLVLRGRTGSGKSTLIQTLFRIV 984 (1156)
Q Consensus 951 ~~Vsf~Y~~~~~~vL~G~SGsGKSTL~~lL~rl~ 984 (1156)
++.++...++ -.+|.|+||||||||+.+|.-..
T Consensus 16 ~~~~i~f~~~-~tvi~G~NGsGKStil~Ai~~~L 48 (222)
T d1qhla_ 16 FARTFDLDEL-VTTLSGGNGAGKSTTMAAFVTAL 48 (222)
T ss_dssp EEEEECHHHH-HHHHHSCCSHHHHHHHHHHHHHH
T ss_pred eeEEEEcCCC-eEEEECCCCCCHHHHHHHHHHHh
Confidence 4444444333 24678999999999999997543
|
| >d1lvga_ c.37.1.1 (A:) Guanylate kinase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=93.87 E-value=0.012 Score=58.11 Aligned_cols=23 Identities=30% Similarity=0.486 Sum_probs=20.1
Q ss_pred EEEEcCCCCChHHHHHHHhCCCC
Q 037346 389 VAVCGTVGSGKSSCLSCILGGVP 411 (1156)
Q Consensus 389 ~~ivG~~GsGKSTll~~i~g~~~ 411 (1156)
++|+||+|||||||.+.|+...+
T Consensus 3 Ivl~GPsGsGK~tl~~~L~~~~~ 25 (190)
T d1lvga_ 3 VVLSGPSGAGKSTLLKKLFQEHS 25 (190)
T ss_dssp EEEECCTTSSHHHHHHHHHHHHT
T ss_pred EEEECCCCCCHHHHHHHHHHhCC
Confidence 68999999999999999876543
|
| >d1r8sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF1 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARF1 [TaxId: 9606]
Probab=93.85 E-value=0.012 Score=55.59 Aligned_cols=22 Identities=27% Similarity=0.397 Sum_probs=19.5
Q ss_pred EEEEEcCCCCChHHHHHHHhCC
Q 037346 388 RVAVCGTVGSGKSSCLSCILGG 409 (1156)
Q Consensus 388 ~~~ivG~~GsGKSTll~~i~g~ 409 (1156)
.++|+|++|||||||++.+.+.
T Consensus 2 kivlvG~~~vGKSsLi~~l~~~ 23 (160)
T d1r8sa_ 2 RILMVGLDAAGKTTILYKLKLG 23 (160)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4789999999999999998754
|
| >d1knqa_ c.37.1.17 (A:) Gluconate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Gluconate kinase domain: Gluconate kinase species: Escherichia coli [TaxId: 562]
Probab=93.84 E-value=0.011 Score=56.79 Aligned_cols=22 Identities=36% Similarity=0.520 Sum_probs=19.5
Q ss_pred ceeeCCCCCCHHHHHHHHhhcc
Q 037346 963 LVLRGRTGSGKSTLIQTLFRIV 984 (1156)
Q Consensus 963 ~vL~G~SGsGKSTL~~lL~rl~ 984 (1156)
++|.|++||||||+.+.|..-+
T Consensus 9 ivl~G~~GsGKsT~a~~La~~l 30 (171)
T d1knqa_ 9 YVLMGVSGSGKSAVASEVAHQL 30 (171)
T ss_dssp EEEECSTTSCHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 4677999999999999998865
|
| >d1mkya2 c.37.1.8 (A:173-358) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase Der, N-terminal and middle domains species: Thermotoga maritima [TaxId: 2336]
Probab=93.79 E-value=0.016 Score=56.63 Aligned_cols=21 Identities=33% Similarity=0.593 Sum_probs=19.0
Q ss_pred ceeeCCCCCCHHHHHHHHhhc
Q 037346 963 LVLRGRTGSGKSTLIQTLFRI 983 (1156)
Q Consensus 963 ~vL~G~SGsGKSTL~~lL~rl 983 (1156)
+++.|++|+|||||++.|++-
T Consensus 11 V~iiG~~~~GKSTLin~l~~~ 31 (186)
T d1mkya2 11 VAIVGRPNVGKSTLFNAILNK 31 (186)
T ss_dssp EEEECSTTSSHHHHHHHHHTS
T ss_pred EEEECCCCCCHHHHHHHHHCC
Confidence 578899999999999999874
|
| >d1egaa1 c.37.1.8 (A:4-182) GTPase Era, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTPase Era, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=93.75 E-value=0.014 Score=56.48 Aligned_cols=22 Identities=36% Similarity=0.545 Sum_probs=20.4
Q ss_pred EEEEEcCCCCChHHHHHHHhCC
Q 037346 388 RVAVCGTVGSGKSSCLSCILGG 409 (1156)
Q Consensus 388 ~~~ivG~~GsGKSTll~~i~g~ 409 (1156)
+|+|+|.+|+|||||++.|.|.
T Consensus 7 ~I~iiG~~nvGKSSLin~L~~~ 28 (179)
T d1egaa1 7 FIAIVGRPNVGKSTLLNKLLGQ 28 (179)
T ss_dssp EEEEECSSSSSHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5899999999999999999974
|
| >d3adka_ c.37.1.1 (A:) Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Pig (Sus scrofa) [TaxId: 9823]
Probab=93.74 E-value=0.013 Score=58.10 Aligned_cols=28 Identities=25% Similarity=0.242 Sum_probs=24.9
Q ss_pred eeCCeEEEEEcCCCCChHHHHHHHhCCC
Q 037346 383 VFHGMRVAVCGTVGSGKSSCLSCILGGV 410 (1156)
Q Consensus 383 i~~g~~~~ivG~~GsGKSTll~~i~g~~ 410 (1156)
++++.++.|+||.||||||+.+.|+..+
T Consensus 5 ~~~~~iI~l~G~pGSGKsT~a~~La~~~ 32 (194)
T d3adka_ 5 LKKSKIIFVVGGPGSGKGTQCEKIVQKY 32 (194)
T ss_dssp HHTSCEEEEEECTTSSHHHHHHHHHHHT
T ss_pred ccCCcEEEEECCCCCCHHHHHHHHHHHh
Confidence 4678899999999999999999998754
|
| >d1s96a_ c.37.1.1 (A:) Guanylate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Escherichia coli [TaxId: 562]
Probab=93.73 E-value=0.011 Score=59.16 Aligned_cols=62 Identities=19% Similarity=0.387 Sum_probs=38.2
Q ss_pred CCceeeCCCCCCHHHHHHHHhhcccC--------------CCceEEEcCeeCCCCChHHHhhcCeeeccccccccccchh
Q 037346 961 LPLVLRGRTGSGKSTLIQTLFRIVES--------------TAGHILIDGKDISLIGLHDLRTRLSIIPQDPTMFEGTTRS 1026 (1156)
Q Consensus 961 ~~~vL~G~SGsGKSTL~~lL~rl~~p--------------~~G~I~idG~di~~i~~~~LR~~i~~VpQdp~LF~gTIr~ 1026 (1156)
.-++|.||||||||||.+.|+.-++. ..|+ +||+|---++.+...+.+ -++-++..+++..
T Consensus 3 ~livi~GPSG~GK~tl~~~L~~~~p~~~~~~~is~TTR~~R~~E--~~G~dY~Fvs~~~F~~~i---~~g~flE~~~~~g 77 (205)
T d1s96a_ 3 TLYIVSAPSGAGKSSLIQALLKTQPLYDTQVSVSHTTRQPRPGE--VHGEHYFFVNHDEFKEMI---SRDAFLEHAEVFG 77 (205)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHSCTTTEEECCCEECSCCCTTC--CBTTTBEECCHHHHHHHH---HTTCEEEEEEETT
T ss_pred eEEEEECCCCCCHHHHHHHHHhhCCccCceEEEEEeccCCCccc--cccccceeecHHHHHHHh---hhhhheeEEEECC
Confidence 34678899999999999998766431 1232 366666666666665544 3444444444444
Q ss_pred c
Q 037346 1027 N 1027 (1156)
Q Consensus 1027 N 1027 (1156)
|
T Consensus 78 ~ 78 (205)
T d1s96a_ 78 N 78 (205)
T ss_dssp E
T ss_pred c
Confidence 3
|
| >d1f6ba_ c.37.1.8 (A:) SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: 10029]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: SAR1 species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]
Probab=93.72 E-value=0.013 Score=56.85 Aligned_cols=26 Identities=15% Similarity=0.172 Sum_probs=21.5
Q ss_pred CeEEEEEcCCCCChHHHHHHHhCCCC
Q 037346 386 GMRVAVCGTVGSGKSSCLSCILGGVP 411 (1156)
Q Consensus 386 g~~~~ivG~~GsGKSTll~~i~g~~~ 411 (1156)
.-.++|||++|+|||||++.+.|...
T Consensus 13 ~~kI~lvG~~~vGKTsLl~~l~~~~~ 38 (186)
T d1f6ba_ 13 TGKLVFLGLDNAGKTTLLHMLKDDRL 38 (186)
T ss_dssp CEEEEEEEETTSSHHHHHHHHSCC--
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 34689999999999999999987643
|
| >d1y63a_ c.37.1.1 (A:) Probable kinase LmjF30.1890 {Leishmania major [TaxId: 5664]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Probable kinase LmjF30.1890 species: Leishmania major [TaxId: 5664]
Probab=93.72 E-value=0.012 Score=56.62 Aligned_cols=25 Identities=16% Similarity=0.551 Sum_probs=20.9
Q ss_pred CCceeeCCCCCCHHHHHHHHhhccc
Q 037346 961 LPLVLRGRTGSGKSTLIQTLFRIVE 985 (1156)
Q Consensus 961 ~~~vL~G~SGsGKSTL~~lL~rl~~ 985 (1156)
..++|.|++||||||+.+.|..-+.
T Consensus 6 ~~I~i~G~~GsGKTT~~~~La~~l~ 30 (174)
T d1y63a_ 6 INILITGTPGTGKTSMAEMIAAELD 30 (174)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHST
T ss_pred CEEEEEeCCCCCHHHHHHHHHHHhC
Confidence 3467889999999999999987653
|
| >d1upta_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARL1 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARL1 [TaxId: 9606]
Probab=93.71 E-value=0.013 Score=55.78 Aligned_cols=22 Identities=32% Similarity=0.522 Sum_probs=19.9
Q ss_pred EEEEEcCCCCChHHHHHHHhCC
Q 037346 388 RVAVCGTVGSGKSSCLSCILGG 409 (1156)
Q Consensus 388 ~~~ivG~~GsGKSTll~~i~g~ 409 (1156)
.++|||++|||||||++.+.+.
T Consensus 7 kI~ivG~~~vGKSSLi~~~~~~ 28 (169)
T d1upta_ 7 RILILGLDGAGKTTILYRLQVG 28 (169)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 4899999999999999998765
|
| >d1rkba_ c.37.1.1 (A:) Adenylate kinase {Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]
Probab=93.69 E-value=0.012 Score=56.43 Aligned_cols=22 Identities=36% Similarity=0.510 Sum_probs=19.4
Q ss_pred ceeeCCCCCCHHHHHHHHhhcc
Q 037346 963 LVLRGRTGSGKSTLIQTLFRIV 984 (1156)
Q Consensus 963 ~vL~G~SGsGKSTL~~lL~rl~ 984 (1156)
++|.|++||||||+.+.|..-+
T Consensus 7 I~i~G~pGsGKTTia~~La~~l 28 (173)
T d1rkba_ 7 ILLTGTPGVGKTTLGKELASKS 28 (173)
T ss_dssp EEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHH
Confidence 5788999999999999997655
|
| >d1lw7a2 c.37.1.1 (A:220-411) Transcriptional regulator NadR, ribosylnicotinamide kinase domain {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Transcriptional regulator NadR, ribosylnicotinamide kinase domain species: Haemophilus influenzae [TaxId: 727]
Probab=93.66 E-value=0.01 Score=57.59 Aligned_cols=23 Identities=30% Similarity=0.507 Sum_probs=20.5
Q ss_pred CceeeCCCCCCHHHHHHHHhhcc
Q 037346 962 PLVLRGRTGSGKSTLIQTLFRIV 984 (1156)
Q Consensus 962 ~~vL~G~SGsGKSTL~~lL~rl~ 984 (1156)
.+++.|++|||||||++.|..-+
T Consensus 9 ~I~i~G~~GsGKTTla~~La~~~ 31 (192)
T d1lw7a2 9 TVAILGGESSGKSVLVNKLAAVF 31 (192)
T ss_dssp EEEEECCTTSHHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 36788999999999999998876
|
| >d1udxa2 c.37.1.8 (A:157-336) Obg GTP-binding protein middle domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Obg GTP-binding protein middle domain species: Thermus thermophilus [TaxId: 274]
Probab=93.58 E-value=0.011 Score=57.55 Aligned_cols=21 Identities=33% Similarity=0.463 Sum_probs=19.9
Q ss_pred EEEEcCCCCChHHHHHHHhCC
Q 037346 389 VAVCGTVGSGKSSCLSCILGG 409 (1156)
Q Consensus 389 ~~ivG~~GsGKSTll~~i~g~ 409 (1156)
+||+|.+|+|||||++.|.|.
T Consensus 4 VaivG~~nvGKSTLin~L~~~ 24 (180)
T d1udxa2 4 VGLVGYPNAGKSSLLAAMTRA 24 (180)
T ss_dssp EEEECCGGGCHHHHHHHHCSS
T ss_pred EEEECCCCCCHHHHHHHHhCC
Confidence 899999999999999999885
|
| >d1ukza_ c.37.1.1 (A:) Uridylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Uridylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=93.54 E-value=0.014 Score=57.81 Aligned_cols=26 Identities=19% Similarity=0.211 Sum_probs=22.9
Q ss_pred CCeEEEEEcCCCCChHHHHHHHhCCC
Q 037346 385 HGMRVAVCGTVGSGKSSCLSCILGGV 410 (1156)
Q Consensus 385 ~g~~~~ivG~~GsGKSTll~~i~g~~ 410 (1156)
+-.+++|+||.||||||+.+.|+..|
T Consensus 7 ~~~iI~i~GppGSGKsT~a~~La~~~ 32 (196)
T d1ukza_ 7 QVSVIFVLGGPGAGKGTQCEKLVKDY 32 (196)
T ss_dssp TCEEEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHh
Confidence 34579999999999999999998765
|
| >d1ksha_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL2 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Mouse (Mus musculus), ARL2 [TaxId: 10090]
Probab=93.54 E-value=0.022 Score=54.46 Aligned_cols=24 Identities=25% Similarity=0.299 Sum_probs=21.3
Q ss_pred EEEEEcCCCCChHHHHHHHhCCCC
Q 037346 388 RVAVCGTVGSGKSSCLSCILGGVP 411 (1156)
Q Consensus 388 ~~~ivG~~GsGKSTll~~i~g~~~ 411 (1156)
.++|+|+.|||||||++.+.+...
T Consensus 4 ki~ivG~~~~GKTsLi~~l~~~~~ 27 (165)
T d1ksha_ 4 RLLMLGLDNAGKTTILKKFNGEDV 27 (165)
T ss_dssp EEEEECSTTSSHHHHHHHHTTCCC
T ss_pred EEEEECCCCCCHHHHHHHHcCCCC
Confidence 478999999999999999988643
|
| >d1nrjb_ c.37.1.8 (B:) Signal recognition particle receptor beta-subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Signal recognition particle receptor beta-subunit species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=93.54 E-value=0.014 Score=58.07 Aligned_cols=22 Identities=27% Similarity=0.456 Sum_probs=20.6
Q ss_pred EEEEEcCCCCChHHHHHHHhCC
Q 037346 388 RVAVCGTVGSGKSSCLSCILGG 409 (1156)
Q Consensus 388 ~~~ivG~~GsGKSTll~~i~g~ 409 (1156)
.++|+|++|||||||++.|.|.
T Consensus 5 ~V~lvG~~n~GKTSLln~l~~~ 26 (209)
T d1nrjb_ 5 SIIIAGPQNSGKTSLLTLLTTD 26 (209)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 6899999999999999999875
|
| >d2qtvb1 c.37.1.8 (B:24-189) SAR1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: SAR1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=93.51 E-value=0.015 Score=54.97 Aligned_cols=23 Identities=17% Similarity=0.280 Sum_probs=20.6
Q ss_pred EEEEEcCCCCChHHHHHHHhCCC
Q 037346 388 RVAVCGTVGSGKSSCLSCILGGV 410 (1156)
Q Consensus 388 ~~~ivG~~GsGKSTll~~i~g~~ 410 (1156)
.++++|++|+|||||++.+.+..
T Consensus 2 KI~liG~~nvGKSSLln~l~~~~ 24 (166)
T d2qtvb1 2 KLLFLGLDNAGKTTLLHMLKNDR 24 (166)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 57899999999999999999753
|
| >d1sxje2 c.37.1.20 (E:4-255) Replication factor C5 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C5 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=93.50 E-value=0.059 Score=55.14 Aligned_cols=43 Identities=12% Similarity=0.085 Sum_probs=27.7
Q ss_pred CCCeeeeeCCCCCcCHHHHHHHHHHHHhcC-CCEEEEEccCCCcc
Q 037346 500 DADIFLLDDPFSPVDDHTGAHLFKFCWVSS-SKTVIYATHQVEFL 543 (1156)
Q Consensus 500 ~~~illlDep~s~lD~~~~~~i~~~~~~~~-~~tvi~vtH~~~~~ 543 (1156)
+..++++||+=. |.......+.+.+-... ...+|++|++.+.+
T Consensus 131 ~~~iiiide~d~-l~~~~~~~l~~~~e~~~~~~~~Il~tn~~~~i 174 (252)
T d1sxje2 131 RYKCVIINEANS-LTKDAQAALRRTMEKYSKNIRLIMVCDSMSPI 174 (252)
T ss_dssp CCEEEEEECTTS-SCHHHHHHHHHHHHHSTTTEEEEEEESCSCSS
T ss_pred CceEEEeccccc-cccccchhhhcccccccccccceeeeccccch
Confidence 456999999854 66666555544332223 34578999998754
|
| >d1khta_ c.37.1.1 (A:) Adenylate kinase {Archaeon Methanococcus voltae [TaxId: 2188]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Archaeon Methanococcus voltae [TaxId: 2188]
Probab=93.45 E-value=0.014 Score=56.71 Aligned_cols=28 Identities=21% Similarity=0.278 Sum_probs=22.9
Q ss_pred ceeeCCCCCCHHHHHHHHhhcccCCCce
Q 037346 963 LVLRGRTGSGKSTLIQTLFRIVESTAGH 990 (1156)
Q Consensus 963 ~vL~G~SGsGKSTL~~lL~rl~~p~~G~ 990 (1156)
+++.|++||||||+++.|...+......
T Consensus 4 I~i~G~~GsGKsT~~~~L~~~l~~~~~~ 31 (190)
T d1khta_ 4 VVVTGVPGVGSTTSSQLAMDNLRKEGVN 31 (190)
T ss_dssp EEEECCTTSCHHHHHHHHHHHHHTTTCC
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHcCCC
Confidence 5677999999999999998877655444
|
| >d1gvnb_ c.37.1.21 (B:) Plasmid maintenance system epsilon/zeta, toxin zeta subunit {Streptococcus pyogenes [TaxId: 1314]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Plasmid maintenance system epsilon/zeta, toxin zeta subunit domain: Plasmid maintenance system epsilon/zeta, toxin zeta subunit species: Streptococcus pyogenes [TaxId: 1314]
Probab=93.42 E-value=0.018 Score=59.87 Aligned_cols=25 Identities=32% Similarity=0.372 Sum_probs=22.8
Q ss_pred eEEEEEcCCCCChHHHHHHHhCCCC
Q 037346 387 MRVAVCGTVGSGKSSCLSCILGGVP 411 (1156)
Q Consensus 387 ~~~~ivG~~GsGKSTll~~i~g~~~ 411 (1156)
..+.+.||+|||||||.+.|++++.
T Consensus 33 ~~ilL~GpPGtGKT~la~~la~~~~ 57 (273)
T d1gvnb_ 33 TAFLLGGQPGSGKTSLRSAIFEETQ 57 (273)
T ss_dssp EEEEEECCTTSCTHHHHHHHHHHTT
T ss_pred EEEEEECCCCCCHHHHHHHHHHHhh
Confidence 4688999999999999999999875
|
| >d1rz3a_ c.37.1.6 (A:) Hypothetical protein rbstp0775 {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Hypothetical protein rbstp0775 species: Bacillus stearothermophilus [TaxId: 1422]
Probab=93.37 E-value=0.012 Score=57.79 Aligned_cols=24 Identities=33% Similarity=0.452 Sum_probs=20.3
Q ss_pred ceeeCCCCCCHHHHHHHHhhcccC
Q 037346 963 LVLRGRTGSGKSTLIQTLFRIVES 986 (1156)
Q Consensus 963 ~vL~G~SGsGKSTL~~lL~rl~~p 986 (1156)
++|.|++|||||||++.|...+..
T Consensus 25 IgI~G~~GSGKSTla~~L~~~l~~ 48 (198)
T d1rz3a_ 25 LGIDGLSRSGKTTLANQLSQTLRE 48 (198)
T ss_dssp EEEEECTTSSHHHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHhcc
Confidence 357799999999999999877653
|
| >d1h65a_ c.37.1.8 (A:) Chloroplast protein translocon GTPase Toc34 {Garden pea (Pisum sativum) [TaxId: 3888]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Chloroplast protein translocon GTPase Toc34 species: Garden pea (Pisum sativum) [TaxId: 3888]
Probab=93.33 E-value=0.018 Score=59.77 Aligned_cols=23 Identities=39% Similarity=0.585 Sum_probs=21.2
Q ss_pred EEEEEcCCCCChHHHHHHHhCCC
Q 037346 388 RVAVCGTVGSGKSSCLSCILGGV 410 (1156)
Q Consensus 388 ~~~ivG~~GsGKSTll~~i~g~~ 410 (1156)
.++|+|.+|+|||||+|.|+|.-
T Consensus 34 ~I~LvG~tg~GKSSliN~ilg~~ 56 (257)
T d1h65a_ 34 TILVMGKGGVGKSSTVNSIIGER 56 (257)
T ss_dssp EEEEEESTTSSHHHHHHHHHTSC
T ss_pred EEEEECCCCCcHHHHHHHHhCCC
Confidence 48999999999999999999974
|
| >d1m8pa3 c.37.1.15 (A:391-573) ATP sulfurylase C-terminal domain {Fungus (Penicillium chrysogenum) [TaxId: 5076]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ATP sulfurylase C-terminal domain domain: ATP sulfurylase C-terminal domain species: Fungus (Penicillium chrysogenum) [TaxId: 5076]
Probab=93.29 E-value=0.016 Score=55.97 Aligned_cols=23 Identities=26% Similarity=0.436 Sum_probs=19.7
Q ss_pred ceeeCCCCCCHHHHHHHHhhccc
Q 037346 963 LVLRGRTGSGKSTLIQTLFRIVE 985 (1156)
Q Consensus 963 ~vL~G~SGsGKSTL~~lL~rl~~ 985 (1156)
+.|.|.+||||||+.+.|..-+.
T Consensus 9 I~l~G~~GsGKTTia~~La~~L~ 31 (183)
T d1m8pa3 9 IFLTGYMNSGKDAIARALQVTLN 31 (183)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHHh
Confidence 45789999999999999997653
|
| >d1svia_ c.37.1.8 (A:) Probable GTPase EngB {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngB species: Bacillus subtilis [TaxId: 1423]
Probab=93.26 E-value=0.015 Score=57.39 Aligned_cols=21 Identities=38% Similarity=0.684 Sum_probs=19.3
Q ss_pred ceeeCCCCCCHHHHHHHHhhc
Q 037346 963 LVLRGRTGSGKSTLIQTLFRI 983 (1156)
Q Consensus 963 ~vL~G~SGsGKSTL~~lL~rl 983 (1156)
++|.|++|+|||||++.|.|.
T Consensus 26 I~lvG~~n~GKSTLin~L~g~ 46 (195)
T d1svia_ 26 IALAGRSNVGKSSFINSLINR 46 (195)
T ss_dssp EEEEEBTTSSHHHHHHHHHTC
T ss_pred EEEECCCCCCHHHHHHHhcCC
Confidence 678899999999999999974
|
| >d1xjca_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB species: Bacillus stearothermophilus [TaxId: 1422]
Probab=93.26 E-value=0.016 Score=55.61 Aligned_cols=25 Identities=24% Similarity=0.302 Sum_probs=21.2
Q ss_pred eeeCCCCCCHHHHHHHHhhcccCCC
Q 037346 964 VLRGRTGSGKSTLIQTLFRIVESTA 988 (1156)
Q Consensus 964 vL~G~SGsGKSTL~~lL~rl~~p~~ 988 (1156)
.+.|++|||||||+.-|.+.+....
T Consensus 5 ~I~G~~gSGKTTli~~l~~~L~~~g 29 (165)
T d1xjca_ 5 QVVGYKHSGKTTLMEKWVAAAVREG 29 (165)
T ss_dssp EEECCTTSSHHHHHHHHHHHHHHTT
T ss_pred EEEeCCCCCHHHHHHHHHHHHHhCC
Confidence 5789999999999999988777543
|
| >d2bv3a2 c.37.1.8 (A:7-282) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor G (EF-G), N-terminal (G) domain species: Thermus thermophilus [TaxId: 274]
Probab=93.16 E-value=0.066 Score=55.63 Aligned_cols=98 Identities=13% Similarity=0.140 Sum_probs=46.8
Q ss_pred ceeeCCCCCCHHHHHHHHh---hcccCCCceEEEcCeeCCCCChHHHhhcCeeeccccccccccchhcc--CCCCCCCHH
Q 037346 963 LVLRGRTGSGKSTLIQTLF---RIVESTAGHILIDGKDISLIGLHDLRTRLSIIPQDPTMFEGTTRSNL--DPLEEHADE 1037 (1156)
Q Consensus 963 ~vL~G~SGsGKSTL~~lL~---rl~~p~~G~I~idG~di~~i~~~~LR~~i~~VpQdp~LF~gTIr~Nl--~~~~~~~de 1037 (1156)
+++.|..|||||||+..|+ |..+ ..|++. +|..+.+...++..+.+++-..-..+--..-+-|| .|+...=-.
T Consensus 9 i~i~gh~~~GKTtL~e~ll~~~g~~~-~~g~v~-~~~~~~D~~~~E~~r~~si~~~~~~~~~~~~~~n~iDtPG~~dF~~ 86 (276)
T d2bv3a2 9 IGIAAHIDAGKTTTTERILYYTGRIH-KIGEVH-EGAATMDFMEQERERGITITAAVTTCFWKDHRINIIDAPGHVDFTI 86 (276)
T ss_dssp EEEEECTTSCHHHHHHHHHHHHTSSC-C--------------------CCCCCCCSEEEEEETTEEEEEECCCSSSSCST
T ss_pred EEEEeCCCCCHHHHHHHHHHhcCccc-ccccee-cCceEEeccHHHHhcCCccccceeeeccCCeEEEEecCCchhhhHH
Confidence 5788999999999999995 3333 345553 55667777778877788775553332222233455 354322125
Q ss_pred HHHHHHHHcCCChHHHhhcCCcccc
Q 037346 1038 QIWEALDKCQLGDEVRKKKGKLDSQ 1062 (1156)
Q Consensus 1038 ei~~al~~~~l~~~i~~lp~gl~s~ 1062 (1156)
|+..+|+.+...=.+-.-..|...+
T Consensus 87 e~~~~l~~~D~avlVvda~~Gv~~~ 111 (276)
T d2bv3a2 87 EVERSMRVLDGAIVVFDSSQGVEPQ 111 (276)
T ss_dssp THHHHHHHCCEEEEEEETTTSSCHH
T ss_pred HHHHHHHhhhheEEeccccCCcchh
Confidence 6778888776544444444555544
|
| >d1tq4a_ c.37.1.8 (A:) Interferon-inducible GTPase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Interferon-inducible GTPase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=93.15 E-value=0.049 Score=60.23 Aligned_cols=28 Identities=43% Similarity=0.617 Sum_probs=22.7
Q ss_pred ceeeCCCCCCHHHHHHHHhhcccCCCce
Q 037346 963 LVLRGRTGSGKSTLIQTLFRIVESTAGH 990 (1156)
Q Consensus 963 ~vL~G~SGsGKSTL~~lL~rl~~p~~G~ 990 (1156)
+++.|+||+|||||++.|.|.-.-..|.
T Consensus 59 Iai~G~~n~GKSSLiNaL~G~~~~~~~~ 86 (400)
T d1tq4a_ 59 VAVTGETGSGKSSFINTLRGIGNEEEGA 86 (400)
T ss_dssp EEEEECTTSSHHHHHHHHHTCCTTSTTS
T ss_pred EEEECCCCCCHHHHHHHHhCCCcCCCcc
Confidence 5899999999999999999975433443
|
| >d1viaa_ c.37.1.2 (A:) Shikimate kinase (AroK) {Campylobacter jejuni [TaxId: 197]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Campylobacter jejuni [TaxId: 197]
Probab=93.13 E-value=0.02 Score=54.79 Aligned_cols=22 Identities=27% Similarity=0.463 Sum_probs=19.7
Q ss_pred EEEEcCCCCChHHHHHHHhCCC
Q 037346 389 VAVCGTVGSGKSSCLSCILGGV 410 (1156)
Q Consensus 389 ~~ivG~~GsGKSTll~~i~g~~ 410 (1156)
++|+|++||||||+.+.|+..+
T Consensus 3 I~liG~~GsGKsTi~k~La~~l 24 (161)
T d1viaa_ 3 IVFIGFMGSGKSTLARALAKDL 24 (161)
T ss_dssp EEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 6889999999999999998654
|
| >d1e6ca_ c.37.1.2 (A:) Shikimate kinase (AroK) {Erwinia chrysanthemi [TaxId: 556]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Erwinia chrysanthemi [TaxId: 556]
Probab=93.08 E-value=0.018 Score=55.55 Aligned_cols=24 Identities=13% Similarity=0.209 Sum_probs=20.1
Q ss_pred eEEEEEcCCCCChHHHHHHHhCCC
Q 037346 387 MRVAVCGTVGSGKSSCLSCILGGV 410 (1156)
Q Consensus 387 ~~~~ivG~~GsGKSTll~~i~g~~ 410 (1156)
+.+.++|++||||||+.+.|+-.+
T Consensus 3 ~~Iil~G~~GsGKSTia~~LA~~L 26 (170)
T d1e6ca_ 3 EPIFMVGARGCGMTTVGRELARAL 26 (170)
T ss_dssp CCEEEESCTTSSHHHHHHHHHHHH
T ss_pred CCEEEECCCCCCHHHHHHHHHHHh
Confidence 346789999999999999997544
|
| >d2vp4a1 c.37.1.1 (A:12-208) Deoxyribonucleoside kinase {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Deoxyribonucleoside kinase species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=93.07 E-value=0.018 Score=56.87 Aligned_cols=25 Identities=28% Similarity=0.380 Sum_probs=22.4
Q ss_pred CeEEEEEcCCCCChHHHHHHHhCCC
Q 037346 386 GMRVAVCGTVGSGKSSCLSCILGGV 410 (1156)
Q Consensus 386 g~~~~ivG~~GsGKSTll~~i~g~~ 410 (1156)
.-+++|-|+.||||||+++.|...+
T Consensus 9 p~~I~ieG~~GsGKTTl~~~L~~~l 33 (197)
T d2vp4a1 9 PFTVLIEGNIGSGKTTYLNHFEKYK 33 (197)
T ss_dssp CEEEEEECSTTSCHHHHHHTTGGGT
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHh
Confidence 3489999999999999999998765
|
| >d1t9ha2 c.37.1.8 (A:68-298) Probable GTPase EngC (YjeQ), C-terminal domain {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngC (YjeQ), C-terminal domain species: Bacillus subtilis [TaxId: 1423]
Probab=93.04 E-value=0.0069 Score=61.35 Aligned_cols=31 Identities=26% Similarity=0.418 Sum_probs=19.1
Q ss_pred CceeeCCCCCCHHHHHHHHhhcccCCCceEE
Q 037346 962 PLVLRGRTGSGKSTLIQTLFRIVESTAGHIL 992 (1156)
Q Consensus 962 ~~vL~G~SGsGKSTL~~lL~rl~~p~~G~I~ 992 (1156)
..+|.|+||+|||||++.|.+-.....|.|.
T Consensus 99 ~~vl~G~SGVGKSSLiN~L~~~~~~~t~~vs 129 (231)
T d1t9ha2 99 TTVFAGQSGVGKSSLLNAISPELGLRTNEIS 129 (231)
T ss_dssp EEEEEESHHHHHHHHHHHHCC----------
T ss_pred eEEEECCCCccHHHHHHhhccHhHhhhcccc
Confidence 3478899999999999999987766667665
|
| >d1e6ca_ c.37.1.2 (A:) Shikimate kinase (AroK) {Erwinia chrysanthemi [TaxId: 556]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Erwinia chrysanthemi [TaxId: 556]
Probab=92.99 E-value=0.021 Score=54.98 Aligned_cols=24 Identities=29% Similarity=0.505 Sum_probs=20.7
Q ss_pred CCceeeCCCCCCHHHHHHHHhhcc
Q 037346 961 LPLVLRGRTGSGKSTLIQTLFRIV 984 (1156)
Q Consensus 961 ~~~vL~G~SGsGKSTL~~lL~rl~ 984 (1156)
.+++|.|++||||||+.+.|..-+
T Consensus 3 ~~Iil~G~~GsGKSTia~~LA~~L 26 (170)
T d1e6ca_ 3 EPIFMVGARGCGMTTVGRELARAL 26 (170)
T ss_dssp CCEEEESCTTSSHHHHHHHHHHHH
T ss_pred CCEEEECCCCCCHHHHHHHHHHHh
Confidence 457888999999999999997654
|
| >d1nksa_ c.37.1.1 (A:) Adenylate kinase {Archaeon Sulfolobus acidocaldarius [TaxId: 2285]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Archaeon Sulfolobus acidocaldarius [TaxId: 2285]
Probab=92.97 E-value=0.023 Score=55.38 Aligned_cols=25 Identities=28% Similarity=0.234 Sum_probs=21.7
Q ss_pred eEEEEEcCCCCChHHHHHHHhCCCC
Q 037346 387 MRVAVCGTVGSGKSSCLSCILGGVP 411 (1156)
Q Consensus 387 ~~~~ivG~~GsGKSTll~~i~g~~~ 411 (1156)
+++.|.|++||||||+.+.|...+.
