Citrus Sinensis ID: 037353

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110
Protein Sequence
MESTSFVKFSLISLIWIIILMNEMHGDKACLQTERTALLELKSFFISISDREYEDVILTSWVDDGMPSDCCDDWEGVECNATTRRVMQLSLNGTRMLLCHNDIGVAGDFG
Secondary Structure (PSIPRED)
cccHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHccccccccccccccccccccccccccccccccEEEccccccEEEEEEccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
cccccccHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccEEEEcccccEEEEEEccccEEEEEccccEEEcccc
Coil and Loop (DISEMBL)
MESTSFVKFSLISLIWIIILMNEMHGDKACLQTERTALLELKSFFISISDREYEDVILTswvddgmpsdccddwegvecnaTTRRVMQLSLNGTrmllchndigvagdfg
Flexible Loop (DISEMBL)
mestsfvkFSLISLIWIIILMNEMHGDKACLQTERTALLELKSFFISISDREYEDVILTSWVDDGMPSDCCDDWEGVECNATTRRVMQLSLngtrmllchndigvagdfg
Low Complexity Region (SEG)
MESTSFVKFslisliwiiilMNEMHGDKACLQTERTALLELKSFFISISDREYEDVILTSWVDDGMPSDCCDDWEGVECNATTRRVMQLSLNGTRMLLCHNDIGVAGDFG
Disordered region (IsUnstruct)
*****FVKFSLISLIWIIILMNEMHGDKACLQTERTALLELKSFFISISDREYEDVILTSWVDDGMPSDCCDDWEGVECNATTRRVMQLSLNGTRMLLCHNDIGVA****
Disordered Region (DISOPRED)
*****FV*FSLISLIWIIILMNEMHGDKACLQTERTALLELKSFFISISDREYEDVILTSWVDDGMPSDCCDDWEGVECNATTRRVMQLSLNGTRMLLCHNDIGV*****
Disordered Region (DISEMBL)
MESTSFVKFSLISLIWIIILMNEMHGDKACLQTERTALLELKSFFISISDREYEDVILTSWVDDGMPSDCCDDWEGVECNATTRRVMQLSLNGTRMLLCHNDIGVAGDFG
Disordered Region (DISPRO)
***TSFVKFSLISLIWIIILMNEMHGDKACLQTERTALLELKSFFISISDR**EDVILTSWVDDGMPSDCCDDWEGVECNATTRRVMQLSLNGTRMLLCHNDIGVAGDFG
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSiiHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
SSSSSSSSSSSSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MESTSFVKFSLISLIWIIILMNEMHGDKACLQTERTALLELKSFFISISDREYEDVILTSWVDDGMPSDCCDDWEGVECNATTRRVMQLSLNGTRMLLCHNDIGVAGDFG
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	110
297842171	966	leucine-rich repeat family protein [Arab	0.718	0.081	0.407	1e-12
297745031	869	unnamed protein product [Vitis vinifera]	0.736	0.093	0.482	5e-12
12323813	951	disease resistance protein, putative; 63	0.763	0.088	0.418	7e-12
240254367	976	receptor like protein 14 [Arabidopsis th	0.763	0.086	0.418	7e-12
12323814	1068	disease resistance protein, putative; 11	0.681	0.070	0.448	2e-11
297821945	910	leucine-rich repeat family protein [Arab	0.654	0.079	0.445	3e-11
42516774	1044	RPP27 protein [Arabidopsis thaliana] gi|	0.736	0.077	0.361	6e-11
145336750	457	putative disease resistance protein [Ara	0.736	0.177	0.361	7e-11
4432858	910	putative disease resistance protein [Ara	0.654	0.079	0.418	2e-10
240254535	935	receptor like protein 21 [Arabidopsis th	0.654	0.077	0.418	2e-10

>gi|297842171|ref|XP_002888967.1| leucine-rich repeat family protein [Arabidopsis lyrata subsp. lyrata] gi|297334808|gb|EFH65226.1| leucine-rich repeat family protein [Arabidopsis lyrata subsp. lyrata]

 Score = 77.4 bits (189), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 33/81 (40%), Positives = 54/81 (66%), Gaps = 2/81 (2%)

Query: 13 SLIWIIILMNEMHGDKACLQTERTALLELKSFFISISDREYEDVILTSWVDDGMPSDCCD 72
          +LIW+++LM ++HG K+C+  ER AL EL+ + IS ++ +  D +L +W +D   SDCC 
Sbjct: 10 NLIWVMLLMGQLHGYKSCIDKERNALFELRKYMISRTEEDQSDSVLPTWTND-TTSDCC- 67

Query: 73 DWEGVECNATTRRVMQLSLNG 93
           W+GV CN  + RV +++  G
Sbjct: 68 RWKGVACNRVSGRVTEIAFGG 88

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297745031|emb|CBI38623.3| unnamed protein product [Vitis vinifera]

 Score = 75.1 bits (183), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 41/85 (48%), Positives = 53/85 (62%), Gaps = 4/85 (4%)

Query: 13 SLIWIIILMNEMHGDKACLQTERTALLELKSFFISISDREYEDVILTSWVDDGMPSDCCD 72
          S IW ++++ ++HG K CL+ ER  LLE K F    S+ E  D +L SWV+D   SDCC 
Sbjct: 8  SWIWALMILIQIHGYKCCLEKERMGLLEFKRFL--RSNNEDADRLLPSWVND-EESDCC- 63

Query: 73 DWEGVECNATTRRVMQLSLNGTRML 97
           WE V CN+TT  V QLSLN  R +
Sbjct: 64 YWERVVCNSTTGTVTQLSLNNIRQI 88

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|12323813|gb|AAG51872.1|AC079678_2 disease resistance protein, putative; 6346-10057 [Arabidopsis thaliana]

