Citrus Sinensis ID: 037366

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70----
Protein Sequence
MGTCGPINMLHVLSKLFSGQLLGPLLDIESSDADDNFAARFPNICCLCNPAFRMKELHNISMCSKSPTLPPDDR
Secondary Structure (PSIPRED)
ccccccHHHHHHHHHHHHccccccccccccccccHHHHHHcccccccccHHHHHHHHHHHcccccccccccccc
Secondary Structure Prediction (SSPRO)
cccccHHHHHHHHHHHHHccccccccccccccccccHHHccccccccccHHHHHHHHHcccccccccccccccc
Coil and Loop (DISEMBL)
mgtcgpinMLHVLSKLfsgqllgplldiessdaddnfaarfpnicclcnpafrmkelhnismcsksptlppddr
Flexible Loop (DISEMBL)
MGTCGPINMLHVLSKLFSGQLLGPLLDIESSDADDNFAARFPNICCLCNPAFRMKELhnismcsksptlppddr
Low Complexity Region (SEG)
MGTCGPINMLHVLSKLFSGQLLGPLLDIESSDADDNFAARFPNICCLCNPAFRMKELHNISMCSKSPTLPPDDR
Disordered region (IsUnstruct)
****GPINMLHVLSKLFSGQLLGPLLDIESSDADDNFAARFPNICCLCNPAFRMKELHNI**************
Disordered Region (DISOPRED)
***CGPINMLHVLSKLFSGQLLGPLLDIESSDADDNFAARFPNICCLCNPAFRMKEL*****************
Disordered Region (DISEMBL)
MGTCGPINMLHVLSKLFSGQLLGPLLDIESSDADDNFAARFPNICCLCNPAFRMKELHNISMC***********
Disordered Region (DISPRO)
*GTCGPINMLHVLSKLFSGQLLGPLLDIESSDADDNFAARFPNICCLCNPAFRMKELHNISMCSKSPT******
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
oohhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MGTCGPINMLHVLSKLFSGQLLGPLLDIESSDADDNFAARFPNICCLCNPAFRMKELHNISMCSKSPTLPPDDR
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	74	2.2.26 [Sep-21-2011]
Q66GS2	371	Probable beta-1,3-galacto	yes	no	0.432	0.086	0.656	1e-05
Q8L7M1	345	Probable beta-1,3-galacto	no	no	0.432	0.092	0.625	0.0001
Q9LKA9	343	Probable beta-1,3-galacto	no	no	0.432	0.093	0.625	0.0007

>sp|Q66GS2|B3GTC_ARATH Probable beta-1,3-galactosyltransferase 12 OS=Arabidopsis thaliana GN=B3GALT12 PE=2 SV=1

 Score = 48.5 bits (114), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 21/32 (65%), Positives = 23/32 (71%)

Query: 42  PNICCLCNPAFRMKELHNISMCSKSPTLPPDD 73
           P    LC+P  R+KELH   MCSKSPTLPPDD
Sbjct: 337 PKCSGLCDPESRLKELHKTDMCSKSPTLPPDD 368

Beta-1,3-galactosyltransferase that transfers galactose from UDP-galactose to substrates with a terminal glycosyl residue.
Arabidopsis thaliana (taxid: 3702)
EC: 2EC: .EC: 4EC: .EC: 1EC: .EC: -

>sp|Q8L7M1|B3GTE_ARATH Probable beta-1,3-galactosyltransferase 14 OS=Arabidopsis thaliana GN=B3GALT14 PE=2 SV=1

 Score = 45.4 bits (106), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 20/32 (62%), Positives = 20/32 (62%)

Query: 42  PNICCLCNPAFRMKELHNISMCSKSPTLPPDD 73
           P    LCNP  RM ELH    CSKSPTLP DD
Sbjct: 313 PKCSGLCNPEKRMLELHKQESCSKSPTLPSDD 344

Beta-1,3-galactosyltransferase that transfers galactose from UDP-galactose to substrates with a terminal glycosyl residue.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 4

EC: .

EC: 1

EC: .

EC: -

>sp|Q9LKA9|B3GTD_ARATH Probable beta-1,3-galactosyltransferase 13 OS=Arabidopsis thaliana GN=B3GALT13 PE=2 SV=1

 Score = 42.7 bits (99), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 20/32 (62%), Positives = 21/32 (65%)

Query: 42  PNICCLCNPAFRMKELHNISMCSKSPTLPPDD 73
           P    LCNP  RM ELH +  CSKSPTLP DD
Sbjct: 311 PKCSGLCNPEKRMLELHMLESCSKSPTLPSDD 342

Beta-1,3-galactosyltransferase that transfers galactose from UDP-galactose to substrates with a terminal glycosyl residue.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 4

EC: .

EC: 1

EC: .