T Consensus 2 kiivi~G~~GsGKTT~~~~La~~L~ 26 (194)
T d1nksa_ 2 KIGIVTGIPGVGKSTVLAKVKEILD 26 (194)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHH
Confidence 4678899999999999999987654
|
| >d1uf9a_ c.37.1.1 (A:) Dephospho-CoA kinase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Dephospho-CoA kinase species: Thermus thermophilus [TaxId: 274]
Probab=92.90 E-value=0.022 Score=55.99 Aligned_cols=20 Identities=30% Similarity=0.589 Sum_probs=18.7
Q ss_pred EEEEEcCCCCChHHHHHHHh
Q 037346 388 RVAVCGTVGSGKSSCLSCIL 407 (1156)
Q Consensus 388 ~~~ivG~~GsGKSTll~~i~ 407 (1156)
++||+|++||||||+.+.|.
T Consensus 5 IIgitG~~gSGKstva~~l~ 24 (191)
T d1uf9a_ 5 IIGITGNIGSGKSTVAALLR 24 (191)
T ss_dssp EEEEEECTTSCHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 78999999999999999885
|
| >d1htwa_ c.37.1.18 (A:) Hypothetical protein HI0065 {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: YjeE-like domain: Hypothetical protein HI0065 species: Haemophilus influenzae [TaxId: 727]
Probab=92.89 E-value=0.028 Score=53.17 Aligned_cols=31 Identities=23% Similarity=0.409 Sum_probs=27.1
Q ss_pred EeeCCeEEEEEcCCCCChHHHHHHHhCCCCC
Q 037346 382 KVFHGMRVAVCGTVGSGKSSCLSCILGGVPK 412 (1156)
Q Consensus 382 ~i~~g~~~~ivG~~GsGKSTll~~i~g~~~~ 412 (1156)
..++|.++++.|+-|||||||.+.++.-+-.
T Consensus 29 ~~~~g~ii~L~G~LGaGKTtfvr~~~~~lg~ 59 (158)
T d1htwa_ 29 HTEKAIMVYLNGDLGAGKTTLTRGMLQGIGH 59 (158)
T ss_dssp CCSSCEEEEEECSTTSSHHHHHHHHHHHTTC
T ss_pred cCCCCeEEEEecCCCccHHHHHHHHHhhccc
Confidence 4578999999999999999999999876643
|
| >d1zina1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=92.87 E-value=0.024 Score=55.08 Aligned_cols=23 Identities=22% Similarity=0.371 Sum_probs=20.1
Q ss_pred EEEEEcCCCCChHHHHHHHhCCC
Q 037346 388 RVAVCGTVGSGKSSCLSCILGGV 410 (1156)
Q Consensus 388 ~~~ivG~~GsGKSTll~~i~g~~ 410 (1156)
.++|+||.||||||+.+.|+-.+
T Consensus 2 ~I~i~G~pGSGKsT~a~~La~~~ 24 (182)
T d1zina1 2 NLVLMGLPGAGKGTQAEKIVAAY 24 (182)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 37899999999999999997654
|
| >d1zaka1 c.37.1.1 (A:3-127,A:159-222) Adenylate kinase {Maize (Zea mays) [TaxId: 4577]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Maize (Zea mays) [TaxId: 4577]
Probab=92.87 E-value=0.021 Score=56.02 Aligned_cols=23 Identities=26% Similarity=0.317 Sum_probs=20.2
Q ss_pred EEEEEcCCCCChHHHHHHHhCCC
Q 037346 388 RVAVCGTVGSGKSSCLSCILGGV 410 (1156)
Q Consensus 388 ~~~ivG~~GsGKSTll~~i~g~~ 410 (1156)
.++|.||.||||||+.+.|.--+
T Consensus 5 ~I~i~GppGsGKsT~a~~La~~~ 27 (189)
T d1zaka1 5 KVMISGAPASGKGTQCELIKTKY 27 (189)
T ss_dssp CEEEEESTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 47899999999999999997654
|
| >d1puia_ c.37.1.8 (A:) Probable GTPase EngB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngB species: Escherichia coli [TaxId: 562]
Probab=92.85 E-value=0.015 Score=56.65 Aligned_cols=24 Identities=33% Similarity=0.480 Sum_probs=21.1
Q ss_pred eEEEEEcCCCCChHHHHHHHhCCC
Q 037346 387 MRVAVCGTVGSGKSSCLSCILGGV 410 (1156)
Q Consensus 387 ~~~~ivG~~GsGKSTll~~i~g~~ 410 (1156)
=.++|+|++++|||||++.|.|.-
T Consensus 17 ~~I~lvG~~NvGKSSL~n~L~~~~ 40 (188)
T d1puia_ 17 IEVAFAGRSNAGKSSALNTLTNQK 40 (188)
T ss_dssp EEEEEEECTTSSHHHHHTTTCCC-
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 359999999999999999998864
|
| >d1sq5a_ c.37.1.6 (A:) Pantothenate kinase PanK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Pantothenate kinase PanK species: Escherichia coli [TaxId: 562]
Probab=92.75 E-value=0.027 Score=59.63 Aligned_cols=44 Identities=11% Similarity=0.240 Sum_probs=31.5
Q ss_pred EEEEEcCCCCChHHHHHHHhCCCCCCCcEEEEcCeEEEEecCCcCCCc
Q 037346 388 RVAVCGTVGSGKSSCLSCILGGVPKESGIIRLCGTKAYVAQSPWIQSG 435 (1156)
Q Consensus 388 ~~~ivG~~GsGKSTll~~i~g~~~~~~G~i~~~g~~~~v~Q~~~~~~~ 435 (1156)
++||.|++||||||+.+.|...+.-..+. -++..++++.+....
T Consensus 82 iIGIaG~sgSGKSTla~~L~~lL~~~~~~----~~v~~Is~D~F~~~~ 125 (308)
T d1sq5a_ 82 IISIAGSVAVGKSTTARVLQALLSRWPEH----RRVELITTDGFLHPN 125 (308)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHHTTSTTC----CCEEEEEGGGGBCCH
T ss_pred EEEEeCCCCCCCcHHHHHHHHHHhhhcCC----CceEEEeeeeeECCc
Confidence 78999999999999998887665422111 146677888776543
|
| >d1h65a_ c.37.1.8 (A:) Chloroplast protein translocon GTPase Toc34 {Garden pea (Pisum sativum) [TaxId: 3888]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Chloroplast protein translocon GTPase Toc34 species: Garden pea (Pisum sativum) [TaxId: 3888]
Probab=92.71 E-value=0.019 Score=59.61 Aligned_cols=21 Identities=24% Similarity=0.574 Sum_probs=19.4
Q ss_pred ceeeCCCCCCHHHHHHHHhhc
Q 037346 963 LVLRGRTGSGKSTLIQTLFRI 983 (1156)
Q Consensus 963 ~vL~G~SGsGKSTL~~lL~rl 983 (1156)
++|.|+||+|||||++.|+|-
T Consensus 35 I~LvG~tg~GKSSliN~ilg~ 55 (257)
T d1h65a_ 35 ILVMGKGGVGKSSTVNSIIGE 55 (257)
T ss_dssp EEEEESTTSSHHHHHHHHHTS
T ss_pred EEEECCCCCcHHHHHHHHhCC
Confidence 688899999999999999984
|
| >d1okkd2 c.37.1.10 (D:97-303) GTPase domain of the signal recognition particle receptor FtsY {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal recognition particle receptor FtsY species: Thermus aquaticus [TaxId: 271]
Probab=92.67 E-value=0.15 Score=50.54 Aligned_cols=24 Identities=33% Similarity=0.484 Sum_probs=19.4
Q ss_pred ceeeCCCCCCHHHHHHHHhhcccC
Q 037346 963 LVLRGRTGSGKSTLIQTLFRIVES 986 (1156)
Q Consensus 963 ~vL~G~SGsGKSTL~~lL~rl~~p 986 (1156)
++|.||||+||||.+-=|+..+.-
T Consensus 9 i~lvGptGvGKTTTiaKLA~~~~~ 32 (207)
T d1okkd2 9 VLVVGVNGVGKTTTIAKLGRYYQN 32 (207)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHHT
T ss_pred EEEECCCCCCHHHHHHHHHHHHHH
Confidence 467899999999988777776653
|
| >d1szpa2 c.37.1.11 (A:145-395) DNA repair protein Rad51, catalytic domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=92.60 E-value=0.03 Score=57.02 Aligned_cols=27 Identities=22% Similarity=0.197 Sum_probs=24.5
Q ss_pred eeCCeEEEEEcCCCCChHHHHHHHhCC
Q 037346 383 VFHGMRVAVCGTVGSGKSSCLSCILGG 409 (1156)
Q Consensus 383 i~~g~~~~ivG~~GsGKSTll~~i~g~ 409 (1156)
+++|+++.|.||+|||||||..-++-.
T Consensus 31 i~~G~~~li~G~pGsGKT~l~lq~~~~ 57 (251)
T d1szpa2 31 VETGSITELFGEFRTGKSQLCHTLAVT 57 (251)
T ss_dssp EESSSEEEEEESTTSSHHHHHHHHTTT
T ss_pred CcCCeEEEEEcCCCCCHHHHHHHHHHH
Confidence 899999999999999999999877643
|
| >d2iyva1 c.37.1.2 (A:2-166) Shikimate kinase (AroK) {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=92.58 E-value=0.026 Score=54.07 Aligned_cols=22 Identities=27% Similarity=0.345 Sum_probs=19.1
Q ss_pred EEEEcCCCCChHHHHHHHhCCC
Q 037346 389 VAVCGTVGSGKSSCLSCILGGV 410 (1156)
Q Consensus 389 ~~ivG~~GsGKSTll~~i~g~~ 410 (1156)
++++|+.||||||+.+.|+..+
T Consensus 4 IvliG~~G~GKSTig~~La~~l 25 (165)
T d2iyva1 4 AVLVGLPGSGKSTIGRRLAKAL 25 (165)
T ss_dssp EEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 5678999999999999998654
|
| >d1teva_ c.37.1.1 (A:) UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: UMP/CMP kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.57 E-value=0.027 Score=55.40 Aligned_cols=23 Identities=30% Similarity=0.319 Sum_probs=20.6
Q ss_pred EEEEEcCCCCChHHHHHHHhCCC
Q 037346 388 RVAVCGTVGSGKSSCLSCILGGV 410 (1156)
Q Consensus 388 ~~~ivG~~GsGKSTll~~i~g~~ 410 (1156)
+++|+||.||||||..+.|+..+
T Consensus 3 iI~i~GppGSGKsT~a~~La~~~ 25 (194)
T d1teva_ 3 VVFVLGGPGAGKGTQCARIVEKY 25 (194)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 68999999999999999998654
|
| >d1p5zb_ c.37.1.1 (B:) Deoxycytidine kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Deoxycytidine kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.56 E-value=0.019 Score=58.49 Aligned_cols=27 Identities=15% Similarity=0.281 Sum_probs=24.3
Q ss_pred CCeEEEEEcCCCCChHHHHHHHhCCCC
Q 037346 385 HGMRVAVCGTVGSGKSSCLSCILGGVP 411 (1156)
Q Consensus 385 ~g~~~~ivG~~GsGKSTll~~i~g~~~ 411 (1156)
++++++|-|+-||||||+++.|...++
T Consensus 1 ~~k~I~ieG~dGsGKST~~~~L~~~l~ 27 (241)
T d1p5zb_ 1 RIKKISIEGNIAAGKSTFVNILKQLCE 27 (241)
T ss_dssp CCEEEEEECSTTSSHHHHHTTTGGGCT
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHh
Confidence 478999999999999999999998764
|
| >d1wb1a4 c.37.1.8 (A:1-179) Elongation factor SelB, N-terminal domain {Methanococcus maripaludis [TaxId: 39152]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor SelB, N-terminal domain species: Methanococcus maripaludis [TaxId: 39152]
Probab=92.53 E-value=0.026 Score=54.92 Aligned_cols=21 Identities=14% Similarity=0.309 Sum_probs=19.8
Q ss_pred EEEEcCCCCChHHHHHHHhCC
Q 037346 389 VAVCGTVGSGKSSCLSCILGG 409 (1156)
Q Consensus 389 ~~ivG~~GsGKSTll~~i~g~ 409 (1156)
+||+|+..+|||||++.|+|.
T Consensus 8 IaiiG~~naGKSTL~n~L~~~ 28 (179)
T d1wb1a4 8 LGIFGHIDHGKTTLSKVLTEI 28 (179)
T ss_dssp EEEEECTTSSHHHHHHHHHTT
T ss_pred EEEEeCCCCcHHHHHHHHHHh
Confidence 899999999999999999974
|
| >d1zj6a1 c.37.1.8 (A:2-178) ADP-ribosylation factor {Human (Homo sapiens), ARL5A [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARL5A [TaxId: 9606]
Probab=92.48 E-value=0.029 Score=54.05 Aligned_cols=22 Identities=23% Similarity=0.297 Sum_probs=20.3
Q ss_pred EEEEEcCCCCChHHHHHHHhCC
Q 037346 388 RVAVCGTVGSGKSSCLSCILGG 409 (1156)
Q Consensus 388 ~~~ivG~~GsGKSTll~~i~g~ 409 (1156)
.++|+|..|||||||++.|.+.
T Consensus 17 kI~vvG~~~~GKSsLi~rl~~~ 38 (177)
T d1zj6a1 17 KVIIVGLDNAGKTTILYQFSMN 38 (177)
T ss_dssp EEEEEESTTSSHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 6899999999999999999874
|
| >d1s3ga1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus globisporus [TaxId: 1459]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Bacillus globisporus [TaxId: 1459]
Probab=92.48 E-value=0.029 Score=54.66 Aligned_cols=23 Identities=22% Similarity=0.361 Sum_probs=20.5
Q ss_pred EEEEEcCCCCChHHHHHHHhCCC
Q 037346 388 RVAVCGTVGSGKSSCLSCILGGV 410 (1156)
Q Consensus 388 ~~~ivG~~GsGKSTll~~i~g~~ 410 (1156)
.+.|+||.||||||+.+.|+-.+
T Consensus 2 ~I~i~G~pGSGKsT~a~~La~~~ 24 (182)
T d1s3ga1 2 NIVLMGLPGAGKGTQADRIVEKY 24 (182)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 47899999999999999999765
|
| >d1bifa1 c.37.1.7 (A:37-249) 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain domain: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=92.48 E-value=0.028 Score=55.87 Aligned_cols=23 Identities=13% Similarity=0.121 Sum_probs=20.8
Q ss_pred EEEEEcCCCCChHHHHHHHhCCC
Q 037346 388 RVAVCGTVGSGKSSCLSCILGGV 410 (1156)
Q Consensus 388 ~~~ivG~~GsGKSTll~~i~g~~ 410 (1156)
+++++|.+||||||+.+.|...+
T Consensus 4 li~l~GlpgsGKSTla~~L~~~l 26 (213)
T d1bifa1 4 LIVMVGLPARGKTYISKKLTRYL 26 (213)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 68999999999999999998654
|
| >d2cxxa1 c.37.1.8 (A:2-185) GTP-binding protein engB {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein engB species: Pyrococcus horikoshii [TaxId: 53953]
Probab=92.42 E-value=0.021 Score=55.59 Aligned_cols=21 Identities=43% Similarity=0.616 Sum_probs=19.0
Q ss_pred ceeeCCCCCCHHHHHHHHhhc
Q 037346 963 LVLRGRTGSGKSTLIQTLFRI 983 (1156)
Q Consensus 963 ~vL~G~SGsGKSTL~~lL~rl 983 (1156)
++|.|++|+|||||++.|.|-
T Consensus 3 I~lvG~~nvGKSsLin~l~~~ 23 (184)
T d2cxxa1 3 IIFAGRSNVGKSTLIYRLTGK 23 (184)
T ss_dssp EEEEEBTTSSHHHHHHHHHSC
T ss_pred EEEECCCCCCHHHHHHHHhCC
Confidence 578999999999999999873
|
| >d2erxa1 c.37.1.8 (A:6-176) di-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: di-Ras2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.41 E-value=0.049 Score=52.16 Aligned_cols=21 Identities=48% Similarity=0.548 Sum_probs=18.8
Q ss_pred EEEEEcCCCCChHHHHHHHhC
Q 037346 388 RVAVCGTVGSGKSSCLSCILG 408 (1156)
Q Consensus 388 ~~~ivG~~GsGKSTll~~i~g 408 (1156)
.++++|..|+|||||++.+++
T Consensus 4 Ki~viG~~~vGKTsLi~r~~~ 24 (171)
T d2erxa1 4 RVAVFGAGGVGKSSLVLRFVK 24 (171)
T ss_dssp EEEEECCTTSSHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 478999999999999998775
|
| >d1uj2a_ c.37.1.6 (A:) Uridine-cytidine kinase 2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Uridine-cytidine kinase 2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.37 E-value=0.023 Score=56.87 Aligned_cols=21 Identities=29% Similarity=0.512 Sum_probs=18.2
Q ss_pred eeeCCCCCCHHHHHHHHhhcc
Q 037346 964 VLRGRTGSGKSTLIQTLFRIV 984 (1156)
Q Consensus 964 vL~G~SGsGKSTL~~lL~rl~ 984 (1156)
+|.|++||||||+.+.|...+
T Consensus 6 gI~G~~gSGKSTla~~L~~~l 26 (213)
T d1uj2a_ 6 GVSGGTASGKSSVCAKIVQLL 26 (213)
T ss_dssp EEECSTTSSHHHHHHHHHHHT
T ss_pred EEECCCCCCHHHHHHHHHHHh
Confidence 567999999999999887665
|
| >d4tmka_ c.37.1.1 (A:) Thymidylate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Escherichia coli [TaxId: 562]
Probab=92.36 E-value=0.032 Score=55.79 Aligned_cols=27 Identities=15% Similarity=0.353 Sum_probs=23.8
Q ss_pred CCeEEEEEcCCCCChHHHHHHHhCCCC
Q 037346 385 HGMRVAVCGTVGSGKSSCLSCILGGVP 411 (1156)
Q Consensus 385 ~g~~~~ivG~~GsGKSTll~~i~g~~~ 411 (1156)
+|.+++|-|+-||||||+++.|...+.
T Consensus 1 rgkfIviEG~dGsGKsT~~~~L~~~L~ 27 (210)
T d4tmka_ 1 RSKYIVIEGLEGAGKTTARNVVVETLE 27 (210)
T ss_dssp CCCEEEEEECTTSCHHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHH
Confidence 589999999999999999999886543
|
| >d1nn5a_ c.37.1.1 (A:) Thymidylate kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.35 E-value=0.032 Score=55.87 Aligned_cols=28 Identities=18% Similarity=0.191 Sum_probs=24.4
Q ss_pred eCCeEEEEEcCCCCChHHHHHHHhCCCC
Q 037346 384 FHGMRVAVCGTVGSGKSSCLSCILGGVP 411 (1156)
Q Consensus 384 ~~g~~~~ivG~~GsGKSTll~~i~g~~~ 411 (1156)
++|.+++|-|+-||||||+.+.|...+.
T Consensus 1 ~rG~lI~ieG~dGsGKsT~~~~L~~~L~ 28 (209)
T d1nn5a_ 1 RRGALIVLEGVDRAGKSTQSRKLVEALC 28 (209)
T ss_dssp CCCCEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred CCeeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 4799999999999999999999876543
|
| >d1jjva_ c.37.1.1 (A:) Dephospho-CoA kinase {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Dephospho-CoA kinase species: Haemophilus influenzae [TaxId: 727]
Probab=92.34 E-value=0.03 Score=55.84 Aligned_cols=20 Identities=30% Similarity=0.498 Sum_probs=18.6
Q ss_pred EEEEEcCCCCChHHHHHHHh
Q 037346 388 RVAVCGTVGSGKSSCLSCIL 407 (1156)
Q Consensus 388 ~~~ivG~~GsGKSTll~~i~ 407 (1156)
++||+|+.||||||+.+.+.
T Consensus 4 iIgITG~igSGKStv~~~l~ 23 (205)
T d1jjva_ 4 IVGLTGGIGSGKTTIANLFT 23 (205)
T ss_dssp EEEEECSTTSCHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 68999999999999999885
|
| >d1x6va3 c.37.1.4 (A:34-228) Adenosine-5'phosphosulfate kinase (APS kinase) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Adenosine-5'phosphosulfate kinase (APS kinase) domain: Adenosine-5'phosphosulfate kinase (APS kinase) species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.25 E-value=0.015 Score=57.10 Aligned_cols=23 Identities=30% Similarity=0.431 Sum_probs=19.8
Q ss_pred ceeeCCCCCCHHHHHHHHhhccc
Q 037346 963 LVLRGRTGSGKSTLIQTLFRIVE 985 (1156)
Q Consensus 963 ~vL~G~SGsGKSTL~~lL~rl~~ 985 (1156)
+.|.|.+||||||+.+.|...+.
T Consensus 22 I~L~G~pGSGKTTiAk~La~~l~ 44 (195)
T d1x6va3 22 VWLTGLSGAGKTTVSMALEEYLV 44 (195)
T ss_dssp EEEESSCHHHHHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHHH
Confidence 45789999999999999987654
|
| >d2gnoa2 c.37.1.20 (A:11-208) gamma subunit of DNA polymerase III, N-domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: gamma subunit of DNA polymerase III, N-domain species: Thermotoga maritima [TaxId: 2336]
Probab=92.20 E-value=0.057 Score=53.41 Aligned_cols=104 Identities=17% Similarity=0.211 Sum_probs=69.3
Q ss_pred ceeeCCCCCCHHHHHHHHhhcccCCCceEEEcCeeCCCCChHHHhhcCeeeccccccccccchhccCCC-CCCCHHHHHH
Q 037346 963 LVLRGRTGSGKSTLIQTLFRIVESTAGHILIDGKDISLIGLHDLRTRLSIIPQDPTMFEGTTRSNLDPL-EEHADEQIWE 1041 (1156)
Q Consensus 963 ~vL~G~SGsGKSTL~~lL~rl~~p~~G~I~idG~di~~i~~~~LR~~i~~VpQdp~LF~gTIr~Nl~~~-~~~~deei~~ 1041 (1156)
..+.|++|+||+|++..|.+...-.. ++.|-++. +.|. ....-++|++
T Consensus 18 ~l~~G~~g~gk~~~a~~l~~~i~~~~-------------------------~~h~D~~~------i~~~~~~I~Id~IR~ 66 (198)
T d2gnoa2 18 ILINGEDLSYPREVSLELPEYVEKFP-------------------------PKASDVLE------IDPEGENIGIDDIRT 66 (198)
T ss_dssp EEEECSSSSHHHHHHHHHHHHHHTSC-------------------------CCTTTEEE------ECCSSSCBCHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHHhccc-------------------------cCCCCEEE------EeCCcCCCCHHHHHH
Confidence 36779999999999999998653110 11111110 1221 1234578887
Q ss_pred HHHHcCCChHHHhhcCCccccccccccCCCEEEEecCCcCCCHHHHHHHHHHHHHhcCCceEEEeecCcccc
Q 037346 1042 ALDKCQLGDEVRKKKGKLDSQGRVLLKKSKVLVLDEATASVDTATDNQIQQTLRQHFSDCTVVTIAHRITSV 1113 (1156)
Q Consensus 1042 al~~~~l~~~i~~lp~gl~s~ARALLr~~~ILiLDEaTS~LD~~te~~I~~~l~~~~~~~TvI~IaHrl~ti 1113 (1156)
..+.+.... ...+.||+|+|||= .|..++...+.+.|++--++...|.+|++.+.+
T Consensus 67 i~~~~~~~~---------------~~~~~KviIId~ad-~l~~~aqNaLLK~LEEPp~~t~fiLit~~~~~l 122 (198)
T d2gnoa2 67 IKDFLNYSP---------------ELYTRKYVIVHDCE-RMTQQAANAFLKALEEPPEYAVIVLNTRRWHYL 122 (198)
T ss_dssp HHHHHTSCC---------------SSSSSEEEEETTGG-GBCHHHHHHTHHHHHSCCTTEEEEEEESCGGGS
T ss_pred HHHHHhhCc---------------ccCCCEEEEEeCcc-ccchhhhhHHHHHHhCCCCCceeeeccCChhhC
Confidence 766665432 12356999999975 577888889999998766677888899997644
|
| >d1nrjb_ c.37.1.8 (B:) Signal recognition particle receptor beta-subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Signal recognition particle receptor beta-subunit species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=92.19 E-value=0.022 Score=56.61 Aligned_cols=21 Identities=29% Similarity=0.517 Sum_probs=19.0
Q ss_pred ceeeCCCCCCHHHHHHHHhhc
Q 037346 963 LVLRGRTGSGKSTLIQTLFRI 983 (1156)
Q Consensus 963 ~vL~G~SGsGKSTL~~lL~rl 983 (1156)
++|.|++|||||||++.|.+-
T Consensus 6 V~lvG~~n~GKTSLln~l~~~ 26 (209)
T d1nrjb_ 6 IIIAGPQNSGKTSLLTLLTTD 26 (209)
T ss_dssp EEEECSTTSSHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHhCC
Confidence 688899999999999999863
|
| >d1viaa_ c.37.1.2 (A:) Shikimate kinase (AroK) {Campylobacter jejuni [TaxId: 197]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Campylobacter jejuni [TaxId: 197]
Probab=92.13 E-value=0.031 Score=53.34 Aligned_cols=29 Identities=38% Similarity=0.570 Sum_probs=23.1
Q ss_pred CceeeCCCCCCHHHHHHHHhhcccCCCceEEEc
Q 037346 962 PLVLRGRTGSGKSTLIQTLFRIVESTAGHILID 994 (1156)
Q Consensus 962 ~~vL~G~SGsGKSTL~~lL~rl~~p~~G~I~id 994 (1156)
.++|.|++||||||+.+.|..-+ |--++|
T Consensus 2 ~I~liG~~GsGKsTi~k~La~~l----~~~~~d 30 (161)
T d1viaa_ 2 NIVFIGFMGSGKSTLARALAKDL----DLVFLD 30 (161)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHH----TCEEEE
T ss_pred cEEEECCCCCCHHHHHHHHHHHh----CCCEEe
Confidence 36788999999999999997765 444555
|
| >d1ak2a1 c.37.1.1 (A:14-146,A:177-233) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]
Probab=92.08 E-value=0.03 Score=54.93 Aligned_cols=26 Identities=31% Similarity=0.387 Sum_probs=22.1
Q ss_pred CCCCceeeCCCCCCHHHHHHHHhhcc
Q 037346 959 PNLPLVLRGRTGSGKSTLIQTLFRIV 984 (1156)
Q Consensus 959 ~~~~~vL~G~SGsGKSTL~~lL~rl~ 984 (1156)
++-+++|.|+.||||||+.+.|..-|
T Consensus 2 ~~~riil~G~pGSGKsT~a~~La~~~ 27 (190)
T d1ak2a1 2 KGVRAVLLGPPGAGKGTQAPKLAKNF 27 (190)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CccEEEEECCCCCCHHHHHHHHHHHh
Confidence 45567888999999999999998655
|
| >d1m7ga_ c.37.1.4 (A:) Adenosine-5'phosphosulfate kinase (APS kinase) {Fungus (Penicillium chrysogenum) [TaxId: 5076]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Adenosine-5'phosphosulfate kinase (APS kinase) domain: Adenosine-5'phosphosulfate kinase (APS kinase) species: Fungus (Penicillium chrysogenum) [TaxId: 5076]
Probab=92.05 E-value=0.038 Score=55.19 Aligned_cols=27 Identities=22% Similarity=0.214 Sum_probs=23.8
Q ss_pred eeCCeEEEEEcCCCCChHHHHHHHhCC
Q 037346 383 VFHGMRVAVCGTVGSGKSSCLSCILGG 409 (1156)
Q Consensus 383 i~~g~~~~ivG~~GsGKSTll~~i~g~ 409 (1156)
=++|.++-+.|.+||||||+.+.|...
T Consensus 21 ~~kg~vIwltGlsGsGKTTia~~L~~~ 47 (208)
T d1m7ga_ 21 NQRGLTIWLTGLSASGKSTLAVELEHQ 47 (208)
T ss_dssp TSSCEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 368899999999999999999998743
|
| >d1xzpa2 c.37.1.8 (A:212-371) TrmE GTPase domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: TrmE GTPase domain species: Thermotoga maritima [TaxId: 2336]
Probab=92.03 E-value=0.011 Score=56.13 Aligned_cols=22 Identities=32% Similarity=0.530 Sum_probs=20.4
Q ss_pred EEEEEcCCCCChHHHHHHHhCC
Q 037346 388 RVAVCGTVGSGKSSCLSCILGG 409 (1156)
Q Consensus 388 ~~~ivG~~GsGKSTll~~i~g~ 409 (1156)
.++++|++|+|||||++.|.|.
T Consensus 2 kI~liG~~n~GKSSLin~l~g~ 23 (160)
T d1xzpa2 2 RMVIVGKPNVGKSTLLNRLLNE 23 (160)
T ss_dssp EEEEECCHHHHTCHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 4799999999999999999985
|
| >d1bifa1 c.37.1.7 (A:37-249) 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain domain: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=91.97 E-value=0.029 Score=55.68 Aligned_cols=23 Identities=26% Similarity=0.469 Sum_probs=20.1
Q ss_pred ceeeCCCCCCHHHHHHHHhhccc
Q 037346 963 LVLRGRTGSGKSTLIQTLFRIVE 985 (1156)
Q Consensus 963 ~vL~G~SGsGKSTL~~lL~rl~~ 985 (1156)
++++|++||||||+++.|.+.+.
T Consensus 5 i~l~GlpgsGKSTla~~L~~~l~ 27 (213)
T d1bifa1 5 IVMVGLPARGKTYISKKLTRYLN 27 (213)
T ss_dssp EEEECCTTSSHHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHHH
Confidence 35779999999999999998765
|
| >d1e4va1 c.37.1.1 (A:1-121,A:157-214) Adenylate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Escherichia coli [TaxId: 562]
Probab=91.93 E-value=0.036 Score=53.75 Aligned_cols=23 Identities=22% Similarity=0.317 Sum_probs=19.9
Q ss_pred EEEEEcCCCCChHHHHHHHhCCC
Q 037346 388 RVAVCGTVGSGKSSCLSCILGGV 410 (1156)
Q Consensus 388 ~~~ivG~~GsGKSTll~~i~g~~ 410 (1156)
.++|+||.||||||..+.|+-.+
T Consensus 2 ~I~i~G~pGSGKsT~~~~La~~~ 24 (179)
T d1e4va1 2 RIILLGAPVAGKGTQAQFIMEKY 24 (179)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 46899999999999999998544
|
| >d1pzna2 c.37.1.11 (A:96-349) DNA repair protein Rad51, catalytic domain {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=91.92 E-value=0.042 Score=56.17 Aligned_cols=25 Identities=24% Similarity=0.301 Sum_probs=23.0
Q ss_pred eeCCeEEEEEcCCCCChHHHHHHHh
Q 037346 383 VFHGMRVAVCGTVGSGKSSCLSCIL 407 (1156)
Q Consensus 383 i~~g~~~~ivG~~GsGKSTll~~i~ 407 (1156)
+++|+++.|.||+|||||||..-++
T Consensus 33 lp~G~~~li~G~pGsGKT~~~lq~~ 57 (254)
T d1pzna2 33 IETQAITEVFGEFGSGKTQLAHTLA 57 (254)
T ss_dssp EESSEEEEEEESTTSSHHHHHHHHH
T ss_pred ccCCEEEEEEcCCCCCHHHHHHHHH
Confidence 8999999999999999999987664
|
| >d2fh5b1 c.37.1.8 (B:63-269) Signal recognition particle receptor beta-subunit {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Signal recognition particle receptor beta-subunit species: Mouse (Mus musculus) [TaxId: 10090]
Probab=91.85 E-value=0.034 Score=55.33 Aligned_cols=22 Identities=32% Similarity=0.427 Sum_probs=20.0
Q ss_pred EEEEEcCCCCChHHHHHHHhCC
Q 037346 388 RVAVCGTVGSGKSSCLSCILGG 409 (1156)
Q Consensus 388 ~~~ivG~~GsGKSTll~~i~g~ 409 (1156)
.|+|+|+.|+|||||++.+.+-
T Consensus 2 ~V~ivG~~~~GKTsLl~~l~~~ 23 (207)
T d2fh5b1 2 AVLFVGLCDSGKTLLFVRLLTG 23 (207)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 5899999999999999999863
|
| >d1okkd2 c.37.1.10 (D:97-303) GTPase domain of the signal recognition particle receptor FtsY {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal recognition particle receptor FtsY species: Thermus aquaticus [TaxId: 271]
Probab=91.83 E-value=0.042 Score=54.66 Aligned_cols=40 Identities=23% Similarity=0.282 Sum_probs=28.4
Q ss_pred CCeEEEEEcCCCCChHHHHHHHhCCCCCCCcEEEEcCeEEEEecCC
Q 037346 385 HGMRVAVCGTVGSGKSSCLSCILGGVPKESGIIRLCGTKAYVAQSP 430 (1156)
Q Consensus 385 ~g~~~~ivG~~GsGKSTll~~i~g~~~~~~G~i~~~g~~~~v~Q~~ 430 (1156)
++.+++++||+|+||||.+-=|+..+. ..| .+++.+.=+.