 Score = 74.7 bits (182), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 36/86 (41%), Positives = 58/86 (67%), Gaps = 2/86 (2%)

Query: 9  FSLISLIWIIILMNEMHGDKACLQTERTALLELKSFFISISDREYEDVILTSWVDDGMPS 68
          FS  +LIW+++L+ ++ G K C++ ER ALLELK + IS +     D +L +W +D   S
Sbjct: 6  FSGQNLIWVMLLLVQLRGYKCCIEKERKALLELKKYMISKTADWGLDSVLPTWTND-TKS 64

Query: 69 DCCDDWEGVECNATTRRVMQLSLNGT 94
          +CC  WEG++CN T+ R+++LS+  T
Sbjct: 65 NCC-RWEGLKCNQTSGRIIELSIGQT 89

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|240254367|ref|NP_177558.4| receptor like protein 14 [Arabidopsis thaliana] gi|332197442|gb|AEE35563.1| receptor like protein 14 [Arabidopsis thaliana]

 Score = 74.7 bits (182), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 36/86 (41%), Positives = 58/86 (67%), Gaps = 2/86 (2%)

Query: 9  FSLISLIWIIILMNEMHGDKACLQTERTALLELKSFFISISDREYEDVILTSWVDDGMPS 68
          FS  +LIW+++L+ ++ G K C++ ER ALLELK + IS +     D +L +W +D   S
Sbjct: 6  FSGQNLIWVMLLLVQLRGYKCCIEKERKALLELKKYMISKTADWGLDSVLPTWTND-TKS 64

Query: 69 DCCDDWEGVECNATTRRVMQLSLNGT 94
          +CC  WEG++CN T+ R+++LS+  T
Sbjct: 65 NCC-RWEGLKCNQTSGRIIELSIGQT 89

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|12323814|gb|AAG51873.1|AC079678_3 disease resistance protein, putative; 11609-15699 [Arabidopsis thaliana]

 Score = 73.2 bits (178), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 35/78 (44%), Positives = 53/78 (67%), Gaps = 3/78 (3%)

Query: 14 LIWIIILMNEMHGDKACLQTERTALLELKSFFISISDREYEDVILTSWVDDGMPSDCCDD 73
          LI +I+L+ ++HG K+C++ ER ALLELK+F I ++  E+ D +L SW +D   SDCC  
Sbjct: 11 LICVILLLGQLHGYKSCIEKERKALLELKAFLIPLNAGEWNDNVL-SWTND-TKSDCC-Q 67

Query: 74 WEGVECNATTRRVMQLSL 91
          W GVECN  + R+  ++ 
Sbjct: 68 WMGVECNRKSGRITNIAF 85

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297821945|ref|XP_002878855.1| leucine-rich repeat family protein [Arabidopsis lyrata subsp. lyrata] gi|297324694|gb|EFH55114.1| leucine-rich repeat family protein [Arabidopsis lyrata subsp. lyrata]

 Score = 72.4 bits (176), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 33/74 (44%), Positives = 50/74 (67%), Gaps = 2/74 (2%)

Query: 18 IILMNEMHGDKACLQTERTALLELKSFFISISDREYEDVILTSWVDDGMPSDCCDDWEGV 77
          ++L+ ++HG K C+  ER ALLELK + +S S     D +L +W +D   SDCC  W+G+
Sbjct: 1  MLLLGQLHGCKGCIMKEREALLELKKYLMSRSRESGLDYVLPTWTND-TKSDCC-QWDGI 58

Query: 78 ECNATTRRVMQLSL 91
          +CN T+RRV+ LS+
Sbjct: 59 KCNRTSRRVIGLSV 72

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|42516774|emb|CAE51863.1| RPP27 protein [Arabidopsis thaliana] gi|42516776|emb|CAE51864.1| RPP27 protein [Arabidopsis thaliana]

 Score = 71.2 bits (173), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 30/83 (36%), Positives = 54/83 (65%), Gaps = 2/83 (2%)

Query: 14  LIWIIILMNEMHGDKACLQTERTALLELKSFFISISDREYEDVILTSWVDDGMPSDCCDD 73
           LIW+I+L+ ++H  K+C++ ER ALL+ K +++SI+     D +  +W +D   SDCC  
Sbjct: 110 LIWVILLLGQLHECKSCIEKERVALLDFKKYWMSITQESDLDYVFPTWNND-TKSDCC-Q 167

Query: 74  WEGVECNATTRRVMQLSLNGTRM 96
           WE + CN T+ R+++L +  + +
Sbjct: 168 WESIMCNPTSGRLIRLHVGASNL 190

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|145336750|ref|NP_175849.2| putative disease resistance protein [Arabidopsis thaliana] gi|332194986|gb|AEE33107.1| putative disease resistance protein [Arabidopsis thaliana]

 Score = 71.2 bits (173), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 30/83 (36%), Positives = 54/83 (65%), Gaps = 2/83 (2%)

Query: 14  LIWIIILMNEMHGDKACLQTERTALLELKSFFISISDREYEDVILTSWVDDGMPSDCCDD 73
           LIW+I+L+ ++H  K+C++ ER ALL+ K +++SI+     D +  +W +D   SDCC  
Sbjct: 110 LIWVILLLGQLHECKSCIEKERVALLDFKKYWMSITQESDLDYVFPTWNND-TKSDCC-Q 167

Query: 74  WEGVECNATTRRVMQLSLNGTRM 96
           WE + CN T+ R+++L +  + +
Sbjct: 168 WESIMCNPTSGRLIRLHVGASNL 190

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|4432858|gb|AAD20706.1| putative disease resistance protein [Arabidopsis thaliana]

 Score = 69.7 bits (169), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 31/74 (41%), Positives = 51/74 (68%), Gaps = 2/74 (2%)