EC: -

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	74
224088832	364	predicted protein [Populus trichocarpa]	0.445	0.090	0.787	1e-06
297825719	367	galactosyltransferase family protein [Ar	0.432	0.087	0.687	1e-05
225429548	361	PREDICTED: probable beta-1,3-galactosylt	0.445	0.091	0.696	2e-05
359487245	229	PREDICTED: LOW QUALITY PROTEIN: probable	0.445	0.144	0.606	6e-05
30683005	371	putative beta-1,3-galactosyltransferase	0.432	0.086	0.656	0.0005
3413704	333	unknown protein [Arabidopsis thaliana]	0.432	0.096	0.656	0.0006

>gi|224088832|ref|XP_002308559.1| predicted protein [Populus trichocarpa] gi|222854535|gb|EEE92082.1| predicted protein [Populus trichocarpa]

 Score = 57.0 bits (136), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 26/33 (78%), Positives = 26/33 (78%)

Query: 42  PNICCLCNPAFRMKELHNISMCSKSPTLPPDDR 74
           P    LCNPA RMKELH I MCSKSPTLPPDDR
Sbjct: 332 PKCSGLCNPASRMKELHKIDMCSKSPTLPPDDR 364

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297825719|ref|XP_002880742.1| galactosyltransferase family protein [Arabidopsis lyrata subsp. lyrata] gi|297326581|gb|EFH57001.1| galactosyltransferase family protein [Arabidopsis lyrata subsp. lyrata]

 Score = 53.9 bits (128), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 22/32 (68%), Positives = 23/32 (71%)

Query: 42  PNICCLCNPAFRMKELHNISMCSKSPTLPPDD 73
           P    LCNP  R+KELH   MCSKSPTLPPDD
Sbjct: 333 PKCSGLCNPESRLKELHKTDMCSKSPTLPPDD 364

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225429548|ref|XP_002279252.1| PREDICTED: probable beta-1,3-galactosyltransferase 12 [Vitis vinifera] gi|296081659|emb|CBI20664.3| unnamed protein product [Vitis vinifera]

 Score = 53.1 bits (126), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 23/33 (69%), Positives = 25/33 (75%)

Query: 42  PNICCLCNPAFRMKELHNISMCSKSPTLPPDDR 74
           P    LCNP  R+KELH + MCSKSPTLPPDDR
Sbjct: 329 PKCSGLCNPTSRLKELHKMGMCSKSPTLPPDDR 361

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359487245|ref|XP_003633545.1| PREDICTED: LOW QUALITY PROTEIN: probable beta-1,3-galactosyltransferase 12-like [Vitis vinifera]

 Score = 51.6 bits (122), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 20/33 (60%), Positives = 25/33 (75%)

Query: 42  PNICCLCNPAFRMKELHNISMCSKSPTLPPDDR 74
           P    LCNP  ++ ELH ++MCSKSPTLPP+DR
Sbjct: 197 PKCSGLCNPTNKLNELHKMNMCSKSPTLPPNDR 229

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|30683005|ref|NP_180179.2| putative beta-1,3-galactosyltransferase 12 [Arabidopsis thaliana] gi|75115370|sp|Q66GS2.1|B3GTC_ARATH RecName: Full=Probable beta-1,3-galactosyltransferase 12 gi|51536430|gb|AAU05453.1| At2g26100 [Arabidopsis thaliana] gi|52421269|gb|AAU45204.1| At2g26100 [Arabidopsis thaliana] gi|330252700|gb|AEC07794.1| putative beta-1,3-galactosyltransferase 12 [Arabidopsis thaliana]

 Score = 48.5 bits (114), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 21/32 (65%), Positives = 23/32 (71%)

Query: 42  PNICCLCNPAFRMKELHNISMCSKSPTLPPDD 73
           P    LC+P  R+KELH   MCSKSPTLPPDD
Sbjct: 337 PKCSGLCDPESRLKELHKTDMCSKSPTLPPDD 368

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|3413704|gb|AAC31227.1| unknown protein [Arabidopsis thaliana]

 Score = 48.1 bits (113), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 21/32 (65%), Positives = 23/32 (71%)

Query: 42  PNICCLCNPAFRMKELHNISMCSKSPTLPPDD 73
           P    LC+P  R+KELH   MCSKSPTLPPDD
Sbjct: 299 PKCSGLCDPESRLKELHKTDMCSKSPTLPPDD 330

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	74
TAIR|locus:2057442	371	AT2G26100 [Arabidopsis thalian	0.432	0.086	0.656	1.9e-06
TAIR|locus:2086370	343	AT3G14960 [Arabidopsis thalian	0.432	0.093	0.625	4.3e-05
TAIR|locus:2009665	345	AT1G53290 [Arabidopsis thalian	0.432	0.092	0.625	9.1e-05

TAIR|locus:2057442 AT2G26100 [Arabidopsis thaliana (taxid:3702)]

 Score = 117 (46.2 bits), Expect = 1.9e-06, P = 1.9e-06
 Identities = 21/32 (65%), Positives = 23/32 (71%)

Query:    42 PNICCLCNPAFRMKELHNISMCSKSPTLPPDD 73
             P    LC+P  R+KELH   MCSKSPTLPPDD
Sbjct:   337 PKCSGLCDPESRLKELHKTDMCSKSPTLPPDD 368