T Consensus 5 ~~~vi~lvGptGvGKTTTiaKLA~~~~-~~g-----~kV~lit~Dt 44 (207)
T d1okkd2 5 KGRVVLVVGVNGVGKTTTIAKLGRYYQ-NLG-----KKVMFCAGDT 44 (207)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHHHHH-TTT-----CCEEEECCCC
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHH-HCC-----CcEEEEEecc
Confidence 578999999999999999876665554 334 2466655443
|
| >d1tq4a_ c.37.1.8 (A:) Interferon-inducible GTPase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Interferon-inducible GTPase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=91.78 E-value=0.041 Score=60.85 Aligned_cols=24 Identities=46% Similarity=0.548 Sum_probs=21.6
Q ss_pred EEEEEcCCCCChHHHHHHHhCCCC
Q 037346 388 RVAVCGTVGSGKSSCLSCILGGVP 411 (1156)
Q Consensus 388 ~~~ivG~~GsGKSTll~~i~g~~~ 411 (1156)
.++|+|.+|+|||||+|+|.|.-.
T Consensus 58 ~Iai~G~~n~GKSSLiNaL~G~~~ 81 (400)
T d1tq4a_ 58 NVAVTGETGSGKSSFINTLRGIGN 81 (400)
T ss_dssp EEEEEECTTSSHHHHHHHHHTCCT
T ss_pred EEEEECCCCCCHHHHHHHHhCCCc
Confidence 489999999999999999999643
|
| >d2erya1 c.37.1.8 (A:10-180) r-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: r-Ras2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.78 E-value=0.058 Score=51.69 Aligned_cols=21 Identities=33% Similarity=0.425 Sum_probs=18.5
Q ss_pred EEEEEcCCCCChHHHHHHHhC
Q 037346 388 RVAVCGTVGSGKSSCLSCILG 408 (1156)
Q Consensus 388 ~~~ivG~~GsGKSTll~~i~g 408 (1156)
.++|+|.+|+|||||++.+.+
T Consensus 7 Ki~lvG~~~vGKTsLi~r~~~ 27 (171)
T d2erya1 7 RLVVVGGGGVGKSALTIQFIQ 27 (171)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 589999999999999987653
|
| >d1lnza2 c.37.1.8 (A:158-342) Obg GTP-binding protein middle domain {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Obg GTP-binding protein middle domain species: Bacillus subtilis [TaxId: 1423]
Probab=91.76 E-value=0.026 Score=55.04 Aligned_cols=22 Identities=32% Similarity=0.338 Sum_probs=19.5
Q ss_pred CceeeCCCCCCHHHHHHHHhhc
Q 037346 962 PLVLRGRTGSGKSTLIQTLFRI 983 (1156)
Q Consensus 962 ~~vL~G~SGsGKSTL~~lL~rl 983 (1156)
.++|.|++++|||||++.|.|-
T Consensus 3 ~VaiiG~~nvGKSSLin~L~~~ 24 (185)
T d1lnza2 3 DVGLVGFPSVGKSTLLSVVSSA 24 (185)
T ss_dssp CEEEESSTTSSHHHHHHHSEEE
T ss_pred eEEEECCCCCCHHHHHHHHhCC
Confidence 3689999999999999999764
|
| >d1mkya1 c.37.1.8 (A:2-172) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase Der, N-terminal and middle domains species: Thermotoga maritima [TaxId: 2336]
Probab=91.65 E-value=0.034 Score=53.42 Aligned_cols=21 Identities=38% Similarity=0.638 Sum_probs=18.4
Q ss_pred ceeeCCCCCCHHHHHHHHhhc
Q 037346 963 LVLRGRTGSGKSTLIQTLFRI 983 (1156)
Q Consensus 963 ~vL~G~SGsGKSTL~~lL~rl 983 (1156)
+++.|++|+|||||++.|+|-
T Consensus 3 V~liG~~n~GKSsLi~~L~~~ 23 (171)
T d1mkya1 3 VLIVGRPNVGKSTLFNKLVKK 23 (171)
T ss_dssp EEEECCTTSSHHHHHHHHHC-
T ss_pred EEEECCCCCCHHHHHHHHhCC
Confidence 578899999999999999874
|
| >d1ukza_ c.37.1.1 (A:) Uridylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Uridylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=91.64 E-value=0.04 Score=54.24 Aligned_cols=28 Identities=21% Similarity=0.411 Sum_probs=22.7
Q ss_pred ceeeCCCCCCHHHHHHHHhhcccCCCceEEEc
Q 037346 963 LVLRGRTGSGKSTLIQTLFRIVESTAGHILID 994 (1156)
Q Consensus 963 ~vL~G~SGsGKSTL~~lL~rl~~p~~G~I~id 994 (1156)
++|.|+.||||||+++.|..-| |-+.|+
T Consensus 11 I~i~GppGSGKsT~a~~La~~~----g~~~is 38 (196)
T d1ukza_ 11 IFVLGGPGAGKGTQCEKLVKDY----SFVHLS 38 (196)
T ss_dssp EEEECSTTSSHHHHHHHHHHHS----SCEEEE
T ss_pred EEEECCCCCCHHHHHHHHHHHh----CCeEEe
Confidence 3566999999999999998877 445555
|
| >d2gj8a1 c.37.1.8 (A:216-376) Probable tRNA modification GTPase TrmE (MnmE), G domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable tRNA modification GTPase TrmE (MnmE), G domain species: Escherichia coli [TaxId: 562]
Probab=91.63 E-value=0.027 Score=53.43 Aligned_cols=22 Identities=36% Similarity=0.600 Sum_probs=19.5
Q ss_pred CceeeCCCCCCHHHHHHHHhhc
Q 037346 962 PLVLRGRTGSGKSTLIQTLFRI 983 (1156)
Q Consensus 962 ~~vL~G~SGsGKSTL~~lL~rl 983 (1156)
.+++.|++|+|||||++.|.|-
T Consensus 3 kI~lvG~~nvGKSsLin~l~~~ 24 (161)
T d2gj8a1 3 KVVIAGRPNAGKSSLLNALAGR 24 (161)
T ss_dssp EEEEEESTTSSHHHHHHHHHTS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 3678899999999999999864
|
| >d2p67a1 c.37.1.10 (A:1-327) LAO/AO transport system kinase ArgK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: LAO/AO transport system kinase ArgK species: Escherichia coli [TaxId: 562]
Probab=91.63 E-value=0.022 Score=61.07 Aligned_cols=40 Identities=33% Similarity=0.380 Sum_probs=29.4
Q ss_pred CeEEEEEcCCCCChHHHHHHHhCCCCCCCcEEEEcCeEEEEecCCc
Q 037346 386 GMRVAVCGTVGSGKSSCLSCILGGVPKESGIIRLCGTKAYVAQSPW 431 (1156)
Q Consensus 386 g~~~~ivG~~GsGKSTll~~i~g~~~~~~G~i~~~g~~~~v~Q~~~ 431 (1156)
.-.+||+||.|+|||||++.|.+.+.. .| -+++++.=+|.
T Consensus 54 ~~~IgitG~pGaGKSTLi~~l~~~~~~-~g-----~~vavlavDps 93 (327)
T d2p67a1 54 TLRLGVTGTPGAGKSTFLEAFGMLLIR-EG-----LKVAVIAVDPS 93 (327)
T ss_dssp SEEEEEEECTTSCHHHHHHHHHHHHHH-TT-----CCEEEEEECCC
T ss_pred ceEEEeeCCCCCCHHHHHHHHHHHHHh-cC-----CceeeecCCCc
Confidence 458999999999999999999866543 23 14566655553
|
| >d1v5wa_ c.37.1.11 (A:) Meiotic recombination protein DMC1/LIM15 homolog {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Meiotic recombination protein DMC1/LIM15 homolog species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.60 E-value=0.046 Score=55.86 Aligned_cols=26 Identities=12% Similarity=0.054 Sum_probs=24.1
Q ss_pred eeCCeEEEEEcCCCCChHHHHHHHhC
Q 037346 383 VFHGMRVAVCGTVGSGKSSCLSCILG 408 (1156)
Q Consensus 383 i~~g~~~~ivG~~GsGKSTll~~i~g 408 (1156)
|++|+++.|.|++|||||||...++.
T Consensus 34 ip~G~~~~i~G~~GsGKT~lalq~~~ 59 (258)
T d1v5wa_ 34 IESMAITEAFGEFRTGKTQLSHTLCV 59 (258)
T ss_dssp BCSSEEEEEECCTTCTHHHHHHHHHH
T ss_pred CcCCEEEEEECCCCCCHHHHHHHHHH
Confidence 89999999999999999999987763
|
| >d2cdna1 c.37.1.1 (A:1-181) Adenylate kinase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=91.52 E-value=0.043 Score=53.25 Aligned_cols=23 Identities=26% Similarity=0.372 Sum_probs=20.0
Q ss_pred EEEEEcCCCCChHHHHHHHhCCC
Q 037346 388 RVAVCGTVGSGKSSCLSCILGGV 410 (1156)
Q Consensus 388 ~~~ivG~~GsGKSTll~~i~g~~ 410 (1156)
.++|+||.||||||+.+.|+-.+
T Consensus 2 ~I~i~G~pGsGKsT~a~~La~~~ 24 (181)
T d2cdna1 2 RVLLLGPPGAGKGTQAVKLAEKL 24 (181)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 47899999999999999997554
|
| >d1ls1a2 c.37.1.10 (A:89-295) GTPase domain of the signal sequence recognition protein Ffh {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal sequence recognition protein Ffh species: Thermus aquaticus [TaxId: 271]
Probab=91.52 E-value=0.14 Score=50.69 Aligned_cols=23 Identities=35% Similarity=0.365 Sum_probs=18.4
Q ss_pred ceeeCCCCCCHHHHHHHHhhccc
Q 037346 963 LVLRGRTGSGKSTLIQTLFRIVE 985 (1156)
Q Consensus 963 ~vL~G~SGsGKSTL~~lL~rl~~ 985 (1156)
++|.|++|+||||.+.=|+..+.
T Consensus 13 i~lvGp~GvGKTTTiaKLA~~~~ 35 (207)
T d1ls1a2 13 WFLVGLQGSGKTTTAAKLALYYK 35 (207)
T ss_dssp EEEECCTTTTHHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHHH
Confidence 46789999999988877776664
|
| >d1m7ga_ c.37.1.4 (A:) Adenosine-5'phosphosulfate kinase (APS kinase) {Fungus (Penicillium chrysogenum) [TaxId: 5076]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Adenosine-5'phosphosulfate kinase (APS kinase) domain: Adenosine-5'phosphosulfate kinase (APS kinase) species: Fungus (Penicillium chrysogenum) [TaxId: 5076]
Probab=91.51 E-value=0.019 Score=57.52 Aligned_cols=37 Identities=32% Similarity=0.387 Sum_probs=26.1
Q ss_pred ceeeCCCCCCHHHHHHHHhhcccCC--CceEEEcCeeCC
Q 037346 963 LVLRGRTGSGKSTLIQTLFRIVEST--AGHILIDGKDIS 999 (1156)
Q Consensus 963 ~vL~G~SGsGKSTL~~lL~rl~~p~--~G~I~idG~di~ 999 (1156)
+-|.|.||||||||.+.|..-+... --.+.+||-+++
T Consensus 27 IwltGlsGsGKTTia~~L~~~l~~~~~~~~~~ldgD~iR 65 (208)
T d1m7ga_ 27 IWLTGLSASGKSTLAVELEHQLVRDRRVHAYRLDGDNIR 65 (208)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHHHHHCCCEEEECHHHHT
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHhcCceEEEEcchHHH
Confidence 3577999999999999997543211 235778885544
|
| >d1q3ta_ c.37.1.1 (A:) CMP kinase {Streptococcus pneumoniae [TaxId: 1313]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: CMP kinase species: Streptococcus pneumoniae [TaxId: 1313]
Probab=91.49 E-value=0.042 Score=55.14 Aligned_cols=24 Identities=29% Similarity=0.389 Sum_probs=21.2
Q ss_pred EEEEEcCCCCChHHHHHHHhCCCC
Q 037346 388 RVAVCGTVGSGKSSCLSCILGGVP 411 (1156)
Q Consensus 388 ~~~ivG~~GsGKSTll~~i~g~~~ 411 (1156)
+++|-||+||||||..+.|+..+.
T Consensus 5 ~IaIdGp~GsGKgT~ak~La~~lg 28 (223)
T d1q3ta_ 5 QIAIDGPASSGKSTVAKIIAKDFG 28 (223)
T ss_dssp EEEEECSSCSSHHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 578889999999999999997664
|
| >d2iyva1 c.37.1.2 (A:2-166) Shikimate kinase (AroK) {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=91.47 E-value=0.038 Score=52.87 Aligned_cols=22 Identities=45% Similarity=0.561 Sum_probs=19.8
Q ss_pred ceeeCCCCCCHHHHHHHHhhcc
Q 037346 963 LVLRGRTGSGKSTLIQTLFRIV 984 (1156)
Q Consensus 963 ~vL~G~SGsGKSTL~~lL~rl~ 984 (1156)
++|.|.+||||||+.++|..-+
T Consensus 4 IvliG~~G~GKSTig~~La~~l 25 (165)
T d2iyva1 4 AVLVGLPGSGKSTIGRRLAKAL 25 (165)
T ss_dssp EEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 6788999999999999997666
|
| >d2i1qa2 c.37.1.11 (A:65-322) DNA repair protein Rad51, catalytic domain {Archaeon Methanococcus voltae [TaxId: 2188]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Archaeon Methanococcus voltae [TaxId: 2188]
Probab=91.45 E-value=0.05 Score=55.23 Aligned_cols=26 Identities=19% Similarity=0.174 Sum_probs=24.0
Q ss_pred eeCCeEEEEEcCCCCChHHHHHHHhC
Q 037346 383 VFHGMRVAVCGTVGSGKSSCLSCILG 408 (1156)
Q Consensus 383 i~~g~~~~ivG~~GsGKSTll~~i~g 408 (1156)
+++|+++.|.|++|+|||||..-++-
T Consensus 31 l~~G~l~~i~G~~G~GKT~~~l~~a~ 56 (258)
T d2i1qa2 31 LESQSVTEFAGVFGSGKTQIMHQSCV 56 (258)
T ss_dssp EETTEEEEEEESTTSSHHHHHHHHHH
T ss_pred ccCCeEEEEEeCCCCCHHHHHHHHHH
Confidence 89999999999999999999987763
|
| >d1tf7a1 c.37.1.11 (A:14-255) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Circadian clock protein KaiC species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]
Probab=91.45 E-value=0.049 Score=54.92 Aligned_cols=33 Identities=27% Similarity=0.313 Sum_probs=25.6
Q ss_pred ccccceE-EeeCCeEEEEEcCCCCChHHHHHHHh
Q 037346 375 TLRNINL-KVFHGMRVAVCGTVGSGKSSCLSCIL 407 (1156)
Q Consensus 375 ~l~~i~l-~i~~g~~~~ivG~~GsGKSTll~~i~ 407 (1156)
-|+++-- -+++|+++.|.|++|+|||+|..-++
T Consensus 14 ~LD~~l~GGi~~G~~~~I~G~~G~GKT~la~~~~ 47 (242)
T d1tf7a1 14 GFDDISHGGLPIGRSTLVSGTSGTGKTLFSIQFL 47 (242)
T ss_dssp THHHHTTSSEETTSEEEEEESTTSSHHHHHHHHH
T ss_pred HHHHhhcCCCcCCeEEEEEeCCCCCHHHHHHHHH
Confidence 3444332 38999999999999999999986543
|
| >d1tf7a1 c.37.1.11 (A:14-255) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Circadian clock protein KaiC species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]
Probab=91.43 E-value=0.2 Score=50.08 Aligned_cols=49 Identities=12% Similarity=0.091 Sum_probs=28.5
Q ss_pred cCCCCceeeCCCCCCHHHHHHH-HhhcccCCCceEEEcCeeCCCCChHHHhhc
Q 037346 958 APNLPLVLRGRTGSGKSTLIQT-LFRIVESTAGHILIDGKDISLIGLHDLRTR 1009 (1156)
Q Consensus 958 ~~~~~~vL~G~SGsGKSTL~~l-L~rl~~p~~G~I~idG~di~~i~~~~LR~~ 1009 (1156)
+++.-..|.|++|+||||++.- +..........+.+.. .+.+.+.++..
T Consensus 24 ~~G~~~~I~G~~G~GKT~la~~~~~~~~~~~~~~~~~~s---~e~~~~~~~~~ 73 (242)
T d1tf7a1 24 PIGRSTLVSGTSGTGKTLFSIQFLYNGIIEFDEPGVFVT---FEETPQDIIKN 73 (242)
T ss_dssp ETTSEEEEEESTTSSHHHHHHHHHHHHHHHHCCCEEEEE---SSSCHHHHHHH
T ss_pred cCCeEEEEEeCCCCCHHHHHHHHHHHHHHhcCCCccccc---ccCCHHHHHHH
Confidence 4566667889999999999854 4433333333455432 23344444443
|
| >d1vmaa2 c.37.1.10 (A:82-294) GTPase domain of the signal recognition particle receptor FtsY {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal recognition particle receptor FtsY species: Thermotoga maritima [TaxId: 2336]
Probab=91.36 E-value=0.045 Score=54.59 Aligned_cols=42 Identities=17% Similarity=0.195 Sum_probs=27.7
Q ss_pred EeeCCeEEEEEcCCCCChHHHHHHHhCCCCCCCcEEEEcCeEEEEecC
Q 037346 382 KVFHGMRVAVCGTVGSGKSSCLSCILGGVPKESGIIRLCGTKAYVAQS 429 (1156)
Q Consensus 382 ~i~~g~~~~ivG~~GsGKSTll~~i~g~~~~~~G~i~~~g~~~~v~Q~ 429 (1156)
.-++..++++|||+|+||||.+-=|+-.+. ..| .+++.+.=+
T Consensus 7 ~~~~p~vi~lvGptGvGKTTTiAKLAa~~~-~~~-----~kV~lit~D 48 (213)
T d1vmaa2 7 PPEPPFVIMVVGVNGTGKTTSCGKLAKMFV-DEG-----KSVVLAAAD 48 (213)
T ss_dssp CSSSCEEEEEECCTTSSHHHHHHHHHHHHH-HTT-----CCEEEEEEC
T ss_pred CCCCCEEEEEECCCCCCHHHHHHHHHHHHH-HCC-----CceEEEeec
Confidence 334556889999999999998766664442 233 245665544
|
| >d3raba_ c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab3a species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=91.35 E-value=0.042 Score=52.70 Aligned_cols=21 Identities=24% Similarity=0.351 Sum_probs=18.7
Q ss_pred EEEEEcCCCCChHHHHHHHhC
Q 037346 388 RVAVCGTVGSGKSSCLSCILG 408 (1156)
Q Consensus 388 ~~~ivG~~GsGKSTll~~i~g 408 (1156)
.++++|+.|+|||||++.+.+
T Consensus 7 Ki~vvG~~~vGKTsLi~~l~~ 27 (169)
T d3raba_ 7 KILIIGNSSVGKTSFLFRYAD 27 (169)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHc
Confidence 389999999999999998764
|
| >d1in4a2 c.37.1.20 (A:17-254) Holliday junction helicase RuvB {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Holliday junction helicase RuvB species: Thermotoga maritima [TaxId: 2336]
Probab=91.29 E-value=0.033 Score=56.70 Aligned_cols=26 Identities=23% Similarity=0.364 Sum_probs=22.8
Q ss_pred EEEEEcCCCCChHHHHHHHhCCCCCC
Q 037346 388 RVAVCGTVGSGKSSCLSCILGGVPKE 413 (1156)
Q Consensus 388 ~~~ivG~~GsGKSTll~~i~g~~~~~ 413 (1156)
.+.+.||+|+||||+.++|+.++...
T Consensus 37 ~~L~~GPpGtGKT~lA~~la~~~~~~ 62 (238)
T d1in4a2 37 HVLLAGPPGLGKTTLAHIIASELQTN 62 (238)
T ss_dssp CEEEESSTTSSHHHHHHHHHHHHTCC
T ss_pred eEEEECCCCCcHHHHHHHHHhccCCC
Confidence 36799999999999999999887654
|
| >d1tmka_ c.37.1.1 (A:) Thymidylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=91.28 E-value=0.049 Score=54.64 Aligned_cols=28 Identities=14% Similarity=0.226 Sum_probs=25.2
Q ss_pred CCeEEEEEcCCCCChHHHHHHHhCCCCC
Q 037346 385 HGMRVAVCGTVGSGKSSCLSCILGGVPK 412 (1156)
Q Consensus 385 ~g~~~~ivG~~GsGKSTll~~i~g~~~~ 412 (1156)
+|.+++|-|+-||||||+.+.|...+..
T Consensus 2 kGk~I~iEG~DGsGKST~~~~L~~~L~~ 29 (214)
T d1tmka_ 2 RGKLILIEGLDRTGKTTQCNILYKKLQP 29 (214)
T ss_dssp CCCEEEEEESTTSSHHHHHHHHHHHTTT
T ss_pred CeEEEEEECCCCCcHHHHHHHHHHHHHh
Confidence 6999999999999999999999876653
|
| >d1r8sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF1 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARF1 [TaxId: 9606]
Probab=91.22 E-value=0.04 Score=51.73 Aligned_cols=20 Identities=25% Similarity=0.463 Sum_probs=18.0
Q ss_pred ceeeCCCCCCHHHHHHHHhh
Q 037346 963 LVLRGRTGSGKSTLIQTLFR 982 (1156)
Q Consensus 963 ~vL~G~SGsGKSTL~~lL~r 982 (1156)
+++.|++|||||||++.|.+
T Consensus 3 ivlvG~~~vGKSsLi~~l~~ 22 (160)
T d1r8sa_ 3 ILMVGLDAAGKTTILYKLKL 22 (160)
T ss_dssp EEEECSTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHhc
Confidence 57889999999999999865
|
| >d1ky3a_ c.37.1.8 (A:) Rab-related protein ypt7p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-related protein ypt7p species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=91.21 E-value=0.055 Score=51.99 Aligned_cols=21 Identities=29% Similarity=0.509 Sum_probs=18.9
Q ss_pred EEEEEcCCCCChHHHHHHHhC
Q 037346 388 RVAVCGTVGSGKSSCLSCILG 408 (1156)
Q Consensus 388 ~~~ivG~~GsGKSTll~~i~g 408 (1156)
.++|+|+.|+|||||++.+.+
T Consensus 4 Ki~~vG~~~vGKSsLi~~~~~ 24 (175)
T d1ky3a_ 4 KVIILGDSGVGKTSLMHRYVN 24 (175)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHc
Confidence 378999999999999998875
|
| >d1ckea_ c.37.1.1 (A:) CMP kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: CMP kinase species: Escherichia coli [TaxId: 562]
Probab=91.20 E-value=0.047 Score=54.66 Aligned_cols=24 Identities=17% Similarity=0.375 Sum_probs=21.7
Q ss_pred EEEEEcCCCCChHHHHHHHhCCCC
Q 037346 388 RVAVCGTVGSGKSSCLSCILGGVP 411 (1156)
Q Consensus 388 ~~~ivG~~GsGKSTll~~i~g~~~ 411 (1156)
+++|-||.||||||+.+.|...+.
T Consensus 5 iI~I~GppGSGKgT~ak~La~~~g 28 (225)
T d1ckea_ 5 VITIDGPSGAGKGTLCKAMAEALQ 28 (225)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 889999999999999999997654
|
| >d1egaa1 c.37.1.8 (A:4-182) GTPase Era, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTPase Era, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=91.19 E-value=0.04 Score=53.14 Aligned_cols=21 Identities=38% Similarity=0.631 Sum_probs=18.9
Q ss_pred ceeeCCCCCCHHHHHHHHhhc
Q 037346 963 LVLRGRTGSGKSTLIQTLFRI 983 (1156)
Q Consensus 963 ~vL~G~SGsGKSTL~~lL~rl 983 (1156)
++|.|++|+|||||++.|.|-
T Consensus 8 I~iiG~~nvGKSSLin~L~~~ 28 (179)
T d1egaa1 8 IAIVGRPNVGKSTLLNKLLGQ 28 (179)
T ss_dssp EEEECSSSSSHHHHHHHHHTC
T ss_pred EEEECCCCCCHHHHHHHHhCC
Confidence 578899999999999999873
|
| >d1fzqa_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL3 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Mouse (Mus musculus), ARL3 [TaxId: 10090]
Probab=91.14 E-value=0.047 Score=52.53 Aligned_cols=22 Identities=23% Similarity=0.380 Sum_probs=19.8
Q ss_pred EEEEEcCCCCChHHHHHHHhCC
Q 037346 388 RVAVCGTVGSGKSSCLSCILGG 409 (1156)
Q Consensus 388 ~~~ivG~~GsGKSTll~~i~g~ 409 (1156)
.++++|+.|+|||||++.+.+.
T Consensus 18 kI~vvG~~~vGKSsLi~~l~~~ 39 (176)
T d1fzqa_ 18 RILLLGLDNAGKTTLLKQLASE 39 (176)
T ss_dssp EEEEEESTTSSHHHHHHHHCCS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5899999999999999999764
|
| >d1ctqa_ c.37.1.8 (A:) cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: cH-p21 Ras protein species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.11 E-value=0.058 Score=51.43 Aligned_cols=22 Identities=27% Similarity=0.434 Sum_probs=19.4
Q ss_pred EEEEEcCCCCChHHHHHHHhCC
Q 037346 388 RVAVCGTVGSGKSSCLSCILGG 409 (1156)
Q Consensus 388 ~~~ivG~~GsGKSTll~~i~g~ 409 (1156)
.++++|++|+|||||++.+.+.
T Consensus 5 Ki~viG~~~vGKTsli~~l~~~ 26 (166)
T d1ctqa_ 5 KLVVVGAGGVGKSALTIQLIQN 26 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 4899999999999999988753
|
| >d1sxja2 c.37.1.20 (A:295-547) Replication factor C1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=91.10 E-value=0.041 Score=56.49 Aligned_cols=24 Identities=17% Similarity=0.286 Sum_probs=21.8
Q ss_pred EEEEEcCCCCChHHHHHHHhCCCC
Q 037346 388 RVAVCGTVGSGKSSCLSCILGGVP 411 (1156)
Q Consensus 388 ~~~ivG~~GsGKSTll~~i~g~~~ 411 (1156)
.+.+.||+|+||||++++|+.++.
T Consensus 54 ~lll~GPpG~GKTt~a~~la~~~~ 77 (253)
T d1sxja2 54 AAMLYGPPGIGKTTAAHLVAQELG 77 (253)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHTT
T ss_pred eEEEECCCCCCHHHHHHHHHHHHH
Confidence 578999999999999999998765
|
| >d1a7ja_ c.37.1.6 (A:) Phosphoribulokinase {Rhodobacter sphaeroides [TaxId: 1063]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Phosphoribulokinase species: Rhodobacter sphaeroides [TaxId: 1063]
Probab=91.03 E-value=0.032 Score=58.30 Aligned_cols=39 Identities=18% Similarity=0.255 Sum_probs=25.9
Q ss_pred EEEEEcCCCCChHHHHHHHhCCCCCCCcEEEEcCeEEEEecCCcC
Q 037346 388 RVAVCGTVGSGKSSCLSCILGGVPKESGIIRLCGTKAYVAQSPWI 432 (1156)
Q Consensus 388 ~~~ivG~~GsGKSTll~~i~g~~~~~~G~i~~~g~~~~v~Q~~~~ 432 (1156)
++||.|++||||||+.+.|...+... | -+.+.++|+.+-
T Consensus 6 IIgIaG~SGSGKTTva~~l~~i~~~~-~-----v~~~iI~~Dsfy 44 (288)
T d1a7ja_ 6 IISVTGSSGAGTSTVKHTFDQIFRRE-G-----VKAVSIEGDAFH 44 (288)
T ss_dssp EEEEESCC---CCTHHHHHHHHHHHH-T-----CCEEEEEGGGGB
T ss_pred EEEEECCCCCcHHHHHHHHHHHHhhc-C-----CCeEEEeCCCCC
Confidence 89999999999999999887655321 1 134677787653
|
| >d1udxa2 c.37.1.8 (A:157-336) Obg GTP-binding protein middle domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Obg GTP-binding protein middle domain species: Thermus thermophilus [TaxId: 274]
Probab=91.01 E-value=0.03 Score=54.29 Aligned_cols=21 Identities=33% Similarity=0.510 Sum_probs=19.1
Q ss_pred ceeeCCCCCCHHHHHHHHhhc
Q 037346 963 LVLRGRTGSGKSTLIQTLFRI 983 (1156)
Q Consensus 963 ~vL~G~SGsGKSTL~~lL~rl 983 (1156)
++|.|++|+|||||++.|.|-
T Consensus 4 VaivG~~nvGKSTLin~L~~~ 24 (180)
T d1udxa2 4 VGLVGYPNAGKSSLLAAMTRA 24 (180)
T ss_dssp EEEECCGGGCHHHHHHHHCSS
T ss_pred EEEECCCCCCHHHHHHHHhCC
Confidence 689999999999999999864
|
| >d1akya1 c.37.1.1 (A:3-130,A:169-220) Adenylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=91.01 E-value=0.052 Score=52.66 Aligned_cols=23 Identities=22% Similarity=0.377 Sum_probs=20.1
Q ss_pred EEEEEcCCCCChHHHHHHHhCCC
Q 037346 388 RVAVCGTVGSGKSSCLSCILGGV 410 (1156)
Q Consensus 388 ~~~ivG~~GsGKSTll~~i~g~~ 410 (1156)
.+.|+||.||||||+.+.|+-.+
T Consensus 4 rIvl~G~pGSGKtT~a~~La~~~ 26 (180)
T d1akya1 4 RMVLIGPPGAGKGTQAPNLQERF 26 (180)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 46789999999999999998654
|
| >d1vhta_ c.37.1.1 (A:) Dephospho-CoA kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Dephospho-CoA kinase species: Escherichia coli [TaxId: 562]
Probab=90.99 E-value=0.051 Score=54.21 Aligned_cols=20 Identities=40% Similarity=0.594 Sum_probs=18.7
Q ss_pred EEEEEcCCCCChHHHHHHHh
Q 037346 388 RVAVCGTVGSGKSSCLSCIL 407 (1156)
Q Consensus 388 ~~~ivG~~GsGKSTll~~i~ 407 (1156)
++||+|+.||||||..+.+.