Query: 18 IILMNEMHGDKACLQTERTALLELKSFFISISDREYEDVILTSWVDDGMPSDCCDDWEGV 77
          ++L+ ++HG  +C++ ER ALLELK + +S S     D +L +W +D   SDCC  W+G+
Sbjct: 1  MLLLGQLHGCTSCIEKEREALLELKKYLMSRSRESGLDYVLPTWTND-TKSDCC-QWDGI 58

Query: 78 ECNATTRRVMQLSL 91
          +CN T+ RV++LS+
Sbjct: 59 KCNRTSGRVIELSV 72

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|240254535|ref|NP_180117.4| receptor like protein 21 [Arabidopsis thaliana] gi|330252611|gb|AEC07705.1| receptor like protein 21 [Arabidopsis thaliana]

 Score = 69.7 bits (169), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 31/74 (41%), Positives = 51/74 (68%), Gaps = 2/74 (2%)

Query: 18 IILMNEMHGDKACLQTERTALLELKSFFISISDREYEDVILTSWVDDGMPSDCCDDWEGV 77
          ++L+ ++HG  +C++ ER ALLELK + +S S     D +L +W +D   SDCC  W+G+
Sbjct: 1  MLLLGQLHGCTSCIEKEREALLELKKYLMSRSRESGLDYVLPTWTND-TKSDCC-QWDGI 58

Query: 78 ECNATTRRVMQLSL 91
          +CN T+ RV++LS+
Sbjct: 59 KCNRTSGRVIELSV 72

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	110
TAIR|locus:2040075	935	RLP21 "AT2G25470" [Arabidopsis	0.627	0.073	0.422	5.2e-11
TAIR|locus:2155909	908	RLP56 "AT5G49290" [Arabidopsis	0.618	0.074	0.458	1e-10
TAIR|locus:2037308	976	RLP14 "AT1G74180" [Arabidopsis	0.636	0.071	0.416	1.7e-09
TAIR|locus:2019662	965	RLP15 "AT1G74190" [Arabidopsis	0.618	0.070	0.397	9.4e-09
TAIR|locus:2026408	540	RPK1 "receptor-like protein ki	0.463	0.094	0.383	0.00014
TAIR|locus:2096349	860	RLP31 "receptor like protein 3	0.536	0.068	0.4	0.00015
TAIR|locus:2182260	371	AT5G12940 [Arabidopsis thalian	0.509	0.150	0.384	0.00022
TAIR|locus:2094603	835	RLP37 "receptor like protein 3	0.518	0.068	0.419	0.00064
TAIR|locus:2154463	589	AT5G23400 [Arabidopsis thalian	0.481	0.089	0.412	0.00087

TAIR|locus:2040075 RLP21 "AT2G25470" [Arabidopsis thaliana (taxid:3702)]

 Score = 165 (63.1 bits), Expect = 5.2e-11, P = 5.2e-11
 Identities = 30/71 (42%), Positives = 48/71 (67%)

Query:    21 MNEMHGDKACLQTERTALLELKSFFISISDREYEDVILTSWVDDGMPSDCCDDWEGVECN 80
             + ++HG  +C++ ER ALLELK + +S S     D +L +W +D   SDCC  W+G++CN
Sbjct:     4 LGQLHGCTSCIEKEREALLELKKYLMSRSRESGLDYVLPTWTND-TKSDCCQ-WDGIKCN 61

Query:    81 ATTRRVMQLSL 91
              T+ RV++LS+
Sbjct:    62 RTSGRVIELSV 72

GO:0007165 "signal transduction" evidence=IC

GO:0009507 "chloroplast" evidence=IDA

TAIR|locus:2155909 RLP56 "AT5G49290" [Arabidopsis thaliana (taxid:3702)]

 Score = 162 (62.1 bits), Expect = 1.0e-10, P = 1.0e-10
 Identities = 33/72 (45%), Positives = 47/72 (65%)

Query:    21 MNEMHGDKACLQTERTALLELKSFFISISDR-EYEDVILTSWVDDGMPSDCCDDWEGVEC 79
             +  +HG  +C++ ER ALLELK F +S  +  EY D +L +W +D   SDCC  WE ++C
Sbjct:     4 LGHLHGFSSCIEKERKALLELKKFVMSRCEECEY-DSVLPTWTND-TKSDCCQ-WENIKC 60

Query:    80 NATTRRVMQLSL 91
             N T+RR+  LSL
Sbjct:    61 NRTSRRLTGLSL 72

GO:0007165 "signal transduction" evidence=IC

TAIR|locus:2037308 RLP14 "AT1G74180" [Arabidopsis thaliana (taxid:3702)]

 Score = 151 (58.2 bits), Expect = 1.7e-09, P = 1.7e-09
 Identities = 30/72 (41%), Positives = 47/72 (65%)

Query:    23 EMHGDKACLQTERTALLELKSFFISISDREYEDVILTSWVDDGMPSDCCDDWEGVECNAT 82
             ++ G K C++ ER ALLELK + IS +     D +L +W +D   S+CC  WEG++CN T
Sbjct:    20 QLRGYKCCIEKERKALLELKKYMISKTADWGLDSVLPTWTND-TKSNCCR-WEGLKCNQT 77

Query:    83 TRRVMQLSLNGT 94
             + R+++LS+  T
Sbjct:    78 SGRIIELSIGQT 89

GO:0007165 "signal transduction" evidence=IC

GO:0009507 "chloroplast" evidence=IDA

TAIR|locus:2019662 RLP15 "AT1G74190" [Arabidopsis thaliana (taxid:3702)]

 Score = 144 (55.7 bits), Expect = 9.4e-09, P = 9.4e-09
 Identities = 29/73 (39%), Positives = 44/73 (60%)

Query:    21 MNEMHGDKACLQTERTALLELKSFFISISDREYEDVILTSWVDDGMPSDCCDDWEGVECN 80
             M ++HG K+C+  E+ AL EL+   IS ++ E    +L +W +D   SDCC  W+GV CN
Sbjct:    18 MGQLHGYKSCIDEEKIALFELRKHMISRTESES---VLPTWTND-TTSDCCR-WKGVACN 72