GO:0006486 "protein glycosylation" evidence=IEA

GO:0008378 "galactosyltransferase activity" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0016757 "transferase activity, transferring glycosyl groups" evidence=ISS

GO:0016758 "transferase activity, transferring hexosyl groups" evidence=ISS

GO:0005794 "Golgi apparatus" evidence=IDA

TAIR|locus:2086370 AT3G14960 [Arabidopsis thaliana (taxid:3702)]

 Score = 104 (41.7 bits), Expect = 4.3e-05, P = 4.3e-05
 Identities = 20/32 (62%), Positives = 21/32 (65%)

Query:    42 PNICCLCNPAFRMKELHNISMCSKSPTLPPDD 73
             P    LCNP  RM ELH +  CSKSPTLP DD
Sbjct:   311 PKCSGLCNPEKRMLELHMLESCSKSPTLPSDD 342

GO:0005794 "Golgi apparatus" evidence=ISM;IDA

GO:0006486 "protein glycosylation" evidence=IEA

GO:0008378 "galactosyltransferase activity" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0016757 "transferase activity, transferring glycosyl groups" evidence=ISS

GO:0016758 "transferase activity, transferring hexosyl groups" evidence=ISS

TAIR|locus:2009665 AT1G53290 [Arabidopsis thaliana (taxid:3702)]

 Score = 101 (40.6 bits), Expect = 9.1e-05, P = 9.1e-05
 Identities = 20/32 (62%), Positives = 20/32 (62%)

Query:    42 PNICCLCNPAFRMKELHNISMCSKSPTLPPDD 73
             P    LCNP  RM ELH    CSKSPTLP DD
Sbjct:   313 PKCSGLCNPEKRMLELHKQESCSKSPTLPSDD 344


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.324   0.140   0.452    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0       74        74   0.00091  102 3  11 22  0.49    28
                                                     29  0.46    29


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  3
  No. of states in DFA:  496 (53 KB)
  Total size of DFA:  95 KB (2069 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  9.52u 0.20s 9.72t   Elapsed:  00:00:00
  Total cpu time:  9.52u 0.20s 9.72t   Elapsed:  00:00:00
  Start:  Sat May 11 11:26:39 2013   End:  Sat May 11 11:26:39 2013

GO:0005794 "Golgi apparatus" evidence=ISM;IDA

GO:0006486 "protein glycosylation" evidence=IEA

GO:0008378 "galactosyltransferase activity" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0016757 "transferase activity, transferring glycosyl groups" evidence=ISS

GO:0016758 "transferase activity, transferring hexosyl groups" evidence=ISS

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Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

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Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

No confident hit detected by STRING

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Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	74
KOG2288	274	consensus Galactosyltransferases [Carbohydrate tra	98.22
PLN03193	408	beta-1,3-galactosyltransferase; Provisional	97.8

>KOG2288 consensus Galactosyltransferases [Carbohydrate transport and metabolism]

Probab=98.22  E-value=8.1e-07  Score=68.63  Aligned_cols=38  Identities=24%  Similarity=0.085  Sum_probs=35.1

Q ss_pred             cccccCCCccCCCChHHHHHHhhccccCCCCCCCCCCC
Q 037366           36 NFAARFPNICCLCNPAFRMKELHNISMCSKSPTLPPDD   73 (74)
Q Consensus        36 ~~~WDIPKCSGLCNPe~rm~ELH~~~~CSkSPTL~pdD   73 (74)
                      --+|++|||||+|++++||+++|..+.|++++++.+++
T Consensus       236 ~~~~~~~kcsglC~~~~rm~~~h~~~~~~~~~~~~~~~  273 (274)
T KOG2288|consen  236 CAASFDWKCSGLCKSEDRMLEVHKYDWEGKPATCCSRF  273 (274)
T ss_pred             eeeeecccccccCchHHHHhHHHHhhccCCCcccCccc
Confidence            35899999999999999999999999999999988764

>PLN03193 beta-1,3-galactosyltransferase; Provisional

Probab=97.80  E-value=9.5e-06  Score=64.76  Aligned_cols=28  Identities=25%  Similarity=0.516  Sum_probs=23.6

Q ss_pred             ccccCCCccCCCChHHHHHHhhccccCCCCC
Q 037366           37 FAARFPNICCLCNPAFRMKELHNISMCSKSP   67 (74)
Q Consensus        37 ~~WDIPKCSGLCNPe~rm~ELH~~~~CSkSP   67 (74)
                      -.||+ ||||+|||+.||+|+|++  |....
T Consensus       373 ~~~~~-~csg~c~~~~~~~~~h~~--c~~~~  400 (408)
T PLN03193        373 ASFDW-SCSGICRSADRIKEVHRR--CGEGE  400 (408)
T ss_pred             EEecc-cCcccCCHHHHHHHHHHh--cCCCc
Confidence            56899 999999999999999974  65543

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Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

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Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00