T Consensus 5 iIgitG~igSGKStv~~~l~ 24 (208)
T d1vhta_ 5 IVALTGGIGSGKSTVANAFA 24 (208)
T ss_dssp EEEEECCTTSCHHHHHHHHH
T ss_pred EEEEECCCcCCHHHHHHHHH
Confidence 78999999999999999885
|
| >d1zd9a1 c.37.1.8 (A:18-181) ADP-ribosylation factor {Human (Homo sapiens), ARL8A [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARL8A [TaxId: 9606]
Probab=90.97 E-value=0.048 Score=51.91 Aligned_cols=21 Identities=24% Similarity=0.390 Sum_probs=18.4
Q ss_pred EEEEEcCCCCChHHHHHHHhC
Q 037346 388 RVAVCGTVGSGKSSCLSCILG 408 (1156)
Q Consensus 388 ~~~ivG~~GsGKSTll~~i~g 408 (1156)
.++++|+.|+|||||++.+.+
T Consensus 4 ki~i~G~~~~GKTsLl~~l~~ 24 (164)
T d1zd9a1 4 ELTLVGLQYSGKTTFVNVIAS 24 (164)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHc
Confidence 478999999999999997754
|
| >d1f6ba_ c.37.1.8 (A:) SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: 10029]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: SAR1 species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]
Probab=90.91 E-value=0.03 Score=54.15 Aligned_cols=22 Identities=36% Similarity=0.460 Sum_probs=19.3
Q ss_pred CceeeCCCCCCHHHHHHHHhhc
Q 037346 962 PLVLRGRTGSGKSTLIQTLFRI 983 (1156)
Q Consensus 962 ~~vL~G~SGsGKSTL~~lL~rl 983 (1156)
+++|.|++|+|||||++.|.+=
T Consensus 15 kI~lvG~~~vGKTsLl~~l~~~ 36 (186)
T d1f6ba_ 15 KLVFLGLDNAGKTTLLHMLKDD 36 (186)
T ss_dssp EEEEEEETTSSHHHHHHHHSCC
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 4689999999999999999764
|
| >d2atva1 c.37.1.8 (A:5-172) Ras-like estrogen-regulated growth inhibitor, RERG {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ras-like estrogen-regulated growth inhibitor, RERG species: Human (Homo sapiens) [TaxId: 9606]
Probab=90.89 E-value=0.092 Score=50.10 Aligned_cols=21 Identities=33% Similarity=0.563 Sum_probs=18.9
Q ss_pred EEEEEcCCCCChHHHHHHHhC
Q 037346 388 RVAVCGTVGSGKSSCLSCILG 408 (1156)
Q Consensus 388 ~~~ivG~~GsGKSTll~~i~g 408 (1156)
.++++|+.|+|||||++.+.+
T Consensus 4 Ki~lvG~~~vGKTsli~r~~~ 24 (168)
T d2atva1 4 KLAIFGRAGVGKSALVVRFLT 24 (168)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 478999999999999998874
|
| >d2ak3a1 c.37.1.1 (A:0-124,A:162-225) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]
Probab=90.82 E-value=0.055 Score=53.06 Aligned_cols=23 Identities=39% Similarity=0.486 Sum_probs=20.6
Q ss_pred EEEEEcCCCCChHHHHHHHhCCC
Q 037346 388 RVAVCGTVGSGKSSCLSCILGGV 410 (1156)
Q Consensus 388 ~~~ivG~~GsGKSTll~~i~g~~ 410 (1156)
.++|+||.||||||+.+.|+-.+
T Consensus 8 rIiliG~PGSGKtT~a~~La~~~ 30 (189)
T d2ak3a1 8 RAAIMGAPGSGKGTVSSRITKHF 30 (189)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHB
T ss_pred eEEEECCCCCCHHHHHHHHHHHH
Confidence 57899999999999999998754
|
| >d1wf3a1 c.37.1.8 (A:3-180) GTPase Era, N-terminal domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTPase Era, N-terminal domain species: Thermus thermophilus [TaxId: 274]
Probab=90.82 E-value=0.046 Score=52.83 Aligned_cols=21 Identities=33% Similarity=0.669 Sum_probs=19.3
Q ss_pred ceeeCCCCCCHHHHHHHHhhc
Q 037346 963 LVLRGRTGSGKSTLIQTLFRI 983 (1156)
Q Consensus 963 ~vL~G~SGsGKSTL~~lL~rl 983 (1156)
++|.|++|+|||||++.|+|-
T Consensus 8 I~lvG~~~~GKSSLin~l~~~ 28 (178)
T d1wf3a1 8 VAIVGKPNVGKSTLLNNLLGV 28 (178)
T ss_dssp EEEECSTTSSHHHHHHHHHTS
T ss_pred EEEECCCCCCHHHHHHHHhCC
Confidence 688899999999999999875
|
| >d1yzqa1 c.37.1.8 (A:14-177) Rab6 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab6 species: Human (Homo sapiens) [TaxId: 9606]
Probab=90.80 E-value=0.068 Score=50.70 Aligned_cols=21 Identities=19% Similarity=0.343 Sum_probs=19.0
Q ss_pred EEEEEcCCCCChHHHHHHHhC
Q 037346 388 RVAVCGTVGSGKSSCLSCILG 408 (1156)
Q Consensus 388 ~~~ivG~~GsGKSTll~~i~g 408 (1156)
.++|+|..|+|||||++.+.+
T Consensus 2 Kv~vvG~~~vGKTsLi~r~~~ 22 (164)
T d1yzqa1 2 KLVFLGEQSVGKTSLITRFMY 22 (164)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 478999999999999998874
|
| >d1zaka1 c.37.1.1 (A:3-127,A:159-222) Adenylate kinase {Maize (Zea mays) [TaxId: 4577]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Maize (Zea mays) [TaxId: 4577]
Probab=90.77 E-value=0.044 Score=53.61 Aligned_cols=23 Identities=22% Similarity=0.301 Sum_probs=20.0
Q ss_pred CceeeCCCCCCHHHHHHHHhhcc
Q 037346 962 PLVLRGRTGSGKSTLIQTLFRIV 984 (1156)
Q Consensus 962 ~~vL~G~SGsGKSTL~~lL~rl~ 984 (1156)
.++|.|++||||||+.+.|..-|
T Consensus 5 ~I~i~GppGsGKsT~a~~La~~~ 27 (189)
T d1zaka1 5 KVMISGAPASGKGTQCELIKTKY 27 (189)
T ss_dssp CEEEEESTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 35778999999999999997776
|
| >d1z2aa1 c.37.1.8 (A:8-171) Rab23 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab23 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=90.71 E-value=0.068 Score=50.79 Aligned_cols=21 Identities=29% Similarity=0.349 Sum_probs=18.4
Q ss_pred EEEEEcCCCCChHHHHHHHhC
Q 037346 388 RVAVCGTVGSGKSSCLSCILG 408 (1156)
Q Consensus 388 ~~~ivG~~GsGKSTll~~i~g 408 (1156)
.++++|+.|+|||||++.+.+
T Consensus 4 Kv~liG~~~vGKSsLi~rl~~ 24 (164)
T d1z2aa1 4 KMVVVGNGAVGKSSMIQRYCK 24 (164)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 378999999999999987663
|
| >d2f9la1 c.37.1.8 (A:8-182) Rab11b {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab11b species: Human (Homo sapiens) [TaxId: 9606]
Probab=90.66 E-value=0.065 Score=51.59 Aligned_cols=22 Identities=36% Similarity=0.495 Sum_probs=19.2
Q ss_pred EEEEEcCCCCChHHHHHHHhCC
Q 037346 388 RVAVCGTVGSGKSSCLSCILGG 409 (1156)
Q Consensus 388 ~~~ivG~~GsGKSTll~~i~g~ 409 (1156)
.++++|+.|+|||||++.+.+.
T Consensus 6 Ki~vvG~~~vGKTsLi~~~~~~ 27 (175)
T d2f9la1 6 KVVLIGDSGVGKSNLLSRFTRN 27 (175)
T ss_dssp EEEEESSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCcCHHHHHHHHHhC
Confidence 4899999999999999987653
|
| >d1u94a1 c.37.1.11 (A:6-268) RecA protein, ATPase-domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: RecA protein, ATPase-domain species: Escherichia coli [TaxId: 562]
Probab=90.64 E-value=0.41 Score=49.11 Aligned_cols=118 Identities=20% Similarity=0.226 Sum_probs=66.6
Q ss_pred CCCceeeCCCCCCHHHHHHHHhhcccCCCce-EEEcCeeCCCCChHHHhhcCeeeccccccccccchhccCCCCCCCHHH
Q 037346 960 NLPLVLRGRTGSGKSTLIQTLFRIVESTAGH-ILIDGKDISLIGLHDLRTRLSIIPQDPTMFEGTTRSNLDPLEEHADEQ 1038 (1156)
Q Consensus 960 ~~~~vL~G~SGsGKSTL~~lL~rl~~p~~G~-I~idG~di~~i~~~~LR~~i~~VpQdp~LF~gTIr~Nl~~~~~~~dee 1038 (1156)
+.-..+.|++|||||||+..++.-..-..|. ++||... .++.+. -+.+|+=+ +|+.+..+.+.|+
T Consensus 54 g~itei~G~~gsGKTtl~l~~~~~~q~~g~~~vyidtE~--~~~~~~-a~~~Gvd~-----------d~v~~~~~~~~E~ 119 (263)
T d1u94a1 54 GRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEH--ALDPIY-ARKLGVDI-----------DNLLCSQPDTGEQ 119 (263)
T ss_dssp TSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEESSC--CCCHHH-HHHTTCCG-----------GGCEEECCSSHHH
T ss_pred ceEEEEecCCCcHHHHHHHHHHHHHHcCCCEEEEEcccc--ccCHHH-HHHhCCCH-----------HHEEEecCCCHHH
Confidence 3334566999999999998887776544444 7888765 344443 34456522 3444444556666
Q ss_pred HHHHHHHcCCChHHHhhcCCccccccccccCCCEEEEecCCcCC-----CHHH--------HHHHHHHHHHh-----cCC
Q 037346 1039 IWEALDKCQLGDEVRKKKGKLDSQGRVLLKKSKVLVLDEATASV-----DTAT--------DNQIQQTLRQH-----FSD 1100 (1156)
Q Consensus 1039 i~~al~~~~l~~~i~~lp~gl~s~ARALLr~~~ILiLDEaTS~L-----D~~t--------e~~I~~~l~~~-----~~~ 1100 (1156)
..+.++. .+.+ .+++++|+|=.++-. |.+. .+.+.+.++.+ ..+
T Consensus 120 ~~~~i~~-----l~~~-------------~~~~liViDSi~al~~~~e~~~~~~~~~~~~~a~~l~~~~~~l~~~~~~~~ 181 (263)
T d1u94a1 120 ALEICDA-----LARS-------------GAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQSN 181 (263)
T ss_dssp HHHHHHH-----HHHH-------------TCCSEEEEECGGGCCCHHHHTTC------CHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHH-----HHhc-------------CCCCEEEEECccccccchhcccccccchHHHHHHHHHHHHHHHHHhhhccC
Confidence 5554432 1211 245789999776543 1111 11233333322 137
Q ss_pred ceEEEeecC
Q 037346 1101 CTVVTIAHR 1109 (1156)
Q Consensus 1101 ~TvI~IaHr 1109 (1156)
.++|+|-|-
T Consensus 182 ~~vi~~NQv 190 (263)
T d1u94a1 182 TLLIFINQI 190 (263)
T ss_dssp CEEEEEEC-
T ss_pred ceEEEEEEE
Confidence 899999884
|
| >d1nksa_ c.37.1.1 (A:) Adenylate kinase {Archaeon Sulfolobus acidocaldarius [TaxId: 2285]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Archaeon Sulfolobus acidocaldarius [TaxId: 2285]
Probab=90.59 E-value=0.041 Score=53.39 Aligned_cols=22 Identities=32% Similarity=0.622 Sum_probs=19.8
Q ss_pred eeeCCCCCCHHHHHHHHhhccc
Q 037346 964 VLRGRTGSGKSTLIQTLFRIVE 985 (1156)
Q Consensus 964 vL~G~SGsGKSTL~~lL~rl~~ 985 (1156)
++.|.+||||||+++.|...+.
T Consensus 5 vi~G~~GsGKTT~~~~La~~L~ 26 (194)
T d1nksa_ 5 IVTGIPGVGKSTVLAKVKEILD 26 (194)
T ss_dssp EEEECTTSCHHHHHHHHHHHHH
T ss_pred EEECCCCCCHHHHHHHHHHHHH
Confidence 5679999999999999988875
|
| >d2qy9a2 c.37.1.10 (A:285-495) GTPase domain of the signal recognition particle receptor FtsY {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal recognition particle receptor FtsY species: Escherichia coli [TaxId: 562]
Probab=90.58 E-value=0.06 Score=53.52 Aligned_cols=40 Identities=15% Similarity=0.233 Sum_probs=27.7
Q ss_pred eCCeEEEEEcCCCCChHHHHHHHhCCCCCCCcEEEEcCeEEEEecC
Q 037346 384 FHGMRVAVCGTVGSGKSSCLSCILGGVPKESGIIRLCGTKAYVAQS 429 (1156)
Q Consensus 384 ~~g~~~~ivG~~GsGKSTll~~i~g~~~~~~G~i~~~g~~~~v~Q~ 429 (1156)
++-.++++|||+|+||||.+-=|+-.+. ..| -+++.+.=+
T Consensus 7 ~~p~vi~lvGptGvGKTTTiAKLA~~~~-~~g-----~kV~lit~D 46 (211)
T d2qy9a2 7 KAPFVILMVGVNGVGKTTTIGKLARQFE-QQG-----KSVMLAAGD 46 (211)
T ss_dssp CTTEEEEEECCTTSCHHHHHHHHHHHHH-TTT-----CCEEEECCC
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHH-HCC-----CcEEEEecc
Confidence 3346899999999999999877775554 333 245665543
|
| >d2qy9a2 c.37.1.10 (A:285-495) GTPase domain of the signal recognition particle receptor FtsY {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal recognition particle receptor FtsY species: Escherichia coli [TaxId: 562]
Probab=90.58 E-value=0.17 Score=50.04 Aligned_cols=23 Identities=39% Similarity=0.579 Sum_probs=18.4
Q ss_pred ceeeCCCCCCHHHHHHHHhhccc
Q 037346 963 LVLRGRTGSGKSTLIQTLFRIVE 985 (1156)
Q Consensus 963 ~vL~G~SGsGKSTL~~lL~rl~~ 985 (1156)
++|+||||+||||.+-=|+..+.
T Consensus 12 i~lvGptGvGKTTTiAKLA~~~~ 34 (211)
T d2qy9a2 12 ILMVGVNGVGKTTTIGKLARQFE 34 (211)
T ss_dssp EEEECCTTSCHHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHHH
Confidence 45689999999988777776665
|
| >d1g7sa4 c.37.1.8 (A:1-227) Initiation factor IF2/eIF5b, N-terminal (G) domain {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Initiation factor IF2/eIF5b, N-terminal (G) domain species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]
Probab=90.53 E-value=0.053 Score=54.86 Aligned_cols=22 Identities=41% Similarity=0.560 Sum_probs=20.4
Q ss_pred EEEEEcCCCCChHHHHHHHhCC
Q 037346 388 RVAVCGTVGSGKSSCLSCILGG 409 (1156)
Q Consensus 388 ~~~ivG~~GsGKSTll~~i~g~ 409 (1156)
++||+|.+++|||||++.|++.
T Consensus 7 ~IaIiGh~d~GKSTL~~~L~~~ 28 (227)
T d1g7sa4 7 IVSVLGHVDHGKTTLLDHIRGS 28 (227)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEEeCCCccHHHHHHHHHhh
Confidence 5999999999999999999874
|
| >d1upta_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARL1 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARL1 [TaxId: 9606]
Probab=90.45 E-value=0.052 Score=51.33 Aligned_cols=21 Identities=29% Similarity=0.529 Sum_probs=18.6
Q ss_pred CceeeCCCCCCHHHHHHHHhh
Q 037346 962 PLVLRGRTGSGKSTLIQTLFR 982 (1156)
Q Consensus 962 ~~vL~G~SGsGKSTL~~lL~r 982 (1156)
.+++.|++|+|||||++.+.+
T Consensus 7 kI~ivG~~~vGKSSLi~~~~~ 27 (169)
T d1upta_ 7 RILILGLDGAGKTTILYRLQV 27 (169)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhC
Confidence 368899999999999999865
|
| >d1yj5a2 c.37.1.1 (A:351-522) 5' polynucleotide kinase-3' phosphatase, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: 5' polynucleotide kinase-3' phosphatase, C-terminal domain species: Mouse (Mus musculus) [TaxId: 10090]
Probab=90.43 E-value=0.052 Score=52.38 Aligned_cols=20 Identities=45% Similarity=0.574 Sum_probs=16.9
Q ss_pred ceeeCCCCCCHHHHHHHHhh
Q 037346 963 LVLRGRTGSGKSTLIQTLFR 982 (1156)
Q Consensus 963 ~vL~G~SGsGKSTL~~lL~r 982 (1156)
+++.|.+||||||+++-|+.
T Consensus 17 iil~G~pGsGKST~a~~l~~ 36 (172)
T d1yj5a2 17 VVAVGFPGAGKSTFIQEHLV 36 (172)
T ss_dssp EEEECCTTSSHHHHHHHHTG
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 45679999999999998754
|
| >d1qf9a_ c.37.1.1 (A:) UMP/CMP kinase {Dictyostelium discoideum [TaxId: 44689]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: UMP/CMP kinase species: Dictyostelium discoideum [TaxId: 44689]
Probab=90.40 E-value=0.047 Score=53.56 Aligned_cols=28 Identities=29% Similarity=0.483 Sum_probs=22.1
Q ss_pred ceeeCCCCCCHHHHHHHHhhcccCCCceEEEc
Q 037346 963 LVLRGRTGSGKSTLIQTLFRIVESTAGHILID 994 (1156)
Q Consensus 963 ~vL~G~SGsGKSTL~~lL~rl~~p~~G~I~id 994 (1156)
++|.|+.||||||+.+.|..-| |-+.|+
T Consensus 9 I~i~G~pGSGKsT~a~~La~~~----g~~~i~ 36 (194)
T d1qf9a_ 9 VFVLGGPGSGKGTQCANIVRDF----GWVHLS 36 (194)
T ss_dssp EEEEESTTSSHHHHHHHHHHHH----CCEEEE
T ss_pred EEEECCCCCCHHHHHHHHHHHH----CCceEc
Confidence 3567999999999999998766 445554
|
| >d2fnaa2 c.37.1.20 (A:1-283) Archaeal ATPase SSO1545 {Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Archaeal ATPase SSO1545 species: Sulfolobus solfataricus [TaxId: 2287]
Probab=90.38 E-value=0.063 Score=55.41 Aligned_cols=26 Identities=23% Similarity=0.199 Sum_probs=22.6
Q ss_pred CCeEEEEEcCCCCChHHHHHHHhCCC
Q 037346 385 HGMRVAVCGTVGSGKSSCLSCILGGV 410 (1156)
Q Consensus 385 ~g~~~~ivG~~GsGKSTll~~i~g~~ 410 (1156)
.+..+.|.||.|+|||||++.++...
T Consensus 28 ~~~~i~i~G~~G~GKTsLl~~~~~~~ 53 (283)
T d2fnaa2 28 RAPITLVLGLRRTGKSSIIKIGINEL 53 (283)
T ss_dssp CSSEEEEEESTTSSHHHHHHHHHHHH
T ss_pred cCCEEEEEcCCCCcHHHHHHHHHHHC
Confidence 56789999999999999999887654
|
| >d2a5ja1 c.37.1.8 (A:9-181) Rab2b {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab2b species: Human (Homo sapiens) [TaxId: 9606]
Probab=90.35 E-value=0.059 Score=51.82 Aligned_cols=22 Identities=27% Similarity=0.362 Sum_probs=19.1
Q ss_pred EEEEEcCCCCChHHHHHHHhCC
Q 037346 388 RVAVCGTVGSGKSSCLSCILGG 409 (1156)
Q Consensus 388 ~~~ivG~~GsGKSTll~~i~g~ 409 (1156)
.++|+|+.|+|||||++.+.+.
T Consensus 5 KivvvG~~~vGKTsli~r~~~~ 26 (173)
T d2a5ja1 5 KYIIIGDTGVGKSCLLLQFTDK 26 (173)
T ss_dssp EEEEESSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCcCHHHHHHHHhcC
Confidence 4789999999999999987644
|
| >d1g16a_ c.37.1.8 (A:) Rab-related protein Sec4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-related protein Sec4 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=90.32 E-value=0.072 Score=50.68 Aligned_cols=22 Identities=27% Similarity=0.456 Sum_probs=19.3
Q ss_pred EEEEEcCCCCChHHHHHHHhCC
Q 037346 388 RVAVCGTVGSGKSSCLSCILGG 409 (1156)
Q Consensus 388 ~~~ivG~~GsGKSTll~~i~g~ 409 (1156)
.++++|++|+|||||++.+.+.
T Consensus 4 Ki~vvG~~~vGKTSli~~l~~~ 25 (166)
T d1g16a_ 4 KILLIGDSGVGKSCLLVRFVED 25 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHHHC
T ss_pred EEEEECCCCcCHHHHHHHHHhC
Confidence 3789999999999999987754
|
| >d1puia_ c.37.1.8 (A:) Probable GTPase EngB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngB species: Escherichia coli [TaxId: 562]
Probab=90.31 E-value=0.031 Score=54.20 Aligned_cols=22 Identities=32% Similarity=0.522 Sum_probs=19.4
Q ss_pred ceeeCCCCCCHHHHHHHHhhcc
Q 037346 963 LVLRGRTGSGKSTLIQTLFRIV 984 (1156)
Q Consensus 963 ~vL~G~SGsGKSTL~~lL~rl~ 984 (1156)
++|.|++++|||||++.|.+-.
T Consensus 19 I~lvG~~NvGKSSL~n~L~~~~ 40 (188)
T d1puia_ 19 VAFAGRSNAGKSSALNTLTNQK 40 (188)
T ss_dssp EEEEECTTSSHHHHHTTTCCC-
T ss_pred EEEECCCCCCHHHHHHHHhCCC
Confidence 6889999999999999998853
|
| >d1xtqa1 c.37.1.8 (A:3-169) GTP-binding protein RheB {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein RheB species: Human (Homo sapiens) [TaxId: 9606]
Probab=90.31 E-value=0.074 Score=50.64 Aligned_cols=21 Identities=29% Similarity=0.336 Sum_probs=19.0
Q ss_pred EEEEEcCCCCChHHHHHHHhC
Q 037346 388 RVAVCGTVGSGKSSCLSCILG 408 (1156)
Q Consensus 388 ~~~ivG~~GsGKSTll~~i~g 408 (1156)
.++|+|+.|+|||||++.+.+
T Consensus 6 Kv~liG~~~vGKTsLl~~~~~ 26 (167)
T d1xtqa1 6 KIAILGYRSVGKSSLTIQFVE 26 (167)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 689999999999999998764
|
| >d2f7sa1 c.37.1.8 (A:5-190) Rab27b {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab27b species: Human (Homo sapiens) [TaxId: 9606]
Probab=90.24 E-value=0.069 Score=51.92 Aligned_cols=22 Identities=23% Similarity=0.357 Sum_probs=19.4
Q ss_pred EEEEEcCCCCChHHHHHHHhCC
Q 037346 388 RVAVCGTVGSGKSSCLSCILGG 409 (1156)
Q Consensus 388 ~~~ivG~~GsGKSTll~~i~g~ 409 (1156)
.++|+|+.|+|||||++.+.+.
T Consensus 7 Ki~ivG~~~vGKTsLi~~l~~~ 28 (186)
T d2f7sa1 7 KLLALGDSGVGKTTFLYRYTDN 28 (186)
T ss_dssp EEEEESCTTSSHHHHHHHHHCS
T ss_pred EEEEECCCCcCHHHHHHHHhcC
Confidence 3889999999999999988753
|
| >d1kaoa_ c.37.1.8 (A:) Rap2a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rap2a species: Human (Homo sapiens) [TaxId: 9606]
Probab=90.22 E-value=0.078 Score=50.48 Aligned_cols=22 Identities=36% Similarity=0.511 Sum_probs=19.5
Q ss_pred EEEEEcCCCCChHHHHHHHhCC
Q 037346 388 RVAVCGTVGSGKSSCLSCILGG 409 (1156)
Q Consensus 388 ~~~ivG~~GsGKSTll~~i~g~ 409 (1156)
.++|+|+.|+|||||++.+.+.
T Consensus 5 Ki~lvG~~~vGKTsLi~r~~~~ 26 (167)
T d1kaoa_ 5 KVVVLGSGGVGKSALTVQFVTG 26 (167)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCcCHHHHHHHHHhC
Confidence 5899999999999999988754
|
| >d2vp4a1 c.37.1.1 (A:12-208) Deoxyribonucleoside kinase {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Deoxyribonucleoside kinase species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=90.18 E-value=0.053 Score=53.29 Aligned_cols=22 Identities=27% Similarity=0.566 Sum_probs=19.0
Q ss_pred ceeeCCCCCCHHHHHHHHhhcc
Q 037346 963 LVLRGRTGSGKSTLIQTLFRIV 984 (1156)
Q Consensus 963 ~vL~G~SGsGKSTL~~lL~rl~ 984 (1156)
+++.|..||||||+++.|.+.+
T Consensus 12 I~ieG~~GsGKTTl~~~L~~~l 33 (197)
T d2vp4a1 12 VLIEGNIGSGKTTYLNHFEKYK 33 (197)
T ss_dssp EEEECSTTSCHHHHHHTTGGGT
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 3566999999999999998765
|
| >d2qtvb1 c.37.1.8 (B:24-189) SAR1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: SAR1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=90.16 E-value=0.054 Score=50.87 Aligned_cols=22 Identities=32% Similarity=0.445 Sum_probs=19.3
Q ss_pred CceeeCCCCCCHHHHHHHHhhc
Q 037346 962 PLVLRGRTGSGKSTLIQTLFRI 983 (1156)
Q Consensus 962 ~~vL~G~SGsGKSTL~~lL~rl 983 (1156)
+++|.|++|+|||||++.|.+=
T Consensus 2 KI~liG~~nvGKSSLln~l~~~ 23 (166)
T d2qtvb1 2 KLLFLGLDNAGKTTLLHMLKND 23 (166)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 3678999999999999999873
|
| >d1lv7a_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: AAA domain of cell division protein FtsH species: Escherichia coli [TaxId: 562]
Probab=90.16 E-value=0.048 Score=56.27 Aligned_cols=27 Identities=26% Similarity=0.320 Sum_probs=23.0
Q ss_pred CCeEEEEEcCCCCChHHHHHHHhCCCC
Q 037346 385 HGMRVAVCGTVGSGKSSCLSCILGGVP 411 (1156)
Q Consensus 385 ~g~~~~ivG~~GsGKSTll~~i~g~~~ 411 (1156)
...-+.+.||+|||||++.+.|+.++.
T Consensus 44 ~~~~iLL~GppGtGKT~la~~iA~~~~ 70 (256)
T d1lv7a_ 44 IPKGVLMVGPPGTGKTLLAKAIAGEAK 70 (256)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHHT
T ss_pred CCCeEEeeCCCCCCccHHHHHHHHHcC
Confidence 334578999999999999999998764
|
| >d1vg8a_ c.37.1.8 (A:) Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab7 species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=90.15 E-value=0.061 Score=52.22 Aligned_cols=21 Identities=29% Similarity=0.523 Sum_probs=18.6
Q ss_pred EEEEEcCCCCChHHHHHHHhC
Q 037346 388 RVAVCGTVGSGKSSCLSCILG 408 (1156)
Q Consensus 388 ~~~ivG~~GsGKSTll~~i~g 408 (1156)
.++|+|..|+|||||++.+.+
T Consensus 4 Kv~vvG~~~vGKSSLi~~l~~ 24 (184)
T d1vg8a_ 4 KVIILGDSGVGKTSLMNQYVN 24 (184)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 478999999999999987774
|
| >d1iqpa2 c.37.1.20 (A:2-232) Replication factor C {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=90.06 E-value=0.063 Score=54.25 Aligned_cols=24 Identities=17% Similarity=0.288 Sum_probs=21.2
Q ss_pred EEEEEcCCCCChHHHHHHHhCCCC
Q 037346 388 RVAVCGTVGSGKSSCLSCILGGVP 411 (1156)
Q Consensus 388 ~~~ivG~~GsGKSTll~~i~g~~~ 411 (1156)
.+.+.||+|+||||++++|+.++.
T Consensus 47 ~lll~Gp~G~GKTtla~~iak~l~ 70 (231)
T d1iqpa2 47 HLLFAGPPGVGKTTAALALARELF 70 (231)
T ss_dssp EEEEESCTTSSHHHHHHHHHHHHH
T ss_pred eEEEECCCCCcHHHHHHHHHHHHH
Confidence 378999999999999999998653
|
| >d1ls1a2 c.37.1.10 (A:89-295) GTPase domain of the signal sequence recognition protein Ffh {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal sequence recognition protein Ffh species: Thermus aquaticus [TaxId: 271]
Probab=90.05 E-value=0.08 Score=52.55 Aligned_cols=27 Identities=19% Similarity=0.069 Sum_probs=21.9
Q ss_pred CCeEEEEEcCCCCChHHHHHHHhCCCC
Q 037346 385 HGMRVAVCGTVGSGKSSCLSCILGGVP 411 (1156)
Q Consensus 385 ~g~~~~ivG~~GsGKSTll~~i~g~~~ 411 (1156)
++.+++++||+|+||||.+--|+..+.
T Consensus 9 ~~~vi~lvGp~GvGKTTTiaKLA~~~~ 35 (207)
T d1ls1a2 9 DRNLWFLVGLQGSGKTTTAAKLALYYK 35 (207)
T ss_dssp SSEEEEEECCTTTTHHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHH
Confidence 356889999999999999877775553
|
| >d1zina1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=90.04 E-value=0.058 Score=52.11 Aligned_cols=22 Identities=36% Similarity=0.522 Sum_probs=19.4
Q ss_pred ceeeCCCCCCHHHHHHHHhhcc
Q 037346 963 LVLRGRTGSGKSTLIQTLFRIV 984 (1156)
Q Consensus 963 ~vL~G~SGsGKSTL~~lL~rl~ 984 (1156)
++|.|+.||||||+.+.|.--|
T Consensus 3 I~i~G~pGSGKsT~a~~La~~~ 24 (182)
T d1zina1 3 LVLMGLPGAGKGTQAEKIVAAY 24 (182)
T ss_dssp EEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHH
Confidence 5788999999999999997665
|
| >d2g3ya1 c.37.1.8 (A:73-244) GTP-binding protein GEM {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein GEM species: Human (Homo sapiens) [TaxId: 9606]
Probab=89.97 E-value=0.097 Score=50.19 Aligned_cols=24 Identities=33% Similarity=0.425 Sum_probs=20.9
Q ss_pred EEEEEcCCCCChHHHHHHHhCCCC
Q 037346 388 RVAVCGTVGSGKSSCLSCILGGVP 411 (1156)
Q Consensus 388 ~~~ivG~~GsGKSTll~~i~g~~~ 411 (1156)
.++++|..|+|||||++.+.+...
T Consensus 5 Kv~lvG~~~vGKTsLi~~~~~~~~ 28 (172)
T d2g3ya1 5 RVVLIGEQGVGKSTLANIFAGVHD 28 (172)
T ss_dssp EEEEECCTTSSHHHHHHHHHCCCC
T ss_pred EEEEECCCCcCHHHHHHHHHhCcC
Confidence 478999999999999999987543
|
| >d2gjsa1 c.37.1.8 (A:91-258) Rad {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rad species: Human (Homo sapiens) [TaxId: 9606]
Probab=89.96 E-value=0.076 Score=50.74 Aligned_cols=23 Identities=30% Similarity=0.339 Sum_probs=20.1
Q ss_pred EEEEEcCCCCChHHHHHHHhCCC
Q 037346 388 RVAVCGTVGSGKSSCLSCILGGV 410 (1156)
Q Consensus 388 ~~~ivG~~GsGKSTll~~i~g~~ 410 (1156)
.++++|+.|+|||||++.+.+..
T Consensus 3 Ki~lvG~~~vGKTsLi~~~~~~~ 25 (168)
T d2gjsa1 3 KVLLLGAPGVGKSALARIFGGVE 25 (168)
T ss_dssp EEEEECCTTSSHHHHHHHHHTC-
T ss_pred EEEEECCCCcCHHHHHHHHhCCc
Confidence 47899999999999999998764
|
| >d1a1va1 c.37.1.14 (A:190-325) HCV helicase domain {Human hepatitis C virus (HCV), different isolates [TaxId: 11103]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RNA helicase domain: HCV helicase domain species: Human hepatitis C virus (HCV), different isolates [TaxId: 11103]
Probab=89.94 E-value=0.29 Score=44.54 Aligned_cols=32 Identities=22% Similarity=0.179 Sum_probs=25.0
Q ss_pred ccccCCCEEEEecCCcCCCHHHHHHHHHHHHHh
Q 037346 1065 VLLKKSKVLVLDEATASVDTATDNQIQQTLRQH 1097 (1156)
Q Consensus 1065 ALLr~~~ILiLDEaTS~LD~~te~~I~~~l~~~ 1097 (1156)
-.+++-+++|+||+= .+|..+...+...++..
T Consensus 90 ~~~~~~~~vIiDE~H-~~~~~~~~~~~~~l~~~ 121 (136)
T d1a1va1 90 CSGGAYDIIICDECH-STDATSILGIGTVLDQA 121 (136)
T ss_dssp GGGCCCSEEEEETTT-CCSHHHHHHHHHHHHHT
T ss_pred hhhhcCCEEEEeccc-ccCHHHHHHHHHHHHHH
Confidence 445677999999996 57999988887777654
|
| >d1ofha_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: HslU species: Haemophilus influenzae [TaxId: 727]
Probab=89.93 E-value=0.057 Score=57.47 Aligned_cols=25 Identities=16% Similarity=0.211 Sum_probs=21.4
Q ss_pred eEEEEEcCCCCChHHHHHHHhCCCC
Q 037346 387 MRVAVCGTVGSGKSSCLSCILGGVP 411 (1156)
Q Consensus 387 ~~~~ivG~~GsGKSTll~~i~g~~~ 411 (1156)
.-+.++||+|||||.|.++|+.++.
T Consensus 50 ~~iLl~GPpG~GKT~lAkalA~~~~ 74 (309)
T d1ofha_ 50 KNILMIGPTGVGKTEIARRLAKLAN 74 (309)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHHT
T ss_pred ceEEEECCCCCCHHHHHHHHhhccc
Confidence 4556899999999999999998753
|
| >d1yrba1 c.37.1.10 (A:1-244) ATP(GTP)-binding protein PAB0955 {Pyrococcus abyssi [TaxId: 29292]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: ATP(GTP)-binding protein PAB0955 species: Pyrococcus abyssi [TaxId: 29292]
Probab=89.92 E-value=0.079 Score=53.66 Aligned_cols=22 Identities=41% Similarity=0.602 Sum_probs=19.0
Q ss_pred ceeeCCCCCCHHHHHHHHhhcc
Q 037346 963 LVLRGRTGSGKSTLIQTLFRIV 984 (1156)
Q Consensus 963 ~vL~G~SGsGKSTL~~lL~rl~ 984 (1156)
+++.|+.|||||||++.|.+..
T Consensus 3 i~v~G~~GsGKTTLl~~ll~~~ 24 (244)
T d1yrba1 3 VVFVGTAGSGKTTLTGEFGRYL 24 (244)
T ss_dssp EEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEcCCCCcHHHHHHHHHHHH
Confidence 3577999999999999998754
|
| >d1ixsb2 c.37.1.20 (B:4-242) Holliday junction helicase RuvB {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Holliday junction helicase RuvB species: Thermus thermophilus [TaxId: 274]
Probab=89.79 E-value=0.046 Score=55.64 Aligned_cols=23 Identities=22% Similarity=0.316 Sum_probs=20.8
Q ss_pred EEEEcCCCCChHHHHHHHhCCCC
Q 037346 389 VAVCGTVGSGKSSCLSCILGGVP 411 (1156)
Q Consensus 389 ~~ivG~~GsGKSTll~~i~g~~~ 411 (1156)
+.+.||.|+||||+.+++++++.