Query:    81 ATTRRVMQLSLNG 93
               + RV ++S  G
Sbjct:    73 RVSGRVTEISFGG 85

GO:0007165 "signal transduction" evidence=IC

TAIR|locus:2026408 RPK1 "receptor-like protein kinase 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 89 (36.4 bits), Expect = 0.00014, Sum P(2) = 0.00014
 Identities = 23/60 (38%), Positives = 33/60 (55%)

Query:    34 ERTALLELKSFFISISDREYEDVILTSWVDDGMPSDCCDDWEGVECNATTRRVMQLSLNG 93
             +  ALL+LKS F+  +       +L+SWV D   + C   W GV CN+ +R V+ L L G
Sbjct:    32 DEAALLKLKSSFLDPNG------VLSSWVSDSSSNHC--SWYGVSCNSDSR-VVSLILRG 82

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005886 "plasma membrane" evidence=ISM;IDA

GO:0006468 "protein phosphorylation" evidence=IEA

GO:0016301 "kinase activity" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0009737 "response to abscisic acid stimulus" evidence=IEP;RCA

GO:0009738 "abscisic acid mediated signaling pathway" evidence=RCA;IMP

GO:0009942 "longitudinal axis specification" evidence=IMP

GO:0009945 "radial axis specification" evidence=IMP

GO:0048508 "embryonic meristem development" evidence=IMP

GO:0005777 "peroxisome" evidence=IDA

GO:0000165 "MAPK cascade" evidence=RCA

GO:0000303 "response to superoxide" evidence=RCA

GO:0006499 "N-terminal protein myristoylation" evidence=RCA

GO:0006612 "protein targeting to membrane" evidence=RCA

GO:0007154 "cell communication" evidence=RCA

GO:0007165 "signal transduction" evidence=RCA

GO:0008219 "cell death" evidence=RCA

GO:0009409 "response to cold" evidence=IEP;RCA

GO:0009414 "response to water deprivation" evidence=IEP;RCA

GO:0009611 "response to wounding" evidence=RCA

GO:0009651 "response to salt stress" evidence=IEP;RCA

GO:0009723 "response to ethylene stimulus" evidence=RCA

GO:0009733 "response to auxin stimulus" evidence=RCA

GO:0009743 "response to carbohydrate stimulus" evidence=RCA

GO:0009753 "response to jasmonic acid stimulus" evidence=RCA

GO:0009755 "hormone-mediated signaling pathway" evidence=RCA

GO:0009862 "systemic acquired resistance, salicylic acid mediated signaling pathway" evidence=RCA

GO:0009863 "salicylic acid mediated signaling pathway" evidence=RCA

GO:0009867 "jasmonic acid mediated signaling pathway" evidence=RCA

GO:0009873 "ethylene mediated signaling pathway" evidence=RCA

GO:0010363 "regulation of plant-type hypersensitive response" evidence=RCA

GO:0030968 "endoplasmic reticulum unfolded protein response" evidence=RCA

GO:0031348 "negative regulation of defense response" evidence=RCA

GO:0042538 "hyperosmotic salinity response" evidence=RCA

GO:0043069 "negative regulation of programmed cell death" evidence=RCA

GO:0050832 "defense response to fungus" evidence=RCA

GO:0004702 "receptor signaling protein serine/threonine kinase activity" evidence=ISS

TAIR|locus:2096349 RLP31 "receptor like protein 31" [Arabidopsis thaliana (taxid:3702)]

 Score = 104 (41.7 bits), Expect = 0.00015, P = 0.00015
 Identities = 26/65 (40%), Positives = 37/65 (56%)

Query:    30 CLQTERTALLELKSFF--ISISDREYEDVILTSWVDDGMPSDCCDDWEGVECNATTRRVM 87
             C   +R ALLE K  F  ++ S++   DV L+SW       DCC  WEGV C+A +  V+
Sbjct:    30 CRHDQRNALLEFKHEFPRVNESNQIPYDVSLSSW---NKSIDCCS-WEGVTCDAISSEVI 85

Query:    88 QLSLN 92
              L+L+
Sbjct:    86 SLNLS 90

GO:0005886 "plasma membrane" evidence=ISM

GO:0006952 "defense response" evidence=ISS

GO:0016301 "kinase activity" evidence=ISS

GO:0007165 "signal transduction" evidence=IC

TAIR|locus:2182260 AT5G12940 [Arabidopsis thaliana (taxid:3702)]

 Score = 98 (39.6 bits), Expect = 0.00022, P = 0.00022
 Identities = 25/65 (38%), Positives = 35/65 (53%)

Query:    29 ACLQTERTALLELKSFFISISDREYEDVILTSWVDDGMPSDCCDDWEGVECNATTRRVMQ 88
             +CL ++R ALLE ++      +  Y  V  T W   G+  DCC  W GV C+  TRRV  
Sbjct:    26 SCLPSDRAALLEFRAKL----NEPYIGVFNT-W--KGL--DCCKGWYGVSCDPNTRRVAG 76

Query:    89 LSLNG 93
             ++L G
Sbjct:    77 ITLRG 81

GO:0005576 "extracellular region" evidence=ISM

GO:0007165 "signal transduction" evidence=IC

TAIR|locus:2094603 RLP37 "receptor like protein 37" [Arabidopsis thaliana (taxid:3702)]

 Score = 98 (39.6 bits), Expect = 0.00064, P = 0.00064
 Identities = 26/62 (41%), Positives = 32/62 (51%)