T Consensus 38 ~Ll~GPpG~GKTtla~~la~~~~ 60 (239)
T d1ixsb2 38 LLLFGPPGLGKTTLAHVIAHELG 60 (239)
T ss_dssp EEEECCTTSCHHHHHHHHHHHHT
T ss_pred EEEECCCCCCHHHHHHHHHHHhC
Confidence 56999999999999999998764
|
| >d1knxa2 c.91.1.2 (A:133-309) HPr kinase HprK C-terminal domain {Mycoplasma pneumoniae [TaxId: 2104]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PEP carboxykinase-like superfamily: PEP carboxykinase-like family: HPr kinase HprK C-terminal domain domain: HPr kinase HprK C-terminal domain species: Mycoplasma pneumoniae [TaxId: 2104]
Probab=89.79 E-value=0.11 Score=49.98 Aligned_cols=41 Identities=24% Similarity=0.443 Sum_probs=29.8
Q ss_pred ccccceEEeeCCeEEEEEcCCCCChHHHHHHHhCCCCCCCcEEEEcC
Q 037346 375 TLRNINLKVFHGMRVAVCGTVGSGKSSCLSCILGGVPKESGIIRLCG 421 (1156)
Q Consensus 375 ~l~~i~l~i~~g~~~~ivG~~GsGKSTll~~i~g~~~~~~G~i~~~g 421 (1156)
.++.--+.+ .|.-+.|.|++|+||||+...+.. .|.-.+.+
T Consensus 5 ~~H~~~v~~-~g~gvli~G~sG~GKS~lal~l~~-----~G~~lvaD 45 (177)
T d1knxa2 5 QIHGVLLEV-FGVGVLLTGRSGIGKSECALDLIN-----KNHLFVGD 45 (177)
T ss_dssp EEEEEEEEE-TTEEEEEEESSSSSHHHHHHHHHT-----TTCEEEEE
T ss_pred eEEEEEEEE-CCEEEEEEcCCCCCHHHHHHHHHH-----cCCceecC
Confidence 345555555 788899999999999999987763 45544433
|
| >d1u8za_ c.37.1.8 (A:) Ras-related protein RalA {Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ras-related protein RalA species: Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]
Probab=89.74 E-value=0.13 Score=48.94 Aligned_cols=21 Identities=29% Similarity=0.365 Sum_probs=18.7
Q ss_pred EEEEEcCCCCChHHHHHHHhC
Q 037346 388 RVAVCGTVGSGKSSCLSCILG 408 (1156)
Q Consensus 388 ~~~ivG~~GsGKSTll~~i~g 408 (1156)
.++|+|..|+|||||++.+.+
T Consensus 6 KivlvG~~~vGKTsli~~~~~ 26 (168)
T d1u8za_ 6 KVIMVGSGGVGKSALTLQFMY 26 (168)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 588999999999999998753
|
| >d1z06a1 c.37.1.8 (A:32-196) Rab-33b {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-33b species: Mouse (Mus musculus) [TaxId: 10090]
Probab=89.68 E-value=0.1 Score=49.34 Aligned_cols=23 Identities=22% Similarity=0.320 Sum_probs=19.3
Q ss_pred EEEEEcCCCCChHHHHHHHh-CCC
Q 037346 388 RVAVCGTVGSGKSSCLSCIL-GGV 410 (1156)
Q Consensus 388 ~~~ivG~~GsGKSTll~~i~-g~~ 410 (1156)
.++++|..|+|||||++.+. |..
T Consensus 4 Kv~liG~~~vGKTsLl~~~~~~~~ 27 (165)
T d1z06a1 4 KIIVIGDSNVGKTCLTYRFCAGRF 27 (165)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSSC
T ss_pred EEEEECCCCcCHHHHHHHHHhCCC
Confidence 37899999999999999776 443
|
| >d1vmaa2 c.37.1.10 (A:82-294) GTPase domain of the signal recognition particle receptor FtsY {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal recognition particle receptor FtsY species: Thermotoga maritima [TaxId: 2336]
Probab=89.62 E-value=0.16 Score=50.51 Aligned_cols=26 Identities=31% Similarity=0.615 Sum_probs=18.2
Q ss_pred CCCC--ceeeCCCCCCHHHHHHHHhhcc
Q 037346 959 PNLP--LVLRGRTGSGKSTLIQTLFRIV 984 (1156)
Q Consensus 959 ~~~~--~vL~G~SGsGKSTL~~lL~rl~ 984 (1156)
+..| ++++||||+||||.+-=|+..+
T Consensus 8 ~~~p~vi~lvGptGvGKTTTiAKLAa~~ 35 (213)
T d1vmaa2 8 PEPPFVIMVVGVNGTGKTTSCGKLAKMF 35 (213)
T ss_dssp SSSCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHHH
Confidence 4444 3568999999998766555544
|
| >d1kk1a3 c.37.1.8 (A:6-200) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Archaeon Pyrococcus abyssi [TaxId: 29292]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain species: Archaeon Pyrococcus abyssi [TaxId: 29292]
Probab=89.57 E-value=0.089 Score=51.69 Aligned_cols=22 Identities=23% Similarity=0.419 Sum_probs=20.4
Q ss_pred EEEEcCCCCChHHHHHHHhCCC
Q 037346 389 VAVCGTVGSGKSSCLSCILGGV 410 (1156)
Q Consensus 389 ~~ivG~~GsGKSTll~~i~g~~ 410 (1156)
+||+|...+|||||++.|+|..
T Consensus 8 IaiiGhvd~GKSTL~~~L~g~~ 29 (195)
T d1kk1a3 8 IGMVGHVDHGKTTLTKALTGVW 29 (195)
T ss_dssp EEEECSTTSSHHHHHHHHHTCC
T ss_pred EEEEeccCCcHHHHHHHHHhhh
Confidence 7999999999999999999864
|
| >d1x1ra1 c.37.1.8 (A:10-178) Ras-related protein M-Ras (XRas) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ras-related protein M-Ras (XRas) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=89.48 E-value=0.13 Score=49.05 Aligned_cols=21 Identities=29% Similarity=0.398 Sum_probs=18.6
Q ss_pred EEEEEcCCCCChHHHHHHHhC
Q 037346 388 RVAVCGTVGSGKSSCLSCILG 408 (1156)
Q Consensus 388 ~~~ivG~~GsGKSTll~~i~g 408 (1156)
.++++|..|+|||||++.+.+
T Consensus 6 Ki~lvG~~~vGKTsll~~~~~ 26 (169)
T d1x1ra1 6 KLVVVGDGGVGKSALTIQFFQ 26 (169)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 478999999999999998765
|
| >d2ew1a1 c.37.1.8 (A:4-174) Rab30 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab30 species: Human (Homo sapiens) [TaxId: 9606]
Probab=89.44 E-value=0.093 Score=50.17 Aligned_cols=21 Identities=19% Similarity=0.436 Sum_probs=19.1
Q ss_pred EEEEEcCCCCChHHHHHHHhC
Q 037346 388 RVAVCGTVGSGKSSCLSCILG 408 (1156)
Q Consensus 388 ~~~ivG~~GsGKSTll~~i~g 408 (1156)
.++|+|+.|+|||||++.+.+
T Consensus 7 Ki~lvG~~~vGKTsLi~~l~~ 27 (171)
T d2ew1a1 7 KIVLIGNAGVGKTCLVRRFTQ 27 (171)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 489999999999999998875
|
| >d1z0fa1 c.37.1.8 (A:8-173) Rab14 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab14 species: Human (Homo sapiens) [TaxId: 9606]
Probab=89.42 E-value=0.1 Score=49.66 Aligned_cols=22 Identities=27% Similarity=0.401 Sum_probs=19.1
Q ss_pred EEEEEcCCCCChHHHHHHHhCC
Q 037346 388 RVAVCGTVGSGKSSCLSCILGG 409 (1156)
Q Consensus 388 ~~~ivG~~GsGKSTll~~i~g~ 409 (1156)
.++|+|..|+|||||++.+.+.
T Consensus 6 KivlvG~~~vGKTsli~~~~~~ 27 (166)
T d1z0fa1 6 KYIIIGDMGVGKSCLLHQFTEK 27 (166)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCcCHHHHHHHHHhC
Confidence 4889999999999999887753
|
| >d1odfa_ c.37.1.6 (A:) Hypothetical protein Ygr205W {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Hypothetical protein Ygr205W species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=89.37 E-value=0.082 Score=55.09 Aligned_cols=22 Identities=32% Similarity=0.262 Sum_probs=19.2
Q ss_pred EEEEEcCCCCChHHHHHHHhCC
Q 037346 388 RVAVCGTVGSGKSSCLSCILGG 409 (1156)
Q Consensus 388 ~~~ivG~~GsGKSTll~~i~g~ 409 (1156)
++||.|+.|||||||...|.-.
T Consensus 29 iIGi~G~qGSGKSTl~~~l~~~ 50 (286)
T d1odfa_ 29 FIFFSGPQGSGKSFTSIQIYNH 50 (286)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEeECCCCCCHHHHHHHHHHH
Confidence 8899999999999999877543
|
| >d1gsia_ c.37.1.1 (A:) Thymidylate kinase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=89.35 E-value=0.085 Score=52.16 Aligned_cols=24 Identities=25% Similarity=0.426 Sum_probs=20.9
Q ss_pred EEEEEcCCCCChHHHHHHHhCCCC
Q 037346 388 RVAVCGTVGSGKSSCLSCILGGVP 411 (1156)
Q Consensus 388 ~~~ivG~~GsGKSTll~~i~g~~~ 411 (1156)
+++|-|.-||||||+++.|...+.
T Consensus 2 lI~ieG~dGsGKST~~~~L~~~l~ 25 (208)
T d1gsia_ 2 LIAIEGVDGAGKRTLVEKLSGAFR 25 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
Confidence 588999999999999999986553
|
| >d1xzpa2 c.37.1.8 (A:212-371) TrmE GTPase domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: TrmE GTPase domain species: Thermotoga maritima [TaxId: 2336]
Probab=89.34 E-value=0.027 Score=53.39 Aligned_cols=21 Identities=38% Similarity=0.654 Sum_probs=19.1
Q ss_pred ceeeCCCCCCHHHHHHHHhhc
Q 037346 963 LVLRGRTGSGKSTLIQTLFRI 983 (1156)
Q Consensus 963 ~vL~G~SGsGKSTL~~lL~rl 983 (1156)
++|.|++|+|||||++.|.|-
T Consensus 3 I~liG~~n~GKSSLin~l~g~ 23 (160)
T d1xzpa2 3 MVIVGKPNVGKSTLLNRLLNE 23 (160)
T ss_dssp EEEECCHHHHTCHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHhCC
Confidence 578899999999999999874
|
| >d1sq5a_ c.37.1.6 (A:) Pantothenate kinase PanK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Pantothenate kinase PanK species: Escherichia coli [TaxId: 562]
Probab=89.33 E-value=0.059 Score=56.95 Aligned_cols=45 Identities=20% Similarity=0.318 Sum_probs=31.1
Q ss_pred ceeeCCCCCCHHHHHHHHhhcccCCCceEEEcCeeCCCCChHHHhhcCeeeccccccccccc
Q 037346 963 LVLRGRTGSGKSTLIQTLFRIVESTAGHILIDGKDISLIGLHDLRTRLSIIPQDPTMFEGTT 1024 (1156)
Q Consensus 963 ~vL~G~SGsGKSTL~~lL~rl~~p~~G~I~idG~di~~i~~~~LR~~i~~VpQdp~LF~gTI 1024 (1156)
++|.|++||||||+.+.|..+..-..+ ..++.+|++|.++.+...
T Consensus 83 IGIaG~sgSGKSTla~~L~~lL~~~~~-----------------~~~v~~Is~D~F~~~~~~ 127 (308)
T d1sq5a_ 83 ISIAGSVAVGKSTTARVLQALLSRWPE-----------------HRRVELITTDGFLHPNQV 127 (308)
T ss_dssp EEEEECTTSSHHHHHHHHHHHHTTSTT-----------------CCCEEEEEGGGGBCCHHH
T ss_pred EEEeCCCCCCCcHHHHHHHHHHhhhcC-----------------CCceEEEeeeeeECCchH
Confidence 357799999999999999887642111 023567777777765443
|
| >d1gvnb_ c.37.1.21 (B:) Plasmid maintenance system epsilon/zeta, toxin zeta subunit {Streptococcus pyogenes [TaxId: 1314]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Plasmid maintenance system epsilon/zeta, toxin zeta subunit domain: Plasmid maintenance system epsilon/zeta, toxin zeta subunit species: Streptococcus pyogenes [TaxId: 1314]
Probab=89.29 E-value=0.064 Score=55.44 Aligned_cols=31 Identities=35% Similarity=0.667 Sum_probs=24.3
Q ss_pred ceeeCCCCCCHHHHHHHHhhcccCCCceEEEcC
Q 037346 963 LVLRGRTGSGKSTLIQTLFRIVESTAGHILIDG 995 (1156)
Q Consensus 963 ~vL~G~SGsGKSTL~~lL~rl~~p~~G~I~idG 995 (1156)
+.|.||+|||||||++.|++-+. .+-+.+++
T Consensus 35 ilL~GpPGtGKT~la~~la~~~~--~~~~~i~~ 65 (273)
T d1gvnb_ 35 FLLGGQPGSGKTSLRSAIFEETQ--GNVIVIDN 65 (273)
T ss_dssp EEEECCTTSCTHHHHHHHHHHTT--TCCEEECT
T ss_pred EEEECCCCCCHHHHHHHHHHHhh--cceEEEec
Confidence 46889999999999999999764 33455554
|
| >d1s3ga1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus globisporus [TaxId: 1459]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Bacillus globisporus [TaxId: 1459]
Probab=89.28 E-value=0.072 Score=51.62 Aligned_cols=22 Identities=32% Similarity=0.483 Sum_probs=19.9
Q ss_pred ceeeCCCCCCHHHHHHHHhhcc
Q 037346 963 LVLRGRTGSGKSTLIQTLFRIV 984 (1156)
Q Consensus 963 ~vL~G~SGsGKSTL~~lL~rl~ 984 (1156)
++|.|+.||||||+.+.|..-|
T Consensus 3 I~i~G~pGSGKsT~a~~La~~~ 24 (182)
T d1s3ga1 3 IVLMGLPGAGKGTQADRIVEKY 24 (182)
T ss_dssp EEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHH
Confidence 5688999999999999998876
|
| >d2erxa1 c.37.1.8 (A:6-176) di-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: di-Ras2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=89.27 E-value=0.14 Score=48.87 Aligned_cols=20 Identities=30% Similarity=0.577 Sum_probs=17.6
Q ss_pred ceeeCCCCCCHHHHHHHHhh
Q 037346 963 LVLRGRTGSGKSTLIQTLFR 982 (1156)
Q Consensus 963 ~vL~G~SGsGKSTL~~lL~r 982 (1156)
+++.|.+|+|||||++.+.+
T Consensus 5 i~viG~~~vGKTsLi~r~~~ 24 (171)
T d2erxa1 5 VAVFGAGGVGKSSLVLRFVK 24 (171)
T ss_dssp EEEECCTTSSHHHHHHHHHT
T ss_pred EEEECCCCCCHHHHHHHHHh
Confidence 57889999999999997764
|
| >d1q3ta_ c.37.1.1 (A:) CMP kinase {Streptococcus pneumoniae [TaxId: 1313]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: CMP kinase species: Streptococcus pneumoniae [TaxId: 1313]
Probab=89.25 E-value=0.071 Score=53.38 Aligned_cols=22 Identities=27% Similarity=0.459 Sum_probs=18.7
Q ss_pred ceeeCCCCCCHHHHHHHHhhcc
Q 037346 963 LVLRGRTGSGKSTLIQTLFRIV 984 (1156)
Q Consensus 963 ~vL~G~SGsGKSTL~~lL~rl~ 984 (1156)
+++.||+||||||+.++|.--|
T Consensus 6 IaIdGp~GsGKgT~ak~La~~l 27 (223)
T d1q3ta_ 6 IAIDGPASSGKSTVAKIIAKDF 27 (223)
T ss_dssp EEEECSSCSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 4567999999999999997655
|
| >d1sxjd2 c.37.1.20 (D:26-262) Replication factor C2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C2 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=89.24 E-value=0.08 Score=53.50 Aligned_cols=22 Identities=23% Similarity=0.434 Sum_probs=20.3
Q ss_pred EEEEcCCCCChHHHHHHHhCCC
Q 037346 389 VAVCGTVGSGKSSCLSCILGGV 410 (1156)
Q Consensus 389 ~~ivG~~GsGKSTll~~i~g~~ 410 (1156)
+.+.||+|+||||++++++.++
T Consensus 36 lll~Gp~G~GKTtl~~~i~~~l 57 (237)
T d1sxjd2 36 MLFYGPPGTGKTSTILALTKEL 57 (237)
T ss_dssp EEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCChHHHHHHHHHHH
Confidence 7899999999999999999864
|
| >d1fnna2 c.37.1.20 (A:1-276) CDC6, N-domain {Archaeon Pyrobaculum aerophilum [TaxId: 13773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: CDC6, N-domain species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]
Probab=89.09 E-value=0.082 Score=54.35 Aligned_cols=28 Identities=21% Similarity=0.302 Sum_probs=24.1
Q ss_pred eEEEEEcCCCCChHHHHHHHhCCCCCCC
Q 037346 387 MRVAVCGTVGSGKSSCLSCILGGVPKES 414 (1156)
Q Consensus 387 ~~~~ivG~~GsGKSTll~~i~g~~~~~~ 414 (1156)
..+.|.||.|+||||+++.++..++...
T Consensus 44 ~~lll~GppGtGKT~l~~~l~~~l~~~~ 71 (276)
T d1fnna2 44 PRATLLGRPGTGKTVTLRKLWELYKDKT 71 (276)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHTTSC
T ss_pred CceEEECCCCCCHHHHHHHHHHHHhccc
Confidence 4789999999999999999998876443
|
| >d1wmsa_ c.37.1.8 (A:) Rab9a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab9a species: Human (Homo sapiens) [TaxId: 9606]
Probab=89.07 E-value=0.091 Score=50.40 Aligned_cols=20 Identities=35% Similarity=0.434 Sum_probs=17.8
Q ss_pred EEEEcCCCCChHHHHHHHhC
Q 037346 389 VAVCGTVGSGKSSCLSCILG 408 (1156)
Q Consensus 389 ~~ivG~~GsGKSTll~~i~g 408 (1156)
++|+|+.|+|||||++.+.+
T Consensus 9 I~vvG~~~vGKSSli~~~~~ 28 (174)
T d1wmsa_ 9 VILLGDGGVGKSSLMNRYVT 28 (174)
T ss_dssp EEEECCTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHh
Confidence 88999999999999977654
|
| >d1xp8a1 c.37.1.11 (A:15-282) RecA protein, ATPase-domain {Deinococcus radiodurans [TaxId: 1299]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: RecA protein, ATPase-domain species: Deinococcus radiodurans [TaxId: 1299]
Probab=89.06 E-value=0.96 Score=46.28 Aligned_cols=118 Identities=19% Similarity=0.245 Sum_probs=67.0
Q ss_pred eeeCCCCCCHHHHHHHHhhcccCCCc-eEEEcCeeCCCCChHHHhhcCeeeccccccccccchhccCCCCCCCHHHHHHH
Q 037346 964 VLRGRTGSGKSTLIQTLFRIVESTAG-HILIDGKDISLIGLHDLRTRLSIIPQDPTMFEGTTRSNLDPLEEHADEQIWEA 1042 (1156)
Q Consensus 964 vL~G~SGsGKSTL~~lL~rl~~p~~G-~I~idG~di~~i~~~~LR~~i~~VpQdp~LF~gTIr~Nl~~~~~~~deei~~a 1042 (1156)
.+-|++|||||||...++.-..-..| -++||... .++++. .+++|+=+ +|+....+.+-|+..+.
T Consensus 61 ei~G~~~sGKT~l~l~~~~~aqk~g~~v~yiDtE~--~~~~~~-a~~~Gvd~-----------d~i~~~~~~~~E~~~~~ 126 (268)
T d1xp8a1 61 EIYGPESGGKTTLALAIVAQAQKAGGTCAFIDAEH--ALDPVY-ARALGVNT-----------DELLVSQPDNGEQALEI 126 (268)
T ss_dssp EEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSC--CCCHHH-HHHTTCCG-----------GGCEEECCSSHHHHHHH
T ss_pred EEecCCccchHHHHHHHHHHHHhCCCEEEEEECCc--cCCHHH-HHHhCCCc-----------hhEEEEcCCCHHHHHHH
Confidence 45699999999999988887664444 47777763 455554 44567632 34444455555665554
Q ss_pred HHHcCCChHHHhhcCCccccccccccCCCEEEEecCCcCC---C--HH--------HHHHHHHHHHHh-----cCCceEE
Q 037346 1043 LDKCQLGDEVRKKKGKLDSQGRVLLKKSKVLVLDEATASV---D--TA--------TDNQIQQTLRQH-----FSDCTVV 1104 (1156)
Q Consensus 1043 l~~~~l~~~i~~lp~gl~s~ARALLr~~~ILiLDEaTS~L---D--~~--------te~~I~~~l~~~-----~~~~TvI 1104 (1156)
++. .+.+ .+++++|+|=.++-. | .+ ..+.+.+.++.+ ..+.++|
T Consensus 127 ~~~-----l~~~-------------~~~~liIiDSi~al~~r~e~~~~~~~~~~~~~a~~l~~~lr~l~~~~~~~~~~vi 188 (268)
T d1xp8a1 127 MEL-----LVRS-------------GAIDVVVVDSVAALTPRAEIEGDMGDSLPGLQARLMSQALRKLTAILSKTGTAAI 188 (268)
T ss_dssp HHH-----HHTT-------------TCCSEEEEECTTTCCCSTTC--------CCHHHHHHHHHHHHHHHHHTTTCCEEE
T ss_pred HHH-----HHhc-------------CCCcEEEEecccccccHHHHcccccchhHHHHHHHHHHHHHHHHhhhhhcCCeEE
Confidence 432 2221 146799999887744 1 11 222344444432 2366777
Q ss_pred EeecCcccc
Q 037346 1105 TIAHRITSV 1113 (1156)
Q Consensus 1105 ~IaHrl~ti 1113 (1156)
+|-|=-+.+
T Consensus 189 ~tNQv~~~~ 197 (268)
T d1xp8a1 189 FINQVREKI 197 (268)
T ss_dssp EEEEC----
T ss_pred EEeEEeecc
Confidence 777754443
|
| >d1j8yf2 c.37.1.10 (F:87-297) GTPase domain of the signal sequence recognition protein Ffh {Archaeon Acidianus ambivalens [TaxId: 2283]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal sequence recognition protein Ffh species: Archaeon Acidianus ambivalens [TaxId: 2283]
Probab=89.02 E-value=0.093 Score=52.15 Aligned_cols=41 Identities=15% Similarity=0.092 Sum_probs=24.2
Q ss_pred eCCeEEEEEcCCCCChHHHHHHHhCCCCCCCcEEEEcCeEEEEecCC
Q 037346 384 FHGMRVAVCGTVGSGKSSCLSCILGGVPKESGIIRLCGTKAYVAQSP 430 (1156)
Q Consensus 384 ~~g~~~~ivG~~GsGKSTll~~i~g~~~~~~G~i~~~g~~~~v~Q~~ 430 (1156)
+...++++|||+|+||||.+-=|+-.+. ..| .+++++.=+.
T Consensus 10 k~p~vi~lvGptGvGKTTTiAKLA~~~~-~~g-----~kV~lit~Dt 50 (211)
T d1j8yf2 10 KIPYVIMLVGVQGTGKATTAGKLAYFYK-KKG-----FKVGLVGADV 50 (211)
T ss_dssp SSSEEEEEECSCCC----HHHHHHHHHH-HTT-----CCEEEEECCC
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHH-HCC-----CceEEEEeec
Confidence 3456899999999999999876665543 233 2566665443
|
| >d1teva_ c.37.1.1 (A:) UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: UMP/CMP kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=88.97 E-value=0.079 Score=51.83 Aligned_cols=68 Identities=15% Similarity=0.121 Sum_probs=37.5
Q ss_pred ceeeCCCCCCHHHHHHHHhhcccCCCceEEEcCeeCCCCChHHHhhcCeeeccccccccccchhccCCCCCCCHHHHHHH
Q 037346 963 LVLRGRTGSGKSTLIQTLFRIVESTAGHILIDGKDISLIGLHDLRTRLSIIPQDPTMFEGTTRSNLDPLEEHADEQIWEA 1042 (1156)
Q Consensus 963 ~vL~G~SGsGKSTL~~lL~rl~~p~~G~I~idG~di~~i~~~~LR~~i~~VpQdp~LF~gTIr~Nl~~~~~~~deei~~a 1042 (1156)
++|.|+.||||||+++.|..-| |-..|+- -+-+|..+ -++...+.-.+.+.+.-+....|+.+...
T Consensus 4 I~i~GppGSGKsT~a~~La~~~----g~~~i~~-------g~llR~~~---~~~~~~~~~~~~~~~~~~~~v~d~~~~~~ 69 (194)
T d1teva_ 4 VFVLGGPGAGKGTQCARIVEKY----GYTHLSA-------GELLRDER---KNPDSQYGELIEKYIKEGKIVPVEITISL 69 (194)
T ss_dssp EEEECCTTSSHHHHHHHHHHHH----CCEEEEH-------HHHHHHHH---HCTTSTTHHHHHHHHHTTCCCCHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHh----CCceEcH-------HHHHHHHH---HhhhhhHHHHHHHHHhcCCccccchhhHH
Confidence 3567999999999999998765 3344431 12244321 12222233334444444455566665554
Q ss_pred HH
Q 037346 1043 LD 1044 (1156)
Q Consensus 1043 l~ 1044 (1156)
++
T Consensus 70 ~~ 71 (194)
T d1teva_ 70 LK 71 (194)
T ss_dssp HH
T ss_pred HH
Confidence 44
|
| >d1z0ja1 c.37.1.8 (A:2-168) Rab-22a {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-22a species: Mouse (Mus musculus) [TaxId: 10090]
Probab=88.92 E-value=0.088 Score=50.13 Aligned_cols=21 Identities=33% Similarity=0.501 Sum_probs=18.7
Q ss_pred EEEEEcCCCCChHHHHHHHhC
Q 037346 388 RVAVCGTVGSGKSSCLSCILG 408 (1156)
Q Consensus 388 ~~~ivG~~GsGKSTll~~i~g 408 (1156)
.++|+|..|+|||||++-+.+
T Consensus 6 Ki~lvG~~~vGKTsli~rl~~ 26 (167)
T d1z0ja1 6 KVCLLGDTGVGKSSIMWRFVE 26 (167)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 478999999999999988764
|
| >d2qm8a1 c.37.1.10 (A:5-327) Metallochaperone MeaB {Methylobacterium extorquens [TaxId: 408]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Metallochaperone MeaB species: Methylobacterium extorquens [TaxId: 408]
Probab=88.88 E-value=0.092 Score=55.97 Aligned_cols=25 Identities=28% Similarity=0.502 Sum_probs=21.4
Q ss_pred CeEEEEEcCCCCChHHHHHHHhCCC
Q 037346 386 GMRVAVCGTVGSGKSSCLSCILGGV 410 (1156)
Q Consensus 386 g~~~~ivG~~GsGKSTll~~i~g~~ 410 (1156)
.-.++|+||.|+|||||+..+...+
T Consensus 51 ~~~igitG~pGaGKSTli~~l~~~~ 75 (323)
T d2qm8a1 51 AIRVGITGVPGVGKSTTIDALGSLL 75 (323)
T ss_dssp SEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred ceEEeeeCCCCCCHHHHHHHHHHHH
Confidence 3479999999999999999987543
|
| >d1moza_ c.37.1.8 (A:) ADP-ribosylation factor {Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]
Probab=88.83 E-value=0.071 Score=51.62 Aligned_cols=21 Identities=29% Similarity=0.423 Sum_probs=18.9
Q ss_pred EEEEEcCCCCChHHHHHHHhC
Q 037346 388 RVAVCGTVGSGKSSCLSCILG 408 (1156)
Q Consensus 388 ~~~ivG~~GsGKSTll~~i~g 408 (1156)
.++++|++|+|||||++.+.+
T Consensus 19 KI~lvG~~~vGKTsLi~~l~~ 39 (182)
T d1moza_ 19 RILILGLDGAGKTTILYRLQI 39 (182)
T ss_dssp EEEEEEETTSSHHHHHHHTCC
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 588999999999999998854
|
| >d1kmqa_ c.37.1.8 (A:) RhoA {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: RhoA species: Human (Homo sapiens) [TaxId: 9606]
Probab=88.79 E-value=0.11 Score=49.85 Aligned_cols=22 Identities=18% Similarity=0.271 Sum_probs=19.1
Q ss_pred EEEEEcCCCCChHHHHHHHhCC
Q 037346 388 RVAVCGTVGSGKSSCLSCILGG 409 (1156)
Q Consensus 388 ~~~ivG~~GsGKSTll~~i~g~ 409 (1156)
.++|+|++|+|||||++.+.+.
T Consensus 4 KivvvG~~~vGKTsLi~~~~~~ 25 (177)
T d1kmqa_ 4 KLVIVGDGACGKTCLLIVNSKD 25 (177)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCcCHHHHHHHHHhC
Confidence 5789999999999999887753
|
| >d1ixza_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: AAA domain of cell division protein FtsH species: Thermus thermophilus [TaxId: 274]
Probab=88.69 E-value=0.075 Score=54.45 Aligned_cols=24 Identities=25% Similarity=0.405 Sum_probs=21.5
Q ss_pred EEEEEcCCCCChHHHHHHHhCCCC
Q 037346 388 RVAVCGTVGSGKSSCLSCILGGVP 411 (1156)
Q Consensus 388 ~~~ivG~~GsGKSTll~~i~g~~~ 411 (1156)
-+.+.||.|||||+|.++|++++.
T Consensus 44 giLl~GppGtGKT~la~aia~~~~ 67 (247)
T d1ixza_ 44 GVLLVGPPGVGKTHLARAVAGEAR 67 (247)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHTT
T ss_pred eEEEecCCCCChhHHHHHHHHHcC
Confidence 378999999999999999998764
|
| >d1m7ba_ c.37.1.8 (A:) RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: RhoE (RND3) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=88.61 E-value=0.16 Score=49.01 Aligned_cols=21 Identities=24% Similarity=0.436 Sum_probs=17.9
Q ss_pred EEEEEcCCCCChHHHHHHHhC
Q 037346 388 RVAVCGTVGSGKSSCLSCILG 408 (1156)
Q Consensus 388 ~~~ivG~~GsGKSTll~~i~g 408 (1156)
.++++|..|+|||||++.++.
T Consensus 4 KivliG~~~vGKTsli~r~~~ 24 (179)
T d1m7ba_ 4 KIVVVGDSQCGKTALLHVFAK 24 (179)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 578999999999999976553
|
| >d1z08a1 c.37.1.8 (A:17-183) Rab21 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab21 species: Human (Homo sapiens) [TaxId: 9606]
Probab=88.61 E-value=0.13 Score=48.96 Aligned_cols=21 Identities=24% Similarity=0.211 Sum_probs=18.6
Q ss_pred EEEEEcCCCCChHHHHHHHhC
Q 037346 388 RVAVCGTVGSGKSSCLSCILG 408 (1156)
Q Consensus 388 ~~~ivG~~GsGKSTll~~i~g 408 (1156)
.++|+|..|+|||||++.+.+
T Consensus 5 KivlvG~~~vGKTsLi~r~~~ 25 (167)
T d1z08a1 5 KVVLLGEGCVGKTSLVLRYCE 25 (167)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 478999999999999998764
|
| >d1d2na_ c.37.1.20 (A:) Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein {Chinese hamster (Cricetulus griseus) [TaxId: 10029]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]
Probab=88.60 E-value=0.072 Score=54.58 Aligned_cols=25 Identities=24% Similarity=0.207 Sum_probs=21.6
Q ss_pred eEEEEEcCCCCChHHHHHHHhCCCC
Q 037346 387 MRVAVCGTVGSGKSSCLSCILGGVP 411 (1156)
Q Consensus 387 ~~~~ivG~~GsGKSTll~~i~g~~~ 411 (1156)
.-+.+.||.|||||++.++|+.+..
T Consensus 41 ~~vLL~GppGtGKT~la~alA~~~~ 65 (246)
T d1d2na_ 41 VSVLLEGPPHSGKTALAAKIAEESN 65 (246)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHHT
T ss_pred eEEEEECcCCCCHHHHHHHHhhccc
Confidence 3578999999999999999997643
|
| >d1x3sa1 c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab18 species: Human (Homo sapiens) [TaxId: 9606]
Probab=88.54 E-value=0.12 Score=49.64 Aligned_cols=21 Identities=33% Similarity=0.476 Sum_probs=19.0
Q ss_pred EEEEEcCCCCChHHHHHHHhC
Q 037346 388 RVAVCGTVGSGKSSCLSCILG 408 (1156)
Q Consensus 388 ~~~ivG~~GsGKSTll~~i~g 408 (1156)
.++++|..|+|||||++.+.+
T Consensus 9 Ki~vvG~~~vGKTsli~~l~~ 29 (177)
T d1x3sa1 9 KILIIGESGVGKSSLLLRFTD 29 (177)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 488999999999999998875
|
| >d1mh1a_ c.37.1.8 (A:) Rac {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rac species: Human (Homo sapiens) [TaxId: 9606]
Probab=88.54 E-value=0.096 Score=50.73 Aligned_cols=21 Identities=24% Similarity=0.289 Sum_probs=18.8
Q ss_pred EEEEEcCCCCChHHHHHHHhC
Q 037346 388 RVAVCGTVGSGKSSCLSCILG 408 (1156)
Q Consensus 388 ~~~ivG~~GsGKSTll~~i~g 408 (1156)
.++|+|..|+|||||++.+.+
T Consensus 7 KivviG~~~vGKTsli~~~~~ 27 (183)
T d1mh1a_ 7 KCVVVGDGAVGKTCLLISYTT 27 (183)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 589999999999999987764
|
| >d1in4a2 c.37.1.20 (A:17-254) Holliday junction helicase RuvB {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Holliday junction helicase RuvB species: Thermotoga maritima [TaxId: 2336]
Probab=88.50 E-value=0.093 Score=53.18 Aligned_cols=26 Identities=27% Similarity=0.478 Sum_probs=22.4
Q ss_pred ceeeCCCCCCHHHHHHHHhhcccCCC
Q 037346 963 LVLRGRTGSGKSTLIQTLFRIVESTA 988 (1156)
Q Consensus 963 ~vL~G~SGsGKSTL~~lL~rl~~p~~ 988 (1156)
..|.||+|+||||++++|..-+....
T Consensus 38 ~L~~GPpGtGKT~lA~~la~~~~~~~ 63 (238)
T d1in4a2 38 VLLAGPPGLGKTTLAHIIASELQTNI 63 (238)
T ss_dssp EEEESSTTSSHHHHHHHHHHHHTCCE
T ss_pred EEEECCCCCcHHHHHHHHHhccCCCc
Confidence 57889999999999999998876543
|
| >d2fn4a1 c.37.1.8 (A:24-196) r-Ras {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: r-Ras species: Human (Homo sapiens) [TaxId: 9606]
Probab=88.42 E-value=0.096 Score=50.24 Aligned_cols=21 Identities=29% Similarity=0.393 Sum_probs=18.7
Q ss_pred EEEEEcCCCCChHHHHHHHhC
Q 037346 388 RVAVCGTVGSGKSSCLSCILG 408 (1156)
Q Consensus 388 ~~~ivG~~GsGKSTll~~i~g 408 (1156)
.++|+|..|+|||||++.+.+
T Consensus 8 Kv~lvG~~~vGKTsLi~r~~~ 28 (173)
T d2fn4a1 8 KLVVVGGGGVGKSALTIQFIQ 28 (173)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 588999999999999987764
|
| >d1ek0a_ c.37.1.8 (A:) Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ypt51 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=88.41 E-value=0.13 Score=49.08 Aligned_cols=21 Identities=24% Similarity=0.395 Sum_probs=18.5
Q ss_pred EEEEEcCCCCChHHHHHHHhC
Q 037346 388 RVAVCGTVGSGKSSCLSCILG 408 (1156)
Q Consensus 388 ~~~ivG~~GsGKSTll~~i~g 408 (1156)
.++++|..|+|||||++.+.+
T Consensus 5 Ki~vvG~~~vGKTsLi~~~~~ 25 (170)
T d1ek0a_ 5 KLVLLGEAAVGKSSIVLRFVS 25 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 578999999999999997664
|
| >d2bmea1 c.37.1.8 (A:6-179) Rab4a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab4a species: Human (Homo sapiens) [TaxId: 9606]
Probab=88.37 E-value=0.098 Score=50.14 Aligned_cols=20 Identities=35% Similarity=0.526 Sum_probs=18.3
Q ss_pred EEEEcCCCCChHHHHHHHhC
Q 037346 389 VAVCGTVGSGKSSCLSCILG 408 (1156)
Q Consensus 389 ~~ivG~~GsGKSTll~~i~g 408 (1156)
++++|..|+|||||++.+.+
T Consensus 8 I~lvG~~~vGKTsll~~~~~ 27 (174)
T d2bmea1 8 FLVIGNAGTGKSCLLHQFIE 27 (174)
T ss_dssp EEEEESTTSSHHHHHHHHHH
T ss_pred EEEECCCCcCHHHHHHHHHh
Confidence 89999999999999998763
|
| >d1e0sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF6 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARF6 [TaxId: 9606]
Probab=88.31 E-value=0.082 Score=50.69 Aligned_cols=24 Identities=25% Similarity=0.328 Sum_probs=20.7
Q ss_pred EEEEEcCCCCChHHHHHHHhCCCC
Q 037346 388 RVAVCGTVGSGKSSCLSCILGGVP 411 (1156)
Q Consensus 388 ~~~ivG~~GsGKSTll~~i~g~~~ 411 (1156)
.++++|+.|+|||||++.+.+...
T Consensus 14 kIvlvG~~~vGKTSli~rl~~~~~ 37 (173)
T d1e0sa_ 14 RILMLGLDAAGKTTILYKLKLGQS 37 (173)
T ss_dssp EEEEEEETTSSHHHHHHHTTCCCC
T ss_pred EEEEECCCCCCHHHHHHHHhcCCC
Confidence 588999999999999999976543
|
| >d2cdna1 c.37.1.1 (A:1-181) Adenylate kinase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=88.29 E-value=0.094 Score=50.66 Aligned_cols=22 Identities=32% Similarity=0.449 Sum_probs=19.5
Q ss_pred ceeeCCCCCCHHHHHHHHhhcc
Q 037346 963 LVLRGRTGSGKSTLIQTLFRIV 984 (1156)
Q Consensus 963 ~vL~G~SGsGKSTL~~lL~rl~ 984 (1156)
++|.|+.||||||+.+.|..-|
T Consensus 3 I~i~G~pGsGKsT~a~~La~~~ 24 (181)
T d2cdna1 3 VLLLGPPGAGKGTQAVKLAEKL 24 (181)
T ss_dssp EEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHH
Confidence 5678999999999999997766
|
| >d1i2ma_ c.37.1.8 (A:) Ran {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ran species: Human (Homo sapiens) [TaxId: 9606]
Probab=88.28 E-value=0.075 Score=50.89 Aligned_cols=21 Identities=24% Similarity=0.480 Sum_probs=18.1
Q ss_pred EEEEEcCCCCChHHHHHHHhC
Q 037346 388 RVAVCGTVGSGKSSCLSCILG 408 (1156)
Q Consensus 388 ~~~ivG~~GsGKSTll~~i~g 408 (1156)
.++++|+.|+|||||++.+.+
T Consensus 5 Ki~vvG~~~vGKTsli~~~~~ 25 (170)
T d1i2ma_ 5 KLVLVGDGGTGKTTFVKRHLT 25 (170)
T ss_dssp EEEEEECTTSSHHHHHHTTC-
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 489999999999999997754
|
| >d1r2qa_ c.37.1.8 (A:) Rab5a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab5a species: Human (Homo sapiens) [TaxId: 9606]
Probab=88.27 E-value=0.13 Score=49.00 Aligned_cols=21 Identities=24% Similarity=0.347 Sum_probs=18.8
Q ss_pred EEEEEcCCCCChHHHHHHHhC
Q 037346 388 RVAVCGTVGSGKSSCLSCILG 408 (1156)
Q Consensus 388 ~~~ivG~~GsGKSTll~~i~g 408 (1156)
.++++|..|+|||||++.+.+
T Consensus 8 Ki~vvG~~~vGKTsLi~~l~~ 28 (170)
T d1r2qa_ 8 KLVLLGESAVGKSSLVLRFVK 28 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 478999999999999998873
|
| >d1kkma_ c.91.1.2 (A:) HPr kinase HprK C-terminal domain {Lactobacillus casei [TaxId: 1582]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PEP carboxykinase-like superfamily: PEP carboxykinase-like family: HPr kinase HprK C-terminal domain domain: HPr kinase HprK C-terminal domain species: Lactobacillus casei [TaxId: 1582]
Probab=88.22 E-value=0.14 Score=49.23 Aligned_cols=24 Identities=29% Similarity=0.462 Sum_probs=21.0
Q ss_pred eCCeEEEEEcCCCCChHHHHHHHh
Q 037346 384 FHGMRVAVCGTVGSGKSSCLSCIL 407 (1156)
Q Consensus 384 ~~g~~~~ivG~~GsGKSTll~~i~ 407 (1156)
-.|.=+.|+|++|+||||+...+.
T Consensus 12 ~~g~gvl~~G~sG~GKStlal~l~ 35 (176)
T d1kkma_ 12 IYGLGVLITGDSGVGKSETALELV 35 (176)
T ss_dssp ETTEEEEEECCTTSCHHHHHHHHH
T ss_pred ECCEEEEEEeCCCCCHHHHHHHHH
Confidence 357789999999999999998766
|
| >d1ofha_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: HslU species: Haemophilus influenzae [TaxId: 727]
Probab=88.20 E-value=0.11 Score=55.10 Aligned_cols=31 Identities=26% Similarity=0.543 Sum_probs=23.8
Q ss_pred ceeeCCCCCCHHHHHHHHhhcccCCCceEEEcC
Q 037346 963 LVLRGRTGSGKSTLIQTLFRIVESTAGHILIDG 995 (1156)
Q Consensus 963 ~vL~G~SGsGKSTL~~lL~rl~~p~~G~I~idG 995 (1156)
+.|.||||+|||+|+++|++... .--+.+|+
T Consensus 52 iLl~GPpG~GKT~lAkalA~~~~--~~~~~i~~ 82 (309)
T d1ofha_ 52 ILMIGPTGVGKTEIARRLAKLAN--APFIKVEA 82 (309)
T ss_dssp EEEECCTTSSHHHHHHHHHHHHT--CCEEEEEG
T ss_pred EEEECCCCCCHHHHHHHHhhccc--cchhcccc
Confidence 57889999999999999999763 22344544
|
| >d1sxja2 c.37.1.20 (A:295-547) Replication factor C1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=88.19 E-value=0.093 Score=53.61 Aligned_cols=23 Identities=26% Similarity=0.352 Sum_probs=20.5
Q ss_pred ceeeCCCCCCHHHHHHHHhhccc
Q 037346 963 LVLRGRTGSGKSTLIQTLFRIVE 985 (1156)
Q Consensus 963 ~vL~G~SGsGKSTL~~lL~rl~~ 985 (1156)
+.|.||+|+||||++++|++-+.
T Consensus 55 lll~GPpG~GKTt~a~~la~~~~ 77 (253)
T d1sxja2 55 AMLYGPPGIGKTTAAHLVAQELG 77 (253)
T ss_dssp EEEECSTTSSHHHHHHHHHHHTT
T ss_pred EEEECCCCCCHHHHHHHHHHHHH
Confidence 57889999999999999998764
|
| >d2bcgy1 c.37.1.8 (Y:3-196) GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTPase Ytp1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=88.13 E-value=0.13 Score=50.30 Aligned_cols=20 Identities=30% Similarity=0.373 Sum_probs=18.4
Q ss_pred EEEEcCCCCChHHHHHHHhC
Q 037346 389 VAVCGTVGSGKSSCLSCILG 408 (1156)
Q Consensus 389 ~~ivG~~GsGKSTll~~i~g 408 (1156)
++|+|+.|+|||||++.+.+
T Consensus 9 ivvvG~~~vGKTsli~~l~~ 28 (194)
T d2bcgy1 9 LLLIGNSGVGKSCLLLRFSD 28 (194)
T ss_dssp EEEEESTTSSHHHHHHHHHH
T ss_pred EEEECCCCcCHHHHHHHHhh
Confidence 89999999999999998774
|
| >d1p5zb_ c.37.1.1 (B:) Deoxycytidine kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Deoxycytidine kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=88.01 E-value=0.072 Score=53.98 Aligned_cols=23 Identities=30% Similarity=0.598 Sum_probs=20.7
Q ss_pred ceeeCCCCCCHHHHHHHHhhccc
Q 037346 963 LVLRGRTGSGKSTLIQTLFRIVE 985 (1156)
Q Consensus 963 ~vL~G~SGsGKSTL~~lL~rl~~ 985 (1156)
+++.|+.||||||++++|...++
T Consensus 5 I~ieG~dGsGKST~~~~L~~~l~ 27 (241)
T d1p5zb_ 5 ISIEGNIAAGKSTFVNILKQLCE 27 (241)
T ss_dssp EEEECSTTSSHHHHHTTTGGGCT
T ss_pred EEEECCCCCCHHHHHHHHHHHHh
Confidence 57889999999999999998774
|
| >d1sxjd2 c.37.1.20 (D:26-262) Replication factor C2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C2 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=88.00 E-value=0.096 Score=52.85 Aligned_cols=22 Identities=27% Similarity=0.558 Sum_probs=19.7
Q ss_pred ceeeCCCCCCHHHHHHHHhhcc
Q 037346 963 LVLRGRTGSGKSTLIQTLFRIV 984 (1156)
Q Consensus 963 ~vL~G~SGsGKSTL~~lL~rl~ 984 (1156)
+.|.||+|+||||+++++++-+
T Consensus 36 lll~Gp~G~GKTtl~~~i~~~l 57 (237)
T d1sxjd2 36 MLFYGPPGTGKTSTILALTKEL 57 (237)
T ss_dssp EEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCChHHHHHHHHHHH
Confidence 5788999999999999999864
|
| >d2fu5c1 c.37.1.8 (C:3-175) Rab8a {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab8a species: Mouse (Mus musculus) [TaxId: 10090]
Probab=87.97 E-value=0.08 Score=50.80 Aligned_cols=21 Identities=24% Similarity=0.377 Sum_probs=9.1
Q ss_pred EEEEEcCCCCChHHHHHHHhC
Q 037346 388 RVAVCGTVGSGKSSCLSCILG 408 (1156)
Q Consensus 388 ~~~ivG~~GsGKSTll~~i~g 408 (1156)
.++++|..|+|||||++.+++
T Consensus 8 Ki~vvG~~~vGKTsLi~~l~~ 28 (173)
T d2fu5c1 8 KLLLIGDSGVGKTCVLFRFSE 28 (173)
T ss_dssp EEEEECCCCC-----------
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 389999999999999987764
|
| >d1xpua3 c.37.1.11 (A:129-417) Transcription termination factor Rho, ATPase domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Transcription termination factor Rho, ATPase domain species: Escherichia coli [TaxId: 562]
Probab=87.81 E-value=0.11 Score=53.92 Aligned_cols=30 Identities=20% Similarity=0.220 Sum_probs=27.2
Q ss_pred EEeeCCeEEEEEcCCCCChHHHHHHHhCCC
Q 037346 381 LKVFHGMRVAVCGTVGSGKSSCLSCILGGV 410 (1156)
Q Consensus 381 l~i~~g~~~~ivG~~GsGKSTll~~i~g~~ 410 (1156)
+.|-+|+..+|+|+.|+|||||+..|....
T Consensus 38 ~PigrGQr~~I~g~~g~GKT~l~~~i~~~~ 67 (289)
T d1xpua3 38 SPIGRGQRGLIVAPPKAGKTMLLQNIAQSI 67 (289)
T ss_dssp SCCBTTCEEEEEECSSSSHHHHHHHHHHHH
T ss_pred ccccCCCeeeEeCCCCCCHHHHHHHHHHHH
Confidence 578999999999999999999999888644
|
| >d1jwyb_ c.37.1.8 (B:) Dynamin G domain {Dictyostelium discoideum [TaxId: 44689]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Dynamin G domain species: Dictyostelium discoideum [TaxId: 44689]
Probab=87.76 E-value=0.11 Score=54.91 Aligned_cols=23 Identities=43% Similarity=0.615 Sum_probs=21.2
Q ss_pred EEEEEcCCCCChHHHHHHHhCCC
Q 037346 388 RVAVCGTVGSGKSSCLSCILGGV 410 (1156)
Q Consensus 388 ~~~ivG~~GsGKSTll~~i~g~~ 410 (1156)
.++|||.-.||||||+++|+|.-
T Consensus 26 ~ivVvG~~ssGKSSliNaLlG~~ 48 (306)
T d1jwyb_ 26 QIVVVGSQSSGKSSVLENIVGRD 48 (306)
T ss_dssp EEEEEECSSSSHHHHHHHHHTSC
T ss_pred eEEEEeCCCCCHHHHHHHHhCCC
Confidence 47899999999999999999975
|
| >d1e4va1 c.37.1.1 (A:1-121,A:157-214) Adenylate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Escherichia coli [TaxId: 562]
Probab=87.69 E-value=0.097 Score=50.45 Aligned_cols=23 Identities=26% Similarity=0.338 Sum_probs=19.8
Q ss_pred ceeeCCCCCCHHHHHHHHhhccc
Q 037346 963 LVLRGRTGSGKSTLIQTLFRIVE 985 (1156)
Q Consensus 963 ~vL~G~SGsGKSTL~~lL~rl~~ 985 (1156)
+++.|+.||||||+.+.|.--|.
T Consensus 3 I~i~G~pGSGKsT~~~~La~~~~ 25 (179)
T d1e4va1 3 IILLGAPVAGKGTQAQFIMEKYG 25 (179)
T ss_dssp EEEEESTTSSHHHHHHHHHHHHC
T ss_pred EEEECCCCCCHHHHHHHHHHHhC
Confidence 56789999999999999987653
|
| >d2qn6a3 c.37.1.8 (A:2-206) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain species: Sulfolobus solfataricus [TaxId: 2287]
Probab=87.55 E-value=0.15 Score=50.51 Aligned_cols=24 Identities=29% Similarity=0.459 Sum_probs=21.7
Q ss_pred EEEEEcCCCCChHHHHHHHhCCCC
Q 037346 388 RVAVCGTVGSGKSSCLSCILGGVP 411 (1156)
Q Consensus 388 ~~~ivG~~GsGKSTll~~i~g~~~ 411 (1156)
-++|+|...+|||||++.|+|...
T Consensus 10 ni~iiGhVd~GKSTL~~~L~~~~~ 33 (205)
T d2qn6a3 10 NIGVVGHVDHGKTTLVQAITGIWT 33 (205)
T ss_dssp EEEEECSTTSSHHHHHHHHHSCCC
T ss_pred EEEEEEccCCcHHHHHHHHHhhhc
Confidence 479999999999999999998665
|
| >d2akab1 c.37.1.8 (B:6-304) Dynamin G domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Dynamin G domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=87.49 E-value=0.12 Score=54.41 Aligned_cols=23 Identities=39% Similarity=0.551 Sum_probs=21.1
Q ss_pred EEEEEcCCCCChHHHHHHHhCCC
Q 037346 388 RVAVCGTVGSGKSSCLSCILGGV 410 (1156)
Q Consensus 388 ~~~ivG~~GsGKSTll~~i~g~~ 410 (1156)
.++|||.-.||||||+++|+|.-
T Consensus 28 ~ivvvG~~SsGKSsliNaLlg~~ 50 (299)
T d2akab1 28 QIAVVGGQSAGKSSVLENFVGRD 50 (299)
T ss_dssp EEEEEEBTTSCHHHHHHHHHTSC
T ss_pred eEEEEcCCCCCHHHHHHHHhCCC
Confidence 48899999999999999999964
|
| >d1ixsb2 c.37.1.20 (B:4-242) Holliday junction helicase RuvB {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Holliday junction helicase RuvB species: Thermus thermophilus [TaxId: 274]
Probab=87.48 E-value=0.13 Score=51.99 Aligned_cols=23 Identities=35% Similarity=0.501 Sum_probs=20.4
Q ss_pred ceeeCCCCCCHHHHHHHHhhccc
Q 037346 963 LVLRGRTGSGKSTLIQTLFRIVE 985 (1156)
Q Consensus 963 ~vL~G~SGsGKSTL~~lL~rl~~ 985 (1156)
+.|.||+|+||||+++++.+-+.
T Consensus 38 ~Ll~GPpG~GKTtla~~la~~~~ 60 (239)
T d1ixsb2 38 LLLFGPPGLGKTTLAHVIAHELG 60 (239)
T ss_dssp EEEECCTTSCHHHHHHHHHHHHT
T ss_pred EEEECCCCCCHHHHHHHHHHHhC
Confidence 46889999999999999998654
|
| >d1wb1a4 c.37.1.8 (A:1-179) Elongation factor SelB, N-terminal domain {Methanococcus maripaludis [TaxId: 39152]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor SelB, N-terminal domain species: Methanococcus maripaludis [TaxId: 39152]
Probab=87.39 E-value=0.11 Score=50.25 Aligned_cols=21 Identities=38% Similarity=0.485 Sum_probs=19.1
Q ss_pred ceeeCCCCCCHHHHHHHHhhc
Q 037346 963 LVLRGRTGSGKSTLIQTLFRI 983 (1156)
Q Consensus 963 ~vL~G~SGsGKSTL~~lL~rl 983 (1156)
+++.|++.||||||++.|.+.
T Consensus 8 IaiiG~~naGKSTL~n~L~~~ 28 (179)
T d1wb1a4 8 LGIFGHIDHGKTTLSKVLTEI 28 (179)
T ss_dssp EEEEECTTSSHHHHHHHHHTT
T ss_pred EEEEeCCCCcHHHHHHHHHHh
Confidence 578999999999999999874
|
| >d1u8za_ c.37.1.8 (A:) Ras-related protein RalA {Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ras-related protein RalA species: Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]
Probab=87.35 E-value=0.21 Score=47.51 Aligned_cols=20 Identities=30% Similarity=0.547 Sum_probs=17.5
Q ss_pred ceeeCCCCCCHHHHHHHHhh
Q 037346 963 LVLRGRTGSGKSTLIQTLFR 982 (1156)
Q Consensus 963 ~vL~G~SGsGKSTL~~lL~r 982 (1156)
+++.|.+|+|||||++.+..
T Consensus 7 ivlvG~~~vGKTsli~~~~~ 26 (168)
T d1u8za_ 7 VIMVGSGGVGKSALTLQFMY 26 (168)
T ss_dssp EEEECSTTSSHHHHHHHHHH
T ss_pred EEEECCCCcCHHHHHHHHHh
Confidence 57889999999999998753
|
| >d1u94a1 c.37.1.11 (A:6-268) RecA protein, ATPase-domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: RecA protein, ATPase-domain species: Escherichia coli [TaxId: 562]
Probab=87.34 E-value=0.16 Score=52.33 Aligned_cols=31 Identities=19% Similarity=0.287 Sum_probs=26.8
Q ss_pred EeeCCeEEEEEcCCCCChHHHHHHHhCCCCC
Q 037346 382 KVFHGMRVAVCGTVGSGKSSCLSCILGGVPK 412 (1156)
Q Consensus 382 ~i~~g~~~~ivG~~GsGKSTll~~i~g~~~~ 412 (1156)
=+++|.++-|.||+|||||||+..++.....
T Consensus 50 Gi~~g~itei~G~~gsGKTtl~l~~~~~~q~ 80 (263)
T d1u94a1 50 GLPMGRIVEIYGPESSGKTTLTLQVIAAAQR 80 (263)
T ss_dssp SEETTSEEEEECSTTSSHHHHHHHHHHHHHH
T ss_pred CccCceEEEEecCCCcHHHHHHHHHHHHHHc
Confidence 4789999999999999999999877766543
|
| >d3adka_ c.37.1.1 (A:) Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Pig (Sus scrofa) [TaxId: 9823]
Probab=87.28 E-value=0.1 Score=51.04 Aligned_cols=68 Identities=16% Similarity=0.186 Sum_probs=38.8
Q ss_pred ceeeCCCCCCHHHHHHHHhhcccCCCceEEEcCeeCCCCChHHHhhcCeeeccccccccccchhccCCCCCCCHHHHHHH
Q 037346 963 LVLRGRTGSGKSTLIQTLFRIVESTAGHILIDGKDISLIGLHDLRTRLSIIPQDPTMFEGTTRSNLDPLEEHADEQIWEA 1042 (1156)
Q Consensus 963 ~vL~G~SGsGKSTL~~lL~rl~~p~~G~I~idG~di~~i~~~~LR~~i~~VpQdp~LF~gTIr~Nl~~~~~~~deei~~a 1042 (1156)
++|.||.||||||+.+.|..-| |-..|+-- +-+|+.+ ...+ .....+.+.+.-+...+++-+...
T Consensus 11 I~l~G~pGSGKsT~a~~La~~~----g~~~is~g-------~llr~~~---~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 75 (194)
T d3adka_ 11 IFVVGGPGSGKGTQCEKIVQKY----GYTHLSTG-------DLLRAEV---SSGS-ARGKMLSEIMEKGQLVPLETVLDM 75 (194)
T ss_dssp EEEEECTTSSHHHHHHHHHHHT----CCEEEEHH-------HHHHHHH---HHTC-HHHHHHHHHHTTTCCCCHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHh----CCeeEecc-------HHHHHHH---HHhH-hhhhhhHHHHhhccCCchheeeee
Confidence 4567999999999999998865 44445421 2234322 1111 112244455555556667666555
Q ss_pred HHH
Q 037346 1043 LDK 1045 (1156)
Q Consensus 1043 l~~ 1045 (1156)
++.
T Consensus 76 ~~~ 78 (194)
T d3adka_ 76 LRD 78 (194)
T ss_dssp HHH
T ss_pred hhh
Confidence 543
|
| >d1xtqa1 c.37.1.8 (A:3-169) GTP-binding protein RheB {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein RheB species: Human (Homo sapiens) [TaxId: 9606]
Probab=87.23 E-value=0.2 Score=47.47 Aligned_cols=21 Identities=24% Similarity=0.388 Sum_probs=18.2
Q ss_pred CceeeCCCCCCHHHHHHHHhh
Q 037346 962 PLVLRGRTGSGKSTLIQTLFR 982 (1156)
Q Consensus 962 ~~vL~G~SGsGKSTL~~lL~r 982 (1156)
++++.|.+|+|||||++.+..
T Consensus 6 Kv~liG~~~vGKTsLl~~~~~ 26 (167)
T d1xtqa1 6 KIAILGYRSVGKSSLTIQFVE 26 (167)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 368889999999999998764
|
| >d2g6ba1 c.37.1.8 (A:58-227) Rab26 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab26 species: Human (Homo sapiens) [TaxId: 9606]
Probab=87.14 E-value=0.13 Score=48.95 Aligned_cols=21 Identities=29% Similarity=0.447 Sum_probs=18.2
Q ss_pred EEEEEcCCCCChHHHHHHHhC
Q 037346 388 RVAVCGTVGSGKSSCLSCILG 408 (1156)
Q Consensus 388 ~~~ivG~~GsGKSTll~~i~g 408 (1156)
.++|+|+.|+|||||++.+.+
T Consensus 8 Ki~vvG~~~vGKTsli~~~~~ 28 (170)
T d2g6ba1 8 KVMLVGDSGVGKTCLLVRFKD 28 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 489999999999999996643
|
| >d1c1ya_ c.37.1.8 (A:) Rap1A {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rap1A species: Human (Homo sapiens) [TaxId: 9606]
Probab=87.04 E-value=0.14 Score=48.72 Aligned_cols=21 Identities=29% Similarity=0.408 Sum_probs=18.5
Q ss_pred EEEEEcCCCCChHHHHHHHhC
Q 037346 388 RVAVCGTVGSGKSSCLSCILG 408 (1156)
Q Consensus 388 ~~~ivG~~GsGKSTll~~i~g 408 (1156)
.++++|..|+|||||++-+.+
T Consensus 5 KivvvG~~~vGKTsli~r~~~ 25 (167)
T d1c1ya_ 5 KLVVLGSGGVGKSALTVQFVQ 25 (167)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHc
Confidence 478999999999999997764
|
| >d1uf9a_ c.37.1.1 (A:) Dephospho-CoA kinase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Dephospho-CoA kinase species: Thermus thermophilus [TaxId: 274]
Probab=87.01 E-value=0.11 Score=50.65 Aligned_cols=20 Identities=40% Similarity=0.454 Sum_probs=17.2
Q ss_pred eeeCCCCCCHHHHHHHHhhc
Q 037346 964 VLRGRTGSGKSTLIQTLFRI 983 (1156)
Q Consensus 964 vL~G~SGsGKSTL~~lL~rl 983 (1156)
+|.|.+||||||+++.|..+
T Consensus 7 gitG~~gSGKstva~~l~~~ 26 (191)
T d1uf9a_ 7 GITGNIGSGKSTVAALLRSW 26 (191)
T ss_dssp EEEECTTSCHHHHHHHHHHT
T ss_pred EEECCCCCCHHHHHHHHHHC
Confidence 56799999999999998643
|
| >d2p67a1 c.37.1.10 (A:1-327) LAO/AO transport system kinase ArgK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: LAO/AO transport system kinase ArgK species: Escherichia coli [TaxId: 562]
Probab=87.00 E-value=0.11 Score=55.48 Aligned_cols=86 Identities=16% Similarity=0.214 Sum_probs=41.9
Q ss_pred ceeeCCCCCCHHHHHHHHhhcccCCCceEEEcCeeCCC-CChHH-H--hhcCeeeccccccccccc--hhccCCCCCCCH
Q 037346 963 LVLRGRTGSGKSTLIQTLFRIVESTAGHILIDGKDISL-IGLHD-L--RTRLSIIPQDPTMFEGTT--RSNLDPLEEHAD 1036 (1156)
Q Consensus 963 ~vL~G~SGsGKSTL~~lL~rl~~p~~G~I~idG~di~~-i~~~~-L--R~~i~~VpQdp~LF~gTI--r~Nl~~~~~~~d 1036 (1156)
+.+.|+.|||||||+..|.+.+....-+|-+=-+|.++ .+-.. | |-++.-.+.++..|-.+. |.++... ....
T Consensus 57 IgitG~pGaGKSTLi~~l~~~~~~~g~~vavlavDpss~~~ggailgdr~rm~~~~~~~~~~ir~~~~~g~lgg~-~~~~ 135 (327)
T d2p67a1 57 LGVTGTPGAGKSTFLEAFGMLLIREGLKVAVIAVDPSSPVTGGSILGDKTRMNDLARAEAAFIRPVPSSGHLGGA-SQRA 135 (327)
T ss_dssp EEEEECTTSCHHHHHHHHHHHHHHTTCCEEEEEECCC---------------CTTTTCTTEEEEEECC-----CH-HHHH
T ss_pred EEeeCCCCCCHHHHHHHHHHHHHhcCCceeeecCCCceeeeccccccchhHHHHhcccccccccccccccccccc-hhhh
Confidence 57889999999999999988776443344333333221 11100 1 222333345555553221 1121100 0113
Q ss_pred HHHHHHHHHcCCC
Q 037346 1037 EQIWEALDKCQLG 1049 (1156)
Q Consensus 1037 eei~~al~~~~l~ 1049 (1156)
.+...+|+.+|.+
T Consensus 136 ~~~~~~~~~~g~d 148 (327)
T d2p67a1 136 RELMLLCEAAGYD 148 (327)
T ss_dssp HHHHHHHHHTTCS
T ss_pred hHHHHHHHhcCCC
Confidence 4677788888764
|
| >d1azta2 c.37.1.8 (A:35-65,A:202-391) Transducin (alpha subunit) {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Transducin (alpha subunit) species: Cow (Bos taurus) [TaxId: 9913]
Probab=86.99 E-value=0.14 Score=51.39 Aligned_cols=28 Identities=32% Similarity=0.364 Sum_probs=23.3
Q ss_pred EEEEEcCCCCChHHHHHHH-hCCCCCCCc
Q 037346 388 RVAVCGTVGSGKSSCLSCI-LGGVPKESG 415 (1156)
Q Consensus 388 ~~~ivG~~GsGKSTll~~i-~g~~~~~~G 415 (1156)
.+.++|.+|+|||||++-+ .+...|+-|
T Consensus 8 KilllG~~~vGKTsll~~~~~~~~~pTiG 36 (221)
T d1azta2 8 RLLLLGAGESGKSTIVKQMRILHVVLTSG 36 (221)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHCCCCCS
T ss_pred EEEEECCCCCCHHHHHHHHhcCCcCCCCC
Confidence 6899999999999999865 566667777
|
| >d2c78a3 c.37.1.8 (A:9-212) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain species: Thermus thermophilus [TaxId: 274]
Probab=86.97 E-value=0.069 Score=53.02 Aligned_cols=21 Identities=29% Similarity=0.360 Sum_probs=18.4
Q ss_pred ceeeCCCCCCHHHHHHHHhhc
Q 037346 963 LVLRGRTGSGKSTLIQTLFRI 983 (1156)
Q Consensus 963 ~vL~G~SGsGKSTL~~lL~rl 983 (1156)
+++.|+.++|||||+..|+..
T Consensus 6 i~iiGhvd~GKSTL~~~Ll~~ 26 (204)
T d2c78a3 6 VGTIGHVDHGKTTLTAALTYV 26 (204)
T ss_dssp EEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEeCCCCcHHHHHHHHHHH
Confidence 578899999999999999754
|
| >d1e32a2 c.37.1.20 (A:201-458) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Membrane fusion ATPase VCP/p97 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=86.96 E-value=0.13 Score=53.09 Aligned_cols=23 Identities=17% Similarity=0.339 Sum_probs=21.0
Q ss_pred EEEEcCCCCChHHHHHHHhCCCC
Q 037346 389 VAVCGTVGSGKSSCLSCILGGVP 411 (1156)
Q Consensus 389 ~~ivG~~GsGKSTll~~i~g~~~ 411 (1156)
+.+.||+|||||+++++++++..
T Consensus 41 iLL~GppGtGKT~l~~ala~~~~ 63 (258)
T d1e32a2 41 ILLYGPPGTGKTLIARAVANETG 63 (258)
T ss_dssp EEEECCTTSSHHHHHHHHHHHTT
T ss_pred eEEecCCCCCchHHHHHHHHHhC
Confidence 78999999999999999998754
|
| >d1fnna2 c.37.1.20 (A:1-276) CDC6, N-domain {Archaeon Pyrobaculum aerophilum [TaxId: 13773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: CDC6, N-domain species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]
Probab=86.91 E-value=0.18 Score=51.56 Aligned_cols=27 Identities=26% Similarity=0.562 Sum_probs=22.8
Q ss_pred ceeeCCCCCCHHHHHHHHhhcccCCCc
Q 037346 963 LVLRGRTGSGKSTLIQTLFRIVESTAG 989 (1156)
Q Consensus 963 ~vL~G~SGsGKSTL~~lL~rl~~p~~G 989 (1156)
+.|.||+|+||||+++.|++.+....+
T Consensus 46 lll~GppGtGKT~l~~~l~~~l~~~~~ 72 (276)
T d1fnna2 46 ATLLGRPGTGKTVTLRKLWELYKDKTT 72 (276)
T ss_dssp EEEECCTTSSHHHHHHHHHHHHTTSCC
T ss_pred eEEECCCCCCHHHHHHHHHHHHhcccC
Confidence 578899999999999999998865444
|
| >d1deka_ c.37.1.1 (A:) Deoxynucleoside monophosphate kinase {Bacteriophage T4 [TaxId: 10665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Deoxynucleoside monophosphate kinase species: Bacteriophage T4 [TaxId: 10665]
Probab=86.85 E-value=0.15 Score=51.68 Aligned_cols=22 Identities=23% Similarity=0.338 Sum_probs=19.9
Q ss_pred eEEEEEcCCCCChHHHHHHHhC
Q 037346 387 MRVAVCGTVGSGKSSCLSCILG 408 (1156)
Q Consensus 387 ~~~~ivG~~GsGKSTll~~i~g 408 (1156)
.++||+|+-||||||..+.|..