Query:    30 CLQTERTALLELKSFFISISDREYEDVILTSWVDDGMPSDCCDDWEGVECNATTRRVMQL 89
             C   +R ALLELK  F   S+  +  V   SW       DCC  WEGV C+AT   V+ L
Sbjct:    37 CRSDQRDALLELKKEFPIHSNGSHH-VTTLSW---NKTVDCCS-WEGVTCDATLGEVISL 91

Query:    90 SL 91
             +L
Sbjct:    92 NL 93

GO:0005886 "plasma membrane" evidence=ISM

GO:0006952 "defense response" evidence=ISS

GO:0016301 "kinase activity" evidence=ISS

GO:0007165 "signal transduction" evidence=IC

TAIR|locus:2154463 AT5G23400 [Arabidopsis thaliana (taxid:3702)]

 Score = 95 (38.5 bits), Expect = 0.00087, P = 0.00087
 Identities = 26/63 (41%), Positives = 31/63 (49%)

Query:    30 CLQTERTALLELKSFFISISDREYEDVILTSWVDDGMPSDCCD-DWEGVECNATTRRVMQ 88
             C   +R  LL  KS  I     E    +L SWV      DCC+ DWEGV+CN  T +V  
Sbjct:    31 CSSQDRATLLGFKSSII-----EDTTGVLDSWVG----KDCCNGDWEGVQCNPATGKVTG 81

Query:    89 LSL 91
             L L
Sbjct:    82 LVL 84


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.322   0.135   0.424    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      110        99   0.00091  102 3  11 22  0.37    30
                                                     29  0.46    31


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  9
  No. of states in DFA:  590 (63 KB)
  Total size of DFA:  135 KB (2084 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  8.89u 0.11s 9.00t   Elapsed:  00:00:01
  Total cpu time:  8.89u 0.11s 9.00t   Elapsed:  00:00:01
  Start:  Sat May 11 10:53:37 2013   End:  Sat May 11 10:53:38 2013

GO:0005886 "plasma membrane" evidence=ISM

GO:0006952 "defense response" evidence=ISS

GO:0007165 "signal transduction" evidence=IC

GO:0005618 "cell wall" evidence=IDA

GO:0005829 "cytosol" evidence=RCA

GO:0009506 "plasmodesma" evidence=IDA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: fgenesh2_kg.2__1688__AT1G74190.1 annotation not avaliable (966 aa) (Arabidopsis lyrata)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	110
pfam08263	42	pfam08263, LRRNT_2, Leucine rich repeat N-terminal	8e-05

>gnl|CDD|219766 pfam08263, LRRNT_2, Leucine rich repeat N-terminal domain

 Score = 36.9 bits (86), Expect = 8e-05
 Identities = 17/50 (34%), Positives = 20/50 (40%), Gaps = 8/50 (16%)

Query: 31 LQTERTALLELKSFFISISDREYEDVILTSWVDDGMPSDCCDDWEGVECN 80
          L  +R ALL  KS              L+SW      SD C  W GV C+
Sbjct: 1  LNDDRDALLAFKSSLNGDPS-----GALSSWNPSS--SDPCS-WTGVTCD 42

Leucine Rich Repeats pfam00560 are short sequence motifs present in a number of proteins with diverse functions and cellular locations. Leucine Rich Repeats are often flanked by cysteine rich domains. This domain is often found at the N-terminus of tandem leucine rich repeats. Length = 42

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	110
PF08263	43	LRRNT_2: Leucine rich repeat N-terminal domain; In	98.64
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	98.36
PLN03150	623	hypothetical protein; Provisional	96.3

>PF08263 LRRNT_2: Leucine rich repeat N-terminal domain; InterPro: IPR013210 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=98.64  E-value=5.4e-08  Score=54.65  Aligned_cols=41  Identities=39%  Similarity=0.741  Sum_probs=28.9

Q ss_pred             hHHHHHHHHHHhhccC-CCccccccccCCCCCCCCCCCCCCCCCcceeeC
Q 037353           32 QTERTALLELKSFFIS-ISDREYEDVILTSWVDDGMPSDCCDDWEGVECN   80 (110)
Q Consensus        32 ~~d~~aLl~~k~~l~~-~~~~~~~~~~l~~W~~~~~~~~~C~~W~GV~C~   80 (110)
                      ++|+.+|++||..+.. +.      ..+.+|+.... .+|| +|.||.|+
T Consensus         2 ~~d~~aLl~~k~~l~~~~~------~~l~~W~~~~~-~~~C-~W~GV~Cd   43 (43)
T PF08263_consen    2 NQDRQALLAFKKSLNNDPS------GVLSSWNPSSD-SDPC-SWSGVTCD   43 (43)
T ss_dssp             HHHHHHHHHHHHCTT-SC-------CCCTT--TT---S-CC-CSTTEEE-
T ss_pred             cHHHHHHHHHHHhcccccC------cccccCCCcCC-CCCe-eeccEEeC
Confidence            5789999999999974 43      57899997620 4899 99999995

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. This domain is often found at the N terminus of tandem leucine rich repeats.; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1OGQ_A.

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=98.36  E-value=1.5e-06  Score=74.80  Aligned_cols=62  Identities=29%  Similarity=0.536  Sum_probs=50.5

Q ss_pred             ChHHHHHHHHHHhhccCCCccccccccCCCCCCCCCCCCCCCCCcceeeCCCCCCeEEEEecCCCCccC-CCCC
Q 037353           31 LQTERTALLELKSFFISISDREYEDVILTSWVDDGMPSDCCDDWEGVECNATTRRVMQLSLNGTRMLLC-HNDI  103 (110)
Q Consensus        31 ~~~d~~aLl~~k~~l~~~~~~~~~~~~l~~W~~~~~~~~~C~~W~GV~C~~~~~rVi~L~Ls~~~Lsg~-~~~i  103 (110)
                      .+.|+.+|+.+|..+.++.      ..+.+|+..   .+|| .|.||.|+. ..+|+.|+|++++++|. ++.+
T Consensus        27 ~~~~~~~l~~~~~~~~~~~------~~~~~w~~~---~~~c-~w~gv~c~~-~~~v~~L~L~~~~i~~~~~~~~   89 (968)
T PLN00113         27 HAEELELLLSFKSSINDPL------KYLSNWNSS---ADVC-LWQGITCNN-SSRVVSIDLSGKNISGKISSAI   89 (968)
T ss_pred             CHHHHHHHHHHHHhCCCCc------ccCCCCCCC---CCCC-cCcceecCC-CCcEEEEEecCCCccccCChHH
Confidence            5578999999999987554      457789765   5799 999999986 46899999999998887 6543

>PLN03150 hypothetical protein; Provisional

Probab=96.30  E-value=0.0094  Score=50.18  Aligned_cols=67  Identities=27%  Similarity=0.297  Sum_probs=44.5

Q ss_pred             ccCChHHHHHHHHHHhhccCCCccccccccCCCCCCCCCCCCCCCCCcceeeCC--CC--CCeEEEEecCCCCccC-CCC
Q 037353           28 KACLQTERTALLELKSFFISISDREYEDVILTSWVDDGMPSDCCDDWEGVECNA--TT--RRVMQLSLNGTRMLLC-HND  102 (110)
Q Consensus        28 ~~~~~~d~~aLl~~k~~l~~~~~~~~~~~~l~~W~~~~~~~~~C~~W~GV~C~~--~~--~rVi~L~Ls~~~Lsg~-~~~  102 (110)
                      ....+.|..+|+.+|..+..+.        ..+|+...|....| .|.||.|..  ..  .+|..|+|++++|.|. |+.
T Consensus       367 ~~t~~~~~~aL~~~k~~~~~~~--------~~~W~g~~C~p~~~-~w~Gv~C~~~~~~~~~~v~~L~L~~n~L~g~ip~~  437 (623)
T PLN03150        367 SKTLLEEVSALQTLKSSLGLPL--------RFGWNGDPCVPQQH-PWSGADCQFDSTKGKWFIDGLGLDNQGLRGFIPND  437 (623)
T ss_pred             cccCchHHHHHHHHHHhcCCcc--------cCCCCCCCCCCccc-ccccceeeccCCCCceEEEEEECCCCCccccCCHH
Confidence            3456778999999998875432        23786432101123 699999952  11  2488899999888888 765


Q ss_pred             C
Q 037353          103 I  103 (110)
Q Consensus       103 i  103 (110)
                      |
T Consensus       438 i  438 (623)
T PLN03150        438 I  438 (623)
T ss_pred             H
Confidence            4

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	110
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	6e-10
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	1e-08

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 53.8 bits (130), Expect = 6e-10
 Identities = 12/65 (18%), Positives = 21/65 (32%), Gaps = 13/65 (20%)

Query: 29 ACLQTERTALLELKSFFISISDREYEDVILTSWVDDGMPSDCCDDWEGVECNATTRRVMQ 88
            L  E   L+  K              +L  W  +    + C  ++GV C     +V  
Sbjct: 8  QSLYREIHQLISFKDVLPD-------KNLLPDWSSN---KNPC-TFDGVTCR--DDKVTS 54

Query: 89 LSLNG 93
          + L+ 
Sbjct: 55 IDLSS 59

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score = 50.2 bits (121), Expect = 1e-08
 Identities = 21/67 (31%), Positives = 34/67 (50%), Gaps = 13/67 (19%)

Query: 30 CLQTERTALLELKSFFISISDREYEDVILTSWVDDGMPSDCCD-DWEGVECNATTR--RV 86
          C   ++ ALL++K     + +       L+SW+     +DCC+  W GV C+  T+  RV
Sbjct: 3  CNPQDKQALLQIKK---DLGN----PTTLSSWLPT---TDCCNRTWLGVLCDTDTQTYRV 52

Query: 87 MQLSLNG 93
            L L+G
Sbjct: 53 NNLDLSG 59

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	110
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	98.65
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	98.57
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	98.14
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	98.02
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	95.87

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=98.65  E-value=6.5e-08  Score=72.07  Aligned_cols=65  Identities=32%  Similarity=0.674  Sum_probs=53.6

Q ss_pred             cCChHHHHHHHHHHhhccCCCccccccccCCCCCCCCCCCCCCCC--CcceeeCCCC--CCeEEEEecCCCCcc--C-CC
Q 037353           29 ACLQTERTALLELKSFFISISDREYEDVILTSWVDDGMPSDCCDD--WEGVECNATT--RRVMQLSLNGTRMLL--C-HN  101 (110)
Q Consensus        29 ~~~~~d~~aLl~~k~~l~~~~~~~~~~~~l~~W~~~~~~~~~C~~--W~GV~C~~~~--~rVi~L~Ls~~~Lsg--~-~~  101 (110)
                      .|.+.|+.+|+++|..+.++.       .+.+|..+   .+|| +  |.||.|+..+  ++|+.|+|++++++|  . |+
T Consensus         2 ~c~~~~~~aL~~~k~~~~~~~-------~l~~W~~~---~~~C-~~~w~gv~C~~~~~~~~l~~L~L~~~~l~~~~~~~~   70 (313)
T 1ogq_A            2 LCNPQDKQALLQIKKDLGNPT-------TLSSWLPT---TDCC-NRTWLGVLCDTDTQTYRVNNLDLSGLNLPKPYPIPS   70 (313)
T ss_dssp             CSCHHHHHHHHHHHHHTTCCG-------GGTTCCTT---SCTT-TTCSTTEEECCSSSCCCEEEEEEECCCCSSCEECCG
T ss_pred             CCCHHHHHHHHHHHHhcCCcc-------cccCCCCC---CCCC-cCCCcceEeCCCCCCceEEEEECCCCCccCCcccCh
Confidence            588899999999999986543       57899765   5799 7  9999998644  789999999999998  6 66