T Consensus 2 ~iIgiTG~igSGKsTva~~l~e 23 (241)
T d1deka_ 2 KLIFLSGVKRSGKDTTADFIMS 23 (241)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999999964
|
| >d1ckea_ c.37.1.1 (A:) CMP kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: CMP kinase species: Escherichia coli [TaxId: 562]
Probab=86.83 E-value=0.13 Score=51.28 Aligned_cols=28 Identities=29% Similarity=0.513 Sum_probs=20.6
Q ss_pred eeeCCCCCCHHHHHHHHhhcc---cCCCceE
Q 037346 964 VLRGRTGSGKSTLIQTLFRIV---ESTAGHI 991 (1156)
Q Consensus 964 vL~G~SGsGKSTL~~lL~rl~---~p~~G~I 991 (1156)
++.||.||||||+.+.|..-| ..+.|.+
T Consensus 7 ~I~GppGSGKgT~ak~La~~~gl~~iStGdL 37 (225)
T d1ckea_ 7 TIDGPSGAGKGTLCKAMAEALQWHLLDSGAI 37 (225)
T ss_dssp EEECCTTSSHHHHHHHHHHHHTCEEEEHHHH
T ss_pred EEECCCCCCHHHHHHHHHHHhCCcEECHHHH
Confidence 455999999999999996544 3445543
|
| >d1akya1 c.37.1.1 (A:3-130,A:169-220) Adenylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=86.82 E-value=0.13 Score=49.56 Aligned_cols=23 Identities=35% Similarity=0.443 Sum_probs=20.2
Q ss_pred CceeeCCCCCCHHHHHHHHhhcc
Q 037346 962 PLVLRGRTGSGKSTLIQTLFRIV 984 (1156)
Q Consensus 962 ~~vL~G~SGsGKSTL~~lL~rl~ 984 (1156)
+++|.|+.||||||+.+.|.--|
T Consensus 4 rIvl~G~pGSGKtT~a~~La~~~ 26 (180)
T d1akya1 4 RMVLIGPPGAGKGTQAPNLQERF 26 (180)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 45778999999999999998766
|
| >d1kkma_ c.91.1.2 (A:) HPr kinase HprK C-terminal domain {Lactobacillus casei [TaxId: 1582]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PEP carboxykinase-like superfamily: PEP carboxykinase-like family: HPr kinase HprK C-terminal domain domain: HPr kinase HprK C-terminal domain species: Lactobacillus casei [TaxId: 1582]
Probab=86.80 E-value=0.13 Score=49.27 Aligned_cols=23 Identities=30% Similarity=0.524 Sum_probs=18.2
Q ss_pred CCCceeeCCCCCCHHHHHHHHhh
Q 037346 960 NLPLVLRGRTGSGKSTLIQTLFR 982 (1156)
Q Consensus 960 ~~~~vL~G~SGsGKSTL~~lL~r 982 (1156)
+.-+.+.|+||+||||++..|..
T Consensus 14 g~gvl~~G~sG~GKStlal~l~~ 36 (176)
T d1kkma_ 14 GLGVLITGDSGVGKSETALELVQ 36 (176)
T ss_dssp TEEEEEECCTTSCHHHHHHHHHH
T ss_pred CEEEEEEeCCCCCHHHHHHHHHH
Confidence 44467889999999999977653
|
| >d2bmja1 c.37.1.8 (A:66-240) Centaurin gamma 1, G domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Centaurin gamma 1, G domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=86.80 E-value=0.14 Score=49.19 Aligned_cols=22 Identities=45% Similarity=0.613 Sum_probs=19.3
Q ss_pred EEEEEcCCCCChHHHHHHHhCC
Q 037346 388 RVAVCGTVGSGKSSCLSCILGG 409 (1156)
Q Consensus 388 ~~~ivG~~GsGKSTll~~i~g~ 409 (1156)
.++++|+.|+|||||++.+.+.
T Consensus 7 ki~vlG~~~vGKTsLi~~~~~~ 28 (175)
T d2bmja1 7 RLGVLGDARSGKSSLIHRFLTG 28 (175)
T ss_dssp EEEEECCTTTTHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 5899999999999999977653
|
| >d1ksha_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL2 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Mouse (Mus musculus), ARL2 [TaxId: 10090]
Probab=86.79 E-value=0.13 Score=48.65 Aligned_cols=22 Identities=23% Similarity=0.419 Sum_probs=19.0
Q ss_pred CceeeCCCCCCHHHHHHHHhhc
Q 037346 962 PLVLRGRTGSGKSTLIQTLFRI 983 (1156)
Q Consensus 962 ~~vL~G~SGsGKSTL~~lL~rl 983 (1156)
++++.|+.|||||||++.|.+-
T Consensus 4 ki~ivG~~~~GKTsLi~~l~~~ 25 (165)
T d1ksha_ 4 RLLMLGLDNAGKTTILKKFNGE 25 (165)
T ss_dssp EEEEECSTTSSHHHHHHHHTTC
T ss_pred EEEEECCCCCCHHHHHHHHcCC
Confidence 3678899999999999998764
|
| >d1f5na2 c.37.1.8 (A:7-283) Interferon-induced guanylate-binding protein 1 (GBP1), N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Interferon-induced guanylate-binding protein 1 (GBP1), N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=86.71 E-value=0.15 Score=53.10 Aligned_cols=24 Identities=29% Similarity=0.391 Sum_probs=21.7
Q ss_pred eEEEEEcCCCCChHHHHHHHhCCC
Q 037346 387 MRVAVCGTVGSGKSSCLSCILGGV 410 (1156)
Q Consensus 387 ~~~~ivG~~GsGKSTll~~i~g~~ 410 (1156)
.+|+|+||-++||||||+.|.|..
T Consensus 33 ~vvsi~G~~~sGKS~llN~l~~~~ 56 (277)
T d1f5na2 33 VVVAIVGLYRTGKSYLMNKLAGKK 56 (277)
T ss_dssp EEEEEEEBTTSSHHHHHHHHTTCS
T ss_pred EEEEEECCCCCCHHHHHHHHcCCC
Confidence 489999999999999999999853
|
| >d1sxjb2 c.37.1.20 (B:7-230) Replication factor C4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C4 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=86.58 E-value=0.15 Score=51.13 Aligned_cols=23 Identities=22% Similarity=0.550 Sum_probs=20.1
Q ss_pred EEEEcCCCCChHHHHHHHhCCCC
Q 037346 389 VAVCGTVGSGKSSCLSCILGGVP 411 (1156)
Q Consensus 389 ~~ivG~~GsGKSTll~~i~g~~~ 411 (1156)
+.+.||+|+||||+.++++.++.
T Consensus 39 ~ll~Gp~G~GKTt~a~~la~~l~ 61 (224)
T d1sxjb2 39 MIISGMPGIGKTTSVHCLAHELL 61 (224)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHH
T ss_pred EEEECCCCCCchhhHHHHHHHHh
Confidence 67999999999999999987653
|
| >d1knxa2 c.91.1.2 (A:133-309) HPr kinase HprK C-terminal domain {Mycoplasma pneumoniae [TaxId: 2104]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PEP carboxykinase-like superfamily: PEP carboxykinase-like family: HPr kinase HprK C-terminal domain domain: HPr kinase HprK C-terminal domain species: Mycoplasma pneumoniae [TaxId: 2104]
Probab=86.20 E-value=0.14 Score=49.25 Aligned_cols=33 Identities=27% Similarity=0.423 Sum_probs=22.9
Q ss_pred EEEEEEEEEcCCCCceeeCCCCCCHHHHHHHHhh
Q 037346 949 NIRHLQVRYAPNLPLVLRGRTGSGKSTLIQTLFR 982 (1156)
Q Consensus 949 ~~~~Vsf~Y~~~~~~vL~G~SGsGKSTL~~lL~r 982 (1156)
.+....+... +.-+.+.|+||+||||++..|..
T Consensus 5 ~~H~~~v~~~-g~gvli~G~sG~GKS~lal~l~~ 37 (177)
T d1knxa2 5 QIHGVLLEVF-GVGVLLTGRSGIGKSECALDLIN 37 (177)
T ss_dssp EEEEEEEEET-TEEEEEEESSSSSHHHHHHHHHT
T ss_pred eEEEEEEEEC-CEEEEEEcCCCCCHHHHHHHHHH
Confidence 3444444443 44467889999999999977753
|
| >d2atxa1 c.37.1.8 (A:9-193) RhoQ {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: RhoQ species: Human (Homo sapiens) [TaxId: 9606]
Probab=86.19 E-value=0.17 Score=49.00 Aligned_cols=21 Identities=24% Similarity=0.321 Sum_probs=18.4
Q ss_pred EEEEEcCCCCChHHHHHHHhC
Q 037346 388 RVAVCGTVGSGKSSCLSCILG 408 (1156)
Q Consensus 388 ~~~ivG~~GsGKSTll~~i~g 408 (1156)
.++|+|..|+|||||++.+..
T Consensus 11 Ki~lvG~~~vGKTsLi~r~~~ 31 (185)
T d2atxa1 11 KCVVVGDGAVGKTCLLMSYAN 31 (185)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhh
Confidence 489999999999999987663
|
| >d1svma_ c.37.1.20 (A:) Papillomavirus large T antigen helicase domain {Simian virus 40 [TaxId: 10633]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Papillomavirus large T antigen helicase domain species: Simian virus 40 [TaxId: 10633]
Probab=86.18 E-value=0.11 Score=56.16 Aligned_cols=29 Identities=17% Similarity=0.147 Sum_probs=25.7
Q ss_pred eeCCeEEEEEcCCCCChHHHHHHHhCCCC
Q 037346 383 VFHGMRVAVCGTVGSGKSSCLSCILGGVP 411 (1156)
Q Consensus 383 i~~g~~~~ivG~~GsGKSTll~~i~g~~~ 411 (1156)
++++..+.+.||.|+||||+.++|++++.
T Consensus 151 ~~~~~~~~~~g~~~~gk~~~~~~~~~~~~ 179 (362)
T d1svma_ 151 IPKKRYWLFKGPIDSGKTTLAAALLELCG 179 (362)
T ss_dssp CTTCCEEEEECSTTSSHHHHHHHHHHHHC
T ss_pred CCCcCeEEEECCCCCCHHHHHHHHHHHcC
Confidence 36677999999999999999999998764
|
| >d2c78a3 c.37.1.8 (A:9-212) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain species: Thermus thermophilus [TaxId: 274]
Probab=86.06 E-value=0.17 Score=50.11 Aligned_cols=21 Identities=24% Similarity=0.347 Sum_probs=19.1
Q ss_pred EEEEEcCCCCChHHHHHHHhC
Q 037346 388 RVAVCGTVGSGKSSCLSCILG 408 (1156)
Q Consensus 388 ~~~ivG~~GsGKSTll~~i~g 408 (1156)
-++|+|..++|||||+..|++
T Consensus 5 ni~iiGhvd~GKSTL~~~Ll~ 25 (204)
T d2c78a3 5 NVGTIGHVDHGKTTLTAALTY 25 (204)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEEeCCCCcHHHHHHHHHH
Confidence 379999999999999999974
|
| >d1zj6a1 c.37.1.8 (A:2-178) ADP-ribosylation factor {Human (Homo sapiens), ARL5A [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARL5A [TaxId: 9606]
Probab=85.92 E-value=0.14 Score=48.83 Aligned_cols=21 Identities=19% Similarity=0.417 Sum_probs=18.6
Q ss_pred CceeeCCCCCCHHHHHHHHhh
Q 037346 962 PLVLRGRTGSGKSTLIQTLFR 982 (1156)
Q Consensus 962 ~~vL~G~SGsGKSTL~~lL~r 982 (1156)
.+++.|+.|||||||++.|.+
T Consensus 17 kI~vvG~~~~GKSsLi~rl~~ 37 (177)
T d1zj6a1 17 KVIIVGLDNAGKTTILYQFSM 37 (177)
T ss_dssp EEEEEESTTSSHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 367889999999999998876
|
| >d1odfa_ c.37.1.6 (A:) Hypothetical protein Ygr205W {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Hypothetical protein Ygr205W species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=85.90 E-value=0.14 Score=53.33 Aligned_cols=20 Identities=30% Similarity=0.454 Sum_probs=16.5
Q ss_pred eeeCCCCCCHHHHHHHHhhc
Q 037346 964 VLRGRTGSGKSTLIQTLFRI 983 (1156)
Q Consensus 964 vL~G~SGsGKSTL~~lL~rl 983 (1156)
+|.|++|||||||...|...
T Consensus 31 Gi~G~qGSGKSTl~~~l~~~ 50 (286)
T d1odfa_ 31 FFSGPQGSGKSFTSIQIYNH 50 (286)
T ss_dssp EEECCTTSSHHHHHHHHHHH
T ss_pred EeECCCCCCHHHHHHHHHHH
Confidence 56799999999999877544
|
| >d1jjva_ c.37.1.1 (A:) Dephospho-CoA kinase {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Dephospho-CoA kinase species: Haemophilus influenzae [TaxId: 727]
Probab=85.86 E-value=0.15 Score=50.50 Aligned_cols=19 Identities=37% Similarity=0.546 Sum_probs=16.7
Q ss_pred ceeeCCCCCCHHHHHHHHh
Q 037346 963 LVLRGRTGSGKSTLIQTLF 981 (1156)
Q Consensus 963 ~vL~G~SGsGKSTL~~lL~ 981 (1156)
++|.|..||||||+++.|.
T Consensus 5 IgITG~igSGKStv~~~l~ 23 (205)
T d1jjva_ 5 VGLTGGIGSGKTTIANLFT 23 (205)
T ss_dssp EEEECSTTSCHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHH
Confidence 4688999999999999884
|
| >d1ko7a2 c.91.1.2 (A:130-298) HPr kinase HprK C-terminal domain {Staphylococcus xylosus [TaxId: 1288]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PEP carboxykinase-like superfamily: PEP carboxykinase-like family: HPr kinase HprK C-terminal domain domain: HPr kinase HprK C-terminal domain species: Staphylococcus xylosus [TaxId: 1288]
Probab=85.73 E-value=0.29 Score=46.48 Aligned_cols=25 Identities=28% Similarity=0.380 Sum_probs=21.3
Q ss_pred eeCCeEEEEEcCCCCChHHHHHHHh
Q 037346 383 VFHGMRVAVCGTVGSGKSSCLSCIL 407 (1156)
Q Consensus 383 i~~g~~~~ivG~~GsGKSTll~~i~ 407 (1156)
--.|.=+.|.|++|+||||+...+.
T Consensus 12 ~~~g~gvli~G~sg~GKS~la~~l~ 36 (169)
T d1ko7a2 12 DVYGVGVLITGDSGIGKSETALELI 36 (169)
T ss_dssp EETTEEEEEEESTTSSHHHHHHHHH
T ss_pred EECCEEEEEEeCCCCCHHHHHHHHH
Confidence 3468889999999999999987665
|
| >d2atva1 c.37.1.8 (A:5-172) Ras-like estrogen-regulated growth inhibitor, RERG {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ras-like estrogen-regulated growth inhibitor, RERG species: Human (Homo sapiens) [TaxId: 9606]
Probab=85.58 E-value=0.26 Score=46.68 Aligned_cols=21 Identities=38% Similarity=0.673 Sum_probs=18.1
Q ss_pred CceeeCCCCCCHHHHHHHHhh
Q 037346 962 PLVLRGRTGSGKSTLIQTLFR 982 (1156)
Q Consensus 962 ~~vL~G~SGsGKSTL~~lL~r 982 (1156)
++++.|.+|+|||||++-+..
T Consensus 4 Ki~lvG~~~vGKTsli~r~~~ 24 (168)
T d2atva1 4 KLAIFGRAGVGKSALVVRFLT 24 (168)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 367889999999999998864
|
| >d1g41a_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: HslU species: Haemophilus influenzae [TaxId: 727]
Probab=85.50 E-value=0.14 Score=57.00 Aligned_cols=41 Identities=17% Similarity=0.265 Sum_probs=28.0
Q ss_pred EEEEEcCCCCChHHHHHHHhCCCCCCCcEEEEcC----eEEEEecCC
Q 037346 388 RVAVCGTVGSGKSSCLSCILGGVPKESGIIRLCG----TKAYVAQSP 430 (1156)
Q Consensus 388 ~~~ivG~~GsGKSTll~~i~g~~~~~~G~i~~~g----~~~~v~Q~~ 430 (1156)
-+.++||+|||||-|.+.|++++.. =-+.+++ ..|||..+.
T Consensus 51 NILliGPTGvGKTlLAr~LAk~l~V--PFv~~daT~fTeaGYvG~DV 95 (443)
T d1g41a_ 51 NILMIGPTGVGKTEIARRLAKLANA--PFIKVEATKFTEVGYVGKEV 95 (443)
T ss_dssp CEEEECCTTSSHHHHHHHHHHHTTC--CEEEEEGGGGC----CCCCT
T ss_pred cEEEECCCCCCHHHHHHHHHHHhCC--CEEEeecceeeecceeecch
Confidence 5789999999999999999998742 1344444 357776654
|
| >d2fh5b1 c.37.1.8 (B:63-269) Signal recognition particle receptor beta-subunit {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Signal recognition particle receptor beta-subunit species: Mouse (Mus musculus) [TaxId: 10090]
Probab=85.47 E-value=0.16 Score=50.04 Aligned_cols=20 Identities=30% Similarity=0.483 Sum_probs=18.3
Q ss_pred ceeeCCCCCCHHHHHHHHhh
Q 037346 963 LVLRGRTGSGKSTLIQTLFR 982 (1156)
Q Consensus 963 ~vL~G~SGsGKSTL~~lL~r 982 (1156)
++|.|+.|+|||||++.|.+
T Consensus 3 V~ivG~~~~GKTsLl~~l~~ 22 (207)
T d2fh5b1 3 VLFVGLCDSGKTLLFVRLLT 22 (207)
T ss_dssp EEEECSTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHc
Confidence 57889999999999999976
|
| >d2ngra_ c.37.1.8 (A:) CDC42 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: CDC42 species: Human (Homo sapiens) [TaxId: 9606]
Probab=85.46 E-value=0.17 Score=49.17 Aligned_cols=21 Identities=24% Similarity=0.289 Sum_probs=18.1
Q ss_pred EEEEEcCCCCChHHHHHHHhC
Q 037346 388 RVAVCGTVGSGKSSCLSCILG 408 (1156)
Q Consensus 388 ~~~ivG~~GsGKSTll~~i~g 408 (1156)
.++++|+.|+|||||++.+.+
T Consensus 5 KvvllG~~~vGKTSli~r~~~ 25 (191)
T d2ngra_ 5 KCVVVGDGAVGKTCLLISYTT 25 (191)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 489999999999999977653
|
| >d1sxjc2 c.37.1.20 (C:12-238) Replication factor C3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C3 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=85.41 E-value=0.18 Score=50.47 Aligned_cols=22 Identities=23% Similarity=0.477 Sum_probs=20.0
Q ss_pred EEEEcCCCCChHHHHHHHhCCC
Q 037346 389 VAVCGTVGSGKSSCLSCILGGV 410 (1156)
Q Consensus 389 ~~ivG~~GsGKSTll~~i~g~~ 410 (1156)
+.+.||.|+||||++++++.++
T Consensus 38 lLl~Gp~G~GKttl~~~la~~l 59 (227)
T d1sxjc2 38 LLFYGPPGTGKTSTIVALAREI 59 (227)
T ss_dssp EEEECSSSSSHHHHHHHHHHHH
T ss_pred EEEECCCCCChhHHHHHHHHHh
Confidence 6799999999999999999764
|
| >d3raba_ c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab3a species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=85.16 E-value=0.18 Score=48.02 Aligned_cols=20 Identities=15% Similarity=0.418 Sum_probs=17.8
Q ss_pred ceeeCCCCCCHHHHHHHHhh
Q 037346 963 LVLRGRTGSGKSTLIQTLFR 982 (1156)
Q Consensus 963 ~vL~G~SGsGKSTL~~lL~r 982 (1156)
+++.|.+|+|||||++.+.+
T Consensus 8 i~vvG~~~vGKTsLi~~l~~ 27 (169)
T d3raba_ 8 ILIIGNSSVGKTSFLFRYAD 27 (169)
T ss_dssp EEEECSTTSSHHHHHHHHHH
T ss_pred EEEECCCCcCHHHHHHHHHc
Confidence 67889999999999998764
|
| >d2ocpa1 c.37.1.1 (A:37-277) Deoxyguanosine kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Deoxyguanosine kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=85.16 E-value=0.2 Score=50.54 Aligned_cols=25 Identities=24% Similarity=0.462 Sum_probs=22.5
Q ss_pred eEEEEEcCCCCChHHHHHHHhCCCC
Q 037346 387 MRVAVCGTVGSGKSSCLSCILGGVP 411 (1156)
Q Consensus 387 ~~~~ivG~~GsGKSTll~~i~g~~~ 411 (1156)
++++|=|+-||||||+++.|.-.+.
T Consensus 3 k~IviEG~~GsGKST~~~~L~~~l~ 27 (241)
T d2ocpa1 3 RRLSIEGNIAVGKSTFVKLLTKTYP 27 (241)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHHCT
T ss_pred eEEEEECCCCCcHHHHHHHHHHHHh
Confidence 5899999999999999999987664
|
| >d2ak3a1 c.37.1.1 (A:0-124,A:162-225) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]
Probab=84.82 E-value=0.19 Score=49.03 Aligned_cols=23 Identities=26% Similarity=0.406 Sum_probs=20.2
Q ss_pred CceeeCCCCCCHHHHHHHHhhcc
Q 037346 962 PLVLRGRTGSGKSTLIQTLFRIV 984 (1156)
Q Consensus 962 ~~vL~G~SGsGKSTL~~lL~rl~ 984 (1156)
.++|.|+.||||||+.+.|.--|
T Consensus 8 rIiliG~PGSGKtT~a~~La~~~ 30 (189)
T d2ak3a1 8 RAAIMGAPGSGKGTVSSRITKHF 30 (189)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHB
T ss_pred eEEEECCCCCCHHHHHHHHHHHH
Confidence 35788999999999999998766
|
| >d1svsa1 c.37.1.8 (A:32-60,A:182-347) Transducin (alpha subunit) {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Transducin (alpha subunit) species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=84.69 E-value=0.17 Score=48.99 Aligned_cols=29 Identities=24% Similarity=0.239 Sum_probs=23.7
Q ss_pred EEEEEcCCCCChHHHHHHHhCCCCCCCcE
Q 037346 388 RVAVCGTVGSGKSSCLSCILGGVPKESGI 416 (1156)
Q Consensus 388 ~~~ivG~~GsGKSTll~~i~g~~~~~~G~ 416 (1156)
.++++|..|+|||||++-+.....|+.|.
T Consensus 4 KivllG~~~vGKTsl~~r~~~~~~~t~~~ 32 (195)
T d1svsa1 4 KLLLLGAGESGKSTIVKQMKIIHEAGTGI 32 (195)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHSCCCSE
T ss_pred EEEEECCCCCCHHHHHHHHhhCCCCCccE
Confidence 47899999999999999887655566664
|
| >d1ky3a_ c.37.1.8 (A:) Rab-related protein ypt7p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-related protein ypt7p species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=84.63 E-value=0.19 Score=47.86 Aligned_cols=20 Identities=25% Similarity=0.660 Sum_probs=17.7
Q ss_pred ceeeCCCCCCHHHHHHHHhh
Q 037346 963 LVLRGRTGSGKSTLIQTLFR 982 (1156)
Q Consensus 963 ~vL~G~SGsGKSTL~~lL~r 982 (1156)
+++.|++|+|||||++.+.+
T Consensus 5 i~~vG~~~vGKSsLi~~~~~ 24 (175)
T d1ky3a_ 5 VIILGDSGVGKTSLMHRYVN 24 (175)
T ss_dssp EEEECCTTSSHHHHHHHHHH
T ss_pred EEEECCCCcCHHHHHHHHHc
Confidence 57889999999999998864
|
| >d1ko7a2 c.91.1.2 (A:130-298) HPr kinase HprK C-terminal domain {Staphylococcus xylosus [TaxId: 1288]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PEP carboxykinase-like superfamily: PEP carboxykinase-like family: HPr kinase HprK C-terminal domain domain: HPr kinase HprK C-terminal domain species: Staphylococcus xylosus [TaxId: 1288]
Probab=84.58 E-value=0.18 Score=48.03 Aligned_cols=23 Identities=26% Similarity=0.511 Sum_probs=17.9
Q ss_pred CCCceeeCCCCCCHHHHHHHHhh
Q 037346 960 NLPLVLRGRTGSGKSTLIQTLFR 982 (1156)
Q Consensus 960 ~~~~vL~G~SGsGKSTL~~lL~r 982 (1156)
+.-+.+.|+||+||||++..|.+
T Consensus 15 g~gvli~G~sg~GKS~la~~l~~ 37 (169)
T d1ko7a2 15 GVGVLITGDSGIGKSETALELIK 37 (169)
T ss_dssp TEEEEEEESTTSSHHHHHHHHHH
T ss_pred CEEEEEEeCCCCCHHHHHHHHHH
Confidence 34467889999999999866643
|
| >d1zcba2 c.37.1.8 (A:47-75,A:202-372) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Transducin (alpha subunit) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=84.57 E-value=0.22 Score=48.40 Aligned_cols=28 Identities=29% Similarity=0.405 Sum_probs=22.2
Q ss_pred EEEEEcCCCCChHHHHHHHh--CCCCCCCc
Q 037346 388 RVAVCGTVGSGKSSCLSCIL--GGVPKESG 415 (1156)
Q Consensus 388 ~~~ivG~~GsGKSTll~~i~--g~~~~~~G 415 (1156)
.+.++|.+|+|||||++-+. -.+.|+-|
T Consensus 4 KivllG~~~vGKTsll~r~~f~~~~~pTiG 33 (200)
T d1zcba2 4 KILLLGAGESGKSTFLKQMRIIHGQDPTKG 33 (200)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHSCCCCSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCCeee
Confidence 57899999999999998772 23456767
|
| >d1d2na_ c.37.1.20 (A:) Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein {Chinese hamster (Cricetulus griseus) [TaxId: 10029]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]
Probab=84.41 E-value=0.19 Score=51.24 Aligned_cols=22 Identities=27% Similarity=0.407 Sum_probs=19.3
Q ss_pred ceeeCCCCCCHHHHHHHHhhcc
Q 037346 963 LVLRGRTGSGKSTLIQTLFRIV 984 (1156)
Q Consensus 963 ~vL~G~SGsGKSTL~~lL~rl~ 984 (1156)
+.|.||+|||||+++++|+.-.
T Consensus 43 vLL~GppGtGKT~la~alA~~~ 64 (246)
T d1d2na_ 43 VLLEGPPHSGKTALAAKIAEES 64 (246)
T ss_dssp EEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEECcCCCCHHHHHHHHhhcc
Confidence 4688999999999999998754
|
| >d1nija1 c.37.1.10 (A:2-223) Hypothetical protein YjiA, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Hypothetical protein YjiA, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=84.21 E-value=0.21 Score=50.05 Aligned_cols=22 Identities=32% Similarity=0.507 Sum_probs=20.2
Q ss_pred EEEEEcCCCCChHHHHHHHhCC
Q 037346 388 RVAVCGTVGSGKSSCLSCILGG 409 (1156)
Q Consensus 388 ~~~ivG~~GsGKSTll~~i~g~ 409 (1156)
++.|.|.-|||||||++-++..
T Consensus 5 v~iitGFLGaGKTTll~~lL~~ 26 (222)
T d1nija1 5 VTLLTGFLGAGKTTLLRHILNE 26 (222)
T ss_dssp EEEEEESSSSSCHHHHHHHHHS
T ss_pred EEEEeeCCCCCHHHHHHHHHhc
Confidence 6889999999999999999875
|
| >d1mo6a1 c.37.1.11 (A:1-269) RecA protein, ATPase-domain {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: RecA protein, ATPase-domain species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=83.99 E-value=0.18 Score=52.09 Aligned_cols=32 Identities=16% Similarity=0.242 Sum_probs=26.6
Q ss_pred EeeCCeEEEEEcCCCCChHHHHHHHhCCCCCC
Q 037346 382 KVFHGMRVAVCGTVGSGKSSCLSCILGGVPKE 413 (1156)
Q Consensus 382 ~i~~g~~~~ivG~~GsGKSTll~~i~g~~~~~ 413 (1156)
-++.|.++-+.||+|||||||+..++......
T Consensus 56 G~~~g~i~e~~G~~~~GKT~l~l~~~~~~q~~ 87 (269)
T d1mo6a1 56 GLPRGRVIEIYGPESSGKTTVALHAVANAQAA 87 (269)
T ss_dssp SBCSSSEEEEECSSSSSHHHHHHHHHHHHHHT
T ss_pred CcccceeEEEecCCCcHHHHHHHHHHHHHhcC
Confidence 58899999999999999999987776554433
|
| >d1z2aa1 c.37.1.8 (A:8-171) Rab23 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab23 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=83.88 E-value=0.22 Score=47.03 Aligned_cols=20 Identities=35% Similarity=0.601 Sum_probs=17.3
Q ss_pred ceeeCCCCCCHHHHHHHHhh
Q 037346 963 LVLRGRTGSGKSTLIQTLFR 982 (1156)
Q Consensus 963 ~vL~G~SGsGKSTL~~lL~r 982 (1156)
+++.|.+|+|||||++-+.+
T Consensus 5 v~liG~~~vGKSsLi~rl~~ 24 (164)
T d1z2aa1 5 MVVVGNGAVGKSSMIQRYCK 24 (164)
T ss_dssp EEEECSTTSSHHHHHHHHHH
T ss_pred EEEECCCCcCHHHHHHHHHh
Confidence 57889999999999987764
|
| >d2dy1a2 c.37.1.8 (A:8-274) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus, EF-G-2 [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor G (EF-G), N-terminal (G) domain species: Thermus thermophilus, EF-G-2 [TaxId: 274]
Probab=83.81 E-value=0.23 Score=51.14 Aligned_cols=21 Identities=38% Similarity=0.574 Sum_probs=18.9
Q ss_pred EEEEEcCCCCChHHHHHHHhC
Q 037346 388 RVAVCGTVGSGKSSCLSCILG 408 (1156)
Q Consensus 388 ~~~ivG~~GsGKSTll~~i~g 408 (1156)
-++|+|+.|||||||...|+.
T Consensus 4 Nv~iiGh~~~GKTtL~e~ll~ 24 (267)
T d2dy1a2 4 TVALVGHAGSGKTTLTEALLY 24 (267)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEEcCCCCcHHHHHHHHHH
Confidence 479999999999999999964
|
| >d1mo6a1 c.37.1.11 (A:1-269) RecA protein, ATPase-domain {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: RecA protein, ATPase-domain species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=83.73 E-value=0.42 Score=49.09 Aligned_cols=91 Identities=21% Similarity=0.262 Sum_probs=57.9
Q ss_pred CCCceeeCCCCCCHHHHHHHHhhcccCCCce-EEEcCeeCCCCChHHHhhcCeeeccccccccccchhccCCCCCCCHHH
Q 037346 960 NLPLVLRGRTGSGKSTLIQTLFRIVESTAGH-ILIDGKDISLIGLHDLRTRLSIIPQDPTMFEGTTRSNLDPLEEHADEQ 1038 (1156)
Q Consensus 960 ~~~~vL~G~SGsGKSTL~~lL~rl~~p~~G~-I~idG~di~~i~~~~LR~~i~~VpQdp~LF~gTIr~Nl~~~~~~~dee 1038 (1156)
+.-..+-|++|||||||+..+.....-..|. |+||... .++.+.+++ +|+=+ +|+....+.+-|+
T Consensus 60 g~i~e~~G~~~~GKT~l~l~~~~~~q~~g~~~vyIDtE~--~~~~e~a~~-~GvD~-----------d~il~~~~~~~E~ 125 (269)
T d1mo6a1 60 GRVIEIYGPESSGKTTVALHAVANAQAAGGVAAFIDAEH--ALDPDYAKK-LGVDT-----------DSLLVSQPDTGEQ 125 (269)
T ss_dssp SSEEEEECSSSSSHHHHHHHHHHHHHHTTCEEEEEESSC--CCCHHHHHH-HTCCG-----------GGCEEECCSSHHH
T ss_pred ceeEEEecCCCcHHHHHHHHHHHHHhcCCCEEEEEECCc--cCCHHHHHH-hCCCH-----------HHeEEecCCCHHH
Confidence 3334566999999999988887776656665 7778765 355665554 46421 3554455556677
Q ss_pred HHHHHHHcCCChHHHhhcCCccccccccccCCCEEEEecCCcCC
Q 037346 1039 IWEALDKCQLGDEVRKKKGKLDSQGRVLLKKSKVLVLDEATASV 1082 (1156)
Q Consensus 1039 i~~al~~~~l~~~i~~lp~gl~s~ARALLr~~~ILiLDEaTS~L 1082 (1156)
+.+.++.. +.+ .+++++|+|=.++-.
T Consensus 126 ~~~~~~~l-----~~~-------------~~~~liIiDSi~al~ 151 (269)
T d1mo6a1 126 ALEIADML-----IRS-------------GALDIVVIDSVAALV 151 (269)
T ss_dssp HHHHHHHH-----HHT-------------TCEEEEEEECSTTCC
T ss_pred HHHHHHHH-----Hhc-------------CCCCEEEEecccccc
Confidence 76665431 221 145688999887655
|
| >d1w5sa2 c.37.1.20 (A:7-293) CDC6-like protein APE0152, N-terminal domain {Aeropyrum pernix [TaxId: 56636]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: CDC6-like protein APE0152, N-terminal domain species: Aeropyrum pernix [TaxId: 56636]
Probab=83.64 E-value=0.17 Score=52.07 Aligned_cols=23 Identities=26% Similarity=0.312 Sum_probs=19.9
Q ss_pred EEEEEcCCCCChHHHHHHHhCCC
Q 037346 388 RVAVCGTVGSGKSSCLSCILGGV 410 (1156)
Q Consensus 388 ~~~ivG~~GsGKSTll~~i~g~~ 410 (1156)
.+.++||.|+||||+++.++..+
T Consensus 48 ~l~l~GppGtGKT~l~~~l~~~l 70 (287)
T d1w5sa2 48 IYGSIGRVGIGKTTLAKFTVKRV 70 (287)
T ss_dssp EEECTTCCSSSHHHHHHHHHHHH
T ss_pred EEEeECCCCCCHHHHHHHHHHHH
Confidence 45667999999999999999775
|
| >d1vg8a_ c.37.1.8 (A:) Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab7 species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=83.43 E-value=0.23 Score=47.82 Aligned_cols=20 Identities=25% Similarity=0.655 Sum_probs=17.4
Q ss_pred ceeeCCCCCCHHHHHHHHhh
Q 037346 963 LVLRGRTGSGKSTLIQTLFR 982 (1156)
Q Consensus 963 ~vL~G~SGsGKSTL~~lL~r 982 (1156)
+++.|.+|+|||||++.+.+
T Consensus 5 v~vvG~~~vGKSSLi~~l~~ 24 (184)
T d1vg8a_ 5 VIILGDSGVGKTSLMNQYVN 24 (184)
T ss_dssp EEEECCTTSSHHHHHHHHHH
T ss_pred EEEECCCCcCHHHHHHHHHh
Confidence 57889999999999998764
|
| >d1g8pa_ c.37.1.20 (A:) ATPase subunit of magnesium chelatase, BchI {Rhodobacter capsulatus [TaxId: 1061]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ATPase subunit of magnesium chelatase, BchI species: Rhodobacter capsulatus [TaxId: 1061]
Probab=83.41 E-value=0.15 Score=54.68 Aligned_cols=26 Identities=31% Similarity=0.480 Sum_probs=23.6
Q ss_pred eEEEEEcCCCCChHHHHHHHhCCCCC
Q 037346 387 MRVAVCGTVGSGKSSCLSCILGGVPK 412 (1156)
Q Consensus 387 ~~~~ivG~~GsGKSTll~~i~g~~~~ 412 (1156)
--+.++|+.|+|||||++.+.+.+|+
T Consensus 29 h~vLl~G~pG~GKT~lar~~~~iLp~ 54 (333)
T d1g8pa_ 29 GGVLVFGDRGTGKSTAVRALAALLPE 54 (333)
T ss_dssp CCEEEECCGGGCTTHHHHHHHHHSCC
T ss_pred CeEEEECCCCccHHHHHHHHHHhCCC
Confidence 35789999999999999999998876
|
| >d1zd9a1 c.37.1.8 (A:18-181) ADP-ribosylation factor {Human (Homo sapiens), ARL8A [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARL8A [TaxId: 9606]
Probab=83.26 E-value=0.24 Score=46.72 Aligned_cols=21 Identities=33% Similarity=0.445 Sum_probs=17.7
Q ss_pred CceeeCCCCCCHHHHHHHHhh
Q 037346 962 PLVLRGRTGSGKSTLIQTLFR 982 (1156)
Q Consensus 962 ~~vL~G~SGsGKSTL~~lL~r 982 (1156)
++++.|++|+|||||++.+.+
T Consensus 4 ki~i~G~~~~GKTsLl~~l~~ 24 (164)
T d1zd9a1 4 ELTLVGLQYSGKTTFVNVIAS 24 (164)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHc
Confidence 357889999999999998754
|
| >d1gsia_ c.37.1.1 (A:) Thymidylate kinase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=83.23 E-value=0.23 Score=48.78 Aligned_cols=23 Identities=30% Similarity=0.570 Sum_probs=19.7
Q ss_pred ceeeCCCCCCHHHHHHHHhhccc
Q 037346 963 LVLRGRTGSGKSTLIQTLFRIVE 985 (1156)
Q Consensus 963 ~vL~G~SGsGKSTL~~lL~rl~~ 985 (1156)
+++.|.-||||||+++.|...++
T Consensus 3 I~ieG~dGsGKST~~~~L~~~l~ 25 (208)
T d1gsia_ 3 IAIEGVDGAGKRTLVEKLSGAFR 25 (208)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHHH
Confidence 46779999999999999987654
|
| >d1xp8a1 c.37.1.11 (A:15-282) RecA protein, ATPase-domain {Deinococcus radiodurans [TaxId: 1299]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: RecA protein, ATPase-domain species: Deinococcus radiodurans [TaxId: 1299]
Probab=83.22 E-value=0.18 Score=51.94 Aligned_cols=42 Identities=21% Similarity=0.346 Sum_probs=32.5
Q ss_pred EeeCCeEEEEEcCCCCChHHHHHHHhCCCCCCCcEEEEcCeEEEEecC
Q 037346 382 KVFHGMRVAVCGTVGSGKSSCLSCILGGVPKESGIIRLCGTKAYVAQS 429 (1156)
Q Consensus 382 ~i~~g~~~~ivG~~GsGKSTll~~i~g~~~~~~G~i~~~g~~~~v~Q~ 429 (1156)
=++.|.++-|.||+|||||||...++....-.. |.+.|+.-|
T Consensus 53 Gip~g~itei~G~~~sGKT~l~l~~~~~aqk~g------~~v~yiDtE 94 (268)
T d1xp8a1 53 GIPRGRITEIYGPESGGKTTLALAIVAQAQKAG------GTCAFIDAE 94 (268)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHHHHTT------CCEEEEESS
T ss_pred CccCceEEEEecCCccchHHHHHHHHHHHHhCC------CEEEEEECC
Confidence 478999999999999999999988887655332 345666554
|
| >d2erya1 c.37.1.8 (A:10-180) r-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: r-Ras2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=83.19 E-value=0.36 Score=45.79 Aligned_cols=20 Identities=40% Similarity=0.599 Sum_probs=17.6
Q ss_pred ceeeCCCCCCHHHHHHHHhh
Q 037346 963 LVLRGRTGSGKSTLIQTLFR 982 (1156)
Q Consensus 963 ~vL~G~SGsGKSTL~~lL~r 982 (1156)
++|.|.+|+|||||++-+..
T Consensus 8 i~lvG~~~vGKTsLi~r~~~ 27 (171)
T d2erya1 8 LVVVGGGGVGKSALTIQFIQ 27 (171)
T ss_dssp EEEEECTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHh
Confidence 68899999999999997754
|
| >d1z08a1 c.37.1.8 (A:17-183) Rab21 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab21 species: Human (Homo sapiens) [TaxId: 9606]
Probab=83.10 E-value=0.27 Score=46.51 Aligned_cols=20 Identities=30% Similarity=0.461 Sum_probs=17.7
Q ss_pred ceeeCCCCCCHHHHHHHHhh
Q 037346 963 LVLRGRTGSGKSTLIQTLFR 982 (1156)
Q Consensus 963 ~vL~G~SGsGKSTL~~lL~r 982 (1156)
++|.|.+|+|||||++-+.+
T Consensus 6 ivlvG~~~vGKTsLi~r~~~ 25 (167)
T d1z08a1 6 VVLLGEGCVGKTSLVLRYCE 25 (167)
T ss_dssp EEEECCTTSCHHHHHHHHHH
T ss_pred EEEECCCCcCHHHHHHHHHh
Confidence 68899999999999997753
|
| >d2jdid3 c.37.1.11 (D:82-357) Central domain of beta subunit of F1 ATP synthase {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Central domain of beta subunit of F1 ATP synthase species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=83.06 E-value=0.24 Score=50.95 Aligned_cols=30 Identities=17% Similarity=0.308 Sum_probs=26.5
Q ss_pred eEEeeCCeEEEEEcCCCCChHHHHHHHhCC
Q 037346 380 NLKVFHGMRVAVCGTVGSGKSSCLSCILGG 409 (1156)
Q Consensus 380 ~l~i~~g~~~~ivG~~GsGKSTll~~i~g~ 409 (1156)
=+.+-+|+..+|.|+.|+|||||+.-|..-
T Consensus 62 l~pigkGQr~~If~~~g~GKt~l~~~i~~~ 91 (276)
T d2jdid3 62 LAPYAKGGKIGLFGGAGVGKTVLIMELINN 91 (276)
T ss_dssp HSCEETTCEEEEEECTTSSHHHHHHHHHHH
T ss_pred eccccCCCEEEeeCCCCCCHHHHHHHHHHH
Confidence 368999999999999999999998877654
|
| >d1g41a_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: HslU species: Haemophilus influenzae [TaxId: 727]
Probab=83.05 E-value=0.26 Score=54.65 Aligned_cols=36 Identities=19% Similarity=0.492 Sum_probs=27.3
Q ss_pred CceeeCCCCCCHHHHHHHHhhcccCCCceEEEcCeeCC
Q 037346 962 PLVLRGRTGSGKSTLIQTLFRIVESTAGHILIDGKDIS 999 (1156)
Q Consensus 962 ~~vL~G~SGsGKSTL~~lL~rl~~p~~G~I~idG~di~ 999 (1156)
.+.|.||||||||-|++.|+++.+.- -+.+|+...+
T Consensus 51 NILliGPTGvGKTlLAr~LAk~l~VP--Fv~~daT~fT 86 (443)
T d1g41a_ 51 NILMIGPTGVGKTEIARRLAKLANAP--FIKVEATKFT 86 (443)
T ss_dssp CEEEECCTTSSHHHHHHHHHHHTTCC--EEEEEGGGGC
T ss_pred cEEEECCCCCCHHHHHHHHHHHhCCC--EEEeecceee
Confidence 46788999999999999999988643 3555554444
|
| >d2bv3a2 c.37.1.8 (A:7-282) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor G (EF-G), N-terminal (G) domain species: Thermus thermophilus [TaxId: 274]
Probab=83.02 E-value=0.26 Score=50.89 Aligned_cols=20 Identities=20% Similarity=0.484 Sum_probs=18.4
Q ss_pred EEEEEcCCCCChHHHHHHHh
Q 037346 388 RVAVCGTVGSGKSSCLSCIL 407 (1156)
Q Consensus 388 ~~~ivG~~GsGKSTll~~i~ 407 (1156)
-++|+|+.|||||||...|+
T Consensus 8 ni~i~gh~~~GKTtL~e~ll 27 (276)
T d2bv3a2 8 NIGIAAHIDAGKTTTTERIL 27 (276)
T ss_dssp EEEEEECTTSCHHHHHHHHH
T ss_pred EEEEEeCCCCCHHHHHHHHH
Confidence 47999999999999999885
|
| >d1fzqa_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL3 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Mouse (Mus musculus), ARL3 [TaxId: 10090]
Probab=82.85 E-value=0.21 Score=47.59 Aligned_cols=20 Identities=35% Similarity=0.599 Sum_probs=17.7
Q ss_pred ceeeCCCCCCHHHHHHHHhh
Q 037346 963 LVLRGRTGSGKSTLIQTLFR 982 (1156)
Q Consensus 963 ~vL~G~SGsGKSTL~~lL~r 982 (1156)
+++.|+.|+|||||++.|.+
T Consensus 19 I~vvG~~~vGKSsLi~~l~~ 38 (176)
T d1fzqa_ 19 ILLLGLDNAGKTTLLKQLAS 38 (176)
T ss_dssp EEEEESTTSSHHHHHHHHCC
T ss_pred EEEECCCCCCHHHHHHHHhc
Confidence 57889999999999998854
|
| >d2bmja1 c.37.1.8 (A:66-240) Centaurin gamma 1, G domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Centaurin gamma 1, G domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=82.83 E-value=0.31 Score=46.69 Aligned_cols=21 Identities=38% Similarity=0.537 Sum_probs=17.8
Q ss_pred CceeeCCCCCCHHHHHHHHhh
Q 037346 962 PLVLRGRTGSGKSTLIQTLFR 982 (1156)
Q Consensus 962 ~~vL~G~SGsGKSTL~~lL~r 982 (1156)
++++.|.+|+|||||++-+.+
T Consensus 7 ki~vlG~~~vGKTsLi~~~~~ 27 (175)
T d2bmja1 7 RLGVLGDARSGKSSLIHRFLT 27 (175)
T ss_dssp EEEEECCTTTTHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 357889999999999997755
|
| >d1kaoa_ c.37.1.8 (A:) Rap2a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rap2a species: Human (Homo sapiens) [TaxId: 9606]
Probab=82.56 E-value=0.27 Score=46.48 Aligned_cols=20 Identities=35% Similarity=0.536 Sum_probs=17.8
Q ss_pred ceeeCCCCCCHHHHHHHHhh
Q 037346 963 LVLRGRTGSGKSTLIQTLFR 982 (1156)
Q Consensus 963 ~vL~G~SGsGKSTL~~lL~r 982 (1156)
+++.|.+|+|||||++.+.+
T Consensus 6 i~lvG~~~vGKTsLi~r~~~ 25 (167)
T d1kaoa_ 6 VVVLGSGGVGKSALTVQFVT 25 (167)
T ss_dssp EEEECCTTSSHHHHHHHHHH
T ss_pred EEEECCCCcCHHHHHHHHHh
Confidence 67889999999999998864
|
| >d1n0wa_ c.37.1.11 (A:) DNA repair protein Rad51, catalytic domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=82.54 E-value=0.27 Score=48.23 Aligned_cols=26 Identities=19% Similarity=0.172 Sum_probs=20.3
Q ss_pred cCCCCceeeCCCCCCHHHHHHHHhhc
Q 037346 958 APNLPLVLRGRTGSGKSTLIQTLFRI 983 (1156)
Q Consensus 958 ~~~~~~vL~G~SGsGKSTL~~lL~rl 983 (1156)
+++.-..|.|++|||||||+.-++.-
T Consensus 21 ~~G~v~~i~G~~GsGKT~l~l~la~~ 46 (242)
T d1n0wa_ 21 ETGSITEMFGEFRTGKTQICHTLAVT 46 (242)
T ss_dssp ETTSEEEEECCTTSSHHHHHHHHHHH
T ss_pred cCCEEEEEEeCCCCCHHHHHHHHHHH
Confidence 45555677899999999999877653
|
| >d1wp9a1 c.37.1.19 (A:1-200) putative ATP-dependent RNA helicase PF2015 {Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: putative ATP-dependent RNA helicase PF2015 species: Pyrococcus furiosus [TaxId: 2261]
Probab=82.38 E-value=0.55 Score=45.55 Aligned_cols=40 Identities=20% Similarity=0.287 Sum_probs=25.4
Q ss_pred ccccCCCEEEEecCCcCCCHHHHHHHHHHHHHhcCCceEE
Q 037346 1065 VLLKKSKVLVLDEATASVDTATDNQIQQTLRQHFSDCTVV 1104 (1156)
Q Consensus 1065 ALLr~~~ILiLDEaTS~LD~~te~~I~~~l~~~~~~~TvI 1104 (1156)
...++-+++|+||+=.-.+......+...+....++.-++
T Consensus 121 ~~~~~~~~vIiDE~H~~~~~~~~~~~~~~~~~~~~~~~~l 160 (200)
T d1wp9a1 121 ISLEDVSLIVFDEAHRAVGNYAYVFIAREYKRQAKNPLVI 160 (200)
T ss_dssp CCTTSCSEEEEETGGGCSTTCHHHHHHHHHHHHCSSCCEE
T ss_pred hhccccceEEEEehhhhhcchhHHHHHHHHHhcCCCCcEE
Confidence 3455778999999976666666666665555544443333
|
| >d1a7ja_ c.37.1.6 (A:) Phosphoribulokinase {Rhodobacter sphaeroides [TaxId: 1063]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Phosphoribulokinase species: Rhodobacter sphaeroides [TaxId: 1063]
Probab=82.03 E-value=0.15 Score=52.94 Aligned_cols=23 Identities=30% Similarity=0.541 Sum_probs=16.7
Q ss_pred ceeeCCCCCCHHHHHHHHhhccc
Q 037346 963 LVLRGRTGSGKSTLIQTLFRIVE 985 (1156)
Q Consensus 963 ~vL~G~SGsGKSTL~~lL~rl~~ 985 (1156)
+++.|.|||||||+.+.|...+.
T Consensus 7 IgIaG~SGSGKTTva~~l~~i~~ 29 (288)
T d1a7ja_ 7 ISVTGSSGAGTSTVKHTFDQIFR 29 (288)
T ss_dssp EEEESCC---CCTHHHHHHHHHH
T ss_pred EEEECCCCCcHHHHHHHHHHHHh
Confidence 35779999999999999987664
|
| >d1ctqa_ c.37.1.8 (A:) cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: cH-p21 Ras protein species: Human (Homo sapiens) [TaxId: 9606]
Probab=81.94 E-value=0.26 Score=46.52 Aligned_cols=20 Identities=45% Similarity=0.639 Sum_probs=17.8
Q ss_pred ceeeCCCCCCHHHHHHHHhh
Q 037346 963 LVLRGRTGSGKSTLIQTLFR 982 (1156)
Q Consensus 963 ~vL~G~SGsGKSTL~~lL~r 982 (1156)
+++.|++|+|||||++.+.+
T Consensus 6 i~viG~~~vGKTsli~~l~~ 25 (166)
T d1ctqa_ 6 LVVVGAGGVGKSALTIQLIQ 25 (166)
T ss_dssp EEEEESTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHh
Confidence 67889999999999998864
|
| >d2fnaa2 c.37.1.20 (A:1-283) Archaeal ATPase SSO1545 {Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Archaeal ATPase SSO1545 species: Sulfolobus solfataricus [TaxId: 2287]
Probab=81.80 E-value=0.25 Score=50.52 Aligned_cols=23 Identities=22% Similarity=0.283 Sum_probs=18.9
Q ss_pred CceeeCCCCCCHHHHHHHHhhcc
Q 037346 962 PLVLRGRTGSGKSTLIQTLFRIV 984 (1156)
Q Consensus 962 ~~vL~G~SGsGKSTL~~lL~rl~ 984 (1156)
.++|.|++|+|||||++-+++-.
T Consensus 31 ~i~i~G~~G~GKTsLl~~~~~~~ 53 (283)
T d2fnaa2 31 ITLVLGLRRTGKSSIIKIGINEL 53 (283)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHH
T ss_pred EEEEEcCCCCcHHHHHHHHHHHC
Confidence 35688999999999999876644
|
| >d1wxqa1 c.37.1.8 (A:1-319) GTP-binding protein PH0525 {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein PH0525 species: Pyrococcus horikoshii [TaxId: 53953]
Probab=81.65 E-value=0.31 Score=51.63 Aligned_cols=22 Identities=27% Similarity=0.294 Sum_probs=19.9
Q ss_pred EEEEEcCCCCChHHHHHHHhCC
Q 037346 388 RVAVCGTVGSGKSSCLSCILGG 409 (1156)
Q Consensus 388 ~~~ivG~~GsGKSTll~~i~g~ 409 (1156)
.+||||..-+|||||+++|.|-
T Consensus 2 ~v~lvG~pn~GKStlfn~lt~~ 23 (319)
T d1wxqa1 2 EIGVVGKPNVGKSTFFSAATLV 23 (319)
T ss_dssp EEEEEECTTSSHHHHHHHHHC-
T ss_pred cEeEECCCCCCHHHHHHHHHCC
Confidence 3899999999999999999985
|
| >d1vhta_ c.37.1.1 (A:) Dephospho-CoA kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Dephospho-CoA kinase species: Escherichia coli [TaxId: 562]
Probab=81.20 E-value=0.32 Score=48.06 Aligned_cols=20 Identities=40% Similarity=0.596 Sum_probs=17.2
Q ss_pred ceeeCCCCCCHHHHHHHHhh
Q 037346 963 LVLRGRTGSGKSTLIQTLFR 982 (1156)
Q Consensus 963 ~vL~G~SGsGKSTL~~lL~r 982 (1156)
++|.|..||||||..+.|..
T Consensus 6 IgitG~igSGKStv~~~l~~ 25 (208)
T d1vhta_ 6 VALTGGIGSGKSTVANAFAD 25 (208)
T ss_dssp EEEECCTTSCHHHHHHHHHH
T ss_pred EEEECCCcCCHHHHHHHHHH
Confidence 46889999999999998853
|
| >d2f9la1 c.37.1.8 (A:8-182) Rab11b {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
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class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab11b species: Human (Homo sapiens) [TaxId: 9606]
Probab=81.19 E-value=0.32 Score=46.41 Aligned_cols=20 Identities=45% Similarity=0.733 Sum_probs=17.7
Q ss_pred ceeeCCCCCCHHHHHHHHhh
Q 037346 963 LVLRGRTGSGKSTLIQTLFR 982 (1156)
Q Consensus 963 ~vL~G~SGsGKSTL~~lL~r 982 (1156)
+++.|+.|+|||||++.+.+
T Consensus 7 i~vvG~~~vGKTsLi~~~~~ 26 (175)
T d2f9la1 7 VVLIGDSGVGKSNLLSRFTR 26 (175)
T ss_dssp EEEESSTTSSHHHHHHHHHH
T ss_pred EEEECCCCcCHHHHHHHHHh
Confidence 67889999999999998754
|
| >d2gjsa1 c.37.1.8 (A:91-258) Rad {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
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class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rad species: Human (Homo sapiens) [TaxId: 9606]
Probab=81.17 E-value=0.33 Score=45.98 Aligned_cols=22 Identities=32% Similarity=0.468 Sum_probs=18.7
Q ss_pred ceeeCCCCCCHHHHHHHHhhcc
Q 037346 963 LVLRGRTGSGKSTLIQTLFRIV 984 (1156)
Q Consensus 963 ~vL~G~SGsGKSTL~~lL~rl~ 984 (1156)
+++.|.+|+|||||++.+.+..
T Consensus 4 i~lvG~~~vGKTsLi~~~~~~~ 25 (168)
T d2gjsa1 4 VLLLGAPGVGKSALARIFGGVE 25 (168)
T ss_dssp EEEECCTTSSHHHHHHHHHTC-
T ss_pred EEEECCCCcCHHHHHHHHhCCc
Confidence 5788999999999999887654
|
| >d2a5ja1 c.37.1.8 (A:9-181) Rab2b {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
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class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab2b species: Human (Homo sapiens) [TaxId: 9606]
Probab=80.99 E-value=0.32 Score=46.22 Aligned_cols=20 Identities=35% Similarity=0.569 Sum_probs=17.6
Q ss_pred ceeeCCCCCCHHHHHHHHhh
Q 037346 963 LVLRGRTGSGKSTLIQTLFR 982 (1156)
Q Consensus 963 ~vL~G~SGsGKSTL~~lL~r 982 (1156)
+++.|.+|+|||||++-+.+
T Consensus 6 ivvvG~~~vGKTsli~r~~~ 25 (173)
T d2a5ja1 6 YIIIGDTGVGKSCLLLQFTD 25 (173)
T ss_dssp EEEESSTTSSHHHHHHHHHH
T ss_pred EEEECCCCcCHHHHHHHHhc
Confidence 67889999999999998763
|
| >d1ni3a1 c.37.1.8 (A:11-306) YchF GTP-binding protein N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} | Back information, alignment and structure |
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class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: YchF GTP-binding protein N-terminal domain species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]
Probab=80.94 E-value=0.32 Score=51.00 Aligned_cols=22 Identities=23% Similarity=0.409 Sum_probs=20.6
Q ss_pred EEEEEcCCCCChHHHHHHHhCC
Q 037346 388 RVAVCGTVGSGKSSCLSCILGG 409 (1156)
Q Consensus 388 ~~~ivG~~GsGKSTll~~i~g~ 409 (1156)
.+||||...||||||+++|++-
T Consensus 12 kiGivG~Pn~GKSTlfnalT~~ 33 (296)
T d1ni3a1 12 KTGIVGMPNVGKSTFFRAITKS 33 (296)
T ss_dssp EEEEEECSSSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHCC
Confidence 5999999999999999999975
|
| >d2f7sa1 c.37.1.8 (A:5-190) Rab27b {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
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class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab27b species: Human (Homo sapiens) [TaxId: 9606]
Probab=80.89 E-value=0.33 Score=46.77 Aligned_cols=20 Identities=30% Similarity=0.501 Sum_probs=17.8
Q ss_pred ceeeCCCCCCHHHHHHHHhh
Q 037346 963 LVLRGRTGSGKSTLIQTLFR 982 (1156)
Q Consensus 963 ~vL~G~SGsGKSTL~~lL~r 982 (1156)
+++.|.+|+|||||++.+.+
T Consensus 8 i~ivG~~~vGKTsLi~~l~~ 27 (186)
T d2f7sa1 8 LLALGDSGVGKTTFLYRYTD 27 (186)
T ss_dssp EEEESCTTSSHHHHHHHHHC
T ss_pred EEEECCCCcCHHHHHHHHhc
Confidence 67889999999999998864
|
| >d1e32a2 c.37.1.20 (A:201-458) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
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class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Membrane fusion ATPase VCP/p97 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=80.88 E-value=0.33 Score=49.70 Aligned_cols=22 Identities=23% Similarity=0.484 Sum_probs=19.8
Q ss_pred ceeeCCCCCCHHHHHHHHhhcc
Q 037346 963 LVLRGRTGSGKSTLIQTLFRIV 984 (1156)
Q Consensus 963 ~vL~G~SGsGKSTL~~lL~rl~ 984 (1156)
+.|.||+|+|||++++++.+..
T Consensus 41 iLL~GppGtGKT~l~~ala~~~ 62 (258)
T d1e32a2 41 ILLYGPPGTGKTLIARAVANET 62 (258)
T ss_dssp EEEECCTTSSHHHHHHHHHHHT
T ss_pred eEEecCCCCCchHHHHHHHHHh
Confidence 5788999999999999999864
|
| >d2ew1a1 c.37.1.8 (A:4-174) Rab30 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
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class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab30 species: Human (Homo sapiens) [TaxId: 9606]
Probab=80.72 E-value=0.31 Score=46.28 Aligned_cols=20 Identities=35% Similarity=0.690 Sum_probs=18.1
Q ss_pred ceeeCCCCCCHHHHHHHHhh
Q 037346 963 LVLRGRTGSGKSTLIQTLFR 982 (1156)
Q Consensus 963 ~vL~G~SGsGKSTL~~lL~r 982 (1156)
+++.|.+|+|||||++.+..
T Consensus 8 i~lvG~~~vGKTsLi~~l~~ 27 (171)
T d2ew1a1 8 IVLIGNAGVGKTCLVRRFTQ 27 (171)
T ss_dssp EEEEESTTSSHHHHHHHHHH
T ss_pred EEEECCCCcCHHHHHHHHHh
Confidence 68889999999999998875
|
| >d1l8qa2 c.37.1.20 (A:77-289) Chromosomal replication initiation factor DnaA {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
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class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Chromosomal replication initiation factor DnaA species: Aquifex aeolicus [TaxId: 63363]
Probab=80.59 E-value=0.37 Score=47.80 Aligned_cols=42 Identities=26% Similarity=0.394 Sum_probs=28.0
Q ss_pred ccCCCeeeeeCCCCCc-CHHHHHHHHHHHHh--cCCCEEEEEccC
Q 037346 498 YQDADIFLLDDPFSPV-DDHTGAHLFKFCWV--SSSKTVIYATHQ 539 (1156)
Q Consensus 498 ~~~~~illlDep~s~l-D~~~~~~i~~~~~~--~~~~tvi~vtH~ 539 (1156)
+.+.+++++||.=.-. +...+..++..+-. ..|+.+|+++..
T Consensus 95 ~~~~dll~iDDi~~i~~~~~~~~~lf~lin~~~~~~~~iiits~~ 139 (213)
T d1l8qa2 95 YKSVDLLLLDDVQFLSGKERTQIEFFHIFNTLYLLEKQIILASDR 139 (213)
T ss_dssp HHTCSEEEEECGGGGTTCHHHHHHHHHHHHHHHHTTCEEEEEESS
T ss_pred HhhccchhhhhhhhhcCchHHHHHHHHHHHHHhhccceEEEecCC
Confidence 6689999999984433 45666667664422 467777776664
|
| >d1x1ra1 c.37.1.8 (A:10-178) Ras-related protein M-Ras (XRas) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
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class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ras-related protein M-Ras (XRas) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=80.56 E-value=0.55 Score=44.34 Aligned_cols=20 Identities=45% Similarity=0.710 Sum_probs=17.6
Q ss_pred ceeeCCCCCCHHHHHHHHhh
Q 037346 963 LVLRGRTGSGKSTLIQTLFR 982 (1156)
Q Consensus 963 ~vL~G~SGsGKSTL~~lL~r 982 (1156)
+++.|.+|+|||||++-+..
T Consensus 7 i~lvG~~~vGKTsll~~~~~ 26 (169)
T d1x1ra1 7 LVVVGDGGVGKSALTIQFFQ 26 (169)
T ss_dssp EEEECCTTSSHHHHHHHHHH
T ss_pred EEEECCCCcCHHHHHHHHHh
Confidence 57889999999999998764
|
| >d2g3ya1 c.37.1.8 (A:73-244) GTP-binding protein GEM {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
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class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein GEM species: Human (Homo sapiens) [TaxId: 9606]
Probab=80.42 E-value=0.39 Score=45.60 Aligned_cols=22 Identities=41% Similarity=0.561 Sum_probs=19.3
Q ss_pred ceeeCCCCCCHHHHHHHHhhcc
Q 037346 963 LVLRGRTGSGKSTLIQTLFRIV 984 (1156)
Q Consensus 963 ~vL~G~SGsGKSTL~~lL~rl~ 984 (1156)
+++.|.+|+|||||++.+.+-.
T Consensus 6 v~lvG~~~vGKTsLi~~~~~~~ 27 (172)
T d2g3ya1 6 VVLIGEQGVGKSTLANIFAGVH 27 (172)
T ss_dssp EEEECCTTSSHHHHHHHHHCCC
T ss_pred EEEECCCCcCHHHHHHHHHhCc
Confidence 6788999999999999987654
|
| >d1wmsa_ c.37.1.8 (A:) Rab9a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
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class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab9a species: Human (Homo sapiens) [TaxId: 9606]
Probab=80.40 E-value=0.35 Score=45.97 Aligned_cols=20 Identities=35% Similarity=0.632 Sum_probs=17.3
Q ss_pred ceeeCCCCCCHHHHHHHHhh
Q 037346 963 LVLRGRTGSGKSTLIQTLFR 982 (1156)
Q Consensus 963 ~vL~G~SGsGKSTL~~lL~r 982 (1156)
+++.|++|+|||||++-+.+
T Consensus 9 I~vvG~~~vGKSSli~~~~~ 28 (174)
T d1wmsa_ 9 VILLGDGGVGKSSLMNRYVT 28 (174)
T ss_dssp EEEECCTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHh
Confidence 57889999999999987754
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| >d1nn5a_ c.37.1.1 (A:) Thymidylate kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
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class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=80.12 E-value=0.34 Score=47.92 Aligned_cols=25 Identities=32% Similarity=0.361 Sum_probs=20.5
Q ss_pred CCceeeCCCCCCHHHHHHHHhhccc
Q 037346 961 LPLVLRGRTGSGKSTLIQTLFRIVE 985 (1156)
Q Consensus 961 ~~~vL~G~SGsGKSTL~~lL~rl~~ 985 (1156)
.-+++.|+-||||||++++|..-+.
T Consensus 4 ~lI~ieG~dGsGKsT~~~~L~~~L~ 28 (209)
T d1nn5a_ 4 ALIVLEGVDRAGKSTQSRKLVEALC 28 (209)
T ss_dssp CEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHH
Confidence 3356779999999999999977654
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| >d1tmka_ c.37.1.1 (A:) Thymidylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
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class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=80.10 E-value=0.34 Score=48.10 Aligned_cols=26 Identities=19% Similarity=0.425 Sum_probs=21.4
Q ss_pred CCCceeeCCCCCCHHHHHHHHhhccc
Q 037346 960 NLPLVLRGRTGSGKSTLIQTLFRIVE 985 (1156)
Q Consensus 960 ~~~~vL~G~SGsGKSTL~~lL~rl~~ 985 (1156)
|.-+++.|.-||||||++++|...++
T Consensus 3 Gk~I~iEG~DGsGKST~~~~L~~~L~ 28 (214)
T d1tmka_ 3 GKLILIEGLDRTGKTTQCNILYKKLQ 28 (214)
T ss_dssp CCEEEEEESTTSSHHHHHHHHHHHTT
T ss_pred eEEEEEECCCCCcHHHHHHHHHHHHH
Confidence 34467889999999999999986665
|
| >d1g16a_ c.37.1.8 (A:) Rab-related protein Sec4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
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class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-related protein Sec4 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=80.08 E-value=0.33 Score=45.72 Aligned_cols=20 Identities=35% Similarity=0.645 Sum_probs=17.4
Q ss_pred ceeeCCCCCCHHHHHHHHhh
Q 037346 963 LVLRGRTGSGKSTLIQTLFR 982 (1156)
Q Consensus 963 ~vL~G~SGsGKSTL~~lL~r 982 (1156)
+++.|.+|+|||||++.+..
T Consensus 5 i~vvG~~~vGKTSli~~l~~ 24 (166)
T d1g16a_ 5 ILLIGDSGVGKSCLLVRFVE 24 (166)
T ss_dssp EEEEESTTSSHHHHHHHHHH
T ss_pred EEEECCCCcCHHHHHHHHHh
Confidence 56779999999999998764
|
| >d1w44a_ c.37.1.11 (A:) NTPase P4 {Bacteriophage phi-12 [TaxId: 161736]} | Back information, alignment and structure |
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class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: NTPase P4 species: Bacteriophage phi-12 [TaxId: 161736]
Probab=80.03 E-value=0.29 Score=51.57 Aligned_cols=30 Identities=23% Similarity=0.293 Sum_probs=23.9
Q ss_pred eEEeeCCeEEEEEcCCCCChHHHHHHHhCCC
Q 037346 380 NLKVFHGMRVAVCGTVGSGKSSCLSCILGGV 410 (1156)
Q Consensus 380 ~l~i~~g~~~~ivG~~GsGKSTll~~i~g~~ 410 (1156)
-...++| .+.++||+|||||.|.+.|+++.
T Consensus 118 ~~~~~~g-~~l~~G~pG~GKT~la~ala~~~ 147 (321)
T d1w44a_ 118 GHRYASG-MVIVTGKGNSGKTPLVHALGEAL 147 (321)
T ss_dssp TEEEESE-EEEEECSSSSCHHHHHHHHHHHH
T ss_pred hcccCCc-eEEEECCCCccHHHHHHHHHHHh
Confidence 3455555 56668999999999999999875
|