Q ss_pred             CCc
Q 037353          102 DIG  104 (110)
Q Consensus       102 ~ig  104 (110)
                      .++
T Consensus        71 ~l~   73 (313)
T 1ogq_A           71 SLA   73 (313)
T ss_dssp             GGG
T ss_pred             hHh
Confidence            553

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=98.57  E-value=4.8e-08  Score=80.77  Aligned_cols=60  Identities=20%  Similarity=0.492  Sum_probs=48.9

Q ss_pred             CccCChHHHHHHHHHHhhccCCCccccccccCCCCCCCCCCCCCCCCCcceeeCCCCCCeEEEEecCCCCccC
Q 037353           27 DKACLQTERTALLELKSFFISISDREYEDVILTSWVDDGMPSDCCDDWEGVECNATTRRVMQLSLNGTRMLLC   99 (110)
Q Consensus        27 ~~~~~~~d~~aLl~~k~~l~~~~~~~~~~~~l~~W~~~~~~~~~C~~W~GV~C~~~~~rVi~L~Ls~~~Lsg~   99 (110)
                      +....+.|+.+|++||+.+.++.       .+.+|+.+   .+|| +|.||.|+  .+||+.|+|+++++.|.
T Consensus         6 ~~~~~~~~~~all~~k~~~~~~~-------~l~~W~~~---~~~C-~w~gv~C~--~~~v~~L~L~~~~l~g~   65 (768)
T 3rgz_A            6 PSQSLYREIHQLISFKDVLPDKN-------LLPDWSSN---KNPC-TFDGVTCR--DDKVTSIDLSSKPLNVG   65 (768)
T ss_dssp             --CCHHHHHHHHHHHHTTCSCTT-------SSTTCCTT---SCGG-GSTTEEEE--TTEEEEEECTTSCCCEE
T ss_pred             cccCCHHHHHHHHHHHhhCCCcc-------cccCCCCC---CCCc-CCcceEEC--CCcEEEEECCCCCcCCc
Confidence            34456789999999999987552       57899854   5899 99999998  48999999999998873

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=98.14  E-value=1.6e-06  Score=70.44  Aligned_cols=71  Identities=24%  Similarity=0.221  Sum_probs=51.4

Q ss_pred             cCChHHHHHHHHHHhhccCCCcc--ccccccCCCCCCCCCCCCCCCCC---cceeeCCCCCCeEEEEecCCCCccC-CCC
Q 037353           29 ACLQTERTALLELKSFFISISDR--EYEDVILTSWVDDGMPSDCCDDW---EGVECNATTRRVMQLSLNGTRMLLC-HND  102 (110)
Q Consensus        29 ~~~~~d~~aLl~~k~~l~~~~~~--~~~~~~l~~W~~~~~~~~~C~~W---~GV~C~~~~~rVi~L~Ls~~~Lsg~-~~~  102 (110)
                      +....|+.||.+++..+.++.-.  +.+.....+|+..   .++| .|   .||.|+.. +||++|+|++++++|. |+.
T Consensus        26 ~~~~~d~~aL~~~~~~~~~~~w~~~~~~~~~~~~W~~~---~~~c-~w~~~~GV~C~~~-~~V~~L~L~~~~l~g~lp~~  100 (636)
T 4eco_A           26 AEYIKDYLALKEIWDALNGKNWSQQGFGTQPGANWNFN---KELD-MWGAQPGVSLNSN-GRVTGLSLEGFGASGRVPDA  100 (636)
T ss_dssp             CHHHHHHHHHHHHHHHTTGGGCCCCC------CCCCCS---SCGG-GTTCCTTEEECTT-CCEEEEECTTSCCEEEECGG
T ss_pred             hhHHHHHHHHHHHHHHcCCCCcccCCcCCccCCCCCCC---CCcc-cccCCCCeEEcCC-CCEEEEEecCcccCCcCChH
Confidence            34456899999999988643200  0000123479875   5899 99   99999864 8999999999999999 988


Q ss_pred             Cc
Q 037353          103 IG  104 (110)
Q Consensus       103 ig  104 (110)
                      |+
T Consensus       101 l~  102 (636)
T 4eco_A          101 IG  102 (636)
T ss_dssp             GG
T ss_pred             Hh
Confidence            75

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}

Probab=98.02  E-value=4.2e-06  Score=71.29  Aligned_cols=63  Identities=24%  Similarity=0.272  Sum_probs=49.5

Q ss_pred             ccCChHHHHHHHHHHhhccCCCccccccccCCCCCCCC---CCCCC--CCCC------------cceeeCCCCCCeEEEE
Q 037353           28 KACLQTERTALLELKSFFISISDREYEDVILTSWVDDG---MPSDC--CDDW------------EGVECNATTRRVMQLS   90 (110)
Q Consensus        28 ~~~~~~d~~aLl~~k~~l~~~~~~~~~~~~l~~W~~~~---~~~~~--C~~W------------~GV~C~~~~~rVi~L~   90 (110)
                      .+....|+.+|++||..+.++           +|+.+.   . .+|  | +|            .||.|+. .+||++|+
T Consensus       264 ~~~~~~d~~ALl~~k~~l~~~-----------~W~~~~~~~~-~~~~~C-~W~~~~~~~~w~~~~GV~C~~-~~~V~~L~  329 (876)
T 4ecn_A          264 TAEYIKDYKALKAIWEALDGK-----------NWRYYSGTIN-NTIHSL-NWNFNKELDMWGDQPGVDLDN-NGRVTGLS  329 (876)
T ss_dssp             CCHHHHHHHHHHHHHHHTTGG-----------GCCCCCSSCS-SCCCCC-SCCCSSCGGGTTCCTTEEECT-TSCEEEEE
T ss_pred             cccchHHHHHHHHHHHHcCCC-----------CCCcCCCccc-ccCCcc-ccccccccccccCcCceEecC-CCCEEEEE
Confidence            345567999999999988432           676531   0 245  9 99            9999986 58999999


Q ss_pred             ecCCCCccC-CCCCc
Q 037353           91 LNGTRMLLC-HNDIG  104 (110)
Q Consensus        91 Ls~~~Lsg~-~~~ig  104 (110)
                      |++++|+|. |+.|+
T Consensus       330 Ls~~~L~G~ip~~l~  344 (876)
T 4ecn_A          330 LAGFGAKGRVPDAIG  344 (876)
T ss_dssp             CTTTCCEEEECGGGG
T ss_pred             CccCCCCCcCchHHh
Confidence            999999999 98875

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=95.87  E-value=0.0017  Score=48.43  Aligned_cols=68  Identities=12%  Similarity=0.131  Sum_probs=47.5

Q ss_pred             ccCChHHHHHHHHHHhhcc-CCCccccccccCCCCC---CCCCCCCCCCCCcceeeCC--------CCCCeEEEEecCCC
Q 037353           28 KACLQTERTALLELKSFFI-SISDREYEDVILTSWV---DDGMPSDCCDDWEGVECNA--------TTRRVMQLSLNGTR   95 (110)
Q Consensus        28 ~~~~~~d~~aLl~~k~~l~-~~~~~~~~~~~l~~W~---~~~~~~~~C~~W~GV~C~~--------~~~rVi~L~Ls~~~   95 (110)
                      .....+++.+|++||..+. ++.      ..+..|.   ...  .++| .|.|+.|+.        ...+|+.|+|++++
T Consensus        22 ~~~~~~~~~aLl~~k~~~~~~~~------~~~~~w~~~~~~~--~~~~-~~~g~~~~~~~~~l~~~~~~~l~~L~L~~n~   92 (328)
T 4fcg_A           22 STALRPYHDVLSQWQRHYNADRN------RWHSAWRQANSNN--PQIE-TRTGRALKATADLLEDATQPGRVALELRSVP   92 (328)
T ss_dssp             -CCCCCHHHHHHHHHHHHHHCCT------THHHHHHHHTTTC--TTSC-CSHHHHHHHHHHHHHHHTSTTCCEEEEESSC
T ss_pred             cccCchHHHHHHHHHHhccCCch------hhhhhhccccccc--cccc-ccCCcchhhhHHHHhcccccceeEEEccCCC
Confidence            4466788999999999874 443      3456784   222  5789 999999942        23579999999999


Q ss_pred             CccCCCCCc
Q 037353           96 MLLCHNDIG  104 (110)
Q Consensus        96 Lsg~~~~ig  104 (110)
                      ++.-|+.++
T Consensus        93 l~~lp~~l~  101 (328)
T 4fcg_A           93 LPQFPDQAF  101 (328)
T ss_dssp             CSSCCSCGG
T ss_pred             chhcChhhh
Confidence            872266553

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	110
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	4e-07

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 44.4 bits (103), Expect = 4e-07
 Identities = 21/67 (31%), Positives = 34/67 (50%), Gaps = 13/67 (19%)

Query: 30 CLQTERTALLELKSFFISISDREYEDVILTSWVDDGMPSDCCDD-WEGVECNATTR--RV 86
          C   ++ ALL++K     + +       L+SW+     +DCC+  W GV C+  T+  RV
Sbjct: 3  CNPQDKQALLQIKK---DLGN----PTTLSSWLPT---TDCCNRTWLGVLCDTDTQTYRV 52

Query: 87 MQLSLNG 93
            L L+G
Sbjct: 53 NNLDLSG 59

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	110
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	99.09

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=99.09  E-value=9.4e-11  Score=85.12  Aligned_cols=66  Identities=32%  Similarity=0.664  Sum_probs=54.0

Q ss_pred             cCChHHHHHHHHHHhhccCCCccccccccCCCCCCCCCCCCCCC-CCcceeeCCCC--CCeEEEEecCCCCccC---CCC
Q 037353           29 ACLQTERTALLELKSFFISISDREYEDVILTSWVDDGMPSDCCD-DWEGVECNATT--RRVMQLSLNGTRMLLC---HND  102 (110)
Q Consensus        29 ~~~~~d~~aLl~~k~~l~~~~~~~~~~~~l~~W~~~~~~~~~C~-~W~GV~C~~~~--~rVi~L~Ls~~~Lsg~---~~~  102 (110)
                      -|.++|+.+|++||+.+.++.       .+.+|..+   .+||. .|.||.|+..+  .||++|+|++++++|.   |+.
T Consensus         2 ~c~~~e~~aLl~~k~~~~~~~-------~l~sW~~~---~d~C~~~w~gv~C~~~~~~~~v~~L~L~~~~l~g~~~lp~~   71 (313)
T d1ogqa_           2 LCNPQDKQALLQIKKDLGNPT-------TLSSWLPT---TDCCNRTWLGVLCDTDTQTYRVNNLDLSGLNLPKPYPIPSS   71 (313)
T ss_dssp             CSCHHHHHHHHHHHHHTTCCG-------GGTTCCTT---SCTTTTCSTTEEECCSSSCCCEEEEEEECCCCSSCEECCGG
T ss_pred             CCCHHHHHHHHHHHHHCCCCC-------cCCCCCCC---CCCCCCcCCCeEEeCCCCcEEEEEEECCCCCCCCCCCCChH
Confidence            488999999999999997653       58899865   58993 39999998633  4899999999999984   666


Q ss_pred             Cc
Q 037353          103 IG  104 (110)
Q Consensus       103 ig  104 (110)
                      |+
T Consensus        72 l~   73 (313)
T d1ogqa_          72 LA   73 (313)
T ss_dssp             GG
T ss_pred             Hh
Confidence            64